BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781102|ref|YP_003065515.1|
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (497 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/497 (100%), Positives = 497/497 (100%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI
Sbjct: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV
Sbjct: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ
Sbjct: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK
Sbjct: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF
Sbjct: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV
Sbjct: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP
Sbjct: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK
Sbjct: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480

Query: 481 KMSVDCDIIREILGLIL 497
           KMSVDCDIIREILGLIL
Sbjct: 481 KMSVDCDIIREILGLIL 497


>gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 500

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/496 (76%), Positives = 441/496 (88%), Gaps = 3/496 (0%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQDLIYKDFPELINQLS FP+Q RER+I+++SSDSRHIQ GW+FVAIVGN+EDGH FI
Sbjct: 1   MKLQDLIYKDFPELINQLSRFPIQLRERRIHDISSDSRHIQVGWMFVAIVGNQEDGHFFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA+AQGA  IVVSS +  QDFS  ++++ PILVVDNTR+FLSL A+RLYGKHPE I AV
Sbjct: 61  PQAVAQGAGVIVVSSMHQSQDFSHVVKADIPILVVDNTRRFLSLVAARLYGKHPEKIFAV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASFVQQI Q +GLSSFQIGP S + S   +DNRLTTPSP+Y+A+AL+YL+S
Sbjct: 121 TGTSGKTSVASFVQQISQHAGLSSFQIGPISLMPSLQREDNRLTTPSPVYIAQALAYLAS 180

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG THVS+EASSHGLDQHRLDGIK IAGSFTN GRDHIDYH+TQQAYFNAKMRLFEELLP
Sbjct: 181 QGTTHVSIEASSHGLDQHRLDGIKFIAGSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLP 240

Query: 240 KESPAIIYA--DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           K SPA+I    DD++S +VM+RAHNAGCRVLSVGY+G FI LK +  I++KQQV+ISVEG
Sbjct: 241 KGSPAVICNNDDDSWSNKVMERAHNAGCRVLSVGYKGTFIRLKNLTQINDKQQVSISVEG 300

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           KDFDFLFPL G FQV NALV+AGLCIA GID  +V+E+LEK++V+PGRFEF+G NS+GGR
Sbjct: 301 KDFDFLFPLQGAFQVSNALVSAGLCIATGIDVPVVIEYLEKVNVIPGRFEFIGNNSKGGR 360

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           IYVDYAHT NSLEM+L+N+R ITSGRIIVVFGCGGDRD+GKR IMGKIAL+LAD++IVTD
Sbjct: 361 IYVDYAHTPNSLEMVLRNLRNITSGRIIVVFGCGGDRDRGKRKIMGKIALELADLSIVTD 420

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSE+P+ IRAEII+G PGFIE+GNR EAIR AI MLNK+DVLVVAGKGHETV I+ N
Sbjct: 421 DNPRSENPQAIRAEIINGFPGFIEEGNRQEAIRIAISMLNKEDVLVVAGKGHETVQIIHN 480

Query: 478 GEKKMSVDCDIIREIL 493
           G+ KMSVDCD+IREIL
Sbjct: 481 GKIKMSVDCDVIREIL 496


>gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
 gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
          Length = 486

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/471 (49%), Positives = 310/471 (65%), Gaps = 11/471 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++DL   +FPEL  QL        E  I  +++DSR ++ G +FVA+ G K +G  +I
Sbjct: 1   MKIRDLAGTNFPELSAQLQ---GNAAEIDIAGITADSRQVKPGDLFVAVAGTKANGSAYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA A++V+             +  P+  +   R+FL+  A+RL+G+ PE ++AV
Sbjct: 58  ADALSRGAAAVIVAEGSGAD-------AGAPVFELSEPRRFLAQAAARLFGRQPETMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   SGL++  IG T   +    D   LTTP P+ L K L+ L+ 
Sbjct: 111 TGTAGKTSVASFTRQIWAHSGLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELAD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y  +KMRLF  LLP
Sbjct: 171 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S E +  A  AG  V +VG  G FI LK+V    +KQ   + V    
Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFISLKRVEHFRHKQSAEVHVGDDI 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ GI++ +    LEKL    GR E VG    G   Y
Sbjct: 291 FEIHVPLAGDFQVANALVAAGLAMSTGIEAKVAFSALEKLQGASGRLELVGQTKDGALAY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L+++R  T+GR+I+VFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 351 VDYAHKPDALENVLESVRPFTTGRVIIVFGCGGDRDKGKRPIMGQIAARLADVVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSE PE IR+EI+ G  G  E  +R EAIRTA+ ML   D L+VAGKGHE
Sbjct: 411 PRSEIPETIRSEIMAGAKGATEIADRAEAIRTAVGMLKAGDTLIVAGKGHE 461


>gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CFN 42]
 gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CFN 42]
          Length = 506

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/471 (50%), Positives = 310/471 (65%), Gaps = 13/471 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR+++ G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRNVEPGNAFVAVTGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S     Q   A I    P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 78  ADAAGRGAAVAIAS-----QPVDAAI----PVLAVKEPRRFLSIAAARFYGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + ++ A +AG  V +VG +G ++ LK+V    +KQ   I +  + 
Sbjct: 249 KGAPAVIFADDPWSPQAVQAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 308

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G++    +  LEKL    GR E VG    G   Y
Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKAAMAALEKLVGASGRLELVGHTKDGALAY 368

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSE+P  IRAEI+       E G+R  AIR A+ ML   D L+VAGKGHE
Sbjct: 429 PRSEEPAAIRAEIMTAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHE 479


>gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
 gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
          Length = 487

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/471 (48%), Positives = 307/471 (65%), Gaps = 12/471 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D+    FPEL  Q+        + +I  +S+DSR +  G  FVA+ G K DG  FI
Sbjct: 1   MNLRDIAGNTFPELNGQVG---GALGDLEITGLSADSRKVAPGMAFVAVAGTKADGASFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA  ++  +  ++        +  P+L VD  R+FL++ ASR YGK PE ++AV
Sbjct: 58  ADAVSRGASVVIAGNGAAV--------TGAPLLTVDEPRRFLAVAASRFYGKQPETMVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G  +  IG T  +S    D   LTTP P+ L + L+ L+ 
Sbjct: 110 TGTAGKTSVASFTRQIWAYAGHPAAMIGTTGVVSPTRNDYGSLTTPDPVSLHQLLAALAD 169

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y  AKMRLF +LLP
Sbjct: 170 EGVTHAAMEASSHGLDQFRLDGVRLAAAAFTNLGRDHMDYHPTVEDYMAAKMRLFRDLLP 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S++ +  A + G  + +VG +G F+ LK+V    +KQ   + +    
Sbjct: 230 KGSPAVIFADDPWSEQAIAAARDTGQDIRTVGRKGDFLALKRVEHFRHKQIAEVHIGDDI 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL I+ G+ + + +  LEKL    GR E VG    G   Y
Sbjct: 290 FEIHIPLAGDFQVANALVAAGLAISTGVAAPVAMAALEKLVGAAGRLELVGHTHDGALAY 349

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GRIIVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 350 VDYAHKPDALENVLTSVRPFTTGRIIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 409

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSE+P  IRAEI+       E  +R EAIR A+ ML   D L+VAGKGHE
Sbjct: 410 PRSEEPAAIRAEIMAAASCATEIADRAEAIREAVSMLTSGDTLIVAGKGHE 460


>gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           [Rhizobium etli CIAT 652]
 gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CIAT 652]
          Length = 506

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/471 (50%), Positives = 311/471 (66%), Gaps = 13/471 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR++  G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDLFPELEAQLE-GPAGLLD--ISGLSSDSRNVAPGNAFVAVAGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S     Q   A+I    P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 78  ADAAGRGAAVAIAS-----QPVDASI----PVLAVKEPRRFLSIAAARFYGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S++ +K A +AG  V +VG +G ++ LK+V    +KQ   I +  + 
Sbjct: 249 KGAPAVIFADDPWSRQAVKAAVDAGLDVRTVGRKGDYLTLKRVEHFRHKQMAEIHIGDEI 308

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+   + +  LEKL    GR E VG    G   Y
Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVVPKVAMAALEKLVGASGRLELVGHTKDGALAY 368

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSE+P  IRAEI+       E G+R  AIR A+ ML   D L+VAGKGHE
Sbjct: 429 PRSEEPAAIRAEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHE 479


>gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
 gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
          Length = 490

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. 83/13]
 gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
 gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
          Length = 488

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
 gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
          Length = 490

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 505

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/471 (49%), Positives = 314/471 (66%), Gaps = 14/471 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPE+  QL   P    +  I+ +SSDSRH+  G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDQFPEIEAQLE-GPAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S A         + ++ P+L V   R+FLS+ ASR +G+ PE ++AV
Sbjct: 78  ADAAGRGAAVAIASQA---------VETSIPVLAVKEPRRFLSIAASRFFGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAG 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHAAMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFQ-LLP 247

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + +K A +AG  V +VG +G ++ LK+V    +KQ   I ++G+ 
Sbjct: 248 KGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIDGEI 307

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G++  + +  LEKL    GR E VG    G   Y
Sbjct: 308 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMAALEKLVGASGRLELVGHTKDGALAY 367

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 368 VDYAHKPDALENVLGSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 427

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSE+P  IRAEI+    G  E  +R +AIR A+ ML   D L+VAGKGHE
Sbjct: 428 PRSEEPAAIRAEIMAAASGASEIADRAKAIREAVGMLRSGDTLIVAGKGHE 478


>gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis B2/94]
 gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
          Length = 488

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
          Length = 490

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis ATCC 23445]
 gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
 gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC
           23445]
 gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
          Length = 488

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
 gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
          Length = 499

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475


>gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
 gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
          Length = 490

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 499

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGN 475


>gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 488

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGN 464


>gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
 gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
          Length = 490

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L   P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELP--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 5 str. 513]
          Length = 488

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L   P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELP--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 490

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475


>gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
 gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
          Length = 499

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 418 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475


>gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 488

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
 gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
          Length = 483

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/448 (50%), Positives = 296/448 (66%), Gaps = 7/448 (1%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S+DSR +  G++FVA+ G K DG  +I  AI +GA AIV      L+D S     
Sbjct: 20  EITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIVTDCQAVLEDLS----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+L V N R  L+L A+R YG  PE ++AVTGTSGK+SV SF++QI    GL +  IG
Sbjct: 75  -VPVLRVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGLCAASIG 133

Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +S    D   LTTP P+ L + L  +S +GVTH ++EASSHGLDQ RLDG++L AG
Sbjct: 134 TVGVVSPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRLDGVRLTAG 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNLGRDH+DYH+  + Y  AKMRLF+ LLP  +PA+I+ADD YSK+V+     A  RV
Sbjct: 194 AFTNLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVIDAVTQARRRV 253

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L++G +G FI + +V    +KQ +   VE K + F  PL G+FQV NALVAAGL IA G+
Sbjct: 254 LTIGRKGHFITINRVEHQRSKQCIECRVENKIYTFDLPLAGDFQVANALVAAGLAIATGL 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               V   LE L   PGR EFVG   +   +Y+DYAH   +LE +L ++R  T GR+IVV
Sbjct: 314 SPDKVFSALETLQGAPGRLEFVGKTEKNAPVYIDYAHKPEALEQVLLSVRPFTQGRLIVV 373

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGGDRDQGKR +MGKIA D ADI IVTDDNPR+E+PEKIR +I+  +P  IE  +R E
Sbjct: 374 FGCGGDRDQGKRALMGKIAADKADIVIVTDDNPRTENPEKIRKDILQAVPTAIEIADRGE 433

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           AI  ++ +L   D L++AGKGHE   I+
Sbjct: 434 AISYSVGLLKAGDTLIIAGKGHEDGQII 461


>gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
 gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
          Length = 490

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
 gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475


>gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 1 str. 9-941]
 gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brucella abortus bv. 1 str. 9-941]
 gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramyl-tripe [Brucella
           melitensis biovar Abortus 2308]
 gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
          Length = 488

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis
           M5-90]
          Length = 490

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis ATCC 23457]
 gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC
           23457]
          Length = 488

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
          Length = 499

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475


>gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
          Length = 490

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/452 (50%), Positives = 302/452 (66%), Gaps = 7/452 (1%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  V+SDSR ++ G++F A+ G K DG  F+  A+ +GA AIV      + D     
Sbjct: 21  EVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIVAGKDTVIAD----- 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  P+L VD+ R  L++ A++ YGK P+ ++AVTGTSGK+SVASF +QI   +G  +  
Sbjct: 76  -AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG T   S    D N LTTP P+ L + L+ L+ +GVTH ++EASSHGLDQ RLDG+KL 
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAAMEASSHGLDQRRLDGVKLA 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           AG+FTNLGRDH+DYH T + Y  AKMRLF  LLPK +PAII++DD +S + ++ A  AGC
Sbjct: 195 AGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLAGC 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V +VG +G FI LK+V     +Q V + +  + F+   PL G+FQV NALVAAGL +  
Sbjct: 255 DVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ +A  +  L  L   PGR + VG    G   YVDYAH   +LE +L ++R  T+GR+I
Sbjct: 315 GVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPEALENVLTSVRPFTTGRVI 374

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           VVFGCGGDRD+GKRPIMG+IA  LAD+AIVTDDNPRSE P +IR+EI+   PG  E G+R
Sbjct: 375 VVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDNPRSEVPAQIRSEIMAAAPGATEIGDR 434

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 435 REAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
 gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
          Length = 490

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+    +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELA--SGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 490

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/450 (50%), Positives = 302/450 (67%), Gaps = 7/450 (1%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  V+SDSR ++ G++F A+ G K DG  F+  A+ +GA AI+     ++ D     
Sbjct: 21  EVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIIAGKDTAIAD----- 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  P+L VD+ R  L++ A++ YGK P+ ++AVTGTSGK+SVASF +QI   +G  +  
Sbjct: 76  -AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134

Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG T   S    D N LTTP P+ L + L+ L+ +GVTH ++EASSHGLDQ RLDG+KL 
Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAAMEASSHGLDQRRLDGVKLA 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           AG+FTNLGRDH+DYH T + Y  AKMRLF  LLPK +PAII++DD +S + ++ A  AGC
Sbjct: 195 AGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLAGC 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V +VG +G FI LK+V     +Q V + +  + F+   PL G+FQV NALVAAGL +  
Sbjct: 255 DVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLAMVT 314

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ +A  +  L  L   PGR + VG    G   YVDYAH   +LE +L ++R  T+GR+I
Sbjct: 315 GVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPEALENVLTSVRPFTTGRVI 374

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           VVFGCGGDRD+GKRPIMG+IA  LAD+AIVTDDNPRSE P +IR+EI+   PG  E G+R
Sbjct: 375 VVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDNPRSEVPAQIRSEIMAAAPGATEIGDR 434

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            EAI TA+ M+   D LVVAGKGHE   IV
Sbjct: 435 REAIFTAVSMMQAGDTLVVAGKGHEEGQIV 464


>gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
 gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
          Length = 490

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  A C V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella canis ATCC 23365]
 gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 3 str. 686]
 gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC
           23365]
          Length = 488

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+    +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELA--SGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
 gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
          Length = 488

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+    +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIT------LFNELA--SGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M644/93/1]
 gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M13/05/1]
          Length = 488

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  A C V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium meliloti 1021]
 gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
 gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Sinorhizobium meliloti 1021]
 gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
          Length = 486

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/496 (46%), Positives = 314/496 (63%), Gaps = 11/496 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ DL   +FPEL  QL          +I  +++DSR ++ G +FVA+ G+K DG  +I
Sbjct: 1   MKITDLAGSNFPELSAQLK---GDAATIEIGGITADSRQVKPGDLFVAVAGSKADGAAYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA A+V  +    +       +  P+  + + R+FL+  AS  YG+ PE ++AV
Sbjct: 58  ADALSRGASAVVAGTGTPAE-------AGAPVFAISDPRRFLAKAASSFYGRQPETMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   SG S+  IG T  ++    +   LTTP P+ L K L+ L+ 
Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVAPGRTEYGSLTTPDPVSLHKLLAELAD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y  +KMRLF  LLP
Sbjct: 171 EGVTHAAMEASSHGLDQRRLDGVELAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S E +  A  AG  V +VG  G FI LK+V    +KQ   + V    
Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQ+ NALVAAGL ++ GI +      LE+L    GR E VG    G   Y
Sbjct: 291 YEIHVPLAGDFQIANALVAAGLAMSTGITAKAAFSALERLQGASGRLELVGQTKDGALAY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L  +L+++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 351 VDYAHKPDALANVLESVRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRAEI+    G  E G+R EAIR A+ ML   D L+VAGKGHE    V +  
Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRAAVGMLKTGDTLIVAGKGHEEGQTVGSVT 470

Query: 480 KKMSVDCDIIREILGL 495
              S   ++ + + GL
Sbjct: 471 LPFSDHAEVRKALGGL 486


>gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
 gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
          Length = 483

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/449 (50%), Positives = 294/449 (65%), Gaps = 9/449 (2%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S+DSR +  G++FVA+ G K DG  +I  AI +GA AIV      L+D       
Sbjct: 20  EITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIVTDCHAVLEDLP----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             PIL V N R  L+L A+R YG  PE ++AVTGTSGK+SV SF++QI    G  +  IG
Sbjct: 75  -VPILRVSNVRHSLALAAARFYGSQPETVVAVTGTSGKTSVVSFIRQIWTHVGFCAASIG 133

Query: 149 PTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +S   Q+    LTTP P+ L + L  +S +GVTH ++EASSHGLDQ RLDG++L A
Sbjct: 134 TVGVVSP-KQNVYGSLTTPDPVALHRLLCEISHEGVTHAALEASSHGLDQGRLDGVRLTA 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G+FTNLGRDH+DYH   + Y  AKM+LF+ LLP  +PA+I+ADD YS++V+     A  R
Sbjct: 193 GAFTNLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPALIFADDVYSQKVIDVVTQARRR 252

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VL++G +G+FI + +V    +KQ +   VE   + F  PL G+FQV NAL+AAGL IA G
Sbjct: 253 VLTIGRKGQFITINRVEHQRSKQCIECRVENNIYTFDLPLAGDFQVANALMAAGLAIATG 312

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    V   LE L   PGR EFVG       +Y+DYAH   +LE +L ++R  T GR+IV
Sbjct: 313 VSPRKVFSALETLQGAPGRLEFVGKTENNAPVYIDYAHKPEALEQVLLSVRPFTQGRLIV 372

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRDQGKRP+MGKIA D ADI IVTDDNPR+E PEKIR +I+  +P  IE  +R 
Sbjct: 373 VFGCGGDRDQGKRPLMGKIAADKADIVIVTDDNPRTEMPEKIRKDILQAVPTAIEIADRG 432

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           EAI  A+E+L   D L++AGKGHE   I+
Sbjct: 433 EAISYAVELLKAGDTLIIAGKGHEDGQII 461


>gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CNPAF512]
          Length = 486

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/471 (50%), Positives = 309/471 (65%), Gaps = 13/471 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P+   +  I+ +SSDSR +  G  FVA+ G K DG  FI
Sbjct: 1   MKLRDLAGDQFPELEAQLE-GPVGLLD--ISGLSSDSRKVAPGNAFVAVAGTKADGAGFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A+GA   + S     Q   A I    P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 58  ADAAARGAVVAIAS-----QPVDAAI----PVLAVKEPRRFLSIAAARFYGRQPETMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 109 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 169 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + +K A +AG  V +VG +G ++ LK+V    +KQ   I +  + 
Sbjct: 229 KGAPAVIFADDPWSAQAVKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+     +  LEKL    GR E VG    G   Y
Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVAPKAAMAALEKLVGASGRLELVGHTKDGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSE+P  IR+EI+       E G+R  AIR A+ ML   D L+VAGKGHE
Sbjct: 409 PRSEEPAAIRSEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHE 459


>gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium vitis S4]
 gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase
           [Agrobacterium vitis S4]
          Length = 486

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/476 (50%), Positives = 314/476 (65%), Gaps = 13/476 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   DF +L   L   P+   + +I  +++DSR ++ G +FVA+ G K DG  F+
Sbjct: 1   MKLRDLASGDFGDLTGPLD-GPVG--DVEITGITADSRKVEPGMLFVALQGVKADGAGFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA A++  S   +           P LV D  R  L+L A+R+Y   PE ++AV
Sbjct: 58  ADAVARGAAAVLSGSHLDIA---------VPALVTDQPRHALALLAARVYSGQPETMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +GL+S QIG T  IS    D   LTTP P+ L + L+ L+ 
Sbjct: 109 TGTAGKTSVASFTRQIWAYAGLASAQIGTTGVISPTRSDYGSLTTPDPVALHQLLADLAQ 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T   Y  AKMRLF+ LLP
Sbjct: 169 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S E ++ A  AG  V +VG  G F+ LK+V    +KQ   I  +G  
Sbjct: 229 KGSPAVIFADDEWSAEAIRVARQAGHDVRTVGRAGDFLSLKRVEHFRHKQIAEIHHQGAI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQ+ NALV+AGL I+ G++++L L+ LEKL    GR E VG  + G   Y
Sbjct: 289 FEVDLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASGRLELVGQANSGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L  +R  TSGRIIVVFGCGGDRD+GKRPIMG+IA  LADI IVTDDN
Sbjct: 349 VDYAHKPDALEKVLTAVRPFTSGRIIVVFGCGGDRDKGKRPIMGEIADRLADIVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PRSE    IR+E++   P  IE G+R +AIR A+ ML   D L+VAGKGHE   IV
Sbjct: 409 PRSEVAATIRSEVMAATPKGIEIGDRAQAIRAAVAMLATGDTLIVAGKGHEEGQIV 464


>gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium medicae WSM419]
 gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae
           WSM419]
          Length = 486

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/496 (46%), Positives = 312/496 (62%), Gaps = 11/496 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++DL    FPEL  QL          +I  +++DSR ++ G +FVA+ G K DG  +I
Sbjct: 1   MKIRDLAGSSFPELSAQLK---GDAANIEIGGITADSRQVRPGDLFVAVAGAKADGSAYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA A+V  +       SA   +   +  +   R+FL+  +S  +G+ PE ++AV
Sbjct: 58  TDALSRGASAVVAGT-------SARAEAGINVFTISEPRRFLAKASSSFFGRQPETMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   SG S+  IG T  +S   A+   LTTP P+ L K L+ L+ 
Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVSPGRAEYGSLTTPDPVSLHKLLAELAD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+ L A +FTNLGRDH+DYH T + Y  +KMRLF  LLP
Sbjct: 171 EGVTHAAMEASSHGLDQQRLDGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S + +  A  AG  V +VG  G FI LK+V    +KQ   + V    
Sbjct: 231 KGSPAVIFADDQWSADAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQV NALVAAGL ++ GI +      LE+L    GR E VG    G   Y
Sbjct: 291 YEIHVPLAGDFQVANALVAAGLAMSTGISAKAAFSALERLQGASGRLELVGQTKDGALAY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L  +L+++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 351 VDYAHKPDALSNVLESLRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRAEI+    G  E G+R EAIR A+ ML   D L+VAGKGHE    V +  
Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRVAVGMLKTGDTLIVAGKGHEEGQTVGSVT 470

Query: 480 KKMSVDCDIIREILGL 495
              S   ++ + + GL
Sbjct: 471 LPFSDHAEVRKALGGL 486


>gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 486

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/471 (49%), Positives = 311/471 (66%), Gaps = 13/471 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR +  G +FVA+ G K DG  FI
Sbjct: 1   MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRKVAPGNVFVAVAGTKADGAGFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S A         I ++ P+  V   R+FLS+ A+R +GK P+ ++AV
Sbjct: 58  VDAAGRGAAVAIASQA---------IDASIPVFAVKEPRRFLSIAAARFHGKQPDTMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L + L+ L+ 
Sbjct: 109 TGTAGKTSVASFTRQIWAYAGHTAAMIGTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAG 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T ++Y  AKMRLF+ LLP
Sbjct: 169 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S + +K A +AG  + +VG +G ++ LK+V    +KQ   I + G+ 
Sbjct: 229 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+++ + +  LEKL    GR E VG    G   Y
Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKVAMAALEKLVGASGRLELVGHTKDGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSE+P  IRAEI+       E  +R  AIR A+ ML   D L+VAGKGHE
Sbjct: 409 PRSEEPASIRAEIMAAAACAAEIADRASAIREAVSMLRSGDTLIVAGKGHE 459


>gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
 gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
          Length = 483

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/466 (47%), Positives = 304/466 (65%), Gaps = 12/466 (2%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F E I    +F M+     I  +++DSR +  G++FVA+ GN++DG  +I  AI +GA+A
Sbjct: 7   FTECIENSRLFSME-----ITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIKRGAQA 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV      L++FS       P+L V + R  L++ A+R YG  PE ++AVTGTSGK+SV 
Sbjct: 62  IVTDCNAVLENFS------VPVLRVLDVRHSLAIAAARFYGSQPEIVVAVTGTSGKTSVV 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           SF++QI    GL +  IG    +S    D+   TTP P+ L + L  +S++GVTH ++EA
Sbjct: 116 SFLRQIWTHVGLCAASIGTVGIVSPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTHAALEA 175

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGLDQ RLDG++L A +FTNLGRDH+DYH+  + Y  AKMRLF+ LLP+++PA+++AD
Sbjct: 176 SSHGLDQSRLDGVRLTAAAFTNLGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPALVFAD 235

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D YS++V+     A  R+L++G +GKFI + ++     KQ V   VE   + F  PL G 
Sbjct: 236 DIYSQKVIDIVTKARRRILTIGRKGKFITINRIEHQRLKQCVECRVENNIYTFDLPLAGN 295

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           FQV NAL+AAGL IA G+    V   LE L   PGR E VG       +Y+DYAH   +L
Sbjct: 296 FQVTNALMAAGLAIATGVSPKKVFHSLEILQGAPGRLELVGKTENNAPVYIDYAHKPEAL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L ++R  T GR+I+VFGCGGDRDQGKRP+MGKIA + ADI IVTDDNPR+E PEKIR
Sbjct: 356 EQVLLSVRPFTQGRLILVFGCGGDRDQGKRPLMGKIAENKADIVIVTDDNPRTEMPEKIR 415

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +I+   P  IE  +R EAI  A+ +L  +D L++AGKGHE   ++
Sbjct: 416 KDILQAAPRAIEIADRGEAISYAVGLLKAEDTLIIAGKGHENGQVI 461


>gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
 gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
          Length = 489

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/476 (49%), Positives = 316/476 (66%), Gaps = 13/476 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D+    FPEL  +L +  +   E  I  +++DSR    G +FVA+ G K DG  ++
Sbjct: 1   MNLRDISGNAFPEL-KELLLSEIGAIE--IGGITADSRKAAPGSLFVAVAGTKADGAAYV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA A+V   A         + ++ P+LVV + R +LSL ASR YGK P+ ++AV
Sbjct: 58  KDAVAKGAVAVVSGHA---------VEADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASFV+QI   +G ++ QIG T  I+   +D   LTTP P+ L   L+ L+S
Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+ L A  FTNLGRDH+DYH T + Y  AKMRLF+ L+ 
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + +  A  AG  V +VG  G+++ LK+V    +KQ + +  +G  
Sbjct: 229 KGAPAVIFADDPWSDKAIGAAREAGLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+ +A  L+ LEKL    GR E VG    G   Y
Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  TSGRII VFGCGGDRD+GKRPIMG++A  L+DI IVTDDN
Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PRSED   IR+E++    G +E G+R EAIR A+ ML+  D L+VAGKGHE   IV
Sbjct: 409 PRSEDAATIRSEVMAAAAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIV 464


>gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella bacilliformis KC583]
 gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella
           bacilliformis KC583]
          Length = 483

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/456 (48%), Positives = 290/456 (63%), Gaps = 7/456 (1%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  +S++SR I  G++FVA+ GNK DG  +I  AI +GA  +V    +  ++ S     
Sbjct: 20  KITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+L V + R  L+L A+R Y   PE +LAVTGTSGK+SV SF++QI Q  G  +  IG
Sbjct: 75  -VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASIG 133

Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +S    D   LTTP P+ L + L  L+ +GVTH ++EASSHGLDQ RLDG+ L A 
Sbjct: 134 TVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRLDGVNLAAA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNLGRDH+DYH   + Y  AKMRLF+ LLP ++PA+I ADD YS+EV+     AG R 
Sbjct: 194 AFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRRA 253

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L++G +G+FI + ++    +KQ V   +E   + F  PL G FQV NAL+AAGL I  G 
Sbjct: 254 LTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLAITTGS 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            S  V   L+KL   PGR E V        +YVDYAH   +LE +L   R  T GR+IVV
Sbjct: 314 SSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPGRLIVV 373

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGGDRDQGKRP+MGKIA+D ADI IVTDDNPR+E+PEKIR +I+   PG +E  +R E
Sbjct: 374 FGCGGDRDQGKRPLMGKIAVDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEIADRSE 433

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           AI  A+ +L   D L++AGKGHE   +V    +  S
Sbjct: 434 AIYYAVGLLEAGDTLIIAGKGHENGQVVGQETRPFS 469


>gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 489

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/471 (48%), Positives = 309/471 (65%), Gaps = 13/471 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR +  G  FVA+ G K DG  FI
Sbjct: 4   MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRKVMPGNAFVAVAGTKADGAGFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S A         + ++ P+  V   R+FLS+ A+R +G+ P+ ++AV
Sbjct: 61  VDAAGRGAAIAIASQA---------VDASIPVFAVKEPRRFLSIAAARFHGRQPDTMVAV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L   L+ L+ 
Sbjct: 112 TGTAGKTSVASFTRQIWAYAGHAAAMIGTTGVVSPTRNEYGSLTTPDPVSLHALLAELAG 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 172 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 231

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S + +K A +AG  + +VG +G ++ LK+V    +KQ   I + G+ 
Sbjct: 232 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+++ + +  LEKL    GR E VG    G   Y
Sbjct: 292 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKIAMAALEKLVGASGRLELVGHTKDGALAY 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 352 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 411

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSE+P  IRAEI+       E  +R  AIR A+ ML   D L+VAGKGHE
Sbjct: 412 PRSEEPASIRAEIMTAASCAAEIADRAMAIREAVGMLRSGDTLIVAGKGHE 462


>gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
 gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
          Length = 490

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG  F 
Sbjct: 3   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDMAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466


>gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
          Length = 484

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/474 (47%), Positives = 311/474 (65%), Gaps = 21/474 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKL+DL             I P++     + ++  +SSDSR ++ G IF A+ G+K DG 
Sbjct: 1   MKLRDLD-----------GILPVEGTASADLEVTGISSDSRQVKPGVIFFALAGSKADGS 49

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            +   A  +GA AIV +   ++           P+L VD+ R  L+L A+R +G  P+ +
Sbjct: 50  AYAADAARRGAVAIVTAKGSTVGGHP------IPVLAVDDPRLALALGAARFFGNQPQTM 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSY 176
           +AVTGTSGK+SVA+F +QI +++G ++  IG T  ++    +   LTTP P+ L + L  
Sbjct: 104 VAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLKE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+  GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  AK+RLF+ 
Sbjct: 164 LADAGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDT 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LLPK +PA+I+ADD +S   ++ A  AG  VL+VG  G F+ LK+V    ++Q+  +   
Sbjct: 224 LLPKGAPAVIFADDPWSAPTIQAARAAGLEVLTVGRHGDFLRLKRVEHERHRQRAEVEAN 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  ++   PL G+FQ+ NALV+AGL I+ GI +A  L  LEKL   PGR + VGT + G 
Sbjct: 284 GVLYEIDLPLAGDFQISNALVSAGLAISTGIPTAKALMSLEKLKGAPGRLDLVGTTANGA 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVT
Sbjct: 344 PVYVDYAHKPDALENVLTSVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DDNPRSE PE IRA I+   PG IE G+R +AI  A+ ML+  D L+VAGKGHE
Sbjct: 404 DDNPRSEVPETIRAAIMAAAPGAIEIGDRRKAIHDAVAMLDAGDTLIVAGKGHE 457


>gi|306844335|ref|ZP_07476927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
 gi|306275407|gb|EFM57148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
          Length = 488

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L+  P +  E +I  ++SDSR +Q G++F A+ G K DG  F 
Sbjct: 1   MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D N LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAVEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464


>gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
 gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
          Length = 486

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/476 (48%), Positives = 319/476 (67%), Gaps = 13/476 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D+    FPEL N+L +  +   E  I  +++DSR    G +FVA+ G K DG  ++
Sbjct: 1   MNLRDISGTAFPEL-NELLLSEIGAIE--IGGITADSRKAAPGSLFVAVAGTKADGAAYV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA A+V   A         + ++ P+L V + R +LSL ASR YGK PE ++AV
Sbjct: 58  KDAVAKGAVAVVSGHA---------VDADVPVLAVTDPRLYLSLAASRFYGKQPETMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASFV+QI   +G ++ QIG T  I+   +D   LTTP P+ L   L+ L++
Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAA 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL A  FTNLGRDH+DYH T + Y  AKMRLF+ L+ 
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + ++ A +AG  V +VG +G ++ LK+V    +KQ + +  +G  
Sbjct: 229 KGAPAVIFADDPWSDKAIRAAADAGLNVRTVGRKGDYLTLKRVEHFRHKQLIEVHHDGVI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PL G+FQV NALVAAGL ++ G+ +A  ++ LEKL    GR E VG    G   Y
Sbjct: 289 HEVDIPLAGDFQVANALVAAGLAMSTGVSAATAMKALEKLIGAAGRLELVGQTKNGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  TSGRII VFGCGGDRD+GKRPIMG++A  L+DI IVTDDN
Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PRSED   IR+E++   PG +E G+R EAIR A+ +L+  D L+VAGKGHE   IV
Sbjct: 409 PRSEDAATIRSEVMAAAPGALEIGDRAEAIRHAVSLLSNGDTLIVAGKGHEEGQIV 464


>gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis]
          Length = 483

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/456 (48%), Positives = 288/456 (63%), Gaps = 7/456 (1%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  +S++SR I  G++FVA+ GNK DG  +I  AI +GA  +V    +  ++ S     
Sbjct: 20  KITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+L V + R  L+L A+R Y   PE +LAVTGTSGK+SV SF++QI Q  G  +  IG
Sbjct: 75  -VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASIG 133

Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +S    D   LTTP P+ L + L  L+ +GVTH ++EASSHGL+Q RLDGI L A 
Sbjct: 134 TVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRLDGINLAAA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNLGRDH+DYH   + Y  AKMRLF+ LLP ++PA+I ADD YS+EV+     AG R 
Sbjct: 194 AFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRRA 253

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L++G +G+FI + ++    +KQ V   +E   + F  PL G FQV NAL+AAGL I  G 
Sbjct: 254 LTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLAITTGS 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            S  V   L+KL   PGR E V        +YVDYAH   +LE +L   R  T GR+IVV
Sbjct: 314 SSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPGRLIVV 373

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGGDRDQ KRP+MGK+ LD ADI IVTDDNPR+E+PEKIR +I+   PG +E  +R E
Sbjct: 374 FGCGGDRDQRKRPLMGKLQLDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEIADRSE 433

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           AI  A+ +L   D L++AGKGHE   +V    +  S
Sbjct: 434 AIYYAVGLLEAGDTLIIAGKGHENGQVVGQETRPFS 469


>gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
 gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
          Length = 483

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/448 (47%), Positives = 298/448 (66%), Gaps = 7/448 (1%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S+DSR I  G+IFVA+ G+++DG  +I  A+ +GA+AIV      L++ S     
Sbjct: 20  EITGISADSRQILPGYIFVALQGHQDDGKHYINDALKRGAQAIVTDCNVVLENLS----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+L V + R  L++ A+R YG  PE ++AVTGTSGK+SV SF++QI  + GL +  IG
Sbjct: 75  -VPLLRVLDARHSLAVAAARFYGSQPETVVAVTGTSGKTSVVSFLRQIWTKVGLCAASIG 133

Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +S    D   LTTP P++L + LS ++++GVTH ++EASSHGLDQ RLDG++L A 
Sbjct: 134 TLGVVSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTHAALEASSHGLDQCRLDGVRLTAA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNLGRDH+DYH + + Y  AKMRLF+ LLP+++ A+I+ADD YS++V+     A   V
Sbjct: 194 AFTNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASALIFADDIYSQKVIDTLTQARRHV 253

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L++G +G+FI + ++    +KQ V   +E   + F  PL G+FQV NAL+AAGL I+ GI
Sbjct: 254 LTIGRKGQFITINRIEHQRSKQCVECRLENNIYTFNLPLAGDFQVNNALMAAGLAISTGI 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               V   LE L   PGR E VG       +Y+DYAH   +LE +L ++R  T GR+I+V
Sbjct: 314 SPDKVFRSLETLQGAPGRLELVGKTENNASVYIDYAHKPEALEQVLLSVRPFTQGRLILV 373

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGGDRDQGKRP+MGKIA + ADI I+TDDNPR+E P KIR +I+   P  IE  +R E
Sbjct: 374 FGCGGDRDQGKRPLMGKIAENKADIVIITDDNPRTEMPAKIRKDILQAAPKAIEIADRGE 433

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           AI  A+ +L   D L++AGKGHE   I+
Sbjct: 434 AITYAVGLLKAGDTLIIAGKGHENGQII 461


>gi|110634362|ref|YP_674570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium sp. BNC1]
 gi|123162148|sp|Q11GS0|MURE_MESSB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110285346|gb|ABG63405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chelativorans sp. BNC1]
          Length = 483

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/445 (50%), Positives = 300/445 (67%), Gaps = 8/445 (1%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I+ ++SDSR + AG +F A+ G+K DG  +   A  +GA AI+     ++ D     
Sbjct: 19  ETTISGLASDSRRVNAGDLFFALQGSKADGAAYAADAAGRGAVAIIARPG-TVGDV---- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++  D+ R  L+L ++RLYG  P  ++AVTGTSGK+SVA+F +QI +++GL++  
Sbjct: 74  --GVPVIEADDPRHVLALASARLYGAQPATMVAVTGTSGKTSVAAFTRQIWEKAGLAAAS 131

Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG T  ++    +   LTTP P+ L K L  L+  GVTH S+EASSHGLDQ RLDG+KL 
Sbjct: 132 IGTTGVVAPGRDEYGELTTPDPVSLHKLLRELADAGVTHASMEASSHGLDQRRLDGVKLA 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           AG FTNLGRDH+DYH T + Y  +KMRLF+ LLPK +PA+I+ADD +S+   K A  AG 
Sbjct: 192 AGGFTNLGRDHMDYHPTVEHYHQSKMRLFKTLLPKGAPAVIFADDPWSEPTEKVALAAGL 251

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           ++L+VG +G F+ +K+V    ++Q+  I  EG  +D + PL G+FQV NALVAAGL I+ 
Sbjct: 252 QLLTVGRRGTFLTIKRVEHERHRQRTEIEHEGMIYDIMLPLAGDFQVGNALVAAGLAIST 311

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ +   +  LE L    GR E  GT   G +IYVDYAH  ++LE +L+ +R  T+GR+I
Sbjct: 312 GLPADKAVAALEHLKGASGRLELTGTTEDGAQIYVDYAHKPDALENVLQAVRPFTTGRVI 371

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           VVFGCGGDRD GKRPIMG+IA  LAD+ IVTDDNPRSE P +IR  I+  +P   E G+R
Sbjct: 372 VVFGCGGDRDPGKRPIMGEIARRLADVVIVTDDNPRSEVPAEIRRAILEAVPEATEIGDR 431

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHE 470
            EAIRTA+ MLN  D L+VAGKGHE
Sbjct: 432 REAIRTAVAMLNSGDTLIVAGKGHE 456


>gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. 1-1C]
          Length = 484

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/449 (47%), Positives = 296/449 (65%), Gaps = 8/449 (1%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S+DSR +  G++FVA+ GN+ DG  ++  AI +GA  I+  + +  ++ S     
Sbjct: 20  EITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFVFENLS----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++ V + R  L++ A+R Y   PE ++AVTGTSGK+SV SFV+QI +  G  +  IG
Sbjct: 75  -IPVIHVLDARHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIG 133

Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +S    D   LTTP P+ L + L  +++ +GVTH + EASSHGLDQ R+DG+ L A
Sbjct: 134 TVGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLAA 193

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH++ + YF+AKMRLF  LLP+++PA+I+ADD YS++V+     A  +
Sbjct: 194 AAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHRQ 253

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VL++G  GKFI L +V     KQ+V   +    + F  PL G+FQV NAL+AAGL IA  
Sbjct: 254 VLTIGRTGKFITLNRVEHQRLKQRVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIATN 313

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             S +V   LEKL   PGR E VG    G  IYVDYAH   +LE +L ++R  T GR+++
Sbjct: 314 APSDMVFRSLEKLQGAPGRLELVGNTEDGAPIYVDYAHKPEALEQMLLSVRPFTQGRLVL 373

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRDQGKR +MGKIA + ADI IVTDDNPR+E PEKIR +I+  +P  IE  +R 
Sbjct: 374 VFGCGGDRDQGKRALMGKIAGNKADIVIVTDDNPRTEAPEKIRKDILQAVPEAIEIADRG 433

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +AI  A+E+L   D L+VAGKGHE   I+
Sbjct: 434 QAIEYAVELLKAGDTLIVAGKGHENGQII 462


>gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
 gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
          Length = 483

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/447 (48%), Positives = 291/447 (65%), Gaps = 7/447 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S+DSR I  G++FVA+ GN+ DG  ++  AI +GA  IV    +  ++      S 
Sbjct: 21  ITGISADSRQILPGYVFVALKGNQRDGREYVNDAIKRGARVIVTDHNFVFEN------SL 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V N R  L++ A+R Y   PE ++AVTGTSGK+SV SF++QI +  G  +  IG 
Sbjct: 75  VPVVRVLNVRHSLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWKYVGCCAASIGT 134

Query: 150 TSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              +S    D   LTTP P+ L + L  ++++GVTH ++EASSHGLDQ R+DG++L A +
Sbjct: 135 VGVVSPKRHDLGSLTTPDPVMLQRLLCEIANEGVTHAALEASSHGLDQCRIDGVRLAAAA 194

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNLGRDH+DYH+  + YF+AKMRLF  LLP+++PA+I+ADD YS++V+     A  +VL
Sbjct: 195 FTNLGRDHMDYHKCIEDYFHAKMRLFNTLLPQDAPALIFADDIYSQKVIDIVRRAHRQVL 254

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           ++G  GKFI L +V     KQ V   +    + F  PL G+FQV NAL+AAGL IA    
Sbjct: 255 TIGRTGKFITLNRVEHQRLKQCVECRMGNNIYTFDLPLVGDFQVANALMAAGLAIATRAS 314

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +V   LEKL   PGR E VG    G  +YVDYAH   +LE +L ++R  T GR+I+VF
Sbjct: 315 PDMVFRSLEKLQGAPGRLELVGKTEDGAPVYVDYAHKPEALEQVLLSVRPFTQGRLILVF 374

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           GCGGDRDQGKR +MG IA + ADI IVTDDNPR+E PEKIR +I+  +P  IE  +R EA
Sbjct: 375 GCGGDRDQGKRALMGTIAGNKADIVIVTDDNPRTEAPEKIRKDILQAVPEAIEIADRAEA 434

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I  A+ +L   D L+VAGKGHE   I+
Sbjct: 435 IYYAVRLLKTGDTLIVAGKGHENGQII 461


>gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella schoenbuchensis R1]
          Length = 483

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/448 (47%), Positives = 287/448 (64%), Gaps = 7/448 (1%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +SSDSR +  G++FVA+ G + DG  ++  AI +GA  IV     +L+        
Sbjct: 20  EITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIVTDYNCALEGVY----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+L V + R  L++ A+R YG  PE + AVTGTSGK+SV SFV+QI + +G  +  IG
Sbjct: 75  -VPVLRVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTSVVSFVRQIWKHAGFCAASIG 133

Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +S    D   LTTP P+ L + L  ++ +GVTH ++EASSHGLDQ RLDG++L A 
Sbjct: 134 TVGVVSPKRNDYGSLTTPDPVMLQRLLCEIAGEGVTHAALEASSHGLDQGRLDGVRLAAA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNLGRDH+DYH   + Y  AKMRLF+ LLP ++PAII+ADD YS++V+     AG  V
Sbjct: 194 AFTNLGRDHMDYHPCVEDYLRAKMRLFDTLLPCDAPAIIFADDVYSQKVIDHVTRAGRPV 253

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L++G  GKFI + ++     KQ V   +    + F  PL GEFQV NAL+AAGL IA  +
Sbjct: 254 LTIGRSGKFITINRIEHQRLKQCVECRMGNDIYTFDLPLAGEFQVTNALMAAGLAIATNV 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             + V   L+KL   PGR E VG       +YVDYAH   +LE +L ++R  T GR+I+V
Sbjct: 314 PPSSVFRSLKKLQGAPGRLELVGNTKDNAFVYVDYAHKPEALEQVLLSVRPFTLGRLILV 373

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGGDRDQGKRP+MGKIA   ADI IVTDDNPR+EDP KIR +I+    G +E  +R E
Sbjct: 374 FGCGGDRDQGKRPLMGKIAASKADIVIVTDDNPRTEDPAKIRKDILQAASGAMEIADRGE 433

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           AI  A+ +L   D L++AGKGHE   I+
Sbjct: 434 AIDYAVRLLEAGDTLIIAGKGHENGQII 461


>gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 484

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/474 (48%), Positives = 308/474 (64%), Gaps = 21/474 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKL+DL             I P++     + ++  +SSDSR ++AG +F A+ G K DG 
Sbjct: 1   MKLRDLA-----------GILPVEGIASVDLEVTGISSDSRQVKAGVVFFALAGTKADGA 49

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           ++   A A+GA AIV     ++           P+L VD+ R  L+  A+R +GK PE +
Sbjct: 50  VYAEDAAARGAAAIVAGKGSTIAGLP------VPVLAVDDPRLALAQSAARYFGKQPEIM 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSY 176
           +AVTGTSGK+SVA+F +QI +++G ++  IG T  ++    D   LTTP P+ L + L  
Sbjct: 104 VAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNDYGSLTTPDPVALHQLLQE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+  GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  AK+RLF+ 
Sbjct: 164 LADAGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTIEDYHRAKLRLFDT 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LLPK +PA+I+ADD +S      A  AG  VL+VG  G F+ LK+V    ++Q+  +  +
Sbjct: 224 LLPKGAPAVIFADDPWSAPTTVAAKAAGLNVLTVGRHGDFLRLKRVEHERHRQRAEVEAD 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  ++   PL G+FQ+ NALV+AGL I+ G   A  L  LEKL   PGR + VGT   G 
Sbjct: 284 GVLYEIDLPLAGDFQISNALVSAGLAISTGTPVAKALMALEKLKGAPGRLDLVGTTGNGA 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +YVDYAH  ++LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVT
Sbjct: 344 PVYVDYAHKPDALENVLASVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIATRLADVVIVT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DDNPRSE PE IRA I+   PG IE G+R +AI  A+ ML+  D L+VAGKGHE
Sbjct: 404 DDNPRSEVPETIRAAILAAAPGAIEIGDRRQAIHEAVAMLHAGDTLIVAGKGHE 457


>gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 484

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/449 (47%), Positives = 293/449 (65%), Gaps = 8/449 (1%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S+DSR +  G++FVA+ GN+ DG  ++  AI +GA  I+  + +  ++ S     
Sbjct: 20  EITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFVFENLS----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++ V + R  L++ A+R Y   PE ++AVTGTSGK+SV SFV+QI +  G  +  IG
Sbjct: 75  -IPVIHVLDVRHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIG 133

Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +S    D   LTTP P+ L + L  +++ +GVTH + EASSHGLDQ R+DG+ L A
Sbjct: 134 TVGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLAA 193

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH++ + YF+AKMRLF  LLP+++PA+I+ADD YS++V+     A  +
Sbjct: 194 AAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHRQ 253

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VL++G  GKFI L +V     KQ V   +    + F  PL G+FQV NAL+AAGL IA  
Sbjct: 254 VLTIGRTGKFITLNRVEHQRLKQCVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIATN 313

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
               +V   LEKL   PGR E VG    G  +YVDYAH   +LE +L ++R  T GR+I+
Sbjct: 314 APPDMVFRSLEKLQGAPGRLELVGNTEDGAPVYVDYAHKPEALEQVLLSVRPFTQGRLIL 373

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRDQGKR +MGKIA + ADI IVTDDNPR+E PEKIR +I+  +P  IE  +R 
Sbjct: 374 VFGCGGDRDQGKRALMGKIAGNKADIMIVTDDNPRTEAPEKIRKDILQAVPEAIEIADRG 433

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +AI  A+ +L   D L+VAGKGHE   I+
Sbjct: 434 QAIEYAVGLLKAGDTLIVAGKGHENGQII 462


>gi|13471554|ref|NP_103120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
 gi|21362712|sp|Q98KA8|MURE_RHILO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14022296|dbj|BAB48906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
          Length = 484

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/474 (47%), Positives = 308/474 (64%), Gaps = 21/474 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKL+DL             + P++     + ++  +SSDSR ++ G +F A+ G K DG 
Sbjct: 1   MKLRDLA-----------GVLPVEGTASADLEVTGISSDSRQVKPGVVFFALAGTKADGA 49

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            +   A  +GA A+V   + S+           P+L VD+ R  L+L A+R +GK P  +
Sbjct: 50  AYAADAARRGALAVVAGKSNSVAGLP------VPVLTVDDPRLALALSAARYFGKQPRTM 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSY 176
           +AVTGTSGK+SVA+F +QI +++G ++  IG T  ++    +   LTTP P+ L + L  
Sbjct: 104 VAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLRE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+  GVT+ S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  AK+RLF+ 
Sbjct: 164 LADAGVTYASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDT 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LLPK +PA+I+ADD +S   ++ A  AG  VL+VG  G F+ LK+V    ++Q+  +  E
Sbjct: 224 LLPKGAPAVIFADDPWSAPTIQAAQAAGLNVLTVGRHGDFLTLKRVEHERHRQRAEVEAE 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  ++   PL G+FQ+ NALV+AGL I+ G   A  L  LEKL   PGR + VGT   G 
Sbjct: 284 GVLYEIDLPLAGDFQISNALVSAGLAISTGTPVAKALAALEKLKGAPGRLDLVGTTVSGA 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVT
Sbjct: 344 PVYVDYAHKPDALENVLASVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DDNPRSE PE IRA I+   PG IE G+R +AI  A+ ML+  D L+VAGKGHE
Sbjct: 404 DDNPRSEVPETIRAAILAAAPGAIEIGDRRKAIHEAVGMLHAGDTLIVAGKGHE 457


>gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
          Length = 489

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/472 (46%), Positives = 306/472 (64%), Gaps = 12/472 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  LI    P  ++  S   + +    +  +++DSR ++   +F A+ G K DG  F+
Sbjct: 1   MNLSALISALPPGTLSAPSSANLDF---SVTGLTADSRVVEPSNLFFALAGVKTDGARFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
            +AI++GA AIV +S   +  D  A +RS+ P          L+  A+  +G  P  + A
Sbjct: 58  QEAISKGAAAIVAASGAGISTDGVAVLRSDDPR-------LALARMAAAFFGPQPRVMAA 110

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+SVASF++QI   +G  +  +G T  ++   ++   LTTP P+ L + L+ L+
Sbjct: 111 VTGTAGKTSVASFLRQIWAHAGEKAAMLGTTGVVAPGRSEYGSLTTPDPVALHRLLAELA 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S+GVTH ++EASSHGLDQ RLDG+ L    FTNLGRDH+DYH T + Y  AKMRLF+ LL
Sbjct: 171 SEGVTHAAMEASSHGLDQRRLDGVMLSVAGFTNLGRDHMDYHPTMEDYMAAKMRLFDTLL 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           PK +PA+I+ADD +S++ ++ A  AG RVL+VG +G F+ LK+V  + +KQ   + ++G+
Sbjct: 231 PKGAPAVIFADDPWSEQAVEVAERAGARVLTVGRKGGFLSLKRVEHLRHKQIAEVHLDGR 290

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            F+   PL G+FQ+ NALVAAG+ IA G  +   +  LE L    GR E VG+   G   
Sbjct: 291 IFEIHVPLAGDFQISNALVAAGMAIATGTGADQAMAALEHLTGASGRLELVGSTGDGAPA 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAH   ++E +L  +R  T+GRII+VFGCGGDRD+GKRPIMG IA  LAD+ IVTDD
Sbjct: 351 YVDYAHKPEAMENVLDAVRPFTTGRIIMVFGCGGDRDRGKRPIMGSIATKLADVVIVTDD 410

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPR+EDP +IR+EI+   PG  E  +R EAIRTA+EML   D L+VAGKGHE
Sbjct: 411 NPRTEDPAEIRSEILVAAPGATEIADRAEAIRTAVEMLEAGDTLIVAGKGHE 462


>gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
 gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
          Length = 483

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/467 (45%), Positives = 290/467 (62%), Gaps = 8/467 (1%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   L N ++  P    + +I+ ++ DSR +  G++FVA+ G+K DG  FI  A A+GA 
Sbjct: 2   NLARLANGIAHAPDNLDKTEISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKGAV 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++ SS        A + ++ P++  DN R   +  A+R Y K PE ++AVTGT+GK+S+
Sbjct: 62  AVLTSS-------DAVVETDLPVIRADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSI 114

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           ASF++QI   +GL +  IG T  +S    D   LTTP P+ LA+ L+ L  +GVTH S+E
Sbjct: 115 ASFLRQIWTATGLKAASIGTTGVVSPSRNDYGTLTTPDPVALAELLASLEGEGVTHASME 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHG+DQ RLDG++L AG FTNLG DH+DYH   ++YF AKM LF  LLPK +PA+I  
Sbjct: 175 ASSHGIDQFRLDGVRLAAGGFTNLGHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINT 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD +S   ++ A   GC V +VG  G  + LK++     +Q   +         + PL G
Sbjct: 235 DDQWSGRAIEVATGVGCDVRTVGRNGSLLALKRLEHERERQVAEVKTPDGIQRVVLPLAG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           EFQ+ NALVAAGL I  G      LE LE L    GR E  G  + G  ++VDYAH   +
Sbjct: 295 EFQMSNALVAAGLAIVTGTPVKAALETLENLKGASGRLEKAGMTAGGVPVFVDYAHKPEA 354

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R  T+GR+I+V GCGGDRD+ KRP+MG+IA  LAD+ IVTDDNPRSEDP  I
Sbjct: 355 LEHVLRAVRPFTTGRVILVMGCGGDRDKTKRPMMGEIANRLADVVIVTDDNPRSEDPAVI 414

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R+EI+       E G+R EAIR A+      D ++VAGKGHET  +V
Sbjct: 415 RSEIMAAAGEAREIGDRREAIRAAVGEARTGDTVIVAGKGHETGQMV 461


>gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. AR 15-3]
          Length = 484

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/449 (46%), Positives = 290/449 (64%), Gaps = 8/449 (1%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S+DSR +  G++FVA+ GN+ DG  ++  AI +GA  I+  + +  ++ S     
Sbjct: 20  EITGISADSRQVLPGYVFVALKGNQRDGREYVNDAIKRGARVIITDNNFVFENLS----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++ V   R  L++ A+R Y   PE ++AVTGTSGK+SV SF++QI +  G  +  IG
Sbjct: 75  -IPVIHVSEVRHRLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWEYVGFCAASIG 133

Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +S    D   LTTP P+ L + L  +++ +GVTH + EASSHG+DQ R+DG+ L A
Sbjct: 134 TVGVVSPKRHDIGFLTTPDPVMLQRLLYEIANDEGVTHAAFEASSHGIDQCRIDGVHLAA 193

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH   + YF+AKMRLF  +LP+++PA+I+ADD YS++V+     A  +
Sbjct: 194 AAFTNLGRDHMDYHGCIEDYFHAKMRLFNTILPQDAPALIFADDVYSQKVIDIVRQAHRK 253

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VL++G  GKFI L +V     KQ+V   +    + F  P  G+FQV NAL+AAGL IA  
Sbjct: 254 VLTIGRTGKFITLNRVEHQRLKQRVECRMGNNIYTFDLPFSGDFQVANALMAAGLAIATN 313

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
               +V   LEKL   PGR E VG    G  +YVDYAH   +LE +L ++R  T GR+I+
Sbjct: 314 APPDMVFRSLEKLQGPPGRLELVGKTKDGAPVYVDYAHKPEALEQVLLSVRPFTQGRLIL 373

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRD+GKR +MGKIA + AD+ IVTDDNPR+E PEKIR +I+  +P  IE  +R 
Sbjct: 374 VFGCGGDRDRGKRALMGKIAENKADVVIVTDDNPRTEAPEKIRKDILQVVPEAIEIADRG 433

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +AI  A+ +L   D L+VAGKGHE   I+
Sbjct: 434 KAIDYAVRLLKAGDTLIVAGKGHENGQII 462


>gi|90418199|ref|ZP_01226111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337871|gb|EAS51522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 482

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/443 (46%), Positives = 287/443 (64%), Gaps = 8/443 (1%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG++F A+ G++ DG  F+  A A+GA AI+           A I +  P+L  
Sbjct: 27  DSRETGAGFLFAALAGSRADGAGFVADAEARGAAAILAGE-------GAEIATTLPVLRA 79

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS- 154
            + R+ ++L A+R +G  PE+++A+TGT+GK+S+A+F +QI  R GL++  +G T  +S 
Sbjct: 80  ADPRRAIALMAARFHGAQPEHVVAITGTAGKTSIATFTRQIWARCGLAAASVGTTGVVSP 139

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           S  +   LTTP PI L + ++ L+ +GVTH ++EASSHG+DQ RLDG++L A +F+NLG 
Sbjct: 140 SRDEYGSLTTPDPIALMRLMAELAGEGVTHAAMEASSHGIDQRRLDGVRLAAAAFSNLGH 199

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+DYH   ++YF AKMRLF  LLPK +PA+I+ADD +S   +  A + G +V++VG  G
Sbjct: 200 DHLDYHPDIESYFAAKMRLFTTLLPKGAPAVIFADDRWSGRAIDVATSVGAKVMTVGRGG 259

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            F+ LK++     +Q   I  EG+    + PL GEFQ+ NALVAAGL IA G+ +A  L 
Sbjct: 260 NFLTLKRLELERQRQIAEIEAEGRIHRVVLPLAGEFQMANALVAAGLAIATGVATADALA 319

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            LE L    GR +  GT + G  ++VDYAH   +LE +L  +R  T+GR++VV GCGGDR
Sbjct: 320 ALEHLKGAAGRLDLAGTTADGAPVFVDYAHKPEALENVLAAVRPFTTGRVVVVIGCGGDR 379

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           D+ KRP+MG+IA  LADI IVTDDNPRSE+P  IRAEI+    G  E G+R  AIR A+ 
Sbjct: 380 DRAKRPMMGEIAARLADIVIVTDDNPRSEEPAAIRAEIMTAANGAREIGDRRAAIREAVA 439

Query: 455 MLNKQDVLVVAGKGHETVHIVTN 477
                D +V+AGKGHE    V  
Sbjct: 440 SARTGDTVVIAGKGHEVGQTVAG 462


>gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Ahrensia sp. R2A130]
 gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Ahrensia sp. R2A130]
          Length = 1015

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/498 (43%), Positives = 297/498 (59%), Gaps = 17/498 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+    PE  ++  +  +      I  V+ DSR ++ G +F+A+ G+ +DG  F+
Sbjct: 1   MRLNDLLGGGLPE-ASRDDVGALD-----ITNVTVDSRKVKPGGLFIAVSGSAQDGAKFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI-RSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           P A+  GA A+       L D  A I + + P+L   N RK L+  ASR + + PE I A
Sbjct: 55  PMAVENGAVAV-------LADRDADIGKISVPVLRNGNIRKALANIASRFHPRQPEIIAA 107

Query: 120 VTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYL 177
           VTGT+GK+SVASF++QI   +       IG T   +    D   LTTP P+ L + L  L
Sbjct: 108 VTGTAGKTSVASFLRQIWGHKDDAVPAMIGTTGVFAPGRSDYGSLTTPDPVKLHELLDEL 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +GVTH ++EASSHGLDQ RLDG++L    FTNLGRDH+DYH   + Y  AK+RLF +L
Sbjct: 168 AGEGVTHCAMEASSHGLDQMRLDGVRLAVAGFTNLGRDHLDYHADIEEYLTAKLRLFGDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L    PA+IYADD +S  V+  A   G  V +VG +G+FI +K++      Q   +  +G
Sbjct: 228 LKPGQPAVIYADDEFSGRVIDHAEFHGLDVKTVGREGEFIAVKRIEQHRTSQVAEVVCDG 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + +    PL GEFQ+ NALVAAG+ IA G+++      L  L    GR E +G  + G  
Sbjct: 288 ETYRVELPLAGEFQLANALVAAGMAIASGMEAKAAFIALTTLEGASGRLELIGKTTEGAA 347

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            YVDYAH   +LE +L  +R  T+G++++VFGCGGDRD GKR IMG+IA  +AD  IVTD
Sbjct: 348 CYVDYAHKPEALENVLAALRPYTTGQLVLVFGCGGDRDPGKRAIMGEIAARMADRVIVTD 407

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSE+P  IRA I+   P   E G+R EAI  A+E L   D L+VAGKGHE   IV +
Sbjct: 408 DNPRSENPGSIRAAIMEAAPDATEIGDRYEAIINAVEGLGSGDTLIVAGKGHEEGQIVGD 467

Query: 478 GEKKMSVDCDIIREILGL 495
                S D  ++RE L L
Sbjct: 468 TVLPFS-DHAVLREALAL 484



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 157/383 (40%), Gaps = 38/383 (9%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P    E  I  +S D+R +Q G  + AI G+  DGH F+  A A GA   VV+     +
Sbjct: 557 LPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVAAAHAAGATVSVVA-----K 611

Query: 81  DFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           D+   +  +   +LVVD+    L         +    ++A+TG+ GK++    +     R
Sbjct: 612 DWVGRLEGDCGRLLVVDDVLHALVRLGLAARARTSAQVVAITGSVGKTTTKEML-----R 666

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQH 197
           +GL++      + ++SF  +N    P  +    A S  +    G+ H         L Q 
Sbjct: 667 TGLAACG-HVHAAVASF--NNHWGVPLTLARMPADSDFAVIEIGMNH---PGEITPLVQM 720

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               + +I     N+   H+    +     +AK  +F+ L+P  + A++ ADD     ++
Sbjct: 721 TRPHVAII----NNVAAVHLGAFDSVDEIAHAKSEIFDGLIPGGT-AVLNADDERLPIML 775

Query: 258 KRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            RA  A     VL        + L+K+  + +   ++ +V G+        PG     NA
Sbjct: 776 DRATEAEVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNA 835

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEM 371
           LV   +      D A V   L ++  V GR +     VG   +G  + +D ++ +N   M
Sbjct: 836 LVVLAVAKLFDADLAKVSLALAEMEAVKGRGQQHKLSVG---QGAAVLIDESYNANPTSM 892

Query: 372 -----ILKNIRTITSGRIIVVFG 389
                +L +      GR I V G
Sbjct: 893 AASLDLLGSREPAPGGRRIAVLG 915


>gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate
           ligase-like protein [polymorphum gilvum SL003B-26A1]
 gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase, putative-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 489

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/466 (43%), Positives = 289/466 (62%), Gaps = 3/466 (0%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            ++ +++DSR ++ G++F A+ G   DG  F+P+A+ QGA A V++ A      + T+  
Sbjct: 20  SVSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAVA-VLTDAQGAAALAGTMPD 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P+LV  + R+ L+L A+R YG+ P  ++AVTGTSGK+SVA FV+QI + +G +S  +G
Sbjct: 79  SVPVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVAHFVRQIFEHAGHASASLG 138

Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T++S  +    LTTP P+ L   L+ L+ +G+TH ++EASSHGL+QHRLDG++L+AG
Sbjct: 139 TIGTVTSRGRAYGGLTTPDPVSLHAELARLADEGITHAALEASSHGLEQHRLDGVRLVAG 198

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNLGRDH+DYH T++ Y  AK+RLF +LLP     ++   +  +  V+  A   G  +
Sbjct: 199 AFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPGERCADRVLAVARERGLHI 258

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +VG +G  + L  +      Q++T+     D+    PL G FQV NAL+AAGL I  G 
Sbjct: 259 FTVGERGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAGRFQVSNALIAAGLAITAGE 318

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +  VL  LE L   PGR E VG  + G  ++VDYAH  ++LE  L  +R  T GR+ VV
Sbjct: 319 ATGAVLRALEDLEGAPGRLELVGRKANGALVFVDYAHKPDALENALAALRPFTCGRLFVV 378

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            G GGDRD GKRP+MG  A   AD+ IVTDDNPRSEDP  IR  ++ G P  +E G+R  
Sbjct: 379 IGAGGDRDPGKRPLMGAAAARHADVVIVTDDNPRSEDPAAIRKAVLAGAPDALEIGDRGA 438

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AI  A+  L   DVL VAGKGHET  IV +     S D D +R  L
Sbjct: 439 AIAEAVARLEAGDVLCVAGKGHETGQIVGDTVLPFS-DHDAVRAAL 483


>gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 481

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/470 (45%), Positives = 290/470 (61%), Gaps = 16/470 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +++ S  +  G IF A+ G+K DG  ++P A+ +GA AIV+     +     T+ +
Sbjct: 21  EVTGITAASAAVGKGAIFAALPGSKVDGASYVPDALQRGASAIVIGKGKGV-----TVPA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ++ VDN R  L+  A++  G+ P   +AVTGTSGK+SVA F +QI    G  +  +G
Sbjct: 76  GVALIEVDNPRAALAKIAAKFAGRQPRCAVAVTGTSGKTSVADFTRQIFTSLGRKAASVG 135

Query: 149 PTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TI     D      LTTP P+ L   L+ L+ +GVTH++ EASSHGLDQ+RLDG++L
Sbjct: 136 ---TIGIVKPDGAVYGSLTTPDPVTLHTTLASLADEGVTHLAFEASSHGLDQNRLDGVEL 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A +FTNLGRDH+DYH T++AY  AK+RLF ELL    PA+I  D A S +V   A   G
Sbjct: 193 SAAAFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQPGQPAVINTDGARSADVAAAAKARG 252

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            RV++VG  G  +    +     +Q++ I  +G+ FD   PL G +QV NALVAAGL IA
Sbjct: 253 LRVMTVGQSGDTLKRTSLTRDGFQQRIGILFDGRSFDVRLPLVGAYQVENALVAAGLAIA 312

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G  +  VL  LE L  VPGR E +G  + GG   VDYAH   +L   L   R   +GR+
Sbjct: 313 TGEKADAVLAALESLKGVPGRLEIIGERN-GGLAVVDYAHKPEALAAALDACRPFVTGRL 371

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           I VFGCGGDRD+GKRPIMG+I+++ AD+ IVTDDNPRSED   IRAEI+ G  G  E GN
Sbjct: 372 ISVFGCGGDRDKGKRPIMGRISVEKADVTIVTDDNPRSEDAASIRAEILAGAAGAREIGN 431

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREIL 493
           R EAI TA+ M+   DV ++AGKGHET  IV  G++ +   D D +R+ L
Sbjct: 432 RAEAIATAVSMMQPGDVALIAGKGHETGQIV--GDRILPFSDHDEVRKAL 479


>gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 486

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/498 (43%), Positives = 296/498 (59%), Gaps = 22/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L    FP+ +    I P  +  R+I  ++ DSR +    +F A+ G K DG  + 
Sbjct: 1   MRLDAL----FPDAL----IEPPAFGAREIAGLACDSRLVAKDQVFFAVPGTKADGLTYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILA 119
           P+A+ +GA A+V          SA++   T  LV V + R  L++ ++R Y + PE ++A
Sbjct: 53  PEAVRRGALAVVTEQ-------SASVPFETAALVKVADVRSALAIASARFYARQPETVVA 105

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGTSGK+SVA+F +QI    G  +  +G    ++   A    LTTP PI L + L  L+
Sbjct: 106 VTGTSGKTSVAAFARQIWASLGFKAASVGTLGVVAPDGASYGGLTTPDPISLHRTLDELA 165

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GVTH+++EASSHGLDQHRLD ++L A  FTNL RDH+DYH T +AYF AK+ LF  +L
Sbjct: 166 GAGVTHLALEASSHGLDQHRLDYVRLKAAGFTNLSRDHLDYHPTLEAYFQAKLLLFTHVL 225

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P +   ++ AD +   EV+  A   G +V S+G+ G+ +HL +         + ++  GK
Sbjct: 226 PADGTVVVDADSSAGHEVIDVAKARGLKVFSLGFAGETLHLLEARPEAAATLLRLTFAGK 285

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D+    PL G FQ  NAL+AAGLCI+ G     V   LE+L   PGR E VG   RG  I
Sbjct: 286 DWALRLPLVGSFQAANALMAAGLCISTGAAPDAVFAALERLEGAPGRLEKVG-ERRGASI 344

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +VDYAH  ++LE  L+ +R  T  R+IV+FGCGGDRD GKRP+MG+IA  LAD  IVTDD
Sbjct: 345 FVDYAHKPDALEKALQALRPFTQKRLIVIFGCGGDRDAGKRPLMGEIAARLADHVIVTDD 404

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSEDP+ IR  I+ G    P   E G+R  AI++ I ML   D+L++AGKGHET  I+
Sbjct: 405 NPRSEDPDLIRKAILQGAGSGPHIREIGDREAAIKSGIGMLEPGDLLLIAGKGHETGQIL 464

Query: 476 TNGEKKMSVDCDIIREIL 493
            +     S D D  R  L
Sbjct: 465 ADRTLPFS-DRDCARAAL 481


>gi|307944899|ref|ZP_07660236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
 gi|307771823|gb|EFO31047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
          Length = 489

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/457 (44%), Positives = 280/457 (61%), Gaps = 2/457 (0%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           I P       I  +++DSR I+ G++F A+ G   DG  F  +A+  GA A++     + 
Sbjct: 11  IVPAAGSTVSITGLTADSRAIKPGFLFAALKGTHVDGADFAAKAVGAGAVAVLCERDAA- 69

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  +  +  +   DN R+  +L A+R +G  PE ++AVTGTSGK+SVA FV+QI Q 
Sbjct: 70  DRLAQELSKDVVLWPSDNPRRDFALMAARFHGAQPEVMVAVTGTSGKTSVAHFVRQIFQA 129

Query: 140 SGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G +S  +G   T+++  Q    LTTP P+ L   L+ LS +G+TH ++EASSHGLDQHR
Sbjct: 130 AGHASASLGTIGTVTADGQSYGGLTTPDPVSLHAELARLSKEGITHTALEASSHGLDQHR 189

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LDG++L+A  FTNLGRDH+DYH T + Y  AK+RLF +LL K +P ++   + Y+  V+ 
Sbjct: 190 LDGVRLVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLLKGAPVVVEPSEPYADRVIA 249

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G  V SVG  G+ I L K+      Q++ +   G+    L PL G FQV NALVA
Sbjct: 250 VAQERGLPVFSVGEAGENIRLAKLTPTAGGQELVVEAGGQTTTVLLPLIGRFQVSNALVA 309

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AGLCI  G+     +  L +L   PGR EF G +  GG +Y+DYAH  ++LE  L  +R 
Sbjct: 310 AGLCICAGVAPDEAIAALAELKGAPGRLEFAGRSQTGGTVYIDYAHKPDALENALAALRP 369

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
             SG++ VV G GGDRD GKR IMG+++   AD+ IVTDDNPR+EDP  IR  ++ G PG
Sbjct: 370 FASGQLSVVIGAGGDRDPGKREIMGRVSQVGADLVIVTDDNPRTEDPATIRKAVLSGAPG 429

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +E G+R EAIR  +  L   D+L VAGKGHET  I+
Sbjct: 430 ALEIGDRREAIREGVRRLKSGDILCVAGKGHETGQII 466


>gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 480

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/485 (42%), Positives = 284/485 (58%), Gaps = 13/485 (2%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D P+  + LSI            +++DSR +Q G++F A  G+  DG  F+P+A+   A 
Sbjct: 2   DLPDTADGLSI----------EGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAV 51

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++ ++  + +   A +     +L  D  R   S  A+R YG+ P+ I+AVTGT+GK+SV
Sbjct: 52  AVLCAT-NAAEAVRALVPPTVAVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSV 110

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A FV+QI Q +G  +  +G    I    +    LTTP P+ L K L+ L+++G+ + ++E
Sbjct: 111 AHFVRQIFQAAGHPAASLGTLGIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALE 170

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGLDQ+RLDG++L A +FTNLGRDH+DYH T + Y  AK+RLF ELLP     ++  
Sbjct: 171 ASSHGLDQYRLDGVRLTAAAFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDP 230

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            + Y+  V+  A   G  V +VG  GK + L  +      Q +T+     ++    PL G
Sbjct: 231 GEKYTDRVLAIAEERGLPVFTVGETGKDLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIG 290

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQV NAL+AAGL I  GID+   L  LE L   PGR E  GT   GG ++VDYAH  ++
Sbjct: 291 RFQVSNALIAAGLAITAGIDAGAALRALENLKGAPGRLELAGTTPAGGMVFVDYAHKPDA 350

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L+  L  ++    G + VV G GGDRD GKRP+MG+ A   AD+ IVTDDNPRSEDP  I
Sbjct: 351 LDKALAALKPFAEGSLSVVVGAGGDRDPGKRPLMGEAAARHADLVIVTDDNPRSEDPATI 410

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           R  ++ G PG +E G+R EAI   I  L   D+L VAGKGHET  IV +     S D D 
Sbjct: 411 RKAVLAGAPGGLEIGDRAEAIAEGIRRLKSGDILCVAGKGHETGQIVGDTVIPFS-DHDS 469

Query: 489 IREIL 493
           +R+ L
Sbjct: 470 VRQAL 474


>gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
 gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
          Length = 485

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/474 (45%), Positives = 282/474 (59%), Gaps = 18/474 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+SDSR +  G +FVA+ G   DG  FIPQA+AQGA A++  +         T  S 
Sbjct: 20  ITGVTSDSRKVAPGALFVALPGTAADGRAFIPQALAQGAAAVLAPTD--------TPDSA 71

Query: 90  TPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P+LV   + R+  ++ A   YG  P   +AVTGT+GK+SVA+F +QI    G  S  +G
Sbjct: 72  APVLVTSGDVRRAYAIAARGFYGAQPRTCVAVTGTNGKTSVAAFCRQIWAGLGHKSASMG 131

Query: 149 PTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
               +              LT+P     A+ ++ L+++ VTHV+VEASSHG+DQ RLDG+
Sbjct: 132 TLGVVGQKGDRTYALTGPGLTSPDAAEAARLMAELAAKDVTHVAVEASSHGIDQRRLDGV 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAH 261
            L A +FTNL +DH+DYH T   Y  AKMRLFE LLP+   A++ AD DAYS      + 
Sbjct: 192 ALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFEALLPRGRTAVLNADSDAYSA-FAAASI 250

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            AG  V+ VG +G+ + L    A    Q++T+ V G   D L PL G FQ  NALVAAGL
Sbjct: 251 MAGLGVMGVGERGRDLALIGRQATPEGQRLTLDVRGDVRDILLPLAGAFQASNALVAAGL 310

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           CIA G     V+  LE L    GR + +   +  G +YVDYAHT + LE +L  +R   +
Sbjct: 311 CIAAGDRPDEVISALEGLTGAQGRLQRIAAETGRGEVYVDYAHTPDGLETVLTALRPHAT 370

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR+IVVFG GGDRD+GKRP+MG+IA  LAD+AIVTDDNPRSEDP  IRA++  G P  +E
Sbjct: 371 GRLIVVFGAGGDRDRGKRPLMGEIAGRLADVAIVTDDNPRSEDPASIRAQVRAGCPEALE 430

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            G+R  AI  AIEM+   DV+V+AGKGHE   IV  G      D  +  E L L
Sbjct: 431 IGDRRAAIEAAIEMMRDGDVVVIAGKGHEQGQIV-GGTTHPFDDATVASEALSL 483


>gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
 gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
          Length = 490

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/468 (44%), Positives = 279/468 (59%), Gaps = 12/468 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR +    +F A+ G K DG  F PQA  +GA AIV       +  SA     
Sbjct: 21  VAALSCDSRKVAPKALFFAVPGTKADGLAFAPQAARKGAVAIVA------EGKSAASIEG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V + R  L+  A+R + + PE I+A+TGTSGK+SVA+FV+Q+   +G ++  +G 
Sbjct: 75  APVIAVADVRAALAEAAARFFPRQPETIVAITGTSGKTSVAAFVRQLFAANGFAAASLGT 134

Query: 150 TSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              ++        LTTP PI L + L  L++ GVTH+++EASSHGL Q RLDG++L AG+
Sbjct: 135 LGVVAPNGSVYGSLTTPDPINLHETLDGLAASGVTHLALEASSHGLTQRRLDGVRLKAGA 194

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T   Y  AK+ LF+ LL    PA+I AD   + EV+      G ++ 
Sbjct: 195 FTNLSRDHLDYHATMAEYLAAKLELFQRLLDPGQPAVIDADSDVATEVIAACKARGLKIF 254

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +VG +G+ + L +         + ++ EG+ +    PL G FQ  NALVAAGL I  G+ 
Sbjct: 255 TVGSKGESLKLLRATPKAAATGIEVAHEGRIYKLELPLAGAFQTSNALVAAGLAIVCGVS 314

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +   L  LE +   PGR E VG  + G  IYVDYAH  ++LE +L  +R   +GR++VVF
Sbjct: 315 AERALTALEHIEGAPGRLEKVGERN-GAPIYVDYAHKPDALEKVLCALRPAVAGRLLVVF 373

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNR 445
           GCGGDRD GKRPIMG+IA  LAD+ IVTDDNPRSEDP  IRA I+ G  G     E G+R
Sbjct: 374 GCGGDRDAGKRPIMGEIAAKLADLVIVTDDNPRSEDPASIRAAILKGAAGAATVREIGDR 433

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR  +  LN  D L++AGKGHET  I+ +     S D D  R  L
Sbjct: 434 ASAIRAGVAALNSGDCLLIAGKGHETGQIIGDVTLPFS-DADCARAAL 480


>gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 483

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/483 (44%), Positives = 293/483 (60%), Gaps = 32/483 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L DL+ +D       ++  P+      I  V++DSR + +G +FVA+ G   DG  FI
Sbjct: 4   IRLSDLLRRD-------VAADPV------ITGVTADSRKVTSGSLFVALPGTAADGRAFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILA 119
           PQA++QGA A++       QD   T     P+LV   + R+  +L A   YG  P   +A
Sbjct: 51  PQALSQGAAAVLAP-----QD---TPDGAAPLLVRSGDVRRAYALAARGFYGAQPATCVA 102

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGP------TSTISSFAQDNRLTTPSPIYLAKA 173
           VTGT+GK+SVA+F +QI    G+ +  +G       + +I+       LT+P     A+ 
Sbjct: 103 VTGTNGKTSVAAFCRQIWAALGIKAASMGTLGVVAQSGSITESLTPPGLTSPDAGDAARL 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ L+  GVTH+++EASSHG+DQ RLDG+ L A +FTNL +DH+DYH    AY  AK+RL
Sbjct: 163 LATLAEGGVTHLALEASSHGIDQRRLDGVTLKAAAFTNLTQDHLDYHGDMAAYRAAKLRL 222

Query: 234 FEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           FE LLP+   A++ AD DAY+        + G  V+ VG +G+ + L +  A+   Q++ 
Sbjct: 223 FESLLPRGRTAVLNADSDAYNAFAAASIMS-GLGVMGVGERGRDLSLIERRAVPEGQRLI 281

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + V G   D L PL G FQ  NALVAAGLCIA G D+A VL  LEK+    GR + V   
Sbjct: 282 LDVRGDRHDVLLPLAGAFQASNALVAAGLCIAAGEDAARVLHALEKITGAAGRLQRVSGG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              G  YVDYAHT + LE +LK +R   +GR+IVVFG GGDRD+GKRP+MG IA  LAD+
Sbjct: 342 R--GEAYVDYAHTPDGLETVLKALRPHATGRLIVVFGAGGDRDKGKRPLMGGIAGRLADV 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           AIVTDDNPRSEDP  IRA++  G P   E G+R  AIR A+ M+   DV+VVAGKGHE  
Sbjct: 400 AIVTDDNPRSEDPAVIRAQVRAGCPSAREVGDRRAAIREAVAMMRDGDVVVVAGKGHEQG 459

Query: 473 HIV 475
            IV
Sbjct: 460 QIV 462


>gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
 gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
          Length = 480

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/466 (44%), Positives = 286/466 (61%), Gaps = 11/466 (2%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL +  + F  Q  E  +  ++ DSR ++ G +F A+ G+K DG  FI  AI  GA A+V
Sbjct: 5   ELFSGDATFDPQTSELAVAGLAVDSRAVKPGDVFFALGGSKTDGARFIGAAIEAGAVAVV 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
              A+S+         + P++V  N R+ L+L A+  Y + P+ I AVTGTSGK+SVA+F
Sbjct: 65  ADHAHSV---------SVPVIVTSNPRRALALAAAAFYPRQPQTIAAVTGTSGKTSVAAF 115

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +Q+    G  +  +G    +S        LTTP P+ L +AL  L+  GVTH+++EASS
Sbjct: 116 TRQLWDSLGYDAASLGTIGIVSRHRNVYGSLTTPDPVALHRALDELAGDGVTHLALEASS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQHRLDG+++ A +FTNL RDH+DYH T + Y  AK+RLF +L P+ +PA+I AD  
Sbjct: 176 HGLDQHRLDGVRIAAAAFTNLSRDHMDYHPTVEHYLAAKLRLFTDLAPEGAPAVIAADHE 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +S  V+  A      V+++G +G+ I L         Q++TI   G+      PL GEFQ
Sbjct: 236 HSAAVIAAARARKLDVITIGRKGEGIRLVDATIDGFGQKMTIQHRGQTHRLRLPLVGEFQ 295

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NALVAAGL IA G D+      LE+L    GR E +G + RG  ++VDYAH  ++L  
Sbjct: 296 IENALVAAGLVIATGGDATKTFSALEQLEGAKGRLELIG-DCRGAPVFVDYAHKPDALMK 354

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R    GR++VVFG GGDRD GKRP+MG IA+  AD  IVTDDNPRSE P  IRAE
Sbjct: 355 ALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGAIAMRYADAVIVTDDNPRSERPATIRAE 414

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I+    G  E G+R EAIR+A+  L   DVL++AGKGHET  IV +
Sbjct: 415 ILAAAKGAKEIGDRAEAIRSAVASLQPGDVLLIAGKGHETGQIVGD 460


>gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 296/479 (61%), Gaps = 27/479 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL    FP   N          E +I  ++SDSR +Q GW+F A+ G+  DG  F+
Sbjct: 1   MKLSDL----FPLAENG---------ETEILGMTSDSRKVQPGWLFAALKGSVHDGGKFV 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA+AQGA AI+                + P ++ D  R+ L+L A R YG+ PE ++AV
Sbjct: 48  PQAVAQGAAAILSDGGIGA--------VSVPHVMADEPRRALALAAKRFYGEQPEFVVAV 99

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179
           TGT+GKSS   F +QI  R+G+ +  +G    I    + D   TTP P+ +++ +  L+ 
Sbjct: 100 TGTNGKSSTVDFARQIWSRAGIKAASMGTLGAIGPAGKVDIGHTTPDPVTVSETMKALAR 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QGVTH ++EASSHGL+QHRLDG+ L A +F NL +DH+DYH T +AY +AK+RLF +L P
Sbjct: 160 QGVTHCAMEASSHGLEQHRLDGVDLSAVAFLNLTQDHLDYHATMEAYLDAKVRLFRDLAP 219

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---SVE 296
           +  PAI+ AD  + + V + A  AG +V+S G++G+ + + ++      Q + +    VE
Sbjct: 220 RGIPAIVNADSDHREAVEETARKAGLQVVSFGWRGEDLWIDELMPKATGQTLFLYWKDVE 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K  +   PL GEFQ  NAL AA LC+++G++   V + L  L  V GR EFVG    G 
Sbjct: 280 QKPIEL--PLIGEFQTLNALAAAALCLSLGMEFPAVADGLANLKPVKGRLEFVGKTETGA 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAHT + L+++L+ +R  T+GR+ V+FGCGGDRD  KRPIMG+IA   AD  IVT
Sbjct: 338 AVFVDYAHTPDGLDVLLRAVRPHTAGRLKVIFGCGGDRDAKKRPIMGEIASRQADDVIVT 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DDNPRSEDP KIRA ++ G  G  E G+R EAI   +  L K D LV+AGKGHET  I+
Sbjct: 398 DDNPRSEDPAKIRASVLGGATGAREIGDRAEAIHAVVRELKKGDTLVIAGKGHETGQII 456


>gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Pseudovibrio sp. JE062]
 gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Pseudovibrio sp. JE062]
          Length = 1257

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 286/447 (63%), Gaps = 2/447 (0%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +++DSR ++ G++F A+ G K DG  FI QA+  GA AI++ +     D     +  
Sbjct: 27  ISGLTADSRAVEPGFVFAALKGAKVDGAQFIEQAVDAGAAAILIDADRIDDDIRKKAK-Q 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++  ++ R+ L+L A+   G+ PE ++AVTGT+GK+SVA FV+QI + +GL S  +G 
Sbjct: 86  VPLIAANDARRELALMAAAFAGRQPEKMVAVTGTAGKTSVAVFVRQIFEYAGLVSASLGT 145

Query: 150 TSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T++S  Q    LTTP P+ L + L  L+  G+TH ++EASSHGLDQHRLDG++++A  
Sbjct: 146 IGTVTSTGQSYGGLTTPDPVSLHEDLKRLAEDGITHAAMEASSHGLDQHRLDGVRIVAAG 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNLGRDH+DYH T + Y  AK+RLF +LLP +   +I  +  ++  V++ A   G +  
Sbjct: 206 FTNLGRDHMDYHPTVEDYLQAKLRLFRDLLPDDGVVVIDPEAQFADRVLEVAKERGLKTF 265

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G+ G+ + ++ V      Q + +      F    PL G+FQV NAL+AAGL IA G+ 
Sbjct: 266 TTGFFGEDLKVRSVQPEGFSQVLELETAEGVFSVALPLAGDFQVSNALIAAGLAIAAGVP 325

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               LE L  L   PGR E VGT   G  ++VDYAH   +LE +L  +R    GR+I VF
Sbjct: 326 LQTALEALTVLRGAPGRIEHVGTRENGALVFVDYAHKPEALENVLAALRPFAPGRLISVF 385

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           GCGGDRD GKRP+MG+I+  LAD++IVTDDNPR+E+P+ IR EI+   P  +E G+R  A
Sbjct: 386 GCGGDRDAGKRPLMGEISARLADVSIVTDDNPRTENPDSIREEIVAACPAALEIGDRALA 445

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475
           IR A++ML + DVL VAGKGHET  IV
Sbjct: 446 IRQAVKMLQEGDVLCVAGKGHETGQIV 472



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 154/385 (40%), Gaps = 43/385 (11%)

Query: 30   INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            I  +S DSR IQ G  F AI G   DGH F   A+  GA   VVS     ++    +   
Sbjct: 808  ITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVEAGASVAVVS-----REKLGELPEG 862

Query: 90   TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
               + VD+  K L         +    I+AVTG+ GK+     ++    +SG++      
Sbjct: 863  GRYVAVDDVLKALERLGVAARARSKARIIAVTGSVGKTGTKEALRLCLSKSGITH----- 917

Query: 150  TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---- 205
             + ++SF  +N      P+ LA+ +   +  G+  + +         HR +   L+    
Sbjct: 918  -APVASF--NNHWGV--PLTLAR-MHADTEFGIFEIGM--------NHRGEITPLVKMVR 963

Query: 206  --AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  T +   H++   + +    AK  +F  + P    AI+  D+     +   A  A
Sbjct: 964  PHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPG-GVAILNRDNRQYDLLRYLAAVA 1022

Query: 264  GCR-VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            G + ++S G Q G     KKV    +   +  ++ G++  +    PG   V N+L     
Sbjct: 1023 GVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYKIGAPGAHHVINSLGVLTG 1082

Query: 322  CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM-----ILKN 375
             + +G + A     L ++    GR      +  GG  + VD ++ +N   M     ++  
Sbjct: 1083 VMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESYNANPASMRAAINLVAG 1142

Query: 376  IRTITSGRIIVVFG----CGGDRDQ 396
            +    +GR I V G     G D D+
Sbjct: 1143 LPVEKNGRRIAVLGDMLELGADSDK 1167


>gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
 gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
          Length = 486

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/455 (43%), Positives = 275/455 (60%), Gaps = 14/455 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V++DSR + AGW+F A+ G K DG  F   A+A+GA AI+      L+         
Sbjct: 19  IAGVTADSRKVTAGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEG-GLEGL------G 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++  ++ R+  +L ++  +GK P   +AVTGT+GK+SVA F +QI  + G  +  +G 
Sbjct: 72  VPVVRSEDARRAYALASAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFAQLGHKAASMGT 131

Query: 150 TSTISSFA-QDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              + S A Q ++      LTTP    +A+ ++ L+  GVTH+++EASSHG+DQ R+DG+
Sbjct: 132 LGVVVSEAGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRVDGV 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           KL A +FTN  +DH+DYH + +AY  AK+RLF+ L P  + A++ AD          A  
Sbjct: 192 KLKAAAFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGATAVLNADSEAFPTFASTAVT 251

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +G  V SVG  G+ + L         Q + +  +G+ +D   PL G FQ  N LVAAGLC
Sbjct: 252 SGQSVFSVGEDGQGLRLISRTPTPAGQDLVVEAQGRTYDIRLPLAGAFQASNVLVAAGLC 311

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G D   VL+ LE L    GR + VG    GG  YVDYAHT + L+ +L+ +R  T G
Sbjct: 312 VAAGEDVGKVLKALENLEGAAGRLQRVGRGPHGGEAYVDYAHTPDGLQTVLEALRPHTRG 371

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           ++I VFG GGDRD+GKRP+MG I   LADIAIVTDDNPRSEDP  IRA I+   PG  E 
Sbjct: 372 KLIAVFGAGGDRDRGKRPLMGAIGAKLADIAIVTDDNPRSEDPASIRAAILEAAPGAREI 431

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+R  AIR A+++L + DVLVVAGKGHE   IV  
Sbjct: 432 GDRRAAIRAAVDLLAEGDVLVVAGKGHEQGQIVAG 466


>gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
          Length = 483

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/455 (46%), Positives = 275/455 (60%), Gaps = 18/455 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V++DSR ++AG +F A+ G K DG  F   AI  GA A++      L         
Sbjct: 17  EITGVTADSRKVRAGTLFAALPGTKVDGASFAAAAIQAGAAAVIADRDLGLP-------- 68

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P +V  + R+  +L A+  +G+ P+  +AVTGT+GK+SVA+F +Q+  R+G +S  +G
Sbjct: 69  -VPTIVAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSASMG 127

Query: 149 --------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                   P  T         LTTP    +A+ L+ ++  GV+H ++EASSHG+DQ RLD
Sbjct: 128 TLGVTVSRPDGTHEQLTPPG-LTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRRLD 186

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+KL A  F NL +DH+DYH T +AY  AK+RLFE LLP+   A++ AD          A
Sbjct: 187 GVKLTAAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNADSDAFPAFAAAA 246

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             AG  V+ VG  G  + L K   +   Q + I  EG+  D   PL G FQ  NALVAAG
Sbjct: 247 VIAGQWVMPVGETGATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALVAAG 306

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           LC A G+    V   LE L   PGR + VG  +RGG  YVDYAHT + LE +LK +R   
Sbjct: 307 LCWAAGLTLEEVFAGLEALEGAPGRLQRVGQGARGGEAYVDYAHTPDGLETVLKALRPHV 366

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR+IVVFG GGDRD+GKRP+MGK+A +LAD+AIVTDDNPRSE P  IRAE++ G PG  
Sbjct: 367 RGRLIVVFGAGGDRDRGKRPLMGKVAGELADVAIVTDDNPRSEVPAAIRAEVLAGCPGAA 426

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           E G+R EAIR A+ ML   D+LVVAGKGHE   IV
Sbjct: 427 EIGDRREAIREAVAMLRDGDILVVAGKGHEQGQIV 461


>gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
 gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
          Length = 489

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/449 (44%), Positives = 278/449 (61%), Gaps = 12/449 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++SDSR +  G +FVA+ G K DG  FIP A+A+GA A+++    +  D       +
Sbjct: 32  IAAITSDSRKVGPGTLFVAVPGTKADGARFIPDALAKGAAAVLMEPTGAPPDM------D 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++   + R+ L+L A+RL+ + P+ I+AVTGT+GK+SVA FV+QI    G+ +  +G 
Sbjct: 86  VPLVFSLDVRRSLALAAARLHPRQPQTIVAVTGTAGKTSVAEFVRQIWAHLGIPAAYMGT 145

Query: 150 TSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              I+        LT+P P+ L   L  L+  G+TH+++EASSHGLDQ RL+G++L AG 
Sbjct: 146 LGLIAPGESSYGGLTSPDPVDLHATLDRLAGAGITHMALEASSHGLDQRRLEGVRLAAGG 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNLGRDH+DYH T +AYF+AK+RLF EL+P  +PAI   D  Y    +  A   G    
Sbjct: 206 FTNLGRDHLDYHPTVEAYFHAKLRLFTELMPDGAPAIAALDAPYGATTLAFARTRGLPTF 265

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           ++G  G  + + +V A    Q++  +      + L PL G FQ  NAL+AA L  A G+ 
Sbjct: 266 AIGATGD-LKVTEVVAEGTSQRIRFA---DRPEILLPLVGRFQADNALLAASLVAAGGVP 321

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               L  L  L  VPGR E +G +     ++VDYAH   +LE +L  +R  T+GR+I +F
Sbjct: 322 LDDALSALPHLKGVPGRLERIGHDP-ARPVFVDYAHKPEALETVLDTLRAATAGRLIALF 380

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           GCGGDRD+GKRP+MG IA   AD+ IVTDDNPRSEDP  IRAEI+   PG +E G R EA
Sbjct: 381 GCGGDRDRGKRPLMGAIAAAKADVVIVTDDNPRSEDPSAIRAEILAAAPGALEIGAREEA 440

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           IR  + M+   DVL+VAGKGHET  I+ +
Sbjct: 441 IRAGVAMMGAGDVLLVAGKGHETGQIIGD 469


>gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
 gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
          Length = 487

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/487 (43%), Positives = 291/487 (59%), Gaps = 34/487 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L D++ +D       L + P+      +  V++DSR +  G +F A+ G   DG  FI
Sbjct: 4   LRLSDILRRD-------LDVDPV------VTGVTADSRKVGPGTLFCALPGTARDGREFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA++QGA A++       +D   T+ + + IL   + R+  +L A   YG  P+  +A+
Sbjct: 51  PQALSQGAAAVLAP-----ED---TLATASNILTTYDVRRAYALAAKAFYGAQPKTCVAI 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR------LTTPSPIYLAKAL 174
           TGT+GK+SVA+F +Q+    G  S  +G    ++             LTTP    +A+ L
Sbjct: 103 TGTNGKTSVATFCRQMFAHMGYHSASVGTLGIVTQNGAAEHAITPPGLTTPDAADIAEHL 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L+  GVTH+++EASSHG+DQ RLDG+ L A  FTNL +DH+DYH T +AY  AK+RLF
Sbjct: 163 ASLARDGVTHLALEASSHGIDQRRLDGVTLTAAGFTNLTQDHLDYHATMEAYRAAKLRLF 222

Query: 235 EELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           E+LLP+   A++ AD DAY+      A  AG  +LSVG +G+ + L       + Q + +
Sbjct: 223 EQLLPRGRVAVLNADSDAYNA-FAASAITAGASLLSVGERGQHLTLTHRDLTVDGQILYL 281

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G+ F+    L G FQ  NALVAAGLC+A G  +  VLE L  L    GR E VG+  
Sbjct: 282 EHQGRKFEVKLKLAGLFQASNALVAAGLCLAAGQKAEPVLEALTHLTGARGRLERVGSTG 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  IYVDYAHT + LE +LK +R  T GR++ VFGCGGDRD+GKRP MG IA  LAD  
Sbjct: 342 NGAEIYVDYAHTPDGLETVLKALRPHTQGRLVCVFGCGGDRDRGKRPQMGAIAERLADRV 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           IVTDDNPRSE+P  IRAEI+ G+ G      +E G+R +AI  A+  L   DVLVVAGKG
Sbjct: 402 IVTDDNPRSEEPASIRAEIMAGLAGTQSSNVLEIGDRRQAIFEAVASLKTGDVLVVAGKG 461

Query: 469 HETVHIV 475
           HE   IV
Sbjct: 462 HEQGQIV 468


>gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
 gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
          Length = 487

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/466 (45%), Positives = 283/466 (60%), Gaps = 19/466 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V++DSR +  G +F A+ G   DG  FIPQA+A+GA A++        D +A + S 
Sbjct: 20  VTGVTADSRKVDKGTLFCALPGTAIDGRDFIPQALAKGAAAVLAP------DDTAALESP 73

Query: 90  TPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             +LV V + R+  +L A   YG  P+  +AVTGT+GK+SVA+F +QI    G  S  +G
Sbjct: 74  DSLLVKVSDVRRAYALAAKAFYGSQPKICVAVTGTNGKTSVATFCRQIFSTLGKKSASMG 133

Query: 149 PTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               + S             LTTP    +A+ LS L++ GVTH+++EASSHG+DQ RLDG
Sbjct: 134 TLGVVKSDIDGTETAVTGPGLTTPDAADMARHLSELAADGVTHLALEASSHGIDQRRLDG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRA 260
           + L A  FTNL +DH+DYH T +AY  AK+RLFE LLP+   A++ AD DAY+       
Sbjct: 194 VSLTAAGFTNLTQDHLDYHATMEAYRCAKLRLFESLLPRGRTAVLNADSDAYN-SFAAMC 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +G  V+SVG +G+ + +       + Q + I  +G+ ++   PL G FQ  NALVAAG
Sbjct: 253 VLSGTSVMSVGERGRGLAMVGRDLTVDGQILFIEHQGRKYETKLPLAGLFQASNALVAAG 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           LCIA G D   V+  L  L    GR E VG       +YVDYAHT + LE +LK +R  T
Sbjct: 313 LCIAAGEDPGAVIHALSLLKGARGRLERVGAKRNAAEVYVDYAHTPDGLETVLKALRPHT 372

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-F 439
            G+++VVFGCGGDRD+GKRP MG IA  LAD AIVTDDNPRSEDP  IRAE++ G+    
Sbjct: 373 QGKLVVVFGCGGDRDKGKRPQMGAIAARLADRAIVTDDNPRSEDPATIRAEVLAGMSSET 432

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +E G+R +AI  A+  L   DVLVVAGKGHE   I+  G+K +  D
Sbjct: 433 VEIGDRKKAILEAVSGLKTGDVLVVAGKGHEQGQII--GDKVLPFD 476


>gi|118590897|ref|ZP_01548297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
 gi|118436419|gb|EAV43060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
          Length = 489

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/462 (43%), Positives = 271/462 (58%), Gaps = 10/462 (2%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P     RKI  +++DSR +Q G++F A  G   DG  F P A A         +    +
Sbjct: 12  LPEAAGARKITGLTADSRKVQPGFLFAAFKGVSVDGTKFAPDAAAA-----GAIAILCAE 66

Query: 81  DFSATIRSNTP--ILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           D +A +R+  P  + VV     R+  +  A+R YG  P+ I+AVTGT+GK+SVA F +QI
Sbjct: 67  DAAAEVRALVPETVAVVSAVEPRQVFAKMAARFYGAQPDTIVAVTGTAGKTSVAHFARQI 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            Q +G  +  +G    I    +    LTTP P+ L K L+ L  +GV H ++EASSHGLD
Sbjct: 127 FQAAGHPAASLGTLGLIKPDGESYGGLTTPDPVALHKQLAELEDEGVNHAALEASSHGLD 186

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+RLDG++L A +FTNLGRDH+DYH T + Y NAK+RLF ELLP     ++   + Y+  
Sbjct: 187 QYRLDGVRLTAAAFTNLGRDHMDYHPTIEHYLNAKLRLFAELLPAGGTVVLDPGEKYADR 246

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           VM  A   G  V +VG  G+ + L  +  +   Q++TI     ++    PL G FQV NA
Sbjct: 247 VMAVAQERGLPVFTVGETGRNLTLTGLRPVGAGQELTIQSVRGEYKVTLPLIGRFQVSNA 306

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+AAGL I+ GID+   L  LE L   PGR E  G    GG I+VDYAH  ++L+  L  
Sbjct: 307 LIAAGLAISAGIDTGTALRALENLKGAPGRLELAGRTPAGGLIFVDYAHKPDALDNALVA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++    G++ VV G GGDRD GKR +MG++A   AD+ IVTDDNPRSEDP  IR  ++ G
Sbjct: 367 LKPFARGKLSVVIGAGGDRDPGKRELMGEVAARRADLVIVTDDNPRSEDPAAIRKAVMSG 426

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            PG IE G+R EAI   +  L   D+L VAGKGHET  IV +
Sbjct: 427 APGAIEIGDRYEAIAEGVRRLKDGDILCVAGKGHETGQIVGD 468


>gi|298293105|ref|YP_003695044.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
 gi|296929616|gb|ADH90425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
          Length = 495

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/469 (45%), Positives = 286/469 (60%), Gaps = 13/469 (2%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL+ + + + +      + E + DSR  +AG +F A+ G+K DG  F   A+A+G  A V
Sbjct: 19  ELVGEDADYALADPGLIVGEPALDSRKARAGDVFFALAGSKADGLSFARDAVARGVLA-V 77

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+ A     F  ++      + V N R+ ++L A+R + K PE I AVTGTSGK+SVA+F
Sbjct: 78  VAEAERPPWFDPSVS----YVRVGNARRAVALAAARAFPKQPETIAAVTGTSGKTSVAAF 133

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +QI  R G +S  +G    ++ S A    LTTP PI L + L  L+ +GVTH+ +EASS
Sbjct: 134 ARQIWARLGHASASLGTLGVVTPSGAVYGSLTTPDPIELQRTLHMLAKEGVTHLCLEASS 193

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ+RLDG++L AG FTNL RDH+DYH + +AY +AKMRLF ELLP+   A ++ D  
Sbjct: 194 HGLDQYRLDGVRLSAGGFTNLSRDHLDYHPSMEAYLDAKMRLFRELLPRGGGAAVWVDST 253

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPG 308
               V + A +    VL +G  G  I L    A H++   Q + +  +G+ F    PL G
Sbjct: 254 EGSHVAQVAADHELNVLGIGVAGAGISL---LARHDEGLGQLLEVEADGRRFTLRLPLVG 310

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  NALVAAGL +  G  +   L  LE L  VPGR E VGT    G ++VDYAH  ++
Sbjct: 311 AFQACNALVAAGLVLLTGAGAREALLALETLEGVPGRLELVGTKDGAG-VFVDYAHKPDA 369

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L   L  +R   +GR+IVVFGCGGDRD+GKRPIMG IA + AD+ IVTDDNPRSEDP  I
Sbjct: 370 LANALDALRPYATGRLIVVFGCGGDRDRGKRPIMGAIAAEKADVVIVTDDNPRSEDPAFI 429

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RA I+   P   E G+R EAI  AI M    DV+++AGKGHET  IV +
Sbjct: 430 RAAILEAAPEAQEIGDRAEAIAAAIGMAKSGDVVLIAGKGHETGQIVGD 478


>gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
          Length = 482

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 205/461 (44%), Positives = 279/461 (60%), Gaps = 11/461 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR ++ G++F A+ G K DG  FI QAI +GA A++V          A + +N P+
Sbjct: 22  LTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLVP-------LDAAVAANVPV 74

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +   N R+ L+L A+  +G  P  + AVTGT+GK+S+A+F+++I    G  +  +G    
Sbjct: 75  IADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFLREIWAALGEEAASLGTLGV 134

Query: 153 ISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            S+  + +   TTP P+ L   L+ L+ +GVTH+++EASSHGL Q+RLDG+KL A  FTN
Sbjct: 135 TSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSHGLAQYRLDGVKLRAAGFTN 194

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + RDH+DYH +   Y  AK+RLF E++     A++ AD A   E        G R++SVG
Sbjct: 195 ITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQYAEFEAVCWARGHRIISVG 254

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +GK I L         Q + +  EGK++    PL G FQ  NALVAAGL I  G  +  
Sbjct: 255 RKGKGIFLAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQASNALVAAGLAIGCGGAAEK 314

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           V   LEKL    GR E       G  +Y+DYAHT ++LE  L+ IR  T+GR+ +VFGCG
Sbjct: 315 VFAALEKLTGAKGRMEEAAHLPNGASVYIDYAHTPDALENALEAIRPHTAGRLSIVFGCG 374

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           GDRD GKRP+MG  A  LADI  VTDDNPRSE  + IRA ++ G PG IE G+R  AI T
Sbjct: 375 GDRDAGKRPLMGAAAAKLADIIYVTDDNPRSEAADAIRAAVLKGCPGAIEIGDRAAAIET 434

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIRE 491
           A+  L   DVLVVAGKGHET  IV  G+K +   D + IRE
Sbjct: 435 AMRALQPGDVLVVAGKGHETGQIV--GDKVLPFSDHEAIRE 473


>gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
 gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
          Length = 480

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 211/478 (44%), Positives = 293/478 (61%), Gaps = 19/478 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL       L  + +I P Q  E  +  V+ DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MKLRDL-------LRGEAAIDP-QAAELAVAGVAVDSRAVKPGDVFFALGGHKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA A+V    ++         ++ P++V D+ R+ L+L A+ +Y + P  I AV
Sbjct: 53  EAAVKAGAVAVVTGHPHT---------ASVPVVVADDPRRALALAAAVVYPRQPRTIAAV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +Q+    G ++  +G    +S        LTTP P+ L +A+  L+ 
Sbjct: 104 TGTSGKTSVAAFTRQVWDSLGHNAASLGTIGIVSRHRNVYGSLTTPDPVALHRAIDELAG 163

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASSHGLDQHRLDG+++ A +FTNL RDH+DYH T + Y   K+RLF +L P
Sbjct: 164 DGVTHLALEASSHGLDQHRLDGVRITATAFTNLSRDHMDYHPTVEHYLATKLRLFTDLAP 223

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + +PA+I AD  +S  V+  A      V++VG QG+ I L +       Q++T+   G++
Sbjct: 224 EGAPAVIAADHEHSATVIAAARTHKLNVMTVGRQGEGIRLVEAAIDGFGQRMTVEHRGQN 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL GEFQ+ NALVAAGL I+ G D+A     LE L    GR E VG +  G  ++
Sbjct: 284 WRLRLPLVGEFQIENALVAAGLVISTGGDAAQAFAALEHLEGAKGRLELVG-DRFGAPVF 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L   L+ +R    GR++VVFG GGDRD GKRP+MG+IA   AD  IVTDDN
Sbjct: 343 VDYAHKPDALVKALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGEIAARHADTVIVTDDN 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSEDP  IRA I+   PG    G+R EAIRTA+  L   DVL++AGKGHE   IV +
Sbjct: 403 PRSEDPAAIRAAILEAAPGAQNIGDRAEAIRTAVAALAPGDVLLIAGKGHEIGQIVGD 460


>gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 478

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 267/447 (59%), Gaps = 6/447 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++DSR ++ G++F A+ G K DG  FIP AIA GA A++V    +++     +   
Sbjct: 12  ITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLVPHGSTVE-----VPPQ 66

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++   N R+  +L AS  +G  P  + AVTGT+GK+S A F +QI  R G  S  IG 
Sbjct: 67  VALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAAIGT 126

Query: 150 TSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              I+  +     LTTP P  L   L+ L+  G+TH  +EASSHGLDQHRLDG+KL+A +
Sbjct: 127 LGIIAPGWDNSGGLTTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRLDGVKLMAAA 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH + QAY  AK+RLF E+LP+ + A+I AD   +   ++     G  VL
Sbjct: 187 FTNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGITVL 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G   + + L       + Q++ + + G+      PL G FQ  NAL A GL +A G D
Sbjct: 247 GYGRAARDLRLAAARPTADGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALACGAD 306

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               LE L  L  V GR + V   + G  +YVDYAHT ++LE +LK +R   S R++VVF
Sbjct: 307 PVTALEALGSLEGVHGRLQKVAARAHGAPVYVDYAHTPDALETVLKALRPHASRRLVVVF 366

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           GCGGDRD GKRP+MG I   LAD  IVTDDNPRSEDP  IRA +    P  IE G+R +A
Sbjct: 367 GCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGIEIGDRRDA 426

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475
           IR A+  L K DVLV+AGKGHE   IV
Sbjct: 427 IRAAVSGLQKGDVLVIAGKGHEKGQIV 453


>gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 493

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 263/442 (59%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR +Q G +F A+ G+K  G  FI  A+  GA A++  +  +     A  ++ 
Sbjct: 23  VTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVAVLTDAEGATLAADALAQAE 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++V D  R+ LS  A+  YG  P+ ++AVTGT+GK+SV++FV+QI    GL++  +G 
Sbjct: 83  VALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVRQIWIEMGLAAVNLGT 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    ++      TTP PI L + L++ S+ G+TH ++EASSHGLDQ RLDG+ L A  F
Sbjct: 143 TGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEASSHGLDQRRLDGVTLKAAGF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN  +DH+DYH+T  AYF+AK  LF  +LP++  A+I  DD    +++  A   GC V++
Sbjct: 203 TNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGVDMVAIARARGCEVIT 262

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           VG  G  +HL         Q +  S  GK +     L G FQ  N L+AAGL IA G D 
Sbjct: 263 VGRDGGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADNVLLAAGLVIACGADP 322

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A V + L  L  V GR +   T   GG ++VDYAHT +++   L+ +R    GR++ + G
Sbjct: 323 AHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQAMRPHVMGRLVAIVG 382

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IRA ++ G P   E G+R EAI
Sbjct: 383 AGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVMEGAPEATEVGDRAEAI 442

Query: 450 RTAIEMLNKQDVLVVAGKGHET 471
              I+ +   D L++AGKGHET
Sbjct: 443 LRGIDAIGTGDALLIAGKGHET 464


>gi|220925313|ref|YP_002500615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
 gi|219949920|gb|ACL60312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
          Length = 488

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 210/481 (43%), Positives = 282/481 (58%), Gaps = 17/481 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +   +   FPE     +  P       +  +++DSR ++ G++FVA+ G   DG  F 
Sbjct: 1   MSMATTLGALFPEAAGPEAGIP-------VTGLTADSRRVRPGFVFVAVPGTTMDGRSFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A GA A+V             + +    L V + R+ L+L A+RL+ + PE I+AV
Sbjct: 54  TAAAAAGAVAMVTEGPRP-----EALPAEVAYLAVPDARRALALAAARLFARQPETIVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGKSSVA FV+Q+  R G  S  +G    ++   A    LTTP P+ L + L  L+ 
Sbjct: 109 TGTSGKSSVADFVRQVLARLGRRSASLGTLGVVTGEGAAYGSLTTPDPVTLHETLDRLAG 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+T +++EASSHG++Q RLDG++L A +FTNLG DH+DYH T +AY  AK+RLFE LLP
Sbjct: 169 DGITDLAMEASSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHHTPEAYLTAKLRLFETLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + AI+ AD   +  V       G  +++ G  G+ + L  V      Q +TI  EG+ 
Sbjct: 229 DAATAIVNADGPMADRVAASVRARGLPLVTTGLSGETLRLSAVETRGFAQALTIKAEGRA 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL---VLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    PL G FQV NALVAAGL +A          V+  L  L  VPGR E V T++ G 
Sbjct: 289 YQVDLPLVGGFQVENALVAAGLVLATPAGRGRLPEVVAALGHLAGVPGRLERVATHN-GA 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              VDYAH   +L  +L+ +R  T+GR++ V GCGGDRD+ KRP+MG+IA+  AD  IVT
Sbjct: 348 LCVVDYAHKPEALAGVLQALRPFTTGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVT 407

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRAEI+   PG  E G+R EAIRTA+  L   DVLVVAGKGHET  I+ 
Sbjct: 408 DDNPRSEDPAAIRAEILAAAPGAEEIGDRAEAIRTAVRGLGPGDVLVVAGKGHETGQIIG 467

Query: 477 N 477
           N
Sbjct: 468 N 468


>gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
 gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
          Length = 486

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 201/455 (44%), Positives = 275/455 (60%), Gaps = 14/455 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V++DSR +  GW+F A+ G K DG  F   A+A+GA AI+      L+         
Sbjct: 19  IAGVTADSRKVTTGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEG-GLEGL------G 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++  ++ R+  +L A+  +GK P   +AVTGT+GK+SVA F +QI  + G  +  +G 
Sbjct: 72  VPVVRSEDARRAYALAAAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFTKLGHKAASMGT 131

Query: 150 TSTI-SSFAQDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              + S   Q ++      LTTP    +A+ ++ L+  GVTH+++EASSHG+DQ R+DG+
Sbjct: 132 LGVVVSQPGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRIDGV 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           KL A  FTN  +DH+DYH + +AY  AK+RLF+ L P  + A++ AD     +    A  
Sbjct: 192 KLSAAGFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGAMAVLNADSEAFPDFAAAAVT 251

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +G  V SVG +G+ + L         Q + +  EG       PL G FQ  N LVAAGLC
Sbjct: 252 SGQSVFSVGEEGQGLRLLSRTPTPAGQDLVVEAEGVVHHLKLPLAGAFQASNVLVAAGLC 311

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           IA G DSA VL+ LE L    GR + VG   +GG  YVDYAHT + L+ +L+ +R  T+G
Sbjct: 312 IAAGEDSAKVLKALETLEGAAGRLQRVGRGPKGGEAYVDYAHTPDGLQTVLEALRPHTAG 371

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           ++I VFG GGDRD+GKRP+MG I   LADIAIVTDDNPRSEDP  IRA I+   PG  E 
Sbjct: 372 KLIAVFGAGGDRDRGKRPLMGAIGAKLADIAIVTDDNPRSEDPASIRAAILEAAPGAREI 431

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+R  AIR A+ ++++ DVLVVAGKGHE   IV  
Sbjct: 432 GDRRAAIRAAVALMSEGDVLVVAGKGHEQGQIVAG 466


>gi|188584361|ref|YP_001927806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
 gi|179347859|gb|ACB83271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
          Length = 487

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 214/452 (47%), Positives = 281/452 (62%), Gaps = 10/452 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF   A   GA A+              + 
Sbjct: 20  RPVAGLTADSRRVVPGGVFVAVPGTAADGRLFAAAAARAGAVAVAGEGTRPTD-----LP 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             T  + V   R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI  R G  S  +
Sbjct: 75  EATAWIEVAEARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASL 134

Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +++  A+   LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG+ L A
Sbjct: 135 GTVGIVTNRGAEYGSLTTPDPVTLHQTLARLAGEGITDLAMEASSHGIEQRRLDGVALTA 194

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH T + Y  AK+RLF  LLPK  PAI+ AD AY++ V+  A  AG  
Sbjct: 195 AAFTNLGRDHLDYHPTVEDYLEAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAGHT 254

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI--- 323
           VL+ G  G FI L +   +   Q +T++ +G+++    PL G FQV NALVAAGL +   
Sbjct: 255 VLTTGRSGDFIRLIESGTVGFSQSLTLAHDGREYRVRLPLVGGFQVENALVAAGLALSTQ 314

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A   D A V   LE L  VPGR E +G  + GG   VDYAH   +LE +L  +R   SG+
Sbjct: 315 AGAADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLTALRPFASGQ 373

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           ++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG  E G
Sbjct: 374 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 433

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +R EAIR  +  L   DVLVVAGKGHET  IV
Sbjct: 434 DRAEAIRAGVRGLRAGDVLVVAGKGHETGQIV 465


>gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
 gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
          Length = 483

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 200/454 (44%), Positives = 267/454 (58%), Gaps = 15/454 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S+DSR I+ G+ F AI G+  DG  ++  A A+GA  +V                
Sbjct: 20  EIAGLSADSRAIREGFAFFAIPGHAGDGLSYVDDARARGARVVVAQRQSEC--------- 70

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P++VVD+ R  L+  A+R + + P  I AVTGTSGK+SV + ++QI    G  +  +G
Sbjct: 71  SLPLVVVDDVRAELAHAAARFHPRQPRVIAAVTGTSGKTSVVASLRQIWTAMGHEAASLG 130

Query: 149 PTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               + S  A    LTTP P+ L + L  L+ +GVTH+++EASS G+DQ RLDG++L   
Sbjct: 131 TVGVVDSKGAHYGALTTPGPVELHRILDDLAGRGVTHLAMEASSLGIDQRRLDGVRLSVA 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTN  RDH+D+H+  + YF AKMRLF+ L      A+I AD   +  V       G  V
Sbjct: 191 GFTNFSRDHLDHHRDMEEYFAAKMRLFDTLSQPGRTAVIDADSDVAPRVAAVCEKRGLNV 250

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             VG +G+ I +++  A      + +   G D+    PL G FQ  NALVAAGL IA G 
Sbjct: 251 FGVGAKGEAIAVREARAHALATSLKLRHAGVDYSVELPLAGAFQTSNALVAAGLAIAAGD 310

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D A V   L +L   PGR EF+G    G  ++VDYAH  ++LE +L  +R +T  R+IVV
Sbjct: 311 DPARVFSALNELKGAPGRLEFIGERD-GAPVFVDYAHKPDALEKVLATLRPLTKRRLIVV 369

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKG 443
           FGCGGDRD+GKRP+MG+IA   AD+AIVTDDNPRSED   IRA II G  G     IE  
Sbjct: 370 FGCGGDRDRGKRPLMGEIAARAADVAIVTDDNPRSEDANAIRAAIIEGARGGGAEIIEIA 429

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R EAI  A+  L   DVLVVAGKGHET  IV +
Sbjct: 430 DRGEAISKAVADLRAGDVLVVAGKGHETGQIVGD 463


>gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
 gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
          Length = 493

 Score =  352 bits (904), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 186/442 (42%), Positives = 263/442 (59%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +Q G +F A+ G+K  G  FI  A+  GA A++  +  +     A  +++
Sbjct: 23  IAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVAVLTDAEGAKLAADALAQAD 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++V D  R+ LS  A+  YG  P+ ++AVTGT+GK+SV++FV+QI    GL++  +G 
Sbjct: 83  VALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVRQIWIEMGLAAVNLGT 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    ++      TTP PI L + L+  S+ G+TH ++EASSHGLDQ RLDG+ L A  F
Sbjct: 143 TGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEASSHGLDQRRLDGVTLKAAGF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN  +DH+DYH+T  AYF+AK  LF  +LP++  A+I  DD    +++  A   GC V++
Sbjct: 203 TNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGVDMVAIARARGCEVIT 262

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           VG  G  +HL         Q +  S  GK +     L G FQ  N L+AAGL IA G D 
Sbjct: 263 VGRDGGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADNVLLAAGLVIACGADP 322

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A V + L  L  V GR +   T   GG ++VDYAHT +++   L+ +R    GR++ + G
Sbjct: 323 AHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQAMRPHVMGRLVAIVG 382

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IRA ++ G P   E G+R EAI
Sbjct: 383 AGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVMEGAPEATEVGDRAEAI 442

Query: 450 RTAIEMLNKQDVLVVAGKGHET 471
              I+ +   D L++AGKGHET
Sbjct: 443 LRGIDAIGTGDALLIAGKGHET 464


>gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
 gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
          Length = 486

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 197/472 (41%), Positives = 283/472 (59%), Gaps = 14/472 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V++DSR    G +F A+ G K+DG  FIPQAI+QGA A++V    +  D      S 
Sbjct: 22  ILAVTADSRRAGPGTLFFALRGAKQDGSAFIPQAISQGAAAVIVDQETARPD------SA 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++V  + +  L+  AS L G  P  I A+TGT+GKSS A F++Q+    G  +  +G 
Sbjct: 76  VPVIVRPDAKHLLACMASALAGPQPSCIAAITGTNGKSSTADFLRQLWILQGNRAASLGT 135

Query: 150 TSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              IS         LTTP P+ L++ L+ L+  GV HV++EASSHGL+QHRLDG+ L A 
Sbjct: 136 LGLISDTDVPAPPSLTTPDPVSLSQTLAALARNGVEHVALEASSHGLEQHRLDGVTLTAA 195

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKR-AHNAGC 265
            F+NL RDH+DYH T +AY  AK+RLF+E+LP    A + AD D+ +   ++  A     
Sbjct: 196 GFSNLTRDHLDYHLTLEAYRAAKLRLFDEVLPTGGIAAVNADMDSETFSALQDIAARRSL 255

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA 324
           ++ SVG  G  + L +     + Q + +++ G++  +    LPG FQ  N ++AA +C  
Sbjct: 256 KLRSVGRNGTTLRLIEARPTPSGQILRLALHGEELPEISLSLPGRFQADNVMLAAAMCWQ 315

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
              D+  V+  L +L  V GR E       G   YVDYAHT ++L+ +L ++R  T+GR+
Sbjct: 316 DDADTRQVVALLPRLTGVHGRCERAVALPNGAAAYVDYAHTPDALDCVLSSLRPHTTGRL 375

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           +VVFG GGDRD+GKRP+MG +A  +AD+AIVTDDNPR+E+P  IR+EI+   P  +E  +
Sbjct: 376 VVVFGAGGDRDRGKRPLMGAVAARMADLAIVTDDNPRTEEPSSIRSEILAACPDALEIAD 435

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD-IIREILGL 495
           R  AI   +E L   D+LVVAGKGHE   IV  G + +  D   +IRE+ G+
Sbjct: 436 RRSAIAAGLEALQPGDILVVAGKGHEQGQIV--GTEILPFDDRLVIRELAGV 485


>gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetospirillum magneticum AMB-1]
 gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 478

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 205/453 (45%), Positives = 271/453 (59%), Gaps = 10/453 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  I  +++DSR ++ G++F A+ G K DG  FIP A+A GA A++     S  D    
Sbjct: 8   RDVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAALAAGAVAVLAPEG-SRPDLPPE 66

Query: 86  IRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +     +LV D N R+  +L AS  +G  P  + AVTGT+GK+S A F +QI  R G ++
Sbjct: 67  V-----VLVTDANPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLGHAA 121

Query: 145 FQIGPTSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             IG T  I++   DN+  LTTP P  L   L+ L+  GVTH  +EASSHGLDQHRLDG+
Sbjct: 122 AAIG-TLGITAPGWDNQGGLTTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRLDGV 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +L+A +FTNL RDH+DYH    AY  AK+RLF E+LP+ + A+I AD   +   ++    
Sbjct: 181 RLMAAAFTNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAK 240

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G  VL  G   + + L +       Q++ + + G+      PL G FQ  NAL A GL 
Sbjct: 241 RGITVLGFGRTARDLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLA 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G D    LE L  L  VPGR + V + + G  IYVDYAHT ++LE +LK +R   + 
Sbjct: 301 LACGADPVAALEALGHLDGVPGRLQQVASRANGAPIYVDYAHTPDALETVLKALRPHAAR 360

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           R++ VFGCGGDRD GKRP+MG I   LAD  IVTDDNPRSEDP  IRA +    P  IE 
Sbjct: 361 RLVAVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGIEI 420

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +R  AIR A+  L K DVLV+AGKGHE   IV
Sbjct: 421 ADRRGAIRAAVSGLQKGDVLVIAGKGHEQGQIV 453


>gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelagibaca bermudensis HTCC2601]
 gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. HTCC2601]
          Length = 494

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/464 (40%), Positives = 270/464 (58%), Gaps = 1/464 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +     R+ ++  +S DSR +  G +F A+ G K  G  FI  A+AQGA A++  
Sbjct: 8   LSDLGLTARGGRDARVTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGAVAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +    +A   S+  +++    R  L+   +  +G  P  ++AVTGT+GK+SVASFV+
Sbjct: 68  AEGARLAEAALAESDVALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTSVASFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           ++ Q  G  +  +G T     +    R TTP PI L KAL+  +S GV H ++EASSHGL
Sbjct: 128 RLWQELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L+A  FTN  +DH+DYH   + YF AK  LF  +LP+E  A++  DDA   
Sbjct: 188 DQRRLDGVQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARGI 247

Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +++  A   G  VL+VG  +G  + L         Q++ +S  G        L G FQ  
Sbjct: 248 DMLAIARARGQEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQGQ 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NALVAAGL IA G ++  V   L +L  V GR +   T   G  +YVDYAHT +++   +
Sbjct: 308 NALVAAGLVIACGAEAEDVFRALPRLETVHGRMQLAATRDSGAAVYVDYAHTPDAVATAI 367

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR+I + G GGDRD GKRP+MG+ A + AD+ IVTDDNPRSEDP  IRA+++
Sbjct: 368 KALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAAENADLVIVTDDNPRSEDPAAIRAQVL 427

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G P   E G+R EAI   +++L   D L+V GKGHET  IV +
Sbjct: 428 EGAPEATEVGDRAEAILRGVDLLQPGDALLVCGKGHETGQIVGD 471


>gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
          Length = 501

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/450 (44%), Positives = 272/450 (60%), Gaps = 16/450 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I  G +FVAI G   DG  FI  A+A+GA A+++  A         +  +  +
Sbjct: 36  LSADSRRINPGDLFVAIPGTHADGSRFIADAVARGASAVLMEPAAP----RPVLPPHVAL 91

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
               + R  LSL A+R Y + P  I AVTGT+GK+SVA F++QI +R G  +  +G   T
Sbjct: 92  AFSLDVRHSLSLAAARFYPRQPATIAAVTGTAGKTSVAFFLRQIWERLGHKAAYLG---T 148

Query: 153 ISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           I   A D      LTTP P+ L   L  L+ +GVTH+++EASSHGLDQ RLDG+   AG 
Sbjct: 149 IGLVAPDGSTYGSLTTPDPVELHATLDRLAGEGVTHMALEASSHGLDQKRLDGVHFTAGG 208

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNLGRDH+DYH T  AYF AK+RLF +++P ++ A+      ++   +  A   G ++L
Sbjct: 209 FTNLGRDHLDYHPTIDAYFRAKLRLFTQVMPDDATAVAVTGAPFAANALAWAETRGLKLL 268

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +G  Q   + +         Q+V  + +G     + PL G FQ+ NAL+AAGL IA G 
Sbjct: 269 PIGEGQATGLDIFGTTGSGTGQKVMFA-DGSHA--IVPLVGRFQLDNALLAAGLAIACGA 325

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +    LE L  L  VPGR E +G + R   ++VDYAH   +L  +L  +R    GR++VV
Sbjct: 326 ERPAALEALAYLTGVPGRLERIGDDPRR-PVFVDYAHKPEALATVLDTLRAAVPGRLMVV 384

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGGDRD+GKRP+MG IA   AD+ IVTDDNPRSEDP  IRAEI+ G  G  E G+R E
Sbjct: 385 FGCGGDRDKGKRPLMGAIAASKADVVIVTDDNPRSEDPAAIRAEILEGAHGAREIGDRAE 444

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           AI+ A+ +L   D L+VAGKGHET  I+ +
Sbjct: 445 AIKAAVALLQPGDALIVAGKGHETGQIIGD 474


>gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
 gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
          Length = 483

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 191/448 (42%), Positives = 265/448 (59%), Gaps = 13/448 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR +  G++F A++G   DG  FI  AI  GA A++       +D    I    P 
Sbjct: 18  LTCDSRKVAPGFVFAALLGTVSDGRDFIQAAIDNGAIAVLTDE----RDGEWEI----PA 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V   R   +  A+  Y K PE ++AVTGT+GKSS   F++QI    G  S  +G    
Sbjct: 70  IKVAEPRLAFAKAAAAFYHKQPEVMVAVTGTNGKSSTVDFLRQIWTELGHVSASVGTLGA 129

Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           +  S A +   TTP P+ +   L+ L+++GVTH ++EASSHGL Q+R+ G++L AG F N
Sbjct: 130 VGPSGAVELGHTTPDPVAVQSTLAILANEGVTHCAMEASSHGLAQYRMHGVQLAAGGFLN 189

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH+  + YF AKM+LF ELLP+ +PAII AD     + +  A  A  +  +VG
Sbjct: 190 LSQDHLDYHKDFEDYFAAKMKLFSELLPEGAPAIINADSDMKDKALAIATAANLKPFTVG 249

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++G  + + ++   +  Q++ +  E  + D       PL GEFQ  NAL AAG+ +++G 
Sbjct: 250 WRGDHLWIDEISPRNTGQKLQLQWETPEGDKETIVNLPLIGEFQALNALAAAGIALSLGA 309

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D   V   +EKL  V GR E V     G  I+VD+AHT + L+ +L+  R   +GR+I V
Sbjct: 310 DPMAVFAAMEKLKGVKGRLELVAETQNGAGIFVDFAHTPDGLDTLLRAARPHAAGRVICV 369

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGGDRD GKRPIMG+IA   AD  IVTDDNPRSEDP  IRA I+ G P   E   R  
Sbjct: 370 FGCGGDRDAGKRPIMGEIAAKYADEVIVTDDNPRSEDPASIRAAIMAGAPNATEIDGREA 429

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           AI+  I  L K DVL++AGKGHET  I+
Sbjct: 430 AIKEGISRLKKGDVLMIAGKGHETGQII 457


>gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 493

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 181/448 (40%), Positives = 263/448 (58%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G +F A+ G++  G  FI  A+  GA A++  +  +     A   SN
Sbjct: 23  ITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAAVLTDAEGAKIAAEALAGSN 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++V D+ R+ L+  A+  +G  P  ++AVTGT+GK+SV++FV+QI    GL +  +G 
Sbjct: 83  AALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVSTFVRQIWVEMGLPAVNLGT 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    ++A     TTP PI L + L+  +  G+TH ++EASSHGLDQ RLDG+ L A  F
Sbjct: 143 TGVEGAWAAPLAHTTPEPITLHRTLAEAARNGITHAAMEASSHGLDQRRLDGVTLKAAGF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN  +DH+DYH+T +AYF AK  LF  +LP++  A++  DD    ++   A   GC V++
Sbjct: 203 TNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVNIDDEKGIDIAAIARARGCEVIT 262

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           VG  G  +HL+        Q +  +  GK +     L G FQ  N L+AAGL IA G D+
Sbjct: 263 VGRDGGDLHLQGQRFDATGQDLRFTWRGKTYQKRLNLIGGFQGDNVLLAAGLVIACGADA 322

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V + L  L  V GR +   T   G  ++VDYAHT +++   L  +R    GR++ + G
Sbjct: 323 QEVFDTLPHLTTVRGRMQLAATRDNGAAVFVDYAHTPDAVATALSAMRPHVMGRLVAIVG 382

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            GGDRD+ KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA ++ G P   E G+R EAI
Sbjct: 383 AGGDRDRVKRPLMGQAAAENADMVIVTDDNPRSEDPASIRAAVLSGAPDAWEVGDRAEAI 442

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTN 477
              ++ L   D L++AGKGHET   V +
Sbjct: 443 LRGVDALEPGDALLIAGKGHETGQTVGD 470


>gi|170748780|ref|YP_001755040.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655302|gb|ACB24357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 485

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 209/480 (43%), Positives = 284/480 (59%), Gaps = 21/480 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL    FPE     +       +  ++++++DSR +  G +FVA+ G K DG  F  
Sbjct: 4   RLADL----FPEAAGPAA-------DLTVSDLTADSRQVATGTVFVAVPGTKADGRRFAA 52

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA  +GA A+            A +      + V + R+ L+L A+RL G  PE ++AVT
Sbjct: 53  QAAQRGAAAVAGEGTRP-----ADLPDAVAWIPVADARRALALAAARLAGPQPETVVAVT 107

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQ 180
           GT+GKSSVA FV+QI  R G  +  +G    ++   AQ   LTTP P+ L + L+ L+++
Sbjct: 108 GTAGKSSVADFVRQILARLGRDAASLGTVGIVTGRGAQYGSLTTPDPVTLHRTLARLAAE 167

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           GVT +++EASSHG++Q RLDG++L A  FTNLGRDH+DYH + + Y  AK+RLF +LLP 
Sbjct: 168 GVTDLAMEASSHGIEQRRLDGVRLDAAGFTNLGRDHLDYHASIEEYLAAKLRLFTDLLPP 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             PAI+ AD AY++ V+  A  AG  V +VG  G+ + ++ V      Q   +   G+  
Sbjct: 228 GRPAIVNADGAYAERVIAAAEAAGRPVRTVGRGGRDLRVEAVRTEGFAQAARVLFAGRAR 287

Query: 301 DFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           D   PL GEFQV N   A   A    A   D   V   L+ L  VPGR E +G  +RGG 
Sbjct: 288 DLRLPLVGEFQVENALVAAGLALATPAGAADPDGVFAALDHLTGVPGRMERIG-EARGGL 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   +LE +L  +R   +GR++ VFGCGGDRD+GKRP+MG IA  LAD+ IVTD
Sbjct: 347 CLVDYAHKPEALESVLTALRPFATGRLVAVFGCGGDRDRGKRPLMGAIAQRLADVVIVTD 406

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPR+ED   IR  I+   PG  E G+R EAI +A+  L   DVLVVAGKGHET  IV +
Sbjct: 407 DNPRTEDAAAIRRAILDAAPGAEEIGDRSEAIHSAVSRLGPGDVLVVAGKGHETGQIVGD 466


>gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
 gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
          Length = 493

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 189/465 (40%), Positives = 271/465 (58%), Gaps = 3/465 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L +     RE +I+ +S DSR +  G +F A+ G K  G  F+  A++QGA A V++
Sbjct: 7   LSELGLTARGGREARISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAALSQGAAA-VLT 65

Query: 75  SAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            A   Q  + T+  S   +++  + R+ L+   +  +G  P  ++AVTGT+GK+SVA+FV
Sbjct: 66  DAEGAQIAAETLAGSEVALVIAADPRQALAFACALFFGAQPATMIAVTGTNGKTSVATFV 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +++ Q  G  +  +G T     +    R TTP PI L KAL+  +  GV H ++EASSHG
Sbjct: 126 RRLWQEMGFRAVNLGTTGIEGDWQAPLRHTTPDPITLHKALAEAALAGVEHAAMEASSHG 185

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           LDQ RLDG++L A  FTN  +DH+DYH   + YF AK  LF  +LP+E  A++  DDA  
Sbjct: 186 LDQRRLDGVQLRAAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARG 245

Query: 254 KEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +++  A   G   L+VG  QG  + L         Q++ +S  G        L G FQ 
Sbjct: 246 IDMLAIAKARGQETLTVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQG 305

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL+AAGL IA G ++  V   L KL  V GR +   T   G  +YVD+AHT +++   
Sbjct: 306 QNALLAAGLVIACGAEAEDVFRALPKLDTVRGRMQLAATRDSGAAVYVDFAHTPDAVSTA 365

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +K +R    GR++ + G GGDRD GKRP+MG  A + AD+ IVTDDNPRSEDP  IR ++
Sbjct: 366 IKALRPHVMGRLVAIIGAGGDRDAGKRPLMGAAAAEHADVVIVTDDNPRSEDPAAIRLQV 425

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + G P  IE G+R EAI   ++ML   D L+V GKGHET  IV +
Sbjct: 426 LGGAPEAIEVGDRAEAILRGVDMLQPGDALLVCGKGHETGQIVGD 470


>gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
 gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
          Length = 493

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 181/442 (40%), Positives = 254/442 (57%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G++F A+ G+   G  FI  A+  GA A++  +  +         + 
Sbjct: 23  ITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAAVLTDATGAAMAADLMASAG 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++V D  R+ L+  A+  +G  P  ++AVTGT+GK+SV++FV+QI    GLS+  +G 
Sbjct: 83  VAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKTSVSTFVRQIWIEMGLSAVNLGT 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    ++      TTP PI L +AL+  ++ G+TH ++EASSHGLDQ RLDG+ L A  F
Sbjct: 143 TGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAMEASSHGLDQRRLDGVTLKAAGF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN  +DH+DYH T  AYF+AK  LF  +LP++  A+I  DD    ++   A   GC VLS
Sbjct: 203 TNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGIDMAAIARARGCEVLS 262

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           VG  G  +HL         Q +     GK +     L G FQ  N L+A GL IA G   
Sbjct: 263 VGRDGGDLHLTGQRFDATGQDLRFDWRGKTYQKRLNLIGGFQADNVLLACGLVIACGAKP 322

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A V + +  L  V GR +   T   GG ++VDYAHT +++   LK +R    GR++ + G
Sbjct: 323 ADVFDTIPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAISTALKAMRPHVMGRLVAIVG 382

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            GGDRD  KRP+MG+ A   AD+  VTDDNPRSEDP  IRA +I G P   E G+R EAI
Sbjct: 383 AGGDRDTTKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVIAGAPDATEVGDRAEAI 442

Query: 450 RTAIEMLNKQDVLVVAGKGHET 471
              I+ +   D L++AGKGHET
Sbjct: 443 LRGIDAIGPGDALLIAGKGHET 464


>gi|192292419|ref|YP_001993024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286168|gb|ACF02549.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris TIE-1]
          Length = 485

 Score =  343 bits (881), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 202/449 (44%), Positives = 267/449 (59%), Gaps = 18/449 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F A+ G K DG  F+       A A+   +     +         P + +
Sbjct: 28  DSRAVKPGDLFFALAGAKTDGARFV-------AAAVATGAVAVAGEHRPEGDLAVPFVQL 80

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP----TS 151
            N R  L+  A+R Y + PE I AVTGTSGK+SVA+F +QI QR G +S  IG     T 
Sbjct: 81  SNARLALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTP 140

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T S +     LTTP PI L ++L  ++ +G+TH+++EASSHGLDQ RLDG+++ AG FTN
Sbjct: 141 TRSVYGS---LTTPDPIALHRSLDEIAREGITHLALEASSHGLDQFRLDGVRVAAGGFTN 197

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH T   Y NAK+RLF  L+     A+I AD   S +V++ A   G R++++G
Sbjct: 198 LSRDHMDYHPTVAHYLNAKLRLFRNLVQDGGAAVISADHDCSAQVIEAAGARGLRLITIG 257

Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G     I L         QQ+T+   GK      PL GEFQ+ NALVAAGL I  G D
Sbjct: 258 RNGDPGAGIKLIDATVEGFAQQLTVEHAGKRHRIKLPLVGEFQIENALVAAGLVIGTGGD 317

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +A     LE L   PGR + VG  + G  ++VDYAH  ++L   L+ +R     +++VVF
Sbjct: 318 AAASFAALEHLEGAPGRLDLVGARN-GAPVFVDYAHKPDALAKTLQALRPYAKRKLVVVF 376

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           G GGDRD GKRP+MG IA + AD+ I+TDDNPRSEDP  IR+ I+   PG  E G+R EA
Sbjct: 377 GAGGDRDSGKRPLMGAIAAENADVVIITDDNPRSEDPATIRSAILAAAPGAREIGDRAEA 436

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           IRTAI  L   D LV+AGKGHET  IV +
Sbjct: 437 IRTAIGELQPGDALVIAGKGHETGQIVGD 465


>gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
          Length = 493

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/461 (39%), Positives = 266/461 (57%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           QL +     R+  +  ++ DSR ++ G++F A+ G++  G  FI  A+  GA AI+  +A
Sbjct: 10  QLGLTARNGRQATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAILTDAA 69

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            +    +    S   +++ D+ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+FV+QI
Sbjct: 70  GAQLAATELGASEAALVISDDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATFVRQI 129

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  +  +G T    +++     TTP PI L +AL+  + QGVTH ++EASSHGLDQ
Sbjct: 130 WTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAARQGVTHAAMEASSHGLDQ 189

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RLDG+ L A  FTN  +DH+DYH T + YF AK  LF  +LP+++ A+I  D     ++
Sbjct: 190 RRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADRGVDM 249

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A    C V++VG     +HL  +      Q V     G  +     L G FQ  N +
Sbjct: 250 AAIAEARNCPVITVGRDSGDLHLGNIQVDSTGQVVCFMHHGTQYVRRLGLIGSFQAENVM 309

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +AA L IA G D   V + LE L  V GR +  GT   G  ++VDYAHT +++   LK +
Sbjct: 310 LAAALVIACGEDPQHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIATALKAL 369

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    GR+I + G GGDRD  KRP+MG+ A + AD+  VTDDNPRSEDP  IRA ++ G 
Sbjct: 370 RPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPASIRAAVLLGA 429

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           P  IE G+R EAI   ++ L   D L++AGKGHET  +V +
Sbjct: 430 PDAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD 470


>gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
 gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
          Length = 480

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 193/461 (41%), Positives = 266/461 (57%), Gaps = 12/461 (2%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F A  G + +G  FIP A+  GA A+V      ++            +  
Sbjct: 30  DNRKVAPGTVFGAFQGARVNGEDFIPAAVQAGATAVVARPEARVE--------GAIHIAS 81

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           DN R+  +  A+R +   PE  +AVTGT+GK+S     +Q+ +  G  S  IG     +S
Sbjct: 82  DNPRRLFAQLAARYFAPFPEVTVAVTGTNGKTSTVELTRQLWRMLGHHSASIGTLGVTTS 141

Query: 156 FAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             Q    LTTP  +     +S L  +G+TH + EASSHGL Q+R +G+ + A +FTNL R
Sbjct: 142 VDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEASSHGLAQYRTEGLPVSAAAFTNLSR 201

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+DYH    +YF AKMRLF+E++  +  A+++ADD +S +V++RA   G RVLSVG QG
Sbjct: 202 DHLDYHGDMDSYFEAKMRLFDEVVAPQGAAVVWADDEWSDKVIQRATKRGLRVLSVGVQG 261

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           + + L         Q + I VEGK++    PL G +Q  NAL AAGL IA G D+  VLE
Sbjct: 262 QALRLANRTPTQLGQTLDIEVEGKNYKVNLPLIGAYQAANALTAAGLAIAGGEDAGKVLE 321

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L ++  V GR E       G  +YVDYAHT + L   ++ +R  T GR+I +FG GGDR
Sbjct: 322 LLGRVQPVRGRLERAVITKAGAPVYVDYAHTPDGLRAAIEALRPHTRGRLIALFGAGGDR 381

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           D GKRP MGK+A DLAD  IVTDDNPRSE+P  IRA ++ G PG  E G R  AI  AI 
Sbjct: 382 DAGKRPQMGKVAADLADHVIVTDDNPRSEEPSAIRAAVMAGAPGAEEIGGRRAAIAAAIA 441

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494
                D++++AGKGHE   I+  G++ +   D  + RE  G
Sbjct: 442 QAGADDIVLLAGKGHEQGQII--GDRVLPFDDVTVARECAG 480


>gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 485

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 190/450 (42%), Positives = 272/450 (60%), Gaps = 10/450 (2%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ DSR ++ G +F A+ G K DG  FIP AI +GA  I+             + +
Sbjct: 23  EVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGAVCILAPKG---------VTA 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++  ++  + LS  A+  Y + P  I A+TGT+GKSS   F++QI  ++G+ +  +G
Sbjct: 74  PVPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSSTVEFLRQIWAKAGIEAAALG 133

Query: 149 PTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T +S   D   TTP  I L K+L  L+ +GVTH+++EASSHGL Q R+DG++L   
Sbjct: 134 TLGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAMEASSHGLKQRRMDGVRLSLV 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL +DH+DYH   + YF++KMRLF  L P  +PA+I  D  +S+ V + A +AG   
Sbjct: 194 GFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVINMDSDWSQRVAQAAQSAGLSP 253

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + +G++G+ + + ++      Q V  S +G++ +   PL GEFQ  NAL AA + IA G+
Sbjct: 254 VEIGWRGRDLTVHEITPHPASQMVRFSWKGEEREVDLPLIGEFQAANALGAAAMAIASGV 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                 E + +L  V GR + VGT   G  + +DYAHT + L+ +L+  R  T GRII+V
Sbjct: 314 SPDAAFEAMGQLTGVAGRLQTVGTTKDGAPVLLDYAHTPDGLDKLLRAARPHTQGRIILV 373

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FG GGDRD  KR  MG+IA  L+D+AIVTDDNPRSEDP  IR  I+   PG  E G+R  
Sbjct: 374 FGAGGDRDPTKRAPMGEIAARLSDVAIVTDDNPRSEDPAGIRKTILAACPGAQEIGDREA 433

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           AIR  IEML   DVL+VAGKGHET  I+ +
Sbjct: 434 AIRAGIEMLKAGDVLLVAGKGHETGQILAD 463


>gi|167647634|ref|YP_001685297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter sp. K31]
 gi|167350064|gb|ABZ72799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter sp. K31]
          Length = 485

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 203/455 (44%), Positives = 278/455 (61%), Gaps = 15/455 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V++DSR ++ G++F A+ G+K DG  FI  AIA GA AI+      ++  S      
Sbjct: 19  ITGVTADSRKVREGFLFAALPGSKADGRSFIDGAIASGAAAILAPD--DVEGLS------ 70

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++   + R+  +L A++ + + P   +AVTGT+GK+SVA F +QI  R G  +  +G 
Sbjct: 71  VPVVHAGDLRRAYALAAAQFWAEQPATCIAVTGTNGKTSVAGFARQIYARLGHKAASMGT 130

Query: 150 TSTISSFA--QDNRLT-----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              + S     D +LT     TP    +A+ ++ L+  GVTH++VEASSHG+DQ RLDG+
Sbjct: 131 LGVVVSGPGIPDQQLTPPGLTTPDAADVAEMMARLAGMGVTHLAVEASSHGIDQRRLDGV 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +L A  FTN  +DH+DYH T   Y  AK+RLFE LLP+   A++ AD          A  
Sbjct: 191 RLAAAGFTNFTQDHLDYHGTMGCYRAAKLRLFETLLPRGKTAVLNADSDAFPAFASAAVT 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +G  +LSVG++G+ + L     +   Q++ I+ + + FD L PL G+FQ  N LVAAGL 
Sbjct: 251 SGQTILSVGHEGQGLKLVSHTPVPQGQRLKIAAQDRVFDVLLPLAGDFQASNVLVAAGLV 310

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G D    +  LE L    GR + VGT +RGG  YVDYAHT + LE +L  +R  T G
Sbjct: 311 LATGEDLDATIAALEHLEGAAGRLQRVGTGARGGEAYVDYAHTPDGLETVLAALRPHTRG 370

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           ++IVVFG GGDRD+GKRP+MG+IA  LAD+AIVTDDNPRSE+P  IRA I+   PG  E 
Sbjct: 371 KLIVVFGAGGDRDRGKRPLMGEIAARLADVAIVTDDNPRSEEPASIRAAILAAAPGAQEY 430

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+R EAIR    +L   DVLVVAGKGHE   +V  
Sbjct: 431 GDRREAIRAGAALLADGDVLVVAGKGHEQGQLVAG 465


>gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
 gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
          Length = 483

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/452 (40%), Positives = 268/452 (59%), Gaps = 10/452 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+ +  ++ DSR ++ G++F A+ G K  G  FIP+A+  GA  I+             +
Sbjct: 18  EQTVRGLTLDSRKVEPGFVFAALPGVKVHGRDFIPKALTAGASVILTDE---------PV 68

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  P++ V      L+  A+R Y + P +I+A+TGT+GKSS   F++QI   +G+ +  
Sbjct: 69  EAPVPVIAVPEPAALLARMAARFYPRQPGHIVAITGTNGKSSTVEFLRQIWAGAGIEAAC 128

Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G    T  +  +    TTP  + L  AL  L+ +GVTH+ +EASSHGL QHR+DG++L 
Sbjct: 129 LGTLGVTRGNSVEVTGYTTPDAVALQAALDRLAGEGVTHLGMEASSHGLKQHRMDGVRLQ 188

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G+FTNL +DH+DYH     YF +K++LF E LP +  A+I  D  +  ++   A   G 
Sbjct: 189 VGAFTNLTQDHLDYHPDFADYFASKLKLFTERLPADGRAVINVDSEWGGKMAASARERGL 248

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            VL++G++G  + ++++      Q V  + +G++     PL GEFQ+ NAL AA + ++ 
Sbjct: 249 EVLTMGWRGSDLAIREITPRAASQSVIFAWKGREHALDIPLVGEFQILNALGAAAIALSD 308

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+  A VL+ L+ L  VPGR E VG  + G  + VDYAHT + L+ +L+  R  T GR+I
Sbjct: 309 GVAEASVLDTLKGLAGVPGRLEKVGETAAGAPVLVDYAHTPDGLDKLLRAARPHTRGRVI 368

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V+FGCGGDRD  KR  MG IA + AD  IVTDDNPRSEDP  IR  ++ G P   E  +R
Sbjct: 369 VIFGCGGDRDASKRAKMGVIAANQADHVIVTDDNPRSEDPAAIRKAVLKGCPRAEEIADR 428

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +AIR  + ML   D L++AGKGHET   V +
Sbjct: 429 AQAIRHGVAMLKAGDCLLIAGKGHETGQTVGD 460


>gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 511

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 208/475 (43%), Positives = 279/475 (58%), Gaps = 12/475 (2%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D I     EL +       +  E ++  V+SDSR + +G +F A+ G   DG  +I QAI
Sbjct: 23  DWINMKLRELFSDDVAIAAEASEIEVRGVASDSRAVLSGEVFFALAGANTDGARYIDQAI 82

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA A+V           A +R       V N R+ L+L A+R++ + P  I AVTGTS
Sbjct: 83  ANGAVAVVGEQFPDSDHRVALVR-------VANPRRALALAAARMFPRQPATIAAVTGTS 135

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+SVA+F +QI QR G ++  IG    ++   +    LTTP PI L + +  ++ +GVT
Sbjct: 136 GKTSVAAFTRQIWQRLGFAAASIGTIGLVTPQRSVYGSLTTPDPIALHREIDQIAGEGVT 195

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+++EASSHGLDQ RLDG+++ A  FTNL RDH+DYH     Y  AK+RLF +L+     
Sbjct: 196 HLALEASSHGLDQFRLDGVRVSAAGFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVIDGGA 255

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDF 300
           A+I AD  +S+ V+  A   G R+++VG  G     I L         Q++T+   G++ 
Sbjct: 256 AVISADHEHSEAVIAAARARGLRLITVGRNGNRQDGIRLIGATIDGFAQRLTVEFRGRER 315

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL GEFQ+ NALVAAGL I  G D+  V   L+ L    GR E VG +  G  I+V
Sbjct: 316 GLRLPLVGEFQIENALVAAGLAIGTGGDAEQVFAALQHLEGAKGRLELVG-DRNGAPIFV 374

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH  ++L   L+ +R     ++IVVFG GGDRD GKRP+MG IA  LAD  IVTDDNP
Sbjct: 375 DYAHKPDALAKALQALRPYAKRKLIVVFGAGGDRDAGKRPLMGAIATGLADSVIVTDDNP 434

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  IRA I+    G +E G+R EAIRTAI  L   D L++AGKGHET  I+
Sbjct: 435 RSEDPAAIRAAIMAAAGGAVEIGDRAEAIRTAIGALQSGDALLIAGKGHETGQII 489


>gi|163732138|ref|ZP_02139584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
 gi|161394436|gb|EDQ18759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
          Length = 493

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 183/466 (39%), Positives = 271/466 (58%), Gaps = 6/466 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI--- 71
           ++QL +     R+  +  ++ DSR ++ G++F A+ G++  G  FI  A+  GA AI   
Sbjct: 8   LSQLGLTARDGRQAALTGLAVDSRDVKDGYLFAALPGSRIHGAEFIQYALRMGASAILTD 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V +  +  +  A   S+  +++ D+ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+
Sbjct: 68  IVGARLAATELGA---SDAALVISDDPREALARTAALWFGAQPKTMIAVTGTNGKTSVAT 124

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           FV+QI    G  +  +G T    +++     TTP PI L +AL+  + +GVTH ++EASS
Sbjct: 125 FVRQIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAAREGVTHAAMEASS 184

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ RLDG+ L A  FTN  +DH+DYH T + YF AK  LF  +LP+++ A+I  D  
Sbjct: 185 HGLDQRRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDAKAVINIDVD 244

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              ++   A    C V++VG     +HL  +      Q V     GK +     L G FQ
Sbjct: 245 RGVDMAAIAKARNCPVITVGRDSGDLHLGNIQVDATGQVVCFMHHGKQYVRRLGLIGGFQ 304

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N ++AA L IA G +   V + LE L  V GR +  GT   G  ++VDYAHT +++  
Sbjct: 305 AENVMLAAALVIACGEEPPHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIAT 364

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GR+I + G GGDRD  KRP+MG+ A + AD+  VTDDNPRSEDP  IRA 
Sbjct: 365 ALKALRPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPATIRAA 424

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           ++ G P  IE G+R EAI   ++ L   D L++AGKGHET  +V +
Sbjct: 425 VLLGAPEAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD 470


>gi|86749112|ref|YP_485608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572140|gb|ABD06697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 485

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 213/484 (44%), Positives = 282/484 (58%), Gaps = 26/484 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   D        +   +Q     +  ++ DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDLFSDD--------TAITVQAAALDVGGLAVDSRAVKPGDVFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                  A AI   +     D         P + + N R+ L+L A+R++ + P+ I AV
Sbjct: 53  -------AAAIEAGAVAVAGDHPPAGDLAVPFVRLTNPRRALALAAARMFPQQPQTIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TGTSGK+SVA+F +QI QR G +S  IG     T T S +     LTTP PI L ++L  
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGS---LTTPDPIALHRSLDA 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +
Sbjct: 163 IAREGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRD 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293
           L+     A+I AD   S EV+  A   G R++SVG  G     I L         Q++T+
Sbjct: 223 LVVDGGAAVISADHDCSAEVIDAARARGLRLISVGRNGDAGAGIRLIAAAVDGFAQRLTL 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G+++    PL GEFQ+ NALVAAGL I  G D A V   L+ L   PGR E VG  +
Sbjct: 283 DHAGRNYQVHLPLVGEFQIENALVAAGLVIGTGGDPAAVFAALDHLEGAPGRLELVGERN 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD  
Sbjct: 343 -GAPVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAESADAV 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           IVTDDNPR EDP  IRA I+   PG  E G+R EAIRTAI  L   D LV+AGKGHET  
Sbjct: 402 IVTDDNPRREDPATIRAAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQ 461

Query: 474 IVTN 477
           IV +
Sbjct: 462 IVGD 465


>gi|218532977|ref|YP_002423793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
 gi|218525280|gb|ACK85865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
          Length = 492

 Score =  339 bits (869), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 215/452 (47%), Positives = 278/452 (61%), Gaps = 10/452 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF   A A GA A+        +D      
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRP-EDLP---- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             T  + V + R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI  R G  S  +
Sbjct: 80  EATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASL 139

Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +++  AQ   LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG++L A
Sbjct: 140 GTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVELTA 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  AG  
Sbjct: 200 AAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHA 259

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCI 323
           + + G  G FI L +       Q +T+S  GKD+    PL G FQV N   A   A    
Sbjct: 260 IRTTGRGGDFIRLVEAGTEGFAQSLTLSHAGKDYRVRLPLVGGFQVENALVAAGLALATP 319

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A   D A V   LE L  VPGR E +G  + GG   VDYAH   +LE +L  +R   SGR
Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFASGR 378

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           ++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG  E G
Sbjct: 379 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 438

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +R EAIRT +  L   DVLVVAGKGHET  IV
Sbjct: 439 DRAEAIRTGVRDLRAGDVLVVAGKGHETGQIV 470


>gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
 gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
          Length = 490

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/458 (40%), Positives = 264/458 (57%), Gaps = 1/458 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L + P    +  +++++ DSR +QAG +F A+ G +  G  FI  A+  GA AI+  
Sbjct: 5   LSDLGLTPKSGGDVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTD 64

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A +    +    ++  ++VV++    L+  A+  +G  PE ++AVTGT+GK+SVASF +
Sbjct: 65  RAGAEIAATDLAATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTR 124

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +  G+ +  IG T    +F      TTP P+ L + L+ + + GVTH ++EASSHGL
Sbjct: 125 QIWEALGVPAVNIGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ R+DG++L A +FTNL +DH+DYH T +AYF AK+RLF  LLP    A++  DD +  
Sbjct: 185 DQKRMDGVRLAAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHGL 244

Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            V +     G  V+ V  Y    + +         Q V    +G        L G FQ  
Sbjct: 245 RVAEACSTRGIEVIGVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGAFQAM 304

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L AAGL IA G D   V   L K+  V GR +     S G  IYVDY+HT +SLE+ L
Sbjct: 305 NVLTAAGLVIAGGEDPEDVFAVLHKMEGVRGRMQLAARRSHGAPIYVDYSHTPDSLEVAL 364

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR++VVFG GGDRD  KRP+MG  A   +D+A VTDDNPR+EDP  IRA ++
Sbjct: 365 KALRPHVLGRLVVVFGAGGDRDTAKRPLMGNAATLWSDVAFVTDDNPRTEDPAAIRAAVL 424

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            G P      +R EAI  A++ML   D L++AGKGHET
Sbjct: 425 AGCPEATVVADRAEAILRAVDMLEPGDALLIAGKGHET 462


>gi|240141488|ref|YP_002965968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
 gi|240011465|gb|ACS42691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
          Length = 492

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 212/452 (46%), Positives = 276/452 (61%), Gaps = 10/452 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF   A A GA A+            A + 
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRP-----ADLP 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             T  + V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI  R G  S  +
Sbjct: 80  EATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASL 139

Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +++  A+   LTTP P+ L + L+ L  +G+T +++EASSHG++Q RLDG++L A
Sbjct: 140 GTVGIVTNRGAEYGSLTTPDPVTLHETLARLVDEGITDLAMEASSHGIEQRRLDGVELTA 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  AG  
Sbjct: 200 AAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHA 259

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCI 323
           + + G  G FI L +       Q +T++  GKD+    PL G FQV N   A   A    
Sbjct: 260 IRTTGRGGDFIRLVEAGTEGFAQSLTLAHAGKDYRVRLPLVGGFQVENALVAAGLALATP 319

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A   D A V   LE L  VPGR E +G  + GG   VDYAH   +LE +L  +R   SGR
Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFASGR 378

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           ++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG  E G
Sbjct: 379 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 438

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +R EAIR A+  L   DVLVVAGKGHET  IV
Sbjct: 439 DRAEAIRAAVRDLRAGDVLVVAGKGHETGQIV 470


>gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
 gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
          Length = 484

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/461 (41%), Positives = 271/461 (58%), Gaps = 12/461 (2%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F A  G + +G  +I +A+  GA AIV      + D +  I +  P    
Sbjct: 34  DNRKVAPGTVFGAFQGLRVNGEDYITEAVRAGAIAIVARPEAQV-DGAIHIAAANP---- 88

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
              R+  +  A+R +   P+  +AVTGT+GK+S     +QI +  G ++  IG     +S
Sbjct: 89  ---RQLFAQLAARFFAPFPDVTVAVTGTNGKTSTVELARQIWRMLGHNAASIGTLGVTTS 145

Query: 156 FAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             Q    LTTP  +     ++ L  +GVTH + EASSHGLDQ+R +G+ ++AG+FTNL R
Sbjct: 146 VDQVSTGLTTPDIVTFLANMAGLRREGVTHAAFEASSHGLDQYRTEGLPVVAGAFTNLSR 205

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+DYH    +YF+AKMRLF+E++  +  A+I+ADD++S++ + RA   G RVLSVG QG
Sbjct: 206 DHLDYHGDMDSYFDAKMRLFDEVVAPDGSAVIWADDSWSEKAIARATKRGLRVLSVGVQG 265

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           + + L         Q + I  EG  +    PL G +Q  NAL AAGL IA G D+A V+E
Sbjct: 266 RALQLANRTPTQLGQTLEIEAEGTRYKVNLPLIGAYQAANALTAAGLVIATGGDAARVME 325

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L ++  V GR E    +  G  +YVDYAHT + L   ++ +R  T GR+I +FG GGDR
Sbjct: 326 LLGRVQPVRGRLERAVISQTGAPVYVDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGDR 385

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           D GKRP MGK+A DL+D  IVTDDNPRSE+P  IRA ++ G P   E G R +AI  AI 
Sbjct: 386 DAGKRPQMGKVAADLSDHVIVTDDNPRSEEPSAIRAAVLAGAPDAQEIGGRRDAIAAAIA 445

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494
                D++++AGKGHE   I+  G++ +   D  + RE  G
Sbjct: 446 QAGADDIVLLAGKGHEQGQII--GDRVLPFDDVTVARECAG 484


>gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
          Length = 485

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 218/480 (45%), Positives = 285/480 (59%), Gaps = 22/480 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DLI        N  +I P      ++  V+ DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MKLRDLIG-------NDAAIEPA-VAALEVTGVALDSRVVRPGDLFFALAGSKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                   +A V + A ++    A      P + V N R+ L+L A+R +   P  I AV
Sbjct: 53  --------DAAVAAGAVAIVGDHAPDGCKVPFIAVANPRRALALAAARFFPAQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +R G +S  IG    +S        LTTP PI L + +  ++ 
Sbjct: 105 TGTSGKTSVAAFTRQIWERLGHASASIGTIGLVSPKRTVYGSLTTPDPIALHRQMDEIAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T   Y  AK+RLF EL+P
Sbjct: 165 EGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRELVP 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISV 295
               A+I AD   S E +  A   G RV++VG  G    + I L +V      Q++T+  
Sbjct: 225 PGGAAVISADHDCSAEAIDAAKARGLRVMAVGRNGDGAGEGIRLTEVGVDGFSQKLTVEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            GK +  L PL GEFQV NALV+AGL I  G D+A V   LE L    GR E VG  + G
Sbjct: 285 RGKRYVVLLPLAGEFQVENALVSAGLAIGTGSDAANVFASLEHLEGAKGRLERVGERN-G 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I+VDYAH  ++L   L+ +R     R++VVFG GGDRD GKRPIMG+IA + AD  I+
Sbjct: 344 APIFVDYAHKPDALAKALQALRPYAKRRLVVVFGAGGDRDAGKRPIMGEIAAENADGVII 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSE PE IRA I+    G  E G+R  AIR AIE L + D L++AGKGHET  IV
Sbjct: 404 TDDNPRSEQPEAIRAAILATAKGAREIGDRAAAIRAAIEELEQGDALLIAGKGHETGQIV 463


>gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 493

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 180/453 (39%), Positives = 265/453 (58%), Gaps = 1/453 (0%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R R +  ++ DSR ++ G++F  + G++  G  FI  A+  GA AI+  +  +       
Sbjct: 18  RGRPVTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVL 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +   ++V ++ R+  S  A+  YG  P  ++ VTGT+GK+SVASF +Q+ Q  G ++ 
Sbjct: 78  DGAEVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGLGHAAA 137

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG T     F+ D   TTP P+ L  AL+ +++QG+TH ++EASSHGLDQ RLDG++L+
Sbjct: 138 NIGTTGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLDGVRLV 197

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTN  +DH+DYH+T +AYF AK  LF  +L  +  A+I  DD    ++M  AH AG 
Sbjct: 198 AAGFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGA 257

Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +L+VG ++   + L       + Q++  + +G        L G FQ  N LVA GL +A
Sbjct: 258 ELLTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVMA 317

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G     ++  L +L  V GR + V     G  ++VDYAHT ++L+  L+ +R    GR+
Sbjct: 318 TGAQVGDLVPLLPRLATVRGRMQKVARRENGATVFVDYAHTPDALKTALRALRPHVLGRL 377

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           +VVFG GGDRD GKRP+MG  A   AD+  VTDDNPRSEDP  IRA++  G P   +  +
Sbjct: 378 VVVFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRAGCPEATDVPD 437

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R EAI   ++ L   DVL++AGKGHET   V +
Sbjct: 438 RAEAILRGVDALEPGDVLLIAGKGHETGQTVGD 470


>gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 487

 Score =  336 bits (861), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 190/469 (40%), Positives = 267/469 (56%), Gaps = 11/469 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL +   + R   I  ++ DSR +QAG++F A+ G+K  G  FI  A+   A AI+  
Sbjct: 1   MQQLGLTAAEGRNPAITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAILTD 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFV 133
           +  +         S+  I+V D+ R  L+ FAS LY G  P+ + AVTGT+GK+SV++FV
Sbjct: 61  AVGAEIAADELANSDAAIIVTDDPRSALA-FASALYFGAQPQIMTAVTGTNGKTSVSTFV 119

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +QI     L +  +G T    S       TTP PI L + L+ L  +G++H ++EASSHG
Sbjct: 120 RQIWNLLDLEAVNLGTTGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHG 179

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           LDQ RLDG+ L A  FTN  +DH+DYH T +AYF+AKM LF  +L  +  A++  DD   
Sbjct: 180 LDQRRLDGVNLAAAGFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKG 239

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFDFLFPLPG 308
            EV   A   G  ++ VG   +      +C +  +     Q +      + F     L G
Sbjct: 240 AEVAMIAQAHGHELIGVGRDPE----ADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIG 295

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  N L+AAGL IA G D A V + L  L  V GR +   T + G  ++VDYAHT ++
Sbjct: 296 GFQAENVLLAAGLVIACGEDPARVFDTLGDLETVHGRMQLAATRTNGAAVFVDYAHTPDA 355

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +E  LK +R    GR++ + G GGDRD+GKRP+MG+ A + AD+  VTDDNPRSEDP  I
Sbjct: 356 VETALKAMRPHVMGRLVALIGAGGDRDRGKRPLMGQAATENADLVFVTDDNPRSEDPALI 415

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RA ++ G P  IE  +R EAI  A++ L   D L++AGKGHET   V +
Sbjct: 416 RAAVMGGAPEAIEVADRAEAILRAVDALGPGDALLIAGKGHETGQTVGD 464


>gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Bradyrhizobium sp. ORS278]
          Length = 486

 Score =  335 bits (860), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 216/486 (44%), Positives = 285/486 (58%), Gaps = 29/486 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL       L +Q  + P +    +++ +++DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLHDL-------LGDQAGLDP-RVAAVEVSGLAADSRAVRPGDLFFALSGTKTDGTRFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A+    A +  D         P + + N R+ L+L ASR++ + P  I AV
Sbjct: 53  AAAVAAGAIAVAGHEAPA-GDLP------VPFVSLPNPRRALALAASRVFPRQPATIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLAKALS 175
           TGTSGK+SVA+F +QI Q  G ++  IG    IS    D R     LTTP PI L + + 
Sbjct: 106 TGTSGKTSVAAFTRQIWQSLGHNAASIGTVGLIS----DKRTVYGSLTTPDPIALHRQID 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++  GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF 
Sbjct: 162 EITQDGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFR 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQV 291
           +L+P   PA+I AD   S EV+  A   G R+++VG  G      I L         QQ+
Sbjct: 222 DLVPPGGPAVISADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQL 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +   G+      PL G FQ+ NALVAAGL I  G D   V E LEKL    GR E VG 
Sbjct: 282 ELQHCGRITFLRLPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKGRLELVGE 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           ++ G  I++DYAH  ++L   L  +R     +++VVFG GGDRD GKRP+MG+IA   AD
Sbjct: 342 HN-GAPIFIDYAHKPDALAKALHALRPYAQRKLVVVFGAGGDRDSGKRPLMGEIAAAGAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             IVTDDNPRSE+P  IRA I+   PG  E G+R EAIR AI  L   D LV+AGKGHET
Sbjct: 401 RVIVTDDNPRSENPAAIRAAILAAAPGAREIGDRAEAIRVAISELQPGDALVIAGKGHET 460

Query: 472 VHIVTN 477
             I+ +
Sbjct: 461 GQIIGD 466


>gi|254564002|ref|YP_003071097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
 gi|254271280|emb|CAX27292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
          Length = 492

 Score =  335 bits (860), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 218/452 (48%), Positives = 282/452 (62%), Gaps = 10/452 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF   A A GA A+            A + 
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRP-----ADLP 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             T  + V + R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI  R G  S  +
Sbjct: 80  EATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASL 139

Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +++  AQ   LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG++L A
Sbjct: 140 GTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVELTA 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  AG  
Sbjct: 200 AAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHA 259

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI--- 323
           + + G  G FI L +       Q +T+S   KD+    PL G FQV NALVAAGL +   
Sbjct: 260 IRTTGRGGDFIRLIEAGTEGFAQSLTLSHASKDYHVRLPLVGGFQVENALVAAGLALATQ 319

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A   D A V   LE L  VPGR E +G  + GG   VDYAH   +LE +L  +R   SGR
Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFASGR 378

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           ++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG  E G
Sbjct: 379 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 438

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +R EAIR  +  L   DVLVVAGKGHET  IV
Sbjct: 439 DRAEAIRAGVRDLRAGDVLVVAGKGHETGQIV 470


>gi|163854034|ref|YP_001642077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
 gi|163665639|gb|ABY33006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
          Length = 492

 Score =  335 bits (860), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 212/454 (46%), Positives = 277/454 (61%), Gaps = 14/454 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSAT 85
           R +  +++DSR +  G +FVA+ G   DG LF   A A GA A+         L + +A 
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPDDLPEATAW 84

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           I        V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI  R G  S 
Sbjct: 85  IE-------VADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESA 137

Query: 146 QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G    +++  A+   LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG++L
Sbjct: 138 SLGTVGIVTNRGAEYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVEL 197

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  AG
Sbjct: 198 TAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAG 257

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGL 321
             + + G  G FI L +       Q +T++  GKD+    PL G FQV N   A   A  
Sbjct: 258 HAIRTTGRGGDFIRLVEAGTEGFAQSLTLTHAGKDYRVRLPLVGGFQVENALVAAGLALA 317

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             A   D A V   LE L  VPGR E +G  + GG   VDYAH   +LE +L  +R   S
Sbjct: 318 TPAGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFAS 376

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG  E
Sbjct: 377 GRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEE 436

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            G+R EAIR  +  L   DVLVVAGKGHET  IV
Sbjct: 437 IGDRAEAIRAGVRDLRAGDVLVVAGKGHETGQIV 470


>gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 495

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/464 (40%), Positives = 267/464 (57%), Gaps = 3/464 (0%)

Query: 15  INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P+  R  E  +  ++ DSRH++ G++F A+ G+   G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   ++V ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALQGSTAALIVAEDPRQALAGAAALWFGRQPATMVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLADAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E   ++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A + G +V+  G+  +  + L         Q +  S +G       PL G FQ
Sbjct: 248 GPEIAALARDRGQKVIGTGFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTRLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAAGL I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAAGLAIGAGDAPERVFATFPQLQGVRGRMQLAATRQNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRIIVVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIIVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I+   P   E G+R EAI   ++ L   D L++AGKGHE   IV
Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHEAGQIV 471


>gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
 gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
          Length = 496

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/463 (38%), Positives = 269/463 (58%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +     R+ K+ +++ DSR ++ G++F A+ G +  G  FI  A+  GA A++  
Sbjct: 11  LRDLGLTARGGRDVKVTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGAGAVLTD 70

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         ++  ++V ++ R+ L+  ++  +G  PE ++AVTGT+GK+SVA+F +
Sbjct: 71  AAGAKIAADVLGGADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTSVATFTR 130

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI Q  GL +  +G T     +    + TTP PI L + L+  +  GVTH ++EASSHGL
Sbjct: 131 QIWQELGLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLAGAAESGVTHAAMEASSHGL 190

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q RLDG++L+A  FTN  +DH+DYH + + YF AK  LF  +LP++  A+I  DD    
Sbjct: 191 SQRRLDGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINIDDPRGV 250

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +++  A   G  VL+VG +   I L+        Q++ +S EG+       L G FQ  N
Sbjct: 251 DMVAIARARGQEVLTVGREAADICLEAQRFDATGQEIRLSFEGEVRQERLGLIGGFQADN 310

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AAGL IA G D   V + L  L  V GR +       G  ++VDYAHT +++   +K
Sbjct: 311 VLLAAGLVIACGGDPDDVFDVLPMLGTVRGRMQLAAMRDNGAAVFVDYAHTPDAVATAIK 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD+GKR +MG+ A + AD  IVTDDNPRSEDP  IRA ++ 
Sbjct: 371 ALRPHVMGRLVAIVGAGGDRDKGKRLLMGQAAAEFADSVIVTDDNPRSEDPASIRAMVME 430

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G P  +E G+R EAI   ++ L   D L++ GKGHE+  IV +
Sbjct: 431 GAPEALEVGDRAEAILRGVDALGPGDALLICGKGHESGQIVGD 473


>gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
 gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
          Length = 495

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/470 (39%), Positives = 267/470 (56%), Gaps = 7/470 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L +     RE +I  ++ DSR ++ G++F A+ G +  G  FI  A+   A AI+  
Sbjct: 4   LAELGLTARGGREAQITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRMKAGAILTD 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++V  + R+ L+  AS  +G HP+ ++AVTGT+GK+SV++F +
Sbjct: 64  AKGAEIAADELAASDAAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGKTSVSTFCR 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +   L    +G T    ++    + TTP PI L + ++  +  G+THV++EASSHGL
Sbjct: 124 QIWEELDLPGVNLGTTGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVAMEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  F+N  +DH+DYH+T +AYF+AKM LF+ +L ++  A+I  DD   K
Sbjct: 184 DQRRLDGVILAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVINLDDPKGK 243

Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           EV       G  V+ VG +    + L         Q +    +G+       L G FQ  
Sbjct: 244 EVAAICTARGQEVIGVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARLELIGGFQAE 303

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A+GL IA G D   V + L+ L  V GR E   T   G  ++VDYAHT +++E  L
Sbjct: 304 NVLLASGLVIAAGADPDEVFDTLQYLTTVRGRMELAATRQSGAAVFVDYAHTPDAVETAL 363

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GRIIV+ G GGDRD GKRP+MG  A   ADI IVTDDNPRSEDP  IRA ++
Sbjct: 364 RAMRPHVMGRIIVIVGAGGDRDAGKRPLMGAAAAQHADIVIVTDDNPRSEDPAAIRAAVM 423

Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G           E G+R EAI   I+ML   D L++AGKGHET  +V +
Sbjct: 424 AGAVDAGGSDSITEVGDRAEAILRGIDMLGAGDALLIAGKGHETGQVVGD 473


>gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 495

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 188/450 (41%), Positives = 257/450 (57%), Gaps = 1/450 (0%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S DSR ++ G +F A+ G+K  G  FI  A+   A AI+     +         S
Sbjct: 23  EITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYALRMEAAAILTDREGARIAADELAAS 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            T ++V ++ R  L+  A+  +G  PE ++AVTGT+GK+SVASF +QI    GL +  IG
Sbjct: 83  KTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGTNGKTSVASFTRQIWTELGLMAANIG 142

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T    +FA  +  TTP PI L + L+ +S  GVTH ++EASSHGLDQ RL+G+ L A  
Sbjct: 143 TTGVEGAFAAPSPHTTPEPITLHRLLAEMSQAGVTHAAMEASSHGLDQRRLEGVHLAAAG 202

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN  +DH+DYH +   YF AK RLF  +LP +  A++  DD   +E+ + A   G  V+
Sbjct: 203 FTNFTQDHLDYHASFDDYFRAKARLFNRVLPDDGVAVLNVDDPRGRELEEIAQERGQEVI 262

Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+G  +   + L         QQ+     G+       L G FQ  N LVAAGL IA G 
Sbjct: 263 SIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRPQTVQLDLIGGFQAENVLVAAGLAIASGS 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D   V      L  V GR +       G  I+VDYAHT ++L   L+ +R    G+++VV
Sbjct: 323 DPDEVFATFPALTTVRGRMQLAAKRDNGAAIFVDYAHTPDALATALEALRPHVMGKLVVV 382

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FG GGDRD  KR +MGK A D AD+ IVTDDNPR+EDP  IRA ++ G P   E G+R E
Sbjct: 383 FGAGGDRDTTKRKLMGKAAADYADVVIVTDDNPRTEDPAAIRAMVLEGCPDANEYGDRAE 442

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           AI   ++ML+  D L++AGKGHET  IV +
Sbjct: 443 AILRGVDMLDPGDALLIAGKGHETGQIVGD 472


>gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
 gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
          Length = 492

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 188/475 (39%), Positives = 265/475 (55%), Gaps = 6/475 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +   Q R+  I  ++ DSR +  G +F A+ G K  G  FI  A+  GA A++  
Sbjct: 4   LTALGLTAAQGRDATITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALRMGAAAVLTD 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S+  ++V ++ R+ L+  AS  +G HP  ++AVTGT+GK+SV+SF +
Sbjct: 64  AAGARIAADVLAASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNGKTSVSSFCR 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +  GL+   +G T    ++A   + TTP PI L + L+  +  G+THV++EASSHGL
Sbjct: 124 QIWEEMGLAGVNLGTTGVEGAWAYPLKHTTPEPITLHRVLAEAAGHGITHVAMEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH T ++YF AKM LF  +L ++  A++  DD    
Sbjct: 184 DQRRLDGVVLAAAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAVVNLDDPKGP 243

Query: 255 EVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            V       G  V+ VG      + L         Q +  + +G+       L G FQ  
Sbjct: 244 VVAAICTQRGQEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRPHHARLALIGGFQAE 303

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL IA G D   V   L +L  V GR E   T + G  ++VDYAHT +++E  L
Sbjct: 304 NVLLAAGLVIAAGADPLDVFAALSQLGTVRGRMELAATRANGAAVFVDYAHTPDAVETAL 363

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GRI+ + G GGDRD  KRP+MG  A + AD  IVTDDNPRSEDP  IRA ++
Sbjct: 364 KALRPHVMGRIVAIIGAGGDRDSTKRPLMGAAAAEFADSVIVTDDNPRSEDPASIRAAVL 423

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G  G     E  +R EAI   I+ML   D L++AGKGHE+  I+  G+  M  D
Sbjct: 424 AGAQGCDSLSEVADRAEAILRGIDMLQPGDALLIAGKGHESGQII--GDTIMPFD 476


>gi|39936597|ref|NP_948873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650453|emb|CAE28976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 485

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 203/455 (44%), Positives = 271/455 (59%), Gaps = 18/455 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G +F A+ G K DG  F+       A A+   +     +       +
Sbjct: 22  IGGLAVDSRAVKPGDLFFALAGAKTDGARFV-------AAAVAAGAVAVAGEHRPEGDLS 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + + N R  L+  A+R Y + PE I AVTGTSGK+SVA+F +QI QR G ++  IG 
Sbjct: 75  VPFVQLSNARLALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHAAASIGT 134

Query: 150 ----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
               T T S +     LTTP PI L ++L  ++ +G+TH+++EASSHGLDQ RLDG+++ 
Sbjct: 135 IGLVTPTRSVYGS---LTTPDPIALHRSLDEIAREGITHLALEASSHGLDQFRLDGVRVA 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           AG FTNL RDH+DYH T   Y NAK+RLF  L+     A+I AD   S +V++ A   G 
Sbjct: 192 AGGFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQDGGAAVISADHDCSAQVIEAAGARGL 251

Query: 266 RVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           R++++G  G     I L         QQ+T+   GK      PL GEFQ+ NALVAAGL 
Sbjct: 252 RLITIGRNGDPGAGIKLIDAAVEGFAQQLTVEHAGKRHRIKLPLVGEFQIENALVAAGLV 311

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I  G D+A     LE L   PGR + VG  + G  ++VDYAH  ++L   L+ +R     
Sbjct: 312 IGTGGDAAASFAALEHLEGAPGRLDLVGARN-GAPVFVDYAHKPDALAKTLQALRPYAKR 370

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           +++VVFG GGDRD GKRP+MG IA + AD+ I+TDDNPRSEDP  IRA I+   PG  E 
Sbjct: 371 KLVVVFGAGGDRDSGKRPLMGAIAAENADVVIITDDNPRSEDPATIRAAILAAAPGAREI 430

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+R EAIRTAI  L   D LV+AGKGHET  IV +
Sbjct: 431 GDRAEAIRTAIGELQPGDALVIAGKGHETGQIVGD 465


>gi|83592291|ref|YP_426043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575205|gb|ABC21756.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 493

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/466 (40%), Positives = 264/466 (56%), Gaps = 7/466 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++DSR +  GW+F A+ G K DG  FIP A+A GA A++     +L        + 
Sbjct: 30  IAGLTADSRAVAPGWLFAALPGVKADGRAFIPAALAAGASAVLAPEGTALPP-----DAP 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++   N R+  +  A+   G  P  ++AVTGT+GK+S  SF +QI  R G ++  +G 
Sbjct: 85  AALVTAANPRQAFARMAAAFAGAQPATVVAVTGTNGKTSSVSFTRQIWDRLGRTAASLGT 144

Query: 150 TSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               S  + +   +TTP P+ L K L+ ++  GV  +++EASSHGLDQ+RLDG++L A +
Sbjct: 145 LGAESGVYRRAGSMTTPDPVSLHKMLAEMTEAGVDALAMEASSHGLDQYRLDGVRLSAAA 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T  AY  AK RLF E+L +E  A++ ADD     +     + G  VL
Sbjct: 205 FTNLTRDHLDYHHTMDAYLAAKARLFGEVLGREGVAVLNADDPAFPTLAALCRDRGQSVL 264

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G   K + L  V A  + Q + + + G+    L PL G+FQ  N L A GL IA G  
Sbjct: 265 DYGRSAKTLRLAGVSAKAHGQSLDLELFGRHHSVLLPLVGDFQAMNVLCALGLAIATGAP 324

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               +  L  L  VPGR E V   + G  +YVDYAHT + L   L+ +R    G+++ VF
Sbjct: 325 VDAAVATLASLEGVPGRLEMVARRASGAPVYVDYAHTPDGLVTALRALRPHCRGKLVCVF 384

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           GCGGDRD+ KRP+MG+   + AD+AI+TDDNPRSEDP  IRAE   G P  IE   R  A
Sbjct: 385 GCGGDRDRAKRPLMGRAVAEGADVAILTDDNPRSEDPAAIRAEARVGCPDAIEIDGRDAA 444

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           IR  + +L   D+LV+AGKGHET   +        VD D  R  +G
Sbjct: 445 IRAGVALLGPNDLLVIAGKGHETGQTIGTVVHPF-VDADHARAAVG 489


>gi|316933181|ref|YP_004108163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
 gi|315600895|gb|ADU43430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
          Length = 485

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 212/484 (43%), Positives = 281/484 (58%), Gaps = 26/484 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   +        +       +R I  ++ DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDLFSAE--------TEIAASAADRPIGGLAVDSRAVRPGDLFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                  A AI   +     +         P + + N R  L+  A+R Y + PE I AV
Sbjct: 53  -------AAAIAAGAVAVAGEHPPAGDLAVPFVQLSNPRLALAQAAARFYPRQPEVIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TGTSGK+SVA+F +QI QR G +S  IG     T T S +     LTTP PI L ++L  
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGS---LTTPDPIALHRSLDE 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T   Y NAK+RLF  
Sbjct: 163 IAGEGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRH 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTI 293
           L+     A+I AD   S EV++ A   G R++++G  G   + I L         Q +T+
Sbjct: 223 LVQDGGAAVIAADHDCSAEVIEAAGARGLRLITIGRNGDPGEGIALIDAAIDGFAQILTV 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  G+ +    PL GEFQ+ NALVAAGL I  G DSA     LE L   PGR + VG + 
Sbjct: 283 AHAGRRYSIKLPLVGEFQIENALVAAGLVIGTGGDSAASFAALEHLEGAPGRLDLVGAH- 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD  
Sbjct: 342 RGAPVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAEHADTV 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           IVTDDNPRSEDP  IRA I+   PG    G+R EAIRTAI  L   D LV+AGKGHET  
Sbjct: 402 IVTDDNPRSEDPAAIRAAILAAAPGARAIGDRAEAIRTAIGELQPGDALVIAGKGHETGQ 461

Query: 474 IVTN 477
           IV +
Sbjct: 462 IVGD 465


>gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
 gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
          Length = 499

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 180/446 (40%), Positives = 265/446 (59%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ ++ DSR    G +F A+ G++  G  FIP A+ QGA AI+  +A +         S+
Sbjct: 29  ISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGAVAILTDAAGAKIAAQPLEESH 88

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +++V++ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+FV+QI    G  +  +G 
Sbjct: 89  AALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSVATFVRQIWCALGHEAVNLGT 148

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    +++     TTP PI L +AL+  +  GVTH ++EASSHGLDQ RLDG++L A  F
Sbjct: 149 TGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEASSHGLDQCRLDGVQLAAAGF 208

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN  +DH+DYH+T +AYF AK  LF  +LP++  A+I  +D+   E+   A   G  V+S
Sbjct: 209 TNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMNDSRGAEMRAVAAARGQEVIS 268

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +G     I L  +      Q +  +   + +     L G FQ  N L+A GL IA G D 
Sbjct: 269 IGRGLGDISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIGGFQAENVLLACGLVIAGGEDP 328

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A V + L +L  V GR E   T   G  ++VDYAHT +++   +K +R    GR++ + G
Sbjct: 329 AAVFDTLPQLTTVRGRMEHAATRDNGASVFVDYAHTPDAVATAIKALRPHVLGRLVAIVG 388

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  G P  +E G+R EAI
Sbjct: 389 AGGDRDATKRPLMGRAAQENADVVIVTDDNPRSEDPAVIRAAVRGGAPDALEVGDRAEAI 448

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIV 475
              ++ML+  D L++ GKGHE+  +V
Sbjct: 449 LRGVDMLSTGDALLICGKGHESGQVV 474


>gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 495

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 185/464 (39%), Positives = 267/464 (57%), Gaps = 1/464 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L +  M  +E +I  +S DSR ++ G +F A+ G    G  FI  A+ QGA AI+  
Sbjct: 10  LAELGLTAMGAQEAQITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQGAAAILTD 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +         S   +++  + R+ L+  A+  +G  PE  +AVTGT+GK+SVASF +
Sbjct: 70  QKGAEIAKKEIEASGAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKTSVASFTR 129

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP PI L + ++ ++  G+THV++EASSHGL
Sbjct: 130 QIWALLGFEAANVGTTGVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAMEASSHGL 189

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG++L A  FTN  +DH+DYH   +AYFNAK  LF  +L ++  A++  +DA  +
Sbjct: 190 EQRRLDGMQLAAAGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVVNRNDARFQ 249

Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++ + A   G  VLSVG  +   I +         Q V      + F+   PL G FQ  
Sbjct: 250 DISRLAEKRGQEVLSVGRDENASIRIIAQRFEPMGQTVLFEYNDRTFEVKLPLIGGFQAE 309

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL IA G D+  +   L +L  V GR E   T   G  I+VDYAHT ++L    
Sbjct: 310 NVLMAAGLAIASGADANEIFGVLPQLKTVRGRMELAATRKNGASIFVDYAHTPDALATAC 369

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GR+IVVFG GGDRD+GKRP+MG+ A   AD+  VTDDNPRSEDP  IR E++
Sbjct: 370 RALRPHVLGRLIVVFGAGGDRDKGKRPLMGQAAEAHADVIFVTDDNPRSEDPAVIRREVM 429

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G    IE  +R EAI   ++ L   DVL++AGKGHET  ++ +
Sbjct: 430 DGCIEAIEVADRAEAILRGVDALGAGDVLLIAGKGHETGQVIGD 473


>gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 489

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 196/481 (40%), Positives = 274/481 (56%), Gaps = 14/481 (2%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P+     +I+ +++DSR I+ G IF A+ G K DG  FI  A+  GA A++  +     
Sbjct: 14  LPILPENPEISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAAAVLAPTDTQWP 73

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
               T     P+++  N R  L+L A+ L G  P+++ A+TGT+GK+S A F++QI    
Sbjct: 74  TGVPTC----PLILAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTADFIRQIWALQ 129

Query: 141 GLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           G  +  IG        A+D       LTTP P+ LA  L+ L+  G  HV++EASSHGL+
Sbjct: 130 GFKAAAIGTLGLTG--AEDTSISFPALTTPDPVALANGLAALTQAGFNHVALEASSHGLE 187

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK 254
           Q RLDG+ L A  FTNL RDH+DYH T +AY  AK++LF+ LLP+++ A   AD DA + 
Sbjct: 188 QGRLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAANADMDAQTL 247

Query: 255 EVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           + ++  A     R+  VG QG  + L    A+   Q+++I   G     L P+PG FQ  
Sbjct: 248 QAIRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLPIPGRFQAD 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A  L      + A +L  L  L  V GR E       G   YVDYAHT ++L  +L
Sbjct: 308 NVLLAVALAAQDDAEIADILPLLPHLKGVRGRLERATVLPNGACAYVDYAHTPDALARLL 367

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++R    G+++VV G GGDRD GKRP+MG+ A+  ADIAI+TDDNPR+E+P  IRAEI 
Sbjct: 368 ASLRPHARGKLVVVLGAGGDRDSGKRPLMGQEAIKGADIAIITDDNPRTENPASIRAEIK 427

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            G P  +E  +R +AI  A+ ML   DVLVVAGKGHE   I+ N       D  ++R + 
Sbjct: 428 AGAPQALEIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGNTILPFD-DAAVLRTLA 486

Query: 494 G 494
           G
Sbjct: 487 G 487


>gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
 gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
          Length = 494

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 187/456 (41%), Positives = 261/456 (57%), Gaps = 18/456 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G +F A+ G +  G  F+  A+ +GA A++   A       A     
Sbjct: 23  VTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAVLTDRAGEDTARQALAGGT 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVV++ R  LS  A+  +G  P  ++AVTGT+GK+SVA+F + I Q  GL +  IG 
Sbjct: 83  VPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVATFTRMIWQALGLDAANIGT 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    +FA  +  TTP PI L + L+ +++ GVTH ++EASSHGL Q RLDG+ L A +F
Sbjct: 143 TGVEGAFAAPSSHTTPEPITLHRLLAEMAAAGVTHAAMEASSHGLAQRRLDGVMLKAAAF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN  +DH+DYH T   YF+AK  LF  +LP+E  A+I  DD     +++RA   G +++ 
Sbjct: 203 TNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDPKGAVLVERARARGQKLIR 262

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAG 320
           VG QG        C I  + Q      G+D  FL+         PL G FQ  N L AAG
Sbjct: 263 VG-QG------DTCEIQLQGQ-RFDAAGQDVRFLWQGGPQMVRLPLIGGFQAMNVLTAAG 314

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L IA G +   V E L +L  V GR +   T + G  ++VDYAHT +++E  L+ +R   
Sbjct: 315 LVIACGAEPKAVFEVLPQLATVRGRMQLAATRTNGATVFVDYAHTPDAVETALRALRPHV 374

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439
            GRII + G GGDRD+ KRP+MG  A   AD  IVTDDNPR+EDP  IRA ++ G  P  
Sbjct: 375 LGRIIAIVGAGGDRDRTKRPLMGAAAAAHADAVIVTDDNPRTEDPALIRAAVMAGAGPEA 434

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            E G+R EAI   ++ L   D L++ GKGHE   ++
Sbjct: 435 TEVGDRAEAILRGVDALGPGDALLIMGKGHERGQVI 470


>gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 493

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 184/463 (39%), Positives = 263/463 (56%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L++         I  ++ DSR ++ G++F A+ G +  G  FI  A+  GA AI+  
Sbjct: 8   LSELALTARGGANPDITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAAAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++V ++ R+ L+  A+  +G  P+ I+AVTGT+GK+SVASFV+
Sbjct: 68  ARGAEIAADELAASDAALIVTEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSVASFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI     L++  +G T    ++      TTP PI L + L+  +  GVTH ++EASSHGL
Sbjct: 128 QIWTELDLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  F+N  +DH+DYH T +AYF AK  LF+ +LP++  A+I   D    
Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVINLGDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+ + A   G  +L+VG +G  + L         Q +  S  GK       L G FQ  N
Sbjct: 248 EMRRIAEARGQNILTVGPEGADLCLLNQRFDATGQDLRFSWRGKVRQTRLNLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V + L  L  V GR +   T S G  ++VDYAHT +++   LK
Sbjct: 308 VLLACGLVIAAGEDPDRVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALK 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MGK A D AD+  VTDDNPRSEDP  IR  ++ 
Sbjct: 368 AMRPHVMGRLIAIVGAGGDRDATKRPLMGKAAADNADLVFVTDDNPRSEDPASIRTAVML 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G P   E G+R EAI   I+ L   D L++AGKGHET  IV +
Sbjct: 428 GAPDATEVGDRAEAILRGIDALQPGDALLIAGKGHETGQIVGD 470


>gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 493

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 184/471 (39%), Positives = 271/471 (57%), Gaps = 2/471 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL++     R+  I+ ++ DSR ++ G++F A+ G++  G  FI  A+  GA AI+  
Sbjct: 8   LSQLALTARGGRDPDISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGASAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +    +    S   ++VV++ R+ L+L A+  +G  P  ++AVTGT+GK+SV++FV+
Sbjct: 68  AEGARIAAAELAASQAALVVVEDPRQTLALTAALWFGAQPATMVAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    ++      TTP PI L + L+   + GVTH ++EASSHGL
Sbjct: 128 QIWTELGHDAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP +  A+I  DD    
Sbjct: 188 EQRRLDGVVLKAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMDDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  VL+VG     + L         Q +  S  GK +     L G FQ  N
Sbjct: 248 EMRAIAAARGQNVLTVGRGPCDLSLTNQRFDATGQDLLFSWRGKAYQARLDLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G     V E L  L  V GR +   T + G  ++VDY+HT +++   L+
Sbjct: 308 ILLACGLVIASGGAPERVFETLPHLGTVRGRMQLAATRANGAAVFVDYSHTPDAVATALR 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MGK A++ ADI I+TDDNPRSEDP  IRA ++ 
Sbjct: 368 ALRPHVMGRLVAIVGAGGDRDPYKRPLMGKAAVENADIVIITDDNPRSEDPALIRAAVMQ 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           G PG  E G+R EAI   ++ L   D L++ GKGHET  +V  G++ +  D
Sbjct: 428 GAPGATEVGDRAEAILRGVDTLEPGDALLICGKGHETGQVV--GDQVLPFD 476


>gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
 gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
          Length = 495

 Score =  332 bits (852), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 186/463 (40%), Positives = 268/463 (57%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      + +I  ++ DSR ++ G++F A+ G++  G  FIP A+ +GA AI+  
Sbjct: 10  LSQLGLTARGGADPQIRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTD 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S+  ++VV++ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+FV+
Sbjct: 70  AAGAGIAAKVLDESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVR 129

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 130 QIWTELGHEAVNMGTTGIEGAWSYPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 189

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A+I  +D    
Sbjct: 190 DQRRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRGA 249

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  V+SVG     + L  +      Q +  +   K +     L G FQ  N
Sbjct: 250 EMRAVAAARGQEVISVGRGLGDLSLLGLRYDGTGQDMRFAWHDKPYQVRLNLIGGFQAEN 309

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V E L  L  V GR +       G  ++VDYAHT +++   +K
Sbjct: 310 VLLACGLAIAGGEDPERVFETLPHLTTVRGRMQLAAERDNGSAVFVDYAHTPDAVASAIK 369

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 370 ALRPHVLGRLIAIVGAGGDRDTSKRPLMGQAAHENADVVIVTDDNPRSEDPAAIRAAVKG 429

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G PG IE G+R EAI    +ML   D L++ GKGHET   V +
Sbjct: 430 GAPGCIEIGDRAEAILRGADMLGPGDALIICGKGHETGQTVGD 472


>gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
 gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 485

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 207/482 (42%), Positives = 280/482 (58%), Gaps = 22/482 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D        +       E  +  +++DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MKLRELFGDD--------ATMDAPAGELAVTGLAADSRAVKPGDLFFALAGSKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A+    A +        R   P +   N R+ L+L A++ Y + P  I AV
Sbjct: 53  DAAIASGAVAVAGDHAPA--------RGRVPFIATPNPRRALALAAAKFYPRQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G  S  IG    ++ S A    +TTP PI L + L  L+ 
Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGYLSASIGTVGVVAPSRAVYGSVTTPDPIELHRELDQLAG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ+R+DG+++ A  FTNL RDH+DYH T   Y   K+RLF +L+ 
Sbjct: 165 EGVTHLALEASSHGLDQYRVDGVRVRAAGFTNLSRDHMDYHPTVAHYLETKLRLFRDLVE 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295
            +  A+I AD   S  V++ A      V+ VG +G      I L +       Q+VT+  
Sbjct: 225 SDGIAVICADHDCSDTVIEAAGARNVPVMRVGRRGDGARMGIRLVEAAIDGFAQRVTLEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++     PL GEFQ+ NALV+AGL I  G D       LE L    GR E +G  + G
Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGGDVDQAFAALEHLEGARGRIERIGERN-G 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA D AD+ IV
Sbjct: 344 AQVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA I+   PG  E G+R EAI TAI  L   D L++AGKGHET  IV
Sbjct: 404 TDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIGTAIAGLQSGDALLIAGKGHETGQIV 463

Query: 476 TN 477
            +
Sbjct: 464 GD 465


>gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
 gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
          Length = 494

 Score =  332 bits (851), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 179/464 (38%), Positives = 267/464 (57%), Gaps = 3/464 (0%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D  + ++ L +     R+  +  ++ DSR ++ G++F A+ G+   G  FI  AI +GA 
Sbjct: 3   DHRKTLSDLGLTASGGRKADVTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERGAT 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AI+   A +         S+  +++ D+ R+ L+  A+   G  P  ++AVTGT+GK+SV
Sbjct: 63  AILTDPAGARLAADVPSASDVAVVLADDPRQTLAFAAALWSGGQPNTMIAVTGTNGKTSV 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           ++F +QI    G ++  +G T    ++      TTP PI L + L+  +S GVTH ++EA
Sbjct: 123 STFCRQIWVEMGYAAANLGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAMEA 182

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGLDQ RLDG++++A  FTN  +DH+D+H+T +AYF AKM LF  +L  +S A++  D
Sbjct: 183 SSHGLDQRRLDGVRIMAAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVVNLD 242

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLP 307
           D    EV + A++ G  V+ VG + +   L+ +    +   Q +    EGK +     L 
Sbjct: 243 DPKGPEVAEIAYDLGIDVIGVG-RSEHADLQLLAQWFDATGQDLRFDFEGKTYVKRLNLI 301

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G FQ  N L+AA L IA G D+  V + L  L  V GR E   T   G  ++VDYAHT +
Sbjct: 302 GGFQADNVLLAAALVIACGADADEVFDTLPHLTTVRGRMELAATRDNGAAVFVDYAHTPD 361

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++   L  +R    GR+I + G GGDRD  KRP+MG+ A+  AD+  VTDDNPRSEDP  
Sbjct: 362 AVATALSAMRPHVMGRLIAIIGAGGDRDATKRPLMGEAAMREADLVFVTDDNPRSEDPAV 421

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           IR  ++ G P   E G+R EAI   ++ L   D L++AGKGHET
Sbjct: 422 IRTAVMLGAPEATEVGDRAEAILRGVDALRPGDALLIAGKGHET 465


>gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
 gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
          Length = 483

 Score =  332 bits (851), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 192/460 (41%), Positives = 264/460 (57%), Gaps = 28/460 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V++DSR ++ G+ F A+ G+  DG  +   A A+GA  +V   A  +         +
Sbjct: 20  IAGVTADSREVRTGYAFFAVPGHAGDGLGYAADARARGASVVVAPRAAEV---------S 70

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV + R  L+  A+R Y + P  + AVTGTSGKSSV  F++QI    G  +  +G 
Sbjct: 71  LPLVVVPDVRASLAHAAARFYPRQPRIVAAVTGTSGKSSVVDFLRQIWIALGREAASLGT 130

Query: 150 TSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              I  S A    LTTP P+ L + L  L + GVTH+++EASS G+DQ RLDG++L  G+
Sbjct: 131 IGLIDKSGAHYGALTTPGPVALHQTLDELCAGGVTHLAMEASSLGIDQRRLDGVRLCVGA 190

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN  RDH+D+H+  + YF AKMRLF+ LL     A+I AD A ++ V       G  + 
Sbjct: 191 FTNFSRDHLDHHRDLEEYFAAKMRLFDTLLQTGQTAVIDADSAVAERVAAVCAARGLALF 250

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            VG +G+ I L  V       ++T+   G+ +D   PL G FQ+ NALV+AG+ IA G  
Sbjct: 251 DVGAKGRAIELLSVAPSALATRLTLRHAGETYDVDLPLAGGFQISNALVSAGMAIASGEA 310

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V   L  L   PGR E +G    G  ++VDYAH  ++L+ +L   R +  GR++VVF
Sbjct: 311 PGRVFAALASLRGAPGRLELIGQRD-GAPVFVDYAHKPDALDKVLATARELAKGRLVVVF 369

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-----------IHGIP 437
           G GGDRD+GKRP+MG+IA   ADI +VTDDNPRSE+P  IRA I           IH   
Sbjct: 370 GAGGDRDKGKRPLMGEIAARAADIVVVTDDNPRSEEPAMIRAAIVAAARAAGSAQIH--- 426

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
              E G+R  AI TAI  L   D L+VAGKGHE+  I+ +
Sbjct: 427 ---EIGDRRAAIETAISWLRDGDALIVAGKGHESGQIIGD 463


>gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
 gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
          Length = 503

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 183/457 (40%), Positives = 259/457 (56%), Gaps = 7/457 (1%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           RE  I  +S DSR ++ G +F A+ G K  G  FI  A+  GA AI+  +  +    +  
Sbjct: 23  REATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILTDAQGAQIAANEL 82

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             S   +++ ++ R  L+L AS  +G HPE ++AVTGT+GK+SV++F +QI     L++ 
Sbjct: 83  AESTAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFARQIWIEMNLAAV 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G T    ++    + TTP PI L + L++  S  +THV+VEASSHGLDQ RLDG+ L 
Sbjct: 143 NLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVAVEASSHGLDQRRLDGVVLS 202

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTN   DH+DYH+T +AYF+AKM LF  LLP++  A+I  DD    EV++ A N G 
Sbjct: 203 AAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDPKGPEVVQIAQNRGL 262

Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++VG +    + L         Q++    +         L G FQ  N L+A  L IA
Sbjct: 263 ETITVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKLIGGFQADNVLLATALVIA 322

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G D   V + L  L  V GR +   T   GG ++VDYAHT +++   L  +R    G++
Sbjct: 323 AGGDPEEVFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATALMAMRPHVMGKL 382

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PG 438
           I + G GGDRD GKRP+MG+ A   AD+  VTDDNPRSEDP  IRA ++ G         
Sbjct: 383 IAIVGAGGDRDTGKRPLMGQAAAQNADMVFVTDDNPRSEDPATIRAAVMVGALENAAGKS 442

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            IE G+R EAI   ++ L   D L++AGKGHE+  I+
Sbjct: 443 VIEVGDRAEAILRGVDALGPGDALLIAGKGHESGQII 479


>gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 539

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 194/444 (43%), Positives = 261/444 (58%), Gaps = 9/444 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +++DSR +  GW+F A+ G K DG  FI  A+ +GA AI+  +  +           
Sbjct: 75  ISGITADSRQVMPGWVFAALPGQKTDGRRFIADAVERGAAAILAPAGTAWPPGV----PP 130

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++     R+ L+L A+RL G  P  I A+TGT+GK+S A F++QI    G S+  +G 
Sbjct: 131 RPMIQDAEPRRLLALMAARLAGAQPHTIAAITGTNGKTSTADFLRQIWTLLGRSAASLGT 190

Query: 150 TSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              I+  F   + LTTP P+ LA+ L+ L+  G+ H ++EASSHGLDQ RLDG++L A +
Sbjct: 191 LGLIAEGFHPQDSLTTPDPVTLAQTLAMLARAGIQHTALEASSHGLDQFRLDGVRLSAAA 250

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKR-AHNAGCR 266
           FTNL RDH+DYH T+ AY  AK+RLF +LLP  +PAI     D  + E ++  A   G R
Sbjct: 251 FTNLTRDHLDYHGTEAAYRTAKLRLFADLLPAGAPAIASPTLDQITLEALRGIARRRGLR 310

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++  G     + L  +      Q +TI  EG       PLPG FQ  N + AA +  ++G
Sbjct: 311 LIIAGSPDSPLPLLAIEPHAGGQYLTIREEGTTHRINVPLPGRFQADNIITAATIAASLG 370

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
               + L  L +L  V GR E   T   G  IYVDYAHT ++LE +L  +R  TSG++ V
Sbjct: 371 KRGIVPL--LSRLTGVRGRMEQAATLPNGAAIYVDYAHTPDALERLLDALRPHTSGKLHV 428

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFG GGDRD GKRP+MG+ A   AD  IVTDDNPRSE+P KIRA I+   P   E G+R 
Sbjct: 429 VFGAGGDRDPGKRPLMGEAARTHADRLIVTDDNPRSENPAKIRAAILAACPDAEEIGDRA 488

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHE 470
           EAI  AI  L   DVL +AGKGHE
Sbjct: 489 EAIAHAIRSLQPGDVLAIAGKGHE 512


>gi|91977865|ref|YP_570524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684321|gb|ABE40623.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 490

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 215/484 (44%), Positives = 283/484 (58%), Gaps = 21/484 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   D P +  Q S  P    +  +  ++ DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLRDLFSDDAP-IDAQGS--PRGAADLDVGGLAVDSRAVKPGDLFFALAGAKTDGARFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                  A AI   +     D +       P + + N R+ L+L A+R Y + P  I AV
Sbjct: 58  -------AAAIAAGAVAVAGDHAPDGELAVPFVPLGNPRRALALAAARFYSRQPRTIAAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TGTSGK+SVA+F + I QR G ++  IG     T T S +     LTTP PI L ++L  
Sbjct: 111 TGTSGKTSVAAFTRHIWQRLGHAAASIGTIGLVTPTRSVYGS---LTTPDPIALHRSLDE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +
Sbjct: 168 IAGEGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRD 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTI 293
           L+     A+I AD   S +V+  A   G R+++VG  G   + I L +       Q++TI
Sbjct: 228 LVIDGGAAVISADHDCSAQVIDAARARGLRLITVGRNGDAGEGIRLIEASIDGFAQKLTI 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G+      PL GEFQ+ NALVAAGL I  G D A     L+ L   PGR +FVG   
Sbjct: 288 EHAGRRTAVHLPLVGEFQIENALVAAGLVIGAGGDPAAAFAALDHLEGAPGRLDFVG-ER 346

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA   AD  
Sbjct: 347 RGAPVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAGNADSI 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           IVTDDNPRSEDP  IRA I+   PG  E G+R EAIRTAI  L   D L++AGKGHET  
Sbjct: 407 IVTDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIRTAIAALAPGDALLIAGKGHETGQ 466

Query: 474 IVTN 477
           IV +
Sbjct: 467 IVRD 470


>gi|312114849|ref|YP_004012445.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219978|gb|ADP71346.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 455

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 203/433 (46%), Positives = 275/433 (63%), Gaps = 9/433 (2%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+ G K DG  +   A A GA A++     + +  S       PIL     R+ L+L
Sbjct: 2   LFAALSGTKADGMAYAKAAEAAGAVAVLAGETANAEGLS------LPILRAAEPRRALAL 55

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-- 162
            A+R Y   P+ I AVTGT+GK+SVA+F++QI   +G  +  +G    I++ A +  L  
Sbjct: 56  LAARFYRAQPDIIAAVTGTNGKTSVAAFLRQIWATAGHDAASLGTIGIITN-AGERPLSH 114

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TTP P+ L KAL+ L+++GVTH+++EASSHGLDQHRLDG++  AG+FTN+ RDH+DYH T
Sbjct: 115 TTPDPVALHKALADLANEGVTHLALEASSHGLDQHRLDGVRFSAGAFTNITRDHLDYHPT 174

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + YFNAKMRLF +LLP  +PAII AD  ++ +V+  A      V++VG +G  + LK V
Sbjct: 175 FEDYFNAKMRLFRDLLPSGAPAIIDADGDHADDVVGTARAKKLDVMTVGERGAALCLKGV 234

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +Q+++I   G+ F  L PL G FQV NALV+AGL + +G  +  V E LE L   
Sbjct: 235 ERDGFRQRLSIIYRGRLFTVLLPLAGAFQVSNALVSAGLALGLGSSAGGVFEALETLRGA 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR ++VG  S G  I+VDYAHT ++L   L+ +R   +GR+ VV GCGGDRD+GKRP M
Sbjct: 295 KGRLDYVGETSAGAPIFVDYAHTPDALVKALEALRPYVTGRLHVVLGCGGDRDRGKRPEM 354

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           G+ A   ADI  VTDDNPRSE+P  IRA I+   PG  E   R +AI  AI  L + D+L
Sbjct: 355 GRAATANADIVYVTDDNPRSEEPAAIRAAIMAAAPGATEIDGRADAIAIAIGNLERGDLL 414

Query: 463 VVAGKGHETVHIV 475
           +VAGKGHET  IV
Sbjct: 415 LVAGKGHETGQIV 427


>gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
 gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
          Length = 485

 Score =  329 bits (843), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 214/482 (44%), Positives = 284/482 (58%), Gaps = 22/482 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D        +       E  +  +++DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLRELFGDD--------AAMDAPGGELAVTGLAADSRAVKLGDLFFALAGTKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA AIV   A       AT R   P +   N R+ L+L A+R Y + P  I AV
Sbjct: 53  DAAIASGAVAIVGEHA------PATGR--VPFIATPNPRRALALAAARFYPRQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G  S  IG    ++ S      +TTP PI L + L  L+ 
Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVTPSRTVYGSVTTPDPIELHRELDQLAG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ+RLDG+++ A  FTNL RDH+DYH T   Y + K+RLF +L+ 
Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKV-CAIHN-KQQVTISV 295
            +  A+I  D   S  V++ A+    RV+ VG +  G    ++ V  AI +  Q+VT+  
Sbjct: 225 PDGIAVISTDHDCSHTVIEAANARKVRVMRVGRRSDGALAGIRLVEAAIEDFAQRVTLEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++     PL GEFQ+ NALV+AGL I  G D   V   LE L    GR E VG ++ G
Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGSDPDQVFAALEHLEGARGRLELVGEHN-G 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             ++VDYAH  ++L   L  +R     +++VVFG GGDRD GKRP+MG IA D AD+ IV
Sbjct: 344 APVFVDYAHKPDALAKALLALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA I+    G  E G+R EAIR AI  L   D L++AGKGHET  IV
Sbjct: 404 TDDNPRSEDPAAIRAAILAAARGACEIGDRAEAIRGAIAGLQPGDALLIAGKGHETGQIV 463

Query: 476 TN 477
            +
Sbjct: 464 GD 465


>gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
 gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
          Length = 498

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/464 (39%), Positives = 269/464 (57%), Gaps = 1/464 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +     RE +I  ++ DSR +  G +F A+ G++  G  FI  A+AQ A AI+  
Sbjct: 13  LSTLGLTAQGGREAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTD 72

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         ++  +++ ++ R+ L+  A+  +G+HP  ++AVTGT+GK+SV++F +
Sbjct: 73  AEGARLARDELAEADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTR 132

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++   R TTP PI L + L+  + QGVTHV++EASSHGL
Sbjct: 133 QIWYELGEPAVNLGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGL 192

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L AG FTN  +DH+DYH++ +AYF+AKM LF  +L  +  A++  DD    
Sbjct: 193 DQRRLDGMVLSAGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGP 252

Query: 255 EVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            V + A   G  V+ VG   +  + L         Q++    +G+       L G FQ  
Sbjct: 253 LVAQIAEERGQEVIGVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQAE 312

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL I  G D A V   L  L  V GR +   T   G  ++VDYAHT +++   +
Sbjct: 313 NVLLAAGLAIGSGSDPAEVFAALGHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAV 372

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GRI+ + G GGDRD+ KRP+MG+ A + AD  IVTDDNPRSEDP  IRAE++
Sbjct: 373 EALRPHVIGRIVAIVGAGGDRDRTKRPLMGQAAAEHADRVIVTDDNPRSEDPATIRAEVL 432

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G PG  E G+R EAI    +ML   D L++ GKGHET  IV +
Sbjct: 433 AGAPGATEVGDRAEAILRGADMLEPGDALLICGKGHETGQIVGD 476


>gi|304321491|ref|YP_003855134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
 gi|303300393|gb|ADM09992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
          Length = 480

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 196/482 (40%), Positives = 278/482 (57%), Gaps = 30/482 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DLI  D                + +I  +++DSR ++ G++F A+ G   DG  +I
Sbjct: 1   MRLSDLIPLD-------------GHLDAEITGLTADSRQVKPGFLFAALPGETTDGRRYI 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAIA GA AI+  +  +         +  P+L  DN R+ L++ A+R +   P+ I+ V
Sbjct: 48  DQAIAAGAAAILAPTGTT---------ATVPVLADDNPRQALAMLAARFHAGQPKCIVGV 98

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLS 178
           TGT+GK+SVA FV Q+    G S+  +G T   S+   D  L  TTP P+ L + +S ++
Sbjct: 99  TGTNGKTSVARFVAQLWSAFGHSAGTVG-TLGASAPGYDYALRHTTPDPVELHQVISTMA 157

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G TH+++E SSHGL QHR DG++     FTN+ +DH+DYH + +AYF AKMRL   LL
Sbjct: 158 AMGTTHLAMEVSSHGLAQHRADGVRFSHAGFTNITQDHLDYHPSFEAYFAAKMRLLTALL 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EG 297
           P+   A+I  D A ++  ++ A  AG RVL+VG +G+ + L           +T+SV EG
Sbjct: 218 PETGQAVITTDGAGAEGAIEAAQGAGRRVLTVGRRGETLKLLSCVPHQGGLALTVSVEEG 277

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G+FQ  NALVAAGL IA G +   V+E + KL   PGR +  G  S  G 
Sbjct: 278 PAQSVALSLIGDFQADNALVAAGLVIASGAEPEAVIEAMAKLSAAPGRMQPAGQKSCEGG 337

Query: 358 I---YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   +VDYAHT +++   L+ I+  +  GR++VV G GGDRD+ KRP+MG+ A   AD+ 
Sbjct: 338 MASAFVDYAHTPDAIATALRAIKPHVPGGRVVVVIGAGGDRDRTKRPLMGRAAAAGADLV 397

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           IVTDDNPRSEDP  IR+++  G PG    G R  AIR   E L   DVL+V GKGHE   
Sbjct: 398 IVTDDNPRSEDPAAIRSQVAEGAPGAQIIGGREAAIRAGAEALKAGDVLLVTGKGHEQTQ 457

Query: 474 IV 475
            +
Sbjct: 458 TI 459


>gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
 gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
          Length = 489

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 193/474 (40%), Positives = 271/474 (57%), Gaps = 16/474 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ +++DSR ++ G +F A+ G K DG  FI  A+  GA A++  +         T   
Sbjct: 22  EISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAAAVLAPADTQWP----TDVP 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+++  N R  L+L A+ L G  P++++A+TGT+GK+S A F++QI    G  +  IG
Sbjct: 78  ACPLVLASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTADFMRQIWALQGFKAAAIG 137

Query: 149 ------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                    T  SF     LTTP P+ LA  L+ L+  G  HV++EASSHGL+Q RLDG+
Sbjct: 138 TLGLTGAEETSISFPA---LTTPDPVALANGLAALTQAGFQHVALEASSHGLEQGRLDGL 194

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYS-KEVMKRA 260
            L A  FTNL RDH+DYH T +AY  AK++LF+ LLP+ + A   AD DA + + +   A
Sbjct: 195 HLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAANADMDAQTLQAICAIA 254

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R+  VG  G  + L    A+   Q++TI  +G+    L P+PG FQ  N L+A  
Sbjct: 255 ARRNLRLRLVGEHGTTLRLVAYNALPAGQELTIEHDGRTSTVLLPIPGRFQADNVLLAVA 314

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L      +   +L  L  L  V GR E       G   YVDYAHT ++L  +L ++R   
Sbjct: 315 LAAQDNAEITRILPLLPHLKGVRGRLERATVLPNGACAYVDYAHTPDALARLLASLRPHA 374

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            G++IVV G GGDRD GKRP+MG+ A+  ADIAI+TDDNPR+E+P  IRA+I  G P  +
Sbjct: 375 RGKLIVVLGAGGDRDSGKRPLMGQEAVKGADIAIITDDNPRTENPASIRADIKTGAPQAL 434

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           E  +R +AI  A+ ML   DVLVVAGKGHE   I+ N       D  ++R + G
Sbjct: 435 EIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGNTILPFD-DAAVLRTLAG 487


>gi|221638508|ref|YP_002524770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159289|gb|ACM00269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
          Length = 495

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 185/469 (39%), Positives = 265/469 (56%), Gaps = 3/469 (0%)

Query: 10  DFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           D    ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A G
Sbjct: 3   DRAATLSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AI+  +A +     A   S   ++V ++ R+ L+  A+  +G+ P  ++AVTGT+GK+
Sbjct: 63  ATAILTDAAGAALAREALAGSGAALVVAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SVA+F +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++
Sbjct: 123 SVATFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAM 182

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++ 
Sbjct: 183 EASSHGLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVN 242

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD    E+   A     RV+  G+     + L         Q +  S +G+      PL
Sbjct: 243 LDDPRGPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPL 302

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G FQ +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT 
Sbjct: 303 IGGFQAWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTP 362

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   LK +R    GRI+VVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP 
Sbjct: 363 DALATALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPA 422

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            IR  I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V
Sbjct: 423 AIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVV 471


>gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
 gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
          Length = 493

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/464 (38%), Positives = 264/464 (56%), Gaps = 7/464 (1%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV--SS 75
           L +     R+  I  ++ DSR ++ G++F A+ G    G  FI  A+ QGA AI+   + 
Sbjct: 10  LGLTAQAGRQANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYALRQGAGAILTDATG 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A   QDF +   S+  ++V ++ R+ L+  A+  +G  PE ++AVTGT+GK+SVA+F +Q
Sbjct: 70  ARLAQDFLSL--SDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGTNGKTSVATFTRQ 127

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I +R GL++  +G T    +++     TTP PI L + L+     GVTH ++EASSHGL 
Sbjct: 128 IWERMGLAAVNLGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVTHGAMEASSHGLA 187

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q RLDG+ L+A  FTN  +DH+DYH +   YF AK  LF  +LP++  A+I  DD    E
Sbjct: 188 QRRLDGVHLMAAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGVAVINIDDPRGAE 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVY 313
           +   A   G  +++VG +     L+ +    +     +  E +D        L G FQ  
Sbjct: 248 MAAIATERGQDLITVG-RAPGADLRLIAQRFDATGQVLRFEWEDEVNQLRLDLIGGFQAE 306

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL I  G D+  V E L  +  V GR +   T   G  ++VDYAHT +++   +
Sbjct: 307 NVLLAAGLVIGAGADAEQVFEVLPDMRTVRGRMQLAATRDNGAAVFVDYAHTPDAVATAI 366

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR+I + G GGDRD+ KRP+MG+ A   AD  IVTDDNPRSE+P  IRA ++
Sbjct: 367 KALRPHVMGRLIAIVGAGGDRDRAKRPLMGQAAAAHADRVIVTDDNPRSENPASIRAAVM 426

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G P   + G+R EAI   ++ L   D L++ GKGHET  IV +
Sbjct: 427 QGCPKATDVGDRAEAILRGVDALGPGDALLICGKGHETGQIVGD 470


>gi|77462651|ref|YP_352155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387069|gb|ABA78254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 495

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 184/469 (39%), Positives = 265/469 (56%), Gaps = 3/469 (0%)

Query: 10  DFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           D    ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A G
Sbjct: 3   DRAATLSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AI+  +A +     A   S   +++ ++ R+ L+  A+  +G+ P  ++AVTGT+GK+
Sbjct: 63  ATAILTDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SVA+F +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++
Sbjct: 123 SVATFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAM 182

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++ 
Sbjct: 183 EASSHGLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVN 242

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD    E+   A     RV+  G+     + L         Q +  S +G+      PL
Sbjct: 243 LDDPRGPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPL 302

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G FQ +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT 
Sbjct: 303 IGGFQAWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTP 362

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   LK +R    GRI+VVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP 
Sbjct: 363 DALATALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPA 422

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            IR  I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V
Sbjct: 423 AIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVV 471


>gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 493

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 180/471 (38%), Positives = 265/471 (56%), Gaps = 2/471 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL++      + +I  ++ DSR ++ G++F A+ G +  G  FI  A+  GA AI+  
Sbjct: 8   LSQLALTARGGADPEIAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++VV + R+ L+  A+  +G  P  ++AVTGT+GK+S+++FV+
Sbjct: 68  AEGARIAADELAASDAALVVVQDPRQTLAYTAALWFGAQPRTMVAVTGTNGKTSISTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    ++      TTP PI L + L+  +  GVTH ++EASSHGL
Sbjct: 128 QIWTELGHMAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  F+N  +DH+DYH T +AYF AK  LF+ +L ++  A+I  DD    
Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +   A   G  VL+VG     + L         Q +  +  GK F     L G FQ  N
Sbjct: 248 AIRDIAQARGQTVLTVGSGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G ++  V + L  L  V GR +   T S G  ++VDYAHT +++   L+
Sbjct: 308 VLLACGLVIASGDEAEHVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALQ 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MG+ A + ADI  VTDDNPRSEDP  IRA ++ 
Sbjct: 368 ALRPHVMGRLIAIVGAGGDRDSTKRPLMGRAAAENADIVFVTDDNPRSEDPAAIRAAVMA 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           G P   E  +R EAI   I+ L   D L++AGKGHET  IV  G++ +  D
Sbjct: 428 GAPDATEVADRAEAILRGIDALQPGDALLIAGKGHETGQIV--GDQVLPFD 476


>gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 495

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/469 (39%), Positives = 265/469 (56%), Gaps = 3/469 (0%)

Query: 10  DFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           D    ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A G
Sbjct: 3   DRAATLSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AI+  +A +     A   S   +++ ++ R+ L+  A+  +G+ P  ++AVTGT+GK+
Sbjct: 63  ATAILTDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SVA+F +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++
Sbjct: 123 SVATFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAM 182

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++ 
Sbjct: 183 EASSHGLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVN 242

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD    E+   A     RV+  G+     + L         Q +  S +G+      PL
Sbjct: 243 LDDPRGPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPL 302

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G FQ +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT 
Sbjct: 303 IGGFQAWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRQNGASVFVDYAHTP 362

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   LK +R    GRI+VVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP 
Sbjct: 363 DALATALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPA 422

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            IR  I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V
Sbjct: 423 AIRRAILGACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVV 471


>gi|126461544|ref|YP_001042658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126103208|gb|ABN75886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 495

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/469 (39%), Positives = 265/469 (56%), Gaps = 3/469 (0%)

Query: 10  DFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           D    ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A G
Sbjct: 3   DRAATLSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AI+  +A +     A   S   +++ ++ R+ L+  A+  +G+ P  ++AVTGT+GK+
Sbjct: 63  ATAILTDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SVA+F +QI    G ++  IG T    +FA  +  TTP PI L + LS  +  GVTH ++
Sbjct: 123 SVATFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLSEAAEAGVTHAAM 182

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++ 
Sbjct: 183 EASSHGLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVN 242

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD    E+   A     RV+  G+     + L         Q +  S +G+      PL
Sbjct: 243 LDDPRGPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPL 302

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G FQ +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT 
Sbjct: 303 IGGFQAWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTP 362

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   LK +R    GRI+VVFG GGDRD+GKRP+MG+ A + AD+  VTDDNPR+EDP 
Sbjct: 363 DALATALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAAEHADVLYVTDDNPRTEDPA 422

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            IR  I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V
Sbjct: 423 AIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVV 471


>gi|148556853|ref|YP_001264435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
 gi|148502043|gb|ABQ70297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
          Length = 487

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 195/496 (39%), Positives = 282/496 (56%), Gaps = 17/496 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+   FP              + +I   + D R +  G +F A  G++ +G  FI
Sbjct: 1   MRLTDLL-AGFPATTGA------DAGDARITGFAIDHRKVAPGTVFGAFRGSRFNGEDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+A GA AIV +   ++     +       +V D  R+  +  A+R +   P+  +AV
Sbjct: 54  AQAVADGAAAIVSAPGVAV----GSAIGGAVHIVDDEPRRLFARLAARFFAPFPDTTVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ + +G  +  IG     ++  Q    LTTP  +     ++ L  
Sbjct: 110 TGTNGKTSTVELTRQLWRMAGFHAASIGTLGVTTADEQVSTGLTTPDIVTFLSNMAGLRK 169

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH T +AYF AK+RLF E++ 
Sbjct: 170 EGVTHAAFEASSHGLSQYRTEGLPVRAAAFTNLSRDHLDYHGTMEAYFAAKLRLFTEVVD 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  A+++ADD  S EV+      G R+LSVG  G+ I L +       Q + + +EGK 
Sbjct: 230 QDGAAVVWADDPRSVEVIAAVRARGVRLLSVGAAGETIRLVERTPTALGQTLKLEIEGKA 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PL G +Q  NALVAAGL +A G +  L L +L+++  V GR E    +  G  IY
Sbjct: 290 REVKLPLIGAYQAANALVAAGLVVATGGEIGLTLANLQRVAPVRGRLERAAISRTGAPIY 349

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE  ++ +R  T  R+I VFG GGDRD GKRP+MG+++  L+D  IVTDDN
Sbjct: 350 VDYAHTPDGLEAAIEALRPHTEARLITVFGAGGDRDTGKRPLMGEVSARLSDRTIVTDDN 409

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSEDP  IR +++ G  G IE G R EAI  AI      D++++AGKGHE   IV  G+
Sbjct: 410 PRSEDPAAIRRDVMAGATGAIEIGGRREAIAAAIAEAQAGDIVLIAGKGHEQGQIVGAGD 469

Query: 480 KKMSV----DCDIIRE 491
            +M V    D  + RE
Sbjct: 470 -QMRVLPFDDVTVARE 484


>gi|170738610|ref|YP_001767265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
 gi|168192884|gb|ACA14831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
          Length = 488

 Score =  322 bits (826), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 203/471 (43%), Positives = 278/471 (59%), Gaps = 17/471 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           FPE     S  P       +  +++DSR +  G +FVA+ G + DG LF  QA A GA A
Sbjct: 11  FPEAAGAASALP-------VAALTADSRRVGPGAVFVAVPGTRADGRLFAAQAAAAGAVA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V           A +      L V + R+ L+L A+RL+   P  ++AVTGTSGKSSVA
Sbjct: 64  MVAEGPRP-----ADLPQAVAYLSVPDARRALALAAARLHPGQPATVVAVTGTSGKSSVA 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            FV+QI  R G  S  +G    ++   A    LTTP P+ L + L  L+  G+T +++EA
Sbjct: 119 DFVRQILARLGRRSASLGTLGVVTGEGAAYGALTTPDPVTLHETLDRLARDGITDLAMEA 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHG++Q RLDG++L A +FTNLG DH+DYH+T +AY  AK+RLFE+LLP+ + AI+ AD
Sbjct: 179 SSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHRTVEAYLAAKLRLFEDLLPEGATAIVNAD 238

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              +   +         +++ G  G+ + L  V      Q++T++ +G+      PL G 
Sbjct: 239 GPMADRAVAAIRARSLPLVTTGRAGETLRLDAVETRGFAQRLTLAAQGRALTVDLPLVGS 298

Query: 310 FQVYNALVAAGLCIAIGIDSA---LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           +QV NALVAA L +A          V+  L  L  VPGR E V T+ RG    VDYAH  
Sbjct: 299 YQVENALVAAALVLATPAGRGRLEAVIGALGHLAGVPGRLERVATH-RGALCVVDYAHKP 357

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +L  +L+ +R   +GR++ V GCGGDRD+ KRP+MG+IA+  AD  IVTDDNPRSE+P 
Sbjct: 358 EALAGVLQALRPFATGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVTDDNPRSEEPA 417

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            IRAEI+   PG  E G+R EAIR A+  L   DVLVVAGKGHET  I+ +
Sbjct: 418 AIRAEILAAAPGAEEIGDRAEAIRAAVRDLAPGDVLVVAGKGHETGQIIGD 468


>gi|259416449|ref|ZP_05740369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
 gi|259347888|gb|EEW59665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
          Length = 494

 Score =  322 bits (825), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 177/457 (38%), Positives = 262/457 (57%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      + +I  ++ DSR +Q G++F A+ G++  G  F+ Q + QGA AI+  
Sbjct: 9   LSQLGLTARAGMDPQITGLAVDSREVQQGFVFAALPGSRVHGAKFVDQVLDQGAVAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +     A  R+   ++V ++ R+ LS  A+  +G  P  + AVTGT+GK+SV++F++
Sbjct: 69  TAGAEIAGEAIARAGAALVVAEDPRQALSGAAALWFGGQPPVMAAVTGTNGKTSVSTFLR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 129 MIWTELGHQAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +L ++  A+I   D    
Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   G  +++VG     I L  +      Q +  +   + F     L G FQ  N
Sbjct: 249 KMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVAAGL IA G D   V + L  L  V GR E   T   G  ++VDYAHT +++   +K
Sbjct: 309 VLVAAGLAIASGEDPVQVFDTLPHLSTVRGRMELAATRENGATVFVDYAHTPDAIATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD  IVTDDNPRSEDP  IRA ++ 
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGQAAHENADTVIVTDDNPRSEDPAAIRAAVMG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G P  +  G+R EAI   ++ML   D L++ GKGHE+
Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEPGDALLICGKGHES 465


>gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 491

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 191/472 (40%), Positives = 264/472 (55%), Gaps = 14/472 (2%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +++DSR ++   IF AI GN+ DG  FI QA+ QGA AI+     S  D  A +R 
Sbjct: 22  EVSGITADSRQVRPRMIFAAIAGNRADGRAFITQALQQGACAII-----STPDACAAVRQ 76

Query: 89  ---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +   +  D+ R  LS+ A+ L    P +++AVTGT+GK+S   FV+QI Q  G ++ 
Sbjct: 77  AGHDIACIATDDPRHALSVMAAALMPAMPGHVVAVTGTNGKTSTVEFVRQIWQHQGHAAA 136

Query: 146 QIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            IG    IS          LTTP  + +A  L  L   GV  +++EASSHGL Q RLDG+
Sbjct: 137 SIGTLGIISPTVPALSGPSLTTPDGVTMALTLGTLHEHGVDDIAIEASSHGLAQRRLDGV 196

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKR-A 260
            L A  F+NL RDH+DYH    +Y  AK+RLF+ LLP    A+  AD +  + E ++  A
Sbjct: 197 PLAAAGFSNLTRDHLDYHGDMDSYRAAKLRLFDTLLPPGGLAVANADMEGATLEALRAIA 256

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              G  +  VG  G  I L +V    + Q + +   G   +    LPG +QV N L+AAG
Sbjct: 257 VKRGLDLRLVGESGDAIRLLRVTPRPDGQVLDVECNGTRHEVATRLPGRYQVDNMLLAAG 316

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L  +     +  +  L  L  V GR E   T   G  +YVDYAHT ++LE +L ++R   
Sbjct: 317 LAASSRDMMSAAINCLPALVGVRGRMEHAVTLPNGAAVYVDYAHTPDALERLLLSLRPHA 376

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           SGR++ VFG GGDRD+GKRP+MG +A  LAD+AIVTDDNPR+ED   IR E++ G P   
Sbjct: 377 SGRLVAVFGAGGDRDRGKRPLMGAVAGRLADMAIVTDDNPRTEDAAAIRREVMAGAPDAS 436

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + G R +AI   +  L   DV+VVAGKGHE    V         D  +IRE+
Sbjct: 437 DIGGRRQAIAEGLSRLKAGDVMVVAGKGHEQGQTVGTTVLPFD-DVSVIREL 487


>gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
 gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
          Length = 498

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 256/451 (56%), Gaps = 6/451 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS---AYSLQDFSATI 86
           I  +  DSR I++G +FVA+ G+K  G  F+  A+   A A++       ++ + F+   
Sbjct: 28  ITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVLTDEDGFNFAKKIFT--- 84

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + + PI+V ++ R  LS   +R +G  P  ++AVTGT+GK+SVA+F +QI +  G  +  
Sbjct: 85  KIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANFTRQIWECLGKKAVN 144

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           IG      + + +   TTP P  L K L  + + GVTH S+EASSHGLDQ RLDG+ L A
Sbjct: 145 IGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEASSHGLDQKRLDGVYLTA 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTN   DH+DYH+T  AYFN+K+ LFE +L  E   +I  DD     + + A   G  
Sbjct: 205 AAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMDDPKGLYIYEVAKLRGQD 264

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +++VG     + LK        QQ+  S   +       L G FQ  N L AA L IA G
Sbjct: 265 IITVGKNNCDLTLKNCTFDATGQQILFSWRDEIKSVRLDLIGYFQAMNILQAAALVIACG 324

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                V + L +L  V GR +     S G  ++VDYAHT +++E  LK +R    GR+++
Sbjct: 325 EQPNDVFDTLSELRTVSGRMQLAAKRSNGASVFVDYAHTPDAVETALKAMRPHVMGRLLI 384

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           + G GGDRD+ KR ++G+ A   AD+  VTDDNPRSEDP+ IR  I+ G P  IE G+R 
Sbjct: 385 IVGAGGDRDKSKRELIGEAAQKYADVVFVTDDNPRSEDPDSIRKSILLGCPDAIEIGDRA 444

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            AI T ++ L   D L++AGKGHET  I+ N
Sbjct: 445 RAILTGVDALKPGDALLIAGKGHETGQIIGN 475


>gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
 gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
          Length = 499

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 184/449 (40%), Positives = 263/449 (58%), Gaps = 14/449 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++DSR ++ G++F A+ G K DG  FI  A+A+GA A++      L   S      
Sbjct: 30  IAGLTADSRAVRPGFVFAALPGVKADGRAFIADALAKGAVAVLAPEGTELPAGS------ 83

Query: 90  TPILVVDNTRK--FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           T +L+ D   +  F  + A+   G+ PE ++AVTGT+GK+S   F  QI  R GL +  +
Sbjct: 84  TALLLTDPQPRLAFARMAAAFHGGRQPETVVAVTGTNGKTSTVQFAAQIWARMGLPAGSL 143

Query: 148 GPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +         +TTP P+ L + L+     G+ H+++EASSHGL+Q RLDG+ + A
Sbjct: 144 GTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAKDAGIDHLAMEASSHGLEQFRLDGVAIKA 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL  DH+DYH T +AY +AK  LF+ +LP    A++ AD              G R
Sbjct: 204 AGFTNLTLDHLDYHGTMEAYRDAKALLFQRVLPAGCIAVLNADSDDFHFFATICDERGQR 263

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VLS G  G  + +  V  + + Q+++++V G+D     PL G FQ +N L A GL I  G
Sbjct: 264 VLSYGLAGAELRVTGVEPLAHGQRLSLTVLGRDVTVDLPLAGRFQAWNVLCALGLVIGSG 323

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D+   L  L  L  VPGR + V T+  G  +YVD+AHT ++LE +L  +R+  +  ++ 
Sbjct: 324 GDATRALATLPALEGVPGRLQHVATHPNGATVYVDFAHTPDALETVLLALRSHAARDLVT 383

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-----E 441
           VFGCGGDRD+ KRP+MG +A  LAD AIVTDDNPR+EDP  +R+E++ G  G +     E
Sbjct: 384 VFGCGGDRDRTKRPVMGALAARLADRAIVTDDNPRTEDPAFVRSEVLAGATGELAGRLEE 443

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            G+R EAIRTA+  L   DVLV+AGKGHE
Sbjct: 444 IGDRAEAIRTAVRRLQPGDVLVIAGKGHE 472


>gi|92116830|ref|YP_576559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
 gi|91799724|gb|ABE62099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
          Length = 485

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 202/482 (41%), Positives = 279/482 (57%), Gaps = 22/482 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D        +    +  E  +  ++ DSR ++ G +F A+ G K DG  F 
Sbjct: 1   MKLRELFGDD--------AAMDARTGELAVTGLAVDSREVKPGDLFFALAGTKTDGARF- 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                   +A + + A ++    A   +  P +   N R+ L+L A++ Y + P  I AV
Sbjct: 52  -------IDAAIAAGAVAVVGDHAPAGACVPSVATSNPRRALALAAAKFYPRQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G  S  IG    ++ S A    +TTP PI L + L  L  
Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVAPSRAVYGSVTTPDPISLHRELDQLVG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ+RLDG+++ A  FTNL RDH+DYH T   Y + K+RLF +L+ 
Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISV 295
            +  A+I AD   S  V++ A     R++ VG +G   H    L         Q+VT+  
Sbjct: 225 PDGVAVISADHDCSGTVIEAASARNVRIMRVGRRGDGTHSGIRLADAVIEGFAQRVTLEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++     PL GEFQ+ NALV+AGL I  G D+  V   LE L    GR E VG  + G
Sbjct: 285 AGRERIIRLPLVGEFQIENALVSAGLVIGTGGDADQVFAALEHLEGAKGRLELVGERN-G 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             ++VDYAH  ++L   L+ +R   S +++VVFG GGDRD GKRP+MG++A   AD+ IV
Sbjct: 344 APVFVDYAHKPDALAKALQALRPYASRKLVVVFGAGGDRDAGKRPLMGEVAAANADVVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSE+P  IRA I+    G  E G+R EAIRTAI  L   D L++AGKGHET  IV
Sbjct: 404 TDDNPRSENPAAIRAAILAAATGAREIGDRAEAIRTAIVGLQPGDALLIAGKGHETGQIV 463

Query: 476 TN 477
            +
Sbjct: 464 GD 465


>gi|126741290|ref|ZP_01756968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717608|gb|EBA14332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
          Length = 499

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/467 (39%), Positives = 270/467 (57%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +D    +++L +      +  I+ +S DSR    G +F A+ G++  G  FIP A+ +GA
Sbjct: 8   QDLSRPLSELGLTARGGADPVIHSISVDSREALEGGLFAALPGSQVHGAKFIPAALERGA 67

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            AI+  +  +         S+  +++V++ R+ L+  A+  +G  PE ++AVTGT+GK+S
Sbjct: 68  TAILTDAKGAEIAAQPLSESHAAVVIVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTS 127

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           VASFV+QI    G  +  +G T    +++     TTP PI L +AL+  ++ GVTH ++E
Sbjct: 128 VASFVRQIWCELGHQAVNLGTTGVEGAWSYPLAHTTPEPITLHRALARAAAAGVTHAAME 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGLDQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +LP+E  A+I  
Sbjct: 188 ASSHGLDQGRLDGVQLAAAGFTNFTQDHLDYHKTFEAYFAAKAGLFRRVLPEEGVAVINM 247

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +D    E+   A   G  VL+VG     + L  +      Q +  +   + F +   L G
Sbjct: 248 NDPRGAEMRAIAAARGQEVLTVGRGLGDLSLSGLRYDGTGQDLRFAWHDRPFQYRLNLIG 307

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  N L+A GL IA G D   V   L  L  V GR E   T   G  ++VDYAHT ++
Sbjct: 308 GFQAENVLLACGLAIASGEDPEAVFATLPHLTTVRGRMEHAATRENGASVFVDYAHTPDA 367

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +   +K +R    GR++ + G GGDRD GKRP+MG+ A + AD+ IVTDDNPR+EDP  I
Sbjct: 368 VATAIKALRPHVLGRLLAIVGAGGDRDAGKRPLMGQAAAENADLVIVTDDNPRTEDPAAI 427

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RA +  G P  +E G+R EAI   +++L   D L++ GKGHE+  IV
Sbjct: 428 RAAVKGGAPEALEVGDRAEAILRGVDLLGPGDSLLICGKGHESGQIV 474


>gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
 gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
          Length = 494

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 186/462 (40%), Positives = 268/462 (58%), Gaps = 2/462 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      +  I  ++ DSR +  G +F A+ G++  G  F P A+  GA AI+  
Sbjct: 9   LSQLGLTARGGVDPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +A + Q  +  +R +T  ++VV++ R+ L+  ++  +G  PE ++AVTGT+GK+SVASFV
Sbjct: 69  AAGA-QIVAELLRDSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFV 127

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +QI    G  +  +G T    +++     TTP P+ L  AL+  ++ GVTH ++EASSHG
Sbjct: 128 RQIWIELGHKAVNLGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHG 187

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           LDQ RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP++  A+I  DD   
Sbjct: 188 LDQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRG 247

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            E+   A   G  V+SVG     + L       + Q +  +   K +     L G FQ  
Sbjct: 248 PEMRAIAAARGQEVISVGRGAGDLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQAE 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A GL IA G D   V E L  L  V GR +   T   G  ++VDYAHT +++   +
Sbjct: 308 NILLACGLVIASGEDPQAVFETLPHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAI 367

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA + 
Sbjct: 368 KALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQENADLVIVTDDNPRSEDPAVIRAAVK 427

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            G PG +E G+R EAI   ++ L   D L++ GKGHET  IV
Sbjct: 428 GGAPGALEVGDRAEAILRGVDALGAGDALLICGKGHETGQIV 469


>gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 485

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 209/481 (43%), Positives = 281/481 (58%), Gaps = 20/481 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL   D        ++   +    +I  ++ DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MRLRDLFSDD--------TVMTTEAAATQITGLAVDSRAVKPGELFFALAGAKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                  A+AI   +     D   T      ++ VDN R+ L+L AS+ Y + P  I AV
Sbjct: 53  -------AQAIAAGAVAVAGDHLPTDEQGVALVRVDNPRRALALAASKFYPRQPATIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR GL+S  IG    I+   +    LTTP PI L + +  ++S
Sbjct: 106 TGTSGKTSVAAFTRQIWQRQGLASASIGTIGLIAPQRSVYGSLTTPDPIALHRMVDEIAS 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + VTH+++EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T   Y  AK+RLF +L+ 
Sbjct: 166 EDVTHLALEASSHGLDQYRLDGVRIAAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRDLVA 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVE 296
               A+I AD   S EV+  A     R+++VG  G     I L+        Q++ +  +
Sbjct: 226 PSGAAVISADHDCSAEVVAAARARKLRLITVGRNGDPGAGIKLRSASIDGFAQRLILEHQ 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+  + L PL GEFQ+ NALVAAGL I  G D+  V E L +L    GR E VG  + G 
Sbjct: 286 GRMQNLLLPLVGEFQIENALVAAGLAIGTGSDADSVFEALTQLEGAKGRLELVGERN-GA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I+VDYAH  ++L   L+ +R     ++IVVFG GGDRD GKRP+MG IA   AD  IVT
Sbjct: 345 PIFVDYAHKPDALAKALQALRPYAKRQLIVVFGAGGDRDAGKRPLMGAIAAQQADRVIVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSE+   IRA I+    G  E G+R EAIR AI  L   D L++AGKGHET  IV 
Sbjct: 405 DDNPRSENAAAIRAAILAAAMGADEIGDRAEAIRAAIAALQPGDALLIAGKGHETGQIVG 464

Query: 477 N 477
           +
Sbjct: 465 D 465


>gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 486

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 187/448 (41%), Positives = 260/448 (58%), Gaps = 15/448 (3%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G++F A  G K +G  FI +AIA GA AIV      ++            LV 
Sbjct: 32  DSRKVEKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKIE--------GAVHLVA 83

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N R   +  A+R Y   P  + AVTGT+GK+SVA   +Q    +G  +  IG    I++
Sbjct: 84  ENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQFWMIAGHKAASIGTLGVITA 143

Query: 156 FAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
              +N     +TTP  +      S L+   ++HV  EASSHGLDQ+R DG K+IAG+FT+
Sbjct: 144 ---ENSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGAKVIAGAFTS 200

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             RDH+DYH T + Y  AK+RLF+E +  +  A+++ADD  +K V+      G +++ +G
Sbjct: 201 FSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAAKTVIAHVQKRGLKLIDIG 260

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            + + I L    A    Q +T+S++G+ +    PL G +Q+ NALVAAGL +A G D   
Sbjct: 261 EKAEAIRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGLVLATGGDIKQ 320

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
            +  L  L  V GR E    +  G  +YVDYAHT + L   ++ +R  T GR+ VVFG G
Sbjct: 321 TMAALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIEALRPHTEGRLWVVFGAG 380

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           GDRD+GKRP MGKIA +LAD  IVTDDNPR ED   IR EI+ G P   E G R EAI +
Sbjct: 381 GDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEILVGAPLAEEIGGRKEAIFS 440

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           AI+   K D++++AGKGHE   I+  GE
Sbjct: 441 AIKRAEKGDIVLIAGKGHEQGQIIGRGE 468


>gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
          Length = 479

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 196/461 (42%), Positives = 270/461 (58%), Gaps = 8/461 (1%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR ++ GW+F A+ G+K DG  +I  A+ +GA A++ +      D  A I    P+
Sbjct: 16  MTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLTTP-----DSEARIGGRVPL 70

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           ++  + R+ L+  A+R Y   PE ++AVTGT+GK+SVA F +QI   +G  S  +G    
Sbjct: 71  VMDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIWALTGQRSASLGTLGL 130

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +    +   LTTP PI L   L  L+ +GVTH ++EASSHGL Q RLDG+++ A +FTN
Sbjct: 131 MVDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQSRLDGVRIKAAAFTN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH +  AY  AK+ LFE ++     A++  D A  +     A   G R+LS G
Sbjct: 191 LTRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSFASAAGRRGHRILSYG 250

Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            + G  + L    A  + Q + + V G+      PL G+FQ +NAL A GL IA G    
Sbjct: 251 RRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNALAALGLAIATGTPDD 310

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
                L +L  V GR E V   + G  IYVDYAHT ++LE +L  IR  T+G++  VFGC
Sbjct: 311 QATAALSRLAGVRGRMERVAVLANGAAIYVDYAHTPDALETVLNAIRPHTTGKLWCVFGC 370

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGDRD GKRP+MG +   LAD  IVTDDNPRSEDP  IRA  +   PG  E G+R EAIR
Sbjct: 371 GGDRDPGKRPMMGCMVGKLADKPIVTDDNPRSEDPATIRAAALAACPGGEEIGDRAEAIR 430

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +A+  L   DVL++AGKGHE    +  GE +   D  + RE
Sbjct: 431 SAVSRLGPGDVLMIAGKGHEQGQEI-KGEIRPFDDATVARE 470


>gi|209963951|ref|YP_002296866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
 gi|209957417|gb|ACI98053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
          Length = 491

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 198/452 (43%), Positives = 263/452 (58%), Gaps = 7/452 (1%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  I  +++DSR I  G +F A+ G + DG  FI QA+A GA A++      L      
Sbjct: 23  RDPPITALTADSRKIVPGTLFAALPGTRHDGRDFIAQAVAAGASAVLAPKGTVLPPGCEH 82

Query: 86  IRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +      L+ D N R+ L+L A+  YG  P+ I AVTGT+GK+S A F +QI    G  S
Sbjct: 83  V-----ALIEDLNPRRRLALLAAAFYGAQPQRIAAVTGTNGKTSTAQFTRQIWSGLGHRS 137

Query: 145 FQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G    ++  F     LTTP P+ L + L+ L+  GVTH+++EASSHGLDQ RLDG+ 
Sbjct: 138 GAMGTLGLVADGFPNIETLTTPDPVELHRLLAELARGGVTHLAMEASSHGLDQFRLDGVL 197

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTNL RDH+DYH+T +AYF AK  LFE ++P+ + A++ AD    + +     + 
Sbjct: 198 VTCAGFTNLTRDHLDYHRTMEAYFQAKATLFERVMPQGAVAVLNADTPQFEALAALCRSR 257

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+  G +G+ + L     + + QQV I V G       PL G FQ++NAL A GL I
Sbjct: 258 KQTVIGYGERGRELALHSARPLPHGQQVEIEVFGTRHSLELPLVGNFQLWNALCALGLVI 317

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G D A     L +L  V GR + V     G  +YVDYAHT + LE +LK +R  T GR
Sbjct: 318 GSGEDPAAATAQLARLEGVRGRLDLVARLKNGAAVYVDYAHTPDGLETVLKALRPHTVGR 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           ++ VFG GGDRD GKRP+MG++   LAD AIVTDDNPRSE P  IRA I+   P   E G
Sbjct: 378 LVAVFGAGGDRDPGKRPLMGEVVARLADRAIVTDDNPRSEVPAVIRAAILAACPDATEIG 437

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +R EAI  AI  L + DVLVV GKGHE   IV
Sbjct: 438 DRAEAIEAAIAGLEQGDVLVVCGKGHEQGQIV 469


>gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
 gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
          Length = 497

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/469 (38%), Positives = 265/469 (56%), Gaps = 11/469 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L +      +  +  +S DSR  + G +F A+ G    G  FI  A+ +GA A++  
Sbjct: 11  LTELGLTAQGGAQALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGAAAVLTD 70

Query: 75  S-----AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           +     A  L D +A       ++V ++ R+ LS  A+  YG  PE ++AVTGT+GK+SV
Sbjct: 71  AEGAALARDLLDGAAVA-----LVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTSV 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           ASF +QI    G  +  +G T    ++      TTP PI L + L+   + GVTH ++EA
Sbjct: 126 ASFTRQIWAELGFEAVNLGTTGVEGAYQVPLAHTTPEPITLHRVLAECQAAGVTHAAMEA 185

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL Q RLDG++L A  FTN  +DH+DYH +   YF+AK  LF  +LP++  A+I  D
Sbjct: 186 SSHGLAQRRLDGVQLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINID 245

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPG 308
           D    E+ + A + G  +L VG + +   + +        Q +    EG+ +    PL G
Sbjct: 246 DPRGAEMAEIARHRGQGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLIG 305

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  N L+AAGL IA G D + V + L ++  V GR E   T   G  ++VDYAHT ++
Sbjct: 306 GFQGENLLLAAGLAIATGADPSRVFDTLPQMRTVRGRMELAATRENGAAVFVDYAHTPDA 365

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +   ++ +R    GR+I + G GGDRD GKRP+MG+ A + AD  IVTDDNPRSEDP  I
Sbjct: 366 VGTAIRALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAGEHADQVIVTDDNPRSEDPALI 425

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RA ++ G P  +E G+R EAI   ++ML   D L++ GKGHET   V +
Sbjct: 426 RAAVLEGCPEALEMGDRAEAILRGVDMLGPGDALLILGKGHETGQTVGD 474


>gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 1058

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 185/445 (41%), Positives = 259/445 (58%), Gaps = 9/445 (2%)

Query: 36   DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
            DSR ++ G++F A  G K +G  FI +AIA GA AIV      ++            LV 
Sbjct: 604  DSRKVEKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKIE--------GAVHLVA 655

Query: 96   DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +N R   +  A+R Y   P  + AVTGT+GK+SVA   +Q+   +G  +  IG    I++
Sbjct: 656  ENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTIAGHKAASIGTLGVITA 715

Query: 156  -FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
              +    +TTP  +      S L+   ++HV  EASSHGLDQ+R DG K+IAG+FT+  R
Sbjct: 716  KNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGAKVIAGAFTSFSR 775

Query: 215  DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            DH+DYH T + Y  AK+RLF+E +  +  A+++ADD  +  V+      G +++ +G + 
Sbjct: 776  DHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAATTVIAHVQKRGLKLIDIGEKA 835

Query: 275  KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + I L    A    Q +T+S++G+ +    PL G +Q+ NALVAAGL +A G D    + 
Sbjct: 836  EAIRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGLVLATGGDIKQTMA 895

Query: 335  HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
             L  L  V GR E    +  G  +YVDYAHT + L   ++ +R  T GR+ VVFG GGDR
Sbjct: 896  ALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIEALRPHTEGRLWVVFGAGGDR 955

Query: 395  DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            D+GKRP MGKIA +LAD  IVTDDNPR ED   IR EI+ G P   E G R EAI +AI+
Sbjct: 956  DKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEILVGSPLAEEIGGRKEAIFSAIK 1015

Query: 455  MLNKQDVLVVAGKGHETVHIVTNGE 479
               K D++++AGKGHE   I+  GE
Sbjct: 1016 RAEKGDIVLIAGKGHEQGQIIGRGE 1040


>gi|148259079|ref|YP_001233206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|326402230|ref|YP_004282311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
 gi|146400760|gb|ABQ29287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|325049091|dbj|BAJ79429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
          Length = 481

 Score =  316 bits (809), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 200/477 (41%), Positives = 272/477 (57%), Gaps = 13/477 (2%)

Query: 22  PMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           P  W    E   + +++DSR ++ G IF A+ G + DG  FI QA+AQGA A++  S   
Sbjct: 10  PPGWILPPETVFSGITADSRAVRKGMIFAALPGARADGRDFIAQAVAQGAAAVLAPSGTR 69

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                       P++     R+ L+  A+ L G  PE IL VTGT+GK+S   F++Q+  
Sbjct: 70  WPPGV----PPRPLIEDPEPRRRLAEIAATLAGPLPETILGVTGTNGKTSTVDFIRQMAV 125

Query: 139 RSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            SG  +  +G    I+  FA    LTTP P+ L+  L+ L + G+  V++EASSHGLDQ 
Sbjct: 126 ASGRPAASLGTLGLIAPGFAPGASLTTPDPVTLSDILAALRAAGIGTVALEASSHGLDQF 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RL G++L AG F+NL RDH+DYH    +Y  AK+RLF++LL   +PA+  AD        
Sbjct: 186 RLHGLRLAAGGFSNLTRDHLDYHGDMASYRRAKLRLFQDLLLPGAPAVAMADLEPDTLAA 245

Query: 258 KR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            R  A      + +VG  G    L+ + A  + Q +TI+  G   +   PLPG FQV NA
Sbjct: 246 LRDIAQARRLDLATVGAGGDLFDLRGIIATPSSQVLTIACGGVSREIELPLPGRFQVDNA 305

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+AAGL  A G+   L  + L  L  V GR E       G   YVDYAHT ++LE +L  
Sbjct: 306 LLAAGLARAAGVSDPL--DRLPGLAPVRGRLERAAVLPNGAAAYVDYAHTPDALERLLMA 363

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R   +GR+++VFG GGDRD+GKR +MG +A  LAD+AIVTDDNPRSEDP  IRA I+  
Sbjct: 364 LRPHAAGRLVLVFGAGGDRDRGKRKLMGDVAARLADVAIVTDDNPRSEDPASIRAAILAA 423

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            PG  E G+R  AI   ++ L   DVL VAGKGHE+  IV +       D  +IRE+
Sbjct: 424 CPGAREIGDRRAAIAAGLDALRAGDVLAVAGKGHESGQIVGDAVLPFD-DAAVIREL 479


>gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
 gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
          Length = 500

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 189/481 (39%), Positives = 270/481 (56%), Gaps = 34/481 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R +  G +F A  G   +   FIP AI  GA AIV  S   ++  +  I S  P    
Sbjct: 28  DHRKVAPGTVFGAFRGANFNAEDFIPAAIEAGAVAIVARSEAKVEG-ALHIASEEP---- 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------P 149
              R+  +  A+  +   PE I+AVTGT+GK+S A   +QI +  G  +  IG      P
Sbjct: 83  ---RRDFAQLAAGFFTPAPETIVAVTGTNGKTSTAEMTRQIWRMCGERAASIGTLGVTTP 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             ++S+      LTTP  +     +S L+ +GVTHV+ EASSHGL Q+R +G+++ AG+F
Sbjct: 140 DGSVSTG-----LTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGLRVKAGAF 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNAGCR 266
           TN  RDH+DYH+T  AYF AKMRLF+E++ ++  AII+    +  +++  ++ A +    
Sbjct: 195 TNFSRDHLDYHETMDAYFEAKMRLFDEVVEEDGKAIIWDGGEECEWTRRAIEHALSRKLH 254

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VL+VG +G F+ L    A    Q + +  +G+      PL G +Q  NALV+AGL IA G
Sbjct: 255 VLTVGERGDFLRLAAREATQLGQVLDVEYDGESRKVKLPLIGAYQAANALVSAGLAIATG 314

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT----ITSG 382
              A V + + +L  V GR E     + G  +Y+DYAHT ++LE  +  +R        G
Sbjct: 315 AAPAQVFDAIGRLQPVRGRLERACLTASGAPVYIDYAHTPDALEAAIAALRPHVDGEKGG 374

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
           ++IVVFG GGDRD GKR  MGK+A D AD+ I+TDDNPR EDP +IRA ++ G  G    
Sbjct: 375 KLIVVFGAGGDRDTGKRAPMGKVAADSADLVIITDDNPRGEDPGEIRAAVLEGAGGADHV 434

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV----DCDIIREILGL 495
              G R EAI  AI  +   D+++VAGKGHE   I+ +GE  M V    D ++ RE   L
Sbjct: 435 RAIGGRREAIAAAIGQVGAHDIILVAGKGHEQGQIIGSGE-TMRVMPFDDVEVARECAAL 493

Query: 496 I 496
           +
Sbjct: 494 V 494


>gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 494

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 184/462 (39%), Positives = 267/462 (57%), Gaps = 2/462 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      +  I  ++ DSR +  G +F A+ G++  G  F P A+  GA AI+  
Sbjct: 9   LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +A + Q  +  +R +T  ++VV++ R+ L+  A+  +G  PE ++AVTGT+GK+SVASFV
Sbjct: 69  AAGA-QIVAELLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFV 127

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +QI    G  +  +G T    S++     TTP P+ L  AL+  ++ GVTH ++EASSHG
Sbjct: 128 RQIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHG 187

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP +  A+I  DD   
Sbjct: 188 LEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRG 247

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +++   A   G  V+SVG     + L       + Q +  +   K +     L G FQ  
Sbjct: 248 EQMRAVAAARGQEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAE 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A GL IA G D   V + L  L  V GR +   T   G  ++VDYAHT +++   +
Sbjct: 308 NILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAI 367

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA + 
Sbjct: 368 KALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVK 427

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            G P  +E G+R EAI   ++ L   D L++ GKGHET  IV
Sbjct: 428 GGAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIV 469


>gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 486

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 205/455 (45%), Positives = 267/455 (58%), Gaps = 21/455 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR ++ G +F A+ G K DG  FI  AIA GA A+   S             +
Sbjct: 22  VSGLAVDSRAVRPGDLFFALSGAKTDGARFIAAAIAAGAIAVAGGS-------PPGTALS 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + + N R  L++ A+R Y + P  I AVTGTSGK+SVA+F +QI Q+ G SS  IG 
Sbjct: 75  VPYVELPNPRLALAMAAARFYPRQPATIAAVTGTSGKTSVAAFTRQIWQKLGHSSASIGT 134

Query: 150 TSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              +S    D R     LTTP PI L + +  ++  GVTH++ EASSHGLDQ+RLDG+++
Sbjct: 135 VGLVS----DKRTVYGSLTTPDPIALHRQIDEITQDGVTHLAFEASSHGLDQYRLDGVRV 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            AG FTNL RDH+DYH     Y NAK+RLF +L+P    A+I AD   S +VM  A    
Sbjct: 191 SAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVPPGGAAVISADHECSADVMAAAQARD 250

Query: 265 CRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            R+++VG  G      I L         QQ+ +   G+ +    PL G FQV NALVAAG
Sbjct: 251 LRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQHCGRMYTIRLPLVGAFQVENALVAAG 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L I  G D   V E LE L    GR E VG ++ G  I++DYAH  ++L   L+ +R   
Sbjct: 311 LAIGTGSDPQAVFEALETLEGAKGRLELVGEHN-GAPIFIDYAHKPDALAKALQALRPYA 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + +++VVFG GGDRD GKRP+MG IA   AD  IVTDDNPRSEDP  IRA I+   PG  
Sbjct: 370 ARQLVVVFGAGGDRDTGKRPLMGAIAAAEADRVIVTDDNPRSEDPAAIRAAILAAAPGAR 429

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           E G+R EAI+ AI  L   D LV+AGKGHE   I+
Sbjct: 430 EIGDRAEAIKVAIGELQPGDALVIAGKGHEVGQII 464


>gi|99081858|ref|YP_614012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
 gi|99038138|gb|ABF64750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
          Length = 494

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/457 (38%), Positives = 257/457 (56%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      + +I  ++ DSR +  G++F A+ G +  G  F+ Q + QGA AI+  
Sbjct: 9   LSQLGLTARAGLDPQITGLAVDSREVGEGFVFAALPGTRVHGATFVEQVLDQGAVAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +     A   +   ++V ++ R+ LS  A+  +G  P  + AVTGT+GK+SV++F++
Sbjct: 69  AKGAEIAGEAIAAAGAALVVAEDPRQALSGAAALWFGAQPPVMAAVTGTNGKTSVSTFLR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 129 MIWTELGHKAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +L ++  A+I   D    
Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  +++VG     I L  +      Q +  +   + F     L G FQ  N
Sbjct: 249 EMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVAAGL IA G D   V + L  L  V GR +   T   G  ++VDYAHT +++   +K
Sbjct: 309 VLVAAGLAIASGEDPEQVFDTLPHLSTVRGRMQLAATRDNGATVFVDYAHTPDAVATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG  A D AD  IVTDDNPRSEDP  IRA ++ 
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGAAAQDNADAVIVTDDNPRSEDPAAIRAAVMG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G P  +  G+R EAI   ++ML   D L++ GKGHE+
Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEAGDALLICGKGHES 465


>gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
 gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
          Length = 494

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/462 (39%), Positives = 267/462 (57%), Gaps = 2/462 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      +  I  ++ DSR +  G +F A+ G++  G  F P A+  GA AI+  
Sbjct: 9   LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +A + Q  +  +R +T  ++VV++ R+ L+  A+  +G  PE ++AVTGT+GK+SVASFV
Sbjct: 69  AAGA-QIVAQLLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFV 127

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +QI    G  +  +G T    S++     TTP P+ L  AL+  ++ GVTH ++EASSHG
Sbjct: 128 RQIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHG 187

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP +  A+I  DD   
Sbjct: 188 LEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRG 247

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +++   A   G  V+SVG     + L       + Q +  +   K +     L G FQ  
Sbjct: 248 EQMRAVAAARGHEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAE 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A GL IA G D   V + L  L  V GR +   T   G  ++VDYAHT +++   +
Sbjct: 308 NILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAI 367

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA + 
Sbjct: 368 KALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVK 427

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            G P  +E G+R EAI   ++ L   D L++ GKGHET  IV
Sbjct: 428 GGAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIV 469


>gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
          Length = 501

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/470 (37%), Positives = 256/470 (54%), Gaps = 7/470 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +     R   I  ++ DSR ++ G +F A+ G +  G  FI  A+  GA AI+  
Sbjct: 9   LTDLGLTAQGGRRADITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +        +S+  ++V ++ R+ L+  A+  +G  PE ++ VTGT+GK+SVASF +
Sbjct: 69  AAGARIAADVLAQSDAALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVASFCR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  IG T    ++      TTP PI L + L+     GVTH ++EASSHGL
Sbjct: 129 QIWCELGYEAVNIGTTGVEGAYEAPLAHTTPEPITLHRVLAECEVAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L+A  F+N  +DH+DYH T   YF AK  LF  +LP++  A+I  DD    
Sbjct: 189 EQRRLDGVHLVAAGFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVINIDDPKGP 248

Query: 255 EVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + + A   G  +++VG + G  +H++        Q +    +G+       L G FQ  
Sbjct: 249 AMAEIARARGQDLITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLNLMGGFQGE 308

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N  +AAGL IA G D   V + L  +  V GR +   T   G  ++VDYAHT +++   L
Sbjct: 309 NVALAAGLVIAAGSDPDRVFDTLRHMKTVRGRMQLAATRRNGAAVFVDYAHTPDAVSTAL 368

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R    GR++ + G GGDRD  KRP+MG  A   AD+ IVTDDNPRSEDP  IRA ++
Sbjct: 369 SALRPHVMGRLVAIIGAGGDRDTAKRPLMGAAAAQNADLVIVTDDNPRSEDPAAIRAAVM 428

Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G+          E G+R EAI   ++ML   D L++ GKGHET  IV +
Sbjct: 429 AGVRDAGGADWATEVGDRAEAILRGVDMLGPGDALLICGKGHETGQIVGD 478


>gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 184/445 (41%), Positives = 257/445 (57%), Gaps = 9/445 (2%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G++F A  G K +G  FI +AIA GA AIV      ++            LV 
Sbjct: 32  DSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKIE--------GAVHLVA 83

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N R   +  A+R Y   P  + AVTGT+GK+SVA   +Q+   +G  +  IG    I++
Sbjct: 84  ENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIGTLGVITA 143

Query: 156 -FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             +    +TTP  +      S L+   ++HV  EASSHGLDQ+R DG K+IAG+FT+  R
Sbjct: 144 KNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGAKVIAGAFTSFSR 203

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+DYH T + Y  AK+RLF+E +  +  A+I+ADD  +  V+      G +++ +G + 
Sbjct: 204 DHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKRGLKLIDIGEKA 263

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           + I L    A    Q +T+S++G+ +    PL G +Q+ NALVAAGL +A G D    + 
Sbjct: 264 EAIRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNALVAAGLVLATGGDIKQTMA 323

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L  L  V GR E    +  G  +YVDYAHT + L   ++ +R  T G + VVFG GGDR
Sbjct: 324 ALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIEALRPHTEGLLWVVFGAGGDR 383

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           D+GKRP MGKIA +LAD  IVTDDNPR ED   IR E++ G P   E G R EAI +AI+
Sbjct: 384 DKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEVLVGAPLAEEIGGRKEAIFSAIK 443

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGE 479
              K D++++AGKGHE   I+  GE
Sbjct: 444 RAEKGDIVLIAGKGHEQGQIIGRGE 468


>gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
 gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
          Length = 503

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/459 (39%), Positives = 262/459 (57%), Gaps = 7/459 (1%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  I  +S DSR ++ G +F A+ G K  G   I  A+  GA AI+  +  +       
Sbjct: 23  RDATITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILTDAQGAQIAAKEL 82

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             S+  +++ ++ R  L+L AS  +G HPE ++AVTGT+GK+SV++F +QI     L++ 
Sbjct: 83  ADSSAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFARQIWIEMELAAV 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G T    ++    + TTP PI L + L+   S G+THV++EASSHGLDQ RLDG+ L 
Sbjct: 143 NLGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHGLDQRRLDGVVLA 202

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTN  +DH+DYH+T +AYF+AKM LF  LLP++  A+I  DD+   EV++ A + G 
Sbjct: 203 AAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKGPEVVQIAESRGL 262

Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++VG +    + L         Q++    +         L G FQ  N L+AA L IA
Sbjct: 263 ETITVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQADNVLLAAALVIA 322

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G D     + L  L  V GR +   T   GG ++VDYAHT +++   L  +R    G++
Sbjct: 323 AGGDPEEAFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATALMAMRPHVMGKL 382

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PG 438
           I + G GGDRD GKRP+MG+ A+  AD+  VTDDNPRSEDP  IRA ++ G         
Sbjct: 383 IAIVGAGGDRDTGKRPLMGQAAVQNADMVFVTDDNPRSEDPRVIRAAVMAGALENAAGKS 442

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            IE G+R EAI   I+ L   D L++AGKGHE+  I+ +
Sbjct: 443 VIEVGDRAEAILRGIDALGPGDALLIAGKGHESGQIIGD 481


>gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 502

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 186/480 (38%), Positives = 269/480 (56%), Gaps = 24/480 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  L+  P Q    KI  +S +SR I+ G +F A+ G+  DG ++I  AI  GA  I+
Sbjct: 5   DLLKNLADIPDQAASIKIGGMSENSRAIKPGDMFAAVAGSSTDGRIYIKAAIDAGARVIL 64

Query: 73  VSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
                 ++   A +   +TPI++V+N R  L+  A+R + K P  I AVTGT+GK+S   
Sbjct: 65  TD----MRPLEAPLDDLDTPIIMVENPRLVLAKAAARFWHKQPGMIAAVTGTNGKTSTTD 120

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNR-----------LTTPSPIYLAKALSYLSSQ 180
           F++Q+  R    +  IG   T+     D R           LTTP  + L  ALS L   
Sbjct: 121 FLRQLWTRVTWQASSIG---TLGVKGTDTRKMDGKILDLPKLTTPDSVSLHSALSPLCDA 177

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           GVTH+++EASSHGL Q RLDG+ +   +FTNL +DH+D+H   ++YF AK  LF +LL  
Sbjct: 178 GVTHLALEASSHGLVQQRLDGLNIHIAAFTNLTQDHLDHHNDMESYFIAKSHLFMDLLMH 237

Query: 241 ESPAIIYADDAYSKEV--MKRAHNAGCRVL--SVGYQGKF-IHLKKVCAIHNKQQVTISV 295
              AII  DD Y + +  M  A     +++  + G+       ++K+  I N   +++  
Sbjct: 238 AGAAIINIDDPYGRRLCDMLTAQGDARQIVIQTFGFADDADFQIEKITPIDNILDMSVKH 297

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +GK +     + G FQ  NAL A  +    G+     L  L  L   PGR + V  + +G
Sbjct: 298 DGKSWHIPLAMSGTFQAVNALTAGIMAYMSGLPLQDSLGGLAYLKPAPGRMQTVTGHPQG 357

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I VD+AHT ++L   L+ +R   S ++ V+FGCGGDRD  KR +MG IA D AD+ IV
Sbjct: 358 AQIVVDFAHTPDALRAALEALRPEVSHKLYVLFGCGGDRDPSKRALMGAIADDAADVVIV 417

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IR+ I+   P  IE   R  AI+TA+E L + DVL++AGKGHETV ++
Sbjct: 418 TDDNPRSEDPASIRSAIMAASPKSIEIFPRDTAIKTALEQLVEGDVLLIAGKGHETVQLI 477


>gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
 gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
          Length = 497

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 172/453 (37%), Positives = 258/453 (56%), Gaps = 1/453 (0%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  I  ++ DSR ++ G++F A+ G +  G  FI  A+ QGA A++  +  +       
Sbjct: 22  RDVVITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVLTDAEGARIAERDL 81

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             S+  +++ ++ R+ L+  A+  + K P  + AVTGT+GK+SVASF++QI    G  + 
Sbjct: 82  AESDAALVIAEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASFLRQIWMLVGREAV 141

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G T    S++     TTP PI L + ++ L+  G+TH ++EASSHGL Q RLDG+ L 
Sbjct: 142 NLGTTGVEGSYSAPLMHTTPEPITLHRMMAELAEAGITHAAMEASSHGLAQRRLDGVMLR 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G+FTNL +DH+DYH   + YF+AK  LF  +L  ++ A+I  D     ++ + A + G 
Sbjct: 202 VGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLRGVDMAEVAADRGL 261

Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            VL+VG ++   + +       + Q +  S +G+       L G FQ  N LVAAG+ I 
Sbjct: 262 DVLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQAENVLVAAGMAIL 321

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G D   V   L  L  V GR E     + G  ++VDYAHT +++   LK +R    GR+
Sbjct: 322 SGEDPDQVFTVLPALSTVHGRMELAARRTNGAAVFVDYAHTPDAVATALKALRPHVLGRL 381

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           + V G GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IR  ++ G P   E  +
Sbjct: 382 VAVIGAGGDRDRTKRPLMGEAAAAHADLVFVTDDNPRSEDPAAIRQAVLLGCPDATEVAD 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R EAI  A++ L   D L++AGKGHET  I+ +
Sbjct: 442 RAEAILRAVDALAPGDALLIAGKGHETGQIIGD 474


>gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
 gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
          Length = 467

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 182/453 (40%), Positives = 261/453 (57%), Gaps = 7/453 (1%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIRSNTPIL 93
           DSR ++ G++F A+ G K  G  FI  A+ QGA AI+  +  A   Q F +   S+  ++
Sbjct: 2   DSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSL--SDAALV 59

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           V ++ R+ L+  A+  +G  PE ++AVTGT+GK+SVA+F +QI +R G  +  +G T   
Sbjct: 60  VAEDPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGVE 119

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
            +++     TTP PI L + L+     GVTH ++EASSHGL Q RLDG+ L+A  FTN  
Sbjct: 120 GAYSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRLDGVHLVAAGFTNFT 179

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +DH+DYH +   YF AK  LF  +LP++  A+I  +D+   E+   A   G  +++VG +
Sbjct: 180 QDHLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERGQDLITVGRE 239

Query: 274 -GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G  + LK        Q +    E +       L G FQ  N L+AAGL I  G D+  V
Sbjct: 240 VGADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGADAERV 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E L  +  V GR +   T   G  ++VDYAHT +++   +K +R    GR+I + G GG
Sbjct: 300 FETLPGMKTVRGRMQLAATRDTGATVFVDYAHTPDAVATAIKALRPHVMGRLIAIVGAGG 359

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           DRD+ KRP+MG+ A   AD+ IVTDDNPRSEDP  IRA ++ G PG  E G+R EAI   
Sbjct: 360 DRDRAKRPLMGQAAGTYADLVIVTDDNPRSEDPASIRAAVMQGCPGASEVGDRAEAILRG 419

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           ++ L   D L++ GKGHET  +V  GE  +  D
Sbjct: 420 VDALGPGDALLICGKGHETGQVV--GEDVLPFD 450


>gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
 gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
          Length = 493

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 187/472 (39%), Positives = 265/472 (56%), Gaps = 21/472 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV-- 72
           +  L +     +E +I  ++ DSR ++ G++F A+ G K  G  FI  A+  GA A++  
Sbjct: 8   LADLGLTAKAGQEARITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGASAVLTD 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V  A    D  A   S+  ++V  + R+ L+  A+  +G  PE ++ VTGT+GK+SVA+F
Sbjct: 68  VEGAKIADDVLAG--SSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTSVATF 125

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    ++   +  TTP PI L + L+  ++ GVTH ++EASSH
Sbjct: 126 TRQIWSALGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAMEASSH 185

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RLDG++L A  FTN  +DH+DYH T  AYF AK  LF  +LP +  A+I  +D  
Sbjct: 186 GLDQRRLDGVRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINLNDPR 245

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305
             E+   A   G R++SVG+        KVC +    Q      G+D  +L+        
Sbjct: 246 GAEIALLAAERGQRLISVGH-------GKVCDLQIAGQ-RFDATGQDVRYLWQGQPHQVR 297

Query: 306 --LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G FQ  N  +AAGL I  G  +  V   L +L  V GR +   T   G  ++VDYA
Sbjct: 298 LNLIGGFQAENVALAAGLAIGSGAPAGDVFAVLPRLEGVRGRMQLAATRRNGASVFVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +++   LK +R    GRI+VVFG GGDRD  KRP+MG+ A + AD+  VTDDNPRSE
Sbjct: 358 HTPDAIATALKALRPHVMGRIVVVFGAGGDRDTTKRPLMGQAAREHADVLYVTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DP  IRA I+   P   E G+R EAI   ++ L   D L+VAGKGHE+  ++
Sbjct: 418 DPATIRAAIMAACPEANEVGDRAEAILRGVDALGPGDALLVAGKGHESGQVI 469


>gi|307294501|ref|ZP_07574343.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
 gi|306878975|gb|EFN10193.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
          Length = 480

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 258/462 (55%), Gaps = 14/462 (3%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F A  G + +G  FIP A         V +           R    I + 
Sbjct: 30  DNRKVAPGTVFGAFQGARMNGEDFIPAA---------VQAGAVAVVARPEARVEGAIHIA 80

Query: 96  -DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            DN R+  +  A+R +   PE  +AVTGT+GK+S     +Q+ +  G  S  IG     +
Sbjct: 81  HDNPRRLFAQLAARYFAPFPEMTVAVTGTNGKTSTVELTRQLWRMLGHHSASIGTLGVTT 140

Query: 155 SFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           S  Q    LTTP  +     +S L  +G+TH + EASSHGL Q+R +G+ + A +FTNL 
Sbjct: 141 SVDQVSTGLTTPDIVTFLSNMSGLKREGITHAAFEASSHGLAQYRTEGLPVSAAAFTNLS 200

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           RDH+DYH    +YF AKMRLF+ ++  +  A+++ADD +S +V++RA   G RVLSVG Q
Sbjct: 201 RDHLDYHGDMDSYFEAKMRLFDGVVAPDGAAVVWADDEWSDKVIRRATKRGLRVLSVGVQ 260

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           G+ + L         Q + + VEGK +    PL G +Q  NAL AA L IA G D   VL
Sbjct: 261 GQALRLANRTPTQLGQTLEVEVEGKPYKVSLPLIGAYQAANALTAAALVIAGGEDVGKVL 320

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           E L ++  V GR E       G  +YVDYAHT + L   ++ +R  T GR+I +FG GGD
Sbjct: 321 ELLGRVQPVRGRLERAVITRAGAPVYVDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGD 380

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           RD GKRP MGK+A DLAD  IVTDDNPRSE+P  IRA ++ G PG  E G R  AI  AI
Sbjct: 381 RDAGKRPQMGKVAADLADHVIVTDDNPRSEEPSSIRAAVMAGAPGAEEIGGRRAAIAAAI 440

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494
                 D++++AGKGHE   I+  G++ +   D  + RE  G
Sbjct: 441 AQAGADDIVLLAGKGHEQGQII--GDRVLPFDDVTVARECAG 480


>gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 485

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 181/445 (40%), Positives = 255/445 (57%), Gaps = 10/445 (2%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G++F A  G K +G  FI +AIA GA AIV      ++            LV 
Sbjct: 32  DSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKIE--------GAVHLVA 83

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N R   +  A+R Y   P  + AVTGT+GK+SVA   +Q+   +G  +  IG    I++
Sbjct: 84  ENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIGTLGVITA 143

Query: 156 F-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             +    +TTP  +      S L+   ++HV  EASSHGLDQ+R DG K+IAG+FT+  R
Sbjct: 144 KNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGAKVIAGAFTSFSR 203

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+DYH T + Y  AK+RLF+E +  +  A+I+ADD  +  V+      G +++ + ++ 
Sbjct: 204 DHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKRGLKLIDI-WKA 262

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           + I L    A    Q +T+S++G+ +    PL G +Q+ N LV AGL +A G D    + 
Sbjct: 263 EAIRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNGLVRAGLVLATGGDIKQTMA 322

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L  L  V GR E    +  G  +YVDYAHT + L   ++ +R  T G + VVFG GGDR
Sbjct: 323 ALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIEALRPHTEGLLWVVFGAGGDR 382

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           D+GKRP MGKIA +LAD  IVTDDNPR ED   IR E++ G P   E G R EAI +AI+
Sbjct: 383 DKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEVLVGAPLAEEIGGRKEAIFSAIK 442

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGE 479
              K D++++AGKGHE   I+  GE
Sbjct: 443 RAEKGDIVLIAGKGHEQGQIIGRGE 467


>gi|162148956|ref|YP_001603417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545291|ref|YP_002277520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787533|emb|CAP57129.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532968|gb|ACI52905.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 487

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 194/471 (41%), Positives = 262/471 (55%), Gaps = 14/471 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V++DSR +  G +FVAI G + DG        +    A + + A ++     T    
Sbjct: 24  ITGVTADSRRVTPGMLFVAIPGTRADG--------SAFIPAAIAAGAAAIVAPRGTPAPG 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ VD  R+ L+L A+ L G  P++++AVTGT+GK+S   F++QI       +  IG 
Sbjct: 76  VPVIGVDEPRRALALLAAFLAGAQPDHVVAVTGTNGKTSTVDFLRQIWGHQHRRAASIGT 135

Query: 150 TSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              I+     +    LTTP  + LA  L+ ++  GVT V++EASSHGLDQHRLDG++L A
Sbjct: 136 LGVIADIDLPDCGPVLTTPDSVGLATLLAAMARGGVTDVAIEASSHGLDQHRLDGLRLSA 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKR-AHNAG 264
             FTNL RDH+DYH T  AY  AK+RLF+ LLP +      AD D  + + ++  A   G
Sbjct: 196 AGFTNLTRDHLDYHGTLDAYRAAKLRLFDTLLPPDGLMAANADMDTATLDALRDIAARRG 255

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +  VG  G  I L     +   Q + I+  G   D +  LPG FQ  NAL+AA L   
Sbjct: 256 LDLRLVGEAGDAIRLLGSTPLPEGQHLRIASGGVARDIVLALPGRFQADNALLAAALAAP 315

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
                A  ++ L  L  V GR E       G   YVDYAHT ++L  +L  +R   SGR+
Sbjct: 316 GADGLARAIDLLPALRGVRGRMERAALLPNGAAAYVDYAHTPDALARLLDALRPHASGRL 375

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           I VFG GGDRD+GKRP+MG+ A   ADIAIVTDDNPR+EDP  IR E++ G PG IE G+
Sbjct: 376 IAVFGAGGDRDRGKRPLMGQEATRRADIAIVTDDNPRTEDPAFIRGEVLAGAPGAIEIGD 435

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           R  AI   + ML   DVLVVAGKGHE    +         D  +IR++ G+
Sbjct: 436 RARAIAEGLSMLRAGDVLVVAGKGHEQGQTIGTATLPFD-DASVIRDLAGV 485


>gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 503

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 171/454 (37%), Positives = 251/454 (55%), Gaps = 6/454 (1%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+++ ++ DSR ++ G +F A+ G +  G  F+ +A+  GA AIV   A +       I 
Sbjct: 26  RRVSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKAGATAIVTDPAGAAIIGDTLIG 85

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               ++V+ + R  ++  A+  +G  P  + AVTGT+GK+SV SF++QI Q +G  +  I
Sbjct: 86  QEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGKTSVTSFLRQIWQYAGHKAINI 145

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G T     +    + TTP  + L + LS  +  GVTH ++EASSHG++Q RL+G+ L   
Sbjct: 146 GTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAAMEASSHGIEQRRLEGVMLSVA 205

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTN  +DH+DYH+T  AYFNAK  LF  LLP++  A+I  DD    ++ + A + G  +
Sbjct: 206 GFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVINIDDPKGADIARVAEDRGQEI 265

Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L VG   G  + L         Q +     G+ +     L G FQ  N L+AAGL IA G
Sbjct: 266 LGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRLDLIGGFQAENVLLAAGLAIASG 325

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D A V      L  V GR +       G  ++VD+AHT +++E +L+ IR    GR++ 
Sbjct: 326 DDPAHVFAAFPHLTTVRGRMQLAARRGNGASVFVDFAHTPDAIETVLQAIRPHVMGRVVA 385

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIE 441
           + G GGDRD+ KRP+MG  A   AD+ IVTDDNPR+ED   IR  ++ G          E
Sbjct: 386 IVGAGGDRDRTKRPLMGAAAARFADMVIVTDDNPRTEDAATIRDAVMAGAVAEGGCDVRE 445

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            G+R EAI   ++ML   D L++ GKGHE+  IV
Sbjct: 446 VGDRAEAILRGVDMLEAGDALIICGKGHESGQIV 479


>gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter litoralis HTCC2594]
 gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 495

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 183/473 (38%), Positives = 270/473 (57%), Gaps = 26/473 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R +  G +F A  G+  +G  +I QA+A GA A+V     +++  +  I  +TP    
Sbjct: 28  DHRKVAPGTVFGAFQGSAVNGEDYISQAVAAGAVAVVAQPEATVEG-AVHIAEDTP---- 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------P 149
              R+  +L A++ +   P+ I+AVTGT+GK+S     +Q+ + +G  +  IG      P
Sbjct: 83  ---RRAFALLAAQYFTPVPKTIVAVTGTNGKTSTVEMTRQLWRMAGERAASIGTLGVTTP 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             ++S+      LTTP  +     +S L+ +GVTHV+ EASSHGL Q+R +G+ + A +F
Sbjct: 140 DESVSTG-----LTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGLPVAAAAF 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVL 268
           TN  RDH+DYH T   YF AKMRLF+E++     A+++  ++ ++ + ++RA     R+ 
Sbjct: 195 TNFSRDHLDYHGTMDEYFEAKMRLFDEVVDAGGTAVVWTGNSEWTAQAIERARQRELRLF 254

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +VG QG+ I L+        Q++ I   G+      PL GE+QV NAL AAGL IA G D
Sbjct: 255 TVGEQGEDIRLRARTPTQLGQELEIEHAGETRKLRLPLIGEYQVANALTAAGLAIATGTD 314

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A V + + +L  V GR E     + G  +YVDYAHT ++LE  L  +R    GR++ +F
Sbjct: 315 PAAVWDGVSRLQPVRGRLERAVITATGAPVYVDYAHTPDALEAALAALRPHVEGRLLCIF 374

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIE 447
           G GGDRD GKR  MG++A  +AD  IVTDDNPR EDP  IR +++ G      E  +R E
Sbjct: 375 GAGGDRDTGKRAPMGEVASRMADAVIVTDDNPRGEDPAAIRGQVLEGAGDNAREMADRRE 434

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV----DCDIIREILGLI 496
           AIR  IE    +D++++AGKGHET  I+ +GE  M V    D  + RE    I
Sbjct: 435 AIREVIESAAAKDIVLIAGKGHETGQIIGSGE-NMRVEPFDDVQVARECAAQI 486


>gi|326388913|ref|ZP_08210495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206513|gb|EGD57348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 485

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 184/470 (39%), Positives = 257/470 (54%), Gaps = 25/470 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA------IVVSSAYSLQDFSATIRSN 89
           D R +  G +F A  G + +G  FIP AIA GA A       VV  A  + D        
Sbjct: 30  DHRKVAPGTVFGAFPGARVNGEDFIPAAIAAGAVAVVARPEAVVEGAVHIPDA------- 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                    R+  +  A+  +   PE ++AVTGT+GK+S     +QI + +G  S  IG 
Sbjct: 83  -------EPRRLFARIAAGFFTPVPETVVAVTGTNGKTSTVEMTRQIWRMAGHRSASIGT 135

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T +  +    +TTP  +     +S L+ +G+TH++ EASSHGLDQ+R +G  + AG+
Sbjct: 136 LGVTTADESISTGMTTPDIVTFLANVSGLAREGITHLAYEASSHGLDQYRSEGPVVAAGA 195

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH + +AYF AKMRLF+E++ +   A+++ADD +S   +  A     RVL
Sbjct: 196 FTNLSRDHLDYHPSMEAYFAAKMRLFDEVVGEGGAAVVWADDEWSDRAIDHARRRALRVL 255

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +VG +G+ I L         QQ+ +  EG+      PL G +Q  NALV+AGL +A G D
Sbjct: 256 TVGERGETIRLVGRKPTLLGQQLDLVHEGQARKITLPLIGAYQAANALVSAGLVLATGGD 315

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                + L +L  V GR E       G  +YVDYAHT +++      +R    GR+IVVF
Sbjct: 316 PTQTFDALGRLQPVRGRLERAAITRTGAPVYVDYAHTPDAITAACAALRPHVEGRLIVVF 375

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIE 447
           G GGDRD GKR  MG  A   AD+ IVTDDNPR EDP  IRA ++ G  G   E G+R  
Sbjct: 376 GAGGDRDPGKRGPMGAAACAGADLVIVTDDNPRGEDPAAIRAAVLAGCTGVARETGDRRA 435

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV---DCDIIREILG 494
           AI  AI    K D+++VAGKGHE   ++  G+   ++   D  ++RE  G
Sbjct: 436 AIAEAIAQAGKGDIVLVAGKGHEQGQVIGRGDAARTLPFDDVAVVRECTG 485


>gi|329890508|ref|ZP_08268851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
 gi|328845809|gb|EGF95373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
          Length = 356

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 160/315 (50%), Positives = 209/315 (66%), Gaps = 2/315 (0%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LT+P     A+ L+ L+ + VTH+++EASSHG+DQ RLDG+ + A  FTNL +DH+DYH 
Sbjct: 22  LTSPDAAEAARLLAELARKEVTHLALEASSHGIDQRRLDGVAIKAAGFTNLTQDHLDYHG 81

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           T   Y  AKMRLFE LLP+   A++ AD DAYS      +  AG  V+ VG +G+ + L 
Sbjct: 82  TMDEYRAAKMRLFEALLPRGRTAVLNADSDAYSA-FASASIMAGLGVMGVGERGRDLTLL 140

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              A    Q++T+ V G+  D L PL G FQ  NALVAAGLCIA G D   V+  LE + 
Sbjct: 141 ARRATPEGQRLTLDVRGRLHDVLLPLAGAFQASNALVAAGLCIAGGEDPDRVIPALELIQ 200

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
              GR + +   +RGG +YVDYAHT + LE +L  +R   +GR+IVVFG GGDRD+ KRP
Sbjct: 201 GAQGRLQRIPGGARGGEVYVDYAHTPDGLETVLNALRPHATGRLIVVFGAGGDRDRAKRP 260

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +MG+IA  LAD AIVTDDNPRSEDP  IRA++  G P  +E G+R EAIR A+ ++ + D
Sbjct: 261 LMGEIAGRLADTAIVTDDNPRSEDPAAIRAQVRAGCPDSLEIGDRREAIRHAVSLMREGD 320

Query: 461 VLVVAGKGHETVHIV 475
           V+V+AGKGHE   IV
Sbjct: 321 VVVIAGKGHEQGQIV 335


>gi|87199150|ref|YP_496407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134831|gb|ABD25573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 482

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 179/476 (37%), Positives = 259/476 (54%), Gaps = 40/476 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI--------------PQAIAQ 66
           +P+   +  +   + D R +  G +F A  G + +G  FI              P+A+ +
Sbjct: 12  YPVAAADANVTGFAIDHRKVAPGTVFGAFPGTRFNGEDFIADAVKAGAVAVVARPEAVVE 71

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSG 125
           GA                       + V D   R+  +  A++ +   PE ++AVTGT+G
Sbjct: 72  GA-----------------------VHVADAEPRRAFAALAAQFFQPVPETVVAVTGTNG 108

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+S     +QI + +G S+  IG    T +  +    LTTP  +     ++ L+ +GVTH
Sbjct: 109 KTSTVEMTRQIWRMAGRSAASIGTLGVTTADESVSTGLTTPDIVTFLSNMTGLAREGVTH 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+ EASSHGL Q R +G+++IAG+FTNL RDH+DYH T + YF AKMRLF+ ++     A
Sbjct: 169 VAYEASSHGLSQFRNEGLRVIAGAFTNLSRDHLDYHPTMEDYFAAKMRLFDHVVDDGGVA 228

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +++ DD +S   ++     G R+LSVG QG+ I L         Q + ++ +G       
Sbjct: 229 VVWMDDEWSGRAVEHVRRRGLRLLSVGEQGETIRLLARTPTQLGQVLEVAFDGARRKISL 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G +Q  NALV+AGL IA GID+  V + L +L  V GR E    N  G  +YVDYAH
Sbjct: 289 PLIGAYQAANALVSAGLAIASGIDAGQVFDALARLQPVRGRLERAAINRAGAPVYVDYAH 348

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T +++E  +  +R    GR+I VFG GGDRD+GKRP MG+ A   +D+ IVTDDNPR ED
Sbjct: 349 TPDAIEAAIAALRPHVKGRLITVFGAGGDRDEGKRPEMGRAACAGSDLVIVTDDNPRGED 408

Query: 425 PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P  IRA I+ G      E G+R  AI  AI    + D+++VAGKGHE   I+  G+
Sbjct: 409 PAAIRAAIMAGCADNAREIGDRRSAIAAAIAEAGRDDIVLVAGKGHEQGQIIGRGD 464


>gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
 gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
          Length = 483

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 178/479 (37%), Positives = 269/479 (56%), Gaps = 27/479 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  IN +  DSR I    +FVAI G K DGH FI +AI++GA+ IV S    + +    I
Sbjct: 20  ELDINAIQYDSRKISESDVFVAIEGFKVDGHKFIEKAISEGAKVIVCSKEVEIHEEITYI 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
           +       V NTRK L++ AS LY    ++I  + +TGT+GK++    ++ I + +G S+
Sbjct: 80  K-------VQNTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTSTYMIKSILELAGHST 132

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             IG   TIS+F  + ++    TTP  + L +    +  + + +  +E SSH L   R+ 
Sbjct: 133 GLIG---TISNFIGNEKIKSERTTPESLELHEMFKKMKDKNIEYCVMEVSSHSLSLDRVY 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G++   G FTNL +DH+D+H+T + Y+ AK+ +F+        +II  DD Y + V+   
Sbjct: 190 GLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNA----KNSIINIDDTYGERVLNDV 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            ++  ++     +   +  K +       +  +  + ++      +PG + VYNAL +AG
Sbjct: 246 PDSSNKITYSTEKKADLFAKDIVNYARGAEFILCYKSEETHINLSIPGIYNVYNALCSAG 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTI 379
            C++ GI    V + LE + VVPGR E        G  + +DYAHT + LE IL+  R  
Sbjct: 306 ACLSEGISMEDVKKGLESV-VVPGRCENATKEYDLGFDVIIDYAHTPDGLENILETARDF 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
           T GR+I VFGCGGDRD+ KRPIMGKI  D++DIAIVT DNPR+E+P +I  +++ GI   
Sbjct: 365 TKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIVTSDNPRTEEPSEIIKDVVEGIKKD 424

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVDCDIIREIL 493
            +I   NR EAI+ AIE+  K DV+VVAGKGHE   I+ +      +  V  DII+E+ 
Sbjct: 425 NYIVVENRKEAIKKAIEIAKKGDVIVVAGKGHEDYQILKDKTIHFDEREVIADIIKELF 483


>gi|149186207|ref|ZP_01864521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
 gi|148830238|gb|EDL48675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
          Length = 492

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 186/474 (39%), Positives = 266/474 (56%), Gaps = 27/474 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F A  G + +G  FIP AI  GA A+V  +A  ++  +  I S+ P    
Sbjct: 28  DNRKVAPGTVFGAFQGAQVNGEDFIPAAIEAGAVAVVARAAAKVEG-ALHIASDIP---- 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------P 149
              RK  +  A+  +   PE+I+AVTGT+GK+S     +QI + SG  +  IG      P
Sbjct: 83  ---RKCFAELAAGFFTPAPEHIVAVTGTNGKTSCVEMTRQIWRMSGERAASIGTLGVTTP 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             ++S+      LTTP  +     +S L+ +GVTHV+ EASSHGL Q+R +G+ + A  F
Sbjct: 140 DESVSTG-----LTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGVAVEAAGF 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNAGCR 266
           TN  RDH+DYH   + YF AKMRLF+E++   + A+I+    +  ++  V+  A   G  
Sbjct: 195 TNFSRDHLDYHADMEDYFAAKMRLFDEVVSDGATAVIWMGAGESGWNARVVDHAKQRGLT 254

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V++VG QG+ I L         Q +T+   G +     PL G +QV NALV+ GL +A G
Sbjct: 255 VMTVGEQGEDIRLTHREPTQLGQSLTVEHAGTERTINLPLIGAYQVSNALVSGGLALATG 314

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ID++ V + + +L  V GR E       G  +Y+DYAHT ++LE  +  +R   +GR+I 
Sbjct: 315 IDASRVWDAVARLQPVRGRLERAVIAPSGAPVYIDYAHTPDALEAAIAALRPHVTGRLIT 374

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFG GGDRD GKR  MG+ A   +D+ IVTDDNPR EDP  IR  ++ G     E   R 
Sbjct: 375 VFGAGGDRDHGKRAPMGEAAAKASDLVIVTDDNPRGEDPADIRRAVLEGAGEAREVAGRR 434

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV----DCDIIREILGLI 496
           EAI  AI    K D++++AGKGHET  I+ +GE  M V    D ++ RE   LI
Sbjct: 435 EAIHAAIAEAGKDDIVLIAGKGHETGQIIGSGE-NMRVHPFDDVEVARECAALI 487


>gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 479

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 183/467 (39%), Positives = 255/467 (54%), Gaps = 14/467 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ D R +  G +F A VG + +G  FIP           V++           + +
Sbjct: 19  VTGLAIDHRKVAPGTLFGAFVGERFNGEDFIPD---------AVAAGAVAVVARPDAKVD 69

Query: 90  TPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             + V D N R+  +  A+R + + P   +AVTGT+GK+S     +Q+ + +G ++  IG
Sbjct: 70  GAVHVADANPRRAFAHIAARFFHRFPATCVAVTGTNGKTSTVEMTRQLWRMAGFNAASIG 129

Query: 149 PTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T S  +    LTTP  +     +S L+ +GVTH + EASSHGLDQ+R +G+ + A 
Sbjct: 130 TLGITTSVDSASTGLTTPDIVTFLSNMSGLAVEGVTHAAFEASSHGLDQYRTEGLPVKAA 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL  DH+DYH T +AY  AKMRLF E++     AI++ADDA+S  V++ A     RV
Sbjct: 190 AFTNLSHDHLDYHGTMEAYLAAKMRLFREVVQPGGAAIVWADDAHSAAVIEAARARDVRV 249

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L+VG  G+ + L         Q + I+          PL G +Q  NALVAAGL IA G 
Sbjct: 250 LTVGQAGEALRLVSRTPTQLGQLLVIAAGDVTHKVTLPLIGAYQAANALVAAGLVIATGG 309

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D AL L +L +L  V GR E       G  IYVDYAHT +++E  L  +R   +GR+I+V
Sbjct: 310 DVALTLANLARLQPVRGRLERAAIARSGAPIYVDYAHTPDAIEAALDALRPHATGRLILV 369

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FG GGDRDQ KRP MG++A   AD+ I+TDDNPR EDP  IR  I    PG    G+R  
Sbjct: 370 FGAGGDRDQAKRPEMGRVAAAKADLLIITDDNPRGEDPAVIRDAIAAAAPGAQVIGDRRA 429

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV---DCDIIRE 491
           AI  AI      D++ +AGKGHE   IV  G+    +   D  + RE
Sbjct: 430 AIAAAIAAARADDIICIAGKGHEQGQIVGRGDDMRVIPFDDVSVARE 476


>gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
          Length = 483

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 172/465 (36%), Positives = 267/465 (57%), Gaps = 39/465 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I E+  DSR++++G +FV I G   DGH ++  A++ GA A++ S    +++ +     
Sbjct: 22  EIREIQYDSRNVKSGDLFVCIEGYSTDGHKYVSSAVSNGAAAVICSK--DIENLT----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              ++  ++TRK L+L AS  Y  HP +   ++ +TGT+GK++    ++ I +  G   +
Sbjct: 75  ECTVIKTEDTRKVLAL-ASANYYDHPSDKLKVIGITGTNGKTTSTFMMKSILEAQG---Y 130

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI+++  D ++    TTP  + L K  + +  +GV +  +E SSH L   R+ G
Sbjct: 131 KVGLLGTIANYVGDKKIPAHRTTPESLELQKLFAEMVEEGVNYCIMEVSSHSLYLDRVYG 190

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---- 257
           +K     FTNL RDH+D+H+T + Y+NAK+ LF+  L     +++  DD Y + V     
Sbjct: 191 VKFCQAIFTNLTRDHLDFHKTFENYYNAKLILFKNTLS----SVVNIDDEYGERVYEDSE 246

Query: 258 -KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+   A  +V  V  +G  +H+      H++  +  I+ + +       +PG++ V NA
Sbjct: 247 GKKTSYAIDKVADV--KGSNLHM------HSRGVEFDITYKNETQHINLNIPGKYNVMNA 298

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILK 374
           L +A  C+  G+  A V E LE +  VPGR E V  N   G  + VDYAHT + LE ILK
Sbjct: 299 LGSAAACLGEGMSLATVKEGLEAMLCVPGRCEIVTKNYDLGYEVIVDYAHTPDGLENILK 358

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R  T G++I VFGCGGDRD  KRPIMGKI  +L+D A++T DNPR+EDP  I  E++ 
Sbjct: 359 TAREFTKGKLISVFGCGGDRDNTKRPIMGKIGTELSDKAVITSDNPRTEDPMSIIKEVVA 418

Query: 435 GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+    +I   NR EAI+ A+EM  K DV+VVAGKGHE   I+ +
Sbjct: 419 GVEKDNYIVVENRREAIKKAMEMAKKDDVIVVAGKGHEDYQILKD 463


>gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
 gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
          Length = 483

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 179/487 (36%), Positives = 270/487 (55%), Gaps = 49/487 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N+V  DSR I +G +FVAI G   DGH FIP+AI  GA+ IV S    + +    I+  
Sbjct: 23  VNKVEYDSRKILSGDVFVAIEGFNVDGHKFIPKAIENGAKVIVCSKDTEINESCTYIK-- 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                V+NTRK L++ AS  YG +P N   ++ +TGT+GK++    ++ I + +G ++  
Sbjct: 81  -----VENTRKALAIIASNFYG-NPSNKIKLIGITGTNGKTTSTYMIKSILEHAGCNTGL 134

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           IG   TI++F  + ++    TTP  + L +    +  + + +  +E SSH L   R+ G+
Sbjct: 135 IG---TIANFIGEEKIKAERTTPESLELHEMFKKMKDKNIEYCIMEVSSHSLSLDRVYGL 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G FTNL +DH+D+H+T + Y+ AK+ +F         +II  DD+Y + ++K   N
Sbjct: 192 EFSQGVFTNLTQDHLDFHKTFENYYEAKLSMFN----NAKNSIINIDDSYGERMLKDIPN 247

Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQV 312
              +V  S   Q   +             +     G +FD ++          +PG + V
Sbjct: 248 TNLKVTYSTERQADLV----------ANNIVNHARGAEFDLIYKGTTIHINLSIPGIYNV 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEM 371
           YNAL +AG C+   I    V E LE + VVPGR E V    + G  + VDYAHT + LE 
Sbjct: 298 YNALCSAGACLEEEISIEKVKEGLENV-VVPGRCENVTKKYNLGFDVIVDYAHTPDGLEN 356

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           IL   +  T GR+I VFGCGGDRD+ KRPIMGKI  DL+DIAI+T DNPR+E+P  I  +
Sbjct: 357 ILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDLSDIAIITSDNPRTEEPMSIIDD 416

Query: 432 IIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVDC 486
           ++ GI    ++   NR +AI+ A+++  K DV+VVAGKGHE   I+ +      +  V  
Sbjct: 417 VVSGIDKDNYVVVENRKDAIKEAMKIAKKDDVIVVAGKGHEDYQILKDKVIHFDEREVIA 476

Query: 487 DIIREIL 493
           DI++E+ 
Sbjct: 477 DIVKELF 483


>gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium novyi NT]
 gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium novyi NT]
          Length = 483

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 174/481 (36%), Positives = 270/481 (56%), Gaps = 31/481 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +++ +  DSR I    +FVAI G   DGH FI +AI +GA+ IV S           I
Sbjct: 20  ELEVSSIEYDSRKISENDVFVAIEGFNVDGHKFIEKAINEGAKVIVCSKEIE-------I 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
           +     + V+NTRK L++ AS LY    ++I  + +TGT+GK++    ++ I + +G S+
Sbjct: 73  KKGITYIKVENTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTSTYMIKSILESAGHST 132

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             IG   TIS+F  + ++    TTP  + L +    +  + + +  +E SSH L   R+ 
Sbjct: 133 GLIG---TISNFIGNEKIKAERTTPESLELHEMFKKMKDKNIEYCVMEVSSHSLSLDRVY 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G++   G FTNL +DH+D+H+T + Y+ AK+ +F+        +II  DD Y + ++   
Sbjct: 190 GLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNA----KNSIINIDDTYGERILNDV 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            ++  ++     +   +  K +       +  +  + K+      +PG + VYNAL +AG
Sbjct: 246 PDSSNKITYSTEKKADLFAKDIVNHARGAEFVLCYKDKETHINLSIPGIYNVYNALCSAG 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTI 379
            C++ GI    V + LE + VVPGR E    +   G  + +DYAHT + LE IL+  R  
Sbjct: 306 ACLSEGISMEDVKKGLESV-VVPGRCENATKDYDLGFDVIIDYAHTPDGLENILETARDF 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
           T GR+I VFGCGGDRD+ KRPIMGKI  D++DIAI+T DNPR+E+P +I  +++ GI   
Sbjct: 365 TKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIITSDNPRTEEPSQIIKDVVEGIKKD 424

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-----CDIIREI 492
            +I   NR EAI+ AIE+  + DV+VVAGKGHE   I+   +K +  D      DII+E+
Sbjct: 425 NYIVVENRKEAIKKAIEIAKQGDVIVVAGKGHEDYQILK--DKTIHFDERELIADIIKEL 482

Query: 493 L 493
            
Sbjct: 483 F 483


>gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 500

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 270/492 (54%), Gaps = 32/492 (6%)

Query: 2   KLQDLIYKDF---PELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           K+Q+   +DF    +LI  + +     ++  + I +++ +S++ + G  FV I G K DG
Sbjct: 5   KMQNRKGEDFLKLKDLIENIDVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDG 64

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H +I +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G HP  
Sbjct: 65  HEYIDEAIKNGARLVVVDEFFD----TSKIDGKIDYIKTSNTRKALAVMSANFFG-HPSK 119

Query: 117 ---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIY 169
              ++ VTGT+GK+S    ++ I +    +S ++G   TI +      +    TTP    
Sbjct: 120 DFLLIGVTGTNGKTSTTFMIKSILE---ANSQKVGLIGTIKNMIGSKEIEAQHTTPESYD 176

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L K    + ++GV  V +E SSH L+ +R+       G FTNL +DH+D+H T + YF A
Sbjct: 177 LQKLFWQMKNEGVDSVVMEVSSHSLELYRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAA 236

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K++LFE         ++ ADD++ K +++   +          Q   +  K V    NK 
Sbjct: 237 KLKLFE----MSKKRVVNADDSWGKRIIEMYPDCVTYAKDSDAQ---VCTKNVKLFVNKN 289

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q  +   GK  +    +PG F +YN+L AA  CI++GI+   + + LE L  VPGRFE V
Sbjct: 290 QFELWYNGKKEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIV 349

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +N R   I +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +
Sbjct: 350 ESNERF-TIVIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRM 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD  IVT DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+A
Sbjct: 409 ADFVIVTSDNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLA 468

Query: 466 GKGHETVHIVTN 477
           GKGHET  I+ +
Sbjct: 469 GKGHETYQILKD 480


>gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 492

 Score =  286 bits (733), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 181/485 (37%), Positives = 272/485 (56%), Gaps = 30/485 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           + W E ++  +  DSR ++ G IFVAI G   DGH FI + I +   A++V+       F
Sbjct: 19  INWAELEVTGIEQDSRQVKPGNIFVAIKGFTADGHDFIEKVIEK-KPALIVAEEERPGIF 77

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
                     L+V ++R+ L+L A   YG   E I  + VTGT+GK++V   V  + +  
Sbjct: 78  GVNH------LLVKDSRQALALLARTFYGNPTEKISVIGVTGTNGKTTVTHLVTSLLESF 131

Query: 141 GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           G   ++ G   TI +   D  L    TTP  + L +  + +    V+HV++E SSH L Q
Sbjct: 132 G---YKTGLIGTIYNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHVAMEVSSHALVQ 188

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKE 255
            R+ GI    G FTNL +DH+D+H++ + YFNAK  LF+ L  +++ P +I  DD Y + 
Sbjct: 189 KRVLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKILAEQKALPGVINKDDFYGQR 248

Query: 256 VMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++K   +     ++ G + +  I  K V   ++    T+  + +++     L G F VYN
Sbjct: 249 ILKEVAHP---FVTYGIKEQADITAKNVELTNSGTAFTLCYQEEEYPVKVKLLGLFNVYN 305

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A G  + +G     ++++L  L+ VPGRFE +    +   + VDYAHT + LE ILK
Sbjct: 306 ILAAVGTLLTLGFSLPDIVKNLPLLNPVPGRFELI-DEGQDFAVIVDYAHTPDGLENILK 364

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           + R IT GR+I VFGCGGDRD+ KRP MGKI+  LADI I+T DNPR+EDPE I  EI  
Sbjct: 365 SARAITPGRVIAVFGCGGDRDKTKRPKMGKISATLADITIITSDNPRTEDPEAIINEIEK 424

Query: 435 G----IPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G    +PG ++++ +R +AI+TA+ +    D +V+AGKGHE   I+  G  K   D  ++
Sbjct: 425 GFFDALPGKYLKEVDRKKAIKTALLLAKPGDTVVIAGKGHEDYQII--GTTKYPFDDRVV 482

Query: 490 -REIL 493
            REIL
Sbjct: 483 AREIL 487


>gi|190570599|ref|YP_001974957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019149|ref|ZP_03334956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190356871|emb|CAQ54245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995258|gb|EEB55899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 520

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 180/495 (36%), Positives = 283/495 (57%), Gaps = 42/495 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA--------IAQGAEAIVVS------ 74
           +I  V+ + + ++ G++FV +    ++    +P          + QGA+  V+       
Sbjct: 20  EIKGVTCNPKRVKEGYLFVCVSERSKEHVTCLPNGCVHNCVDVVIQGAKKDVIPVLRHWD 79

Query: 75  ------SAYSLQDF-------SATIRSNTP---ILVVDNTRKFLSLFASRLYG-KHPENI 117
                 + ++ Q +       SAT  ++TP   +L   + +   S   SR Y  K P+ +
Sbjct: 80  PENLIVNKHTRQLYNENWIPVSATRMTSTPSFAVLYHSDPQGIYSEIVSRFYQFKQPKYV 139

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AVTGT+GK+SV  F +QI Q +  S   +G  + +++  +DN LTTPS   L   L  +
Sbjct: 140 AAVTGTNGKTSVVEFCRQIWQDNVASIGTLG--TCVNNNRKDNSLTTPSADDLYSTLRDI 197

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +++ V H+++EASSHG+DQ+R+ G++L A +FTN  +DH+DYH++   YF AK RLF+E+
Sbjct: 198 NNKNVEHLALEASSHGIDQYRIHGLRLNAAAFTNFSQDHLDYHKSIDEYFEAKKRLFDEV 257

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPKE  AI+ AD     E++  A   G +V++ G +   I L K     N Q +TI +  
Sbjct: 258 LPKEKTAILNADIGEYGELLNIAEKRGNKVITYGKKNSDITLLKQIPTANGQYLTIQIGD 317

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + ++  FP+ G+FQ YN L A G+ I+ G+D   +   ++KL    GR E V T +    
Sbjct: 318 EIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQRMC--IDKLASPSGRMEKVNTFA---- 371

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +VDYAHT ++L+  L +++   + +I++VFGCGG+RDQ KR  MGKIA  LA   IVTD
Sbjct: 372 -FVDYAHTPSALKQALLSLKWHFNKKIVLVFGCGGNRDQTKRAEMGKIAQMLAGKVIVTD 430

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVT 476
           DNPR EDP KIR +I+   P  +E G+R +AI   I + + ++ +L+VAGKGHE   I+ 
Sbjct: 431 DNPRDEDPGKIRHDILLHCPDALEIGDRKKAIEKGINIAHDENMILLVAGKGHERFQIIE 490

Query: 477 NGEKKMSVDCDIIRE 491
               + S D ++IRE
Sbjct: 491 GQSLEFS-DVEVIRE 504


>gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 484

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 176/482 (36%), Positives = 279/482 (57%), Gaps = 35/482 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I+ V+ DSR ++   IF+ I G   DGH +I +AI  GA  I+      +QD    +
Sbjct: 20  DKEISSVNYDSRKVKKSDIFICIKGYATDGHKYIQKAIENGASVII------MQDDIEVV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N  ++ V +TRK L+L     Y    +   I+ +TGT+GK++ A  ++ I + +G   
Sbjct: 74  NKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGK-- 131

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++G   TI+++  + +L    TTP  + L +  + + ++GV +  +E SSH L+  R+ 
Sbjct: 132 -KVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVSSHSLELDRVY 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+    G FTNL RDH+D+H+T + Y+N+K +LF+    + +  II  DD Y K+V+K  
Sbjct: 191 GVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFK----RSNIRIINNDDNYGKQVIKDL 246

Query: 261 HNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +    + +   S+     F    +     N     +++E K+ +F+  +PGE+ +YNAL 
Sbjct: 247 NKLKAKNIYEYSIREDSNFKAFDEKMGSKN-ISFKVNLE-KEEEFILSIPGEYNIYNALG 304

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNI 376
           A G C  + I    + E + K+ +VPGR E   TN +    I +DYAHT + L+ IL+  
Sbjct: 305 AIGACYKLNIPMEAIREGINKV-IVPGRCERTATNYNLPYDIIIDYAHTPDGLQNILETA 363

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R  T GR+I +FGCGGDRD+ KRP MGKI  D+ADIAIVT DNPRSE+P KI  +I+ GI
Sbjct: 364 RGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDNPRSEEPMKIIEDILVGI 423

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIRE 491
                  IE  NR +AI+ A+++  + DV+V+AGKGHET  I+   +K +  D  +I+++
Sbjct: 424 EKDNYEVIE--NRKDAIKKAMDIAKENDVIVIAGKGHETYQILK--DKTIHFDEREIVKQ 479

Query: 492 IL 493
           IL
Sbjct: 480 IL 481


>gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
 gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
          Length = 476

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 178/445 (40%), Positives = 249/445 (55%), Gaps = 16/445 (3%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R +  G IF A  G + +G  FI  A+  GA A+V     +++  +  I S+ P    
Sbjct: 25  DHRKVAPGTIFGAFQGARVNGEDFIADAVRSGAIAVVTRPGVTVEG-AVHIASDEP---- 79

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
              R   +  A+  +   P   +AVTGT+GK+S     +Q+ + +G  +  IG   T+  
Sbjct: 80  ---RAAFAQLAAAFFAPFPATAVAVTGTNGKTSTVEMTRQLWRMAGHHAASIG---TLGV 133

Query: 156 FAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
              D R    LTTP  +     ++ L+ +GVTH++ EASSHGL Q+R +G+++ A +FTN
Sbjct: 134 TTADERTYTGLTTPDVVTFLSNVAGLAREGVTHLAFEASSHGLTQYRTEGLEVSAAAFTN 193

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH    AY  AKMRLF E+L     A+++ADD  S  V+  A   G R+++VG
Sbjct: 194 LSRDHLDYHGDMGAYLAAKMRLFSEVLSPTGTAVVWADDVQSGRVIDLARARGNRLMTVG 253

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +G  + L +       Q + I  E G       PL G +Q  NALV+AGL +A G D  
Sbjct: 254 TRGSTLKLVERHPTLLGQGLVIEDEHGTIHKVQLPLIGAYQAANALVSAGLVLATGGDVT 313

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             L +L +L  V GR E       G  +YVDYAHT ++LE  +  ++    GR+IVVFG 
Sbjct: 314 TTLANLSRLQPVRGRLERAAIARSGAPVYVDYAHTPDALEAAIAALKPHAGGRLIVVFGA 373

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGDRD GKR  MG++A   AD  IVTDDNPR+EDP  IR +++ G  G IE G+R EAI 
Sbjct: 374 GGDRDPGKREAMGQVASMQADRVIVTDDNPRTEDPAAIRTQVMRGATGAIEIGDRREAIA 433

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIV 475
            AI     QD++++AGKGHE   IV
Sbjct: 434 AAIAEAGGQDIVLIAGKGHEQGQIV 458


>gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum H04402 065]
          Length = 483

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 275/474 (58%), Gaps = 42/474 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M+  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+ IV      L+D 
Sbjct: 15  MKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEDL 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139
           S     +  I+ V ++RK L++ +S  YG   KH + I+ +TGT+GK++    ++ I ++
Sbjct: 73  S--YYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +G   +++G   TI+++  + ++    TTP  I L K    +  + V +  +E SSH L 
Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCVMEVSSHSLY 186

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I  DD+Y ++
Sbjct: 187 LDRVYGVEFKESIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306
           V+K+A   G ++ + G       L+K C +   + + +   G +FD +F          +
Sbjct: 243 VLKKA--LGNKI-TYG-------LEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N + G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+EDP
Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +
Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465


>gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
 gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
          Length = 489

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 177/455 (38%), Positives = 265/455 (58%), Gaps = 4/455 (0%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           + R+ ++  ++ DSR ++ G +F A+ G+   G  FI  A+ QGA AI+     +    +
Sbjct: 12  KGRDPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTDRKGAEIAAA 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             + ++  ++V ++ R  L+  A+  +   PE ++AVTGTSGK+SVASF +QI Q  G  
Sbjct: 72  ELVGADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTRQIWQALGHK 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  +G       +      TTP PI L + L+  ++ GVTH ++EASSHGLDQ RLDG++
Sbjct: 132 AISLGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGLDQRRLDGVR 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L AG+FTN  +DH+DYH+    YF AK  LF+ +L + + A+I  DD   +++ + A   
Sbjct: 192 LKAGAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGRQMAQIAGER 251

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           G ++ ++G + +   L+ +   ++   Q +     G+       L G FQ  N L AAGL
Sbjct: 252 GLKLTTIG-KDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAENVLAAAGL 310

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            IA G ++  V+E L  L  V GR E       G  ++VDY+H   +L   L+++R    
Sbjct: 311 AIAAGDEAPRVIETLPGLTTVRGRMELAAVRENGAAVFVDYSHKPGALASALQSLRPHVM 370

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440
           GRI+VVFG GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IRAE++ G  P  I
Sbjct: 371 GRIVVVFGAGGDRDRLKRPLMGEAARQFADVVYVTDDNPRSEDPAAIRAEVMAGAGPDAI 430

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           E G+R EAI   ++ L   D L++AGKGHET  I+
Sbjct: 431 EVGDRAEAILRGVDALQPGDALLIAGKGHETGQII 465


>gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
          Length = 490

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 190/495 (38%), Positives = 266/495 (53%), Gaps = 20/495 (4%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            PEL+ +  +    P   R   I+ +++DSR    G IF A+ G   DG  +IPQA AQG
Sbjct: 3   LPELLRRAGLDIALPATARACDIHGITADSRQAGPGMIFAALRGTHRDGRAYIPQAHAQG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A+++ +     D   T   +   LV  + R  L+  A  L  + P +I A+TGT+GK+
Sbjct: 63  AAAVLLEA-----DPGFTPPPDATYLVAADARAALARIARALTPRVPAHIAAITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTH 184
           S A F++QI     L +  IG    ++     +    LTTP  + L   L  ++  GV H
Sbjct: 118 STAEFLRQIWTVQALPAGTIGTLGAVAPCPLPDCGPVLTTPDSVGLMALLGAMAQAGVEH 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++EASSHGL+Q RLDG+   A  F+NL RDH+DYH T + Y  AK+RLF+ +LP+   A
Sbjct: 178 VAIEASSHGLEQRRLDGLAPYAAGFSNLTRDHLDYHGTTEHYRAAKLRLFDTVLPEGGIA 237

Query: 245 IIYAD--DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              AD  DA    +   A   G  + + G +G  + L         Q + +       + 
Sbjct: 238 AFNADMDDATCAALRAIAARRGLVLRTTGLRGGTLRLLDARPTPAGQVLHVMTPAGAREM 297

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             PL G FQV N L+A   C   G D       +  L +LH V GR E       G   Y
Sbjct: 298 EVPLVGRFQVDNMLLA---CAMAGRDEGAADHAVSLLPRLHGVRGRMERAAVLDSGAAAY 354

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT +++E +L ++R  T GR+++V G GGDRD+GKRP+MG+IA  LAD  IVTDDN
Sbjct: 355 VDYAHTPDAIERLLCSLRPHTPGRLVIVMGAGGDRDRGKRPVMGEIATRLADRVIVTDDN 414

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PR+E P  IRA I+   PG IE G+R +AI   + +L   DV+VVAGKGHE    + +  
Sbjct: 415 PRTEQPAAIRAAIMAAAPGAIEIGDRRQAIAAGLGLLGPGDVMVVAGKGHEQGQTIGHDV 474

Query: 480 KKMSVDCDIIREILG 494
                D  +IR++LG
Sbjct: 475 LPFD-DATVIRDLLG 488


>gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
 gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
          Length = 483

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 177/488 (36%), Positives = 267/488 (54%), Gaps = 49/488 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N++  DSR +  G +FVAI G   DGH FI +AI  GA+ I+ S      + S  I+ 
Sbjct: 22  EVNKIEYDSRKVLKGDVFVAIEGFNVDGHKFINKAIENGAKVIICSKNTEFYENSTYIK- 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 V+NTRK L++ AS  YG +P N   ++ +TGT+GK++    ++ I + +G ++ 
Sbjct: 81  ------VENTRKALAIMASNFYG-NPSNEIKLIGITGTNGKTTSTYMIKSILEHAGCNTG 133

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG   TI++F  + ++    TTP  + L +    ++ + + +  +E SSH L   R+ G
Sbjct: 134 LIG---TIANFIGEKKIKAERTTPESLELQEMFKKMNDKNIEYCIMEVSSHSLSLDRVYG 190

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K   G FTNL +DH+D+H+T + Y+ AK+ +F         +II  DD Y   ++K   
Sbjct: 191 LKFSQGIFTNLTQDHLDFHKTFENYYKAKLSMFHNA----KNSIINIDDFYGDRMLKDIP 246

Query: 262 NAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311
               ++  S   Q               + +     G +FD ++          +PG + 
Sbjct: 247 KTSTKITYSTERQADLF----------AENIVNHSRGAEFDLIYKETMIHINLSIPGIYN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLE 370
           VYNAL +A  C+  GI    V E LE + VVPGR E V    + G  + VDYAHT + LE
Sbjct: 297 VYNALCSAAACLEEGISIEKVKEGLENV-VVPGRCENVTKKYNLGFDVIVDYAHTPDGLE 355

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            IL   +  T GR+I VFGCGGDRD+ KRPIMGKI  +L+DIAI+T DNPR+E+P  I  
Sbjct: 356 NILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSNLSDIAIITSDNPRTEEPMSIID 415

Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVD 485
           +++ GI    +I   NR EAI+ A++M  K DV+VVAGKGHE   I+ +      +  V 
Sbjct: 416 DVVSGIDKDNYIVVENRKEAIKQAMKMAKKDDVIVVAGKGHEDYQILKDKVIHFDEREVI 475

Query: 486 CDIIREIL 493
            DI++E+ 
Sbjct: 476 ADIVKELF 483


>gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 495

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 182/452 (40%), Positives = 258/452 (57%), Gaps = 21/452 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R +  G +F A  G K +G  FI  A+A GA A+VV     ++  +  I    P    
Sbjct: 28  DHRKVAPGTVFGAFAGAKVNGEDFIDAAVAAGAIAVVVRPGAKVEG-ALQIADEAP---- 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------P 149
              RK  +  A++ +   P+ I+AVTGT+GK+S     +Q+ +  G  +  IG      P
Sbjct: 83  ---RKAFAEIAAQYFTPAPDTIVAVTGTNGKTSTVEMTRQLWRMLGERAASIGTLGVTTP 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             ++S+      LTTP  +     LS L+ +GVTH++ EASSHGLDQ+R  G +++AG+F
Sbjct: 140 DESVSTG-----LTTPDIVTFHANLSGLAREGVTHIAYEASSHGLDQYRNYGARVVAGAF 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVL 268
           TN  RDH+DYH++ QAYF AKMRLF+E++     A+I+AD   ++ +   RA   G R+ 
Sbjct: 195 TNFSRDHLDYHESMQAYFEAKMRLFDEVIADGGTAVIWADGGEWADKARTRAEKRGLRIF 254

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +VG QG  I L         Q V I+  G       PL G++Q  NAL AA L +A G D
Sbjct: 255 TVGPQGDDICLIGQEPSQLGQSVEIARNGDRRTIRLPLIGQYQAANALTAAALALASGAD 314

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A + + + +L  V GR E       G  +YVDYAHT ++LE  +  +R   +GR+IVVF
Sbjct: 315 EARLWDAVGRLQPVRGRLERAVITQSGAPVYVDYAHTPDALEAAIAALRPHVNGRLIVVF 374

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIE 447
           G GGDRD GKR  MG++A  LAD+ IVTDDNPR EDP  IR  ++ G      E   R E
Sbjct: 375 GAGGDRDTGKRGPMGEVASRLADVVIVTDDNPRGEDPADIRRAVMQGAGENTREVAGRRE 434

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           AI  AIE++ + D++++AGKGHE   I+ +G+
Sbjct: 435 AIAQAIEIIGRDDIVLIAGKGHEEGQIIGSGD 466


>gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium kluyveri DSM 555]
 gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016]
 gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555]
 gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 485

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 174/458 (37%), Positives = 254/458 (55%), Gaps = 27/458 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I E+  DSR ++ G +FV I G   DGH +I  A   GA AIV+S      DF      +
Sbjct: 23  IGEIQYDSRKVKTGDLFVCIAGYVTDGHKYIESAFKNGAAAIVLSKKV---DFIP----D 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++ V +TRK L+L +S  Y    E+  I+ +TGT+GK++    V+ I + +G   +++
Sbjct: 76  CTVIEVKDTRKALALMSSNYYDNPAEDMKIIGITGTNGKTTSTFMVKSILETAG---YKV 132

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TIS++  + ++    TTP  + L K    +   GV +  +EASSH L   R+ G++
Sbjct: 133 GVVGTISNYIGNKKIPSHRTTPESLELQKLFKEMVDDGVDYCVMEASSHSLYLDRVYGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+D+H+T + Y+ +K+ LF+  +     ++I  DD Y + V + A   
Sbjct: 193 FCQALFTNLTRDHLDFHKTFEEYYKSKIILFKNTVN----SVINIDDKYGERVYEDAKG- 247

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             + L+         +     IH++     IS EG        +PG++ V NAL +AG+C
Sbjct: 248 --KKLTYAIDKNADLMADNLKIHSRGVNFNISYEGNTKHINLNIPGKYNVMNALGSAGVC 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           +A GID   V + LE +  VPGR E V  + + G  + VDYAHT + LE ILK  R  T 
Sbjct: 306 LAEGIDLNTVKKGLEDMPSVPGRCEIVTKSYNLGYEVVVDYAHTPDGLENILKCAREFTK 365

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GF 439
           G++I VFGCGGDRD  KRPIMG I    +D A+VT DNPR E+P  I  +I+ GI    +
Sbjct: 366 GKLISVFGCGGDRDSTKRPIMGNIGTKFSDFAVVTSDNPRGEEPMAIIKDILTGIKKNNY 425

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I   NR EAI+ A+EM    DV+V+AGKGHE   I+ +
Sbjct: 426 IVIENRKEAIKKAMEMAETGDVVVIAGKGHEDYQILKD 463


>gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 483

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 278/483 (57%), Gaps = 42/483 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+ IV 
Sbjct: 6   ILKSLEYSIIKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVC 65

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVA 130
                L+D S     +  I+ V ++RK L++ +S  YG   KH + I+ +TGT+GK++  
Sbjct: 66  EK--DLEDLS--YYKDCTIIKVPDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTST 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186
             ++ I +++G   +++G   TI+++  + ++    TTP  + L K    +  + V +  
Sbjct: 121 FMMKAILEKAG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP- 305
             DD+Y ++V+K+A   G ++ + G       ++K C +   + + +   G +FD +F  
Sbjct: 234 NIDDSYGEKVLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKN 282

Query: 306 --------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356
                   +PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N + G 
Sbjct: 283 EKETIALNIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGY 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T
Sbjct: 343 DVIVDYAHTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+EDP+ I  +++ GI    +I    R +AIR A+EM  + DV+VVAGKGHE   I
Sbjct: 403 SDNPRTEDPKLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEMAKENDVIVVAGKGHEDYQI 462

Query: 475 VTN 477
           + +
Sbjct: 463 LKD 465


>gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 486

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 178/499 (35%), Positives = 279/499 (55%), Gaps = 34/499 (6%)

Query: 10  DFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   ++N L    +Q  E  +IN+++ DSR +    +FV + G   DGH +  +A+  GA
Sbjct: 2   NLKSILNGLDYELLQGTEDVQINKINYDSRKVCKDDLFVCVKGYATDGHKYAEKAVLNGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
           + IV+    ++ D   TI      +   +TRK L+L  +  YG   E   I+ +TGT+GK
Sbjct: 62  KVIVIQDDVNIDDKEITI------VKCSDTRKALALMGANYYGNPSEKMKIIGITGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           ++ A  ++ I + +G    ++G   TI+++    ++    TTP  + L +    +  +GV
Sbjct: 116 TTTAFMIKDILECAGK---KVGLIGTIANYICGEKIHTERTTPESLELQELFGEMVEKGV 172

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSH L   R+ G+K   G FTNL RDH+D+H+T + Y++AK +LFE    K  
Sbjct: 173 EYCVMEVSSHSLALDRVYGVKFECGIFTNLTRDHLDFHKTFENYYDAKFKLFERSCIK-- 230

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
             +I  DD Y  +V+K         +   SV     +    ++    + K +V +  E  
Sbjct: 231 --VINVDDNYGIQVLKDCQKLNAENIYSFSVKSDSDYKAYDELMGSRDIKFKVVLDEEE- 287

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGR 357
             +F+  +PGE+ +YNAL A G+C  +GI    + E +E   +VPGR E VG   +    
Sbjct: 288 --EFILGIPGEYNIYNALGAIGVCHKMGIAIEAIKEGIENA-LVPGRCERVGKEYNLPYE 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +DYAHT + LE ILK  +  T G++I +FGCGGDRD+ KRP MGKI +D+AD+A++T 
Sbjct: 345 IIIDYAHTPDGLENILKTAKAFTKGKLIAIFGCGGDRDKVKRPQMGKIGIDIADLAVITS 404

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPRSEDP  I  +I  G+    +I   NR +AI+ AIE+  K DV+V+AGKGHET  I+
Sbjct: 405 DNPRSEDPMAIIEDIKAGLDKDNYIIIENRHDAIKKAIELAEKDDVIVIAGKGHETYQIL 464

Query: 476 TNGEKKMSVD-CDIIREIL 493
              +K +  D  ++++EIL
Sbjct: 465 K--DKTIHFDEREVVKEIL 481


>gi|296537028|ref|ZP_06899021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296262644|gb|EFH09276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 425

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 236/414 (57%), Gaps = 13/414 (3%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L   + R+ L+  A+  +G+ P   +AVTGT+GK+S   F++QI   +G  +  +G  
Sbjct: 14  PLLTDPDPRRALARMAAAFHGQQPAIAVAVTGTNGKTSTVDFLRQIWTLAGDRAASLGTL 73

Query: 151 S-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                 F +   LTTP P+ L + L+ L+  GV  V++EASSHGL+Q RLDG++L A  F
Sbjct: 74  GLRAPGFPETPSLTTPDPVLLHETLAGLARAGVQKVALEASSHGLEQRRLDGLRLTAAGF 133

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-----KEVMKRAHNAG 264
           +NL RDH+DYH    AY  AK+RLF+ LL +   A+  AD A       + V +R H   
Sbjct: 134 SNLTRDHLDYHGGMAAYAAAKLRLFDTLLDQGDGAVANADMAPEMLEALRAVARRRH--- 190

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R+ +VG  G+ I L +     + Q + +++ G+  + L  LPG FQ  N ++AAGL ++
Sbjct: 191 LRLATVGEAGEAIRLLRHTPRPDGQALELTLYGRRAELLLALPGRFQADNVMLAAGLAVS 250

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+ +  V   L +L  V GR E       G  +YVDYAHT ++LE +L  +R    GR+
Sbjct: 251 AGMPADKVAGLLPRLTGVRGRMELAARLPNGAAVYVDYAHTPDALERLLTALRPHAEGRL 310

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441
            VVFG GGDRD GKRP+MG++   LAD AI+TDDNPR EDP  IRA +  G+ G     E
Sbjct: 311 HVVFGAGGDRDGGKRPLMGEVCARLADHAILTDDNPRGEDPAAIRAAVRAGMAGGAAITE 370

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            G+R  AI   +  L   DVL VAGKGHE    +  G      D + +R + G+
Sbjct: 371 IGDRAAAIEAGLAALGPGDVLAVAGKGHEPGQTI-QGVTHPFDDAETVRRLAGV 423


>gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 484

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 267/465 (57%), Gaps = 32/465 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I+ ++ DSR +    IF+ I G   DGH +I +AI  GA  I+      +QD    +
Sbjct: 20  DKEISSINYDSRKVNKSDIFICIKGYATDGHKYIQKAIENGASVII------MQDDIEVV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N  ++ V +TRK L+L     Y    +   I+ +TGT+GK++ A  ++ I + +G   
Sbjct: 74  NKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGK-- 131

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++G   TI+++  + +L    TTP  + L +  + + ++GV +  +E SSH L+  R+ 
Sbjct: 132 -KVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVSSHSLELDRVY 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+    G FTNL RDH+D+H+T + Y+N+K +LF+    + +  II  DD Y K+V+K  
Sbjct: 191 GVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFK----RSNIRIINNDDNYGKQVIKDL 246

Query: 261 HNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +    + +   S+     F    +     N     +++E K+ +F+  +PGE+ +YNAL 
Sbjct: 247 NKLKAKNIYEYSIKEDSNFKAFDEKMGSKN-ISFKVNLE-KEEEFILSIPGEYNIYNALG 304

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNI 376
           A G C  + I    +   + K+ +VPGR E   TN +    I +DYAHT + L+ IL+  
Sbjct: 305 AIGACYKLNIPMEAIKNGINKV-IVPGRCERTATNYNLPYDIIIDYAHTPDGLQNILETA 363

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R  T GR+I +FGCGGDRD+ KRP MGKI  D+ADIAIVT DNPRSE+P +I  +I+ GI
Sbjct: 364 RGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDNPRSEEPMRIIEDILVGI 423

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                  IE  NR +AI+ A+++  + DV+V+AGKGHET  I+ +
Sbjct: 424 EKDNYEIIE--NRKDAIKKAMDIAKENDVIVIAGKGHETYQILKD 466


>gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 495

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 171/488 (35%), Positives = 267/488 (54%), Gaps = 33/488 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+DLI     E I+ +      + ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 10  LKLKDLI-----ENIDAMETNVKDF-DKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYI 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G HP     +
Sbjct: 64  DEAIKNGARLVVVDEFFD----TSKIEGKVDYIKTSNTRKALAVMSANFFG-HPSKDFLL 118

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK+S    ++ I +    +S ++G   TI +      +    TTP    L K 
Sbjct: 119 IGVTGTNGKTSTTFMIKSILE---ANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKL 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              + ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++L
Sbjct: 176 FWQMKNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKL 235

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F          ++ ADD++ K +++   +          Q   +  K +    NK Q  +
Sbjct: 236 F----GMSKKRVVNADDSWGKRIIEMYPDCVTYAKDSDAQ---VCAKNIKLFVNKNQFEM 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              GK  +    +PG F +YN+L AA  CI++GI+   + + LE L  VPGRFE V +N 
Sbjct: 289 WYNGKKEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNE 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           R   I +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  
Sbjct: 349 RF-TIVIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFV 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           IVT DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGH
Sbjct: 408 IVTSDNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKGH 467

Query: 470 ETVHIVTN 477
           ET  I+ +
Sbjct: 468 ETYQILKD 475


>gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 484

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 268/465 (57%), Gaps = 32/465 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I+ V+ DSR ++   +F+ I G   DGH +I +AI  GA  I+      +QD    +
Sbjct: 20  DKEISSVNYDSRKVKKSDVFICIKGYATDGHKYIQKAIENGASVII------MQDEIEVV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N  ++ V +TRK L+L     Y    +   I+ +TGT+GK++ A  ++ I + +G   
Sbjct: 74  NKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGK-- 131

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++G   TI+++  + +L    TTP  + L +  + + ++GV +  +E SSH L+  R+ 
Sbjct: 132 -KVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVSSHSLELDRVY 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+    G FTNL RDH+D+H+T + Y+N+K +LF+    + +  II  DD Y K+V+K  
Sbjct: 191 GVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFK----RSNIRIINNDDNYGKQVIKDL 246

Query: 261 HNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +    + +   S+     F    +     N     +++E K+ +F+  +PGE+ +YNAL 
Sbjct: 247 NKLKAKNIYEYSIKEDSNFKAFDEKMGSKN-ISFKVNLE-KEEEFILSIPGEYNIYNALG 304

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNI 376
           A G C  + I    +   + K+ +VPGR E   TN +    I +DYAHT + L+ IL+  
Sbjct: 305 AIGACYKLNIPMEAIKNGINKV-IVPGRCERTATNYNLPYDIIIDYAHTPDGLKNILETA 363

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R  T GR+I +FGCGGDRD+ KRP MGKI  D+ADIAIVT DNPRSE+P +I  +I+ GI
Sbjct: 364 RGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDNPRSEEPMRIIDDILVGI 423

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                  IE  NR +AI+ A+++  + DV+V+AGKGHET  I+ +
Sbjct: 424 EKDNYEVIE--NRKDAIKKAMDIAKENDVIVIAGKGHETYQILKD 466


>gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 483

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 169/474 (35%), Positives = 275/474 (58%), Gaps = 42/474 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+ IV      L+D 
Sbjct: 15  IKENKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEDL 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139
           S     +  I+ V ++RK L++ +S  YG   KH + I+ +TGT+GK++    ++ I ++
Sbjct: 73  S--YYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +G   +++G   TI+++  + ++    TTP  + L K    +  + V +  +E SSH L 
Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLY 186

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I  DD+Y ++
Sbjct: 187 LDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306
           V+K+A   G ++ + G       ++K C +   + + +   G +FD +F          +
Sbjct: 243 VLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N + G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+EDP
Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +
Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465


>gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 483

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 169/474 (35%), Positives = 275/474 (58%), Gaps = 42/474 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+ IV      L+D 
Sbjct: 15  IKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEDL 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139
           S     +  I+ V ++RK L++ +S  YG   KH + I+ +TGT+GK++    ++ I ++
Sbjct: 73  S--YYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +G   +++G   TI+++  + ++    TTP  + L K    +  + V +  +E SSH L 
Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLY 186

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I  DD+Y ++
Sbjct: 187 LDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306
           V+K+A   G ++ + G       ++K C +   + + +   G +FD +F          +
Sbjct: 243 VLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N + G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+EDP
Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +
Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465


>gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum F str. 230613]
          Length = 483

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/474 (35%), Positives = 275/474 (58%), Gaps = 42/474 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+ IV      L+D 
Sbjct: 15  IKEYKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEDL 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139
           S     +  I+ V ++RK L++ +S  YG   KH + I+ +TGT+GK++    ++ I ++
Sbjct: 73  S--YYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +G   +++G   TI+++  + ++    TTP  + L K    +  + V +  +E SSH L 
Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLY 186

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I  DD+Y ++
Sbjct: 187 LDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306
           V+K+A   G ++ + G       ++K C +   + + +   G +FD +F          +
Sbjct: 243 VLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N + G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+EDP
Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +
Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465


>gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 500

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 173/490 (35%), Positives = 269/490 (54%), Gaps = 37/490 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+DLI     E I+ L      + ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 15  LKLKDLI-----ENIDVLETNVGDF-DKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +  HP     +
Sbjct: 69  DEAIQNGARLVVVDEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFA-HPSKDFLL 123

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S    ++ I + +G     IG   + I S   + + TTP    L K    
Sbjct: 124 IGVTGTNGKTSTTFMIKSILEANGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQ 183

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + S+GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF+AK++LF  
Sbjct: 184 MKSEGVDSVVMEVSSHSLELFRVYACDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLF-- 241

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQV 291
                   ++ ADD++ K +++   +  C   +            VCA +     NK Q 
Sbjct: 242 --GMSKKRVVNADDSWGKRIIEMYPD--CITYAKDSDAN------VCAQNIKLFVNKNQF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    K  + L  +PG F +YN+L AA  CI +GI+   + + LE+L  VPGRFE V +
Sbjct: 292 DLYYNNKKENILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVES 351

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N +   + +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD
Sbjct: 352 NQKF-TVVIDYAHTPDGLLNLMKTVNEVADGRKVLLFGCGGDRDRTKRPIMGEIAGKMAD 410

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             IVT DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGK
Sbjct: 411 FVIVTSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGK 470

Query: 468 GHETVHIVTN 477
           GHET  I+ +
Sbjct: 471 GHETYQILKD 480


>gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 486

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 170/485 (35%), Positives = 266/485 (54%), Gaps = 27/485 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DLI ++   L   +  F     ++ I +++ +S++ + G +FV I G K DGH +I
Sbjct: 1   MKLLDLI-ENIDVLETNVGDF-----DKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G HP     +
Sbjct: 55  NEAIQNGACLVVVDEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFG-HPSKDFLL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S    ++ I +  G     IG   + I S   + + TTP    L K    
Sbjct: 110 IGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQ 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + S+GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF  
Sbjct: 170 MKSEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-- 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   ++ ADD + K +++   ++         Q   +  + +    NK Q  +   
Sbjct: 228 --GMSKKRVVNADDMWGKRIIEMYPDSVTYAKDSDAQ---VFARNIKLFVNKNQFELWYN 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+  +    +PG F +YN+L A+  CI++GI    + + LE L  VPGRFE V +N +  
Sbjct: 283 GEKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQKF- 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT + L  ++K +  +T GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT
Sbjct: 342 TVVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET 
Sbjct: 402 SDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETY 461

Query: 473 HIVTN 477
            I+ +
Sbjct: 462 QILKD 466


>gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 486

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 169/485 (34%), Positives = 266/485 (54%), Gaps = 27/485 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DLI ++   L   +  F      + I +++ +S++ + G +FV I G K DGH +I
Sbjct: 1   MKLKDLI-ENIDVLETNVGDFG-----KDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G HP     +
Sbjct: 55  NEAIQNGACLVVVDEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFG-HPSKDFLL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S    ++ I +  G     IG   + I S   + + TTP    L K    
Sbjct: 110 IGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSIEIEAQHTTPESYDLQKLFWQ 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF  
Sbjct: 170 MKNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-- 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   ++ ADD + K +++   ++         Q   +  + +    NK Q  +   
Sbjct: 228 --GMSKKRVVNADDMWGKRIIEMYPDSVTYAKDSDAQ---VFARNIKLFVNKNQFELWYN 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+  +    +PG F +YN+L A+  CI++GI    + + LE L  VPGRFE V +N +  
Sbjct: 283 GEKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQKF- 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT + L  ++K +  +T GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT
Sbjct: 342 TVVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET 
Sbjct: 402 SDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETY 461

Query: 473 HIVTN 477
            I+ +
Sbjct: 462 QILKD 466


>gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
 gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
          Length = 495

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 172/490 (35%), Positives = 269/490 (54%), Gaps = 37/490 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+DLI ++   L   +  F     ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 10  LKLKDLI-ENIDVLETNVGDF-----DKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYI 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
            +AI  GA  IVV   +     ++ I+     +   NTRK L++ ++  +  HP     +
Sbjct: 64  DEAIQNGARLIVVDEFFD----TSKIKGKIDYIKTSNTRKALAVMSANFFA-HPSKDFLL 118

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S    ++ I +  G     IG   + I S   + + TTP    L K    
Sbjct: 119 IGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQ 178

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF+AK++LF  
Sbjct: 179 MRNEGVDSVVMEVSSHSLELFRVYASDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLF-- 236

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQV 291
                   +I ADD++ K +++   +  C   +            VCA +     NK Q 
Sbjct: 237 --GMSKKRVINADDSWGKRIIEMYPD--CMTYAKDSNAT------VCARNIKLYVNKNQF 286

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    K  + L  +PG F +YN+L AA  CI +GI+   + + LE+L  VPGRFE V +
Sbjct: 287 DLWYNDKKEEILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVES 346

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N +   + +DYAHT + L  +++ +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD
Sbjct: 347 NEKF-TVVIDYAHTPDGLLNLMRTVNEVADGRKVLLFGCGGDRDRAKRPIMGEIAGRMAD 405

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             IVT DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGK
Sbjct: 406 FVIVTSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGK 465

Query: 468 GHETVHIVTN 477
           GHET  I+ +
Sbjct: 466 GHETYQILKD 475


>gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
 gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
          Length = 506

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 189/517 (36%), Positives = 273/517 (52%), Gaps = 71/517 (13%)

Query: 14  LINQL--SIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           L+++L  S+ P++     + +I  +  DSR ++AG +F A+ G   DG+ F+  AI  GA
Sbjct: 2   LLSELTKSVMPLEVGGGADPEIEGLYYDSRRVKAGGLFFALKGVASDGYSFVDTAIKAGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A+VV    + Q          P + V + R  +S  A+  YG     +  + +TGT+GK
Sbjct: 62  VAVVVDGTLTPQ--------GIPWVRVADARLAMSRMAAAFYGFPTATLPLVGITGTNGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           +++   ++ I ++SG+ +  +G   T++   ++  +    TTP  + L + L  L   G 
Sbjct: 114 TTITYLIESILEKSGIPAAVLG---TVNYRFREKAIPAPNTTPESVDLQRTLRELIDMGA 170

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---- 238
             V +E SSH L Q R+DG     G FTNL RDH+DYH   ++YF +KMRLF ELL    
Sbjct: 171 KGVVMEVSSHALQQRRVDGCCFDVGVFTNLTRDHLDYHLDMESYFQSKMRLFSELLAADR 230

Query: 239 --PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             PK   A++  DD Y   +++    A C VLS G  G   H++        ++V  SV 
Sbjct: 231 IKPKRC-AVVNIDDPYGPRIVQ---GAACPVLSYGISGN-AHVRA-------ERVVFSVA 278

Query: 297 GKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           G     + P         L G F +YN L A    IA+ +    + E LE    VPGR E
Sbjct: 279 GISCVLVTPQGQINLHSELLGRFNLYNILAATAAGIAMELPLDAIHEGLEHHPQVPGRVE 338

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V  N RG  I VDYAHT ++LE +L+ +  +  GRII VFGCGGDRD+GKRP+MG+IA 
Sbjct: 339 RV-ANDRGLTILVDYAHTGDALENVLRTLTELKKGRIITVFGCGGDRDRGKRPVMGEIAG 397

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------------GFIEKG-----NRIEA 448
             +D++I+T DNPRSEDPEKI A +  GI               GF EKG     +R EA
Sbjct: 398 RYSDLSIITSDNPRSEDPEKIIAGVREGIVPLGIREYGSEELRHGFSEKGYAAVESRREA 457

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           IR A+      D++++AGKGHE   I+  G +K   D
Sbjct: 458 IRLAVAAARPGDIVLLAGKGHEDYQII--GSEKHHFD 492


>gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 482

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 179/479 (37%), Positives = 265/479 (55%), Gaps = 38/479 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I E+  DSR +++G +FV I G   DGH +I +A   GA AIV+S              N
Sbjct: 23  IGEIQYDSREVKSGDVFVCIKGYVTDGHKYIDKAYKNGAAAIVISEEVE----------N 72

Query: 90  TP---ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
            P   ++ V +TRK L++ +S  Y    +   I+ +TGT+GK++    ++ I + +G   
Sbjct: 73  VPDCTVIKVKDTRKALAIISSNYYDNPSKKMKIIGITGTNGKTTSTFMMKSILETAG--- 129

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +++G   TI+++  + ++    TTP  + L K    +  +GV +  +E SSH L   R  
Sbjct: 130 YKVGLVGTIANYIGEKKIPSHRTTPESLELQKLFKQMVDEGVQYCVMEVSSHSLYLDRAY 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G++     FTNL RDH+D+H+T + Y+ AK+ LF+  +     ++I  DD Y  +V + A
Sbjct: 190 GVRFSEAIFTNLTRDHLDFHKTFENYYKAKLILFKNTIN----SVINIDDKYGDKVYEDA 245

Query: 261 HNAGCRVLSVGYQGKFIHLK-KVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              G ++       K   LK     IH++     I+  G+       +PG++ V NAL +
Sbjct: 246 --LGTKITYA--INKEADLKANDLNIHSRGANFNITYRGQTAHINLNIPGKYNVMNALGS 301

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIR 377
            G C+  GI   +V + LE ++ VPGR E V    + G  + VDYAHT + LE ILK  R
Sbjct: 302 IGACLCEGISLEVVKKGLESMNAVPGRCEIVTKGYNLGYEVIVDYAHTPDGLENILKTAR 361

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             T+GR+I VFGCGGDRD  KRPIMGKI  +L+D A++T DNPR E+P  I  EI++G+ 
Sbjct: 362 EFTTGRLIAVFGCGGDRDNTKRPIMGKIGTELSDFAVITSDNPRGEEPRAIIDEIVNGVE 421

Query: 438 GFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
               K   NR EAI+ AI M  K DV+VVAGKGHE   I+   +K +  D  +II EIL
Sbjct: 422 KDDYKVVENRKEAIKEAIHMAQKGDVIVVAGKGHEDYQILK--DKTIHFDEREIIAEIL 478


>gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 486

 Score =  277 bits (708), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 173/476 (36%), Positives = 265/476 (55%), Gaps = 27/476 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N+++ DSR      +FV + G   DGH +I +AI  GA+ IV+     ++D       
Sbjct: 22  EVNKINYDSRKAGNDDVFVCVKGYATDGHKYIEKAIENGAKVIVIQDDIEIKD------E 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           N  I+  ++TRK L+L  +  Y  +P +   I+ VTGT+GK++ A  ++ I + S   + 
Sbjct: 76  NITIIKCNDTRKALALMGANYYD-NPSSKIKIIGVTGTNGKTTTAFMIKHILEES---NK 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI++F  D ++    TTP  + L +  S +  +GV +  +E SSH L   R+ G
Sbjct: 132 KVGLIGTIANFIGDEKIHTERTTPESLELQELFSEMVDKGVEYCVMEVSSHSLALDRVYG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I+   G FTNL RDH+D+H+T + Y+ AK +LFE    +    I+  DD Y ++V+   +
Sbjct: 192 IEFQVGIFTNLTRDHLDFHKTFENYYKAKFKLFE----RSRIKIVNVDDNYGRQVISDLN 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320
           N  C  +           K        +++   +  K D  F+  +PGE+ +YNAL A  
Sbjct: 248 NLKCDDIYSFSVKSISDFKAFDEEMGSREIKFKLNLKEDEQFVLNIPGEYNIYNALGAIA 307

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTI 379
            C  +G+    +   +E + VV GR E V    + G  I +DYAHT + LE ILK  +  
Sbjct: 308 ACFKLGMPIKDIKSGIENV-VVLGRCERVAKEYNLGYEIIIDYAHTPDGLENILKTAKAF 366

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
           T GR+I VFGCGGDRD+ KRP MGKI+ D+ADI IVT DNPRSE+P  I  +I  GI   
Sbjct: 367 TKGRLISVFGCGGDRDKVKRPEMGKISTDIADITIVTSDNPRSEEPLSIIKDIEAGIDKD 426

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +    NR EAI+ +I++    DV+V+AGKGHET  ++ + E     + +I++EIL
Sbjct: 427 NYFVIENRKEAIKKSIDIALDNDVIVIAGKGHETYQVLKD-ETIHFDEREIVKEIL 481


>gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
 gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
          Length = 482

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 172/487 (35%), Positives = 276/487 (56%), Gaps = 43/487 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   DLSLILKSLEYSFVKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGK 126
            IV      L+D S     +  I+ V ++RK L++ AS  YG   KH + I+ +TGT+GK
Sbjct: 62  VIVCEK--DLEDLSC--YKDCTIIKVPDSRKALAIMASNYYGTPSKHIK-IIGITGTNGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           ++    ++ I +++G   +++G   TI+++  + ++    TTP  + L K    +  + V
Sbjct: 117 TTSTFMMKAILEKAG---YKVGLLGTIANYIGNKKIESNRTTPESLELQKLFKDMVDEKV 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+       
Sbjct: 174 DYCVMEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----Q 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            ++I  DD+Y ++V+K+A   G +V + G       ++K C +   + + +   G +FD 
Sbjct: 230 NSVINIDDSYGEKVLKKA--LGNKV-TYG-------VEKSCDL-KAENLHMHSRGVEFDT 278

Query: 303 LFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352
           +F          +PG++ +YNAL + G C+  GI    + E L  + V PGR E V  N 
Sbjct: 279 IFKNEKETIALNIPGKYNIYNALGSIGACLLEGISLQTIKEALGDISV-PGRCEIVTKNY 337

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAHT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  DL+DI
Sbjct: 338 DLGYDVIVDYAHTPDGLENILATAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSDLSDI 397

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI+T DNPR+EDP  I  +++ GI    +I    R +AI+ A+E+  + DV+VVAGKGHE
Sbjct: 398 AIITSDNPRTEDPSLIIKDVLEGIEKDNYIVVEGRRDAIKKAMEIAKENDVIVVAGKGHE 457

Query: 471 TVHIVTN 477
              I+ +
Sbjct: 458 DYQILKD 464


>gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 501

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 179/513 (34%), Positives = 273/513 (53%), Gaps = 42/513 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ KD P   + L+  P    + KI+ +  DSR I  G  ++A+ G + DGH FI
Sbjct: 1   MKLLTLL-KDLPS--HTLTGSP----QVKISHLECDSRRILPGSCYIALKGTRADGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+AI +GA A+V     + +   A +      + V+++R  +SL  +   G+   ++  +
Sbjct: 54  PEAIRRGACAVVAEMPCTQEAREAGVS----WVEVNDSRLAVSLMGAAWNGRPSRHMTMI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-------RLTTPSPIYLA 171
            VTGT+GK++ A     + ++S L +  IG      + A DN         TTP P+ L 
Sbjct: 110 GVTGTNGKTTTAYIAHSLLKQSWLRAGLIG------TIAYDNGEEITPSTHTTPGPLELE 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L  +   G   VS+E SSH LDQ R+ GI    G FTNL +DH+DYH T + YF AK 
Sbjct: 164 HLLKEMYENGCRGVSMEVSSHALDQERVAGINFNVGIFTNLTQDHLDYHHTMENYFQAKA 223

Query: 232 RLFEELL----PKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           +LFE++      +  P A+I  DDAY + + +         ++V   G  +       +H
Sbjct: 224 KLFEQMAQDTKSRRKPVAVINIDDAYGRRLAEMFSGR----MTVKTYGSALGADFRMLVH 279

Query: 287 NK----QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           +      +  +  +GK +    PL G+F +YN+L A    I  GI     + +L+ +  V
Sbjct: 280 HATAKGSEYELEYKGKSYLVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQV 339

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR E   T+  G +I++DYAHT ++LE + K ++ + S R+I VFGCGGDRD+GKRP+M
Sbjct: 340 PGRLELF-THPGGAQIFIDYAHTPDALENVCKTLKELCSRRLITVFGCGGDRDRGKRPLM 398

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQD 460
           G  A  L+D  IVT DNPRSE+P  I ++I  G+P   +    +R  AI TAIE     D
Sbjct: 399 GAAAARLSDACIVTSDNPRSEEPLSIISQIAAGMPEGRYAIIPDRARAIATAIEQARLGD 458

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++++AGKGHE    ++ G    S   ++ R + 
Sbjct: 459 IVLIAGKGHENYQELSTGRIDFSDAKEVRRNMF 491


>gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 465

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 171/473 (36%), Positives = 264/473 (55%), Gaps = 35/473 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR ++ G++F AI G + DGH F+ +A+ +GA A+VV      +D  A  R    +
Sbjct: 16  ITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVE-----RDVEAVQR----V 66

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT 150
           + V+NTRK L+  A   YG+  E++  V  T       +   ++ I ++SG  +   G  
Sbjct: 67  IKVENTRKTLAESAHLFYGRPSESLKVVGVTGTNGKTTTTYILESILKKSGSHA---GLM 123

Query: 151 STISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            TI     D       TTP PI   + L  +   G THV  E SSH LDQ+R+ G +  A
Sbjct: 124 GTIQYRLGDKVFGSGRTTPDPITWHRTLREMVGSGATHVVAEVSSHALDQYRVWGTEFEA 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+DYH+  + YF AK RLF +   K   A++  DD Y K +   A + G R
Sbjct: 184 VIFTNLTQDHLDYHRDMEDYFRAKARLFFDY--KYRFAVVNTDDPYGKRL---ARDLGDR 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            L+ G +G+ + ++      +  ++ +S +GK F F   L G+FQ YN   A    + +G
Sbjct: 239 ALTYGREGETLRIEDFKTGFDGSELRVSFKGKSFRFHSNLIGDFQAYNLSAALCYTLEVG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ID   + E L+ +HV PGRFE V  + RG    VDYAHT ++++ +L+ +R +T  R+I 
Sbjct: 299 IDPNAIQEALKDVHV-PGRFE-VHRSDRGFIAVVDYAHTPDAMDNVLRTMRRLTKNRVIC 356

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--- 443
           VFG GG+RD+GKRP+MGK A   +D+ I+T DNPR E+PE+I  +I+ G+    +KG   
Sbjct: 357 VFGAGGNRDRGKRPLMGKSAEKWSDVVIITSDNPRDEEPERIIEDILKGVE---DKGKVK 413

Query: 444 ---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R EAI  A+ +  + D++ + GKGHE    +  G K    D +++++ L
Sbjct: 414 VIPDRREAIAEALNIAKEGDIVAILGKGHEDYQEI-KGVKYPFSDSEVLKKFL 465


>gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 483

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 273/474 (57%), Gaps = 42/474 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  +++I ++  DSR ++ G +F+ I G   DGH +  +A   GA+ IV      L++ 
Sbjct: 15  IKEDKKEIEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEEL 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139
           S     +  I+ V ++RK L++ AS  YG   KH + I+ +TGT+GK++    ++ I ++
Sbjct: 73  S--YYKDCTIIKVPDSRKALAIMASNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +G   +++G   TI+++  + ++    TTP  + L K    +  + V +  +E SSH L 
Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLY 186

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I  DD+Y ++
Sbjct: 187 LDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306
           V+K+A   G ++ + G       ++K C +   + + +   G +FD +F          +
Sbjct: 243 VLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E L  +  VPGR E V  N + G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+EDP
Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +
Sbjct: 412 TLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465


>gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 484

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 261/465 (56%), Gaps = 30/465 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  +  D+R I+ G  FV + G K DGH FI  AI +GA+ ++V    S+Q+    
Sbjct: 19  EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  I+ V +TRK L++ +S  +G  K    I+ +TGT+GK++ A  ++ I +++G  
Sbjct: 75  ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            F  G   TI+++  + ++    TTP    L +    +   GV +  +E SSH L+  R+
Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G++   G FTNL RDH+D+H+T + Y+NAK +LFE    + + +II  DD Y   ++K 
Sbjct: 189 YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               G +      S+  +  F   + + +  N  +  +++EG + +F   +PGE+ +YN+
Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLEGIE-EFSINIPGEYNIYNS 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374
           L        + I    + E L  + V+PGR E V         I +DYAHT + LE IL 
Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIAI+T DNPRSE+P  I  +I+ 
Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +    FI + NR EAIR A+ M  + DV+V+AGKGHET  I+ +
Sbjct: 422 PLNYDNFIIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466


>gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
 gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
          Length = 484

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 261/465 (56%), Gaps = 30/465 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  +  D+R I+ G  FV + G K DGH FI  AI +GA+ ++V    S+Q+    
Sbjct: 19  EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  I+ V +TRK L++ +S  +G  K    I+ +TGT+GK++ A  ++ I +++G  
Sbjct: 75  ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            F  G   TI+++  + ++    TTP    L +    +   GV +  +E SSH L+  R+
Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI+   G FTNL RDH+D+H+T + Y+NAK +LFE    + + +II  DD Y   ++K 
Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               G +      S+  +  F   + + +  N  +  +++EG + +F   +PGE+ +YN+
Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLEGIE-EFSINIPGEYNIYNS 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374
           L        + I    + E L  + V+PGR E V         I +DYAHT + LE IL 
Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIAI+T DNPRSE+P  I  +I+ 
Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +    F+ + NR EAIR A+ M  + DV+V+AGKGHET  I+ +
Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466


>gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 486

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 174/490 (35%), Positives = 268/490 (54%), Gaps = 37/490 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DLI     E I+ L      + ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 1   MKLKDLI-----ENIDVLETNVKDF-DKDITDIAYNSKNAKEGCAFVCIKGFKADGHEYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G HP     +
Sbjct: 55  DEAIQNGACLVVVEEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFG-HPSKDFLL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S    ++ I + +      IG   + I S   + + TTP    L K    
Sbjct: 110 IGVTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQ 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF  
Sbjct: 170 MKNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-- 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQV 291
                   ++ ADD + K +++   +      SV Y        +VCA +     NK Q 
Sbjct: 228 --GMSKKRVVNADDRWGKRIIEMYPD------SVTYAKD--SDAQVCARNIKLFVNKNQF 277

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +   G+  +    +PG F +YN+L A+  CI++GI    + + LE L  VPGRFE V +
Sbjct: 278 ELWYNGEKEEITLNIPGLFSIYNSLAASACCISLGIKLDTIKKGLENLKAVPGRFEIVES 337

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N +   I +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD
Sbjct: 338 NEKF-TIVIDYAHTPDGLLNLMKTVDEVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMAD 396

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             IVT DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGK
Sbjct: 397 FVIVTSDNPRTEDPLKIIADILEGIRKTNVEYMVIPDRYEAIKYAIKNARENDFIVLAGK 456

Query: 468 GHETVHIVTN 477
           GHET  I+ +
Sbjct: 457 GHETYQILKD 466


>gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 512

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 181/501 (36%), Positives = 278/501 (55%), Gaps = 40/501 (7%)

Query: 24  QWRER------------KINEVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGA 68
           +W ER            +++ +S DSR +  G +F+     + DG L   F+ +AIA+GA
Sbjct: 14  KWMERFLPPVLEGDLPERLSGISDDSRKVSPGDLFLL----RMDGPLQEKFLDEAIAKGA 69

Query: 69  EAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
             +V S  +  S+ +         P+ VV+N ++   + AS  YG+   +  ++ VTGT+
Sbjct: 70  ALLVASRRHLPSVLERRQVSGRKVPVCVVENIQEAAGVIASAWYGEPSRSMKVVGVTGTN 129

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +  V+ +  RSGL +  IG     +     +   TTP  ++L ++     + G+ 
Sbjct: 130 GKTTSSFLVRSMLDRSGLRAGLIGTVWFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLV 189

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES- 242
            +S+E SSH L Q R+ G    A  FTNL RDH+DYH+T + YFNAK RL   + P  S 
Sbjct: 190 AMSMEVSSHALSQDRVAGTFFSAVHFTNLTRDHLDYHKTFEDYFNAKARLLHWVNPDGSL 249

Query: 243 -PAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKF-IH-LKKVCAIHNKQQVTISVEGK 298
            PA+I ADD Y + + ++ A     R+L+ G+  +  IH L+ V ++   +   +SVEG+
Sbjct: 250 PPAVINADDPYGRILAEQIARRGDRRLLTYGHSERLSIHPLESVISLDGIKGA-LSVEGR 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR- 357
                  LPG+F + N + A G  +A+GI    V   ++ L  VPGRFE       GG+ 
Sbjct: 309 RISVDSTLPGDFNLQNIMGAVGCALALGISPEAVEAGIQSLPGVPGRFERANP---GGKF 365

Query: 358 -IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++L+ IL  +R +T GR+I VFGCGGDRD+GKRP MGK+A +L+DI +VT
Sbjct: 366 AVIVDYAHTDDALKNILSALRPLTPGRVITVFGCGGDRDRGKRPRMGKVAGELSDIVVVT 425

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDPE I  EI  G+      ++ + +R  AI  A+ +    D +++AGKGHE  
Sbjct: 426 SDNPRTEDPEFIIDEIEPGLNMTGRSYLREVDRRTAIARALSLAQPGDAVLIAGKGHEPY 485

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ + +     D +  REIL
Sbjct: 486 QIIGHAKSHFD-DRETAREIL 505


>gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
 gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
          Length = 484

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 169/465 (36%), Positives = 260/465 (55%), Gaps = 30/465 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  +  D+R I+ G  FV + G K DGH FI  AI +GA+ ++V    S+Q+    
Sbjct: 19  EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  I+ V +TRK L++ +S  +G  K    I+ +TGT+GK++ A  ++ I +++G  
Sbjct: 75  ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            F  G   TI+++  + ++    TTP    L +    +   GV +  +E SSH L+  R+
Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI+   G FTNL RDH+D+H+T + Y+NAK +LFE    + + +II  DD Y   ++K 
Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               G +      S+  +  F   + + +  N  +  +++E  + DF   +PGE+ VYN+
Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLEEVE-DFSINIPGEYNVYNS 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374
           L        + I    + E L  + V+PGR E V         I +DYAHT + LE IL 
Sbjct: 303 LGCIICAYNLNIPMNKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIAI+T DNPRSE+P  I  +I+ 
Sbjct: 362 TVKAFTRNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +    F+ + NR EAIR A+ M  + DV+V+AGKGHET  I+ +
Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466


>gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus
           propionicus DSM 2032]
          Length = 1011

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 166/485 (34%), Positives = 259/485 (53%), Gaps = 44/485 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + +  ++SDSR +  G +FVA+ G K DG  +IP+AI +G  A+VV     + ++     
Sbjct: 26  QPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPEAIGKGCLAVVVDVDEGVDEW----- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144
            N P+L+VD+    L   A+   G +P +   ++A+TGT+GK++ +  ++++   SG   
Sbjct: 81  -NVPVLLVDDCPAALGELAAAWNG-YPASQMQLVAITGTNGKTTCSWLIEEMLVASGFRP 138

Query: 145 FQIGPTSTISSFA------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             IG  +     A      QD  LTTP P+ L   L  ++  GVTHV +E SSH L Q R
Sbjct: 139 GVIGTVNYRYHGADGLHIIQDAPLTTPDPVTLQGLLRTMADNGVTHVIMEVSSHALQQQR 198

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKE 255
           L   +     FTNL RDH+DYHQ+ + YF AK +LF + L ++  A++      +     
Sbjct: 199 LGSTRFDVALFTNLSRDHLDYHQSMEVYFEAKKQLFHKHLKEQGVAVVVLGPQAEGCDWG 258

Query: 256 VMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +  A     +V+  G  G   +   ++       +  + + G + +F  PL GE+ V N
Sbjct: 259 GLLTASLPAEQVIRCGLHGSCEVSAHQLTQTMEGFRCCLHLRGAEVNFASPLTGEYNVLN 318

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR----GGRIYVDYAHTSNSLE 370
            L AAG+ + +G+     LE L ++  VPGR E V         G  ++VDYAHT ++L+
Sbjct: 319 VLAAAGVGLGLGLVPDRFLEGLARVGRVPGRLERVRLPGEQIGSGPAVFVDYAHTPDALD 378

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L+N++ +T+GR++ VFGCGGDRD+GKRP+MG++A  LAD  +VT DNPR+E PE I  
Sbjct: 379 NVLRNLKKLTTGRLLCVFGCGGDRDRGKRPLMGRVAAQLADAVVVTSDNPRTEAPEAIID 438

Query: 431 EIIHGIP--------------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           EI+ G+                     G+    +R  AI  A  +    D +++AGKGHE
Sbjct: 439 EIVAGVEAGGKSRTDAWALLNAAQPVDGYTVIADRRCAITAACSLAAPGDSVLLAGKGHE 498

Query: 471 TVHIV 475
           T  I+
Sbjct: 499 TYQII 503



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  V +DSR ++ G IFVA+ G   DGH +I  A  Q A AIV       +     +R
Sbjct: 543 RVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAAEQRAGAIVA------EWMPPRMR 596

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQI 136
                + V ++ + L   A+  Y +   N    + A+TG+SGK++V   V  I
Sbjct: 597 PEVLYIEVKDSLRALGDLAA--YRRRLLNGTIKVAAITGSSGKTTVKEMVASI 647


>gi|42520747|ref|NP_966662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|42410487|gb|AAS14596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 524

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 165/416 (39%), Positives = 245/416 (58%), Gaps = 16/416 (3%)

Query: 83  SATIRSNTPILVV---DNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQ 138
           SAT  +NTP   V    N ++      SR Y  K P+ + AVTGT+GK+SV  F +QI Q
Sbjct: 112 SATCMTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ 171

Query: 139 RSGLSSFQIGPTST-ISSFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            SG ++  IG   T I++  +DN   LTTP    L   L  ++S+ V  +++EASSHG+D
Sbjct: 172 NSGYNAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSHGID 231

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R+ G++  A +FTN  +DH+DYH++   YF AK RLF E+LP+    I+ AD      
Sbjct: 232 QYRIHGLRFTAAAFTNFSQDHLDYHKSIDEYFEAKKRLFYEVLPEGETVILNADINEYHA 291

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++K A     +V++ G  G  I L +     N Q +TI +  + ++  FP+ G+FQ YN 
Sbjct: 292 LLKIAEKRSNKVITYGKTGSDITLLEQTPTPNGQYLTIKIGDEIYNMFFPVLGQFQAYNL 351

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+  + G++   +   + KL   PGR E V   +     +VDYAHT ++L+  L +
Sbjct: 352 LCAIGIVTSSGLNYREI--SIGKLVSPPGRMEKVQPFA-----FVDYAHTPSALKQALLS 404

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++   + +I++VFGCGG+RD+ KR  MGKIA   AD  I+TDDNPR EDP KIR +I+  
Sbjct: 405 LKWHFNKKIVLVFGCGGNRDRKKRSEMGKIAQMYADKVIITDDNPRDEDPAKIRHDILLY 464

Query: 436 IPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            P  +E G+R EAI   I++  N+  +L+VAGKGHE   I+ N   + S D ++I+
Sbjct: 465 CPSALEIGDRKEAIEKGIDIAYNEGMILLVAGKGHEKFQIIGNQTFEFS-DVEVIK 519


>gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 484

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 167/465 (35%), Positives = 261/465 (56%), Gaps = 30/465 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  +  D+R I+ G  FV + G K DGH FI  AI +GA+ ++V    S+Q+    
Sbjct: 19  EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  I+ V +TRK L++ +S  +G  K    I+ +TGT+GK++ A  ++ I +++G  
Sbjct: 75  ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            F  G   TI+++  + ++    TTP    L +    +   GV +  +E SSH L+  R+
Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI+   G FTNL RDH+D+H+T + Y+NAK +LFE    + + +II  DD Y   ++K 
Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               G +      S+  +  F   + + +  N  +  +++E  + +F   +PGE+ +YN+
Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374
           L        + I    + E L  + V+PGR E V    +    I +DYAHT + LE IL 
Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKKLPYSIIIDYAHTPDGLENILS 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIAI+T DNPRSE+P  I  +I+ 
Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +    F+ + NR EAIR A+ M  + DV+V+AGKGHET  I+ +
Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466


>gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 1; AltName:
           Full=Meso-A2pm-adding enzyme 1; AltName:
           Full=Meso-diaminopimelate-adding enzyme 1; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium
           acetobutylicum ATCC 824]
 gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum EA 2018]
          Length = 482

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 259/475 (54%), Gaps = 45/475 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ ++ DSR +    +F  I G   DGH FI +A+ +GA+ IV +              
Sbjct: 22  EIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFIDKAVEKGADVIVCTKV-------PKKLP 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N  ++ V++ RK +++  +  Y    H   ++ +TGT+GK++    ++ + + SG   ++
Sbjct: 75  NCTVVKVEDGRKAMAVMGANFYDNPSHKLKLIGITGTNGKTTSTYMMKSMLESSG---YK 131

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI+++  D ++    TTP  + L K  S +    + +  +E SSH L   R+ GI
Sbjct: 132 VGLIGTIANYIGDKKIESHRTTPESLELQKLFSDMVHDKIDYCVMEVSSHSLYLDRVYGI 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G FTNL +DH+D+H+T + Y+ AKM LF+        +II  DD Y + V K   +
Sbjct: 192 VFEEGIFTNLTQDHLDFHKTFENYYKAKMILFKN----SKRSIINIDDKYGERVFK---D 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVY 313
           AG   ++ G   K        A    + + ++  G +FD  +          +PG++ VY
Sbjct: 245 AGNDKITYGLTEK--------ADLKAENLKMTSRGTEFDLCYRGLREHVKINIPGKYNVY 296

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMI 372
           NAL +   C+  GI    V + L KL  VPGR E V  N+     + +DYAHT + LE +
Sbjct: 297 NALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDFDVVLDYAHTPDGLEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK  R  T GR+I VFGCGGDRD+ KRPIMG+I   L+DIA++T DNPRSE+PE+I  +I
Sbjct: 357 LKASREFTKGRLISVFGCGGDRDKTKRPIMGEIGSKLSDIAVITSDNPRSENPEEIIKDI 416

Query: 433 IHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           + GI    ++   NR EAI+ A+ M  K DV+V+AGKGHE   I+  G+K +  D
Sbjct: 417 VQGIKTDNYVIVENRKEAIKKAMLMAKKDDVIVLAGKGHENYQIL--GDKTIHFD 469


>gi|117924068|ref|YP_864685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
 gi|117607824|gb|ABK43279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
          Length = 495

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 175/488 (35%), Positives = 267/488 (54%), Gaps = 25/488 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I+QL++  +   E  I ++ +DSR  + G +F A+ G++ DG  +IPQA+   A AI   
Sbjct: 12  IDQLTV--LGDGETVITQLCNDSRLCEPGSLFAALPGSRVDGRDYIPQALELEAAAI--- 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
               L D S ++  NTP L+  + R+ L+  A+  YG+  + +  + +TGT+GKS+VAS 
Sbjct: 67  ----LHDGSLSLDPNTPQLIHPDPRRALAHVAAAFYGQPQKKLKSIVITGTNGKSTVASM 122

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVE 188
              I + SG    ++G  ST+    +  +L    TTP  I L   L+ +       + +E
Sbjct: 123 CATILRHSGQ---RVGLISTVGIDIEGQKLATSHTTPDAITLYGLLADMVQANCRWLVME 179

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSH LDQHRL GI+     FTNL RDH+DYH    AYF AK +LF E  PK   A++ +
Sbjct: 180 ASSHALDQHRLVGIQPDVALFTNLSRDHLDYHGDMGAYFQAKAKLFREYHPKL--ALLPS 237

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DA+++ +       G  V + G   +  ++ K++ A  +  +  +  + +        P
Sbjct: 238 SDAHAQALNSICREQGVAVQTYGRVARQGVYAKQISAAIDCTRFVLQQKNQSAPVTLMAP 297

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + NAL AA  C+ + +D   V E L +   V GR + +    +   + VD+AHT +
Sbjct: 298 GRFNLDNALAAASACLGMDLDLETVAEGLNRFQSVAGRVQAI-HEGQNFAVLVDFAHTPD 356

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L+ +L ++R +T G++ VVFGCGGD+D GKRP MG+ A  LA   I+TDDNPRSEDP  
Sbjct: 357 ALDRLLSSLRPLTPGKLWVVFGCGGDKDSGKRPHMGECAGRLAHFPIITDDNPRSEDPAA 416

Query: 428 IRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           IRA+I+ G       E  +R +AI  A+      D +V+AGKGHE   I  +G    S D
Sbjct: 417 IRAQIMRGCRNRNAQEMDDREDAITYALVNAQPGDTVVIAGKGHEQSQIGAHGATPFS-D 475

Query: 486 CDIIREIL 493
            ++ R+ L
Sbjct: 476 AEVARQAL 483


>gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
 gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
          Length = 484

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 167/465 (35%), Positives = 260/465 (55%), Gaps = 30/465 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  +  D+R I+ G  FV + G K DGH FI  AI +GA+ ++V    S+Q+    
Sbjct: 19  EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  I+ V +TRK L++ +S  +G  K    I+ +TGT+GK++ A  ++ I +++G  
Sbjct: 75  ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            F  G   TI+++  + ++    TTP    L +    +   GV +  +E SSH L+  R+
Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI+   G FTNL RDH+D+H+T + Y+NAK +LFE    + + +II  DD Y   ++K 
Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               G +      S+  +  F   + + +  N  +  +++E  + +F   +PGE+ +YN+
Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374
           L        + I    + E L  + V+PGR E V         I +DYAHT + LE IL 
Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIAI+T DNPRSE+P  I  +I+ 
Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +    F+ + NR EAIR A+ M  + DV+V+AGKGHET  I+ +
Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466


>gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
          Length = 484

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 167/465 (35%), Positives = 260/465 (55%), Gaps = 30/465 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  +  D+R I+ G  FV + G K DGH FI  AI +GA+ ++V    S+Q+    
Sbjct: 19  EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  I+ V +TRK L++ +S  +G  K    I+ +TGT+GK++ A  ++ I +++G  
Sbjct: 75  ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            F  G   TI+++  + ++    TTP    L +    +   GV +  +E SSH L+  R+
Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI+   G FTNL RDH+D+H+T + Y+NAK +LFE    + + +II  DD Y   ++K 
Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               G +      S+  +  F   + + +  N  +  +++E  + +F   +PGE+ +YN+
Sbjct: 245 IEERGLKTKVSAFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374
           L        + I    + E L  + V+PGR E V         I +DYAHT + LE IL 
Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIAI+T DNPRSE+P  I  +I+ 
Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +    F+ + NR EAIR A+ M  + DV+V+AGKGHET  I+ +
Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466


>gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
 gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
          Length = 482

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 170/471 (36%), Positives = 263/471 (55%), Gaps = 46/471 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  I  +  +S+ I+ G IFVAI G   DGH FIP+A+ +GA  ++   A  L     
Sbjct: 19  YTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFIPEALERGAGVVIGEKALDL----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
                   + V ++RK L+L ++  YG +P +   ++ VTGTSGK++V   + ++ +  G
Sbjct: 74  ---GGKLYIRVKDSRKALALSSAWFYG-YPADKLKLIGVTGTSGKTTVTYLISEMLKDIG 129

Query: 142 LSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + +  IG   TI +   + +L    TTP  + L +  S +  + + ++++E SSH L   
Sbjct: 130 ICTGIIG---TIGNVLNNRKLPTSHTTPESLELNQLFSKMVEENIEYLAMEVSSHSLKLQ 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R++GIK   G FTNL +DH+D+H+T + YFN+K +LF +       A+I  DD       
Sbjct: 187 RVEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFSQ----SKQAVINIDD------- 235

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-----PL----PG 308
                +G R+LS+    ++ +     A    + + ++  G  +D +F     P+    PG
Sbjct: 236 ----ESGKRLLSIINIPRYTYGLDKKADLRAENIRMTANGVSYDLVFRNKIYPVFYSTPG 291

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F VYN+L A    +A+G     ++  L+K   VPGRFE V  N++G  + VDYAH  + 
Sbjct: 292 LFSVYNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELV-ENNQGIIVIVDYAHKPDG 350

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L+ +L  IR   +G+II VFGCGGDRD+GKRPIMGKI+ +L+D  I+T DNPRSE PE I
Sbjct: 351 LKNVLLTIREFCTGKIITVFGCGGDRDKGKRPIMGKISSELSDYTIITSDNPRSEKPEAI 410

Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             +I  GI G  + +   R EAI+ AI +  K D +++AGKGHET  I  +
Sbjct: 411 IEQIESGIIGDNYEKITERAEAIKKAISIAKKGDAVLIAGKGHETYQIFND 461


>gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 537

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 170/486 (34%), Positives = 270/486 (55%), Gaps = 55/486 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  I  V   S+ ++   IFVA+ G++ DGH F+  AI +GA AIVV           
Sbjct: 48  YLDPDIASVHYKSQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVVQKK-------- 99

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
           T++ ++ I+ V+NTRK L   A+  YG   E   I+ +TGT+GK++ A  ++ I Q +G 
Sbjct: 100 TVK-DSIIIEVENTRKALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAYLIESILQTAGF 158

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  IG  +   S     + +TTP  + L K LS +   GVTHV +E SSH +D  R++G
Sbjct: 159 KTGVIGTINCRYSGKTFPSPVTTPESLDLQKILSEMVIDGVTHVVMEVSSHAIDLFRIEG 218

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPA--IIYADDAYSK-- 254
               +  FTNL +DH+DYH+  ++Y+  K +LF E L   PK+  A  +I  DD   K  
Sbjct: 219 CFFDSAVFTNLTQDHLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTVINCDDERGKAL 278

Query: 255 ------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                 + +K   ++ C + +   +   + +K   A+ +  + T S+E +       L G
Sbjct: 279 SGILSTKCIKTGSDSECDIYASNSRIDTLGIK---ALISTPESTFSIESE-------LVG 328

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N + AAG+   +GI S ++ + ++ L V+PGR E +  N  G  +YVDYAHT ++
Sbjct: 329 KHNIENIMSAAGVASGLGISSEIIKKGIKSLSVIPGRLEKI-NNEAGISVYVDYAHTPDA 387

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L+ +L ++R I  GR+I VFGCGGDRD+ KRP+MG++A DL+D A++T DNPR+EDP +I
Sbjct: 388 LKNVLLSLRPIVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAVITSDNPRTEDPTEI 447

Query: 429 RAEIIHGI-------------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             +II GI                    G++ + +R +AI   I +    DV+++AGKGH
Sbjct: 448 INQIITGIKRNKIDRYEPTAPSLFSDKKGYVVEPDRKKAIHLGINIAKAGDVVLIAGKGH 507

Query: 470 ETVHIV 475
           ET  ++
Sbjct: 508 ETYQLI 513


>gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 484

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 260/465 (55%), Gaps = 30/465 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  +  D+R I+ G  FV + G K DGH FI  AI +GA+ ++V    S+Q+    
Sbjct: 19  EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  I+ V +TRK L++ +S  +G  K    I+ +TGT+GK++ A  ++ I +++G  
Sbjct: 75  ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            F  G   TI+++  + ++    TTP    L +    +   GV +  +E SSH L+  R+
Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G++   G FTNL RDH+D+H+T + Y+NAK +LFE    + + +II  DD Y   ++K 
Sbjct: 189 YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               G +      S+  +  F   + + +  N  +  +++E  + +F   +PGE+ +YN+
Sbjct: 245 IEERGLKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374
           L        + I    + E L  + V+PGR E V         I +DYAHT + LE IL 
Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIAI+T DNPRSE+P  I  +I+ 
Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +    F+ + NR EAIR A+ M  + DV+V+AGKGHET  I+ +
Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466


>gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
 gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
          Length = 485

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 171/479 (35%), Positives = 270/479 (56%), Gaps = 29/479 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  +  DSR+I+   IF AI G   DGH FI  AI +GA+ IV    +  ++    I
Sbjct: 20  EIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFIESAIEKGAKVIVFDKGFENENMYKDI 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V N+RK L++ AS  YG  K    ++ VTGT+GK++    ++ I + +G   
Sbjct: 80  ----TFIKVKNSRKALAVAASNYYGNPKDKLKLIGVTGTNGKTTSTFMIKSILEEAG--- 132

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           F++G   TI ++  D ++    TTP  + + K    +   GV +  +E SSH L   R+ 
Sbjct: 133 FKVGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDMVDSGVDYCVMEVSSHSLYLDRVY 192

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI+   G FTNL +DH+D+H+T + Y+N+K+ LF+  +     ++I  DD Y + ++K  
Sbjct: 193 GIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNSIN----SVINIDDNYGERILKEI 248

Query: 261 HNAGCRVLSVGYQGKFIHLK-KVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                +  +   + K+  LK +   +H++  + T+  +G        +PGE+ V NAL +
Sbjct: 249 EE---KTFTYSIK-KYSDLKAESVRLHSRGGEFTVDFKGNKEKINIHIPGEYNVSNALGS 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIR 377
              C+  GI   ++   LEKL  VPGR E V    + G  + VDYAHT + L+ +L+  R
Sbjct: 305 ILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGYDVIVDYAHTPDGLDNVLRTAR 364

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             T G++I V+GCGGDRD+ KRPIMG+I  +L+D+AI+T DNPR+E+P  I  +I+ G+ 
Sbjct: 365 DFTKGKLISVYGCGGDRDRAKRPIMGRIGTELSDLAILTSDNPRTEEPFSIIDDIVKGVT 424

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
              +I   +R EAI+ A+ +  K DV+VVAGKGHE   I+   +K +  D  ++I+EI+
Sbjct: 425 KDNYIIVQSRREAIKKAMTIAKKDDVIVVAGKGHEDYQILK--DKTIHFDEREVIKEII 481


>gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 484

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 260/465 (55%), Gaps = 30/465 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  +  D+R I+ G  FV + G K DGH FI  AI +GA+ ++V    S+Q+    
Sbjct: 19  EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  I+ V +TRK L++ +S  +G  K    I+ +TGT+GK++ A  ++ I +++G  
Sbjct: 75  ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            F  G   TI+++  + ++    TTP    L +    +   GV +  +E SSH L+  R+
Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G++   G FTNL RDH+D+H+T + Y+NAK +LFE    + + +II  DD Y   ++K 
Sbjct: 189 YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               G +      S+  +  F   + + +  N  +  +++E  + +F   +PGE+ +YN+
Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374
           L        + I    + E L  + V+PGR E V         I +DYAHT + LE IL 
Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIAI+T DNPRSE+P  I  +I+ 
Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +    F+ + NR EAIR A+ M  + DV+V+AGKGHET  I+ +
Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466


>gi|225630606|ref|YP_002727397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
 gi|225592587|gb|ACN95606.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
          Length = 475

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 174/470 (37%), Positives = 268/470 (57%), Gaps = 26/470 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-- 86
           +I  V+ + + I+ G++FV +    E   ++I Q ++ GA+AI+ S   + +  S  I  
Sbjct: 18  EIKGVTCNPKKIKEGYLFVCV---SERDRIYIDQILSCGAKAIIASDCIT-EALSLGIIP 73

Query: 87  -RSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            R     +   N ++  S   SR Y  K P+ + AVTGT+GK+SV  F +QI Q SG ++
Sbjct: 74  TRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQNSGYNA 133

Query: 145 FQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             IG   T  +  +    N LTTP    L   L  +S   V H+ +E+SSHG+DQ+R+ G
Sbjct: 134 ASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGIS---VEHLVLESSSHGIDQYRIHG 190

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +KL A +FTN  +DH+DYH++   Y   K RLF E+LP+   AI+ AD      ++K A 
Sbjct: 191 LKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGALLKIAE 250

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               +V++ G +G  I L +  +  N Q +T+ ++ + ++  FP+ G+FQ YN L A G+
Sbjct: 251 KRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGI 310

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G++   +   +EKL   PGR E V   +     +VDYAHT ++L+  L +++   +
Sbjct: 311 S---GLNYREIC--VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHIN 360

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            +II+VFGCGG+RDQ KR  MGKIA   AD  I+TDDN R EDP KIR +I+   P  +E
Sbjct: 361 KKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALE 420

Query: 442 KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G R EAI   +++  N+  +L+VAGKG+E   I+ N   + S D ++I+
Sbjct: 421 IGGRREAIEKGVDIAYNEGMILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 469


>gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
          Length = 474

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 255/471 (54%), Gaps = 31/471 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  +  +S++S+ I+A   F AI    ++G+ FI  A+ +GA  ++     +      
Sbjct: 9   FEKHNVKGLSNNSKTIKANDAFFAI----KNGNDFIADALEKGAALVITDDKKN------ 58

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   ++ V++ ++ L       Y K P+ ++AVTGT+GKSSV S++ QI    G  +
Sbjct: 59  ---TTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115

Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             IG T  +  F  DN       LTT   +   K    L+  G+ +++ EASSHGLDQ R
Sbjct: 116 ASIG-TIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQR 174

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L  +K+    FT+  +DH+DYH T++ Y  AK++LF + L K+  AI+ +D    K +  
Sbjct: 175 LGDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKD 234

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                  + L VG  G    + K  +    Q +    + K++DF  P+ G FQ  N L+A
Sbjct: 235 YLDKHKIKYLCVGANGN-CKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIA 293

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                    D + V+  L K+  V GR E V   +    I++DYAHT ++LE  L  ++ 
Sbjct: 294 GLSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKN 349

Query: 379 ITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I +  G++ V+FGCGG+RD  KR +MGKIA  +AD  IVTDDNPR EDP+ IR EII GI
Sbjct: 350 IKAKGGKLSVIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGI 409

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               +IE  +R EAI+  I  L K D+L++AGKGHE   I+  G++K+  D
Sbjct: 410 VTTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQII--GDEKIRFD 458


>gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
 gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
          Length = 474

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 166/471 (35%), Positives = 255/471 (54%), Gaps = 31/471 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  +  +S++S+ I+A   F AI    ++G+ FI  A+ +GA  ++     +      
Sbjct: 9   FEKHNVKGLSNNSKTIKANDAFFAI----KNGNDFIADALEKGAALVITDDKKN------ 58

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   ++ V++ ++ L       Y K P+ ++AVTGT+GKSSV S++ QI    G  +
Sbjct: 59  ---TTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115

Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             IG T  +  F  DN       LTT   +   K    L+  G+ +++ EASSHGLDQ R
Sbjct: 116 ASIG-TIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQR 174

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L  +K+    FT+  +DH+DYH T++ Y  AK++LF + L K+  AI+ +D    K +  
Sbjct: 175 LGDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKD 234

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                  + L VG  G    + K  +    Q +    + K++DF  P+ G FQ  N L+A
Sbjct: 235 YLDKHKIKYLCVGANGN-CKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIA 293

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                    D + V+  L K+  V GR E V   +    I++DYAHT ++LE  L  ++ 
Sbjct: 294 GPSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKN 349

Query: 379 ITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I +  G++ ++FGCGG+RD  KR +MGKIA  +AD  IVTDDNPR EDP+ IR EII GI
Sbjct: 350 IKAKGGKLSIIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGI 409

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               +IE  +R EAI+  I  L K D+L++AGKGHE   I+  G++K+  D
Sbjct: 410 VTTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQII--GDEKIRFD 458


>gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
 gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
          Length = 495

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 248/457 (54%), Gaps = 16/457 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +  DSRHIQAG  FVAI+G+  DG  FI +AI QGA  ++  +       S   R  
Sbjct: 27  VTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAITQGANLVLAQACPQHPHGSVEERHA 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ ++   K LS  A RLYG H  +++AVTGT+GK++++  + Q     G  +  +G 
Sbjct: 87  VPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNGKTTISQLIAQWIDLLGHRAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     S  Q    TT + + +   L  L+ QG  + ++E SSHGL Q R+  +   AG 
Sbjct: 147 TGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEYTAMEVSSHGLVQGRVKCVPFDAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           F+NL RDH+DYH T  AY +AK+ LF E   ++  AII  DD    EV  R        +
Sbjct: 207 FSNLSRDHLDYHGTMDAYADAKLSLFTEHETRQ--AIINVDD----EVGARWAQQLQHAV 260

Query: 269 SVGYQGKFIHLKKVCAI---HNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
            V    K    + + A+   + +  +TI V+G         PL GEF   N ++A    +
Sbjct: 261 GVSLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLRAPLIGEFNASNLMLALATLL 320

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G +   +L    +L  V GR E      +  ++ VDYAHT ++LE  L+ +R    G+
Sbjct: 321 SLGFELDALLAAAPQLQPVLGRMELFQAPGKA-KVVVDYAHTPDALEKALRALRVHCQGQ 379

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441
           +  +FGCGGDRD GKRP+M  IA   AD  I+TDDNPRSEDP+ I  +++ G+  P    
Sbjct: 380 LWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRSEDPQAIVNDMLAGLKTPQHAS 439

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            + NR +A+RTA+    +QD++++AGKGHE   ++ +
Sbjct: 440 VEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAH 476


>gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii NCTC 11218]
          Length = 495

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 164/457 (35%), Positives = 246/457 (53%), Gaps = 16/457 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +  DSRHIQAG  FVAI+G+  DG  FI +AI QGA  ++  +       S   R  
Sbjct: 27  VTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAITQGANLVLAQACPQHPHGSVEERHA 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ ++   K LS  A RLYG H  +++AVTGT+GK++++  + Q     G  +  +G 
Sbjct: 87  VPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNGKTTISQLIAQWIDLLGHRAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     S  Q    TT + + +   L  L+ QG  + ++E SSHGL Q R+  +   AG 
Sbjct: 147 TGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEYTAMEVSSHGLVQGRVKCVPFDAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           F+NL RDH+DYH T  AY +AK+ LF E   ++  AII  DD    EV  R        +
Sbjct: 207 FSNLSRDHLDYHGTMDAYADAKLSLFTEHETRQ--AIINVDD----EVGARWAQQLQHAV 260

Query: 269 SVGYQGKFIHLKKVCAI---HNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
            V    K    + + A+   + +  +TI V+G         PL GEF   N ++A    +
Sbjct: 261 GVSLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLRAPLIGEFNASNLMLALATLL 320

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G +   +L    +L  V GR E      +  ++ VDYAHT ++LE  L+ +R    G+
Sbjct: 321 SLGFELDALLAAAPQLQPVLGRMELFQAPGKA-KVVVDYAHTPDALEKALRALRVHCQGQ 379

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  +FGCGGDRD GKRP+M  IA   AD  I+TDDNPRSEDP+ I  +++ G+       
Sbjct: 380 LWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRSEDPQAIVNDMLAGLKAPQHAN 439

Query: 444 ---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
              NR +A+RTA+    +QD++++AGKGHE   ++ +
Sbjct: 440 VEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAH 476


>gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
          Length = 512

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 169/469 (36%), Positives = 253/469 (53%), Gaps = 29/469 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSA 84
           R+  I  +  DSR +Q G +FV I G   DGH FIPQA+A GA AIV +     + +  A
Sbjct: 33  RDTVITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAAGASAIVTTREDVEVPEGIA 92

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +R       +D    +   + +R        ++ +TGT+GK++ +   + I +++G   
Sbjct: 93  VLRVKELQPALDTIVPYFHDYPARKM-----RVVGITGTNGKTTTSYITRAILRKAG--- 144

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +++G   TI    +D  L    TTP  + L   L+ +  +G+ +V +E SSH LDQ+R+ 
Sbjct: 145 YKVGLIGTIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDYVVMEVSSHALDQNRVA 204

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEV 256
           GI+     FTNL +DH+DYH+T + Y  AK +LF+ +      +   A++  DDA    +
Sbjct: 205 GIEFDTAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQGKTAVVNIDDAVGATM 264

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEG-KDFDFLFPLPGEFQVYN 314
           +  AH A C+ L+   + +         +H N  +  +  E   +      + G F VYN
Sbjct: 265 L--AH-AKCKHLTYAIEKEADLRATDILVHANGAEFVLHHESFGEMPLKLHITGIFNVYN 321

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            + A G  +A  ID+A++ E LE    VPGRFE V    +   I VDYAHT + +E +LK
Sbjct: 322 VMSAVGAALAEHIDAAVIKETLEAFTAVPGRFELVKA-GQDFSIIVDYAHTPDGVENVLK 380

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R I   RII VFGCGGDRD+ KRPIMG++A +LAD+ I T DNPR+EDPE I +++  
Sbjct: 381 TARKIAKKRIIAVFGCGGDRDRTKRPIMGRLAAELADVVIATSDNPRTEDPEFILSQVEE 440

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+   I         +R  AI  AIEM  K D++V+ GKGHE   I+ +
Sbjct: 441 GVDEAIGTKHHELIVDRRHAIYRAIEMAEKDDIVVILGKGHENYQILKD 489


>gi|58584749|ref|YP_198322.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419065|gb|AAW71080.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 496

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 168/468 (35%), Positives = 264/468 (56%), Gaps = 27/468 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ + + ++  ++FV +    E+G   +       A AI+ S       FSA    
Sbjct: 44  EIKGVTCNPKKVKEDYLFVCV---SEEGERCVG---GIKASAIIAS-------FSAIPAQ 90

Query: 89  NTPILVV-DNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I +   N R+      SR Y  K  + + AVTGT+GK+SV  F +QI Q +G ++  
Sbjct: 91  GAEIYIFYPNPREIYGKIVSRFYQFKQLKCVAAVTGTNGKTSVVEFCRQIWQNAGCNAAS 150

Query: 147 IGPTST-ISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +G   T +++  +DN   LTTP    L   L  ++S+ + H+++EASSHG+DQ+R+ G++
Sbjct: 151 VGTLGTCVNNERKDNNSNLTTPDADDLYFTLRDVNSKNIEHLALEASSHGIDQYRIHGLE 210

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L A +FTN  +DH+DYH+    YF AK RLF E+LP+    ++ +D      ++K A   
Sbjct: 211 LNAAAFTNFSQDHLDYHKDVNEYFEAKKRLFYEVLPEGKTVVLNSDIDEYYALLKIAEKR 270

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V++ G  G  I L +     + Q +TI +  + +   +P+ G+FQ YN L A G+ I
Sbjct: 271 SNKVITYGKTGSDITLLRQIPTPDGQHLTIKIGDEVYGMFYPVLGQFQAYNLLCAIGIVI 330

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A  +D   +   ++K   +PGR E V   +     +VDYAHT ++L+  L +++   S +
Sbjct: 331 ASKLDYQRIC--IDKFVSLPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHFSKK 383

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +++VFGCGG+RDQ KR  MGK+A   AD  IVTDDNPR EDP KIR +I+   P  +E G
Sbjct: 384 VVLVFGCGGNRDQAKRAKMGKMAKMYADKVIVTDDNPRDEDPAKIRYDILLCCPNALEVG 443

Query: 444 NRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +R EAI+  I +   ++ VL+VAGKGHE   I+ N   + S D ++I+
Sbjct: 444 DRREAIKKGINIAYDENMVLLVAGKGHEKFQIIGNKTFEFS-DVEVIK 490


>gi|144897243|emb|CAM74107.1| UDP-N-acetylmuramyl-tripeptide synthetase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 343

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 152/314 (48%), Positives = 193/314 (61%), Gaps = 3/314 (0%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTP P  L +AL+ L+   +TH ++EASSHGLDQ RLDG+KL A  FTNL RDH+DYH 
Sbjct: 12  LTTPDPADLHEALAELAENSITHAAMEASSHGLDQFRLDGVKLQAAGFTNLTRDHLDYHG 71

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             QAY  AK+RLF +LLP++  A+I AD                RVL  G  G  + LK 
Sbjct: 72  DMQAYLAAKLRLFTDLLPEDGVAVINAD--CPVAAQVAQAAGSRRVLRFGRAGAELALKD 129

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +    + Q + + V G       PL G FQ  NAL A GL I  G ++   +  LE L  
Sbjct: 130 IRPDSHGQVLDLDVLGHSATIRLPLAGTFQAANALAALGLVIGCGGNALAAINALESLTE 189

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR + V  +     I+VDYAHT ++LE +L  +    +GR++VVFGCGGDRD GKRP 
Sbjct: 190 IPGRLQKV-ADKDSAPIFVDYAHTPDALETVLTALLPHATGRLLVVFGCGGDRDPGKRPQ 248

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           MG+IA  LADI +VTDDNPRSEDP  IRA I+    G +E  +R  AIR A+ +L + DV
Sbjct: 249 MGEIAARLADIVLVTDDNPRSEDPALIRAAIMTAAKGAMEIADRRTAIRHAVSLLRQGDV 308

Query: 462 LVVAGKGHETVHIV 475
           LVVAGKGHE+  IV
Sbjct: 309 LVVAGKGHESGQIV 322


>gi|332704506|ref|ZP_08424594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 485

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 171/492 (34%), Positives = 267/492 (54%), Gaps = 32/492 (6%)

Query: 23  MQWRE-----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + W+E     R    V + S  + AG +FVA+ G + DG  FIP A+A+GA  IV +   
Sbjct: 6   VSWKELLAAVRAGRPVRAHSGKVGAGDVFVAVPGPQADGAGFIPDALARGAAWIVAAPGV 65

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQ 135
            L +  AT R    ++  D+ R+ L   A   +G   H   ++ VTGT+GK++++  ++Q
Sbjct: 66  RLPE-GATAR----LVTHDDPRQALGDLAQAAFGTAGHGYKLVGVTGTNGKTTISYILEQ 120

Query: 136 ICQRSGLSSFQIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +    G S  ++G   T+S     F+ D  LTTP  + L + L+ +   GV    +E SS
Sbjct: 121 LF---GGSGRKVGVLGTVSYRWPGFSMDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-IIYADD 250
           H LDQ R+ G+   A   TNL +DH+DYH+  + YF AK RLF EL PKE  A ++  +D
Sbjct: 178 HALDQQRVAGLAYDAAVLTNLTQDHLDYHKDMETYFQAKARLFREL-PKEGKAWVVNYED 236

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFP 305
            Y   +++   +AG  VL  G +   + +  + A          ++ +  EG+ F+ + P
Sbjct: 237 PYGLRLLREGLSAGRSVLGYGLETPPVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSP 296

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     N L A G+   +G+  +  ++ L     V GR E V TN  G  ++VDYAHT
Sbjct: 297 LVGRHNAMNLLTAMGVGFKLGLRES-DMQALAGFTGVSGRLERV-TNPHGLNVFVDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L  ++ +   R++ VFGCGG+RD+ KRP+MG+     AD+A++T DNPR EDP
Sbjct: 355 PDALVNVLSAVKALGVRRLVCVFGCGGNRDRAKRPLMGQAVCRHADVAVLTSDNPRHEDP 414

Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             I  ++  G+ G    + + +R +AI  A+E L  +D LVVAGKGHE    + + +   
Sbjct: 415 LAIIEDVKPGLSGCARVVIEPDRRKAIALALEGLTAEDALVVAGKGHEPYQQIGDVKHPF 474

Query: 483 SVDCDIIREILG 494
           S D  ++RE+LG
Sbjct: 475 S-DQQVVRELLG 485


>gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
          Length = 493

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 259/478 (54%), Gaps = 19/478 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA++G+  DG  FI  AI QGA A++  +       +  I  +
Sbjct: 25  VSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIEQGANAVLAQACEVKAHGTVEIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   + LS  A +LY     +++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 85  VPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 144

Query: 150 TST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    + +  Q    TT + + + K LS L++Q  T+ ++E SSHGL Q R+  +   AG
Sbjct: 145 TGNGFLDNLQQAAN-TTGNAVEIQKTLSSLANQHATYTALEVSSHGLTQGRVKALSFAAG 203

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T + Y NAK+ LF +   +   AII  DD        +  NA    
Sbjct: 204 VFTNLSRDHLDYHGTMEEYANAKLELFTQ--HQCERAIINVDDEVGHAWATQLSNA---- 257

Query: 268 LSVGYQGKFIHLKKVCAI---HNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLC 322
           ++V  +        + A    + +  +TI  +GK        PL GEF   N ++A    
Sbjct: 258 IAVSLKPNTEFESAIWATDVRYAESGITIQFDGKFGSGQLHAPLIGEFNATNLMLAFATL 317

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +++G D   +LE   +L  V GR E   T  R  ++ VDYAHT ++LE  L+ +R    G
Sbjct: 318 LSLGKDKQALLETAGQLQPVLGRMELFQTEDRA-KVVVDYAHTPDALEKALQALRVHCEG 376

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE- 441
           ++  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP +I  +++ G+    E 
Sbjct: 377 QLWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDMLSGLSKPAEA 436

Query: 442 --KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
             + +R +A+  A+E  + +D++++AGKGHE   I  NGE     D +   ++LGL L
Sbjct: 437 IVQHDRFKALSYAVENASPKDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGLSL 493


>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
          Length = 968

 Score =  266 bits (680), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 170/465 (36%), Positives = 250/465 (53%), Gaps = 28/465 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI ++  DSR +  G +FVAI G   DGH FI QA+ +GA AI+      + + +A +  
Sbjct: 25  KIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEKGACAILTEREIEIPEGAAAV-- 82

Query: 89  NTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               L V N    L +       Y      I+ +TGT+GK++ +   + I + +G   ++
Sbjct: 83  ----LRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGKTTTSYMTRAILREAG---YK 135

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI    +D  L    TTP  + L + L+Y++ +G+  V +E SSH LDQ+R+ GI
Sbjct: 136 VGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFVVMEVSSHALDQNRVAGI 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKR 259
           +     FTNL +DH+DYH+T + Y  AK RLF+ +     KE    +  DD  + E M  
Sbjct: 196 EFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKEGKTAVVNDDDAAGETM-L 254

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           AH A C  L+   + +     +   +H +  ++T++      D    + G F VYN + A
Sbjct: 255 AH-AKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAFGRMDLSLGVTGIFNVYNVMSA 313

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G  +A  I    +   LE    VPGRFE V    +   I VDYAHT + LE IL   R 
Sbjct: 314 VGAALAERIAPEAIKRALEAFKSVPGRFELVDAG-QAFSIIVDYAHTPDGLENILNTARE 372

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           I +GRI+ VFGCGGDRD+ KRPIMG+IA  L+D+ +VT DNPR+EDP +I  E+  G+  
Sbjct: 373 IAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNPRTEDPARILDEVEVGVLE 432

Query: 439 FI-----EK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I     EK  +R  AI  A+ +  K D++++AGKGHE   I+ +
Sbjct: 433 KIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHENYQILKD 477



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 151/373 (40%), Gaps = 42/373 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +++ +D+R I AG +FVA+ G + DG  F  QA+ +GA  ++V    ++    A +    
Sbjct: 526 SDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEAKLPKTG 581

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +L   +T       A+    K    ++A+TG++GK++             L++  +G  
Sbjct: 582 VVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD----------LTAAVLGAC 631

Query: 151 STISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ--HRLDGIKLI 205
             +   A   +N +  P        L+ L  +     + VE    GL Q           
Sbjct: 632 LLVQKTAANYNNEIGLP--------LTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPT 683

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  H++   + +    AK  L E + P     I+ ADDA     M+    AG 
Sbjct: 684 VAIVTNVGEVHMELLGSIENIARAKAELVEAVEPG-GTVILNADDARVL-AMREKAKAGV 741

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLFPLPGEFQVYNALVA 318
           RV++ G   +   ++ V     +  +   +E K+        +   P+PG   V NAL A
Sbjct: 742 RVVTFGLS-RDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 800

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
                 +G+  A V   L    V P +         G   +V+ A+ ++  S    LK +
Sbjct: 801 IAAARVLGLSLADVRRGLA---VPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTL 857

Query: 377 RTITSGRIIVVFG 389
             + +GR I V G
Sbjct: 858 AEMFAGRKIAVLG 870


>gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
 gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
          Length = 493

 Score =  266 bits (680), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 259/475 (54%), Gaps = 17/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA++G+  DG  FI  AI QGA A +  +       +  I  +
Sbjct: 25  VSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   + LS  A +LY     +++ VTGT+GK+++   + Q  +     +  +G 
Sbjct: 85  VPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDDKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  Q    TT + + + K LS L++Q  T+ ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF +   K   AII  DD    +   +  NA    +
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLGLFTQHQCKR--AIINVDDEVGHQWASQLSNA--IAI 260

Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
           S+    +F   I   +V   + +  +TI  +GK    +   PL GEF   N ++A    +
Sbjct: 261 SLKPNTEFESAIWATEVS--YAESGITIKFDGKFGSGELHAPLIGEFNATNLMLAFATLL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++GI+   +LE   +L  V GR E   T  R  ++ VDYAHT ++LE  L+ +R    G+
Sbjct: 319 SLGIEKQALLETAGQLQPVLGRMELFQTEDRA-KVVVDYAHTPDALEKALQALRVHCEGQ 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP +I  +++ G+    E  
Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDMLAGLSKPAEAI 437

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            + +R +A+  AIE  +  D++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 438 VQHDRFKALSYAIENASPNDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
 gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
          Length = 487

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 164/476 (34%), Positives = 253/476 (53%), Gaps = 28/476 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+  S  + +G +FVA  G  EDG  FIP A+A+GA  IV     +L +      +   +
Sbjct: 24  VAGHSAKVVSGGVFVAASGTAEDGARFIPDALARGATVIVAGPGIALPE-----GAKAAL 78

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + VD  RK L L A+   G  +    ++ VTGT+GK++V+  ++++   +G    ++G  
Sbjct: 79  VTVDEPRKALGLLAAARCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGK---KVGVL 135

Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T++       +D  LTTP  + + ++L+ +++ G     +EASSH LDQ RL G+   A
Sbjct: 136 GTVAYRWPGVTRDASLTTPDCLTIHESLAAMAAAGCDLAVMEASSHALDQDRLAGLSFAA 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL +DH+DYH+  + YF AK +LF E LP  + A++  DD +   ++K    A   
Sbjct: 196 GVFTNLTQDHLDYHKDMETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAAVGY 255

Query: 267 VLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            L+    G    L      H++  Q +      + F+   P+PG     N L A G  + 
Sbjct: 256 GLTKAPAGFARLLVGGIRSHDRDGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALT 315

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+      + L   H  PGR E +  N+ G  ++VDYAHT ++LE +L   R  T+GR+
Sbjct: 316 LGLPYE-TFDALADCHGAPGRLERI-PNASGLTVFVDYAHTPDALENVLGAAREFTAGRL 373

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----- 439
             VFGCGGDRD+ KRP M +    LAD+A++T DNPR E P  I   I    PG      
Sbjct: 374 FAVFGCGGDRDRTKRPRMAEAVSRLADVAVLTSDNPRHEAPLAI---IEDAKPGLAKARK 430

Query: 440 -IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            I + +R  AI  A++ +  +DVLV+AGKGHE+   + + +   S D  ++RE+ G
Sbjct: 431 VIIEPDRRRAIALALDAMRPEDVLVIAGKGHESYQQIGDVKHPFS-DAAVVRELTG 485


>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
          Length = 966

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 170/465 (36%), Positives = 250/465 (53%), Gaps = 28/465 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI ++  DSR +  G +FVAI G   DGH FI QA+ +GA AI+      + + +A +  
Sbjct: 23  KIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEKGACAILTEREIEIPEGAAAV-- 80

Query: 89  NTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               L V N    L +       Y      I+ +TGT+GK++ +   + I + +G   ++
Sbjct: 81  ----LRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGKTTTSYMTRAILREAG---YK 133

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI    +D  L    TTP  + L + L+Y++ +G+  V +E SSH LDQ+R+ GI
Sbjct: 134 VGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFVVMEVSSHALDQNRVAGI 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKR 259
           +     FTNL +DH+DYH+T + Y  AK RLF+ +     KE    +  DD  + E M  
Sbjct: 194 EFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKEGKTAVVNDDDAAGETM-L 252

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           AH A C  L+   + +     +   +H +  ++T++      D    + G F VYN + A
Sbjct: 253 AH-AKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAFGRMDLSLGVTGIFNVYNVMSA 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G  +A  I    +   LE    VPGRFE V    +   I VDYAHT + LE IL   R 
Sbjct: 312 VGAALAERIAPEAIKRALEAFKSVPGRFELVDAG-QAFSIIVDYAHTPDGLENILNTARE 370

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           I +GRI+ VFGCGGDRD+ KRPIMG+IA  L+D+ +VT DNPR+EDP +I  E+  G+  
Sbjct: 371 IAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNPRTEDPARILDEVEVGVLE 430

Query: 439 FI-----EK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I     EK  +R  AI  A+ +  K D++++AGKGHE   I+ +
Sbjct: 431 KIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHENYQILKD 475



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 151/373 (40%), Gaps = 42/373 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +++ +D+R I AG +FVA+ G + DG  F  QA+ +GA  ++V    ++    A +    
Sbjct: 524 SDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEAKLPKTG 579

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +L   +T       A+    K    ++A+TG++GK++             L++  +G  
Sbjct: 580 VVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD----------LTAAVLGAC 629

Query: 151 STISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ--HRLDGIKLI 205
             +   A   +N +  P        L+ L  +     + VE    GL Q           
Sbjct: 630 LLVQKTAANYNNEIGLP--------LTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPT 681

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  H++   + +    AK  L E + P     I+ ADDA     M+    AG 
Sbjct: 682 VAIVTNVGEVHMELLGSIENIARAKAELVEAVEPG-GTVILNADDARVL-AMREKAKAGV 739

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLFPLPGEFQVYNALVA 318
           RV++ G   +   ++ V     +  +   +E K+        +   P+PG   V NAL A
Sbjct: 740 RVVTFGLS-RDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 798

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
                 +G+  A V   L    V P +         G   +V+ A+ ++  S    LK +
Sbjct: 799 IAAARVLGLSLADVRRGLA---VPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTL 855

Query: 377 RTITSGRIIVVFG 389
             + +GR I V G
Sbjct: 856 AEMFAGRKIAVLG 868


>gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
 gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
          Length = 490

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 268/487 (55%), Gaps = 29/487 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           + +E KI  +  DSR I+  ++F A+ G+  DGH FI +AI  GA+ I+V     +  + 
Sbjct: 15  KGKEFKIEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMIIVEENIEVSKYD 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRS 140
                +   + V++ RK L + AS  YG +P++   I+ +TGT+GK++ +  ++ I +++
Sbjct: 75  KY--EDISFVFVEDVRKHLGIIASNYYG-YPQDKIKIIGITGTNGKTTSSYILENILEKT 131

Query: 141 GLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                +IG T        F   N  TTP  + L K ++    +GV +  +E SSH L+  
Sbjct: 132 A----RIGTTGNRILDEEFETVN--TTPESLELVKLINESVKRGVEYFIMEVSSHALEIG 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R++ +K  +  FTNL +DH+D+H+T + YFNAK ++F  +L       +  DD Y K ++
Sbjct: 186 RVNMLKFDSAIFTNLTQDHLDFHKTMENYFNAKRKIFS-MLRNSGTGTVNIDDGYGKRII 244

Query: 258 ---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              K A N   + +S+  +   ++ +     ++  ++ I    K++     L GE+ +YN
Sbjct: 245 EEKKDAENVCYKTVSIKDKNADLYGEIAEYTNDGMKIKIVHNDKEYFANINLVGEYNLYN 304

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L  A   +A+GI+   ++E L+K+  VPGRFE V  N++  RI VDYAHT + L  I K
Sbjct: 305 VLGCAASALALGIEIEKIIEKLQKMPSVPGRFETV-KNNKNARIVVDYAHTDDGLTNIGK 363

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R IT  R+I VFG GGDRD  KRP M K A + +D  I+T DNPR+E+P  I  E+  
Sbjct: 364 TLRKITDNRVITVFGAGGDRDNKKRPKMAKAAAEFSDFIILTSDNPRTENPANILKEVEA 423

Query: 435 GI-------PGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           G+         +    +R +AI+ A+ EM  + D L++AGKGHET  I+   EK+   D 
Sbjct: 424 GLIEINFPKDKYTVIEDREQAIKYAVQEMTGEGDSLLIAGKGHETYQIIGK-EKRHFDDR 482

Query: 487 DIIREIL 493
           +I ++ L
Sbjct: 483 EIAKKYL 489


>gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia montanensis]
          Length = 479

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 169/486 (34%), Positives = 260/486 (53%), Gaps = 43/486 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76
           +++ K+  +S +S+ ++   +F AI G   DG+ FI  A+++GA        + IV+   
Sbjct: 9   FQQHKVKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVLVITDNKKNIVIDKV 68

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++D  A +     I                 Y K P+N++AVTGT+GKSSV S++ Q 
Sbjct: 69  IYVKDVQAALHEAIEIF----------------YPKKPKNLIAVTGTNGKSSVVSYIAQT 112

Query: 137 CQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
               G  +  IG T  +  F  DN       LTT   +   K    L+  G+ ++  EAS
Sbjct: 113 HSLLGKKAASIG-TIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEAS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D 
Sbjct: 172 SHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDI 231

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + V    HN   + ++VG +G     +  C++   Q +  +   ++++F  P+ G F
Sbjct: 232 EEIEFVKDYLHNHNIKFITVGKKGDLEITRINCSLKG-QNINFTFNNREYNFNTPIIGSF 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q  N L+A       G     V++ L ++  V GR E +   +    I+VDYAHT ++LE
Sbjct: 291 QASNLLIAVLSMHYTGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALE 346

Query: 371 MILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             L  ++ I     ++ VVFGCGG+RD+ KR +MG++A   AD  I+TDDNPR+EDP+ I
Sbjct: 347 KALTELKNIKLHDSKLSVVFGCGGNRDKAKRSLMGQMAAKRADTIIITDDNPRNEDPKLI 406

Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485
           RAEII GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+  G+KK+   D
Sbjct: 407 RAEIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDD 464

Query: 486 CDIIRE 491
            +++R+
Sbjct: 465 AEVVRK 470


>gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
 gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
          Length = 483

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 159/465 (34%), Positives = 256/465 (55%), Gaps = 33/465 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+++N +  DSR +  G +FV + G + DGH +  +AI  GA+ ++      ++    T+
Sbjct: 20  EKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYANKAIEAGAKVVLCEKKIDIKSEGVTV 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
                 L+V+  RK L+  ++  YG HP     ++ VTGT+GK++    ++ + +++G  
Sbjct: 80  ------LLVNEGRKALATMSANYYG-HPTKSLKLIGVTGTNGKTTTVYLLKSMLEKAGK- 131

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             ++G   TI+++  +N+L    TTP  + L K    +      +  +E SSH L   R+
Sbjct: 132 --KVGLVGTIANYIGENKLKSERTTPESLELQKLFKDMVDANCEYCVMEVSSHSLQLDRV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK- 258
            G +   G FTNL RDH+D+H++   Y+NAK +LFE    +   ++I  DD Y   V+K 
Sbjct: 190 YGCEFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLFE----RSKASVINVDDDYGYRVLKD 245

Query: 259 --RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             +  N   +  S+     F   K    +  +  +   + G++F+ +  LPGE+ VYNAL
Sbjct: 246 VEKLENKEIKTYSINNNSDF---KASDLMLKEGDIHFKINGEEFNSV--LPGEYNVYNAL 300

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILKN 375
            A G    +GI +  + + L  + VVPGR E +G        I +D+AHT + L+ IL+ 
Sbjct: 301 GAVGAMSILGISNESIRKGLLDV-VVPGRCERIGYKYDIPYDIIIDFAHTPDGLKNILET 359

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++  T  R+I V+GCGGDRD+ KR  +G+I  +LAD+AI+T DNPR EDP  I  EI+ G
Sbjct: 360 LKGFTKNRLIAVYGCGGDRDKVKRAELGRIGTELADLAIITSDNPREEDPMAIIKEIVAG 419

Query: 436 I--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           I    ++   NR+EAI+ A+ M  + DV+V+AGKGHE   I   G
Sbjct: 420 ITKSNYLAIENRVEAIKLALGMAEEGDVVVLAGKGHENYQITNEG 464


>gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 487

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 180/510 (35%), Positives = 266/510 (52%), Gaps = 52/510 (10%)

Query: 10  DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   L+N L+I    + E K I  V  DSR ++ G +FVAI G + +GH +I QA   GA
Sbjct: 3   NLTSLLNNLTIKASLYVEDKPITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRSGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            AIV      L      +  +   +VV N+   L+L A+  YG   E   ++ VTGT+GK
Sbjct: 63  TAIVCEQLPQL------LFPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           +++A+ + Q+ +++G  +   G  ST++ +  D R     TTP P+ L   L  +  QGV
Sbjct: 117 TTIATLLYQLFRKAGQKA---GLLSTVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGV 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSHG+DQHR +G+    G FTNL RDH+DYH+T  AY + K R F+  LP  +
Sbjct: 174 KYCFMEVSSHGIDQHRTEGLHFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPSTA 232

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD           N    + +   Q K   LK     H   +  I +E + FD 
Sbjct: 233 FALVNIDDK----------NGAFMLQNTKAQKKTYALK----THADYKAHI-IESR-FDG 276

Query: 303 LF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           L            L GEF  YN L   G    +G+D    L  +  +  V GRF++   +
Sbjct: 277 LLLRINQHEVWTKLIGEFNAYNLLAVFGAATLLGVDELEALTLISAIEPVAGRFQY-AVS 335

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLA 410
           + G    VDYAHT ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+
Sbjct: 336 ATGVITIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLS 395

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEK----GNRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T DNPR+E+PE I +E+  G+      K     +R +AI++  +   K D++++A
Sbjct: 396 DNVILTSDNPRNEEPEAILSEMEQGVQAQHFHKVQTITDRRQAIQSVCKNAQKGDIVLIA 455

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           GKGHET   +  G +    D +I+RE L L
Sbjct: 456 GKGHETYQEI-KGVRHHFDDFEIVREYLEL 484


>gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 947

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 178/462 (38%), Positives = 259/462 (56%), Gaps = 28/462 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-SSAYSLQDFSATIRSNTP 91
           +S D+++I+   IF AI GNK DG+ FIP AI +G++ IV      S+Q+    I +N  
Sbjct: 22  ISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAINKGSKIIVTEKKVKSVQNGILYIHTN-- 79

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                N RK L+  A ++Y K P+N++AVTGT+GKSS+A+F  QI +   L++ ++    
Sbjct: 80  -----NVRKLLAETAFKIYNKKPKNLIAVTGTNGKSSIANFYFQILK---LNNKKVASIG 131

Query: 152 TISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T+   +++  L    TT  PI LAK LS L S  + +V +EASSHGL Q+RLDG+K  +G
Sbjct: 132 TLGVKSKNINLNLSNTTIDPIKLAKILSKLKSHKIENVIMEASSHGLKQNRLDGLKFNSG 191

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL +DH+DYH+  + Y NAK+ LFE L+ K+   I   D    +    +      R+
Sbjct: 192 IFTNLSQDHLDYHKNLKNYLNAKLYLFENLIKKKGNLI--TDQLIPEFKKIKKITINKRL 249

Query: 268 LSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AGLCI 323
                  K  +L+ +        Q   I +     +    L G+ Q+ N L+A  A    
Sbjct: 250 KLYALNDKKNNLQVISHSFKGEAQSFKIKLNNSIQNINLNLIGKIQLKNVLMAIIAAKNS 309

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSG 382
            IG++   +L  + KL  V GRFE +G      ++ +DYAHT ++L+  L N+R    + 
Sbjct: 310 NIGLNK--ILNKIYKLKPVEGRFEKIGKIKNHSKVILDYAHTPDALKTCLLNLREQFPAK 367

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFI 440
           +IIV+FGCGG+RDQ KR  MGKIA   +D  I+T+DNPR E+P+KIR +          I
Sbjct: 368 KIIVLFGCGGNRDQNKRSKMGKIASYFSDKIILTNDNPRLENPQKIRRDIKKGIKKKKII 427

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E  +R  AI  AI  LN  D+L+VAGKGHE    +  G KK+
Sbjct: 428 EISDRAMAITRAIHDLNSGDILLVAGKGHEKTQDI--GSKKI 467



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 45/296 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +S+ +    IF AI G K DG+ F+ Q+  + A   VV+   +  + S  I+       V
Sbjct: 516 NSQEVTKNDIFFAIKGKKNDGNKFVAQSFKRKASLAVVNKIQNKLNHSRQIK-------V 568

Query: 96  DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            NT KFL+   S+++ K  + NI+A+TG+ GK+++   +     +  +S   I P S   
Sbjct: 569 KNTLKFLT-NVSKIFRKSIDTNIIAITGSCGKTTLKELLGNTLNK--ISKVSISPKS--- 622

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLI----AGSF 209
               +N+   P  ++    ++     G+  V       G+D+   +D +  I     G  
Sbjct: 623 ---YNNKFGVPLSLF---NINQKDEFGILEV-------GMDKKGEIDYLSKIIEPDVGVI 669

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   H    +  +    AK  + + +       ++ ADD++ K     A     +V+S
Sbjct: 670 TNINYAHAKNFKNIKQIALAKSEIIDNIRL-YGFIVLNADDSFFKLHYNIAKKKNIKVIS 728

Query: 270 VGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ--VYNALVA 318
            G +      K I++K       K ++ IS+  K   FL  L  +FQ  +YN L A
Sbjct: 729 FGIKNHKADIKLINIK---PFRKKFRINISLNNKRKYFL--LSNDFQNNIYNILSA 779


>gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
 gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
          Length = 493

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/475 (35%), Positives = 254/475 (53%), Gaps = 17/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q+G  FVAI+G+  DG  FIP AI QGA A++  +       +  I  +
Sbjct: 25  VSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQQGANAVIAQACEQKAHGTIEIVDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A  LY     +++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  VPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        Q+   TT + + + K LS L+ Q   + ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF E   +   A+I  DD       K+ +NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTE--HQCGHAVINVDDVVGAAWAKQLNNA----L 258

Query: 269 SVGYQGKFIHLKKVCAIH---NKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
           +V  +      + V A H    +  +TI  +GK  +     PL GEF   N ++A    +
Sbjct: 259 AVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTLL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G     +L    +L  V GR E    +    ++ VDYAHT ++LE  L+ +R    G 
Sbjct: 319 SLGFSKQDLLATAGQLQPVLGRMELFQADDNA-KVVVDYAHTPDALEKALQALRVHCQGE 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I  +++ G+    E  
Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKDMLVGLTKPAEAI 437

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            + +R +A+  A+E  + QD++++AGKGHE   I+ +G    S D +    +LGL
Sbjct: 438 VQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTIHYS-DRESAMTLLGL 491


>gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
 gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
          Length = 489

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 178/475 (37%), Positives = 259/475 (54%), Gaps = 30/475 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +++DSR+++ G++FV +    E    F+  A+  GA  IV  SA +L         
Sbjct: 26  QVSGITADSRNVKPGFVFVCL---SEVAKKFVSDAVKAGARFIVAGSAEALPRVD----- 77

Query: 89  NTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           N  I++      F    AS  Y G+ PE + AVTGT+GK+SVA F +QI   +G +   I
Sbjct: 78  NAQIIIFPKQHDFYYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASI 137

Query: 148 GPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T    I +      LTTP  + L K LS L +  V ++ +EASSHG+ Q RL G+K
Sbjct: 138 GTLGTAVGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLCIEASSHGMAQKRLYGVK 197

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261
           +   +FTNL RDH DYH   + Y+ AK +LF E+L  E  A++ AD     E+ +   + 
Sbjct: 198 VSVAAFTNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSGRYAELRRLVGSR 257

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320
           N     ++VG   +   LK     HN   V + + GK  +D  FP+ G+FQ+ N L A  
Sbjct: 258 NTITYGINVG-DVRLTRLKSSTLGHN---VAVEICGKVVYDGAFPVLGKFQIPNLLCALA 313

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +  A G   + +   ++KL    GR E +     GGR+ VDYAHT  +LE  L +++   
Sbjct: 314 IVTASGARCSDI--PIDKLVSPRGRMELI-----GGRVIVDYAHTPAALEHALTSLKWHG 366

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              +I++VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPR+E+PE IR EI+      
Sbjct: 367 FPQKIVLVFGCGGDRDREKRGAMGMVAGKYADVIIVTDDNPRNENPEAIRKEILSHCERA 426

Query: 440 IEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           IE  NR +AI  A+    + D +L++AGKGHET   +  GE     D D++R  L
Sbjct: 427 IEIPNRSDAIHYAVNFAVRNDHMLLIAGKGHETTQQIA-GESIEFNDGDVVRSCL 480


>gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 497

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 167/489 (34%), Positives = 258/489 (52%), Gaps = 36/489 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E  I  ++++S+ ++  + F AI G   DGH FI +AI  GA  I +     ++     
Sbjct: 18  QETVIEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKNGASVIFIEDEKYVESLKG- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
              N  +++ DN RK L+L ++R Y    E   ++A+TGT+GK++ ++ + Q  + +G  
Sbjct: 77  --KNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKTTTSNLLAQYYEMAG-- 132

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            +++G   TI+    D  L    TTP P+   K L  +  +G   V  E SSH  DQ+R+
Sbjct: 133 -YKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVSSHAADQYRV 191

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVM 257
              K   G FTNL +DH+DYHQT + YF AK R+FE++    KE+   I  DD Y + ++
Sbjct: 192 YSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQIDEFNKEAIYSINVDDEYGRRIL 251

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPG 308
               N     L V    K I   K           +S+   +F + +          L G
Sbjct: 252 DYLKNH----LKVN-DDKIITYGKTSEDFKILDYRLSLFETEFSYKYKDTLSKIKTKLRG 306

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F +YN   A    I  G D   + E    L  + GRFE +    +G  + +DYAHT ++
Sbjct: 307 VFNIYNLSAAVSFLIKDGFDLKFLEEKALHLKPIKGRFEVI--EGQGFIVVIDYAHTPDA 364

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE ILK++  I   RII VFG GG+RD+ KRP+MG+ A  L+DI I+T DNPR+EDP  I
Sbjct: 365 LENILKSLNEIKENRIIAVFGAGGNRDKTKRPLMGETAEKLSDIVILTSDNPRNEDPLSI 424

Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV- 484
             +I+ GI      I   +R +AI  AI +  ++D++++AGKGHE   I+  G+K +   
Sbjct: 425 IEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKGHENYQII--GDKILHFD 482

Query: 485 DCDIIREIL 493
           D ++++EI+
Sbjct: 483 DAEVVKEII 491


>gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
 gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
          Length = 486

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 178/495 (35%), Positives = 260/495 (52%), Gaps = 55/495 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFS 83
            ++ I  V  DSR ++ G +FVAI G + +GH +I QAI  GA AIV        L D S
Sbjct: 19  EDKDITSVCFDSRKVEKGSMFVAITGTQSNGHEYIDQAIRSGANAIVCEQLPQQPLPDVS 78

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
                    +VV N+   L+L A+  YG   E   ++ VTGT+GK+++A+ + Q+ +++G
Sbjct: 79  --------YIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIATLLYQLFRKAG 130

Query: 142 LSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +   G  ST++ +  D R     TTP P+ L   L  +  QGV +  +E SSHG+DQH
Sbjct: 131 QKA---GLLSTVAVYVDDQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQH 187

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R +G++   G FTNL RDH+DYH+T  AY + K R F+  LP  + A++  DD       
Sbjct: 188 RTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPATAFALVNNDDK------ 240

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLP 307
               N    + +   Q K   LK     H   +  I +E + FD L            L 
Sbjct: 241 ----NGAFMLQNTKAQKKTYALK----THADYKAYI-IESR-FDGLLLRINQHEVWTKLI 290

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF  YN L        +GID    L  +  +  V GRF++   ++ G    VDYAHT +
Sbjct: 291 GEFNAYNLLAVYATATLLGIDELETLTLISAIEPVAGRFQY-AVSATGVITIVDYAHTPD 349

Query: 368 SLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D  I+T DNPR+E+P
Sbjct: 350 ALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVILTSDNPRNEEP 409

Query: 426 EKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           E I +E+  G+ P    K     +R +AI++  +   K D++++AGKGHET   +  G +
Sbjct: 410 ETILSEMEQGVQPQHFYKVQNITDRRQAIQSVCKNAQKGDIILIAGKGHETYQEI-KGVR 468

Query: 481 KMSVDCDIIREILGL 495
               D +I+RE L L
Sbjct: 469 HHFDDFEIVREYLEL 483


>gi|225677128|ref|ZP_03788128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225590832|gb|EEH12059.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 514

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 164/416 (39%), Positives = 244/416 (58%), Gaps = 22/416 (5%)

Query: 83  SATIRSNTP---ILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQ 138
           SAT  +NTP   +L   N ++  S   SR Y  K P+ + AVTGT+GK+SV  F +QI Q
Sbjct: 108 SATCMTNTPGFAVLEHLNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ 167

Query: 139 RSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            SG ++  IG   T  +  +    N LTTP    L   L  +S   V H+ +E+SSHG+D
Sbjct: 168 NSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGIS---VEHLVLESSSHGID 224

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF E+LP+   AI+ AD      
Sbjct: 225 QYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGA 284

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++K A     +V++ G +G  I L +  + HN Q +T+ ++ + ++  FP+ G+FQ YN 
Sbjct: 285 LLKIAEKRSNKVVTYGKKGSDITLLEQTSTHNGQHLTVKIDNQIYNTFFPVLGKFQAYNL 344

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+    G++   +   +EKL   PGR E V   +     +VDYAHT ++L+  L +
Sbjct: 345 LCAIGIS---GLNYREIC--VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLS 394

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++   + +II+VFGCGG+RDQ KR  MGKIA   AD  I+TDDN R EDP KIR +I+  
Sbjct: 395 LKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLH 454

Query: 436 IPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            P  +E G R +AI   +++  N+  +L+VAGKG+E   I+ N   + S D ++I+
Sbjct: 455 CPDALEIGGRRKAIEKGVDIAYNEGMILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 509


>gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 486

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 260/474 (54%), Gaps = 25/474 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+N + I   +  + +I  ++ DSR +  G +F AI G   DG+ FIP+AI +GA A++
Sbjct: 5   KLLNHIGI-SYEGIDLEILSITDDSREVIPGSLFFAITGFSTDGNKFIPEAIKKGAVAVI 63

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
             +A  ++ +S   +   P + V + R+  +L  S+ +G+  +   ++ VTGT+GK++ +
Sbjct: 64  SDNAEVVKLYSK--KYKVPFIYVKDIREKEALIVSKFFGEPSKKLKVIGVTGTNGKTTTS 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             +  +  + G  +  IG     + + +     TTPS +   K L     Q +  V  E 
Sbjct: 122 YIIYNVLNKLGHKTAIIGTVEYGTPYKRKAASRTTPSSLEYNKLLREFLDQKIEFVVSEV 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL+ HR+ GIK     FTNL +DH+D+H+    YF +K +LF   L K S ++I  D
Sbjct: 182 SSHGLELHRVTGIKFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLF--FLTK-SISVINID 238

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPL 306
           D + K +        C +++ G  GK     K+  + NK+   ++T+ +E K +     L
Sbjct: 239 DPFGKVLSGLRAIFPCELITYGKNGKV----KIENVENKKFGSEITLRLENKRYVIKTNL 294

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE+  YN   A  L +++G  +  + +  E + V PGR E V  N     +++DYAHT 
Sbjct: 295 KGEYNAYNVAAAFSLLVSLGFKAEEIKDLFESIKV-PGRLEEVVEN-----VFIDYAHTP 348

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE +L  +  I  G++I VFGCGGDRD+ KRP MGK+A   +D  I+T+DNPRSE+P 
Sbjct: 349 DALEKVLTVLSQIKKGKLITVFGCGGDRDREKRPFMGKVAEKFSDRVIITNDNPRSEEPS 408

Query: 427 KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           KI  +I+ GI      I   NR EAI  A+E     D++++AGKGHE   I+ N
Sbjct: 409 KIIEDILSGIENREKVIVIPNRKEAIFKALEEKRGNDIVLIAGKGHENYQIIGN 462


>gi|239907968|ref|YP_002954709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797834|dbj|BAH76823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
          Length = 488

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 164/476 (34%), Positives = 261/476 (54%), Gaps = 26/476 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR   +G +FVA+ G+++DG  ++  A+ +G   +V +  + L     T R    
Sbjct: 24  DVAADSRRATSGGVFVAMAGSRDDGARYVADALEKGVAFVVAAPGHDLP-AGTTAR---- 78

Query: 92  ILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++ VD+ +  L   A+  +G       ++AVTGT+GK++V+  ++++ Q +G +   +G 
Sbjct: 79  LVAVDDPQAALGALAAARFGTETMAMPVVAVTGTNGKTTVSYLIERLAQAAGHTVGVLGT 138

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +        D  LTTP  + + + L+ ++  G T   +EASSH LDQ RL G+   A +
Sbjct: 139 VAYRWPGVVHDATLTTPDCLAIHENLAAMARSGCTLAVMEASSHALDQDRLAGLSFAAAA 198

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GC 265
           FTNL +DH+DYH+    YF AK +LF   L +   A+   DDA+  +++     A   G 
Sbjct: 199 FTNLTQDHLDYHKDMAVYFEAKAKLFRRYLARAETAVFNFDDAWGLKLLHEFPQAIGYGL 258

Query: 266 RVLSVGYQGKFI--HLKKVCAIHNKQ-QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGL 321
            V   G+ G+ +  H++     H ++ Q  ++  G D +    PLPG     N L A G+
Sbjct: 259 TVPPTGF-GRLLSGHVQH----HGREGQDILAAYGDDSYAVATPLPGRHNAQNVLAACGV 313

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A+G   A     L   H  PGR E +  N  G  ++VDYAHT ++LE +L   R  T+
Sbjct: 314 ALALGW-PAETFAALADCHGAPGRLERI-PNPSGRAVFVDYAHTPDALENVLSAAREFTA 371

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           GR+ VVFGCGG+RD+ KRP+MG     LAD+A++T DNPR EDP  I  ++  G+     
Sbjct: 372 GRLFVVFGCGGNRDRAKRPLMGAAVARLADVAVLTSDNPRHEDPLAIIEDVKPGLKKARR 431

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            I + +R  AI  A+  +  +DVLV+AGKGHET   + + +   S D  ++RE+ G
Sbjct: 432 AILEPDRRRAIELALSEMRPEDVLVIAGKGHETYQQIGDVKYPFS-DAVVVRELTG 486


>gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii str. Madrid E]
 gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii]
 gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE
           (murE) [Rickettsia prowazekii]
 gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii Rp22]
          Length = 480

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 179/504 (35%), Positives = 272/504 (53%), Gaps = 61/504 (12%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +NQL      ++  +I  +S++S+ ++   +F AI G   DG+ FI  A+  GA  ++  
Sbjct: 5   LNQL------FKNHRIKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITE 58

Query: 75  SAYSLQDFSATIRSNTPI---LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +           ++NT I   + V++  K L       Y K P+N+++VTGT+GKSSV S
Sbjct: 59  N-----------KNNTAIDKVIYVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVS 107

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ Q        +  IG T  +  F  +N       LTT   +   K    L+   + ++
Sbjct: 108 YIAQAYSLLKKKAAFIG-TIGLEIFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYL 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + EASSHGL+Q RL   K+   SFT+  +DH+DYH T++ Y  AK++LF + L     AI
Sbjct: 167 AFEASSHGLEQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAI 226

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + +D    + V    HN   + ++VG +G     K  C          S+ G++ DF+F 
Sbjct: 227 LNSDIEEIEFVKDYLHNNNVKFITVGKKGDLQITKITC----------SLTGQNIDFIFN 276

Query: 306 ---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRG 355
                    + G FQ  N L+AA      G     ++E L K+  + GR E + GTN   
Sbjct: 277 NIIYNLHTLIIGSFQASNLLIAALTLYYTGFKFDEIIEALAKVKPIKGRMERIDGTN--- 333

Query: 356 GRIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             I+VDY+HT +SLE   + LKNI+ +   ++ V+FGCGGDRD+ KR +MG+IA  LAD 
Sbjct: 334 --IFVDYSHTPDSLEKALIELKNIK-LHGSKLSVIFGCGGDRDKTKRALMGQIAAKLADN 390

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I+TDDNPR EDP+ IRAEII GI    + E  +R EAI+  I  L + D+L++AGKGHE
Sbjct: 391 VIITDDNPRFEDPKLIRAEIIRGIGTATYTEIASRAEAIKYGINNLKQDDILLIAGKGHE 450

Query: 471 TVHIVTNGEKKMSV-DCDIIREIL 493
           T  I+  G+KK+   D +++R+ L
Sbjct: 451 TYQII--GDKKLPFDDSEVVRKYL 472


>gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 488

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 260/477 (54%), Gaps = 55/477 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I +V+  S++++ G+ F+ I G K DGH +I +AI +GA+ I+V   Y     ++ +
Sbjct: 21  DEDIKDVAYSSKNVEDGFAFICIKGFKTDGHEYIDEAIERGAKLIIVDEFYD----TSKL 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
           +     +   NTRK LS+ ++  + +HP     ++ VTGT+GK+S    ++ I ++SG  
Sbjct: 77  KDKVLFIKTSNTRKALSVISANFF-EHPSKNFLLIGVTGTNGKTSTTFMIKSILEQSGHK 135

Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG   + I     + + TTP    L K    +  + V  V +E SSH L+ HR+D  
Sbjct: 136 VGLIGTVKNMIGQKEIEAKHTTPESYDLQKLFFEMKKENVDSVVMEVSSHSLELHRVDCC 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G FTNL +DH+D+H T + YF AK++LFE         ++  DD + +++++   +
Sbjct: 196 DFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFE----MSKKRVVNVDDEWGRKIIRIYPD 251

Query: 263 AGCRVLSVGYQGKFIHLKKVCAI------------------HNKQQVTISVEGKDFDFLF 304
           +    ++ G   K      VCA+                   NK+QVT+++         
Sbjct: 252 S----VTYGINSK----ADVCAMSVKLYVNKNQFELRQLDNDNKEQVTLNI--------- 294

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG F VYNAL AA    A+GID   +   LE +  +PGRFE V +N +   I +DYAH
Sbjct: 295 --PGIFSVYNALAAASCAYALGIDLKTIKAGLESVKAIPGRFEIVESNDKF-TIVIDYAH 351

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT DNPR+ED
Sbjct: 352 TPDGLLNLMKTVDEVAKGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTSDNPRTED 411

Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           P KI  +I+ G+      ++   +R EAI+ AI+   + D +V+AGKGHET  I+ +
Sbjct: 412 PIKIIEDILVGLQKTNAEYVVIPDRFEAIKYAIKNAKENDFIVLAGKGHETYQILKD 468


>gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
 gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
          Length = 493

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 254/475 (53%), Gaps = 17/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q+G  FVAI+G+  DG  FIP AI QGA A++  +       +  I  +
Sbjct: 25  VSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEIVDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A  LY     +++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  VPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        Q+   TT + + + K LS L+ Q   + ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF E   +   A+I  DD       K+ +NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTE--HQCGHAVINVDDVVGAAWAKQLNNA----L 258

Query: 269 SVGYQGKFIHLKKVCAIH---NKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
           +V  +      + V A H    +  +TI  +GK  +     PL GEF   N ++A    +
Sbjct: 259 AVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTLL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G     +L    +L  V GR E    +    ++ VDYAHT ++LE  L+ +R    G 
Sbjct: 319 SLGFSKQDLLATAGQLQPVLGRMELFQADDNA-KVVVDYAHTPDALEKALQALRVHCHGE 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE+P  I  +++ G+    E  
Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEEPALIMKDMLAGLTKPAEAI 437

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            + +R +A+  A+E  + QD++++AGKGHE   I+ +G    S D +    +LGL
Sbjct: 438 VQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTIHYS-DRESAMTLLGL 491


>gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
 gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium cellulovorans 743B]
 gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
          Length = 481

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 171/478 (35%), Positives = 257/478 (53%), Gaps = 52/478 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +  DSR + +  +FV I G   DGH F  +A+  GA  I+       +D +A    +
Sbjct: 23  INGIQYDSRKVNSSDVFVCIPGFTVDGHNFAEKAVNSGANVIICE-----KDITA--YKD 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             I+ V NTRK L+   S +Y  +PE    I+ VTGT+GK++    ++ I +++G   F+
Sbjct: 76  VTIIKVKNTRKALAK-VSAVYYNNPERRLKIIGVTGTNGKTTSVFMLKAILEKAG---FK 131

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI+++  D +L    TTP  + L K  + ++  GV +  +E SSH LD  R+ GI
Sbjct: 132 VGLIGTIANYIGDKKLKAERTTPESLELFKLFNDMTEAGVDYCVMEVSSHSLDLDRVYGI 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  +G FTNL +DH+DYH+T + YFN+K +LF         +II  DD Y   +  +   
Sbjct: 192 EFNSGIFTNLTQDHLDYHKTLENYFNSKAKLF----TVSKSSIINLDDDYGVALADKT-- 245

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQVY 313
                     Q K  +     A    + + ++  G  F+         F   +PG++ + 
Sbjct: 246 ----------QEKLTYAIDKNADLKAENINLTSRGSTFELEYNGEKEIFNINIPGKYNIQ 295

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--GGRIYVDYAHTSNSLEM 371
           NAL   G  +  G+   ++ E L+ L  VPGR E V T  R  G  I VDYAHT +SL  
Sbjct: 296 NALGCIGSILKEGVHLKVIKEGLDSLKAVPGRCEIV-TQGRNLGFEIIVDYAHTPDSLLK 354

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           ILK  R  T GR+I VFGCGGDRD  KR IMG I  + +DIAI+T DNPRSE+P +I  +
Sbjct: 355 ILKTAREFTDGRLISVFGCGGDRDNSKRHIMGGIGSENSDIAIITSDNPRSEEPSEIIKQ 414

Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           ++ GI    ++ + +R +AI+ A++     D++VVAGKGHE   ++    K  ++D D
Sbjct: 415 VVSGIKKDNYLVEEDRRKAIKLAMKTAKNGDIIVVAGKGHEDYQVL----KDKTIDFD 468


>gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi ATCC BAA-1116]
 gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116]
          Length = 493

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 167/475 (35%), Positives = 252/475 (53%), Gaps = 17/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q+G  FVAI+G+  DG  FIP AI QGA A++  +       +  I  +
Sbjct: 25  VSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEIVDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A  LY     +++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  VPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        Q+   TT + + + K LS L+ Q   + ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF E   +   A+I  DD       K+ +NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTE--HQCGHAVINVDDVVGAAWAKQLNNA----L 258

Query: 269 SVGYQGKFIHLKKVCAIH---NKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
           +V  +      + V A H    +  +TI  +GK  +     PL GEF   N ++A    +
Sbjct: 259 AVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTLL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G     +L    +L  V GR E    N    ++ VDYAHT ++LE  L+ +R    G 
Sbjct: 319 SLGFSKQDLLATAGQLQPVLGRMELFQANDNA-KVVVDYAHTPDALEKALQALRVHCHGE 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  + GCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I   ++ G+    E  
Sbjct: 378 LWAILGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKGMLAGLTKPAEAI 437

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            + +R +A+  A+E  + QD++++AGKGHE   I+ +G    S D +    +LGL
Sbjct: 438 VQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTIHYS-DRESAMTLLGL 491


>gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
 gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
          Length = 491

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 169/505 (33%), Positives = 265/505 (52%), Gaps = 40/505 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + ++F +L++++         R+  E+ SDSR +  G IFVA+ G   DG  FIP A+  
Sbjct: 8   VNREFEQLLDKV--------RREGGEIRSDSREVGKGDIFVAVPGVNADGARFIPPAVEA 59

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTS 124
           GA  IV     +  + +        ++  D+ R+ L   A   +  G  P  +L VTGT+
Sbjct: 60  GASTIVCLPGGAEAEAARAAGCT--VVHHDDPREALWRLAEARWHTGSLPLRVLGVTGTN 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++ A  ++ +   +G    ++G   T+S       +   LTTP P+ +   L+ ++  
Sbjct: 118 GKTTSAYLLEHLFTATG---HKVGVLGTVSYRWPGHCEAAPLTTPDPLRVHAMLAAMAQA 174

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           GV    +E SSH L+Q R+ G+     SF+NL +DH+D+HQ  ++YF AK RLF EL   
Sbjct: 175 GVDIAVMEVSSHALEQQRVCGVPFAGASFSNLTQDHLDFHQDMESYFRAKSRLFLELPRA 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISV 295
           +    I  DD + + +++       R LS G Q      + +      A  +   + + +
Sbjct: 235 DKVMAINGDDPWGRRLLELCP----RALSFGLQKALPQQRHLWGELLSAGTDGCHLRMHL 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G+ ++   PL G F   N L    L + +G+     L HLE  H V GR E V  N+R 
Sbjct: 291 DGQQWELRSPLVGAFNASNLLSVQALALELGLMPD-DLRHLEGFHGVCGRLERV-PNARK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             ++VDYAHT ++L  +LK +R     RI+ VFGCGG+RD+ KRPIMG+     +D+A++
Sbjct: 349 LHVFVDYAHTPDALVNVLKALRGAGFKRIVTVFGCGGNRDRTKRPIMGEAVARYSDVAVL 408

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           T DNPR EDPE I  ++   +PG  E      + +R +A   A+EML   D L++AGKGH
Sbjct: 409 TSDNPRFEDPEAILKDV---LPGLREDREVVVEVDRRKATAKAVEMLGPDDALLIAGKGH 465

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E   I+  G K    D +++RE+LG
Sbjct: 466 EDYQII-QGTKHHYSDQEVVRELLG 489


>gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
 gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
          Length = 486

 Score =  262 bits (670), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 260/510 (50%), Gaps = 52/510 (10%)

Query: 10  DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   L+  +SI    + E K I  V  DSR ++ G +FVAI G + +GH +I QA   GA
Sbjct: 2   NLKTLLKNISIKASLYEEDKPITSVCFDSRKVEKGSMFVAISGTQSNGHEYIDQATRSGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            AIV      L      +  +   ++V NT   L+L A+  YG   E   ++ VTGT+GK
Sbjct: 62  TAIVCEQLPQL------LFPDVSYIIVPNTHSALALIAANFYGNPSEKLTLVGVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           +++A+ + Q+ +++G  +   G  ST++ +  + R     TTP P+ L   L  +  QGV
Sbjct: 116 TTIATLLYQLFRKAGQKA---GLLSTVAVYIDNQRFEATHTTPDPLQLNHYLHLMVEQGV 172

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSHG+DQHR +G++   G FTNL RDH+DYH+T  AY + K R F+  LP  +
Sbjct: 173 KYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPATA 231

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD           N    + +   Q      KK  A+         +    FD 
Sbjct: 232 FALVNNDDK----------NGAFMLQNTKAQ------KKTYALKTYSDYKAYIIESRFDG 275

Query: 303 LF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           L            L GEF  YN L        +GID    L  +  +  V GRF++   +
Sbjct: 276 LLLRINQHEVWTKLIGEFNAYNLLAVYAAATLLGIDELEALTLISAIEPVAGRFQY-AVS 334

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLA 410
             G    VDYAHT ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+
Sbjct: 335 VTGVITIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLS 394

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T DNPR+E+PE I AE+  G+ P    K     +R +AI++  +   K D++++A
Sbjct: 395 DNVILTSDNPRNEEPETILAEMEQGVQPQHFHKVQTITDRRQAIQSVCKNAKKGDIILIA 454

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           GKGHET   +  G K    D + +RE L L
Sbjct: 455 GKGHETYQEI-KGVKHHFDDFETVREFLEL 483


>gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 496

 Score =  262 bits (670), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 163/464 (35%), Positives = 253/464 (54%), Gaps = 26/464 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V +D+R +  G +FVAI GNK DGH FIP A+A+GA A+VV     + +    +  
Sbjct: 22  EVTGVFNDARLVVPGSVFVAIRGNKLDGHTFIPDAVAKGAAALVVEDKAKIPEGYEGV-- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              ++ V N+R+ L + ASR Y    + +  + VTGT+GK+SV    + I     + +  
Sbjct: 80  ---VVQVPNSREVLDVLASRFYWDPGQELFCVGVTGTNGKTSVTYMTEAILNHGKIPTGV 136

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG  +  +      + +TTP P++L K L    S G   V++E SSH LDQ R+D +   
Sbjct: 137 IGTVNHHLGDQVWPSEMTTPDPVFLQKRLREFRSAGALAVAMEVSSHALDQRRVDSVPFN 196

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH T ++Y  AK RLF +LL K      +A    + +  +R   A  
Sbjct: 197 TVIFTNLTRDHLDYHNTMESYLEAKQRLFTDLLWKTHKRPCFAIVNTADKFGRRLRVADP 256

Query: 266 RVL-SVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            VL + G +   I    LK   A+ + +  T   EG   +   P+ G   V NAL A G 
Sbjct: 257 AVLWTYGEKDSDIRYEILKMDFALTHFKVWTPVGEG---EVRLPMSGTHNVMNALAALGA 313

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379
            ++ G+   + +E L++   VPGR + V  N +   ++VDYAHT ++LE +L  +  +  
Sbjct: 314 GLSAGLPLNICIEALDRFTGVPGRLQSV-PNDKNLSVFVDYAHTPDALENVLMALTKVRE 372

Query: 380 ---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
              +  RI  +FGCGGDRD+GKRP+M ++AL  +D  ++T DNPR+EDP+ I  +I+ G+
Sbjct: 373 NLQSQSRIWTIFGCGGDRDKGKRPLMAEMALKYSDEVVITSDNPRTEDPQTIIQDILAGV 432

Query: 437 PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            G  +       +R +AI   ++   + DV+++AGKGHE   I+
Sbjct: 433 GGANKAKATTVVDRKDAITQTLKRAQEGDVILIAGKGHEDYQII 476


>gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 489

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/485 (35%), Positives = 261/485 (53%), Gaps = 37/485 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E+ +  ++ DSR ++ G+IFVAI G K DGH FI  AI +GA A+V        D+  
Sbjct: 18  FTEKVVLGLTHDSRKVKEGYIFVAIKGYKSDGHDFISMAIEKGAIAVVAEKGV---DYVI 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
               N P +VV N R+ LSL +   YG +P +   I+ +TGT+GK++ + F + I + SG
Sbjct: 75  ----NVPQIVVPNARRALSLLSEYFYG-YPSSKMTIVGITGTNGKTTTSFFTKSIIESSG 129

Query: 142 LSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  IG     + S       TTP  + +   LS + +  + +  +EASSH L QHRLD
Sbjct: 130 NKAGLIGTIYYQLGSRIIPANETTPESVDIQSHLSDMLNNNIRYAVIEASSHALSQHRLD 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+   +  FTNL  +H+DYH+  + Y   K++L   L  + + A++ AD   SK   K  
Sbjct: 190 GVHFRSAVFTNLSAEHLDYHENIKNYREEKIKLMRGL-DENASAVLNADHTSSKYFAKST 248

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311
                 V  + + G    +K   A    + + + V G  F  + P         L G   
Sbjct: 249 ------VAQIVWYG----IKDTSAHVRAEIINMGVNGTRFLLISPWGKEVIHLKLTGNHN 298

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYNAL AA     +G D  ++ + LE L+ VPGR E +    +   + +DYAHT ++L++
Sbjct: 299 VYNALAAATTGFCLGFDMEIIRKGLESLNNVPGRLEKLDY-GQDFHVLIDYAHTHDALQV 357

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ +R I + RII+VFGCGGDRD+GKR  MG IA   +D+  +T+DNPRSEDP  I  E
Sbjct: 358 VLETLRGIAARRIILVFGCGGDRDKGKRAKMGHIAEKYSDLFWITNDNPRSEDPLNIIRE 417

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  GI     +  + +R  AI  A+    K DV+V+AGKGHE   I+ +       DC++
Sbjct: 418 IQRGIKRDSCYKVQLDRKVAIEEALLEAKKGDVVVIAGKGHERCQILKDKSIPFD-DCEV 476

Query: 489 IREIL 493
           ++++L
Sbjct: 477 VKQVL 481


>gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 481

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 167/466 (35%), Positives = 252/466 (54%), Gaps = 44/466 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI--L 93
           DSR I+ G IFVA+ G+  DGH +I QAI  GA+ ++VS           +    P+  +
Sbjct: 28  DSRKIKDGDIFVALEGSISDGHKYIKQAIENGAKGVLVSKK---------VEPEFPVEYI 78

Query: 94  VVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145
           +V + RK L   AS  YG +P+    I+ +TGT+GK++    ++ I       R G   +
Sbjct: 79  LVKDLRKNLGKIASNFYG-YPQKKLKIIGITGTNGKTTSTYLLESILGKEKVARIGTVEY 137

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG     +        TTP  + + K       +G+ ++ +E SSH L   R+D ++  
Sbjct: 138 KIGDEVIEAPN------TTPESLDIVKMCKKAVEKGLEYLVMEVSSHALSLGRVDMLEFD 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             SFTNL  DH+DYH+    YF AK +LF  +L     + I  DD Y   + K       
Sbjct: 192 VASFTNLTLDHLDYHENMDNYFQAKRKLFT-MLKDSKKSSINIDDIYGDRLYKEFGGYSY 250

Query: 266 RVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +  S    G+ +         + Q V +++ G+ F+    + G + +YN L   G+ + 
Sbjct: 251 SLTKSADLTGEIVEFHS-----DGQFVRLNLMGEMFEEKLAILGRYNLYNVLGVIGIALQ 305

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITS 381
           +GI   ++LE L+ +   PGRFE V      G+ Y   VDYAHT ++LE ILK+I  +  
Sbjct: 306 LGIGKNIILEKLKDIKGAPGRFELVNC----GQDYIVVVDYAHTGDALENILKSINELKK 361

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--F 439
           GR+I VFGCGGDRD  KRPIMG+IA  L+DIAI+T DNPR+E+P  I  ++  G+ G  +
Sbjct: 362 GRVITVFGCGGDRDATKRPIMGEIAQRLSDIAILTSDNPRTENPHLIIEDVKKGMNGDHY 421

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           + + +R +AI  AIE+  K D++++AGKGHET  I+  G KK+  D
Sbjct: 422 LVEEDREQAIVKAIEIAQKNDIILIAGKGHETYQIL--GRKKIHFD 465


>gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
 gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
          Length = 507

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/479 (33%), Positives = 245/479 (51%), Gaps = 33/479 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR ++ G +FVAI G KEDG  FI +A+++GA A+V               S 
Sbjct: 24  VTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSRGAVAVVSEKPVP--------SSQ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P   V + RK L+L A+  YG+  +   +L +TGT+GK++ +  ++ +   +  S+  I
Sbjct: 76  VPFFKVSSARKALALIAANFYGRPADQLTLLGITGTNGKTTTSYLLEAMSTAAYASTGVI 135

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G      +    +   TTP P+ L + L  +   GV  V +E SSH L Q R+ G+   A
Sbjct: 136 GTLGYKFAGRTVECANTTPDPLELHRILREMVEAGVETVIMEVSSHALAQERVHGLTFKA 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             F+NL RDH+DYH+  + YF +K +LF E L     A++  DD Y+  +          
Sbjct: 196 AGFSNLSRDHLDYHKDMEDYFQSKRKLFAENLSATGVAVVNGDDTYASRIYNEQRGQKRM 255

Query: 267 VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                 QG   I    V       +  +     D      L G   + N L+A G+ +  
Sbjct: 256 AWKFSRQGSGEISAADVSFSLQGIKGVLKTPAGDIPLKSKLLGPHNLENILLAVGIGLGA 315

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITSGR 383
           G     V E +E++  V GR E V      G   + VDYAHT ++L+  ++  R++  GR
Sbjct: 316 GFARRDVQEGIERMMPVAGRMERVENYGPSGAPAVLVDYAHTDDALKRSIEAARSLAKGR 375

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           +I VFGCGGDRD+GKRP+MG +A + AD+A+VT DNPR+EDPE+I +++  GI       
Sbjct: 376 VIAVFGCGGDRDKGKRPLMGAVAGEGADLAVVTSDNPRTEDPEEIISQVTAGIEKSGLRR 435

Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                      G++   +R  AI  AI + +  DV+++AGKGHET   V  GE+K+  D
Sbjct: 436 ISAGKAKSGEKGYLVDADRRAAIEQAISLASADDVVLIAGKGHETYQQV--GEEKLVFD 492


>gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
 gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
          Length = 498

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 175/515 (33%), Positives = 270/515 (52%), Gaps = 52/515 (10%)

Query: 9   KDFPELINQLS-IFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           K   EL  ++  I+ +  R+  +I  +S+DSR I+ G++FV I G   DG  F  QA+ +
Sbjct: 2   KTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVEK 61

Query: 67  GAEAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           GA A++ +    L  + +     +    + D    F      ++       ++ VTGT+G
Sbjct: 62  GAVAVLTNKHLDLPLEITQITVPDIHAALEDIVPYFYDYPGKKM------RMIGVTGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181
           K++ +  +  I + +G   + +G   TI +   D  L    TTP  + L   L+ + ++G
Sbjct: 116 KTTTSHIIAHILREAG---YHVGVIGTIHALIDDKELEIHNTTPDVVELQALLALMCAEG 172

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---- 237
           + +V +E SSH L  +R+ GI+     FTNL +DH+D+H++ + Y  AK +LF  L    
Sbjct: 173 MDYVVMEVSSHALALNRVAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFSGLTAEP 232

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            + K   A+I  DD ++ E++K      C+VL+ G + K   LK          + + ++
Sbjct: 233 PVKKNKTAVINIDDPHADEILKAT---SCKVLTYGVE-KDADLKG-------SNLQVGLK 281

Query: 297 GKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              FD + P         + G F VYN L A G   A G+D+ ++ + ++  + VPGRFE
Sbjct: 282 SSSFDVVGPFVSVSLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFE 341

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V    +   I VDY+HT +SLE  L   R +   RII VFGCGGDRD+ KRPIMG IA 
Sbjct: 342 LV-EAGQDFAIVVDYSHTPDSLEKALTTARAMKPNRIITVFGCGGDRDRTKRPIMGGIAA 400

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQD 460
             ADI IVT DNPRSEDPE I +E+  G+   +++G R E       AI  AIE+    D
Sbjct: 401 QYADIPIVTSDNPRSEDPEFIISEVEGGVRAALKEGQRHEVIVDRRQAIYKAIEIAEPGD 460

Query: 461 VLVVAGKGHETVHIVTNGE---KKMSVDCDIIREI 492
           ++++AGKGHET  I+ +G        V  D +RE+
Sbjct: 461 IVLIAGKGHETYQILKDGTIHFDDREVARDAVREL 495


>gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 463

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 245/458 (53%), Gaps = 40/458 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR ++ G +F+ I G   DGH +   A+  GA A++     SL         N P+
Sbjct: 3   LENDSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAERELSL---------NVPV 53

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ++V +T + +++ A   YG+  +  +++ +TGT+GK++ +  +++I   +G S+  IG  
Sbjct: 54  IIVKDTARAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGTM 113

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            T ++    + + TTP  + L K  + +  + V    +E SSH LD+ R+ G       F
Sbjct: 114 YTKVAGETLETKNTTPESLTLQKTFASMVEKKVEAAVMEVSSHALDEGRVHGCDFNVAVF 173

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLP-----KESPAIIYADDAYSKEVMKRAHNAG 264
           TNL +DH+DYH+T   Y  AK  LF +L       K   A++ ADD  S E  K   +  
Sbjct: 174 TNLTQDHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRK---STA 230

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNA 315
            ++L+     +      + A+H    + +   G  FD + P         L G+F VYN 
Sbjct: 231 AQILTYAIDNE----ADLRAVH----IQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNV 282

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G  +A G++   +LE +  +  VPGRFE V    +   + VDYAHT +SLE  L+ 
Sbjct: 283 LAAIGAALASGLELEAILESISTVKGVPGRFETVDAG-QDFSVIVDYAHTPDSLENALET 341

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++    GRI VV GCGGDRD+ KRP+M KIA  LA  A+ T DNPRSEDPE+I  ++  G
Sbjct: 342 VKEFAEGRIFVVVGCGGDRDRTKRPLMAKIACGLATDAVFTSDNPRSEDPEEILKDMAAG 401

Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +P   +    +R EAI  ++    K DV+++AGKGHET
Sbjct: 402 VPEGNYTMIADRKEAIAYSVGAAGKGDVILIAGKGHET 439


>gi|256827373|ref|YP_003151332.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
 gi|256583516|gb|ACU94650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
          Length = 494

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 250/461 (54%), Gaps = 19/461 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ ++  S  + AG  F  IVG   DGH F   AI  GA  IV      L D +  +
Sbjct: 21  DEPVSGIAYRSDAVTAGDAFFCIVGTNVDGHSFAQDAIDHGARVIVAQRKVYLADATDVV 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143
                 ++V +TR+ ++  A+  YG HP    +++ +TGT+GK++    V+ I + +G +
Sbjct: 81  E-----IIVSDTRRAMAAAAANFYG-HPSTDFHLVGITGTNGKTTTTYLVEHIAEVAGRT 134

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     I+   +    TTP  + L    + +   G   V++E SSH LD  R  G 
Sbjct: 135 TGVIGTVGNRIAGRLEHAERTTPESVDLQHLFARMRDAGCDTVAMEVSSHALDLERTWGT 194

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                +F+NL +DH+DYH+T +AYF AK  LF    P     +I  DD + +E+++R   
Sbjct: 195 HFAVTAFSNLTQDHLDYHKTFEAYFEAKALLFSSDYPARR--VICIDDKWGQELLRRCAA 252

Query: 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           AG R+LSVG+     IH   V        V + V G+++   +PL G F V N ++A G+
Sbjct: 253 AGDRILSVGFDPAAQIHPVSVKYATTHTDVVLDVRGQEYSLTYPLVGRFNVSNVMLALGI 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTIT 380
            + +GI   +VL  L +   VPGR + +     GG  ++VDYAHT ++L   +  +  +T
Sbjct: 313 GLELGIPIEVVLRALSESPQVPGRLQRISAVHDGGISVFVDYAHTPDALRKAISAVANLT 372

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR+IVVFGCGGDRD  KRP+MG+ AL   D A+VT DNPRSEDP+ I ++I+ G+    
Sbjct: 373 DGRVIVVFGCGGDRDATKRPLMGQAALS-GDFAVVTSDNPRSEDPDAIISDILEGMESAS 431

Query: 441 EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           E+     +R EAI  AI + N  D ++VAGKGHE   I+  
Sbjct: 432 ERFEVHPDRREAIARAIALANTGDAILVAGKGHEDYQILAT 472


>gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 485

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 185/496 (37%), Positives = 268/496 (54%), Gaps = 67/496 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I+ ++ DSR ++ G +FVAI G K DGH FI QAI  GA  ++     +L +    I
Sbjct: 21  EVEISSIAYDSRKVKKGGLFVAIKGFKLDGHDFIGQAINNGAVVVIGEKEINLPEDVLYI 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +       V N+RK LS  +S  +GK  E  N++ VTGT+GK++    ++ I   +G S+
Sbjct: 81  K-------VKNSRKALSEASSLFFGKPAERLNVIGVTGTNGKTTTTYLIKAILDEAGYST 133

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              G   TI    ++  L    TTP  + L +  S +  +GV +V++E SSH L  HR+D
Sbjct: 134 ---GVVGTIGIRIKERLLPAERTTPESLELNEIFSEMVKEGVEYVTMEVSSHSLKLHRVD 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--------------ELLPKES--PA 244
            +K   G FTNL +DH+D+H + + Y+ +K +LF+              E L  E   P 
Sbjct: 191 HVKFEVGVFTNLTQDHLDFHVSFEDYYASKKKLFDLSRKAVINVDDESGERLCSELNIPV 250

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I YA     K    RA N       V Y+        VCA   ++++T           +
Sbjct: 251 ITYA---IEKNADVRAENVVIGSDGVSYE--------VCAGGERRKIT-----------Y 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG F VYN+L A   C+++GID   + + LEK+  VPGRFE V    +   + VDYAH
Sbjct: 289 KVPGRFSVYNSLAAISACLSLGIDLETMAKALEKVRGVPGRFEPV-DEGQDFTVIVDYAH 347

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T + LE +L  ++T   GRII VFG GGDRD+GKRP+MGK+  + +D  I+T DNPR+ED
Sbjct: 348 TPDGLENVLNTVKTFARGRIITVFGAGGDRDRGKRPLMGKVVSERSDYFIITSDNPRTED 407

Query: 425 PEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           P+ I  +I  G+    E+ N      R EAIR AIEM    DV+++AGKGHE   I+  G
Sbjct: 408 PQAIIDDIEKGVT---ERSNYEKIIDRREAIRRAIEMALPGDVVLIAGKGHEDYQII--G 462

Query: 479 EKKMSV-DCDIIREIL 493
           +K +   D ++ RE L
Sbjct: 463 DKVLHFDDREVAREFL 478


>gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 484

 Score =  260 bits (665), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 255/475 (53%), Gaps = 24/475 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           EV +DSR +  G IFVA+ G +EDG  FIP A   GA  ++V  A S +  +A       
Sbjct: 18  EVRADSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGA-GVIVCRADSEEAAAAATAGCRV 76

Query: 92  ILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +   D       L  +R +    P  I+ VTGT+GK++    ++++  ++G    ++G  
Sbjct: 77  VHHADPREALWRLAQARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAG---HKLGVM 133

Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T+S       +   LTTP  + +   L+ ++  GV    +E SSH +DQ R+ G+    
Sbjct: 134 GTVSYRWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEVSSHAIDQQRVCGVPFSG 193

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL +DH+DYH+  ++YF AK RLF EL   +    + ADDA+ + +++    A   
Sbjct: 194 AAFTNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLELCPTA--- 250

Query: 267 VLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            LS G Q      + +  + + +      + +S+E   ++   PL G F   N L    +
Sbjct: 251 -LSFGLQKGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAV 309

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +GID     + LE    V GR E V  N +G  ++VDYAHT ++LE +LK +R    
Sbjct: 310 ALEMGIDPE-AFKALESFTGVSGRLERV-ENPQGLNVFVDYAHTPDALENVLKALRDAGF 367

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            R+I VFGCGG+RD+ KRPIMG+     +D+A++T DNPR EDPE I  +++ G+    E
Sbjct: 368 ERVITVFGCGGNRDRSKRPIMGEAVARWSDVAVLTSDNPRFEDPEAILKDVLPGLADAKE 427

Query: 442 ---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              + +R EA   A+ ML K+D L++AGKGHE   I+  G K    D +++REIL
Sbjct: 428 VVVEVDRREATTRALGMLGKKDALLIAGKGHEDYQII-QGVKHHYSDQEVVREIL 481


>gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 510

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 168/492 (34%), Positives = 267/492 (54%), Gaps = 44/492 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL++  S F +   + +++ VS DSR I+  + F ++ G+  DG  +I +AIA GA  I+
Sbjct: 5   ELLSDESAFVIGDEDTEVSGVSYDSRKIEKDYAFFSLPGHNTDGRKYIAEAIANGASVII 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSV 129
             S Y   D +         +V+ +  +F+SLF ++ Y  +P+   NI+ +TGT+GK++V
Sbjct: 65  TDSKYDTNDVAQ--------VVIKDIFRFMSLFGAKFYN-YPDRELNIMGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ I   SG+    IG  +        +   TTP  + + + +  +S+ G+ ++ +E
Sbjct: 116 TYMIESILANSGIECGVIGTVNYRYKGKVIEANNTTPQSLDIYRIMRDISNNGIKYLVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPA 244
            SSH L   R+ GI+     FTNL R+H+D+H+    YF AK  LF+EL       +  A
Sbjct: 176 VSSHALSLGRVYGIEFDTAVFTNLTREHLDFHKNMDRYFEAKSALFKELGAGKKNNKKCA 235

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II  DD Y ++++K   +A  ++ S         ++K  A      + ++ +G  F+ +F
Sbjct: 236 IINVDDEYGRKLLKVGISAEIKLYSA--------IEKNAADFKASNIKVTNKGAVFNLVF 287

Query: 305 PLP---------GEFQVYNALVAAG--LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       G   VYNAL A    +C  I  ++A+  E L     VPGR E V T  
Sbjct: 288 CNKRARIRIKHIGVHNVYNALAALAAAVCSEISFENAV--EGLNNSSRVPGRLEKVNTIG 345

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  I VDYAHT ++LE +L+ ++ +   RII+VFGCGGDRD+ KRP+MGKIA++++D  
Sbjct: 346 LGFEIVVDYAHTDDALESVLRALKDLNPKRIIIVFGCGGDRDRAKRPLMGKIAVEMSDFV 405

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEM-LNKQDVLVVAGK 467
            VT DNPR+EDP +I  +I  GI    +K      +R  AI+  I M  +K D++++AGK
Sbjct: 406 FVTSDNPRTEDPYQIILDIEVGIKRAGKKNYKVVVDREAAIKEVIMMAADKGDIILLAGK 465

Query: 468 GHETVHIVTNGE 479
           GHET  I + G+
Sbjct: 466 GHETYQITSGGK 477


>gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium johnsoniae UW101]
 gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium
           johnsoniae UW101]
          Length = 487

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 168/504 (33%), Positives = 268/504 (53%), Gaps = 38/504 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   E +   +   +Q       ++  DSR +++  +FVAI G+  DGH +I +
Sbjct: 4   LKDILYKVTIESVTGSTDIDIQ-------KIEFDSRKVESNDVFVAIRGSLSDGHDYIEK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI  GA+AI+             I+ +   + V +T   L+  A+  +G     +  + V
Sbjct: 57  AIQLGAKAIICDK------LPENIQKDVTYIQVKDTNTALAFMAANYFGDPSAKLKLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176
           TGT+GK+++AS + Q+ +++G   F++G  ST+             TTP  + +   L+ 
Sbjct: 111 TGTNGKTTIASLLFQLFEKAG---FKVGLLSTVKIVVDKTEYPATHTTPDSLTINHYLNE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  GVTH  +E SSHG+ Q R + +  + G FTNL  DH+DYH T   Y + K   F+ 
Sbjct: 168 MAEAGVTHCFMEVSSHGIHQKRTEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKKSFFDS 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK +  +   DD     +++   N   + L+   +    +      I   Q   + ++
Sbjct: 228 L-PKTAFVLSNIDDKNGSVMLQ---NTAAKKLTYALKS---YADYRAQILESQLSGLLLK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D +    L G F  YN L   G  + +GIDS   L  L  L  V GRF+++ +++ G 
Sbjct: 281 VNDNEVWVKLIGTFNAYNVLAIYGTAVELGIDSLEALRLLSDLESVSGRFQYIVSDN-GI 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +LK I  I +   ++I V GCGG+RD+ KRPIM KIA DL+D AI
Sbjct: 340 TAVVDYAHTPDALENVLKTINDIRTKNEQLITVVGCGGNRDKTKRPIMAKIATDLSDKAI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR+EDPE I  E+  G+ G   K      +R +AI+TA ++   +D++++AGKGH
Sbjct: 400 LTSDNPRNEDPEVILDEMEQGVEGHNYKKVLRITDRKQAIKTACQLAQSKDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + NG +    D + ++EIL
Sbjct: 460 ETYQEI-NGVRHHFDDMETVKEIL 482


>gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
 gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia rickettsii]
 gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 479

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 259/488 (53%), Gaps = 43/488 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA        + IV+   
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDKV 68

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++D  A +     I                 Y K P++++AVTGT+GKSSV S++ Q 
Sbjct: 69  IYVKDVQAALYEAIEIF----------------YPKKPKDLIAVTGTNGKSSVVSYIAQT 112

Query: 137 CQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
               G  +  IG T  +  F   N       LTT   +   K    L+  G+ ++  EAS
Sbjct: 113 YSLLGKKAASIG-TIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEAS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D 
Sbjct: 172 SHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDI 231

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + V    HN   + ++VG +G     +  C++   Q +  +   ++++F  P+ G F
Sbjct: 232 EEIEFVKDYLHNHNVKFITVGTKGDLEITRLNCSLKG-QNINFTFNNREYNFNTPIIGSF 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q  N L+A      IG     V++ L ++  V GR E +   +    I+VDYAHT ++LE
Sbjct: 291 QASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALE 346

Query: 371 MILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ I
Sbjct: 347 KALTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLI 406

Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485
           RAEII GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+  G+KK+   D
Sbjct: 407 RAEIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDD 464

Query: 486 CDIIREIL 493
            +++R+ +
Sbjct: 465 AEVVRKCI 472


>gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 497

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 163/489 (33%), Positives = 257/489 (52%), Gaps = 36/489 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E  +  ++++S+ ++  + F AI G   DGH FI +AI  GA  I +     ++     
Sbjct: 18  QETAVEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKNGASVIFIEDEKYIESLKG- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
              N  +++ DN RK L+L ++R Y    E   ++A+TGT+GK++ ++ + Q  + +G  
Sbjct: 77  --KNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKTTTSNLLAQYYEMAG-- 132

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            +++G   TI+    D  L    TTP P+   K L  +  +G   V  E SSH  DQ+R+
Sbjct: 133 -YKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVSSHAADQYRV 191

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVM 257
              K   G FTNL +DH+DYHQT + YF AK R+FE++    KE+   I  DD + + ++
Sbjct: 192 YSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQIDKFNKEAIYSINVDDEHGRRIL 251

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPG 308
               N     L V    K I   K           +S+   +F + +          L G
Sbjct: 252 DYLKNH----LKVN-DDKIITYGKTSEDFKILDYRLSLFETEFSYKYKDTLSKIKTKLRG 306

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F +YN        I  G D   + E    L  + GRFE +    +G  + +DYAHT ++
Sbjct: 307 VFNIYNLSATVSFLIKDGFDLKFLEEKALHLKPIKGRFEVI--EGQGFIVVIDYAHTPDA 364

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE ILK++  I   RII VFG GG+RD+ KRP+MG+ A  L+D+ I+T DNPR+EDP  I
Sbjct: 365 LENILKSLNEIKENRIITVFGAGGNRDKTKRPLMGETAESLSDVVILTSDNPRNEDPLSI 424

Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV- 484
             +I+ GI      I   +R +AI  AI +  ++D++++AGKGHE   I+  G+K +   
Sbjct: 425 IEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKGHENYQII--GDKILHFD 482

Query: 485 DCDIIREIL 493
           D ++++EI+
Sbjct: 483 DAEVVKEII 491


>gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
 gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
          Length = 479

 Score =  260 bits (664), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 259/478 (54%), Gaps = 27/478 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  S+     
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKSI----- 63

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q     G  +
Sbjct: 64  ---VIDKVIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120

Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             IG T  +  F   N       LTT   +   K    L+  G+ ++  EASSHGLDQ R
Sbjct: 121 ASIG-TIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQAR 179

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D      V  
Sbjct: 180 LREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIDFVKD 239

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             HN   + ++VG +G  + + ++      Q +  +   ++++F  P+ G FQ  N L+A
Sbjct: 240 YLHNHNIKFITVGTKGD-LEITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIA 298

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 IG     V++ L ++  V GR E +   +    I+VDYAHT ++LE +L  ++ 
Sbjct: 299 VLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALEKVLTELKN 354

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRAEII GI
Sbjct: 355 IKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISGI 414

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIRE 491
               + E  NR EAI+  I  L + D+L+VAGKGHE   I+  G+KK+   D +++R+
Sbjct: 415 EKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDDAEVVRK 470


>gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
 gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
          Length = 505

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 163/493 (33%), Positives = 265/493 (53%), Gaps = 39/493 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR I+  ++FVA+ G+  DGH FI  A+  GA+ I+      ++ ++ T  +
Sbjct: 20  EIRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMIICEKEVDVKQYTNT--T 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               ++V++ RK L + AS  Y  +P+N   I+ +TGT+GK++ +  ++ I +++     
Sbjct: 78  EITFVLVEDIRKKLGIIASNYYD-YPQNKIKIVGITGTNGKTTSSFILENILEKTA---- 132

Query: 146 QIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +IG T        F   N  TTP  + L K +     +G  +  +E SSH L+  R+D +
Sbjct: 133 RIGTTGNRILDEEFQTVN--TTPESLELIKLIDKSVKKGADYFIMEVSSHALEIGRVDML 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI--IYADDAYSKEVMKRA 260
           +  +  FTNL +DH+D+H+T + YFNAK ++F  L    S  +  I  DD Y  ++    
Sbjct: 191 QFDSAIFTNLTQDHLDFHKTMENYFNAKKKMFSMLRNNNSQGVGVINIDDEYGAKIYSEK 250

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------DFDFLFPLP 307
            +     +SV  +   I    +   +N  ++ I++E               ++ F   L 
Sbjct: 251 KDNNYISISVRNENADIWGDILNYTNNGMKIKINLENYLEKNKHNLKNSDGEYKFEINLI 310

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE+ +YN L      +++GI+ ++++E L+++ VVPGRFE +  N    RI VD+AHT +
Sbjct: 311 GEYNLYNVLGCVASALSLGIEMSVIVEKLKEMPVVPGRFETI-KNELEARIVVDFAHTDD 369

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L  I K ++ IT  R+I +FG GGDRD  KRP M K A   +D  I+T DNPR+E+P  
Sbjct: 370 GLLNIGKTLKQITDKRVITIFGAGGDRDHEKRPKMAKAAAKFSDYIILTSDNPRTENPVN 429

Query: 428 IRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           I A+I  G+         ++   +R  AI+  I+ML K D L++AGKGHET  I+   EK
Sbjct: 430 ILADIEKGLIDEKYPFDKYLIISDRERAIKYGIKMLEKDDSLLIAGKGHETYQIIGT-EK 488

Query: 481 KMSVDCDIIREIL 493
               D +I+R+IL
Sbjct: 489 THFDDREIVRKIL 501


>gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
 gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
          Length = 493

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 163/475 (34%), Positives = 254/475 (53%), Gaps = 17/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA++G   DG  FI  AI QGA A +  +       +  I  +
Sbjct: 25  VSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   + LS  A ++Y     +++ VTGT+GK+++   + Q  +     +  +G 
Sbjct: 85  VPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDHKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  Q    TT + + + K LS L++Q  T+ ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF +   +   AII  DD    +   +  NA    +
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLGLFTQ--HQCERAIINVDDEVGHQWASQLSNA----I 258

Query: 269 SVGYQGKFIHLKKVCAI---HNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
           +V  +        + A    + +  +TI  +GK        PL GEF   N ++A    +
Sbjct: 259 AVSLKANTEFESAIWATEVSYAESGITIKFDGKFGSGKLHAPLIGEFNATNLMLAFATLL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G +   +LE   +L  V GR E   T  R  ++ VDYAHT ++LE  L+ +R    G+
Sbjct: 319 SLGKEKQALLETAGQLQPVLGRMELFQTEDRA-KVVVDYAHTPDALEKALQALRVHCEGQ 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP +I  +++ G+    E  
Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDMLAGLSKPAEAI 437

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            + +R +A+  AIE  +  D++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 438 VQHDRFKALSYAIENASPNDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2]
 gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2]
          Length = 514

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 175/507 (34%), Positives = 267/507 (52%), Gaps = 46/507 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +  P     L        + +I  + +DSR ++ G +F+A+ G K DGH ++
Sbjct: 1   MKLSYLLKECTPLWRRSLDPASDPGSDPEITSIHNDSRDVKPGGLFIAVRGFKIDGHDYV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+ +GA A+VV            +     ++ V +TRK ++  A+R Y    E+  ++
Sbjct: 61  EDALERGAAAVVVQQ---------RVPGKQRMVEVADTRKAMASIAARFYDNPSESMCLV 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ I  ++G     IG  +        +N +TTP  I L + L+ +
Sbjct: 112 GITGTNGKTTTSFILESIFAQAGHCVGVIGTVNFRYRGKLFNNPVTTPESIDLQRILAQM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V+HV +E SSH +D HR+   +  AG FTNL +DH+DYH+T   YF  K R F  +
Sbjct: 172 KAAQVSHVVMEVSSHSIDLHRVRNCRFDAGVFTNLTQDHLDYHRTMGRYFACKRRFFTRI 231

Query: 238 LPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LP       + A+I  DD   + +      A  +V++ G   +      VCA+   + +T
Sbjct: 232 LPSGPKALTAMAVINLDDEKGQALRD---AAATKVVTTGRDSR----ADVCALDLAETIT 284

Query: 293 -----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                + ++G  + F   L G F V N L AAG   AIGID  +++  +E    VPGR E
Sbjct: 285 GTTGILKIDGAPYPFSSALVGAFNVENILSAAGAAHAIGIDPQVIVRGIEGCKGVPGRLE 344

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V  ++ G  ++VDYAHT ++L  IL+ ++     RII V GCGGDRD+ KRPIMG+IA 
Sbjct: 345 RVEPDN-GRHVFVDYAHTPDALMSILETLKAQAPKRIITVVGCGGDRDRSKRPIMGQIAA 403

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP----------------GFIEKGNRIEAIRT 451
            L+D+AI+T DNPRSEDP  I  EI+ GI                 GF  + +R +A+  
Sbjct: 404 TLSDVAIITSDNPRSEDPHGIIQEILKGIDTALCPELKPDQLKTGNGFFVEPDRRKALEL 463

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNG 478
           A+      D+LV AGKGHET  I+  G
Sbjct: 464 AVAASTPGDILVAAGKGHETYQILKGG 490


>gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
 gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
          Length = 485

 Score =  259 bits (662), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 251/475 (52%), Gaps = 42/475 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK N +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS           +
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSK-------EVEM 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI-----CQ 138
           + N   +++D+ R  L   AS  Y + P+    I+ VTGT+GK+S    ++++       
Sbjct: 71  KYNVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVT 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G   +++G       F   N  TTP  + L K       + + +V +E SSH L+  R
Sbjct: 130 RIGTIEYKVGD----EVFDAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGR 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +D I      FTNL +DH+DYH T + YF AK +LF +L  K + ++I  DD Y K +  
Sbjct: 184 VDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDK-NDSVINIDDDYGKRLYD 242

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                   ++S G  G  +  + +      I  K+QV            F L G+F +YN
Sbjct: 243 EFIIDNPEIISYGIDGGDLEGEYLDDGYIDIKYKEQVE--------KVKFALLGDFNLYN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++ 
Sbjct: 295 TLGAIGIALKIGISMEEILKRVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIV 353

Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++ 
Sbjct: 354 AARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVK 413

Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G      +I + +R +AI+ A+ M  K D++++ GKGHET HI+  G KK   D
Sbjct: 414 KGFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
 gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
          Length = 500

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 265/504 (52%), Gaps = 41/504 (8%)

Query: 1   MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+LQDL+       ++ ++S         ++ +V++DSR    G +F+A+ G+  DGH F
Sbjct: 1   MRLQDLVSALLHVRVVGEISAV-------EVTDVTADSRTAGPGSLFIALRGHTVDGHAF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
           + +A   GA A VV            + +  P +VV +TR+  ++ A+  + +HP     
Sbjct: 54  VDEARRSGAVAAVVEDC---------LDTPLPQIVVPDTRRAAAVLAAVFF-RHPSRAMR 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK++V   +  + +  G  +  IG   T I   +     TTP  + L +  +
Sbjct: 104 VIGVTGTNGKTTVTHLIDHLLRAGGARTGLIGTIQTRIGDRSSGAVNTTPEAVELQRLFA 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   GV+H  +E SSH L+  R+ G +     FTNL +DH+D+H + +AY  AK +LF 
Sbjct: 164 QMRDAGVSHAVMEVSSHALELDRVAGTRFHTAVFTNLTQDHLDFHGSMEAYREAKGKLFA 223

Query: 236 EL-------LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            L          ++ A++  DD   K  M R   A      V      +  ++V      
Sbjct: 224 RLGNEYGDTRADQAFAVVNLDDPVGK-WMARQTTAQTVTYGVDRPAD-LRAREVEVDTRG 281

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +    +EG+      PLPG F VYN L A G     G+D   + + L ++  VPGR E 
Sbjct: 282 VRFVAEIEGRRTRVHVPLPGRFSVYNTLAAMGAGWIQGLDLDWMADQLARVSGVPGRMER 341

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V      G + VDYAHT +SL+ +L+ +R + SGR+IVVFGCGGDRD+ KRP+MG+IA  
Sbjct: 342 VDAGQPFG-VVVDYAHTPDSLDNVLQALREVASGRLIVVFGCGGDRDRTKRPLMGRIAYT 400

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDV 461
            AD AI+T DNPR+EDPE+I  +I  G+         +    +R EAIR AI +  ++DV
Sbjct: 401 RADYAILTSDNPRTEDPERILDDIEAGLREIGADTSRYERISDRTEAIRRAIHLAGEKDV 460

Query: 462 LVVAGKGHETVHIVTNGEKKMSVD 485
           +++AGKGHET  I+  G +K   D
Sbjct: 461 VLIAGKGHETYQII--GRRKFPFD 482


>gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
 gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
          Length = 494

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/456 (34%), Positives = 240/456 (52%), Gaps = 14/456 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++  DSR I+ G IFVAIVG+  DG  FI +A+AQGA+A+V  ++           + 
Sbjct: 27  VEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHGLVEWLNA 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V      LS  A R+Y      ++ VTGT+GK+++   + Q     G  S  +G 
Sbjct: 87  VPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146

Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           T   + F  + +    TT S I + + LS L+ +   + ++E SSHGL Q R+  +    
Sbjct: 147 TG--NGFLDNLKTAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEV 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
           G FTNL RDH+DYH T + Y  AK RLF +   K   A+I  DD   K  M    NA   
Sbjct: 205 GVFTNLSRDHLDYHGTMEEYALAKKRLFTQ--HKCKHAVINVDDEVGKAWMADLSNAIAV 262

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +L +    + +    V       +++        D   PL G+F   N LVA    +++
Sbjct: 263 SLLPLSDYQQSVWASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFATLLSL 322

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GID   +++   +L  V GR E     S+  ++ VDYAHT ++LE  L  +R   SG++ 
Sbjct: 323 GIDKQTLVDTASQLQPVIGRMELFQVPSKA-KVVVDYAHTPDALEKALAALRVHCSGKLW 381

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIE 441
            +FGCGGDRD GKRP+M   A   AD  I++DDNPRSEDP  I  +++ G+      F+E
Sbjct: 382 AIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPESAFVE 441

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             +R +A++ A+E     D++++AGKGHE   ++ +
Sbjct: 442 H-DRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKD 476


>gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
 gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
          Length = 480

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 168/471 (35%), Positives = 260/471 (55%), Gaps = 26/471 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++ K+  +S +S+ ++   +F  + G   D + FI  A+ Q A A+V++        SA
Sbjct: 9   FKQYKVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQ-AVALVITDNKK----SA 63

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           TI     I+ V++ +  L       Y K P+N++AVTGT+GKSSV S++ Q     G  +
Sbjct: 64  TI---DKIIYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120

Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             IG T  +  F  DN       LTT   +   K    L+   + +++ EASSHGL+Q R
Sbjct: 121 ASIG-TIGVEIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQAR 179

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L  IK+    FT+  +DH+DYH T++ Y  AK++LF E L +   AI+ +D    + +  
Sbjct: 180 LGEIKVNIACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIEEIEFIKD 239

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              N   + ++VG +G  + + K+      Q ++ +   ++  F   + G FQ  N L+A
Sbjct: 240 YLLNHNIKFITVGKKGD-VQITKINGSLKGQNISFAFNNRECSFNTSIIGSFQASNLLIA 298

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A     IG D   ++E L ++  V GR E +   +    I+VDY+HT ++LE  L  ++ 
Sbjct: 299 ALSIHYIGCDFNKIVEILTQVKPVKGRMERIDNTN----IFVDYSHTPDALEKALTELKN 354

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I     ++IVVFGCGG+RD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEII  I
Sbjct: 355 IKLRDSKLIVVFGCGGNRDKTKRSLMGQIAAKLADTVIITDDNPRHEDPKLIRAEIISCI 414

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               ++E  NR EAI+  I  L + D+L++AGKGHE   I+  G+KK+  D
Sbjct: 415 EKADYMEIANREEAIKYGINNLKQDDILLIAGKGHENYQII--GDKKLPFD 463


>gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
 gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
          Length = 509

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 169/499 (33%), Positives = 249/499 (49%), Gaps = 39/499 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           IN L I      E  ++ V  +SR      +FVAI G K DGH +I  A+  GA+ IV  
Sbjct: 10  INILGISGPSGSEVNVSSVCYNSRQCTPDSLFVAIRGLKSDGHEYIDDAVRCGAKVIVCE 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVASF 132
              ++      +R       V+N R+ L L A   Y      ++AV   GT+GK++V   
Sbjct: 70  KEVTMPPEITVVR-------VENGRRTLGLLARNFYADPSRCLVAVAVMGTNGKTTVTYI 122

Query: 133 VQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           ++ I Q +G S   +G  +        +   TTP  + L + +  +   GVTH+  E SS
Sbjct: 123 LESIFQAAGFSCGVLGTVNYRYPGLVMEAPNTTPESLDLQRIIREMVDHGVTHLVAEVSS 182

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-----KESPAII 246
           H +D  R+D      G FTNL +DH+DYH+T + YF AK R F E+LP           +
Sbjct: 183 HAVDLRRIDDCDFDLGIFTNLTQDHLDYHKTMENYFQAKKRFFSEVLPGGRKQHRYAMAV 242

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            ADD + K +++       R L+ G + K  I         +  +  I V    FD    
Sbjct: 243 NADDPWGKRLIRETGEIS-RPLTFGIEEKADIRASSFDLSLDGIRAEIVVGSMSFDVDTA 301

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F +YN L A    +A+ +    +   +  ++ VPGR E V + S    ++VDYAHT
Sbjct: 302 LIGKFNLYNVLAAVSASVALRVPIEAIRRGVRAMNAVPGRLEKV-SGSTQPDVFVDYAHT 360

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L+++     GRII VFGCGGDRD+GKRP+MGK+A + +D+ I+T DNPRSEDP
Sbjct: 361 DDALRRVLQSLSPFKRGRIITVFGCGGDRDRGKRPLMGKVATNYSDLTILTSDNPRSEDP 420

Query: 426 EKIRAEIIHGIP-------------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I  +I  GI                    G++   +R EAI  AI      D++++AG
Sbjct: 421 LSIIRDIEVGINSQSIPEGSSEDLSRGMTGRGYVVIPDRREAIGAAIRSARPSDIVLIAG 480

Query: 467 KGHETVHIVTNGEKKMSVD 485
           KGHE   I+  GEK++  D
Sbjct: 481 KGHEDYQII--GEKRLFFD 497


>gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
 gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
          Length = 502

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 245/456 (53%), Gaps = 31/456 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR +QA  +FVA+ G + DGH +I QA+A GA+ +V  +      F   +  +
Sbjct: 24  IENIHFDSRKVQANDLFVAVKGTQADGHQYIGQAVALGAKVVVCET------FPKNLSDS 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + V N+ K L   AS  Y  HP     ++ +TGT+GK++  + + Q+ ++ G   ++
Sbjct: 78  ATYIQVANSAKALGWLASNYY-DHPSKKLKLVGITGTNGKTTTVTLLHQLFRKFG---YR 133

Query: 147 IGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  STI ++  D     RLTTP P+ L + ++ +   G TH  +E SSH + Q R+ G+
Sbjct: 134 VGLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMVKAGCTHCFMEVSSHAVVQERIAGL 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                +FTN+  DH+D+H+T   Y NAK + F++ LP  + A+I ADD   K  M    N
Sbjct: 194 HFTGAAFTNISHDHLDFHETFANYINAKKQFFDQ-LPPTAFALINADD---KRGMVMLQN 249

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +        +F   K      + Q + + ++  D +  F + G F  YN L    + 
Sbjct: 250 TVAKTQRTFALKQFADFKARVVESSLQGLFMEID--DVEVWFQMIGYFNAYNLLGIYAIA 307

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--T 380
           + +G D+   L  L  L  VPGRFE +   S G    VDY+HT ++LE +L+ I  +  +
Sbjct: 308 VLLGEDTTETLTLLSGLQSVPGRFEKIIGES-GATGVVDYSHTPDALENVLQTIFELRQS 366

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---- 436
             +II V GCGG+RD  KRPIM +IA   +D+ I T DNPR+E P +I  ++  G+    
Sbjct: 367 GQKIITVVGCGGNRDASKRPIMAQIACQYSDVVIFTSDNPRNEPPMQILEDMQEGVSIDD 426

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            P      +R +AIR A E+  KQD+++VAGKGHET
Sbjct: 427 EPKTSLIASRKDAIRKACELAQKQDIILVAGKGHET 462


>gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga ochracea DSM 7271]
 gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea
           DSM 7271]
          Length = 486

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 256/493 (51%), Gaps = 51/493 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ I  V  DSR  + G +FVAI G + +GH +I QAI  GA AIV       +     
Sbjct: 19  EDKDITSVCFDSRKAEKGSMFVAITGTQSNGHEYIDQAIRSGATAIVC------EQLPQQ 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLS 143
                  +VV N+   L+L A+  YG   E ++   VTGT+GK+++A+ + Q+ +++G  
Sbjct: 73  PLPGVSYIVVPNSHSALALIAANFYGNPSEKLILVGVTGTNGKTTIATLLYQLFRKAGQK 132

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +   G  ST++ +  D       TTP P+ L   L  +  QGV +  +E SSHG+DQHR 
Sbjct: 133 A---GLLSTVAVYVDDQCFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQHRT 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +G++   G FTNL RDH+DYH+T  AY + K R F+  LP  + A++  DD         
Sbjct: 190 EGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPATAFALVNNDDK-------- 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGE 309
             N    + +   Q K   LK     H   +  I +E + FD L            L GE
Sbjct: 241 --NGAFMLQNTKAQKKTYALK----THADYKAYI-IESR-FDGLLLRINQHEVWTKLIGE 292

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F  YN L        + ID    L  +  +  V GRF++   ++ G    VDYAHT ++L
Sbjct: 293 FNAYNLLAVYATATLLSIDEIEALTLISAIEPVAGRFQY-AVSATGVITIVDYAHTPDAL 351

Query: 370 EMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           E +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D  I+T DNPR+E+PE 
Sbjct: 352 ENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVILTSDNPRNEEPET 411

Query: 428 IRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           I +E+  G+ P +  K     +R +AI++  +   K D++++AGKGHET   +  G +  
Sbjct: 412 ILSEMQQGVQPQYFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKGHETYQEI-KGVRHH 470

Query: 483 SVDCDIIREILGL 495
             D +I+RE L L
Sbjct: 471 FDDFEIVREYLEL 483


>gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
 gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
          Length = 479

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 258/486 (53%), Gaps = 43/486 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA        + IV+   
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVLVITDNKKNIVIDKV 68

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++D  A +     I                 Y K P++++AVTGT+GKSSV S++ Q 
Sbjct: 69  IYVKDVQAALYEAIEIF----------------YPKKPKDLIAVTGTNGKSSVVSYIAQT 112

Query: 137 CQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
               G  +  IG T  +  F   N       LTT   +   K    L+  G+ ++  EAS
Sbjct: 113 YSLLGKKAASIG-TIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEAS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D 
Sbjct: 172 SHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDI 231

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + V    HN   + ++VG +G  + + ++      Q +  +   ++++F  P+ G F
Sbjct: 232 EEIEFVKDYLHNHNIKFITVGTKGD-LEITRLNGSLKGQNINFTFNNREYNFNTPIIGSF 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q  N L+A      IG     V++ L ++  V GR E +   +    I+VDYAHT ++LE
Sbjct: 291 QASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALE 346

Query: 371 MILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ I
Sbjct: 347 KALTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLI 406

Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485
           RAEII GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+  G+KK+   D
Sbjct: 407 RAEIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDD 464

Query: 486 CDIIRE 491
            +++R+
Sbjct: 465 AEVVRK 470


>gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
 gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
          Length = 491

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 172/493 (34%), Positives = 256/493 (51%), Gaps = 49/493 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ ++++S+ ++ G +F AI G K DGH FI  AI  GA A+V+S     + +S     
Sbjct: 19  KVSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKY-P 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +   ++ DN RK  +  ++R Y  HP     ++ VTGT+GK++V + + Q  + +G ++ 
Sbjct: 78  DVTFVISDNIRKTQAEVSNRFY-DHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTG 136

Query: 146 QIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            IG          FA     TTP  I     LS +  +G  +V  E SSH +DQ+R+ G 
Sbjct: 137 IIGTIHYKYREKIFASGR--TTPDSIEWFYLLSEMRDRGADYVVAEVSSHAVDQYRVYGT 194

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA--DDAYSKEVMK-- 258
               G FTNL +DH+DYH+  + YF  K   F+ +       +I    DD Y + + +  
Sbjct: 195 VFHGGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDF 254

Query: 259 ----------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                     R  NA  RV         + +K V   +    +   V+         L G
Sbjct: 255 KSCMNTISYGRDKNAQFRVSDF-----VVDMKGVSFCYEYNGIKRRVKS-------DLKG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           EF +YN   A    +  G D   +    EKL  + GRFE V    +   +  DYAHT ++
Sbjct: 303 EFNIYNIAAAFSYLLRSGFDIDFLHHATEKLKPIRGRFETV---EKDFLVVNDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +E IL ++  I   RII+VFG GGDRD+GKRP+MGKIA +LADI I+T DNPRSEDP +I
Sbjct: 360 IEKILMSLNQIKKNRIIIVFGAGGDRDRGKRPLMGKIAEELADIIILTSDNPRSEDPSRI 419

Query: 429 RAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             +I  G+   +EK      +R EAI+ AIE+  K D++++AGKGHET  I+  G+K   
Sbjct: 420 IEDIKSGMK--MEKEIYEIIDREEAIKKAIEIARKDDIVLIAGKGHETYQII--GDKTYY 475

Query: 484 V-DCDIIREILGL 495
             D D+ ++ LG 
Sbjct: 476 FDDLDVAKKYLGF 488


>gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 1313]
          Length = 485

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 177/507 (34%), Positives = 271/507 (53%), Gaps = 44/507 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+DL+          L++  ++   + +I +++ DSR  +AG +FV I G K DGH F
Sbjct: 1   MKLKDLV--------KGLNVLEVEGDMDVEIKDIAYDSRKAKAGSLFVCIEGFKVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IPQAI  G  A +V     + D +  +R       V +TR  L+  A   +G HP +   
Sbjct: 53  IPQAIENGTRAFLVQKDVDVPDDATVVR-------VKDTRYALASVADIFFG-HPSSKFN 104

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + G +G     +    I  +S L +F  ++G   TI++      L    TTP    L + 
Sbjct: 105 LVGITGTKGKTTTTYMI--KSILEAFGQKVGLVGTIANMIGHEVLPTDRTTPESYDLQEL 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S +  + V  V +E SSH L+ HR+   +   G FTNL RDH+D+H+T + Y NAK++L
Sbjct: 163 FSEMVQKNVNSVVMEVSSHALELHRVSCCEYEIGVFTNLSRDHLDFHKTFENYLNAKIKL 222

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F          +I  D+ +  +V+  A    C V ++G   K   L+ V  +H+   V  
Sbjct: 223 FGMC----KKGLINIDNEFGPKVVDSAR---CEVYTMGIDNK-ADLRAVDIVHHPDSVDF 274

Query: 294 SVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +V    F  D    +PG+F VYNAL A G C  +G+    + + LEK+  VPGR E +  
Sbjct: 275 TVVSPWFTGDVRVNIPGKFSVYNALAAIGTCALMGVPFEYIKKGLEKV-TVPGRAEVLDI 333

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + +DYAH+ +SLE IL  ++    GR++ VFGCGGDRD+ KRPIMG+I+  LAD
Sbjct: 334 -KKDYTVMIDYAHSPDSLENILTTVKAYAPGRVVCVFGCGGDRDKTKRPIMGRISGQLAD 392

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             I+T DNPR+EDP+ I  +I  GI      +    +R EAI+ A+     +D++++AGK
Sbjct: 393 FTIITSDNPRTEDPDAIIRDIEEGIKQTGGLYTTITDRREAIKYALMNAKPKDIILLAGK 452

Query: 468 GHETVHIVTNGEKKMSVD-CDIIREIL 493
           GHET  I+   +K +  D  +++R+IL
Sbjct: 453 GHETYIILK--DKTIHFDEREVVRDIL 477


>gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 487

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/511 (32%), Positives = 270/511 (52%), Gaps = 49/511 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I K   +L+  +    +Q + E ++  ++ D+R +  G +F+ +     D H F  +AI
Sbjct: 1   MIGKKLVDLLAGVDYKVLQGKIEHEVKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
            QGA  +++            +     I+ VD++RK +S+ A   Y K  E   ++ VTG
Sbjct: 61  KQGATILMIEHEID------QVPEKVTIIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYLAKALS 175
           T+GK+S+  F+ Q+    G  +  IG   TI +  +  +L       TTP  I L  +L 
Sbjct: 115 TNGKTSITHFIAQVLSTLGEKTGVIG---TIRNTLEGEKLKTKKINPTTPDAIELQASLK 171

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  +G T+  +E +S  L Q+R+ G+    G FTNL +DH++ H T +AY  AK++LF+
Sbjct: 172 EMLDKGATYGVMEVTSSALAQNRVYGMAYQVGVFTNLTQDHLEEHGTMEAYGAAKLKLFK 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    I+  DD  ++++ +  H   C+V++ G   K        A    +Q+   +
Sbjct: 232 NC----RIGIVNQDDLMAEKIKQEGH---CKVITYGIDKK--------ADFKAEQIHQGL 276

Query: 296 EGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            G DF  +         FP+PG F VYNAL      +++G +   +LE L  ++ VPGRF
Sbjct: 277 TGVDFKLIYLGKQYSINFPVPGRFSVYNALATIATLVSLGYELTNILEALHWINEVPGRF 336

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           + +  N++G  + VDYAH+ +SL+ +L+  + + SG++ VVFGCGGDRD  KR  MG +A
Sbjct: 337 QII-PNTKGVLVVVDYAHSPDSLKQLLQTTKDLISGKLTVVFGCGGDRDTSKRAEMGTMA 395

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK-GNRIEAIRTAIEMLNKQDVL 462
              +D+ I+T DNPR+E PE+I A+I  GI    G  E   NR  AI  A+    + D +
Sbjct: 396 GAYSDLTIITSDNPRNEKPEQIMADIEKGILEVKGRYEMIKNRKLAIVAALAEAEEGDAV 455

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V+AGKGHET  ++ N +  +  DC+I+   L
Sbjct: 456 VIAGKGHETYQLIGNQKWHLD-DCEIVSNYL 485


>gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
 gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
          Length = 494

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 243/457 (53%), Gaps = 16/457 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++  DSR I+ G IFVAIVG+  DG  FI +A+AQGA+A++  ++           + 
Sbjct: 27  VEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHGLVEWLNA 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V      LS  A R+Y      ++ VTGT+GK+++   + Q     G  S  +G 
Sbjct: 87  VPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146

Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           T   + F  + ++   TT S I + + LS L+ +   + ++E SSHGL Q R+  +    
Sbjct: 147 TG--NGFLDNLKIAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEV 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL RDH+DYH T + Y  AK  LF +   K   A+I  DD   K  +    NA   
Sbjct: 205 GVFTNLSRDHLDYHGTMEEYALAKKSLFTQ--HKCKHAVINVDDEVGKAWVSDLSNAIAV 262

Query: 267 VLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            LS   GYQ + +    V       Q++            PL G+F   N LVA    ++
Sbjct: 263 SLSPLTGYQ-QSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFSTLLS 321

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GID  ++++   +L  V GR E   T ++  ++ VDYAHT ++LE  L  +R   SG++
Sbjct: 322 LGIDKQILVDTASQLQPVIGRMELFQTPNKA-KVVVDYAHTPDALEKALAALRVHCSGQL 380

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFI 440
             +FGCGGDRD GKRP+M   A   AD  I++DDNPRSEDP  I  +++ G+      F+
Sbjct: 381 WAIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPESAFV 440

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           E  +R +A++ A+E     D++++AGKGHE   ++ +
Sbjct: 441 EH-DRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKD 476


>gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 948

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 171/482 (35%), Positives = 247/482 (51%), Gaps = 12/482 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N L     +++  +   +S +S   +  +IF AI G K DG  FI  AI +GA  I+   
Sbjct: 5   NFLKNIKKEFKNHQFGGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVII--- 61

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S Q F   I++    L   N RK LS  + +     P+N++AVTGT+GKSS+A F  Q
Sbjct: 62  --SEQKFEG-IKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQ 118

Query: 136 ICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +          IG     T +S  + +  TT  PI L+K L+ L  Q + +V +EASSHG
Sbjct: 119 LLNLGNKKVASIGTLGVKTKNSLKKVSN-TTLDPIKLSKILNNLKKQKIDNVIMEASSHG 177

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L Q+RLDG+K     FTNL  DH+DYH+T   Y  +K+ LFE+LL      I  +     
Sbjct: 178 LKQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEY 237

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           K + + + N    + ++      I +       +KQ V I    K +     L G+ Q+ 
Sbjct: 238 KNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLQINLIGKIQLK 297

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N  +A        +    +++   K+  V GRFE +GT     ++ +DYAHT ++L+  L
Sbjct: 298 NLFMAMLAAKKSNLKFDQIVKLASKVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTCL 357

Query: 374 KNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            N++    + RI +VFGCGG+RD+ KRPIMGKIA    D   +TDDNPR E+P+KIR  I
Sbjct: 358 TNLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAI 417

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
              I      E  +R +AI  AI  L   D+LV+AGKGHE      N   K S   +I++
Sbjct: 418 KKTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEILK 477

Query: 491 EI 492
            I
Sbjct: 478 NI 479



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 154/366 (42%), Gaps = 37/366 (10%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ ++S  P      KI   S +S+ I+   IF AI GN +DG+L++ +A   GA  ++ 
Sbjct: 494 ILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIA 553

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++           + +   +VVD+T + L+  +S+L       I+++TG+ GK+S+   +
Sbjct: 554 NNQ----------KKSKKKIVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELL 603

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +    S +S+    P S       +N+   P  ++    L      G+  + ++    G
Sbjct: 604 GKTL--SKISNVTYSPKSF------NNKFGVPLSLF---NLKKNDEFGIFEIGMDKK--G 650

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +    IK   G  TN+   HI   +       AK  +    +      ++  DD + 
Sbjct: 651 EIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEIINN-IKTNGILVLNQDDRFY 709

Query: 254 KEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               K A      + +   + K   I+L+K+    +K ++ ++V  K   F   L  E  
Sbjct: 710 NLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKEKSKYKIFVNVNKKQIYFYVRLIFENN 769

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEK-----LHVVPGRFEFVGTNSRGGRIY-VDYAHT 365
           + N L+A    I+I  D+    + LEK       +  GR + +        IY VD ++ 
Sbjct: 770 LKN-LLATIAIISIFKDT----QKLEKNIFLDYEIAKGRGDIIKVKLNKKSIYIVDESYN 824

Query: 366 SNSLEM 371
           SN L +
Sbjct: 825 SNPLSL 830


>gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
 gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
          Length = 479

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 258/486 (53%), Gaps = 43/486 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA        + IV+   
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDKV 68

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++D  A +     I                 Y K P++++AVTGT+GKSSV S++ Q 
Sbjct: 69  IYVKDVQAALYEAIEIF----------------YPKKPKDLIAVTGTNGKSSVVSYIAQT 112

Query: 137 CQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
               G  +  IG T  +  F   N       LTT   +   K    L+  G+ ++  EAS
Sbjct: 113 YSLLGKKAASIG-TIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEAS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D 
Sbjct: 172 SHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDI 231

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + V    HN   + ++VG +G  + + ++      Q +  +   ++++F  P+ G F
Sbjct: 232 EEIEFVKDYLHNHNIKFITVGTKGD-LEIIRLNGSLKGQNINFTFNNREYNFNTPIIGSF 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q  N L+A      IG     V++ L ++  V GR E +   +    I+VDYAHT ++LE
Sbjct: 291 QASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALE 346

Query: 371 MILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ I
Sbjct: 347 KALTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLI 406

Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485
           RAEII GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+  G+KK+   D
Sbjct: 407 RAEIISGIGKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDD 464

Query: 486 CDIIRE 491
            +++R+
Sbjct: 465 AEVVRK 470


>gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 531

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 166/473 (35%), Positives = 248/473 (52%), Gaps = 44/473 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +SR ++   +F AI GN  DGH+F+  A+ +GA A+V           A IR       V
Sbjct: 36  NSRLVKPQGLFTAIKGNAVDGHIFVQDAVKKGAAAVVTEEPVEAPIGVAVIR-------V 88

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            ++R+ L+  AS  +G+  E +    +TGT+GK++V  F + +    G +  ++G   T+
Sbjct: 89  KDSRRALANMASEFFGRPTEKLKLAGITGTNGKTTVTYFAEAML---GAAGCKVGIVGTV 145

Query: 154 SS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           SS      +++ +TTP  + L + L+ +   GVTH  +E SSH L Q R    +  AG F
Sbjct: 146 SSRWPGHEKESSVTTPESLELQETLARMVDAGVTHAIIEVSSHALTQSRPAFCQFDAGVF 205

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP----AIIYADDAYSKEVMKRAHNAGC 265
           TN+ +DH+DYH+  ++YF AK  LF++LL   +     A+I  DD     + +       
Sbjct: 206 TNITQDHLDYHKDMESYFQAKRILFDDLLAASTKENKTAVINLDDPQGAVLCREVKTP-- 263

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            VL  G  +G  I    V A  +  +  +     +  F  P  G   +YN + AAG+ +A
Sbjct: 264 -VLCTGLTEGSSIRSIDVKAGADGLKGVMETPAGELVFESPAVGRHNLYNLMSAAGVGLA 322

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+    V   L     VPGR E V  N     ++VDYAHT ++LE +L+ +R ++  +I
Sbjct: 323 FGLSLEEVEMGLNAAVNVPGRLEKV-ENGLDRHVFVDYAHTPDALENVLEALRRVSKAKI 381

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------ 438
           I VFGCGGDRD+GKRP MG  A   +D+ +VT DNPRSEDPE I  +I+ GI G      
Sbjct: 382 ITVFGCGGDRDKGKRPKMGAAAARHSDLVVVTSDNPRSEDPEAIIDDILPGISGEGAQRL 441

Query: 439 -------------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
                        F+ + +R +AI TAI      D++++AGKGHET  IV NG
Sbjct: 442 NASYCMMCSRKSAFMVEPDRRKAILTAIMSSGPGDLVLIAGKGHETYQIVKNG 494


>gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
 gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
          Length = 484

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 258/497 (51%), Gaps = 43/497 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA----- 68
           +IN        +++  +  +S +S+ ++   +F  I G   DG+ FI  A+++GA     
Sbjct: 3   IINMSHNLKQLFQQHNVKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDALSKGAVLVIT 62

Query: 69  ---EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
              + IV+     ++D  A +     I                 Y K P+N++AVTGT+G
Sbjct: 63  DNKKNIVIDKVIYVKDVQAALYEAIEIF----------------YPKTPKNLIAVTGTNG 106

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSS 179
           KSSV S++ Q     G  +  IG T  +  F  DN       LTT   +   K    L+ 
Sbjct: 107 KSSVVSYIAQTYSLLGKKAASIG-TIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAE 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+ ++  EASSHGLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L 
Sbjct: 166 NGIEYLVFEASSHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLL 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               AI+ +D    + V    HN   + ++VG +G  + + ++      Q +  +   ++
Sbjct: 226 PNGIAILNSDIEEIEFVKDYLHNHNIKFITVGKKGD-LEITRINGSLKGQNINFTFNNRE 284

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++F  P+ G FQ  N L+A       G     V++ L ++  V GR E +        I+
Sbjct: 285 YNFNTPIIGSFQASNLLIAVLSIHYTGFAFDDVIDSLVEVKAVKGRMERIDNT----HIF 340

Query: 360 VDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L   L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TD
Sbjct: 341 VDYAHTPDALAKALTELKNIKLRGSKLSVVFGCGGNRDKAKRSLMGQIAAKHADTIIITD 400

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPR+EDP+ IRAEII GI    + E  NR EAI+  I  L + D L+VAGKGHE   I+
Sbjct: 401 DNPRNEDPKLIRAEIISGIEKADYTEIANREEAIKYGINNLKQDDTLLVAGKGHENYQII 460

Query: 476 TNGEKKMSV-DCDIIRE 491
             G+KK+   D +++R+
Sbjct: 461 --GDKKLPFDDAEVVRK 475


>gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
 gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
          Length = 485

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 250/475 (52%), Gaps = 42/475 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK N +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS           +
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSK-------EVEM 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI-----CQ 138
           + N   ++++  R  L   AS  Y + P+    I+ VTGT+GK+S    ++++       
Sbjct: 71  KHNVSYVLIEEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVT 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G   +++G       F   N  TTP  + L K       + + +V +E SSH L+  R
Sbjct: 130 RIGTIEYKVGD----EVFDAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGR 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +D I      FTNL +DH+DYH T + YF AK +LF +L  K + ++I  DD Y K +  
Sbjct: 184 VDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDK-NDSVINIDDNYGKRLYD 242

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                   ++S G  G  +  + +      I  K+QV            F L G+F +YN
Sbjct: 243 EFIVDNPEIISYGIDGGDLEGEYLDDGYIDIKYKEQVE--------KVKFALLGDFNLYN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++ 
Sbjct: 295 TLGAIGIALKIGISMEEILKRVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIV 353

Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++ 
Sbjct: 354 AARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVK 413

Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G      +I + +R +AI+ A+ M  K D++++ GKGHET HI+  G KK   D
Sbjct: 414 KGFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia canadensis str. McKiel]
 gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel]
          Length = 478

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 262/475 (55%), Gaps = 34/475 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  I  +S++S++I+ G +F A+ G   DG+ FI  A+ +GA  ++  +         
Sbjct: 9   FQQHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNKGAVLVITDN--------- 59

Query: 85  TIRSNTPI---LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               NT I   + V++ +K L       Y K P++++AVTGT+GKSSV S++ Q+    G
Sbjct: 60  --EKNTAINKVIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVISYIAQLYSLLG 117

Query: 142 LSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             +  IG T  +  F  DN       LTT   +   K    L+  G+ +++ EASSHGLD
Sbjct: 118 EKAASIG-TIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYLAFEASSHGLD 176

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q RL   K+    FT+   DH+DYH T++ Y  AK++LF   L   + +I+ +D    + 
Sbjct: 177 QTRLGENKVNIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAISILNSDIEEIEF 236

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +    +    + ++VG +G  + + ++ +    Q +  +   + + F  P+ G FQ  N 
Sbjct: 237 IKAYLNKHNIKFITVGIKGD-LQITRINSSLKGQNIDFTFNNRKYSFNTPIIGSFQASNL 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE---MI 372
           L+AA      G+    V+  L  +  V GR + +        I+VDY+HT ++LE   + 
Sbjct: 296 LIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQI----ENTNIFVDYSHTPDALEKALLE 351

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LKNI+ + S ++ V+FGCGG+RD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEI
Sbjct: 352 LKNIQVLGS-KLNVIFGCGGNRDKKKRSLMGQIAAKLADNVIITDDNPRLEDPKLIRAEI 410

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I GI    +IE  NR +AI+  I  LN+ D+L++AGKGHE   I+  G KK+  D
Sbjct: 411 ISGIDKANYIEIENREKAIKYGINNLNQDDILLIAGKGHENYQII--GNKKIPFD 463


>gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 504

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 169/470 (35%), Positives = 249/470 (52%), Gaps = 36/470 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR IQAG +FVA+ G + DG+ FIP+A+  GA A V++      +  AT+   
Sbjct: 25  VTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPEAVRSGASA-VITETVGFSECPATV--- 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + V ++RK ++  A+  YG HP     ++ VTGT+GK++    ++ I +R G S   
Sbjct: 81  ---VRVSDSRKAMARMAANYYG-HPCAGLKMIGVTGTNGKTTTTLLLESILKRGGHS--- 133

Query: 147 IGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   T+     + ++   +TTP  + L      +   GVTHV +E SSH L Q R+   
Sbjct: 134 VGVLGTLFYRWGAKSKTAGMTTPESLDLQGLFYEMREDGVTHVVMEVSSHALAQGRVAEC 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  FTNL +DH+DYH T + YF AK  LF E L   S A+I  DD Y   ++++A  
Sbjct: 194 AFDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLRTGSVAVINGDDPYGARLVEKA-G 252

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G    S G +    H+K      +  +  +       D   PL G   +YN L A    
Sbjct: 253 PGAWSYSTGSEAARAHVKSARLTASGIEARLCGPDGSMDIHSPLIGRLNLYNILAAVTAS 312

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+  A + E +  L  V GR + V +   G  + VDYAHT +++E  L  +R +T+G
Sbjct: 313 LAMGVPEAAIREGVAGLTSVDGRLQRVASPGTGFEVVVDYAHTPDAMEKSLGCLREMTAG 372

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-------------- 428
           R++VVFGCGGDRD+GKRP+MGK+A  L D+ IVT DNPRSE PE+I              
Sbjct: 373 RLLVVFGCGGDRDRGKRPLMGKVAGALGDLVIVTSDNPRSEVPERIIDEIEPGVRASGLE 432

Query: 429 ---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
               AE  +G  G+I + +R  AI  A+      D + + GKGHET  +V
Sbjct: 433 RILAAEPGNGARGYIVEVDRKSAIEKALAWARPGDTVFIGGKGHETYQLV 482


>gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
          Length = 463

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 263/476 (55%), Gaps = 27/476 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ +S+ ++ G+IFVAI G++ DGH F+ +A+++GA+ ++V     + D        
Sbjct: 7   VKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKDVGITD-------- 58

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             I+ V +TR+ L    S  YGK  +   ++ +TGT+GK++    V+ +    G+ +  +
Sbjct: 59  NRIVKVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGLV 118

Query: 148 GPT--STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           G      +    +    TTP P      L  +   G   +  E SSH LDQ R+      
Sbjct: 119 GTIYYRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWATHFH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL  DH+DYH++ + YF AK+RLF+E   +   A++ +DD Y K +++       
Sbjct: 179 IVGFTNLSHDHLDYHKSMEEYFKAKLRLFKEYTYE--YAVVNSDDEYGKRIVRELKG--- 233

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R ++ G +G F  L          ++ ++ EGK + F   L G+FQ YN  +    C+ +
Sbjct: 234 RAITYGREGDFKILDFDTGFEG-SKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCMLV 292

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI+   + E L+K++V PGRFE       G  + VDYAHT ++LE +LK+IR +++GR+I
Sbjct: 293 GIEVQAIEEGLKKVYV-PGRFETY--RGDGFLVIVDYAHTPDALENVLKSIRRLSTGRVI 349

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIE 441
            +FG GG+RD+ KRPIMG +A   +D+ ++T DNPR EDP  I  +I+ G+       +E
Sbjct: 350 TLFGAGGNRDRTKRPIMGSVAEKWSDLLVITSDNPRDEDPMDIIRDILQGVKDTSKVLVE 409

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           + +R +AI+ AI +  + D +++AGKGHE    +  G K    D D+++E+L + L
Sbjct: 410 E-DRKKAIKMAISLAEEGDTVLIAGKGHEDYQEI-KGVKYPFKDSDVVKEVLSVRL 463


>gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
          Length = 485

 Score =  256 bits (654), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 250/475 (52%), Gaps = 42/475 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK N +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS           +
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSK-------EVEM 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI-----CQ 138
           + N   ++++  R  L   AS  Y + P+    I+ VTGT+GK+S    ++++       
Sbjct: 71  KHNVSYVLIEEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVT 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G   +++G       F   N  TTP  + L K       + + +V +E SSH L+  R
Sbjct: 130 RIGTIEYKVGD----EVFDAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGR 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +D I      FTNL +DH+DYH T + YF AK +LF +L  K + ++I  DD Y K +  
Sbjct: 184 VDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDK-NDSVINIDDNYGKRLYD 242

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                   ++S G  G  +  + +      I  K+QV            F L G+F +YN
Sbjct: 243 EFIVDNPEIISYGIDGGDLEGEYLDDGYIDIKYKEQVE--------KVKFALLGDFNLYN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++ 
Sbjct: 295 TLGAIGIALKIGISMEEILKRVSNIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIV 353

Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++ 
Sbjct: 354 AARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVK 413

Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G      +I + +R +AI+ A+ M  K D++++ GKGHET HI+  G KK   D
Sbjct: 414 KGFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
 gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
          Length = 485

 Score =  256 bits (654), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 160/472 (33%), Positives = 253/472 (53%), Gaps = 30/472 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++S DSR ++   +F+ I GN  DGH +I  AI +GA AI++    S +     IR  
Sbjct: 23  IEDISYDSRKVKQNSMFLCIRGNTVDGHNYIDDAIQKGAIAILIDKKISYKKGITYIR-- 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI----CQRSGLS 143
                V+N ++ +++     +    +  N++ VTGT+GK+S  SF++QI    C+   + 
Sbjct: 81  -----VNNVKESMAIIGKNFFQNPCQKINLIGVTGTNGKTSTVSFIKQILGYDCKVGSIG 135

Query: 144 SFQI-GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +I     TI+S       TTP  + + K L+ +      +  +E SSH L  +R+D I
Sbjct: 136 TIEIYDGKKTITSIN-----TTPESLDIQKNLNEMIKNNCKYCVMEVSSHALVLNRIDNI 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  FTNL +DH+D+H+T + Y NAK +LF      +S  I   DD   +E   ++ N
Sbjct: 191 DYEAAVFTNLTQDHLDFHKTLENYKNAKEKLF---YKTKSINIFNIDDKVGEEFFNKSLN 247

Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              +  + G + +       +    ++ +  + ++ + +    P+ G F VYN L A   
Sbjct: 248 RDIKTYTYGVEKEADFKAANIKLYDDRTEYDLIIDKQKYKVSTPILGNFNVYNTLAAITT 307

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           CI +G+    V++ ++ L  V GR + V  N +   I VDYAHT ++L  ILK+ R  T 
Sbjct: 308 CILLGLSREDVIKRVQNLKSVSGRLDKV-ENDKNVNIIVDYAHTPDALLNILKSARLFTK 366

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            RII+VFGCGG+RD+ KRPIMGKIA   ADI+I+T DNPR E    I  +I+ GI   ++
Sbjct: 367 NRIILVFGCGGNRDKAKRPIMGKIAQQNADISIITSDNPRFEKEMDIIEDILCGIDKTLD 426

Query: 442 K----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                 +R ++I+ AIE+    D++++AGKGHE   I   G+KK   D  +I
Sbjct: 427 NYFVVQDREDSIKKAIELYEVGDLIIIAGKGHENYQI--KGDKKYFFDDKLI 476


>gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 493

 Score =  256 bits (654), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 255/475 (53%), Gaps = 17/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA+VG+  DG  FI  AI +GA A++  +       +  I  +
Sbjct: 25  VSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A +LY      ++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  IPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMGT 144

Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           T   + F  D +    TT + + +   L+ L+ Q   + ++E SSHGL Q R+  +   A
Sbjct: 145 TG--NGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSLSFAA 202

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL RDH+DYH T + Y NAK+ LF +   +   AII  DD       K+  NA   
Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ--HQCDQAIINVDDEVGAAWAKQLTNA--I 258

Query: 267 VLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
            +S+    +F H L      + +  +TI  +G+  +     PL GEF   N ++A    +
Sbjct: 259 AVSLAPTTEFKHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G D + +L    +L  V GR E     +R  ++ VDYAHT ++LE  L+ +R    G+
Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQAENRA-KVVVDYAHTPDALEKALQALRVHCDGQ 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I  +++ G+    E  
Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVFIVKDMLAGLSKPAEAI 437

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            + +R +A+  A+E    QD++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 438 VQHDRFKALSYALENAAPQDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
 gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
          Length = 486

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 160/474 (33%), Positives = 244/474 (51%), Gaps = 30/474 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +F+ I G   DGH +I  A  +GA   ++      ++    ++     
Sbjct: 26  VEYDSRKVEEGTLFICIKGFVSDGHRYIDSAYEKGARVFLIQDDVDFKEDCTYVK----- 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             V++TRK ++  A+  + +HP +   ++ VTGT+GK+S+ +F+ +I +     + ++G 
Sbjct: 81  --VEDTRKTMAKVAAN-FCEHPADKFDVIGVTGTNGKTSITTFINEILRNC---NKKVGL 134

Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             TI  F  DN +    TTP  + L K    +   G    ++E SSH L+  R+D     
Sbjct: 135 IGTIKIFDGDNEVPSNSTTPESVDLQKIFKRMVDNGCDCCAMEVSSHSLELSRVDDTNFK 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNA 263
            G FTNL  DH+D+H+T + Y  AK +LF +        II  DD   +++ +  +  + 
Sbjct: 195 IGIFTNLTPDHLDFHKTLENYRKAKEKLFHKTT---QANIINVDDEGGRKIYEAIKGLDT 251

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            C    + +   F   K + +  +    T+       D   P+PG+F VYN L     C 
Sbjct: 252 PCYTYGIEHDADFT-AKNIKSDASGVAYTLVTPNHTEDIFIPVPGKFTVYNTLAVIAACE 310

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID    L  L     V GRFE V  N +G  + VDYAHT ++LE +L   R    G 
Sbjct: 311 MLGIDKEDYLNSLRNTGGVAGRFETV-PNDKGISVIVDYAHTPDALENVLNTAREFVEGD 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK- 442
           +I VFGCGGDRD  KRP+MG I   L+D  I+T+DNPR+EDPE I  +I+ G+    E  
Sbjct: 370 LIAVFGCGGDRDSEKRPLMGGIGQRLSDRCIITNDNPRTEDPELIIKDILAGLDESNENY 429

Query: 443 ---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +R EAI+ AIE   K DV+++AGKGHE   I+   +     D ++ RE+L
Sbjct: 430 KVVMDRKEAIKEAIESAKKGDVILIAGKGHENYQILGTVKHHFD-DKEVAREVL 482


>gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halanaerobium praevalens DSM 2228]
          Length = 486

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 251/468 (53%), Gaps = 23/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I+E+  DSR I+ G +F+AI G K DGH +I QAI  GA AI++     + +   T 
Sbjct: 20  KKEISEIKYDSRAIKTGNLFIAISGFKIDGHQYISQAIENGATAIIIEKELEVYEKDITY 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                 L V+N+R+ +S+ A   +    + I  + +TGT+GK++ A  + +I Q+    +
Sbjct: 80  ------LKVENSRQVMSILAKNFFDNPLKEIKLIGITGTNGKTTTAYLLYKILQKYAGQA 133

Query: 145 FQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              G  S I  S     NR TTP  + L +  + +  +G+ +  +E SSH LD +R++ I
Sbjct: 134 ALFGTISNIIGSETLSSNR-TTPESLDLYRYFAQMKKKGIKYGVMEVSSHALDLYRVESI 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  FTNL  +H+DYHQ+   Y   K RLF +L P +  AII ADD  S+ + K++  
Sbjct: 193 DFEAAIFTNLSPEHLDYHQSLDNYREVKSRLFSQLKPNKY-AIINADDPNSEYIKKKSE- 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
              + LS     K   L        +  +     GK   +F   L G F +YN+L     
Sbjct: 251 --AQNLSYSLDTKSADLYTTEFKLKQTGLEYKTGGKLVANFKLNLGGLFNIYNSLAVVLT 308

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +GI+  ++ + L     VPGRFE +    +  ++ VDYAHT +++E ILK    I  
Sbjct: 309 ALVLGIEKNIIKKALADFDSVPGRFEIIDQGQKF-QLIVDYAHTPDAMENILKAALNIKK 367

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            ++I++FGCGGDRD+ KRP+M  +A   AD  I+++DNPRSE P KI  EI  G      
Sbjct: 368 NKLIILFGCGGDRDRSKRPLMAALAEKYADSIIISNDNPRSESPTKIFKEIEKGFSSNFT 427

Query: 442 K----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                 +R + I+ AIE+  K D++++ G+GHE   ++   E+K+ +D
Sbjct: 428 NYSIIPDRKKGIKAAIELAKKDDLVLLLGRGHEKYQVIK--ERKIELD 473


>gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
 gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
          Length = 499

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 173/480 (36%), Positives = 266/480 (55%), Gaps = 36/480 (7%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           ELI  ++  P++ R   +++I+ +  DSR +    +F+ I G   DGH +I +AI +GA 
Sbjct: 5   ELIKDIT--PVETRGDLDKEIDNIVYDSRQVTDNSLFICIEGFNTDGHKYIDKAIKKGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V+     L+ +S  I      + V+++R+ +   AS  Y    +N+  + VTGT+GK+
Sbjct: 63  AVVIEK--DLEVYSEDI----TYIRVNDSRETMGYLASTFYNYPLKNLSLIGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           +    ++ I + +G   F  G   TI +   D  L    TTP  + L +  + +   GVT
Sbjct: 117 TTTYLIKAILEEAG---FNTGLVGTIKNIIGDETLPATRTTPESLDLYRLFARMVDSGVT 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H  +E SSH LD  R++G++   G FTN+ +DH+DYH++   Y  AK RLF +L P    
Sbjct: 174 HAVMEVSSHALDLKRVEGMEFKIGVFTNISQDHLDYHKSLDEYLKAKSRLFRQLEPG-GW 232

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDF 302
           A++  DD++S +++K        +++ G +G    LK      +   V+  V GK+ F  
Sbjct: 233 AVVNIDDSHSDKIIKSTTG---NIITYGIEGD-CDLKANEINLSPTGVSYHVSGKESFKI 288

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F VYN+L A      +GI+   +   +EK+  V GRFE V    +   + VDY
Sbjct: 289 DLNLTGLFNVYNSLAAISCGHVLGINGETIKAGIEKVQGVAGRFELV-NEGQDFAVVVDY 347

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + +E +L+  R    G IIVVFGCGGDRD+GKRP+MGKIA  L D  I+T DNPRS
Sbjct: 348 AHTPDGMENVLETAREFVKGNIIVVFGCGGDRDKGKRPLMGKIATQLGDYCIITSDNPRS 407

Query: 423 EDP-------EK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           EDP       EK I+ E+I   P ++++ +R +AI +AI    K D++++ GKGHET  I
Sbjct: 408 EDPMEIIKDIEKGIQEEVISDTP-YVKEPDRRKAIFSAINSARKDDMVIIFGKGHETYQI 466


>gi|218661064|ref|ZP_03516994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli IE4771]
          Length = 278

 Score =  256 bits (653), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 130/251 (51%), Positives = 171/251 (68%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T +AY  AKMRLF+ LLPK +PA+I+ADD +S + +K A +AG  V +VG +G ++ L
Sbjct: 1   HPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTL 60

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K+V    +KQ   I +  + F+   PL G+FQV NALVAAGL ++ G++  + +  LEKL
Sbjct: 61  KRVEHFRHKQMAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMTALEKL 120

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR E VG    G   YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKR
Sbjct: 121 VGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKR 180

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           PIMG+IA  LAD+ IVTDDNPRSE+P  IRAEI+   P   E  +R  AIR A+ ML   
Sbjct: 181 PIMGEIACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCASEIADRAIAIREAVAMLTSG 240

Query: 460 DVLVVAGKGHE 470
           D L+VAGKGHE
Sbjct: 241 DTLIVAGKGHE 251


>gi|71082737|ref|YP_265456.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 948

 Score =  256 bits (653), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 247/482 (51%), Gaps = 12/482 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N L     +++  +   +S +S   +  +IF AI G K DG  FI  AI +GA  I+   
Sbjct: 5   NFLKNIKKEFKNHQFAGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVII--- 61

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S Q F   I++    L   N RK LS  + +     P+N++AVTGT+GKSS+A F  Q
Sbjct: 62  --SEQKFEG-IKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQ 118

Query: 136 ICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +          IG     T +S  + +  TT  PI L+K L+ L  Q + +V +EASSHG
Sbjct: 119 LLNLGNKKVASIGTLGVKTKNSLKKVSN-TTLDPIKLSKILNDLKKQKIDNVIMEASSHG 177

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L Q+RLDG+K     FTNL  DH+DYH+T   Y  +K+ LFE+LL      I  +     
Sbjct: 178 LKQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEY 237

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           K + + + N    + ++      I +       +KQ V I    K +     L G+ Q+ 
Sbjct: 238 KNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLKINLIGKIQLK 297

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N  +A        +    +++   ++  V GRFE +GT     ++ +DYAHT ++L+  L
Sbjct: 298 NLFMAMLAAKKSNLKFDQIVKLASRVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTCL 357

Query: 374 KNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            N++    + RI +VFGCGG+RD+ KRPIMGKIA    D   +TDDNPR E+P+KIR  I
Sbjct: 358 TNLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAI 417

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
              I      E  +R +AI  AI  L   D+LV+AGKGHE      N   K S   +I++
Sbjct: 418 KKTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEILK 477

Query: 491 EI 492
            I
Sbjct: 478 NI 479



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 155/366 (42%), Gaps = 37/366 (10%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ ++S  P      KI   S +S+ I+   IF AI GN +DG+L++ +A   GA  ++ 
Sbjct: 494 ILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIA 553

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++           + +   +VVD+T + L+  +S+L       I+++TG+ GK+S+   +
Sbjct: 554 NNQ----------KKSKKKIVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELL 603

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +    S +S+    P S       +N+   P  ++    L      G+  + ++    G
Sbjct: 604 GKTL--SKISNVTYSPKSF------NNKFGVPLSLF---NLKKNDEFGIFEIGMDKK--G 650

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +    IK   G  TN+   HI   +       AK  +    +      ++  DD + 
Sbjct: 651 EIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEIINN-IKTNGILVLNQDDRFY 709

Query: 254 KEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               K A      + +   + K   I+L+K+    +K ++ ++V  K   F   L  E  
Sbjct: 710 NLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKERSKYKIFVNVNKKQIYFYVRLIFENN 769

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEK-----LHVVPGRFEFVGTNSRGGRIY-VDYAHT 365
           + N L+A    I+I  D+    + LEK       +  GR + +    +   IY VD ++ 
Sbjct: 770 LKN-LLATIAIISIFKDT----QKLEKNIFLDYEMTKGRGDIIKVKLKKKSIYIVDESYN 824

Query: 366 SNSLEM 371
           SN L +
Sbjct: 825 SNPLSL 830


>gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
          Length = 498

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 175/505 (34%), Positives = 259/505 (51%), Gaps = 61/505 (12%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  EL+N  S   +    ++ I ++++DSR ++ G +F+ + G   DGH ++ +A+ +G
Sbjct: 2   KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124
           A AI+     S+ +          ++ V NTR  +   A  L+  +P     ++AVTGT+
Sbjct: 62  AVAIIAEKKISVPE-------GVTVVYVKNTRTVMEKIAP-LFFDYPSKSMRMIAVTGTN 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQ 180
           GK++    +  I +++G   ++ G   TI +   D       TTP  I L + L  +   
Sbjct: 114 GKTTTTHIISHILKKAG---YKTGVIGTIHALIGDEEFETHNTTPDVIDLQRLLYKMKKA 170

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-----E 235
            VTHV +E SSH L   R++G +     F+NL  DH+D+H+T   Y NAK +LF     E
Sbjct: 171 KVTHVCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEE 230

Query: 236 ELLPKESPAIIYADDAYSKEVMKRA---------------HNAGCRVLSVGYQGKFIHLK 280
             +     A I  DD YS  +M  A                +A  +V+S  + GK  + K
Sbjct: 231 GQVKSNKNACINIDDDYS-HIMIDAIKDRKLCKLHTSSMNRDAELKVISTEFTGK--NTK 287

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +C   NK+          +     L G F VYN + A    I+ GID   +++ L    
Sbjct: 288 FICVYKNKE----------YPVTVKLMGRFNVYNIMAAMSAAISEGIDFNFIIKALTDFT 337

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGRFE +        + VDYAHT + LE IL   R IT+G+IIVVFGCGGDRD  KRP
Sbjct: 338 NVPGRFELIDEGQEFS-VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRP 396

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTA 452
           IMG+IA   +DIAIVT DNPR+EDP  I  +++ G+    EK N        R  AI+ A
Sbjct: 397 IMGRIAAKYSDIAIVTSDNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEA 456

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTN 477
           IE+    D++++AGKGHE   I+ N
Sbjct: 457 IEIARVNDIVIIAGKGHEDYQILKN 481


>gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
          Length = 479

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 166/485 (34%), Positives = 256/485 (52%), Gaps = 41/485 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA        + IV+   
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDKV 68

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++D  A +     I                 Y K P++++AVTGT+GKSSV S++ Q 
Sbjct: 69  IYVKDVQAALYEAIEIF----------------YPKKPKDLIAVTGTNGKSSVVSYIAQT 112

Query: 137 CQRSGLSSFQIGPTST----ISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               G  +  IG          +F  D   LTT   +   K    L+  G+ ++  EASS
Sbjct: 113 YSLLGKKAASIGTIGVEIFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASS 172

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D  
Sbjct: 173 HGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIE 232

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + V    HN   + ++VG +G  + + ++      Q +  +   ++++F  P+ G FQ
Sbjct: 233 EIEFVKDYLHNHNIKFITVGTKGD-LEITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQ 291

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A      IG     V++ L ++  V GR E +   +    I+VDYAHT ++LE 
Sbjct: 292 ASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALEK 347

Query: 372 ILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IR
Sbjct: 348 ALTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIR 407

Query: 430 AEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DC 486
           A II GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+  G+KK+   D 
Sbjct: 408 AAIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDDA 465

Query: 487 DIIRE 491
           +++R+
Sbjct: 466 EVVRK 470


>gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
 gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
          Length = 477

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 173/479 (36%), Positives = 246/479 (51%), Gaps = 26/479 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + ++SDSR + AG +FVA  G+  DG  +IPQAIA GA A++    +  + FS     
Sbjct: 13  RPSSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVL----WEAEGFSWPADL 68

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSF 145
               L V + RK     A   YG HP + L    VTGT+GK+S   ++        L+S 
Sbjct: 69  QAVNLPVKDLRKQAGEIADEFYG-HPSSALWMVGVTGTNGKTSCTQWLTHC-----LNSL 122

Query: 146 QIGPTSTISSFAQD--NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           Q   T+ I +        L     TTP PI L   L+    QG    ++E SSHGLDQ R
Sbjct: 123 QR-KTAVIGTLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGR 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++G+      FTNL RDH+DYH    +Y  AK RL E   P    A++ A+DAY    ++
Sbjct: 182 VNGVHFDIAVFTNLTRDHLDYHGDMDSYAAAKRRLME--WPGLKLAVLNAEDAYGLTFLQ 239

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              + G  VLS G Q   +H   +       Q++++    D      + G F  YN L  
Sbjct: 240 ALRSEGRPVLSYGMQSGDVHCTSLHLHETGMQLSVTTPWGDVTLHAAVMGRFNAYNLLAV 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +A+ +      + +  L  VPGR E  G N+    + +DYAHT ++LE  L+ +R 
Sbjct: 300 LATLLAMDVPLEAAAQAIATLKPVPGRMEQYGGNAMP-VVVIDYAHTPDALENALQALRE 358

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            T G++  VFGCGGDRD GKRP+MG IA  LAD  +VT DNPRSE+P+ I A+I   +  
Sbjct: 359 QTRGKLWCVFGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGR 418

Query: 439 FIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             +   +R  AI  AIE     D+++VAGKGHET   +  G +    D D++  +LG +
Sbjct: 419 NHQIMVDRRAAIAHAIEQAAPGDIVLVAGKGHETYQEI-KGVRHPYSDVDVVTTLLGAV 476


>gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
 gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
          Length = 477

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 174/479 (36%), Positives = 246/479 (51%), Gaps = 26/479 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + ++SDSR + AG +FVA  G+  DG  +IPQAIA GA A++    +  + FS     
Sbjct: 13  RPSSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVL----WEAEGFSWPTDL 68

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSF 145
               L V + RK     A   YG HP   L    VTGT+GK+S   ++   C    L+S 
Sbjct: 69  QAVNLPVKDLRKQAGEIADEFYG-HPSRALWMVGVTGTNGKTSCTQWLTH-C----LNSL 122

Query: 146 QIGPTSTISSFAQD--NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           Q   T+ I +        L     TTP PI L   L+    QG    ++E SSHGLDQ R
Sbjct: 123 QR-KTAVIGTLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGR 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++G+      FTNL RDH+DYH    +Y  AK RL E   P    A++ A+DAY    ++
Sbjct: 182 VNGVHFDVAVFTNLTRDHLDYHGDMDSYAAAKRRLME--WPGLKLAVLNAEDAYGLTFLQ 239

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              + G  VLS G Q   +H   +       Q++++    D      + G F  YN L  
Sbjct: 240 ALRSEGRPVLSYGMQSGDVHSTSLHLHETGMQMSVTTPWGDVTLQASVMGRFNAYNLLAV 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +A+ +      + +  L  VPGR E  G N+    + +DYAHT ++LE  L+ +R 
Sbjct: 300 LATLLAMDVPLEAAAQAIATLKPVPGRMEQYGGNAMP-VVVIDYAHTPDALENALQALRE 358

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            T G++  VFGCGGDRD GKRP+MG IA  LAD  +VT DNPRSE+P+ I A+I   +  
Sbjct: 359 QTRGKLWCVFGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGR 418

Query: 439 FIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             +   +R  AI  AIE     D+++VAGKGHET   +  G +    D D++  +LG +
Sbjct: 419 NHQIMVDRRAAIAHAIEQAAPGDIVLVAGKGHETYQEI-KGVRHPYSDVDVVTTLLGAV 476


>gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 10329]
          Length = 493

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 255/475 (53%), Gaps = 17/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA+VG+  DG  FI  AI +GA A++  +       +  I  +
Sbjct: 25  VSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A +LY      ++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  IPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMGT 144

Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           T   + F  D +    TT + + +   L+ L+ Q   + ++E SSHGL Q R+  +   A
Sbjct: 145 TG--NGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSLSFAA 202

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL RDH+DYH T + Y NAK+ LF +   +   AII  DD       K+  NA   
Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ--HQCDQAIINVDDEVGAAWAKQLTNA--I 258

Query: 267 VLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
            +S+    +F H L      + +  +TI  +G+  +     PL GEF   N ++A    +
Sbjct: 259 AVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G D + +L    +L  V GR E     +R  ++ VDYAHT ++LE  L+ +R    G+
Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQAENRA-KVVVDYAHTPDALEKALQALRVHCDGQ 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I  +++ G+    E  
Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKDMLAGLSKPAEAI 437

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            + +R +A+  A+E    QD++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 438 VQHDRFKALFYALENAAPQDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 493

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 255/475 (53%), Gaps = 17/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA+VG+  DG  FI  AI +GA A++  +       +  I  +
Sbjct: 25  VSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A +LY      ++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  IPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMGT 144

Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           T   + F  D +    TT + + +   L+ L+ Q   + ++E SSHGL Q R+  +   A
Sbjct: 145 TG--NGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSLSFAA 202

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL RDH+DYH T + Y NAK+ LF +   + + AII  DD       K+  NA   
Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ--HQCAQAIINVDDEVGAAWAKQLTNA--I 258

Query: 267 VLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
            +S+    +F H L      + +  +TI  +G+  +     PL GEF   N ++A    +
Sbjct: 259 AVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G D + +L    +L  V GR E      R  ++ VDYAHT ++LE  L+ +R    G+
Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQAEHRA-KVVVDYAHTPDALEKALQALRVHCDGQ 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I  +++ G+    E  
Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKDMLAGLSKPAEAI 437

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            + +R +A+  A+E    QD++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 438 VQHDRFKALFYALENAAPQDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 484

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 170/480 (35%), Positives = 259/480 (53%), Gaps = 40/480 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR+ + G +FVAI G K DG  +I  AI +GA A++V       D   +I  +
Sbjct: 23  IRGICYDSRNSKDGSMFVAIKGFKSDGADYIGDAIERGAVAVLV-------DGEISIDKD 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++ V NTRK L+  AS  YG   + +  + VTGT+GK+SV   ++ I +     + ++
Sbjct: 76  ITLIKVQNTRKSLAKIASNYYGDPSKQLFLIGVTGTNGKTSVTYMIKSILESQ---NNKV 132

Query: 148 GPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D       TTP  + L + L  +  +GV +V +E SSH L  +R+D   
Sbjct: 133 GLIGTIQNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVDECD 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+H+T   Y NAK +LF      ++  +I  DD YS  ++    N+
Sbjct: 193 FDIAVFTNLTQDHLDFHKTMDDYANAKAKLFR---MAKTACVINIDDDYSSLII---ENS 246

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +V++ G +   +I  K +       + T+ +E    D    +PG F VYN+L A  + 
Sbjct: 247 NAKVVTYGIKDYAYIMAKDIKNDIKGAKYTVQIEDIKSDIALKIPGLFSVYNSLAAISVA 306

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI    V   L+ + +  GRFE +  ++    + +DYAHT + LE ++K      +G
Sbjct: 307 FILGIPLQSVKIALKDVKI-KGRFEILDIDAPYN-VVIDYAHTPDGLENLMKAFGEYDTG 364

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R I++FGCGGDRD+GKRP MG++A   AD  I+T DNPRSEDP +I +EI  GI      
Sbjct: 365 RKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITSDNPRSEDPMQIISEIEMGIKNTKCP 424

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD---IIREIL 493
              IE  NR EAI+ A+ +    D++++AGKGHET  ++    K   +D D   I++EIL
Sbjct: 425 YKIIE--NRKEAIKYALSIAKDNDIVILAGKGHETYQVL----KDRVIDFDEREIVKEIL 478


>gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
 gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
          Length = 485

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 172/483 (35%), Positives = 260/483 (53%), Gaps = 32/483 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  V+ DSR I  G +F+A+ G + DGH FI +AI QGA A++      L+D   T+
Sbjct: 20  EVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFIGKAIEQGAVAVL------LEDMPNTL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N   + V++T       A+  YG   H   ++ VTGT+GK+++A+ +  + +  G   
Sbjct: 74  NDNVTYVQVESTENTAGKVATLFYGDPSHKLKLVGVTGTNGKTTIATLLYNMFREFG--- 130

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +++G  ST+ ++  D  +    TTP PI L + L+ + + G  +  +E SSH + QHR+ 
Sbjct: 131 YKVGLLSTVCNYIDDKAIPADHTTPDPIELNQLLADMVAAGCEYAFMECSSHAIHQHRIG 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+      FTNL RDH+DYH+T + Y NAK ++F + L K + AI  ADD  +  +M + 
Sbjct: 191 GLDFTGAIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLSKHAFAITNADDK-NGMIMVQN 248

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A  +  S      F    K+   H  + + + ++GK+    F   G+F V N L   G
Sbjct: 249 TKATIKTYSTKRMADF--RAKILECH-FEGMYLEIDGKEVGVQF--IGKFNVSNLLAVYG 303

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
               +G  +  +L  L  L  V GR E +  +  G    VDYAHT ++LE +L  I  + 
Sbjct: 304 AAKMLGKSTDEILLALSTLKSVNGRLEPI-QSPEGFTAIVDYAHTPDALENVLTAIHDVL 362

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               G II V G GG RD+GKRP+M + A+  +D  I+T DNPR EDP+ I  +++ G+ 
Sbjct: 363 DNKGGHIITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEDPQAIINDMMAGLD 422

Query: 438 GFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               K      +R EAIRTA  M  + DV++VAGKGHET   + NG K    D ++IREI
Sbjct: 423 ATQRKKVLNIVDRKEAIRTAAMMAKRGDVILVAGKGHETYQEI-NGVKHHFDDHEVIREI 481

Query: 493 LGL 495
            G+
Sbjct: 482 FGI 484


>gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
 gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
          Length = 496

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 171/488 (35%), Positives = 262/488 (53%), Gaps = 45/488 (9%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  E++  L I  +Q   + +I  ++ DSR+++  ++FV I G  +DGH +I +AI  G
Sbjct: 2   KNLNEVVTDLKIGVLQGDLDSRIAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDSG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V            + S   ++  D+TR  L+  ++  Y  +P   L V G +G +
Sbjct: 62  ATALLVEK-------EVEVDSEVTVIKTDDTRLGLAEVSAAFY-DYPSRELKVVGVTGTN 113

Query: 128 SVAS---FVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
              +    ++ I +++G     IG   + +S    D++ TTP  + + K L+ +  +GVT
Sbjct: 114 GKTTNTYLIESILKKAGYKLGLIGTIKNKVSDQTFDSQRTTPEALDINKLLAQMIDKGVT 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKES 242
           HV +E SSH LD +R+  I      FTN+ +DH+D+H +   Y  AK +LF  L    E 
Sbjct: 174 HVVMEVSSHALDLNRVAKIDFDVAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEK 233

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-- 300
            AII  DD +S E ++ A++   +VL+ G + K  +LK        + +TIS  G +F  
Sbjct: 234 TAIINIDDPHSDEFLEAANS---KVLTYGIE-KDANLKA-------KDITISPTGVEFGL 282

Query: 301 -------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  +    + G F VYN L A G  +++G+D   +   LE++  + GRFE +    
Sbjct: 283 ESTIGEMELDLNITGLFNVYNTLSAIGAGLSLGVDLDEIKAGLEEIQGIAGRFEIIEEAQ 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             G I VDYAHT +SL  IL+       GRIIVVFGCGGDRD+ KRPIMG++A++L D A
Sbjct: 343 DFGVI-VDYAHTPDSLRNILETAHDFVEGRIIVVFGCGGDRDKDKRPIMGQVAVELGDFA 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +VT DNPRSE+P +I A+I  GI            +I   +R EAI   IE     D++ 
Sbjct: 402 VVTSDNPRSEEPAEIIADIEVGIKEKDKIKGEDCDYIIIEDRAEAINYGIESAQPDDLVF 461

Query: 464 VAGKGHET 471
           + GKGHET
Sbjct: 462 IVGKGHET 469


>gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
 gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
          Length = 482

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 169/476 (35%), Positives = 266/476 (55%), Gaps = 31/476 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++  ++ +S+ ++ G++F AI G + DGH FI +A  +GA A+VV    S         
Sbjct: 21  KRVKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPVS--------- 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S  P+++V++TRK L   A   +GK  E  N++ +TGT+GK++    +++I   +G  + 
Sbjct: 72  SKVPVIIVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTG 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG   TI     +  L    TTP  I   + L      G  +V  E SSH LDQ+R+  
Sbjct: 132 LIG---TIYYRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYP 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +  A  FTNL +DH+DYH+T + YF +K +LF E   K    II ADD Y K ++K  H
Sbjct: 189 TRFEAVLFTNLSQDHLDYHKTMEDYFASKAKLFTEYESK--VKIINADDTYGKRLLKITH 246

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                +++ G +G    L           + I+ +GK+++F   L G+FQ YN   A   
Sbjct: 247 G---EIITYGKKGDLKILNFRTDFRG-SALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAY 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  GI+  L+   L+ ++V PGRFE V  +S    + +DYAHT +++E +L+  R ++ 
Sbjct: 303 ALWKGIEPDLIQRALKCVNV-PGRFEVV--HSDKFTVIIDYAHTPDAVENVLRTARKLSK 359

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---G 438
           G++I VFG GG+RD+ KRP+MGK A   +D+ I+T DNPR E+PEKI  +I+ GI     
Sbjct: 360 GKLISVFGAGGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGISEKDK 419

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            I + +R +AI+ AI+M  + D++ + GKGHE    +  G K    D  +++EILG
Sbjct: 420 VIIEADRRKAIKKAIDMAKEGDMVAILGKGHEDYQEI-KGVKYPFSDAQVVKEILG 474


>gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 498

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 249/465 (53%), Gaps = 27/465 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR ++ G +FVA+ G+  DGH F  QA+ +GA A++V     + D  A+I    P 
Sbjct: 26  ITTDSREVEPGSLFVAVRGHTVDGHRFAGQAVERGAVAVMVEE--PVADVPASI----PQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +VV +TR + +L A RL+G       ++ VTGT+GK++V   V+ +   +G  +  IG  
Sbjct: 80  VVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTV 139

Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + + S +     TTP  + + + L      G TH  +E SSH L + R  G+     +F
Sbjct: 140 GAKLGSTSWSLPNTTPEAVEVHRLLRRFVDAGATHAVMEVSSHALVERRAAGVSFACAAF 199

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELL------PKESP-AIIYADDAYSKEVMKRAHN 262
           TNL +DH+D+H T + Y  AK  LF  L       P  S  A+I ADD +S  VM  A  
Sbjct: 200 TNLTQDHLDFHGTMERYAAAKALLFSRLGNGTGDDPARSVYAVINADDPWSP-VMAEASA 258

Query: 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           A   +L+ G +    +  + V    +  +  +      F+   PL G F VYN L A  +
Sbjct: 259 AP--ILTYGIERAADVRARDVRLSASGARFWVDSPAGAFEIETPLIGRFNVYNTLAAVAI 316

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  G+ ++ + E +     VPGR E +    +   ++VDYAHT + LE +L ++R    
Sbjct: 317 ALVEGLAASEIQEGIRSYPSVPGRMERI-DEGQPFSVFVDYAHTPDGLENVLASVREFAP 375

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440
            R++VV GCGGDRD+ KRP M ++A+ LAD AI T DNPRSEDP  I AE+  G+ P + 
Sbjct: 376 ARVLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPVAILAEMRGGVEPAYA 435

Query: 441 ----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
               E+ +R  AI  AI      DV+V+AGKGHE   I+   EK+
Sbjct: 436 HKVREEVDRRRAIEMAIAEAEPGDVVVIAGKGHEDYQII-GAEKR 479


>gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
 gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
          Length = 495

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 155/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA A++  +           R  
Sbjct: 27  ITHLELDSRQIKSGDTFVAIRGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQIEYREA 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVMYLSELGQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLWDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 VTKPDTAQAIWARQVEYAESGITLNFDSSWGEGELHAPLIGEFNACNVLLAFATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    +L  V GR E      +  +I VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKSALLATAPQLRPVIGRMELFQREQKA-KIVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVVGLTHPERAHIEH- 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 HRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476


>gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
 gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
          Length = 485

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 180/494 (36%), Positives = 266/494 (53%), Gaps = 29/494 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P L+  + +      + ++  +++DSR ++ G++F A+ G K +G+ F  +A+ +GA A
Sbjct: 3   LPHLLKGVPLLCGGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFAEEALKKGASA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKS 127
           +V  S    +  SA   +  P+L+V+N+RK L+  A+ LYG +P+    IL VTGT+GK+
Sbjct: 63  VVTDSRKWFEKLSA---AGKPVLLVENSRKALATAAANLYG-NPQKELKILGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    + +   R G+ +  IG  S  S      +  TTPS + L K L  L ++G   V 
Sbjct: 119 TTTFLLFKALNRLGVKAGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKELKNRGCEFVV 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            E SSHGL QHR+ GI+     FTNL  +H+DYH   + YF AK +LF   L K S  ++
Sbjct: 179 CEVSSHGLHQHRVHGIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLFR--LSKLS--VV 234

Query: 247 YADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD Y   +   RA N G + ++ G + +   ++   AI  +  V I            
Sbjct: 235 NRDDPYGTTLSALRAVNGG-KTVTYGKKSRNYTIE---AIDPEGSVLIGTPKGAVKVKHN 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF  YN   A  L   +G +   + E  + + V PGR E V        ++VDYAHT
Sbjct: 291 LKGEFNGYNVTAAFSLLSELGFEPLNLKEAFKNVKV-PGRMEEVVPG-----VFVDYAHT 344

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L+  L  ++   SGR+IVVFGCGGDRD+ KRP+MGKIA  LAD  IVT DNPRSE P
Sbjct: 345 PDALQKALNALKKACSGRLIVVFGCGGDRDRTKRPVMGKIAATLADSVIVTSDNPRSEPP 404

Query: 426 EKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           E+I  E++ GIP  +        +R  AI  A+    + D L++AGKGHE    V  G+K
Sbjct: 405 EQIAKEVVAGIPEELRGKVTVELDRKRAIELALRGKGQADYLLIAGKGHENYQEVA-GKK 463

Query: 481 KMSVDCDIIREILG 494
               D + +RE+ G
Sbjct: 464 LPFSDQETVRELYG 477


>gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
 gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
          Length = 490

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 167/507 (32%), Positives = 270/507 (53%), Gaps = 43/507 (8%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  ELI+ L +  +    + +I+ + SDSR ++ G++FVA+ G   DGH +I  AI +GA
Sbjct: 2   ELKELIHPLEVLEVVGNTDVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIGKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
            AIV     +L D    +  + P+ + V ++   L    S  Y    +N++   VTGT+G
Sbjct: 62  AAIVCEEIPALSDEDIQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181
           K+++A+ + ++ ++ G    ++G  ST+ ++     +    TTP P+ L   ++ +   G
Sbjct: 122 KTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVEAG 178

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++ LP  
Sbjct: 179 CEYAFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPTS 237

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLS------VGYQGKFI--HLKKVCAIHNKQQVTI 293
           + A+  ADD   K  +    N   R L+        ++GK +  H +    + N ++V  
Sbjct: 238 AFALTNADD---KAGLVMLQNTAARKLTYSLRTLADFKGKILESHFEGTEMLVNGREV-- 292

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +    G F  YN L   G  +++G D   VL  L  LH V GRF+ +  + 
Sbjct: 293 ---------MTRFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTI-QSP 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +G    VDYAHT ++L  +L +I  +   +GR+I V GCGG+RD+GKRPIM K A  L+D
Sbjct: 343 KGYTAIVDYAHTPDALTNVLNSIHEVLNGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSD 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR E+P++I  +++ G+     +      +R +AI+TA  +  K DV++VAG
Sbjct: 403 QLILTSDNPRFEEPDEIIKDMVAGLNAADMEHTLCITDRAQAIKTATMLARKGDVILVAG 462

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE    V  G K    D + ++EI 
Sbjct: 463 KGHEDYQEV-KGVKHHFDDREQLKEIF 488


>gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
 gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus subtilis subsp. natto BEST195]
 gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
          Length = 494

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 169/476 (35%), Positives = 246/476 (51%), Gaps = 50/476 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++ +I  +  DSR ++ G +FV + G   DGH F  +A+  GA AIV      +      
Sbjct: 20  QDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV------ 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
              N P+++V  + + LS+ +   YG+  + +  + +TGT+GK+S    V +I +++G  
Sbjct: 74  ---NVPVIIVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  IG   T+     D  L    TTP  + L K    ++ + V    +E SSH L   R+
Sbjct: 131 TGLIG---TMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSK 254
            G       FTNL +DH+DYH+T   Y +AK  LF +L      E P  A++ ADD  S 
Sbjct: 188 HGCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASA 247

Query: 255 --EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------- 303
             E +  AH     + + G +     + K         ++I+ +G  FD +         
Sbjct: 248 YFEKVTAAH-----ISTYGIKNDADVMAK--------NISITAQGTSFDLVTNKGTKHIT 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+F VYN L A   CIA GI   ++ E +E+LH V GRFE V        I VDYA
Sbjct: 295 MSLVGQFNVYNVLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVI-VDYA 353

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +SLE +L+  R +T G++ VV GCGGDRD+ KRP M KIA++LAD  I T DNPRSE
Sbjct: 354 HTPDSLENVLETCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSE 413

Query: 424 DPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DP  I  ++  G+    +    NR +AI  AI    K DV+++AGKGHET   + N
Sbjct: 414 DPRAILRDMEAGVENAYYHSIANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGN 469


>gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 486

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 173/506 (34%), Positives = 271/506 (53%), Gaps = 38/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++++YK   E+++  +       +  ++ +  DSR IQ+  +FVAI G+  +GH FI
Sbjct: 1   MLLKEILYKVALEVVHGST-------DVAVHNIHFDSRKIQSNDVFVAIRGSVSNGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AIA GA+AIV  +          + S    + V +T   L+  A+  Y    +   ++
Sbjct: 54  DKAIALGAKAIVCDT------LPTNLLSQITYVKVKDTNAALAYLATNFYDNPSQKLQLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKAL 174
            VTGT+GK+++AS + Q+ +++G   F++G  ST+     +       TTP  + +   L
Sbjct: 108 GVTGTNGKTTIASLLYQLFKKAG---FKVGLLSTVKILVDEIEHKATHTTPDSLTINYYL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +   G  +  +E SSHG+ Q R +G++ + G FTNL  DH+DYH T   Y + K   F
Sbjct: 165 DKMVEAGCQYCFMEVSSHGIHQKRTEGLQFVGGVFTNLSHDHLDYHPTFSDYRDVKKSFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L PK + A+   DD     +M+   N   R LS  Y  K     K   I N Q   + 
Sbjct: 225 DNL-PKNAFALSNIDDKNGAVMMQ---NTKARKLS--YALKTYADYKAIIIEN-QLSGLL 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  + +    L G F  YN L   G+ I +GI+   VL  L +L  V GRF+F+ +   
Sbjct: 278 LKINEQEVWVRLIGTFNAYNLLAIYGVAIELGIEKLEVLRLLSELESVSGRFQFIVSKQN 337

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              I VDYAHT ++LE +L  I  I +   ++I + GCGGDRD+ KRPIM  IA  ++D 
Sbjct: 338 ITAI-VDYAHTPDALENVLSTINDIRTRNEQLITIVGCGGDRDKTKRPIMANIASQMSDK 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AI+T DNPR+E+PE I AE+  GI       ++   +R +AI+TA ++    D++++AGK
Sbjct: 397 AILTSDNPRTENPETIIAEMEAGITAVNYKKYMSIIDRKQAIKTACQLAQPNDIILIAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET   + NG +    D  I++EIL
Sbjct: 457 GHETYQEI-NGVRHDFDDMQIVKEIL 481


>gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 486

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 262/506 (51%), Gaps = 48/506 (9%)

Query: 13  ELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+N++ +  +     R+I E+  DSR +    ++VA+ G   DGH FI  AI +GA A+
Sbjct: 5   ELVNRIPVLEIHGDNSREITELVIDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKGAAAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           V       ++   T+  N   ++V ++ K L   AS  YG   + +  + VTGT+GK+SV
Sbjct: 65  VC------EELPETLAENVTYILVKDSSKALGYLASNYYGNPSQKLKLIGVTGTNGKTSV 118

Query: 130 ASFVQQICQRSG-----LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ +  + +  G     LS+ +I     I         TTP  I + + L+    +G   
Sbjct: 119 STLLFDVFKNLGYPAALLSTVEIRIGEEIIPATH----TTPDVITINRILAEAVEKGCEF 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSHG+ Q+R++G+      FTNL  DH+DYH+T + Y   K R F+EL    + A
Sbjct: 175 AFMEVSSHGIAQNRIEGLHFKIAGFTNLTHDHLDYHKTFEEYLKTKKRFFDEL-EDTAIA 233

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGK 298
           I   DD           N    + +   + K   LK +   H K        + ++  GK
Sbjct: 234 ITNVDDK----------NGNVMLQNTKAKKKSYALKTMADYHGKLLEVDFNGMLLNFNGK 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +F     L G+F VYN L+  G+   +G +   +L+ + KL  V GRFE     S GG  
Sbjct: 284 EF--WTTLTGKFNVYNLLLVFGIAAELGFEQDEILQAISKLKRVSGRFETF--KSDGGIF 339

Query: 359 Y-VDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VDYAHT ++LE IL +I  I +   R+I VFGCGGDRD  KRP MG IA   + +AI+
Sbjct: 340 FIVDYAHTPDALENILDSINDIRTKNERLITVFGCGGDRDHSKRPEMGNIATKKSTLAII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+EDP +I  EI  G+       +    +R EAI+ AI+    +D+++VAGKGHE
Sbjct: 400 TSDNPRTEDPTQIIKEIEAGVEPQNFSKYTSIPDRKEAIKMAIKFAEPKDIVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496
           T   + NG K    D ++I E+  L+
Sbjct: 460 TYQEI-NGVKHHFDDKEVINELWKLM 484


>gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
 gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
          Length = 484

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 182/487 (37%), Positives = 262/487 (53%), Gaps = 53/487 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR +  G +FVAI G K DGH FI QAI  GA A+VV+    L D  + ++  
Sbjct: 23  IKNICYDSRKVTPGSLFVAIEGFKTDGHRFIRQAIDNGAVAVVVTRDVPLPDGVSVVK-- 80

Query: 90  TPILVVDNTRKFLSLFA-SRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                V+++R  LSL A SR +  +P+   +++ VTGT+GK+SV   V+ I ++SG    
Sbjct: 81  -----VEDSR--LSLAALSRAFYDYPDKQLHLIGVTGTNGKTSVTYMVKSILEQSGR--- 130

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI +   D  L    TTP    L      ++  G+  V +E SSH L  +R+ G
Sbjct: 131 KVGLIGTIQNMIGDVVLHTERTTPESSDLYALFRQMADGGIQDVVMEVSSHSLALNRVAG 190

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLP---KESPAIIYADDAYSKEV 256
            +   G FTNL  DH+D+H     YF AK++LF+   L+     +S  +   D   SK V
Sbjct: 191 CRFDIGIFTNLTEDHLDFHSNMDDYFAAKLKLFQNSGLIATNVDDSYGVKLKDMFVSKTV 250

Query: 257 M-----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 + AH     +LS      F                I + G     +  +PG F 
Sbjct: 251 YTYGIEREAHVTASNILSDAKGSTF---------------DIDICGDRRPVIINIPGRFS 295

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYNAL AA  C A+G+ +  + + L+ L  VPGRFE +GT++    + +DYAHT + LE 
Sbjct: 296 VYNALAAAAACYAMGVSADDISKGLQALKSVPGRFEVLGTDT-DFTVIIDYAHTPDGLEN 354

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           ILK+++ I  GR+I +FGCGGDRD  KRPIMG+I    AD  I+T DNPRSEDP  I  +
Sbjct: 355 ILKSVKDIAKGRVIALFGCGGDRDAAKRPIMGEIGGRYADFCILTSDNPRSEDPMAIIRQ 414

Query: 432 IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-C 486
           I  GI      +I   NR +AI+  ++   K D+L++AGKGHET  I+   +K +  D  
Sbjct: 415 IEEGIRKTHCPYIVIENRRQAIKYGLQTARKDDILLLAGKGHETYQILK--DKTIHFDER 472

Query: 487 DIIREIL 493
           +++RE+L
Sbjct: 473 EVVRELL 479


>gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
 gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
          Length = 496

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 250/468 (53%), Gaps = 33/468 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +V++DSR ++AG +F+A+ G   DGH ++ +AI  GA A++VS           +  
Sbjct: 25  EILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAVAVLVSK-------PVDVSG 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  ++ V++TR  + +     +  +P N   ++ VTGT+GK++ +  ++ I +  G    
Sbjct: 78  DVCVITVEDTRAAMMVCVPYFF-DYPANSMRMIGVTGTNGKTTTSHMIRHILKAQG---H 133

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   T+     D       TTP  + L   L  +  +GVT+  +E SSH L   R+ G
Sbjct: 134 KVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTYCVMEVSSHALALGRVSG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
           ++     FTNL +DH+D+H+T + Y  AK +LFE++     +     A+I  DDAY   V
Sbjct: 194 VEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAVINIDDAYGHRV 253

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +++   A     S+   G  ++   V       + T+S +G D+       G F VYN L
Sbjct: 254 VEKT-TAPIITYSIDGSGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTL 311

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G C+  GI    + + L+    VPGRFE +    +   + VDYAHT + LE IL+  
Sbjct: 312 AAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTA 370

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DNPR+EDP +I  ++  G+
Sbjct: 371 KAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVEVGV 430

Query: 437 PGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
              + +G       +R EAI+ AI+     D++++AGKGHE   I+ +
Sbjct: 431 KDGLREGTHYEVIVDRREAIQHAIQNAQPGDIVLIAGKGHEDYQILKD 478


>gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
 gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
          Length = 498

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 256/504 (50%), Gaps = 59/504 (11%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  EL+N  S   +    ++ I ++++DSR ++ G +F+ + G   DGH ++ +A+ +G
Sbjct: 2   KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124
           A AI+     S+ +          ++ V NTR  +   A  L+  +P     ++AVTGT+
Sbjct: 62  AIAIIAEKKISVPE-------GVTVVYVKNTRTVMEKIAP-LFFDYPSKSMRMIAVTGTN 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQ 180
           GK++    +  I +++G   ++ G   TI +   D       TTP  I L + L  +   
Sbjct: 114 GKTTTTHIISHILKKAG---YKTGVIGTIHALIGDEEFETHNTTPDIIDLQRLLYKMKKA 170

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-----E 235
            VTHV +E SSH L   R++G +     F+NL  DH+D+H+T   Y NAK +LF     E
Sbjct: 171 KVTHVCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEE 230

Query: 236 ELLPKESPAIIYADDAYSK--------------EVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             +     A I  DD YS                      +A  +V+S  + GK  + K 
Sbjct: 231 GQVKPNKNACINIDDDYSHIMIDAIKDRKLCKLHTFSMNRDAELKVISTEFTGK--NTKF 288

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +C   NK+          +     L G F VYN + A    ++ GID   +++ L     
Sbjct: 289 ICVYKNKE----------YPVTVKLMGRFNVYNIMAAMSAALSEGIDFNFIIKALTDFTN 338

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VPGRFE +        + VDYAHT + LE IL   R IT+G+IIVVFGCGGDRD  KRPI
Sbjct: 339 VPGRFELIDEGQEFS-VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRPI 397

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAI 453
           MG+IA   +DIAIVT DNPR+EDP  I  +++ G+    EK N        R  AI+ AI
Sbjct: 398 MGRIAAKYSDIAIVTSDNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAI 457

Query: 454 EMLNKQDVLVVAGKGHETVHIVTN 477
           E+    D++++AGKGHE   I+ N
Sbjct: 458 EIARVNDIVIIAGKGHEDYQILKN 481


>gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris
           DP4]
 gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris DP4]
          Length = 486

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 249/474 (52%), Gaps = 17/474 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++ +DSR +  G +FVA+ G   DG  FI QA+AQGA  +VV  A  LQ       + 
Sbjct: 19  LPQIRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA-TMVVCRADGLQHLP---EAA 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             + V D+ R  L       YG    P  ++ VTGT+GK+++   ++ +   +G     +
Sbjct: 75  FAVAVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVL 134

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G  S       +   LTTP  + L + L  ++  GV    +E SSH LDQ R+ GI+   
Sbjct: 135 GTVSYRWPGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAG 194

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
              TNL +DH+DYH   + YFNAK RLF EL        + ADD + + ++     A G 
Sbjct: 195 AVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVSKHCAVNADDPWGRRLLADLPGAVGF 254

Query: 266 RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +      G + +H + +        + +  EG+ ++   PL G     N L    + + 
Sbjct: 255 ALTGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLG 314

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+  A  + HLE    VPGR E + TN RG  ++VDYAHT ++L  +L+ +R +   RI
Sbjct: 315 LGLSPADFV-HLENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRI 372

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441
           + VFGCGG+RD+ KRP+MG      AD+A++T DNPR EDP  I  ++  G+ G    + 
Sbjct: 373 VTVFGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVA 432

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494
           + +R +AI  A+EML   D L+VAGKGHE    V  G++K+   D   IREILG
Sbjct: 433 EADRRKAIALALEMLRPGDALLVAGKGHEDYQQV--GDRKLPFSDQQTIREILG 484


>gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 493

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 171/495 (34%), Positives = 257/495 (51%), Gaps = 22/495 (4%)

Query: 17  QLSIFPMQWRE-RKINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           QLS   + W E  ++ E+SS   DSR +  G +FVAI G+  DG  FIP AI QGA A++
Sbjct: 3   QLSELLLPWCELNQVVEISSMTLDSRKVTTGCLFVAIKGHAVDGRQFIPVAIKQGASAVL 62

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSS 128
             S    +  + +    TPI+ +D     LS  A R Y  H E     ++ +TGT+GK++
Sbjct: 63  AQSDEVNKTGTISFLDQTPIIYLDALSIKLSAVAGRFY--HAEQRKMQLVGITGTNGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           ++  + Q     G  +  +G T   + +  +    TT SPI + + L+ L + G    ++
Sbjct: 121 ISQIIAQWATLLGKPAGVMGTTGNGLLTDLKPALNTTGSPIEIQQTLTDLENIGAKLTAL 180

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL Q R++ +   A  FTNL RDH+DYH     Y  AK  LF    PK S  II 
Sbjct: 181 EISSHGLVQGRVNALNFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHSPKYS--IIN 238

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ADD      +K   NA    L+ G    + GK +    V    +  Q++++ +    D  
Sbjct: 239 ADDTVGASWLKELPNAVGVSLNEGNLSFHSGKKVFATSVIYSTDGIQISLNSDWGTADLS 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G F   N LVA    +++G D   + +   KL  V GR E   +     ++ VDYA
Sbjct: 299 VPLIGAFNANNILVAFATLLSLGYDITELADAAPKLTAVIGRMELFSSEGNA-KVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L+  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD+ I++DDNPRSE
Sbjct: 358 HTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVIILSDDNPRSE 417

Query: 424 DPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I  +++ G+  P        R +A + A+   +K D++++AGKGHE   ++   E 
Sbjct: 418 DPSLITKDMLAGLNQPDIAHVIHQRFDACQFALSQASKHDIILLAGKGHEEYQVLAT-ET 476

Query: 481 KMSVDCDIIREILGL 495
               D +  +++LGL
Sbjct: 477 IHYSDRETAQKLLGL 491


>gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 488

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 166/474 (35%), Positives = 244/474 (51%), Gaps = 15/474 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E++ DSR  +AG +FVAI G++ DG  +IPQA+  GA A++  +    Q         
Sbjct: 18  LTEMTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQHLQVRYEQQ 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++      + LS  A   YG+  +   ++ VTGT+GK++ A  + Q  +  G +S  +
Sbjct: 78  VPLIAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKILGHTSAVM 137

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +    ++   TT S + +  +L+   +QG    ++E SSHGL QHR++ +   A
Sbjct: 138 GTIGNGLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVSSHGLVQHRVEAVHFSA 197

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKRAHN 262
             FTNL RDH+DYH T + Y  AK RLF EL  +    II ADD    A+  E M  A  
Sbjct: 198 AVFTNLSRDHLDYHHTMENYAAAKKRLFSELDSRHH--IIDADDPVGAAWLAE-MPEAVA 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                     Q K++    V   H    +       + +    L G F V N L+     
Sbjct: 255 VSANADFAPRQAKWLKAVNVSFNHKGASIQFESSWGNGELQSALIGAFNVSNLLLIMATL 314

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G D A ++    KL  V GR E +    +   + VDYAHT ++LE  L+  R    G
Sbjct: 315 LALGYDLAELIGSAHKLTGVCGRMEMLHAPHKP-TVIVDYAHTPDALEKALQAARLHCHG 373

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFI 440
           ++  +FGCGGDRD GKRP+M KIA  LAD  I TDDNPR+ED  +I A+I+ G   P  +
Sbjct: 374 KLWCIFGCGGDRDSGKRPLMAKIAEQLADKVIATDDNPRTEDHTQIMADILKGFIHPQAV 433

Query: 441 EK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +    R EAI TAI+   + DV+++AGKGHE   I+   +   S D ++ R  L
Sbjct: 434 QVIHQREEAIATAIQSAVENDVILIAGKGHEDYQIIGKTKHHFS-DQEVARHYL 486


>gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 489

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 247/459 (53%), Gaps = 20/459 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +FVA+ G++ D   F+PQ+I+ GA A+V+ +    +  S   ++N P++  
Sbjct: 24  DSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLETDLENEHLSIQWQNNVPVIHY 83

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            +    LS  A + Y +HP     ++ VTGT+GK++V+  + Q     G  +  +G    
Sbjct: 84  YHLSANLSALAGKFY-EHPSEKLTLVGVTGTNGKTTVSQLLAQWATLFGHKAAVMGTIGN 142

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +    ++ + TT S + + + L+    +G    S+E SSHGL QHR++ +K  A  FTN
Sbjct: 143 GLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSSHGLVQHRVEALKFKAAIFTN 202

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GCRVL 268
           L RDH+DYH+T + Y  AK R F +L P+    I+ ADD      +    N     CR  
Sbjct: 203 LSRDHLDYHETMEKYAEAKKRFFVDLAPELQ--ILNADDPIGAAWLSELPNGIAVSCRPD 260

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 ++++  ++C  H    + ++    +     PL G F V N L+A  + +A+G  
Sbjct: 261 FQPTSKQWLYATQICFTHEGAVIDVASSWGNGTLHSPLIGAFNVSNLLLATAVLLALGYS 320

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              ++  + +L  V GR E +    + G+  + VDYAHT ++LE  L   R    G++  
Sbjct: 321 FDELIRTVSQLKGVNGRMELI---KKAGKPTVIVDYAHTPDALEKALNAAREHCKGKLWC 377

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--- 443
           +FGCGGDRD GKRP+M K A   AD+ IVT DNPR+EDP KI A+I+ G     + G   
Sbjct: 378 IFGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEADILTGFSRMEDVGVIP 437

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           +R EAI+  IE   + DV+V+AGKGHE   I+  G+K +
Sbjct: 438 DREEAIKFTIENAVENDVIVIAGKGHENYQII--GDKTL 474


>gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia succiniciproducens MBEL55E]
 gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 488

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 259/476 (54%), Gaps = 15/476 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+N ++ DSR ++ G +FVAI G+  DG  FIPQAI+ GA A++     + +    + ++
Sbjct: 18  KLNRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQN 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P++   +  + LS  A + Y K P     ++ VTGT+GK++V+  + Q  Q  G    
Sbjct: 78  QIPVISYYHLSEHLSDIADQFY-KAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPA 136

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +    +    TT S I +  +L+    QG    ++E SSHGL QHR++ +  
Sbjct: 137 VMGTIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSHGLVQHRIEALHF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            AG FTNL RDH+DYH + + Y +AK RLF EL  ++   II ADD    + ++   +A 
Sbjct: 197 AAGIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQK--IINADDEIGVQWLRELPDAV 254

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFP--LPGEFQVYNALVAAGL 321
               +  YQ    +  KV A+  N Q  TI+        +    L G F V N ++    
Sbjct: 255 AVSCNPAYQPTQENWLKVTAVSFNSQGATITFNSSWGGAILTSRLIGAFNVSNLMLVLAT 314

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G     +L+ + +L  V GR E +    +   + VDYAHT ++LE  L+  R   +
Sbjct: 315 LLSLGYSLDELLKTVSQLTGVCGRMEMLHAAHKP-TVIVDYAHTPDALEKALQAARAHCT 373

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439
           GR+  VFGCGGDRD+GKRP+M ++A   AD  IVTDDNPR+ED  +I  +I+ G   P  
Sbjct: 374 GRLWCVFGCGGDRDRGKRPLMAQVAERFADYVIVTDDNPRTEDRHQIVQDIVAGFKRPES 433

Query: 440 IE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +    +R +AIRTA++   + DV+++AGKGHE   I+ + +   S D + +++ LG
Sbjct: 434 VNIVYDREQAIRTAVQSAVENDVILIAGKGHEDYQIIGHTKHHFS-DQEAVKKYLG 488


>gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
 gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
          Length = 495

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R  
Sbjct: 27  ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  S  +G 
Sbjct: 87  VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKSAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + S+E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTSLETSSHGLVQGRVKKLNFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRV 267
           F+NL RDH+DYH T  AY  AK  LF E   +   AII  DDA   + +K+  H  G  +
Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AIINVDDAVGAQWVKQLPHAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L+     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 LAQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    +L  V GR E      +  ++ VDYAHT ++LE  L+ +    +G++  +
Sbjct: 325 EKSALLATAPQLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALHVHCTGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
           FGCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 384 FGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMLAGLTHPERAHIEH- 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NR +A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 NRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476


>gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
          Length = 485

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 249/476 (52%), Gaps = 44/476 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS           +
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------EVEM 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138
           + N   +++D+ R  L   AS  Y + P+    I+ VTGT+GK+S    V+++       
Sbjct: 71  KHNVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPIT 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G   ++IG       F   N  TTP  + L K       + + +V +E SSH L+  R
Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGR 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +      FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +  
Sbjct: 184 VEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDVNNSVINIDDEYGKRLYD 242

Query: 259 RAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                   ++S G      +G ++    +   + KQ   +          F L G+F +Y
Sbjct: 243 EFIVDNSEIISYGIDSGDLEGDYLDDGYIDIKYKKQVEKVK---------FALLGDFNLY 293

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++
Sbjct: 294 NTLGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDC-GQNYKVIVDYAHTPDALVNVI 352

Query: 374 KNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++
Sbjct: 353 VAARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDV 412

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G      +  + +R +AI+ AI M  K D++++ GKGHET HI+  G KK   D
Sbjct: 413 KKGFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
 gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
          Length = 485

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 249/476 (52%), Gaps = 44/476 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS           +
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------EVEM 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138
           + N   +++D+ R  L   AS  Y + P+    I+ VTGT+GK+S    V+++       
Sbjct: 71  KHNVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPIT 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G   ++IG       F   N  TTP  + L K       + + +V +E SSH L+  R
Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGR 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +      FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +  
Sbjct: 184 VEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDVNNSVINIDDEYGKRLYD 242

Query: 259 RAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                   ++S G      +G ++    +   + KQ   +          F L G+F +Y
Sbjct: 243 EFIVDNSEIISYGIDGGDLEGDYLDDGYIDIKYKKQVEKVK---------FALLGDFNLY 293

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++
Sbjct: 294 NTLGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDC-GQNYKVIVDYAHTPDALVNVI 352

Query: 374 KNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++
Sbjct: 353 VAARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDV 412

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G      +  + +R +AI+ AI M  K D++++ GKGHET HI+  G KK   D
Sbjct: 413 KKGFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia typhi str. Wilmington]
 gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington]
          Length = 498

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 269/503 (53%), Gaps = 59/503 (11%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +NQL      ++  KIN +S++S+ ++   +F A+ G   DG+ FI  A+  GA  ++  
Sbjct: 11  LNQL------FKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITE 64

Query: 75  SAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +           + NT    ++ V++  + L       Y K P+N+++VTGT+GKSSV S
Sbjct: 65  N-----------KKNTVIDKVIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVS 113

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ Q        +  IG T  +  F  +N       LTT   +   K    L+   + ++
Sbjct: 114 YIAQTYFLLRKKAAFIG-TIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYL 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + EASSHGL+Q RL   K+   SFT+  +DH+DYH T++ Y  AK++LF + L     AI
Sbjct: 173 AFEASSHGLEQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAI 232

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + +D    + V     N   + ++VG +G  + + K+         T S+ G++ DF+F 
Sbjct: 233 LNSDIEEIEFVKDYLRNNNVKFITVGKKGD-VQITKI---------TCSLTGQNIDFIFN 282

Query: 306 ---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRG 355
                    + G FQ  N L+AA      G     ++E L K+  V GR E + GTN   
Sbjct: 283 NIIYNLHTLIIGSFQASNLLIAALTLYYTGFKFDEIIEALSKVKPVKGRMERIDGTN--- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I+VDY+HT ++LE  L  ++ I    G++ V+FGCGGDRD+ KR +MGKIA   AD  
Sbjct: 340 --IFVDYSHTPDALEKALIELQNIKPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNV 397

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+TDDNPR EDP+ IR EII GI    + E  +R EAI+  I  L + D+L++AGKGHE 
Sbjct: 398 IITDDNPRFEDPKLIRTEIIRGIGTATYTEIESREEAIKYGINNLKQDDILLIAGKGHEN 457

Query: 472 VHIVTNGEKKMSV-DCDIIREIL 493
             IV  G+KK+   D +++R+ L
Sbjct: 458 YQIV--GDKKLPFDDSEVVRKYL 478


>gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Rickettsia typhi]
          Length = 492

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 269/503 (53%), Gaps = 59/503 (11%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +NQL      ++  KIN +S++S+ ++   +F A+ G   DG+ FI  A+  GA  ++  
Sbjct: 5   LNQL------FKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITE 58

Query: 75  SAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +           + NT    ++ V++  + L       Y K P+N+++VTGT+GKSSV S
Sbjct: 59  N-----------KKNTVIDKVIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVS 107

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ Q        +  IG T  +  F  +N       LTT   +   K    L+   + ++
Sbjct: 108 YIAQTYFLLRKKAAFIG-TIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYL 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + EASSHGL+Q RL   K+   SFT+  +DH+DYH T++ Y  AK++LF + L     AI
Sbjct: 167 AFEASSHGLEQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAI 226

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + +D    + V     N   + ++VG +G  + + K+         T S+ G++ DF+F 
Sbjct: 227 LNSDIEEIEFVKDYLRNNNVKFITVGKKGD-VQITKI---------TCSLTGQNIDFIFN 276

Query: 306 ---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRG 355
                    + G FQ  N L+AA      G     ++E L K+  V GR E + GTN   
Sbjct: 277 NIIYNLHTLIIGSFQASNLLIAALTLYYTGFKFDEIIEALSKVKPVKGRMERIDGTN--- 333

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I+VDY+HT ++LE  L  ++ I    G++ V+FGCGGDRD+ KR +MGKIA   AD  
Sbjct: 334 --IFVDYSHTPDALEKALIELQNIKPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNV 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+TDDNPR EDP+ IR EII GI    + E  +R EAI+  I  L + D+L++AGKGHE 
Sbjct: 392 IITDDNPRFEDPKLIRTEIIRGIGTATYTEIESREEAIKYGINNLKQDDILLIAGKGHEN 451

Query: 472 VHIVTNGEKKMSV-DCDIIREIL 493
             IV  G+KK+   D +++R+ L
Sbjct: 452 YQIV--GDKKLPFDDSEVVRKYL 472


>gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
 gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
          Length = 511

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 170/472 (36%), Positives = 261/472 (55%), Gaps = 33/472 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV---VSSAYSLQDFSA 84
           RK+  ++ +S+ +Q   +FVA+ G + DGH FI QAI +GA A+V   V  A++ +   A
Sbjct: 35  RKLTHLTDNSQEVQPRGLFVAVRGERVDGHRFIEQAIERGAVAVVGEFVPEAFAERFPKA 94

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
           +       + V N+R+ L + A+ ++  +P     ++ +TGT+GK++ A  V  +    G
Sbjct: 95  SF------VQVSNSRRALGILAT-IFHMNPARRLRLIGITGTNGKTTTAFLVYHMLNAIG 147

Query: 142 LSSFQIGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             +  IG  +    F +       TTP PI L   L  ++     +  +E SSH L+Q R
Sbjct: 148 QETGLIG--TVCYRFGRHELPASNTTPGPIELNHLLRRMTGVPCKNCVMEVSSHALEQER 205

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + G+      FTNL RDH+DYH + +AY  AK +LF+ L  + +   +Y  D  S   M 
Sbjct: 206 VAGLSFSIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDGLTFRAT--ALYNIDDPSGPAMV 263

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A C  +S G Q +   ++     H+ + +T++++G+ F   FPL G F  YN L A
Sbjct: 264 ADTQACC--ISYG-QREDAQIRMRIVGHSLEGLTLNIDGR-FQ-RFPLVGCFNAYNLLAA 318

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+  A+G+D  L+LE L ++  +PGRFE   T   G    VDYAHT ++LE +L+ IR 
Sbjct: 319 YGVGRAMGLDPDLLLEALGRVPQIPGRFERF-TFEDGTTAIVDYAHTPDALENVLRTIRE 377

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     R+  VFGCGG+RD+GKRP+MG +A  LAD  IVT DNPRSEDP +I  +I  G+
Sbjct: 378 VMPEGARLWCVFGCGGERDRGKRPMMGAVAERLADCVIVTSDNPRSEDPLQIFEDIRQGM 437

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                 + + +R  AI  A ++    DV++VAGKGHE   I+  G +K+ +D
Sbjct: 438 RHPEAALWEVDRARAIEQAAKLCRPGDVVLVAGKGHEAYQII--GTEKIPLD 487


>gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
 gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
          Length = 485

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 252/488 (51%), Gaps = 50/488 (10%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  L    M     +I E+  D+R +    +F+ I G   DGH F   A  +GA AI+ 
Sbjct: 6   LLEALPFVKMPAVNPEITELVQDNRLVTKNSLFICIKGYTVDGHKFAVDAAKRGAAAILA 65

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVAS 131
                +         + P+++V NT++ ++L A R YG+      ++ +TGT+GK++ + 
Sbjct: 66  EKPVDV---------DIPVIIVRNTKRAMALLADRFYGQPSRKFRLVGITGTNGKTTTSH 116

Query: 132 FVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +++I + +G ++  IG     I     + + TTP  + L K    ++++GVT   +E S
Sbjct: 117 IIEKIYRDAGRTTGLIGTMYMKIGDETLETKNTTPDSLTLQKTFHEMNARGVTDCVMEVS 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AI 245
           SH L + R+ G       FTNL +DH+DYH+T   Y  AK  LF +L    P++ P  AI
Sbjct: 177 SHSLVEGRVHGCDYDIAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDKPKYAI 236

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADDA SKE  ++          + +   F+           + + +   G  F  + P
Sbjct: 237 LNADDAASKE-FEQVTAVPVITYGIDHDADFM----------AENIDMHARGTTFTLVTP 285

Query: 306 ---------LPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                    L G+F VYN L  +AAG+   + +DS  V++  E +  V GRFE V     
Sbjct: 286 FEKREVRLKLAGKFSVYNMLAAIAAGVVSGVPLDS--VIKTAEAMEGVRGRFELVN---- 339

Query: 355 GGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           GG+   + VDYAHT +SLE +LK IR     +I VV GCGGDRD+ KRP+M +IA   A 
Sbjct: 340 GGQDFSVIVDYAHTPDSLENVLKTIRQFARKKIFVVVGCGGDRDKTKRPVMAQIACKYAH 399

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPRSEDP  I  E+  G+ G  +    +R EAI+TAI      DV+++AGKGH
Sbjct: 400 YPIFTSDNPRSEDPIAILREMEKGVEGEQYECIPDRREAIKTAIFRAEAGDVVLIAGKGH 459

Query: 470 ETVHIVTN 477
           ET  I+ N
Sbjct: 460 ETYQIIGN 467


>gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter lovleyi SZ]
 gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ]
          Length = 506

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 175/484 (36%), Positives = 257/484 (53%), Gaps = 41/484 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR + AG +F A+ G+K DGH FI QA+         ++A  L+D S      
Sbjct: 23  VSALTCDSREVTAGTLFFALHGSKVDGHRFISQAVT------AGAAAVVLEDASYA-PEQ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P L V N R+ ++L A+R +G    ++  + +TGT+GK++ +  ++ I   +GL    +
Sbjct: 76  VPWLQVTNGRQAMALMAARFFGNPTRDLPLIGITGTNGKTTTSYLLEGILTAAGLPPAVL 135

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G  S    +   +   TTP    L      L+  G     +E SSH L+Q R+DG     
Sbjct: 136 GTISYRFGTTCIEASHTTPESTELQGIFRQLADAGAQAFVMEVSSHSLEQRRVDGSVFDI 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SP---AIIYADDAYSKEVMKRAH 261
           G FTNL RDH+DYH T QAY +AK RLF ELL  +  +P   A+I ADD  ++E ++   
Sbjct: 196 GVFTNLTRDHLDYHGTMQAYGSAKQRLFSELLRPDDRTPLRHAVINADDPAAEEFIR--- 252

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            A C V+  G   G  + +++  +  N     +     +  F   L G F + N L AA 
Sbjct: 253 AAACPVIRYGLAPGSEVTVRETTSSVNGISAILVTPQGEQPFHSRLLGGFNLSNILAAAA 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A+G+    +++ +E+   VPGR E V  N  G    VDYAHT ++LE +L  ++ + 
Sbjct: 313 AGVALGLPLQAIIQGIEQHTTVPGRLERV-ENRAGVTCLVDYAHTGDALENVLSTLKDLA 371

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---- 436
             RII VFGCGGDRD GKRPIMG+IA   +D+A+VT DNPR+EDP +I  +I  GI    
Sbjct: 372 GARIITVFGCGGDRDNGKRPIMGRIAAGYSDLAVVTSDNPRTEDPHEILRQIRAGILPLG 431

Query: 437 ---------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                           GF+   NR EAIR A+ +    D+L++AGKGHE   I+  G+ K
Sbjct: 432 LREYRPDELTAPPEDKGFVMLENRREAIRLAVRLARPGDILLLAGKGHEDYQII--GQTK 489

Query: 482 MSVD 485
              D
Sbjct: 490 QHFD 493


>gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           RCH1]
          Length = 486

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 249/474 (52%), Gaps = 17/474 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++ +DSR +  G +FVA+ G   DG  FI QA+AQGA  +VV  A  LQ       + 
Sbjct: 19  LPQIRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA-TMVVCRADGLQHLP---EAA 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             + V D+ R  L       YG    P  ++ VTGT+GK+++   ++ +   +G     +
Sbjct: 75  FAVAVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVL 134

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G  S       +   LTTP  + L + L  ++  GV    +E SSH LDQ R+ GI+   
Sbjct: 135 GTVSYRWPGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAG 194

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
              TNL +DH+DYH   + YFNAK RLF EL        + ADD + + ++     A G 
Sbjct: 195 AVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVGKHCAVNADDPWGRRLLADLPGAVGF 254

Query: 266 RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +      G + +H + +        + +  EG+ ++   PL G     N L    + + 
Sbjct: 255 ALTGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLG 314

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+  A  + HLE    VPGR E + TN RG  ++VDYAHT ++L  +L+ +R +   RI
Sbjct: 315 LGLSPADFV-HLENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRI 372

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441
           + VFGCGG+RD+ KRP+MG      AD+A++T DNPR EDP  I  ++  G+ G    + 
Sbjct: 373 VTVFGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVA 432

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494
           + +R +AI  A+EML   D L+VAGKGHE    V  G++K+   D   IREILG
Sbjct: 433 EADRRKAIALALEMLRPGDALLVAGKGHEDYQQV--GDRKLPFSDQQTIREILG 484


>gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
 gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
          Length = 490

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 172/472 (36%), Positives = 242/472 (51%), Gaps = 52/472 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  I  +  DSR ++ G +FV + G   DGH F  +A+  GA AIV      +     
Sbjct: 19  FHDPDITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAERELDV----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
               + P+ +V N+++ LS+ +   YG+  + +  + +TGT+GK+S +  V +I +++G 
Sbjct: 74  ----SVPVTIVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAGK 129

Query: 143 SSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  IG T  I     +F   N  TTP  + L K    ++   V    +E SSH L   R
Sbjct: 130 RTGLIG-TMYIKIDEETFPVKN--TTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGR 186

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADD--- 250
           + G       FTNL +DH+DYH+T   Y  AK  LF +L      E P  AI+ ADD   
Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEAS 246

Query: 251 AYSKEV---------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           AY ++V         +K   +   + +    QG    L     + NK    I++      
Sbjct: 247 AYYEKVTAAHISTYGIKNDADVMAKHIKTTAQGTSFEL-----VTNKGTKPITIS----- 296

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+F VYN L A   CIA GI    V E +E+LH V GRFE V  N     I VD
Sbjct: 297 ----LVGQFNVYNVLAAVATCIAAGIPFETVAEAVEELHGVRGRFELVNKNQEFPVI-VD 351

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT +SLE +LK  + +T G++ VV GCGGDRD+ KRP M KIA+ LAD  I T DNPR
Sbjct: 352 YAHTPDSLENVLKTCKDMTEGKVFVVVGCGGDRDKTKRPKMAKIAVQLADEPIFTSDNPR 411

Query: 422 SEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           SEDP  I  ++  G+    +    NR +AI  AI    K DV+++AGKGHET
Sbjct: 412 SEDPLAILRDMEAGVENEYYHSIANREQAIFFAIANARKGDVVLIAGKGHET 463


>gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
 gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
          Length = 495

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 155/454 (34%), Positives = 242/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +           R  
Sbjct: 27  ISRLELDSRQIKSGETFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHVHGQVEFREG 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++  TGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVIYLTELGQHLSELAGRLYGGHQNQLIGATGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRV 267
           F+NL RDH+DYH T  AY  AK  LF E   +   AII  DDA   + +K+  H  G  +
Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AIINVDDAVGAQWVKQLPHAIGISL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L+     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 LAQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    +L  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKSALLATAPQLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
           FGCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 384 FGCGGDRDRGKRPMMAAIAEQYADRVILTDDNPRSESPQAIVADMLAGLTHPELAHIEH- 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NR +A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 NRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476


>gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
 gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
          Length = 488

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 261/486 (53%), Gaps = 43/486 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR + AG +FVAI G + DGH +I +AI QGA AIV       +D  + I   
Sbjct: 24  IDAIQFDSRIVGAGDVFVAIKGTQVDGHEYISKAIEQGAVAIVC------EDIPSDIHPQ 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +  DN+ K L + A+  +G HP     ++AVTGT+GK++  S + Q+    G   + 
Sbjct: 78  VTYVQTDNSAKALGVMAANYFG-HPSEKLKLIAVTGTNGKTTTVSLLHQLFMNLG---YH 133

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ +   +  +    TTP  + L   L  +   G   V +EASSH ++Q R+ G+
Sbjct: 134 TGMISTVQNQINNAVIPATHTTPDALQLNSLLKKMVDSGCNIVFMEASSHAIEQERMAGL 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           KL    FTN+  +H+DYH+T   Y  AK +LF++ LP ++ A++  DD       KR   
Sbjct: 194 KLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDD-LPSDAFALVNVDD-------KR--- 242

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALV 317
            G  +L      K+ +  K+ AI+  + ++ S++G +      D  F   G F  YN L 
Sbjct: 243 -GMVMLQNCKASKYTYSLKMMAIYKAKVLSNSIQGLELNIDQKDVWFRQIGYFNAYNLLA 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A      +  +S  VL +L ++ +  GRFE V  N+ G    VDYAHT ++LE +L+ I 
Sbjct: 302 AYATAHLLEEESEEVLMNLSQIELKNGRFEQVPNNA-GITAVVDYAHTPDALENVLQTID 360

Query: 378 TITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
              +G  +++ V GCGG+RD  KRP+M +IA   +D  I+T DNPR E+PE I A++  G
Sbjct: 361 NFRTGNEQVLTVVGCGGNRDTTKRPLMAEIACRFSDRVILTSDNPRFEEPEAIIADMQKG 420

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +P           +R EAI+ A     K D+++VAGKGHET   +  GE+    D +++R
Sbjct: 421 VPVSQVRKVTNLPDRKEAIKLACSFAQKGDIILVAGKGHETYQEI-KGERSHFDDKEVVR 479

Query: 491 EILGLI 496
           E+L LI
Sbjct: 480 EMLSLI 485


>gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
 gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
          Length = 486

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 178/501 (35%), Positives = 272/501 (54%), Gaps = 39/501 (7%)

Query: 15  INQL--SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +N+L  ++ P+Q     E+ I  ++ DSR I+   +FVAI G + DGH +I +AI  GA 
Sbjct: 3   LNELLKNVKPIQIIGDTEKNIIGINIDSRKIEKDHLFVAIKGTQTDGHKYIDKAIELGAC 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKS 127
           AI+V      +D    +  N   + V +T + +   A+  YG   H   ++ VTGT+GK+
Sbjct: 63  AILV------EDIPEKLSENITYIQVKSTEEAVGKVATTFYGDPSHKLKLVGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           +VA+ +  + ++ G    ++G  ST+ ++  D  +    TTP PI L   L+ +  +G  
Sbjct: 117 TVATLLYNMFRKFG---HKVGLLSTVCNYIDDKAVPASHTTPDPIELNILLAKMVEEGCE 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F++ L K++ 
Sbjct: 174 YAFMECSSHAIHQRRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKMFFDD-LGKDAF 232

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDF 302
           AI  ADD  +  +M +   A  +  S      F  HL + C     + + + V GK+   
Sbjct: 233 AITNADDK-NGMIMVQNCKATVKTYSTKRAADFKAHLLE-CHF---EGMYLEVNGKEVGV 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            F   G+F V N L   G  + +G     +L  L  L  V GR E + T+  G    +DY
Sbjct: 288 QF--IGKFNVSNLLAVYGAAVMLGKKPEDILVALSALKNVNGRLEPI-TSLDGITAIIDY 344

Query: 363 AHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           AHT ++LE +L  I  +  G+   II V G GG+RD+GKRP+M   A+  +D  I+T DN
Sbjct: 345 AHTPDALENVLLAIHEVLEGKGGHIITVCGAGGNRDKGKRPLMALEAVKKSDNVILTSDN 404

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           PR+EDP+ I  +++ G+    +K      NR EAIR A  M +K DV+++AGKGHET   
Sbjct: 405 PRNEDPQAIINDMLEGLDNTQKKKVLTIVNRKEAIRAACMMAHKGDVVLIAGKGHETYQE 464

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + NG K    D +++REI GL
Sbjct: 465 I-NGVKHHFDDHEVVREIFGL 484


>gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 490

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 246/459 (53%), Gaps = 25/459 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           ++++S  +Q  + F AI GN  DGH FI  AI +GA  + +    S+ D   T++   P 
Sbjct: 25  ITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITKGASTVFIQDT-SIID---TLKRKYPY 80

Query: 92  --ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             I+  +NTRK L+  +++ Y +  +   ++ +TGT+GK+SV++ + Q  + +G   +++
Sbjct: 81  INIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNGKTSVSNLLAQYYENAG---YKV 137

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI+    D  L    TTP P+   + L+ +  +G   V  E SSH   Q R+    
Sbjct: 138 GVIGTINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDVVVAEVSSHAAHQFRVYSTL 197

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAIIYADDAYSKEVMKRAH 261
              G FTNL +DH+DYH T + YF AK   F +  L   ++ A +  DD Y K +     
Sbjct: 198 FHGGIFTNLTQDHLDYHGTMENYFLAKREFFNQIQLFNDKAIASVNIDDPYGKRIY-NDF 256

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 ++ G++G+F  +K       +    I  +GK  +F   L G F VYN   +   
Sbjct: 257 KEKIDFITYGFEGEF-KIKDYNLSLFETLFNIEYKGKTLNFKTKLRGLFNVYNLSASISF 315

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            I  G D   + +    L  + GRFE V   ++   + +DYAHT ++LE ILK++  I  
Sbjct: 316 LIKDGFDIDFLKDKTLDLKPIRGRFEVV--EAKDFIVVIDYAHTPDALENILKSLNQIKQ 373

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PG 438
            R+I VFG GG+RD+ KRP+MGK+A D +DI I+T DNPR EDP +I  +I+ GI     
Sbjct: 374 NRVITVFGAGGNRDRTKRPLMGKVAQDFSDIVILTSDNPRFEDPNQIIKDILEGITQKSK 433

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I + +R +AI  AI+   K D++++AGKGHE   I+ +
Sbjct: 434 VIVEPDRKKAIEYAIKTAQKGDIVLIAGKGHENYQIIKD 472


>gi|303240798|ref|ZP_07327311.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
 gi|302591686|gb|EFL61421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
          Length = 484

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 180/495 (36%), Positives = 268/495 (54%), Gaps = 36/495 (7%)

Query: 13  ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           ELI  L I  +      ++N ++ DSR  ++G +FV + G K DGH FIPQAI  G  A+
Sbjct: 5   ELIKDLEIVDVTGDLNLEVNTIAYDSRKTRSGSLFVCVEGFKADGHKFIPQAIENGTRAL 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128
           +V     + +    IR       VD+TR  L+  A + +G HP    N++ VTGT GK++
Sbjct: 65  LVQREVEVPEGITVIR-------VDDTRYALASVADKFHG-HPSGDFNLVGVTGTKGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184
               ++ I +  G  +  IG   TIS+   D  L    TTP    L +    +  + V  
Sbjct: 117 TTYMIKSILEMYGQKTGLIG---TISNKIGDEVLPTDRTTPESYDLQELFGEMVEKQVNS 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH LD HR+   +   G FTNL RDH+D+H+T + Y  AK++LF+         
Sbjct: 174 VVMEVSSHALDLHRVSCSEFDIGVFTNLSRDHLDFHKTFENYLAAKIKLFKMC----KKG 229

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DF 302
           +I  D  Y ++V++   NA C V + G       ++ V  + +   V   V    F  D 
Sbjct: 230 LINVDSEYGRKVVE---NAECEVYTFGIDSS-ADIRAVDIVKHPDSVEFKVITPWFTGDI 285

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG+F VYNAL A G C  +GI    + + L+ +  VPGR E V T +    I +DY
Sbjct: 286 AVNIPGKFSVYNALGAIGSCALMGIPLEYIQKGLKNV-TVPGRAEVVQTGT-DYTIIIDY 343

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH+ +SLE IL  ++     R+I +FGCGGDRD+ KRPIMG+I+  LAD  ++T DNPR+
Sbjct: 344 AHSPDSLENILTTVKGYAPARVISLFGCGGDRDKTKRPIMGEISGKLADFTVITSDNPRT 403

Query: 423 EDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           E+P  I  +I  GI      +I   +R EAI+ A++    +D++V+AGKGHET +I+ N 
Sbjct: 404 EEPAAIINDIEEGIKKTTSAYITIVDRREAIKYAMQHAQPKDIIVLAGKGHET-YIMLND 462

Query: 479 EKKMSVDCDIIREIL 493
           +     + +++REIL
Sbjct: 463 KTIHFDEREVVREIL 477


>gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio cholerae]
          Length = 495

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 246/454 (54%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+ EDG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 27  ITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+  + E+     
Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 476


>gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 483

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 257/477 (53%), Gaps = 44/477 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E +   +  DSR I+ G IFVA+ G   DGH +I QA+  GA+ ++VS           
Sbjct: 18  KEEEYTGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSK---------K 68

Query: 86  IRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + +  P+  + + + RK L + AS  Y   P+  L + G +G +   +    I   S L 
Sbjct: 69  VEAAFPVKYIWIKDLRKKLGVLASNFYN-WPQKKLKIIGITGTNGKTTTTYLI--ESILG 125

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           S +     T+     D  +    TTP  + + K       +G+ ++ +E SSH LD  R+
Sbjct: 126 SNKTARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALDLGRV 185

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVM 257
           D ++     FTNL  DH+D+H+T + YF AK +LF  ++ K  E   +I  DD Y K + 
Sbjct: 186 DMLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFT-MMKKGCEKNCVINIDDLYGKRLS 244

Query: 258 KR-------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                     HN G RV     +G+ +         + Q+V + ++         + G +
Sbjct: 245 SEFGGISYGMHNEG-RV-----RGRIVEFHG-----DGQEVELHIDAFSTRTKLAILGRY 293

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            VYN L A  + + +GI+  +VLE +++L   PGR+E V    +   + VDY+HTS++LE
Sbjct: 294 NVYNVLGAISIALLLGIEKEIVLERIKELKGAPGRYELVNC-GQNFTVIVDYSHTSDALE 352

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            ILK+I  +  G++I VFGCGGDRD  KRP+MG+IA  L+DIAIVT DNPR+EDP KI  
Sbjct: 353 NILKSINELKKGKVITVFGCGGDRDASKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIVE 412

Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +++ G+ G   I + +R  AI  A+E+  ++D++++AGKGHET  I+  G KK+  D
Sbjct: 413 QVLEGMKGKNHIVEEDRDHAISKAVELAEEKDIILIAGKGHETYQIL--GRKKIHFD 467


>gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
 gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
          Length = 487

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 170/509 (33%), Positives = 266/509 (52%), Gaps = 48/509 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   E +   +   ++       E+  DSR +Q   +F+AI G + DGH +I +
Sbjct: 4   LKDILYKVHIEAVTGDTTIAVR-------ELVFDSRKVQLNDVFIAIKGYEVDGHSYIEK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI  GA A++       ++    I +    + VDN    L++ AS  YG   EN+  + V
Sbjct: 57  AIKAGAIAVIC------EEIPKNIINGITYVQVDNGSSALAVMASNYYGNPSENLKLIGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176
           TGT+GK+++A+ + Q+ +++G   +++G  ST+     D       TTP  + +   L  
Sbjct: 111 TGTNGKTTIATLLYQLFKKAG---YKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQK 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +GV +  +E SSHG+ Q R  G+    G FTNL  DH+DYH T   Y + K + F+E
Sbjct: 168 MNHEGVEYCFMEVSSHGIHQKRTAGLVFQGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDE 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPKE+  ++  DD     +M+                K+ +  K  A +  Q +   + 
Sbjct: 228 -LPKEAFCLVNIDDKNGLVMMQNTK-----------AKKYTYALKTYADYRAQILENRLA 275

Query: 297 G-----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           G      D +    L G F  YN L        +G++   +L  + +L  V GRFE+  +
Sbjct: 276 GLLLKINDNEVWTKLIGSFNAYNLLSIYATAELLGLEEIEILRLISELESVSGRFEYFIS 335

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL 409
            ++   I VDYAHT ++L+ +L+ I  I +G  ++I V GCGGDRD  KRP MG IA  L
Sbjct: 336 KNKITTI-VDYAHTPDALKNVLETINNIRTGNEQLITVVGCGGDRDTTKRPKMGNIASTL 394

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVV 464
           +  AI T DNPRSEDP  I   I  G+ P   +K     +R +AI+TA +M N+ D++++
Sbjct: 395 STKAIFTSDNPRSEDPMTIIEAIEKGVEPQNYKKTLSITDRKQAIKTACQMANENDIILI 454

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHET   + NG++    D  I +EIL
Sbjct: 455 AGKGHETYQEI-NGKRSDFDDYKIAKEIL 482


>gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
 gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
          Length = 485

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 173/500 (34%), Positives = 267/500 (53%), Gaps = 33/500 (6%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+  + +   Q   + +I  V+ DSR I+ G +F+A+ G + DGH FI +AI  GA 
Sbjct: 3   LSELLKNVKVIASQGNIDVEIKGVNIDSRKIKNGHLFIAMKGTQVDGHKFISKAIELGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           AI+      L+D    +      + V +T +     A+  YG+    +  + VTGT+GK+
Sbjct: 63  AIL------LEDMPEELNEKVTYVQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           ++A+ + ++ +  G    ++G  ST+ ++  D  +    TTP PI L   L+ +   G  
Sbjct: 117 TIATLLYRMFREFG---HKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCE 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK ++F + LPK + 
Sbjct: 174 YAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKTAF 232

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AI  ADD  +  +M +   A  +  S+     F    K+   H  + + + V+GK+    
Sbjct: 233 AITNADDK-NGMIMVQNTKATVKTYSIKRMADF--RAKILECHF-EGMYLEVDGKEVGVQ 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           F   G+F V N L   G  I +G     VL  +  L  V GR E +  +  G    VDYA
Sbjct: 289 F--IGKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPI-QSPEGYTAVVDYA 345

Query: 364 HTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           HT ++LE +L  I  +  G+   +I V G GG RD+GKRP+M + A+  +D  I+T DNP
Sbjct: 346 HTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNP 405

Query: 421 RSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R E+P+ I  +++ G+     K      +R EAIRTA  M  K DV++VAGKGHE    +
Sbjct: 406 RDEEPQAIIDDMLAGLDATQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKGHENYQEI 465

Query: 476 TNGEKKMSVDCDIIREILGL 495
            NG K    D ++IREI G+
Sbjct: 466 -NGVKHHFDDHEVIREIFGI 484


>gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei
           VT8]
 gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter aquaeolei VT8]
          Length = 494

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/483 (34%), Positives = 254/483 (52%), Gaps = 34/483 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ + +DSR ++ G  F+A+ G +     ++ QAI+ GA AI++ S    Q+     R  
Sbjct: 24  IHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISAGATAILLESE---QERQCHERHG 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG----- 141
             I+ V   R  L   A R + +HP     ++ VTGT+GK+SV  ++ Q+ + +G     
Sbjct: 81  ALIVPVVGLRARLGRIADRFF-EHPSRHLRVIGVTGTNGKTSVTQYISQLLRETGTPCGL 139

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L +   G   +I S       TTP  + + + L+ + ++G     +E SSH LDQ R+D 
Sbjct: 140 LGTLGYGMPGSIESATH----TTPDVVQVNRVLNRIRNEGGRAAVMEVSSHALDQGRVDN 195

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKR 259
           + +    FTNL RDH+DYH + +AY  AK RLF  EEL      ++I  DD + +++  +
Sbjct: 196 LTMTGAVFTNLTRDHLDYHGSMEAYGEAKARLFLREEL----HFSVINFDDPFGRQLYGQ 251

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                 RV    ++ +  + LK+     +  +  +  +  +FD   PL G F   N L A
Sbjct: 252 LEGQCDRVRYSLHEAQTELWLKEFTPTASGFRARVDGQWGEFDLTVPLLGSFNASNVLAA 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + +G+     +  + +L   PGR E   T S G  + VDYAHT ++L   L+ +R 
Sbjct: 312 LATVLTLGVPVERAVSVVRELSPPPGRLERF-TGSTGKHVVVDYAHTPDALANALEALRP 370

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            T GR+I VFGCGGDRD GKRP M K A   AD  IVTDDNPR+E PE+I ++I     G
Sbjct: 371 HTRGRLICVFGCGGDRDPGKRPEMAKEAEKRADYVIVTDDNPRTEQPERIVSDI---SAG 427

Query: 439 FIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           F + G      +R +AI  A+ M N+ D++++AGKGHE    +  G+K    D + +R +
Sbjct: 428 FTQAGRWQVIHDRAQAIAEALGMANEDDLVLIAGKGHEAYQEI-RGQKLPFSDAEQVRHL 486

Query: 493 LGL 495
           L L
Sbjct: 487 LNL 489


>gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile 630]
 gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile]
          Length = 484

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 248/491 (50%), Gaps = 43/491 (8%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL D+I   D   +  +L+I         IN V  DSR +  G +F+ I G   DGH +
Sbjct: 1   MKLNDIIQGLDIINVKGELNI--------DINNVQYDSRKVTKGTLFICIKGFVSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116
           I  AI +GA A +V            I+  T I V D TRK ++  A   Y  HP    N
Sbjct: 53  IKDAIEKGASAFIVEE-------DVAIKGCTFIKVKD-TRKDMAKVADNFYN-HPSQKFN 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+S+ + + +I     L+  ++G   TI  F  +  +    TTP  I L  
Sbjct: 104 VIGVTGTNGKTSITTILNEILT---LNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQY 160

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +   G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +
Sbjct: 161 HFNNMLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEK 220

Query: 233 LFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288
           LF          II  DD   K++ +  +  N  C    V  +  F+   +K      + 
Sbjct: 221 LF---FKTTMANIINIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSY 277

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +T S E   F    P+PG F VYN L     C  +GI   +  E L   + V GRFE 
Sbjct: 278 RLITPSYEEVIF---IPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFET 334

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  N +G  + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I   
Sbjct: 335 V-PNDKGISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQK 393

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVV 464
            +D+ I+T DNPR+E+PE I  +I+ GI    E      +R +AI  AI M  K DV+++
Sbjct: 394 YSDLCIITSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVII 453

Query: 465 AGKGHETVHIV 475
            GKGHET  I+
Sbjct: 454 TGKGHETYQII 464


>gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
 gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
          Length = 485

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 163/475 (34%), Positives = 249/475 (52%), Gaps = 42/475 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS           +
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------EVEM 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138
           + N   +++D+ R  L   AS  Y + P+    I+ VTGT+GK+S    V+++       
Sbjct: 71  KHNVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPIT 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G   ++IG       F   N  TTP  + L K       + + +V +E SSH L+  R
Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGR 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +      FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +  
Sbjct: 184 VEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDVNNSVINIDDEYGKRLYD 242

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                   ++S G  G  +  + +      I  K+QV            F L G+F +YN
Sbjct: 243 EFIVDNPEIISYGIDGGDLEGEYLDDGYIDIKYKEQVE--------KIKFALLGDFNLYN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++ 
Sbjct: 295 TLGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIV 353

Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             R I +  R+I +FGCGGDRD+ KRPIM K+A DL+DI I+T DNPR+E PE+I  ++ 
Sbjct: 354 AARNIKNVNRVITIFGCGGDRDRTKRPIMAKVAEDLSDIVILTSDNPRTESPEQIFDDVK 413

Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G      +  + +R +AI+ A+ M  K D++++ GKGHET HI+  G KK   D
Sbjct: 414 KGFIKSDDYFFEPDREKAIKVAVNMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
 gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
          Length = 485

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 173/500 (34%), Positives = 267/500 (53%), Gaps = 33/500 (6%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+  + +   Q   + +I  V+ DSR I+ G +F+A+ G + DGH FI +AI  GA 
Sbjct: 3   LSELLKNVKVIASQGNIDVEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFISKAIELGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           AI+      L+D    +      + V +T +     A+  YG+    +  + VTGT+GK+
Sbjct: 63  AIL------LEDMPEELNEKVTYIQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           ++A+ + ++ +  G    ++G  ST+ ++  D  +    TTP PI L   L+ +   G  
Sbjct: 117 TIATLLYRMFREFG---HKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCE 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK ++F + LPK + 
Sbjct: 174 YAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKTAF 232

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AI  ADD  +  +M +   A  +  S+     F    K+   H  + + + V+GK+    
Sbjct: 233 AITNADDK-NGMIMVQNTKATVKTYSIKRMADF--RAKILECHF-EGMYLEVDGKEVGVQ 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           F   G+F V N L   G  I +G     VL  +  L  V GR E +  +  G    VDYA
Sbjct: 289 F--IGKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPI-QSPEGYTAVVDYA 345

Query: 364 HTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           HT ++LE +L  I  +  G+   +I V G GG RD+GKRP+M + A+  +D  I+T DNP
Sbjct: 346 HTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNP 405

Query: 421 RSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R E+P+ I  +++ G+     K      +R EAIRTA  M  K DV++VAGKGHE    +
Sbjct: 406 RDEEPQAIIDDMLAGLDTTQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKGHENYQEI 465

Query: 476 TNGEKKMSVDCDIIREILGL 495
            NG K    D ++IREI G+
Sbjct: 466 -NGVKHHFDDHEVIREIFGI 484


>gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
 gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
          Length = 495

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/454 (34%), Positives = 241/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +           R  
Sbjct: 27  ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHAHGQVEFREG 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVIYLAELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRV 267
           F+NL RDH+DYH T  AY  AK  LF E   +   AII  DDA   + +K+  H  G  +
Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AIINVDDAVGAQWVKQLPHAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L      + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 LVQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    +L  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKSALLATAPQLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
           FGCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 384 FGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMLAGLTHPERAHIEH- 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NR  A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 NRFHAASYALQNAGAQDIILLAGKGHEDYQVLAN 476


>gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
 gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
          Length = 482

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 172/477 (36%), Positives = 256/477 (53%), Gaps = 32/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V  DSR ++ G +FVAI G + DGH +IP+AI  GA AI+   A          + N
Sbjct: 23  ITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIELGAAAILCEEA------PQQPQPN 76

Query: 90  TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               VV +T   +   A+R +G   KH + ++ VTGT+GK++VA+ +  + ++ G    +
Sbjct: 77  VTYAVVKSTEDEVGKVATRFFGDPSKHLK-LVGVTGTNGKTTVATLLYNLFRKLG---HK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ +F +   +    TTP PI L + L+ + + G  +V +E SSH + Q R+ G+
Sbjct: 133 CGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCEYVFMECSSHAIAQKRIGGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G FTNL RDH+DYH+T + Y NAK   F+  LPK + AI  ADD   K  M    N
Sbjct: 193 TFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDG-LPKSAFAITNADD---KNGMVMVQN 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V +   Q       ++   H  Q + ++++G++    F   G+F V N L   G  
Sbjct: 249 TKASVKTYSIQSMADFKARIIECHF-QGMYLAIDGQEVGVQF--TGKFNVSNLLAVYGAA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381
             +G      L  +  LH V GR + +  +  G    VDYAHT ++L+ +L  I  +   
Sbjct: 306 RMLGKQREETLIAMSTLHTVNGRMDTL-QSPEGFTAIVDYAHTPDALKNVLLAIHEVDGK 364

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           G II V G GG+RD+GKRP+M K A+ L+D  I+T DNPR EDP+ I  +++ G+    +
Sbjct: 365 GHIITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEDPQDIINDMLAGLDAQDQ 424

Query: 442 K-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           K      +R EAIRTA  +  KQDV++VAGKGHET   +  G K    D +++R+I 
Sbjct: 425 KKVLTIADRKEAIRTACMLAQKQDVILVAGKGHETYQEI-KGVKHHFDDKEVLRDIF 480


>gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
 gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
          Length = 499

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA A++  +           R  
Sbjct: 31  ITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQVEYREA 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 91  VPVMYLSELDQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 210

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 269 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 387

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 446

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 447 HRFQAASYALKHAGAQDIILLAGKGHEDYQVLAN 480


>gi|222474927|ref|YP_002563342.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
 gi|255002901|ref|ZP_05277865.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Puerto Rico]
 gi|222419063|gb|ACM49086.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
          Length = 472

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 244/448 (54%), Gaps = 24/448 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR ++ G+IFV +    E    F+P A+  GA+ IV  +A  L         ++ I
Sbjct: 17  ITADSRSVKPGFIFVCL---SEAAKGFVPDAVKAGAKFIVAGNAGGLPHVD-----HSQI 68

Query: 93  LVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++           AS  Y G  PE +  VTGT+GK+SVA F +QI   +G +   +G   
Sbjct: 69  IICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGTLG 128

Query: 152 TI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            I   ++       TTP  + L K LS L    V ++ +EASSHG+ Q RL G+K    +
Sbjct: 129 AIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASTAA 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL  DH+DYH + + Y+  K +LF E+L +E  A++ AD    +E+ + A  AG  ++
Sbjct: 189 FTNLSGDHLDYHGSMEKYWATKQKLFSEVLSREGCAVLNADSEQYEELRELA--AGRNII 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G     + L ++        +T+ + G+  +D  FP+ G+FQ+ N L A  +  A G 
Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAIVAASGS 306

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386
               V   +++L    GR E +G      RI +DYAHTS++L+  L +++      + ++
Sbjct: 307 GHRDV--PIDRLASPRGRMELIGD-----RIIIDYAHTSDALKHALTSLKWHGFPQKTVL 359

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPRSE+PE IR EI+      IE  +R 
Sbjct: 360 VFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDRG 419

Query: 447 EAIRTAIEMLNKQD-VLVVAGKGHETVH 473
           +AI  A+    + + VL++AGKGHET  
Sbjct: 420 DAIHYAVNFAIRNNYVLLIAGKGHETTQ 447


>gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
          Length = 490

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 167/507 (32%), Positives = 270/507 (53%), Gaps = 43/507 (8%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  ELI+ L +  +    + +I+ + SDSR ++ G++FVA+ G   DGH +I  AI +GA
Sbjct: 2   ELKELIHPLEVLEVVGNADVEISGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIEKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
            AIV      L D +  +  + P+ + V ++   L    S  Y    +N++   VTGT+G
Sbjct: 62  AAIVCEEIPVLPDENMQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181
           K+++A+ + ++ ++ G    ++G  ST+ ++     +    TTP P+ L   ++ +   G
Sbjct: 122 KTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVDAG 178

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++ LP  
Sbjct: 179 CEYAFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPAS 237

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLS------VGYQGKFI--HLKKVCAIHNKQQVTI 293
           + A+  ADD   K  +    N   + L+        ++GK +  H +    + N ++V  
Sbjct: 238 AFALTNADD---KSGLVMLQNTAAKKLTYSLRTLADFKGKILESHFEGTEMLVNGREV-- 292

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +    G F  YN L   G  +++G D   VL  L  LH V GRF+ +  + 
Sbjct: 293 ---------MTRFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTI-QSP 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G    VDYAHT ++L  +L  I  +   +GR+I V GCGG+RD+GKRPIM K A  L+D
Sbjct: 343 LGYTAIVDYAHTPDALTNVLSGIHEVLDGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSD 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR E+P++I  +++ G+    +E+     +R +AI+TA  +  K DV++VAG
Sbjct: 403 QLILTSDNPRFEEPDEIIKDMVAGLNAADMERTLCITDRAQAIKTATMLARKGDVILVAG 462

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE    V  G K    D + ++EI 
Sbjct: 463 KGHEDYQEV-KGVKHHFDDREQLKEIF 488


>gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
 gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
          Length = 481

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/472 (33%), Positives = 255/472 (54%), Gaps = 38/472 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++  DSR I+   +F A++G   DGH +I +A+  GA+ ++       +D +   +  
Sbjct: 21  IGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAVNSGAKMVIAEK----KDITVADKDV 76

Query: 90  TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           T I V DN RK L + AS  +G  +    I+ +TGT+GK++ +  +  + + +     +I
Sbjct: 77  TYIFV-DNLRKHLGVIASNFFGWPQKKLKIIGITGTNGKTTSSYILDSMLENTS----RI 131

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI     D  +    TTP  + L K L     +GV +  +E SSH L+  R+D ++
Sbjct: 132 G---TIGYKILDEEIEAPNTTPESLDLVKMLDKSLKKGVEYFIMEVSSHALEIGRVDMLE 188

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261
             +  FTNL +DH+DYH+  + YFNAK +LF  L  K++ A+   DD+Y + +    +++
Sbjct: 189 FDSVMFTNLTQDHLDYHENMENYFNAKFKLFSMLRNKDAAAV-NIDDSYGERIYNSNKSY 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +     +GK      +   HN   + ++  +G ++ F   L G++ +YN L   G
Sbjct: 248 KSYSIIKDSDLKGK------IEEYHNGGMKASVIFQGAEYFFDTKLVGDYNLYNLLGCIG 301

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + + +G D   ++E ++++  VPGRFE V    +  R+ VDYAHT N LE IL+ +R IT
Sbjct: 302 VLLNLGFDIRDIIERVKRVGYVPGRFELV-NEGQDFRVIVDYAHTDNGLENILETVRKIT 360

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
             R+I +FG GGDRD  KRP M + A   +D  I+T DNPR+EDP +I  ++  G+    
Sbjct: 361 EKRVITIFGAGGDRDNTKRPKMARAAAKYSDFVIITSDNPRTEDPAEITRQVEKGLTDID 420

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                +    +R +AIR  IEM +  D L++AGKGHE   I+  G +K+  D
Sbjct: 421 FPKDKYTVIVDREQAIRYGIEMSDANDSLLIAGKGHEDYQIL--GREKIHFD 470


>gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
 gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
          Length = 485

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/470 (34%), Positives = 247/470 (52%), Gaps = 34/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           RK + +  DSR ++  +IFVA+ G   DGH +I  A+  GA  I+VS           ++
Sbjct: 19  RKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSR-------KVEMK 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----QR 139
                +++D  R  L   AS  Y + P+    I+ VTGT+GK+S    ++++       R
Sbjct: 72  HKVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G   ++IG       F   N  TTP  + L K       + + +V +E SSH L+  R+
Sbjct: 131 IGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRV 184

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +      FTNL +DH+DYH T + YF AK +LF +L    + ++   DD Y K +   
Sbjct: 185 DVLDFDYALFTNLTQDHLDYHVTMENYFQAKRKLFLKL-KDINNSVFNIDDKYGKRLYDE 243

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  ++S G  G  +  + +    +   + I  +GK     F L G+F +YN L A 
Sbjct: 244 FIEDNPEIISYGIDGGDLEGEYL----DDGYIDIKFKGKVEKVKFALLGDFNLYNTLGAV 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + I +GI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I
Sbjct: 300 AIAIKMGISWEDILKRVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNI 358

Query: 380 TSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
            +G RII +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I A++  G   
Sbjct: 359 RNGNRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFADVKIGFTK 418

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              +  + +R +AI+ AI M  K D++++ GKGHET HI+  G KK   D
Sbjct: 419 NDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-63q42]
 gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile ATCC 43255]
          Length = 484

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 248/491 (50%), Gaps = 43/491 (8%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL D+I   D   +  +L+I         IN V  DSR +  G +F+ I G   DGH +
Sbjct: 1   MKLNDIIQGLDIINVKGELNI--------DINNVQYDSRKVTKGTLFICIKGFVSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116
           I  AI +GA A +V            I+  T I V D TRK ++  A   Y  HP    N
Sbjct: 53  IKDAIEKGASAFLVEE-------DVEIKGCTFIKVKD-TRKDMAKVADNFYN-HPSQKFN 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+S+ + + +I     L+  ++G   TI  F  +  +    TTP  I L  
Sbjct: 104 VIGVTGTNGKTSITTILNEILT---LNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQY 160

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +   G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +
Sbjct: 161 HFNNMLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEK 220

Query: 233 LFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288
           LF          II  DD   K++ +  +  N  C    V  +  F+   +K      + 
Sbjct: 221 LF---FKTTMANIINIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSY 277

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +T S E   F    P+PG F VYN L     C  +GI   +  E L   + V GRFE 
Sbjct: 278 RLITPSYEEVIF---IPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFET 334

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  N +G  + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I   
Sbjct: 335 V-PNDKGISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQK 393

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVV 464
            +D+ I+T DNPR+E+PE I  +I+ GI    E      +R +AI  AI M  K DV+++
Sbjct: 394 YSDLCIITSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVII 453

Query: 465 AGKGHETVHIV 475
            GKGHET  I+
Sbjct: 454 TGKGHETYQII 464


>gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
 gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
          Length = 529

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 169/504 (33%), Positives = 254/504 (50%), Gaps = 43/504 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+    PE +   +       + +I  +   S  ++ G +FVAI G+  DGH FI
Sbjct: 1   MRLSELLLPVCPESVRSTAAARGVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            QA+A+GA A+V       +D + T+R       V + R  L+L ++  YG     ++  
Sbjct: 61  DQALARGAVAVVAEKEVDARD-AVTVR-------VADARNALALLSAVFYGAPSARLVLV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSY 176
            VTGT+GK++ A+ V+ I  ++G     IG T       +   N LTTP    L   L  
Sbjct: 113 GVTGTNGKTTTAALVEHILVKAGKQVGVIG-TGNFRYVGRRFKNPLTTPESADLQHILRD 171

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +++ GVTHV +E SSH L Q R+ G       FTNL +DH+D+H   + Y+  K RLF  
Sbjct: 172 MATAGVTHVVMEVSSHALAQQRVAGCAFDVAIFTNLTQDHLDFHGDMETYWECKKRLFTG 231

Query: 237 -----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
                +  K   ++I  +DA  + +       G   +  G+ +   I+ K V +  +   
Sbjct: 232 TRSVGVREKHMVSVINCNDARGRGLFDTLPVPG--RMGAGFAEACDIYPKGVTSSPDGLA 289

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            TI        F  PL G + + N L AAG  + +G++ A + E +E    VPGR E V 
Sbjct: 290 GTIVTPAGPIPFCSPLAGTYNLENILCAAGAGVVLGVEGAAIQEGIETFAGVPGRLEKVA 349

Query: 351 TNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              R GR ++VDYAHT ++L+ +L  +R I++GR+  VFGCGGDRD+ KRP MG IA  +
Sbjct: 350 --DRMGRFVFVDYAHTPDALQNVLSALRKISAGRLFCVFGCGGDRDRAKRPKMGGIAATI 407

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIE-------- 454
           AD  +VT DNPRSEDPE I A+I+ G+ G  E+   +  +       R  +E        
Sbjct: 408 ADRVVVTSDNPRSEDPEAIIADIVKGMTGLAERVADVAGLAGKSSNGRYLVEPDRRLAIR 467

Query: 455 ----MLNKQDVLVVAGKGHETVHI 474
                    D +++AGKG E   I
Sbjct: 468 AAVSAAAPGDTILIAGKGEENYQI 491


>gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 507

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 254/486 (52%), Gaps = 63/486 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +Q G +F A+ G   DGH FI  A+A+GA A+V+ S ++L          T ILV 
Sbjct: 29  DSRRVQPGGLFFALRGASVDGHRFIEDALARGAVAVVMESPHTLP------TGVTGILVK 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           D  R+ ++L A+  +G   +++L V  TGT+GK++V+  V+ I   +G     +G     
Sbjct: 83  DG-RRAMALAAAAYFGDPSKDMLVVGITGTNGKTTVSYLVESILLAAGYRPAVLGTVDYR 141

Query: 154 SSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
              A   +  TTP  + L + ++    +G   + +E SSH L+Q R+DG+    G FTNL
Sbjct: 142 FEGAHLPSSHTTPESVDLMETIADFRGRGADALVLEVSSHSLEQRRVDGVWFDVGVFTNL 201

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKE-------VMKRAHNAG 264
             +H+DYH   + YF AK+RLF  L  +    ++  +DD++          V++  H + 
Sbjct: 202 TPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVVANSDDSWGARLGAMLPAVIRCGHASE 261

Query: 265 CRVLS-------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           C V +        G  G     +   A+ +                 PL G++ + N L 
Sbjct: 262 CDVTADDVTISVAGIAGSLRTARGTAALQS-----------------PLVGDYNLQNLLC 304

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           AAG+  A+ +  A + + L +   VPGR E +  N RG  + VDYAHT ++LE +L  +R
Sbjct: 305 AAGVGAALDMVPATIAKALAQAPQVPGRLESI-ANERGALVLVDYAHTGDALENVLVTLR 363

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI----- 432
            +   R++ VFGCGGDRD GKRP+MG+IA  LAD+AI+T DNPRSEDP  I  ++     
Sbjct: 364 QLQPRRLLCVFGCGGDRDAGKRPVMGEIAARLADVAILTSDNPRSEDPLAIMQQVESGLR 423

Query: 433 -IHGIP------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            IH  P            G++   +R EAI  A+ +L   DVL+VAGKGHE   I+  G 
Sbjct: 424 RIHEEPWSLQQARQAAGRGYLSLSDRREAICFAVSLLQPDDVLLVAGKGHEDYQII--GR 481

Query: 480 KKMSVD 485
           +++  D
Sbjct: 482 QRLHFD 487


>gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-23m63]
 gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
 gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
          Length = 484

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 247/491 (50%), Gaps = 43/491 (8%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL D+I   D   +  +L+I         IN V  DSR +  G +F+ I G   DGH +
Sbjct: 1   MKLNDIIQGLDIINVKGELNI--------DINNVQYDSRKVTKGTLFICIKGFVSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116
           I  AI +GA A +V            I+  T I V D TRK ++  A   Y  HP    N
Sbjct: 53  IKDAIEKGASAFLVEE-------DVEIKGCTFIKVKD-TRKDMAKVADNFYN-HPSQKFN 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+S+ + + +I     L+  ++G   TI  F  +  +    TTP  I L  
Sbjct: 104 VIGVTGTNGKTSITTILNEILT---LNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQY 160

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +   G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +
Sbjct: 161 HFNNMLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEK 220

Query: 233 LFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288
           LF          II  DD   K++ +  +  N  C    V     F+   +K      + 
Sbjct: 221 LF---FKTTMANIINIDDEGGKKIYENIKGINVPCYTYGVDTNADFMARDIKSDSDGVSY 277

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +T S E   F    P+PG F VYN L     C  +GI   +  E L   + V GRFE 
Sbjct: 278 RLITPSYEEVIF---IPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFET 334

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  N +G  + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I   
Sbjct: 335 V-PNDKGISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQK 393

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVV 464
            +D+ I+T DNPR+E+PE I  +I+ GI    E      +R +AI  AI M  K DV+++
Sbjct: 394 YSDLCIITSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAISEAISMAKKDDVVII 453

Query: 465 AGKGHETVHIV 475
            GKGHET  I+
Sbjct: 454 TGKGHETYQII 464


>gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 499

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 173/488 (35%), Positives = 251/488 (51%), Gaps = 28/488 (5%)

Query: 10  DFPELINQLSIF---PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +F +LIN L++    P+   +  +  ++ DSR  Q G++FVAI G   DGH F+P A+ +
Sbjct: 2   NFRDLINHLNVLEHSPVL--DVPVTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTR 59

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+++     + +  A         VV +TRK L+L ASR YG+ P   L + G +G 
Sbjct: 60  GAAAVLLQQKVPVPEGVAWA-------VVPDTRKGLALAASRFYGE-PGRALRLVGVTGT 111

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGV 182
           +   +    I          +G   TI +   D     R TTP  + L + L  ++  GV
Sbjct: 112 NGKTTTTHLIAALFRARRPGVGLIGTIHNLIGDEVVPVRHTTPESLDLQRLLRRMADAGV 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T V +E SSH L   R+ G+   A  FTNL +DH+D+H   + YF AK +LF  L  +E+
Sbjct: 172 TDVVLEVSSHALRLSRVHGLSFEAAVFTNLTQDHLDFHTDFEDYFAAKAQLFTGL-GEEA 230

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AII  DD Y   ++      GCR+    +Q   +    V  +    +  +  E      
Sbjct: 231 AAIINRDDPYGVRLLDLTR--GCRITYAVHQAADVRAAGVRPVPGGVEFLLESEWGSAPV 288

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F VYNAL AA + +  G     +   L ++  VPGRFE V    +   + +DY
Sbjct: 289 ALRLSGLFNVYNALAAACVGLVRGFTPEEIAGVLGRVRGVPGRFERV-DQGQEYTVIIDY 347

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + LE +L+  R I  GR+I VFGCGGDRD+ KRP+MG I+   AD +++T DNPR+
Sbjct: 348 AHTPDGLENLLRAAREIAPGRLISVFGCGGDRDRTKRPLMGAISARGADYSVLTSDNPRT 407

Query: 423 EDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           EDP  I  +I  G       G+    +R EAIR A E     DV+++AGKGHE   I+  
Sbjct: 408 EDPLAIIMDIEEGYRRVRPDGYAVVPDRREAIRHAFERARPGDVVIIAGKGHEDYQII-- 465

Query: 478 GEKKMSVD 485
           G K++  D
Sbjct: 466 GTKRLKFD 473


>gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
 gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
          Length = 495

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R  
Sbjct: 27  ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRV 267
           F+NL RDH+DYH T  AY  AK  LF E   +   AII  DDA   +  K+  H  G  +
Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AIINVDDAVGAQWGKQLPHAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L+     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 LAQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    +L  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKSALLATAPQLRPVLGRMELFQREHKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
           FGCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 384 FGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMLVGLTHPERAHIEH- 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NR +A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 NRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476


>gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
 gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
          Length = 520

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 171/481 (35%), Positives = 257/481 (53%), Gaps = 32/481 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I+ G +FVA+ G + DGH FI +A+AQGA A++      L+D  A +  
Sbjct: 58  EIKGVNIDSRRIEDGHLFVAMRGTQVDGHRFIGKAVAQGAVAVL------LEDMPAVMDE 111

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V +T +     A+  YG       ++ VTGT+GK++VA+ +  + ++ G   ++
Sbjct: 112 KVTYVQVASTEEDAGKVATVFYGNPSRRLKLVGVTGTNGKTTVATLLYNMFRKFG---YK 168

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ ++  D  +    TTP PI L   LS +   G  +  +E SSH + Q R+ G+
Sbjct: 169 TGLLSTVCNYIDDKEVPADHTTPDPIELNCLLSRMVDAGCEYAFMECSSHAIHQRRISGL 228

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G FTNL RDH+DYH+T + Y NAK ++F + LPK + A+  ADD  +   M +   
Sbjct: 229 EFAGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKNAFALTNADDK-NGLFMVQNTK 286

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  +  S+     F    K+   H  + + + +EGK+    F   G+F V N L   G  
Sbjct: 287 AAVKTYSIKRMADF--RAKILECHF-EGMYLEIEGKEVGVQF--IGKFNVSNLLAVYGAA 341

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--- 379
           I +G     +L  +  L  V GR E +  +  G    VDYAHT ++L  +L  I  +   
Sbjct: 342 ILLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFTAVVDYAHTPDALANVLAAIHDVLDT 400

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G +I V G GG RD+GKRP+M + A+  +D  I+T DNPR EDP+ I  +++ G+   
Sbjct: 401 KGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEDPQAIIDDMLSGLDAA 460

Query: 440 IEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             K      +R EAIRTA  M  K DV++VAGKGHE    + NG K    D ++IREI G
Sbjct: 461 QRKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGHENYQEI-NGVKHHFDDHEVIREIFG 519

Query: 495 L 495
           +
Sbjct: 520 I 520


>gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 482

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 165/480 (34%), Positives = 256/480 (53%), Gaps = 25/480 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+K   +  DSR ++ G +FVA+ G+  DG LFIP A+++GA  IV        +     
Sbjct: 14  EKKHMLICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGAAYIVCR-----HNEVEYC 68

Query: 87  RSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            S  PI VVD+ R  L   A   Y  G     I+ VTGT+GK+++   ++ + +  G  +
Sbjct: 69  GSAIPI-VVDDPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLEYLFRAKGNRT 127

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG  +     F+++  LTTP  + L   L+ +       V +E SSH LDQ R+ GI 
Sbjct: 128 GVIGTIAYRWPGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRRIAGIS 187

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+DYH+  + YF+AK RLF E   K    +   D+ + +++ K     
Sbjct: 188 FKGVIFTNLTQDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQWGRKLAKLVPE- 246

Query: 264 GCRVLSVGYQGK------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              ++  G++ K      ++  K + +      + +S + K ++   PL G     N L 
Sbjct: 247 ---IIGFGFKNKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNAENLLA 303

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              + + +G+ +       EK   VPGR E +  N +   I+VDYAHT ++L  +L  +R
Sbjct: 304 VQAISLQLGL-APEDFCCFEKFTGVPGRLERI-VNKKQLDIFVDYAHTPDALINVLSALR 361

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +   RII VFGCGG+RD+ KRP+MGK    L+D+A++T DNPR+EDPE I A+++ G+ 
Sbjct: 362 DVGFKRIITVFGCGGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPELIMADVLPGLK 421

Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                I + +R +AIR AIE+++  D L+VAGKGHE    +   +   S D  +IR+ILG
Sbjct: 422 KAKQIITEPDREKAIRQAIELVSPGDALLVAGKGHECTQQIGFMKYPFS-DQSVIRKILG 480


>gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
 gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
          Length = 487

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 257/468 (54%), Gaps = 29/468 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+++  DSR I+   +F+AI G   DGH +I +A+ +GA A++V     L+ + + I   
Sbjct: 23  ISDLQYDSRKIKNNDLFIAIKGFNVDGHDYIKEAVEKGATAVIVEK--KLKKYLSGI--- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V+NTRK +++ A   +     +I  + +TGT+GK++ A  +  I +++   +   
Sbjct: 78  -TYIEVENTRKEMAVLAKNFFANPLADIDLIGITGTNGKTTTAYLIYNILRKNSFKTAMF 136

Query: 148 GPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    I +  +     TTP  + L +  S   + GV ++ +E SSH LD +R+  +    
Sbjct: 137 GTIKNIIAGEEISATRTTPESLDLYRYFSQAKTAGVQYIVMEVSSHALDLYRVHQMDFSL 196

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAG 264
             FTNL  +H+DYH+   +Y  AK +LF +L P ++ A+I  DD  S  ++++  AHN  
Sbjct: 197 AVFTNLSPEHLDYHKDLASYRQAKSKLFSQLSP-DASAVINLDDKNSGFMLEKSKAHNFK 255

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGL 321
               S+  Q   ++    C  +  +Q +++ + +     +F   L G F +YN+L A   
Sbjct: 256 ---YSLSNQNADLY----CQNYKLKQNSLNYQSQGLIKRNFQLKLGGIFNIYNSLAAVLS 308

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +GI +  ++  LE++  VPGRFE +    +  ++ VDYAHT + +E +L+  + IT 
Sbjct: 309 VFLLGISADKIVNSLEEIKGVPGRFELINA-GQDFQLIVDYAHTPDGMENVLEAAKEITK 367

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            R+IV+FGCGGDRD+ KRP+M K+A D AD   +T+DNPRSEDPE I +EI  G      
Sbjct: 368 NRLIVLFGCGGDRDRSKRPVMAKLAEDNADYVFLTNDNPRSEDPEFILSEIKSGFSNSFS 427

Query: 442 K----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                 +R +AI  AI    K D++++ G+GHE   ++   +KK+ +D
Sbjct: 428 NYEVISDRKKAIVEAINFAKKDDIILILGRGHEKYQVIK--DKKIELD 473


>gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
 gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
          Length = 488

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 170/486 (34%), Positives = 254/486 (52%), Gaps = 27/486 (5%)

Query: 24  QWRERK-----INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +W E       ++ +S DSR +  G +FVA  G K  G  FI  A+A GA A+++ S+  
Sbjct: 14  EWAEPTHSGIAVSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVADGAVAVLIDSS-- 71

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ 135
             + S     + P++ + +    +   A+R Y + P     ++ +TGT+GK+S A FV Q
Sbjct: 72  --ELSDCPNVDVPVIGISDLVSEIGPVAARFY-EQPSRAMTVVGITGTNGKTSCAHFVAQ 128

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                G+ +  +G          +    TTP  I L K  + L + G   V +E SSH L
Sbjct: 129 AMNNIGVKTAIVGTVGNGFPGLLEKATHTTPDAIGLQKLFAELKAAGAEAVVMEVSSHAL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q R+  +    G FTNL RDH+DYH + +AY  AK RLF+E   K   A+I  DD++ +
Sbjct: 189 EQGRVAAVDFDYGLFTNLSRDHLDYHGSMEAYGEAKARLFKEFNLK--AALINGDDSFGR 246

Query: 255 EVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +++ R  +   R +SVG   G++       A+H  +   +     +F F   + GEF + 
Sbjct: 247 KLL-RDESIEARKVSVGRLFGQYHFAAYRLALHGIE-AELKTPAGNFAFASKIIGEFNLD 304

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+ A L    G   A V+E L +L  VPGR + V    +   + +DYAHT ++LE  L
Sbjct: 305 NLLLVAALLSEQGFSKAQVMESLSQLDSVPGRMQAVVAADKP-LVIIDYAHTPDALEKAL 363

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R  T+G +  VFGCGGDRD GKR +MG+IA  LAD  +VT DNPR+E PE+I   I 
Sbjct: 364 SAVRAHTTGTLWCVFGCGGDRDAGKRELMGRIADQLADHLVVTSDNPRTESPERIIEMIE 423

Query: 434 HGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            GI    P    + +R  AIR AI   + +DV+++AGKGHE    V       S D ++ 
Sbjct: 424 QGICQHEPAI--EADRAAAIRLAIMQASPEDVVLIAGKGHEDYQEVGTKRYPFS-DLEVS 480

Query: 490 REILGL 495
             +LG+
Sbjct: 481 MRLLGV 486


>gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 495

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 170/483 (35%), Positives = 251/483 (51%), Gaps = 20/483 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVAIVG+  DG  +IPQAIAQG  A++  +    +D +   
Sbjct: 19  ERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAVIAEADGEAEDGTIRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
               P++ +    + LS  A R Y +   ++  + VTGT+GK+++   + Q  Q  G +S
Sbjct: 79  SHGIPVIYLSQLNQRLSALAGRFYHQPGADLRLIGVTGTNGKTTITQLLAQWGQLLGETS 138

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +      +  TT S + +   L  L SQG T  ++E SSHGL Q R+  + 
Sbjct: 139 AVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAAMEVSSHGLVQDRVAALP 198

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A +FTNL RDH+DYH   + Y  AK  LF      E   II ADD   +  + ++ +A
Sbjct: 199 FAASAFTNLSRDHLDYHGDMEHYEQAKWLLFSTHHSGEK--IINADDEVGQRWLAKSPDA 256

Query: 264 GC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + L   + G+++   +V    +   ++             L G F V N LVAA
Sbjct: 257 VAVTMEQRLPENWAGRWVSASQVDYHDSGASISFDSSWGKGVLESRLMGAFNVSNLLVAA 316

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +A+G    ++ +   +L  V GR E V T      + VDYAHT ++LE  L+  R  
Sbjct: 317 ATMLALGYPLDVLCKTSSQLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALEAARLH 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G++  VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPRSE+P  I A+I++G+   
Sbjct: 376 CKGQLWCVFGCGGDRDKGKRPLMGGIAEQYADRVVVTDDNPRSEEPRAIMADILNGM--- 432

Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++ G+      R EA+  AI      DV++VAGKGHE   +V N     S    + R +L
Sbjct: 433 LDAGHAQAISGRAEAVTGAIMQAKPDDVILVAGKGHEDYQLVGNRRLDYSDRVTVAR-LL 491

Query: 494 GLI 496
           G+I
Sbjct: 492 GVI 494


>gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 485

 Score =  250 bits (638), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 248/471 (52%), Gaps = 34/471 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS           +
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------KVEM 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138
           + N   +++D+ R  L   AS  Y + P+    I+ VTGT+GK+S    ++++       
Sbjct: 71  KHNVSYILIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPIT 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G   ++IG       F   N  TTP  + L K       + + +V +E SSH L+  R
Sbjct: 130 RIGTIEYKIGD----KVFEAVN--TTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGR 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +      FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +  
Sbjct: 184 VEVLDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDINNSVINVDDEYGKRLYD 242

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   ++S G +   +         +   + +  + +     F L G+F +YN L A
Sbjct: 243 EFIVDNPEIISYGIENGDLE----GDYSDDGYIDVKYKNQIEKVKFSLLGDFNLYNTLGA 298

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R 
Sbjct: 299 IGIALKIGISMEEILKRVSNIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARN 357

Query: 379 ITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
           I +G RII +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I  ++  G  
Sbjct: 358 IKNGSRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGFI 417

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               +  + +R +AI+ AI M  K D++++ GKGHET HI+  G KK   D
Sbjct: 418 KSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 488

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 257/475 (54%), Gaps = 36/475 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR+ + G +FVAI G K DG  +I  A+ +GA AIVV    S       I  +  +
Sbjct: 26  ICYDSRNSKEGSLFVAIKGFKFDGADYINDAVERGAVAIVVEREVS-------IDKDITV 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + V+N RK L+  AS  YG   + +  + VTGT+GK+SV   ++ I +     + ++G  
Sbjct: 79  IKVENARKSLAKIASNYYGDPSKQLFMIGVTGTNGKTSVTYMIKSILESQ---NNKVGLI 135

Query: 151 STISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            TI +   D       TTP  + L + L  +  +GV +V +E SSH L  +R+D  K   
Sbjct: 136 GTIHNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVDECKFDI 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+D+H+T   Y NAK +LF      ++  +I  DD YS  ++    N+  +
Sbjct: 196 AVFTNLTQDHLDFHKTMDEYANAKAKLFR---MAKTACVINIDDDYSSYMI---ENSNAK 249

Query: 267 VLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V++ G +   +I  K +       + T+ +E    +    +PG F VYN+L A  +   +
Sbjct: 250 VVTYGIKDYAYIMAKDIKNDIKGAKFTVQIEDIKSEIALKIPGLFSVYNSLAAISVAFIL 309

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    V   L+ + +  GRFE +  +     + +DYAHT + LE ++K      +G+ I
Sbjct: 310 GIPLQSVKMALKDVKI-KGRFEVLDLDVPYN-VVIDYAHTPDGLENLMKAFGEYNTGKKI 367

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------F 439
           ++FGCGGDRD+GKRP MG++A   AD  I+T DNPRSE+P KI  EI  GI         
Sbjct: 368 LLFGCGGDRDKGKRPKMGEVAGKYADFVIITSDNPRSEEPIKIIQEIEEGIKNTKCPYTI 427

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
           IE  +R EAI+ A+ +    DV+++AGKGHET  ++   +K +  D  DI+R+IL
Sbjct: 428 IE--DRKEAIKYALSIAKDNDVVILAGKGHETYQVLK--DKVIDFDERDIVRDIL 478


>gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
 gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
          Length = 457

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 255/475 (53%), Gaps = 31/475 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ +S+ +  G+IFVAI G   DGH F+ +A+ +GA  + V     ++D       
Sbjct: 2   EVKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKDVGIED------- 54

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I+ V +TRK L       YG+  E   ++ VTGT+GK++    ++ + + +G+   +
Sbjct: 55  -PRIVKVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGI---K 110

Query: 147 IGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +G   TI     D        TTP P+     L  +   G   V  E SSH L Q R+ G
Sbjct: 111 VGLIGTIYYRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWG 170

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            K     FTNL +DH+DYH   + YF+AK+ LF +  P+E  ++I ADD Y K ++    
Sbjct: 171 TKFFTTIFTNLSQDHLDYHGDMENYFSAKLLLFTQY-PQEF-SVINADDPYGKRIVS--- 225

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G R  + G +G  + +          ++ +  EGK + F   L GEFQ YN   A   
Sbjct: 226 VVGKRARTYGKEGD-LRITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILT 284

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               GID  +V E ++ + V PGRFE    +  G  + VDYAHT ++LE +L+  R IT 
Sbjct: 285 AFLRGIDPQVVEEGVKDVRV-PGRFETYRKD--GKTVIVDYAHTPDALEKLLRTARGITR 341

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---G 438
           GR++VVFG GG+RD+ KRP+MG++A + AD+ ++T DNPR EDP  I  +I+ GI     
Sbjct: 342 GRLLVVFGAGGNRDRTKRPLMGEVAQNWADVIVLTSDNPRWEDPISIIEDIMEGISQKNK 401

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + + +R +AIR A+EM  + DV+V+AGKGHE    +       S D  ++REIL
Sbjct: 402 VLVEPDREKAIRLAVEMAKEGDVVVIAGKGHEDYQEIKGVRYPFS-DSAVVREIL 455


>gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
 gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
          Length = 509

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 164/493 (33%), Positives = 261/493 (52%), Gaps = 40/493 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I+  ++FVA+ G+  DGH FI +AI  GA+ I+         + +   S+
Sbjct: 21  IKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMIISEKNIDTGQYQSA--SD 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + V+  RK L + AS  YG +P++   I+ +TGT+GK++ + F++ I +++     +
Sbjct: 79  VTFIQVEGIRKKLGIIASNYYG-YPQDKIKIIGITGTNGKTTSSFFLENILEKTA----R 133

Query: 147 IGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           IG T        F   N  TTP  + L K +      G  +  +E SSH L+  R+D +K
Sbjct: 134 IGTTGNRILDKEFETVN--TTPESLELIKLIDKSVKSGADYFIMEVSSHALEIGRVDMLK 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---PAIIYADDAYSKEVMKRA 260
             +  FTNL +DH+D+H+T + YFNAK ++F  L   ++     +I  DD Y  ++    
Sbjct: 192 FDSAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDDEYGAKIYLEN 251

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKD-------FDFLFPLP 307
           +      +SV  +   I    +   +N  +V I+++      GK+       + F   L 
Sbjct: 252 NAKNFISISVKNEDADIWGDILNYTNNGMKVKINLKNYLEKYGKNLKNTENVYRFEIDLV 311

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE+ +YN L      +++GI+   +++ LE +  VPGRFE +  N    RI VD+AHT +
Sbjct: 312 GEYNLYNILGCIASALSLGIEMDFIVKKLETMPAVPGRFETI-KNDLDVRIVVDFAHTDD 370

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L  + K ++ IT  R+I +FG GGDRD  KRP M + A+  +D  I+T DNPR+E+P K
Sbjct: 371 GLLNVGKTLKQITDNRVITIFGAGGDRDHEKRPKMAQAAIKFSDFIILTSDNPRTENPTK 430

Query: 428 IRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           I A+I  G+ G       ++   +R  AI+    ML K D L++AGKGHET  I+   EK
Sbjct: 431 ILADIEKGLIGEKFPFNRYLIIADRERAIKYGTRMLEKGDSLLIAGKGHETYQIIGT-EK 489

Query: 481 KMSVDCDIIREIL 493
               D +I++E L
Sbjct: 490 IHFDDREIVKEAL 502


>gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 498

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 162/466 (34%), Positives = 244/466 (52%), Gaps = 29/466 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR ++ G +FVA+ G+  DGH F  QA+ +GA A++V      ++  A + ++ P 
Sbjct: 26  ITTDSRDVEPGSLFVAVRGHTVDGHRFARQAVERGAVAVMV------EEPVAEVPASIPQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +VV +TR + +L A RL+G       ++ VTGT+GK++V   V+ +   +G  +  IG  
Sbjct: 80  VVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTV 139

Query: 151 STI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 +S+   N  TTP  + + + L      G TH  +E SSH L + R  G+     
Sbjct: 140 GAKLGQASWPLPN--TTPEAVEVHRWLRRFVDAGATHAVMEVSSHALVERRAAGVSFACA 197

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELL------PKESP-AIIYADDAYSKEVMKRA 260
           +FTNL +DH+D+H T + Y  AK  LF  L       P  S  A+I  DD +S  VM  A
Sbjct: 198 AFTNLTQDHLDFHGTMERYAGAKALLFSRLGNGTGDDPARSVYAVINVDDPWSS-VMAEA 256

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A      +   G  +  + V    +  +  +      F+   PL G F VYN L A  
Sbjct: 257 SAAPILTYGIERAGD-VRARDVRLSASGARFFVDSPAGAFEIETPLIGRFNVYNTLAAVA 315

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + +  G+    + E +     VPGR E +    +   ++VDYAHT + LE +L ++R   
Sbjct: 316 IALVEGLTPTEIQEGIRSYPSVPGRMERI-DEGQPFSVFVDYAHTPDGLENVLASVREFA 374

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439
             R++VV GCGGDRD+ KRP M ++A+ LAD AI T DNPRSEDP  I A++  G+ P +
Sbjct: 375 PARVLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPVAILADMRGGVEPAY 434

Query: 440 I----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                E+ +R  AI  AI      DV+V+AGKGHE   I+   EK+
Sbjct: 435 AHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKGHEDYQII-GAEKR 479


>gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 494

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 253/469 (53%), Gaps = 17/469 (3%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + I    W +  +  +  DSR ++ G  F+AI+G+  DG ++I +AI  GA A V++ A 
Sbjct: 15  VDISSYSWSKIGVKHLELDSRKVEVGSTFIAILGHNVDGRVYINEAIKSGANA-VIAQAC 73

Query: 78  SLQDFSAT-IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            L     T +R N PI+ VD+    LS  A R++      ++AVTGT+GK+++   + Q 
Sbjct: 74  PLNTHGKTEVRDNVPIVFVDDLGIHLSSLAKRIFPLKNNKLIAVTGTNGKTTITQLIAQW 133

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +     +  +G T   + F  D +    TT + I + + L  L  QG  + ++E SSHG
Sbjct: 134 FELVSCHAAVLGTTG--NGFIDDLKPATNTTGNAIEVQQTLHALEQQGAKYTALEVSSHG 191

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L Q R+  ++   G F+NL RDH+DYH T + Y  AK  LF +   K+  AII  DD   
Sbjct: 192 LSQGRVKALEFEVGIFSNLSRDHLDYHGTMENYEQAKFSLFNQHCCKQ--AIINIDDPVG 249

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQ 311
           K  +    +A    +S+  Q     +   C  ++   ++++ +G   D +    L G F 
Sbjct: 250 KRWLGYLDSA--VAVSLHPQDFPRSVWAKCVNYSVNGISLAFDGMFGDGEIEVALIGGFN 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    + +G+D   ++     L  V GR E   T S+  ++ VDYAHT ++LE 
Sbjct: 308 ANNVLIAMTTLLCMGVDKKQLIATAPLLRPVIGRMELF-TASKQAKVIVDYAHTPDALEK 366

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L  ++  + G + V+FGCGGDRD GKRP+MG+I+ +LAD  I+TDDNPRSEDP  I  +
Sbjct: 367 ALHALKDHSGGALWVIFGCGGDRDVGKRPMMGRISEELADRVIITDDNPRSEDPTLIVKD 426

Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I  G+      + + +R  A++ AIE    +D++++AGKGHE   ++++
Sbjct: 427 IQAGMSRPESVMVEHDRRAALKYAIEHSRPEDIILMAGKGHEDYQVLSD 475


>gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 484

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 254/476 (53%), Gaps = 36/476 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN-TPILV 94
           DSR ++ G +FVA+ G+  DG  FI  A+ +GA  +V       +  S  +++    ++V
Sbjct: 24  DSRKVRQGDVFVALPGSSVDGGAFIADALERGASYVVC------RPCSVPVQTGGAAVVV 77

Query: 95  VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            ++ RK L L A+  Y        ++ +TGT+GK++    +  + + +G  +  +G T  
Sbjct: 78  AEDPRKALGLLAAARYDTADTGFPLVGITGTNGKTTCTYLLDHLFRTAGHVTGLLG-TVN 136

Query: 153 ISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                 D    +TTP  + L   LS +   GV    +E SSH LDQ R+ G +  A   T
Sbjct: 137 FRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEAAFMEVSSHALDQQRVSGARFAAALLT 196

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYH   +AYF+AK RLF EL  ++    + ADD Y + ++ +          V
Sbjct: 197 NLTQDHLDYHHDMEAYFSAKSRLFLELPDEDKVCAVNADDPYGRRLLPQLGRG------V 250

Query: 271 GY--QGKFIHLKKVCAIH------NKQQVTISVEGKDFDFLFPLPGEFQVYN--ALVAAG 320
           GY  QG  +   +V          +   +++  EGK ++   PL G F   N   + AAG
Sbjct: 251 GYSVQGTVVPDCQVLQATILSSGPDGLHLSMDFEGKTWELRSPLVGAFNASNLAGVQAAG 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L + + +++   ++ L     VPGR E +  N +G  ++VDYAHT ++LE +L+ +R   
Sbjct: 311 LAMGLPVEA---MQGLASFSGVPGRMERI-ENDKGLNVFVDYAHTPDALENVLRALRAAG 366

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
             R+I VFGCGGDRD+ KRP+MG+     AD+A++T DNPR+EDP  I A++  G+    
Sbjct: 367 FARVIAVFGCGGDRDRTKRPLMGQAVCRHADVAVLTSDNPRTEDPVAIMADVKPGLAQCD 426

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +E+ +R +A+  A+EM    D ++VAGKGHE   ++   +   S D + +RE+L
Sbjct: 427 HVVEEPDRRKALAAAVEMARPGDAVLVAGKGHEDYQVIGTTKIHFS-DQETLRELL 481


>gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
 gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
          Length = 493

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 172/509 (33%), Positives = 266/509 (52%), Gaps = 36/509 (7%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L +L+  + D PEL +             +  +  DSR ++ G  FVAIVG+  DG  
Sbjct: 5   MNLTNLLAPWLDCPELAD-----------ITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117
           +I +AI QGA A++  S           + N  I+ ++   + LS  A RLY +HPE ++
Sbjct: 54  YIEKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLY-QHPEMSL 112

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++   + Q  + +G  +  +G T     +  Q    TT + + + K L+ 
Sbjct: 113 IGVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLAD 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +AY  AKM LF E
Sbjct: 173 LQQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE 232

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   AII  DD    +  +     G  V           L      + +  +TI   
Sbjct: 233 --HQCQHAIINLDDEVGAQWFQELQQ-GVGVSLFPQDASVKALWASSVAYAESGITI--- 286

Query: 297 GKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +FD  F       PL GEF   N L+A    +A+G+D   +L+    L  V GR E  
Sbjct: 287 --EFDGCFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELF 344

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             NS+  ++ VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  L
Sbjct: 345 QVNSKA-KVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERL 403

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  ++TDDNPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AG
Sbjct: 404 ADHVVLTDDNPRSEDPTMIVQDMLAGLTRADSAVVEHDRFSALQYALDNAQADDIILLAG 463

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHE   ++ +     S D +  +++LG+
Sbjct: 464 KGHEDYQVLKHQTVHYS-DRESAQQLLGI 491


>gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
 gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
          Length = 493

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 172/509 (33%), Positives = 266/509 (52%), Gaps = 36/509 (7%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L +L+  + D PEL +             +  +  DSR ++ G  FVAIVG+  DG  
Sbjct: 5   MNLTNLLAPWLDCPELAD-----------ITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117
           +I +AI QGA A++  S           + N  I+ ++   + LS  A RLY +HPE ++
Sbjct: 54  YIEKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLY-QHPEMSL 112

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++   + Q  + +G  +  +G T     +  Q    TT + + + K L+ 
Sbjct: 113 IGVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLAD 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +AY  AKM LF E
Sbjct: 173 LQQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE 232

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   AII  DD    +  +     G  V           L      + +  +TI   
Sbjct: 233 --HQCQHAIINLDDEVGAQWFQELQQ-GVGVSLFPQDASVKALWASSVAYAESGITI--- 286

Query: 297 GKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +FD  F       PL GEF   N L+A    +A+G+D   +L+    L  V GR E  
Sbjct: 287 --EFDGCFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELF 344

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             NS+  ++ VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  L
Sbjct: 345 QVNSKA-KVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERL 403

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  ++TDDNPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AG
Sbjct: 404 ADHVVLTDDNPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAG 463

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHE   ++ +     S D +  +++LG+
Sbjct: 464 KGHEDYQVLKHQTVHYS-DRESAQQLLGI 491


>gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
 gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
          Length = 495

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 155/454 (34%), Positives = 242/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AI QGA  ++  +     +  +  R  
Sbjct: 27  ITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIVQGANLVLAQADAEHPNGVSEYRQQ 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ + +    LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVIYLADLGTHLSEMAGRLYGDHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     S  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLSALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 VTKPGTAQAIWARQVEYAESGITLNFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKNALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLNHPELAHIEH- 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NR +A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 NRFQAASYALQQAGAQDIILLAGKGHEDYQVLAN 476


>gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer RA-YM]
 gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 486

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 179/497 (36%), Positives = 254/497 (51%), Gaps = 66/497 (13%)

Query: 32  EVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           EVSS   DSR  +A  ++VAI G+  DGH FI  A+ +GA+ IV      L+D    +  
Sbjct: 22  EVSSIVFDSRKAEAKSLYVAIKGSVSDGHQFIGSAVEKGAKVIV------LEDLPEILDE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V N  K L   AS  YG   E  N++ VTGT+GK+SV++ +  + +  G  S  
Sbjct: 76  TITYIKVKNLSKVLGQLASNFYGNPSEKLNLVGVTGTNGKTSVSTLLFDVFKNLGYPSAL 135

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           I   ST+     D       TTP  + L + L+   +QG  +  +E SSHG+ Q+R +G+
Sbjct: 136 I---STVEYRIGDEVFPSTHTTPDVVKLNELLAKAVAQGCEYAFMEVSSHGIHQNRTEGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD------------ 250
                 FTN+  DH+DYH+T   Y N K   F+ L P  + AI   DD            
Sbjct: 193 HFKVAGFTNITHDHLDYHKTFLEYLNTKKSFFDNL-PDSAVAITNLDDKNGLVMLQNTKA 251

Query: 251 ---AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               Y+ + +   H    R+L V + G  ++        N ++V  S+ GK         
Sbjct: 252 KKKTYALKTLSDYHG---RLLEVDFNGMLLNF-------NGKEVWTSLTGK--------- 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTS 366
             F VYN L+  G+   +G D   +L  + +L  V GRFE +   S GG  +V DYAHT 
Sbjct: 293 --FNVYNLLLVFGIARELGFDEVEILTAISQLKRVNGRFETI--KSEGGIFFVVDYAHTP 348

Query: 367 NSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           ++LE IL +I  I +   R+I VFGCGGDRD  KRP MGKIA   + +AI+T DNPR+ED
Sbjct: 349 DALENILDSINEIRTKNERLISVFGCGGDRDHSKRPEMGKIATQKSTLAIITSDNPRTED 408

Query: 425 PEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P  I  EI  G+ P    K     +R EAI+ AI+    +D+++VAGKGHE    V NG 
Sbjct: 409 PNTIIQEIEAGVEPQCFSKYTVVPDRREAIKMAIKFAEPKDIILVAGKGHEIYQEV-NGV 467

Query: 480 KKMSVDCDIIREILGLI 496
           K    D ++I E+  ++
Sbjct: 468 KHHFDDKEVILELCKMM 484


>gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
          Length = 489

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 170/479 (35%), Positives = 246/479 (51%), Gaps = 28/479 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V  DSR + AG +FVA+ G   DG+ FI  AIA GA AIV  S  +     A     
Sbjct: 22  VTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHGARAIVTDSREAWAAGGAV---- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P  +V N R+ L+  A+ ++G HPE++L   AVTGT+GK++ A  ++Q+ +        
Sbjct: 78  -PFYLVGNGRRALAGVAANVFG-HPEHVLKISAVTGTNGKTTTAFLLEQMLKSVNRKCLL 135

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T I    + +  TTP    L    +     G T   +E SSH L Q R+ G+ + 
Sbjct: 136 IGTIETHIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAVMEMSSHALAQERVWGVPVD 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH T + YF AK RLFE +   E+P +   ++     V     + G 
Sbjct: 196 VAMFTNLTQDHLDYHGTMERYFQAKARLFEGV-GAEAPRVAVVNEDSPAGVWLLTRDLGP 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V+S G         KV     + Q              PL G+  VYN L A+  C A+
Sbjct: 255 EVMSYGINAGEFRASKVALSAGRTQFLWETPYGAVQIDSPLTGKVNVYNLLAAS--CAAM 312

Query: 326 GIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           G    L LE + K    LH VPGRF+ V  N  G  + VDYAHT ++L  ++   R +  
Sbjct: 313 G--RGLTLEEIAKAAQGLHQVPGRFQTV-PNDLGITVVVDYAHTDDALRNLIGLARELVG 369

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
            GR+I +FGCGGDRD+ KRP MG+ A + +D+ ++T+DNPR+E+P  I  E + G+    
Sbjct: 370 KGRVITLFGCGGDRDKTKRPKMGRAAGEGSDLVVLTNDNPRTEEPGAILDEALAGVRETS 429

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVDCDIIREI 492
              + + +R  AI  AI+ +   D++++AGKGHE V I+  G        V   ++REI
Sbjct: 430 VECVVEPDRATAIALAIKAVKGGDIVLLAGKGHEKVQILKTGTVPFDDAEVAARVLREI 488


>gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 485

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 248/471 (52%), Gaps = 34/471 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS           +
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------KVEM 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138
           + N   +++D+ R  L   AS  Y + P+    I+ VTGT+GK+S    ++++       
Sbjct: 71  KHNVSYILIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPIT 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G   ++IG       F   N  TTP  + L K       + + +V +E SSH L+  R
Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGR 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +      FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +  
Sbjct: 184 VEVLDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDINNSVINVDDEYGKRLYD 242

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   ++S G +   +         +   + +  + +     F L G+F +YN L A
Sbjct: 243 EFIVDNPEIISYGIENGDLE----GDYSDDGYIDVKYKNQIEKVKFLLLGDFNLYNTLGA 298

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R 
Sbjct: 299 IGIALKIGISMEEILKRVSNIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARN 357

Query: 379 ITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
           I +G RII +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I  ++  G  
Sbjct: 358 IKNGSRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGFI 417

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               +  + +R +AI+ AI M  K D++++ GKGHET HI+  G KK   D
Sbjct: 418 KSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 494

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 241/470 (51%), Gaps = 50/470 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++ +I  +  DSR ++ G +FV + G   DGH F  +A+  GA AIV      +      
Sbjct: 20  QDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAERELDV------ 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
              + P+++V  + + LS+ +   YG+  +   ++ +TGT+GK+S    V +I +++G  
Sbjct: 74  ---DVPVIIVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  IG   T+     D  L    TTP  + L K    ++ + V    +E SSH L   R+
Sbjct: 131 TGLIG---TMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSK 254
            G       FTNL +DH+DYH+T   Y  AK  LF +L      E P  A++ ADD  S 
Sbjct: 188 HGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASA 247

Query: 255 --EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------- 303
             E +  AH     + + G +     + K         +TI+ +G  FD +         
Sbjct: 248 YFEKVTAAH-----ISTYGIKNNADVMAK--------NITITAQGTSFDLVTNKGTKHIT 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+F VYN L A   CIA GI    +   +E+LH V GRFE V    +   + VDYA
Sbjct: 295 MSLVGQFNVYNVLAAVATCIAAGIPFETITAAVEELHGVRGRFELVN-QQQEFPVIVDYA 353

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +SLE +L   R +T G++ VV GCGGDRD+ KRP M KIA++LAD  I T DNPRSE
Sbjct: 354 HTPDSLENVLNTCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSE 413

Query: 424 DPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DP  I  ++  G+    +    NR +AI  AI    K DV+++AGKGHET
Sbjct: 414 DPRAILRDMEAGVENEYYHSIANREQAIFFAIANAKKGDVVLIAGKGHET 463


>gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
 gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
          Length = 495

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 172/471 (36%), Positives = 247/471 (52%), Gaps = 38/471 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  DSR I+ G +FV I G   D H FIP     GA A++       Q  +  + +
Sbjct: 24  EILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLT------QRENVDVPA 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +L V +    L +     Y  +P     ++ +TGT+GK++ +  V+ I + +G    
Sbjct: 78  GISVLRVPDLNAALDIIVPYFY-DYPARSMRVVGITGTNGKTTTSYLVRAILRAAGR--- 133

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI    +D       TTP  + + + L+ + ++G+  V +E SSH LDQ R+ G
Sbjct: 134 RVGLVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVM 257
           I+     FTNL +DH+DYH+T + Y  AK RLFE +    +     A+I ADDA +  VM
Sbjct: 194 IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDA-AGAVM 252

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            RAH   C VLS G  Q   +  + V    +   + +    ++      + GEF VYN L
Sbjct: 253 -RAHTT-CPVLSYGVTQQAALTARDVRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVL 310

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMIL 373
            AAG   A GI   ++   LE    VPGRFE V    R G+   + VDYAHT + +E +L
Sbjct: 311 AAAGAARAEGIGYDVIRAALEGFTGVPGRFELV----RAGQDFSVIVDYAHTPDGMENVL 366

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R +T GRIIVVFGCGGDRD+ KRPIMG+I  ++AD+  +T DNPR+EDP  I  E+ 
Sbjct: 367 RTARAVTRGRIIVVFGCGGDRDRTKRPIMGRIGAEMADVVYITSDNPRTEDPAAILDEVE 426

Query: 434 HG-IPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            G +P    K      +R  AI  A+      D +V+ GKGHET  I+  G
Sbjct: 427 AGALPVLGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEG 477


>gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
 gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
          Length = 484

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 260/481 (54%), Gaps = 34/481 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I+ G +F+A+ G + DGH FI +A+ QGA A++      L++   T+  
Sbjct: 22  EIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQGAAAVL------LENLPDTLDE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N   + V +T +     A+  YG     +  + VTGT+GK+++A+ +  + ++ G   ++
Sbjct: 76  NVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTIATLLYNMFRKFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ ++  D  +    TTP PI L   L+ +++ G  +  +E SSH + Q R+ G+
Sbjct: 133 AGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECSSHAIHQRRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             + G FTNL RDH+DYH+T + Y NAK ++F + LPK + A+  ADD  +   M +   
Sbjct: 193 TFVGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKNAFALTNADDK-NGMFMVQNTK 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  +  S+     F    K+   H  + + + ++GK+    F   G+F V N L   G  
Sbjct: 251 ASVKTYSIKRMADF--RAKILECH-FEGMYLEIDGKEVGVQF--IGKFNVSNLLAVYGTA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--- 379
           + +G     +L  +  L  V GR E +  +  G    VDYAHT ++L  +L  I  +   
Sbjct: 306 VLLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFTAVVDYAHTPDALANVLAAIHDVLDS 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G +I V G GG RD+GKRP+M + A+  +D  I+T DNPR EDP+ I  +++ G+  F
Sbjct: 365 KGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVILTSDNPRDEDPQAIIDDMLAGLD-F 423

Query: 440 IEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +K       +R EAIRTA  M  K DV++VAGKGHE    + NG K    D ++IREI 
Sbjct: 424 TQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGHENYQEI-NGVKHHFDDHEVIREIF 482

Query: 494 G 494
           G
Sbjct: 483 G 483


>gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
 gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
          Length = 485

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 174/509 (34%), Positives = 275/509 (54%), Gaps = 39/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+ +     +  LSI      +  I  V+ DSR I  G IFVAI G + DGH FI
Sbjct: 1   MKLTDLLSE-----VKTLSI--TGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA+AI+      L+D  + ++     + V++T K +   A+  YG   + +  +
Sbjct: 54  NKAIESGAKAIL------LEDVPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSPIYLAKAL 174
            VTGT+GK+++A+ +  + +  G   +++G  ST+ ++    A     TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYNMFRAFG---YKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S +   G  +  +E SSH + QHR+ G+    G FTNL RDH+DYH+T + Y NAK ++F
Sbjct: 165 SKMVEAGCEYAFMECSSHAIHQHRIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAK-KMF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + LPK++ AI  ADD  +  +M +   A  +  S+     F    ++   H  + + + 
Sbjct: 224 FDSLPKKAFAITNADDK-NGMIMVQNCKANIKTYSIQRMADF--RARIIECHF-EGMYLD 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++GK+    F   G+F V N L   G  + +G     +L  L  L  V GR E +  +  
Sbjct: 280 IDGKEVGVQF--IGKFNVSNLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPI-RSPE 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           G    VDYAHT ++L  +L  I  +    +G+II V G GG+RD+GKRP+M + A+  +D
Sbjct: 337 GFTAIVDYAHTPDALSNVLSAIHDVMEGKTGQIITVCGAGGNRDKGKRPLMAQEAVKHSD 396

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + I+T DNPR EDP+ I  +++ G+        +   +R EA+RTA ++  K DV++VAG
Sbjct: 397 VVILTSDNPRFEDPQDIINDMVAGLDETQLNKVLTIVDRREAMRTAAKLAKKGDVILVAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHE    +  G K    D +++R+I  +
Sbjct: 457 KGHEDYQEI-KGVKHHFDDHEVLRDIFNI 484


>gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Heliobacillus mobilis]
          Length = 528

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 166/488 (34%), Positives = 255/488 (52%), Gaps = 41/488 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I+ ++ DSR +  G++F  I G K DGH F  QA+  GA  +VV     L+      
Sbjct: 53  KQEISGLAYDSRQVAPGFLFFCIPGQKTDGHNFAAQAVEGGAAVLVVERFVDLK------ 106

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144
               P + V +TR+ L+L A   YG   E++L +  T       +   ++ + +  G   
Sbjct: 107 ---VPQIRVTSTRESLALAAGAFYGHPSEHLLMIGVTGTNGKTTTTYMIEAVLKAKG--- 160

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           + +G   TI +   + R     TTP    L K L+ +   G   V +E SSH LDQHR+ 
Sbjct: 161 YSVGVIGTIGNQLGEKRWPAAHTTPESSDLQKLLAEMRDDGADAVVMEVSSHSLDQHRVL 220

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------AIIYADDAYSK 254
           G+     +FTNL +DH+DYH T + Y  AK +LF EL  KES       A+I ADD  + 
Sbjct: 221 GVNFDIAAFTNLTQDHLDYHHTLENYRAAKGKLFRELGQKESKKGIVKRAVINADDPSAD 280

Query: 255 EVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++ +      V +V Y   +   I  K         + T+   G   D    L G F 
Sbjct: 281 YFLQVSS-----VPAVTYGVEEDAAIRAKDWDVTPQGARCTVQYPGGTVDMTLQLTGRFN 335

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+L A  +   +G++   ++E L+ L  VPGRFE V    +   + VDYAHT + L  
Sbjct: 336 ISNSLAAFTVGWIVGMEPEQIVEALQSLRGVPGRFESV-DQGQPFSVIVDYAHTPDGLVN 394

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L     +  G+I+ VFGCGGDRD+ KRPIMG +  +++DIA+VT DNPR+E+P +I  +
Sbjct: 395 VLNTAEALAEGKIVTVFGCGGDRDRTKRPIMGAVVAEMSDIAVVTSDNPRTENPHRIIED 454

Query: 432 IIHG---IPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485
           I+ G   +PG   K   +R +AI  A+ M N  D++++AGKGHE   IV  G++ +   D
Sbjct: 455 ILPGVQAVPGIEYKVEPDRKKAIALALSMANPGDLVMIAGKGHENYQIV--GKEVLPFDD 512

Query: 486 CDIIREIL 493
            ++ R++L
Sbjct: 513 REVARQVL 520


>gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
 gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
          Length = 485

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 251/474 (52%), Gaps = 24/474 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L + L   P+ +    ++ +  DSR +  G +FVA+ G   DG  +I  AIA GA AI+
Sbjct: 2   QLRDLLPPLPITFPNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYINTAIAAGARAIL 61

Query: 73  VS-SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128
              S+   ++    +    P       ++ LS  A R +  HP     ++ VTGT+GK+S
Sbjct: 62  AEGSSLRYEENGGAVCVFMP-----GVKEQLSEIAGRFF-NHPSRHATLIGVTGTNGKTS 115

Query: 129 VASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V     Q+ ++ G ++  IG T S +       + TTP  + + + LS L ++G   +++
Sbjct: 116 VTHLAAQLAEKLGYTAAVIGTTGSGLIGQLLPEKHTTPDAVTVQQRLSTLVAEGADFIAM 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L Q R++ ++      TN+ RDH+DYH +   Y +AK RLFE+   + +  +I 
Sbjct: 176 EVSSHALVQRRVEALRFDTAVATNISRDHLDYHGSMAHYVDAKRRLFEDF--ELNHRVIN 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD Y ++ ++ A N     LS+  QG     I +  +    +    T++ EG++  F  
Sbjct: 234 LDDRYLRDWLEGASNG----LSISLQGHSRANIQVSDLAFAEHGTTFTLAYEGREAQFST 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F VYN + A  + +A       + +H   L  VPGR E     S    + VDYAH
Sbjct: 290 PLLGRFNVYNVVSAVAIMLAQKQSLTAIAQHCRHLSPVPGRMEAFQAGS-SALVVVDYAH 348

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++L+ +L+ +R    G++  VFGCGGDRD+GKRP MG++A + AD  +VTDDNPR+E 
Sbjct: 349 TPDALQQVLQALRLHCKGKLWCVFGCGGDRDRGKRPQMGQVAAEFADRVVVTDDNPRTEA 408

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           P++I A+I+ GI           R +A+   IE     DV+++AGKGHE   ++
Sbjct: 409 PQQIIADIMAGIADKRKVHSMEGRRQAVLDTIERAAPDDVVLLAGKGHEDYQVI 462


>gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus YJ016]
 gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016]
          Length = 515

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 172/509 (33%), Positives = 266/509 (52%), Gaps = 36/509 (7%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L +L+  + D PEL +             +  +  DSR ++ G  FVAIVG+  DG  
Sbjct: 27  MNLTNLLAPWLDCPELAD-----------ITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 75

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117
           +I +AI QGA A++  S           + N  I+ ++   + LS  A RLY +HPE ++
Sbjct: 76  YIEKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLY-QHPEMSL 134

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++   + Q  + +G  +  +G T     +  Q    TT + + + K L+ 
Sbjct: 135 IGVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLAD 194

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +AY  AKM LF E
Sbjct: 195 LQQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE 254

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   AII  DD    +  +     G  V           L      + +  +TI   
Sbjct: 255 HQCQH--AIINLDDEVGAQWFQELQQ-GVGVSLFPQDASVKALWASSVAYAESGITI--- 308

Query: 297 GKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +FD  F       PL GEF   N L+A    +A+G+D   +L+    L  V GR E  
Sbjct: 309 --EFDGCFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELF 366

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             NS+  ++ VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  L
Sbjct: 367 QVNSKA-KVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERL 425

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  ++TDDNPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AG
Sbjct: 426 ADHVVLTDDNPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHE   ++ +     S D +  +++LG+
Sbjct: 486 KGHEDYQVLKHQTVHYS-DRESAQQLLGI 513


>gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-66c26]
 gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CIP 107932]
 gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-76w55]
 gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-97b34]
 gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-37x79]
 gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CD196]
 gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile R20291]
 gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-32g58]
 gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile CD196]
 gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile R20291]
          Length = 484

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 174/491 (35%), Positives = 248/491 (50%), Gaps = 43/491 (8%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL D+I   D   +  +L+I         IN V  +SR +  G +F+ I G   DGH +
Sbjct: 1   MKLNDIIQGLDIINVKGELNI--------DINNVQYNSRKVTKGTLFICIKGFVSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116
           I  AI +GA A +V            I+  T I V D TRK ++  A   Y  HP    N
Sbjct: 53  IKDAIEKGASAFLVEE-------DVEIKGCTFIKVKD-TRKDMAKVADNFYN-HPSQKFN 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+S+ + + +I     L+  ++G   TI  F  +  +    TTP  I L  
Sbjct: 104 VIGVTGTNGKTSITTILNEILT---LNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQY 160

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +   G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +
Sbjct: 161 HFNNMLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEK 220

Query: 233 LFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288
           LF          II  DD   K++ +  +  N  C    V  +  F+   +K      + 
Sbjct: 221 LF---FKTTMANIINIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSY 277

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +T S E   F    P+PG F VYN L     C  +GI   +  E L   + V GRFE 
Sbjct: 278 RLITPSYEEVIF---IPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFET 334

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  N +G  + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I   
Sbjct: 335 V-PNDKGISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQK 393

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVV 464
            +D+ I+T DNPR+E+PE I  +I+ GI    E      +R +AI  AI M  K DV+++
Sbjct: 394 YSDLCIITSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVII 453

Query: 465 AGKGHETVHIV 475
            GKGHET  I+
Sbjct: 454 TGKGHETYQII 464


>gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
 gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
          Length = 484

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 165/480 (34%), Positives = 259/480 (53%), Gaps = 32/480 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I+ G +F+A+ G + DGH FI +A+ QGA A++      L++   T+  
Sbjct: 22  EIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQGAAAVL------LENLPDTLDE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N   + V +T +     A+  YG     +  + VTGT+GK+++A+ +  + ++ G   ++
Sbjct: 76  NVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTIATLLYNMFRKFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ ++  D  +    TTP PI L   L+ +++ G  +  +E SSH + Q R+ G+
Sbjct: 133 AGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECSSHAIHQRRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             + G FTNL RDH+DYH+T + Y NAK ++F + LPK + A+  ADD  +   M +   
Sbjct: 193 TFVGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKNAFALTNADDK-NGMFMVQNTK 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  +  S+     F    K+   H  + + + ++GK+    F   G+F V N L   G  
Sbjct: 251 ASVKTYSIKRMADF--RAKILECH-FEGMYLEIDGKEVGVQF--IGKFNVSNLLAVYGTA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--- 379
           + +G     +L  +  L  V GR E +  +  G    VDYAHT ++L  +L  I  +   
Sbjct: 306 VLLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFTAVVDYAHTPDALANVLAAIHDVLDS 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G +I V G GG RD+GKRP+M + A+  +D  I+T DNPR EDP+ I  +++ G+   
Sbjct: 365 KGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVILTSDNPRDEDPQAIIDDMLAGLDST 424

Query: 440 IEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +K      +R EAIRTA  M  K DV++VAGKGHE    + NG K    D ++IREI G
Sbjct: 425 QKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGHENYQEI-NGVKHHFDDHEVIREIFG 483


>gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 172/509 (33%), Positives = 266/509 (52%), Gaps = 36/509 (7%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L +L+  + D PEL +             +  +  DSR ++ G  FVAIVG+  DG  
Sbjct: 5   MNLTNLLAPWLDCPELAD-----------ITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117
           +I +AI QGA A++  S           + N  I+ ++   + LS  A RLY +HPE ++
Sbjct: 54  YIEKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLY-QHPEMSL 112

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++   + Q  + +G  +  +G T     +  Q    TT + + + K L+ 
Sbjct: 113 IGVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLAD 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +AY  AKM LF E
Sbjct: 173 LQQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE 232

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   AII  DD    +  +     G  V           L      + +  +TI   
Sbjct: 233 --HQCQHAIINLDDEVGAQWFQELQQ-GVGVSLFPQDASVKALWASSVAYAESGITI--- 286

Query: 297 GKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +FD  F       PL GEF   N L+A    +A+G+D   +L+    L  V GR E  
Sbjct: 287 --EFDGCFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELF 344

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             NS+  ++ VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  L
Sbjct: 345 QVNSKA-KVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERL 403

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  ++TDDNPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AG
Sbjct: 404 ADHVVLTDDNPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAG 463

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHE   ++ +     S D +  +++LG+
Sbjct: 464 KGHEDYQVLKHQTVHYS-DRESAQQLLGI 491


>gi|189184781|ref|YP_001938566.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
 gi|189181552|dbj|BAG41332.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
          Length = 489

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 250/466 (53%), Gaps = 29/466 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  I  ++  ++  +   IF A+ G    G+ FI  A+A GA  I+   A         
Sbjct: 11  KKLNIRNIAITAQSAKPNQIFFALPGISRHGNDFIDIALANGASLIITDQA--------P 62

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           I S + ++VV N    +    + LY K P+ ++AVTGT GK+SV ++ QQ+C  +G  + 
Sbjct: 63  ITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAA 122

Query: 146 QIGPTSTISSFAQDNRL-----------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            IG    I++    N+L           TT S I     L  L++ G+  V++EASSHGL
Sbjct: 123 SIGTLGVITTNNHLNKLLNQNKIKPECATTMSYIQTRYVLHQLATNGINFVALEASSHGL 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYS 253
           DQ+RL  IK  A +FT+  RDH+DYH+T   Y +AK++LF+E +     AI+  + +  S
Sbjct: 183 DQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNINELS 242

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               K     G ++LSV  QG  I +  V +  N Q+V    +  D+ F  P+ G   + 
Sbjct: 243 IIQSKITDEFGLKLLSVEQQGD-IQIIDVQSSLNGQKVHFRYKNSDYKFEVPVIGRVHIT 301

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEM 371
           N L+A  L I IG+DSA ++  L  L  + GR E +    + G  Y  VDYA T N+L  
Sbjct: 302 NILIALLLAINIGLDSAKLIPLLSNLKPIKGRMEKI----QFGNCYAFVDYALTPNALAT 357

Query: 372 ILKNIRTITS-GRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +L  +R + + GR+I +FG   +RD   +R  MG +A  L+D+ IVTD +  +EDP  IR
Sbjct: 358 MLTELRALNNKGRLITIFGGSENRDAIARRVQMGIVASKLSDLVIVTDQDSGNEDPAAIR 417

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            EI+      IE  NR EAI+ AI ++   D+L++AGKGHET  ++
Sbjct: 418 KEILQVARSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVL 463


>gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya dadantii Ech703]
 gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703]
          Length = 494

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 260/485 (53%), Gaps = 23/485 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG+K DG  +IPQAIAQG  AIV  +  +  + +   
Sbjct: 19  ERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAIVAQADAASPNGTCCE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143
               P++ +D+  + LS  A R Y +HP + L    VTGT+GK++ A  + Q  Q  G +
Sbjct: 79  LHGVPVVYLDDLNQRLSALAGRFY-QHPSDTLQLIGVTGTNGKTTTAQLLAQWTQALGKT 137

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G     +         TT S + + + LS   +QG    ++E SSHGL QHR++ +
Sbjct: 138 SAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFVAQGAQVAAMEVSSHGLVQHRVEDV 197

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A +FTNL RDH+DYH     Y  AK RLF E   +   A+I ADD   +  ++R  +
Sbjct: 198 SFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFSE--HRVGQAVINADDEVGRRWLERLPD 255

Query: 263 AGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNA 315
           A    ++V  +G     +   LK     ++    T+  +      +    L G F V N 
Sbjct: 256 A----VAVSVRGDIGAARRQWLKATRVDYHNSGFTVHFDSSWGQGVIDSSLMGAFNVSNL 311

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L++    +++G     ++     L  V GR E    + R   + VDYAHT ++LE  L+ 
Sbjct: 312 LLSLATLLSLGYPLEQLVITGSTLQPVCGRMEVFVADGRP-TVVVDYAHTPDALEKALEA 370

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSEDP+ I ++I+ G
Sbjct: 371 ARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQLADRVIVTDDNPRSEDPQAIVSDILSG 430

Query: 436 I--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G ++    R EA+ +AI      DV++VAGKGHE   +V N E+    D   +  +
Sbjct: 431 LLDAGRVQAIAGRAEAVTSAIMQAAADDVVLVAGKGHEDYQLVGN-ERLDYSDRITVARL 489

Query: 493 LGLIL 497
           LG+I+
Sbjct: 490 LGVIV 494


>gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
 gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
          Length = 492

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 257/474 (54%), Gaps = 18/474 (3%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E + +  I    + +  I  +++DSR ++ G IF A+ G ++DG  +I  AI++GA
Sbjct: 5   KEIVEYVREYVIETRGYLDGNITGIATDSRKVKEGNIFFALPGTRDDGRRYIGDAISKGA 64

Query: 69  EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            A+       + +   A IR      V+      +SL+      KH  NI+ VTGT+GK+
Sbjct: 65  RAVFFEGEVDNFERDVALIRVKEIFDVLSK----VSLYFYNFPSKHL-NIVGVTGTNGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S +    +  GL S  IG     I   +  +  TTP P  L + LS + ++GV  ++
Sbjct: 120 TTTSLLYHYWKGKGLKSGLIGTIDYRIDEESYPSNFTTPQPQELQEILSKMVNKGVKFLA 179

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+DG+ L A  FTNL +DH+D+H+T + YF AK+++F+ L   E  A+I
Sbjct: 180 MEVSSHALSLKRIDGVSLKAVVFTNLTQDHLDFHKTMEDYFQAKLKIFDHL-EDEGFAVI 238

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+ ++K    R + A  RVL    +   I+LKK    ++   + I+    D      L
Sbjct: 239 NRDNEWTK----RINLADKRVLWASLEEGDIYLKKYENTNSGMILEIATPLGDTVIDTKL 294

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F +YN L A G+ I +G     + + L     V GR EF+    +   + VDYAHT 
Sbjct: 295 RGKFNIYNILFAVGVLIGLGEPLEDISKILSTFKGVKGRLEFI-REGQNFNVIVDYAHTP 353

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           + L  +L+ I+  T GR+IVVFGCGGDRD  KR  MG+I+  LAD+ IVT DNPR+EDP 
Sbjct: 354 DGLYNVLQTIKEFTKGRVIVVFGCGGDRDPTKRGKMGEISAKLADVVIVTSDNPRTEDPM 413

Query: 427 KIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           KI  EI  GI       +    NR EAI+ AIE+  + D +++AGKGHE   I+
Sbjct: 414 KIIREIEKGIKRVGRLDYFVIENREEAIKKAIEIAKEDDSVLIAGKGHEDYQII 467


>gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
 gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
          Length = 494

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 244/461 (52%), Gaps = 24/461 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS----AYSLQDFSAT 85
           + ++  DSR  + G IFVA+VG+  DG  FI +A+A G  A++  +     + L ++  T
Sbjct: 27  VEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAEKPHGLIEWLDT 86

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +    P++ ++N    LS  A R+Y      ++ VTGT+GK+++   + Q     G  S 
Sbjct: 87  V----PVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSA 142

Query: 146 QIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +G T   + F  + +    TT S I + + LS L+++   + ++E SSHGL Q R+  +
Sbjct: 143 VMGTTG--NGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQGRVKAL 200

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G FTNL RDH+DYH T + Y  AK  LF +   K   A+I  DD   K  M    N
Sbjct: 201 DFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQ--HKCKHAVINVDDEVGKAWMSDLSN 258

Query: 263 AGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           A    LS   GYQ + +    V       Q++            PL G+F   N LVA  
Sbjct: 259 AIAVSLSPLTGYQ-QSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFA 317

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +++GID  ++++   +L  V GR E     ++  ++ VDYAHT ++LE  L  +R   
Sbjct: 318 TLLSLGIDKQILVDTAPQLQPVIGRMELFQVPNKA-KVVVDYAHTPDALEKALAALRVHC 376

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---- 436
           SG++  +FGCGGDRD GKRP+M   A   AD  I++DDNPRSE+P  I  +++ G+    
Sbjct: 377 SGKLWAIFGCGGDRDTGKRPMMSATAEQFADKIIISDDNPRSEEPALIVKDMLAGLSKPE 436

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             F+E  +R +A++ A+E     D++++AGKGHE   ++ +
Sbjct: 437 AAFVEH-DRYQAVKFALEQAGSDDIILLAGKGHEDYQVLKD 476


>gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 498

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 250/465 (53%), Gaps = 20/465 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDF 82
           +R +  ++ DSR I+ G++FVA+ G++  G  ++  A+A GA A++   A  +     + 
Sbjct: 19  DRPVGGLAVDSRDIEPGFVFVALRGSRHHGLGYLGDALAAGAGAVLWEPAGDVAPEPDER 78

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
           +A  R+  P++ V +  + L   A+RLYG       ++ VTGT GK+SV  ++ Q+  R 
Sbjct: 79  TAAERAGVPLIAVPDLGRRLGPIAARLYGDPSARMRVVGVTGTDGKTSVTQYLAQLLDRE 138

Query: 141 GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                 +G   S      Q    TTP    + + L+ L  QG   V++E SSH LDQHR+
Sbjct: 139 AHRCGLVGTLGSGFPDSLQPGTHTTPDAASVQRTLARLHRQGAAQVAMEVSSHALDQHRV 198

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G++      TNLGRDH+DYH     Y  AK RLF   +P    A++  DDA+ ++V   
Sbjct: 199 AGVRFHTAVLTNLGRDHLDYHGDLAGYAEAKSRLFG--VPGLQWAVLNLDDAFGRQVHG- 255

Query: 260 AHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           A   G R L     G+    +  + +       ++ +S E  +     PL G F   N L
Sbjct: 256 ALAGGTRALGYSLAGHPQAGVRGEGLVLEPQGLRLRLSTEWGEAPVQAPLLGAFNAANVL 315

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILK 374
             A   +++G+   +++E L  L  VPGR E     +R GR  + VDYAHT  +L   L 
Sbjct: 316 AVAAAALSLGVALPVIVERLAGLRPVPGRME---PFTRPGRPSVIVDYAHTPAALRGALA 372

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    G + +VFGCGGDRD+GKRP+MG+ A +LAD  ++TDDNPR EDP++I  +I  
Sbjct: 373 AVRAHYRGAVWLVFGCGGDRDRGKRPLMGEAAAELADRVVLTDDNPRREDPDRIIDDIRQ 432

Query: 435 GIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G PG  +    +R  AIR A+E    +DV++VAGKGHETV  + +
Sbjct: 433 GAPGRDWPVLRDRAGAIRHAVERAGPEDVVLVAGKGHETVQQIGD 477


>gi|56416559|ref|YP_153633.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
 gi|81359238|sp|Q5PBF1|MURE_ANAMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56387791|gb|AAV86378.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
          Length = 472

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 242/448 (54%), Gaps = 24/448 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR ++ G+IFV +    E    F+P A+  GA+ IV  +A  L         ++ I
Sbjct: 17  ITADSRSVKPGFIFVCL---SEAAKGFVPDAVKAGAKFIVAGNAGGLPHVD-----HSQI 68

Query: 93  LVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++           AS  Y    PE +  VTGT+GK+SVA F +QI   +G +   +G   
Sbjct: 69  IICPMQHDLYYKLASEFYHASQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGTLG 128

Query: 152 TI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            I   ++       TTP  + L K LS L    V ++ +EASSHG+ Q RL G+K  A +
Sbjct: 129 AIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASAAA 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL  DH+DYH + + Y+  K +LF E+L  E  A++ AD     E+ + A  AG  ++
Sbjct: 189 FTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELA--AGRNII 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G     + L ++        +T+ V G+  +D  FP+ G+FQ+ N L A  +  A G 
Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKVCGEVIYDGAFPVLGKFQISNLLCALAIVAASGS 306

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386
               V   +++L    GR E +G      RI +DYAHTS++L+  L +++      + ++
Sbjct: 307 GHRDV--PIDRLASPRGRMELIGD-----RIIIDYAHTSDALKHALTSLKWHGFPQKTVL 359

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPRSE+PE IR EI+      IE  +R 
Sbjct: 360 VFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDRG 419

Query: 447 EAIRTAIEMLNKQD-VLVVAGKGHETVH 473
           +AI  A+    + + VL++AGKGHET  
Sbjct: 420 DAIHYAVNFAIRNNYVLLIAGKGHETTQ 447


>gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
 gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
          Length = 509

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 245/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 41  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 100

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 101 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 160

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 161 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 220

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 221 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 278

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 279 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 338

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 339 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 397

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+  + E+     
Sbjct: 398 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 456

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 457 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 490


>gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           chlorochromatii CaD3]
 gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 516

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 167/465 (35%), Positives = 243/465 (52%), Gaps = 31/465 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  VSSDSR +  G +FVA+ G   DGH FI  AI +GA  IV       ++   +I
Sbjct: 40  EHCITAVSSDSRDMIEGALFVAVRGFCTDGHRFIESAIERGACIIVC------EELPQSI 93

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                 L V + RK L+  A+  YG   + +  + VTGT+GK++ +  + ++     + S
Sbjct: 94  THGCLYLRVIDARKALAHVAALFYGNPAKQLRFIGVTGTNGKTTTSRIITEMLTAFAVPS 153

Query: 145 FQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             IG T+      +D  L  TTP    L    + +   G   V +E SSH L   R+ G+
Sbjct: 154 GYIG-TNLCRIGKRDIPLERTTPEAHELHALFALMVEAGCKAVVMEVSSHALLLQRVYGL 212

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A  FTNL +DH+D+H T QAY  AK  LF++L P +  AI+  DDAY+  +++R   
Sbjct: 213 RFDAALFTNLTQDHLDFHHTMQAYAEAKQLLFDQLQP-DGVAIVNTDDAYAPLMLQRV-- 269

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFP----------LPGE 309
           A  + +    Q     + +        Q  +   S+   + +  FP          L G 
Sbjct: 270 APSQRVCCTLQANVPSVLQCPQYGQDFQAEVRHASLAATEMELRFPKGETELLTVGLAGS 329

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + V N L AA     +G+  A +   L  +H V GR E VG  +   +I+VDYAHT ++L
Sbjct: 330 YNVMNVLQAAATGYCLGLQPAAICRALAAVHSVDGRMERVGRPNLPYQIFVDYAHTPDAL 389

Query: 370 EMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  L+ ++ +     R++V+FGCGG+RD+ KRPIMG IA  LAD+ I+T DNPR E P+ 
Sbjct: 390 QKALETLKALKGEEARLMVLFGCGGNRDRLKRPIMGSIAASLADVVILTSDNPRDESPDA 449

Query: 428 IRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I  EI  G+ G   +   +R EAIRTAI  L   DVL++AGKGHE
Sbjct: 450 ILDEIEQGMQGAAHQRIADRAEAIRTAISQLQAGDVLLIAGKGHE 494


>gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
 gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
          Length = 500

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 174/489 (35%), Positives = 262/489 (53%), Gaps = 39/489 (7%)

Query: 13  ELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           ELI  ++I  +    + +I+ ++ DSR I+ G +FVA+ G   DGH FI  A+ +GA A+
Sbjct: 5   ELIENINIKTLSGGLDLEISHINYDSRRIEPGDLFVAMKGQSLDGHDFIGDAVRKGAVAV 64

Query: 72  VVS-SAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHP---ENILAVTGTSGK 126
           +      ++    A      P+L+ V+++RK LS  A+  YG HP    N++ +TGT+GK
Sbjct: 65  LSELKTDAIARKLACESDQMPVLLQVEDSRKALSQLAATFYG-HPFRTMNLIGITGTNGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ +  ++ I   +G +   IG  +  I      + +TTP  + L K L  ++ Q  T V
Sbjct: 124 TTTSYLLEFILAAAGRNPGVIGTINRRIGQLCFKSSVTTPESLDLMKILREMADQSATDV 183

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----E 241
            +E SSH LDQ R+         FTN+ RDH+DYH +   YF AK  LFE L  +     
Sbjct: 184 IMEVSSHALDQGRVADCPFRVALFTNISRDHLDYHHSMDDYFRAKSLLFEGLGNRGNQGA 243

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---- 297
           + A+I  DD + K +M        R ++ G       L   C +  K  V++S +G    
Sbjct: 244 ACAVINTDDPWGKHLMALTP---ARTVTYG-------LGNSCDVTAKD-VSVSRKGLHAR 292

Query: 298 ------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 ++ D    L G F +YN + AA   +A+G+DS  +L  +E++  VPGR E V  
Sbjct: 293 LIFEKREEIDIRSSLIGNFDIYNIMAAASAAMAMGVDSKAILLGIERMKGVPGRMELV-P 351

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N R   I VDYAHT ++LE  L   + ITSGRI+ VFGCGGDRD+GKR  MG+IA   + 
Sbjct: 352 NDRSLAIIVDYAHTPDALEKALAATKQITSGRILTVFGCGGDRDKGKRYEMGRIAGANSH 411

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              VT DNPRSEDP  I  +I  G+       ++ + +R +AIR A+      D++++AG
Sbjct: 412 RIFVTSDNPRSEDPASIADQIEKGVIASGHQNYVIELDREKAIRMAVREAANDDLVLIAG 471

Query: 467 KGHETVHIV 475
           KGHE   ++
Sbjct: 472 KGHEDYQLM 480


>gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
 gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
          Length = 499

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 31  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAG 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 91  VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+  G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAEHGAQYTALETSSHGLVQGRVKKLHFVAGV 210

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 269 VAKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  +I VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KIVVDYAHTPDALEKALRALRVHCAGQLWAI 387

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 446

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 447 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 480


>gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL J1-023]
          Length = 491

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 238/467 (50%), Gaps = 41/467 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N+++ DSR +Q G +F+ I G   DGH F  +A+  GA AI+      +         
Sbjct: 22  EVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLGAVAIIAEKQLDV--------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P+L V ++++ +++ A   YG   +   ++ +TGT+GK++V+  V+QI + +G  +  
Sbjct: 73  SVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGL 132

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I     + + TTP  + L +    +   GV+   +E SSH L Q R+ G    
Sbjct: 133 IGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGRVYGSDYD 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260
              F NL +DH+DYH T + Y  AK  LF +L     L     A++ ADD   KE ++  
Sbjct: 193 VAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADD---KESVRMQ 249

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311
                 V++ G         K  A  +   + I+  G  FD   P         + G F 
Sbjct: 250 TATAAHVITFGI--------KEPADFSASNIQITSHGSTFDLKTPVGDFSLKIKMIGNFS 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +YN L A     A+ I     +  +E +  V GRFE V    +   + VDY+HT +SL  
Sbjct: 302 IYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNA-GQDFPVIVDYSHTPDSLLN 360

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I T DNPRSEDP  I A+
Sbjct: 361 VLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIAD 420

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I G+PG   ++   NR +AIR AI M    DV+++AGKGHE   ++
Sbjct: 421 MIQGVPGSDSYVVHENRRDAIRYAINMAEAGDVILIAGKGHEDYQVI 467


>gi|163854998|ref|YP_001629296.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella petrii DSM 12804]
 gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bordetella petrii]
          Length = 943

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 245/461 (53%), Gaps = 39/461 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR + AG +FVA  G   DG  FI QA+A+GA A V+  A +  D +   R    +  V
Sbjct: 31  DSRDVAAGDVFVACSGGSADGRAFIGQALARGAAA-VLCQAPAPGDVATDAR----VRAV 85

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            + R+ L   A   YG+     +++AVTGT+GK+S   +V Q    +G     IG   T+
Sbjct: 86  PDLRELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIG---TL 142

Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +   D R     LTTP  + + + L+ + + G   V++EASS G++Q RLDG+++    
Sbjct: 143 GAMLPDGRTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVAG 202

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH + + Y  AK RLF+   P  + A+I ADDA  + +++       R L
Sbjct: 203 FTNLTRDHLDYHGSMERYEQAKARLFQ--WPGLAAAVINADDAAGERLLRTLP----RGL 256

Query: 269 SVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           ++GY  + +      +++ A  + Q  T++    +   +  L G   V N L+ AG+   
Sbjct: 257 ALGYTQQDVPTAFQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYK 316

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +G   A +   L     V GR + V        G   RG  + VDY+HT +SL   L  +
Sbjct: 317 LGWPLAQLARALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVDYSHTPDSLARALAAL 376

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R +     GR++ +FGCGG+RD GKRP MG+IA DLAD   V+ DNPR EDP  I A+I+
Sbjct: 377 RPVADARGGRLVCLFGCGGERDTGKRPEMGRIAADLADKITVSSDNPRGEDPAAIIAQIV 436

Query: 434 HGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            GIP       + +R  AI   I   +  DV+++AGKGHET
Sbjct: 437 AGIPRGARLQVEADRARAIMQTIWAADPDDVVLLAGKGHET 477



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 159/376 (42%), Gaps = 34/376 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I A  +F+A+ G + DGH ++ QA + GA A +V+             ++ P 
Sbjct: 506 LSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIVAHPVD--------GASLPQ 557

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--IGPT 150
           LV+ +TR+ L    +    ++   ++ V G++GK++    +  I     L+ +Q   G  
Sbjct: 558 LVLGDTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAI-----LADWQGEAGRL 612

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF- 209
           +T  +F  D        I +   L  L +Q    V     +H  +   L  +   + +  
Sbjct: 613 ATAGNFNND--------IGVPLTLLRLRAQHRAAVIELGMNHPGEIAVLAALAAPSVALV 664

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN  R+H ++  + +A         E  LP++  A+   DD +    +  A     RVL 
Sbjct: 665 TNAQREHQEFMHSVEAVAQENGASIEA-LPEDGVAVFPGDDPHCG--IWEAQAGARRVLR 721

Query: 270 VGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G Q G  ++ +++ A  +  +  +       D + P+ G   + NAL A    +A G  
Sbjct: 722 FGLQPGLDVYAEQIDATPHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAP 781

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIV 386
            A  +  L     V GR +    +   G I +D  + +N  S+   +  +  + + R +V
Sbjct: 782 LAGAVRALSAFSAVAGRMQRQTLDD--GTILIDDTYNANPDSVRAAVDVLARLPAPRALV 839

Query: 387 VFGCGGDRDQGKRPIM 402
           +   G   D G  P M
Sbjct: 840 LGDMGEVGDNG--PAM 853


>gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
 gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
          Length = 495

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 245/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 27  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+  + E+     
Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 476


>gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Vibrio cholerae LMA3894-4]
          Length = 495

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 244/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 27  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAG 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 476


>gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
 gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
          Length = 517

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 167/470 (35%), Positives = 243/470 (51%), Gaps = 46/470 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R ++ VSSDSR I  G IFVA+ G   DGHL I  AI  GA AIV  +      + A +
Sbjct: 33  DRPVSGVSSDSRQIGPGSIFVAVRGFITDGHLHIDSAIEAGAVAIVCEA------YPAEL 86

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSS 144
           R     L V  +RK L+  +   YG   + ++   VTGT+GK++ A  +  +   +G+ +
Sbjct: 87  RDGVCYLRVTESRKALAELSKNCYGNASDQLMLIGVTGTNGKTTTARLISSMLNAAGIPA 146

Query: 145 FQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             IG T       +D  L  TTP P  L      +   G     +E SSH L   R+ G+
Sbjct: 147 GYIG-TGLCRIGNRDIELERTTPEPNGLHALFRQMVDAGCCAAVMEVSSHALVLDRVHGL 205

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  +  FTNL  +H+D+H+T + Y  AK  LF  L   +  A++ ADD  +         
Sbjct: 206 RFRSAVFTNLTPEHLDFHETMEEYAAAKRLLFSRLT-DDGFAVLNADDPQAG-------- 256

Query: 263 AGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTIS---VEGKDFDFLF--------- 304
                ++ G    +++         +C   ++ +  IS   VEG   +  F         
Sbjct: 257 ----FMAAGLPNDYLYCCSLSGNSSLCDSDHRFRAFISASTVEGSTAEVTFGAQSATMQV 312

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPGE+ V N L A  + I++G+D A  L  L +   VPGR E + +  R     VDYAH
Sbjct: 313 PLPGEYNVMNMLEAFAVGISLGLDPAKALAGLAESEAVPGRMERIWSADRSRCGVVDYAH 372

Query: 365 TSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++L+  L+ +R +T    ++ VVFGCGG+RD+ KRP MG+IA +LAD  I+T DNPR 
Sbjct: 373 TPDALQKALETLRAVTPSGSKLSVVFGCGGNRDRKKRPEMGRIAAELADRVILTSDNPRD 432

Query: 423 EDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           E+PE I  E+  G+ G   +   +R EAIR A+E L   D+L+VAGKGHE
Sbjct: 433 ENPELILDEVEAGMAGRVHLRISDRAEAIRRAVEGLGTGDILLVAGKGHE 482


>gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
 gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
          Length = 499

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 245/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 31  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 91  VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 210

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 269 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 387

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+  + E+     
Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 446

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 447 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 480


>gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 495

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 171/471 (36%), Positives = 247/471 (52%), Gaps = 38/471 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  DSR I+ G +FV I G   D H FIP     GA A++       Q  +  + +
Sbjct: 24  EILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLT------QRENVDVPA 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +L V +    L +     Y  +P     ++ +TGT+GK++ +  V+ I + +G    
Sbjct: 78  GISVLRVPDLNAALDIIVPYFY-DYPARSMRVVGITGTNGKTTTSYLVRAILRAAGR--- 133

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI    +D       TTP  + + + L+ + ++G+  V +E SSH LDQ R+ G
Sbjct: 134 RVGLVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVM 257
           I+     FTNL +DH+DYH+T + Y  AK RLFE +    +     A+I ADDA +  VM
Sbjct: 194 IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDA-AGPVM 252

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            RAH   C VLS G  Q   +  + +    +   + +    ++      + GEF VYN L
Sbjct: 253 -RAHTT-CPVLSYGVTQQAALTARDIRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVL 310

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMIL 373
            AAG   A GI   ++   LE    VPGRFE V    R G+   + VDYAHT + +E +L
Sbjct: 311 AAAGAARAEGIGYDVIRAALEGFTGVPGRFELV----RAGQDFSVIVDYAHTPDGMENVL 366

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R +T GRIIVVFGCGGDRD+ KRPIMG+I  ++AD+  +T DNPR+EDP  I  E+ 
Sbjct: 367 RTARAVTRGRIIVVFGCGGDRDRTKRPIMGRIGAEMADLVYITSDNPRTEDPAAILDEVE 426

Query: 434 HG-IPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            G +P    K      +R  AI  A+      D +V+ GKGHET  I+  G
Sbjct: 427 SGALPVLGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEG 477


>gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
 gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
          Length = 512

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 245/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+  + E+     
Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 459

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493


>gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
 gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
          Length = 499

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 244/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 31  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAG 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 91  VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 210

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 269 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 387

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 446

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 447 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 480


>gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
 gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
          Length = 499

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 244/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++  +     +     R+ 
Sbjct: 31  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAG 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 91  VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 210

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 269 VAKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 387

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+  + E+     
Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 446

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 447 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 480


>gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 489

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 258/488 (52%), Gaps = 46/488 (9%)

Query: 13  ELINQLSIF----PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           ELI  L+I     P+   +R+I+ ++ DSR ++ G +F+ I G K DGHLF  QAI  GA
Sbjct: 5   ELIKNLTIELQDGPL---DREISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A+       L +          +L   +TR  L+L A+  YG+  ++I  +AVTGT+GK
Sbjct: 62  VAV-------LAERQLDTGGKATLLTTPDTRSALALLAANYYGRPSKSIRVVAVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ I + +G  +  +G   + +    ++ + TTP  + +   ++    +   ++
Sbjct: 115 TTTTDLIKAILEEAGKKTAIMGTLYAQVGEIQREMQHTTPEALEIESFMALCREEKADYI 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPA 244
            +E SSH L   R+  I      FTNL +DH+D+HQ    Y  AK++LF+ +   K++ A
Sbjct: 175 VMEVSSHALQLQRVAEIDFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMIKEEKQNYA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II  DD +++E+ + A    CR   +  +  +             ++ I ++G  F   +
Sbjct: 235 IINIDDPWAEEIFQ-AATIPCRSYGIKKRSDY----------QAGELKIDLDGSSFRLHY 283

Query: 305 ---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     L G F +YNAL A    +  GID  L+   L ++  VPGRFE V      
Sbjct: 284 GDNSLMINMKLIGLFSIYNALAAISFALQEGIDPGLIQSALARVEGVPGRFEKVDCGQDF 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + LE IL+  R +   R+I VFGCGGDRD+ KRP+MG+IA   +D  +V
Sbjct: 344 A-VIVDYAHTPDGLENILQTSRELGKKRLICVFGCGGDRDRSKRPLMGEIAAKYSDFCVV 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           T DNPRSEDP  I AEII G+   +EK       +R EAIR AI +    D++V+AGKGH
Sbjct: 403 TSDNPRSEDPHAIIAEIIPGMDK-VEKSRYAIIVDRREAIRHAIHLARTGDLVVIAGKGH 461

Query: 470 ETVHIVTN 477
           E   +V +
Sbjct: 462 ENYQLVKD 469


>gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
 gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
          Length = 495

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 244/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 27  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 442

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 443 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 476


>gi|254994779|ref|ZP_05276969.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. Mississippi]
          Length = 472

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 242/448 (54%), Gaps = 24/448 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR ++ G+IFV +    E    F+P A+  GA+ IV  +A  L         ++ I
Sbjct: 17  ITADSRSVKPGFIFVCL---SEAAKGFVPDAVKAGAKFIVAGNAGGLPHVD-----HSQI 68

Query: 93  LVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++           AS  Y G  PE +  VTGT+GK+SVA F +QI   +G +   +G   
Sbjct: 69  IICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGTLG 128

Query: 152 TI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            I   ++       TTP  + L K LS L    V ++ +EASSHG+ Q RL G+K    +
Sbjct: 129 AIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASTAA 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL  DH+DYH + + Y+  K +LF E+L  E  A++ AD     E+ + A  AG  ++
Sbjct: 189 FTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELA--AGRNII 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G     + L ++        +T+ + G+  +D  FP+ G+FQ+ N L A  +  A G 
Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAVVAASGS 306

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386
               V   +++L    GR E +G      RI +DYAHTS++L+  L +++      + ++
Sbjct: 307 GHRDV--PIDRLAPPRGRMELIGD-----RIIIDYAHTSDALKHALTSLKWHGFPQKTVL 359

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPRSE+PE IR EI+      IE  +R 
Sbjct: 360 VFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDRG 419

Query: 447 EAIRTAIEMLNKQD-VLVVAGKGHETVH 473
           +AI  A+    + + VL++AGKGHET  
Sbjct: 420 DAIHYAVNFAIRNNYVLLIAGKGHETTQ 447


>gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 507

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 244/479 (50%), Gaps = 33/479 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR ++ G +FVA+ G KEDG  ++ +A+++GA A+V               S 
Sbjct: 24  VTGVTQDSRRVKPGDLFVAVPGTKEDGAQYVGEAVSRGAVAVVSEKPVG--------SSQ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P   V ++RK L+L A+  YG+  +   +L VTGT+GK++    ++ I   +  S+  I
Sbjct: 76  VPFFKVSSSRKALALIAANFYGRPAQQLTLLGVTGTNGKTTTTYLLEAISAAAYASTGVI 135

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     ++    +   TTP P+ L +    +   GV  V +E SSH L Q R+ G+   A
Sbjct: 136 GTLGYKVNGKVVETANTTPDPLELHRIFREMVDAGVETVVMEVSSHALVQERVHGLTFKA 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL RDH+DYH+  + YF AK RLF E L     A++  DD Y+  +          
Sbjct: 196 AAFTNLTRDHLDYHKDIEEYFQAKRRLFGENLSATGVAVVNGDDTYASRIYNELRGQKRM 255

Query: 267 VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                 QG   I    V       + T+     D      L G   + N L A G+ +  
Sbjct: 256 AWKFSRQGAGEISAADVSFSLQGIKATLKTPAGDIPVKSRLVGPHNLENILAATGVALGA 315

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITSGR 383
           GI    V   +E++  +PGR E V     G    + VDYAHT ++L+  L+  RT+  GR
Sbjct: 316 GIARRDVQTGIERMGGLPGRMERVENYMPGPAPAVLVDYAHTDDALKRALEASRTLAKGR 375

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           +IVVFGCGGDRD+GKRP+MG  A + AD+ +VT DNPR+EDP +I  ++  G+       
Sbjct: 376 VIVVFGCGGDRDKGKRPLMGTAAAEGADLVVVTSDNPRTEDPAEIIEQVTPGLEKGGLRR 435

Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                      G++   +R  AI TA+ +  + DV++VAGKGHET  IV  G +K   D
Sbjct: 436 ISAGKAKSGEKGYLVDADRRAAIETAVGLAREDDVVLVAGKGHETYQIV--GTEKRPFD 492


>gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
 gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
          Length = 512

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 243/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++  +     +     R+ 
Sbjct: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAG 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493


>gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 494

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 157/457 (34%), Positives = 238/457 (52%), Gaps = 16/457 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++  DSR I+ G IFVAIVG+  DG  FI +A+AQGA+A+V  ++      S      
Sbjct: 27  VEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVHGSVEWLDA 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V      LS  A R+Y      ++ VTGT+GK+++   + Q     G  S  +G 
Sbjct: 87  VPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146

Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           T   + F  + +    TT S I + + LS L+     + ++E SS GL Q R+  +    
Sbjct: 147 TG--NGFLDNLKTAANTTGSAIEIQRTLSELAEDNAVYTAMEISSLGLVQGRVKALDFEV 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
           G FTNL RDH+DYH T + Y  AK  LF +   K   A+I  DD   K  M    NA   
Sbjct: 205 GVFTNLSRDHLDYHGTMEEYALAKKSLFTQ--HKCKHAVINVDDEVGKAWMVDLSNAVAV 262

Query: 266 RVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +L + GYQ + +    V       ++             PL G+F   N LVA    ++
Sbjct: 263 SLLPLSGYQ-QSVWTSDVAYAETGIKLAFDGSWGQGQLSVPLIGQFNASNVLVAFATLLS 321

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GID   +++   +L  V GR E     ++  ++ VDYAHT ++LE  L  +R   SG++
Sbjct: 322 LGIDKQTLIDTAPQLQPVIGRMELFQVPNKA-KVVVDYAHTPDALEKALAALRVHCSGKL 380

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFI 440
             +FGCGGDRD GKRP+M   A   AD  I++DDNPRSEDP  I  +++ G+      F+
Sbjct: 381 WAIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPEAAFV 440

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           E  +R +A++ A+E     D++++AGKGHE   ++ +
Sbjct: 441 EH-DRYQAVKFALEQAGNNDIILLAGKGHEDYQVLKD 476


>gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
 gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
          Length = 492

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 168/442 (38%), Positives = 238/442 (53%), Gaps = 18/442 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G IFVA+ G + DG  +I QA+AQGA A+V++ A    + S    S++ I+ V
Sbjct: 33  DSRKVGEGDIFVALPGVQRDGRDYIKQALAQGA-ALVLAEANDF-NISTDADSSSRIMRV 90

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152
            +    L   A   YG   +   ++AVTGT+GK+SV  FV Q+ +  G+ +  +G   S 
Sbjct: 91  PDLSAELPSLAKDFYGDPSQEMALVAVTGTNGKTSVVEFVGQLLRALGVEAGCVGTLGSR 150

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + +   D   TTP  + +   L+    QG+ HV++EASSH L Q RL  + L  G FTNL
Sbjct: 151 LEAAPADAMNTTPDVLTINHQLADWQHQGIKHVALEASSHALHQGRLASLSLHTGVFTNL 210

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            RDH+DYH     Y  AK+ LF     K   AI  ADD  + +V+  A   G   + +  
Sbjct: 211 TRDHLDYHGNAADYAAAKLSLFNTFNLKR--AIFNADDPVASQVLAVA---GASAIGITL 265

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           +G   H++   AI + + + + ++      +    L G F  +N + A      +G D  
Sbjct: 266 EGAEAHVQ--VAIRSMRPMLLEIQSPWGAAEINLALSGRFNAFNVVAAIVAVTGLGHDFH 323

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            V    E L  VPGR E +  +  G R+  VDYAHT ++LE  L+ +R  T GR+ VVFG
Sbjct: 324 RVCAAAESLKPVPGRMERILMS--GNRLAVVDYAHTPDALESALQTLRGETKGRLWVVFG 381

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEA 448
           CGGDRD GKR +MG+ A   AD  +VT DNPR E PEKI  ++I G     E   +R EA
Sbjct: 382 CGGDRDSGKRSLMGRSAARWADHIVVTSDNPRGEMPEKIIEDVISGCGNQAEVVVDRAEA 441

Query: 449 IRTAIEMLNKQDVLVVAGKGHE 470
           IR A+ +    D ++VAGKGHE
Sbjct: 442 IRHALALAESGDTVLVAGKGHE 463


>gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
 gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
          Length = 512

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 243/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++  +     +     R+ 
Sbjct: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAG 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 104 VPVIYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493


>gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 482

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 267/477 (55%), Gaps = 32/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V  DSR  +  ++F+AI G K DG L++ +AI  GA A+V        D   +    
Sbjct: 22  ISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNGAVAVVT-------DRDISEYPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             +++V++ R  ++  AS  Y        ++ +TGT+GK+SV   ++ I ++    + ++
Sbjct: 75  VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKTSVTYMLKAILEQQ---NNKV 131

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D  +    TTP  + L +  S + ++GV +V +E SSH L  HR+D   
Sbjct: 132 GLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVMEVSSHSLALHRVDSCD 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+H++ + Y   K +LF+  + K++ ++I  DD YS  +++ +   
Sbjct: 192 FDIAVFTNLSQDHLDFHESMEEYAKTKSKLFK--MAKKA-SVINIDDKYSSMMIESSKG- 247

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +VL+ G +   ++  K++    +  +  + ++ K  +    +PG F VYNAL A  + 
Sbjct: 248 --KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPGLFSVYNALAAITVA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI    V E L  +  V GRFE V T  R   +++DYAHT + +  I++ ++   +G
Sbjct: 306 DFLGIPLRSVREALSHV-TVKGRFEPVET-GRDFYVFIDYAHTPDGIRNIMEALKEYEAG 363

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R I+VFG GGDRD+ KRP+MG++A   AD  I+T DNPRSE+P++I A+I  GI      
Sbjct: 364 RKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNPRSENPKEIIAQIEEGIKKTNCP 423

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREILG 494
           ++   +R EAIR A+    K DV+++AGKGHET  I+  G+K +  D  +I++EIL 
Sbjct: 424 YVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQII--GDKVIPFDEREIVKEILA 478


>gi|89891771|ref|ZP_01203273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
 gi|89515926|gb|EAS18591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
          Length = 488

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 168/504 (33%), Positives = 267/504 (52%), Gaps = 37/504 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DL+YK   EL+    I P    +  + +V  DSR I+ G +F+A+ G   DGH FI +
Sbjct: 4   LKDLLYKVSLELV----IGPT---DIDVEQVQFDSRAIRKGDVFIALKGTAVDGHQFIEK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA A+++     L D+ A    +   + VDN  K L+L  +  Y    +++  V  
Sbjct: 57  AVASGAVAVLLED---LPDYQA---EHVTYIQVDNAHKALALIGANYYDNPSKDLKLVGV 110

Query: 123 TSGKSSVA--SFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKALSY 176
           T         S + Q+ ++ G   F+ G  ST+           + TTP P+ +   L+ 
Sbjct: 111 TGTNGKTTTTSLLYQLFKKLG---FKTGLISTVEILIDGKVIPTKHTTPDPVTINSHLAA 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV +  +E SSHG+DQ R+ G+  + G FTNL  DH+DYH T   Y + K R F +
Sbjct: 168 MRDAGVDYCFMEVSSHGIDQQRITGLHFVGGMFTNLTHDHLDYHNTFAEYRDVKKRFF-D 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +LP ++ A+   DD   + +++   N   R L  GY  K     +   I N Q   + ++
Sbjct: 227 MLPSDAFALTNRDDKNGEFMLQ---NTKARKL--GYALKTYTDYRAQIIEN-QFGGLQLK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +    + GEF  YN L   G  I +G++S  VLE + +L  V GRF++  T ++  
Sbjct: 281 VNNQELWTKMIGEFNAYNVLAIYGCAIELGLESTEVLEAISQLDGVSGRFQYFTTAAQHI 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L+ I  I +   ++I V GCGGDRD+ KRP+M  IA  L+D+ I
Sbjct: 341 TAIVDYAHTPDALKNVLETINAIRTRNEKLITVVGCGGDRDKSKRPVMANIAASLSDLII 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+E+P+ I  ++  G+     K      +R  AI+TA++M  + D++++AGKGH
Sbjct: 401 FTSDNPRTENPDAILKDMEAGVEAIDFKKTLTVTDRKNAIKTAVQMAQQNDIILIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + NG +    D  I+ ++L
Sbjct: 461 ETYQEI-NGVRSDFNDRLIVADLL 483


>gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
 gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 171/477 (35%), Positives = 243/477 (50%), Gaps = 26/477 (5%)

Query: 11  FPELINQLSIFPMQWRER---KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL N L  +  +W+     +I  +  DSR + +G +F  I G   DGH F  QA+ +G
Sbjct: 4   LSELTNVLRSY--EWKNEGDPEITHIEMDSREVVSGTLFFCIKGYTVDGHDFAKQAVEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++                  P ++V +T++ ++  A+  YG      N++ VTGT+G
Sbjct: 62  AVALIAEREVK--------GVEVPTIIVQDTKRTMARLANLFYGDPTSKMNLIGVTGTNG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++V   ++QI   +   +  IG   T I       + TTP  I L K    +    V  
Sbjct: 114 KTTVTHLLEQIMNDANKRTGLIGTMYTKIGDVELKTQNTTPESITLQKRFKEMVDADVET 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
             +E SSH L   R+ G       FTNL  DH+DYH+T +AY  AK  LF +L     + 
Sbjct: 174 ALMEVSSHALHLGRVRGCDFDIAVFTNLTPDHLDYHETMEAYLFAKGLLFAQLGNRFTEG 233

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF 300
             A++  DD  + E++K        VL+ G + K  I  + +         T+    +  
Sbjct: 234 KVAVLNRDDEAADELLKMT---TVDVLTYGVENKADIMAEDIEITARGTTFTLKAGTESI 290

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G F VYNAL AA   IA GI    + + LE +H V GRFE V    +   + V
Sbjct: 291 EIEMKLIGMFSVYNALAAASAAIASGIPLEQIKKSLEAVHGVAGRFEPVDA-GQDYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHTS+SLE +L  +R    G+I VV GCGGDRD+ KRP+M +IA   AD AI T DNP
Sbjct: 350 DYAHTSDSLENVLTTVREFAKGKISVVVGCGGDRDRTKRPVMAEIATKYADNAIFTSDNP 409

Query: 421 RSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP++I  ++ HG+    +    +R EAI  AI   NK D+LV+AGKGHET  I+
Sbjct: 410 RSEDPKQILDDMTHGLESSNYTVCVDRKEAIYQAINDANKDDILVIAGKGHETYQII 466


>gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 492

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 267/477 (55%), Gaps = 32/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V  DSR  +  ++F+AI G K DG L++ +AI  GA A+V        D   +    
Sbjct: 32  ISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNGAVAVVT-------DRDISEYPG 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             +++V++ R  ++  AS  Y        ++ +TGT+GK+SV   ++ I ++    + ++
Sbjct: 85  VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKTSVTYMLKAILEQQ---NNKV 141

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D  +    TTP  + L +  S + ++GV +V +E SSH L  HR+D   
Sbjct: 142 GLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVMEVSSHSLALHRVDSCD 201

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+H++ + Y   K +LF+  + K++ ++I  DD YS  +++ +   
Sbjct: 202 FDIAVFTNLSQDHLDFHESMEEYAKTKSKLFK--MAKKA-SVINIDDKYSSMMIESSKG- 257

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +VL+ G +   ++  K++    +  +  + ++ K  +    +PG F VYNAL A  + 
Sbjct: 258 --KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPGLFSVYNALAAITVA 315

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI    V E L  +  V GRFE V T  R   +++DYAHT + +  I++ ++   +G
Sbjct: 316 DFLGIPLRSVREALSHV-TVKGRFEPVET-GRDFYVFIDYAHTPDGIRNIMEALKEYEAG 373

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R I+VFG GGDRD+ KRP+MG++A   AD  I+T DNPRSE+P++I A+I  GI      
Sbjct: 374 RKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNPRSENPKEIIAQIEEGIKKTNCP 433

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREILG 494
           ++   +R EAIR A+    K DV+++AGKGHET  I+  G+K +  D  +I++EIL 
Sbjct: 434 YVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQII--GDKVIPFDEREIVKEILA 488


>gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 531

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 164/507 (32%), Positives = 266/507 (52%), Gaps = 47/507 (9%)

Query: 9   KDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  +L++ L    +   E+  +  ++  S  + +G +FVA+ G + DGHL+I +AI +G
Sbjct: 10  KNLAQLLSGLKYLRIWGDEQVPVQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERG 69

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILV---VDNTRKFLSLFASRLYGKHPE---NILAVT 121
           A  +V+  A             TP +V   V +TR  L+  A+  Y  HP     ++ +T
Sbjct: 70  AAVVVLEDAVE----------PTPGVVCVQVPDTRLALAHMAAAFY-DHPSCNLTVVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT+GK++ +  ++ I Q SG     IG  +    S  + + +TTP  + L   L+ + + 
Sbjct: 119 GTNGKTTTSYLLEAIWQASGAQVGVIGTVNCRFGSQVRSSPVTTPESLDLQDLLAEMRAA 178

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V    +E SSH LD  R+  ++  AG FTNL +DH+DYH   ++YF  K RLF ELL  
Sbjct: 179 AVDCAIMEVSSHALDLKRVQAVRFAAGLFTNLSQDHLDYHGDMESYFAVKSRLFCELLTD 238

Query: 241 --ESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
             + P  A+I  DD + ++++ +       VL+ G+  G  I  + +   H   Q  +  
Sbjct: 239 CGDGPQLAVINRDDPWGQKLLPQTSPP---VLTYGFAAGADIRPEDITLTHQGIQARLHT 295

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D + PL G + +YN L A+G  + +GI    V+  L  +  V GR E V    + 
Sbjct: 296 PYGRLDIVSPLMGRYNLYNILAASGAALGLGISPEHVVTGLANITGVDGRLEPVAAPGQP 355

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE +L  ++ +   RII VFGCGGDRD+ KRP+MG++    +D+ I+
Sbjct: 356 -LVLVDYAHTPDALEKVLAALKALDFDRIITVFGCGGDRDRRKRPLMGQVVARGSDVVII 414

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNK 458
           T DNPR+E+P  I  +I+ G+                  G++   +R +AIR AI + N 
Sbjct: 415 TSDNPRTEEPLAIIEDILAGLREMNCPRLDVSEAREGHRGYLVIADRRQAIRQAIAIGNP 474

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +V+++AGKGHET  I+  G +++  D
Sbjct: 475 GEVILLAGKGHETYQIL--GTRRIHFD 499


>gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
 gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
          Length = 483

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 176/508 (34%), Positives = 266/508 (52%), Gaps = 40/508 (7%)

Query: 1   MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L+    P  +I + SI         I  V+ DSR I  G +F+A+ G + DGH F
Sbjct: 1   MKLNELLKNIKPVAVIGEQSI--------DIKGVNIDSRKIAEGHLFIAMKGTQVDGHRF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           IP+AI QGA+AI+       +D           + V++T       A+  YG   + +  
Sbjct: 53  IPKAIEQGAKAILC------EDMPEMKVEGVTYVKVESTEDAAGKVATLFYGDPSKKLKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK++VA+ +  + ++ G   ++ G  ST+ ++ +D  +    TTP PI L + 
Sbjct: 107 VGVTGTNGKTTVATLLYNMFRKMG---YKCGLLSTVCNYIEDEAIPADHTTPDPIELNEL 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  + + G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   
Sbjct: 164 LGRMVNTGCEYAFMECSSHAIAQKRISGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAF 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+E LPK + AI  ADD   K  M    N    V +   +       ++   H  + + +
Sbjct: 224 FDE-LPKGAFAITNADD---KNGMIMVQNTKATVKTYSTRSAADFKARILECHF-EGMYL 278

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++G +    F   G+F V N L   G    +G     +L  +  LH V GR E + +  
Sbjct: 279 DIDGHEVGVQF--IGKFNVSNLLTVYGAARMLGKQPEDILLVMSTLHSVSGRLEPIHS-P 335

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G    VDYAHT ++LE +LK I  + +  G++I V G GG+RD+GKRP+M + A+  +D
Sbjct: 336 EGYTAIVDYAHTPDALENVLKAIHEVLNGKGKLITVCGAGGNRDKGKRPLMAQEAVKQSD 395

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR E+P+ I  +++ G+        I   +R EAIRTA  M  K DV++VAG
Sbjct: 396 KVIITSDNPRFEEPQDIINDMLDGLNAQQLKKVISIVDRKEAIRTACMMAQKGDVILVAG 455

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHET   +  G K    D +I+  I G
Sbjct: 456 KGHETYQEI-KGVKYHFDDKEILNNIFG 482


>gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
          Length = 471

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 241/474 (50%), Gaps = 20/474 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVAIVG++ DG  +IPQAIAQG  AIV  +     D S       P++ +
Sbjct: 4   DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
            N  + LS  A + Y +      ++ VTGT+GK++ +  + Q  Q  G +S  +G     
Sbjct: 64  RNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTSQLLAQWSQALGETSAVMGTVGNG 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +         TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  FTNL
Sbjct: 124 LLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFTNL 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----L 268
            RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A        L
Sbjct: 184 SRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLSQLPQAVAVSMEGHL 241

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G++G ++   +V    N   +T      +      L G F V N LVA    +++G  
Sbjct: 242 PAGWKGPWLSASQVEYHDNGANITFGSSWGEGQIESRLMGAFNVSNLLVALSTLLSLGYP 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G++  VF
Sbjct: 302 LAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQLWCVF 360

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN---- 444
           GCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+   ++ G+    
Sbjct: 361 GCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAGHALAI 417

Query: 445 --RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    + DV+++AGKGHE   +V N     S    + R +LG++
Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVV 470


>gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter sp. X514]
 gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X514]
 gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 483

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 164/476 (34%), Positives = 265/476 (55%), Gaps = 32/476 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V  DSR  +  ++F+AI G K DG  ++ +AI  GA A+V      ++++       
Sbjct: 22  ISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAVAVVADR--EIKEYPGI---- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           T +LV D  R  ++  AS  Y        ++ VTGT+GK+SV   ++ I +R    + ++
Sbjct: 76  TTVLVED-ARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D  +    TTP  + L +  S + ++GV +V +E SSH L  +R+D  +
Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVDECE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+HQ  + Y   K +LF+  + K + ++I  DD YS  ++    ++
Sbjct: 192 FDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFK--MAKRA-SVINIDDKYSSMMI---ESS 245

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +VL+ G +   ++  K +    +  +  + +E K  +    +PG F VYNAL A  + 
Sbjct: 246 KAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLFNVYNALAAITVA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI    V E L ++  V GRFE V T  +   +++DYAHT + ++ I++ ++   +G
Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFEPVET-GKDFYVFIDYAHTPDGIQNIMEALKEYKTG 363

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R I++FG GGDRD+ KRP+MG++A   AD  I+T DNPRSEDP +I ++I  GI      
Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKTNCP 423

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
           ++   NR EAIR A+    K DV+++AGKGHET  I+  G K +  D  +I++EIL
Sbjct: 424 YVVIENRKEAIRYALTNAQKDDVIILAGKGHETYQII--GNKVIPFDEREIVKEIL 477


>gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580]
          Length = 488

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 174/492 (35%), Positives = 255/492 (51%), Gaps = 50/492 (10%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL  L+   K+ P    Q         +  I  +  DSR ++ G +FV I G   DGH 
Sbjct: 1   MKLTKLLTYLKNVPSYAGQ--------EDPDITSIEMDSREVKTGSLFVCIKGYTVDGHD 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           +  QA  +GA AIV             + ++ P++++ +T++ L++ +   YG+  + + 
Sbjct: 53  YARQAAEKGAAAIVAERE---------VDADVPVIIIRHTKRALAVLSDAFYGQPTKQLR 103

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
            + +TGT+GK+S +  V++I +++G  +  IG   T I     + + TTP  + L K   
Sbjct: 104 LIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFR 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  QGV    +E SSH L   R+ G      +FTNL +DH+DYH+T + Y +AK  LF 
Sbjct: 164 KMVDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFS 223

Query: 236 EL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +L      E+P  A++ ADD  S      A      +L+ G Q        V A    + 
Sbjct: 224 QLGGSFNHETPKWAVLNADDPASAYF---AQVTSAHLLTYGIQND----ADVMA----EN 272

Query: 291 VTISVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + ++ +G  FD +          PL G F VYN L AA + IA  I  A + E +E L  
Sbjct: 273 IKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKG 332

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GRFE V    +   + VDYAHT +SLE +L   R +T G++ VV GCGGDRD+ KRP 
Sbjct: 333 VRGRFELVDA-GQDFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPK 391

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459
           M KIA+DLAD  + T DNPRSE+P  I  ++  G+ G       NR +AI  AI    K 
Sbjct: 392 MAKIAVDLADEPVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKG 451

Query: 460 DVLVVAGKGHET 471
           DV+++AGKGHET
Sbjct: 452 DVVLIAGKGHET 463


>gi|58697149|ref|ZP_00372575.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536545|gb|EAL59906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
          Length = 423

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 157/422 (37%), Positives = 239/422 (56%), Gaps = 24/422 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-- 86
           +I  V+ + + I+ G++FV +    E   ++I Q ++ GA+AI+ S   + +  S  I  
Sbjct: 18  EIKGVTCNPKKIKEGYLFVCV---SERDRIYIDQILSCGAKAIIASDCIT-EALSLGIIP 73

Query: 87  -RSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            R     +   N ++  S   SR Y  K P+ + AVTGT+GK+SV  F +QI Q SG ++
Sbjct: 74  TRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQNSGYNA 133

Query: 145 FQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             IG   T  +  +    N LTTP    L   L  +S   V H+ +E+SSHG+DQ+R+ G
Sbjct: 134 ASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGIS---VEHLVLESSSHGIDQYRIHG 190

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +KL A +FTN  +DH+DYH++   Y   K RLF E+LP+   AI+ AD      ++K A 
Sbjct: 191 LKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGALLKIAE 250

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               +V++ G +G  I L +  +  N Q +T+ ++ + ++  FP+ G+FQ YN L A G+
Sbjct: 251 KRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGI 310

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G++   +   +EKL   PGR E V   +     +VDYAHT ++L+  L +++   +
Sbjct: 311 S---GLNYREIC--VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHIN 360

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            +II+VFGCGG+RDQ KR  MGKIA   AD  I+TDDN R EDP KIR +I+   P  +E
Sbjct: 361 KKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALE 420

Query: 442 KG 443
            G
Sbjct: 421 IG 422


>gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
 gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 489

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 163/466 (34%), Positives = 246/466 (52%), Gaps = 32/466 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  + +DSR IQ G +F+A  G + DG  +I +A+ + A A+     Y    ++ +I++ 
Sbjct: 23  IKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAAAVF----YEANQYNPSIQTK 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P++  +N +  +   A+R Y   P     I+ +TGT+GK+S A F+ Q  Q  G+    
Sbjct: 79  VPLIPFENLQHRIGEIAARFY-DDPSCEMEIIGITGTNGKTSCAQFIAQALQSQGIRCGV 137

Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG      + S  + +  TTP PI L +A + +  QG   +++E SSH L Q R++G++ 
Sbjct: 138 IGTLGYGFLGSLHKTSH-TTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRRVEGVQF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FT L RDH+DYH   + Y  AK  LF++  P     ++  DDA  K ++    +  
Sbjct: 197 DIAVFTQLSRDHLDYHGDMENYARAKELLFQQ--PGLHTGVVNCDDALGKRIIAHYRH-- 252

Query: 265 CRVLSVGYQGKFIHLKKVC-----AIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNAL 316
            ++  VGY    +   +V      AI    Q   V +     +  F  PL G F + N L
Sbjct: 253 -QLTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLFGRFNISNLL 311

Query: 317 -VAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            V + LC+  I  D AL+   L +L  VPGR + V +  R  +I VDYAHT ++LE  L 
Sbjct: 312 AVLSVLCLCEIPFDKALL--ELSQLRNVPGRMQVVDSQ-RQPQIIVDYAHTPDALEKALT 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I VFGCGGDRD+GKRP M  +A   AD  I+T+DNPR+E P  I  +I  
Sbjct: 369 ALREHCQGRLICVFGCGGDRDRGKRPQMAAVAEQHADQIILTNDNPRTESPLTIIQDIQA 428

Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G       + K +R EAIR A++M    D++++AGKGHET   + +
Sbjct: 429 GFKNKNAVLVKLDRAEAIRYAVQMAAVNDIVLIAGKGHETTQTIAD 474


>gi|218886062|ref|YP_002435383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757016|gb|ACL07915.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 494

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 163/483 (33%), Positives = 247/483 (51%), Gaps = 29/483 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV------VSSAYSLQDFSAT 85
           E+ +DSR +  G +FVA+ G   +G      A   GA+ IV        +   L      
Sbjct: 19  EIRTDSRKVGRGDVFVAVPGVAANG-----GAGVDGADFIVKAWAAGAGAVVCLPARVEA 73

Query: 86  IRSNTP----ILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQR 139
             ++ P    +   D+ R  + L     YG    P  ++AVTGT+GK+++   +  +   
Sbjct: 74  ALADAPEGAVVAAHDDPRVAIGLLGQARYGTDALPFPVVAVTGTNGKTTITYLLDHVFSA 133

Query: 140 SGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G  +  +G  S     FA D  LTTP  I     L  +   GV    +E SSH LDQ R
Sbjct: 134 LGRRAGVLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALMEVSSHALDQRR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + GI+      TNL +DH+DYH   + Y+ AK RLF EL   +    + ADDA+ + ++ 
Sbjct: 194 VAGIRFAGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAVNADDAWGRRLLG 253

Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              +A    L  G      +F+H + V    +   + ++ EG+ ++    L G     N 
Sbjct: 254 EVPHAIGFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELSSHLVGAHNASNL 313

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +C+ +G+ +      L     VPGR E +  N RG  I+VDYAHT ++LE +L+ 
Sbjct: 314 LAVQAVCLGMGL-APQDFASLAGFTGVPGRLERI-VNPRGLDIFVDYAHTPDALENVLRA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R +   RI+ VFGCGG+RD+ KRP+MG+     AD+A++T DNPR EDPE I A+++ G
Sbjct: 372 LRAVGFSRIVTVFGCGGNRDRTKRPLMGQAVARHADVAVLTSDNPRHEDPEAIMADVLPG 431

Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIRE 491
           + G    +   +R  AI  A+ +L   DVL+VAGKGHE+   +  G++K+   D  +IRE
Sbjct: 432 LAGARKVVSDADRARAIGKALALLQPGDVLLVAGKGHESYQQI--GDRKVPYSDQQVIRE 489

Query: 492 ILG 494
           ILG
Sbjct: 490 ILG 492


>gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
 gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
          Length = 487

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 253/482 (52%), Gaps = 41/482 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N +  DSR +  G +FVAI G   DGH +I +AIA GA+ I+  +         TI  +
Sbjct: 24  VNSICFDSRIVTMGDVFVAIKGTITDGHEYIEKAIALGAKTIICET------MPVTIVDD 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + VDN  K L++ AS  Y    +N+  + VTGT+GK++++S + Q+ +++G   F++
Sbjct: 78  VTYVEVDNGNKALAIMASNFYDNPSKNLKLVGVTGTNGKTTISSLLYQLFKKAG---FKV 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  STI     D       TTP  + +   L  ++  GV    +E SSHG+ Q R +G+ 
Sbjct: 135 GLISTIKIMVDDTEYKTSHTTPDALTINHHLKLMNDVGVEFCFMEVSSHGIHQKRTEGLA 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL  DH+DYH+T   Y + K  LF+ L PK++  +   DD   K  +    N 
Sbjct: 195 FEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDNL-PKKAFVLTNVDD---KNGLVMLQNT 250

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVA 318
             R        K+ +  K  A +  Q +     G+       +    L G+F  YN L  
Sbjct: 251 KAR--------KYTYALKTYADYKAQILENQFNGQLLKIDGSEVWSKLIGDFNAYNMLAI 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G    +G++   +L  L +L  V GRF++  +  R   I VDYAHT ++L+ +L  I  
Sbjct: 303 YGTAQLLGLEKLEILRLLSELENVDGRFQYFISKERITAI-VDYAHTPDALKNVLDTINK 361

Query: 379 ITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---- 432
           + +G   +I V GCGGDRD+ KRP+MG IA +++   I T DNPR+E+P++I  EI    
Sbjct: 362 LRTGNENVITVVGCGGDRDRSKRPVMGHIASEMSTTTIFTSDNPRTENPDEILKEIEAGV 421

Query: 433 -IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            +  +   +   +R +AI+TA ++ N  D++++AGKGHET   + NG +    D ++++ 
Sbjct: 422 EVQNVRKTLTIESREQAIKTACQLANSNDIILIAGKGHETYQEI-NGVRAHFDDYEMVQN 480

Query: 492 IL 493
           +L
Sbjct: 481 LL 482


>gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 483

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 164/476 (34%), Positives = 265/476 (55%), Gaps = 32/476 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V  DSR  +  ++F+AI G K DG  ++ +AI  GA A+V      ++++       
Sbjct: 22  ISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAVAVVADR--EIKEYPGI---- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           T +LV D  R  ++  AS  Y        ++ VTGT+GK+SV   ++ I +R    + ++
Sbjct: 76  TTVLVED-ARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D  +    TTP  + L +  S + ++GV +V +E SSH L  +R+D  +
Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVDECE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+HQ  + Y   K +LF+  + K + ++I  DD YS  ++    ++
Sbjct: 192 FDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFK--MAKRA-SVINIDDKYSSMMI---ESS 245

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +VL+ G +   ++  K +    +  +  + +E K  +    +PG F VYNAL A  + 
Sbjct: 246 KAKVLTYGVKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLFNVYNALAAITVA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI    V E L ++  V GRFE V T  +   +++DYAHT + ++ I++ ++   +G
Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFEPVET-GKDFYVFIDYAHTPDGIQNIMEALKEYKTG 363

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R I++FG GGDRD+ KRP+MG++A   AD  I+T DNPRSEDP +I ++I  GI      
Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKTNCP 423

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
           ++   NR EAIR A+    K DV+++AGKGHET  I+  G K +  D  +I++EIL
Sbjct: 424 YVVIENRKEAIRYALTNAQKDDVIILAGKGHETYQII--GNKVIPFDEREIVKEIL 477


>gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. WCH70]
 gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70]
          Length = 490

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 171/506 (33%), Positives = 258/506 (50%), Gaps = 53/506 (10%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKLQ L+    DF   + +            I  +  DSR ++ G +F+ I G   DGH 
Sbjct: 1   MKLQTLLSYLHDFTTYVGE---------NPTITSIEMDSRQVKNGALFICIKGFTVDGHD 51

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPEN 116
           F  QA+  GA A++      +         + P++VV ++R+ +++ A   YG+  H  +
Sbjct: 52  FAKQAVENGAVAVIAERPLDV---------DVPVIVVRDSRRAMAMLADAFYGQPTHRLH 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK++    ++ I +++   +  IG     I       + TTP  + L +   
Sbjct: 103 LIGVTGTNGKTTTTHIIEHIARKANKKTGLIGTVHIKIGDHTYPTKNTTPESLLLQRTFK 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  +GV    +E SSH L   R+ G       FTNL +DH+DYH T + Y NAK  LF 
Sbjct: 163 QMVDEGVDVAVMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFA 222

Query: 236 EL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +L      E P  A++  DD  SK      H     V++ G +     + K        +
Sbjct: 223 QLGNRYDHERPKFAVLNNDDPASKYY---KHMTAASVITYGIETDSDIMAK--------K 271

Query: 291 VTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + I   G  FD + P         L G F VYN L A   C+  GI   +++E +E++  
Sbjct: 272 IDIVPSGMSFDLITPNGTVRVKTRLIGLFNVYNLLAAVSACLVSGIPLPVIVEAIEEISG 331

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GRFE V    +   + VDYAHT +SLE +LK IR     ++ VV GCGGDRD+ KRP+
Sbjct: 332 VAGRFETVD-EGQNFTVIVDYAHTPDSLENVLKTIRQFAQKKVYVVVGCGGDRDRTKRPL 390

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQ 459
           M K A+  AD+AI T DNPRSEDPE+I  ++  G+PG  ++   +R EAI  AIE   + 
Sbjct: 391 MAKTAVKYADVAIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEG 450

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVD 485
           D++++AGKGHET  I+  G++ +  D
Sbjct: 451 DIILIAGKGHETYQII--GDRVIDFD 474


>gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
 gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
          Length = 512

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 242/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++  +     +     R+ 
Sbjct: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHLNGWVEYRAG 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  + V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 282 VAKPNTAQAIWARHVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493


>gi|148284402|ref|YP_001248492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
 gi|146739841|emb|CAM79765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
          Length = 489

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 249/466 (53%), Gaps = 29/466 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  I  ++  ++  +   IF A+ G    G+ FI  A+A GA  I+   A+        
Sbjct: 11  KKLNIRNIAITAQSAEPNQIFFALPGISRHGNDFIDIALANGASLIITDQAH-------- 62

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           I S + ++VV N    +    + LY K P+ ++AVTGT GK+SV ++ QQ+C  +G  + 
Sbjct: 63  ITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAA 122

Query: 146 QIGPTSTISSFAQDNR-----------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            IG    I++    N+            TT S I     L  L++ G+  V++EASSHGL
Sbjct: 123 SIGTLGVITTNDHLNKRLNQNKTKPECATTMSYIQTRYLLHQLATNGINFVALEASSHGL 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYS 253
           DQ+RL  IK  A +FT+  RDH+DYH+T   Y +AK++LF+E +     AI+  + +  S
Sbjct: 183 DQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNINELS 242

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               K     G ++LSV  QG  I +  V +  N Q+V    +  D+ F   + G   + 
Sbjct: 243 IIQSKITDEFGLKLLSVEQQGD-IQIINVQSSLNGQKVHFRYKNSDYKFEVLVIGRVHIT 301

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEM 371
           N L+A  L +  G DSA ++  L  L  + GR E +    + G  Y  VDYA T N+L  
Sbjct: 302 NILIALLLAVNAGFDSAKLIPLLSNLKPIKGRMEKI----QFGNCYAFVDYALTPNALAT 357

Query: 372 ILKNIRTITS-GRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +L  +RT+ S GR+I +FG   +RD   +R  MG +A  L+D+ IVTD +  +EDP  IR
Sbjct: 358 MLTELRTLNSKGRLITIFGGSENRDAIARRMQMGIVASKLSDLVIVTDQDSGNEDPAAIR 417

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            EI+   P  IE  NR EAI+ AI ++   D+L++AGKGHET  ++
Sbjct: 418 KEILQVAPSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVL 463


>gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 494

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 247/456 (54%), Gaps = 15/456 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRS 88
           I  +  DSR I+ G  FVAI G+  DG  FI  AI QGA AI+  +   ++      + S
Sbjct: 27  IQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAAIQQGANAIIAEAGEQNVHGKVEQLGS 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            + + + D ++K LS  ASRL       ++AVTGT+GK+++   + Q  + SG  +  +G
Sbjct: 87  VSVVYIADLSQK-LSQLASRLQPLSYNQLIAVTGTNGKTTITQLIAQWLELSGQRAAVLG 145

Query: 149 PTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T    + S       TT + + + + LS L  QG  + ++E SSHGL Q+R+  +    
Sbjct: 146 TTGNGFLESLTPALN-TTGNALEIQQTLSELEDQGAQYTAMEISSHGLVQNRVKALSFSV 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G F+NL RDH+DYH T + Y  AK+ LF   +   + A+I  DD      ++   N    
Sbjct: 205 GVFSNLSRDHLDYHGTMEEYARAKLSLFT--VHDCAKAVINIDDTVGASWVELLDNCIPV 262

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIA 324
            LS    GK +   +V   +++  +T+S  G+  +  F  PL GEF   N +VA    ++
Sbjct: 263 SLSPIQTGKGVFATQVQ--YSEAGITLSFSGQYGEGRFTVPLIGEFNASNVMVAFATLLS 320

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GID  +++E   +L  V GR E      +  ++ VDYAHT ++LE  L  ++   +GR+
Sbjct: 321 LGIDKQILVESASQLKPVLGRMELFHAQGKA-KVVVDYAHTPDALEKALLALKVHCNGRL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441
             +FGCGGDRD GKRP+M  I   LAD+ I+TDDNPRSE P  I  +++ G+      I 
Sbjct: 380 WAIFGCGGDRDTGKRPMMASIGEKLADVVILTDDNPRSESPSAIVKDMLAGMASPENAIV 439

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + +R  A+  A++  +  D++++AGKGHE   ++ N
Sbjct: 440 EHDRYNALVHALKHSSGDDIILIAGKGHEDYQVLAN 475


>gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
 gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
          Length = 488

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 174/492 (35%), Positives = 255/492 (51%), Gaps = 50/492 (10%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL  L+   K+ P    Q         +  I  +  DSR ++ G +FV I G   DGH 
Sbjct: 1   MKLTKLLTYLKNAPSYAGQ--------EDPDITSIEMDSREVKTGSLFVCIKGYTVDGHD 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           +  QA  +GA AIV             + ++ P++++ +T++ L++ +   YG+  + + 
Sbjct: 53  YARQAAEKGAAAIVAERE---------VDADVPVIIIRHTKRALAVLSDAFYGQPTKQLR 103

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
            + +TGT+GK+S +  V++I +++G  +  IG   T I     + + TTP  + L K   
Sbjct: 104 LIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFR 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  QGV    +E SSH L   R+ G      +FTNL +DH+DYH+T + Y +AK  LF 
Sbjct: 164 KMVDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFS 223

Query: 236 EL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +L      E+P  A++ ADD  S      A      +L+ G Q        V A    + 
Sbjct: 224 QLGGSFNHETPKWAVLNADDPASAYF---AQVTSAHLLTYGIQND----ADVMA----EN 272

Query: 291 VTISVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + ++ +G  FD +          PL G F VYN L AA + IA  I  A + E +E L  
Sbjct: 273 IKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKG 332

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GRFE V    +   + VDYAHT +SLE +L   R +T G++ VV GCGGDRD+ KRP 
Sbjct: 333 VRGRFELVDA-GQDFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPK 391

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459
           M KIA+DLAD  + T DNPRSE+P  I  ++  G+ G       NR +AI  AI    K 
Sbjct: 392 MAKIAVDLADEPVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKG 451

Query: 460 DVLVVAGKGHET 471
           DV+++AGKGHET
Sbjct: 452 DVVLIAGKGHET 463


>gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
 gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
          Length = 512

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 243/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++  +     +     R+ 
Sbjct: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   +  N
Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVQAN 493


>gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
 gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
          Length = 512

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 243/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++  +     +     R+ 
Sbjct: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHINGWVEYRAG 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHEAAVMGT 163

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHTCQN--AIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 342 EKNALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+  + E+     
Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 459

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493


>gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
 gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
          Length = 483

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 258/478 (53%), Gaps = 31/478 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I+AG +FVAI G + DGH FI +AI  GA+A++       ++    +  
Sbjct: 22  EITGVNIDSRRIKAGHLFVAIRGTQVDGHQFIDKAIELGADAVLC------EELPEKLSD 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   + V++T   +   A+  YG   H   ++ VTGT+GK+++A+ +  + ++ G   ++
Sbjct: 76  HVTYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTIATLLYNMFRKFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L + L+ +   G  +  +E SSH + Q R+ G+
Sbjct: 133 VGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G FTNL RDH+DYH+T + Y NAK   F+  LPK++ AI  ADD  +  +M +   
Sbjct: 193 KFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDG-LPKDAFAITNADDK-NGMIMVQNTK 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  +  S+     F      C     + + + ++G++    F   G+F V N L   G  
Sbjct: 251 ATVKTYSIRSMADFRARILECHF---EGMYLEIDGREVGVQF--IGKFNVSNLLAVYGAA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +G     +L  L  LH V GR E + +   G    VDYAHT ++L  +L  I  +  G
Sbjct: 306 IMLGKKPEDILLVLSTLHSVSGRLEPIHS-PEGFTAIVDYAHTPDALANVLNAIHEVLDG 364

Query: 383 R--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
           +  +I V G GG+RD+GKRP+M + A+  +D  I+T DNPR EDP++I  E++ G+    
Sbjct: 365 KGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVIITSDNPRFEDPQEIINEMLAGLNEQQ 424

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               I   +R EAIRTA  M  K DV++VAGKGHE    +  G K    D +++ EI 
Sbjct: 425 MRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHENYQEI-KGVKHHFDDKEVLHEIF 481


>gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 490

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 166/503 (33%), Positives = 258/503 (51%), Gaps = 49/503 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++  D  EL+  L  F +Q  E+ I+   +  DSR ++ G +F+ I G   DGH F   A
Sbjct: 1   MVGMDLRELLTHLHDF-VQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121
           + +GA AI+      ++     ++S         T++ +++ A   Y +  +  +++ VT
Sbjct: 60  VEKGAVAILAEKPVDVEVPVVRVKS---------TKRAMAVLADAFYNQPTQKMHLIGVT 110

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT+GK+++   ++ I +     +  IG     I   + D + TTP  + L K    +  +
Sbjct: 111 GTNGKTTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEE 170

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--- 237
            V    +E SSH LD  R+ G       F+NL +DH+DYH T + Y  AK  LF +L   
Sbjct: 171 NVEVAMMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNA 230

Query: 238 ----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                PK   A++ ADDA ++E +K   N    V++ G       + +   I     + I
Sbjct: 231 YNHNRPK--FAVLNADDAATEEYIK---NTAATVITYG-------IDRESDI-RATNIQI 277

Query: 294 SVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +  G  FD   P         L G+F VYN L A   C+  GI  ++++E ++ L  V G
Sbjct: 278 TNSGTTFDLTTPTETVRVGMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSG 337

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           RFE V    +   + VDYAHT +SLE +LK ++      I V+ GCGGDRD+ KRPIM +
Sbjct: 338 RFEVVDA-EQDFTVIVDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMAR 396

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           IA + +  AI+T DNPRSEDP  I  ++  G+    ++   +R EAIR A+E ++  DV+
Sbjct: 397 IAAEYSTQAILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVETVHADDVI 456

Query: 463 VVAGKGHETVHIVTNGEKKMSVD 485
           V+AGKGHET  I+  G+K    D
Sbjct: 457 VIAGKGHETYQII--GKKVFDFD 477


>gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
 gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
          Length = 512

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 242/454 (53%), Gaps = 10/454 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++  +     +     R+ 
Sbjct: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAG 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H    + VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A G  +
Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    KL  V GR E      +  ++ VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+       IE  
Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493


>gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria innocua Clip11262]
 gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262]
          Length = 491

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 237/467 (50%), Gaps = 41/467 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N+++ DSR +Q G +F+ I G   DGH F  +A+  GA AI+      +         
Sbjct: 22  EVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLGAVAIIAEKQLDV--------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P+L V ++++ +++ A   YG   +   ++ +TGT+GK++V+  V+QI + +G  +  
Sbjct: 73  SVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGL 132

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I     + + TTP  + L +    +   GV+   +E SSH L Q R+ G    
Sbjct: 133 IGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGRVYGSDYD 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260
              F NL +DH+DYH T + Y  AK  LF +L     L     A++ ADD   KE ++  
Sbjct: 193 VAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADD---KESVRMQ 249

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311
                 +++ G         K  A  +   + I+  G  FD   P         + G F 
Sbjct: 250 TATAAHIITFGI--------KEPADFSASNIQITSHGSTFDLKTPVGDFALKIKMIGNFS 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYN L A     A+ I     +  +E +  V GRFE V    +   + VDY+HT +SL  
Sbjct: 302 VYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNA-GQDFPVIVDYSHTPDSLLN 360

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I T DNPRSEDP  I  +
Sbjct: 361 VLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIED 420

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I G+PG   ++   NR +AIR A+ M    DV+++AGKGHE   ++
Sbjct: 421 MIQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGHEDYQVI 467


>gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
 gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
          Length = 494

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 231/458 (50%), Gaps = 23/458 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR + +G +F+ I G   DGH F  QA A GA AI+             I  
Sbjct: 25  EITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGATAILAEKE---------IDV 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P++ V ++++ +++ A R YG   + +  + VTGT+GK++V   V+QI + +G  +  
Sbjct: 76  SIPVVYVKDSKRAMAILADRFYGSPSQKMKMIGVTGTNGKTTVTHLVEQIVRDAGSETGL 135

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I     + + TTP  + L +    + +  V  V++E SSH L Q R  G    
Sbjct: 136 IGTMYRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVSSHALVQGRTYGTDFD 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRA 260
              FTNL +DH+DYH+T + Y  AK  LF +L      E P  AII  DD  S+  MK A
Sbjct: 196 IAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKYAIINQDDPVSQR-MKTA 254

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A      +     F     V    +     +     DFD    + G+F +YN L A  
Sbjct: 255 TAAPVITYGIDKAADF-GATDVMVTSSGTTFKLHTPDGDFDVRIKMIGKFSIYNCLAALA 313

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              A+ I     +  LEK+  V GRFE V    +   + VDYAHT + L  +L+ I    
Sbjct: 314 TSYALEIPIHQAITSLEKVQGVAGRFEIVDAG-QDFTVIVDYAHTPDGLLNVLETIEEFK 372

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
             R+  + GCGGDRD+GKRP M KIA+D A   + T DNPRSEDPE I  +++ G+P   
Sbjct: 373 RSRVFAIVGCGGDRDKGKRPQMAKIAIDYATDPVFTSDNPRSEDPEAIIQDMLAGLPANA 432

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +  + +R EAI  A+      DV+++AGKGHET  I+
Sbjct: 433 VYQVRTDRKEAITYAVNEAQAGDVILIAGKGHETYQII 470


>gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 490

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 164/467 (35%), Positives = 247/467 (52%), Gaps = 39/467 (8%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +W    I  +S  S+ ++   IF A  G K DGH FI +AI +GA  +V      L  
Sbjct: 21  PQKW----IKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKKPVL-- 74

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ 138
               +  N   ++V N+   L   +S  Y  HP     ++ +TGT+GK+SVA+ +  +  
Sbjct: 75  ----LHKNITYVIVKNSMDALGTISSNFYD-HPTKKIKLVGITGTNGKTSVATILHHLFY 129

Query: 139 RSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           + G  S  I  T  I   +Q+   + TTPS + + K L+    +G  +  +E SSHG+ Q
Sbjct: 130 KMGEKSILIS-TMGIKILSQEFPTKHTTPSIVDINKYLNLSIQKGCKYAFMEVSSHGIHQ 188

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+ G+    G  TN+  DH+DYH++ + Y + K   FE  LPK + A+I +DD  S E+
Sbjct: 189 KRIAGLLFTGGVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSHEI 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +K   N   ++   G + K  +  K+    IH  Q   + ++G  F F F L GEF V N
Sbjct: 249 IK---NVLAKIYFYGLKKKTDYRIKIMKKNIHGNQ---LLIDGHKF-FTF-LIGEFNVSN 300

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L      I +G     +L+ +  +  + GRFE   + S G RI VDYAH  + ++ +LK
Sbjct: 301 LLACYATAILLGKKKEEILQKINTIPPIKGRFEQFISYS-GIRIIVDYAHNPDGIKNLLK 359

Query: 375 NIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            I+ I     R+I + GCGG+RD+ KR +MGKI  +  D++I T DNPR EDPEKI  + 
Sbjct: 360 AIQEIKKQEERLICIIGCGGNRDKEKRSLMGKIVYETCDLSIFTSDNPREEDPEKILID- 418

Query: 433 IHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +     ++ K         NR EAIRTAI+M  ++D++V+AGKGHE 
Sbjct: 419 MKNFRSYLNKDKEDILTIVNRKEAIRTAIQMAREKDIIVIAGKGHEN 465


>gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 500

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA A+V++ A   QD     A
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77

Query: 85  TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   R+   +++V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q 
Sbjct: 78  KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL 
Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E
Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313
            + +  NA        +  +   +K      + Q V I+ E    + +    L G F V 
Sbjct: 256 WLAKLPNAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELDSRLIGAFNVN 315

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370
           N L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE
Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A
Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435

Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I++G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483


>gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
 gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
          Length = 496

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 168/480 (35%), Positives = 248/480 (51%), Gaps = 55/480 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR    G +F  I G   D H FIP     GA A++   A      S  +  
Sbjct: 24  EITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAGARAVLTERA------SVDVPD 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +L V N ++ L       Y  +P     ++ +TGT+GK++ +  V+ I + +G    
Sbjct: 78  GVAVLYVPNLQEALDTIVPYFY-DYPARAMRVIGITGTNGKTTTSYLVRAILRHAG---H 133

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI +  +D  L    TTP  I L + L+ + ++G+  V +E SSH L   R+ G
Sbjct: 134 RVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDTVVMEVSSHALALGRVAG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVM 257
           I+    +FTNL +DH+D+H+T + Y  AK  LFE +      +   A++ ADDA S+ + 
Sbjct: 194 IEFDTAAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKEGKTAVLNADDAASETMR 253

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF------LFPL----P 307
              H   C V++ G      H   + A    Q V ++ +G +         LF L     
Sbjct: 254 AHTH---CPVITYGVD----HPADLTA----QDVQLACDGMELTLMHGGKRLFHLHTGIT 302

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAH 364
           G F V+N L A G  +A  +++A +   L     VPGRFE V    R G+   + VDYAH
Sbjct: 303 GLFNVHNVLAAVGASLAEHVEAADISAALTAFTGVPGRFELV----REGQDFAVIVDYAH 358

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T + +E +L+  R +T GRII VFGCGGDRD+ KRPIMG+I  ++ADIAI+T DNPR+ED
Sbjct: 359 TPDGMENVLRTARAVTKGRIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPRTED 418

Query: 425 PEKIRAEIIHGI-PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           P  I  E+  G+ P   +K      +R  AI  AI+     D +V+ GKGHET  I+ +G
Sbjct: 419 PAAIVNEVERGVLPVIGDKPYEKIVDRRTAIFHAIQRAQAGDTVVILGKGHETYQILKDG 478


>gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 481

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 234/461 (50%), Gaps = 27/461 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I+E+  DSR      +F+AI G   DGH ++  AI  GA  IVVS A         + 
Sbjct: 21  RDISEIIYDSRIKTRCGLFIAIKGYMSDGHKYVSNAIENGARVIVVSDA-------VFVA 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSS 144
           +N  ++ V +TR  ++  A   YG HP   LA   VTGT+GK+S    + +I +      
Sbjct: 74  ANIAVVRVKDTRAVMAAIAGNFYG-HPSKELALVGVTGTNGKTSTTFLLAEILEAYRKKI 132

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     I     +   TTP  I L K    ++++ V    +E SSH L  +R+DG  
Sbjct: 133 GVIGTIENRIGKQVMETARTTPESIDLQKLFRKMNTEDVDVAIMEVSSHALVLNRVDGCD 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL +DH+D+H+T   Y  AK +LF         +II  D  YSK ++    + 
Sbjct: 193 FDIGVFTNLTQDHLDFHETMDNYAAAKAKLFSMC----KISIINVDSPYSKVMLD---SC 245

Query: 264 GCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               ++ G +       K   IH ++ Q  +   GKD   + P+PGEF VYN + A    
Sbjct: 246 KAETITYGIKNPATFFAKDIVIHAHETQYVLEYNGKDLQIVVPIPGEFTVYNTMCAIICA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+    +   L+ +  VPGR +    +++G  + VDYAHT + LE +L  I+    G
Sbjct: 306 YKLGVPLDFIAXALKNVKGVPGRVQSF-QSTKGYSVLVDYAHTPDGLENVLTAIKQFAKG 364

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-----IHGIP 437
            I+ VFGCGGDRD  KRPIMG+IA   +    +T DNPRSE+P++I  +I      H  P
Sbjct: 365 DIVTVFGCGGDRDNKKRPIMGEIASKYSTKVYITSDNPRSEEPDEIIRQIEVGAKKHITP 424

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             IE  +R  AI  A+    K DV+++AGKGHET   + +G
Sbjct: 425 YEIE-SDRKTAIIKALSFAKKDDVILIAGKGHETYQHLKDG 464


>gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 485

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 248/471 (52%), Gaps = 34/471 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IF+A  G   DGH +I  A+  GA  I+VS           +
Sbjct: 18  DRKYDGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSK-------KVEM 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138
           + N   ++V++ R  L   AS  Y + P+    I+ VTGT+GK+S    ++++       
Sbjct: 71  KHNVSYVLVEDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPIT 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G   ++IG       F   N  TTP  + L K       + + +V +E SSH L+  R
Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGR 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +      FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +  
Sbjct: 184 VEVVDFDYALFTNLTQDHLDYHITMENYFQAKRKLFLKL-KDINNSVINIDDKYGKRLYD 242

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   ++S G  G  +    +    +   + I  + +     F L G+F +YN L A
Sbjct: 243 EFIIDNPEIISYGIDGGDLEGDYL----DDGYIDIKYKNQIEKVKFALLGDFNLYNTLGA 298

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R 
Sbjct: 299 IGIVLKIGISMEEILKRVSTIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARN 357

Query: 379 ITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
           I +G RII +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I  ++  G  
Sbjct: 358 IKNGNRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFDDVKKGFI 417

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               +  + +R +AI+ AI +  K D++++ GKGHET HI+  G KK   D
Sbjct: 418 KSDDYFFEPDREKAIKLAINIAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
 gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
          Length = 493

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 168/500 (33%), Positives = 250/500 (50%), Gaps = 57/500 (11%)

Query: 1   MKLQDLIY---KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKLQ+L+     +  ELIN+            I  +  DSR ++ G +FV I G   DGH
Sbjct: 3   MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKEGSLFVCIKGYTVDGH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115
            +  +A+  GA AIV     ++ D         P+++V ++++ L+  A   Y +  H  
Sbjct: 54  DYAEKAVKSGAAAIVAEHPLNITD--------VPVIIVKHSQRALARIADAFYEQPTHKL 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174
           N++ +TGT+GK+S    ++Q+ +++   +  IG     ++    D + TTP  + L K  
Sbjct: 106 NLIGITGTNGKTSTTHMIEQVMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  Q V    +E SSH L   R+ G       FTNL +DH+DYH T + Y +AK  LF
Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225

Query: 235 EELLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            +L       K   AI+ ADD  S    K        V++   + K   + K        
Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYFEKVT---AAEVMTYALEQKADVMAK-------- 274

Query: 290 QVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            + I  +G  FD + P         L G+F VYN L A  + I  G+    ++  +E+L 
Sbjct: 275 NIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELE 334

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GRFE V  + +   + VDYAHT +SLE +L   R +T G+I  V GCGGDRD+ KRP
Sbjct: 335 GVKGRFELVNCD-QDFPVIVDYAHTPDSLENVLTTCRELTEGKIFCVIGCGGDRDKTKRP 393

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEM 455
            M +IA+  AD  + T DNPRSEDP  I  ++ +G+P      F+   NR +AI  AI  
Sbjct: 394 QMAQIAVKYADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFV---NRKQAIFFAIAN 450

Query: 456 LNKQDVLVVAGKGHETVHIV 475
             K D +++AGKGHET  I+
Sbjct: 451 AKKGDTVLIAGKGHETYQII 470


>gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 488

 Score =  246 bits (627), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 156/485 (32%), Positives = 257/485 (52%), Gaps = 42/485 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           ELI  L    ++ R+   I  +  DSR ++ G++FV I G   DGH FIP+AI +G+  +
Sbjct: 7   ELIKDLKEKRVEGRQDLVIRGIECDSRKVEEGFLFVCIPGFNFDGHKFIPEAIKRGSRVV 66

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128
           VV               +  ++ V NTR  L++ A+R YG +P     ++ + GT+GK++
Sbjct: 67  VVEK-------DVKTAKDVTVIKVPNTRYALAVLANRFYG-YPSKKLQVVGIAGTNGKTT 118

Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               V+ + +++G      G     + +       TTP  + L   L+ L ++   +V +
Sbjct: 119 TTYLVRDVLKKAGKKVALFGTIEYDLGNRTLPASTTTPQSLELQAMLNELVNKEFEYVVM 178

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E S+H     R+ G +   G FTN+ RDH+D+H+T + Y  A+++ F  L      A+I 
Sbjct: 179 EVSTHATVLDRVTGCEFDIGVFTNISRDHMDFHKTMENYLEAEIKFFRLLSRTGRRAVIN 238

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-- 305
            DD Y++ ++K   N    +L+ G   K   ++          + +S  G  F+ + P  
Sbjct: 239 IDDPYAEHIIK---NTRTEILTYGINDKNADIRAF-------DIKVSKTGSRFNVITPLG 288

Query: 306 -------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  LPG + VYNAL A G+ I+ G++   + E +     VPGRFE +    +   +
Sbjct: 289 ETVFYLRLPGRYNVYNALAAVGVGISEGLNLNEIREAIAHAS-VPGRFERIDC-GQSFDV 346

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++L+  L+  R ++ GRIIVVFGCG D+D  +RP+MG +A  ++DIAI+T D
Sbjct: 347 IVDYAHTPDALQKALETARGLSEGRIIVVFGCGDDKD--RRPLMGVVAARMSDIAILTSD 404

Query: 419 NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           N R+E+P +I ++I  GI        ++   +R EAI  A+EM  + D++++AGKGHE  
Sbjct: 405 NSRNEEPSEIISDIESGIKKVDNSFQYLVIEDRFEAITQALEMAKEGDLVLIAGKGHEEY 464

Query: 473 HIVTN 477
            I+ +
Sbjct: 465 QIIKD 469


>gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 494

 Score =  246 bits (627), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 252/479 (52%), Gaps = 16/479 (3%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+ Q+ + P      ++ E+  DSR ++ G +FVA+ G++ DG  +IPQAIA+GA A++ 
Sbjct: 7   LLGQVELAP----NIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGASAVLA 62

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVAS 131
            +  + Q  S  I    PI+        LS  A   Y    H   ++ VTGT+GK++++ 
Sbjct: 63  ETEDAQQHLSTKIEQGVPIISFYQLGSHLSALAGLFYDNPSHKLTLVGVTGTNGKTTISQ 122

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            + Q     G  S  +G     +    ++   TT S + +  +L+    +G    ++E S
Sbjct: 123 LLAQWTTLLGHRSAVMGTIGNGLLGQVKEATNTTGSAVEVQASLADFVKRGADFAAIEVS 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL QHR++ +      FTNL RDH+DYHQ+ + Y  AK RLF EL  +    II ADD
Sbjct: 183 SHGLVQHRVEALAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTELNSRHQ--IINADD 240

Query: 251 AYSKEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +  +  ++   NA    C+     +Q +++    +       ++         +    L 
Sbjct: 241 SVGQTWLQEQPNAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGELHSALI 300

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+F V N L+     +++G D   +++ + +L  V GR E +  +++   I VDYAHT +
Sbjct: 301 GQFNVSNLLLVFATLLSLGYDIEKLMKTVPQLTGVCGRMERLSASNQPTAI-VDYAHTPD 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+  R    G++  VFGCGGDRD+GKRPIM KIA   AD  IVTDDNPR+E   +
Sbjct: 360 ALEKALQAARLHCQGKLWCVFGCGGDRDRGKRPIMAKIAEQFADHVIVTDDNPRTESAAQ 419

Query: 428 IRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  +I+ G   P  +E  + R +AI  A++  +  DV+++AGKGHE   I+   ++  S
Sbjct: 420 IVQDILAGFEHPQHVEVCHARDQAIIQALQKADSDDVVLIAGKGHEDYQIIGTQKQHFS 478


>gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 485

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 247/470 (52%), Gaps = 34/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           RK + +  DSR ++  +IFVA+ G   DGH +I  A+  GA  I+VS           ++
Sbjct: 19  RKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSR-------KVEMK 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----QR 139
                +++D  R  L   AS  Y + P+    I+ VTGT+GK+S    ++++       R
Sbjct: 72  HKVSYVLIDEIRHKLGYLASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G   ++IG       F   N  TTP  + L K       + + +V +E SSH L+  R+
Sbjct: 131 IGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRV 184

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +      FTNL +DH+DYH T + YF AK +LF +L    + ++   DD Y K++   
Sbjct: 185 DVLDFDYALFTNLTQDHLDYHVTMENYFQAKRKLFLKL-KDTNNSVFNIDDKYGKKLYDE 243

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  ++S G  G  +  + +    +   + I  + K     F L G+F +YN L A 
Sbjct: 244 FIEDNPEIISYGIDGGDLEGEYL----DDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAV 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + + +GI    +LE +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I
Sbjct: 300 AIAVKMGIKWEDILERISNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNI 358

Query: 380 TSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
            +G RII +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++  G   
Sbjct: 359 RNGNRIITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKTGFAK 418

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              +  + +R +AI+ AI M  K D++++ GKGHET HI+  G KK   D
Sbjct: 419 NDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parabacteroides distasonis
           ATCC 8503]
          Length = 486

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 171/513 (33%), Positives = 270/513 (52%), Gaps = 52/513 (10%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L+DLI   + P L+   ++         I  + SDSR +  G +FVA+ G   DGH +
Sbjct: 1   MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118
           +  AI +GA AIV       ++  + +      +VV ++ + L L  SR YG     ++ 
Sbjct: 53  MDSAIEKGAVAIVC------EETPSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSRKLML 106

Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
             VTGT+GK+++A+ + ++ ++ G    ++G  ST+ ++     +    TTP P+ L   
Sbjct: 107 VGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSL 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++ +   G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + 
Sbjct: 164 MARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKF 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIHN 287
           F++ LP  + A+  ADD  S  VM +   A     S+     ++GK +  H +    I N
Sbjct: 224 FDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLIIN 281

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            ++V +   G+           F  YN L   G  +++G D   VL  L  L  V GRFE
Sbjct: 282 GREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE 330

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKI 405
            +  +  G    VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K 
Sbjct: 331 TI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKE 389

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQD 460
           A+ L+D  I+T DNPR E+P+ I  +++ G+    +E+     +R +AI+TA  +  K D
Sbjct: 390 AVKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGD 449

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V++VAGKGHE    +  G K+   D + +REI 
Sbjct: 450 VILVAGKGHEDYQEI-KGVKQHFDDREKLREIF 481


>gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 504

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 255/472 (54%), Gaps = 29/472 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-SSAYSLQDFSATIR 87
           K  E+  DSR I+ G IF+AIVG+++DG  +I  AI++GA AI+  S++ + +D      
Sbjct: 22  KFKEIKLDSRKIEKGDIFLAIVGSQKDGRKYINHAISRGASAIIAESNSLTKEDEFIKFL 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  PI+ V N RK +  F+ +LYG       ++ VTGT+GK++V+  V Q+ +  G  S 
Sbjct: 82  NQIPIVFVKNIRKKIVFFSKKLYGSLNKKMKLIGVTGTNGKTTVSHIVAQLAKLIGQKSA 141

Query: 146 QIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            +G      I      + LTT S   +   L     + V  V++E SSHGLDQ R   + 
Sbjct: 142 VMGTIGNGLIGEKIYPSELTTLSCFEICSTLKMFLEKSVKIVAMEVSSHGLDQGRTCSLS 201

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             +  FTN+ RDH+DYH   + Y  +K +LF E   K    + + DD    + +K   N+
Sbjct: 202 FSSAIFTNITRDHLDYHNNIEHYELSKKKLFYEHDCKNR--VFFIDDPVGSKWIKDFPNS 259

Query: 264 GCRVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            C V S+ ++ K        ++  K+  ++N+  +  + +  + +      GEF V N +
Sbjct: 260 -CAV-SINHKNKLNLLNRPILYATKIEYLYNQTIIRFNSDWGNGEIRTSFLGEFNVANFM 317

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A    + IG    L++++ +++  V GR + V  +    R+ +DYAH S+SL+  L +I
Sbjct: 318 LAIASLLMIGYPIHLLIKNSKRVSPVIGRMQLV--SHYNPRVIIDYAHNSDSLKQCLISI 375

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R    G+I  VFGCGG RD+GKR IMG+IA   +D  I+TDDNPR EDP+KI  EI+ G 
Sbjct: 376 RKHFGGKIWCVFGCGGSRDKGKRAIMGRIAEKYSDFVIITDDNPRFEDPKKIFKEILRGC 435

Query: 436 -----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
                I  F E   R  AIR +I      D +++AGKGHE   IV  G++K+
Sbjct: 436 THLESIRYFPE---RKYAIRYSISRAKPNDTVLIAGKGHEEKQIV--GDRKI 482


>gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
 gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
          Length = 484

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 231/454 (50%), Gaps = 25/454 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K  +++ DSR +  G +F+A+ G   DGH FI  AI +GA AI+      +Q       +
Sbjct: 18  KAVDITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGAVAILCERRVPIQH-----DT 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+ VVD  R  L   A R YG   H   ++ +TGT+GK+S   +V Q     G     
Sbjct: 73  QVPVCVVDGLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGI 132

Query: 147 IGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG T+    + Q  D   TTP  I L + LS   SQG    ++E SSHGLDQ R+DG+  
Sbjct: 133 IG-TNGQGLWGQLSDTLNTTPDVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGRVDGLHF 191

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL RDH+DYH + +AYF AK RL     P    A++  DD + ++  +R     
Sbjct: 192 STAVFTNLSRDHLDYHHSMEAYFEAKWRLMR--WPGLRNAVVNLDDEWVQKNRERIMAER 249

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               ++        L+  C  H       +     D D    L G F + NAL A  + +
Sbjct: 250 VWTYALETDADVQALEVNC--HEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVML 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+        +   + V GR E +  ++    + VDYAHT ++LE  L++ R   +GR
Sbjct: 308 AEGVPVNTAARVISNCNPVKGRMETL-RSAYSPTVVVDYAHTPDALEKALQSCREHVNGR 366

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           ++V+FGCGGDRD GKRP M ++A   AD+ +VTDDNPR+E   +I A+I     GF  + 
Sbjct: 367 LVVIFGCGGDRDGGKRPEMARVAEQYADVVVVTDDNPRTEPSARIIADIEQ---GFSTEA 423

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHET 471
           N      R EAI   +    + DV+++AGKGHE+
Sbjct: 424 NYRVIPDRREAIVQTLNDSERSDVVLIAGKGHES 457


>gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
 gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
          Length = 530

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 172/531 (32%), Positives = 266/531 (50%), Gaps = 75/531 (14%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   IF AI G   DG+ FI + + Q A A+V++      D   
Sbjct: 9   FQKHNVKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQ-AVALVIT------DNKK 61

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               +  ++ V++ +  L       Y K P+N++AVTGT+GKSSV S++ Q     G  +
Sbjct: 62  NTIIDDKVIYVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKA 121

Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             IG T  +  F  DN       LTT   +   K    L+   + +++ EASSHGL+Q R
Sbjct: 122 ASIG-TIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQAR 180

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----------------------- 235
           L  IK+    FT+  +DH+DYH T++ Y  AK++LF                        
Sbjct: 181 LGEIKVNTACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLFKPAYREEFKGDTEHSTTAY 240

Query: 236 --------------------------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
                                     E L +   AI+ +D A  + V     N   + ++
Sbjct: 241 ILVREDASTGSTSKLLLEAKFGKMSTEYLLQGGLAILNSDIAEIEFVKDYLRNHNIKFIT 300

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           VG +G  + + K+      Q +      ++  F   + G FQ  N L+AA     IG D 
Sbjct: 301 VGKKGD-VQITKINGSLKAQNINFIFNNRECSFNTSIIGSFQASNLLIAALSIHYIGFDF 359

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVV 387
             ++E L ++  V GR E +G  +    I+VDY+HT ++LE  L  ++ +     R+ VV
Sbjct: 360 NKIIEILTQVKPVKGRMERIGNTN----IFVDYSHTPDALEKALTELKNVKLRDSRLNVV 415

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNR 445
           FGCGG+RD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEII GI    + E  NR
Sbjct: 416 FGCGGNRDKTKRSLMGQIAARLADNVIITDDNPRHEDPKLIRAEIISGIEKADYTEIANR 475

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILGL 495
            EAI+  I  L + D+L++AGKGHE   I+  G+KK+   D +I+R+++ L
Sbjct: 476 EEAIKYGINNLKQDDILLIAGKGHENYQII--GDKKLPFDDAEIVRKLMSL 524


>gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 483

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 263/476 (55%), Gaps = 32/476 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V  DSR  +  ++F+AI G K DG  ++ +AI  GA A+V      ++++       
Sbjct: 22  ISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAVAVVTDR--EIKEYPGI---- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           T +LV D  R  ++  AS  Y        ++ VTGT+GK+SV   ++ I +R    + ++
Sbjct: 76  TTVLVED-ARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D  +    TTP  + L +  S + ++GV +V +E SSH L  +R+D  +
Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVDECE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+HQ  + Y   K +LF+     +S ++I  DD YS  +++ +   
Sbjct: 192 FDIAVFTNLSQDHLDFHQNMEEYAKTKSKLFK---MAKSASVINIDDKYSSMMIESSK-- 246

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +VL+ G +   ++  K +    +  +  + +E K  +    +PG F VYNAL A  + 
Sbjct: 247 -AKVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGIFSVYNALAAITVA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI    V E L ++  V GRFE V T  +   + +DYAHT + ++ I++ ++   +G
Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFELVET-GKDFYVIIDYAHTPDGIQNIMEALKEYKTG 363

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R I++FG GGDRD+ KRP+MG++A   AD  I+T DNPRSEDP +I ++I  GI      
Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKTNCP 423

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
           ++   NR EAI  A+    K DV+++AGKGHET  I+  G+K +  D  +I++EIL
Sbjct: 424 YVVIENRKEAISYALTNAQKDDVIILAGKGHETYQII--GDKVIHFDEREIVKEIL 477


>gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 500

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 246/469 (52%), Gaps = 25/469 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA A+V++ A   QD     A
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77

Query: 85  TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   R+   +++V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q 
Sbjct: 78  KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I + + L+     GV   ++E SSHGL 
Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E
Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313
            + +  +A        +  +   +K      + Q V I+ E    + +    L G F V 
Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370
           N L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE
Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A
Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435

Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I++G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483


>gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
 gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
          Length = 508

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 231/455 (50%), Gaps = 20/455 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR +  G +FVA+ G   DGH FI  AI  GA A+      + ++  A    +
Sbjct: 36  ITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEAGAVAV------ACEELPAAYSDS 89

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              LVV + RK L+  +   YG   + ++   VTGT+GK++ A  V  +   SG+++  I
Sbjct: 90  VTWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTTTARLVTSMLNASGVAAGYI 149

Query: 148 GP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I +       TTP P  L      +   G     +E SSH L   R+ G+   A
Sbjct: 150 GTGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVMEVSSHSLVLDRVHGLFFRA 209

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL  +H+D+H+T + Y  AK  LF++L   E  A+I ADD  ++ +  R       
Sbjct: 210 AVFTNLTPEHLDFHETMEEYAEAKRLLFDQL-NAEGFAVINADDPRAEFMAARLAPERVF 268

Query: 267 VLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             S G         +  H     +     +  ++ +G+      PLPG + V N L A  
Sbjct: 269 CCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSMAMQVPLPGAYNVMNMLEAFT 328

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + + +GID A  L  L     + GR E + +  R     VDYAHT ++L+  L+ +R +T
Sbjct: 329 VGVGLGIDPATALRSLAAADAIAGRMERIWSRDRSRCAVVDYAHTPDALQKALEALRAVT 388

Query: 381 --SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
               ++ VVFGCGG+RD+ KRP MG+IA +LAD  I+T DNPR E+PE I  E+  G+ G
Sbjct: 389 PADAKLAVVFGCGGNRDRQKRPEMGRIAAELADRVILTSDNPRDENPEAILDEVEAGMAG 448

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
              +   +R EAIR A+E L   D+L+VAGKGHE 
Sbjct: 449 RVHLRIADRAEAIRRAVEQLGAGDILLVAGKGHEA 483


>gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans
           C54]
          Length = 954

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 245/473 (51%), Gaps = 37/473 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G +FVA  G   DG L+I +A+A GA A++  +  +    +A    +TP+L V
Sbjct: 34  DSREIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPATAAIEAAAAAGDTPMLPV 93

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
              R  L       YG+ P + LAV   +G +   S VQ I    G +    G   T+ +
Sbjct: 94  TGLRALLGELGDTWYGR-PSSTLAVVAVTGTNGKTSSVQWIAHALGRNDKPCGTIGTLGA 152

Query: 156 FAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              D +     LTTP  + + + L+ +   G   V++EASS G++Q R+DG+++   ++T
Sbjct: 153 VLPDGQTLGGHLTTPDVLTVHRLLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALAAYT 212

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL RDH+DYH T + Y  AK  LF    P  S A++ ADD   + ++  +  A   V+  
Sbjct: 213 NLTRDHLDYHGTMERYEAAKASLFR--WPGLSAAVVNADDEAGRRLIA-SLPADLSVM-- 267

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGL 321
           GY         + A    + +  + +G+ F  + P         L G   V N L+ AG+
Sbjct: 268 GY--SLSADPAIPAAMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGV 325

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV-----GTNSRGGR---IYVDYAHTSNSLEMIL 373
              +G+  A +   L     V GR + V      T +  GR   + VDY+HT +SL   L
Sbjct: 326 LYKLGLPFAQIARELAATDPVDGRLQTVEPVAASTQAHAGRGALVVVDYSHTPDSLARAL 385

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +R +    +GR++ VFGCGGDRD GKRP MG+IA +LAD  +V+ DNPRSE P+ I A
Sbjct: 386 MALRPVAQARAGRLVCVFGCGGDRDAGKRPEMGRIAAELADHVVVSSDNPRSESPDAIVA 445

Query: 431 EIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +I+ GIP  +    + +R  AI  AI     +DV+++AGKGHET   +  GEK
Sbjct: 446 QILAGIPASVAVEVQVDRARAIMQAIWASAPEDVVLLAGKGHETYQEIA-GEK 497



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 166/393 (42%), Gaps = 30/393 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+D+R I AG +FVA+VG   D H ++ QA  +GA A VV+ A           S+
Sbjct: 515 VKGVSTDTRRIGAGELFVALVGENFDAHNYLDQAAERGACAAVVAHAVP--------ESS 566

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LV+ +TR  L    +    +    ++AVTG++GK++    +  +     L+ ++   
Sbjct: 567 LPQLVLGDTRVALMRIGAAWRARFKLPVVAVTGSNGKTTTKEMISAM-----LAGWRGEA 621

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++   +N +  P  +        L  +    V     +H  +  +L  I   + + 
Sbjct: 622 GRLATAGNLNNDIGVPLTVL------RLRPEHRAAVFELGMNHPGEIAQLAAIAAPSVAL 675

Query: 210 -TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN  R+H ++  T +A            LP +  A+   D+ Y+    + A  A  R L
Sbjct: 676 VTNAQREHQEFMHTVEAVALENGAAIAA-LPADGVAVYPGDEPYAAIWDRLA--APRRAL 732

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G Q G  ++ +++ A  +  +  +       D   P+PG   + NAL A    IA G 
Sbjct: 733 RFGLQPGLDVYAEQILADVDSTRCRVVTPVGSADLTLPVPGVHNLRNALAAIASAIAAGA 792

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385
              + +  L     V GR ++   +   G + +D  + +N  S+   +  +  I   R++
Sbjct: 793 PLDVAVRALAGFSPVAGRMQYKKLSD--GTLLIDDTYNANPDSVRAAIDVLARIAGTRVL 850

Query: 386 VVFGCG--GDRDQGKRPIMGKIALDLADIAIVT 416
           V+   G  GD        +G  A +L   A++T
Sbjct: 851 VLGDMGEVGDNGPAMHEEVGNYARELGLDALIT 883


>gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
 gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
          Length = 486

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 269/514 (52%), Gaps = 54/514 (10%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L+DLI   + P L+   ++         I  + SDSR +  G +FVA+ G   DGH +
Sbjct: 1   MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
           +  AI +GA AIV   A S       +      +VV ++ + L L  SR YG  P     
Sbjct: 53  MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+++A+ + ++ ++ G    ++G  ST+ ++     +    TTP P+ L  
Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++ +   G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK +
Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286
            F++ LP  + A+  ADD  S  VM +   A     S+     ++GK +  H +    I 
Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N ++V +   G+           F  YN L   G  +++G D   VL  L  L  V GRF
Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404
           E +  +  G    VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K
Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKG----NRIEAIRTAIEMLNKQ 459
            A+ L+D  I+T DNPR E+P+ I  +++ G+    +E+     +R +AI+TA  +  K 
Sbjct: 389 EAVKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKG 448

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           DV++VAGKGHE    +  G K    D + +REI 
Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481


>gi|303327353|ref|ZP_07357794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862293|gb|EFL85226.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 488

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 259/479 (54%), Gaps = 28/479 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD--FSATIRSN 89
           EV SDSR +  G IFVA+ G  EDG  FIP A+  GA  +V       +D    A++R+ 
Sbjct: 18  EVRSDSRVVGQGDIFVAVPGVNEDGARFIPAAVEAGAAVVVCRPG-GPEDAALQASVRAE 76

Query: 90  TPILVV-DNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +V  ++ R+ L   A   +  G     IL VTGT+GK++    ++++   +G    +
Sbjct: 77  GCRVVYHEDPREALWRLAEARWRTGASRVKILGVTGTNGKTTSTYLLERLFTDAG---HK 133

Query: 147 IGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   T+S      ++   LTTP P+ +   L+ + + GV    +E SSH +DQ R+ G+
Sbjct: 134 VGVLGTVSYRWPGHSEAAPLTTPDPLRVHSMLAQMEAAGVDVAVMEVSSHAIDQQRVCGV 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                +FTNL +DH+D+H+  ++YF  K RLF EL   E    + ADD + + +++    
Sbjct: 194 PFAGAAFTNLTQDHLDFHKDMESYFKTKARLFLELPRAEKVMAVNADDPWGRRLLELCP- 252

Query: 263 AGCRVLSVGYQ---GKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              R LS G Q    +  HL  + + A     ++ + +EG+ ++   PL G F   N L 
Sbjct: 253 ---RALSFGLQQGPPRRRHLWGELLSAGTEGCRLRMHLEGRTWELRSPLVGAFNASNLLT 309

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              L +  G+D     + LE    V GR E V  NS+G  ++VDYAHT ++L  +LK +R
Sbjct: 310 VQALALETGLDPGQ-FKALESFTGVCGRLERV-ENSQGLNVFVDYAHTPDALVNVLKALR 367

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                RII VFGCGG+RD+ KRP+MG+     AD+A++T DNPR E+PE I  +++ G+ 
Sbjct: 368 GAGFKRIITVFGCGGNRDRTKRPLMGEAVARYADVAVLTSDNPRFEEPEAILRDVLPGLK 427

Query: 438 GFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              E   + +R  A   A++ML K D L++AGKGHE   I+  G K    D +++RE+L
Sbjct: 428 EAREVLVEVDRHAATARALDMLGKDDALLIAGKGHEDYQII-QGVKHHYSDQEVVRELL 485


>gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 501

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 241/469 (51%), Gaps = 25/469 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA A+V++ A   QD     A
Sbjct: 19  KPLKQMTLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGA-ALVLAEADEGQDEIELDA 77

Query: 85  TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   R+   ++ V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q 
Sbjct: 78  KFAKYNLDRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQW 137

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL 
Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E
Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELNTKAQ--VLNADDEVGRE 255

Query: 256 VMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + +  NA        +    KF+ +  V       ++T      +      L G F V 
Sbjct: 256 WLAKLPNAVAVSTDASFSSDHKFVKVTDVSFSLQGVKITFESSWGNGALNSRLIGAFNVN 315

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370
           N L A    + +G D   ++E    L  V GR E+V +         + VDYAHT ++LE
Sbjct: 316 NLLTALASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDALE 375

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R  T G +  +FGCGGDRD GKRP+M  IA  LAD  I TDDNPR+ED  KI A
Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEKLADKVIATDDNPRTEDNAKIMA 435

Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I+ G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 436 DILKGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483


>gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
 gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
          Length = 500

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 238/462 (51%), Gaps = 28/462 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V + S   +   +F  I G K DGH F   A+ +GA  ++   A  LQ          P
Sbjct: 32  DVFNKSHQCEENSLFCCIPGEKHDGHSFASDAVQRGAAVLLCQHALPLQ---------VP 82

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            ++V+N+R  +   A+ +YG   + +    +TGT+GK++ +  ++ I + +G     +G 
Sbjct: 83  QIIVENSRWAMGFAAAAVYGFPSKQVSLYGITGTNGKTTSSYMIRSILEEAGEKCGLMGT 142

Query: 150 -TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                    Q+   TTP    + + ++ +   G T V +EASSHG +Q RL+G       
Sbjct: 143 IVYADGEKEQEADRTTPESCDVQRLIARMKRNGCTSVIMEASSHGANQGRLNGCLFQGMV 202

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL  +H+DYH+  + YF AK +LFEE + +     + +DD Y + +++     G + L
Sbjct: 203 FTNLTPEHLDYHKDMEHYFEAKKKLFEEYVSENWCGAVNSDDEYGRRLLRIY---GKKCL 259

Query: 269 SVGYQGKFIH---LKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324
           S G      H   L+      ++  + +     D  D   PL G F +YNAL A  +C  
Sbjct: 260 SFGLDSTRHHDVQLQNFYMTLSELSMKVQFFNSDPIDITLPLTGRFNIYNALGAMAICYK 319

Query: 325 IGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +G+   ++ + LE +  VPGR E +   N   G   VDYAHT ++LE +L  +R +  G+
Sbjct: 320 MGVAPLVIKKGLESMPQVPGRLEKYFFENEVCG--VVDYAHTPDALENVLSALREVCHGK 377

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           II VFG GG+R Q  RP++G++A  LADI IVT DN RSEDP KI   I  GI   +E  
Sbjct: 378 IISVFGHGGERYQANRPLLGQVAARLADIIIVTMDNSRSEDPAKIAEAIEQGIASVVEAP 437

Query: 444 ------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
                 +R EA+RTA+ M    DV+VV GKG E   ++ N +
Sbjct: 438 PHYRILDRNEAVRTALSMAKPGDVVVVTGKGPERFIVMDNNK 479


>gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
 gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
          Length = 487

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 175/510 (34%), Positives = 268/510 (52%), Gaps = 46/510 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKLQ+L+Y           I P+Q     E+++  V+ DSR I+ G +F+A+ G + DGH
Sbjct: 1   MKLQELLY----------DIKPIQIIGDVEKEVTGVNIDSRKIEKGHLFIAMKGTQTDGH 50

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115
            +I +AI  GA AI+      L+D           + V++T   +   A+  YG   H  
Sbjct: 51  AYIAKAIELGATAIL------LEDMPQQYTEGITYIQVESTEDSVGKVATAFYGNPSHHL 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLA 171
            ++ VTGT+GK+++A+ +  + +R G    + G  ST+ ++ +D  +    TTP PI L 
Sbjct: 105 ILVGVTGTNGKTTIATLLYNMFRRMG---HKCGLLSTVCNYIEDKAVPADHTTPDPIELN 161

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS +   G  +  +E SSH + Q R+ G+K     FTNL RDH+DYH+T + Y NAK 
Sbjct: 162 ALLSEMVKAGCEYAFMECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKK 221

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F+  L K++ AI  ADD  +  +M +   A  +  S+     F    K+   H    +
Sbjct: 222 AFFDG-LSKDAFAITNADDK-NGMIMVQNTKATVKTYSIRTLADF--SAKILECH-FDGM 276

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVG 350
            + V GK+ +  F   G+F V N L   G  + +G D   VL  L  LH V GR + F  
Sbjct: 277 ELEVNGKEVNVQF--IGKFNVSNLLAVYGAAVMLGKDPEDVLVALSALHSVNGRLQPFHS 334

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALD 408
            N  G    VDYAHT ++LE +L  I  + +G+  +I V G GG+RD+GKRP+M + A+ 
Sbjct: 335 PN--GYTAIVDYAHTPDALENVLNAIHEVLNGKGHVITVCGAGGNRDKGKRPLMAQEAVK 392

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D  I+T DNPR E+P+ I  +++ G+        I   +R E IRTA  +  K DV++
Sbjct: 393 QSDKVIITSDNPRFEEPQDIINDMLAGLDNKQMKKVISIVDRKEGIRTACMLAQKGDVIL 452

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHE    +  G K    D ++++EI 
Sbjct: 453 IAGKGHENYQDI-KGVKHHFDDKEVLQEIF 481


>gi|262273818|ref|ZP_06051631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
 gi|262222233|gb|EEY73545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
          Length = 495

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 171/475 (36%), Positives = 250/475 (52%), Gaps = 16/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ D+R I  G +FVA+ G+  D   FIP AI  GA A++         F  T++  
Sbjct: 22  ITGLTLDNRQITPGDVFVAVQGHSLDARRFIPAAIEAGAAAVIADDGDIHGQFDVTMQGG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++   + +  LS  A R Y    +   ++ VTGT+GK++V+  V Q     G  +  +
Sbjct: 82  VPVVAFPHLKSTLSDIAGRFYQSPSQGMTVIGVTGTNGKTTVSQLVAQWIDLLGGKAAVM 141

Query: 148 GPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G T      A    L TT S + + + L+  + QG THV++E SSHGL Q R+  +   A
Sbjct: 142 GTTGNGFLDALAPALNTTGSALDIQQQLAAFNQQGATHVAMEVSSHGLVQDRVKAVAFDA 201

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGC 265
             FTNL RDH+DYH T +AY  AK+RLF       SP ++I ADD      +     A  
Sbjct: 202 AIFTNLSRDHLDYHGTMEAYAEAKLRLFTHY---GSPVSVINADDPVGMRWLGSMPEAVA 258

Query: 266 RVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             +S      +QG+ + L  V    +   +T      + +F  PL GEF V N LV+   
Sbjct: 259 VSMSEKAVHQHQGRKLWLTAVDYATSGVSITFDSSWGEGEFTTPLVGEFNVMNLLVSLAT 318

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A+G + A +L    +L  V GR E      +     VDYAHT ++LE  L  +R    
Sbjct: 319 LLALGYEKAALLASATQLQAVVGRMEVFHRPDKP-MCVVDYAHTPDALEKALHALRRHCD 377

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           G++  +FGCGGDRD GKRP+M  IA  LADI I+TDDNPRSE P+ I A+++ G+     
Sbjct: 378 GKLWCIFGCGGDRDIGKRPMMADIAEKLADIVILTDDNPRSESPQAIVADMLRGMTDPDK 437

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            I   +R +A   A+E  ++QDV+++AGKGHE   ++ +G    S D D +R +L
Sbjct: 438 AIILHDRAQACSYALENASEQDVILIAGKGHEDYQVLASGTVHYS-DRDTVRRLL 491


>gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 528

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 170/531 (32%), Positives = 268/531 (50%), Gaps = 80/531 (15%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   +F AI G   DG+ FI  A+ Q A  ++  +  ++     
Sbjct: 9   FQQHNVKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALVITDNKKNI----- 63

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V++ +  L       Y K P+N+ AVTGT+GKSSV S++ Q     G  +
Sbjct: 64  ---VIDKVIYVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQTYSLLGKKT 120

Query: 145 FQIGPTSTISS--FAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             IG   TI    F  DN       LTT   +   K    L+  G+ +++ EASSHGLDQ
Sbjct: 121 ASIG---TIGGEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEASSHGLDQ 177

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----------EEL--------- 237
            RL  IK+    FT+  +DH+DYH T++ Y  AK++LF          EE          
Sbjct: 178 ARLGEIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGDTERRTA 237

Query: 238 ----------------LPKESP--------------AIIYADDAYSKEVMKRAHNAGCRV 267
                           LP E+               AI+ +D    + V    HN   + 
Sbjct: 238 AYTSDRADSSTGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLHNHNIKF 297

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++VG +G  + + ++ +    Q +  +   ++++F  P+ G FQ  N L+AA      G 
Sbjct: 298 ITVGKKGD-LEITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAALSVHYTGF 356

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRII 385
           D   ++E L ++  V GR E +   +    I+VDY+HT ++LE  L  ++ I     ++ 
Sbjct: 357 DFNKIIEILTQVKPVKGRMERIDNTN----IFVDYSHTPDALEKALTELKNIKLRDSKLS 412

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443
           VVFGCGG+RD+ KR IMG+IA  LAD  I+TDDNPR+E+P+ IR EII GI    + E  
Sbjct: 413 VVFGCGGNRDKTKRSIMGQIAAKLADTIIITDDNPRNENPKLIRTEIISGIDKADYTEIA 472

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREIL 493
           NR EAI+  I  L + D+L++AGKGHE   I+  G+KK+   D +++R+ +
Sbjct: 473 NREEAIKYGINNLKQDDILLIAGKGHENYQII--GDKKLPFDDAEVVRKCI 521


>gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 500

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA A+V++ A   QD     A
Sbjct: 19  KPLKQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77

Query: 85  TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   R+   +++V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q 
Sbjct: 78  KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    QD   TT S I + + L+     G    ++E SSHGL 
Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E
Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313
            + +  +A        +  +   +K      + Q V I+ E    + +    L G F V 
Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370
           N L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE
Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A
Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435

Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I++G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483


>gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 500

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 246/469 (52%), Gaps = 25/469 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA A+V++ A   QD     A
Sbjct: 19  KPLKQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77

Query: 85  TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   R+   +++V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q 
Sbjct: 78  KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I + + L+     GV   ++E SSHGL 
Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E
Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313
            + +  +A        +  +   +K      + Q V I+ E    + +    L G F V 
Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370
           N L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE
Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A
Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435

Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I++G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483


>gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_7]
          Length = 486

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 269/514 (52%), Gaps = 54/514 (10%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L+DLI   + P L+   ++         I  + SDSR +  G +FVA+ G   DGH +
Sbjct: 1   MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
           +  AI +GA AIV   A S       +      +VV ++ + L L  SR YG  P     
Sbjct: 53  MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+++A+ + ++ ++ G    ++G  ST+ ++     +    TTP P+ L  
Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++ +   G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK +
Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286
            F++ LP  + A+  ADD  S  VM +   A     S+     ++GK +  H +    I 
Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N ++V +   G+           F  YN L   G  +++G D   VL  L  L  V GRF
Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404
           E +  +  G    VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K
Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQ 459
            A+ L+D  I+T DNPR E+P+ I  +++ G+    +E+     +R +AI+TA  +  K 
Sbjct: 389 EAVKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKG 448

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           DV++VAGKGHE    +  G K    D + +REI 
Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481


>gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 487

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 166/499 (33%), Positives = 255/499 (51%), Gaps = 49/499 (9%)

Query: 10  DFPELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           D  EL+  L  F +Q  E+ I+   +  DSR ++ G +F+ I G   DGH F   A+ +G
Sbjct: 2   DLRELLTHLHDF-VQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A AI+      ++     ++S         T++ +++ A   Y +  +  +++ VTGT+G
Sbjct: 61  AVAILAEKPVDVEVPVVRVKS---------TKRAMAVLADAFYNQPTQKMHLIGVTGTNG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   ++ I +     +  IG     I   + D + TTP  + L K    +  + V  
Sbjct: 112 KTTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEV 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------- 237
             +E SSH LD  R+ G       F+NL +DH+DYH T + Y  AK  LF +L       
Sbjct: 172 AMMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHN 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK   A++ ADDA ++E +K   N    V++ G       + +   I     + I+  G
Sbjct: 232 RPK--FAVLNADDAATEEYIK---NTAATVITYG-------IDRDSDI-RATNIQITNSG 278

Query: 298 KDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             FD   P         L G+F VYN L A   C+  GI  ++++E ++ L  V GRFE 
Sbjct: 279 TTFDLTTPTETVRVEMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEV 338

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +   + VDYAHT +SLE +LK ++      I V+ GCGGDRD+ KRPIM +IA +
Sbjct: 339 VDA-EQDFTVIVDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAE 397

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  AI+T DNPRSEDP  I  ++  G+    ++   +R EAIR A+E  +  DV+V+AG
Sbjct: 398 YSTQAILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVEAAHADDVVVIAG 457

Query: 467 KGHETVHIVTNGEKKMSVD 485
           KGHET  I+  G+K    D
Sbjct: 458 KGHETYQII--GKKVFDFD 474


>gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 485

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 261/501 (52%), Gaps = 46/501 (9%)

Query: 19  SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           SI P++    ++ +I  V  DSR + +G +F+A+ G + DGH +IP AI +GA AI+   
Sbjct: 9   SIHPVKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIEKGAIAILC-- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
               ++  A +      + V ++   +   A+  YG       ++ VTGT+GK+++A+ +
Sbjct: 67  ----EELPAELNEEITYIQVTDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTTIATLL 122

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189
               +  G   +++G  ST+ ++  D  +    TTP PI L + L  ++ +G  +  +E 
Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYAFMEV 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+E LPK S ++   D
Sbjct: 180 SSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKSSFSLTNLD 238

Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303
           D      ++    + +    R LS  ++GK +  H + +    N  ++ +          
Sbjct: 239 DKNGLVMTQNTKSKVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVQ--------- 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G F   N L   G  + +G     VL  L  LH V GRF+ +  + +G    VDYA
Sbjct: 289 --FIGRFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYA 345

Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR
Sbjct: 346 HTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPR 405

Query: 422 SEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            E+P+ I  +++ G+    +K      +R EAIRTA  +  K DV++VAGKGHE    + 
Sbjct: 406 FEEPQDIINDMLAGLDNEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI- 464

Query: 477 NGEKKMSVDCDIIREILGLIL 497
            G K    D ++++EI  L +
Sbjct: 465 KGVKHHFDDKEVLKEIFSLTI 485


>gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 482

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/497 (32%), Positives = 260/497 (52%), Gaps = 46/497 (9%)

Query: 19  SIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           +I P+Q     E+ I  V+ DSR + AG +F+A+ G + DGH +IP AI +GA A++   
Sbjct: 9   TIQPVQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPAAIEKGAIAVLC-- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
               +D       N   + V ++   +   A+  YG       ++ VTGT+GK+++A+ +
Sbjct: 67  ----EDMPEEPTPNITYIQVKDSENAVGKVATAFYGDPTSKMELVGVTGTNGKTTIATLL 122

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189
               +  G   +++G  ST+ ++  D  +    TTP PI L + L  ++  G  +  +E 
Sbjct: 123 YNTFRHFG---YKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEMADSGCKYAFMEV 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ +PK + ++   D
Sbjct: 180 SSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNAFSLTNLD 238

Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303
           D      ++    R +    R LS  ++GK +  H + +    N +++ +   GK     
Sbjct: 239 DKNGLVMTQNTRSRVYTYSLRSLS-DFKGKILESHFEGMLLDFNNRELAVRFIGK----- 292

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                 F  YN L   G  + +G     VL  L  LH V GRF+ +  + +G    VDYA
Sbjct: 293 ------FNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFDSI-RSPKGITAIVDYA 345

Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+T DNPR
Sbjct: 346 HTPDALVNVLNAIHDVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPR 405

Query: 422 SEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            E+P+ I  +++ G+        I   +R EAI+TA  +    DV+++AGKGHE    + 
Sbjct: 406 FEEPQDIINDMLAGLDKDDMQKTISITDRKEAIKTAYMLAQPGDVILIAGKGHENYQEI- 464

Query: 477 NGEKKMSVDCDIIREIL 493
            G K    D +II+EI+
Sbjct: 465 KGVKHHFDDKEIIKEIM 481


>gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
          Length = 490

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 262/504 (51%), Gaps = 49/504 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+       ++ L+  P       I  +  DSR ++ G +F+ I G   DGH F 
Sbjct: 1   MKLQTLL-----SYLHDLT--PYVGENPTITSIEMDSRQVKKGALFICIKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            QA+  GA AI+      +         + P++VV ++R+ +++ A   YG+  H  +++
Sbjct: 54  KQAVENGAVAIIAERPLDV---------DVPVIVVRDSRRAMAVLADAFYGQPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++QI +++   +  IG     I   A   + TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTHIIEQIVRKANKKTGLIGTVHIKIGDDAYPTQNTTPESLLLQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +GV    +E SSH L   R+ G       FTNL +DH+DYH T + Y NAK  LF +L
Sbjct: 165 ADEGVDVAIMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 238 ---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                 E P  A++  DD  S+      H     V++ G +     + K        ++ 
Sbjct: 225 GNRYDHERPKFAVLNNDDPASQYY---KHMTAATVITYGTKTDSDIMAK--------RID 273

Query: 293 ISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           I   G  FD + P         L G F VYN L A   C+  GI   +++E +E++  V 
Sbjct: 274 IVPNGMAFDLITPHGTARVKTKLIGLFNVYNLLAAVSACLVSGIPFPVIVEAIEEISGVA 333

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GRFE V    +   + VDYAHT +SLE +LK  +      + VV GCGGDRD+ KRP+M 
Sbjct: 334 GRFETVD-EGQDFTVIVDYAHTPDSLENVLKTAQQFARKNVYVVVGCGGDRDRTKRPLMA 392

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDV 461
           K+A+  AD+AI T DNPRSEDPE+I  ++  G+PG  ++   +R EAI  AIE   + D+
Sbjct: 393 KVAVQYADVAIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEGDI 452

Query: 462 LVVAGKGHETVHIVTNGEKKMSVD 485
           +++AGKGHET  I+  G++ ++ D
Sbjct: 453 VLIAGKGHETYQII--GDRVIAFD 474


>gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
 gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
          Length = 485

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 256/475 (53%), Gaps = 32/475 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR I+AG +FVA+ G + DGH FI +AI  GA+A++V      +D    ++ +   
Sbjct: 26  INIDSRKIKAGHLFVAVKGTQVDGHQFINKAIELGAKAVLV------EDMPTDLKEDVTY 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + V +T   +   A+  YG   + +  + VTGT+GK+++A+ +  + ++ G   +++G  
Sbjct: 80  VQVASTETEVGKIATIFYGNPTKKLKLVGVTGTNGKTTIATLLYNMFRKFG---YKVGLI 136

Query: 151 STISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           ST+ ++  D       TTP PI L + L  + + G  +  +E SSH + QHR+ G+    
Sbjct: 137 STVCNYIDDEARPTDHTTPDPIELNQLLGEMVAAGCEYAFMECSSHAIHQHRIGGLHFEG 196

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL RDH+DYH+T + Y NAK ++F + L K + AI  ADD   K  M    N    
Sbjct: 197 GVFTNLTRDHLDYHKTFENYRNAK-KMFFDSLSKNAFAITNADD---KNGMIMVQNCKAN 252

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           + +   Q       K+   H  + + + V+GK+    F   G+F V N L   G  I +G
Sbjct: 253 IKTYSMQRMADFRAKIIECH-FEGMYLEVDGKEVGVQF--IGKFNVSNLLAVYGTAIMLG 309

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGR 383
                +L  L  L  V GR + V +   G    VDYAHT ++LE +L  I  +    +G+
Sbjct: 310 KSQDDILLALSTLKSVNGRLDPVHS-PEGFTAIVDYAHTPDALENVLGAIHDVLEGKNGK 368

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +I V G GG+RD+GKRP+M + A+  +D  I+T DNPR EDP+ I  +++ G+     K 
Sbjct: 369 VITVCGAGGNRDKGKRPLMAQEAVKQSDTVILTSDNPRFEDPQAIIDDMVAGLDANQRKK 428

Query: 444 -----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                +R EA+RTA  M  K DV++VAGKGHE    +  G K    D +++REI 
Sbjct: 429 VLTIVDRREAMRTAAMMAKKGDVILVAGKGHEDYQDI-QGVKHHFDDHEVLREIF 482


>gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
 gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
          Length = 486

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 268/514 (52%), Gaps = 54/514 (10%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L+DLI   + P L+   ++         I  + SDSR +  G +FVA+ G   DGH +
Sbjct: 1   MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
           +  AI +GA AIV   A S       +      +VV ++ + L L  SR YG  P     
Sbjct: 53  MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+++A+ + ++ ++ G    ++G  ST+ ++     +    TTP P+ L  
Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++ +   G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK +
Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286
            F++ LP  + A+  ADD  S  VM +   A     S+     ++GK +  H +    I 
Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N ++V +   G+           F  YN L   G  +++G D   VL  L  L  V GRF
Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404
           E +  +  G    VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K
Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKG----NRIEAIRTAIEMLNKQ 459
            A  L+D  I+T DNPR E+P+ I  +++ G+    +E+     +R +AI+TA  +  K 
Sbjct: 389 EAAKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKG 448

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           DV++VAGKGHE    +  G K    D + +REI 
Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481


>gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 483

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 263/476 (55%), Gaps = 32/476 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V  DSR  +  ++F+AI G K DG  ++ +AI  GA A+V      ++++       
Sbjct: 22  ISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAVAVVTDR--EIKEYPGI---- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           T +LV D  R  ++  AS  Y        ++ VTGT+GK+SV   ++ I +R    + ++
Sbjct: 76  TTVLVED-ARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D  +    TTP  + L +  S + ++GV +V +E SSH L  +R+D  +
Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVDECE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+HQ  + Y   K +LF+     +S ++I  DD YS  +++ +   
Sbjct: 192 FDIAVFTNLSQDHLDFHQNMEEYAKTKGKLFK---MAKSASVINIDDKYSSMMIESSK-- 246

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +VL+ G +   ++  K +    +  +  + +E K  +    +PG F VYNAL A  + 
Sbjct: 247 -AKVLTYGIKDFAYVMAKDIRNSLSGVKFKVQIEDKKEEISLKIPGIFSVYNALAAITVA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI    V E L ++  V GRFE V T  +   + +DYAHT + ++ I++ ++   +G
Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFELVET-GKDFYVIIDYAHTPDGIQNIMEALKEYKTG 363

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R I++FG GGDRD+ KRP+MG++A   AD  I+T DNPRSEDP +I ++I  GI      
Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKTNCP 423

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
           ++   NR EAI  A+    K DV+++AGKGHET  I+  G+K +  D  +I++EIL
Sbjct: 424 YVVIENRKEAISYALTNAQKDDVIILAGKGHETYQII--GDKVIHFDEREIVKEIL 477


>gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
          Length = 477

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 255/477 (53%), Gaps = 31/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+++  DSR I+   +FVAI G   +GH +I +A++ GA AI+       ++  + I + 
Sbjct: 14  ISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGAIAIIC------EELPSNIVNG 67

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V +T + L+  ++  +     NI  + VTGT+GK+++AS + Q+ +++G   +++
Sbjct: 68  VTYIKVKDTNEALAFLSANYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKAG---YKV 124

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  ST+     +       TTP  + L   L  +   G     +E SSHG+ Q R + ++
Sbjct: 125 GLLSTVKIMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKRTEALQ 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            + G FTNL  DH+DYH T   Y + K   F+ L  K++ AI   DD     +++   N 
Sbjct: 185 FVGGVFTNLSHDHLDYHNTFAEYRDVKKSFFDGL-SKDAFAITNIDDKNGAIMLQ---NT 240

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             + LS   +    +      I   Q   + ++  D +    L G F  YN L   G+ +
Sbjct: 241 KAKKLSYALKS---YADYKAQILENQLSGLLLKINDNEVWVKLIGSFNAYNLLAIYGVAV 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382
            +GID    L  L +L  V GRF+F+ ++ +   I VDYAHT ++LE +LK I  I +  
Sbjct: 298 ELGIDKMEALRLLSELESVSGRFQFIVSDLKITAI-VDYAHTPDALENVLKTIEDIRTKN 356

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440
            ++I V GCGGDRD+ KRPIM  IA  L+D AI T DNPR+E+PE I  E+  G+ P   
Sbjct: 357 EQLITVVGCGGDRDKTKRPIMANIASSLSDKAIFTSDNPRTENPETIIEEMEKGVEPQNF 416

Query: 441 EKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +K     +R +AI+TA ++ N  D++++AGKGHET   + NG +    D  II E+L
Sbjct: 417 KKTVSILDRKQAIKTACQLANPNDIILIAGKGHETYQEI-NGLRHDFDDLKIITELL 472


>gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae L20]
 gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 500

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA A+V++ A   QD     A
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77

Query: 85  TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   R+   +++V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q 
Sbjct: 78  KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL 
Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E
Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313
            + +  +A        +  +   +K      + Q V I+ E    + +    L G F V 
Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370
           N L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE
Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A
Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435

Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I++G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483


>gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
 gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
          Length = 487

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 263/478 (55%), Gaps = 33/478 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR +    +FVAI G + DGH +I +A+ QGA AI+  +        + I + 
Sbjct: 24  IRNINFDSRQVGLDDVFVAIKGVQSDGHDYIKKAVDQGAIAIICET------IPSEIING 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V+++++ L++ A   YG     I  + VTGT+GK+++A+ +  +   +G   ++ 
Sbjct: 78  ITYIQVEDSQEALAIMADNYYGNPSAQIKLVGVTGTNGKTTIATLLYNLFMAAG---YET 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  ST+       +     TTP  + + + L  +   GV++  +E SSHG+ Q R +G+ 
Sbjct: 135 GLLSTVKIMVGKQQYKATHTTPDSLTINRYLREMVDAGVSYCFMEVSSHGIHQKRTEGLT 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL  DH+DYH+  + Y + K + F++L  K + A++ ADD   K  M    N 
Sbjct: 195 FAGGIFTNLSHDHLDYHKDFKEYRDVKKKFFDQL-SKTAFALVNADD---KNGMVMLQNT 250

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +   V Y  K +   K   + N+ Q + + ++G++      L G F  YN L      
Sbjct: 251 SAK--KVTYALKSMADHKAQILENQLQGLLLKLDGQEL--WVKLIGNFNAYNVLAIYATA 306

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+++   L+ +  L  V GRF++  +N++   + VDYAHT ++L+ +L+ I TI +G
Sbjct: 307 ELLGLETIETLQLISTLESVDGRFQYFISNTKVTAV-VDYAHTPDALKNVLETINTIRTG 365

Query: 383 --RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439
             ++I V GCGGDRD  KRPIMGKIA  L+  AI T DNPR+E PE I  +I  G+ P  
Sbjct: 366 NEQLITVVGCGGDRDVTKRPIMGKIAAQLSTKAIFTSDNPRTEQPEAIIEQIEAGVEPID 425

Query: 440 IEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +K     +R +AI+TA ++ N+ D++++AGKGHET   V  GE+    D  I++++L
Sbjct: 426 FKKTLSITDRKQAIKTACQLANENDIILIAGKGHETYQEV-QGERTDFDDYKIVKQLL 482


>gi|255325349|ref|ZP_05366455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297914|gb|EET77225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
          Length = 511

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 242/469 (51%), Gaps = 33/469 (7%)

Query: 32  EVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           EVS+   DS  +  G +F A+ G +  G  F     A      V++ A  L D     + 
Sbjct: 23  EVSACGLDSSRLPEGALFAALPGTRVHGAQFARDTKA----GAVLTDAAGL-DLLTKDQE 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
             PI+VV++ R  L   ++ +YG HP   L V G +G S   +    ++     +G S  
Sbjct: 78  TRPIVVVEDIRAVLGPISAEIYG-HPTRDLTVIGVTGTSGKTTTSYLLEAGLLHAGHSVG 136

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG T T I+       LTTP    L +  + + ++GVTHV +E SSH L+  R+ G + 
Sbjct: 137 LIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVMEVSSHALELGRVRGTRF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FTNL +DH+D+H T + YF AK +LF      E  A++  DD + + +   A +AG
Sbjct: 197 AVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAER-AVLCIDDEWGERMRGVAKSAG 255

Query: 265 CRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             V +V  QG    +   +        Q+V ++ +G DF F  PLPGEF + NA +A G+
Sbjct: 256 HPVTTVATQGAAATISARQTATEATGAQEVALNYDGADFTFRLPLPGEFNIANACLALGM 315

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIR-- 377
             A+G D A  L  +EK+  VPGR E +    RG      VDYAH   ++  +L  +R  
Sbjct: 316 ATAVGEDPAEFLSGVEKV-AVPGRMERI---DRGQDFVAVVDYAHKPAAIAAVLDTLRGQ 371

Query: 378 -TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
              T+GR+ +V G GGDRD  KRPIMG  A   AD+ +VTDDNPRSEDP  IRA ++ G 
Sbjct: 372 LEGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPRSEDPATIRAAVVEGA 431

Query: 437 -----PGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
                 G I E G+R  AI   ++     D ++V GKGHE   +V NG+
Sbjct: 432 RDAAPEGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV-NGK 479


>gi|311741524|ref|ZP_07715348.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303694|gb|EFQ79773.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 511

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 241/469 (51%), Gaps = 33/469 (7%)

Query: 32  EVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           EVS+   DS  +  G +F A+ G +  G  F     A      V++ A  L D     + 
Sbjct: 23  EVSACGLDSSRLPEGALFAALPGTRVHGAQFARDTKA----GAVLTDAAGL-DLLTEAQE 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
             PILVV++ R  L   ++ +YG HP   L V G +G S   +    ++     +G S  
Sbjct: 78  TRPILVVEDIRAVLGPISAEIYG-HPTRELTVIGVTGTSGKTTTSYLLEAGLLHAGHSVG 136

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG T T I+       LTTP    L +  + + ++GVTHV +E SSH L+  R+ G + 
Sbjct: 137 LIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVMEVSSHALELGRVRGTRF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FTNL +DH+D+H T + YF AK +LF      E  A++  DD + + +   A +AG
Sbjct: 197 AVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAER-AVLCIDDEWGERMRGVAKSAG 255

Query: 265 CRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             V +V  QG    +   +        Q+V +  +G +F F  PLPGEF + NA +A G+
Sbjct: 256 HEVTTVDTQGAAATISARQTATEATGAQEVALDYDGANFTFRLPLPGEFNIANACLALGM 315

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTI 379
             A+G D A  L  +EK+  VPGR E +    RG      VDYAH   ++  +L  +R  
Sbjct: 316 ATAVGEDPAEFLSGVEKV-AVPGRMERI---DRGQDFVAVVDYAHKPAAIAAVLDTLRGQ 371

Query: 380 ---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
              T+GR+ +V G GGDRD  KRPIMG  A   AD+ +VTDDNPRSEDP  IRA ++ G 
Sbjct: 372 LEGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPRSEDPATIRAAVVEGA 431

Query: 437 -----PGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
                 G I E G+R  AI   ++     D ++V GKGHE   +V NG+
Sbjct: 432 RDAAPQGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV-NGK 479


>gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL S4-378]
          Length = 491

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 236/467 (50%), Gaps = 41/467 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N+++ DSR +Q G +F+ I G   DGH F  +A+  GA AI+      +         
Sbjct: 22  EVNQIAQDSRKVQPGTLFICIDGEIVDGHQFANRAVQLGAVAIIAEKQLDV--------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P+L V ++++ +++ A   YG   +   ++ +TGT+GK++V+  V+QI + +G  +  
Sbjct: 73  SVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGL 132

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I     + + TTP  + L +    +   GV+   +E SSH L Q R+ G    
Sbjct: 133 IGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGRVYGSDYD 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260
              F NL +DH+DYH T + Y  AK  LF +L     L     A++ ADD   KE ++  
Sbjct: 193 VAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADD---KESVRMQ 249

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311
                 +++ G         K  A  +   + I+  G  FD   P         + G F 
Sbjct: 250 TATAAHIITFGI--------KEPADFSASNIQITSHGSTFDLKTPVGDFSLKIKMIGNFS 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYN L A     A+ I     +  +E +  V GRFE V    +   + VDY+HT +SL  
Sbjct: 302 VYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNA-GQDFPVIVDYSHTPDSLLN 360

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I T DNPRSEDP  I  +
Sbjct: 361 VLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIED 420

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +  G+PG   ++   NR +AIR A+ M    DV+++AGKGHE   ++
Sbjct: 421 MTQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGHEDYQVI 467


>gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
 gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
          Length = 486

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 268/514 (52%), Gaps = 54/514 (10%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L+DLI   + P L+   ++         I  + SDSR +  G +FVA+ G   DGH +
Sbjct: 1   MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
           +  AI +GA AIV   A S       +      +VV ++ + L L  SR YG  P     
Sbjct: 53  MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+++A+ + ++ ++ G    ++G  ST+ ++     +    TTP P+ L  
Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++ +   G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK +
Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286
            F++ LP  + A+  ADD  S  VM +   A     S+     ++GK +  H +    I 
Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N ++V +   G+           F  YN L   G  +++G D   VL  L  L  V GRF
Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404
           E +  +  G    VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K
Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQ 459
            A  L+D  I+T DNPR E+P+ I  +++ G+    +E+     +R +AI+TA  +  K 
Sbjct: 389 EAAKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKG 448

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           DV++VAGKGHE    +  G K    D + +REI 
Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481


>gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
 gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
          Length = 500

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 178/500 (35%), Positives = 253/500 (50%), Gaps = 27/500 (5%)

Query: 18  LSIFPM--QWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           LS FP    W E K +N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA  ++  
Sbjct: 5   LSFFPALESWAELKTLNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAE 64

Query: 75  SAYSLQ------DFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           +   +Q       F+    + T  +L V N  K LS  A   YG   E   ++ +TGT+G
Sbjct: 65  ADDDVQAVRLAEKFAKNHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNG 124

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ A    Q     G  S  +G     +    Q+   TT S I + + L+     G   
Sbjct: 125 KTTTAQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADF 184

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q+R + +      FTNL RDH+DYH T + Y  AK RLF EL  K+   
Sbjct: 185 CAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ-- 242

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFD 301
           +I ADD   +E + +   A        +Q +     K  A+    Q  TI VE    + +
Sbjct: 243 VINADDEIGREWLAKLPEAVAVSTDSQFQPQQARWVKAKAVQFTLQGATIEVESSWGNGE 302

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRI 358
               L G F V N L A    +A+G D   ++E    L+ V GR E + +         +
Sbjct: 303 LKSRLIGAFNVSNLLTAFAGLLALGYDLQKLIETAPLLNGVCGRMECLISEENPEESPMV 362

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L   R    G +  VFGCGGDRD GKRP+M +IA  LAD  IVTDD
Sbjct: 363 IVDYAHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADKVIVTDD 422

Query: 419 NPRSEDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+EDP+ I  +I+ G   P  ++  + R  AI  AI     +DV+++AGKGHE   I+
Sbjct: 423 NPRTEDPDVIFNDIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQII 482

Query: 476 TNGEKKMSV-DCDIIREILG 494
             G KK    D +  ++ LG
Sbjct: 483 --GTKKYHFSDQEWAKKFLG 500


>gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
          Length = 484

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 278/511 (54%), Gaps = 54/511 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+          +S       E +I  +++DSR    G +FV I G + DGH F 
Sbjct: 1   MKLQNLL--------RDVSYTGGALPEFEITGITADSRKAGPGVVFVCIPGERADGHDFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A A G+ A++     +L+D  A +    P ++V +TR   +L  +  +G+  E +  +
Sbjct: 53  ASAAAAGSPAVL-----ALRDTGAPV----PHILVKDTRLAYALCCANFFGRPAERLRMV 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKAL 174
            VTGT+GK++  + +++I + +G  S  IG   TI + A      + LTTP P    + L
Sbjct: 104 GVTGTNGKTTTTTLLKEILEYNGHKSGLIG---TIVNMAGGKTLPSHLTTPEPYEFQQLL 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ +G     +E SSH L Q R+ G    A  FTNL +DH+D+H+T + Y  AK +LF
Sbjct: 161 KTIADEGCEFAVMEVSSHALAQERVAGCHFEAAVFTNLTQDHLDFHKTMENYLEAKEKLF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     I+  DD Y+ E+++    A C+  +V Y  ++++     A +  + + + 
Sbjct: 221 SMC----DLGIVNVDDDYAPEIIR---TAKCK--TVTYSARYMN-----ADYTARNIKLK 266

Query: 295 VEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +G +++ +          P+PG F VYN L AA   +++GI    VLE L ++  V GR
Sbjct: 267 NDGVEYEMVGNALIGRVSVPIPGAFSVYNTLAAAAAAVSLGIPFKQVLEALHQVKGVKGR 326

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V T  R   + +DYAHT ++LE ILK+IR    GR++ +FGCGGDRD+ KRPIMG +
Sbjct: 327 IEVVPT-GRNFTVIIDYAHTPDALEKILKSIRGFAKGRVVALFGCGGDRDKTKRPIMGMV 385

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVL 462
           A   AD  IVT DNPR+EDP+ I  +I+ G+ G   ++   NR EAI  A++   K D++
Sbjct: 386 AGRGADFCIVTSDNPRTEDPQAIIDDILPGMDGPAPYVVVPNRREAIAYALKNAQKDDIV 445

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHE   I+   EK    + +++ EIL
Sbjct: 446 LLAGKGHEDYQIIGR-EKHHFDEREVVAEIL 475


>gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 487

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 169/504 (33%), Positives = 261/504 (51%), Gaps = 38/504 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   E +      P       +N +  DSR +    +FVAI G + DGH FI +
Sbjct: 4   LKDILYKVTLESVTGNPNVP-------VNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A  QGA AI+       +DF   I      +   +T + L++ AS  Y    EN+  + +
Sbjct: 57  AEEQGAIAIICEQM--PEDFVNGI----TYVQTSDTAQALAVMASNYYENPSENLKLVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176
           TGT+GK+++A+ + Q+  ++G   F+ G  ST+     D       TTP  + + K L+ 
Sbjct: 111 TGTNGKTTIATLLHQLFTKAG---FKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAM 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  GV +  +E SSHG+ Q R +G+    G FTNL  DH+DYH+T   Y + K   F+ 
Sbjct: 168 MNEAGVEYCFMEVSSHGIHQKRTEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKKSFFDN 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD   + +++       R   V Y  K     +   + N Q   + ++
Sbjct: 228 -LPKTAFALSNIDDKNGQVMLQN-----TRAKKVTYALKSFADYRAQILEN-QFTGLLLK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D +    L G F  YN L        +G+     L++L +L  V GRF+++ +  +  
Sbjct: 281 VNDQEVWVKLIGSFNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSGRFQYMISAKKIT 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            I VDYAHT ++L+ +L+ I  I +    +I V GCGGDRD+ KRP MGKIA  L+   +
Sbjct: 341 AI-VDYAHTPDALKNVLETINDIRTKNEELITVVGCGGDRDRTKRPKMGKIAAALSTKVV 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPRSEDP+ I  EI  G+     K      +R +AI+ A +M  + D++++AGKGH
Sbjct: 400 FTSDNPRSEDPDTIIEEIEAGVEPVDYKKTVAITSRKQAIKAACQMAEENDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   V NGE+    D  I++E+L
Sbjct: 460 ETYQEV-NGERTDFDDFKIVKELL 482


>gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 495

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 244/471 (51%), Gaps = 37/471 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ I +V++DSR + AG +F+ + G   DGH F+  A  +GA A +V      +D  A +
Sbjct: 22  DKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKGAVAALV------EDVPAEV 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
                ++ V +TR+ + L     Y  +P     ++ VTGT+GK++  + ++ I +++G  
Sbjct: 76  PQGVTLIKVADTREAMELVTPYFY-DYPGRKLRMIGVTGTNGKTTSTNIIRLILRKAG-- 132

Query: 144 SFQIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            +++G   TI+    D    +  TTP  + L K L  +   G  +  +E SSH L   R+
Sbjct: 133 -YKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDYCVMEVSSHALALKRV 191

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEV 256
            GI+      TN+ +DH+D+H+T + Y +AK  LFE L     P   A+   DD  S  +
Sbjct: 192 AGIEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPNKNAVFNMDDPSSAII 251

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +R       VL+ G      I+           Q+ +     + D    + GEF VYN 
Sbjct: 252 RERTK---ANVLTYGEGHDNDIYPLSFTVEPKHMQLLLHTPVGEMDLELKITGEFNVYNV 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMI 372
           +   G  +A  ID  ++   L+    VPGRF+ V      G+ Y   VDYAHT + LE +
Sbjct: 309 MGVIGAMLAENIDKDIIGSVLDGFDGVPGRFQLV----EAGQPYTVIVDYAHTPDGLENV 364

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK  R+IT G++ VVFGCGGDRD  KRP+MG +AL+LAD  +VT DNPR+EDPE I  EI
Sbjct: 365 LKTARSITRGKLWVVFGCGGDRDNKKRPLMGALALELADNIVVTSDNPRTEDPELIIDEI 424

Query: 433 ---IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
              +  +P         +R EAI  A+      DV+++AGKGHE   I+ +
Sbjct: 425 FTALQNVPAGKHVTRLSDRREAICYALAEAADNDVILIAGKGHENYQILKD 475


>gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
 gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
          Length = 496

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 166/472 (35%), Positives = 254/472 (53%), Gaps = 39/472 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR    G +FV I G   D H FIP A   GA A++       +     +  
Sbjct: 24  EITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARAGARAVLT------ERDKVAVPP 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +L V + ++ L L     Y  +P     ++ +TGT+GK++ +  V+ + + +G    
Sbjct: 78  GISVLHVPDLQEALDLIVPYFY-DYPARAMRVIGITGTNGKTTTSYLVRAMLRHAGR--- 133

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI    +D+      TTP  I + + L+ + ++G+  V +E SSH LDQ R+ G
Sbjct: 134 RVGLIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDAVVMEVSSHALDQGRVAG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----EELLPKESPAIIYADDAYSKEVM 257
           I+     FTNL +DH+DYH+T + Y  AK RLF    E+ + +   AI+ ADDA +K  M
Sbjct: 194 IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKEGKTAILNADDAAAK--M 251

Query: 258 KRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNA 315
            RAH   C +++ G      +  +K+    +  ++TI+  G +   +   + G F VYN 
Sbjct: 252 MRAHTH-CPLITYGVDMPAALTARKIRLGQDGMELTIAYAGAELPAVQTGITGLFNVYNV 310

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMI 372
           L AAG  +A  + ++ +   L     VPGRFE V    R G+   + VDYAHT + +E +
Sbjct: 311 LAAAGAALAEQVTASDITAALAAFSGVPGRFELV----RAGQDFSVIVDYAHTPDGMENV 366

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+  R +T+GRII VFGCGGDRD+ KRPIMG+IA +L D+ ++T DNPR+EDP  I  E+
Sbjct: 367 LRTARAVTTGRIITVFGCGGDRDRTKRPIMGRIAAELGDVIVLTSDNPRTEDPAAILDEV 426

Query: 433 IHGI-PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             G+ P    K      +R  AI  A++     D +V+ GKGHET  I+ +G
Sbjct: 427 EAGVLPAIGGKPYEKLVDRRTAIFHAVQTARAGDTVVILGKGHETYQILKDG 478


>gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
 gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
          Length = 486

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 268/514 (52%), Gaps = 54/514 (10%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L+DLI   + P L+   ++         I  + SDSR +  G +FVA+ G   DGH +
Sbjct: 1   MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
           +  AI +GA AIV   A S       +      +VV ++ + L L  SR YG  P     
Sbjct: 53  MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+++A+ + ++ ++ G    ++G  ST+ ++     +    TTP P+ L  
Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++ +   G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK +
Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286
            F++ LP  + A+  ADD  S  VM +   A     S+     ++GK +  H +    I 
Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N ++V +   G+           F  YN L   G  +++G D   VL  L  L  V GRF
Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404
           E +  +  G    VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K
Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQ 459
            A  L+D  I+T DNPR E+P+ I  +++ G+    +E+     +R +AI+TA  +  K 
Sbjct: 389 EAAKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERVLCITDRTQAIKTATMLAKKG 448

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           DV++VAGKGHE    +  G K    D + +REI 
Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481


>gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
 gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
          Length = 951

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 244/476 (51%), Gaps = 46/476 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G +FVA  G   DG L+I +A+A GA A++  +  +     A +    P+L V
Sbjct: 34  DSRDIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPANDA--VAAVADQAPMLPV 91

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              R  L   A   YG+      ++AVTGT+GK+S   ++     R+      IG   T+
Sbjct: 92  TGLRALLGELADTWYGRPSAELAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIG---TL 148

Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +   D R     LTTP  + + + L+ +   G   V++EASS G++Q R+DG+++   +
Sbjct: 149 GAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALAA 208

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV- 267
           FTNL RDH+DYH T + Y  AK RLF    P  + A+I ADD   + ++     AG    
Sbjct: 209 FTNLTRDHLDYHGTMERYEAAKARLFR--WPGLTAAVINADDEAGRRLI-----AGLPAG 261

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           +++GY        ++ A    + +  + +G+ F  + P         L G   V N L+ 
Sbjct: 262 MAMGY--SLSADPEIPAGMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLV 319

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLE 370
           AG+   +G+  A +   L     V GR + V            RG  + VDYAHT ++L 
Sbjct: 320 AGVLYQLGLPFAQIARELAATDPVDGRLQTVEPVAHSTQAATGRGALVVVDYAHTPDALA 379

Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L  +R +    SGR+I +FGCGG+RD GKRP MG+IA DLAD  +V+ DNPR+E PE 
Sbjct: 380 RALSALRAVATARSGRLICLFGCGGERDPGKRPEMGRIAADLADHVVVSSDNPRTESPEA 439

Query: 428 IRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           I  +I+ GIP  +      +R  AI   I      DV+++AGKGHET   +  GEK
Sbjct: 440 IVEQILAGIPDSVRPDVQVDRARAIMQTIWAAAPDDVVLLAGKGHETYQDI-GGEK 494



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 30/291 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+D+R I  G +FVA+VG   D H ++ QA A+GA A VV+ A            
Sbjct: 511 QIKGVSTDTRRIGQGELFVALVGENFDAHNYLDQAEARGACAAVVAHAVPDAKL------ 564

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-- 146
             P LV+ +TR  L    +    +    ++AVTG++GK++    +  +     L+ +Q  
Sbjct: 565 --PQLVLGDTRIALMRIGAAWRAQFALPVVAVTGSNGKTTTKEMISAM-----LAEWQGE 617

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +T  +   D        I +   L  L  +    V     +H  +  +L  I    
Sbjct: 618 AGRLATAGNLNND--------IGVPLTLLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPT 669

Query: 207 GSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            +  TN  R+H ++  + +A  +         LP++  A+   D+ YS   +  A     
Sbjct: 670 VALVTNAQREHQEFMHSVEAVAHENGAAIAA-LPEDGVAVYPGDEPYS--AIWDALAEPR 726

Query: 266 RVLSVGYQ-GKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           RVL  G Q G  ++ +++ A +H  +   ++  G   D   P+PG   + N
Sbjct: 727 RVLRFGLQPGLDVYAEQILADVHATRCRVVTPMGV-ADLTLPVPGLHNLRN 776


>gi|283850519|ref|ZP_06367807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
 gi|283574090|gb|EFC22062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
          Length = 487

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 156/473 (32%), Positives = 248/473 (52%), Gaps = 22/473 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+  S  +  G +FVA+ G   DG  FIP A+A+GA A VV+   ++    AT R    +
Sbjct: 24  VAGHSAKVLPGGVFVAVAGPVADGERFIPDALARGA-AHVVAGPGTVLPAGATAR----L 78

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +V +N +  L   A+  YG  +    + A+TGT+GK+++   ++++   +G    ++G  
Sbjct: 79  VVAENPKAALGRLAAARYGTDRMAMPVAAITGTNGKTTITYLIERLATAAGR---KVGVL 135

Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T++      +++  LTTP  + + + L+ + + G     +EASSH + Q RL G+   A
Sbjct: 136 GTVAYRWPGVSRNASLTTPDCLTIHENLAAMHAAGCDLAVMEASSHAIAQDRLAGLAFAA 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL +DH+DYH+  ++YF AK  LF   L     A++  DD + + +++    A   
Sbjct: 196 GIFTNLTQDHLDYHKDMESYFEAKAGLFRRYLADPRNAVLNFDDPFGRRLLEEFPQALGY 255

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIA 324
            L+    G    L      H ++   + V   D       P+PG     N L A G  + 
Sbjct: 256 GLTAPPAGFPRILAGTVLGHGREGQRLDVRHGDAAHAVASPMPGRHNAQNVLAAMGAALV 315

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+ +A      +  H  PGR E +  N R   ++VDYAHT ++LE +L   R  T G++
Sbjct: 316 LGLPAAAFAALAD-CHGAPGRLERI-ANPRDLTVFVDYAHTPDALENVLGAAREFTKGKL 373

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441
             VFGCGGDRD+ KRP+M       AD+A++T DNPR EDP  I A+   G+ G    + 
Sbjct: 374 FAVFGCGGDRDRTKRPLMAAAVARFADVAVLTSDNPRHEDPLAIMADARPGLAGARRAVA 433

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + +R  AI  A+  +  +DVLV+AGKGHET   + + +   S D  ++RE+ G
Sbjct: 434 EPDRRRAIGLALSEMGPEDVLVIAGKGHETYQQIGDVKHPFS-DAAVVRELTG 485


>gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 488

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 168/481 (34%), Positives = 256/481 (53%), Gaps = 29/481 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E++ DSR  +AG +F+AI G++ DG  +IPQA+  GA A++  +  + Q         
Sbjct: 18  LTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQQHLQVHYEQG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P++      + LS  A   Y ++P     ++ VTGT+GK++ A  + Q  Q  G +   
Sbjct: 78  IPLIAFYRLSENLSRLADVFY-QYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTGAV 136

Query: 147 IGPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI +  F Q  +   TT S + +  +L+   ++G    ++E SSHGL QHR++ +
Sbjct: 137 MG---TIGNGLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESV 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  FTNL RDH+DYH T + Y  AK RLF EL  +    II ADD      +    +
Sbjct: 194 HFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQ--IIDADDPVGAVWLAEMPH 251

Query: 263 AGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNA 315
           A    ++V  +  F+      LK V    N +  TI  E    + +   PL G F V N 
Sbjct: 252 A----VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNL 307

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+     + +    + ++  + KL  V GR E + T  +   + VDYAHT ++LE  L+ 
Sbjct: 308 LLVTATLLTLDYPLSGLINSVHKLTGVCGRMEMLHTPQKP-TVIVDYAHTPDALEKALQA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  +FGCGGDRD GKRP+M KIA  LAD  I TDDNPR+E+P+KI A+I++G
Sbjct: 367 ARLHCRGKLWCIFGCGGDRDSGKRPLMAKIAEQLADHVIATDDNPRTEEPKKIMADILNG 426

Query: 436 I--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              P  ++    R +AI TAI+   + DV+++AGKGHE   I+   +   S D +++R  
Sbjct: 427 FVHPQSVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQIIGKTKYHFS-DQEVVRNY 485

Query: 493 L 493
           L
Sbjct: 486 L 486


>gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 500

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA A+V++ A   QD     A
Sbjct: 19  KPLKQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77

Query: 85  TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   R+   +++V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q 
Sbjct: 78  KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL 
Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E
Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313
            + +  +A        +  +   +K      + Q V I+ E    + +    L G F V 
Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370
           N L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE
Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A
Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435

Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I++G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQTNEKDVILIAGKGHEDYQII 483


>gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Bacteroides fragilis 638R]
          Length = 485

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 158/489 (32%), Positives = 260/489 (53%), Gaps = 45/489 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  DSR +++G +F+A+ G + DGH +IP A+ +GA AI+       ++  A +  
Sbjct: 22  EITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILC------EELPAELAE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               + V ++   +   A+  YG +P +   ++ VTGT+GK+++A+ +    +  G   +
Sbjct: 76  GVTYIQVADSEDAVGKAATTFYG-NPSSKLELVGVTGTNGKTTIATLLYNTFRYFG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G  ST+ ++  D  +    TTP PI L + L  ++ +G  +V +E SSH + Q R+ G
Sbjct: 132 KVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257
           +K   G FTNL RDH+DYH+T + Y  AK + F++ +PK S ++   DD      ++   
Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNSFSLTNLDDKNGLVMTQNTK 250

Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            + +    R LS  ++G+ +  H + +    N  ++ +   GK           F   N 
Sbjct: 251 SKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNL 298

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L   G  + +G     VL  L  LH V GRF+ +  + +G    VDYAHT ++L  +L  
Sbjct: 299 LAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYAHTPDALVNVLNA 357

Query: 376 IRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           I  +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++
Sbjct: 358 IHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDIINDML 417

Query: 434 HGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            G+    +K      +R EAIRTA  +  K DV++VAGKGHE    +  G K    D ++
Sbjct: 418 AGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQDI-KGVKHHFDDKEV 476

Query: 489 IREILGLIL 497
           ++EI  L +
Sbjct: 477 LKEIFSLTV 485


>gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 500

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA A+V++ A   QD     A
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77

Query: 85  TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   R+   +++V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q 
Sbjct: 78  KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL 
Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E
Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313
            + +  +A        +  +   +K      + Q V I+ E    + +    L G F V 
Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370
           N L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE
Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A
Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAVIAEELADKVIATDDNPRTEDNAKIMA 435

Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I++G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483


>gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
 gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
          Length = 496

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 175/488 (35%), Positives = 243/488 (49%), Gaps = 25/488 (5%)

Query: 25  WRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-- 80
           W E   ++ +++ DSR +QAG +FVA+ G++ DG  FIP AI QGA AI+++ A   Q  
Sbjct: 14  WVEELTELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGA-AIILAEADEDQPE 72

Query: 81  --------DFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                    F+    +   ++ V    K LS  A  LY    H   +  +TGT+GK++ A
Sbjct: 73  IELDPKFAKFNLDRTACCKVVSVPRLPKLLSEIAGALYHNPSHKLTLAGITGTNGKTTTA 132

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + Q     G  S  +G     +    Q+   TT S I +   L+     G    ++E 
Sbjct: 133 QLLAQWHNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEV 192

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL Q R + +      FTNL RDH+DYH T + Y  AK RLF EL  K    +I AD
Sbjct: 193 SSHGLAQFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQ--VINAD 250

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLP 307
           D   +E + +  NA        + G    +K        Q  +I+ E    + +    L 
Sbjct: 251 DEIGREWLTQLPNAVAVSTDPKFAGNHQFVKATAVKFTLQGASIAFESSWGNGELHSRLI 310

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A    +A+G D   +++    L  V GR E + T      + VDYAHT +
Sbjct: 311 GAFNVNNLLTAFAGLLALGFDIQELVKTAPNLVGVAGRMECI-TAPNKPMVIVDYAHTPD 369

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+  R    G +  +FGCGGDRD GKRP+M  IA  L D  I TDDNPR+ED +K
Sbjct: 370 ALEKALQAARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQK 429

Query: 428 IRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I A+I+ G   P  I   NR EAI+TAIE     DV+++AGKGHE   I+   EK    D
Sbjct: 430 IMADIVKGFSKPQQIIH-NREEAIKTAIEQAKATDVILIAGKGHEDYQIIGT-EKLHFSD 487

Query: 486 CDIIREIL 493
            +  R+ L
Sbjct: 488 QETARKYL 495


>gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 471

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 167/491 (34%), Positives = 258/491 (52%), Gaps = 45/491 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            + +E  ++ V SDSR I+AG++FVAIVG + DGH  I ++I  GA+ I+       Q  
Sbjct: 5   FEGKELSLSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIIC------QTL 58

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139
             T+R +   + V ++ K L    S L+   P     ++ VTGT+GK++V + + ++ ++
Sbjct: 59  PVTLRPDVTYICVKDSAKALGQIVS-LWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRK 117

Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            G   +++G  STI +   D  +    TTP  I L   L  + S+G  +V +E SSH +D
Sbjct: 118 LG---YKVGLISTICNCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAID 174

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+ G++   G FTNL RDH+DYH+T   Y + K   F +LLP  + A+   DD     
Sbjct: 175 QKRIAGLQFKGGIFTNLTRDHLDYHKTFDIYRDVKKTFF-DLLPTGAFALANKDD----- 228

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGE 309
                 N    + +     KF  L+ +    ++          +++  K+   L  L G+
Sbjct: 229 -----KNGAFMLQNTKAHKKFYSLQSLADFKSRILESHFNGTLMTINDKELSTL--LVGK 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F  YN L   G  I +G +S  +L  L  L  V GRFE +   SRG  + VDYAHT ++L
Sbjct: 282 FNAYNLLAIYGTAILLGQNSDEILVLLSVLRPVIGRFETLNA-SRGFTVIVDYAHTPDAL 340

Query: 370 EMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +L  I  I +  G+II V GCGG+RD+GKR IM + A+ L+   I+T DNPR E+P  
Sbjct: 341 INVLNTINEILARKGKIITVIGCGGNRDKGKRSIMAREAVRLSQKVILTSDNPRFEEPGD 400

Query: 428 IRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           I  +++ G+    +K      +R EAIRTA  +    D++++AGKGHE    +  G K  
Sbjct: 401 IIEDMLAGLDDIQQKETICIVDRKEAIRTACLLAQPNDIVLIAGKGHEDYQEI-KGVKNH 459

Query: 483 SVDCDIIREIL 493
             D  ++ EI+
Sbjct: 460 FNDKKVVMEII 470


>gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya zeae Ech1591]
 gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591]
          Length = 494

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 176/489 (35%), Positives = 252/489 (51%), Gaps = 31/489 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVAIVG+K DG  +IPQAIAQG  A+V  +  +  D + T 
Sbjct: 19  ERALREMTLDSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVAAVVAQADEATPDGTLTE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +D+    LS  A R Y + P + L + G +G +   +  Q + Q S      
Sbjct: 79  MHGVPVIYLDDLNLRLSALAGRFY-RQPSSSLQLVGVTGTNGKTTTTQLLAQWSQ----A 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + + + LS L +QG    ++E SSHGL QHR
Sbjct: 134 LGKTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLVAQGANFAAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +   A  FTNL RDH+DYH     Y  AK RLF E   +    II ADD   +  + 
Sbjct: 194 VEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAE--HQVGQKIINADDEVGRRWLS 251

Query: 259 RAHNAGCRVLSVGYQG-------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           R  +A    ++V   G       +++   ++    +   VT             L GEF 
Sbjct: 252 RLPDA----VAVSVTGEIDSARARWLKATRIDYHDSGFTVTFDSSWGGGAINSRLMGEFN 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +++G     ++E    L  V GR E    + R   + VDYAHT ++LE 
Sbjct: 308 VSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLADGR-PTVVVDYAHTPDALEK 366

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L   R    G +  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSEDP+ I  +
Sbjct: 367 ALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDPQAIVTD 426

Query: 432 IIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I+ G+   G ++    R EA+ +A+      DV++VAGKGHE   +V N E+    D   
Sbjct: 427 ILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGN-ERLDYSDRIT 485

Query: 489 IREILGLIL 497
           +  +LG+I+
Sbjct: 486 VARLLGVIV 494


>gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
 gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
          Length = 484

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 156/483 (32%), Positives = 257/483 (53%), Gaps = 39/483 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I+ ++ DSR I+ G IF+A+ G + DGH +I +AI +GA  +V       ++   T+ 
Sbjct: 21  QEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            N   + V++T   +   A+  YG     +  + VTGT+GK+++A+ +  + ++ G   +
Sbjct: 75  ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G  ST+ ++  +  +    TTP PI L K L  ++ +G  +  +E SSH + Q R+ G
Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257
           +K   G FTNL RDH+DYH+T + Y  AK   F+  LPK + A+   DD      ++   
Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDS-LPKTAFALTNLDDKNGLVMTQNTK 250

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            + H    R LS  ++GK +       + +   V ++V+           G F   N L 
Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G    +G  +  VL  L  L  V GRF+ +  + +G    VDYAHT ++LE +L  I 
Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359

Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            + +G+  +I V G GG+RD+GKRP+M + A+  +D  I+T DNPR E+P++I  +++ G
Sbjct: 360 EVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I   +R EAIRTA  +   +DV++VAGKGHE    +  G K    D +++R
Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGVKHHFDDKEVLR 478

Query: 491 EIL 493
           +I 
Sbjct: 479 DIF 481


>gi|317489850|ref|ZP_07948344.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
 gi|316911048|gb|EFV32663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
          Length = 500

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 170/473 (35%), Positives = 253/473 (53%), Gaps = 21/473 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++N ++  S  +Q G  F  +VG   DGH F   AI +GA+ +VV     L D     
Sbjct: 21  DDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGAKVLVVERKVYLAD----- 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
            ++   +VV +TRK ++  A+  Y  HP   LA+ G +G +   +    V+ I + +G  
Sbjct: 76  ATDVTEIVVKDTRKAMAAAAANFY-DHPSKDLALVGITGTNGKTTTTYLVEHIARVAGKR 134

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     I   A+ +  TTP    L + L+ +       V++E SSH LD  R    
Sbjct: 135 TGVIGTVGIRIGDEAEKSAHTTPESPDLQQLLARMRDARCDVVAMEVSSHALDLDRTWDA 194

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                +F+NL +DH+DYH T +AYF AK RLF +  P +   +I  DD + KE+++R   
Sbjct: 195 AFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKR--VICIDDKWGKELLRRCSV 252

Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           A   V++ G+     IH   V        VT+ V G    F +PL G+F V N + A G+
Sbjct: 253 AEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVGKFNVENVMCAFGI 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTIT 380
            + +G  +  ++E LE+   +PGR E V   + GG  ++VDYAHT ++LE  L +I  +T
Sbjct: 313 GLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPDALEKALASIMALT 372

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            GR + VFGCGGDRD  KRPIMGK AL  AD A+VT DNPR+EDP+ I  +I+ G+    
Sbjct: 373 PGRTVCVFGCGGDRDASKRPIMGKAAL-AADHAVVTSDNPRTEDPQAIIEDIVSGMSSGA 431

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             F  + +R  AI  AI      D +++AGKGHE   +V  G++ +S D  I+
Sbjct: 432 GRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLV--GDQVLSFDDRIV 482


>gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
          Length = 952

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 244/480 (50%), Gaps = 44/480 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G +FVA  G   DG L+I +A+A GA A++  +  S  D       +TP+L V
Sbjct: 34  DSRDIEPGDVFVACPGLSSDGRLYIDKALALGASAVLFEAPGS--DALQAAAGSTPMLPV 91

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              R  L   A   YG+      ++AVTGT+GK+S   ++     R+      IG   T+
Sbjct: 92  TGLRALLGELADTWYGRPSAALAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIG---TL 148

Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +   D R     LTTP  + + + L+ +   G   V++EASS G++Q RLDG+++   +
Sbjct: 149 GAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAQAVAMEASSIGIEQGRLDGVRVALAA 208

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y  AK RLF    P  + A++ ADD   + ++         + 
Sbjct: 209 FTNLTRDHLDYHGTMERYEAAKARLFN--WPGLTAAVVNADDEAGRRLLATLPTG---MA 263

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVAA 319
           ++GY         + A    + +  + +G+ F  + P         L G   V N L+ A
Sbjct: 264 AMGY--SLSDSPDIPAAMRARDLQATSQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVA 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEM 371
           G+   +G+  A +   L     V GR + V         +  RG  + VDYAHT ++L  
Sbjct: 322 GVLYKLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQSSAGRGALVVVDYAHTPDALSR 381

Query: 372 ILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L  +R +    SGR+I +FGCGG+RD GKRP MG+IA  LAD  +V+ DNPR+E P+ I
Sbjct: 382 ALTALRAVAVARSGRLICLFGCGGERDPGKRPEMGRIAAQLADHVVVSSDNPRTESPQDI 441

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ GIP       + +R  AI   I   +  DV+++AGKGHET   +  G  K+  D
Sbjct: 442 IDQILAGIPPAANVDVQVDRARAIMQTIWSASPDDVVLLAGKGHETYQDI--GGDKLPFD 499



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 163/375 (43%), Gaps = 32/375 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ VS+D+R I  G +FVA+VG   D H ++ QA  +GA A VV+ A S         S
Sbjct: 512 QVSGVSTDTRRIGPGELFVALVGENFDAHNYLDQAEGRGACAAVVAHAVS--------DS 563

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LV+ +TR  L    +    +    ++AVTG++GK++    +  +     L+ +Q G
Sbjct: 564 KLPQLVLGDTRIALMRIGAAWRAQFTLPVVAVTGSNGKTTTKEMISAM-----LAEWQ-G 617

Query: 149 PTSTISSFAQ-DNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +  +++    +N +  P  +   +A   + +   G+ H    A    L       + L+
Sbjct: 618 ESGRLATAGNLNNDIGVPLTLLRLRAEHRAAVFELGMNHPGEIAQ---LAAMAAPTVTLV 674

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN  R+H ++  T +A  +         LP +  A+   D+ Y    +  A     
Sbjct: 675 ----TNAQREHQEFMHTVEAVAHENGAAIAA-LPDDGVAVYPGDEPYC--AIWDALAEPR 727

Query: 266 RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           RVL  G Q G  ++ +++ A  +  +  +       D   P+PG   + NAL A    IA
Sbjct: 728 RVLRFGLQPGLDVYAEQILADVDSTRCRVVTPVGVADLALPVPGLHNLRNALAAIASAIA 787

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
            G+     +  L +   V GR +    +   G + +D  + +N  S+ + +  +  I   
Sbjct: 788 SGVPLDCAVRALSRFAPVAGRMQHKKMSD--GTLLIDDTYNANPDSVRVAIDVLARIAGT 845

Query: 383 RIIVVFGCGGDRDQG 397
           R++V+   G   D G
Sbjct: 846 RVLVLGDMGEIGDNG 860


>gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
 gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
          Length = 493

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 160/493 (32%), Positives = 255/493 (51%), Gaps = 18/493 (3%)

Query: 17  QLSIFPMQWRERK----INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           QLS   + W E      I+ ++ DSR +  G +FVAI G+  DG  FI  AI QGA A++
Sbjct: 3   QLSELLLSWCELNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQGAVAVI 62

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVA 130
             +       +  + +N  ++ +D+    LS  A   Y   K    ++ +TGT+GK++++
Sbjct: 63  ADADEDNIAGTVKVINNAIVVYIDSLYTQLSAIAGAFYQADKRCMQLVGITGTNGKTTIS 122

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + Q        +  +G T   + S  +    TT SPI + + L+ L + G    ++E 
Sbjct: 123 QIIAQWTTLLDQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAKLTALEV 182

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL Q R++ +   A  FTNL RDH+DYH   + Y  AK  LF    PK S  II AD
Sbjct: 183 SSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMENYAEAKKLLFTSHRPKHS--IINAD 240

Query: 250 DAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           D    + +K   +A    L+      + GK +    V       Q+++S +  +  F  P
Sbjct: 241 DQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIQLSVSSDWGNVAFSVP 300

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F   N LVA    +++G D   + +   +L+ V GR E    +++  ++ VDYAHT
Sbjct: 301 LIGAFNASNILVAFATLLSLGYDIQALAQTASQLNAVIGRMELFTADNKA-KVVVDYAHT 359

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L+  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD+ I++DDNPRSE+P
Sbjct: 360 PDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVIILSDDNPRSEEP 419

Query: 426 EKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             I  +++ G+          +R EA + A+   N+ D++++AGKGHE   ++ +     
Sbjct: 420 SLITNDMLAGLKNSESAHVIHDRFEACQFALSQANENDIILLAGKGHEDYQVLADKTVYY 479

Query: 483 SVDCDIIREILGL 495
           S D +  + +LGL
Sbjct: 480 S-DRETAQTLLGL 491


>gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate
           ligase [Pseudomonas fluorescens SBW25]
          Length = 487

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 171/478 (35%), Positives = 251/478 (52%), Gaps = 36/478 (7%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           IF    R+  I E++ DSR+++AG +F+A+ G K DG   I  A+ +GA A+    AY +
Sbjct: 8   IFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAV----AYEV 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
           +  +    ++ P++ V    K LS  A R YG      N++ VTGT+GK+SV   V Q  
Sbjct: 64  EGATVLPITDVPLIPVKGLAKQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQAL 123

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G          Q    TTP+PI +   L+ L   G   V++E SSHGLDQ
Sbjct: 124 DLLGQHCGIVGTLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSK 254
            R+  +       TNL RDH+DYH T +AY  AK +LF   +L  +    ++  DDA+ +
Sbjct: 184 GRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAWNDLKCR----VVNLDDAFGR 239

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQV 312
           ++   A ++  R++S   +    +L    A  N + V  T+     +      L G F +
Sbjct: 240 QLA--AEDSEARLISYSLEDSSAYLFCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSN 367
            N L A G  +  G+D AL  +L  L KL    GR + +G    GG+   + VDYAHT +
Sbjct: 298 SNVLAAIGALL--GLDYALDEILRVLPKLEGPAGRMQRLG----GGKQPLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R    G+++ +FGCGGDRD+GKRP+M +I   LAD  +VTDDNPRSEDP +
Sbjct: 352 ALEKVLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQ 411

Query: 428 IRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           I  +I  G        F+    R  AI   I   +  DV+V+AGKGHE    + NGE+
Sbjct: 412 IFDDIRAGFNDVSKAAFV--AGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGER 466


>gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D4]
 gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides dorei 5_1_36/D4]
          Length = 484

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 156/483 (32%), Positives = 257/483 (53%), Gaps = 39/483 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I+ ++ DSR I+ G IF+A+ G + DGH +I +AI +GA  +V       ++   T+ 
Sbjct: 21  QEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            N   + V++T   +   A+  YG     +  + VTGT+GK+++A+ +  + ++ G   +
Sbjct: 75  ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G  ST+ ++  +  +    TTP PI L K L  ++ +G  +  +E SSH + Q R+ G
Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257
           +K   G FTNL RDH+DYH+T + Y  AK   F+  LPK + A+   DD      ++   
Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDS-LPKTAFALTNLDDKNGLVMTQNTK 250

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            + H    R LS  ++GK +       + +   V ++V+           G F   N L 
Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G    +G  +  VL  L  L  V GRF+ +  + +G    VDYAHT ++LE +L  I 
Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359

Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            + +G+  +I V G GG+RD+GKRP+M + A+  +D  I+T DNPR E+P++I  +++ G
Sbjct: 360 EVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I   +R EAIRTA  +   +DV++VAGKGHE    +  G K    D +++R
Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGIKHHFDDKEVLR 478

Query: 491 EIL 493
           +I 
Sbjct: 479 DIF 481


>gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
 gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
          Length = 493

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 166/502 (33%), Positives = 251/502 (50%), Gaps = 57/502 (11%)

Query: 1   MKLQDLIY---KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKLQ+L+     +  ELIN+            I  +  DSR ++ G +FV I G   DGH
Sbjct: 3   MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKKGSLFVCIKGYTVDGH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115
            +  +A+  GA AIV     ++        +  P+++V ++++ L+  A   Y +  H  
Sbjct: 54  DYAEKAVKSGATAIVAEHPLNI--------TEVPVIIVKHSQRALARIADAFYEQPTHKL 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174
           N++ +TGT+GK+S    ++Q+ +++   +  IG     ++    D + TTP  + L K  
Sbjct: 106 NLIGITGTNGKTSTTHMIEQMMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  Q V    +E SSH L   R+ G       FTNL +DH+DYH T + Y +AK  LF
Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225

Query: 235 EEL-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            +L       K   AI+ ADD  S    K        V++   + K   + K        
Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYFEKVT---AAEVMTYALERKADVMAK-------- 274

Query: 290 QVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            + I  +G  FD + P         L G+F VYN L A  + I  G+    ++  +E+L 
Sbjct: 275 NIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELE 334

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GRFE V  + +   + VDYAHT +SLE +L   + +T G+I  V GCGGDRD+ KRP
Sbjct: 335 GVKGRFELVNCD-QDFPVIVDYAHTPDSLENVLTTCKELTEGKIFCVIGCGGDRDKTKRP 393

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEM 455
            M +IA+  AD  + T DNPRSEDP  I  ++ +G+P      F+   NR +AI  AI  
Sbjct: 394 QMAQIAVKYADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFV---NRKQAIFFAIAN 450

Query: 456 LNKQDVLVVAGKGHETVHIVTN 477
             K D +++AGKGHET  I+ +
Sbjct: 451 AKKGDTVLIAGKGHETYQIIDD 472


>gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
 gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
          Length = 491

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 244/473 (51%), Gaps = 22/473 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++ D+R +Q G +F  + G   DGH F P A+A+GA A+VV     L         
Sbjct: 24  EIAALAYDNRKVQPGTLFFCVPGFTRDGHDFAPDAVARGAVALVVERPLGL--------- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L V + R  ++  A+   G     +  + VTGT+GK++ A  V+ + + +G  +  
Sbjct: 75  GVPELRVASVRAAMARAAANFNGDPTARLQTVGVTGTNGKTTTAFLVRGLLEAAGRQTGL 134

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   + +   A++ + TT   I L   L  +   G    ++E SSH L+ HR D ++  
Sbjct: 135 LGTVKAVVGGEAREVQRTTAEAIELQADLRAMLDGGDVAAAIEVSSHALELHRADAVRFA 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNA 263
           A  FTNL +DH+D+H T + YF AK RLFE        A++  DD Y + + +  RA  A
Sbjct: 195 AAIFTNLTQDHLDFHPTMEDYFLAKRRLFET---GPGVAVVNVDDPYGRRLAEELRADGA 251

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               +++ +   +   +    +        + +G       PLPG F V N L A     
Sbjct: 252 ALVTIALDHDADYRATELTTGLTGSAFTAQTPQGP-IALRTPLPGRFNVQNVLGAVAAVR 310

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G+    +   L +   VPGRFE V    +G  + VDYAHT +SL+ +L+  R +T  +
Sbjct: 311 ALGVPLEQIAAALPQAGRVPGRFEPV-DEGQGFAVLVDYAHTPDSLDNVLQAARGLTERQ 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           ++ VFGCGGDRD+ KRP+MG IA  LAD A VT DNPRSEDPE+I  +++ G    P   
Sbjct: 370 VLTVFGCGGDRDRTKRPLMGGIAARLADEAYVTSDNPRSEDPEQILRDVVEGTGTGPHVH 429

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R +AI  A+   +  DVLV+AGKGHE       GEK    D  + RE L
Sbjct: 430 VEVDRRKAIFAAVAAAHDGDVLVIAGKGHEQGQEFAGGEKLPFDDVTVAREAL 482


>gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 164/504 (32%), Positives = 265/504 (52%), Gaps = 48/504 (9%)

Query: 14  LINQL--SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           L+N+L  +I P+Q       +I  V+ DSR ++AG +F+A+ G + DGH +IP AI +GA
Sbjct: 2   LLNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            AI+       +D      +    + V ++   +   A+  YG       ++ VTGT+GK
Sbjct: 62  TAILC------EDIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           +++A+ +    +  G   +++G  ST+ ++  D  +    TTP PI L + L  ++ +G 
Sbjct: 116 TTIATLLYNTFRYFG---YKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGC 172

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ +PK +
Sbjct: 173 KYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNA 231

Query: 243 PAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVE 296
            ++   DD      ++    + +    R LS  ++G+ I  H + +    N  ++ +   
Sbjct: 232 FSLTNLDDKNGLVMTQNTRSKVYTYSLRSLS-DFKGRVIESHFEGMLLDFNNHELAVQFI 290

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK           F   N L   G  + +G     VL  L  LH V GRF+ +  + +G 
Sbjct: 291 GK-----------FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAI-RSPKGV 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I
Sbjct: 339 TAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G+     K      +R EAIRTA  +  K DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D ++++EI 
Sbjct: 459 ENYQEI-KGVKHHFDDKEVLKEIF 481


>gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 491

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 245/476 (51%), Gaps = 42/476 (8%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P  + + +++ + SD+R ++   IFVAI G   DGH FIP+AI +GA+AIVV      
Sbjct: 15  VSPKDYDDFEVSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIRKGAKAIVV------ 68

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137
           Q+ +  I+  T I+ V+NT + L++ A + YG    +  ++ VTGT+GK++V   ++ I 
Sbjct: 69  QEETDDIQGVT-IVRVNNTNRALAILADKFYGSPSSSMKVIGVTGTNGKTTVTHMIEAIF 127

Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +     +  IG     I         TTP  + L K  + +  + V   ++E SS  L Q
Sbjct: 128 RDQKDRTGLIGTMYRRIGEKTYPTANTTPDILTLQKTFAEMKKENVKAAAIEVSSIALIQ 187

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYS 253
            R+ GI +    FTN  +DH+DYH+T   Y +AK  LF +L      +  A+I  DD   
Sbjct: 188 GRVWGIDVDTAVFTNFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYGNDKTAVINIDDEMG 247

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--------- 304
           K     A +   +VL+ G +          A+     V I  +G DFD            
Sbjct: 248 KNF---AQDTATQVLTYGIKND--------AMIKASNVNIHSQGTDFDLKVFEDEYHLHV 296

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G F VYN L A G   A G+    ++E LEK   V GR + + ++  G    VDY+H
Sbjct: 297 KTVGMFNVYNLLAAFGAAYANGVSVHAIIESLEKFPGVKGRLQLISSDC-GISAIVDYSH 355

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T + L   L+ I    SG +  V GCGGDRD  KRP M +IA++ ++  I T DNPR+ED
Sbjct: 356 TPDGLLNALETINEFASGDVYCVVGCGGDRDATKRPKMAQIAVEYSNHPIFTSDNPRTED 415

Query: 425 PEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PEKI  +++ G+P   EK      +R EAI+ A+   N  D++++AGKGHE   I+
Sbjct: 416 PEKILDQMLSGVP---EKNVPVYLDRREAIQAAVNAANPGDIILIAGKGHEDYQII 468


>gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 515

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 164/467 (35%), Positives = 245/467 (52%), Gaps = 38/467 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF-SATIR 87
            ++ +SSDSR I+ G +FVA+ G + DGH F+  A+++GA A++       ++F    + 
Sbjct: 28  SLSMISSDSRDIEQGGLFVAVRGFQADGHDFVADAVSRGAAAVIC------EEFPGGDVP 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                +   + R  L+  A  LYG   E  +++ V+GT+GK++ A  +  +   +G+   
Sbjct: 82  PGVCFIKAPDARLALAEAAFALYGGASEQLDVIGVSGTNGKTTTAMLIAAMLNHNGIRCG 141

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG   T  +   D  +    TTP    L + L  +  +G   V++E SSH L   R+ G
Sbjct: 142 YIG---TGRAVIGDEEIPLERTTPEAHGLHRLLRRMVDEGCRAVAMEVSSHALMLQRVHG 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---YSKEVMK 258
           ++     FTNL  DH+D+H + +AY +AK RLF +LLP E  A+   DD    +  E + 
Sbjct: 199 VRFRVAVFTNLTVDHLDFHGSMEAYASAKQRLFRQLLP-EGRAVFNMDDPRAPFMAEGLP 257

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----------ISVEGKDFDFLFPLPG 308
            A  +GC +  V  +      + VC      +VT          +S     FD    LPG
Sbjct: 258 PASCSGCSLSGVERRAD----RSVCGEWFLAEVTGEDAQSSHLRLSFPDGMFDGELLLPG 313

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V NAL+AA  C A+G+           L  V GR E V       R  VDYAHT ++
Sbjct: 314 RFNVMNALLAAATCHAMGVSGGAAAASFPFLPPVQGRMERVDGGPGRVRAIVDYAHTPDA 373

Query: 369 LEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           L+ +L+ +  +    GR+ VVFGCGGDRD  KRP+MG+IA ++AD+ I+T DNPRSEDPE
Sbjct: 374 LQRVLQTLARLKPAGGRLAVVFGCGGDRDPSKRPVMGRIAEEIADMVILTSDNPRSEDPE 433

Query: 427 KIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +I  +I  G+   G     +R  AI TA+  L + D+L+VAGKG E+
Sbjct: 434 RILDDIEQGMSCIGHRRIADRGTAISTAVAELGELDILLVAGKGRES 480


>gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
 gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
          Length = 482

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 163/504 (32%), Positives = 265/504 (52%), Gaps = 48/504 (9%)

Query: 14  LINQL--SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           L+N+L  +I P+Q       +I  V+ DSR ++AG +F+A+ G + DGH +IP AI +GA
Sbjct: 2   LLNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            AI+       +D      +    + V ++   +   A+  YG       ++ VTGT+GK
Sbjct: 62  TAILC------EDIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           +++A+ +    +  G   +++G  ST+ ++  D  +    TTP PI L + L  ++ +G 
Sbjct: 116 TTIATLLYNTFRYFG---YKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGC 172

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ +PK +
Sbjct: 173 KYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNA 231

Query: 243 PAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVE 296
            ++   DD      ++    + +    R LS  ++G+ I  H + +    N  ++ +   
Sbjct: 232 FSLTNLDDKNGLVMTQNTRSKVYTYSLRSLS-DFKGRVIESHFEGMLLDFNNHELAVQFI 290

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK           F   N L   G  + +G     VL  L  LH V GRF+ +  + +G 
Sbjct: 291 GK-----------FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAI-RSPKGV 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I
Sbjct: 339 TAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D ++++EI 
Sbjct: 459 ENYQEI-KGVKHHFDDKEVLKEIF 481


>gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
 gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
          Length = 492

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 170/483 (35%), Positives = 247/483 (51%), Gaps = 36/483 (7%)

Query: 22  PMQWRERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           P   R  K+N   ++ DSR ++ G+IF AI G   DGH FIP+A+A+GA  IV       
Sbjct: 12  PTLERIMKLNPRGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAER---- 67

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASF 132
                 +     + VV NTR+ L+  A++ YG HP   L V G +G +        ++S 
Sbjct: 68  ---KVEVPPGVVLEVVPNTRRALAWAAAQFYG-HPSRKLHVVGVTGTNGKTTTTHLLSSL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            Q+  ++ GL    IG     +   A     TTP  + L   L+ +  +G+    +E SS
Sbjct: 124 YQEQGKKVGL----IGTLYVKLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEVSS 179

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYA 248
           HGL   R+ G+      FTNL +DH+D+H+  + YF  K RLF ELL   P +  A+I  
Sbjct: 180 HGLALERVTGVAFDVAVFTNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINR 239

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y + +       G  VL+ G +   +H           ++  S  G+  +    LPG
Sbjct: 240 DDPYGQRLTSLCR--GVEVLTYGLKEGEVHALDYELRPEGTRLLASAGGERVEVKLSLPG 297

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F VYNAL A  + +  G+   L    L ++  VPGR E +    +   + VDYAHT + 
Sbjct: 298 IFNVYNALAALAVAVGEGMPLDLAARALSRVQAVPGRCERI-DEGQDFTVLVDYAHTPDG 356

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  IL+  R I+ GR+IVVFGCGGDRD  KRP+MG+IA + AD+ +VT DNPRSEDP  I
Sbjct: 357 LLNILRTAREISRGRVIVVFGCGGDRDPSKRPVMGRIAGEYADLVVVTSDNPRSEDPVAI 416

Query: 429 RAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
              I  G+        ++   +R  AI+ A       D++++AGKGHE   I+  G+K++
Sbjct: 417 MQAIAQGLAQVAPPSRYLLIEDREAAIKEAFARARPGDIVILAGKGHENCQII--GDKRI 474

Query: 483 SVD 485
             D
Sbjct: 475 PFD 477


>gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
 gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
          Length = 495

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 250/483 (51%), Gaps = 25/483 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+ ++ E+  DSR    G +FVAI G++ DG  FI QAI  GA A++  +    Q  + +
Sbjct: 19  RDIELQEMILDSRLANTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVS 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
              N P++      K LS  A R Y    +   ++ VTGT+GK+++A  + Q  Q  G +
Sbjct: 79  FEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHT 138

Query: 144 SFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           S  +G       F Q  +   TT S I +  +L     QG    ++E SSHGL QHR++ 
Sbjct: 139 SAVMGTIGN-GLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVSSHGLVQHRVEA 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   AG FTNL RDH+DYH T + Y  AK RLF EL  +    I+  DD      +    
Sbjct: 198 LTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHK--ILNVDDEIGATWLIELS 255

Query: 262 NAGCRVLSVG----YQGKFIHLKKVCAI--HNK-QQVTISVEGKDFDFLFPLPGEFQVYN 314
                V++V     YQ    +  K  A+  H+K   +  +    +     PL G F V N
Sbjct: 256 KDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNGILSSPLIGGFNVSN 315

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+     +++G D   +L  + +L  V GR E +    +   + VDYAHT ++LE  L+
Sbjct: 316 LLLVLATLLSLGYDIGKLLATVRQLTGVCGRMEMLSAKHK-ATVIVDYAHTPDALENALQ 374

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +      G++  +FGCGGDRD+GKRP+M  IA   AD  IVTDDNPR+E+PE+I  +I  
Sbjct: 375 SAAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNPRTENPEQIMQDI-- 432

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            + GF +         R +AI+TA++   + DV+++AGKGHE   I+   +   S D +I
Sbjct: 433 -LTGFQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGTTKYHFS-DQEI 490

Query: 489 IRE 491
           +++
Sbjct: 491 VKK 493


>gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
 gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
          Length = 493

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 238/460 (51%), Gaps = 11/460 (2%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  I+ +  DSR I  G  FVAI G+  DG  FI  AI +GA A++  S        
Sbjct: 21  EFHDMAISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAINRGANAVIAQSCERHPQGV 80

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +  S  P++ +D   + LS  ASRLY      ++ VTGT+GK+++   + Q     G  
Sbjct: 81  CSTESRVPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTNGKTTITQIIAQWLNLVGKR 140

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G          Q    TT S I + + L  + SQG    ++E SSHGL Q R+  +
Sbjct: 141 AAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGADFTAMEISSHGLVQGRVKTL 200

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              AG FTNL RDH+DYH T + Y  AK  LF E   +   AII  DD    +  ++  +
Sbjct: 201 PFAAGVFTNLSRDHLDYHGTMEEYELAKRSLFTE--HQCGKAIINVDDQVGAKWAEQLPD 258

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAG 320
           A    L        +   +V   +++  ++++  G+  D  F  PL GEF   N LVA  
Sbjct: 259 AIQVSLQPLSSTNAVFASQVD--YSESGISLAFSGRFGDGQFSVPLIGEFNANNVLVAFT 316

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A+GID   ++E  ++L  V GR E    N    ++ VDYAHT ++LE  L  +R   
Sbjct: 317 TLLALGIDKQQLIETAKQLTPVIGRMELF-HNEGKAKVVVDYAHTPDALEKALMALRVHC 375

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            G++  +FGCGGDRD GKRP+M +I   LAD  ++ DDNPRSE P  I  +++ G+    
Sbjct: 376 HGKLWAIFGCGGDRDTGKRPMMAEIGERLADHVVLADDNPRSESPSAIVDDMLAGMRNPE 435

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             I + +R +A++ A+      D++++AGKGHE   ++ N
Sbjct: 436 RAIVEHDRFKALQYALANSEVHDIILLAGKGHEDYQVLAN 475


>gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 483

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 164/476 (34%), Positives = 264/476 (55%), Gaps = 32/476 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V  DSR  +  ++F+AI G K DG L++ +AI  GA AIVV     ++++       
Sbjct: 22  IGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAIAIVVDR--EIKEYPGV---- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           T +LV D  R  ++  AS  Y        ++ VTGT+GK+SV   ++ I +R    + ++
Sbjct: 76  TTVLVED-ARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D  +    TTP  + L +  S + ++GV +V +E SSH L   R++  +
Sbjct: 132 GLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALKRVNECE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+H   + Y   K +LF+  + K + ++I  DD YS  ++    ++
Sbjct: 192 FDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFK--MAKRA-SVINIDDKYSSMMI---ESS 245

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             RVL+ G +   ++  K +    +  +  + +E K  +    +PG F VYNAL A  + 
Sbjct: 246 KARVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLFSVYNALAAITVA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI    V E L ++  V GRFE V T  +   +++DYAHT + ++ +++ ++   +G
Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFEPVET-GKDFYVFIDYAHTPDGIQNMMEALKEYKAG 363

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R I++FG GGDRD+ KRP+MG++A   AD  I+T DNPRSE+P +I ++I  GI      
Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEEPREIISQIEEGIKKTDCP 423

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
           ++   NR EAIR A+    K DV+++AGKGHET  I+  G K +  D  +I++EIL
Sbjct: 424 YVVIENRKEAIRYALLNAQKDDVIILAGKGHETYQII--GNKVIPFDEREIVKEIL 477


>gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Bacteroides fragilis NCTC 9343]
          Length = 485

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/489 (32%), Positives = 260/489 (53%), Gaps = 45/489 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  DSR +++G +F+A+ G + DGH +IP A+ +GA AI+       ++  A +  
Sbjct: 22  EITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILC------EELPAELAE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               + V ++   +   A+  YG +P +   ++ VTGT+GK+++A+ +    +  G   +
Sbjct: 76  GVTYIQVADSEDAVGKAATTFYG-NPSSKLELVGVTGTNGKTTIATLLYNTFRYFG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G  ST+ ++  D  +    TTP PI L + L  ++ +G  +V +E SSH + Q R+ G
Sbjct: 132 KVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257
           ++   G FTNL RDH+DYH+T + Y  AK + F++ +PK S ++   DD      ++   
Sbjct: 192 LRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNSFSLTNLDDKNGLVMTQNTK 250

Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            + +    R LS  ++G+ +  H + +    N  ++ +   GK           F   N 
Sbjct: 251 SKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNL 298

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L   G  + +G     VL  L  LH V GRF+ +  + +G    VDYAHT ++L  +L  
Sbjct: 299 LAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYAHTPDALVNVLNA 357

Query: 376 IRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           I  +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++
Sbjct: 358 IHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDIINDML 417

Query: 434 HGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            G+    +K      +R EAIRTA  +  K DV++VAGKGHE    +  G K    D ++
Sbjct: 418 AGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQDI-KGVKHHFDDKEV 476

Query: 489 IREILGLIL 497
           ++EI  L +
Sbjct: 477 LKEIFSLTV 485


>gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 485

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 246/470 (52%), Gaps = 34/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           RK + +  DSR ++  +IFVA+ G   DGH +I  A+  GA  I+VS           ++
Sbjct: 19  RKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSR-------KVEMK 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----QR 139
                +++D  R  L   AS  Y + P+    I+ VTGT+GK+S    ++++       R
Sbjct: 72  HKVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G   ++IG       F   N  TTP  + L K       + + +V +E SSH L+  R+
Sbjct: 131 IGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRV 184

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +      FTNL +DH+DYH T + YF AK +LF +L    + ++   DD Y K +   
Sbjct: 185 DVLDFDYALFTNLTQDHLDYHVTMENYFQAKRKLFLKL-KDINNSVFNIDDKYGKRLYDE 243

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  ++S G  G  +  + +    +   + I  + K     F L G+F +YN L A 
Sbjct: 244 FIEDNPEIISYGIDGGDLEGEYL----DDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAV 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   +GI    +LE +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I
Sbjct: 300 AIARKMGISWEDILERVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNI 358

Query: 380 TSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
            +G RII +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++  G   
Sbjct: 359 RNGNRIITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKAGFTK 418

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              ++ + +R +AI+ AI M  K D++++ GKGHET HI+  G KK   D
Sbjct: 419 TDDYLFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466


>gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 488

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 163/478 (34%), Positives = 252/478 (52%), Gaps = 23/478 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E++ DSR  +AG +F+AI G++ DG  +IPQA+  GA A++  +  + Q         
Sbjct: 18  LTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQQHLQVHYEQG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P++      + LS  A   Y ++P     ++ VTGT+GK++ A  + Q  Q  G +   
Sbjct: 78  IPLIAFYRLSENLSRLADVFY-QYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTGAV 136

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +    ++   TT S + +  +L+   ++G    ++E SSHGL QHR++ +   
Sbjct: 137 MGTIGNGLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESVHFS 196

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTNL RDH+DYH T + Y  AK RLF EL  +    II ADD      +    +A  
Sbjct: 197 AAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQ--IIDADDPVGAVWLAEMPHA-- 252

Query: 266 RVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVA 318
             ++V  +  F+      LK V    N +  TI  E    + +   PL G F V N L+ 
Sbjct: 253 --VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNLLLV 310

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + +G   + ++  + KL  V GR E +    +   + VDYAHT ++LE  L+  R 
Sbjct: 311 TATLLTLGYPLSGLINSVHKLTGVCGRMEILHAPQKP-TVIVDYAHTPDALEKALQAARL 369

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              G++  +FGCGGDRD GKRP+M +IA  LAD  I TDDNPR+E+P+KI A+I++G   
Sbjct: 370 HCRGKLWCIFGCGGDRDSGKRPLMARIAEQLADHVIATDDNPRTEEPKKIMADILNGFVH 429

Query: 437 PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P  ++    R +AI TAI+   + DV+++AGKGHE   I+   +   S D ++ R  L
Sbjct: 430 PQSVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQIIGKTKYHFS-DQEVARNYL 486


>gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
 gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
          Length = 484

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 257/483 (53%), Gaps = 39/483 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I+ ++ DSR I+ G IFVA+ G + DGH +I +AI +GA  +V       ++   T+ 
Sbjct: 21  QEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            N   + V++T   +   A+  YG     +  + VTGT+GK+++A+ +  + ++ G   +
Sbjct: 75  ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G  ST+ ++  +  +    TTP PI L K L  ++ +G  +  +E SSH + Q R+ G
Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257
           +K   G FTNL RDH+DYH+T + Y  AK   F+  LPK + A+   DD      ++   
Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDG-LPKTAFALTNLDDKNGLVMTQNTK 250

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            + H    R LS  ++GK +       + +   V ++V+           G F   N L 
Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G    +G  +  VL  L  L  V GRF+ +  + +G    VDYAHT ++LE +L  I 
Sbjct: 301 VYGAACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359

Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            + +G+  +I V G GG+RD+GKRP+M + A+  +D  I+T DNPR E+P++I  +++ G
Sbjct: 360 EVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I   +R EAIRTA  +   +DV++VAGKGHE    +  G K    D +++R
Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGIKHHFDDKEVLR 478

Query: 491 EIL 493
           +I 
Sbjct: 479 DIF 481


>gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 482

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 254/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+       +D      +
Sbjct: 22  EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGATAILC------EDMPEEPVA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG       ++ VTGT+GK+++A+ +    +  G   ++
Sbjct: 76  GITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIATLLYNTFRYFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  L    TTP PI L + L  ++ +G  +V +E SSH + Q R+ G+
Sbjct: 133 VGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F++ LPK + ++   DD      ++    
Sbjct: 193 KYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKSAFSLTNLDDKNGLVMTQNTRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R L   ++G+ +  H + +    N  ++ +   GK           F   N L
Sbjct: 252 KVYTYSLRSL-CDFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ V  + +G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGVTAIVDYAHTPDALINVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+     K      +R EAIRTA  +  K DV++VAGKGHE    +  G K    D +++
Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477

Query: 490 REIL 493
           +EI 
Sbjct: 478 KEIF 481


>gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
 gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
          Length = 485

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/489 (32%), Positives = 259/489 (52%), Gaps = 45/489 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  DSR +++G +F+A+ G + DGH +IP A+ +GA AI+       ++  A +  
Sbjct: 22  EITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILC------EELPAELAE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               + V ++   +   A+  YG +P +   ++ VTGT+GK+++A+ +    +  G   +
Sbjct: 76  GVTYIQVADSEDAVGKAATTFYG-NPSSKLELVGVTGTNGKTTIATLLYNTFRYFG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G  ST+ ++  D  +    TTP PI L + L  ++ +G  +V +E SSH + Q R+ G
Sbjct: 132 KVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257
           +K   G FTNL RDH+DYH+T + Y  AK + F++ +PK S ++   DD      ++   
Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNSFSLTNLDDKNGLVMTQNTK 250

Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            + +    R LS  ++G+ +  H + +    N  ++ +   GK           F   N 
Sbjct: 251 SKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNL 298

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L   G  + +G     VL  L  LH V GRF+ +  + +G    VDYAHT ++L  +L  
Sbjct: 299 LAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYAHTPDALVNVLNA 357

Query: 376 IRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           I  +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++
Sbjct: 358 IHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDIINDML 417

Query: 434 HGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            G+    +K      +R EAIRTA  +  K D ++VAGKGHE    +  G K    D ++
Sbjct: 418 AGLDTEDKKKTLSIADRKEAIRTACMLAEKGDAILVAGKGHENYQDI-KGVKHHFDDKEV 476

Query: 489 IREILGLIL 497
           ++EI  L +
Sbjct: 477 LKEIFSLTV 485


>gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 2336]
 gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336]
          Length = 495

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 251/483 (51%), Gaps = 25/483 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+ ++ E+  DSR  + G +FVAI G++ DG  FI QAI  GA A++  +    Q  + +
Sbjct: 19  RDIELQEMILDSRLAKTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVS 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
              N P++      K LS  A R Y    +   ++ VTGT+GK+++A  + Q  Q  G +
Sbjct: 79  FEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHT 138

Query: 144 SFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           S  +G       F Q  +   TT S I +  +L     QG    ++E SSHGL QHR++ 
Sbjct: 139 SAVMGTIGN-GLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVSSHGLVQHRVEA 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   AG FTNL RDH+DYH T + Y  AK RLF EL  +    I+  DD      +    
Sbjct: 198 LTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHK--ILNVDDEIGATWLIELS 255

Query: 262 NAGCRVLSVG----YQGKFIHLKKVCAI--HNK-QQVTISVEGKDFDFLFPLPGEFQVYN 314
                V++V     YQ    +  K  A+  H+K   +  +    +     PL G F V N
Sbjct: 256 KDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNGILSSPLIGGFNVSN 315

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+     +++G D   +L  + +L  V GR E +    +   + VDYAHT ++LE  L+
Sbjct: 316 LLLVLATLLSLGYDIDKLLATVRQLTGVCGRMEMLSAKHK-ATVIVDYAHTPDALENALQ 374

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +      G++  +FGCGGDRD+GKRP+M  IA   AD  IVTDDNPR+E+PE+I  +I  
Sbjct: 375 SAAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNPRTENPEQIMQDI-- 432

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            + GF +         R +AI+TA++   + DV+++AGKGHE   I+   +   S D +I
Sbjct: 433 -LTGFQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGTTKYHFS-DQEI 490

Query: 489 IRE 491
           +++
Sbjct: 491 VKK 493


>gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 498

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 168/500 (33%), Positives = 262/500 (52%), Gaps = 47/500 (9%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E++  + +       E ++  ++ DSR    G++FVA+ G + DGH +I  A+  GA 
Sbjct: 3   FGEILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGK 126
           A+++     L D+ A  R       V ++RK L+L ++R Y  +P     ++ VTGT+GK
Sbjct: 63  AVILQKDMILPDYIAWAR-------VPDSRKALALLSARFY-NYPSRRLKMIGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A  ++ + + +G  +  IG   + I     + + TTP    L   LS +   GV  V
Sbjct: 115 TTTAHLIESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-- 243
           ++E SSH L+ HR+DG +     FTNL +DH+D+H+  + Y  AK  LF  L        
Sbjct: 175 AMEVSSHALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNG 234

Query: 244 ---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AII ADD  +  + + +   G +V++ G       +KK   I   + +T+  +G  F
Sbjct: 235 AKYAIINADDEAAARLTRLS---GGQVITYGM------VKKADII--AENITVRADGASF 283

Query: 301 DFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                         L G+F VYNAL A  + +  G    ++   LE +  VPGRFE V  
Sbjct: 284 TVASRQGKVTINLNLTGKFNVYNALAAYSVGMVSGFSPQVIKHALEGVKGVPGRFELV-D 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT + L  IL   R  T+G++I VFGCGGDRD+ KRP+MG+I+  L+D
Sbjct: 343 EGQDFAVIVDYAHTPDGLRNILNTAREFTAGKLINVFGCGGDRDRTKRPLMGEISGRLSD 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVA 465
             IVT DNPR ED ++I  +I+ GI   +E+       +R  AI+ A+      DV+++A
Sbjct: 403 FTIVTSDNPRREDADRIILDILVGISRVVERDYYTIISDRRAAIKAALAQAASGDVVIIA 462

Query: 466 GKGHETVHIVTNGEKKMSVD 485
           GKGHET  I+  G+ + + D
Sbjct: 463 GKGHETYQII--GDVRYAFD 480


>gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
 gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
          Length = 484

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 257/483 (53%), Gaps = 39/483 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I+ ++ DSR I+ G IFVA+ G + DGH +I +AI +GA  +V       ++   T+ 
Sbjct: 21  QEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            N   + V++T   +   A+  YG     +  + VTGT+GK+++A+ +  + ++ G   +
Sbjct: 75  ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G  ST+ ++  +  +    TTP PI L K L  ++ +G  +  +E SSH + Q R+ G
Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257
           +K   G FTNL RDH+DYH+T + Y  AK   F+  LPK + A+   DD      ++   
Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDG-LPKTAFALTNLDDKNGLVMTQNTK 250

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            + H    R LS  ++GK +       + +   V ++V+           G F   N L 
Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G    +G  +  VL  L  L  V GRF+ +  + +G    VDYAHT ++LE +L  I 
Sbjct: 301 VYGAACLLGKKAEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359

Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            + +G+  +I V G GG+RD+GKRP+M + A+  +D  I+T DNPR E+P++I  +++ G
Sbjct: 360 EVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I   +R EAIRTA  +   +DV++VAGKGHE    +  G K    D +++R
Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGIKHHFDDKEVLR 478

Query: 491 EIL 493
           +I 
Sbjct: 479 DIF 481


>gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
 gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
          Length = 485

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/489 (32%), Positives = 259/489 (52%), Gaps = 45/489 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  DSR +++G +F+A+ G + DGH +IP A+ +GA AI+       ++    +  
Sbjct: 22  EITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILC------EELPVELAE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               + V ++   +   A+  YG +P +   ++ VTGT+GK+++A+ +    +  G   +
Sbjct: 76  GVTYIQVADSEDAVGKAATTFYG-NPSSKLELVGVTGTNGKTTIATLLYNTFRYFG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G  ST+ ++  D  +    TTP PI L + L  ++ +G  +V +E SSH + Q R+ G
Sbjct: 132 KVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257
           +K   G FTNL RDH+DYH+T + Y  AK + F++ +PK S ++   DD      ++   
Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNSFSLTNLDDKNGLVMTQNTK 250

Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            + +    R LS  ++G+ +  H + +    N  ++ +   GK           F   N 
Sbjct: 251 SKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNL 298

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L   G  + +G     VL  L  LH V GRF+ +  + +G    VDYAHT ++L  +L  
Sbjct: 299 LAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYAHTPDALVNVLNA 357

Query: 376 IRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           I  +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++
Sbjct: 358 IHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDIINDML 417

Query: 434 HGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            G+    +K      +R EAIRTA  +  K DV++VAGKGHE    +  G K    D ++
Sbjct: 418 AGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQDI-KGVKHHFDDKEV 476

Query: 489 IREILGLIL 497
           ++EI  L +
Sbjct: 477 LKEIFSLTV 485


>gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
 gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
          Length = 488

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 251/477 (52%), Gaps = 30/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +  DSR +Q   +F+AI G+  DGH +I  A  QGA AIV       +     + + 
Sbjct: 24  INNIHFDSRKVQLNDVFIAIRGSISDGHDYIKNAENQGALAIVC------EKIPDEVING 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V++T++ L+  ++  Y    E +  + VTGT+GK+++A+ +  +  ++G   F+ 
Sbjct: 78  VTYIEVEDTKRALAYISANYYDNPSEKLKLVGVTGTNGKTTIATLLYDLFTKAG---FKC 134

Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  ST+     ++      TTP  I +   L  ++  GV    +E SSHG+DQHR   +K
Sbjct: 135 GLLSTVKVMVGNDEHTAIRTTPDSITINSYLKDMNDVGVEFCFMEVSSHGIDQHRTTALK 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL  DH+DYH+    Y + K R F+E LP  + A+   DD  + E+M +   A
Sbjct: 195 FEGGIFTNLSHDHLDYHKDFAEYRDVKKRFFDE-LPASAFALTNVDDK-NGEIMLQNTKA 252

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                ++     F   K     +N   + + V+  D +    L G F  YN L    +  
Sbjct: 253 KKHTYAL---KSFADYKAQILENNFTGLLLKVD--DQELWTKLIGNFNAYNVLAIYAMAD 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
            +G+ +  +L  + +L+ V GRF++V +        VDYAHT ++L+ +L+ I +I +  
Sbjct: 308 LLGLKTLEILRIISELNSVSGRFQYVISEKEKITAIVDYAHTPDALKNVLETINSIRTRN 367

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440
             +I V GCGGDRD  KRP MG IA  L+   + T DNPR+EDP+KI  E+  G+ P   
Sbjct: 368 EELITVVGCGGDRDTTKRPKMGHIASALSTKVVFTSDNPRTEDPDKIIEEVEGGVEPQNF 427

Query: 441 EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +K     NR +AI+TA +M  + D++++AGKGHET   V NGE+    D  I+ E L
Sbjct: 428 KKTMSVTNRKQAIKTACQMAGQNDIILIAGKGHETYQEV-NGERVDFDDLKIVNEFL 483


>gi|325829979|ref|ZP_08163437.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
 gi|325488146|gb|EGC90583.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
          Length = 500

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 252/473 (53%), Gaps = 21/473 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++N ++  S  +Q G  F  +VG   DGH F   AI +GA+ +VV     L D     
Sbjct: 21  DDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGAKVLVVERKVYLAD----- 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
            ++   +VV +TRK ++  A+  Y  HP   LA+ G +G +   +    V+ I + +G  
Sbjct: 76  ATDVTEIVVKDTRKAMAAAAANFY-DHPSKDLALVGITGTNGKTTTTYLVEHIARVAGKR 134

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     I   A+ +  TTP    L +  + +       V++E SSH LD  R    
Sbjct: 135 TGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEVSSHALDLDRTWDA 194

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                +F+NL +DH+DYH T +AYF AK RLF +  P +   +I  DD + KE+++R   
Sbjct: 195 AFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKR--VICIDDKWGKELLRRCSV 252

Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           A   V++ G+     IH   V        VT+ V G    F +PL G+F V N + A G+
Sbjct: 253 AEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVGKFNVENVMCAFGI 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTIT 380
            + +G  +  ++E LE+   +PGR E V   + GG  ++VDYAHT ++LE  L +I  +T
Sbjct: 313 GLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPDALEKALASIMALT 372

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            GR + VFGCGGDRD  KRPIMGK AL  AD A+VT DNPR+EDP+ I  +I+ G+    
Sbjct: 373 PGRTVCVFGCGGDRDASKRPIMGKAAL-AADHAVVTSDNPRTEDPQAIIEDIVSGMSSGA 431

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             F  + +R  AI  AI      D +++AGKGHE   +V  G++ +S D  I+
Sbjct: 432 GRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLV--GDQVLSFDDRIV 482


>gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
 gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
          Length = 483

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 255/485 (52%), Gaps = 39/485 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+    P  I       +   + +I  V+ DSR I  G +F+A+ G + DGH FI
Sbjct: 1   MKLKELLKGIHPTTI-------IGEEDIEIAAVNIDSRRIGKGHLFIAMRGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117
           P+AI QGA AI+  +    Q      ++    +VV +T       A+  YG +P     +
Sbjct: 54  PKAIEQGASAILCETIPEQQ------KAGVTYIVVSSTEDAAGKVATIFYG-NPSMRLKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK++VA+ +  + ++ G   ++ G  ST+ ++ ++  +    TTP PI L + 
Sbjct: 107 VGVTGTNGKTTVATLLYNMFRKFG---YKCGLLSTVCNYIEEEAVPADHTTPDPIALNQL 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  ++  G  +V +E SSH + Q R+ G+    G FTNL RDH+DYH+T   Y NAK   
Sbjct: 164 LHRMAESGCEYVFMECSSHAIAQKRISGLHFSGGIFTNLTRDHLDYHKTFDNYRNAKKAF 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+  LPK S AI  ADD   K  M    N    + +   +       K+   H  + + +
Sbjct: 224 FDS-LPKSSFAITNADD---KNGMYMVQNCKATIKTYSLRNMADFKAKILECHF-EGMYL 278

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++G++    F   G+F V N L   G  + +G     +L  +  L  V GR E +  + 
Sbjct: 279 EIDGREVGVQF--IGKFNVSNLLAVYGTAMMLGKQPEDILLAMSTLKSVSGRLEPI-RSQ 335

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G    VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRP+M + A   +D
Sbjct: 336 EGVTAVVDYAHTPDALANVLNAIHEVLDGKGKVITVCGAGGNRDKGKRPLMAQEAAKQSD 395

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR EDP+ I  +++ G+     K      +R EAIRTA+ M  + DV+++AG
Sbjct: 396 RVIITSDNPRDEDPQSIIDDMLAGLNMQQRKKTLSIVDRKEAIRTAVMMAERGDVILIAG 455

Query: 467 KGHET 471
           KGHET
Sbjct: 456 KGHET 460


>gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 2; AltName:
           Full=Meso-A2pm-adding enzyme 2; AltName:
           Full=Meso-diaminopimelate-adding enzyme 2; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           2
 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum ATCC 824]
 gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum EA 2018]
          Length = 483

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 260/482 (53%), Gaps = 38/482 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S +S+ ++  ++FV+I G + DGH FI +A   GA A+++      +DF  +I  N
Sbjct: 23  IEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNGAAAVIID-----EDFHDSIE-N 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           T ++ V N++  L+   +  Y + P    N++ VTGT+GK++V  +++ + +  G S+  
Sbjct: 77  TTLVKVKNSKVALACLCNLFY-EEPSRELNLVGVTGTNGKTTVIHYIRDMLEAFGNSTGT 135

Query: 147 IGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           IG   T+    +D  +       TTP  + L + L     +G  +  +E +S  L +HR+
Sbjct: 136 IG---TLGYELKDKEINVEKINPTTPEALELNQILRDFIDKGAKNAVMEVTSSALMKHRV 192

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D      G FTNL +DH+D H T + Y N K++LF+ + P     +I  DD  + E++++
Sbjct: 193 DYCSFKVGVFTNLSQDHLDEHGTIENYKNEKIKLFK-MCP---VGVINLDDNIAGEIIEK 248

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALV 317
                C   + G       L     ++    V+ +V  +G        +PGEF VYN L 
Sbjct: 249 GT---CEFFTYGVLTN-ADLTASDMVYKPNSVSFNVHYKGISSKVKVNVPGEFTVYNVLA 304

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A G  + +GID   +L+ +  +  V GR E +  N     I +DYAHT +SLE +L   R
Sbjct: 305 AIGSLLCLGIDFESILKLVSSIKPVLGRLETI-NNPLNKNIIIDYAHTPDSLEKLLIMAR 363

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
            +T+GRII VFGCGGDRD+ KR +MG     L+D  I+T DNPR E PE I  +I  G+ 
Sbjct: 364 EMTNGRIITVFGCGGDRDKSKRGLMGMAVGILSDYCIITSDNPRHEKPEDIIRDIERGMQ 423

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC-DIIREI 492
                + +  +R  AI+  IE+L ++D+L++AGKGHE   I+  G+ K+  D  +++ E+
Sbjct: 424 TINSSYEKITDRRCAIKRGIEILKEEDILIIAGKGHEDYQII--GDNKVHFDDREVVNEL 481

Query: 493 LG 494
           LG
Sbjct: 482 LG 483


>gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 519

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 246/486 (50%), Gaps = 31/486 (6%)

Query: 10  DFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           ++ +L+ +  I  ++  +R   I +V+ DSR +  G +FVAI G   DGH F+  AI QG
Sbjct: 27  NYRDLLTEEEILEVRNGDRTEAITDVAYDSRRVGPGAMFVAIFGFATDGHRFVEAAIEQG 86

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTS 124
           A  IV  +        A    +   L V + R+ L   ASR +G HP     +  +TGT+
Sbjct: 87  AAVIVHQADL------ARYHDDVVYLKVTDCRRLLGHIASRFFG-HPSEKITVTGITGTN 139

Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGV 182
           GK+S   F+  I + +G    ++G   + I     DN+  T S     +A ++   + G 
Sbjct: 140 GKTSSTYFLTGILRAAGKKCARMGTIDNQIGDAVLDNKGRTTSESRDTQAFIAEAVAAGC 199

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           + + +EASS  LD  RL  +      FTNL +DH+DYH+T +AYF AK RLF++    E 
Sbjct: 200 SDLVMEASSQALDLDRLTDVHFDYALFTNLTQDHLDYHKTFEAYFEAKARLFDQT---EK 256

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKD 299
            AII  DD + ++++ R      ++  + Y         L  V         T+    + 
Sbjct: 257 AAIINRDDPWGRKLINRIRERHPKLKIITYGEDPAADYRLSAVDCTTGGSTFTLQAGDEK 316

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                 + G F VYNA+   G  IA    GID A +   L    VV GR E + TN    
Sbjct: 317 ETIFLDVLGRFMVYNAV---GTIIAAREQGIDWAAIKAALADAPVVEGRMERIKTNLDFD 373

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I VDYAHT ++LE +LK ++ +  GR+I VFGCGGDRD GKRP+MG IA   AD +++T
Sbjct: 374 -IVVDYAHTPDALENLLKTVKELARGRVIAVFGCGGDRDHGKRPLMGAIAAKEADFSVLT 432

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETV 472
            DN RSEDPE I  +I   +    ++  RI    EA   A+    K DV++ AGKGHE  
Sbjct: 433 SDNSRSEDPEAILDDIEAAVRPITDQYTRIADRREATVYALTHARKDDVVIFAGKGHEKT 492

Query: 473 HIVTNG 478
               NG
Sbjct: 493 ETSRNG 498


>gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
          Length = 504

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 167/475 (35%), Positives = 248/475 (52%), Gaps = 42/475 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V  DSR + AG +FVA+ G   DG+ FI  A+ QGA AI+  SA +     A +R  
Sbjct: 23  VRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGAAAIITDSAETF----AALRER 78

Query: 90  TP---ILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143
            P   + +V++ R+ L+  ++ ++G+ PE  L   AVTGT+GK++ A  ++Q+ +  G  
Sbjct: 79  QPELAVALVEHGRRALAEVSAAVFGR-PEQTLKLSAVTGTNGKTTTAFLLEQMLRSVGRK 137

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G   T I    +++  TTP    +    +     G T V +E SSH L+Q R+ G+
Sbjct: 138 SVLMGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVVMEMSSHALEQERVWGL 197

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRA 260
            +    FTNL +DH+DYH T +AYF AK R+F  +  LP    A+I  D  Y  E+    
Sbjct: 198 PVDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGVGALPPRV-AVINLDSEYGDEMCHEF 256

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311
             A      +G  G +            + V++++    FDF+ P         L G   
Sbjct: 257 RGATLMTYGMGEFGNY----------RAENVSLALGDTRFDFVTPEGRIAMHSPLSGRVN 306

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLE 370
           V N L A+   +A G+    V    E LH VPGRF+ V G+ + G  + VDYAHT ++L 
Sbjct: 307 VENLLAASCAALARGLTLEQVAHAAEMLHQVPGRFQVVPGSKAAGFFVVVDYAHTDDALR 366

Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++   R       GR I +FGCGGDRD+ KRP MG+ A + +D+ +VT DNPRSE+P  
Sbjct: 367 NLIALARESVVGHGGRAITLFGCGGDRDKTKRPKMGRAAGEDSDLVVVTSDNPRSEEPMT 426

Query: 428 IRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           I  E + G+      FI + +R  AI  AI      D++++AGKGHE V I  +G
Sbjct: 427 IINEALLGVRETQTTFIVEEDRRAAIEVAIRSAKPGDIVLLAGKGHEKVQIFADG 481


>gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
          Length = 490

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 252/491 (51%), Gaps = 52/491 (10%)

Query: 13  ELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           +L+  L   P+Q  + +  I  +  DSR ++ G +FV I G   DGH F  +A   GA A
Sbjct: 5   KLLTYLMTEPVQNDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAA 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           IV      +         + P+++V  +++ LS+ +   YG+  + +  + +TGT+GK+S
Sbjct: 65  IVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTS 115

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
               V +I +++G  +  IG T  I     +F   N  TTP  + L K    ++ + V  
Sbjct: 116 TTHMVDEIFKKAGRQTGLIG-TMYIKIGDETFPVKN--TTPESVTLQKTFKKMNDEHVET 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
             +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF +L      E
Sbjct: 173 AIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHE 232

Query: 242 SP--AIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  A++ ADD  S   E +  AH     +L+ G +     + K        Q+ IS +G
Sbjct: 233 KPKRAVLNADDKASAYFERVTAAH-----ILTYGIENDADVMAK--------QIEISAQG 279

Query: 298 KDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             F+ + P         L G F VYN L AA   IA G+    +   LE+L  V GRFE 
Sbjct: 280 TSFELVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFEL 339

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  N +   + VDYAHT +SLE +L   + +T G++ VV GCGGDRD+ KRP M +IA+ 
Sbjct: 340 VNHN-QPFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVR 398

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +AD  I T DNPRSEDP  I  ++  G+ G  +    NR +AI  AI    K DV+++AG
Sbjct: 399 IADEPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAG 458

Query: 467 KGHETVHIVTN 477
           KGHET   + N
Sbjct: 459 KGHETYQQIGN 469


>gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens LL3]
          Length = 490

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 252/491 (51%), Gaps = 52/491 (10%)

Query: 13  ELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           +L+  L   P+Q  + +  I  +  DSR ++ G +FV I G   DGH F  +A   GA A
Sbjct: 5   KLLTYLMTEPVQNDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAA 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           IV      +         + P+++V  +++ LS+ +   YG+  + +  + +TGT+GK+S
Sbjct: 65  IVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTS 115

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
               V +I +++G  +  IG T  I     +F   N  TTP  + L K    ++ + V  
Sbjct: 116 TTHMVDEIFKKAGRQTGLIG-TMYIKIGDETFPVKN--TTPESVTLQKTFKKMNDEHVDT 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
             +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF +L      E
Sbjct: 173 AIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHE 232

Query: 242 SP--AIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  A++ ADD  S   E +  AH     +L+ G +     + K        Q+ IS +G
Sbjct: 233 KPKRAVLNADDKASAYFERVTAAH-----ILTYGIENDADVMAK--------QIEISAQG 279

Query: 298 KDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             F+ + P         L G F VYN L AA   IA G+    +   LE+L  V GRFE 
Sbjct: 280 TSFELVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFEL 339

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  N +   + VDYAHT +SLE +L   + +T G++ VV GCGGDRD+ KRP M +IA+ 
Sbjct: 340 VNHN-QPFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVR 398

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +AD  I T DNPRSEDP  I  ++  G+ G  +    NR +AI  AI    K DV+++AG
Sbjct: 399 IADEPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAG 458

Query: 467 KGHETVHIVTN 477
           KGHET   + N
Sbjct: 459 KGHETYQQIGN 469


>gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 496

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 168/470 (35%), Positives = 236/470 (50%), Gaps = 24/470 (5%)

Query: 25  WRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-- 80
           W E   ++ +++ DSR +QAG +FVA+ G++ DG  FIP AI QGA AI+++ A   Q  
Sbjct: 14  WVEELTELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGA-AIILAEADEDQPE 72

Query: 81  --------DFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                    F+    +   ++ V N  K LS  A   Y    H   +  +TGT+GK++ A
Sbjct: 73  AELDSKFAKFNLDRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTA 132

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + Q     G  S  +G     +    Q+   TT S I + + L+     G    ++E 
Sbjct: 133 QLLAQWHNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEV 192

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL Q R + +      FTNL RDH+DYH T + Y  AK RLF EL  K    +I AD
Sbjct: 193 SSHGLAQFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQ--VINAD 250

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLP 307
           D   +E + +  NA        +      +K        Q  +I+ +    + +    L 
Sbjct: 251 DEIGREWLTQLPNAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRLI 310

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A    +A+G D   +++    L  V GR E + T      + VDYAHT +
Sbjct: 311 GAFNVNNLLTAFAGLLALGFDIQDLIKTSPNLVGVAGRMECI-TAPNKPMVIVDYAHTPD 369

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+  R    G +  +FGCGGDRD GKRP+M  IA  L D  I TDDNPR+ED +K
Sbjct: 370 ALEKALQAARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQK 429

Query: 428 IRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I A+I+ G   P  I   NR EAI+TAIE     DV+++AGKGHE   I+
Sbjct: 430 IMADIVKGFSKPQQIIH-NREEAIKTAIEQAKATDVILIAGKGHENYQII 478


>gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 489

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 251/477 (52%), Gaps = 31/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR   A   FVAI G + DGH FI  A+  G  A++       ++    +   
Sbjct: 24  IESIRFDSRETGASDAFVAIRGTEADGHRFIDGAVKNGVRAVIC------EELPQDLADG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V +T+  L++ AS  YG    N+  + VTGT+GK++V++ + Q+ +++G   +++
Sbjct: 78  VTYVEVADTQLALAVMASNYYGNPSANLRLVGVTGTNGKTTVSTLLYQLFKKAG---YKV 134

Query: 148 GPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  STI     D     RLTTP  + + K LS ++  GV    +E SSHG+ Q R +G+ 
Sbjct: 135 GLISTIKIMVDDQEFPTRLTTPDSLTINKYLSRMNEAGVEFCFMEVSSHGIAQRRTEGLV 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL  DH+DYH+    Y + K +LF+  LPK + A+  ADD   K  +    N 
Sbjct: 195 FEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDG-LPKSAFALTNADD---KNGLFMIQNT 250

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R L+   +       ++       Q+   ++ +D +    L G+F  YN L       
Sbjct: 251 RARKLTYALRSYADFRAQILEQQLDGQL---LKIQDNEVWTKLIGQFNAYNLLAIYATAS 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+    +L+ L  L  V GRF++  +  R   I VDYAHT ++L+ +L  I  + +G 
Sbjct: 308 LLGLGQLEILQLLSGLQTVDGRFQYFVSKQRITAI-VDYAHTPDALKNVLVTINALRTGN 366

Query: 384 --IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440
             +I V GCGG+RD+ KRP+MG IA D+++ AI T DNPR E P  I AE+  G+ P  +
Sbjct: 367 ESVITVVGCGGERDKSKRPVMGHIASDMSETAIFTSDNPRREPPRDIIAEMEAGVEPQNV 426

Query: 441 EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            K     +R +AIRTA +M    D++++AGKGHET   +  G ++   D  ++ E+L
Sbjct: 427 RKVLVIEDREQAIRTACKMAGGGDIILIAGKGHETYQEIA-GVRRDFDDYKLVSEVL 482


>gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parasuis SH0165]
 gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           SH0165]
          Length = 496

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 174/496 (35%), Positives = 253/496 (51%), Gaps = 23/496 (4%)

Query: 18  LSIFPM--QWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           LS FP    W E +++N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA  ++  
Sbjct: 5   LSFFPELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAE 64

Query: 75  SAYSLQ--DFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +   +Q   F+    ++T  +L V N  K LS  A   YG   E   ++ +TGT+GK++ 
Sbjct: 65  ADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A    Q     G  S  +G     +    Q+   TT S + +   L+     G    ++E
Sbjct: 125 AQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAME 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R + +      FTNL RDH+DYH T + Y  AK RLF EL  K+   +I A
Sbjct: 185 VSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ--VINA 242

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFP 305
           DD   ++ + +   A        +Q +     K  A+    Q  TI  E    + +    
Sbjct: 243 DDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSR 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDY 362
           L G F V N L A    +A+G D   ++E    L+ V GR E + +         + VDY
Sbjct: 303 LIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDY 362

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L   R    G +  VFGCGGDRD GKRP+M +IA  LAD  IVTDDNPR+
Sbjct: 363 AHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRT 422

Query: 423 EDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP+ I  +++ G   P  ++  + R  AI  AI     +DV+++AGKGHE   I+  G 
Sbjct: 423 EDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQII--GT 480

Query: 480 KKMSV-DCDIIREILG 494
           KK    D +  R+ LG
Sbjct: 481 KKYHFSDQEWARKFLG 496


>gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
 gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
          Length = 482

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 254/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+       +D      +
Sbjct: 22  EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGATAILC------EDMPEEPVA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG       ++ VTGT+GK+++A+ +    +  G   ++
Sbjct: 76  GITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIATLLYNTFRYFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L + L  ++ +G  +V +E SSH + Q R+ G+
Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F++ LPK + ++   DD      ++    
Sbjct: 193 KYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKSAFSLTNLDDKNGLVMTQNTRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R L   ++G+ +  H + +    N  ++ +   GK           F   N L
Sbjct: 252 KVYTYSLRSL-CDFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ V  + +G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGVTAIVDYAHTPDALINVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+     K      +R EAIRTA  +  K DV++VAGKGHE    +  G K    D +++
Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477

Query: 490 REIL 493
           +EI 
Sbjct: 478 KEIF 481


>gi|257791846|ref|YP_003182452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
 gi|257475743|gb|ACV56063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
          Length = 500

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 168/473 (35%), Positives = 252/473 (53%), Gaps = 21/473 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++N ++  S  +Q G  F  +VG   DGH F   AI +GA+ +VV     L D     
Sbjct: 21  DDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGAKVLVVERKVYLAD----- 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
            ++   +VV +TRK ++  A+  Y  HP   +A+ G +G +   +    V+ I + +G  
Sbjct: 76  ATDVTEIVVKDTRKAMAAAAANFY-DHPSKDIALVGITGTNGKTTTTYLVEHIARVAGKR 134

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     I   A+ +  TTP    L +  + +       V++E SSH LD  R    
Sbjct: 135 TGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEVSSHALDLDRTWDA 194

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                +F+NL +DH+DYH T +AYF AK RLF +  P +   +I  DD + KE+++R   
Sbjct: 195 AFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKR--VICIDDKWGKELLRRCSV 252

Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           A   V++ G+     IH   V        VT+ V G    F +PL G+F V N + A G+
Sbjct: 253 AEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVGKFNVENVMCAFGI 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTIT 380
            + +G  +  ++E LE+   +PGR E V   + GG  ++VDYAHT ++LE  L +I  +T
Sbjct: 313 GLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPDALEKALASIMALT 372

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            GR + VFGCGGDRD  KRPIMGK AL  AD A+VT DNPR+EDP+ I  +I+ G+    
Sbjct: 373 PGRTVCVFGCGGDRDASKRPIMGKAAL-AADHAVVTSDNPRTEDPQAIIEDIVSGMSSGA 431

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             F  + +R  AI  AI      D +++AGKGHE   +V  G++ +S D  I+
Sbjct: 432 GRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLV--GDQVLSFDDRIV 482


>gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
 gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
          Length = 494

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 174/485 (35%), Positives = 251/485 (51%), Gaps = 23/485 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG+K DG  +IPQAIAQG  A+V  +  +  D + T 
Sbjct: 19  ERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVAQADEATPDGTLTE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ ++N  + LS  A R Y + P   L + G +G +   +  Q + Q S      
Sbjct: 79  MHGVPVIYLENLNQRLSALAGRFY-RQPSASLQLIGVTGTNGKTTTTQLLAQWSQ----A 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + + + LS L  QG    ++E SSHGL QHR
Sbjct: 134 LGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +   A  FTNL RDH+DYH     Y  AK RLF E   +    II ADD   +  ++
Sbjct: 194 VEALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLFAE--HQVGQKIINADDEVGRRWLQ 251

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGK--DFDFLFPLPGEFQVYNA 315
           R  +A    ++        H  K   I ++    T+  +      +    L G F V N 
Sbjct: 252 RLPDAVAVSVAGEIDAGRAHWLKATHIDYHDSGFTVQFDSSWGAGEINSRLMGAFNVSNL 311

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +++G     +++    L  V GR E    + R   + VDYAHT ++LE  L  
Sbjct: 312 LLALATLLSLGYSLEQLVKTGSALQPVCGRMEVFLASGRP-TVVVDYAHTPDALEKALAA 370

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSEDP+ I A+I+ G
Sbjct: 371 ARLHCRGVLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDPQAIVADILSG 430

Query: 436 I--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G ++    R EA+ +A+      DV++VAGKGHE   +V N E+    D   +  +
Sbjct: 431 LLDAGRVQAIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGN-ERLDYSDRITVARL 489

Query: 493 LGLIL 497
           LG+I+
Sbjct: 490 LGVIV 494


>gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15]
          Length = 485

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 164/480 (34%), Positives = 247/480 (51%), Gaps = 28/480 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ + +DSR + +G  F+A+ G +     ++ +AIA GA  I++ +    Q    T    
Sbjct: 15  IHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLEAQ---QAGECTEHHG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             I+ V   R  +   A R + +HP     ++ VTGT+GK+SV  +V Q+ + +G     
Sbjct: 72  ALIVPVAGLRSLVGRIADRFF-EHPSQRLRLIGVTGTNGKTSVCQYVAQLLKETGTPCGI 130

Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +    Q    TTP  + + + LS +  Q      +E SSH LDQ R+D + + 
Sbjct: 131 LGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGRVDNLSMT 190

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKRAHNA 263
              FTNL RDH+DYH + +AY  AK +LF  EEL      ++I  DD + +++ ++    
Sbjct: 191 GAVFTNLTRDHLDYHGSMEAYGAAKAQLFQREEL----HFSVINFDDPFGRQLFEQLDGK 246

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             RV    ++ +  + L++        +  +  E   F    PL G F   N L A    
Sbjct: 247 CDRVRYSLHEAQTELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAAMATV 306

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           + +G+    V + + +L   PGR E FVG N  G R+ VDYAHT ++L   L  +R   +
Sbjct: 307 LTLGVPIERVQQAVGRLTPPPGRLERFVGAN--GVRVVVDYAHTPDALANALTALRPHVT 364

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           G ++ VFGCGGDRD GKRP M + A  LAD  +VTDDNPRSEDPE I AE  H + GF +
Sbjct: 365 GELVCVFGCGGDRDAGKRPEMAREAERLADRVVVTDDNPRSEDPETI-AE--HILAGFTD 421

Query: 442 KG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                   +R EAIR+ I      DV+++AGKGHE    +  G+K    D + +R +L L
Sbjct: 422 AARVSVIHDRAEAIRSTIRSATPNDVVLIAGKGHEAYQEIA-GQKYPFSDAEQVRHVLKL 480


>gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 507

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 240/457 (52%), Gaps = 31/457 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ DSR ++ G++F A+ G K DGH FIP+A+A+GA AIV  +A   +D S T   
Sbjct: 23  EVAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPKALAEGAVAIVAETAPP-EDCSVTW-- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVA-------SFVQQICQ 138
               L V N R  L+  A+  Y  HP   +AV   TGT+GK++ A       +   + C 
Sbjct: 80  ----LHVKNARVALAEMAA-AYKGHPARSMAVGGVTGTNGKTTTAFLLHHLLNHAHRRCG 134

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G   + +G     ++       TTP  + L   LS +  +G   V++E SSH +DQHR
Sbjct: 135 LLGTVVYDVGGDLKPATH------TTPESLELQGLLSEMRDRGCVAVAMEVSSHAIDQHR 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVM 257
             G+   A  FTNL +DH+DYH T + YF AK +LF       S   +I  DD + + ++
Sbjct: 189 THGVPFAAAVFTNLSQDHLDYHGTMEEYFKAKSKLFSSTAASRSGKLVINVDDIWGRRLV 248

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNA 315
             AH     +++ G  G     + V   ++    +  +E K    L  +P  G+F VYN+
Sbjct: 249 D-AHKEHPGLVTYGL-GVAADYRAVNPRYDLTGTSFELEHKGRSLLVRIPQIGQFNVYNS 306

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A      +G +    ++ ++    +PGR E V  ++    ++VDYAHT + L   L  
Sbjct: 307 LAALAAAHGMGCNLRDTVKAMQSSPQIPGRMERVTPDNHSFHVFVDYAHTPDGLVNALST 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R +   RII VFGCGGDRD+ KRP+M +   + +DI+I+T DNPR+EDP+ I  +   G
Sbjct: 367 ARALRPERIITVFGCGGDRDRLKRPLMARAVEEHSDISILTSDNPRTEDPQAIMDDARKG 426

Query: 436 IPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                     +R EAI TAI+   + D++V+AGKGHE
Sbjct: 427 FTRSAHALIADRKEAIHTAIKGAREGDIVVIAGKGHE 463


>gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 523

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 164/500 (32%), Positives = 253/500 (50%), Gaps = 63/500 (12%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L+ K+F +L+           + +I+ ++ DSR +  G +F A+ G K DG+ F+ 
Sbjct: 31  KLSSLLGKEFEKLLKGQP-------DPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVD 83

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NIL 118
           +AI++GA A++ S A   +       +    L VDN R  L+   SR +  HP+   +++
Sbjct: 84  EAISRGAVAVISSQARRFRS------AKVAYLTVDNPRLVLAA-VSRAFYDHPDKDLSLV 136

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------TISSFAQDNRLTTPSPIYLAK 172
            +TGT+GK++VA  V+QI    G     +G         T+ SF      TTP    L  
Sbjct: 137 GITGTNGKTTVAYLVKQILANLGQRYGCLGTVGYDLVRRTVPSFR-----TTPESHDLCG 191

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            LS +         +E SSHG+DQ R+ G+    G+F NL RDH+DYHQ  ++Y+  K R
Sbjct: 192 LLSQMRDFECRGAVMEVSSHGIDQFRVSGLGFEVGAFLNLTRDHLDYHQDMESYYAVKRR 251

Query: 233 LFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            F  E  P    A++  DD Y K ++         +L+ G        +   A     ++
Sbjct: 252 FFNGESGPLPKVAVVNIDDPYGKRLVSEIPEQ-VAILTFG--------ETEGAAFRASEI 302

Query: 292 TISVEGKDFDFLFPLP---------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +S EG +F F  PL          G++ V N L A  +C  +G++    +E L+    +
Sbjct: 303 ELSSEGSEFRFTTPLGDFAVKTSLVGDYNVSNTLAALTICSGLGLNIENCIEDLDSFPGI 362

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR + V    +   + VDYAHT ++L+  L  ++ +T G++ VVFGCGG+RD+GKRP M
Sbjct: 363 PGRMQKV-EAGQAATVLVDYAHTEDALQNALSMLQGVTVGKLRVVFGCGGNRDRGKRPAM 421

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEI---------IHGIPGFIEKGNRIEAIRTAI 453
            K+A  LAD A  T DNPR+E  E I A++         +H +P      +R  AI  A+
Sbjct: 422 TKVANTLADEAWATSDNPRNEQVEDIFADMKEGLVDPERVHFVP------DRRRAIELAL 475

Query: 454 EMLNKQDVLVVAGKGHETVH 473
           E  +  D L++AGKGHE+  
Sbjct: 476 EASHAGDCLLIAGKGHESFQ 495


>gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
 gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
          Length = 494

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 167/477 (35%), Positives = 251/477 (52%), Gaps = 22/477 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ + +DSR ++AG  FVA+ G +     +I QAI+ GA  I++ SA   + +       
Sbjct: 24  IHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISAGATVILLESAQPDECYE---HEG 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             I+ V   R  L   A R + +HP     ++ VTGT+GK+SV+ ++  + Q +G     
Sbjct: 81  VLIVPVTALRAHLGKIADRFF-EHPSQRLRLIGVTGTNGKTSVSHYIATLLQETGTPCGV 139

Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     +    Q+   TTP  + + + LS + +QG    ++E SSH L+Q R+D + + 
Sbjct: 140 IGTLGYGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAAAMEVSSHALEQGRVDNLTMT 199

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKRAHNA 263
              FTNL RDH+DYH +  AY  AK RLF  EEL      A+I  DD + +++ ++    
Sbjct: 200 GAVFTNLTRDHLDYHGSMDAYGAAKARLFHREEL----HFAVINFDDPFGRQLYEKLDGK 255

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             RV    ++ +  + L +     +    ++      F+    + G F V N L A    
Sbjct: 256 CDRVRYSLHEAQTELWLTEFAPSIDGFSASVDGLWGRFNVSARVLGSFNVSNILAAMASV 315

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           +++G+    V + +E+L   PGR E F G+N    R+ VDYAHT ++L   L  +R    
Sbjct: 316 LSLGVPVERVQQAVERLSPPPGRLEPFAGSNDV--RVVVDYAHTPDALNSALAALRPHVG 373

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439
           GR+  VFGCGGDRD GKRP M + A   AD+ IVTDDNPRSEDP+ I ++I+ G   P  
Sbjct: 374 GRLFCVFGCGGDRDTGKRPEMAREAERGADVVIVTDDNPRSEDPDAITSDIVAGFEHPEQ 433

Query: 440 IEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           I    +R EAIR AI      D+++VAGKGHE    V  G++    D + +R  L L
Sbjct: 434 IAVIHDRAEAIRQAIHSAVAGDIVLVAGKGHEAWQEVA-GQRFPFSDAEQVRHALSL 489


>gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 489

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 153/458 (33%), Positives = 242/458 (52%), Gaps = 18/458 (3%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +FVA+ G++ D   F+PQAI+ GA A+++ +    +  S   ++N P++  
Sbjct: 24  DSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILETDLENEHLSIQWQNNVPVIRY 83

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
            +    LS  A + YG   E   ++ VTGT+GK++V+  + Q     G  +  +G     
Sbjct: 84  YHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQLLAQWATLLGHKAAVMGTIGNG 143

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +    ++ + TT S + +   L+    +G    S+E SSHGL Q+R++ +K  +  FTNL
Sbjct: 144 LLDQVKEAKNTTGSAVEVQANLADFVEKGADFASIEVSSHGLAQYRVEALKFKSAIFTNL 203

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GCRVLS 269
            RDH+DYH+T + Y  AK R F +L  +    I+ ADD      +    N+    C    
Sbjct: 204 SRDHLDYHETMEKYAEAKKRFFVDLASELQ--ILNADDPIGAAWLNELPNSIAVSCHPNF 261

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                ++++  ++   H    +       +     PL G F V N L+A  + +A+G   
Sbjct: 262 HATSKQWLYATEIRFTHEGAVIEFVSSWGNGTLHSPLIGAFNVSNLLLATAVLLALGYSF 321

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             ++  + +L  V GR E +    + G+  + VDYAHT ++LE  L + R    G++  +
Sbjct: 322 DDLIRTVSQLKGVNGRMELI---KKAGKPTVIVDYAHTPDALEKALNSARQHCKGKLWCI 378

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---N 444
           FGCGGDRD GKRP+M K A   AD+ IVT DNPR+EDP KI A+I+ G     + G   +
Sbjct: 379 FGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEADILTGFSRMEDVGVIPD 438

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           R EAI+  IE   + DV+V+AGKGHE   I+  G+K +
Sbjct: 439 REEAIKFTIENAVEDDVIVIAGKGHENYQII--GDKTL 474


>gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 493

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 163/493 (33%), Positives = 249/493 (50%), Gaps = 30/493 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P L+ QL +         I  V +DSR +  G +F+A  G   DG  FIP A+ +GA A+
Sbjct: 13  PALLQQLGL--------PIKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEKGAAAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +   A     F+       P L V N R+   + A+ + G    +  ++ +TGT+GK+S+
Sbjct: 65  LWDEA---DGFAWKAEWQAPNLAVPNLRERAGIVAAHVLGLPSRDLTVVGITGTNGKTSI 121

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           + ++ Q     G  +  IG           +   TTP P+ + + L+    QG   V++E
Sbjct: 122 SHWLAQAFSLLGQKAALIGTVGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAHVVTME 181

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGLDQ R++G++     FTNL RDH+DYH + +AY  +K +LF         A+I A
Sbjct: 182 VSSHGLDQFRVNGVEFATAVFTNLTRDHLDYHGSMEAYGESKKKLF--FWEGLKHAVINA 239

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDA+ +++         RV++ G +   +    + A     Q+T++      D    L G
Sbjct: 240 DDAFGRQLAAGIDPKQTRVVTYGLEQGDVRPLALAATLEGLQLTVATPWGTVDVRTGLVG 299

Query: 309 EFQVYNALVA-AGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            F   N L   A LC+  G+   D+A V+  ++      GR + VG  +    + +DYAH
Sbjct: 300 RFNAANLLACLATLCVN-GVSLQDAAAVMARIQPAR---GRMQSVG-GAHEPLVVIDYAH 354

Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++LE  L  +  I    GR+  VFGCGGDRD GKRP+MG IA   AD+A++T DNPRS
Sbjct: 355 TPDALEKALATLSEIRPAGGRLFCVFGCGGDRDPGKRPMMGAIAEKHADVAVLTSDNPRS 414

Query: 423 EDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           EDP+ I  +++ G+       + +R  AI  A+      DV++VAGKGHE    +  G K
Sbjct: 415 EDPQAIIRDVLAGMDAARAHVEADREAAIHWAVAQARVGDVVLVAGKGHEEYQDIA-GVK 473

Query: 481 KMSVDCDIIREIL 493
           +   D  +  E L
Sbjct: 474 RPFSDFRVAEEAL 486


>gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-003]
          Length = 491

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 242/484 (50%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGAPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA S   M++A  A      +  +  F              + I+  G  FD  
Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             +V
Sbjct: 464 YQVV 467


>gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
 gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
          Length = 496

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 173/496 (34%), Positives = 253/496 (51%), Gaps = 23/496 (4%)

Query: 18  LSIFPM--QWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           LS FP    W E +++N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA  ++  
Sbjct: 5   LSFFPELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAE 64

Query: 75  SAYSLQ--DFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +   +Q   F+    ++T  +L V N  K LS  A   YG   E   ++ +TGT+GK++ 
Sbjct: 65  ADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A    Q     G  S  +G     +    Q+   TT S + +   L+     G    ++E
Sbjct: 125 AQLFSQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAME 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R + +      FTNL RDH+DYH T + Y  AK RLF EL  K+   +I A
Sbjct: 185 VSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ--VINA 242

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFP 305
           DD   ++ + +   A        +Q +     K  A+    Q  TI  E    + +    
Sbjct: 243 DDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSR 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDY 362
           L G F V N L A    +A+G D   ++E    L+ V GR E + +         + VDY
Sbjct: 303 LIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDY 362

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L   R    G +  VFGCGGDRD GKRP+M +IA  LAD  I+TDDNPR+
Sbjct: 363 AHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIITDDNPRT 422

Query: 423 EDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP+ I  +++ G   P  ++  + R  AI  AI     +DV+++AGKGHE   I+  G 
Sbjct: 423 EDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQII--GT 480

Query: 480 KKMSV-DCDIIREILG 494
           KK    D +  R+ LG
Sbjct: 481 KKYHFSDQEWARKFLG 496


>gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus weihenstephanensis KBAB4]
 gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           weihenstephanensis KBAB4]
          Length = 491

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 255/477 (53%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+   E  +I  + +DSR ++ G +F+ + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y NAK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQLGNSYHHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+ +DD  ++E M+   +    V++ G      I  + +         T+    +  +  
Sbjct: 237 ILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP+ I  ++++ + G  +    +R EAIR+AI  +  +D++++AGKGHET  I+
Sbjct: 410 RSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETYQII 466


>gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 487

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 165/468 (35%), Positives = 241/468 (51%), Gaps = 25/468 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G   DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  S    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGSSVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNMVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDLLGQHCGIVGTLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   I       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD 
Sbjct: 179 HGLDQGRATAIAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFA--WPNLNCRVINLDDE 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +++    H +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRKLATLKHESRLITYSQLDSAAYLYCRDARFDDDGVRATLVTPQGEHF-LRSALLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G  S+   + VDYAHT ++
Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGASKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPR+E P +I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRNEPPSQI 412

Query: 429 RAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I    PGF+          R +AI   I   +  DV+V+AGKGHE
Sbjct: 413 FDDI---RPGFVAADKVRFVEGRGQAIAELIASASADDVVVLAGKGHE 457


>gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 496

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 168/482 (34%), Positives = 248/482 (51%), Gaps = 55/482 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  +  DSR  + G +F  IVG   D H FIP     GA A++   A      S  +
Sbjct: 22  QTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAGARAVLTERA------SVDV 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143
            +   +L V N  K L       Y  +P  ++    +TGT+GK++ +  V+ I + +G  
Sbjct: 76  PAGVAVLYVLNLEKALDTIVPFFY-DYPARVMRVVGITGTNGKTTTSYLVRAILRHAG-- 132

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             ++G   TI +  +D  L    TTP  I L + L+ + ++G+  V +E SSH L   R+
Sbjct: 133 -HRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDTVVMEVSSHALALGRV 191

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKE 255
            GI+     FTNL +DH+D+H+T + Y  AK  LFE +      +   A++ ADDA S+ 
Sbjct: 192 AGIEFDTAVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKEGKTAVLNADDAASET 251

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF------LFPL--- 306
           +  RA+   C +++ G      H   + A    Q V ++ +G +         LF L   
Sbjct: 252 M--RAYTR-CPIITYGVD----HPADLTA----QDVQLACDGMELTLMHGGKRLFHLHTG 300

Query: 307 -PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDY 362
             G F V+N L A G  +A  + +  +   L     VPGRFE V    R G+   + VDY
Sbjct: 301 ITGLFNVHNVLAAVGASLAEQVAATDIAAALTAFTGVPGRFELV----REGQDFAVIVDY 356

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + +E +L+  R +T G II VFGCGGDRD+ KRPIMG+I  ++ADIAI+T DNPR+
Sbjct: 357 AHTPDGMENVLRTARAVTKGHIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPRT 416

Query: 423 EDPEKIRAEIIHGI-PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP  I  E+  G+ P   +K      +R  AI  AI      D +V+ GKGHET  I+ 
Sbjct: 417 EDPTAIVDEVERGVLPVIGDKPYEKIVDRRTAIFHAIGRAQAGDTVVILGKGHETYQILK 476

Query: 477 NG 478
           +G
Sbjct: 477 DG 478


>gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 482

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 253/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+       +D      +
Sbjct: 22  EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGATAILC------EDMPEEPVA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG       ++ VTGT+GK+++A+ +    +  G   ++
Sbjct: 76  GITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIATLLYNTFRYFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L + L  ++ +G  +V +E SSH + Q R+ G+
Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F++ LPK + ++   DD      ++    
Sbjct: 193 KYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKSAFSLTNLDDKNGLVMTQNTRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R L   ++G+ +  H + +    N  ++ +   GK           F   N L
Sbjct: 252 KVYTYSLRSL-CDFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ V  +  G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPLGVTAIVDYAHTPDALINVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+        I   +R EAIRTA  +  K DV++VAGKGHE    +  G K    D +++
Sbjct: 419 GLDAEDMKKTISIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477

Query: 490 REIL 493
           +EI 
Sbjct: 478 KEIF 481


>gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
 gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
          Length = 496

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 171/482 (35%), Positives = 244/482 (50%), Gaps = 22/482 (4%)

Query: 18  LSIFPM--QWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           LS FP    W E K +N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA+ ++  
Sbjct: 5   LSFFPALESWAELKTLNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAE 64

Query: 75  SAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +   +Q      +   S   +L V N  K LS  A   YG   E   ++ +TGT+GK++ 
Sbjct: 65  ADDDVQAVRLAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A    Q     G  S  +G     +    Q+   TT S + + + L+     G    ++E
Sbjct: 125 AQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAME 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R + +      FTNL RDH+DYH T + Y  AK RLF EL  K+   +I A
Sbjct: 185 VSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ--VINA 242

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFP 305
           DD   +E + +   A        +Q +     K  A+    Q  TI  E    + +    
Sbjct: 243 DDEIGREWLAKLPEAVAVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSR 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVDY 362
           L G F V N L A    +A+  D   ++E    L+ V GR E + +         + VDY
Sbjct: 303 LIGAFNVSNLLTAFAGLLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDY 362

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L   R    G +  VFGCGGDRD GKRP+M +IA  LAD  IVTDDNPR+
Sbjct: 363 AHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRT 422

Query: 423 EDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP+ I  +I+ G   P  ++  + R  AI  AI     +DV+++AGKGHE   I+  G 
Sbjct: 423 EDPDVIFNDIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQII--GT 480

Query: 480 KK 481
           KK
Sbjct: 481 KK 482


>gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes EGD-e]
 gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-561]
 gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e]
          Length = 491

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 242/484 (50%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA S   M++A  A      +  +  F              + I+  G  FD  
Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             +V
Sbjct: 464 YQVV 467


>gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 483

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 169/477 (35%), Positives = 258/477 (54%), Gaps = 32/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V+ DSR I+ G +FVAI G + DGH +I +AI  GA A++   A           S+
Sbjct: 23  ISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVAVLCEKA------PKEPLSD 76

Query: 90  TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +VV +T   +   A+R YG   KH + ++ VTGT+GK+++A+ +  + ++ G    +
Sbjct: 77  ITYIVVTSTEDAVGKVATRFYGDPSKHLK-LIGVTGTNGKTTIATLLYNMFRKLG---HR 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ ++ +D ++    TTP PI L + L+ +  Q   +V +E SSH + Q R+ G+
Sbjct: 133 CGLLSTVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHCEYVFMECSSHAIAQKRIGGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G FTNL RDH+DYH+T + Y NAK   F+  LPK + AI  ADD  +  VM +   
Sbjct: 193 NFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDH-LPKSAFAITNADDK-NGMVMVQNTK 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  +  SV     F      C     Q + + ++G++    F   G+F V N L      
Sbjct: 251 ATVKTYSVRTAADFKARIIECHF---QGMYLEIDGQEVGVQF--IGKFNVSNLLAVYATA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381
             +G     +L  +  LH V GR + + +  +G    VDYAHT ++L+ +L  I  +   
Sbjct: 306 RMLGKQREEILIAMSTLHSVNGRMDTLHS-PQGFTAVVDYAHTPDALKNVLLAIHEVDGK 364

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           G +I V G GG+RD+GKRP+M K A+ L+D  I+T DNPR E+P+ I  +++ G+     
Sbjct: 365 GHVITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEEPQDIINDMLAGLDAQDM 424

Query: 442 KG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           K      +R EAIRTA  + +K DV++VAGKGHET   V  G K    D +++ EI 
Sbjct: 425 KKVLSIVDRREAIRTACMLADKNDVVLVAGKGHETYQEV-KGVKHHFDDKEVLAEIF 480


>gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
 gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
          Length = 484

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 256/483 (53%), Gaps = 39/483 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I+ ++ DSR I+   IF+A+ G + DGH +I +AI +GA  +V       ++   T+ 
Sbjct: 21  QEISGINMDSRLIEPDHIFIAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            N   + V++T   +   A+  YG     +  + VTGT+GK+++A+ +  + ++ G   +
Sbjct: 75  ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G  ST+ ++  +  +    TTP PI L K L  ++ +G  +  +E SSH + Q R+ G
Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257
           +K   G FTNL RDH+DYH+T + Y  AK   F+  LPK + A+   DD      ++   
Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDS-LPKTAFALTNLDDKNGLVMTQNTK 250

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            + H    R LS  ++GK +       + +   V ++V+           G F   N L 
Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G    +G  +  VL  L  L  V GRF+ +  + +G    VDYAHT ++LE +L  I 
Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359

Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            + +G+  +I V G GG+RD+GKRP+M + A+  +D  I+T DNPR E+P++I  +++ G
Sbjct: 360 EVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I   +R EAIRTA  +   +DV++VAGKGHE    +  G K    D +++R
Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGIKHHFDDKEVLR 478

Query: 491 EIL 493
           +I 
Sbjct: 479 DIF 481


>gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 487

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 247/472 (52%), Gaps = 24/472 (5%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           IF     +  I E++ DSR+++AG +F+A+ G + DG   I  A+ +GA A+    AY +
Sbjct: 8   IFAHAGHDLLIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAV----AYEV 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
           Q  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V Q  
Sbjct: 64  QGATVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQAL 123

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G        A ++ L TTP+PI +   L+ L   G   V++E SSHGLDQ
Sbjct: 124 DLLGQHCGIVGTLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  +       TNL RDH+DYH T QAY  AK +LF          +I  DD + +++
Sbjct: 184 GRVTALAFDVAVLTNLSRDHLDYHGTMQAYGEAKAKLFA--WNDLKCRVINLDDEFGRQL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 +     S+   G ++++++        + T+     +      L G F + N L
Sbjct: 242 AAEKRESRLITYSLEDAGAYLYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVL 301

Query: 317 VAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            A G  +  G+D AL  +L+ L KL    GR + +G  ++   + VDYAHT ++LE +L 
Sbjct: 302 AAIGALL--GLDYALDEILKVLPKLEGPAGRMQRLGGGTQP-LVVVDYAHTPDALEKVLT 358

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    G+++ +FGCGGDRD+GKRP+M ++   LAD  +VTDDNPR+EDP++I  +I  
Sbjct: 359 ALRPHAKGKLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPQRIFDDI-- 416

Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
              GF+   N      R +AI   I   +  DV+V+AGKGHE    + NGE+
Sbjct: 417 -RAGFMAVDNVTFVAGRGQAIAQLIASASADDVIVLAGKGHEDYQEI-NGER 466


>gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes Finland 1988]
 gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes J0161]
 gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
 gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900]
 gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900]
 gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
          Length = 491

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 242/484 (50%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA S   M++A  A      +  +  F              + I+  G  FD  
Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             +V
Sbjct: 464 YQVV 467


>gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
 gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
          Length = 487

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 250/476 (52%), Gaps = 41/476 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++   +FVAI G   DGH FI +AI  GA  IV  +          + +    + V
Sbjct: 30  DSRKVKLDDVFVAIKGTLTDGHKFIEKAIDSGAVCIVCET------MPEQLVNGVTYVEV 83

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           D+  K L++ AS  Y    +N+  + +TGT+GK++++S + Q+ +++G   F++G  STI
Sbjct: 84  DSGNKALAIMASNYYDNPSKNLKLVGITGTNGKTTISSLLYQLFKKAG---FKVGLISTI 140

Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                D       TTP  + + + L  ++ +GV    +E SSHG+ Q R +G+      F
Sbjct: 141 KIMVDDKEYATSHTTPDAMTINEHLDLMNEEGVEFCFMEVSSHGIHQKRTEGLVFEGAIF 200

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL  DH+DYH+T   Y + K  LF++ LPK + A+   DD   K  +    N   R   
Sbjct: 201 TNLTHDHLDYHKTFAEYRDTKKSLFDK-LPKNAFALTNVDD---KNGLVMLQNTAAR--- 253

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIA 324
                KF +  K  A +  Q +    +G+     D +    L G F  YN L        
Sbjct: 254 -----KFTYALKSYADYRAQILENQFDGQLLKVDDDELWTKLIGHFNAYNVLAIYATADL 308

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-- 382
           +G++    L  L +L  V GRF++  +  +   I VDYAHT ++L+ +L+ I T+ +G  
Sbjct: 309 LGLEKLETLRLLSELDNVDGRFQYYISKEKITAI-VDYAHTPDALKNVLETIGTLRTGNE 367

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIE 441
            +I V GCGGDRD+ KRP+MG IA  +++  I T DNPR+E P  I  E+  G+ P  ++
Sbjct: 368 NVITVVGCGGDRDKSKRPVMGNIASQMSNKTIFTSDNPRTESPSVIIEEMEAGVEPQNVK 427

Query: 442 K----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           K     NR +AI+TA ++    D+++VAGKGHET    TNG++    D  II ++L
Sbjct: 428 KILSIENREQAIKTACQLATANDIILVAGKGHETYQ-ETNGKRIDFDDFKIITDVL 482


>gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 513

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 158/483 (32%), Positives = 260/483 (53%), Gaps = 16/483 (3%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++ +E  + ++S DSR + AG +F+A+  ++ +    + QA+ +GA A+++ +   L   
Sbjct: 23  VELQEYMLTDISMDSRRVTAGGLFLALAKDEAERQKHLHQALDKGAFAVLIDADKPLTQT 82

Query: 83  SATIRSNTPILV--VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
              + +   +    V N  +     A+R Y +  ++  ++AVTGT+GK+SV+ F+ Q+ +
Sbjct: 83  ETAMLNEAVVSAYPVKNLSQQAGSIAARFYQQPSQHMTVIAVTGTNGKTSVSQFIAQVLE 142

Query: 139 RSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G     IG       S  +   +TTP P+ + + L+    +G  +V +EASSH L+Q 
Sbjct: 143 ADGKPCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAGFELEGCEYVVLEASSHALEQG 202

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RL+ + +     TNL RDH+DYH T   Y  AK RLFE  +   S A+I A D++ + +M
Sbjct: 203 RLNSVDINVAVLTNLSRDHLDYHHTMADYAKAKQRLFE--MGSVSRAVINACDSFGRTLM 260

Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             A  +  ++L+     +  +    +    +  Q  +++ G+      P+ G F V NAL
Sbjct: 261 N-ALRSDIQLLTYSSSDQADVSASAIQCHRDGMQFDLAIHGQQQKTTLPVLGRFNVDNAL 319

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G+ ++IG   +   + L +   V GR E  G + +   + +DYAHT ++LE  L+ +
Sbjct: 320 ATLGVLLSIGYQPSQARQALSQCRAVAGRMEAYGVDGQ-PMLVIDYAHTPDALEQALRTL 378

Query: 377 R--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           R      G++  VFGCGGDRD+GKRP+MGKIA   AD  I+TDDNPR+ED + I  +I+ 
Sbjct: 379 RGHLNQQGKLWCVFGCGGDRDKGKRPLMGKIAEIEADEIIITDDNPRTEDHQAIAEDILA 438

Query: 435 GI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G   P  I  + +R  AI  AI      D+++VAGKGHE    + + +   S D  II+E
Sbjct: 439 GCQQPHAIRVELDRKVAISYAISHAAPNDIVLVAGKGHEAYQEIDHIKFPFS-DTVIIKE 497

Query: 492 ILG 494
           +LG
Sbjct: 498 MLG 500


>gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
 gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
          Length = 487

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 171/478 (35%), Positives = 249/478 (52%), Gaps = 36/478 (7%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           IF    R+  I E++ DSR+++AG +F+A+ G K DG   I  A+ +GA A+    AY +
Sbjct: 8   IFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAV----AYEV 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
              +    ++ P++ V    K LS  A R YG+     N++ VTGT+GK+SV   V Q  
Sbjct: 64  DGATVLPITDVPLIPVKGLAKQLSDIAGRFYGEPSRHLNLVGVTGTNGKTSVTQLVAQAL 123

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G   T      Q    TTP+PI +   L+ L   G   V++E SSHGLDQ
Sbjct: 124 DLLGQHCGIVGTLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSK 254
            R+  +       TNL RDH+DYH T +AY  AK +LF   +L  +    ++  DD + +
Sbjct: 184 GRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAWNDLKCR----VVNLDDEFGR 239

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQV 312
            +   A ++  R++S   Q    +L    A  N + V  T+     +      L G F +
Sbjct: 240 HLA--AQDSESRLISYSLQDSSAYLYCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSN 367
            N L A G  +  G+D AL  +L  L KL    GR + +G    GG    + VDYAHT +
Sbjct: 298 SNVLAAIGALL--GLDYALDEILNVLPKLEGPAGRMQRLG----GGEQPLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R    G+++ +FGCGGDRD+GKRP+M +I   LAD  +VTDDNPR+EDP +
Sbjct: 352 ALEKVLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRTEDPGQ 411

Query: 428 IRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           I  +I  G        F+    R  AI   I   +  DV+V+AGKGHE    + NGE+
Sbjct: 412 IFDDIRAGFKDASKAAFV--AGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGER 466


>gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae Cit 7]
          Length = 487

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 169/478 (35%), Positives = 244/478 (51%), Gaps = 24/478 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+AI G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLADLKKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DD 
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDT 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELTGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD A VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGAWVTDDNPRSESPASI 412

Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             +I  G        FIE   R +AI   I   N  DV+V+AGKGHE    + NG+++
Sbjct: 413 FDDIRPGFAAVDKVRFIE--GRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQ 467


>gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 489

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 155/479 (32%), Positives = 256/479 (53%), Gaps = 30/479 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR ++ G ++VAI G + DGH FI +A+++GA  +V     SL D    +  +
Sbjct: 17  IRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVD----VPPD 72

Query: 90  TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P + V + R+  S  ++R+YG   +H   ++ VTGT+GK++   ++  + + +G+   +
Sbjct: 73  VPYVRVTSARRAASALSNRVYGFPSRH-LTVVGVTGTNGKTTSVHWLTHVLRFAGM---R 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIY------LAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +G  S++  F +    T P+ +       L +AL  +   G TH  +E SSHG+ QHR  
Sbjct: 129 VGMLSSV--FNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTS 186

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +      FTNL R+H+D+H + + Y  AK RLF  L  ++  AI+  DD Y+ +VM  A
Sbjct: 187 DVDFDLAIFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYA-DVM--A 243

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAA 319
            N    +++ G +   +  + V     + +V+I +  G+  + +   PG + +YN L   
Sbjct: 244 ENCVAPIVTYGVRSGDVRGRVVETDGWRTRVSIRLPNGEKLEGVLHHPGMYNLYNLLAVV 303

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                +G+ +  +   +  L  +PGR   +     G  + VDYAHT ++L  IL   R  
Sbjct: 304 AAAYVLGVSADDIAGVIPTLPTIPGRMHVI-RPEHGPTVIVDYAHTPDALRQILSTARQW 362

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           TSGR+ +VFG  G+RD+GKRP MG IA  +AD  ++T D+  SEDPE+I  EI+ G    
Sbjct: 363 TSGRVWLVFGGRGERDRGKRPEMGAIAASMADHVLITTDSSYSEDPERIANEILAGAQRV 422

Query: 440 IEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                    +R +AI  A+   N +DV+++ G+GHE+  +V  G +    D D++RE L
Sbjct: 423 HRARCDVVLDRAQAIERAVIEANDEDVILITGRGHESFQVV-GGLRLEQTDADMVREAL 480


>gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
 gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
          Length = 488

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 164/475 (34%), Positives = 247/475 (52%), Gaps = 47/475 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I+ V  DSR ++ G +F+A+ G   DG  FI QA+A GA AIV     +   F   +
Sbjct: 19  ETMISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVAEPPVA--GFVEAL 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143
           +   P++ +   ++     ASR + K P    +++ VTGT+GK++ +  V Q+ +  G S
Sbjct: 77  Q--VPLVEMPELQQESGFIASRFH-KEPSVSLHMIGVTGTNGKTTTSRLVAQLIRLQGKS 133

Query: 144 SFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
              IG    S     AQ    TTP  + L + L+    QGV   S+E SSH + Q R++G
Sbjct: 134 CGVIGTLGASLNEDVAQGGN-TTPDAVSLQQQLADWRDQGVYAASMEVSSHAMVQGRVNG 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL  DH+DYH + +AY  AK+ LF     K   A++  DD +   V     
Sbjct: 193 VGFETAVFTNLSHDHLDYHGSMEAYGRAKLALFANEGLKH--ALVNLDDEFGARV----- 245

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLFP 305
              C V+  G Q        +    +  Q  + VE  DF                +F+ P
Sbjct: 246 ---CDVVEPGVQ-------LITYSVSNPQADVFVEQADFSAGRVTGVLRTPWGTGEFVSP 295

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG+F + N   A       G   A VL+++ +L  VPGR + + +N+ G ++ +DYAHT
Sbjct: 296 LPGDFNLANLAAAVSAVTLAGEPLAEVLKNVSRLRPVPGRMQSL-SNTLGLQVIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE +L  +R    G+++VVFGCGGDRD+ KR +MG++A  +AD  +VT DNPR EDP
Sbjct: 355 PDALEQVLTALRLHVDGQLVVVFGCGGDRDREKRQVMGRVACAIADKVLVTSDNPRGEDP 414

Query: 426 EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
             I A+I  G  G ++ + +R  AI+ A+      D +V+AGKGHE   +V +GE
Sbjct: 415 AAILADIEVGCSGQYLLEVDRSTAIKRAVNEAGAGDCVVIAGKGHEDYQVV-DGE 468


>gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
 gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
          Length = 483

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 254/477 (53%), Gaps = 44/477 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E +   +  DSR I+ G IFVA+ G   DGH +I QA+  GA+ I+VS           
Sbjct: 18  KEEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKK--------- 68

Query: 86  IRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           I +  P+  + + + R+ L + AS  Y   P+  L + G +G +   +    I   S L 
Sbjct: 69  IEAVFPVKYIWIKDLRRKLGVLASNFYN-WPQKKLKIIGITGTNGKTTTTYLI--ESILG 125

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           S +     T+     D  +    TTP  + + K       +G+ ++ +E SSH L   R+
Sbjct: 126 SDKTARIGTVEYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEVSSHALALGRV 185

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVM 257
           D ++     FTNL  DH+D+H+T + YF AK +LF  ++ K  E   +I  DD Y K + 
Sbjct: 186 DMLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFT-MMKKGCEKNCVINIDDLYGKRLS 244

Query: 258 KR-------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                     HN G RV     +GK +         + Q+V I+++         + G +
Sbjct: 245 SEFGGISYGMHNEG-RV-----RGKILEFH-----GDGQEVEINIDNFSTKIKLAILGRY 293

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            VYN L A  + + +GI+  ++L+ +++L   PGR+E V    +   + VDY+HT ++LE
Sbjct: 294 NVYNVLGALSIALLLGIERDIILDKIKELKGAPGRYELVNC-GQDFTVIVDYSHTGDALE 352

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            ILK+I  +  G+II VFGCGGDRD  KR +MG+IA  L+DIAIVT DNPR+EDP KI  
Sbjct: 353 NILKSINELKKGKIITVFGCGGDRDPNKRSVMGEIAERLSDIAIVTSDNPRTEDPHKIVE 412

Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +++ G+ G   I + +R  AI  A+++   +D++++AGKGHET  I+  G KK+  D
Sbjct: 413 QVLEGMKGKNHIVEEDRDIAISKAVKLAEAKDIILIAGKGHETYQIL--GRKKIHFD 467


>gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 10403S]
          Length = 491

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 242/484 (50%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA S   M++A  A      +  +  F              + I+  G  FD  
Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAKKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             ++
Sbjct: 464 YQVI 467


>gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
 gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
          Length = 491

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 157/484 (32%), Positives = 238/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESP 243
            SSH L Q R+ G       F NL +DH+DYH T   Y NAK  LF +L           
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA S   M+ A  A      +  Q  F              + I+  G  FD  
Sbjct: 236 AVLNADDAESVR-MQTATAAHVITFGIKQQADF----------KASNIQITSHGSTFDLT 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     +  LE +  V GRFE V    +
Sbjct: 285 TPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNA-GQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 344 AFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYASNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             ++
Sbjct: 464 YQLI 467


>gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 494

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 242/465 (52%), Gaps = 27/465 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I ++++DSR ++AG +F+A+ G   DGH ++ +AI  GA A++VS           +  
Sbjct: 23  EILDITADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAVAVLVSK-------PVEVSG 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V++TR  +       +  +P N + + G +G +   +    I         ++G
Sbjct: 76  DICVITVEDTRTAMMACVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILKAQGHKVG 134

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              T+     D       TTP  + L   L  +  +GVTH  +E SSH L   R+ G++ 
Sbjct: 135 VIGTVHIMIGDATYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY 194

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESP----AIIYADDAYSKEVMKR 259
               FTNL +DH+D+H+T + Y  AK +LFE++  P ++     AII  DDAY   V+++
Sbjct: 195 DTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGKGAIINIDDAYGHRVVEK 254

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              A     S+   G  ++   V       + T+S +G D+       G F VYN L A 
Sbjct: 255 T-KAPIITYSIDGNGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 312

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G C+  GI    + + L+    VPGRFE +    +   + VDYAHT + LE IL+  + I
Sbjct: 313 GACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAI 371

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DNPR+EDP +I  ++  G+   
Sbjct: 372 QENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVEAGVKEG 431

Query: 440 IEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + +G       +R EAI+ AI+     D++++AGKGHE   I+ +
Sbjct: 432 LREGSYYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDYQILKD 476


>gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 493

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 236/459 (51%), Gaps = 18/459 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+ E+  DSR  + G +FVA+ G++ DG  +I QAI +GA A++  +  + Q        
Sbjct: 18  KLTEMILDSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLSEADNADQHLQIEWHQ 77

Query: 89  NTPILVVDNTRKFLSLFASR--LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P++      + LS  A    LY      ++ VTGT+GK++++  + Q  +  G +S  
Sbjct: 78  DVPVIQFYQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQLLAQWTKLLGHTSAV 137

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +    ++   TT S + +  +L+    QG   V++E SSHGL QHR++ +   
Sbjct: 138 MGTIGNGLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVSSHGLVQHRVEALDFD 197

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263
              FTNL RDH+DYH T + Y  AK RLF EL PK    II ADD    E +    +A  
Sbjct: 198 VAIFTNLSRDHLDYHLTMENYAAAKKRLFTELKPKHQ--IINADDPVGVEWLAELGSAVA 255

Query: 264 -GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             CR      Q K++   K+   +    +       + +    L GEF V N L+     
Sbjct: 256 VSCREDFHPTQKKWLKATKITFNNKGAHIQFESSWGNGELHSGLIGEFNVSNLLLVFATL 315

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +++  D   +L     L  V GR E + T S      VDYAHT ++LE  L+  R    G
Sbjct: 316 LSLDYDFDELLRTASSLTGVCGRMEML-TQSNQPTAIVDYAHTPDALEKALQAARLHCQG 374

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           ++  VFGCGGDRD GKRP+M  IA  LAD  IVTDDNPR+E  EKI  +I   + GF ++
Sbjct: 375 QLWCVFGCGGDRDTGKRPLMAHIAERLADKVIVTDDNPRTEAAEKIMQDI---LLGFEDQ 431

Query: 443 G------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                  +R +AI  AIE  + +D +++AGKGHE   I+
Sbjct: 432 SAVKILHDREQAIAFAIEQADPEDTILIAGKGHEDYQII 470


>gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
 gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
          Length = 482

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 157/484 (32%), Positives = 253/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+       +D      +
Sbjct: 22  EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGATAILC------EDMPEEPVA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG       ++ VTGT+GK+++A+ +    +      ++
Sbjct: 76  GITYIQVKDSEDAVGKIATTFYGNPTSKMELVGVTGTNGKTTIATLLYNTFR---YFRYK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L + L  ++ +G  +V +E SSH + Q R+ G+
Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F++ LPK + ++   DD      ++    
Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKSAFSLTNLDDKNGLVMTQNTRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R L   ++G+ +  H + +    N  ++ +   GK           F   N L
Sbjct: 252 KVYTYSLRSL-CDFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ V  + +G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGVTAIVDYAHTPDALINVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+        +   +R EAIRTA  +  K DV++VAGKGHE    +  G K    D +++
Sbjct: 419 GLDAEDMKKTVSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477

Query: 490 REIL 493
           +EI 
Sbjct: 478 KEIF 481


>gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
 gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
          Length = 483

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 164/478 (34%), Positives = 257/478 (53%), Gaps = 31/478 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I+ G +FVA+ G + DGH FI +AI  GA +++       +D    ++ 
Sbjct: 22  EITGVNIDSRRIKTGHLFVAMKGTQVDGHQFIGKAIELGAISVLC------EDLPKVLQE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V++T   +   A+  YG   H   ++ VTGT+GK+++A+ +  + ++ G    +
Sbjct: 76  GITYVQVESTEDAVGKVATLFYGDPSHKLKLVGVTGTNGKTTIATLLYNMFRKFG---HK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L + L+ +   G  +  +E SSH + Q R+ G+
Sbjct: 133 VGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G FTNL RDH+DYH+T + Y NAK   F+  LPK++ AI  ADD  +  +M +   
Sbjct: 193 KFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDS-LPKDAFAITNADDK-NGMIMVQNTK 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  +  S+     F    ++   H  + + + ++G++    F   G+F V N L   G  
Sbjct: 251 ATVKTYSIRTLADF--RARILECHF-EGMYLEIDGREVGVQF--IGKFNVSNLLAVYGAA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +G     VL  L  LH V GR E + +   G    VDYAHT ++L  +L  I  +  G
Sbjct: 306 IMLGKKPEDVLLVLSTLHSVNGRLEPIHS-PEGFTAIVDYAHTPDALANVLNAIHEVLDG 364

Query: 383 R--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
           +  +I V G GG+RD+GKRP+M + A+  +D  I+T DNPR E+P+ I  +++ G+    
Sbjct: 365 KGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVIITSDNPRFEEPQDIINDMLAGLNEQQ 424

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               I   +R EAIRTA  M  K DV++VAGKGHET   +  G K    D +++ EI 
Sbjct: 425 MRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHETYQEI-KGVKHHFDDKEVLHEIF 481


>gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
 gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
          Length = 494

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 241/465 (51%), Gaps = 27/465 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +V++DSR ++AG +F+A+ G   DGH ++ +A+  GA A++VS           + S
Sbjct: 23  EILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAVESGAVAVLVSK-------PVEVSS 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V++TR  +       +  +P N + + G +G +   +    I         ++G
Sbjct: 76  DVCVITVEDTRAAMMSCVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILKAQGHKVG 134

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              T+     D       TTP  + L   L  +  +GVTH  +E SSH L   R+ G++ 
Sbjct: 135 VIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY 194

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKR 259
               FTNL +DH+D+H+T + Y  AK +LFE++     +     A+I  DDAY   V+++
Sbjct: 195 DTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIKSGKGAVINIDDAYGHRVVEK 254

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              A     S+   G  ++   V       + T+S +G D+       G F VYN L A 
Sbjct: 255 T-TAPIITYSIDGSGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 312

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G C+  GI    + + L+    VPGRFE +    +   + VDYAHT + LE IL+  + I
Sbjct: 313 GACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAI 371

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DNPR+EDP +I  ++  G+   
Sbjct: 372 QENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPIQIVKDVEVGVKDG 431

Query: 440 IEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + +G       +R EAI+ AI+     D++++AGKGHE   I+ +
Sbjct: 432 LREGTHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDYQILKD 476


>gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51]
 gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 496

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 236/453 (52%), Gaps = 30/453 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +Q G ++  + G   DGH F  QAIAQGA A++V     L         + P L V
Sbjct: 37  DSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAAALLVERILPL---------DIPQLQV 87

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
              R+ +   A+ LY  HP     ++ VTGT+GK+++   V+ I    G     IG   +
Sbjct: 88  KKVREVMGNLAANLY-DHPAAKLEVVGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGA 146

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            I+        TTP  I L K L  +  +GV    +E SSH L   R+ G +  AG F+N
Sbjct: 147 RIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSN 206

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLS 269
           L +DH+DYH+T + Y  AK +LF  L   + P   ++  DD  ++ +++ +      V++
Sbjct: 207 LTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNGDDPAAETLIRLS---AAPVVT 263

Query: 270 VGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G     +  +   +    +  + T+  +G +    +  PG F VYNAL A    +  G 
Sbjct: 264 YGVNADLLDYRAEDILLTADGVKFTVRFKGGESQVEYSTPGMFSVYNALAAFAWGVESGR 323

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRI 384
               V E L  +  VPGRFE V    R G+   I VDYAHT + LE + +  +  T GR+
Sbjct: 324 SPGQVREALAAVQGVPGRFESV----RMGQPFQIIVDYAHTPDGLENVCRTAQEFTQGRL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442
           I VFGCGGDRD+GKRP MG IA +L+D  IVT DNPR+EDP +I  +I+ GI G  +   
Sbjct: 380 ITVFGCGGDRDKGKRPQMGAIAEELSDHVIVTSDNPRTEDPRQIIRDILEGIEGIDYTAN 439

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            NR EAI  A  +  + D +++AGKGHE   I+
Sbjct: 440 VNRREAIECACLLAKEGDTVLIAGKGHEDYQII 472


>gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
 gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
          Length = 484

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 167/479 (34%), Positives = 253/479 (52%), Gaps = 32/479 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G  FVA+ G + DGH FIP+AI  GA+AI+       +D        
Sbjct: 23  ITGVNIDSRKISNGHAFVAMKGTQVDGHQFIPKAIELGAKAILC------EDMPEDRTDG 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + V +T + +   A+  YG +P     ++ VTGT+GK+++A+ +  + ++ G    +
Sbjct: 77  VTYVQVASTAEAVGKLATAFYG-YPSKKLKLVGVTGTNGKTTIATLLYNMFRKMG---HR 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ ++ +D  L    TTP  I L + L+ +   G  +V +E SSH + Q R+ G+
Sbjct: 133 CGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKMVDAGCEYVFMECSSHAIAQRRIGGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL RDH+DYH T + Y NAK   F++ LPK + AI  ADD   K  M    N
Sbjct: 193 TFTGALFTNLTRDHLDYHGTFENYRNAKKMFFDD-LPKSAFAITNADD---KNGMFMVQN 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               + +   +       ++  +H    + ++V+G D    F   G+F V N L   G  
Sbjct: 249 TKATIKTYSMERMADFRARIIEMHF-AGMYLNVDGNDVGVQF--IGKFNVSNLLAVYGAA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381
             +G     +L  L  LH V GR E +  +S G    VDYAHT ++L  +L  IR +  +
Sbjct: 306 RMLGKQPEDILVTLSTLHSVSGRLEPI-QSSEGVTAIVDYAHTPDALANVLNAIREVDKT 364

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           G+II V G GG+RD+GKRP+M + A+  +D  I+T DNPR E+P+ I  +++ G+     
Sbjct: 365 GQIITVCGAGGNRDKGKRPLMAQEAVKQSDRVIITSDNPRFEEPQDIIDDMLAGLNTQQM 424

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
              +   +R EAI+TA  +  K DV++VAGKGHE    +  G K    D ++IREI G+
Sbjct: 425 KKVVSIADRREAIKTACMLAKKGDVVLVAGKGHENYQEI-KGVKHHFDDREVIREIFGI 482


>gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 487

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 250/476 (52%), Gaps = 32/476 (6%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           IF    R+  I E++ DSR+++AG +F+A+ G K DG   I  A+ +GA A+    AY +
Sbjct: 8   IFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAV----AYEV 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135
           +  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V Q  
Sbjct: 64  EGATVLPLTDVPLIPVKGLAAQLSDIAGRFYGDPSRQLNLVGVTGTNGKTSVTQLVAQAL 123

Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             + QR GL    +G   T      Q    TTP+PI +   L+ L + G   V++E SSH
Sbjct: 124 DLLGQRCGL----VGTLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADD 250
           GLDQ R+  +       TNL RDH+DYH T +AY  AK +LF   +L  +    +I  DD
Sbjct: 180 GLDQGRVAALAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWNDLRCR----VINLDD 235

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            + +++    H +     S+     +++ ++     +  + T+     +      L G F
Sbjct: 236 DFGRQLAADKHESRLITYSLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G++ AL  +L  L KL    GR + +G  ++   + VDYAHT ++
Sbjct: 296 NLSNVLAAVGALL--GLEYALDEILAVLPKLEGPAGRMQRLGGGTQP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L  +R    GR++ +FGCGGDRD+GKRP+M ++   LAD  +VTDDNPRSEDP +I
Sbjct: 353 LEKVLLALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQI 412

Query: 429 RAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             +I  G     EK      R  AI   I   +  DV+V+AGKGHE    + NG++
Sbjct: 413 FDDIRAGFSA-AEKVEFVAGRGLAIARLIASASADDVVVLAGKGHEDYQEI-NGQR 466


>gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
 gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
          Length = 483

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 264/476 (55%), Gaps = 32/476 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V  DSR  +  ++F+AI G K DG L++ +AI  GA A+VV     ++++       
Sbjct: 22  IGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAIAVVVDR--EIKEYPGI---- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           T +LV D  R  ++  AS  Y        ++ VTGT+GK+SV   ++ I +R    + ++
Sbjct: 76  TTVLVED-ARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D  +    TTP  + L +  S + ++GV +V +E SSH L   R++  +
Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALKRVNECE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+H   + Y   K +LF+  + K + ++I  DD YS  ++    ++
Sbjct: 192 FDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFK--MAKRA-SVINIDDKYSSMMI---ESS 245

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +VL+ G +   ++  K +    +  +  + +E K  +    +PG F VYNAL A  + 
Sbjct: 246 KAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGLFSVYNALAAITVA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI    V E L ++  V GRFE V T  +   +++DYAHT + ++ +++ ++   +G
Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFEPVET-GKDFYVFIDYAHTPDGIQNMMEALKEYKAG 363

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R I++FG GGDRD+ KRP+MG+IA   AD  I+T DNPRSE+P +I ++I  GI      
Sbjct: 364 RKILLFGAGGDRDRIKRPLMGEIAGKYADFCILTSDNPRSEEPREIISQIEEGIKKTDCP 423

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
           ++   NR EAIR A+    K DV+++AGKGHET  I+  G K +  D  +I++EIL
Sbjct: 424 YVVIENRKEAIRYALLNAQKDDVIILAGKGHETYQII--GNKVIPFDEREIVKEIL 477


>gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
 gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
          Length = 476

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 249/478 (52%), Gaps = 32/478 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR ++   +FVAI G+  +GH FI +AI QGA  I+       +     I + 
Sbjct: 12  IKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGALVIIC------EKLPNDIVNG 65

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + V N+++ L+  A+  Y ++P +   ++ VTGT+GK+++A+ +  +  ++G   F+
Sbjct: 66  VTYVQVANSKEALAYMAANFY-ENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAG---FK 121

Query: 147 IGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+         D   TTP  + +   L+ ++ +GV +  +E SSHG+DQHR  G+
Sbjct: 122 VGLLSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHRTTGL 181

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G FTNL  DH+DYH +   Y + K R F+E LP  + A+   DD  + EVM    N
Sbjct: 182 VFAGGIFTNLSHDHLDYHSSFAEYRDVKKRFFDE-LPASAFALTNVDDK-NGEVM--LQN 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +  + G +    +      I   Q   + ++  D +    L G F  YN L      
Sbjct: 238 TKAKQYTYGLKN---YADYKAQILENQFTGLLLKINDQEVWSRLIGSFNAYNILAIYAAA 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+++   L+ + +LH V GRF++  +        VDYAHT ++L+ +L  I  I + 
Sbjct: 295 ELLGLETLENLKFISELHSVNGRFQYFISPEEKITAIVDYAHTPDALKNVLDTINAIRTK 354

Query: 383 --RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439
              +I V GCGGDRD+ KRP MG IA  L+   I T DNPR+ED + I  EI  G+ P  
Sbjct: 355 NEELITVVGCGGDRDRTKRPKMGHIASALSSKVIFTSDNPRTEDADAIIEEIEKGVEPQN 414

Query: 440 IEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             K     NR +AI+TA +M    D++++AGKGHET   V NG+K    D  I+ E L
Sbjct: 415 FNKTVSISNRKQAIKTACQMAQANDIILIAGKGHETYQEV-NGQKHDFDDYKIVSEFL 471


>gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
 gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
          Length = 482

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 161/504 (31%), Positives = 263/504 (52%), Gaps = 48/504 (9%)

Query: 14  LINQL--SIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           L+N+L  +I P+Q     + +I  ++ DSR ++AG +F+A+ G + DGH +IP AI +GA
Sbjct: 2   LLNKLLKAIQPVQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYIPTAIEKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            A++       +D      +    + V ++       A+  YG       ++ VTGT+GK
Sbjct: 62  VAVLC------EDMPEEPVAGITYIQVKDSEDATGKIATTFYGDPTSKMELVGVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           +++A+ +    +  G   +++G  ST+ ++  D  +    TTP PI L + L  ++ +G 
Sbjct: 116 TTIATLLYNTFRYFG---YKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKMADEGC 172

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ +PK +
Sbjct: 173 KYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNA 231

Query: 243 PAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVE 296
            ++   DD      ++    + +    R LS  ++G+ +  H + +    N  ++ +   
Sbjct: 232 FSLTNLDDKNGLVMTQNTRSKVYTYSLRSLS-NFKGRVLESHFEGMLLDFNNHELAVQFI 290

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK           F   N L   G  + +G     VL  L  LH V GRF+ V  + +G 
Sbjct: 291 GK-----------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAV-RSPKGV 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I
Sbjct: 339 TAIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +I++EI 
Sbjct: 459 ENYQEI-KGVKHHFDDKEILKEIF 481


>gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 492

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 259/483 (53%), Gaps = 33/483 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ K+    I+ ++I   Q  + ++  ++ DSR +Q G++FVAI G K DGH FI  A  
Sbjct: 6   LLLKELLSAIDVIAISGPQ--DIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNARE 63

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A+VV     +        ++  ++ V ++R+ L+L A + YG HP   + V G +G
Sbjct: 64  AGATAVVVEREVEVP-------ADLTVIKVSDSRQALALLADKFYG-HPSRKMTVVGVTG 115

Query: 126 KSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLS 178
            +   +    +  I ++ GL    +G   TI +   +  L    TTP  + L K ++ + 
Sbjct: 116 TNGKTTTTHLIAAIWRQVGLKPGVVG---TIHNLIGEKALPVTNTTPESLDLHKLMAEMV 172

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            + V  V++E SSH L  +R+ G+K     FTN+ +DH+D+H   + Y  AK +LFE+ +
Sbjct: 173 REDVQGVAMEVSSHALALNRVAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKLFEKDI 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297
                A+I ADD  ++++ K +     +V + G +    +  K +         T++   
Sbjct: 233 KY---AVINADDQAAEQLFKISRG---KVYTYGIENNADVRAKDIQVTARGVSFTVNSPW 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +      L G F VYN+L A  + + +G +   V   LE +  V GRFE V    +   
Sbjct: 287 GEQRLELKLTGRFNVYNSLAAYTVGMVLGYNGMDVKAALEGVTGVAGRFELV-DQGQDFA 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE IL   R IT GR+I VFGCGGDRD+ KRPIMG+IA   +D+ +VT 
Sbjct: 346 VVVDYAHTPDGLENILTTARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDLPVVTS 405

Query: 418 DNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+EDP+KI  +I+ G+ G     ++   +R EAI  AI +    DV+V+AGKGHE  
Sbjct: 406 DNPRTEDPQKIIEDILVGLQGKDPGSYLVIADRREAINRAINLAEPGDVVVIAGKGHEDY 465

Query: 473 HIV 475
            I+
Sbjct: 466 QII 468


>gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
          Length = 495

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 167/488 (34%), Positives = 242/488 (49%), Gaps = 30/488 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+V  +     D S   
Sbjct: 19  ERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q + +    
Sbjct: 79  MHGVPVIYLRNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWAKM---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R
Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + 
Sbjct: 194 VAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLG 251

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   A    +     VG+ G ++   +V    N   +       +      L G F V N
Sbjct: 252 QLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLESRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +++G     +L     L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLSLGYPLTQLLAAASHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ 
Sbjct: 371 AARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILS 430

Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           G+   ++ G+      R EA+ +AI      DV+++AGKGHE   +V N     S    +
Sbjct: 431 GL---LDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYSDRVTV 487

Query: 489 IREILGLI 496
            R +LG++
Sbjct: 488 AR-LLGVV 494


>gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 486

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 269/509 (52%), Gaps = 44/509 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+++DLIYK        +S+  +  R +  +  +  DSR ++ G +F+A+ G   DGH F
Sbjct: 1   MQIKDLIYK--------VSLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I   I +GA A+V      L +  +T  ++  I+ V ++ + L + AS  Y      +  
Sbjct: 53  IADVIQKGATAVVCEE---LPEIEST--ADCTIIQVKDSAEALGMIASNFYDSPSSKLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK++  + + ++ ++ G   ++ G  ST+ +  +D  +    TTP  I L K 
Sbjct: 108 VGVTGTNGKTTTVTLLYRLFRKLG---YKTGLLSTVENIIEDKVVQATHTTPDAISLNKL 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +   G TH  +E SSH   Q R+ G++   G F+N+  DH+DYH+T   Y  AK +L
Sbjct: 165 LADMVKAGCTHCFMEVSSHAAVQRRIAGLQFAGGLFSNITHDHLDYHKTFDEYIKAK-KL 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ 290
           F + LP +S A+I +DD   + +++  RA      +L++  ++GK I           Q 
Sbjct: 224 FFDGLPNDSFALINSDDKRGRVMIQNTRAKTYTYSLLALADFKGKLIST-------TMQG 276

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + + V+G      F L G F  YN L      + +G D   VL  L  +    GRFE   
Sbjct: 277 LEMDVDG--IQAWFRLIGNFNAYNLLAVYATAVLLGEDKEEVLMQLSTIEAANGRFEQQI 334

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           + +R   + VDYAHT ++L+ +L+ I  +  + +II V GCGG+RD  KRP+M  IA   
Sbjct: 335 SATR-ITVIVDYAHTPDALKNVLETITELKGANKIITVVGCGGNRDAAKRPVMADIACQF 393

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVV 464
           +D  ++T DNPR+E+P+ I  E+  G+    +K      +R EAI+ A  + +  D+++V
Sbjct: 394 SDHVVLTSDNPRNEEPQAILTEMEKGVRIVDKKKVLSVLDRKEAIKVACTLASTGDIILV 453

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHET   +  G K    D  II+E+L
Sbjct: 454 AGKGHETYQEI-KGVKYPFDDRLIIKELL 481


>gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 494

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 244/458 (53%), Gaps = 32/458 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++  ++  SR I    +F AI G   DGH FIP+ IAQ  + +VV      +D    + 
Sbjct: 21  QEVGNITQSSRDITPNTLFFAIKGAHTDGHRFIPEVIAQQGKVLVV------EDLPEALA 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144
                + V +T + +   A+  YG HP     ++ VTGT+GK+++AS   Q+ ++ G   
Sbjct: 75  EGVTYVQVTDTSRAMGQIAAHFYG-HPSEQLRLVGVTGTNGKTTIASLSYQLFRQLG--- 130

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +++G  STI+ +    R     TTP  + L K L  +  QGVTH  +E SSHG+  HR++
Sbjct: 131 YKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRRMVGQGVTHCFMEVSSHGIALHRIE 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+    G FTNL +DH+D+H+T   Y + K + F+  LPK + A+   +D     +++  
Sbjct: 191 GLVFAGGVFTNLTQDHLDFHETFAQYRDTKKKFFDH-LPKTAFALTNIEDKNGAYMLQNT 249

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +A     ++G    F   K          +T+ V   + +    L G F  YN L    
Sbjct: 250 -SAHKSTYALGRAADF---KGQLLESTFAGMTLRV--GNHEVWTSLIGRFNAYNLLAIYA 303

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G +   VL  +  L  V GRF++  + S G  + VDYAHT ++L+ +++ I  I 
Sbjct: 304 TAVLLGEEPLEVLTQISTLRSVAGRFQYFVSPS-GVTVIVDYAHTPDALQNVIETILDIK 362

Query: 381 --SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-P 437
             S R+I V GCGG+RD+GKRPIM  IA  L++  I+T DNPR EDPE+I  E+  GI P
Sbjct: 363 DPSQRLITVVGCGGNRDKGKRPIMAHIATSLSEKVILTSDNPREEDPEEILREMEAGITP 422

Query: 438 GFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               K     +R +AI+ A  +  K D++++AGKGHET
Sbjct: 423 ENQHKSMTVTDRRQAIKVACHLAQKGDIVLIAGKGHET 460


>gi|170682313|ref|YP_001742207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
 gi|170520031|gb|ACB18209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
          Length = 495

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 252/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E   +   AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HRCGQAIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    ++   G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINLNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
 gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
          Length = 493

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 165/482 (34%), Positives = 255/482 (52%), Gaps = 30/482 (6%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L  F +Q     + ++  DSR +  G +FVAI G++ DG  FI QA+AQGA A+V     
Sbjct: 9   LRPFGIQAPALTLTDIQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVV----- 63

Query: 78  SLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
             ++    I  +TP+  +   +    LS  A   Y +  +  +++ +TGT+GKS+ A  V
Sbjct: 64  -FEEDGEFIPPSTPVPCIGMRDLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLV 122

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189
                   L   + G   TI +    N +    TT S + +   L+ L +QG   V++E 
Sbjct: 123 ---ANWRTLLGGKAGVMGTIGNGLFGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEV 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL QHR+  +   A  FTNL RDH+DYH T +AY  AK +L +  L  ES A+I  D
Sbjct: 180 SSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAKEQLLQ--LVDESNAVINRD 237

Query: 250 DAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           D    + +++   A     SV      + G+ +  +++       +  I+    +     
Sbjct: 238 DELGAKWLEKYPAA--VAFSVNGPIEHHSGRQLTAQQLDFHQQGFRAQINSSWGNGVLSA 295

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N L A G+ + +G D   +L    KL  V GR E  G       + VDYAH
Sbjct: 296 PLLGRFNVSNVLAAMGVMLVLGYDFNELLATAPKLQPVTGRMECFGGGDTPLAV-VDYAH 354

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  +A   AD  I+TDDNPR+E+
Sbjct: 355 TPDALEKALQALRVHCTGQLWCLIGCGGDRDRGKRPMMAAMAEQYADRVILTDDNPRTEE 414

Query: 425 PEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P +I A+++ G+  P  ++ + +R++AI  AI   +KQD+++VAGKGHE   I+   ++ 
Sbjct: 415 PARIMADMVAGLRDPAAVQVEHDRVKAIALAIGQASKQDIILVAGKGHEDYQIIGTDKRH 474

Query: 482 MS 483
            S
Sbjct: 475 YS 476


>gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 491

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD  S   M++A  A      +  Q  F              + I+  G  FD  
Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KANNIRITSHGSTFDLR 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             ++
Sbjct: 464 YQVI 467


>gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 485

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 165/483 (34%), Positives = 257/483 (53%), Gaps = 35/483 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I  ++ DSR +Q G +FVA+ G + DGH +I +A+ +GA A+V  +   +Q    T  
Sbjct: 23  RNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAVEKGAVAVVCEAWPEVQAEGVTY- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
                + V ++   +   A+  YG     +  + VTGT+GK+++A+ +  + +  G   +
Sbjct: 82  -----VQVKDSESAVGRLATVFYGDPTSKLQLIGVTGTNGKTTIATLLYNMFRVFG---Y 133

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G  ST+ ++  D  +    TTP PI L + L  ++ +G  +  +E SSH + QHR+ G
Sbjct: 134 KCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHAVAQHRIAG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K   G FTNL RDH+DYH+T + Y +AK   F+  LPK + A+   DD  +  +M +  
Sbjct: 194 LKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDG-LPKGAFAVTNVDD-RNGMIMVQNT 251

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN--ALVAA 319
            A  +  S+     F   K      + + + + V GK+     P  G F V N  A+ AA
Sbjct: 252 KAVVKTYSLRAAADF---KAKVLEESFEGMCLDVNGKEVS--VPFIGRFNVSNLLAVYAA 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +C+  G +  LV   L  L  V GRFE +  +  G    VDYAHT ++L  +L  +  I
Sbjct: 307 AVCMGRGAEDVLVA--LSTLRPVNGRFETI-RSKEGVTAIVDYAHTPDALVNVLSTVNEI 363

Query: 380 TS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               G +I V G GG+RD+GKRPIM + A+  +D  I+T DNPR E+P++I  +++ G+ 
Sbjct: 364 LKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVIITSDNPRFEEPQEIINDMLAGLD 423

Query: 438 -----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                  I   +R EAIRTA  M    DV++VAGKGHE    V  G K    D ++I+E+
Sbjct: 424 KEEMRKVISIVDRKEAIRTACMMARPGDVVLVAGKGHEDYQEV-KGVKHHFDDHEVIKEV 482

Query: 493 LGL 495
            G+
Sbjct: 483 FGI 485


>gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
 gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
          Length = 494

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 241/465 (51%), Gaps = 27/465 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +V++DSR ++ G +F+A+ G   DGH ++ +A+  GA A++VS           I S
Sbjct: 23  EILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAVAVLVSKPIE-------ISS 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V++TR  +       +  +P N + + G +G +   +    I         ++G
Sbjct: 76  DVCVITVEDTRAAMMACVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILRAQGHKVG 134

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              T+     D       TTP  + L   L  +  +GVTH  +E SSH L   R+ G++ 
Sbjct: 135 VIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY 194

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKR 259
               FTNL +DH+D+H+T + Y  AK +LFE++     +     A+I  DDAY + V+++
Sbjct: 195 DTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVKSGKGAVINIDDAYGQRVVEK 254

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              A     S+   G  ++   V       + T+S +G D+       G F VYN L A 
Sbjct: 255 T-TAPIITYSIDGSGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 312

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G C+  GI    + + L+    VPGRFE +    +   + VDYAHT + LE IL+  + I
Sbjct: 313 GACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAI 371

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DNPR+EDP +I  ++  G+   
Sbjct: 372 QENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVEVGVKDG 431

Query: 440 IEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + +G       +R EAI+ AI+     D++++AGKGHE   I+ +
Sbjct: 432 LREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKGHEDYQILKD 476


>gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
 gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
          Length = 494

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR--SNTPIL 93
           DSR +  G  FVA+ G+  DG  FI  AI  GA A++  S    Q  + TI      P++
Sbjct: 33  DSRKVTNGTTFVAVKGHAVDGRRFIASAIELGANAVIAESCE--QHLAGTIEYIDTIPVI 90

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            +      LS  ASRLY  H   I+ VTGT+GK+++   + Q  +  G  +  +G T   
Sbjct: 91  YIAQLGTHLSALASRLYPLHEHQIIGVTGTNGKTTITQLIAQWLELIGKKAAVMGTTG-- 148

Query: 154 SSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + F  D +    TT + I + + L  L  Q     ++E SSHGL Q R+  +    G F+
Sbjct: 149 NGFLDDLQPAANTTGNAIEIQQTLHQLEQQSAQFTALEVSSHGLVQGRVKALDFAVGVFS 208

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL RDH+DYH T + Y  AK  LF E       A+I  DD      ++R  NA    L  
Sbjct: 209 NLSRDHLDYHGTMEEYAEAKFSLFSE--HNCHNAVINIDDQVGSRWVERLDNAIAVSLKP 266

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               + +  K V   +++  +++S++G     D + PL GEF   N L+A    +A+GID
Sbjct: 267 TAIERAVWAKSVA--YSESGISLSIDGMFGAGDCVVPLIGEFNASNVLLAMTTLLALGID 324

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             L+LE    L  V GR E   T     ++ VDYAHT ++LE  L  +R    G++  +F
Sbjct: 325 KQLLLETASSLKPVLGRMELF-TAENKAKVVVDYAHTPDALEKALNALRVHCQGQLWAIF 383

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445
           GCGGDRD GKRP+M  I   LAD  I+TDDNPRSE P +I  +++ G+      + + +R
Sbjct: 384 GCGGDRDTGKRPMMAAIGERLADRVILTDDNPRSESPAEIVKDMLVGMNQPDTAVVEHSR 443

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +A++ A+   +  D++++AGKGHE   ++ +
Sbjct: 444 FDALQFALANSHADDIILLAGKGHEDYQVMAH 475


>gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
 gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
          Length = 496

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 240/465 (51%), Gaps = 27/465 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +V++DSR ++ G +F+A+ G   DGH ++ +A+  GA A++VS           I S
Sbjct: 25  EILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAVAVLVSK-------PVEISS 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V++TR  +       +  +P N + + G +G +   +    I         ++G
Sbjct: 78  DVCVITVEDTRAAMMACVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILKAQGHKVG 136

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              T+     D       TTP  + L   L  +  +GVTH  +E SSH L   R+ G++ 
Sbjct: 137 VIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKR 259
               FTNL +DH+D+H+T + Y  AK +LFE++     +     A+I  DDAY   V+++
Sbjct: 197 DTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAVINIDDAYGHRVVEK 256

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              A     S+   G  ++   V       + T+S +G D+       G F VYN L A 
Sbjct: 257 T-TAPIITYSIDGSGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 314

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G C+  GI    + + L+    VPGRFE +    +   + VDYAHT + LE IL+  + I
Sbjct: 315 GACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAI 373

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DNPR+EDP +I  ++  G+   
Sbjct: 374 QENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVEVGVKDG 433

Query: 440 IEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + +G       +R EAI+ AI+     D++++AGKGHE   I+ +
Sbjct: 434 LREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKGHEDYQILKD 478


>gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
 gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
          Length = 495

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 236/453 (52%), Gaps = 30/453 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +Q G ++  + G   DGH F  QAIAQGA A++V     L         + P L V
Sbjct: 36  DSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAAALLVERILPL---------DIPQLQV 86

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
              R+ +   A+ LY  HP     ++ VTGT+GK+++   V+ I    G     IG   +
Sbjct: 87  KKVREVMGNLAANLY-DHPAAKLEVVGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGA 145

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            I+        TTP  I L K L  +  +GV    +E SSH L   R+ G +  AG F+N
Sbjct: 146 RIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSN 205

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLS 269
           L +DH+DYH+T + Y  AK +LF  L   + P   ++  DD  ++ +++ +      V++
Sbjct: 206 LTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNGDDPAAETLIRLS---AAPVVT 262

Query: 270 VGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G     +  +   +    +  + T+  +G+     +  PG F VYNAL A    +  G 
Sbjct: 263 YGVNADLLDYRAEDILLTADGVKFTVRFKGEAEQVEYSTPGMFSVYNALAAFAWGVESGR 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRI 384
               V E L  +  VPGRFE V    R G+   I VDYAHT + LE + +  +  T GR+
Sbjct: 323 SPGQVREALAAVQGVPGRFESV----RMGQPFQIIVDYAHTPDGLENVCRTAQEFTQGRL 378

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442
           I VFGCGGDRD+GKRP MG IA +L+D  IVT DNPR+EDP +I  +I+ GI G  +   
Sbjct: 379 ITVFGCGGDRDKGKRPQMGAIAEELSDHVIVTSDNPRTEDPRQIIRDILEGIEGIDYTAN 438

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            NR EAI  A  +  + D +++AGKGHE   I+
Sbjct: 439 VNRREAIECACLLAKEGDTVLIAGKGHEDYQII 471


>gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
 gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
          Length = 507

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 160/494 (32%), Positives = 247/494 (50%), Gaps = 23/494 (4%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      +  I+ +  DSR + +G +FV  +G   DGH F+PQA  QGA 
Sbjct: 5   ELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQGAV 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
            IV +    + +      S   +++V +T   LS  A   YG+  E+  ++ +TGT+GK+
Sbjct: 65  VIVATKEVEIGE------SVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           + +  ++ I +  GL +  IG  S        QD   TTP  +YL K ++ +        
Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPA 244
            +E SSH L Q R   I      FTNL RDH+DYH+ + +Y  AK +LF  ++ P     
Sbjct: 179 VMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRK 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DD  +   +    N    V++ G +    +H   +     +  V +     + +  
Sbjct: 239 VVNIDDPNAGYFVSLG-NPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEIS 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   VYN L A  + IA+      ++  +E++  VPGR E V    +   + VDYA
Sbjct: 298 SGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV-DEEQPFAVIVDYA 356

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L  +L  +R     RII V GCGGDRD+GKRP+M KIA   +++ I T DNPRSE
Sbjct: 357 HTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIFTSDNPRSE 416

Query: 424 DPEKIR----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP K        I +G   F+    +I A+R A+ M  + D +V+AGKGHE   I+   E
Sbjct: 417 DPRKFERSYYPPIWNGNRVFVYDLRKI-AVRAAVAMGEEGDAVVIAGKGHEKYQIIGK-E 474

Query: 480 KKMSVDCDIIREIL 493
           +K   D +  RE L
Sbjct: 475 RKYHDDREECREAL 488


>gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 513

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD  S   M++A  A      +  Q  F              + I+  G  FD  
Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSTFDLR 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             ++
Sbjct: 464 YQVI 467


>gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 494

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 245/474 (51%), Gaps = 38/474 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++  DSR +  G +FVAI G++ DG  FI QA+AQGA A++        +F A     
Sbjct: 22  LTDIQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVAQGATAVLFEED---GEFVAPAL-G 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P L + +    LS  A   Y +     +++ +TGT+GKS+ A  V   C    L   + 
Sbjct: 78  VPCLGIPDLPARLSELAGYFYDQPASKLDLVGITGTNGKSTTALLVANWCT---LLGGKA 134

Query: 148 GPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +  F +  +   TT S + +   L+ L +QG   V++E SSHGL QHR+  + 
Sbjct: 135 GVMGTIGNGLFGELVEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALP 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKE 255
             A  FTNL RDH+DYH T +AY  AK  L +  L  E  A++ ADD        AY   
Sbjct: 195 FAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVAEPCAVLNADDRLGRQWLAAYPAA 252

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQV 312
           V    H         G+ G+ +  +     H  QQ     I+    +     PL G F V
Sbjct: 253 VAFSVHGP-----VAGHPGRQLTAQDP---HFHQQGFRTQINSSWGNGVLSAPLLGRFNV 304

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +G D   +L    +L  V GR E  G   +     VDYAHT ++LE  
Sbjct: 305 SNVLAAMGAMLVLGYDFDELLASAPQLQPVTGRMECFG-GGKAPLAVVDYAHTPDALEKA 363

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR+  + GCGGDRD+GKRP+M  +A   AD  I+TDDNPR+E+P +I A++
Sbjct: 364 LQALRVHCEGRLWCLVGCGGDRDRGKRPMMAAMAELHADRVILTDDNPRTEEPARIMADM 423

Query: 433 IHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           + G+  PG ++ + +R +AI  A+   +KQD+++VAGKGHE   I+   ++  S
Sbjct: 424 VAGLRDPGAVQIEHDRTKAIELALSQASKQDIILVAGKGHEDYQIIGTDKRHYS 477


>gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
 gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
          Length = 462

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 253/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I  G +F+A+ G + DGH +IP AI +GA A++       ++    +++
Sbjct: 2   EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLC------EELPEELKA 55

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG       ++ VTGT+GK++VA+ +    +  G   ++
Sbjct: 56  GITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFG---YK 112

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L + L  ++  G  +  +E SSH + Q R+ G+
Sbjct: 113 VGLVSTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGL 172

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F+E LPK + ++   DD      ++    
Sbjct: 173 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKGAFSLTNLDDKNGLVMTQNTRS 231

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R LS  ++GK +  H + +    N  ++ +   GK           F  YN L
Sbjct: 232 KVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK-----------FNAYNLL 279

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ +  + +G    VDYAHT ++L  +L  I
Sbjct: 280 AVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAI-RSPKGYTAIVDYAHTPDALVNVLNAI 338

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K +  L+D  I+T DNPR E+P+ I  +++ 
Sbjct: 339 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLA 398

Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+        I   +R EAI+TA  +    DV++VAGKGHE    +  G K    D +I+
Sbjct: 399 GLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHENYQEI-KGVKHHFDDKEIL 457

Query: 490 REIL 493
            EI+
Sbjct: 458 NEIM 461


>gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes Clip81459]
 gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-064]
 gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 1816]
          Length = 491

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD  S   M++A  A      +  Q  F              + I+  G  FD  
Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSTFDLR 284

Query: 304 FPLP---------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P+          G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             ++
Sbjct: 464 YQVI 467


>gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Listeria monocytogenes str. Scott A]
          Length = 494

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 8   ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 68  IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 179 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 238

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD  S   M++A  A      +  Q  F              + I+  G  FD  
Sbjct: 239 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSTFDLR 287

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 288 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 348 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 407 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 466

Query: 472 VHIV 475
             ++
Sbjct: 467 YQVI 470


>gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 481

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 255/478 (53%), Gaps = 31/478 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++  V  DSR +  G +FVAI G + DGH FI +A+AQGA A++  +        A +
Sbjct: 20  EVQVTAVDIDSRKVGPGHLFVAIKGTQVDGHAFISKAVAQGAVAVLCET------MPAEL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V++T   +   A+  YG+  + +  + VTGT+GK+++A+ +  + ++ G   
Sbjct: 74  PQGVTFVQVESTEDAVGPVATLFYGEPSKKLKLVGVTGTNGKTTIATLLYDMFRKFG--- 130

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            + G  ST+ ++ +D  +    TTP PI L   L  +   G  +V +E SSH + Q R+ 
Sbjct: 131 HRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQKRIG 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+    G F+NL RDH+DYH+T + Y NAK   F ++LPK++ AI  ADD  +  VM + 
Sbjct: 191 GLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFF-DMLPKQAFAITNADDK-NGMVMVQN 248

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A  +  S      F    K+   H  + + + + G +    F   G+F V N L   G
Sbjct: 249 TRATVKTYSTRSMADF--KAKILECHF-EGMYLEINGAEVGVQF--IGKFNVSNLLAVYG 303

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G     +L  +  LH V GR E +  +  G  + VDYAHT ++LE +L  I  + 
Sbjct: 304 TAVMLGKRPEDILLVMSTLHSVNGRLEPL-RSPEGYTVIVDYAHTPDALENVLNAIHEVL 362

Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +  G++I V G GG+RD+GKRP+M   A+  +D  I+T DNPR EDP+ I  +++ G+  
Sbjct: 363 NGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVIITSDNPRFEDPQAIINDMLAGLNA 422

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                 +   +R EAIRTA  M  K DV++VAGKGHE    +  G K    D ++++E
Sbjct: 423 QQMKKVVSIVDRREAIRTACMMAQKGDVVLVAGKGHEDYQEI-EGVKHHFDDKEVVKE 479


>gi|83648527|ref|YP_436962.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636570|gb|ABC32537.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 508

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 161/491 (32%), Positives = 248/491 (50%), Gaps = 45/491 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++++  DSR + +G +FVA  G   +G  ++  A+A+GA A+++             + +
Sbjct: 27  LSDIQQDSRKVTSGALFVAAEGVSSNGAQYVEDALARGARAVLLPGTRQ----HVYEKGD 82

Query: 90  TPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + + N R  + + A R +G+  H   ++ VTGT+GKSSV  +V Q+ +  G+S+  +
Sbjct: 83  VVFIELANVRPVVGIIAHRFFGQATHRMKVVGVTGTNGKSSVTHYVAQMAEGLGMSAAVV 142

Query: 148 GPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           G       + + + L     TTP  + L + L+ L  +G+  V++E SSH LDQ R  G+
Sbjct: 143 GTLG----YGRPDSLKATTHTTPDAVSLHRVLAELRDEGIELVAMEVSSHALDQDRAAGV 198

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+ RDH+DYH T +AY  AK RLF  L       +   DD Y     +    
Sbjct: 199 NFDVAVLTNITRDHLDYHGTLEAYAEAKKRLF--LSDSVRWKVFNQDDPYGARWAQELQG 256

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313
                 S+G Q +      VCA    + +    +G  F              L GEF + 
Sbjct: 257 PKTLTFSIGKQDQTA--ADVCA----EDIHFDADGMSFALDLGATREPARLALVGEFNLS 310

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A     A+ ++   V + L +L  V GR + +  + +   + VDYAHT ++LE+ L
Sbjct: 311 NALAACAAMSALKVEPQAVRQQLARLTPVAGRMQRLHED-KAPTVLVDYAHTPDALEVAL 369

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K  R    GR+  VFGCGGDRD GKRP+MG +A   AD  ++TDDNPR EDPE I A+I+
Sbjct: 370 KAARRHCPGRLWCVFGCGGDRDPGKRPLMGAVAAQYADEVVLTDDNPRGEDPESIVAQIV 429

Query: 434 HGIPGFIEKGN-------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            G     E+G        R +AIR A+E   ++DV+++AGKGHE    +  G +    D 
Sbjct: 430 KG----AEQGAHFQVVRPRNDAIRFAVEHAAQEDVILLAGKGHEDYQEI-QGRRLPFSDI 484

Query: 487 DIIREILGLIL 497
            I R+ L  ++
Sbjct: 485 AIARDCLASVV 495


>gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
 gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
          Length = 498

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 169/485 (34%), Positives = 258/485 (53%), Gaps = 36/485 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL + I +D PE++   +  P    E  I  ++ +S+ +    +FVAI G K DGH +I
Sbjct: 6   MKL-NCILED-PEIVEVRNNNP----EIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA- 119
             AI++GA  I+V   + L ++   I      + V N R  L   +SR YG HP   L+ 
Sbjct: 60  GDAISRGA--ILVIYEHDLDEYQDDIM----YVKVKNARHMLGTMSSRFYG-HPSEALSI 112

Query: 120 --VTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNR-LTTPSPIYLAKALS 175
             VTGT+GK+++   ++ I Q+ G     IG   + I     DN   TTP  + + + +S
Sbjct: 113 TGVTGTNGKTTITHMLKSIFQKDGRKCGLIGTINNQIGDEIIDNAGRTTPDSLEVQEIIS 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G  ++ +E SSH LD  R++G+    G F+NL +DH+DYH+T + YF AK +LF 
Sbjct: 173 EMVEAGCQNLVMEVSSHALDLDRVNGVAFDYGIFSNLTQDHLDYHKTFENYFEAKAKLF- 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVT 292
                    II  DD + K++  R A   G  V S G   +  F       +I   +   
Sbjct: 232 --TYTSKANIINCDDVWGKKLYDRCAQKKGVAVYSYGLNPECDFYARDMKYSIEGTRYTL 289

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ +G++ +    +PGE  VYN++ A    +  GI   ++ E L  +  V GR E +  +
Sbjct: 290 VTKDGEE-EIFISIPGEVMVYNSMAAIINALLEGISIEVIKEALASMSGVEGRMERLDLD 348

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    I +DYAH+ +SLE +LK+++T+  G++ +VFGC GDRD+ KRPIMG+IA + AD 
Sbjct: 349 TEFD-IIIDYAHSPDSLERLLKSVKTMYDGKVYLVFGCNGDRDKEKRPIMGRIAGEFADH 407

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-------RIEAIRTAIEMLNKQDVLVVA 465
            IVT DNP SEDP+ I   +   +    EK +       R +AI  A  +    DVLV+A
Sbjct: 408 VIVTSDNPASEDPQSIIDTVAAAVA---EKTDACETVLRRWDAIYYAATLPKAGDVLVLA 464

Query: 466 GKGHE 470
           GKGHE
Sbjct: 465 GKGHE 469


>gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
 gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
          Length = 500

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 239/463 (51%), Gaps = 26/463 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  ++SDSR      +FVA+ G   DGH FI  A++ G++A+V       ++   T 
Sbjct: 23  EMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGDAVSLGSKAVVC------EELPETP 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 ++V + R+ ++  A   YG   +  +I+ VTGT+GK++ A  +  +    G+ +
Sbjct: 77  AERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGVTGTNGKTTTARLMAGMMNDCGIRT 136

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             IG   T  + A D ++    TTP    L +  S ++ +G   V +E SSH L   R  
Sbjct: 137 GYIG---TGLALAGDEKILLERTTPEAEELHRLFSIMAERGCRAVVMEVSSHALVLQRTF 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVM 257
           GI      +TNL +DH+D+H T ++Y +AK  LF  + P E   ++ ADD    +  E  
Sbjct: 194 GIVFSGAVYTNLTQDHLDFHHTMESYASAKRLLFGAVSP-EGFVVVNADDPRAGFMAENR 252

Query: 258 KRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            ++    C V    Y   +GK      + A     +V I  +G+ +D LF L G F V N
Sbjct: 253 GKSRLYCCTVGDSHYACSEGKAFSATLLEAGLQAARVAIDADGRGYDVLFRLTGLFNVMN 312

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L      +A+G++   VL  L     V GR E V   +      VDYAHT ++LE ++ 
Sbjct: 313 LLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAAGDFFAVVDYAHTPDALEKVIG 372

Query: 375 NIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +  +    G +IVVFGCGG+RD  KR +MG+IA   AD  I+T DNPR E+PE I  +I
Sbjct: 373 TLNELKPEEGELIVVFGCGGNRDHEKRSVMGRIASRGADRLIITSDNPRDENPESILDDI 432

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
             GI  PG++   +R EAI   + +L + D+L+VAGKGHET  
Sbjct: 433 AEGIVSPGYMRFCDRAEAIHCGVNLLKEGDILLVAGKGHETCQ 475


>gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
 gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
          Length = 491

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 254/477 (53%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +F+ + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       ++  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  D  
Sbjct: 237 VLNSDDPVAEEYMR---STAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +   +G +  + GCGGDRD+ KRP+M  +A++ A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  ++I G  G  +    +R EAIR AI     +D++++AGKGHET  I+
Sbjct: 410 RSEDPVAILDDMIKGAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHETYQII 466


>gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
 gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
          Length = 494

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 241/463 (52%), Gaps = 29/463 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++DSR ++AG +F+A+ G   DGH ++ +A+  GA A++VS           +  +  
Sbjct: 26  DITADSRAVKAGSLFIALDGATVDGHNYVNKAVEAGAVAVLVSKPVE-------VSGDVC 78

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++ V++TRK +       +  +P N + + G +G +   +    I         ++G   
Sbjct: 79  VITVEDTRKAMMACVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILKGQGHKVGVIG 137

Query: 152 TISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T+     D       TTP  + L   L  +  +GVTH  +E SSH L   R+ G++    
Sbjct: 138 TVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEYDTA 197

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESP----AIIYADDAYSKEVMKRAHN 262
            FTNL +DH+D+H+T + Y  AK +LFE++  P ++     AII  DD Y   V+++   
Sbjct: 198 VFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGKGAIINIDDEYGHRVIEKT-- 255

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               +++    GK  ++   V       + T+S +G D+       G F VYN L A G 
Sbjct: 256 -TAPIITYSIDGKGTLNAHDVEMTPKSSRYTVSYDGNDYTVAMNTTGLFNVYNTLAAIGA 314

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C+  GI    + + ++    VPGRFE +    +   + VDYAHT + LE IL+  + I  
Sbjct: 315 CLLEGISMEDIDKAMKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAIQE 373

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            RIIVVFGCGGDRD  KRPIMG+IA    DI  VT DNPR+EDP +I  ++  G+   + 
Sbjct: 374 NRIIVVFGCGGDRDATKRPIMGRIAAQYGDIVYVTSDNPRTEDPVQIVKDVEVGVKEGLR 433

Query: 442 KG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +G       +R EAI+ AI+     D++++AGKGHE   I+ +
Sbjct: 434 EGSHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDYQILKD 476


>gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
          Length = 521

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 165/468 (35%), Positives = 242/468 (51%), Gaps = 44/468 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+SDSR +  G +FVA+ G   DGH FI  A+ +GA +++       ++  + I  
Sbjct: 36  EVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERGAGSVIC------EEIPSGIED 89

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V + R  L+  A   YG   +   I+ VTGT+GK++ +  +  +    G+S   
Sbjct: 90  GVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNGKTTTSKLITSMLNARGISCGY 149

Query: 147 IGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           IG  + + +FA+       TTP    L      +   G   V +E SSH L   R+ GI+
Sbjct: 150 IG--TNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRAVVMEVSSHALMLKRVHGIR 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--H 261
             A  FTNL  +H+D+H+T +AY +AK  LF++L P +  A++  DD  +  +  R    
Sbjct: 208 FRAAVFTNLTPEHLDFHETMEAYASAKQLLFDQLTP-DGFAVLNRDDPAAPFMAARVLPE 266

Query: 262 NAGCRVLSVGYQ--------------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
              C  LS                  G  I   +V A+H  + V +S+E +       LP
Sbjct: 267 KIYCCSLSARQDTSLACGNSFFAEITGASIASSRV-ALHFPETV-VSIEVR-------LP 317

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L AA +   +G+D   +   L  +  V GR E VG +  GG  +VDYAHT +
Sbjct: 318 GSFNVMNMLEAASVGFGLGLDPDEICRALSLVSAVEGRMERVGESCSGGMAFVDYAHTPD 377

Query: 368 SLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +L  +L  +R +     R+IVVFGCGG+RD+ KRP MG+IA +LAD  I+T DNPR EDP
Sbjct: 378 ALFKVLSTLRDLKDEHSRLIVVFGCGGNRDRSKRPEMGRIASELADEVIITSDNPRDEDP 437

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           E I  EI  G+     +    +R EAI  A+ M+ K DVL+VAGKGHE
Sbjct: 438 EAILDEIEQGMNRDGRYRRIIDRAEAISVAVSMIGKGDVLLVAGKGHE 485


>gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 493

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 160/495 (32%), Positives = 255/495 (51%), Gaps = 22/495 (4%)

Query: 17  QLSIFPMQW----RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           QLS   + W    +   I+ ++ DSR +  G +FVAI G+  DG  FI  AI QGA A++
Sbjct: 3   QLSELLLPWCDLNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQGAVAVI 62

Query: 73  VSSAYSLQDFSATIR--SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
             +    ++ + T++   N  ++ +D+    LS  A   Y     N  ++ +TGT+GK++
Sbjct: 63  ADA--DKENIAGTVKVIDNAIVVYIDSLYTQLSAIAGAFYQADKRNMQLVGITGTNGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           ++  + Q        +  +G T   + S  +    TT SPI + + L+ L + G    ++
Sbjct: 121 ISQIIAQWTTLLEQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAKLTAL 180

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL Q R++ +   A  FTNL RDH+DYH     Y  AK  LF    PK S  II 
Sbjct: 181 EVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHRPKNS--IIN 238

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            DD    + +K   +A    L+      + GK +    V       +++IS +  +  F 
Sbjct: 239 GDDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIKLSISSDWGNVAFS 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G F   N LVA    +++G D   + +   +L+ V GR E   T+++  ++ VDYA
Sbjct: 299 VPLIGAFNASNILVAFAALLSLGYDIQALAQTASQLNAVIGRMELFATDNKA-KVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L+  L+ +R    G++  +FGCGGDRD GKRPIM  I    AD  I++DDNPRSE
Sbjct: 358 HTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPIMASIVEQQADAIILSDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +P  I  +++ G+          +R EA + A+   N+ D++++AGKGHE   ++ +   
Sbjct: 418 EPSLITDDMLVGLKNAESAHVIHDRFEACQFALSQANENDIILLAGKGHEDYQVLADKTV 477

Query: 481 KMSVDCDIIREILGL 495
             S D +  + +LGL
Sbjct: 478 HYS-DRETAQTLLGL 491


>gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens KN400]
          Length = 509

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/495 (33%), Positives = 247/495 (49%), Gaps = 59/495 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+IN +  DSR +++G +F A+ G   DGH FI  A  +GA A+V+            IR
Sbjct: 21  REINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAVAVVLEDETRAPCGMEWIR 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSF 145
                  V + R  +S  A+  YG+  + +  V  T       +   V+ I  R+G+ + 
Sbjct: 81  -------VGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTTTYLVEAIMSRAGIPAA 133

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G  S    S       TTP  + L   +  L  +G   V +E SSH L+Q R+D  + 
Sbjct: 134 VLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVMEVSSHALEQRRVDSCRF 193

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL------PKESPAIIYADDAYSKEVMK 258
               FTNL RDH+DYH+  ++YF +K RLF EL+      P+ + AI   DD+Y   +++
Sbjct: 194 DVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRAAAI-NRDDSYGARLVE 252

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGE 309
               A   V+S G            A    + V  SV+G     + P         L G 
Sbjct: 253 ---TAVAPVISYGLAAD--------AAVRAENVVFSVDGIAGTLVTPFGTALFHSHLLGR 301

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F +YN L A    + +G+   ++L  +E    VPGR E V  N RG  + VDYAHT ++L
Sbjct: 302 FNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERV-HNERGVTVLVDYAHTGDAL 360

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +LK +  + +GRII VFGCGGDRD+GKRP+M +I+   + + IVT DNPR+E+P  I 
Sbjct: 361 ENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLTIVTSDNPRTEEPAAII 420

Query: 430 AEIIHGI--------------PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            E++ GI               GF+EKG     +R +AIR A  +    D++++AGKGHE
Sbjct: 421 KEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVAVAGDIVLLAGKGHE 480

Query: 471 TVHIVTNGEKKMSVD 485
              I+  G +K   D
Sbjct: 481 DYQII--GTEKFHFD 493


>gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 482

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 252/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I  G +F+A+ G + DGH +IP AI +GA A++       ++    +++
Sbjct: 22  EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLC------EELPEELKA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG       ++ VTGT+GK++VA+ +    +  G   ++
Sbjct: 76  GITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFG---YK 132

Query: 147 IGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D       TTP PI L + L  ++  G  +  +E SSH + Q R+ G+
Sbjct: 133 VGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F+E LPK + ++   DD      ++    
Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKGAFSLTNLDDKNGLVMTQNTRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R LS  ++GK +  H + +    N  ++ +   GK           F  YN L
Sbjct: 252 KVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK-----------FNAYNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ +  + +G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAI-RSPKGYTAIVDYAHTPDALVNVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K +  L+D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+        I   +R EAI+TA  +    DV++VAGKGHE    +  G K    D +I+
Sbjct: 419 GLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHENYQEI-KGVKHHFDDKEIL 477

Query: 490 REIL 493
            EI+
Sbjct: 478 NEIM 481


>gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
 gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
          Length = 509

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/495 (33%), Positives = 247/495 (49%), Gaps = 59/495 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+IN +  DSR +++G +F A+ G   DGH FI  A  +GA A+V+            IR
Sbjct: 21  REINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAVAVVLEDETRAPCGMEWIR 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSF 145
                  V + R  +S  A+  YG+  + +  V  T       +   V+ I  R+G+ + 
Sbjct: 81  -------VGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTTTYLVEAIMSRAGIPAA 133

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G  S    S       TTP  + L   +  L  +G   V +E SSH L+Q R+D  + 
Sbjct: 134 VLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVMEVSSHALEQRRVDSCRF 193

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL------PKESPAIIYADDAYSKEVMK 258
               FTNL RDH+DYH+  ++YF +K RLF EL+      P+ + AI   DD+Y   +++
Sbjct: 194 DVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRAAAI-NRDDSYGARLVE 252

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGE 309
               A   V+S G            A    + V  SV+G     + P         L G 
Sbjct: 253 ---TAVAPVISYGLAAD--------AAVRAENVVFSVDGIAGTLVTPFGTAPFHSHLLGR 301

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F +YN L A    + +G+   ++L  +E    VPGR E V  N RG  + VDYAHT ++L
Sbjct: 302 FNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERV-HNERGVTVLVDYAHTGDAL 360

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +LK +  + +GRII VFGCGGDRD+GKRP+M +I+   + + IVT DNPR+E+P  I 
Sbjct: 361 ENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLTIVTSDNPRTEEPAAII 420

Query: 430 AEIIHGI--------------PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            E++ GI               GF+EKG     +R +AIR A  +    D++++AGKGHE
Sbjct: 421 KEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVAVAGDIVLLAGKGHE 480

Query: 471 TVHIVTNGEKKMSVD 485
              I+  G +K   D
Sbjct: 481 DYQII--GTEKFHFD 493


>gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
 gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
          Length = 491

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 255/477 (53%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+   E  +I  + +DSR ++ G +F+ + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+ +DD  ++E M+   +    V++ G      I  + +         T+    +  +  
Sbjct: 237 ILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP+ I  ++++ + G  +    +R EAIR+AI  +  +D++++AGKGHET  I+
Sbjct: 410 RSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETYQII 466


>gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
 gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
          Length = 482

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 252/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I  G +F+A+ G + DGH +IP AI +GA A++       ++    +++
Sbjct: 22  EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLC------EELPEELKA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG       ++ VTGT+GK++VA+ +    +  G   ++
Sbjct: 76  GITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFG---YK 132

Query: 147 IGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D       TTP PI L + L  ++  G  +  +E SSH + Q R+ G+
Sbjct: 133 VGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F+E LPK + ++   DD      ++    
Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKGAFSLTNLDDKNGLVMTQNTRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R LS  ++GK +  H + +    N  ++ +   GK           F  YN L
Sbjct: 252 KVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK-----------FNAYNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ +  + +G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAI-RSPKGYTAIVDYAHTPDALVNVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K +  L+D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+        I   +R EAI+TA  +    DV++VAGKGHE    +  G K    D +I+
Sbjct: 419 GLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHENYQEI-KGVKHHFDDKEIL 477

Query: 490 REIL 493
            EI+
Sbjct: 478 NEIM 481


>gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
 gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
          Length = 491

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD  S   M++A  A      +  Q  F              + I+  G  FD  
Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSTFDLR 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      D++++AGKGHE 
Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKGHED 463

Query: 472 VHIV 475
             ++
Sbjct: 464 YQVI 467


>gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 501

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 164/467 (35%), Positives = 239/467 (51%), Gaps = 25/467 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ---DFSATI 86
           + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  +V++ A   Q   +  A  
Sbjct: 21  LKQITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGA-GLVLAEADEGQTEIELDAKF 79

Query: 87  ------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138
                 R++  ++ V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q   
Sbjct: 80  AKYNLDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHN 139

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL Q+
Sbjct: 140 LLGGKSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQY 199

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E +
Sbjct: 200 RAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTK--AQVLNADDEVGREWL 257

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNA 315
            +  NA        +      +K      + Q V I+ E    + +    L G F V N 
Sbjct: 258 AKLPNAVAVSTDASFSSDHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNL 317

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMI 372
           L      + +G D   ++E    L  V GR E V +         + VDYAHT ++LE  
Sbjct: 318 LTTLASLLVLGHDLQKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKA 377

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A I
Sbjct: 378 LQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNTKIMANI 437

Query: 433 IHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 438 LKGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483


>gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria monocytogenes L99]
          Length = 491

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/484 (32%), Positives = 238/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESP 243
            SSH L Q R+ G       F NL +DH+DYH T   Y NAK  LF +L           
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA S   M+ A  A      +  Q  F              + I+  G  FD  
Sbjct: 236 AVLNADDAESVR-MQTATAAHVITFGIKQQADF----------KASNIQITSHGSTFDLT 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     +  LE +  V GRFE V    +
Sbjct: 285 TPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNA-GQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D +   I
Sbjct: 344 AFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             ++
Sbjct: 464 YQLI 467


>gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1005

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 164/503 (32%), Positives = 252/503 (50%), Gaps = 22/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            LQ++  ++  + I+ L +         I+ V+SDSR +  G +FVAI G   DG  FI 
Sbjct: 9   NLQEVQLEELLKEISSLELLGKAGFGGAISMVTSDSREVLPGSLFVAIKGYATDGGRFIR 68

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--A 119
            A+ +GA A++       ++F +        + V + RK L+  A   YGK  + +L   
Sbjct: 69  SAVERGAAAVIC------EEFPSDPALPCLYIKVADARKALAEAARIFYGKASDQLLIIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ A  +  +   +G+S+  IG     I         TTP    L      + 
Sbjct: 123 VTGTNGKTTTAKLITAMLNANGISAGYIGTNMCRIGELEIPLDRTTPEAHGLHALFRQML 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G     +E SSH L   R+ GI+  A  FTNL ++H+D+H+T   Y  AK +LF++L 
Sbjct: 183 EAGCKAAVMEVSSHALVLQRVYGIRFHAALFTNLTQEHLDFHETMHDYAEAKQQLFDQLS 242

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQ-----GKFIHLKKVCAIHNKQQV 291
           P +  A++  DD Y++++  R  +    C  +  G Q      +      +        +
Sbjct: 243 P-DGFAVLNIDDPYAEQMAARVADDKIYCCTMQRGLQPALSCSRLFAADLLQGTLASSTI 301

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +  +    LPG F V N L AA +   + + +  +   L  +  V GR E VG 
Sbjct: 302 VLHFPDESVEMQVKLPGNFNVMNVLEAAAIGTGMALSAKEICNALSAVSTVEGRMERVGE 361

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           + +G   +VDYAHT ++L   L  +  +   + R+IVVFGCGG+RD+ KR  MG+IA ++
Sbjct: 362 SRQGWMAFVDYAHTPDALFKALDALHGLKEDASRLIVVFGCGGNRDKEKRSEMGRIASEI 421

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  I+T DNPR EDPE+I   I  GI G  ++   +R EAIR A+ ML   D+L+VAGK
Sbjct: 422 ADEVIITSDNPRDEDPEEILDAIERGITGVHYLRISDRAEAIRRAVLMLKAGDLLLVAGK 481

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE    +  G K    D  II+
Sbjct: 482 GHEKYQEIA-GHKYFFSDQAIIK 503



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 155/375 (41%), Gaps = 53/375 (14%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F+A+ G   DGH FI     +GA   +VS  +  +  S         +V 
Sbjct: 566 DSREVRGGELFIALKGENADGHCFIGTVFEKGASWAMVSRQWYEEQGSVDPPPGKGFIVT 625

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+T   L   A+    +    +LA+ G++GK++    V  +      + F++     +S 
Sbjct: 626 DDTVAGLQQLATIYRHQFSIPVLAIGGSNGKTTTKEMVASVLG----TGFRV----HMSE 677

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-GS-----F 209
             ++N L  P        L+ L  +G T ++V     G++ H  + + L A GS      
Sbjct: 678 GNRNNHLGVP--------LTLLQLRGDTDIAV--VEMGIN-HPGEMVLLAAIGSPTHALL 726

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-------------V 256
           TN+G +H+++         A++ LF+ L      A +  DD                   
Sbjct: 727 TNIGHEHLEFLVDLDGVEAAEIPLFDYLRQSGGIAFVNMDDPRISAAASGMAGSVPYGMA 786

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +  H+   R +SV   G    L  +C+I   + VT++  GK             V NA+
Sbjct: 787 TRSEHSCWARDISVNSAGALSFL--LCSIAGSEPVTLNFTGK-----------HNVMNAI 833

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            AA +    G+    + E LE+L   PG       ++ G RI  D Y   S+S+   +  
Sbjct: 834 AAATVGHYFGLSLCQIREGLERLTPAPGWKRLEVLDACGVRILNDTYNANSDSMRKAIDA 893

Query: 376 IRTIT-SGRIIVVFG 389
           +  +  +G+ + V G
Sbjct: 894 LCDLPGAGKRVAVLG 908


>gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
 gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
          Length = 491

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD  S   M++A  A      +  Q  F              + I+  G  FD  
Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSAFDLR 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      D++++AGKGHE 
Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKGHED 463

Query: 472 VHIV 475
             ++
Sbjct: 464 YQVI 467


>gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 494

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 169/478 (35%), Positives = 248/478 (51%), Gaps = 51/478 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I     DSR +  G I++ I G   DGH F   A+  GA A+ V     L         +
Sbjct: 30  ITGAKMDSRKVIPGDIYICIPGFHADGHDFAEAAVKAGAAALAVERYLPL---------D 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P + V N R+     A+ ++G +P     ++ VTGT+GK++V   ++ I Q +G  +  
Sbjct: 81  VPQIKVRNIRQTAGKIAAAVFG-YPSQKLELIGVTGTNGKTTVTHLIESIAQENGKKTGL 139

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   S I +     + TTP    +   L+ +  +GV    +E SSH LD  R+ G +  
Sbjct: 140 IGTLGSRIGNRGIPGQHTTPESAEIQDLLNQMVEEGVNTAVMEVSSHALDLGRIVGCRFD 199

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHN 262
              FTNL +DH+DYHQ+ + Y  AK  LF ++   E P   AI+ ADD  S+ +M +   
Sbjct: 200 TAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQM-SGEKPGQKAILNADDQASEYLMTKTS- 257

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVY 313
             CRV++ G + K        A +  +++ +S +G  FD +         F  PG+F VY
Sbjct: 258 --CRVVTYGIEKK--------ADYQAEKIVLSDKGIYFDLVYKKIREKVFFATPGKFSVY 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370
           N L A    +  G +S  V + L  L  VPGRF+ +    R G+   + +DYAHT + LE
Sbjct: 308 NVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSI----RKGQPFLVIIDYAHTPDGLE 363

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L   R IT  R+I VFGCGGDRD+GKRP+M + A   +D  IVT DNPR+EDPEKI  
Sbjct: 364 NVLSTAREITGRRLITVFGCGGDRDRGKRPLMAEAASGWSDYVIVTSDNPRTEDPEKIIG 423

Query: 431 EIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +I+ G+ G ++     +R  AI  A  M  + D +++AGKGHE   I+  G  K+  D
Sbjct: 424 DILPGM-GKVDYEVIVDRRRAIHRACTMAGEGDTVLIAGKGHEDYQII--GTSKIHFD 478


>gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 512

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/484 (34%), Positives = 254/484 (52%), Gaps = 31/484 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRS 88
           ++ +SSDSR +  G +F+A+ G   DGH FI  A+ +GA A++       L D S     
Sbjct: 25  VSMISSDSRDVLPGALFIAVRGYSADGHRFIKSAVERGAAAVLCEEIPPVLPDAS----- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L V++ R+ L+L A + YG   +  +++ VTGT+GK++ A  +  +    G+ +  
Sbjct: 80  -LPYLRVEDARQALALAARQFYGFASDALHVIGVTGTNGKTTTARLITAMLNACGIRTGY 138

Query: 147 IGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           IG  + + +F +       TTP    L      +   G +   +E SSH L   R+ GI 
Sbjct: 139 IG--TNLCTFGEQQIPLDRTTPEAHILHALFRRMLDSGCSVAVMEVSSHALVLQRVYGIT 196

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A  FTNL  +H+D+H+T Q Y  AK +LFE+L P +  A+I +DD  ++E++ + +  
Sbjct: 197 FHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQLSP-QGFAVINSDDPRAEEMVSKINPE 255

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314
                ++   G+           + + +  S+        FP         LPG++ V N
Sbjct: 256 KRFCCTLDQTGRVA--GDASRRFSAELIDQSIASATIRLCFPDAQQTISTVLPGQYNVMN 313

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L AA +   +G+ S +V   L+ L  V GR E +    R   ++VDYAHT ++L   L 
Sbjct: 314 LLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIMDRRRKEFVFVDYAHTPDALFKALS 373

Query: 375 NIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +  + S   R+IVVFGCGG+RD+ KRP MG+IA++ AD+ I+T DNPR EDPE I  EI
Sbjct: 374 TLNALKSPASRLIVVFGCGGNRDRLKRPEMGRIAVENADLVILTSDNPRDEDPEMIIDEI 433

Query: 433 IHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
             GI     K   +R +AIRTA+ +L   DVL+VAGKGHE     T GEK    D + +R
Sbjct: 434 EKGIRVKNHKRITDRAQAIRTAVALLQPGDVLLVAGKGHEQYQ-ETAGEKSFFSDQETLR 492

Query: 491 EILG 494
             L 
Sbjct: 493 NALA 496


>gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 489

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 241/462 (52%), Gaps = 31/462 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR I  G IFVA+ G   DGH FI  AI +GA+ I+VS     Q            
Sbjct: 34  MEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQ-------KGIGY 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145
           +++ N RK L + AS  YG   +NI  L VTGT+GK++    ++Q+       R G   +
Sbjct: 87  VLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEY 146

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG     +        TTP  + L + +     +G+ ++ +E SSH L+  R++ ++  
Sbjct: 147 KIGKEVIEAPN------TTPESLDLVRMIKKAYEEGLEYIIMEVSSHALELGRVNMLEFD 200

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL  DH+DYH+T + YF AK +LF +L  K +  I+  DD Y K + +  H    
Sbjct: 201 GAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-AIKILNVDDEYGKRLQEEFHGISY 259

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G QGK +  +       K++V +S+ GK  +    + G F +YN L +  L   +
Sbjct: 260 GTKQAGVQGKILGFE-----GGKERVELSLFGKKKECKIQILGGFNLYNLLGSIALVKEL 314

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    +   +E L   PGRFE V    +   + +DYAHT ++LE IL+ I+ I + +II
Sbjct: 315 GMSEEEIFAKVELLQGAPGRFETVDC-GQDYMVVIDYAHTGDALENILQAIQEIKTKKII 373

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443
            +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+PE I  E+  G      I   
Sbjct: 374 TIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEEVKGGFTKENHICVL 433

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            R EAI   I    K D++++AGKGHET  I+  G KK   D
Sbjct: 434 ERAEAIAEGIRRAEKGDIVLIAGKGHETYQIL--GRKKYHFD 473


>gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 497

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/495 (31%), Positives = 258/495 (52%), Gaps = 55/495 (11%)

Query: 1   MKLQDLIYKDFPELI--NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL  LI     EL+  N + +  +  ++ ++N+V S+SR ++ G +F+ + G   D HL
Sbjct: 1   MKLSHLI-----ELLGNNLVEVTNLNGKDPEVNDVVSNSRLLKPGNLFICLQGTSFDSHL 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPE 115
             P+   +GA A++             +  + PI+ V ++R    L  + LY     HP 
Sbjct: 56  LAPELQERGAAALIAEKKID-------VDLDIPIIYVKSSR----LAEAHLYMEINDHPY 104

Query: 116 NILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDN-RLTTPSPIYL 170
             L    VTGT+GK++V + +  I +     S  +G   + I  +   N + TTP P  L
Sbjct: 105 KKLTTIGVTGTNGKTTVTTLINHILETFQRKSALVGTVKNVIGDYVSTNPKNTTPGPATL 164

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           AK +     + + +  +E SSHGL  HR+DG++      TN+ RDH+D+H + + Y+  K
Sbjct: 165 AKYMKMAVEKNLEYFVMEVSSHGLAMHRVDGMRFDVAVLTNVTRDHLDFHASFEDYYRTK 224

Query: 231 MRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           +R+F  L P    A++ +D+    ++ + R      ++++ G+  +        +    +
Sbjct: 225 LRIFNLLKPV-GKAVVNSDNVNIGDIKLPRD-----KIITYGFGNE--------SDFRME 270

Query: 290 QVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            + IS  G  F    P          L GE   YN         ++  D+  +LE +   
Sbjct: 271 NLEISRTGMYFTVETPFGSKHKVYTRLVGEHNAYNVTATIATMESLNYDTEHILEAISTF 330

Query: 340 HVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             VPGRFEFV   ++ G  + VD+AHT ++LE +LK  + ++ GRII+VFG GGD D+GK
Sbjct: 331 SGVPGRFEFVEEATKYGFDVLVDFAHTPDALEKLLKTAKKLSEGRIIIVFGAGGDADKGK 390

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM 455
           RP+MG+IA   AD+ I+T D+P+ EDPE+I  +I  GI     ++   +R EAI  A+ +
Sbjct: 391 RPLMGEIASRFADVVILTSDDPKKEDPEEILNDIEAGISKTKPYLVIPDRREAISVALTL 450

Query: 456 LNKQDVLVVAGKGHE 470
            N+QD +++AG+GHE
Sbjct: 451 ANRQDTVLIAGRGHE 465


>gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
 gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
          Length = 483

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 167/495 (33%), Positives = 261/495 (52%), Gaps = 32/495 (6%)

Query: 13  ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +   Q   + +I  V+ DSR I+AG +FVAI G   DGH FIP+AI  GA A+
Sbjct: 5   ELLKNVEVLNTQGDVDVEITGVNIDSRRIEAGHLFVAIPGTVTDGHKFIPKAIELGATAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +       QD   T       + V +T   +   A++ YG     +  + VTGT+GK+++
Sbjct: 65  LCEKLPEEQDPKVTF------VQVASTESCVGEVATQFYGDPSRKLKLVGVTGTNGKTTI 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185
           A+ +  + ++ G    + G  ST+ ++ +D  +    TTP PI L + L+ +   G  + 
Sbjct: 119 ATLLYNMFRKFG---HKCGLLSTVCNYIEDEAIPADHTTPDPIELNRLLAQMVDAGCEYA 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y +AK   F+  L K++ AI
Sbjct: 176 FMECSSHAIAQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRDAKKAFFDG-LEKDAFAI 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             ADD  +  VM +   A  +  S      F    K+   H  + + + + GK+    F 
Sbjct: 235 TNADDK-NGMVMVQNCKANVKTYSTRTMADF--KAKIIECHF-EGMYLDINGKEVGVQF- 289

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F V N L   G  + +G     +L  +  L  V GR E + +   G    VDYAHT
Sbjct: 290 -IGKFNVSNLLAVYGAAVMLGKKPEDILLIMSTLKSVNGRLEPIHS-PEGYTAIVDYAHT 347

Query: 366 SNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            ++LE +L  I  + +  G++I V G GG+RD+GKRPIM + A+  +D  I+T DNPR E
Sbjct: 348 PDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPIMAQEAVKQSDKVIITSDNPRFE 407

Query: 424 DPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           +P+ I  +++ G+        +   +R EAIRTA  +  K DV+++AGKGHE    +  G
Sbjct: 408 EPQDIINDMLAGLDQKQMKKVVSIVDRREAIRTACMLAEKGDVILIAGKGHEDYQEI-KG 466

Query: 479 EKKMSVDCDIIREIL 493
            K    D ++++EI 
Sbjct: 467 VKHHFDDKEVVKEIF 481


>gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens FZB42]
 gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42]
          Length = 490

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 252/491 (51%), Gaps = 52/491 (10%)

Query: 13  ELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           +L+  L   P+Q  + +  I  +  DSR ++ G +FV I G   DGH F  +A   GA A
Sbjct: 5   KLLTYLMAEPVQNDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAA 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           IV      +         + P+++V  +++ LS+ +   YG+  + +  + +TGT+GK+S
Sbjct: 65  IVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTS 115

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
               V +I +++G  +  IG T  I     +F   N  TTP  + L K    ++ + V  
Sbjct: 116 TTHMVDEIFKKAGRQTGLIG-TMYIKIGDETFPVKN--TTPESVTLQKTFKKMNDEHVDT 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
             +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF +L      E
Sbjct: 173 AIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHE 232

Query: 242 SP--AIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  A++ ADD  S   E +  AH     +L+ G +     + K        Q+ IS +G
Sbjct: 233 KPKRAVLNADDKASAYFEKVTAAH-----ILTYGIENDADVMAK--------QIEISAQG 279

Query: 298 KDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             F+ + P         L G F VYN L AA   IA G+    +   LE+L  V GRFE 
Sbjct: 280 TSFELVTPKGTKQITVSLVGRFNVYNVLAAAATGIAAGLPFDTITSALEELQGVRGRFEL 339

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  N +   + VDYAHT +SLE +L   + +T G++ VV GCGGDRD+ KRP M +IA+ 
Sbjct: 340 VNHN-QPFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVR 398

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +AD  I T DNPRSEDP  I  ++  G+ G  +    NR +AI  AI    K DV+++AG
Sbjct: 399 IADEPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAG 458

Query: 467 KGHETVHIVTN 477
           KGHET   + N
Sbjct: 459 KGHETYQQIGN 469


>gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
 gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
          Length = 482

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 159/497 (31%), Positives = 258/497 (51%), Gaps = 46/497 (9%)

Query: 19  SIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           +I P+Q     E+ I  V+ DSR + AG +F+A+ G + DGH +IP AI QGA A++   
Sbjct: 9   AIQPVQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEQGAIAVLC-- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
               +D       +   + V ++   +   A+  YG       ++ VTGT+GK+++A+ +
Sbjct: 67  ----EDMPEEPNPDITYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTIATLL 122

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189
               +  G   +++G  ST+ ++  D  +    TTP P+ L + L  ++  G  +  +E 
Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDQPVPTEHTTPDPVTLNRLLGEMADSGCKYAFMEV 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ +PK + ++   D
Sbjct: 180 SSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKSAFSLTNLD 238

Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303
           D      ++    R +    R LS  ++GK +  H + +    N  ++ +   GK     
Sbjct: 239 DKNGLVMTQNTRSRVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK----- 292

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                 F   N L   G  + +G     VL  L  LH V GRF+ +  + +G    VDYA
Sbjct: 293 ------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFDSI-RSPKGITAIVDYA 345

Query: 364 HTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++L  +L  I  + +GR  +I V G GG+RD+GKRPIM K +  L+D  I+T DNPR
Sbjct: 346 HTPDALVNVLNAIHDVLAGRGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPR 405

Query: 422 SEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            E+P+ I  +++ G     +   I   +R  AI+TA  +    DV++VAGKGHE    + 
Sbjct: 406 FEEPQDIINDMLAGLDKDDLEKTISITDRKYAIKTACLLAQPGDVILVAGKGHENYQEI- 464

Query: 477 NGEKKMSVDCDIIREIL 493
            G K    D ++++EI+
Sbjct: 465 KGVKHHFDDKEVLKEIM 481


>gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 487

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 242/469 (51%), Gaps = 18/469 (3%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           IFP    +  I E++ DSR+++AG +F+A+ G + DG   I  A+ +GA A+    AY +
Sbjct: 8   IFPHAGHDLLIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAV----AYEV 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQIC 137
           +  +    +  P++ V      LS  A R YG+  H  N++ VTGT+GK+SV   V Q  
Sbjct: 64  EGATVLPITEVPLIPVKGLAAQLSDIAGRFYGEPSHHLNLIGVTGTNGKTSVTQLVAQAL 123

Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G   S      Q    TTP+PI +   L  L   G   V++E SSHGLDQ
Sbjct: 124 DLLGQHCGIVGTLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  +       TNL RDH+DYH T +AY  AK +LF          ++  DD + +++
Sbjct: 184 GRVTALAFDVAVMTNLSRDHLDYHGTMEAYAEAKAKLFA--WNDLKCRVVNLDDDFGRQL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 +     S+     ++++++     +  + T+     +      L G F + N L
Sbjct: 242 AAEKRESRLITYSLLDSSAYLYVREAQFDDHGVRATLVTPQGEHHLRSTLLGRFNLSNVL 301

Query: 317 VAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            A G  +  G+D AL  +L+ L KL    GR + +G  ++   + VDYAHT ++LE +L 
Sbjct: 302 AAVGALL--GLDYALDEILKVLPKLEGPAGRMQRLGGGTQP-LVVVDYAHTPDALEKVLT 358

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    G+++ +FGCGGDRD+GKRP+M ++   LAD  +VTDDNPR+EDP  I  +I  
Sbjct: 359 ALRPHVKGQLLCLFGCGGDRDRGKRPLMAEVVERLADRVLVTDDNPRTEDPAVIFDDIRA 418

Query: 435 G---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           G   +        R +AI   I   +  DV+V+AGKGHE    + NGE+
Sbjct: 419 GFTAVDNVTFVAGRGQAIAQLIAGASADDVIVLAGKGHEDYQEI-NGER 466


>gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
 gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
          Length = 487

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 252/477 (52%), Gaps = 31/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +V  DSR      +FVAI G + DGH +I +A+AQGA AI+       ++    I + 
Sbjct: 24  ITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEKAVAQGALAIIC------EEMPQQIVNG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V +T   L+  AS  YG    N+  + +TGT+GK+++AS + Q+ +++G   ++ 
Sbjct: 78  ITYVKVADTSSALATIASNYYGNPSANLKLIGITGTNGKTTIASLLYQLFKKAG---YKT 134

Query: 148 GPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  ST+     +       TTP  + + K L+ +S+ GV +  +E SSHG+ Q R +G+ 
Sbjct: 135 GLLSTVKIMVDTIEHKATHTTPDSLTINKYLAEMSAAGVEYCFMEVSSHGIHQKRTEGLH 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL  DH+DYH+T   Y + K + F+E LPK + A++  DD     +++     
Sbjct: 195 FEGGIFTNLSHDHLDYHETFAEYRDVKKKFFDE-LPKTAFALVNNDDKNGPVMVQN---- 249

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +   V Y  K     +   + N Q   + ++ +D +    L G F  YN L       
Sbjct: 250 -TKAKKVTYALKSYADYRAQILEN-QLSGLLLKVQDQEVWVKLIGSFNAYNLLAIFAAAE 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382
            + +D    L+ L +L  V GRF++  +      I VDYAHT ++L+ +L+ I  I +  
Sbjct: 308 LLELDQMEALQLLSELESVSGRFQYFISEGNVTAI-VDYAHTPDALKNVLETINDIRTKN 366

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
             +I V G GGDRD  KRP MG IA  L+  AI+T DNPRSE+PE I  +I  G+     
Sbjct: 367 EELITVIGAGGDRDTTKRPKMGNIASALSTKAIITSDNPRSENPEAIIEQIEAGVEPIHY 426

Query: 442 K-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           K      +R +AI+TA ++ N  D++++AGKGHET   + NGE+    D  I++E L
Sbjct: 427 KRILSITDRKQAIKTACQLANAGDIILIAGKGHETYQEI-NGERFDFDDYKIVQETL 482


>gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
 gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
          Length = 483

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 164/478 (34%), Positives = 257/478 (53%), Gaps = 31/478 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I+AG +FVA+ G + DGH FI +AI  GA +++       +D    ++ 
Sbjct: 22  EITGVNIDSRRIKAGHLFVAMKGTQVDGHQFIGKAIELGAISVLC------EDLPEVLQE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V++T   +   A+  YG   H   ++ VTGT+GK+++A+ +  + ++ G    +
Sbjct: 76  GITYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTIATLLYNMFRKFG---HK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L + L+ +   G  +  +E SSH + Q R+ G+
Sbjct: 133 VGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K     FTNL RDH+DYH+T + Y NAK   F+  LPK++ AI  ADD  +  +M +   
Sbjct: 193 KFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDG-LPKDAFAITNADDK-NGMIMVQNTK 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  +  S+     F    ++   H  + + + ++G++    F   G+F V N L   G  
Sbjct: 251 ATVKTYSIRTLADF--RARILECHF-EGMYLEIDGREVGVQF--IGKFNVSNLLAVYGAA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +G     VL  L  LH V GR E + +   G    VDYAHT ++L  +L  I  +  G
Sbjct: 306 IMLGKKPEDVLLVLSTLHSVNGRLEPIHS-PEGFTAIVDYAHTPDALANVLNAIHEVLDG 364

Query: 383 R--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
           +  +I V G GG+RD+GKRP+M + A+  +D  I+T DNPR E+P+ I  +++ G+    
Sbjct: 365 KGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVIITSDNPRFEEPQDIINDMLAGLNEQQ 424

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               I   +R EAIRTA  M  K DV++VAGKGHET   +  G K    D +++ EI 
Sbjct: 425 MRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHETYQEI-KGVKHHFDDKEVLHEIF 481


>gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 487

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G + DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S  +   +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGIKQESRLITYSQLHSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASI 412

Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I  G        FIE   R +AI   I   N  DV+V+AGKGHE
Sbjct: 413 FDDIRPGFAAADKVRFIE--GRGQAIAELIASANADDVVVLAGKGHE 457


>gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
 gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
          Length = 487

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 258/478 (53%), Gaps = 33/478 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++DSR +++G++FVA+ G + DGH  + QA+ QGA A +VS+       +  + S 
Sbjct: 23  VTGIATDSRQVRSGFLFVAVPGRRVDGHAHLEQAVEQGAVAALVSTT------AHPLPSA 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             I  V++T    SL ASRL+G+      ++++TGT+GK+S A+ ++ +   + LS+  +
Sbjct: 77  LTIARVESTPVAASLAASRLHGEPGRRMRVVSITGTNGKTSTAAMLESVI--AALSTAPV 134

Query: 148 GPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G   T       I    +    TTP  + L   L Y++ QG   V +EASS  L QHRLD
Sbjct: 135 GVIGTGGPRVDGIPVPLKTTTPTTPQAVELQPILRYMADQGAGTVVMEASSLALWQHRLD 194

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                 G FTNL  DH+D H T  AY  AK+ LF  +    S A++  DD  S+E+++R 
Sbjct: 195 HAFTDIGVFTNLSPDHLDDHGTMDAYKAAKLLLFSGM---SSDAVVNTDDPVSQEILERM 251

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAA 319
                R  + G         +   +       + V +G+++    P+PG F V NAL A 
Sbjct: 252 ----PRATTFGMDKTADFTARAFEVSATGTRFLLVHDGQEYPAHLPIPGRFNVANALAAV 307

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +C  +G ++   L  LE L  +PGR E +   + G  I VDYAH+++SLE  L+ +R +
Sbjct: 308 AVCHRLGYETKAALHALETLPQIPGRMETL-RRADGTSIVVDYAHSADSLEKTLRTLREV 366

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           +SGR++ VFGCGGDRD  KR  MG +A  L+D  ++T DNPR+EDPE I   +  G+   
Sbjct: 367 SSGRLLTVFGCGGDRDASKRIPMGSLAGHLSDHVVITSDNPRTEDPETIINAVERGVRTT 426

Query: 440 IEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREI 492
               +RI     AI  A+ +    D ++VAGKG ET  ++  GE  +   D  ++RE+
Sbjct: 427 DTPYDRITDRRAAIARALSLAEPGDTVLVAGKGAETYQLI--GEAALPFEDMAVVREL 482


>gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
 gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
          Length = 482

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 160/492 (32%), Positives = 257/492 (52%), Gaps = 55/492 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKL DL+           +I P+Q     + +I  V+ DSR I+AG +F+A+ G + DGH
Sbjct: 1   MKLSDLLK----------AIQPVQITGSTDMEITGVNIDSRLIEAGHLFMAMRGTQTDGH 50

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            +IP AI +GA AI+       +++   +++    + V ++   +   A+  YG      
Sbjct: 51  AYIPAAIEKGAVAILC------EEWPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKM 104

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLA 171
            ++ VTGT+GK+++A+ +    +  G   +++G  ST+ ++  D  +    TTP PI L 
Sbjct: 105 ELVGVTGTNGKTTIATLLYDTFRYFG---YKVGLISTVCNYIDDQPVPTEHTTPDPITLN 161

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + L  ++  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK 
Sbjct: 162 RLLGEMADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK 221

Query: 232 RLFEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAI 285
           + F+E +PK + ++   DD      ++    + +    R LS  ++GK +  H + +   
Sbjct: 222 KFFDE-MPKSAFSLTNLDDRNGLVMTQNTRSKVYTYSLRSLS-DFKGKVLESHFEGMLLD 279

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            N  ++ +   GK           F   N L   G  + +G     VL  L  LH V GR
Sbjct: 280 FNNHELAVRFIGK-----------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGR 328

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMG 403
           F+ +  + +G    VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM 
Sbjct: 329 FDAI-RSPKGYTAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMA 387

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNK 458
           K +  L+D  I+T DNPR E+P+ I  +++ G     I   I   +R EAI+TA  +   
Sbjct: 388 KESARLSDRVIITADNPRFEEPQDIINDMLAGLDKDDIQKTISIADRREAIKTACMLAQP 447

Query: 459 QDVLVVAGKGHE 470
            DV++VAGKGHE
Sbjct: 448 GDVILVAGKGHE 459


>gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 479

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 164/465 (35%), Positives = 244/465 (52%), Gaps = 37/465 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR I  G IFVA+ G   DGH FI  AI +GA+ I+VS     Q            
Sbjct: 24  MEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQ-------KGIGY 76

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145
           +++ N RK L + AS  YG   +NI  L VTGT+GK++    ++Q+       R G   +
Sbjct: 77  VLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEY 136

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG     +        TTP  + L + +     +G+ ++ +E SSH L+  R++ ++  
Sbjct: 137 KIGKEVIEAPN------TTPESLDLVRMIKKAYEEGLEYIIMEVSSHALELGRVNMLEFD 190

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL  DH+DYH+T + YF AK +LF +L  K +  I+  DD Y K + +  H    
Sbjct: 191 GAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-AIKILNVDDEYGKRLQEEFHGISY 249

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G QGK +  +       K++V +S+ GK  +    + G F +YN L +  L   +
Sbjct: 250 GTKQAGVQGKILGFE-----GGKERVELSLFGKKKECKIQILGGFNLYNLLGSIALVKEL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    +   +E L   PGRFE V    +   + +DYAHT ++LE IL+ I+ I + +II
Sbjct: 305 GMSEEEIFAKVELLQGAPGRFETVDC-GQDYMVVIDYAHTGDALENILQAIQEIKTKKII 363

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN- 444
            +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+PE I  E+     GF ++ + 
Sbjct: 364 TIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEEV---KGGFTKENHI 420

Query: 445 ----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               R EAI   I    K D++++AGKGHET  I+  G KK   D
Sbjct: 421 CVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQIL--GRKKYHFD 463


>gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 487

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 165/468 (35%), Positives = 239/468 (51%), Gaps = 25/468 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +  AL+ L   G   V++E SS
Sbjct: 119 VAQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD 
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNI 412

Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I    PGF+          R +AI   I      DV+V+AGKGHE
Sbjct: 413 FDDI---RPGFVTADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHE 457


>gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
 gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
          Length = 519

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 245/472 (51%), Gaps = 19/472 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           RER+I+ +S DSR +  G +F A  G ++ GH +I  A+ QGA AIV      +     T
Sbjct: 36  RERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGAAVNQGAAAIVYDPVIPVSPVIQT 95

Query: 86  IRS--NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
                N P++ + +    L + A+R Y +      +L VTGT+GK+SV+ F+ Q   R  
Sbjct: 96  QLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVLGVTGTNGKTSVSHFLAQALHRQE 155

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +    IG     +    Q + LTTP  I + + L+ + +    +  +E SSH L Q R+ 
Sbjct: 156 VPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAMVASKARYAVLEVSSHALGQGRVS 215

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+      FTNL R+H+DYH     Y  AK RLF +  P    A+I  DDA  +  +   
Sbjct: 216 GVAFNIAIFTNLSREHLDYHGDMARYEAAKFRLFNQ--PGLRHAVINGDDAAGRAFLA-- 271

Query: 261 HNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            N    V ++ Y        +H  K+    +   +TI     +     PL G F  YN L
Sbjct: 272 -NLPPEVKAISYGLMNPQASLHTGKLRCDRHGIAMTIQSAWGEGQLTCPLLGRFNAYNLL 330

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  +A+G+     L+ L ++  V GR E +G       + VDYAHT ++LE +L+++
Sbjct: 331 AALGGLLAVGMPFTEALQRLSQVRAVVGRMESLGGEEGEPLLVVDYAHTPDALEQVLRSL 390

Query: 377 RT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           R      GR+  VFGCGG+RD+GKRP+MG  A  LAD  ++TDDNPR+EDP +I  +I+ 
Sbjct: 391 RAHLGPGGRLWCVFGCGGNRDRGKRPLMGAAAERLADFVMLTDDNPRNEDPIQIIVDILS 450

Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           GI  P  + +  NR EAI  A ++   +D++++AGKGHE    +   ++  S
Sbjct: 451 GIDDPDRVYQFRNRSEAIIRATQLAEPEDIVLIAGKGHEEYQQIGAEQRPFS 502


>gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 490

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 165/470 (35%), Positives = 237/470 (50%), Gaps = 31/470 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+V  +     D S   
Sbjct: 14  ERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVE 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q + +    
Sbjct: 74  MHGVPVIYLRNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWAQM---- 128

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R
Sbjct: 129 LGETSAVMGTVGNGLLGHVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNR 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  ++
Sbjct: 189 VAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLE 246

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   A    +     VG+ G ++   +V    N   +       +      L G F V N
Sbjct: 247 QLPQAVAVSMENNIPVGWNGPWLSATQVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSN 306

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMIL 373
            LVA    +++G     +L     L  V GR E    N+ G   + VDYAHT ++LE  L
Sbjct: 307 LLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF--NALGKPTVVVDYAHTPDALEKAL 364

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
              R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+
Sbjct: 365 AAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIIADIL 424

Query: 434 HGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G+   ++ G+      R EA+ +AI      DV+++AGKGHE   +V N
Sbjct: 425 SGL---LDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGN 471


>gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 487

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 162/467 (34%), Positives = 245/467 (52%), Gaps = 42/467 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++  DSR +    +F+ I G K  G L+I +AI +GA AI+     +++         
Sbjct: 23  IEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQRGAVAILSEKEIAIE--------G 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           T  + V+N+RK L+  ASR Y K P N L    VTGT+GK+S+   V+ I    G  +  
Sbjct: 75  TTTIKVENSRKALAAVASRFY-KFPTNTLKLVGVTGTNGKTSITYMVKSIL---GYYNIN 130

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TIS++  +  +    TTP  + L K L+ +  Q V    +E SSH L+  R+D  
Sbjct: 131 VGLIGTISNWIGNKEIEAVRTTPESLELQKILNEMVEQKVDTCVMEVSSHALELGRVDHT 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G FTNL  +H+D+H+    Y NAK +LF          II  DD + K + +    
Sbjct: 191 KFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLF---YKTTLCNIINVDDIHGKMIAEELKE 247

Query: 263 AGCRVLSVGYQGKF--------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
               +++ G   +         I+LK V       Q+ +  + K+F     +PG F VYN
Sbjct: 248 EQIPLITFGMNQQADVYATDLKINLKGVSF-----QLHMGQDSKEFHV--KIPGLFTVYN 300

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ +  +C  +G+    +   LE +  VPGRFE V    R   I +DYAHT ++LE IL 
Sbjct: 301 AMPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEIQRNSVI-IDYAHTPDALENILI 359

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           + R     RII VFGCGGDRD+ KR IMG+I+   +D +I+T DNPR+E+P KI   I  
Sbjct: 360 STRKFAPKRIITVFGCGGDRDKTKRRIMGEISGKYSDYSIITSDNPRTEEPLKIIEMIED 419

Query: 435 GIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           GI    ++     +R  AI  A+++  ++D++++AGKGHE   ++ N
Sbjct: 420 GIKQVTDQYKIMIDRRCAIEYAMKIAEEKDIIILAGKGHEKTQVIGN 466


>gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Legionella longbeachae NSW150]
          Length = 483

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 176/508 (34%), Positives = 258/508 (50%), Gaps = 59/508 (11%)

Query: 17  QLSIFPMQWRERKINE-----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +LS     W ++ I +     + +DSR I  G +F+A  G   DG LFI  A++ GA A+
Sbjct: 2   KLSQLLKPWMKQSIMDCLITGLENDSRRIHPGDLFIAYAGAAADGRLFIDNAVSSGAVAV 61

Query: 72  VVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGK 126
               AY   DF  +  +  + P + V      L   A + Y  +P    NI  VTGT+GK
Sbjct: 62  ----AYDPADFPLNCVLPESVPCIPVPELSTQLPNIAKQFY-DNPACFLNITGVTGTNGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RL---TTPSPIYLAKALSYLSS 179
           +++A  + Q     G  +  IG      +  Q N    RL   TTP  + L K L    S
Sbjct: 117 TTIAYQLAQAHHLLGQKAAYIG------TIGQGNVNELRLVDNTTPDSLCLQKLLHQYKS 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q +  V +E SSH L QHR+D ++     FTNL  DH+DYH + + Y  AK  LF     
Sbjct: 171 QDMRQVCMEVSSHALAQHRVDALEFNQAIFTNLTLDHLDYHHSMENYARAKSLLFA---- 226

Query: 240 KES--PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +ES   AII  DDAY K +M  A     + L+ G     IH  + C +  K   ++ + G
Sbjct: 227 RESLEWAIINQDDAYHK-IMAAAIKPQVKKLTYG-----IH--QDCDVRAKNW-SMDIYG 277

Query: 298 KDFDFLFPLP---------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            + +   P           G+F +YN+L      +A       V++ + +L   PGR E 
Sbjct: 278 TEIEVHSPWGKHHIKIKSLGQFNIYNSLAIFSSLLAANYIPEQVVDVMAQLKAAPGRMEI 337

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V   +    + VDYAHT ++LE  L  +  +  GR+ VVFGCGGDRD+ KRPIMGK+A  
Sbjct: 338 V---AHSPYVLVDYAHTPDALENALMTLNQLKKGRLWVVFGCGGDRDKTKRPIMGKVADK 394

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           LAD  ++T DNPR+E+P+ I  EI  GI      I+  NR EAI  A++  ++ DV+++A
Sbjct: 395 LADEIVITSDNPRTEEPQIIINEISKGIALSTKVIQLVNREEAIAYALDKADENDVILIA 454

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHE+   +   + + S D D++R ++
Sbjct: 455 GKGHESYQQIGTVKHQFS-DQDVVRSLI 481


>gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
 gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
          Length = 516

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 162/474 (34%), Positives = 248/474 (52%), Gaps = 41/474 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +  G +F+A+ G + +G  +I QA+ QGA A+++ +     D     + +
Sbjct: 30  ITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALKQGAAAVLIEAGEETADHG---QLS 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P++ V    +F+S  A   Y  HP     + A+TGT+GK++ A  +  + +  G  +  
Sbjct: 87  VPVIAVPKLSEFVSDIAGSFYA-HPSRQMAVTAITGTNGKTTCAQLLANLFELLGEPAGC 145

Query: 147 IGPTS--TISSFAQDNR---------------LTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +G     T+++ A DN+               LTTP  + + + L+ L   G   V++EA
Sbjct: 146 VGTVGYGTVANSAADNQVAELLPDTEIAASDILTTPDAVAMQRILAELRDAGARRVAIEA 205

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL Q R+ G+++    FTNL RDH+DYH    +Y  AK RLF   +     A+I  D
Sbjct: 206 SSHGLVQRRIAGLRIDTAIFTNLSRDHLDYHGDLNSYAAAKSRLFA--MSGLKHAVINLD 263

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKV---CAIHNKQQVTISVEGKDFDF 302
           D   + ++    N    V  + Y        IH  ++    +  + + VT    G+    
Sbjct: 264 DNVGRLILA---NLDPAVDGITYSFENHTADIHCDRIELGASTLSAELVTPWGRGR---L 317

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G+F + N L   G     G     +L    KL  VPGR E V  ++R   + VDY
Sbjct: 318 TSPLLGKFNLANLLAVIGAAGMQGFKLDDILHAAAKLKAVPGRMEIVDPSARP-LVVVDY 376

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++L+  L+ +R   SG+++VVFGCGGDRD+GKR  MG++A  LAD+ +VT DNPRS
Sbjct: 377 AHTPDALDKALRALRLQCSGKLVVVFGCGGDRDRGKRAEMGRVADQLADLVVVTSDNPRS 436

Query: 423 EDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           E PEKI  +++ GI    +   +R +AIR AI      D++++AGKGHE   IV
Sbjct: 437 ESPEKIIDQVLLGISRKVLAVADRRDAIRAAINAAAVDDIVLIAGKGHEAYQIV 490


>gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 496

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 163/469 (34%), Positives = 234/469 (49%), Gaps = 29/469 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+V  +     D S   
Sbjct: 19  ERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q + +    
Sbjct: 79  MHGVPVIYLRNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWAKM---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R
Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + 
Sbjct: 194 VAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLG 251

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   A    +     VG+ G ++   +V    N   +       +      L G F V N
Sbjct: 252 QLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLESRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +++G     +L     L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALV 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ 
Sbjct: 371 AARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILS 430

Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+   ++ G+      R EA+ +AI      DV+++AGKGHE   +V N
Sbjct: 431 GL---LDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGN 476


>gi|333011473|gb|EGK30887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-272]
 gi|333021716|gb|EGK40965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-227]
          Length = 495

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 252/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T +    + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAAGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
 gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
          Length = 532

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 160/512 (31%), Positives = 253/512 (49%), Gaps = 40/512 (7%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      +  I+ +  DSR + +G +FV  +G   DGH F+PQA  QGA 
Sbjct: 5   ELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQGAV 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
            IV +    + +      S   +++V +T   LS  A   YG+  E+  ++ +TGT+GK+
Sbjct: 65  VIVATKEVEIGE------SVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           + +  ++ I +  GL +  IG  S        QD   TTP  +YL K ++ +        
Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPA 244
            +E SSH L Q R   I      FTNL RDH+DYH+ + +Y  AK +LF  ++ P     
Sbjct: 179 VMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRK 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DD  +   +    N    V++ G +    +H   +     +  V +     + +  
Sbjct: 239 VVNIDDPNAGYFVSLG-NPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEIS 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   VYN L A  + IA+      ++  +E++  VPGR E V    +   + VDYA
Sbjct: 298 SGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV-DEEQPFAVIVDYA 356

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L  +L  +R     RII V GCGGDRD+GKRP+M KIA   +++ I T DNPRSE
Sbjct: 357 HTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIFTSDNPRSE 416

Query: 424 DPEKIRAEIIHGIPGFIEK---------------GNRIE-------AIRTAIEMLNKQDV 461
           DP +I  +++ G+   +++               GNR+        A+R A+ M  + D 
Sbjct: 417 DPLEILDDMLAGVGWSMDEYLKCGERSYYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDA 476

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +V+AGKGHE   I+   E+K   D +  RE L
Sbjct: 477 VVIAGKGHEKYQIIGK-ERKYHDDREECREAL 507


>gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
 gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
          Length = 491

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 253/477 (53%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       ++  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  D  
Sbjct: 237 VLNSDDPVTEEYMR---STAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +   +G +  + GCGGDRD+ KRP+M  +A++ A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  ++I    G  +    +R EAIR AI     +D++++AGKGHET  I+
Sbjct: 410 RSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHETYQII 466


>gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
 gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
          Length = 491

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 250/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  + +
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVM 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 487

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 166/467 (35%), Positives = 238/467 (50%), Gaps = 23/467 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASI 412

Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I  G        FIE   R +AI   I   N  DV+V+AGKGHE
Sbjct: 413 FDDIRPGFAAADKVRFIE--GRGQAIAELIASANADDVVVLAGKGHE 457


>gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
 gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
          Length = 483

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 252/481 (52%), Gaps = 47/481 (9%)

Query: 14  LINQL--SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           L+N+L  +I P+Q       +I  ++ DSR ++AG +F+A+ G + DGH +IP AI++GA
Sbjct: 2   LLNELLKAIQPVQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYIPAAISKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            AI+       +D           + V ++   +   A+  YG     +  + VTGT+GK
Sbjct: 62  TAILC------EDMPEKPVEGITYIQVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           +++A+ +    +  G   +++G  ST+ ++  D  +    TTP PI L + L  ++ +G 
Sbjct: 116 TTIATLLYNTFRYFG---YKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGC 172

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ LPK +
Sbjct: 173 KYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNA 231

Query: 243 PAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVE 296
            ++   DD      ++    + +    R LS  ++G+ +  H + +    N  ++ +   
Sbjct: 232 FSLTNLDDKNGLVMTQNTRSKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFI 290

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK           F   N L   G  + +G     VL  L  LH V GRF+ V +   G 
Sbjct: 291 GK-----------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSKD-GV 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I
Sbjct: 339 TAIVDYAHTPDALTNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV+++AGKGH
Sbjct: 399 ITSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILIAGKGH 458

Query: 470 E 470
           E
Sbjct: 459 E 459


>gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
 gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
          Length = 491

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 253/477 (53%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       ++  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  D  
Sbjct: 237 VLNSDDPVTEEYMR---STAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +   +G +  + GCGGDRD+ KRP+M  +A++ A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  ++I    G  +    +R EAIR AI     +D++++AGKGHET  I+
Sbjct: 410 RSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHETYQII 466


>gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 476

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 158/502 (31%), Positives = 251/502 (50%), Gaps = 50/502 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +NQ+++  +    R    + + S  +  G +FVA+ G + DG  FI  A+A+GA  +V  
Sbjct: 1   MNQMNLQNVLEMLRSGTGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGARVVVHK 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
              ++   +         L V N  + L + A    G       I+ VTGT+GK++ A  
Sbjct: 61  EGVAVAPAA-----GVSTLAVPNPAQTLGVLARAACGTESRLPRIVGVTGTNGKTTTAHL 115

Query: 133 VQQICQRSGLSSFQIG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  +   +GL +  IG      P + +++      +TTP  + L   +  +   GV  + 
Sbjct: 116 IHFLLSANGLMTGLIGTVHCSWPGAKVAAT-----MTTPDCLSLHGIIGRMVRDGVEDLV 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R  G+ +  G F+NL +DH+DYH   + YF AK RLF +   + +  ++
Sbjct: 171 MEVSSHALDQERTAGLPMAVGVFSNLTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLV 230

Query: 247 YADDAYSKEV-MKRAHNAG-----------CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             DD Y + + M R    G           CR+L  G +G                + IS
Sbjct: 231 NVDDEYGRRLKMMRPDLLGFGLDSEDAELRCRILGAGTEG--------------MTLGIS 276

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G  ++    L G    YN L A G  + +G+ +A     L +    PGR E V  N+R
Sbjct: 277 HDGNAWELRTSLVGRHNAYNLLSAVGAGLLLGLTAAQC-ACLSQALGAPGRLERV-PNTR 334

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I++DYAHT ++LE +   ++++   R+I VFGCGGDRD  KRP+MG      AD+A+
Sbjct: 335 ELNIFIDYAHTPDALEKVSVALKSMGFKRLITVFGCGGDRDASKRPLMGAAVARHADVAV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+EDPE I  +I  G+ G    + + +R +AI  A++ +   D L++AGKGHE 
Sbjct: 395 VTSDNPRTEDPESILDQIEPGLAGARLVLREVDRRKAIALAVQSMQPGDALLIAGKGHED 454

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             ++   EK+   D +++RE L
Sbjct: 455 YQVIGT-EKRHFSDFEVVRECL 475


>gi|300690336|ref|YP_003751331.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
 gi|299077396|emb|CBJ50021.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
          Length = 514

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 241/486 (49%), Gaps = 34/486 (6%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++AG +FVA ++GN     DG   IPQAI  GA A++  +   +    A +R
Sbjct: 32  DLTSDTRKLKAGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPLR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               IL VD+  +     A++ Y   G     ++ VTGT+GK+S + ++ Q   R G   
Sbjct: 92  ----ILPVDDLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +G   T  + +       TTP  I L  +L+ L   G   V++E SSHGL+Q R DG 
Sbjct: 148 AVVGTLGTGFVDALVATG-FTTPDAIQLQHSLAELHRAGARAVAMEVSSHGLEQGRADGT 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +     FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    ++     
Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLT-GLR 263

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313
           AG   +  G  G+    +          V +   G  FD            P+ G F V 
Sbjct: 264 AGIEAIEYGIDGEAAAQRGAGHWLRATNVRVHRTGTTFDIDGSFGRATVHSPMVGLFNVS 323

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L   G+ +  G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L
Sbjct: 324 NQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + +  IT   +GR+  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP++I  
Sbjct: 383 RALAPITEARAGRLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILD 442

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            I  G+       +  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D +
Sbjct: 443 MIADGMEDPYAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEI-GGRKRPFSDQE 501

Query: 488 IIREIL 493
            +R  L
Sbjct: 502 HVRLAL 507


>gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 487

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 164/468 (35%), Positives = 238/468 (50%), Gaps = 25/468 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD 
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGLKQESRLITYSQLDSAAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNI 412

Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I    PGF+          R +AI   I      DV+V+AGKGHE
Sbjct: 413 FDDI---RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHE 457


>gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 486

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 166/467 (35%), Positives = 238/467 (50%), Gaps = 23/467 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASI 412

Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I  G        FIE   R +AI   I   N  DV+V+AGKGHE
Sbjct: 413 FDDIRPGFAAADKVRFIE--GRGQAIAQLIASANADDVVVLAGKGHE 457


>gi|38234178|ref|NP_939945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200440|emb|CAE50128.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           diphtheriae]
          Length = 513

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 39/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ +  DS  + A  IF A+ G K  G  +  Q  A  A A+ V S +           
Sbjct: 32  EISAIGLDSSQLPADAIFAALPGTKTHGAHYASQGKA--AAALAVLSDHEGTQILVDSGE 89

Query: 89  NTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             PI+ VD+ R+ L + ++ +YG   H   I+ VTGTSGK++ +  +++    +GL    
Sbjct: 90  KRPIIEVDDVRRVLGILSAEIYGHPSHEMTIIGVTGTSGKTTTSYILERGLMAAGLHVGL 149

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG T T I+      +LTTP    L +  S + ++GV+HV +E SSH L   R+ G +  
Sbjct: 150 IGTTGTRINGRKVPTKLTTPEAPTLQQLFSQMKAEGVSHVVMEVSSHALALGRVTGTRFS 209

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAG 264
           A  FTNL +DH+D+H T Q YF AK   F+   P     +++  +D + K + +RA    
Sbjct: 210 AAGFTNLSQDHLDFHPTMQEYFEAKALFFDPASPIHAEKSVVCVNDLWGKNMAERAGADA 269

Query: 265 CRVLS----VGYQGKF----IHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             V +      +Q  +    I +  V A    +H+  Q T        D   PLPG F +
Sbjct: 270 ITVCTEQEAAAHQADYWVSNIDVNPVGAQSFIVHHGAQST--------DVHLPLPGGFNI 321

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLE 370
            N +VA  L  ++G+D+   +  +  +  VPGR E +    RG      VDYAH   ++ 
Sbjct: 322 ANTVVALALAESVGVDTDAFIRGIADV-AVPGRMERI---DRGQEFLAVVDYAHKPAAVA 377

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +++  +R    GRI VV G GGDRD GKRPIMG  A   AD+ IVTDDNPRSEDP KIR 
Sbjct: 378 VVIDTVRDQVPGRIAVVVGAGGDRDSGKRPIMGAEAARRADLVIVTDDNPRSEDPAKIRE 437

Query: 431 EII---HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            ++   HG+ G     E G+R EAIR A++     D ++VAGKGHE   ++ NG
Sbjct: 438 AVLEGAHGVAGSADIREIGDRREAIRIAVQWAQPGDAVIVAGKGHEVGQLI-NG 490


>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa]
 gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 162/508 (31%), Positives = 266/508 (52%), Gaps = 46/508 (9%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      E +I  +  DSR + AG +FV  VG K DGHL++ +A  +GA 
Sbjct: 248 ELLDESKVVPVSVLGDLEVEITGIQDDSRVVSAGDLFVCRVGMKTDGHLYLSEADKRGAV 307

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A+V S    +++          +++V++T   L   A+  Y    +N  ++ +TGT+GK+
Sbjct: 308 AVVASKEVDIEETLGC----KALVIVEDTNAVLPALAAAFYKFPSKNMAVIGITGTNGKT 363

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL----TTPSPIYLAKALSYLSSQGV 182
           + A+ V+ + +  GL   + G  ST++ +   DN+L    T P  I +   ++ +   G 
Sbjct: 364 TTANLVKGMYEAMGL---RTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHNGT 420

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKE 241
             V +EA+S GL   R D +      FTNL RDH+D+H T++ Y NAK +LF  ++ P+ 
Sbjct: 421 EAVVMEATSQGLALGRCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPER 480

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKD 299
              ++  DD  +   + +  N    V++   + K   +H  K      + QV ++     
Sbjct: 481 HRKVVNVDDPNAPFFIAQG-NQEVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHGI 539

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G+  +YN L A  + IA+G     ++  +E++  VPGR E +      G + 
Sbjct: 540 LEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFG-VI 598

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++L  +L ++R +   RII V GCGG+RD+GKRPIM KIA D +D+ I+T DN
Sbjct: 599 VDYAHTPDALSRLLDSVRELRPKRIITVIGCGGERDRGKRPIMTKIATDKSDMTILTSDN 658

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLN 457
           PR EDP  I  +++ G+   +++               G+R+        A+R A+ M  
Sbjct: 659 PRGEDPLDILDDMLAGVGWSMQEYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGE 718

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           + D++VVAGKGHET  I   G+KK   D
Sbjct: 719 EGDMVVVAGKGHETYQI--EGDKKEFFD 744


>gi|124515893|gb|EAY57402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum rubarum]
          Length = 509

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 245/488 (50%), Gaps = 30/488 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-----SLQDFS 83
           K+  +S DSR ++ G +F+   G       F+ +A+ +GA  +V          S    S
Sbjct: 28  KVLSLSDDSRQVENGALFLIRPGEGFRWE-FVDEALDRGASYLVADRKAFPEIDSRPALS 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRS 140
           + IR +  + +V+N  + +   AS  +G  P + L    VTGT+GK++ +   + +C+  
Sbjct: 87  SRIRESAGLSLVENLPRAVGQLASSWWG-FPSSFLKVIGVTGTNGKTTSSFLTRSVCRAG 145

Query: 141 GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           GL    IG     +     +   TTP  I +    +     G+  VS+E SSH LDQ RL
Sbjct: 146 GLPCGLIGTVVFDVGHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEVSSHALDQDRL 205

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVM 257
            G       FTNL RDH+DYH+T +AYF AK +L     P  S   A+++  D Y   + 
Sbjct: 206 AGTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGDEYGARLA 265

Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           K     G RVL+ G      I   +V    +  + T+     +      L G + + N L
Sbjct: 266 KELERDGRRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNIL 325

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G   A+G+    + E +  L  VPGRFE V + + G  + VDYAHT ++L  +L  +
Sbjct: 326 GAVGCGEALGLSMEKIAEGIHSLPGVPGRFERVDSPT-GFSVIVDYAHTDDALSNLLSAV 384

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T G++I VFGCGGDRD+GKRP MG +A  L+D  ++T DNPR+E+PE I  EI    
Sbjct: 385 RPVTRGKVITVFGCGGDRDRGKRPRMGSVAGRLSDFVVLTSDNPRTENPESILDEI---E 441

Query: 437 PGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           PG  E G       +R  AI  AI      D +V+AGKGHE   I+  G++K+  D    
Sbjct: 442 PGLRETGTPYVRVSDRKSAIFEAIRRARPGDAVVIAGKGHENYQIL--GKQKIHFDD--- 496

Query: 490 REILGLIL 497
           REI  L L
Sbjct: 497 REIARLAL 504


>gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 491

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPNESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  ++ L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466


>gi|218698508|ref|YP_002406137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI39]
 gi|218368494|emb|CAR16229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI39]
          Length = 495

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 251/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
 gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
          Length = 485

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 42/462 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +++ DSR +  G +FVA+ G + DGH +I  AI  GA A++       +     +  
Sbjct: 22  EIEQITFDSRQVNKGTLFVAVPGTQSDGHDYIETAIDAGASAVLC------EVLPKMLEE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V+N+ K + + A   YG   +   ++ VTGT+GK+SVA+ + ++ ++ G   ++
Sbjct: 76  EVTYIQVENSAKSMGIAAGNFYGNPSKRLTLVGVTGTNGKTSVATLLFKLFRKLG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ +  +D  +    TTP  I L   L  +  +G   V +E SSH + Q R+ G+
Sbjct: 133 CGLISTVQNQIEDEIIPATHTTPDSITLNALLHEMHQKGCAFVFMEVSSHSVVQGRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260
               G FTN+ +DH+D+H+T   Y  AK   F+ L P  + A+   DD   K +++    
Sbjct: 193 HFSGGIFTNITQDHLDFHKTFDEYIKAKKGFFDAL-PSTAFALTNVDDRNGKVMLQNTKA 251

Query: 261 --HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             H+   + ++  ++GK +     C +   Q     +E    +  F L G+F  YN L  
Sbjct: 252 EKHSYSLKNIA-DFKGKVLD----CGLFGLQ-----MEIDKQEVWFKLIGQFNAYNLLAV 301

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G  + +  +   +L  L +L   PGRFE V ++ +   I VDYAHT ++L+ +L+ I  
Sbjct: 302 YGAAVLLEENPENILTELSQLTPPPGRFEQVISSQQTVGI-VDYAHTPDALKNVLETING 360

Query: 379 ITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +  G  R+I V GCGG+RD+GKRP+M  IA +L+D  I+T DNPR E+PE I  ++  GI
Sbjct: 361 LRQGHERVITVVGCGGNRDKGKRPLMAGIACELSDTVILTSDNPRFEEPEDILKDMEAGI 420

Query: 437 PGFIEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHET 471
           P  I K  R+       EAIR A+ +   +D+++VAGKGHET
Sbjct: 421 P--ITKQKRVQVIVDRREAIRQAVALAGPEDIILVAGKGHET 460


>gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 491

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 250/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI  +   D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGASGNNYEVIIDRKEAIHHAITKVKADDIIIIAGKGHETYQII 466


>gi|152996632|ref|YP_001341467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
 gi|150837556|gb|ABR71532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
          Length = 488

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 236/450 (52%), Gaps = 23/450 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N + +DSR +    +F A+ G   +G  ++   I  G +  VV +   LQ      R + 
Sbjct: 27  NCLETDSRKVDQESVFFALPGVTSNGWDYLNDVIKLGCKVAVVPAELKLQ------RDDI 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-----F 145
            ++ V +  K L       +GK P  ++AVTGT+GKSS+  ++ Q+ +  G SS     F
Sbjct: 81  ELVSVADPVKLLVACLHAFFGKMPSKMVAVTGTNGKSSICFYIAQLAKYIGFSSGLVGTF 140

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +GP   +S   Q    TTP  + + +AL  ++ +GV  V+ EASSH LDQ R++G+   
Sbjct: 141 GVGPLDRLSEAKQ----TTPDLLSMHRALMKMAEEGVDFVAFEASSHALDQGRIEGVPFQ 196

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              F+NL RDH+DYH    +Y  AK RLF       S +I   DD Y+  + + A  + C
Sbjct: 197 TAVFSNLSRDHLDYHGDMNSYALAKRRLFS--FECVSHSIFCLDDGYAGFMAEGAARSSC 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIA 324
              S        ++K++    +  +  +   G D     PL G F V NAL A A L   
Sbjct: 255 HYYSEQDSRADFYVKQLMLEPSGCRFVLCHPGGDTPVFLPLLGCFNVQNALAAFASLWYG 314

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +  D A ++  L  L   PGR + V        + VD+AHT+++LE+ L+ ++  T+GR+
Sbjct: 315 VD-DKATLIRGLSTLTGAPGRMDKVQL-PNAPLVVVDFAHTADALEVALQAVKEHTNGRL 372

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII---HGIPGFIE 441
           I VFGCGGDRD+GKRP+M   A+  AD   +T DNPR+E  E+I ++++   +    F  
Sbjct: 373 ICVFGCGGDRDRGKRPLMMAAAMKNADYVWLTSDNPRTESIEQIFSDVLAQTNKDAAFSF 432

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + +R  AI  AI     +DV+++AGKGHET
Sbjct: 433 ELDRRMAIHQAILSAGPEDVILIAGKGHET 462


>gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa]
          Length = 487

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 235/470 (50%), Gaps = 23/470 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  ++QL  FP   R+  I E++ DS  ++   +F+ + G  +DG   I  A+ +GA A
Sbjct: 1   MPMSLSQL--FPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATA 58

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           +    AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 59  V----AYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPDLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++     +      S+  K      PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREASPTASPTARRSSIAAKQGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHT 365
           G F + N L A G  + +G     +L  L +L    GR + +G    GG+  + VDYAHT
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGG---GGKPLVVVDYAHT 349

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E  
Sbjct: 350 PDALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEAS 409

Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             I A+I  G        F+   +R EAI   I      DV+++AGKGHE
Sbjct: 410 AAIIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457


>gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
 gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
          Length = 482

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 154/474 (32%), Positives = 247/474 (52%), Gaps = 45/474 (9%)

Query: 19  SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           +I P+Q     E+ I  V+ DSR + AG +F+A+ G + DGH +IP AI +GA A++   
Sbjct: 9   AIQPVQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEKGAIAVLC-- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
               +D       +   + V ++   +   A+  YG       ++ VTGT+GK+++A+ +
Sbjct: 67  ----EDMPEETNPDVTYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTIATLL 122

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189
               +  G   +++G  ST+ ++  D  +    TTP PI L + L  ++  G  +  +E 
Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEV 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ +PK + ++   D
Sbjct: 180 SSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNAFSLTNLD 238

Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303
           D      ++    R +    R LS  ++GK +  H + +    N  ++ +   GK     
Sbjct: 239 DKNGLVMTQNTRSRVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK----- 292

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                 F   N L   G  + +G     VL  L  LH V GRF+ +  + +G    VDYA
Sbjct: 293 ------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDSI-RSPKGITAIVDYA 345

Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+T DNPR
Sbjct: 346 HTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPR 405

Query: 422 SEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            E+P+ I  +++ G+        I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 406 FEEPQDIINDMLAGLDKDDLQKTISIADRKEAIKTACMLAQPGDVILVAGKGHE 459


>gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
 gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
          Length = 488

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 161/484 (33%), Positives = 243/484 (50%), Gaps = 40/484 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  GL +  +G       F Q  + + TT S + +  +LS     G    
Sbjct: 119 TISQLLAQWAELLGLRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           I ADD    + + +  +A    ++V     F    KV +    + + I    K  D  F 
Sbjct: 236 INADDEIGYQWLTKLPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287

Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F V N L+     ++ G     +L   + L  V GR E +   ++
Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  I
Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE 
Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466

Query: 472 VHIV 475
             I+
Sbjct: 467 YQII 470


>gi|33598266|ref|NP_885909.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella parapertussis 12822]
 gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella parapertussis]
          Length = 945

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 160/475 (33%), Positives = 245/475 (51%), Gaps = 41/475 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G +FVA  G   DG  F+ QA+A+GA AI+  +     + +    +    L V
Sbjct: 35  DSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYET-----EGAPVAPAGAQALPV 89

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              R  L   A   YG+  ++  ++A+TGT+GK+S   ++ Q+  R G     IG   T+
Sbjct: 90  AQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIG---TL 146

Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +   D +     LTTP  + + + L+ + + G   V++EASS G++Q RLD I++    
Sbjct: 147 GALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAG 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T Q Y  AK  LF+   P    A++ ADD   + ++     A    L
Sbjct: 207 FTNLTRDHLDYHGTMQRYEQAKAALFQ--WPDLQAAVVNADDPAGERLLASLPAA----L 260

Query: 269 SVGY--QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             GY  QG    +H + + A  + Q  T+++   +   +  L G+  + N L+ AG    
Sbjct: 261 KTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSK 320

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSNSLEMILKNI 376
           +G     +   L  +  V GR + V           ++G  + VDYAHT ++L   L  +
Sbjct: 321 LGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTAL 380

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R +     GR++ VFGCGG+RD GKRP MG+IA++ AD  +VT DNPRSE P+ I  +I+
Sbjct: 381 RPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQIL 440

Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            GIP  +      +R  AI   +      DV+++AGKGHET   +  G +K+  D
Sbjct: 441 AGIPAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDI--GGRKLPFD 493



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 143/341 (41%), Gaps = 34/341 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I  G +FVA+ G   DGH ++PQA + GA A VV  A+ + D +       P 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV--AHPVADVA------LPQ 561

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV+ +T   L    +         ++AVTG++GK++    +  I     L+ +Q      
Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAI-----LAQWQ------ 610

Query: 153 ISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 D RL T     + I +   L  L ++    V     +H  +  RL  +     +
Sbjct: 611 ----GDDGRLATAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVA 666

Query: 209 F-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN  R+H ++  T +A  +    +    LP++  A+   D+ Y+    K A     RV
Sbjct: 667 LVTNAQREHQEFMHTVEAVAHENGAVIGA-LPEDGVAVYPGDEPYAAIWDKLA--GARRV 723

Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L  G Q G  ++ ++V    +  Q  +       +   P+PG   + NAL A    +A G
Sbjct: 724 LRFGLQPGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAG 783

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 +  L     V GR +    +   G + +D  + +N
Sbjct: 784 APLHTCIAALAGFQAVAGRMQHRQMSD--GTVLIDDTYNAN 822


>gi|307544546|ref|YP_003897025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
 gi|307216570|emb|CBV41840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
          Length = 503

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 158/447 (35%), Positives = 244/447 (54%), Gaps = 21/447 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +F+A+ G   DG  FI QA+  G  A++   A++    SA+  ++  ++ +
Sbjct: 37  DSRELAEGDVFLAVPGVSVDGRDFIDQALEAGVAAVL---AHAEPGGSAS--ADARVIHL 91

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +     L      L+ + P ++  + VTGT+GKSSV  ++  + +  G  +  +G     
Sbjct: 92  EGLAGQLGELGRSLF-EVPASLELIGVTGTNGKSSVTHYIAALSRLLGRDAGMVGTLGHG 150

Query: 154 SSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
              A ++ RLTTP P+ L  AL  L+++GV  V++EASSH L+Q RL G +L    FTNL
Sbjct: 151 RPGALREGRLTTPGPLALQSALGELAAEGVERVALEASSHALEQERLAGCRLTTAVFTNL 210

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG- 271
            RDH+DYH +  AY  AK RLF    P+   A++  DD  ++ +M     AG RVL+VG 
Sbjct: 211 SRDHLDYHGSMAAYAAAKARLFRR--PELRLAVVNGDDPLAR-LMLAGLPAGVRVLAVGD 267

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +   + +  V  +   Q+  I+    +      L G F + N L+A      +G D   
Sbjct: 268 DEAVTLRVVGVEPLPQGQRAVIATPEGERVLEIALMGGFNLTNVLLAIATLHGLGEDLEA 327

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVFG 389
           +     +L  VPGR + +G ++RG  + +DYAHT ++LE  L+ +R      GR+  +FG
Sbjct: 328 LFAAAAELAPVPGRMQVLG-DARGPTVVIDYAHTPDALENALQALRAHLPDQGRLWCLFG 386

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GN 444
           CGGDRD GKRP+M   A   +D+ ++TDDNPRSE    IR +I+ G+     +     G 
Sbjct: 387 CGGDRDAGKRPLMAAAAERYSDVPVITDDNPRSEAAAAIREQILAGLSESARRSARVLGG 446

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHET 471
           R  AIR  I  ++ +DV+++AGKGHET
Sbjct: 447 RAAAIRETIAEVDAEDVILIAGKGHET 473


>gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 487

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 159/477 (33%), Positives = 247/477 (51%), Gaps = 31/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR +    +FVA+ G + DGH +I +A+ QGA AI+       ++    I + 
Sbjct: 24  ITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAKAVNQGALAIIC------EELPEQIVNG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V +T   L+  AS  YG    N+  + +TGT+GK+++AS + Q+ Q++G   ++ 
Sbjct: 78  ITYVKVADTSSALATIASNFYGNPSANLKLIGITGTNGKTTIASLLYQLFQKAG---YKT 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  ST+             TTP  + + K L+ +S  GV +  +E SSHG+ Q R +G++
Sbjct: 135 GLLSTVKILVDKTEYKATHTTPDSLTINKYLAEMSEAGVEYCFMEVSSHGIHQKRTEGLR 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL  DH+DYH T   Y + K + F+E LPK + A++  DD     +++     
Sbjct: 195 FEGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDE-LPKTAFALVNTDDKNGAVMVQN---- 249

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +   V Y  K     K   + N Q   + ++ +D +    L G F  YN L       
Sbjct: 250 -TKAKKVTYALKSYADYKAQILEN-QLSGLLLKIQDQEVWVKLIGSFNAYNLLAIFATAE 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382
            +G+D    L+ L +L  V GRF++  +      I VDYAHT ++L+ +L+ I  I +  
Sbjct: 308 LLGLDQIEALKLLSELESVSGRFQYFISEGNVTAI-VDYAHTPDALKNVLETINDIRTKN 366

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
             +I V G GGDRD  KRP MG IA  L+   I+T DNPRSE PE I  ++  G+     
Sbjct: 367 EELITVVGAGGDRDTTKRPKMGHIASALSTKTIITSDNPRSEKPEAIIEQVEAGVEPINY 426

Query: 442 K-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           K      +R +AI+TA ++ N  D++++AGKGHET   +  GE+    D  I++E L
Sbjct: 427 KKILSITDRKQAIKTACQLANPGDIILIAGKGHETYQEIM-GERFDFDDYKIVQETL 482


>gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 487

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 164/468 (35%), Positives = 238/468 (50%), Gaps = 25/468 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD 
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGLKQESRLITYSQLDGAAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNI 412

Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I    PGF+          R +AI   I      DV+V+AGKGHE
Sbjct: 413 FDDI---RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHE 457


>gi|157159556|ref|YP_001456874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|254037500|ref|ZP_04871577.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|256025399|ref|ZP_05439264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia sp. 4_1_40B]
 gi|301028568|ref|ZP_07191798.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|307136686|ref|ZP_07496042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli H736]
 gi|331640538|ref|ZP_08341686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331681470|ref|ZP_08382107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|157065236|gb|ABV04491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|226840606|gb|EEH72608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|299878379|gb|EFI86590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|309700296|emb|CBI99584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli ETEC H10407]
 gi|323935137|gb|EGB31504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1520]
 gi|323939875|gb|EGB36075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E482]
 gi|324112502|gb|EGC06479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia fergusonii
           B253]
 gi|331040284|gb|EGI12491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331081691|gb|EGI52852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|332341417|gb|AEE54751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Escherichia coli UMNK88]
          Length = 495

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 251/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
 gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
          Length = 491

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466


>gi|91209149|ref|YP_539135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|117622371|ref|YP_851284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218557025|ref|YP_002389938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli S88]
 gi|237704234|ref|ZP_04534715.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|91070723|gb|ABE05604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|115511495|gb|ABI99569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218363794|emb|CAR01454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli S88]
 gi|226902146|gb|EEH88405.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|294490144|gb|ADE88900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IHE3034]
 gi|323955283|gb|EGB51056.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H263]
          Length = 495

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 171/484 (35%), Positives = 250/484 (51%), Gaps = 24/484 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N     S    + R +
Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490

Query: 493 LGLI 496
           LG+I
Sbjct: 491 LGVI 494


>gi|33603177|ref|NP_890737.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella bronchiseptica RB50]
 gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella bronchiseptica RB50]
          Length = 945

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 160/475 (33%), Positives = 245/475 (51%), Gaps = 41/475 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G +FVA  G   DG  F+ QA+A+GA AI+  +     + +    +    L V
Sbjct: 35  DSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYET-----EGAPVAPAGAQALPV 89

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              R  L   A   YG+  ++  ++A+TGT+GK+S   ++ Q+  R G     IG   T+
Sbjct: 90  AQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIG---TL 146

Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +   D +     LTTP  + + + L+ + + G   V++EASS G++Q RLD I++    
Sbjct: 147 GALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAG 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T Q Y  AK  LF+   P    A++ ADD   + ++     A    L
Sbjct: 207 FTNLTRDHLDYHGTMQRYEQAKAALFQ--WPDLQAAVVNADDPAGERLLASLPAA----L 260

Query: 269 SVGY--QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             GY  QG    +H + + A  + Q  T+++   +   +  L G+  + N L+ AG    
Sbjct: 261 KTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSK 320

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSNSLEMILKNI 376
           +G     +   L  +  V GR + V           ++G  + VDYAHT ++L   L  +
Sbjct: 321 LGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTAL 380

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R +     GR++ VFGCGG+RD GKRP MG+IA++ AD  +VT DNPRSE P+ I  +I+
Sbjct: 381 RPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQIL 440

Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            GIP  +      +R  AI   +      DV+++AGKGHET   +  G +K+  D
Sbjct: 441 AGIPAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDI--GGRKLPFD 493



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 143/341 (41%), Gaps = 34/341 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I  G +FVA+ G   DGH ++PQA + GA A VV  A+ + D +       P 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV--AHPVADVA------LPQ 561

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV+ +T   L    +         ++AVTG++GK++    +  I     L+ +Q      
Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAI-----LAQWQ------ 610

Query: 153 ISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 D RL T     + I +   L  L ++    V     +H  +  RL  +     +
Sbjct: 611 ----GDDGRLATAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVA 666

Query: 209 F-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN  R+H ++  T +A  +    +    LP++  A+   D+ Y+    K A     RV
Sbjct: 667 LVTNAQREHQEFMHTVEAVAHENGAVISA-LPEDGVAVYPGDEPYAAIWDKLA--GARRV 723

Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L  G Q G  ++ ++V    +  Q  +       +   P+PG   + NAL A    +A G
Sbjct: 724 LRFGLQPGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAG 783

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 +  L     V GR +    +   G + +D  + +N
Sbjct: 784 APLHTCIAALAGFQAVAGRMQHRQMSD--GTVLIDDTYNAN 822


>gi|238797711|ref|ZP_04641206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
 gi|238718463|gb|EEQ10284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
          Length = 471

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 238/479 (49%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S +     P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVSEMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            N  + LS  A + Y   P   L + G +G +   +  Q + Q S      +G TS +  
Sbjct: 64  RNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----ALGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A 
Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    
Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLSQLPQAVAVS 236

Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +      G++G ++  +KV    N   +       +      L G F V N LVA    +
Sbjct: 237 MESQVPTGWKGPWLSARKVQYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G+
Sbjct: 297 SLGYPLAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+   ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+ +AI      DV+++AGKGHE   +V N     S    + R +LG++
Sbjct: 413 HALAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVV 470


>gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
 gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
          Length = 491

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-----ESPA 244
           SSH LD  R+ G       FTNL +DH+DYHQT + Y +AK  LF +L        E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQLGNSYNHNGEKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
 gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
          Length = 491

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 254/477 (53%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+   E  +I  + +DSR ++ G +F+ + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+ +DD  ++E M+   +    V++ G      I  + +         T+    +  +  
Sbjct: 237 ILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP+ I  ++++ +    +    +R EAIR+AI  +  +D++++AGKGHET  I+
Sbjct: 410 RSEDPKAILDDMVNDVNRDNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETYQII 466


>gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 514

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 172/486 (35%), Positives = 239/486 (49%), Gaps = 34/486 (6%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA ++GN     DG   IPQAI  GA A++  +        A +R
Sbjct: 32  DLTSDTRKLKTGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLYG-KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               IL VD   +     A++ YG   PE   ++ VTGT+GK+S + ++ Q   + G   
Sbjct: 92  ----ILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147

Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +G   T  + + A     TTP  I L ++L+ L   G   +++E SSHGL+Q R+DG 
Sbjct: 148 AVVGTLGTGFVDALAVTG-FTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGT 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    +++ A  
Sbjct: 207 CFDIAVFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLQNA-R 263

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313
           A    +  G  G+               V     G  FD            P  G F V 
Sbjct: 264 ADIETIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVS 323

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L   G  +  G+     + HLEKL  V GR E  G    G  + VDYAHT ++LE  L
Sbjct: 324 NLLAVLGALLTAGVPWPDAIAHLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP+ I  
Sbjct: 383 RALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILD 442

Query: 431 EI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           EI   +H      +  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D +
Sbjct: 443 EIADGMHNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEIA-GRKRPFSDQE 501

Query: 488 IIREIL 493
            +R  L
Sbjct: 502 HVRLAL 507


>gi|260853298|ref|YP_003227189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
 gi|257751947|dbj|BAI23449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
          Length = 495

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 251/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AI+ ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|156935395|ref|YP_001439311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533649|gb|ABU78475.1| hypothetical protein ESA_03253 [Cronobacter sakazakii ATCC BAA-894]
          Length = 471

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 168/453 (37%), Positives = 238/453 (52%), Gaps = 19/453 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREIHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
               + LS  A R Y +  E +  + VTGT+GK++    + Q CQR G +S  +G     
Sbjct: 64  SQLNERLSALAGRFYDEPSERLRLIGVTGTNGKTTTTQLIAQWCQRLGETSAVMGTVGNG 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +         TT S + +   LS L++QG T  ++E SSHGL QHR+  +K  A  FTNL
Sbjct: 124 LLGKVMPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKFAATVFTNL 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVL 268
            RDH+DYH   + Y  AK  LF         A+I ADD   +  + +  +A        +
Sbjct: 184 SRDHLDYHGDMEHYEAAKWLLFSA--HHYGQAVINADDEVGRRWLAKLPDAVAVSMENNI 241

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G  G+++    V        +  S    D +    L G F V N L+A G  +A+G  
Sbjct: 242 NPGCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALGTLLALGYP 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A +LE   +L  V GR E      +   + VDYAHT ++LE  L+  R   +G++  VF
Sbjct: 302 LAALLESAPRLQPVNGRMEVFSAPGKP-TVVVDYAHTPDALEKALQAARLHCAGKLWCVF 360

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----- 443
           GCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+EDP+ I A+I   + G ++ G     
Sbjct: 361 GCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEDPKAIIADI---LTGMLDAGRARVV 417

Query: 444 -NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             R EA+  AI    + DV+++AGKGHE   IV
Sbjct: 418 EGRAEAVTNAIMQAAENDVVLLAGKGHEDYQIV 450


>gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
 gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
          Length = 974

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 259/457 (56%), Gaps = 25/457 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR +Q G +FVA+ G+  DG  +I  A+ +GA A++        +    + ++
Sbjct: 25  VSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGASAVLADRVGVSAE--QVVNAH 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++  D+ R  L   ASR Y +  +   ++AVTGT+GK++V+  + ++  R G S+  I
Sbjct: 83  GNVIWRDDLRSELGDIASRFYDEPSKQMRVIAVTGTNGKTTVSHLLVRLLMRLGESAKTI 142

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T+     D+ +    TTP  I L + L+     G   V++EASSHGLDQ RL  ++
Sbjct: 143 G---TLGYGHPDHLIPLANTTPDAIQLHEILAACREDGARFVAMEASSHGLDQGRLGCVE 199

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTN+ RDH+DYHQT QAY+ AK +L      +    ++ ADDA   ++   A + 
Sbjct: 200 ISTAVFTNITRDHLDYHQTMQAYWEAKAKLASWHGLRN--LVLNADDAGVAKMAAVAEH- 256

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAG 320
           G +++    +    + +  V  +++ + +++ +  KD  + F   L GEF V N L    
Sbjct: 257 GVKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTRLMGEFNVANILAVLA 316

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIR 377
             ++ G  ++LV++ L+++  V GR + +  ++ G +   + +DYAHT ++L+  L  +R
Sbjct: 317 ALVSEGFSASLVVDALKEIAPVKGRMDCL-PHTSGAQLPAVVIDYAHTPDALQQALNALR 375

Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
              T+G++  VFGCGGDRD+GKRP+MGKIA   AD  +VT DNPRSE P+ I AEI  G+
Sbjct: 376 HHCTTGKLWCVFGCGGDRDKGKRPLMGKIAASSADRVVVTSDNPRSEVPDVIIAEIRGGM 435

Query: 437 PGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               +     +R EAIR AI +   +DV+++AGKGHE
Sbjct: 436 EATDQVRLVTDRGEAIRDAIFLAAPEDVILIAGKGHE 472



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 27/227 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R +++  +F A+VG K D H F+ QA   GA   VVS    +         + P 
Sbjct: 542 VSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGACGAVVSRWVDV---------DLPQ 592

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V++TR  L  +A     +    ++AVTG+SGK+SV   +  I    G           
Sbjct: 593 IKVEDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEMLAAIFSEEG--------RVL 644

Query: 153 ISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            +S   +N +  P + + L  +  +   + G  HV   A + GL       ++  A   T
Sbjct: 645 ATSGNLNNDIGVPLTLLRLDDSYQFAVIELGANHVGEIAYTVGL-------VRPDAALIT 697

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           N+G  H++   ++     AK  ++  L+PK   A++  DD YS++ +
Sbjct: 698 NVGEAHLEGFGSRNNIAKAKSEIYTGLVPK-GVAVVNLDDDYSQDFL 743


>gi|78221628|ref|YP_383375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
 gi|123572782|sp|Q39YM4|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
          Length = 511

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 173/486 (35%), Positives = 244/486 (50%), Gaps = 61/486 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR +++G +F A+ G   DGH +I  +  +GA A+VV          + +  
Sbjct: 22  EIEGLYCDSRQVRSGGLFFALRGVATDGHDYIVASRDRGAVAVVVED-------PSRVPE 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
               L VD+ R  +S  A+  YG   + I  V  T       +   V+ +  R+G+    
Sbjct: 75  GMTWLKVDDARLAMSRAAAAFYGNPTDGIPVVGITGTNGKTTTTYLVEAVMARAGIPVAV 134

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TIS    D  +    TTP  + L + +  L  +G   V +E SSH L+Q R+DG 
Sbjct: 135 LG---TISYRFGDKTIPAPHTTPESVDLQRTIRDLVDRGAQGVVMEVSSHALEQRRVDGC 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-----PAIIYADDAYSKEVM 257
           +   G FTNL RDH+DYH+  ++YF +K RLF ELL  +       A+I  DD Y   + 
Sbjct: 192 RFDVGVFTNLTRDHLDYHRDMESYFESKARLFTELLAADDTKPRRAAVINVDDPYGARL- 250

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------G 308
             A +A   V+S G             +   + VT SV+G     + PL          G
Sbjct: 251 --ASDAVAPVVSYGLS--------PSVMVRAEMVTFSVDGISGTLVTPLGTIPFHSRLLG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F +YN L A    +A+G+    +   +E    VPGR E V  N  G  + VDYAHT ++
Sbjct: 301 RFNLYNILAAVAAGVALGLSPDAIRGGIEGDVRVPGRLERV-DNDHGITVLVDYAHTGDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +LK +  I +GRII VFGCGGDRD+GKRP+MG+IA   +D++IVT DNPR+ED   I
Sbjct: 360 LENVLKTVAEIATGRIITVFGCGGDRDRGKRPVMGEIAGRFSDLSIVTSDNPRTEDAGAI 419

Query: 429 RAEIIHG--------------IPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGH 469
             EI+ G              I GF  KG     +R EAIR A  +    DVL++AGKGH
Sbjct: 420 IGEILGGIRSLGLREYGAEELITGFDAKGFAAVESRREAIRLAARVARPGDVLLLAGKGH 479

Query: 470 ETVHIV 475
           E   I+
Sbjct: 480 EDYQII 485


>gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
 gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
          Length = 487

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 164/468 (35%), Positives = 238/468 (50%), Gaps = 25/468 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD 
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNI 412

Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I    PGF+          R +AI   I      DV+V+AGKGHE
Sbjct: 413 FDDI---RPGFVAADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHE 457


>gi|260596510|ref|YP_003209081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter turicensis z3032]
 gi|260215687|emb|CBA28019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cronobacter turicensis z3032]
          Length = 501

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 167/461 (36%), Positives = 241/461 (52%), Gaps = 19/461 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D      
Sbjct: 26  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREI 85

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  + +  + VTGT+GK++    + Q CQR G +S 
Sbjct: 86  HGVPVIYLSQLNERLSALAGRFYDEPSDRLRLIGVTGTNGKTTTTQLIAQWCQRLGETSA 145

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   LS L++QG T  ++E SSHGL QHR+  +K 
Sbjct: 146 VMGTVGNGLLGKVSPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKF 205

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH   + Y  AK  LF         A+I ADD   +  + +  +A 
Sbjct: 206 AATVFTNLSRDHLDYHGDMEHYEAAKWLLFSA--HHYGQAVINADDEVGRRWLAKLPDAV 263

Query: 265 C----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  ++    G+++    V        +  S    D +    L G F V N L+A G
Sbjct: 264 AVSMENNINPDCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALG 323

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A+    A +LE   +L  V GR E      +   + VDYAHT ++LE  L+  R   
Sbjct: 324 TLLALDYPLAALLESAPRLQPVNGRMEVFSAPGKP-TVVVDYAHTPDALEKALQAARLHC 382

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           +G++  VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+EDP  I A+I+ G+   +
Sbjct: 383 AGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEDPRAIIADILTGM---L 439

Query: 441 EKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + G       R EA+  AI    + DV+++AGKGHE   IV
Sbjct: 440 DAGRARVVEGRAEAVTNAIMQAAENDVVLLAGKGHEDYQIV 480


>gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chitinophaga pinensis DSM 2588]
 gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis
           DSM 2588]
          Length = 488

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 254/485 (52%), Gaps = 40/485 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N +S DSR +  G  F+AI G   DGHLFI +AIAQGA  I+       ++   ++  +
Sbjct: 24  VNSLSIDSRAVTQGGAFIAIKGVHADGHLFIDKAIAQGAAVIIC------EELPQSLADD 77

Query: 90  TPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++V+++     + A   Y    H   ++ VTGT+GK+++A+ + ++  +     F  
Sbjct: 78  LTYVLVNSSATAAGVIAGNYYDNPSHKLKLVGVTGTNGKTTIATLLFRLFSKL---RFHC 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  ST+ +   D  +    TTP  I+L   L+ +  +G  +V +E SSH + Q R+ G+K
Sbjct: 135 GLLSTVQNQIGDKVVPATHTTPDAIHLNALLADMVDEGCEYVFMEVSSHAVHQQRIAGLK 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261
              G F+N+  DH+DYH+T   Y   K   F+  LP  + A+   DD     +++  RA 
Sbjct: 195 FAGGIFSNITHDHLDYHKTFDEYIKVKKAFFDG-LPTTAFALTNLDDKRGNVMLQNTRAK 253

Query: 262 NAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                + +V  ++GK +        +N   + ++V  K+    F L GEF  YN L   G
Sbjct: 254 KQSYSLKTVADFKGKILE-------NNLTGLIMTVNEKEVH--FRLIGEFNAYNLLAVYG 304

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378
             I +G D   VL+ L  L    GRF+++   S   RI   VDYAHT ++L  +L  I+ 
Sbjct: 305 TAILLGQDKDEVLQALSDLSGAEGRFDYI--TSAKDRIIGIVDYAHTPDALLNVLATIKN 362

Query: 379 ITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +  G  ++I V GCGGDRD  KRP+M   A + +D  I+T DNPRSEDP  I  ++  GI
Sbjct: 363 LRKGNEQVITVVGCGGDRDTAKRPVMAAAATEHSDKVILTSDNPRSEDPVAIIQQMEAGI 422

Query: 437 PGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           P   ++      +R EAI+TAI + N  D++++AGKGHE    +  G K    D  ++ E
Sbjct: 423 PVHQKRKALSITDRKEAIKTAISLANPDDIILIAGKGHEKYQEI-QGVKHPFDDKKVLLE 481

Query: 492 ILGLI 496
           +L L+
Sbjct: 482 MLELM 486


>gi|193065884|ref|ZP_03046945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|193070831|ref|ZP_03051764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194429350|ref|ZP_03061875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|256020077|ref|ZP_05433942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sp. D9]
 gi|260842321|ref|YP_003220099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|260866238|ref|YP_003232640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|307311464|ref|ZP_07591106.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|332281227|ref|ZP_08393640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
 gi|192926471|gb|EDV81104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|192955861|gb|EDV86331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194412570|gb|EDX28867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|257757468|dbj|BAI28965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|257762594|dbj|BAI34089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|306908443|gb|EFN38941.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|315059308|gb|ADT73635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli W]
 gi|320200396|gb|EFW74982.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli EC4100B]
 gi|323176393|gb|EFZ61985.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1180]
 gi|323380134|gb|ADX52402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli KO11]
 gi|332103579|gb|EGJ06925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
          Length = 495

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 251/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AI+ ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|320172824|gb|EFW48056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella dysenteriae CDC 74-1112]
          Length = 495

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 252/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    ++   G+++ +  V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINLNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 491

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 489

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 160/481 (33%), Positives = 255/481 (53%), Gaps = 36/481 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR ++ G +F+ I G   DGH +I +AI  GA AIV+     + +       N  +
Sbjct: 26  VSYDSRKVKGGSVFICIKGANADGHDYIDEAIKSGALAIVIQEEIKIDN------ENITV 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + V NT+  L+  A+  Y +  +  N++ VTGT+GK++V  +++ I +     +  IG  
Sbjct: 80  IKVRNTKLALASIANVFYNEPSKEINLVGVTGTNGKTTVIHYIKDILESYKKRTAIIGTL 139

Query: 151 ----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +   +  Q    TTP  + L        ++G  ++ +E +S  L + R++      
Sbjct: 140 GYEFNKEKASIQKVNPTTPESLELQGLFREFINKGAENIVMEVTSSALAKQRVEYCDFKV 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL +DH++ H T + Y N K++LF+    K    +I  DD  ++E++++A    C+
Sbjct: 200 GVFTNLSQDHLEEHGTMENYKNEKIKLFK----KCELGVINLDDGIAEEIIQKA---SCK 252

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVA 318
           +L+ G   K   ++     +    +   ++ +D         D    +PG+  VYN L A
Sbjct: 253 ILTYGIN-KEADIRATEIRYRNDCIIFKIKFRDIKWRWWCITDVKVNIPGKITVYNVLAA 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G CI +G+D   ++  L  L  VPGR E +  N+    I VDYAHT ++LE +L   R 
Sbjct: 312 IGACIGLGMDMGDIISCLSNLRHVPGRLEMI-KNNLNKNIIVDYAHTPDALERLLMMARE 370

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--- 435
            T G++I VFGCGGDRD+ KR +MG  A  L+D  I+T DNPR+EDP KI  +I  G   
Sbjct: 371 TTKGKLITVFGCGGDRDKSKRKVMGMAAGILSDYCIITSDNPRTEDPIKIIEDIEEGMEV 430

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC-DIIREIL 493
           I    EK  +R +AI   +++L   D+L++AGKGHE   I+  G+ K+  D  +I+R+ L
Sbjct: 431 INSTYEKIVDRKKAIEKGLKLLKDDDLLIIAGKGHEDYQII--GKDKIYFDDREIVRKAL 488

Query: 494 G 494
           G
Sbjct: 489 G 489


>gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechocystis sp. PCC 6803]
 gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803]
          Length = 505

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 161/464 (34%), Positives = 236/464 (50%), Gaps = 15/464 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S++S     G +F+ + G + DG  F   A+  GA A VVS   +LQ F    ++ 
Sbjct: 35  VTGLSTNSHACPPGTLFIGMPGTRVDGGEFWSGALEAGAIAAVVSEK-ALQKFPP--QNG 91

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             ++ V +     +  A+  Y +HP   L    VTGT+GK++ +  ++    +   SS  
Sbjct: 92  ECVIAVPDLVPVCAGLAAAFY-QHPAQTLQLVGVTGTNGKTTTSHLIEYFLNQQQRSSAL 150

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   T    + +    TTP    L K L+     G  +  +E SSH L Q R+      
Sbjct: 151 LGTLYTRWPGYQKTATHTTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFA 210

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+D+H T + YF AK  LF+E    +  A+I  DD Y + ++ R      
Sbjct: 211 CAVFTNLTQDHLDFHGTMENYFAAKALLFKESY-LQGRAVINQDDPYGQRLIDRLPLDQV 269

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              SV       + K +       + T      +F FL PL G+F + N L A    + +
Sbjct: 270 YTYSVNDSTADFYTKDLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAAIASGLHL 329

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           G+D A +++ L     VPGR E V     +   + VDYAHT +SLE  LK  R    GR+
Sbjct: 330 GLDPAAMVKDLLDFPGVPGRMEQVQIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRL 389

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-- 442
           I +FGCGGDRD+ KRP+MG IA  LAD+A+VT DNPR+EDPE+I A+++ GI   IE   
Sbjct: 390 ICIFGCGGDRDRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGISLDIEPWI 449

Query: 443 -GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G+R  AI  AI      D +++AGKGHE   I+  G +K+  D
Sbjct: 450 IGDRATAIHKAIREAKPGDGVLIAGKGHEDYQIL--GTEKIHFD 491


>gi|323964819|gb|EGB60286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli M863]
          Length = 495

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 251/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV+++AGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
 gi|46576978|sp|Q819Q0|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
          Length = 491

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  ++ L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466


>gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 491

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG+ G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|218547542|ref|YP_002381333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355083|emb|CAQ87690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
          Length = 495

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 495

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 241/459 (52%), Gaps = 33/459 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++ +I  +S D+R +  G +FVA+ G K DG L+I +A+A+GA A+V       +    T
Sbjct: 19  QDMEITSISYDTRTLLPGALFVALPGAKTDGSLYIDEALAKGAAAVVCRRRPQREGVFFT 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
               TP     + R+ L+L A   +G HP  E  L     +   +  +F+ +      L 
Sbjct: 79  ----TP-----DPRRALALLAENWFG-HPGREMTLIGVTGTNGKTTTTFLIKEMLEGALK 128

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           + Q+G   TI +   +  L    TTP    + + L  ++  G THV +E SSH L QHR+
Sbjct: 129 T-QVGLIGTIQNMVGERVLPAHRTTPESYEVQQLLREMADSGCTHVVMEVSSHALVQHRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +G+     +FTNL +DH+DYH T + Y +AK RLF +       A++  DD   +   +R
Sbjct: 188 EGLDFSVAAFTNLTQDHLDYHHTMEEYRSAKERLFHQC----RRAVLNLDDEAGRWYRER 243

Query: 260 AHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALV 317
                C V +         L  K   ++  Q    +V  +    +F P+PG F +YNAL 
Sbjct: 244 L---ACPVFTYSENKDQADLTAKGIRLYPGQVEFEAVAREQIQRVFLPIPGGFTIYNALC 300

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  + + +G+  +     L     V GR E V   +    + +DYAH+ N+LE IL   R
Sbjct: 301 ALSVGLCLGLRLSECAAALRSARGVKGRVEVVPVPT-AYTVLIDYAHSPNALENILLTAR 359

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             T+GR+I +FGCGGDRD+ KRPIMG +  +LAD+A+VT DNPR+EDPE I  +I+ G+ 
Sbjct: 360 DFTAGRLICLFGCGGDRDRTKRPIMGDVVKELADLAVVTSDNPRTEDPEDIIRDILAGME 419

Query: 438 G-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G      +E  +R +AI  A+      DV+V+AGKGHET
Sbjct: 420 GEGAQIHVEP-DRRQAIAWALSQGRPGDVIVLAGKGHET 457


>gi|33593958|ref|NP_881602.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella pertussis Tohama I]
 gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella pertussis Tohama I]
 gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS]
          Length = 945

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 160/475 (33%), Positives = 245/475 (51%), Gaps = 41/475 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G +FVA  G   DG  F+ QA+A+GA AI+  +     + +    +    L V
Sbjct: 35  DSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYET-----EGAPVAPAGAQALPV 89

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              R  L   A   YG+  ++  ++A+TGT+GK+S   ++ Q+  R G     IG   T+
Sbjct: 90  AQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIG---TL 146

Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +   D +     LTTP  + + + L+ + + G   V++EASS G++Q RLD I++    
Sbjct: 147 GALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAG 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T Q Y  AK  LF+   P    A++ ADD   + ++     A    L
Sbjct: 207 FTNLTRDHLDYHGTMQRYEQAKAALFQ--WPDLQAAVVNADDPAGERLLASLPAA----L 260

Query: 269 SVGY--QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             GY  QG    +H + + A  + Q  T+++   +   +  L G+  + N L+ AG    
Sbjct: 261 KTGYSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSK 320

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSNSLEMILKNI 376
           +G     +   L  +  V GR + V           ++G  + VDYAHT ++L   L  +
Sbjct: 321 LGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTAL 380

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R +     GR++ VFGCGG+RD GKRP MG+IA++ AD  +VT DNPRSE P+ I  +I+
Sbjct: 381 RPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQIL 440

Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            GIP  +      +R  AI   +      DV+++AGKGHET   +  G +K+  D
Sbjct: 441 AGIPAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDI--GGRKLPFD 493



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 142/341 (41%), Gaps = 34/341 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I  G +FVA+ G   DGH ++PQA + GA A VV  A+ + D +       P 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV--AHPVADVA------LPQ 561

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV+ +T   L    +         ++AVTG++GK++    +  I     L+ +Q      
Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAI-----LAQWQ------ 610

Query: 153 ISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 D RL T     + I +   L  L ++    V     +H  +  RL  +     +
Sbjct: 611 ----GDDGRLATAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVA 666

Query: 209 F-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN  R+H ++  T +A  +    +    LP++  A+   D+ Y+    K A     RV
Sbjct: 667 LVTNAQREHQEFMHTVEAVAHENGAVIGA-LPEDGVAVYPGDEPYAAIWDKLA--GARRV 723

Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L  G Q G  ++ ++V    +  Q  +           P+PG   + NAL A    +A G
Sbjct: 724 LRFGLQPGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAG 783

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 +  L     V GR +    +   G + +D  + +N
Sbjct: 784 APLHTCIAALAGFQAVAGRMQHRQMSD--GTVLIDDTYNAN 822


>gi|194439405|ref|ZP_03071482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|253774885|ref|YP_003037716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160207|ref|YP_003043315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|194421664|gb|EDX37674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|242375921|emb|CAQ30602.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|253325929|gb|ACT30531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972108|gb|ACT37779.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|253976317|gb|ACT41987.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|323960031|gb|EGB55677.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H489]
 gi|323970757|gb|EGB66011.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TA007]
          Length = 495

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 487

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 241/479 (50%), Gaps = 26/479 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY +   +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVAGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DD 
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSDLKCRVINLDDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M  +   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSI 412

Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             +I    PGF+          R +AI   I   N  DV+V+AGKGHE    + NG+++
Sbjct: 413 FDDI---RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQ 467


>gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
          Length = 508

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 162/487 (33%), Positives = 256/487 (52%), Gaps = 52/487 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ ++ DSR ++ G +F A+ G   DGH +   A+ +GA A+VV     L D    +  
Sbjct: 21  EISHLAYDSRCVRPGTLFFALRGVLVDGHDYAKSAVERGAVAVVVEQPVDLPDEIVQV-- 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                VVD++R  ++  A+  Y    + +L   VTGT+GK+++   ++ + +++G +   
Sbjct: 79  -----VVDDSRYAMARCAACFYDYPAQGMLIVGVTGTNGKTTMTYLLESVLKQAGYTPAV 133

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TIS+   D+ +    TTP  + L + L+   SQG   + +E SSH L Q R+ G+
Sbjct: 134 VG---TISNRMGDDAVEAEHTTPESLDLQRILAEFKSQGADALVIEVSSHALMQSRVVGL 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK---ESPAIIYADDAYSKEVMKR 259
                 FTNL  +H+DYH+  ++YF AK RLF+E  P+   +  A++  DD Y  ++++ 
Sbjct: 191 TFDVAVFTNLTPEHLDYHKNMESYFAAKTRLFKE--PQIYGDFTAVVNTDDPYGAKLVRE 248

Query: 260 AHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNA 315
            +      LSVG ++G  +   +VC +    Q    T+     +     PL G F + N 
Sbjct: 249 LNEP----LSVGMHRGADV---RVCDVEQTMQGTVATLETPQGEITVRSPLVGPFNLENL 301

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G  + + +    + + L   + VPGR E V  N+ G  I VDYAHT ++L   L+ 
Sbjct: 302 LCAVGAGLVLDLPITTIEQGLAAANRVPGRLEPV-DNTLGALIVVDYAHTGDALAKALEA 360

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +  +   RII VFGCGGDRD  KRP MG++A   +D++IVT DNPR+E+P KI  +I  G
Sbjct: 361 MAALKPQRIITVFGCGGDRDTLKRPAMGEVAGRYSDLSIVTSDNPRTENPAKIIDDIKVG 420

Query: 436 I----PGFIEKG-------------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           I    P     G             +R EAI  A+  L   D+L++AGKGHE   ++  G
Sbjct: 421 IERICPNLAVDGDPDSVGKCYVVIEDRHEAIVYAVNQLRAGDLLLIAGKGHEDYQVI--G 478

Query: 479 EKKMSVD 485
            +K+  D
Sbjct: 479 TQKIHFD 485


>gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132]
 gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans ND132]
          Length = 507

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/473 (32%), Positives = 236/473 (49%), Gaps = 34/473 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR IQ G  FVA+ G    G  +IP A+  GA  IV   A   +D  A +     +
Sbjct: 33  VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVAPEA--ARDLVAPVVEKKAV 90

Query: 93  LV-VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            V VDN    L   A   +     ++  +A+TGT+GK++ +  ++ +   SGL   ++G 
Sbjct: 91  AVYVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGL---KVGV 147

Query: 150 TSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             T++     F  D  LTTP    + + L  +    V    +E SSH LDQ+R+ G+   
Sbjct: 148 LGTVNYRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYRVAGLDFD 207

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH---- 261
           A  FTNL +DH+DYH   + YF AK +LF E       A++  DD Y + ++        
Sbjct: 208 AAVFTNLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQGGIG 267

Query: 262 ----NAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               +A      VG     QG+ + +          ++  S +GK +    PL G F   
Sbjct: 268 YGIGDASLVRQEVGDKPLVQGRILSM-----TGQGMEIETSWKGKTWVVRSPLVGSFNAL 322

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A  + + +G++    +  L     VPGR E V  N +   I+VDYAHT ++L+ + 
Sbjct: 323 NLLAAQAVGLQLGLNCK-DMRRLSTFPGVPGRLERV-MNDKNLDIFVDYAHTPDALDNVQ 380

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +  +   R+I VFGCGGDRD+ KRP+M   A   AD+A++T DNPR+EDP  I  +  
Sbjct: 381 RTLAALDFKRLITVFGCGGDRDRTKRPLMAASAARYADVAVLTSDNPRTEDPAAIMDDAR 440

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            G+ G    +E  +R EAI+ A+  +   D L++AGKGHE   I+   ++  S
Sbjct: 441 PGLAGAKRVMENPDRTEAIKMAVAEMEPGDALLIAGKGHEDYQIIGTTKRHFS 493


>gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
 gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
          Length = 493

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 247/476 (51%), Gaps = 18/476 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++++  DSR +  G  FVA+ G+  DG  FI  AI +GA A+V   +      S  +++ 
Sbjct: 27  VSQLELDSRKVTPGATFVAVQGHAVDGRKFIASAIDKGAAAVVAQESSEHPHGSIEVQAG 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +++    LS  A RLY      ++ VTGT+GK+++    Q I Q  GL   +   
Sbjct: 87  IPVVYIESLDSQLSALAERLYPLQSMKLIGVTGTNGKTTI---TQIIAQWLGLVEKRAAV 143

Query: 150 TSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             T  +      Q    TT S I + + L+ L  Q   + ++E SSHGL Q R+  +   
Sbjct: 144 LGTAGNGFLDALQPAVNTTGSAIEIQQTLAALEQQSADYTAMEISSHGLVQGRVKTLPFA 203

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH T + Y  AK+ LF E   K + A+I  DD           N+  
Sbjct: 204 VSVFTNLSRDHLDYHGTMEEYEQAKLTLFTE--HKTAHAVINVDDPVGARWASTLANSVQ 261

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323
             L        I+  +V   +++  +++S  G   D     PL GEF   N LVA    +
Sbjct: 262 VSLKTLDADNAIYASQVD--YSESGISLSFSGMYGDGKLDVPLIGEFNANNVLVALATLL 319

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID   ++E   +L  V GR E   T S+  ++ VDYAHT ++LE  L  +R    G+
Sbjct: 320 TLGIDKQRLVETASQLTPVIGRMELFQTPSKA-KVVVDYAHTPDALEKALLALRVHCKGK 378

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441
           + V+FGCGGDRD GKRP+M +I   LAD  I+ DDNPRSEDP +I  +++ G+  P    
Sbjct: 379 LWVIFGCGGDRDVGKRPMMAEIGERLADKVIIADDNPRSEDPARIVEDMLAGMSQPDLAS 438

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            + +R  A++ A+     QD++++AGKGHE   ++ N E     D +  +++L LI
Sbjct: 439 VEHDRFNALQFALSQSQAQDIILLAGKGHEDYQVLAN-ETIHYSDRESAQQLLELI 493


>gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 495

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 247/487 (50%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVAIVG+K DG  +IPQAIAQG  AIV  +     D +    
Sbjct: 20  RALREMTLDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAEGEAADGTVREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ + N  + LS  A R Y + P   L + G +G +   +  Q + Q S      +
Sbjct: 80  HGVPVVYLSNLNQRLSALAGRFY-QQPAEKLQLIGVTGTNGKTTTTQLLAQWSQ----AL 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + + + LS L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVEQGATFAAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH   ++Y  AK  LF E   +    II ADD      + +
Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFGE--HRVGQMIINADDEVGLRWLAQ 252

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        L  G +G+++   ++    N   +         +    L G F V N 
Sbjct: 253 LPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIESRLMGAFNVSNM 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +++G     ++    +L  V GR E      +   + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFQAEGKP-TVVVDYAHTPDALEKALEA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G
Sbjct: 372 ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSG 431

Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +   ++ G       R EA+ +AI    + DV++VAGKGHE   +V N     S    + 
Sbjct: 432 L---LDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLDYSDRITVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
 gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
          Length = 492

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 172/508 (33%), Positives = 245/508 (48%), Gaps = 39/508 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
            AIA GA  +          F+     N P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDD---GKFTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                AII  DD Y  E++ R     C  L+V Y   F     +C        T S +G 
Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKK-DCPDLAV-YGYGFSEQADICIT----DFTASSDGM 283

Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  F  P         L G F   N      L  A G     VLE L K+    GR + +
Sbjct: 284 EAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMDCI 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             NS    + VDYAHT ++LE  L  ++ I   S  +  VFGCGG+RD+GKRP+MG  A+
Sbjct: 344 -MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQSAALWCVFGCGGNRDRGKRPLMGAAAV 402

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             AD  +VT DNPR E+P+ I  +I+  +P   ++E  +R  AIR A+E     D++++A
Sbjct: 403 QGADKVVVTSDNPRLENPQDIINDILPAVPAPEYVE-ADRAAAIRYAVERAATNDIILIA 461

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHE    V  G K    D +I  + L
Sbjct: 462 GKGHENYQDV-QGVKHHFSDFEIAEKAL 488


>gi|323950919|gb|EGB46796.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H252]
          Length = 495

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/484 (35%), Positives = 249/484 (51%), Gaps = 24/484 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELVGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N     S    + R +
Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490

Query: 493 LGLI 496
           LG+I
Sbjct: 491 LGVI 494


>gi|313646532|gb|EFS10993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2a str. 2457T]
          Length = 490

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 243/468 (51%), Gaps = 29/468 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 15  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 75  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 129

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 130 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 190 AALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 247

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 248 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 307

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 308 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 367 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 423

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 424 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 471


>gi|157369001|ref|YP_001476990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Serratia proteamaculans 568]
 gi|157320765|gb|ABV39862.1| UDP-N-acetylmuramyl-tripeptide synthetase [Serratia proteamaculans
           568]
          Length = 495

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 246/487 (50%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  FIPQAIAQG  A++  +    +D + T  
Sbjct: 20  RALREMTLDSRIAAAGDLFVAVVGHQADGRRFIPQAIAQGVAAVIAEAEGQAEDGAITEM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P   L + G +G +   +  Q + Q   L    +
Sbjct: 80  HGVPVIYLSQLNQRLSALAGRFY-HEPAERLRLVGVTGTNGKTTTTQLLAQWGQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGQVCPTENTTGSAVDIQHVLNELVDQGATLAAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH     Y  AK  LF     +   AII ADD   +  + +
Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMANYEAAKWSLFAG--HEVGQAIINADDEVGQRWLSQ 252

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        L  G  G+++    V    N   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVTMQDNLQPGCHGRWLKTTAVNYHDNGATIHFSSSWGDGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +++G   A ++    +L  V GR E      +   + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLSLGYPLAKLVATGNQLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALEA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPR+E+P+ I A+I+ G
Sbjct: 372 ARLHCLGQLWCVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTG 431

Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +   ++ G       R EA+ +AI    +QDV++VAGKGHE   +V N     S D   +
Sbjct: 432 L---LDAGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKGHEDYQLVGNRRLDYS-DRTTV 487

Query: 490 REILGLI 496
             +LG++
Sbjct: 488 ARLLGVV 494


>gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 497

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 177/479 (36%), Positives = 245/479 (51%), Gaps = 56/479 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +V  DSR +  G +FVA+ G   DGH F P+A+ +GA A+VV    +     A IR+
Sbjct: 20  EITDVVYDSRQVTPGALFVALPGRNVDGHDFAPEAVQRGAAALVVERPVAAPAHVAVIRT 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
                  D+TR  L   A+  + +HP   + V G +G +   +    V+ + +R G    
Sbjct: 80  -------DSTRAALGRLAAEFW-RHPSRRMRVVGVTGTNGKTTTTHLVKAVLERQG---H 128

Query: 146 QIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +G T T+ +     R    LTTP    L +    ++  G T+  +EASS GLD +R+D 
Sbjct: 129 VVGLTGTVHTLMPGERRPAGLTTPEASDLQRLFHQMAEAGCTYAVMEASSQGLDMNRVDD 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESP---AIIYADDA---YSK 254
           ++   G FTNL +DH+DYH T  AY  AK +LF  L  P   P   A++ ADD    Y +
Sbjct: 189 VEFDLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLLSRPGYKPRKAAVLNADDPASEYYR 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--------- 305
            V +        V + G++          A+     V +S  G       P         
Sbjct: 249 SVTE------VPVYTYGFRPD--------AMVRAADVELSPAGTRLRLCTPQGEVPVSLR 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F VYNAL AA   +A GI   ++ + LE    VPGR + V      G ++VDYAH+
Sbjct: 295 LVGRFNVYNALAAAAAGVAEGIALDVIRDALEAEEGVPGRLQPVRAGQPFG-VFVDYAHS 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +SLE +L   R  T GR+IVVFGCGGDRD  KRP+MG+IA  LA   IVT DNPRSEDP
Sbjct: 354 PDSLENVLHTARGFTRGRLIVVFGCGGDRDPTKRPVMGRIAGCLAHHTIVTSDNPRSEDP 413

Query: 426 EKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +I  +I  G+   +  G       +R EAIR A+ M    DV+V+AGKGHET  I  +
Sbjct: 414 VRIVQQIESGLVDGLLPGHTYEVVIDREEAIRRAVTMAEPDDVIVIAGKGHETYQIFKD 472


>gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
 gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
          Length = 489

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 167/485 (34%), Positives = 251/485 (51%), Gaps = 45/485 (9%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL++ +S  P + +   ++ I  +  DSR +  G +F  I G   DGH +  QA  +GA 
Sbjct: 6   ELLDHIS--PCRVKGDLDQDIKSLEMDSRLVSEGALFFCIRGFTVDGHDYAAQAADRGAV 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126
           A +      +         +   L+V ++R+ ++  A+R Y  +P +   ++ VTGT+GK
Sbjct: 64  AFLTEEELPV---------DGTQLIVRDSRRAMAQLAARFY-NYPSDRMTMIGVTGTNGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SV  F+Q + +R+G  +  IG   T +     +   TTP    L K L+ +   G   V
Sbjct: 114 TSVTHFIQDLLKRAGTEAGMIGTMYTELKGIQTETVNTTPESFTLQKRLNEMYLAGAEAV 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPK 240
           ++E SSH L   R+ G       FTNL +DH+DYHQT   Y  AK  LF +L        
Sbjct: 174 TMEVSSHALHLGRVHGTAFDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQLGSGGETDA 233

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--------QVT 292
              A+I  DD+Y+ ++M  A  +   V++ G       ++K C +  +         + T
Sbjct: 234 YKRAVINVDDSYA-DIMLGA--SAVPVITYG-------IEKPCDVRAEDLEVSPEGIRFT 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I +  + +     L G F VYNAL A     AIGI+       L +L  V GRFE V T+
Sbjct: 284 IRLNQQSYPVQLKLAGTFSVYNALAAFAAVYAIGIEPEQAARFLSELPQVRGRFERVETD 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    + VDYAHT + LE +++  +  T   + VVFGCGGDRD+ KRP+MGK+A DLAD 
Sbjct: 344 A-PFHVIVDYAHTPDGLENVIRTAKETTDRPVTVVFGCGGDRDRKKRPLMGKLAEDLADH 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I+T DNPRSE+PE I  +I+ G+       + +R  AI  AI    + +V+V+AGKGHE
Sbjct: 403 VILTSDNPRSENPEAIIQDILSGMSKDNHTVQTDRKAAITHAIMNATEGEVIVIAGKGHE 462

Query: 471 TVHIV 475
           T  I 
Sbjct: 463 TYQIT 467


>gi|312966213|ref|ZP_07780439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|312289456|gb|EFR17350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
          Length = 495

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/484 (35%), Positives = 250/484 (51%), Gaps = 24/484 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N     S    + R +
Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490

Query: 493 LGLI 496
           LG+I
Sbjct: 491 LGVI 494


>gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
 gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
          Length = 493

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 231/470 (49%), Gaps = 22/470 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +Q G +FVA  G   DG  +IP AIA GA  +   S      F+         L V
Sbjct: 30  DSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSG---DGFAWRPEWQIANLGV 86

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
            + ++   L A++LYG    ++    VTGT+GK+S++ ++ Q           IG     
Sbjct: 87  PHLKQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTVGNG 146

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                ++   TTP+P+ +   L     QG   V++E SSHGLDQ+R+ G    +  FTNL
Sbjct: 147 FWGRLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPFSSAIFTNL 206

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV 270
            RDH+DYH +  AY  +K +LF         AII  DD + +E+    RA      V   
Sbjct: 207 TRDHLDYHGSMAAYGASKAKLF--YWQSLQHAIINTDDEFGRELAAGLRADRPNLNVYGY 264

Query: 271 GYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G+  +  I + +  A     QV         +    L G F   N     GL  A G   
Sbjct: 265 GFNEQADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEGYSL 324

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTIT--SGRII 385
             VL  L ++    GR + +   SR GR  + VDYAHT ++LE  L  +R I      + 
Sbjct: 325 PDVLRVLAQIRPATGRMDCI---SRAGRPLVVVDYAHTPDALEKALATLREIKPQGASLW 381

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443
            VFGCGG+RD+GKRP+MG  A+  AD  ++T DNPR E+P+ I A+I+  +  P  +E  
Sbjct: 382 CVFGCGGNRDRGKRPLMGSAAVQGADKVVITSDNPRMEEPQDIIADILPAVPQPALVEAD 441

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            R+ AI+TAI     QD++++AGKGHET   V  GEK    D +I    L
Sbjct: 442 RRV-AIQTAIRRAAPQDIVLIAGKGHETYQDV-QGEKHHFSDFEIAEAAL 489


>gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
 gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
          Length = 497

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 247/478 (51%), Gaps = 29/478 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR +  G +F+A  G   DG  FIP A+A GA  ++   A     F+     N
Sbjct: 23  LKRVETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPA---DGFNWNPAWN 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P L V   R    + AS  YG+      ++ +TGT+GK+S++ ++ Q        +  I
Sbjct: 80  VPNLAVPQLRARAGIVASHAYGEPSRAMTVIGITGTNGKTSISHWLAQAFSLLAHKAALI 139

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G           +   TTP P+ + + L+    QG   V++E SSHGLDQ R++G+    
Sbjct: 140 GTVGNGFYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFAT 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH + + Y  +K RLF     +   AII ADDA+ +E+         +
Sbjct: 200 AVFTNLTRDHLDYHGSMEEYGASKARLFHWEGLRH--AIINADDAFGRELAAGIDRQRTQ 257

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAI 325
            ++ G +   +  + + A  +  Q+T++    + +   PL G F   N L   A LC+  
Sbjct: 258 TVTYGLEQGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLLGRFNAANLLACLATLCVN- 316

Query: 326 GI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTI 379
           G+   D+A VL  ++      GR + +G    GG    + +DYAHT ++LE  L  +  I
Sbjct: 317 GVALKDAAAVLSRIQPAR---GRMQRLG----GGHEPLVVIDYAHTPDALEKALATLAEI 369

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                R+  VFGCGGDRD+GKRP+MG IA  +AD+A+VT DNPRSE+P+ I A+I  G+ 
Sbjct: 370 RPAGNRLYCVFGCGGDRDKGKRPMMGAIATRIADVAVVTSDNPRSEEPQAIIADIRAGMG 429

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             G +E  +R  AIR AI      D+++VAGKGHE    +  G K+   D  I  E L
Sbjct: 430 ETGHVE-ADRAAAIRWAIAAARAGDIVLVAGKGHEEYQDI-RGVKQPFSDFRIAEEAL 485


>gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
 gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
          Length = 483

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 164/480 (34%), Positives = 254/480 (52%), Gaps = 31/480 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  ++ DSR I  G +FVA+ G + DGH FI +AI  GA+A++       +D     
Sbjct: 20  EVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAKAVLC------EDMPENT 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V +T   +   A+  +G     +  + VTGT+GK++VA+ +  + ++ G   
Sbjct: 74  VEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLVGVTGTNGKTTVATLLYNMFRKMG--- 130

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++G  ST+ ++ +D  +    TTP PI L + L  +   G  +V +E SSH + Q R+ 
Sbjct: 131 HKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQKRIG 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+K   G FTNL RDH+DYH+T + Y NAK   F+  LPK++ AI  ADD  +  VM + 
Sbjct: 191 GLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDG-LPKDAFAITNADDK-NGMVMVQN 248

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A  +  S      F    ++   H  + + + V+G +    F   G+F V N L   G
Sbjct: 249 CKATIKTYSTRTMADF--RARIIECHF-EGMYLEVDGHEVGVQF--IGKFNVSNLLAVYG 303

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             I +G     VL  +  L  V GR E +  ++ G    +DYAHT ++LE +L  I  + 
Sbjct: 304 AAIMLGKKPEDVLVVMSTLKSVSGRLEPI-RSAEGVTAIIDYAHTPDALENVLSAIHEVL 362

Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +  GR+I V G GG+RD+GKRP+M   A+  +D  I+T DNPR E+P+ I  +++ G+  
Sbjct: 363 NGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVIITSDNPRFEEPQDIINDMLAGLNA 422

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 +   +R EAIRTA  M  K DV+++AGKGHE    +  G K    D +++REI 
Sbjct: 423 QQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKGHEDYQEI-KGVKHHFDDKEVVREIF 481


>gi|227113991|ref|ZP_03827647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 495

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 247/487 (50%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E+  DSR   AG +FVAIVG+K DG  +IPQAIAQG  AIV  +     D +    
Sbjct: 20  RALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAEGEAADGTVREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ + N  + LS  A R Y + P   L + G +G +   +  Q + Q S      +
Sbjct: 80  HGVPVVYLSNLNQRLSALAGRFY-QQPAEKLQLIGVTGTNGKTTTTQLLAQWSQ----AL 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + + + LS L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVDQGATFAAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH   ++Y  AK  LF E   +    +I ADD      + +
Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFSE--HRVGQMVINADDEVGLRWLAK 252

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        L  G +G+++   ++    N   V         +    L G F V N 
Sbjct: 253 LPDAVTVTMENNLVPGCRGRWLKATQIDYHDNGATVAFDSSWGHGEIESRLMGAFNVSNM 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +++G     ++    +L  V GR E     ++   + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLSLGYPLDKLIIAGSQLQPVCGRMEVFHAEAKP-TVVVDYAHTPDALEKALEA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G
Sbjct: 372 ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSG 431

Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +   ++ G       R EA+ +AI    + DV++VAGKGHE   +V N     S    + 
Sbjct: 432 L---LDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLDYSDRITVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|218703345|ref|YP_002410864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UMN026]
 gi|293403157|ref|ZP_06647254.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298378687|ref|ZP_06988571.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
 gi|218430442|emb|CAR11308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|291430072|gb|EFF03086.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298281021|gb|EFI22522.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
          Length = 495

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LSDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   + +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLSDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|331650982|ref|ZP_08352010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
 gi|284919865|emb|CBG32920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli 042]
 gi|331051436|gb|EGI23485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
          Length = 495

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        ++    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 488

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 242/469 (51%), Gaps = 23/469 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    AY ++  +  
Sbjct: 15  RDPLIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAV----AYEVEGSNVL 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
             ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V Q     G  
Sbjct: 71  PLTDVPLIPVKGLAAQLSDIAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQR 130

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              +G   T      Q  R TTP PI +   L+ L   G   V++E SSHGLDQ R   +
Sbjct: 131 CGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATAL 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD + +++      
Sbjct: 191 AFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFA--WPNLNCRVINLDDDFGRQMAGLKQE 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +     S      +++ ++     +  + T ++ +G+ F     L G F + N L A G 
Sbjct: 249 SRLITYSQLDSSAYLYCREAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNLSNVLAAVGA 307

Query: 322 CIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++LE +L+ +R  
Sbjct: 308 LL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPH 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPR+E   +I A+I  G    
Sbjct: 365 AKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGICVTDDNPRNESSSQIFADIRPGFTAA 424

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
               FIE   R +AI   I   +  DV+V+AGKGHE    ++   +  S
Sbjct: 425 DKVSFIE--GRAQAIAELIAGASADDVVVLAGKGHEDYQEISGQRQPFS 471


>gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 491

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG+ G  +    +R EAI  A+      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAVTKAKADDIIIIAGKGHETYQII 466


>gi|323975751|gb|EGB70847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           TW10509]
          Length = 495

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV+++AGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
 gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
          Length = 487

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 256/491 (52%), Gaps = 59/491 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR +  G +FVA+ G   DGH+FI +A+A GA+ +V       QD S  I   
Sbjct: 24  VHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVALGAKIVVCEQLP--QDLSGHI--- 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + V+N    L L A+  Y  +P     ++ VTGT+GK++VA+ + ++    G   F+
Sbjct: 79  -TYIQVENAGFALGLIAANFY-DNPSAKLKLVGVTGTNGKTTVATLLYKLFVELG---FR 133

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ +   +  +    TTP PI L + L  + + G  +  +E SSH + QHR+ G+
Sbjct: 134 VGLISTVQNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCFMEVSSHAVAQHRITGL 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----------DA 251
             + G FTNL  DH+D+H+T  AY  AK   F ++LPK + A++  D           DA
Sbjct: 194 SFVGGVFTNLTHDHLDFHKTFDAYLKAKKAFF-DMLPKSAFALVNIDDKNGSVMLQNTDA 252

Query: 252 YSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           Y K   +K   +   R++   + G  + +       + ++V I            L G F
Sbjct: 253 YKKTYGLKNIADFKGRIVESHFNGMLMQI-------DTREVWIR-----------LVGAF 294

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSL 369
             YN L    + I +  D+  VL  L +L    GRF+  V  N   G   VDYAHT +++
Sbjct: 295 NAYNLLAVYSVAILLEQDTTRVLTILSRLTGAEGRFDTLVSGNGVIG--IVDYAHTPDAV 352

Query: 370 EMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           E +L+ I  +   +  II V GCGGDRD+ KRP M  +A +L+D  I+T DNPRSEDP++
Sbjct: 353 ENVLRTIVDLRKNKEQIIAVLGCGGDRDKTKRPEMAAVAANLSDKVILTSDNPRSEDPQQ 412

Query: 428 IRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           I  E+  GIP   ++      +R EAI+ A+ +    D++++AGKGHE    V  GEK+ 
Sbjct: 413 IIREMEAGIPADKKRHVFSITDRYEAIKAAVHLAQPGDIVLIAGKGHEKYQEVM-GEKRP 471

Query: 483 SVDCDIIREIL 493
             D  I++++ 
Sbjct: 472 FDDKAILKDLF 482


>gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 494

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 165/470 (35%), Positives = 246/470 (52%), Gaps = 30/470 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++  DSR +  G +F+AI G++ DG  FI QA+AQGA AIV            TI   
Sbjct: 22  LTDIQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVAQGATAIVFEEDGEFVAPPLTI--- 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P + + +    LS  A   Y + P N   ++ +TGT+GKS+ A  V        L   +
Sbjct: 79  -PCIGIRDLPARLSELAGYFY-EQPANKLDLVGITGTNGKSTTALLV---ANWRTLLGGK 133

Query: 147 IGPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G   TI +  F +  +   TT S + +   L+ L  QG   V++E SSHGL QHR+  +
Sbjct: 134 AGVMGTIGNGLFGELVEAENTTGSAVQVQANLASLQQQGAALVAMEVSSHGLVQHRVAAL 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  FTNL RDH+DYH T +AY  AK  L +  L  E  A+I ADD   ++ +  A  
Sbjct: 194 PFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVDEPCAVINADDQLGRQWL--AAY 249

Query: 263 AGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            G    SV      + G+ +  +         +  I+    +     PL G F V N L 
Sbjct: 250 PGAVAFSVNGPIADHPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLLGRFNVSNVLA 309

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           A G  + +G D  ++L    +L  V GR E F G N+      VDYAHT ++LE  L+ +
Sbjct: 310 AMGAMLVLGYDFNVLLATAPQLQPVTGRMECFGGGNAP--LAVVDYAHTPDALEKALQAL 367

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    G++  + GCGGDRD+GKRP+M  +A   AD  I+TDDNPR+E+P +I A+++ G+
Sbjct: 368 RVHCEGQLWCLVGCGGDRDRGKRPMMAAMAEQHADRVILTDDNPRTEEPAQIMADMVAGL 427

Query: 437 --PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             P  ++ + +R++AI  A+   +KQD+++VAGKGHE   I+   ++  S
Sbjct: 428 RDPAAVQVEHDRVKAIALALGQASKQDIILVAGKGHEDYQIIGTDKRHYS 477


>gi|82775492|ref|YP_401839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae Sd197]
 gi|309787239|ref|ZP_07681851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
 gi|81239640|gb|ABB60350.1| meso-diaminopimelate-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924817|gb|EFP70312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
          Length = 495

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        ++    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALTTLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|157159417|ref|YP_001461255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209917278|ref|YP_002291362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218552668|ref|YP_002385581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI1]
 gi|218693554|ref|YP_002401221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 55989]
 gi|293476745|ref|ZP_06665153.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|331666322|ref|ZP_08367203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331680658|ref|ZP_08381317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
 gi|157081447|gb|ABV21155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209910537|dbj|BAG75611.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218350286|emb|CAU95969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli 55989]
 gi|218359436|emb|CAQ96974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|291321198|gb|EFE60640.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|323945714|gb|EGB41762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H120]
 gi|324118435|gb|EGC12329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1167]
 gi|331066533|gb|EGI38410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331072121|gb|EGI43457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
          Length = 495

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|323181782|gb|EFZ67195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1357]
          Length = 490

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 15  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 75  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 129

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 130 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 190 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 247

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 248 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 307

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 308 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 367 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 423

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 424 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 483

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 484 R-LLGVI 489


>gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
 gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
          Length = 1084

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 169/458 (36%), Positives = 239/458 (52%), Gaps = 29/458 (6%)

Query: 27   ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            +R I  ++ DSR ++ G +F A+ G K DG  FI  AIA GAEAIV  +A        T 
Sbjct: 613  DRDITHLTYDSRRVKPGTLFFALKGEKVDGTAFIDAAIAAGAEAIVTENA--------TF 664

Query: 87   RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143
            R+    +VV N R  ++ FA+  Y ++P   L    VTGT+GK++ A  ++ IC+ + L 
Sbjct: 665  RTRATNIVVANARNTMADFAAAFY-QNPARALKIAGVTGTNGKTTTAFLIKHICEAAQLR 723

Query: 144  SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
               +G     I         TTP  + + + L  + S G    ++E SSH L Q R+  +
Sbjct: 724  CGLLGTVRYEIGDRVLPASRTTPESLDVHEMLWQMRSAGCKACAMEVSSHALVQARVRDV 783

Query: 203  KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP---KESPAIIYADDAYSKEVMKR 259
            +  A  FTNL +DH+DYH+T +AYF AK R+F EL     K+  AII  DD Y  +++ R
Sbjct: 784  EFDAAIFTNLTQDHLDYHKTMEAYFEAKARMFSELAAQKKKQGKAIINLDDRYGAQLVTR 843

Query: 260  AHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A       +G    F         H      +   G+ +    PL G+F VYN+L A
Sbjct: 844  FGKAIPITTYGLGVHADFRASNVRIDFHGTS-YQLDAGGRSYLVRLPLIGQFNVYNSLAA 902

Query: 319  AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 A+GI+    +  L     VPGR E V    R  R++VDYAHT ++L  ++K  R 
Sbjct: 903  VAAANAMGIEVRNCVLALANATAVPGRLEAVPAQ-RQFRVFVDYAHTDDALLNVIKTCRE 961

Query: 379  ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            +   R+IVVFGCGG+RD+ KRP MG +    AD AIVT DNPR E+P      II  I  
Sbjct: 962  LNPARLIVVFGCGGNRDKTKRPRMGAVVDQHADHAIVTSDNPRKEEP----LAIIEDIKP 1017

Query: 439  FIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHE 470
             + +GN      R EAI  A+ M   +D++++AGKGHE
Sbjct: 1018 GMRRGNYEVIVDRREAIFKAVAMAQPRDIILIAGKGHE 1055


>gi|191167747|ref|ZP_03029554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
 gi|190902173|gb|EDV61915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
          Length = 495

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|110804149|ref|YP_687669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613697|gb|ABF02364.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 5 str. 8401]
          Length = 495

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 243/468 (51%), Gaps = 29/468 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|24111530|ref|NP_706040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 301]
 gi|30061652|ref|NP_835823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 2457T]
 gi|46577006|sp|Q83MG0|MURE_SHIFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24050288|gb|AAN41747.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039894|gb|AAP15628.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str.
           2457T]
 gi|281599447|gb|ADA72431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Shigella flexneri 2002017]
 gi|332762354|gb|EGJ92621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2747-71]
 gi|333010581|gb|EGK30014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri VA-6]
 gi|333022338|gb|EGK41576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-304]
          Length = 495

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 243/468 (51%), Gaps = 29/468 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 505

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 249/487 (51%), Gaps = 18/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+    P L N+    P    + ++N ++ DSR + AG +F A+ G+  DG  FI
Sbjct: 8   MKLEMLLS---PWLTNK--ALPQALSDCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFI 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI  GA AI+  +    QD    ++  T I+ + +  + LS  A R YG+  + +   
Sbjct: 63  DTAIQAGAVAIIAEADGIAQDGDIVLQDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALY 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++  + Q     G  +  +G T   + +  +    TT S I + + L+ L
Sbjct: 123 AVTGTNGKTTISQLLAQWANLIGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGL 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  +   A  FTNL RDH+DYH   Q Y +AK  LF E 
Sbjct: 183 VEQGADFAAMEVSSHGLVQGRVRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTE- 241

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHNKQQVTISV 295
                  II ADDA   E +    +A    +          LK        + Q VTI+ 
Sbjct: 242 -HDAGVPIINADDAVGAEWLHDLPHAVAVAIEPEAVANHTGLKLWATEVQFSTQGVTIAF 300

Query: 296 EGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +       F  PL G F V N L+A    +A     A +L    +L  V GR E V  ++
Sbjct: 301 DSSWGQGKFTAPLVGSFNVTNLLLALATLLATNHSMAELLAKASQLQAVIGRME-VFQDT 359

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M ++A  LAD  
Sbjct: 360 DKAMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQI 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+TDDNPRSEDP+ I A+++ G+          +R  A R A    + QD+++VAGKGHE
Sbjct: 420 ILTDDNPRSEDPKVIVADMLAGLTSPQSATVIHDRATACRHAFTHASHQDIILVAGKGHE 479

Query: 471 TVHIVTN 477
              I+ +
Sbjct: 480 DYQILAD 486


>gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
 gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
          Length = 514

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/475 (34%), Positives = 247/475 (52%), Gaps = 42/475 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS--- 83
           +R I  V +DSR + AG +F+A+ G + +G  F  QAI QGA A++  S  S+++ S   
Sbjct: 27  DRPIRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQGAVAVL--SEQSIEEPSLLE 84

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSG 141
           +       +L + +  + +S  ++R  G   H   I  VTGT GK+SVA F+ Q      
Sbjct: 85  SASAHQVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTDGKTSVAHFLAQ-----A 139

Query: 142 LSSFQIGPTSTISSFAQDN-------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           L++    P + + +    N       + TTP  + L +  S    QG+ HV++E SSHGL
Sbjct: 140 LTALNP-PVALVGTLGSGNLDQLHKTQNTTPGAVELQQLFSDFREQGIRHVAMEVSSHGL 198

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-- 252
           DQ R++G+       TNLGRDH+DYH++   Y +AK +LF +   K S  ++  DD +  
Sbjct: 199 DQGRVNGVAFDLAVLTNLGRDHLDYHRSMADYADAKRQLFYKSGLKAS--VLNCDDDFGC 256

Query: 253 --SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQ------QVTISVEGKDFDFL 303
             + E+ +R       V   G+ G     +      HN Q      +  +S  G+ +   
Sbjct: 257 MLALELEER-----LPVYGYGFDGDMSPQMTARVRGHNLQLTVDGLRFDVSSGGQRYTVD 311

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F   N L      +A+G+     +E + +L  VPGR E +   + G    VDYA
Sbjct: 312 VALMGRFNASNVLAVITSLLALGVPLPEAVEVVSRLQPVPGRMECLKLPN-GAVAVVDYA 370

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT  +LE  L ++R  + GR+  VFGCGGDRD+GKRP+MG+ A   +D   +TDDNPRSE
Sbjct: 371 HTPQALEQTLSSLREHSGGRLFTVFGCGGDRDKGKRPLMGRAAERFSDALWLTDDNPRSE 430

Query: 424 DPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            PE I  +I  G+  P    +  +R  AI+ A+E     DV+++AGKGHE+  +V
Sbjct: 431 KPEAIIDDICEGLDAPQLAHRIHSREAAIQAALESAAPGDVVLIAGKGHESEQVV 485


>gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 165/508 (32%), Positives = 259/508 (50%), Gaps = 48/508 (9%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +L+N+  + P+      + +I  +  DSR +  G +FV + G K DGH F  QAI +GA 
Sbjct: 99  KLLNEARVSPLSTEGDLDVEITGIQQDSRLVAPGDLFVCVKGLKSDGHQFAIQAIEKGAV 158

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGK 126
           AI+     SL + S T       ++V++T   LS  A  +YG HP    +++ +TGT+GK
Sbjct: 159 AII-----SLMEVSLT-EGLKAAVIVEDTSVILSALAGVIYG-HPSKKLSVVGITGTNGK 211

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRL----TTPSPIYLAKALSYLSSQG 181
           ++ +  +Q + +  GL   Q+G   TI  +    N+L    TTP  + L   ++ +   G
Sbjct: 212 TTTSYLLQSLYEAMGL---QVGLLGTIQYYIGGKNKLEADHTTPEALNLQNLMASMVQNG 268

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240
                +E SSHGL   R + I+     FTNL RDH+D+H+T++ Y  AK  LF +++ P+
Sbjct: 269 TEVCIMEVSSHGLVLGRCEDIEFDVAVFTNLTRDHMDFHKTEEEYRRAKGLLFAKMVDPE 328

Query: 241 ESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               ++  DD   S  V +   +       +G +   ++   V     + +V +     D
Sbjct: 329 RQRKVVNIDDPNVSYFVSQGNQDVPVVTFGMGDKSADVYPLAVKLSLVESEVLVRTPQGD 388

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G   VYN L A  + IA+G     ++  +E +  VPGR E +    +   + 
Sbjct: 389 VEISSRLLGRHNVYNILTAVAVGIAVGAPLEDIVRGIEAVDAVPGRCELI-DEGQTFAVL 447

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT +++  +L  +R     RII V GCGGDRD+GKRPIM KIA D +D+ I+T DN
Sbjct: 448 VDYAHTPDAVARLLDTVRECGPKRIITVLGCGGDRDKGKRPIMAKIAADKSDVCIITSDN 507

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLN 457
           PR+E P  I  +++ G+   +E+               G+R+       +AIR A+ M  
Sbjct: 508 PRTEKPLDIIDDMLAGVGWSMEQYCKWEEDSSYPLLPNGHRLFCQEIRSKAIRAAVAMAE 567

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           + D +V+AGKGHET  I+  GE K   D
Sbjct: 568 EGDAVVIAGKGHETYQII--GEIKGHFD 593


>gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 491

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAVILDDMVHGARGNNYEVIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466


>gi|187732212|ref|YP_001878895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
 gi|187429204|gb|ACD08478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
          Length = 495

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 251/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++ +  V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|194434409|ref|ZP_03066671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|194417325|gb|EDX33432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|320179647|gb|EFW54596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella boydii ATCC 9905]
          Length = 495

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|170021559|ref|YP_001726513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ATCC 8739]
 gi|188493001|ref|ZP_03000271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
 gi|169756487|gb|ACA79186.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli ATCC
           8739]
 gi|188488200|gb|EDU63303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
          Length = 495

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
          Length = 479

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 162/465 (34%), Positives = 243/465 (52%), Gaps = 37/465 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR I  G IFVA+ G   DGH FI  AI +GA+ I+VS     Q            
Sbjct: 24  MEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQ-------KGIGY 76

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145
           +++ N RK L + AS  YG   +NI  L VTGT+GK++    ++Q+       R G   +
Sbjct: 77  VLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEY 136

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG     +        TTP  + L + +     QG+ ++ +E SSH L+  R++ ++  
Sbjct: 137 KIGKEVIEAPN------TTPESLDLVRMIKKAYDQGLEYIIMEVSSHALELGRVNMLEFD 190

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL  DH+DYH+T + YF AK +LF +L  K +  ++  DD Y + + +  H    
Sbjct: 191 GAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-AIKVLNVDDEYGRRLQEEFHGISY 249

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  QGK +  +       K++V +S+ GK  +    + G F +YN L +  L   +
Sbjct: 250 GTKQAEVQGKILGFE-----GGKEKVELSLFGKKKECKIQILGGFNLYNLLGSIALVKEL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    +   +E L   PGRFE V    +   + +DYAHT ++LE IL+ I+ I + +II
Sbjct: 305 GMSEEEIFAKVELLQGAPGRFETVDC-GQDYMVVIDYAHTGDALENILQAIQEIKTKKII 363

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN- 444
            +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+PE I  E+     GF ++ + 
Sbjct: 364 TIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEEV---KGGFTKENHI 420

Query: 445 ----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               R EAI   I    K D++++AGKGHET  I+  G KK   D
Sbjct: 421 CVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQIL--GRKKYHFD 463


>gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 487

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 165/478 (34%), Positives = 243/478 (50%), Gaps = 26/478 (5%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   +F    R+  I E++ DSR+++ G +F+A+ G   DG   I  A+ +GA A+    
Sbjct: 4   NLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFV 133
           AY ++       ++ P++ V      LS  A R YG    +++   VTGT+GK+SV   V
Sbjct: 60  AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLILVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF  L  K    +I  DD +
Sbjct: 180 GLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWLDLKCR--VINLDDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQ 311
            +E+      +     S      +++ +      +  + T ++ +G+ F     L G F 
Sbjct: 238 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++L
Sbjct: 297 LSNVLAAVGALL--GLDYALDEILKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDAL 353

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I 
Sbjct: 354 EKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIF 413

Query: 430 AEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            +I    PGF+          R +AI   I   N  DV+V+AGKGHE    + NG+++
Sbjct: 414 DDI---RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQ 467


>gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
 gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
          Length = 491

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 252/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +F+ + G   D H F  QA AQGA AIV
Sbjct: 6   LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+ +DD  ++E M+   +    V++ G      I  + +         T+    +  +  
Sbjct: 237 ILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGNVYCIVGCGGDRDRTKRPIMASVAAEYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP+ I  ++++G  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPKAILDDMVNGANGNNYEVIIDRKEAIHCAIAKAKDADIIIIAGKGHETYQII 466


>gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
 gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
          Length = 491

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|253689958|ref|YP_003019148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756536|gb|ACT14612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 495

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 247/487 (50%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVAIVG+K DG  +IPQAIAQG  AIV  +     D +    
Sbjct: 20  RALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGVAAIVAEAEGEAADGTVREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ + N  + LS  A R Y + P   L + G +G +   +  Q + Q S      +
Sbjct: 80  HGVPVVYLSNLNQRLSALAGRFY-QQPAEKLQLIGVTGTNGKTTTTQLLAQWSQ----AL 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + + + LS L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVDQGATFAAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH   ++Y  AK  LF +   +    II ADD      + +
Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFAD--HRVGQMIINADDEVGLRWLAK 252

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        L  G +G+++   ++    N   +         +    L G F V N 
Sbjct: 253 LPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIESRLMGAFNVSNM 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +++G     ++    +L  V GR E      +   + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLSLGYPLDKLVIAGAQLQPVCGRMEVFHAEGKP-TVVVDYAHTPDALEKALEA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G
Sbjct: 372 ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSG 431

Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +   ++ G       R EA+ +AI    + DV++VAGKGHE   +V N     S    + 
Sbjct: 432 L---LDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLDYSDRITVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|238752427|ref|ZP_04613904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
 gi|238709360|gb|EEQ01601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
          Length = 471

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 237/479 (49%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+V  +     D S       P++ +
Sbjct: 4   DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            N  + LS  A + Y   P   L++ G +G +   +  Q + Q S      +G TS +  
Sbjct: 64  RNLNQHLSTLAGQFY-HQPGAALSLVGVTGTNGKTTTTQLLAQWSQ----ALGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A 
Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  AK  LF     +    II ADDA  +  + +   A    
Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFSTHQAEHK--IINADDAVGRRWLSQLPQAVAVS 236

Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +      G+QG ++  ++V    N   +       +      L G F V N LVA    +
Sbjct: 237 MEGNIPTGWQGPWLSTREVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G     +L     L  V GR E      +   + VDYAHT ++LE  L   R    G+
Sbjct: 297 ALGYPLTQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKR +MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+   ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRSLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412

Query: 444 ------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
                  R EA+ +AI    + DV+++AGKGHE   +V N     S    + R +LG++
Sbjct: 413 RAQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVM 470


>gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 524

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 166/496 (33%), Positives = 242/496 (48%), Gaps = 42/496 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ DSR ++ G  F+A  G K DG  FIP AI +GA A+V    +    F+     
Sbjct: 31  RMEHLAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVV----WERDGFAWDPEW 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            TP L V + +      A  LY  HP     ++ VTGT+GK+S + ++ Q        + 
Sbjct: 87  KTPNLPVPDLKSEAGFIADYLY-DHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAA 145

Query: 146 QIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            IG     + F  +      TTP  + L   ++    +G   V++E SSHG+ Q R++G 
Sbjct: 146 VIGTLG--AGFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSHGIVQGRINGA 203

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TNL RDH+DYH T + Y  AK RLF     K   A++  DD +  +++     
Sbjct: 204 TFAVAMLTNLSRDHLDYHGTMEVYAAAKARLFHWRGLKY--AVLNLDDVFGMQLLHDLEG 261

Query: 263 AGCRVLSVGYQ---------GKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            G  ++  G+          G F  +  + + A     +  I  EG+   F   + G F 
Sbjct: 262 TGTGMIGYGFTDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFN 321

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L      +A GI     +  L+K+  V GR + +G       I VDYAHT ++LE 
Sbjct: 322 ASNLLGVLATLLASGIAFPEAVRALQKVQPVAGRMQQIGGEGDEPLIVVDYAHTPDALEK 381

Query: 372 ILKNIRTIT------------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +L  +R               SGR++ VFGCGG+RDQGKRP+MG++A  LAD AI+T DN
Sbjct: 382 VLTTLREAVDAGFPGGKPETGSGRLVCVFGCGGERDQGKRPLMGEVATRLADEAIITSDN 441

Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSEDP+ I   I  G      IEK +R  AI  AI   +K DV+++AGKGHET      
Sbjct: 442 PRSEDPDSIIRGIAVGAAANHRIEK-DRAAAIHRAIRGTHKGDVVLIAGKGHETWQ-EAG 499

Query: 478 GEKKMSVDCDIIREIL 493
           G+K    D ++ R+ L
Sbjct: 500 GKKFPFSDAEVARKAL 515


>gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 491

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 153/467 (32%), Positives = 230/467 (49%), Gaps = 41/467 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I++++ DSR ++ G +F+ I G   DGH F  +A   GA AI+            T+  
Sbjct: 22  EIDQIAQDSRKVKPGTLFICIDGELVDGHQFAKRAEELGAVAIIAEK---------TVDV 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V+  V+QI + +G  +  
Sbjct: 73  TVPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGL 132

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I     + + TTP  + L +    +   GV+   +E SSH L Q R+ G    
Sbjct: 133 IGTMYRKIGDQILETKNTTPDSLTLQETFRNMLMNGVSTAVMEVSSHALVQGRVYGSDYD 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260
              F NL +DH+DYH T + Y  AK  LF +L           A+I  DDA S   M+ A
Sbjct: 193 VAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKVAVINIDDAESSR-MQTA 251

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311
             A      +  Q  F              + I+  G  FD   P         + G F 
Sbjct: 252 TAAHVITFGIKKQADF----------RASNIKIASHGSTFDLRTPVGNFTLKIKMIGNFS 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYN L A     A+ I     +  +E +  V GRFE V    +   + VDY+HT +SL  
Sbjct: 302 VYNVLAAIATSFALKIPINNAIATVEDIPGVKGRFELVSA-GQDFPVIVDYSHTPDSLLN 360

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ I      R+ V+ GCGGDRD+GKRP M KIA+D A   I T DNPRSE+P  I  +
Sbjct: 361 VLQTIDEFAEKRVFVIVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPHAIIED 420

Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +I G+P    ++   NR +AIR A+      DV+++AGKGHE   I+
Sbjct: 421 MIQGVPESDSYVVHENRRDAIRFAVNEAETGDVILIAGKGHEDYQII 467


>gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           reducens MI-1]
 gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfotomaculum reducens MI-1]
          Length = 486

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 169/470 (35%), Positives = 242/470 (51%), Gaps = 28/470 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  +  DSR    G IFVA+ G + DGH +I  A+A G  A+V  +   L      +
Sbjct: 20  EIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYIENAVAAGVTAVVYETEIVLPTGVTGV 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +       V ++RK L+L A + YG HP   L++ G +G +   +    I      +  +
Sbjct: 80  Q-------VSDSRKALALMADQFYG-HPSKKLSMVGVTGTNGKTTTTHLIAAIWRKARVK 131

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G   TI +   +  L    TTP  + L K L+ +  +GV  V++E SSH L  +R+ G+
Sbjct: 132 PGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQMLDEGVKGVAMEVSSHALALNRVAGV 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTN+ +DH+D+H T + Y  AK +LF   +     AII ADD  ++E+ K +  
Sbjct: 192 NYDVAVFTNITQDHLDFHNTMEEYLAAKAKLFTTDI---QYAIINADDPAAEELKKISRG 248

Query: 263 AGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              +V + G  Q   I  K +           S    +      L G F VYNAL A   
Sbjct: 249 ---KVYTYGIDQAADIRAKDIQVTARGVSFMASGPWGNHQLNLKLTGRFNVYNALAAYTT 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A+G  S  V+  LE +  V GRFE +    +   + VDYAHT + LE IL   R IT 
Sbjct: 306 GMALGFGSDTVVSALEDVPGVAGRFELL-DKGQNFAVVVDYAHTPDGLENILTTARQITK 364

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR+I VFGCGGDRD+ KRPIMG+IA   +D+ +VT DNPR+E+P+KI  +++ G+   I 
Sbjct: 365 GRLITVFGCGGDRDRTKRPIMGEIAARYSDVPVVTSDNPRTEEPQKIIQDVVEGVNRVIA 424

Query: 442 KG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                   +R EAI  AIE+  + DV+V+AGKGHE   I+  G  K S D
Sbjct: 425 PEDYLVLVDRREAINKAIELAQEGDVVVIAGKGHEDYQII--GTTKYSFD 472


>gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
 gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
          Length = 491

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 247/476 (51%), Gaps = 29/476 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DDA + E M R+  A      +G     +  K +         T+    +  +   
Sbjct: 237 VLNNDDAVTAEYM-RSTAATVVTYGIGTTSDVM-AKDIVMTSGGTTFTLVTPYESVNVTM 294

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361
            L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   VD
Sbjct: 295 KLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV----DGGQNYTVIVD 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPR
Sbjct: 351 YAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPR 410

Query: 422 SEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           SEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 411 SEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|16128078|ref|NP_414627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|89106968|ref|AP_000748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K-12 substr. W3110]
 gi|170079724|ref|YP_001729044.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238899486|ref|YP_002925282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|127538|sp|P22188|MURE_ECOLI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|581032|emb|CAA38862.1| UDP-MurNac-tripeptide synthetase (MurE) [Escherichia coli]
 gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|21321966|dbj|BAB96653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K12 substr. W3110]
 gi|169887559|gb|ACB01266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863753|gb|ACR65751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|260450708|gb|ACX41130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli DH1]
 gi|315134779|dbj|BAJ41938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli DH1]
          Length = 495

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  S +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
 gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
          Length = 488

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 256/493 (51%), Gaps = 46/493 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L       L +  S  P+      I  +  DSR ++ G +FV I G   DGH F 
Sbjct: 1   MKLQTL-------LQHLHSFTPLATENPTITSIEMDSREVKQGSLFVCIKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            QA+A+GA A+V     +L           P++ V+++R+ L++ A   YG+  H  +++
Sbjct: 54  EQAVARGAVAVVAEKPLALP---------VPVIYVNDSRRALAVLADAFYGQPTHQLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    +++IC+ +G  +  IG  +  I     D + TTP  + L      +
Sbjct: 105 GVTGTNGKTTTTHLIERICRHAGKKTGLIGTINMKIGDDTYDVKNTTPESLVLQNMFRKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V  V++E SSH L   R+ G       FTNL +DH+DYH+T + Y  +K  LF +L
Sbjct: 165 VDAHVDIVAMEVSSHALHMGRVHGCDFDVAVFTNLTQDHLDYHRTMEHYRWSKGLLFAQL 224

Query: 238 ---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                 + P  AI+ ADDA S+E  K   +    V++ G      H   + A    +Q+ 
Sbjct: 225 GNRFDHQRPKFAILNADDAASEEYKK---STAATVVTYGIH----HKSDIMA----KQIE 273

Query: 293 ISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           I+  G  F  + P         L G F VYN L A   C+   I  + ++E +  +  VP
Sbjct: 274 ITTSGTTFQLITPIETVQVKTKLIGMFNVYNLLAAVAACLVSNIPLSTIVEAIADIEGVP 333

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GRFE V    +   + VDYAHT +SLE +L+ IR     R+ VV GCGGDRD+ KRP+M 
Sbjct: 334 GRFEVVDA-GQPFTVIVDYAHTPDSLENVLQTIRQFAKKRVFVVVGCGGDRDRTKRPLMA 392

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
           +IA+  +D+ I T DNPRSEDP  I  ++  G+    +   +R EAI  AIE   K D++
Sbjct: 393 QIAVKYSDVPIFTSDNPRSEDPLVILNDMKQGVAEDVVCIVDRKEAITYAIEQAEKDDII 452

Query: 463 VVAGKGHETVHIV 475
           ++AGKGHET  I+
Sbjct: 453 LIAGKGHETYQII 465


>gi|320197464|gb|EFW72078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli WV_060327]
          Length = 495

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 170/484 (35%), Positives = 249/484 (51%), Gaps = 24/484 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +
Sbjct: 195 AALKFTASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N     S    + R +
Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490

Query: 493 LGLI 496
           LG+I
Sbjct: 491 LGVI 494


>gi|218687962|ref|YP_002396174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ED1a]
 gi|218425526|emb|CAR06309.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli ED1a]
          Length = 495

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 170/484 (35%), Positives = 249/484 (51%), Gaps = 24/484 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNEPLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N     S    + R +
Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490

Query: 493 LGLI 496
           LG+I
Sbjct: 491 LGVI 494


>gi|82542689|ref|YP_406636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii Sb227]
 gi|81244100|gb|ABB64808.1| meso-diaminopimelate-adding enzyme [Shigella boydii Sb227]
 gi|320183628|gb|EFW58471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella flexneri CDC 796-83]
          Length = 495

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 251/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++ +  V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTVPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|145223570|ref|YP_001134248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315443917|ref|YP_004076796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
 gi|145216056|gb|ABP45460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315262220|gb|ADT98961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
          Length = 512

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 166/453 (36%), Positives = 242/453 (53%), Gaps = 18/453 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+   +H QAG +F A+ G+K  G  +   A+ +GA A V++ A  + + +A    
Sbjct: 34  QVTGVTLRGQHAQAGDLFAALPGSKAHGARYAADAVERGAVA-VLTDADGVSEIAAHGGP 92

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             PILV    R  L   A+ ++G+  E+  ++ VTGTSGK++    V+   + +G  +  
Sbjct: 93  AVPILVHPAPRSVLGEVAAAVFGRPSEHLRVIGVTGTSGKTTTTYLVEAGLRSAGRVAGL 152

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I   AQ   LTTP    L   L+ +  QGV  V +E SSH L   R+DG+   
Sbjct: 153 IGTVGVRIDGRAQPGGLTTPEAPDLQALLAAMLEQGVDTVVMEVSSHALTLGRVDGVSFA 212

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAG 264
            G FTNL RDH+D+H T Q YF AK RL +   P  +  ++I  DD + + +  RA +A 
Sbjct: 213 VGGFTNLSRDHLDFHPTMQDYFEAKARLVDPTSPTHAARSVICVDDEWGRAMAARA-DAP 271

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLC 322
             V   G    ++  ++V A+    Q  ++V+  G        LPG + V N L+A  L 
Sbjct: 272 VTVSVTGDADWWV--QEVRALDGGVQDFLAVDPAGVHHALEIGLPGGYNVANCLLAVALL 329

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTIT 380
            A+ +        L     VPGR E V    RG      VDYAH   +L  +L+ +R   
Sbjct: 330 DAVDVSPEQAAPGLRDA-TVPGRLEAV---DRGQPFLALVDYAHKPGALAAVLQTLREQC 385

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF- 439
           +GR+ VVFG GGDRDQGKR  MG++A +LAD+ +VTDDNPR EDP  IRA I+ G  G  
Sbjct: 386 AGRLAVVFGAGGDRDQGKREPMGRVAAELADLVVVTDDNPRGEDPAVIRAAILRGASGAQ 445

Query: 440 -IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +E G+R  AI  A++   + D++++AGKGHE 
Sbjct: 446 TVEIGDRRAAIVHAVQWAREGDIVLIAGKGHEA 478


>gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 496

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 251/472 (53%), Gaps = 49/472 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR ++  ++FVAI G + DGH +I +A+ +GA A+V+     L          
Sbjct: 23  VEGIAYDSRQVRPRFLFVAIKGFRADGHEYIGEALERGALAVVMERRVELP-------PG 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               +V + R+ L+L ++R YG +P     ++ VTGT+GK++  S +  I   +G    +
Sbjct: 76  VAWALVPDARRALALLSARFYG-NPSFKMKLIGVTGTNGKTTTTSLIADILAGAGC---R 131

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   T+++   D  L    TTP    L + L  +  + V    +E SSH L  HR+DG 
Sbjct: 132 VGLIGTVNNRIGDRVLPVKHTTPESADLQQLLHEMVIEKVDACVMEVSSHALALHRVDGS 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVM 257
           +     FTNL +DH+D+H+  + Y  +K++LF+ L       +   A+I ADD ++ + +
Sbjct: 192 EFDLAVFTNLTQDHLDFHRDMEDYLESKLKLFKWLGRPGHKREAGIAVINADDPHAGQFI 251

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPG 308
           +    AG  V + G         K  A    + ++I   G  F              + G
Sbjct: 252 R---AAGGTVYTYGI--------KNAADVRAESISIGARGACFGVAGKWGRLRLDLRITG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F VYNAL A     A+G+ +  + E LEK    PGRFE V +      + VDYAHT + 
Sbjct: 301 LFNVYNALAAFTASAAMGVPAEEIKEALEKARGAPGRFEMVDSGQDFA-VVVDYAHTPDG 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE ILK  R IT GR+I VFGCGGDRD+ KRP+MG IA   +D AI+T DNPR+EDP KI
Sbjct: 360 LENILKTARKITEGRLITVFGCGGDRDRTKRPLMGGIAARYSDFAIITSDNPRTEDPLKI 419

Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             EI  G+       ++ + +R +AIR A+EM  + DV+V+AGKGHE   I+
Sbjct: 420 IKEIEEGMKTAGWERYVTEPDRRKAIRLAVEMARRGDVVVIAGKGHEDYQII 471


>gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 550

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%)

Query: 13  ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA+
Sbjct: 62  QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAK 121

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK+
Sbjct: 122 IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 172

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           +V   ++QI +    ++  IG   T+    +D +L    TTP  I   + L+ +   GV 
Sbjct: 173 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 229

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K S 
Sbjct: 230 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 289

Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++  DD   +E  +        VL+ G         K  A+ N Q V I   G
Sbjct: 290 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 338

Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +FD             L G+F VYN L A     A GI    +++ LEK+  V GRF+ 
Sbjct: 339 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 398

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +++ G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++
Sbjct: 399 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 457

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AG
Sbjct: 458 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 517

Query: 467 KGHETVHIV 475
           KGHE   I+
Sbjct: 518 KGHEDYQII 526


>gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 487

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 242/479 (50%), Gaps = 26/479 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++       ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DD 
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSDLKCRVINLDDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAAIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKALPKLEGPVGRMQRLGGAEKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASI 412

Query: 429 RAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             +I    PGF+          R +AI   I   N  DV+V+AGKGHE    + NG+++
Sbjct: 413 FDDI---RPGFVAVDKVRFVEGRGQAIAELIAGANADDVVVLAGKGHEDYQEI-NGQRQ 467


>gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
 gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
          Length = 493

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%)

Query: 13  ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA+
Sbjct: 5   QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAK 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK+
Sbjct: 65  IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           +V   ++QI +    ++  IG   T+    +D +L    TTP  I   + L+ +   GV 
Sbjct: 116 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K S 
Sbjct: 173 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 232

Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++  DD   +E  +        VL+ G         K  A+ N Q V I   G
Sbjct: 233 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 281

Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +FD             L G+F VYN L A     A GI    +++ LEK+  V GRF+ 
Sbjct: 282 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 341

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +++ G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++
Sbjct: 342 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 400

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AG
Sbjct: 401 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 460

Query: 467 KGHETVHIV 475
           KGHE   I+
Sbjct: 461 KGHEDYQII 469


>gi|110640298|ref|YP_668026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|191174585|ref|ZP_03036079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|306815317|ref|ZP_07449466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|331661131|ref|ZP_08362063.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
 gi|110341890|gb|ABG68127.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|190905132|gb|EDV64777.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|222031916|emb|CAP74654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Escherichia coli LF82]
 gi|305850979|gb|EFM51434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|312944691|gb|ADR25518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|331052173|gb|EGI24212.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
          Length = 495

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 170/484 (35%), Positives = 249/484 (51%), Gaps = 24/484 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N     S    + R +
Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490

Query: 493 LGLI 496
           LG+I
Sbjct: 491 LGVI 494


>gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
 gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
          Length = 492

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 250/477 (52%), Gaps = 42/477 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL++QL+   +Q      + V+ DSR +Q G +F+A  G+  DG  +I  A+A+GA A++
Sbjct: 6   ELLDQLAAMGIQ-----PSGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALARGAVAVL 60

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSV 129
              +      S    +N P+  +   R      A  +YG HP    +++A+TGT+GK+++
Sbjct: 61  WQPSADFSWDSTLATANLPVAAL---RPLAGPLAHAVYG-HPSEGLSLIAITGTNGKTTI 116

Query: 130 ASFVQQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  + Q   +       +G   P S I     +   TTP    L + L+   ++     +
Sbjct: 117 SQCIAQAYPKPCAIIGTLGAGFPDSLI-----ETGFTTPEATTLMRYLADFRARNAAACA 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASS G+++ R++G ++    FTN  RDH+DYH T +AY  AK +LF    P+   AII
Sbjct: 172 LEASSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAYAEAKEKLFH--WPRLRTAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD +   +M+       RVL  GY  G+    +   A+   + +  +  G+ F+ + P
Sbjct: 230 NLDDEFGLNLMR--ETTAMRVL--GYAIGE--ARRDFPALVRAENLVDTPFGQRFNLVLP 283

Query: 306 ---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L G + + N L  A +    G+ +A V   L +L   PGR E +G N    
Sbjct: 284 NGRVAVDTTLVGRYNISNLLAVAAVLHDAGLAAADVAIRLSELTPPPGRMERLGGNGEP- 342

Query: 357 RIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            + VDYAHT ++LE     L+++ T  +GR+ VVFGCGGDRD+GKRP MG +A  LAD  
Sbjct: 343 LVVVDYAHTPDALENALTALRDVATTRAGRLSVVFGCGGDRDKGKRPQMGALAERLADRV 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT+DNPRSE P  I  EI  G+     + +R  AIR A+     QDV+++AGKGHE
Sbjct: 403 LVTNDNPRSEAPHVIINEITSGMTRAEVEADRATAIRRAVLEAGDQDVILLAGKGHE 459


>gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%)

Query: 13  ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA+
Sbjct: 5   QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAK 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK+
Sbjct: 65  IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           +V   ++QI +    ++  IG   T+    +D +L    TTP  I   + L+ +   GV 
Sbjct: 116 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K S 
Sbjct: 173 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 232

Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++  DD   +E  +        VL+ G         K  A+ N Q V I   G
Sbjct: 233 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 281

Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +FD             L G+F VYN L A     A GI    +++ LEK+  V GRF+ 
Sbjct: 282 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 341

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +++ G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++
Sbjct: 342 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 400

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AG
Sbjct: 401 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 460

Query: 467 KGHETVHIV 475
           KGHE   I+
Sbjct: 461 KGHEDYQII 469


>gi|215485251|ref|YP_002327682.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263323|emb|CAS07638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Escherichia coli O127:H6 str. E2348/69]
          Length = 495

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 242/465 (52%), Gaps = 23/465 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|293417961|ref|ZP_06660583.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
 gi|291430679|gb|EFF03677.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
          Length = 495

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 242/468 (51%), Gaps = 29/468 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        ++    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 487

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 254/478 (53%), Gaps = 33/478 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++  DSR I A  +FVAI G   DGH FI  A+A GA  +V       ++  + +   
Sbjct: 24  IKKIHFDSRLISAQDVFVAIKGETADGHAFIEAAVANGANVVVC------EELPSEVIPE 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V + R+ L++ AS  Y     N+  + VTGT+GK++V S + Q+ +  G   +++
Sbjct: 78  VSYIQVKDCREALAVMASNYYDNPSANLKLIGVTGTNGKTTVTSLLYQMFKTLG---YKV 134

Query: 148 GPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  ST+     D     +LTTP  + +   L  ++  GV    +E SSHG+ QHR  G+ 
Sbjct: 135 GLISTVVIKVDDKDYPTKLTTPDSLTINSYLKEMNEVGVEFCFMEVSSHGIAQHRTLGLN 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL +DH+DYH+T   Y + K R F++ L K+  A+   DD     +++     
Sbjct: 195 FEGGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQ-LSKKGFALTNVDDKNGNYMLQNT--- 250

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +  + GY  K +   KV  +      + +++ G +    F   G+F  YN L    + 
Sbjct: 251 --KAKTFGYGVKNLTDYKVKILEKSFSGLKLNINGTEVWSRF--IGDFNAYNLLAVYAVA 306

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--T 380
             + +     L++L +L  V GR++    +S G  + VDYAHT ++L+ +L+    I   
Sbjct: 307 DLLEVKDIENLQNLSQLKPVEGRYQH-HMSSTGIHVIVDYAHTPDALQNVLQTTNDIRSR 365

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439
           S  +I V GCGGDRD  KRP+MGKIA +L+   I+T DNPR+EDP+ I  +I  G+ P  
Sbjct: 366 SEELITVVGCGGDRDTTKRPLMGKIAGNLSTKVILTSDNPRTEDPDSIIKDIEKGVEPQD 425

Query: 440 IEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + K     +R +AI+TA  +  ++D++++AGKGHET   + NG +    D  I++E+L
Sbjct: 426 VSKTLSITSRQQAIKTACILAQQRDIILIAGKGHETYQEI-NGIRSDFDDLKIVKELL 482


>gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 550

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%)

Query: 13  ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA+
Sbjct: 62  QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAK 121

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK+
Sbjct: 122 IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 172

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           +V   ++QI +    ++  IG   T+    +D +L    TTP  I   + L+ +   GV 
Sbjct: 173 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 229

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K S 
Sbjct: 230 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 289

Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++  DD   +E  +        VL+ G         K  A+ N Q V I   G
Sbjct: 290 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 338

Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +FD             L G+F VYN L A     A GI    +++ LEK+  V GRF+ 
Sbjct: 339 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 398

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +++ G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++
Sbjct: 399 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 457

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AG
Sbjct: 458 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 517

Query: 467 KGHETVHIV 475
           KGHE   I+
Sbjct: 518 KGHEDYQII 526


>gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 499

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 179/490 (36%), Positives = 259/490 (52%), Gaps = 47/490 (9%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  L I      ++  +  +  DSR IQ+G++FVAI G K DGHL+I  A+ +GA A+
Sbjct: 5   ELVAPLKIIARGGNQQVPLTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERGAVAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128
           V++   +L    A +R       VD+TR  L   A+R Y  +P     ++ VTGT+GK++
Sbjct: 65  VLAQERTLPPGVAWVR-------VDDTRLALGQLAARFY-DYPSRKLRLIGVTGTNGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184
               +Q I +  G  +  +G   TI +   D  L    TTP  + L   L  + S     
Sbjct: 117 TTHLIQAILEAGGRPAGLVG---TIGNRLGDRVLPAEHTTPESLDLQHLLYQMVSLQARA 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--KES 242
           V +E SSH L  HR+ G +     FTNL +DH+D+H   + YFN K RLF+ L    K  
Sbjct: 174 VVMEVSSHALALHRVAGTEFDVAVFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAG 233

Query: 243 P--AIIYADDAYSKE--------VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           P  A+I  DD Y           V+      GC+V     + + IHL+            
Sbjct: 234 PKYAVINGDDPYGSRLAALTPVPVVTYGCTPGCQV-----RARDIHLET-----GGSTSL 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++  G +      L G + +YNAL A  + +  GID  + +  L +   VPGR E V   
Sbjct: 284 VTWPGGEAAMELRLTGRYNIYNALAALAVALQEGIDPQVAIRALGRFKGVPGRLERV-DQ 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT + LE +L+  R +T GR++VVFGCGGDRD+GKRP+MG+ A  L+D 
Sbjct: 343 GQPFTVVVDYAHTPDGLENVLRAARQVTRGRLLVVFGCGGDRDRGKRPLMGRAAARLSDY 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG---IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +I+T DNPRSEDPE I A+I+ G   +PG  +    +R  AI  A+ +    D++V+AGK
Sbjct: 403 SIITSDNPRSEDPEAIIADILPGVREVPGASYQVLVDRRRAIAAALALARPGDMVVIAGK 462

Query: 468 GHETVHIVTN 477
           GHET  IV +
Sbjct: 463 GHETYQIVKD 472


>gi|254281947|ref|ZP_04956915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
 gi|219678150|gb|EED34499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
          Length = 484

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 162/473 (34%), Positives = 244/473 (51%), Gaps = 28/473 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  K   ELI+     P +     I++++ DSR +  G +FVA+ G + DG  FI     
Sbjct: 3   LAVKSLAELID----VPAELGSVAISDITLDSRAVAPGAVFVAMPGGESDGRGFID---- 54

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123
              +A+   +A  L +     + +  ++ V   R      A R +G       ++AVTGT
Sbjct: 55  ---DALRAGAAAVLAEADGLAQQHPKVIAVPALRSRCGDIARRGFGDVSARMALVAVTGT 111

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +GK+S+A    Q+ +  G+ +  IG     T+T+++ A +   TTP    L + L+   +
Sbjct: 112 NGKTSIADITAQLLRGLGVKTGTIGTLGSRTNTVAATAVN---TTPDVFTLHRTLAAWHA 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + + HV +EASSH L Q RL G+ L  G FTNL RDH+DYH+ ++AY  AK+RLF +  P
Sbjct: 169 EDIDHVVLEASSHALSQERLAGLTLRTGIFTNLSRDHLDYHEDERAYLAAKLRLFSDY-P 227

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGK 298
            +  AI  ADD  + EV   A    C  L +        +  +   + +   +T+     
Sbjct: 228 LQY-AIYNADDPMASEVRTVAS---CPTLGISMSSAEADVFAQFEVLQSGLNITLHAPYG 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G F  +N + A      +G D   V+  L  L  VPGR + V +      +
Sbjct: 284 TASAETPLSGTFNAFNVVAAVMAATTLGYDFEQVMALLPTLKTVPGRMQRVASPQELA-V 342

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT  +L + ++ +R   +G + +VFGCGGDRD+GKR  MG+IA  LAD  +VT D
Sbjct: 343 VVDYAHTPEALAVAIEALRPGCTGELWLVFGCGGDRDRGKRAQMGRIAATLADRVVVTSD 402

Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSE PE+I  +I+ GI G  +   +R  AI  A+      DV+++AGKGHE
Sbjct: 403 NPRSEAPERIIDDILKGIDGPAVVVEDRRGAIMHALGAARPGDVVLIAGKGHE 455


>gi|15799769|ref|NP_285781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 EDL933]
 gi|12512788|gb|AAG54389.1|AE005185_6 meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
          Length = 495

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 249/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y +  +N+  V  T   +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFYHEPSDNLXXVGVTG-TNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  Q  T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G      +R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 490

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 242/485 (49%), Gaps = 50/485 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           INEV  DSR      +FVA+ G + DGH FIPQ +  G  A+VV           TI  N
Sbjct: 29  INEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQAGISALVVE----------TIPEN 78

Query: 90  TP----ILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
            P    I+ V N+ + L   AS  Y +HP +   ++ VTGT+GK++  + +  +   SGL
Sbjct: 79  VPDQVTIVQVANSAQALGFLASAFY-EHPSHQLTLVGVTGTNGKTTTVTLLYDLF--SGL 135

Query: 143 SSFQIGPTSTISSFAQDNRL---------TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             ++ G  ST+     +NR+         TTP  + +   L+ +   G  +  +E SSH 
Sbjct: 136 G-YKCGLLSTV-----ENRIASQVIASTHTTPDAVAINALLAQMVEAGCEYAFMEVSSHA 189

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +DQ R+ G+      FTN+  DH+DYH T   Y  AK   F++L  K + A++  DD   
Sbjct: 190 VDQGRIAGLDFKGAIFTNITHDHLDYHLTFDNYIRAKKSFFDQL-SKRAFALVNIDDKRG 248

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             VM +   A     S+    +F    +   I N     + ++  + DF   L GEF  Y
Sbjct: 249 M-VMTQNTAASVNRYSLRQMAEF----RARIIENSL-TGLHLDIDNQDFYGRLIGEFNAY 302

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L      + +  D    L  L +L    GRF++V    R     VDYAHT ++LE +L
Sbjct: 303 NLLAVYATAVLLEQDKVETLTQLSRLKAAEGRFDYVMDQKRQVTAIVDYAHTPDALEKVL 362

Query: 374 KNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           + I+ +     +++ V GCGGDRD+ KRP M K+A   +D  I+T DNPRSE+PE I  E
Sbjct: 363 ETIQALRKADAKVLTVVGCGGDRDRTKRPTMAKVACQYSDQVILTSDNPRSEEPEAIIRE 422

Query: 432 IIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           +  G+P       +   +R EAIRTA  +    DV++VAGKGHE    +  G K    D 
Sbjct: 423 MEAGVPAGSRRQVLSITDRKEAIRTACRLAQSGDVVLVAGKGHEKYQEI-KGVKHPFDDK 481

Query: 487 DIIRE 491
           +I++E
Sbjct: 482 EILKE 486


>gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
 gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
          Length = 491

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH L+  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALNLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  ++ L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466


>gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
          Length = 491

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|15829343|ref|NP_308116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751405|ref|ZP_02776427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755693|ref|ZP_02780700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764036|ref|ZP_02789043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771309|ref|ZP_02796316.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776929|ref|ZP_02801936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781970|ref|ZP_02806977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789612|ref|ZP_02814619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801512|ref|ZP_02826519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939301|ref|ZP_03084683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208809395|ref|ZP_03251732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814085|ref|ZP_03255414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821065|ref|ZP_03261385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398185|ref|YP_002268693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217326553|ref|ZP_03442637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791222|ref|YP_003076059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226842|ref|ZP_05941123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255246|ref|ZP_05947779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK966]
 gi|21362683|sp|Q8X9Z2|MURE_ECO57 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13359545|dbj|BAB33512.1| meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767763|gb|EDU31607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014523|gb|EDU52645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000402|gb|EDU69388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357056|gb|EDU75475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359898|gb|EDU78317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365881|gb|EDU84297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370798|gb|EDU89214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376347|gb|EDU94763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208729196|gb|EDZ78797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208735362|gb|EDZ84049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741188|gb|EDZ88870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209159585|gb|ACI37018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746594|gb|ACI71604.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746596|gb|ACI71605.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746598|gb|ACI71606.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746602|gb|ACI71608.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|217322774|gb|EEC31198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590622|gb|ACT69983.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. TW14359]
 gi|320190392|gb|EFW65042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC1212]
 gi|320642124|gb|EFX11475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647487|gb|EFX16282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652821|gb|EFX21059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320668831|gb|EFX35626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345195|gb|EGD68938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1125]
 gi|326346951|gb|EGD70685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1044]
          Length = 495

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  Q  T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G      +R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
 gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
          Length = 491

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 493

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 241/469 (51%), Gaps = 37/469 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I  V  DSR I+ G++FV I G K DGH ++  A+  GA A++V    +       +
Sbjct: 21  DKEIKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGAGAIALLVEKPVAGTQGVTVV 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           R       V +TRK L + AS  YG  P   L + G +G +   +    I      + +Q
Sbjct: 81  R-------VKDTRKALPIVASNFYGA-PSRQLRLIGVTGTNGKTTTTHLITSVLEEAGYQ 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   T+ +  +  +     TTP  + L + +  +  +G  +  +E SSH LD  R+D +
Sbjct: 133 VGILGTLYARWRGKQESMAHTTPESVDLERFIRRVVDEGGDYTVMEVSSHALDLGRVDCL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  FTNL +DH+DYH+T   Y  AK++LF  L  K+    +   D  S  V + A  
Sbjct: 193 DFDAAVFTNLTQDHLDYHRTMDDYREAKLKLFRRLKNKDGHFAVINRDDPSWTVFRDATP 252

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVY 313
           +  RV++ G   +        A     +V +  EG  F   +P         L G F V 
Sbjct: 253 S--RVVTYGITDE--------AAVRATEVRVEPEGSCFTLKWPEGDLRLSLNLSGWFNVS 302

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA   +  GI   ++   LEK+  +PGRFE V    +   + VDYAHT + LE IL
Sbjct: 303 NALAAAAFALKEGISPEVIKRGLEKVSGIPGRFETVKCG-QDFTVIVDYAHTPDGLENIL 361

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K  R I   RII VFGCGGDRD+GKRP+MGKIA + +D +I+T DNPRSEDP  I  +I+
Sbjct: 362 KTARAIAKKRIITVFGCGGDRDRGKRPLMGKIAAECSDFSIITSDNPRSEDPLAIIEDIV 421

Query: 434 HGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G+       +    +R  AI  AI M   +D++++AGKGHET  ++ +
Sbjct: 422 TGVKKVPNSRYTVIADRRVAIGQAINMAQAEDMVIIAGKGHETYQLLKD 470


>gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum WCFS1]
 gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus plantarum WCFS1]
          Length = 550

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%)

Query: 13  ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA+
Sbjct: 62  QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAK 121

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK+
Sbjct: 122 IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 172

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           +V   ++QI +    ++  IG   T+    +D +L    TTP  I   + L+ +   GV 
Sbjct: 173 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 229

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K S 
Sbjct: 230 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 289

Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++  DD   +E  +        VL+ G         K  A+ N Q V I   G
Sbjct: 290 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 338

Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +FD             L G+F VYN L A     A GI    +++ LEK+  V GRF+ 
Sbjct: 339 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 398

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +++ G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++
Sbjct: 399 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 457

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AG
Sbjct: 458 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 517

Query: 467 KGHETVHIV 475
           KGHE   I+
Sbjct: 518 KGHEDYQII 526


>gi|291280910|ref|YP_003497728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|209746600|gb|ACI71607.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|290760783|gb|ADD54744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|320658210|gb|EFX25939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663519|gb|EFX30803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 495

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  Q  T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|331671604|ref|ZP_08372402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
 gi|331071449|gb|EGI42806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
          Length = 495

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 249/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIVNADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 491

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVSKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 487

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 238/467 (50%), Gaps = 23/467 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASI 412

Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I  G        FIE   R +AI   I   +  DV+V+AGKGHE
Sbjct: 413 FDDIRPGFTAVDKVRFIE--GRGQAIAELIASASADDVVVLAGKGHE 457


>gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
 gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
          Length = 487

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 154/480 (32%), Positives = 253/480 (52%), Gaps = 37/480 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N +  DSR +    +FVA+ G   DGH +I  A+  GA AI+  +          + + 
Sbjct: 24  VNAICFDSRKVGLDDVFVAVKGTLVDGHSYIDTALNAGANAIICET------MPVNLVNG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V N    L++ AS  YG   +N+  + VTGT+GK++++S + Q+ +++G   +++
Sbjct: 78  ITYVQVKNGNAALAIMASNFYGTPSKNLKLVGVTGTNGKTTISSLLYQLFKKAG---YKV 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  STI     D  +    TTP  I + K+L+ +++ GV    +E SSHG+ Q R++G+ 
Sbjct: 135 GLLSTIKIMIDDKEIKATHTTPDAITINKSLAEMNNAGVEFCFMEVSSHGIHQKRIEGLV 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL  DH+DYH+T   Y + K  LF+  LPK + A+   DD  +  VM +   A
Sbjct: 195 FEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDG-LPKTAWALTNIDDK-NGAVMLQNTKA 252

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +  ++     F    +   + N+   Q + I     D +    L G+F  YN L    
Sbjct: 253 KKQTYALKTYADF----RAQILENQFSGQLLKID----DNELWSKLIGDFNAYNMLAIYA 304

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +G++   +L  L +L  V GRF++  +      I VDYAHT ++L+ +L  I  + 
Sbjct: 305 TAQLLGLEKMEILRLLSELENVDGRFQYYISGKNITAI-VDYAHTPDALKNVLNTINALR 363

Query: 381 SGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +G   +I V GCGGDRD+ KRP+MG IA +++   + T DNPR+E P +I  E+  G+  
Sbjct: 364 TGNEDVITVVGCGGDRDKSKRPVMGHIASEMSTKVVFTSDNPRTESPSEILKEVEAGVEA 423

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 +   NR +AI+TA ++   +D++++AGKGHET    TNG +    D  I++++L
Sbjct: 424 QNTRKVLTIENREQAIKTACQLAQPKDIILIAGKGHETYQ-ETNGVRIDFDDYKIVKQLL 482


>gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 491

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|331661459|ref|ZP_08362383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
 gi|331061374|gb|EGI33337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
          Length = 495

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 249/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIVNADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|51246753|ref|YP_066637.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Desulfotalea psychrophila LSv54]
 gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein
           [Desulfotalea psychrophila LSv54]
          Length = 1014

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 254/497 (51%), Gaps = 55/497 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +V++DSR + +G +F+A  G  +DGH ++  A+ +G   ++V +    Q+  A    +
Sbjct: 40  VADVTADSRQVASGSLFIARRGGIQDGHAYVEDALLRGCPVVIVEAGSVSQNAYA----H 95

Query: 90  TPILVV---DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143
            P LV+   D+   +  + A+  Y  +P    +++ +TGT+GK++++  ++ +  R G  
Sbjct: 96  CPALVIEVADSQAAYGKILAN--YFANPAEKLSLVGITGTNGKTTISYLLEDMLTRLG-- 151

Query: 144 SFQIGPTSTISS--FAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             Q+G   T+++  +  D         LTTP    + + L  ++  GV  V +E SSH +
Sbjct: 152 -HQVGVIGTVNNRFYRADGSQEIIATSLTTPDAKIVQQLLRRMADAGVDTVIMEVSSHAI 210

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYS 253
            Q R+  ++     FTNL RDH+DYH   + YF+AK+ LF   L ++  A+I +D     
Sbjct: 211 SQARIGALRFDLAIFTNLSRDHLDYHLQMEDYFSAKLGLFSRYLKEDGIAVIPSDSRQLQ 270

Query: 254 KEVMKRAHN--AG-CRVLSVGYQ-GKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLP 307
            E ++R H   AG  R LS G + G  + L   +V        V ++   +  +F   L 
Sbjct: 271 TEFLQRLHRQLAGRNRFLSWGEEVGSDVQLHHYRVGLTETDCAVRLADCQQMLEFQSGLV 330

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYA 363
           G F + N L     C A+ I    + E++ +L   PGR E V            ++VDYA
Sbjct: 331 GRFNIDNLLAVIAACRALAISGQDIAENIGRLQGAPGRVERVFATETPANAQPVVFVDYA 390

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L+ +L  +  +  G +I VFGCGGDRD+GKRP+MG +A  LAD+ IV DDNPR+E
Sbjct: 391 HTPDALDKLLSTLGDVPHGDLIAVFGCGGDRDKGKRPLMGAVAARLADVVIVADDNPRTE 450

Query: 424 DPEKIRAEIIHGIP--------------------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
             E I AEI+ G+                     G +  G+R  AI  A+ M   +D++ 
Sbjct: 451 ASEPILAEIVVGVAEQAMPLRNPDWLFERKANERGCVVVGDRRRAIDLAVHMACSKDIIA 510

Query: 464 VAGKGHETVHIVTNGEK 480
           +AGKGHE   +   G+K
Sbjct: 511 IAGKGHEPYQLGATGKK 527



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + EV++DSR +  G IFVA+ G   DGH ++ Q +A GA  +VV  A    D +      
Sbjct: 565 LGEVTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAAGAACLVVEKARP--DLTC----- 617

Query: 90  TPILVVDNTRKFLSLFASR---LYGKHPENILAVTGTSGKSSVASFVQQI 136
             +LV D  R    + A+R     G     ++ +TG+SGK+++      I
Sbjct: 618 PQVLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGKTTIKEMTASI 667


>gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
 gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|46576983|sp|Q81WC7|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
          Length = 491

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
 gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
          Length = 491

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++ G  G  +    +R EAI  AI  +   D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 466


>gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
 gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 491

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
 gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
          Length = 491

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 247/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+     ++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETTIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. NATL1A]
          Length = 509

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 243/468 (51%), Gaps = 23/468 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S+DSR I+ G +F+ + G K DG  F  +AI +GA A ++S   SL   +     
Sbjct: 24  EIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIERGACAAIISKKASL--LNPPTNE 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +  +++ +    F+   A+  +GK    I  + +TGT+GK++ +  ++ +    G  S  
Sbjct: 82  DPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTTSFLIEFLTTSLGHPSAL 141

Query: 147 IGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            G   +   ++ + ++ TT   + L   L      GV + ++E SSH L Q+R+ G    
Sbjct: 142 FGTLINRWPNYEETSKYTTTFAVPLQAKLRKAVQAGVEYGAMEVSSHALSQNRVAGCDFN 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESP-AIIYADDAYSKEVMKRAHNA 263
              FTNL RDH+DYH + ++YF AK  LF   L+  + P ++I  DD +   ++ +  N 
Sbjct: 202 GAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDDDGPRSVINIDDKWG-SILAKELNK 260

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQVYNALV 317
            C   S+    + I  K    I N Q +     GK        +F+ PL GEF + N L 
Sbjct: 261 KCWTCSLKENSQ-IREKPDLYISNLQIMQDGYMGKLHTPFGVGNFISPLIGEFNLMNMLQ 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---GTNSRGGR--IYVDYAHTSNSLEMI 372
           A G+ +  G+    +LE L K   VPGR + +   G   + G   + VDYAHT + L+  
Sbjct: 320 AIGILVQRGLPLNDLLEALNKFPGVPGRMQLINMDGFKVKDGYPLVIVDYAHTPDGLQNA 379

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L   R++T  R+I VFGCGGDRD+GKR  MG++A   AD  +VT DNPR EDP +I  +I
Sbjct: 380 LIASRSLTKKRLICVFGCGGDRDKGKRSKMGEVAAKFADYIVVTSDNPRQEDPIEIIKDI 439

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             GI    E   +  R  AI+ AI    K DV+++AGKGHE   I+ +
Sbjct: 440 QKGITIDSEISVEPERSIAIQFAIAKAKKNDVVLIAGKGHEDYQILKD 487


>gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
 gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
          Length = 485

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 164/483 (33%), Positives = 255/483 (52%), Gaps = 35/483 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I  ++ DSR +Q G +FVA+ G + DGH +I +AI +GA A+V  +   +Q    T  
Sbjct: 23  RNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAIEKGAVAVVCEAWPEVQAEGVTY- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
                + V ++   +   ++  YG     +  + VTGT+GK+++A+ +  + +  G   +
Sbjct: 82  -----VQVKDSESAVGRLSTVFYGDPTSKLQLVGVTGTNGKTTIATLLYNMFRVFG---Y 133

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G  ST+ ++  D  +    TTP PI L + L  ++ +G  +  +E SSH + QHR+ G
Sbjct: 134 KCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHAVAQHRIAG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K   G FTNL RDH+DYH+T + Y +AK   F+  LPK + A+   DD  +  +M +  
Sbjct: 194 LKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDG-LPKGAFAVTNVDD-RNGMIMVQNT 251

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN--ALVAA 319
            A     S+     F   K      + + + + V GK+     P  G F V N  A+ AA
Sbjct: 252 KAVVNTYSLRAVADF---KAKVLEESFEGMCLDVNGKEVS--VPFIGRFNVSNLLAVYAA 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +C+  G +  LV   L  L  V GRFE +  +  G    VDYAHT ++L  +L  +  I
Sbjct: 307 AVCMGRGAEDVLVA--LSTLRPVNGRFETI-RSREGVTAIVDYAHTPDALVNVLSTVNEI 363

Query: 380 TS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               G +I V G GG+RD+GKRPIM + A+  +D  I+T DNPR E+P++I  +++ G+ 
Sbjct: 364 LKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVIITSDNPRFEEPQEIINDMLAGLD 423

Query: 438 -----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                  I   +R EAIRTA  M    DV++VAGKGHE    V  G K    D ++I+ +
Sbjct: 424 KEQMRKVISIVDRKEAIRTACMMARPGDVVLVAGKGHEDYQEV-KGVKHHFDDHEVIKGV 482

Query: 493 LGL 495
            G+
Sbjct: 483 FGI 485


>gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
 gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
          Length = 471

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 238/479 (49%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  A+V  +     D S       P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMAEMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            N  + LS  A + Y   P   L + G +G +   +  Q + Q        +G TS +  
Sbjct: 64  RNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWGQ----ALGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A 
Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    
Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLSQLPQAVAVS 236

Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +      G++G ++   +V    N   ++         F   L G F V N LVA    +
Sbjct: 237 MENNVPAGWKGPWLSATQVDYHDNGASISFDSSWGQGQFESRLMGAFNVSNLLVALSTLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G   A +L    +L  V GR E      +   + VDYAHT ++LE  L   R    G+
Sbjct: 297 SLGYPLAQLLAAAPQLLPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+   ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+ +AI    + DV+V+AGKGHE   +V N     S    + R +LG++
Sbjct: 413 HAQAIHGRAEAVTSAIMQAKEDDVVVIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVM 470


>gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 491

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGHET  I+
Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466


>gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 483

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 165/487 (33%), Positives = 243/487 (49%), Gaps = 44/487 (9%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +L+  L+   ++  E ++++ +  DSR      +F+AI G K DGH FI  AIA GA
Sbjct: 2   ELSKLLTGLNYVCVKGNEHQEVDHMIYDSRIKTNAGLFIAIEGFKTDGHQFIEAAIANGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125
           +AI+V            I+ +  I+ V++TR  ++L A+  YG HP     ++ VTGT+G
Sbjct: 62  KAILVQK-------DVEIKEDVTIIKVEDTRLAMALVANNAYG-HPSKQFELVGVTGTNG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL---------TTPSPIYLAKALSY 176
           K+S+   + QI +       +IG   TI     +NR+         TTP  + L      
Sbjct: 114 KTSITFLLGQILEAY---HKKIGIIGTI-----ENRIGSQILKAERTTPESLDLQALFKK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +    V    +E SSH L   R+ G     G FTNL +DH+D+HQT + Y  AK +LF  
Sbjct: 166 MVESQVDTTLMEVSSHALALSRVAGSDFKVGIFTNLTQDHLDFHQTMENYAAAKAKLFTM 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TIS 294
                   I+  D  Y  E++K    A C +++     K    K    I     V  T+ 
Sbjct: 226 C----ETGIVNKDSDYINEIIK---GATCNLVTYAID-KDADYKATNVIITAAGVEYTLV 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +   F    P+PG+F VYN L       A+ I    +L  L+    VPGR +   +  +
Sbjct: 278 CDQGTFKVDVPIPGKFTVYNTLAVIAAARALEIPMTHILATLKIAKGVPGRVQAFKS-IK 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  + VDYAHT + LE +L  I+    G II VFGCGGDRD+ KRPIMGKIA   +D   
Sbjct: 337 GYSVLVDYAHTPDGLENVLSTIKEFAQGHIITVFGCGGDRDKTKRPIMGKIAATYSDHVF 396

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGKGHE 470
           +T DNPR+EDP  I  E+  G+    +   ++E  + AIEM       +DV+++AGKGHE
Sbjct: 397 ITSDNPRTEDPLLILDEVEVGVKAITDNYVKVEDRKAAIEMALSEAKAEDVVLIAGKGHE 456

Query: 471 TVHIVTN 477
              I+ +
Sbjct: 457 NYQILKD 463


>gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
 gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
          Length = 505

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 167/463 (36%), Positives = 243/463 (52%), Gaps = 19/463 (4%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P +   +++ +++ DSR +  G +FVA+ G +  G      A  QGA AI+   A +  
Sbjct: 24  LPSEVAGQRVTDLAQDSRRVTPGAVFVALRGTQGHGLAHARAAAEQGAVAILWDEAEAAP 83

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
             S       P+L +   R  L      L+G  P +  ++AVTGT GK+SV+       +
Sbjct: 84  ALS------IPVLHLPGLRVALPAICDALWGAWPADYPVVAVTGTDGKTSVSQLFAGALE 137

Query: 139 RSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + G+ +  +G   T    A +D   TTP  I L + L++L++ G   +S+EASSHGL+Q 
Sbjct: 138 QLGVPTGVVGTLGTGRFGALEDCGHTTPGVIDLHRHLAHLTADGCRALSIEASSHGLEQG 197

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ G+ +     T LG DH+D+H +QQAY +AK RLF    P    A++ ADDA  + ++
Sbjct: 198 RMAGLPVRVAVLTRLGSDHLDFHGSQQAYADAKARLFA--WPGLETAVLNADDALGQRLI 255

Query: 258 KRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +        +L+    G    L  ++V A  +  + T+ V G+ +     L G FQV N 
Sbjct: 256 R--ETTAEHILTYSAVGASADLVAREVEAGSDGIRFTLEVAGEAWPVQAALFGLFQVGNL 313

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L       A+G      ++ + +L  VPGR E     S G  + VDYAHT  +L   L  
Sbjct: 314 LATLAALRALGHSWPAAVDAVSRLRGVPGRMERFELPS-GALLVVDYAHTEQALAAALDA 372

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R  T+GR+I VFGCGGDRD  KRP MG+ A   AD  IVTDDNPRSEDP  IRA ++ G
Sbjct: 373 LRPHTAGRLIAVFGCGGDRDVTKRPAMGRAASARADQVIVTDDNPRSEDPAAIRAAVLAG 432

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                   E G+R  A+R A+      DV+++AGKGHET   V
Sbjct: 433 CDRPEACRELGDREAAVRAAVAEAGPGDVILLAGKGHETTQQV 475


>gi|331645195|ref|ZP_08346306.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
 gi|281177305|dbj|BAI53635.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE15]
 gi|330909932|gb|EGH38442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli AA86]
 gi|331045952|gb|EGI18071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
          Length = 495

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 248/484 (51%), Gaps = 24/484 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATICFSSSWGDGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+ +VTDDNPR+E+P  I  +I+ G
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVVVTDDNPRTEEPRAIINDILAG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N     S    + R +
Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490

Query: 493 LGLI 496
           LG+I
Sbjct: 491 LGVI 494


>gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
 gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
          Length = 471

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 236/479 (49%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVAIVG++ DG  +IPQAIAQG  A++  +     D S       P++ +
Sbjct: 4   DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIAEADGVAPDASVVEMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            N  + LS  A + Y   P   L + G +G +   +  Q + Q S      +G TS +  
Sbjct: 64  RNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----ALGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A 
Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    
Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLGQLPQAVAVS 236

Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +      G+ G ++    V    N   +       +      L G F V N LVA    +
Sbjct: 237 MEGQVPTGWNGPWLSANNVHYHDNGASIAFDSSWGEGKLESRLMGAFNVSNLLVALSTLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G+
Sbjct: 297 SLGYPLAQLLATAPNLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+   ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+ +AI    ++DV++VAGKGHE   +V N     S    + R +LG++
Sbjct: 413 HALAIHGRAEAVTSAIMQAKEEDVVLVAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVM 470


>gi|150260415|ref|ZP_01917143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
 gi|218927746|ref|YP_002345621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis CO92]
 gi|21362700|sp|Q8ZIF4|MURE_YERPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115346357|emb|CAL19229.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diam i nopimelate
           ligase [Yersinia pestis CO92]
 gi|149289823|gb|EDM39900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
          Length = 490

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S   
Sbjct: 14  ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q S      
Sbjct: 74  IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 128

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q R
Sbjct: 129 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + 
Sbjct: 189 VAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 246

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   A    ++     G+ G ++   KV    N   +       + +    L G F V N
Sbjct: 247 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 306

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +  G   A +L     L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 307 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 365

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ 
Sbjct: 366 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 425

Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+   G ++    R EA+ +AI    + DV+++AGKGHE   +V N
Sbjct: 426 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 471


>gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
 gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
          Length = 487

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 167/510 (32%), Positives = 262/510 (51%), Gaps = 41/510 (8%)

Query: 1   MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKLQ+L+    P ++I    +        ++  V+ DSR I+ G +FVA+ G + DGH F
Sbjct: 1   MKLQELLKNIEPVQIIGDADV--------EVTGVNIDSRKIKEGHLFVAMKGTQVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           IP+A+  GA++++       +D           + V +T   +   A+  YG     +  
Sbjct: 53  IPKALELGAKSVLC------EDMPEEKVEGVTYIQVASTEDAVGKVATLFYGDPSRKLKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK+++A+ +  + ++ G    + G  ST+ ++ +D  +    TTP PI L   
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFG---HKCGLLSTVCNYIEDEAIPADHTTPDPIELNML 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  +   G  +  +E SSH + Q R+ G++   G FTNL RDH+DYH+T + Y NAK   
Sbjct: 164 LGKMVEAGCEYAFMECSSHAIAQKRIGGLQFAGGLFTNLTRDHLDYHKTFENYRNAKKAF 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+  L K + AI  ADD  +  +M +   A  +  S      F      C       + +
Sbjct: 224 FDG-LSKTAFAITNADDK-NGMIMVQNTKATVKTYSTRSMADFRARILECHFGG---MYL 278

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++G++    F   G+F V N L   G  I +G     VL  +  LH V GR E +  + 
Sbjct: 279 EIDGREVGVQF--IGKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLHSVSGRLEPI-QSP 335

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLA 410
            G    VDYAHT ++LE +L  I  +  G+   +I V G GG+RD+GKRP+M + A+  +
Sbjct: 336 EGYTAIVDYAHTPDALENVLNAIHEVLEGKGGEVITVCGAGGNRDKGKRPLMAQEAVKQS 395

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T DNPR E+P+ I  +++ G+        I   +R EAIRTA  +  K DV++VA
Sbjct: 396 DKVIITSDNPRFEEPQDIINDMLAGLNAQQMKKVISIVDRKEAIRTACMLAKKGDVILVA 455

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           GKGHE    +  G K    D ++IR+I G+
Sbjct: 456 GKGHEDYQEI-KGVKHHFDDKEVIRDIFGI 484


>gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
          Length = 488

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 229/450 (50%), Gaps = 14/450 (3%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++AG +FVAI G++ DG+ FI  AI  GA A+V  +  S +  +     N P++  
Sbjct: 25  DSRKVKAGDLFVAIKGHQVDGNQFIDSAIHSGASAVVSETELSSEHLTVAFIGNVPVVKY 84

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               + LS  A   Y    +N+  + VTGT+GK++++  + Q  +  G  S  +G     
Sbjct: 85  HQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRSAVMGTIGN- 143

Query: 154 SSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
               Q  + + TT S + +  +LS     G    S+E SSHGL QHR++ +   A  FTN
Sbjct: 144 GLLGQIIEAKNTTGSAVEIQSSLSNFKQAGADFASIEVSSHGLAQHRVEALHFKAAIFTN 203

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYHQ+ + Y  AK RLF EL       +I ADD    + +    +A    ++  
Sbjct: 204 LTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDEIGHQWLTELPDAIAVSMNAD 261

Query: 272 YQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           ++       K   IH       +T      +     PL G F V N L+     ++ G  
Sbjct: 262 FKVGLHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYP 321

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +L   + L  V GR E +   ++   + VDYAHT ++LE  L   R    G +  +F
Sbjct: 322 LENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDALEKALIAAREHCQGELWCIF 380

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NR 445
           GCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I A+I+ G     + G   +R
Sbjct: 381 GCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDR 440

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +AI+ AIE   + DV+++AGKGHE   I+
Sbjct: 441 AQAIQFAIESAVENDVILIAGKGHEHYQII 470


>gi|22127505|ref|NP_670928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis KIM 10]
 gi|45443366|ref|NP_994905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809542|ref|YP_653458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|108810581|ref|YP_646348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|145600347|ref|YP_001164423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162419817|ref|YP_001607300.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165928210|ref|ZP_02224042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937753|ref|ZP_02226314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008992|ref|ZP_02229890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212163|ref|ZP_02238198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401238|ref|ZP_02306738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421898|ref|ZP_02313651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426477|ref|ZP_02318230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229837059|ref|ZP_04457224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|229840438|ref|ZP_04460597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843020|ref|ZP_04463170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229900773|ref|ZP_04515897.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|270487857|ref|ZP_06204931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294502638|ref|YP_003566700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|21960603|gb|AAM87179.1|AE013965_6 meso-diaminopimelate-adding enzyme [Yersinia pestis KIM 10]
 gi|45438235|gb|AAS63782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108774229|gb|ABG16748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|108781455|gb|ABG15513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|145212043|gb|ABP41450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162352632|gb|ABX86580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165914165|gb|EDR32781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919821|gb|EDR37122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992331|gb|EDR44632.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206909|gb|EDR51389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960035|gb|EDR56056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049263|gb|EDR60671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054575|gb|EDR64383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682112|gb|EEO78204.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|229689896|gb|EEO81955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696804|gb|EEO86851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706002|gb|EEO92011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|262360668|gb|ACY57389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D106004]
 gi|270336361|gb|EFA47138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294353097|gb|ADE63438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|320016916|gb|ADW00488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 495

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S   
Sbjct: 19  ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q S      
Sbjct: 79  IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q R
Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + 
Sbjct: 194 VAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 251

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   A    ++     G+ G ++   KV    N   +       + +    L G F V N
Sbjct: 252 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +  G   A +L     L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ 
Sbjct: 371 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 430

Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+   G ++    R EA+ +AI    + DV+++AGKGHE   +V N
Sbjct: 431 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 476


>gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
 gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
          Length = 488

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 241/484 (49%), Gaps = 40/484 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  G  +  +G       F Q  + + TT S + +  +LS     G    
Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           I ADD    + +    +A    ++V     F    KV +    + + I    K  D  F 
Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287

Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F V N L+     ++ G     +L   + L  V GR E +   ++
Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  I
Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE 
Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466

Query: 472 VHIV 475
             I+
Sbjct: 467 YQII 470


>gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 492

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 39/492 (7%)

Query: 13  ELINQLSI--FPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           ELI  L    F   + E  +I +V+ D+R ++ G +FV I+G+ +DGH    +A+ +GA 
Sbjct: 5   ELIKPLKTTNFSKDFSENLEITKVTQDTREVEPGSLFVCIIGSVQDGHELAKEAVQKGAT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126
            +V S           I    P++ V++T K +++ A+  Y  HP     ++ VTGT+GK
Sbjct: 65  LVVASEP---------IEVAVPVIYVNDTMKAMAILAATFY-HHPSQDLRVIGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++V   +  I       +  IG     I S   + + TTP  I L K L  +   GV   
Sbjct: 115 TTVTHLLDYIFHDHKEKTGVIGTMYRRIGSKVYETKNTTPDSITLQKTLREMQDSGVATC 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPK 240
           S+E SSH L Q R+ G       FTNL +DH++YH T + Y  AK  LF +L       K
Sbjct: 175 SMEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQGK 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKD 299
              AI+  DD   +   ++      RV S G            +I N+  +  ++ E + 
Sbjct: 235 PKFAILNFDDPVGRSFEEKT---AARVFSYGIDQPADFKATDLSITNRGTRFNLNFENRV 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++    L G+F V NAL A     A G+D   V++ +EK+  V GRFE V  +     I 
Sbjct: 292 YEVQLQLVGKFNVSNALAAIAGAYAAGLDLTSVIQSIEKISGVRGRFEIVKGDHDFAVI- 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L  +L  +  I +G +  V GCGGDRD+ KRPIM +IA   +D  I T DN
Sbjct: 351 VDYAHTPDGLLNVLNAVNEIKTGTVFCVVGCGGDRDRTKRPIMAEIAQQNSDTVIFTSDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PR+EDP  I  E++ G    +E+G      +R EAI+ AIE  N  D++++AGKGHE   
Sbjct: 411 PRTEDPIAILHEVVDG----LEEGTYQLIPDRREAIQAAIEQANTNDIVLIAGKGHEDYQ 466

Query: 474 IVTNGEKKMSVD 485
           I+  G +K+  D
Sbjct: 467 II--GTEKIHFD 476


>gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 488

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 161/484 (33%), Positives = 241/484 (49%), Gaps = 40/484 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  G  +  +G       F Q  + + TT S + +  +LS     G    
Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFRQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           I ADD    + +    +A    ++V     F    KV +    + + I    K  D  F 
Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287

Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F V N L+     ++ G     +L   + L  V GR E +   ++
Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M +IA   A+  I
Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQIAEQFAEKII 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE 
Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466

Query: 472 VHIV 475
             I+
Sbjct: 467 YQII 470


>gi|170025738|ref|YP_001722243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|169752272|gb|ACA69790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis YPIII]
          Length = 495

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S   
Sbjct: 19  ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q S      
Sbjct: 79  IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q R
Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFTAMEVSSHGLIQDR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + 
Sbjct: 194 VAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 251

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   A    ++     G+ G ++   KV    N   +       + +    L G F V N
Sbjct: 252 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +  G   A +L     L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ 
Sbjct: 371 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 430

Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+   G ++    R EA+ +AI    + DV+++AGKGHE   +V N
Sbjct: 431 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 476


>gi|325067117|ref|ZP_08125790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces oris K20]
          Length = 528

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 162/463 (34%), Positives = 237/463 (51%), Gaps = 38/463 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DS    AG +FV + G    G  F  QA+A GA A V++ A   Q    T    TP+
Sbjct: 50  VSVDSGDTAAGELFVGLPGFTVHGARFAAQAVASGAVA-VLTDADGAQIVHETA-PGTPV 107

Query: 93  LVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQI-------CQRSGL 142
           LV D+ R  +   ++ +Y  HP   L   AVTGT+GK++ A F+  I       C  +G 
Sbjct: 108 LVHDDPRAVVGPLSAEVY-HHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGT 166

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              ++G  S  S      R T  +P+ L + ++      V   S+EASSH +  HRLDG+
Sbjct: 167 VELRVGERSVESP-----RTTVEAPV-LQRMMALAVEDKVGAASLEASSHAIVLHRLDGL 220

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +    FTNL RDH+D+H+T + Y  AK +LF     +    ++  DD +   +   A  
Sbjct: 221 VVDVAGFTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARRG--VVCVDDQWGAALAAEAPI 278

Query: 263 AGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNAL 316
              RV +  Y G      ++    V    +    T+   +G+  +   PLPG   V NA 
Sbjct: 279 EIDRVRA--YPGDTPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAA 336

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKN 375
           +A  + I  G+ +A     L   H +PGR + +   + R G   VD+AHT  ++E+ LK 
Sbjct: 337 LALVMAIRAGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELALKA 396

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R IT GR+IVVFG  GDRDQGKRP++G++   LAD+ +VTD+NPRSEDP+ IR  I+ G
Sbjct: 397 VRPITPGRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEG 456

Query: 436 IPGFIEKGNRIE--------AIRTAIEMLNKQDVLVVAGKGHE 470
           + G       +E        A+R  +E+    D ++V GKGHE
Sbjct: 457 VRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHE 499


>gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 486

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 243/477 (50%), Gaps = 32/477 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V  DSR +    +FVA  G   DGH +I  A+ QGA AIV       ++      + 
Sbjct: 24  ITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKNAVNQGAIAIVC------EELPKDTVNG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V N ++ L+  AS  Y    EN+  + VTGT+GK+++AS + Q+  ++G   F++
Sbjct: 78  VTYVKVQNAQQALAFMASNFYENPSENLQLVGVTGTNGKTTIASLLYQLYTKAG---FKV 134

Query: 148 GPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  ST+     +       TTP  + + K LS ++  G  +  +E SSHG+ QHR  G+K
Sbjct: 135 GLLSTVKIMVGNIEHKATHTTPDSLTINKYLSKMTDIGCEYCFMEVSSHGIAQHRTTGLK 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL  DH+DYH T   Y + K + F+E LP  + A+  ADD   K  M    N 
Sbjct: 195 FTGGIFTNLSHDHLDYHSTFAEYRDVKKKFFDE-LPSSAFALTNADD---KNGMVMLQNT 250

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +  +  Y  K I   K   + N Q   + ++  + +    L G F  YN L       
Sbjct: 251 KAKKQT--YALKSIADYKAQILEN-QFSGLLLKLNNNELWSKLIGNFNAYNLLAIFATTE 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382
            +G+ +   L  + +L  V GRF+++  N       VDYAHT ++L+ +L+ I  I +  
Sbjct: 308 LLGMQTMESLRLISELESVNGRFQYLIKNKITA--IVDYAHTPDALKNVLETINAIRTKN 365

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440
             +I V GCGGDRD  KRP MG IA  L+   I T DNPR+EDP KI   I  G+ P   
Sbjct: 366 EELITVVGCGGDRDATKRPKMGHIASVLSTKVIFTSDNPRTEDPNKIIEAIESGVEPQHF 425

Query: 441 EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +K     +R +AI+TA     + D++++AGKGHET   + NGE+    D  I++ +L
Sbjct: 426 KKTLSIADRKQAIKTACSFAKENDIILIAGKGHETYQEI-NGERTDFDDFKIVKTLL 481


>gi|153949506|ref|YP_001402349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186894039|ref|YP_001871151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|152961001|gb|ABS48462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186697065|gb|ACC87694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 495

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S   
Sbjct: 19  ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q S      
Sbjct: 79  IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q R
Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + 
Sbjct: 194 VAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 251

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   A    ++     G+ G ++   KV    N   +       + +    L G F V N
Sbjct: 252 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +  G   A +L     L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ 
Sbjct: 371 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 430

Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+   G ++    R EA+ +AI    + DV+++AGKGHE   +V N
Sbjct: 431 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 476


>gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
 gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
          Length = 488

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 242/476 (50%), Gaps = 24/476 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y     N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSNNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  G  +  +G       F Q  + + TT S + +  +LS     G    
Sbjct: 119 TISQLLAQWVELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I ADD    + +    +A    ++  ++ G    +K +   ++ +   I+ E    + + 
Sbjct: 236 INADDEIGYQWLTELPDASAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVL 295

Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G F V N L+     ++ G     +L   + L  V GR E +   ++   + VDY
Sbjct: 296 HSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDY 354

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+
Sbjct: 355 AHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRT 414

Query: 423 EDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           E   +I  +I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE   I+
Sbjct: 415 ESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQII 470


>gi|167469519|ref|ZP_02334223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis FV-1]
          Length = 478

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S   
Sbjct: 2   ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 61

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q S      
Sbjct: 62  IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 116

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q R
Sbjct: 117 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + 
Sbjct: 177 VAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 234

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   A    ++     G+ G ++   KV    N   +       + +    L G F V N
Sbjct: 235 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +  G   A +L     L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 295 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 353

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ 
Sbjct: 354 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 413

Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+   G ++    R EA+ +AI    + DV+++AGKGHE   +V N
Sbjct: 414 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 459


>gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 489

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 170/514 (33%), Positives = 265/514 (51%), Gaps = 48/514 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ LI KD P    + S      +E +I  + + S+ +  G +F+A  G   DG  +I
Sbjct: 1   MKLKRLI-KDLPNAEIKGS------KEIEITGICAHSKQVAPGNLFIAKKGRTFDGSQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            +A+  GA A++          S  I  N  + VV+   K +S F    Y +  E +L  
Sbjct: 54  AEAVETGAAAVLNDIFDPSLKVSQIIHPN--VAVVEG--KLVSAF----YHRPGEELLMV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V+  ++ +     +    IG     I   A     TTP      K L  +
Sbjct: 106 GVTGTNGKTTVSYLIKHLFDSLEMRPGLIGTIEYLIGDHAAPATHTTPDVATNHKLLREM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +Q      +E +SH L Q R+  I    G FTNL +DH+DYH+T  AY   K +LF  L
Sbjct: 166 VNQRSQAAVMEVTSHALHQGRVSEISFDVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSL 225

Query: 238 LP-----KESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGY--------QGKFIHLKKV 282
            P     K  P  A++  DD + ++++      GCRV  + Y        + + I L   
Sbjct: 226 DPEAKKRKNYPKAAVVNIDDPWFEKIID-----GCRVPIITYGIANHADLRAEEIQLGAE 280

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++     T+  +GK +    PL G F V N+L   G  I++G+    VL+ ++    V
Sbjct: 281 GIVY-----TLVHQGKRYPVSLPLIGRFNVLNSLATIGCGISLGVPLNKVLDAVKSFPPV 335

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR E+V  N RG +++VD+AHT ++L+ +L  ++ +T G++IVVFGCGGDRD  KR  M
Sbjct: 336 PGRLEYV-PNKRGLKLFVDFAHTPDALKNVLNCLKELTQGKLIVVFGCGGDRDPYKRSQM 394

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G+IA + +D+AI+T DNPRSE+P  I  +I+ G      FI+  +R +AI  AI     +
Sbjct: 395 GRIAEEFSDLAIITSDNPRSENPANIMDQIVAGFNDPSCFIKIEDRRKAIEEAIHRATPE 454

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           DV+++AG+GHE   I  +   +   D +++ +IL
Sbjct: 455 DVVLIAGRGHEPYQIFAHQTIEFK-DREVVEDIL 487


>gi|2177098|gb|AAB60789.1| UDP-MurNAc-Dipeptide: meso-diaminopimelate ligase [Escherichia
           coli]
          Length = 495

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  S +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR + V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRMK-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 487

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 237/467 (50%), Gaps = 23/467 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA
Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++
Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R    GR++ +FGCGGDRD+GKR +M ++   LAD   VTDDNPRSE P  I
Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRSLMAEVVERLADGVWVTDDNPRSESPAII 412

Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +I  G        FIE   R +AI   I   N  DV+V+AGKGHE
Sbjct: 413 FDDIRPGFAAADKVRFIE--GRGQAIAELIASANADDVVVLAGKGHE 457


>gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. Y412MC61]
 gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
 gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC61]
 gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
          Length = 489

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 174/492 (35%), Positives = 255/492 (51%), Gaps = 50/492 (10%)

Query: 13  ELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +L+  LS  P  W     N     +  DSR +  G +F  + G   DGH F  +A+A+GA
Sbjct: 2   KLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126
            AIV     S+         + P+++V ++R+ +++ A   YG+  H  +++ VTGT+GK
Sbjct: 62  AAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           ++  S ++QI +++G  +  IG         S+   N  TTP  + L +    +  +GV 
Sbjct: 113 TTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAAN--TTPESLILQRTFKQMVDEGVE 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPK 240
            V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  LF +L     +
Sbjct: 171 FVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDE 230

Query: 241 ESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             P  A++  DD  S+      H     +++ G + K      V A    +Q+ I+  G 
Sbjct: 231 RRPKFAVLNHDDPVSQYY---KHMTAAPIVTYGMREK----SDVMA----EQIRITAGGM 279

Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            F    P         L G F VYN L AA  C+A G     +   L  +  VPGRFE V
Sbjct: 280 AFRLCTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV 339

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   I VDYAHT +SLE  LK +R +    + VV GCGGDRD+ KRP+M ++A+  
Sbjct: 340 -DEGQNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRY 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVA 465
           AD+AI T DNPRSEDP++I  ++  G+   I K     +R EAIR AI    + DV+++A
Sbjct: 399 ADVAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIA 458

Query: 466 GKGHETVHIVTN 477
           GKGHET  I+ N
Sbjct: 459 GKGHETYQIIGN 470


>gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus halodurans C-125]
 gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus halodurans C-125]
          Length = 486

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 240/459 (52%), Gaps = 39/459 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR +  G +F  I G   DGH +  QA++ GA A+V      L         +
Sbjct: 24  IHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPLEL---------S 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P++VV ++R+ ++  A++ YG+ P N   ++ VTGT+GK+++   +++I Q  G  +  
Sbjct: 75  VPVVVVRDSRRAMAQVATKFYGE-PTNDLQLIGVTGTNGKTTITHLIEKIMQDQGKMTGL 133

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T I    ++ + TTP  + L +  + +   GVT   +E SSH L   R+ G    
Sbjct: 134 IGTMYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGRVRGCDFD 193

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNA 263
              F+NL  DH+DYH T + Y  AK  LF +L    +   A++ ADD  S +    A   
Sbjct: 194 VAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDPASADF---AEMT 250

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVYN 314
             +V++ G + +        A    + V I+  G  F+             L G+F VYN
Sbjct: 251 IAQVVTYGIENE--------ADFQAENVRITSTGTTFELAAFEERMELSIHLIGKFSVYN 302

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L AA      G+    + + LE++  V GRFE V  + +   + VDYAHT +SLE +LK
Sbjct: 303 VLAAAAAAYVSGVPLQEIKKSLEEVKGVAGRFETV-KHDQPFTVIVDYAHTPDSLENVLK 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +  +  G + VV GCGGDRD+ KRP+M +IA   A+ AI T DNPRSE+P  I  ++  
Sbjct: 362 TVGELAKGDVRVVVGCGGDRDKTKRPVMAEIATTFANQAIFTSDNPRSEEPMDILRDMEQ 421

Query: 435 GIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G  G  ++   +R EAI  AIE+  + D++V+AGKGHET
Sbjct: 422 GAKGDSYLMIEDRKEAIFKAIELAKEDDIIVIAGKGHET 460


>gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
 gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
          Length = 486

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 240/459 (52%), Gaps = 32/459 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I ++  DSR ++   +F A+ G + DGH +I QAI QGA AI+       +D     
Sbjct: 20  QNDIIDIQIDSRGVKKQSLFAALRGTQVDGHQYINQAIKQGAVAILC------EDLPEQK 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
             +   + V ++   L + AS  Y  +P +   ++ VTGT+GK++VA+ + +  ++ G  
Sbjct: 74  NKDITYIQVPHSEAALGILASTFY-DNPSSKLKLVGVTGTNGKTTVATILYKTFKKLG-- 130

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            ++ G  ST+ ++  D  L    TTP  + + K L  +  +G  +  +E SSH +DQ R+
Sbjct: 131 -YKAGLLSTVCNYIDDEALETTHTTPDAVTINKLLHDMVLRGCDYAFMEVSSHAIDQKRI 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G+K   G FTNL RDH+DYH+T   Y  AK   F+  LPK + +++  DD   K  M  
Sbjct: 190 SGLKFAGGIFTNLTRDHLDYHKTIANYIKAKKEFFDN-LPKNAFSLVNLDD---KNGMVM 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             N    + +   +       +V   H    +   +E  + D +    G+F VYN L   
Sbjct: 246 VQNTKSAIHTYSLRSLCDFKARVIESHFNGMI---LEINNTDVVVQFTGKFNVYNLLAVY 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G    +G  +  VL  +  L  V GRFE +    +G  + VDYAHT ++L  +L  I  I
Sbjct: 303 GTACLLGQKADEVLIAISTLKSVSGRFETLQA-PKGYTVIVDYAHTPDALTNVLTTIHDI 361

Query: 380 TS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++I V G GG+RD+GKRP+M K ++  +D  I+T DNPR EDP++I  +++ G+ 
Sbjct: 362 LDGKGKVITVVGAGGNRDKGKRPLMAKESIKNSDTVIITSDNPRFEDPQEIIKDMLDGLN 421

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                  +   NR +AI+TA  +    DV+++AGKGHET
Sbjct: 422 TEEKQNVLTIENRRDAIKTACMLAKTNDVILIAGKGHET 460


>gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 516

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 246/464 (53%), Gaps = 41/464 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++DSR + +G +FVAI G + DG  F+P+A+  GA+ IV     S ++ +   + +
Sbjct: 43  VEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAGAKYIVGEHVLSQEEKALFEQVD 102

Query: 90  TPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + V +  + L+  A  L+    KH   ++ VTGT+GK+S A+ + ++ +R G  S  
Sbjct: 103 ASYIAVSSAHEALAALAQALWHYPSKH-LRLVGVTGTNGKTSTATMLHRLFERLGYKSGL 161

Query: 147 IGPTSTISSFAQDNRL---------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           IG          +NR+         TTP PI LA+ L  +   G +HV +E SSH   Q 
Sbjct: 162 IGTV--------ENRIGNEIIPATHTTPDPIALAQLLYRMQQAGCSHVFMEVSSHAAHQR 213

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+  ++ + G FTNL RDH+DYH T Q Y  AK   F++L P  + A++ ADD     ++
Sbjct: 214 RIGSLEFVGGLFTNLTRDHLDYHGTMQEYIRAKKMFFDQLSPN-AFALVNADDRNGSVML 272

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN--A 315
           +   N   +  + G +  F   K      + +   + +   D     PL G F  YN   
Sbjct: 273 Q---NTSAKKYTYGLK-SFADFKAKVVEGDFRGTELLL--NDRSVWIPLVGAFNAYNITL 326

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMILK 374
           + AA   +   ++  ++L+ L  +    GRFE +   S GGRI  VDYAHT ++L  +L+
Sbjct: 327 VYAAARLLLPDLEQDVLLQALSTIETAEGRFEVI---SEGGRIGIVDYAHTPDALIKVLE 383

Query: 375 NIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            IR +    GR+I V G GG+RD+GKRPIM + A   +D+ I+T DNPR EDP+ I  E+
Sbjct: 384 TIRPLVPQGGRVITVVGAGGNRDRGKRPIMAQEAFRRSDLLILTSDNPRDEDPQAIINEM 443

Query: 433 IHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G+        +   +R  AI TA  +   +DV++VAGKGHET
Sbjct: 444 MAGLTPEEQAQCLTNVDRRSAIATACRLATPRDVILVAGKGHET 487


>gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 491

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 237/454 (52%), Gaps = 17/454 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++DSR ++ G IF A+ G K+DG  +I  AI++GA A+ +    +       +R  
Sbjct: 26  ITGIATDSRKVRKGNIFFALPGTKDDGKNYISDAISKGASAVFLEGEVNNIYGVPLVRVR 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             + V+     +   F S+       NI+ VTGT+GK++  + +    +  G+ S  IG 
Sbjct: 86  EILDVLSKVSSYFYDFPSKYL-----NIIGVTGTNGKTTTTNLLYHYWKSKGIRSGLIGT 140

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               I   +  +  TTP P  L + L  +  + V  +++E SSH L   R+DGI L    
Sbjct: 141 IEYKIDDESYPSNFTTPQPQDLQEILRKMVDREVKFLAMEISSHALALKRVDGISLKGAV 200

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+D+H+T + YF AK+++F   L     A+I  D+ ++     R      RV 
Sbjct: 201 FTNLTQDHLDFHKTMEEYFQAKLKIFN-YLEDGGFAVINRDNEWTG----RISLPNRRVF 255

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            V  +   ++LKK    +N   + I     D      L G+F +YN L A G+ I +G  
Sbjct: 256 WVSLKNGDLYLKKHENTNNGMLLEIGTPLGDLIIDTKLKGKFNIYNILFAVGVLIGLGEP 315

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              + + L     V GR E +    +   + VDYAHT + L  +L+ ++  T GR+IVVF
Sbjct: 316 LEDISKFLSTFKGVKGRLELI-REGQNFDVIVDYAHTPDGLFNVLQTVKEFTKGRVIVVF 374

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKG 443
           GCGGDRD  KR  MG+I+  LADI IVT DNPR+EDP KI  +I  GI       +    
Sbjct: 375 GCGGDRDPTKRDKMGEISARLADIVIVTSDNPRTEDPLKIIRQIEEGIRRVGRSDYFVIE 434

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NR EAI+ AIE+  + D +++AGKGHE   I+ N
Sbjct: 435 NREEAIKKAIEIAGEGDSVLIAGKGHEDYQIIGN 468


>gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
 gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
          Length = 488

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 241/484 (49%), Gaps = 40/484 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  G  +  +G       F Q  + + TT S + +  +LS     G    
Sbjct: 119 TISQLLAQWVELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           I ADD    + +    +A    ++V     F    KV +    + + I    K  D  F 
Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287

Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F V N L+     ++ G     +L   + L  V GR E +   ++
Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNK 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  I
Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE 
Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466

Query: 472 VHIV 475
             I+
Sbjct: 467 YQII 470


>gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 496

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 159/455 (34%), Positives = 223/455 (49%), Gaps = 19/455 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SDSR I+AG IF+A  G   DG  +IP AIA GA  +      +   F      N P   
Sbjct: 28  SDSRQIKAGDIFLACQGEYADGRSYIPAAIANGASFVFWDDDGA---FQWNPEWNVPNQG 84

Query: 95  VDNTRKFLSLFASRLYGK------HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + + +    + A+RLYG        P  I  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 85  IKDLKHRAGILAARLYGNVSDGLSSPLKIWGVTGTNGKTSITQWLAQAAGLLGDKTAIIG 144

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     +D   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+     
Sbjct: 145 TVGNGFWGALEDTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQARVNGVPFQTA 204

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGC 265
            FTNL RDH+DYH T +AY   K RLF     K   A+I +DD Y  E++ R  A     
Sbjct: 205 VFTNLTRDHLDYHGTMEAYGAIKSRLFYWRGLKH--AVINSDDPYGAELIGRLKADRPDL 262

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            V S G+ +   I +    A  +  +V +            L G F   N     G+  A
Sbjct: 263 AVYSYGFGEQADIRITGFAAASDGMEVALDTPWGKGSVKTRLLGRFNAQNLAACVGVLCA 322

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SG 382
            G     VL  LEK+    GR + +   S    + VDYAHT ++LE  L  ++ I     
Sbjct: 323 DGHPLDKVLAALEKIRPATGRMDCI-IESGKPLVVVDYAHTPDALEKALATLQEIKPQGA 381

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IE 441
            +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I A+I+  +P     
Sbjct: 382 ALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPADIIADILPAVPAPECV 441

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           + +R  AI  A++     D++++AGKGHET   V 
Sbjct: 442 EADRKAAIGFAVKNAASDDIILIAGKGHETYQDVA 476


>gi|148360435|ref|YP_001251642.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|296106499|ref|YP_003618199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148282208|gb|ABQ56296.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|295648400|gb|ADG24247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 483

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 252/493 (51%), Gaps = 45/493 (9%)

Query: 25  WRERKI-----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           W +R I     +++ +DSR ++ G +FVA  G   DG L+I +A+A GA A+V       
Sbjct: 10  WIKRDIIDGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLP 69

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQI 136
           Q    T+ +  P + +    + L   A R +  +P   L    VTGT+GK+++A  + Q 
Sbjct: 70  QGI--TLPTAIPCIAIPQLAEKLGEIAKRFFN-NPSQFLGLTGVTGTNGKTTIAYQLAQA 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
               G  S  IG   TI     D       TTP  + L + +     +G+  V +E SSH
Sbjct: 127 HDLLGQHSAYIG---TIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSH 183

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L QHR+D ++     FTNL  DH+DYHQT QAY  AK RLFE    +   AII  DD +
Sbjct: 184 ALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFER--AELQWAIINQDDDF 241

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----- 307
            +++M        + ++ G       + + C +    Q  + + G + +   P       
Sbjct: 242 -QDLMSNVLKTHVKKVTYG-------MHQNCDV-KALQWNMDITGTEIEVKSPWGHQLLK 292

Query: 308 ----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G+F +YN+L      +A G +   V++ + +L   PGR E V   ++   + VDYA
Sbjct: 293 IKALGKFNIYNSLAVYSSLLASGHNPEKVVQVMAELKAAPGRMEIV---AQSPYVLVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE +L  ++ I  GR+ VVFGCGGDRD+ KRPIMGK A   AD  ++T DNPRSE
Sbjct: 350 HTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVITSDNPRSE 409

Query: 424 DPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DPE I  EI  GIP         NR EAI  A+      D++++AGKGHE+   + N + 
Sbjct: 410 DPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESYQQIGNTKH 469

Query: 481 KMSVDCDIIREIL 493
             S D +++R ++
Sbjct: 470 VFS-DQEVVRRLM 481


>gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
          Length = 483

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 160/465 (34%), Positives = 241/465 (51%), Gaps = 37/465 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR I  G IF+A+ G+  DGH FI  AI +GA  + VS   S Q            
Sbjct: 28  MEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARLVFVSKEVSCQ-------QGIGY 80

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145
           +++ N RK L + AS  Y   +    IL VTGT+GK++    ++Q+       R G   +
Sbjct: 81  ILIKNLRKHLGVLASNFYDWPQKKMKILGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEY 140

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG     +        TTP  + L K +     QG+ ++ +E SSH L+  R++ ++  
Sbjct: 141 KIGKEVIEAPN------TTPESLDLIKMIKKAHDQGLEYIVMEVSSHALELGRVNMLEFD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL  DH+DYH+T + YF AK +LF +L  K    I   DD+Y K + +  H    
Sbjct: 195 GAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-GIKIFNIDDSYGKRLWEEFHGVSY 253

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +     QGK +  +       ++++ +S+ G   +    + G F +YN L +  L   +
Sbjct: 254 GMNKADVQGKILAFEG-----GREEIELSLFGNKKECKIQILGGFNLYNLLGSLALVKEL 308

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    +   L  L   PGRFE +    +   + +DYAHT ++LE IL+ ++ I SG+II
Sbjct: 309 GMSDEDIFSKLGNLKGAPGRFETLDC-GQDYMVIIDYAHTGDALENILQAVQEIKSGKII 367

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN- 444
            +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+PE I  E+     GF ++ + 
Sbjct: 368 TIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEEV---KSGFTKENHI 424

Query: 445 ----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               R EAI   I   NK D++++AGKGHET  I+  G KK   D
Sbjct: 425 CILERAEAIAEGIRRANKGDMVLIAGKGHETYQIL--GRKKYHFD 467


>gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 496

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 166/491 (33%), Positives = 250/491 (50%), Gaps = 50/491 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR  + G +F+ + G+K DGH +I QA A GA A++V    S++     I+  
Sbjct: 25  ITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAGGAVAVLVEKEVSVEPGMTVIK-- 82

Query: 90  TPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V +TR  +         Y      ++ VTGT+GK++    ++ I  ++G   +++
Sbjct: 83  -----VSDTRAAMQAITPFFFDYPSQKLRVIGVTGTNGKTTTTHLIRSILMQAG---YKV 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI +   D  L    TTP  + L   L+ + + G+ +  +E SSH L  +R  G +
Sbjct: 135 GLIGTIHTLIGDRTLPVKNTTPDVVDLQGLLAEMVAAGMDYAVMEVSSHALALNRTAGCE 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKEVMK 258
              G FTN+ RDH+D+H T + Y +AK  LF      + +     A+I  DD  +  +++
Sbjct: 195 FDIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNVKTGKSAVINTDDPAAAHMLR 254

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LFPLP----GE 309
                  R ++ G Q          A    + + I  +G  F+      + PL     G 
Sbjct: 255 EVT---YRAITYGVQDG--------ADLTARNINIQADGAKFEAVTTRGIIPLALQITGL 303

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F VYN L A G+ +A GI+  +V   LE    VPGRFE V    +   + VDYAHT + L
Sbjct: 304 FNVYNVLAAIGVALAEGIEPDVVKTALEAFRSVPGRFEIVDAG-QPFTVIVDYAHTPDGL 362

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E ILK  R     RII VFGCGGDRD+ KRPIMG++A + AD+ + T DNPR+EDP  I 
Sbjct: 363 ENILKTARQFAQRRIIAVFGCGGDRDRTKRPIMGRLAAEYADVVVATSDNPRTEDPVSIL 422

Query: 430 AEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            EI  GI   ++ G       +R +AI  A+ +   QD++++AGKGHET  I+ +     
Sbjct: 423 KEIEVGIREGLKPGKSYEVIVDRRQAIERALSLAEPQDIVIIAGKGHETYQILKDKTIPF 482

Query: 483 SVDCDIIREIL 493
             D ++ REI+
Sbjct: 483 D-DREVAREII 492


>gi|51595033|ref|YP_069224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|51588315|emb|CAH19923.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
          Length = 490

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S   
Sbjct: 14  ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q S      
Sbjct: 74  IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 128

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q R
Sbjct: 129 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + 
Sbjct: 189 VAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 246

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   A    ++     G+ G ++   KV    N   +       + +    L G F V N
Sbjct: 247 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 306

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +  G   A +L     L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 307 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 365

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ 
Sbjct: 366 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 425

Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+   G ++    R EA+ +AI    + DV+++AGKGHE   +V N
Sbjct: 426 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 471


>gi|332288557|ref|YP_004419409.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
 gi|330431453|gb|AEC16512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
          Length = 488

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 171/489 (34%), Positives = 257/489 (52%), Gaps = 23/489 (4%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F +   E+ +N +  DSR +QAG +F+ ++G++ DG  F  QA+A GA  +++ S     
Sbjct: 8   FAISLLEQPLNHLQLDSRAVQAGDVFIGLIGHQLDGRKFAAQAVAAGAAVVILESEDPQD 67

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC 137
                   N P + V      LS  A   Y  HP     ++ VTGT+GK++VA+ + Q  
Sbjct: 68  QARIEWHDNIPFIYVYRLAHQLSSLAGAFY-HHPSQKVTLVGVTGTNGKTTVANLLTQWT 126

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
              G  S  +G     + F Q  +    TT S + + + L+   +     V++E SSHGL
Sbjct: 127 HLLGKKSAVMGTIG--NGFYQQVKAATNTTGSAVEIQRNLAEFVAHQADFVAMEVSSHGL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYS 253
            QHR+D ++  A  FTNL RDH+DYH T QAY +AK  LF    +P     II ADD   
Sbjct: 185 VQHRVDALQFAAAVFTNLSRDHLDYHHTMQAYADAKKMLFTGFNVPNR---IINADDEVG 241

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF 310
           K+ +++  +A    L   +Q +    LK    ++++Q VTI+V+      +F   L GEF
Sbjct: 242 KQWLQQMDDAIEVSLQSDFQPQHKRWLKATNLVYHQQGVTITVDSSWGKAVFHSQLIGEF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L+A    +++G   + + + + +L  V GR E      R   I VDYAHT ++L+
Sbjct: 302 NVCNLLLATATLLSLGYSLSCLSDSVNQLQGVCGRMECFTAEGRPTAI-VDYAHTPDALD 360

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R    G++  VFGCGGDRD+GKRP M KIA  LAD  ++TDDNPR+ED   I  
Sbjct: 361 KALRAARLHCDGQLWCVFGCGGDRDKGKRPQMAKIAEQLADHIVITDDNPRTEDAAAIIN 420

Query: 431 EIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           +I+ G+  F         R +A+  A    N  DV++VAGKGHE   I+ + +   S D 
Sbjct: 421 DIVQGLD-FPNNATIIHQRKQALVYAFACANANDVILVAGKGHEDYQIIGHTKHHFS-DR 478

Query: 487 DIIREILGL 495
           +I+ ++L  
Sbjct: 479 EIVSQLLNF 487


>gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
 gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
          Length = 491

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    V++ ++KL  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKKLAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+P  I  +++ G  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEEPGTILDDMVQGANGNNYEVIIDRKEAIYHAISNAKAEDIIIIAGKGHETYQII 466


>gi|304396558|ref|ZP_07378439.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
 gi|304356067|gb|EFM20433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
          Length = 495

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 235/465 (50%), Gaps = 23/465 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + +++ DSR   +G +FVA+ G++ DG  FIPQAIAQG  A+V  +     D      
Sbjct: 20  RPLRDMTLDSRIAASGDLFVAVAGHQVDGRRFIPQAIAQGVAAVVAEAEGEAADGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y + P     + G +G +   +  Q + Q + L    +
Sbjct: 80  HGVPVIYLAQLPQRLSALAGRFY-QQPGEKQTLIGVTGTNGKTTTTQLLAQWATL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  +        TT S + +   L+ L+ +G +  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLVGHLSAAENTTGSAVDVQHLLNDLAEKGASLTAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH   Q+Y +AK  LF E   +   AI+ ADD   +  + R
Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMQSYESAKWLLFSE--HQVGQAILNADDEVGRRWLAR 252

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        L  G  G+++    V    N   +  S    + +   PL G F V N 
Sbjct: 253 LPDAVAVTMENNLQPGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEINSPLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           ++A    +++    A ++    +L  V GR E      +   + VDYAHT ++LE  L+ 
Sbjct: 313 MLALATLLSLDYPLATLINVAPQLQPVNGRMEVFSAAGKP-TVVVDYAHTPDALEKALEA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSEDP+ I  +I+ G
Sbjct: 372 ARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQYADVVVITDDNPRSEDPQAIVNDILTG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +  PG       R +A+   I      D+++VAGKGHE   I+ N
Sbjct: 432 LLDPGRARLVSGRAQAVTNTIMQAQPDDIVLVAGKGHEDYQIIGN 476


>gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
 gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
          Length = 482

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 246/470 (52%), Gaps = 31/470 (6%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV       
Sbjct: 4   FPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERP--- 60

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQIC 137
                 I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +  + +I 
Sbjct: 61  ------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIM 114

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E SSH LD 
Sbjct: 115 RAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDL 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDA 251
            R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A++ +DD 
Sbjct: 175 GRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDN 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++E M+   +    V++ G   +  I  K +         T+    +  +    L G+F
Sbjct: 235 VTEEYMR---STAATVVTYGIDTRSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKF 291

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSN 367
            VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   VDYAHT +
Sbjct: 292 NVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIVDYAHTPD 347

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  
Sbjct: 348 SLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAA 407

Query: 428 IRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I  +++ G  G  +    +R EAI  AI  +   D++++AGKGHET  I+
Sbjct: 408 ILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 457


>gi|52841152|ref|YP_094951.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54296937|ref|YP_123306.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
 gi|52628263|gb|AAU27004.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750722|emb|CAH12129.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
          Length = 483

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 251/493 (50%), Gaps = 45/493 (9%)

Query: 25  WRERKI-----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           W +R I     +++ +DSR ++ G +FVA  G   DG L+I +A+A GA A+V       
Sbjct: 10  WIKRDIIDGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLP 69

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQI 136
           Q    T+ +  P + +    + L   A R +  +P   L    VTGT+GK+++A  + Q 
Sbjct: 70  QGI--TLPTGIPCIAIPQLAEKLGEIAKRFFN-NPSQFLGLTGVTGTNGKTTIAYQLAQA 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
               G  S  IG   TI     D       TTP  + L + +      G+  V +E SSH
Sbjct: 127 HDLLGQHSAYIG---TIGQGKVDALKPLENTTPDALCLQRLMHQYKEGGIKQVCMEVSSH 183

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L QHR+D ++     FTNL  DH+DYHQT QAY  AK RLFE    +   AII  DD +
Sbjct: 184 ALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFER--AELQWAIINQDDDF 241

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----- 307
            +++M        + ++ G       + + C +    Q  + + G + +   P       
Sbjct: 242 -QDLMSNVLKTHVKKVTYG-------MHQNCDV-KALQWNMDITGTEIEVKSPWGHHLLK 292

Query: 308 ----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G+F +YN+L      +A G +   V++ + +L   PGR E V   ++   + VDYA
Sbjct: 293 IKALGKFNIYNSLAVYSSLLASGYNPEKVVQVMAELKAAPGRMEIV---AQSPYVLVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE +L  ++ I  GR+ VVFGCGGDRD+ KRPIMGK A   AD  ++T DNPRSE
Sbjct: 350 HTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVITSDNPRSE 409

Query: 424 DPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DPE I  EI  GIP         NR EAI  A+      D++++AGKGHE+   + N + 
Sbjct: 410 DPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESYQQIGNTKH 469

Query: 481 KMSVDCDIIREIL 493
             S D +++R ++
Sbjct: 470 VFS-DQEVVRRLM 481


>gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 500

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 159/481 (33%), Positives = 252/481 (52%), Gaps = 40/481 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S DSR I  G +FVA+ G   DGH F+  AI  GA A+VV+S+  +   +     +
Sbjct: 22  INNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNGAVAVVVNSSSDVPCLAK--YPD 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++ V++T K L   A+  YG+  E  N++ +TGT+GK++ A+ + ++    G   F  
Sbjct: 80  IQVIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKTTTATLLYKLFLGMG---FGA 136

Query: 148 GPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  STI ++     ++   TTP+ +   + L+ +   G  +  +E SSH   Q R+ G+ 
Sbjct: 137 GLISTIKNYICLEERETINTTPNVLETNRLLADMVRAGCDYCFMEVSSHATVQQRIAGLT 196

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+DYH+T   Y +AK +LF + LP+ + A+  ADD     +++     
Sbjct: 197 FRGAVFTNLTQDHLDYHKTMDNYRDAK-KLFFDHLPQTAFALTNADDRNGNFMLQNT--- 252

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHN-------KQQVTISVEGKD-FDFLFPLPGEFQVYNA 315
             +     Y  + +   K   I N       + +  ++ +GK+ ++   P  G F   N 
Sbjct: 253 --KAQRYTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKERYEVSTPFVGSFNAQNL 310

Query: 316 LV----AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
                 AA LC   GID+  +L  L +L  V GRFE +     G    VDYAHT ++L+ 
Sbjct: 311 TAVFGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVI--RMAGISAIVDYAHTPDALKN 368

Query: 372 ILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +L  I  + S   R++ V GCGGDRD+ KRPIM + A   +D  ++T DNPR+EDP+ I 
Sbjct: 369 VLSTINDVKSPDSRVVTVVGCGGDRDKTKRPIMAQEAAAQSDTLVLTSDNPRTEDPQSIL 428

Query: 430 AEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
            ++  G     +   I   +R +AI+TA ++    D+++VAGKGHE   IV  G++K   
Sbjct: 429 DDMAKGLDKNRLEDTIVIVDRRQAIKTACKLAKSGDIVLVAGKGHENYQIV--GKEKRHF 486

Query: 485 D 485
           D
Sbjct: 487 D 487


>gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 481

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 252/478 (52%), Gaps = 31/478 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  V  DSR +    +FVAI G + DGH FI +A+AQGA A++  +          +
Sbjct: 20  EVEITGVDIDSRKVGEEHLFVAIKGTQVDGHTFIDKAVAQGATAVLCET------MPTQL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V++T   +   A+  YG+  + +  + VTGT+GK+++A+ +  + ++ G   
Sbjct: 74  PQGVTFVQVESTEDAVGPVATMFYGEPSKKLKLVGVTGTNGKTTIATLLYDMFRKFG--- 130

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            + G  ST+ ++ +D  +    TTP PI L   L  +   G  +V +E SSH + Q R+ 
Sbjct: 131 HRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQKRIG 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+    G F+NL RDH+DYH+T + Y NAK   F ++LPK++ AI  ADD  +  VM + 
Sbjct: 191 GLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFF-DMLPKQAFAITNADDK-NGMVMVQN 248

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A  +  S      F    K+   H  + + + + G +    F   G+F V N L    
Sbjct: 249 TRAAVKTYSTRSMADF--KAKILECHF-EGMYLEINGAEVGVQF--IGKFNVSNLLAVYA 303

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G     +L  +  LH V GR + + ++  G    VDYAHT ++LE +L  I  + 
Sbjct: 304 TAVMLGKRPEDILLVMSTLHSVNGRLQPL-SSPEGYTAIVDYAHTPDALENVLNAIHEVL 362

Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +  G++I V G GG+RD+GKRP+M   A+  +D  I+T DNPR EDP+ I  +++ G+  
Sbjct: 363 NGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVIITSDNPRFEDPQAIINDMLAGLNA 422

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                 I   +R EAIRTA  M  K DV++VAGKGHE    +  G K    D ++++E
Sbjct: 423 QQMKKVISIVDRREAIRTACMMAQKGDVVLVAGKGHEDYQEI-EGVKHHFDDKEVVKE 479


>gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 488

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 185/516 (35%), Positives = 269/516 (52%), Gaps = 52/516 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DLI K     +  L I  +  R R I+ + SDSR   AG ++VA+ G   DGH FI
Sbjct: 3   MNLEDLIKK-----VQILDI--LGDRNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+AQGA A+V ++      F   I ++   + V+++ K L   AS  +G   E  N++
Sbjct: 56  DAAVAQGAAAVVCNA------FPENIDTDITYIKVEDSAKALGQLASGFFGNPSEKLNLI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174
            +TGT+GK+SV + +  + +  G  S  I   ST+     D  L    TTP  I L K L
Sbjct: 110 GITGTNGKTSVTTILYDLFKYLGFKSALI---STVEYRIADKVLPSTHTTPDVITLNKIL 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +     G  +  +E SSHG+ Q R + +      FTN+  DH+DYH+T   Y   K   F
Sbjct: 167 AEAVEAGCEYAFMEVSSHGIHQKRTERLHFKIAGFTNISHDHLDYHKTFSEYLKTKQSFF 226

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-- 292
           + L P ++ AI   DD   K +++  +    R        K   LK +   H K   T  
Sbjct: 227 DGLNP-DAVAITNLDDKNGKIMLQ--NTKATR--------KSYALKTMADYHGKTTETDF 275

Query: 293 ----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               ++ +GK+F     L G F VYN L+A  + +  G  S  VL+ +  L  V GRFE 
Sbjct: 276 NGMLLNFDGKEF--WTTLTGRFNVYNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFET 333

Query: 349 VGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI 405
           +   S GG  +V DYAHT ++L+ IL +I  I +   R+I VFGCGG+RDQ KRP MGKI
Sbjct: 334 L--KSDGGIFFVIDYAHTPDALDNILDSINEIRTKNERLITVFGCGGERDQTKRPEMGKI 391

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQD 460
           +   + + I+T DNPRSE+P  I  EI  G+ P +  K     +R +AI+ AI+    +D
Sbjct: 392 STRKSTLTIITSDNPRSENPGDIIKEIEAGVEPQYYSKYTSIPDRRDAIKMAIKFAEPKD 451

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +++VAGKGHE    + NG+K    D + I E+  L+
Sbjct: 452 IVLVAGKGHENYQEI-NGQKVHFDDKETIVELTRLM 486


>gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
 gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
          Length = 490

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/467 (34%), Positives = 234/467 (50%), Gaps = 30/467 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILV 94
           DSR +  G  F+A+ G   DG  F+ QAIA GA A++  +  +S+Q   A  R N P L 
Sbjct: 28  DSRKVMPGDAFLAVQGVASDGRQFVSQAIAAGAVAVLAEAETFSVQQEQAVPRVNFPGL- 86

Query: 95  VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                + +   A+R YG+     N++ VTGT+GK+S+  F++      G     +G   T
Sbjct: 87  ----SRSVGELAARWYGEPGSAMNVVGVTGTNGKTSITWFLRDALNALGHRCALVG---T 139

Query: 153 ISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           +    +DN      TTP PI L   L+ +   G   V++E SSH LDQHRL    +    
Sbjct: 140 LGLGLKDNEQITGHTTPDPITLQAGLARVLEAGADTVAMEVSSHALDQHRLGPTPVSVAV 199

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           F+NL RDH+DYH   +AY  AK  LF     K   A+I  DD  +  ++    + G R +
Sbjct: 200 FSNLSRDHLDYHGDMEAYLAAKSVLFTRDGVKL--AVINCDDPVAYSLVGCLAD-GVRCV 256

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G Q G  +    V          ++V G+ F    PL G F + N +  AG+    G+
Sbjct: 257 TFGDQTGATVRCASVAFTAEGTNAELNVGGESFSVTLPLFGRFNLSNLMAVAGILHGQGV 316

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +  +   L  +  VPGR E V   +    + VDYAHT + LE  L+  R   +GR+  +
Sbjct: 317 STDSLAGALAAITPVPGRMEPV-QQAGCPTVIVDYAHTPDGLEKALQACRAHFAGRLFCI 375

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--- 444
            GCGGDRD GKRP M  +A   AD  + T DNPRSEDP+KI  E+  G+    + G+   
Sbjct: 376 IGCGGDRDTGKRPQMAAVAERGADHVVFTSDNPRSEDPQKIIDEMCAGL---TDTGSVQI 432

Query: 445 ---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              R  A+   ++  +  DV+++AGKGHE    V NG +  S D D+
Sbjct: 433 IVERDRAVMDTVQAASDGDVILLAGKGHEDYQEV-NGVRYPSDDRDL 478


>gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
 gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
          Length = 514

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 170/496 (34%), Positives = 256/496 (51%), Gaps = 38/496 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-------------- 75
           ++E+  DSR +  G +F+A+VG++ DG  +I QAIAQGA A++  +              
Sbjct: 27  LSEMVLDSRLVAKGDVFIALVGHQTDGRHYISQAIAQGATAVIAEAQGQSAPSIPTQQRG 86

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
            +  + +  TI+   PI+ +++  + LS  A + Y +      ++ VTGT+GK+++   +
Sbjct: 87  GFKGEGYITTIQG-VPIVYLNHLNQHLSKLAGQFYHQPGARLKLVGVTGTNGKTTLTQLL 145

Query: 134 QQICQRSGLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            Q  Q  G  S  +G         S  A +N  TT S I + K L++   QG    ++E 
Sbjct: 146 AQWSQALGNISAVMGTLGNGLLQQSLIATEN--TTGSAIDVQKTLNHFVMQGANFAAMEV 203

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL QHR+  +   A  FTNL RDH+DYH     Y  AK +LF     KE   II AD
Sbjct: 204 SSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGDMARYEAAKWQLFSTHHAKEK--IINAD 261

Query: 250 DAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFL 303
           D   +  + +  +A    +       ++G+++  K +   ++ Q VT+  +    +   +
Sbjct: 262 DQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLETKNIN--YHAQGVTLRFDSSWGEGRLV 319

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F V N L+A    +A+      ++  + +L  V GR E      R   + VDYA
Sbjct: 320 SRLLGAFNVSNLLMALATLLALDYPLKKLVATVSQLQAVCGRMEVFNALDRP-TVIVDYA 378

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L   R    G++  VFGCGGDRD+GKR +MG IA   AD  +VTDDNPR+E
Sbjct: 379 HTPDALEKALAAARLHCKGQLWCVFGCGGDRDKGKRALMGGIAEQWADHLVVTDDNPRTE 438

Query: 424 DPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I A+I+ G   I   +   NR EAI + +    +QDV+VVAGKGHE   +V N   
Sbjct: 439 DPGAIVADILSGLVEIRHAVVIHNRAEAINSVVMQAKEQDVVVVAGKGHEDYQLVGNRRL 498

Query: 481 KMSVDCDIIREILGLI 496
             S D  I+ ++LG I
Sbjct: 499 TFS-DRHIVAQLLGAI 513


>gi|332095376|gb|EGJ00399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 5216-82]
          Length = 495

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 249/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VF CGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFSCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
 gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
          Length = 489

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 164/489 (33%), Positives = 258/489 (52%), Gaps = 29/489 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  E  + ++  D+R +Q G +F+A+ G+  DG +F+ QA  +GA AI+  ++    D 
Sbjct: 14  IQAPEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAAAILFDNS----DG 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS----VASFVQQI 136
                 + P + V    + +S  A   Y    +  +++ VTGT+GKS+    +A++ +  
Sbjct: 70  FVPSELSIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKSTCTQLIANWTELF 129

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            QR G+    +G        A +N  TT S I + + L+   ++ V   ++E SSHGL Q
Sbjct: 130 GQRGGVLG-TLGNGLFGQLHATEN--TTGSAISIQQELARFVAEKVDVAAMEVSSHGLVQ 186

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+  ++  A  FTNL RDH+DYH T QAY  AK  +F++  P+    I+ ADDA ++E 
Sbjct: 187 HRVSALQFAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPE--CCILNADDATAREW 244

Query: 257 MKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQ 311
           + +   A   G       + G F++   V   ++ Q +TIS+     D +   PL G+F 
Sbjct: 245 LLQMPQAVVYGIDQQLPEHPGPFVYATDV--KYHPQGITISIHSSWGDGVLSAPLLGKFN 302

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L A  + + +  D   + +   +L  V GR E  G N     + VDYAHT + LE 
Sbjct: 303 VSNLLAALAVMLVLQYDFETLCQTASRLQPVTGRMECFG-NQDQPLVVVDYAHTPDGLEK 361

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R    G +  +FGCGGDRD+GKRP M  IA   AD  I+TDDNPR+EDP  I A+
Sbjct: 362 ALQAARQHCHGHLFCLFGCGGDRDRGKRPQMAAIAEQWADTLILTDDNPRTEDPAAIIAD 421

Query: 432 IIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +  G+       IE  +R +AI+ A+      D++++AGKGHE   I+   EK    D +
Sbjct: 422 MCAGLQKPEQAHIEH-SRPKAIQLALAQAVPGDIILLAGKGHEDYQIIGK-EKHHYSDRE 479

Query: 488 IIREILGLI 496
            + ++LG++
Sbjct: 480 TVMQLLGVM 488


>gi|300949897|ref|ZP_07163860.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|300955951|ref|ZP_07168284.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|301646397|ref|ZP_07246279.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|312970179|ref|ZP_07784361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|300317171|gb|EFJ66955.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|300450729|gb|EFK14349.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|301075367|gb|EFK90173.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|310337677|gb|EFQ02788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|315616136|gb|EFU96755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 3431]
 gi|323171248|gb|EFZ56896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli LT-68]
 gi|325496021|gb|EGC93880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia fergusonii ECD227]
          Length = 471

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 169/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++   +V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|206602137|gb|EDZ38619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Leptospirillum sp. Group II '5-way CG']
          Length = 509

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 242/475 (50%), Gaps = 25/475 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQD----FS 83
           ++  ++ DSR ++ G +F+   G       F+ +A+ +GA  +V   +A+   D     S
Sbjct: 28  RVLNLTDDSRQVEEGALFLIRPGEGFRWE-FVNEALDRGAFYLVADRNAFPEIDSRPALS 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSG 141
           + IR +  + +V+N  + +   AS  +G       ++ VTGT+GK++ +   + +C+  G
Sbjct: 87  SRIRESAGLSLVENLPRSVGQLASSWWGFPSSSLKVIGVTGTNGKTTSSFLTRSVCRAGG 146

Query: 142 LSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L    IG     +     +   TTP  I +    +     G+  VS+E SSH LDQ RL 
Sbjct: 147 LPCGLIGTVVFDVGDGETEAPQTTPGAIQIQSLFAESLQNGLKSVSMEVSSHALDQDRLA 206

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL--FEELLPKESPAIIYADDAYSKEVMK 258
           G       FTNL RDH+DYH+T +AYF AK +L  +E        A+++  D Y   + K
Sbjct: 207 GTIFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGTHPVAVVHTGDEYGARLAK 266

Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                G RVL+ G      I    V    +  + T+     +      L G + + N L 
Sbjct: 267 ELERDGRRVLTYGEGADAMIRPIHVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNILG 326

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A G   A+G+ +  + E +  L  VPGRFE V + + G  + VDYAHT ++L  +L  +R
Sbjct: 327 AVGCGEALGLSTEKIAEGIHSLSGVPGRFERVDSPA-GFSVIVDYAHTDDALSNLLSAVR 385

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +T G++I VFGCGGDRD+GKRP MG +A  L+D  ++T DNPR+E+PE I  EI    P
Sbjct: 386 PVTRGKVITVFGCGGDRDRGKRPRMGNVAGRLSDFVVLTSDNPRTENPESILDEI---EP 442

Query: 438 GFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           G  E G       +R  AI  AI      D +V+AGKGHE   I+  G++K+  D
Sbjct: 443 GLRETGTPYVRVSDRKSAIFDAIRRARSGDAVVIAGKGHENYQIL--GKEKIHFD 495


>gi|152979591|ref|YP_001345220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841314|gb|ABR75285.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           succinogenes 130Z]
          Length = 488

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 163/481 (33%), Positives = 240/481 (49%), Gaps = 27/481 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +  E+  DSR ++ G +FVAI G+  DG  FIP AI + A A++       +        
Sbjct: 19  RFTEMCLDSRSVKTGCLFVAIKGHNVDGRRFIPVAIERHAAAVLAECDNESEHLQVRFER 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSG----- 141
           N P++   N  + LS  A + Y    + ++   VTGT+GK++V+  + Q  +  G     
Sbjct: 79  NIPVISYFNLPEHLSEIADKFYDGPSQRLILTGVTGTNGKTTVSQLLAQWARILGNIPAV 138

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + +   G    + S A     TT S I +  +L+    QG    ++E SSHGL Q R++ 
Sbjct: 139 MGTVGNGLLGQLQSAAN----TTGSAIEVQSSLARFIEQGADFAAIEVSSHGLVQKRIEA 194

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--- 258
           +K  A  FTNL RDH+DYH +  AY +AK RLF  L  K    II ADD   +  ++   
Sbjct: 195 LKFTAVIFTNLSRDHLDYHGSMTAYADAKKRLFTALPSKYQ--IINADDEVGRTWLQELP 252

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           RA    C       Q  ++    +    +  ++  +    D      L G F V N L+ 
Sbjct: 253 RAVAVSCNPDFQPQQKNWLKATALSFTGDGAEIKFASSWGDGVLASRLIGAFNVSNLLLV 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + +G     ++  + +L  V GR E +    +   + VDYAHT ++LE  L+  RT
Sbjct: 313 LATLLCLGYPLQTLIRTVSQLRGVCGRMEMLKAVHKP-TVIVDYAHTPDALEKALQAART 371

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G++  +FGCGG+RD GKRP+M +IA  LAD  IVTDDNPR+EDPEKI A+I     G
Sbjct: 372 HCRGKLWCIFGCGGERDNGKRPMMAQIAESLADRVIVTDDNPRTEDPEKIVADI---TAG 428

Query: 439 FIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           F    N      R  AI  AI+   + DV+++AGKGHE   IV   EK+   D +  ++ 
Sbjct: 429 FARLKNVQIIHAREAAICAAIQSAAENDVILIAGKGHEDYQIVGK-EKRYFSDQETAKKY 487

Query: 493 L 493
           L
Sbjct: 488 L 488


>gi|307629659|gb|ADN73963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UM146]
 gi|315285169|gb|EFU44614.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 110-3]
          Length = 471

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 169/476 (35%), Positives = 245/476 (51%), Gaps = 24/476 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+   G+ +
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
               R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 416 VMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|26246018|ref|NP_752057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227885010|ref|ZP_04002815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
 gi|30316044|sp|Q8FL67|MURE_ECOL6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|26106415|gb|AAN78601.1|AE016755_101 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227837839|gb|EEJ48305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
          Length = 495

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 248/484 (51%), Gaps = 24/484 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  S +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N     S    + R +
Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490

Query: 493 LGLI 496
           LG+I
Sbjct: 491 LGVI 494


>gi|323157848|gb|EFZ43951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli EPECa14]
          Length = 471

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AI+ ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++   +V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
          Length = 483

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 157/489 (32%), Positives = 251/489 (51%), Gaps = 49/489 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+    P  I   +       + +I  V+ DSR I AG +F+A+ G + DGH +I
Sbjct: 3   MKLSDLLKTIQPVHITGST-------DLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA A++       +D     +S    + V ++   +   A+  YG       ++
Sbjct: 56  PAAIEKGAIAVLC------EDLPKEQKSGITYVQVKDSEDAVGKVATAFYGDPTSKMELV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174
            VTGT+GK+++A+ +    +  G   +++G  ST+ ++  D  +    TTP PI L + L
Sbjct: 110 GVTGTNGKTTIATLLYNTFRYFG---YKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLL 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F
Sbjct: 167 GEMADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFF 226

Query: 235 EELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288
           ++ +PK + ++   DD      ++    R +    R LS  ++GK +  H + +    N 
Sbjct: 227 DD-MPKSAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLS-DFKGKVLESHFEGMLLDFNN 284

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++ +   GK           F   N L   G  + +G     VL  L  LH V GRF+ 
Sbjct: 285 HELAVRFIGK-----------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDA 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  + +G    VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +
Sbjct: 334 I-RSPKGFTAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKES 392

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDV 461
             L+D  I+T DNPR E+P+ I  +++ G     +   +   +R EAI+ A  +    DV
Sbjct: 393 ARLSDRVIITSDNPRFEEPQDIINDMLAGLGKDDLQKTVSITDRREAIKAACMLAQPGDV 452

Query: 462 LVVAGKGHE 470
           ++VAGKGHE
Sbjct: 453 ILVAGKGHE 461


>gi|307551929|gb|ADN44704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli ABU 83972]
          Length = 490

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 248/484 (51%), Gaps = 24/484 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 15  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 75  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 129

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  S +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 130 GEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +
Sbjct: 190 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 247

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  S    D +    L G F V N 
Sbjct: 248 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 307

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 308 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G
Sbjct: 367 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 426

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+ +    R EA+  A+    + DV++VAGKGHE   IV N     S    + R +
Sbjct: 427 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 485

Query: 493 LGLI 496
           LG+I
Sbjct: 486 LGVI 489


>gi|170768391|ref|ZP_02902844.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
 gi|170122495|gb|EDS91426.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
          Length = 495

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 168/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + +
Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINSNCHGRWLKAIEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 489 R-LLGVI 494


>gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 494

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 262/514 (50%), Gaps = 55/514 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+         ++    ++  ER  I  +  DSR +    +F+ I G + DGH F
Sbjct: 1   MKLMDLL--------EEIDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I QAI +GA AIV     +  D    ++       V +TR+ ++   S  YG+  +++  
Sbjct: 53  IDQAIKKGAIAIVAQKDMTGLDGVTWVQ-------VKDTRQVMAQLGSTFYGRPSQHLEL 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK+S    +++I +       ++G   TI+++  +  +    TTP  I L + 
Sbjct: 106 IGVTGTNGKTSTTYMIKKILENH---ERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQI 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++ + VT   +E SSH L   R+   +   G FTNL  +H+D+H+    Y  AK +L
Sbjct: 163 FKEMADEKVTECVMEVSSHALALERVAESEFKVGVFTNLTPEHLDFHENIDNYREAKKKL 222

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F          +I  DD +   + +        +++ G       +KK   +  K  +  
Sbjct: 223 F---YLTTVANVINIDDPHGAMIAEEVKKLKPSLITFG-------IKKQATVMAKN-IAT 271

Query: 294 SVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +++   FD + P         +PG F  YNAL +    IAIG+   ++++ ++ +  VPG
Sbjct: 272 TLKDVTFDLVTPVGEARVTVKIPGIFSAYNALASIATSIAIGVPFDVIVQGIQSIPGVPG 331

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           RFE V    +   + VDYAHT +++E +++  + +T  R+I VFGCGGDRD+ KR +MG+
Sbjct: 332 RFESV-LGIKDFSVIVDYAHTPDAIENVIQAAKNVTEHRVITVFGCGGDRDRTKRSVMGE 390

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNK 458
           I+  L+D++++T DNPR+EDP KI   I  GI     KG      +R EAIR A++   K
Sbjct: 391 ISGSLSDLSVITSDNPRTEDPYKILMMIEAGIKK--TKGLYTIIEDRREAIRYAMKEAKK 448

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            D++++AGKGHE    + +       DC + REI
Sbjct: 449 GDIVLIAGKGHEATQQIGSNVIIFD-DCGVAREI 481


>gi|323160117|gb|EFZ46078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli E128010]
          Length = 471

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AI+ ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++   +V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
 gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
          Length = 491

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/484 (31%), Positives = 241/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +     ++N+++ DSR +  G +F+ I G   DGH F  +A   GA AI
Sbjct: 5   ELMQAIPVFTGEASSAIEVNQIAQDSRKVNPGTLFICIDGEIADGHQFAKKAEELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +            T+    P++ V +T++ +++ A+  YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEK---------TVDVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +  QGV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLQGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHSSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD   +E ++        V++ G         K  A      + I+  G  FD  
Sbjct: 236 AVLNADD---EESVRMQTATAAHVITFGI--------KAAADFRASNIQITSHGSTFDLD 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     +  +E +  V GRFE V    +
Sbjct: 285 TPGGHFKLKIKMIGNFSVYNVLAAIATSYALHIPLDNAISTVEAIPGVKGRFELVHA-GQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDY+HT + L  +L+ I      R+ VV GCGGDRD+GKRP M K+A+  A   +
Sbjct: 344 DFPVIVDYSHTPDGLLNVLQTISEFAEKRVFVVVGCGGDRDKGKRPQMAKVAVKYATNPV 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P +I  ++I G+P    ++   NR +AI+ AI      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPREIIEDMIKGVPENDSYVVHENRRDAIQYAISKAETGDVILIAGKGHED 463

Query: 472 VHIV 475
             I+
Sbjct: 464 YQII 467


>gi|300919640|ref|ZP_07136131.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300931788|ref|ZP_07147088.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
 gi|300413280|gb|EFJ96590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300460448|gb|EFK23941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
          Length = 471

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|332762646|gb|EGJ92911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 4343-70]
 gi|333009179|gb|EGK28635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-218]
          Length = 495

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 165/468 (35%), Positives = 242/468 (51%), Gaps = 29/468 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DS    AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSCVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +
Sbjct: 195 AALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
 gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
          Length = 483

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 253/480 (52%), Gaps = 31/480 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  ++ DSR I  G +FVA+ G + DGH FI +AI  GA+A++       +D     
Sbjct: 20  EVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAKAVLC------EDMPENT 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V +T   +   A+  +G     +  + VTGT+GK++VA+ +  + ++ G   
Sbjct: 74  VEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLVGVTGTNGKTTVATLLYNMFRKMG--- 130

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++G  ST+ ++ +D  +    TTP PI L + L  +   G  +V +E SSH + Q R+ 
Sbjct: 131 HKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQKRIG 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+K   G FTNL RDH+DYH+T + Y NAK   F+  L K++ AI  ADD  +  VM + 
Sbjct: 191 GLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDG-LSKDAFAITNADDK-NGMVMVQN 248

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A  +  S      F    ++   H  + + + V+G +    F   G+F V N L   G
Sbjct: 249 CKATIKTYSTRTMADF--RARIIECHF-EGMYLEVDGHEVGVQF--IGKFNVSNLLAVYG 303

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             I +G     VL  +  L  V GR E +  ++ G    +DYAHT ++LE +L  I  + 
Sbjct: 304 AAIMLGKKPEDVLVVMSTLKSVSGRLEPI-RSAEGVTAIIDYAHTPDALENVLSAIHEVL 362

Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +  GR+I V G GG+RD+GKRP+M   A+  +D  I+T DNPR E+P+ I  +++ G+  
Sbjct: 363 NGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVIITSDNPRFEEPQDIINDMLAGLNA 422

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 +   +R EAIRTA  M  K DV+++AGKGHE    +  G K    D +++REI 
Sbjct: 423 QQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKGHEDYQEI-KGVKHHFDDKEVVREIF 481


>gi|327255063|gb|EGE66666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli STEC_7v]
          Length = 471

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++   +V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV+++AGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
 gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
          Length = 489

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 173/492 (35%), Positives = 255/492 (51%), Gaps = 50/492 (10%)

Query: 13  ELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +L+  LS  P  W     N     +  DSR + +G +F  + G   DGH F  +A+A+GA
Sbjct: 2   KLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126
            AIV     S+         + P+++V ++R+ +++ A   YG+  H  +++ VTGT+GK
Sbjct: 62  AAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           ++  S ++QI +++G  +  IG         S+   N  TTP  + L +    +  +GV 
Sbjct: 113 TTTTSIIEQIARKTGKKTGLIGTVHIKVGDRSYPAAN--TTPESLILQRTFKQMVDEGVE 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPK 240
            V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  LF +L     +
Sbjct: 171 FVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDE 230

Query: 241 ESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             P  A++  DD  S+      H     +++ G + K      V A    +Q+ ++  G 
Sbjct: 231 RRPKFAVLNHDDPVSQYY---KHMTAAPIVTYGMREK----SDVMA----EQIRMTAGGM 279

Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            F    P         L G F VYN L AA  C+A G     +   L  +  VPGRFE V
Sbjct: 280 AFRLCTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV 339

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   I VDYAHT +SLE  LK +R +    + VV GCGGDRD  KRP+M ++A+  
Sbjct: 340 -DEGQNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDPSKRPLMAQVAVRY 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVA 465
           AD+AI T DNPRSEDP++I  ++  G+   I K     +R EAIR AI    + DV+++A
Sbjct: 399 ADVAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIA 458

Query: 466 GKGHETVHIVTN 477
           GKGHET  I+ N
Sbjct: 459 GKGHETYQIIGN 470


>gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
 gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
          Length = 484

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 156/486 (32%), Positives = 251/486 (51%), Gaps = 43/486 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I  +  DSR ++AG +FVA+ G + DGH +I +AI +GA AIV  +         T+
Sbjct: 20  DKEIAGIQMDSRLVEAGHLFVAVKGTQTDGHAYIEKAIEKGASAIVCET------LPDTL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +   + V +T   +   A+  YG      +++ VTGT+GK+++A+ +  + ++ G   
Sbjct: 74  NEHVTYIRVADTEDAVGKLATTFYGDPTSKLDLVGVTGTNGKTTIATLLYNMFRKFG--- 130

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +++G  ST+ ++     +    TTP PI L + L  ++ +G  +  +E SSH + Q R+ 
Sbjct: 131 YKVGLLSTVCNYIDGEAIPTDHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSVAQKRIG 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+K   G FTN+ RDH+DYH+T + Y  AK   F+  LPK + A+  ADD  +  VM + 
Sbjct: 191 GLKFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDN-LPKTAFALTNADDK-NGSVMVQN 248

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYN 314
             A     S         L+ +C    K      + + + +  ++ +  F   G F   N
Sbjct: 249 TKAKIATYS---------LRTLCEFKGKVLEDGFEGMLMDINNREVNVQF--IGRFNASN 297

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L   G    +G     VL  L  L  V GRF+ +  + +G    VDYAHT ++L  +L 
Sbjct: 298 LLAVYGAACLLGKQPEDVLLILSTLRPVAGRFDAL-RSKKGYTAIVDYAHTPDALVNVLN 356

Query: 375 NIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            I  +    GR+I V G GG+RD+GKRPIM + A   +D  I+T DNPR E+P+ I  ++
Sbjct: 357 AIHEVLKGRGRVITVVGAGGNRDKGKRPIMAQEAAKQSDRVIITSDNPRFEEPQDIINDM 416

Query: 433 IHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           + G+        +   +R EAIRTA  +    DV++VAGKGHE    +  G K    D +
Sbjct: 417 LAGLTKEDMDKVLSIADRKEAIRTACMLAQAGDVILVAGKGHENYQEI-KGVKHHFDDKE 475

Query: 488 IIREIL 493
           ++ EI 
Sbjct: 476 VLAEIF 481


>gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM
           273]
 gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 168/480 (35%), Positives = 246/480 (51%), Gaps = 32/480 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++DSR ++ G +FVA+ G   DG  FI  AIA+GA A+V       +DF   +  N
Sbjct: 37  VRMLTNDSRVVEPGSLFVAVRGFAADGRGFIKDAIARGASAVVS------EDFPMELALN 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P  +     +     A+  Y  HP +   I+ VTGT+GK++ A  +  I   +G+S   
Sbjct: 91  GPPCIRVPDARRALSLAAAAYYGHPADRLRIVGVTGTNGKTTTARLISSILSMNGISCGY 150

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           IG   T  +   D  +    TTP    L +    +   G   VS+E SSH L+  R+ GI
Sbjct: 151 IG---TGKAIIGDREIPLERTTPEAHGLHRLFRMMVDGGCRAVSMEVSSHALELGRVHGI 207

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260
              A  FTNL  DH+D+H + ++Y  AK +LF++L P     I   +D  +  +  R   
Sbjct: 208 AFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQLAPG-GIGIFNTEDPMATFMAARVAE 266

Query: 261 -HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------EGKDFDFLFPLPGEFQVY 313
              A C + + G+ G    L    A+  ++ V  SV      EG   +  F L G F V 
Sbjct: 267 EQRACCSLDAAGFGGMRCGLN-YGAMVRREGVGSSVVALSFPEGVQPEEEFRLLGRFNVM 325

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L AA     +G+ +  V   L  L  V GR E V      G   VDYAHT ++L   L
Sbjct: 326 NMLEAAAAAHQLGVPARDVAASLPGLQGVEGRMEQVEGPGFEGTAIVDYAHTPDALHQSL 385

Query: 374 KNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI--R 429
             +R +    GR++VVFGCGG+RD+ KRP MG+IA+++AD +++T DNPR EDPE I   
Sbjct: 386 GTLRELLPPDGRLLVVFGCGGNRDRQKRPEMGRIAIEMADFSVITSDNPRDEDPEAILDE 445

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            E   G    +   +R EAIRTA+ ML   D+L+VAGKGHE  +  T+G ++   D +++
Sbjct: 446 IEGGMGGGEHLRIPDRAEAIRTAVGMLRSGDILLVAGKGHE-CYQETHGRREHFSDREVL 504


>gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
 gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
          Length = 505

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 168/473 (35%), Positives = 247/473 (52%), Gaps = 25/473 (5%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P++  E +I+ ++ DSR + +G +F A+ G+  DG  +I  AI  GA AI+  +     
Sbjct: 23  LPLELTEIQIDAITLDSREVISGSLFTAVNGHTVDGRRYIETAIKAGASAIIAEADGIAN 82

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQIC 137
           +    ++    I+ + +    LS  A R +  HP+  LA   VTGT+GK++++  + Q  
Sbjct: 83  EGDIALKDGVYIIYLQDLNHKLSAIAGRFF-DHPDQKLALYAVTGTNGKTTISQLLAQWA 141

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +G  +  +G T   + +  +    TT S I + + LS L  QG    ++E SSHGL Q
Sbjct: 142 NLAGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLSQLVEQGADFTAMEVSSHGLVQ 201

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  I   A  FTNL RDH+DYH   Q Y NAK  LF E   +   AII ADDA     
Sbjct: 202 GRIRDIHFKASIFTNLSRDHLDYHGCMQNYANAKKSLFTE--HQSRMAIINADDAVGASW 259

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLK-KVCAIH---NKQQVTISVE-----GKDFDFLFPLP 307
           +K   NA    +++  Q    H   K+ A     + Q VTI  +     GK   F  PL 
Sbjct: 260 LKDIPNA--VAVAIDPQAVANHAGLKLWATDVRFSTQGVTIEFDSSWGLGK---FTAPLV 314

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F   N L+A    +A     A +LE   +L  V GR E V  ++    + VDYAHT +
Sbjct: 315 GSFNATNLLLALATLLATNHSMADLLEKAPQLQAVIGRME-VFQDTDKAMMVVDYAHTPD 373

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R    G++  +FGCGGDRD GKRP+M +IA  L+D  I+TDDNPRSEDP  
Sbjct: 374 ALEKALQALRVHCDGKLWCIFGCGGDRDNGKRPMMAEIAERLSDCIILTDDNPRSEDPNG 433

Query: 428 IRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I  +++ G+          +R  A R A+   ++QD+++VAGKGHE   I+ +
Sbjct: 434 IVDDMLTGLISPESATIIHDRETACRHALTHASRQDIILVAGKGHEDYQILAD 486


>gi|322834425|ref|YP_004214452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
 gi|321169626|gb|ADW75325.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
          Length = 495

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 238/472 (50%), Gaps = 16/472 (3%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+ G+  DG  FIPQAIAQG  A+V  +    Q  +       P++ +
Sbjct: 28  DSRVAAAGDLFVAVSGHTSDGRRFIPQAIAQGVAAVVAEAKGEQQHGTVCQMHGVPVVYL 87

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++    LS  A R Y + P   L + G +G +   +  Q + Q S L         T+ +
Sbjct: 88  EDLNILLSELAGRFY-QQPGKELRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGN 146

Query: 156 FAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
              DN +    TT S + +   L+ L   G T  ++E SSHGL QHR+  +   A +FTN
Sbjct: 147 GLLDNVIPAENTTGSAVQVQHILADLVKLGATFAAMEVSSHGLVQHRVAALPFAAAAFTN 206

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-- 269
           L RDH+DYH   Q+Y +AK +LF     +    II ADD      + +  NA    +   
Sbjct: 207 LSRDHLDYHGDMQSYEDAKWQLFAS--HQVGQKIINADDEVGARWLAKTPNAIAVSMEDK 264

Query: 270 --VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G+ G+++  + V    N   V I     +      L G F V N LVA    +++  
Sbjct: 265 IPAGWSGRWLVARSVNYHDNGATVNIDSSWGEGKLESRLMGAFNVSNLLVALATLLSLDY 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +L    +L  V GR E      +   + VDYAHT ++LE  L   R    G +  V
Sbjct: 325 PLAQLLATASQLQPVCGRMEVFNAPGKPTAV-VDYAHTPDALEKALAAARLHCRGTLWCV 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEK-GN 444
           FGCGGDRD+GKRP+MG IA   AD  IVTDDNPRSE+P  I A+I+ G+   G +++   
Sbjct: 384 FGCGGDRDKGKRPLMGAIAEQYADRVIVTDDNPRSEEPRAIVADILAGLLDAGRVQEIHG 443

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R EA+ +AI    + DV+++AGKGHE   +V N     S    + R +LG+I
Sbjct: 444 RAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNQRLDYSDRVTVAR-LLGVI 494


>gi|326771701|ref|ZP_08230986.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
 gi|326637834|gb|EGE38735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
          Length = 528

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 236/463 (50%), Gaps = 38/463 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DS     G +FV + G    G  F   A+A GA A V++ A   Q    T    TP+
Sbjct: 50  VSVDSADTVPGELFVGLPGFTVHGARFAADAVASGAVA-VLTDADGAQIVHQTA-PGTPV 107

Query: 93  LVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQI-------CQRSGL 142
           LV  + R  +   ++ +Y  HP   L   AVTGT+GK++ A F+  I       C  +G 
Sbjct: 108 LVHSDPRAVVGPLSAEVY-HHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGT 166

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              ++G  S  S      R T  +P+ L + ++      V   S+EASSH +  HRLDGI
Sbjct: 167 VELRVGERSVESP-----RTTVEAPV-LQRMMALAVEDKVGAASLEASSHAIVLHRLDGI 220

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +    FTNL RDH+D+H+T + Y  AK +LF     +    ++  DD +   +   A  
Sbjct: 221 VVDVAGFTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARR--GVVCVDDQWGAALAAEAPI 278

Query: 263 AGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNAL 316
              RV +  Y G+     ++    V    +    T+   +G+  +   PLPG   V NA 
Sbjct: 279 EIDRVRA--YPGETPADWWVSDAAVSLTDSATTFTLHGPDGEKIEASCPLPGLVNVQNAA 336

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKN 375
           +A  + I  G+ +A     L   H +PGR + +   + R G   VD+AHT +++E+ LK 
Sbjct: 337 LALVMAIRAGVPAATAAMALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPDAMELALKA 396

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R IT GR+IVVFG  GDRDQGKRP++G++   LAD+ +VTD+NPRSEDP+ IR  I+ G
Sbjct: 397 VRPITPGRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEG 456

Query: 436 IPGFIEKGNRIE--------AIRTAIEMLNKQDVLVVAGKGHE 470
           + G       +E        A+R  +E+    D ++V GKGHE
Sbjct: 457 VRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHE 499


>gi|320540410|ref|ZP_08040060.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
 gi|320029341|gb|EFW11370.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
          Length = 495

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 235/471 (49%), Gaps = 35/471 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +    +D +    
Sbjct: 20  RALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEANGQAEDGAIVEM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              PI+ +    + LS  A R Y   P   L + G +G +   +  Q + Q S L    +
Sbjct: 80  HGVPIIYLSQLNQRLSALAGRFY-HQPAERLRLVGVTGTNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + L   L+ L+ QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLNHVCPAENTTGSAVDLQHQLNDLAEQGATFAAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  F+NL RDH+DYH     Y  AK  LF          I+ ADD   +  + +
Sbjct: 195 AALPFAAAVFSNLSRDHLDYHGDMANYEAAKWTLFAG--HDVGQMIVNADDQVGQHWLSK 252

Query: 260 AHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +      G  G+++    +    N   +  S    D +    L G F V N 
Sbjct: 253 LPDAVAVTMQDNLLPGCHGRWLKTTAISYHDNGATLRFSSNWGDGEIASQLMGAFNVNNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G     ++E   +L  V GR E      +   + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALGYPLDKLVETGSRLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALEA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    GR+  VFGCGGDRD+GKRP+MG IA   AD  ++TDDNPR+E+P+ I  +I+ G
Sbjct: 372 ARLHCQGRLWCVFGCGGDRDKGKRPLMGGIAEQFADRVVLTDDNPRTEEPQAIINDILAG 431

Query: 436 ---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                    IPG      R EA+ +AI    +QDV++VAGKGHE   +V N
Sbjct: 432 LLDAGQALVIPG------RAEAVTSAIMQAQEQDVVLVAGKGHEDYQLVGN 476


>gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 487

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 161/512 (31%), Positives = 259/512 (50%), Gaps = 50/512 (9%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L+D++YK     ++   S+         +N++  DSR IQ   +FVAI G   DGH +
Sbjct: 2   MILKDILYKVTINAVVGSTSV--------SVNKIEFDSRQIQVNDVFVAISGTVTDGHRY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I + I  GA  IV             ++ +   + V N+ K L+  A+  Y    EN+  
Sbjct: 54  IDRVIDAGATTIVCEV------LPEALKDDVTYIEVANSNKALAYMAANFYEHPSENLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT----PSPIYLAKA 173
           + VTGT+GK++V+S + Q+ +++G   +++G  ST+               P  + + + 
Sbjct: 108 IGVTGTNGKTTVSSLLYQLFKKAG---YKVGLLSTVKIMVDTTTYKATHTTPDSLTINRY 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  ++ +GV    +E SSHG+ Q R +G++   G FTNL  DH+DYH T   Y + K +L
Sbjct: 165 LKQMNDEGVEFCFMEVSSHGIHQSRTEGLRFTGGIFTNLSHDHLDYHDTFAEYRDVK-KL 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LPK++ A+   DD             G  +L      K+ +  K  A +  Q +  
Sbjct: 224 FFDQLPKDAFALSNMDD-----------KNGLAMLQNTQAKKYTYALKNYADYRAQILEN 272

Query: 294 SVEG-----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              G      D +    L G F  YN L   G    +G++   +L  + +L  V GRF++
Sbjct: 273 EFSGLLLKVNDSELWTRLIGSFNAYNILAIYGTAELLGLEKDEILRLISELENVSGRFQY 332

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIA 406
             ++ +   + VDYAHT ++L+ +L+ I  I +    +I V GCGGDRD+ KRP M  IA
Sbjct: 333 FISDEKITAV-VDYAHTPDALKNVLETINNIRTKNEELITVVGCGGDRDKTKRPKMAHIA 391

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDV 461
             L+   I T DNPRSE PE I  ++  G+ P   +K     +R +AI+TA +M + +D+
Sbjct: 392 STLSTKVIFTSDNPRSEVPETIIEDMEKGVEPQNFKKTLSITDRKQAIKTACQMADTRDI 451

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHET   +  GE+    D   ++E+L
Sbjct: 452 ILIAGKGHETYQEI-KGERFDFDDYKTVQELL 482


>gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
 gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
          Length = 484

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 158/489 (32%), Positives = 253/489 (51%), Gaps = 49/489 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++I       +N+L    +   +R I  +  DSR +  G +FVAI G + DGH +I
Sbjct: 1   MKLEEIIK---AVTVNEL----IGSADRDITGIQIDSRLVGPGHLFVAIKGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA  IV       +     IR     + + +T   +   A+  YG      +++
Sbjct: 54  QKAIENGACGIVC------EQLPEEIRPEVTYIRLADTEGAVGKLATAFYGDPTSKLDLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174
            VTGT+GK+++A+ + ++ ++ G   +++G  ST+ ++  D  +    TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYKMFRQFG---YKVGLLSTVCNYIDDEAIPADHTTPDPITLNRLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ +G  +  +E SSH + Q R+ G++   G FTN+ RDH+DYH+T + Y  AK   F
Sbjct: 165 GRMADEGCKYAFMEVSSHAIAQRRIAGLRFAGGIFTNITRDHLDYHKTFENYLKAKKAFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------ 288
           +  LPK + A+   DD   K +++   N   R+ +         L+ +C    K      
Sbjct: 225 DN-LPKSAFALTNLDDKNGKVMVQ---NTKARIAAYS-------LRTLCDFKGKVLEDGF 273

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             + + +  ++ +  F   G F   N L   G    +G  S  VL  L  L  V GRF+ 
Sbjct: 274 DGMLLDINNREVNVRF--IGRFNASNLLAVYGAACLLGKPSEEVLIALSTLCPVAGRFDA 331

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  + RG    VDYAHT ++L  +L  I  +    GR+I V G GG+RD+GKRP+M + A
Sbjct: 332 L-RSRRGYTAIVDYAHTPDALVNVLNAIHEVLRGQGRVITVVGAGGNRDKGKRPLMAQEA 390

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDV 461
           +  +D  I+T DNPR EDP+ I  +++ G+     K      +R EAIRTA  +   QDV
Sbjct: 391 VKQSDKVIITSDNPRFEDPQDIINDMLAGLDKDDMKKVLSIVDRKEAIRTACMLAQPQDV 450

Query: 462 LVVAGKGHE 470
           +++AGKGHE
Sbjct: 451 VLIAGKGHE 459


>gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
 gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
          Length = 498

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 163/495 (32%), Positives = 258/495 (52%), Gaps = 54/495 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+D+ YK  P L    S+        ++  ++ DSR    G +F+A+ G   DGH +I
Sbjct: 7   MQLKDIFYK-IPLLATSGSM------NTEVTSLTMDSRKAGPGSLFIAVRGTVTDGHAYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI QGA AI+       ++  A    +   + V N+ + + L A+  Y +  + +  +
Sbjct: 60  ETAIQQGATAILC------EEIPAETNPDVAYIRVQNSARTMGLVAANFYDQPSQKLKLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174
            VTGT+GK+SVA+ + ++ +  G   ++ G  ST+ +   D+ +    TTP  I   + L
Sbjct: 114 GVTGTNGKTSVATLLFRLFRALG---YRCGLLSTVQNQIDDDVIPATHTTPDVITTNQLL 170

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + + + G THV +E SSH + Q R+ G+  + G FTN+  DH+D+H T   Y  AK   F
Sbjct: 171 TKMLAHGCTHVFMEVSSHAVVQERIAGLSFVGGIFTNITHDHLDFHGTFDNYIRAKKGFF 230

Query: 235 EELLPKESPAIIYADDAYS----KEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288
           ++ LP  + A+   DD       +  + R      + L+  ++GK +   L  +  + ++
Sbjct: 231 DQ-LPASAFALTNVDDKRGLVMLQNTVARKETYSLQTLA-SFKGKILADSLFGLNMLIDE 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           ++V            F L G+F  YN L   G  I +G D   VL  L  +   PGRFE 
Sbjct: 289 REV-----------WFKLIGQFNAYNLLSVYGTAILLGEDPTEVLTMLSGITPPPGRFEQ 337

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-------RIIVVFGCGGDRDQGKRPI 401
           V ++ +   I VDYAHT ++L+ +L+ I  + S        +II V GCGG+RD  KRPI
Sbjct: 338 VVSDDKIVGI-VDYAHTPDALQNVLETINELRSTDEQDYMPQIITVVGCGGNRDTSKRPI 396

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKG----NRIEAIRTAIEML 456
           M  IA  L++  I+T DNPR+EDP  I  ++  G+ P   +K     +R EAIR A+E+ 
Sbjct: 397 MADIACRLSNRVILTSDNPRNEDPMDILEQMQAGVSPVDFKKTITIEDRHEAIRKAVELA 456

Query: 457 NKQDVLVVAGKGHET 471
              D+++VAGKGHET
Sbjct: 457 KPHDIILVAGKGHET 471


>gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli GR56]
          Length = 256

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 125/247 (50%), Positives = 161/247 (65%), Gaps = 13/247 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSRH+  G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S     Q   A+I    P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 78  VDAAGRGAAVAIAS-----QPVDASI----PVLAVKEPRRFLSIAAARFYGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDRLLP 248

Query: 240 KESPAII 246
           K +PA+I
Sbjct: 249 KGAPAVI 255


>gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus
           influenzae F3031]
 gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae F3031]
          Length = 488

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 240/484 (49%), Gaps = 40/484 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVAFIGNVPVVKYHQLSRHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  G  +  +G       F Q  + + TT S + +  +LS     G    
Sbjct: 119 TISQLLAQWVELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGAGFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           I ADD    + +    +A    ++V     F    KV +    + + I    K  D  F 
Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287

Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F V N L+     ++ G     +L   + L  V GR E +   ++
Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  I
Sbjct: 348 P-IVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+E   +I  +I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE 
Sbjct: 407 VTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466

Query: 472 VHIV 475
             I+
Sbjct: 467 YQII 470


>gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
 gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
          Length = 523

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/472 (32%), Positives = 249/472 (52%), Gaps = 19/472 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--S 83
           ++R+IN +S DSR +  G +F A  G ++ GH +I  A+ +GA A+       L     +
Sbjct: 40  QDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGAAVGKGAVAVAYDPIIPLSSVVHA 99

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
                + P++ + +    L + A R Y +  +   ++ VTGT+GK+SV+ F+ Q   +  
Sbjct: 100 GLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVMGVTGTNGKTSVSHFLAQALHQQE 159

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                IG     +    + ++LTTP  + + + L+   + G  +  +E +SH L+Q R++
Sbjct: 160 APCGLIGTLGVGLMGALKPSQLTTPDAVTVQEQLAVTRAAGGRYAVMEVTSHALEQGRVN 219

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+      FTNL R+H+DYH     Y  AK RLF +  P    A+I  DD   +  +  A
Sbjct: 220 GVIFNTAIFTNLSREHLDYHGDMTRYGAAKFRLFGQ--PGLRHAVINVDDTAGEAFL--A 275

Query: 261 H-NAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFPLPGEFQVYNAL 316
           H  A   V+S G       L+ V  +H +++ + ++++G   + + + PL G F  YN L
Sbjct: 276 HLPAEVTVISYGLTNPQASLR-VNELHCDRRGIVMNIQGPWGEGELICPLLGRFNAYNLL 334

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  +  G+     L+ L ++  V GR E +G  +    + VDYAHT ++LE  L ++
Sbjct: 335 AALGGLLTTGMPFTEALQRLSQVQAVAGRMEPMGGAAGEPLLVVDYAHTPDALEQALCSL 394

Query: 377 RT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           R       R+  VFGCGG+RD+GKRP+MG +A   AD  ++TDDNPR EDP +I  EI+ 
Sbjct: 395 RAHLEPGARLWCVFGCGGNRDRGKRPLMGAVAERWADFVMLTDDNPRDEDPRQIIIEILS 454

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           G+       +  +R EAI  A+E+   +D++++AGKGHE    V   ++  S
Sbjct: 455 GMEAPDRVYQLRDRAEAISRAVELAGSKDIVLIAGKGHEEYQQVGTEQRPFS 506


>gi|300905494|ref|ZP_07123258.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300923133|ref|ZP_07139193.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|301303815|ref|ZP_07209935.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|301330134|ref|ZP_07222803.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|300402644|gb|EFJ86182.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300420588|gb|EFK03899.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|300840942|gb|EFK68702.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|300843881|gb|EFK71641.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|315253159|gb|EFU33127.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 85-1]
          Length = 471

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AI+ ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++   +V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 502

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/466 (32%), Positives = 237/466 (50%), Gaps = 25/466 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRSNTP 91
           V+ DSR ++ G +F+A  G+  DG  +I +AIA GA A+    A +   DF+        
Sbjct: 30  VTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGTPDFAWNRTWQVA 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V   R+     A+ +YG+  E  +++AVTGT+GK+SV+ ++     R       +G 
Sbjct: 90  NLAVAGLRELCGPLANAIYGRPSERLSLIAVTGTNGKTSVSQWIAATHPRRCAVIGTLG- 148

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + +     +   TTP+   L + L+  +       ++EASS G+ + RLDG ++    F
Sbjct: 149 -AGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASSIGIAEGRLDGARVDVAVF 207

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH T  AY  AK RLF    P+   A+   DD + +E+   A +   +V+ 
Sbjct: 208 TNLTRDHLDYHATMAAYAQAKARLFA--WPRLRLAVSNLDDPFGRELA--ALSTATKVIG 263

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAG 320
              Q      +      N ++   +++G  F    P         L G + V N L  A 
Sbjct: 264 YTQQAGADDRQGTIRAENIEE---TIDGLRFRLCAPNGRALVESGLLGRYNVSNLLAVAA 320

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + I  G+    V E   +L   PGR E +G ++    + VDYAHT ++LE  L  +R + 
Sbjct: 321 VLIDAGLTPKAVAERFAQLSSPPGRLEKIGGHNEP-LVIVDYAHTPDALESALMALRPVA 379

Query: 381 SGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           + R   ++V+FGCGGDRD+GKRP+M  +A   AD  ++T DNPRSE+   I A+I+ G P
Sbjct: 380 NARGAGLVVIFGCGGDRDRGKRPLMAAVAARHADRVVLTSDNPRSENEHAILADILAGAP 439

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             +   +R EAIR  +   +  DV+++AGKGHE    +    +  S
Sbjct: 440 TALVIADRGEAIRRTLLAAHPADVVLIAGKGHEPYQEIAGVRRPFS 485


>gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 484

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 160/479 (33%), Positives = 253/479 (52%), Gaps = 31/479 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I  V+ DSR I+A  +F+A+ G + DGH +I  AI +GA A++       +D      
Sbjct: 21  KEIVGVNIDSRKIEANHLFIAVKGTQVDGHRYIETAIEKGAVAVLC------EDLPEVKA 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            +   + V +T +   + A+  YG+  + +  + VTGT+GK+++A+ +  + ++ G   +
Sbjct: 75  PHVTYIQVQDTTQAAGVVATIFYGEPSKKVKLVGVTGTNGKTTIATLLYNLFRKLG---Y 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G  ST+ ++ +D  +    TTP PI L   LS +   G  +V +E SSH + Q R+ G
Sbjct: 132 KCGLLSTVCNYIEDEAVPADHTTPDPIALNYLLSRMVEAGCDYVFMECSSHAIAQKRIAG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G FTNL RDH+DYH+T + Y +AK   F+  LPK S AI  ADD   K  M    
Sbjct: 192 LHFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDS-LPKTSFAITNADD---KNGMYMVQ 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N    V +   +       ++   H  + + + ++G++    F   G+F V N L   G 
Sbjct: 248 NTKATVKTYSARSLADFKARIIECHF-EGMYLEIDGREVGVRF--IGKFNVSNLLAVYGA 304

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +      +L  L  L  V GR E +  +  G    VDYAHT ++LE +L  I  + +
Sbjct: 305 SVMLQQQPENILLALSTLQSVSGRLEPI-YSPEGFTCIVDYAHTPDALENVLLAIHDVLN 363

Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G++I V G GG+RD+GKRP+M + A+  +D  I+T DNPR EDP+ I  ++  G+   
Sbjct: 364 GKGKVITVCGAGGNRDKGKRPLMAQEAVKQSDKVILTSDNPRFEDPQDILNDMKEGLNNA 423

Query: 440 IEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             K      +R EAIRTA  +  K DV++VAGKGHE    + NG K    D +++ EI 
Sbjct: 424 QLKKTLTIVDRKEAIRTACSLAQKGDVVLVAGKGHEDYQEI-NGVKHHFNDKEVLYEIF 481


>gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
 gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
          Length = 485

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 160/511 (31%), Positives = 259/511 (50%), Gaps = 42/511 (8%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+LQD++Y      L+   S        R++  +  DSR +    +F AI G   DGH +
Sbjct: 1   MQLQDVLYGITITSLVGNTS--------REVTALVFDSRKVVKDSVFFAIRGTMSDGHQY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
           I   +  GA  ++      ++      R     + V+N+   L   A+  YG HP +   
Sbjct: 53  IDDTVEAGASVVICEVLPEIR------RELATYIQVENSSVALGQMAANFYG-HPSSKLK 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAK 172
           ++ +TGT+GK+++A+ + ++ +  G   + +G  ST+ +   D    +  TTP PI L +
Sbjct: 106 LIGITGTNGKTTIATLLFKLFRELG---YGVGLISTVQNHINDVVVPSTHTTPDPIALNE 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +   G  +  +E SSH + QHR++G+    G F+N+  DH+D+H T   Y  AK  
Sbjct: 163 LLQSMVDDGCEYCFMEVSSHAVSQHRIEGLTFRGGVFSNITHDHLDFHHTFDNYIKAKKA 222

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F+ +LP  + A+   DD  +  VM +   A  +  ++     F    K   I N     
Sbjct: 223 FFD-VLPANAFALTNLDDR-NGMVMLQNTKATKKTYALKQLADF----KAKIIENSFS-G 275

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + ++    D  F L G F  YN L   G  + +G +   VL  L  L    GRF++V + 
Sbjct: 276 LHLDIDQADVFFKLVGSFNAYNLLAVYGTAMMLGEEQLAVLTALSNLTGAEGRFDYVSSK 335

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +   I VDYAHT ++++ +L  I+ I  G  ++I + GCGGDRD+ KRP+M ++A D +
Sbjct: 336 QQIIGI-VDYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPVMAQVACDWS 394

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T DNPR+EDP+ I +E+  G+    ++      +R EAI+TA  +    D++V+A
Sbjct: 395 DKVILTSDNPRTEDPQTILSEMEAGVSPTNKRKTLSILDRREAIKTACHLAKPGDIIVLA 454

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GKGHE    + NG K    D +I+ E L LI
Sbjct: 455 GKGHEKYQDI-NGVKYHFDDKEILTEQLNLI 484


>gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
 gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
          Length = 522

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 167/498 (33%), Positives = 256/498 (51%), Gaps = 53/498 (10%)

Query: 6   LIYKDFPELINQLSIFPMQ--WR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
            + +  PELI  L   P+Q  W     +  +  ++ + R  Q G+IFVA  G + DGH F
Sbjct: 4   FVRRTLPELIRHL---PIQVFWEGTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENI 117
           IP AI +G  A+V      +Q+ S     + P L V N+R+ L+  ++  Y    H   +
Sbjct: 61  IPHAIERGIVAVV-----GMQEISGL---SIPYLRVSNSREALAYLSAAFYNFPAHEMTV 112

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLA 171
           + VTGT GK++ ++ + QI   +G S+   G  ST+++   D        +TTP    + 
Sbjct: 113 IGVTGTDGKTTTSNLIYQILLAAGHSA---GIVSTVNAVIGDEVVDTGFHVTTPEAPEVQ 169

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + LS + + G+THV +EA+SHGL+QHR+ G +   G  TN+  +H+DYH + +AY  AK 
Sbjct: 170 RYLSRMRAAGLTHVVLEATSHGLEQHRVTGCEFDVGVVTNITHEHLDYHGSYEAYRAAKG 229

Query: 232 RLFEEL-----LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVC 283
           RLF  L      P  +P  A++  DD  S E ++       RV +V Y   +   L+   
Sbjct: 230 RLFTMLSETPEKPHGNPRLAVLNRDDQ-SYEYLQSL----VRVPAVSYGLAEGADLRAEN 284

Query: 284 AIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLH 340
             +   ++   + G+DF       L GE+ V N L A A   + +GIDS    + +  + 
Sbjct: 285 IRYEADRLRFDIVGRDFRQPVETCLVGEYNVSNCLAAFAATVLGLGIDSQHAAQGIANMS 344

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGR E +        I VD+AHT N+L+  L   R IT GR+I VFG  G RD+ KR 
Sbjct: 345 GVPGRMERIHMGQSFHAI-VDFAHTPNALKQALLTARQITRGRVIAVFGSAGLRDREKRR 403

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTA 452
           +M +++  LADI+I T ++PR+E  E I  E+  G           F    +R +AIR A
Sbjct: 404 LMAEVSAQLADISIFTAEDPRTESLEGILEEMARGAESQGAVRGKQFYLVPDRGDAIRMA 463

Query: 453 IEMLNKQDVLVVAGKGHE 470
           ++M    D+++  GKGHE
Sbjct: 464 VQMAKPDDLVIACGKGHE 481


>gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
 gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
          Length = 482

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 245/470 (52%), Gaps = 31/470 (6%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV       
Sbjct: 4   FPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERP--- 60

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQIC 137
                 I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +  + +I 
Sbjct: 61  ------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIM 114

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E SSH LD 
Sbjct: 115 RAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDL 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDA 251
            R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A++ +DD 
Sbjct: 175 GRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDN 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++E M+   +    V++ G      I  K +         T+    +  +    L G+F
Sbjct: 235 VTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKF 291

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSN 367
            VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   VDYAHT +
Sbjct: 292 NVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVV----DGGQNYTVIVDYAHTPD 347

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  
Sbjct: 348 SLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAA 407

Query: 428 IRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I  +++ G  G  +    +R EAI  AI  +   D++++AGKGHET  I+
Sbjct: 408 ILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 457


>gi|207721509|ref|YP_002251949.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
 gi|206586669|emb|CAQ17255.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
          Length = 514

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 242/485 (49%), Gaps = 32/485 (6%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA ++GN   + DG   IPQAI  GA A++  +   +    A +R
Sbjct: 32  DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               IL VD   +     A++ Y   G     ++ VTGT+GK+S + ++ Q   R G   
Sbjct: 92  ----ILPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +G   T  + +       TTP  I L ++L+ L   G   V++E SSHGL+Q R DG 
Sbjct: 148 AVVGTLGTGFVDTLVATG-FTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGRADGT 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---- 258
           +     FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    ++     
Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLTGLRA 264

Query: 259 --RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYN 314
              A   G    +   +G    L+      ++   T  V+G         P+ G F V N
Sbjct: 265 DIEAVEYGIDGEAAAQRGARHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSN 324

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L   G+ +  G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L+
Sbjct: 325 QLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTLR 383

Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP++I   
Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDM 443

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G+      ++  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D + 
Sbjct: 444 IADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQEIA-GRKRPFSDQEH 502

Query: 489 IREIL 493
           +R  L
Sbjct: 503 VRLAL 507


>gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate
           ligase protein [Xanthomonas albilineans]
          Length = 494

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 232/461 (50%), Gaps = 31/461 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           RE +++ ++ DSR ++ G  FVAI G    G  F+ QA A GA AI+           A 
Sbjct: 18  REVQVSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAILFEPPAP-----AD 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGL 142
           + ++   + V   R  +   A +L+G HP     ++ VTGT+GK+S+   + Q     G 
Sbjct: 73  LPASADAIAVPGLRARMGAMADQLHG-HPSQAMTMVGVTGTNGKTSIVQLLTQAWHVLGT 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  IG     +         TTP  + L   L+ L   G   V++E SSH LDQ R+D 
Sbjct: 132 CSGSIGTLGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSSHALDQGRVDA 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+   AY  AK RLF   +P    A++  DD + ++++  A 
Sbjct: 192 VHFDVAVFTNLTRDHLDYHRDMAAYGAAKARLFA--MPGLRAAVVNLDDTFGRQLLH-AL 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQV 312
           +   R + V  +G+     +  A+H      +   G  FD +          PL G F V
Sbjct: 249 DPALRRIGVSSRGRDGATVRAEALH------LDARGIGFDLVVGTQRHALQSPLLGRFNV 302

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L  AG   A+ +    +   L +L  + GR   +G       + VDYAHT ++LE  
Sbjct: 303 DNLLAVAGALYALDVPPVRIAATLAQLQPIRGRMNRLGGRDAQPLVVVDYAHTPDALEQA 362

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+++R    GR++ VFGCGG+RD GKRP M  IA  L+D   VTDDNPR ED E+I A+I
Sbjct: 363 LQSLRDHAKGRLLCVFGCGGERDAGKRPQMAAIAQRLSDYVFVTDDNPRGEDGERIVADI 422

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           + G  G      +  R +AI  AI M   +D++++AGKGHE
Sbjct: 423 LAGFDGMTTVQVQRERAQAIAAAIAMAGAEDIVLIAGKGHE 463


>gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 491

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     D + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFDVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DD  + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDVVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHETYQII 466


>gi|332764931|gb|EGJ95159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-671]
          Length = 472

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 244/478 (51%), Gaps = 29/478 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++   +V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R + GL
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGGL 470


>gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 482

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 245/470 (52%), Gaps = 31/470 (6%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV       
Sbjct: 4   FPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERP--- 60

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQIC 137
                 I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +  + +I 
Sbjct: 61  ------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIM 114

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +  G  +  IG  +  I     + + TTP  + L +  S +  QGV    +E SSH LD 
Sbjct: 115 RAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDL 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDA 251
            R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A++ +DD 
Sbjct: 175 GRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDN 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++E M+   +    V++ G      I  K +         T+    +  +    L G+F
Sbjct: 235 VTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKF 291

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSN 367
            VYN L A    +  G+    ++  +++L  VPGRFE V     GG+ Y   VDYAHT +
Sbjct: 292 NVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVV----DGGQNYTVIVDYAHTPD 347

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  
Sbjct: 348 SLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAA 407

Query: 428 IRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I  +++ G  G  +    +R EAI  AI  +   D++++AGKGHET  I+
Sbjct: 408 ILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 457


>gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 510

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 156/480 (32%), Positives = 244/480 (50%), Gaps = 28/480 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++  DSR  Q G +F+A+ G++  G     +A+A+GA A++   A  ++   A +   
Sbjct: 31  LRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEALARGAVAVLWEPAPGVE---APVDLG 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFV-QQICQRSGLSSF 145
            P + V    + L   A R +G HP     ++ VTGT GK+SV+ F+ Q + Q SG    
Sbjct: 88  VPCVAVPGLGQRLGEIADRFFG-HPSGAMKLIGVTGTDGKTSVSQFLAQTLYQESGRCGV 146

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                + +     +   TTP  + L + L+ L  +GV +  +E SSH L Q R++G  L 
Sbjct: 147 IGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVRYTVMEVSSHALVQGRINGAALD 206

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TNL RDH+DYH + +AY  AK RLF    P    AI+  DDA+ +++         
Sbjct: 207 IAVLTNLSRDHLDYHDSMEAYAEAKARLFR--WPGLETAILNLDDAFGRKLAAELAEREV 264

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL 316
           ++L  G       +++V      + V    +G  F  + P         L G F V+N L
Sbjct: 265 QILGYGLAAASGEIEQV----RGESVEYRPDGLAFSVVTPWGSGRLETGLLGAFNVHNLL 320

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                 + +G+     LE L  +  VPGR E   +  +G  + VDYAHT  +L  +L+ +
Sbjct: 321 AVLAALLQLGLSLTDALERLTHVRTVPGRMERF-SGGKGATLVVDYAHTPAALAQVLQAL 379

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    GR+  VFGCGG+RD GKRP+M + +   AD  ++T DNPR EDP+ I  E++ G 
Sbjct: 380 RMHCEGRLWCVFGCGGNRDPGKRPLMARASEQFADRVVLTSDNPRHEDPQDIAREVMTGF 439

Query: 437 --PGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             P  + ++ +R  A+  A       D+++VAGKGHETV IV + ++  S D D+ R ++
Sbjct: 440 ERPAEVHQELDRQAAVEWAWSHAAAGDLVLVAGKGHETVQIVGDEQRPFS-DRDLARRLV 498


>gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 488

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 240/484 (49%), Gaps = 40/484 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  G  +  +G       F Q  + + TT S + +  +LS     G    
Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           I ADD    + +    +A    ++V     F    KV +    + + I    K  D  F 
Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287

Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F V N L+     ++ G     +L   + L  V GR E +   ++
Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  I
Sbjct: 348 P-IVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+E   +I  +I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE 
Sbjct: 407 VTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466

Query: 472 VHIV 475
             I+
Sbjct: 467 YQII 470


>gi|329944588|ref|ZP_08292728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530141|gb|EGF57024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 528

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 240/463 (51%), Gaps = 38/463 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DS     G +FV + G    G  F  +A+  GA A++  +  +L   +  +   TP+
Sbjct: 50  VSVDSGDTAPGELFVGLPGFTAHGARFSDEAVGSGAVAVLTDADGAL--IAHEVAPGTPV 107

Query: 93  LVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQI-------CQRSGL 142
           LV D+ R  +   ++ +Y  HP   L   AVTGT+GK++ + F+  I       C  +G 
Sbjct: 108 LVHDDPRAVVGPLSAEVY-HHPARGLVTTAVTGTNGKTTTSYFLDAILSAHVGGCMVAGT 166

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              ++G  S  S      R T  +P+ L + ++      V   S+EASSH +  HRLDG+
Sbjct: 167 VELRVGERSVESP-----RTTVEAPV-LQRMMALAVEDRVGAASLEASSHAIVLHRLDGV 220

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +    FTNL RDH+D+H+T + Y  AK RLF     +    +I  DD +   +  +A  
Sbjct: 221 VVDVAGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARR--GVICVDDQWGAALAAQAPI 278

Query: 263 AGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNAL 316
              RV +  Y G      ++    V    +    T+   +G+  +   PLPG   V NA 
Sbjct: 279 EVDRVRA--YPGDVPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAA 336

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKN 375
           +A  + I  G+ +A     L   H +PGR + +   + R G   VD+AHT  ++++ LK 
Sbjct: 337 LALVMAIRAGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMDLALKA 396

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R IT GR+IVVFG  GDRDQGKRP++G++   LAD+ +VTD+NPRSEDP  IR  I+ G
Sbjct: 397 VRPITPGRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPRLIRNAILDG 456

Query: 436 I----PGF--IEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I    PG   +E+    R +A+R  +E+    D ++V GKGHE
Sbjct: 457 IRTVRPGLEDVEEVTTWRGDAVRRGVELCGPDDTVIVTGKGHE 499


>gi|294635004|ref|ZP_06713521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091603|gb|EFE24164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 495

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 167/492 (33%), Positives = 246/492 (50%), Gaps = 20/492 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ +  Q  ER + E++ DSR   AG +FVA+VG+  DG  FIPQAIAQG  AI+  +  
Sbjct: 10  LAPWVQQAPERALREMTLDSRVAAAGDLFVAVVGHSADGRRFIPQAIAQGVAAIIAEADG 69

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS------VAS 131
             +D     +   P++ +    + LS  A R YG+  +++  +  T           +A 
Sbjct: 70  VAEDGCVREQHGVPVVYLSRLNERLSALAGRFYGQPGDDVQLIGVTGTNGKTTTTQLLAQ 129

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q + +R  +    +G       +  +N  TT S + +   L  L+ +G T V++E SS
Sbjct: 130 WAQLLGERGAVMG-TVGNGLLGQVYPSEN--TTGSAVDVQHMLRNLADEGATLVAMEVSS 186

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL Q+R+  +  +A  FTNL RDH+DYH     Y  AK RLF      E   II ADD 
Sbjct: 187 HGLVQNRVLALPFVASVFTNLSRDHLDYHGDMAQYEQAKWRLFSTHHSGEK--IINADDE 244

Query: 252 YSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             +  + +  +A    L+      + G+++  ++V        + I            L 
Sbjct: 245 VGQRWLAKLPDAVAVTLADALPQAWPGRWLAARRVDYHDGGATIDIDSSWGCATLHSRLM 304

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF V N LVA    +A+G     +     +L  V GR E      +   + VDYAHT +
Sbjct: 305 GEFNVSNLLVALATLLALGYPLEALSAVSGQLQPVCGRMEVFQAAGKP-TVVVDYAHTPD 363

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L   R    G++  +FGCGGDRD GKRP+MG IA   AD  +VTDDNPRSE+P  
Sbjct: 364 ALEKALLAARLHCQGQLWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRT 423

Query: 428 IRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I+ G+  PG ++    R EA+  AI     QDV++VAGKGHE   +V N     S 
Sbjct: 424 IINDILSGMLDPGMVQAIPGRAEAVTAAIMQAAPQDVILVAGKGHEDYQLVGNRRLDYSD 483

Query: 485 DCDIIREILGLI 496
              + R +LG++
Sbjct: 484 RVTVAR-LLGVV 494


>gi|238760092|ref|ZP_04621242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
 gi|238701711|gb|EEP94278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 228/460 (49%), Gaps = 29/460 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +     D S       P++ +
Sbjct: 4   DSRVAAAGDVFVAVVGHQTDGRRYIPQAIAQGVAAVIADAEGVAPDASMVEMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            N  + LS  A + Y   P + L + G +G +   +  Q + Q S      +G TS +  
Sbjct: 64  RNLNQHLSTLAGQFY-HQPGDALRLVGVTGTNGKTTTTQLLAQWSQ----ALGDTSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A 
Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    
Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLSQLPQAVAVS 236

Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +      G++G ++    V    N   +              L G F V N LVA    +
Sbjct: 237 MEGNVPTGWKGPWLFASDVQYHDNGASIAFDSSWGAGQLESRLMGAFNVSNLLVALSTLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G+
Sbjct: 297 SLGYPLAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+   ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIIADILSGL---LDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +      R EA+ +AI    + DV+++AGKGHE   +V N
Sbjct: 413 HAQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 452


>gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
 gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
          Length = 487

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 163/486 (33%), Positives = 260/486 (53%), Gaps = 39/486 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++  V  DSR + A  +FVA  G + +GH+FI  AI +GA  +V       +D      
Sbjct: 22  KEVQGVYFDSRKVVAQSLFVATKGVQVNGHIFIETAIEKGATVVVC------EDLPGLTH 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +    +VV N+++ L + A+  +  HP    +++ VTGT+GK++V S +  +  ++G  S
Sbjct: 76  AEVTYVVVPNSQEALGVMAANWF-DHPSKKLSLIGVTGTNGKTTVTSLLYALFTKAGYPS 134

Query: 145 FQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              G  STI       A +   TTP    +   L  + S+G++H  +E SSHG+ Q R+ 
Sbjct: 135 ---GLISTIKILVGEKAYETAHTTPDVWTINAYLQEMVSEGLSHCFMEVSSHGIAQMRIK 191

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+      FTNL +DH+DYH+T   Y + K  LF+ L    + A++ +DD   K  +   
Sbjct: 192 GLTFEGAIFTNLSQDHLDYHKTFANYRDTKKLLFDGL-STTAFALVNSDD---KNGLFML 247

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            N   + +S G +G  +   K   + N+   Q + I  +    +    L G+F  YN L 
Sbjct: 248 QNTKAKKMSYGLKG--VADFKAQILENQFSGQLLKIDQQ----EVWTTLLGQFNAYNILA 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                  +G+++  VL+H+  L  V GRF++  + ++   I VDYAHT ++L+ IL+ I 
Sbjct: 302 IYATATLLGLNTLEVLQHISTLENVAGRFQYFISKNQITAI-VDYAHTPDALDNILETIG 360

Query: 378 TITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            I +   ++I V GCGGDRDQGKRP+MG IA + +D  I+T DNPRSE P  I  ++  G
Sbjct: 361 QIRTKNEKLITVVGCGGDRDQGKRPLMGAIAAEKSDTVILTSDNPRSETPIAILEQMEAG 420

Query: 436 I-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           + P  I+K     NR +AI+TA  M   +D++++AGKGHE    +  G K    D +I++
Sbjct: 421 VSPVDIKKVLVVENRKQAIKTACMMATPKDIILIAGKGHEKYQDI-KGVKTPFDDYEIVK 479

Query: 491 EILGLI 496
             L L+
Sbjct: 480 NHLDLL 485


>gi|300900884|ref|ZP_07119021.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
 gi|300355648|gb|EFJ71518.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
          Length = 471

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLSDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   + +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLSDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|317046892|ref|YP_004114540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
 gi|316948509|gb|ADU67984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
          Length = 495

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 164/482 (34%), Positives = 240/482 (49%), Gaps = 20/482 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + +++ DSR   AG +F+A+ G+  DG  FIPQAIAQG  A++  +     D      
Sbjct: 20  RPLRDMTLDSRSAAAGDLFIAVAGHHADGRRFIPQAIAQGVAAVIAEAEGEAIDGDIREI 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y + P   L + G +G +   +  Q I Q + L     
Sbjct: 80  HGVPVIYLAQLPQRLSALAGRFY-QQPAEKLKLIGVTGTNGKTTTTQLIAQWANLLGETG 138

Query: 148 GPTSTISS------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               T+ +       A +N  TT S + +   L  L  QG T  ++E SSHGL QHR+  
Sbjct: 139 AVMGTVGNGLYGQLVATEN--TTGSAVDVQHVLHDLVGQGATLAAMEVSSHGLVQHRVAA 196

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   A  FTNL RDH+DYH   Q+Y  AK  LF E   +   AII ADD   +  + +  
Sbjct: 197 LPFAAAVFTNLSRDHLDYHGDMQSYEAAKWLLFSE--HQVGAAIINADDEVGRRWLAKLP 254

Query: 262 NAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +A        L  G  G+++    V        +  S    D +F   L G F V N L+
Sbjct: 255 DAVAVTMADNLQPGCHGRWLKATAVNYHDGGAHICFSSSWGDGEFDSRLMGAFNVSNLLL 314

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +++      ++    +L  V GR E      +   + VDYAHT ++LE  L+  R
Sbjct: 315 ALATLLSLDYPLDALVSSATQLLPVTGRMEVFSAPDKP-TVVVDYAHTPDALEKALEAAR 373

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSEDP+ I  +I+ G+ 
Sbjct: 374 LHCKGQLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPQAIVNDILTGLL 433

Query: 437 -PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            PG       R +A+  AI     +D+++VAGKGHE   IV N     S D D +  +LG
Sbjct: 434 DPGRARVVAGRAQAVTNAIMQAKAEDIVLVAGKGHEDYQIVGNRRLDYS-DRDTVARLLG 492

Query: 495 LI 496
           ++
Sbjct: 493 VM 494


>gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
 gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
          Length = 503

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 176/473 (37%), Positives = 247/473 (52%), Gaps = 37/473 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I  ++ DSR ++ G++FVAI G + DGH FI +A+A+GA A+V   A +++      
Sbjct: 21  DRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIQEAVARGAAAVVGERAPAVE------ 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
               P + V ++R  L L AS  YG HP   L + G +G +   +    V+ + + +G  
Sbjct: 75  --GVPYVQVPSSRTALGLLASAFYG-HPSARLVLVGVTGTNGKTTTTHLVRWVLEAAGHP 131

Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG   + I   +     TTP    L K L+ +   G+THV +E SSH L   R+ G 
Sbjct: 132 TGLIGTVHNIIGGRSLPVERTTPEAADLQKLLAAMRDAGLTHVVMEVSSHALTLQRVAGC 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---------AIIYADDAYS 253
               G FTNL +DH+D+H + + Y  AK RLF  L   E P         A+I ADD + 
Sbjct: 192 AFDVGVFTNLTQDHLDFHASMEDYAAAKARLFARLGRNEIPGTVKPGPKAAVINADDPWG 251

Query: 254 KEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +  R+      V++ G  Q   +  + V       +  +     +      L G F V
Sbjct: 252 TFMADRSS---APVITYGIRQAADVTARDVVVEPGGVRFVLGTRDGEVPVRLRLTGRFNV 308

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLE 370
           YNAL AAG  +A+GID A V   LE L  VPGR E +    RG    + VDYAHT + LE
Sbjct: 309 YNALAAAGAGLALGIDPATVARGLESLPAVPGRLERI---DRGQPFTVLVDYAHTPDGLE 365

Query: 371 MILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +L  +R +   GR++ VFGCGGDRD+GKRP MG IA  LAD  ++T DNPRSEDPE I 
Sbjct: 366 NVLSTVREMAGQGRVLCVFGCGGDRDRGKRPQMGAIAARLADYTVLTSDNPRSEDPEAII 425

Query: 430 AEIIHG---IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +I  G   +PG  +     R  AIR  +E+    DV+V+AGKGHE   I  +
Sbjct: 426 DDIEAGVRQVPGAAYERVTERAAAIRRVLELARPGDVVVIAGKGHEDYQIFAD 478


>gi|284008375|emb|CBA74779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arsenophonus nasoniae]
          Length = 475

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 161/475 (33%), Positives = 245/475 (51%), Gaps = 39/475 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E++ DSR + AG +F+A+ G+++DG  +I QAIAQG  AI+  +    +  +      
Sbjct: 2   LREMTLDSRKVAAGDLFLAVKGHQKDGRQYISQAIAQGVAAIIAEAKGETEAGTIRYMHG 61

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +++    LSL A   Y +HP   L + G +G +   +  Q I Q +      +G 
Sbjct: 62  VPVIYINDLNNQLSLLAGEFY-QHPAAKLRLIGVTGTNGKTTTTQLIAQWAK----GLGE 116

Query: 150 TSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S +     +  L        TT S + +   L  L  +  T V++E SSHGL Q R+  
Sbjct: 117 VSAVMGTVGNGILGQIVLSENTTSSAVDVQAELQLLLDKQATLVAMEVSSHGLVQSRVAA 176

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I   A  FTNL RDH+DYH   Q Y  AK  LF     K    II  DD    + +++  
Sbjct: 177 IPFTAAVFTNLSRDHLDYHGDMQNYAAAKWLLFST--HKSDKQIINVDDETGLQWLEKLP 234

Query: 262 NAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVY 313
            A C V     +   +QG ++ +++V   ++ +  TI   S  GK      PL G F V 
Sbjct: 235 QA-CAVSMENRIPTDWQGAWMLVEQVD--YHDRGATIHFNSTWGKG-SLKSPLMGAFNVN 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N ++A    + +G     V++    +  V GR E   +  R   + VDYAHT ++LE  L
Sbjct: 291 NVMLAMATLLMMGYPFEAVIKSSHAIQPVCGRMEVFTSPGRP-TVVVDYAHTPDALEKAL 349

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R    GR+  VFGCGGDRD+GKR +MG +A   ADI +VTDDNPRSE+P+ I  +I 
Sbjct: 350 SALRLHCRGRLWCVFGCGGDRDKGKRALMGSVAEQYADIVVVTDDNPRSEEPKAIINDI- 408

Query: 434 HGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             + GF++ G       R+EA+ +AI   N  DV+++AGKGHE   I+  G++++
Sbjct: 409 --LSGFLDAGRAMPIVGRVEAVTSAIMQANADDVILIAGKGHEDYQII--GDRRL 459


>gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter heparinus DSM 2366]
 gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM
           2366]
          Length = 485

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 158/509 (31%), Positives = 261/509 (51%), Gaps = 38/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQD++Y     + +Q+ +       RK++ +  DSR +     F AI G   DGH +I
Sbjct: 1   MQLQDILYG--VTITDQIGV-----TNRKVSALVFDSRQVIKDAAFFAIKGTLADGHTYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
              ++ GA  ++       +   A I  +   + V N+   L   A+  YG   E   + 
Sbjct: 54  AATVSAGAGVVIC------EVLPAEIAPDVTYIQVANSAVALGRMAANFYGNPSEKLQLT 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174
            +TGT+GK+++A+ + ++ +  G   +++G  ST+ +   D  +    TTP P+ L   L
Sbjct: 108 GITGTNGKTTIATLLFKLFRALG---YKVGLISTVENHINDEVIPATHTTPDPLALNALL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +   G  +  +E SSH + QHR++G+    G F+N+  DH+D+H+T   Y  AK   F
Sbjct: 165 QDMVDAGCDYCFMEVSSHAVVQHRIEGLSFAGGVFSNITHDHLDFHKTFDQYIKAKKAFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L P  + A+   DD  +  VM +   A  +  ++     F    K   I N  +  + 
Sbjct: 225 DAL-PASAFALTNLDDK-NGMVMLQNTRAAKKTYALKQLADF----KAKVIENSFK-GLH 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  D D  F L G F  YN L   G  + +G +   VL  L  L    GRF+++ T+S+
Sbjct: 278 LDIDDADVFFKLVGSFNAYNLLAVYGTAVLLGQEKLDVLTLLSNLTGAEGRFDYI-TSSQ 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                VDYAHT ++++ +L  I+ I  G  ++I + GCGGDRD+ KRPIM ++A D +D 
Sbjct: 337 HIIGIVDYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPIMAQVACDWSDK 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR+E+P+ I  E+  G+    ++      +R EAI+TA  +    D++++AGK
Sbjct: 397 VILTSDNPRTENPQTIVEEMEKGVSPTNKRKTLSIVDRKEAIKTACHLARPGDIILLAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GHE    + NG +    D +I+ E L LI
Sbjct: 457 GHEKYQEI-NGVRYHFDDKEILTEQLNLI 484


>gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 491

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEEPGAILDDMVHGANGKNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466


>gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
 gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
          Length = 454

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 242/477 (50%), Gaps = 45/477 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRSNTP 91
           + +DSR ++ G  F+AI     DGH +I QAIA GA  I+     YS++           
Sbjct: 5   LKTDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGATKIIAEHGNYSVE----------- 53

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            ++V+NTRK+L+ +  + Y    ++I  + VTGT+GK++    + Q+          +G 
Sbjct: 54  TVIVENTRKYLNEYLYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGT 113

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 +  ++   TTP    L   L    + GV +  +E SSH L + R+ G++    +
Sbjct: 114 VGFYYGNIKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEVSSHALAKQRIYGLEFDEVA 173

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T + Y NAK +LFE+       AII  DD + +  M   +N      
Sbjct: 174 FTNLTQDHLDYHKTLENYANAKRKLFEKT-RNNKIAIINGDDIHHQHFMLEGNNN----- 227

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAA 319
                   I + +   I N   V  S  G +FDF +          + G + +YN L A 
Sbjct: 228 --------IVIDRDVKIEN---VDFSHLGTEFDFRYLDNSYHVRLNMVGRYNIYNYLTAL 276

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L   +G     +L   EKL    GR E +  N+    I+VDYAHT +++E +LK+ +  
Sbjct: 277 LLVNKLGFKIEDILLLNEKLKAPAGRMELIKYNTNS--IFVDYAHTPDAVENVLKSAQEF 334

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
             G+II + GCGG+RD  KRPIMGKIA+D +D  I T DNPR E+PE I  +I   +   
Sbjct: 335 KKGKIITIIGCGGNRDATKRPIMGKIAVDNSDYVIFTSDNPRKEEPEAILNDITANLISD 394

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            F     R +AI   ++ML++ D+L++ GKGHE      +G++  S   ++++ I G
Sbjct: 395 NFEIIVERQDAIYKGVKMLDENDILMILGKGHENYQETKDGKRHFSDQEEVLKCIDG 451


>gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
 gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
          Length = 495

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 163/466 (34%), Positives = 250/466 (53%), Gaps = 21/466 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR++Q G +FVA+ G   DG  ++ QA A GA A +V      +D         P +V+
Sbjct: 38  DSRNVQPGELFVALRGGSHDGRAYLSQAAAAGAVAALV------EDELPGEEPPLPCVVI 91

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
              R  L   A R Y + P    ++ AVTGT+GK++V+    Q+ + +G     IG   +
Sbjct: 92  PGLRHKLCEIAGRYY-RDPSRQMHVAAVTGTNGKTTVSQLFAQLLRSAGYDCGVIGTLGA 150

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           ++++  QD+  TTP  I + + L+  + Q V  VS+E SSH LDQ R++G+ + +  FTN
Sbjct: 151 SLTAGVQDSVHTTPDSIAMQEILASWAGQAVPFVSMEVSSHALDQGRVNGLDIDSAIFTN 210

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH   ++Y  AK RLF         AI+ +DD +S +V+    + G  VL  G
Sbjct: 211 LTRDHLDYHGDMESYGAAKARLFA--FESLRTAILNSDDPFS-DVLAGRMSLGVAVLRYG 267

Query: 272 YQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                  + L  +       Q+ +     +     PL G+F   N L A    +  G+  
Sbjct: 268 LNDASADVRLSNLRLHSAGMQMRLESPWGNGTLNCPLLGKFNAVNLLAALTAALQAGVPF 327

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V+   E L  VPGR E +  ++ G  + VDYAHT ++L  +L  +R    GR+I VFG
Sbjct: 328 DAVMTAAESLQPVPGRMEPI-HSAAGPLVVVDYAHTPDALRHVLIALREQCKGRLIAVFG 386

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEA 448
           CGGDRD+GKRP+M +    +AD A++T DNPRSEDP  I A+I   + G +    +R +A
Sbjct: 387 CGGDRDKGKRPLMAEAVAAIADRAVITSDNPRSEDPLAIIADIEAAMAGEYHVCADRGDA 446

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREIL 493
           I  AIE    +D +++AGKGHE   I+  G+++ +  D  + +++L
Sbjct: 447 IAMAIESAAPEDCVLIAGKGHEDYQII--GDQRFTFSDSAVAQQVL 490


>gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
 gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
          Length = 491

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466


>gi|309796075|ref|ZP_07690487.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
 gi|308120317|gb|EFO57579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
          Length = 471

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|300821910|ref|ZP_07102054.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|300525510|gb|EFK46579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|324017754|gb|EGB86973.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 117-3]
          Length = 471

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
 gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
          Length = 491

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAILADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  S +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTPEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    V++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+P  I  +++ G  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466


>gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
 gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
          Length = 500

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 151/482 (31%), Positives = 258/482 (53%), Gaps = 30/482 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++  +S +++   IF+A  G++ DGH FI  A  +GA  I+       QD    I +N
Sbjct: 28  IADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKGASLIIA------QD-EEKIPTN 80

Query: 90  TPI--LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +  ++V++ +K  +  + +L+   P++  IL VTGT+GKS+  S V  I Q+S   S 
Sbjct: 81  DSLQYIIVEDIKKAAADLSHKLFDISPDDFKILGVTGTNGKSTTVSLVHHILQKSDKDST 140

Query: 146 QIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            I   ST+    +D  +     TTPS + L+K L       +  +++E SSH + Q R++
Sbjct: 141 LI---STVEIKIKDEVVKEPYNTTPSILELSKILKNSKENNIEFINMEVSSHAIHQRRIE 197

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+K    SFTN+ RDH+DYH+  + Y + K+ L    L  E   +I  D     + +K  
Sbjct: 198 GVKFDIISFTNITRDHLDYHKDFEEYKSIKLSLMN-YLKDEGKIVINLDRLNKDDFVK-- 254

Query: 261 HNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             +G  V++ G++    F+       +   +    + E K ++    L G+F VYN   A
Sbjct: 255 --SGKEVITYGFKKNADFVIENYEQTLQQMKFTIKTKEHKSYEIRSHLIGKFNVYNITNA 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             +    G++   ++  +     V GRF+ V G+ S G    +D+AHT ++L  +LK   
Sbjct: 313 FVIATLFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFFAVIDFAHTPDALNEVLKTAS 372

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +IT GRII VFG GG+ D+GKR +MG++  + +D+ ++T+D+P+ EDP++I  ++  GI 
Sbjct: 373 SITEGRIITVFGAGGNADKGKRKLMGQVVSEHSDVIVLTNDDPKDEDPDQIIEDVSKGID 432

Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               FI   +R  AI TA+   NK D++++AG+GHE   +  NG+K    D ++ ++++ 
Sbjct: 433 QDKHFIVIPDRETAIDTALRFANKGDIVIIAGRGHEKYQLFANGKKVKFNDYEVTKKLID 492

Query: 495 LI 496
            I
Sbjct: 493 KI 494


>gi|148651952|ref|YP_001279045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Psychrobacter sp.
           PRwf-1]
 gi|148571036|gb|ABQ93095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. PRwf-1]
          Length = 569

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 136/386 (35%), Positives = 210/386 (54%), Gaps = 33/386 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSP 167
            ++AVTGT+GK++++  + Q+CQ S ++  Q    S +   A + RL        TT   
Sbjct: 155 QVIAVTGTNGKTTISQLMAQLCQFSEVAQLQ---NSAVMGTAGNGRLDSLVQASHTTGDA 211

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + +   L  +  +GV  +++EASSHGLDQ RL G+ +    +TNL RDH+DYH   Q Y 
Sbjct: 212 LAVQGFLRKMGDEGVDLLALEASSHGLDQQRLQGVPVTVALYTNLSRDHLDYHPDMQDYA 271

Query: 228 NAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CA 284
            AK RLF++   P+ + A+I ADD ++  +++ A N+G  V     QG FI    +   A
Sbjct: 272 QAKARLFDKAYFPQLTHAVINADDEFAPLMIETAQNSGVSVWLYSLQGDFIEKSDLQRNA 331

Query: 285 IHNKQQVTISVEGKDFD---------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
               + +  S++G   +            PL G F V N L A    IA+GI+   +   
Sbjct: 332 YFIAKTIEPSLDGVKIEAATSFGPLTLHSPLLGRFNVANLLAAVAGAIALGIEPESIPAL 391

Query: 336 LEKLHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           +++LH   GR + V  + +G     G   VDYAHT ++L  +L ++++  SG +  +FGC
Sbjct: 392 VKQLHGASGRMQRVSLDEQGSQPEQGVFIVDYAHTPDALTQVLTSLKSHCSGNLWAIFGC 451

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNR 445
           GGDRD+GKRP+M +  L  AD  ++T DNPRSEDP+ I  ++  G+            +R
Sbjct: 452 GGDRDKGKRPLMAQAGLATADKVVLTSDNPRSEDPQMILQDMQQGMSDEQHAKTTVIADR 511

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHET 471
            +AI  A+E     D++V+AGKGHET
Sbjct: 512 KQAIEYAVEHAAADDIVVIAGKGHET 537


>gi|322384125|ref|ZP_08057843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151205|gb|EFX44514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 495

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 247/478 (51%), Gaps = 53/478 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ V  DSR I+ G +F+ I G   DGH F  +A+  GA A+VV     +         
Sbjct: 22  EVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAVALVVERRLDV--------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N P ++V  TR  ++LFA+  YG   H   I+ VTGT+GK++    ++QI +  G  +  
Sbjct: 73  NVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTTTYLIEQILRDQGFITGL 132

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     I S       TT   + + K L+ +  +   +  +E SSH LD  R+ GI   
Sbjct: 133 MGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVMEVSSHALDFGRVKGIPFR 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMK 258
           +G FTNL +DH+DYH+T   Y  AK +LF  +         + S AI+  DD  S E  +
Sbjct: 193 SGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEKQRSYAILNVDDEAS-ETFQ 251

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGE 309
           R  +A   V++ G       ++K C +     + I+ EG +F         +    L G+
Sbjct: 252 RLTSA--EVITYG-------IEKECDVR-ASNIRITAEGTEFTLTTFEGTENIRMKLVGK 301

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F VYNAL A    +A GI    + + L ++  VPGR E V +  +   + VDYAHT + L
Sbjct: 302 FNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEVV-SEGQDYLVLVDYAHTPDGL 360

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  ++    G +  VFGCGGDRD+ KRP+MGK+    +D   VT DNPR+EDP  I 
Sbjct: 361 ENALSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKYSDHLFVTSDNPRTEDPAAIL 420

Query: 430 AEIIHGIPGFIEKG---NRIE-------AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +I   +PG +E G   +R E       AI+ AIE+ + +DV+++AGKGHET   + N
Sbjct: 421 EDI---VPGIVEAGLSEDRFELIVDRRLAIQKAIEVASPKDVVLIAGKGHETYQDIMN 475


>gi|261823021|ref|YP_003261127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607034|gb|ACX89520.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium wasabiae
           WPP163]
          Length = 495

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 167/488 (34%), Positives = 247/488 (50%), Gaps = 30/488 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  + E++ DSR   AG +FVAIVG+K DG  +IPQAIAQG  AIV  +     D +   
Sbjct: 19  ELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGVAAIVAEAEGETADGTVRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A R Y + P   L + G +G +   +  Q + Q S      
Sbjct: 79  MHGVPVIYLSNLNQRLSALAGRFY-QQPAEKLQLIGVTGTNGKTTTTQLLAQWSQ----A 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + + + LS L  QG T  ++E SSHGL Q+R
Sbjct: 134 LGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFAAMEVSSHGLVQNR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH   ++Y  AK  LF E   +    II ADD      + 
Sbjct: 194 VAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWALFAE--HRVGQMIINADDEVGLRWLA 251

Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A    ++     G +G+++   ++    N   +         +    L G F V N
Sbjct: 252 KLPDAVAVTMANNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIESRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A    +++G     ++    +L  V GR E      +   + VDYAHT ++LE  L+
Sbjct: 312 MLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGKP-TVVVDYAHTPDALEKALE 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I  +I+ 
Sbjct: 371 AARLHCLGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVTDILS 430

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           G+   ++ G       R EA+ +AI    + DV+++AGKGHE   +V N     S    +
Sbjct: 431 GL---LDAGRVQVIHGRAEAVTSAIMQAQENDVVLIAGKGHEDYQLVGNQRLDYSDRITV 487

Query: 489 IREILGLI 496
            R +LG+I
Sbjct: 488 AR-LLGVI 494


>gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
 gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
          Length = 509

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 160/474 (33%), Positives = 238/474 (50%), Gaps = 16/474 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S DSR I  G +F A+ G+  DG  FI  AI++GA A+V  ++    DFS ++ +
Sbjct: 32  EITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISRGATAVVADASDDF-DFS-SVPN 89

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + P+++V N  + LSL A   Y  HP     ++ VTGT+GK++    + Q+  + G  + 
Sbjct: 90  DIPLVLVKNLGRTLSLIAGNFY-DHPSRSVRVIGVTGTNGKTTCVQLLMQLFNQLGEKAA 148

Query: 146 QIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            IG        S  QD  LTTP  I   + L+ L + G T V++E SSH L+Q R+D + 
Sbjct: 149 SIGTMGYGFSQSALQDFGLTTPDAIACQRVLAQLRNAGATFVAMEVSSHALEQGRVDAVN 208

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTN+ RDH+DYH T + Y  AK RLF         A+I  DD+ S+ +   +   
Sbjct: 209 FEGAVFTNISRDHLDYHGTFEHYIAAKSRLF--TFDALRFAVINGDDSASRALSAASTAE 266

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L     G  +  K +          IS    + +    L G F + N L       
Sbjct: 267 S-SFLYGAESGNTVVAKDIALSPEGVAAKISSAWGEANIQSCLIGNFNILNLLAVITTAC 325

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G     V E ++ L    GR + +  +     + VDYAHT ++LE  L  +R   +  
Sbjct: 326 AAGYSLPAVAEQVQHLQPARGRMQRIVVDGGDVTVCVDYAHTPDALEKALLALRAQAAND 385

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK- 442
           + VVFGCGGDRD+GKR  MG+IA + AD  +VT DNPR+E P  I  +++ GIP   ++ 
Sbjct: 386 VWVVFGCGGDRDKGKRAQMGRIAAEHADAVVVTSDNPRTETPACIIDDVLSGIPASDKRV 445

Query: 443 ---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +R  AI  AI      D +++AGKGHE   IV   ++    DC++  + L
Sbjct: 446 TNFEDRSAAIEFAILQAKSGDTVLIAGKGHEDYQIVGTAKRHFD-DCEVSSQCL 498


>gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
          Length = 495

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 175/493 (35%), Positives = 253/493 (51%), Gaps = 57/493 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +++DSR +Q G +F  + G K DGH F   A + GA A+VV     +         
Sbjct: 22  QITGLNNDSRSVQPGTLFFCLPGYKVDGHDFAAAAASNGAAALVVERKLDVA-------- 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P L+V ++R  +++ + R Y  HP     ++ VTGT+GK++    +++I   +G S+ 
Sbjct: 74  -IPQLIVKDSRLAMAIISDRYY-DHPSQKLRLIGVTGTNGKTTTTYLIERILSDAGQSAG 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG   TI +    N L    TTP  + L + L+ ++  GV   ++E SSH LDQ R  G
Sbjct: 132 VIG---TIETRYAGNTLPMSGTTPGALELQQYLAAMAEAGVDSCAMEVSSHALDQGRTWG 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSK 254
            +   G FTNL +DH+DYH T + Y  AK  LF  L         + S A++ ADD+ S 
Sbjct: 189 CRFRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAEAERSYAVLNADDSASD 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFP 305
                A+ A   +L+ G   +        A      + I+  G  F         D    
Sbjct: 249 LF---ANAAAVEILTYGIDRE--------ADVRASDIRITSRGTTFRLETFRGGADISIR 297

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+F VYNAL A  + +  GI    + + LE L  VPGR E V        I VDYAHT
Sbjct: 298 MVGKFNVYNALAATSVALLEGISIEAIKQSLEALPGVPGRVESVDAGQPYAVI-VDYAHT 356

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE +L+ ++    GRII VFGCGGDRD+ KRPIMG+IA   ADI ++T DNPRSE+P
Sbjct: 357 PDGLENVLRTVKEFVEGRIICVFGCGGDRDRTKRPIMGRIAAKYADICVITSDNPRSENP 416

Query: 426 EKIRAEI-----IHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             I  ++       GIP   ++   +R  AI  A+EM +  DV+++AGKGHET  I+  G
Sbjct: 417 HAILLDVEEGLKADGIPSNRYLLIEDRRHAIEKAVEMASPGDVVLIAGKGHETYQII--G 474

Query: 479 EKKMSVDCDIIRE 491
            K    D  ++ E
Sbjct: 475 PKTFDFDDRLVAE 487


>gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
 gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
          Length = 508

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 247/489 (50%), Gaps = 52/489 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           E++SDSR I  G +FVA  G++ DG  +I  AI +GA+A++  +A    D    +     
Sbjct: 24  ELASDSRRIAQGDVFVAYPGDEADGRSYIANAIERGAQAVIYEAAGCTWDAEWDVAH--- 80

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            L +D+ ++     A+  Y  HP+     +A+TGT+GK+S A ++     R G  +  IG
Sbjct: 81  -LAIDDLKEHAGEIAAAYY-AHPDRSMFTVAITGTNGKTSCAQWLGSALSRLGQPTAVIG 138

Query: 149 PTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            T  +  F             TTP  + L ++L  +S+ G T +++EASS GL Q RL G
Sbjct: 139 -TLGVGIFTNGGHGSFDVTGYTTPDAVLLQRSLVNVSNLGATALAIEASSIGLHQGRLSG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTN  RDH+DYH    AY  AK  LF+   P    A+I  DDA    +++R  
Sbjct: 198 MHFDMALFTNFTRDHLDYHGDMAAYEEAKAMLFD--WPGLQHAVINLDDAMGVRLVQRLQ 255

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTISVEGK--DFDFLFPLPGEF 310
           +   R   VG  G  +  KK+  I          N+      +E    +      L G+F
Sbjct: 256 S---RQADVGITGYTLSDKKIDGIAVLRATDIRSNQSGTVFQLESSAGNTQVKTQLVGQF 312

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSN 367
            V N L   G+ +A GI     +  +E L  VPGR + +G    GG    + +DYAHT +
Sbjct: 313 NVSNVLGIIGILLAKGIALQDAVNAVEALTAVPGRMQQLG----GGEAPLVVIDYAHTPD 368

Query: 368 SLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R++ +   G +  VFGCGGDRD GKRP MGK+++  AD  +VT DNPR+E+
Sbjct: 369 ALEKTLATLRSVANDRGGELWCVFGCGGDRDPGKRPQMGKVSM-AADHIVVTTDNPRNEE 427

Query: 425 PEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           P  I  +I+ GI      P  IE  +R  AI  A     +QDV+++AGKGHE    V  G
Sbjct: 428 PANIIGDIVAGITAPKNAPQIIE--DRASAILWAGRHAARQDVILLAGKGHEAYQEV-KG 484

Query: 479 EKKMSVDCD 487
            K   +D D
Sbjct: 485 RKLPFLDAD 493


>gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
 gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
          Length = 491

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEEPGAILDDMVHGAIGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466


>gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
 gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
          Length = 491

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 243/475 (51%), Gaps = 28/475 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V +DSR +  G IFVAI G   DGH FI +A A GA+ IV      L D+   +   T 
Sbjct: 26  QVRNDSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQVIV--HERELTDY---LEKPTY 80

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           I V D++R +  L   R +   P+    ++ VTGT+GK++ A  V+ I + +G       
Sbjct: 81  IRVTDSSRAYARLV--REFCDCPDEYVKLIGVTGTNGKTTTAFLVEHIFRNAG------E 132

Query: 149 PTSTISSFA-QDNRLTTPSPIYLAKA------LSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           P   IS+   +D ++T P+     +A      L+ +   G+   ++E SSH L Q R++G
Sbjct: 133 PCGLISTVEYRDGKITAPATHTTPEAGILFPLLATMRRNGMRAAAMELSSHALQQGRING 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +     FTNL  DH+DYH   + Y+ AK   F  LL  +  A+I  DD + K + +   
Sbjct: 193 ARFRTAIFTNLTGDHLDYHGDMEHYYQAKKLFFTRLLGLDGTAVINIDDEFGKRLARDIS 252

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                   +     ++ +  V       +  ++ E + FD    L G   ++N   A   
Sbjct: 253 GRQQVTFGMTPAADWV-ISDVELGAEGSKFRLTGEEQAFDVATNLIGTHNIHNLTGAILA 311

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  G+    +   L +   VPGR E    +  G   YVDYAHT ++L+ +L+ +R IT 
Sbjct: 312 ALDYGLKPEAISHALNRPIRVPGRLEPFRASPEGPVFYVDYAHTDDALKNVLEILRKITK 371

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           G++I VFG GGDRD+ KRP MGK A   AD  I+T DNPRSE+P+KI  EI  GIP    
Sbjct: 372 GKLIAVFGAGGDRDRSKRPRMGKAAAQYADHLILTSDNPRSEEPQKIIDEIAAGIPAGTS 431

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           F  + +R +A+R A+ +    DV+++AGKGHE    +  G ++   D  +I+ ++
Sbjct: 432 FETEPDRAQALRRAVAVARPGDVVLIAGKGHENYQEI-QGVRRSLDDRKLIKTLI 485


>gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
 gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
          Length = 472

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 252/486 (51%), Gaps = 58/486 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           DF E++ +L+          I   SSDSR I+ G+ F  + G ++DG  +I +A+A+GA 
Sbjct: 6   DFLEMLEELNPRLSGVLPELIYGFSSDSRKIKEGFAFSVLKGTQQDGKAYITEALAKGAR 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
            ++       ++F   +    P + +D+ RK  +L A   +    EN  I+AVTGT+GKS
Sbjct: 66  LLLC------EEF---LDVAIPQICIDDIRKANALLADLFHAHVSENLKIIAVTGTNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S A  +Q +    G S+  IG     +    + + LTTP    L    + ++  G  +V 
Sbjct: 117 STAYIIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEVAKGGAEYVV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASSHGLDQ RL G+   A  FTNL  DH+ YH + + YF+AK  LF++   K    I+
Sbjct: 177 LEASSHGLDQQRLYGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDDYDSK--IKIV 234

Query: 247 YADDAYSK-------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +DDAY K       +V  +  ++ C+VL                     Q ++ +EG  
Sbjct: 235 NSDDAYGKRLRDSQTKVFSQDPDSDCQVL---------------------QNSVKLEGT- 272

Query: 300 FDFLFP-LPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGG 356
            + L P L GE+ +YNA  A  L   I   S +  +   +EK   +PGR E    N+ G 
Sbjct: 273 -ECLLPQLLGEYNIYNAAGAMLLVKEILGPSYVGKIKLAMEKFSGIPGRMELFKKNN-GA 330

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           ++ VD+AH   +LE ++  +R     ++ +VFGCGGDRD  +R  MG+ A DLAD  I+T
Sbjct: 331 QVIVDFAHAQEALEKVICELRKNCREKLSIVFGCGGDRDPARRYGMGE-ASDLADEVILT 389

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKGHET 471
           +DNPRSEDP+    +II+ I    +K  R+     +AIR A E L   D L++AGKGHE 
Sbjct: 390 NDNPRSEDPQ----QIINDILSSKKKEARVIFDREQAIRLAWEELEPNDCLLIAGKGHEE 445

Query: 472 VHIVTN 477
             I  +
Sbjct: 446 KQIFKD 451


>gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
 gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
          Length = 491

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
              +         I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERS---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DD  + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDVVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHETYQII 466


>gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 492

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 247/462 (53%), Gaps = 33/462 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + I+ ++ +S+ ++   +F A+ G K DGH FI +AI +GA+A+V  + +    F  +  
Sbjct: 19  KNIDYITYNSKDVKEASLFFAVSGQKADGHFFIEEAIKKGAKAVVYETGH----FMPSEY 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           ++   + V+++R  LS  +S+ YG   E   I+ +TGT+GK++ +  +++I +R    + 
Sbjct: 75  ADVTWIGVNDSRDALSWISSKFYGNPSERLKIIGITGTNGKTTTSYLIREILKRYDKKTG 134

Query: 146 QIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG    +    +   + TTP      + L  +  +GV +V  E SSH L   R+D  K 
Sbjct: 135 VIGTIKYLIDNEEKVAVHTTPEAPEFQELLHEMLVKGVEYVITEVSSHALALKRVDYTKF 194

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKE 255
               FTNL RDH+D+H+  + YFNAK RLF ELL  E  A+I  DD Y         +K+
Sbjct: 195 DIAVFTNLSRDHLDFHKDMEDYFNAKKRLFTELLKNEGVAVINFDDVYGRRLAEQLNTKK 254

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +     N    +    Y+  F   +    I  ++++ +         L  +P    +YN 
Sbjct: 255 ITYSIENPQADIYVKNYRLNFKETEINLHIKKEKELVVKTH------LLGIP---NIYNV 305

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A  + +A+ I   ++   +   H   GRFE V    +   ++VDYAH+ ++LE +L +
Sbjct: 306 ISAVSVAVALNIPFDIIESAISDAHSPDGRFERVD-EGQDFLVFVDYAHSPDALERLLIS 364

Query: 376 IRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +R +      +G+I+ VFGCGG+RD+GKRP MGKIA +L+D  I+T DNPR E+P +I  
Sbjct: 365 VRKLKEEISKNGKIVTVFGCGGNRDRGKRPQMGKIATELSDYVILTSDNPRWEEPREIIK 424

Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           EI  GI    +I   +R  ++    ++  K D+L+VAGKGHE
Sbjct: 425 EIEEGILKDNYIVVPDRTMSLYIGTKICKKGDILIVAGKGHE 466


>gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
 gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
          Length = 479

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 248/505 (49%), Gaps = 59/505 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+ KD          +   + +  I +VS DSR +    +F  I G + DGH F 
Sbjct: 1   MKLSELL-KDIE--------YTGTYVDCDITDVSCDSRKLTPNSVFACIKGVQSDGHDFA 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+A+G   I+      L         N  +LV D    F  + A+  YG   + +  +
Sbjct: 52  QAALAKGVPCILCERDLGL---------NNQLLVQDTHFAFAKMCAN-FYGNPAKKLKLV 101

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174
            VTGT+GK++V S ++++   +GL   ++G   TI +   D  +    TTP      K L
Sbjct: 102 GVTGTNGKTTVTSIIKRV--LAGLGC-KVGLIGTIQNEIGDQVIPTTKTTPDAGEFQKIL 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S +   G  +V +E SSH LDQ RL        +FTNL +DH+DYH+  + YF AK +LF
Sbjct: 159 SDMVEAGCEYVIIEVSSHALDQCRLADSHFEVAAFTNLTQDHLDYHKDMEDYFQAKAKLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     +I  DD+Y + +   AH   C + +   +         C   N   + + 
Sbjct: 219 HMC----DKGVICIDDSYGRRLALEAH---CSLRTFSAEDA----SASCFARN---IEMD 264

Query: 295 VEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           + G  F+ +         F  PG F V NAL AA +C+ +GI    V+  +     + GR
Sbjct: 265 ITGVRFEMVTGAVISRMQFGTPGLFSVRNALCAALVCLDLGISLDSVVGGINACGHIKGR 324

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGK 404
            E + T  R   +  DYAHT + L  IL +I      GR + VFGCGGDRD+ KRPIMG+
Sbjct: 325 SEIIPTG-RDFTVLCDYAHTPDGLVNILSSINEYKGKGRAVAVFGCGGDRDRKKRPIMGE 383

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQD 460
           +    AD+ IVT DNPR+EDP+ I  EI+ GI      F+   NR EAI  A++     D
Sbjct: 384 VVARNADLLIVTSDNPRTEDPDAIIDEIVAGIEPTGTPFLRITNRREAIHYAVQHAQPGD 443

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVD 485
           ++++AGKGHE   ++  G +K+  D
Sbjct: 444 IILLAGKGHEDYQVL--GTQKVHFD 466


>gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 483

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 153/474 (32%), Positives = 247/474 (52%), Gaps = 45/474 (9%)

Query: 19  SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           +I P+Q     E +I  V+ DSR +QAG +F+A+ G + DGH++IP AI +GA A++   
Sbjct: 9   AIQPIQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYIPVAIEKGAVAVLC-- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
               +D     +     + V ++   +   A+  Y        ++ VTGT+GK+++A+ +
Sbjct: 67  ----EDVPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELVGVTGTNGKTTIATLL 122

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189
               +  G   +++G  ST+ ++  D  +    TTP PI L   L  ++  G  +V +E 
Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQMADSGCKYVFMEV 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH +DQ R+ G++   G FTNL RDH+DYH+T + Y  AK + F++ +PK + ++   D
Sbjct: 180 SSHSIDQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNAFSLTNLD 238

Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303
           D      ++    + +    R LS  ++GK +  H + +    N  ++ +   G+     
Sbjct: 239 DKNGLVMTQNTRSKVYTYSLRSLS-DFKGKILESHFEGMLLDFNNHELAVHFIGR----- 292

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                 F   N L   G  + +G     VL  L  L  V GRF+ V  + +G    VDYA
Sbjct: 293 ------FNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAV-RSPKGITAIVDYA 345

Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR
Sbjct: 346 HTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPR 405

Query: 422 SEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            E+P+ I  +++ G+        I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 406 FEEPQDIINDMLAGLDKEDMQKTISIADRREAIKTACLLAQPGDVILVAGKGHE 459


>gi|332768875|gb|EGJ99054.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shigella flexneri
           2930-71]
          Length = 471

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 238/460 (51%), Gaps = 29/460 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++   +V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +      R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 452


>gi|332098132|gb|EGJ03105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 155-74]
          Length = 471

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|300984507|ref|ZP_07176999.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
 gi|300306676|gb|EFJ61196.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
          Length = 471

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 168/476 (35%), Positives = 245/476 (51%), Gaps = 24/476 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS++  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSSVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+   G+ +
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
               R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 416 VMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
 gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
          Length = 488

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 240/484 (49%), Gaps = 40/484 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  V  TGT+GK+
Sbjct: 59  AVVSETELSSEHLTVDFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGATGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  G  +  +G       F Q  + + TT S + +  +L+     G    
Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLATFKHAGADFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           I ADD    + +    +A    ++V     F    KV +    + + I    K  D  F 
Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287

Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F V N L+     ++ G     +L   + L  V GR E +   ++
Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  I
Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE 
Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466

Query: 472 VHIV 475
             I+
Sbjct: 467 YQII 470


>gi|270263954|ref|ZP_06192222.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
 gi|270042147|gb|EFA15243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
          Length = 471

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 241/479 (50%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +    +D + T     P++ +
Sbjct: 4   DSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAEDGAITEMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P   L + G +G +   +  Q + Q S L    +G T  +  
Sbjct: 64  SQLNQRLSALAGRFY-HQPAERLRLVGVTGTNGKTTTTQLLAQWSQL----LGETGAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  +G T  ++E SSHGL Q+R+  +   A 
Sbjct: 119 TVGNGLLGQVCPTENTTGSAVDVQHVLNELVDRGATFAAMEVSSHGLVQNRVAALPFAAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH     Y  AK  LF     +   AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMANYEAAKWSLFAG--HEVGQAIINADDEVGQRWLSKLPDAVAVT 236

Query: 268 ----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L +G  G+++    V    N   V  S    D +    L G F V N L+A    +
Sbjct: 237 MQDNLQLGCHGRWLKTTAVSYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G     ++E   +L  V GR E      +   + VDYAHT ++LE  L+  R    G+
Sbjct: 297 SLGYPLDKLVETGNQLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALEAARLHCQGQ 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPR+E+P+ I A+I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADI---LTGLLDAG 412

Query: 444 ------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
                  R EA+ +AI    +QDV++VAGKGHE   +V N     S D   +  +LG+I
Sbjct: 413 RALVIHGRAEAVTSAIMQAKEQDVVLVAGKGHEDYQLVGNRRLDYS-DRTTVARLLGVI 470


>gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
 gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
          Length = 505

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 167/473 (35%), Positives = 243/473 (51%), Gaps = 25/473 (5%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P++  E +I+ ++ DSR + AG +F A+ G+  DG  FI  AI  GA AI+  +     
Sbjct: 23  LPLELTESQIDAITLDSREVTAGSLFTAVNGHTVDGRRFIDTAIKAGASAIIAEADGIAN 82

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQIC 137
           +    ++    I+ + +    LS  A R +  HP+  LA   VTGT+GK++++  + Q  
Sbjct: 83  EGDIALKDGVYIIYLQDLNHKLSAIAGRFF-DHPDQKLALYAVTGTNGKTTISQLLAQWA 141

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  +  +G T   +    +    TT S I + + L+ L  QG    ++E SSHGL Q
Sbjct: 142 NLVGYKAGVMGTTGNGLLVDLKPAANTTGSAIEIQQTLAQLVEQGADFAAMEVSSHGLVQ 201

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  +   A  FTNL RDH+DYH   Q Y +AK  LF E   +   AII ADDA     
Sbjct: 202 GRIRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTE--HQSGIAIINADDAVGASW 259

Query: 257 MKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLP 307
           +    NA    +     V + G  + L       + Q VTI  +     GK   F  PL 
Sbjct: 260 LIDIPNAVAVAIDPQAVVNHTG--LKLWATDVQFSTQGVTIEFDSSWGQGK---FTAPLV 314

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F   N L+A    +A     A +LE   KL  V GR E V  ++    + VDYAHT +
Sbjct: 315 GSFNATNLLLALATLLATNHPMADLLEKAPKLQAVIGRME-VFQDTDKAMMVVDYAHTPD 373

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R    G++  +FGCGGDRD GKRP+M ++A  LAD  I+TDDNPRSEDP+ 
Sbjct: 374 ALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQIILTDDNPRSEDPKD 433

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I  +++ G+      I   +R  A R A+   + QD+++VAGKGHE   I+ +
Sbjct: 434 IVDDMLAGLISPESAIIIHDRETACRHALTHASYQDIILVAGKGHEDYQILAD 486


>gi|83748761|ref|ZP_00945776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|207744406|ref|YP_002260798.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724582|gb|EAP71745.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|206595811|emb|CAQ62738.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 514

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 241/485 (49%), Gaps = 32/485 (6%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA ++GN   + DG   IPQAI  GA A++  +   +    A +R
Sbjct: 32  DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               IL VD   +     A++ Y   G      + VTGT+GK+S + ++ Q   R G   
Sbjct: 92  ----ILPVDGLAELAGPLAAQWYAVPGPDALRAIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +G   T  + +       TTP  I L ++L+ L   G   V++E SSHGL+Q R DG 
Sbjct: 148 AVVGTLGTGFVDTLVATG-FTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGRADGT 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---- 258
           +     FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    ++     
Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLTGLRA 264

Query: 259 --RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYN 314
              A   G    +   +G    L+      ++   T  V+G         P+ G F V N
Sbjct: 265 DIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSN 324

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L   G+ +  G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L+
Sbjct: 325 QLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTLR 383

Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP++I   
Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDM 443

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G+      ++  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D + 
Sbjct: 444 IADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQEIA-GRKRPFSDQEH 502

Query: 489 IREIL 493
           +R  L
Sbjct: 503 VRLAL 507


>gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
 gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 153/474 (32%), Positives = 246/474 (51%), Gaps = 45/474 (9%)

Query: 19  SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           +I P+Q     E +I  V+ DSR +QAG +F+A+ G + DGH +IP AI +GA A++   
Sbjct: 9   AIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYIPAAIEKGAVAVLC-- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
               +D     +     + V ++ + +   A+  Y        ++ VTGT+GK+++A+ +
Sbjct: 67  ----EDVPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELVGVTGTNGKTTIATLL 122

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189
               +  G   +++G  ST+ ++  D  +    TTP PI L + L  ++  G  +V +E 
Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDQAIPTEHTTPDPITLNQLLGQMADSGCKYVFMEV 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH + Q R+ G++   G FTNL RDH+DYH+T + Y  AK + F++ +PK + ++   D
Sbjct: 180 SSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKGAFSLTNLD 238

Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303
           D      ++    + +    R LS  ++GK +  H + +    N  ++ +          
Sbjct: 239 DKNGLVMTQNTRSKVYTYSLRSLS-DFKGKILESHFEGMLLDFNNHELAVH--------- 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G F   N L   G  + +G     VL  L  L  V GRF+ V  + +G    VDYA
Sbjct: 289 --FIGRFNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAV-RSPKGITAIVDYA 345

Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++L  +L  I  +    G+II V G GG+RD+GKRPIM K A   +D  I+T DNPR
Sbjct: 346 HTPDALINVLNAIHGVLEGKGKIITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPR 405

Query: 422 SEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            E+P+ I  +++ G+        I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 406 FEEPQDIINDMLAGLDKDDMQKTISIADRREAIKTACMLAQPGDVILVAGKGHE 459


>gi|300938480|ref|ZP_07153220.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
 gi|300456549|gb|EFK20042.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
          Length = 471

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 244/479 (50%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKASDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATQL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|17547568|ref|NP_520970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum GMI1000]
 gi|21362686|sp|Q8XVI2|MURE_RALSO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17429872|emb|CAD16556.1| probable udp-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide
           synthetase) (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 514

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 237/486 (48%), Gaps = 34/486 (6%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA ++GN   + DG   IPQAI  G  A++  +   +    A  R
Sbjct: 32  DLTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGVSAVLAEAHGYVVPADAPAR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               IL VD   +     A++ Y   G     ++ VTGT+GK+S + ++ Q   R G   
Sbjct: 92  ----ILPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +G   T  + +       TTP  I L  +L+ L   G   V++E SSHGL+Q R DG 
Sbjct: 148 AVVGTLGTGFVDALVATG-FTTPDAIQLQHSLADLHRAGARAVAMEVSSHGLEQGRADGT 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +     FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    ++     
Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGGRLLA-GLR 263

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQVY 313
           AG   +  G  G+    +          V     G  FD            P+ G F V 
Sbjct: 264 AGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVS 323

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L   G+ +  G+     L  LEKL  V GR E  G    G  + VDYAHT ++LE  L
Sbjct: 324 NQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP+ I  
Sbjct: 383 RALAPITGARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQLILD 442

Query: 431 EIIHGI--PGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            I  G+  P   I+  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D +
Sbjct: 443 MIADGMEDPRLAIQIEDRAAAILHAVRHADVHDVIVVAGKGHESTQEIA-GRKRPFSDQE 501

Query: 488 IIREIL 493
            +R  L
Sbjct: 502 HVRLAL 507


>gi|300816123|ref|ZP_07096346.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
 gi|300531330|gb|EFK52392.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
          Length = 471

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTALGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 514

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 172/473 (36%), Positives = 247/473 (52%), Gaps = 41/473 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++  DSR + +G  F+A+ G  +DGH ++P+A   GA   +V      +D +A    +
Sbjct: 27  IVDLVDDSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGATLAIV------EDEAAARVID 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P +VV + R+  +L A+  +      I   AVTGT+GK++    ++ +   +G  +  I
Sbjct: 81  MPAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVGLLRHLLDVAGQRAASI 140

Query: 148 GPTSTISSFAQDN-----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           G    +   A +       LTTP P+ L + L  L+ +GVT V++E SSH L QHR+DG+
Sbjct: 141 GTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVAMETSSHALHQHRVDGV 200

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  FTNL RDH+DYH T +AY +AK+ L   L P +  A    DD   +  +     
Sbjct: 201 HFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLSLLAP-DGVACFNIDDVTWQHTVAEMDV 259

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-------------LFPLPGE 309
           +G +  S   +  F  L+   A      V     G  F+                PL G+
Sbjct: 260 SGSQA-SAPRRTTFSALQD--ADVTAHDVVYDATGSRFELRVRTAQGTTQHQVTLPLIGD 316

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V NAL AA   +A+GI    V + L +   VPGR E + T      +  DYAHT ++L
Sbjct: 317 FNVANALGAAAGALAMGITPQDVADGLSQSPQVPGRLERLRTEP---TVLRDYAHTPDAL 373

Query: 370 EMILKNIRTIT------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           E  L  +R  T        R+IVVFGCGGDRD+GKRP+MG IA  LAD+ IVT DNPR+E
Sbjct: 374 ERALLAVRPFTMRPDGAPSRLIVVFGCGGDRDRGKRPVMGSIAERLADVTIVTSDNPRTE 433

Query: 424 DPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DPE+I  +I  G+     +   +R +AI  A+ M +  DV+V+AGKGHET  I
Sbjct: 434 DPERILDDIEAGMTRRDHQRIVDRRDAIAAALRMASAHDVVVLAGKGHETYQI 486


>gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
 gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
          Length = 488

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 156/493 (31%), Positives = 253/493 (51%), Gaps = 57/493 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I+ +  DSR I+ G +FVA+ G + DGH +I +AI +GA A+V  +         T+
Sbjct: 20  DKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYIGKAIEKGATAVVCET------LPETL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V+++   +   A+  YG      +++ VTGT+GK+++A+ +  + ++ G   
Sbjct: 74  SETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLIGVTGTNGKTTIATLLYNMFRKFG--- 130

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           ++ G  ST+ ++     +    TTP PI L + L  ++ +G  +  +E SSH + Q R+ 
Sbjct: 131 YKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYAFMEVSSHAVAQKRIG 190

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+K   G FTNL RDH+DYH+T + Y  AK   F+ LL K + A+  ADD  +  VM + 
Sbjct: 191 GLKFAGGIFTNLTRDHLDYHKTFENYLKAKKAFFDGLL-KTAFALTNADD-RNGLVMTQN 248

Query: 261 HNAGC-------------RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             A               +VL  G++G  + +       N ++V +              
Sbjct: 249 TKAKVATYSLRSLADFKGKVLEDGFEGMLLDI-------NNREVNVQ-----------FI 290

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F   N L        +G     VL  L  L  V GRF+ +  +++G    VDYAHT +
Sbjct: 291 GRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSL-RSTKGYTAIVDYAHTPD 349

Query: 368 SLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +L  +L  I  + +GR  +I V G GG+RD+GKRPIM + A+ L+D  I+T DNPR E+P
Sbjct: 350 ALTNVLNTIHEVLNGRGKVITVVGAGGNRDKGKRPIMAQEAVRLSDRVIITSDNPRFEEP 409

Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           + I  +++ G+        +   +R EAIRTA  +    DV++VAGKGHE    +  G K
Sbjct: 410 QDIINDMLAGLKSNDMNKVLSITDRKEAIRTACMLAQAGDVILVAGKGHENYQDI-KGVK 468

Query: 481 KMSVDCDIIREIL 493
               D +++ EI 
Sbjct: 469 HHFDDKEVLSEIF 481


>gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 485

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 162/470 (34%), Positives = 245/470 (52%), Gaps = 24/470 (5%)

Query: 13  ELINQL-SIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+  L  I P++   + I    +  DSR ++ G +F  I G   DGH F  QA+ +GA 
Sbjct: 3   ELLRVLRGITPLKKEHQSIEIAHLEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A+V     +L         + P+++V +T++ ++  AS  YG+  +   ++ VTGT+GK+
Sbjct: 63  AVVAERPLAL---------DVPVVIVRDTKRAMARLASHFYGEPTKRLQLIGVTGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV   +  + + +G  +  IG   T I     + R TTP  + L +  + + ++ V    
Sbjct: 114 SVTHILDTMFREAGQKTGLIGTLYTKIGDETIETRNTTPESLVLQQRFASMVNKQVETAV 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPA 244
           +E SSH L   R+ G       FTNL  DHIDYH+T + Y  AK  LF +L        A
Sbjct: 174 MEVSSHALHLGRVRGCDYDIAVFTNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKTA 233

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +I +DD  S  +++        V++ G + +  ++ + +       + T+ V G+  D  
Sbjct: 234 VINSDDPASDRLIQMT---TADVVTYGIKKQADVYGENIKVSAAGTRFTLHVFGEKTDVQ 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F VYNAL AA      G+  + +   LEK+  V GRFE V    +   + VDYA
Sbjct: 291 LKLIGLFNVYNALAAAASAYVSGLSLSTIKASLEKVTGVAGRFEPVD-EGQDFTVIVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +SLE +L+ ++      I VV GCGGDRD  KRP+MG+IA+  AD  I T DNPR+E
Sbjct: 350 HTPDSLENVLQTVQDFADNDIHVVVGCGGDRDATKRPVMGRIAVQYADRTIFTSDNPRTE 409

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DP+ I A+I  G+    +    +R  AI  AI   N  D++V+AGKGHET
Sbjct: 410 DPDAILADITEGLDPDQYTVIVDRKTAIEQAIAAANTGDIVVIAGKGHET 459


>gi|299065603|emb|CBJ36775.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CMR15]
          Length = 514

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 237/488 (48%), Gaps = 38/488 (7%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA ++GN   + DG   IPQAI  G  A++  +          + 
Sbjct: 32  DLTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGVSAVLAEA------HGYVVP 85

Query: 88  SNTP--ILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           +N P  IL VD   +     A++ Y   G     ++ VTGT+GK+S + ++ Q   R G 
Sbjct: 86  ANAPARILPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGE 145

Query: 143 SSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
               +G   T  + +       TTP  I L  +L+ L   G   +++E SSHGL+Q R D
Sbjct: 146 RCAVVGTLGTGFVDALVATG-FTTPDAIQLQHSLADLHRAGARAIAMEVSSHGLEQGRAD 204

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G +     FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    ++   
Sbjct: 205 GTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGGRLLA-G 261

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQ 311
             AG   +  G  G+    +          V     G  FD            P+ G F 
Sbjct: 262 LRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRATVHSPMVGLFN 321

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L   G+ +  G+     L  LEKL  V GR E  G    G  + VDYAHT ++LE 
Sbjct: 322 VSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQ 380

Query: 372 ILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L+ +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP+ I
Sbjct: 381 TLRALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQLI 440

Query: 429 RAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              I  G+      ++  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D
Sbjct: 441 LDMIADGMEDPYAAVQIEDRAAAILHAVRHADVHDVIVVAGKGHESTQEIA-GRKRPFSD 499

Query: 486 CDIIREIL 493
            + +R  L
Sbjct: 500 QEHVRLAL 507


>gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
 gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
          Length = 488

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 240/484 (49%), Gaps = 40/484 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  G  +  +G       F Q  + + TT S + +  +LS     G    
Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK  LF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKGLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           I ADD    + +    +A    ++V     F    KV +    + + I    K  D  F 
Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287

Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F V N L+     ++ G     +L   + L  V GR E +   ++
Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  I
Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE 
Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466

Query: 472 VHIV 475
             I+
Sbjct: 467 YQII 470


>gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
 gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
          Length = 489

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 173/492 (35%), Positives = 254/492 (51%), Gaps = 50/492 (10%)

Query: 13  ELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +L+  LS  P  W     N     +  DSR +  G +F  + G   DGH F  +A+A+ A
Sbjct: 2   KLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARKA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126
            AIV     S+         + P+++V ++R+ +++ A   YG+  H  +++ VTGT+GK
Sbjct: 62  AAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           ++  S ++QI +++G  +  IG         S+   N  TTP  + L +    +  +GV 
Sbjct: 113 TTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAAN--TTPESLILQRTFKQMVDEGVE 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPK 240
            V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  LF +L     +
Sbjct: 171 FVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDE 230

Query: 241 ESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             P  A++  DD  S+      H     +++ G + K      V A    +Q+ I+  G 
Sbjct: 231 RRPKFAVLNHDDPVSQYY---KHMTAAPIVTYGMREK----SDVMA----EQIRITAGGM 279

Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            F    P         L G F VYN L AA  C+A G     +   L  +  VPGRFE V
Sbjct: 280 AFRLCTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV 339

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   I VDYAHT +SLE  LK +R +    + VV GCGGDRD+ KRP+M ++A+  
Sbjct: 340 -DEGQNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRY 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVA 465
           AD+AI T DNPRSEDP++I  ++  G+   I K     +R EAIR AI    + DV+++A
Sbjct: 399 ADVAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIA 458

Query: 466 GKGHETVHIVTN 477
           GKGHET  I+ N
Sbjct: 459 GKGHETYQIIGN 470


>gi|332098940|gb|EGJ03891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 3594-74]
          Length = 471

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 169/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++ +  V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTVPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 769

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 164/510 (32%), Positives = 266/510 (52%), Gaps = 50/510 (9%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      E +I  +  DSR + +G +FV  VG K DGHL++ +A  +GA 
Sbjct: 245 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADKRGAV 304

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGK 126
           A+V S    +++          +++V++T   L   A+  YG HP   +AV    GT+GK
Sbjct: 305 AVVASKEIDIEETLGC----KALVIVEDTSLVLPALAAAFYG-HPSKNMAVIGIVGTNGK 359

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL----TTPSPIYLAKALSYLSSQG 181
           ++ A  ++ + +  GL   + G  ST++ +    N+L    TTP  + + K ++ +   G
Sbjct: 360 TTTAYLIRAMYEAMGL---RTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNG 416

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240
              V +EASSHGL   R + +      FTNL RDH+D+H++++ Y NAK +LF  ++ P 
Sbjct: 417 TEAVVMEASSHGLALGRCNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPD 476

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGK 298
               I+  DD  +   + +  N    V++   + K   +H  K      + QV +     
Sbjct: 477 RHRKIVNIDDPNAPFFIAQG-NPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKG 535

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G I
Sbjct: 536 ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVI 595

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++L  +L ++R + + RII VFGC G+ D+GKRPIM KIA D +D+ I+T D
Sbjct: 596 -VDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTKIATDKSDVVILTSD 654

Query: 419 NPRSEDPEKIRAEIIHGIPGF----------------IEKGNRI-------EAIRTAIEM 455
           NP++EDP  I  +++ G+ G+                +  G+R+        A+R A+ M
Sbjct: 655 NPKNEDPLDILDDMLAGV-GWTMHDYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAM 713

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             + D++VVAGKGHET  I   G+KK   D
Sbjct: 714 GEEGDIVVVAGKGHETYQI--EGDKKEFFD 741


>gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Haemophilus influenzae 10810]
          Length = 488

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 158/483 (32%), Positives = 240/483 (49%), Gaps = 38/483 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +++  + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S
Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTS 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I
Sbjct: 179 IEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVI 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304
            ADD    + +    +A    ++V     F    KV +    + + I    K  D  F  
Sbjct: 237 NADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFES 288

Query: 305 ---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                    PL G F V N L+     ++ G     +L   + L  V GR E +   ++ 
Sbjct: 289 SWGNGVLHSPLIGAFNVSNLLLVITTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IV
Sbjct: 349 -TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIV 407

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE  
Sbjct: 408 TKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHY 467

Query: 473 HIV 475
            I+
Sbjct: 468 QII 470


>gi|238754431|ref|ZP_04615786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
 gi|238707260|gb|EEP99622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
          Length = 490

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 165/488 (33%), Positives = 242/488 (49%), Gaps = 32/488 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +     D S T  
Sbjct: 15  RALREMTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGIAADASITAM 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ + N  + LS  A + Y + P   L + G +G +   +  Q + Q S      +
Sbjct: 75  HGVPVIYLSNLNQHLSRLAGQFY-QQPGAALRLIGVTGTNGKTTTTQLLAQWSQ----AL 129

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + + + L  L  QG T  ++E SSHGL Q+R+
Sbjct: 130 GETSAVMGTVGNGLLGQVIPTENTTGSAVDVQQVLHSLVEQGATVAAMEVSSHGLVQNRV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD      + +
Sbjct: 190 AALPFAAAVFTNLSRDHLDYHGDMASYELAKWLLFST--HQSEHKIINADDDVGLRWLSQ 247

Query: 260 AHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              A    +      G+ G ++    V    N   +              L G F V N 
Sbjct: 248 LPQAVAVSMENKVPQGWSGPWLSASHVDYHDNGATINFDSSWGKGQLDSRLMGAFNVSNL 307

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA    +++    A +L    +L  V GR E      +   + VDYAHT ++LE  L  
Sbjct: 308 LVALSTLLSLDYPLADLLAAAPQLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G
Sbjct: 367 ARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQLADRVVVTDDNPRSEEPQAIVADILGG 426

Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDI 488
           +   ++ G       R EA+ +AI    + DV++VAGKGHE   +V  G +++   D   
Sbjct: 427 L---MDAGRVLAIHGRAEAVTSAIMQAKEDDVVLVAGKGHEDYQLV--GHRRLDYSDRIT 481

Query: 489 IREILGLI 496
           +  +LG++
Sbjct: 482 VARLLGVV 489


>gi|315300014|gb|EFU59252.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 16-3]
 gi|323190233|gb|EFZ75509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli RN587/1]
 gi|324012248|gb|EGB81467.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 60-1]
          Length = 471

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 168/476 (35%), Positives = 244/476 (51%), Gaps = 24/476 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+   G+ +
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
               R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 416 VMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 481

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/495 (31%), Positives = 259/495 (52%), Gaps = 38/495 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +N  S+F ++ ++ ++  +++D+R ++ G +FV I G   DGH F   A   GA AIV  
Sbjct: 1   MNIKSLFNVE-QDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCE 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
             Y L++ +       P ++V +T   L   A  ++ K  E  N+  +TGT+GK++ A  
Sbjct: 60  --YELENIA------IPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYI 111

Query: 133 VQQICQRSGLSSFQ--IGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +     L+ F+  +G   T     ++   + + TTP P+ L +    +  +GV  V+
Sbjct: 112 LEHL-----LTGFEGHVGYIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVA 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L+ HR+D  +     FTNL  +H+D+H T   YF AK +LFE L P +   I+
Sbjct: 167 IEVSSHALELHRVDYCQFKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTP-DGHGIV 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             DD Y ++++ R   +   V + G      ++ + IH+             ++     +
Sbjct: 226 NLDDEYGEKLVNRLKESQTAVYTYGIESDADFKAEDIHMTSFGT-----SFKLTCPEGIY 280

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G F VYNAL A     +  +    ++  ++ L  V GR E +    +   + V
Sbjct: 281 EVQTPLLGRFNVYNALGAMASAYSASMPMEQIIALIKTLSPVDGRMEII-NEGQDFTVIV 339

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + +E +L+ +  I    + VV GC GDRD+ KRP++ K+++D AD  I T D+P
Sbjct: 340 DYAHTPDGVEKVLEFVTGIKQNGVKVVIGCPGDRDRTKRPVIAKLSVDYADDVIFTTDDP 399

Query: 421 RSEDPEKIRAEIIHGI-PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            SEDP  I  E++ GI P   E   +RIEAI TAI    K D++++AG+GHE +    +G
Sbjct: 400 HSEDPVDILNEMVSGIKPMNYEVIVDRIEAIETAINKAQKNDIVLIAGRGHEQIQYWKSG 459

Query: 479 EKKMSVDCDIIREIL 493
             ++  D ++ +E+L
Sbjct: 460 NIRLD-DREVAKEVL 473


>gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae Rd KW20]
 gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
 gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae Rd KW20]
 gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
          Length = 488

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 238/484 (49%), Gaps = 40/484 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++        LS  A   Y     N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVAFIGNVPVVKYYQLAHHLSSLADVFYDSPSNNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++  + Q  +  G  +  +G       F Q  + + TT S + +  +LS     G    
Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSAFKHAGADFT 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +
Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           I ADD    + +    +A    ++V     F    KV +    + + I    K  D  F 
Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287

Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F V N L+     ++ G     +L   + L  V GR E +   ++
Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  I
Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+E   +I  +I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE 
Sbjct: 407 VTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466

Query: 472 VHIV 475
             I+
Sbjct: 467 YQII 470


>gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
 gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
          Length = 506

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 164/501 (32%), Positives = 254/501 (50%), Gaps = 29/501 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F E++  ++   ++     +  V  DSR    G +FVA+ G   DG+ ++  A+  GA A
Sbjct: 3   FEEIVRGVTTLAVRLAPVDVRGVEYDSRRTGTGSLFVAMRGEATDGNRYVAVALKLGAVA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKS 127
           ++  S    +D   T RS+  + +V+  R+ L+  ++  +G HPE +L   AVTGT+GK+
Sbjct: 63  VLTDSPTVFEDL--TSRSDIGVALVEYGRRALAEVSANFFG-HPEQVLKLCAVTGTNGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A  ++ + +     S  +G   T +    + +  TTP    + +  +     G T   
Sbjct: 120 TTAFLIEGLLRSVSRKSVLLGTIETHVVENVRPSPHTTPESRDVLEIFAEGVRAGATEAV 179

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPA 244
           +E SSH L Q R+ G+ L    FTNL +DH+DYH T   Y  AK  +F  +  LP    A
Sbjct: 180 MEMSSHALVQERVWGLPLDVAVFTNLTQDHLDYHGTMGEYARAKALMFRGVGTLPPRI-A 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I ADD  +  +++ A  +GC V +  Y+       +         V +     +F  + 
Sbjct: 239 VINADDPSAGMMVEAA--SGCEVWT--YRVGAREFDENAYEFVADDVKLGAGWTEFALVT 294

Query: 305 P---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           P         L G   VYN + A    +A G+     +    +L  VPGRFE VG N  G
Sbjct: 295 PMGERVVRSQLTGRVNVYNLVAAMATGMARGLSLDECVRGAAELLPVPGRFETVG-NDLG 353

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + VDYAHT ++L  ++   R +   GR+I +FGCGGDRD+ KRP MG+ A D +D+ I
Sbjct: 354 ITVVVDYAHTDDALRNLIGLARELVGEGRVITMFGCGGDRDRTKRPKMGRAAGDGSDLVI 413

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           VT DNPRSEDP  I A+++ G+      +E + NR  AIR AI +    D++++AGKGHE
Sbjct: 414 VTSDNPRSEDPAAIAADVLVGLQDTKAIVEVELNRHVAIRRAITVAKAGDIVLLAGKGHE 473

Query: 471 TVHIVTNGEKKMSVDCDIIRE 491
              +   G   +SV  D + E
Sbjct: 474 REQVSRQGSILVSVPFDDVME 494


>gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
 gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
          Length = 494

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 243/475 (51%), Gaps = 35/475 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ + ++S    AG +F+ I G + DG  F   A+A GA A +VS           ++ 
Sbjct: 22  EVDGIKTNSDDCGAGDLFIGIPGTRVDGGEFWQSALASGAVAAIVSPE--------AVQK 73

Query: 89  NTP-----ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
           N P     ++   N  K  +  ++  YG   + +  L VTGT+GK++    ++    +  
Sbjct: 74  NPPTPESLVISASNMNKACAQISAAFYGYPGQQLRMLGVTGTNGKTTTTHLIEYFLTKVN 133

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L +  +G   T    F+Q    TTP  + L + L+     G     +E SSH L Q R+ 
Sbjct: 134 LPAALLGTLYTRWPGFSQTAAFTTPFAVDLQQRLAQAVDAGCEFGVMEVSSHALAQDRVF 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVMK 258
           G       FTNL +DH+DYHQ  + YF AK  LF    P   +  AII ADD Y + ++ 
Sbjct: 194 GCPFEVAVFTNLTQDHLDYHQDMEDYFGAKALLFS---PDYLQGRAIINADDEYGQRLIT 250

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VEGKDFDFLFPLPGEFQVYN 314
                     SV      + +  +    N Q + +S        D  F  PL G++ + N
Sbjct: 251 GLSKERVWTYSVNNHHADLRMSDL----NYQPIGVSGILHTPKGDVAFSSPLVGQYNLEN 306

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSNSLEMIL 373
            L A    + +G+D  LV   + K   VPGR E V  ++++   + VDYAHT +SL  +L
Sbjct: 307 LLAAVAAVLHLGLDLQLVANAISKFTGVPGRMERVQISHNKDVSVIVDYAHTPDSLGNLL 366

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K++R    GRII VFGCGGDRD+ KRP MGKIA +LADIA+VT DNPR+EDPE+I  +I+
Sbjct: 367 KSVRAFIPGRIICVFGCGGDRDRTKRPKMGKIAAELADIAVVTSDNPRTEDPERIIEDIL 426

Query: 434 HGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            GIP  ++     +R  AIR AI      D +++AGKGHE   I+  G +K+  D
Sbjct: 427 AGIPDTLQPMVICDRATAIRAAILEAKPGDGVLLAGKGHEDYQIL--GTEKIHFD 479


>gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Herminiimonas arsenicoxydans]
 gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Herminiimonas
           arsenicoxydans]
          Length = 508

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 242/483 (50%), Gaps = 46/483 (9%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SDSR I  G +F+A  G++ DG  +I  AI +GA+AI+  +A    D       N P L 
Sbjct: 27  SDSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDE----EWNVPHLA 82

Query: 95  VDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +DN R      A+  YG HP++ +   AVTGT+GK+S + ++     R G  +  IG T 
Sbjct: 83  IDNLRACAGFIAAAYYG-HPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIG-TL 140

Query: 152 TISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +  F             TTP  + L + L  +   G T +++EASS GL Q RL G+  
Sbjct: 141 GVGIFKHGEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHF 200

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTN  RDH+DYH    AY  AK  LF+   P    A++  DDA    +++R     
Sbjct: 201 DMALFTNFTRDHLDYHGDMAAYEAAKTMLFD--WPGLRHAVVNLDDALGVRLVERLKR-- 256

Query: 265 CRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFL---------FPLPGEFQVY 313
            R   +G  G  +  + V  I   +   +  +  G  F              L GEF V 
Sbjct: 257 -RQSGIGITGYTLTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVS 315

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L   G+ +A GI  + V+  +E L  VPGR + +G  +    + +DYAHT ++LE  L
Sbjct: 316 NVLGIIGILLAKGIALSNVVAAIEALTSVPGRMQQLG-GAEAPLVVIDYAHTPDALEKTL 374

Query: 374 KNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +R + +   G +  VFGCGGDRD GKRP MGK A+  AD  IVT DNPR E+P  I A
Sbjct: 375 ATLREVANERGGALWCVFGCGGDRDAGKRPQMGKAAM-AADHIIVTSDNPRHEEPASIIA 433

Query: 431 EIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           +I+ G+      P  +E  +R +AI  A     KQDV+++AGKGHE    +  G K+  +
Sbjct: 434 QIVAGMDVAKNAPHIME--DRAKAILYAGRHAAKQDVILLAGKGHEAYQEI-KGRKQPFL 490

Query: 485 DCD 487
           D D
Sbjct: 491 DAD 493


>gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 494

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 158/481 (32%), Positives = 245/481 (50%), Gaps = 35/481 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ DSR +  G +F A  G+K DG  F   A+A+GA A V+S + +  D +A    
Sbjct: 24  EVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADALARGAVA-VISESLAPPDLAARW-- 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V++ R  L+L A   +G+  E +    +TGT+GK++ A     + + +G  +  
Sbjct: 81  ----IQVEHGRHALALAARTFFGRPDERLGLTGITGTNGKTTTAYLTDSVLRAAGGVTAM 136

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           IG   TI        L    TTP  + L +  S L   G THV++E SSH L   R+ G+
Sbjct: 137 IG---TIEYHLAGRVLKAVNTTPESLDLLQIFSDLLRAGGTHVTMEVSSHALALGRVHGL 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKR 259
                 FTNL RDH+D+H   + YF AK  LFE      +P   A++  DD YS+ +  R
Sbjct: 194 NFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEG--AGGNPPRFAVLNTDDEYSRRL--R 249

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            H    R+         +  + + +     +  +    + F    PL G+  VYN L A 
Sbjct: 250 LHARTERLWYGMTPEADLRPRHIVSSFKGLRFDLQFRKQRFTIESPLIGKINVYNILAAC 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G+   +V   +  L  VPGRFE V    +   + VDYAHT ++L  ++   R +
Sbjct: 310 ATGFSYGLAPEVVARGIASLKAVPGRFERV-DEGQPFVVVVDYAHTDDALRNVIAVARGL 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              R+I +FGCGGDRD+ KRP+MGK A + +D  ++T DNPRSEDP  I  + + GI   
Sbjct: 369 NPRRVITLFGCGGDRDRAKRPLMGKAAAEASDFVVLTSDNPRSEDPLTIMNDALVGIRRT 428

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD---IIREI 492
               + + +R  AIR AI+   + D++++AGKGHET  ++    K  ++D D   + RE+
Sbjct: 429 DVAHVVEPDREAAIRRAIKEAREGDIVILAGKGHETYQVL----KDKTIDFDDRAVAREV 484

Query: 493 L 493
           L
Sbjct: 485 L 485


>gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
 gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
          Length = 502

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 162/486 (33%), Positives = 245/486 (50%), Gaps = 29/486 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER I+ V+ DSR ++ G++F+A+ G    G  F  +A++QGA AI+        D + + 
Sbjct: 25  ERPIHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQGAAAILWQPTPGFDDQALSA 84

Query: 87  RSN---TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
           R      P + V +    + + A+R YG    N  ++ VTGT GK+SV+ F+       G
Sbjct: 85  RCAKQAVPCIAVHSLHAQVGIIAARFYGDPGANMTVIGVTGTDGKTSVSQFIAHAL---G 141

Query: 142 LSSFQIGPTSTISS-----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              ++ G   T+         +   LTTP PI L   L+ L ++    V +E SSH LDQ
Sbjct: 142 RKEYRCGILGTLGCGLPGHLRRVTSLTTPDPITLQCELNQLRARHAQAVVIEVSSHALDQ 201

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL G+       TNL RDH+DYH +Q AY  AK  LF+   P+    ++  DD + + +
Sbjct: 202 QRLAGVGFDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQR--PELHTVVVNVDDDFGRSL 259

Query: 257 MKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                +A  RV+     G +   +   ++ A  +  ++ +   G        L G F   
Sbjct: 260 RASVRHA--RVIGYSLAGIETAQLRCLRLAAQSDGLRLLLDAGGCRAAVRVGLLGRFNAA 317

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A G  +A+ +     L+ L  L  V GR E  G+  R   + +DYAHT   L+  L
Sbjct: 318 NVLAALGALLALDVPLREALQRLSLLQPVSGRMERYGSEGRP-TVVIDYAHTPAGLQAAL 376

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R   +GRI  VFGCGGDRD+GKRP+MG +A   AD  I+T+DNPR+E+P +I AEI 
Sbjct: 377 AAMREHFAGRIWCVFGCGGDRDRGKRPLMGALARASADRIIITNDNPRTENPRRIIAEIQ 436

Query: 434 HGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            G         IE  +R EA+  +I     +D ++VAGKGHE   ++   +   S D + 
Sbjct: 437 AGAGADSRVRVIE--DRREAVIHSIRAAAPEDAILVAGKGHEEYQLIGTRQLPYS-DRET 493

Query: 489 IREILG 494
           +++ LG
Sbjct: 494 VKQALG 499


>gi|329298854|ref|ZP_08256190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plautia stali symbiont]
          Length = 495

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 165/480 (34%), Positives = 243/480 (50%), Gaps = 16/480 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + +++ DSR   AG +F+A+ G+  DG  FIPQAIAQG  A++  +     D      
Sbjct: 20  RPLRDMTLDSRAAAAGDLFIAVAGHHADGRRFIPQAIAQGVAAVIAEAEGEASDGDIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y + P + L + G +G +   +  Q I Q + L     
Sbjct: 80  HGVPVIYLAQLPQRLSALAGRFY-QQPADKLKLIGVTGTNGKTTTTQLIAQWANLLGETG 138

Query: 148 GPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               T+ +  + Q   +  TT S + +   L  L  QG T  ++E SSHGL QHR+  + 
Sbjct: 139 AVMGTVGNGLYGQLVPSENTTGSAVDVQHILHDLVGQGATVAAMEVSSHGLVQHRVAALP 198

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A  FTNL RDH+DYH   Q Y +AK  LF E    E  AII ADD   +  +++  +A
Sbjct: 199 FAAAVFTNLSRDHLDYHGDMQGYESAKWLLFSEHQVGE--AIINADDEVGRRWLEKLPDA 256

Query: 264 GCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               LS     G +G+++    +        V  S    + +F   L G F V N L+A 
Sbjct: 257 VAVTLSNNLQPGCRGRWLQATVIDYHDGGAHVQFSSSWGNGEFDSRLMGAFNVSNLLLAL 316

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              + +      ++    +L  V GR E V T      + VDYAHT ++LE  L+  R  
Sbjct: 317 ATLLTLDYPLDTLVASASQLQPVCGRME-VFTAVHKPTVVVDYAHTPDALEKALEAARLH 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
             G++  VFGCGGDRD+GKRP+MG IA   ADI ++TDDNPRSE+P  I  +I+ G+  P
Sbjct: 376 CKGQLWCVFGCGGDRDKGKRPLMGAIAEQFADIVVITDDNPRSEEPTAIINDILTGLLDP 435

Query: 438 G-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           G       R +A+  A+   +  D+++VAGKGHE   I+ N     S D D +  +LG++
Sbjct: 436 GRACVIAGRAQAVTHAVMQASADDIVLVAGKGHEDYQIIGNRRLDYS-DRDTVARLLGVM 494


>gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 491

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +  + +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DD  + E M+   +    V++ G      +  K +         T+    +  +  
Sbjct: 237 VLNNDDVVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHETYQII 466


>gi|323165968|gb|EFZ51748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella sonnei 53G]
          Length = 492

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 172/489 (35%), Positives = 252/489 (51%), Gaps = 32/489 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +    +     IR
Sbjct: 15  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKAKDEATDGEIR 74

Query: 88  S--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L   
Sbjct: 75  EMHGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL--- 130

Query: 146 QIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QH
Sbjct: 131 -LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQH 189

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  +
Sbjct: 190 RVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWL 247

Query: 258 KRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            +  +A    +    +    G+++    V    +   +  S    D +    L G F V 
Sbjct: 248 AKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L
Sbjct: 308 NLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKAL 366

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I 
Sbjct: 367 QAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI- 425

Query: 434 HGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    
Sbjct: 426 --LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVT 483

Query: 488 IIREILGLI 496
           + R +LG+I
Sbjct: 484 VAR-LLGVI 491


>gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
 gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
          Length = 496

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 167/489 (34%), Positives = 245/489 (50%), Gaps = 36/489 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR +  G +F A+ G + DGH F  +A  +GA A+V             +  
Sbjct: 21  EITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPVECAPARLLLAP 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +    +      F    A RL       + AVTGT+GK++V +++ + C R+  ++  +G
Sbjct: 81  SARRAMALAAASFHGRPAERL------RMAAVTGTNGKTTV-TYLVEACARA--AAVPVG 131

Query: 149 PTSTIS-SFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TIS  F   +R    TTP    +   L+ + + G     +E SSH L Q R+ GI+ 
Sbjct: 132 VLGTISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEVSSHALAQERVAGIRF 191

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH+   AYF AK RLF E L     A+I A D +   +  +    G
Sbjct: 192 QAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL-GPG 250

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            RV   G + G  +   +V         T            PL G+  + N L AAGL +
Sbjct: 251 PRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGALAIRSPLVGQHNLENLLCAAGLAL 310

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+    V+  L   H  PGR E +  + RG  ++VDYAHT ++L  ++  +R ++  R
Sbjct: 311 GLGLPPDAVVRGLAASHGAPGRLERI--DGRGLSVFVDYAHTDDALARMIAALRGLSPRR 368

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           +I VFGCGGDRD+GKRP+MG  A   AD+AIVT DNPR+EDP  I A+++ G+       
Sbjct: 369 LICVFGCGGDRDRGKRPLMGAAAA-AADLAIVTSDNPRTEDPLAIIADVLPGLDRAGKPA 427

Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                      G++ + +R  AI  A+E   + D ++VAGKGHE    V   EK+   D 
Sbjct: 428 LGAARARTGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKGHEDYQQV-GAEKRPFSDR 486

Query: 487 DIIREILGL 495
           D  R+ LG+
Sbjct: 487 DEARKALGI 495


>gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 463

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 242/461 (52%), Gaps = 33/461 (7%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +F M    +K N ++ +S+ +    +F AI G  +DGH FI +AI +GA  +V    +  
Sbjct: 1   MFTMNLDCKKYN-ITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPF-- 57

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137
           +DF         I+VV++++K         +    E+  ++ VTGT+GK+S    +  I 
Sbjct: 58  KDFKN-------IIVVEDSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAIL 110

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +     ++ G   T+  +   N +     TTP        LS    +G+  V+ E SSH
Sbjct: 111 SQK----YKGGIIGTMY-YKLGNEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSH 165

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            LDQ R+   K  A  FTNL +DH+DYH+T + YFNAK RLF++   +    ++  DD Y
Sbjct: 166 ALDQLRVYPTKFFATVFTNLTQDHLDYHKTMENYFNAKRRLFKDY--EYEVCVLNIDDDY 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              + +   +   + ++ GY     HLK        +      + K ++    L G+FQ 
Sbjct: 224 GSMLYEEFKD---KAITYGYSEN-AHLKIDYFDQENKVFGFYYKNKHYEIKTNLKGDFQA 279

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN   +  L   +G D   +   +  L  +PGRFE +  N  G ++ +DYAHT ++LE +
Sbjct: 280 YNMGASILLGFYMGFDIEEIQRGILSLSSIPGRFETIELN--GVKVVIDYAHTPDALEKL 337

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK  + IT  R+I VFG GG+RD+ KRP MGKIA +L+DI+I+T DNPR E+   I  +I
Sbjct: 338 LKTAKAITKNRLICVFGAGGNRDKTKRPKMGKIASELSDISIITSDNPRFEESMDIIKDI 397

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           + GI    G + + +R +AI  A+++    DV+V+AGKGHE
Sbjct: 398 LEGIDPSKGPMVEEDRKKAIALALDIALDGDVVVIAGKGHE 438


>gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
 gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
          Length = 487

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 163/485 (33%), Positives = 252/485 (51%), Gaps = 42/485 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I ++  DSR ++ G +FVA+ G + DGH FI +A+A GA+A++       +   + +
Sbjct: 21  EVQIQDIVFDSRKVKEGSVFVAVPGTQVDGHDFIDKALALGAKAVI------FEKLPSEL 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +     + V N+ K + + A   +    E   ++AVTGT+GK++  + + Q+  R G S+
Sbjct: 75  QKGITYVQVVNSAKAMGIMAGNYFDNPSEKLKVVAVTGTNGKTTTVTLLHQLFMRMGYST 134

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              G  ST+ +   +  +    TTP  + +   L  +   G TH  +EASSH + Q R+ 
Sbjct: 135 ---GLLSTVENKINEEVIPATHTTPDSVSIQALLKQMLEAGCTHCFMEASSHAIVQERIA 191

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+KL    FTN+  DH+DYH T   Y  AK +LF+E LPK + A++  DD   K  M   
Sbjct: 192 GLKLAGAVFTNISHDHLDYHLTFDEYIKAKKKLFDE-LPKAAFALVNGDD---KRGMVML 247

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQVYNA 315
            N      + G         K  A    + ++ ++EG + D       F + G F  YN 
Sbjct: 248 QNCKGSHQTFGL--------KTPAEFKAKIISNTLEGLELDINGTLIWFMMIGAFNAYNL 299

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L   G  + +G +   VL  L  +    GRF+ +     G    VDYAHT ++L+ +LK 
Sbjct: 300 LGVLGTAVLLGEEEEEVLRELSGIKGARGRFDRISIG--GVTAIVDYAHTPDALDNVLKT 357

Query: 376 IRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           I  + +G  ++I + GCGG+RD+ KRPIM KIA+  +D  I+T DNPR EDP  I  ++ 
Sbjct: 358 INGVRTGVEQLITIVGCGGNRDKTKRPIMAKIAVQESDKVILTSDNPRFEDPMDILKDMQ 417

Query: 434 HGIP-GFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            GI    I K     +R EAI+TA  + NK D++++AGKGHE    +  G K    D +I
Sbjct: 418 TGIGVSEIRKSLTIEDRKEAIKTACMLSNKGDIILIAGKGHEDYQEI-KGVKHHFDDAEI 476

Query: 489 IREIL 493
           + E L
Sbjct: 477 VTEYL 481


>gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2846]
          Length = 488

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 158/483 (32%), Positives = 240/483 (49%), Gaps = 38/483 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +++  + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S
Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTS 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I
Sbjct: 179 IEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVI 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304
            ADD    + +    +A    ++V     F    KV +    + + I    K  D  F  
Sbjct: 237 NADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFES 288

Query: 305 ---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                    PL G F V N L+     ++ G     +L   + L  V GR E +   ++ 
Sbjct: 289 SWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IV
Sbjct: 349 -IVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIV 407

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE  
Sbjct: 408 TKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHY 467

Query: 473 HIV 475
            I+
Sbjct: 468 QII 470


>gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2866]
          Length = 488

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 239/483 (49%), Gaps = 38/483 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V  +  S +  +     N P++      + LS  A   Y    +N+  + VTGT+GK+
Sbjct: 59  AVVSETELSSEHLTVAFIGNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +++  + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S
Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTS 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL QHR++ +      FTNL RDH+DYHQ+ + Y  AK RLF EL       +I
Sbjct: 179 IEVSSHGLAQHRVEALHFKVAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVI 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304
            ADD    + +    +A    ++V     F    KV +    + + I    K  D  F  
Sbjct: 237 NADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFES 288

Query: 305 ---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                    PL G F V N L+     ++ G     +L   + L  V GR E +   ++ 
Sbjct: 289 SWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IV
Sbjct: 349 -TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIV 407

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + DV+++AGKGHE  
Sbjct: 408 TKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHY 467

Query: 473 HIV 475
            I+
Sbjct: 468 QII 470


>gi|301026107|ref|ZP_07189582.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
 gi|300395678|gb|EFJ79216.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
          Length = 471

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 167/479 (34%), Positives = 245/479 (51%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++   +V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I   + G ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|54293892|ref|YP_126307.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
 gi|53753724|emb|CAH15182.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
          Length = 483

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 167/493 (33%), Positives = 250/493 (50%), Gaps = 45/493 (9%)

Query: 25  WRERKI-----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           W +R I     +++ +DSR ++ G +F A  G   DG L+I +A+A GA A+V       
Sbjct: 10  WIKRDIIDGTVSDIKNDSRLVKEGDLFAAYPGAASDGRLYIEKAVASGAAAVVYEPNNLP 69

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQI 136
           Q    T+ +  P + +    + L   A R +  +P   L    VTGT+GK+++A  + Q 
Sbjct: 70  QGI--TLPTAIPCIAIPQLAEKLGEIAKRFFN-NPSQFLGLTGVTGTNGKTTIAYQLAQA 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
               G  S  IG   TI     D       TTP  + L + +     +G+  V +E SSH
Sbjct: 127 HDLLGQHSAYIG---TIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSH 183

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L QHR+D ++     FTNL  DH+DYHQT QAY  AK RLFE    +   AII  DD  
Sbjct: 184 ALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFER--SELQWAIINQDDD- 240

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----- 307
            +++M        + ++ G       + + C +    Q  + + G + +   P       
Sbjct: 241 CQDLMSNVLKTHVKKVTYG-------MHQNCDV-KAIQWNMDITGTEIEVKSPWGHHLLK 292

Query: 308 ----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G+F +YN+L      +A G +   V++ + +L   PGR E V   ++   + VDYA
Sbjct: 293 IKALGKFNIYNSLAVYSSLLASGYNPEKVVQIMAELKAAPGRMEIV---AQSPYVLVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE +L  ++ I  GR+ VVFGCGGDRD+ KRPIMGK A   AD  ++T DNPRSE
Sbjct: 350 HTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVITSDNPRSE 409

Query: 424 DPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DPE I  EI  G+P         NR EAI  A+      D++++AGKGHE+   + N + 
Sbjct: 410 DPEIILNEIACGMPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESYQQIGNTKH 469

Query: 481 KMSVDCDIIREIL 493
             S D +++R ++
Sbjct: 470 VFS-DQEVVRRLM 481


>gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
 gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
          Length = 484

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/464 (32%), Positives = 229/464 (49%), Gaps = 42/464 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ ++  ++ G IFV + G + DGH    + +++GA  IV        D     +  
Sbjct: 23  VTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTD-----HDIKCGKQ-- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              LV DNTR  L+   +  YGK  E +  LAVTGT+GK++ A FV+ I    G     +
Sbjct: 76  ---LVTDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTTLGKKCGCV 132

Query: 148 GPTSTISSF-----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           G     +       +Q    T P    L   L  + S G  +  +EASS  LDQ+R+   
Sbjct: 133 GTAGNDTCSGELKPSQHGTPTVPRATVLYSWLGEMVSNGADYCVMEASSQALDQYRIGDE 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           ++    FTNL RDH+DYH T + YF AK R+F         A+I  DD Y K + +   +
Sbjct: 193 RIAVAGFTNLTRDHLDYHGTMENYFQAKRRVFTMC----KTAVINIDDEYGKRLAQEFSD 248

Query: 263 AGCRVLSVG---YQGKFIHLKKV-CA---IHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                 + G   Y  +FI +    C+   ++ +++    V+         + G + V N+
Sbjct: 249 IAVTYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVD-------MNMTGLYNVQNS 301

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILK 374
           L A  +  A+G D     + L  L  V GR   V    RG   +  DYAHT ++L  +L 
Sbjct: 302 LCAIAMVTALGFDMTECAKALSDLDGVDGRMNVV---YRGDFTVITDYAHTDDALIKVLS 358

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++ +T GR+I VFG  GDRD+ KRP+M K A D ADI ++T DNP  E+P++I  E++ 
Sbjct: 359 TLKPLTKGRLICVFGAAGDRDKEKRPMMAKAAEDNADILVITSDNPAHENPDEIIREVMT 418

Query: 435 GIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           GI G        +R EAI  A++   K DV+ + GKGHET  I+
Sbjct: 419 GISGKKPCRCITDRREAIAYALDTARKDDVIALCGKGHETYQII 462


>gi|74310704|ref|YP_309123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sonnei Ss046]
 gi|73854181|gb|AAZ86888.1| meso-diaminopimelate-adding enzyme [Shigella sonnei Ss046]
          Length = 497

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 172/489 (35%), Positives = 252/489 (51%), Gaps = 32/489 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +    +     IR
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKAKDEATDGEIR 79

Query: 88  S--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L   
Sbjct: 80  EMHGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL--- 135

Query: 146 QIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QH
Sbjct: 136 -LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQH 194

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E    +  AII ADD   +  +
Sbjct: 195 RVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWL 252

Query: 258 KRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            +  +A    +    +    G+++    V    +   +  S    D +    L G F V 
Sbjct: 253 AKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 312

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L
Sbjct: 313 NLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKAL 371

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I 
Sbjct: 372 QAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI- 430

Query: 434 HGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    
Sbjct: 431 --LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVT 488

Query: 488 IIREILGLI 496
           + R +LG+I
Sbjct: 489 VAR-LLGVI 496


>gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 501

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 158/460 (34%), Positives = 236/460 (51%), Gaps = 38/460 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S  S+ IQ   IFVA  G   DGH FI  AI  GA  IV       +   ++I   
Sbjct: 26  IERISMYSKIIQKNMIFVAKKGKTTDGHEFITNAIQNGAHTIVC------EKIPSSIHKK 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              ++V ++   L + +S  Y  HP     ++ +TGT+GK+SVA+ + Q+  + G  +  
Sbjct: 80  ITYVLVPDSMNALGIISSNFYD-HPTKKIKLIGITGTNGKTSVATILHQLFSKMGEKNIL 138

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           I      I S       TTP+ I + K L+    +G  +  +E SSHG+ Q R+ G+   
Sbjct: 139 ISTMGIQILSKKYPTTHTTPNIIEINKYLNLSIRKGCKYAFMEVSSHGIHQKRIAGLLFQ 198

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G FTN+  DH+DYH++   Y + K   FE L  K++ A+I +DD  S +++K       
Sbjct: 199 GGVFTNITHDHLDYHESFDHYLSTKKFFFENL-SKKAFALINSDDENSYKIIKD------ 251

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAG 320
            +LS  Y   F  LKK  A    Q +  S+ G             L G F VYN L    
Sbjct: 252 -ILSKTY---FYGLKK-NANFKIQILKESIHGSQLLIDGHKIFTKLIGTFNVYNLLAGYA 306

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             I +G     +L+ ++ +  + GRFE   +NS G R+ VDYAH  + L+ +L  ++ I 
Sbjct: 307 TAILLGKKKDNILKKIKNIKPIRGRFEQFISNS-GIRVIVDYAHNPDGLKTVLNTLKKIK 365

Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-------RAE 431
           +  G++I V GCGG+RD  KR +MGKI  +  D++I T DNPR ED EKI       ++ 
Sbjct: 366 NDDGKLICVIGCGGNRDIKKRSLMGKIVYETCDVSIFTSDNPREEDREKILVDMKNFKSS 425

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I       +   NR +AI TAI++  K+D++++AGKGHET
Sbjct: 426 IYKDKESILTFVNRKKAIETAIQIAKKKDIILIAGKGHET 465


>gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 484

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 246/479 (51%), Gaps = 41/479 (8%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E++N +    +Q  +  +I+ +  DSR +  G +FVA+ G   DGH +I QAI  GA 
Sbjct: 4   LSEILNGIPATELQGADDMQISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDGAV 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126
           AIV       +D  A        ++V ++   L   A+  Y  HP +   ++ VTGT+GK
Sbjct: 64  AIVC------EDLPAHTIGEVAFMMVADSAVALGQIAANFY-DHPSDKLKLVGVTGTNGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           ++VA+ + Q+    G   ++ G  ST+ +      +    TTP  + L   L+ + +QG 
Sbjct: 117 TTVATLLYQLFHDLG---YKCGLLSTVENQINGKVIPATHTTPDQVVLNSLLNDMVNQGC 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSH + QHR++G++   G FTNL  DH+DYH+T   Y  AK   F+  LPK +
Sbjct: 174 DYCFMEVSSHAVAQHRIEGLQFSGGIFTNLTHDHLDYHKTFDNYLKAKKAFFDA-LPKSA 232

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGK 298
            A+   DD           N    + +   Q K   LK +      I   Q   + ++  
Sbjct: 233 FALTNIDD----------RNGNIMLQNTRAQRKTYALKSLADYKAKILENQFGGLLLDID 282

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + +  F + G F  YN L   G    +G D   VL  L KL    GRF+++ + ++   I
Sbjct: 283 NEEVWFKMVGSFNAYNLLAVYGAARLLGQDKTKVLTSLSKLKGAEGRFDYIISPNKVIGI 342

Query: 359 YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VDYAHT ++++ +L  I  I  G  ++I + GCGGDRD+ KRPIM K+A   +D  I+T
Sbjct: 343 -VDYAHTPDAVQNVLSTIHDIRKGTEKVITIIGCGGDRDKTKRPIMAKVACQWSDKVILT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            DNPRSE PE+I  ++  G+        I   +R EAI+TA  + +  D++++AGKGHE
Sbjct: 402 SDNPRSEVPEQIIRDMEAGVDAEGKKKTISITDRHEAIKTACHLASPGDIILLAGKGHE 460


>gi|317484858|ref|ZP_07943750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
 gi|316923904|gb|EFV45098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
          Length = 482

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/489 (31%), Positives = 251/489 (51%), Gaps = 23/489 (4%)

Query: 20  IFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           ++P+   E ++     E+  DSR    G +FVA+ G+  DG  FI  A+A+GA  +V   
Sbjct: 1   MYPLSLLESRVAAQGMELCIDSRKATPGCVFVALPGSSADGSQFIADAVARGAGYVVCRP 60

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFV 133
                  SA       ++   + R+ L L A   YG    P  ++ VTGT+GK++    +
Sbjct: 61  E------SAGNCGEAEVVDCADPRQALGLLARARYGTASLPFPVVGVTGTNGKTTTTYLL 114

Query: 134 QQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             +   +G  +  +G  S       +D  +TTP  + +   L+ + + GV    +E SSH
Sbjct: 115 DHLFASAGKKTGVLGTVSYRWPGHHEDAPMTTPDCLDVHTMLADMRAAGVDMAFMEVSSH 174

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---D 249
            LDQ+R+ G+      F+NL +DH+DYH   + YF AK +LF +   K     + A   D
Sbjct: 175 ALDQNRVAGVGFGGAVFSNLTQDHLDYHHDMETYFKAKAKLFLDGDGKPFADRVMAIGTD 234

Query: 250 DAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           + +   +   A  A G  + + G  G+++  K + +     ++    EG++++F  PL G
Sbjct: 235 NPWGARLAGMAPEAIGFGLTASGASGRYLEGKVLSSTTAGLRLHARFEGREWEFTSPLVG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            +   N L    + +  G+D        E    VPGR E +  N +   ++VDYAHT ++
Sbjct: 295 NYNAENLLAVQAVALGFGLDPE-AFRCFETFCGVPGRLERI-LNPQNLDVFVDYAHTPDA 352

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +L  +R     RI+ VFGCGG+RD+ KRP+MG+    L+D+A++T DNPR E+PE I
Sbjct: 353 LINVLNALRGAGFKRIVTVFGCGGNRDRAKRPLMGEAVARLSDVAVLTSDNPRHEEPEAI 412

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+++ G+ G  E     +R  AI   +E+L+  D L++AGKGHE+   + + +   S D
Sbjct: 413 MADVMPGLSGAAEVFADPDRRRAIEKGLELLHPGDALLIAGKGHESTQQIGDVKHPFS-D 471

Query: 486 CDIIREILG 494
              +REILG
Sbjct: 472 QQTVREILG 480


>gi|324008320|gb|EGB77539.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 57-2]
          Length = 471

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 168/476 (35%), Positives = 244/476 (51%), Gaps = 24/476 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+   G+ +
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
               R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 416 VMEGRAEAVTCAVIQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida GB-1]
 gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1]
          Length = 496

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 167/484 (34%), Positives = 248/484 (51%), Gaps = 40/484 (8%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    AY  
Sbjct: 9   LFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAV----AYEE 64

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135
           Q  +    +  P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q  
Sbjct: 65  QGATVLPLTEVPLIPVKGLIAQLSDVAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124

Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             + QR GL    IG   T      Q  RLTTP PI +   L  L  QG   V++E SSH
Sbjct: 125 DLLGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSH 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L+Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DDA+
Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDAF 238

Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLF 304
            + +           +   R+LS   +     L  ++     +  + TI     +     
Sbjct: 239 GRRLAADFARRPSVDHIDTRLLSYSLENPDASLFCREAAFSDDGVRATIVTAQGERILRS 298

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            L G F + N  + A +   + +D AL  +L+   +LH   GR + +G   +   + VDY
Sbjct: 299 QLLGRFNLSN--MLAAVATLLALDYALDEILKVTPQLHGPVGRMQRLGGGDKP-LVVVDY 355

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+
Sbjct: 356 AHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRT 415

Query: 423 EDPEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP++I  +I    PGF           R EAI   I      DV+V+AGKGHE    + 
Sbjct: 416 EDPQRIFDDI---RPGFARPVSVEFVAGRGEAIAQLIASAAANDVIVLAGKGHEDYQEI- 471

Query: 477 NGEK 480
           NGE+
Sbjct: 472 NGER 475


>gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
 gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
          Length = 508

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 166/497 (33%), Positives = 250/497 (50%), Gaps = 22/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL++L+ K     +  LS F P    E+ +  ++++S   Q G +F+ + G + DG  F
Sbjct: 1   MKLKELLAK-----VADLSEFKPHPAFEKDVKGLATNSHACQTGDLFIGMPGTRVDGGDF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENI 117
            P AIA GA A +VS   + +    +  S     V+   N     +  A+  YG   + +
Sbjct: 56  WPSAIANGAVAALVSQQAAEKTPQTSTESPELPCVIPSVNMTTACAQVAAAFYGYPAQQL 115

Query: 118 LAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKAL 174
             V  T       +   ++ + + S   +   G   T    +Q     TTP  + L + L
Sbjct: 116 KLVGVTGTNGKTTTTHLIEYLLECSDKPTVLFGTLYTRWLGSQITAAYTTPFAVELQQKL 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +     G  +  +E SSH L Q R+         FTNL +DH+DYHQT + YF AK  LF
Sbjct: 176 AEAVKAGCQYGVMEVSSHALHQGRVLECPFDVAVFTNLTQDHLDYHQTMEDYFEAKALLF 235

Query: 235 EELLPK--ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               P+  +  AII ADD+Y K +++R         S+      +   ++    N  +  
Sbjct: 236 S---PQYLQGRAIINADDSYGKRLIERLEADRVWSYSINDSTADLWAAQLSYEPNGVKGV 292

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     +  F  PL G++ + N L A G  +++G+D A ++  L +   VPGR E V  +
Sbjct: 293 LHTPQGEAAFELPLVGQYNLSNLLAAIGAGLSLGLDLATMMAKLPEFLGVPGRMERVQIS 352

Query: 353 SRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           S+    + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DLAD
Sbjct: 353 SQQDVSVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLAD 412

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + +VT DNPR+EDP +I  +I+ GI   I+     +R  AI+ AI      D +++AGKG
Sbjct: 413 VVVVTSDNPRTEDPNRILEDILAGIDLEIKPIVMCDRAHAIQRAIAEAKPGDGVLIAGKG 472

Query: 469 HETVHIVTNGEKKMSVD 485
           HE   I+  G +K+  D
Sbjct: 473 HEDYQIL--GTEKVHFD 487


>gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
 gi|167017296|sp|A4XQR9|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
          Length = 487

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 254/479 (53%), Gaps = 27/479 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL   P       I E++ DSR ++ G +F+A+ G ++DG + I  A+A+GA A
Sbjct: 1   MPMPLNQL--LPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAVARGAAA 58

Query: 71  IVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           +   +     + +A + + + +LV V      LS  A R YG+     +++ VTGT+GK+
Sbjct: 59  VAFEA-----EGAAPMHAESAVLVPVKGLAGQLSAIAGRFYGEPSRALHLIGVTGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV+  + Q     G     +G   T      +  + TTP P+ +   L+ L   G   V+
Sbjct: 114 SVSQLLAQALDLLGERCGIVGTLGTGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVA 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGLDQ R+  ++     FTNL RDH+DYH + +AY  AK +LF    P     +I
Sbjct: 174 MEVSSHGLDQGRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFA--WPNLRCRVI 231

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFP 305
             DDA+ +E+ ++AH++     S+     F++  +     H  +   ++  G+       
Sbjct: 232 NLDDAFGRELAQQAHDSRLIGYSLSDASAFLYCSEAQFDDHGVRARLVTPRGEGV-LRSN 290

Query: 306 LPGEFQVYN--ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           L G F + N  A+V A L +  G+D   +L+ L +L    GR + +G   +   + VDYA
Sbjct: 291 LLGRFNLSNLLAVVGALLGMDYGLDE--ILKVLPQLQGPAGRMQRLGGGDKP-LVVVDYA 347

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M  +A  LAD+  VTDDNPRSE
Sbjct: 348 HTPDALEKVLEAMRPHVQGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRSE 407

Query: 424 DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DP +I A+I  G        FI    R +AI   I      DVLV+AGKGHE    +T 
Sbjct: 408 DPAQIVADIRAGFCAPEQVQFIH--GRGDAIARLIAQAEAADVLVLAGKGHEDYQEITG 464


>gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
 gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
          Length = 487

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 234/468 (50%), Gaps = 19/468 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+A+    
Sbjct: 1   MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK---- 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 55  GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCCIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A G  + +G     +L  L +L    GR + +G   +   + VDYAHT +
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    
Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAA 411

Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I A+I  G        F+   +R EAI   I      DV+++AGKGHE
Sbjct: 412 IIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457


>gi|293392864|ref|ZP_06637182.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
 gi|291424723|gb|EFE97934.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
          Length = 471

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 169/477 (35%), Positives = 243/477 (50%), Gaps = 26/477 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +     D         P++ +
Sbjct: 4   DSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P   L + G +G +   +  Q + Q S L    +G T+ +  
Sbjct: 64  SQLNQRLSALAGRFY-LQPAERLRLVGVTGTNGKTTTTQLLAQWSQL----LGETAAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L+  G T  ++E SSHGL Q+R+  +   A 
Sbjct: 119 TVGNGLLGQVCPSENTTGSAVDVQHVLNDLAEHGATFAAMEVSSHGLVQNRVAALPFAAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  AK  LF     +   AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMASYEAAKWSLFAG--HEVGQAIINADDDVGQRWLAQLPDAVAVT 236

Query: 268 ----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L  G +G+++    V    N   V  S    D +    L G F V N L+A    +
Sbjct: 237 MQGNLQPGCRGRWLKATDVNYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L   R    G+
Sbjct: 297 SLGYPLAALLKSGSQLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALAAARLHCQGQ 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG--F 439
           +  VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPR+E+P+ I A+I+ G+  PG   
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLDPGRAL 415

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +  G R EA+ +A+    +QDV++VAGKGHE   +V N     S D   +  +LG+I
Sbjct: 416 VIHG-RAEAVTSAVMQAKQQDVVLVAGKGHEDYQLVGNRRLDYS-DRTTVARLLGVI 470


>gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
 gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
          Length = 471

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 162/479 (33%), Positives = 236/479 (49%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  A+V  +     D S       P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +  + LS  A + Y + P   L + G +G +   +  Q + Q + +    +G TS +  
Sbjct: 64  RDLNQHLSNLAGQFY-QQPGAALRLVGVTGTNGKTTTTQLLAQWAQM----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A 
Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVEQGATFAAMEVSSHGLIQNRVAALPFAAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    
Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDDVGRRWLGQLPQAVAVS 236

Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +      G+ G ++   +V    N   +              L G F V N LVA    +
Sbjct: 237 MEENVPAGWNGPWLSATQVQYHDNGASIVFDSSWGAGQLESRLMGAFNVSNLLVALSTLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G+
Sbjct: 297 SLGYPLAELLASAPNLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+   ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412

Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      R EA+ +AI      DV+++AGKGHE   +V N     S    + R +LG++
Sbjct: 413 HAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVV 470


>gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
 gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
          Length = 494

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 237/455 (52%), Gaps = 27/455 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ + +DSR ++ G  FVA+ G       +I  AI  GA  I++ S    Q    + RS 
Sbjct: 24  IHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRAGASVILLESE---QAGECSERSG 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG----- 141
             I+ V   +  L   A R + ++P     ++ VTGT+GK+SV  ++ Q+ Q +G     
Sbjct: 81  ALIVPVPELKVRLGKLADRFF-EYPSQRLQLVGVTGTNGKTSVTQYIAQLLQAAGTPCGV 139

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L +   G   T+    Q    TTP  +   + L+ + + G    ++E SSH LDQ R+D 
Sbjct: 140 LGTLGYGMPETL----QPATHTTPDVVQANRVLAGILASGGRAAAMEVSSHALDQGRIDR 195

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKR 259
           + L A  FTNL RDH+DYH +  AY  AK +LF  EEL       +I  DD + +++  +
Sbjct: 196 LTLTAAVFTNLTRDHLDYHGSMAAYGEAKAKLFSREEL----RFVVINVDDPFGRKLYHQ 251

Query: 260 AHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                 R+  S+      + LK+ CA+ N  +  +     +F    PL G F   N L A
Sbjct: 252 LEGKCDRLRFSLHEPQAELWLKEFCALDNGFRAVLDGRWGEFTIEAPLMGRFNASNVLAA 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +A+G+D   V   + +L    GR + V T   G R  VDYAHT ++L   L  +R 
Sbjct: 312 VATVMALGVDVTQVQHGVRRLVPPAGRLQ-VFTAGDGARAVVDYAHTPDALNNALAALRP 370

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
             SGR+I VFGCGGDRD GKRP M + A + AD+ IVTDDNPR+E P  I A+I+ G   
Sbjct: 371 HVSGRLICVFGCGGDRDSGKRPEMAQQAENGADLVIVTDDNPRTETPSAITADIMAGFIA 430

Query: 437 PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           P  I+   +R +AI  A+ +    D+++VAGKGHE
Sbjct: 431 PEKIQLIHSRAQAIAAALALAGPDDLVLVAGKGHE 465


>gi|296101248|ref|YP_003611394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055707|gb|ADF60445.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 495

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 238/469 (50%), Gaps = 29/469 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E+  DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI+  +     D     
Sbjct: 19  ERALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y + P + L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLSQLNERLSALAGRFYNE-PSDQLRLVGVTGTNGKTTTTQLMAQWAQL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G T  +     +  L        TT S + +   ++ L+ QG T  ++E SSHGL QHR
Sbjct: 134 LGETGAVMGTVGNGLLGKVSPTENTTGSAVDVQHVIAGLAGQGATFAAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +K  A  FTNL RDH+DYH   + Y  AK  LF         AII ADD   +  + 
Sbjct: 194 VAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLFS--THHYGQAIINADDEVGRRWLA 251

Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A    +    +    G+++   +V    +   +  +    + +    L G F V N
Sbjct: 252 KLPDAVAVSMEDHINPNCHGRWLKAVEVNYHDSGATIRFASSWGEGEIESRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A    +A+G   A +L   E+L  V GR E      +   + VDYAHT ++LE  L+
Sbjct: 312 LLLALATLLALGYPMAELLNTAERLQPVCGRMEVFSAPGKP-TVVVDYAHTPDALEKALE 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R   +G++  VFGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+P  I  +I  
Sbjct: 371 AARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDI-- 428

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            + G ++ G       R EA+  AI    + DV+++AGKGHE   IV N
Sbjct: 429 -LAGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGN 476


>gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
 gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
          Length = 489

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 233/463 (50%), Gaps = 21/463 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S+DSR +Q G +F+ + G + DG  F PQAIA GA  +V+S      + +  + + 
Sbjct: 25  IAGLSTDSRQVQPGDLFIGLPGTRVDGSEFWPQAIAGGAAGLVIS------ENARGVEAA 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146
            P++ V +     +  AS  Y   P   L + G +G +   +    ++ + Q    +   
Sbjct: 79  VPVIRVPDVVGTCARLASAYY-DFPARKLTLAGVTGTNGKTTTTHLIENLLQAQAPTGLV 137

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               S     +Q+ R TTP  + + K L+ +   G  +  +E SSH L Q R+ G +  A
Sbjct: 138 GTLYSRWPGQSQEARHTTPFALEIQKLLAQMVEAGCQYGVMEVSSHALAQQRVAGCRFEA 197

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+D+H   ++YF AK  LF     +   A+I ADD +      R   A  +
Sbjct: 198 AVFTNLTQDHLDFHPDMESYFQAKATLFSPEY-RSGRAVINADDPWGV----RLAAAYDQ 252

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V +  +Q G  I+ +         + T+        F  PL G+F + N L A G  +A+
Sbjct: 253 VWTYSFQPGADIYPEDAVFTPEGIRGTLVTPVGRAAFTSPLVGQFNLANLLAAVGATLAL 312

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GID   +   L     VPGR E V  +     + VDYAHT + L  +L+  R    GR+I
Sbjct: 313 GIDLEAIAAGLSGFGGVPGRMERVSGSDDDIAVIVDYAHTPDGLRKLLEATRPFVRGRLI 372

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-- 443
            VFGCGGDRD+ KRP MG+IA +L+D+ +VT DNPR+E+PE I  +I+ GIP  +     
Sbjct: 373 CVFGCGGDRDRTKRPQMGRIAAELSDLPVVTSDNPRTENPEAILDDILAGIPVGVSPTVE 432

Query: 444 -NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +R  AI  A+      D +V+AGKGHE   I+  G  K+  D
Sbjct: 433 VDRRRAILQALLEAKAGDCVVIAGKGHEDYQIL--GTTKIHFD 473


>gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
 gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 487

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 234/468 (50%), Gaps = 19/468 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+A+    
Sbjct: 1   MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK---- 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 55  GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A G  + +G     +L  L +L    GR + +G   +   + VDYAHT +
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    
Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAA 411

Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I A+I  G        F+   +R EAI   I      DV+++AGKGHE
Sbjct: 412 IIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457


>gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 500

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 178/480 (37%), Positives = 255/480 (53%), Gaps = 53/480 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I  ++ DSR ++ G++FVAI G + DGH FI +A+A+GA A+V     +L+       
Sbjct: 22  RPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIAEAVARGAAAVVGERPLALE------- 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSS 144
              P + V ++R  L L AS  YG HP   L + G +G +   +    ++ + +  G  +
Sbjct: 75  -GVPYVQVPSSRLALGLLASAFYG-HPSASLVMVGVTGTNGKTTTTHLIRWVLEAGGHPT 132

Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   + I+  +     TTP    L K L+ +  +G+TH  +E SSH L   R+ G  
Sbjct: 133 GLIGTVHNIIAGRSLPVERTTPEAADLQKLLAAMRDEGMTHAVMEVSSHALALQRVAGCA 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---------AIIYADDAYSK 254
              G FTNL +DH+D+H + + Y  AK RLF  L   E P         A+I ADD + +
Sbjct: 193 FDVGVFTNLTQDHLDFHASMEDYAAAKARLFSRLGRNEIPGTTKPGPKAAVINADDPWGE 252

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--------- 305
            +  R++     V++ G       L +   I   +QV +   G  F  + P         
Sbjct: 253 FMAARSN---APVVTYG-------LNRPADI-TARQVEVEPGGIRFILVSPKGEAPVRLR 301

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYA 363
           L G F VYNAL AAG  +A+G+D A V   LE L  VPGR E +    RG    + VDYA
Sbjct: 302 LTGRFNVYNALAAAGAGLALGLDPATVARGLESLQAVPGRLERI---DRGQPFAVIVDYA 358

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           HT + L+ +L+++R +   GR+I VFGCGGDRD+GKRP MG I+  LAD  ++T DNPRS
Sbjct: 359 HTPDGLDNVLRSVRELAGQGRVICVFGCGGDRDRGKRPQMGAISARLADYTVLTSDNPRS 418

Query: 423 EDPEKIRAEIIHG---IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           EDPE I  +I  G   +PG  +    +R  AIR A+E+    DV+V+AGKGHE   I  +
Sbjct: 419 EDPEAILDDIEAGVRRVPGAAYERVTDRAAAIRRALELARPGDVVVIAGKGHEDYQIFAD 478


>gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
 gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
          Length = 509

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 165/492 (33%), Positives = 255/492 (51%), Gaps = 18/492 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL++L+ K     ++ +S+    Q  E +I  ++++S   Q G +F+ + G + DG  F
Sbjct: 11  MKLRELLAK-----VSSISLTNNYQALETEIKGLATNSHACQTGDLFLGMPGTRVDGGDF 65

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENIL 118
              AIA GA   +VS + + +  +   ++   I V D ++    + A+   Y      ++
Sbjct: 66  WKSAIANGAVGAIVSVSAATKHPA---KNECVIPVADMSQTCPEIAAAFYDYPGQKMKMV 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ I   + L +   G        F +    TT  P+ L   L+  
Sbjct: 123 GITGTNGKTTTTHLVEFILNNAQLPTALFGTLYMRWPGFQKTAAYTTSFPVELQNQLAQA 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  +  +E SSH LDQ R+ G       FTNL +DH+DYH+    YF AK RLF   
Sbjct: 183 LAAGSKYGIMEVSSHSLDQKRVWGCTYEVAVFTNLTQDHLDYHKDMDDYFEAKARLFSSD 242

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   AI+ ADD Y ++++ R  +      S       +    +       +  +    
Sbjct: 243 YLK-GRAIVNADDPYGQKLIARLESEKVWSYSTSDTSTDLWASDLEYKPTGVKGMLHTPK 301

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGG 356
            +  F  PL G++ + N L A G  + +G+D ++V+  L     VPGR E V  T  +  
Sbjct: 302 GEMIFSLPLVGQYNLSNMLAAVGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDV 361

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA +L+D+A+V+
Sbjct: 362 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELSDLAVVS 421

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDPE+I  +I+ GI   ++     +R EAIRTAI      D +++AGKGHE   
Sbjct: 422 SDNPRTEDPERILQDILEGISPEVKPLVISDRAEAIRTAIMEAQSGDGVLIAGKGHEDYQ 481

Query: 474 IVTNGEKKMSVD 485
           I+  G +K+  D
Sbjct: 482 IL--GTEKIHFD 491


>gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 492

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 243/483 (50%), Gaps = 50/483 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D   +  G +F+A+ G+ E G   +  A+A+GA A++V         SA   +    + V
Sbjct: 31  DVGRVTPGSLFIAVPGHGEGGPGSVGPALARGAAAVLVDGGAPDLPMSA---AGVCAVSV 87

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            +TR   ++ ASR +G      +++A+TGT+GK+SV+  V+ + + S      +G   T 
Sbjct: 88  PDTRTAAAVVASRYFGAPGRQMDMVAITGTNGKTSVSYMVESVLRLS--EGATVGVIGTA 145

Query: 154 SSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            S   D         LTTP    L   L  +  +G   V +EA+S  L  HR+D   +  
Sbjct: 146 GSRIGDEPILMPRSVLTTPESPDLQYLLGCMRDRGAGSVVLEATSMALLTHRVDCAFIDV 205

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL +DH+D H T + Y +AK+RLF+ L  +   A++ ADD            AG +
Sbjct: 206 GVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR---AVVNADDPV---------GAGIQ 253

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISV---------EGKDFDFLFPLPGEFQVYNALV 317
            +  G    +  L    A +   ++T+           +G+ +    P+PG + V NAL 
Sbjct: 254 AMMPGAVTTY-GLDTEAADYRATELTVDASGTRFVLHHDGRKYPAAIPVPGRYSVANALA 312

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
               C A+G D   ++  L+++  VPGRFE   T  RG  + VDYAH+ +SL+ +L  IR
Sbjct: 313 TVAACHALGHDLGGLVAALDRMPPVPGRFERFRT-PRGTSVIVDYAHSPDSLDKVLTTIR 371

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               GR+I VFGCGGDRD  KR  MG+IA   +D+ I+T DNPR+EDPE I  +I    P
Sbjct: 372 GFAPGRVITVFGCGGDRDTTKRAEMGEIAGTHSDLCILTSDNPRNEDPEAILDQI---TP 428

Query: 438 GFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDII 489
           G    G       +R  AI  A+      D++++AGKG E   IV  GEK +   D   +
Sbjct: 429 GLTATGTPFERFTDRRRAIAFALSAAGPDDIVLIAGKGSEPHQIV--GEKLLPFSDMATV 486

Query: 490 REI 492
           RE+
Sbjct: 487 REL 489


>gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAb1]
 gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 487

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 234/468 (50%), Gaps = 19/468 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+A+    
Sbjct: 1   MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK---- 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 55  GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A G  + +G     +L  L +L    GR + +G   +   + VDYAHT +
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    
Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAA 411

Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I A+I  G        F+   +R EAI   I      DV+++AGKGHE
Sbjct: 412 IIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457


>gi|75907370|ref|YP_321666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
 gi|123610271|sp|Q3ME15|MURE_ANAVT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|75701095|gb|ABA20771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
          Length = 496

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 169/497 (34%), Positives = 247/497 (49%), Gaps = 28/497 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       ++ +   P    + ++  + ++S    AG +F+ + G + DG  F 
Sbjct: 1   MKLRELLAT-----VDSVENLPPVLADTEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-----ILVVDNTRKFLSLFASRLYGKHPE 115
           P AIA GA A +VS           +  N P     ++  +N  K  +  A+  YG   +
Sbjct: 56  PSAIASGAIAAIVSPQ--------AVEKNPPSDEAVVISSNNMTKACAAIAAAFYGYPGQ 107

Query: 116 NILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
            +  V  T       +   ++    ++ LS+  +G   T    F Q    TTP  + L +
Sbjct: 108 KLKLVGVTGTNGKTTTTHLIEFFLTKAQLSTALMGTLYTRWPGFEQTATHTTPFAVELQQ 167

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+   + G     +E SSH L Q R+ G     G F+NL +DH+DYH   + YF AK  
Sbjct: 168 QLAQAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKAL 227

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF     K   AII ADD Y + ++K          SV      + +  +    N    T
Sbjct: 228 LFSPDYLKGR-AIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGT 286

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I     D  F  PL G++ + N L + G  + +G+D  L+   + +   VPGR E V  N
Sbjct: 287 IHTPEGDVSFRSPLVGQYNLENLLASVGAVLHLGLDLQLIANAIPEFPGVPGRMERVQIN 346

Query: 353 -SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA +LAD
Sbjct: 347 PDQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELAD 406

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +A VT DNPR+EDPEKI  +I+ GIP  ++    G+R  AIRTAI      D +++AGKG
Sbjct: 407 LAFVTSDNPRTEDPEKILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKG 466

Query: 469 HETVHIVTNGEKKMSVD 485
           HE   I+  G +K+  D
Sbjct: 467 HEDYQIL--GTEKIHFD 481


>gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
 gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
          Length = 511

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 253/493 (51%), Gaps = 19/493 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+  + P  I+ L   P    ER +  +S++S   Q G IF+ + G + DG  F 
Sbjct: 16  MKLHDLL-NNVPS-ISSLPNHPA--LERDVKGISTNSHSCQPGDIFIGMPGTRVDGGEFW 71

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117
             A+  GA A ++S   + + F  T   +  +++VD+     +  A+  Y  +P    N+
Sbjct: 72  QSAMEVGATAAMISPQ-AAEKFPPT--DDHCVMIVDDLITVAAEVAAAFY-HYPAQQLNM 127

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++    +    +  IG   T    F Q    TTP    L + L+ 
Sbjct: 128 IGVTGTNGKTTTTHLIEYFLSQCQKPTALIGTLYTRWPGFQQTAVHTTPFAPELQEQLAE 187

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S    +  +E SSH L Q R+         FTNL +DH+D+H+  + YF AK  LF  
Sbjct: 188 AVSANNEYCVMEVSSHALAQGRVKQCPFKVSVFTNLTQDHLDFHKDMEDYFAAKQLLFTP 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +E  AII  DD Y K +++          SVG      + + +    N    T+   
Sbjct: 248 DYLQEK-AIINLDDPYGKRLIESLKPEQVWSYSVGDTQADFYTRDLTYRGNGVTGTLHTP 306

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +F  PL G+F + N L A    + +G+D   ++E L     VPGR E V  N +  
Sbjct: 307 LGTVNFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFLGVPGRMERVQINDKQD 366

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE  LK  R    G++I VFGCGGDRD+ KRP+MG+ + +LAD+++V
Sbjct: 367 ITVIVDYAHTPDSLENSLKAARPFIQGQLICVFGCGGDRDRTKRPLMGQASAELADVSVV 426

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +I+ GIP  +E     +R EAI+TAI      D +++AGKGHE  
Sbjct: 427 TSDNPRTEDPQRILEDILTGIPETVEPFVISDRAEAIKTAILQAKPGDGVLIAGKGHEDY 486

Query: 473 HIVTNGEKKMSVD 485
            I+  G +K+  D
Sbjct: 487 QIL--GTEKIHFD 497


>gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 496

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 167/489 (34%), Positives = 244/489 (49%), Gaps = 36/489 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR +  G +F A+ G + DGH F  +A  +GA A+V             +  
Sbjct: 21  EITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAIAVVAERPVECAPARLLLAP 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +    +      F    A RL       + AVTGT+GK++V +++ + C R+  ++  +G
Sbjct: 81  SARRAMALAAASFHGRPAERL------RMAAVTGTNGKTTV-TYLVEACARA--AAVPVG 131

Query: 149 PTSTIS-SFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TIS  F   +R    TTP    +   L+ + + G     +E SSH L Q R+ GI+ 
Sbjct: 132 VLGTISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEVSSHALAQERVAGIRF 191

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH+   AYF AK RLF E L     A+I A D +   +  +    G
Sbjct: 192 QAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL-GPG 250

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            RV   G + G  +   +V         T            PL G+  + N L AAGL +
Sbjct: 251 PRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAGLAL 310

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+    V   L   H  PGR E +  + RG  ++VDYAHT ++L  ++  +R ++  R
Sbjct: 311 GLGLPPEAVARGLAASHGAPGRLERI--DGRGLSVFVDYAHTDDALARMIAALRGLSPRR 368

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           +I VFGCGGDRD+GKRP+MG  A   AD+AIVT DNPR+EDP  I A+++ G+       
Sbjct: 369 LICVFGCGGDRDRGKRPLMGAAAA-AADLAIVTSDNPRTEDPLAIIADVLPGLDRAGKPS 427

Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                      G++ + +R  AI  A+E   + D ++VAGKGHE    V   EK+   D 
Sbjct: 428 LGAARARAGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKGHEDYQQV-GAEKRPFSDR 486

Query: 487 DIIREILGL 495
           D  R+ LG+
Sbjct: 487 DEARKALGI 495


>gi|62178690|ref|YP_215107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75484869|sp|Q57TD5|MURE_SALCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62126323|gb|AAX64026.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713143|gb|EFZ04714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 495

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 165/462 (35%), Positives = 240/462 (51%), Gaps = 21/462 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ ++   + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLNQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA- 256

Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             V   G+      G+++  + V        +  +    D +    L G F V N L+A 
Sbjct: 257 VAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLAL 316

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R  
Sbjct: 317 ATLLALGYPLTNLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLH 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   + G 
Sbjct: 376 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 432

Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 433 LDAGQVRVMEGRTEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. PCC 7002]
 gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp.
           PCC 7002]
          Length = 499

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 160/485 (32%), Positives = 246/485 (50%), Gaps = 30/485 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  L+  PM   ++ +  ++S+S+ +  G +F+ + G + DG  F  Q   +      V 
Sbjct: 14  IESLADHPM--LQQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFW-QGAIEAGAIAAVV 70

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVAS 131
           S  +L+ F AT +    I V D       +  + L+ + P     ++ VTGT+GK++ + 
Sbjct: 71  SPEALEKFPAT-KGECVIPVADPVIACAEI--ANLFYEKPTASLKLVGVTGTNGKTTTSH 127

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            ++   Q +   +  IG   T    + +    TTP  I L K  +     G TH  +E S
Sbjct: 128 LIEYFLQAAQQPTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAALEAGNTHAVMEVS 187

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH L Q+R+ G +     FTNL +DH+DYH T + YF AK  LF E       A++  D+
Sbjct: 188 SHALHQNRVKGCQFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEEY-CHGRAVVNLDN 246

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLF 304
            Y   +   AH  G +      Q     L     I+        VEG+        +F  
Sbjct: 247 PYGDRL---AHKLGEKAWGYSLQDAAADLYMDRLIYT----ATGVEGRLKTPMGTVEFTS 299

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYA 363
           PL G+F + N + A G  +A+G+D   ++  L +   VPGR E  +    +   + VDYA
Sbjct: 300 PLVGQFNLENVMAAIGAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDISVIVDYA 359

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +SLE +LK  R   + ++I VFGCGGDRD+ KRP+MGKIA   +D A+VT DNPR+E
Sbjct: 360 HTPDSLENLLKASRPFIAKKMICVFGCGGDRDRTKRPLMGKIAATQSDWAVVTSDNPRTE 419

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP++I A+++ GIP    F+ + +R  AI+ AI      D +++AGKGHE   I+  G +
Sbjct: 420 DPKQILADVVEGIPENIQFLVEADRATAIQRAILEAQPGDGVLIAGKGHEDYQIL--GTE 477

Query: 481 KMSVD 485
           K+  D
Sbjct: 478 KIHFD 482


>gi|311280935|ref|YP_003943166.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
 gi|308750130|gb|ADO49882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
          Length = 495

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 239/469 (50%), Gaps = 29/469 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +G +FVA++G++ DG  +IPQAIAQG  AI+  +     D     
Sbjct: 19  ERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y   P   L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLSQLNERLSALAGRFY-HQPSGRLRLVGVTGTNGKTTTTQLLAQWAQL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   LS L+ QG T  ++E SSHGL QHR
Sbjct: 134 LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLSGLAGQGATLAAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  ++  A  FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + 
Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIINADDEVGRRWLA 251

Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A    +    +    G+++    V    +   +  +    + +    L G F V N
Sbjct: 252 KLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFASSWGNGEIDSRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A    +A+G   A +L    +L  V GR E      +   + VDYAHT ++LE  L+
Sbjct: 312 LLLALATLLALGYPLAGLLSTAARLQPVCGRMEVFAAPGKP-TVVVDYAHTPDALEKALQ 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R   +G++  VFGCGGDRD+GKRP+MG IA + AD+ +VTDDNPR+E+P  I  +I  
Sbjct: 371 AARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVVVTDDNPRTEEPRAIITDI-- 428

Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            + G ++ G+      R EA+  AI    + DV++VAGKGHE   IV N
Sbjct: 429 -LAGMLDAGHAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
 gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
          Length = 483

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 170/463 (36%), Positives = 233/463 (50%), Gaps = 45/463 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--SATIR 87
           I  + +DSR IQ G +FVA  G+  DG LFI    A+   A  V+  Y   +F     + 
Sbjct: 20  ITGMQNDSRLIQPGDLFVAYPGSAADGRLFI----AKAVSAGAVAVVYEPANFPIDGVLP 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           ++ P + V +    L+  A   Y   PEN   I  +TGT+GK+++A  + Q     G  +
Sbjct: 76  TSIPCIAVPDLATKLAYIAKAFYDD-PENSLTITGITGTNGKTTIAYQLAQAHHLLGQGA 134

Query: 145 FQIGP--TSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             IG      ++     DN  TTP  + L K L     QG+  V +E SSH L QHR+D 
Sbjct: 135 AYIGTIGQGNVNELQPLDN--TTPDSLRLQKLLHQYKEQGLKQVCMEVSSHALAQHRVDA 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKR 259
           +      FTNL  DH+DYH   + Y  AK  LF  E L      AII  DD Y ++VM  
Sbjct: 193 LTFKQAIFTNLTLDHLDYHHNMENYAAAKAILFSGESL----QWAIINQDDEY-QQVMAA 247

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEF 310
           A     + L+ G       L++ C +       + + G + D   P           G F
Sbjct: 248 ALKPHVKKLTYG-------LREDCDV-KAVNWRMDINGTEIDVHSPWGQHHLRIKALGAF 299

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +YN+L      +A G     V+  + +L   PGR E V +      + VDYAHT ++LE
Sbjct: 300 NIYNSLAVFSSLLASGYAPEKVVAVMSQLKAAPGRLEIVAS---APYVLVDYAHTPDALE 356

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +  I  GR+ VVFGCGGDRD+ KRP+MGKIA   AD  I+T DNPR+EDP+ I  
Sbjct: 357 NALVTLGQIKKGRLWVVFGCGGDRDKSKRPMMGKIASLNADKIIITSDNPRTEDPQTIIE 416

Query: 431 EIIHGI-PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           EIIHGI P    ++  NR EAI  A+E  N  D++++AGKGHE
Sbjct: 417 EIIHGITPAAHVMQFVNREEAIAYALENANIDDIILIAGKGHE 459


>gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
 gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
          Length = 491

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 247/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +    +   GV    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFLKMVEHGVDSTVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DDA + E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    V++ +++L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVV----DGGQNYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNP
Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+P  I  +++ G  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466


>gi|300702957|ref|YP_003744559.1| UDP-N-acetylmuramoylalanyl-d-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070620|emb|CBJ41915.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 514

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 237/486 (48%), Gaps = 34/486 (6%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA ++GN   + DG   IPQAI  GA A++  +   +    A +R
Sbjct: 32  DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               +L VD   +     A++ Y   G     ++ VTGT+GK+S + ++ Q   R G   
Sbjct: 92  ----VLPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +G   T  + +       TTP  I L ++L  L   G   V++E SSHGL+Q R DG 
Sbjct: 148 AVVGTLGTGFVDTLVATG-FTTPDAIQLQRSLVDLHRAGARAVAMEVSSHGLEQGRADGT 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +     FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    ++     
Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLT-GLR 263

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313
           A    +  G  G+    +          V     G  FD            P+ G F V 
Sbjct: 264 ADIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDIDGSFGRATVHSPMVGLFNVS 323

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L   G+ +  G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L
Sbjct: 324 NQLGVLGVLLMAGVSWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP++I  
Sbjct: 383 CALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILD 442

Query: 431 EIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            I  G+      ++  +R  AI  A+   +  DV+VVAGKGHE+    T G K+   D +
Sbjct: 443 MIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQ-ETAGRKRPFSDQE 501

Query: 488 IIREIL 493
            +R  L
Sbjct: 502 HVRLAL 507


>gi|300981122|ref|ZP_07175368.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|301048477|ref|ZP_07195502.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300299663|gb|EFJ56048.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300409024|gb|EFJ92562.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|315294720|gb|EFU54063.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 153-1]
          Length = 471

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 167/476 (35%), Positives = 243/476 (51%), Gaps = 24/476 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q S L    +G  S +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGEPSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +    +    G+++    V    +   +  S    D +    L G F V N L+A    +
Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441
           +  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+   G+ +
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
               R EA+  A+    + DV++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 416 VMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470


>gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
 gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
          Length = 486

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 250/487 (51%), Gaps = 39/487 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I+++  DSR +  G +FVAI G + DGH F+      GA+A +V +          I
Sbjct: 21  EIEISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKDVTENGAKAAIVET------LPEVI 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
                 + V N+   L + AS  Y  +P +   ++ VTGT+GK++V + + ++ ++ G  
Sbjct: 75  AEGVTYIKVANSATALGVVASNFY-HNPSSKLKLVGVTGTNGKTTVCTLLYKLFKKLG-- 131

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            + +G  ST+ ++  D  +    TTP  I L + L+ +   G  +  +E SSH + QHR+
Sbjct: 132 -YNVGLVSTVENYINDLVVPATHTTPDQIALNQLLNRMVDAGCEYCFMEVSSHSVVQHRI 190

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK- 258
           DG++   G FTN+  DH+D+H+T   Y  AK   F+ L  K + A+   DD     +++ 
Sbjct: 191 DGLEFAGGVFTNITHDHLDFHKTFDNYIKAKKGFFDNLTSK-AFALTNVDDRNGNVMLQN 249

Query: 259 -RAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            RAH     + +V  ++ K I       +H      + ++G   +  F L G F  YN L
Sbjct: 250 TRAHKKTYALNAVADFKAKIIE-NLFSGLH------LDIDG--MEVYFRLVGSFNAYNLL 300

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +  D   VL  L  L    GRF+++   ++   I VDYAHT ++L  IL  I
Sbjct: 301 AVYGTALLLEQDRTKVLTVLSMLTGAEGRFDYIIAPNKVIGI-VDYAHTPDALRNILSTI 359

Query: 377 RTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             I+SG   II V GCGGDRD+ KRPIM + A D +   I+T DNPR+E PE I  +++ 
Sbjct: 360 ENISSGTESIITVVGCGGDRDREKRPIMAQTACDWSHKVILTSDNPRTEKPEDILNDMLA 419

Query: 435 GIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+    +K      +R EAI+ A  +    D++++AGKGHE    + NG +    D  I+
Sbjct: 420 GVSAVNQKKVLTILDRREAIKAACHLAKPGDIILLAGKGHEKYQEI-NGVRTDFDDKQIL 478

Query: 490 REILGLI 496
            E   L+
Sbjct: 479 TEQFNLL 485


>gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 504

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 243/489 (49%), Gaps = 36/489 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR +  G +F A+ G + DGH F  +A  +GA A+V             +  
Sbjct: 29  EITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPVECAPARLLLAP 88

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +    +      F    A RL       + AVTGT+GK++V +++ + C R+  ++  +G
Sbjct: 89  SARRAMALAAASFCGRPAERL------RMAAVTGTNGKTTV-TYLVEACARA--AAVPVG 139

Query: 149 PTSTIS-SFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TIS  F    R    TTP    +   L+ +   G     +E SSH L Q R+ GI+ 
Sbjct: 140 VLGTISFRFPGAERPASHTTPESTAIQAVLAEMVEAGARDAVMEVSSHALAQERVAGIRF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH+  +AYF AK RLF E L     A+I A D +   +  +    G
Sbjct: 200 QAAGFTNLTRDHLDYHRDMEAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL-GPG 258

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            RV   G + G  +   +V         T            PL G+  + N L AAGL +
Sbjct: 259 PRVWRYGGRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAGLAL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+    V   L   H  PGR E +  + RG  ++VDYAHT ++L  ++  +R ++  R
Sbjct: 319 GLGLPPEAVARGLAASHGAPGRLERI--DGRGLSVFVDYAHTDDALARMIAALRGLSPRR 376

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           ++ VFGCGGDRD+GKRP+MG  A   AD+AIVT DNPR+EDP  I A+++ G+       
Sbjct: 377 LVCVFGCGGDRDRGKRPLMGAAAA-AADLAIVTSDNPRTEDPLAIIADVLPGLDRAGKPA 435

Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                      G++ + +R  AI  A+E   + D ++VAGKGHE    V   E++   D 
Sbjct: 436 IGAARARAGEDGYVVEPDRRAAIALAVECAREGDAVLVAGKGHEDYQQV-GAERRPFSDR 494

Query: 487 DIIREILGL 495
           D  R+ LG+
Sbjct: 495 DEARKALGI 503


>gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
          Length = 486

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 148/477 (31%), Positives = 250/477 (52%), Gaps = 36/477 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G +FVAI G   DG  F+PQA+ +GA  IV      ++  SA + S+   
Sbjct: 24  VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEK--EVETGSAELISHP-- 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT 150
               + R+ L   A   +      I  V  T       +   ++Q+   +G+   ++G  
Sbjct: 80  ----SPREALGELAMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGM---KVGVL 132

Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T+S     + Q+  LTTP    L + L+ +   GV    +E SSH L Q+R+ G+K  A
Sbjct: 133 GTVSYRWPGYEQEAPLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNRVCGLKFDA 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+ +DH+DYH   + YF AK  LF+         II  DD + + +++      C 
Sbjct: 193 AVITNVTQDHLDYHGDMEEYFKAKCMLFQHYPSALKRGIINFDDPFGRRLLE------CY 246

Query: 267 VLSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             ++GY          K +  + V    +  ++ ++ +G+ ++    L G+F   N L A
Sbjct: 247 SPAIGYGMDASCATGCKSLCGEMVSCTGDGMRLKMTCDGEQWEIETDLIGKFNGSNLLAA 306

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + + +G+ +   +   ++   VPGR E V  N +G  I+VDYAHT ++L+ +L+ ++ 
Sbjct: 307 QAIGLHMGL-TPKQMNVFKEFDGVPGRLERV-RNDQGLNIFVDYAHTPDALDNVLRTLKD 364

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +   ++I VFGCGGDRD+ KRP+M + A   +D+A++T DNPR+EDP +I  +   G+ G
Sbjct: 365 LDFNKVITVFGCGGDRDRAKRPLMAEAACRYSDVAVLTSDNPRTEDPMQIIDDARPGLKG 424

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               IE+ +R +AIR A+  + + DVL++AGKGHET  I+   ++  S   ++++ I
Sbjct: 425 CDHVIEEVDRADAIRKAVAEMTEDDVLLIAGKGHETYQIIGTEKRDFSDSEEVLKAI 481


>gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
 gi|15988380|pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
          Length = 498

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 168/487 (34%), Positives = 246/487 (50%), Gaps = 30/487 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E + DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 19  RALREXTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREX 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q S L    +
Sbjct: 79  HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 133

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  S +     +  L        TT S + +   L+ L  QG T  + E SSHGL QHR+
Sbjct: 134 GEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAXEVSSHGLVQHRV 193

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  A   L+ E    +  AII ADD   +  + +
Sbjct: 194 AALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSEHHCGQ--AIINADDEVGRRWLAK 251

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        ++    G+++   +V    +   +  S    D +    L G F V N 
Sbjct: 252 LPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLXGAFNVSNL 311

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 312 LLALATLLALGYPLADLLKTAARLQPVCGRXE-VFTAPGKPTVVVDYAHTPDALEKALQA 370

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+ G IA + AD+A+VTDDNPR+E+P  I  +I   
Sbjct: 371 ARLHCAGKLWCVFGCGGDRDKGKRPLXGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 427

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N     S    + 
Sbjct: 428 LAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 487

Query: 490 REILGLI 496
           R +LG+I
Sbjct: 488 R-LLGVI 493


>gi|269137990|ref|YP_003294690.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|267983650|gb|ACY83479.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|304558037|gb|ADM40701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda FL6-60]
          Length = 469

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 243/483 (50%), Gaps = 38/483 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG+  DG  FIPQAIAQG  A++  +    +D S       P++ +
Sbjct: 2   DSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVYL 61

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +  + LS  A R YG+ P   L + G +G +   +  Q + Q + L    +G T  +  
Sbjct: 62  SHLNERLSALAGRFYGQ-PGADLRLVGVTGTNGKTTTTQLLAQWAQL----LGETGAVMG 116

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L  L+  G T V++E SSHGL Q+R+  +   A 
Sbjct: 117 TVGNGLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAAS 176

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL RDH+DYH   + Y  AK RLF      E   II ADD   +  + +  +A    
Sbjct: 177 AFTNLSRDHLDYHGDMEHYAQAKWRLFSTHHSGEK--IINADDETGRRWLDKLPDAVAVT 234

Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LPGEFQVYNAL 316
           +S     G+ G+++  + V   ++    TI+     FD  +        L GEF V N L
Sbjct: 235 VSGALPAGWAGRWLAARSVA--YHDGGATIA-----FDSCWGAGTLNSRLMGEFNVSNLL 287

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA    +A+G   A +     +L  V GR E      +   + VDYAHT ++LE  L   
Sbjct: 288 VALATLLALGYPLAALCAASGQLQPVCGRMEVFQAPGKP-TVVVDYAHTPDALEKALLAA 346

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    G +  +FGCGGDRD GKRP+MG IA   AD  +VTDDNPRSE+P  I  EI+ G+
Sbjct: 347 RLHCQGLLWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGM 406

Query: 437 --PGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             PG  +    R EA+  A+     QDV++VAGKGHE   +V N     S    + R +L
Sbjct: 407 LDPGLAMAIPGRAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDYSDRVTVAR-LL 465

Query: 494 GLI 496
           G++
Sbjct: 466 GVV 468


>gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 487

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 237/463 (51%), Gaps = 41/463 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+++++++SDSR    G +FVA+ G   DGH +IPQA  QG  A VV      +D     
Sbjct: 20  EQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQGCRAFVV------EDLPDEK 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143
                 + V +T + L+  AS  YG HP     ++ VTGT+GK++VA+ + ++ ++ G  
Sbjct: 74  PEGCCFVQVSDTAEALASLASAYYG-HPSRHLTLVGVTGTNGKTTVATLLYRLFRKMG-- 130

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            ++ G  ST+ ++  D       TTP P+ L      ++  G  +  +E SSH   Q R+
Sbjct: 131 -YKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVSSHAAAQKRI 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G FTNL RDH+DYH +   Y  AK   F+  L  ++ A++ ADD   K  +  
Sbjct: 190 GALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDG-LGAQAFALVNADD---KNGLVM 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYN 314
             N   RV +   +    +  K+   H        ++G D      +    L G+F  YN
Sbjct: 246 VQNTRARVCTYALKSMANYRAKIVERH--------IDGMDMYMDDREVFVRLVGDFNAYN 297

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L   G    +G D   VL  L +L  V GRF+   T+  G    VDYAHT ++L  +L 
Sbjct: 298 LLCVYGASCELGQDREEVLRILSELTSVDGRFQTF-TSKDGYVAIVDYAHTPDALVNVLD 356

Query: 375 NIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            IR +  S ++I V G GG+RD+GKRPIM K A   ++  I+T DNPR E+P++I  E+ 
Sbjct: 357 TIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILTSDNPRDEEPQEIIQEMA 416

Query: 434 HGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            G+     K      +R EAIRTA  +  K D +++AGKGHET
Sbjct: 417 IGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459


>gi|330813728|ref|YP_004357967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486823|gb|AEA81228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 464

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 152/457 (33%), Positives = 238/457 (52%), Gaps = 25/457 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNK--EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           N  S+D+R ++   IF  + G+K  +DG  F      +    I  +   +L        S
Sbjct: 11  NNCSADTRTLRKSEIFFDL-GSKSNKDGDYFFKALKKKPLFIITQNQKRNL--------S 61

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               ++V N   F     S  + K P+  +AVTGT+GK+SVA F  +I    G+   ++G
Sbjct: 62  GKNFIIVKNIYSFYVKSISLKFKKKPKYKIAVTGTNGKTSVAFFYYKILNLLGI---KVG 118

Query: 149 PTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              T+  F    +    LTTP      K L++   + + H  +EASSHGL Q+RL+ I  
Sbjct: 119 SIGTLGVFENTKKSKGNLTTPDFFSNHKNLNHFYKKRINHSIIEASSHGLKQNRLEKINF 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FTNL  DH+DYH+T + Y N+K+ LF++L+ K    +  ++      + K + N  
Sbjct: 179 DCGIFTNLTHDHLDYHRTMKDYLNSKLILFKKLIKKNGFLVTGSEVLEFSLLNKISKNKK 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +LS G +G  I +  + +  N Q  ++ I++ GK       L G FQ+ N L A   C
Sbjct: 239 LNLLSYGRKGNIIKI--ISSKPNGQFTKLKINILGKVHTLKLKLIGNFQIENFLAATLAC 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            + GI    +     ++   PGR +     ++   + +DYAHT ++LE  +  I+   + 
Sbjct: 297 YSSGISFEKIFRICSRIDNPPGRLQLFKKQNKT--VIIDYAHTPDALEKTIIEIQKFFNK 354

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           +I +VFGCGGDRD  KR  MGKIA  L +   +TDDNPR E+  KIR +I  G P  I  
Sbjct: 355 KINIVFGCGGDRDHQKRKAMGKIAYKLCNKIYITDDNPRYENARKIRMQIKAGCPNAIVV 414

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            +R +AI+++I MLN +++L++AGKGHE   ++ N +
Sbjct: 415 PSRKQAIKSSISMLN-EEILLIAGKGHEEFQLIKNKK 450


>gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 509

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 165/484 (34%), Positives = 245/484 (50%), Gaps = 23/484 (4%)

Query: 24  QWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +WR +R+   V+ DSR    G +FVA+ G   DG  F+ QA+  G EA V+  A +L   
Sbjct: 27  EWRPQRERCAVTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEA-VLCEAEALP-- 83

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141
           ++       +L V   R  L      ++       ++ VTGT+GKSSV  ++  + +  G
Sbjct: 84  TSVPEQEARVLAVPGLRGQLGELGRHVFAVPASLELIGVTGTNGKSSVTHYLAALSEALG 143

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  IG          +  RLTTP P+ L  AL  LS++GV  V++E SSH L+Q R+ 
Sbjct: 144 TPAAVIGTLGVGRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSHALEQGRVT 203

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G +  A  +TNL RDH+DYH +  AY  AK RLF+    + + A++  DD  S  +M   
Sbjct: 204 GCRFHAAVYTNLSRDHLDYHGSMAAYAAAKARLFQHR--ELALAVVNGDDRLSP-LMLAG 260

Query: 261 HNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              G RVL+ G Q    + +         Q+  I+    + +    L G F + N L+A 
Sbjct: 261 LAKGVRVLATGTQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFNLDNVLLAI 320

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTS----NSLEMILK 374
                +G +   +     +L  VPGR +  V  N+    + VDYAHT     N+LE +  
Sbjct: 321 ATLYGMGAELNALFSAAARLAPVPGRMQRLVAENAP--TVVVDYAHTPDALRNALEALRA 378

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           ++ +    ++  VFGCGGDRD+GKRP+M + A  LAD  +++DDNPR E    IR EI  
Sbjct: 379 HLPSSDGAKLWCVFGCGGDRDRGKRPLMAQAAEALADRLVISDDNPRGEPAAAIRDEIAA 438

Query: 435 GIP--GFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+   G       G R EAI   ++   + D++++AGKGHET   +  GE+    D DI 
Sbjct: 439 GLSTDGRARAECMGGRREAIEWTLDAAGEHDIVLIAGKGHETYQEIA-GERHPFSDIDIA 497

Query: 490 REIL 493
           RE L
Sbjct: 498 REAL 501


>gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
 gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
          Length = 485

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 154/482 (31%), Positives = 249/482 (51%), Gaps = 39/482 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N +  DSR ++ G++FVA+ G + DGH +I +AI  GA  IV       +     I S
Sbjct: 22  EVNGIHMDSRMVKNGFMFVAVKGTQADGHNYISKAIENGATVIVC------EQLPVQIES 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N   + + +T + +   A+  YG     +  + VTGT+GK+++A+ +  + +   L  ++
Sbjct: 76  NVTYVQLTDTEEAVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFR---LFGYK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ ++     +    TTP PI L + L  ++ +G  +V +E SSH + Q R+ G+
Sbjct: 133 AGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYVFMEVSSHSVVQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G FTN+ RDH+DYH+T + Y  AK   F+  LPK++ A+   DD  +  VM +   
Sbjct: 193 TFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDN-LPKQAFALTNLDDK-NGTVMTQNTQ 250

Query: 263 AGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A     S+     ++GK +         +   + + +  ++ +  F   G F   N L  
Sbjct: 251 AKVAAYSLHSLCDFKGKVLE-------DSFDGMLLDINNREVNVQF--IGRFNASNLLAV 301

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G    +G     +L  L  L  V GRF+    + +G    VDYAHT ++L  +L+ I  
Sbjct: 302 YGAACLLGKRPEDILVKLSMLRPVSGRFD-AKRSPKGYTAIVDYAHTPDALVNVLEAIHE 360

Query: 379 ITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +  GR  +I V G GG+RD+GKRP+M K +   +D  I+T DNPR E+P+ I  +++ G+
Sbjct: 361 VLRGRGQVITVVGAGGNRDKGKRPLMAKESAQRSDKVIITSDNPRFEEPQDIINDMLAGL 420

Query: 437 P-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   I   +R EAIRTA  +   QDV+++AGKGHET   V  G K    D +++ E
Sbjct: 421 SKDDMKKVISIVDRKEAIRTACMLAQPQDVILIAGKGHETYQDV-KGVKSHFDDKEVLDE 479

Query: 492 IL 493
           I 
Sbjct: 480 IF 481


>gi|254515246|ref|ZP_05127307.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
 gi|219677489|gb|EED33854.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
          Length = 491

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 242/461 (52%), Gaps = 34/461 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F+A+ G+ +DG  F+ QA A GA A +V     L+       S  P++V+
Sbjct: 34  DSRQVEKGDLFIALRGHAQDGREFLAQAAASGAAAALVEDELPLR------LSPLPMVVI 87

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
            N R  L   A R + + P    +I AVTGT+GK++V+    ++ +  G     IG   +
Sbjct: 88  PNLRHRLCEIAGRFF-REPSREMHIAAVTGTNGKTTVSQLFARLVRSVGYDCGVIGTLGA 146

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           ++      +  TTP  I L + L+  + Q V  VS+E SSH L Q R++ + +    FTN
Sbjct: 147 SLDGGVHSSVHTTPDSIALQEILAGWAGQAVPFVSMEVSSHALHQGRVNTLDIDTAIFTN 206

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH   Q+Y  AK RLF         AI+ ADD +S+ + +R    G  VL  G
Sbjct: 207 LTRDHLDYHGDMQSYGEAKARLFA--FESLRTAILNADDPFSRHLAQRVPT-GVSVLRYG 263

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYNALVAAGLC 322
            +     ++          + +S  G  F F           PL G+F   N L A    
Sbjct: 264 IEDSTAEVRL-------SHLKLSRAGLRFRFESPWGEATLTCPLLGKFNAVNLLAALTAA 316

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +  G+    V+E +E L  VPGR E +     G  + +DYAHT ++L  +L  +R    G
Sbjct: 317 LQAGLPFKAVMEAVESLASVPGRMEPLRVAG-GPLVVIDYAHTPDALRQVLLTLREQCQG 375

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIE 441
            +I VFGCGGDRD+GKRP+M +     AD A++T DNPRSE+P  I A+I   + G ++ 
Sbjct: 376 SLIAVFGCGGDRDRGKRPLMAEAVSATADRAVITSDNPRSEEPLAIIADIQASMKGDYLV 435

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             +R EAIR AIE    +D +++AGKGHE   IV  G++++
Sbjct: 436 CADRAEAIRLAIESAGAKDCVLIAGKGHEDYQIV--GQERL 474


>gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 552

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 162/503 (32%), Positives = 250/503 (49%), Gaps = 66/503 (13%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSAT 85
           R+++ V++DSR      +FVA+ G + DGH +I  A+A+G   I+      +  Q  +  
Sbjct: 25  REVSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVARGCRLILTQRGRRVDQQKLAGL 84

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                  L   +TR+ L    + L G HP     ++ +TGT+GK++ A  ++ +    G 
Sbjct: 85  AGEAVLCLSTPDTREALGWLCAALQG-HPARSLLLIGITGTNGKTTCAYLLEALIASGG- 142

Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              Q G   T++   +   +    TTP P  L   L+ +   GVTHV +E SSH L Q R
Sbjct: 143 --GQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAGVTHVVMEVSSHALVQRR 200

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257
           + G++     FTNL R+H+DYH   ++YF AK RLFE+ L P  +  +  A+ A + +  
Sbjct: 201 VAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQHLKPGAAAVVCAAELAVAADSQ 260

Query: 258 KRAHN-AGC----------------------------RVLSVGYQGKFIHLKKVCAIHNK 288
           KRA + AGC                            R+   G+    + L    +  N 
Sbjct: 261 KRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAPRLWRCGFASGELRLLSQRSGLNG 320

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE- 347
            +  ++    +++   PL G+F + N L  A   +A+ +    +   L      PGR E 
Sbjct: 321 IKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLALEMSPEAIAAALAVAPPPPGRLER 380

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV  + RG +++VDYAHT  +LE +L+ +R   S R+IV+FGCGGDRD+GKR  MG+IA 
Sbjct: 381 FV--DRRGMKVFVDYAHTPAALEQVLRTLRP-HSRRLIVIFGCGGDRDRGKRGPMGEIAG 437

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEML------ 456
            LADI ++T DNPR+E+P  I A I  G+ G   +  R+EA+     R   ++L      
Sbjct: 438 RLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCRLEALLAGTGRRGYDLLVSRRRA 497

Query: 457 --------NKQDVLVVAGKGHET 471
                   +  DV+V+ GKGHET
Sbjct: 498 IAETIFFADAGDVIVLCGKGHET 520


>gi|121998875|ref|YP_001003662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
 gi|121590280|gb|ABM62860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
          Length = 503

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 238/458 (51%), Gaps = 27/458 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD------- 81
            I  ++ D+R ++ G +F+A+ G+++ G  ++P A+  GA A+V    +  QD       
Sbjct: 27  SIQGLTPDTRRLEPGAVFLALPGSRDHGLAYVPAALQAGAAAVV----WDPQDEVDPGAA 82

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139
            +AT +S  P++ V   R+ L   A RLYG       ++AVTGT GK+SV+ F+ Q+   
Sbjct: 83  RTATEQSGVPMVGVPGLRRHLGAIAGRLYGDPSRGMEVIAVTGTDGKTSVSHFIAQLL-- 140

Query: 140 SGLSSFQIGPTSTIS-SFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           SG  +   G   T+      D R   LTTP    L KAL+   + G T V++EASSH L+
Sbjct: 141 SGPEA-PWGVVGTLGHGLVDDLRPGVLTTPDAAALQKALAECRAAGATGVAMEASSHALE 199

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q RL G  +     T+LGRDH+DYH + +AY +AK RLFE   P     ++  DDA  + 
Sbjct: 200 QGRLAGTAVDLAVLTHLGRDHLDYHGSVEAYADAKSRLFE--FPSLRAQVLNLDDALGRR 257

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  RA  A     S       +  + V    +  Q+T+ V G       PL G F V N 
Sbjct: 258 LHDRAAGAAF-TYSAAGAAADLAAEAVIPGADGVQLTLCVGGTRHSVRLPLFGHFNVANV 316

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILK 374
           L A    +A+G     VL  L  L  VPGR E F    S    + VDYAHT  +LE  L 
Sbjct: 317 LAAVAAALALGRPMDGVLARLPTLRPVPGRMEQFHADGSP--LVVVDYAHTPGALEQALT 374

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PEKIRAEII 433
            +R  T+GR+ VVFGCGG+RD GKRP+MG++A  LAD  ++TDDNPR ED      A   
Sbjct: 375 ALRAHTTGRLCVVFGCGGERDTGKRPLMGEVAARLADRVLITDDNPRGEDAAVIRAAVAA 434

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               G      R  AI  AI      DV+++AGKGHET
Sbjct: 435 GAGEGAEVVAGRGVAIGGAIAWGAPGDVVLIAGKGHET 472


>gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
 gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
          Length = 522

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 167/481 (34%), Positives = 239/481 (49%), Gaps = 36/481 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR +  G  FVAI G   DGH FI  A+  GA  +V  +           R  
Sbjct: 62  IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCEA------LPTRARER 115

Query: 90  TPILV---VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG--- 141
            P +V   V +TR  L+  A+ L+G   + +  + VTGT+GK++VA  V  + +  G   
Sbjct: 116 FPGVVFARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVAYLVHHLLEALGETA 175

Query: 142 --LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             LS+ ++      ++ A    LTTP P+ L + L  +  +G T  ++E SSH LDQ R+
Sbjct: 176 GLLSTIKVQAGGETTALA----LTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRV 231

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G+      FT L  DH+DYH T   Y  AK  LF+ L P ++ A+  ADD     ++  
Sbjct: 232 HGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGP-DATALYNADDEAGPTMVA- 289

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             +   RV+S G  +   I    + A  + Q+V +    +D      L G F   N   A
Sbjct: 290 --DTEARVVSFGLDRDADIEATVLEARLDGQRVRLDGHERDTQ----LAGRFNASNMAAA 343

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G   A+G     V + L     VPGR E +     G  + VDYAHT ++LE +L+ +R 
Sbjct: 344 YGTGTALGHAPEAVADALADAPPVPGRVEPLRFGD-GTTVIVDYAHTPDALENVLRTVRD 402

Query: 379 ITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            T  +  +  VFGCGGDRD GKRP MG+IA  LAD  IVT DNPR+E P  I  +I  G+
Sbjct: 403 TTPAKAALWCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDICDGV 462

Query: 437 --PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             P  +    +R EAI+ A +     DV+V+AGKGHET   +    +    D ++ R   
Sbjct: 463 ERPESMRWIVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGTDTRPFD-DREVARRYF 521

Query: 494 G 494
           G
Sbjct: 522 G 522


>gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
          Length = 487

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 248/484 (51%), Gaps = 57/484 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +SR +    +FVAI G+  DGH +I  AI QGA A+V       +    T++     +VV
Sbjct: 30  NSRSVAVNDLFVAIKGSVVDGHDYIENAIKQGAIAVVC------EYLPKTLKEGISYIVV 83

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +++   L++ AS  YG    N+  + VTGT+GK+++AS + Q+ +++G   +++G  ST+
Sbjct: 84  EDSSIALAIMASNYYGNPSSNLKLVGVTGTNGKTTIASLLFQLFKKAG---YKVGLLSTV 140

Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                DN+      TTP  + + + LS ++++GV    +E SSHG+ Q R  G+    G 
Sbjct: 141 V-IKVDNKDYKATHTTPDSLTINRYLSEMNNEGVEFCFMEVSSHGIHQKRTQGLDFAGGI 199

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS------------KEV 256
           FTNL  DH+DYH+T   Y + K   F+  L   + A+  ADD               K  
Sbjct: 200 FTNLSHDHLDYHETFAEYRDVKKSFFDN-LSSSAFALTNADDKNGAIMLQNTKAKQYKYG 258

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   N   ++L   + G  + +                   D D    L G F   N L
Sbjct: 259 LKNYANYKAQILENSFSGMLLKI------------------NDSDVWTRLIGGFNASNVL 300

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                   +G++   +L  + +L  V GRF+++ +      I VDYAHT ++L+ +L+ I
Sbjct: 301 AIYATAELLGLEKTEILRLISELESVSGRFQYLISEENITAI-VDYAHTPDALKNVLETI 359

Query: 377 RTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +I +    +I V GCGGDRD  KRP MG IA  L+  AI T DNPR+E PE I  +I  
Sbjct: 360 NSIRTKNEELITVIGCGGDRDATKRPKMGHIASALSTKAIFTSDNPRTEVPELIIEDIEK 419

Query: 435 GI-PGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+ P   +K     +R +AI+TA ++ N  D++++AGKGHET   + NGE+    D  I+
Sbjct: 420 GVEPQNFKKTLSIVDRKQAIKTACQLANAGDIILIAGKGHETYQEI-NGERTDFDDFKIV 478

Query: 490 REIL 493
           + +L
Sbjct: 479 KNLL 482


>gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 488

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 238/470 (50%), Gaps = 25/470 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G +F A+ G   DG  FI +A   GA  +V        D       + P++ +
Sbjct: 24  DSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKG----DIGP---CSVPVIEI 76

Query: 96  DNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-T 152
           DN  + L   A+  YG     ++  AVTGT+GK++ A+++  +  R G     IG    T
Sbjct: 77  DNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCT 136

Query: 153 ISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           ++     +  +TTP P+ L    + L S+G    ++EASS GL+Q RLDG ++    FTN
Sbjct: 137 LNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTN 196

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV- 270
           L RDH+DYH T + Y  AK  LF    P  + A+I      ++++MK A  AG  +L+V 
Sbjct: 197 LTRDHLDYHGTMENYLRAKEILFR--WPTVASAVINQSGEPAQQIMKTAEGAGKAILTVS 254

Query: 271 --GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G Q  ++  + +       +  +  +G  F       G F V N L   G  I++G +
Sbjct: 255 AKGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFE 314

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRII 385
              VL+ + KL    GR + V  +  G    VDY+HT +++   +K +  +     GRI 
Sbjct: 315 IETVLKEVAKLMPPAGRMQIV-RDDHGPIFAVDYSHTPDAVTQAIKALEGLAEARGGRIW 373

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443
           +V G GGDRD GKRP+MG+ A   AD  ++T DNPRSED ++I  +I  G   P  + + 
Sbjct: 374 IVVGAGGDRDHGKRPLMGQAAC-AADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE- 431

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R +AI  A E     DV++VAGKGHE    V  G K    D +  RE L
Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKGHEDYQEV-KGVKHHFSDVEETREAL 480


>gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
 gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
          Length = 487

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 19/468 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +N L   P    +  I E++ DSR ++ G +F+A+ G + DG       +      
Sbjct: 1   MPMPLNHL--LPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGR----DHVQDAIAR 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
              + AY  +     +     ++ V +    LS  A R YG+   N+  + VTGT+GK+S
Sbjct: 55  GAAAVAYESEGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  + Q   R G     IG   T      +  R TTP  I +   L+ L  +G   V++
Sbjct: 115 VSQLIAQALDRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  ++     FTNL RDH+DYH T +AY  AK RLF   +P  S  +I 
Sbjct: 175 EVSSHGLDQGRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFG--VPGLSCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +      +     S+     +++  +     +     +     +     PL 
Sbjct: 233 LDDGFGRALAGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A G  + +      +L  L +L    GR + +G   R   + VDYAHT +
Sbjct: 293 GRFNVSNVLAAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRP-LVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L  +R    GR++ +FGCGGDRD GKRP+M ++A  LAD  +VTDDNPR+E PE+
Sbjct: 352 ALEKVLTALRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPER 411

Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I  ++  G        F++   R +AI   I   N  DV+V+AGKGHE
Sbjct: 412 ILEDVRSGFVNPEAVTFVQ--GRAQAIARLIAAANASDVVVLAGKGHE 457


>gi|267991801|gb|ACY86686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
          Length = 495

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 172/470 (36%), Positives = 243/470 (51%), Gaps = 37/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QGVT  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGVTFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311
              ++V  +G   H+   C  H +     +VE    G    F            L G F 
Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I   + G ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|94501901|ref|ZP_01308411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
 gi|94425954|gb|EAT10952.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
          Length = 490

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 238/472 (50%), Gaps = 23/472 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + +N +  DSR ++ G   + +     D   +I QA+ + A  ++    YS  ++     
Sbjct: 25  QTLNRIVFDSRDVEDGDALIVLPSVAGDEAAYIEQALEKRAVLVIGEIEYSAHNYCR--- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  V +   F +   +   G   +  +++ VTGT+GKSS+  +V Q+      S  
Sbjct: 82  -------VSDVMTFAASVLNHELGSPSQHMDVIGVTGTNGKSSIVFYVAQLLTELRHSCA 134

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS--QGVTHVSVEASSHGLDQHRLDGIK 203
            +G       F  D + T  + + L +    L+   +    +++E SSHGL Q RL G+ 
Sbjct: 135 VMGTLGY--GFWNDLKPTGMTTLPLPRLHQALADVKKDCKAIAMEVSSHGLHQKRLSGVA 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH T  AYF+AK  LF+E  P    A+I  DD Y K+++      
Sbjct: 193 FNGAIFTNLSRDHLDYHGTMDAYFDAKRLLFKE--PGLQWAVINQDDDYGKKLLSEP--V 248

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                S G   K  +H          QQ+ +   G++ +   PL GEF  YNA  +    
Sbjct: 249 SYSSYSYGTDEKSDLHFCITRTTDTGQQLALRFHGQEQEVFLPLLGEFNAYNAAASVLSV 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           IA+G D +   + +  L  V GR E + +N     + VDYAHT +++E +LK+ R    G
Sbjct: 309 IAMGFDFSSACKAVTALRPVSGRMELIDSNDSQPNVLVDYAHTPDAVEQVLKSARKHCKG 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-E 441
            ++ + GCGGDRD+GKRP+M + A++ AD  ++T DNPRSE PE+I A+++ G+   +  
Sbjct: 369 NLVCLVGCGGDRDRGKRPLMAQAAINFADSVLLTSDNPRSESPEQILADMVQGLKKEVPS 428

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + +R +AI++AI      D++V+ GKGHE    + +G K    D +  RE L
Sbjct: 429 ELDRKQAIQSAILNAKSDDLIVIVGKGHEDYQEI-HGVKYPFSDQETAREAL 479


>gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
 gi|46576910|sp|Q7MWM7|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
          Length = 487

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 237/463 (51%), Gaps = 41/463 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+++++++SDSR    G +FVA+ G   DGH +IPQA  QG  A VV      +D     
Sbjct: 20  EQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQGCRAFVV------EDLPDEK 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143
                 + V +T + L+  AS  YG HP     ++ VTGT+GK++VA+ + ++ ++ G  
Sbjct: 74  PEGCCFVQVSDTAEALASLASAYYG-HPSRHLTLVGVTGTNGKTTVATLLYRLFRKMG-- 130

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            ++ G  ST+ ++  D       TTP P+ L      ++  G  +  +E SSH   Q R+
Sbjct: 131 -YKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVSSHAAAQKRI 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G FTNL RDH+DYH +   Y  AK   F+  L  ++ A++ ADD   K  +  
Sbjct: 190 GALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDG-LGAQAFALVNADD---KNGLVM 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYN 314
             N   RV +   +    +  K+   H        ++G D      +    L G+F  YN
Sbjct: 246 VQNTRARVCTYALKSMANYRAKIVERH--------IDGMDMYMDDREVFVRLVGDFNAYN 297

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L   G    +G D   VL  L +L  V GRF+   T+  G    VDYAHT ++L  +L 
Sbjct: 298 LLCVYGASCELGQDREEVLRILSELTSVDGRFQTF-TSKDGYVAIVDYAHTPDALINVLD 356

Query: 375 NIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            IR +  S ++I V G GG+RD+GKRPIM K A   ++  I+T DNPR E+P++I  E+ 
Sbjct: 357 TIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILTSDNPRDEEPQEIIQEMA 416

Query: 434 HGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            G+     K      +R EAIRTA  +  K D +++AGKGHET
Sbjct: 417 IGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459


>gi|169632242|ref|YP_001705978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii SDF]
 gi|169151034|emb|CAO99680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii]
          Length = 499

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 238/473 (50%), Gaps = 51/473 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           QW ++  +  S DSR ++ G IF+A+      E    F   A+A GA A++  +   + +
Sbjct: 16  QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133
                       V  + R+ +  +  R   +     P  I+AVTGT+GK++++  +    
Sbjct: 76  E----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELI 125

Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EAS
Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DD
Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304
           A++  ++K A N   +   + Y      L +  A +    ++ S+ G  F+ +       
Sbjct: 238 AHADLMIKSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSQQGSFA 292

Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G F V N + A       G D   ++  + KL   PGR + +  + R     VD
Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR
Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +EDPE+I A++  GI        E  +R EAI+   E     D++V+AGKGHE
Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463


>gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Azotobacter vinelandii DJ]
 gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii
           DJ]
          Length = 487

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 245/473 (51%), Gaps = 29/473 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL   P       I E++ DSR ++ G +F+A+ G ++DG   IP A+A+GA A
Sbjct: 1   MPMPLNQL--LPQAETALLIRELTLDSRQVRPGDLFLAVPGGRQDGRAHIPDALARGAAA 58

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           +   +A   S  D         P++ +      LS  A R YG+    +  + VTGT+GK
Sbjct: 59  VAYEAAGAPSFAD------GGVPLVPIKGLAGQLSAIAGRFYGEPSRALCLVGVTGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SV+  + Q     G     IG          Q  R TTP PI +  AL+ L   G   V
Sbjct: 113 TSVSQLLAQALDLLGERCGIIGTLGNGFHGALQSGRHTTPDPISVQAALAGLKQAGARAV 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSH L Q R+  +      FTNL RDH+DYH +  AY  AK RLF    P     +
Sbjct: 173 SMEVSSHALAQGRVSALDFDVAIFTNLSRDHLDYHGSMDAYGAAKARLFA--WPGLRCRV 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           +  DD + + +   A+ +     S+  +   +H ++  A  ++Q V   V     + L  
Sbjct: 231 LNLDDPFGRLLAGEANASRLIGYSLESRSAQVHCRR--AHFDEQGVRAEVATPQGEGLLH 288

Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            PL G F + N L   G  +  G+D AL  +L  + +L    GR + +G  ++   + VD
Sbjct: 289 SPLLGRFNLSNLLAVVGALL--GLDYALDEILRVVPQLQAPAGRMQRLGGGAKP-LVVVD 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M  +A  LAD  ++TDDNPR
Sbjct: 346 YAHTPDALEKVLEALRPHVRGRLLCLFGCGGDRDRGKRPLMAAVAERLADALLITDDNPR 405

Query: 422 SEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           SE PE+I A+I  GI G  EK      R +AI   I   +  DVL++AGKGHE
Sbjct: 406 SESPEQIFADIRSGI-GVPEKVTCLHGRGQAIARLIAGADASDVLLLAGKGHE 457


>gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 556

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 162/503 (32%), Positives = 250/503 (49%), Gaps = 66/503 (13%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSAT 85
           R+++ V++DSR      +FVA+ G + DGH +I  A+A+G   I+      +  Q  +  
Sbjct: 25  REVSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVARGCRLILTQRGRRVDQQKLAGL 84

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                  L   +TR+ L    + L G HP     ++ +TGT+GK++ A  ++ +    G 
Sbjct: 85  AGEAVLCLSTPDTREALGWLCAALQG-HPARSLLLIGITGTNGKTTCAYLLEALIASGG- 142

Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              Q G   T++   +   +    TTP P  L   L+ +   GVTHV +E SSH L Q R
Sbjct: 143 --GQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAGVTHVVMEVSSHALVQRR 200

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257
           + G++     FTNL R+H+DYH   ++YF AK RLFE+ L P  +  +  A+ A + +  
Sbjct: 201 VAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQHLKPGAAAVVCAAELAVAADSQ 260

Query: 258 KRAHN-AGC----------------------------RVLSVGYQGKFIHLKKVCAIHNK 288
           KRA + AGC                            R+   G+    + L    +  N 
Sbjct: 261 KRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAPRLWRCGFASGELRLLSQRSGLNG 320

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE- 347
            +  ++    +++   PL G+F + N L  A   +A+ +    +   L      PGR E 
Sbjct: 321 IKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLALEMSPEAIAAALAVAPPPPGRLER 380

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV  + RG +++VDYAHT  +LE +L+ +R   S R+IV+FGCGGDRD+GKR  MG+IA 
Sbjct: 381 FV--DRRGMKVFVDYAHTPAALEQVLRTLRP-HSRRLIVIFGCGGDRDRGKRGPMGEIAG 437

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEML------ 456
            LADI ++T DNPR+E+P  I A I  G+ G   +  R+EA+     R   ++L      
Sbjct: 438 RLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCRLEALLAGTGRRGYDLLVSRRRA 497

Query: 457 --------NKQDVLVVAGKGHET 471
                   +  DV+V+ GKGHET
Sbjct: 498 IAETIFFADAGDVIVLCGKGHET 520


>gi|184159718|ref|YP_001848057.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|332873767|ref|ZP_08441709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
 gi|183211312|gb|ACC58710.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|193078569|gb|ABO13596.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
 gi|322509631|gb|ADX05085.1| murE [Acinetobacter baumannii 1656-2]
 gi|323519649|gb|ADX94030.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737990|gb|EGJ68875.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
          Length = 499

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 238/473 (50%), Gaps = 51/473 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           QW ++  +  S DSR ++ G IF+A+      E    F   A+A GA A++  +   + +
Sbjct: 16  QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133
                       V  + R+ +  +  R   +     P  I+AVTGT+GK++++  +    
Sbjct: 76  E----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELI 125

Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EAS
Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DD
Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304
           A++  ++K A N   +   + Y      L +  A +    ++ S+ G  F+ +       
Sbjct: 238 AHADLMIKSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSQQGSFA 292

Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G F V N + A       G D   ++  + KL   PGR + +  + R     VD
Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR
Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +EDPE+I A++  GI        E  +R EAI+   E     D++V+AGKGHE
Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463


>gi|194443335|ref|YP_002039355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194401998|gb|ACF62220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 495

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 165/462 (35%), Positives = 239/462 (51%), Gaps = 21/462 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA- 256

Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             V   G+      G+++  + V        +  +    D +    L G F V N L+A 
Sbjct: 257 VAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLAL 316

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R  
Sbjct: 317 ATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLH 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   + G 
Sbjct: 376 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 432

Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 433 LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|56412395|ref|YP_149470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197361331|ref|YP_002140966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|81359648|sp|Q5PDH1|MURE_SALPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56126652|gb|AAV76158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197092806|emb|CAR58232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 495

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 172/470 (36%), Positives = 243/470 (51%), Gaps = 37/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+V +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIVEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311
              ++V  +G   H+   C  H +     +VE    G    F            L G F 
Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I   + G ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|161612467|ref|YP_001586432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168464325|ref|ZP_02698228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|198245705|ref|YP_002214075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351462|ref|YP_002225263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207855637|ref|YP_002242288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|161361831|gb|ABX65599.1| hypothetical protein SPAB_00157 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195633022|gb|EDX51476.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197940221|gb|ACH77554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271243|emb|CAR36031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206707440|emb|CAR31713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626489|gb|EGE32832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 495

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 165/462 (35%), Positives = 239/462 (51%), Gaps = 21/462 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA- 256

Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             V   G+      G+++  + V        +  +    D +    L G F V N L+A 
Sbjct: 257 VAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLAL 316

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R  
Sbjct: 317 ATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLH 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   + G 
Sbjct: 376 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 432

Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 433 LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL N1-067]
          Length = 491

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 153/484 (31%), Positives = 240/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +     ++++++ DSR +  G +F+ I G   DGH F  +A   GA A+
Sbjct: 5   ELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELGAVAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +             I    P++ V +T++ +++ A+  YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKP---------IEVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + SG  +  IG     I     + + TTP  + L +    +  +GV+   +E
Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD   +E ++        V++ G         K  A      + I+  G  FD  
Sbjct: 236 AVLNADD---EESVRMQTATAAHVITFGI--------KENADFRATNIEITSHGSTFDLT 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     +  +E +  V GRFE V    +
Sbjct: 285 TPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNA-GQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDY+HT + L  +L+ I    + R+ VV GCGGDRD+GKRP M KIA+  A   +
Sbjct: 344 DFPVIVDYSHTPDGLLNVLQTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYATNPV 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AI+ AI      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGHEN 463

Query: 472 VHIV 475
             I+
Sbjct: 464 YQII 467


>gi|169794475|ref|YP_001712268.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213158953|ref|YP_002320951.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
 gi|301345412|ref|ZP_07226153.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB056]
 gi|301510058|ref|ZP_07235295.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB058]
 gi|301596006|ref|ZP_07241014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB059]
 gi|169147402|emb|CAM85263.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213058113|gb|ACJ43015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
          Length = 499

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 238/473 (50%), Gaps = 51/473 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           QW ++  +  S DSR ++ G IF+A+      E    F   A+A GA A++  +   + +
Sbjct: 16  QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133
                       V  + R+ +  +  R   +     P  I+AVTGT+GK++++  +    
Sbjct: 76  E----------WVCSDVRQRMGDWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELI 125

Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EAS
Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DD
Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304
           A++  ++K A N   +   + Y      L +  A +    ++ S+ G  F+ +       
Sbjct: 238 AHADLMIKSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSQQGSFA 292

Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G F V N + A       G D   ++  + KL   PGR + +  + R     VD
Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR
Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +EDPE+I A++  GI        E  +R EAI+   E     D++V+AGKGHE
Sbjct: 411 TEDPEQIFADMKQGINFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463


>gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
 gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
          Length = 495

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 161/501 (32%), Positives = 255/501 (50%), Gaps = 18/501 (3%)

Query: 7   IYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           I +  P L+   + I   Q     I  +  DSR IQ G  FVA+ G+  DG  FI  A+A
Sbjct: 3   ITQGLPTLLAPWMKIDDPQLNSLTIQHLQLDSRKIQPGDTFVAVAGHAVDGRQFIADALA 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  ++  +       + +   + PI+ + +  + LS  A R Y  H   ++AVTGT+G
Sbjct: 63  RGANLVLAQADEQRPHGTVSDIDSKPIIYLASLDEHLSALAGRFYADHTNRVIAVTGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++++  + Q  +  G  +  +G T     +  Q    TT + + +   L  L+ QG  +
Sbjct: 123 KTTISQLITQWLELMGERAAVMGTTGNGFLNQLQPALNTTGNALEVQATLRQLAEQGARY 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +  IAG F+NL RDH+DYH T Q Y  AK  LF E   ++  A
Sbjct: 183 TAMEVSSHGLVQGRIKALPFIAGVFSNLSRDHLDYHGTMQEYAKAKQSLFTEHDCQQ--A 240

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIH--LKKVCAIHNKQQVTISVEGKD-- 299
           I+  DD    +    A +   R++ V  YQ       L      +++Q + ++ +G    
Sbjct: 241 ILNVDDPVGAQ---WATHQWPRLVGVSLYQQPETERCLWATSVSYSEQGIHLAFDGSWGV 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L GEF   N L++    +++G     +L+   +L  V GR E      +  ++ 
Sbjct: 298 GHLHVALIGEFNASNLLLSLATLLSLGFSKPALLDTAAQLTPVLGRMELFSVPGK-AKVV 356

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L  +R    G++ V+FGCGGDRD GKRP+M  IA   AD  I TDDN
Sbjct: 357 VDYAHTPDALEKALCALRVHCLGQLWVIFGCGGDRDTGKRPMMAAIAEQFADKIIFTDDN 416

Query: 420 PRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PRSE    I  +++ G+      +E  NR +A++ A+   N  D++++AGKGHE   ++ 
Sbjct: 417 PRSESAHAIVQDMLAGLSHRQAHVEH-NRYQALQYALAHANADDIILLAGKGHEDYQVLA 475

Query: 477 NGEKKMSVDCDIIREILGLIL 497
           +     S D +  +++LGL +
Sbjct: 476 DQTVHYS-DRESAQQLLGLTV 495


>gi|169334387|ref|ZP_02861580.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259104|gb|EDS73070.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
          Length = 481

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 155/491 (31%), Positives = 252/491 (51%), Gaps = 32/491 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+D++ + +P  +N             IN +  DSR  + G +FV IVG + DGH +I
Sbjct: 1   MKLKDIL-EGYPHSLNG----NKDIENIDINSIVFDSRKCEEGSMFVCIVGYETDGHKYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+  G + I  S    L+ +    + +   +  +NTR  L+ FA+R Y    +N+  +
Sbjct: 56  DSALKLGVKVICHSE--ELEGY----KDDITYIKCENTRNALAYFANRFYSFPSKNLKLI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            V+GT+GK+S       + +  G  +  IG     ++  +   + TTP    L K  S +
Sbjct: 110 GVSGTNGKTSFCDIAHTLFENLGFKTDYIGTLGRKNTKLEGQIIRTTPEITELTKDFSDM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V +  +E SSHGL   R+  +    G F+NL  DH+D+H+T + Y+ AK +L+  +
Sbjct: 170 VKNDVDYCFLEVSSHGLVLDRVSFLNFYIGVFSNLSMDHLDFHKTMEEYYQAKKKLYYMV 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTIS 294
              +  ++I  DD Y   +          V+S G + +    I +K++    +K   T++
Sbjct: 230 ---DRFSVINIDDDYGHRLYNELKEDKKDVISFGEKEQSDYKITIKELSL--SKSSFTLT 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                +DF+    G+F +YN   A  + +  GI    + E + + H   GR E V  +  
Sbjct: 285 KGNNKYDFVINSIGKFNIYNVTPAIIIALEEGIGYEKIKEAILRYHGTNGRIERVAED-- 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I++DYAHT +++E ILK IR ++S +I +VFGCGG+RD GKRPIMG ++   AD  I
Sbjct: 343 ---IFIDYAHTPDAMEKILKLIREVSSKKITLVFGCGGNRDHGKRPIMGSVSEKYADNII 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPR E  E I  +I++GI    +     +R EAI  A+      ++++V GKGHET
Sbjct: 400 LTMDNPRKEKNEDIIKDILNGIKNKDKTEIIYDRKEAINKAVRNKKDDEIVLVLGKGHET 459

Query: 472 VHIVTNGEKKM 482
              +  G+KK+
Sbjct: 460 YQEL--GDKKI 468


>gi|50122742|ref|YP_051909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|81643886|sp|Q6D0H8|MURE_ERWCT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49613268|emb|CAG76719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 495

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 170/480 (35%), Positives = 247/480 (51%), Gaps = 20/480 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E+  DSR   AG +FVAIVG+K DG  +IPQAIAQG  AIV  +     D +      
Sbjct: 22  LREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEADGEAADGTVREMHG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++ + +  + LS  A R Y +  E   ++ VTGT+GK++    + Q  Q  G  S  +
Sbjct: 82  VPVVYLSSLNQRLSALAGRFYQQPAEKLQLIGVTGTNGKTTTTQLLAQWSQALGEMSAVM 141

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +   A     TT S + + + LS L  QG T  ++E SSHGL Q+R+  +   A
Sbjct: 142 GTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFAAMEVSSHGLVQNRVAALPFTA 201

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH   ++Y  AK  LF E   +    II ADD      + +  +A   
Sbjct: 202 AVFTNLSRDHLDYHGDMESYEAAKWLLFAE--HRVGQMIINADDEVGLRWLAKLPDAVAV 259

Query: 267 V----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                L  G +G+++   ++    N   +         +    L G F V N L+A    
Sbjct: 260 TMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGQGEIESRLMGAFNVSNMLLALATL 319

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +++G     ++    +L  V GR E      +   + VDYAHT ++LE  L+  R    G
Sbjct: 320 LSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGKP-TVVVDYAHTPDALEKALEAARLHCQG 378

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           ++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+   ++ 
Sbjct: 379 KLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDA 435

Query: 443 G------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           G       R EA+ +AI    + DV++VAGKGHE   +V N     S    + R +LG+I
Sbjct: 436 GRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLDYSDRITVAR-LLGVI 494


>gi|308185654|ref|YP_003929785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
 gi|308056164|gb|ADO08336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
          Length = 495

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 235/467 (50%), Gaps = 27/467 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + +++ DSR   +G +FVA+ G++ DG  FIPQAIAQG  A+V  +     D      
Sbjct: 20  RPLRDMTLDSRMAASGDLFVAVAGHQVDGRRFIPQAIAQGVAAVVAEAEGEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y + P     + G +G +   +  Q + Q + L    +
Sbjct: 80  HGVPVIYLAQLHQRLSALAGRFY-QQPGEKQTLIGVTGTNGKTTTTQLLAQWATL----L 134

Query: 148 GPTSTISS----------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G TS +             A +N  TT S + +   L  L+ +G T  ++E SSHGL QH
Sbjct: 135 GETSAVMGTVGNGLVGHLVAAEN--TTGSAVDVQHMLHELAEKGATLTAMEVSSHGLVQH 192

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+  +   A  FTNL RDH+DYH    +Y +AK  LF E   +   AI+ ADD   +  +
Sbjct: 193 RVAALPFAAAVFTNLSRDHLDYHGDMPSYESAKWLLFSE--HQVGQAILNADDEVGRRWL 250

Query: 258 KRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            R  +A        L  G  G+++    V    N   +  S    + +   PL G F V 
Sbjct: 251 ARLPDAVAVTMEDNLQSGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEIDSPLMGAFNVS 310

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A    +++    A ++    +L  V GR E      +   + VDYAHT ++LE  L
Sbjct: 311 NLLLALATLLSLNYPLATLISVAPRLQPVNGRMEVFSAAGKP-TVVVDYAHTPDALEKAL 369

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R    G++  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSEDP+ I  +I+
Sbjct: 370 EAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPQAIVKDIL 429

Query: 434 HGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G+  PG       R +A+  AI      D+++VAGKGHE   I+ N
Sbjct: 430 TGLLDPGRARVVSGRAQAVTNAIMQAQPDDIVLVAGKGHEDYQIIGN 476


>gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
          Length = 499

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 163/512 (31%), Positives = 255/512 (49%), Gaps = 38/512 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DLI      L++ L     +   ++++ +++DSR    G  + A+ G   DGH FI
Sbjct: 2   MTLEDLI-----GLLDPLEYLAGRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
             A+++G   +V       ++   ++      + V + R  L+  A+  +G HP +   +
Sbjct: 57  SDALSKGVGVVVC------EEIPVSVDERCCYIRVADCRTALAAAAAEWFG-HPASSLRV 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK++ A  ++ +  RSG+ +  IG   T  +   D  +    TTP  + L   
Sbjct: 110 IGVTGTNGKTTTARLIRTMLDRSGVKTGYIG---TGQALIGDESIVLERTTPEAMDLHAL 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              + + G   V +E SSH L  HR +GI      FTNL  +H+D+H T   Y +AK  L
Sbjct: 167 FRKMVNCGCEAVVMEVSSHALVLHRTEGISFYGAVFTNLTPEHLDFHATMDEYGSAKQIL 226

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQ------GKFIHLKKVCAI 285
           F ++ P +   I+ ADDA+    M     +G R+   +VG Q      G  +  + + A 
Sbjct: 227 FRQVAP-DGFGIVNADDAWGS--MMAGAFSGSRLFCCTVGSQVFGCTNGSVVRARDIEAR 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +   VT+ + G+     F LPG F V N L      +A+G+        +  +  V GR
Sbjct: 284 MDGSSVTVQMNGRACRASFLLPGLFNVMNMLEILSAGVAMGLSLETAAASVADVVSVEGR 343

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMG 403
            E V  +       VDYAHT ++LE ++  +  +      +IVVFGCGGDRD+ KRP+MG
Sbjct: 344 MEPVSDDGGLFSAIVDYAHTPDALEKVIGALNEVRPADSSLIVVFGCGGDRDRSKRPLMG 403

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDV 461
            IA   AD  I+T DNPRSEDPE+I   I  GI    F+   +R +AI   ++ML   D+
Sbjct: 404 GIAAAGADHVILTSDNPRSEDPEEILDAIASGITEGSFMRIADRADAIVCGVQMLRPGDL 463

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           L++AGKGHE     + G K    D +++   L
Sbjct: 464 LLIAGKGHECYQ-ESGGRKSYFSDREVVARAL 494


>gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2]
          Length = 485

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 233/464 (50%), Gaps = 19/464 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+A+       +
Sbjct: 3   LNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK----GAAA 56

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+SV+  
Sbjct: 57  VAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQL 116

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++E SS
Sbjct: 117 VAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSS 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I  DD 
Sbjct: 177 HGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVINLDDD 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + + +     ++     S+     F++ ++        +  +     +     PL G F 
Sbjct: 235 FGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFN 294

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +G     +L  L +L    GR + +G   +   + VDYAHT ++LE 
Sbjct: 295 LSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPDALEK 353

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    I A+
Sbjct: 354 VLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIAD 413

Query: 432 IIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I  G        F+   +R EAI   I      DV+++AGKGHE
Sbjct: 414 IRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 455


>gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
 gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
          Length = 511

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 156/475 (32%), Positives = 237/475 (49%), Gaps = 41/475 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V  DSR    G +FVA+VG+  DGH            A   ++  +       + +
Sbjct: 23  ELTGVCCDSRQAGPGMVFVAVVGHSADGHA---------YVAAAAAAGATAAVVQRPVEA 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI-CQRSGLSSF 145
           +   +VV ++R  LS  A    G+  +   ++ VTGT+GK+++    + I  QR    + 
Sbjct: 74  DIAQIVVPDSRLALSALADEFAGRPSQRLKLVGVTGTNGKTTICHLARAIMAQR--WPTG 131

Query: 146 QIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            IG   T   FAQ  R   +TTP  + L K L+ + + GV   ++E SSH LDQHR D  
Sbjct: 132 MIGTVETC--FAQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVSSHALDQHRADHC 189

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------KESPAIIYADDAYSKEV 256
           +   G FTNL RDH+DYH     YF AK  LF ELLP      K   ++I  DD + + +
Sbjct: 190 RFDVGLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRPVSVICLDDDHGRVL 249

Query: 257 MKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A   G  +L+ G   G  +  + +    +   V I   G   +F   L G + + N 
Sbjct: 250 ADQARGTGLALLTYGLAPGADVGGRVLAGGVDGMTVRIDHPGGSLEFHSRLVGRYNLQNI 309

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + AA + +A+G+    +   LE +  VPGR + V    R   ++VDYAH+  ++   L  
Sbjct: 310 VGAAAVGLALGLSPEEIKAGLEGVAGVPGRLQRVPGPDRSPAVFVDYAHSPEAIAAALAV 369

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R + +GR+I VFG GGDRD+GKRP+MG+ A   AD  ++T DNPR+EDP  I   +  G
Sbjct: 370 LRPLCAGRLICVFGAGGDRDKGKRPLMGRAAGQAADFCVLTSDNPRTEDPMAIIDMVEAG 429

Query: 436 I----------PGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +          P   ++   +E     AI  AI+     DV+++AGKGHE   I+
Sbjct: 430 LVESEARRCDNPAAGQRAYAVEADRAAAIAMAIQAAGPADVVLIAGKGHEDYQII 484


>gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
 gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
          Length = 486

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 151/467 (32%), Positives = 229/467 (49%), Gaps = 55/467 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ +S D+R I+ G +FVA+ G K DGH F+ +A+ +GA A++   A            
Sbjct: 22  EISGISYDTRTIRPGELFVALTGYKTDGHRFLREAVKKGAAAVICHKAPE---------E 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P L+  +TR  L+  ++  +G+  + +  +  T       +         G+   ++G
Sbjct: 73  PGPWLIAADTRAALAAVSANWFGRPADELTVIGVTGTNGKTTTTYLLKAMLEGVLGAKVG 132

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              T  +   +  +    TTP    + K L  ++  G THV +E SSH L  HR+DGI  
Sbjct: 133 LMGTNQNMIGEKVIPAHRTTPESWEVQKLLRDMADSGCTHVVMEVSSHALALHRVDGIAF 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FTNL RDH+D+H T + Y   K  LF +       A++  DD   +          
Sbjct: 193 QVGIFTNLTRDHLDFHGTMEEYRRVKGLLFRQ----TGTAVLNLDDEAGR---------- 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------KDFDFL---------FPLPG 308
                  Y    +    +    NK Q  ++ +         +F+ L          P+PG
Sbjct: 239 -------YYASIVTCPALTYSENKDQADVTAKNIRLFPDRVEFEALTTGAIARVRLPIPG 291

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F +YNAL      +A+ +    V   L +   V GR E V T +    + +DYAHT ++
Sbjct: 292 GFTIYNALGVIACGLALKLPLPQVCASLAEAKGVKGRIEVVPTPTDYA-VIIDYAHTPDA 350

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE IL  +R  T GR+I +FGCGGDRD+ KRP+MG IA +LAD+ ++T DNPR+EDPE I
Sbjct: 351 LENILTTVRDFTPGRVICLFGCGGDRDRSKRPVMGAIAAELADLVVLTSDNPRTEDPEAI 410

Query: 429 RAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            A+I  G+ G     +   +R EAIR A++     D +V+AGKGHET
Sbjct: 411 LADIQAGMEGSDTPCMVVPHRREAIRRALDEAKSGDTVVLAGKGHET 457


>gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID332]
 gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
 gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 492

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 164/478 (34%), Positives = 232/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            GL  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IGLLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
 gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
          Length = 494

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 158/449 (35%), Positives = 239/449 (53%), Gaps = 13/449 (2%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN-TPILV 94
           DSR +  G  FVAI G+  DG  FI  AI  GA AI+ + A  L       RS+   I+ 
Sbjct: 33  DSRKVTQGTTFVAIKGHAVDGRRFINSAIELGANAII-AEACELHPHGKVERSSGVSIVY 91

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153
           +D   + LS  AS LY      ++ VTGT+GK+++   + Q     G  +  +G T    
Sbjct: 92  LDQLAQHLSALASLLYPLSDNKLIGVTGTNGKTTITQIMAQWLDLIGHKAAVMGTTGNGF 151

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
            +  Q    TT + I + + L  L  QG  + ++E SSHGL Q R+  +    G F+NL 
Sbjct: 152 LADLQPAANTTGNAIEIQQTLHQLQQQGAQYTALEVSSHGLVQGRVKTLPFEVGVFSNLS 211

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           RDH+DYH T + Y  AK  LF++   K   A+I  DD      +KR  +A    L+    
Sbjct: 212 RDHLDYHGTMEEYAEAKFSLFDQHTCK--TAVINIDDQVGASWVKRLDSAIAVSLNPTDH 269

Query: 274 GKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            + +  + V   +++  +++ ++G     +F   L GEF   N L+A    +A+G+D   
Sbjct: 270 PRAVWAESVS--YSEAGISLVIDGLFGRGEFTIALIGEFNASNVLLALTALLALGVDKQQ 327

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L+    L  V GR E   T S   ++ VDYAHT ++LE  LK +R    G++  +FGCG
Sbjct: 328 LLDTASSLKPVLGRMELF-TASDKAKVVVDYAHTPDALEKALKALRVHCHGKLWGIFGCG 386

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF-IEKGNRIEA 448
           GDRD GKRP+M  I  +LAD  I+TDDNPRSE P  I  +++ G+  P   I + NR +A
Sbjct: 387 GDRDTGKRPMMAAIGEELADKVILTDDNPRSESPAAIVEDMLKGMNEPELAIVEHNRFDA 446

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           ++ A+    +QD++++AGKGHE   ++ +
Sbjct: 447 LKYALAHSGEQDIILLAGKGHEDYQVMAD 475


>gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 488

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 237/470 (50%), Gaps = 25/470 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G +F A+ G   DG  FI +A   GA  +V        D       + P++ +
Sbjct: 24  DSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKG----DIGP---CSVPVIEI 76

Query: 96  DNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-T 152
           DN  + L   A+  YG     ++  AVTGT+GK++ A+++  +  R G     IG    T
Sbjct: 77  DNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCT 136

Query: 153 ISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           ++     +  +TTP P+ L    + L S+G    ++EASS GL+Q RLDG ++    FTN
Sbjct: 137 LNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTN 196

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV- 270
           L RDH+DYH T + Y  AK  LF    P  + A+I      ++++MK A  AG  +L+V 
Sbjct: 197 LTRDHLDYHGTMENYLRAKEILFR--WPTVASAVINQSGEPAQQIMKTAEGAGKAILTVS 254

Query: 271 --GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G Q  ++  + +       +  +  +G  F       G F V N L   G  I++G +
Sbjct: 255 AKGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFE 314

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRII 385
              VL+   KL    GR + V  +  G    VDY+HT +++   +K +  +     GRI 
Sbjct: 315 IETVLKEAAKLMPPAGRMQIV-RDDHGPIFAVDYSHTPDAVTQAIKALEGLAEARGGRIW 373

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443
           +V G GGDRD GKRP+MG+ A   AD  ++T DNPRSED ++I  +I  G   P  + + 
Sbjct: 374 IVVGAGGDRDHGKRPLMGQAAC-AADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE- 431

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R +AI  A E     DV++VAGKGHE    V  G K    D +  RE L
Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKGHEDYQEV-KGVKHHFSDVEETREAL 480


>gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
          Length = 488

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 240/451 (53%), Gaps = 28/451 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +FVA+ G+   G  F PQA+ +GA A+V +         AT+ S    +V 
Sbjct: 27  DSRQVEPGDVFVALPGSTVHGSDFAPQALKRGAAAVVAAPGT----LPATL-SQQNCVVH 81

Query: 96  DNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           D+ R+ L   A   +G  +    ++ VTGT+GK++V   ++   QR G    ++G   TI
Sbjct: 82  DDPREALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGR---RVGVIGTI 138

Query: 154 SS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           ++      +   LTTP    L   LS +++ GV  V +E SSH L Q R  G++  A   
Sbjct: 139 ANRWPGHEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQRRTAGLRFSAAVL 198

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
           TN+ +DH+DYH+  ++YF AK  LF    L +    +I ADD Y + +      A G  +
Sbjct: 199 TNVSQDHLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWGYSL 258

Query: 268 LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S   Q   +    V  +  K  +++   +G+ +    PL G     N + A    +A+G
Sbjct: 259 HSEKAQDPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGRHNGANLMAAQATLLALG 318

Query: 327 I---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
               D+A+    L     VPGR E V  N+ G  I+VDYAHT ++LE +L+ +  +   R
Sbjct: 319 FGPADAAV----LSDAPPVPGRLERV-ENAAGLDIFVDYAHTPDALENVLQAMTALDGNR 373

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           ++VVFGCGGDRD+ KR  MG+     AD+AI+T DNPR EDPE I A++  G+   P  +
Sbjct: 374 LLVVFGCGGDRDRTKRVPMGQAVARYADVAILTSDNPRHEDPEAIMADVRPGLADCPRVV 433

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           E+ +R  AI  A++ +   D+LVV GKGHET
Sbjct: 434 EESDRKAAIALALQEMVPGDILVVTGKGHET 464


>gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani
           ATCC 19707]
 gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
 gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
          Length = 519

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 160/486 (32%), Positives = 249/486 (51%), Gaps = 28/486 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +ER+I+ +S DSR +  G +F A  G +  GH  I  A+ QGA AIV      +   S  
Sbjct: 36  QERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGAAVDQGAAAIVYDPVIPV---SPA 92

Query: 86  IRS-----NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
           I++     N P++ + +    + + A R Y +    +  L VTGT+GK+SV+ F+ Q   
Sbjct: 93  IQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVLGVTGTNGKTSVSHFLAQALH 152

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           R G+    +G     +    Q + LTTP  + + + L+ +++  + +  +E SSH L+Q 
Sbjct: 153 RQGIPCGLVGTLGKGLVGTLQPSPLTTPDAVTVQEQLAAMAAARIRYTVLEVSSHALEQG 212

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R++G+      FTNL R+H+DYH     Y  AK RLF +  P+   A+I  DD   +  +
Sbjct: 213 RVNGVVFNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQ--PELRHAVINIDDVAGRAFL 270

Query: 258 KRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               N    V ++ Y     Q      +  C  +       S  G+       L G F  
Sbjct: 271 A---NLPSEVAAISYGITNPQANLWASELHCDRYGIAMTVQSAWGEG-QLTCSLLGRFNA 326

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L A G  + +G+     L+ L ++  V GR E  G       + VDYAHT ++LE +
Sbjct: 327 YNLLAALGGLLVVGMPFTEALQRLSQVRAVAGRMEAFGEKEGEPLLVVDYAHTPDALEQV 386

Query: 373 LKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L +++      GR+  VFGCGGDRD+GKRP+MG  A  LAD  I+TDDNPR EDP +I  
Sbjct: 387 LCSLQMHLGPGGRLWCVFGCGGDRDRGKRPLMGAAAERLADFVILTDDNPRDEDPIQIII 446

Query: 431 EIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I+ GI  P  + +  +R EAI  A ++   +D++++AGKGHE    +   ++  S D +
Sbjct: 447 DILSGIHNPDRVYQFRSRSEAIIRATQLAGPEDIVLIAGKGHEEYQQIGAEQRPFS-DRE 505

Query: 488 IIREIL 493
            ++E L
Sbjct: 506 QVQEAL 511


>gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri DSM 4166]
          Length = 487

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 226/459 (49%), Gaps = 17/459 (3%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P    +  I E++ DSR ++ G +F+A+ G + DG       +         + AY  
Sbjct: 8   LLPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGR----DHVQDAIARGAAAVAYES 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
           +     +     ++ V +    LS  A R YG+   N+  + VTGT+GK+SV+  + Q  
Sbjct: 64  EGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQAL 123

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            R G     IG   T      +  R TTP  I +   L+ L  +G   V++E SSHGLDQ
Sbjct: 124 DRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  ++     FTNL RDH+DYH T +AY  AK RLF   +P  S  +I  DD + + +
Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFG--VPGLSCRVINLDDGFGRAL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 +     S+     +++  +     +     +     +     PL G F V N L
Sbjct: 242 AGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNVL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  + +      +L  L +L    GR + +G   R   + VDYAHT ++LE +L  +
Sbjct: 302 AAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRP-LVVVDYAHTPDALEKVLTAL 360

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    GR++ +FGCGGDRD GKRP+M ++A  LAD  +VTDDNPR+E PE+I  ++  G 
Sbjct: 361 RPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILDDVRSGF 420

Query: 437 PG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                  F++   R +AI   I   N  DV+V+AGKGHE
Sbjct: 421 VNPEAVTFVQ--GRAQAIARLIAAANASDVVVLAGKGHE 457


>gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 487

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 160/501 (31%), Positives = 263/501 (52%), Gaps = 37/501 (7%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+N++S+  +       I  +  DSR  +   +F+A+ G++ DGH +I  AIA G++AI
Sbjct: 6   ELLNKVSVQQIIGDTNLPIKSICLDSREAEKDSLFIALPGSQVDGHQYIADAIALGSKAI 65

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128
           +       + +   + ++   + V N  + L   AS  Y K+P     ++AVTGTSGK+S
Sbjct: 66  IC------EKYPEHLATHVTYIQVSNVTQALGTIASNFY-KNPSTKLKLVAVTGTSGKTS 118

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTH 184
               + ++ ++ G   + +G  STI +   D    + LTTP+ I + KAL+ + + G   
Sbjct: 119 TVHLLYRLFRQLG---YSVGMLSTIHNQINDQAFPSTLTTPNAIDINKALAQMVTAGCQF 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +EASSH + Q+RL G++L    F N+  DH+DYH T  AY  AK +LF+EL    +  
Sbjct: 176 CFMEASSHAIVQNRLAGLELAGALFLNISHDHLDYHLTFDAYIQAKKKLFDEL--TANAF 233

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++Y  D    ++M +   A    +++     F    +V A +  Q + + + G+  +  F
Sbjct: 234 VLYNIDDKRGKIMIQNTRATTYSMAIQRPADFT--AQVLA-NTWQGLELRIGGQ--NVWF 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F   N L A      +G  S  +L  L  +  + GRF+ + T  +   I +DYAH
Sbjct: 289 QLLGTFNASNLLAAYATACLLGQPSQDILVALSSIKPITGRFQHIHTPKKPDVI-IDYAH 347

Query: 365 TSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              +LE IL +I+ I       G+II + GCGG+RD  KRP+M +IA  L+D  I+T DN
Sbjct: 348 KPEALEKILLSIQQIRESAKQQGKIITIIGCGGNRDTQKRPMMARIAYKLSDQLILTSDN 407

Query: 420 PRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           PR EDP+ I  E+  G+        I   +R EAI+ A +M    D++++AGKGHE    
Sbjct: 408 PRYEDPKAIIEEMKQGLRSAEQLKTITIIDRAEAIQAAYQMAQPADIILIAGKGHENYQE 467

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           +   +  +S D +I+ +++ +
Sbjct: 468 IAGIKYPLS-DEEIVSKLMAV 487


>gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
 gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
          Length = 505

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 166/488 (34%), Positives = 244/488 (50%), Gaps = 48/488 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR +  G +F A+ G K DG  F+  A+  GA AIV     +    +     
Sbjct: 22  EIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGGAVAIVADRPCACPGVT----- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
              ++VV + R  +SL A+  YG     I  V  T       +   V+ I +++G+ +  
Sbjct: 77  ---VVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTTTYLVEGIMEQAGVPAAV 133

Query: 147 IGPTSTIS-SFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TIS  F + N     TTP  + L   L  L   G     +E SSH L+QHR+DG 
Sbjct: 134 LG---TISYRFGETNIPAPNTTPESVDLQAILRELVDHGARGAVMEVSSHALEQHRVDGC 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP---AIIYADDAYSKEVM 257
                 F+NL RDH+DYH   ++YF +K+RLF +LL    E P   A++  DD +   + 
Sbjct: 191 LFDVALFSNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPLRRAVVNLDDPFGPRI- 249

Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             A  A   VL+    GK  I + +     +  +  ++    +      L G F +YN L
Sbjct: 250 --AEKAAAPVLTYSMTGKADISVAEAEFSVDGIRCRLNTPVGEISLASELLGRFNLYNIL 307

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  +A+G     +   +E    VPGR E V T   G  + VDYAHT ++LE +L  +
Sbjct: 308 SAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVETE-EGITVLVDYAHTGDALENVLSTV 366

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             + + RII +FGCGGDRD+GKRP+MG+IA   +D+A++T DNPR+EDP+ I  ++  GI
Sbjct: 367 SELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAVITSDNPRTEDPQAILEDVRAGI 426

Query: 437 --------------PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                          GF EKG     +R  AIR A+   +  D++++AGKGHE   IV  
Sbjct: 427 LPLGLREYGLEELAAGFHEKGFATIESRRAAIRAALLAAHPGDIVLLAGKGHEDYQIV-- 484

Query: 478 GEKKMSVD 485
           G +K   D
Sbjct: 485 GTEKFHFD 492


>gi|157147491|ref|YP_001454810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084696|gb|ABV14374.1| hypothetical protein CKO_03290 [Citrobacter koseri ATCC BAA-895]
          Length = 495

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 241/469 (51%), Gaps = 33/469 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI+  +     D     
Sbjct: 19  ERALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y   P   + + G +G +   +  Q + Q S L    
Sbjct: 79  MHGVPVIYLSQLNERLSALAGRFY-HEPSEHMRLVGVTGTNGKTTTTQLLAQWSQL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L+ L  QG T  ++E SSHGL QHR
Sbjct: 134 LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLVEQGATFGAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +K  A  FTNL RDH+DYH   + Y  AK  L+      E  AI+ ADD   +  + 
Sbjct: 194 VAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWTLYSTHHYGE--AIVNADDEVGRRWLV 251

Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQV 312
           R  +A    +    +    G++  LK V   ++    TI  +    + +    L G F V
Sbjct: 252 RLPDAVAVSMEDHINPNCHGRW--LKAVEVKYHDSGATIRFDSSWGEGEIESRLMGAFNV 309

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAHT ++LE  
Sbjct: 310 SNLLLALATLLALGYPLADLLKTAPRLQPVCGRMEVFSAPGKT-TVVVDYAHTPDALEKA 368

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+ +VTDDNPR+E+P  I  +I
Sbjct: 369 LQAARLHCTGQLWCVFGCGGDRDKGKRPLMGAIAEEFADVVVVTDDNPRTEEPRAIINDI 428

Query: 433 IHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
              + G ++ G+      R EA+  AI    + DV++VAGKGHE   IV
Sbjct: 429 ---LAGMLDAGHAKVMEGRAEAVTCAIMQAKENDVVLVAGKGHEDYQIV 474


>gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
 gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
          Length = 481

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 147/461 (31%), Positives = 247/461 (53%), Gaps = 40/461 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N++  DSR +  G +F+A  G   DGHL++ +AI  GA+AI+       + FS   + 
Sbjct: 16  EVNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIIC------EGFSFDRKE 69

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               + V +  + L++ AS  Y ++P     ++ VTGT+GK+++AS + Q+  ++G   +
Sbjct: 70  GITYIRVADANEALAIMASNFY-ENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAG---Y 125

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G  ST+     +       TTP  + + + L  +   GV +  +E SSHG+ Q R +G
Sbjct: 126 KVGLLSTVKILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKRTEG 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--- 258
           ++   G FTNL  DH+DYH+    Y N K + F++ LPK + A+   DD     +++   
Sbjct: 186 LQFSGGIFTNLSHDHLDYHKDFAEYRNVKKKFFDD-LPKSAFALTNIDDKNGNYMLQNTK 244

Query: 259 -RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            + ++   + L+  ++ K +          KQ     +   + +    L G F +YN   
Sbjct: 245 AKKYSYALKTLA-DFKAKILE---------KQLSGTLISIDNTEVWTKLIGVFNIYNLTA 294

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                  +G++   +L  + +L  V GRFE+V  +  G    VDYAHT ++L+ +L+ I 
Sbjct: 295 IIATAELLGLEKLDILTIVSQLESVNGRFEYV-VSEDGVTAIVDYAHTPDALKNVLETIN 353

Query: 378 TITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            I +   ++I V GCGGDRD+ KRP M  IA  L++ AI T DNPR+EDP+ I  E+  G
Sbjct: 354 DIRTNNEKVITVVGCGGDRDKSKRPKMAHIAAHLSNQAIFTSDNPRTEDPQIILDEMEAG 413

Query: 436 I-PGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I P    K     NR +AI+TA ++ +  D++++AGKGHE+
Sbjct: 414 ISPEHYNKTLTVVNRRQAIKTACKLSDAGDIILIAGKGHES 454


>gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
 gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
          Length = 487

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 233/468 (49%), Gaps = 19/468 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+A+    
Sbjct: 1   MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK---- 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 55  GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     ++ 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVVN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +      +     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQYSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A G  + +G     +L  L +L    GR + +G   +   + VDYAHT +
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    
Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAA 411

Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I A+I  G        F+   +R EAI   I      DV+++AGKGHE
Sbjct: 412 IIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457


>gi|251792018|ref|YP_003006738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533405|gb|ACS96651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 488

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 238/468 (50%), Gaps = 15/468 (3%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  +AG +F+AI G++ DG  +IPQA+  GA A++  +  + Q        N P++  
Sbjct: 24  DSRTAKAGCLFIAIKGHQTDGRQYIPQALQNGASAVIFEADSAQQHLQIHYEQNVPLIAF 83

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A   Y + P   L + G +G +   +  Q + Q + L         TI +
Sbjct: 84  YQLSENLSRLADVFY-QSPSKRLTLVGVTGTNGKTTTTQLLAQWTQLLGHTSAVMGTIGN 142

Query: 156 --FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
             F Q  +   TT S + +  +L+   +QG    ++E SSHGL QHR++G+   A  FTN
Sbjct: 143 GLFGQVKEAANTTGSAVEIQASLADFVAQGADFAAIEVSSHGLVQHRVEGVHFSAAVFTN 202

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH + + Y  AK RLF EL  +    II ADD      ++   NA     +  
Sbjct: 203 LSRDHLDYHHSMENYAAAKKRLFTELDSRNQ--IIDADDPIGAAWLRELPNAVAVSTNPD 260

Query: 272 YQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +  +     K   +H   +   +  +    D +    L G F V N L+     + +G  
Sbjct: 261 FSPQQTQWLKAVDVHFHHKGAVIKFASSWGDGELHSALIGAFNVSNLLLVTATLLTLGYS 320

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            + ++  + KL  V GR E + T +    + VDYAHT ++LE  L+  R    G++  +F
Sbjct: 321 LSELVNSVNKLTGVCGRMEML-TATHKPTVIVDYAHTPDALEKALQAARLHCHGKLWCIF 379

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEK-GNR 445
           GCGGDRD+GKRP+M  IA  L+D  I TDDNPR+ED  +I A+I+ G   P  ++    R
Sbjct: 380 GCGGDRDRGKRPLMAGIAEKLSDHVIATDDNPRTEDHTQIMADILKGFINPQAVQVIHQR 439

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            EAI TAI+   + DV+++AGKGHE   I+   +   S D ++ R  L
Sbjct: 440 EEAIATAIKSAVENDVILIAGKGHEDYQIIGKTKHHFS-DQEVARHYL 486


>gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
 gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
          Length = 478

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 236/465 (50%), Gaps = 42/465 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G IFVA+ G   DGH FI  A+  GA A++ S           +  +   +VV
Sbjct: 27  DSRKVKKGDIFVALEGAAFDGHKFIDMAVENGASAVIGSK-------EIEVNHDITYIVV 79

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQI-----CQRSGLSSFQI 147
            N R+ L + AS  Y K P+  L + G +G +   +    ++QI       R G   +++
Sbjct: 80  KNLRQKLGVIASNFY-KWPQKKLEIVGITGTNGKTTTTYLLEQILGEDKVSRIGTVEYKV 138

Query: 148 G----PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G    P             TTP  + L K       +G+ ++ +E SSH L+  R++ I 
Sbjct: 139 GNEIIPAPN----------TTPESLDLIKICRKSVDRGIKYLIMEVSSHALEMGRVEMID 188

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNL  +H+DYH+  + YF+AK +LF +   KE+  +   DD Y K +       
Sbjct: 189 FDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKEN-TVFNTDDFYGKRLFDEFGG- 246

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               +S G +   ++   +      Q++ +S +         L G+F VYN L A G+ I
Sbjct: 247 ----ISYGIESGDLNASMISHSLKTQEIELSFKEFQKKINIKLQGKFNVYNLLTAVGVAI 302

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+    + + LEKL   PGRFE +    +   + VDYAHT+++LE IL  +  I   +
Sbjct: 303 RLGLSLEEITDRLEKLESAPGRFECIEA-GQNFMVVVDYAHTADALENILSALNEIKIEK 361

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           II VFGCGGDRD  KR  M + A  L+DI IVT DNPR+EDP KI  E+  G+    +  
Sbjct: 362 IITVFGCGGDRDLSKRKPMAETAEKLSDIVIVTSDNPRTEDPVKILDEVSKGLSSLKDSL 421

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            + +R +AI  A+ M  K D++++AGKGHE   I+  G+ K+  D
Sbjct: 422 LEIDREKAIEKAVGMAKKNDIVLIAGKGHEDYQII--GKDKIHFD 464


>gi|161504755|ref|YP_001571867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866102|gb|ABX22725.1| hypothetical protein SARI_02878 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 495

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 162/462 (35%), Positives = 238/462 (51%), Gaps = 21/462 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEARDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA- 256

Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             V   G+      G+++  + V        +  +    + +    L G F V N L+A 
Sbjct: 257 VAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLAL 316

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +A+G     +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R  
Sbjct: 317 ATLLALGYPLTDLLKTAARLQPVCGRMEVFSAAGKA-TVVVDYAHTPDALEKALQAARLH 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   + G 
Sbjct: 376 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 432

Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 433 LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 509

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 240/468 (51%), Gaps = 23/468 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S+DSR I+ G +F+ + G K DG  F  +AI +GA A ++S   SL   +     
Sbjct: 24  EIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIERGACAAIISKKASL--LNPPTNE 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +  +++ +    F+   A+  +GK    I  + +TGT+GK++ +  ++ +    G  S  
Sbjct: 82  DPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTTSFLIEFLTTSLGHPSAL 141

Query: 147 IGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            G   +   +  + ++ TT   + L   L      GV + ++E SSH L Q+R+ G    
Sbjct: 142 FGTLINRWPNHEETSKYTTTFAVPLQAKLRKAVQAGVEYGAMEVSSHALSQNRVAGCDFN 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESP-AIIYADDAYSKEVMKRAHNA 263
              FTNL RDH+DYH + ++YF AK  LF   L+    P ++I  DD +  ++ K   N 
Sbjct: 202 GAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIEDGGPRSVINIDDKWGAKLAKEL-NK 260

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQVYNALV 317
            C   S+    +    K    I N Q +    +GK        +F+ PL GEF + N L 
Sbjct: 261 KCWTCSLKENSQ-TREKADLYISNLQIMQDGYKGKLHTPFGVENFISPLIGEFNLMNMLQ 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---GTNSRGGR--IYVDYAHTSNSLEMI 372
           A G+ +  G+    +L  L K   VPGR + +   G   + G   + VDYAHT + L+  
Sbjct: 320 AVGILVQRGLPLNDLLAALNKFPGVPGRMQLINMDGFKVKEGYPLVIVDYAHTPDGLQNA 379

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L   R++T  R+I VFGCGGDRD+GKR  MG++A   AD  +VT DNPR EDP +I  +I
Sbjct: 380 LIASRSLTKRRLICVFGCGGDRDKGKRSKMGEVAAKFADYIVVTSDNPRQEDPIEIIKDI 439

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             GI    E   +  R  AI+ AI    K DV+++AGKGHE   I+ +
Sbjct: 440 GKGITIDSEISVEPERSIAIQLAIAKAKKNDVVLIAGKGHEDYQILKD 487


>gi|238918673|ref|YP_002932187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868241|gb|ACR67952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Edwardsiella ictaluri 93-146]
          Length = 469

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 167/476 (35%), Positives = 237/476 (49%), Gaps = 24/476 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG+  DG  FIPQAIAQG  A++  +    +D S       P++ +
Sbjct: 2   DSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVYL 61

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +   + LS  A R YG+ P   L + G +G +   +  Q + Q + L    +G T  +  
Sbjct: 62  NRLNERLSALAGRFYGQ-PGADLRLVGVTGTNGKTTTTQLLAQWAQL----LGETGAVMG 116

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L  L+  G T V++E SSHGL Q+R+  +   A 
Sbjct: 117 TVGNGLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAAS 176

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-- 265
           +FTNL RDH+DYH   + Y  AK RLF      E   I+ ADD      + +  +A    
Sbjct: 177 AFTNLSRDHLDYHGDMEHYAQAKWRLFSTHHSGEK--IVNADDEMGLLWLDKLPDAVAVT 234

Query: 266 --RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              VL  G+ G+++    V        +       +      L GEF V N LVA    +
Sbjct: 235 VTGVLPEGWAGRWLAACSVAYHDGGATIAFDSSWGEGTLNSRLMGEFNVSNLLVALATLL 294

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G   A +     +L  V GR E     ++   + VDYAHT ++LE  L   R    G+
Sbjct: 295 ALGYPLAALCAASVQLQPVCGRMEVFQAPAKP-TVVVDYAHTPDALEKALLAARLHCQGQ 353

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF-I 440
           +  +FGCGGDRD GKRP+MG IA   AD  +VTDDNPRSE+P  I  EI+ G+  PG  +
Sbjct: 354 LWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLAM 413

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
               R EA+  A+     QDV++VAGKGHE   +V N     S    + R +LG++
Sbjct: 414 AIPGRAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVV 468


>gi|320531617|ref|ZP_08032559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136146|gb|EFW28152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 528

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 235/466 (50%), Gaps = 44/466 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--- 89
           VS DS     G +FV + G    G  F  +A+A GA A++  S     D +  +  +   
Sbjct: 50  VSVDSADTAPGELFVGLPGFTVHGARFAAEAVASGAVAVLTDS-----DGAQIVHESAPG 104

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQI-------CQR 139
           TP+LV  + R  +   ++  Y  HP   L   AVTGT+GK++ A F+  I       C  
Sbjct: 105 TPVLVHGDPRAIVGPLSAEAY-HHPARGLITTAVTGTNGKTTTAYFLDAILSAHVGGCMV 163

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G    ++G  S  S      R T  +P+ L + ++      V   S+EASSH +  HRL
Sbjct: 164 AGTVELRVGEHSVESP-----RTTVEAPV-LQRMMALAVEDRVGAASLEASSHAIVLHRL 217

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DGI +    FTNL RDH+D+H+T + Y  AK RLF     +    ++  DD +   +   
Sbjct: 218 DGIVVDVAGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARR--GVVCVDDQWGAALAAD 275

Query: 260 AHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVY 313
           A     RV +  Y G      ++    V    +    T+   +G+  +   PLPG   V 
Sbjct: 276 APIEIDRVRA--YPGDAPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQ 333

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMI 372
           NA +A  + I  G+ +A     L   H +PGR + +   + R G   VD+AHT  ++E+ 
Sbjct: 334 NAALALVMAIRAGVPAATAAAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELA 393

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK +R IT GR+IVVFG  GDRDQGKRP++G++   LAD+ ++TD+NPRSEDP+ IR  I
Sbjct: 394 LKAVRPITPGRLIVVFGSDGDRDQGKRPMLGQVCARLADVLVITDENPRSEDPQLIRDAI 453

Query: 433 IHGIPGFIEKGNRIE--------AIRTAIEMLNKQDVLVVAGKGHE 470
           + G+ G       +E        A+R  +E+    D ++V GKGHE
Sbjct: 454 LDGVRGVRPDLKDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHE 499


>gi|16759118|ref|NP_454735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140668|ref|NP_804010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052854|ref|ZP_03345732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426160|ref|ZP_03358910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213621300|ref|ZP_03374083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213647636|ref|ZP_03377689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213852463|ref|ZP_03381995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|289823739|ref|ZP_06543351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|21362697|sp|Q8Z9H3|MURE_SALTI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331979|pir||AH0517 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501408|emb|CAD01280.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29136292|gb|AAO67859.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 495

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 170/465 (36%), Positives = 243/465 (52%), Gaps = 27/465 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKF---IH---LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNAL 316
              ++V  +G      H   LK     ++ + VTI       + +    L G F V N L
Sbjct: 254 PDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLL 313

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE  L+  
Sbjct: 314 LALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAA 372

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   +
Sbjct: 373 RLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---L 429

Query: 437 PGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            G ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 430 AGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
 gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
          Length = 487

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 168/519 (32%), Positives = 264/519 (50%), Gaps = 59/519 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER---KINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKL DL+ K          I P++ R      IN V+ DSR ++ G +FVA+ G + DGH
Sbjct: 2   MKLSDLLQK----------ISPLETRGSLTIDINGVNMDSRLVEKGNLFVAVKGTQTDGH 51

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
            FI  AI +GA AI+VS     +   A   ++   + V +T   +   A+  YG   +  
Sbjct: 52  AFIAGAIEKGASAILVS-----EPIPAETPTDVTFVRVADTEDAIGKVATTFYGDPTQRL 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSPIYLA 171
            ++ VTGT+GK+++A+ +  +    G   F+ G  ST+ ++    A     TTP P+ L 
Sbjct: 107 KLVGVTGTNGKTTIATVLYHLFTELG---FKCGLCSTVCNYIGTHAVPTEHTTPDPVTLN 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           K L  ++ +G  +  +E SSH + Q R+ G+      FTNL RDH+DYH+T + Y +AK 
Sbjct: 164 KLLGEMADEGCEYAFMECSSHAIHQKRIGGLDFAGALFTNLTRDHLDYHKTFENYRDAKK 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHN 287
             F+  L K++ AI  ADD  +  +M +   A  +  S      Y+GK +         +
Sbjct: 224 AFFDG-LSKQAFAITNADDK-NGPIMVQNTKARIKTYSTRAAADYKGKILE-------ES 274

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            + + + + G++    F   G F V N L   G  I +G+     L  L  LH V GRFE
Sbjct: 275 LEGMLLEINGREVSVRF--VGRFNVSNLLAVYGAAIELGVSPDETLRVLSSLHPVNGRFE 332

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKI 405
            +  + +G    +DYAHT ++L  +L +I  I  G+  +I V G GG+RD+GKRP+M + 
Sbjct: 333 AI-RSPKGVSAIIDYAHTPDALANVLSSIDEIVHGKAQVITVCGAGGNRDKGKRPLMAQE 391

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEML 456
           A + +D  I+T DNPR E+P+ I  +++ G    +++  R + I         R A  M 
Sbjct: 392 AANRSDRVIITSDNPRFEEPQAIVDDMLAG----LDETQRAKTIAIVDRREAIRAAAAMA 447

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
              DV+++AGKGHE    +  G K    D + +R+  GL
Sbjct: 448 QAGDVILIAGKGHEPYQEI-KGVKHHFDDHEEVRKAFGL 485


>gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc punctiforme PCC 73102]
 gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC
           73102]
          Length = 500

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 160/492 (32%), Positives = 251/492 (51%), Gaps = 16/492 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+     + + QL+  P    + ++  + ++S     G +F+ + G + DG  F 
Sbjct: 1   MKLRELLTA--VDSVEQLASHPT-LEDVEVRGLKTNSHACGVGDLFIGMPGTRVDGGEFW 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A +VS   + ++      +   ++   N  +  +  AS  YG   + +  V
Sbjct: 58  QSAIASGAVAAIVSPEAAQKNPPT---NEAVVISASNITQACAQIASAFYGYPGQKLKLV 114

Query: 121 TGTSGKSSVAS--FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
             T       +   ++ +  ++ L++  +G   T  + F Q    TTP  + L + L+  
Sbjct: 115 GVTGTNGKTTTTHIIEFLLIKANLATALMGTLYTRWAGFEQTAAHTTPFAVELQQQLAEA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G     +E SSH L Q R+ G +     F+NL +DH+DYH+  + YF AK  LF   
Sbjct: 175 VNAGSEFGVMEVSSHALAQGRVLGCQFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPD 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   AII ADD+Y K ++    +      SV      + +  +    N     +    
Sbjct: 235 YLK-GRAIINADDSYGKRLIASLDSERVWSYSVNDNSADLWMSDLSYEPNGVSGILHTPK 293

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
            D  F  PL G++ + N L A G  + +G+D  LV   + +   VPGR E V  NS +  
Sbjct: 294 GDVAFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQDI 353

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRPIMG+IA +LAD+A+VT
Sbjct: 354 SVIVDYAHTPDSLENLLKAARPFIPGKVICVFGCGGDRDRTKRPIMGRIAAELADVAVVT 413

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E+PE+I  +++ GI   ++     +R  AIRTAI      D +++AGKGHE   
Sbjct: 414 SDNPRTENPERILEDVLAGIAQTVKPMVICDRATAIRTAILQAQPGDGVLLAGKGHEDYQ 473

Query: 474 IVTNGEKKMSVD 485
           I+  G +K+  D
Sbjct: 474 IL--GTEKIHFD 483


>gi|168243462|ref|ZP_02668394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168820883|ref|ZP_02832883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194449143|ref|YP_002044093.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|238911180|ref|ZP_04655017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|194407447|gb|ACF67666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205337520|gb|EDZ24284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205342491|gb|EDZ29255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084366|emb|CBY94159.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 495

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311
              ++V  +G   H+   C  H +     +VE    G    F            L G F 
Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESCLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I   + G ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|16763513|ref|NP_459128.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989996|ref|ZP_02571096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168234887|ref|ZP_02659945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737109|ref|YP_002113141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262729|ref|ZP_03162803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|204926802|ref|ZP_03218004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|21362703|sp|Q8ZRU7|MURE_SALTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16418622|gb|AAL19087.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194712611|gb|ACF91832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197240984|gb|EDY23604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197291875|gb|EDY31225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323467|gb|EDZ08662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205331379|gb|EDZ18143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245356|emb|CBG23145.1| Meso-diaminopimelate-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|301156751|emb|CBW16226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911092|dbj|BAJ35066.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222302|gb|EFX47374.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323128443|gb|ADX15873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|332987076|gb|AEF06059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 495

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311
              ++V  +G   H+   C  H +     +VE    G    F            L G F 
Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I   + G ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
 gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
          Length = 479

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 246/465 (52%), Gaps = 39/465 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++ E++ +S+ +  G IF AI G K DG+ FI  A+++GA A+V +         A  
Sbjct: 12  EVEVGEITQNSKLVVPGDIFFAIKGAKVDGNDFIDDAVSKGAVAVVSTE-------PAKK 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
           +   P   VD+    ++  A + Y K+P +    + +TGT GK+S++  ++ I   +G+ 
Sbjct: 65  KYPVPYFQVDDIDLAMAKAAVKFY-KNPSDDMFFIGITGTKGKTSISYLLESIFNEAGIP 123

Query: 144 SFQIGPTS---TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              IG  +       FA+    TTP+ +YL   +  + S G   V +E SSH L+  R+ 
Sbjct: 124 CSVIGTINYRINGEVFAKAPN-TTPAALYLYYMIDKMRSAGTKVVIMEVSSHALELKRVF 182

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVM 257
           G+      FTNL RDH+D+H+  + YF AK +LF+ L+    PA   I+  DD Y     
Sbjct: 183 GLNFDVALFTNLQRDHMDFHKNFENYFAAKEKLFDSLIENSKPAKTAIVNIDDQY----- 237

Query: 258 KRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVY 313
                 G R+   +  +   I +  V A + K+    VT S +G+       L G+  +Y
Sbjct: 238 ------GLRLADKIKAKTTLIPVSLVEAENVKESLNGVTFSYKGESASI--NLLGKHNLY 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A    +A G+D    L+ + KL  +PGR + V    +   ++VD+A+T+ SL    
Sbjct: 290 NAVFAVKAAMAYGVDLQTALKGIAKLQGIPGRMQRV-NKGQPFYVFVDFAYTTESLMKAY 348

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +    +G II VFGCGGDRD+ KRP+MG  A   +   ++T+DNPR+ED ++I  +I+
Sbjct: 349 ETLEPYKNGNIITVFGCGGDRDRTKRPLMGLAACQNSSHVLLTNDNPRTEDQQQIFNDIL 408

Query: 434 HGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +G+ G+       +R  AI+T I +  + D+L++AGKGHE   I+
Sbjct: 409 NGMKGYTNYEIVQDRALAIKTGISLCKENDILLIAGKGHEDYQIL 453


>gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 499

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/480 (32%), Positives = 245/480 (51%), Gaps = 32/480 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +  DSR +  G IFVA+ G   DG  +IP+A+A G   IV            +   
Sbjct: 33  QVTSIEQDSRRVSEGCIFVALRGVHVDGADYIPKALAAGCRIIVTELPRP-----ESASD 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               L V +T K +++ AS  Y + PE    I+ VTGT+GK++ A+   Q+    G+ + 
Sbjct: 88  EVVWLTVTDTAKAIAVLASVYYDR-PERQLTIVGVTGTNGKTTTATLCYQLWSWLGMRAA 146

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                ST+     D       TTP  + L + +  +   G  ++ +E SSH L Q R+ G
Sbjct: 147 LF---STVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYG 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH T QAY  AK  LF+ L P ++ A++ ADD  +  VM    
Sbjct: 204 LPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLTP-DAYALVNADDR-NGSVM--VQ 259

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N    + +   +    ++ ++   +     T+ ++ ++ +    L G +  YN     G+
Sbjct: 260 NCAAHLHTYAMRSHADYMAQLLGQYVDGS-TLLLDNEEVEI--KLVGSYNAYNVTAVYGV 316

Query: 322 C--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +   +D +L+L  +  L  V GRF+ + +  RG  + VDYAHT ++LE +LK +  +
Sbjct: 317 ARLLLPDLDKSLILRGISSLEHVNGRFDLLAS-PRGYHVVVDYAHTPDALENLLKTVSEL 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
            + ++ VV G GGDRD GKRP MG+IA ++ D   +T DNPRSEDP+ I  +++ GIP  
Sbjct: 376 NASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSEDPQTIIDQMLEGIPQA 435

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                    +R +AI  A     + D++V+AGKGHET   +  G +    D +++REI  
Sbjct: 436 ERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETYQEI-EGVRHHFDDKEVVREIFA 494


>gi|168230402|ref|ZP_02655460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194469969|ref|ZP_03075953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456333|gb|EDX45172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205335121|gb|EDZ21885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 495

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311
              ++V  +G   H+   C  H +     +VE    G    F            L G F 
Sbjct: 254 PDAVAVSMEG---HINSNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGGIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I   + G ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas mossii DSM 22836]
          Length = 483

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 168/509 (33%), Positives = 257/509 (50%), Gaps = 42/509 (8%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKLQDL+   D  E+  +  I         +  V +DSR    G +F+A+ G + DGHL+
Sbjct: 1   MKLQDLLKNIDVIEIKGEQDI--------NVTGVFTDSRKATPGSVFIALKGVQVDGHLY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  A+  GA+ I+  +         T       + V ++       A+  YG    N+  
Sbjct: 53  IKNALELGAKVILHENKID------TSNEGITYIKVKDSADAAGKIATHWYGDPSNNLKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAK 172
           + VTGT+GK++ A+ + ++ ++ G   +++G  ST++++  D ++     TTP PI L +
Sbjct: 107 VGVTGTNGKTTTATLLYEMFRKLG---YKVGLLSTVANYI-DGKVYHATHTTPDPISLNE 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +   G  +  +E SSH + Q R+ G+K   G FTNL +DH+DYH+T   Y  AK  
Sbjct: 163 MLKNMVDAGCEYAFMEVSSHAIHQKRISGLKFEGGIFTNLTQDHLDYHKTMGEYLKAKKA 222

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F++ LP  + A+   DD  +  VM +   A     SV     F   K      +     
Sbjct: 223 FFDQ-LPDTAFALTNIDDK-NGLVMLQNTKAKTSTYSVHSLADF---KARIIEKHFDGTA 277

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I + GK+    F   G F VYN L   G  + +G  S   L  L  L  V GRFE +  +
Sbjct: 278 IEINGKELQVQF--VGVFNVYNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETI-RS 334

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           S+G    VDYAHT ++L  +L+ I  +   +GR+I V GCGG+RD+ KRPIM + A+ L+
Sbjct: 335 SQGFTAIVDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLS 394

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T DNPR E+P+ I  ++  G+     K       R +AI+TA  +    DV+++A
Sbjct: 395 DQVILTSDNPRYEEPQAIINDMADGLNSEQLKKALLIVEREQAIKTACALAKAGDVILIA 454

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKGHE    V  G K    D +I++ I G
Sbjct: 455 GKGHEDYQDV-KGVKHHFDDKEIVKNIFG 482


>gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
 gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
          Length = 1035

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 246/494 (49%), Gaps = 34/494 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  LI +D  EL    ++  +    R I  V  DSR +  G +FVA+ G + DGH ++
Sbjct: 1   MKLATLI-QDLAELA---AVRVVGDDARDIRAVRDDSRRVGPGDLFVAVRGARTDGHAYL 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P  I  GA A+VV  A      +A +   T ++V +  R  L + A+R+ G+  E   ++
Sbjct: 57  PAVIDAGAAAVVVERAIEDPALAARV---TQVIVPEGARA-LGVLAARMAGRPGERMRLV 112

Query: 119 AVTGTSGKSSVASFVQQI-------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            +TGT+GK++ +  ++ I       C   G  S++ G     + +      TTP+ + L 
Sbjct: 113 GITGTNGKTTCSYLIESILRAHDATCGVIGTVSYRYGAREVPAPY------TTPTALILQ 166

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +AL  + +   TH  +E SS  L   RL G  +   +FTN  +DH+D H +  AY  AK 
Sbjct: 167 EALGEMVAASCTHAVLEVSSAALAMERLSGTTVEVAAFTNFTQDHLDVHGSMDAYRAAKE 226

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHN 287
           RLF + L +   A+I  DD  +  ++  A     RV+ V    G       ++ + A   
Sbjct: 227 RLFRDHLAENGVAVIDVDDKAAPHMIAAAGER--RVVRVSARPGATAADAEVRVLAAETT 284

Query: 288 KQQVTISVEGKDFDFLFPLP---GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              +T         F    P   G + V N  VA  +C A+ +  A +   +E +  VPG
Sbjct: 285 IAGITAEFATPRGSFTLRAPALLGHYNVANLAVAVAVCDALDVPHATIARGIEAMSGVPG 344

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V  N  G  I VDYAHT ++L  +L  +R +T  R++ VFGCGGDRD  KRP MG 
Sbjct: 345 RVERV-ANDAGLDILVDYAHTPDALASVLAALRPLTQRRLLCVFGCGGDRDADKRPKMGA 403

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLV 463
            A   AD+ +VT DNPRSE P  I  +I+ G+P  F    +R   I  A+      D+++
Sbjct: 404 AAAAGADLVVVTSDNPRSEAPRAIIDQILPGVPAPFFVHSDRRVGIAAAVFEAVPGDIVL 463

Query: 464 VAGKGHETVHIVTN 477
           +AGKGHET  I+ +
Sbjct: 464 IAGKGHETYQILGD 477



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R +  G ++VAI G + DGH F  QA   GA A++V    + +D +        ++ V
Sbjct: 527 DGRQVAPGDLYVAIRGEQHDGHAFCEQAANAGACALMVERGRAPRDAAGNA-LKLAVIEV 585

Query: 96  DNTRKFLSLFA 106
           D+TR  L   A
Sbjct: 586 DDTRLALGSVA 596


>gi|227497585|ref|ZP_03927808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
 gi|226832954|gb|EEH65337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
          Length = 549

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/495 (32%), Positives = 246/495 (49%), Gaps = 45/495 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS DS  +  G +FVA+ G +  G  F       G    V++ A       A++   
Sbjct: 46  IHGVSVDSGDVAPGELFVALPGFRRHGAEFA-AQAVAGGAVAVLTDADGATRLGASL-GQ 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQI-------CQR 139
            P+L   + R  +   A+ +Y  HP   L  T  +G +   +   F+Q I       C  
Sbjct: 104 VPVLTHPDPRAVVGPLAAEVY-HHPATHLTTTAVTGTNGKTTTTYFLQSILAAHLGQCMI 162

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G     +G  S  S      R T  +P+ L + ++    +GV   S+EASSH +  HRL
Sbjct: 163 AGTVELSVGTQSVESP-----RTTVEAPV-LQRMMALAVEEGVKAASLEASSHAIVLHRL 216

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G  +    FTNL RDH+D+H T + Y  AK RLF     +   A+I  DD +   + +R
Sbjct: 217 GGTVVDVAGFTNLQRDHLDFHHTMEEYLEAKARLFTPEHARR--AVICVDDRWGAALAER 274

Query: 260 AHNAGC----RVLSVGYQ-------GKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFP 305
             + G     RV +   Q       G    + +V A   +   T ++ G D    + L P
Sbjct: 275 VADRGAVPVDRVRAYPAQDSEDPAQGAQWWVSQVKASMTQAATTFTLHGPDGEQIEALCP 334

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAH 364
           LPG   V NA +A  + +  G+     ++ L   H +PGR + +   + R G   VD+AH
Sbjct: 335 LPGLVNVQNAALALVMALRAGVAQDTAVQALAHAHNIPGRMQRISQRDGRRGTCIVDFAH 394

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T  ++++ LK +R IT GR+IVVFG  GDRDQGKRP++G++A  LAD+ +VTD+NPRSED
Sbjct: 395 TPEAMDLALKAVREITPGRLIVVFGSDGDRDQGKRPLLGQVAARLADVLVVTDENPRSED 454

Query: 425 PEKIRAEIIHGI----PGF--IEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           P+ IR  ++ G+    PG   +E+    R +A+R  +E+   QD ++V GKGHE   +  
Sbjct: 455 PQLIRDAVLAGVRSVRPGLEDVEEITTWRGDAVRRGVELCGPQDTVIVTGKGHEPF-LEM 513

Query: 477 NGEKKMSVDCDIIRE 491
            GE     D  ++RE
Sbjct: 514 AGEFIRYNDAPVMRE 528


>gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
 gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
          Length = 486

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 245/468 (52%), Gaps = 40/468 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  + +D+R +  G +FV I G   DGH F   A  +GA A++      L         
Sbjct: 22  EITAIVNDNRKVTPGSLFVCIEGYTVDGHDFAASAAKKGAAAVIAQRELDL--------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P++VV NT++ +++ A   YG+  +  +++ +TGT+GK++ +  +++I   +G  +  
Sbjct: 73  DIPVIVVKNTKRAMAVLADAFYGQPSKQLHLIGITGTNGKTTTSHLIEKILADAGRKTGL 132

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T I+    + + TTP  + L      ++  GV    +E SSH LD+ R+ G    
Sbjct: 133 IGTMYTKIADETFEVKNTTPESLTLQSTFKKMADAGVDSAVMEVSSHALDEGRIHGCDFN 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRA 260
              FTNL +DH+DYH+T   Y  AK  LF +L      E P  AI+ +DD  S E  K  
Sbjct: 193 IAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSSYNHEEPKYAILNSDDPASAEYEK-- 250

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311
            +    V+S G   +   L+ +        + ++  G +FD + P         + G+F 
Sbjct: 251 -STAAHVISYGIDQE-ADLRAI-------NIQMTSGGTEFDLISPFGKHKVSLKMIGKFS 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +YN L + G  IA GI  + +++  E++  V GRFE V    +   + VDY+HT +SL+ 
Sbjct: 302 IYNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDAG-QDFSVIVDYSHTPDSLKN 360

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ ++     RI  + GCGGDRD+ KRP+M +IA   +   I T DNPRSEDP +I  +
Sbjct: 361 ALETVKQFALKRIFTIVGCGGDRDRSKRPLMAEIACQYSTDPIFTSDNPRSEDPIQILRD 420

Query: 432 IIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +  G+ G   K   +R EAI  A++  +K DV+++AGKGHET   V N
Sbjct: 421 MEEGVKGESYKTIADRKEAIHYAVKNASKGDVILIAGKGHETYQQVGN 468


>gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 491

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 253/509 (49%), Gaps = 34/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DLI        +  ++     R      V+ D+  +  G +F A+ G+   G   +
Sbjct: 1   MKLSDLIAGQ-----DHHALRGTPDRTNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAV 55

Query: 61  PQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117
             A+A+GA A++V   A +L         +  +L V + RK  ++ ASR +G+     ++
Sbjct: 56  APAVARGAVAVLVDEQAPTLP----AAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-------NRLTTPSPIYL 170
           +A+TGT+GK+SV+   + + + +     ++G   T  S   D       + L+TP    L
Sbjct: 112 IAITGTNGKTSVSYMTESVLRLA--ERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDL 169

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK
Sbjct: 170 QYLLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAK 229

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQ 289
           +RLF+ L  +   A++ ADD     + K    A   V +    G   +     A+  +  
Sbjct: 230 LRLFQGLCRR---AVVNADDPVGAGIRKLMPGA---VTTYALDGDADYRASDLAVDASGS 283

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T+  +G+ +    P PG F V NAL     C  +G   A +++ LE++  +PGRFE +
Sbjct: 284 RFTLHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERL 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   
Sbjct: 344 QIPG-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTH 402

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +D+ ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      DV+++A
Sbjct: 403 SDLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALGEAGPDDVVLIA 462

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKG E  H    GE     D   +RE++G
Sbjct: 463 GKGSEP-HQSVRGELLPFSDMATVRELIG 490


>gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 492

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 231/480 (48%), Gaps = 26/480 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
            AIA GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDD---GKFTWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEEATHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GY---QGKFIHLKKVCAIHNKQQVTIS 294
                AII  DD Y  E++ R     C  L+V GY   +   I +    A  +  +    
Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKK-DCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQ 288

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +      L G F   N      L  A G     VLE L K+    GR + +  NS 
Sbjct: 289 TPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMDCI-MNSG 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD 
Sbjct: 348 KPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADK 407

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE 
Sbjct: 408 VVVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVERAAANDIILIAGKGHEN 467


>gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
 gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
          Length = 491

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 159/477 (33%), Positives = 247/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR +  G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + ++ +  G  +  IG  +  I     + + TTP  + L +    +  + V    +E 
Sbjct: 117 HIMDEVMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFHRMIEENVNSAVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHDREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNNDDPVAEEYMR---STAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPNESINIT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    +++ ++KL  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAAVAAGLVSGVPLQTIVDVVKKLTGVPGRFEVVD----GGQDYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A   A  AI+T DNP
Sbjct: 350 DYAHTPDSLENVLITAKQFAKGNVYCIVGCGGDRDRTKRPIMAAVATKYATHAILTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP+ I  +++ G  G  +    +R EAI  AI     +D++++AGKGHET  I+
Sbjct: 410 RSEDPKLILDDMLTGAKGNNYEVIIDRKEAIFHAISEAKAEDIIIIAGKGHETYQII 466


>gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
 gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
          Length = 486

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 167/477 (35%), Positives = 247/477 (51%), Gaps = 40/477 (8%)

Query: 13  ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  L+I  +    + +++ ++ DSR  + G +FV I G   DGH +I  AI  G +A 
Sbjct: 5   ELVMNLNIKAINGNLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYINDAIENGTKAF 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128
           +V     + +   TI        +D+TR  L+  +   +G HP    N++ +TGT GK++
Sbjct: 65  LVQKHVVVPEGITTIE-------IDDTRFGLAAVSDAFFG-HPSSKFNLIGITGTKGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               V+ I + +G +   +G  +  I S       TTP    L    S +  + V    +
Sbjct: 117 TTYMVKAIMEAAGRNMGLVGTLANLIGSEVLYTSRTTPESYDLQSLFSDMVEKKVDSTVM 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAI 245
           E SS GL+ HR+       G FTN  RDHI    H T + YFNAK +LF+        A+
Sbjct: 177 EVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMC----RKAV 232

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I  D  + +   K A  A C+V + G   K  I    +         T++      D   
Sbjct: 233 INIDSEHGR---KMAELAKCKVFTYGLSDKADIWASDIVKKTGHTYFTLNSPWGSIDIET 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGR--I 358
            L GEF +YNAL A G C  I     + LEH    L K+  VPGR E V T   GG   +
Sbjct: 290 DLQGEFNIYNALAAIGSCCLI---PGITLEHVRLGLTKV-TVPGRMESVKT---GGNYSV 342

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAHT +SLE +LK ++    GR++ +FGCGGDRD+GKRP MG+I+ ++AD  I+T D
Sbjct: 343 LIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIITSD 402

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPR+E+PE+I  +I  GI      +I+  +R +AI+ A+E     D++++AGKGHET
Sbjct: 403 NPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAVDGDIIILAGKGHET 459


>gi|197251914|ref|YP_002145109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215617|gb|ACH53014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 495

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311
              ++V  +G   H+   C  H +     +VE    G    F            L G F 
Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I   + G ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|200389058|ref|ZP_03215670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199606156|gb|EDZ04701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 495

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEAADGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311
              ++V  +G   H+   C  H +     +VE    G    F            L G F 
Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESCLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I   + G ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
 gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
          Length = 503

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 169/477 (35%), Positives = 239/477 (50%), Gaps = 39/477 (8%)

Query: 35  SDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           SDSR I  +   +F A  G+  DG  +I +AI  GA+A+V    Y   DF          
Sbjct: 25  SDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVV----YESSDFEWNPDWKVDH 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V   +      A   YG    +  I+AVTGT+GK+S   ++ Q   R G  +  IG T
Sbjct: 81  LGVVGLKANAGPIADAFYGSPARSMSIIAVTGTNGKTSTTQWIAQALSRLGRKTAVIG-T 139

Query: 151 STISSF-------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +S F       +++   TTP  + L + L+ L S+ V  V++EASS G+DQ RL+G+ 
Sbjct: 140 LGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIGIDQGRLNGLT 199

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTN  RDH+DYH    +Y  AK RLF     K   A++  DDA   E+   A   
Sbjct: 200 IDIALFTNFTRDHLDYHHDMASYKAAKRRLFGWKGLKH--AVVNLDDAMGIEL---ASEL 254

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314
             ++   GY       +    + N   +     G +F    P         L G F V N
Sbjct: 255 KSKMALTGYS--INGARADIPVLNAVDIRNRTHGDEFRIESPYGDSKIRTQLIGRFNVSN 312

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L   G+ +A GID    ++ L  L   PGR + +G       + +D+AHT ++LE  L 
Sbjct: 313 VLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQQMG-GKEAPLVVIDFAHTPDALEKGLS 371

Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +R +    +G++  +FGCGGDRD GKRP MG+ A + AD+ IVT DNPRSEDP+KI  E
Sbjct: 372 TLRHVADDRNGKLWCIFGCGGDRDHGKRPEMGEKA-ESADVIIVTSDNPRSEDPKKIMEE 430

Query: 432 IIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           I+ G+    I+  +R  AI TA++  +K DV+ VAGKGHE    V  G K+   D D
Sbjct: 431 IVSGMTKDPIQVEDRATAILTAVKQASKNDVIFVAGKGHEAYQEV-KGVKRPFADAD 486


>gi|167550682|ref|ZP_02344439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168262192|ref|ZP_02684165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324307|gb|EDZ12146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205348805|gb|EDZ35436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 495

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311
              ++V  +G   H+   C  H +     +VE    G    F            L G F 
Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I   + G ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|241664312|ref|YP_002982672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12D]
 gi|240866339|gb|ACS64000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12D]
          Length = 514

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 173/486 (35%), Positives = 239/486 (49%), Gaps = 34/486 (6%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA ++GN   + DG   IPQAI  GA A++  +        A +R
Sbjct: 32  DLTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLYG-KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               IL VD   +     A++ YG   PE   ++ VTGT+GK+S + ++ Q   + G   
Sbjct: 92  ----ILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147

Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +G   T  +   A     TTP  I L ++L+ L   G   +++E SSHGL+Q R+DG 
Sbjct: 148 AVVGTLGTGFVDGLAVTG-FTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGT 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    +++ A  
Sbjct: 207 CFDIAVFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLQNA-R 263

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313
           A    +  G  G+               V     G  FD            P  G F V 
Sbjct: 264 ADIETIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVS 323

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L   G  +A G+     + HLEKL  V GR E  G    G  + VDYAHT ++LE  L
Sbjct: 324 NLLAVLGALLAAGVPWPDAIAHLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382

Query: 374 KNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + +  IT  R   +  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP+ I  
Sbjct: 383 RALAPITEARGGNLWAVFGCGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILD 442

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           EI  G+       +  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D +
Sbjct: 443 EIADGMENPRAATQIEDRAAAILHAVRHADALDVIVVAGKGHESTQEIA-GRKRPFSDQE 501

Query: 488 IIREIL 493
            +R  L
Sbjct: 502 HVRLAL 507


>gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 499

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/495 (31%), Positives = 250/495 (50%), Gaps = 32/495 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L++Q     +   +  +  +  DSR    G IFVA+ G   DG  +IP+A+A G   IV 
Sbjct: 18  LLSQAYTGEVSTEQCPVTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVT 77

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVA 130
                      ++      L V +T K +++ AS  Y + PE    I+ VTGT+GK++ A
Sbjct: 78  E-----HPRPESLSDEVAWLTVTDTAKAIAVLASVYYDR-PERQLTIVGVTGTNGKTTTA 131

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186
           +   Q+    G+ +      ST+     D       TTP  + L + +  +   G  ++ 
Sbjct: 132 TLCYQLWNWLGMRAALF---STVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLF 188

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q R+ G+      FTNL RDH+DYH T QAY  AK  LF+ L P ++ A++
Sbjct: 189 MEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLSP-DAYALV 247

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD     +++   N    + +   +    ++ ++   +     T+ ++ ++ +    L
Sbjct: 248 NADDRNGSVMVQ---NCAAHLHTYAMRSHADYMAQLLGQYVDGS-TLLLDNEEVEI--KL 301

Query: 307 PGEFQVYNALVAAGLC--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            G +  YN     G+   +   +D +L+L  +  L  V GRF+ + +  RG  + VDYAH
Sbjct: 302 VGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLAS-PRGYHVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE +LK +  + + ++ VV G GGDRD GKRP MG+IA ++ D   +T DNPRSED
Sbjct: 361 TPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSED 420

Query: 425 PEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P+ I  +++ GIP           +R +AI  A     + D++V+AGKGHET   +  G 
Sbjct: 421 PQTIIDQMLEGIPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETYQEI-EGV 479

Query: 480 KKMSVDCDIIREILG 494
           +    D +++REI  
Sbjct: 480 RHHFDDKEVVREIFA 494


>gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 534

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/483 (31%), Positives = 259/483 (53%), Gaps = 24/483 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIR 87
           +I+ +S DSR  + G +F  I G K+DGH ++   +++G  A+V      S +      +
Sbjct: 53  EISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLEDVLSKGVSAVVAQYDCLSSEQKKLLTQ 112

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-SGLSSFQ 146
            + P+++V ++RK  ++ AS+ Y  +P + L VTG +G     + V  I +  S     +
Sbjct: 113 IDIPVILVTDSRKAFAILASKYYN-YPGDSLRVTGVTGTKGKTTTVNLIDKLLSEGKEVK 171

Query: 147 IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G   TI++   D       TTP P+ L + L  + + G +HV++E SSH + Q R+ G+
Sbjct: 172 TGMIGTINARIDDQEEKQPTTTPGPLELNELLGRIENSGASHVTLEVSSHAISQLRIAGV 231

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESP----AIIYADDAYSKEV 256
            L    +TNL  +H+DYH     Y   K R+F  + L P+++     A+I  DD Y+  +
Sbjct: 232 DLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSFQGLKPEKNDKPKLAVINLDDKYASYM 291

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +++      +VL+ G+ +   +  K +       ++ I+    +F    PL G+F  YN 
Sbjct: 292 LEQP---AVQVLTHGFDENAHVKGKIINTAETFTELKITSPWGNFTVKTPLIGKFNCYNL 348

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI ++ +   LE+   +PGRFE +        + VD+AHT++SL+ +L++
Sbjct: 349 LAAITVALFEGIPASKIQTILEQPINIPGRFERIDLGQEF-TVVVDFAHTTDSLQEVLQS 407

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R + SG+I VVFGCGG+RD+ KRP MG+ A DL D   +T DNPR+EDP+KI  +I+ G
Sbjct: 408 LRQMVSGKIGVVFGCGGERDKSKRPKMGRAASDLGDKIFITSDNPRAEDPQKIVQDILSG 467

Query: 436 IPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                 +      +R +AI  ++    + D +++AGKGHE    + NG+     D +I R
Sbjct: 468 CDVNNNEKIQIELDRAQAIEKSLNWAREGDAVLIAGKGHEATQEI-NGKVINFDDREIAR 526

Query: 491 EIL 493
           E L
Sbjct: 527 EKL 529


>gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
 gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
          Length = 495

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 155/473 (32%), Positives = 242/473 (51%), Gaps = 55/473 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR +Q G +F+ + G   DGH +  QA+A GA A+VV     +           P 
Sbjct: 26  IGADSRRVQPGDLFLCLPGFTVDGHDYAGQAVASGAAALVVERELDVP---------VPQ 76

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LVV + R  +++ A  ++      +  + +TGT+GK+++   +++I Q +G+++  IG T
Sbjct: 77  LVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTITYLIEKIMQDAGVNTGLIG-T 135

Query: 151 STISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +    Q   +  TTP  + L + L  ++ QGV    +E SSH L+Q R+ G       
Sbjct: 136 IQMRYNGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGRVKGTDFRTAI 195

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMKRAH 261
           FTNL +DH+DYH T + Y  AK  LF  L             A++ ADD  S  +  +  
Sbjct: 196 FTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASNSKYAVLNADDPASSYLQAQT- 254

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGEFQV 312
               +V++ G       ++K   +    ++TIS +G  F         D    + G+F V
Sbjct: 255 --AAQVITYG-------VEKDSDVQ-ASRITISAKGTSFHVSTFKGETDIELRMVGKFNV 304

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YNAL A    +  GI    +   LE +  V GR E V        + VDYAHT + LE +
Sbjct: 305 YNALAAISAALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFA-VIVDYAHTPDGLENV 363

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ ++   +G++  VFGCGGDRD+ KRP+MGKIA   +D + +T DNPR+EDP  I  +I
Sbjct: 364 LRTVKEFATGKVWCVFGCGGDRDRTKRPLMGKIAARYSDHSFITSDNPRTEDPIVILKDI 423

Query: 433 IHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             G+   I++G          +R  AI  A+EM +  DV+++AGKGHET  ++
Sbjct: 424 EQGL---IDEGVPAERYELIVDRRTAIHKAVEMASPDDVVLIAGKGHETYQLI 473


>gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
 gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
          Length = 483

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 239/483 (49%), Gaps = 37/483 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+ +I  V+SDSR ++ G +FV I G + DGH +  +A   GA AI+   A  L++    
Sbjct: 17  RDCEITGVTSDSRQVEPGTLFVCIRGTRADGHDYAVKAAEAGAAAILCERAIGLENE--- 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
                  +V  +T     +     YG     +  + VTGT+GK++V+  V+ I + +G  
Sbjct: 74  -------IVCHDTHYAYGIVCGNWYGNPARRLRLVGVTGTNGKTTVSYMVKHILESAGHQ 126

Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG   + I       + TTP P+ L   L+ ++  G  +V +E SSH LDQ RL G+
Sbjct: 127 TGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARMADAGCEYVVMECSSHALDQQRLAGL 186

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-H 261
           +  +  FTNL +DH+DYH   ++Y++AK +LF         A +  DDAY + +     H
Sbjct: 187 RFASVGFTNLTQDHLDYHGDMESYYHAKKKLFSMC----DAAAVNMDDAYGERLAAEVRH 242

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  S          K +    +  +  I  +G       P+PG+F V NA+ AA +
Sbjct: 243 ICPVTTFSTVSDAADFTAKDIRPAPDSSRFMIVGKGAIARVRLPIPGDFSVANAMTAAVM 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT 378
           C+A+G+      + L     V GR E + T    G  YV   DYAH+ + LE I+  ++ 
Sbjct: 303 CMALGLTLEQAAQGLNTCQGVVGRIEVLPT----GTDYVVIRDYAHSPDGLEKIITTMKK 358

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              GR++ +FGC G+RD+ KR  M +I   L+D  I+T DNPR ED  +I   I    PG
Sbjct: 359 FARGRVVTLFGCAGNRDRTKRKKMAEIVARLSDFVILTSDNPRDEDEMQI---IEDAKPG 415

Query: 439 FIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            +E          +R  AI  A+    K DVL++AGKGHE   ++ +GE     +  I+ 
Sbjct: 416 LLEHPDTPYEIIPDRYAAIEWALGHAKKDDVLILAGKGHEDYQVL-HGETICFDERQIVL 474

Query: 491 EIL 493
           E+L
Sbjct: 475 ELL 477


>gi|300715303|ref|YP_003740106.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
 gi|299061139|emb|CAX58246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
          Length = 471

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 159/479 (33%), Positives = 239/479 (49%), Gaps = 30/479 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   +G +FVAI G+  DG  FIPQAIAQG  A++  +    +D   T     P++ +
Sbjct: 4   DSREAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIADAEGEAEDGDITEMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y + P + L + G +G +   +  Q + Q   L    +G T  +  
Sbjct: 64  AQLSQRLSALAGRFY-QQPGDKLRLIGVTGTNGKTTTTQLLAQWGQL----LGETGAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +           TT S + + + L  L  QG T  ++E SSHGL QHR+  +   A 
Sbjct: 119 TVGNGLYGHLVPAENTTGSAVEVQQTLHSLVEQGATLAAMEISSHGLVQHRVAALPFAAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL RDH+DYH     Y  AK  LF E   +    I+ ADD   +  +++  +A    
Sbjct: 179 AFTNLSRDHLDYHGDMARYEAAKWLLFSE--HQVGQIIVNADDEVGRRWLQKLPDAVAVT 236

Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +      G  G+++   +V    N  ++       + +    L G F V N LVA G  +
Sbjct: 237 MEDNIDPGCHGRWLQATEVDYHDNGAKIRFDSSWGEGEIESRLMGAFNVSNLLVALGTLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G     ++    +L  V GR E      +   + VDYAHT ++LE  L+  R   +G+
Sbjct: 297 ALGYPLDSLIATGNQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALEAARLHCTGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  VFGCGGDRD+GKRP+MG IA   +D+ ++TDDNPRSEDP  I A+I+ G+   ++ G
Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEQFSDVVVITDDNPRSEDPAAIVADILSGL---LDAG 412

Query: 444 ------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
                  R +A+   +    + D+++VAGKGHE   IV N     S    + R +LG+I
Sbjct: 413 RARVMPGRAQAVTNTVMQAQEGDIVLVAGKGHEDYQIVGNRRLDYSDRITVAR-LLGVI 470


>gi|295098589|emb|CBK87679.1| UDP-N-acetylmuramyl-tripeptide synthetases [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 471

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 236/467 (50%), Gaps = 43/467 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y + P + L + G +G +   +  Q + Q + L    +G T  +  
Sbjct: 64  SQLNERLSALAGRFYNE-PSDQLKLVGVTGTNGKTTTTQLMAQWAQL----LGETGAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + + + L+ L+ QG T  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGKVSPTENTTGSAVDVQRVLAGLAEQGATFAAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---- 263
            FTNL RDH+DYH   + Y  AK  L+         AII ADD   +  +++  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYS--THHHGQAIINADDEVGRRWLEKLPDAVAVS 236

Query: 264 -------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                   CR       G+++   +V    +   +  +    + +    L G F V N L
Sbjct: 237 MEDRINPNCR-------GRWLKAVEVNYHDSGATIRFASTWGEGEIESRLMGAFNVSNLL 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A    +A+G   A +L+  E+L  V GR E      +   + VDYAHT ++LE  L+  
Sbjct: 290 LALATLLALGYPMADLLKTSERLQPVCGRMEVFSAPGKP-TVVVDYAHTPDALEKALEAA 348

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R   +G++  VFGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+P  I  +I   +
Sbjct: 349 RLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRVIINDI---L 405

Query: 437 PGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G ++ G       R EA+  AI    + DV+++AGKGHE   IV N
Sbjct: 406 AGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGN 452


>gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
 gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
          Length = 521

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 238/469 (50%), Gaps = 36/469 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G IF+A+VG + DG  FI  A+ QGA A+ V +    Q          P++ +
Sbjct: 31  DSRQVKQGDIFIALVGTRADGRQFIANAVEQGAAAVFVEADKEWQGVHWI--GEVPVIAL 88

Query: 96  DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS----SFQIG 148
           +     LS  A R Y  HP     ++ +TGT+GK++ +  + Q+   +G+S    S  IG
Sbjct: 89  EQLTARLSELAGRYYA-HPSRELRLVGITGTNGKTTCSLLLAQLL--AGVSGQGCSAVIG 145

Query: 149 -------------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                        P +   S      LTTP P+ L + L  L + G +  ++E SSH L 
Sbjct: 146 TLGYGLVDKHSLTPIAQQISLLTTTGLTTPDPVALQRILRQLRTGGASSAAIEVSSHSLQ 205

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+ G+      FTNL +DH+DYH    +Y  AK  L    +P    A+   DDA+ K 
Sbjct: 206 QKRVAGLAFDTAIFTNLTQDHLDYHGDLASYGKAKAELL--FMPGLKHALFNMDDAWVKA 263

Query: 256 VMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +   AG   +    Q    ++L+ +    +     +     + +F  PL G F + N
Sbjct: 264 LAAKT-PAGVSAIGFSLQEPADVYLRDIHLHASGASAWLVSPWGEAEFHSPLLGLFNLSN 322

Query: 315 AL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLEM 371
            + V +  CI  G     VL  +  L   PGR +   V  + +  ++ VDYAHT ++LE 
Sbjct: 323 LVAVVSAACIQ-GAPLEQVLALVPHLVAAPGRMQPVVVDADVQEIQVLVDYAHTPDALEN 381

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK IR   + RI  VFGCGGDRD+ KRP+MG+IA  L+D  IVT+DNPRSEDP +I A+
Sbjct: 382 TLKAIREHQADRIWTVFGCGGDRDKTKRPLMGRIAEKLSDYVIVTNDNPRSEDPARIAAD 441

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I+ G+    G +   +R +AI  A++     D++++AGKGHE   I  +
Sbjct: 442 IVRGLNNPNGCLVLADRAQAIDFAVQQAKPGDLVLIAGKGHEDYQIFAD 490


>gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
          Length = 492

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 225/456 (49%), Gaps = 35/456 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP AIA GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   AII  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGTIKSRLFYWHGLKH--AIINVDDEYGAELIGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V Y   F     +  +H     T S +G +  F  P         L G F   N    
Sbjct: 258 LAV-YGYGFSEHADIRIVH----FTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGATAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P     + +R  AIR ++E     D++++AGKGHE 
Sbjct: 432 PAPECVEADRAAAIRYSVERAAANDIILIAGKGHEN 467


>gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 495

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 234/456 (51%), Gaps = 33/456 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  VS  S  ++ G ++VA+ G +  G  F+ +A+ +GA A V+S ++ ++   A +  
Sbjct: 34  EVTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAVA-VLSDSWGVE---AAVEH 89

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L   + R    + +S +YG+  +  +++ +TGTSGK+S A  V+   + +G  +  
Sbjct: 90  GLPALHHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAYLVEAGLKAAGRVTGL 149

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T I +    +  TTP    L    +Y   QGVT + +E SSH L  HR +GI   
Sbjct: 150 IGTVETRIGAETIVSERTTPEATELQALFAYALEQGVTDIVMEVSSHALTLHRAEGISFA 209

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA----- 260
            G FT  G DH+D+H T   YF AK +LF+     E   ++ ADDA++K ++        
Sbjct: 210 VGGFTMFGLDHLDFHPTVDEYFAAKAKLFDGRCRVE---VVNADDAWAKRLVTPDTVTYS 266

Query: 261 ---HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               NA   V S+   G F    +V + H +   ++            LPG   + NAL+
Sbjct: 267 LVDANATWSVDSITGSG-FDQSFEVTSPHGRHHGSVR-----------LPGRHNIANALL 314

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A G   A+G+     +  +     VPGR E V  ++    + VDYAH  +++  +L+ +R
Sbjct: 315 AYGCLTAVGVPVETAIAGVADCAGVPGRMELVSEDNPVHGV-VDYAHKPDAITAVLEALR 373

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            ITSG +I V G GGDRD  KR +MG  A   AD+ IVTDDNPR+EDP  +RA ++ G+ 
Sbjct: 374 PITSGSLIAVIGAGGDRDPSKRTLMGDAAARAADLVIVTDDNPRTEDPAAVRAGVLAGVG 433

Query: 438 G--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               +E  +R  AI  A+      D + + GKGHE+
Sbjct: 434 DRPHLEVADRATAIDEAVARAKPGDTIALLGKGHES 469


>gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 541

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 165/523 (31%), Positives = 249/523 (47%), Gaps = 73/523 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++  V++DSR    G +FVA+ G++ DGH F+  A+ QG   ++      L    A  
Sbjct: 24  ELEVTTVTADSRRAGPGSLFVALPGSRVDGHDFLAAAVKQGCRVVLCQPGCRLPTEKA-- 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                 L   +TR       + L G   + +  + +TGT+GK++ +  ++ + +R+G   
Sbjct: 82  -PEVLHLATADTRAAFGRLCAALRGFPAQEMVMIGITGTNGKTTASYLLEDLIRRAGGEP 140

Query: 145 FQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG  +    +   NR+     TTP P  L   L  ++  GV+HV +E SSH L+Q R+
Sbjct: 141 GVIGTVN----YRYRNRVLPATHTTPDPESLQPLLREMAEAGVSHVIMEVSSHALEQQRV 196

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDA--- 251
            GI   A  FTNL  +H+DYH   ++YF  K  LF   L   + A++ +     DDA   
Sbjct: 197 AGIAFDAALFTNLSHEHLDYHGDMESYFAGKKLLFNRYLKPGAAAVVLSGRAEQDDASLD 256

Query: 252 -----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI------------- 293
                   E+  R    GCR      +   + L +  A  N+ ++               
Sbjct: 257 CWNQRLIDELSPRVLPPGCRRRP---KAGEVRLWRCGAAGNELRLLRRRLSLAGIEAELQ 313

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S EG  +     L G+F + N L  AG+ +A+G+  A +   L      PGR E    + 
Sbjct: 314 SSEGA-WRLSSTLVGDFNLDNLLGVAGVGLALGMTPATIAAALADAAPPPGRLERF-RSR 371

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  + VDYAHT ++L  +LK +R + +GR++VVFGCGGDRD+ KRP+MG++A  LADI 
Sbjct: 372 RGVEVLVDYAHTPDALGHVLKALRRLATGRLVVVFGCGGDRDRAKRPLMGEVAAALADIV 431

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE------------------------AI 449
           ++T DNPRSE P  I A+I  G+     +  R+E                        AI
Sbjct: 432 VLTSDNPRSEAPAAIMADIQRGLATVDARRGRLESLLAAPLNRRTTCQGYDLVVSRRQAI 491

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           R  I      DV++V GKGHET  I+        +D D  RE+
Sbjct: 492 RDTIYHARSGDVVLVCGKGHETSQIIAGS----CLDFDDRREV 530


>gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
 gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
          Length = 486

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 156/479 (32%), Positives = 250/479 (52%), Gaps = 29/479 (6%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ELI    +  ++   + +++ ++ DSR I  G  F A+ G + DGH +I  A+   
Sbjct: 2   KQIQELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDAAVTA- 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
                 ++A   Q     +  +   +VV +T   ++  A+  YG     +  + +TGT+G
Sbjct: 61  -----GAAAVVCQRLPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181
           K++  + +  + +  G   +++G  ST+       R+    TTP  I L + ++ +   G
Sbjct: 116 KTTTVTLLYDLFRGLG---YKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAG 172

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +  +E SSH + Q R+ G+    G F+N+  DH+DYH+T   Y  AK +LF + LPKE
Sbjct: 173 CEYCFMEVSSHAIVQERIRGLHFTGGIFSNITHDHLDYHKTFAEYIRAK-KLFFDNLPKE 231

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           + A+I  DD   + VM +   A  + LS+     F    K+   H    + + ++G++  
Sbjct: 232 AFALINIDDRNGR-VMVQNTRATVKTLSLQSMADF--RCKILETH-PDGMELRIDGREVW 287

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             F   G F  YN L      + +G D   VL+ +  LH V GRFEFV   + G    VD
Sbjct: 288 VHFL--GRFNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRA-ADGTTAIVD 344

Query: 362 YAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAHT ++LE +L+ +  I     ++ V+ GCGGDRD+ KRP M +IA+  A  AI+T DN
Sbjct: 345 YAHTPDALEKVLQTVEEIRRPGQQLFVLCGCGGDRDKTKRPEMAQIAVKYATTAILTSDN 404

Query: 420 PRSEDPEKIRAEIIHGI-PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PR EDP+ I  +++ G+ PG  ++   +R EAIRTA  +    D+L++AGKGHET  IV
Sbjct: 405 PRHEDPDAILDDMVAGLAPGDRYLRIADRAEAIRTAAMLAKPGDILLLAGKGHETYQIV 463


>gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 502

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 244/480 (50%), Gaps = 38/480 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  + +DSR I+ G +FV + G   DGH +  QAI  GA AIV     S       +  N
Sbjct: 23  ITNLDTDSREIRPGGMFVCVPGYHVDGHDYAEQAIRNGAVAIVAERELS------GLSEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++ V +TR+ L + A+  YG   +   ++ +TGT+GK++    V +I   +   +  I
Sbjct: 77  VTLITVPDTRRILPILANAFYGDPTQRLKLIGITGTNGKTTTTHMVDKILNDARRKTGII 136

Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I + A+    TTP  I L +    + S G  +  +E SSHGLD  R+ G     
Sbjct: 137 GTLYMKIGNHAEKTLNTTPDTIQLMRYFHTMISHGGEYGVLEVSSHGLDMGRVRGCDFQT 196

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE----SPAIIYADDAYSKEVMKRAHN 262
             FTNL  DH+D+H+T ++Y N K  LF +L          A++ ADD  S    KR   
Sbjct: 197 VVFTNLSHDHLDFHKTMESYRNTKELLFAQLGNSNRDMLKKAVLNADDDASSYYAKRT-- 254

Query: 263 AGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              ++++ G Q +         H ++ CA H +     S      +    + G   +YNA
Sbjct: 255 -SAQIITYGIQNQADVRATHIHHTREGCAFHAETPWGSS------EVNLKVHGAHNIYNA 307

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A   C+  GI    + E L +   V GRF+ + T  R G + VDYAH  + L+  L++
Sbjct: 308 LAAMTTCLLEGIPLEEIRESLGQFAGVHGRFQEIQTGRRFG-VVVDYAHNPDGLKATLQS 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            + ITSG++I V GC G+RD+ KRPIM  IA   AD  + T DNP SEDPE+I AE++ G
Sbjct: 367 AKAITSGKMICVMGCRGERDRSKRPIMADIASSYADYVLFTADNPFSEDPEQIMAEMLGG 426

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +    E GN      R EAI+ A+EM   +D +++ G+GHET ++  +  +  S D DI+
Sbjct: 427 LTSR-ESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGRGHETRYVTGSRIESFS-DEDIV 484


>gi|288937143|ref|YP_003441202.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|290512566|ref|ZP_06551932.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
 gi|288891852|gb|ADC60170.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|289774907|gb|EFD82909.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
          Length = 495

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 241/471 (51%), Gaps = 33/471 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D     
Sbjct: 19  ERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAEDGEIRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y   P   L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLSQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   LS L  QG T  ++E SSHGL QHR
Sbjct: 134 LGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  ++  A  FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + 
Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251

Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQV 312
           +  +A    +    +    G++  LK     ++    TI  +    + +    L G F V
Sbjct: 252 KLPDAVAVSMEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGNGEIESRLMGAFNV 309

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAHT ++LE  
Sbjct: 310 SNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKA 368

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I
Sbjct: 369 LQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI 428

Query: 433 IHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
              + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 429 ---LAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|237729383|ref|ZP_04559864.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
 gi|226909112|gb|EEH95030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
          Length = 495

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 238/467 (50%), Gaps = 29/467 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +G +FVA++G++ DG  +IPQAIAQG  AI+  +     D     
Sbjct: 19  ERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y   P   + + G +G +   +  Q + Q S L    
Sbjct: 79  MHGVPVIYLSQLNERLSALAGRFY-HEPSEKMRLVGVTGTNGKTTTTQLLAQWSQL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L+ L++QG T  ++E SSHGL QHR
Sbjct: 134 LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLAAQGATVGAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + 
Sbjct: 194 VAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251

Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A    +    +    G+++    V    +   +  +    D +    L G F V N
Sbjct: 252 KLPDAVAVSMEDHINPNCHGRWLKAVDVKYHDSGATIRFTSSWGDGEIESRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A    +A+G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L+
Sbjct: 312 LLLALATLLALGYPLADLLKTATQLQPVCGRMEVFSAPGKT-TVVVDYAHTPDALEKALQ 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R   +G++  VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+E+P  I  +I  
Sbjct: 371 AARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEEPRAIINDI-- 428

Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            + G ++ G       R EA+  AI    + DV++VAGKGHE   IV
Sbjct: 429 -LAGMLDAGQAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHEDYQIV 474


>gi|227504688|ref|ZP_03934737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198698|gb|EEI78746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 521

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 164/478 (34%), Positives = 244/478 (51%), Gaps = 35/478 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++  S DS+ I AG +F A+ G +  G  F     A    A +++    LQ         
Sbjct: 24  VSACSLDSKAIAAGGLFAALPGTRVHGAQFAGDTEA----AAILTDEAGLQHLQEA-GER 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146
            PI+VV++ R  L L A+ +Y +HP   L V G +G S   +    ++     +G     
Sbjct: 79  RPIIVVEDIRAVLGLIAAEIY-EHPTEHLTVLGVTGTSGKTTTSYLLEAGLLHAGHKVGL 137

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG T T I+      +LTTP    L +  + +  +GVTHV +E SSH L+  R+ G +  
Sbjct: 138 IGTTGTRINREPVPTKLTTPEAPTLQELFARMRHEGVTHVVMEVSSHALELGRVRGTQFD 197

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G FTNL +DH+D+H T + YF AK  LF+      S A+I  DD + K + ++      
Sbjct: 198 VGGFTNLSQDHLDFHPTMEDYFAAKAALFDGA-QAASAAVICVDDDWGKRMAQQVAGKPL 256

Query: 266 RVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            ++S   +    + K+V +           Q V +S  G+ + F  P+PG+F + NA +A
Sbjct: 257 TLVSTTDEETAENTKQVISARQLGTEPTGAQHVELSFSGETYSFELPMPGKFNIANAALA 316

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNI 376
           AG+  A+G+D+   L  +E++  VPGR E +   SRG      VDYAH   ++  +L  +
Sbjct: 317 AGMAAAVGVDTETFLNGVERV-AVPGRMESI---SRGQDFVAVVDYAHKPAAIAAVLDTL 372

Query: 377 R---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R   + T GR+ VV G GGDRD  KRP+MG  A + AD+ +VTDDNPRSEDP  IRA ++
Sbjct: 373 RGQLSETGGRLGVVVGAGGDRDSSKRPLMGAAAAERADLVVVTDDNPRSEDPAAIRAAVM 432

Query: 434 HG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G           E G+R  AI   +E     D ++V GKGHE   IV  G++ +  D
Sbjct: 433 AGAQKASQTADIREIGSRAAAIDAVVEWAQPGDAIIVVGKGHEVGQIV--GDETLHFD 488


>gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
          Length = 488

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 158/478 (33%), Positives = 245/478 (51%), Gaps = 39/478 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ + K+  V+ D+R +  G +F+AIVG   DGH FIPQAIA+GA+ I+           
Sbjct: 19  EFTDFKVTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIAKGAQMIIAQEP------- 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
             + +  P++ V +T + ++  A + YG   +++  + VTGT+GK++V   ++++    G
Sbjct: 72  --VETTVPVVYVKDTHRAMAFLADKFYGSPSQSMKMIGVTGTNGKTTVTHLIEEVFHDLG 129

Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  IG     ++        TTP  +   K L+ +    V  VS+E SS  L Q R+ 
Sbjct: 130 EGTGLIGTLYRKVNDQVYPTTNTTPDVLTNQKTLAEMRDANVKTVSMEVSSIALVQGRVW 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--PAIIYADDAYSKEVMK 258
           GI      FTN   DH+ YH+T   Y  AK  LF ++    S   A++  DD   +E + 
Sbjct: 190 GINYDICVFTNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFSGKTAVMNIDDPVGREFID 249

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFP--------LPGE 309
                   +L+ G +    H   + A H    + I++ G +FD  +F         L GE
Sbjct: 250 YT---TSNILTYGIK----HQADIYADH----IKITIHGTEFDLHVFDEVKHVKTHLIGE 298

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F VYN+L A G   A G   A +++ L ++  V GRF+ V +N+ G  + VDYAHT + L
Sbjct: 299 FNVYNSLAAVGAAYAAGASVAEIVDSLSRVKGVKGRFQLVPSNT-GVSVIVDYAHTPDGL 357

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L+ +          + GCGGDRD  KRP M KIA+D +  AI+T+DNPR+EDP KI 
Sbjct: 358 LNVLETLNDFAEQDTYCIVGCGGDRDAQKRPQMAKIAVDNSTHAILTEDNPRTEDPHKIM 417

Query: 430 AEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +++ GI         NR EAI+ A+      D +++AGKGHE   I+  G+ K   D
Sbjct: 418 DDMLAGIDSDQATVIFNRREAIQYAVNRAKPGDAIIIAGKGHEDYQII--GKTKHHFD 473


>gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
 gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 492

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 169/511 (33%), Positives = 241/511 (47%), Gaps = 45/511 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   DFP         P+         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETDFP---------PLPCANAAGRLLHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQD----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            A+A GA       A+   D    F+       P   + + +    + A+++YG   ++ 
Sbjct: 55  AAVANGA-------AFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDDL 107

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
            +  VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L
Sbjct: 108 KVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETAHTTPAPVDVQTLL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF
Sbjct: 168 YRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                K   A+I  DD Y  E+  R     C  L+V   G   H     A       T S
Sbjct: 228 YWHGLKH--AVINTDDGYGAELAGRLKK-DCPDLAVYSYGFSEH-----ADIRITDFTAS 279

Query: 295 VEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +G +  F  P         L G F   N      L  A G     VL+ L K+    GR
Sbjct: 280 SDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGR 339

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMG 403
            + +  NS    + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG
Sbjct: 340 MDCI-MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMG 398

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVL 462
             A+  AD  +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++
Sbjct: 399 AAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDII 458

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHE    V   + + S D +I+ + L
Sbjct: 459 LIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|67922594|ref|ZP_00516100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
 gi|67855522|gb|EAM50775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
          Length = 501

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 161/501 (32%), Positives = 244/501 (48%), Gaps = 37/501 (7%)

Query: 6   LIYKDFPELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L  K    L+N LS  P        ER++  +S++S   Q G IF+ + G + DG  F  
Sbjct: 2   LTSKKLQYLLNNLSNIPSLPNHSALEREVKGISTNSHSCQLGDIFIGMPGTRVDGGEFWQ 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+  GA A ++S   + Q F    + +  +++V++     +  A+  Y    + +  V 
Sbjct: 62  SAMEVGAVAAIISPQ-AAQKFPP--KDDDCVIIVEDIITVAAQIAAAFYDYPAQQLKMVG 118

Query: 122 GTSGKSS------VASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPI 168
            T           V  F+ Q CQ+         PT+ I +       F +    TTP   
Sbjct: 119 ITGTNGKTTTTHLVEYFLNQ-CQK---------PTALIGTLYTRWPGFERTAVHTTPFAP 168

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L + L+   +    +  +E SSH L Q R+         FTNL +DH+D+H+  + YF 
Sbjct: 169 ELQEQLAEAVAANNEYCVMEVSSHALVQGRVKQCPFQVSVFTNLTQDHLDFHKDMEDYFA 228

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  LF     +E  AI+  DD Y K ++           SV       +   +    N 
Sbjct: 229 AKRLLFTPDYLQEK-AIVNLDDPYGKRLIDSFQTEQVWTYSVEDTKADFYTSNLTYQANG 287

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T++    + +F  PL G+F + N L A    + +G+D   V+E L     VPGR E 
Sbjct: 288 VTGTLTTPFGNIEFTSPLVGQFNLSNVLAAVATVLYLGLDVREVVEKLPHFLGVPGRMER 347

Query: 349 VGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           V  N +    + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP+MG+ + 
Sbjct: 348 VQINDKQDISVIVDYAHTPDSLENLLKAARPFIKGKMICVFGCGGDRDRTKRPLMGQASA 407

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVV 464
            LAD+++VT DNPR+EDP++I  +++ GIP  IE     +R +AI TAI   N  D +++
Sbjct: 408 QLADVSVVTSDNPRTEDPQRILEDVLTGIPETIEPLVISDRAKAINTAILQANPGDGVLI 467

Query: 465 AGKGHETVHIVTNGEKKMSVD 485
           AGKGHE   I+  G +K+  D
Sbjct: 468 AGKGHEDYQIL--GTEKIHFD 486


>gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
 gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
          Length = 921

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 176/503 (34%), Positives = 261/503 (51%), Gaps = 30/503 (5%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P L + L    +Q     + +++ DSR   +G +F+AI G++ DG  +IPQAIAQG  A+
Sbjct: 430 PNLSDLLGALGIQAPSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIPQAIAQGVSAV 489

Query: 72  VVSSAYSLQDFS--ATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           +  +    QD +    IR +   PI+ +DN    LS  A   Y +  E +  + VTGT+G
Sbjct: 490 LAEA----QDVATHGEIRESHGIPIIYIDNLNAKLSKLAGHFYHQPAEKLKLIGVTGTNG 545

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181
           K++    + Q  Q  G  S  +G   T+ +   D+ +    TT S + +   L  L +QG
Sbjct: 546 KTTTTQLLAQWAQGLGEISAVMG---TVGNGLLDHVVPAMNTTGSAVDIQLELQQLLNQG 602

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            T  ++E SSHGL Q R+  +  +A  FTNL RDH+DYH     Y  AK  LF      E
Sbjct: 603 ATLTAMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEEAKWLLFSTHHSGE 662

Query: 242 SPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              II ADDA  ++ + R  +A        L   +QG+F+   ++        +  S   
Sbjct: 663 K--IINADDAVGQKWLSRLPDAVAVTMENTLPQNWQGRFVKTTRINYHDAGATIHFSSSW 720

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     PL G F V N L A    +A+G     V+     L  V GR E    N+R   
Sbjct: 721 GEGIIESPLMGAFNVSNLLCALATLLALGYPLNAVINASSSLTPVCGRMEVFSANNRP-T 779

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG +A +LAD  ++TD
Sbjct: 780 VIVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAVAEELADKVVITD 839

Query: 418 DNPRSEDPEKIRAEIIHGI--PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE+P+ I  +I+ G+  PG  I    R EA+   I   +  D+++VAGKGHE   +
Sbjct: 840 DNPRSEEPQAIIQDILSGLMDPGRAIAIEGRAEAVTNVIMQADTNDMILVAGKGHEDYQL 899

Query: 475 VTNGEKKMSV-DCDIIREILGLI 496
           V  G +++   D   +  +LG+I
Sbjct: 900 V--GSRRLDYSDRLTVARLLGVI 920


>gi|290969167|ref|ZP_06560692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780673|gb|EFD93276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 499

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 245/469 (52%), Gaps = 34/469 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +++DSR +Q G +FV + G   DG  F  QA A+GA A++ +    L D +  I  
Sbjct: 24  QVRGITADSRDVQPGDLFVCVAGAHVDGKTFAAQAAAKGAVAVLTTEPLPLPDGTVQIIV 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                 V+    F   +  +        ++ VTGT+GK++    +  I + +G   + +G
Sbjct: 84  PDIHAAVEEMVPFFYDYPGKKM-----RMIGVTGTNGKTTTTHIIAHILRTAG---YHVG 135

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TI +   D  L    TTP  + L + L+ + ++G+THV +E SSH L   R+ GI+ 
Sbjct: 136 VLGTIHALMDDLELPIHNTTPDVVELQRFLAQMYARGITHVVMEVSSHALALQRVAGIEY 195

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKR 259
               FTNL +DH+D+H+T + Y  AK +LF  L     + K   A++  DD +S  V+ R
Sbjct: 196 DTAVFTNLTQDHLDFHKTMENYAAAKAKLFRGLTAGTPVKKGKTAVLNRDDPWS--VLMR 253

Query: 260 AHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                  VL+ G +     +  HL+ V   H+   VT      D      + G F VYN 
Sbjct: 254 KACGTAEVLTYGTEREASLRGTHLQ-VALKHSAFDVTGPF--GDMHLQMNITGLFNVYNT 310

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G   A G+D   + + ++  H VPGRFE V        I VDY+HT +SLE  L  
Sbjct: 311 LAAIGAAYAEGVDPETIGKAMQTFHAVPGRFELVEAGQDFA-IVVDYSHTPDSLEKALTT 369

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R +   +IIVVFGCGGDRD+ KRPIMG+IA   ADI +VT DNPRSE+PE I AE+  G
Sbjct: 370 ARAMNPHKIIVVFGCGGDRDRTKRPIMGRIAATHADIPVVTSDNPRSENPEAIVAEVAAG 429

Query: 436 IPGFIEKGNRIEAIR-------TAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +   ++ G + E +         A+ + N  D++++AGKGHET  I+ +
Sbjct: 430 VKEALQPGQQYEVLTDRRRAIRRAVALANTGDMVLIAGKGHETYQILKD 478


>gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 512

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 165/486 (33%), Positives = 241/486 (49%), Gaps = 50/486 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+ DSR ++ G+ FVA+ G K DG  F+P+A+ +GA  +V                
Sbjct: 43  RVCGVTHDSREVEPGFAFVAVPGFKRDGVEFVPEALRRGAALVVAEREVP---------- 92

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P+ VV + R  L+  A   +G HP     +  VTGT+GK++    +  +         
Sbjct: 93  EAPVAVVPDARAALAALACAFHG-HPSRRMEVYGVTGTNGKTTTCYALHAVLA-GAFGEE 150

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G  +T    A   R     TTP    +  AL+ +  +GV  V++E SSHG+   R++G
Sbjct: 151 RCGLMTTAEVVAGGERRPAVRTTPEATEVQAALAGMRERGVERVAMEVSSHGIALRRVEG 210

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I+     FTNL RDH+D H T + Y+  K RLF   L    P +  ADDA+ + +     
Sbjct: 211 IRFAGAVFTNLSRDHLDLHGTMEEYYRTKRRLF---LWARGPKLSNADDAWGRRLAGEVE 267

Query: 262 NAGCRVLSVGYQGKFIHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                  +VG   +   ++   A    +  + +  + +E        PL G++ V NA  
Sbjct: 268 GVRTFGSAVGADYRIEGVRPSGAGTRFVLRRGEEALRIE-------VPLFGDYNVQNAAG 320

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           AA L + +G+    V   L  +  VPGRFE VG    G  + VDYAHT   LE +L+  R
Sbjct: 321 AAALALELGVPGETVARALRGMPQVPGRFERVGGP--GFEVIVDYAHTDVGLEAVLRVAR 378

Query: 378 TIT----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +      GR+I VFG  G+RD  KRP+MG++A  LAD  I+T D+  SEDPEKI  E+ 
Sbjct: 379 EVARRGRPGRVICVFGAAGERDGAKRPLMGRVASRLADRGIITTDDAYSEDPEKIAREVA 438

Query: 434 HGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G    +E G      +R EAIR A+    + DV+VVAGKGHE V  +  G+     D  
Sbjct: 439 AG----VEDGRLEIVLDRREAIRRALSEAGEGDVVVVAGKGHERVQHLPWGDVPFH-DAT 493

Query: 488 IIREIL 493
           +IREIL
Sbjct: 494 VIREIL 499


>gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
 gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
          Length = 505

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 171/495 (34%), Positives = 240/495 (48%), Gaps = 62/495 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR ++ G +F A+ G K DG  F+  A+  GA A+V        D    +  
Sbjct: 22  EITSLCYDSRQVRPGALFFALRGVKSDGTEFVESAVKGGAVAVVA-------DRPCAVAG 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
            T I V D  R+ +SL A+  YG     I  V  T       +   ++ I +++G+ +  
Sbjct: 75  VTCIEVPD-PRRAMSLMAALFYGVPTAGIPLVGITGTNGKTTTTYLMEGIMEQAGIPTAV 133

Query: 147 IGPTS---TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +G  S     +S    N  TTP  + L + L  L  QG     +E SSH L+Q R DG  
Sbjct: 134 LGTISYRFGATSIPAPN--TTPESVDLQQILRDLVDQGAKGAVMEVSSHSLEQRRADGCL 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP---AIIYADDAYSKEVMK 258
                FTNL RDH+DYH   ++Y+ +K+RLF +LL    E P   A++  DD Y   +  
Sbjct: 192 FDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTDLLAPTGEKPLRRAVVNLDDPYGARIAA 251

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---------KDFDFLFPLPGE 309
            A      VL+    G         A     +V  SV G          + D    L G 
Sbjct: 252 EAAAP---VLTYAAAGP--------ADLTVAEVEFSVHGIRCRLNSPVGEIDIDSDLLGR 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F +YN L A G  +A+GI    +   +     VPGR E V  N +G  + VDYAHT ++L
Sbjct: 301 FNLYNILGAVGAGLALGIPKDAIEAGIAGHKKVPGRLERV-PNDQGIIVLVDYAHTGDAL 359

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L  I  + + RII +FGCGGDRD+GKRP+MG+IA   +D+AIVT DNPR+E+P+ I 
Sbjct: 360 ENVLSTIAELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAIVTSDNPRTEEPKAIL 419

Query: 430 AEIIHGIP--------------GFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +I  GI               G  EKG     +R  A+R AI      D++++AGKGHE
Sbjct: 420 DDIRAGITPLRLKEYSLEELEGGLREKGFATIESRRTAVRAAIMAARPGDIVLLAGKGHE 479

Query: 471 TVHIVTNGEKKMSVD 485
              IV  G +K   D
Sbjct: 480 DYQIV--GTEKFHFD 492


>gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
 gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
          Length = 495

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 235/478 (49%), Gaps = 53/478 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  + +DSR +  G +F+ + G+  DGH + PQA A+GA A VV     L       
Sbjct: 20  DTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYAPQAAAKGAVAFVVERELEL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
             + P L+V ++R  +++ A   YG HP N L + G +G +   +    ++QI   +  +
Sbjct: 73  --DAPQLIVKDSRLAMAVLADHFYG-HPSNALHLIGVTGTNGKTTTTYLIEQILNDNDRN 129

Query: 144 SFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           S  IG         SF      TTP  + L + LS +  +G  + ++E SSH L+Q R+ 
Sbjct: 130 SGVIGTVEMRYAGKSFPMSG--TTPEALQLQQYLSDMRKEGTAYCAIEVSSHALEQGRVK 187

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYS 253
           G +     FTNL +DH+DYH T + Y  AK   F  L           + A++  DD  S
Sbjct: 188 GCRFRTAVFTNLTQDHLDYHGTMEKYAAAKGLFFSRLGNEYAAKAEDRAYAVLNVDDPVS 247

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLF 304
           ++  K        V++ G            A      + IS +G  F         D   
Sbjct: 248 EQFAKLT---AAEVITYGIDNH--------ADVRASNIRISAQGTTFRVSTFRGKTDIAL 296

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F VYNAL A    +  G+    +   LE +  VPGR E V        + VDYAH
Sbjct: 297 QMVGKFNVYNALAAISAALIEGVALERIKASLEAVPGVPGRVESVQAGQEFA-VVVDYAH 355

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T + LE +L+ ++ +   RII VFGCGGDRD+ KRPIMG IA   AD  +VT DNPR+ED
Sbjct: 356 TPDGLENVLRAVKELAPPRIICVFGCGGDRDRTKRPIMGSIAARYADYVLVTSDNPRTED 415

Query: 425 PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           P+ I  +I  G+         +  K +R  AI  A+EM +  DV+++AGKGHET  I+
Sbjct: 416 PDLILKDIEAGLLKDGITSDRYELKVDRRAAIEKAVEMASPGDVVLIAGKGHETYQII 473


>gi|152968670|ref|YP_001333779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150953519|gb|ABR75549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 495

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 241/472 (51%), Gaps = 35/472 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D     
Sbjct: 19  ERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y   P   L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLSQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   LS L  QG T  ++E SSHGL QHR
Sbjct: 134 LGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  ++  A  FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + 
Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251

Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQ 311
           +  +A    +    +    G++  LK     ++    TI   S  GK  +    L G F 
Sbjct: 252 KLPDAVAVSMEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGKG-EIESRLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLADLLKSAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I   + G ++ G       R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 428 I---LAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|239501973|ref|ZP_04661283.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           AB900]
          Length = 499

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 51/473 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           QW  +  +  S DSR ++ G IF+A+      E    F   A+A GA A++  +   + +
Sbjct: 16  QWPRQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLY----GKHPENILAVTGTSGKSSVASFV---- 133
                       V  + R+ +  +  R      G  P  I+AVTGT+GK++++  +    
Sbjct: 76  E----------WVCPDVRQRMGEWQKRYLQQADGVKPLRIIAVTGTNGKTTISRLIAELI 125

Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EAS
Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DD
Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304
           A +  ++  A N   +   + Y      L +  A +    ++ S+ G  F+ +       
Sbjct: 238 AQADLMINSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSQQGSFA 292

Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G F V N + A       G D   ++  + KL   PGR + +  + R     VD
Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR
Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +EDPE+I A++  GI        E  +R EAI+   E     D++V+AGKGHE
Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463


>gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 498

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 245/465 (52%), Gaps = 36/465 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           +W  +       DSR +QAG IF+A+  +   E    F   A+ +GA A+V  +  +L +
Sbjct: 16  EWMAQPFQGFVLDSRKVQAGQIFIALTSLSQPEKTEQFAQIALDKGALAVVSETELALAN 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             + +  N   L+    ++FL L  S++    P  ILAVTGT+GK++++  V ++    G
Sbjct: 76  --SIVVPNVRHLMGGWQKQFL-LATSQV---QPARILAVTGTNGKTTISRLVAELLMLQG 129

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            S   +G T   I    + +  TT   ++L  AL   + QG    S+EASSHGL+Q RL 
Sbjct: 130 KSCAVMGTTGNGILPNLEASSHTTLDALHLQNALHSYAKQGAEFASIEASSHGLEQGRLA 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G ++   +++NL RDH+DYH T + Y  AK RLF+   P    A+I  DD ++  +++ A
Sbjct: 190 GSEIEIAAYSNLSRDHLDYHGTLEVYAEAKSRLFQ--FPSLKVAVINLDDEHAGVMIQAA 247

Query: 261 HN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGE 309
            N  A  ++L+        +L K         +  S+ G +F             PL G 
Sbjct: 248 QNNPAQPKILTYSTTQPADYLVK--------NIQYSLTGANFSLCTAQAEYQVQNPLLGH 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F + N + +  +    G D A V+    +L   PGR + +  ++R     VDYAHT ++L
Sbjct: 300 FNIENLVASLIMVEQAGFDLADVVATTAQLKGAPGRMQVIRDDAR--LFVVDYAHTPDAL 357

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L  ++     ++  VFGCGGDRD+GKRP+M + AL+ AD+ ++T DNPR+E+PE+I 
Sbjct: 358 VQVLSTLKRHVEQQLWAVFGCGGDRDRGKRPLMTQAALNGADVVLLTSDNPRTENPEQIF 417

Query: 430 AEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           A++  GI        E  +R EAI+ A++     D++V+AGKGHE
Sbjct: 418 ADMKAGIDFSNRVVHEIHDRREAIKFAVQQAQAGDIVVIAGKGHE 462


>gi|300722054|ref|YP_003711334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628551|emb|CBJ89123.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 495

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 247/497 (49%), Gaps = 22/497 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L + L+++ +   E  + E++ DSR   AG +FVA+ G++ DG  +IPQAIAQG  A++ 
Sbjct: 6   LRDLLALWGIDIPELPLREMTLDSRKAAAGDLFVAVQGHQTDGRKYIPQAIAQGVAAVIA 65

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +       +       P++ +D+    LS  A   Y +HP N L + G +G +   +  
Sbjct: 66  EAKGKAGHGTIQKVHGVPVIYLDDLNNKLSKLAGEFY-QHPGNKLKLVGVTGTNGKTTTT 124

Query: 134 QQICQRS---GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           Q + Q S   G +S  +G     +      +  TT S + +   L  L +Q  T  ++E 
Sbjct: 125 QLLAQWSQGFGETSAVMGTVGNGLLGMVVPSENTTGSAVDIQLDLQQLVNQKATFAAMEV 184

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL Q R+  +   A  FTNL RDH+DYH     Y NAK  LF     K+   II AD
Sbjct: 185 SSHGLIQGRVAALPFQAVVFTNLSRDHLDYHGDMDHYENAKWMLFSNHDVKQK--IINAD 242

Query: 250 DAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           DA  ++ + R   A        L   +QG+++   +V        +  +          P
Sbjct: 243 DAVGQKWLSRLPEAVAVTMENCLPENWQGRWLLANEVHYHDKGASIAFTSCWGSGTLNSP 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F V N L+A    +++      +L     L  V GR E      R   + VDYAHT
Sbjct: 303 LMGAFNVSNLLLALATLLSLEYPLEKLLATASCLEPVCGRMEVFAAEGRP-TVVVDYAHT 361

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L   R    G++  VFGCGGDRD+GKRP+MG +A   AD  IVTDDNPRSE+P
Sbjct: 362 PDALEKALSAARLHCKGQLWCVFGCGGDRDKGKRPLMGGVAELGADRVIVTDDNPRSEEP 421

Query: 426 EKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
             I A+I+    GF++ G       R+EA+ +A+    + DV++VAGKGHE   +V N  
Sbjct: 422 HSIVADILK---GFVDPGRAMTIHGRVEAVTSAVMQATEDDVILVAGKGHEDYQLVGNRR 478

Query: 480 KKMSVDCDIIREILGLI 496
              S    + R +LG+I
Sbjct: 479 LDYSDRLTVAR-LLGVI 494


>gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
 gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
          Length = 458

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 242/471 (51%), Gaps = 34/471 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTP 91
           + +DSR ++ G  F+AI     DGH +I QAIA GA  I+    +Y ++           
Sbjct: 5   LKTDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGATKIIAEHGSYKVE----------- 53

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            ++V++TR++L  +    Y    ++I  + +TGT+GK++      QI +   +    +  
Sbjct: 54  TIIVESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILK---MLKKNVAY 110

Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             TI  +  D +     TTP    L   L      GV +  +E SSH LD+ R+ G++  
Sbjct: 111 MGTIGFYYGDVKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFD 170

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +FTNL +DH+DYH+T + Y NAK  LF +    +  AII  DD + +  +  ++N   
Sbjct: 171 EVAFTNLTQDHLDYHKTLENYANAKRILFTKT-RNDKIAIINGDDEHYQHFVLESNNN-- 227

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             + +G     + + ++   H            ++     + G + +YN L+A  L   +
Sbjct: 228 --IIIGQHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKL 285

Query: 326 GIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           G+    +L   +KL    GR E +  GTNS    I+VDYAHT +++  +LK+     +GR
Sbjct: 286 GVKIEDILALNDKLKAPAGRMELLKYGTNS----IFVDYAHTPDAVINVLKSAEEFKNGR 341

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIE 441
           II + GCGGDRD  KRPIMGK AL+ +D  I T DNPRSEDP+ I  +I +G+ G  F  
Sbjct: 342 IITIIGCGGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEI 401

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + +R +AI   ++ L   D+L++ GKGHE   I   G+   S   ++++ I
Sbjct: 402 EVDRQKAIIKGMQQLKHNDILMILGKGHEDYQITKTGKHHFSDQEEVMKYI 452


>gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 492

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 224/456 (49%), Gaps = 35/456 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP AIA GA       A+   D    F        
Sbjct: 28  SDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGA-------AFVFWDDDGKFEWNPEWEV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   ++  +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRST 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V Y   F     +  +H     T S +G +  F  P         L G F   N    
Sbjct: 258 LAV-YSYGFSEHADIRIVH----FTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P     + +R  AIR A+E     D++++AGKGHE 
Sbjct: 432 PAPECVEADRATAIRYAVERAASSDIILIAGKGHEN 467


>gi|258593043|emb|CBE69354.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [NC10
           bacterium 'Dutch sediment']
          Length = 504

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 240/469 (51%), Gaps = 32/469 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++E+  DSR ++ G +FV I G + DGH FI  A A GA A +V       D +     
Sbjct: 22  EVHEIRYDSRQVKPGDLFVCIGGFRRDGHDFIQAAWAAGAVAALVERT----DLTEAALQ 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
              ++ V NTR+ L+  A R YG HP   L++ G +G +   +    V+ + + +G    
Sbjct: 78  GGTVVKVANTRQSLAAVACRFYG-HPSRSLSMVGVTGTNGKTTTTYLVESVLRCAG---H 133

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           Q+G   TI     +  L    TTP    L   L  ++      V +E SSH L  HR+DG
Sbjct: 134 QVGLIGTIGYRCNELELEAARTTPESCDLQALLERMARLRADSVVMEVSSHALALHRVDG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
            +     FTNL +DH+D+H T +AY +AK+ +FE L        E  A++  DD  +   
Sbjct: 194 CEFDVAVFTNLTQDHLDFHGTMEAYRSAKLSMFEGLGVGSTKTTEKAAVVNLDDPAADLF 253

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +        R  S   +G   + +  V    +  +  +           PL G + + N 
Sbjct: 254 LGATR---VRRYSYSVEGPADLSVADVKMGPDGIRCRLQTPWGTTAIRSPLLGRYNLSNI 310

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L AA   + +G D + V + +  LH VPGR E V T  +   + VDYAHT ++L  +L+ 
Sbjct: 311 LAAAATGLHLGADLSAVADGIAALHHVPGRCERVETG-QAFSVMVDYAHTPDALRRVLRM 369

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    GR+IV+FGCGG+RD+GKRP+MG+ AL+LAD  ++T DNPR EDP +I  EI  G
Sbjct: 370 ARQCCPGRLIVLFGCGGERDRGKRPLMGEAALELADFTVITSDNPRGEDPHQIIEEIETG 429

Query: 436 I-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                    G++   +R  AIR A+ +  + D++V+AGKGHET  I+ +
Sbjct: 430 AKKVWGQGKGYVTILDRGMAIREALSLAGRGDMVVIAGKGHETYQILRD 478


>gi|329895274|ref|ZP_08270916.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
 gi|328922396|gb|EGG29739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
          Length = 487

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 149/457 (32%), Positives = 236/457 (51%), Gaps = 19/457 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+ KI  + +DSR    G +F+A+ G+   G  F+  A+A+GA  I+     +L D    
Sbjct: 20  RDAKITGIVTDSRAASLGSLFIAVPGHTHRGVDFVSDAVARGASGIIADEEMNLPD---- 75

Query: 86  IRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  ++VV + R    + A R +   K     LAVTGT+GK+S    + Q+      +
Sbjct: 76  ---HIGLVVVSDVRAISGIVAMRFFETDKQELRTLAVTGTNGKTSTVQLLAQLLGELDQA 132

Query: 144 SFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  +G       + F+  +  TTP  + + + L+  ++Q V   ++EASSHGL QHRL G
Sbjct: 133 AATVGTLGFQLPTGFSPSSN-TTPDVVEIHRFLASAAAQNVRWAALEASSHGLVQHRLTG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + +   + TN+ +DH+DYH T   Y  AK ++   L      A++   D      ++   
Sbjct: 192 LNITTAAITNITQDHLDYHGTMTEYIAAKAQI---LALSGLRAVVLDLDNPEVRALRPQV 248

Query: 262 NAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            A  +VL  ++G       +       +    T+ ++G ++    PL GEF + N L A 
Sbjct: 249 PANVQVLGFTLGEVADADAVVVAQYDADGTTATVRLDGFEYRLRLPLVGEFYLRNTLTAL 308

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +  A G+    ++    +L  VPGR E VG +S    +YVDYAHT +++  +L+ +R  
Sbjct: 309 FMLRAEGLRFEDLVAAAGRLRGVPGRLERVGLDSDVA-VYVDYAHTPDAIARVLQVLRPT 367

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-G 438
               + VVFGCGGDRD+ KRP+MG+ A + AD  ++T DNPR+EDP KI  +I  G    
Sbjct: 368 VKNDLWVVFGCGGDRDKSKRPLMGRAAAEGADWVVLTSDNPRAEDPSKILDDIQVGCAHA 427

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +   +R  AI +AI   +  D LV+AGKGHET  I+
Sbjct: 428 RLVIEDRAVAIESAIMAASPGDTLVIAGKGHETEQII 464


>gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4]
 gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella loihica PV-4]
          Length = 488

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 153/464 (32%), Positives = 238/464 (51%), Gaps = 15/464 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR I  G +FVA+ G++ DG  ++  A++QGA A ++ +    +    +  + 
Sbjct: 19  LSHLTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAVAALIHTDDPAEHGKVSQDNG 78

Query: 90  TPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             I      R+ LS  AS+LY  G+    ++ VTGT+GK+SV   + Q+    G  +  +
Sbjct: 79  LRIYFFQLQRQ-LSALASQLYVLGRDRIKLIGVTGTNGKTSVTQLIAQLSDGLGKPAAVM 137

Query: 148 GPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           G       + Q  D+  TT  PI + + L     QG    ++E SSHGL Q R+D +   
Sbjct: 138 GTLGN-GLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCAMEVSSHGLVQGRVDAVPFD 196

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH +  AY  AK RLF       S  +I  DD   ++ ++     G 
Sbjct: 197 VAVFTNLSRDHLDYHGSMDAYGAAKQRLFR--FSSLSHGLINLDDPVGRQWIQDKRCKGL 254

Query: 266 RVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              S+ G +G  I+ K+V         T+     +     PL G F + N + A G    
Sbjct: 255 VGFSIQGQEGAAIYTKEVKQHSQGVSATLVWPEGEAKIDSPLLGIFNLSNLVAALGALYL 314

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G   A +L  +  L  V GR E   T   G  + VDYAHT +++E  L+ +R    G++
Sbjct: 315 SGYAMAQLLTQVSSLKPVAGRMERF-TTQEGVTLVVDYAHTPDAIEQALRALRGHCRGKL 373

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF-IE 441
             VFGCGGDRD+GKRP+M + A + AD  +VT DN RSEDP  I  +++ G+  P   + 
Sbjct: 374 WCVFGCGGDRDKGKRPLMARAAEENADCVMVTSDNARSEDPMAIIQDVLAGLNKPQIALT 433

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           + +R +AIR  + + +  D++++AGKGHET   +    K++  D
Sbjct: 434 QVDRQQAIREVVTLASNGDLILLAGKGHETYQEIAG--KRLDYD 475


>gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 496

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 231/458 (50%), Gaps = 29/458 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++DSR ++ G +FV I G   D H FIP A+ +GA A+V    ++       + + 
Sbjct: 18  VTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVVTQRPWA-------VPTG 70

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               VV + R  LS  A R YG HP   L    VTGT+GK++ A  V+ I + +G +   
Sbjct: 71  IGAAVVPDARLALSALADRFYG-HPSRALRMVGVTGTNGKTTTAFLVEAIARTAGKAMGV 129

Query: 147 IGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           IG    +         +  TTP P  + + L+ +  +G     +E SSH L+Q R D  +
Sbjct: 130 IGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVMEVSSHALEQRRTDHCR 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL  +H+DYH   + Y+ AK RLF  L P  + A++  DD Y + + +    A
Sbjct: 190 FDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRGLQPGAA-AVVNIDDPYGRRLAEEI-PA 247

Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGL 321
           G R L+ G+ +G  I  + V       +  +     + D   P L G + V NA+ A G 
Sbjct: 248 GVRTLTYGFSEGADIRAEDVHLTGPGARYRLITPVGEADVEAPHLFGTYNVSNAMAAVGA 307

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379
            +A+G      +  L      PGRFE +    +   + VDYAHT +  E +L ++  I  
Sbjct: 308 GLALGFSLQDAVAALGTAKGAPGRFERI-DEGQDFTVVVDYAHTPDGFEKLLSDVARIKE 366

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
              R+I+VFG  G RD  KRP MG+IA +  D+ ++T+++PR+ED  +I  +I  G+   
Sbjct: 367 PGSRVIMVFGSAGQRDPSKRPDMGRIAGEYCDVLVLTEEDPRTEDAMEIARQIASGVARD 426

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 IE  +R+EAIR AI M    D++++ GKG ET
Sbjct: 427 EVEIHLIE--DRVEAIREAIRMARTGDIVLITGKGQET 462


>gi|260556908|ref|ZP_05829125.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
 gi|260409514|gb|EEX02815.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
          Length = 499

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 51/473 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           QW  +     S DSR ++ G IF+A+      E    F   A+A GA A++  +   + +
Sbjct: 16  QWPRQPFYGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133
                       V  + R+ +  +  R   +     P  I+AVTGT+GK++++  +    
Sbjct: 76  E----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELI 125

Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EAS
Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DD
Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304
           A++  ++K A N   +   + Y      L +  A +    ++ S+ G  F  +       
Sbjct: 238 AHADLMIKSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFHLVSQQGSFA 292

Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G F V N + A       G D   ++  + KL   PGR + +  + R     VD
Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR
Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +EDPE+I A++  GI        E  +R EAI+   E     D++V+AGKGHE
Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463


>gi|238893065|ref|YP_002917799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238545381|dbj|BAH61732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 495

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 241/472 (51%), Gaps = 35/472 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D     
Sbjct: 19  ERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y   P   L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLSQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   LS L  QG T  ++E SSHGL QHR
Sbjct: 134 LGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  ++  A  FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + 
Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251

Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQ 311
           +  +A    +    +    G++  LK     ++    TI   S  GK  +    L G F 
Sbjct: 252 KLPDAVAVSMEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGKG-EIESRLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I   + G ++ G       R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 428 I---LAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|188532897|ref|YP_001906694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
 gi|188027939|emb|CAO95796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
          Length = 495

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 161/486 (33%), Positives = 240/486 (49%), Gaps = 30/486 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +G +FVAI G+  DG  FIPQAIAQG  A++  +    +D     
Sbjct: 19  ERALREMTLDSRVAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIVE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y + P   L + G +G +   +  Q + Q + L    
Sbjct: 79  THGVPVIYLAQLSQRLSALAGRFY-QQPGEKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G T  +     +           TT S + +   L+ L  +G +  ++E SSHGL QHR
Sbjct: 134 LGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLAAMEISSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A +FTNL RDH+DYH     Y  AK  LF E   +   AII ADD   +  ++
Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINADDKVGRRWLE 251

Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A        L  G  G+++   KV       +V  S    + D    L G F V N
Sbjct: 252 KLPDAVAVTMENHLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDIDSRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +++    A +     +L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLSLDYPLAALTATASQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALT 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSEDP  I ++I+ 
Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQCADVVVITDDNPRSEDPAAIVSDILS 430

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           G+   ++ G       R +A+   +    + D+++VAGKGHE   I+ +     S D D 
Sbjct: 431 GL---LDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-DRDT 486

Query: 489 IREILG 494
           +  +LG
Sbjct: 487 VARLLG 492


>gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris]
          Length = 495

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 223/457 (48%), Gaps = 23/457 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+ +++ +  DSR ++ G  FVAI G    G  F  QA+A GA AI+         F   
Sbjct: 18  RDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAIL---------FEPP 68

Query: 86  IRSNTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139
             ++ P+    + V   R  L + A   +G   +   ++ VTGT+GK+S    + Q    
Sbjct: 69  APADLPVPADAIAVPGLRARLGVLADHFHGAPSQAMRMIGVTGTNGKTSTVQLLAQALTL 128

Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G  +  IG     +   A     TTP  +     L+ L   G   V++E SSH LDQ R
Sbjct: 129 LGTPTGTIGTLGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVSSHALDQGR 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +D ++     FTNL RDH+DYH     Y  AK +LF     +   A++  DDA+ + +  
Sbjct: 189 VDAVQFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLRA--AVVNLDDAFGRTLFA 246

Query: 259 RAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
               A     V S    G  +  + +   H+  Q T+ +         PL G F V N L
Sbjct: 247 ALDPALHAIGVSSRAQAGATVQAQDLQLDHHGIQFTLHIGEAAHPVRSPLLGRFNVDNLL 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             AG   A+ I  A + E L +L  + GR   +G       + VDYAHT ++LE  L ++
Sbjct: 307 AVAGALHALDIAPAQIAEVLGRLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALTSL 366

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G 
Sbjct: 367 RSHAQDRLICVFGCGGERDTGKRPQMAAIAEVTADVAIVTDDNPRGEDGDVIVADILRGF 426

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                 I + +R  AI  AI M    D++++AGKGHE
Sbjct: 427 ARPDAAIVQRDRAAAIHQAISMAGADDIVLIAGKGHE 463


>gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase
           [Alistipes shahii WAL 8301]
          Length = 484

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 239/453 (52%), Gaps = 32/453 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G  F A+ G + DGH +IP A+ +GA AIV       +   A        ++V
Sbjct: 30  DSRAVKPGDCFFAVPGTQSDGHDYIPIAVEKGAAAIVC------ERMPADAAEGVAYVLV 83

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            ++   ++  A+  Y  +P     ++ +TGT+GK++ A+ +  + +  G   ++ G  ST
Sbjct: 84  GDSAGAMADMAAAFY-DYPSRELKLVGITGTNGKTTTATLLYDLVRAMG---YKAGLIST 139

Query: 153 ISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           +  +  D R      TTP  I L   +  ++  G  +  +E SSH + Q R  G+    G
Sbjct: 140 VV-YKIDGREVEATHTTPDSIRLNAMMREMADAGCAYCFMECSSHAIVQERTRGLDFAGG 198

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            F+N+  DH+DYH+T   Y  AK +LF + LPK + A+  ADD   + VM +   A    
Sbjct: 199 IFSNITHDHLDYHKTFAEYIRAK-KLFFDGLPKGAFALTNADDRNGR-VMVQNTAAAVSA 256

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+     F    K+  +H    + + ++G++      L G F  YN L   G    +G+
Sbjct: 257 YSLRAMADF--RCKIVEMH-LDGMLLRIDGQEL--WVGLLGRFNAYNLLAVYGAAALLGL 311

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR-II 385
           +   VL  L  LH V GRFE +   + G    VDYAHT ++LE +++ I  I T G+ +I
Sbjct: 312 NRGEVLRVLSMLHAVSGRFEKI-RAANGTTAIVDYAHTPDALENVIQTIEEIRTPGQQLI 370

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PG--FIEK 442
           VV GCGGDRD+ KRP M  IA+  A  A+ T DNPR E PE I  +++ G+ PG  ++  
Sbjct: 371 VVCGCGGDRDRTKRPEMAAIAVKYATTAVFTSDNPRHESPEAILDDMVAGLEPGARYLRI 430

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +R EAIRTA+ +    D+++VAGKGHET  IV
Sbjct: 431 ADRAEAIRTAVMLSRPGDIILVAGKGHETYQIV 463


>gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
 gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
          Length = 496

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 233/473 (49%), Gaps = 63/473 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V +DSR + +  +FVA+ G   +G  ++     +G    VV + Y  +   A+  ++  
Sbjct: 26  QVKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEKGCRYAVVPT-YVAKGLIASNSTDLN 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-----SFQ 146
           I+  D+    LS    +  G  P +++ VTGT+GKSSV+ ++ Q+    GLS     +F 
Sbjct: 85  IIGSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKSSVSYYIAQLADAMGLSGAIIGTFG 144

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +G  + + S  Q    TTP  + + K L+  +  GV  V+ EASSH LDQ R+ GI++  
Sbjct: 145 VGKLNNLESAKQ----TTPDVLTMLKTLAQFNQDGVDLVAFEASSHALDQDRVAGIEIDT 200

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFE-------ELLPKESPAIIYADDAY------- 252
             FTNL +DH+DYH T ++Y  AK +LF            K       A+D+        
Sbjct: 201 AVFTNLTQDHLDYHGTMESYATAKRKLFRLDTLKHAVFCSKSDYCNFMAEDSKGDKSYYG 260

Query: 253 ---SKEVMKRA---HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              S + + R    H+ GC  L +   G +                 SVE        PL
Sbjct: 261 ERPSDDFVIRDVTYHSLGCSFLLLTKSGHY-----------------SVE-------LPL 296

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363
            GEF V NA+ A      +  D   ++  L  L   PGR E V T S G  +    VDYA
Sbjct: 297 MGEFNVDNAVAALASLWPLFDDKVALISSLTSLKGAPGRMERV-TLSEGANVPVVLVDYA 355

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L + LK +   + G I  VFGCGGDRD+GKRP M + ALDLAD  ++T DNPRSE
Sbjct: 356 HTPDALSVALKALAVHSKGPITCVFGCGGDRDKGKRPEMMRAALDLADKVVLTTDNPRSE 415

Query: 424 DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            P +I  + + G+        I   +R  AI  AI   +  ++++VAGKGHET
Sbjct: 416 IPSEIMQDALSGVAECERQRVILDEDRRSAIEFAIATASINEIVLVAGKGHET 468


>gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
 gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
          Length = 506

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 245/498 (49%), Gaps = 22/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+ K    + N + I   +  +  +  + ++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLRELLAK----IANIVEIPSPEGLDVTVTGICTNSHACQPGDLFIGMPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENIL 118
             AIA GA A ++S   + +     +   T + V+  D+     +  A+  Y  +P   L
Sbjct: 57  ESAIASGAVAAIISPQAAAKHPPQELSPETGVCVIAADDMTTVSAQTAAAFY-DYPAQKL 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYLA 171
            + G +G +   +    I      SS  I PT+ + +       F Q    TTP  + L 
Sbjct: 116 RLIGVTGTNGKTTTTHLIEFLLAHSSSPI-PTALLGTLYARWPGFEQTASYTTPFAVQLQ 174

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + L      G     +E SSH L Q R+ G       FTNL +DH+DYHQ    YF+AK 
Sbjct: 175 QQLQLAVKAGAQMAVMEVSSHALAQGRIQGCPFEVAVFTNLTQDHLDYHQNMDDYFSAKA 234

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +LF     K   AII ADD+Y + ++++         S+         K +       + 
Sbjct: 235 KLFSSDYLKGR-AIINADDSYGERLIQQLPTEQVWSYSIQNPSADFWTKDLSYEPTGVRG 293

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +  F  PL G++ + N L A G  + +G+D  LV   L +   VPGR E V  
Sbjct: 294 IMHTPVGEVSFNSPLVGQYNLSNLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQI 353

Query: 352 NSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VDYAHT +SLE +L+  R    G++I VFGCGGDRD+ KRP MGKIA  LA
Sbjct: 354 QPEQDISVIVDYAHTPDSLENLLRASRPFIEGKMICVFGCGGDRDRTKRPKMGKIAAQLA 413

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGK 467
           D+A+VT DNPR+E+PE I  +++ GIP  +E     +R  AIRTAI      D +++AGK
Sbjct: 414 DVAVVTSDNPRTENPESILEDVLEGIPQSVEPMVICDRATAIRTAILQAKPGDGVLIAGK 473

Query: 468 GHETVHIVTNGEKKMSVD 485
           GHE   I+  G +K+  D
Sbjct: 474 GHEDYQIL--GTEKIHFD 489


>gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
 gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
          Length = 508

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 159/486 (32%), Positives = 240/486 (49%), Gaps = 31/486 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  + +DSR I+ G  F+A  G+  DG+ FIPQAIA GA A++    Y  ++F      
Sbjct: 22  EIKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVL----YDPRNFVWKSEW 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P L VD+ +    L AS +Y  HP     ++ +TGT+GK+S + +  Q     G  + 
Sbjct: 78  RIPALAVDDLKMKAGLIASYVY-DHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTA 136

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G   S      Q    TTP    L ++      +G  +V +E SSHGL Q R  G   
Sbjct: 137 VLGTLGSGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGRTMGTAF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL RDH+DYHQ   AY  AK  LF    P    A++  DD    E+ ++     
Sbjct: 197 SVALLTNLSRDHLDYHQDMDAYAAAKSSLF--FWPGLKYAVVNMDDVLGVELSRQLVTKP 254

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNA 315
            +++  G++       K   + +   +   + G +FD  F          L G+F   N 
Sbjct: 255 IKMMGYGFRYPENRDSKQFKMVHGSNLKFDIHGMEFDIEFEDSHEHLRIGLLGKFNASNL 314

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILK 374
           L      +A GI     +  L+ +  +PGR E + G N     I VDYAHT ++LE +L 
Sbjct: 315 LAVVAALLASGIRLPDAVGSLQSVQSIPGRMEKYYGINQ--STIIVDYAHTPDALEKVLC 372

Query: 375 NIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +R +      + R+  V GCGGDRD+GKR ++G++A  LAD  I T DNPRSEDP +I 
Sbjct: 373 TLRELLRIEGRNARLFCVVGCGGDRDRGKRAMVGEVATRLADEVIFTSDNPRSEDPLRII 432

Query: 430 AEIIHG-IPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            +I  G + G  + + +R  AI  AI      D++++AGKGHE    +  G+K    D +
Sbjct: 433 EDIAAGAVEGNYQVEVDRALAIYQAIANARSNDIVLIAGKGHEKFQEI-KGQKISFSDAE 491

Query: 488 IIREIL 493
           +++++L
Sbjct: 492 VVQQVL 497


>gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Laribacter hongkongensis HLHK9]
 gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9]
          Length = 491

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 230/458 (50%), Gaps = 34/458 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + V+SDSR +  G +F+A  G   DG  +I  AI++GA A+    A     F      
Sbjct: 22  RPDRVTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPA---DGFEWQPGW 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L V + R    + AS L G+  E   ++ VTGT+GK+S+ +++ Q     G  +  
Sbjct: 79  TVPNLPVPDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAAL 138

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG           D   TTP P+ + + L+    QG   V++E SSHGLDQ R++G+   
Sbjct: 139 IGTVGNGFFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFG 198

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH +  AY   K RLF     +   A+I  DD + +E+  R   AG 
Sbjct: 199 TAVFTNLTRDHLDYHGSMAAYGATKERLFHWQGLQH--AVINVDDQFGRELASRC-TAG- 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVYNAL 316
           +V++ G +   +   +  A+H       S+EG   +   P           G F   N L
Sbjct: 255 QVITYGLEHGDV---RPMAVH------ASLEGLAMELATPWGHGRIESAFLGRFNASNLL 305

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               +    G+        L ++    GR + VG  +R   + +DYAHT ++LE  L  +
Sbjct: 306 ACLAVLCVNGVPLTQACRVLGQIQPARGRMQRVG-GTREPLVVIDYAHTPDALEKALSTL 364

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             I    GR+  VFGCGGDRD+GKRP+MG IA   AD+ +VT DNPR+E P+ I  +I+ 
Sbjct: 365 ADIKPAGGRLFAVFGCGGDRDRGKRPLMGDIAERFADVTVVTSDNPRTESPQVIIDDILA 424

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           G+  P  +E  +R  AI  A+      DV++VAGKGHE
Sbjct: 425 GMRQPTQVEP-DRRAAIHWAVAQARVGDVVLVAGKGHE 461


>gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas sp. SN2]
          Length = 530

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 246/505 (48%), Gaps = 57/505 (11%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F +   + +I  ++ DSR +     FVA+ G++ DG  FIPQAI+ GA  I+  +  
Sbjct: 14  LAKFGIDAPDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQTDD 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQ 135
           S       +R ++ I+ +      LS  A+  Y      ++  AVTGT+GK+S    + Q
Sbjct: 74  SQAHGQMEMRDHSVIISLYQLPSMLSALAAAFYDYPALKMMTVAVTGTNGKTSTVQLLTQ 133

Query: 136 ICQRSGLSSFQIGP----------TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +    G  S  +G           T  +++ A +   TTP+ I L   L+      V H 
Sbjct: 134 LKDALGTRSASVGTLGSSVYEGENTQWVTTAAAN---TTPNAIRLQYVLAEFVQCEVRHT 190

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-------LL 238
           + EASSH L Q RL  +K     FTNL RDH+DYH T + Y  AK  L ++       L 
Sbjct: 191 AFEASSHALVQGRLSQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQPGLEAVVLN 250

Query: 239 PKESPAIIYAD--------DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +S +  +AD        D  S+E+      +  RV  V + G F     V A H + Q
Sbjct: 251 VNDSESQNWADYLDANAAKDGSSEEIAI----SKPRVTRV-WTG-FEPTDDVLATHKQPQ 304

Query: 291 --------VTISVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                   V+    G  FD +           L G F V N L A    +A G     V+
Sbjct: 305 DRHCFATNVSYHSSGIRFDLVSSWGTAPIELALFGSFNVSNTLSAISCLLAQGERFENVV 364

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             +  L  VPGR E          + VDYAHT ++LE +LK+ +T T+G++  VFGCGGD
Sbjct: 365 RVVNGLQPVPGRMEVFPVGGSAS-VIVDYAHTPDALEQVLKSAKTHTAGKVWCVFGCGGD 423

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIR 450
           RD+GKRP+MG  A   AD+ ++T DN RSE PE I ++I  G+      +E+ +R  AIR
Sbjct: 424 RDKGKRPLMGAAAEQHADVIVITTDNSRSESPESIASDIKAGLQRPNDAVEEADRESAIR 483

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIV 475
             ++  ++ D+++VAGKGHE   I+
Sbjct: 484 YCLDSADENDIIIVAGKGHEDYQII 508


>gi|322640591|gb|EFY37242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647732|gb|EFY44217.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648081|gb|EFY44548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656887|gb|EFY53173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657403|gb|EFY53675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663722|gb|EFY59922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666555|gb|EFY62733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672286|gb|EFY68398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322679505|gb|EFY75550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686166|gb|EFY82150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195010|gb|EFZ80196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200081|gb|EFZ85168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201098|gb|EFZ86167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209495|gb|EFZ94428.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212253|gb|EFZ97077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
          Length = 495

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 241/470 (51%), Gaps = 37/470 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311
              ++V  +G   H+   C  H +     +VE    G    F            L G F 
Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE 
Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +
Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427

Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I   + G ++ G       R EA+   I      DV+++AGKGHE   IV
Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKGHEDYQIV 474


>gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
 gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
          Length = 499

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 246/494 (49%), Gaps = 43/494 (8%)

Query: 13  ELINQLSIFPMQWRER----KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +LI+ L   P++  E     +I +V++DSR ++ G +F  + G   DGH F   A   GA
Sbjct: 3   QLIDLLKATPIERMEGNSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNFANMAAENGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGK 126
            AI+             + S+  I+ V +TRK +         Y      ++A+TGT+GK
Sbjct: 63  AAIIAEKKID-------VASDVTIIYVADTRKAMEDIVPYFFDYPSKKMRMIALTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           ++    +  I    G   ++ G   T+ +   D  +    TTP  I L + L  +  + V
Sbjct: 116 TTTTHVISHILHHVG---YKTGVIGTVHALIGDKEIPTHNTTPDVIDLQRILYQMLKENV 172

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE- 241
           THV +E SSH L   R+ G +     FTNL  DH+DYH+T   Y  AK  LF+ +  K+ 
Sbjct: 173 THVCMEVSSHSLVMGRVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKMVSDKDQ 232

Query: 242 ----SPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIH---NKQQVT 292
                 A I +DD Y+  VM  A +    C+V + G+ G      K   +H         
Sbjct: 233 IKDGKSAWINSDDPYAA-VMSNAISDPDFCQVSTYGFNGN--PDLKASDVHFSGKSSSFK 289

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I +  K +     L G F VYN + A G  ++ G+D   +   L     V GRFE +   
Sbjct: 290 IQLGEKRYVIKTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELI-EE 348

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT + LE IL   + I  GR+I  FGCGGDRD+ KRPIMG+IA + +D+
Sbjct: 349 GQSFSVVVDYAHTPDGLEKILTTAKEIAKGRLITCFGCGGDRDKLKRPIMGRIAANYSDV 408

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGN--------RIEAIRTAIEMLNKQDVLV 463
            ++T DNPR+EDPE+I  EI  G+    + K N        R  AI+ A+ + + QD+++
Sbjct: 409 VVITSDNPRTEDPEEIIREIAAGVQDISQHKSNLLYKTVTDRRAAIQYALSIAHNQDIVL 468

Query: 464 VAGKGHETVHIVTN 477
           +AGKGHE   I+ +
Sbjct: 469 IAGKGHEDYQILKD 482


>gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
 gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
          Length = 491

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 244/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR +  G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +    +  Q V    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH L   R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDPVTEEYMR---STAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSESVNIT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  +  L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVD----GGQDYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A + A  AI+T DNP
Sbjct: 350 DYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAILTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP+ I  +++ G  G  +    +R EAI   +     +D++++AGKGHET  I+
Sbjct: 410 RSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFYGVSEAKAEDIIIIAGKGHETYQII 466


>gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
 gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
          Length = 491

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 244/477 (51%), Gaps = 31/477 (6%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR +  G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V NT + L++ A   YG+  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + +I +  G  +  IG  +  I     + + TTP  + L +    +  Q V    +E 
Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244
           SSH L   R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E  A
Sbjct: 177 SSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ +DD  ++E M+   +    V++ G      I  K +         T+    +  +  
Sbjct: 237 VLNSDDPVTEEYMR---STAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSESVNIT 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             L G+F VYN L A    +  G+    ++  +  L  VPGRFE V     GG+ Y   V
Sbjct: 294 MKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVD----GGQDYTVIV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A + A  AI+T DNP
Sbjct: 350 DYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAILTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP+ I  +++ G  G  +    +R EAI   +     +D++++AGKGHET  I+
Sbjct: 410 RSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFHGVSEAKAEDIIIIAGKGHETYQII 466


>gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
 gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
          Length = 499

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 160/490 (32%), Positives = 242/490 (49%), Gaps = 52/490 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +  DSR    G IFVA+ G   DG  +IP+A+A G   IV            ++  
Sbjct: 33  QVTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTE-----HPRPESLSD 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               L V +T K +++ AS  Y + PE    I+ VTGT+GK++ A+   Q+    G+ + 
Sbjct: 88  EVAWLTVTDTAKAIAVLASVYYDR-PERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAA 146

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                ST+     D       TTP  + L + +  +   G  ++ +E SSH L Q R+ G
Sbjct: 147 LF---STVCIRIGDEEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYG 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH T QAY  AK  LF+ L P ++ A++ ADD           
Sbjct: 204 LPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDNLSP-DAYALVNADD----------- 251

Query: 262 NAGCRVLSVGYQGKFIHLKKVC----AIHNKQQVTISVEGKDF-----DFLFPLPGEFQV 312
               R  SV  Q    HL        A +  Q +   V+G        +    L G +  
Sbjct: 252 ----RNGSVMVQNCAAHLHTYAMRSHADYMSQLLGQYVDGSTLLLDNEEVEIKLVGSYNA 307

Query: 313 YNALVAAGLC--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           YN     G+   +   +D +L+L  +  L  V GRF+ + +  RG  + VDYAHT ++LE
Sbjct: 308 YNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLAS-PRGYHVVVDYAHTPDALE 366

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK +  + + ++ VV G GGDRD GKRP MG+IA ++ +   +T DNPRSEDP+ I  
Sbjct: 367 NLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCNCLYLTSDNPRSEDPQTIID 426

Query: 431 EIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           +++ GIP  +E+       +R +AI  A     + D++V+AGKGHET   +  G K    
Sbjct: 427 QMLEGIPQ-VERDQVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETYQEI-KGIKHHFD 484

Query: 485 DCDIIREILG 494
           D ++ +EI  
Sbjct: 485 DKEVAQEIFA 494


>gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
 gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
          Length = 495

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 237/465 (50%), Gaps = 39/465 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR +Q G +F+ + G   DGH +  QAIA GA A+VV     +           P 
Sbjct: 26  IGADSRRVQQGDLFLCLPGFTVDGHDYAEQAIASGAAALVVERELDVP---------VPQ 76

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LVV + R  +++ A  ++      +  + +TGT+GK+++   +++I + +G+++  IG T
Sbjct: 77  LVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTITYLIEKIMKDAGVNTGLIG-T 135

Query: 151 STISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +    Q   +  TTP  + L + L  ++ QGV    +E SSH L+Q R+ G       
Sbjct: 136 IQMRYGGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGRVKGTDFRTAI 195

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMKRAH 261
           FTNL +DH+DYH T + Y  AK  LF  L             A++ ADD  S  +  +  
Sbjct: 196 FTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASDSKYAVLNADDPASSYLQAQT- 254

Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
               +V++ G + +  +    +          +S    D D    + G+F VYNAL A  
Sbjct: 255 --AAQVITYGVEKESDVQASSITIGSKGTSFHVSTFKGDTDIELRMVGKFNVYNALAAIT 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +  GI    +   LE +  V GR E V        + VDYAHT + LE +L+ ++   
Sbjct: 313 AALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFA-VIVDYAHTPDGLENVLRTVKEFA 371

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            G++  VFGCGGDRD+ KRP+MGKIA   +D + +T DNPR+EDP+ I  +I  G+   I
Sbjct: 372 VGKVWCVFGCGGDRDRTKRPLMGKIAARYSDHSFITSDNPRTEDPKVILKDIEQGL---I 428

Query: 441 EKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           ++G          +R  AI  A+EM +  DV+++AGKGHET  ++
Sbjct: 429 DEGVPAERYELIVDRRTAIHKAVEMASPDDVVLIAGKGHETYQLI 473


>gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 501

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 165/503 (32%), Positives = 245/503 (48%), Gaps = 34/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+ +  P ++ ++   P    + +I  + ++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLHDLL-RAIPNVV-EMPNHPA--LDAQITGICTNSHACQPGNLFIGMPGTRVDGGDFW 56

Query: 61  PQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
             AIA GA A ++S  A           +  P ++           A+  +  +P   L 
Sbjct: 57  QSAIASGAVAALISPQAAQKHPPQPKPDAEPPCIICATDMTVACAQAAAAFYNYPTRQLQ 116

Query: 120 VTGTSGKSS------VASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPS 166
           + G +G +       +  F+    QR         PT+   +       F+Q    TTP 
Sbjct: 117 LVGVTGTNGKTTTTHLIEFILTQAQR---------PTALFGTLYARWQGFSQTAVHTTPF 167

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
           P+ L + L    + G     +E SSH L Q R+ G +     FTNL +DH+D+H+  + Y
Sbjct: 168 PVELQQQLHSAVAAGCELGVMEVSSHALAQGRVLGCEFDVAVFTNLTQDHLDFHRDMEDY 227

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           F AK  LF         AII ADD Y K ++++         SV      ++   +    
Sbjct: 228 FAAKALLFNSDY-LHGKAIINADDPYGKRLIEKVGRDRTWSYSVQNPSADLYTSNLTYTL 286

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              + T+     D  F  PL G++ + N L A G  + +G+D   V+  L +   VPGR 
Sbjct: 287 IGVKGTLHTPVGDVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFPGVPGRM 346

Query: 347 EFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E V     +   + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKI
Sbjct: 347 ERVQLKPDQDISVIVDYAHTPDSLENLLKAARPFIQGRMICVFGCGGDRDRTKRPKMGKI 406

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVL 462
             +LAD+A+VT DNPR+EDPE+I  +I+ GIP  +E     +R  AIRTAI      D +
Sbjct: 407 GAELADVAVVTSDNPRTEDPERIIQDILEGIPATVEPIVMSDRATAIRTAILDAKPGDGV 466

Query: 463 VVAGKGHETVHIVTNGEKKMSVD 485
           ++AGKGHE   I+  G +K+  D
Sbjct: 467 LIAGKGHEDYQIL--GTEKIHFD 487


>gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M0579]
 gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240149]
 gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 492

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFQTPWGEGKCHTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 VALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|288549342|ref|ZP_05966779.2| hypothetical protein ENTCAN_05119 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318746|gb|EFC57684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 471

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 237/462 (51%), Gaps = 33/462 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   +G +FVA+VG++ DG  +IPQAIAQG  A++  +     D         P++ +
Sbjct: 4   DSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAVIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P + L + G +G +   +  Q + Q + L    +G T  +  
Sbjct: 64  SQLNERLSALAGRFY-HEPSDQLRLVGVTGTNGKTTTTQLMAQWAQL----LGETGAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L+ QG +  ++E SSHGL QHR+  +K  A 
Sbjct: 119 TVGNGLLGNVSPTENTTGSAVDVQHVLAGLAEQGASFAAMEVSSHGLVQHRVAALKFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+      E  AI+ ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHHGE--AIVNADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGL 321
           +    +    G++  LK V   ++ +  TI V     + +    L G F V N L+A   
Sbjct: 237 MEDHINPNCHGRW--LKAVEVKYHDRGATIRVASSWGEGEIESRLMGAFNVSNLLLALAT 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A+G   A +L+  E+L  V GR E      +   + VDYAHT ++LE  L+  R   +
Sbjct: 295 LLALGYPMAELLKTAERLQPVCGRMEVFSAPGKP-TVVVDYAHTPDALEKALEAARLHCA 353

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           G++  VFGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+P  I  +I   + G ++
Sbjct: 354 GKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDI---LAGMLD 410

Query: 442 KG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G       R EA+  AI    + DV+++AGKGHE   IV N
Sbjct: 411 AGRARVVEGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGN 452


>gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
 gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
          Length = 506

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 250/476 (52%), Gaps = 26/476 (5%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S +  +WRE  +  ++ DSR I+   +FVA+ G+  DG  FIP AI  GA A V++ A S
Sbjct: 21  SDWQEKWREHSVANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATA-VLAEADS 79

Query: 79  LQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
           + +    +  +  +++      ++LS  A+R Y + P+    +LAVTGT+GK++++  + 
Sbjct: 80  IANHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQ-PDTRLKLLAVTGTNGKTTISQLLA 138

Query: 135 QICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           Q     G ++  +G T    ++S       TT + I +   L  L  QG    ++E SSH
Sbjct: 139 QWANLIGYNAGVMGTTGNGLLNSLIPAVN-TTGNAIEIPHVLHDLVEQGADFAAMEISSH 197

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  ++ +A  FTNL RDH+DYH     Y +AK  LF E   +    +I ADD  
Sbjct: 198 GLVQGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTE--HQAGIPVINADDDI 255

Query: 253 SKEVMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFP 305
               +    NA   V     L  GYQG+ + L  V   ++ Q V IS +       F  P
Sbjct: 256 GLSWLADLPNAVAVVTDKARLGEGYQGQALWLTDVA--YSTQGVNISFDSSWGAGQFTAP 313

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F V N L+A    +A+G     ++    +L  V GR E V   S    + VDYAHT
Sbjct: 314 LVGSFNVSNLLLALATLLALGHSIDKLIAAAPRLTAVIGRME-VFQRSDKPMVVVDYAHT 372

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +I+  LAD  I+TDDNPR+E P
Sbjct: 373 PDALEKALQALRVHCQGKLWCIFGCGGDRDIGKRPMMAEISERLADQIIITDDNPRTEAP 432

Query: 426 EKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             I ++++ G+    ++     +R  A   AIE     D++++AGKGHE   ++ +
Sbjct: 433 AGIVSDMLQGLT-LPQQAQVIHDRKLACTYAIEHARANDIILLAGKGHEDYQVLAD 487


>gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 503

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 242/480 (50%), Gaps = 38/480 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  + +DSR I+ G +FV + G   DGH +  QAI  GA AIV     S       +  N
Sbjct: 23  ITNLETDSREIRPGGVFVCVPGFHVDGHDYAEQAIRNGAVAIVAERELS------GLPGN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V +TR+ L + A+  +G     +  + +TGT+GK++    V QI   +   +  I
Sbjct: 77  VTHITVPDTRRILPILANAFFGDPTRQLKLIGITGTNGKTTTTHMVDQILNDARRKTGII 136

Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I +  +    TTP  I L +    + S G  +  +E SSHGLD  R+ G     
Sbjct: 137 GTLYMKIGNHVEKTLNTTPDTIQLMRYFHTIISHGGEYGVLEVSSHGLDMGRVRGCDFQT 196

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVMKRAHN 262
             FTNL  DH+D+HQT ++Y N K  LF +L       +  A++ ADDA S    KR   
Sbjct: 197 VVFTNLSHDHLDFHQTMESYRNTKELLFAQLGNSNRDMQKKAVLNADDAASSYYAKRT-- 254

Query: 263 AGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              ++++ G Q +         H ++ C  H +     S      D    + G   +YNA
Sbjct: 255 -SAQIITYGIQNQADVRATQIHHSREGCVFHAETPWGSS------DVNLKVHGAHNIYNA 307

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A   C+  GI    +   LE+   V GRF+ + T  R G + VDYAH  + L+  L++
Sbjct: 308 LAAMTTCLLEGIPLEEIRGSLEQFAGVHGRFQEIQTGRRFG-VVVDYAHNPDGLKATLQS 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            + ITSG++I V GC G+RD+ KRPIM  IA   +D  + T DNP SEDPE+I AE++ G
Sbjct: 367 AKAITSGKMICVMGCRGERDRSKRPIMADIAASYSDYVLFTADNPFSEDPEQIMAEMLGG 426

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +    E GN      R EAI+ A+EM   +D +++ G+GHET ++  +  +  S D DI+
Sbjct: 427 LTSR-ESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGRGHETRYVAGSRIESFS-DEDIV 484


>gi|225872739|ref|YP_002754196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793951|gb|ACO34041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 502

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 162/494 (32%), Positives = 259/494 (52%), Gaps = 49/494 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V  DSR +  G +FVA+ G   DG+ +I  AI +GA AI+  SA ++  +S  +R+
Sbjct: 21  ELTGVEYDSRRVTPGALFVAMRGETVDGNRYIGAAIEKGAGAILTDSAEAMATWS--LRT 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
           +  I  V + R+ ++L A+  +G HPE  LAV+G +G +   +    ++ + Q +   + 
Sbjct: 79  DVAIAQVPHGRQAMALVAANFFG-HPERQLAVSGVTGTNGKTTTTFLLESLLQHAQRKTA 137

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV----THVSVEASSHGLDQHRLDG 201
            +G   TI        L +P     ++ L  L  QGV    T   +E SSH L Q R+ G
Sbjct: 138 LVG---TIEYHLAGQVLPSPHTTPESRDLLALFRQGVDAGVTEAVMEVSSHALAQGRVYG 194

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMK 258
           I      FTNL RDH+D+H + Q YF AK  LF+  L   P+ S  ++  +D +  E+  
Sbjct: 195 IPYDVAIFTNLTRDHLDFHGSMQQYFAAKRMLFDASLGQPPRVS--VLNLEDPHGAELAL 252

Query: 259 RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPG 308
            A   G  + S G+  G+F            + V +S  G  F +  P         L G
Sbjct: 253 TAREHGSEIYSYGFNTGEF----------RAEDVQLSGGGMRFHWHTPFGHAPVTTRLIG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              VYN L A+   +A G+    V+E +  LH VPGRF+ +    +   + VDYAHT ++
Sbjct: 303 RVNVYNLLAASAGALARGLAFDQVVESVAHLHSVPGRFQTI-DEGQPFTVVVDYAHTDDA 361

Query: 369 LEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           L  ++   R +     GR+I +FGCGGDRD+ KRP+MG+ A + +D+ ++T DNPRSEDP
Sbjct: 362 LRNLIALARDLVHKHKGRVITLFGCGGDRDRTKRPLMGQAAAEGSDVVVLTSDNPRSEDP 421

Query: 426 EKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE-- 479
           E I A+++ G+      ++ + +R   IR A+E+    D++++AGKGHE    + +G   
Sbjct: 422 EAILADVLPGLTVPRTWYMLEPDRARGIRMALEIAQPGDIVLLAGKGHEKTQTLRHGTIP 481

Query: 480 -KKMSVDCDIIREI 492
              ++V   ++RE+
Sbjct: 482 FDDVAVAAAVLREM 495


>gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 515

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 165/496 (33%), Positives = 244/496 (49%), Gaps = 39/496 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F +   + +I  ++ DSR +     F+AI G++ DG  FIPQAI+ GA  I+  +  
Sbjct: 14  LAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTDD 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
           S       +R ++ I+ +    + LS  A+  Y    + +  +AVTGT+GK+S    + Q
Sbjct: 74  SEAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQ 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSV 187
           +    G  S  IG   + S F  D           TTP  I +   L+      V H + 
Sbjct: 134 LKDALGTRSASIGTLGS-SVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRHAAF 192

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSH L Q RL  +K     FTNL RDH+DYH T + Y  AK  L  +  P     ++ 
Sbjct: 193 EASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLCQ--PGLKAVVLN 250

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--------VTISVEGKD 299
           A+D  S +    A NA  R+ +   +     L +    HN  Q         +    G  
Sbjct: 251 ANDDESNKWDNVADNAITRIWTGIDESADGALFRA---HNNPQSRHCFATNASYHSGGCS 307

Query: 300 FDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           F+ +          PL G+F + N L A G  +A G     V++ +  +  VPGR E   
Sbjct: 308 FELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDAVVKAVNAITPVPGRMEVFP 367

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VDYAHT ++LE +L + +  T+G++  VFGCGGDRD GKRP+MG+ A   A
Sbjct: 368 VPG-AANLVVDYAHTPDALEKVLLSAKFHTAGKVWCVFGCGGDRDTGKRPLMGQAAEAGA 426

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D  ++T DN RSEDPE I  +II G+      +   +R +AIR  +   +K D+++VAGK
Sbjct: 427 DAIVITTDNSRSEDPESIAQDIITGLKDSSLAVSIPDREQAIRHCLAHADKSDIIIVAGK 486

Query: 468 GHETVHIVTNGEKKMS 483
           GHE   I+  G+KK +
Sbjct: 487 GHEDYQII--GDKKTN 500


>gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
          Length = 476

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 249/475 (52%), Gaps = 46/475 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E    ++S +S+ I+ G IFVA++GN  DGH +IP AI  GA+ I+        D+    
Sbjct: 20  EDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYIPSAIENGAKMIIAER----DDYPYP- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
             +  +++V N R  L   +S  Y   P+N   I+AVTGT+GK++    ++ I + S   
Sbjct: 75  -KDITVVLVKNLRDNLGYISSNFYN-FPQNKLKIIAVTGTNGKTTTTYILESIFKNSA-- 130

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +IG T   I     + + TTP  + L K +     + V +  +E SSH L Q R+  +
Sbjct: 131 --RIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDKNVEYFLMEVSSHALCQGRVKML 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  +  FTNL +DH+D+H+T + YF AK  +   L P  +  II  DD Y          
Sbjct: 189 EFDSAIFTNLTQDHLDFHETLEKYFEAKASIINHLKPN-ARLIINKDDKYCN-------- 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNK--------QQVTISVEGKDFDFLFPLPGEFQVYN 314
              R+L+V        LK+V  I+ +         +V IS + K + F   L GE+ + N
Sbjct: 240 ---RLLNVS---DSFSLKEVATINGEVLEYTLKGMKVRISKDDKKYIFTTKLMGEYNLQN 293

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A      +GID   ++  ++ ++ + GRFE +  N +   + VDYAHT++ LE ILK
Sbjct: 294 LLGAILSAYNLGIDLDEIINSIQNINSIAGRFEIID-NDKDVMVVVDYAHTADGLENILK 352

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +  +   R++ +FG GGDRD+ KR  M + A   +D+  +T DNPR+EDPE I  ++  
Sbjct: 353 TLSIMKKNRLVTLFGAGGDRDKTKRAKMAQAACKYSDLIFLTSDNPRTEDPEMILNDVEK 412

Query: 435 G----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           G    IP F +  +R  AI+ +I+ L K D+L++AGKGHE   I+  G +K+  D
Sbjct: 413 GMNSSIPYF-KICDREMAIKNSIQTLQKNDILLIAGKGHEDYQII--GREKIHFD 464


>gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
 gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
          Length = 496

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 235/466 (50%), Gaps = 13/466 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  + ++S     G +F+ + G + DG  F   AIA GA A +VS A +LQ    T 
Sbjct: 20  DAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFWQSAIASGALAAIVSPA-ALQKNPPT- 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144
                +L   +  +  +  A+  YG   + +  V  T       +   ++ +  ++ LS+
Sbjct: 78  -GEAVVLSAADMTQACAQLAAAFYGYPGQKLKLVGVTGTNGKTTTTHLIEFLLTKANLST 136

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T    F Q    TTP  + L + L+   + G    ++E SSH L Q R+ G +
Sbjct: 137 ALMGTLYTRWPGFEQTAVHTTPFAVDLQQQLAEAVNAGCEFGAMEVSSHALAQGRVLGCE 196

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                F+NL +DH+DYH   + YF AK  LF     K   AII ADD Y + ++    + 
Sbjct: 197 FEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPEYLKGR-AIINADDDYGQRLIASLSSE 255

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                SV      + +  +    N     +     +  F  PL G++ + N L A G  +
Sbjct: 256 RVWSYSVNNHSADLWMSDLSYEPNGVSGMLHTPKGNVAFRSPLVGQYNLENLLAAVGAVL 315

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSG 382
            +G+D  LV   + +   VPGR E V  N      + VDYAHT +SLE +LK  R    G
Sbjct: 316 HLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEISVIVDYAHTPDSLENLLKAARPFIPG 375

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           ++I VFGCGGDRD+ KRP MGKIA +LAD+A++T DNPR+EDPE+I  +++ GIP  ++ 
Sbjct: 376 KMICVFGCGGDRDRTKRPKMGKIAAELADVAVLTSDNPRTEDPERILQDVLAGIPDTVKP 435

Query: 443 G---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
               +R  AIRTAI      D +++AGKGHE   I+  G +K+  D
Sbjct: 436 TVICDRAIAIRTAILQAQPGDGVLLAGKGHEDYQIL--GTEKIHFD 479


>gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M04-240196]
          Length = 492

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   + +    VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 VALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrospira platensis str. Paraca]
          Length = 498

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 169/498 (33%), Positives = 250/498 (50%), Gaps = 27/498 (5%)

Query: 1   MKLQDLIYKDF--PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL+DL+  +   PE    L +        +I  ++++S   + G +F+ + G + DG  
Sbjct: 1   MKLKDLLNPNLLPPEYHPALDM--------EITGLATNSHACKPGDLFLGMPGTRVDGGD 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENI 117
           F P AIA GA A +VS + +      T     P ++   +  K  +  A+  Y  HP   
Sbjct: 53  FWPSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFY-NHPAQT 111

Query: 118 LAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
           L + G +G +   +    ++ +       +  +G   T    F +    TTP  + L   
Sbjct: 112 LKLVGVTGTNGKTTTTHLIEFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQ 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+     G     +E SSH L Q R+ G       FTNL +DH+DYH T   YF AK  L
Sbjct: 172 LADAVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALL 231

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QV 291
           F +    +  AII ADD Y K++M R    G RV S         +     ++     Q 
Sbjct: 232 FSDDY-LQGKAIINADDDYGKKLMARL--GGDRVWSYSVSDPSTDIWADSLVYQPTGIQG 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +        F  PL G++ + N L A G  +A+G+D + +++ L     VPGR E V  
Sbjct: 289 VLHTPMGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVKI 348

Query: 352 NSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +      + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DL+
Sbjct: 349 SPEQNITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLS 408

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGK 467
           D+A+VT DNPR+EDP++I  +++ GIP  ++    G+R +AIRTAI      D +++AGK
Sbjct: 409 DLAVVTSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAINEAQPGDGVLIAGK 468

Query: 468 GHETVHIVTNGEKKMSVD 485
           GHE   I+  G +K+  D
Sbjct: 469 GHEDYQIL--GTEKVHFD 484


>gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
 gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
          Length = 507

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 155/480 (32%), Positives = 244/480 (50%), Gaps = 14/480 (2%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV--VSSAYSLQDFSATI 86
           +I  ++ +S+ ++  +IFVAI G K+DGH +I  AI   A  I+  +S+  S  +     
Sbjct: 27  EIKSIAYNSKLVKKNYIFVAIKGLKDDGHKYIESAIKNKASIIIYDISADKSFINSLKEK 86

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
             N   +   N R+ L+  +++LY +  + +  +A+TGT+GK++ +  ++   + +    
Sbjct: 87  YKNVCFVGSKNPRETLAYMSAKLYDEPTKKMHSIAITGTNGKTTTSYLLKAALESAKNKI 146

Query: 145 FQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG    +   ++    LTTP  + L         + V+H+ +EASS  L   R D I 
Sbjct: 147 ALIGTIKNMIGKSEIKTNLTTPESVDLENIFDKAYKKNVSHIVMEASSQALAMDRCDYIN 206

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRA 260
             A  FTNL  DH+DYH   + Y  AK++LF  L         AII     Y KE+    
Sbjct: 207 YDAAIFTNLTEDHLDYHIDMKNYLKAKLKLFSLLKQSSKKKKLAIINISTDYFKEIKNYI 266

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFL-FPLPGEFQVYNALVA 318
                ++++ G   K  +  K+  +++K  +     +GK    +   L GEF V N+L  
Sbjct: 267 KKLDLKMVTYGLNEKADYYAKIITLNSKYSEYEFYAKGKFISKVKLSLLGEFNVVNSLSV 326

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                   +D   V++ + K+ V  GRFE V        + VDY+HT +SLE IL   R 
Sbjct: 327 LAYAYEYKLDIEKVIKAIRKVQV-SGRFEIVSGEKCPFIVAVDYSHTPDSLENILVESRK 385

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
           +   R+IVVFGCGGDRD+ KRPIM  IA   ADI+I+T DN R+E  E+I ++I +G   
Sbjct: 386 LKPNRVIVVFGCGGDRDRKKRPIMASIAEKYADISILTTDNQRTESIEQIMSDIENGFTH 445

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             + +  +R EAI  AI+   + D++++AGKGHET  I  +       D ++ RE L  I
Sbjct: 446 SNYKKIIDRKEAIFEAIKEAKENDIVIIAGKGHETYQIFPDKTIHFD-DTEVAREALSNI 504


>gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH
           391-98]
          Length = 491

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 160/479 (33%), Positives = 249/479 (51%), Gaps = 35/479 (7%)

Query: 14  LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ L  FP+  +E  +I  + +DSR +  G +FV + G   D H F  QA AQGA AIV
Sbjct: 6   LVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAEQAAAQGAAAIV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130
                        I  + P+++V +T + L++ A   Y +  H  +++ +TGT+GK++ +
Sbjct: 66  AERP---------IDVDVPVVLVKDTFRSLAVLADYFYEQPTHKLHLIGITGTNGKTTTS 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             + +I +  G  +  IG  +      +FA  N  TTP  + L +A   +  + V    +
Sbjct: 117 HIIDEIMRAHGHKTGLIGTINMKIGDETFAVKN--TTPDALTLQQAFHRMVEENVNSAVM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKES 242
           E SSH LD+ R+ G       FTNL +DH+DYH+T + Y +AK  LF +L       +E 
Sbjct: 175 EVSSHALDRGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREK 234

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFD 301
            A++  DDA ++  ++   +    V++ G      +  K +         T+    +   
Sbjct: 235 YAVLNNDDAATEAYIR---STAATVVTYGIDTHSDVMAKDIVMTSGGTTFTLVTPHESKK 291

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-- 359
               L G+F VYNAL A    +  G+    +++ LE L  V GRFE V     GG+ Y  
Sbjct: 292 ITMKLIGKFNVYNALAATAAGLVSGVSLQTIIDVLEHLTGVAGRFEVVD----GGQDYTV 347

Query: 360 -VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A + A  AI+T D
Sbjct: 348 IVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAILTSD 407

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSEDP+ I  +++ G+ G  +    +R +AI  AI     +DV+++AGKGHET  I+
Sbjct: 408 NPRSEDPQAILDDMLTGVKGNNYEVIVDRKKAIFHAISEAQAEDVIIIAGKGHETYQII 466


>gi|87122632|ref|ZP_01078509.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
 gi|86162090|gb|EAQ63378.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
          Length = 499

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 157/479 (32%), Positives = 246/479 (51%), Gaps = 32/479 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR++    +F A+ G   +G  ++    AQG   +VV     L +       +  +
Sbjct: 33  LATDSRNLSKSTLFFALPGVSSNGWDYLASIAAQGCRVVVVPEVVKLDE-----TLDLAV 87

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-----FQI 147
           + V +T   ++ F ++    +P +I AVTGT+GKSS++ +  QI +   LSS     F +
Sbjct: 88  IRVPDTLMSMTAFITKFALPYPSSICAVTGTNGKSSISYYSAQIAKAINLSSAIVGTFGV 147

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G    +    Q    TTP  + +       +SQGV H++ EASSH LDQ R++G+ +   
Sbjct: 148 GLLDDLKPSEQ----TTPDLLSMHTLAITFASQGVEHMTFEASSHALDQGRIEGLPIETA 203

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            ++NL RDH+DYH +  AY  AK +LF    P+   A+I  DD YS ++M  A  A C V
Sbjct: 204 IYSNLSRDHLDYHGSMAAYAEAKAKLFR--FPQLKRAVICIDDEYS-DIMLDA--AACPV 258

Query: 268 LSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            S   Q +        +  + ++ +  + V GK +    PL GEF V NA+ A       
Sbjct: 259 YSYSLQHENADFFASNLNYLTDRVEFDLKVLGKSYSVSLPLLGEFNVANAIAALAAHWDQ 318

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
             D A ++  L  L   PGR + V   S    + +DYAHT +++E+ LK +R    GR+ 
Sbjct: 319 VEDKAQLISALSLLSGAPGRMQMVNLQS-APLVVIDYAHTPSAIEVALKALRLHNKGRLT 377

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE---IIHGIPGFIEK 442
            ++GCGGDRD+GKRP+M + AL  +DIA +T DNPR+E   +I  +   ++      +E+
Sbjct: 378 CIYGCGGDRDRGKRPLMTEAALAYSDIACLTSDNPRTESVAQILDDALIMLENKDALVEQ 437

Query: 443 G------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           G      +R  AI   I      DV+++AGKGHE    + +G K    D ++  E L L
Sbjct: 438 GSLHILPDRRAAIFDVIAKAQSDDVILIAGKGHENYQDI-DGVKHHFDDAEVALEALTL 495


>gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
 gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
          Length = 492

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 240/503 (47%), Gaps = 29/503 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
            AIA GA  +          F+     N P   + + +    + A+++YG   ++  +  
Sbjct: 55  AAIANGATFVFWDDD---GKFTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDSLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGTLEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GY---QGKFIHLKKVCAIHNKQQVTIS 294
                AII  DD Y  E+  R     C  L+V GY   +   I +    A  +  +    
Sbjct: 230 HGLQHAIINVDDEYGAELAGRLKK-DCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQ 288

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +      L G F   N      L  A G     VLE L K+    GR + +  NS 
Sbjct: 289 TPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMDCI-MNSG 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD 
Sbjct: 348 KPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADK 407

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +VT DNPR E+P+ I  +I+  +  P  +E  +R  AIR A+E     D++++AGKGHE
Sbjct: 408 VVVTSDNPRLENPQDIINDILPAVSNPERVEV-DRAVAIRYAVEQAAANDIILIAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V  G K    D +I  + L
Sbjct: 467 NYQDV-QGVKHHFSDFEIAEKAL 488


>gi|58698810|ref|ZP_00373688.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534668|gb|EAL58789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 410

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/400 (36%), Positives = 224/400 (56%), Gaps = 24/400 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-- 86
           +I  V+ + + I+ G++FV +    E   ++I Q ++ GA+AI+ S   + +  S  I  
Sbjct: 18  EIKGVTCNPKKIKEGYLFVCV---SERDRIYIDQILSCGAKAIIASDCIT-EALSLGIIP 73

Query: 87  -RSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            R     +   N ++  S   SR Y  K P+ + AVTGT+GK+SV  F +QI Q SG ++
Sbjct: 74  TRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQNSGYNA 133

Query: 145 FQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             IG   T  +  +    N LTTP    L   L  +S   V H+ +E+SSHG+DQ+R+ G
Sbjct: 134 ASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGIS---VEHLVLESSSHGIDQYRIHG 190

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +KL A +FTN  +DH+DYH++   Y   K RLF E+LP+   AI+ AD      ++K A 
Sbjct: 191 LKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGALLKIAE 250

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               +V++ G +G  I L +  +  N Q +T+ ++ + ++  FP+ G+FQ YN L A G+
Sbjct: 251 KRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGI 310

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G++   +   +EKL   PGR E V   +     +VDYAHT ++L+  L +++   +
Sbjct: 311 S---GLNYREIC--VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHIN 360

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            +II+VFGCGG+RDQ KR  MGKIA   AD  I+T  N +
Sbjct: 361 KKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITQANSK 400


>gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 491

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/484 (31%), Positives = 240/484 (49%), Gaps = 42/484 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +     ++++++ DSR +  G +F+ I G   DGH F  +A   GA A+
Sbjct: 5   ELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELGAVAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V      +           P++ V ++++ +++ A+  YG   +   ++ +TGT+GK++V
Sbjct: 65  VAEKPVDV---------TIPVIYVRDSKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + SG  +  IG     I     + + TTP  + L +    +  +GV+   +E
Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD   +E ++        V++ G         K  A      + I+  G  F+  
Sbjct: 236 AVLNADD---EESVRMQTATAAHVITFGI--------KENADFRATNIEITSHGSTFNLT 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     +  +E +  V GRFE V    +
Sbjct: 285 TPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNA-GQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDY+HT + L  +L+ I    + R+ VV GCGGDRD+GKRP M KIA+  A   +
Sbjct: 344 DFPVIVDYSHTPDGLLNVLQTIDEFANKRVFVVVGCGGDRDKGKRPQMAKIAVQYATNPV 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPRSE+P  I  ++I G+P    ++   NR +AI+ AI      DV+++AGKGHE 
Sbjct: 404 FTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGHED 463

Query: 472 VHIV 475
             I+
Sbjct: 464 YQII 467


>gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 495

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/448 (34%), Positives = 222/448 (49%), Gaps = 25/448 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI--- 92
           DSR +  G  FVAI G    G  F+ QA A GA A++         F     +  P+   
Sbjct: 28  DSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVL---------FEPPAPNGMPVPAD 78

Query: 93  -LVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            + V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G  +  +G 
Sbjct: 79  AIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQAMTLLGTPTGTLGT 138

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D +      
Sbjct: 139 LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVAV 198

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH     Y  AK +LF     K   A++  DDA+ + +      A  R +
Sbjct: 199 FTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDAFGRTLFASLDPA-LRAI 255

Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V  + +    +  + +   HN     ++++G+      PL G F V N L  AG   A+
Sbjct: 256 GVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALWAL 315

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R+I
Sbjct: 316 EIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDRLI 375

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEK 442
            VFGCGG+RD GKRP M  IA   AD+AIVTDDNPRSED + I A+I+ G       I +
Sbjct: 376 CVFGCGGERDTGKRPQMAVIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPDAAIVQ 435

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +R  AI  AI M +  D++++AGKGHE
Sbjct: 436 RDRAAAIHQAIGMASASDIVLIAGKGHE 463


>gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Arthrospira platensis NIES-39]
          Length = 498

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 171/501 (34%), Positives = 252/501 (50%), Gaps = 33/501 (6%)

Query: 1   MKLQDLIYKDF--PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL+DL+  +   PE    L +        +I  ++++S   + G +F+ + G + DG  
Sbjct: 1   MKLKDLLNPNLLPPEYHPALDM--------EITGLATNSHACKPGDLFLGMPGTRVDGGD 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENI 117
           F P AIA GA A +VS + +      T     P ++   +  K  +  A+  Y  HP   
Sbjct: 53  FWPSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFY-NHPAQT 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYL 170
           L + G +G +   +    I     L +    PT+ + +       F +    TTP  + L
Sbjct: 112 LKLVGVTGTNGKTTTTHLI---EFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVEL 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L+     G     +E SSH L Q R+ G       FTNL +DH+DYH T   YF AK
Sbjct: 169 QHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAK 228

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ- 289
             LF +    +  AII ADD Y K++M R    G RV S         +     ++    
Sbjct: 229 ALLFSDDY-LQGKAIINADDDYGKKLMARL--GGDRVWSYSVSDPSADIWADSLVYQPTG 285

Query: 290 -QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q  +        F  PL G++ + N L A G  +A+G+D + +++ L     VPGR E 
Sbjct: 286 IQGVLHTPMGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDCLPAFGGVPGRMER 345

Query: 349 VGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           V  +      + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA 
Sbjct: 346 VQISPEQNITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAA 405

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVV 464
           DL+D+A+VT DNPR+EDP++I  +++ GIP  ++    G+R +AIRTAI+     D +++
Sbjct: 406 DLSDLAVVTSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAIDEAQPGDGVLI 465

Query: 465 AGKGHETVHIVTNGEKKMSVD 485
           AGKGHE   I+  G +K+  D
Sbjct: 466 AGKGHEDYQIL--GTEKVHFD 484


>gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
 gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
          Length = 486

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 162/513 (31%), Positives = 259/513 (50%), Gaps = 56/513 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQD++Y    E I   +  P++        V  DSR+++  +++VA  G + DGH FI  
Sbjct: 4   LQDILYGVSIEAIVGATTIPVKG-------VVFDSRNVKIDFVYVAQKGVQVDGHDFISH 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI+ GA+ IV       +   A   +    + V+N+ K L + AS  Y        ++ V
Sbjct: 57  AISNGAKVIVC------EFIPAECVAGVAYVKVENSSKTLGVLASNFYDNPSRKLTLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++AS +  +    G +   +     I    Q +N  TTP  I + K L  +  
Sbjct: 111 TGTNGKTTIASLLYALFSSEGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHAMVE 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH  +E SSHG+ Q+R++G+    G F+NL  DH+DYH   + Y + K + F+  LP
Sbjct: 171 SGVTHCFMEVSSHGIAQNRIEGLHFYVGIFSNLTHDHLDYHGDFKNYRDIKKQFFDS-LP 229

Query: 240 KESPAIIYADDAYSKEVM------------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           K + A+   DD     ++            K+  +   ++L   + G  + ++       
Sbjct: 230 KTAFALTNVDDKNGTYMLQNTVAKKYTYAIKQHADFKAQILECQFSGMLLKIQ------- 282

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q+V  S           L G F   N L    +   + + S  +L+ + +L  V GRF+
Sbjct: 283 SQEVWTS-----------LIGAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGRFQ 331

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKI 405
            + T ++   + VDYAHT ++LE +L+ I TI +    +I V GCGG+RDQ KRP+M K 
Sbjct: 332 TLQTPNK-VTVVVDYAHTPDALENVLQTIATIRTRNETLITVIGCGGNRDQEKRPLMAKA 390

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-----RIEAIRTAIEMLNKQD 460
           A++ +D  I T DNPR+EDP  I ++++ G+P    K       R EAI  A ++  + D
Sbjct: 391 AVNFSDKVIFTSDNPRNEDPAVIISDMMKGVPAEHYKKTLKVTLREEAIAMAGQLAKEGD 450

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++++AGKGHET   + NGE+    D DI +EI 
Sbjct: 451 IVLIAGKGHETYQEI-NGERFPFSDMDIAKEIF 482


>gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
 gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
          Length = 488

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 231/457 (50%), Gaps = 33/457 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR       F+A+ G   DGHLFI +AI  GA  +V       +DF    +     + V
Sbjct: 30  DSRKAACNTAFIALKGVAIDGHLFIDKAINLGAIVVVC------EDFPKEQKEGVTYIQV 83

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            +T+  L++ AS  Y      I  + VTGT+GK++VAS + Q+ +++G   +++G  ST+
Sbjct: 84  SDTKIALAIMASNFYDNPSSKIPLIGVTGTNGKTTVASLLYQLFKKAG---YKVGLLSTV 140

Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +       TTP  + +   L  +   GV    +E SSHG+ Q R +G+    G F
Sbjct: 141 KVLVDETEFKATHTTPDSVTINSYLDKMIDAGVDFCFMEVSSHGIHQKRTEGLTFAGGVF 200

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL  DH+DYH T  AY N K   F+  LPK +  +   DD   + +++ +     + + 
Sbjct: 201 TNLSHDHLDYHDTFAAYRNVKKHFFDT-LPKSAFVLANIDDKNGRFMLQNS-----KAIK 254

Query: 270 VGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             Y  K     KV  +  +   T I+++G   +    L G F +YN          +G++
Sbjct: 255 KTYALKTAADYKVKILEKQLSGTLIALDGT--EVWIKLIGVFNIYNVTAVIATAELLGLE 312

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              +L  L  L  V GRFE+V  +  G    VDYAHT ++L+ +L+ I  I  G  ++I 
Sbjct: 313 KLEILTILSALESVSGRFEYV-ISQDGVTAIVDYAHTPDALKNVLETINDIKIGAEKVIT 371

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--- 443
           V GCGGDRD+ KRP M  IA  L++  I T DNPR+E+P+ I  ++  GI     K    
Sbjct: 372 VLGCGGDRDKTKRPKMAHIASQLSNQVIFTSDNPRTENPQTILEDMEAGIALQNYKKTLT 431

Query: 444 --NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             +R +AIRTA +     D+L++AGKGHE     TNG
Sbjct: 432 ILDRKQAIRTACKFSEPGDILLIAGKGHENYQ-ETNG 467


>gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola sp. JR]
 gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR]
          Length = 495

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 166/485 (34%), Positives = 248/485 (51%), Gaps = 37/485 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++ DSR +Q G+ F+ I G K DGHLF   A+  GA  I+     ++      +  
Sbjct: 23  QIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQNAVENGATVIIAEKPVTVPSSVTVVTV 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  ++TR+ L+   +  Y  +P    NI+ VTGT+GK++    ++ I  ++G    
Sbjct: 83  -------EDTREALAYMGAAFY-DYPGDKLNIIGVTGTNGKTTTTHLIENILVKAGK--- 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI +   D  L    TTP  + L   L+ +   GV +  +E SSH L+ +R+ G
Sbjct: 132 KVGLIGTIKNKIIDRVLPVTNTTPESLDLQALLAEMVDAGVDYAVMEVSSHALELNRVAG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
            +     FTN+ +DH+D+H+T   Y  AK +LF  L       +    II  DD+  +  
Sbjct: 192 CEYDQAIFTNITQDHLDFHETMDNYLAAKQKLFINLGKNSRKSRNKYGIINIDDSKGQSF 251

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++  H    +V++ G Q    +  +K+    +    T        D    L G F VYN+
Sbjct: 252 LEVTHG---QVITYGIQSAADVRAEKIDLRSDGVSFTAVTPRGSVDLKLNLTGLFNVYNS 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A    +   I   ++ E LE++  VPGR E V        + VDYAHT + LE +L  
Sbjct: 309 LAAVASGLGENIALPVIKEALEEVKGVPGRMEKVEAGQPFA-VLVDYAHTPDGLENVLSA 367

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R  T GR+I VFGCGGDRD+ KRPIMG+++  L+D  ++T DNPRSE P +I  +I  G
Sbjct: 368 AREFTKGRLITVFGCGGDRDRTKRPIMGEVSAKLSDFTVLTSDNPRSESPAEILRDIEEG 427

Query: 436 IPGFI--EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC-DI 488
           +   I  EK     +R EAIR A+ M    DV+V+AGKGHET  IV  G K +  D  ++
Sbjct: 428 VKPIIGPEKYTVIEDRKEAIRHALNMARAGDVVVIAGKGHETYQIV--GTKVLPFDDREV 485

Query: 489 IREIL 493
             EIL
Sbjct: 486 AMEIL 490


>gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA6140]
          Length = 492

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACQGEYTDGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|215482065|ref|YP_002324247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851363|ref|ZP_08433415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332868774|ref|ZP_08438397.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
 gi|213987659|gb|ACJ57958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730079|gb|EGJ61407.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332733203|gb|EGJ64400.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
          Length = 500

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 156/474 (32%), Positives = 237/474 (50%), Gaps = 52/474 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSLQ 80
           QW ++  +  S DSR ++ G IF+A+    +       F   A+A GA A++  +   + 
Sbjct: 16  QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFFAEAALANGALAVISETELGVA 75

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV--- 133
           +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  +   
Sbjct: 76  NE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAEL 125

Query: 134 ----QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EA
Sbjct: 126 ISSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEA 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  D
Sbjct: 180 SSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLD 237

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----- 304
           DA++  +++ A N   +   + Y      L +  A +    +  S+ G  F+ +      
Sbjct: 238 DAHADLMIESAQNNPAQPKILTYS-----LTQNTADYYITDLNYSLAGATFNLVSQQGSF 292

Query: 305 ----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G F V N + A       G D   ++  + KL   PGR + +  + R     V
Sbjct: 293 AVESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVV 350

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNP
Sbjct: 351 DYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNP 410

Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           R+EDPE+I A++  GI        E  +R EAI+   E     D++V+AGKGHE
Sbjct: 411 RTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 464


>gi|307824826|ref|ZP_07655049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
 gi|307734184|gb|EFO05038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
          Length = 538

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 248/500 (49%), Gaps = 53/500 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT----P 91
           DSR +  G +FVA+ G K+ G   + QA+  GA A++   A + +  +   R ++    P
Sbjct: 39  DSRELVCGDVFVALAGAKQHGLAHVEQAVNNGACAVIFDPAGNGRQLAEAFRCDSSTPVP 98

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++ V+N    L   A+R Y    +   ++ +TGT+GK+S + F+ Q+    G+    IG 
Sbjct: 99  MIAVENLGLKLGELAARFYCDPSQFMTVIGITGTNGKTSCSQFLSQMLDDCGI----IG- 153

Query: 150 TSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T     + + N+   TTP  + + K L+ L       V++E SSHGL+Q R++G+     
Sbjct: 154 TLGWGEWDKLNKTLNTTPDALAIQKILAELLKDKKRTVAMEVSSHGLEQGRVNGVTFKGA 213

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTN+ RDH+DYH T  AY  AK+ L ++  P  + A +  DD YS+ V+  A     ++
Sbjct: 214 VFTNISRDHLDYHGTMDAYVQAKLALLKQ--PGLAFAAVNLDDGYSERVIA-AVPESVQL 270

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVA 318
                +GK     +  +  N   +    +G +FD  F         PL G+F V N L  
Sbjct: 271 WQFSVKGKTADSGECVSAEN---ILHKTDGIEFDVRFRDELQRVQVPLFGDFNVENVLAV 327

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + +A+ +     ++ L  +  V GR E  G  +    I+VDYAHT ++L+ +L ++R 
Sbjct: 328 LTVMLAMEVSLQEAVKKLAGIKPVNGRMERFGAETDP-MIFVDYAHTPDALDKVLSSLRK 386

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                + VVFGCGG+RD GKRP MGKIA   AD  ++TDDNPR E+   I  +I+ G   
Sbjct: 387 HCKQALWVVFGCGGNRDTGKRPQMGKIAEQWADHVVITDDNPRYENGLDIVNDILAGCSS 446

Query: 439 FIEKG-------------------NRIEAIRTAIEMLNKQDVLVVAGKGHETVH-----I 474
             + G                   NR +AI+  +    K D +V+AGKGHE         
Sbjct: 447 TAKDGGSVATDMEPVRPAKVEVIQNREQAIQKVVASAAKNDCIVIAGKGHEQYQESNGVC 506

Query: 475 VTNGEKKMSVDCDIIREILG 494
           V   ++++ +D    R++LG
Sbjct: 507 VPFSDRQVVIDALDRRKVLG 526


>gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sp. M21]
 gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21]
          Length = 505

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 162/487 (33%), Positives = 238/487 (48%), Gaps = 46/487 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR +  G +F A+ G K DG  F+  A+  GA AIV     +    +     
Sbjct: 22  EIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGGAVAIVADRPCACPGVT----- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
              ++VV + R  +SL A+  YG     I  V  T       +   V+ I +++G+ S  
Sbjct: 77  ---VVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTTTYLVEGIMEQAGVPSAV 133

Query: 147 IGPTS---TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +G  S     +     N  TTP  + L + L  L   G     +E SSH L+Q R+DG  
Sbjct: 134 LGTISYRFAATEIPAPN--TTPESVDLQRILRELVDLGARGAVMEVSSHSLEQRRVDGCL 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP---AIIYADDAYSKEVMK 258
                FTNL RDH+DYH   ++YF +K+RLF +LL    E P   A++  DD +   +  
Sbjct: 192 FDVALFTNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPLRRAVVNLDDPFGPRI-- 249

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            A  A   VL+    GK  I + +     +  +  +     +   +  L G F +YN L 
Sbjct: 250 -AEKASAPVLTYSMTGKADISVAEAEFTVDGIRCRLDTPVGEISLVSELLGRFNLYNILS 308

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A G  +A+G     +   +E    VPGR E V  +  G  + VDYAHT ++LE +L  + 
Sbjct: 309 AVGAGLALGYSKEAIRAGIEGHKRVPGRLERV-ESEEGITVLVDYAHTGDALENVLSTVS 367

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
            + + RII +FGCGGDRD+GKRP+MG+IA   +D+A++T DNPR+E+P  I  ++  GI 
Sbjct: 368 ELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAVITSDNPRTEEPSAILDDVRAGIL 427

Query: 437 -------------PGFIEKG-NRIEAIRTAIEMLNKQ----DVLVVAGKGHETVHIVTNG 478
                         GF EKG   IE+ R AI          D++++AGKGHE   IV  G
Sbjct: 428 PLGLREYGLEELAAGFHEKGFATIESRRAAIRAALLAARPGDIVILAGKGHEDYQIV--G 485

Query: 479 EKKMSVD 485
            +K   D
Sbjct: 486 TEKFHFD 492


>gi|37527523|ref|NP_930867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|46576914|sp|Q7N142|MURE_PHOLL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|36786958|emb|CAE16032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 495

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 252/492 (51%), Gaps = 40/492 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVAI G++ DG  +IPQAIAQG  A++  +   + + +  I 
Sbjct: 20  RELREMTLDSRKSSAGDLFVAIKGHQTDGRHYIPQAIAQGVAAVIAEAQGEVDNGTVQIM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ V++    LS  A   Y  HP + L + G +G +   +  Q + Q S      +
Sbjct: 80  HGVPVVYVNDLNNKLSQLAGEFY-CHPGDKLHLIGVTGTNGKTTTTQLLAQWS----HGL 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L  L  Q  T  ++E SSHGL Q R+
Sbjct: 135 GETSAVMGTVGNGLLGRVAPSENTTGSAVDIQLDLQQLVRQEATFAAMEVSSHGLVQGRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH   + Y  AK  LF     K+   II ADD    + + R
Sbjct: 195 AALPFEAAVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHNVKQQ--IINADDEIGLKWLSR 252

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQ 311
              A        L   +QG+++  +++   H+K  V+I+ E    G   D    L G F 
Sbjct: 253 LPQAVAVTMENRLPENWQGRWLAAREI-KYHDKG-VSITFESSWGGGTIDS--SLMGAFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    +A+      +LE    L  V GR E   T  +   + VDYAHT ++LE 
Sbjct: 309 VSNLLLALSTLLALDYPLEKLLETASCLEPVCGRMEVFTTPGKP-VVVVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L   R    G++  VFGCGGDRD+GKRP+MG +A  LAD  IVTDDNPR+E+P+ I A+
Sbjct: 368 ALMAARLHCQGKLWCVFGCGGDRDKGKRPLMGGVAEQLADYVIVTDDNPRNEEPQAIIAD 427

Query: 432 IIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV- 484
           I   + GF++ G       R+EA+  AI      DV+++AGKGHE   +V  G +++   
Sbjct: 428 I---LTGFLDPGRAIAIHGRVEAVTNAIMQAKADDVVLIAGKGHEDYQLV--GHRRLDYS 482

Query: 485 DCDIIREILGLI 496
           D   +  +LG+I
Sbjct: 483 DRLTVARLLGVI 494


>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 780

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 155/510 (30%), Positives = 265/510 (51%), Gaps = 49/510 (9%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      E +I  +  DSR + AG +FV  VG + DGHL++ +A  +GA 
Sbjct: 247 ELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRRTDGHLYLSEADKRGAV 306

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGK 126
           A+V S    +++          +++V++T   L   ++  Y K+P   +AV   +GT+GK
Sbjct: 307 AVVASKEIDIEETLGC----KALVIVEDTNAVLPALSAAFY-KYPSKNMAVIGISGTNGK 361

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL----TTPSPIYLAKALSYLSSQG 181
           ++ A  ++ + +  GL +   G  ST++ +   DN+L    TTP  + +   ++ +   G
Sbjct: 362 TTTAYLIKGMYEAMGLRT---GMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNG 418

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL-P 239
              V +EASSHGL   R D +      FTNL  DH+D +H T++ Y +AK +LF  ++ P
Sbjct: 419 TEAVVMEASSHGLASGRCDEVDFDIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFARMVDP 478

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEG 297
           +    I+  DD+ +   + +  N    V++   + K   +H  K      + QV ++   
Sbjct: 479 ERHRKIVNIDDSNASFFIAQG-NPDVPVVTFAIENKSADVHPLKFELSLFETQVLVNTPH 537

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G 
Sbjct: 538 GILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGV 597

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VDYAHT + L ++L ++R +   RII V GC G+ D+GKRP+M K+A D +++ ++T 
Sbjct: 598 I-VDYAHTPDGLSILLDSVRELKPKRIITVIGCAGEGDRGKRPMMTKVATDKSEVTMLTS 656

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---------------KGNRI-------EAIRTAIEM 455
           DNP++EDP  I  +++ G+   ++                G+R+        A+R A+ M
Sbjct: 657 DNPKNEDPLDILDDMLAGVGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAM 716

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             + D++V+AGKGHET  I   G+KK   D
Sbjct: 717 GEEGDMVVIAGKGHETYQI--EGDKKEFFD 744


>gi|325923948|ref|ZP_08185538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545574|gb|EGD16838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 491

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 226/451 (50%), Gaps = 17/451 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +  DSR ++AG  FVAI G    G  F+ QA A GA A++       +  +     
Sbjct: 17  QVSGLVMDSRAVRAGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPAELPAPADAI 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L     R  L   A + +G+  +   ++ VTGT+GK+S    + Q     G+ +  
Sbjct: 77  AVPGL-----RARLGAMADQFHGQPSQALRMVGVTGTNGKTSTVQLLAQALTLLGMPTGT 131

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D +   
Sbjct: 132 LGTLGVGLYGSAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFD 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH     Y  AK +LF     K   A++  DD + + +   A +   
Sbjct: 192 VAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDDFGRTLFA-ALDPAL 248

Query: 266 RVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           R + V  + +   + +  A+   HN     +++ G+      PL G F V N L  AG  
Sbjct: 249 RAIGVSSRAQAQAIVRAQALQLDHNGINFALNIHGEVHPVHSPLLGRFNVDNLLAVAGAL 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+ I  A + E L +L  + GR   +G       + VDYAHT ++LE  L ++R+    
Sbjct: 309 YALDIAPAQIAEVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALASLRSHAQD 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GF 439
           R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G       
Sbjct: 369 RLICVFGCGGERDTGKRPQMAAIAEVNADVAIVTDDNPRGEDGDAIVADILRGFARPDAA 428

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I + +R  AI  AI M +  D++++AGKGHE
Sbjct: 429 IVQRDRAAAIHQAISMASASDIVLIAGKGHE 459


>gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
 gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
          Length = 474

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 237/481 (49%), Gaps = 40/481 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++SDSR   AG +F+A  G + DG  FI QAIA GA  ++    +  + F          
Sbjct: 14  MTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVI----WEQEGFDWNPAWTVDH 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             V   R   S  A + YG HP     ++ VTGT+GK+S + ++ Q        +  IG 
Sbjct: 70  QPVTGLRGQASAIAGQFYG-HPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVIGT 128

Query: 150 TSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                  A    + TTP PI L   L+     G    ++E SSHGLDQ R++GI      
Sbjct: 129 LGNGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGRVNGIDFKVAV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL RDH+DYH    +Y +AK +LF         AI+  DDA+ + ++      G  VL
Sbjct: 189 LTNLTRDHLDYHGDMASYADAKRKLFH--FGGVQAAILNQDDAFGRALLSELKAKGKHVL 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA------AGLC 322
           S G  G       VC       +    EG       P  GE  V+  LV           
Sbjct: 247 SYGLSGG-----DVCG----HDLHFDAEGLHMQVHTP-QGEAMVHAKLVGRFNASNLLAV 296

Query: 323 IAIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNI 376
           +A  + S + LE     L  +   PGR + +G    GG+  + VDYAH+ ++LE  L  +
Sbjct: 297 LATLLASEVALEDAVRVLADIRPAPGRMQQLGG---GGQPLVVVDYAHSPDALEKALNAL 353

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R      +I VFGCGGDRD+GKRP+M ++A  LAD  IVT DNPR+EDP++I AE++ G+
Sbjct: 354 REQAKANLICVFGCGGDRDKGKRPLMAEVASRLADKVIVTSDNPRNEDPKEIIAEVVAGL 413

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             P  +E  +R +AI  AI      DV+++AGKGHE    V+ G +    D ++  ++LG
Sbjct: 414 HGPAQVEP-DREQAITQAIRAAQAGDVVLIAGKGHEDYQEVS-GVRYPFNDAEVAAKVLG 471

Query: 495 L 495
           +
Sbjct: 472 V 472


>gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 503

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 254/486 (52%), Gaps = 46/486 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL---QDFSATIRSNTPI 92
           DSR+I  G +FVA+ G+K DG L+I  AI +GA A+++ S   +   + +S  + +  P+
Sbjct: 30  DSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDITISKKYSYHL-NKIPV 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + V+   ++LS  A   Y  HP    +++ VTGT+GK+++   + +  Q  G  S  +G 
Sbjct: 89  VHVNYLPRYLSDIAGSFY-NHPSRFLDLIGVTGTNGKTTITHLLARWVQLLGKKSAVMGT 147

Query: 150 --TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +++    N  TT S I   K LS      +T V++E SSHGL+Q+R+D +   A 
Sbjct: 148 LGNGMLNNMCLSNN-TTCSSIDAQKILSQFVKDKITFVAMEVSSHGLNQYRVDALYFKAA 206

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-- 265
            FTNL  DH+DYH     Y  +K RLF+EL  ++   II ADD      +     A    
Sbjct: 207 IFTNLSHDHLDYHGNVMQYSMSKWRLFDELCVEK--YIINADDPVGCRWLYYLPQAIAVT 264

Query: 266 --RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYN 314
             R L   ++GK+I     CA+    +V   + G D  F            L GEF V N
Sbjct: 265 ITRNLPFFWKGKWI-----CAL----KVNYHIHGTDITFDSSWGHGVIHSQLLGEFNVSN 315

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A G  + +G   +L++    +L  V GR E   ++     I VDYAHT ++LE +L 
Sbjct: 316 LLLALGTLLILGYPLSLLVHTSSQLQPVAGRMEVFRSHGYPTVI-VDYAHTPDALEKVLI 374

Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +IR     G++  VFGCGGDRD  KR +MG I    AD  I+T+DNPR+E+P+ I  +I 
Sbjct: 375 SIRQFYYWGQLWCVFGCGGDRDPSKRALMGCIVSRYADYIIITNDNPRTEEPQSIINDIT 434

Query: 434 HGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            GI         I+  NR  AI+TAI   + +DV++++GKGHE   I+ N     S D D
Sbjct: 435 RGITHRKKIIKIIQ--NRCCAIQTAILKASLEDVILISGKGHEKYQIIGNNRIYHS-DKD 491

Query: 488 IIREIL 493
           I+   L
Sbjct: 492 IVENFL 497


>gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
          Length = 480

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 234/454 (51%), Gaps = 19/454 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++ ++S D+R I+   IFVA  G   D H  I + I      ++V+     ++F    
Sbjct: 21  EYEVADISFDNRDIKENSIFVAYKGVSYDTHNDINKLINDSRIKVLVTE----KEF---- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             + P +VV N R+ LS+ +   + K+ E N + VTGT+GK++ A  +  I + +G  + 
Sbjct: 73  --DFPTIVVKNGRRALSIISKNFFIKNYEPNYIGVTGTNGKTTTAYLINHIVEFTGYKTA 130

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           + G  +  I      +  TTPS     K L          V +E SSH LDQ R+ GI  
Sbjct: 131 RFGTINYKIDKELYPSTTTTPSTYEFYKMLGVAEKANCEFVVMEVSSHALDQDRVYGINF 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               +TNL  DH+DYH+    YFN+K +LF E L      I+  DD Y K+++    +  
Sbjct: 191 NYAIYTNLSGDHLDYHKDLDDYFNSKSKLFTEYL--NGCGIVNIDDEYGKKLLYLIKDNE 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S         ++      +K  + +++ G+   F   L G+  +YN + A      
Sbjct: 249 ILTYSFNNNKANCFVEHFDMNLDKTDIVLNLLGEKIHFETSLVGKHNIYNLMAAILTAHH 308

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GID   +   ++    VPGR E +  N+    I++DYAHT ++LE +L ++R     RI
Sbjct: 309 LGIDHDRITRAIKTFSNVPGRLEKLIYNNI--YIFIDYAHTDDALENVLSSLRPFRKRRI 366

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441
           I +FGCGGDRD+ KRP M K+A   +D+ +VT DNPR+EDPEKI   I+ G       + 
Sbjct: 367 ITLFGCGGDRDKSKRPRMAKVAEKYSDLVMVTSDNPRNEDPEKIIDGILKGFGDKSKVVV 426

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + +R EAI+ A++    +D++++AGKGHE   ++
Sbjct: 427 EPDRREAIKLALKEAEPEDIVLIAGKGHEDYQLI 460


>gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
          Length = 492

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 230/465 (49%), Gaps = 32/465 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L    S      A++ ADD  S E 
Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 250

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +       +  +S    + +    L G F VYNA
Sbjct: 251 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 309 LAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           IR    G+II VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I  G
Sbjct: 368 IREFAKGKIITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKG 427

Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                    ++E     AI  AI M +  D++++AGKGHET  I+
Sbjct: 428 FSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 472


>gi|262280347|ref|ZP_06058131.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258125|gb|EEY76859.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 499

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/475 (33%), Positives = 241/475 (50%), Gaps = 53/475 (11%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +QW ++  +  S DSR +++G IF+A+      E   +F   A+A GA AI+  +   L+
Sbjct: 15  VQWSKQPFHGFSLDSRKVESGQIFIALTSYSQPEKTRIFAESALANGALAIISETELGLE 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV--- 133
           +            V  N R+ +  +  R   +     P  I+AVTGT+GK++++  +   
Sbjct: 75  NE----------WVCPNVRQRMGEWQQRYLQQIDPVAPARIVAVTGTNGKTTISRLIAEL 124

Query: 134 ----QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EA
Sbjct: 125 ISSQQQQCAVMGTTGNGILPDLTPSTH------TTLDALQLQNALHDYTKQGATFASLEA 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF         A+I  D
Sbjct: 179 SSHGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FSSLKVAVINLD 236

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----- 304
           D Y+  ++  A     +   + Y      L +  A +    ++ S+ G  F+ +      
Sbjct: 237 DEYAALMINAAKQNPAQPKILTYS-----LTQNTADYYISDLSYSLAGATFNLVSQQGSF 291

Query: 305 ----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G F V N + A       G D   ++  + +L   PGR + +     G R++V
Sbjct: 292 AVQSPLLGHFNVENLIAALIAAEQAGFDLEALVAFVPQLIGAPGRMQVI---RDGERLFV 348

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DN
Sbjct: 349 VDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470
           PR+EDPE+I A++  GI     + + I   R AI+ + +Q    D++V+AGKGHE
Sbjct: 409 PRTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHE 463


>gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
 gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
          Length = 515

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 231/465 (49%), Gaps = 43/465 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR +  G ++VA+ G +  G  F  QA A GA AI    A   +  +    + 
Sbjct: 33  VTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAAAAGAVAIWTDPAGRHRAAA----TG 88

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LV D+ R  L   AS +YG    ++  + VTGTSGK++    ++   + +G+ +  I
Sbjct: 89  LPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGKTTTVYLLEAGLRAAGVDTAVI 148

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T+     D RL    TTP    L    + +   GV   ++E SSH L Q R+ G  
Sbjct: 149 G---TVEMRIGDTRLPSSLTTPEATDLHAIFAKMREVGVGAAAMEVSSHALAQGRVGGTC 205

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+DYH T   YF AK +LF     +    ++  DD Y +E+       
Sbjct: 206 YDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPAYSRVG--VVNVDDGYGREL------- 256

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVY 313
             R+  V     F       A    + V +  +G  F  + P          LPG F V 
Sbjct: 257 -TRIAQVPLT-TFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEADVSIQLPGPFNVA 314

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A    +  G+   +    +  L  VPGR E +    +     VDY+H   ++E +L
Sbjct: 315 NALAAIVALVEAGLPLQVAAAGVGTLTGVPGRLEPI-DEGQDFTALVDYSHKPGAVEAVL 373

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++R +T+GR+IVV GCGGDRD+GKRP+MG+ A  LAD+A++TDDNPRSEDP  I A ++
Sbjct: 374 TSLREVTAGRLIVVLGCGGDRDRGKRPLMGETAARLADVAVLTDDNPRSEDPLAILAAMV 433

Query: 434 HGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            G+           + + +R  AI  A+    + DV+V+AGKGHE
Sbjct: 434 EGVLKVPQAERAHLVVEPDRAAAIALALGRARRGDVVVIAGKGHE 478


>gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
 gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
          Length = 487

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 238/447 (53%), Gaps = 17/447 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR +  G +F+A  G   DG  +I QA+A GA A++  S    QDF          
Sbjct: 14  VTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDS----QDFVWNAAIKVSN 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L V   +  ++  A+  Y ++P    +++ VTGT+GK+SV+ ++ Q  Q  G  +  IG 
Sbjct: 70  LGVRELKSQVAQIAAEFY-QYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKTAVIGT 128

Query: 150 TSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             +  + A  N L     TTP  I L K L+  ++QG   V +E SSHGLDQ R++ I+ 
Sbjct: 129 IGSGFADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGRVNAIEF 188

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL RDH+DYH T  AY +AK +LF+   P    AI+ ADD + K++ +      
Sbjct: 189 DFAVFTNLTRDHLDYHVTMDAYASAKQKLFD--WPSLRTAIVNADDDFGKKMAESLRVNN 246

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +L+ G     +   ++    +   + +S           + G F  YN L      +A
Sbjct: 247 KSLLTYGLLHGDVRADQLTLGPSGISMQVSTPQGAAVLNASVLGRFNAYNLLAVLATLLA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             +     +  + ++  V GR +  G N +   + VDYAHT ++LE +L ++R  T G++
Sbjct: 307 RQVPLNEAIAAIAQIKPVAGRMQQFGGNDKP-LVVVDYAHTPDALENVLVSLREQTQGKL 365

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443
           + VFGCGGDRD GKRP+MG IA   A   +VT DNPRSE+P +I   +++G+        
Sbjct: 366 VCVFGCGGDRDAGKRPLMGAIAEKYAHHVVVTSDNPRSENPAEIIEHVVNGMTVLPSVAP 425

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +R  AI+ AI+  NK DV+++AGKGHE
Sbjct: 426 DRAIAIQQAIKFANKDDVVLLAGKGHE 452


>gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 491

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/508 (31%), Positives = 256/508 (50%), Gaps = 36/508 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+Y    ++++     P+       +    D+  +  G ++VA+ G++  G   +
Sbjct: 1   MKLSELLYGHDHQVLHGDQDTPIT------SGPCLDADRVTPGSLYVALPGHRAGGPEAL 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            +A+A+GA A++V          A   +   ++ V + R   +L ++R +G+     +++
Sbjct: 55  GEALARGAAAVLVEGPDPAGHRPAD--TGACVVRVPDARIATALVSARYHGEPGRAMDVV 112

Query: 119 AVTGTSGKSSVASFVQQICQRS--------GLSSFQIG--PTSTISSFAQDNRLTTPSPI 168
           AVTGT+GK+SV+S  + +   S        G S  ++G  P     S      L+TP   
Sbjct: 113 AVTGTNGKTSVSSMYESLLTLSEGARVGVIGTSGARVGGAPIPMPRSV-----LSTPESP 167

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L+ +  +G   V +EA+S GL  HR+DG  +  G FTNL +DH+D H T ++Y  
Sbjct: 168 DLQYLLACMRDRGGDSVVLEATSMGLLNHRVDGSFVDVGVFTNLTQDHLDDHGTMESYTR 227

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AKM LF+ +  +   A++ ADD     +      A     +V     +     +    + 
Sbjct: 228 AKMLLFQGMCRR---AVVNADDPVGAAIPALMPGA-VTTYAVDADADY-RATDLVVDSSG 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +  +G+ +    P+PG F V NAL A   C  +G D   +++ L+++  +PGRFE 
Sbjct: 283 TRFVLHHDGRKYPAAIPVPGRFSVSNALAAVAACHVLGHDLDALVDALDRMPQIPGRFEH 342

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            GT   G  + VDYAH+ +SL+ +L  IR     R++ VFGCGGDRD  KR  MG+IA  
Sbjct: 343 FGT-PEGVSVIVDYAHSPDSLDKVLCTIRGFAPRRVLTVFGCGGDRDTTKRARMGEIAAT 401

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +D+ ++T DNPR EDPE I  ++  GI      F   G+R  AI  A+      DV++V
Sbjct: 402 YSDLCVLTSDNPRYEDPEAIMDQVAPGIEAVGTPFARVGDRRGAIALALSSAEPGDVVLV 461

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AGKG ET H    G+     D  ++R +
Sbjct: 462 AGKGSET-HQSVGGDLVPFDDMTVVRGL 488


>gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID18]
 gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
          Length = 492

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
 gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
          Length = 496

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 241/472 (51%), Gaps = 38/472 (8%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           + + I +++ DSR    G +F+ +VG   DGH +I +A + GAEA++V            
Sbjct: 22  KNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASLGAEAVLVEKDVPPVPGLVM 81

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           IR       V +T++ ++  A   Y  +P   + + G +G +   +    +      +  
Sbjct: 82  IR-------VKSTQETMTELAPWFY-DYPAQKMRMIGITGTNGKTTTTNILRTLLTNTGH 133

Query: 146 QIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI+    D    +  TTP  + L + L  ++  G  +V +E SSH L  +R+ G
Sbjct: 134 KVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGCDYVVMEVSSHALALNRVAG 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMK 258
           I+    + TN+ +DH+D+H+T + Y  AK  LF  L     K   AI   DDA S  +M 
Sbjct: 194 IEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRKKGKTAIFNMDDASSPLIMN 253

Query: 259 RAHNAGCRVLSVG-------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           R      +V++ G       Y  +F     V A H   ++++     + D    + GEF 
Sbjct: 254 RVKT---KVMTYGKARTNDVYPIRF----HVGAKH--MELSLHTPEGNMDLRLHITGEFN 304

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYN + A    +A G+    ++  L+    VPGRF+ +    +   + VDYAHT + L+ 
Sbjct: 305 VYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPGRFQLIDA-GQPFTVIVDYAHTPDGLDN 363

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+  R IT GR+  VFGCGGDRD  KRPIMGK+AL+LADI +VT DNPRSEDP+ I  +
Sbjct: 364 VLRTARQITKGRLWAVFGCGGDRDAKKRPIMGKLALELADILVVTSDNPRSEDPDTIIRD 423

Query: 432 IIHGI---PGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I  G    P   E     +R EAI+ AI     +DV+++AGKGHE   I+ +
Sbjct: 424 IETGFSDNPQHKEIYTISDRREAIQFAISHARPEDVIMIAGKGHENYQILKD 475


>gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
 gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
          Length = 522

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 165/481 (34%), Positives = 238/481 (49%), Gaps = 36/481 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR +  G  FVAI G   DGH FI  A+  GA  +V  +           R  
Sbjct: 62  IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCEA------LPTRARER 115

Query: 90  TPILV---VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG--- 141
            P +V   V +TR  L+  A+ L+G   +   ++ VTGT+GK++VA  V  + +  G   
Sbjct: 116 FPGVVFARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVAYLVHHLLEALGETA 175

Query: 142 --LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             LS+ ++      ++ A    LTTP P+ L + L  +  +G T  ++E SSH LDQ R+
Sbjct: 176 GLLSTIEVRAGGETTAPA----LTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRV 231

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G+      FT L  DH+DYH T   Y  AK  LF+ L P ++ A+   DD     ++  
Sbjct: 232 HGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGP-DATALYNTDDEAGPTMVA- 289

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             +   RV+S G  +   I    + A  + Q+V +    +D      L G F   N   A
Sbjct: 290 --DTEARVVSFGLDRDADIEATVLEARLDGQRVRLDGHERDTQ----LAGRFNASNMAAA 343

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G   A+G     V + L     VPGR E +     G  + +DYAHT ++LE +L+ +R 
Sbjct: 344 YGTGTALGHVPEAVADALADAPPVPGRVEPLRFED-GTTVIIDYAHTPDALENVLRTVRD 402

Query: 379 ITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            T  +  +  VFGCGGDRD GKRP MG+IA  LAD  IVT DNPR+E P  I  +I  G+
Sbjct: 403 TTPAKAALWCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDIRDGV 462

Query: 437 --PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             P  +    +R EAI+ A +     DV+V+AGKGHET   +    +    D ++ R   
Sbjct: 463 ERPESMRWIVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGTDTRPFD-DREVARRYF 521

Query: 494 G 494
           G
Sbjct: 522 G 522


>gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
          Length = 492

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 458

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 242/471 (51%), Gaps = 34/471 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTP 91
           + ++SR ++ G  F+AI     DGH +I +AIA GA  I+    +Y ++           
Sbjct: 5   LKTNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGATKIIAEHGSYKVE----------- 53

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            ++V++TR++L  +    Y    ++I  + +TGT+GK++      QI +   +    +  
Sbjct: 54  TIIVESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILK---MLKKNVAY 110

Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             TI  +  D +     TTP    L   L      GV +  +E SSH LD+ R+ G++  
Sbjct: 111 MGTIGFYYGDAKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFD 170

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +FTNL +DH+DYH+T + Y NAK  LF +    +  AII  DD + +  +  ++N   
Sbjct: 171 EVAFTNLTQDHLDYHKTLENYANAKRILFTKT-RNDKIAIINGDDEHYQHFVLESNNN-- 227

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             + +G     + + ++   H            ++     + G + +YN L+A  L   +
Sbjct: 228 --IIIGQHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKL 285

Query: 326 GIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           G+    +L   +KL    GR E +  GTNS    I+VDYAHT +++  +LK+     +GR
Sbjct: 286 GVKIEDILALNDKLKAPAGRMELLKYGTNS----IFVDYAHTPDAVINVLKSAEEFKNGR 341

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIE 441
           II + GCGGDRD  KRPIMGK AL+ +D  I T DNPRSEDP+ I  +I +G+ G  F  
Sbjct: 342 IITIIGCGGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEI 401

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + +R +AI   ++ L   D+L++ GKGHE   I   G+   S   ++++ I
Sbjct: 402 EVDRQKAIIKGMQQLKHNDILMILGKGHEDYQITKTGKHHFSDQEEVMKYI 452


>gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
          Length = 492

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
 gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
          Length = 492

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|17229155|ref|NP_485703.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc sp. PCC 7120]
 gi|21362694|sp|Q8YWF0|MURE_ANASP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17135483|dbj|BAB78029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Nostoc sp. PCC 7120]
          Length = 496

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 165/497 (33%), Positives = 246/497 (49%), Gaps = 28/497 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       ++ +   P    + ++  + ++S    AG +F+ + G + DG  F 
Sbjct: 1   MKLRELLAT-----VDSVENLPPVLADAEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-----ILVVDNTRKFLSLFASRLYGKHPE 115
           P AIA GA A +VS           +  N P     ++  +N  K  +  A+  YG   +
Sbjct: 56  PSAIASGAIAAIVSPQ--------AVEKNPPHDEAVVISSNNMTKACAAIAAAFYGYPGQ 107

Query: 116 NILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
            +  V  T       +   ++    ++ LS+  +G   T    F Q    TTP  + L +
Sbjct: 108 KLKLVGVTGTNGKTTTTHLIEFFLTKAKLSTALMGTLYTRWPGFEQTATHTTPFAVELQQ 167

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+   + G     +E SSH L Q R+ G     G F+NL +DH+DYH   + YF AK  
Sbjct: 168 QLAQAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKAL 227

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF     K   AII ADD Y + ++K          SV      + +  +    N    T
Sbjct: 228 LFSPEYLKGR-AIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGT 286

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I     +  F  PL G++ + N L A G  + +G++  L+   + +   VPGR E V  N
Sbjct: 287 IHTPEGNVSFRSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPEFPGVPGRMERVQIN 346

Query: 353 -SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKI  +LAD
Sbjct: 347 PDQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIVAELAD 406

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +A VT DNPR+EDP++I  +I+ GIP  ++    G+R  AIRTAI      D +++AGKG
Sbjct: 407 LAFVTSDNPRTEDPDRILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKG 466

Query: 469 HETVHIVTNGEKKMSVD 485
           HE   I+  G +K+  D
Sbjct: 467 HEDYQIL--GTEKIHFD 481


>gi|206577734|ref|YP_002240443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
 gi|206566792|gb|ACI08568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
          Length = 495

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 240/471 (50%), Gaps = 33/471 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +  +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D     
Sbjct: 19  ERILREMTLDSRVAASCDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAEDGEIRE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y   P   L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLSQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   LS L  QG T  ++E SSHGL QHR
Sbjct: 134 LGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  ++  A  FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + 
Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251

Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQV 312
           +  +A    +    +    G++  LK     ++    TI  +    + +    L G F V
Sbjct: 252 KLPDAVAVSMEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGNGEIESRLMGAFNV 309

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAHT ++LE  
Sbjct: 310 SNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKA 368

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I
Sbjct: 369 LQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI 428

Query: 433 IHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
              + G ++ G+      R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 429 ---LAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 476


>gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 487

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 240/473 (50%), Gaps = 19/473 (4%)

Query: 13  ELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           +L   L++ P  +   +  ++ +  DSR +  G +FVAI G + DG  +I        +A
Sbjct: 2   KLAELLTMLPTSFSVPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYI----DAAIDA 57

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKS 127
              +        +   R    ++     R+ LS  A   +G HP    N++ VTGT+GK+
Sbjct: 58  GAAAIIAEAPGMAVEQRRGVVVIGFSGVREHLSRIAGNFFG-HPSEKMNLVGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV   + Q+ +  G+ +  IG T S +       R TTP  + + + L+ L ++G   V+
Sbjct: 117 SVTHIMAQLAKALGMEAAVIGTTGSGLIGRLLPERHTTPDAVTVQQRLATLLAEGAELVA 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q R++ +   A + TN+ RDH+DYH T + Y  AK RLF +   +    ++
Sbjct: 177 MEVSSHALIQRRVEALHFAAAAITNISRDHLDYHGTMENYVAAKQRLFADFGVQNR--VV 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFP 305
            ADD       +         L+       +    V   H +  V +++ +G+      P
Sbjct: 235 NADDDTLSHWQQDDLADLWVSLNASPNEPCLQATGV-QFHEQGSVFSLNWQGESCVVETP 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F VYN L A  + + +    A + +   +L  VPGR E    N++   + VDYAHT
Sbjct: 294 LLGRFNVYNLLCAVAVLLKLNKPLADIGKACGRLQPVPGRMEAF-HNNQSPLVVVDYAHT 352

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L  +R    GR+  VFGCGGDRD+GKRP MGK+A D AD+ +VTDDNPR+E  
Sbjct: 353 PDALHQVLSALRLHCKGRLWCVFGCGGDRDRGKRPQMGKVAADYADVVVVTDDNPRTEPA 412

Query: 426 EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           E+I  +I+ GI    +      R EA+  A++   K DV+++AGKGHE   ++
Sbjct: 413 EQIIEDILTGIADKTQVKVWPGRREAVIRAMQEAGKDDVVLLAGKGHEDYQVI 465


>gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
 gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 163/514 (31%), Positives = 264/514 (51%), Gaps = 59/514 (11%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++ ++  E I+++++       +  I  +++ S  ++ G++F+   G++ D H    + I
Sbjct: 1   MLVRNLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEII 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVT 121
            +GA  +VV    S+ DF        P +VV ++R   S+  S LY   P N L    +T
Sbjct: 61  KKGASFLVVEHPISV-DF--------PHVVVSDSRLAESIL-SALYYDDPFNKLLTIGIT 110

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-------SSFAQDNRLTTPSPIYLAKAL 174
           GT+GK++ A     + +  G +   +G   TI         F  DN  TTP  I + KA+
Sbjct: 111 GTNGKTTAAHLFHHVLKTLGSNGSMLG---TIYYDILGEQKFHHDN--TTPDAIEILKAM 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +   H  +E SSH L   R++ +K    + TN+ RDH+D+HQT   Y   K+ +F
Sbjct: 166 KNTVDRSGKHFVMEVSSHSLAMKRVESVKFDIAALTNITRDHLDFHQTFDEYIKTKLHIF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKR--------AHNAGCRVLS--VGYQGKFIHLKKVCA 284
           + LL +   A++   D +   V KR        + N+  R+LS  +   G    LK    
Sbjct: 226 D-LLKEFGIAVV--SDEFEHIVNKRVKKVIYGMSENSDYRILSAEIDKFGTNFVLKSRFG 282

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-LVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            H   + +I++           PG    YNA LV A LC  +G D   ++E ++    V 
Sbjct: 283 EH---KCSINI-----------PGIHNAYNATLVIASLC-ELGYDIESIIEAIKSFEGVE 327

Query: 344 GRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           GRF+F+   +  G  I VD+AH+ ++LE  L   R I SGRII VFG GG  D+GKRP+M
Sbjct: 328 GRFQFIREGTLVGIDIVVDFAHSPDALEKTLITARKIASGRIITVFGAGGQADKGKRPMM 387

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
            ++    +D++I+T D+PR EDPE+I  E+  G+P    ++   +R EAI TA+ + N+ 
Sbjct: 388 AEVVCRYSDVSIITTDDPRGEDPEEILFEVEKGVPSGSPYLVIPDRKEAIETALTLANRG 447

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D+++VAG+GHE   I ++  K    D ++IR+IL
Sbjct: 448 DMVIVAGRGHEEYQIFSDERKIPFKDAEVIRKIL 481


>gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
 gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V Y   F     +  I      T S +G    F  P         L G F   N    
Sbjct: 258 LAV-YSYGFSEHADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M13399]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   + +    VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|224581966|ref|YP_002635764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224466493|gb|ACN44323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 471

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 233/454 (51%), Gaps = 21/454 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVVYL 63

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
               + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S  +G     
Sbjct: 64  SQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNG 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  FTNL
Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNL 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A   V   G+
Sbjct: 184 SRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA-VAVSMEGH 240

Query: 273 -----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                 G+++  + V        +  +    D +    L G F V N L+A    +A+G 
Sbjct: 241 INPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALGY 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++  V
Sbjct: 301 PLTNLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCV 359

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--- 444
           FGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   + G ++ G    
Sbjct: 360 FGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGMLDAGQVRV 416

Query: 445 ---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
              R EA+  AI      DV+++AGKGHE   IV
Sbjct: 417 MEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 450


>gi|326621819|gb|EGE28164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 471

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 233/454 (51%), Gaps = 21/454 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYL 63

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
               + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S  +G     
Sbjct: 64  SQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNG 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  FTNL
Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNL 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A   V   G+
Sbjct: 184 SRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA-VAVSMEGH 240

Query: 273 -----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                 G+++  + V        +  +    D +    L G F V N L+A    +A+G 
Sbjct: 241 INPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALGY 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++  V
Sbjct: 301 PLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCV 359

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--- 444
           FGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   + G ++ G    
Sbjct: 360 FGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGMLDAGQVRV 416

Query: 445 ---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
              R EA+  AI      DV+++AGKGHE   IV
Sbjct: 417 MEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 450


>gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 225/460 (48%), Gaps = 35/460 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +I  AIA GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACQGEYTDGRSYISAAIANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAATMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   AII  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AIINVDDEYGAELIGRLKK-DCSD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V Y   F     +  +H     T S +G +  F  P         L G F   N    
Sbjct: 258 LAV-YSYGFSGNADIRIVH----FTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAGC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPFDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQNIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           P     + +R  AIR A+E     D++++AGKGHE    V
Sbjct: 432 PTPECVEADRAAAIRYAVERATANDIILIAGKGHENYQDV 471


>gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 486

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 163/466 (34%), Positives = 246/466 (52%), Gaps = 41/466 (8%)

Query: 25  WRE-----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           W+E     R+  +V SDSR +  G IFVA+ G K  G+ FIP+A+ +GA A VV+S  + 
Sbjct: 4   WKEIINEARQGRQVRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGA-AFVVASEPAG 62

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQIC 137
           QD          +L  +N    L   A   +G  +    ++ VTGT+GK++ +  ++ I 
Sbjct: 63  QDR---------VLHHENPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIF 113

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              G   ++ G   T++       L    TTP  + L + L+ + + GV  V +EASSH 
Sbjct: 114 TSIG---YKTGVLGTVNYRWPGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHA 170

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAY 252
           LDQ RL GI +    FT L RDH+DYH   + YF AK +LF    P+    ++I  DD +
Sbjct: 171 LDQKRLAGIDIHVAVFTGLSRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPH 230

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +++   A     RV+  G Q  F      HL +  A  +   +  S +G+ +     LP
Sbjct: 231 GRDLAGEAP----RVMGYGLQKNFSPELQGHLVQSTA--SGLVMECSHQGRSWTISCSLP 284

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A G  I +G++     + L+ L  +PGR E V     G  IYVDYAHT +
Sbjct: 285 GIHNAQNLLAAQGAGICLGLEPEH-FDCLKDLGPIPGRLEKV-PAPEGINIYVDYAHTPD 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +   ++ ++  R+ V+FGCGGDRD+GKRP M +     AD   +T DNPR E+P +
Sbjct: 343 ALENVCLALKELSFSRLAVLFGCGGDRDRGKRPEMARAVAAHADAVFLTSDNPRFEEPGE 402

Query: 428 IRAEIIHGIPGF--IE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I  +I+ G+ G   +E + +R +AI+ A+ +L   + L+VAGKGHE
Sbjct: 403 IIKDILPGLAGHPCVEVEPDRRQAIQKAVSLLAPGEALLVAGKGHE 448


>gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
 gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
          Length = 909

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 156/478 (32%), Positives = 240/478 (50%), Gaps = 49/478 (10%)

Query: 23  MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + W ++ ++    +  DSR IQ G +FVA  G+K DG  F+  AI  GA AI++      
Sbjct: 5   LNWLKQHVDLDAHLRLDSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILI------ 58

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
           +D    +   TP+LVV N R+ L   A   YG     I  +A+TGT+GK+S A ++ +  
Sbjct: 59  EDNLDIVVLQTPVLVVKNLRQKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKAL 118

Query: 138 QRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               +    IG   TI    ++    LTTP  + + + L+ L ++G+  V++EASS G++
Sbjct: 119 NSINIPCATIGTLGTILPSGENLGGSLTTPDVLSVHRILATLVARGIEIVTIEASSIGIE 178

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
           Q RLD +++    FTNL  DH+DYH++ Q Y  AK  LF  L      AI   DD     
Sbjct: 179 QGRLDSVQIKIAGFTNLTLDHLDYHKSMQEYEEAKTSLF--LRDGLECAIFNLDDMAGVR 236

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305
             E  K + N G  +LS              A+    ++     G  F+   P       
Sbjct: 237 MYEKSKASRNLGYSILS-----------NSKAVITASELEFHDYGLSFNIQLPEGKSQVI 285

Query: 306 --LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR---GG 356
             L G   +YN L+ AG+   + +    ++E +  +  VPGR + V     ++SR     
Sbjct: 286 TRLAGRHNIYNLLLVAGVLSHLNVSVEKIVEIIATIRPVPGRLKLVDIQPFSSSRLINLP 345

Query: 357 RIYVDYAHTSNSLEMILKN---IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            +YVDY+HT ++L   +K    ++ I  G++  VFGCGGDRD+ KRP+M K+A + AD  
Sbjct: 346 HVYVDYSHTPDALANAIKALEVVKNIRGGKMACVFGCGGDRDKTKRPVMAKVASECADDI 405

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPR+E+   I  +I+ G   +     +R   I  AI   +K D +++AGKGHE
Sbjct: 406 YITSDNPRTENASDILNDILKGAKKYSFSHIDRAYTILHAILNASKNDTILIAGKGHE 463



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 47/371 (12%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++DSR +++  IF+AI G   DGH F+      GA   +VS      +  A +R    
Sbjct: 492 KINTDSRTLKSDEIFLAIKGENFDGHDFLETIDCIGA---IVSKP----NPKAKVRQ--- 541

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-SGLSSFQIGPT 150
             +VD+T   +   A     +    ++AV G++GK++    +  I +  +G  ++     
Sbjct: 542 -FIVDDTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMIASILKSYAGDGAY----- 595

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
                FA    L   + I + K+L  L+      V     +H  +   L G+ K      
Sbjct: 596 -----FATRGNLN--NHIGVPKSLLSLTDNHRIAVFELGMNHPGEIEYLSGLAKPTIAVV 648

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMKRAHN 262
           TN  R+H ++ ++ +A       +F+ L        P+ SP   Y  D  S+        
Sbjct: 649 TNAQREHQEFMKSVEAVARENGSVFQSLDADGVAIYPRSSP-YSYIWDEQSRH------- 700

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             C+ ++ G  G  ++   +         T+ VE +  +    + G+  + NAL A    
Sbjct: 701 --CKSITFGEAGS-VNATNISYDSEGSSFTVDVESEKLNIHLSILGDHNIQNALAAIATT 757

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTIT 380
           ++ GID   +   L +   V GR +      + G + +D  + +N   +I  +  ++T+ 
Sbjct: 758 LSAGIDKKYIESGLAEFKAVKGRLQ--KHILKDGTVILDDTYNANPDSVIAAIDILKTLA 815

Query: 381 SGRIIVVFGCG 391
           + R +V+   G
Sbjct: 816 TPRTLVLGDMG 826


>gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 223/460 (48%), Gaps = 35/460 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFCSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF         A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLF--YWHDLQHAVINVDDEYGAELVGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L V Y   F     +         T S +G +  F  P         L G F   N    
Sbjct: 258 LVV-YSYGFSEQADI----RITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAV 431

Query: 437 PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           P     + +R  AIR A+E     D++++AGKGHE    V
Sbjct: 432 PNPERVEADRAAAIRYAVERAAASDIILIAGKGHENYQDV 471


>gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 485

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 145/472 (30%), Positives = 244/472 (51%), Gaps = 56/472 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  I  ++ +S+ I  G +F AI G   DGH FI +AI + A  IV      +     T
Sbjct: 20  EEVNIENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEKKARVIVCQQLPEILPKEVT 79

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                 + V D+T     + A+  Y  HP     ++ VTGT+GK+++A+ +  + + +  
Sbjct: 80  F-----LKVADSTIAMAQIAAN--YFDHPSQKLKLVGVTGTNGKTTIATLLYHLFRNT-- 130

Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              ++G  STI+ +  + ++    TTP  I L + +  +  +GVTH  +E SSHG+  HR
Sbjct: 131 -KHKVGLISTIAIYINEQKIDTKNTTPDVITLNRRMHQMVEEGVTHCFMEVSSHGIAMHR 189

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++G+    G FTNL +DH+D+H+T   Y N K + F+  L K++ A+   DD     +++
Sbjct: 190 IEGLSFAGGIFTNLTQDHLDFHKTFAEYRNTKKKFFDT-LKKDAFALTNIDDKNGNFMLQ 248

Query: 259 --RAH--NAGCR--------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +AH  N   R        +L   + G  + +        +Q++              L
Sbjct: 249 NTQAHKYNYALRTYADFKANILENAFSGLVLRI-------GQQEIWTH-----------L 290

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F  YN L      + +G+D   V + + +L  V GRF++   ++    + VDYAHT 
Sbjct: 291 IGQFNAYNLLAIYATAVLLGMDKEEVAKQISELKPVSGRFQYF-ISAGNITVIVDYAHTP 349

Query: 367 NSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           ++L+ +L+ I++I   S  ++ + GCGG+RD+GKRPIM  IA  ++D  I T DNPR ED
Sbjct: 350 DALQNVLETIKSIKAPSQHLLTLVGCGGNRDKGKRPIMANIATTMSDKVIFTSDNPREED 409

Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P+ I  E+  G+       ++   +R +AI+ A  + +  D++++AGKGHET
Sbjct: 410 PQTILKEMEIGVNPDHQSKYMTITDRRQAIKVACNLAHAGDIILLAGKGHET 461


>gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
 gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
          Length = 499

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 154/473 (32%), Positives = 238/473 (50%), Gaps = 51/473 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           QW ++  +  + DSR ++AG IF+A+      E    F   A+  GA A++  +   + +
Sbjct: 16  QWPQQPFHGFNLDSRKVEAGQIFIALTSYSQPEKTRTFAEAALTNGALAVISETELGVAN 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133
                       V  + R+ +  +  R   +     P  I+AVTGT+GK++++  +    
Sbjct: 76  E----------WVCSDVRQRMGEWQKRYLQQTDTVKPLRIIAVTGTNGKTTISRLIAELI 125

Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              QQ C   G +   I P  T S+       TT   + L   L   +  G T  S+EAS
Sbjct: 126 SSQQQRCAVMGTTGNGILPDLTPSTH------TTLDALQLQNELHAYAKHGATFASLEAS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DD
Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFK--FNSLKVAVINLDD 237

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL------- 303
           A++  ++K A N   +   + Y      L +  A +    ++ S+ G  F+ +       
Sbjct: 238 AHADLMIKSAKNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVGQQGSFA 292

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G F V N + A       G D   ++  + KL   PGR + +  + R     VD
Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR
Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470
           +EDPE+I A++  GI     + + I   R AI+ + +Q    D++V+AGKGHE
Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVTQQAQAGDIVVIAGKGHE 463


>gi|226360235|ref|YP_002778013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238720|dbj|BAH49068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus opacus B4]
          Length = 524

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 236/454 (51%), Gaps = 26/454 (5%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           ++ I  G +F A+ G +  G  F   A+ +GA AI+   A  L   SA + ++ P+LV D
Sbjct: 47  AQGIVEGDLFAALPGARAHGAEFAADALDRGATAILTDEA-GLALVSA-LGTDAPVLVHD 104

Query: 97  NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153
           + R  L   ++ +YG+  E   ++ +TGTSGK++ +  V+     +G ++  +G   T +
Sbjct: 105 DPRGVLGELSATIYGRPSEKMQVIGITGTSGKTTTSYLVEGALNAAGRTTGLVGTIETRM 164

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           S     + LTTP    L    + +  QG+  V +E SSH L   R+DG++   G+FTNL 
Sbjct: 165 SGRRVPSALTTPEAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDVGAFTNLS 224

Query: 214 RDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSK---EVMKRAHNAGCRVLS 269
           +DH+D+H+  + YF AK RLF  E       A+I  DD + +   EV + AH+    V +
Sbjct: 225 QDHLDFHRDFEDYFAAKARLFAAESSVHAQHAVICVDDVWGRRMAEVARGAHSIVTTVAT 284

Query: 270 VGYQGKFIHLK---KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
               G  +       V A  +++    + EG   D    LPG++ V NA +A  LC  +G
Sbjct: 285 TPETGGAVWTAGPATVSASGSQKFALTTAEGTTLDVELRLPGQYNVANASLAVALCAVLG 344

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITSGRI 384
           +D    +  +  + V PGR + +    RG      VDYAH   ++E ++  +R    GR+
Sbjct: 345 VDPRDAVAGIAGVDV-PGRVQRI---DRGQDFLAVVDYAHKPAAVEAVIATLREQARGRV 400

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-- 442
            VV G GGDRD GKRP+MG  A   AD+ I+TDDNPR+EDP  IRA I  G  G  E   
Sbjct: 401 AVVVGAGGDRDAGKRPLMGAAAARGADLLIITDDNPRTEDPATIRAAIREGALGVPESER 460

Query: 443 ------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                  +R +AI  A+      DV++VAGKGHE
Sbjct: 461 GQVWEVADRAKAIADAVGWAQAGDVVLVAGKGHE 494


>gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
 gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
          Length = 492

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 160/473 (33%), Positives = 230/473 (48%), Gaps = 26/473 (5%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP AIA GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   ++  +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGVELAGRLKK-DCPD 257

Query: 268 LSV-GY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           L+V GY   +   I +    A  +  +        +      L G F   N      L  
Sbjct: 258 LTVYGYGFSEHADIRIVHFTASSDGMEAVFQTSWGEGRCRTRLLGRFNAQNLAACIALLC 317

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--S 381
           A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ I    
Sbjct: 318 ANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQG 376

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FI 440
             +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P    
Sbjct: 377 AALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPEC 436

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AIR A+E     D++++AGKGHE    V  G K    D +I  + L
Sbjct: 437 VEADRAAAIRYAVERAASSDIILIAGKGHENYQDV-QGVKHHFSDFEIAEKAL 488


>gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii ATCC 27126]
          Length = 521

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 163/502 (32%), Positives = 247/502 (49%), Gaps = 46/502 (9%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F +   + +I  ++ DSR +     F+AI G++ DG  FIPQAI+ GA  I+  +  
Sbjct: 14  LAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTED 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
           S       +R ++ I+ +    + LS  A+  Y    + +  +AVTGT+GK+S    + Q
Sbjct: 74  SSAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQ 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSV 187
           +    G  S  IG   + S F  D           TTP  I +   L+      V H + 
Sbjct: 134 LKDALGTRSASIGTLGS-SVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQSEVRHTAF 192

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSH L Q RL  +K     FTNL RDH+DYH T + Y  AK  L ++  P     ++ 
Sbjct: 193 EASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQ--PGLKAVVLN 250

Query: 248 ADDAYSKEVMKRAHNAGCRVLS------VGYQGKFIHLKKVCAIHNKQQ--------VTI 293
            +D  SK+    A  +  R+ +      +   G+   L++    HN  Q         + 
Sbjct: 251 VNDDESKKWDGAADKSITRIWTGIDESGLDGSGESECLRE----HNNPQSRHCFATNASY 306

Query: 294 SVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              G  F+ +          PL G+F + N L A G  +A G     V+  +  +  VPG
Sbjct: 307 HAGGCSFELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDDVVNAVNAITPVPG 366

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E          + VDYAHT ++LE +L + +  T+G++  VFGCGGDRD+GKRP+MG+
Sbjct: 367 RMEVFPVTG-AANLVVDYAHTPDALEKVLLSAKFHTTGKVWCVFGCGGDRDKGKRPLMGQ 425

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDV 461
            A   AD  ++T DN RSE PE I  +II G+      +   +R +AIR  +E  ++ D+
Sbjct: 426 AAEVGADAIVITTDNSRSESPESIAEDIIAGLKNRELAVSIPDREQAIRHCLEHAHESDI 485

Query: 462 LVVAGKGHETVHIVTNGEKKMS 483
           ++VAGKGHE   I+  G+KK +
Sbjct: 486 IIVAGKGHEDYQII--GDKKTN 505


>gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 534

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 165/488 (33%), Positives = 251/488 (51%), Gaps = 39/488 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR +  G +F A+ G   DGH F  QA A+GA AIV     +         +   +
Sbjct: 62  VTGDSREVVPGALFFALPGAVRDGHDFAAQAAARGAVAIVAERPVAC--------APAAL 113

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L+V ++R+ +++ A+  +G+  +   +  VTGT+GK++V +++ + C R+  +   +G  
Sbjct: 114 LLVPSSRRAMAVAAANFHGRPADALRVAGVTGTNGKTTV-TYLVEACARA--ADLPVGVL 170

Query: 151 STISS-FAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T++  F    R    TTP    L   L+ + + G   V +E SSH L Q R+ G++  A
Sbjct: 171 GTVTQRFPGVERPASHTTPESTTLHAVLAEMRAAGTRAVVLEVSSHALAQERVGGMRFAA 230

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH    AYF AK RLF E L  +  A++ A D Y   +  +    G R
Sbjct: 231 AGFTNLTRDHLDYHGDMDAYFAAKRRLFAEHLAPDGVAVVNARDPYGARLAAQL-GPGRR 289

Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V   G +    +  + V         T +          PL G   + N L AAGL +A+
Sbjct: 290 VWRYGTRADDTLRAEAVSTGLAGIAATFATPAGPIAIRSPLVGAHNLENLLCAAGLALAL 349

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    V   L      PGR E +  + RG  I+VDYAHT ++L   L+ +R +   R++
Sbjct: 350 GIAPDAVGRGLSASAGAPGRLERI--DGRGVSIFVDYAHTDDALGRALEALRALAPRRLL 407

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------- 437
            VFGCGGDRD+GKRP+MG++A   AD+ +VT DNPR+E PE I A+++ G+         
Sbjct: 408 CVFGCGGDRDRGKRPLMGEVAARGADLVVVTSDNPRTEAPEAIIADVLPGLERAGAARLS 467

Query: 438 ---------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
                    GF+ + +R  AI  A+ + +  D ++VAGKGHE   +V   +   S D + 
Sbjct: 468 ARAAADGARGFLVEADRRAAIALAVSLAHPGDAVLVAGKGHEDYQLVGTTKHPFS-DREE 526

Query: 489 IREILGLI 496
            R+ LG +
Sbjct: 527 ARKALGFV 534


>gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 492

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 VALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|291616267|ref|YP_003519009.1| MurE [Pantoea ananatis LMG 20103]
 gi|291151297|gb|ADD75881.1| MurE [Pantoea ananatis LMG 20103]
          Length = 499

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 158/465 (33%), Positives = 230/465 (49%), Gaps = 23/465 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + +++ DSR   AG +FVAI G++ DG  FIPQAIAQG  A++  +     D      
Sbjct: 24  RPLRDMTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREM 83

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y + P     + G +G +   +  Q + Q + L    +
Sbjct: 84  HGVPVIYLAQLHQRLSALAGRFY-QQPGEKQKLIGVTGTNGKTTTTQLLAQWASL----L 138

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  +        TT S + +   L  L  +G +  ++E SSHGL QHR+
Sbjct: 139 GETSAVMGTVGNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRV 198

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH   Q Y +AK  LF E   +   AII ADD   +  +  
Sbjct: 199 AALPFAAAVFTNLSRDHLDYHGDMQQYESAKWLLFSE--HQVGVAIINADDEVGRRWLAN 256

Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A        L  G  G+++    V    N   +       + +    L G F V N 
Sbjct: 257 LPDAVAVTMENNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNL 316

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+G     +L    +L  V GR E      +   + VDYAHT ++LE  L+ 
Sbjct: 317 LLALATLLALGYALDDLLRVAARLQPVNGRMEVFSATGKP-TVVVDYAHTPDALEKALEA 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  +FGCGGDRD+GKRP+MG IA   ADI +VTDDNPRSEDP+ I  +I+ G
Sbjct: 376 ARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADIVVVTDDNPRSEDPQAIVQDILSG 435

Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +  PG       R +A+ + I      D+++VAGKGHE   I+ N
Sbjct: 436 LLDPGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKGHEDYQIIGN 480


>gi|330501919|ref|YP_004378788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
 gi|328916205|gb|AEB57036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
          Length = 487

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 248/472 (52%), Gaps = 27/472 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL   P       I E++ DSR ++ G +F+A+ G ++DG + I  AIA+GA A
Sbjct: 1   MPMPLNQL--LPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAIARGAAA 58

Query: 71  IVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           +   +     + +A++ +++ +LV V      LS  A R YG+    +  + VTGT+GK+
Sbjct: 59  VAFEA-----EGAASMHADSAVLVPVKGLAGQLSAIAGRFYGEPSRALYLVGVTGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV+  + Q     G     +G          +  + TTP P+ +   L+ L   G   V+
Sbjct: 114 SVSQLLAQALDLLGQPCGIVGTLGNGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVA 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGLDQ R+  ++     FTNL RDH+DYH + +AY  AK +LF    P     +I
Sbjct: 174 MEVSSHGLDQGRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFA--WPNLRCRVI 231

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFP 305
             DDA+ +E+  + H +     S+     F++  +     H  +   ++  G+       
Sbjct: 232 NLDDAFGRELAAQTHESRLIGYSLNDADAFLYCSEAHFDDHGVRARLVTPRGEGV-LRSN 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           L G F + N L   G  +  G+D AL  +L+ L +L    GR + +G   +   + VDYA
Sbjct: 291 LLGRFNLSNLLAVVGALL--GLDYALDEILKVLPQLQGPAGRMQRLGGGDKP-LVVVDYA 347

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M  +A  LAD+  VTDDNPR+E
Sbjct: 348 HTPDALEKVLEAMRPHVEGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRTE 407

Query: 424 DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +P +I A+I  G        FI    R +AI   +      DVLV+AGKGHE
Sbjct: 408 EPAQIVADIRAGFAAPERVQFIH--GRGDAIARLVAQAEAADVLVLAGKGHE 457


>gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 810

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 155/474 (32%), Positives = 229/474 (48%), Gaps = 19/474 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR IQ   IF+A  G   DG L+I  AI  GA  +      + Q       SN PI
Sbjct: 26  LHADSRKIQPNDIFIACQGEYADGRLYIQSAIENGASFVFWEDDGTFQWQPEWAVSNQPI 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-ICQRSGLSSFQIGP 149
               + ++   + A+ +Y    +  NI  VTGT+GK+S+  ++ Q I       S  I  
Sbjct: 86  ---SDLKQCAGILANAVYQNSTDSLNIFGVTGTNGKTSITQWIAQAIDILENKKSCAIIG 142

Query: 150 TSTISSFA--QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T     F   Q+   TTP P+ +   L      G  H+++E SSHGL Q+R++G+     
Sbjct: 143 TVGNGFFGELQETTHTTPDPVSVQTLLRQFKQLGANHIAMEVSSHGLHQYRVNGVPFKTA 202

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAG 264
            FTNL RDH+DYH +   Y   K RLF         AII +DD +  ++   +K+ +   
Sbjct: 203 IFTNLTRDHLDYHNSMAEYGATKARLFH--WQGLENAIINSDDEFGSKLILQLKQQYADN 260

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             + S G+ +   I + +  A     ++ +     +      L G F   N   A G   
Sbjct: 261 LNIYSYGFNENADIRITEFIANTQGMKIGLQTPWGNGTTQTRLLGRFNAQNFAAAIGALC 320

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
           A G +    L  L ++    GR + +  N     + VDYAHT ++LE  L  +R I S  
Sbjct: 321 ASGFEFQAALNALSQIRPATGRMDCI-INENKPLVVVDYAHTPDALEKALTTLREIQSPE 379

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFI 440
            ++  VFGCGG+RD GKRP+MG +A   +D  IVT DNPR EDP+ I A+I+  +P   +
Sbjct: 380 SKLWCVFGCGGNRDSGKRPLMGAVAAQHSDRPIVTSDNPRMEDPQAIIADILPAVPNAAL 439

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            + +R  AI   I     QD++++AGKGHET   V  G K    D ++    LG
Sbjct: 440 VQVDRQTAIEQTIAQAAPQDIVLIAGKGHETYQDV-QGVKHHFSDFEVAENALG 492


>gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
          Length = 487

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 162/479 (33%), Positives = 247/479 (51%), Gaps = 40/479 (8%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+  L+I  +    E +++ ++ DSR  + G +FV + G   DGH +I  AI  G +
Sbjct: 3   LKELVKDLNIKEINGSLEVEVDSIAYDSRKTKQGSLFVCVEGTVVDGHKYINDAIENGTK 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGK 126
           A +V     + +   TI +       D+TR  L+  +   +G HP    N++ +TGT GK
Sbjct: 63  AFLVQKHVDVPEGITTIET-------DDTRFGLAAVSDAFFG-HPSSKLNLIGITGTKGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           ++    V+ I + +G     +G   T+++   +  L    TTP    L    + +    V
Sbjct: 115 TTTTYMVKAILEAAG---HNMGLIGTVANLIGNQVLYTSRTTPESYDLQSLFNDMIDNKV 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPK 240
               +E SS GL+ HR+       G FTN  RDHI    H T + YFNAK +LF+     
Sbjct: 172 DSAVMEVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMC--- 228

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKD 299
            + A+I  D  + +   K A  A  +VL+ G   +  I    V          ++     
Sbjct: 229 -NKAVINIDSEHGR---KMAELAEGKVLTYGLSSRSDIWASDVIKKTGHTFFKLNSPWGS 284

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGG 356
            D    L GEF +YNAL A G C  I     + LEH++K      VPGR E V T+    
Sbjct: 285 IDIETDLQGEFNIYNALAAIGSCCLI---PGITLEHVKKGLTKVTVPGRMESVKTDGNYS 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT +SLE +LK ++    GR++ +FGCGGDRD+GKRP MG+I+ ++AD  I+T
Sbjct: 342 -VLIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIIT 400

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR+E+PE+I  +I  GI      +I+  +R +AI+ A+E     D++++AGKGHET
Sbjct: 401 SDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAQDGDIIILAGKGHET 459


>gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. D2]
 gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
 gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
          Length = 482

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 255/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+       +D      +
Sbjct: 22  EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAIAILC------EDMPEEPVA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG     +  + VTGT+GK+++A+ +    +  G   ++
Sbjct: 76  GITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIATLLYNTFRYFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L   L  ++ +G  +V +E SSH + Q R+ G+
Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F++ LPK + ++   DD      ++ +  
Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNAFSLTNLDDKNGLVMTQNIRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R LS  ++G+ +  H + +    N  ++ +   GK           F   N L
Sbjct: 252 KVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ V  + +G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGITAIVDYAHTPDALINVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+     K      +R EAIRTA  +  K DV++VAGKGHE    +  G K    D +++
Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477

Query: 490 REIL 493
           +EI 
Sbjct: 478 KEIF 481


>gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis 8013]
          Length = 492

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 161/474 (33%), Positives = 230/474 (48%), Gaps = 28/474 (5%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SDSR I+ G IFVA  G   DG  +IP AIA GA  +          F+     N P   
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAIANGATFVFWDDD---GKFTWNPEWNVPNQG 84

Query: 95  VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G    
Sbjct: 85  IKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGN 144

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  FTN
Sbjct: 145 GFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTN 204

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  L+V 
Sbjct: 205 LTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPDLAVY 261

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLC 322
             G   H     A       T S +G    F  P         L G F   N      L 
Sbjct: 262 SYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALL 316

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
            A G     VL+ LEK+    GR + +  NS    + VDYAHT ++LE  L  ++ I   
Sbjct: 317 CANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQEIKPQ 375

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-F 439
              +  VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +P   
Sbjct: 376 GAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPE 435

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 436 CVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|271502047|ref|YP_003335073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
 gi|270345602|gb|ACZ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
          Length = 494

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 176/490 (35%), Positives = 252/490 (51%), Gaps = 33/490 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG+K DG  +IPQAIAQG  A+V  +  +  D + T 
Sbjct: 19  ERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVAQADDATPDGTLTE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + +  + LS  A R Y + P   L + G +G +   +  Q + Q S      
Sbjct: 79  MHGVPVIYLAHLNQRLSALAGRFY-RQPSTALQLIGVTGTNGKTTTTQLLAQWSQ----A 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + + + LS L  QG    ++E SSHGL QHR
Sbjct: 134 LGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVSSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +   A  FTNL RDH+DYH     Y  AK RLF E   +    +I ADD   +  + 
Sbjct: 194 VEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAE--HQVGQKVINADDEVGRRWLS 251

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFP-------LPGEF 310
           R  +A    +SV         + + A H +      +V+   FD  +        L GEF
Sbjct: 252 RLPDA--VAVSVAGSVDSSRARWLKATHIDYHDSGFTVQ---FDSSWGAGAINSRLMGEF 306

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L+A    +++G     ++E    L  V GR E    + R   + VDYAHT ++LE
Sbjct: 307 NVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLASGR-PTVVVDYAHTPDALE 365

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L   R    G +  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSEDP+ I  
Sbjct: 366 KALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDPQAIVT 425

Query: 431 EIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I+ G+   G ++    R EA+ +A+      DV++VAGKGHE   +V N E+    D  
Sbjct: 426 DILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGN-ERLDYSDRI 484

Query: 488 IIREILGLIL 497
            +  +LG+I+
Sbjct: 485 TVARLLGVIV 494


>gi|116329173|ref|YP_798893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330219|ref|YP_799937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282018|sp|Q04V91|MURE_LEPBJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122283045|sp|Q04Y85|MURE_LEPBL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116121917|gb|ABJ79960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123908|gb|ABJ75179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 500

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 170/524 (32%), Positives = 261/524 (49%), Gaps = 56/524 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL +L++ +FPEL  +L   P         I  + SDSR      IF            
Sbjct: 3   MKLTNLLH-EFPEL--KLGSLPSGKNPDSVPIEYIQSDSRKTNPEDIFC----------- 48

Query: 59  FIPQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVD---NTRKFLSLFASRLYGKH 113
            +P++I       + ++  S  L   S+ I  ++  +V++   +  +     AS L G H
Sbjct: 49  -VPESIGTKKGEFISNTKASVILLHRSSNISIDSSKIVLECEEDPEQLQGRIASFLLG-H 106

Query: 114 PEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIY 169
           P     I+AVTGT+GK+S+ + +  + +  G     IG         + D   TTP    
Sbjct: 107 PSKTLEIVAVTGTNGKTSLTNILFALAKDQGKICGLIGTIGVKFGDRSIDTGYTTPDASS 166

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L  +  +GVT V +EASSHGL   R+ GI L AG FTNL +DH+D+H   + YF +
Sbjct: 167 LNLILKQMKDEGVTTVFMEASSHGLKLGRIGGISLKAGVFTNLTQDHLDFHSDMEDYFES 226

Query: 230 KMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           K RLFE L   +SP A++        E+ ++  N              + +K +  I  +
Sbjct: 227 KFRLFEILDVSKSPFAVLDYSSPGGNELHRKIRN----------NLPDLPIKALDGIGGE 276

Query: 289 QQVT---ISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            +V+   ++++G  +    P          L G F V N  +A    + +G+D   +   
Sbjct: 277 YKVSNPFLTLQGTSYVLSLPGNRSQTISTNLLGSFNVRNTALAFLTGLGLGLDPKGMFSS 336

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L+++  +PGRF+ V +  R     VDYAHT ++LE I++++R     R+I +FGCGGDRD
Sbjct: 337 LKEIPQIPGRFQIVYSKDRSRMAVVDYAHTPDALENIIRSVRNSRPKRLITLFGCGGDRD 396

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF---IEKGNRIEAIRT 451
           + KRP M +IA +L+D  I+T DNPRSE PE I  EI  G  PGF   + + +R  AI  
Sbjct: 397 KTKRPKMARIAEELSDQVILTSDNPRSEKPEAILDEIQSGFSPGFTPLLREVDRARAISE 456

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            + +L +   L+VAGKGHE   I+   EK+   D + +R+  GL
Sbjct: 457 GVGILPEGGCLLVAGKGHEEYQIIGK-EKRHFSDVEEVRKAFGL 499


>gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
 gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
          Length = 489

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 170/500 (34%), Positives = 249/500 (49%), Gaps = 57/500 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINE----VSSDSRHIQAGWIFVAIVGNKEDG 56
           MKLQ L           LS  P  W  R  N     +  DSRH+  G +F  + G   DG
Sbjct: 1   MKLQTL-----------LSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDG 49

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HP 114
           H F  QA+ +GA AIV     S+      +          ++R+ +++ A   YG+  H 
Sbjct: 50  HDFAEQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHR 100

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
            +++ VTGT+GK++    ++Q+ +++G  +  IG   T I   +     TTP  + L + 
Sbjct: 101 LHLIGVTGTNGKTTTTHIIEQVARKAGKKTGLIGTVGTKIGDRSYPAVNTTPESLVLQRT 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              +  +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  L
Sbjct: 161 FKQMVDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLL 220

Query: 234 FEEL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           F +L     +  P  A++  DD  S+      H     +++ G + K      V A    
Sbjct: 221 FAQLGNRYDERRPKFAVLNHDDPVSQYY---KHMTAAPIITYGIKEK----SDVMA---- 269

Query: 289 QQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +Q+ ++  G  F    P         L G F VYN L A   C+A G   A + E L  +
Sbjct: 270 EQIEMTPGGMAFQLCTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANV 329

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VPGRFE V    +   + VDYAHT +S+E  LK +R      + VV GCGGDRD+ KR
Sbjct: 330 SPVPGRFETV-DEGQNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKR 388

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEM 455
           P+M + A+  AD+A+ T DNPRSEDP +I  ++  G+      ++   +R EAIR AI  
Sbjct: 389 PLMAQAAVRYADVAVFTSDNPRSEDPRQILRDMEAGVSAGEGTYVTIPDREEAIRYAIGQ 448

Query: 456 LNKQDVLVVAGKGHETVHIV 475
             + DV+++AGKGHET  I+
Sbjct: 449 AQEGDVVLIAGKGHETYQII 468


>gi|58583453|ref|YP_202469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625265|ref|YP_452637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75434163|sp|Q5GW37|MURE_XANOR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123521000|sp|Q2NZB4|MURE_XANOM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|58428047|gb|AAW77084.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369205|dbj|BAE70363.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 495

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 152/455 (33%), Positives = 223/455 (49%), Gaps = 25/455 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +  DSR +  G  FVAI G    G  F+ QA A GA A++         F      
Sbjct: 21  QVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVL---------FEPPAPD 71

Query: 89  NTPILV----VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGL 142
             P+ V    V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G 
Sbjct: 72  GLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D 
Sbjct: 132 PTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH     Y  AK +LF    P    A++  DD + + +   + 
Sbjct: 192 VHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTR--PGLKAAVVNLDDGFGRTLFA-SR 248

Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +   R + V    +    +  + +   HN     ++++G+      PL G F V N L  
Sbjct: 249 DPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAV 308

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG   A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+
Sbjct: 309 AGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 368

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
               R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G   
Sbjct: 369 HAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFAR 428

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               I + +R  AI  AI M +  D++++AGKGHE
Sbjct: 429 PDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHE 463


>gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 499

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 235/468 (50%), Gaps = 38/468 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     +D H F+  A+  GA A++V    +++     
Sbjct: 29  KITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDVNIE----- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 84  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 139 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256
                  FTNL +DH+DYH+T   Y + K  LF  L    S      A++ ADD  S E 
Sbjct: 199 CNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGNDLSTIDKKIAVLNADDP-SVEY 257

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +       +  +S    + +    L G F VYNA
Sbjct: 258 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVNLNLVGRFNVYNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 316 LAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I   
Sbjct: 375 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 431

Query: 436 IPGFIEKGN---RIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             GF++  N   ++E     AI  AI M +  D++++AGKGHET  I+
Sbjct: 432 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 479


>gi|187930162|ref|YP_001900649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12J]
 gi|187727052|gb|ACD28217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12J]
          Length = 514

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 171/488 (35%), Positives = 244/488 (50%), Gaps = 38/488 (7%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA ++GN   + DG   IPQAI  GA A++  +        A +R
Sbjct: 32  DLTSDTRKLKTGDVFVAYVLGNARQRGDGRPHIPQAIEAGASAVLAEAHGYAMPADAPVR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLYG-KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               IL VD   +     A++ YG   PE   ++ VTGT+GK+S + ++ Q   + G   
Sbjct: 92  ----ILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147

Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +G   T  + + A     TTP  I L ++L+ L   G   +++E SSHGL+Q R+DG 
Sbjct: 148 AVVGTLGTGFVDALATTG-FTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGT 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +     FTNL +DH+DYH T   Y  AK RLF         A+I  DDA    +++   N
Sbjct: 207 RFDIAVFTNLTQDHLDYHGTMAEYELAKARLFG--WQGLRAAVINRDDAAGVRLLQ---N 261

Query: 263 AGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQ 311
           A   V ++ Y          G    L+      ++   T  V+G            G F 
Sbjct: 262 ARADVETIEYGIDGDAAAQHGARQWLRATNVRAHRTGTTFDVDGSFGRATVHVSTVGLFN 321

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L   G  +A G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE 
Sbjct: 322 VSNLLAVLGALLAAGVSWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQ 380

Query: 372 ILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L+ +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP+ I
Sbjct: 381 TLRALAPITEARGGKLWAVFGCGGDRDPGKRPQMGSIAERLAPHVVLTSDNPRSEDPQHI 440

Query: 429 RAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             EI  G+       +  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D
Sbjct: 441 LDEIADGMDNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEIA-GRKRPFSD 499

Query: 486 CDIIREIL 493
            + +R  L
Sbjct: 500 QEHVRLAL 507


>gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
 gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
          Length = 492

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 163/489 (33%), Positives = 231/489 (47%), Gaps = 36/489 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
            AIA GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDD---GKFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                AII  DD Y  E+  R     C  L+V   G   H     A       T S +G 
Sbjct: 230 HGLQHAIINVDDGYGAELAGRLKK-DCLDLAVYSYGFSEH-----ADIRITNFTASSDGM 283

Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  F  P         L G F   N      L  A G     VL  L K+    GR + +
Sbjct: 284 EAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLAVLAKIRPASGRMDCI 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             NS    + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+
Sbjct: 344 -MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAV 402

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAG 466
             AD  +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AG
Sbjct: 403 QGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEVDRAVAIRYAVEQAAANDIILIAG 462

Query: 467 KGHETVHIV 475
           KGHE    V
Sbjct: 463 KGHENYQDV 471


>gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 492

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 223/460 (48%), Gaps = 35/460 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF         A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLF--YWHGLQHAVINVDDEYGAELVGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L V Y   F     +         T S +G +  F  P         L G F   N    
Sbjct: 258 LVV-YSYGFSEQADI----RITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAV 431

Query: 437 PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           P     + +R  AIR A+E     D++++AGKGHE    V
Sbjct: 432 PNPERVEADRAAAIRYAVERAAANDIILIAGKGHENYQDV 471


>gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 511

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/493 (29%), Positives = 250/493 (50%), Gaps = 39/493 (7%)

Query: 13  ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L+N + I P +   +++IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAEA 
Sbjct: 8   KLLNLVGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAA 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           ++ SA   ++   +      +++ DN         +  + +    +  + VTGT+GK+++
Sbjct: 68  IIGSAA--KEKIGSFDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ + ++SG  +   G   +    F++    TT     L K L+           +E
Sbjct: 126 TFLLEYLLKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246
            SSH + Q R+ G +     FTNL +DH+DYH   ++YF  K +LF    L+ K+  +++
Sbjct: 186 VSSHSIAQKRISGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGISVL 245

Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHN-KQQVT 292
             DD +    S ++ KR+     ++    ++          KF      C  H  K+++ 
Sbjct: 246 NHDDPWISKLSSDIEKRSSLVSTKITESEFENDDFFFVTDKKFTENGSTCIFHTPKEKIQ 305

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-T 351
           + V         PL GEF + NA+ A  +   +      + + +      PGR E +   
Sbjct: 306 LFV---------PLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEID 356

Query: 352 NSRGGR----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           N    R    + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD GKRP+MG IA 
Sbjct: 357 NDDVARSLPTVIVDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAE 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +D   +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++
Sbjct: 417 EFSDQLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIVLI 476

Query: 465 AGKGHETVHIVTN 477
           AGKGHE   I+ +
Sbjct: 477 AGKGHEDYQILND 489


>gi|327404195|ref|YP_004345033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
 gi|327319703|gb|AEA44195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
          Length = 486

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 155/481 (32%), Positives = 245/481 (50%), Gaps = 31/481 (6%)

Query: 24  QW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           QW    +  ++ + SDSR   AG +F+A+ G + D H FI Q I +G   IV      + 
Sbjct: 15  QWIGPTDVVVSALVSDSRKALAGTLFIAVKGTQVDAHDFISQVIEKGCRVIVAERVIEVP 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           +       +  +LVV N+   L   A   Y  +P   L + G +G +   +    +    
Sbjct: 75  E-------HVTVLVVPNSALALGELAHAFY-DYPSRSLELVGVTGTNGKTTTTTLLHDLY 126

Query: 141 GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               +++G  ST+ +      +    TTP  I L   L+ +  QG +H  +E SSH + Q
Sbjct: 127 TELGYKVGLLSTVVNLIGKEVIPSTHTTPDQIALNALLADMVDQGCSHCFMEVSSHAISQ 186

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+ G+    G+FTN+  DH+DYH T + Y  AK   F+E L K++ A++ ADD   K  
Sbjct: 187 HRIAGLVFKGGAFTNITHDHLDYHGTFKEYIAAKKTFFDE-LKKDAFALVNADD---KNG 242

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M    N   +V + G +       KV   ++   + +++ G   +    L G+F  YN  
Sbjct: 243 MVMVQNTKAKVSTFGLKTHADFKAKVLE-NSFSGLLLTING--IELWTRLIGDFNAYNIA 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G+   +G DS  VL  L KL  V GRF+F  + +    + VDYAHT ++LE +LK I
Sbjct: 300 TVYGISQLLGSDSTEVLTVLSKLEAVDGRFQFTKSETDITAV-VDYAHTPDALENVLKTI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             I +   ++I V GCGGDRD  KRP M +IA +L++  I+T DNPR+EDP +I  ++  
Sbjct: 359 ENIRTRNEQVITVVGCGGDRDALKRPEMARIACELSNKVILTSDNPRTEDPAEILKQMEA 418

Query: 435 GIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+        +   +R +AI+TA+ +   +D++++AGKGHE    + NG K    D D++
Sbjct: 419 GVGAHQSMKVLTILDRDQAIKTAVSLAQPKDIILIAGKGHEKYQDI-NGVKHPFDDFDVV 477

Query: 490 R 490
           +
Sbjct: 478 K 478


>gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 526

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 228/470 (48%), Gaps = 56/470 (11%)

Query: 55  DGHLF--IPQAIAQGAE-AIVVSSAYSLQDFSAT---IRSNTPILVVDNTRKFLSLFASR 108
           +G LF  +P     GA+ A   S+A  L D        R + PI+VVD+ R  L   +S 
Sbjct: 37  EGGLFAGVPGLHVHGAQFADSSSAAAVLTDHDGVEKVTREDLPIIVVDDVRAVLGEVSSA 96

Query: 109 LYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTT 164
           +Y  HP     ++ +TGT+GK++ +  V+      G+S+  IG T T I+     + LTT
Sbjct: 97  VY-DHPSRDLTVIGITGTAGKTTTSYMVEAALLHHGISTGLIGTTGTRINGEKVPSTLTT 155

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P    L    + +  +GVTHV +E SSH +   R+ G       FTNL +DH+D+H T +
Sbjct: 156 PEAPNLQALFAMMKKRGVTHVVMEVSSHAIALGRVLGTHFSVAGFTNLSQDHLDFHPTME 215

Query: 225 AYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV- 282
            YF  K RLF+E  P  +  +++  DDA+ + +     +      +V  +    H   + 
Sbjct: 216 DYFQTKARLFKEDSPLHAETSVVCIDDAWGQRLATMLPHP----FTVSTEAASEHDASLQ 271

Query: 283 -------CAIHNKQQVTISVEG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   ++ +    T  + G    +     P+PG F V NA++A GL +  G+ +   
Sbjct: 272 PDVWAGPSSVMDNGVQTAELYGFGANEMTLHIPMPGRFNVANAMLAMGLLVKTGMKAEDA 331

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           +E L  +  VPGR E +    +     VDYAH   ++  +L  +R    GRI +V G GG
Sbjct: 332 IEGLSTV-TVPGRLERIDCG-QDFMAVVDYAHKPGAIAAVLDTLRAHVRGRIAIVVGAGG 389

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---------------- 436
           DRD  KRPIMG+ A   +D+ IVTDDNPRSEDP  IR +++ G                 
Sbjct: 390 DRDHSKRPIMGREAALRSDLVIVTDDNPRSEDPASIRQQVVAGAKEVADHVDVDRADEPR 449

Query: 437 -----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                      P   E G+R EAIR AI+     D ++VAGKGHET  ++
Sbjct: 450 NKVKTEGSEHRPTIREIGDRREAIRAAIQWTQPGDAVIVAGKGHETGQLI 499


>gi|317970555|ref|ZP_07971945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0205]
          Length = 503

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 157/478 (32%), Positives = 240/478 (50%), Gaps = 35/478 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR +  G +FV + G   DG  F P+A+  GA   V+    S  +       +
Sbjct: 25  VQGVSCDSRRVCPGTVFVGLPGATVDGGTFWPEALQLGAALAVIGR--SAAEARPPADGD 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++V D   ++  L A+  + +  +   ++ VTGT+GK++    ++ +    G  +   
Sbjct: 83  AVLVVSDPVSRWAGLLAAEFWQQPSQRTALIGVTGTNGKTTTTYLLEHLASACGYPAALF 142

Query: 148 G------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           G      P  +I++     + TT     L   L+  +  G    ++E SSH LDQ R+ G
Sbjct: 143 GTLINRWPGHSITA-----QHTTAFADELQAQLALAAESGARIAAMEVSSHALDQQRISG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +     FTNL +DH+DYH + +AYF AK +LF   LL  E+ A++  DD + K++ +R 
Sbjct: 198 CRFAGAIFTNLTQDHLDYHPSMEAYFEAKAKLFAAPLLAPEARAVVNVDDPWGKQLAERL 257

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNAL 316
              G R      +       ++ A+    Q      I+  G+   F  PL G+F + N L
Sbjct: 258 ---GDRCWRASLEPDSDADLRMEALQMGSQGVSGTLITPLGRGA-FSSPLLGKFNLMNLL 313

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT------NSRGGRIYVDYAHTSNSLE 370
            A G+ +  G+    +LE L     VPGR E V        ++    + VDYAHT + LE
Sbjct: 314 EAVGVLLQQGLPLGAMLEALGSFKGVPGRMERVQVARADCGDAAAPAVLVDYAHTPDGLE 373

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             LK  R    G++I VFGCGGDRD+ KRP M  IA  LAD  +VT DNPR+EDPE+I  
Sbjct: 374 SALKACRPFVEGQLICVFGCGGDRDRTKRPQMAAIAARLADQVLVTSDNPRTEDPEQILK 433

Query: 431 EIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +++ GIP         +R ++I  AI M   +D++++AGKGHE   I+  G KK+  D
Sbjct: 434 DVLAGIPEGTPVQVDVDRAQSIAAAIAMAGPKDLVLIAGKGHEDYQIL--GTKKVHFD 489


>gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae NCCP11945]
 gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Neisseria gonorrhoeae NCCP11945]
 gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
          Length = 492

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 228/478 (47%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+  GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + N +    + A+++Y    +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDV-QGVKHRFSDLEIVGQAL 488


>gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
          Length = 493

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 148/465 (31%), Positives = 230/465 (49%), Gaps = 32/465 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLIEKILSDYGY 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 132 HTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L        +  A++ ADD  S E 
Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDLSTTDKKIAVLNADDP-SVEY 250

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +       +  +S    + +    L G F VYNA
Sbjct: 251 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 309 LAAITVALVEGIPLTNISDSLSTLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I  G
Sbjct: 368 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAITKDIEKG 427

Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                    ++E     AI  AI M +  D++++AGKGHET  I+
Sbjct: 428 FSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 472


>gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
 gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
          Length = 498

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 170/499 (34%), Positives = 249/499 (49%), Gaps = 29/499 (5%)

Query: 1   MKLQDLIYKDF--PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL+DL+  +   PE    L +        +I  ++++S   + G +F+ + G + DG  
Sbjct: 1   MKLKDLLNPNLLPPEYHPALDM--------EITGLATNSHACKPGDLFLGMPGTRVDGGD 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENI 117
           F P AIA GA A +VS + +      T     P ++   +     +  A+  Y  HP   
Sbjct: 53  FWPSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTTACAEIATAFY-NHPAQT 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYL 170
           L + G +G +   +    I     L S    PT+ + +       F +    TTP  + L
Sbjct: 112 LKLVGVTGTNGKTTTTHLI---EFLLSNLDQPTALLGTLYTRWPGFQEVAVHTTPFAVEL 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L+     G     +E SSH L Q R+ G       FTNL +DH+DYH T   YF AK
Sbjct: 169 QHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFRVAVFTNLTQDHLDYHPTMDDYFEAK 228

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             LF +    +  AII ADD Y K++M R  +      SV      I    +       +
Sbjct: 229 ALLFSDDY-LQGKAIINADDDYGKKLMARLGSDRFWSYSVSDPSADIWADSLVYQPTGIK 287

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +        F  PL G++ + N L A G  +A+G+D + +++ L     VPGR E V 
Sbjct: 288 GVLHTPMGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVQ 347

Query: 351 TNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +      + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DL
Sbjct: 348 LSPEQDITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADL 407

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAG 466
           +D+A+VT DNPR+EDP++I  +I+ GIP  ++    G+R +AIRTAI+     D +++AG
Sbjct: 408 SDLAVVTSDNPRTEDPDRILQDILAGIPADVKPIVIGDRAKAIRTAIDEAQPGDGVLIAG 467

Query: 467 KGHETVHIVTNGEKKMSVD 485
           KGHE   I+  G +K+  D
Sbjct: 468 KGHEDYQII--GTEKVHFD 484


>gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
 gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
          Length = 482

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 254/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+       +D      +
Sbjct: 22  EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAIAILC------EDMPEEPVA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG     +  + VTGT+GK+++A+ +    +  G   ++
Sbjct: 76  GITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIATLLYNTFRYFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L   L  ++ +G  +V +E SSH + Q R+ G+
Sbjct: 133 VGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F++ LPK + ++   DD      ++    
Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNAFSLTNLDDKNGLVMTQNTRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R LS  ++G+ +  H + +    N  ++ +   GK           F   N L
Sbjct: 252 KVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ V  + +G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGITAIVDYAHTPDALINVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+     K      +R EAIRTA  +  K DV++VAGKGHE    +  G K    D +++
Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477

Query: 490 REIL 493
           +EI 
Sbjct: 478 KEIF 481


>gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
 gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
          Length = 499

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 151/468 (32%), Positives = 233/468 (49%), Gaps = 38/468 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 29  KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 84  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 139 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L    S      A++ ADD  S E 
Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 257

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +       +  +S      +    L G F VYNA
Sbjct: 258 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGQIEVSLNLVGRFNVYNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 316 LAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I   
Sbjct: 375 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 431

Query: 436 IPGFIEKGN---RIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             GF++  N   ++E     AI  AI M +  D++++AGKGHET  I+
Sbjct: 432 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 479


>gi|326382555|ref|ZP_08204246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326198674|gb|EGD55857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 689

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 154/460 (33%), Positives = 231/460 (50%), Gaps = 20/460 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R ++  +  ++   AG++F A+ G++  G  +  QA A GA  ++   A          
Sbjct: 39  DRDVSGATLRAQDAGAGYLFAALPGDRTHGANYAAQARAAGAAGVLTDPAGLALIREDPE 98

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++  +LV    R+ L   ++R+YG       ++ +TGTSGK++ A   +   + +G   
Sbjct: 99  AADVTVLVHARPREVLGAVSARIYGDPSSRLTLIGITGTSGKTTTAYLAEAALRAAGRVV 158

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +      + LTTP    L +  + ++ +GV  V +E SSH L   R+DG  
Sbjct: 159 GLVGTVEIRVDGTVVPSSLTTPEAPDLQRMFAVMAERGVDTVVMEVSSHALALGRVDGCH 218

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHN 262
              G FTNL +DH+DYH+T   YF AK RLFE   P +   A +  DD + +     A  
Sbjct: 219 FAVGGFTNLSQDHLDYHRTMDEYFAAKARLFEAGSPTRARQAAVCVDDVWGRRAADVAAQ 278

Query: 263 AGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAA 319
                ++V   G   +  ++ V      Q V I+  +G + +   PLPG + V NAL+A 
Sbjct: 279 GAATPITVSTTGPADWSVVRTVRTDAGSQTVLIAGPDGAETEMTVPLPGAYNVANALLAV 338

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIR 377
            + +A G D    +  L  +  VPGR E V    RG      VDYAH   ++E +L  + 
Sbjct: 339 AMTVAAGTDVDTAVAGLAHV-AVPGRLEKV---ERGQEFLAVVDYAHKPAAVEAVLATLG 394

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-- 435
             T GR+ VV G GGDRD  KRP+MG  A   AD+ IVTDDNPRSE P  IRA ++ G  
Sbjct: 395 AQTRGRLAVVLGAGGDRDTEKRPLMGAAAARGADLVIVTDDNPRSEPPADIRAAVLAGAR 454

Query: 436 ----IPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                 G I E G+R +AI  A++     DV+++AGKGHE
Sbjct: 455 SVDAARGEIREIGDRRDAIAAAVDWARPGDVVLIAGKGHE 494


>gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 492

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 235/468 (50%), Gaps = 38/468 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I +G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  EITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P +VV + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----IPKIVVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 132 HTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L        +  A++ ADD  S E 
Sbjct: 192 CNFKIAVFTNLTKDHLDYHGTFHEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDP-SVEY 250

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G   +  +  K +       +  +S    + +    L G F VYNA
Sbjct: 251 FKKITSA--EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 309 LAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   ++G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I   
Sbjct: 368 ISEFSTGKVITVFGCGGDRDTKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 424

Query: 436 IPGFIEKGN---RIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             GF++  N   ++E     AI  AI M +  D++++AGKGHET  I+
Sbjct: 425 EKGFLQNNNLNYKVEVDRELAITHAINMASSNDIVLIAGKGHETYQIL 472


>gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
 gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
          Length = 492

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 167/507 (32%), Positives = 237/507 (46%), Gaps = 37/507 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   DFP         P+         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETDFP---------PLPCENAAGRLLHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
            A+A GA  I          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFIFWDDD---GKFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALKETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A+I  DD Y  E++ R     C  L+V   G   H     A       T S +G 
Sbjct: 230 QGLQHAVINIDDGYGAELVCRLKK-DCPDLAVYSYGFSEHADIRIA-----DFTASSDGI 283

Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              F  P         L G F   N      L  A G     VL+ L K+    GR + +
Sbjct: 284 AAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLGKICPASGRMDCI 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             NS    + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+
Sbjct: 344 -MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGTALWCVFGCGGNRDRGKRPLMGAAAV 402

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + AD  ++T DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AG
Sbjct: 403 EGADKVVITSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVERAAANDIILIAG 462

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE    V  G K    D +I  + L
Sbjct: 463 KGHENYQDV-QGVKHHFSDFEIAEKAL 488


>gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
 gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
          Length = 482

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 254/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+       +D      +
Sbjct: 22  EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAIAILC------EDMPEEPVA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG     +  + VTGT+GK+++A+ +    +  G   ++
Sbjct: 76  GITYVRVKDSEDAVGKIATTFYGDPTSKLKLVGVTGTNGKTTIATLLYNTFRYFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L   L  ++ +G  +V +E SSH + Q R+ G+
Sbjct: 133 VGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F++ LPK + ++   DD      ++    
Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNAFSLTNLDDKNGLVMTQNTRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R LS  ++G+ +  H + +    N  ++ +   GK           F   N L
Sbjct: 252 KVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ V  + +G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGITAIVDYAHTPDALINVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+     K      +R EAIRTA  +  K DV++VAGKGHE    +  G K    D +++
Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477

Query: 490 REIL 493
           +EI 
Sbjct: 478 KEIF 481


>gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 495

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 154/448 (34%), Positives = 222/448 (49%), Gaps = 25/448 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI--- 92
           DSR +  G  FVAI G    G  F+ QA A GA A++         F     +  P+   
Sbjct: 28  DSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVL---------FEPPAPNGMPVPAD 78

Query: 93  -LVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            + V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G  +  +G 
Sbjct: 79  AIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLGT 138

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D +      
Sbjct: 139 LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVAV 198

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH     Y  AK +LF     K   A++  DDA+ + +      A  R +
Sbjct: 199 FTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDAFGRTLFASLDPA-LRAI 255

Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V  + +    +  + +   HN     ++++G+      PL G F V N L  AG   A+
Sbjct: 256 GVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALWAL 315

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R+I
Sbjct: 316 EIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDRLI 375

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEK 442
            VFGCGG+RD GKRP M  IA   AD+AIVTDDNPRSED + I A+I+ G       I +
Sbjct: 376 CVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPDAAIVQ 435

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +R  AI  AI M +  D++++AGKGHE
Sbjct: 436 RDRAAAIHQAIGMASASDIVLIAGKGHE 463


>gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis N1568]
          Length = 492

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVCRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V Y   F     +  I      T S +G    F  P         L G F   N    
Sbjct: 258 LAV-YSYGFSEQADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|159902952|ref|YP_001550296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888128|gb|ABX08342.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9211]
          Length = 505

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 158/496 (31%), Positives = 250/496 (50%), Gaps = 57/496 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P+  ++ +I  +SSDSR ++ G +F  + G K++G  F  +A   GA A VV    S +D
Sbjct: 17  PIDLQDPEIKNISSDSRCVKKGDLFFGLPGQKDNGGAFCNEAFLAGAVAAVVGD--SARD 74

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQ 138
                + N  ++V D   +++   AS  +GK P   +A+ G +G +   +    ++ + +
Sbjct: 75  CIPHDKKNLVVVVPDPVSQWMGEIASVFWGK-PSLEMALIGVTGTNGKTTTTHLIEHLSK 133

Query: 139 RSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            SG ++  +G   +    +++ +  TT     L   LS + + G +  ++E SSH L Q 
Sbjct: 134 SSGKATALLGTLINRWPKYSEQSIHTTSFGDTLNAQLSQIVASGASLCAMEVSSHALSQR 193

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKE 255
           R+ G+      FTNL +DH+DYH++ +AYF AK  LF+  L K  ++ A++  DD +   
Sbjct: 194 RVAGLYFSGAIFTNLTQDHLDYHKSMEAYFEAKALLFQSYLIKDGQARAVVNIDDQWGFR 253

Query: 256 VMKRAHN---------------------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + KR                         G ++ + G +G FIH             T  
Sbjct: 254 LAKRLGRNCWKSSLDLKNIQSVRPELFITGIKMTAAGAEG-FIH-------------TPF 299

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            EG    F+ PL G F + N L + G+ +  G     +L        VPGR E V    +
Sbjct: 300 GEGP---FMTPLIGRFNLMNLLQSIGVLLQQGFKLDTLLHATATFSGVPGRMEQVKVPVK 356

Query: 355 GGR-----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   + VDYAHT + L+  LK +R   SG++I VFGCGGDRD+ KR  MG+IA ++
Sbjct: 357 SDSLPMPIVLVDYAHTPDGLKNALKAVRPFVSGKLICVFGCGGDRDKSKRSYMGEIAAEI 416

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
           +DI IVT DNPR+EDP  I  +I+ GIP   E   + +R +AI  +I      D++++AG
Sbjct: 417 SDIVIVTSDNPRTEDPMAIIEDILSGIPTTFEAIVELDRCKAIEMSILHAKSNDLIIIAG 476

Query: 467 KGHETVHIVTNGEKKM 482
           KGHE   I+  G+KK+
Sbjct: 477 KGHEDYQIL--GDKKI 490


>gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
 gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
          Length = 481

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 241/466 (51%), Gaps = 56/466 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++A  +FVA  G   DGH +I  AI  GA AIV       ++  + I  N   + V
Sbjct: 29  DSRKVEAENVFVATRGTASDGHQYIATAIENGAVAIVC------EELPSEINPNITYVKV 82

Query: 96  DNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +++   L   AS  Y        ++ VTGT+GK+++A+ + Q+ +  G  S   G  ST+
Sbjct: 83  EDSSDALGKMASAWYDFPSTKMTLVGVTGTNGKTTIATLLYQLFRELGHKS---GLLSTV 139

Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++  D  +    TTP  + L   L+ +   G  +  +E SSH +DQHR+ G++     F
Sbjct: 140 CNYVNDLAVEATHTTPDALALNALLAQMVDAGCEYAFMEVSSHSIDQHRISGLEFDGAIF 199

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-------- 261
           TN+ RDHIDYH T + Y  AK + F+  L  ++ A+  ADD     +++ +         
Sbjct: 200 TNITRDHIDYHLTFENYLKAKKQFFDN-LSTDAFALTNADDKNGLVMLQNSKAKKYTYSL 258

Query: 262 ----NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               +   R+L  G++G  + +       N ++V +S  GK           F   N   
Sbjct: 259 RGMADFKTRILEHGFEGMLLDM-------NDKEVNVSFIGK-----------FNASNLSA 300

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G  + +G D   VL  +  LH V GRFE + + + G    VDYAHT ++L  ++  I 
Sbjct: 301 VFGAAVLLGQDELEVLRIISSLHSVSGRFETLHSPA-GYTAIVDYAHTPDALVNVIGTIN 359

Query: 378 TIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            I   +GR+I V GCGG+RD+GKRP+M + A++ +  AI+T DNPR E+P++I  +++ G
Sbjct: 360 QILQGNGRLITVVGCGGNRDKGKRPMMAREAVNGSWKAILTSDNPRFEEPQEILNDMLAG 419

Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +   +EK       +R EAI+TA  +    DV++VAGKGHE   I+
Sbjct: 420 LD-VVEKAKSLTIVDRREAIKTACALAQAGDVVLVAGKGHEDYQII 464


>gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 956

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 229/446 (51%), Gaps = 18/446 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V +D+R I+ G IFV I G   DGH FI  A+ +GA AI+V    + +D         P
Sbjct: 37  KVQTDNRKIKPGDIFVCIQGANFDGHNFINSALEKGA-AIIVCREINKRDI--------P 87

Query: 92  ILVVDNTRKFLSLFASR--LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            + V +TRK  ++ A    L  K P  ++ +TGT+GK++ +  + +  +  G     IG 
Sbjct: 88  YIKVKDTRKAAAVIARTVMLPQKIPYTLIGITGTNGKTTTSLLLYEALRNLGFRCGWIGT 147

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               I   A  +  TTP  I L +    +    V +V +E SSH L   R+ G+K     
Sbjct: 148 LGYYIEGKAFPSERTTPDIIELNEIFGQMIEAKVDYVVMEVSSHSLSLDRIYGVKFDYCL 207

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           F+NLGRDH+D+HQT + Y  AKM  FE+     S ++I   DA+  ++         +V 
Sbjct: 208 FSNLGRDHLDFHQTLENYGKAKMSFFEQGAKDGSISVINTADAFGVQIKDMLKEKQAKVY 267

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           S+G          +    N     +  E  +      L G F + N  +      A+G  
Sbjct: 268 SLGGNDAEFQYSDIKTDINTSSFKLIAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFS 327

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   L+ +  V GR E V  N   G I++DYAHT  +++ +LK +  +   RI+ + 
Sbjct: 328 PEAIHNSLKDIPPVQGRLERVENNFNIG-IFIDYAHTPEAIDNVLKAVEDLPHKRILCLI 386

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG----IPGFIEKGN 444
           G GGDRD+GKRP+M K AL+ +D+ I++DDNPRSE+PE+I  +I+      +P +I + N
Sbjct: 387 GAGGDRDKGKRPLMLKSALNHSDVVIISDDNPRSENPERIIKDIVSSSDIFLPWWIIR-N 445

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           R +AI + I +  ++D++++ GKG E
Sbjct: 446 RQQAISSIIRLAQEEDIVLICGKGSE 471



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 19/209 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N +S DSR I+ G +F+AI G K DGH ++   +       +    Y L  FS       
Sbjct: 537 NYLSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLNQFS----EEN 592

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
               V+N  + + L   +     P   +A+TG++GK++    + Q+ Q S          
Sbjct: 593 SYYQVENCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSA--------- 643

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
             + + A +N +     I L K +  +  +    +    ++H G      D      G  
Sbjct: 644 PVLKTLANENNI-----IGLCKTIIRIKPEQQYAIFELGTNHFGEIAALADVANPDIGII 698

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            N+G  H++Y   ++  F  K+ LF+  L
Sbjct: 699 LNIGPSHLEYFGDEEGVFREKITLFKRPL 727


>gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
 gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
          Length = 499

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 160/494 (32%), Positives = 242/494 (48%), Gaps = 49/494 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ +  DSR +  G +F A+ G + DG  FI +A+ +GA AIV       Q   A  
Sbjct: 22  DRPISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGAVAIVT------QKMPAHP 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC---QRS 140
                ++ V + R  L+  A R Y K P+    ++ VTGT+GK++V   ++      QR 
Sbjct: 76  PGKVTVIQVADARATLARVAQRYY-KFPDRDMTVIGVTGTNGKTTVTHLLKHFLNGDQRV 134

Query: 141 GLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           GL    ++ +G   T+ ++      TTP  + +   ++ +   G     +E SSHG+DQ 
Sbjct: 135 GLLGTINYDLG-ARTVPAYR-----TTPESLDIYGMMAQMRDAGCRQAVMEVSSHGIDQQ 188

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---LLPKESPAIIYADDAYSK 254
           R+ G++  A  FTNL RDH+DYH+T  AYF  K RLF       PK   A++  DD Y  
Sbjct: 189 RVAGLQFGAAVFTNLTRDHLDYHKTLDAYFEVKKRLFTGGTGAAPKV--AVVNFDDPYGV 246

Query: 255 EV---MKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            +   +KR H +   V     L    + + +HL             +   G   +   PL
Sbjct: 247 TLAASLKREHQSAKLVTFGENLQADVRAENVHLN-----FTNSTFRLVWPGGTMEIESPL 301

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G + V N L A      +G D  + L  L     VPGR E +    +   + VDYAHT 
Sbjct: 302 IGRYNVSNLLAAIAAAWGLGRDPFVFLARLRAFKGVPGRMERI-DEGQPYNVLVDYAHTD 360

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   L  +R IT GR+ VVFGCGG+RD+ KRP+M K   + AD A  T DNPR+E   
Sbjct: 361 DALRNALGMLRAITPGRLFVVFGCGGNRDRTKRPLMVKAVQEFADFAFATADNPRAEPLP 420

Query: 427 KIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           +I  ++  G+       +IE  +R  AI  A++     D L++AGKGHE+     +    
Sbjct: 421 QIFDDMKAGVLAPEKITWIE--DRRRAISLALDAAKAGDCLLIAGKGHESYQEFADTVIP 478

Query: 482 MSVDCDIIREILGL 495
              D  ++RE++G+
Sbjct: 479 FD-DRQVVRELIGI 491


>gi|327399670|ref|YP_004340539.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
 gi|327182299|gb|AEA34480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
          Length = 459

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 149/469 (31%), Positives = 238/469 (50%), Gaps = 37/469 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G++F AI G K D + F+P  +A+    +VVS       F      +   + V
Sbjct: 18  DSREVSEGFVFFAIKGTKVDANRFVPNILAKFKRVLVVSE----NGFD-----DERCIKV 68

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI----GPTS 151
           D+ RK + L A   +  HP   L V G +G +   +    +  RS   + +I    G T 
Sbjct: 69  DDVRKCMGLAADHFFN-HPSKKLKVVGITGTNGKTTTTYLL--RSIFDNSEIIGTTGWTL 125

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
               F  +N  TTP  + L + L+ ++     +   E SSH L  +R++G+      FTN
Sbjct: 126 KDERFKLNN--TTPESLDLHRILNRMAMANSEYCFTEVSSHALSFNRIEGVDFALKVFTN 183

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + +DH+D++   + Y   K+  FE L PK    ++ ADD+Y + ++  A       +S G
Sbjct: 184 ISQDHLDFYDNLENYAKTKLSFFERLKPK----VVNADDSYGRMLIDAA------TISYG 233

Query: 272 YQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +   F  +K +   ++    +  ++V  +      PL G++ +YN + A G+ +  G+D 
Sbjct: 234 FS-DFAFIKPIVYEYSLDGIKAKLNVARRTISITSPLIGDYNLYNIMAALGVALFFGVDF 292

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A + E + K    PGR EF   +  G    VDYAHT +++  +L+ +  I  GRII VFG
Sbjct: 293 ARIEEGIAKSKGAPGRLEFFQKD--GAYAVVDYAHTDDAMRNVLEALNKIKKGRIITVFG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRI 446
            GGDRD+ KRP MG IA  L+D+ +VT DNPRSE+P  I  +I+ GI      I + +R 
Sbjct: 351 AGGDRDRTKRPKMGSIAESLSDVVVVTSDNPRSEEPLAIIDDILEGISDRDRVIVEPDRF 410

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           EAI+ A+ M  K D++ + GKGHE   I+ +       D +++R +  L
Sbjct: 411 EAIKKALGMAEKGDLVTILGKGHEDYQILKDKTIHFD-DREVVRRLWNL 458


>gi|332976674|gb|EGK13514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 226/432 (52%), Gaps = 55/432 (12%)

Query: 91  PILVVDNTRKFL------SLF----------ASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           PI+ V N R  L      SL           +S L  + P+ ++AVTGT+GK++++  + 
Sbjct: 123 PIIFVANLRDILGSLIQISLLPPASLSSLTHSSDLQQQLPQ-VIAVTGTNGKTTISQLIA 181

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVS 186
           Q+CQ S ++  Q    S +   A + RL        TT   + + + L  +  +GV+ ++
Sbjct: 182 QLCQFSNVAQLQ---NSAVMGTAGNGRLDSLVQASHTTGDALAVQRFLRQMHDEGVSILA 238

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAI 245
           +EASSHGLDQ RL  + +    +TNL RDH+DYH   + Y  AK RLF+    P+ + A+
Sbjct: 239 LEASSHGLDQQRLQAVLVTVAVYTNLSRDHLDYHPDMEDYARAKARLFDTAYFPQLTHAV 298

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----IHNK-----QQVTISVE 296
           I ADD ++  + + A  +G +V     + +   + ++      + NK     + V I VE
Sbjct: 299 INADDEFASLMAETARRSGAKVWLYSLRSEQGTINEIANDAYFVANKIEPSLEGVKIEVE 358

Query: 297 GKDFDFLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +   PL G F V N L A    +A+GI+   +   + KL    GR + V  N+ 
Sbjct: 359 TSFGPLILHSPLLGRFNVANLLAAVAGVMALGIELEDLPALVTKLQGASGRMQRVNVNND 418

Query: 355 G----------GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
                      G   VDYAHT ++L  +L ++++  SG +  +FGCGGDRD+GKRP+M +
Sbjct: 419 AIDDQGTVLNQGVFIVDYAHTPDALTQVLTSLKSHCSGNLWAIFGCGGDRDKGKRPLMAQ 478

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQ 459
             L +AD  ++T DNPRSEDP +I  ++  G+     +      +R +AI+ A+E    Q
Sbjct: 479 AGLAVADKVVLTSDNPRSEDPAQILEDMQQGMSDEQHQKTKVIADRKQAIQYAVEHAGPQ 538

Query: 460 DVLVVAGKGHET 471
           D++V+AGKGHET
Sbjct: 539 DIVVIAGKGHET 550


>gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 492

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 153/484 (31%), Positives = 252/484 (52%), Gaps = 32/484 (6%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P ++ +  I   ++D+R ++ G +F AI G    G  +   A+A GA A++  +     D
Sbjct: 20  PAEYADVAITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAVAVITDT-----D 74

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR 139
            +  + ++ P++++ +  + +   A+ +YG   + +   AVTGT+GK++ A  +  I   
Sbjct: 75  GADFVTADVPVIILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAFMIDHILNT 134

Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G ++  IG  +  I+      +LTTP P  L   L+ L  +G T + +E SSH + Q R
Sbjct: 135 LGETTGLIGTVAVKIAGQEIPAQLTTPQPADLQAMLAALVERGGTSLVMEVSSHAIAQGR 194

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ I      FTNL +DH+DYH T   YF AK  LF E   +   AI   D  + +E++K
Sbjct: 195 IESINYSVAGFTNLTQDHLDYHNTLTEYFEAKALLFTEKFSRVGVAIT--DTPWGEELVK 252

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNA 315
           R +    RV ++  Q       +      +   T+++ G+++  +     LPG+F + NA
Sbjct: 253 RGNE---RVAALASQPDQPAGWRFT---GQADGTLTLRGENWGTITTSTNLPGDFNIANA 306

Query: 316 -----LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
                +VA     A  I +AL+  +     V PGR E V   +   RI VD+AH  ++L 
Sbjct: 307 ALAIAMVAKAGYSAEAISAALLASNGVNPQV-PGRMEVV---AEAPRIVVDFAHNEDALT 362

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             ++ +R  T G +IV+ G  GDRD  KRP+M K   + AD+ ++TDD+P SEDP  IRA
Sbjct: 363 KAIEALRPSTQGNLIVITGSAGDRDVTKRPLMAKTVAERADVLVITDDDPHSEDPAHIRA 422

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           ++I GIP    +IE  +R EAI   +     +D +++AG+GHET+  + NG      D +
Sbjct: 423 DLIAGIPTDTNWIEIADRREAITAMVTDACAEDTILIAGRGHETIQDM-NGTLVNLDDRE 481

Query: 488 IIRE 491
           + RE
Sbjct: 482 VARE 485


>gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
 gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
          Length = 482

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 254/484 (52%), Gaps = 43/484 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+       +D      +
Sbjct: 22  EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAIAILC------EDMPEEPVA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG     +  + VTGT+GK+++A+ +    +  G   ++
Sbjct: 76  GITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIATLLYNTFRYFG---YK 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D  +    TTP PI L   L  ++ +G  +V +E SSH + Q R+ G+
Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258
           K   G FTNL RDH+DYH+T + Y  AK + F++ LPK + ++   DD      ++    
Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNAFSLTNLDDKNGLVMTQNTRS 251

Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +    R LS  ++G+ +  H + +    N  ++ +   GK           F   N L
Sbjct: 252 KVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +G     VL  L  LH V GRF+ V  + +G    VDYAHT ++L  +L  I
Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGITAIVDYAHTPDALINVLNAI 358

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I V G GG+RD+GKRPIM K A   +D  I+T DNPR E+P+ I  +++ 
Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418

Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+     K      +R EAIRTA  +  K DV++VAGKGHE    +  G K    D +++
Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477

Query: 490 REIL 493
           +EI 
Sbjct: 478 KEIF 481


>gi|171462982|ref|YP_001797095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192520|gb|ACB43481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 516

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 172/502 (34%), Positives = 253/502 (50%), Gaps = 52/502 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIV---GNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +V +DSR IQ+G IF A     GN   DG  FI  A+  GA A+V    + L+D  + + 
Sbjct: 25  KVCADSRQIQSGDIFFAYPVGHGNALRDGRQFINAALENGAAAVV----FDLKDMDSQLT 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +     V N         S+ YG HP    NI+ VTGT+GK+S+  ++ Q    S   +
Sbjct: 81  DHPQCFAVKNLAAQAGQLCSQWYG-HPSKELNIIGVTGTNGKTSITQWLAQALDASNHRT 139

Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +G   T    +  Q    TTP    L   L+ L + G   V++E SSH L Q R+ G 
Sbjct: 140 AVLGTLGTGFPGALVQTG-YTTPDAPKLQTQLAELRNAGAKQVAMEVSSHALHQERIAGT 198

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRAH 261
            +   +FTNL +DH+DYH +   Y  AK +LF++   K   A+I  DDA+ +E+ M    
Sbjct: 199 DIQCAAFTNLTQDHLDYHGSMGDYAEAKAKLFQQAGLKH--AVINLDDAFGRELAMNLLA 256

Query: 262 NAGCRVLSV--------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--------- 304
             G +V +         G++     L+++ A    ++ T+S  G D  F++         
Sbjct: 257 KDGMKVWAYALSPSAFEGFEKFGDRLQRIYA----KETTLSGAGYDSIFVYGKVGSAQLH 312

Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIY-- 359
            PL GEF V NAL      ++ G+   +  + + +L+ V GR E +  G   + G +   
Sbjct: 313 IPLLGEFNVSNALAVWATLLSQGMRCEVAAQKVSQLNPVLGRMELIRFGKPQKAGSLLAV 372

Query: 360 VDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           VDYAHT ++LE  L+ +R +     G+I  VFGCGGDRD GKR +MG +A   AD  ++T
Sbjct: 373 VDYAHTPDALEKTLQALRPVADQRGGKIWCVFGCGGDRDAGKRALMGAVAERNADHILIT 432

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSEDP+ I   I  GI    +      +R  AI  AI   + +D+++VAGKGHET 
Sbjct: 433 SDNPRSEDPQAIMQMIRGGIQAESQNIQMIADRAAAIMAAIRHADARDIVLVAGKGHETT 492

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             + NG+K    D + IR   G
Sbjct: 493 QEI-NGKKFDFSDQEHIRLAAG 513


>gi|262380447|ref|ZP_06073601.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
 gi|262297893|gb|EEY85808.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
          Length = 499

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 246/482 (51%), Gaps = 57/482 (11%)

Query: 20  IFP----MQWRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVV 73
           I+P    ++W  +  +    DSR +QAG IF+A+  + +     +F   A++QGA  I+ 
Sbjct: 8   IYPGNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSHSNKTRIFAENALSQGALGIIS 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPEN---ILAVTGTSGKSSV 129
            S   +          T   V    R+++  +  + L    P N   ILAVTGT+GK+++
Sbjct: 68  ESDLGV----------TTAWVCPQVRQWMGGWQKQYLQATQPVNSARILAVTGTNGKTTI 117

Query: 130 A-------SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +       SF +Q C   G +   I P    S+       TT   + L  AL   SSQG 
Sbjct: 118 SRLIAELISFQKQPCAVMGTTGNGILPHLVASTH------TTLDALQLQNALHDFSSQGA 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++EASSHGL+Q RLDG ++    ++NL RDH+DYH T  AY +AK  LF+       
Sbjct: 172 NFVALEASSHGLEQGRLDGCEIEIAIYSNLSRDHLDYHGTLAAYADAKALLFK--FATLR 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD Y+  +++ A     R   + Y      L+   A +    +  S+EG  F  
Sbjct: 230 SAVINLDDDYAPVMLETAQANPARPKILTYS-----LQHPEADYRVSDIHYSLEGAKFKL 284

Query: 303 LFP---------LPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + P         L G+F + N LVA+ + +   G   + +L  + +L   PGR + +   
Sbjct: 285 IAPTGEYVVQSPLLGQFNIEN-LVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDV 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            R     VDYAHT ++L  +L  ++     ++  +FGCGGDRD+GKRP+M + AL+ AD 
Sbjct: 344 ER--LFVVDYAHTPDALTQVLVTLKRHVQNQLWAIFGCGGDRDRGKRPLMTQAALNDADP 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I+T DNPR+E PE+I A++ +G+        E  +R EAI+ A++     D++V+AGKG
Sbjct: 402 VILTSDNPRTESPEQIFADMKNGVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKG 461

Query: 469 HE 470
           HE
Sbjct: 462 HE 463


>gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
 gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
          Length = 536

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 166/495 (33%), Positives = 243/495 (49%), Gaps = 73/495 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++ DSR I    +F A+ G   DGH FIP A+         + A  L+D S    +
Sbjct: 45  EIKALTCDSRGIVPDSLFFALRGAAMDGHDFIPAAVQA------GAVAVVLEDESRAP-A 97

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
             P + V + R  ++  A+  +G +P + L + G +G +   +    ++ I + +G+ + 
Sbjct: 98  AIPWVRVRDGRSAMAWMAAEFHG-NPTSRLPLIGITGTNGKTTTTYLIEAILRAAGIPAA 156

Query: 146 QIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +G   TIS    D  +T    TP    L  A + L++ G     +E SSH L+Q R+DG
Sbjct: 157 VLG---TISYRFGDTVITASHTTPESTELQAAFTQLAAAGAKAFVMEVSSHALEQKRVDG 213

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256
                G F+NL RDH+DYH T ++Y  AK+RLF ELL   +      A I  DD     V
Sbjct: 214 CHFDVGIFSNLTRDHLDYHVTMESYREAKLRLFSELLKPTADKPLRRAAINMDDEQGATV 273

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFP---------L 306
             RA    C V+  G          +C    + +++++SV+G     + P         L
Sbjct: 274 AARA---ACPVIGYG----------ICRGDVRAEELSLSVDGIRARLVTPKGSIDVSSRL 320

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F + N L A    IA+ +    +   +E    VPGR E V  N  G  + VDYAHT 
Sbjct: 321 LGRFNLSNILAAVSAGIALDLPLEAIRAGIEGHATVPGRMERV-DNRCGITLLVDYAHTG 379

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE +L  ++ +  GRII VFGCGGDRD GKRPIMG+IA  ++D+AIVT DNPR+EDP 
Sbjct: 380 DALENVLTTLKELAQGRIITVFGCGGDRDPGKRPIMGRIAASMSDLAIVTSDNPRTEDPF 439

Query: 427 KIRAEIIHGI--------------------------PGFIEKGNRIEAIRTAIEMLNKQD 460
            I  +I  GI                           GF+   NR EAI  A+ +    D
Sbjct: 440 SILEQIRGGITPLGIREYGVDELADRSGKGLAEGADKGFVSLENRREAISLAVRLARPGD 499

Query: 461 VLVVAGKGHETVHIV 475
           ++++AGKGHE   I+
Sbjct: 500 IVLLAGKGHEDYQII 514


>gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 488

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 244/467 (52%), Gaps = 35/467 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++++S+ ++ G +F+AI G   DGH FI QAIA GA+A++       Q        +
Sbjct: 23  ITGITNNSKTVKPGDLFIAIAGYSIDGHKFIDQAIAAGAKAVIGEKEIGKQ--------S 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P + V ++RK L+L A R Y K+ +N   ++ +TGT+GK++ +  ++ I +  G +   
Sbjct: 75  VPYIKVTDSRKALALAAKRFY-KNEQNKAIMIGITGTNGKTTTSYMLKHILETCGHTCSL 133

Query: 147 IGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G    I +     A  N  TT   + L K L+  + Q V    +E +SH L QHR+ GI
Sbjct: 134 FGSVQNIVNGQVLPATTN--TTMDALELQKQLAASNDQVVI---MEVTSHALMQHRVYGI 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G FTNL +DH+DYH + +AYF AK+RLFE+L P    A+I A   + +  +     
Sbjct: 189 EFDYGLFTNLSQDHLDYHGSMEAYFGAKLRLFEQLAPA-GKAVIQAQGEWGEAFLASLKQ 247

Query: 263 AGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                + ++G     + L  V  I    Q T++ + K +D   PL GE  VYNA +A   
Sbjct: 248 RDVPYIYTLGGAEATLQLSNV-RIERPMQATLAEDHKAYDLKVPLLGEHNVYNAAIAFLT 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+++  +L  LEK   VPGRFE +  + +G  I +DYAHT ++    LK    +++
Sbjct: 307 ARLLGLNARKILAALEKFPGVPGRFELI-HHPKGANIVIDYAHTEDAFYHCLKTAEELSA 365

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            RII VFG  G+RD  KR  M  ++   +D  I+T D+   E  E++R ++ +   G  E
Sbjct: 366 RRIIHVFGFRGNRDTSKRQAMVNVSKRFSDFIILTMDDLNGESFERMRKKLENYQLG--E 423

Query: 442 KG----NRIEAIRTAIEMLNKQDVLVVAGKGHE----TVHIVTNGEK 480
            G    +R  AI  A E+    D + + GKGHE    + H+ T  +K
Sbjct: 424 NGVVIPDRTSAIAHAWELAENGDWVFITGKGHEAYRQSYHLPTQSDK 470


>gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 495

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/455 (33%), Positives = 223/455 (49%), Gaps = 25/455 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +  DSR +  G  FVAI G    G  F+ QA A GA A++         F      
Sbjct: 21  QVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVL---------FEPPAPD 71

Query: 89  NTPILV----VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGL 142
             P+ V    V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G 
Sbjct: 72  GLPVPVDAIAVLGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D 
Sbjct: 132 PTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH     Y  AK +LF    P    A++  DD + + +   + 
Sbjct: 192 VHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTR--PGLKAAVVNLDDGFGRTLFA-SR 248

Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +   R + V    +    +  + +   HN     ++++G+      PL G F V N L  
Sbjct: 249 DPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAV 308

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG   A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+
Sbjct: 309 AGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 368

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
               R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G   
Sbjct: 369 HAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFAR 428

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               I + +R  AI  AI M +  D++++AGKGHE
Sbjct: 429 PDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHE 463


>gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M01-240355]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   + +    VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G    F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M6190]
 gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis ES14902]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   + +    VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G    F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           ST-640]
 gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           020-06]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 223/460 (48%), Gaps = 35/460 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF         A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLF--YWHGLQHAVINVDDGYGAELIGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V Y   F     +         T S +G    F  P         L G F   N    
Sbjct: 258 LAV-YSYGFSEQADI----RITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLSAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 437 PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           P     + +R  AIR A+E     D++++AGKGHE    V
Sbjct: 432 PNPERVEADRAAAIRYAVERAAANDIILIAGKGHENYQDV 471


>gi|283783872|ref|YP_003363737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
 gi|282947326|emb|CBG86871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
          Length = 495

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 236/468 (50%), Gaps = 33/468 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   +G +FVA+ G++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAASGDLFVAVKGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y +  EN+  V  T   +   +  Q + Q S L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFYHEPSENMRLVGVTG-TNGKTTTTQLLAQWSQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT S + +   L+ L +QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGLLGKVTPTENTTGSAVDVQHELAGLVAQGATFGAMEVSSHGLIQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  LF         AI+ ADD   +  +  
Sbjct: 195 AALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFST--HHYGQAIVNADDEVGRRWLTN 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVY 313
             +A    +    +    G++  LK V   ++    TI  +    + +    L G F V 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRW--LKAVAVDYHDSGATIRFTSSWGEGEIESRLMGAFNVS 310

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L
Sbjct: 311 NLLLALATLLALGYPLADLLKTATRLQPVCGRMEVFSAPGKT-TVVVDYAHTPDALEKAL 369

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R    G++  VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+E+P  I  +I 
Sbjct: 370 QAARLHCGGQLWCVFGCGGDRDKGKRPLMGAIAEQYADVVVVTDDNPRTEEPRAIIDDI- 428

Query: 434 HGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             + G ++ G       R EA+  AI    + DV++VAGKGHE   I+
Sbjct: 429 --LAGMLDAGRARVMEGRAEAVTNAIMQAKENDVVLVAGKGHEDYQII 474


>gi|297626715|ref|YP_003688478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922480|emb|CBL57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 529

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 240/470 (51%), Gaps = 31/470 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P      +I +V  DSR +  G ++V + G +  G  F  QA A GA A++  +    +
Sbjct: 35  LPAGADHLQIVDVYLDSRSVLPGSLYVGLPGTRTHGANFAAQAAALGAVALLTDA----E 90

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQ 138
                  +  PI+V +  R  ++  A+R++G    ++L   +TGT+GK++ A  ++    
Sbjct: 91  GAELAADAGLPIVVAEQPRVAMAHMAARVFGDPTRDLLMIGITGTNGKTTCAFLIEGALI 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +G    ++G   TI    +   L       TTP    L    + +   G   + +E SS
Sbjct: 151 AAG---HRVGTIGTIGFRLEGEPLPSSRSTITTPESCDLQALFAVMREGGADAIVMEVSS 207

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L   R++G+     +FTNLGRDH+D+H+TQ+AYF AK +LF   +   S A+I  DD 
Sbjct: 208 HALALDRVEGVHFDVAAFTNLGRDHLDFHKTQEAYFEAKAKLFRPTM--TSRAVINGDDP 265

Query: 252 YSKEVMKRAHNAGC-RVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           + + +++RA  AG   V++ G+  +  +  L     I   + + ++  G+   F   LPG
Sbjct: 266 WGRILVERADAAGAPHVVTTGFDPERDYRVLDSTPTIEGGEHIELATPGEAMAFDIALPG 325

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           ++ V NA     +    G++    +  LEK  +VPGR + V       R+YVD+AHT  +
Sbjct: 326 QYNVANAATTIAVLAQAGVNLDRAVPGLEKA-LVPGRMQRVDLGPDSPRVYVDFAHTPQA 384

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +E  L  +     GR +VV G GGDRD+ KR  MG  A   AD+ +VTDDNPR+EDP  I
Sbjct: 385 VESALSAL----PGRTLVVLGAGGDRDEAKRGPMGVAAARHADVVVVTDDNPRTEDPATI 440

Query: 429 RAEIIHG---IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           RAE++ G   +P    I+  +R  AI  A+ M +  D + + GKGHET  
Sbjct: 441 RAEVLAGARQVPDTEVIDGLDRRHAIGLALGMAHAGDAVAILGKGHETTQ 490


>gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
 gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
          Length = 529

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 157/493 (31%), Positives = 245/493 (49%), Gaps = 29/493 (5%)

Query: 13  ELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +L+NQ  I P          ++  + +DSR +QAG +F+ + G++ DG  F+ +A+ +GA
Sbjct: 18  QLLNQAGIQPQVVQGSLEGVQVRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALTRGA 77

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLSLFASRLYGKHPENILAVTGTSGK 126
            A +++     +        + PILV+  +   + L+  A+  YG     +  V  T   
Sbjct: 78  VAALIAQEAWEKVSGEAGGGSQPILVLPRSGINRALAQVAAAFYGFPARQLTLVGVTGTN 137

Query: 127 SSVAS--FVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
               +   ++ + Q +G  +  +G   +      +    TT  P+ L ++L      G  
Sbjct: 138 GKTTTTHLIEHLLQAAGRPTALLGTLYNRWPGHCEVAPHTTLFPLELQRSLRQAKEAGAE 197

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKES 242
              +E SSH L Q R  G    A  +TNL +DH+D+H + + Y+ AK  LF+ E L  + 
Sbjct: 198 VAVMEVSSHALAQDRAWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLFQPEYL--QG 255

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--------NKQQVTIS 294
            A++ ADD   + +++    A     +   Q     L+ + A+         N  Q T+ 
Sbjct: 256 RAVVNADDEGGRRLLETI-PASLEPWAYSLQ----PLEGIPALWPGDVQVHPNGLQATLH 310

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G F + N L A G+ + +GI   L+   L     VPGR E V    +
Sbjct: 311 TPLGTLAVAAPLVGSFNLANLLAAVGVALHLGIPLELIQAALPHFPGVPGRMERVTLPGQ 370

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + LE +LK +R    GR+I VFGCGGDRD+GKRP MG+IA   AD  +
Sbjct: 371 DITVIVDYAHTPDGLENLLKALRPQVQGRLICVFGCGGDRDRGKRPQMGRIAATWADRVV 430

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR+EDP++I  +I+ GIPG  +  + +R +AIR AI      D +V+AGKGHE  
Sbjct: 431 VTSDNPRTEDPQQILQDILAGIPGSPWAVEVDRRQAIRLAILEAQPGDTVVIAGKGHEDY 490

Query: 473 HIVTNGEKKMSVD 485
            I+  G +K+  D
Sbjct: 491 QIL--GREKIHFD 501


>gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 506

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 230/463 (49%), Gaps = 40/463 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I  G  FVA+ G    G  +IP A+ +GA+ +V  +  S +D  A       +
Sbjct: 33  VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVAPA--SARDLVAPAVEKRAL 90

Query: 93  LVV-DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            V  DN    L L A   +     ++  + +TGT+GK++ +  ++ +   +G+   ++G 
Sbjct: 91  AVYHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGI---KVGV 147

Query: 150 TSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             T++     F  D  LTTP    + + L  +    V    +E SSH LDQ+R+ G+   
Sbjct: 148 LGTVNYRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYRVAGLDFD 207

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA----- 260
           A   TN+ +DH+DYH   + YF AK RLF   L      +I  +D Y + ++        
Sbjct: 208 AAVLTNVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGIG 267

Query: 261 ----------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                     H  G + +    QG+ + L          Q+  S +GK +    PL G F
Sbjct: 268 YGIGDSSLVTHEVGDKPM---VQGRILSLTG-----QGMQIETSYKGKSWVVESPLIGAF 319

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  + + +G++   +   L+    VPGR E V  N +G  I+VDYAHT ++LE
Sbjct: 320 NAMNLLAAQAVGLQLGLNCKDMCV-LKDFPGVPGRLERV-INDQGLDIFVDYAHTPDALE 377

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +   ++++   R+I VFGCGGDRD+ KRP+M K     AD+A++T DNPRSE PE I  
Sbjct: 378 NVQHTLKSLDFKRLITVFGCGGDRDRAKRPLMAKAVARYADVAVLTSDNPRSEKPEAIMD 437

Query: 431 EIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +   G+      +E  +R  AI  A+  +   DVL++AGKGHE
Sbjct: 438 DARPGLARAAVVLEHPDRQTAITMAVAGMQPGDVLLIAGKGHE 480


>gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 493

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 231/465 (49%), Gaps = 32/465 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E +I+ + ++S+ I  G +F+A  G K DG  +IP+AI  GA AIV         +  +
Sbjct: 19  KEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYIPEAINHGATAIVTDI------YDPS 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
            +  T I +  N  +    F++  Y    +   I+ +TGT+GK++ +  V+ + ++  L 
Sbjct: 73  FKEITQI-ICKNVAEVEGRFSANFYQMPSQELFIVGITGTNGKTTTSFLVKYLLEQLNLP 131

Query: 144 SFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG    I   +      TTP        L  +  QG     +E +SH LDQ R++ I
Sbjct: 132 CGLIGTIEYILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVMEVTSHALDQKRVEHI 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LP-KESPAIIYADDAYSKEVMKR 259
                 +TNL +DH+DYHQ  + Y  AK +LF +L  +P K+S  II   D    E + +
Sbjct: 192 DYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQLDQVPSKKSKQIIANLDCPWFETILK 251

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                     +          + C          + +  +G+ +   FPL G F +YN L
Sbjct: 252 GIKTPIFTFGIDSPADL----RACPTSFGPTGTHIDLHYQGRSYSTFFPLIGRFNIYNCL 307

Query: 317 VAAGLCIAIGIDSALVLEHL----EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            A    IA+G+   + LE L    ++    PGR E +  N     ++VD+AHT ++L   
Sbjct: 308 AA----IAVGLTRKITLEKLISLAQQFPPPPGRLEPI-QNDLDLNLFVDFAHTEDALYKA 362

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +  +  G+II VFGCGGDRD+ KRP M + +   +D+ IVT DNPRSEDP KI  EI
Sbjct: 363 LECLSELKKGKIITVFGCGGDRDKTKRPKMAQASASFSDLTIVTSDNPRSEDPLKIIQEI 422

Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
             G      +I + +R  AI  AIE  N  D+++VAGKGHET  I
Sbjct: 423 AEGFSLQDNYIVQPDRFSAIAFAIEKANPGDIILVAGKGHETTQI 467


>gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   + +    VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 VALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis Z2491]
 gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           Z2491]
 gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240013]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   + +    VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V Y   F     +  I      T S +G    F  P         L G F   N    
Sbjct: 258 LAV-YSYGFSEQADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium sp. P08]
          Length = 529

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 229/466 (49%), Gaps = 40/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A   GA A++             + + 
Sbjct: 46  ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTDE----HGAKLAVEAG 101

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+++VD+ R  +++ A+R++G HP +   +  +TGT+GK++ A  V+   + +G     
Sbjct: 102 VPVVIVDDPRAAMAVAAARIFG-HPSDAMTMFGITGTNGKTTTAFLVEAGLRTAG---HH 157

Query: 147 IGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G   TI      + L       TTP    L    + +  +G + V +E SSH L   R+
Sbjct: 158 VGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVMEVSSHALALQRV 217

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG      +FTNLGRDH+D+H+T   YF AK RLF   L +    +I  DD   +++++R
Sbjct: 218 DGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVG--VINVDDPRGRQLIER 275

Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               G R ++        YQ    H     AI +     ++    +      LPGEF V 
Sbjct: 276 MQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFD-----VNTPSGERTLELSLPGEFNVR 330

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +A  +    G+    V + L    V PGR E V   +      VD+AHT  ++   L
Sbjct: 331 NAAMALAMLETAGLAFDDVADGLCSAQV-PGRMERVDLGADAPTALVDFAHTPQAIASAL 389

Query: 374 KNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R++  SGR+I V G GGDRD  KR  MG++A + ADI ++TDDNPR+EDP  IRA +
Sbjct: 390 DAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTEDPAVIRAAV 449

Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G           ++ G R EAI  A+ M    DV+ V GKGHET
Sbjct: 450 LEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHET 495


>gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae MS11]
 gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
          Length = 492

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 228/478 (47%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+  GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + N +    + A+++Y    +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELIGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDV-QGVKHRFSDLEIVGQAL 488


>gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName:
           Full=UDP-MurNAc-tripeptide synthetase 2
 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 492

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/467 (32%), Positives = 239/467 (51%), Gaps = 38/467 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +S +SR +    +F+ I G   DGH F+ +A+  GA  IV     +L    AT+   
Sbjct: 23  ISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCIVAEREVNLDTNKATL--- 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              ++V +T K ++  A+  Y KHP +   I  VTGT+GK++V + +  +   + LS+  
Sbjct: 80  ---IIVPDTNKAIATLAATFY-KHPSHNLTIYGVTGTNGKTTVTTIINHLLTDNELSTAL 135

Query: 147 IGPTS--------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           IG           + S+    + LT    +Y AK      +QGVTHV++E SSHGL+Q R
Sbjct: 136 IGTNGFQINKDIYSSSNNTTSDVLTNQHMLYEAK------NQGVTHVAMEVSSHGLEQGR 189

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKE 255
           L GI     +FTNL  +H+DYH + + Y   K++LF  L     K+  A++  DD + + 
Sbjct: 190 LWGIDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSSLAIQPNKQKIAVLNRDDNWYEY 249

Query: 256 VMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             KR      +++S G Y+        +    ++    +      F     L GEF VYN
Sbjct: 250 FQKR---TPVQIVSYGIYEQADFRATAIKYYKDRTSFELLTPEGSFQVQTKLMGEFNVYN 306

Query: 315 ALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMI 372
            L A A + +   I    +++ +E     PGR E +   S G R IY+DYAHT ++L   
Sbjct: 307 VLAAIASVYVKESIPLTDLVKSIEGTPTPPGRMEKL--ESSGNRHIYIDYAHTPDALTKA 364

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           + ++      ++IVV G GGDRD+  RP++ K A  +AD  I+T ++PR EDP  I  ++
Sbjct: 365 INSLLPFKQNKLIVVVGTGGDRDKSIRPLLAK-AASVADYVILTINDPRHEDPNNILQDL 423

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +G+    +    NR EAIR AI   +  D++++AGKG E   I+ N
Sbjct: 424 ENGMLHHQYTCLENRKEAIREAINYSSPNDIILIAGKGKEPYQIIKN 470


>gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
 gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
          Length = 518

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 156/495 (31%), Positives = 244/495 (49%), Gaps = 46/495 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ VS D+R + AG +F+A+ G+K DG  FI +     A A +++ A +   F   +  
Sbjct: 30  KVSGVSLDNRTLSAGSVFIAVPGDKVDGRAFIEKC--DSATAAILAEADT---FGVDLTG 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P++ +   ++ +S  A+  YG HP     I+ +TGT+GK++ A  + Q+  +   S  
Sbjct: 85  AVPVVHIPQLKQKISRVAANFYG-HPSRSLTIIGITGTNGKTTCAYLLAQLLSKLQFSCG 143

Query: 146 QIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +G T   + F +        D  LTTPS +   K L+ L  Q V  V++E SSHGL Q 
Sbjct: 144 MVG-TLGFAKFDECGAPVNLTDTGLTTPSALDCQKILAELQQQ-VGAVAMEVSSHGLAQG 201

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKE 255
           R+  +      FTNL RDH+DYH + + Y   K  LF  EEL    S  +I ADDA    
Sbjct: 202 RVADVDFNGAIFTNLSRDHLDYHASLEEYAATKAALFAREEL----SFVVINADDAVGVN 257

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------FDF 302
           ++      G    ++ Y       + + A      V  S+E                 + 
Sbjct: 258 ILTN----GVAPQAITYSYSLGGEQALVAQSENTIVAHSIEWGSSQTVAQLHTPWGAAEL 313

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G + + N L       A+G     V+  ++ L   PGR + V ++ +   ++VDY
Sbjct: 314 ATGLVGRYNLSNVLAVLTTACALGYPLVDVVAQVKTLQAAPGRLQRVNSSEQPLAVFVDY 373

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE +L  +   T G++ VV GCGG+RD GKRP+M ++A  LA+  ++T DNPR 
Sbjct: 374 AHTPDALEKVLSEVAAYTQGKLWVVIGCGGNRDVGKRPLMAEVAERLANCVVLTSDNPRD 433

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E+PE I  +++ G+      +   +R  AI  A+    + D +V+AGKGHE   +V  GE
Sbjct: 434 ENPELILKDMLAGLKNKDAAMVIADRKNAIEYAVANAAENDAIVIAGKGHENYQLV-KGE 492

Query: 480 KKMSVDCDIIREILG 494
           K    D  I +E L 
Sbjct: 493 KLPFDDALIAKEFLA 507


>gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA2]
 gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL044PA1]
 gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA3]
          Length = 499

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 229/466 (49%), Gaps = 40/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A   GA A++             + + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTDE----HGAKLAVEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+++VD+ R  +++ A+R++G HP +   +  +TGT+GK++ A  V+   + +G     
Sbjct: 72  VPVVIVDDPRAAMAVAAARIFG-HPSDAMTMFGITGTNGKTTTAFLVEAGLRTAG---HH 127

Query: 147 IGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G   TI      + L       TTP    L    + +  +G + V +E SSH L   R+
Sbjct: 128 VGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVMEVSSHALALQRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG      +FTNLGRDH+D+H+T   YF AK RLF   L +    +I  DD   +++++R
Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVG--VINVDDPRGRQLIER 245

Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               G R ++        YQ    H     AI +     ++    +      LPGEF V 
Sbjct: 246 MQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFD-----VNTPSGERTLELSLPGEFNVR 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +A  +    G+    V + L    V PGR E V   +      VD+AHT  ++   L
Sbjct: 301 NAAMALAMLETAGLAFDDVADGLCSAQV-PGRMERVDLGADAPTALVDFAHTPQAIASAL 359

Query: 374 KNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R++  SGR+I V G GGDRD  KR  MG++A + ADI ++TDDNPR+EDP  IRA +
Sbjct: 360 DAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTEDPAVIRAAV 419

Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G           ++ G R EAI  A+ M    DV+ V GKGHET
Sbjct: 420 LEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHET 465


>gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI18]
 gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID1]
 gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID24-1]
 gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
          Length = 492

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 229/478 (47%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+  GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + N +    + A+++Y    +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   AII  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AIINVDDEYGAELIGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
 gi|166224776|sp|A4IM04|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
          Length = 489

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 170/500 (34%), Positives = 248/500 (49%), Gaps = 57/500 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINE----VSSDSRHIQAGWIFVAIVGNKEDG 56
           MKLQ L           LS  P  W  R  N     +  DSRH+  G +F  + G   DG
Sbjct: 1   MKLQTL-----------LSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDG 49

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HP 114
           H F  QA+ +GA AIV     S+      +          ++R+ +++ A   YG+  H 
Sbjct: 50  HDFAEQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHR 100

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
            +++ VTGT+GK++    ++Q+ +++G     IG   T I   +     TTP  + L + 
Sbjct: 101 LHLIGVTGTNGKTTTTHIIEQVARKAGKKIGLIGTVGTKIGDRSYPAVNTTPESLVLQRT 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              +  +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  L
Sbjct: 161 FKQMVDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLL 220

Query: 234 FEEL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           F +L     +  P  A++  DD  S+      H     +++ G + K      V A    
Sbjct: 221 FAQLGNRYDERRPKFAVLNHDDPVSQYY---KHMTAAPIITYGIKEK----SDVMA---- 269

Query: 289 QQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +Q+ ++  G  F    P         L G F VYN L A   C+A G   A + E L  +
Sbjct: 270 EQIEMTPGGMAFQLCTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANV 329

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VPGRFE V    +   + VDYAHT +S+E  LK +R      + VV GCGGDRD+ KR
Sbjct: 330 SPVPGRFETV-DEGQNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKR 388

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEM 455
           P+M + A+  AD+A+ T DNPRSEDP +I  ++  G+      ++   +R EAIR AI  
Sbjct: 389 PLMAQAAVRYADVAVFTSDNPRSEDPRQILRDMEAGVSAGDGTYVTIPDREEAIRYAIGQ 448

Query: 456 LNKQDVLVVAGKGHETVHIV 475
             + DV+++AGKGHET  I+
Sbjct: 449 AQEGDVVLIAGKGHETYQII 468


>gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7425]
 gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425]
          Length = 501

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 162/495 (32%), Positives = 252/495 (50%), Gaps = 21/495 (4%)

Query: 1   MKLQDLIYKDFPE--LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL++L+     E  LI  L   P    +R+I  +S++S   Q G +F+ + G + DG  
Sbjct: 1   MKLRELLTAVQSEITLIGDLPCHPA--LDREITSLSTNSWACQPGSLFIGMPGTRVDGGN 58

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F   AI+ GA A +VS+A  L D +        ++ V +  +     A+ LY  +P   L
Sbjct: 59  FWASAISAGAVAALVSAAVPLPDPAEAC-----VIPVQDVSRACGAIAAALY-NYPTQRL 112

Query: 119 AVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKAL 174
            + G +G +   +    ++ +  ++G  +  +G   T     Q+  + TTP  + L   L
Sbjct: 113 KLVGVTGTNGKTTTTHLIEYLLNQTGQPTALLGTLYTRWPGYQETAVHTTPFAVELQGQL 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +     G     +E SSH L Q R+ G     G FTNL +DH+D+H+  + YF+AK  LF
Sbjct: 173 ASAVKAGCPFAVMEVSSHALAQGRVQGCTFQVGVFTNLTQDHLDFHKDLEDYFSAKALLF 232

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                    AII  DD Y + ++++   A     S        + + +  + N  +  + 
Sbjct: 233 SPGY-LSGKAIINQDDPYGQRLIQQLEPAQVWTYSTSDSTADFYTRDLNYLANGVEGILH 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNS 353
               +  F  PL G+F V N L A G  +++G++   +   L +   VPGR + V    S
Sbjct: 292 TPEGEIAFTSPLVGQFNVANLLAAVGAALSLGVNLTTIAAALPQFSGVPGRMQQVQVAPS 351

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +L+  R     R+I VFGCGGDRD+ KRP MG IA  LAD  
Sbjct: 352 QDISVIVDYAHTPDSLENMLRAARPFVKHRMICVFGCGGDRDRTKRPKMGGIAAQLADQV 411

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DNPR+EDP++I  +I+ G+P     I +G+R +AI+TAI      D +++AGKGHE
Sbjct: 412 VVTSDNPRTEDPQRILEDILTGVPDGVNLIVEGDRRKAIQTAILNAQPGDSVLIAGKGHE 471

Query: 471 TVHIVTNGEKKMSVD 485
              I+  G +K+  D
Sbjct: 472 DYQIL--GTEKVHFD 484


>gi|310765087|gb|ADP10037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia sp. Ejp617]
          Length = 495

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 159/488 (32%), Positives = 239/488 (48%), Gaps = 30/488 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +  +FVAI G+  DG  FIPQAIAQG  A++  +    +D     
Sbjct: 19  ERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIVE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y + P   L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLAQLSQRLSALAGRFY-QQPGEKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G T  +     +           TT S + +   L+ L  +G +  ++E SSHGL QHR
Sbjct: 134 LGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLAAMEISSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A +FTNL RDH+DYH     Y  AK  LF E   +   AII ADD   +  ++
Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINADDEVGRRWLE 251

Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A        L  G  G+++   KV       +V  S    + D    L G F V N
Sbjct: 252 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDIDSRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +++      +     +L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSEDP  I  +I+ 
Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAIVRDILS 430

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           G+   ++ G       R +A+   +    + D+++VAGKGHE   I+ +     S D D 
Sbjct: 431 GL---LDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-DRDT 486

Query: 489 IREILGLI 496
           +  +LG++
Sbjct: 487 VARLLGVL 494


>gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 499

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/467 (31%), Positives = 230/467 (49%), Gaps = 32/467 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 29  EITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 84  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLIEKILSDYGY 138

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 139 HTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L    S      A++ ADD  S E 
Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 257

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +       +  +S    + +    L G F VYNA
Sbjct: 258 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 316 LAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G+II VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I  G
Sbjct: 375 ISEFAKGKIITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKG 434

Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                    ++E     AI  AI M +  D++++AGKGHET  I+ +
Sbjct: 435 FSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKD 481


>gi|326572875|gb|EGE22860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis CO72]
          Length = 520

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 237/463 (51%), Gaps = 28/463 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA-----IAQGAEAIVVSSAYSLQDFS 83
           + ++   DSR I A   FV +  + +D    +  A       + + A V+S         
Sbjct: 40  QFDQFCLDSRKIGADDGFVLLKSSSQDAQTSLNNANRYLMSVKDSAAFVISELDLAGLDL 99

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQR 139
             I+   PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+CQ 
Sbjct: 100 DDIQ--IPIISVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQA 157

Query: 140 SGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           SG+SS  +G      +    Q    TT   +     +  ++ +GV  +++EASSHGLDQ+
Sbjct: 158 SGISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQY 216

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256
           RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD   +  
Sbjct: 217 RLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPA 273

Query: 257 MKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +     A  R++    Q      + K V    +  ++ +     +   + PL G F V N
Sbjct: 274 LFDYEAADFRIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDN 333

Query: 315 ALVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            L +     A+    A  L +L  +L    GR +    +S+ G   +DYAHT ++L+ +L
Sbjct: 334 LLASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDALKQVL 391

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++ 
Sbjct: 392 SSLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQ 451

Query: 434 HGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            G+        I + +R  AI  A++   K D++V+AGKGHET
Sbjct: 452 KGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494


>gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
 gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
          Length = 497

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 237/470 (50%), Gaps = 23/470 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  +S++S   +   IF+ + G + DG  F   AI  GA A+V+S   +++     I 
Sbjct: 25  EEVKGISTNSHSCKQEEIFIGMPGTRVDGGEFWQSAIKAGAVAVVISPQAAIK---FPIN 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS------VASFVQQICQRSG 141
               +++V++     S  A+  Y    E+I  +  T           +  F+ +  + + 
Sbjct: 82  DLHCVIIVEDVILTASEIATAFYSYPSEDIKMIGVTGTNGKTTTTHLIEYFLTECKKNTA 141

Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L    IG   S  + F Q +  TTP    L   LS        +  +E SSH L Q R+ 
Sbjct: 142 L----IGTLYSRWNGFKQTSIHTTPFSPELQAQLSQAVIDKNEYCVIEVSSHALVQGRVK 197

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKR 259
           G       FTNL +DH+D+H+  + YF AK  LF  E L  +  A++  DD+Y + +++ 
Sbjct: 198 GCGFNVSIFTNLTQDHLDFHKNLENYFLAKQLLFSPEYL--QGKAVVNIDDSYGERLIQY 255

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                    S+       H   +   H++ +  +   G +F+F  PL G+F + N L A 
Sbjct: 256 LGPQKVYSYSIENTMADFHTTNLNYKHDRIEGILKTPGGNFEFQSPLVGKFNLSNLLAAI 315

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRT 378
                + ID   V+  L +   VPGR E +  +  +   + VDYAHT +SLE +LK  R 
Sbjct: 316 ATLFHLNIDLETVINKLPQFPGVPGRVEKIEVSEVQDISVIVDYAHTPDSLENLLKATRP 375

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
             SG++I VFGCGGDRD+ KR IMGKI   LADI+++T DNPR+E+PE+I ++I+ G+P 
Sbjct: 376 FISGKVICVFGCGGDRDRSKRSIMGKICAKLADISVLTSDNPRTEEPEQILSDILEGVPK 435

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              F    NR EAI+TAI   +  D +++ GKGHE   I+  G +K+  D
Sbjct: 436 NANFWVISNRTEAIKTAILKADPGDGVLIVGKGHENYQIL--GTEKIYFD 483


>gi|290476458|ref|YP_003469363.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
 gi|289175796|emb|CBJ82599.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
          Length = 495

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 164/488 (33%), Positives = 237/488 (48%), Gaps = 30/488 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  + E++ DSR   AG +FVA+ G++ DG  +IPQAIAQG  A++  +     + +   
Sbjct: 19  ELPLREMTLDSRKAAAGDLFVAVKGHQTDGRNYIPQAIAQGVAAVIAEAKGKTDNGTIQA 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +D+    LS  A   Y +HP N L + G +G +   +  Q + Q S      
Sbjct: 79  MHGVPVIYLDDLNNKLSKLAGEFY-QHPGNKLKLVGVTGTNGKTTTTQLLAQWSQ----G 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G  S +     +  L        TT S + +   L  L +Q  T  ++E SSHGL Q R
Sbjct: 134 LGEISAVMGTVGNGLLGMIVPSENTTGSAVDIQLDLQQLVNQKATFAAMEVSSHGLVQGR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH   + Y  AK  LF     K+   II ADD   ++ + 
Sbjct: 194 VAALPFQAAVFTNLSRDHLDYHGDMENYEEAKWLLFSSHDVKQK--IINADDDVGQKWLT 251

Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           R            L   + G+++    +        +T +          PL G F V N
Sbjct: 252 RLPETVAVTMENRLPKNWSGRWLSTSDIHYHDKGASITFTSSWGQGTLNSPLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A    +++      +LE    L  V GR E      R   + VDYAHT ++LE  L 
Sbjct: 312 LLLALATLLSLEYPLQKLLEAASCLEPVCGRMEVFAARDRP-TVVVDYAHTPDALEKALS 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    G++  VFGCGGDRD+GKR +MG IA   AD  IVTDDNPRSE+P  I  +I  
Sbjct: 371 AARLHCKGQLWCVFGCGGDRDKGKRSLMGGIAEQGADRVIVTDDNPRSEEPHSIVEDI-- 428

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            + GFI+ G       R+EA+ +AI    ++DV++VAGKGHE   +V N     S    +
Sbjct: 429 -LTGFIDPGRAMAIHGRVEAVTSAIMQAAEEDVVLVAGKGHEDYQLVGNRRLDYSDRLTV 487

Query: 489 IREILGLI 496
            R +LG+I
Sbjct: 488 AR-LLGVI 494


>gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 495

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 237/459 (51%), Gaps = 40/459 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +IN +  ++ + Q G +F+A+ G    G   I +AI +G  A++V S     D    I  
Sbjct: 51  EINGLCLNTHNAQTGDLFIALQGETTHGINHIERAIEKGCVAVLVDS----HDLECAI-- 104

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             P++ ++N +++L   AS  Y +  +  ++ VTGT+GK+SV  F+ Q+    G+ +  I
Sbjct: 105 --PVIRIENLKQYLPALASAYYSQATKVEVIGVTGTNGKTSVGYFISQMLSELGIKNGFI 162

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G T  IS+    +  TTP    L KAL       +    +E SSHGLDQ+R+ G+     
Sbjct: 163 G-TLGISNSDVASANTTPDIFTLYKALHQYHLDNINTAVLEVSSHGLDQNRVAGLNFKQA 221

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL +DH+DYHQT   Y   K++LF          II  DDAY ++ +  +       
Sbjct: 222 IFTNLTQDHLDYHQTLDEYRQVKLKLFS--FDSIQSVIINQDDAYHQDFLDAS------- 272

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALVAAGLC 322
                +GK    +   +I + +++TI+ +G      +F F  PL G+F + N L A    
Sbjct: 273 -----KGK---KQTTYSIKDFEKITINEQGFLCQLDNFVFEIPLLGKFNLSNVLAAFNSV 324

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381
             +G     ++  L +L    GR + +    +    +VDYAHT ++L   +  ++     
Sbjct: 325 EQLGFSREGIIPLLSRLFPPLGRMQKI----KKALAWVDYAHTPDALANAITTLKEHHPE 380

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            +I +VFGCGG+RD+ KR  MGKIA  LAD  ++T+DNPR EDP+ I  +I+ GI    E
Sbjct: 381 HKIRIVFGCGGNRDKSKRAKMGKIASKLADTIVLTNDNPRKEDPQAIINDILSGIDDSFE 440

Query: 442 KG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                +R  AI TAI  LN+ + L++AGKGHE+     N
Sbjct: 441 LDITLDRQLAIETAITTLNEGECLLIAGKGHESTQEFKN 479


>gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
 gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
          Length = 499

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/470 (31%), Positives = 234/470 (49%), Gaps = 38/470 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 29  EITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEGAVKNGAVALIVERDVNIE----- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 84  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     ++S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 139 HTGLMGNNGVKVNSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L       ++  A++ ADD  S E 
Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFHEYKHVKGLLFARLGNDLSTTEKKIAVLNADDP-SVEY 257

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G   +  +  K +       +  +S    + +    L G F VYNA
Sbjct: 258 FKKITSA--EVITYGIHNRADVQAKNINLSPKGIRFLVSSFNGEIEISLNLVGRFNVYNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + I  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 316 LAAITVAIVEGIPLTNICDSLSNLKCIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I   
Sbjct: 375 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 431

Query: 436 IPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             GF++  N        R  AI  AI M +  D++++AGKGHET  I+ +
Sbjct: 432 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKD 481


>gi|327392719|dbj|BAK10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           MurE [Pantoea ananatis AJ13355]
          Length = 471

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 157/457 (34%), Positives = 225/457 (49%), Gaps = 23/457 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVAI G++ DG  FIPQAIAQG  A++  +     D         P++ +
Sbjct: 4   DSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y + P     + G +G +   +  Q + Q + L    +G TS +  
Sbjct: 64  AQLHQRLSALAGRFY-QQPGEKQKLIGVTGTNGKTTTTQLLAQWASL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  +        TT S + +   L  L  +G +  ++E SSHGL QHR+  +   A 
Sbjct: 119 TVGNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRVAALPFSAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   Q Y +AK  LF E   +   AII ADD   +  +    +A    
Sbjct: 179 VFTNLSRDHLDYHGDMQQYESAKWLLFSE--HQVGVAIINADDEVGRRWLANLPDAVAVT 236

Query: 268 ----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L  G  G+++    V    N   +       + +    L G F V N L+A    +
Sbjct: 237 MENNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNLLLALATLL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G     +L    +L  V GR E      +   + VDYAHT ++LE  L+  R    G+
Sbjct: 297 ALGYALDDLLRAAARLQPVNGRMEVFSATGKP-TVVVDYAHTPDALEKALEAARLHCKGK 355

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441
           +  +FGCGGDRD+GKRP+MG IA   ADI +VTDDNPRSEDP+ I  +I+ G+  PG   
Sbjct: 356 LWCLFGCGGDRDKGKRPLMGAIAEQFADIVVVTDDNPRSEDPQAIVQDILSGLLDPGRAR 415

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
               R +A+ + I      D+++VAGKGHE   I+ N
Sbjct: 416 VVAGRAQAVTSTIMQAQPDDIVLVAGKGHEDYQIIGN 452


>gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 506

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 162/503 (32%), Positives = 246/503 (48%), Gaps = 34/503 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I +  P ++ +L + P         E+ +DSR    G +FVA  G+  DG  FIPQA+AQ
Sbjct: 18  IRESVPHILERLGLAP--------GELVNDSRRAAPGKVFVAYPGDARDGRDFIPQAVAQ 69

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA+ ++  + +   D +  I    P   V   +  +   A+ +YG+     +++ VTGT+
Sbjct: 70  GADGVLWEADHYQWDPALAI----PNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTN 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIG------PTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
           GK+SVA ++ Q     G  +  IG      P++  +  A    L TTP  I L + L+  
Sbjct: 126 GKTSVAHWIAQALSALGRKTAIIGTVGNGFPSTGDTPAALTPALNTTPDAIELQQRLARY 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G    ++E SSHGL Q R++G +      TNL RDH+DYH    +Y  AK RLF   
Sbjct: 186 RGEGAVACAMEVSSHGLAQGRVNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKARLFN-- 243

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    A++  DDA+ + +      A  RV   G+Q   +  + +        + +  + 
Sbjct: 244 WPDLEWAVLNVDDAFGQRLEGETRPA--RVAGYGFQRGAVVARGLQLSQAGMHLALQTDW 301

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +   PL G F   N L A    +   +        L ++    GR + +G  +    
Sbjct: 302 GDAEIDAPLLGRFNAANLLAALTALLVSDVKLDDACRALAQVTPPAGRMQTLGGEAHP-L 360

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDY+HT ++LE +L  +R I  G R+I VFGCGG+RD+GKRP+MG  A   AD   VT
Sbjct: 361 VVVDYSHTPDALEKVLATLREIAGGGRLICVFGCGGNRDKGKRPLMGAAAGRGADEIWVT 420

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRT-----AIEMLNKQDVLVVAGKGHE 470
            DNPR EDP  I  +I  G+     +G  R+EA R      A+   +  DV+++AGKGHE
Sbjct: 421 SDNPRHEDPRAIIDDIRAGLAEAEAEGRVRVEAERARAIFEAVGGAHHGDVVLIAGKGHE 480

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V  GE+    D  + R+ L
Sbjct: 481 DYQEVA-GERLPFSDIAMARKAL 502


>gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured
           Prochlorococcus marinus clone HF10-88F10]
          Length = 511

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/492 (29%), Positives = 247/492 (50%), Gaps = 37/492 (7%)

Query: 13  ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L++ + I P +   + +IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAEA 
Sbjct: 8   KLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAA 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           ++ SA   ++  A+I     +++ DN         +  + +    I  + VTGT+GK+++
Sbjct: 68  IIGSA--AKERIASIDRERILVIEDNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGKTTI 125

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ + ++ G  +   G   +    F++    TT     L K L+           +E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFAILE 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246
            SSH + Q R+ G +  A  FTN  +DH+DYH   ++YF  K +LF    L  K+   ++
Sbjct: 186 VSSHSIAQKRISGCEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGICVL 245

Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTI 293
             DD +    S ++ KR+     ++    ++          KF      C  H  ++   
Sbjct: 246 NHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE--- 302

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352
                      PL GEF + NA+ A  +   +      + + ++     PGR E +  + 
Sbjct: 303 -----KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDD 357

Query: 353 ---SRG-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              SR    I VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +
Sbjct: 358 NDVSRSLPTIIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEE 417

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           L+D   +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++A
Sbjct: 418 LSDQLFITSDNPRSEEPQKIVNDILMGIKKRENITIEIDRFKAINESIKFANKKDIVLIA 477

Query: 466 GKGHETVHIVTN 477
           GKGHE   I+ +
Sbjct: 478 GKGHEDYQILND 489


>gi|330012012|ref|ZP_08307229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
 gi|328534001|gb|EGF60653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
          Length = 471

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 235/463 (50%), Gaps = 35/463 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D         P++ +
Sbjct: 4   DSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P   L + G +G +   +  Q + Q + L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   LS L  QG T  ++E SSHGL QHR+  ++  A 
Sbjct: 119 TVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +    +    G++  LK     ++    TI   S  GK  +    L G F V N L+A  
Sbjct: 237 MEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGKG-EIESRLMGAFNVSNLLLALA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A+G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R   
Sbjct: 294 TLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKALQAARLHC 352

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   + G +
Sbjct: 353 SGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGML 409

Query: 441 EKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + G       R EA+  A+    + DV++VAGKGHE   IV N
Sbjct: 410 DAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 452


>gi|322615944|gb|EFY12861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620728|gb|EFY17588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623920|gb|EFY20757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627368|gb|EFY24159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630675|gb|EFY27439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638105|gb|EFY34806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322676402|gb|EFY72473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|323216558|gb|EGA01284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219907|gb|EGA04385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225813|gb|EGA10033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228645|gb|EGA12774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236741|gb|EGA20817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239758|gb|EGA23805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242194|gb|EGA26223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249382|gb|EGA33298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252285|gb|EGA36136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256625|gb|EGA40355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262994|gb|EGA46544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265479|gb|EGA48975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271733|gb|EGA55151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 471

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 235/462 (50%), Gaps = 37/462 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYL 63

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
               + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S  +G     
Sbjct: 64  SQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNG 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  FTNL
Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNL 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   +    ++V  
Sbjct: 184 SRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASLPDAVAVSM 237

Query: 273 QGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQVYNALVAA 319
           +G   H+   C  H +     +VE    G    F            L G F V N L+A 
Sbjct: 238 EG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLAL 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R  
Sbjct: 293 ATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLH 351

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   + G 
Sbjct: 352 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 408

Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           ++ G       R EA+   I      DV+++AGKGHE   IV
Sbjct: 409 LDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKGHEDYQIV 450


>gi|318040403|ref|ZP_07972359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0101]
          Length = 506

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 158/483 (32%), Positives = 241/483 (49%), Gaps = 42/483 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR +  G +FV + G + DG +F PQAI  GA   V+  A +    +      
Sbjct: 25  VTSVSCDSRRVGPGTVFVGLPGAQVDGGVFWPQAIEAGAVLAVIGRAAA---EACPPADQ 81

Query: 90  TPILVV-DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+LVV D   ++  + A+  + +  +  +++ VTGT+GK++    ++ +    G  S  
Sbjct: 82  DPVLVVTDPVARWAGMLAAEFWQQPSQRLHLIGVTGTNGKTTTTHLIEHLAASCGTPSAL 141

Query: 147 IG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            G      P  ++++     + TT     L   L+  +  G    ++E SSH LDQ R+ 
Sbjct: 142 FGTLVNRWPGHSVTA-----QHTTAFADVLQGQLAQAAEAGAQVGAMEVSSHALDQQRVS 196

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEV 256
           G +     FTNL +DH+DYH + QAYF AK  LF     E+   ++ A++  DD + +++
Sbjct: 197 GCRFAGAVFTNLTQDHLDYHPSMQAYFEAKASLFSAAFLEMHEGQATAVVNVDDPWGQQL 256

Query: 257 MKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +R      R  L    + +    +   +    + V +S  G    F  PL G F + N 
Sbjct: 257 AERLGGHAWRCSLEESSEAELRMEQLQFSSEGVKGVLVSPHGSG-PFQSPLLGRFNLMNQ 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----------IYVDYAHT 365
           L A G  +  G+  A +L+ L     VPGR E VG     GR          + VDYAHT
Sbjct: 316 LQAVGALLQQGLPLANLLQGLASFRGVPGRMERVGV----GRAECCEGSLPAVLVDYAHT 371

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE  LK  R    G++I VFGCGGDRD+ KRP+MG IA  LAD  +VT DNPR+EDP
Sbjct: 372 PDGLESALKACRPFAQGQLICVFGCGGDRDRTKRPLMGSIAARLADQVVVTSDNPRTEDP 431

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           ++I  +++ GIP       + +R  AI   +      D++++AGKGHE   I+  G  K+
Sbjct: 432 QQILQDVMQGIPEGTAVQVEADRGRAIAAVVAAAQPADLVLIAGKGHEDYQIL--GTTKI 489

Query: 483 SVD 485
             D
Sbjct: 490 HFD 492


>gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-92-679]
 gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 492

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA      DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACQVEYTDGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 492

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 160/488 (32%), Positives = 232/488 (47%), Gaps = 34/488 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   DFP L+   +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETDFPPLLCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQD----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            A+A GA       A+   D    F+       P   + + +    + A+++YG   +  
Sbjct: 55  AAVANGA-------AFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGL 107

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
            +  VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L
Sbjct: 108 KVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF
Sbjct: 168 YRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYDAIKSRLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GY---QGKFIHLKKVCAIHNKQQ 290
                    A+I  DD Y  E++ R     C  L+V GY   +   I +    A  +   
Sbjct: 228 --YWQDLQHAVINIDDEYGAELVCRLKK-DCPDLAVYGYGFSERADIRITDFTASSDGIA 284

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   +      L G F   N      L  A G     VL+ LEK+    GR + + 
Sbjct: 285 AVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLEKIRPASGRMDCI- 343

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            NS    + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+ 
Sbjct: 344 MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQ 403

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGK 467
            AD  +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+      D++++AGK
Sbjct: 404 GADKVVVTSDNPRLENPQDIINDILPAVPNPERVEADRAAAIRYAVGRAAVNDIILIAGK 463

Query: 468 GHETVHIV 475
           GHE    V
Sbjct: 464 GHENYQDV 471


>gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
 gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
          Length = 500

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 230/465 (49%), Gaps = 32/465 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I +G +F+ + G     ED H F+  A+  GA A++V    ++Q     
Sbjct: 29  EITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIQ----- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 84  ----IPKIIVKDARYAMAIIASHFYG-YPSNKIKLIGITGTNGKTTTSYLLEKILTDHGF 138

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     +        + T  P  L + L  + +    +  +E +S GL   R+ G
Sbjct: 139 QTGLMGNNGVKVGPKWYPTDINTQEPPILQRNLQMMKNHNTDYCVMEVTSQGLHMERVKG 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
                  FTNL +DH+DYH T + Y   K  LF  L        +  AI+ ADD  S E 
Sbjct: 199 CNFKTAVFTNLTQDHLDYHGTFEEYKQVKGLLFSRLGNDFSTTDKKIAILNADDP-SVEY 257

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +       Q  +S    + +    L G F VYNA
Sbjct: 258 FKKVTSA--EVITYGIHNGADVQAKNITLSPKGIQFLVSTFNGEKEINLNLVGRFNVYNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +   I    + + L  +  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 316 LAAITVALVEDIPLTNISDSLSHVKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   + G+II VFGCGGDRD  KR IMG+IA   +D   +T DNPRSEDP+ I  +I  G
Sbjct: 375 ISEFSKGKIITVFGCGGDRDTKKRSIMGEIAGSYSDFVYITSDNPRSEDPQAIMKDIEKG 434

Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +        ++E     AI  AI M +  D++++AGKGHET  I+
Sbjct: 435 LSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 479


>gi|126658487|ref|ZP_01729635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
 gi|126620229|gb|EAZ90950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
          Length = 490

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 232/470 (49%), Gaps = 21/470 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER +  +S++S   Q G IF+ + G + DG  F   A+  GA A ++S   + + F    
Sbjct: 17  ERDVKGISTNSHACQTGDIFIGMPGTRVDGGEFWQSAMEVGATAAIISPQ-AAEKFPPN- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +  +++VD+     +  A+  YG HP   L + G +G +   +    I    G S   
Sbjct: 75  -DDQCVIIVDDLITVAAEIAAAFYG-HPAQQLKMIGVTGTNGKTTTTHLIEYFLGQSQ-- 130

Query: 147 IGPTSTISS-------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             PT+ I +       F Q    TTP    L + L+   +    +  +E SSH L Q R+
Sbjct: 131 -KPTALIGTLYTRWPGFEQTAIHTTPFAPELQEQLAQAVAANNEYCVMEVSSHALAQGRV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                    FTNL +DH+D+H+  + YF+AK  LF     +E  AII  DD Y K +++ 
Sbjct: 190 KQCPFKVSVFTNLTQDHLDFHKDMEDYFSAKQLLFTPDYLQEK-AIINLDDPYGKRLIES 248

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                    SV       +   +    N    T+       +F  PL G+F + N L A 
Sbjct: 249 FKPEQVWSYSVSNAEADFYTSDLTYRGNGVTGTLYTPLGSVEFSSPLVGQFNLSNVLAAV 308

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRT 378
              +  G+D    +E L     VPGR E V  N +    + VDYAHT +SLE  LK  R 
Sbjct: 309 SAVLHFGLDLTETIESLPHFLGVPGRMERVQINEKQDISVIVDYAHTPDSLENSLKAARP 368

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G++I VFGCGGDRD+ KRP+MG+ +  LAD+++VT DNPR+EDP++I  +I+ GI  
Sbjct: 369 FVKGKLICVFGCGGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDILTGISQ 428

Query: 439 FIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +E     +R EAI+TAI      D +++AGKGHE   I+  G +K+  D
Sbjct: 429 SVEPLVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQIL--GTEKIHFD 476


>gi|299768539|ref|YP_003730565.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
 gi|298698627|gb|ADI89192.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
          Length = 499

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 244/478 (51%), Gaps = 61/478 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           QW ++  +  S DSR +Q+G IF+A+      E    F   A+A GA AI+  +   + +
Sbjct: 16  QWSQQPFHGFSLDSRKVQSGQIFIALTSYSQPEKTRAFAESALANGALAIISETELGVAN 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFV--- 133
                       V  + R+ +  +  R Y +H     P  I+AVTGT+GK++++  V   
Sbjct: 76  E----------WVCPDVRQRMGEWQER-YLQHIDPVTPARIVAVTGTNGKTTISRLVAEL 124

Query: 134 ----QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EA
Sbjct: 125 ISSQQQRCAVMGTTGNGILPDLTPSTH------TTLDALQLQNALHDYAKQGATFASLEA 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF         A+I  D
Sbjct: 179 SSHGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FNSLKVAVINLD 236

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----- 304
           D ++  ++  A     +   + Y      L +  A +    ++ S+ G  F+ +      
Sbjct: 237 DEHAALMINAAKQNPAQPKILTYS-----LTQNTADYYISDLSYSLAGATFNLVSSQGSF 291

Query: 305 ----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G F V N + A       G D   ++  + KL   PGR + +     G R++V
Sbjct: 292 AVQSPLLGHFNVENLIAALIAAEQAGFDLDALVAFVPKLIGAPGRMQVI---RDGERLFV 348

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DN
Sbjct: 349 VDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNKQ----DVLVVAGKGHE 470
           PR+EDPE+I A++  GI  F   G+R++ I   R AI+ + +Q    D++V+AGKGHE
Sbjct: 409 PRTEDPEQIFADMKQGI-NF--SGHRMQEIHDRREAIKFVAQQAQAGDIVVIAGKGHE 463


>gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
 gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
          Length = 492

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 153/464 (32%), Positives = 237/464 (51%), Gaps = 20/464 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-RS 88
            N +S DSR I AG +F+A+ G+  DG  FI  A  QGA A +V S    +     + ++
Sbjct: 19  FNNISLDSRAITAGDLFIAVPGHLVDGRKFIGVAFEQGAVAALVHSDDPAEHGRLKLEQT 78

Query: 89  NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +P ++     + LS   ++ Y  G H   ++ VTGT+GK+S+   + Q+    G  +  
Sbjct: 79  GSPQVLFFQLSQHLSAIGAQAYPLGAHRLKLIGVTGTNGKTSITQLMAQLVALLGKQASL 138

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +     D+  TT  PI ++  L   +  G    ++E SSHGL Q R++ +   
Sbjct: 139 MGTLGNGLWGDLVDSGNTTADPITISAQLQAFNLAGADLCAMEVSSHGLIQGRVEAVPFD 198

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH T QAY +AK RLF+         +I  DD   ++ +    +A  
Sbjct: 199 VAVFTNLSRDHLDYHGTMQAYGDAKKRLFK--FTSLQSGLINLDDEVGRQWLSEEQSA-- 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ---VTISV---EGKDFDFLFPLPGEFQVYNALVAA 319
           + +       +     +  + N Q    VT ++   EG+      PL G F + N + A 
Sbjct: 255 KHIGFSICSAYADAASIYTLDNHQHDQGVTATLVWPEGQ-AKLASPLLGYFNLSNLVAAL 313

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G    IG D   +   + +L  V GR E   T++ G  + VDYAHT +++E  LK +R  
Sbjct: 314 GALYLIGYDMRAMAASVPQLKSVAGRMERFTTDN-GVTLVVDYAHTPDAIEQALKALRGH 372

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             G++  +FGCGGDRD+GKRP+M + A   AD  +VT DN RSE PE I  EI+ G+   
Sbjct: 373 CEGQLWCLFGCGGDRDKGKRPLMAQAAEAYADKVMVTSDNARSESPEVIIEEILAGLDAP 432

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
              + + +R +AIR  + +    D++++AGKGHET   +  GE+
Sbjct: 433 ERVLTQVSREKAIRQVVALAKPGDLILLAGKGHETYQEIA-GER 475


>gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 496

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 170/513 (33%), Positives = 250/513 (48%), Gaps = 65/513 (12%)

Query: 14  LINQLSIFPMQWRERKINEVSS-----DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           L+ +L+ + M  + R   E S      DSR +Q G +F+ + G+  DGH +  QA  QGA
Sbjct: 2   LLKKLATYFMTSQIRGDGETSCTGIAIDSRKVQPGDLFICLPGHTVDGHDYARQAEEQGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A+VV     L D +       P L V ++R+ +++     +G  P + L V G +G + 
Sbjct: 62  AALVVERW--LDDVA------LPQLKVKDSRQAMAVLGGVFFGA-PSSRLKVIGVTGTNG 112

Query: 129 VAS---FVQQICQRSGLSSFQIGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGV 182
             +    +++I Q  G  +  IG       FA        TTP  + L + L  ++  G 
Sbjct: 113 KTTTTYLIERILQDQGRETGLIGTIQ--RRFAGQTYPMSGTTPESLELQQYLHDMAEGGG 170

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----- 237
            +  +E SSH L Q R+ G +     FTNL +DH+DYH+T   Y  AK   F  L     
Sbjct: 171 EYCVMEVSSHALAQGRVKGTRFRTAVFTNLTQDHLDYHKTMDEYRWAKGLFFSRLGNTYA 230

Query: 238 -LPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             P+E S A++  DD  S    K+       V++ G +          A      ++I+ 
Sbjct: 231 ENPEERSYAVLNVDDPASAYFAKQT---AAEVITYGVEQD--------ADVRASNISITA 279

Query: 296 EGKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            G  F         D    + G+F VYNAL A    +  GI    +   LE +  V GR 
Sbjct: 280 RGTSFHVDTFRGSADISLRMVGKFNVYNALAAISATLLEGIPLEQIKASLESVKGVEGRV 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V    +   + VDYAHT + LE +L+ +     GR+I VFGCGGDRD+ KRPIMG+IA
Sbjct: 340 EAV-DEGQDFAVIVDYAHTPDGLENVLRTVNEFAKGRVICVFGCGGDRDRKKRPIMGQIA 398

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEML 456
              AD  +VT DNPR+EDP+ I  +I  G+   +E G          +R EAI  AIEM 
Sbjct: 399 AKYADYVLVTSDNPRTEDPQAILRDIEQGL---VEDGVDQARYELIVDRREAIGKAIEMA 455

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +++DV+++AGKGHET  ++  G K +  D  I+
Sbjct: 456 SREDVVLIAGKGHETYQLI--GSKVLDFDDRIV 486


>gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum SS9]
 gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Photobacterium profundum SS9]
          Length = 506

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 162/494 (32%), Positives = 253/494 (51%), Gaps = 25/494 (5%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S +  +WRE  +  ++ DSR I+A  +FVA+ G+  DG  FIP AI  GA A++  +   
Sbjct: 21  SDWQEKWREHSVVNMTIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNI 80

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQ 135
            +      +    I+      ++LS  A+R Y + P+    +LAVTGT+GK++++  + Q
Sbjct: 81  AKHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQ-PDTRLKLLAVTGTNGKTTISQLLAQ 139

Query: 136 ICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                G ++  +G T    ++S       TT + I +   L  L  QG    ++E SSHG
Sbjct: 140 WANLIGYNAGVMGTTGNGLLNSLTPAVN-TTGNAIEIPHVLHDLVDQGADFAAMEISSHG 198

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L Q R+  ++ +A  FTNL RDH+DYH     Y +AK  LF E   +    +I ADD   
Sbjct: 199 LVQGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTE--HQAGIPVINADDDIG 256

Query: 254 KEVMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPL 306
              +    +A   V     L   YQG+ + L  V  +++ Q V IS +       F  PL
Sbjct: 257 FTWLADLPHAVAVVTDKARLGEHYQGQALWLTDV--MYSTQGVNISFDSSWGAGQFTAPL 314

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N L+A    +A+G     ++     L  V GR E   +  +   + VDYAHT 
Sbjct: 315 VGSFNVSNLLLALATLLALGHSIDKLIATAPHLTAVIGRMEVFQSPDKP-MVVVDYAHTP 373

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +I+  LAD  I+TDDNPR+E P 
Sbjct: 374 DALEKALQALRVHCQGKLWCIFGCGGDRDTGKRPMMAEISERLADRIIITDDNPRTEAPA 433

Query: 427 KIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I ++++ G+    ++     +R  A   AIE     D++++AGKGHE   ++ +     
Sbjct: 434 AIVSDMLQGL-ALPQQAQVIHDRKLACTYAIEHAQVNDIILLAGKGHEDYQVLADRTIHY 492

Query: 483 SVDCDIIREILGLI 496
           S D + ++ + G I
Sbjct: 493 S-DRETVQALFGEI 505


>gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36]
 gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36]
          Length = 503

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 159/497 (31%), Positives = 245/497 (49%), Gaps = 24/497 (4%)

Query: 13  ELINQLSIFPMQ-WR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           E+ +   +  +Q W    E  +N +  DSR +QAG  FVAI G+  DG  FI +A+  GA
Sbjct: 11  EMNSSCRVLSLQAWNIDLELVVNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGA 70

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A++  +    +          PI+      + LS  A   Y    + +  + VTGT+GK
Sbjct: 71  TAVLKDADNEAEHGHIDYIDQRPIISFFGLNQALSALADNFYQSPSQQLKLIGVTGTNGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRL--TTPSPIYLAKALSYLSSQGV 182
           S++    Q I     L + + G   TI +  FAQ  +   TT S + +   ++    QG 
Sbjct: 131 STI---TQIIANWVTLLAGKAGVMGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGA 187

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              ++E SSHGL Q R++ +      FTNL RDH+DYH    AY +AK  LF+  +  + 
Sbjct: 188 ELCAMEVSSHGLIQGRVNALDFDVALFTNLTRDHLDYHGDMDAYADAKKILFQGAVKHK- 246

Query: 243 PAIIYADDAYSKEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             I+  DDAY K   ++  +A     R     + G F++  ++          +     D
Sbjct: 247 --ILNVDDAYGKMWAQQWSDAIQFSVRQDLSAHHGAFLYCNELSFDTGGFSCELKTSWGD 304

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L GEF   N + A    +A+G D   +L    KL  V GR E      +   + 
Sbjct: 305 GTLQCSLIGEFNASNVVAACASLLALGYDLDDLLRVAPKLTAVCGRMELFKQAGQAACV- 363

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L+ +R    G++  ++GCGGDRD GKRP+M ++A   AD+A++TDDN
Sbjct: 364 VDYAHTPDALEKALQALRVHCEGKLWCIYGCGGDRDTGKRPLMAQVAEQFADMAVITDDN 423

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR+E    I  ++++G+  P       +R  AI+ A+E  +  D+++VAGKGHE   I+ 
Sbjct: 424 PRTESAAAIVTDMLNGLAKPDAAHVIHDRRRAIQWAMEQSSADDIILVAGKGHEDYQII- 482

Query: 477 NGEKKMSVDCDIIREIL 493
             EK    D + I E+L
Sbjct: 483 GVEKHHYSDRETITEML 499


>gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
 gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
          Length = 532

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 227/451 (50%), Gaps = 19/451 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR I+ G ++ A+ G    G  F+  A A GA A++   A   +  +A +   
Sbjct: 67  VTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAVAVLTDPAGVERALTAGL--- 123

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LVV + R  L   A+ +YG+  +++  L +TGT+GK++ +  +  + +R G ++   
Sbjct: 124 -PLLVVPDPRAVLGDVAATVYGEPTKDLQLLGITGTNGKTTTSFLLDAVLRRLGPAALVG 182

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              + I      + +TTP    L    + +  QGV   ++E SSH L + R+DG +    
Sbjct: 183 TIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVSSHALAKGRVDGARYSVA 242

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCR 266
            FTNL +DH+D+H+T + YF AK  LF    P+    A++  DD Y + +  +       
Sbjct: 243 GFTNLSQDHLDFHKTFEQYFAAKASLFT---PERCDLAVVNIDDKYGRRLAAQT-VVPLV 298

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +S      +       + H    + I   G+       LPG+F V NAL+A  +   + 
Sbjct: 299 TVSTTRDADWTVAGTHQSEHGGTVIDIRGPGEALTVEIVLPGDFNVANALLAVAMLRQVD 358

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + +  +   L    V PGR E       G  + VD+AHT +++E+ L+  R  T GR+  
Sbjct: 359 VPADEIAAGLRTARV-PGRMETF-LRPDGLAVIVDFAHTPDAVELALRAARGATKGRLYA 416

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FI 440
           V GCGGDRD GKRP MG  A   AD  IVTDDNPR EDP  IRA  + G           
Sbjct: 417 VVGCGGDRDPGKRPAMGAAAARAADTVIVTDDNPRGEDPATIRAAAVEGARAAVPDVELR 476

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           E G+R  AIRTAIE+    D +VV GKGHET
Sbjct: 477 EVGDRRAAIRTAIELAGPGDTVVVLGKGHET 507


>gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
 gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
          Length = 493

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 224/456 (49%), Gaps = 20/456 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            N+++ DSR +  G +F+AI G++ DG  +I  A+ QGA A +V +              
Sbjct: 19  FNKLTLDSRAVGPGDLFIAIPGHQADGRKYIRSAVQQGAVASLVHTDDPESHGKCVDDEG 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             IL     R+ LS  A++ Y    E   ++ VTGT+GK+S+   + Q+    G  S  +
Sbjct: 79  KQILFFQLNRQ-LSALAAQAYPLSAERLKLVGVTGTNGKTSITQLMAQLVTLLGKQSAVM 137

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +     D+  TT   I +   L    +QG    ++E SSHGL Q R++ +    
Sbjct: 138 GTLGNGLWGDLVDSGNTTADAITMMAQLQEFDAQGAELCAMEVSSHGLIQGRVEAVPFDV 197

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH T QAY +AK RLF    P  S  +I  DD   K+ +   H+ G +
Sbjct: 198 AVFTNLSRDHLDYHGTMQAYGDAKKRLFN--FPSLSSGLINLDDEIGKQWLAE-HDTG-K 253

Query: 267 VLSVGYQGKFIHLKKVCAI--------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             S    G+   ++   AI        H      +   G   D   PL G F + N + A
Sbjct: 254 YTSFSIHGEPASIENSKAIYTQNNHFHHQGVDAKLVWPGGHADLCSPLLGSFNLSNLIAA 313

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G    +G D   ++  + KL  V GR E   T      I VDYAHT +++E  LK +R 
Sbjct: 314 LGALYLLGFDMHSLVAVVPKLQAVAGRMERF-TTPDDVTIVVDYAHTPDAIEQALKALRG 372

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G +  +FGCGGDRD+GKRP+M + A   AD  +VT DN RSE P+ I  +I+ G+  
Sbjct: 373 HCDGELWCLFGCGGDRDKGKRPLMAQAAEKYADRVVVTSDNARSEQPDVIINDILEGLTA 432

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               + + +R  AIR  +      D++++AGKGHET
Sbjct: 433 PDKALTQVDREVAIRQVVANAKAGDLVLLAGKGHET 468


>gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL001PA1]
 gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA2]
 gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA3]
 gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA4]
 gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL060PA1]
 gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA2]
 gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL103PA1]
          Length = 499

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 234/468 (50%), Gaps = 44/468 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     ++    A +   
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAILAAEAGV--- 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQ-ICQRSGLSSF 145
            PI+VVD+ R  +++ A++++G HP +   +  +TGT+GK++ A  V+  +C     +  
Sbjct: 73  -PIIVVDDPRAAMAVAAAKVFG-HPSDAMTMFGITGTNGKTTTAFLVEAGLCA----AGH 126

Query: 146 QIGPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +G   TI  F  D          +TTP    L    + ++ +G + V +E SSH L   
Sbjct: 127 HVGTIGTIG-FRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQ 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+DG      +FTNLGRDH+D+H T   YFNAK RLF   L +    +I  DD   ++++
Sbjct: 186 RVDGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLV 243

Query: 258 KRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +R    G + ++        YQ    H  +  AI +     +S    +      LPGEF 
Sbjct: 244 ERMQANGVKAVTTSIHQPSDYQVTSWHAARAGAIFD-----VSTPSGERTLELSLPGEFN 298

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA +A  +  A G+    V + L    V PGR E V          VD+AHT  ++  
Sbjct: 299 VRNAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIAS 357

Query: 372 ILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            L   R+ +  GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA
Sbjct: 358 ALDAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417

Query: 431 EIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            ++ G           I+ G R EAI  A+ M    DV+ V GKGHET
Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465


>gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 492

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 239/468 (51%), Gaps = 26/468 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +V+ D+R ++ G +FV I+G+  +GH    +A+ +GA  +V S    ++        
Sbjct: 24  EITKVTQDTREVEPGSLFVCIIGSLHNGHELAKEAVQKGAVLVVASEPLDVE-------- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P++ V+NT K +++ A+  Y    +N  ++ VTGT+GK++V   +  I       +  
Sbjct: 76  -VPVVYVNNTMKAMAILAAAFYDYPSQNLRVIGVTGTNGKTTVTHLLDYIFHDHKEKTGV 134

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I +   + + TTP  + L K L  +   GV   S+E SSH L Q R+ G    
Sbjct: 135 IGTMYRRIGAEVYETKNTTPDSLTLQKTLREMQENGVQTCSMEVSSHSLVQGRVWGTDFD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRA 260
              FTNL +DH++YH T + Y  AK  LF +L     ++ P  AI+  DD   +   ++ 
Sbjct: 195 IAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQDKPKFAILNFDDPVGRSFEEKT 254

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G             I NK  +  ++ E + ++    L G+F V NAL A 
Sbjct: 255 ---AASVFSYGIDQSADFKATDLRITNKGTRFNLNFEDQVYEVQLQLVGKFNVSNALAAI 311

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A G++   V++ L ++  V GRFE V        + VDYAHT + L  +L  +  I
Sbjct: 312 AGAYAAGLELPSVIQSLSQISGVRGRFEIV-KGEYDFAVIVDYAHTPDGLLNVLNAVNEI 370

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
            +G +  V GCGGDRD+ KRPIM +IA   +D  I T DNPR+EDP  I  E++ G+   
Sbjct: 371 KTGNVFCVVGCGGDRDRTKRPIMAEIAQKNSDTVIFTSDNPRTEDPNAILNEVVAGLEEE 430

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +    +R EAI++AI+     D++++AGKGHE   I+  G +K+  D
Sbjct: 431 SYQLIPDRREAIQSAIKQAAPNDIVLIAGKGHENYQII--GTEKIHFD 476


>gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis OX99.30304]
          Length = 492

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 232/477 (48%), Gaps = 34/477 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKF-----IHLKKVCAIHNKQQV---TISVEGKDFDFLFPLPGEFQVYNALVAA 319
           L+V Y   F     I +    A  +       T+  EGK    L    G F   N     
Sbjct: 258 LAV-YSYGFSEHADIRITDFTASSDGIAAVFQTLWGEGKCRTRLL---GRFNAQNLAACI 313

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ I
Sbjct: 314 ALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQEI 372

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                 +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P
Sbjct: 373 KPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVP 432

Query: 438 G-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 433 APECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
 gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
          Length = 501

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 241/472 (51%), Gaps = 24/472 (5%)

Query: 25  WRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           W E+ I   +++ DSR +  G +F+A+ G++ DG  FI  AI QGA AI+++ A S QD 
Sbjct: 14  WVEQLIPLKQMTLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGA-AIILAEAESDQDE 72

Query: 83  ----SATIRSN-----TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVAS 131
               S   R N       ++ V    + LS  A   Y      +  + +TGT+GK++ A 
Sbjct: 73  IELDSQFARYNLDRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQ 132

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            + Q     G  S  +G     +    Q+   TT S I + + L+    QG    ++E S
Sbjct: 133 LLAQWHNLLGGHSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVS 192

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL Q+R++ ++     FTNL RDH+DYH +  AY  AK RLF  L  K    ++ ADD
Sbjct: 193 SHGLAQYRVEALQYDLAIFTNLSRDHLDYHHSIAAYEAAKFRLFNALQTKAQ--VLNADD 250

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPG 308
             ++  +    NA        +  +   +K      + Q   I  E    +  F   L G
Sbjct: 251 QVAQNWLSMLPNAVLVSCDPNFTSEHQFVKATKVNFSLQGAYIEFESSWGNGQFHSQLSG 310

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTS 366
            F V N L+A    + +G D A ++    +L  V GR + V   +   R  + VDYAHT 
Sbjct: 311 AFNVTNILLALAGLLTLGYDLAKLVATASQLRSVTGRMQKVSAITDKNRPLVLVDYAHTP 370

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L+  L+  R  T G++  VFGCGGDRD GKRP+M  IA +LAD  IVT+DNPR+ED  
Sbjct: 371 DALQKALQAARLHTKGKLFCVFGCGGDRDCGKRPLMATIAEELADGVIVTNDNPRTEDQH 430

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           KI AEI+ G       +   +R +AI+ AI+  +  D++++AGKGHE   I+
Sbjct: 431 KIVAEIMQGFAKPDNILVIYDREQAIQHAIKHASSADLILIAGKGHENYQII 482


>gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Azoarcus sp. BH72]
 gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Azoarcus sp. BH72]
          Length = 501

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 229/459 (49%), Gaps = 32/459 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR +  G +F A  G+  DG  +I  AI +GA A++             +    P 
Sbjct: 22  ITADSRRVGPGAVFAAWPGHVTDGRRYIASAIERGAAAVLWEEGDGFHPGELPV----PG 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             V   R+     A  +Y +    +    VTGT+GK++V    Q + +  G    + G  
Sbjct: 78  FAVPRLRELAGALAHEIYDRPSARLWMAGVTGTNGKTTV---TQWLARALGELGSRCGIV 134

Query: 151 STISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T+ S   D       TTP  + L   L+ L  +G    ++E SS GLDQ R++G++   
Sbjct: 135 GTLGSGFPDQLSASLNTTPDALELHATLARLLGEGAAAAAMEVSSIGLDQGRVNGVEFDV 194

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH+T  AY  AK RLF   LP  S A+I  DDA+     +R   AG +
Sbjct: 195 AVFTNLTRDHLDYHRTMDAYAEAKARLFA--LPGISRAVINLDDAFGLTQARRLVAAG-Q 251

Query: 267 VLSVGYQ-----------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           V  +GY             + +   ++ A  +  Q ++   G+  D    +   F V N 
Sbjct: 252 VDVIGYTCVASNADAVPGARVLVADRLQASPSGLQFSLHWAGRQSDLQVRMVAPFNVSNL 311

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L   G  +  G+     L  + +L+   GR + VG       I +DYAHT ++L  +L+ 
Sbjct: 312 LAVIGALVMRGVAVEEALAVVGRLNPPEGRMQLVGGIGEP-LIVIDYAHTPDALAKVLEA 370

Query: 376 IR-TITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +R T+ S  GR++ VFGCGGDRD GKRP+MG++A  LAD  +VT DNPRSEDP KI   I
Sbjct: 371 VRGTVRSRGGRLVCVFGCGGDRDPGKRPLMGEVARQLADRVVVTSDNPRSEDPRKIIDAI 430

Query: 433 IHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             G     +   +R EAIR A+      DV+V+AGKGHE
Sbjct: 431 AAGAGASADCIVDRAEAIRIAVGEAGPDDVVVLAGKGHE 469


>gi|258546147|ref|ZP_05706381.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518572|gb|EEV87431.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 483

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 145/409 (35%), Positives = 207/409 (50%), Gaps = 30/409 (7%)

Query: 102 LSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           L   A+R Y  HP     ++ VTGT GKSS+  F+ Q    + L +   G    +   + 
Sbjct: 85  LGEIAARFY-DHPARALKLIGVTGTDGKSSLVHFLAQATGGAMLGTIGYGKLDALEPASH 143

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
               TTP P+ + + L+     G+  V++E SSH L Q R+  ++   G FTNL RDH+D
Sbjct: 144 ----TTPDPLRVQQYLARFRDAGIETVAMEVSSHALAQGRVAAVEYHIGVFTNLSRDHLD 199

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--KRAHNAGCRVLSVGYQGKF 276
           YH+  + YF AK  LF   LP    A+I  DDA+ + ++   R H    RV++V  Q   
Sbjct: 200 YHRDMEDYFLAKASLFARPLPV---AVINIDDAHGRRLLDENRVH-PKTRVIAVSSQ-NH 254

Query: 277 IHLKKVCAIHNKQQV--------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            H +    +  +  V        T+  E +       L   F V N L  A   +A+G  
Sbjct: 255 AHPRAALTLRARDIVLSPDGIAYTLETEAEQVAIQSGLLARFNVDNLLNTAACLLALGTP 314

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A +   L  LH VPGR E +G  + G    +DYAHT  +L  IL+ +R    G++  VF
Sbjct: 315 FAAIPAKLAALHGVPGRAERIGLGN-GAAAIIDYAHTPAALANILQGVRAHVPGKLWCVF 373

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----N 444
           GCGGDRD+GKRP+M + A   AD  ++TDDNPR+E+P  I A+ + G+ G  EK      
Sbjct: 374 GCGGDRDRGKRPLMAQAAEQYADAVVITDDNPRTENPADIIADSLRGM-GHREKAWIKRP 432

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R EAIR  +  L   D +V+AGKGHE   I+   +   S D + +R  L
Sbjct: 433 REEAIRFVLPQLEAGDAVVIAGKGHEDYQILGTTKHHYS-DQETVRTWL 480


>gi|227503275|ref|ZP_03933324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075778|gb|EEI13741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 511

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 167/477 (35%), Positives = 242/477 (50%), Gaps = 38/477 (7%)

Query: 32  EVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           EVS+   DS  +  G +F A+ G +  G  F+    A      V++ A  L D       
Sbjct: 23  EVSACGLDSASLPEGALFAALPGTRVHGAQFVGDTKA----GAVLTDAPGL-DHLRQANE 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
             PI+VVD+ R  L   A+ +YG HP   L V G +G S   +    ++    ++G S  
Sbjct: 78  TRPIIVVDDIRAVLGPIAAEIYG-HPTRDLTVLGITGTSGKTTTSYLLEAGLLQAGHSVG 136

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG T T I+       LTTP    L +  + +  +GVTHV +E SSH L+  R+ G   
Sbjct: 137 LIGTTGTRINRTPVPTSLTTPEAPRLQELFARMKEEGVTHVVMEVSSHALELGRVRGTNF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKRAHN 262
               F+NL +DH+D+H T + YF+AK RLF  E+   +   A+I  DD + + +     +
Sbjct: 197 AVAGFSNLSQDHLDFHPTMEEYFSAKSRLFLGEQAAQR---AVICVDDEWGERLRGMVKD 253

Query: 263 AGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           AG  V +V  +         +        Q+V ++++G D+ F  PLPGEF + NA +A 
Sbjct: 254 AGAPVTTVATRTGDATISARQTATEATGAQEVDLNLDGTDYSFRLPLPGEFNIANAALAL 313

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIR 377
           G+  A+G D  + L  +E +  VPGR E +    RG      VDYAH   ++  +L  +R
Sbjct: 314 GMATAVGEDPQVFLTGVENV-AVPGRMERI---DRGQDFVAVVDYAHKPAAIAAVLDTLR 369

Query: 378 ---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                TSGR+ VV G GGDRD  KRPIMG+ A   AD+ +VTDDNPR+EDP  IRA +I 
Sbjct: 370 LQLEGTSGRVGVVVGAGGDRDSTKRPIMGEAAATRADLTVVTDDNPRTEDPAAIRAAVIE 429

Query: 435 GI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           G           E+G+R  AI   ++     D ++V GKGHE   +V  GE+ +  D
Sbjct: 430 GARRAAPDADIREQGSRARAIDEVVDWAQPGDAIIVVGKGHEVGQLV--GERTLHFD 484


>gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Neisseria meningitidis H44/76]
 gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis CU385]
 gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis H44/76]
          Length = 492

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  V GT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G    F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  A+R A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAVRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alistipes sp. HGB5]
          Length = 485

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 237/455 (52%), Gaps = 36/455 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G  F A+ G + DGH FIP A+A+       ++A   +       ++   + V
Sbjct: 30  DSRAVGPGDCFFAVRGTQNDGHDFIPAAVAK------GAAAVVCERLPEQTAADVVYVAV 83

Query: 96  DNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASF----VQQICQRSGLSS---F 145
            +    L+  A+  Y  HP   L    +TGT+GK++  +     V+ +  ++GL S   +
Sbjct: 84  PDAAGALADMAAAFY-DHPSRALKLVGITGTNGKTTTVTLLYDLVRALGHKAGLISTVVY 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++G  +  ++       TTP P+ L   +  ++ +G  +  +E SSH + Q R  G+   
Sbjct: 143 KVGERTVGATH------TTPDPVRLNAMMREMADEGCEYCFMECSSHAIVQERTRGLHFA 196

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G F+N+  DH+DYH+T   Y  AK +LF + L KE+ A+  ADD   + VM +   A  
Sbjct: 197 GGIFSNITHDHLDYHKTFAEYIRAK-KLFFDSLSKEAFALTNADDKNGR-VMVQNTAAAI 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+     F    K+  +H    + + ++G++      L G F  YN L   G  + +
Sbjct: 255 HTYSLRSMADF--RCKIVEMH-PDGMLLRIDGQEV--WVGLVGRFNAYNLLAVYGAAVLL 309

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--R 383
           G D    L     LH V GRFE V  ++ G    VDYAHT ++LE +++ I  I +   +
Sbjct: 310 GFDRGETLRAASMLHPVSGRFELV-RSANGVTAVVDYAHTPDALENVIRTIEEIRTPAQK 368

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PG--FI 440
           +IVV GCGGDRD+ KRP M +IA+  AD A+ T DNPR E PE I  ++  G+ PG  F+
Sbjct: 369 LIVVCGCGGDRDRTKRPEMAQIAVRYADTAVFTSDNPRHESPEAILDQMAAGLEPGARFL 428

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
              +R EAIRTA+ +    D+L+VAGKGHET  IV
Sbjct: 429 RIADRAEAIRTAVMLSQPGDILLVAGKGHETYQIV 463


>gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
          Length = 492

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 231/463 (49%), Gaps = 27/463 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +++DSR ++ G++FV + G   DGH F  QA+  GA A++     S QD       
Sbjct: 22  EITGLTADSRQVKPGYLFVCLTGYTVDGHTFAAQAVKNGAVAVL-----SEQDLDVP--- 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
              I+ V +TR+ +++ A R++G   + +  +  T       +   + +I +     +  
Sbjct: 74  -ATIVKVPDTRRAMAMLADRIFGSPTKEVKVIGVTGTNGKTTTTHLIDKILRDQSKQTGL 132

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I    ++ + TTP  I L ++   +      +  +E SSH L+  R+ G ++ 
Sbjct: 133 IGTIHMRIGDVTEEVKNTTPDAIDLQRSFRRMCDVNTDYAIIEVSSHALELGRVRGCEIH 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260
              FTNL +DH+DYH+T + Y  AK  LF +L       +   A++ ADD  S+     A
Sbjct: 193 TAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNGYDTDRLKTAVLNADDEASE---LYA 249

Query: 261 HNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                RV++ G  Q   +  K++         T+            L G+F VYNAL A 
Sbjct: 250 TVTPARVITYGIDQPADVRAKQIEITSKGTSFTVESFAGSARLNLRLMGKFNVYNALAAI 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +A GI    +   LE++  V GRFE V        + VDY+HT +SLE  L  ++  
Sbjct: 310 AVTLAEGIPLEAIKASLEEVAGVNGRFEAVDAGQPFA-VLVDYSHTPDSLENALMTVKEF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             G +  + GCGGDRD+ KRPIM +IA   AD+ ++T DNPRSE+P+ I  +++ G+   
Sbjct: 369 ARGNVFCIVGCGGDRDRTKRPIMAQIATKYADLTVLTSDNPRSEEPQAILDDMLAGLSEV 428

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
               +    +R EAI  A+ +    DV+++AGKGHET  I+ +
Sbjct: 429 APDRYTALTDRREAIAHAVSLAKPDDVILIAGKGHETYQIIKD 471


>gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 501

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 179/517 (34%), Positives = 267/517 (51%), Gaps = 37/517 (7%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L+DLI   +  E+  +L        +  +  +  DSR +    +FVAI G   DGH +
Sbjct: 1   MRLKDLINSIELVEIAGELH------EDTPVGSICFDSRKVGPNAVFVAIRGFNTDGHQY 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I QA+   A AIV       ++   +  S+   L V ++R+ L+  A R Y    +   +
Sbjct: 55  INQAVEADAMAIVC------EEIPKSWSSHQLFLKVWDSREALAKIAKRFYENASDELKV 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALS 175
           + VTGT+GK++    ++ I   + + +  IG T  I  +   + +R TTP  + L +   
Sbjct: 109 IGVTGTNGKTTTTGMIKCILDANEIKTGLIGTTGYIIGNQLYELDR-TTPDALELHQLFH 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G   V +E SSH L   R  GI+     FTNL  DH+D+H +  AY +AK  LF+
Sbjct: 168 KMLEAGCRAVVMEVSSHALALKRTAGIRFDIAVFTNLTHDHLDFHGSMTAYADAKKLLFD 227

Query: 236 ELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV---GYQGKFIHL--KKVCAIHNK 288
            L  + + A+I ADD Y+++++K  +A+   C V++      +   I +  K      N 
Sbjct: 228 NL-SESAFAVINADDDYAEKMVKDCKANIVRCGVINAREKELENPIIDVMAKVFSYTING 286

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               I+ +       F   G+F +YN + A    +A G D   ++  L K   V GR + 
Sbjct: 287 TSAIIADDKNSMMHQFRTLGKFNMYNTVEAYAAGLAFGFDRIHIIRGLMKCPPVRGRMQQ 346

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           V +      I VDY+HT ++LE  L+ I  +   +GRII +FGCGGDRD+ KRP+MGKIA
Sbjct: 347 VWSKDHRCAI-VDYSHTPDALENALQTICLVKPENGRIITLFGCGGDRDKEKRPLMGKIA 405

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D +DI I+T DNPRSEDPEKI  +I   IH    F    +R  AIR AI +L + DV +
Sbjct: 406 EDNSDIIIITSDNPRSEDPEKILDDIQAGIHKQNNFYRIVDRETAIRKAITLLTRGDVAL 465

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDII----REILGLI 496
           +AGKGHET   +  G+K    D +II    RE  GLI
Sbjct: 466 IAGKGHETYQEIA-GKKFHFDDKEIIESVFREQEGLI 501


>gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
 gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
          Length = 487

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 164/512 (32%), Positives = 259/512 (50%), Gaps = 54/512 (10%)

Query: 9   KDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL+N +++  +    +R+I  +  DSR I+ G +F+A  G   DGH FI +A+ +G
Sbjct: 2   KKLKELLNGVNVGKVYGDTDREIGHIHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTRG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPE---NILAV 120
           A A+V             +  N P     +   +T + L + A   Y  +P     ++ V
Sbjct: 62  AVAVVCEQ----------LPENRPEEVTYIWTADTSEALGVMAGN-YWDNPSRELKLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176
           TGT+GK++ A+ + ++ + +G  +   G  ST+ ++  + ++    TTP  + + + L  
Sbjct: 111 TGTNGKTTTATLLYELVRLAGEKA---GLLSTVCNYIGEEKIPATHTTPDALSIQELLRR 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  +  +EASSH + Q R+ G+      F+N+  DH+DYH+T +AY  AK   F+ 
Sbjct: 168 MVDAGCRYCFMEASSHAIHQKRIAGLDFDGAIFSNITHDHLDYHKTFKAYIEAKKAFFDR 227

Query: 237 LLPKESPAIIYADDAYSKEVMK--RAH--NAGCRVLSVGYQGKFI--HLKKVCAIHNKQQ 290
            LP  + A+  ADD     +++  RAH     CR ++  +  K I  HL       + ++
Sbjct: 228 -LPAHAFALTNADDKNGLVMLQNTRAHRYTYSCRTMA-DFTAKAIEKHLDGTLLRLDGEE 285

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V                G+F  YN L        +G     VLE++  L  V GRFE + 
Sbjct: 286 VWTK-----------FTGDFNAYNLLAVYAAARLLGFPKENVLEYVSLLVPVSGRFETL- 333

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            ++ G    VDYAHT +++E +L  I  +     ++I V G GGDRD+ KRP M   A  
Sbjct: 334 ISTEGVMAVVDYAHTPDAVENVLSTICGLKGRDNQVITVVGAGGDRDKTKRPEMADAACR 393

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEK----GNRIEAIRTAIEMLNKQDVLV 463
            +D  I+T DNPRSEDPE+I  +++ G+  GF  +     +R EAIR AI M +K D+++
Sbjct: 394 YSDHVILTSDNPRSEDPEQIIRDMLTGVKEGFQYRVEAITDRKEAIRKAIGMASKGDIIL 453

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           VAGKGHE    V  G K    D ++IREI  L
Sbjct: 454 VAGKGHENYQEV-KGVKHHFDDKEVIREIFDL 484


>gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
 gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
          Length = 493

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 152/458 (33%), Positives = 235/458 (51%), Gaps = 23/458 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I+ G +F A  G K DG  FI  AI +GA AI+V      ++++  ++S+
Sbjct: 20  IKGLCQDSRQIKPGDLFFAYKGLKSDGRYFIKDAIKKGAAAILVEPD---ENYTIHLKSS 76

Query: 90  T-PILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSF 145
           + PI+ + +    L   A+R YG +P   L V   TGT+GK+S   F+    Q+   S  
Sbjct: 77  SIPIIALHHLTSQLGSLAARFYG-YPSRYLPVIGITGTNGKTSCTHFLADSLQKLQRSCG 135

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG          +  +LTTP  I L + L+   +Q    V +E SSH L Q RL+G + 
Sbjct: 136 VIGTLGNGFYGHLKRAQLTTPDAIELQQLLAAFRAQHAQTVVMEVSSHRLAQKRLNGTEF 195

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNA 263
              + TNL RDH+DYH+T  AY  AK   FE  LP     ++ ADD Y++  +       
Sbjct: 196 SVAALTNLTRDHLDYHKTMDAYAKAKRSFFE--LPGVQHIVLNADDPYAQLWLTEFEKQL 253

Query: 264 GCRVLSVGY-QGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFP---LPGEFQVYNAL 316
                S+   Q ++ H+ +V       N+Q +   ++    D       L G F + N L
Sbjct: 254 PISTYSLKRPQARWSHIPQVTVKKFDFNQQGLQAEIDTPWGDVFIENQFLMGAFNLSNLL 313

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +   +  ++    A + + L +L    GR +      +   + VDYAHT ++L+ +L+ +
Sbjct: 314 LVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTFRVKGK-AIVVVDYAHTPDALQQVLQAL 372

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R+   G++  +FGCGGDRD+GKRP+M  IA + AD  IVT+DNPR EDP +I  +I  G 
Sbjct: 373 RSHCRGQLYCLFGCGGDRDKGKRPLMAAIAEEGADHIIVTNDNPRYEDPFQIFQDIRQGF 432

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            G      +  R +AI  A++     D++++AGKGHE+
Sbjct: 433 KGNKAIYYEPERKKAIAYALKAAQPSDIVLIAGKGHES 470


>gi|300780827|ref|ZP_07090681.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532534|gb|EFK53595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 498

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 231/464 (49%), Gaps = 37/464 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S DS  +++G +F A+ G +  G  F   A A  A A++   A    D        
Sbjct: 27  VSAISLDSNAVKSGAMFAALPGTRVHGATF---AHASDASAVLTDDAG--WDILRETGFE 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146
            P+LVV+  R  L   A+ +YG HP   L V G +G S   +    ++     +G +   
Sbjct: 82  RPVLVVERVRDILGDVAAEIYG-HPTEHLTVIGVTGTSGKTTTTYLLESGLTAAGCAVGL 140

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG T T I        LTTP    L +  + + S+GVTHV +E SSH L   R+DG K  
Sbjct: 141 IGTTGTRIKGEDVPTSLTTPEAPKLQELFADMVSRGVTHVVMEVSSHALVLGRVDGTKFA 200

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--- 262
           A  FTNL +DH+D+H T + YF AK  LF+    +   A++  DD + +++ +RAH+   
Sbjct: 201 AAGFTNLSQDHLDFHPTMEDYFEAKAILFD----RAEKAVVCIDDEWGQKMTQRAHSPVT 256

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G    S     +   + +  A    Q +T+ + G+D     PLPG F + N  +A  L 
Sbjct: 257 VGVHNTSADCTARLDSVTESGA----QDITVRIGGQDISTRIPLPGAFNIANTALATALA 312

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTI 379
            ++GID  + L+ L+   V PGR E V      G+ +V   DYAH   ++   L ++R  
Sbjct: 313 DSVGIDPKVFLQGLDAARV-PGRMERVSV----GQPFVAVVDYAHKPAAVAAALDSLREQ 367

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             GRI VV G GGDRD  KRP+MG  A   AD+ I+TDDNPR+EDP  IRA +  G    
Sbjct: 368 VDGRIGVVVGAGGDRDHSKRPLMGAEAATRADLVIITDDNPRTEDPAAIRAAVKQGAESV 427

Query: 440 I--------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I        E  +R +AI   +      D ++V GKGHE   I+
Sbjct: 428 IDGAATDIREVASRAQAIADLVAWAEPGDAIIVVGKGHEVGQII 471


>gi|291326817|ref|ZP_06125981.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
 gi|291312721|gb|EFE53174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
          Length = 471

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 165/486 (33%), Positives = 240/486 (49%), Gaps = 44/486 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +F+AI G++ DG  +IPQAIAQG  A++  +     +         P++ +
Sbjct: 4   DSRKAAAGDLFIAIKGHQSDGRHYIPQAIAQGVSAVIAEAEGEAVEGEIRFVHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++    LS  A   Y   P   + + G +G +   +  Q I Q +      +G TS +  
Sbjct: 64  NDLNNRLSALAGEFY-HQPSAKMKLVGVTGTNGKTTTTQLIAQWAQ----GLGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L +Q  T  ++E SSHGL Q R+  ++  A 
Sbjct: 119 TVGNGLLGHVSPSENTTGSAVDIQLELTQLLNQKATLTAMEVSSHGLVQGRVADLQFDAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   ++Y  AK  LF     K    II ADDA   + ++R   A C V
Sbjct: 179 VFTNLSRDHLDYHGDMESYEAAKWLLFSTHNTKSQ--IINADDAIGLKWLQRLPQA-CAV 235

Query: 268 -----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAG 320
                +   +QG +  LK +   ++ +  TI  +    + DF  PL G F V N LVA  
Sbjct: 236 TMENKIPQDWQGPW--LKAMEVEYHDKGATIHFDSSWGNGDFESPLMGAFNVSNLLVAMA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +      +L     L  V GR E     ++   + VDYAHT ++LE  L   R   
Sbjct: 294 TLLMMDYPLNKLLAATSSLSPVCGRMEVFSAPNKP-TVVVDYAHTPDALEKALAAARLHC 352

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG----- 435
            G++  VFGCGGDRD+GKRP+MG  A + AD  ++TDDNPRSEDP  I  +I+ G     
Sbjct: 353 KGQLWCVFGCGGDRDKGKRPLMGAAAEEYADKIVITDDNPRSEDPIDIINDIMAGLLDSS 412

Query: 436 ----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIR 490
               IPG      R EA+   I   +  DV+V+AGKGHE   I+  G++K+   D   + 
Sbjct: 413 RALAIPG------RPEAVTNTILQASPDDVIVIAGKGHEDYQII--GQRKLDYSDRLTVA 464

Query: 491 EILGLI 496
            +LG+I
Sbjct: 465 RLLGVI 470


>gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 493

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 163/481 (33%), Positives = 239/481 (49%), Gaps = 48/481 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR I +G  FV I G   DGH ++ QA+  GA AI  S    ++++      
Sbjct: 23  EITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAVKNGASAIFTSKPL-MKEYGV---- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             PI+ V++T + L++ A + Y  +P     ++ VTGT+GK++V   + +I +     + 
Sbjct: 78  --PIIQVEDTNRALAMLAVKYY-DYPTKHFPLIGVTGTNGKTTVTYLLDKIFEYHQKKAG 134

Query: 146 QIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            IG         +F   N  TTP+ + L K    +  + V    +E SSH LD  R+ G 
Sbjct: 135 VIGTIQVKIGEETFPIVN--TTPNALELQKTFHVMREKDVKQGIMEVSSHALDMGRVYGC 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVM 257
                 FTNL +DH+DYHQ  Q Y  AK  LF +L       KE  AII  DD+ S  ++
Sbjct: 193 DYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSEKEKYAIINDDDS-SSHLL 251

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------G 308
           KR+        S          KK   I  K  + ++  G  F    PL          G
Sbjct: 252 KRSTAQHVITYSC---------KKEATIMAKD-IELTASGIRFKLHSPLGNITIQSRLMG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F VYN L A+   IA  +   ++ + LE +  V GRFE +    +   + VD+AHT +S
Sbjct: 302 MFNVYNMLAASAAAIASKVPLNVIQQALESIEGVNGRFEPI-VEGQNYSVIVDFAHTPDS 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ I+      + VV GCGGDRD+ KRP+M ++AL+ AD A+ T DNPR+EDP+ I
Sbjct: 361 LENVLQTIKDFAKRNVYVVVGCGGDRDRKKRPLMAEVALNYADHAVFTSDNPRTEDPQAI 420

Query: 429 ----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
                AE+      +    +R E I  AI+   K D++++AGKGHET  I+  G  K   
Sbjct: 421 LDDMTAELDANSGSYEVVVDRKEGIAKAIQSAQKDDIVLIAGKGHETYQII--GHTKYDF 478

Query: 485 D 485
           D
Sbjct: 479 D 479


>gi|78046382|ref|YP_362557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034812|emb|CAJ22457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 491

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 223/455 (49%), Gaps = 25/455 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++         F      
Sbjct: 17  QVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVL---------FEPPAPD 67

Query: 89  NTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
             P+    + V   R  L + A + +G+  +   ++ VTGT+GK+S    + Q     G 
Sbjct: 68  GLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 127

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D 
Sbjct: 128 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH     Y  AK +LF     K   A++  DD + + +   A 
Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDGFGRTLFA-AL 244

Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +   R + V    +    +  + +   HN     ++V+G+      PL G F V N L  
Sbjct: 245 DPALRAIGVSSRAHADASVSAQALQLDHNGINFALNVQGQVHPVHSPLLGRFNVDNLLAV 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG   A+    A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+
Sbjct: 305 AGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 364

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
               R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G   
Sbjct: 365 HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFAR 424

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               I + +R  AI  AI M +  D++++AGKGHE
Sbjct: 425 PDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHE 459


>gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 483

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 162/508 (31%), Positives = 256/508 (50%), Gaps = 40/508 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+DL+          + I  ++  E  +I  + +DSR   AG  F+A+ G + DGH +
Sbjct: 1   MKLKDLL--------KGIDIVEIKGNENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  A+  GA+ ++       Q+   T R     + V ++       A+  YG     +  
Sbjct: 53  INNALDLGAKVVI------HQEKVDTSREGITYIKVKDSADAAGKIATLWYGDPSAKLKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK++ A+ + ++ ++ G    ++G  ST++++          TTP P+ L + 
Sbjct: 107 VGVTGTNGKTTTATLLYEMFRKFG---NKVGLLSTVANYIDGTVYHATHTTPDPLSLNEM 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +   G  +  +E SSH + Q R+ G+K   G FTN+ +DH+DYH+T   Y  AK ++
Sbjct: 164 LAKMVDAGCEYAFMEVSSHAIHQKRISGLKFDGGIFTNITQDHLDYHKTMAEYLKAK-KM 222

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP+ + A+  ADD  +  VM +   A     SV     F        I  K     
Sbjct: 223 FFDNLPETAFALTNADDK-NGAVMLQNTKAKKYTYSVKTLADF-----KAKIIEKHFDGT 276

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +VE  + +      G F VYN L   G  + +G D    L  L  L  V GRFE + +  
Sbjct: 277 AVEFNNKELQVQFVGVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLRSPE 336

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
               I VDYAHT ++L  +L+ I  +   +GR+I V GCGG+RD+ KRPIM + A+ L+D
Sbjct: 337 NYTAI-VDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLSD 395

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-----RIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR E+P+ I  ++  G+     K       R +AI+TA  +  + DV+++AG
Sbjct: 396 QVILTSDNPRFEEPQAIINDMADGLNSQQMKKTLLIVEREQAIKTACTLAKEGDVILIAG 455

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHE    V  G K    D +++R I G
Sbjct: 456 KGHEDYQDV-KGVKHHFDDREVVRNIFG 482


>gi|294828010|ref|NP_712228.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
 gi|302393763|sp|Q8F4J4|MURE_LEPIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|293385856|gb|AAN49246.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 504

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 177/533 (33%), Positives = 260/533 (48%), Gaps = 68/533 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAI--VGNKEDG 56
           MKL  L+ K FPE+  +L  FP        +I  + SDSR      IF     +G+K+  
Sbjct: 1   MKLTSLLLK-FPEI--KLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIFCVADSIGSKK-- 55

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115
             FI  A A  +  ++ + +  L D    + S+   L  + +  +     AS L G HP 
Sbjct: 56  KEFISNAKA--SLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLG-HPS 112

Query: 116 ---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171
              +I+AVTGT+GK+S+ + +  + +  G++   IG           D   TTP    L 
Sbjct: 113 KDLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLN 172

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L  +  +G+T V +EASSHGL   R++GI + AG FTNL +DH+D+H   + YF +K 
Sbjct: 173 LILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKF 232

Query: 232 RLFE------------------------ELLPKESPAIIYA-DDAYSKEVMKRAHNAGCR 266
           RLFE                        ++L +    +IYA DD Y K  +         
Sbjct: 233 RLFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISD------- 285

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +S+  QG       V  +   Q+  IS           L G F V N  +A    I IG
Sbjct: 286 -ISLNLQGT----SYVLGLPGNQERKISTN---------LLGSFNVRNTALAFLTGIGIG 331

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D   +   LEK+  +PGRF+ + +  R     VDYAHT ++LE I++++R      +I 
Sbjct: 332 LDLEKMSNSLEKIPQIPGRFQIIYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLIT 391

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI---EK 442
           +FGCGGDRD+ KRP M +IA +L+D  I+T DNPR+E PE I  EI  G   GFI    +
Sbjct: 392 LFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLRE 451

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +R +AI   I  L +   L+VAGKGHE   I+   EK+   D + +++  GL
Sbjct: 452 VDRAKAIVEGISCLPEGGCLLVAGKGHEEYQIIGK-EKRHFSDVEEVQKAFGL 503


>gi|262044871|ref|ZP_06017914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037840|gb|EEW39068.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 471

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 235/463 (50%), Gaps = 35/463 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D         P++ +
Sbjct: 4   DSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
               + LS  A R Y   P   L + G +G +   +  Q + Q + L    +G TS +  
Sbjct: 64  SQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL----LGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   LS L  QG T  ++E SSHGL QHR+  ++  A 
Sbjct: 119 TVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAAS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + +  +A    
Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236

Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +    +    G++  LK     ++    TI   S  GK  +    L G F V N L+A  
Sbjct: 237 MEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGKG-EIESRLMGAFNVSNLLLALA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A+G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R   
Sbjct: 294 TLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKALQAARLHC 352

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   + G +
Sbjct: 353 SGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGML 409

Query: 441 EKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + G       R +A+  A+    + DV++VAGKGHE   IV N
Sbjct: 410 DAGQAKVMEGRAKAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 452


>gi|291086123|ref|ZP_06354888.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069447|gb|EFE07556.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
          Length = 471

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 157/474 (33%), Positives = 235/474 (49%), Gaps = 20/474 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   +G +FVA++G++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST- 152
               + LS  A R Y +  E +  V  T           + Q CQ  G +S  +G     
Sbjct: 64  SQLNERLSALAGRFYHEPSEKMRLVGVTGTNGKTTTTQLLAQWCQLLGETSAVMGTVGNG 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  FTNL
Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLAGLVAQGATVGAMEVSSHGLVQHRVAALKFAASVFTNL 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---- 268
            RDH+DYH   + Y  AK  L+      +  AI+ ADD   +  + +  +A    +    
Sbjct: 184 SRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +    G+++    V    +   +  +    + +    L G F V N L+A    +A+G  
Sbjct: 242 NPNCHGRWLKAVDVNYHDSGATIRFTSSWGNGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R   +G++  VF
Sbjct: 302 LADLLKTAARLQPVCGRMEVFSAPGKT-TVVVDYAHTPDALEKALQAARLHCTGKLWCVF 360

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----- 443
           GCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+E+P  I  +I   + G ++ G     
Sbjct: 361 GCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEEPRAIINDI---LAGMLDAGRAKVM 417

Query: 444 -NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI    + DV++VAGKGHE   IV +     S    + R +LG+I
Sbjct: 418 EGRAEAVTNAIMQAQENDVVLVAGKGHEDYQIVGSQRLDYSDRVTVAR-LLGVI 470


>gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 514

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 142/492 (28%), Positives = 248/492 (50%), Gaps = 37/492 (7%)

Query: 13  ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L++ + I P +   + +IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAEA 
Sbjct: 8   KLLDLVGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAA 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           ++ SA   ++   +I     +++ DN         +  + +    +  + VTGT+GK+++
Sbjct: 68  IIGSAA--KERIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ + ++ G  +   G   +    F++    TT     L K L+           +E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246
            SSH + Q R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+  +++
Sbjct: 186 VSSHSIAQKRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGISVL 245

Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTI 293
             DD +    S ++ KR+     ++    ++          KF      C  H  ++   
Sbjct: 246 NHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE--- 302

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352
                      PL GEF + NA+ A  +   +      + + ++     PGR E +  + 
Sbjct: 303 -----KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDD 357

Query: 353 ---SRG-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              SR    + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +
Sbjct: 358 SDVSRSLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEE 417

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           L+D   +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++A
Sbjct: 418 LSDQLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIILIA 477

Query: 466 GKGHETVHIVTN 477
           GKGHE   I+ +
Sbjct: 478 GKGHEDYQILND 489


>gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
 gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
          Length = 498

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 238/469 (50%), Gaps = 46/469 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           W ++       DSR ++ G IF+A+  +   E    F  +A+ QGA A++          
Sbjct: 17  WMKQSFQGFELDSRKVKPGQIFIALTSLSQPEKTVQFAQKALEQGALAVI---------- 66

Query: 83  SATIRSNTPILVVDNTRKFLSLFASR-LYGKHP---ENILAVTGTSGKSSVASFVQQICQ 138
           S T    +P LVV + R  +  +  + L    P     ILAVTGT+GK++++  V +   
Sbjct: 67  SETEPDVSPNLVVSDVRHLMGQWQKQYLQATQPVTAARILAVTGTNGKTTISRLVAEFIM 126

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G +   +G T   I    + +  TT   + L  AL   +  G    S+EASSHGL+Q 
Sbjct: 127 LQGKACAVMGTTGNGILPNLEASSHTTLDALQLQNALHGYAQAGAEFASIEASSHGLEQG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RL+G  +    ++NL RDH+DYH T QAY  AK  LF         A+I  DD +++ ++
Sbjct: 187 RLNGCDIEIAGYSNLSRDHLDYHGTLQAYAEAKSGLFR--FESLKVAVINIDDEHAQIML 244

Query: 258 KRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PL 306
             A N  A  ++L+     K        A +  Q +  S+ G  F             PL
Sbjct: 245 DAAKNNPAQPKILTYSTTQK--------ADYQVQDIQYSISGATFKLKTASAEYIVNSPL 296

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHT 365
            G F + N + +  +    G +   ++  + +L   PGR + +     G R++V DYAHT
Sbjct: 297 LGHFNIENLVASLIMAEQAGFELESLIATVPQLKGAPGRMQVL---RDGERLFVVDYAHT 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L  ++   S  +  VFGCGGDRD+GKRP+M + ALD +DIA++T DNPR+EDP
Sbjct: 354 PDALTQVLVTLKRHVSQNLWAVFGCGGDRDRGKRPLMTQAALDGSDIAVLTSDNPRTEDP 413

Query: 426 EKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +I A++ +GI      + E  +R EAI+ A++     D++V+AGKGHE
Sbjct: 414 AQIFADMKNGIDFSGKTYHEIHDRREAIKFAVKHAQAGDIVVIAGKGHE 462


>gi|45657730|ref|YP_001816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|59798331|sp|Q72R81|MURE_LEPIC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|45600970|gb|AAS70453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 506

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 177/533 (33%), Positives = 260/533 (48%), Gaps = 68/533 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAI--VGNKEDG 56
           MKL  L+ K FPE+  +L  FP        +I  + SDSR      IF     +G+K+  
Sbjct: 3   MKLTSLLLK-FPEI--KLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIFCVADSIGSKK-- 57

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115
             FI  A A  +  ++ + +  L D    + S+   L  + +  +     AS L G HP 
Sbjct: 58  KEFISNAKA--SLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLG-HPS 114

Query: 116 ---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171
              +I+AVTGT+GK+S+ + +  + +  G++   IG           D   TTP    L 
Sbjct: 115 KDLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLN 174

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L  +  +G+T V +EASSHGL   R++GI + AG FTNL +DH+D+H   + YF +K 
Sbjct: 175 LILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKF 234

Query: 232 RLFE------------------------ELLPKESPAIIYA-DDAYSKEVMKRAHNAGCR 266
           RLFE                        ++L +    +IYA DD Y K  +         
Sbjct: 235 RLFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISD------- 287

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +S+  QG       V  +   Q+  IS           L G F V N  +A    I IG
Sbjct: 288 -ISLNLQGT----SYVLGLPGNQERKISTN---------LLGSFNVRNTALAFLTGIGIG 333

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D   +   LEK+  +PGRF+ + +  R     VDYAHT ++LE I++++R      +I 
Sbjct: 334 LDLEKMSNSLEKIPQIPGRFQIIYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLIT 393

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI---EK 442
           +FGCGGDRD+ KRP M +IA +L+D  I+T DNPR+E PE I  EI  G   GFI    +
Sbjct: 394 LFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLRE 453

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +R +AI   I  L +   L+VAGKGHE   I+   EK+   D + +++  GL
Sbjct: 454 VDRAKAIVEGISCLPEGGCLLVAGKGHEEYQIIGK-EKRHFSDVEEVQKAFGL 505


>gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
 gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
          Length = 488

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 235/465 (50%), Gaps = 42/465 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +    +++DSR +QAG +F+A  G   DG     Q I Q  +A   +  +  + F+    
Sbjct: 9   KSFTSITADSRKVQAGSLFLAYPGLHNDGR----QYIGQAVQAGAAAVVWEQEGFTWNAD 64

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144
                L V + ++ +   A+  Y ++P +   ++ VTGT+GK+SV+ ++ Q     G  +
Sbjct: 65  WQVSNLAVQDLKQQVGGIAAEFY-QNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKT 123

Query: 145 FQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        AQ     TTP  I L   L+    Q    V++E SSHGLDQ R++G+ 
Sbjct: 124 AVLGTIGNGFLGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGRVNGVA 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMK--R 259
                 TNL RDH+DYH+T +AY  AK +LF  E L+     AI+  DDA+ K ++    
Sbjct: 184 FDVAVLTNLSRDHLDYHETMEAYAAAKQKLFAWEGLIT----AIVNTDDAFGKSLVSALN 239

Query: 260 AHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYN 314
           A +  C    + S   QG  + L           +T+ +       L   P  G F  YN
Sbjct: 240 AQDKPCLTYGLTSADVQGSDLKLHDTG-------LTMQINTPQGHALLSAPVLGRFNAYN 292

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEM 371
            L      +A+ +     LE + K+  V GR +  G    GG    + +DYAHT ++LE 
Sbjct: 293 VLAVLATLLALKVSLPDSLEAIAKIKPVLGRMQQFG----GGDLPLVVIDYAHTPDALEK 348

Query: 372 ILKNIR-----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +L  ++       +S ++I VFGCGGDRD GKRP+MG IA  LAD   VT DNPRSE+P 
Sbjct: 349 VLSTLKEQIDLAASSVKLICVFGCGGDRDAGKRPLMGNIASKLADQVFVTSDNPRSENPA 408

Query: 427 KIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I A ++  +  G++   +R  AIR AI+  N  D+++VAGKGHE
Sbjct: 409 AIIAAVVSEMKAGYVVDADRANAIRAAIQGANSGDIVLVAGKGHE 453


>gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 515

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 152/483 (31%), Positives = 247/483 (51%), Gaps = 33/483 (6%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F ++  +  +  +  DSR +     F+A+ G+  DG  FIPQA++ GA+ I+     
Sbjct: 19  LAKFGIETADIMVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQAVSLGAKVIIAECDT 78

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQ 135
             +    ++R  + I+   +    LS  A+  Y        I+ VTGT+GK+S      Q
Sbjct: 79  QQEHGQTSMREQSLIISFYDLSAQLSALAATFYHFPASEMQIIGVTGTNGKTSTVQLTSQ 138

Query: 136 IC----QRSG----LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +     +R+     L S  I  T   +SF +    TTP  I + K ++  +   V  V++
Sbjct: 139 LAALLNKRAASIGTLGSGVISCTGECASFGETIN-TTPDAITMHKLMAQFAQDNVKQVAL 197

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L Q R+  +K+     TNL RDH+DYH T QAY  AK  +  +  P+   A++ 
Sbjct: 198 EVSSHALVQKRVAALKVDVAVLTNLTRDHLDYHGTMQAYAQAKREILTQ--PELKFAVLN 255

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFL- 303
            ++  SK+ + +  N    V+  G   + + L   +KVC     ++V  S +G  F  + 
Sbjct: 256 GNEIESKQWLAQLPNTVTPVV-YGIDDESLLLGNAQKVCL---AKEVEYSSQGCRFTLVS 311

Query: 304 --------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     L G F ++NAL A    + +G     + +  ++L  V GR E   ++ + 
Sbjct: 312 SWGECEIQLSLLGRFNIFNALAAIASQLCLGQALTDIADVAQQLVPVAGRMERF-SDEKS 370

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++L+  L  +R  + GR+ V+FGCGGDRD+GKR +MG+ A   AD+ ++
Sbjct: 371 PTVVVDYAHTPDALKQALLALRQHSEGRLFVIFGCGGDRDKGKRSLMGEAAETCADVVMI 430

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T+DN RSEDP  I ++I+ G   P  I+ + +R  AI  A+     +D+++VAGKGHE  
Sbjct: 431 TNDNSRSEDPNAIASDILAGCIQPEKIQVELDRKCAIAKAVADATPKDIILVAGKGHEDY 490

Query: 473 HIV 475
            I+
Sbjct: 491 QII 493


>gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
 gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
          Length = 487

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/490 (31%), Positives = 239/490 (48%), Gaps = 42/490 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +P ++   ++  +S +S+ I+ G++F AI GN+ DGH FI +A    A   VV       
Sbjct: 21  YPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFIQEAFKNKAIGAVVEKDV--- 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQIC 137
           D+  TI+  + +  +  T        S ++  +P   L   +VTGT+GKS++   +    
Sbjct: 78  DYVNTIKVRSTLQALRET--------SLVFYDYPFKKLFLGSVTGTNGKSTITWILSHAV 129

Query: 138 QRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +    SF +G    + +    +    TTP    + + L       + +  +E SSH L 
Sbjct: 130 NKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQAIQLDMKYGFLEVSSHALK 189

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSK 254
             RL GI+  A  FTNL RDH+D+H + + YF  K  LF     KE+   +I  DD Y  
Sbjct: 190 LGRLHGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTSTYLKENAFVVINIDDLYGI 249

Query: 255 EVMK-----RAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +       R  +         + GKF  + + VC +   Q+V             P+ G
Sbjct: 250 NLYNGIKDFRKASFSLENEKASFFGKFEPVDRGVCLLVEGQKV-----------FAPIYG 298

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F   N L A      +GI+   + +    L    GR E V T  +  +I++DYAHT + 
Sbjct: 299 RFNASNLLGAYTFLRMMGIEKDKLGDAFVDLVAPYGRLECVQT--KPFKIWIDYAHTPDG 356

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +LK++R +   +II+VFG GG+RD+GKRPIMG+IA   +D  I+T DNPR EDP  I
Sbjct: 357 LEKVLKSLRDMVEKKIILVFGAGGNRDKGKRPIMGRIAAQFSDYTIITSDNPRYEDPMSI 416

Query: 429 RAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             EI  G        F    +R EAI+ AIE+    D +++AGKGHE    + NG K   
Sbjct: 417 IDEIKSGFLSVKNSNFEILSDRREAIKRAIEIARDNDAIIIAGKGHEDYQEI-NGVKYPF 475

Query: 484 VDCDIIREIL 493
            D ++++E++
Sbjct: 476 SDKEVVKELI 485


>gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
 gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
          Length = 556

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 161/510 (31%), Positives = 253/510 (49%), Gaps = 69/510 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N +S DSR I  G +FVA+ G    G +FIP AI +GA AI+  SA +  D     R  
Sbjct: 35  VNHLSIDSRAISKGDVFVALQGVSVHGEVFIPAAIKKGAVAIL--SATTASDVFVEYRDE 92

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P++ + +  ++LS  A   Y  HP     ++ +TGT+GK+S A    Q+   +G +   
Sbjct: 93  IPVIFIPHLEQYLSEIAGNFY-HHPTKKVPVIGITGTNGKTSCAQIYAQLSAFNGSAVGV 151

Query: 147 IGPT---------------------------STISSFAQDNR--------------LTTP 165
           IG                             S+ +S A  +R              +TTP
Sbjct: 152 IGTMGYGACRPHVSHKNSQDKDFQDKGFQDKSSQNSHASQSRAGQPGYSLSLVSTGMTTP 211

Query: 166 SPIY-------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
             I        L  + +  ++ G+  V +E SSHGL+Q R+  + + +  FTNL  DH+D
Sbjct: 212 DAIAAQFICDELLHSNNASNTLGLESVVMEVSSHGLEQGRVSALDINSAIFTNLTHDHLD 271

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKF 276
           YH    AY NAK +LFE  +P  + AI+  DD +S E+  +  +   RV+S  +      
Sbjct: 272 YHGDMVAYGNAKAKLFE--MPTINLAIVNLDDEFSHELTTKIAST-VRVISYSIDNANAD 328

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           ++L  +   H++    +    + +    PL G F + N L+A     +   + + V+   
Sbjct: 329 LYLDNIRYGHSQLLADLYCNNEIYALSTPLIGRFNLSN-LLAVLSVFSQQQNFSQVVASA 387

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           + L  + GR E V  N  G ++ VD+AHT ++L+ +L+ +     G +  VFGCGGDRDQ
Sbjct: 388 QYLQPISGRMESV-ENQEGIQVVVDFAHTPDALDNVLQAVSEYVDGEVYCVFGCGGDRDQ 446

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452
            KRP+M  +A   AD  +VT+DNPRSE+P  I  +++ G        IE+  R EAIR A
Sbjct: 447 SKRPLMAAVAERYADHVVVTNDNPRSENPTDIAQQVVQGFSSNNHCVIEE--REEAIRFA 504

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           I      D++V+AGKGHE+  ++  G++K+
Sbjct: 505 IHHAKIGDMVVIAGKGHESYQLI--GDQKI 532


>gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 499

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 231/468 (49%), Gaps = 38/468 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 29  KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 84  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 139 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L    S      A++ ADD  S E 
Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 257

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +       +  +S    + +    L G F VYNA
Sbjct: 258 FKKITSA--EVITYGIHNGADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 316 LAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTLDALENVLST 374

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNP SEDP+ I  +I   
Sbjct: 375 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPCSEDPQAIMKDI--- 431

Query: 436 IPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             GF++  N        R  AI  AI M +  D++++AGKGHET  I+
Sbjct: 432 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 479


>gi|85058422|ref|YP_454124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
 gi|123520084|sp|Q2NVV6|MURE_SODGM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|84778942|dbj|BAE73719.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
          Length = 495

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 169/496 (34%), Positives = 249/496 (50%), Gaps = 48/496 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+ G++ DG  +IPQAIAQG  A+V  +    ++      
Sbjct: 20  RVLREMTLDSRTAAAGDLFVAVAGHQTDGRRYIPQAIAQGVAAVVAQAEGEAEEGEIREL 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +   ++ LS  A R Y + P + L +TG +G +   +    + Q + L    +
Sbjct: 80  HGVPVIYLHRLQERLSALAGRFY-QQPLHALRLTGVTGTNGKTTTTHLLAQWAQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G TS +     +  L        TT SPI + + L  L  QG T  ++E SSHGL QHR+
Sbjct: 135 GETSAVMGTVGNGVLGHIHPADNTTGSPIEVQQLLLQLQRQGATFAAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH     Y  AK RLF EL   +   II ADDA  +  +++
Sbjct: 195 SILHFAAAVFTNLSRDHLDYHGDMAQYEAAKWRLFGELDVGQR--IINADDATGRRWLQK 252

Query: 260 AHNAGCRVLSVGYQGKFIHLKK---VCAIHNKQQVTISVEGKDFDFL---------FPLP 307
              A    ++V   G     ++   +CA     +V     G D  F            L 
Sbjct: 253 LPQA----IAVAVSGTLPPERQGDWLCA----GEVRYHARGADIPFRSSWGEGIVHCQLI 304

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF V N L+A    +A+G     +L+   +L  + GR E      R   + VDYAHT +
Sbjct: 305 GEFNVSNLLLALTTLLALGYPLPALLDSASRLQSICGRMEVFHAEDRP-TVLVDYAHTPD 363

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L   R    G++  VFGCGGDRD+GKRP+MG IA   AD  I+TDDNPR E  + 
Sbjct: 364 ALEKALTAARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQYADRVIITDDNPRGEAAQD 423

Query: 428 IRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           I  +I  G+   ++ G       R EA+ +AI      D+++VAGKGHE   I+  G+++
Sbjct: 424 IINDIKSGL---LDAGRAQVISGRAEAVTSAIMQAAPADLVLVAGKGHEDYQII--GKQR 478

Query: 482 MSV-DCDIIREILGLI 496
           +   D   +  +LG++
Sbjct: 479 LDYSDRTTVARLLGVM 494


>gi|146310295|ref|YP_001175369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter sp. 638]
 gi|167017293|sp|A4W6I8|MURE_ENT38 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145317171|gb|ABP59318.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter sp. 638]
          Length = 495

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 235/466 (50%), Gaps = 29/466 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E+  DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDDATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ +    + LS  A R Y   P + L + G +G +   +  Q + Q + L    +
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFY-HEPSDQLRLVGVTGTNGKTTTTQLMAQWAQL----L 134

Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G T  +     +  L        TT S + +   LS L+ QG T  ++E SSHGL QHR+
Sbjct: 135 GETGAVMGTVGNGLLGKVNPTENTTGSAVDVQHVLSGLAGQGATFAAMEVSSHGLVQHRV 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K  A  FTNL RDH+DYH   + Y  AK  L+      +  AII ADD   +  + +
Sbjct: 195 SALKFAASVFTNLSRDHLDYHGDMENYEAAKWLLYSTHHCGQ--AIINADDEVGRRWLAK 252

Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +A    +    +    G+++    V    +   +  +    + +    L G F V N 
Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVDYHDSGATIRFASSWGEGEIESRLMGAFNVSNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A    +A+    + ++    +L  V GR E V T      + VDYAHT ++LE  L+ 
Sbjct: 313 LLALATLLALDYPLSELVNTGARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+P  I  +I   
Sbjct: 372 ARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDI--- 428

Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + G ++ G+      R EA+  AI    + DV+++AGKGHE   IV
Sbjct: 429 LAGMMDAGHARVVEGRAEAVTNAIMQAKENDVVLLAGKGHEDYQIV 474


>gi|331091589|ref|ZP_08340425.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403616|gb|EGG83172.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 494

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 159/485 (32%), Positives = 246/485 (50%), Gaps = 40/485 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I +V+ DSR ++   +FV I G+  DG L++ +A+ +GA AI       L D    +
Sbjct: 20  EPDIEKVTHDSREVERDTLFVCIKGSATDGALYVGEAVEKGAVAI-------LADRRIEV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRSGLS 143
                 ++V+N R+ L+  AS  YG+ P   + V G +G       A  +  I ++SG  
Sbjct: 73  PREVTFILVENVRETLAKIASVFYGE-PSKEMTVIGITGTKGKTTTAYMIYHILEQSG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            +++G   TI     + R+    T+P  + + + L  +  Q      +E SS GL  HR 
Sbjct: 130 -YKVGLIGTIEIRIGEKRIPAKNTSPESVNIQRFLKEMVLQKCDIAVMEVSSQGLKLHRT 188

Query: 200 DGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           D I+   G FTNLG+DHI    H+  + Y N K +LF     +    I   D  Y +E+ 
Sbjct: 189 DEIQFDIGVFTNLGKDHIGKFEHKDFEEYKNCKAKLF----SQSDFGIANMDSPYWREMF 244

Query: 258 KRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVY 313
            RA+   C V +VG+  +   +   + V     +  +   + GKD  D +  + G F +Y
Sbjct: 245 LRAN---CDVETVGFSKEADYYASDEVVTRKSGRLGIRYRLNGKDRGDIVLSMAGRFNIY 301

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L A  +C  +G+    + + L K  V  GR E + TN +G  I +DYAH + SL+ IL
Sbjct: 302 NSLCAIAVCRRLGVSFENIRQSLCKTQV-KGRVEQISTN-KGTIILIDYAHNAMSLQSIL 359

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + + +    RII +FGCGG+R + +R  MGK++  LAD  I+T DNPR E+P +I +EI 
Sbjct: 360 EMVHSYRPHRIICIFGCGGNRAKERRYEMGKVSGALADFTIITSDNPRYENPLQIMSEIR 419

Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS---VDC 486
            G+      ++E  NR EAIR  I+     D++V+AGKGHE    +      M+   V C
Sbjct: 420 EGVEDGNGNYLEICNREEAIRYGIKYAGAADIIVIAGKGHEEYQEIEGIRYHMTDREVVC 479

Query: 487 DIIRE 491
            II E
Sbjct: 480 HIIDE 484


>gi|283477245|emb|CAY73156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae DSM 12163]
          Length = 495

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 158/486 (32%), Positives = 237/486 (48%), Gaps = 30/486 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +  +FVAI G+  DG  FIPQAIAQG  A++  +    +D     
Sbjct: 19  ERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIVE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y + P   L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLAQLSQRLSALAGRFY-QQPGEKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G T  +     +           TT S + +   L+ L  +G +  ++E SSHGL QHR
Sbjct: 134 LGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A +FTNL RDH+DYH     Y  AK  LF E   +   AII ADD   +  ++
Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINADDEVGRRWLE 251

Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A        L  G  G+++   KV       +V  S    + +    L G F V N
Sbjct: 252 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +++      +     +L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSEDP  I  +I+ 
Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAIVRDILS 430

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           G+   ++ G       R +A+   +    + D+++VAGKGHE   I+ +     S D D 
Sbjct: 431 GL---LDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-DRDT 486

Query: 489 IREILG 494
           +  +LG
Sbjct: 487 VARLLG 492


>gi|259907412|ref|YP_002647768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
 gi|224963034|emb|CAX54517.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
          Length = 490

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 158/486 (32%), Positives = 237/486 (48%), Gaps = 30/486 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +  +FVAI G+  DG  FIPQAIAQG  A++  +    +D     
Sbjct: 14  ERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIVE 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R Y + P   L + G +G +   +  Q + Q + L    
Sbjct: 74  MHGVPVIYLAQLSQRLSALAGRFY-QQPGEKLKLIGVTGTNGKTTTTQLLAQWAQL---- 128

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G T  +     +           TT S + +   L+ L  +G +  ++E SSHGL QHR
Sbjct: 129 LGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSHGLVQHR 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A +FTNL RDH+DYH     Y  AK  LF E   +   AII ADD   +  ++
Sbjct: 189 VAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINADDEVGRRWLE 246

Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A        L  G  G+++   KV       +V  S    + +    L G F V N
Sbjct: 247 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMGAFNVSN 306

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +++      +     +L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 307 LLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 365

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSEDP  I  +I+ 
Sbjct: 366 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAIVRDILS 425

Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           G+   ++ G       R +A+   +    + D+++VAGKGHE   I+ +     S D D 
Sbjct: 426 GL---LDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-DRDT 481

Query: 489 IREILG 494
           +  +LG
Sbjct: 482 VARLLG 487


>gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 242/477 (50%), Gaps = 29/477 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTP 91
           V+ D+  +  G +F A+ G+   G   +  A+A+GA A++V   A +L         +  
Sbjct: 28  VTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAVAVLVDQQAPTLP----AAMGDVC 83

Query: 92  ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V + RK  ++ ASR +G+     +++A+TGT+GK+SV+   + + + +     ++G 
Sbjct: 84  VLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGKTSVSYMTESVLRLA--ERARVGV 141

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             T  S   D       + L+TP    L   L ++  +    V +EA+S GL  HRLD  
Sbjct: 142 IGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRACGSVVLEATSMGLLTHRLDRT 201

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +  G FTNL +DH+D H T + Y +AK+RLF+ L  +   A++ ADD     + K    
Sbjct: 202 FIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR---AVVNADDPVGAGIRKLMPG 258

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           A   V +    G   +      +  +  + T+  +G+ +    P PG F V NAL     
Sbjct: 259 A---VTTYALDGDADYRASDLTVDASGSRFTLHHDGRKYPAAIPSPGRFSVSNALATVAA 315

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C  +G   A ++  LE++  +PGRFE +   S G  + VDYAH+ +SL  +L  IR    
Sbjct: 316 CHLLGHGLAGLVHALERMPQIPGRFERLQI-SGGTSVIVDYAHSPDSLNKVLTTIRGFAR 374

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----P 437
           GR+I VFGCGGDRD  KR  MG IA   +D+ ++T DNPR EDPE I  +I  GI     
Sbjct: 375 GRVITVFGCGGDRDTTKRADMGAIAGTHSDVCVLTSDNPRYEDPEGILDQIAKGIVSTGT 434

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            F    +R  AI  A+      D++++AGKG E  H    GE     D   +RE++G
Sbjct: 435 PFERLTDRRSAIAAALAEAGPDDIVLIAGKGSEP-HQSVRGELLPFSDMATVRELIG 490


>gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
          Length = 492

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 231/478 (48%), Gaps = 58/478 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  EITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----MPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 132 HTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L        +  A++ ADD  S E 
Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFHEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDP-SVEY 250

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFL---------- 303
            K+  +A   V++ G             IHN+  V    I++  K   FL          
Sbjct: 251 FKKITSA--EVITYG-------------IHNRADVQAKNITLSPKGIRFLVSSFNGEIEV 295

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F VYNAL A  + +  GI    + + L  L  + GR E +  N +   + VDY
Sbjct: 296 NLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDY 354

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRS
Sbjct: 355 AHTPDALENVLSTISEFSKGKVITVFGCGGDRDTKKRSIMGGIAGSYSDFVFITSDNPRS 414

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           EDP+ I  +I  G         ++E     AI  AI M +  D++++AGKGHET  I+
Sbjct: 415 EDPQAIMKDIEKGFSQNNNLNYKVEVDRELAITHAINMASSNDIVLIAGKGHETYQIL 472


>gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcus flavefaciens FD-1]
          Length = 479

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 161/516 (31%), Positives = 249/516 (48%), Gaps = 59/516 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+  +    +  +          +I  ++ D+R +  G +FV + G   DGH   
Sbjct: 1   MKLYDLLENNAETKLGNI----------EITSITDDTRKVAEGCLFVCVKGGSFDGHTAA 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117
            + + +GA A+V      L D           ++ DN+R+   +  S  +G HPE   ++
Sbjct: 51  AEMLEKGAAAVVCEHDLGLGDRQ---------ILTDNSRRLYGMMCSAWFG-HPEKKLHM 100

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK+++ + ++ I  ++G    + G   TI +   D  +    TTP    L   
Sbjct: 101 IGVTGTNGKTTITNVIKHILMKNG---HKTGLVGTIQNEIGDEIVHTENTTPMAYDLMAL 157

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  +   G  +V +E SS GL Q+R+         FTNL +DH+DYH+  + Y+ AK  L
Sbjct: 158 LDRMVKAGCEYVVMEVSSFGLVQNRIGASWFDTAVFTNLTQDHLDYHKDMEDYYQAKKML 217

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+        A++  DD Y K +       GC   S   +G        CA +    + I
Sbjct: 218 FDIC----DCALVNIDDEYGKRLYGEI---GCEKQSFSVKG--------CADYTADGIKI 262

Query: 294 SVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              G  F F            +PG F V N   A  +C+  G+    ++  +E+ + V G
Sbjct: 263 KSTGSSFWFCKGGKSHLVKCRMPGAFNVSNITAAMAVCLRAGLSVDDIIAAVEEYNGVKG 322

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E + T  R   +  DYAHT ++LE IL+++R  T  R+I +FGCGG+RD  KRP M  
Sbjct: 323 RCEVIPT-GRDFTVICDYAHTPDALENILRSVREYTDNRLICLFGCGGNRDAAKRPKMAA 381

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460
            A   AD  IVT DNPR+EDPE I  EI+ G+      +    +R EAI  A+++  K D
Sbjct: 382 AAAKFADRLIVTSDNPRNEDPELIIKEILTGLEDSDIPYDVVVDRREAIYHALKIAEKGD 441

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           ++V+AGKGHE   I+   E     + +I+ E L L+
Sbjct: 442 IIVLAGKGHEDYQILAGMEHIHFDEREIVAEGLKLL 477


>gi|325925691|ref|ZP_08187069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
 gi|325543907|gb|EGD15312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
          Length = 491

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 150/455 (32%), Positives = 223/455 (49%), Gaps = 25/455 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++         F      
Sbjct: 17  QVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVL---------FEPPAPD 67

Query: 89  NTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
             P+    + V   R  L + A + +G+  +   ++ VTGT+GK+S    + Q     G 
Sbjct: 68  GLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 127

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D 
Sbjct: 128 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH     Y  AK +LF     K   A++  DD + + +   A 
Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDGFGRTLFA-AL 244

Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +   R + V    +    +  + +   HN     ++++G+      PL G F V N L  
Sbjct: 245 DPALRAIGVSSRAHADARVSAQALQLDHNGINFALNIQGQVHPVHSPLLGRFNVDNLLAV 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG   A+    A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+
Sbjct: 305 AGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 364

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
               R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G   
Sbjct: 365 HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFAR 424

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               I + +R  AI  AI M +  D++++AGKGHE
Sbjct: 425 PDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHE 459


>gi|312173527|emb|CBX81781.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 495

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 158/491 (32%), Positives = 238/491 (48%), Gaps = 36/491 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +G +FVAI G+  DG  FIPQAIAQG  A++  +  +  D     
Sbjct: 19  ERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGAANDGQIVE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R + + P   L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLAQLSQRLSALAGRFH-QQPGAKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G T  +     +           TT S + +   L+ L  +G +  ++E SSHGL QHR
Sbjct: 134 LGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLAAMEISSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A +FTNL RDH+DYH     Y +AK  LF E   +   AII ADD   +  ++
Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTE--HQVGQAIINADDEVGRRWLQ 251

Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A        L  G  G+++   KV        V  +    D      L G F V N
Sbjct: 252 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHIDSRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +++    + +     +L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPR E+P  I  +I+ 
Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRGEEPAAIVGDILS 430

Query: 435 G---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           G         IPG      R +A+   +    + D+++VAGKGHE   I+ +     S D
Sbjct: 431 GLLDAGRARVIPG------RAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-D 483

Query: 486 CDIIREILGLI 496
            D +  +LG++
Sbjct: 484 RDTVARLLGVL 494


>gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha275]
          Length = 492

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   + +    VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELVGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V Y   F     +  I      T S +G    F  P         L G F   N    
Sbjct: 258 LAV-YSYGFSEHADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|257058188|ref|YP_003136076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8802]
 gi|256588354|gb|ACU99240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8802]
          Length = 501

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/493 (31%), Positives = 251/493 (50%), Gaps = 19/493 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KLQDL+ K  P +     I P    +R++  + ++S   Q G +F+ + G + DG  F 
Sbjct: 2   VKLQDLLAK-VPTI---QEIPPHPSLQREVKGICTNSHACQQGDLFIGMPGTRVDGGQFW 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+  GA A +++   +   F  T   +  +++ ++     +  A+  Y    + +  +
Sbjct: 58  TSALEAGAVAAIITPEAAAH-FPPT--PDVCVIIAEDMISVSAQLATAFYNYPTQQLKMI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    +S   +  +G   T    F Q    TTP  + L + L+  
Sbjct: 115 GVTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-E 236
              G  +  +E SSH L Q R+ G +     F+NL +DH+DYH+  + YF+AK  LF  +
Sbjct: 175 VDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPD 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L K   AII  DDAY + +++          SV       +   +         T+   
Sbjct: 235 YLAKR--AIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTP 292

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
                F  PL G+F + N L A    + +G+D   V+  L +   VPGR E V  ++ + 
Sbjct: 293 QGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQVINQLPQFMGVPGRMERVQISDQQE 352

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP+MG+I+  LAD+++V
Sbjct: 353 ISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVV 412

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +I+ GIP  +      +R  AI  AI+     D +++AGKGHE  
Sbjct: 413 TSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIHQAIQQAQPGDGVLIAGKGHEDY 472

Query: 473 HIVTNGEKKMSVD 485
            I+  G +K+  D
Sbjct: 473 QIL--GTEKIHFD 483


>gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella kingae ATCC 23330]
          Length = 491

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 224/452 (49%), Gaps = 19/452 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SDSR IQ   +F+A  G   DG  +I  AI +GA A V   A    DF        P   
Sbjct: 28  SDSRKIQPNDVFIACQGEYADGRNYIQSAIEKGA-AFVYWDADG--DFVWNENWQIPNQP 84

Query: 95  VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQ---ICQRSGLSSFQIGP 149
           +   R+   + A+ +YG      NI+ VTGT+GK+S+  ++ Q   I +     +  IG 
Sbjct: 85  IAELRQRAGILANSVYGNVSGSLNIIGVTGTNGKTSITQWLAQAIDILENKSACAI-IGT 143

Query: 150 TSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                  A Q+   TTP P+ +   L      G +H+++E SSHGL Q R++G+      
Sbjct: 144 VGNGYWGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFRVNGVPFQTAI 203

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH + + Y  AK RLF         AII +DD +  +++     +   V 
Sbjct: 204 FTNLTRDHLDYHNSMEEYGEAKARLFH--WQGLQNAIINSDDEFGAKLVAELKQSSLHVY 261

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           S G+  +   +K    + N Q + I ++    +      L G F   N   A G   A G
Sbjct: 262 SYGFN-EHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNFAAALGALCAEG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRI 384
                 L+ L ++    GR + +   ++   + VDYAHT ++LE  L  +R I     ++
Sbjct: 321 YAFQAALKALAQIRAATGRMDCIIRENK-PLVVVDYAHTPDALEKALSTLREIQQPESQL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKG 443
             VFGCGG+RD+GKRP+MG +A   AD  +VT DNPR EDP  I A+I+  +P   + + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAVAAQGADKVVVTSDNPRMEDPNAIIADILPTVPNAALVQV 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +R  AI   I     QD++++AGKGHET   V
Sbjct: 440 DRQTAIEQTIAQAAPQDIVLIAGKGHETYQDV 471


>gi|166710648|ref|ZP_02241855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 495

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 219/454 (48%), Gaps = 23/454 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +  DSR +  G  FVAI G    G  F+ QA A GA A++         F      
Sbjct: 21  QVSGLVMDSRTVALGDAFVAIAGFGAHGLGFVEQARANGATAVL---------FEPPAPD 71

Query: 89  NTPILV----VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGL 142
             P+ V    V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G 
Sbjct: 72  GLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D 
Sbjct: 132 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH     Y  AK +LF     K   A++  DD + + +     
Sbjct: 192 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDGFGRTLFASLD 249

Query: 262 NA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  V S  +    +  + +   HN     +++ G+      PL G F V N L  A
Sbjct: 250 PVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGEVHPVHSPLLGRFNVDNLLAVA 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G   A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+ 
Sbjct: 310 GALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSH 369

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G    
Sbjct: 370 AQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARP 429

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
              I + +R  AI  AI M +  D++++AGKGHE
Sbjct: 430 DAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHE 463


>gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
 gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
          Length = 477

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 162/517 (31%), Positives = 248/517 (47%), Gaps = 65/517 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLF 59
           MKL +LI KD  E     +  P    + +I  ++SD+R  +  G IFV I G   DGH  
Sbjct: 1   MKLYELI-KDVAE-----TSLP----DMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDA 50

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116
             Q + +G  A+V      L+            ++V +TR    +  S  +G HPE    
Sbjct: 51  AQQMLDKGCAAVVCERDLGLE----------RQIIVTDTRAAFPMLCSAWFG-HPERELE 99

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+++ + ++++    G   F++G   T  +   D  +    TTP P  L +
Sbjct: 100 LIGVTGTNGKTTITTVIKKVLSGFG---FKVGLIGTCQNEIGDKIIPTARTTPEPYDLFE 156

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
               ++ +G  +  +E SS GL+Q R+ G    AG FTNL +DH+D H T + Y+ AK  
Sbjct: 157 LFRKMADEGCKYTVMEVSSQGLEQKRVQGCHFKAGIFTNLTQDHLDVHGTMENYYQAKKM 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF+        AII  DD Y +  +       C   +    GK        A    + V 
Sbjct: 217 LFDIC----DTAIINTDDEYGRRYVTEIP---CPYKTYSVNGK--------ADFRAEDVM 261

Query: 293 ISVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +   G  + F          F +PG F V N+L        +G      ++  EK+  V 
Sbjct: 262 LGTTGVKYVFCDGKVKKNVSFNMPGLFNVSNSLAVIACMEVLGFTPCNTIKEFEKIQGVR 321

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E + T  R   +  DYAHT ++L  +L  I+  + G++  +FGCGG+RD+ KR  M 
Sbjct: 322 GRAEIIPT-GRDFTVICDYAHTPDALINVLSAIKEGSKGKVKCLFGCGGNRDRTKRAPMA 380

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ 459
             A + AD  IVT DNPR EDP+ I  +++ G+ G    ++   +R EAI  AI+   K 
Sbjct: 381 AAAAEHADFLIVTSDNPRDEDPDDIINDVLKGLEGKDTPYVRMTDRREAIHWAIKNAEKD 440

Query: 460 DVLVVAGKGHETVHIVTNGEK----KMSVDCDIIREI 492
           D++V+AGKGHE   I+  G K    +  V  D ++EI
Sbjct: 441 DIIVLAGKGHEDYQILAGGVKIHFDEREVVADALKEI 477


>gi|117928213|ref|YP_872764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648676|gb|ABK52778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
          Length = 522

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 232/471 (49%), Gaps = 46/471 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR +Q G +F A+ G    G  ++  A+  GA A++   A +     + I   
Sbjct: 39  ICGVTHDSRRVQPGDLFAALPGAHTHGARYVADAVTAGAVAVLTDPAGA-----SLINRE 93

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+  + RK L   A+ +YG HP      L VTGT+GK++   F+    + +G  +  
Sbjct: 94  VPLLICADPRKTLGPVAAAIYG-HPARALVTLGVTGTNGKTTTVFFLDAGLRAAGHRTGL 152

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   T +      +  TTP    +   L+ +   G+T  ++E SSH L  HR+DG    
Sbjct: 153 LGTVMTRLGERTVPSARTTPEAPDIQALLARMRDDGITAAAMEVSSHALALHRVDGTGFA 212

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              FTNL  DH+D+H   + YF AK RLF  +  PK   A+I  DD Y + +   A  A 
Sbjct: 213 CVGFTNLSHDHLDFHGDMENYFAAKARLFRPDFAPK---AVIVVDDEYGRRLADTAPIA- 268

Query: 265 CRVLSVGYQGKFIHLKK----------------VCAIHNKQQV-TISVEGKDFDFLFPLP 307
            R +S    G+  HL                  V       QV T++    + +    LP
Sbjct: 269 VRTVS----GRPEHLPPDRRPDWRVVAVRAAAAVSPTRPAGQVATVAGPIGEVELSLQLP 324

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + NAL+A  + + +GI        +  L  VPGR E V        + VDYAHT  
Sbjct: 325 GRFNLTNALLALAILVEVGIPVEAARAGIGDLAGVPGRLELVDAGQPFA-VLVDYAHTPE 383

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++  + + +R    GR+I+V GCGGDRD  KRP MG  A +LAD+AI T DNPRSEDPE+
Sbjct: 384 AVATVAREVRP-DRGRLIIVIGCGGDRDPSKRPAMGAAAAELADLAIFTSDNPRSEDPEE 442

Query: 428 IRAEIIHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I A ++ G+P              +R EAI+ AI+     DV+++AGKGHE
Sbjct: 443 IVAAMLTGVPAVTADRRAEIRVELDRHEAIKDAIQAARPGDVVLIAGKGHE 493


>gi|303228427|ref|ZP_07315260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|303230769|ref|ZP_07317516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514529|gb|EFL56524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302516929|gb|EFL58838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 494

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 150/489 (30%), Positives = 242/489 (49%), Gaps = 34/489 (6%)

Query: 9   KDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ++I+ L +  +Q  +   I ++++DSR ++   +F+A+ G   DGH +I +A+A G
Sbjct: 2   KTLKDIISTLDVQQVQGNQNVSIQDITADSRAVKPNSLFIALDGATVDGHNYIDKAVAAG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++VS          T+ ++  ++ V +TR+ +       +  +P N + + G +G +
Sbjct: 62  AVAVIVSKP-------VTVPNDVCVITVSDTRQAMMACVPYFF-DYPANRMRMVGVTGTN 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
              +    I         ++G   T+     D       TTP  + L   L  +  + V 
Sbjct: 114 GKTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVQENVE 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++      
Sbjct: 174 YCVMEVSSHALALGRVSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQE 233

Query: 244 -----AIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD+Y   VM++         ++G        +H+          Q T++ 
Sbjct: 234 KDNKGAVINIDDSYGHRVMEKTTAPTITYSTLGKGTLNASDVHMST-----KNSQYTVNY 288

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G+ +       G F VYN L A G C+  GI    +   L+    VPGRFE +    + 
Sbjct: 289 KGESYPVSMNTTGLFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELI-EEGQD 347

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + L+ IL+  + I   RII+VFGCGGDRD  KRPIMG+IA +  D   V
Sbjct: 348 FAVVVDYAHTPDGLQNILETAKAIKENRIIIVFGCGGDRDATKRPIMGRIAAEYGDKIYV 407

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKG 468
           T DNPR+EDP +I  ++  G+   +  G       +R EAI  AI      D++++AGKG
Sbjct: 408 TSDNPRTEDPVQIVKDVEVGVKEALRDGTSYEVIVDRREAINHAIHDAKAGDIVIIAGKG 467

Query: 469 HETVHIVTN 477
           HE   I+ N
Sbjct: 468 HENYQILKN 476


>gi|296394969|ref|YP_003659853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
 gi|296182116|gb|ADG99022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
          Length = 506

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 238/483 (49%), Gaps = 40/483 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+  ++ ++ G +FVA+ G +  G  FI  A  +GA A++   A       A    
Sbjct: 34  RVRGVAQAAQSVEPGDLFVALPGARTHGANFISVAQERGAAAVLTDEA------GAACLG 87

Query: 89  NT---PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLS 143
            T    +LV    R  L    + +YG     +  V  T       +   ++ + + +G +
Sbjct: 88  GTDAMAVLVAAAPRASLGALCALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFRAAGRA 147

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG   T I S +  +  TTP        L+ ++  GV  V +E SSH LD  R+DG 
Sbjct: 148 TGVIGTVETRIGSQSVASSFTTPEAPQTQSLLAVMAEAGVEVVLMEVSSHALDFGRVDGT 207

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES----PAIIYADDAYSKEVMK 258
           +  AG FTNL  DH+D+H   ++YF AK +LF+   P  S     A+I  DD++ +  M 
Sbjct: 208 RFAAGGFTNLSHDHLDHHGDMESYFQAKAKLFQ---PGSSVAARRAVICVDDSWGQR-MS 263

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALV 317
           R       V +      +  L++       QQV +     + F F   L G     NA++
Sbjct: 264 RVARGSVTVATGDEAADWAVLERREDELGAQQVLVRGPRERQFAFRLGLLGRHNAANAVL 323

Query: 318 AAGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIY---VDYAHTSNSLEM 371
           A GL  A G+    V E L +      VPGR E V    + G+ +   VDYAH   SL  
Sbjct: 324 AVGLAEATGVR---VTEELVRGWADIAVPGRLERV----QAGQDFLAVVDYAHKPESLAK 376

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ +R  T+GRI VV G GGDRDQGKRP+MG+++   A++ +VTDDNPRSEDP  IRA+
Sbjct: 377 VLQALREHTAGRIAVVVGAGGDRDQGKRPMMGEVSASGAELVVVTDDNPRSEDPAAIRAQ 436

Query: 432 IIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++ G  G       E  +R EAI  A+      D ++VAGKGHET   V NG K    D 
Sbjct: 437 VLAGAQGSSRAEVWEVASRAEAIARAVRWARAGDTVLVAGKGHETYQEV-NGVKSHFDDR 495

Query: 487 DII 489
           +I+
Sbjct: 496 EIL 498


>gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 493

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/465 (31%), Positives = 230/465 (49%), Gaps = 32/465 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I +G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  EITGLEMDSRKITSGNLFICVSGINGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  Y  +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----IPKIIVKDARYAMAVIASHFY-DYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q V +  +E +S GL   R+ G
Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNVDYCVMEVTSQGLHMERVKG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L        +  A++ ADD  S E 
Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDP-SVEY 250

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G   +  +  K +       +  +S    + +    L G F VYNA
Sbjct: 251 FKKITSA--EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 309 LAAITVALVEGIPLTNISDSLSTLKRIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I  G
Sbjct: 368 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAITKDIEKG 427

Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                    ++E     AI  AI M +  D++++AGKGHET  I+
Sbjct: 428 FSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 472


>gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 484

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 150/485 (30%), Positives = 248/485 (51%), Gaps = 41/485 (8%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +KL+D+++     E++ QL +        ++  +  DSR    G +FVA+ G   DGHLF
Sbjct: 2   IKLKDILHAIPVQEVVGQLDV--------EVTSLCFDSRQANEGSLFVAVRGVHTDGHLF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           + +AI QG   I+V      ++  A        ++V +T   L + A   YG       +
Sbjct: 54  VEKAIQQGCTLIMV------EEMPAEKSEGVTYMMVADTAYALGIAAGNFYGNPSRELKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK+++A+ +  +    G   + +G  ST+ +   +  +    TTP P+ L   
Sbjct: 108 VGVTGTNGKTTIATLLFNLFTALG---YHVGLLSTVQNQIGERIIPATHTTPDPVALNAL 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  +  +G  +  +E SSH + Q R+ G++   G F+N+  DH+D+H+T   Y  AK + 
Sbjct: 165 LRDMVDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKF 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F++L  + + A+   D+     +++   N      + G +G      K+   H    + +
Sbjct: 225 FDDL-DRFAFALTNGDEKNGSVMLQ---NTFAHKKTYGLKGVADFKAKIIESHFDGML-L 279

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++EG +      L GEF  YN L   G  I +  ++  VL  L ++    GRFE +   S
Sbjct: 280 NIEGHEV--WVKLVGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAI--TS 335

Query: 354 RGGRI-YVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           + G I  VDYAHT +++  +L  I  +     +II V GCGGDRD+ KRP M ++A  ++
Sbjct: 336 KNGVIGIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMS 395

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T DNPR+EDP +I  ++  GIP   +K      +R EAIR A  +    D+++VA
Sbjct: 396 DKVIITSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVA 455

Query: 466 GKGHE 470
           GKGHE
Sbjct: 456 GKGHE 460


>gi|300858819|ref|YP_003783802.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686273|gb|ADK29195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206524|gb|ADL10866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis C231]
 gi|302331079|gb|ADL21273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276766|gb|ADO26665.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis I19]
          Length = 503

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 160/465 (34%), Positives = 239/465 (51%), Gaps = 34/465 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I E+S DS+ +  G +F A+ G +  G  +  +   Q A  +  ++   +   S   R  
Sbjct: 30  IEEISLDSQELPQGGLFAALPGTRSHGAKYAQET--QAAAILTDAAGAEILRESGDTR-- 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P LVV+N R  L   ++ +YG+  ++  I+ +TGTSGK++ +  ++     +G S   I
Sbjct: 86  -PRLVVENVRGILGTVSAEIYGRPSDSLQIIGITGTSGKTTTSYMLEAGLINAGKSVGLI 144

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G T T I+      +LTTP    L K  + + +QGVTHV +E SSH L   R+      A
Sbjct: 145 GTTGTRINGVKIPTKLTTPEAPTLQKLFAQMLTQGVTHVVMEVSSHALSLGRVSATHFAA 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES----PAIIYADDAYSKEVMKRAHN 262
             FTNL +DH+D+H T + YF AK  LF+   P  S      +I  D+ +  ++++R+  
Sbjct: 205 AGFTNLSQDHLDFHPTMEEYFEAKALLFD---PASSVHTKKTVICIDEPWGLQMLERS-- 259

Query: 263 AGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            G   LSV      Q  F+           Q+  ++ E  +     P+PG F V NA +A
Sbjct: 260 -GAEALSVSMASDTQADFVVSNLTVDAAGGQRFVVTHEDDEIAVDLPIPGAFNVANAALA 318

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNI 376
            GL  ++GID    +  L  + V PGR E V   +RG      VDYAH   ++  +L+ +
Sbjct: 319 IGLASSVGIDLDRFVAGLTAVSV-PGRMERV---NRGQDFLAIVDYAHKPAAVAAVLEAV 374

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R   +GR+ +V G GGDRD+ KR IMGK +   AD+ IVTDDNPRSEDP  IR  I+ G 
Sbjct: 375 RRQAAGRVAIVVGAGGDRDRSKRAIMGKESALRADLVIVTDDNPRSEDPALIREAILTGA 434

Query: 436 -----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                     E G+R EAI+ A+      D +++AGKGHE   ++
Sbjct: 435 QKAATTAEIREVGDRREAIKQAVAWAQPTDAVIIAGKGHEVGQLI 479


>gi|325915639|ref|ZP_08177947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538199|gb|EGD09887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 491

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 220/458 (48%), Gaps = 25/458 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+ +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++         F   
Sbjct: 14  RDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVL---------FEPP 64

Query: 86  IRSNTPI----LVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQ 138
             +  P+    + V   R  L   A + +G HP   L    VTGT+GK+S    + Q   
Sbjct: 65  APAELPVPADAIAVPGLRARLGSMADQFHG-HPSRALRMVGVTGTNGKTSTVQLLAQALT 123

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G S+  +G     +   A     TTP  +     L+ L  +G    ++E SSH LDQ 
Sbjct: 124 LLGTSTGTLGTLGVGLYGAAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVSSHALDQG 183

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+D +      FTNL RDH+DYH     Y  AK +LF         A++  DDA+ + + 
Sbjct: 184 RVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRA--GLQAAVVNLDDAFGRTLF 241

Query: 258 KRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                A     V S G  G  +    +   HN     + ++        PL G F V N 
Sbjct: 242 ASLDPALRAIGVSSRGQGGATVRADALQLDHNGISFALRIDSTVHAVHSPLLGRFNVDNL 301

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L  AG   A+    A + + L +L  + GR   +G       + VDYAHT ++LE  L +
Sbjct: 302 LAVAGALHALDHAPAQIAQVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALAS 361

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G
Sbjct: 362 LRSHAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDVIVADIVRG 421

Query: 436 IP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                  I + +R  AI  AI M +  D++++AGKGHE
Sbjct: 422 FARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHE 459


>gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein
           [UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase ( MurF);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (MurE) ] [Thiomonas sp. 3As]
          Length = 975

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 230/469 (49%), Gaps = 34/469 (7%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S+DSR +Q G +FVA  G   D   F+ QA+A    A  +  A  +Q F  T   +  IL
Sbjct: 27  SADSRSLQPGEVFVAWPGAARDPRQFVTQALAA-GAAAALVEAEGVQHFGFT---DPRIL 82

Query: 94  VVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            VD  +      A+  YG HP  +   LAVTGT+GK+S A +  Q    +G     IG  
Sbjct: 83  AVDGLKALAGPLAAAWYG-HPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTL 141

Query: 151 STISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                 A Q    TTP P+ L   L+ L  QG    ++EASS GLD+HRL G  + A +F
Sbjct: 142 GAGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAF 201

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH    AY  AK  LF  + P    A++  DD Y+  V+     A CR   
Sbjct: 202 TNLTQDHLDYHGDMAAYARAKRALF--VWPGLQHAVLDIDDPYAASVLL----ADCRSRG 255

Query: 270 VGYQ-GKFIHLKKVCA-----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +  Q    I     CA         Q++T+           P+ G F + N LV A L  
Sbjct: 256 LQVQTTALIAKTDWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLH 315

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITS- 381
             G+D A +   L  +  VPGR + +G    G  + V DYAHT ++L+  L+ +R +T+ 
Sbjct: 316 TTGLDDAAIAAALRTVRAVPGRMQMLG--GIGAPLAVIDYAHTPDALDKALQALRPVTAK 373

Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
             G++  VFG GGDRD  KRP+M +     AD  ++T DNPRSE P  I  +++ G+  P
Sbjct: 374 RKGKLWCVFGAGGDRDARKRPLMAQAVEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQP 433

Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
                IE  +R  AI   +      DV+++AGKGHE    +   ++  S
Sbjct: 434 AQALLIE--DRAAAIAQTLSHAAVHDVVLIAGKGHENTQEIAGHKQAFS 480



 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  ++ + +DSR +  G +FVA+ G + D H F+PQA A GA A++              
Sbjct: 517 EVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAAGARALLAEQGVGA------- 569

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P +   +T + L L A     +    ++AVTG++GK++V   +  I     L+++Q
Sbjct: 570 -CGLPGIEAPDTLRALGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASI-----LAAWQ 623

Query: 147 IGPTSTISSFAQDNRLTT 164
                      QD RL T
Sbjct: 624 ----------GQDRRLAT 631


>gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
 gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
          Length = 551

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 160/482 (33%), Positives = 245/482 (50%), Gaps = 43/482 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N+V+ DSR  +   +FVA  G    G  F+ +AI++GA  +V S           +  N 
Sbjct: 31  NDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGAVGVVTSQ----------VLPNC 80

Query: 91  PI--LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           P+   VV N R   +  +  LYG HP +   ++ VTGT+GK++V+   + +  +SG  + 
Sbjct: 81  PLPQCVVANPRAAYAYLSQSLYG-HPASRLRMMGVTGTNGKTTVSWMTRALMAKSGYRTG 139

Query: 146 QIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G       + A+ + LTTP    +A     + S+G TH+++E SSH LDQ R   + L
Sbjct: 140 LLGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLAMELSSHSLDQSRAAALPL 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+  DH+DYH    +Y  AK R+ + + P  + A+   D   +   +     A 
Sbjct: 200 DCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIALHINDPGAAS--LASLVPAE 257

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNA 315
           CR++  G          V A  + Q ++ S+ G  F   +          + G   + NA
Sbjct: 258 CRLIRYGV--------NVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENA 309

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A    +A  +    + E LE+   VPGR E   T      I+VDYAHT ++L   L +
Sbjct: 310 LAALAAGLAWKVPFLSMAEALEEFRPVPGRMERC-TWGEPFDIFVDYAHTPDALSRALCS 368

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R +T GR+I VFG GGDRD  KRP++G+ A   AD+AIVT DNPRSE+PEKI  +I  G
Sbjct: 369 LRGLTRGRLICVFGAGGDRDATKRPLLGRAA-SQADVAIVTSDNPRSENPEKIIQQICDG 427

Query: 436 IPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +P      + + +R  AI+ AIE     D++++AGKGHE+  I+         D  ++RE
Sbjct: 428 VPAQQVEVVIEVDRKLAIQHAIEQALPGDMILIAGKGHESEQIIGASHLPFD-DRRVVRE 486

Query: 492 IL 493
           +L
Sbjct: 487 LL 488


>gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis 053442]
 gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           053442]
          Length = 492

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V Y   F     +  I      T S +G    F  P         L G F   N    
Sbjct: 258 LAV-YSYGFSEHADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPERVEADRAAAIRYAVERAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 164/509 (32%), Positives = 251/509 (49%), Gaps = 34/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DLI        +  ++     R      V+ D+  +  G +F A+ G+   G   +
Sbjct: 1   MKLSDLIAGQ-----DHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAV 55

Query: 61  PQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117
             A+A+GA A++V   A +L         +  +L V + RK  ++ ASR +G+     ++
Sbjct: 56  APAVARGAVAVLVDQQAPTLP----AAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-------NRLTTPSPIYL 170
           +A+TGT+GK+SV+   + + + +     ++G   T  S   D       + L+TP    L
Sbjct: 112 IAITGTNGKTSVSYMTESVLRLA--ERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDL 169

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK
Sbjct: 170 QYLLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAK 229

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQ 289
           +RLF+ L      A++ ADD     + K    A   V +    G   +      +  +  
Sbjct: 230 LRLFQGLC---RCAVVNADDPVGAGIRKLMPGA---VTTYALDGDADYRASDLTVDASGS 283

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T+  +G+ +    P PG F V NAL     C  +G   A ++  LE++  +PGRFE +
Sbjct: 284 RFTLHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERL 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              S G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   
Sbjct: 344 QI-SGGTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTH 402

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +D+ ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      D++++A
Sbjct: 403 SDLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIA 462

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKG E  H    GE     D   +RE++G
Sbjct: 463 GKGSEP-HQSVRGELLPFSDMATVRELIG 490


>gi|253988589|ref|YP_003039945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780039|emb|CAQ83200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Photorhabdus asymbiotica]
          Length = 495

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 246/493 (49%), Gaps = 40/493 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  + E++ DSR   AG +FVAI G++ DG  +IPQAIAQG  A++  +       +  +
Sbjct: 19  ECALREMTLDSRKSAAGDLFVAIKGHQVDGRHYIPQAIAQGVAAVIAEAQGEADSGTVQV 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ V +    LS  A + Y  HP   L + G +G +   +  Q + Q +      
Sbjct: 79  IHGVPVVYVSDLNNKLSQLAGQFY-HHPGGQLRLIGVTGTNGKTTTTQLLAQWA----HG 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G  S +     +  L        TT S + +   L  L  +G T  ++E SSHGL Q R
Sbjct: 134 LGEISAVMGTVGNGLLGHVAPSENTTGSAVDIQLDLQQLVQKGATFAAMEVSSHGLVQGR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +      FTNL RDH+DYH   + Y  AK  LF     K+   II ADD   ++ + 
Sbjct: 194 VAALPFEVAVFTNLSRDHLDYHGDMEHYEAAKWLLFSSHNVKQQ--IINADDDVGQKWLS 251

Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEF 310
           R   A        L   +QG+++   ++   H+K  V+++ E    G   D   PL G F
Sbjct: 252 RLPQAVAVTMENRLPENWQGRWLSASEI-KYHDKG-VSVTFESSWGGGTIDS--PLMGAF 307

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L+A    +A+G     +LE    L  V GR E      +   + VDYAHT ++LE
Sbjct: 308 NVSNLLLALSTLLALGYPLKKLLETASCLEPVCGRMEVFNAPDKP-TVVVDYAHTPDALE 366

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L   R    GR+  VFGCGGDRD+GKR +MG +A   AD  I TDDNPRSE+P+ I  
Sbjct: 367 KALLAARLHCKGRLWCVFGCGGDRDKGKRSLMGSVAEQWADYVITTDDNPRSEEPQAIVD 426

Query: 431 EIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           +I   + GFI+ G       R+EA+ +AI    + DV++VAGKGHE   +V  G +++  
Sbjct: 427 DI---LTGFIDPGRAIVIHGRVEAVTSAIMQAKQDDVVLVAGKGHEDYQLV--GHRRLDY 481

Query: 485 -DCDIIREILGLI 496
            D   +  +LG+I
Sbjct: 482 SDRLTVARLLGVI 494


>gi|222053876|ref|YP_002536238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
 gi|221563165|gb|ACM19137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
          Length = 508

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 169/485 (34%), Positives = 244/485 (50%), Gaps = 57/485 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +Q G +F A+ G   DG+ FI  A+  GA A+V+    +  D  A +R       V
Sbjct: 29  DSRKVQPGGLFFALKGVASDGYAFIEVAVKAGAVAVVIEDDRTPADI-AWVR-------V 80

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTS-T 152
            + R  +SL A+  Y      +  V  T       +   ++ I ++ GL +  +G  +  
Sbjct: 81  ADGRLAMSLMAAAFYANPAAGLPVVGITGTNGKTTTTFLLESIFEKGGLPAAVLGTVNYR 140

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
               +     TTP  + L + L  L   G   + +E SSH L Q R+DG     G FTNL
Sbjct: 141 FGDLSIPAPNTTPESVDLQQTLRKLVDAGAKGIVMEVSSHALQQRRIDGCSFNVGVFTNL 200

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELL-PKESP----AIIYADDAYSKEVMKRAHNAGCRV 267
            RDH+DYH   ++Y  +K RLF ELL P E      A+I  DD Y + +   A  A C V
Sbjct: 201 TRDHLDYHLDMESYLQSKTRLFSELLVPDEKKPERHAVINTDDEYGRRI---AQAAACPV 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           ++ G       ++K   I N + V  SV G       P         L G F +YN + A
Sbjct: 258 VTYG-------IEKSADI-NAENVEFSVSGISCTLATPKGRIELRSMLVGRFNLYNIMAA 309

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG  +A+G+    + E LE    VPGR E V  N+ G  + VDYAHT ++LE +L  +  
Sbjct: 310 AGAGVALGLPLESIKEGLEHHGQVPGRLERV-ENALGVTVLVDYAHTGDALENVLLTMTE 368

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
           +  GRII +FGCGGDRD+GKRPIMG+IA   +D++I+T DNPR+E+P +I A++  GI  
Sbjct: 369 LKKGRIITLFGCGGDRDKGKRPIMGEIAGRYSDLSIITSDNPRTENPAEIMAQVREGIVR 428

Query: 437 ----------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                            GF+    R +AIR A++     D++++AGKGHE   I+  G++
Sbjct: 429 LGICEYSSYEAAIFQEKGFVSIEQRQDAIRLAVKAARPGDIVLLAGKGHEDYQII--GKE 486

Query: 481 KMSVD 485
           K   D
Sbjct: 487 KFHFD 491


>gi|326559301|gb|EGE09728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 7169]
 gi|326567256|gb|EGE17376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 12P80B1]
          Length = 520

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 151/467 (32%), Positives = 239/467 (51%), Gaps = 36/467 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + ++   DSR I     FV +  +++D    +  A  +   ++  S+A+ + +F      
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNA-NRYLMSVKDSAAFVISEFDLVGLD 98

Query: 89  ----NTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRS 140
                 PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+CQ S
Sbjct: 99  LDGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQAS 158

Query: 141 GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           G+SS  +G      +    Q    TT   +     +  ++ +GV  +++EASSHGLDQ+R
Sbjct: 159 GISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYR 217

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257
           L G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD   +  +
Sbjct: 218 LQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPAL 274

Query: 258 KRAHNAGCRVLSVGYQ-------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                A  +++    Q        K + L   C      ++ +     +   + PL G F
Sbjct: 275 FDYETADFQIIGYSQQKPNADFYAKAVRLSLDCV-----EIEVQTPQGEMTAISPLLGLF 329

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            V N L +     A+    A  L +L  +L    GR +    +S+ G   +DYAHT ++L
Sbjct: 330 NVDNLLASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDAL 387

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + +L ++R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I 
Sbjct: 388 KQVLSSLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAIL 447

Query: 430 AEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           A++  G+        I + +R  AI  A++   K D++V+AGKGHET
Sbjct: 448 ADMQKGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494


>gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA1]
 gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA1]
 gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA4]
 gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA1]
 gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA3]
 gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL067PA1]
 gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA1]
 gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA2]
 gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA1]
 gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA3]
 gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA2]
 gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA1]
 gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA2]
          Length = 499

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     +
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128

Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G   TI  F  D          +TTP    L    + ++ +G + V +E SSH L   R+
Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG      +FTNLGRDH+D+H T   YFNAK RLF   L +    +I  DD   +++++R
Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLVER 245

Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               G + ++        YQ       +  AI +     +S    +      LPGEF V 
Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +A  +  A G+    V + L    V PGR E V          VD+AHT  ++   L
Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R+ +  GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA +
Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419

Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G           I+ G R EAI  A+ M    DV+ V GKGHET
Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465


>gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 15998]
 gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 11379]
 gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
 gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
          Length = 491

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 241/481 (50%), Gaps = 37/481 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-----AYSLQDFSATIR 87
           V+ D+  +  G +F A+ G+   G   +  A+A+GA A++V         +L D  A   
Sbjct: 28  VTFDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAVAVLVDEQAPPLPRALGDVCA--- 84

Query: 88  SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                + V + RK  ++ ASR +G+     +++A+TGT+GK+SV+   + + + +     
Sbjct: 85  -----VRVPDVRKAAAVMASRYFGEPGRAMDLIAITGTNGKTSVSYMTESVLRLA--EQA 137

Query: 146 QIGPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++G   T  S   D       + L+TP    L   L ++  +    V +EA+S GL  HR
Sbjct: 138 RVGVIGTAGSRIGDELIPMPPSVLSTPESPDLQYLLGHMRDRACGSVVLEATSMGLLTHR 197

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD   +  G FTNL +DH+D H T + Y +AK+RLF+ L  +   A++ ADD     + K
Sbjct: 198 LDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR---AVVNADDPLGAGIRK 254

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               A   V +    G   +      +  +  + T+  +G+ +    P PG F V NAL 
Sbjct: 255 LMAGA---VTTYALDGDADYRASDLTVDASGSRFTLHHDGRKYPAAIPSPGRFSVSNALA 311

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
               C  +G   A +++ LE++  +PGRFE +     G  + VDYAH+ +SL  +L  IR
Sbjct: 312 TVAACHLLGHGLAGLVDALERMPQIPGRFERLQIPG-GTSVIVDYAHSPDSLNKVLTTIR 370

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               GR+I VFGCGGDRD  KR  MG IA   +D+ ++T DNPR EDPE I  +I  GI 
Sbjct: 371 GFARGRVITVFGCGGDRDTTKRAEMGAIAGTHSDLCVLTSDNPRYEDPEAILDQIAEGIA 430

Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                F    +R  AI  A+      D++++AGKG E  H    GE     D   +RE++
Sbjct: 431 STGTPFERLTDRRPAIAAALAEAGPDDIVLIAGKGSEP-HQSIRGELLPFSDMATVRELI 489

Query: 494 G 494
           G
Sbjct: 490 G 490


>gi|294627720|ref|ZP_06706302.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598072|gb|EFF42227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 491

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 221/455 (48%), Gaps = 25/455 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++         F      
Sbjct: 17  QVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVL---------FEPPAPD 67

Query: 89  NTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
             P+    + V   R  L + A + +G+  +   ++ VTGT+GK+S    + Q     G 
Sbjct: 68  GLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 127

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     +   A     TTP  +     L+ L   G   V++E SSH LDQ R+D 
Sbjct: 128 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLREDGAQAVAMEVSSHALDQGRVDA 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH     Y  AK +LF     K   A++  DDA+   +   A 
Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKA--AVVNLDDAFGHTLFA-AL 244

Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +   R + V    +    +  + +   HN     +++ G+      PL G F V N L  
Sbjct: 245 DPALRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAV 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG   A+    A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+
Sbjct: 305 AGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 364

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
               R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G   
Sbjct: 365 HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFAR 424

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               I + +R  AI  AI M +  D++++AGKGHE
Sbjct: 425 PDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHE 459


>gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA1]
          Length = 499

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     +
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128

Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G   TI  F  D          +TTP    L    + ++ +G + V +E SSH L   R+
Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG      +FTNLGRDH+D+H T   YFNAK RLF   L +    +I  DD   +++++R
Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARV--GVINVDDPRGRQLVER 245

Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               G + ++        YQ       +  AI +     +S    +      LPGEF V 
Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +A  +  A G+    V + L    V PGR E V          VD+AHT  ++   L
Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R+ +  GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA +
Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419

Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G           I+ G R EAI  A+ M    DV+ V GKGHET
Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465


>gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
 gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
          Length = 499

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 227/469 (48%), Gaps = 45/469 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR +  G IF  +VG   DGH FI Q +  G   +++    S            P 
Sbjct: 34  LKSDSRTVGPGDIFACVVGLHADGHRFIEQVLKAGVSYLLIQRPVSGLPI--------PW 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP- 149
           + V + R  +   A+ L  +  E +   AVTGT GKS+ +  V+ I Q  G+    +G  
Sbjct: 86  IQVTDVRAAMGYVAAALNEEPSEKMKMFAVTGTQGKSTTSYMVRSILQNCGVKCGLLGTI 145

Query: 150 --TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                  S   D   TTP    + + L  +   G    S+E SSHG+ Q RL G      
Sbjct: 146 VYDDGSKSVLADR--TTPEGSEIQQFLKNMVDNGCQACSMECSSHGIAQGRLSGCLYDGA 203

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL  +H+D+H T + Y+ AK  LF + L    P    A +A S+      H    R 
Sbjct: 204 VFTNLTPEHLDFHGTMENYYEAKAALFRKYL---KPGAAVAPNAASE------HG---RR 251

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALV 317
           L+  +        +  A      V + ++G +FD +F          PL G   V NAL 
Sbjct: 252 LAAEFPQAMTWALEAPARLQGANVKLDIDGSEFDLIFDGRKMGRVHIPLSGRHNVENALG 311

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           AA +C+A G D   V+  L  +  VPGR E +  ++ G R+ +DYAHT++SL+ +L+ +R
Sbjct: 312 AAAVCLAEGCDEKKVVAGLALMPQVPGRMERLNLDN-GVRVVIDYAHTADSLKALLETLR 370

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +T GR++ +FG GGDR  G R ++G+ A   AD   VT DNPR+EDP KI  +I+ GI 
Sbjct: 371 PLTEGRLVSLFGHGGDRFAGHRSLLGRAAAQKADRIFVTMDNPRTEDPLKIAEQIVAGIE 430

Query: 438 GFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                G       R  AI  A++   + D+LV++GKG E  ++  NG K
Sbjct: 431 EVRADGCWSIELPRDAAICKALDWCRRGDLLVLSGKGPEP-YLEINGVK 478


>gi|320007082|gb|ADW01932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 515

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 236/455 (51%), Gaps = 25/455 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+  +  G +F+A+ G+ E G   +  A+A+GA A+VV     +     T   +  ++ V
Sbjct: 31  DADRVVPGSLFIAVPGHLEGGPGAVAPALARGAAAVVVEDGCVVP----TAAGDVCVVQV 86

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            + R+  ++ ASR +G+     +++A+TGT+GK+SV+  V+   + S     + G   T 
Sbjct: 87  PDARRTAAVAASRYFGEPGRRMDMVAITGTNGKTSVSYMVESALRIS--EGARAGVIGTA 144

Query: 154 SSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            S   D       + L+TP    L   L Y+  +GV  V +EA+S GL  HR+D   +  
Sbjct: 145 GSRIGDELIPMPRSVLSTPESPDLQYLLGYMRDRGVGTVVLEATSMGLLTHRIDRTFIDV 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL +DH+D H T + Y +AK+RLF+ L      A++ ADD     +      A   
Sbjct: 205 GVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCEH---AVVNADDPVGARIGAMMPGA-VT 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++  +  F     + A  +  + T+  +G+ +    P PG F V NAL A   C  +G
Sbjct: 261 TYALDAEADF-RATDLTADASGTRFTLHHQGRKYPAAIPTPGRFSVSNALAAMAACHTLG 319

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D A ++  L ++  +PGRFE + T   G  + VDYAH+ +SLE +L  +R      ++ 
Sbjct: 320 HDLAGLVSALGRMPQIPGRFERL-TTVGGTSVIVDYAHSPDSLEKVLGAVRGFARSAVVT 378

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRD  KR  MG+IA   +D+ ++T DNPR+EDPE I  +++ GI        R 
Sbjct: 379 VFGCGGDRDTTKRTDMGRIAGTHSDLVVLTSDNPRTEDPEVIMDQVVPGIEATGTPYERF 438

Query: 447 EAIRTAIEM----LNKQDVLVVAGKGHETVHIVTN 477
              RTAIE         D++++AGKG E   IV +
Sbjct: 439 TDRRTAIEFALSAAGPDDIVLIAGKGSEPYQIVGD 473


>gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis FAM18]
 gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           FAM18]
          Length = 492

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   + +    VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E++ R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G +  F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A       VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANDYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|21241545|ref|NP_641127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|24212035|sp|Q8PPB2|MURE_XANAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21106896|gb|AAM35663.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 495

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 221/455 (48%), Gaps = 25/455 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++         F      
Sbjct: 21  QVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVL---------FEPPAPD 71

Query: 89  NTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
             P+    + V   R  L + A + +G+  +   ++ VTGT+GK+S    + Q     G 
Sbjct: 72  GLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     +   A     TTP  +     L+ L   G   V++E SSH LDQ R+D 
Sbjct: 132 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDDGAQAVAMEVSSHALDQGRVDA 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH     Y  AK +LF     K   A++  DDA+   +   A 
Sbjct: 192 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKA--AVVNLDDAFGHTLFA-AL 248

Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +   R + V    +    +  + +   HN     +++ G+      PL G F V N L  
Sbjct: 249 DPALRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAV 308

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG   A+    A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+
Sbjct: 309 AGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 368

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
               R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G   
Sbjct: 369 HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFAR 428

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               I + +R  AI  AI M +  D++++AGKGHE
Sbjct: 429 PDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHE 463


>gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 492

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 160/468 (34%), Positives = 242/468 (51%), Gaps = 34/468 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +FVAI G+  DG  FI +AI  GA AI+   A  L +F ++     P+ +V
Sbjct: 26  DSREVTPGDVFVAIKGHTLDGGQFIAKAIENGAIAII---ADRLCEFESSFE---PLYLV 79

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               K L   ASR Y +  +  +++ VTGT+GKS+  + +  + Q     S  IG   T+
Sbjct: 80  SELDKKLPELASRFYSQPSQTLDLIGVTGTNGKSTTTAMIAHLAQFCSTESAIIG---TL 136

Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                DN +    TTPS + L   LS L+SQ    V++E SSHGL Q R+   +  A  F
Sbjct: 137 GYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLVAMEVSSHGLVQQRVAKCQFKAAVF 196

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--HNAGC-- 265
           TNL RDH+DYH    +Y +AK+ LF +  P+    ++  DD  +++ +++   +N  C  
Sbjct: 197 TNLSRDHLDYHGDMASYGDAKLMLFRDFEPQV--VVLNQDDFQAEQWLEKYDFNNLICYG 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R        ++++   V          +S    D     PL GEF +YN   A    + +
Sbjct: 255 RKNLAPKNARYVYFSDVEYSSEGISAQLSTSWGDISIKSPLFGEFNLYNLTAALATLLGL 314

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTITSGR 383
           G     ++    +L  V GR +     S+ G     VDYAHT ++L + L+ ++    G 
Sbjct: 315 GYPLEQLVAGCAQLQPVAGRMQAF---SQAGMPTCVVDYAHTPDALALALQALQLHVPGG 371

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GF 439
           +  VFGCGGDRD+GKR +M + A   A+  I+T DNPRSE+P+ I A++  G+       
Sbjct: 372 VSCVFGCGGDRDKGKRALMAQAAEQNANKIIITSDNPRSENPDDIIADVAGGLTHPQNAH 431

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +E  +R  AIR AIE     DV+++AGKGHE   I+  G+K++   CD
Sbjct: 432 LE-ADRATAIRFAIENATADDVILIAGKGHEDYQII--GDKRIDF-CD 475


>gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
          Length = 563

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 170/540 (31%), Positives = 249/540 (46%), Gaps = 91/540 (16%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDFSA 84
           ++   S DSR +  G ++ A+ G    G  F   A+  GA A++  +A +     Q  SA
Sbjct: 32  RVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGAVAVLTDAAGAAVIRGQAGSA 91

Query: 85  -------------------TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
                                 +  P+LVVD+ R  L   A+ +YG    ++  + +TGT
Sbjct: 92  DSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQLAAAIYGDPGADLTMVGITGT 151

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++ A  ++   +  G S+  IG   T +     D+  TTP    +   L+ +  +G 
Sbjct: 152 NGKTTTAYLLESALRALGCSTGLIGTIETRVGKERLDSSHTTPEATDVHALLAVMRERGA 211

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SSH LDQHR+DG+      FTNL +DH+DYH + + YF AK RLF    P+ S
Sbjct: 212 DTCVMEVSSHALDQHRVDGVVYDVALFTNLSQDHLDYHGSMEDYFAAKARLFT---PERS 268

Query: 243 -PAIIYADDAYSKEVMKRAHNA-------------------GCRV-LSV---------GY 272
              ++  DD + + ++ RA                      G  V  SV         G 
Sbjct: 269 LSGVVCVDDEWGRRLIDRATVPVTTLTTLPTPTSEPTPTSTGAEVDWSVVPRRGAAVDGA 328

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G+  HL     +H     ++S+          LPG+F V N  +AA   +++G + A V
Sbjct: 329 SGQPFHL-----VHRSGDRSLSLASH-------LPGDFNVANTAIAAVALLSLGHEPARV 376

Query: 333 LEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
              L     VPGR E V    +   R  VD+AHT +++++ L  +R  T GR+I V G G
Sbjct: 377 EAALAVPPSVPGRMEVVAPGGTTDPRCIVDFAHTPDAIDVALAALRPSTRGRLIAVLGAG 436

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----------FI 440
           GDRD+GKR  MG+ A   ADI +VTDDNPRSEDP +IR  ++ G               I
Sbjct: 437 GDRDRGKREAMGRAAARHADIVVVTDDNPRSEDPAEIRRTVLAGARSAVTDGSAVAREII 496

Query: 441 EKGNRIEAIRTAIEML-------NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + G R  AI +AI M        +  D +VV GKGHE    V NG K    D + +R  L
Sbjct: 497 DGGARSRAISSAIAMALRGSSGSDGADTVVVLGKGHEKGQEV-NGVKHPFDDREAVRTAL 555


>gi|255320231|ref|ZP_05361416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
 gi|255302670|gb|EET81902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
          Length = 499

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 157/482 (32%), Positives = 244/482 (50%), Gaps = 57/482 (11%)

Query: 20  IFP----MQWRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVV 73
           I+P    ++W  +  +    DSR +QAG IF+A+  +   +   +F   A++QGA  I+ 
Sbjct: 8   IYPGNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSQSDKTRIFAENALSQGALGIIS 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPEN---ILAVTGTSGKSSV 129
            S   +          T   V    R+++  +  + L    P N   ILAVTGT+GK+++
Sbjct: 68  ESDLGV----------TTAWVCPQVRQWMGGWQKQYLQATRPVNSARILAVTGTNGKTTI 117

Query: 130 A-------SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +       SF +Q C   G +   I P    S+       TT   + L  AL   SSQG 
Sbjct: 118 SRLIAELISFQKQPCAVMGTTGNGILPHLVASTH------TTLDALQLQNALHDFSSQGA 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++EASSHGL+Q RL+G ++    ++NL RDH+DYH T  AY +AK  LF+       
Sbjct: 172 NFVALEASSHGLEQGRLNGCEIEIAIYSNLSRDHLDYHGTLTAYADAKALLFK--FATLR 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD Y+  +++ A     R   + Y      L+   A +    +  S++G  F  
Sbjct: 230 SAVINLDDDYAPVMLETAQANPARPKILTYS-----LQHPEADYRVSDIHYSLKGAKFKL 284

Query: 303 LFP---------LPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + P         L G+F + N LVA+ + +   G   + +L  + +L   PGR + +   
Sbjct: 285 IAPTGEYVVQSPLLGQFNIEN-LVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDA 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            R     VDYAHT ++L  +L  ++     ++  +FGCGGDRD+GKRP+M + AL+ AD 
Sbjct: 344 ER--LFVVDYAHTPDALTQVLVTLKRHVQHQLWAIFGCGGDRDRGKRPLMTQAALNDADP 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I+T DNPR+E PE+I  ++ H    G     E  +R EAI+ A++     D++V+AGKG
Sbjct: 402 VILTSDNPRTESPEQIFTDMKHEVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKG 461

Query: 469 HE 470
           HE
Sbjct: 462 HE 463


>gi|86740116|ref|YP_480516.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
 gi|86566978|gb|ABD10787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
          Length = 544

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/397 (36%), Positives = 214/397 (53%), Gaps = 32/397 (8%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LV D+ R+ L+  A+R+YG       +L VTGT+GK++ A  +    + +G ++  IG  
Sbjct: 135 LVSDDPRRDLAPVAARIYGDPSAALRLLGVTGTNGKTTTAFLLDAGLRAAGHTTGLIG-- 192

Query: 151 STISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            TI +   D RL    TTP    L   L+ +  +GV   ++E SSH L  HR D +    
Sbjct: 193 -TIETRIADERLASARTTPEASDLQALLATMVERGVGAATMEVSSHALALHRADALHFAG 251

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+D+H + + YF AK  LF+    + + A+I   D + + + +R   A   
Sbjct: 252 AVFTNLSQDHLDFHSSMEDYFAAKASLFDPA--RTAVAVIGVADRWGRRLAERHPGA--- 306

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCI 323
            ++   +G      +  + +      +  EG D    D   PLPG F V N L A  L +
Sbjct: 307 -ITFAVEGPADWTARDVS-YGPTGTLLRAEGPDGLRVDLSVPLPGAFNVANTLGALALLV 364

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTIT 380
           AIG+  A     +  L  VPGR E V      G+ +   VD+AHT +++  +L+ +R + 
Sbjct: 365 AIGVPPATAAAGIGSLPGVPGRMERV----DAGQPFLALVDFAHTPDAVTTLLETVRPLV 420

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF- 439
            GR+IVV GCGGDRD+GKRP+MG  A  LAD+AI+T+DNPRSEDP +I A+++ G+    
Sbjct: 421 KGRVIVVLGCGGDRDRGKRPLMGAAAATLADVAILTNDNPRSEDPAEILAQMLAGVTALS 480

Query: 440 -----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                + + +R  AI  A+     QD +VVAGKGHE+
Sbjct: 481 ASATVLVEPDRAAAIAAAVAEAGPQDAVVVAGKGHES 517


>gi|218245162|ref|YP_002370533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8801]
 gi|218165640|gb|ACK64377.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8801]
          Length = 501

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 156/493 (31%), Positives = 251/493 (50%), Gaps = 19/493 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KLQDL+ K  P +     I P    +R++  + ++S   Q G +F+ + G + DG  F 
Sbjct: 2   VKLQDLLAK-VPTI---QEIPPHPSLQREVKGLCTNSHACQQGDLFIGMPGTRVDGGQFW 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+  GA A +++   +   F  T   +  +++ ++     +  A+  Y    + +  +
Sbjct: 58  TSALEAGAVAAIITPEAAAH-FPPT--PDVCVIIAEDMISVSAQLATAFYNYPTQQLKMI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    +S   +  +G   T    F Q    TTP  + L + L+  
Sbjct: 115 GVTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-E 236
              G  +  +E SSH L Q R+ G +     F+NL +DH+DYH+  + YF+AK  LF  +
Sbjct: 175 VDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPD 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L K   AII  DDAY + +++          SV       +   +         T+   
Sbjct: 235 YLAKR--AIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTP 292

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
                F  PL G+F + N L A    + +G+D   ++  L +   VPGR E V  ++ + 
Sbjct: 293 QGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQIINQLPQFMGVPGRMERVQISDQQE 352

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP+MG+I+  LAD+++V
Sbjct: 353 ISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVV 412

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +I+ GIP  +      +R  AI  AI+     D +++AGKGHE  
Sbjct: 413 TSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIDQAIQQAQPGDGVLIAGKGHEDY 472

Query: 473 HIVTNGEKKMSVD 485
            I+  G +K+  D
Sbjct: 473 QIL--GTEKIHFD 483


>gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
 gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
          Length = 496

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 238/456 (52%), Gaps = 39/456 (8%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +FVA+VG  +DGH F+ +AIA GA AI+   A         + +  P+ +V+NT+   + 
Sbjct: 30  LFVAMVGAHQDGHDFVEEAIANGASAILSERA---------LPTTRPVCIVENTQSAYAQ 80

Query: 105 FASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR- 161
               L G   +   ++ VTGT+GK++V   +Q I + +G +   +G +S++      +R 
Sbjct: 81  ICQALAGDPSKRMRVIGVTGTNGKTTVCRLIQSIMETAGAT---VGMSSSLGYDNGYDRQ 137

Query: 162 ---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
               TTP+   LA  LS +   G TH  VEASS  L + RLDGI+L A + TNL +DH+D
Sbjct: 138 PWDCTTPNAAVLADLLSRMEYNGCTHAVVEASSEALSRDRLDGIELDAVAITNLRQDHLD 197

Query: 219 YHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
            H +   Y  AK ++   L  +E+  A++ ADD+   +++ +        LSV   G   
Sbjct: 198 VHGSVTNYHRAKKKILGRL--RETGFAVVNADDSACNKLLSQIETPA---LSVALHGAAE 252

Query: 278 HLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               V   H  +Q  +   G +       + G+  VYN LVAA + +  G+D   V+  L
Sbjct: 253 ITASVVERHKSEQTFLLSAGDETVPVCTRMIGDHHVYNCLVAAAVGLVYGVDLKTVVRGL 312

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E++  +PGR + +      G ++VD AHT ++L M LK +R +T GR+I V+G  G  D 
Sbjct: 313 ERVDSIPGRMQRIECGQPFG-VFVDLAHTHDALAMALKALRRVTHGRVICVYGADGLGDP 371

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-------GNRIEAI 449
            KRP++G++A   AD++++T  NP  E P     E+IH I    E+        NR  AI
Sbjct: 372 SKRPLLGRVAERGADLSLITSANPGDESP----LEVIHDILDGYERPARAHVMPNRAAAI 427

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             A+      D +++AG+G  T ++ T  E+++ +D
Sbjct: 428 EWALSEAQTGDTVLIAGRG--TPNLQTLREEELPLD 461


>gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 492

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 147/468 (31%), Positives = 230/468 (49%), Gaps = 38/468 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  KITGLEIDSRKITNGNLFICVSGINGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  Y  +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----IPKIIVKDARYAMAVIASHFY-DYPSNKMKLIGITGTNGKTTTSYLLEKIFSDYGY 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + ++   +  +E +S GL   R+ G
Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMERVKG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L       ++  A++ ADD  S E 
Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLFARLGNDLSTTEKKIAVLNADDP-SVEY 250

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +          +S    + +    L G F VYNA
Sbjct: 251 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIHFLVSSFNGEIEVSLNLVGRFNVYNA 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + +    L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 309 LAAITVAMVEGIPLTNICDSFSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I   
Sbjct: 368 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 424

Query: 436 IPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             GF++  N        R  AI  AI M +  D++++AGKGHET  I+
Sbjct: 425 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 472


>gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
 gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
          Length = 515

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 242/468 (51%), Gaps = 41/468 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR ++ G ++ A+ G++  G  F    +A    A V++ A  ++   A    +
Sbjct: 36  VTGVTLDSRAVRPGDLYAALPGSRAHGADFA-AQVADAGAAAVLTDADGVERLRAA-GVD 93

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS----VASFVQQICQRSGLS 143
            P++VV+  R  L   A+R+YG    ++  + +TGT+GK++    VAS +  + QR+GL 
Sbjct: 94  LPVIVVEAPRSVLGTIAARIYGTTDLSLTMVGITGTNGKTTTAYLVASALDALGQRTGL- 152

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              IG   T+ +   D R+    TTP    L   L+ +  +      +E SSH L QHR+
Sbjct: 153 ---IG---TVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTCVMEVSSHALSQHRV 206

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMK 258
           DG+      FTNL +DH+D+H   + YF+AK +LF    P+ S   +I  DD + + +  
Sbjct: 207 DGVLYDLSLFTNLSQDHLDFHADMEDYFSAKAQLF---TPERSTRGLICVDDIWGRRL-- 261

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            A   G  V ++   +G+              +  +   G + D    LPG+F V N  +
Sbjct: 262 -AEECGIPVTTLTTIEGQTADWVVTVDATEPARFALRGTGIELDLRSALPGDFNVANTAM 320

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRI-YVDYAHTSNSLEMI 372
           AA   + +G D+  V   +     VPGR E V     T+   G +  VDYAHT +++E  
Sbjct: 321 AAVALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSGLLAVVDYAHTPDAVEAA 380

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +R  T+GR++VV G GGDRD+GKR  MG+ A  LAD+ +VTDDNPRSEDP +IR  +
Sbjct: 381 LAALRPTTTGRLVVVLGAGGDRDRGKRHGMGRAAAGLADVVVVTDDNPRSEDPAQIRTAV 440

Query: 433 IHGIPG------FIEKGNRIEAIRTAIEMLNK---QDVLVVAGKGHET 471
           + G          +E G+R +AIR  + +  +     VL V GKGHET
Sbjct: 441 VEGARSIDTTALLVEVGDRRKAIREGVRLAREGGSGSVLAVVGKGHET 488


>gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida W619]
 gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619]
          Length = 496

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 159/483 (32%), Positives = 239/483 (49%), Gaps = 38/483 (7%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +F    R+  I E++ DSR ++AG +F+A+ G K DG       I+        + AY  
Sbjct: 9   LFAHASRDPLIRELTLDSRAVRAGDLFLAVPGAKVDGR----DHISDALARGAAAVAYEQ 64

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135
           Q       ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q  
Sbjct: 65  QGTHVLPITDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124

Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             + QR GL    IG   T      Q  RLTTP PI +   L  L   G   V++E SSH
Sbjct: 125 DALGQRCGL----IGTLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSH 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L+Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DD +
Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPGLRCQVVNLDDGF 238

Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFL 303
            + +           +   R+LS   +     L    A  +    + + ++ +G +    
Sbjct: 239 GRRLAADFARRPSVDHIETRLLSYSLENSDASLYCREAKFDDDGVRAIIVTAQG-ERTLR 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F + N L A    +A+      +L+   +L    GR + +G   +   + VDYA
Sbjct: 298 SQLLGRFNLSNMLAAVATLMALDYSLDEILKVTPQLQGPVGRMQRLGGGEK-PLVVVDYA 356

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+E
Sbjct: 357 HTPDALEKVLQALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTE 416

Query: 424 DPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DP+ I  +I    PGF    +      R EAI   I      DV+V+AGKGHE    + N
Sbjct: 417 DPQAIFNDI---RPGFARPADVEFIAGRGEAIAHLIASAAASDVIVLAGKGHEDYQEI-N 472

Query: 478 GEK 480
           G++
Sbjct: 473 GQR 475


>gi|113955311|ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
 gi|123031834|sp|Q0ICH2|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
          Length = 503

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 246/485 (50%), Gaps = 34/485 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    +  I  ++ DSR +  G +F+ + G + DG  F P+A+  GA A+++ SA +   
Sbjct: 17  PQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALVDGASAVLIGSAAA--- 73

Query: 82  FSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ 135
             AT+   +S+  ++V D   ++    A+  +  HP     ++ VTGT+GK++    ++ 
Sbjct: 74  --ATLPPEQSDAVLVVPDPVARWAGELAAAFW-NHPSERIGLIGVTGTNGKTTTTHLIEH 130

Query: 136 ICQRSGLSSFQIG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +    G  S   G      P  ++++       TT     L   L+   + G    ++E 
Sbjct: 131 LSSACGRPSALFGTLLNRWPGHSVTATH-----TTAVADRLQAQLAEAYAAGAQLTAMEV 185

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIY 247
           SSH LDQHR+ G +     FTNL +DH+DYH+T  +YF AK RLF   L  +  A  ++ 
Sbjct: 186 SSHALDQHRVAGCRFSGAVFTNLTQDHLDYHETMASYFEAKARLFAPPLVADQGAQFVVN 245

Query: 248 ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD + K + +R  +   R  LS G     + +  +    +  +  +     +  F  PL
Sbjct: 246 IDDPWGKHLAERLGDRCWRSSLSEGSAHAELTMSDLVMGSSGVEGRLLSPLGEGSFQSPL 305

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYA 363
            G F V N L A G+ +  G+    +LE +     VPGR E V  + +GG    + VDYA
Sbjct: 306 LGRFNVMNLLQAVGVLLQQGLPLEALLEAISTFRGVPGRMERVVVDGKGGELPTVLVDYA 365

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + L   L   R    G++I VFGCGGDRD+GKR  M  IA +LAD  +VT DNPR+E
Sbjct: 366 HTPDGLSSALNACRPFADGKLICVFGCGGDRDRGKRSQMAAIAAELADAVVVTSDNPRTE 425

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP++I  +++ GIP         +R EAI  AI+     D++++AGKGHE   I+  G +
Sbjct: 426 DPQQILNDVVEGIPSGTALTVMLDRAEAIAGAIKDAGSHDLVLIAGKGHEDYQIL--GTQ 483

Query: 481 KMSVD 485
           K+  D
Sbjct: 484 KVHFD 488


>gi|254427286|ref|ZP_05040993.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
 gi|196193455|gb|EDX88414.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
          Length = 490

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 226/466 (48%), Gaps = 22/466 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR++  G +F+A+ G   DG  FI    +Q   A  V+     + F        P + +
Sbjct: 28  DSRNVAPGDLFLAVPGVASDGRQFI----SQAVAAGAVAVLADAETFEIQQDQAVPCVAL 83

Query: 96  DNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-T 152
               + +   A+R YG+     N++ VTGT+GK+S+  F++      G     +G     
Sbjct: 84  PELGRRVGTLAARWYGEPGAAMNVVGVTGTNGKTSITWFLRDALNALGHRCALVGTLGLG 143

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +    Q    TTP PI L   L+ +   G   V++E SSH LDQHRL    +    F+NL
Sbjct: 144 LKGDEQTTGHTTPDPITLQAGLARVRDAGADCVAMEVSSHALDQHRLGSTPVPVAVFSNL 203

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            RDH+DYH   +AY  AK  LF     K   A+I  DD  +  ++    + G R ++ G 
Sbjct: 204 SRDHLDYHGDMEAYLAAKSVLFTRDGVKL--AVINCDDPAAYSLIGCLAD-GVRCVTFGD 260

Query: 273 Q-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           Q G  +    V    +  +  ++V G       PL G F + N +  AG+    GI +A 
Sbjct: 261 QPGATVRCAAVTFTADGMRAELTVGGDPLTVTLPLFGRFNLSNVMAVAGILHGQGISTAS 320

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L  +  VPGR E V        + VDYAHT + LE  L+  R    GR+  + GCG
Sbjct: 321 LGGALAAVTAVPGRMEPV-QQPGCPTVIVDYAHTPDGLEKALQACRAHFHGRLFCIVGCG 379

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNR 445
           GDRD GKRP M  +A   AD  ++T DNPRSEDP++I  ++  G      +   +E   R
Sbjct: 380 GDRDTGKRPQMAAVAERGADRVVLTSDNPRSEDPQQIIDDMRAGLADAASVQAIVE---R 436

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            +A+   ++  +  DV+++AGKGHE    V +G +  S D D+ R+
Sbjct: 437 AQAVMDTVQAASDGDVILLAGKGHEDYQEV-DGVRYPSDDRDLARK 481


>gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
 gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
          Length = 505

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 154/467 (32%), Positives = 240/467 (51%), Gaps = 46/467 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRS 88
           +  + SDSR  Q G +F  + G KE    ++P+AI +GA+AI+     + LQ        
Sbjct: 34  VTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTERPLTGLQ-------- 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P  +V + RK  +L  S L G+   ++    VTGT+GK++V+  ++ I Q SG  +  
Sbjct: 86  -VPQCIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSSGRRTGL 144

Query: 147 IGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            G      S + +   LTTP    L++ L+ +  +  TH  +E SSH LDQ+RL GI L 
Sbjct: 145 SGTVEYHDSISSRPASLTTPDANELSQLLAEMVCRKATHAVMEVSSHALDQNRLAGIDLS 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+ +DH DYHQ    Y   K R+ +++ P E   ++  DD   +       ++  
Sbjct: 205 VGVITNVTQDHFDYHQNFGNYAACKARMIQQVKP-EGTLVLNWDDPTCRSFAAEVKSSQ- 262

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNAL 316
            +L+    G+        A    Q +  S  G +F+ LF          L G   + N L
Sbjct: 263 TLLTYAIDGQ--------ADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCL 314

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA  C+++G+  + +   +E+L  VPGR E V T  +   + +DYAHT ++L  ++++ 
Sbjct: 315 AAAAACLSLGVSLSEIALGIERLVTVPGRMERV-TCGQSFTVLIDYAHTDDALSHVIRSA 373

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           + + S R+  VFG GGDRD GKR ++G +A   AD  I+T DNPRSEDP    A+II  +
Sbjct: 374 KRLCSQRVFCVFGAGGDRDTGKRSLLG-MAASEADRVIITSDNPRSEDP----AQIIRAV 428

Query: 437 P-GFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             G + KG       +R EAI  A+    + D++++AGKGHE   I+
Sbjct: 429 AEGCLNKGVSPEQIIDRREAIHYALSEARRGDLVLIAGKGHENNQII 475


>gi|317052206|ref|YP_004113322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
 gi|316947290|gb|ADU66766.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
          Length = 464

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 163/468 (34%), Positives = 229/468 (48%), Gaps = 47/468 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    + + + +S D+R I    +F+AI G++ D HL +P+ ++ G     ++ A     
Sbjct: 13  PHPQVDVEFSRLSRDTRDISPDCLFIAIAGSQFDPHLHLPELLSSGK----IAGALCQHP 68

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139
                  NT  LV+ +  +  +  A   YG       ++ VTGT+GKSS  S+++Q+ Q 
Sbjct: 69  VDG---PNT--LVLPDLAEREATIAVAAYGNPSAALKVVGVTGTNGKSSTISYLRQVYQA 123

Query: 140 SGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            G  +  IG             L  TTP    L   L       V +V +E SSH +   
Sbjct: 124 LGHRTATIGTLGYAIDGGPSAELANTTPCATTLQHILHLCLQHHVEYVFMEVSSHAIALG 183

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ GI+     FTNL  DH+D+H T   Y   K+RLF       +PA  YA     +   
Sbjct: 184 RVQGIRFHGAIFTNLTPDHLDFHGTMDDYLQTKLRLF-------TPAPPYAIIHTRRIPR 236

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQV 312
           K     G  VLS G  G+   +        +QQV  S EG  F      +  PL G   +
Sbjct: 237 KLPPLPG--VLSFG-PGEDADIPT-----TEQQV--SPEGIRFCLQGQIYRSPLRGRGNL 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N    A  C   G +   V   +  L  + GRF  +  N R G   +DYAHT ++LE +
Sbjct: 287 ENVQAVAAFCHHEGQERQQVARAIAALRPIEGRFMPISHNGRHG--IIDYAHTPDALEQL 344

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK+ R I  GR+IVVFGCGGDRD+ KRP+MG IA +LADI IVTDDNPR+EDP+ I ++I
Sbjct: 345 LKSTREICHGRLIVVFGCGGDRDKTKRPLMGAIASELADICIVTDDNPRTEDPQHIISQI 404

Query: 433 IHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           I      ++ G       R+ AI  A E+ N  D++V+AGKGHE   I
Sbjct: 405 I----AAMDMGRTTVIHERLRAITCARELANGDDLVVIAGKGHEKYQI 448


>gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA1]
 gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA2]
 gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA1]
 gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL086PA1]
 gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA1]
 gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA2]
 gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA1]
 gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL092PA1]
          Length = 499

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     +
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128

Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G   TI  F  D          +TTP    L    + ++ +G + V +E SSH L   R+
Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLEGLFAAMAERGASDVVMEVSSHALALQRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG      +FTNLGRDH+D+H T   YFNAK RLF   L +    +I  DD   +++++R
Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLVER 245

Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               G + ++        YQ       +  AI +     +S    +      LPGEF V 
Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +A  +  A G+    V + L    V PGR E V          VD+AHT  ++   L
Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R+ +  GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA +
Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419

Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G           I+ G R EAI  A+ M    DV+ V GKGHET
Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465


>gi|81300293|ref|YP_400501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
 gi|123556803|sp|Q31N55|MURE_SYNE7 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81169174|gb|ABB57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
          Length = 497

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 163/465 (35%), Positives = 239/465 (51%), Gaps = 17/465 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRS 88
           I  + +DSR  Q G +F+ + G + DG  F P+AIA GA A++V+ +A + +  SA   +
Sbjct: 26  ITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAIAAGAVAVIVTPTALAQRPLSANPEA 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +++ D         A+  Y +  + +  + VTGT+GK++    V+     +   +  
Sbjct: 86  C--LILSDQMPVTAGAIAAAFYNQPAQTLKLIGVTGTNGKTTTTHLVEHFLNAADTKTAL 143

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   +    +++  + TTP    L   L+     G     +E SSH LDQ R++G    
Sbjct: 144 LGTLYNRWPGYSEVAQHTTPFATDLQAQLATAVDAGCQAAVMEVSSHALDQGRVNGCGFD 203

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH T +AYF AK RLF     +   A+I ADDAY + ++       C
Sbjct: 204 VAVFTNLTQDHLDYHGTMEAYFAAKARLFAPPYLRGK-AVINADDAYGQRLITMTPPGQC 262

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCI 323
              SV     F            +  TI      F F  PL G+F + N L  +AAG  +
Sbjct: 263 LTYSVVGTADFCTTDLQYGPTGVEG-TIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTL 321

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            + I++ L +  +     VPGR E V        + VDYAHT +SLE +LK  R    G 
Sbjct: 322 GLPIETMLAV--VPDFVGVPGRMERVVGQDSDPTVIVDYAHTPDSLENLLKAARPFIQGE 379

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           +I VFGCGGDRD+ KRP+MG+IA  LAD  I+T DNPR+EDP +I A+I+ GIP     +
Sbjct: 380 LICVFGCGGDRDRTKRPLMGEIAARLADRVIITSDNPRTEDPRQILADIVAGIPAASPVV 439

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            + +R  AIR AI      D +++AGKGHE   I+  G  K+  D
Sbjct: 440 VEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQIL--GTTKIHFD 482


>gi|56752479|ref|YP_173180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687438|dbj|BAD80660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
          Length = 502

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 163/465 (35%), Positives = 239/465 (51%), Gaps = 17/465 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRS 88
           I  + +DSR  Q G +F+ + G + DG  F P+AIA GA A++V+ +A + +  SA   +
Sbjct: 31  ITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAIAAGAVAVIVTPTALAQRPLSANPEA 90

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +++ D         A+  Y +  + +  + VTGT+GK++    V+     +   +  
Sbjct: 91  C--LILSDQMPVTAGAIAAAFYNQPAQTLKLIGVTGTNGKTTTTHLVEHFLNAADTKTAL 148

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   +    +++  + TTP    L   L+     G     +E SSH LDQ R++G    
Sbjct: 149 LGTLYNRWPGYSEVAQHTTPFATDLQAQLATAVDAGCQAAVMEVSSHALDQGRVNGCGFD 208

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH T +AYF AK RLF     +   A+I ADDAY + ++       C
Sbjct: 209 VAVFTNLTQDHLDYHGTMEAYFAAKARLFAPPYLRGK-AVINADDAYGQRLITMTPPGQC 267

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCI 323
              SV     F            +  TI      F F  PL G+F + N L  +AAG  +
Sbjct: 268 LTYSVVGTADFCTTDLQYGPTGVEG-TIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTL 326

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            + I++ L +  +     VPGR E V        + VDYAHT +SLE +LK  R    G 
Sbjct: 327 GLPIETMLAV--VPDFVGVPGRMERVVGQDSDPTVIVDYAHTPDSLENLLKAARPFIQGE 384

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           +I VFGCGGDRD+ KRP+MG+IA  LAD  I+T DNPR+EDP +I A+I+ GIP     +
Sbjct: 385 LICVFGCGGDRDRTKRPLMGEIAARLADRVIITSDNPRTEDPRQILADIVAGIPAASPVV 444

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            + +R  AIR AI      D +++AGKGHE   I+  G  K+  D
Sbjct: 445 VEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQIL--GTTKIHFD 487


>gi|261414980|ref|YP_003248663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371436|gb|ACX74181.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326475|gb|ADL25676.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 473

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 140/386 (36%), Positives = 212/386 (54%), Gaps = 16/386 (4%)

Query: 100 KFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISS 155
           K   L A++++ K P + L   A+TGT+GK++ A  +  + +  G  +  +G   + I  
Sbjct: 72  KAARLEAAKIFYKDPFSKLICHAITGTNGKTTSAFLMNAMLEAEGRKTALLGTIKNKIGD 131

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
            +    LTTP  + L +  S   ++G T + +EASSH L Q R+ GI+  +G F+NL +D
Sbjct: 132 KSVPASLTTPGLLDLYEFASRAVAEGCTDLVMEASSHSLHQGRVAGIRFRSGLFSNLTQD 191

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+DYH+T  AYF AK  LF + L +   A+I  DDA+ +++    +   CR ++V   GK
Sbjct: 192 HLDYHKTMDAYFEAKKLLFTKYLAENGVAVINIDDAHGEKLF---NALDCRKVAVSRLGK 248

Query: 276 ----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    ++ +  +  + T+ +   D  F  PL G+F V N L+      A+ +    
Sbjct: 249 AKADVKPFGEIKSTEDGLEFTLPMIATD-KFETPLCGDFNVDNLLLVLAWAHALCVPEDA 307

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + +  + V PGRFE V +   G  + VDYAHT ++LE +L   R++  G++  VFGCG
Sbjct: 308 MRKAITTVRV-PGRFEKVWSKD-GKHVIVDYAHTPDALERVLNVARSLCRGKLSTVFGCG 365

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAI 449
           GDRD+ KRPIMG IA  +AD A +T DNPR+E P  I A++  G+    F    NR EAI
Sbjct: 366 GDRDKTKRPIMGGIAERIADKAWLTSDNPRTEKPADIIADVRAGMTTDKFEVVENREEAI 425

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIV 475
             A   L   D LV+AGKGHE   I+
Sbjct: 426 NRACAELKSGDWLVIAGKGHEDYQII 451


>gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           frigidimarina NCIMB 400]
 gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 496

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 157/487 (32%), Positives = 245/487 (50%), Gaps = 29/487 (5%)

Query: 14  LINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+N L      +  R+ +N ++ DSR ++ G +FVA+ G+K DG  FIPQAI  GA AI+
Sbjct: 2   LLNDLLAPWFHYSGRESVNGLTLDSRDVERGGLFVALPGHKVDGRAFIPQAINAGATAIL 61

Query: 73  VSS----AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + +     + + D    ++   P++      + LS  A++ Y  + +++  + +TGT+GK
Sbjct: 62  IHTDNPDEHGIVD---RLQYTVPLVFFCQLGRQLSAVAAQFYLSNSQSLSLIGITGTNGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SV+  + QI    G  +  +G     +     D+  TT   I + + LS  +++G    
Sbjct: 119 TSVSQIIAQIVYLLGHQAAVMGTLGNGLWGQLVDSGNTTADAITVMRQLSEFAAEGAELC 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSHGL Q R++        FTNL RDH+DYH    +Y  AK RLF+   P     +
Sbjct: 179 AMEVSSHGLVQGRVEAAPFEIAVFTNLSRDHLDYHGDMDSYAAAKKRLFK--FPSIKHGV 236

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---- 301
           I  DDA   + +    +   +  S+               H+   VT ++   + D    
Sbjct: 237 INIDDAVGAKWLTELASDQNKSFSIKGNSAADFYCDAIEYHDAG-VTATLHFVEIDSEKS 295

Query: 302 ----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGG 356
                  PL G F + N + A  +    G   A +L  L  L  V GR E F   N+   
Sbjct: 296 VSVQLNSPLLGAFNLSNLVAAIAVLYLQGKPMASILAVLPLLIPVAGRMERFSSVNN--A 353

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +++E  LK +R    G +  VFGCGGDRD+GKRP+M + A   AD  ++T
Sbjct: 354 TLVVDYAHTPDAIEQALKALRLHCKGTLWCVFGCGGDRDKGKRPLMAQAAERYADKVMIT 413

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DN RSEDP+ I  +I+ GI      + + +RIEAI   + +    D++++AGKGHET  
Sbjct: 414 SDNARSEDPQTIINDILQGISQPQKVLTRVDRIEAITHVVSLAQVNDIVLLAGKGHETYQ 473

Query: 474 IVTNGEK 480
            V  GE+
Sbjct: 474 EVA-GER 479


>gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA2]
          Length = 499

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     +
Sbjct: 72  VPIIVVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128

Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G   TI  F  D          +TTP    L    + ++ +G + V +E SSH L   R+
Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG      +FTNLGRDH+D+H T   YFNAK RLF   L +    +I  DD   +++++R
Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLVER 245

Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               G + ++        YQ       +  AI +     +S    +      LPGEF V 
Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +A  +  A G+    V + L    V PGR E V          VD+AHT  ++   L
Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R+ +  GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA +
Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419

Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G           I+ G R EAI  A+ M    DV+ V GKGHET
Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465


>gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL074PA1]
 gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA2]
 gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA1]
 gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA2]
 gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA1]
 gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA2]
 gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA1]
 gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA2]
 gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL007PA1]
 gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL056PA1]
 gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA3]
 gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA2]
 gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA1]
 gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA1]
 gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL045PA1]
 gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA2]
 gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA1]
 gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA2]
 gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA3]
 gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL078PA1]
 gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA2]
 gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA3]
 gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA1]
 gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL038PA1]
 gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA2]
 gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL097PA1]
 gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA3]
 gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA2]
 gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA2]
 gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA1]
 gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL020PA1]
 gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL099PA1]
          Length = 499

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     +
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128

Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G   TI  F  D          +TTP    L    + ++ +G + V +E SSH L   R+
Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG      +FTNLGRDH+D+H T   YFNAK RLF   L +    +I  DD   +++++R
Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLVER 245

Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               G + ++        YQ       +  AI +     +S    +      LPGEF V 
Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +A  +  A G+    V + L    V PGR E V          VD+AHT  ++   L
Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R+ +  GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA +
Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419

Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G           I+ G R EAI  A+ M    DV+ V GKGHET
Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465


>gi|262276876|ref|ZP_06054669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
 gi|262223979|gb|EEY74438.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
          Length = 460

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 242/461 (52%), Gaps = 24/461 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M+ +E       +DSR ++   +F   + N +  + F+   I +    I  S   + ++ 
Sbjct: 1   MKIKEIINRNFCTDSRLLKRNDVFFDFLSNSKKINPFLKSIIKKKPSLIFSSIKVNYRN- 59

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            + I  N   L       +LSL   +        I AVTGT+GK+SVA+F  Q+   +  
Sbjct: 60  -SVISKNIRNL-------YLSLIKKKYKKIPKN-IFAVTGTNGKTSVANFFYQLHILNKK 110

Query: 143 SSFQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
               IG   T+  F     + N LTTPS + +   L++++ + +  V +EASSHGLDQ R
Sbjct: 111 PCANIG---TLGYFYNKKRKKNNLTTPSNLDIYNFLNFINKKKIRTVILEASSHGLDQDR 167

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L+G+K     FTN  +DH+DYH++ +AY N+K++LF + L K+   +   +        K
Sbjct: 168 LNGLKFKGVVFTNFSQDHLDYHKSMKAYLNSKLKLFRQNLKKKGNIVCNDNIKKILIKNK 227

Query: 259 RAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +  +   VL   + Y  K I++KK    ++K  + ++ +   + F   L G+FQ+ N  
Sbjct: 228 ISKISFKYVLDNKIKYPVKIINVKKN---NSKTLIKLNFKNNIYTFNINLIGQFQIENLY 284

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            +  L ++ G+    + + LEK+  + GR   +   ++   I +DYAHT + L+ +L+ +
Sbjct: 285 QSIILALSSGLKIKEIFKVLEKVKPIEGRLNIIK--NKKKTICIDYAHTPDGLKKVLETL 342

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +   + ++ +VFGCGG+RD  KR  MG+IA  L +  I+T+DNPR EDP+ I  +I   +
Sbjct: 343 KNHYNKKVNIVFGCGGNRDTDKRKKMGQIANKLCNKVILTNDNPREEDPKNITKQIFKSV 402

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                  NR  AI+ AI++  +++VL++AGKGHE   I  N
Sbjct: 403 KKAEVIHNRKLAIKKAIKITKEKEVLLIAGKGHENYQIFKN 443


>gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 484

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 149/485 (30%), Positives = 248/485 (51%), Gaps = 41/485 (8%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +KL+D+++     E++ QL +        ++  +  DSR    G +FVA+ G   DGHLF
Sbjct: 2   IKLKDILHAIPVQEVVGQLDV--------EVTSLCFDSRKANEGSLFVAVRGVHTDGHLF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           + +AI QG   I+V      ++       +   ++V +T   L + A   YG       +
Sbjct: 54  VEKAIEQGCTLIMV------EEMPEKKHEDVTYMMVADTAYALGIAAGNFYGNPSRELKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + VTGT+GK+++A+ +  +    G   + +G  ST+ +   +  +    TTP P+ L   
Sbjct: 108 VGVTGTNGKTTIATLLFNLFTALG---YHVGLLSTVQNQIGERIIPATHTTPDPVALNAL 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  +  +G  +  +E SSH + Q R+ G++   G F+N+  DH+D+H+T   Y  AK + 
Sbjct: 165 LRDMVDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKF 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F++L  + + A+   D+     +++   N      + G +G      K+   H    + +
Sbjct: 225 FDDL-DRFAFALTNGDEKNGSVMLQ---NTFAHKKTYGLKGVADFKAKIIESHFDGML-L 279

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++EG +      L GEF  YN L   G  I +  ++  VL  L ++    GRFE +   S
Sbjct: 280 NIEGHEV--WVKLVGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAI--TS 335

Query: 354 RGGRI-YVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           + G I  VDYAHT +++  +L  I  +     +II V GCGGDRD+ KRP M ++A  ++
Sbjct: 336 KNGVIGIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMS 395

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T DNPR+EDP +I  ++  GIP   +K      +R EAIR A  +    D+++VA
Sbjct: 396 DKVIITSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVA 455

Query: 466 GKGHE 470
           GKGHE
Sbjct: 456 GKGHE 460


>gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 492

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 151/472 (31%), Positives = 235/472 (49%), Gaps = 52/472 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++++S+ +  G +F+A  G   DG+ +I +AI  GA AI       L D           
Sbjct: 26  LTANSKSLSPGNLFIAKKGKMFDGNSYIKEAIQSGACAI-------LTDLFDPCLKKVVQ 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ++  N  +  S+ A   Y    E +  V  TGT+GK++++  ++ +     L  F  GP 
Sbjct: 79  IIHPNPNEIESILARDYYQNSSEELFMVGITGTNGKTTISFIIKYL-----LDLFH-GPC 132

Query: 151 STISSFA--------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             I +          Q  R TTP  I   K L  +S  G     +E +SH L Q R++ I
Sbjct: 133 GLIGTIEYIVGSHRYQATR-TTPDVIENHKMLYEMSLSGTKSAVMEVTSHALIQKRVEYI 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK------ESPAIIYADDAYSKEV 256
                 F+NL  DH+DYH T + Y  AK  LFE L  +      E  AI+  DD + +++
Sbjct: 192 DFDVAVFSNLTLDHLDYHLTMENYCAAKNCLFEGLGEQPTKKRNEKWAIVNIDDPWCEQI 251

Query: 257 MKRAHNAGCRVLSVGY--------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +K     GC+   + Y        Q   I L           + ++ +G+  +  +PL G
Sbjct: 252 VK-----GCQAHRLTYGIDKPADLQASHIKLSS-----QGTSINLTYQGQTIECFWPLLG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F +YN L A G+ +   I    ++E +  +  V GR E V  N+    IY+D+AHT ++
Sbjct: 302 RFNIYNCLAAIGVLLTQNIPLKEIVEKMACIPNVKGRLEKV-LNNLELDIYIDFAHTDDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +LK +  I  GR++ +FGCGGDRD  KRP M   +   +D++IVT DNPRSE+P  I
Sbjct: 361 LSNVLKTLSEIKKGRLLTIFGCGGDRDPSKRPKMAIASEQYSDLSIVTSDNPRSENPISI 420

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             EI+ G      FI + +R  AI+ AIE+ +  D++++AGKGHET  I+++
Sbjct: 421 CQEIVTGFVNPNSFIVEIDRRAAIQKAIEIASPGDMILIAGKGHETYQILSH 472


>gi|257453538|ref|ZP_05618828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
 gi|257448996|gb|EEV23949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
          Length = 520

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 164/505 (32%), Positives = 250/505 (49%), Gaps = 67/505 (13%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            PE + QL + P+    +   +   DSR +  G +FV +        L + + +A     
Sbjct: 13  LPESVRQL-LNPVM--NQPFGQFVVDSRQVGQGDVFVLLKSQNATDSLDL-EKVAGYLAQ 68

Query: 71  IVVSSAYSLQDFSAT-IRSN--TPILVVDNTRKFL-SLFASRLYGKHPEN---ILAVTGT 123
           +   +A+ L +   + I+S    PI+ +   R FL SL  + L  +HP     ++AVTGT
Sbjct: 69  VSDKAAFVLSEIDVSAIQSQFMLPIIYLPTIRDFLGSLIQTSLQQQHPTQLPAVIAVTGT 128

Query: 124 SGKSSVASFVQQICQRSGLSSFQIG-------PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +GK++V+  V Q+  +SG+ +  +G       P  T S+       TT     L  A+  
Sbjct: 129 NGKTTVSQLVAQLISQSGIKTAVMGTAGNGVLPNLTPSTH------TTLEVFNLQHAIDD 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + QGV  +++EASSHGL Q RL G+ +    FTNL RDH+DYH     Y  AK RLF++
Sbjct: 183 FAKQGVQALAIEASSHGLHQQRLQGVPINVAMFTNLSRDHLDYHTDMDDYAQAKARLFDK 242

Query: 237 L-LPKESPAIIYADDAYSKEVMKRAHNAG-----------------CRVLSVGYQGKFIH 278
              P  + AII  DD +S E+M  A NA                   + +    QG  + 
Sbjct: 243 AHFPTLTHAIINLDDEFS-ELMIEAANASHLTVWTYSLTNDQADFFAKTILPSLQGGDLT 301

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +    A+  + ++T++          PL G F V N L +     A+   +A+ L   + 
Sbjct: 302 IALSKAVTPQGELTVNS---------PLLGRFNVANLLASIAGAFALSQSAAMGLSVAQI 352

Query: 339 LHVVP------GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              VP      GR + V + S      VDYAHT ++LE +L ++++  +G +  VFGCGG
Sbjct: 353 QAAVPTLRGATGRMDRVPSTSSC--FIVDYAHTPDALEQVLTSLKSHCTGELWAVFGCGG 410

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRI 446
           DRD+GKRP+M +  L LAD  I+T DNPRSEDP  I  ++  G+         IE  +R 
Sbjct: 411 DRDKGKRPLMAQAGLRLADKVILTADNPRSEDPNAILNDMQAGMTCQQHYQAIIEP-DRQ 469

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHET 471
           +AI  A++     D++V+AGKGHET
Sbjct: 470 KAIEYAVQHAKPSDIVVIAGKGHET 494


>gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M23]
 gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23]
 gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 491

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 231/468 (49%), Gaps = 41/468 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79
           Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+         S+
Sbjct: 12  QARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSV 71

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136
            D +         + V   R  L   A R +G HP     ++ VTGT+GK+S    + Q 
Sbjct: 72  PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 121

Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             R G+ S   G T  +  + Q      TTP  + L + L  L   G   V++E SSH L
Sbjct: 122 WHRLGVRSATCG-TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 180

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD +  
Sbjct: 181 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAH--QDVQAAVINVDDLFGL 238

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------P 305
            ++    N G R + V   G         A    Q ++++++G  FD +          P
Sbjct: 239 RLLHGLAN-GVRRVGVSVCGH------TDADVMAQHLSLNLQGIGFDLVIGADRAPVRSP 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT
Sbjct: 292 LMGRFNVDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED 
Sbjct: 352 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDG 411

Query: 426 EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           + I A+I+ G   P  ++ + +R  AI  AI + +  DV+++AGKGHE
Sbjct: 412 DGIVADILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHE 459


>gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 511

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 144/479 (30%), Positives = 244/479 (50%), Gaps = 40/479 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAEA ++  A + Q   +  
Sbjct: 23  DQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGPA-AKQKIGSID 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143
           R    ILV+D+   ++       +   P     ++ VTGT+GK+++   ++ + ++ G  
Sbjct: 82  RKR--ILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTNGKTTITFLLEYLLKKLGKK 139

Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +   G   +    F++    TT     L K L+           +E SSH + Q R+ G 
Sbjct: 140 TALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIAQKRISGC 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAY----SKEV 256
           +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+  +++  DD +    S ++
Sbjct: 200 EFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNEKDGISVLNHDDPWISKLSSDL 259

Query: 257 MKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPL 306
            KR+     ++    ++          KF      C  H  K+++ + V         PL
Sbjct: 260 EKRSSLVSTKITESEFKNHDFFFVTDKKFTENGSTCIFHTPKEKIQLFV---------PL 310

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN----SRG-GRIYVD 361
            GEF + NA+ A  +   +      + + +      PGR E +  +    SR    + VD
Sbjct: 311 VGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDFSRSLPTVIVD 370

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + L+ +L++I+ +  G++I VFGCGGDRD GKRP+MG IA + +D   +T DNPR
Sbjct: 371 YAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAEEFSDQLFITSDNPR 430

Query: 422 SEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           SE+P+KI  +I+ GI    +   + +R +AI  +I+  NK+D++++AGKGHE   I+ +
Sbjct: 431 SEEPQKIVNDILMGIKKRKKITIEIDRFKAINESIKFANKEDIVLIAGKGHEDYQILND 489


>gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes 266]
          Length = 529

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 46  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 101

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     +
Sbjct: 102 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 158

Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G   TI  F  D          +TTP    L    + ++ +G + V +E SSH L   R+
Sbjct: 159 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRV 217

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG      +FTNLGRDH+D+H T   YFNAK RLF   L +    +I  DD   +++++R
Sbjct: 218 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARV--GVINVDDPRGRQLVER 275

Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               G + ++        YQ       +  AI +     +S    +      LPGEF V 
Sbjct: 276 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 330

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +A  +  A G+    V + L    V PGR E V          VD+AHT  ++   L
Sbjct: 331 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 389

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              R+ +  GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA +
Sbjct: 390 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 449

Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G           I+ G R EAI  A+ M    DV+ V GKGHET
Sbjct: 450 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 495


>gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis 961-5945]
 gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis G2136]
          Length = 492

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 229/478 (47%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEISSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G    F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|325954321|ref|YP_004237981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
 gi|323436939|gb|ADX67403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
          Length = 488

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 158/481 (32%), Positives = 244/481 (50%), Gaps = 41/481 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E+  DSR  + G +FVAI G + DGH +I Q    G   IV      +Q      + N
Sbjct: 25  VGELIFDSRKAKKGDVFVAIKGTQTDGHSYIEQVTEIGVSVIVCEVLPEIQ------KEN 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSFQI 147
              ++V++    L + AS  Y    +N+  V  T         S + ++  + G +S  +
Sbjct: 79  IVYVLVEDASIALGVMASNYYDNPTKNLQLVGITGTNGKTTTTSLLYELFTKLGYASVLV 138

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              STI      + +    TTP  + L +       +G  +  +E SSHG+ Q+R+ G+ 
Sbjct: 139 ---STIQIVVDGDIIPTQNTTPDIVTLNRIFRQAVDKGCEYAFMEVSSHGIVQNRIAGLY 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTN+  DH+DYH T Q Y  AK + F+E LP  + A++  DD   + VM +   A
Sbjct: 196 FRVAAFTNITHDHLDYHITFQNYIQAKKKFFDE-LPASTKALVNLDDRNGR-VMLQNTVA 253

Query: 264 GCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                ++     ++GK +  +    + N  Q          +F   L G+F  YN L+  
Sbjct: 254 SKHFFTLKGDAEFKGKILESRFDGMLLNFNQQ---------EFWTNLIGQFNAYNLLLVY 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRT 378
           G+   +G +   VL  L  L  V GRF+   T  +G R I VDYAHT ++LE +L  I  
Sbjct: 305 GIAHLLGQEDTEVLTILSVLGSVEGRFQTFHT--QGDRVIIVDYAHTPDALENVLDTIGG 362

Query: 379 ITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I +   ++I V GCGGDRD+ KRP M  IA   +D+AI T DNPR+E+PE I A++  G+
Sbjct: 363 IRTKNEQLITVVGCGGDRDKTKRPEMADIAARKSDLAIFTSDNPRTENPEAILADMEAGV 422

Query: 437 -PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            P F +K     +R EAI+TA++M  K D++++AGKGHET   + NG +    D ++ +E
Sbjct: 423 EPQFYDKTLKITDRKEAIKTALKMSQKHDIILIAGKGHETYQEI-NGVRNHFSDVEVAKE 481

Query: 492 I 492
           +
Sbjct: 482 L 482


>gi|262373645|ref|ZP_06066923.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
 gi|262311398|gb|EEY92484.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
          Length = 499

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 233/466 (50%), Gaps = 39/466 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           W  +  N    DSR + +G IF+A+      E    F  +A+  GA A++  SA  L++ 
Sbjct: 17  WVSQPFNGFCLDSRKVASGQIFIALNSYSQPEKTIEFAQKALDSGALAVISESALGLKNE 76

Query: 83  SATIRSNTPILVVDNTRKFLSLFASR-LYGKHPENIL---AVTGTSGKSSVASFVQQICQ 138
                      V    R  +  +  + L    P   L   AVTGT+GK++++  V ++  
Sbjct: 77  ----------WVCPQVRYLMGEWQKQYLQASEPVQALRGVAVTGTNGKTTISRLVAELIS 126

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             GL    +G T   I      +  TT   + L  AL   + QG   V++EASSHGL+Q 
Sbjct: 127 SQGLGCAVMGTTGNGILPNLTPSTHTTLDALQLQTALHDYAQQGAKFVALEASSHGLEQG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RL+G  +    ++NL RDH+DYH T  AY  AK  LF+    K    +I  DD Y+  ++
Sbjct: 187 RLNGCDIEIAVYSNLSRDHLDYHGTLDAYAEAKALLFKFATLKA--VVINLDDQYASIML 244

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPG 308
           K A N   +   + Y      L +  A ++   +   + G  F  + P         L G
Sbjct: 245 KAAKNNPSQPKILTYS-----LTQTSADYHIADLQYRLSGASFTLISPVGSYAVNSPLLG 299

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F V N L +       G D A +++ + +L   PGR + +  + R     VDYAHT ++
Sbjct: 300 QFNVENLLASLIAAEYAGFDLADLVKFVPELKGAPGRMQVIQDHER--LFVVDYAHTPDA 357

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +L  ++   +G++  VFGCGGDRD+GKRP+M + ALD A+  ++T DNPR+E+PE+I
Sbjct: 358 LIQVLTTLKRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDYANPVVLTSDNPRTENPEQI 417

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            A++ HG+        E  +R EAI+  ++     D++V+AGKGHE
Sbjct: 418 FADMKHGVDFDGHQIDEIHDRREAIKFVVKQAQAGDIVVIAGKGHE 463


>gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha153]
          Length = 492

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 229/478 (47%), Gaps = 36/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90
           SDSR I+ G IFVA  G   DG  +IP A+A GA       A+   D    F+       
Sbjct: 28  SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   + + +    + A+++YG   + +    VTGT+GK+S+  ++ Q     G  +  +G
Sbjct: 81  PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   + 
Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY   K RLF     K   A+I  DD Y  E+  R     C  
Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L+V   G   H     A       T S +G    F  P         L G F   N    
Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G     VL+ L K+    GR + +  NS    + VDYAHT ++LE  L  ++ 
Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           I      +  VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +
Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431

Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     + +R  AIR A+E     D++++AGKGHE    V   + + S D +I+ + L
Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488


>gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
 gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
          Length = 495

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 231/468 (49%), Gaps = 41/468 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79
           Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+         S+
Sbjct: 16  QARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSV 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136
            D +         + V   R  L   A R +G HP     ++ VTGT+GK+S    + Q 
Sbjct: 76  PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 125

Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             R G+ S   G T  +  + Q      TTP  + L + L  L   G   V++E SSH L
Sbjct: 126 WHRLGVRSATCG-TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD +  
Sbjct: 185 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAH--QDVQAAVINVDDLFGL 242

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------P 305
            ++    N G R + V   G         A    Q ++++++G  FD +          P
Sbjct: 243 RLLHGLAN-GVRRVGVSVCGH------TDADVMAQHLSLNLQGIGFDLVIGADRAPVRSP 295

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT
Sbjct: 296 LMGRFNVDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHT 355

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED 
Sbjct: 356 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDG 415

Query: 426 EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           + I A+I+ G   P  ++ + +R  AI  AI + +  DV+++AGKGHE
Sbjct: 416 DGIVADILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHE 463


>gi|296113987|ref|YP_003627925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
 gi|295921681|gb|ADG62032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
          Length = 520

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 239/462 (51%), Gaps = 26/462 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + ++   DSR I     FV +  +++D    +  A  +   ++  S+A+ + +F      
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNA-NRYLMSVKDSAAFVISEFDLVGLD 98

Query: 89  ----NTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRS 140
                 PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+CQ S
Sbjct: 99  LDGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQAS 158

Query: 141 GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           G+SS  +G      +    Q    TT   +     +  ++ +GV  +++EASSHGLDQ+R
Sbjct: 159 GISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYR 217

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257
           L G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD   +  +
Sbjct: 218 LQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPAL 274

Query: 258 KRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                A  +++    Q      + K V    +  ++ +     +   + PL G F V N 
Sbjct: 275 FDYETADFQIIGYSQQKPNADFYAKSVRPSLDCVEIEVQTPQGEMTAISPLLGLFNVDNL 334

Query: 316 LVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           L +     A+    A  L +L  +L    GR +    +S+ G   +DYAHT ++L+ +L 
Sbjct: 335 LASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDALKQVLS 392

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           ++R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  
Sbjct: 393 SLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQK 452

Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G+        I + +R  AI  A++   K D++V+AGKGHET
Sbjct: 453 GLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494


>gi|292489362|ref|YP_003532249.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
 gi|292898414|ref|YP_003537783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198262|emb|CBJ45368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291554796|emb|CBA22623.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
          Length = 495

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 157/491 (31%), Positives = 238/491 (48%), Gaps = 36/491 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   +G +FVAI G+  DG  FIPQAIAQG  A++  +  +  D     
Sbjct: 19  ERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGAANDGQIVE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ +    + LS  A R + + P   L + G +G +   +  Q + Q + L    
Sbjct: 79  MHGVPVIYLAQLSQRLSALAGRFH-QQPGAKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G T  +     +           TT S + +   L+ L  +G +  ++E SSHGL QHR
Sbjct: 134 LGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLAAMEISSHGLVQHR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A +FTNL RDH+DYH     Y +AK  LF E   +   AII ADD   +  ++
Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTE--HQVGQAIINADDEVGRRWLQ 251

Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  +A        L  G  G+++   KV        V  +    D      L G F V N
Sbjct: 252 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHIDSRLMGAFNVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVA    +++    + +     +L  V GR E      +   + VDYAHT ++LE  L 
Sbjct: 312 LLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++T+DNPR E+P  I  +I+ 
Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITNDNPRGEEPAAIVGDILS 430

Query: 435 G---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           G         IPG      R +A+   +    + D+++VAGKGHE   I+ +     S D
Sbjct: 431 GLLDAGRARVIPG------RAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-D 483

Query: 486 CDIIREILGLI 496
            D +  +LG++
Sbjct: 484 RDTVARLLGVL 494


>gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M12]
 gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Xylella fastidiosa M12]
          Length = 491

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 232/472 (49%), Gaps = 49/472 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79
           Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+         S+
Sbjct: 12  QARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSV 71

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136
            D +         + V   R  L   A R +G HP     ++ VTGT+GK+S    + Q 
Sbjct: 72  PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 121

Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             R G+ S   G T  +  + Q      TTP  + L + L  L   G   V++E SSH L
Sbjct: 122 WHRLGVRSATCG-TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 180

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD +  
Sbjct: 181 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QDVQAAVINVDDLFGL 238

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK----QQVTISVEGKDFDFLF------ 304
            ++   H     V  VG          VC   +     Q ++++++G  FD +       
Sbjct: 239 RLL---HGLAKGVRRVGV--------SVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAP 287

Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G F V N L  AG+  A+    + +   L  L  + GR   +G       + VD
Sbjct: 288 VRSPLMGRFNVDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVD 347

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR
Sbjct: 348 YAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPR 407

Query: 422 SEDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            ED + I A+I+ G   P  ++ + +R  AI  A+ + + +DV+++AGKGHE
Sbjct: 408 GEDGDGIVADILAGFVRPNLVKVQRDRSAAIAAAVGIASAEDVVLIAGKGHE 459


>gi|291533200|emb|CBL06313.1| UDP-N-acetylmuramyl-tripeptide synthetases [Megamonas hypermegale
           ART12/1]
          Length = 340

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 188/355 (52%), Gaps = 43/355 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           ++ VTGT+GK+S    ++ I +++G   +++G   TI    +D  +    TTP  I L +
Sbjct: 3   MIGVTGTNGKTSSTYMLRDILRKAG---YKVGVIGTIKIMIEDEEMPIHNTTPDVIDLQE 59

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +  Q + +V +E SSH LD +R+ G +     FTNL +DH+DYH+T + Y  AK +
Sbjct: 60  ILDKMYKQNIDYVVMEVSSHALDMNRIAGCEYDTAMFTNLTQDHLDYHKTMENYALAKAK 119

Query: 233 LFE-----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           LF+      L+     A+I  DD +  + M    +  C +++ G +          A+  
Sbjct: 120 LFDSLSAPNLVKSNKNAVINLDDEFGSKTM--IEHTKCNLITYGIKND--------AVLK 169

Query: 288 KQQVTISVEGKDFD---------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            + V I   G  FD         F   + G F VYN L   G+ +A  I   ++ E LE 
Sbjct: 170 AENVEIKASGASFDVKYKDDCVHFDLKVTGMFNVYNILGVIGVALAEKISFDIIKETLEA 229

Query: 339 LHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
              V GRFE V    R G+   + VDYAHT + LE +LK  R I   R+IVVFGCGGDRD
Sbjct: 230 FEAVAGRFELV----RQGQDFSVIVDYAHTPDGLENVLKTAREIAKKRLIVVFGCGGDRD 285

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNR 445
           + KRPIMG+IA  LAD+ I T DNPR+EDPE I +E+  G+       F EK +R
Sbjct: 286 RTKRPIMGRIAAQLADVVIATSDNPRTEDPEFILSEVEAGVLPALHGNFHEKNHR 340


>gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
 gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
          Length = 486

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 247/483 (51%), Gaps = 36/483 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I+ +  DSR ++   +FV I G   DGH FI Q I +GA+ IVV      QD  A  
Sbjct: 20  DTEISTLVYDSRKVEENSVFVCISGAAFDGHKFIGQVIEKGAKVIVVQ-----QDVEAP- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144
                ++  D+TRK L+  ++  +G   E ++ +  T  K        +Q + + +G  +
Sbjct: 74  -KGVTVIRFDDTRKALAEMSAAYFGYPAEELMTIGITGTKGKTTITYMIQSVLEHAGQKT 132

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             IG   TI +   D R+    TTP    + ++   ++  G  +V +E SS GL  HR+ 
Sbjct: 133 GLIG---TIETVIGDERIPSVNTTPESYVIQESFRKMADAGCKNVVMEVSSQGLMLHRVS 189

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G     G FTNL  DHI  + H+    Y   K  LF++        I+  DD Y + ++K
Sbjct: 190 GFTFDYGIFTNLAEDHIGENEHKDMDDYIRCKSLLFQQC----RQGIVNGDDDYVERIIK 245

Query: 259 RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYN 314
             H   C + + G + G  ++   +  I     + +S + K   +++    +PG+F VYN
Sbjct: 246 -GHT--CSLETFGMKPGSDVYADHIERIQEPGYLGVSYDLKGKEEYNVHVDIPGDFTVYN 302

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A  LC  +GI    VL+ L  + V  GR E + T      + +DYAH + SLE +L 
Sbjct: 303 SLAAISLCRHMGIQKKDVLDALNTIQV-KGRLEIIKTPGEY-TLMIDYAHNAMSLESLLT 360

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            IR     +I  +FGCGG+R + +R  MG+++  LAD+ +VT DNPR+E+P  I  +I+ 
Sbjct: 361 TIRKYDPKKIYCLFGCGGNRAKARRYEMGEVSSKLADLTVVTSDNPRNEEPMDIINDILV 420

Query: 435 GI---PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           G+   PG ++   +R EAIR  +E   K D++++AGKGHE    +  G K    + D+IR
Sbjct: 421 GVHKGPGEYVTIPDRKEAIRYCMEHAGKGDIVILAGKGHEDYQEI-RGVKHHMDERDLIR 479

Query: 491 EIL 493
           EI+
Sbjct: 480 EII 482


>gi|326568238|gb|EGE18320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC8]
          Length = 520

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 239/462 (51%), Gaps = 26/462 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + ++   DSR I     FV +  +++D    +  A  +   ++  S+A+ + +F      
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNA-NRYLMSVKDSAAFVISEFDLVGLD 98

Query: 89  ----NTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRS 140
                 PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+CQ S
Sbjct: 99  LDGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQAS 158

Query: 141 GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           G+SS  +G      +    Q    TT   +     +  ++ +GV  +++EASSHGLDQ+R
Sbjct: 159 GISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYR 217

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257
           L G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD   +  +
Sbjct: 218 LQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPAL 274

Query: 258 KRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                A  +++    Q      + K V    +  ++ +     +   + PL G F V N 
Sbjct: 275 FDYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNL 334

Query: 316 LVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           L +     A+    A  L +L  +L    GR +    +S+ G   +DYAHT ++L+ +L 
Sbjct: 335 LASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDALKQVLS 392

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           ++R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  
Sbjct: 393 SLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQK 452

Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G+        I + +R  AI  A++   K D++V+AGKGHET
Sbjct: 453 GLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494


>gi|238898850|ref|YP_002924532.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466610|gb|ACQ68384.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 502

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 238/484 (49%), Gaps = 30/484 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-FSATIRS 88
           I  ++  S  +  G +FVAIVG++ DG  +IPQA++QGA AI+  +   + D  S     
Sbjct: 30  IKGITLKSDEVTTGDLFVAIVGHETDGRHYIPQALSQGAGAILAEAEGVVNDDVSVDQIQ 89

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG------- 141
             PI+ + N  ++LS  A   Y  HP + L + G +G +   +  Q + Q +        
Sbjct: 90  GVPIVYLFNLNQYLSQLAGEFY-HHPASQLNLVGITGTNGKTTNTQLLAQWTMALGEVSA 148

Query: 142 -LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            L +   G    +SS    N+ TT S I + + LS + +   T  ++E SSH L QHR+ 
Sbjct: 149 VLGTLGNGLLRQLSS----NQNTTASAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVA 204

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-IIYADDAYSKEVMKR 259
            +   A  F+NL RDH+DYH     Y  AK  LF   L  ES   II  DD   +  +  
Sbjct: 205 ALPFAASVFSNLSRDHLDYHGDMANYEIAKKSLF---LDHESKNHIINVDDEVGQRWLPE 261

Query: 260 AHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             NA        +  G QG ++  +K+    N   +         +   PL G F V N 
Sbjct: 262 LPNAVAVSTSHQIPSGLQGAWLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNI 321

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+     +A+      +L+   KL  +PGR E      R   + VDYAHT ++L+  L  
Sbjct: 322 LLTLATLLALKYPLDALLKAASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAA 380

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G++  +FGCGGDRD+GKRP+MGKIA  LAD  ++TDDNPR+E P+ I A+I+ G
Sbjct: 381 SRMHCQGKLWCLFGCGGDRDKGKRPLMGKIAETLADQMVITDDNPRTESPKMITADILKG 440

Query: 436 I-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I+  +R EAI   +     +DV+++AGKGHE    + + +   S    + R
Sbjct: 441 VLKTDRASVIQ--DRTEAITHILNQAMPEDVILIAGKGHEVYQFIEHQKLDYSDRATVAR 498

Query: 491 EILG 494
            + G
Sbjct: 499 LMEG 502


>gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 511

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 142/496 (28%), Positives = 252/496 (50%), Gaps = 47/496 (9%)

Query: 14  LINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ + I P +   +++IN +S +S+ +Q G +F+ + G   DG  +  +AI  GAEA +
Sbjct: 9   LLDLVGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAAI 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
           + SA   +    +I     +++ DN         S  + +    +  + VTGT+GK+++ 
Sbjct: 69  IGSAAKQK--IGSIDRERILVIEDNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGKTTIT 126

Query: 131 SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ + ++ G  +   G   +    F++    TT     L K L+           +E 
Sbjct: 127 FLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFAILEV 186

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIY 247
           SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+  +++ 
Sbjct: 187 SSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGISVLN 246

Query: 248 ADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHN-KQQVTI 293
            DD +    S ++ KR+     ++    ++          +F      C  H  K+++ +
Sbjct: 247 HDDLWISKLSSDLEKRSSLVSTKITKSEFKNDGFFYVTDKQFTESGSTCIFHTPKEKIKL 306

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TN 352
            V         PL GEF + NA+ A  +   +      + + ++     PGR E +   N
Sbjct: 307 FV---------PLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDN 357

Query: 353 SRGGR----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   R    + +DYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +
Sbjct: 358 NDVSRSLPIVIIDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDRSKRPLMGSIAEE 417

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDV 461
            +D   +T DNPRSE+P++I  +I+ G    IEK        +R +AI  +I+  NK+D+
Sbjct: 418 FSDHVFITSDNPRSEEPQQIVNDILMG----IEKREKITFDIDRFKAINESIKFANKEDI 473

Query: 462 LVVAGKGHETVHIVTN 477
           +++AGKGHE   I+ +
Sbjct: 474 VLIAGKGHEDYQILND 489


>gi|326564323|gb|EGE14553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 103P14B1]
 gi|326565088|gb|EGE15281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 46P47B1]
 gi|326569939|gb|EGE19986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC1]
 gi|326570017|gb|EGE20063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC7]
 gi|326573677|gb|EGE23635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis O35E]
 gi|326574700|gb|EGE24636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 101P30B1]
          Length = 520

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 239/462 (51%), Gaps = 26/462 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + ++   DSR I     FV +  +++D    +  A  +   ++  S+A+ + +F      
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNA-NRYLMSVKDSAAFVISEFDLVGLD 98

Query: 89  ----NTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRS 140
                 PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+CQ S
Sbjct: 99  LDGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQAS 158

Query: 141 GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           G+SS  +G      +    Q    TT   +     +  ++ +GV  +++EASSHGLDQ+R
Sbjct: 159 GISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYR 217

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257
           L G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD   +  +
Sbjct: 218 LQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPAL 274

Query: 258 KRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                A  +++    Q      + K V    +  ++ +     +   + PL G F V N 
Sbjct: 275 FDYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNL 334

Query: 316 LVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           L +     A+    A  L +L  +L    GR +    +S+ G   +DYAHT ++L+ +L 
Sbjct: 335 LASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDALKQVLS 392

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           ++R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  
Sbjct: 393 SLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQK 452

Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G+        I + +R  AI  A++   K D++V+AGKGHET
Sbjct: 453 GLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494


>gi|291288108|ref|YP_003504924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885268|gb|ADD68968.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 484

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 242/484 (50%), Gaps = 60/484 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  + +++ DSR+I+    F A  G   D H F  +  A G    VV+  + ++      
Sbjct: 22  ETDVKDINIDSRNIKRKAPFFAFQGAAVDSHKFAAEVYASGKVPFVVAE-HKIE------ 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
               P +VV++ RK L+      +GK  E +  +AVTGT+GK++    + +I + +G  S
Sbjct: 75  --GVPTVVVEDGRKALARACRNFFGKPDEEMDSIAVTGTNGKTTTTYIINEILKTAGRKS 132

Query: 145 FQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +G T        D++      TTP      K L      G   + +E SSH L QHR+
Sbjct: 133 VLVGTTGV----KYDDKFIYMDSTTPPTYEFFKVLRDAKDAGCDTLVMEVSSHALHQHRI 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMK 258
           +G+      FTNL  DH+DYH+T   YF AK  LF    P+ S   +I  D  + + ++K
Sbjct: 189 NGVVFDVAIFTNLSGDHLDYHKTMDEYFEAKKILF---TPEYSRVGVIGKDSEFGERLLK 245

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFP-------- 305
            A      V  V Y            I NK ++T       + G    F++P        
Sbjct: 246 EAE-----VDRVSY-----------GITNKSEITAEEIWFGLSGLRAKFVYPAGSIEMES 289

Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   + N + A   CI +GID+  +   +E+L  VPGR E     S G  I+VD+AH
Sbjct: 290 SLVGLHNLENLMAAGSGCIMLGIDAKHIKSGIERLKNVPGRLEKF-EKSNGAYIFVDFAH 348

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++L+ +L+ + +    R+I VFGCGGDRD+ KRP M K A   +D+ IVT DNPR+ED
Sbjct: 349 TDDALKNVLEALGSFKENRVITVFGCGGDRDRSKRPRMAKTAELDSDVVIVTSDNPRTED 408

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+++  +I+ G       I   +R +AI+ A+EM   +D++++AGKGHE   I+  G +K
Sbjct: 409 PQQVIEDILVGFENADSVIICPDRSKAIQKAVEMAEPKDIVLIAGKGHEDYMIL--GTEK 466

Query: 482 MSVD 485
           +  D
Sbjct: 467 IHFD 470


>gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 492

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 243/477 (50%), Gaps = 36/477 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++  +  DSR +  G +FVAI G++ DG  FI +AI  GA AI+   A  L +F  +  
Sbjct: 18  QQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIENGAVAII---ADRLCEFETSFE 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P+ +V    K L   ASR Y +  H  +++ VTGT+GKS+  + +  + Q     S 
Sbjct: 75  ---PLYLVSELTKKLPELASRFYQQPSHMLDLIGVTGTNGKSTTTAMIAHLAQFCNSQSA 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG   T+     DN      TTPS + L + L+ L  Q    V++E SSHGL Q R+  
Sbjct: 132 IIG---TLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLVAMEVSSHGLVQQRVAQ 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KRA 260
            +  A  FTNL RDH+DYH     Y +AK+ LF++  P+    ++  DD  + + + K +
Sbjct: 189 CQFKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKDFEPEL--VVLNQDDGQTDQWLEKYS 246

Query: 261 HNAGCRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            N+   ++  G +       +F++   V          ++    D     PL GEF +YN
Sbjct: 247 FNS---LVCYGRKNLPPKNAQFVYFSDVTYSAQGIAAQLTTSWGDIAIKSPLFGEFNLYN 303

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
              A    + +G   A ++    +L  V GR +      +   I VDYAHT  +L + L+
Sbjct: 304 LTAALATLLGLGYPLAQLIAGCAQLQPVAGRMQAFSAKGKPTCI-VDYAHTPEALALALQ 362

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++    G +  VFGCGGDRD+GKR +M + A   AD  I+T DNPRSE+P+ I A++  
Sbjct: 363 ALQQHVPGGVSCVFGCGGDRDKGKRALMAQAAEQNADKVIITSDNPRSENPDAIIADVAQ 422

Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           G+      ++E  +R  AI  AI      +V+++AGKGHE   I+  G++++   CD
Sbjct: 423 GLAQPTKAYLE-ADRATAISYAISNAKADEVILIAGKGHEDYQII--GDQRIDF-CD 475


>gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
 gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
          Length = 496

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 164/493 (33%), Positives = 254/493 (51%), Gaps = 19/493 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       I Q+   P    E+++  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLRELL--TLIPTITQIPEHPA--LEKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117
             AI  GA A ++S A +LQ +  T   +  ++ V++     +  A+  YG +P     +
Sbjct: 57  SSAIEAGAIAAIISPAAALQ-YPPT--GDAYVIQVEDVVSVCAEIAAAFYG-YPARQMKM 112

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++    +    +  +G   T  + + Q    TTP    L + L+ 
Sbjct: 113 IGVTGTNGKTTTTHLIEFFLSQCQYPTALLGTLYTRWAGYEQTAVHTTPFAAQLQEQLAQ 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  +  +E SSH L Q R+         FTNL +DH+D+HQ  + YF AK +LF  
Sbjct: 173 ALKAGSQYGVMEVSSHALAQRRVQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSA 232

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K   AII  DD Y K ++           SV       + + +C   N     +   
Sbjct: 233 EYLK-GKAIINLDDPYGKRLIDSLSREKVWSYSVSDSSANFYTRDLCYEANGVSGILHTP 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  F  PL G++ + N L A G  +++G+D   ++++L     VPGR E V  + +  
Sbjct: 292 IGEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQD 351

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA +LAD+A+V
Sbjct: 352 ISVIVDYAHTPDSLENLLKAARPFIEGRMICVFGCGGDRDRTKRPKMGKIAAELADVAVV 411

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +I+ GIP  ++     +R  AI  AI      D +++AGKGHE  
Sbjct: 412 TSDNPRTEDPQQILKDILAGIPESVKPQVIADRALAILKAITEAKPGDGVLIAGKGHEDY 471

Query: 473 HIVTNGEKKMSVD 485
            I+  G +K+  D
Sbjct: 472 QIL--GTEKIHFD 482


>gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 533

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 237/463 (51%), Gaps = 37/463 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  + +DSR +  G +F AI G + DG+ +I +A+ +GA AI+       QD     
Sbjct: 59  DREVTCLITDSRRVVPGALFFAIGGLRTDGNYYIEEAVDRGAVAIITE-----QDLG--- 110

Query: 87  RSNTPI--LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS-- 140
            S+ PI  + V++ R  L++ A   YG+  E   +  VTGT+GK++V+  VQ +      
Sbjct: 111 -SHFPIDYIQVEDVRMALAVVAREFYGRPDERLGLTGVTGTNGKTTVSMLVQHLIGGDDK 169

Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G   + IGP  T+ SF      TTP  + +   LS +   G     +E SSHG+DQ
Sbjct: 170 VGLIGTIRYDIGP-RTLPSFR-----TTPESVDVYALLSQMEDGGCKDAVMEVSSHGVDQ 223

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF---EELLPKESPAIIYADDAYS 253
            R+ G+ +    F NL +DHIDYH++ +AY+ AK  LF      +P    A++  D AY 
Sbjct: 224 KRVYGLDIDVAVFLNLTQDHIDYHKSMEAYYEAKKGLFIGRAGAVPHS--AVVNMDCAYG 281

Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           + ++        R L+ G      +  +KV  + +  +  +   G     + PL G + V
Sbjct: 282 RRLLTEL-PGDVRALTFGEHADAQVRAEKVRLLADHTEFELYWPGGQATVVSPLLGRYNV 340

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A     A G +   +++ +     VPGR E +    +   + VDYAHT ++L+  
Sbjct: 341 SNLLAALATGWAKGFEIEHLVKRIPSFRGVPGRMELI-HEKQPYNVLVDYAHTDDALKNA 399

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              +R IT G++IVVFGCGGDRD+ KR +M K  L+ AD    T DNPRSE  E+I  ++
Sbjct: 400 TGMLREITPGKLIVVFGCGGDRDRSKRSLMLKATLEHADQIFATSDNPRSESVEQIFEDM 459

Query: 433 IHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHET 471
             G    +++   IE    AI  A++     D +++AGKGHE+
Sbjct: 460 RLGNETSLDRVEFIEDRKHAISRALDAAQAGDCVLIAGKGHES 502


>gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
 gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
          Length = 501

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 240/472 (50%), Gaps = 47/472 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R R   ++ +DSR ++AG  FVA  G   DG  ++ +A+ QGA A++V  A  LQ F   
Sbjct: 19  RSRVQGDLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAALLVE-ADGLQAFDL- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ------I 136
             S   I  +   +    L A + +  HP    ++LAVTGT+GK++ A ++        +
Sbjct: 77  --SGDSIAALKGLKAATGLIADQWFA-HPSGELDVLAVTGTNGKTTTAWWLAHALSKVTL 133

Query: 137 CQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             R+G +   +  +G    + S      +TTP P+ L +A    + QG+   ++EASS G
Sbjct: 134 NTRTGCALVGTLGVGVPPALESTG----MTTPDPVLLQRAFRSYADQGLAACAIEASSIG 189

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           + +HRLDG K+    FTN  +DH+DYH +  AY+ AK +LF+   P    A++  DDA+ 
Sbjct: 190 IVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFD--WPGLPAAVVNIDDAHG 247

Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +  R       V SV  QG   +  K +         T+   G        L G++ V
Sbjct: 248 ARLWARLQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNV 307

Query: 313 YNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNS 368
            N L  +A   C+ + ++ A  ++    L  VPGR + +    + G+  + VDYAHT ++
Sbjct: 308 SNLLGVLATLRCLGLTLEQA--VQACADLEPVPGRMQQI---VKPGQPLVAVDYAHTPDA 362

Query: 369 LEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           LE  L+ ++       G++  VFGCGGDRD  KRP+MG+ A   AD   VT DNPRSE P
Sbjct: 363 LEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPRSEVP 422

Query: 426 EKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVVAGKGHE 470
           E I  +I+ G    ++ G  +        AI  AI   + +DV+++AGKGHE
Sbjct: 423 ESIIDQILAG----MQAGQALHVQADRAAAIAQAIARADARDVVLIAGKGHE 470


>gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 511

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 245/492 (49%), Gaps = 37/492 (7%)

Query: 13  ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L++ + I P +   + KIN +S +S+ +Q G +F+ + G   DG  +  +AI  GAEA 
Sbjct: 8   KLLDLVGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAA 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           ++ SA   +    +I     +++ DN         +  + +    +  + VTGT+GK+++
Sbjct: 68  IIGSAAKQK--IGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ + ++ G  +   G   +    F++    TT     L K L+           +E
Sbjct: 126 TFLLEYLLKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246
            SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+  +++
Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGISVL 245

Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTI 293
             DD +    S ++ K +     ++    ++          KF      C  H  ++   
Sbjct: 246 NIDDPWISKLSFDLEKGSSLVSTKITDSEFEKDDFFFVTDKKFTESGSTCIFHTPRE--- 302

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---- 349
                      PL GEF + NA+ A  +   +      + + ++     PGR E +    
Sbjct: 303 -----KIKLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDN 357

Query: 350 -GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              +S    + VDYAHT + L+ +LK+I+ +  G++I VFGCGGDRD  KRP+MG IA +
Sbjct: 358 DDVSSLLPTLIVDYAHTPDGLKKVLKSIKKLCEGKLITVFGCGGDRDCSKRPLMGSIAAE 417

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVA 465
            +D   +T DNPRSEDP+KI  +I+ GI    +   + +R +AI  +I+  NK+D++++A
Sbjct: 418 FSDHLFITSDNPRSEDPQKIVNDILMGIEKRDQITIEIDRFKAINESIKFANKEDIVLIA 477

Query: 466 GKGHETVHIVTN 477
           GKGHE   I+ +
Sbjct: 478 GKGHEDYQILND 489


>gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
 gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
          Length = 501

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 239/472 (50%), Gaps = 47/472 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R R   ++ +DSR ++AG  FVA  G   DG  ++ +A+ QGA A++V  A  LQ F   
Sbjct: 19  RSRVQGDLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAAVLVE-ADGLQAFDL- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ------I 136
             S   I  +   +    L A + +  HP    ++LAVTGT+GK++ A ++        +
Sbjct: 77  --SGDSIAALKGLKAATGLIADQWFA-HPSGELDVLAVTGTNGKTTTAWWLAHALSKVTL 133

Query: 137 CQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             R+G +   +  +G    + S      +TTP P+ L +A    + QG+   ++EASS G
Sbjct: 134 NTRTGCALVGTLGVGVPPALESTG----MTTPDPVLLQRAFRSYADQGLAACAIEASSIG 189

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           + +HRLDG K+    FTN  +DH+DYH +  AY+ AK +LF+   P    A++  DDA+ 
Sbjct: 190 IVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFD--WPGLPAAVVNIDDAHG 247

Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +  R       V SV  QG   +  K +         T+   G        L G++ V
Sbjct: 248 ARLWARLQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNV 307

Query: 313 YNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNS 368
            N L  +A   C+ + ++ A  ++    L  VPGR + +    + G+  + VDYAHT ++
Sbjct: 308 SNLLGVLATLRCLGLTLEQA--VQACADLEPVPGRMQQI---VKPGQPLVAVDYAHTPDA 362

Query: 369 LEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           LE  L+ ++       G++  VFGCGGDRD  KRP+MG+ A   AD   VT DNPRSE P
Sbjct: 363 LEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPRSEVP 422

Query: 426 EKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVVAGKGHE 470
           E I  +I+ G    ++ G  +        AI  AI     +DV+++AGKGHE
Sbjct: 423 ESIIDQILAG----MQAGQALHVQADRAAAIAQAIARAEARDVVLIAGKGHE 470


>gi|262184484|ref|ZP_06043905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 517

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 239/463 (51%), Gaps = 35/463 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +S  +  G +F A+ G +  G  F     A   EA  + +    +          P+LVV
Sbjct: 32  NSAALPPGGLFAALPGTRVHGARF-----AADTEAAAILTDAEGKRILNDAGEKRPLLVV 86

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++ R  L   ++ +Y  HP     IL VTGTSGK++ +  ++     +G S   IG T T
Sbjct: 87  EDIRAILGAVSAEIY-SHPTQKLTILGVTGTSGKTTTSYLLEAGLLHAGYSVGLIGTTGT 145

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            I+       LTTP    L +  + + S+GVTHV +E SSH L   R+ G +   G FTN
Sbjct: 146 RINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGRVQGTRFDVGGFTN 205

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSV 270
           L +DH+D+H T + YF AK  LF+   P+ +  ++I  DD + + + +RA       +S 
Sbjct: 206 LSQDHLDFHPTMEDYFEAKALLFDG--PQAADRSVICVDDEWGRRMAQRAAARPVIRVST 263

Query: 271 GYQGKFIHL---KKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCI 323
             QG    +   +    +   QQV +++   +    F+F  P+PG F + NA +A G+  
Sbjct: 264 TPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNIANAALATGMAA 323

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379
           +IGI+  + LE +EK+  VPGR E V    RG      VDYAH   ++  +L+ +RT   
Sbjct: 324 SIGIEPQVFLEGVEKV-AVPGRMERV---DRGQDFVAVVDYAHKPAAIAAVLETLRTQLE 379

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
            ++GRI +V G GGDRD  KRP+MG  A   AD+ +VTDDNPR+EDP  IRA ++ G   
Sbjct: 380 GSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVTDDNPRTEDPASIRAAVLAGAQE 439

Query: 437 --PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             P     E G+R +AI   +      D ++V GKGHE   ++
Sbjct: 440 ANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHEVGQLI 482


>gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
          Length = 507

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 159/496 (32%), Positives = 240/496 (48%), Gaps = 52/496 (10%)

Query: 1   MKLQDLIYK-----DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           M L DL+ +       P+L++     P  W    I+ V   S ++  G +F  + G K D
Sbjct: 1   MYLNDLLARLHEDPSSPKLLSPRGDNP--W----IDRVVHHSGNVAPGSLFACVSGGKAD 54

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH F   A+ +GA A+ V  A  L      +            R+F+   A+ LYG+  +
Sbjct: 55  GHRFAASALDRGAVALCVERALDLPVPQVVVPD---------VRRFMGRLAAVLYGEPAQ 105

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIY 169
            +  + +TGT+GKS+    ++ + Q +G+ +  +G   TI     D  L    TTP    
Sbjct: 106 RLTHVGITGTNGKSTTTYMLRSVLQSAGVKTGLLG---TIVYHDGDKELEADRTTPENTD 162

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +   L+ + S G     +E SSHGL+Q R++G +   G FTNL  +H+DYH T++AYF A
Sbjct: 163 IQSFLARMVSNGCGACVMETSSHGLEQGRIEGCRFDRGGFTNLSPEHLDYHGTEEAYFQA 222

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--------RVLSVGYQGKFIHLKK 281
           K  LFEE +          DDAY + +++ A+            R   +G   K   L  
Sbjct: 223 KKLLFEEYMKPSWKGASNRDDAYGRRLLE-AYPENLVGYTREEPRPGDLGATLKSFDLTG 281

Query: 282 VCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +C       +T+  +G+   +   PL G + V NAL  A L   + ID   +   L  + 
Sbjct: 282 MCL-----DLTLP-DGRVLPEVHLPLIGTYNVENALACAALARTLDIDGETIRRGLASMP 335

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGR E       G    +DYAHT + LE +L  +R +  G++  VFG GG+R    R 
Sbjct: 336 QVPGRLERYSLPG-GVTCVIDYAHTPDGLEKVLSTLRHVCRGQLWSVFGHGGERTTSHRK 394

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIE 454
            +G+ A  LAD  +VT DNPRSEDP  I  +I+ GI G      +  + +R EAIR A++
Sbjct: 395 ALGEHAGRLADRVVVTMDNPRSEDPGAIAEQIVGGIQGSGAATPWEVRLDRGEAIRFALD 454

Query: 455 MLNKQDVLVVAGKGHE 470
                DV++V+GKG E
Sbjct: 455 GAQPGDVVLVSGKGPE 470


>gi|227833496|ref|YP_002835203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454512|gb|ACP33265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
          Length = 500

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 159/465 (34%), Positives = 240/465 (51%), Gaps = 35/465 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +S  +  G +F A+ G +  G  F     A   EA  + +    +          P+LVV
Sbjct: 15  NSAALPPGGLFAALPGTRVHGARF-----AADTEAAAILTDAEGKRILNDAGEKRPLLVV 69

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++ R  L   ++ +Y  HP     IL VTGTSGK++ +  ++     +G S   IG T T
Sbjct: 70  EDIRAILGAVSAEIY-SHPTQKLTILGVTGTSGKTTTSYLLEAGLLHAGYSVGLIGTTGT 128

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            I+       LTTP    L +  + + S+GVTHV +E SSH L   R+ G +   G FTN
Sbjct: 129 RINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGRVQGTRFDVGGFTN 188

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSV 270
           L +DH+D+H T + YF AK  LF+   P+ +  ++I  DD + + + +RA       +S 
Sbjct: 189 LSQDHLDFHPTMEDYFEAKALLFDG--PQAADRSVICVDDEWGRRMAQRAAARPVIRVST 246

Query: 271 GYQGKFIHL---KKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCI 323
             QG    +   +    +   QQV +++   +    F+F  P+PG F + NA +A G+  
Sbjct: 247 TPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNIANAALATGMAA 306

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379
           +IGI+  + LE +EK+  VPGR E V    RG      VDYAH   ++  +L+ +RT   
Sbjct: 307 SIGIEPQVFLEGVEKV-AVPGRMERV---DRGQDFVAVVDYAHKPAAIAAVLETLRTQLE 362

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
            ++GRI +V G GGDRD  KRP+MG  A   AD+ +VTDDNPR+EDP  IRA ++ G   
Sbjct: 363 GSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVTDDNPRTEDPASIRAAVLAGAQE 422

Query: 437 --PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             P     E G+R +AI   +      D ++V GKGHE   ++ +
Sbjct: 423 ANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHEVGQLIGD 467


>gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 498

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 148/490 (30%), Positives = 254/490 (51%), Gaps = 52/490 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + + SDSR ++   +F+ I G   D HL   +   +GA A+V  +   ++D    +  
Sbjct: 26  EFDHIESDSRGLKERNLFICIKGTNFDSHLIARELQRKGAVALV--AEMPIEDEEVVV-- 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSF 145
             PI+ V ++R   +L     Y  HP   L    VTGT+GK+++ + +  +     LSSF
Sbjct: 82  --PIVYVKSSRLVEALLTMEEYC-HPYRKLTTIGVTGTNGKTTITTLIYHV-----LSSF 133

Query: 146 Q-----IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +     IG    +   +   + + TTP P+ LAK L   +     +  +E SSH L  +R
Sbjct: 134 ERKASLIGTVRNVVGENIYTNPKNTTPGPVELAKLLQLSTKLKSEYFIMEVSSHSLSMNR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++G++   G  +N+ RDH+D+H T   Y+ +KM+LF  LL     A++  D     ++  
Sbjct: 194 VEGMRFDVGIISNVTRDHLDFHPTFDDYYRSKMKLFS-LLKTNGIAVVNGDKINIADI-- 250

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPG 308
             H +  R+ + G+  +        + +  + + IS  G DF    P          L G
Sbjct: 251 --HISRNRITTYGFGDE--------SDYRIENLDISRTGMDFTIQTPYGSSHRIYSRLIG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSN 367
           E   YN   A     ++  D   + + +     VPGRFEFV   ++ G  + VD+AHT +
Sbjct: 301 EHNAYNIAAAVAALNSLNYDLDHIAKAISSFGGVPGRFEFVEEATKYGFDVVVDFAHTPD 360

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +LK  R +T GR+I+VFG GG  D+GKRP+M +++   +D+ I+T D+P+ +DP +
Sbjct: 361 ALEKLLKTARRLTPGRLILVFGAGGSADKGKRPLMSEVSSKYSDVVILTSDDPKLDDPAE 420

Query: 428 IRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  ++  G+  F   +   +R EAI  A+ + N+QD++++AG+GHE   I+  GEK++  
Sbjct: 421 ILQDLESGVDKFKPYLVIPDRREAISVALTLANRQDMVLIAGRGHEDFQIL--GEKRIPF 478

Query: 485 -DCDIIREIL 493
            D  ++++IL
Sbjct: 479 NDKQVVKDIL 488


>gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
 gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
          Length = 520

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 166/514 (32%), Positives = 246/514 (47%), Gaps = 59/514 (11%)

Query: 14  LINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           ++ +L +  M   +  ER I  +++DSR +  G +FVAI G   DGH +I +A+  GA A
Sbjct: 19  IVRELDVLEMAGTEDAERMIVSLAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSGAAA 78

Query: 71  IVVSSAYSLQDFSAT-IRSNTPILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSS 128
           ++  +        A  IR       +    +     AS R++      ++ VTGT+GK++
Sbjct: 79  VICEALPEDNGSGAVYIRVADSRRALAAAARAFYRNASERIF------LIGVTGTNGKTT 132

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVS 186
            A  +  +    G+ +  IG T+      +D  L  TTP    L      +   G     
Sbjct: 133 TARLIADMLNSCGIPAGYIG-TNLCRIAGRDISLDRTTPEAHELQALFRRMLDAGCQAAV 191

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL  +H+D+HQT   Y +AK  LF++L P E  A+ 
Sbjct: 192 MEVSSHALVLDRVSGLRFRCAVFTNLSMEHLDFHQTMAGYADAKQILFDQLDP-EGFAVF 250

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------ 300
             DD Y+ ++  R          V    +F      C +  ++++T+   G+ F      
Sbjct: 251 NIDDPYASQMASR----------VAADKRF-----CCTLKPQRELTLRC-GRSFSAAVSS 294

Query: 301 --------DFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   +  FP         LPG + V N L AA +   +GI    V   L K   V 
Sbjct: 295 RTLGSASVELHFPDAVHTVQTELPGMYNVMNLLEAAAVLSGMGIAPGHVAAVLGKPFRVE 354

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPI 401
           GR E +    +    +VDYAHT ++LE  L  +  + S   R++VVFGCGG+RD+ KRP 
Sbjct: 355 GRMERIWDTEKSRCAFVDYAHTPDALEKALSALGELKSSDARLVVVFGCGGNRDRLKRPE 414

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQ 459
           MG+IA + AD   +T DNPR E+PE I  EI  G+ G  +     R EAIR A   L   
Sbjct: 415 MGRIASEKADFVFLTSDNPRDENPEFILDEIECGMEGSNYRRITGREEAIREAAATLLPG 474

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D+L+VAGKGHET   +  G K    D +I+RE L
Sbjct: 475 DILLVAGKGHETYQEIA-GIKHFFSDQEILRECL 507


>gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dyadobacter fermentans DSM 18053]
 gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans
           DSM 18053]
          Length = 491

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 158/481 (32%), Positives = 244/481 (50%), Gaps = 49/481 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +FVA+ G + DGH FI  A   GA AI+       ++    +R +   + V
Sbjct: 33  DSRKVLPGSLFVALRGTQVDGHQFITTAADLGAVAILC------EELPEHVREDITYIQV 86

Query: 96  DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +++   +   A+  YG HP     ++ VTGT+GK+SVA+F+ Q+ +  G  S   G  ST
Sbjct: 87  EDSAAAMGHIAAAFYG-HPSKKVKLVGVTGTNGKTSVATFLFQLFRALGYRS---GLLST 142

Query: 153 ISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           + +  +D  +    TTP  + L   L+ ++++  +HV +E SSH + QHR+ G+    G 
Sbjct: 143 VQNQIEDEVIPSTHTTPDAVALNALLAQMAARNCSHVFMEVSSHSVAQHRITGLHFAGGI 202

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK----RAHNAG 264
           FTN+  DH+D+H+T   Y  AK   F+  LPK + A++  DD     +++    R     
Sbjct: 203 FTNITHDHLDFHKTFDNYIKAKKGFFDA-LPKSAFALVNIDDRRGTVMVQNTKARVETYS 261

Query: 265 CRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            + L+  ++GK I    +  +H   N Q+V            F + G F  YN L   G 
Sbjct: 262 LQTLAT-FKGKIIS-DTLAGMHMDINSQEV-----------WFRVIGRFNAYNLLAVYGA 308

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            + +G     VL  L  L   PGRFE F   +   G   VDYAHT ++LE +L+ I  + 
Sbjct: 309 AVLLGEKEEAVLTELSNLKSPPGRFEQFHSADLIVG--IVDYAHTPDALENVLETITHLR 366

Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +G  +++ V GCGG+RD  KRP M +IA   ++  I+T DNPR EDP  I  ++  G+P 
Sbjct: 367 NGNEQVVTVVGCGGNRDAEKRPKMAEIACRYSNRVILTSDNPRFEDPMDILDQMRKGVPP 426

Query: 439 FIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              K      +R EAI  A       D++++AGKGHE    V  G K    D +++ E+ 
Sbjct: 427 LDYKKTTVIEDRHEAILKAGLEAQPGDIILIAGKGHENYQDV-KGVKHHFDDKEVLMEVF 485

Query: 494 G 494
            
Sbjct: 486 A 486


>gi|255020008|ref|ZP_05292081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970537|gb|EET28026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 478

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 233/476 (48%), Gaps = 31/476 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  + SDSR ++ G +FV +     DG  F+ QA+A GA A ++      +D   T+  
Sbjct: 21  RVCGIESDSRRVRPGQLFVGLHSRHGDGARFLAQALAAGAAAALLQGPELRRD---TV-D 76

Query: 89  NTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P+ V     + L     R Y   G+ P  ++ VTGT+GKSSV   + Q+     + + 
Sbjct: 77  GQPVWVHPEAPRLLGEALRRWYHWQGRAP-GLIGVTGTNGKSSVTWLIAQLAGAEVIGTL 135

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             GP + +   A     TTP+ + L   L     +    +++E SSH L   R+ G+   
Sbjct: 136 GAGPLTALQPLAN----TTPAAVELWSLLGAARQRRAQWLAMEVSSHALALERVAGVPFT 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTNL RDH+D+H +  AY  AK +LF    P    A++ ADD +S E+    H    
Sbjct: 192 AAVFTNLSRDHLDFHGSMAAYGAAKAKLFTN--PALQLAVLNADDPFSAELRTHLH-PDV 248

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R++  G+      +++         + I           PL G     N L A      +
Sbjct: 249 RIVGYGFGAGDYRVREYHPGARATLLVIDTPAGTRPLRIPLMGMANARNFLAALAAVEGL 308

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           G+D  +  + L  L + PGR++ +   + +   + VDYAHT ++L  +L+++RT+  GRI
Sbjct: 309 GMD--VDPQVLAALRLPPGRYQRLSPRTPQQPDVLVDYAHTPDALRQVLEDLRTVAKGRI 366

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            VVFGCGGDRD+GKRP MG +A  LAD  ++TDDNPRSEDP  I AEI+ G+P       
Sbjct: 367 TVVFGCGGDRDRGKRPEMGAVAAALADRVLLTDDNPRSEDPAAIVAEILAGMP-----AG 421

Query: 445 RIEAIRTAIEMLNKQ-------DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R E        + +        D +++AGKGHE     + G K+   D ++    L
Sbjct: 422 RAEVCHDRAAAIARAIGEAEHGDWVLIAGKGHEQTQ-ESAGAKRPCDDVELATRAL 476


>gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
 gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
          Length = 501

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 160/489 (32%), Positives = 243/489 (49%), Gaps = 46/489 (9%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR IQ G +F+A  G   DG  +I  AI +GA  +      + Q +    R   P   
Sbjct: 28  ADSRKIQPGDVFIACQGEYADGRNYIADAITRGASFVYWDDDGAFQ-WQPEWR--VPNQG 84

Query: 95  VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + +  +   + A++ YG    +  I+ VTGT+GK+S+  ++ Q      + + +  P+  
Sbjct: 85  ISDLSQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQWLAQ-----AIDNLEQAPSCA 139

Query: 153 I-----SSF---AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           I     + F    Q    TTP P+ +   +     QG   +++E SSHGL Q+R++G+  
Sbjct: 140 IIGTVGNGFFGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEVSSHGLAQYRVNGVPF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHN 262
               FTNL RDH+DYH +   Y  AK RLF         AII +DDA+   +    + H+
Sbjct: 200 HTAVFTNLTRDHLDYHGSMAEYGAAKERLF--YWQGLQNAIINSDDAFGAALAAELKQHS 257

Query: 263 A-----GC---RVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGE 309
                 GC   +  + G+  +   +   C   N++ ++IS+     EG     L    G 
Sbjct: 258 GSLKTEGCNEVKTYTYGFNEQ-ADICITCFAANREGMSISLATPWGEGSAQTRLL---GR 313

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A G   A G D    L  L ++    GR + +    +   + VDYAHT ++L
Sbjct: 314 FNAQNFAAALGALCAAGYDFQAALTALSRIRPATGRMDCIIQPDKP-LVVVDYAHTPDAL 372

Query: 370 EMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           E  L  +R I     R+  VFGCGGDRD+GKRP+MG++A  LAD A+VT DNPR+EDP+ 
Sbjct: 373 EKALTTLREIQQPESRLWCVFGCGGDRDRGKRPLMGEVAARLADKAVVTSDNPRTEDPQA 432

Query: 428 IRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I A+I+  +  P  +E  +R  AI   I     QD++++AGKGHET   V  G K    D
Sbjct: 433 IIADILPAVPHPALVE-ADRKAAIEQTIAQAQAQDIVLIAGKGHETYQDV-QGVKHHFSD 490

Query: 486 CDIIREILG 494
            ++ ++ LG
Sbjct: 491 FEVAQDALG 499


>gi|187479354|ref|YP_787379.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella avium 197N]
 gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bordetella avium 197N]
          Length = 939

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/451 (33%), Positives = 233/451 (51%), Gaps = 24/451 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +F+A  G + DG  +I  A+  GA  ++    Y     + ++ +++ +L V
Sbjct: 33  DSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVL----YDSDALTQSVVADSRVLPV 88

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              R  L   A   YG+   +  +LAVTGT+GK+S   ++ +   R G     IG   T+
Sbjct: 89  AGLRGMLGELADGWYGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIG---TL 145

Query: 154 SSFAQDN-----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                D       LTTP  I L + ++ +   G   V++EASS GL+Q R+D ++LIA  
Sbjct: 146 GGLLPDGVSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAAG 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           +TNL RDH+DYH T + Y  AK  LF    P    A+I ADDA  + ++ +         
Sbjct: 206 YTNLTRDHLDYHGTMEQYEAAKALLFN--WPGLQAAVINADDAAGRRLLAKLPVGLASAY 263

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           ++ +    +    + A  + Q  T++        +  L G   V N L+ AGL + +G  
Sbjct: 264 AIDHAEADVRAFDLQATAHGQVFTLATSEGQAQVVTGLLGHHNVSNLLLVAGLLLRLGWP 323

Query: 329 SALVLEHLEKLHVVPGRFEFVGT--NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--- 383
            A V   +     V GR + V    +++G  + VDYAHT ++LE  L  +R +   R   
Sbjct: 324 LAAVAREVAAAAPVDGRLQAVAPVGSAQGPLVVVDYAHTPDALERALLALRPVAQARNGA 383

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFI 440
           ++ +FGCGGDRD GKRP MG+IA +LAD  IV+ DNPRSE P+ I  +++ G+       
Sbjct: 384 LVCLFGCGGDRDPGKRPEMGRIAGELADRIIVSSDNPRSEAPQAIIDQVLAGVGPDLALR 443

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            + +R  AI  AI     +DV+++AGKGHET
Sbjct: 444 AESDRALAILHAIWDSWPEDVVLLAGKGHET 474



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 169/393 (43%), Gaps = 36/393 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R + A  IFVAI G   DGH ++ QA A    A     A+ + D      S+ P 
Sbjct: 503 VSTDTRSVAADEIFVAISGENFDGHRYLAQAQAA--GACAAVVAHRVSD------SSLPQ 554

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV+  TR  L   A+    +    ++AVTG++GK++    +  I     L+++Q      
Sbjct: 555 LVLGETRHALGRLATAWRARFSLPVIAVTGSNGKTTTKEMISAI-----LAAWQGEAHRL 609

Query: 153 ISSFAQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            +S   +N +  P  +   +    + +   G+ H    A    + Q     + L+     
Sbjct: 610 ATSGNFNNDIGLPLTLLRLREGYRAAVVELGMNHPGEIAYLAPMAQAS---VALV----N 662

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N  R+H ++    +A       +    LP++  A+   DD Y+    + A     RVL  
Sbjct: 663 NAQREHQEFLHGVEAVARENGAVLSA-LPEDGVAVYPGDDVYTPIWDELA--GARRVLRF 719

Query: 271 GYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G Q G  ++ +K+    +     +       D + P+PGE  + NAL A    +A G   
Sbjct: 720 GLQPGLDVYAQKIRPDASGTLCQVVTPMGVADIVLPVPGEHNLRNALAAIACALAAGAPL 779

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVV 387
           A  +  LE    V GR +   T++  G I +D  + +N  S+ + ++ +  +   R++V+
Sbjct: 780 ASAVRALEGFSAVKGRMQRKETSN--GTILIDDTYNANPDSVRVAIEVLAQLPGPRVLVL 837

Query: 388 FGCGGDRDQGKRPIM----GKIALDLADIAIVT 416
              G   D+G  P M    G  A D    A+VT
Sbjct: 838 GDMGEVGDEG--PAMHREVGGYARDQGIDAMVT 868


>gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis
           HAW-EB4]
          Length = 488

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 230/459 (50%), Gaps = 12/459 (2%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + +E++ DSR +Q+G +FVAI G + DG  FI  A  +GA A++V +    +       +
Sbjct: 18  EFSELTLDSRAVQSGSLFVAIPGYQVDGRKFITAAFERGASAVLVHTDSPEEHGKLVHEA 77

Query: 89  NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              IL     R+ +S  A++ Y   +    I+ VTGT+GK+SV   + Q+    G  +  
Sbjct: 78  GLQILFFQLNRQ-ISALAAQAYPLSQVRPQIIGVTGTNGKTSVTQLIAQLQLLQGKQTAV 136

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +     D+  TT  PI L K L     +G    ++E SSHGL Q R++ +   
Sbjct: 137 MGTLGNGLWGELVDSGNTTADPITLIKQLQNFEQRGADTCAMEVSSHGLVQGRVEAVPFD 196

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH T  AY  AK RLF+         +I  DDA  +E +    +   
Sbjct: 197 VAVFTNLSRDHLDYHHTMDAYGAAKKRLFQ--FATLRAGLINCDDALGREWLTDLASDKV 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              S+    K     K C  H+     T+     +     PL G+F + N L A G    
Sbjct: 255 IGFSIKGDSKAAIYCKDCHFHDGGVSCTLVWPTGEAKLNSPLLGDFNLSNLLAALGALYL 314

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G D   ++   EKL  V GR E   T      + VDYAHT +++E  LK +R    G++
Sbjct: 315 LGEDMHALVALAEKLEPVAGRMERFTTKDEV-TLVVDYAHTPDAIEQALKALRVHCKGKL 373

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441
             VFGCGGDRD+GKRP+M   A   AD  +VT DN RSEDP  I A+I+ G+      + 
Sbjct: 374 WCVFGCGGDRDRGKRPMMAASAEQFADRVMVTSDNSRSEDPNAIIADILAGLQHPKNALT 433

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           + +R  AI+  +      D++++AGKGHET   + NGE+
Sbjct: 434 QVDRQTAIKDVVAQAVAGDMVLLAGKGHETYQEI-NGER 471


>gi|167465143|ref|ZP_02330232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 460

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 236/463 (50%), Gaps = 53/463 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ V  DSR I+ G +F+ I G   DGH F  +A+  GA A+VV     +         
Sbjct: 22  EVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAVALVVERRLDV--------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N P ++V  TR  ++LFA+  YG   H   I+ VTGT+GK++    ++QI +  G  +  
Sbjct: 73  NVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTTTYLIEQILRDQGFITGL 132

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     I S       TT   + + K L+ +  +   +  +E SSH LD  R+ GI   
Sbjct: 133 MGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVMEVSSHALDFGRVKGIPFR 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMK 258
           +G FTNL +DH+DYH+T   Y  AK +LF  +         + S AI+  DD  S E  +
Sbjct: 193 SGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEKQRSYAILNVDDEAS-ETFQ 251

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGE 309
           R  +A   V++ G       ++K C +     + I+ EG +F         +    L G+
Sbjct: 252 RLTSA--EVITYG-------IEKECDVR-ASNIRITAEGTEFTLTTFEGTENIRMKLVGK 301

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F VYNAL A    +A GI    + + L ++  VPGR E V +  +   + VDYAHT + L
Sbjct: 302 FNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEVV-SEGQDYLVLVDYAHTPDGL 360

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  ++    G +  VFGCGGDRD+ KRP+MGK+    +D   VT DNPR+EDP  I 
Sbjct: 361 ENTLSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKYSDHLFVTSDNPRTEDPAAIL 420

Query: 430 AEIIHGIPGFIEKG---NRIE-------AIRTAIEMLNKQDVL 462
            +I   +PG +E G   +R E       AI+ AIE+ + +DV+
Sbjct: 421 EDI---VPGIVEAGLSEDRFEIIVDRRLAIQKAIEVASPKDVV 460


>gi|293376046|ref|ZP_06622299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|292645347|gb|EFF63404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
          Length = 485

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 241/468 (51%), Gaps = 29/468 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L  + ++   ++I  +  DSR +  G +F AI G   DGH +I  A+  GA A+V  
Sbjct: 8   MSELLGYTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGE 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
            +         +        V NT+K L++ +S+ YG+  +N  ++ V GT+GK+++   
Sbjct: 68  ES---------LNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTITYL 118

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH----VSVE 188
           +Q + +  G+ S  IG   +     +    TTP    L+  L+ L  +GV H    V +E
Sbjct: 119 IQHVFECLGIDSGLIGTNGSWVGQKKKASRTTP----LSPDLNELLQEGVRHNLPYVVME 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAII 246
            SSHG+ ++R+D +      FTN+  +H+DYH+T + Y   KMR F +      +  AII
Sbjct: 175 VSSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD ++   +   ++   ++L+ G Q K  I  K +     +   ++ V+G+       
Sbjct: 235 NCDDEHASSFISVTNS---KILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTI 291

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G++ VYN L       ++G     ++  +E + V+ GRFE++   S G  + +DYAH
Sbjct: 292 PLFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPS-GVTVVIDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +++  +L  +  I++G II V G GG+RD+ KR IMG+ A  L+D    T DNPR+ED
Sbjct: 351 NPDAIFQVLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVFFTSDNPRNED 410

Query: 425 PEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           P  I  +++ G     +    +R +AI  A++     D +V+ GKGHE
Sbjct: 411 PLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHE 458


>gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
 gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
          Length = 498

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 231/456 (50%), Gaps = 23/456 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +++++DSR    G +F A  G + DG  F+  A+  GA A++         F A   +  
Sbjct: 18  DDITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDG---DGFCAPALA-V 73

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   V   R+     A  L+G+  +++    VTGT+GK++V+  + +     G     +G
Sbjct: 74  PGFGVRGLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVG 133

Query: 149 PTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                   A +  L TTP  + L +  +   +QG    ++E SS GLDQ R++G +    
Sbjct: 134 TLGCGFPDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY  AK RLFE   P+ S  +I  DD +   + +R    G  V
Sbjct: 194 IFTNLSRDHLDYHGTMEAYAAAKARLFER--PELSACVINIDDPWGLALARRLVVEGRAV 251

Query: 268 LSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           ++              + +   ++ A     + T+  EG++ +    +   F V N +  
Sbjct: 252 IACTLYAANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAV 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR- 377
           AG  +A GI    +   L +L    GR + VG       + +DYAH+ ++L  +L+ +R 
Sbjct: 312 AGALLARGIAFDELPPVLGRLAPPQGRMQLVGGVCEP-LVVIDYAHSPDALAKVLEALRG 370

Query: 378 TITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           T+ S  GR++ VFGCGGDRD GKRP+MG+IA  +AD  ++T DNPRSEDP++I   I  G
Sbjct: 371 TVHSRRGRLVCVFGCGGDRDPGKRPMMGEIASAIADRVVITSDNPRSEDPQRIVEAIAAG 430

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                E   +R +AI  A+      DV+++AGKGHE
Sbjct: 431 AGAAAECVVDRAQAITRAVGEARADDVVLIAGKGHE 466


>gi|119717292|ref|YP_924257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
 gi|119537953|gb|ABL82570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
          Length = 504

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 246/478 (51%), Gaps = 30/478 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +S  S+ I+ G ++ A+ G++  G  F   A+A GA A+    A + +  +     
Sbjct: 35  EVSGISLSSQRIRPGDLYAALPGSRAHGIEFAQDALAAGAVAVFTDEAGADRGPA----- 89

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
             P LVVD  R  L   ++R+YG+   ++  V  T  +    +   ++   Q++G+ +  
Sbjct: 90  GAPHLVVDRPRAVLGRLSARIYGEPAASMRMVGVTGTQGKTTTTRLLEAGLQQAGVPAAV 149

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   T I+     + LTTP    L    + +  + V   ++E SSH L   R+DG+   
Sbjct: 150 VGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRACAMEVSSHALVMGRVDGVVFD 209

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAG 264
              F NLGRDH+D+H+  + Y+ AK  LF    P+ +  A++  DDA+ + + + A    
Sbjct: 210 VAVFLNLGRDHLDFHRDLEDYYAAKASLF---TPERARFALVNVDDAHGRRLAEEA-TVP 265

Query: 265 CRVLSVG---------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            R  S+G         ++   + L+        + V ++ +G+       LPG+F V N 
Sbjct: 266 VRTFSMGRGDDAQRADWRAVDVRLRAT----GSEFVVVAPDGRRIPAGCALPGDFNVANT 321

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A       G+D A+V   +     VPGR E V    +   + VDYAH  +++E  ++ 
Sbjct: 322 LAAVAAAAEAGLDPAVVAAGIAAAGGVPGRLERVDAG-QDFLVVVDYAHKPDAVEAAIRT 380

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R +T GR+IVV G GGDRD GKRPIM  IA  LAD+ +VTDDNPR+EDP  IRA ++ G
Sbjct: 381 LRPLTEGRVIVVLGAGGDRDPGKRPIMAGIAARLADLLVVTDDNPRTEDPAAIRAAMLAG 440

Query: 436 I--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +     IE G R  AIR A+      D++++AGKGHET   V +G      D +++RE
Sbjct: 441 VVTGQAIEVGGRRAAIREALRRAGPGDIVLIAGKGHETGQEV-DGVVHPFDDREVVRE 497


>gi|325844613|ref|ZP_08168256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|325489038|gb|EGC91425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 483

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 241/468 (51%), Gaps = 29/468 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L  + ++   ++I  +  DSR +  G +F AI G   DGH +I  A+  GA A+V  
Sbjct: 6   MSELLGYTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGE 65

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
            +         +        V NT+K L++ +S+ YG+  +N  ++ V GT+GK+++   
Sbjct: 66  ES---------LNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTITYL 116

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH----VSVE 188
           +Q + +  G+ S  IG   +     +    TTP    L+  L+ L  +GV H    V +E
Sbjct: 117 IQHVFECLGIDSGLIGTNGSWVGQKKKASRTTP----LSPDLNELLQEGVRHNLPYVVME 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAII 246
            SSHG+ ++R+D +      FTN+  +H+DYH+T + Y   KMR F +      +  AII
Sbjct: 173 VSSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAII 232

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD ++   +   ++   ++L+ G Q K  I  K +     +   ++ V+G+       
Sbjct: 233 NCDDEHASSFISVTNS---KILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTI 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G++ VYN L       ++G     ++  +E + V+ GRFE++   S G  + +DYAH
Sbjct: 290 PLFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPS-GVTVVIDYAH 348

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +++  +L  +  I++G II V G GG+RD+ KR IMG+ A  L+D    T DNPR+ED
Sbjct: 349 NPDAIFQVLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVFFTSDNPRNED 408

Query: 425 PEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           P  I  +++ G     +    +R +AI  A++     D +V+ GKGHE
Sbjct: 409 PLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHE 456


>gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 502

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 231/463 (49%), Gaps = 31/463 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  + +DSR I+ G +FV + G   DGH +I  AI  GA AI+             +  
Sbjct: 22  EITNLDTDSRAIRPGGLFVCVPGFNVDGHDYIEHAIQNGAVAIMAEKEL------PELPG 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N   + V +TR+ L + A+  +G   E +  + +TGT+GK++    V ++   S   +  
Sbjct: 76  NITRITVPDTRRVLPILANSFFGNPTEQLKLIGITGTNGKTTTTHMVDKVLNDSNRKTGI 135

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I    +    TTP  I L +    + + G T+  +E SSHGLD  R+ G    
Sbjct: 136 IGTLYMKIGDHVEKTLNTTPDTIQLQRYFHAMVAHGGTYGVLEVSSHGLDMGRVRGCDFQ 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVMKRAH 261
              FTNL  DH+D+HQ  ++Y N K  LF +L       +   ++ ADDA S    KR  
Sbjct: 196 TVVFTNLSHDHLDFHQNMESYRNTKELLFTQLGNSDRDMQKKVVLNADDAASSYYGKRT- 254

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNAL 316
               ++++ G          V A+H +      +  +       DF   + G   VYNAL
Sbjct: 255 --SAQIVTYGIHNP----ADVRALHIQNTGDGCRFIVETPWGSSDFTMKVYGVHNVYNAL 308

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   C+  GI    +   L+    V GRF+ + T+ R  R+ VDYAH  + L+  L + 
Sbjct: 309 AAITTCLLEGIPIQEIRNSLQDFAGVHGRFQEIKTD-RSFRVVVDYAHNPDGLKATLLSA 367

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           + ITSG++I V GC G+RD+ KRPIM  IA   +D  + T DNP SEDPE+I AE++ G+
Sbjct: 368 KEITSGKMICVMGCRGERDRLKRPIMADIAASYSDYVLFTTDNPFSEDPEQIIAEMLGGL 427

Query: 437 P-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                  +    NR +AI+ A+EM   QD +++ G+GHET ++
Sbjct: 428 SSHHAVNWEVVPNRKDAIQRAVEMAGDQDRIIITGRGHETRYV 470


>gi|293610702|ref|ZP_06693002.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
 gi|292827046|gb|EFF85411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
          Length = 499

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 240/475 (50%), Gaps = 55/475 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           QW ++     S DSR + +G IF+A+      E    F   A+A GA AI+  S   L  
Sbjct: 16  QWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKTRAFAESALANGALAII--SETELGV 73

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFV--- 133
            +  +RS+         R+ +  +  R Y +H     P  I+AVTGT+GK++++  V   
Sbjct: 74  ANEWVRSDV--------RQRMGEWQER-YLQHIDPVVPVRIIAVTGTNGKTTISRLVAEL 124

Query: 134 ----QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EA
Sbjct: 125 ISSQQQRCAVMGTTGNGILPDLTPSTH------TTLDALQLQNALHDYAKQGATFASLEA 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF         A+I  D
Sbjct: 179 SSHGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FSSLKVAVINLD 236

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---- 305
           D ++  ++  A     +   + Y      L +  A +    ++ S+ G  F+ + P    
Sbjct: 237 DEHAALMINAAKQNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSPQGSF 291

Query: 306 -----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G F V N + A       G +   ++  + +L   PGR + +     G R++V
Sbjct: 292 AVQSPLLGHFNVENLVAALIATEQAGFNLKALVAFVPELIGAPGRMQVI---RDGERLFV 348

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DN
Sbjct: 349 VDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470
           PR+EDPE+I A++  GI     + + I   R AI+ + +Q    D++V+AGKGHE
Sbjct: 409 PRTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHE 463


>gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 544

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 162/497 (32%), Positives = 231/497 (46%), Gaps = 82/497 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ ++ DSR +Q G++F  + G K DGH F   A+ +GA A+VV     +        
Sbjct: 56  QKISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALVVERYVDVDALQ---- 111

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSF 145
                + V +TRK ++  A   YG     +L V  T       +   V+ I    G    
Sbjct: 112 -----IRVPSTRKSMAQAARVFYGSPSSRMLMVGVTGTNGKTTTTHLVEAILVAQGRRVG 166

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     +   A   + TTP  + L   L+ ++ +G   V +E SSH LDQ R+ G+  
Sbjct: 167 LIGTNGNRLGDKAWPAQHTTPESLDLQALLAEMADEGADAVVMEVSSHALDQLRVLGVDF 226

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-----------PKESP---------- 243
               FTNL +DH+DYH+T + Y +AK  LF  L            P  +P          
Sbjct: 227 DLALFTNLTQDHLDYHETLERYRDAKGMLFRALTGEMKGGKGASSPGSAPEATTLQGVPK 286

Query: 244 -AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-- 300
            AII ADD           NAG           FI       I    +    ++G+D+  
Sbjct: 287 RAIINADDP----------NAGF----------FIAASAAPVITYGIEADAMIKGRDWAV 326

Query: 301 -------DFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                  D L+P         L G F + NAL A     A+GID   +   L  +  V G
Sbjct: 327 TPHGLTCDVLYPGGEVRLNLQLTGRFNLSNALAAFAAGWAVGIDPEAIAAALGAVTGVAG 386

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           RFE +    +   + VDYAHT + LE +L   R +  GR+I VFGCGGDRD+ KRP MG 
Sbjct: 387 RFERIDLG-QPFSVIVDYAHTPDGLENVLVTARALARGRVITVFGCGGDRDRTKRPKMGA 445

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNK 458
           +   L+D+AIVT DNPR+EDP +I  +I   +PG  + G      +R  AI  A+ +   
Sbjct: 446 VVARLSDVAIVTSDNPRTEDPRRIIEDI---LPGLADAGDVHVEPDRSSAIALALSLAQP 502

Query: 459 QDVLVVAGKGHETVHIV 475
            D++++AGKGHE+  IV
Sbjct: 503 GDLVMIAGKGHESYQIV 519


>gi|325123730|gb|ADY83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 499

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/474 (32%), Positives = 237/474 (50%), Gaps = 53/474 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           +W ++     S DSR + +G IF+A+      E    F   A+A GA A++  +   + +
Sbjct: 16  KWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKTRAFAESALANGALAVISETELGVAN 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVA------- 130
                       V  + R+ +  +  R   +     P  I+AVTGT+GK++++       
Sbjct: 76  E----------WVCSDVRQRMGEWQERYLQRIDLVVPVRIIAVTGTNGKTTISRLVAELI 125

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           SF QQ C   G +   I P  T S+       TT   + L  AL   + QG T  S+EAS
Sbjct: 126 SFQQQRCAVMGTTGNGILPDLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF         AII  DD
Sbjct: 180 SHGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FSSLKVAIINLDD 237

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----- 305
            ++  ++  A     +   + Y      L +  A +    ++ S+ G  F+ + P     
Sbjct: 238 EHAALMINAAKQNPAQPKILTYS-----LTQNTADYYITDLSYSLVGATFNLVSPQGSFA 292

Query: 306 ----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV- 360
               L G F V N + A       G D   ++  + +L   PGR + +     G R++V 
Sbjct: 293 VQSPLLGHFNVENLVAALIATEQAGFDLKALVAFVPELIGAPGRMQVI---RDGERLFVV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNP
Sbjct: 350 DYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470
           R+EDPE+I A++  GI     + + I   R AI+ + +Q    D++V+AGKGHE
Sbjct: 410 RTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHE 463


>gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
 gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
          Length = 486

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 237/464 (51%), Gaps = 36/464 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR I+A   F+ I G   DGH F  QA  QGA  I+     ++         N
Sbjct: 23  IEHLTIDSRDIKANSAFICIKGYTVDGHDFAQQAANQGATLIITEKPMTI--------DN 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVA----SFVQQICQRSGL 142
             ++ V++T + L L A++ Y  +P  +L    VTGT+GK+SVA    S + ++ ++S L
Sbjct: 75  ATVVEVESTSRTLGLLAAKFY-DYPSKLLHMIGVTGTNGKTSVAGILHSMLMELGEKSAL 133

Query: 143 SS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +    F +      S+   ++ LTT   I  A+       +  +H+++E SSHGL   RL
Sbjct: 134 TGTIGFNLNGQLHPSANTTNDVLTTQQMIARAR------DEDCSHMTMEVSSHGLVLGRL 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256
            G++     FTNL  DH+D+H T + Y +AK  LF +L   L  +  AI+ ADD +SKE+
Sbjct: 188 AGVEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQLGQDLANQKQAILNADDPWSKEL 247

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K   +    V + G Q       K +  +H     T++    +F     L GEF V NA
Sbjct: 248 AKMTPHP---VYTYGIQNDAQFQAKNIQLMHTGTSFTLTCVEGEFPVTMKLLGEFNVSNA 304

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L +     A G     +L+ L K+  V GR + V   +    I++DYAHT +++E  +  
Sbjct: 305 LASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEAP-ISIFIDYAHTPDAIEKAIDA 363

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++     RII + G GG+RD+ KRPIM   A  +AD  ++T D+PR E  + I  ++  G
Sbjct: 364 VQDFKKSRIIFLVGTGGNRDKTKRPIMAAKA-SIADYVVLTTDDPRDEAYDSILGDLEVG 422

Query: 436 I--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +    F   G+R +A+  A+E     D++++AGKGHE   I+ N
Sbjct: 423 MTHSNFACIGDRAKAVEHAVEQAEAGDIIILAGKGHEDYQIIGN 466


>gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
 gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase; AltName: Full=D-lysine-adding enzyme; AltName:
           Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
          Length = 490

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 242/483 (50%), Gaps = 45/483 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+ S  ++ G +F+   G K D H  IP+ + +GA A+VV     L DF      
Sbjct: 24  EITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEREIDL-DF------ 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P + V ++R F +  AS  +    +++L    T       + +      + L      
Sbjct: 77  --PYIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHMLTSLGERGSV 134

Query: 149 PTSTI-----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            T+ +     +S+  D  +TTP  I +  A+      G    ++E SSH L Q R++G++
Sbjct: 135 LTTAVKRILGNSYYDD--ITTPDAITILSAMKENREGGGKFFALEVSSHALVQQRVEGVR 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTN+ RDH+D+H T + Y  AK+ LF+ LL  +  A++        E +  A N 
Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGVAVL-------NESLADAFNR 244

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314
             R ++ G            A +    + +S EG  F    P           G+F  YN
Sbjct: 245 KSRKITFGTSKN--------ADYRLGNIEVSWEGTQFVLETPDGLLKVFTRAIGDFNAYN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMIL 373
           A  A      +G D   +   LE    V GRFE V G    G  + VD+AH+ ++LE +L
Sbjct: 297 AAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLL 356

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           KN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LAD+ I+T D+PR EDPE+I  ++I
Sbjct: 357 KNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPRGEDPEQIMEDLI 416

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   I+   +K    D +++ 
Sbjct: 417 KGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFQDREVVE 476

Query: 491 EIL 493
           EI+
Sbjct: 477 EII 479


>gi|197285922|ref|YP_002151794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227356429|ref|ZP_03840817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
 gi|194683409|emb|CAR44155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227163539|gb|EEI48460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
          Length = 495

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 159/501 (31%), Positives = 245/501 (48%), Gaps = 26/501 (5%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P L + L    +Q     + +++ DSR   +G +FVAI G++ DG  +IPQAIAQG  A+
Sbjct: 4   PNLSDLLGALGIQAPSLTLKDMTLDSRKAASGDLFVAIKGHETDGRRYIPQAIAQGVCAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +  +               P++ ++N    LS  A   Y   P N L + G +G +   +
Sbjct: 64  LAEAEGIATHGEIRESHGIPVIYIENLNCQLSKLAGIFY-HQPANKLKLIGVTGTNGKTT 122

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVT 183
             Q + Q +      +G  S +     +  L        TT S + +   L  L +QG T
Sbjct: 123 TTQLLAQWAQ----GLGEVSAVMGTVGNGLLDHIVPAMNTTGSAVDIQLELQQLVNQGAT 178

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             ++E SSHGL Q R+  +  +A  FTNL RDH+DYH     Y  AK  LF      E  
Sbjct: 179 FTAMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEQAKWLLFSTHHSGEK- 237

Query: 244 AIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            II ADDA   + +    +A        L   +QG+++   ++        +  +    +
Sbjct: 238 -IINADDAVGHKWLTHLPDAVAVTMADKLPANWQGRYVQATQINYHDAGATIHFNSSWGE 296

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PL G F V N L A    +A+      V++    L  V GR E    ++R   + 
Sbjct: 297 GEIESPLMGAFNVSNLLCALATLLALEYPLDAVIKASSALTPVCGRMEVFSADNRP-TVI 355

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L+  R   +G++  +FGCGGDRD+GKRP+MG +A   AD  ++TDDN
Sbjct: 356 VDYAHTPDALEKALQAARLHCTGKLWCIFGCGGDRDKGKRPLMGAVAEQFADKVVITDDN 415

Query: 420 PRSEDPEKIRAEIIHGI--PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PRSE+P+ I  +I+ G+  PG  +    R EA+   +   +  D+++VAGKGHE   IV 
Sbjct: 416 PRSEEPQAIIQDILSGLMDPGRALAIEGRAEAVTNVVMQASPADMILVAGKGHEDYQIV- 474

Query: 477 NGEKKMSV-DCDIIREILGLI 496
            G +++   D   +  +LG+I
Sbjct: 475 -GTRRLDYSDRLTVARLLGVI 494


>gi|159038983|ref|YP_001538236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
 gi|157917818|gb|ABV99245.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
          Length = 515

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 233/465 (50%), Gaps = 42/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  V+  S+ ++ G ++ A+ G +  G  F+P A   GA A++   A +    SAT 
Sbjct: 39  EPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVPAAARAGAVAVLTDPAGA----SATA 94

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           ++  P+LVV + R  L   AS +YG       ++ VTGT+GK+S A  V+   + +G  +
Sbjct: 95  QAGLPMLVVPDPRAVLGDLASAVYGDPTAGLAVIGVTGTAGKTSTAYLVESGLRAAGHVT 154

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   T +   A D+  TTP    L   L+    +GVT V +E SSH L   R+ G++
Sbjct: 155 GLIGTVETRLGDLAMDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHALAMGRVGGVR 214

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAI--IY--ADDAYSK 254
              G +TN G DH+D+H     YF AK +LF+     E+L  + PA+  +Y  A   YS 
Sbjct: 215 FTVGGYTNFGSDHLDFHVDSADYFAAKAKLFDGRCEVEVLNHDDPALRPLYRQATVTYSA 274

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              + A      V   GY  +F        +H    + +            LPG   V N
Sbjct: 275 AGDRSATWWADAVGGEGYAQRFT-------LHGPDGLALPAG-------VALPGRHNVAN 320

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNSLEMI 372
           AL+A  + +A G+D+      +     VPGR E V      RG    VDYAH ++++   
Sbjct: 321 ALLAIAVLVAAGVDAKTAAAGVAACGGVPGRLELVRAPGPVRG---VVDYAHKTDAIVAA 377

Query: 373 LKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           L  +R   +GR +I + G GGDRD+GKRP+MG  A + AD+ +VTDDNPR+E+P +IRAE
Sbjct: 378 LAALREFGAGRRLICLLGAGGDRDRGKRPLMGIAAAEGADVVVVTDDNPRTEEPAEIRAE 437

Query: 432 IIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++ G          +E   R  AI  A+ +    DV+ + GKGHE
Sbjct: 438 VLAGAYRAGTDARVLEVPGRRAAIAEAVRLAEPGDVVALLGKGHE 482


>gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 511

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/492 (27%), Positives = 246/492 (50%), Gaps = 37/492 (7%)

Query: 13  ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L++ + I P +   + +IN +S +S+ +Q G +F+ + G   DG  +  +AI  GAEA 
Sbjct: 8   KLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAA 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           ++ SA   ++   +I     +++ DN         +  + +    +  + VTGT+GK+++
Sbjct: 68  IIGSAA--KEKIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ + ++ G  +   G   +    F++    TT     L K L+           +E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246
            SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+   ++
Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGICVL 245

Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTI 293
             DD +    S ++ KR+     ++    ++          KF  +   C  H  ++   
Sbjct: 246 NHDDHWISKLSSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPRE--- 302

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                      PL GEF + NA+ A  +   +      + + ++     PGR E +  ++
Sbjct: 303 -----KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDN 357

Query: 354 RG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                    + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +
Sbjct: 358 NDVSRSLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEE 417

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +D   +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+   K+D++++A
Sbjct: 418 FSDQLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFAKKKDIVLIA 477

Query: 466 GKGHETVHIVTN 477
           GKGHE   I+ +
Sbjct: 478 GKGHEDYQILND 489


>gi|134102304|ref|YP_001107965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914927|emb|CAM05040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 522

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 230/460 (50%), Gaps = 25/460 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----YSLQDFS 83
           R +   +  ++H++ G +F A+ G +  G  F   A+  GA A++   A      L D  
Sbjct: 25  RPVTGATLRAQHVRPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHP 84

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
                   +LV D+ R  L   A+++YG+  +   IL VTGTSGK++    ++     +G
Sbjct: 85  EVSAGRVALLVHDDPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAG 144

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++  +G   T I+    D+  TTP    L   L+ +   GVTHV +E SSH L   R+ 
Sbjct: 145 FTTGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVS 204

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G +   G FTNL +DH+D+H+    YF AK  LF+     E   ++  D  + ++++K  
Sbjct: 205 GTRFTVGGFTNLSQDHLDFHRDLDDYFQAKALLFDGRSEHE---VVCTDTDWGRKLVK-- 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAA 319
              G   +S      +           +Q+ T    G         LPG F + NAL+A 
Sbjct: 260 --PGTITVSTTGDASWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAI 317

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+  A  + +  +   L ++ V PGR E V        + VDY+H   ++  +L   R  
Sbjct: 318 GILHAAEVPTWAIERGLAEVDV-PGRMERVALGQDFTAV-VDYSHKPGAVSAVLDAARAQ 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---I 436
             GR+IVV GCGGDRD  KRP+MG+ A   + + IVTDDNPRSEDP  IRA ++ G   +
Sbjct: 376 AEGRVIVVLGCGGDRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAV 435

Query: 437 PG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P       IE+G+R EAI  A+   +  D++VVAGKGHET
Sbjct: 436 PAAERGEVIERGDRREAIAEAVARASSGDIVVVAGKGHET 475


>gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7424]
 gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424]
          Length = 496

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 178/333 (53%), Gaps = 19/333 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TTP    L + L+     G  +  +E SSH L Q R+ G       FTNL +DH+D+H+ 
Sbjct: 159 TTPFATELQEQLAQAVKAGSEYAVMEVSSHALAQRRVAGCPFEVAVFTNLTQDHLDFHKD 218

Query: 223 QQAYFNAKMRLFEELLPKESP------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            + YFNAK  LF       SP      AII  DD Y + ++           SV      
Sbjct: 219 MEDYFNAKALLF-------SPDYLTGRAIINLDDPYGQRLINSLSGEKVWSYSVNNPDAN 271

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            + K +    N     +     + +F  PL G++ + N L A G  + +G+D   ++E L
Sbjct: 272 FYTKDLTYEANGVSGILHTPIGEVNFYSPLVGQYNIANLLAAVGAVVHLGVDLKSIVESL 331

Query: 337 EKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
                VPGR E V  + +    + VDYAHT +SLE +LK  R    G++I VFGCGGDRD
Sbjct: 332 PLFSAVPGRMERVKISDKQDISVIVDYAHTPDSLENLLKAARPFIEGKMICVFGCGGDRD 391

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTA 452
           + KRP MGKIA +LAD+A+VT DNPR+E+PE+I  +I+ GIP  ++     +R EAIRTA
Sbjct: 392 RTKRPKMGKIAAELADLAVVTSDNPRTENPEQILEDILAGIPQSVKPVVISDRAEAIRTA 451

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I      D +++AGKGHE   I+  G +K+  D
Sbjct: 452 IMDAKPGDGVLIAGKGHEDYQIL--GTEKIHFD 482


>gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
          Length = 477

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 232/446 (52%), Gaps = 15/446 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +++ +S+ ++ G IF+AIVG + DG  +I +AI   A A++  SA    ++S     N P
Sbjct: 14  DLTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESA----NYSKNKAWNVP 69

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ++N  + ++  A  L+ ++P     ++ VTGT+GK+SV  ++QQ       S+  IG
Sbjct: 70  SFGIENLNQKIAEIA-ELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIG 128

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              +     +    TTP  I L + L+    +G+ + ++E SSH + Q+R+  I      
Sbjct: 129 TLGSGEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNRIANIVFDIKV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH--NAGCR 266
            TN+ RDH+DYH+T   Y   K + F +   K    I+  DD   +E++           
Sbjct: 189 LTNVTRDHLDYHKTLANYQKIKKQFFSDGECKN--FILNIDDCIGQELLMEVDWSEKNLT 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++  Q   I  + +     K    +  + K ++    + G   VYN L   G  +   
Sbjct: 247 TYAIDVQADLIA-QNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQ 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRII 385
                +++ +E L  +PGR E +  +  G  R+ +DYAHT ++L+ +L+++R I+   II
Sbjct: 306 FSIDQIIKAIELLKSIPGRNEIIQVSKEGWPRVVLDYAHTPDALKNVLQSLRAISDNEII 365

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGN 444
           ++FGCGG+RD+GKR  M  +A + AD  IVT DNPR EDP +I  +I   I    +   +
Sbjct: 366 LLFGCGGNRDKGKRRKMALVANEYADKVIVTTDNPRYEDPLEIIKDITKNITTSHVVIES 425

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           R +AI+ AI M+ +  +L++AGKGHE
Sbjct: 426 REQAIKKAIGMMEENSILLIAGKGHE 451


>gi|88858797|ref|ZP_01133438.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
 gi|88819023|gb|EAR28837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
          Length = 489

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/472 (32%), Positives = 242/472 (51%), Gaps = 27/472 (5%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F +      +  +  DSR I+ G  F+AI G+ +DG LF+  A+A GA   +V    
Sbjct: 9   LARFAISHESIDVQHLVLDSRKIKTGDAFIAIKGHSQDGGLFVESALANGAAIALVD--- 65

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
             +    T  S+  I V    +K L+  +++ YGK  E +  + VTGT+GKS++ S +  
Sbjct: 66  --EQCECTFASDKIIRVAQLDKK-LAQLSAQFYGKPSEELALIGVTGTNGKSTITSMIAY 122

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + Q  G  S  IG       +   ++L     TTPS + L   L  L       V++E S
Sbjct: 123 LAQVCGSKSAVIGTLG----WGHPDKLNALANTTPSSVELQAILGQLHQASHQVVAMEVS 178

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL Q R+   +  A  F+NL RDH+DYH   Q+Y +AK+ LF E  P+ S  +I  DD
Sbjct: 179 SHGLVQGRVACTRFKAAVFSNLSRDHLDYHGDMQSYADAKLMLFTECNPEIS--VINQDD 236

Query: 251 AYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +K  + +       V   G    + G+++    V    +           + +   PL
Sbjct: 237 EVAKLWLMQPELMDAVVYGQGKTTTHTGRYVLFDDVQYSGDGLSAQFYTSWGNTEIKCPL 296

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F +YN   A    +A+G    L+ + + KL  V GR +     ++   + VDYAHT 
Sbjct: 297 YGQFNLYNLAAAFATLLALGYSIDLLAQAVSKLSPVAGRMQPFSEANKPTCV-VDYAHTP 355

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L + L+ ++    G++  VFGCGG+RD+GKR +M + A   A+  IVT DNPR+EDP+
Sbjct: 356 DALALALQALQLHVPGKVTCVFGCGGNRDKGKRALMAQAAERFANKIIVTSDNPRNEDPK 415

Query: 427 KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            I A+I+ G       + + +R +AI+ AIE    ++V+++AGKGHE   ++
Sbjct: 416 AIIADILAGFNDTTHVLSEEDREQAIKMAIEQAEPEEVILIAGKGHEDYQLI 467


>gi|169629088|ref|YP_001702737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium abscessus ATCC 19977]
 gi|169241055|emb|CAM62083.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Mycobacterium
           abscessus]
          Length = 515

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 232/458 (50%), Gaps = 24/458 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+  ++  + G +F A+ G    G  F  +A++ GA A++  +A +  +  A    +
Sbjct: 37  VGGVTLRAQDARTGDLFAALPGTSTHGAQFASEAVSAGAAAVLTDAAGA--ELVAGQGLD 94

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQI 147
             +LV    R  L   A+ +YG+   ++  V  T       +   V+   + +G     I
Sbjct: 95  IAVLVHPVPRSVLGELAATVYGEPSRHLQVVGVTGTSGKTTTTYLVEAGLRAAGKRVGLI 154

Query: 148 GPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           G T  +    +D  + LTTP    L + L+ +  +GV  V +E SSH L  +R+DG +  
Sbjct: 155 G-TVGVRIDGEDVPSALTTPEAPALQELLAEMVQRGVDTVVMEVSSHALALNRVDGTRFA 213

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAG 264
            G+FTNL RDH+D+H   Q YF  K RLF    P+ +  +++  DD   + + + A  AG
Sbjct: 214 VGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRSVVCIDDDAGRAMAELAREAG 273

Query: 265 CRVLSVGYQGKFI---HLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             V +V      +       V   H+  Q+   +   +D +    LPG + V N LVA  
Sbjct: 274 PDVTTVSSLDGGVADWRCSNVAVGHDGGQRFVANGPDRDTELTIALPGHYNVANCLVAIA 333

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIR 377
           +   +G+ +A     +    V PGR E V      G+ +   VDYAH   +L  +L+++R
Sbjct: 334 ILDVLGVSAATAAPGIATAGV-PGRMEAVAA----GQPFLAVVDYAHKPGALRAVLESLR 388

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +   GR+ VVFG GG+RD+GKR  MGK+A +LAD+ +VTDDNPR+E+P  IR EII G  
Sbjct: 389 SHRDGRLAVVFGAGGNRDRGKRADMGKVAAELADLVVVTDDNPRNEEPAAIRTEIISGTT 448

Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G     IE G+R  AI  A       D ++VAGKGHE+
Sbjct: 449 GSEAQIIEIGDRRAAIDFATLWARPGDTVLVAGKGHES 486


>gi|94970661|ref|YP_592709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552711|gb|ABF42635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 509

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 160/496 (32%), Positives = 250/496 (50%), Gaps = 50/496 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           DF +LI+   I         I+ V  DSR ++ G+ F+A+ G+  DG+ +I +AI  GA 
Sbjct: 2   DFFQLIDGAEILSCSGNA-GIHGVEYDSRRVKPGFCFLAMRGDSTDGNRYIDKAIELGAV 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AIV  SA  +       R      +  + R+ LS  ++  Y KHP   LA+TG +G +  
Sbjct: 61  AIVTDSATEIP------RPGVAWAICAHGRRALSRLSANFY-KHPAEKLAITGVTGTNGK 113

Query: 130 AS---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
            +    +  + + +G  +  IG   T+     D  +    TTP P+ L +      ++G 
Sbjct: 114 TTTTYILDSLLRHAGRKTAMIG---TVEYHIADRVIPAPHTTPEPLELNQIFREALNEGA 170

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T   +E SSH L Q R+ GI      FTNL RDH+D+H T ++YF +K  LF+     E 
Sbjct: 171 TEAVMEVSSHALAQERVFGIPYDVAVFTNLTRDHLDFHGTMESYFQSKATLFKGC-GTEP 229

Query: 243 P--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           P   II  DD ++++ MK A+    +V + G+     H          +   ++  G  F
Sbjct: 230 PRVGIINRDDEWAEKFMKVANKHCDKVYTYGFAAGDFH---------AENAEMTSTGTRF 280

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE---HLEKL-----HVV--PGRFEFVG 350
           D + P  G   +++ L+     + +   +A  +E   HL+ L     H+V  PGRFE V 
Sbjct: 281 DLVTP-EGRVPIFSPLIGKVNVLNLLAAAAAAMERGIHLDSLAESITHIVRPPGRFERV- 338

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  +   + VDYAHT ++L  + K  R        GR+I +FGCGGDRD+ KRP+MGK A
Sbjct: 339 SAGQPFTVIVDYAHTDDALRNVTKLARDFVQQAGGGRVITLFGCGGDRDKTKRPLMGKAA 398

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
            + +D+ ++T DNPRSEDP+ I  +++ G+      FI + +R +AI  A+      DV+
Sbjct: 399 GEGSDLVVLTSDNPRSEDPQAIINDVLPGLAQTPIKFIVEPDRRKAIGIAVANARLGDVV 458

Query: 463 VVAGKGHETVHIVTNG 478
           ++AGKGHE       G
Sbjct: 459 ILAGKGHEKTQTTREG 474


>gi|33239864|ref|NP_874806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|46576944|sp|Q7VDG4|MURE_PROMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33237390|gb|AAP99458.1| UDP-N-acetylmuramyl tripeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 503

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 239/461 (51%), Gaps = 20/461 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +S DSRHI  G +F  + G K DG +F  +A+A GA A V+    + +D  +    +
Sbjct: 25  IDSISCDSRHISKGGLFFGLPGEKVDGGIFWRKALASGAVAAVIGEEAAQKDPPSN--ED 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +V D    ++   AS ++ K P    +++ VTGT+GK++    ++ +C++SG++S  
Sbjct: 83  MVFVVSDPVAHWMGEMAS-VFWKRPSSQIDLIGVTGTNGKTTTTYLIEHLCKQSGITSAL 141

Query: 147 IGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            G  +  + + + + +   TT     L   L+   + G     +E SSH LDQ R+ G  
Sbjct: 142 FG--TLYNRWPKHSEVAIHTTAFGDVLQSQLAQAVAAGARLGVMEISSHALDQRRVAGCS 199

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAIIYADDAY----SKEVM 257
                FTNL +DH+DYH++ +AYF +K  LF+   L  KES +++  DD +    SK++ 
Sbjct: 200 FSGAVFTNLTQDHLDYHESMEAYFQSKALLFQAPLLRDKESCSVVNIDDPWGLRLSKQLN 259

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K    A      +      + L  +   +   +  +        F+  L G F + N L 
Sbjct: 260 KSCWRASLEKRVIDSIQPELFLTDLNITNKGIEGVLHSPFGQGPFVSSLIGRFNLMNMLE 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A G+ I  G+    +L  ++    VPGR E +        + VDYAHT + L+  L  +R
Sbjct: 320 AVGILIQHGVSLQELLPSIKSFSGVPGRMEQIKVEGDLPVVLVDYAHTPDGLKNALIALR 379

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +  SGR+  VFGCGGDRD+ KRP+MG IA   AD   +T DNPR+EDP++I  +++ GI 
Sbjct: 380 SFGSGRLFCVFGCGGDRDRSKRPLMGAIASKFADHVTLTSDNPRTEDPQQILNDVLPGIA 439

Query: 438 GFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
              E   + +R  AI+ AI      D++++AGKGHE   I+
Sbjct: 440 TETELIIEIDRANAIQMAIMKALPGDIVLIAGKGHENYQIL 480


>gi|289677694|ref|ZP_06498584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 435

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/406 (35%), Positives = 206/406 (50%), Gaps = 22/406 (5%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V Q     G    
Sbjct: 20  TDVPLIPVKGLAAQLSAIAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCG 79

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G   T      Q  R TTP PI +   L+ L   G   V++E SSHGLDQ R   +  
Sbjct: 80  IVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSHGLDQGRAAALAF 139

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL RDH+DYH T +AY  AK +LF    P     +I  DD + +E+      + 
Sbjct: 140 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPDLKCRVINLDDDFGRELAAVKQESR 197

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S      +++ +      +  + T ++ +G+ F     L G F + N L A G  +
Sbjct: 198 LITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 256

Query: 324 AIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             G+D AL  +L+ L KL    GR + +G   +   + VDYAHT ++LE +L+ +R    
Sbjct: 257 --GLDYALDEILKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPHAK 313

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I    PGF+ 
Sbjct: 314 GRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI---RPGFVA 370

Query: 442 KG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                    R +AI   I   N  DV+V+AGKGHE    + NG+++
Sbjct: 371 ADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQ 415


>gi|289640757|ref|ZP_06472928.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
           Datisca glomerata]
 gi|289509333|gb|EFD30261.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
           Datisca glomerata]
          Length = 571

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 147/425 (34%), Positives = 222/425 (52%), Gaps = 39/425 (9%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+LV  + R  L   A+R+YG       +L VTGT+GK++VA  ++   + +G ++  IG
Sbjct: 152 PVLVAADPRALLGPVAARVYGDPSAALTLLGVTGTNGKTTVAYLLEAGLRAAGHTTGLIG 211

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T ++     +  TTP    L   L+ ++ +GVT  ++E SSH +  HR+ GI+    
Sbjct: 212 TVQTRLAGTVLPSVRTTPEATDLQALLAVMAERGVTAAAMEVSSHAVALHRVGGIRFAGA 271

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL +DH+D+H + + YF AK  LF     +   ++I  D  + +++      A    
Sbjct: 272 AFTNLSQDHLDFHPSMEDYFAAKAALFTP--ERTGVSVIDTDTPWGRQLAAAVPGA---- 325

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           ++ G      H + V         T   +   G D      LPG F V NALVA  L +A
Sbjct: 326 ITCGTAAD-AHWRAVDVTAGPTGTTFRALGPHGVDVRVGIALPGAFNVGNALVALALLVA 384

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITS 381
            G+ + +    L  L  VPGR E V      G+ +   VDYAHT ++++ +L+ +R + S
Sbjct: 385 TGVPAPVAAAGLASLPGVPGRMERVDA----GQPFLGLVDYAHTPDAVQTLLRTVRPLVS 440

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-- 439
           GR+IVV GCGGDRD+ KRP+MG  A   AD+AI T DNPRSEDPE I A++  G+     
Sbjct: 441 GRVIVVLGCGGDRDRRKRPLMGAAAAAGADLAIFTSDNPRSEDPELIIAQMCTGVGTLPP 500

Query: 440 ------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-----DCDI 488
                 + + +R  AIR A+      D +V+AGKGHET      G+++  V     D D+
Sbjct: 501 SARGRVMVEPDRAAAIRRAVGFARPGDAVVLAGKGHET------GQEQAGVVTPFDDRDV 554

Query: 489 IREIL 493
           +R  L
Sbjct: 555 LRAEL 559


>gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
 gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea]
 gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
          Length = 492

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 236/466 (50%), Gaps = 27/466 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81
              N +S DSR I  G +F+A+ G+  DG  FI  A  QGA A +V +         L +
Sbjct: 17  ESFNGMSLDSRAITVGDLFIAVPGHLVDGRKFIQAAFEQGAVAALVHTDEPTEHGQVLSE 76

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139
            SA+++     ++     + LS   ++ Y   P+   ++ VTGT+GK+S+   + Q+   
Sbjct: 77  ASASLQ-----ILFFQLNQELSAIGAQAYPLAPQRLKLIGVTGTNGKTSITQLMAQLVAL 131

Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G  +  +G     +     ++  TT  PI +A  L      G    ++E SSHGL Q+R
Sbjct: 132 QGKQASLMGTLGNGLWGDLVESGNTTADPITIAAQLQDFDLAGADLCAMEVSSHGLIQNR 191

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM- 257
           +  +      FTNL RDH+DYH T QAY +AK RLF+        ++I  DD   ++ + 
Sbjct: 192 VAAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFK--FSSLQSSLINLDDEVGRQWLS 249

Query: 258 --KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVY 313
             + A + G  + S       I+ +    +H++  + + V  EG+      PL G F + 
Sbjct: 250 EEQEAKHLGFSICSAHADAASIYTQD-NHLHHQGVMAMLVWPEGRA-KLASPLLGSFNLS 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N + A G    IG D   ++  +  L  V GR E   T + G  I VDYAH+ +++E  L
Sbjct: 308 NLVAALGALYLIGYDMQALVASVPLLTPVAGRMERF-TTANGVTIVVDYAHSPDAIEQAL 366

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    G++  +FGCGGDRD+GKRP+M + A   AD  ++T DN RSE PE I  +I+
Sbjct: 367 KALRGHCEGQLWCLFGCGGDRDKGKRPLMAQAAETYADKVMITSDNVRSESPEAIIEDIL 426

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            G+      + + NR +AIR  + +    D++++AGKGHET   V 
Sbjct: 427 VGLEAPERVLTQVNREQAIRQVVALAKPGDLVLLAGKGHETYQEVA 472


>gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 482

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/486 (31%), Positives = 238/486 (48%), Gaps = 45/486 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR +Q G+++VA+ G + DGH FIP A+ +GA AIV             +   
Sbjct: 23  VKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDAVQRGAVAIVGEE---------PLEPG 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P L V + R+ LS  A+  YG  P     ++ VTGT GK++ +  V  +  R+G  +  
Sbjct: 74  VPYLRVPDARRALSRLAAAFYG-FPSTRLFVIGVTGTDGKTTTSCLVHHLLTRTGRGA-- 130

Query: 147 IGPTSTIS-SFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            G  ST+   + ++ RL     TTP    +  AL+ +  +G+TH  +E SSH L QHR+ 
Sbjct: 131 -GLISTVGLRYGEETRLLEGHFTTPEAPEVQAALAEMVRRGLTHAVLETSSHALAQHRVA 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +      +TNL  +H+D+H + +AYF AK  L      +   +I+ A   Y+  +  R 
Sbjct: 190 DVAYDLAVWTNLSPEHLDFHGSLEAYFQAKAALVN----RAGFSILNAGCPYAMRLTHRP 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           H       + G Q       +V    +  + T+   G   +   P+ G + V NAL A  
Sbjct: 246 HT------TYGVQAGAYRAVRVRESTDGLRFTLEAPGFTGEAFLPMIGRYNVENALAALA 299

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+     L  L +   VPGR + +  +    R  VD+AHT  +L   L  +R  T
Sbjct: 300 AAHRAGVPLEEALPALARFSGVPGRMQILQAHPI--RAVVDFAHTPKALAKALTALRPTT 357

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI------IH 434
            GR+IVV G  G+RD  KR  +G+ A+ LAD A+ T+++ RSED   I  E+        
Sbjct: 358 PGRLIVVIGAAGERDPAKRAPLGRTAVTLADFAVFTEEDARSEDVHAILQEMERGAREAG 417

Query: 435 GIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIRE 491
           G+ G  +  K +R +AIR A+ +    D +V AGKGHE    +   ++ +  D  + +R+
Sbjct: 418 GVRGTHYALKPDRRDAIRYALSLARPGDTVVFAGKGHE--RTLERADETLPWDEAEEVRK 475

Query: 492 ILGLIL 497
            LG+ +
Sbjct: 476 ALGIAI 481


>gi|94312064|ref|YP_585274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus metallidurans CH34]
 gi|93355916|gb|ABF10005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 515

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 237/493 (48%), Gaps = 44/493 (8%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++ D+R +Q G +F A ++GN+    DG   I +AIA GA AIV    Y   +F+    
Sbjct: 31  QLTGDTRRLQPGDVFFAYVLGNERLATDGRPHIDKAIAAGASAIV----YEADNFAWPHD 86

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L V +  +     A+  YG    N  I  VTGT+GK+S + ++ ++ Q +G    
Sbjct: 87  DRVPHLAVSHLHELAGPIAAGWYGIAACNLTIAGVTGTNGKTSCSQWLARLLQMAGTRCA 146

Query: 146 QIGPTSTISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            IG     S F    +LT   TP  + L  +L+ L   G   V++E SSHGL+Q R+ G 
Sbjct: 147 TIGTLG--SGFPDALKLTGFTTPDAVQLQASLAELHDAGARAVAMEVSSHGLEQGRVAGT 204

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TNL +DH+DYH T   Y  AK RLF     K   A+I  DD   + ++  A N
Sbjct: 205 GFAVAVLTNLTQDHLDYHGTMAEYEAAKARLFAWDGLKA--AVINRDDGMGQRLL--ASN 260

Query: 263 A----GCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           A      +V+  G  GK         ++    V A        +       D   P+ G 
Sbjct: 261 AVAVSAPQVIEYGIDGKAGASVARGQWLRATGVRATGAGTAFHVDGSFGTADVTTPMIGA 320

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L   G  +A G+     ++ L +L  V GR E  G +       VDYAHT ++L
Sbjct: 321 FNVSNLLAVLGAALAQGVTWDAAIDALRRLTPVDGRMELFGGHD-APLAVVDYAHTPDAL 379

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L  +R +     G++  VFGCGGDRD  KRP+MG +A  LAD  ++T DNPRSEDP 
Sbjct: 380 VQTLTALRPVAQARQGKLWCVFGCGGDRDATKRPLMGGVAERLADEVVLTSDNPRSEDPR 439

Query: 427 KIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           +I   I  G+        IE  +R  AI  AI+     DV++VAGKGHE    +  G K+
Sbjct: 440 EILEAIADGMSDRARAALIE--DRAAAILYAIKHAAPADVVLVAGKGHEATQEI-QGRKR 496

Query: 482 MSVDCDIIREILG 494
              D + +R  LG
Sbjct: 497 PFSDREHVRLTLG 509


>gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
 gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
          Length = 490

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 242/483 (50%), Gaps = 45/483 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+ S  ++ G +F+   G K D H  IP+ + +GA A+VV     L DF      
Sbjct: 24  EITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEKEIDL-DF------ 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P + V ++R F +  AS  +    +++L    T       + +      + L      
Sbjct: 77  --PHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHMLTSLGERGSV 134

Query: 149 PTSTI-----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            T+ +     SS+  D  +TTP  I +  A+      G    ++E SSH L Q R++G++
Sbjct: 135 LTTAVKRILGSSYYDD--ITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVR 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTN+ RDH+D+H T + Y  AK+ LF+ LL  +  A++        E +  A N 
Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGVAVL-------NESLADAFNR 244

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314
             R ++ G            A +    + ++ EG  F    P           G+F  YN
Sbjct: 245 KSRKITFGTSKN--------ADYRLGNIEVNWEGTQFVLETPDGLLKVFTKAIGDFNAYN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMIL 373
           A  A      +G D   +   LE    V GRFE V G    G  + VD+AH+ ++LE +L
Sbjct: 297 AAAAIAALHQLGYDPKELASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLL 356

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           KN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LA++ I+T D+PR EDPE+I  ++I
Sbjct: 357 KNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLANVVILTTDDPRGEDPEQIMEDLI 416

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   I+   +K    D +++ 
Sbjct: 417 KGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFKDREVVE 476

Query: 491 EIL 493
           EIL
Sbjct: 477 EIL 479


>gi|148241723|ref|YP_001226880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
 gi|147850033|emb|CAK27527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
          Length = 494

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 237/476 (49%), Gaps = 24/476 (5%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P Q  +  + + S DSR I+ G +FV + G + DG  F   A+ QGA A V+    + Q+
Sbjct: 20  PQQLPDPVVTDFSCDSRRIRPGTLFVGLPGGRVDGGSFWRAALQQGATAAVIGPDAAQQE 79

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A      P+LVV +     +   +  +  HP + L++ G +G +   +    I     
Sbjct: 80  PPAP---GDPVLVVADPVAAAAGRLAAAFWNHPSDQLSLIGVTGTNGKTTTTHLI---EH 133

Query: 142 LSSFQIGPTSTISSFAQDNRL---------TTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           L+     PT+ + + A  NR          TTP    L   L+   + G +  ++E SSH
Sbjct: 134 LALACGSPTALMGTLA--NRWPGHSRNAVHTTPFADQLQADLAAAKAAGCSMAAMEVSSH 191

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            LDQ R+ G +     FTNL +DH+DYH T + YF AK +LF     K   A++ +DD +
Sbjct: 192 ALDQSRVAGCRFSGAVFTNLSQDHLDYHPTLEDYFEAKAQLFAAPYLKGQ-AVVNSDDLH 250

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +++ +R  +  C   S+      + +  +       +  +     D  F  PL G F +
Sbjct: 251 GRQLAQRLGDQ-CWRSSLEDSSAELFMDGLQFSATGVKGVLHGPSGDVPFQSPLVGRFNL 309

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G+ +  G+    +L+ LE  + VPGR E V   S    + VDYAHT + L+  
Sbjct: 310 MNLLQAVGVLLQHGLPCDGLLQALESFNGVPGRMERVPHRSDQPAVLVDYAHTPDGLDNA 369

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+  R    G++I VFGCGGDRD+ KRP MG IA  LAD  +VT DNPR+EDP++I  ++
Sbjct: 370 LQAARPFAEGKLICVFGCGGDRDRSKRPQMGAIAAQLADELVVTSDNPRTEDPQQILDDV 429

Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           + GIP     +   +R  AI  AI      D++++AGKGHE   I+  G  K+  D
Sbjct: 430 VAGIPAESACVVVADRAAAIAQAIGQAKAGDLVLIAGKGHEDYQIL--GTTKVHFD 483


>gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella woodyi ATCC 51908]
 gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC
           51908]
          Length = 502

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 149/457 (32%), Positives = 231/457 (50%), Gaps = 22/457 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N++S DSR +  G +FVA+ G++ DG  +I  A   GA+  +V +            ++
Sbjct: 19  VNKLSLDSREVDQGDLFVAVPGHQVDGRDYIDVAAKNGAQVSLVHTDNPEMHGKVLTSNS 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           T I     +R+ LS  A++ Y    E   ++ VTGT+GK+S+   + Q+    G     +
Sbjct: 79  TQIFFFQLSRQ-LSALAAQAYPLPVERLKLVGVTGTNGKTSITQLMAQLLVCLGKQPAVM 137

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +     D+  TT  PI +   L+  +  G    ++E SSHGL Q R+D +    
Sbjct: 138 GTLGNGLWGGLVDSGNTTADPITIMAQLNAFNELGADLCAMEVSSHGLIQARVDAVPFDL 197

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH T QAY  AK RLF+   P     +I  DD   K+ + ++ +A  +
Sbjct: 198 AIFTNLSRDHLDYHGTMQAYGEAKFRLFK--FPSLKSGVINLDDDLGKQWLAQSDSA--K 253

Query: 267 VLSVGYQGKFIHLKKVCAIHNK---------QQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           ++     G    + +  AI+ K         +   +  EG   +   PL G F + N L 
Sbjct: 254 LIGYSIAGDSDTVSQDAAIYTKGNHFHNQGVRAKLVWPEGCG-NIDSPLLGAFNLSNLLA 312

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A      +G D   +L  + KL+ V GR E   T   G  + VDYAHT +++E  LK +R
Sbjct: 313 ALAGLYQLGFDMNALLNAVPKLNAVAGRMEQF-TTENGITLVVDYAHTPDAIEQALKALR 371

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G +  +FGCGGDRD+GKRP+M + A   AD  +VT DN RSE P++I  +++ G+ 
Sbjct: 372 GHCEGELWCLFGCGGDRDKGKRPLMAQSAEAYADRIMVTSDNARSESPDEIINDVLAGLN 431

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                + + +R  AIR  +      D++++AGKGHET
Sbjct: 432 RPERAVTQVDRELAIREVLAAAKPGDLILLAGKGHET 468


>gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii
           37]
 gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas ingrahamii 37]
          Length = 509

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 238/471 (50%), Gaps = 42/471 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ ++ DSR I  G++F+A+ G + DG LFI +++  GA A++  +    +    TI+S
Sbjct: 26  RVSGLTLDSRQICRGYLFIALQGAQHDGRLFIEKSLKMGACAVLSETKNRSEHGQVTIKS 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+  V      LS  A R + +  +   ++AVTGT+GK+++AS +       G  S Q
Sbjct: 86  GVPVFAVYKPAAILSALAYRFFFRKIKLHKVIAVTGTNGKTTIASLLADSFMLLGKQSAQ 145

Query: 147 IGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +G       F Q   +  TT   I +   L     Q   +  +E SSHGLDQ R+  +  
Sbjct: 146 MGTIGN-GLFGQLKSSLNTTLDAISVFSELHCYQQQRAEYTIMEVSSHGLDQGRVSAVPF 204

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +  FTNL RDH+DYH + + Y  AK  LFE+   K+   II ADD    + +    +A 
Sbjct: 205 FSAIFTNLTRDHLDYHGSMENYHLAKKSLFEKYPLKQR--IINADDPIGAQWLTDFPDA- 261

Query: 265 CRVLSVGYQGKFI-----HLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYN-A 315
              +S G+  K +     +L+     ++ Q VT    S  GK      P  G+F V N A
Sbjct: 262 ---ISYGFNAKALTDKQSYLRVTDVDYHAQGVTFAFHSSWGKGV-VSAPFYGDFNVSNLA 317

Query: 316 LVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            V   L +       + +EH++    KL  VPGR E      +     VDYAHT ++LE 
Sbjct: 318 AVLTQLLV-----ENVSIEHVQTIFPKLSTVPGRMEQYYFAEKNITFVVDYAHTPDALEK 372

Query: 372 ILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L  + +  +SGR+I VFGCGGDRD GKRP M  IA   A   ++ DDNPR+E+ + I  
Sbjct: 373 VLLALQKHKSSGRLICVFGCGGDRDTGKRPQMANIAESYAQKVVLVDDNPRTENAQSIIE 432

Query: 431 EIIHGIPGFIEKGNRIEAI---RTAIEML----NKQDVLVVAGKGHETVHI 474
           +I+ G      + +R+E I   R A+  L       D++++AGKGHE   I
Sbjct: 433 DILQGFA----RPDRVEVIHDRRQAVNFLLNSAQSDDIVLLAGKGHEDYQI 479


>gi|194477172|ref|YP_002049351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
 gi|171192179|gb|ACB43141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
          Length = 508

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 234/468 (50%), Gaps = 18/468 (3%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F ++  +RKI  + ++S+ I  G +F+ + G    G  F   A+  GA   +      + 
Sbjct: 16  FGVELIDRKIYAICTNSKKITPGSLFIGLPGTNVSGDSFCYSALDSGAITALGRKIAVIS 75

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC 137
           D    + +NT          + SL A+  + + P     +L VTGT+GK++V   ++ + 
Sbjct: 76  DLP--LVANTLTNADKQIAHWTSLLATNFW-QQPSRWMILLGVTGTNGKTTVTHLIEHLS 132

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             SG  S   G  +     ++   + TTP    L   L+     G    ++E SSH L+Q
Sbjct: 133 TASGRPSALFGTLANRWPGYSATTKNTTPFADQLQAQLALAVEAGSQIGAMEVSSHALNQ 192

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESP-AIIYADDAYSK 254
           +R+ G +     FTNL +DH+DYH + +AYF +K  LFE  LL    P A+I +DD +  
Sbjct: 193 YRVMGCQFAGAVFTNLSQDHLDYHPSLEAYFESKASLFEHPLLANHGPLAVINSDDLWGA 252

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            + +R  +   R     +  +        +++    + ++  G+ + F  P+ G F + N
Sbjct: 253 RLAQRLGSNCWRSSLRDFSAELTMRNLTFSVNGVSGIIVTPLGEGY-FSSPMVGYFNLMN 311

Query: 315 ALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSL 369
            L A G+ I   G   + +L+ ++    +PGR E    +         + +DYAHT + L
Sbjct: 312 LLQAIGVLIQQKGFSLSSLLKAVKTFRGIPGRMERLIPYPNKLDLSPSVIIDYAHTPDGL 371

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L   R+   G +I VFGCGG+RD+ KRPIMG+ A  LAD  IVT DNPR+E+PE+I 
Sbjct: 372 EKALIAARSFVKGSLICVFGCGGNRDKRKRPIMGETAARLADEIIVTSDNPRTENPEEII 431

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            +I+ GIP     + + +R  AI +++   +  D++++ GKGHE   I
Sbjct: 432 KDILAGIPLGRKVLVEVDRSIAIMSSVSAASPNDLILIVGKGHEDYQI 479


>gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 850

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 222/451 (49%), Gaps = 34/451 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +++DSR ++   +F+A  G   DG  +I  AIA+GA  ++  S    Q F       
Sbjct: 386 VHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDS----QGFDWKPEWQ 441

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + + + +  +   AS+ Y    E +  + VTGT+GK++V  ++ Q  +     S  I
Sbjct: 442 VHNIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSAVI 501

Query: 148 GPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T+ + A    Q  + TTP P+ L K L+      V  V++E SSHGLDQ R++G+ 
Sbjct: 502 G---TLGNGALEDLQATQNTTPGPVELQKMLATFVLDDVRMVAMEVSSHGLDQGRVNGVA 558

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+ RDH+DYH T +AY  AK +LF+      S A++ ADD +   +++     
Sbjct: 559 FDVAVLTNITRDHLDYHLTMEAYQAAKRKLFD--WQTLSAAVVNADDPFGLALIEDLRKQ 616

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G +VLS G   +         +H    ++ +       D      G+F VYNAL      
Sbjct: 617 GKKVLSYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCL 676

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTI 379
           +   +     L+ +  L  V GR +  G    GG    + VDYAHT ++LE  L  +R+ 
Sbjct: 677 LVNEVALPAALQAVSGLVPVAGRMQMFG----GGDLPLVVVDYAHTPDALEKALHTLRSQ 732

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G++  VFGCGGDRD GKR  MG+IA +LAD  I+T+DNPRSE+P  I A I  G+   
Sbjct: 733 ARGKLACVFGCGGDRDSGKRSEMGRIADELADSVIITNDNPRSENPYAIIAAIAEGM--- 789

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                   A    +E    + + +   KGHE
Sbjct: 790 --------AREATVETDRAKAIALAVSKGHE 812


>gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
          Length = 515

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 256/512 (50%), Gaps = 35/512 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERK-------INEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           Y  FP  IN+L    + W   +       I  +  DSR++  G +F+AI G+K DG L+I
Sbjct: 8   YYIFP--INKLRELVIPWVFNELISSALVITALQLDSRNVTVGNLFIAIKGHKTDGRLYI 65

Query: 61  PQAIAQGAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
             AI  GA A+++ S     +  Q+    + S  PI+      + +S  A R YG HP  
Sbjct: 66  KHAIKNGAVAVLLESTNNDNFLAQNIVNNVSSCVPIINFYKLNQAVSSIAGRFYG-HPSR 124

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLA 171
             N++ VTGT+GK++++  +    +  G  S  +G      I S    N  TT S I   
Sbjct: 125 NLNLIGVTGTNGKTTISHLLANWVELLGEKSAVMGTIGYGMIGSMCVSN-CTTFSAIDTQ 183

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + L+     G+  V++E SSHGLDQ+R+D +      F+NL  DH+DYH     Y  AK 
Sbjct: 184 RILNQFIQSGIKFVAMEVSSHGLDQYRVDALYFDVAIFSNLTSDHLDYHGDINKYIMAKW 243

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHN 287
           RLF EL    +  +I  DD    E +    N+        L   ++G++I L K      
Sbjct: 244 RLFSELCV--TNYVINVDDYIGYEWLSYLPNSVAVTIQDNLPKFWKGEWIKLVKANYFVY 301

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              V       +      L GE  V N L+A G  + +G    ++L   ++L  + GR E
Sbjct: 302 GTDVFFHSSWGNGIIRSQLLGECNVSNLLLALGALLVLGYPLMVLLSIADQLKPICGRLE 361

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              + ++   I VDYAHT ++LE IL+ +  +    G++  VFGCGG+RD+ KR  MG +
Sbjct: 362 KFKSFNK-PTIIVDYAHTPDALEKILRFLGAQLCKKGKLWCVFGCGGNRDKLKRSRMGIV 420

Query: 406 ALDLADIAIVTDDNPRSEDPEK----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           A   +D  ++TDDNPR+E+ +     I  +I H     I K NR++AI TAI   +  D 
Sbjct: 421 AERYSDYVVITDDNPRTENSQSIIDDIILKIKHSEKITIIK-NRVQAIETAICQADSNDF 479

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHE+  IV N   K S D DI+R IL
Sbjct: 480 ILIAGKGHESYQIVGNDYLKYS-DQDIVRNIL 510


>gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
 gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
          Length = 500

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 229/467 (49%), Gaps = 32/467 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I +G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 29  EITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  Y  +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 84  ----IPKIIVKDARYAMAVIASHFYS-YPSNEMKLIGITGTNGKTTTSYLLEKILTDYGF 138

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     I S      + T     L + L  + +    +  +E +S GL   R+ G
Sbjct: 139 QTGIMGNNGVKIGSKWYPTDINTQESPALQRNLQMMKNHNTDYCVMEVTSQGLHMERVKG 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256
                  FTNL +DH+DYH T + Y + K  LF  L        +  AI+ ADD  S E 
Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFEEYKHVKGLLFSRLGNDFSATDKKIAILNADDP-SVEY 257

Query: 257 MKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G   G  +  K +       Q  +S    + +    L G F VYNA
Sbjct: 258 FKKVTSA--EVITYGINNGADVQAKSITLSSKGIQFLVSSFNGEIEINLNLVGRFNVYNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L      +  GI    + + L  +  + GR E +  N +   + VDYAH+ ++LE +L  
Sbjct: 316 LAVITATLVEGIPLTNISDSLSHVKSIEGRMEIIDEN-QDFLVIVDYAHSPDALENVLST 374

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   +  +II VFGCGGDRD  KRPIMG+IA   +D   +T DNPRSEDP+ I  +I  G
Sbjct: 375 ISEFSKAKIITVFGCGGDRDAKKRPIMGEIAGGYSDFVYITSDNPRSEDPQAIMKDIEKG 434

Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                    ++E     AI  AI+M +  D++++AGKGHET  I+ +
Sbjct: 435 FSQNNNLNYKVEVDRELAINHAIQMASSNDIVLIAGKGHETYQILKD 481


>gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. AS9601]
          Length = 511

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 238/477 (49%), Gaps = 36/477 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAEA ++  A   +    +I
Sbjct: 23  DQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGPAAKQK--IGSI 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                +++ DN         +  + +    +  + VTGT+GK+++   ++ + ++ G  +
Sbjct: 81  DRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYLLKKLGKKT 140

Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              G   +    F++    TT     L   L+           +E SSH + Q+R+ G +
Sbjct: 141 ALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFAILEVSSHSIAQNRISGCE 200

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAY----SKEVM 257
             A  FTNL +DH+DYH   ++YF  K +LF    L  K+   ++  DD +    S ++ 
Sbjct: 201 FEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGICVLNHDDHWISKLSSDLK 260

Query: 258 KRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           KR+     ++    ++          KF      C  H  ++              PL G
Sbjct: 261 KRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE--------KIQLFVPLVG 312

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN----SRG-GRIYVDYA 363
           EF + N + A  +   +      + + ++     PGR E +  +    SR    + VDYA
Sbjct: 313 EFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSRSLPTVIVDYA 372

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +L+D   +T DNPR+E
Sbjct: 373 HTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQLFITSDNPRTE 432

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +P+KI  +I+ GI      I + +R +AI  +I+  NK+D++++AGKGHE   I+ +
Sbjct: 433 EPQKIVNDILMGIKKREKIIIEIDRFKAINESIQFANKKDIVLIAGKGHEDYQILND 489


>gi|240168222|ref|ZP_04746881.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium kansasii ATCC 12478]
          Length = 528

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 234/474 (49%), Gaps = 41/474 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +P  +R+ +I  V+  ++ +Q G +F A+ G+   G     +AI +GA A V++ A  + 
Sbjct: 36  YPETFRDVQITGVTLRAQDVQPGDLFAALAGSATHGARHAGEAIERGAVA-VLTDADGVA 94

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQ 138
              A   ++ P+LV    R  L   A+ +YG+  E +  V  T       +   V+   +
Sbjct: 95  AMGAHA-ASVPVLVHPAPRSVLGGLAATVYGRPSERLTVVGITGTSGKTTTTYLVEAGLR 153

Query: 139 RSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             G  +  IG T  I     D  + LTTP    L   L+ +S +GV  V +E SSH L  
Sbjct: 154 AGGRVAGLIG-TIGIRIDGADIPSALTTPEAPALQAMLAEMSERGVDTVVMEVSSHALAL 212

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKE 255
            R+DG +   G FTNL RDH+D+H T + YF AK  LF+     +    ++  DD   + 
Sbjct: 213 GRVDGTRFAVGGFTNLSRDHLDFHPTMEDYFEAKALLFDPASALRAGTVVVCVDDDAGRA 272

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------- 305
           + +RA +A    ++V  + +  H + V        V +   G++F  + P          
Sbjct: 273 MAERAGDA----ITVSARDRAAHWRAV------DVVPMGAAGQEFTAIDPAGVQHRVRIG 322

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYA 363
           LPG + V N L+A  +  +IG+        L +  V PGR E V    RG      VDYA
Sbjct: 323 LPGGYNVANCLLALAILDSIGVSPEQAAPGLRQARV-PGRLEQV---DRGQDFLALVDYA 378

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +L  +L  + T    R+ VVFG GG+RD GKR  MG +A +LAD+ +VTDDNPR E
Sbjct: 379 HKPGALRAVLTTL-TSPDRRLAVVFGAGGERDPGKRAPMGAVAAELADLVVVTDDNPRGE 437

Query: 424 DPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DP  IR EI+ G          +E  +R +AIR A+      DV++VAGKGHET
Sbjct: 438 DPAAIRREILAGAAAAGGTAEVVEVADRRDAIRHAVAWAGPGDVVLVAGKGHET 491


>gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
 gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
          Length = 490

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 154/481 (32%), Positives = 241/481 (50%), Gaps = 41/481 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+ S  ++ G +F+   G K D H  IP+ I +GA A+VV     L DF      
Sbjct: 24  EITGVSNHSSKVKKGDLFICRKGEKFDSHEIIPEVIEKGAVAVVVEKEIDL-DF------ 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P + V ++R F +  AS  + +  +++L    T       + V      + L      
Sbjct: 77  --PHIQVFDSRYFEAKVASLFFDEPWKDVLTFGVTGTNGKTTTTVMIYHMLTSLGEKGSV 134

Query: 149 PTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            T+ +    ++   + +TTP  I +  A+      G    ++E SSH L Q R++G++  
Sbjct: 135 LTTAVKRILENSYYDDITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVRFD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G FTN+ RDH+D+H T + Y  AK+ LF+ LL  +  AI+        E +    N   
Sbjct: 195 VGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGIAIL-------NESLADTFNRKS 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL 316
           R ++ G            A +    + ++ EG  F    P           G+F  YNA 
Sbjct: 247 RKITFGTSKN--------ADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIGDFNAYNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKN 375
            A      +G D   +   LE    V GRFE V G    G  + VD+AH+ ++LE +LKN
Sbjct: 299 AAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLLKN 358

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R I+ GR+IVVFG GG+ D+GKRP+M ++A  LAD+ I+T D+PR EDPE+I  ++I G
Sbjct: 359 VRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPRGEDPEQIMEDLIKG 418

Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           I     ++   +R EAI TA+ + N+ D +V+AG+GHE   I+   +K    D +++ EI
Sbjct: 419 IDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFQDREVVEEI 478

Query: 493 L 493
           +
Sbjct: 479 I 479


>gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 464

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 239/469 (50%), Gaps = 31/469 (6%)

Query: 15  INQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           I+QL I  +Q   + +I  +  +++  Q G +F+A+ G   +G  +I QAI +G  AI+V
Sbjct: 3   ISQLLINIIQTEVDIEIKGLCLNTQSAQPGDLFIALQGESTNGTDYINQAIDKGCVAILV 62

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASF 132
            S          I    P + V+N   +L   A+  Y    + +++ VTGT+GK+SV   
Sbjct: 63  DSK--------EIECAIPSIRVNNLPIYLQTLANTFYNNATKIDVIGVTGTNGKTSVTYL 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + Q+ ++ G+ +  IG T  I+   Q    TTP  + L + L +   Q + +  +E SSH
Sbjct: 115 ISQLLEKLGVKNGLIG-TLGITHNKQLYFNTTPDILTLYRVLHHYYQQDIHYAVIEISSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L Q+R+ G+ +    FTNL +DH+DYH T   Y   K RLF   L      I+  DD +
Sbjct: 174 ALAQNRIAGLNIKQAVFTNLTQDHLDYHHTLDEYKTTKQRLFT--LNCVKSVILNQDDHH 231

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K         +S G +     L    +I   QQ  + V+   + F  P  GEF +
Sbjct: 232 YKHFLK---------VSKGKKQTSYSLNDFNSIKIIQQGFL-VQLDHYVFEIPFLGEFNL 281

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L       A+G     ++  + +L   PGR + +         ++DYAHT N+LE  
Sbjct: 282 LNILATLNSVEALGFKRNDIIPLIYQLSTPPGRMQQIN----HYHAWIDYAHTPNALENA 337

Query: 373 LKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +  + +   + +I +VFGCGG+RD+ KR  MG+IA  LAD  I+T+DNPRSE+P+ I  +
Sbjct: 338 ITTLQKHYPNFKIRIVFGCGGNRDRNKRSKMGRIASKLADSIILTNDNPRSENPQTIIND 397

Query: 432 IIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I++GI    E     +R  AI TA+  L K + L++ GKGHET   + N
Sbjct: 398 ILNGIDDSFELDIIKDRQLAIETAMITLKKNECLIITGKGHETTQQLFN 446


>gi|126643214|ref|YP_001086198.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 414

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 200/378 (52%), Gaps = 35/378 (9%)

Query: 114 PENILAVTGTSGKSSVASFV-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           P  I+AVTGT+GK++++  +       QQ C   G +   I P  T S+       TT  
Sbjct: 17  PLRIIAVTGTNGKTTISRLIAELISSQQQRCAVMGTTGNGILPNLTPSTH------TTLD 70

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            + L  AL   + QG T  S+EASSHGL+Q RL+G  +    ++NL RDH+DYH T +AY
Sbjct: 71  ALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAY 130

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK RLF+        A+I  DDA++  ++K A N   +   + Y      L +  A +
Sbjct: 131 AEAKARLFQ--FNSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYS-----LTQNTADY 183

Query: 287 NKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               ++ S+ G  F+ +          PL G F V N + A       G D   ++  + 
Sbjct: 184 YITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVP 243

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           KL   PGR + +  + R     VDYAHT ++L  +LK ++   S ++  VFGCGGDRD+G
Sbjct: 244 KLIGAPGRMQVIRDDER--LFVVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRG 301

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI 453
           KRP+M + ALD A+  I+T DNPR+EDPE+I A++  GI        E  +R EAI+   
Sbjct: 302 KRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVA 361

Query: 454 EMLNKQDVLVVAGKGHET 471
           E     D++V+AGKGHE 
Sbjct: 362 EQAQAGDIVVIAGKGHEN 379


>gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
 gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
          Length = 503

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 147/462 (31%), Positives = 236/462 (51%), Gaps = 28/462 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N + +DSR +++G +F+A  G K DG  FI QAI QGA A++  +   + D + T+   
Sbjct: 16  LNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQAILQGAAAVIWDAHNFVWDKAWTV--- 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P + + + R      A  +YG+  +++  + VTGT+GK+S   ++ Q    +G     I
Sbjct: 73  -PNIGISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNGKTSTCHWIAQALGDAGKKCALI 131

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G       +  + +  TTP  I +   L+   + G    ++E SSH L Q R++G++   
Sbjct: 132 GTLGNGFVNELEASANTTPDAIRVQGLLADFLNSGAQAAAMEVSSHALAQGRVNGVRFDV 191

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TNL RDH+DYH   ++Y   K RLF+      + A+I  DDA+  E+  +  +    
Sbjct: 192 ALLTNLSRDHLDYHGDMESYAATKRRLFD--WQSLNYAVINLDDAFGAELALQLVDKTVE 249

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----------DFLFPLPGEFQVYNA 315
           V+  G   + + L +   +     V + ++                    + G F V N 
Sbjct: 250 VIGYGTTDEALRLAERHGLRMVYGVVLEMDSHGMKVEVRSSWGAAQLSTQMVGRFNVSNL 309

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ +   +     +  L  +  V GR + +G N +   + VDYAHT ++LE +L  
Sbjct: 310 LGALGVLLVSDVTLDAAVASLNAVQPVTGRMQKLGGNDQP-LVIVDYAHTPDALEKVLLA 368

Query: 376 I-----RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +      T   G++I VFGCGGDRD+GKR +MG++A   AD  IVT DNPRSED ++I  
Sbjct: 369 LCEAAQGTKAGGQLICVFGCGGDRDRGKRAMMGRVAEKFADRCIVTSDNPRSEDAQQIIG 428

Query: 431 EIIHGI-PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           E+I G+  G  E   +R +AI  AI M  + D++++AGKGHE
Sbjct: 429 EVIAGMNEGRHEVISDRADAIGHAIAMAGRADIVLIAGKGHE 470


>gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 162/464 (34%), Positives = 236/464 (50%), Gaps = 56/464 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR + +   FVA+ G   DGHLFI +A+  GA AIV  S  ++        +   I +V
Sbjct: 33  DSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCESGPAV--------AGPDIALV 84

Query: 96  DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
            ++R+ L+  AS L    P +   + AVTGT+GK++VA+ V  +   +   S  IG T  
Sbjct: 85  KDSRRALAELAS-LMESDPASKLKVFAVTGTNGKTTVATLVAHVLDANNHKSGFIGTTGY 143

Query: 152 -TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              + F +  R TTPS + + + L  + + G +H S+E SSH +DQ R+    +    FT
Sbjct: 144 RDGTHFYEAVR-TTPSTVRVYELLGQMLASGCSHCSMELSSHAIDQDRIRMRDVDVALFT 202

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL RDH+DYH T + YF AK +LF+E LP  + A++  DD   K +   A +    V++ 
Sbjct: 203 NLTRDHLDYHSTFELYFAAKKKLFDE-LPDGAVAVVNVDDPRGKGI---AADTTGSVITF 258

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAG 320
           G               +   V+ S+EG +   L          F L G +   N   A  
Sbjct: 259 GSD-------------DHSDVSFSIEGNELSGLDLTIDGHRRRFQLAGTYNASNLAAAYA 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFE---FVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376
              A+G+ +   ++ L     V GRFE   F G    G  + VDYAHT ++L+ +L+  +
Sbjct: 306 ASRALGLSALESIDALSSSPPVEGRFERMQFEG----GTMVIVDYAHTPDALKNVLEATL 361

Query: 377 RTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            ++  G  +  +FGCGGDRD GKR  MG IA  LA   IVT DNPR+EDP+ I  +I  G
Sbjct: 362 ESMRPGSTLWCIFGCGGDRDPGKRAQMGAIAERLAHKVIVTSDNPRTEDPKLILDDIRQG 421

Query: 436 I----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +      F E   R    R A  M++  D LV+AGKGHET  ++
Sbjct: 422 LLKPEDAFWEIDRRDAISRAAASMVSG-DTLVLAGKGHETYQVI 464


>gi|71066607|ref|YP_265334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
 gi|71039592|gb|AAZ19900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
          Length = 584

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 222/414 (53%), Gaps = 33/414 (7%)

Query: 91  PILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           P+L V N R FL SL  +RL  +       ++AVTGT+GK++++  V Q+ Q +G+SS  
Sbjct: 156 PVLYVPNIRDFLGSLIQARLQYQQRVTLPTVVAVTGTNGKTTISQLVAQLTQLTGMSSAV 215

Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +G      + +  Q +  TT   + + + L  +  +G   +++EASSHGLDQ RL G+ +
Sbjct: 216 MGTAGNGRLGALVQASH-TTGDTLAVQQFLHQMGKEGAELLALEASSHGLDQQRLQGMPV 274

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNA 263
               +TNL RDH+DYH     Y  AK +LF++   P  + AII  DD Y++ ++  AH +
Sbjct: 275 SVAIYTNLSRDHLDYHADMAEYAAAKAKLFDKAHFPDLTHAIINIDDEYAQIMLDTAHAS 334

Query: 264 GCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGK--DFDFLFPLPGEFQV 312
             +V    L       F+      ++H    V IS+     +GK    D + PL G F V
Sbjct: 335 HLKVWTYSLDPSKTATFVAADITPSLHG---VEISLCTDFGDGKVNHLDIVSPLLGRFNV 391

Query: 313 YNALVAAGLCIA----IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            N L A    +A     GID   ++  + +L    GR + V +N   G   VDYAHT ++
Sbjct: 392 ANLLAAIAAAVALGHKTGIDIERIIAVIPQLQGAVGRMQRVPSND--GCFIVDYAHTPDA 449

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +L +++T   G++  VFGCGGDRD GKRP+M +  L  AD  I+T DNPR+EDP  I
Sbjct: 450 LSQVLASLKTHCKGQLWAVFGCGGDRDTGKRPLMAQAGLAGADKVILTADNPRTEDPNVI 509

Query: 429 RAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQ----DVLVVAGKGHETVHIVTN 477
             ++  G+     +   IE+ R TAIE    Q    D++V+AGKGHET   + N
Sbjct: 510 LQDMQAGMSTEQYQRTHIESARQTAIEYAVSQAAADDIVVIAGKGHETYQEINN 563


>gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
 gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
          Length = 496

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 245/485 (50%), Gaps = 42/485 (8%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +F    R+  I E++ DSR+++ G +F+A+ G K DG     + IA        + AY  
Sbjct: 9   LFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGR----EHIADALARGAAAVAYEE 64

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135
           Q  S    ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q  
Sbjct: 65  QGASVLPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124

Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             + QR GL    IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH
Sbjct: 125 DLLGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSH 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L+Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DD +
Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDDF 238

Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFL 303
            + +           +   R+LS   +     L   + V +    +   ++ +G+     
Sbjct: 239 GRRLAADFARRPSVDHIETRLLSYSLENPEASLFCREAVFSDDGVRATLVTAQGERI-LR 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             L G F + N  + A +   + +D AL  +L+   +L    GR + +G   +   + VD
Sbjct: 298 SQLLGRFNLSN--MLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKP-LVVVD 354

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR
Sbjct: 355 YAHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPR 414

Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +EDP +I  +I    PGF    +      R EAI   I      DV+V+AGKGHE    +
Sbjct: 415 TEDPSRIFDDI---RPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI 471

Query: 476 TNGEK 480
            NGE+
Sbjct: 472 -NGER 475


>gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 497

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 239/489 (48%), Gaps = 48/489 (9%)

Query: 25  WRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           W + ++ + + SDSR ++ G +F  + G   DGH FI + +  G    ++       D  
Sbjct: 25  WNDLKETSRLCSDSRLVKPGDVFACVCGRHFDGHSFIMEGLRLGVAGFMIERPTDGLD-- 82

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                    + V + R  +   A+RL G   + +  +AVTGT+GKS+ +  ++ +    G
Sbjct: 83  -------NWIQVTDVRAAMGFLAARLAGSPCDRLKMVAVTGTNGKSTSSYMIRSVLSACG 135

Query: 142 LSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + +  IG   T+     D       TTP    L +    + + G     +E SSHGL Q 
Sbjct: 136 IKTGLIG---TVVYHDGDKETVADRTTPESTALQRLYESMIANGCGACVMECSSHGLVQG 192

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ G       FTNL  +H+DYH T + YF AK  LF E L   +   +   D + +++ 
Sbjct: 193 RISGSTYDGALFTNLSPEHLDYHGTMEEYFAAKSLLFTEHLKPNAVISVNGCDPWGQKLA 252

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD------FL----FPL 306
            R  ++    L+ G   G  + +K         ++T+   G DFD      FL     P+
Sbjct: 253 ARFPSS----LTWGLGDGADVRVKA-------DRLTMKAGGSDFDLQVDGQFLGRVALPM 301

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V NAL AA LCI +G     V++ LE +  VPGR E +   S G  + VD+AHT 
Sbjct: 302 TGRFNVENALGAASLCIGLGCSPEAVVKGLETMPQVPGRMERINL-SNGVTVIVDFAHTE 360

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +L  +L  +R +   R+I VFG GG+R  G RP +GKIA   AD  IVT DNPR+EDP 
Sbjct: 361 IALTNLLATLRPLAK-RLISVFGHGGERFAGARPELGKIAGQTADRVIVTMDNPRNEDPA 419

Query: 427 KIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           +I   I+ G+ G    F    +R +A+  A++   + DV+V++GKG E  ++   G K  
Sbjct: 420 EIARAIVAGLEGGKASFSTVLSRRDAVFAALDEAERGDVVVISGKGAEP-YLEIKGVKYP 478

Query: 483 SVDCDIIRE 491
             D D++ E
Sbjct: 479 YSDRDVVGE 487


>gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
 gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
          Length = 533

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 220/444 (49%), Gaps = 31/444 (6%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+ G++  G  +  QA+ +GA A++   A + +  + T   +  +LVV+  R+ L  
Sbjct: 37  LFAALPGSRAHGAGYAGQALERGAAAVLTDRAGA-ELLAGTDLGSVALLVVERPREHLGA 95

Query: 105 FASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNR 161
            A +LYG       ++ VTGTSGK++    ++      G  S  IG   T I      + 
Sbjct: 96  IARQLYGDPSRRLAVVGVTGTSGKTTTCYLLEAALAADGSRSAVIGTVQTRIDGQITPSA 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTP    L   L+ +  +GV  V++E SSH L   R+ G +   G+FTNL +DH+D+H 
Sbjct: 156 LTTPEAPDLQALLAVMVERGVGAVAMEVSSHALSLGRVSGTRFAVGAFTNLSQDHLDFHH 215

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVGYQGKFIH 278
             + YF AK  LF+    +    +I  D  Y   +      A     R  +  +  + + 
Sbjct: 216 DMEDYFRAKAMLFDG---RAGAHVIDVDTEYGARLAAEHPEALTVSDRPGAADWSVEMVT 272

Query: 279 LKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           L    A +  Q V +S  GK        +PG F V NA VA     A+G D     + L 
Sbjct: 273 L----AANGVQHVVLSGPGKRQVTLDLAIPGAFNVGNAAVALACVDALGRDVQQAADALA 328

Query: 338 KLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            + VVPGR E V      G+ +   VDYAH   ++  +L  I    +G +IVV G GGDR
Sbjct: 329 TV-VVPGRMERVDA----GQDFLAVVDYAHKPGAVAAVLDAIGQGLAGPLIVVLGAGGDR 383

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRI 446
           D GKRP+MG  +   AD+ IVTDDNPRSE P  IRA+++ G            +E G+R 
Sbjct: 384 DTGKRPMMGAESAARADVLIVTDDNPRSERPADIRAQVLAGAAPVADRRPCQVLEIGDRR 443

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHE 470
            AIR A+++      +V+AGKGHE
Sbjct: 444 AAIRRAVQLAGTGGAVVIAGKGHE 467


>gi|78484908|ref|YP_390833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomicrospira crunogena
           XCL-2]
 gi|78363194|gb|ABB41159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 505

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 155/491 (31%), Positives = 250/491 (50%), Gaps = 37/491 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT- 85
           E  ++ ++ DSR ++ G  F+A+ G +  G     QAI QGA  I+   A  L +F+ + 
Sbjct: 24  EVDVSALTIDSRQVERGTAFIALQGGQSHGMAHAEQAIKQGASCILTDRA-GLVEFNHSH 82

Query: 86  ---IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
              +    P++ V +  + L+ FA   Y    E  N++ VTGT+GK+S + ++ Q+   +
Sbjct: 83  QQPLNKTCPVIEVGSLNQQLATFAKWFYDAPSERVNVIGVTGTNGKTSSSHYIAQML--T 140

Query: 141 GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            L+  ++    T+ +    N      TT   + L   L+  + +   +V +E SSH ++ 
Sbjct: 141 ALNQ-KVALLGTLGNGWFGNLHPSINTTVDVVRLNHLLNGFAEEQADYVVMEVSSHAIEL 199

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+ GI     + T + RDH+D+H+T++AY  AK +LF  L       +I ADD   + +
Sbjct: 200 GRIKGIDFDVLAMTQVTRDHLDFHKTEEAYQAAKKKLF--LTYSSRYQVINADDKVGQAL 257

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVC--------AIHNKQQVTISVEGKDFDFLFPLPG 308
               H    +   V Y  +      VC         IH     T +++G    F  PL G
Sbjct: 258 F---HELSNKDTIVRYSQQTAQADIVCLDSHLSRTGIHG----TFTLQGGSIPFDVPLMG 310

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F + N L A  +  A G +   + + L  +  V GR E + T      + +DYAHT ++
Sbjct: 311 QFNLENVLCAVSVMAACGFEWHRIQKALVFVKAVKGRMELL-TQPGYPSVLIDYAHTPDA 369

Query: 369 LEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           LE ILK ++   S R   + VVFGCGGDRD GKRP+MG+IA   A+  ++TDDNPR+E P
Sbjct: 370 LEAILKAVQHHVSDRDATVWVVFGCGGDRDTGKRPLMGEIAETYANEVVLTDDNPRTELP 429

Query: 426 EKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           + I A+I  G+   +    +R EAI  AI+  +  D++V+AGKGHE    +      MS 
Sbjct: 430 DAIVADIKKGMHRSVHVVHDRPEAIAFAIKKASSHDIVVIAGKGHEDYQEIQGKRWPMS- 488

Query: 485 DCDIIREILGL 495
           D  I++++L +
Sbjct: 489 DQKIVKDLLSM 499


>gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
          Length = 934

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 154/472 (32%), Positives = 241/472 (51%), Gaps = 33/472 (6%)

Query: 23  MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + W  R ++   ++  D+R + AG +F A VG   DG  +I QA+  GA AIV+ +    
Sbjct: 10  ISWLSRHVSPKAQLCLDTRQLSAGDVFFACVGLTGDGRDYIAQAVEAGAAAIVMQAD--- 66

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137
              SAT   + P+L V +    L       Y +  E+  ++AVTGT+GK+S   ++    
Sbjct: 67  DRASATPAIDVPVLAVPDLPGQLGSIGHLWYDRPSEDMSVVAVTGTNGKTSCVQWLAAAL 126

Query: 138 QRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              G     IG          +    LTTP  + + ++L+ + + G   V++EASS GLD
Sbjct: 127 NAEGTPCGTIGTLGVTLPNGNNLGGVLTTPDVLSMHRSLATMRAAGAQVVALEASSIGLD 186

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q RLD ++++  +FTNL  DH+DYH T   Y  AK  LF    P    A++  DD   K+
Sbjct: 187 QGRLDQVRIVIAAFTNLTHDHLDYHGTLDNYQRAKFSLFA--WPGLRGAVVNVDDPAGKQ 244

Query: 256 VMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           ++     A     S+        Q + IH  +   + N     ++ +G     L  L GE
Sbjct: 245 LVSTLPPASTLAYSISGHAEATIQAQDIHAGRYGLVFN----VVTRDGA-VQLLTRLVGE 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV------GTNSRGGRIYVDYA 363
             V N L+  G+   +G D + +   L  L  V GR + V      G       + VDYA
Sbjct: 300 HNVANLLLVTGVLQQLGWDLSRIARVLSTLRSVEGRLQVVDALGAVGAAHGQAMVVVDYA 359

Query: 364 HTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           HT ++L+   + L+++  +  G++I VFGCGG RD+ KRP+MG+IA++LAD  ++T+DNP
Sbjct: 360 HTPDALKRALLALRDVARVRGGKLICVFGCGGSRDRSKRPMMGRIAVELADEVVLTNDNP 419

Query: 421 RSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           R E+P  I A+I  G+      + +R  AI ++I   +  DV+++AGKGHET
Sbjct: 420 RLEEPLDIIAQIKSGMSTAARVELDRALAILSSIWAADAHDVVLLAGKGHET 471



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 149/340 (43%), Gaps = 48/340 (14%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F + W++     +S+D+R I  G +FVA+ G   DGH ++  A+  GA A VV      +
Sbjct: 490 FALSWQQGM--SISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVVEH----K 543

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D +  +    P  V+ +TR+ L   ++    +H   ++AVTG++GK++    +  I ++S
Sbjct: 544 DTAVAL----PQFVLGDTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQS 599

Query: 141 GLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                  G  +++++    +N +  P  +        L+ Q    V     +H  +   L
Sbjct: 600 P------GEEASLATRGNLNNDIGVPLTVL------RLNRQHRAAVFELGMNHPGEISLL 647

Query: 200 DGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            GI +       N  R+H ++  T +A       +  ++LP +  A+   DDAYS     
Sbjct: 648 AGIAQPTVALVNNAQREHQEFMLTVEAVARENGTVI-DMLPVDGIAVFPGDDAYSD---L 703

Query: 259 RAHNAGCR-VLSVGYQGKF------IHLK---KVCAIHNK-QQVTISVEGKDFDFLFPLP 307
            A  AG R VL  G+   F      IH +    VC IH      T+++           P
Sbjct: 704 WAELAGTRTVLRFGFSPDFDVYADQIHAEPTHTVCCIHTPIGSATLALAS---------P 754

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           G   + NAL AA    A G+    +++ LE  + V GR +
Sbjct: 755 GVHNLRNALAAAACAFATGVPLESIVQGLEAFNPVSGRMQ 794


>gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas europaea ATCC 19718]
 gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas
           europaea ATCC 19718]
          Length = 521

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 160/510 (31%), Positives = 249/510 (48%), Gaps = 48/510 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+NQL +        K+  + +DSR ++ G  F+A  G + D    IPQAIA+G  AI+ 
Sbjct: 18  LLNQLDV--------KVRHLVADSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAII- 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVA 130
              +  Q FS       P L V   R      AS  YG HP     ++ +TGT+GK++ +
Sbjct: 69  ---WEKQGFSWKPEWKIPNLGVAGLRHEAGKIASEAYG-HPSRHLWLVGITGTNGKTTCS 124

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  Q     G  +  IG            +  TTP  +YL + ++    QG + + +EA
Sbjct: 125 QWYAQAMAALGKKTAVIGTLGHGFPGALYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEA 184

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL Q RL G +      TNL RDH+DYH +  AY  AK +LF         A++  D
Sbjct: 185 SSHGLSQDRLIGSEFAVAVLTNLTRDHLDYHDSMDAYAAAKAKLF--FWEGLQYAVLNLD 242

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
           +    E+ ++       ++  G++      +    +K+    N Q  T  + G D +F  
Sbjct: 243 EVLGVELSQQLAGKDLSIIGYGFKQPRQTAQTAGNQKILYGSNLQFTTQQI-GFDVEFCN 301

Query: 304 ------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + G +  YN L      +A  ID    +  L ++  +PGR E +G  ++   
Sbjct: 302 RYASLQCNVTGRYNAYNLLAVLAALLASNIDLDDAITALRQVQPIPGRMEKLGGGNQP-V 360

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG------------RIIVVFGCGGDRDQGKRPIMGKI 405
           + VDYAHT ++L  +L  +R   +G            ++I V GCGGDRD+GKRP++G+I
Sbjct: 361 VIVDYAHTPDALNEVLTGLRETLAGTRIKKRIRKNQAKLICVIGCGGDRDRGKRPLIGEI 420

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLV 463
           A  LAD  I+T DNPR+E+P  I +E++ G  G     + +R  AI  AI    K D+++
Sbjct: 421 ASRLADEVIITSDNPRNENPADIISEVMLGASGKHCTSEVDRTAAIYRAIHGARKGDIVL 480

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKG ET   +  G+K    D +++R++L
Sbjct: 481 IAGKGAETSQEI-QGKKYPYDDREVVRQVL 509


>gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
 gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
          Length = 495

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 240/491 (48%), Gaps = 42/491 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79
           Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+         S+
Sbjct: 16  QARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSV 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136
            D +         + V   R  L   A R +G HP     ++ VTGT+GK+S    + Q 
Sbjct: 76  PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 125

Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
               G+ S   G T  +  + Q      TTP  + L + L+ L  +G   V++E SSH L
Sbjct: 126 WHCLGVRSATCG-TLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHAL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD +  
Sbjct: 185 DQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QDVQAAVINVDDPFGL 242

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------P 305
            ++      G R + V   G         A    Q ++++++G  FD +          P
Sbjct: 243 RLLH-GLAKGMRRVGVSVCGH------TDADVMAQHLSLNLQGIGFDLVIGADHASVRSP 295

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT
Sbjct: 296 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHT 355

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+  VTDDNPR ED 
Sbjct: 356 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDG 415

Query: 426 EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I A+I+ G   P  ++ + +R  AI  AI + + +DV+++AGKGHE    V  G +  
Sbjct: 416 DGIVADILAGFARPNVVKVQRDRSAAIAAAIGIASAEDVVLIAGKGHERYQEVA-GVRHP 474

Query: 483 SVDCDIIREIL 493
             D ++ R +L
Sbjct: 475 FDDTEVARRVL 485


>gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991764|gb|EEC57768.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
          Length = 502

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 151/458 (32%), Positives = 232/458 (50%), Gaps = 28/458 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFS-ATIRSNT 90
           ++SDSR + AG  FV I+G   +GH +I   I +GA  IVVSS Y  +Q FS A I  N 
Sbjct: 30  LTSDSRKVTAGGAFVCIMGAVSNGHTYIQDVIGRGAGLIVVSSKYDYMQHFSDAKIPENV 89

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIG 148
            ++  D+TR   +L ++  +G   E +  +  T  K    +   ++ + +  G  +  IG
Sbjct: 90  TVVETDDTRLAYALMSAAWFGYPAEKLFTIGITGTKGKTTTTYMIRNVLESCGHKTGLIG 149

Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              TI     +    TTP    + ++ + +   G   V +E SS GL  +R  GI+   G
Sbjct: 150 TIETIIGDEHKPAHNTTPESYEIQESFAKMVEAGCEAVVMEVSSQGLMLNRTAGIQFNIG 209

Query: 208 SFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            FTN+  DHI  + H + + Y + K +LF +        I+ ADD +   ++    NA C
Sbjct: 210 VFTNIEPDHIGPNEHSSFEDYLSCKAKLFRQC----DIGIVNADDEHVDRILA---NATC 262

Query: 266 RVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGL 321
           RV   G+          K++   H K      V G  + D    +PG F +YN+L A  +
Sbjct: 263 RVEKYGFSETADIRAADKELLYEHGKLGTKYHVSGLVNLDIELCMPGNFSIYNSLCAIAV 322

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV-----GTNSRGGRIYVDYAHTSNSLEMILKNI 376
                +D   + + L  + V  GR + V       + R   I VDYAH + +LE +LK +
Sbjct: 323 TRHFNVDEQRLKKALYDVRV-RGRIDIVDLAEVNASRRDFTIMVDYAHNAMALESLLKTL 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     RI+ VFGCGG+RD+ +R  MG+++  L+D  I+T DNPR+E+PE I A+I+ GI
Sbjct: 382 KEYNPKRIVTVFGCGGNRDRDRRFEMGEVSGRLSDFTIITSDNPRNEEPEAIIADIVTGI 441

Query: 437 P----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                  +E  +R EAI+ A++     DV+VVAGKGHE
Sbjct: 442 SRTSGRHVEIADRREAIKYAVDNAQPGDVIVVAGKGHE 479


>gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas
           maltophilia R551-3]
          Length = 502

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 151/445 (33%), Positives = 216/445 (48%), Gaps = 19/445 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G  FVAI G    G  F+ QA A GA AI+           A + +    + V
Sbjct: 29  DSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGAGAILFEPPAP-----AELPAPVDAIAV 83

Query: 96  DNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
              R  +   A + +G  P   +A   VTGT+GK+S    + Q     G  S  IG    
Sbjct: 84  PGLRARMGAMADQFHGA-PSRAMAMVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGA 142

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +    +    TTP  + +   L+ L   G   V++E SSH LDQ R+D +      FTN
Sbjct: 143 GLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTN 202

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH    +Y  AK RLF    P    A+I  DDA+ +++      AG + + + 
Sbjct: 203 LTRDHLDYHGDMASYGAAKARLFHR--PGLKAAVINLDDAFGRQLFA-GLPAGVQPIGLS 259

Query: 272 YQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +G    + +  A+    +     ++++G+      PL G F V N L  AG   A G  
Sbjct: 260 SRGATDAIVRAEALQLDGRGIAFELAIDGQRAAVQSPLLGRFNVDNLLAVAGTLHAQGQP 319

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A + E L  L  + GR   +G       + VDYAHT ++LE  L ++     G +  VF
Sbjct: 320 LARIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPDALEQALDSLHGHLQGTLFCVF 379

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445
           GCGG+RD GKRP M  IA  LA+  IVTDDNPR ED + I A+I+ G         + +R
Sbjct: 380 GCGGERDTGKRPQMAAIAERLANQVIVTDDNPRGEDGDVIVADILAGFTDASAVTVQRSR 439

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHE 470
             AI  A++  N  D++++AGKGHE
Sbjct: 440 ARAIGLAVKRANAGDIILIAGKGHE 464


>gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
 gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
          Length = 518

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 232/479 (48%), Gaps = 37/479 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPIL 93
           +D+R + AG +F A   +  D H FI  AI +GA A++V      + FS  I  SNT  L
Sbjct: 33  ADTRSLAAGDVFFAYAVDGADNHPFIEGAIERGAAAVLVQP----EGFSGAIDPSNT--L 86

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            V    +     AS  Y    +++L V  TGT+GK+S + ++       G     IG   
Sbjct: 87  AVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGTLG 146

Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       FT
Sbjct: 147 TGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFT 206

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYHQT +AY  AK RLF    P+   A+I  DDA  + ++        R ++ 
Sbjct: 207 NLTQDHLDYHQTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRLLASTQGH-ARTIAY 263

Query: 271 GY---QGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALV 317
           G    QG      +  A+     V  +  G  F          +      G F V N L 
Sbjct: 264 GLDSEQGALQDAPRADALLLASNVRATATGTAFHLSTSEWGDAEVEVQTLGAFNVSNLLG 323

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKN 375
             G  +A  +     L  L KL  V GR + +G   +     + +DYAHT ++LE  L+ 
Sbjct: 324 VLGALLAADVPFEAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLEA 383

Query: 376 IRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +R + + R   +I +FGCGGDRD  KRP+MG IA  +AD  ++T DNPRSEDP+ I  +I
Sbjct: 384 LRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVLTSDNPRSEDPQSIIEQI 443

Query: 433 IHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             G+     K  RIE    AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 444 AAGMKD-ASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 500


>gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
 gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
          Length = 428

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/407 (35%), Positives = 217/407 (53%), Gaps = 28/407 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR IQ G  FVAI+G+  DG LFI +A+  GA +++  +    +    T    
Sbjct: 32  VSNLELDSRAIQQGDSFVAIIGHTVDGRLFIERAVQAGATSVLAQADSEHKHGEVTYIGE 91

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            PI+ +      LS+ A+RLY ++ + ++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 92  VPIIHLYQLDTLLSVIAARLY-QYQQQVIGVTGTNGKTTITQLIAQWIGLLGDKAAIMGT 150

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        ++ + TT S I + + L+ L  QG  + ++E SSHGL Q R+  +    G 
Sbjct: 151 TGNGFLDQLEEAKNTTGSAIDVQRILAKLDQQGAHYTAMEVSSHGLVQGRVAAVPFKLGI 210

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y  AK  LF     +   A++  DD   +  +    +A    +
Sbjct: 211 FTNLSRDHLDYHGTMEGYEAAKKLLFTGHHCEH--AVLNIDDVVGRRWLSERSDA----I 264

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLF-------PLPGEFQVYNALVAAG 320
           +V  +G+    + + A   K   + IS+E   FD  F       PL G+F   N ++A  
Sbjct: 265 AVSVEGRQEGERGLWATTVKYSDSGISLE---FDGYFGQGNLQAPLIGQFNASNLMLAFA 321

Query: 321 LCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +A+G D    +EHL+    KL  V GR E   T S+  +I VDYAHT ++LE  L  +
Sbjct: 322 SLLALGFD----IEHLQQTAPKLQPVLGRMELFQTTSKP-KIVVDYAHTPDALEKALLAL 376

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           R    G++ V+ GCGGDRD+GKRP+M  IA  LAD  I++DDNPRSE
Sbjct: 377 RVHCEGKLWVIVGCGGDRDKGKRPMMAAIAERLADHVILSDDNPRSE 423


>gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila
           RKU-1]
 gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga petrophila RKU-1]
          Length = 490

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 241/483 (49%), Gaps = 45/483 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+ S  ++ G +F+   G K D H  IP+ + +GA A+VV     L DF      
Sbjct: 24  EITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEKEIDL-DF------ 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P + V ++R F +  AS  +    +++L    T       + +      + L      
Sbjct: 77  --PHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHMLTSLGEKGSV 134

Query: 149 PTSTI-----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            T+ +     SS+  D  +TTP  I +  A+      G    ++E SSH L Q R++G++
Sbjct: 135 LTTAVKRILGSSYYDD--ITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVR 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTN+ RDH+D+H T + Y  AK+ LF+ LL  +  AI+        E +    N 
Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGIAIL-------NESLADTFNR 244

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314
             R ++ G            A +    + ++ EG  F    P           G+F  YN
Sbjct: 245 KSRKITFGTSKN--------ADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIGDFNAYN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMIL 373
           A  A      +G D   +   LE    V GRFE V G    G  + VD+AH+ ++LE +L
Sbjct: 297 AAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLL 356

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           KN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LAD+ I+T D+PR EDPE+I  ++I
Sbjct: 357 KNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPRGEDPEQIMEDLI 416

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   I+   +K    D +++ 
Sbjct: 417 KGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFQDREVVE 476

Query: 491 EIL 493
           EI+
Sbjct: 477 EII 479


>gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
 gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
          Length = 504

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 159/465 (34%), Positives = 235/465 (50%), Gaps = 40/465 (8%)

Query: 32  EVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ SDSR I A    +F A  G+  DG  +I +AI  GA+A+V    +  + F      N
Sbjct: 23  QLFSDSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVV----FEKEGFDWNPEWN 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P L V   +   +  A+  Y  +P     ++AVTGT+GK+S   ++ Q     G  +  
Sbjct: 79  VPHLGVMGLKACAASVAAAYY-DYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAV 137

Query: 147 IGPTSTISSFA-------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           IG T  ++ F        ++   TTP  + L + L+ L  + V  V++EASS G+DQ RL
Sbjct: 138 IG-TLGVTVFVNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASSIGIDQGRL 196

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +GI +  G FTN  RDH+DYH    +Y  AK +LF+   P    A++  DD   +E+   
Sbjct: 197 NGIPIDVGLFTNFTRDHLDYHHDMASYKAAKRKLFD--WPGLKHAVLNLDDPMGREL--- 251

Query: 260 AHNAGCRVLSVGYQ----GKFIHLKKVCAI-HNKQQVTISVE--GKDFDFLFPLPGEFQV 312
           A     R+   GY        I + K C I H    +  S++           L G F  
Sbjct: 252 ATALKTRISLTGYTLENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRTRLIGRFNA 311

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L   G+ +A GI     +  L  L    GR + +G       + +D+AHT +++E  
Sbjct: 312 SNVLGVLGVLLAAGIHWDDAVRTLGDLLPPAGRMQQMG-GKNAPLVVIDFAHTPDAMEKG 370

Query: 373 LKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L  +R +    +G++  VFGCGGDRDQGKRP MG ++ + AD  IVT DNPRSEDP++I 
Sbjct: 371 LATLRHVANERNGKLWCVFGCGGDRDQGKRPQMGSVS-ETADFVIVTSDNPRSEDPKEIM 429

Query: 430 AEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +II G+   P   E  +R  AI  A+   ++ DV+ +AGKGHET
Sbjct: 430 KQIISGMEKEPQVYE--DRAMAILQAVRQASQNDVIFLAGKGHET 472


>gi|254468468|ref|ZP_05081874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           1 [beta proteobacterium KB13]
 gi|207087278|gb|EDZ64561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           1 [beta proteobacterium KB13]
          Length = 423

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/396 (33%), Positives = 214/396 (54%), Gaps = 25/396 (6%)

Query: 108 RLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--T 163
           R+YG    +I    VTGT+GK+S A ++  +     LS  +  P+  I + ++D  +  T
Sbjct: 37  RVYGNLNRHIKLYGVTGTNGKTSTAFWLNHL-----LSKLE-KPSKLIGTISKDKVVINT 90

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           TP    L    +    + + +  +E SSHG+DQ R+  +    G FTNL RDH+DYH+T 
Sbjct: 91  TPDLFVLYSLFNKGIQKNIKNFVLEVSSHGVDQGRIHELNFEYGIFTNLSRDHLDYHKTM 150

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHL 279
             YF +K R F E + KES  +I  D++Y   +         ++ + G+      K I++
Sbjct: 151 NNYFLSKERFFIENVKKES--VINIDNSYGMRLANNLIKLNKKIFTFGFSKEANVKIINI 208

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K+    +   + ++ +  K   F   + GEF +YN + A  +C    ID   V E +++L
Sbjct: 209 KQQFLTNKYSEFSLQIANKIHTFKTNVIGEFNLYNLISAICICYLKKIDIHKVTEVIKRL 268

Query: 340 HVVPGRFEFVGT--NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            V  GR   +    N+   ++ +DYAHT + L+ +L+ I+ I  G+I++VFGCGGDRD+G
Sbjct: 269 PVPDGRMNVINKTINNIQKKVIIDYAHTPDGLKKLLQTIKKIYQGKILLVFGCGGDRDKG 328

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML 456
           KR +MG +A   AD   +T+DNPR+E+P +I  +I  G+    +   +R +AI  AI+  
Sbjct: 329 KRKLMGNVANHYADFVCITNDNPRNENPNQIADQICEGVSCLKKIILDRKKAIEYAIKKT 388

Query: 457 NKQDVLVVAGKGHETVHIVTN-----GEKKMSVDCD 487
           N   ++V+AGKGHE   I+ N      +KK+ +D +
Sbjct: 389 N-YPIVVIAGKGHEKYQIIKNKKIDFSDKKVVMDIN 423


>gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
 gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
          Length = 544

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 242/472 (51%), Gaps = 28/472 (5%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKF 101
           +F A+ G +  G  F   A+ +GA AI+   A  L+   A  ++   + P+LV  N R  
Sbjct: 67  LFAALPGARTHGAQFAVDALGRGATAILTDEA-GLELIEAAGKAPDRSVPVLVHPNPRDV 125

Query: 102 LSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQ 158
           L   ++ +YG+  E   ++ +TGTSGK++ +  ++     +G     +G   T I     
Sbjct: 126 LGEISAEIYGRPSEKMQVVGITGTSGKTTTSYLLEAAIAGAGRKPGLVGTIETRIDGRRV 185

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
            + LTTP    L    + ++ QG+  V +E SSH L   R+DGI+   G+FTNL +DH+D
Sbjct: 186 PSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHALALGRVDGIRFDIGAFTNLSQDHLD 245

Query: 219 YHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           +H+  + YF AK RLF+ E   +   A++  DD + + + + A       ++        
Sbjct: 246 FHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDVWGRRMAELAATDESDAVTTVSTSTAE 305

Query: 278 HLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
              KV A+   +  + + E     G+ +     LPG + V NA +A  +  A G+D    
Sbjct: 306 AEWKVGAVEVAEDGSQTFELVGPDGQSWPVSLRLPGRYNVANAALALTVSFAAGLDPDAA 365

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           +  L  + V PGR + +    RG      VDYAH   +LE ++  +R    GR+ VV G 
Sbjct: 366 VRALGTVDV-PGRVQRI---DRGQSFLAVVDYAHKPAALEAVIATLRNQVPGRVAVVVGA 421

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IP----GFI-EK 442
           GGDRD GKR +MG+     AD+ IVTDDNPR+EDP KIRA ++ G   +P    G I E 
Sbjct: 422 GGDRDAGKRTLMGEAGARGADLLIVTDDNPRTEDPAKIRASVMQGAIDVPESERGEIREV 481

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           G+R  AI  A+      DV++VAGKGHE    + +G K    D +++ E++G
Sbjct: 482 GDRALAIEQAVRWAQPGDVVLVAGKGHEVGQEI-DGVKHPFDDREVLGEMIG 532


>gi|319941796|ref|ZP_08016118.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804729|gb|EFW01596.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
          Length = 510

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 165/483 (34%), Positives = 235/483 (48%), Gaps = 36/483 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G IF A+ G K DG  FI       A        Y  +          P   V
Sbjct: 25  DSREVKPGDIFCAVPGEKVDGRTFI----RVAAARGAAGVIYEAETSQRPEHYPLPAKPV 80

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           ++ R+ L   A+R Y +   ++  +AVTGT+GK++   +   +    G  S  IG     
Sbjct: 81  EHLRERLGEIAARFYDEPSAHMTGVAVTGTNGKTTTTFWTASLLTALGSPSGIIGTVGVF 140

Query: 154 SSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +  Q     LTTP    L   L  L   G     +EASS GLDQ R+ G     G FTN
Sbjct: 141 FAGRQIPAPHLTTPDAASLQGILKDLEETGAKSFVMEASSVGLDQGRMKGTHFKVGVFTN 200

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYHQT +AY  AK  LF    P    A++ A DA+S++    A   G  +   G
Sbjct: 201 LSRDHLDYHQTMEAYGEAKGLLF--AWPGLKAAVLNASDAWSRKYADAAQKNGSEIWVTG 258

Query: 272 YQGK------------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +G+             +  K++   H   + T+  + ++F       G F V NAL AA
Sbjct: 259 LEGEAASFGQAFGAAHVLEAKQIEPSHRGMRFTLVCDKREFPVELHALGTFNVDNALEAA 318

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE----MILKN 375
               A G     V+  LE L   PGR +   ++     + VD+ HT ++LE     ++ N
Sbjct: 319 AAAAACGHPIEKVVRALEALTPPPGRMQIFESDGMPLGV-VDFGHTPDALEKAIECLIPN 377

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    GR+  VFGCGGDRD GKRPIMG+IA  L+D  IVT DNPR+E+P+ I   I+ G
Sbjct: 378 ARA-RGGRLWTVFGCGGDRDAGKRPIMGEIAARLSDQVIVTSDNPRTENPQAIVDAIMQG 436

Query: 436 ---IPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              +PG  ++     +R EAI  A+   + +D+++VAGKGHE   I+ +G     VD ++
Sbjct: 437 VQAVPGADQRTMAVVDRREAIHRAVFAADAKDIILVAGKGHECEQILNDGPHHF-VDGEV 495

Query: 489 IRE 491
           +RE
Sbjct: 496 LRE 498


>gi|163785113|ref|ZP_02179819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879617|gb|EDP73415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 314

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/315 (38%), Positives = 179/315 (56%), Gaps = 9/315 (2%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI- 245
           +E SSH   Q R+ G+    G FTNL +DH+DYH+  ++YF AK   F+ +L K   A+ 
Sbjct: 1   MEVSSHAAHQMRIYGLNFEGGIFTNLTQDHLDYHKDMESYFKAKKMFFDYILEKNKKAVF 60

Query: 246 -IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            I  DD Y + + ++  N    V+S G + +   +  +         T+S +GK F+   
Sbjct: 61  SINVDDFYGERLYRQLKNI-ANVISYGRKSEEFKIIDMQTQPEGCFFTVSFQGKRFNLYS 119

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+F +YN   A       GID   + E   KL  + GRFE V   S+   +  DYAH
Sbjct: 120 KLRGDFNIYNISAAFSFLARYGIDIEFLKEATAKLKPIRGRFEIV--YSKDFLVVNDYAH 177

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE ILK+I+ +  GR+IVVFG GGDRD+ KRP MGKIA +LAD+ ++T DNPRSED
Sbjct: 178 TPDALENILKSIQKLKRGRLIVVFGAGGDRDKTKRPKMGKIAEELADVIVLTSDNPRSED 237

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I   I  G+      +E  +R +AI+ AI+M  + DV+++AGKGHET  I+ +    
Sbjct: 238 PKDIIENIKAGMENKKPLLEIIDREQAIKEAIKMAKENDVVLIAGKGHETYQIIGDNIYH 297

Query: 482 MSVDCDIIREILGLI 496
              D D+ ++ L + 
Sbjct: 298 FD-DSDVAKKYLKMF 311


>gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
 gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
          Length = 484

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 148/470 (31%), Positives = 225/470 (47%), Gaps = 45/470 (9%)

Query: 29  KINEVSSDSR-HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +I+ ++SD+R  ++AG +FV I G   DGH    Q + +G   +V      L+       
Sbjct: 25  EISGITSDTRAEVKAGGMFVCIKGKTFDGHDAAQQMLDKGCAVVVCERDLGLE------- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                +VV +TR    +  +  +G HPE    ++ VTGT+GK+++ + ++++    G   
Sbjct: 78  ---RQIVVSDTRAAFPMLCAAWFG-HPERELELIGVTGTNGKTTITTVIKKVLSGFGCKV 133

Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   + I         TTP P  L +    ++  G  +  +E SS GL+Q R+ G  
Sbjct: 134 GLIGTCQNEIGEEIIPTARTTPEPYDLFELFRRMADAGCKYTVMEVSSQGLEQKRVQGCH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL +DH+D H T + Y+ AK  LF+        AII  DD Y +   + A   
Sbjct: 194 FKVGVFTNLTQDHLDVHGTMENYYQAKKMLFD----ISDSAIINIDDEYGR---RYAKEI 246

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYN 314
            C   S    G         A    Q V +   G  + F          F +PG F V N
Sbjct: 247 PCPYKSYSVNGS--------ADFMAQDVMLGTAGVKYVFDDGRVKKNVSFNMPGLFNVSN 298

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L        +G      +   EK+  V GR E V T  R   +  DYAHT ++L  +L 
Sbjct: 299 SLAVIACMEVLGYTPCQTIREFEKIQGVRGRAEIVPT-GRDFTVICDYAHTPDALINVLS 357

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I+    G++  +FGCGG+RD+ KR  M   A + AD  IVT DNPR+EDP++I  +++ 
Sbjct: 358 AIKEGAKGKVKCLFGCGGNRDRTKRAPMAAAAAEHADFLIVTSDNPRNEDPDEIINDVME 417

Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           G+ G    ++   +R EAI  A++   K D++V+AGKGHE   I+  G K
Sbjct: 418 GLKGKDTPYVRITDRREAIHWAVKNAEKDDIIVLAGKGHEDYQILAGGVK 467


>gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Delftia acidovorans SPH-1]
 gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans
           SPH-1]
          Length = 509

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 245/477 (51%), Gaps = 44/477 (9%)

Query: 23  MQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +QW   R +    + +DSR ++ G  F+A  G   DG   +  A+ +GA A +V +    
Sbjct: 17  VQWLAARLQGSGTLQTDSRKVRPGDAFIAWPGGATDGRAHVASALERGAMACLVEA---- 72

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQ-- 134
           Q   A   S   I  +   +    L A + + +HP    ++LAVTGT+GK++ A ++   
Sbjct: 73  QGVEAFGFSGEHIAALPGLKAATGLIADQWF-QHPSAQIDVLAVTGTNGKTTTAWWLAHA 131

Query: 135 ----QICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               ++ +RSG +   +  +G    I    +   +TTP P+ L +A    +  G+   ++
Sbjct: 132 LAQVKLQERSGCALVGTLGVG----IPPAMESTGMTTPDPVRLQRAFREYADAGLAACAI 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASS G+ +HRLDG ++    FTN  +DH+DYH + QAY++AK  LF+   P    A++ 
Sbjct: 188 EASSIGIVEHRLDGTRIRVALFTNFTQDHLDYHGSMQAYWDAKAALFD--WPGLQAAVVN 245

Query: 248 ADDAYSKEVM----KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDF 302
            DDA+   +      R   A   V S+  +G   +  K +         T+   G     
Sbjct: 246 VDDAHGARLWATLQSRKQPAALDVWSISIEGAARLQAKDIALGAEGLSFTVIEAGHSLRM 305

Query: 303 LFPLPGEFQVYNAL--VAAGLCIAIGIDSAL-VLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + G++ V N L  +AA  C+ + +D A+    HLE    VPGR + +        + 
Sbjct: 306 HTRMVGQYNVSNLLGVLAALRCLGLTLDQAVAACVHLEP---VPGRMQQI-VQPGQPLVA 361

Query: 360 VDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           VDYAHT ++L+  L+ +R       GR+  VFGCGGDRD  KRP+MG+ A   AD  +VT
Sbjct: 362 VDYAHTPDALDKALRALRPAAEQRRGRLWCVFGCGGDRDATKRPLMGQAAQKNADCVLVT 421

Query: 417 DDNPRSEDPEKIRAEIIHGI-PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            DNPRSE P++I  +I+ G+ PG     + +R  AI  AI   +++DV+++AGKGHE
Sbjct: 422 SDNPRSEVPDRIIDQILAGMQPGENLQSQADRAAAIAQAIAHASERDVVLIAGKGHE 478


>gi|296117533|ref|ZP_06836117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969264|gb|EFG82505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 562

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 249/514 (48%), Gaps = 79/514 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRS 88
           ++ ++ DSR +++  +F A+ G +  G  F  Q     A+A++  +A   + + S T  S
Sbjct: 24  VDAITLDSRLVESEHLFAAVPGTRTHGAEFAAQT---SAKAVLTDAAGVDILNGSDTAES 80

Query: 89  -NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + PI+VVD+ R  L   ++ +YG   +N  +L VTGTSGK++    ++     +G S+ 
Sbjct: 81  FDRPIIVVDDIRAVLGDISAEIYGHPTQNLTVLGVTGTSGKTTTTYLLESGLLAAGYSTG 140

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG T T I+    D +LTTP    L +  + +  +GVTHV +E SSH LD  R+ G+  
Sbjct: 141 LIGTTGTRINRTPVDTQLTTPEAPTLQELFARMVDEGVTHVVMEVSSHALDLGRVQGVDF 200

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--------------------------EELL 238
             G FTNL +DH+D+H T + YF+AK +LF                           E +
Sbjct: 201 AVGGFTNLSQDHLDFHPTMEEYFSAKAKLFVGNNAARHAVVCINDDWGERLADQVDAEDI 260

Query: 239 P----KESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           P      + AI++  D    A + E+++       R   +   G  +  ++      +QQ
Sbjct: 261 PLTVVSTTGAIVHTGDEGSVAEADEMLRE------RTRELLVPGTVVAWQQSVETTGEQQ 314

Query: 291 VTISVE------------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           V + +              + FDF  PLPG+F + NA +A G+  A GID    +  L K
Sbjct: 315 VALEINPPRESEVIQAEMARSFDFRLPLPGDFNIANAGLAVGMASAAGIDLDTFITALTK 374

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-------ITSGRIIVVFGCG 391
           +  VPGR + +    +     VDYAH   ++E +L+ +R+          GR+ VV G G
Sbjct: 375 V-AVPGRMQRI-DEGQDFVAVVDYAHKPAAIEAVLETLRSQLESAGNTAQGRLGVVVGAG 432

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------- 444
           GDRD  KR +MG  A   AD  +VTDDNPR+EDP  IR  ++ G     E+ N       
Sbjct: 433 GDRDSSKRGLMGAAAAKAADFVVVTDDNPRTEDPAPIREAVMAGAREAAEESNRPVEIVE 492

Query: 445 ---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
              R +AI   +   +  D ++V GKGHE   ++
Sbjct: 493 IASRADAIDAVVNWAHDGDAVIVVGKGHEVGQLI 526


>gi|254430365|ref|ZP_05044068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
 gi|197624818|gb|EDY37377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
          Length = 500

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 241/478 (50%), Gaps = 32/478 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  ++ +S DSR +  G +FV + G + DG  +   A+  GA A VV +A +  D  +T 
Sbjct: 22  EATVHTISCDSRRVGPGTLFVGLPGTQVDGGAYWRSALKSGACAAVVGTAAAAADPPST- 80

Query: 87  RSNTPILVVDN-TRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGL 142
               P++VV+    ++  L A+  +G+ P   LA+ G +G +   +    ++ +   +G 
Sbjct: 81  --TDPVVVVEGPVARWAGLLAAAFWGE-PSQRLALIGVTGTNGKTTTTHLIEHLAATAGT 137

Query: 143 SSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +   G   +    +A   + TT     L   L+  +  G    ++E SSH LDQ R+ G
Sbjct: 138 PAALFGTLENRWPGYAVTAQHTTAFADLLQAQLAQAADAGARIGAMEVSSHALDQQRVAG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESP-AIIYADDAYSKEVMK 258
            +     FTNL +DH+DYH + +AYF AK  LF    LL   +P A++  DD +  ++  
Sbjct: 198 CRFAGAVFTNLTQDHLDYHPSMEAYFAAKASLFAAPLLLESATPNAVVNGDDPWGAQL-- 255

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQV 312
            A   G R  +   +    HL+    I + +  +  V G+         F  PL G F +
Sbjct: 256 -ARQLGERCWTSSLEDPSAHLR----IDSLEMDSSGVRGRLVTPLGAGHFRSPLLGRFNL 310

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370
            N L A G     G+   ++LE L     VPGR E V    R  +  + VDYAHT + LE
Sbjct: 311 MNLLQAVGALAQQGLPLPMLLEGLASFRGVPGRMERVLAGGREDQPAVLVDYAHTPDGLE 370

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R  T GR+I VFGCGGDRD+GKRP MG IA  LAD  +VT DNPR+EDP++I  
Sbjct: 371 NALRASRPFTRGRLICVFGCGGDRDRGKRPQMGAIAARLADRVVVTSDNPRTEDPQRILD 430

Query: 431 EIIHGIPGFIEKGNRIE---AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +++ GIP   E    ++   AI  AI      D++++AGKGHE   I+  G  K+  D
Sbjct: 431 DVVAGIPAGTELEVEVDRARAIAAAIAGAGPTDLVLIAGKGHEDYQIL--GTTKIHFD 486


>gi|313500442|gb|ADR61808.1| MurE [Pseudomonas putida BIRD-1]
          Length = 496

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 161/485 (33%), Positives = 245/485 (50%), Gaps = 42/485 (8%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +F    R+  I E++ DSR+++ G +F+A+ G K DG     + IA        + AY  
Sbjct: 9   LFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGR----EHIADALARGAAAVAYEE 64

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135
           Q  +    ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q  
Sbjct: 65  QGANVLPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124

Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             + QR GL    IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH
Sbjct: 125 DLLGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSH 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L+Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DD +
Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDDF 238

Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFL 303
            + +           +   R+LS   +     L   + V +    +   ++ +G+     
Sbjct: 239 GRRLAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATIVTAQGERI-LR 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             L G F + N  + A +   + +D AL  +L+   +L    GR + +G   +   + VD
Sbjct: 298 SQLLGRFNLSN--MLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKP-LVVVD 354

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR
Sbjct: 355 YAHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPR 414

Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +EDP +I  +I    PGF    +      R EAI   I      DV+V+AGKGHE    +
Sbjct: 415 TEDPLRIFDDI---RPGFTRPDDVEYVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI 471

Query: 476 TNGEK 480
            NGE+
Sbjct: 472 -NGER 475


>gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
 gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
          Length = 975

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 162/471 (34%), Positives = 227/471 (48%), Gaps = 38/471 (8%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           ++DSR +Q G +FVA  G   D   F+         A  +  A   Q F  T   +  IL
Sbjct: 27  TADSRSLQPGEVFVAWPGAARDPRQFV-AQALAAGAAAALVEAEGAQYFGFT---DPRIL 82

Query: 94  VVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            VD  +      A+  YG HP  +   LAVTGT+GK+S A +  Q    +G     IG  
Sbjct: 83  AVDGLKALAGPLAAAWYG-HPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTL 141

Query: 151 STISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                 A Q    TTP P+ L   L+ L  QG    ++EASS GLD+HRL G  + A +F
Sbjct: 142 GAGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAF 201

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH    AY  AK  LF  + P    A++  DD Y+  V+     A CR  S
Sbjct: 202 TNLTQDHLDYHGDMAAYARAKRALF--VWPGLQHAVLDIDDPYAASVLL----ADCR--S 253

Query: 270 VGYQGKFIHL--------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            G Q +   L        + V      Q++T+           P+ G F + N LV A L
Sbjct: 254 RGQQVQTTALIAKADWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAAL 313

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTIT 380
               G+D A +   L  +  VPGR + +G    G  + V DYAHT ++L   L+ +R +T
Sbjct: 314 LHTTGLDDAAIAAALRTVRAVPGRMQMLG--GIGAPLAVIDYAHTPDALYKALQALRPVT 371

Query: 381 S---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
           +   G++  VFG GGDRD  KRP+M + A   AD  ++T DNPRSE P  I  +++ G+ 
Sbjct: 372 AKRKGKLWCVFGAGGDRDARKRPLMAQAAEAHADRVVLTSDNPRSEAPGAILQDLLAGLQ 431

Query: 437 -PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            P     IE  +R  AI   +      DV+++AGKGHE    +   ++  S
Sbjct: 432 QPAQALLIE--DRAAAIAQTLSHAAVHDVVLIAGKGHENTQEIAGHKQAFS 480



 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 23/135 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ + +DSR +  G +FVA+ G + D H F+PQA A GA A++     +           
Sbjct: 520 VSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAAGARALLAEQGVAA--------CG 571

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +   +T +   L A     +    ++AVTG++GK++V   +  I     L+++Q   
Sbjct: 572 LPGIEAPDTLRAFGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASI-----LAAWQ--- 623

Query: 150 TSTISSFAQDNRLTT 164
                   QD RL T
Sbjct: 624 -------GQDRRLAT 631


>gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
 gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
          Length = 496

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 161/485 (33%), Positives = 244/485 (50%), Gaps = 42/485 (8%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +F    R+  I E++ DSR ++ G +F+A+ G K DG     + IA        + AY  
Sbjct: 9   LFAHASRDPLIRELTLDSRSVRPGDLFLAVPGAKVDGR----EHIADALARGAAAVAYEE 64

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135
           Q  +    ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q  
Sbjct: 65  QGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124

Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             + QR GL    IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH
Sbjct: 125 DLLGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSH 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L+Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DD +
Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDDF 238

Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFL 303
            + +           +   R+LS   +     L   + V +    +   ++ +G+     
Sbjct: 239 GRRLAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATLVTAQGERI-LR 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             L G F + N  + A +   + +D AL  +L+   +L    GR + +G   +   + VD
Sbjct: 298 SQLLGRFNLSN--MLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKP-LVVVD 354

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR
Sbjct: 355 YAHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPR 414

Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +EDP +I  +I    PGF    +      R EAI   I      DV+V+AGKGHE    +
Sbjct: 415 TEDPSRIFDDI---RPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI 471

Query: 476 TNGEK 480
            NGE+
Sbjct: 472 -NGER 475


>gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 512

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 161/516 (31%), Positives = 256/516 (49%), Gaps = 49/516 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +S DSR   A   F+A+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAKGT 61

Query: 69  EAIVVSSAYSLQDFSAT---IRSNTP-ILVVDNTRKFLSLFASRLYG-KHPENILAVTGT 123
           + +++S     Q   AT        P I  V+N ++ LS  A   Y  K P+NI+ +TGT
Sbjct: 62  K-LILSDKLPRQSSIATSSVAEGELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGT 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+S++S++ Q+ +  G  S  +G     I    Q++  TT   + L + +SY   +  
Sbjct: 121 NGKTSISSYIAQLQKLIGQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISYY--KNY 178

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++ +E SSH LDQ R +G+      F+NL  DH+DYH+T   YF AK +LF+       
Sbjct: 179 QNLVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FRSLK 236

Query: 243 PAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            A+I  DD Y +++ +  + +  R      S+    K+  ++ +      ++  I +E K
Sbjct: 237 KAVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKY-SIEIITVSLKSRRADIYIESK 295

Query: 299 D-------FDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSAL---VLEHLEK 338
                   FD              L GEF + N     GL +A   DS+    +LE++ K
Sbjct: 296 SIENMQTSFDLYISQKYMGTYQTSLVGEFNLMNL----GLSLAALDDSSTREQLLENISK 351

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           L  V GR E +     G +I +DYAHT ++LE  L+ +       +  +FGCGG+RD  K
Sbjct: 352 LKPVKGRMEVIAL-VNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTK 410

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAI 453
           RPIM +IA + A   ++T+DN R E  E I  +I  G        FI+  +R EAI+  I
Sbjct: 411 RPIMAQIAEEYASKIVITEDNNRFESIESIFDDIKKGFSHPDKHTFID--SREEAIKYTI 468

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           E     DV+++AGKGHE  ++  NG K+   + D+I
Sbjct: 469 ENSKANDVILLAGKGHE-CYLDKNGIKEYFDERDVI 503


>gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella piezotolerans WP3]
 gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans
           WP3]
          Length = 488

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 227/462 (49%), Gaps = 20/462 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            N+++ DSR ++AG +FVA+ G + DG  +I  A+  GA A++V +    +  + +    
Sbjct: 19  FNDLTLDSRALKAGDLFVAVPGYQVDGRQYIQAALDNGAAAVLVHTDSPEEHGNISTDDG 78

Query: 90  TPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             I      R+ +S+ A++ Y    K P+ I+ VTGT+GK+SV   + Q+ Q     +  
Sbjct: 79  LLISFFQLNRQ-VSVLAAQAYPLSSKRPK-IIGVTGTNGKTSVTQLIAQLQQLQSKQTAV 136

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +     D+  TT   I L K L           ++E SSHGL Q R++ +   
Sbjct: 137 MGTLGNGLWGELVDSGNTTADAITLIKQLQNFEKSHADTCAMEVSSHGLVQGRVEAVPFD 196

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH T +AY  AK RLF          +I  DDA     + +A +   
Sbjct: 197 VAVFTNLSRDHLDYHHTMEAYGAAKQRLFT--FSSLRAGLINCDDAIGASWLAQATSTKT 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              S+    K     K C  H+     T+     +     PL G+F + N + A G    
Sbjct: 255 LGFSIKGNTKADIYAKQCLYHDGGVTCTLVWPEGEAKLQSPLLGDFNLSNLVAALGALYL 314

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G D A ++     L  V GR E   T S    + VDYAHT +++E  L+ +R      +
Sbjct: 315 VGEDMAAIVRLASALTPVAGRMERF-TTSGNVTLVVDYAHTPDAIEQALQALRVHCKSEL 373

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--- 441
             +FGCGGDRD GKRP+M   A   AD  +VT DN RSE+PE I A++     GF E   
Sbjct: 374 WCLFGCGGDRDSGKRPMMASSAEQFADHVMVTSDNARSENPEDIIADV---FSGFTEPQK 430

Query: 442 ---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
              + NR  AIR  + +    D++++AGKGHET   V NGEK
Sbjct: 431 AQSQVNRKTAIREVVALAKPGDMVLLAGKGHETYQEV-NGEK 471


>gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 464

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 227/445 (51%), Gaps = 34/445 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +++  Q G +F+A+ G    G  +I QAI +G  AI+V S          I    P + +
Sbjct: 25  NAQSTQPGDLFIALQGKLTHGADYINQAIDKGCVAILVDSK--------EIECVIPSIRI 76

Query: 96  DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           DN  ++L   A+  Y    + NI+++TGT+GK+SVA F+ Q+  + G+ +  IG T  I+
Sbjct: 77  DNLSQYLQTLANTFYKNAIKVNIISITGTNGKTSVAYFISQLLTKLGIKNGLIG-TLGIT 135

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
              Q +  TTP  + L + L       + H  +E SSH L Q R+ G+ +    FTNL +
Sbjct: 136 HSQQLSLNTTPDILTLYQVLDNYYQNNIHHAILEVSSHALTQDRIAGLNIKQAIFTNLTQ 195

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+DYH T   Y   K +LF  +L      I+  DD++ K  +    +      S+G   
Sbjct: 196 DHLDYHHTLDKYQATKEKLF--VLDTVESVILNQDDSHYKHFLNITKDKKRISYSLG--- 250

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            F  +K +       +    V+   + F  P  GEF + N L A     A+G     ++ 
Sbjct: 251 DFDSIKTI-------EQGFLVQLDHYVFEIPFLGEFNLLNILAALNSVEALGFKRDDIIP 303

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGD 393
              +L   PGR + +         ++DYAHT +++   +  ++    + +I +VFGCGG+
Sbjct: 304 LFYQLLPPPGRMQRI----EPHLAWIDYAHTPDAIGNAITTLKKHYPNFKIRIVFGCGGN 359

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEA 448
           RD+ KR  MGKIA +LAD  I+T+DNPRSE+P+ I   I+ GI        IE  NR  A
Sbjct: 360 RDKDKRAEMGKIASNLADTIILTNDNPRSENPKTIIENILSGIDDSYKLDIIE--NRQLA 417

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVH 473
           I TAI  L + + L++AGKGHET+ 
Sbjct: 418 IETAITTLKENECLLIAGKGHETIQ 442


>gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
 gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
          Length = 492

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 234/465 (50%), Gaps = 28/465 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +FVAI G++ DG  FI +AI +GA A++   A  L +F     S   + +V
Sbjct: 26  DSRDVNPGDVFVAIKGHELDGGQFIAKAIEKGAVAVI---ADRLCEFDVAFES---LYLV 79

Query: 96  DNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               K L+  ASR Y K  H  +++ VTGT+GKS+  + +  + Q     S  IG   T+
Sbjct: 80  SELDKKLAELASRFYDKPSHNLDLIGVTGTNGKSTTTAMIAHLAQYCNTQSAIIG---TL 136

Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                DN      TTPS + L   LS L       V++E SSHGL QHR+   +  A  F
Sbjct: 137 GFGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLVAMEVSSHGLVQHRVAQCQFKAAVF 196

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--HNAGC-- 265
           TNL RDH+DYH    +Y +AK+ LF +  P+    ++  DD  + + +++   +N  C  
Sbjct: 197 TNLSRDHLDYHGDMASYGDAKLMLFRDFDPQ--LVVLNQDDNQAGQWLEKYDFNNLICYG 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R        ++++   V          +S    D     PL GEF +YN   A    + +
Sbjct: 255 RKNLAPKNAQYVYFSDVDYSDEGISAQLSTSWGDIKVKSPLFGEFNLYNLTAALATLLGL 314

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     ++   ++L  V GR +      +   + VDYAHT  +L + L+ ++    G + 
Sbjct: 315 GYPLEQLIAGCQQLQPVAGRMQAFSVAGKPTCV-VDYAHTPEALALALQALQKHVPGGVS 373

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442
            VFGCGGDRD+GKR +M + A   A+  I+T DNPRSEDP  I AE+  G+        +
Sbjct: 374 CVFGCGGDRDKGKRVLMAQAAEKNANKVIITSDNPRSEDPNVIIAEVASGLAAPQSAHLE 433

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            +R  AI  AI      +V+++AGKGHE   I+  G++++   CD
Sbjct: 434 ADRASAISYAINNAASNEVVLIAGKGHEDYQII--GDERIDF-CD 475


>gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
          Length = 496

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 162/471 (34%), Positives = 230/471 (48%), Gaps = 46/471 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79
           Q R+  I+ +  DSR +Q G  FVA+      G  FI  A A+GA AI+         S+
Sbjct: 16  QARDVVISGLVMDSREVQPGDAFVALARFGAHGLCFIEDACARGAVAILFEPPAPQGVSV 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136
            D +         + V   R  L   A R +G HP     ++ VTGT+GK+S    + Q 
Sbjct: 76  PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 125

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             R G+ S   G   T+     D +L     TTP  + L + L  L   G   V++E SS
Sbjct: 126 WHRLGVRSATCG---TLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 182

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD 
Sbjct: 183 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QGVQAAVINVDDL 240

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------- 304
           +   ++   H     V  VG          V A    Q ++++++G  FD +        
Sbjct: 241 FGLRLL---HGLAKGVRRVGVSACGHTDADVMA----QHLSLNLQGIGFDLVIGADRAPV 293

Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G F V N L  AG+  A+    + +   L  L  + GR   +G       + VDY
Sbjct: 294 RSPLMGRFNVDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPMVVVDY 353

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++L  +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR 
Sbjct: 354 AHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRG 413

Query: 423 EDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ED + I A+I+ G   P  ++ + +R  AI  AI + +  DV+++AGKGHE
Sbjct: 414 EDGDGIVADILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHE 464


>gi|229490463|ref|ZP_04384304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
 gi|229322753|gb|EEN88533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
          Length = 544

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 154/472 (32%), Positives = 246/472 (52%), Gaps = 28/472 (5%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKF 101
           +F A+ G +  G  F   A+ +GA AI+   A  L+   A  ++   + P+LV  N R  
Sbjct: 67  LFAALPGARTHGAQFAVDALGRGATAILTDEA-GLELIEAADKAPDRSVPVLVHPNPRDV 125

Query: 102 LSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQ 158
           L   ++ +YG+  E   ++ +TGTSGK++ +  ++     +G     +G   T I     
Sbjct: 126 LGEISAEIYGRPSEKMQVVGITGTSGKTTTSYLLEAAIAGAGRKPGLVGTIETRIDGRRV 185

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
            + LTTP    L    + ++ QG+  V +E SSH L   R+DGI+   G+FTNL +DH+D
Sbjct: 186 PSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHALALGRVDGIRFDIGAFTNLSQDHLD 245

Query: 219 YHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA----HNAGCRVLSVGYQ 273
           +H+  + YF AK RLF+ E   +   A++  DD + + + + A     +A   V +   +
Sbjct: 246 FHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDVWGRRMAELAATDESDAVTTVSTSTAE 305

Query: 274 GKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            ++ +   +V    ++    +  +G+ +     LPG + V NA +A  +  A G+D    
Sbjct: 306 AEWTVGAVEVAEDGSQTFELVGPDGQSWPVSLRLPGRYNVANAALALTVSFAAGLDPDAA 365

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           +  L  + V PGR + +    RG      VDYAH   +LE ++  +R    GR+ VV G 
Sbjct: 366 VRALGTVDV-PGRVQRI---DRGQSFLAVVDYAHKPAALEAVIATLRNQVPGRVAVVVGA 421

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IP----GFI-EK 442
           GGDRD GKR +MG+     AD+ IVTDDNPR+EDP KIRA ++ G   +P    G + E 
Sbjct: 422 GGDRDAGKRALMGEAGARGADLLIVTDDNPRTEDPAKIRASVMQGAMDVPESERGEVREV 481

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           G+R  AI  A+      DV++VAGKGHE    + +G K    D +++ E++G
Sbjct: 482 GDRAAAIEQAVRWAQPGDVVLVAGKGHEVGQEI-DGVKHPFDDREVLGEMIG 532


>gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas
           atlantica T6c]
 gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 530

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 240/481 (49%), Gaps = 31/481 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F +Q  +  I  +  DSR +     F+A+ G+  DG  FIPQAI+ GA+ I+       +
Sbjct: 37  FGIQAGDITIESLVLDSRDVAIHSAFIALKGHVRDGRDFIPQAISLGAKVIIAECETQAE 96

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC- 137
               ++R  + I+   +    LS  A+  YG   ++I  + VTGT+GK+S      Q+  
Sbjct: 97  HGHTSMREQSLIISFYDLSAQLSALAAAFYGYPAKSIQVIGVTGTNGKTSTVQLTSQLAA 156

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               + + + +   G      + A  N    TTP  I + K ++  +   V  V++E SS
Sbjct: 157 LLNKRAASIGTLGSGVIDQSGACASHNETANTTPDAISMHKLMAQFAQDQVKQVALEVSS 216

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L Q R+  +K      TNL RDH+DYH T QAY  AK  L ++  P+   A++  ++ 
Sbjct: 217 HALVQQRVAALKTDVAVLTNLTRDHLDYHGTMQAYAQAKRELLKQ--PELRFAVLNGNEI 274

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DF 302
            SK  + +  +A   V+  G   + + L         + V  S +G  F         D 
Sbjct: 275 ESKHWLAQLPSAVTPVI-YGIADESLMLTDAEHQCLAKDVVYSNQGCRFKLVSSWGECDI 333

Query: 303 LFPLPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIY 359
              L G F ++NAL  +A+ LC+   ++   + +H   L  V GR E F G NS    + 
Sbjct: 334 QLSLLGRFNIFNALAAIASQLCLGESLND--IAKHAHLLVPVTGRMERFGGDNSP--TVV 389

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++L+  L  +R  + GR+ V+FGCGGDRD GKR +MG++A   AD   +T+DN
Sbjct: 390 VDYAHTPDALKQALVALRQHSQGRLSVIFGCGGDRDTGKRSLMGEVAETYADDMTITNDN 449

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            RSEDP  I  +I+ G   P  ++   +R  AI  A+      D+++VAGKGHE   I+ 
Sbjct: 450 SRSEDPTAIATDILSGCVHPEKVQVVLDRKAAIEQAVLNATANDIILVAGKGHEDYQIIG 509

Query: 477 N 477
           N
Sbjct: 510 N 510


>gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
 gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
          Length = 492

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 160/473 (33%), Positives = 247/473 (52%), Gaps = 32/473 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +NE+  DSR ++ G +FVAI G++ DG  FI +AI  GA AI+   A  L +F +     
Sbjct: 20  VNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIENGASAII---ADRLCEFESDFE-- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+ +V    K L + AS+ Y +  +  +++ VTGT+GKS+  + +  + Q     +  I
Sbjct: 75  -PLYLVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKSTTTAMIAHLAQFCHTQAAII 133

Query: 148 GPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T+     DN    + TTPS + L + LS L ++    V++E SSHGL QHR+D   
Sbjct: 134 G---TLGYGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLVAMEVSSHGLVQHRVDQCY 190

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-VMKRAHN 262
             A  FTNL RDH+DYH   Q+Y +AK+ LF +        I+  DD  +++ + K + N
Sbjct: 191 FKAAVFTNLSRDHLDYHGDMQSYGDAKLMLFRDF--DADHVILNQDDGQAEQWIEKYSFN 248

Query: 263 A----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +    G + L+     +F++   V          ++    D     PL GEF +YN   A
Sbjct: 249 SLICYGRKNLAPK-NAQFVYFSDVQYSATGISAQLTTSWGDVAIKSPLFGEFNLYNLTAA 307

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +A+G     ++   E L  V GR +     S    + VDYAHT ++L + L+ ++ 
Sbjct: 308 LATLLALGYPLTQLVAGCEYLQPVAGRMQAFTAPSMPTCV-VDYAHTPDALALALQALQQ 366

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
              G +  VFGCGGDRD+GKR +M + A   AD  I+T DNPRSEDP  I  ++  G+  
Sbjct: 367 HVPGGVSCVFGCGGDRDKGKRVLMAQAAEQFADKVIITSDNPRSEDPNDIINDVAAGLEH 426

Query: 438 ---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                +E  +R  AI+ AI+     +V+++AGKGHE   I+  G+ ++   CD
Sbjct: 427 PENAHLE-ADRGAAIQFAIDNAKAGEVILIAGKGHEDYQII--GDTRIDF-CD 475


>gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
          Length = 497

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 161/487 (33%), Positives = 247/487 (50%), Gaps = 32/487 (6%)

Query: 9   KDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           ++  ++I QL  ++      +R +++++ DSR    G +F+ I G   DGH ++ +A AQ
Sbjct: 3   RNLQDVIRQLPGAVVTGNGADRTVSDLTIDSRTAGPGSLFICIKGVNTDGHKYVAKAAAQ 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTS 124
           GA A +      + D    IR       V +T++ +   A   Y        ++ VTGT+
Sbjct: 63  GAVAALTEQETEVPDGMTVIR-------VPSTQEAVKTLAPWFYDWPARKMRMIGVTGTN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  + ++ +  R+G     IG  +  I    + +  TTP  + L K L  +      
Sbjct: 116 GKTTTTNILRTLLTRTGHKVGLIGTINVMIGDEVRTSHNTTPDVVDLQKMLYEMVENHCD 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SSH L   R+ GI+      TN+ +DH+D+H+T + Y  AK  LF  L     P
Sbjct: 176 TCVMEVSSHALALDRVAGIEYDTAVLTNITQDHLDFHKTMENYREAKALLFTRLHEGTKP 235

Query: 244 ---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVE 296
              A+  +DD  S  +M R      ++++ G +GK    +     V A H   ++ +   
Sbjct: 236 NKTAVFNSDDPSSAIIMPRVK---TKIMTYG-KGKDNDVYPLTFHVAASH--MELNLQTP 289

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + D    + GEF VYN + +    IA G+    ++  L+    VPGRF+ +    +  
Sbjct: 290 VGEMDLKLHITGEFNVYNVMGSICAAIAEGLTREDIIRGLDDFAGVPGRFQLIHA-GQPF 348

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE +LK  R IT G++ VVFG GGDRD+ KRPIMGKIALDLADIA+VT
Sbjct: 349 TVVVDYAHTPDGLENVLKTARQITKGKLWVVFGAGGDRDRKKRPIMGKIALDLADIAVVT 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            DNPRSEDPE I  +I  G+    E        +R EAI   +      DV+++AGKGHE
Sbjct: 409 SDNPRSEDPEAIIRDIEEGLKDNPEGKEIHKITDRREAIEYVMAHAKPDDVVMIAGKGHE 468

Query: 471 TVHIVTN 477
              I+ +
Sbjct: 469 NYQILKD 475


>gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
 gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
          Length = 491

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 160/486 (32%), Positives = 233/486 (47%), Gaps = 46/486 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR +    IF  I G   DGH ++  AI  GA  +V S      +      +
Sbjct: 14  EIENLMVDSRDVLPNSIFFCIKGMIHDGHRYVNAAIKNGAVCVVHSEDIKRNN------A 67

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           N   + V +    L+  A+  YG +P     +  VTGT+GKSS+A  ++ +        +
Sbjct: 68  NVVYIKVRDVTAALNQVAACFYG-YPSKKMVVYGVTGTNGKSSIACMIRNLLN----PVY 122

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             G   TIS    D +L    TTP  + L + L  ++  G+   ++E SS GL+QHR D 
Sbjct: 123 ACGYIGTISIEYGDTKLPPLLTTPDIVPLQQILHDMAQAGMKACALEISSIGLEQHRTDS 182

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + +    FTNL  DH+DYH T + YF AK RLF++L P +  AI   DD +    M    
Sbjct: 183 VDVDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQLKP-DGTAITNKDDPHG---MAIVA 238

Query: 262 NAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +   RV++ G      Y+ K I L       +K   T+  +G ++     L   F +YN 
Sbjct: 239 DCPARVVTYGVLEKADYEAKDIQLNA-----DKTIFTLVHDGSEYPVQTNLVAMFNLYNL 293

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L         G+    +LE L  +  + GR E +    +   I VD+AHT + LE I K 
Sbjct: 294 LAVIAALHEGGLPIEQILEQLNTIPQIEGRMERI-EEGQPFNIIVDFAHTPDGLEQIFKF 352

Query: 376 IRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
              IT    RII VFG  G RD  KRP+ G++A    D+ I+T+D+PR EDP +I  EI 
Sbjct: 353 ASAITPKEKRIISVFGSAGKRDTKKRPVFGQLADKYCDLIILTEDDPRDEDPIQIAEEIA 412

Query: 434 HGIPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G    I+K NRI      +AIR A+E+ N  D +++ GKG ET      G +    D  
Sbjct: 413 AG----IQKTNRIIIESRYDAIRQAVEVANVGDTILILGKGDETFIYREFGREPWMSDPA 468

Query: 488 IIREIL 493
            +R+ L
Sbjct: 469 AVRDAL 474


>gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
 gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
          Length = 479

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 152/467 (32%), Positives = 234/467 (50%), Gaps = 41/467 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR ++ G  F A+ G++E G  +  +A+ +GA  +V  S+       A +R+  P 
Sbjct: 9   LSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGALIVVYDSS------GAGVRAPEPG 62

Query: 93  L----VVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           L     V +  + L   A+R +G HP    +++AVTGT+GK+S   F+ +  Q       
Sbjct: 63  LGFAVPVRDLGRHLGSIAARFFG-HPSETLDVIAVTGTNGKTSCTHFIAEALQPDH---- 117

Query: 146 QIGPTSTISSFAQD-----NRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              PT+ I +          R+  TTP  I +   L+ L +QG    ++EASSHG  Q R
Sbjct: 118 ---PTAVIGTLGWGLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQAQGR 174

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++G+      +T + RDH++YH T ++Y  AK+ L     P      +  DD  S + + 
Sbjct: 175 INGVHCRGALYTRITRDHLNYHGTFESYLAAKLGLLAN--PALEFVAVTLDDP-SVDAIL 231

Query: 259 RAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQV 312
           R+  AG +V+     G     F  L+       ++ + + V+  G+  +   P+ G+F  
Sbjct: 232 RSVPAGVKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYGDFNA 291

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L    + + +G  +      + ++  VPGR E    N  G  + VDYAHT ++L  +
Sbjct: 292 ENLLGTLAVLVGLGYPAEAAASRVGRVRPVPGRMERFREN--GLTVIVDYAHTPDALRNV 349

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L ++R     R+ VVFGCGGDRD+GKRP MG IA  +AD  IVTDDNPRSE  + I  +I
Sbjct: 350 LTSLRRHCRERLWVVFGCGGDRDRGKRPEMGAIAARIADHVIVTDDNPRSEPGDAIVQDI 409

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + G          +R  AIR AI      D+++VAGKGHE    V  
Sbjct: 410 LAGCGETAVTVVRDRRTAIRAAIAQAGDGDIVLVAGKGHEAFQEVAG 456


>gi|257068259|ref|YP_003154514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
 gi|256559077|gb|ACU84924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
          Length = 525

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 238/471 (50%), Gaps = 58/471 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE----AIVVSSAYSLQDFSATIR- 87
           VS DSR ++ G ++ A+           P A A GAE    A    +A +L D +   R 
Sbjct: 43  VSLDSRSVEPGDLWCAL-----------PGATAHGAEFAAQAAGRGAAMALTDPAGRERC 91

Query: 88  --SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
             +  P LVVD+ R   +L A+ ++G+  E +  + VTGT+GK+SV + + +     G+ 
Sbjct: 92  EAAGLPALVVDDPRSATALAAALVHGRPAERLATIGVTGTNGKTSVTTAITRALLELGVP 151

Query: 144 SFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +  IG TS  S  A D          TTP    L   L+ ++  GV  VS+E SSH L  
Sbjct: 152 AGAIG-TSGTSYRAADGSDHAIATVRTTPEAPELHGLLARMAEDGVEVVSMEVSSHALVL 210

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR D +      FTNL +DH+D+H T +AY+ AK  LF     +    ++  DD + + +
Sbjct: 211 HRADEVVYDVVCFTNLTQDHLDFHGTMEAYYEAKRTLFTPAHARRG--VVCVDDDWGRRL 268

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-------VTISVEGKDFDFLF--PLP 307
            + A     ++    Y  +      + A H  ++         + V+G D        LP
Sbjct: 269 AREA-----QIPVTTYATR----PGIDADHRAREHRADGYGSIVEVDGPDGTRTLHAALP 319

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTS 366
           G   V N L A  L  AIG     V++ L +   VPGR E V  T  RG    VDY+HT 
Sbjct: 320 GRHYVANTLAADLLLAAIGRTGEDVVQALGEAGTVPGRMEPVAHTPIRG---VVDYSHTP 376

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++LE  L  +R +  +GR++VV G GGDRD+ KRP+MG++A   AD+ +VTDDNPR+EDP
Sbjct: 377 DALEQALLTLRAVPGTGRLLVVMGAGGDRDRAKRPLMGEVAARYADVVLVTDDNPRTEDP 436

Query: 426 EKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             IRAE++ GIP   +        R EAI  A  + +  D ++VAGKG ET
Sbjct: 437 AAIRAEVLSGIPEGTKAQVHDVDGRGEAIALAAYLADVSDTILVAGKGAET 487


>gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 490

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 162/493 (32%), Positives = 241/493 (48%), Gaps = 43/493 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+ KD+P  +   SI        +I  V   ++ +Q G IF+   G K  G  F+
Sbjct: 1   MQLAELL-KDWPCSVTGGSI------RTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+A+GA AIV   + SL      I    P + V NT  FLS  +++L     E   ++
Sbjct: 54  KEALARGAAAIVSEESISL----PIIDKEIPFVWVPNTALFLSYASAKLAAFPAEALTVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           A+TGT+GK++V+ FV Q+           G   F I      +++ Q   LTT     L 
Sbjct: 110 AITGTNGKTTVSHFVSQLLNALHKHAAVIGTVGFFINGEKQQTAYEQ---LTTLQAKELH 166

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L     +GVTHV +EASS GL QHRLD   +  G F NL  DH++ H   +AY  AK 
Sbjct: 167 PILKQCVQKGVTHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKK 226

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290
           RL +  L K+   ++  DD + + V        C   S G+     +H++ V     K  
Sbjct: 227 RLAD--LSKK--LVLNGDDNFCRSVGIYDKKKSC---SFGFDNHNDLHIQIVSESVGKTV 279

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +     +     P  G++ V NA+ +      +G+    ++ H+  L +  GR E + 
Sbjct: 280 LCLQTSASEHIVEIPFVGKYHVQNAVASLMAVWRLGVPMEDIVGHMWSLRLPEGRLEKI- 338

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N  G  +YVDYAHT+ +L+ +L+      S  I +VF CGG+RD+ KR  MG +A   A
Sbjct: 339 ENPLGIDVYVDYAHTAEALQAVLQTFD--HSKTIYLVFSCGGNRDKAKRFAMGAVASKYA 396

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV 464
           D+  +T DNPR EDP  I   I   I GF E+       +R  AI  A+    K D+++V
Sbjct: 397 DVIYLTTDNPRDEDPIVINESI---IAGFTEQQYYEIYLDRKLAIHQALAKAEKGDIVLV 453

Query: 465 AGKGHETVHIVTN 477
           AGKGHE    + N
Sbjct: 454 AGKGHEQTQQIKN 466


>gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 495

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 156/454 (34%), Positives = 218/454 (48%), Gaps = 17/454 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  ++ +  DSR ++ G  FVAI G    G  F  QA   GA AI+       +  +  
Sbjct: 18  RDIAVSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAEYPAPA 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                P L     R  L   A   +G   H   ++ VTGT+GK+S    + Q     GL 
Sbjct: 78  DAIAVPGL-----RSRLGAMADLFHGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGLR 132

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG     +    +    TTP  + +   L  L   G   V++E SSH LDQ R+DG+
Sbjct: 133 GGSIGTLGAGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGRVDGV 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL RDH+DYH    +Y  AK RLF  L      A++  DD + + +  R   
Sbjct: 193 HYDVAVFTNLTRDHLDYHGDMASYGEAKARLF--LREGLRSAVLNLDDEFGRVLAGRLAE 250

Query: 263 AGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            G R++ V   G +G  +  + +          +S   +      PL G F V N L   
Sbjct: 251 -GVRLVGVSSRGQEGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLLAVG 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+  A+G   A V   L +L  V GR   +G +     + VDYAHT ++LE  L ++R  
Sbjct: 310 GVLHALGDSVACVAAILSRLQPVAGRMNRLGGDGERPLVVVDYAHTPDALEQALASLRAH 369

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
              R+  VFGCGG+RD+GKRP+M +IA   AD  +VTDDNPR ED + I A I+ G   P
Sbjct: 370 AGARLTCVFGCGGERDRGKRPMMARIAEQHADRVVVTDDNPRGEDGDAIVAGIMAGFAAP 429

Query: 438 GFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             ++ + +R  AI  AI     QDV++VAGKGHE
Sbjct: 430 EAVQVERDRALAIARAIARSGAQDVVLVAGKGHE 463


>gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
 gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
          Length = 520

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 157/512 (30%), Positives = 250/512 (48%), Gaps = 52/512 (10%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+++LS+        KI  +++DSR ++ G  F+A  G + D    IPQAIA G  A++ 
Sbjct: 17  LLDRLSV--------KIQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVI- 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVA 130
              +  Q FS       P L +   R      AS++Y  HP     ++ +TGT+GK++ +
Sbjct: 68  ---WEKQGFSWKPEWKIPNLGISGLRHEAGKIASQVY-DHPSRHLRLVGITGTNGKTTCS 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  Q     G  +  IG        A ++   TTP  +YL + ++     G   + +EA
Sbjct: 124 HWYAQTMMTLGEKTAIIGTLGHGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEA 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL Q RL G +      TNL RDH+DYH +  AY  AK +LF         A++  D
Sbjct: 184 SSHGLSQDRLAGSEFSIAVLTNLTRDHLDYHGSMDAYAAAKAKLF--FWEGLQHAVLNLD 241

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHN----KQQVTISVE--GK 298
           +    E+ ++       ++  G++      +    +K+    N     Q ++  VE   +
Sbjct: 242 EVLGVELSQQLAWKDVSIIGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNR 301

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR- 357
                  + G +  YN L      +A  +D    +  L+++  +PGR E +G    GG  
Sbjct: 302 RASLQCNVTGRYNAYNLLAVLATLLASNVDLDDAITALQQVQPIPGRMEKLG----GGDQ 357

Query: 358 --IYVDYAHTSNSLEMILKNIRTITSG------------RIIVVFGCGGDRDQGKRPIMG 403
             + VDYAHT ++L  +L  +R   +G            +++ V GCGGDRD+GKRP++G
Sbjct: 358 PIVIVDYAHTPDALNEVLTGLRETLAGTRMKKRIRKNQAKLVCVIGCGGDRDRGKRPLIG 417

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDV 461
           +IA  LAD  I+T DNPR+E+P  I  EI+ G  G     + +R  AI  AI    K D+
Sbjct: 418 EIASHLADEVIITSDNPRNENPADIINEIMLGASGKHCTAEADRTAAIYRAIHGARKGDI 477

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKG ET H    G+K    D +++R++L
Sbjct: 478 VLIAGKGAET-HQEIQGKKYPFDDREVVRQVL 508


>gi|296129438|ref|YP_003636688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
 gi|296021253|gb|ADG74489.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
          Length = 520

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 224/465 (48%), Gaps = 43/465 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+  S  ++ G +FVA+ G K  G  F   A+A+GA A++        D  A +  + P+
Sbjct: 42  VTMSSTDVEPGDLFVAVPGLKVHGARFAADAVARGAVAVLTD-----DDGVAAVPPDVPV 96

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT 150
           LV  + R      AS   G     ++ V  T       +  FV    +     +  +G  
Sbjct: 97  LVAHDPRSLAGPVASWALGNPASRLVTVGVTGTNGKTTTTYFVDAALRAHHARTAVLGTV 156

Query: 151 S-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              I   A ++  TT     L   L+    +G   ++ E SSH L   R+ G +     F
Sbjct: 157 ELRIGDDAVESPRTTVEAPVLQALLAVAHERGAGALTTEVSSHALALGRVLGTRFDVVGF 216

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+D+H   + YF  K RLF    P+++   ++  DDA+ + + + A        
Sbjct: 217 TNLQRDHLDFHGDMEGYFRDKARLFA---PEQARRGVVVVDDAWGRRLAEEA-------- 265

Query: 269 SVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLF------------PLPGEFQVY 313
           ++  +    H+   +   A     +  + ++G    F+             PLPG   V 
Sbjct: 266 AIPVETVSTHVGAPEAAGATWAVVEADVGLDGVGSRFVLRGPDGARHVAHSPLPGLVNVS 325

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI 372
           NA +A  L  A G+  A  +E +   H +PGR E V     G  +  VDYAHT ++L + 
Sbjct: 326 NAALAIVLAHAAGVPLATAIEAVGGAHAIPGRMERVVERGDGWPLCLVDYAHTPDALVLA 385

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R IT GR+++VFG  GDRD+GKRPIMG+IA  LAD+ +VTD+NPRSEDP  +RA I
Sbjct: 386 LEAVRPITPGRLVIVFGSDGDRDRGKRPIMGEIAARLADVLVVTDENPRSEDPASVRAAI 445

Query: 433 IHGI----PGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           + G+    P      E  +R +AIR A+ +    D ++V GKGHE
Sbjct: 446 LAGVRDVRPDLADVHEATSRAQAIRDALRLAGPDDTVIVTGKGHE 490


>gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
 gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
          Length = 533

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 169/510 (33%), Positives = 250/510 (49%), Gaps = 76/510 (14%)

Query: 25  WRER---KINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI------- 71
           W++     + EVS    DSR I+ G +FVA  G+  DG  +I QA+  GA  +       
Sbjct: 24  WKDNPQAAMTEVSGIQLDSRQIKPGQLFVAYPGHATDGRQYIKQAVDGGATVVLFEQNDS 83

Query: 72  -------------VVSSAYSLQDFSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPE 115
                        V +SA +L   +     N     ++ V N    +S  A+R YG +P 
Sbjct: 84  ETILETLLNDNQQVAASAQTLSGVAPLGLYNYKEAVLIPVKNLSSQVSHIAARFYG-NPT 142

Query: 116 N---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-------RLTTP 165
           N   ++ VTGT+GK+S A  + Q  +      F   PT  +S+    N         TTP
Sbjct: 143 NKMSVVGVTGTNGKTSCAYLMAQALE------FLQYPTLMLSTIGNGNPSKLQATENTTP 196

Query: 166 SPIYLAK-ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
             I + + A  YL+ +   H+++E SSHGL Q R+  ++     FTNL +DH+DYH   +
Sbjct: 197 DAIAIQRLAAEYLARKNY-HMTMEVSSHGLVQSRVAAVQYKIAVFTNLSQDHLDYHSDME 255

Query: 225 AYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           +YF AK +LF  EEL      A+I ADD Y + ++       CR ++   + K   L   
Sbjct: 256 SYFQAKRQLFIREEL----EAAVINADDEYGRRLLTD-DAVACRKIAFSCEQKNEDLNIE 310

Query: 283 CAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL-VAAGLCIAIG-IDSAL 331
             I  K  +T ++ G   +   P         L G F + N L VAA L    G ID  +
Sbjct: 311 NWIVAKN-LTFNMRGIQAELHTPWGASKLRSGLLGHFNLSNLLAVAASLGEMFGDIDKWI 369

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           V   L     VPGR +    +S+   + VDYAHT ++L+  L ++R   +G +  +FGCG
Sbjct: 370 VA--LNAAKAVPGRMQNFTASSKA-TVVVDYAHTPDALDKTLTSLREHCAGELWCIFGCG 426

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIE 447
           GDRD  KRP+MG +A   A+  I+TDDNPR+E  E+I + I  G+      +I+K  R E
Sbjct: 427 GDRDNTKRPLMGAVAEQKANRVIITDDNPRTESSEEIVSMIRSGMKDQSTQYIQK--RKE 484

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           AI  A++     D+++VAGKGHE    + N
Sbjct: 485 AIEFALKHSTPNDIILVAGKGHEDYQQIGN 514


>gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 525

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 233/476 (48%), Gaps = 37/476 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS---LQ 80
           + R   +  V+SDSR  + G +F A  G K  G  F   A+  GA A++  +       +
Sbjct: 33  EARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFAASAVEAGANAVLTDAQGRDILRR 92

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
           D       + P+LVVD+ R  +   A+ + G+   ++   AVTGT+GK++ A  V+ I  
Sbjct: 93  DLGG---RSVPVLVVDDPRAAVGKAAALILGEPAADLDSYAVTGTNGKTTTAYMVESILG 149

Query: 139 RSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G     IG     ++  +    LTTP P  L   L++    G T V +E SSH L Q 
Sbjct: 150 ALGRKPGLIGTVEIRLAGMSVPAHLTTPMPDELQSYLAFHRRGGGTDVVMETSSHALVQG 209

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK--- 254
           R D ++     FTNL +DH+D+H T + Y+ AK  LF     +   A++  D  Y +   
Sbjct: 210 RSDPVRFTVAGFTNLTQDHLDFHGTMERYYQAKASLFTPERARN--AVVSVDGEYGRRLL 267

Query: 255 ---------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                    EV   A ++G   L  G  G      K  A+     V  S +G+       
Sbjct: 268 AECAPRLEGEVAALAVDSGLPDLPDGVVGW-----KALAMEGSSFVLESTDGRRLATSTS 322

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYA 363
           LPG+F V NA +AA + +  G     +   L       VPGR E +  N+R  R+ VD+A
Sbjct: 323 LPGDFNVANAALAAVMVMTAGYSPDELARALPAGINPAVPGRMEVL--NARP-RVIVDFA 379

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H + +L   +K +R  T GR++V+ G  GDRD+GKRP MG       D   +TDD+P +E
Sbjct: 380 HNTEALVNAMKALRPSTEGRLVVLTGSAGDRDKGKRPAMGAAVARYGDFVYITDDDPHNE 439

Query: 424 DPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DP  IRA +I G  GF    +E  +R +AI  AI   +++D +++AG+GHET+  V
Sbjct: 440 DPAVIRAAVIEGTRGFDTPVVEIADRSQAIDAAIAEASERDTILLAGRGHETIQEV 495


>gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 513

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 152/483 (31%), Positives = 236/483 (48%), Gaps = 52/483 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +V  DSR  + G +FVA+ G   DGH F+  A A+GA A +V S      +   + + 
Sbjct: 26  VTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADARARGAVAALVES------WEPDLANY 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V NTR  L L A+  +G+  E   I+ +TGT GK++ +  V  + + +G  +  I
Sbjct: 80  PAYAAVPNTRAALPLVAATFFGRPAEALGIIGITGTDGKTTTSYLVDAMLRSAGYRTGLI 139

Query: 148 GPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           G  +          D R TTP  + + + L+ +    V    +EA+SHGL  HRLD    
Sbjct: 140 GTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMREARVDWAVLEATSHGLALHRLDECAF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPA--IIYADDAYSKEVMKR 259
             G  TN+  +H+++H T + Y  AK RL E +    P+  P   ++  DD  ++ + + 
Sbjct: 200 DVGVVTNITHEHLEFHGTIEEYRRAKARLLERVAGRGPRPYPGGVVLNRDDEGARAIAEA 259

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEF 310
           A  A   VL    +G    L+          V ++ +G  F    P         L G +
Sbjct: 260 AGTA--PVLWFSAKGAPADLQA-------DDVQLAADGTSFRLTTPRGSVPVRLNLIGAY 310

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSN 367
            V NAL AAG+   +G+    +   LE L  VPGR   V      G+ Y   VDYAHT +
Sbjct: 311 NVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGRMRRVDL----GQPYTVIVDYAHTPD 366

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           SLE  L+ +R++  GR+I VFG  G+RD+ KRP+ G ++  LAD ++ T ++PR EDP+ 
Sbjct: 367 SLEKSLRLLRSLVPGRVIAVFGSAGERDRAKRPLQGAVSARLADFSVFTSEDPRFEDPDA 426

Query: 428 IR---------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           I          A  + G   ++   +R  AIR A++     D +++AGKGHE   I+   
Sbjct: 427 IIAEIAAGARDAGAVEGR-DYVCIEDRRAAIRAALDWARPGDGVLLAGKGHERC-IIYGA 484

Query: 479 EKK 481
           E++
Sbjct: 485 ERR 487


>gi|213024666|ref|ZP_03339113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 461

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 230/443 (51%), Gaps = 27/443 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   + 
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253

Query: 265 CRVLSVGYQGKF---IH---LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNAL 316
              ++V  +G      H   LK     ++ + VTI       + +    L G F V N L
Sbjct: 254 PDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLL 313

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A    +A+G     +L+   +L  V GR E V T      + VDYAHT ++LE  L+  
Sbjct: 314 LALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAA 372

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I   +
Sbjct: 373 RLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---L 429

Query: 437 PGFIEKGN------RIEAIRTAI 453
            G ++ G       R EA+  AI
Sbjct: 430 AGMLDAGQVRVMEGRAEAVTNAI 452


>gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
 gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
          Length = 532

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 233/463 (50%), Gaps = 33/463 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRS 88
           +  +S DS+ I+ G +++A  G    G  F P A+A GA A+V  +A  ++ D  A    
Sbjct: 41  VTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAAMLDGLAV--- 97

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSF 145
             P+LV ++ R      ++ +YG+ P   LA   VTGT+GK++ +  +    +R+GL + 
Sbjct: 98  --PVLVAEDVRGLAGRLSAFVYGE-PATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKTG 154

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG   T+     D  +    TTP    L   L+    + V  +++E SSH L   R  G
Sbjct: 155 VIG---TVQILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGRTAG 211

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I+  A +F NL +DH+D+H   + YF AK +LF     +   A++  DD + + V++R  
Sbjct: 212 IRFKAAAFLNLTQDHLDFHADFEDYFEAKAKLFTPGYTER--AVVDVDDEHGRRVVERCR 269

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVA 318
             G +V +   +G          + +    T +V G D         LPG+F V NAL A
Sbjct: 270 ANGVQVHTFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASAGLPGDFNVANALAA 329

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L    GID    +  +  +H VPGR E +    +     VDYAHT +++   L  +R 
Sbjct: 330 IVLLAVTGIDLETAIAGVADVHGVPGRMERIQVPGQQFLAVVDYAHTPDAVLTALSALRP 389

Query: 379 ITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +     GR+ VV GCGGDRD+ KRP+MG  A+ LAD A+ TDDNPR+E    I A +  G
Sbjct: 390 VAERGRGRLRVVVGCGGDRDKTKRPLMGAAAVRLADEAVFTDDNPRTESSADILAAVTAG 449

Query: 436 IPGFI---EK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               +   EK      +R EAIR A+      DVL+VAGKGHE
Sbjct: 450 ADAELAGAEKNYRVVADRAEAIRRAVAASGPGDVLIVAGKGHE 492


>gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 487

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 158/496 (31%), Positives = 254/496 (51%), Gaps = 34/496 (6%)

Query: 14  LINQLSIFPMQWRERKINEV----SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           L   + +   Q  ER +  V    ++DSR ++ G +FVAI G   DGH +  QA AQGA 
Sbjct: 3   LAELIEVIQTQKTERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYAKQAEAQGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           AIV     S +    TI    P+++V +T + ++  A + Y    E +  + +TGT+GK+
Sbjct: 63  AIV-----SERLLDVTI----PVILVRSTTRAMAELAGKFYDYPSEKMRMIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  + V+ +  + G  +  IG     I      +R TTP    L      +  +GV  V 
Sbjct: 114 TTTTIVRDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQMHQEGVEDVI 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP 243
           +E SSHGL+  R+ G       FTNL  DH+D+H+T + Y  AK  LF +L   L  +  
Sbjct: 174 MEVSSHGLELGRVTGTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQLGQRLSDKKV 233

Query: 244 AIIYADDAYSK--EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           A++ ADD  S   E+M      G RVL+ G  Q   +  K +     +   T+  + +  
Sbjct: 234 AVLNADDEISHLFEMM-----TGARVLTYGIEQPADLQAKNITQTLQETTFTMVYQEQAV 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +      G F VYN L+A G+ ++IG     +   + ++    GR + +  +  G  IYV
Sbjct: 289 ELTVQFIGRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQRLPID--GYNIYV 346

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + +E  LK +  +    II + G GG+RD  KRP+MG++A   A   ++T D+P
Sbjct: 347 DYAHTPDGIEQCLKALVDVPKENIIFLIGTGGNRDVTKRPMMGQLASTYAGTVVITTDDP 406

Query: 421 RSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           R E  E I + I  G+    F+E G+R EA+R A  +    +++++AGKGHE   I+  G
Sbjct: 407 RFESYESITSGIASGMLHDQFVEIGDREEAVRYAASLARPDNIVILAGKGHEKYQII--G 464

Query: 479 EKKMSVDCD-IIREIL 493
           ++K  +D + +++E++
Sbjct: 465 DEKTPLDEEALVKEMI 480


>gi|312140147|ref|YP_004007483.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-dia minopimelate
           ligase mure [Rhodococcus equi 103S]
 gi|311889486|emb|CBH48803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Rhodococcus equi 103S]
          Length = 547

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 232/467 (49%), Gaps = 29/467 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V   ++ ++ G +F A+ G    G  F+  AIA GA A++   A      + T  S
Sbjct: 51  EVTGVELRAQAVRRGDLFAALPGAHTHGAEFVGVAIAAGASAVLTDDAGVAMLAAGTEES 110

Query: 89  --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+LV  + R+ L   ++ +YG HP   + + G +G S   +    +      +   
Sbjct: 111 AASLPVLVHPDPRQVLGEASATIYG-HPSEHMQIIGITGTSGKTTTSYLVEAGLAAAGHT 169

Query: 147 IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           IG   TI +    +R    LTTP    L    + +  +G+  V +E SSH L   R+DG+
Sbjct: 170 IGLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRERGIDTVVMEVSSHALALGRVDGV 229

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYS---KEVMK 258
           +   G+FTNL +DH+D+H+    YFNAK RLF  +       A+I  DD +     E+ +
Sbjct: 230 RFSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAVCAQRAVICTDDRWGVRMAEIAR 289

Query: 259 RAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYN 314
            AH A       +S      +       +    Q  T++  +G        LPG + V N
Sbjct: 290 HAHPADADAVETVSTHPPADWTATATSSSDTGNQVFTLTGPDGTPRTATLRLPGHYNVAN 349

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMI 372
           A +AA +C + G D    L  +  + V PGR E V    RG      VDYAH   +LE +
Sbjct: 350 AALAAAICCSAGADVDAALAGIANVDV-PGRVERV---ERGQDFLAVVDYAHKPAALEAV 405

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +R  T GRI VV G GGDRD+GKRP+MG+     AD+ +VTDDNPR+EDP  IRA++
Sbjct: 406 IATLRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQM 465

Query: 433 IHG---IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G   +P        E G+R EAI  A+      DV++VAGKGHE+
Sbjct: 466 LAGAVAVPDAERGAVREIGDRAEAIAAAVRWARTGDVVLVAGKGHES 512


>gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phymatum STM815]
 gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum
           STM815]
          Length = 512

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 227/472 (48%), Gaps = 29/472 (6%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR I  G +F+A   +  D   FI  AI +GA A++V +     D    +    P L 
Sbjct: 33  ADSRKIAPGDVFLAYAVDGADNRPFIASAIERGAAAVLVQADGFAGDIDPALMVAVPRL- 91

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TS 151
                +     AS  YG   +   ++ VTGT+GK+S  +++       G     IG   S
Sbjct: 92  ----NELTGTIASAWYGDPSDAMRVIGVTGTNGKTSCTNWISAALTALGQPCAIIGTLGS 147

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +         TTP    L ++L  L + G   V++E SSH L Q R++G     G FTN
Sbjct: 148 GMPGQLVHTGFTTPDAPQLQRSLEQLRAAGAKAVAMEVSSHALHQGRVNGTAFSVGVFTN 207

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH T  AY  AK RLF    P+   A+I ADD   + ++  + N   + ++  
Sbjct: 208 LTQDHLDYHGTFAAYEAAKARLFS--WPELKAAVINADDEAGRRMIA-STNGHAKTIAYS 264

Query: 272 YQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            Q +        I    V A        I+ +  + D      G F V N L   G  +A
Sbjct: 265 LQPRADVQADASIVASNVRATTTGTAFHIASDWGNSDIEVNTLGAFNVSNLLGVLGALLA 324

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTIT-- 380
             +     +  + KL  V GR E +G   +     + +DYAHT ++LE  L  +R I   
Sbjct: 325 SDVPFDAAVAQIAKLESVNGRMERLGGRVQNDEPLVVIDYAHTPDALEQTLTALRPIADA 384

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G++I +FGCGGDRD  KRP+MG+IA   AD  +VT DNPRSEDP KI  +I  G+   
Sbjct: 385 RGGKLICMFGCGGDRDATKRPLMGEIAERCADGVVVTSDNPRSEDPHKIIDQIAAGMKD- 443

Query: 440 IEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             K  RIE    AI  A+    ++DV+V+AGKGHE+   +  G+K+   D D
Sbjct: 444 ASKARRIEDRASAILQAVRCAAREDVVVLAGKGHESTQEIM-GKKRAFSDQD 494


>gi|227548908|ref|ZP_03978957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079036|gb|EEI16999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 545

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 232/468 (49%), Gaps = 27/468 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W    I+ V  ++R +  G +F A+ G +  G  F  ++ A+     +++    L D   
Sbjct: 38  WAGVAISSVGLNAREVAPGGLFAALPGTRVHGAQFAAESPARA----ILTDREGL-DIVE 92

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSG 141
                 P+LVVD+ R  L   ++ +YG HP     ++ VTGTSGK++    +++    +G
Sbjct: 93  AAGDRRPVLVVDDVRAVLGEVSAHVYG-HPSRRMTLIGVTGTSGKTTTTYLLERGLIAAG 151

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                IG T T I        LTTP    L    + ++++GVTHV +E SSH L   R+D
Sbjct: 152 AQVGLIGTTGTRIRGRDVPTSLTTPEAPTLQALFARMAAEGVTHVVMEVSSHALSLGRVD 211

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKR 259
           G    A  FTNL +DH+D+H T   YF AK   F+   P   S +++  DD + + + + 
Sbjct: 212 GTSFDAAGFTNLSQDHLDFHPTMDDYFQAKAAFFDPSSPVAASASVVCVDDEWGERMAEL 271

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A +   RV + G +G     +      N  Q + + ++G+  +F  PLPG F V NA +A
Sbjct: 272 ASHP-LRVGTHGQEGLDCSARLTAVRDNGAQDIELRIDGQTHEFTLPLPGAFNVANAALA 330

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKN 375
             L   +G D    +  LE    VPGR E +      G+ +V   DYAH   ++  +L+ 
Sbjct: 331 TALARVVGADMPQFVRGLENA-AVPGRMERIDA----GQDFVAVVDYAHKPAAIAAVLET 385

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R    GRI +  G GGDRD  KR +MG+ A   AD+ IVTDDNPR+EDP  IRA ++ G
Sbjct: 386 LREQVDGRIGIAVGAGGDRDTTKRAVMGQQAATRADLVIVTDDNPRTEDPAAIRAAVLRG 445

Query: 436 I------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                      E G R EAI   +      D +VV GKGHE   IV +
Sbjct: 446 AREAGSGAEIRECGPRAEAIDQLVAWALPGDAIVVVGKGHEVGQIVGD 493


>gi|291003734|ref|ZP_06561707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 486

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 224/448 (50%), Gaps = 25/448 (5%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----YSLQDFSATIRSNTPILVV 95
           ++ G +F A+ G +  G  F   A+  GA A++   A      L D          +LV 
Sbjct: 1   MRPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVH 60

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
           D+ R  L   A+++YG+  +   IL VTGTSGK++    ++     +G ++  +G   T 
Sbjct: 61  DDPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETR 120

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           I+    D+  TTP    L   L+ +   GVTHV +E SSH L   R+ G +   G FTNL
Sbjct: 121 IAGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNL 180

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            +DH+D+H+    YF AK  LF+     E   ++  D  + ++++K     G   +S   
Sbjct: 181 SQDHLDFHRDLDDYFQAKALLFDGRSEHE---VVCTDTDWGRKLVK----PGTITVSTTG 233

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +           +Q+ T    G         LPG F + NAL+A G+  A  + +  
Sbjct: 234 DASWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWA 293

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L ++ V PGR E V        + VDY+H   ++  +L   R    GR+IVV GCG
Sbjct: 294 IERGLAEVDV-PGRMERVALGQDFTAV-VDYSHKPGAVSAVLDAARAQAEGRVIVVLGCG 351

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG-----FIEKG 443
           GDRD  KRP+MG+ A   + + IVTDDNPRSEDP  IRA ++ G   +P       IE+G
Sbjct: 352 GDRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERG 411

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +R EAI  A+   +  D++VVAGKGHET
Sbjct: 412 DRREAIAEAVARASSGDIVVVAGKGHET 439


>gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella pealeana ATCC 700345]
 gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC
           700345]
          Length = 488

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 234/463 (50%), Gaps = 17/463 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           E++ DSR +QAG++FVAI G + DG  FI  A  +GA A +V +    +  +        
Sbjct: 21  EITLDSRAVQAGYLFVAIPGYQVDGRKFIAAAFERGASAALVHTDSPEKHGTVVNDGGLQ 80

Query: 92  ILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           IL     R+ +S  A++ Y   +    I+ VTGT+GK+SV   + Q+       +  +G 
Sbjct: 81  ILFFQLNRQ-ISALAAQAYPLSQSRPQIVGVTGTNGKTSVTQLIAQLQLLQSKQTAVMGT 139

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +     D+  TT  PI L K L  +  +G    ++E SSHGL Q R++ +      
Sbjct: 140 LGNGLWGELVDSGNTTADPITLIKQLQGVEQRGADTCAMEVSSHGLVQGRVEAVPFDVAV 199

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+D+H T + Y  AK RLF+         +I  DD   +E +  A  A  ++L
Sbjct: 200 FTNLSRDHLDFHHTMEEYGIAKKRLFQ--FANLRGGLINIDDVVGREWL--ADLASDKLL 255

Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
               +G     I+ K           T+     +     PL G+F + N + A G    +
Sbjct: 256 GFSVKGDSTADIYTKDNHFHDGGVSCTLVWPTGEAQLNSPLLGDFNLSNLVAALGALYLL 315

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G D   ++    KL  V GR E   T+  G  + VDYAHT +++E  LK +R    G++ 
Sbjct: 316 GEDMHTLVALAPKLEPVAGRMERF-TSKDGVTLVVDYAHTPDAIEQALKALRVHCKGQLW 374

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            +FGCGGDRD+GKRP+M   A   AD  +VT DN RSEDP  I ++I+ G+    +  ++
Sbjct: 375 CLFGCGGDRDKGKRPMMAASAEQFADRVMVTSDNCRSEDPNAIISDILAGLQHPQQALSQ 434

Query: 446 IE---AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +E   AI+  +      D++++AGKGHET   V NG KK++ D
Sbjct: 435 VERQVAIKEIVAQAASGDMVLLAGKGHETYQEV-NG-KKLNYD 475


>gi|300869516|ref|ZP_07114098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332489|emb|CBN59296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
          Length = 516

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/327 (37%), Positives = 180/327 (55%), Gaps = 7/327 (2%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TTP  + L K L+     G     +E SSH L Q R+ G       FTNL +DH+DYH+ 
Sbjct: 179 TTPFAVELQKQLAAAVEAGSKFGIMEVSSHALAQSRVLGCPFEVAVFTNLTQDHLDYHRD 238

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + YFNAK  LF     K   AI+ ADDAY + ++   ++      S       +    +
Sbjct: 239 MEDYFNAKALLFSSNYLKGR-AIVNADDAYGRRIIDSLNSEQVWSYSTNDSKADLWASDL 297

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               N  +  +     + DF  PL G++ + N L A G  + +G++ + ++ +L +   V
Sbjct: 298 KYEPNGVKGILHTPKGEADFYLPLVGQYNLSNLLAAVGAGLHLGLELSAIVLNLPEFPGV 357

Query: 343 PGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V  +  +   + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP 
Sbjct: 358 PGRVEKVQISPVQDISVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPK 417

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNK 458
           MGKI  +LAD+ +VT DNPR+EDPE+I  +++ GI   ++    G+R +AIRTAI     
Sbjct: 418 MGKIVAELADVTVVTSDNPRTEDPERILQDVLTGIAPEVKPLVIGDRAQAIRTAILEAKP 477

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD 485
            D +++AGKGHE   I+  G +K+  D
Sbjct: 478 GDGVLIAGKGHEDYQIL--GTEKIHFD 502


>gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
 gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
          Length = 501

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 234/473 (49%), Gaps = 46/473 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R R    + +DSR +  G  F+A  G   DG   +  A+A+GA A +V      +D    
Sbjct: 18  RARVTGTLQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMARGAVACLVEQ----EDVEPF 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
             +   I  +   +    L A++ +G+  E   +LAVTGT+GK+S A ++      +GLS
Sbjct: 74  GLAGEHIAALPGLKAATGLIAAQWFGRPSERLQVLAVTGTNGKTSTAWWLADAL--NGLS 131

Query: 144 --------------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                         +  IG    +SS      +TTP P+ L +A +  + +G+   ++EA
Sbjct: 132 KKELPALAGCALVGTLGIGVPPGLSS----TGMTTPDPVRLQRAFAQFAQEGLGACAIEA 187

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS GL + RL G ++    FTNL +DH+DYH    AY+ AK  LF+   P    A++  D
Sbjct: 188 SSIGLAEQRLAGTQISVALFTNLTQDHLDYHSDMAAYWQAKRVLFD--WPGLRAAVVNID 245

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLP 307
           DA+   +       G  + SV  QG    L+    +H    +  T++   +       L 
Sbjct: 246 DAHGARLHAELQGGGLDLWSVSIQGP-ARLQARDIVHRGAGLAFTVAESAQALPLQTRLI 304

Query: 308 GEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE---FVGTNSRGGRIYVDYA 363
           G + V N L V AG+  A+G+  A  L+   +L  VPGR E   F G       + VDYA
Sbjct: 305 GLYNVSNLLGVIAGM-RALGVPLAQALDACARLAPVPGRMEQLAFAGQP----LVAVDYA 359

Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           HT ++L   L  +R + +   GR+  VFGCGG+RD GKRP+MG +A   AD  IVT DNP
Sbjct: 360 HTPDALHQALAALRPMAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADRVIVTSDNP 419

Query: 421 RSEDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           R EDP  I  +I+ G I G   +   +R  AI  A+      DV+++AGKGHE
Sbjct: 420 RGEDPRAIIHQILLGTIAGTSVRAEEDRAAAICLAVAEAEAADVVLIAGKGHE 472


>gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 476

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 229/465 (49%), Gaps = 36/465 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V   ++ +Q G IF+   G K  G  F+ +A+A+GA AIV   + SL      I  
Sbjct: 9   EITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISL----PIIDK 64

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS------ 140
             P + V NT  FLS  +++L     E  +++A+TGT+GK++V+ FV Q+          
Sbjct: 65  EIPFVWVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKAAV 124

Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G   F +      +S+ Q   LTT     L   L     +GV+HV +EASS GL QHRL
Sbjct: 125 IGTIGFYLDGEKQQTSYEQ---LTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRL 181

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D   +  G F NL  DH++ H   +AY  AK RL +  L K+   ++  DD + + V   
Sbjct: 182 DHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLAD--LSKK--LVLNGDDNFCRSVGIY 237

Query: 260 AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                C   S G+     +H++ V     K  + +     +     P  G++ V N + A
Sbjct: 238 DKKKSC---SFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNTVAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 +GI    ++EH+  L +  GR E +  N  G  +YVDYAHT+ +L+ +L+    
Sbjct: 295 LMAVWRLGIPIDDIIEHMWSLKLPEGRLEKI-DNPVGIDVYVDYAHTAEALQAVLQTFD- 352

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
             S  I +VF CGG+RD+ KR  MG +A   AD+  +T DNPR EDP  I   I   I G
Sbjct: 353 -RSKTIYLVFSCGGNRDKAKRFAMGAVASKYADVIYLTTDNPRDEDPIIINESI---IAG 408

Query: 439 FIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           F E+       +R  AI  A+    K D+++VAGKGHE    + N
Sbjct: 409 FTEQQYYEIYLDRKVAIHQALAKAKKGDIVLVAGKGHEQTQQIKN 453


>gi|307731077|ref|YP_003908301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
 gi|307585612|gb|ADN59010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
          Length = 519

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 161/496 (32%), Positives = 237/496 (47%), Gaps = 43/496 (8%)

Query: 23  MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + W   ++     + +D+R + AG  F A      D   FI  A+ +GA A++V      
Sbjct: 18  LDWLRARVQPGAHLHADTRSLGAGDAFFAYAVEGADNRPFIDAALERGAAAVLVQP---- 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQIC 137
           + FS  + +++ +L V    +     AS  YG   +++L   VTGT+GK+S + ++    
Sbjct: 74  EGFSGALDASS-MLAVPRLNELAGSIASAWYGDPSDHMLTVGVTGTNGKTSCSQWISAAL 132

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     IG   T +         TTP    L ++L+ L   G   V++E SSH L Q
Sbjct: 133 TALGTRCAIIGTLGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQ 192

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R++G       FTNL +DH+DYH+T +AY  AK RLF    P+   A+I  DDA  + +
Sbjct: 193 GRVNGTAFDIAVFTNLTQDHLDYHRTFEAYEAAKARLFA--WPELRAAVINRDDAVGRRL 250

Query: 257 MK--RAHNAGCRVLSVGYQG-------------KFIHLKKVCAIHNKQQVTISV-EGKDF 300
           +   R H    R ++ G                 F+    V A        +S  +  + 
Sbjct: 251 LASTRGH---ARTIAYGLDAGQADPSQAAQQADAFLLAANVRATATGTAFHLSTSDWGEA 307

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--I 358
           D      G F V N L   G  +A  +     L  L KL  V GR + +G   +     +
Sbjct: 308 DVEVQTLGAFNVSNLLGVLGALLAANVPFDAALAELAKLESVNGRMQRLGGRLQNDEPLV 367

Query: 359 YVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +DYAHT ++LE  L+ +R + + R   +I +FGCGGDRD  KRP+MG IA  LAD  +V
Sbjct: 368 VIDYAHTPDALEKTLEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKLADGVVV 427

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPRSEDP+ I  +I  G+     K  RIE    AI  AI    ++DV+V+AGKGHE 
Sbjct: 428 TSDNPRSEDPQSIIGQIAAGMKD-ASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEA 486

Query: 472 VHIVTNGEKKMSVDCD 487
              +  G+K+   D D
Sbjct: 487 TQEIM-GKKRAFSDQD 501


>gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
 gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
          Length = 501

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 233/471 (49%), Gaps = 42/471 (8%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+R    + +DSR IQ G  F+A  G   DG   +  A+A+GA A +V     ++ F+  
Sbjct: 18  RQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVEC-EGVEPFA-- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI------ 136
             +   I  +   +    + AS  +G HP     +LAVTGT+GK+S A ++         
Sbjct: 75  -LAGDHIAALRGLKAATGMIASEWFG-HPTQRLQVLAVTGTNGKTSTAWWLADALNQLSK 132

Query: 137 --------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
                   C   G     + P        Q   +TTP P+ L +A +  +  G    ++E
Sbjct: 133 EELPALAGCALVGTLGMGVPPA------LQTTGMTTPDPVRLQRAFAQFAEAGHRACAIE 186

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASS GL +HRLDG ++    FTN  +DH+DYH    AY+ AK  LF+   P    A++  
Sbjct: 187 ASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFD--WPGLRAAVVNV 244

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFL-FPL 306
           DD     +      +   + S+  QG    L+    +H    + ++V EG   + L   +
Sbjct: 245 DDPQGAALHAELQGSDLDLWSISLQGP-ARLQAKHIVHTGAGLALTVAEGAHTEVLQTQV 303

Query: 307 PGEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G + V N L V AG+  A+G+  A  L+   +L  VPGR E +    +   + VDYAHT
Sbjct: 304 IGLYNVSNLLGVIAGM-RALGVPLAQALQACARLRPVPGRMEQLAAAGQ-PLVAVDYAHT 361

Query: 366 SNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++L   L  ++ + +   GR+  VFGCGG+RD GKRP+MG +A   AD  IVT DNPR 
Sbjct: 362 PDALHQALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRG 421

Query: 423 EDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           E+P+ I  +I+ G I G   +   +R  AI  A+      DV+++AGKGHE
Sbjct: 422 EEPQSIIHQILLGTIAGTSVRAEVDRAAAIAQALAEAGANDVVLIAGKGHE 472


>gi|86608711|ref|YP_477473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557253|gb|ABD02210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 510

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 239/476 (50%), Gaps = 31/476 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  + +DSR +Q G +F+ + G++ DG  F+ QA+A GA A ++S              
Sbjct: 30  QVWGLCADSRQVQPGDLFLGMPGSRVDGGSFVAQALAAGAVAALISQEAWESVSGEAGWG 89

Query: 89  NTPILVVDNT--RKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144
           + P+LV+      + ++  A+  YG     +  V  T       +   ++ + Q +G S+
Sbjct: 90  SQPVLVLPRASLNRAVAQVAAAFYGFPARQLTLVGVTGTNGKTTTTHLIEHLVQAAGRSA 149

Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   +    +++    TT  P  L ++L      G     +E SSH L Q R+ G  
Sbjct: 150 ALLGTLYNRWPGYSEVASHTTLFPPELQRSLREAQRAGAEVAVMEVSSHALAQDRVWGCS 209

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESPAIIYADDAYSKEVMKRAHN 262
             A  +TNL +DH+D+H + + Y+ AK  LF +E L  +  A+I ADDA  + +++    
Sbjct: 210 FAAAVWTNLTQDHLDFHGSMENYWQAKATLFRQEYL--QGRAVINADDAGGRRLLQ---- 263

Query: 263 AGCRVLSVGYQGKFIHLKKVCAI-----HNKQ------QVTISVEGKDFDFLFPLPGEFQ 311
                +    Q     L+ +  I      N Q      Q T+      F    PL G F 
Sbjct: 264 ----AIRPDLQPWAYSLQPLQGIPGLWPSNVQLHPSGLQATLHTPSGAFAVAAPLVGSFN 319

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G+ + +GI   ++   L     VPGR E V    +   + VDYAHT + LE 
Sbjct: 320 LANLLAAVGVALHLGIPVEIIQSALPHFPGVPGRMERVTLPGQDIAVIVDYAHTPDGLEN 379

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +LK +R+   G++I VFGCGGDRD+GKRP MG+IA   AD  IVT DNPR+EDP++I  +
Sbjct: 380 LLKALRSQVQGQLICVFGCGGDRDRGKRPQMGRIAATWADQVIVTSDNPRTEDPQQILRD 439

Query: 432 IIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I+ GIPG     + +R +AIR AI      D +V+AGKGHE   I+  G +K+  D
Sbjct: 440 ILAGIPGSPRAVEVDRRQAIRLAILAAQPGDTVVIAGKGHEDYQIL--GTEKIHFD 493


>gi|172040890|ref|YP_001800604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852194|emb|CAQ05170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 533

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/474 (31%), Positives = 239/474 (50%), Gaps = 48/474 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIR 87
           ++  +  S  +Q G +F A+ G++  G  F   A   GA A++  +  A  L D      
Sbjct: 39  VDSAAIGSADVQPGGLFCAVPGSRVHGATF---AADSGAAAVLTDAEGAEILAD------ 89

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++ P+LVVD+ R+++   A+ +YG HP   L + G +  +S  +    + +R+ ++   +
Sbjct: 90  ADLPLLVVDDVRRWMGPVAAAVYG-HPSRDLRIIGIT-GTSGKTTTTYLIERALMAKHSV 147

Query: 148 GPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T    I+      +LTTP    +   L+ +  +GVTHV +E SSH L   R+ GI 
Sbjct: 148 GIIGTTGTRINGEQIPTKLTTPEAPTMQALLAQMRDRGVTHVVMEVSSHALALGRVTGID 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP-AIIYADDAYSKEVMKRA 260
                FTNL +DH+D+H T + YF  K +LF +   +  E P A++  DD + + +    
Sbjct: 208 FDVAGFTNLSQDHLDFHPTMEDYFETKAQLFLQAQAEGAELPAAVVCVDDDWGQRLAGMI 267

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            ++G + L+VG   +     +V  +H     +Q++T++ EG++F +   L G F V N+L
Sbjct: 268 ADSGLQALTVGTTKQSGADWQVTDVHVTPAGRQEITVATEGEEFSYDIGLVGSFNVANSL 327

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMIL 373
           +A      +G D       +  +  VPGR + V      G+ +   VDYAH   ++  ++
Sbjct: 328 LAISCVTQLGEDPQAAAAAIADVQ-VPGRMQAV----DAGQPFLAVVDYAHKPGAVAAVV 382

Query: 374 KNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + +       +GRI +V G GG+RD  KRP+MG+ A  +AD   VTDDNPR E+P  IR+
Sbjct: 383 RTLSDYLPSPTGRIGIVLGAGGNRDHDKRPMMGEEAAKVADAVFVTDDNPRDEEPAPIRS 442

Query: 431 EIIHGIPGFIEK-------------GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            I+ G+    E                R +AIR A+      D +VVAGKGHET
Sbjct: 443 MILDGVRKAAEAREANGEKVFYDDVPGRADAIRAAVAWARPGDAIVVAGKGHET 496


>gi|271964369|ref|YP_003338565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
 gi|270507544|gb|ACZ85822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
          Length = 514

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 153/467 (32%), Positives = 236/467 (50%), Gaps = 47/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR +Q G ++VA+ G    G  F  QA+A GA AI+       +  +A + + 
Sbjct: 32  VSGITIDSRQVQRGDLYVALPGATSHGAGFSAQALAAGASAILTDE----EGRAAAVATG 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV-TGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P+LVV + R+ L   ++ +YG+   +++ +    +   S  +F+ +   R+  +  + G
Sbjct: 88  LPVLVVPDPRRVLGQVSAWVYGRPAADVMVIGVTGTSGKSTTTFLLEAGLRA--AGHKAG 145

Query: 149 PTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +   A + R    LTTP    L    + +   GVT  ++E SSH L   R+D +  
Sbjct: 146 LIGGVEIHAGELRFTPKLTTPEASDLQGLFALMREHGVTAAAMEVSSHALALGRVDAVFY 205

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+D+H+    YF  K RLF   + +    ++  DDA+ +E++       
Sbjct: 206 DVALFTNLSQDHLDFHKDLDDYFATKARLFTPEMSRAG--VVNIDDAHGRELLG------ 257

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYN 314
              LS      F     + A      V +  +G  F  + P          LPG F V N
Sbjct: 258 ---LSKIPMTTFSAEGALEADWRAADVRLGADGSSFRVVGPGGVEEDATVALPGPFNVAN 314

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEM 371
           AL A    +  G+     +  +  L  VPGR E V     GG  +   VDY+H   ++E 
Sbjct: 315 ALGAIVSLVEAGVPLRAAVAGVGTLAGVPGRMERV----PGGEDFQAIVDYSHKPGAVES 370

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+++R +T+GR+ VV GCGGDRD+GKRP+MG+ A  LAD+AI+T DNPRSEDP +I AE
Sbjct: 371 VLRSLREVTTGRLTVVLGCGGDRDRGKRPMMGEAAARLADVAILTSDNPRSEDPLRILAE 430

Query: 432 IIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +++G  G         I + +R  AI  AI      DV+VVAGKGHE
Sbjct: 431 MMNGALGVSHDERAHVIIEPDRAAAIDLAISRAGFGDVVVVAGKGHE 477


>gi|328675662|gb|AEB28337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella cf. novicida 3523]
          Length = 475

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 252/495 (50%), Gaps = 31/495 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  +++  L I  +     +I  +S DSR     W FVA+ G   DG+ +I   +A+  
Sbjct: 2   KNINQILKFLDIQTLSQNNFQIESLSLDSRKCDDKWAFVALKGQLTDGNKYIDSVLAKDI 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
            ++V++ ++  +D          I  + N ++ LS  A   Y  K P+NI+ +TGT+GK+
Sbjct: 62  -SLVLTDSHEFED-------QKRIFYIQNLKEKLSALAKWFYDYKKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSSQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISY--HKNYQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R +G+      F+NL  DH+DYH++   YF AK +LF+        AII
Sbjct: 172 MEVSSHSLDQKRTEGLDFDVAVFSNLSHDHLDYHKSMDNYFEAKAKLFQ--FKSLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K +  +   G+   ++  
Sbjct: 230 NIDDEYGQRLCNITKVPIITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKS---VKGRMEVIELDN-DIKIVIDYA 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +       +  +FGCGG+RD  KRPIM +IA + A   +VT+DN R E
Sbjct: 344 HTPDALEKALQTLANYNPNNLWCIFGCGGNRDTTKRPIMAQIAEEYASKIVVTEDNNRFE 403

Query: 424 DPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           + E I ++I  G        FI   +R +AIR +IE  N+ D++++AGKGHE  ++  NG
Sbjct: 404 NIENIFSDIKKGFKYPQKHTFIT--SREQAIRFSIENANQGDIILLAGKGHE-CYLDKNG 460

Query: 479 EKKMSVDCDIIREIL 493
            K+   + +II+ +L
Sbjct: 461 IKEYFDEREIIKNML 475


>gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 486

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 235/479 (49%), Gaps = 46/479 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  +A  ++  + G   DGH FI   IA+GA+ IV S           ++     + V
Sbjct: 21  DSRCAKANDMYFCMEGMVHDGHEFIEDVIAKGAKCIVHSKPVE------HMKKGIAYIQV 74

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI------CQRSGLSSFQ 146
           +N  + L+  AS  YG HP     +  VTGT+GKS++ S ++ +      C   G  S  
Sbjct: 75  ENVNRTLNRVASLFYG-HPSRNMKVFGVTGTNGKSTITSIIKDVYSHFAPCGYIGTISIS 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +   S      LTTP  I + K +  +   G+  V++E SSHGL+  R+  +    
Sbjct: 134 YGEVTLPPS------LTTPDAILIHKTMKDMVDAGMQAVALEVSSHGLELGRVQSVDFDV 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             F+NL  DH+D+H T + YF AK +LF   L K+  A++ ADDAY   V + A     R
Sbjct: 188 AVFSNLTYDHLDFHGTIEHYFEAKKKLFTN-LKKDGVAVLNADDAY---VDQLADATDAR 243

Query: 267 VLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           V++ G      YQ + I ++K  +     + T+  +G+ ++ +  L   + +YN L A  
Sbjct: 244 VVTYGIDHHASYQAENIRIEKTGS-----RFTLVHDGEHYEVVTNLVALYNIYNLLGAVA 298

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI  A  L +L ++  + GR E +    +   + VD+AHT + +E + +  + IT
Sbjct: 299 AMAESGIPIAKQLPYLNEIRQIEGRMERI-DEGQLFNVIVDFAHTPDGMEKVFEYAKDIT 357

Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                II VFG  G RD  KR + G+IA    D  I+T+D+PR EDP +I  EI  GI  
Sbjct: 358 EEGHSIIAVFGSAGKRDTKKRKVFGEIASRYCDSIILTEDDPRDEDPREIANEIKSGISD 417

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               FIE  +R  AIR AIE  N +D +++ GKG E       G +    D ++ R  +
Sbjct: 418 TNNIFIE--DRYAAIRQAIESANMKDTVLILGKGDEVFMYREFGREPWMGDHNVARHCI 474


>gi|323527435|ref|YP_004229588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
 gi|323384437|gb|ADX56528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
          Length = 519

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 162/496 (32%), Positives = 237/496 (47%), Gaps = 43/496 (8%)

Query: 23  MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +QW   ++     + +D+R + AG  F A      D   FI  A+ +GA A++V      
Sbjct: 18  LQWLRARVQPGAHLHADTRSLAAGDAFFAYAVEGADNRPFIDGALERGAAAVLVQP---- 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQIC 137
           + F   I ++T +L V    +     AS  YG   +++L   VTGT+GK+S + ++    
Sbjct: 74  EGFGGAIDAST-MLAVPALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAAL 132

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     IG   T +         TTP    L ++L+ L   G   V++E SSH L Q
Sbjct: 133 TALGTRCAIIGTLGTGLPGQLVHTGFTTPDAPQLQRSLAQLRHAGAKAVAMEVSSHALHQ 192

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R++G       FTNL +DH+DYH T +AY  AK RLF    P+   A+I  DDA  + +
Sbjct: 193 GRVNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRL 250

Query: 257 MK--RAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDF---------- 300
           +   R H    R ++ G     +G      +  A+     V  +  G  F          
Sbjct: 251 LASTRGH---ARTIAYGLDSASKGTPDSTPQADALLLASNVRATATGTAFHLSTSDWGDA 307

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--I 358
           D      G F V N L   G  +A  +     L  L +L  V GR + +G   +     +
Sbjct: 308 DVEVQTLGAFNVSNLLGVLGALLAADVPFDAALAELARLESVNGRMQRLGGRLQNDEPLV 367

Query: 359 YVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +DYAHT ++LE  L+ +R + + R   ++ +FGCGGDRD  KRP+MG IA  LAD  +V
Sbjct: 368 VIDYAHTPDALEKTLEALRPMAAARGGELVCMFGCGGDRDATKRPLMGAIAEKLADGVVV 427

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPRSEDP+ I  +I  G+     K  RIE    AI  AI    ++DV+V+AGKGHE 
Sbjct: 428 TSDNPRSEDPQSIIEQIAAGMKD-ASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEA 486

Query: 472 VHIVTNGEKKMSVDCD 487
              +  G+K+   D D
Sbjct: 487 TQEIM-GKKRAFSDQD 501


>gi|325676972|ref|ZP_08156644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552272|gb|EGD21962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 547

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 234/467 (50%), Gaps = 29/467 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V   ++ ++ G +F A+ G    G  F+  AIA GA A++   A      + T  S
Sbjct: 51  EVTGVELRAQAVRRGDLFAALPGAHTHGAEFVSVAIAAGASAVLTDDAGVAMLAAGTEES 110

Query: 89  --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+LV  + R+ L   ++ +YG HP   + + G +G S   +    +      +   
Sbjct: 111 AASLPVLVHPDPRQVLGEASATIYG-HPSEHMQIIGITGTSGKTTTSYLVEAGLAAAGHT 169

Query: 147 IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           IG   TI +    +R    LTTP    L    + +  +G+  V +E SSH L   R+DG+
Sbjct: 170 IGLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRERGIDTVVMEVSSHALALGRVDGV 229

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYS---KEVMK 258
           +   G+FTNL +DH+D+H+    YFNAK RLF  +       A+I  DD +     E+ +
Sbjct: 230 RFSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAVCAQRAVICTDDRWGVRMAEIAR 289

Query: 259 RAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYN 314
            AH A       +S      +       +    Q  T++  +G        LPG + V N
Sbjct: 290 HAHPADADAVETVSTHPPADWTATATSSSDTGNQVFTLTGPDGTPRTATLRLPGHYNVAN 349

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMI 372
           A +AA +C + G D    L  +  + V PGR E V    RG      VDYAH   +LE +
Sbjct: 350 AALAAAICCSAGADVDAALAGIANVDV-PGRVERV---ERGQDFLAVVDYAHKPAALEAV 405

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +R  T GRI VV G GGDRD+GKRP+MG+     AD+ +VTDDNPR+EDP  IRA++
Sbjct: 406 IATLRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQM 465

Query: 433 IHG---IP----GFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + G   +P    G + E G+R +AI  A+      DV++VAGKGHE+
Sbjct: 466 LAGAVAVPDAERGEVREIGDRADAIAAAVRWARTGDVVLVAGKGHES 512


>gi|282897071|ref|ZP_06305073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
 gi|281197723|gb|EFA72617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
          Length = 495

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 157/481 (32%), Positives = 240/481 (49%), Gaps = 15/481 (3%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL+  +     Q ++ ++  + ++S     G +F+ I G + DG  F P A+A GA A +
Sbjct: 5   ELLAVIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAGAVAAI 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
           +S   + +    +  S+  ++   N  K  +   +  YG   E   I+ VTGT+GK++  
Sbjct: 65  ISPQAASK---TSPTSDALVITASNLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++    ++ L +  +G   T    F+Q    TTP  I L   L+     G     +E 
Sbjct: 122 HLIEYFLNQANLPAALLGTLYTRWPGFSQVANHTTPFAIDLQHNLAQAVDAGCQLGIMEV 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH L Q R+ G       FTNL +DH+DYHQ  + YF AK  LF      +  A+I  D
Sbjct: 182 SSHSLAQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDY-LQGRAVINID 240

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPG 308
           D Y + +            S+        +  +    H    +  + EG    F  PL G
Sbjct: 241 DQYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNS-PFSSPLVG 299

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSN 367
           ++ + N L A    + +G+D   V++++     VPGR E +  +      + VDYAHT +
Sbjct: 300 QYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQIDPHQDISVIVDYAHTPD 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           SLE +LK  R    GRII VFGCGGDRD+ KRP MG+IA DLAD+ +VT DNPR+E+P+ 
Sbjct: 360 SLENLLKAARPFIPGRIICVFGCGGDRDKTKRPKMGRIAADLADVVVVTSDNPRTENPDA 419

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I+ G+P  + +   G+R  AI TAI      D +++AGKGHE   I+  G +K+  
Sbjct: 420 ILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQIL--GTEKIHF 477

Query: 485 D 485
           D
Sbjct: 478 D 478


>gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
          Length = 499

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 152/474 (32%), Positives = 233/474 (49%), Gaps = 53/474 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  + SDSR +     FVA  G++ DG  FI QAI +GA +++    +    F      
Sbjct: 15  NVRHLVSDSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVI----WEEHGFKWNPTW 70

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P L V + R    L A  +YG+  + +  + +TGT+GK+S++ ++ +     G  S  
Sbjct: 71  SVPNLAVSDLRHQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHWLAKSFGALGRKSAL 130

Query: 147 IGPTSTISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           IG     + F +  R T   TP  + +   L+    QG     +E SSH L Q R++G+ 
Sbjct: 131 IGTLG--NGFPEALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSSHALTQGRVNGVH 188

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TNL RDH+D+H   Q+Y  AK RLF+    K   A++  DD +  E+ ++  +A
Sbjct: 189 FDVALLTNLTRDHLDFHGDMQSYAAAKKRLFDWASLKY--AVLNLDDMFGAELAEQLQDA 246

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+  G     + + +   I   + V  S+   D   L       Q++ +  AA LC 
Sbjct: 247 SVEVIGYGLNDDSLKMAERLGI---RMVYGSLTQMDAQGL-----TLQLHTSWGAAALCS 298

Query: 324 ---------------------AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                                 + ID A     L+K   V GR + +G       + VDY
Sbjct: 299 RLIGSFNASNLLGALAVLLASEVRIDDAARELGLQK--AVAGRMQTLGGKGLP-TVVVDY 355

Query: 363 AHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           AHT ++L+ +L  +R +T    G++I VFGCGGDRD+GKRP+MG +A  LAD+ I+T DN
Sbjct: 356 AHTPDALDKVLTTVREVTESAGGKVICVFGCGGDRDRGKRPMMGTVASKLADVRIITSDN 415

Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSE+  +I +EI  G+ G    IE  +R +AI  AI      D +++AGKGHE
Sbjct: 416 PRSEEAAEIVSEIAAGMQGEYQVIE--DRAKAITLAIANARHIDTVLLAGKGHE 467


>gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 492

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 241/471 (51%), Gaps = 29/471 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V++DSR +  G +FVAI G   DGH +  QA+ +GA A+V   +  L         +
Sbjct: 29  VTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQAVERGAVAVVSERSLDL---------S 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P L+V ++ + + L AS  Y    E   +  +TGT+GK++  + ++ +    G S+  I
Sbjct: 80  VPNLIVRDSSRSIGLLASAFYAYPSEQMRLFGITGTNGKTTTTTILRDVLDVLGHSTGLI 139

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I+     ++ TTP    L + L+ +  +GVT V +E SSHGL+  R+ G     
Sbjct: 140 GTVEVRINDKIVPSKNTTPQSSELQQLLAQMRDEGVTDVMMEVSSHGLELGRVIGTDFDI 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK--EVMKRAH 261
             FTNL  DH+D+H T + Y  AK  LF +L     +   A++ ADDA +   E M    
Sbjct: 200 VGFTNLTHDHLDFHGTFENYARAKGLLFAQLGQMASRGKVAVLNADDAQTPLYETM---- 255

Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             G +V++ G   +  +    +    ++   T++ +G          G F VYN L+A G
Sbjct: 256 -TGAKVITYGIDAQADLMATDIEQTLSQTSFTLNYQGAKLPVTVQFIGRFNVYNLLLATG 314

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A G     + + LE +H   GR + +  +  G  +Y DYAHT + +E  LK++  + 
Sbjct: 315 CLLAAGYSLERIAKALEMIHPAKGRMQRL--DVPGYNVYADYAHTPDGIEQCLKSLVGVP 372

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--G 438
             +II + G GG+RD  KRP MG++A   A   I+T D+PR E  E I   I  G+    
Sbjct: 373 KEKIIFLIGTGGNRDVTKRPAMGEMASTYAGTVIITTDDPRFEAYESITKGIAAGMTHDN 432

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           F+E G+R EA+R A  +    +++V+AGKGHE   I+  G +K+ +D + I
Sbjct: 433 FVEIGDREEAVRYAARLAKPDNIIVLAGKGHEKYQII--GNEKLPLDEEAI 481


>gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS185]
 gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS185]
          Length = 499

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 230/467 (49%), Gaps = 33/467 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FS 83
           +  N+++ DSR I+ G +F+A+ G+K DG  FI +A+  GA A++V +  + Q      S
Sbjct: 18  QSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHS 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138
             +     I V   +R+  ++ A R    H        ++ +TGT+GK+S +  + Q+  
Sbjct: 78  DNVEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  +  +G     +     D+  TT   I L + L    +QG +  ++E SSHGL Q 
Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTTDAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+D +      FTNL RDH+DYH   ++Y  AK  LF          ++  DDA     +
Sbjct: 198 RVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FSTLGHGLLNLDDAVGASWL 255

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               +   ++     +G      +  A + K       +G     ++P  GE Q+++ L+
Sbjct: 256 TELKSVPAQMWGFSIEGH-----QAAAFYTKN-AKFDDQGVSATLVWP-EGETQIHSPLL 308

Query: 318 AAGLCIAI----------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            A     +          G D   + E ++ L  V GR E   T +    + VDYAHT +
Sbjct: 309 GAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTANNITLVVDYAHTPD 367

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E  L  +R   +G +  VFGCGGDRD+GKRP+MGK A   AD  +VT DN RSEDP +
Sbjct: 368 AIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQYADRIMVTSDNARSEDPAQ 427

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I  +II G+      + + +RI AI+  + +    DV+++AGKGHET
Sbjct: 428 IITDIIQGLTLSQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474


>gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Acidovorax ebreus TPSY]
 gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY]
          Length = 501

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 232/471 (49%), Gaps = 42/471 (8%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+R    + +DSR IQ G  F+A  G   DG   +  A+A+GA A +V     ++ F+  
Sbjct: 18  RQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVEC-EGVEPFA-- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI------ 136
             +   I  +   +    + AS  +G HP     +LAVTGT+GK+S A ++         
Sbjct: 75  -LAGDHIAALRGLKAATGMIASEWFG-HPTQRLQVLAVTGTNGKTSTAWWLADALNQLSK 132

Query: 137 --------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
                   C   G     + P        Q   +TTP P+ L +A +  +  G    ++E
Sbjct: 133 EELPALAGCALVGTLGMGVPPA------LQTTGMTTPDPVRLQRAFAQFAEAGHRACAIE 186

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASS GL +HRLDG ++    FTN  +DH+DYH    AY+ AK  LF+   P    +++  
Sbjct: 187 ASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFD--WPGLRASVVNV 244

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFL-FPL 306
           DD     +      +   + SV  QG    L+    +H    +  +V EG   + L   +
Sbjct: 245 DDPQGAALHAELQGSDLDLWSVSLQGP-ARLQAKHIVHTGAGLAFTVAEGAHTEVLQTQV 303

Query: 307 PGEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G + V N L V AG+  A+G+  A  L+   +L  VPGR E +    +   + VDYAHT
Sbjct: 304 IGLYNVSNLLGVIAGM-RALGVPLAQALQACARLRPVPGRMEQLAAAGQ-PLVAVDYAHT 361

Query: 366 SNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++L   L  ++ + +   GR+  VFGCGG+RD GKRP+MG +A   AD  IVT DNPR 
Sbjct: 362 PDALHQALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRG 421

Query: 423 EDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           E+P+ I  +I+ G I G   +   +R  AI  A+      DV+++AGKGHE
Sbjct: 422 EEPQSIIHQILLGTIAGTSVRAEVDRAAAIAQALADAGANDVVLIAGKGHE 472


>gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
          Length = 848

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 226/453 (49%), Gaps = 22/453 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR I+AG  FVA  G   DG  +I  A+  GA  +   +      F      + P 
Sbjct: 60  LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGG---FEWRPEWDVPN 116

Query: 93  LVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQ---ICQRSGLSSFQI 147
             + + R+   + A+  YG      +I+ VTGT+GK+SV  ++ Q   I ++   S   +
Sbjct: 117 QAIPDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIV 176

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G          Q    TTP P+ L   L      G   V++E SSHGLDQ+R++G     
Sbjct: 177 GTVGNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRT 236

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNA 263
             FTNL RDH+DYH++ + Y   K RLF         A+I  DDA+ +++   +KR+ ++
Sbjct: 237 AVFTNLTRDHLDYHRSMEEYGAVKARLFH--WQGLQNAVINTDDAFGQQLCAELKRSESS 294

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              V S G+  +  I + +  A      + ++           L G F   N   A G  
Sbjct: 295 -LHVYSYGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGAL 353

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
            A G D    L  L  +    GR + +    +   + VDYAHT ++LE  L  +R I   
Sbjct: 354 CAGGYDFQAALNALSHIRPATGRMDCIIGEGKP-LVVVDYAHTPDALEKALATLREIKQP 412

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
           +G +  VFGCGGDRD+GKRP+MG++A  LAD  +VT DNPR+EDP+ I A+I+  +  P 
Sbjct: 413 AGCLWCVFGCGGDRDRGKRPLMGEVAARLADKVVVTSDNPRTEDPQAIIADILPAVPHPA 472

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +E  +R  AI  AI      D++++AGKGHET
Sbjct: 473 LVE-ADRKAAIEQAIAQAAPNDIILIAGKGHET 504


>gi|91785298|ref|YP_560504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
 gi|91689252|gb|ABE32452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
          Length = 518

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 228/478 (47%), Gaps = 35/478 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +D+R + AG  F A   +  D   FI  AI +GA A++V      + FS  I  +  +L 
Sbjct: 33  ADTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQP----EGFSGAINPSN-MLA 87

Query: 95  VDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V    +     AS  Y    +++L V  TGT+GK+S + ++       G     IG   T
Sbjct: 88  VPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGTLGT 147

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +         TTP    L ++L+ L   G   V++E SSH L Q R++G       FTN
Sbjct: 148 GLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFTN 207

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYHQT +AY  AK RLF    P+   A+I  DDA  + ++        R ++ G
Sbjct: 208 LTQDHLDYHQTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRLLASTQGH-ARTIAYG 264

Query: 272 Y---QGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALVA 318
               QG      +  A+     V  +  G  F          +      G F V N L  
Sbjct: 265 LDSGQGALQDAPQADALLLASNVRATATGTAFHLSTSDWGDAEVEVQTLGAFNVSNLLGV 324

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNI 376
            G  +A  +     L  L +L  V GR + +G   +     + +DYAHT ++LE  L+ +
Sbjct: 325 LGALLAADVPFEAALAELAQLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLEAL 384

Query: 377 R---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R   T   G +I +FGCGGDRD  KRP+MG IA  +AD  +VT DNPRSEDP+ I  +I 
Sbjct: 385 RPMVTARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQSIIEQIA 444

Query: 434 HGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G+     K  RIE    AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 445 AGMKD-ASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 500


>gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
 gi|166027078|gb|EDR45835.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
          Length = 488

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 241/485 (49%), Gaps = 44/485 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I E+ +DSR +  G +FV I G   DGH ++     +GA A++V            +  
Sbjct: 22  EITELVNDSRKVVPGSVFVCISGAVSDGHQYVKDVAERGAAAVIVEK-------DVEVPE 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
              ++ V+NTR  L+L ++  +G   E +  +  T  K    +   V+ I +  G    +
Sbjct: 75  GLTVIKVENTRYALALMSAAYFGYPAEKLKTIGITGTKGKTTTTYMVKAILEEVG---HK 131

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI +   D  +    TTP    + K  + +   G   V +E SS GL  HR  GI
Sbjct: 132 VGLIGTIEAIIGDKTIPSNNTTPESYTIQKYFAQMVEAGCDCVVMEVSSQGLMLHRTAGI 191

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G FTNLG DHI  + H+  + Y   K  LF++        I   DD + ++V K  
Sbjct: 192 MFDIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFKQC----KVGIGNVDDKWFEDVFK-- 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEG-KDFDFLFPLPGEFQVYNA 315
            +A C + + G+ G+   L+ +   H  +     V   V G  DFD    +PGEF VYN+
Sbjct: 246 -DATCEIETFGF-GEKADLRAIDVKHISRPGYLGVWYHVTGLMDFDVEIDIPGEFSVYNS 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +C    +    + + L K+  V GR E V   S    + +DYAH + +LE +L  
Sbjct: 304 LTAIAVCRHFNVPVEKIKDAL-KVAKVKGRIEMVKV-SDDFTLMIDYAHNAMALESLLHT 361

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R    GRI+ VFGCGG+R + +R  MG+++  L+D  I+T DNPR E+P+ I  +II G
Sbjct: 362 LRDYNPGRIVTVFGCGGNRSKTRRYEMGEVSGKLSDFTIITSDNPRFEEPQAIIDDIIVG 421

Query: 436 IP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD---I 488
           +      +I+  +R EAIR AIE     DV+V+AGKGHET   +    K +  D D   +
Sbjct: 422 MKKTDGKYIDICDRKEAIRYAIEHGRPGDVIVLAGKGHETYQEI----KGVKYDMDERVL 477

Query: 489 IREIL 493
           I+E+L
Sbjct: 478 IKEVL 482


>gi|226360402|ref|YP_002778180.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238887|dbj|BAH49235.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Rhodococcus opacus B4]
          Length = 496

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 151/483 (31%), Positives = 233/483 (48%), Gaps = 40/483 (8%)

Query: 9   KDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +  PE++ +L  S       +  +  ++ DSR ++AG ++ A+ G    G  F  +A ++
Sbjct: 12  RPLPEVLRRLGRSATLCGPGDAAVTGINQDSRLVRAGDMYAALPGRHRHGIEFAAEAASR 71

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A+       L D ++ +    P +VV + R+ L   AS +YG   E  ++  VTGT+
Sbjct: 72  GAVAM-------LSDRTSDV---LPTIVVGDPRRILGPLASWMYGDPSEAFDVYGVTGTN 121

Query: 125 GKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S    +    + +G ++    G T      ++    TTP    L + L+  + Q + 
Sbjct: 122 GKTSTVYLLDAGLRAAGAVAGMMTGITVRGPGGSRSATRTTPEACELQQTLAAFAEQRIG 181

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-S 242
            V++E SSHGL  HR+DG     G FTNL RDH+D+H    AYF AK RLF+   P+  +
Sbjct: 182 AVAMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFAAKARLFD---PRHCA 238

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGK 298
            A I  DD + + +      A   V  + +  +     IH   V A       T+   G 
Sbjct: 239 AAAIGIDDEFGRRLA-----ATVTVPRLTFSSRTTAADIHASGVHADEGGTSFTLHGAGD 293

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G  QV NAL A    +  G+D    +  +E L  VPGR E V    +    
Sbjct: 294 RISVRLRLLGVHQVDNALAAIAALVVRGVDPGAAIAGIEDLDTVPGRLEAVDAG-QPFFA 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +VDY H +     +   +R++T+GR+I V G  G+RD GKR  +G  A   AD  +VTD+
Sbjct: 353 FVDYMHNTAGQRRLFPYLRSLTAGRVIAVVGATGERDPGKRAPLGATAARFADAVVVTDE 412

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +P SED +++R ++  G       GN        R EAI  A+ +    DV+VVAG+GH+
Sbjct: 413 SPYSEDAQRLREDVARGA---RSGGNADVLVVPDRTEAIAAAVTLAGPGDVVVVAGRGHD 469

Query: 471 TVH 473
            V 
Sbjct: 470 RVQ 472


>gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
 gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
          Length = 487

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 236/477 (49%), Gaps = 34/477 (7%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +F    R+  I E++ DSR ++ G +F+A+ G K DG   I    A        + AY  
Sbjct: 8   LFAHASRDPLIRELTLDSRAVRPGDLFLAVPGAKVDGRAHI----ADALARGAAAVAYEE 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ-- 135
           Q  S    +  P++ V      LS  A R YG+    +  + VTGT+GK+SV   + Q  
Sbjct: 64  QGASVLPITEVPLIPVKGLIGQLSQIAGRFYGEPSRQLELVGVTGTNGKTSVTQLLAQAL 123

Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             + QR GL    IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH
Sbjct: 124 DALGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L+Q R+  +       TNL RDH+DYH +  AY  AK +LF          ++  DD +
Sbjct: 180 ALEQGRVAALDFDIAVMTNLSRDHLDYHGSMGAYEAAKAKLFA--WSSLRARVVNLDDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGE 309
            +  +  AH    R++S   Q     L    A  N    + V ++ +G +      L G 
Sbjct: 238 GRR-LAEAHGQ-SRLISYSLQDPAATLFCKQAAFNDDGVRAVIVTPQG-EHALRSRLLGR 294

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F + N L A    +A+      +L+   +LH   GR + +G   +   + VDYAHT ++L
Sbjct: 295 FNLSNMLAAVATLLALDYPLDEILKVTPQLHGPIGRMQRLGGGDKP-LVVVDYAHTPDAL 353

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L+ +R    G+++ +FGCGGDRD GKRP+M  +A  LAD  +VTDDNPR+EDP +I 
Sbjct: 354 EKVLEALRPHAHGKLLCLFGCGGDRDSGKRPLMAAVAERLADRVLVTDDNPRTEDPLRIF 413

Query: 430 AEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
            +I    PGF +  +      R EAI   I      DV+V+AGKGHE    + NGE+
Sbjct: 414 DDI---RPGFAKPADIEFVAGRGEAIAHLIATAAADDVIVLAGKGHEDYQEI-NGER 466


>gi|159028369|emb|CAO87267.1| murE [Microcystis aeruginosa PCC 7806]
          Length = 496

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 171/501 (34%), Positives = 251/501 (50%), Gaps = 35/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEV---SSDSRHIQAGWIFVAIVGNKEDGH 57
           MKLQ+L       L N   + P+      I E+   S++S   Q G +F+ + G + DG 
Sbjct: 1   MKLQEL-------LANITPVSPISSPIASITEITGISTNSHACQPGDLFIGLPGTRVDGG 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
            F   A+  GA A ++S A +          +  ++VV +     +  A++ Y  +P   
Sbjct: 54  EFWRSALETGALAALISPAAAA---KFPPPEDACVIVVADLVTATAAIAAKFY-HYPALT 109

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
             ++ VTGT+GK++    ++    ++G+ +   G   T    F +    TTP    L  +
Sbjct: 110 LKLIGVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQAS 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+   S G     +E SSH L Q R+ G       FTNL RDH+DYH   + YF AK +L
Sbjct: 170 LAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKL 229

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNK 288
           F      +  AII  DDAY + +            SV      +  K +H +        
Sbjct: 230 FSPDY-LQGKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQST----GV 284

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + V ++ +G +  F  PL G++ + N L A    +  G+D   V+  + +   VPGR E 
Sbjct: 285 EGVMVTPQG-EIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFSGVPGRMER 343

Query: 349 VG-TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           V     +   + VDYAHT +SLE +LK  R   SGR+I VFGCGGDRD+ KRP+MGKIA 
Sbjct: 344 VSIAPDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKRPLMGKIAA 403

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVV 464
           +LAD+AIVT DNPR+E PE+I  +II GIP  I      +R  AI TAI+     D +++
Sbjct: 404 ELADLAIVTSDNPRTEAPERILEDIIAGIPPEITVQVISDRALAIDTAIQTAQPGDGVII 463

Query: 465 AGKGHETVHIVTNGEKKMSVD 485
           AGKGHE   I+  G +K+  D
Sbjct: 464 AGKGHEDYQIL--GTEKIHFD 482


>gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 487

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 150/477 (31%), Positives = 236/477 (49%), Gaps = 50/477 (10%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS+      + +I  + +DSR IQ   ++  + G   DGH F+ + + +GA  IV   A
Sbjct: 2   KLSLLFENAPDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIV--HA 59

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFV 133
             ++    T+      + V+N  + L++ AS+ YG HP +   +  VTGT+GKS++ S +
Sbjct: 60  KDIE----TMHKGVAYIKVENVNRTLNMVASKFYG-HPSHQLTVFGVTGTNGKSTITSII 114

Query: 134 QQI------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +      C   G  S   G  +   S      LTTP PI +  ++  +   G+  V++
Sbjct: 115 KDVYSHFKPCGYIGTISISYGDVTMPPS------LTTPDPILIHHSMKDMVDYGMQAVAL 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL+  R+  +      FTNL  DH+D+H T + YF AK +LF + L  +  A+I 
Sbjct: 169 EVSSHGLEMGRVQSVDFDVAVFTNLTYDHLDFHGTLENYFEAKHKLFLQ-LKSDGVAVIN 227

Query: 248 ADDAYSKEVMKRAHNAGCR--VLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            DD ++K ++     AGC+  ++S G      Y+G  IH+       N     +   G+ 
Sbjct: 228 VDDPFAKRMV-----AGCKAHIVSYGVTADADYRGDNIHIGT-----NGSTFDLIHHGET 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +     L   + +YN L A       G+    ++ +L +L  V GR E +    +   + 
Sbjct: 278 YTITTNLVAMYNIYNLLGAIAAMCESGVALKEIVPYLSELTQVDGRMERI-DEGQAFNVI 336

Query: 360 VDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VD+AHT + +E + +   +IT     II VFG  G RD  KR + G+IA    D  I+T+
Sbjct: 337 VDFAHTPDGMEKVFEFANSITPDGNAIIAVFGSAGKRDTKKRKVFGEIADRYCDSIILTE 396

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           D+PR E+P  I  EI  GI      FIE  +R  AIR AIE  N  D +++ GKG E
Sbjct: 397 DDPRDENPRDIANEIKGGIKDTNNIFIE--DRYSAIRQAIESANVNDTVLILGKGDE 451


>gi|166368093|ref|YP_001660366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
 gi|166090466|dbj|BAG05174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
          Length = 497

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 173/500 (34%), Positives = 253/500 (50%), Gaps = 33/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+    P L++ +S  P+   E +I  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLQELL-TTIP-LVSPIS-SPIAL-ETEITGISTNSHACQPGDLFIGLPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSL-----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             A+  GA A ++S A +      +D S  + ++          KF    A  L      
Sbjct: 57  RSALETGAVAAIISPAAAAKFPPPEDASVMVVADLVTAAAAIAAKFYHYPAQTL------ 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
            ++ VTGT+GK++    ++    ++G+ +   G   T    F +    TTP    L  +L
Sbjct: 111 KLIGVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASL 170

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   S G     +E SSH L Q R+ G       FTNL RDH+DYH   + YF AK +LF
Sbjct: 171 AKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLF 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNKQ 289
                 +  AII  DDAY + +            SV      +  K +H +        Q
Sbjct: 231 SPDY-LQGKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQPT----GVQ 285

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            V ++ +G +  F  PL G++ + N L A    +  G+D   V+  + +   VPGR E V
Sbjct: 286 GVMVTPQG-EIAFASPLVGQYNLANLLAAVAAVLECGVDLGKVIGQIPQFSGVPGRMERV 344

Query: 350 G-TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                +   + VDYAHT +SLE +LK  R   SGR+I VFGCGGDRD+ KRP+MGKIA +
Sbjct: 345 SIAPDQDISVIVDYAHTPDSLENVLKASRPFISGRMICVFGCGGDRDRTKRPLMGKIAAE 404

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVA 465
           LAD+AIVT DNPR+E PE+I  +I+ GIP  I      +R  AI TAI+     D +++A
Sbjct: 405 LADLAIVTSDNPRTESPERILQDIVAGIPSEITVQVISDRALAIDTAIQAAQPGDGVIIA 464

Query: 466 GKGHETVHIVTNGEKKMSVD 485
           GKGHE   I+  G +K+  D
Sbjct: 465 GKGHEDYQIL--GTEKIHFD 482


>gi|224476113|ref|YP_002633719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420720|emb|CAL27534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 494

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/466 (30%), Positives = 229/466 (49%), Gaps = 37/466 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R+I ++++DSR  + G +FVA  G   D H F    + QG + IVV S          +
Sbjct: 20  DREITDITTDSRTAEEGSVFVATKGYTVDSHKFCQDVVNQGCKLIVVES-------EQEV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V  TR+  SL   +LY    E +    VTGT+GK+S+A+ + QI ++ G  S
Sbjct: 73  EGDVTQVIVPKTRRVASLIVHKLYNYPSEQLTTYGVTGTNGKTSIATMIHQIHRKLGKGS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETVTKGENTTPETVTLTKKIHEAVEAGAESMTLEVSSHGLALGRLSGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE  A++ ADD +S+      
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLRKEKFAVVNADDDFSE------ 246

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQ 311
                 + SV     F +     A    +++  S+ G  FDF+          P  G+F 
Sbjct: 247 -----YLTSVTPYEVFTYGIHRPAQFKAERIQESLTGASFDFVTPDGTFHVDSPYVGKFN 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N + A       G     +++ + +L  V GR E +   S    + +DYAHT++ +E 
Sbjct: 302 ISNIMAAMTAVWGTGTPMQEIVDVVSQLEPVEGRLEVLDP-SLPIDLIIDYAHTTDGIEK 360

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           ++  ++     ++I + G  G+RD  K P MGK A   AD  I T DNP ++DP+ + AE
Sbjct: 361 LIDAVKPFVKQKLIFLIGMAGERDLTKTPEMGKQA-SRADYVIFTPDNPANDDPKMLTAE 419

Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +  G     ++E  +R E IR AI++    D +V+A KG E   I+
Sbjct: 420 LAKGATHDNYVEYTDRAEGIRHAIDVAEPGDTVVLASKGREPYQIM 465


>gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 499

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 240/482 (49%), Gaps = 51/482 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R   +  ++ D R I+AG +F A+ G   DG  F  +A+ +GA A++ +           
Sbjct: 47  RATSVTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGAVAVLTAGQ--------P 98

Query: 86  IRSNTPILVVDNT--RKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
           +    P LVV     R  +   A R++G      +++ VTGT+GK++  S V Q+ +R G
Sbjct: 99  VAVGVPQLVVPRASLRTAVGRVAHRIFGDPSSAVSVIGVTGTNGKTTTVSVVSQLLERLG 158

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                +G   T+ S     RLTTP    LA+ L+     G   V++E SS  +   R++G
Sbjct: 159 EG---VGVLGTLWS-----RLTTPEAPELARRLAEFRDSGRRWVAMEVSSIAIAMERIEG 210

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + +  G FTNL +DH+D+H + + YF AK RLFE    + +  +I  DD +         
Sbjct: 211 LHVRVGVFTNLSQDHLDFHGSMEDYFAAKARLFEP--ERTAIGVINVDDPW--------- 259

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQVYNAL 316
             G R+ +              +I     + I   G  F      +   L GE  + N L
Sbjct: 260 --GARLAA-----SVRVPVVPVSISAVTDIEIDAAGIRFRRNGRWYRSRLVGEHNLRNIL 312

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G D  L+   L ++    GR + +    RG  + VDYAH+ ++L  +L+  
Sbjct: 313 LAVSVLEQVGFDPDLLRGVLGEVESPRGRMQRI-LGPRG-LVVVDYAHSPDALAAVLRAA 370

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           R +    GR++VVFG GG+RDQ KRP+MG +A  LAD+AIVT DNPRSEDP  I A+I+ 
Sbjct: 371 RLLVGPRGRLLVVFGAGGERDQAKRPLMGAVAEQLADVAIVTSDNPRSEDPAAIAAQIVA 430

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G     G     +R  AI  A+ M+   DVLVVAGKGHE V ++ +G      D D++  
Sbjct: 431 GWRDRRGVRVVLDRRAAIEEAVAMMAPGDVLVVAGKGHERVQVI-DGVATPFDDIDVVHA 489

Query: 492 IL 493
            L
Sbjct: 490 AL 491


>gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 497

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 146/493 (29%), Positives = 245/493 (49%), Gaps = 31/493 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L Y  FP + N     P    ++K + +S DSR + +  +F+AI G K+DG+ FI
Sbjct: 1   MKKNNLKYILFPWIKNT----P----QKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
            +A+ +   AI+  +    +       +N PIL      + +S  A+R+Y K P     I
Sbjct: 53  FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVY-KEPAKTLKI 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V   + Q  +  G     +G       +  +  + TT S I +   L  
Sbjct: 112 IGVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHI 171

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + + +  V++E SSHGL Q+R+  I    G FTNL +DH+DYH+  + Y +AK   F +
Sbjct: 172 AAKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------GYQGKFIHLKKVCAIHNKQQ 290
              K    I+ A+D Y+K+ +++  +     +++       Y  K+I+   +    N   
Sbjct: 232 --HKIKKIILNANDKYAKKWLRKLSDKYTIAVTIQNEKQKKYSTKWINATGIKYNVNSTD 289

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR---FE 347
           V              L G F + N L++    + +    + ++    +L  + GR   F+
Sbjct: 290 VEFESSWGQGILSTCLIGYFNIQNLLLSFASMLEMNYKLSDLINTSIQLQPILGRMQKFD 349

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G      ++ +DYAHT ++L+  L  I++    +I  +FGCGG+RDQ KRP+MG I+ 
Sbjct: 350 VFGK----PKVIIDYAHTPDALKKALNAIKSYYKKKIWCIFGCGGERDQTKRPLMGSISE 405

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVV 464
            +AD  I+T+DNPR+E+  KI  EI+ G     +     NR +AI +     N  D++ +
Sbjct: 406 KIADRVIITNDNPRNENQNKIIKEIVQGCIKKEKIIIIPNREKAISSTFFKANIDDIIFI 465

Query: 465 AGKGHETVHIVTN 477
           +GKGHE   I+ N
Sbjct: 466 SGKGHENQQIIKN 478


>gi|188026237|ref|ZP_02961399.2| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
 gi|188022181|gb|EDU60221.1| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
          Length = 471

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 233/484 (48%), Gaps = 40/484 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +F+AI G++ DG  +I QAIAQG  A+V  +     +         P++ +
Sbjct: 4   DSRKAAAGDLFIAIKGHQSDGRHYISQAIAQGVAAVVAEAHGEAAEGEIRYIHGVPVVYL 63

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++    LS  A   Y +HP   + + G +G +   +  Q I Q +      +G TS +  
Sbjct: 64  NDLNSRLSALAGAFY-QHPVEKMKLVGVTGTNGKTTTTQLIAQWAQ----GLGETSAVMG 118

Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  L        TT S + +   L+ L  Q  T  ++E SSHGL Q R+  +   A 
Sbjct: 119 TVGNGLLGQVAPSENTTGSAVDIQVELTQLLKQKATLTAMEVSSHGLVQGRVAALSFDAA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   ++Y  AK  LF     K    II ADD    + ++R   A C V
Sbjct: 179 VFTNLSRDHLDYHGDMESYEAAKWLLFSTHQTKAQ--IINADDDVGLKWLQRLPQA-CAV 235

Query: 268 -----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +   +QG ++    V        +  +    +     PL G F V N L+A    
Sbjct: 236 SMEQRIPEQWQGPWLQATAVEYHDRGATIQFTSSWGNGTLESPLMGAFNVSNLLLAMATL 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +      +LE    L  V GR E     ++   + VDYAHT ++LE  L   R    G
Sbjct: 296 LTMDYSLEQLLEASSSLSPVCGRMEVFSAPNKP-TVVVDYAHTPDALEKALAAARLHCKG 354

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------- 435
           ++  VFGCGGDRD+GKRP+MG  A + AD  ++TDDNPRSE+P  I  +I+ G       
Sbjct: 355 QLWCVFGCGGDRDKGKRPLMGAAAEEWADKVVITDDNPRSEEPLDIINDIMAGILDSSRV 414

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREI 492
             IPG      R EA+ ++I   N  DV+V+AGKGHE   I+  G +++   D   +  +
Sbjct: 415 LAIPG------RAEAVTSSIMQANADDVIVIAGKGHEDYQII--GHRRLDYSDRLTVARL 466

Query: 493 LGLI 496
           LG++
Sbjct: 467 LGVL 470


>gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 497

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 158/517 (30%), Positives = 259/517 (50%), Gaps = 56/517 (10%)

Query: 1   MKLQDLIYKDFPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKL  LI     E I +  +    P +  ++ I  +S++S +++   +F+   G+K D H
Sbjct: 1   MKLGKLI-----ETIEKFVVKSNIPPELIDKDIEHISNNSNNLKENTLFICRKGSKFDSH 55

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
               +   +G    +V+           I +  P + V ++R   +  A+  Y  HP   
Sbjct: 56  TIAERLYNEGMVIALVTEE--------EINTKLPHVQVYDSRLAEAYLAAEFYS-HPYQH 106

Query: 118 L---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL---TTPSPIYLA 171
           L    VTGT+GK++ A     I Q+ GL+    G  + ++    D      TTP  I + 
Sbjct: 107 LITFGVTGTNGKTTCAHLFHHIMQQFGLNGSLSG--TVLNDILGDKFYVHNTTPDAITIM 164

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             +S     G ++ S+E SSH LDQ R++ I+      TN+ RDH+DYH T + Y N+K+
Sbjct: 165 DNMSKTHKNGGSYYSMEVSSHSLDQGRVETIRFDIAGLTNITRDHLDYHPTFEHYVNSKL 224

Query: 232 RLFEELLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            LF+ LL K+  A+I  ++ Y + +  K+  N     ++   Q K               
Sbjct: 225 HLFD-LLKKDGIAVI--NEEYVQLLNGKKVPNLVTFGVNENAQYKI------------SD 269

Query: 291 VTISVEGKDFDFLFP---------LPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLH 340
           +T    G +F    P         + GE+  +N  LV AGL + IG +   V+ ++    
Sbjct: 270 ITTGWNGTNFILRTPYGTKKVYTQMIGEYNAFNVTLVLAGL-VEIGYEIDEVISYISSFR 328

Query: 341 VVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            V GRFE +    R G  + +D+AH+ ++LE ++ + R +  GR+IVV+G GG  D+GKR
Sbjct: 329 GVDGRFEPIPEARRLGIEVVIDFAHSPDALEKVISSARKLAKGRVIVVYGAGGQADKGKR 388

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKG--NRIEAIRTAIEML 456
           P+M ++   LADIAI+T D+PR E+PE+I  E+  G+ P  +     +R EAI TAI + 
Sbjct: 389 PMMAEVVTRLADIAILTTDDPRGENPEEIINEVEKGVRPNSLSLTVLDRKEAIDTAITLA 448

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           N+ DV+++ G+GHE   I ++  K    D D+  +I+
Sbjct: 449 NRGDVVLITGRGHEPYQIFSDTLKIPFKDRDVALDII 485


>gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces bingchenggensis BCW-1]
          Length = 544

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 157/487 (32%), Positives = 235/487 (48%), Gaps = 41/487 (8%)

Query: 13  ELINQLSI-------FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           EL +QL I        P    E  +  ++ DSR ++ G ++ A+ G +  G  F  QA  
Sbjct: 37  ELADQLGIDAPKAPDAPKAPEEAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAD 96

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGT 123
            GA A++     +  D +A   +  P+LVV+N R  +   A+ +YG+   ++L   +TGT
Sbjct: 97  LGAVAVLTDPGGA--DRAAA--TGLPVLVVENPRGRMGALAATIYGEPGRDLLQIGITGT 152

Query: 124 SGKSSVASFVQ---QICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176
           SGK++ A  V+   +     G  S   G   T+ S   D R+    TTP    L    + 
Sbjct: 153 SGKTTTAYLVEGGLKAAAAKGDGSL-TGLIGTVESRIGDERIKSERTTPEATDLQALFAV 211

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV  +++E SSH L   R+DG       FTNL  +H+++H   + YF AK +LF +
Sbjct: 212 MRERGVGSLAMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSDMEDYFQAKAQLFTK 271

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SV 295
              +   A+I  DD Y K ++  +        + G+         V       + TI   
Sbjct: 272 A--RSRAAVINLDDEYGKRLVDLSEVPVTTFSAEGHPDAHWRAADVTVGPLGSEFTILGP 329

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+      PLPG F V N L A       GID     + +  +  VPGR E V      
Sbjct: 330 NGESVTAAAPLPGAFNVANTLAAVVALAVAGIDPQTAADGVAAVPGVPGRLERVDA---- 385

Query: 356 GRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G+ Y   VDYAH ++++E +L+ +R +T GR+  V GCGGDRDQ KR  MG      AD 
Sbjct: 386 GQPYLAVVDYAHKTDAVESVLRALRKVTEGRLHAVLGCGGDRDQQKRGPMGAAVARYADT 445

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLV 463
           A++T DNPRSEDP  I A ++ G   +P   E+G+ +      +AI  A+      D ++
Sbjct: 446 AVLTSDNPRSEDPLAILATMLAGAAEVPAH-ERGDVLVDADRAQAIAAAVARAEPGDTVL 504

Query: 464 VAGKGHE 470
           VAGKGHE
Sbjct: 505 VAGKGHE 511


>gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
 gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
          Length = 507

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/480 (30%), Positives = 240/480 (50%), Gaps = 45/480 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR    G++F+A+ G   DG  ++  A   GA   VV+    L    + I    P 
Sbjct: 32  LAYDSRKAAPGYLFIAVPGVHTDGRRYVADAAQHGA---VVALGAPL---PSAIDLPIPY 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC----QRSGL---S 143
           + V++ R  L+  A   YG     +  + VTGT GK++ ++ +  +     +R+G+   +
Sbjct: 86  IEVEDVRTALADLACAFYGFPARELCTIGVTGTDGKTTTSNIISTLFDAAGRRTGMMTTA 145

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +F++        +A   R +T   + + + L  +     TH  +E++SHGL+  R+ G  
Sbjct: 146 NFKLNG----QEWANATRQSTLEALEIQEFLRKMVEMQATHAVIESTSHGLELQRVRGCA 201

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-------AIIYADDAYSKEV 256
              G  TN+  +H+D+H+T  AY  AK RLFE L P++         AI+  DD+ S EV
Sbjct: 202 FDVGVVTNITHEHLDFHKTLDAYRRAKARLFEMLDPEQDKGQGYRKVAILNKDDS-SYEV 260

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +K      CRV  + Y  +     +   +H   ++    + +   +     PL G F V 
Sbjct: 261 LK----PYCRVPILDYGIETDAAVRAVDLHLQASRTAFRLILPDAECQIETPLIGRFNVS 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A     + GI   ++ + L  +  VPGR E +    +   + VDYAHT++SL+ +L
Sbjct: 317 NCLAAIATAYSQGIPLDVITQTLATIKGVPGRMEHID-EKQNFSVIVDYAHTADSLQKVL 375

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R +T+G+++VVFG  G+RD+ KRP+MG +A  ++D  ++TD++PR ED E I  EI 
Sbjct: 376 AILRPVTTGKLMVVFGSAGERDRQKRPVMGSVAAQMSDFFVITDEDPRDEDRESILREIA 435

Query: 434 HGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G           F+   +R EAI TA       D +++AGKGHE   I+  G  K+  D
Sbjct: 436 VGAEQAGKQEGSDFLCIADRREAIATAFSRAQPGDTVLLAGKGHEQSIII--GRDKLPWD 493


>gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 513

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 159/493 (32%), Positives = 241/493 (48%), Gaps = 43/493 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +L+ KD+P  +   SI        +I  V   ++ ++ G IF+   G K  G  F+
Sbjct: 25  LQLAELL-KDWPCSVTGGSI------RTEITGVEDYAQAVRPGDIFIVRKGKKTSGSRFV 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+A+GA AIV   + SL      I    P + V NT  FLS  +++L     E  +++
Sbjct: 78  KEALARGAAAIVSEESISL----PIIDKEIPFVWVPNTALFLSYASAKLAAFPAEALSVI 133

Query: 119 AVTGTSGKSSVASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           A+TGT+GK++V+ FV Q+           G   F +      +S+ +   LTT     L 
Sbjct: 134 AITGTNGKTTVSHFVSQLLNALHKKAAVIGTIGFYLDGEKQQTSYEE---LTTLQAKELH 190

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L     +GV+HV +EASS GL QHRLD   +  G F NL  DH++ H   +AY  AK 
Sbjct: 191 PILKQCVRKGVSHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKK 250

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290
           RL +  L K+   ++  DD + + V        C   S G+     +H++ V     K  
Sbjct: 251 RLAD--LSKK--LVLNGDDNFCRSVGIYDKKKSC---SFGFDNHNDLHIQIVSETVGKTV 303

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +     +     P  G++ V N + A      +G     ++EH+  L +  GR E + 
Sbjct: 304 LCLQTSASEHIIEIPFVGKYHVQNTVAALMAVWRLGTPMDDIVEHMWSLRLPEGRLEKI- 362

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N  G  +YVDYAHT+ +L+ +L+      S  I +VF CGG+RD+ KR  MG +A   A
Sbjct: 363 DNPVGIDVYVDYAHTAEALQAVLQTFD--RSKTIYLVFSCGGNRDKAKRFAMGAVASKYA 420

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV 464
           D+  +T DNPR EDP  I   I   I GF E+       +R  AI  A+    K D+++V
Sbjct: 421 DVIYLTTDNPRDEDPIIINESI---IAGFTEQQYYEIYLDRKVAIHQALAKAKKGDIVLV 477

Query: 465 AGKGHETVHIVTN 477
           AGKGHE    + N
Sbjct: 478 AGKGHEQTQQIKN 490


>gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 499

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 151/481 (31%), Positives = 227/481 (47%), Gaps = 29/481 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  +  I+ +  DSR + +G +F  + G   DGH F   A+  GA A++       +   
Sbjct: 23  QLSDEIISSIEFDSRKVTSGSLFCCVPGLHNDGHKFAVAAVKSGAAALLC------EHIP 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRS 140
             ++ + PI++  + R  L   AS  +  HP    +++ VTGT+GKS+    ++ I +  
Sbjct: 77  DGVKKDVPIILSSDARSALGAIASSFH-DHPSESLSMVGVTGTNGKSTTTYMIRSIMRGR 135

Query: 141 GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           G    ++G   TI+       +    TTP    +   LS +         +E SSHGL Q
Sbjct: 136 G----KVGLLGTITYDDGTKEIEADRTTPEGSEIQAFLSEMVRSSCNGCVMETSSHGLAQ 191

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL G       FTNL  +H+D+H   + YF  K  LF + +      I   DD Y K +
Sbjct: 192 GRLSGCLFDVAVFTNLTPEHLDFHGDMERYFETKKLLFTQYMKYNCKKIFNVDDPYGKRL 251

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           ++    +     S       +    +          +++EG+      PL G + V NAL
Sbjct: 252 LRECSGSDVVTYSSKSSSATVTGSNISLDVGGLFFDLAIEGRVNRVRLPLIGRYNVSNAL 311

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA  C +IG     +   LE +  VPGR E      RG  I VDYAHT ++L  +L   
Sbjct: 312 AAAAACHSIGFSYDEIQRGLENMPQVPGRMERYLFKKRGCAI-VDYAHTPDALSNLLSAA 370

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R I  GR+I VFG GG+R +G R  MG+IA   AD  ++T DNPR EDP  I  +I+ G+
Sbjct: 371 REICKGRLIGVFGLGGERFRGNRWAMGEIAAQKADHLVLTMDNPRGEDPLSIVEDILEGV 430

Query: 437 PGFIEKGN-------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                 GN       R +AI  A++M  + DV+V++GKG E  +I+  G+K    D + I
Sbjct: 431 HKV--DGNSYDVIIDRKDAIYRALDMSREGDVVVISGKGPEN-YILIKGKKTPYSDSESI 487

Query: 490 R 490
           R
Sbjct: 488 R 488


>gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS223]
 gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS223]
          Length = 499

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 226/460 (49%), Gaps = 19/460 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +  N+++ DSR I+ G +F+A+ G+K DG  FI +A+  GA A++V +  + Q      R
Sbjct: 18  QSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHR 77

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138
            N      I V   +R+  ++ A R    H        ++ +TGT+GK+S +  + Q+  
Sbjct: 78  DNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  +  +G     +     D+  TT   I L + L    +QG +  ++E SSHGL Q 
Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+D +      FTNL RDH+DYH   ++Y  AK  LF          ++  DD   +  +
Sbjct: 198 RVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FSTLGHGLLNLDDTVGESWL 255

Query: 258 KRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
               +   ++      G+Q    + K           T+     + +   PL G F + N
Sbjct: 256 TELKSVPAQMWGFSIEGHQAAAFYTKDAKFDDQGVSATLVWPEGETEIHSPLLGAFNLSN 315

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G D   + E ++ L  V GR E   T ++   + VDYAHT +++E  L 
Sbjct: 316 LLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTAKNITLVVDYAHTPDAIEQALN 374

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    G +  VFGCGGDRD+GKRP+MG+ A   AD  +VT DN RSEDP +I  +II 
Sbjct: 375 ALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAEQYADRIMVTSDNARSEDPAQIITDIIQ 434

Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G+      + + +RI AI+  + +    DV+++AGKGHET
Sbjct: 435 GLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474


>gi|50086343|ref|YP_047853.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
 gi|49532319|emb|CAG70031.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
          Length = 499

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 156/475 (32%), Positives = 237/475 (49%), Gaps = 54/475 (11%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           ++WR++       DSR+IQ   +F+A+      E   +F   A+AQGA  I+      L+
Sbjct: 16  IEWRDQPFQGFCLDSRYIQKDQLFIALTSYSQPEKTRIFAETALAQGALGIISEQPLGLE 75

Query: 81  D--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV----- 133
                A +R        +  +K   + A+R        I+AVTGT+GK++++  V     
Sbjct: 76  REWVCADVRHRMGQWQKNYLQKTEPVNAAR--------IIAVTGTNGKTTISRLVAELLT 127

Query: 134 --QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             QQ C   G +   I P    S+       TT   + L  AL     +G    S+EASS
Sbjct: 128 LQQQRCAVMGTTGNGILPHLNPSTH------TTLDALQLQSALHQYVKEGARFASLEASS 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T  AY  AK RLF         A+I  DDA
Sbjct: 182 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLAAYAEAKSRLFA--FKSLKVAVINQDDA 239

Query: 252 YSKEVMKR--AHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-------D 301
           Y+ E+MK   A N A  ++L+              A ++ +++  S+ G  F       +
Sbjct: 240 YA-ELMKAVAAQNPAQPQILTYSL--------TQSADYSVKELQYSLSGARFILVGPKGE 290

Query: 302 FLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +L   PL G F V N + A       G     +++ + +L   PGR + +    R     
Sbjct: 291 YLVESPLLGHFNVENLIAALIAAEQAGFALEELVKTVPQLIGAPGRMQVIRDQDR--LFV 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++L  +LK +R     ++  VFGCGGDRD+GKRP+M + AL+ A+  I+T DN
Sbjct: 349 VDYAHTPDALNQVLKTLRRHVQQQLWAVFGCGGDRDRGKRPLMTQAALNGANPVILTSDN 408

Query: 420 PRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PR+E+P++I A++  GI        E  +R EAI+  ++     D++V+AGKGHE
Sbjct: 409 PRTENPKQIFADMKTGIDFSHHQIYEIHDRREAIKYVVQHAQAGDIVVIAGKGHE 463


>gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
 gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
          Length = 501

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 157/498 (31%), Positives = 237/498 (47%), Gaps = 56/498 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V+ DSR  + G  FVAI G   DG  F+PQA+A GA  +V       +D        
Sbjct: 23  IDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQALANGASLVVAE-----RDVE-----G 72

Query: 90  TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P +VV + R  L+  A+   G   H   +  +TGT+GK++ +S+V      +     + 
Sbjct: 73  APTVVVPDARVALAALATATAGHPSHDVTVYGITGTNGKTT-SSYVLHGILSAAYGEEKT 131

Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G  +T        R     TT     +   L+ +   GV HV +E SSHG+  HR+ G +
Sbjct: 132 GLLTTAEIVVGREREPAVRTTGEAPQVQGNLARMRDAGVEHVVLETSSHGIHLHRVAGTR 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A  FTNL RDH+D H T + YF  K RLFE     + P +   DDAY   ++  A   
Sbjct: 192 YAAALFTNLTRDHLDLHGTMEDYFLTKRRLFEW---TDGPKLTNVDDAYGARIV--AEVP 246

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VEGKD----FDFLFPLPGEFQVYN 314
           G     V     +  + KV         T++     ++G+D     +   PL G++ V+N
Sbjct: 247 GTLGFGVSENADY-RITKVHPSDGGTAFTLTTPERFLDGRDAPGVIELQMPLLGDYNVHN 305

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMIL 373
              A+ + + +G+    ++  +  +  VPGRFE V    ++G  + VDYAHT   LE++L
Sbjct: 306 VAGASAIALEMGMPLDTLVGAVAHMAQVPGRFERVPAATAKGFEVVVDYAHTEVGLELVL 365

Query: 374 KNIRTIT------------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              R +              GR+I V+G  G RD  KRP MG+ A  LAD+ I+T+D+  
Sbjct: 366 DVARAVVGRDHADGGVRSEGGRVICVYGAAGRRDPAKRPKMGEAASRLADVNIITNDDTY 425

Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            EDP+ I  E++ G     +  N      R +AIR A+      D++VVAGKGHE V  +
Sbjct: 426 DEDPQAIADEVMAG----ADPSNTTIVLDRRDAIRQALTQARPGDIVVVAGKGHEHVQHL 481

Query: 476 TNGEKKMSVDCDIIREIL 493
             G+     D  ++ E+L
Sbjct: 482 PGGDVDFH-DTTVVTELL 498


>gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
 gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
          Length = 484

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 149/492 (30%), Positives = 251/492 (51%), Gaps = 27/492 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +S DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 7   KRINQILKFLDIKTLSQNNFQIESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
            ++V++ ++  +D          +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 67  -SLVLTDSHQFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY   +   ++ 
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYY--KKYQNLV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K +  +   G+   ++  
Sbjct: 235 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 292

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 293 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   I+T+DN R E
Sbjct: 349 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIIITEDNNRFE 408

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E I ++I  G       I   +R +AIR +IE  N+ D++++AGKGHE  ++  NG K
Sbjct: 409 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 467

Query: 481 KMSVDCDIIREI 492
           +   + +II+ +
Sbjct: 468 EYFDEREIIKNM 479


>gi|93007201|ref|YP_581638.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychrobacter
           cryohalolentis K5]
 gi|92394879|gb|ABE76154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter cryohalolentis K5]
          Length = 570

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 216/413 (52%), Gaps = 47/413 (11%)

Query: 91  PILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           P+L V N R FL +L  +RL  + P     ++AVTGT+GK++++  V Q+ Q +G+SS  
Sbjct: 146 PVLHVPNIRDFLGTLIQARLQYQQPVTLPTVIAVTGTNGKTTISQLVAQLTQLTGMSSAV 205

Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +G        +  Q +  TT   + + + L  +  +G   +++EASSHGLDQ RL G+ +
Sbjct: 206 MGTAGNGRFGALVQASH-TTGDVLAVQQFLYQMGKEGAELLALEASSHGLDQQRLQGMPV 264

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNA 263
               +TNL RDH+DYH     Y  AK +LF++   P  + AII  DD +++ ++  AH +
Sbjct: 265 SVAIYTNLSRDHLDYHADMAEYAAAKAKLFDKAHFPDLTHAIINIDDEHAQIMLDTAHAS 324

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG------KDFD--------FLFPLPGE 309
              V +         LK    +     +T S+ G       DFD         + PL G 
Sbjct: 325 NLTVWTYSLDS----LKTATFV--AANITPSLRGVEISLRTDFDDGTMNHLDIVSPLLGR 378

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP------GRFEFVGTNSRGGRIYVDYA 363
           F V N L A    +A+GI     LEH+    VVP      GR + V +N   G   VDYA
Sbjct: 379 FNVANLLAAMAAAVALGIS----LEHIAA--VVPQLQGAVGRMQRVPSND--GCFIVDYA 430

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L  +L +++T   G++  VFGCGGDRD GKRP+M +  L  AD  ++T DNPR+E
Sbjct: 431 HTPDALSQVLASLKTHCKGQLWAVFGCGGDRDAGKRPLMAQAGLAGADKVVLTADNPRTE 490

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHET 471
           DP  I  ++  G+     +   IE     AI  A+      D++V+AGKGHET
Sbjct: 491 DPNAILQDMQVGMSTEQYQRTHIEPARQAAIEYAVNQAAADDIVVIAGKGHET 543


>gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 495

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 29/468 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  +S +S   Q G +F+AI G+K+DG  +IP AIA+G  AI+  +    +      
Sbjct: 17  ECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYIPSAIAKGVAAILAEAKGQTKHGEIHK 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143
             + PI+  +   K LS  A   Y + P   L    +TGT+GK++++  +       G +
Sbjct: 77  LHDVPIIYFNQLNKMLSAIAGHFY-QQPSRFLRLIGITGTNGKTTISYLLANWLSLLGET 135

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G     I      +  TT S I + + L  +  QGV    +E SSHGL Q R+  +
Sbjct: 136 SAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQVCDQGVKFSIIEVSSHGLVQDRVSNL 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  F+NL +DH+DYH     Y  AK +LF EL    S  II  DD   K  +     
Sbjct: 196 NFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSEL--NVSKRIINVDDTVGKNWLVHLPQ 253

Query: 263 A----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNAL 316
           A        +   + G ++  +K+  IH+   V I+        +    L GEF V N L
Sbjct: 254 AVAVTANNSIPHNWPGYWLCARKI--IHHTSGVNINFNSYWGSGEIYSNLIGEFNVSNIL 311

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           ++    + +G     +++   KL  + GR E    +     + VDYAHT ++L   L  +
Sbjct: 312 LSLATLLVLGYSLKNLVKTSRKLQAICGRMEVFSAHGWP-VVIVDYAHTPDALAKALLAV 370

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +    G+I  +FGCGG+RD+ KRPIMG IA + AD  I+T+DNPR E+P+ I  +I    
Sbjct: 371 KMRCQGKIWCIFGCGGNRDKSKRPIMGAIAEEYADYIIITNDNPRWEEPQDIIEDI---K 427

Query: 437 PGFIEKGN---------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            GFI  GN         R  AI+ AI   + QD++++AGKGHE   I+
Sbjct: 428 CGFIN-GNHTNKTVILCRSLAIQHAIIHASPQDIILIAGKGHENYQII 474


>gi|282899876|ref|ZP_06307837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195146|gb|EFA70082.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 495

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 240/481 (49%), Gaps = 15/481 (3%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL+  +     Q ++ ++  + ++S     G +F+ I G + DG  F P A+A GA A +
Sbjct: 5   ELLAVIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAGAVAAI 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
           +S   + +       S+  ++   +  K  +   +  YG   E   I+ VTGT+GK++  
Sbjct: 65  ISPQAASK---TPPTSDALVITATSLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++    ++ L +  +G   T  + F+Q    TTP  I L   L+     G     +E 
Sbjct: 122 HLIEYFLNQANLPAALLGTLYTRWTGFSQVANRTTPFAIDLQHNLAQAVDAGCQLGIMEV 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH L Q R+ G       FTNL +DH+DYHQ  + YF AK  LF      +  A+I  D
Sbjct: 182 SSHSLVQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDY-LQGRAVINID 240

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPG 308
           D Y + +            S+        +  +    H    +  + EG    F  PL G
Sbjct: 241 DHYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNS-PFSSPLVG 299

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSN 367
           ++ + N L A    + +G+D   V++++     VPGR E +  N      + VDYAHT +
Sbjct: 300 QYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQINPHQDISVIVDYAHTPD 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           SLE +LK  R    GR+I VFGCGGDRD+ KRP MG+IA DLAD+ +VT DNPR+E+P+ 
Sbjct: 360 SLENLLKAARPFIPGRMICVFGCGGDRDKTKRPKMGRIAADLADVVVVTSDNPRTENPDA 419

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I+ G+P  + +   G+R  AI TAI      D +++AGKGHE   I+  G +K+  
Sbjct: 420 ILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQIL--GTEKIHF 477

Query: 485 D 485
           D
Sbjct: 478 D 478


>gi|170696716|ref|ZP_02887831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
 gi|170138379|gb|EDT06592.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
          Length = 515

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 227/475 (47%), Gaps = 32/475 (6%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +D+R + AG  F A   +  D   FI  A+ +GA A++V      + FS  I ++T  L 
Sbjct: 33  ADTRSLTAGDAFFAYAVDGADNRAFIDGALERGAAAVLVQP----EGFSGAIDAST-TLA 87

Query: 95  VDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V    +     AS  YG   +++L   VTGT+GK+S + ++       G     IG   T
Sbjct: 88  VPALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAALTALGKRCAIIGTLGT 147

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +         TTP    L ++L+ L   G   V++E SSH L Q R++G       FTN
Sbjct: 148 GLPGQLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAVFTN 207

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH T +AY  AK RLF    P+   A+I  DDA  + ++        R ++ G
Sbjct: 208 LTQDHLDYHHTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRLLASTQGH-ARTIAYG 264

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALVAAGL 321
                    +  A      V  +  G  F          +      G F V N L   G 
Sbjct: 265 LDSAQQSAPQADASLLASNVRATPTGTAFHLSTSDWGNAEVEVQTLGAFNVSNLLGVLGA 324

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTI 379
            +A  I     L  L KL  V GR + +G   +     + +DYAHT ++LE  L+ +R +
Sbjct: 325 LLAAEIPFDAALAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLEALRPM 384

Query: 380 TSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            + R   +I +FGCGGDRD  KRP+MG IA  +AD  +VT DNPRSEDP+ I  +I  G+
Sbjct: 385 AAARGGELICMFGCGGDRDATKRPLMGAIAEKMADGVVVTSDNPRSEDPQSIIEQIAAGM 444

Query: 437 PGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                K  RIE    AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 445 KD-ASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 497


>gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
 gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
          Length = 508

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 234/457 (51%), Gaps = 19/457 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--- 89
           ++ +S+ I+  +IFVAI G K+DGH +I  AI   A AI++    + ++F   +      
Sbjct: 31  IAYNSKLIKNKYIFVAIKGLKDDGHKYIESAINNKA-AIIIYDNSADKNFIKELEDKHTY 89

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V N R+ L+  +++ + +  +  N +A+TGT+GK++    ++ + + +   +  I
Sbjct: 90  VYFIAVKNPRECLAYISAKFFDEPTKKINTIAITGTNGKTTTTYLLKSVLEANKNKTALI 149

Query: 148 GP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + I        LTTP  I L         + V+H+ +EASS  L   R D +    
Sbjct: 150 GTIKNMIGKTEIKTNLTTPESIDLENIFDKALKKEVSHIVMEASSQALAMDRCDYLNYDT 209

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEVMKRAH 261
             FTN+  DH+DYH   Q Y  AK++LF   L KES      AI+  D    K++     
Sbjct: 210 AIFTNITEDHLDYHGDMQNYLKAKLKLFS--LLKESSKNKKLAIVNIDTDNFKQISNYIK 267

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL-FPLPGEFQVYNALVAA 319
             G ++++ G   K  +  K+ ++++K  +     +GK    +   + G F + N+L   
Sbjct: 268 KLGIKMVTYGLNEKADYYGKIISLNSKNTEYEFYSKGKFISKVKLSMLGRFNILNSLSVL 327

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                  +D    ++ + K+ V  GRFE V          VDY+HT +SLE ILK  R +
Sbjct: 328 AYVSEYKLDIEKSIKAMRKVQV-AGRFEIVTKEKHPFIAAVDYSHTPDSLENILKEARKL 386

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              R+IVVFGCGGDRD+ KRPIM  IA   +DI+I+T DN R+ED  +I  +I  G    
Sbjct: 387 NPKRVIVVFGCGGDRDRKKRPIMASIAEKYSDISILTADNQRTEDINQIMNDIEKGFKNK 446

Query: 440 IEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
             K   +R EAI  AI+   + D++++AGKGHET  I
Sbjct: 447 DYKKIIDRKEAIFEAIKEAKENDIVIIAGKGHETYQI 483


>gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
 gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
          Length = 483

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 243/477 (50%), Gaps = 29/477 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++   + DSR +  G IF+A  G + DG+ F   A+ +GA AI+ SS Y+   F + ++ 
Sbjct: 22  EVRNFTRDSRCVGVGDIFIACRGEQHDGNDFSADAVERGAIAIL-SSFYN--PFLSIVQ- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               +V     +  +  A++ YG+  E   +  VTGT+GK++V   ++ +   S   +  
Sbjct: 78  ----IVTSCVEQLEAELAAKFYGRPSEKLEVFGVTGTNGKTTVTYMIKALLDHSHKPAGL 133

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG    I    +  +  TTPS   L K  + +       V++E SS GL+ +R       
Sbjct: 134 IGTIEHILGEGSIHDSFTTPSACLLQKYFAEMVKNRRKAVAMEVSSIGLELNRTAQTSFD 193

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+  DH+D+H T + Y  AK +LF + LPK   A+I AD  Y+      A +   
Sbjct: 194 VGILTNVTLDHLDFHGTLENYLTAKEKLFSQ-LPKNGCAVINADSPYASRFCSIASS--- 249

Query: 266 RVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGL 321
           R ++ G +    +  + C +       + T+   GK +    PL G + VYN L A A +
Sbjct: 250 RCVTYGIEEAAEY--RACDLQLSLLGTRYTLVHRGKSYLCKSPLIGRYNVYNTLAAIAAV 307

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                 +   +L  LE   +  GR E V +      IY+DYAHT ++L+ +L  ++ + S
Sbjct: 308 HERSNQELPELLVALENAPLPKGRLEPVFSGP--CPIYIDYAHTPDALDNVLATLKELMS 365

Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR+I+VFGCGGDRD+ KR +M ++A +    +IVT DNPR EDPE I  EI  G    
Sbjct: 366 CQGRVIIVFGCGGDRDRSKRKLMARVA-ERYGFSIVTTDNPRKEDPEVIIHEICEGFTSQ 424

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +  + +R +AI  AI M + +DV+++AGKGHET  I  +     S D  ++ E+L 
Sbjct: 425 KYCVEQDRKKAILRAISMASDKDVVLIAGKGHETYQIFKHQTLYFS-DKQVVNEVLA 480


>gi|305680919|ref|ZP_07403726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659124|gb|EFM48624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 497

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 221/457 (48%), Gaps = 20/457 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV  +S  + AG +F A+ G +   H     A    A  +   + + L   +   R  
Sbjct: 28  ITEVGLNSAELPAGALFAAVPGTRV--HGARFAADTAAAAILTDEAGWGLLSAAGETR-- 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146
            P+LVVD+ R  L + A+ +YG  P + L V G +G S   +    ++     +G     
Sbjct: 84  -PVLVVDDVRSVLGVAAAAVYGD-PSSQLTVIGITGTSGKTTTSYMLEAGLLAAGYRVGL 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG T T I+       LTTP    L      + ++GVTHV +E SSH L   R+ G+K  
Sbjct: 142 IGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHVVMEVSSHALMLGRVLGVKFD 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAG 264
              FTNL +DH+D+H T   YF+AK   F    P + + A++  DD +  E M     +G
Sbjct: 202 VAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARAVVCVDDEWG-EKMASVFGSG 260

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            R L+   Q     +  V  +    Q     +  G       PLPG F V NA +A  L 
Sbjct: 261 VRTLATRGQAGDYTVSAVQTVERGGQEFRLAAPSGAVVAATVPLPGRFNVANAALALALA 320

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+D   +L  L  + V PGR E V        + VDYAH   +++ +L  +R   +G
Sbjct: 321 DTVGVDMTALLPGLAGVGV-PGRMEVVDCGQDFLAV-VDYAHKPAAIKAVLATVRGQITG 378

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           RI +V G GGDRD  KRPIMG  A   AD  +VTDDNPR+EDP  IRA+++ G       
Sbjct: 379 RIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNEDPAAIRAQVLAGTAAGSAE 438

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +E G+R  AIR  +      D +++AGKGHE   ++
Sbjct: 439 VVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI 475


>gi|225021921|ref|ZP_03711113.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945308|gb|EEG26517.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 497

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 223/457 (48%), Gaps = 20/457 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV  +S  + AG +F A+ G +   H     A    A  +   + + L   +   R  
Sbjct: 28  ITEVGLNSAELPAGALFAAVPGTRV--HGARFAADTAAAAILTDEAGWGLLSAAGETR-- 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146
            P+LVVD+ R  L + A+ +YG  P + L V G +G S   +    ++     +G     
Sbjct: 84  -PVLVVDDVRSVLGVAAAAVYGD-PSSQLTVIGITGTSGKTTTSYMLEAGLLAAGYRVGL 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG T T I+       LTTP    L      + ++GVTHV +E SSH L   R+ G+K  
Sbjct: 142 IGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHVVMEVSSHALMLGRVLGVKFD 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAG 264
              FTNL +DH+D+H T   YF+AK   F    P + + A++  DD +  E M     +G
Sbjct: 202 VAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARAVVCVDDEWG-EKMASVFGSG 260

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLC 322
            R L+   Q     +  V  +    Q+  ++   G       PLPG F V NA +A  L 
Sbjct: 261 VRTLATRGQAGDYTVSAVQTVERGGQEFQLAAPSGSVVAATVPLPGRFNVANAALALALA 320

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+D   +L  L  + V PGR E V        + VDYAH   +++ +L  +R   +G
Sbjct: 321 DTVGVDMTALLPGLAGVGV-PGRMEVVDCGQDFLAV-VDYAHKPAAIKAVLATVRGQITG 378

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           RI +V G GGDRD  KRPIMG  A   AD  +VTDDNPR+EDP  IRA+++ G       
Sbjct: 379 RIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNEDPAAIRAQVLAGTAAGSAE 438

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +E G+R  AIR  +      D +++AGKGHE   ++
Sbjct: 439 VVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI 475


>gi|238916651|ref|YP_002930168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
 gi|238872011|gb|ACR71721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
          Length = 497

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 145/452 (32%), Positives = 231/452 (51%), Gaps = 30/452 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++SDSR +Q G+ FV I G   DGH +I Q   + +  +V+   Y  +D  A + S    
Sbjct: 34  ITSDSRKMQDGYAFVCIKGAVSDGHKYIDQIKDKASVIVVLDGEYEAKDCKAAVVST--- 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT 150
              DNTR  L+L ++ +YG     +  +  T  K    +   V+ + +  G+ +  IG  
Sbjct: 91  ---DNTRLALALMSAAVYGNPDRKLFTIGITGTKGKTTTTYMVKNVLEACGIKTGLIGTI 147

Query: 151 STI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            TI    A     TTP  I + ++ + +   G   V +E SS GL   R  GI    G F
Sbjct: 148 ETIIGDEAIPAHNTTPESIEIHQSFAKMVDAGCKAVVMEVSSQGLKLDRTAGIMFDIGVF 207

Query: 210 TNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           TNL  DHI  + H++ + Y N K +LF++        I+ ADD +++++++    A C+V
Sbjct: 208 TNLEPDHIGPNEHESFEDYLNCKAKLFKQC----KVGIVNADDKHTQDILR---GAICKV 260

Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCI 323
            S G      I  + +  +H   ++ ++ +     +      LPG+F VYN+L A  +  
Sbjct: 261 ESYGIGDNADIKAENIELLHEPGKIGLTYDCTGLVNMKVELNLPGKFSVYNSLCAIAITR 320

Query: 324 AIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              +D   + E L+  HV V GR E V   S    + +DYAH + +LE IL  ++     
Sbjct: 321 HFDVDEEALKETLK--HVKVKGRIELVKV-SDDFTLMIDYAHNAMALESILTTLKEYHPH 377

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----G 438
           R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNPR E+PE I  +I  GI      
Sbjct: 378 RLVCLFGCGGNRSKERRYEMGEVSGKLADLTIITSDNPRFEEPEAIIEDIKTGIAKTTGK 437

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            ++  +R EAI+ AIE     D++V+AGKGHE
Sbjct: 438 HVDITDRKEAIKYAIEHGEPGDIIVLAGKGHE 469


>gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
 gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
          Length = 493

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 154/511 (30%), Positives = 241/511 (47%), Gaps = 48/511 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++D++ +     +N L +      E + N +SS+S+ IQ   +F+   G   D H  +
Sbjct: 1   MKIKDILRE-----LNSLILKVNCDEELEFNYISSNSKDIQENTLFICRKGTSFDSHNIV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
                +GA   VV            IR    I VVD +R   S+ AS  Y K  E ++  
Sbjct: 56  DDLYKEGANVFVVERE---------IRKYPYIQVVD-SRIAESIIASMFYSKPYEKLITF 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL---TTPSPIYLAKALS 175
            VTGT+GK++       I    G+     G  + ++    D      TTPS I + + + 
Sbjct: 106 GVTGTNGKTTSVHLFHHIMHNFGIKGSISG--TVVNDIMGDKFYHPNTTPSAIEIMRNMH 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G  +  +E SSH L Q+R++ I+      TN+ RDH+D+H+T + Y  AK  +  
Sbjct: 164 KTLENGGKYYGMEVSSHALSQYRVESIRYDIVGITNITRDHLDFHETFENYKKAKFHILN 223

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L P     I   +    +EV  +  N       V     ++       IH   ++T + 
Sbjct: 224 LLKPN---GIAVVNHELLQEVKNKNKNIKLVSFGVDSSSDYV-------IH---EITTNW 270

Query: 296 EGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            G  F    P         L GE+  +N  +       IG D   V+  +     V GRF
Sbjct: 271 SGTFFKLDTPYGEKKVASQLIGEYNAFNITLVVAALAEIGYDIDEVIASVATFRGVDGRF 330

Query: 347 EFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E +    + G  I VD+AHT ++LE ++ ++R +T GR+I VFG GG  D GKRP+MG++
Sbjct: 331 EIIPEAKKLGIEIVVDFAHTPDALEKVILSLRKLTKGRLITVFGAGGQSDIGKRPMMGEV 390

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVL 462
               +DI+I+T D+PR EDP KI  ++  G +PG +     +R EAI TAI + N+ DV+
Sbjct: 391 VSKYSDISIITTDDPRGEDPLKIIKDVEAGLVPGSLSLSIEDRKEAIDTAITLANRGDVI 450

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AG+GHE   +     K    D D+  +I+
Sbjct: 451 LIAGRGHEPYQVFDENHKVPFKDRDVAIDII 481


>gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
 gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
          Length = 534

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 165/522 (31%), Positives = 249/522 (47%), Gaps = 48/522 (9%)

Query: 1   MKLQDLI-------YKDF--PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG 51
           M L+DL+        +DF  PE I   S     W  + +  +S++S+ I+ G +F+ + G
Sbjct: 8   MLLRDLLTGLEASELEDFKLPEAIADHS----HWT-KAVTGLSTNSQAIEPGMVFIGMPG 62

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
            + DG  F   AI +GA A +VS +      S    S+  +L   N  K  +  A+  Y 
Sbjct: 63  TRVDGGEFWQSAIEKGAIAALVSPSVLA---SKPNTSDALVLTTSNIAKVCAELAASFYA 119

Query: 112 KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPI 168
           +  +  NI+ VTGT+GK++    ++     +   +  +G   T    + +    TTP  I
Sbjct: 120 QPAKAMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTLYTRWPGYEKIAVHTTPFSI 179

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L+         V +E SSH L QHR   I      FTNL +DH+DYH+    YF 
Sbjct: 180 DLQAELASAHQAECQTVVMEVSSHALAQHRTWSIPFEVAVFTNLTQDHLDYHKDLDDYFE 239

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  LF     K   AI+   D Y +++++R          +  +   ++   +      
Sbjct: 240 AKALLFSPDYLK-GHAIVNQKDPYGQKLIERIGKHKTLTYDITDRSADLYTSDLRYSPIG 298

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              TI     +  F  PL G+F + N L A G  + +G+    ++  L +   VPGR E 
Sbjct: 299 VSGTIHTPAGNASFSSPLVGQFNLENLLAAVGAALHLGVSLDQIVVALPEFKGVPGRMER 358

Query: 349 VGTNS---------------------RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           V  ++                     +   + VDYAHT +SLE  LK  R    GR+I V
Sbjct: 359 VQISTGMAAQAVVELDTVAEPDTVAEQDISVIVDYAHTPDSLENALKAARPFIEGRLICV 418

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----G 443
           FGCGGDRD+ KRP MG+IA + +D  IVT DNPR+E PE+I  +++ GI G +++    G
Sbjct: 419 FGCGGDRDRSKRPKMGRIAYEQSDFVIVTSDNPRTESPEQILEDVVAGIEGPLDEEQVIG 478

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +R  AIR+AI      D +V+AGKGHE   I+  G +K+  D
Sbjct: 479 DRAAAIRSAILNAQPGDGIVIAGKGHEDYQIL--GTEKIHFD 518


>gi|41408000|ref|NP_960836.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81414074|sp|Q73YQ3|MURE_MYCPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|41396354|gb|AAS04219.1| MurE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 520

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 170/521 (32%), Positives = 248/521 (47%), Gaps = 61/521 (11%)

Query: 11  FPELINQLSIFPMQWRERK-------INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            P L +Q+    M   +R+       +  V+  ++ +  G +F A+ G    G     +A
Sbjct: 18  LPALADQVGAV-MAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I +GA A++  +A   Q    T    TP L+    R  L   A+ +Y  HP   L V G 
Sbjct: 77  IERGAVAVLTDAAGVAQ---LTGGRTTPTLLHPRPRSVLGQLAAAVY-AHPSERLTVIGI 132

Query: 124 SGKSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLS 178
           +G S   +    V+   + +G ++  IG T  I     D  + LTTP    L   L+ ++
Sbjct: 133 TGTSGKTTTTYLVESGLRAAGRTAGLIG-TVGIRIDGADIPSALTTPEAPALQALLAAMA 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q V  V +E SSH L   R+DG +   G FTNL RDH+D+H T   YF AK  LF+   
Sbjct: 192 EQRVDTVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNS 251

Query: 239 P-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P +   A++  DD   +E+  RA +A    ++V  +G+  H + V      +   +   G
Sbjct: 252 PLRAHRAVVCIDDEAGREMAARAGDA----VTVSAEGQPAHWRAV------EVAPLGTGG 301

Query: 298 KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + F  + P          LPG + V N LVA  L  A+G+        L +  V PGR E
Sbjct: 302 QQFTVIDPAGVQHRAGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQTRV-PGRME 360

Query: 348 FVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            +      G+ +   VDYAH   +L  +L +++     R+ VVFG GG+RD GKR  MG 
Sbjct: 361 EIDA----GQDFLALVDYAHKPGALRAVLSSLKRPDR-RLAVVFGAGGERDPGKRAPMGA 415

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNK 458
            A +LAD+ +VTDDNPR EDP  IR EI+ G+         +E G+R  AIR A+     
Sbjct: 416 TAAELADLVVVTDDNPRGEDPAAIRREILAGVTESGCAAEVVEIGDRRAAIRHAVAWAGP 475

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD-----CDIIREILG 494
            DV++VAGKGHET      GE     D      + +RE +G
Sbjct: 476 GDVVLVAGKGHETGQ--RTGEHTRPFDDRVELAEALREAVG 514


>gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
 gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
          Length = 505

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 162/493 (32%), Positives = 239/493 (48%), Gaps = 47/493 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+   F EL    +I         +  V  DSR    G +FVA+ G   DGH ++  
Sbjct: 4   LHDLLSDLFAELRGDDAIM--------VTRVVYDSRQATPGSLFVALRGTHTDGHCYLAD 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A ++GA A VV   +  QD    +R+   I  V +TR  L+  A+R YG HP + L + G
Sbjct: 56  AASRGAVAAVVEE-WPSQDVPG-LRT---IARVSDTRVALAAIAARFYG-HPASDLGLIG 109

Query: 123 TSGKSSVAS---FVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSY 176
            +G     +    +  I + +G  +  IG  +        A D R TTP  + +   L+ 
Sbjct: 110 VTGTDGKTTTTFLIDAILRTAGYRTGLIGTVALRIGDEFVAHDLRQTTPESLDVQAFLAR 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + + GV    VEA+SHGL+ HRLD         TN+ ++H+D+H T + Y  AK RL E 
Sbjct: 170 MRATGVAWAVVEATSHGLELHRLDHCPFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLE- 228

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTIS 294
              ++ P     + AY + ++  A + G R L+   G      +     A+   +   ++
Sbjct: 229 -FVRDRP-----ERAYPRGIVLNADDEGARSLARFAGSVPILWYSATGKAVLVAENARMT 282

Query: 295 VEGKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +G  F         D    L G + V NAL AAG  I +GI    V+  L++L  VPGR
Sbjct: 283 DKGTSFRLRYGDQAADVHLRLFGLWNVENALAAAGTGILLGIPLDQVVTGLQQLAAVPGR 342

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           F  +    +  R+ VDYAHT  S E +L   R++  GR+IVVFG  G+RD+ KR + G I
Sbjct: 343 FTPIDCG-QPFRVIVDYAHTPKSFERVLPLARSLARGRVIVVFGSAGERDRIKRRLQGAI 401

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLN 457
           A  LA+ A+ T ++PR EDP+ I AEI  G           F+   +R  AIR A     
Sbjct: 402 AARLAEFAVFTSEDPRHEDPDAIIAEIAEGAREAGAQEGQQFVCVEDRALAIREAFRRAR 461

Query: 458 KQDVLVVAGKGHE 470
             D++++ GKGHE
Sbjct: 462 PGDIVLLLGKGHE 474


>gi|284991689|ref|YP_003410243.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064934|gb|ADB75872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 523

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 149/432 (34%), Positives = 215/432 (49%), Gaps = 39/432 (9%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P+ VVD+ R  L   A+R+YG+      ++ +TGT+GK++ +  V+     +G  + 
Sbjct: 93  TGLPVCVVDDPRGLLGAVAARVYGEPARRLQVIGITGTNGKTTTSYLVEAGLAAAGRGTG 152

Query: 146 QIGP------------TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +G             T T+++       TTP    L   L+ ++  GV  V +E SSH 
Sbjct: 153 LVGTVETRTRGRAADGTPTVTTLPSVR--TTPEAPALHALLARMADSGVQTVVMEVSSHA 210

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L   R+ GI   A  FTNLGRDH+D+H   + YF AK RLF+     E   ++  DD Y 
Sbjct: 211 LVLGRVGGIPFAAAGFTNLGRDHLDFHTDIEDYFLAKARLFDGRAAVE---VVDVDDPYG 267

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEG-KDFDFLFPLPGE 309
           + +     +   R ++V  QG            A       T+S  G + +     LPG 
Sbjct: 268 RRLAGMLGDR--RAVTVSTQGADADWTATGLGPAPGGGTAFTLSGPGGRSWPARVRLPGA 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTS 366
           F V NA++A  L  A+G+     L  L +  VVPGR E V      G+ +V   DYAHT 
Sbjct: 326 FNVANAVLAVALLDAVGVPVETALTGLAET-VVPGRMEPV----DAGQPFVAVVDYAHTP 380

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++   L  +R  T GR++ V GCGGDRD GKR  MG+ A   +D+ +VTDDNPRSEDP 
Sbjct: 381 DAVATALAALRAATPGRVLTVLGCGGDRDPGKRAAMGEAAARGSDLLVVTDDNPRSEDPA 440

Query: 427 KIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            IRA ++ G+P       +E G+R  AI  A+      D ++VAGKGHET   V      
Sbjct: 441 AIRAAMLAGVPADRRGDVVEVGDRRAAIAEAVARARPGDAVLVAGKGHETGQDVAGTLHP 500

Query: 482 MSVDCDIIREIL 493
              D  ++RE L
Sbjct: 501 FD-DRAVLREAL 511


>gi|187925447|ref|YP_001897089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phytofirmans PsJN]
 gi|187716641|gb|ACD17865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia
           phytofirmans PsJN]
          Length = 515

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 161/476 (33%), Positives = 225/476 (47%), Gaps = 34/476 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPIL 93
           +D+R + AG  F A   +  D   FI  AI +GA A++V      + FS  I  SNT  L
Sbjct: 33  ADTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQP----EGFSGAIDPSNT--L 86

Query: 94  VVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-T 150
            V    +     AS  Y    +++L   VTGT+GK+S + ++       G     IG   
Sbjct: 87  AVPALNELAGSIASGWYNDPSDSMLTLGVTGTNGKTSCSQWISAALTALGTRCAIIGTLG 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           S +         TTP    L ++L+ L   G   V++E SSH L Q R++G       FT
Sbjct: 147 SGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFT 206

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYH T +AY  AK RLF    P    A+I  DDA  + ++        R ++ 
Sbjct: 207 NLTQDHLDYHHTFEAYEAAKARLFA--WPDLRAAVINRDDAAGRRLLASTQGH-ARTIAY 263

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALVAAG 320
           G         K  A+     V  +  G  F          +      G F V N L   G
Sbjct: 264 GLDDTLQDAPKADALLLASNVRATATGTAFHLSTSDWGNAEVEVQTLGAFNVSNLLGVLG 323

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIR- 377
             +A  +     +  L KL  V GR + +G   +     + +DYAHT ++LE  L+ +R 
Sbjct: 324 ALLAADVPFNAAVAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLEALRP 383

Query: 378 --TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             T   G +I +FGCGGDRD  KRP+MG IA  +AD  +VT DNPRSEDP+ I  +I  G
Sbjct: 384 MATARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQAIIEQIAAG 443

Query: 436 IPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +     K  RIE    AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 444 MKD-ASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 497


>gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 505

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 228/466 (48%), Gaps = 42/466 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I E+S DSR +  G +F  + G K  G  F   A  +GA A++ S    + D +   
Sbjct: 30  ENEILEISIDSRQVGEGALFCCLEGTKRKGVEFAQDAQRRGAVAVLTSE--RVDDLA--- 84

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSS 144
               P L+V +  +   L ++ LYG     +L   VTGT+GKS+    ++ I     +  
Sbjct: 85  ---IPQLIVKDAGEACGLASAYLYGLPTSKLLMIGVTGTNGKSTTTYLIKSILDTGDMKC 141

Query: 145 FQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG          +D   TTP    +   L+ +         +EASSHG++Q R+ G  
Sbjct: 142 GLIGTIVYNDGKSHEDADRTTPQAPLIQSLLNKMVDNRCHACVMEASSHGIEQKRIFGCL 201

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL  +H+DYH   + YF AK  LF + +  +  A I  DD Y +++   A+  
Sbjct: 202 YDRAVFTNLTPEHLDYHGDMENYFCAKRDLFIKYMRGDWKASINTDDPYGEKI---ANEF 258

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LP--GEFQV 312
              VL    + K  +     A +   + + S+ G   D  FP         LP  GE+ V
Sbjct: 259 APHVLGFSLRQKADN-----AFYGSIRRS-SIRGIIMDISFPDGSTLENVTLPLLGEYNV 312

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLE 370
            NAL A+ +  ++  D+ ++ + LE    VPGR E  FV     G    +DYAHT ++LE
Sbjct: 313 LNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFV---EDGPVCIIDYAHTPDALE 369

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L  ++ + SGR+ +VFG GG+R +  RPI+G IA   AD  +VT DNPRSEDP  I  
Sbjct: 370 KVLSTVKPLCSGRVWLVFGHGGERFKENRPILGSIAARFADCIVVTMDNPRSEDPRDIAL 429

Query: 431 EIIHGI---PGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +I  GI   PG  E     +R EA+  A++   K DV++V GKG E
Sbjct: 430 QIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTGKGPE 475


>gi|222099423|ref|YP_002533991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571813|gb|ACM22625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 490

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 149/483 (30%), Positives = 244/483 (50%), Gaps = 45/483 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ +S+ +  ++ G +F+   G K D H  IP+ I +GA A+VV    +          
Sbjct: 24  EISGISNHTSRVKKGDLFICRKGEKFDSHEIIPEVIEKGAVAVVVEREVNF--------- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V ++R F +  AS  +    ++ L    T       + +      + +      
Sbjct: 75  DAPSILVFDSRYFEAKLASLFFEDPWKDTLTFGITGTNGKTTTTLMIYHMLTSMGVKGSA 134

Query: 149 PTSTIS-----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            T+ +      ++ +D  +TTP  I +  A+      G    ++E SSH L Q R++G++
Sbjct: 135 LTTVLKNVLGKTYYED--ITTPDAITVLSAMKENKDGGGRFFALEVSSHALVQKRVEGVR 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTN+ RDH+D+H T + Y  AK+ LF+ LL  +  A++        E +  A + 
Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGFAVL-------NESLSDALHR 244

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314
             R ++ G            A +    + +S EG  F    P           G+F  YN
Sbjct: 245 RVRKVTFGTSRN--------ANYRLGNIEVSWEGTSFVLETPDGFLKVFTRAIGDFNAYN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMIL 373
           A  A      +G D   + E LE    V GRFE V    + G  + VD+AH+ ++LE +L
Sbjct: 297 AAAAIAALHQLGFDPKELAESLESFTGVEGRFEVVKAAKKSGFNVIVDFAHSPDALEKLL 356

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           KN+R I+ GR+IVVFG GG+ D+GKRP+M ++  +LAD+ I+T D+PR EDPE+I  ++I
Sbjct: 357 KNVRKISKGRVIVVFGAGGNSDRGKRPMMSRVVSELADVMILTTDDPRGEDPEQIMEDLI 416

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G+     ++   +R EAI TA+ + N+ D +VVAG+GHE   I+ + +K    D ++I 
Sbjct: 417 KGVDKNKPYLVLFDRKEAIETALTIANRGDTVVVAGRGHERYQIIDDEKKIPFHDREVIE 476

Query: 491 EIL 493
           EIL
Sbjct: 477 EIL 479


>gi|89255900|ref|YP_513262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156501883|ref|YP_001427948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009665|ref|ZP_02274596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FSC200]
 gi|254368738|ref|ZP_04984751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953388|ref|ZP_06558009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|295313392|ref|ZP_06804000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|89143731|emb|CAJ78930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156252486|gb|ABU60992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157121659|gb|EDO65829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 487

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 252/494 (51%), Gaps = 27/494 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
            ++V++ ++  +D          +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  -SLVLTDSHEFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K ++  +  G+   ++  
Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFN--GRFVGEYTT 287

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E
Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE  ++  NG K
Sbjct: 404 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHE-CYLDKNGAK 462

Query: 481 KMSVDCDIIREILG 494
           +   + +II++  G
Sbjct: 463 EYFDEREIIKKYAG 476


>gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Bacillus sp. m3-13]
          Length = 496

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/486 (31%), Positives = 243/486 (50%), Gaps = 46/486 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +Y DFP     LS+          + + SDSR +    +FV I G   DGH +I  AI +
Sbjct: 15  VYGDFP-----LSV----------SNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEK 59

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGT 123
           GA  IVV      QD    +      + V +T + L   A+  +   P     I+ VTGT
Sbjct: 60  GASVIVV------QDMPEQLVEGICYVHVRDTERALGQLANAFF-DFPSTKLRIVGVTGT 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYLAKALSYL 177
           +GK++V+S +  + ++ G   ++ G + TI        F   N  TT   + + + L  +
Sbjct: 113 NGKTTVSSVINNVMRKEG---YKTGLSGTIEIDIDGEKFESKN--TTSDVLTMQRMLKDM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GVT V +E SSHGL   RL G++   G FTNL +DH+D+H T + Y NAK  LF +L
Sbjct: 168 VEAGVTDVVMEVSSHGLVLGRLAGVEFQNGVFTNLTQDHLDFHGTMENYKNAKGLLFAQL 227

Query: 238 ---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
              + K+  AI+  DDA +K+ ++     G R+++ G + +     +++    NK    +
Sbjct: 228 GQDMRKDKAAILNVDDAATKDYVQMT---GARIITYGIKNEADFKAREIQFFENKTSFVL 284

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +F+   P  GEF VYN L    +    G+    +L HL +     GR + + T  
Sbjct: 285 ETNFGEFELEIPFVGEFNVYNILSVICVLWDKGMPFERILNHLRETTPPSGRMQTLETGD 344

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   I +DYAHT +++   L +IR  +  +II + G GG RD+ KRP MG+IA + ++  
Sbjct: 345 KRNVI-IDYAHTEDAIGKALDSIRMFSKHKIISIIGTGGGRDKDKRPKMGRIATEKSEYV 403

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNP  E  E+I   +  G     F    +R +AI  A+E+  + DV+++AGKGHE 
Sbjct: 404 IFTTDNPLDEPGEEIVQGMAEGAVHENFECIPDREQAIIRAVEIAGEGDVILIAGKGHEN 463

Query: 472 VHIVTN 477
             ++ N
Sbjct: 464 YQLIGN 469


>gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella cf. novicida Fx1]
          Length = 487

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 250/494 (50%), Gaps = 27/494 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++  S    Q+F    R    +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  SLVLTDS----QEFEDQKR----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYY--KNYRNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K ++  +  G+   ++  
Sbjct: 230 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFN--GRFVGEYTT 287

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E
Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDISKRPIMAQIAEEYASKIVITEDNNRFE 403

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E I ++I  G       I   +R +AIR +IE  N+ D++++AGKGHE  ++  NG K
Sbjct: 404 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 462

Query: 481 KMSVDCDIIREILG 494
           +   + +II++  G
Sbjct: 463 EYFDEREIIKKYAG 476


>gi|115314388|ref|YP_763111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|115129287|gb|ABI82474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
          Length = 492

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 252/494 (51%), Gaps = 27/494 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 7   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
            ++V++ ++  +D          +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 67  -SLVLTDSHEFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY   +   ++ 
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K ++  +  G+   ++  
Sbjct: 235 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFN--GRFVGEYTT 292

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 293 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E
Sbjct: 349 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 408

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE  ++  NG K
Sbjct: 409 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHE-CYLDKNGAK 467

Query: 481 KMSVDCDIIREILG 494
           +   + +II++  G
Sbjct: 468 EYFDEREIIKKYAG 481


>gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
 gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
          Length = 508

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 150/484 (30%), Positives = 243/484 (50%), Gaps = 20/484 (4%)

Query: 9   KDFPELINQLSI-----FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           K F ELI    +        +    +I   + DSR I+  ++FVAI G K+DGH +I  A
Sbjct: 2   KYFKELIKNYKVSKESQLTKECLNTEIKGAAYDSRLIKKNYLFVAIKGLKDDGHKYIESA 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSN---TPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           I   A +I++    + ++F   ++ N      + V N R+ L+  +++L+ +  +  N +
Sbjct: 62  INNKA-SIIIYDNTADKEFIKKLQDNHKDVHFVAVKNPRECLAYISAKLFYEPTKKINTI 120

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ + + +   +  IG   + I        LTTP  I L       
Sbjct: 121 GITGTNGKTTTTYLLKSVLEANKNKTTLIGTIKNMIGKTEIKTNLTTPESIDLESIFDKS 180

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G++H+ +E+SS  L  +R D +      FTN+  DH+DYH   Q Y  AK++LF  L
Sbjct: 181 LKKGISHIVMESSSQALAMNRCDYLNYDTAIFTNITEDHLDYHVDMQNYLKAKLKLFSLL 240

Query: 238 LPKESP---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTI 293
                    AI+  D    K++       G ++++ G   K  +  KV ++++K  +   
Sbjct: 241 KESSKKKKLAIVNIDTDNFKQISNYIKKLGIKMVTYGINEKADYYGKVISLNSKNTEYEF 300

Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +GK    +   + G F + N+L          +D    ++ + K+ V  GRFE V   
Sbjct: 301 YAKGKLISKVKLSMLGRFNILNSLSILAYVCENKLDIEKSIKAMRKVQV-EGRFEIVTKE 359

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDY+HT +SLE IL   + +   R+I VFGCGGDRD+ KRPIM +IA   ADI
Sbjct: 360 KHPFIVAVDYSHTPDSLENILVEAKKLNPNRVIAVFGCGGDRDRKKRPIMAEIAEKYADI 419

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI+T DN R+ED  +I  +I  G      K   +R EAI  A++   + D++++AGKGHE
Sbjct: 420 AILTTDNQRTEDINQIMNDIEKGFKNNNYKKIIDRKEAIFEAVKEAKENDIIIIAGKGHE 479

Query: 471 TVHI 474
           T  I
Sbjct: 480 TYQI 483


>gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
 gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
          Length = 499

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 224/460 (48%), Gaps = 19/460 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FS 83
           +  N+++ DSR I+ G +F+A+ G+K DG  FI +A+  GA A++V +  + Q      S
Sbjct: 18  QSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHS 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138
                   I     +R+  ++ A R    H        ++ +TGT+GK+S +  + Q+  
Sbjct: 78  DNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  +  +G     +     D+  TT   I L + L    +QG +  ++E SSHGL Q 
Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+D +      FTNL RDH+DYH   ++Y  AK  LF          ++  DDA     +
Sbjct: 198 RVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FNTLGHGLLNLDDAVGASWL 255

Query: 258 KRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
               +   ++      G+Q    + K           T+     + +   PL G F + N
Sbjct: 256 TELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVWPEDETEIHSPLLGAFNLSN 315

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G D   + E ++ L  V GR E   T +    + VDYAHT +++E  L 
Sbjct: 316 LLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTANNITLVVDYAHTPDAIEQALN 374

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R   +G +  VFGCGGDRD+GKRP+MGK A   AD  +VT DN RSEDP +I  +II 
Sbjct: 375 ALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQYADRIMVTSDNARSEDPAQIITDIIQ 434

Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G+      + + +RI AI+  + +    DV+++AGKGHET
Sbjct: 435 GLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474


>gi|212712752|ref|ZP_03320880.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
 gi|212684668|gb|EEB44196.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
          Length = 495

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 157/496 (31%), Positives = 238/496 (47%), Gaps = 20/496 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   L+ F +      + E++ DSR   AG +F+A+ G++ DG  +IPQAIAQG  A++ 
Sbjct: 6   LCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVSAVIA 65

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +    ++         P++ +++    LS  A   Y   P + + + G +G +   +  
Sbjct: 66  EAHGEAEEGEIRFVHGVPVIYLNDLNNRLSALAGEFY-HQPSSQMKLVGVTGTNGKTTTT 124

Query: 134 QQICQRS---GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           Q I Q +   G +S  +G     I      +  TT S + +   L+ L ++  T  ++E 
Sbjct: 125 QLIAQWAKGLGETSAVMGTVGNGILGHVSPSENTTGSAVDIQLELTQLLNKKATLTAMEV 184

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL Q R+  ++  A  FTNL RDH+DYH     Y  AK  LF     K    II AD
Sbjct: 185 SSHGLVQGRVAALQFDAAVFTNLSRDHLDYHGDMANYEAAKWLLFSTHHTKTQ--IINAD 242

Query: 250 DAYSKEVMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           D    + ++R   A C V     +   +QG ++    V        +  +    +  F  
Sbjct: 243 DEVGLKWLQRLPQA-CAVTMEDSIPANWQGPWLKTTDVDYHDKGATIHFASTWGNGSFES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N L+A    + +      +L     L  V GR E      +   + VDYAH
Sbjct: 302 PLMGAFNVSNLLLAMATLLMMDYPLEKLLATTNALMPVCGRMEVFSVTGKP-TVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  VFGCGGDRD+GKRP+MG  A   AD  ++TDDNPRSED
Sbjct: 361 TPDALEKALAAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNPRSED 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ GI      +    R EA+   I   +  DV++VAGKGHE   I+  G ++
Sbjct: 421 PLDIINDIMAGILDSSRVLAIPGRPEAVTNTILQAHPDDVILVAGKGHEDYQII--GSRR 478

Query: 482 MSV-DCDIIREILGLI 496
           +   D   +  +LG++
Sbjct: 479 LDYSDRLTVARLLGVM 494


>gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 513

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 254/514 (49%), Gaps = 45/514 (8%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +S DSR   A   F+A+ G+  DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAKGT 61

Query: 69  EAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTS 124
           + I+   +    S+   S      + I  V+N ++ LS  A   Y  K P+NI+ +TGT+
Sbjct: 62  KLILSDKLPRQSSIATPSVAEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTN 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S++S++ Q+ +     S  +G     I    Q++  TT   + L + +S    +   
Sbjct: 122 GKTSISSYIAQLQKLLDQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTIS--DYENYQ 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++ +E SSH LDQ R +G+      F+NL  DH+DYH+T   YF AK +LF+        
Sbjct: 180 NLVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKNLKK 237

Query: 244 AIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKF-IHLKKVCAIHNKQQVTI---SV 295
           A+I  DD Y +++ +  + +  R      S+    K+ I +  V     K  + I   S+
Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKSI 297

Query: 296 EG--KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSAL---VLEHLEKLH 340
           E     FD              L GEF + N     GL +A   DS+    +LE++ KL 
Sbjct: 298 ENMQTSFDLYISQKHIGTYQTSLVGEFNLMNL----GLSLAALDDSSTRDQLLENISKLK 353

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR E +     G +I +DYAHT ++LE  L+ +       +  +FGCGG+RD  KRP
Sbjct: 354 PVKGRMEVIAL-VNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTKRP 412

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEM 455
           IM +IA   A+  +VT+DN R E  E I  +I  G        FI+  +R +AI+  IE 
Sbjct: 413 IMAQIAEKYANKIVVTEDNNRFESIESIFEDIKKGFSHPDKRNFID--SREKAIKYTIEN 470

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
               DV+++AGKGHE  ++  NG K+   + ++I
Sbjct: 471 SKANDVILLAGKGHE-CYLDKNGIKEYFDEREVI 503


>gi|183221146|ref|YP_001839142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911237|ref|YP_001962792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775913|gb|ABZ94214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779568|gb|ABZ97866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 508

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 237/476 (49%), Gaps = 32/476 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS----AYSLQDFSATIRS 88
           + +DSR ++   +FV      E    ++  A  +G + ++VS       +L  F   + S
Sbjct: 27  IWADSRKLKPNDVFVLPEDKAETIESYLQMAYDKGVKVVLVSKRNLKLKNLDLFPTILES 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +  V          AS+L G   +   I+ +TGT+GK+S+   +  I ++       
Sbjct: 87  EDALGDVHGK------MASQLLGNPSKKLKIIGITGTNGKTSLTFILFHIAKKLKKKVAL 140

Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I     ++  TTP    L   L  +  +GV +V +E SSHGL   R+ GI++ 
Sbjct: 141 IGTVQIQILDRILESGYTTPDASSLNLLLREMLDEGVEYVFMEISSHGLKLGRVAGIEIT 200

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLF---EELLPKESPAIIYADDAYSKEVMKRAHN 262
              FTNL +DH+D+H++ + YF +K ++F   E+   K    ++  D ++   +++R   
Sbjct: 201 CAGFTNLTQDHLDFHESMEDYFESKFKIFQLLEQSSVKNKFGLVAGDVSFGDRMIQRIRE 260

Query: 263 AGCR--VLSVGYQGKFIH-------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  +  +  +G  G+F +       L      H K++    +E +       L G F V+
Sbjct: 261 SKLKTPIYILGKSGEFHYSNTKLSLLGSEYRFHKKEKNLPFIEVRSIRT--NLLGNFNVF 318

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N   A  +   +G     V+  +E++  VPGRF+ +    +     VDYAHT ++LE IL
Sbjct: 319 NTAFAMSIAYELGFPWDEVVTAIEEIPTVPGRFQVIPYPDKTRIAVVDYAHTPDALENIL 378

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K+   I   ++I +FGCGGDRD+ KRP M KIA  LAD   +T DNPR+EDPE I  EI 
Sbjct: 379 KSCVEIRPKQLICLFGCGGDRDRTKRPQMAKIAETLADFVFLTSDNPRTEDPESILDEIE 438

Query: 434 HGIP-GF--IEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G   GF   EK  +R  AI+ A+ +L K  +LVVAGKGHET  I+   EK   VD
Sbjct: 439 SGFSRGFKRYEKITDRRVAIQRAVSLLEKDGILVVAGKGHETYQII-GKEKTNFVD 493


>gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 494

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 238/472 (50%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  LY    H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++      C V S G   +   + K     N Q+   S++G  FDF+ P         
Sbjct: 246 EYLRTV--TPCEVFSYGIDEEAQFMAK-----NIQE---SLQGVSFDFVTPFGTYSVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6578]
          Length = 496

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 152/471 (32%), Positives = 231/471 (49%), Gaps = 45/471 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR +++G +F A+ G   DGH F+  A+ +GA A+V            + R     
Sbjct: 21  LAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVVHERELP------SYREGVVY 74

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L V N R+ LS  ++  YG HP     ++ VTGT GKSS   F+ Q+ + SG+    I  
Sbjct: 75  LRVKNARRALSAASAVFYG-HPSQDLEVIGVTGTDGKSSTTYFIYQLLRASGVKVGCIS- 132

Query: 150 TSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDGIK 203
           T+  S+  +      R +TP   ++  AL+ +   G TH  VEA+SHGL     RL+ ++
Sbjct: 133 TALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATSHGLSPRTARLEDVR 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN+  +H+++H + + Y   K RLF  L P+E  A++  DD  S  + +R   A
Sbjct: 193 FTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGL-PEEGKAVLNLDDPSSGFLAERT-RA 250

Query: 264 GCRVLSVGYQGKFIHLKKV---------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           G     +G +       +V         C +H ++ + + V         P PG F V N
Sbjct: 251 GVWGYGLGAREGARLWAEVREESLAGSRCLVHGRETLEVWV---------PFPGRFNVEN 301

Query: 315 ALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            L A     A    +    L H+  L  VPGR E V    +   + VDYAHT  + E +L
Sbjct: 302 VLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQPFLVLVDYAHTPGAFEKLL 360

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R    GR+IVVFG  G+RD+ KRP+ G++A   A++ ++TD++PR ED   I  EI 
Sbjct: 361 PFVRRFVEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVLTDEDPRGEDRMAILREIA 420

Query: 434 HGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            G  G +E        +R EAI  A+ M  + D ++  GKGHE   +   G
Sbjct: 421 AGCEGLMEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKGHERSIVTAEG 471


>gi|317508858|ref|ZP_07966497.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
 gi|316252819|gb|EFV12250.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
          Length = 522

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 161/483 (33%), Positives = 238/483 (49%), Gaps = 32/483 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--LQDFSATI 86
           +++ V+  ++  Q G +FVA+ G K  G  + P A A+GA A++  +A +  L+D     
Sbjct: 36  RVSGVTQSAQTAQPGDLFVALPGAKTHGAKYAPLAKARGAVAVLTDAAGAALLEDVG--- 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144
                +L     R  L   ++ +YG     +  V  T       +   ++ + Q +G  +
Sbjct: 93  --EIAVLTAATPRSSLGALSALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFQAAGRMT 150

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   T I S +  +  TTP        L+ ++  GV  V +E SSH LD  R+DG +
Sbjct: 151 GVIGTVETRIGSTSLASSFTTPEAPATQALLAVMAEAGVGAVLMEVSSHALDFGRVDGTR 210

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAY-------SKE 255
             A  FTNL +DH+D+H   ++YF AK +LFE   P     A++  DDA+       ++E
Sbjct: 211 FAAAGFTNLSQDHLDHHGDMESYFQAKAKLFEPGSPVAAGRAVVCVDDAWGERMSQVARE 270

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYN 314
              R   A   V + G +  +  L +    H  Q+V +    G+   F   L G     N
Sbjct: 271 GAGRGAQAPVTVATSGARADWTVLDRQEDDHGAQEVVVRDPRGQKLRFRLNLLGRHNAAN 330

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEM 371
           AL+A GL  A G++    L        VPGR E V      G+ +   VDYAH   +L  
Sbjct: 331 ALLALGLAEAAGLEVGPELLRGWASISVPGRLERVDA----GQDFLAVVDYAHKPEALVK 386

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +R  T GRI VV G GGDRDQGKRPIMG+     A++ +VTDDNPR+EDP  IRA+
Sbjct: 387 VLHALREHTEGRIAVVVGAGGDRDQGKRPIMGEACALGAELVVVTDDNPRTEDPAVIRAQ 446

Query: 432 IIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++ G          E G+R EAI  A+      D ++VAGKGHET   + NG K+   D 
Sbjct: 447 VLAGAQESGRAEVWEVGDRAEAIARAVGWARAGDTVLVAGKGHETYQEI-NGVKQPFDDR 505

Query: 487 DII 489
           +++
Sbjct: 506 EVL 508


>gi|296166028|ref|ZP_06848478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898618|gb|EFG78174.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 516

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 227/459 (49%), Gaps = 25/459 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+  ++ ++ G +F A+ G+   G  +  +AI +GA A V++ A  + +  A+  S 
Sbjct: 38  VTGVTLRAQDVRPGDLFAALPGSSTHGARYAAEAIERGAVA-VLTDAAGVAEMGASA-SA 95

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P LV    R  L   A+ +YG   E   ++ +TGTSGK++    V+   + +G ++  I
Sbjct: 96  VPTLVHPAPRGVLGALAATVYGNPSERTTVIGITGTSGKTTTTYLVEAGLRAAGRTAGLI 155

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I      + LTTP    L    + ++ +GV  V +E SSH L   R+DG     
Sbjct: 156 GTVGIRIDGADVPSALTTPEAPALQALFAAMAERGVDTVVMEVSSHALALGRVDGTGFAV 215

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGC 265
           G+FTNL RDH+D+H T   YF AK +LF+   P +    ++  DD   + +  RA   G 
Sbjct: 216 GAFTNLSRDHLDFHPTMADYFEAKAKLFDPASPLRARRVVVCVDDEAGRAMAMRAMQGGA 275

Query: 266 RVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             ++V    +  H + +  I      +Q   I   G        LPG + V N LVA  +
Sbjct: 276 AAITVSAADQPAHWRAMDVIPLGTGGQQFTAIDPAGVRHRVGIRLPGHYNVANCLVALAI 335

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRT 378
             A+G+        L    V PGR E +      G+ +   VDYAH   +L  +L ++  
Sbjct: 336 LDAVGVSPEQAAPGLLDTRV-PGRMEEIDC----GQDFLALVDYAHKPGALRAVLTSL-A 389

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
               R+ VVFG GG+RD GKR  MG  A +LAD+ +VTDDNPR EDP  IR EI+ G   
Sbjct: 390 RPGRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGEDPAAIRREILAGAAA 449

Query: 439 ------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                  +E G+R  AI  A+      DV++VAGKGHET
Sbjct: 450 GGGAAEVVEIGDRRAAIEHAVAWARPGDVVLVAGKGHET 488


>gi|313637026|gb|EFS02597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL S4-171]
          Length = 440

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 205/405 (50%), Gaps = 32/405 (7%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P++ V +T++ +++ A+  YG   +   ++ +TGT+GK++V+  V+QI + SG  +  IG
Sbjct: 24  PVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRESGEQTGLIG 83

Query: 149 PT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                I     + + TTP  + L +    +  +GV+   +E SSH L Q R+ G      
Sbjct: 84  TMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVSSHALVQGRVYGSDYDVA 143

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRAHN 262
            F NL +DH+DYH T + Y  AK  LF +L       +P  A++ ADD   +E ++    
Sbjct: 144 VFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKIAVLNADD---EESVRMQTA 200

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVY 313
               V++ G         K  A      + I+  G  F+   P         + G F VY
Sbjct: 201 TAAHVITFGI--------KENADFRATNIEITSHGSTFNLTTPAGKFKLKIKMIGNFSVY 252

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A     A+ I     +  +E +  V GRFE V    +   + VDY+HT + L  +L
Sbjct: 253 NVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNA-GQDFPVIVDYSHTPDGLLNVL 311

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + I    + R+ VV GCGGDRD+GKRP M KIA+  A   + T DNPRSE+P  I  ++I
Sbjct: 312 QTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYATNPVFTSDNPRSENPRTIIEDMI 371

Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            G+P    ++   NR +AI+ AI      DV+++AGKGHE   I+
Sbjct: 372 KGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGHEDYQII 416


>gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
 gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
          Length = 518

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 159/522 (30%), Positives = 257/522 (49%), Gaps = 47/522 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +++K     + Q+   P    E +I  ++ +S+  +   +FV I G++ DGH +I
Sbjct: 1   MKL-SVLFKRIQHAVIQM---PELEEEMEIRGITCNSQKAEEDSLFVCIQGSRADGHDYI 56

Query: 61  PQAIAQGAEAIVVSSAYS---LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            +A   GA  I++    S   +  F      N  +++V +TR+ L+   SR++   P + 
Sbjct: 57  EEACNLGASCILIEKLVSGGRMLKFP----ENVAVVLVKDTREALAGI-SRIWFGSPADK 111

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
             ++ VTGT GKS+VA  ++++ +  G     IG  +  + +    ++ TTP    +   
Sbjct: 112 LKVIGVTGTKGKSTVAVMIREMLESLGQKCGLIGTIAHHLGNEVVTSQNTTPDAFTIQSY 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
            + +   G  +  +E SS G+ QHR+DGI      FTN G DHI    H +   Y   K 
Sbjct: 172 FAKMVEAGCHYAVMEVSSQGIKQHRIDGIWFEIAVFTNFGEDHIGPGEHASLGEYRYYKS 231

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRA----HNAGCRVLSVGYQG----KFIHLKKVC 283
            LFE+        I   DDA    + +R     +   CR      +G      +  +K+ 
Sbjct: 232 CLFEQC----RIGIGNLDDAQCSYMFQRKCCTKYGFTCREEEGQERGFRNSHVLTAEKIS 287

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLH 340
            +    ++       D  +   LPG+F VYNAL A      +G +   +  VL+HL    
Sbjct: 288 FLMEGGELKTVFYADDRKYELALPGKFNVYNALAALQTVSCLGFEREEAGDVLKHL---- 343

Query: 341 VVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           VV GR E V  G N      Y+DYAH + SL  +LK +R     RI++VFGCGG+R   +
Sbjct: 344 VVRGRMERVDAGENIL---CYIDYAHNAMSLAKVLKMLRIYEPERILLVFGCGGNRAGSR 400

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIE 454
           R  MG++A +LA++ I+T DNPR E+P KI A++  GI      +    +R EA+  A+E
Sbjct: 401 RSGMGRVAGELANLTIITSDNPRWEEPAKIMADVEEGIKETSGAYRMIQDREEAVLFAVE 460

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           M  + D+L++AGKGHE    +      M  D +++R+ + L+
Sbjct: 461 MARQGDILLIAGKGHENYQEIQGVRYPMD-DRELVRKAVRLV 501


>gi|288919048|ref|ZP_06413389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
 gi|288349588|gb|EFC83824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
          Length = 527

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 239/461 (51%), Gaps = 34/461 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR- 87
           ++  V+ DSR +  G ++ A+ G    G  F          A+   +   L D S   R 
Sbjct: 58  RVTGVTHDSRAVIPGDLYAALPGANVHGADFA-------VGAVAAGAVAVLTDPSGAARL 110

Query: 88  ---SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSG 141
                 P+LV D+ R+ L+  A+ +YG HP     +L VTGT+GK++ A  +    + +G
Sbjct: 111 AGRVAVPVLVTDDPRRDLAPVAAWVYG-HPSQALTLLGVTGTNGKTTTAFLLDAGLRAAG 169

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++  +G   T I      +  TTP    L    + +  +GVT   +E SSH L QHR+D
Sbjct: 170 HTTGLLGTVQTRIGGTVVPSVRTTPESSDLQALFATMVERGVTAAVMEVSSHALAQHRVD 229

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++    +FTNL +DH+D+H T + YF AK  LFE    K+  A+I  DD + + + ++ 
Sbjct: 230 ALRFTGAAFTNLSQDHLDFHPTMEDYFAAKATLFEAGRSKD--AVICVDDDWGRRLARQR 287

Query: 261 HNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +A  R  SV G    +     V          +  +G   D    LPG F + NAL A 
Sbjct: 288 PDA--RTYSVTGADADWWPEDVVAGPAGTVCRVLGPDGAKADLSVTLPGRFNLANALGAL 345

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNI 376
            L  A G+   +  E +  L  VPGR E V     GG+ +   VD+AHT +++  +L+ +
Sbjct: 346 ALLAATGVPLEVAAEGISSLTGVPGRMERV----DGGQPFLAVVDFAHTPDAVVTLLEAV 401

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R + +GR+IVV GCGGDRD+GKRP+MG  A  LAD+A+ T+DNPRSEDP  I  +I+ G 
Sbjct: 402 RPLVTGRVIVVLGCGGDRDRGKRPLMGAAAARLADLAVFTNDNPRSEDPAVILDQIVAGA 461

Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             + G   F+ + +R  AI  A+      D +VVAGKGHET
Sbjct: 462 REVAGAGRFVVEPDRAAAIALAVAAAGPADAVVVAGKGHET 502


>gi|108800227|ref|YP_640424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119869355|ref|YP_939307.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
 gi|108770646|gb|ABG09368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119695444|gb|ABL92517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
          Length = 508

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/398 (37%), Positives = 205/398 (51%), Gaps = 26/398 (6%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQI 147
           P+LV  + R  L   AS +YG HP   L V G +G S   +    V+   + +G  +  I
Sbjct: 95  PVLVHPDPRAVLGAVASTVYG-HPSQHLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLI 153

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I    Q + LTTP    L   L+ +  QGV  V +E SSH L   R+DG+   A
Sbjct: 154 GTVGIRIDGRDQPSALTTPEAPDLQALLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAA 213

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           G FTNL RDH+D+H T + YF+AK  LF+ +   +   A++  DD   + +  RA     
Sbjct: 214 GGFTNLSRDHLDFHPTMEDYFDAKAGLFDPQSRTRAELAVVCVDDDAGRAMAIRA----G 269

Query: 266 RVLSVGYQGKFIHLK--KVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGL 321
           R ++V   G+    +   V A+    Q  ++V+  G        LPG + V N ++AA L
Sbjct: 270 RAVTVSASGRPADWRAEDVRAVEAGAQEFVAVDPAGVHHGLRIALPGHYNVANCVLAAAL 329

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTI 379
             A+ +        L +   VPGR E V    RG      VDYAH   +L  +L+ +R  
Sbjct: 330 LDAVDVSPEQAAPGL-RTATVPGRLEAV---DRGQDFLALVDYAHKPGALRAVLETLRGQ 385

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GRI VVFG GG+RD GKR  MG++A +LAD+ +VTDDNPR EDP  IRA I+ G    
Sbjct: 386 GKGRIAVVFGAGGNRDAGKREPMGRVAAELADLVVVTDDNPRDEDPATIRAAIMAGARAA 445

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 +E G+R EAI  A+      DV++VAGKGHET
Sbjct: 446 GGGADVVEIGDRREAIAHAVRWARPGDVVLVAGKGHET 483


>gi|282862740|ref|ZP_06271801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282562426|gb|EFB67967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 490

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 234/475 (49%), Gaps = 32/475 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+  +  G +F+A+ G+ E G   +  A+A+GA A++V +   L    A  R    + V 
Sbjct: 31  DADRVTPGSLFIAVPGHVEGGPGAVAPALARGAAAVMVDADCVL---PAAARDACVVRVA 87

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           D TR   +L  +R +G+     +++A+TGT+GK+SV+  V+ + + S     + G   T 
Sbjct: 88  D-TRTAAALVTARYFGEPGRQMDVVAITGTNGKTSVSYMVESVLRIS--EGTRAGVIGTA 144

Query: 154 SSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            S   D         LTTP    L   L  +  +GV  V +EA+S GL  HR+D   +  
Sbjct: 145 GSRIGDEPIPMPPSVLTTPETPDLQYLLGCMRDRGVRSVVLEATSMGLLTHRVDRTFVDV 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL +DH+D H T + Y +AK+RLF+ L      A++  DD     +      A   
Sbjct: 205 GVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCRH---AVVNVDDPVGAGIQAMMPGA-VT 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++  +  +     +       + T+  EG+ +    P PG F V NAL     C  +G
Sbjct: 261 TYALDAEADY-RATDLVVDAAGSRFTLHHEGRKYPAAIPSPGRFSVANALATVAACHVLG 319

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D   ++  LE++  +PGRFE + T + G  + VDYAH+ +SL  +L  +R    GR++ 
Sbjct: 320 HDLTGLVAALERMPQIPGRFERL-TTAAGTSVIVDYAHSPDSLNKVLGTVRGFARGRVVT 378

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRD  KR  MG IA   +D+ ++T DNPR EDPE I  ++    PG    G   
Sbjct: 379 VFGCGGDRDTTKRAEMGTIAGTHSDLCVLTSDNPRHEDPEDIMDQV---APGIAVTGTPY 435

Query: 447 EAI-------RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           E I         A+      D++++AGKG E    V +     S D   +RE+ G
Sbjct: 436 ERIADRHAAIAFALSAAGPDDIILIAGKGSEPHQTVGDTLIPFS-DMATVRELTG 489


>gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
 gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
          Length = 491

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 235/464 (50%), Gaps = 32/464 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR I+   +FVA+ G + DG  FI +AI QGA  ++  + +S +     + + 
Sbjct: 20  VQGMSLDSREIKKNGLFVALQGAQLDGRSFIEKAIHQGACVVLSETMHSAEHGDIKMHAQ 79

Query: 90  TPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++V      +S  A + Y   K+   ++ +TGT+GK+++AS +    Q   + + Q+
Sbjct: 80  VAEILVFKLPYLISQIAYQFYFPKKNLHKVIGITGTNGKTTIASLLANALQLLDVKNAQM 139

Query: 148 GPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           G       F Q   +  TT   I +   L+    QG  +  +E SSHGLD  R+  +   
Sbjct: 140 GTIGN-GLFGQLKSSLNTTLDAISIFAELASYQQQGAQYTLMEVSSHGLDLGRVQALPFY 198

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           +  FTNL RDH+D+H T   Y  AK RLF E   ++   II  DD   +  +    +A  
Sbjct: 199 SAIFTNLTRDHLDHHGTMACYGLAKKRLFSEYSLQQR--IINIDDPTGEMWLSEFSDA-- 254

Query: 266 RVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAG 320
             +S G    Q ++  +K++   + KQ +  + +    D     P  G F V N  ++A 
Sbjct: 255 --ISYGKATNQKQYFTVKEI--FYQKQGICFNFQSSWGDGQISAPFYGHFNVQN--LSAV 308

Query: 321 LC--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           LC  +A G     + +   KL+ VPGR E    + +     VDYAHT ++LE  L+ +  
Sbjct: 309 LCQLLAEGFSITQLKKVFLKLNTVPGRMEQYYFSKQDITFVVDYAHTPDALEKALQALHQ 368

Query: 379 ITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +  G +I +FGCGGDRD GKRP M K+A  LA   I+ DDNPR+E    I  +I   + 
Sbjct: 369 HSQKGELICLFGCGGDRDTGKRPEMAKVAEKLASQVILVDDNPRTEQASVIMQDI---LA 425

Query: 438 GFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           GF +K       +R EAIR A++  +  D+++VAGKGHE   I+
Sbjct: 426 GFTKKEGVQCIHSREEAIRYALKHASAGDIILVAGKGHEDYQII 469


>gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
 gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
          Length = 520

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 159/483 (32%), Positives = 229/483 (47%), Gaps = 43/483 (8%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +D+R + AG  F A   +  D   FI  AI +GA A++V          A++    P L 
Sbjct: 33  ADTRSLAAGDAFFAYAVDGADNRAFIDAAIERGAAAVLVQPEGFTGKLDASVTHAVPAL- 91

Query: 95  VDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                +     AS  Y    + +LAV  TGT+GK+S + +V       G     +G   T
Sbjct: 92  ----NELAGTIASAWYRDPSDAMLAVGITGTNGKTSCSQWVAAALSARGTRCAIVGTLGT 147

Query: 153 --ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +         TTP    L ++L+ L   G   V++E SSH L Q R++G       FT
Sbjct: 148 GFVGQLVHTG-FTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFT 206

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVL 268
           NL +DH+DYH T +AY  AK RLF    P+   A+I  DDA  + ++   R H    R +
Sbjct: 207 NLTQDHLDYHGTFEAYETAKARLFA--WPELRAAVINRDDAAGRRLLASTRGH---ARTI 261

Query: 269 SVGYQGK--------------FIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVY 313
           + G +G+              ++    V A        +S  +  + D      G F V 
Sbjct: 262 AYGIEGEHGDADAKGAHQADAWLAASNVRATATGTAFHLSTSDWGNADVEVQTLGLFNVS 321

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371
           N L   G+ +A  +     L  L KL  V GR + +G   +     + +DYAHT ++LE 
Sbjct: 322 NLLAVLGVLLAADVPFGAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 381

Query: 372 ILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L+ +R I + R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP  I
Sbjct: 382 TLEALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSEDPLSI 441

Query: 429 RAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             +I  G+     K  R+E    AI  AI    ++DV+V+AGKGHE    +  G+K+   
Sbjct: 442 IEQIAAGMQD-ASKARRVEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFS 499

Query: 485 DCD 487
           D D
Sbjct: 500 DQD 502


>gi|218671408|ref|ZP_03521078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli GR56]
          Length = 222

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 128/193 (66%)

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           H ++V    +KQ   I +  + F+   PL G+ QV NALVAAGL ++ G++  + +  LE
Sbjct: 3   HAERVEHFRHKQMAEIHIGDEIFEVDIPLAGDLQVANALVAAGLAMSTGVEPNVAMAALE 62

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           KL    GR E VG    G   YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+G
Sbjct: 63  KLVGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRG 122

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           KRPIMG+IA  LAD+ IVTDDNPRSE+P  IRAEI+   P   E  +R  AIR A+ ML 
Sbjct: 123 KRPIMGEIACRLADVVIVTDDNPRSEEPAAIRAEIMAAAPCASEIADRATAIREAVAMLT 182

Query: 458 KQDVLVVAGKGHE 470
             D L+VAGKGHE
Sbjct: 183 SGDTLIVAGKGHE 195


>gi|254370090|ref|ZP_04986096.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151568334|gb|EDN33988.1| hypothetical protein FTBG_01187 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 484

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 251/492 (51%), Gaps = 27/492 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 7   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
            ++V++ ++  +D          +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 67  -SLVLTDSHEFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY   +   ++ 
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K ++  +  G+   ++  
Sbjct: 235 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFN--GRFVGEYTT 292

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 293 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E
Sbjct: 349 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 408

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE  ++  NG K
Sbjct: 409 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHE-CYLDKNGAK 467

Query: 481 KMSVDCDIIREI 492
           +   + +II+ +
Sbjct: 468 EYFDEREIIKNM 479


>gi|118462627|ref|YP_881535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
 gi|254775003|ref|ZP_05216519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|167017295|sp|A0QF47|MURE_MYCA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|118163914|gb|ABK64811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
          Length = 520

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 171/521 (32%), Positives = 247/521 (47%), Gaps = 61/521 (11%)

Query: 11  FPELINQLSIFPMQWRERK-------INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            P L +Q+    M   +R+       +  V+  ++ +  G +F A+ G    G     +A
Sbjct: 18  LPALADQVGAV-MAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I +GA A++  +A   Q    T    TP L+    R  L   A+ +Y  HP   L V G 
Sbjct: 77  IERGAVAVLTDAAGVAQ---LTGGRTTPTLLHPRPRSVLGELAAAVY-AHPSERLTVIGI 132

Query: 124 SGKSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLS 178
           +G S   +    V+   + +G ++  IG T  I     D  + LTTP    L   L+ ++
Sbjct: 133 TGTSGKTTTTYLVESGLRAAGRTAGLIG-TVGIRIDGADIPSALTTPEAPALQALLAAMA 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q V  V +E SSH L   R+DG +   G FTNL RDH+D+H T   YF AK  LF+   
Sbjct: 192 EQRVDTVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNS 251

Query: 239 P-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P +   A++  DD   +E+  RA +A    ++V  +G+  H + V      +   +   G
Sbjct: 252 PLRAHRAVVCIDDEAGREMAARAGDA----VTVSAEGQPAHWRAV------EVAPLGTGG 301

Query: 298 KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + F  + P          LPG + V N LVA  L  A+G+        L +  V PGR E
Sbjct: 302 QQFTVIDPAGVQHRAGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQTRV-PGRME 360

Query: 348 FVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            +      G+ +   VDYAH   +L  +L +++     R+ VVFG GG+RD GKR  MG 
Sbjct: 361 EIDA----GQDFLALVDYAHKPGALRAVLSSLKRPDR-RLAVVFGAGGERDPGKRAPMGA 415

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNK 458
            A +LAD+ +VTDDNPR EDP  IR EI+ G          IE G+R  AIR A+     
Sbjct: 416 TAAELADLVVVTDDNPRGEDPAAIRREILAGATESGCAAEVIEIGDRRAAIRHAVAWAGP 475

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD-----CDIIREILG 494
            DV++VAGKGHET      GE     D      + +RE +G
Sbjct: 476 GDVVLVAGKGHETGQ--RTGEHTRPFDDRVELAEALREAVG 514


>gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
 gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
          Length = 501

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 162/473 (34%), Positives = 243/473 (51%), Gaps = 49/473 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R R   E+ +DSR ++AG  FVA  G   DG  ++ QA+AQGA A++V  A  LQ F   
Sbjct: 19  RSRVQGELQTDSRKVKAGDAFVAWPGAATDGRAYVGQALAQGAAAVLVE-ADGLQAFDL- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ------I 136
             S   I  +   +    L A + +  HP    ++LAVTGT+GK++ A ++        +
Sbjct: 77  --SGDRIASLKGLKAATGLIADQWFA-HPSGELDVLAVTGTNGKTTTAWWLAHALSKVTL 133

Query: 137 CQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             R+G +   +  +G    + S      +TTP P+ L +A    + QG+   ++EASS G
Sbjct: 134 NTRTGCALVGTLGVGVPPALESTG----MTTPDPVLLQRAFRSYADQGLAACAIEASSIG 189

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           + +HRLDG K+    FTN  +DH+DYH +  AY+ AK +LF+   P    A++  DDA+ 
Sbjct: 190 IVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFD--WPGLPTAVVNIDDAHG 247

Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +  R       V SV  QG   +  K +         T+   G        L G++ V
Sbjct: 248 ARLWARLQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNV 307

Query: 313 YNAL--VAAGLCIAIGIDSAL-VLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
            N L  +AA  C+ + ++ A+    HLE    VPGR + +    + G+  + VDYAHT +
Sbjct: 308 SNLLGVLAALRCLGLTLEEAVAACAHLEP---VPGRMQQI---VKPGQPLVAVDYAHTPD 361

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L+ ++       G++  VFGCGGDRD  KRP+MG+ A   AD   VT DNPRSE 
Sbjct: 362 ALEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQAAQANADGVFVTSDNPRSEV 421

Query: 425 PEKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVVAGKGHE 470
           PE I  +I+ G    ++ G  +        AI  AI   + +DV+++AGKGHE
Sbjct: 422 PESIIDQILAG----MQAGETLHVQADRAAAIAQAIARADARDVVLIAGKGHE 470


>gi|56707568|ref|YP_169464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670039|ref|YP_666596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134302497|ref|YP_001122467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931371|ref|YP_001891355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|224456637|ref|ZP_03665110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254874387|ref|ZP_05247097.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604060|emb|CAG45053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320372|emb|CAL08436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134050274|gb|ABO47345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187712280|gb|ACD30577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|254840386|gb|EET18822.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158724|gb|ADA78115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 479

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 250/492 (50%), Gaps = 27/492 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
            ++V++ ++  +D          +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  -SLVLTDSHEFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K +  +   G+   ++  
Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E
Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE  ++  NG K
Sbjct: 404 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHE-CYLDKNGAK 462

Query: 481 KMSVDCDIIREI 492
           +   + +II+ +
Sbjct: 463 EYFDEREIIKNM 474


>gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
 gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
          Length = 491

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 223/460 (48%), Gaps = 23/460 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+   +++ DSR I+ G +F+A+ G+K DG  FI +A+AQGA A++V +    +     +
Sbjct: 16  EQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDNPQEQGKVIV 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQR-SGL 142
                 +      K +S  A+  Y     H   I+ +TGT+GK+S +    Q+    SG 
Sbjct: 76  AEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGKTSTSQLCAQLVTLLSGK 135

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++      + +     D+  TT   I L + L   +++GV   ++E SSHGL Q R+D +
Sbjct: 136 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTCAMEVSSHGLVQGRVDAV 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL RDH+DYH   + Y  AK  LF          ++  DD      +    N
Sbjct: 196 PFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFR--FDSLRHGLLNLDDPIGGAWLAELKN 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQ--------QVTISVEGKDFDFLFPLPGEFQVYN 314
              ++      G  I   K  A + K         Q T+     + D   PL G F + N
Sbjct: 254 VPAKIW-----GFSIEAHKAAAFYTKNVRFNDQGVQATLVWPEGEIDISSPLLGAFNLSN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G+D   +   +  L  V GR E   T +    + VDYAHT +++E  L 
Sbjct: 309 LLAALSALYLQGMDMRALAAKVPYLVPVAGRMERF-TTADNITLVVDYAHTPDAIEQALN 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  +VT DN RSEDP +I  +II 
Sbjct: 368 ALRRHCAGVLWCVFGCGGDRDKGKRPLMGQAAEQFADRIMVTSDNARSEDPNQIITDIIQ 427

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G+      + + +R+ AI+  +      DV+++AGKGHET
Sbjct: 428 GLTHPERALTEVDRVAAIKQVVAQAKSGDVILLAGKGHET 467


>gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
 gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
          Length = 483

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 158/491 (32%), Positives = 243/491 (49%), Gaps = 59/491 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ DSR++  G IF+A  G + DG+ F P AI  GA AI  S           + S
Sbjct: 22  EVRNLTKDSRNVGFGDIFIANKGKQFDGNDFSPLAIENGAIAIASSIYNPFLSVVQIVSS 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           N P L  + + K+ +  + +L       I+ VTGT+GK++V+  ++ +       S  IG
Sbjct: 82  NLPQLEAELSAKYYNYPSKKLC------IVGVTGTNGKTTVSHLIKTLFDGCNKPSGLIG 135

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TI     +NR+    TTP    L K L+ +    +T   +E SS GL   RL  +  
Sbjct: 136 ---TIEHVLGNNRIQDGYTTPESCLLQKYLAEMVKNRLTSAVMEVSSVGLVLERLAEVDF 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+  DH+D+H + + Y NAK++LF + LP    A++  D +Y+   ++      
Sbjct: 193 DVGVLTNITLDHLDFHGSFEEYINAKLKLFSK-LPATGLAVVNGDLSYASRFLEMT---- 247

Query: 265 CRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYN 314
                   Q + I     C A +    +  S  G DFD ++         PL G+  VYN
Sbjct: 248 --------QAQPITYGIECPADYRAMHLRSSPFGTDFDLVYRGESLPCRLPLIGKHNVYN 299

Query: 315 ALVAAGL----CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            L A  +    C     D   ++     +    GR E V +      IY+DYAHT ++LE
Sbjct: 300 ILAAIAVAHQHCNG---DLQQLISLAANVESPRGRLEPVFSGP--CPIYIDYAHTPDALE 354

Query: 371 MILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            + K +  +    G++IVVFGCGGDRDQ KR IM ++ ++    A+VT DNPR EDPE  
Sbjct: 355 NVCKTLHALLPEQGKLIVVFGCGGDRDQSKRQIMAEV-VERYGFAVVTSDNPRGEDPE-- 411

Query: 429 RAEIIHGI-PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             EII  I  GF+++      +R +AI  A+ + + +D+++VAGKGHET  I  +     
Sbjct: 412 --EIIKAICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETYQIFKHQTIAF 469

Query: 483 SVDCDIIREIL 493
             D +I+RE+L
Sbjct: 470 D-DKEIVREVL 479


>gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 512

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 155/494 (31%), Positives = 235/494 (47%), Gaps = 39/494 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+ +   E +    I   Q  + ++N V  DSR +  G IF  + G + DGH F 
Sbjct: 1   MKLNNLLDRLQGEPLLTEVISSGQAMDVEVNRVVFDSRSVSPGDIFTCVPGGRTDGHGFA 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ +GA A+ V+   +            P LV  + R F+   A+ LYG    ++  +
Sbjct: 61  RDAVDRGAVALCVARPLA--------EVQVPQLVSRDPRAFMGRLAATLYGWPARDLKMI 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSY 176
            +TGT+GK++    +  I +  G  +  +G        +F   +R TTP    +   L  
Sbjct: 113 GITGTNGKTTSTYMMGSILEAQGTRTGLLGTVFYCDGVTFEHADR-TTPEGADVQWFLKR 171

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +         +EASSHGL Q R++G +   G FTNL  +H+D+H T+ AYF+AK  LF  
Sbjct: 172 MRDNSCQACVMEASSHGLKQGRIEGCEFDGGLFTNLTPEHLDFHLTEDAYFDAKRLLFNR 231

Query: 237 LLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            + +       A D     ++     R H  G RV+                 ++ + +T
Sbjct: 232 YMKEGWVGASNASDPRGAALLMEHPDRMH--GYRVIGSNESPVEGCWCGRIRSYDLEGMT 289

Query: 293 ISVEGKDFDFLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + V        F     PL G +   NA+    L + +GI    V+  L  +  VPGR E
Sbjct: 290 LEVYDPRGRLAFREVSLPLIGTYNGENAMGVIALSMGMGIGGDAVVRGLASMPQVPGRLE 349

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                +R   + +DYAHT + LE +L  +R +T G++ VVFG GG+R    RP +G +A 
Sbjct: 350 TYRFPNRVVGV-IDYAHTPDGLEKVLGALRGVTVGKLWVVFGHGGERTGSHRPKLGAVAA 408

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GF-----IEKGNRIEAIRTAIEML 456
            LAD A+VT DNPRSEDP  I A+I+ GI       GF     +++G   EAIR A++  
Sbjct: 409 SLADRAVVTMDNPRSEDPASIAAQIVSGISHARAREGFQHWVILDRG---EAIRYALDNA 465

Query: 457 NKQDVLVVAGKGHE 470
              DV+ + GKG E
Sbjct: 466 EIGDVVAITGKGPE 479


>gi|257056722|ref|YP_003134554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586594|gb|ACU97727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 524

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 160/466 (34%), Positives = 239/466 (51%), Gaps = 43/466 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++   +  ++H+  G +F A+ G +  G  F   A+A GA A++     + +   A   S
Sbjct: 50  RVTGATLRAQHVLPGDLFAALPGARAHGADFTADAVAGGAVAVLTDEEGASR--PAVRES 107

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
             P+L+  + R  L   A+ +YG+ P   L+V G +G S   +   FV+   + +G  + 
Sbjct: 108 GLPVLIHPDPRGVLGSVAAWIYGE-PSLTLSVLGITGTSGKTTTSYFVESGLRAAGYHTG 166

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T I S    +  TTP    L    + +  +GVTHV++E SSH L   R++G + 
Sbjct: 167 LIGTVETRIGSERLASAFTTPEAPDLQALFADMVERGVTHVAMEVSSHALALGRVNGTRF 226

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-VMKRAHNA 263
             G+FTNL +DH+D+H+  + YF+AK  LF+    + +  I+  D A+ +  V  R    
Sbjct: 227 TVGAFTNLSQDHLDFHRDMEDYFSAKSLLFDG---RSTHEIVVVDSAWGQALVTPRTVTV 283

Query: 264 GCRVLS-VGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                S  G++   I L        +Q  T+ + +G+    + PLPGEF V NA++AA +
Sbjct: 284 STEPDSDAGWRATDITLTP----GGEQSFTLHAPDGRKAQAVLPLPGEFNVANAVLAAAI 339

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--------VDYAHTSNSLEMIL 373
              +G+D   VLE L  + V PGR E         R+Y        VDYAH   ++   L
Sbjct: 340 LDTVGVDLDAVLEGLATVEV-PGRME---------RVYLGQPFTAVVDYAHKPAAVTQAL 389

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R  T GR+I V G GGDRD  KRP+MG+ A   +D+ IVTDDNPRSEDP  IR  I+
Sbjct: 390 RALRARTEGRLITVIGSGGDRDTAKRPMMGEAAARGSDLVIVTDDNPRSEDPAAIREAIL 449

Query: 434 HGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            G            +E G+R EAI  A+E     DV+ VAGKGHE+
Sbjct: 450 AGARAVGPAEGCEVLEIGDRREAIAAAVERAEAGDVVFVAGKGHES 495


>gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
 gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
          Length = 499

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 144/460 (31%), Positives = 223/460 (48%), Gaps = 19/460 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FS 83
           +  N+++ DSR I+ G +F+A+ G+K DG  FI + +  GA A++V +  + Q      S
Sbjct: 18  QSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKVLDLGAAAVLVHTDDADQHGKVLHS 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138
                   I     +R+  ++ A R    H        ++ +TGT+GK+S +  + Q+  
Sbjct: 78  DNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  +  +G     +     D+  TT   I L + L    +QG +  ++E SSHGL Q 
Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+D +      FTNL RDH+DYH   ++Y  AK  LF          ++  DDA     +
Sbjct: 198 RVDAVSFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FSTLGHGLLNLDDAVGASWL 255

Query: 258 KRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
               +   ++      G+Q    + K           T+     + +   PL G F + N
Sbjct: 256 TELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVWPEGETEIHSPLLGAFNLSN 315

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G D   + E ++ L  V GR E   T +    + VDYAHT +++E  L 
Sbjct: 316 LLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTANNITLVVDYAHTPDAIEQALN 374

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R   +G +  VFGCGGDRD+GKRP+MGK A   AD  +VT DN RSEDP +I  +II 
Sbjct: 375 ALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQYADRIMVTSDNARSEDPAQIITDIIQ 434

Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G+      + + +RI AI+  + +    DV+++AGKGHET
Sbjct: 435 GLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474


>gi|227543129|ref|ZP_03973178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181117|gb|EEI62089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 507

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 215/454 (47%), Gaps = 26/454 (5%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+ G +  G  F     +Q A  +     Y +   +   R   P++V D+ R  L  
Sbjct: 42  LFAAVAGTRSHGAKF--AGSSQAAAIVTDKPGYEILKTAGETR---PVIVFDDLRAHLGA 96

Query: 105 FASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQDN 160
            ++ + G +P   + V G +G S   +    ++     +G +   IG T T I+      
Sbjct: 97  VSALVCG-NPSACMTVIGITGTSGKTTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPT 155

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            LTTP    L +    +   GVTHV +E SSH +   R+ G+      FTNL +DH+D+H
Sbjct: 156 SLTTPEAPTLQELFLTMRDAGVTHVVMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFH 215

Query: 221 QTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            T + YF+ K +LF    P +   +II  DD +  ++ + A  A   V + G    F+  
Sbjct: 216 PTMEDYFHTKAKLFVPGSPLRAKKSIICVDDKWGVDLTRLAGPAATTVSTKGAPANFMAT 275

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                     Q T++ +GK       +PG F V NA +A        +D    +  L  +
Sbjct: 276 DIETEPDGTSQFTVAYKGKKQRVTLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANI 335

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            V PGR E +  N +G    VDYAH   +LE  +K +R    GR+I VFG GGDRD GKR
Sbjct: 336 QV-PGRMEKI-DNDKGVLAVVDYAHKPAALEAAIKAVRDEVEGRVIAVFGAGGDRDHGKR 393

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI------------EKGNRIE 447
           PIMG  A+  AD+ I+TDDNPRSEDP  IR  I  G   F+              G+R +
Sbjct: 394 PIMGSAAVAGADVVIITDDNPRSEDPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQ 453

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           AI  A+      D ++VAGKGHE   +V  GE +
Sbjct: 454 AIALAVNKSQAGDAIIVAGKGHEQGQLV-GGEMR 486


>gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
 gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
          Length = 479

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 250/492 (50%), Gaps = 27/492 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  +++  L I  +     +I  +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KNINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
            ++V++ ++  +D          +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  -SLVLTDSHQFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYY--KKYQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K +  +   G+   ++  
Sbjct: 230 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E
Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E I  +I  G       I   +R +AIR +IE  N+ D++++AGKGHE  ++  NG K
Sbjct: 404 SIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 462

Query: 481 KMSVDCDIIREI 492
           +   + +II+ +
Sbjct: 463 EYFDEREIIKNM 474


>gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS)
 gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 497

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 151/481 (31%), Positives = 237/481 (49%), Gaps = 18/481 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ I+ +  DSR +  G +F+A+ G K+DG  FI QAI + A AI+  +    +      
Sbjct: 19  KKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIFKY 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
             N  ++      + +SL A+R Y K P     I+ +TGT+GK++V   + Q     G  
Sbjct: 79  IKNVILIYFFKLSENVSLLANRFY-KEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTK 137

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G       +  Q    TT SPI++   LS +  +    V++E SSHGL QHR+  +
Sbjct: 138 TATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEV 197

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+  + Y +AK  LF     K    I+ ADD Y K  +K+  N
Sbjct: 198 PFYIAIFTNLTQDHLDYHENLEKYESAKWLLFST--HKVKKIILNADDQYGKIWLKKLLN 255

Query: 263 AGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                +++       Y  K+I+   +   +N   +T             L G F V N L
Sbjct: 256 FYTVAVTIQNRKQKKYSTKWINATNIEQNNNSIYITFESSWGTGRISSCLIGRFNVTNLL 315

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           ++    + +G   + ++   EK+  V GR E      +   I +DYAHT ++L+  L  I
Sbjct: 316 LSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFI-IDYAHTPDALKKTLNAI 374

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            +     I  +FGCGG+RDQ KRPIMG IA  ++D  I+T+DNPR+E  +KI  +I++G 
Sbjct: 375 HSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQDILNGC 434

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 +   +R +AI  A        ++++AGKGHE   I+ N     S D  I+  +L
Sbjct: 435 KNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKIVLNLL 493

Query: 494 G 494
           G
Sbjct: 494 G 494


>gi|227488524|ref|ZP_03918840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091418|gb|EEI26730.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 507

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 215/454 (47%), Gaps = 26/454 (5%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+ G +  G  F     +Q A  +     Y +   +   R   P++V D+ R  L  
Sbjct: 42  LFAAVAGTRSHGAKF--AGSSQAAAIVTDKPGYEILKTAGETR---PVIVFDDLRAHLGA 96

Query: 105 FASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQDN 160
            ++ + G +P   + V G +G S   +    ++     +G +   IG T T I+      
Sbjct: 97  VSALVCG-NPSACMTVIGITGTSGKTTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPT 155

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            LTTP    L +    +   GVTHV +E SSH +   R+ G+      FTNL +DH+D+H
Sbjct: 156 SLTTPEAPTLQELFLTMRDAGVTHVVMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFH 215

Query: 221 QTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            T + YF+ K +LF    P +   +II  DD +  ++ + A  A   V + G    F+  
Sbjct: 216 PTMEDYFHTKAKLFVPGSPLRAKKSIICVDDKWGVDLTRLAGPAATTVSTKGAPANFMAT 275

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                     Q T++ +GK       +PG F V NA +A        +D    +  L  +
Sbjct: 276 DIETEPDGTSQFTVAYKGKKQRVTLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANI 335

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            V PGR E +  N +G    VDYAH   +LE  +K +R    GR+I VFG GGDRD GKR
Sbjct: 336 QV-PGRMEKI-DNDKGVLAVVDYAHKPAALEAAIKAVRDEVEGRVIAVFGAGGDRDHGKR 393

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI------------EKGNRIE 447
           PIMG  A+  AD+ I+TDDNPRSEDP  IR  I  G   F+              G+R +
Sbjct: 394 PIMGSAAVAGADVVIITDDNPRSEDPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQ 453

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           AI  A+      D ++VAGKGHE   +V  GE +
Sbjct: 454 AIALAVNKSQAGDAIIVAGKGHEQGQLV-GGEMR 486


>gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida
           GA99-3549]
          Length = 479

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 251/492 (51%), Gaps = 27/492 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I+ +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
            ++V++ ++  +D          +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  -SLVLTDSHQFED-------QKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYY--KKYQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K +  +   G+   ++  
Sbjct: 230 NIDDEYGQRLCNMTQAPIITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E
Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E I ++I  G       I   +R +AIR +IE  N+ D++++AGKGHE  ++  NG K
Sbjct: 404 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 462

Query: 481 KMSVDCDIIREI 492
           +   + +II+ +
Sbjct: 463 EYFDEREIIKNM 474


>gi|313899192|ref|ZP_07832712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312956015|gb|EFR37663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 468

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 235/470 (50%), Gaps = 24/470 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S D+R ++  W+FV   G+  DG  F+ +A+ +GA  ++      +Q    T  
Sbjct: 13  RILQGISDDTRDVKKDWLFVCRKGSLYDGAAFLQEALDKGA-VVLCDQMLPMQHVYYTPH 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                 V   T+  L L+   L  +   +++ +TGT+GK+SVAS + Q+ +  G    QI
Sbjct: 72  ------VERITQALLELYYGDLCTR--LHVIGITGTNGKTSVASIISQLLKMEGCRVLQI 123

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G  S        +   TTP    LA        + +THV +E SSH +DQ+R+  +    
Sbjct: 124 GTGSVRYPDEVIEIHNTTPGCFQLANYFRRAHDEKITHVVMEVSSHAIDQNRISFLHFDD 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGC 265
             +TN+ +DH+DYH T+  Y   K +L   L P+ +  I+Y  D +Y +E++  A +A  
Sbjct: 184 IVYTNITQDHLDYHLTRVHYRYTKFKLRRYLKPQGT--IVYNSDLSYMQELVNLAQHA-- 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +S+G Q     L  V    +   ++  ++G  +DF   L G   VYN   A  +   +
Sbjct: 240 -CISIGMQAAHFPLHHVEL--SDHDLSFRLQG--YDFHARLLGMVNVYNLAEAIVVVHRL 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     + +  EKL  V GR E +     G  I++DYAHT+ ++E +L    ++  GRI+
Sbjct: 295 GFSYERLRKDCEKLLPVSGRMEVMEVG--GFTIWIDYAHTAAAVEELLVFANSVKKGRIL 352

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGN 444
            + GCGG+RD+ KRP M  IA   +D+A+ T DNPR E  ++I A++     P      N
Sbjct: 353 TILGCGGERDRTKRPAMAAIAAKYSDLAVFTSDNPRGESVDRILADMKCESFPNAAVFEN 412

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           R  AI+  I++    D++++AGKG E   I   G++    D   ++E L 
Sbjct: 413 RYFAIKHTIKVAQNSDIIIIAGKGSEET-ITAFGQEYPFSDRSCVKERLA 461


>gi|261345649|ref|ZP_05973293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
 gi|282566131|gb|EFB71666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
          Length = 495

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 160/506 (31%), Positives = 240/506 (47%), Gaps = 40/506 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   L+ F +      + E++ DSR   AG +F+A+ G++ DG  +IPQAIAQG  AI+ 
Sbjct: 6   LCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVAAIIA 65

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +    ++    +    P++ + +    LS  A   Y   P + + + G +G +   +  
Sbjct: 66  EAQGEAEEGEIRVVHGVPVIYLHDLNNRLSALAGEFY-HQPSSKMKLVGVTGTNGKTTTT 124

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHV 185
           Q I Q +      +G TS +     +  L        TT S + +   L+ L ++  T  
Sbjct: 125 QLIAQWAK----GLGETSAVMGTVGNGLLGHVSPSENTTGSAVDIQLELTQLLNKKATLT 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSHGL Q R+  +   A  FTNL RDH+DYH   + Y  AK  LF     K    I
Sbjct: 181 AMEVSSHGLIQGRVAALNFDAAVFTNLSRDHLDYHGDMENYEAAKWLLFSTHQTKTQ--I 238

Query: 246 IYADDAYSKEVMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           I ADD    + + R   A C V     +   +QG ++    V        +  +    + 
Sbjct: 239 INADDDVGLKWLHRLPQA-CAVTMENRIPKNWQGSWLKATNVDYHDKGATIHFASSWGEG 297

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  PL G F V N L+A    + +      +L   + L  V GR E   T  +   + V
Sbjct: 298 SFESPLMGAFNVSNLLLAMATLLMMDYPLDKLLAATDFLMPVCGRMEVFSTEGKP-TVVV 356

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L   R    G++  VFGCGGDRD+GKRP+MG  A   AD  ++TDDNP
Sbjct: 357 DYAHTPDALEKALLAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNP 416

Query: 421 RSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           RSE+P  I  +I+ G         IPG      R EA+ + I      DV++VAGKGHE 
Sbjct: 417 RSEEPLDIINDIMAGILDSSRVLAIPG------RPEAVTSTILQAQPDDVILVAGKGHED 470

Query: 472 VHIVTNGEKKMSV-DCDIIREILGLI 496
             I+  G +++   D   +  +LG++
Sbjct: 471 YQII--GSRRLDYSDRLTVARLLGVV 494


>gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 493

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 240/497 (48%), Gaps = 67/497 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  D+  I  G  F+A  GN   G  +I  A+ +GA AIVV       +    +  
Sbjct: 21  EIKRVEDDANLILPGDAFIARKGNNSSGISYIDSALEKGAAAIVVDDENYFNEADLPV-- 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             PI+ V N   F++  ++++Y    E   ++AVTGT+GK++V  F+ QI  +    +  
Sbjct: 79  --PIIWVPNCLSFIAYASAKIYNFPAEALTVIAVTGTNGKTTVTHFIGQILNQLDKRAMV 136

Query: 147 IGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQG----VTHVSVEASSHGLDQHR 198
           IG           + +   LTT      AK + +L  +     V +V +EASS GL++HR
Sbjct: 137 IGTNGVFIDREKCYPEMEALTTLQ----AKNIQFLFKEAIRLDVPYVVLEASSIGLEKHR 192

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD   +  G F N+  DHI+ H + + Y  +K  L    L K++  II +DD+       
Sbjct: 193 LDHCDIDIGIFLNVTEDHIEDHGSFERYKLSKQIL--STLAKKN--IINSDDSV------ 242

Query: 259 RAHNAGCRVLSVGYQGKFIHLKK-------------------VCAIHNKQQVTISVEGKD 299
                 CR + +  +GK I   K                    C  H K++  +++    
Sbjct: 243 ------CRSIGLATKGKRIFFGKGSHVDYFFQTLVDGPASTTCCIQHKKEKHIVNI---- 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G++Q  N L A      +    + +   +  L +  GRFE V  N  G  I 
Sbjct: 293 -----PLVGDYQCSNVLAAISCIAQLDFPLSDICNTIGNLVLPEGRFEHV-ENQLGLSIV 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++++MIL+ ++  T  R+IV+F CGG+RD+ KRP MG IA   AD  I+T DN
Sbjct: 347 VDYAHTPDAMKMILQTLKKHTKRRLIVMFSCGGNRDKAKRPKMGMIASIYADYIILTTDN 406

Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            R+E+P++I  +I  G      +IE  NR EAI  A+    K D +V+ GKGHE    + 
Sbjct: 407 ARNENPQQINKQIREGFSSTQEYIECLNRKEAIEHALNYAEKGDTIVLLGKGHEKTQQIG 466

Query: 477 NGEKKMSVDCDIIREIL 493
           + +K  S D   +RE++
Sbjct: 467 DKQKYFS-DLVFVREMI 482


>gi|146329007|ref|YP_001209875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
 gi|146232477|gb|ABQ13455.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
          Length = 482

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 237/481 (49%), Gaps = 41/481 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL+  L +      ++ I+ +S DSR +    +++A  G +     F    I     AI 
Sbjct: 6   ELLTALGLSTAAVDDKPISALSLDSRVLNEQMLWLATRGTQYHALDFYTPEI--NCAAIF 63

Query: 73  VSSAYSLQDFSATIRSNTP--ILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKS 127
               Y           N P   + V+   + +S  A   Y  HP     I  VTGT GKS
Sbjct: 64  YEPPYQ----------NPPPHAITVERLSEKVSAIADLFY-DHPAQKLWITGVTGTDGKS 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S+  F+ Q    + L +   G  + +    Q    TTP  I   + L++  +QG   V++
Sbjct: 113 SLVHFIAQATGAAMLGTIGYGNLNAL----QPASHTTPDAITTQQQLAHFVAQGNQAVAM 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L QHR+  + +    FTNL RDH+DYH   + YF AK +LF    P +  A+I 
Sbjct: 169 EISSHALAQHRVAAVAVDVAVFTNLSRDHLDYHADMEDYFLAKAQLFA--FPIKH-AVIN 225

Query: 248 ADDAYSKEVMK--RAHNAGC--RVLSVGYQGKFIHLKKVCA----IH-NKQQVTISVEGK 298
            DD + + ++   R +++ C   V + G      H   VCA    +H N    T++++ +
Sbjct: 226 IDDPHGRRLISEHRINSSACIWAVSAKGAHNAAAH-HNVCAHDYCLHQNGVTFTLAIDDE 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L   F + N L  A    A G   A + E L +LH V GR E +  +++   I
Sbjct: 285 TIAVETHLLARFNLDNVLNVAACLAAQGFSLAAIAEKLNQLHGVIGRVEPISLSNQALAI 344

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT+ ++E +L  IR   SG++ ++FGCGG+RD+GKR +M + A   AD  IVTDD
Sbjct: 345 -VDYAHTAGAIESVLTGIRPHISGKLWLIFGCGGNRDRGKRALMAQAAERFADAVIVTDD 403

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           NPR+EDP  I A+++ G   + EK +    R +AI  A+  L+  D +++ GKGHE   I
Sbjct: 404 NPRTEDPAAIIADVMQGFE-YPEKIHVIQPREQAIHYALAQLHAGDAVLITGKGHEDYQI 462

Query: 475 V 475
           +
Sbjct: 463 I 463


>gi|238923850|ref|YP_002937366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
 gi|238875525|gb|ACR75232.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
          Length = 495

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 160/496 (32%), Positives = 240/496 (48%), Gaps = 62/496 (12%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ L+ + D+  L     I        +I+ +  DSR ++   +FV I G   D H F
Sbjct: 6   MKLEKLLERMDYKVLAGSTDI--------EISTLVYDSRKVEKASVFVCISGAVSDAHDF 57

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHP 114
           IP  + +GA A+VV             +  TPI     + VDNTR  L+  ++  +    
Sbjct: 58  IPDVVKKGAAAVVVE------------KDVTPIEGVTYIKVDNTRLALACMSAAYFDYPA 105

Query: 115 ENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPI 168
           E I  +  T  K    +   V+ I + +G+ +  IG   TI S   D R+    TTP   
Sbjct: 106 EKIKTIGITGTKGKTTTTYMVKSILESAGIKTGLIG---TIESICGDKRIPSANTTPESY 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--AY 226
            + +    +  +G+  V +E SS  L  HR+ G     G FTNL  DHI  H+ +    Y
Sbjct: 163 RVQELFKEMVDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADY 222

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLK 280
            + K  LF +        I   DD + + VMK  H   C+V + GY+       + + LK
Sbjct: 223 MHCKSLLFRQC----RLGIFNGDDEHLEGVMK-GHT--CQVETYGYKSTNNLIAENVELK 275

Query: 281 KVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K    H    V   V G  DFD    +PG+F VYN+L A  +C    +D   + E L   
Sbjct: 276 KE---HGALGVKYHVSGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALH-- 330

Query: 340 HV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           HV V GR E V    R   + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +
Sbjct: 331 HVSVKGRIEIVPVTKRY-TLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSR 389

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454
           R  MG+++  LAD+ +VT DNPR E+P  I  +I+ G+      ++   +R EAIR  +E
Sbjct: 390 RYEMGEVSSRLADLTVVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCME 449

Query: 455 MLNKQDVLVVAGKGHE 470
                D++V+AGKGHE
Sbjct: 450 NAKDGDIIVLAGKGHE 465


>gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
 gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
          Length = 480

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 151/472 (31%), Positives = 228/472 (48%), Gaps = 49/472 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G I+  + G   DGH FI  AI  GA  IV S           + S 
Sbjct: 15  ITGLSFDSRTVRPGNIYFCLPGLTNDGHDFIDSAIKNGAVCIVHSKEL------LNMASG 68

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI------CQRSG 141
              + V++    ++  A   Y K  + +    VTGT+GKS++ + ++ +      C   G
Sbjct: 69  AVYIRVEDVNDAMNKVARIFYAKPSDKLKMYGVTGTNGKSTITNIIRDMINDKTPCGYIG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + + G         Q N LTTP  ++L   L+ +   G+   ++E SSHGL QHR+DG
Sbjct: 129 TIAIKYGDIEL-----QPN-LTTPDALFLQSKLADMVRVGMKACALEVSSHGLAQHRVDG 182

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I      FTNL  DH+D+H T + YF AK  LF+ L+ +   +I+  DD    E +K   
Sbjct: 183 ISFDCAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLVKENGVSILNRDDE-KYEALKDCS 241

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQV 312
            A  RV+S G   +        A +    + +S +G  FD ++          L G F V
Sbjct: 242 KA--RVVSYGINKE--------ADYRAINIKMSSQGTQFDLVYSGHMYPIKTNLVGNFNV 291

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L A       G D   ++E    +  V GR E +    +   + VD+AHT + +E +
Sbjct: 292 YNLLAAVSALNETGYDLDKIIEKCSHIAQVEGRMERIDC-GQPYNVIVDFAHTPDGMEKM 350

Query: 373 LKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           ++  R+IT    R+I VFG  G RD  KR + G++A    D  IVT+D+PR EDP++I  
Sbjct: 351 MQFGRSITMPGHRLIAVFGSAGKRDVHKRKVFGELADKYCDYIIVTEDDPRDEDPKEIAD 410

Query: 431 EIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           +I  GI      F++  +R EAI  AI    + D +++ GKG E+     NG
Sbjct: 411 QIKSGIQNTLHVFVQ--DRYEAIHQAISSAQEGDTVLLLGKGDESFIYRENG 460


>gi|213965229|ref|ZP_03393426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
 gi|213952081|gb|EEB63466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
          Length = 524

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 231/466 (49%), Gaps = 44/466 (9%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99
           +  G +F A+ G +  G  +  Q+ A      V++    L+       +  P+LVVD+ R
Sbjct: 39  VPEGGMFAAVPGTRTHGARYAQQSAATA----VLTDEEGLKILREAGETR-PVLVVDDVR 93

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISS 155
             +   A+ +Y  HP + L + G +G S   +    ++     +G S+  IG T T I+ 
Sbjct: 94  AVMGHVAAEIY-DHPSDSLTIIGVTGTSGKTTTTYMLEGALLAAGCSTGIIGTTGTRING 152

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
            A  + LTTP    L +    + S+GVTHV +E SSH L   R+DG+    G F NL +D
Sbjct: 153 RAVPSSLTTPEAPALQRLFHQMLSEGVTHVVMEVSSHALSLGRVDGVSFDVGCFLNLSQD 212

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMK-RAHNAGCRVLSVGYQ 273
           H+D+H+T + YF AK +LF+   P  +P A++  DD +   +    A +   +V +V  Q
Sbjct: 213 HLDFHKTLEEYFQAKAKLFDPAGPTHAPKAVVCIDDDWGVRMADIAAGDPDVQVTTVHTQ 272

Query: 274 -------------GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
                         ++       A +  Q V ++    D  +   PLPG F V NA VA 
Sbjct: 273 HRVTDKSPAAEVFAEWHAAAATVATNGVQHVELTRNNTDTVEVEVPLPGAFNVANAAVAW 332

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIR 377
            +  A+G         L ++ V PGR E +    RG      VDYAH   ++  +L  +R
Sbjct: 333 AVLDAVGHAKDAAKSGLAQVRV-PGRMERI---DRGQDFLAVVDYAHKPAAVAEVLATLR 388

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             T GR++VV G GGDRD  KRPIMG  A   AD+ I+TDDNPRSE P +IRA ++ G  
Sbjct: 389 AQTEGRVLVVVGAGGDRDSAKRPIMGAEAACGADVVIITDDNPRSEVPSEIRAAVVAGAK 448

Query: 438 GFI------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             +            E G+R +AIR  +E+ +  D +VVAGKGHET
Sbjct: 449 EAVASGKASSDTVVEEIGDRGQAIRRVVELAHSGDSIVVAGKGHET 494


>gi|293402023|ref|ZP_06646162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304415|gb|EFE45665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 489

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/478 (29%), Positives = 233/478 (48%), Gaps = 31/478 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY---SLQDFSA 84
           R +  VS DSR ++  W+FV   G   DG  +I  A+ +GA  +         + Q   A
Sbjct: 19  RILQGVSDDSRKVKKDWLFVCRKGITHDGAAYIDDALRKGAVVLCDKKRQWRKNGQKVEA 78

Query: 85  TI-RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
           T  +    +   ++            +G   ++  ++ V+GTSGK+SVA  +  I ++  
Sbjct: 79  TSHQEKEQVYACEDVEAIAQALIELYFGDLCKHLCVIGVSGTSGKTSVACIITHILRKQQ 138

Query: 142 LSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             +F+IG          DN+       TTP    LA  L     QG TH+ +E SSH +D
Sbjct: 139 KKTFRIGTHE-----VDDNQHIQAIPNTTPDSFTLANLLKEAIQQGFTHIVMEVSSHAID 193

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R+  +   A  +TN+ +DH+DYH T+  Y   K +L    L K+   II  D  Y   
Sbjct: 194 QNRICFMSYDAIVYTNITQDHLDYHFTRTHYMYTKFKL-RRYLKKDGFIIINKDFPY--- 249

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYN 314
           +MK  H +  +++++G+      ++    +H  +Q  I ++ G  + F+ PL G+  VYN
Sbjct: 250 LMKLQHLSDAKLITIGFDAAHFTIED---MHLSEQGAIFTING--YSFVIPLLGKMNVYN 304

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
              A  LC  + I    ++   + L  V GR E +    +   + +DYAHT +++E +++
Sbjct: 305 TTEAIALCHMLNITYEQLIASCQDLPYVSGRMELM--KGKKHTVLLDYAHTPDAVEKLME 362

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R+I  G++ +V GCGG+RD+ KR +M   A   +D+AI T DNPR E    I  ++  
Sbjct: 363 FARSICQGKLYIVVGCGGERDRSKRKLMADAACKYSDMAIFTSDNPRHESLSTILLDMCK 422

Query: 435 GIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                 E   NR  AI+  I++  + D++V+AGKG+E    V  G      D D +R+
Sbjct: 423 TTYQNYEVVENRYFAIKYTIKIAKESDIIVIAGKGNEKTQDV-EGRMYPFDDADCVRK 479


>gi|226953732|ref|ZP_03824196.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|294651781|ref|ZP_06729079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226835520|gb|EEH67903.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|292822338|gb|EFF81243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 499

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 232/469 (49%), Gaps = 45/469 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           W  +     S DSR ++ G IF+A+      E    F   A+  GA A++  +   +   
Sbjct: 17  WYTQPFQGFSLDSRKVEKGQIFIALSSYSQPEKTRQFAQNALDAGALAVISEATLGV--- 73

Query: 83  SATIRSNTPILVVDNTR----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                  T   V  + R    ++   +   +    P   +AVTGT+GK++++  + ++  
Sbjct: 74  -------TNEWVCPDVRYQMGEWQKQYLQAVDPVQPICGVAVTGTNGKTTISRLIAELIS 126

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G     +G T   I      +  TT   + L  AL   +  G   V++EASSHGL+Q 
Sbjct: 127 SQGKGCAVMGTTGNGILPNLTPSTHTTLDALQLQHALHDYAKLGARFVALEASSHGLEQG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RL+G  L    ++NL RDH+DYH T +AY  AK RLF+    K    +I  DDAY++ ++
Sbjct: 187 RLNGCDLEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFTTLKA--VVINLDDAYAQLML 244

Query: 258 K--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306
              +A+ +  ++L+         L +  A ++   +   + G +F  L P         L
Sbjct: 245 DAAKANPSQPKILTYS-------LTQAAADYHIDALEYRLSGANFTLLAPTGSYAVHSPL 297

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N L +       G D A ++E + +L   PGR + +   +R     VDYAHT 
Sbjct: 298 LGHFNVENLLASLIAAECAGFDLADLVEFVPQLQGAPGRMQVIQDANR--LFVVDYAHTP 355

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L  +L  ++   +G++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+ED  
Sbjct: 356 DALIQVLTTLKRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDHANPVILTSDNPRTEDQA 415

Query: 427 KIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +I A++  G+  F E       +R EAI+  +      D++V+AGKGHE
Sbjct: 416 QIFADMKQGM-NFTEHLMHEIHDRREAIKFVVAQAQAGDIVVIAGKGHE 463


>gi|119478641|ref|ZP_01618544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
 gi|119448418|gb|EAW29669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
          Length = 508

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 230/455 (50%), Gaps = 21/455 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ + SDSR I AG +F+A+ G+  DG  +I QA+A GA A++V  A    D       
Sbjct: 28  ELSGIQSDSRKIAAGNLFLAVAGHAVDGRDYIAQAVANGAAAVLVERAGHSAD--KLNYP 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N PI+ V+N    LS  A R Y    H  +I+ VTGT+GK+S      QI    G S   
Sbjct: 86  NVPIIAVENLNLKLSEIAGRFYNNPSHELSIVGVTGTNGKTSCTQLYMQIANLLGRSCGV 145

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I     +   TTP  I + K L+      +   ++E SSHGL+Q R+  ++  
Sbjct: 146 IGTLGAGIDGQLNEGLNTTPDAISIQKILAEWRDHELAVAAMEVSSHGLEQGRVADVQFE 205

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH +  AY   K RLF +  P    A+I  DD +   ++     A  
Sbjct: 206 LALFTNLSRDHLDYHGSMLAYGETKARLFRQ--PGLKCAVINIDDHFGCALVDEM-PATT 262

Query: 266 RVLSVGYQ--GKFIHLKKVCAIH-----NKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            V+  G +   +  H   V   +     +     +  +    +   PL GEF + N LVA
Sbjct: 263 DVIRYGVEPDARTNHSADVWVDNVRFHPSGVNARLHSDWGSVEINSPLLGEFNLSN-LVA 321

Query: 319 AGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              C  + G   + +   + KL  VPGR E +  +S    + VDYAHT + LE  L  +R
Sbjct: 322 VICCFGLQGFALSSIANVIPKLMTVPGRMERI-VSSADITVVVDYAHTPDGLEKALLAMR 380

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
             T G++  VFGCGG+RD GKRP+MG +    AD  +VT DNPR+E   +I  EI+ G+ 
Sbjct: 381 QHTDGKLWCVFGCGGNRDHGKRPLMGALVQRHADHVVVTSDNPRNESAAEIIDEILGGVD 440

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            P  +E+ +R  AI+ AI      D +++AGKGHE
Sbjct: 441 RPSMVEE-DRGLAIQFAIANALPGDCVLIAGKGHE 474


>gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 537

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 237/458 (51%), Gaps = 34/458 (7%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRSNTPILVV 95
           ++ I  G +F A+ G +  G  F   A+A+GA AI+   A ++L    + + S+ P+LV 
Sbjct: 60  AQGIVEGDLFAALPGARAHGAEFAADALARGATAILTDEAGFAL---VSALGSDMPVLVH 116

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           D+ R  L   ++ +YG+  E   ++ +TGTSGK++ +  V+     +G ++  +G   TI
Sbjct: 117 DDPRGVLGELSATIYGRPSEKMQVIGITGTSGKTTTSYLVEAALTAAGRTTGLVG---TI 173

Query: 154 SSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +  +  R    LTTP    L    + +  QG+  V +E SSH L   R+DG++   G+F
Sbjct: 174 ETRMRGRRVPSALTTPEAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDVGAF 233

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           TNL +DH+D+H+  + YF AK RLF  +       A+I  DD + + +   A  A   V 
Sbjct: 234 TNLSQDHLDFHRDFEDYFAAKARLFAADSSVHAQHAVICIDDVWGQRMADVARGAHSIVT 293

Query: 269 SVGY----QGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +V      +G            +  Q     + EG   D    LPG++ V NA +A  LC
Sbjct: 294 TVATTPDSEGAVWTAGPATVSPSGSQTFALTTAEGTTLDVELRLPGQYNVANASLAVALC 353

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTIT 380
            A+G+D    +E +  + V PGR + +    RG      VDYAH   ++E ++  +R   
Sbjct: 354 AALGVDPRDAVEGIAGVDV-PGRVQRI---DRGQDFLAVVDYAHKPAAVEAVIATLREQV 409

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR+ VV G GGDRD GKRP+MG  A   AD+ I+TDDNPRSEDP KIRA +  G  G  
Sbjct: 410 RGRVAVVVGAGGDRDAGKRPLMGAAAARGADLLIITDDNPRSEDPAKIRAAVREGALGVP 469

Query: 441 EK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           E          +R +AI  A+      DV++VAGKGHE
Sbjct: 470 ESERGQVWEVADRAKAIADAVGWAQAGDVVLVAGKGHE 507


>gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
 gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
          Length = 493

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 143/465 (30%), Positives = 234/465 (50%), Gaps = 34/465 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ ++  DSR +Q   +FV I G   DGH +  +A+  GA  +V      L +  A +  
Sbjct: 27  QVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGEMIAQV-- 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC----QRSGL 142
                +V +T + + L A++ +    ++I  + VTGT+GK+SV   +Q I     ++S L
Sbjct: 85  -----IVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMGEKSAL 139

Query: 143 SS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           S    F +      S+    + L+T   I+ AK       +G   +++E SSHGL   RL
Sbjct: 140 SGTIGFNLNGILYESANTTSDALSTQQMIFRAKM------EGCRLMTMEVSSHGLALGRL 193

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256
            G+      FTNL  DH+D+H T + Y +AK  LF +L   L K    ++ ADDA+S+  
Sbjct: 194 AGVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE-- 251

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN 314
            + A      V + G + +    + +   ++    +  VE  +  +     L GEF +YN
Sbjct: 252 -RYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLGEFNIYN 310

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G     ++E +E+L  V GR E V  +    +++VDYAHT +++E  ++
Sbjct: 311 VLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKV-CSELPVQMFVDYAHTPDAIEKAIE 369

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I + G GG+RD+ KRP M + A   A+  I+T D+PR ED   I  ++  
Sbjct: 370 AAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKA-SAAEYVILTTDDPRYEDYNSITGDLAK 428

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+    F   G+R EA+R AIE+    D+++ AGKGHE   I+ N
Sbjct: 429 GMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQIIEN 473


>gi|331088263|ref|ZP_08337182.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408507|gb|EGG87973.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 488

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 239/460 (51%), Gaps = 35/460 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++  +++DSR +++G +FV I G   DGH ++     +GA AI+       +D  A  
Sbjct: 20  ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKGAAAIIAE-----RDIEAP- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF- 145
                ++  +NTR  L+L ++  +G +P   L V G +G     +    I  RS L    
Sbjct: 74  -KGVTVIKAENTRYALALMSAAYFG-YPAEKLKVIGITGTKGKTTTTYLI--RSILEGVG 129

Query: 146 -QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++G   TI +   D ++    TTP    + +  + +  +G   V +E SS GL  HR  
Sbjct: 130 HKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVMEVSSQGLMLHRTA 189

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           GI    G FTNLG+DHI  + H+  + Y   K  LF++        I   DD Y +++ +
Sbjct: 190 GIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQQC----KLGIANIDDPYYEDIFR 245

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEGK-DFDFLFPLPGEFQVYN 314
               A C+V + G+  K  +  + V  +     + +S  V GK DFD    +PG+F VYN
Sbjct: 246 ---GATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDVEIDIPGKFSVYN 302

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A  +C   G+ S  + E L+  HV  GR E +   S    + +DYAH + SLE +L 
Sbjct: 303 SLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKV-SDDFTLMIDYAHNAMSLESLLT 360

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++     R++ VFGCGG+R + +R  MG+++  LAD+ I+T DNPR E+P++I  +I  
Sbjct: 361 TLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTIITSDNPRFEEPQEIINDIKV 420

Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           GI      ++E  +R EAI+ AIE     DV+V+AGKGHE
Sbjct: 421 GIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHE 460


>gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
 gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
          Length = 498

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 211/456 (46%), Gaps = 41/456 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G  FVAI G    G  F+ QA A GA AI+       +  +       P L  
Sbjct: 25  DSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGASAILFEPPAPAELPAPADAIAVPGL-- 82

Query: 96  DNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
              R  +   A + +G  P   +A   VTGT+GK+S    + Q     G  S  IG    
Sbjct: 83  ---RARMGAMADQFHGA-PSRAMAMVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGA 138

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +    +    TTP  + +   L+ L   G   V++E SSH LDQ R+D +      FTN
Sbjct: 139 GLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTN 198

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-------------- 257
           L RDH+DYH    +Y  AK RLF    P    A++  DDA+ +++               
Sbjct: 199 LTRDHLDYHGDMASYGAAKARLFHR--PGLKAAVVNLDDAFGRQLFAGLPAGVQPIGLSS 256

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           + A +A  R  ++   G+ I  + V            ++G+      PL G F V N L 
Sbjct: 257 RGATDASVRAEALQLDGRGIAFELV------------IDGQRAAVQSPLLGRFNVDNLLA 304

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            AG   A G     + E L  L  + GR   +G       + VDYAHT ++L+  L ++ 
Sbjct: 305 VAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPDALKQALDSLH 364

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G +  VFGCGG+RD GKRP M  IA  LA+  IVTDDNPR ED + I A+I+ G  
Sbjct: 365 GHLHGALFCVFGCGGERDTGKRPQMAAIAERLANQVIVTDDNPRGEDGDVIVADILAGFQ 424

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                  + +R  AI  A++     D++++AGKGHE
Sbjct: 425 NADAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHE 460


>gi|32490960|ref|NP_871214.1| hypothetical protein WGLp211 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316006|sp|Q8D2Z1|MURE_WIGBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25166166|dbj|BAC24357.1| murE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 496

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 151/481 (31%), Positives = 243/481 (50%), Gaps = 26/481 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+N +  +S+ I    IF+A+ GN   G  FI +AI  G+  I++ +   L+        
Sbjct: 23  KLNSIKLNSKKIIKNDIFIALYGNCNHGKNFIFEAIKNGSSIILIETKNILKHGIIYFIK 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           N PI+   N    LS  + + Y  HP    N++ +TGT+GK++++ F+ +     G    
Sbjct: 83  NIPIIYFYNLNYSLSELSGKFY-LHPSRYMNVIGITGTNGKTTISHFIAKWLFLLGE--- 138

Query: 146 QIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +IG   T+     +  + ++ TT S I   K L++   + +  V +E SSHGL Q+R++ 
Sbjct: 139 KIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNFFLKKNINTVVMEVSSHGLHQNRVNN 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I   +  F+NL +DHIDYH+    Y  +K +LF +L       II  DD   K  +K+  
Sbjct: 199 INFFSAIFSNLSQDHIDYHKNMMQYEQSKWKLFSKL--NVYKYIINYDDVIGKNWIKKIP 256

Query: 262 NAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           N+           KF    +++K +   +   +++IS           + GEF + N L+
Sbjct: 257 NSIIVSTKKNSIKKFKNLKMYVKDIFFHYFGTKLSISSSWGSCVINTKIFGEFNINNLLL 316

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +    + +G +   +    E L +  GR +      +  R+ VDYAHT ++LE +L  I+
Sbjct: 317 SFVALLTLGYNFKSLANVAENLTMPNGRMKIFYV-KKIPRVIVDYAHTPDALEKVLSAIK 375

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGI 436
                 I  +FGCGGDRD+ KR +MGKI  DL  I I+ T+DNPRSE   KI  +I  GI
Sbjct: 376 LHFKKNIWSIFGCGGDRDKSKRRVMGKIC-DLYSINIILTNDNPRSESETKIFNDIKIGI 434

Query: 437 PGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              + K N    R  AI+ AI+  N++D++++ GKGHE  H V   +K    D  ++ +I
Sbjct: 435 KN-LNKVNIIPSREHAIKFAIDNSNEKDIVLILGKGHEE-HQVFKYKKVFFSDQILVNKI 492

Query: 493 L 493
           L
Sbjct: 493 L 493


>gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia
           minopimelate ligase [Stenotrophomonas maltophilia K279a]
          Length = 502

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 148/455 (32%), Positives = 209/455 (45%), Gaps = 39/455 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G  FVAI G    G  F+ QA A GA  I+       +  +       P L  
Sbjct: 29  DSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGASVILFEPPAPAELPAPADAIAVPGL-- 86

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
              R  +   A + +G    ++  + VTGT+GK+S    + Q     G  S  IG     
Sbjct: 87  ---RARMGAMADQFHGAPSRSMAMVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAG 143

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +    +    TTP  + +   L+ L   G   V++E SSH LDQ R+D +      FTNL
Sbjct: 144 LYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTNL 203

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--------------K 258
            RDH+DYH    +Y  AK RLF    P    A+I  DDA+  ++               +
Sbjct: 204 TRDHLDYHGDMASYGAAKARLFHR--PGLKAAVINLDDAFGGQLFAGLPAGVQPIGLSSR 261

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A +A  R  ++   G+ I  + V            ++G+      PL G F V N L  
Sbjct: 262 GATDASVRAEALQLDGRGIAFELV------------IDGQRAAVQSPLLGRFNVDNLLAV 309

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG   A G     + E L  L  + GR   +G       + VDYAHT ++LE  L ++  
Sbjct: 310 AGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPDALEQALDSLHG 369

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              G +  VFGCGG+RD GKRP M  IA  LA+  IVTDDNPR ED + I A+I+ G   
Sbjct: 370 HLQGTLFCVFGCGGERDTGKRPQMATIAERLANKVIVTDDNPRGEDGDVIVADILAGFTD 429

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                 + +R  AI  A++     D++++AGKGHE
Sbjct: 430 ASAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHE 464


>gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
 gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
          Length = 503

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 151/475 (31%), Positives = 231/475 (48%), Gaps = 45/475 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ DSR +++G +F A+ G   DGH F+  A+ +GA A+V            + R 
Sbjct: 24  RVRLLAYDSRDVESGALFFALPGLHTDGHRFVEDALGRGAVAVVHERELP------SYRE 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               L V N R+ LS  ++  YG HP     +  VTGT GKSS   F+ Q+ + SG+   
Sbjct: 78  GVVYLRVKNARRALSAASAVFYG-HPSQDLEVTGVTGTDGKSSTTYFIYQLLRASGVKVG 136

Query: 146 QIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RL 199
            I  T+  S+  +      R +TP   ++  AL+ +   G TH  VEA+SHGL     RL
Sbjct: 137 CIS-TALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATSHGLSPRTARL 195

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + ++   G  TN+  +H+++H + + Y   K RLF  L P+   A++  DD  S  + +R
Sbjct: 196 EDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGL-PEGGKAVLNLDDPSSGFLAER 254

Query: 260 AHNAGCRVLSVGYQGKFIHLKKV---------CAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              AG     +G +       +V         C +H ++ + + V         P PG F
Sbjct: 255 T-RAGVWGYGLGTREGARLWAEVREESLAGSRCLVHGRETLEVWV---------PFPGRF 304

Query: 311 QVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            V N L A     A    +    L H+  L  VPGR E V    +   + VDYAHT  + 
Sbjct: 305 NVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQPFLVLVDYAHTPGAF 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L  +R    GR+IVVFG  G+RD+ KRP+ G++A   A++ ++TD++PR ED   I 
Sbjct: 364 EKLLPFVRRFVEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVLTDEDPRGEDRMAIL 423

Query: 430 AEIIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            EI  G  G +E        +R EAI  A+ M  + D ++  GKGHE   +   G
Sbjct: 424 REIAAGCEGLVEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKGHERSIVTAEG 478


>gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
 gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
          Length = 478

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 227/475 (47%), Gaps = 24/475 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +  + +I  V++DSR I+ G +FVAI G + DGH FI +AIA G   IVV+   S  +  
Sbjct: 17  KNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIANGTNTIVVTEDVSQNEGI 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             I+     + +      +  F S+        ++ VTGT+GK++ AS +  I +     
Sbjct: 77  NYIKVKDARIALAQISNVVCDFPSKKL-----RVIGVTGTNGKTTTASMISHILEHLNSP 131

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG   T I+    +   TTP    + K L     + + +  VE SSHGL  HRLDGI
Sbjct: 132 CTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVECSSHGLYLHRLDGI 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 F NL  +H+D+H+  + YF+AKM LFE    K    I   DD Y ++   R  +
Sbjct: 192 DFDVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK----IANVDDEYGRKAKARFED 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A     S+  +  F   + V  I  K    I    K+  F+      F VYNA+ A    
Sbjct: 248 A--YTFSLENESDF-KAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIVAV 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G +   + + LE    V  RFEFV  N  G  I +D+AHT  + E I K++      
Sbjct: 301 NLLGYELKDIAKSLESFTGVEARFEFV-KNDMGINIVIDFAHTPKAFENIYKSVP--NDK 357

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----G 438
           R I V+G  GDR +  R  +GKI+ +    ++VT D+P+ +  E I  +I+ GI      
Sbjct: 358 RKIAVYGMSGDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSGIEEENGE 417

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++   +R  AI+ AIEM N  D +++ GKG E    +   EK    + + + E+L
Sbjct: 418 YVRIKDRKSAIKHAIEMANDGDFVLLLGKGQENFIKLKGNEKTPYSEKETVNEVL 472


>gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 491

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 153/479 (31%), Positives = 244/479 (50%), Gaps = 33/479 (6%)

Query: 14  LINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           L+N+L  + M      ++ I ++  DSR +  G +F  I G   DGH F  QAI +G  A
Sbjct: 7   LLNKLPSYEMVGDNNIDQSITDLHMDSREVTQGSLFFCISGYTVDGHDFATQAIEKGTVA 66

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKS 127
           IV       +D +  +    P++ V ++++ +++ +S  Y  +P +   ++ VTGT+GK+
Sbjct: 67  IVAE-----KDLNVAV----PVIKVTSSKRAMAIISSAFY-DYPSSKLHLIGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           +    +++I + +  ++  IG   T+    +D  +    TTP  + L K  S +  +GV 
Sbjct: 117 TTTHLIEKILRDAEKNTGIIG---TMYMKYKDKEVAVNNTTPESLVLQKGFSTMVQEGVN 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LP 239
            V++E SSH L+  R+ G       FTNL +DH+D+H+T + Y  AK  LF +L      
Sbjct: 174 VVTMEVSSHALELGRVHGTHFNVAVFTNLSQDHLDFHETMENYARAKGLLFAQLGNQFSD 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK 298
           K  P  +   D  + ++++        ++S G +G   +   K+          +S+  +
Sbjct: 234 KSQPVAVLNRDDDTFDLLETM--TAAPIISYGIKGNADLKASKIQLHEEGTSFNMSISNE 291

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G F VYNAL AA      GI    + E L  +  V GRFE V        +
Sbjct: 292 SCSVSMKMAGTFSVYNALAAAAAAYVSGIPLQAIGESLSNMDGVAGRFERVEL-EEDFHV 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT +SL+ +L+ I+    G++ VV GCGGDRD+ KRP M  IA +L+D   +T D
Sbjct: 351 IVDYAHTPDSLKNVLETIKEFAKGKVSVVVGCGGDRDKTKRPKMAAIAEELSDFVYLTSD 410

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSEDP  I  ++  G+ G   K    R +AI  AI    K +V+++AGKGHET   +
Sbjct: 411 NPRSEDPVSILKDMESGMKGSSYKVIVERRDAIYEAIRQAKKDEVILIAGKGHETYQTI 469


>gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 478

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 157/498 (31%), Positives = 237/498 (47%), Gaps = 31/498 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++ K     IN +     +  + +I  V++DSR I+ G +FVAI G + DGH FI
Sbjct: 1   MNLTDILDK-----INYIDY--TKNNDSEITNVTNDSRKIKKGGVFVAISGMEFDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AIA GA  IVV+   +  D    I+     + +      +  F S+        ++ V
Sbjct: 54  DKAIANGANTIVVTEDVTEIDDINYIKVKDSRVALAQISNVVCDFPSKKL-----RVIGV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++ AS +  I +        IG   T I+    +   TTP    + K L     
Sbjct: 109 TGTNGKTTTASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVE 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + + +  VE SSHGL  HRLDGI      F NL  +H+D+H+  + YF+AKM LFE    
Sbjct: 169 KKIDNAVVECSSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKK 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K    I   DD Y ++   R  +A     S+  +  F   + V  I  K    I    K+
Sbjct: 229 K----IANVDDEYGRKAKARFEDA--YTFSLENESDF-KAENVELIDGKMHFEI----KN 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F+      F VYN++ A      +G +   + + LE    V  RFEFV  N  G  I 
Sbjct: 278 VKFVLNRFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFV-KNEMGINIV 336

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +D+AHT  + E I K++      R I V+G  GDR    R  +GKI+ +    ++VT D+
Sbjct: 337 IDFAHTPKAFENIYKSVP--NDKRKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVTTDD 394

Query: 420 PRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           P+ +  E I  +II GI      ++   +R  AI+ AIEM N+ D +++ GKG E    +
Sbjct: 395 PKFDTYENIADDIISGIEEENGEYVRIKDRKSAIKHAIEMANEGDFVLLLGKGQENFIKL 454

Query: 476 TNGEKKMSVDCDIIREIL 493
              EK    + + + E+L
Sbjct: 455 KGNEKTPYSEKETVNEVL 472


>gi|331696615|ref|YP_004332854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326951304|gb|AEA25001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 501

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 156/482 (32%), Positives = 239/482 (49%), Gaps = 29/482 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   +  +  ++ G +F A+ G++  G  F   A+A GA AI+   A + +   A  +
Sbjct: 25  RPVTGATLRASDVRPGDLFAALPGSRAHGADFTAAALAAGAVAILTDPAGAAR--EAVAQ 82

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P+LV +  R+ L   A+R+YG      +++ VTGTSGK++V   ++      G ++ 
Sbjct: 83  AAVPVLVHEAPRRVLGDLAARIYGDPTARLDVVGVTGTSGKTTVGHMLEAGLAAGGRATG 142

Query: 146 QIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G  +T    A+   L TTP    L    + ++ +GVT V++E SSH L   R+ G + 
Sbjct: 143 LLGTVTTRIRGAEAPSLFTTPESPDLQALFAVMAERGVTDVAMEVSSHALALDRVAGTRF 202

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA----IIYADDAYSKEVMKRA 260
              +FTNL +DH+D+H+    YF AK  LF+   P    A    ++  DD + + +  R 
Sbjct: 203 SVAAFTNLSQDHLDFHRDMDDYFEAKALLFD---PSRQGAARRRVVCVDDEWGRRLADR- 258

Query: 261 HNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           H     V + G   +  + +H          Q    +  G        LPG + V NALV
Sbjct: 259 HPDAVTVATTGPADWTAESVHQDD----DGTQSFVAARPGGTVPVRLRLPGRYNVANALV 314

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A     A G+ + +    L +L  VPGR + V    +   + VDYAH   ++  +L  +R
Sbjct: 315 ALACLDAAGVPAEVAAPRLAEL-AVPGRMQRVDAG-QDFLVVVDYAHKPAAVGALLAALR 372

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               GRI+ V GCGGDRD+GKRP+MG IA   +D+ +VTDDNPR+EDP  IR  +  G  
Sbjct: 373 GQVGGRIVTVLGCGGDRDRGKRPLMGAIAAAGSDLLVVTDDNPRTEDPAAIRRAVREGAE 432

Query: 438 G------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   +E G+R  AI  A+      D +VVAGKGHE    + +G K    D D +R 
Sbjct: 433 AEPRRGEIVEIGDRRAAIAAAVAAARPGDAVVVAGKGHEKGQEI-DGVKHPFDDVDEVRA 491

Query: 492 IL 493
            L
Sbjct: 492 AL 493


>gi|260220010|emb|CBA27120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 499

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 239/475 (50%), Gaps = 46/475 (9%)

Query: 23  MQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV----SSAY 77
           ++W R R +  +++DSR   +   F+A  G   D   F+  A+A+GA A +     + A+
Sbjct: 11  VEWLRSRGVQGLTTDSREATSVDAFIAWPGAATDPRRFVAPALAKGALACLAEQSGAEAF 70

Query: 78  SLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
            L       +S     + PI             A+  YG    +  +++VTGT+GK+S A
Sbjct: 71  ELDPDRTGFYSGLKAGSGPI-------------AAAFYGMPSRDLAVMSVTGTNGKTSTA 117

Query: 131 SFVQQ-ICQRSGLSSFQIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            ++ Q + Q  G  +   G   T+        +    TTP P+ L K L   + QG+   
Sbjct: 118 WWLAQALGQVGGKEAMPCGVIGTLGVGRPPALKATGFTTPDPVLLQKTLRSFTEQGLKAC 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++EASS G+++ R+ G  +    FTN  +DH+DYH +  AY+ +K  LF     K   A+
Sbjct: 178 AMEASSIGIEELRMAGTVIHTAIFTNFTQDHLDYHGSMAAYWASKRALFSWDGLKA--AV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
           +  DD    E+     +    V +VG Q +   L      H+ Q +   V EG++   L 
Sbjct: 236 VNVDDDKGAELAAELASTSLDVWTVGVQ-RDARLVARGVTHSAQGLAFDVVEGRESVRLQ 294

Query: 305 P-LPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             + G + V N L  +AA   + I + SA+  +    L  VPGR E VG +S    + VD
Sbjct: 295 SHVIGSYNVSNLLGVIAAMRTVGIPLQSAV--QSCATLLPVPGRMECVGGDS-APLVAVD 351

Query: 362 YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YAHT ++L   L+ ++ +     G++  VFGCGGDRD  KRP+MG +A   ++ A+VT D
Sbjct: 352 YAHTPDALAQALRALQPVAQARGGKLWCVFGCGGDRDASKRPLMGAVAAAQSEHAVVTSD 411

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSE PE I A+I+ G+   P    + +R  AI  AI   + +DV+++AGKGHE
Sbjct: 412 NPRSEKPEAIVAQILLGMVECPHVDVQVDRAVAIADAIRSADARDVILLAGKGHE 466


>gi|78185154|ref|YP_377589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
 gi|78169448|gb|ABB26545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
          Length = 502

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 160/481 (33%), Positives = 238/481 (49%), Gaps = 41/481 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+SDSR    G +FV + G + DG LF  QA+  GA A V+  A +  D       
Sbjct: 24  QIEAVTSDSRLAGPGSLFVGLPGERVDGGLFWRQALNAGAAAAVIGPAAAASDPPGD--H 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +  ++V +     L   AS  + +  E   +L VTGT+GK++    ++ +    G S+  
Sbjct: 82  DQVLVVSEPVASTLGELASSFWNRPSERMALLGVTGTNGKTTTTYLIEHLALACGRSTAL 141

Query: 147 IG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            G      P  ++++       TT     L   LS  +S G    ++E SSH L QHR+ 
Sbjct: 142 FGTLVNRWPGHSVTATH-----TTAFADRLQAQLSEAASAGSQLAAMEISSHALAQHRVA 196

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSKEVMK 258
           G +     FTNL +DH+DYH + Q YF AK  LF E L +  PA  ++  DD +  ++ +
Sbjct: 197 GCRFAGAVFTNLTQDHLDYHLSMQDYFEAKALLFSEALLQAGPARAVVNGDDPWGAKLAE 256

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQV 312
           R       + S  ++  F        + +    +  V G+      +  F  PL G F +
Sbjct: 257 R-------LGSQCWRSSFTDSTAELRMEDLSMTSRGVSGRLISPLGEGAFQSPLLGRFNL 309

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-----GTNSRGGRIYVDYAHTSN 367
            N L A G+ +   +    +L  +     VPGR E V      TNS    + VDYAHT +
Sbjct: 310 MNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAMTNSLP-TVLVDYAHTPD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            LE  L   R    G++I VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+EDP++
Sbjct: 369 GLENALAAARPFAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTEDPQR 428

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +++ GIP  +++    +R  AI   I   +  D+++VAGKGHE   I+  G +K+  
Sbjct: 429 ILEDVLQGIPDGVDRVVESDRGVAIAQTIAEADAADLVLVAGKGHEDYQIL--GTEKVHF 486

Query: 485 D 485
           D
Sbjct: 487 D 487


>gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. novicida U112]
 gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
 gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella novicida U112]
 gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
          Length = 479

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 249/492 (50%), Gaps = 27/492 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I+ +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
            ++V++ ++  +D          +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  -SLVLTDSHQFED-------QKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYKTISYY--KKYQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AI+
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAIV 229

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD Y + +          V L   Y   +I  K +  I  K +  +   G+   ++  
Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287

Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            L G+F + N  L  A L   +  D  L L +++    V GR E +  ++   +I +DYA
Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E
Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E I  +I  G       I   +R +AIR +IE  N+ D++++AGKGHE  ++  NG K
Sbjct: 404 SIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 462

Query: 481 KMSVDCDIIREI 492
           +   +  II+ +
Sbjct: 463 EYFDERKIIKNM 474


>gi|153815690|ref|ZP_01968358.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
 gi|145846931|gb|EDK23849.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
          Length = 488

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 239/461 (51%), Gaps = 37/461 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++  +++DSR +++G +FV I G   DGH ++     +GA AI+       +D  A  
Sbjct: 20  ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKGAAAIIAE-----RDIEAP- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
                ++  +NTR  L+L ++  +G +P   L V G +G     +    ++ I +  G  
Sbjct: 74  -KGVTVIKAENTRYALALMSAAYFG-YPAEKLKVIGITGTKGKTTTTYLIRSILEGVG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             ++G   TI +   D ++    TTP    + +  + +  +G   V +E SS GL  HR 
Sbjct: 130 -HKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVMEVSSQGLMLHRT 188

Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            GI    G FTNLG+DHI  + H+  + Y   K  LF++        I   DD Y  ++ 
Sbjct: 189 AGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQQC----KLGIANIDDPYYADIF 244

Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEGK-DFDFLFPLPGEFQVY 313
           +    A C+V + G+  K  +  + V  +     + +S  V GK DFD    +PG+F VY
Sbjct: 245 R---GATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDVEIDIPGKFSVY 301

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L A  +C   G+ S  + E L+  HV  GR E +   S    + +DYAH + SLE +L
Sbjct: 302 NSLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKV-SDDFTLMIDYAHNAMSLESLL 359

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             ++     R++ VFGCGG+R + +R  MG+++  LAD+ I+T DNPR E+P++I  +I 
Sbjct: 360 TTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTIITSDNPRFEEPQEIINDIK 419

Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            GI      ++E  +R EAI+ AIE     DV+V+AGKGHE
Sbjct: 420 VGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHE 460


>gi|158316860|ref|YP_001509368.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
 gi|158112265|gb|ABW14462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
          Length = 513

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 210/398 (52%), Gaps = 21/398 (5%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           R   P+LV D+ R+ L+  A+ +YG       +L VTGT+GK++ A  +    + +G ++
Sbjct: 97  RLAVPVLVTDDPRRDLAPAAAWIYGDPSSALTLLGVTGTNGKTTTAFLLDAGLRAAGYTT 156

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T ++     +  TTP    L   L+ +  +GV   S+E SSH L QHR+D ++
Sbjct: 157 GLLGTVQTRVAGTVVPSVRTTPESGDLQALLATMVERGVGAASMEVSSHALAQHRVDALR 216

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNL +DH+D+H T + YF AK  LFE    + + A++  DD + + +     +A
Sbjct: 217 FAGAAFTNLSQDHLDFHPTMEDYFAAKAALFEPA--RSAAAVVCVDDDWGRRLAALRPDA 274

Query: 264 GCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             R  SV G    +     V          +  +G   D    LPG F V NAL A  L 
Sbjct: 275 --RTYSVTGRPADWWPEDVVAGPGGSVFRALGPDGAKADLSLALPGRFNVANALGALALL 332

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTI 379
            A+G+      E +  L  VPGR E +      G+ +   VDYAHT  ++E +L  +R I
Sbjct: 333 AAVGVPLEAAAEGISSLPGVPGRMERI----DAGQPFLALVDYAHTPGAVETLLATVRPI 388

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
            +GR++VV GCGGDRD+ KRP+MG  A  LAD+A+ T DNPRSEDP +I  +++ G  G 
Sbjct: 389 VTGRVVVVLGCGGDRDRAKRPLMGAAAARLADLAVFTSDNPRSEDPARILEQMLAGARGA 448

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 + + +R  AI  A+      D ++VAGKGHE+
Sbjct: 449 PGAGEIVVEPDRASAIALAVGAAGPTDAVIVAGKGHES 486


>gi|183983188|ref|YP_001851479.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
 gi|183176514|gb|ACC41624.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
          Length = 521

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 224/467 (47%), Gaps = 42/467 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIR 87
           I  ++  ++ +Q G +F A+ G+   G      AI +GA A++   A  +   SA   + 
Sbjct: 44  ITGMTLRAQAVQPGDLFAALAGSATHGARHAADAIERGAVAVLTDPA-GVTAISALGCVP 102

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSS 144
              P+LV    R  L   A+ +YG HP + L V G +G S   +    V+   + +G  +
Sbjct: 103 GTVPVLVHPAPRGVLGEAAALVYG-HPSDRLTVVGITGTSGKTTTTYLVEAGLRAAGRVA 161

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     I      + LTTP    L   L+ +  +GV  V +E SSH L   R+DGI+
Sbjct: 162 GLIGTIGIRIDGADIPSTLTTPEAPALQAMLAAMVERGVDTVVMEVSSHALTLGRVDGIR 221

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHN 262
              G FTNL RDH+D+H T   YF AK  LF+        +++   DD   + +  RA  
Sbjct: 222 FAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPASALRGHSVVVCIDDEAGRAMADRAGA 281

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQV 312
           A    ++V   G+  H +            +   G++F  L P          LPG + V
Sbjct: 282 A----ITVSATGQPAHWRA------TDVAPVGAGGQEFTALDPAGVGHRVRIGLPGHYNV 331

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLE 370
            N L+A  +  A+G+        L +  V PGR E V    RG      VDYAH   +L 
Sbjct: 332 ANCLLALAILDAVGVSPEQAAPGLRETRV-PGRLEQV---DRGQDFLALVDYAHKPGALR 387

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L  +R     R+ VVFG GGDRD GKR  MG+IA +LAD+ +VTDDNPR EDP  IR 
Sbjct: 388 EVLSTLRNPQR-RLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTDDNPRGEDPGAIRR 446

Query: 431 EIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            I+ G          +E  +R EAI  A++     DV+++AGKGHET
Sbjct: 447 TIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHET 493


>gi|223984264|ref|ZP_03634409.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
 gi|223963749|gb|EEF68116.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
          Length = 459

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 220/451 (48%), Gaps = 32/451 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +S  ++ I    +FVA+ G++ DG         Q A+A+     Y L D     + 
Sbjct: 11  ELTALSDRAQEIGRDGLFVALRGDRADGR--------QWADAVRSRGGYVLSD-----QP 57

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               +V  + R    L     Y  +P     ++ VTGT+GKS+V   +  +   +G    
Sbjct: 58  GERTIVHPDPRAVYPLLLQAYY-DYPALKLTMIGVTGTNGKSTVTQLLYDMLSGAGRRCC 116

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     I    + +  TTP P+ L + L     +G+  V +E SS  L  HR+DG+  
Sbjct: 117 LIGTGRIVIGDEVRFSPNTTPDPLTLTRLLDEAVRRGIDTVIMEVSSQALAMHRVDGLLF 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL +DH+DYH+T +AY  AK  LFE+L  K + AI+  DD  ++  + + H   
Sbjct: 177 DLAVLTNLKQDHLDYHKTLKAYQRAKFMLFEKLKEKGT-AILNQDDPVTQRWLSQLHRP- 234

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V + G       +  V        +T  + G   +   PL G F + N   A     A
Sbjct: 235 --VFTYGRDSVNFRIHPVA--ETLDSITFDLNGHRVEA--PLAGAFNMRNLTAALACGFA 288

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--- 381
           + I  A +LE      +  GR E V          VDYAHT+++LE +LK+ R +     
Sbjct: 289 LDIPWAAMLEFAHHAALPEGRMEIVCRQPVLA--VVDYAHTASALEAMLKHWRKVADQRH 346

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            R+ VVFGCGGDR+  KRP+MG+IA   AD  ++ DDNPR+EDP++I A+I  G  G  +
Sbjct: 347 TRLSVVFGCGGDREADKRPLMGRIACAYADQVVLCDDNPRTEDPDRILAQIAAGCDGSQK 406

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
              +R EAI+  ++     D++VVAGKG ET
Sbjct: 407 IIRDRAEAIKFVLDGAQTDDIIVVAGKGGET 437


>gi|167838009|ref|ZP_02464868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis MSMB43]
          Length = 514

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 237/492 (48%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A       
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAGGLDPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGLPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T  AY  AK +LF         AI+  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLRCAIVNRDDPVGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLP---------GE 309
              RV ++ Y    I  ++  A  +++ V  +V     G  F    P           G 
Sbjct: 255 LAGRVRTIAYG---IDARRQAADADRELVATNVRATATGTAFRLTSPWGEADVEVGTLGT 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  +EKL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIEKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+          +R  AI  A+    ++DV+++AGKGHE+   +  G+K+
Sbjct: 432 PQKIIDQIVAGMQDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHESTQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|302036127|ref|YP_003796449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
 gi|300604191|emb|CBK40523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
          Length = 502

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 157/494 (31%), Positives = 238/494 (48%), Gaps = 49/494 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +++ DSR +  G +FVA+ G + DGH F+ + +A GA A+VV  +  +          
Sbjct: 27  IADLTDDSRKVGPGSLFVAVQGERVDGHQFLDRVVAAGAAAVVVQRSGDV--------GA 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V ++R  L +  SR YG  P + L + G +G +   +    +      +  Q+G 
Sbjct: 79  IPCVRVQDSRAALGILGSRFYGD-PSSSLRMVGVTGTNGKTTTTYVVKTMLEAARRQVGL 137

Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             T++       +    TTP  + L K  + +    +  V +E SSH L   R  G +  
Sbjct: 138 IGTVAYLVGKESIPASHTTPGALELQKLFARMREARLDTVVMEVSSHALALDRTAGSEFD 197

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260
              FTNL +DH+D+H   + YF AK++LF EL     +     AII ADD +   +    
Sbjct: 198 VAVFTNLTQDHLDFHLDMERYFQAKLKLFAELGRAGAVKPRKRAIINADDPWGARI---- 253

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311
             + C V    Y      L +   I+    V +S  G  F    P         L GE  
Sbjct: 254 -RSACTVPVWTYG-----LHQQADIY-ADGVRLSPAGTSFTLRSPAGTCPIKSRLVGEHN 306

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L A G+ +  G+    V   +E +  VPGRFE V    +   + VDYAHT ++L  
Sbjct: 307 VSNLLAAIGVVLHEGLTLDQVRSAVETVTNVPGRFELV-EAGQDFSVVVDYAHTEDALVR 365

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L   + + +GRII VFGCGGDRD+ KRP MG+ A+  +D+ I+T DNPR+EDP  I  E
Sbjct: 366 LLTAAQALRTGRIITVFGCGGDRDRTKRPKMGRAAVKYSDVVILTSDNPRTEDPAAILRE 425

Query: 432 IIHGIP-GFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           +  G+     E+G        +R EAI  AI      D++++AGKGHE   IV   +   
Sbjct: 426 VEVGVKEALAERGHVRYRMVADRREAIEAAIREAKPGDMVLIAGKGHEDYQIVGTTKHHF 485

Query: 483 SVDCDIIREILGLI 496
             D ++ R+ +G +
Sbjct: 486 D-DREVARDTIGAL 498


>gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
 gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
          Length = 490

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 165/501 (32%), Positives = 246/501 (49%), Gaps = 43/501 (8%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L+ +L    +Q  E+ ++ E+++DSR +  G  FV I G   DGH ++ +   +GA+A+
Sbjct: 5   DLLERLEYEVVQGSEKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYVKEVAEKGAKAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS--- 128
           +V       D          ++ VD+TR  L+L ++  +G +P   L V G +G      
Sbjct: 65  IVEKQVEAPD-------GVTVIHVDDTRYALALMSAAYFG-YPAEQLKVIGITGTKGKTT 116

Query: 129 ----VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
               V S ++ +  + GL    IG   T I   A     TTP    + K    +   G  
Sbjct: 117 TTYMVKSILEGVGHKVGL----IGTIETLIGGKAIPASNTTPESFTIHKYFKEMVDAGCD 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241
            V +E SS GL  HR  GI+   G FTNLG DHI  + H+  + Y   K  LF +     
Sbjct: 173 CVVMEVSSQGLMLHRTAGIEFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGILFTQC---- 228

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEG 297
              I   DD + ++V +   NA CR  + G+  K   L+     H  +     V   V G
Sbjct: 229 RLGIANVDDRWFEDVFR---NATCRTETFGFSEK-ADLRATDVEHISRPGYLGVKYHVSG 284

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             DFD    +PGEF VYN+L A  +C    +  A  ++   K+  V GR E V   S   
Sbjct: 285 LMDFDVEIDIPGEFSVYNSLTAIAVCRHFDV-PAEEIKKALKVAKVKGRIEMVKV-SDDF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH + SLE +L  +R    GR++ VFGCGG+R + +R  MG+++  LAD  ++T
Sbjct: 343 TLMIDYAHNAMSLESLLATLRDYDPGRLVTVFGCGGNRSRTRRFEMGEVSGKLADFTVIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR E+P+ I  +II GI      +    +R EAIR AIE     DV+++AGKGHET 
Sbjct: 403 SDNPRFEEPQAIIDDIITGIERTDGKYTAICDRKEAIRYAIENGRPGDVIILAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +   +  M  D  +I E+L
Sbjct: 463 QEIKGVKYDMD-DRVLIAEVL 482


>gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
          Length = 486

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/465 (32%), Positives = 244/465 (52%), Gaps = 46/465 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR    G IF+A  G   +G+ +  QA+  GA AI+ SS Y+   F + ++  
Sbjct: 26  VRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAIAIL-SSLYN--PFLSVVQ-- 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              +V ++     +  A+R Y    +  +++ VTGT+GK++V++  +++ +  G  +  +
Sbjct: 81  ---IVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSALARELMEYKGRCTGLV 137

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI     ++R+    TTP  I L K  + +  Q ++   VE SS GL   R+   +
Sbjct: 138 G---TIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVSSIGLALGRVRETE 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +AG  TN+  DH+D+H + + Y  AK +LF   LP+   A++ +D  Y++  ++ +   
Sbjct: 195 FLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVS-LPEHGVAVVNSDCEYAQSFLEISPAR 253

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYN 314
           G     V Y    +H +   A +    +  S  G  FD L+          L GE  VYN
Sbjct: 254 G-----VSYA---VHQE---ADYRAVNLKFSSLGSTFDILYQGNVFSCETSLVGEHNVYN 302

Query: 315 ALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            L A  +   I G D A ++ ++  L    GR E V +      IY+DYAHT ++L+ + 
Sbjct: 303 VLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGP--CPIYIDYAHTPDALDNVC 360

Query: 374 KNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           K +  +    GR+I+VFGCGGDRD  KRPIM K+A +    ++VT DNPR+EDP++I A+
Sbjct: 361 KILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVA-ETYGFSVVTSDNPRTEDPDQIIAD 419

Query: 432 IIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           I  G     ++ + +R  AI  AI M   +D+++VAGKGHE   I
Sbjct: 420 ICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEVYQI 464


>gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
 gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
          Length = 505

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 146/462 (31%), Positives = 225/462 (48%), Gaps = 37/462 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +    +FVAI  +      +I  A+AQGA A++V +  +       +  +  +  +
Sbjct: 41  DSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAA-----EGVELDKQVFAI 95

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            N  + +   A    G HP    +++ +TGT+GK+S A  + Q  Q+ G++S  IG   T
Sbjct: 96  ANLHEVIGRMADAFVG-HPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIG---T 151

Query: 153 ISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           + +     R     +TTP    + + L      GV +V++E SSH L+Q R+DG+     
Sbjct: 152 LGAGITGERRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQRRVDGVAFNIV 211

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTN  RDH+DYH T + Y   K ++F   LP  + A++  DDA ++         G R 
Sbjct: 212 AFTNFTRDHLDYHGTMEEYAAQKAKIF--TLPGVTTALLNLDDAAAENHFHNTLPEGMR- 268

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
             +G   +      V A H    V ++ EG +FD +           L G F V N L  
Sbjct: 269 -GIGMTSRGHSEASVRADH----VQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTC 323

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A +  A GI+   + E L  L  V GR   +  N +   + VD  HT +++   +  +R 
Sbjct: 324 ATVLWAQGIEPQAIAEALAPLEPVLGRMTRIRENDKLPLVVVDAGHTPDAVRQAVTALRE 383

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
               RI+ VFG  GDRD GKRP M +I  + +D+ +VTDD+  +ED ++I A I  G   
Sbjct: 384 SGHTRIVTVFGATGDRDPGKRPEMARIVEEGSDLIVVTDDDVHNEDGDQIVAHIRAGFEH 443

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
               IE  +R  AI  AI+  N  DV+++ GKGHE   I+ N
Sbjct: 444 PERVIEIRDRASAIAYAIDAANPDDVVLLQGKGHEPYQIIGN 485


>gi|167760428|ref|ZP_02432555.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
 gi|167661927|gb|EDS06057.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
          Length = 504

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 241/487 (49%), Gaps = 44/487 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++ ++ +DSR +  G +FV I G   DGH +I    A+GA A++V            I
Sbjct: 36  EVEVTQLINDSRKVTEGSVFVCISGAVSDGHKYIDDVAAKGAAAVIVERPVDAPKGLTVI 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R       VD+TR  L+L ++  +G +P   L V G +G     +    V+ I +  G  
Sbjct: 96  R-------VDDTRYALALMSAAYFG-YPAEKLKVIGITGTKGKTTTTYMVKSILEGVG-- 145

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             ++G   TI +   D  +    TTP    + +  + ++  G   V +E SS GL  HR 
Sbjct: 146 -HKVGLIGTIEAIIGDKAIPANNTTPESYTIHQYFAQMAEAGCDSVVMEVSSQGLMLHRT 204

Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            GI+   G FTNLG DHI  + H+  + Y   K  LF +     +  I   DD + ++V 
Sbjct: 205 AGIQFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGILFTQC----NLGIANVDDRWYEDVF 260

Query: 258 KRAHNAGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           K   NA C+V + G+  K         H+ +   +  K QV+  +   +FD    +PG+F
Sbjct: 261 K---NATCKVETFGFSEKADLRATDVQHISRPGYLGVKYQVSGLM---NFDVEIDIPGDF 314

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            VYN+L A  +C    +    +   L K+  V GR E V   S    + +DYAH + SLE
Sbjct: 315 SVYNSLTAIAVCRHFDVPVENIKTAL-KVAKVKGRIEMVKV-SDDFTLMIDYAHNAMSLE 372

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L  +R     RI+ VFGCGG+R + +R  MG++A  L+D  ++T DNPR E+P+ I  
Sbjct: 373 SLLLTLRDYHPQRIVTVFGCGGNRSKTRRYEMGEVAGRLSDFTVITSDNPRFEEPQAIID 432

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           +II G+      +I   +R EAI+  IE     DV+++AGKGHET   +   +  M    
Sbjct: 433 DIIVGMKKTDGKYISICDRKEAIKYVIENGQPGDVIILAGKGHETYQEIKGVKHDMDERV 492

Query: 487 DIIREIL 493
            +IREIL
Sbjct: 493 -LIREIL 498


>gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Weiss]
 gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum MopnTet14]
 gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 483

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/465 (32%), Positives = 244/465 (52%), Gaps = 46/465 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR    G IF+A  G   +G+ +  QA+  GA AI+ SS Y+   F + ++  
Sbjct: 23  VRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAIAIL-SSLYN--PFLSVVQ-- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              +V ++     +  A+R Y    +  +++ VTGT+GK++V++  +++ +  G  +  +
Sbjct: 78  ---IVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSALARELMEYKGRCTGLV 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI     ++R+    TTP  I L K  + +  Q ++   VE SS GL   R+   +
Sbjct: 135 G---TIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVSSIGLALGRVRETE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +AG  TN+  DH+D+H + + Y  AK +LF   LP+   A++ +D  Y++  ++ +   
Sbjct: 192 FLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVS-LPEHGVAVVNSDCEYAQSFLEISPAR 250

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYN 314
           G     V Y    +H +   A +    +  S  G  FD L+          L GE  VYN
Sbjct: 251 G-----VSYA---VHQE---ADYRAVNLKFSSLGSTFDILYQGNVFSCETSLVGEHNVYN 299

Query: 315 ALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            L A  +   I G D A ++ ++  L    GR E V +      IY+DYAHT ++L+ + 
Sbjct: 300 VLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGP--CPIYIDYAHTPDALDNVC 357

Query: 374 KNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           K +  +    GR+I+VFGCGGDRD  KRPIM K+A +    ++VT DNPR+EDP++I A+
Sbjct: 358 KILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVA-ETYGFSVVTSDNPRTEDPDQIIAD 416

Query: 432 IIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           I  G     ++ + +R  AI  AI M   +D+++VAGKGHE   I
Sbjct: 417 ICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEVYQI 461


>gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 497

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 228/460 (49%), Gaps = 24/460 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +++++ DSR +    +F  I G   DGHLF  +A   GA   V S     Q        +
Sbjct: 24  VDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKELGANVFVASKPIKEQ------VGD 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +P++ V +  + ++LFA+  YG   EN+  + VTGT+GK++V   V  + +  G  +  I
Sbjct: 78  SPVIYVKDVTRVMTLFANHFYGYPSENLNMIGVTGTNGKTTVTHMVDYLLEELGKPTALI 137

Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I     + R TTP  + + + L  +   G     +E SSH L   R+ GI    
Sbjct: 138 GTMYRKIGEERIETRNTTPEILTVHETLQKVKEIGGDTCIMEVSSHALQLGRVWGIDYNV 197

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRAH 261
             FTNL  +H+D H+T + Y +AK  LF +L      E P  AI+  D  Y  +    A+
Sbjct: 198 AVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSKNEKPRVAILNRDQEYFGQF---AY 254

Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +    ++S G+  +  I   ++ +        ++V G+    + P+ G F VYN L A G
Sbjct: 255 STSAEIISYGFSEEADIRATEIESNGAMTTFVVTVNGEKIPVMVPMIGLFNVYNVLAAFG 314

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + +  GI     +E + K   V GR + +    +  ++ +D+AHT + LE +L  +  + 
Sbjct: 315 VAMVNGIPLRKAIEKIAKFPGVGGRMQLI-QKGQPFQVIIDFAHTPDGLENVLSTLEEVK 373

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             R+I + G  GG+RD   RP +G+IA + +D  I+T DNPR E  EKI +EI+ G    
Sbjct: 374 INRVITIMGHSGGNRDSSMRPELGEIAFEKSDYVILTADNPRQESLEKIYSEIVSGRKNE 433

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
              +    +R +AI  A+E+  + D+L+ AGKG E   ++
Sbjct: 434 NTPYECVDDRKQAIERALELAQEGDILLFAGKGVEPYQVI 473


>gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens
           200]
          Length = 500

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/469 (30%), Positives = 230/469 (49%), Gaps = 34/469 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++  NE++ DSR I+ G +F+A+ G++ DG  FI +A+  GA  ++V +  + Q     +
Sbjct: 17  DQSFNELTLDSRAIRRGDVFLALPGHRVDGRQFIDKALDLGAAGVLVHTDDADQHGKVLL 76

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKH-----PE-NILAVTGTSGKSSVASFVQQI 136
             N      I      R+  ++ A R    H     P   I+ +TGT+GK+S +  + Q+
Sbjct: 77  GDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLGIIGITGTNGKTSTSQLIAQL 136

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  +  +G     +     D+  TT   I L + L    +QG +  ++E SSHGL 
Sbjct: 137 VTSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFEAQGASVCAMEVSSHGLV 196

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+D +      FTNL RDH+DYH   ++Y  AK  LF          ++  DD   + 
Sbjct: 197 QGRVDAVPFDVAVFTNLTRDHLDYHGDMESYTAAKQSLFR--FSTLGHGLLNLDDPVGET 254

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +    +   ++     +G      +  A + K       +G     ++P  GE Q+++ 
Sbjct: 255 WLIELKDMAAQIWGFSIEGH-----QAAAFYTKN-TQFDDQGVSATLVWP-EGETQIHSP 307

Query: 316 LVAAGLCIAI----------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L+ A     +          G D   + E ++ L  V GR E   T +    + VDYAHT
Sbjct: 308 LLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERF-TTADNITLVVDYAHT 366

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  +VT DN RSEDP
Sbjct: 367 PDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAAEQYADRIMVTSDNARSEDP 426

Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +I ++II G+      + + +RI AI+  + +    D++++AGKGHET
Sbjct: 427 AQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLILLAGKGHET 475


>gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 487

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 238/457 (52%), Gaps = 37/457 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +++ DSR +  G +F A  G++ DGH F+  AIA+GA A++V    +L         +
Sbjct: 24  IADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIARGAVALLVQHEVAL---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P LVV + R  +    +  +G+  E  +++ +TGT+GK++ + F+  I   +G  +  I
Sbjct: 75  IPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTTTSYFIDSILSLAGRRTGLI 134

Query: 148 GPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           G     + F   NR    TTP    L + L  +   GV  V +E SSHG+DQHR+DG   
Sbjct: 135 GTIE--ARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVMEVSSHGIDQHRIDGTSF 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNA 263
             G FTNL  +H+DYH T + Y+ AK +LF   LP+ +  A+I  D  +   +  +    
Sbjct: 193 RIGVFTNLSPEHLDYHGTIEQYYAAKAQLF---LPERTKQAVIGTDTEWGVRLATQ---- 245

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEG-KDFDFLFPLPGEFQVYNALVAA 319
             R+ +V Y        +V  +   +     T+ V G + +    P+ G    YNA  A 
Sbjct: 246 -VRIPAVTYGPAPFSDYRVEDVRYDEYGTIFTVVVGGRRRWRLRVPIYGIHNAYNAAAAV 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +  A+GI+   +   L + H V GRF+ +    +   + VDYAHT +SL  ++   R +
Sbjct: 305 AVAEALGIEGDTIERGLAECHQVAGRFQRIDAG-QPFTVVVDYAHTPDSLRALIATARAL 363

Query: 380 T-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
           +  GR+I+V G  G RD+ KRP +G+ A   AD+AI+T DNP  EDP +I A+++ G   
Sbjct: 364 SPKGRVILVAGARGRRDRLKRPELGRAAA-TADVAILTADNPGDEDPGEIVAQLLAGTLD 422

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                 I + +R  AI  AIE+  + DV+++ G+GHE
Sbjct: 423 VDHKQIIVELDRRGAIGHAIEIAEESDVVLIVGRGHE 459


>gi|149917684|ref|ZP_01906180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
 gi|149821466|gb|EDM80866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
          Length = 483

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 225/470 (47%), Gaps = 29/470 (6%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99
           + AG + V I  +   G      A+AQGA A+       L D      S+  I+ V    
Sbjct: 24  VGAGDVAVWIPSHPRMGLTRPEDALAQGAAAV-------LTDDRELAASDPRIVFVPALA 76

Query: 100 KFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
             +S  A+  YG HP     ++AVTGT GK+S   F  Q+  R GL +  +G T  +   
Sbjct: 77  DEVSGLAASFYG-HPGRALKVVAVTGTCGKTSTTFFTAQLADRVGLGAAVMG-TLGMGRL 134

Query: 157 A--QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
              +D+  TTP    L + L+    +G+  V++EASS GL+  RL G+ + AG FT LGR
Sbjct: 135 GDLRDSGHTTPQHAMLQRELARYVDEGLGLVAIEASSAGLEMDRLGGVPIDAGVFTMLGR 194

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D H+T +AY  AK RLF+   P+   A++ ADD   +   +R     C V   G + 
Sbjct: 195 DHLDRHRTMEAYAAAKWRLFDAYAPEF--AVLGADDPTGEAWARRLRER-CAVTVFGAEP 251

Query: 275 K------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +       +H++ +        V ++    +        G FQ +N   A      +G+ 
Sbjct: 252 RPELDLPRVHIEGLEQQRAGLGVRLASTWGEAAVSIRALGAFQAHNLAAALATLARLGVP 311

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387
              ++   E L   PGR E            +DYAHT  SL   L + R +   GR+  V
Sbjct: 312 WPELVVACEGLSGPPGRMEPYAAPGT-PLCLIDYAHTPESLTFALDSARALAPGGRVWCV 370

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GN 444
           FGCGG RD GKR  MG  A   AD+ +VT DNPR EDPE I A ++ G+         G 
Sbjct: 371 FGCGGGRDSGKRGEMGAAAEGSADVVVVTTDNPRHEDPEAIAAAVVAGMETPSRARVIGE 430

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           R +AI  A++    +DV+VVAGKGHE V I  +   + S D D +   +G
Sbjct: 431 RGQAITRALDEAAPEDVVVVAGKGHERVQIFADRRVEWS-DRDFVAAYMG 479


>gi|120404500|ref|YP_954329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957318|gb|ABM14323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 497

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 226/453 (49%), Gaps = 16/453 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+   +  Q G +F A+ G++  G  +  +A+ +GA A++  +A   +  ++    
Sbjct: 20  QVTGVTLRGQDAQPGDLFAALPGSRAHGGRYAAEAVGRGAVAVLTDAAGEAE-IASRGAP 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P+LV  + R  L   AS +YG+  ++  ++ VTGTSGK++    V+   + +G  +  
Sbjct: 79  DVPVLVHPDPRAVLGELASAVYGRPSQHLRVIGVTGTSGKTTTTYLVEAGLRAAGRVAGL 138

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I    Q   LTTP    L   L+ +  QGV  V +E SSH L   R+DG+   
Sbjct: 139 IGTVGVRIDGRQQPGGLTTPEAPELQALLATMLEQGVDTVVMEVSSHALTLGRVDGVSFA 198

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAG 264
            G FTNL RDH+D+H T + YF+AK RLF+      +  ++I  DD + + +  RA    
Sbjct: 199 VGGFTNLSRDHLDFHPTMEDYFDAKARLFDPACATHAARSVICVDDEWGRAMAARARRP- 257

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V + G         +      +  V +   G        LPG + V N L+A  L  A
Sbjct: 258 VTVSTTGPADWRAEQVRSAGGGAQDFVAVDPAGVHHGLEIGLPGGYNVANCLLAIALLDA 317

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITSG 382
           +G+        +     VPGR E V    RG      VDYAH   +L  +L+ +R   +G
Sbjct: 318 VGVSPEQAAPGVRDA-TVPGRLESV---DRGQPFLALVDYAHKPGALRAVLQTLREQCTG 373

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE----KIRAEIIHGIPG 438
           R+ VVFG GG+RDQGKR  MG++A +LAD+ +VTDDNPR EDP      I A        
Sbjct: 374 RLAVVFGAGGNRDQGKREPMGRVAAELADLVVVTDDNPRDEDPAVIRAAILAGAAGARAE 433

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +E G+R  AI  A       D++++AGKGHE 
Sbjct: 434 VVEIGDRRAAIGHAAGWARAGDIVLIAGKGHEA 466


>gi|300788102|ref|YP_003768393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
 gi|299797616|gb|ADJ47991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
          Length = 514

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 161/465 (34%), Positives = 245/465 (52%), Gaps = 37/465 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +   +  ++H+  G +F A+ G +  G  F  QA+A GA A++  +A +  +  A  
Sbjct: 38  ELTVTGTTLRAQHVLPGDLFAALPGARAHGADFSDQAVAAGAVAVLTDAAGA--ERPALR 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143
            +  PILV  + R  L   A+ +YG+ P    ++L VTGTSGK++ +  V    Q +GL+
Sbjct: 96  DAGVPILVHPDPRAALGEIAAWIYGE-PSLELSVLGVTGTSGKTTTSYLVDAGLQAAGLT 154

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  IG   T+ +    +RL    TTP    L   L+ +  +GVTHV +E SSH L   R+
Sbjct: 155 TGLIG---TVETRIAGDRLVSGFTTPEAPDLQALLAVMLERGVTHVPMEVSSHALALGRV 211

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +G +   G+FTNL +DH+D+H+  Q YF AK  LF+    + +  ++  D A+ + ++  
Sbjct: 212 NGTRFAVGAFTNLSQDHLDFHKDMQEYFAAKSLLFDG---RSTHEVVVVDSAWGQALLT- 267

Query: 260 AHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYN 314
                 + ++V    G +  +           +Q  T+   +G       PLPGEF V N
Sbjct: 268 -----PQTITVTTDPGTEAAWKATDLEATPQGEQTFTLHGPDGARAAARIPLPGEFNVAN 322

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A++AA +    G+    ++  L ++ V PGR E V        + VDYAH   ++   L 
Sbjct: 323 AVLAAAILSTAGVSLEHIVAGLAQVQV-PGRMERVHVGQEFTAV-VDYAHKPAAVAQGLD 380

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R  T GRII V GCGGDRD  KRPIMG+ A   +D+ IVTDDNPRSEDP  IRA ++ 
Sbjct: 381 ALRARTEGRIITVLGCGGDRDTAKRPIMGEAAARRSDVLIVTDDNPRSEDPAAIRAAMLA 440

Query: 435 GI----PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G     P      +E G+R EAI  A+ +    D++ +AGKGHE+
Sbjct: 441 GARSVGPAEGGEILEIGDRREAIAHAVSLAGPGDIVFLAGKGHES 485


>gi|15609295|ref|NP_216674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Rv]
 gi|31793338|ref|NP_855831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis AF2122/97]
 gi|121638040|ref|YP_978264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661974|ref|YP_001283497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Ra]
 gi|148823367|ref|YP_001288121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis F11]
 gi|161350069|ref|NP_336687.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|224990534|ref|YP_002645221.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798777|ref|YP_003031778.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289554055|ref|ZP_06443265.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|306968293|ref|ZP_07480954.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308375793|ref|ZP_07445136.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308376926|ref|ZP_07668382.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308379133|ref|ZP_07485181.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|54037860|sp|P65478|MURE_MYCBO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041509|sp|P65477|MURE_MYCTU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2104320|emb|CAB08669.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat
           e ligase MurE [Mycobacterium tuberculosis H37Rv]
 gi|31618930|emb|CAD97035.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis AF2122/97]
 gi|121493688|emb|CAL72163.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148506126|gb|ABQ73935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate MurE
           [Mycobacterium tuberculosis H37Ra]
 gi|148721894|gb|ABR06519.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis F11]
 gi|224773647|dbj|BAH26453.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320280|gb|ACT24883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289438687|gb|EFD21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|308345197|gb|EFP34048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308349468|gb|EFP38319.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308354099|gb|EFP42950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308358073|gb|EFP46924.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|326903775|gb|EGE50708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis W-148]
 gi|328458540|gb|AEB03963.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 4207]
          Length = 535

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 59  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +   G+FTNL RDH+D+H +   YF AK  LF+ +   +   A++  DD   + +  RA
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 293

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +A    ++V    +  H +           +Q   I   G        LPG + V N L
Sbjct: 294 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  +   +G+     +  L ++ V PGR E +    +G    VDYAH   +L  +L  +
Sbjct: 350 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 407

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
                 R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G 
Sbjct: 408 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 466

Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 467 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 507


>gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 478

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 242/478 (50%), Gaps = 32/478 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P + +Q+ +     +   +N+  ++S  I+   +FV   G   DGH +  QA+ +GA A+
Sbjct: 4   PAINSQIEVL----KSLPVNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAV 59

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSS 128
           + +    +         + P+++ D+  + L+L   + Y  HP   +    VTGT+GK++
Sbjct: 60  IANRPLDI---------DIPVIMTDSYYQSLALV--KAYYGHPHQKIKHIGVTGTNGKTT 108

Query: 129 VASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           V+  + QI  ++  S++   +G     S +  +N  TTP  + L      ++ +      
Sbjct: 109 VSHCLNQILNQTTTSAYIGTLGAKLAGSDYPLEN--TTPDGVTLLNLFHQMAQRETEFNL 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q R   + L  G  TN+GRDH+DYH+T+ AY  AK++L + + P  + A+I
Sbjct: 167 MELSSHALAQDRAGFVSLQIGIITNIGRDHLDYHKTKDAYVQAKLQLIDRIAPNGT-AVI 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLF 304
             DD ++   ++RA +    V++ G +    H+    V          + ++G+ FD   
Sbjct: 226 NLDDPHAAAAIERA-SGRVNVVTFGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNS 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +P  F V NAL  A   +++G  S+ +   L+ +    GR +F+  N+ G    VDYAH
Sbjct: 285 QMPFTFNVENALAIAASLLSLGWQSSRIAAALQTIVAPDGRAQFLSLNN-GATGLVDYAH 343

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            ++ L  +L+++R  T GR+IVV G  GDR Q    I G +   LAD A+ T DNP   D
Sbjct: 344 NADGLSKLLEDVRPYTKGRLIVVTGVTGDRIQDASGI-GVLCSQLADTAVFTSDNPMGVD 402

Query: 425 PEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            E I   +   +  +P F E  +R EAI  A ++    D++VV GKG ET   ++NG+
Sbjct: 403 QEDIFRALTSQVSKVPHF-EISDRAEAIEFAKQLSVAGDLIVVCGKGSETHQYISNGK 459


>gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 493

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/465 (30%), Positives = 235/465 (50%), Gaps = 34/465 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ ++  DSR +Q   +FV I G   DGH +  +A+  GA  +V      L +  A +  
Sbjct: 27  QVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGETIAQV-- 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC----QRSGL 142
                +V +T + + L A++ +    ++I  + VTGT+GK+SV   +Q I     ++S L
Sbjct: 85  -----IVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMGEKSAL 139

Query: 143 SS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           S    F +      S+    + L+T   I+ AK       +G   +++E SSHGL   RL
Sbjct: 140 SGTIGFNLNGILYESANTTSDALSTQQMIFRAKM------EGCRLMTMEVSSHGLALGRL 193

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256
            G+      FTNL  DH+D+H T + Y +AK  LF +L   L K    ++ ADDA+S+  
Sbjct: 194 AGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE-- 251

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN 314
            + A      V + G + +    + +   ++    +  VE  +  +     L GEF +YN
Sbjct: 252 -RYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLGEFNIYN 310

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G     ++E +E+L  V GR E V ++    +++VDYAHT +++E  ++
Sbjct: 311 VLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKVCSD-LPVQMFVDYAHTPDAIEKAIE 369

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I + G GG+RD+ KRP M + A   A+  I+T D+PR ED   I  ++  
Sbjct: 370 AAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKA-SAAEYVILTTDDPRYEDYNSITGDLAK 428

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+    F   G+R EA+R AIE+    D+++ AGKGHE   I+ N
Sbjct: 429 GMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQIIEN 473


>gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
 gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
          Length = 506

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 236/478 (49%), Gaps = 37/478 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL +QL       R   +  ++ DSR ++ G ++ A+ G +  G  F+ QA + GA A++
Sbjct: 19  ELADQLGAA-QPDRTADVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAASLGAVAVL 77

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130
                + +  +    +  P+L V++ R  +   A+ LYG+   ++L   +TGTSGK++ A
Sbjct: 78  TDPGGAERAAA----TGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGKTTTA 133

Query: 131 SFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185
             V+      GL + +  G   T+ +   + R+    TTP    L    + +  +GV  V
Sbjct: 134 YLVE-----GGLKTAKATGLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAV 188

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH L   R+DG       FTNL  +H+++H   + YF AK +LF     +    I
Sbjct: 189 AMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPA--RSRLGI 246

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLF 304
           + ADD Y + + + A        + G+       + V         T++  EG       
Sbjct: 247 VNADDEYGRRLAEEATVPVVTYSAEGHPDADWRAEDVQVGPMDSTFTVTGPEGVRVSARS 306

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361
           PLPG F V N L A     A G+D+    + +  +  VPGR E V      G+ Y   VD
Sbjct: 307 PLPGPFNVANTLAAIVALAAAGLDAQTAADGIAAVPGVPGRLERVDA----GQPYLAVVD 362

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH ++++E +L+ +R +T GR+ VV GCGGDRD+ KR  MG     LAD A++T DNPR
Sbjct: 363 YAHKTDAVESVLRALRKVTKGRVHVVLGCGGDRDRTKREPMGAAVARLADTAVLTSDNPR 422

Query: 422 SEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470
           SEDP  I A ++ G   +P   E+G  +       AI  A+      D ++VAGKGHE
Sbjct: 423 SEDPLAILAAMLQGAASVPAH-ERGEVLLFEERAAAIAAAVARARPGDTVLVAGKGHE 479


>gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
 gi|149752172|gb|EDM62103.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
          Length = 487

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 242/477 (50%), Gaps = 38/477 (7%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L+ +L    +Q  ++ ++ E+ +DSR +  G +FV I G   DGH ++ Q   +GA A+
Sbjct: 5   QLLERLEYEVVQGDDQIEVTELINDSRKVTEGSVFVCISGAVSDGHAYVQQVAEKGAAAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V      +D  A       ++ V+NTR  L+L ++  +G +P   L V G +G     +
Sbjct: 65  IVE-----KDVEAP--EGLTVIKVENTRYALALTSAAYFG-YPAEKLKVIGITGTKGKTT 116

Query: 132 ---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184
               V+ I +  G+   ++G   TI +   D  +    TTP    + K  S +  +G   
Sbjct: 117 TTYMVKSILEEVGI---KVGLIGTIEAIIGDKSIPANNTTPESYTIQKYFSEMVEEGCEC 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKES 242
           V +E SS GL   R  GI    G FTNLG DHI  + H+    Y   K  LF++      
Sbjct: 174 VVMEVSSQGLKLDRTAGIPFEIGIFTNLGEDHIGPNEHKDFNEYKYCKSLLFKQC----K 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEG-K 298
             I   DD + +++ K   +A C+V + G+  K  I    V  I     + +   V G  
Sbjct: 230 IGIGNVDDKWFEDIFK---DATCKVETFGFSEKADIRATDVKHISRPGYLGVQYHVAGLM 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           DFD    +PG+F VYN+L A  +C   G+    + + L K+  V GR E +   S    +
Sbjct: 287 DFDVEIDIPGDFSVYNSLTAIAVCRHFGVPVEDIKKAL-KVARVKGRIEMIKV-SDDFTL 344

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAH + +LE +L  +R     RI+ VFGCGG+R + +R  MG+++  L+D  I+T D
Sbjct: 345 MIDYAHNAMALESLLDTLRDYHPERIVTVFGCGGNRSKTRRYEMGEVSGKLSDFTIITSD 404

Query: 419 NPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPR E+P+ I  +I+ G+      +I   +R EAI+ AIE     DV+++AGKGHET
Sbjct: 405 NPRFEEPQAIIDDIVVGMKKTDGKYITICDRKEAIKYAIEHGQPGDVIILAGKGHET 461


>gi|254232316|ref|ZP_04925643.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|294993544|ref|ZP_06799235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 210]
 gi|297731736|ref|ZP_06960854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659071|ref|ZP_07815951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|124601375|gb|EAY60385.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|323719274|gb|EGB28417.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis CDC1551A]
          Length = 521

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 45  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 101

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 102 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 160

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 161 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 219

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +   G+FTNL RDH+D+H +   YF AK  LF+ +   +   A++  DD   + +  RA
Sbjct: 220 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 279

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +A    ++V    +  H +           +Q   I   G        LPG + V N L
Sbjct: 280 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 335

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  +   +G+     +  L ++ V PGR E +    +G    VDYAH   +L  +L  +
Sbjct: 336 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 393

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
                 R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G 
Sbjct: 394 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 452

Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 453 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 493


>gi|116072268|ref|ZP_01469535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
 gi|116064790|gb|EAU70549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
          Length = 502

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 232/460 (50%), Gaps = 17/460 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+SDSR    G +FV + G++ DG LF  QA+  GA A V+  A +  D      S
Sbjct: 24  QIESVTSDSRLAGPGSLFVGLPGDRVDGGLFWRQALNAGAAAAVIGPAAAAVDPPGD--S 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +  ++V D     L   A+  + +  E   +L VTGT+GK++    ++ +    G S+  
Sbjct: 82  DQVVVVADPLASTLGELAASFWSRPSERMALLGVTGTNGKTTTTYLIEHLALACGRSTAL 141

Query: 147 IGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            G   +  S  +     TT     L   L+  +S G    ++E SSH L QHR+ G +  
Sbjct: 142 FGTLVNRWSGHSITATHTTAFADRLQAQLAEAASAGSLLAAMEISSHALAQHRVAGCRFA 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSKEVMKRAHNA 263
              FTNL +DH+DYH + + YF AK  LF E L +  PA  ++  DD +  ++ +R   A
Sbjct: 202 GAVFTNLTQDHLDYHLSMEDYFEAKALLFSEALLQAGPARAVVNGDDPWGAKLAERL-GA 260

Query: 264 GCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            C   S+      + ++ +C   H      IS  G+   F  PL G F + N L A G+ 
Sbjct: 261 QCWRSSLTDPTAELRMEDLCMTSHGVSGRLISPLGEGA-FQSPLLGRFNLMNLLQAVGVL 319

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           +   +    +L  +     VPGR E V       +    + VDYAHT + LE  L   R 
Sbjct: 320 LQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAITTTLPTVLVDYAHTPDGLENALAAARP 379

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G++I VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+EDP +I  +++ GIP 
Sbjct: 380 FAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTEDPLRILEDVVKGIPD 439

Query: 439 FIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +++    +R  AI   I   +  D+++VAGKGHE   I+
Sbjct: 440 GVDRVVDPDRGAAIAQTIAEADAADLVLVAGKGHEDYQIL 479


>gi|291527976|emb|CBK93562.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale
           M104/1]
          Length = 490

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 158/496 (31%), Positives = 240/496 (48%), Gaps = 62/496 (12%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ L+ + D+  L     I        +I+ +  DSR ++   +FV I G   D H F
Sbjct: 1   MKLEKLLERMDYKVLAGSTDI--------EISTLVYDSRKVEKASVFVCISGAVSDAHDF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHP 114
           IP  + +GA A+VV             +  TPI     + VD+TR  L+  ++  +    
Sbjct: 53  IPDVVKKGAAAVVVE------------KDVTPIEGVTYIKVDDTRLALACMSAAYFDYPA 100

Query: 115 ENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPI 168
           E I  +  T  K    +   V+ I + +G+ +  IG   TI S   D R+    TTP   
Sbjct: 101 EKIKTIGITGTKGKTTTTYMVKSILESAGIKTGLIG---TIESICGDKRIPSANTTPESY 157

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--AY 226
            + +    +  +G+  V +E SS  L  HR+ G     G FTNL  DHI  H+ +    Y
Sbjct: 158 RVQELFKEMVDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADY 217

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLK 280
            + K  LF +        I   DD + + +MK  H   C+V + GY+       + + LK
Sbjct: 218 MHCKSLLFRQC----RLGIFNGDDEHLEGIMK-GHT--CQVETYGYKSTNNLVAENVELK 270

Query: 281 KVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K    H    V   V G  DFD    +PG+F VYN+L A  +C    +D   + E L   
Sbjct: 271 KE---HGALGVKYHVSGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALH-- 325

Query: 340 HV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           HV V GR E V    R   + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +
Sbjct: 326 HVSVKGRIEIVPVTKRY-TLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSR 384

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454
           R  MG+++  LAD+ +VT DNPR E+P  I  +I+ G+      ++   +R EAIR  +E
Sbjct: 385 RYEMGEVSSRLADLTVVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCME 444

Query: 455 MLNKQDVLVVAGKGHE 470
                D++V+AGKGHE
Sbjct: 445 NAKDGDIIVLAGKGHE 460


>gi|291524550|emb|CBK90137.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale DSM
           17629]
          Length = 490

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 158/496 (31%), Positives = 240/496 (48%), Gaps = 62/496 (12%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ L+ + D+  L     I        +I+ +  DSR ++   +FV I G   D H F
Sbjct: 1   MKLEKLLERMDYKVLAGSTDI--------EISTLVYDSRKVEKASVFVCISGAVSDAHDF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHP 114
           IP  + +GA A+VV             +  TPI     + VD+TR  L+  ++  +    
Sbjct: 53  IPDVVKKGAAAVVVE------------KDVTPIEGVTYIKVDDTRLALACMSAAYFDYPA 100

Query: 115 ENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPI 168
           E I  +  T  K    +   V+ I + +G+ +  IG   TI S   D R+    TTP   
Sbjct: 101 EKIKTIGITGTKGKTTTTYMVKSILESAGIKTGLIG---TIESICGDKRIPSANTTPESY 157

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--AY 226
            + +    +  +G+  V +E SS  L  HR+ G     G FTNL  DHI  H+ +    Y
Sbjct: 158 RVQELFKEMVDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADY 217

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLK 280
            + K  LF +        I   DD + + VMK  H   C+V + GY+       + + LK
Sbjct: 218 MHCKSLLFRQC----RLGIFNGDDEHLEGVMK-GHT--CQVETYGYKSTNNLVAENVELK 270

Query: 281 KVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K    H    +   V G  DFD    +PG+F VYN+L A  +C    +D   + E L   
Sbjct: 271 KE---HGALGIKYHVSGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALH-- 325

Query: 340 HV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           HV V GR E V    R   + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +
Sbjct: 326 HVSVKGRIEIVPVTKRY-TLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSR 384

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454
           R  MG+++  LAD+ +VT DNPR E+P  I  +I+ G+      ++   +R EAIR  +E
Sbjct: 385 RYEMGEVSSRLADLTVVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCME 444

Query: 455 MLNKQDVLVVAGKGHE 470
                D++V+AGKGHE
Sbjct: 445 NAKDGDIIVLAGKGHE 460


>gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 498

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 153/486 (31%), Positives = 241/486 (49%), Gaps = 27/486 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ I+ +  DSR +  G +F+A+ G K+DG  FI QAI + A AI+  +    +      
Sbjct: 19  KKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIFKY 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
             N  ++      + +SL A+R Y K P     I+ +TGT+GK++V   + Q     G  
Sbjct: 79  IKNVILIYFFKLSENVSLLANRFY-KEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTK 137

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G       +  Q    TT SPI++   LS +  +    V++E SSHGL QHR+  +
Sbjct: 138 TATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEV 197

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+  + Y +AK  LF     K    I+ ADD Y K  +K+  N
Sbjct: 198 PFYIAIFTNLTQDHLDYHENMEKYESAKWLLFST--HKVKKIILNADDQYGKIWLKKLLN 255

Query: 263 AGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQ 311
                +++       Y  K+I+   +   +N   + I+ E     G+    L    G F 
Sbjct: 256 FYTVAVTIQNRKQKKYSTKWINATNIEQ-NNNNSIYITFESSWGTGRISSCLI---GRFN 311

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L++    + +G   + ++   EK+  V GR E      +   I +DYAHT ++L+ 
Sbjct: 312 VTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFI-IDYAHTPDALKK 370

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L  I +     I  +FGCGG+RDQ KRPIMG IA  ++D  I+T+DNPR+E  +KI  +
Sbjct: 371 TLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQD 430

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G       +   +R +AI  A        ++++AGKGHE   I+ N     S D  I
Sbjct: 431 ILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKI 489

Query: 489 IREILG 494
           +  +LG
Sbjct: 490 VLNLLG 495


>gi|297634747|ref|ZP_06952527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|306776408|ref|ZP_07414745.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|306789299|ref|ZP_07427621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|307080227|ref|ZP_07489397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
 gi|308370928|ref|ZP_07667049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308373338|ref|ZP_07667556.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308374507|ref|ZP_07436318.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308215196|gb|EFO74595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|308330355|gb|EFP19206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308334189|gb|EFP23040.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|308338021|gb|EFP26872.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308341706|gb|EFP30557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308361978|gb|EFP50829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
          Length = 517

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 41  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 97

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 98  RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 156

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 157 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 215

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +   G+FTNL RDH+D+H +   YF AK  LF+ +   +   A++  DD   + +  RA
Sbjct: 216 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 275

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +A    ++V    +  H +           +Q   I   G        LPG + V N L
Sbjct: 276 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 331

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  +   +G+     +  L ++ V PGR E +    +G    VDYAH   +L  +L  +
Sbjct: 332 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 389

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
                 R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G 
Sbjct: 390 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 448

Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 449 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 489


>gi|215403433|ref|ZP_03415614.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 517

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 41  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 97

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 98  RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 156

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 157 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 215

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +   G+FTNL RDH+D+H +   YF AK  LF+ +   +   A++  DD   + +  RA
Sbjct: 216 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 275

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +A    ++V    +  H +           +Q   I   G        LPG + V N L
Sbjct: 276 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 331

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  +   +G+     +  L ++ V PGR E +    +G    VDYAH   +L  +L  +
Sbjct: 332 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 389

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
                 R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G 
Sbjct: 390 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 448

Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 449 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 489


>gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 548

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 147/476 (30%), Positives = 228/476 (47%), Gaps = 30/476 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSRH+  G ++ A+ G +  G  F               ++ +    S      
Sbjct: 59  VRGVTLDSRHVLPGDLYAALPGARHHGAQFA----------GQARASGAAAALSDRPLPG 108

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P LVV + R  L   A+ L+  HP +   +  VTGT+GK+S    +    + +G  +  
Sbjct: 109 LPTLVVPDPRAVLGPLAAHLH-DHPSHHLEVYGVTGTNGKTSTTHLLDAGLRSAGHRTGM 167

Query: 147 I-GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           I G       +++  + TTP    L + L+ L  QG T  +VE SSHGL  HR+DG +  
Sbjct: 168 ISGIRVRTPEWSRPAQRTTPEAPELQETLAALREQGATSAAVEVSSHGLALHRVDGTRFR 227

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTNLGRDH+D H  Q++YF AK  LF     + + A++  DDA+ + +  +      
Sbjct: 228 AAVFTNLGRDHLDLHGDQESYFAAKASLFAPH--RCALAVVNVDDAHGRRLAAQVRVPVT 285

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G +       +V A  ++    +   G D      L G  QV NAL A     A 
Sbjct: 286 TFSAAGRREADWRATEVRADADRTSFRLLGPGTDRRVRLHLLGTHQVDNALGAVAALHAG 345

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSG 382
           G++   VL  +E L  V GR + +      G+ +   VDYAH   +   +L  +RT+T G
Sbjct: 346 GLNVEDVLRGMEDLTAVSGRLQRIDE----GQPFLALVDYAHNVAAQRRLLPFLRTLTGG 401

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE- 441
           R++VV G  G+RD GKR  +G+ A  L D+ IVTD++P  +DP  +R  +  G  G    
Sbjct: 402 RLVVVLGATGERDPGKRGPLGRTAAQLGDVVIVTDESPHDDDPAALREAVAGGARGAASA 461

Query: 442 ----KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               + +R  AIR A+ + +  DV+VV+G+GH+   +V  G  +   D   +R  L
Sbjct: 462 QVHVEADRDRAIRLAVSLADPGDVVVVSGRGHDG-QLVAGGRTRAFDDGARLRAAL 516


>gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 517

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 146/487 (29%), Positives = 225/487 (46%), Gaps = 43/487 (8%)

Query: 23  MQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           + W R R    + SDSR I  G  F+A  G   DG   +  AIA+GA A +V  A     
Sbjct: 25  LPWLRARVSGSLHSDSRLIAPGDGFIAWPGASTDGRAHVADAIARGATACLVEQAGVAAF 84

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV------ 133
                   + +  +   +      A++ + +     ++LAVTGT+GK+S A ++      
Sbjct: 85  AFPAAPGAS-LASLPGLKAAAGPIAAQWFDQPSRQLDVLAVTGTNGKTSTAWWLADALNG 143

Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                +C  +G     + P    +       +TTP P+ L +AL     +G++  ++EAS
Sbjct: 144 RAKSPVCALAGTLGLGVPPVLETAG------MTTPDPLRLQRALRQFVDRGLSACAIEAS 197

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S GL+Q RL G ++ A  FTN  +DH+DYH +  AY+ AK  LF+   P    A+I  DD
Sbjct: 198 SIGLEQGRLAGTQIRAAIFTNCTQDHLDYHGSMAAYWRAKRALFD--WPGLQAAVINIDD 255

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               ++          + S+  QG   +  + +       + T+            + G 
Sbjct: 256 PAGAQLHAELAGRVPDLWSISTQGPARLAARDITLAAQGLRCTVREGAAPQRLTTRVIGH 315

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + + N L       ++G   A  L+    L  VPGR + +    +   + VDYAHT ++L
Sbjct: 316 YNLQNLLAVLATLRSLGWPLAEALQAGAGLQPVPGRMQQLALAGQP-LVVVDYAHTPDAL 374

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L+ +R + +   GR+  VFGCGGDRD GKRP+MG  A   AD  ++T DNPRSEDP+
Sbjct: 375 AKALQALRPLAARRAGRLWCVFGCGGDRDAGKRPLMGAAAEQQADRLLLTSDNPRSEDPD 434

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIE----------MLNKQDVLVVAGKGHETVHIVT 476
            I  +I+ GI       +R  A+RT  +               DVL++AGKGHE    V 
Sbjct: 435 AILRQILQGI-------SRRRAVRTEPDRAAAIAQAVAEAAPADVLLIAGKGHEDSQEVA 487

Query: 477 NGEKKMS 483
              +  S
Sbjct: 488 GVRRPFS 494


>gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 497

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 154/494 (31%), Positives = 249/494 (50%), Gaps = 31/494 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E +    +F     ++ + ++ +DSR ++AG  F+AI G   DGH  I + +AQGA
Sbjct: 6   KELIEALYNKKLFDQIDLDQTVTKLVNDSRQVEAGACFIAIKGENFDGHQAIAEVVAQGA 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSG 125
           + I+V     L     TI +N   ++VD++ +  ++ A++ Y + P     ++AVTGT+G
Sbjct: 66  KLIIVEQ---LPANYQTIPAN--FVLVDSSFRAQAILANKFY-QEPSRKLKVVAVTGTNG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181
           K++ +S +  +       + +IG   T+     D       TTP+ ++L    + +  +G
Sbjct: 120 KTTTSSMISDLLTSLDHKTGKIG---TLHYKVADTYYPAVNTTPNALHLQALFAEMLERG 176

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
                +EASSH L   RL    +    FTNL R+H+D+H+T   Y  AK  LF +L    
Sbjct: 177 CQDAVIEASSHALSLGRLWYTDVDCAIFTNLTREHLDFHKTMDNYAYAKSLLFSQLGQAF 236

Query: 239 PKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +  P  AII  DD Y  EVM +A  A     S+  +    +  ++          +   
Sbjct: 237 HQGRPRLAIINKDDPYW-EVMAQATAADLVTYSLVDEEATAYASQIQNKETGLAFKLHFN 295

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + F+   P+ G + V N L AA LC+A    ID A +L   +    V GR E +  N +
Sbjct: 296 DQVFELELPMRGHYNVSNYL-AAFLCLACYYEIDVANILRATKDFKGVSGRMEVLALN-K 353

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIA 413
              + VD+AHTS++LE +++ + +   GR++ + G  GG+RD G RP +G +  + AD  
Sbjct: 354 DFDVVVDFAHTSDALERVMQELVSHKQGRLLALMGHSGGNRDSGARPGIGDVLFNYADYI 413

Query: 414 IVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + T DNPR ED  KI  E+I  H    +    +R  A+ T +EM    DVL+ AGKG E 
Sbjct: 414 VFTADNPRFEDVTKICHEMIGQHDEKPYTIVEDRKAAVITMLEMAQSGDVLLFAGKGGEG 473

Query: 472 VHIVTNGEKKMSVD 485
             I+  G++K+  D
Sbjct: 474 YQII--GDQKIPYD 485


>gi|13881902|gb|AAK46501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 581

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 105 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 161

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 162 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 220

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 221 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 279

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +   G+FTNL RDH+D+H +   YF AK  LF+ +   +   A++  DD   + +  RA
Sbjct: 280 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 339

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +A    ++V    +  H +           +Q   I   G        LPG + V N L
Sbjct: 340 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 395

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  +   +G+     +  L ++ V PGR E +    +G    VDYAH   +L  +L  +
Sbjct: 396 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 453

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
                 R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G 
Sbjct: 454 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 512

Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 513 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 553


>gi|289745330|ref|ZP_06504708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
 gi|289685858|gb|EFD53346.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 535

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 59  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +   G+FTNL RDH+D+H +   YF AK  LF+ +   +   A++  DD   + +  RA
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 293

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +A    ++V    +  H +           +Q   I   G        LPG + V N L
Sbjct: 294 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  +   +G+     +  L ++ V PGR E +    +G    VDYAH   +L  +L  +
Sbjct: 350 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 407

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
                 R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G 
Sbjct: 408 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 466

Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 467 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 507


>gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 498

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 153/486 (31%), Positives = 241/486 (49%), Gaps = 27/486 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ I+ +  DSR +  G +F+A+ G K+DG  FI QAI + A AI+  +    +      
Sbjct: 19  KKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIFKY 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
             N  ++      + +SL A+R Y K P     I+ +TGT+GK++V   + Q     G  
Sbjct: 79  IKNVILIYFFKLSENVSLLANRFY-KEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTK 137

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G       +  Q    TT SPI++   LS +  +    V++E SSHGL QHR+  +
Sbjct: 138 TATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEV 197

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+  + Y +AK  LF     K    I+ ADD Y K  +K+  N
Sbjct: 198 PFYIAIFTNLTQDHLDYHENMEKYESAKWLLFST--HKVKKIILNADDQYGKIWLKKLLN 255

Query: 263 AGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQ 311
                +++       Y  K+I+   +   +N   + I+ E     G+    L    G F 
Sbjct: 256 FYTVAVTIQNRKQKKYSTKWINATNIEQ-NNNNSIYITFESSWGTGRISSCLI---GHFN 311

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L++    + +G   + ++   EK+  V GR E      +   I +DYAHT ++L+ 
Sbjct: 312 VTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFI-IDYAHTPDALKK 370

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L  I +     I  +FGCGG+RDQ KRPIMG IA  ++D  I+T+DNPR+E  +KI  +
Sbjct: 371 TLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQD 430

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G       +   +R +AI  A        ++++AGKGHE   I+ N     S D  I
Sbjct: 431 ILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKI 489

Query: 489 IREILG 494
           +  +LG
Sbjct: 490 VLNLLG 495


>gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 160/486 (32%), Positives = 242/486 (49%), Gaps = 46/486 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +++SDSR +  G +F A VG+  DG  +I  A+ +GA A+V    Y    F+   + + P
Sbjct: 23  QLTSDSRRVAPGDVFFAYVGDA-DGRSYIADAVERGAAAVV----YEAAGFTWPAQIDVP 77

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR-SGLSSFQIG 148
            L V + +      A+  YG+  + +L  AVTGT+GK+S A ++     R +G S+  + 
Sbjct: 78  HLAVTDLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSCAYWLGIALSRLAGASTAGVI 137

Query: 149 PTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            T  + SF             TTP  + L ++L  L+   V  +++EASS GL Q R++G
Sbjct: 138 GTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQGRVGALAIEASSIGLAQGRMNG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + +     TN  RDH+D+H   Q Y +AK +LF+   P    A++  DD   + ++    
Sbjct: 198 MHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQ--WPGLKHAVVNLDDDMGQRLLPLL- 254

Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LP 307
            A  +V  +GY     QG   H           Q+  S  G  F    P         L 
Sbjct: 255 -AERKVPVIGYAIADEQGGDPHGVPTL---RASQLRSSHTGTVFHVDSPFGSGQVKTQLV 310

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTS 366
           G F V N L   G+ +  G+    V+     L   PGR  +F G +     I +DYAHT 
Sbjct: 311 GRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALSPAPGRMQQFGGPDVP--LIVIDYAHTP 368

Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++L+  L  +R + +   G++  VFGCGGDRD GKRP MG+IA + AD  ++T DNPRSE
Sbjct: 369 DALDKTLSTLRQLATQRGGQLWCVFGCGGDRDPGKRPQMGQIA-EQADQVVLTSDNPRSE 427

Query: 424 DPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP+ I  +I  G+     +   +R  AI  AI    K DV+++AGKGHE+   +  G+K 
Sbjct: 428 DPQAIIDQIRAGMSRVEPVVLPDRAGAILWAIRHATKADVVLLAGKGHESYQEIA-GKKL 486

Query: 482 MSVDCD 487
             +D D
Sbjct: 487 PFLDAD 492


>gi|311742803|ref|ZP_07716612.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314431|gb|EFQ84339.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 503

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 152/493 (30%), Positives = 229/493 (46%), Gaps = 22/493 (4%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E+  QL + P    +  +  ++  +     G +F A+ G +  G  +  QA  +GA A++
Sbjct: 19  EVARQLGVRPPPV-DPSVTGLTLGTSDCCPGDLFAAVPGGRAHGAAYADQAAERGAVAVL 77

Query: 73  VSSA-YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
              A  ++ D +       P +VVD+ R+ L    + L+  HP +     G +G     +
Sbjct: 78  TDPAGAAVLDATEGAARRLPRVVVDDPREVLGRLGAWLH-DHPTSAFTTLGVTGTQGKTT 136

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                    G +   IG   T I      + LTTP    L    + +  + V   ++E S
Sbjct: 137 TTYLAESAVGGTVGVIGTIGTRIGGRPVASSLTTPEAPALQALFAVMREEAVDVCAMEVS 196

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH L + R+DG       F NLGRDH+D+H     YF+AK  LF     +   A++  DD
Sbjct: 197 SHALVKGRVDGFAFDVAVFLNLGRDHLDFHDDLADYFDAKAMLFTPDHARR--AVVNVDD 254

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLP 307
            + + ++ R       V +    G+    +      ++    + V G    + D   PLP
Sbjct: 255 DHGRRLLDRTD---LPVTTFSTDGRAADWRAANVRPHRLGTDLEVLGPAGLEIDLSVPLP 311

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHT 365
           G F V NAL         G D A +   +     VPGR E V    RG      VDYAH 
Sbjct: 312 GRFNVSNALAVVAALAPEGHDPADLAAGIAASPGVPGRMERV---DRGQPFTAVVDYAHK 368

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++  +L  +R +T GR+++V G GGDRD GKRP+MG+ A   AD+ +VTDDNPRSE P
Sbjct: 369 PDAVTAVLTALRPVTPGRLVMVIGAGGDRDHGKRPLMGEAAARHADLVVVTDDNPRSERP 428

Query: 426 EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             IRA+++ G  G     +E G+R EAI  A+      D +VVAGKGHE    +      
Sbjct: 429 AAIRADLLAGARGGPAEVVEIGDRREAIAHAVAGARLGDTVVVAGKGHEQGQEIDGVVHP 488

Query: 482 MSVDCDIIREILG 494
            S D  ++ E+LG
Sbjct: 489 FS-DRAVLEELLG 500


>gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica
           CNB-440]
 gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinispora tropica CNB-440]
          Length = 514

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 227/468 (48%), Gaps = 49/468 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  V+  S+ ++ G ++ A+ G +  G  F+  A   GA A++          +AT 
Sbjct: 39  EPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVSAAARAGAVAVLTDP----DGAAATA 94

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             + P+LVV + R  L   AS +YG       ++ VTGT+GK+S A  V+   + +G ++
Sbjct: 95  EVDLPMLVVPDPRAVLGDLASVVYGDPTAGLTVIGVTGTAGKTSTAYLVESGLRAAGHTT 154

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   T +     D+  TTP    L   L+    +GVT V +E SSH L   R+ G++
Sbjct: 155 GLIGTVETRLGDLVVDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHALAMGRVGGVR 214

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-------------ELLPKESPAIIYADD 250
              G +TN G DH+D+H     YF AK +LF+              LLP   PA +    
Sbjct: 215 FTVGGYTNFGSDHLDFHADSVDYFAAKAKLFDGRCEVEVLNHDDPALLPLHRPATVTYSA 274

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A        A  AG      GY  +F        +H    +T+            LPG  
Sbjct: 275 AGDGAATWWADEAGGE----GYAQRFT-------LHGPDGLTLPAG-------VALPGRH 316

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNS 368
            V NAL+A  + +A G+     +  +     VPGR E V +    RG    VDYAH +++
Sbjct: 317 NVANALLAVAVLVAAGVAPRTAVAGVADCGGVPGRLELVPSPGPVRG---VVDYAHKTDA 373

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +   L  +R  ++GR+I + G GGDRD+GKRP+MG  A + AD+ +VTDDNPR+EDP  I
Sbjct: 374 IVAALAALREFSTGRLICLLGAGGDRDRGKRPLMGVAAAEGADVVLVTDDNPRTEDPADI 433

Query: 429 RAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           RAE++ G+         +E   R  AI  A+++    DV+ + GKGHE
Sbjct: 434 RAEVLAGVRRADTEAQVLEVPGRRAAIAEAVQLAAPGDVVALLGKGHE 481


>gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 410

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/427 (31%), Positives = 208/427 (48%), Gaps = 39/427 (9%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA S   M++A  A      +  +  F              + I+  G  FD  
Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            P         + G F VYN L A     A+ I     ++ +E +  V GRFE V     
Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I
Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 415 VTDDNPR 421
            T +NPR
Sbjct: 404 FTSNNPR 410


>gi|319440251|ref|ZP_07989407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium variabile DSM 44702]
          Length = 549

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 154/494 (31%), Positives = 233/494 (47%), Gaps = 61/494 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA----EAIVVSSAYSLQDF 82
           ++ +   + D+R + A  +F+A+ G +  G  F  Q+         E + V    S Q  
Sbjct: 45  QQTVATAAIDARDVPADGLFMAVPGTRAHGARFAGQSAGHSVLTDEEGLGVLVDGSWQGT 104

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           +         LVVD+ R++L   A+ ++G HP   + V G +  +S  +    + +R+ L
Sbjct: 105 A---------LVVDDCRQWLGPVAAEIHG-HPSRDMTVIGVT-GTSGKTTTTYMMERALL 153

Query: 143 SSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
               +G   T  +     +    LTTP    L    + +  +GVTHV +E SSH L   R
Sbjct: 154 GHRHVGLIGTTGTRIDGRKIPTSLTTPEAPTLQALFARMRDEGVTHVVMEVSSHALVLGR 213

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA------IIYADDAY 252
           + G+      FTNL +DH+D+H T + YF+AK  LF E    + PA      ++  DD +
Sbjct: 214 VRGVDFDVAGFTNLSQDHLDFHPTMEDYFDAKSMLFTE---PQDPAGELPVPVVCVDDEW 270

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEF 310
            + +  R  +A   V + G    +  +  V A+H    Q VT+       ++   +PG F
Sbjct: 271 GRRLAGRTGDATVTVSTDGEAATW-QVSDV-AVHPDGTQHVTVDRADGQVEYDLSIPGAF 328

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----YVDYAHTS 366
            V NA +A    +A G D+++  E  E    VPGR E +  +S    +     VDYAH  
Sbjct: 329 NVANATLALATLVAAGEDASIADELAEV--SVPGRMEKISGSSPQTAVDFLALVDYAHKP 386

Query: 367 NSLEMILKNIRT-----------ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++  +L  +              T GR+ VV G GG+RD  KRP MG  A  +AD+ IV
Sbjct: 387 GAVTAVLDTLNGQLDRAAAGGNGATRGRLGVVLGAGGNRDHEKRPKMGAAAAAVADLVIV 446

Query: 416 TDDNPRSEDPEKIRAEIIHGI------------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           TDDNPR EDP  IRA ++ G             P   E G+R EAIR A+      DV+V
Sbjct: 447 TDDNPRDEDPATIRAAVLAGAGDAAAQRTDGVSPEIREIGDRAEAIRDAVGWARSGDVVV 506

Query: 464 VAGKGHETVHIVTN 477
           VAGKGHE+  I+ +
Sbjct: 507 VAGKGHESGQIIGD 520


>gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
          Length = 526

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 226/464 (48%), Gaps = 43/464 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VSSD    ++ W+FVAI G K+ G  F   AI  GA  ++       Q F   +    P+
Sbjct: 50  VSSDD--CESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGL--GVPV 105

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ-QICQR------SGLS 143
           + V + R  +    + +Y      +  +AVTGT+GK++ +  ++  I  R       G  
Sbjct: 106 IQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGTV 165

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +GP S      +  R T  +P+   +LA    Y    GV    +E S+H L  HR+D
Sbjct: 166 ETHVGPISF-----EAVRTTAEAPVVARFLAATEQYECGAGV----IELSAHALSLHRVD 216

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKR 259
           GI     +FTNL  DH+DY+   + YF AK  LF    P+ S   ++  DD + + + ++
Sbjct: 217 GIVFDVAAFTNLQHDHLDYYGDMENYFQAKALLF---TPEHSRHGVVCVDDEWGRRLAQQ 273

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNAL 316
           A      V ++  +     ++ V       +   ++    G       P+ GE  + N  
Sbjct: 274 ATVPVTTVSALTEEAADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTA 333

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILK 374
           VA    +++GID A V+  +E    +PGR E V     GG+  + VDYAHT  +LE  L+
Sbjct: 334 VAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTP-GGQPLVIVDYAHTPEALEWTLR 392

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           + R +TSGR+++VFG  GDRD  KR  + +IA   AD+  VTD+NPR+E P++IR  ++ 
Sbjct: 393 STRELTSGRVVIVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQEIRNYLLR 452

Query: 435 GI----PGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           GI    PG  +       R +A+R AI      D +++ GKG E
Sbjct: 453 GIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAE 496


>gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 498

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 153/486 (31%), Positives = 241/486 (49%), Gaps = 27/486 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ I+ +  DSR +  G +F+A+ G K+DG  FI QAI + A AI+  +    +      
Sbjct: 19  KKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAVAILCETKKKDKHGIFKY 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
             N  ++      + +SL A+R Y K P     I+ +TGT+GK++V   + Q     G  
Sbjct: 79  IKNVILIYFFKLSENVSLLANRFY-KEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTK 137

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G       +  Q    TT SPI++   LS +  +    V++E SSHGL QHR+  +
Sbjct: 138 TATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEV 197

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+  + Y +AK  LF     K    I+ ADD Y K  +K+  N
Sbjct: 198 PFYIAIFTNLTQDHLDYHENMEKYESAKWLLFST--HKVKKIILNADDQYGKIWLKKLLN 255

Query: 263 AGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQ 311
                +++       Y  K+I+   +   +N   + I+ E     G+    L    G F 
Sbjct: 256 FYTVAVTIQNRKQKKYSTKWINATNIEQ-NNNNSIYITFESSWGTGRISSCLI---GRFN 311

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L++    + +G   + ++   EK+  V GR E      +   I +DYAHT ++L+ 
Sbjct: 312 VTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFI-IDYAHTPDALKK 370

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L  I +     I  +FGCGG+RDQ KRPIMG IA  ++D  I+T+DNPR+E  +KI  +
Sbjct: 371 TLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQD 430

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G       +   +R +AI  A        ++++AGKGHE   I+ N     S D  I
Sbjct: 431 ILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKI 489

Query: 489 IREILG 494
           +  +LG
Sbjct: 490 VLNLLG 495


>gi|62261015|gb|AAX77953.1| unknown protein [synthetic construct]
          Length = 477

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 242/468 (51%), Gaps = 29/468 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  D +H+    +FVA+ G   DG+ +I   +A+G  ++V++ ++  +D          +
Sbjct: 17  IDDDDKHMLE--VFVALKGLSTDGNKYIDSVLAKGV-SLVLTDSHEFED-------QKRV 66

Query: 93  LVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
             + N ++ LS  A   Y  + P+NI+ +TGT+GK+S++S++ Q    S   +  +G   
Sbjct: 67  FYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNG 126

Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             I    +++  TT   + L K +SY   +   ++ +E SSH LDQ R++G+      F+
Sbjct: 127 NGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLVMEVSSHSLDQKRVEGLDFDVAIFS 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LS 269
           NL  DH+DYH+T   YF AK +LF+    +   AII  DD Y + +          V L 
Sbjct: 185 NLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAIINIDDEYGQRLCNMTQVPVITVSLK 242

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYN-ALVAAGLCIAIGI 327
             Y   +I  K +  I  K +  +   G+   ++   L G+F + N  L  A L   +  
Sbjct: 243 SEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTTKLIGDFNLMNLGLSFASLDGVLDW 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D  L L +++    V GR E +  ++   +I +DYAHT ++LE  L+ + +     +  +
Sbjct: 301 DCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYAHTPDALEKALQTLNSYNPNNLWCI 356

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGN 444
           FGCGG+RD  KRPIM +IA + A   ++T+DN R E  E I ++I  G       I   +
Sbjct: 357 FGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIENIFSDIRKGFKYPQKHIFITS 416

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           R +AIR +IE  N+ D++++A KGHE  ++  NG K+   + +II+ +
Sbjct: 417 REQAIRFSIENANQGDIILLASKGHE-CYLDKNGAKEYFDEREIIKNM 463


>gi|306820475|ref|ZP_07454111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551550|gb|EFM39505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 491

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 234/464 (50%), Gaps = 27/464 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF-SATIR 87
           +I ++  DS+      +F A++G   DGH +I  A + GA   V+S    LQ+  +  I 
Sbjct: 22  EIEDIVYDSKKAVEKTLFTALIGMTSDGHKYIENAYSSGARVFVISREEFLQEKENVEII 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
            N+  ++V++TR  L+  ++  +G HP     I+ +TGT GK++V+ +++ +   S +S 
Sbjct: 82  QNSTFILVEDTRVALATMSAEFFG-HPSKELTIVGITGTKGKTTVSGYIKSVLDNSDISC 140

Query: 145 FQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             IG      +   F   N  TTP    + K +  +   GV  +++E SS G+  +R+ G
Sbjct: 141 GVIGTNGIYFANQYFKTVN--TTPESYEIQKYMKKMVDNGVKVLAMEVSSGGIMMNRVHG 198

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           I+     FTNL  DHI    H T + Y   K  LF         +II  DD  SK ++++
Sbjct: 199 IEFDYAIFTNLSHDHIGEKEHPTFEHYRECKSMLF----AMSKYSIINIDDENSKVMIEK 254

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + +   +  S+     F   K +    N   +    E  +  ++    G+F VYNAL   
Sbjct: 255 SKDY--KTYSIDSSSDF-QAKDIIYPSNISDMRTYFEVNEKKYVVNSFGKFGVYNALCTI 311

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            LC  +G+    +   LEK HV  GR + +   +   ++ +DYAH   SLE +L+ ++ +
Sbjct: 312 MLCEQLGLSYQSIYTGLEKAHV-KGRLQVIDGFT-DIKVIIDYAHNEVSLENVLQTVKEL 369

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              R+IV+FG  G R Q +R  +  +A    D+ IVT DNP +E+P+KI  EI+  I   
Sbjct: 370 KPKRLIVLFGSVGTRSQNRREELATVASKYCDVIIVTSDNPDTENPQKIIDEIVSHISQD 429

Query: 440 IEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            +K      +R  AI+ AIEM  K DV+V+AGKGHE   ++ NG
Sbjct: 430 KKKYTYCYADRAVAIQKAIEMSQKGDVIVLAGKGHEEYQLI-NG 472


>gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
 gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
          Length = 493

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 233/492 (47%), Gaps = 46/492 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   FP              E+   E++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWFPYA-----------GEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVV-SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR--LYGKHPENI 117
            +A+AQGA A++V +     Q           I      R+  ++ A R  +       I
Sbjct: 51  DKALAQGATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYL 170
           + +TGT+GK+S +    Q+C +  L +   G  + + +          D+  TT   I L
Sbjct: 111 VGITGTNGKTSTS----QLCAQ--LVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITL 164

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L   + +GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  AK
Sbjct: 165 MRQLHEFADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAK 224

Query: 231 MRLF--EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             LF  + LL      ++  DD      +    N   ++     +    H +      N 
Sbjct: 225 QMLFRFDSLLH----GLVNLDDPVGAAWLSELANVPAKMWGFSIEA---HTEVAFYTKNA 277

Query: 289 Q------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           Q      Q T+     + D   PL G F + N L A       G+D   +   +  L  V
Sbjct: 278 QFNDQGVQATLVWPEGEVDIRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPV 337

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E   T +    + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+M
Sbjct: 338 AGRMERF-TTADNITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLM 396

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQ 459
           G+ A   AD  +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      
Sbjct: 397 GQAAEQCADRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPG 456

Query: 460 DVLVVAGKGHET 471
           DV+++AGKGHET
Sbjct: 457 DVILLAGKGHET 468


>gi|167571354|ref|ZP_02364228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis C6786]
          Length = 514

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 232/489 (47%), Gaps = 43/489 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG  F+A   +  D   FI  A+A+GA A++    Y  + F+A       
Sbjct: 30  QLHADTRSLQAGDAFIAYAVDGADNRPFIADALARGAAAVL----YQPEGFAADGLEPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++    P
Sbjct: 86  SLAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIA-----AALTALHQ-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTLEAYEAAKTKLFAWRGLRL--AVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGY----------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              RV ++ Y            + +   KV A        ++    D D      G F V
Sbjct: 255 LAGRVRTIAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNV 314

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370
            N L   G  +A  +     L  +E L  V GR E +G   +     + VDYAHT ++LE
Sbjct: 315 SNLLAVLGTLLAADVPFDAALAEIENLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALE 374

Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L  +R I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+K
Sbjct: 375 KTLDALRPIARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQK 434

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I  G+    +     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   
Sbjct: 435 IIDQIAAGMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFS 493

Query: 485 DCDIIREIL 493
           D D  R  L
Sbjct: 494 DQDHARLAL 502


>gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 505

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 227/464 (48%), Gaps = 29/464 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  + S S  +  G +F+ + G   DGH ++ +AI +G  A++             +
Sbjct: 23  DTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVNEAIQRGCAALMAEKKVE------RL 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
             + P +VV +TR+ +++ A   YG HP N   ++ VTGT+GK++    ++ I   +G  
Sbjct: 77  EGSIPCIVVPDTRRAMAVLADAYYG-HPSNAMNLIGVTGTNGKTTTTHMIEHIFHHTGHK 135

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG  S  + S+ +    TTP  + L   L  ++ +   +  +E SSH L   R+ G 
Sbjct: 136 TGLIGTVSMKLGSYIEKTENTTPESLVLQSMLKRMADREAKYAVLEVSSHALRMGRVRGC 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEV 256
                 FTNL  DH+DYH +   Y   K  LF +L      LPK   AI+ ADD +SK  
Sbjct: 196 NFKTAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLGNSYGSLPK--VAILNADDPFSK-- 251

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K A     +V+  G  Q   +   ++          +            + G F VYNA
Sbjct: 252 -KLAAKTSAQVIHYGIDQPSDVRASEIRMNQESTSFWLDTYLGSTWIHLNVVGIFNVYNA 310

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + LE    V GRF+ + T  +  ++ VDYAH  + LE ++  
Sbjct: 311 LAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQAIETG-QDFQVIVDYAHNPDGLEKVIST 369

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R IT G+II + GC GDRD+ KRPIM   A  LAD AI+T DNPRSE  E I  +++ G
Sbjct: 370 ARAITKGKIIALIGCEGDRDKAKRPIMAAKAAILADKAILTSDNPRSERSESILEDMVRG 429

Query: 436 I--PGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +   G        +R +AI  A+E+    D +++ GKGHET  I
Sbjct: 430 LDNAGLSRCETITSRKDAIHRALELAKTGDCVLILGKGHETQQI 473


>gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 494

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLS------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  L  Y  H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AENIQESLQGVSFDFVTPFGTYQVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 493

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  LY    H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|209519090|ref|ZP_03267896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
 gi|209500462|gb|EEA00512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
          Length = 520

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 160/480 (33%), Positives = 225/480 (46%), Gaps = 37/480 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +D+R + AG  F A      D   FI  AI +GA A++V          A++    P L 
Sbjct: 33  ADTRSLAAGDAFFAYAVEGADNRPFIDAAIERGAAAVLVQPEGFGGTLDASVAHAVPAL- 91

Query: 95  VDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                +     AS  Y    + +L V  TGT+GK+S + +V       G     +G   T
Sbjct: 92  ----NELAGTIASAWYRDPSDAMLTVGITGTNGKTSCSQWVAAALSALGTRCAIVGTLGT 147

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +         TTP    L ++L+ L   G   V++E SSH L Q R++G       FTN
Sbjct: 148 GLVGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFTN 207

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH T  AY  AK RLF    P+   A+I  DDA  + ++   H    R ++ G
Sbjct: 208 LTQDHLDYHGTFAAYETAKTRLFA--WPELRAAVINRDDAAGRRLLASTHGH-ARTIAYG 264

Query: 272 YQGKF--IHLK---KVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNAL 316
            +G     H K   +  A      V  +  G  F          +      G F V N L
Sbjct: 265 IEGGQGDAHAKGAPQADAWLTASNVRATATGTAFHLNTSDWGHAEVEVQTLGLFNVSNLL 324

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILK 374
              G+ +A  +     L  L KL  V GR E +G   +     + +DYAHT ++LE  L+
Sbjct: 325 AVLGVLLAADVPFDAALAELAKLESVNGRMERLGGRLQNDEPLVVIDYAHTPDALEKTLE 384

Query: 375 NIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +R I + R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P  I  +
Sbjct: 385 ALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSENPLAIIEQ 444

Query: 432 IIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           I+ G+     K  RIE    AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 445 IVAGMQD-ASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 502


>gi|91786968|ref|YP_547920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
 gi|91696193|gb|ABE43022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
          Length = 501

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 146/472 (30%), Positives = 222/472 (47%), Gaps = 44/472 (9%)

Query: 24  QW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +W RER    + +DSR +  G  F+A  G   DG  ++  A+A GA A +V     LQ F
Sbjct: 13  RWLRERVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARACLVE----LQGF 68

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
                 +  +      +      A+  + +   +  + AVTGT+GK+S   ++ Q   R 
Sbjct: 69  EPRGPDDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWWLAQALGRL 128

Query: 141 G-----LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           G     + +  IG    +        LTTP P+ L + +     +G    ++EASS GL 
Sbjct: 129 GRKCGVVGTLGIGAPGAVVFTG----LTTPDPVLLQQQMRRFVDEGFATCALEASSIGLV 184

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           + RLD   +    FTN  +DH+DYH + Q Y+ AK  LF    P    A+I  DD    E
Sbjct: 185 ERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFS--WPGLKAAVINVDDGKGLE 242

Query: 256 VMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL---------FP 305
           +      +   V ++   G   IH +K   IH+       V G  FD +           
Sbjct: 243 LSASLAGSDLDVWTLSCTGPARIHAQK---IHH------GVNGVSFDVVEGAEQHRVSSK 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G++ VYN L       A+GI     +     L  VPGR + +        + +DYAHT
Sbjct: 294 LVGQYNVYNLLGVIAALRAMGIPLVDAVAACADLLPVPGRMDTLAEEGLP-LVVIDYAHT 352

Query: 366 SNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++LE +L  ++ +     G++  VFGCGGDRD GKRP+M  +A   AD  +VT DNPRS
Sbjct: 353 PDALEKVLTALQPVARSRGGQLWCVFGCGGDRDAGKRPLMAAVAEKNADRVVVTSDNPRS 412

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           E+P  I  +++ G+        + +R  AI  A+ +    DV+++AGKGHE+
Sbjct: 413 ENPLAIIDQVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKGHES 464


>gi|325275017|ref|ZP_08141010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
 gi|324099845|gb|EGB97698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
          Length = 419

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 138/418 (33%), Positives = 209/418 (50%), Gaps = 20/418 (4%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +F    R+  I E++ DSR+++ G +F+A+ G K DG       IA        + AY  
Sbjct: 8   LFAHASRDPMIRELTLDSRNVRPGDLFLAVPGAKVDGR----GHIADALARGAAAVAYEE 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
           Q  +    ++ P++ V      LS  A R YG+     +++ VTGT+GK+SV   + Q  
Sbjct: 64  QGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLDLVGVTGTNGKTSVTQLLAQAL 123

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +  G     IG   T      Q  RLTTP PI +   L  L   G   V++E SSH L+Q
Sbjct: 124 ELLGKRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLYGLKKAGAKAVAMEVSSHALEQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  +       TNL RDH+DYH + QAY  AK +LF    P     ++  DD + + +
Sbjct: 184 GRVAALAFDIAVMTNLSRDHLDYHGSMQAYEAAKAKLFA--WPSLRCQVVNLDDEFGRRL 241

Query: 257 MKR------AHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +       A     R+LS   + +   L   K     H  +   ++ +G+       L 
Sbjct: 242 AQAFADRAPADPIESRLLSYSLENRDADLFCTKAAFDDHGVRATLVTAQGERI-LRSQLL 300

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A    +A+      +L  + KL    GR + +G  ++   + VDYAHT +
Sbjct: 301 GRFNLSNMLAAVATLLAMDFALDEILSVIPKLQGPVGRMQRLGGGAKP-LVVVDYAHTPD 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPRSEDP
Sbjct: 360 ALEKVLEALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRSEDP 417


>gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus 04-02981]
 gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 494

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  LY    H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|317501923|ref|ZP_07960107.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896603|gb|EFV18690.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 488

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 238/460 (51%), Gaps = 35/460 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++  +++DSR +++G +FV I G   DGH ++     +GA AI+       +D  A  
Sbjct: 20  ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKGAAAIIAE-----RDIEAP- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF- 145
                ++  +NTR  L+L ++  +G +P   L V G +G     +    I  RS L    
Sbjct: 74  -KGVTVIKAENTRYALALMSAAYFG-YPAEKLKVIGITGTKGKTTTTYLI--RSILEGVG 129

Query: 146 -QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++G   TI +   D ++    TTP    + +  + +  +G   V +E SS GL  HR  
Sbjct: 130 HKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVMEVSSQGLMLHRTA 189

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            I    G FTNLG+DHI  + H+  + Y   K  LF++        I   DD Y +++ +
Sbjct: 190 EIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQQC----KLGIANIDDPYYEDIFR 245

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEGK-DFDFLFPLPGEFQVYN 314
               A C+V + G+  K  +  + V  +     + +S  V GK DFD    +PG+F VYN
Sbjct: 246 ---GATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDVEIDIPGKFSVYN 302

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A  +C   G+ S  + E L+  HV  GR E +   S    + +DYAH + SLE +L 
Sbjct: 303 SLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKV-SDDFTLMIDYAHNAMSLESLLT 360

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++     R++ VFGCGG+R + +R  MG+++  LAD+ I+T DNPR E+P++I  +I  
Sbjct: 361 TLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTIITSDNPRFEEPQEIINDIKV 420

Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           GI      ++E  +R EAI+ AIE     DV+V+AGKGHE
Sbjct: 421 GIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHE 460


>gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
 gi|197298532|gb|EDY33076.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
          Length = 496

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 239/460 (51%), Gaps = 35/460 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++  + +DSR ++ G +FV I G   DGH +  +   +GA A+VV            +
Sbjct: 20  ETEVTTLINDSRKVENGSVFVCISGAVSDGHKYAAEVAEKGAAAVVVEK-------DVEV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++  ++ V++TR  L+L ++  +G   E   I+ +TGT GK++    ++ I + +G   
Sbjct: 73  PADVTVIKVEDTRYALALMSAAYFGYPAEKLKIVGITGTKGKTTTTYMIKSILEETG--- 129

Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++G   TI +   + ++    TTP    + +  + +  +G   V +E SS GL  HR  
Sbjct: 130 HKVGLIGTIEAIIGEKKIPAANTTPESYTIHQYFAEMVKEGCDCVVMEVSSQGLMLHRTA 189

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           GI    G FTNLGRDHI  + H+  + Y   K  LF++        I   DD Y ++V  
Sbjct: 190 GIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLLFKQC----RLGIANVDDKYFEDVFS 245

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEG-KDFDFLFPLPGEFQVYN 314
               A C+V + G+  K  +  + V  +     + ++  V G  DFD    +PG F VYN
Sbjct: 246 ---GATCKVETFGFSEKADLRAENVQLVSRPGYLGVAYHVAGVMDFDVEIDIPGTFSVYN 302

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A  +C    + + L+ + L+K  V  GR E V   S    + +DYAH + SLE +L 
Sbjct: 303 SLTAISVCRHFEVPAELIKDALKKAKV-KGRIEMVKV-SDDFTLMIDYAHNAMSLESLLT 360

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNPR E+P+ I  +I  
Sbjct: 361 TLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTIITSDNPRFEEPQAIIDDIKT 420

Query: 435 GI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           GI      ++E  +R EAI+ AI      DV+V+AGKGHE
Sbjct: 421 GIGRTNGKYVEICDRKEAIKYAISHGEVGDVIVLAGKGHE 460


>gi|33519611|ref|NP_878443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
 gi|46576955|sp|Q7VQJ2|MURE_BLOFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33517274|emb|CAD83658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
          Length = 499

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 158/453 (34%), Positives = 221/453 (48%), Gaps = 25/453 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PI 92
           DSR+I  G +F+AI G   DG L I  AI  GA AI+  S      F   I +N    PI
Sbjct: 31  DSRNINFGNLFIAIQGYNTDGRLHIDDAINNGAVAILSESYNKSTFFIKKIVNNVEVIPI 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +  +   K +S  A R Y  HP     ++ VTGT+GK+++   +       G  S  +G 
Sbjct: 91  IYFNQLNKCISNIAGRFY-DHPSLCLKLIGVTGTNGKTTITHLLTNWTSLLGERSAVMGT 149

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               + S    +  TT S I   K L      GVT V++E SSHGLDQ+R+D +      
Sbjct: 150 LGNGVLSDINPSCCTTCSAIETQKILKQFVQSGVTFVAMEISSHGLDQYRVDSLYFDVAI 209

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV- 267
           F+N+  DH+DYH     Y  AK RLF EL  K    +I  DD      +    NA     
Sbjct: 210 FSNISNDHLDYHNNINQYRMAKWRLFNELRVKN--YVINVDDCVGYRWLLSLSNAVAVTI 267

Query: 268 ---LSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              L   + G++I L K    ++  + V  S  G  F     L GE  V N L+A G  +
Sbjct: 268 KNNLPRSWSGRWIALVKADYYLYGTKIVFKSSWGNGF-IHSQLLGEVNVSNILLALGALL 326

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-G 382
            +G     +L    KL+ V GR E +   +    I VDYAHT ++L+ IL   + + + G
Sbjct: 327 IMGYSLKSLLYTGSKLYPVCGRLEVLSCLNHPTVI-VDYAHTPDALKKILIFAKHLCNKG 385

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R+  +FGCGG+RD+ KR +MG IA   +D  I+T+DNPR EDP+ I  +II  I      
Sbjct: 386 RLWCIFGCGGNRDRSKRSLMGVIANRYSDYVIITNDNPRVEDPKLIIDDIICKIRNSEKL 445

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             IE  +R+ AI   +      D +++ GKGHE
Sbjct: 446 KIIE--DRVYAINMVVSKACSDDFVLILGKGHE 476


>gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 494

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  LY    H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYSVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus RF122]
 gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus RF122]
          Length = 494

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  L  Y  H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AENIQESLQGVSFDFVTPFGTYPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|332528823|ref|ZP_08404797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
 gi|332041682|gb|EGI78034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
          Length = 554

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 163/513 (31%), Positives = 241/513 (46%), Gaps = 77/513 (15%)

Query: 24  QW-RER---KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS---- 75
           QW RER      E+S+DSR + AG  F+A  G   DG  F+P A+AQGA A +V +    
Sbjct: 16  QWLRERVGASGGELSTDSRRVGAGDGFIAWPGAARDGRAFVPAALAQGAAACLVDAPGLA 75

Query: 76  ----AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
               AY L D SA           +  +      A+  YG+  +   +LA+TGT+GK+S 
Sbjct: 76  AFADAYGL-DASARAERIAAYAGPEGLKAASGPIAANYYGQPSQALEVLAITGTNGKTST 134

Query: 130 ASFVQQICQR-------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           A ++ Q           + + +  +G  +  +       LTTP P+ L ++L  L+ QG 
Sbjct: 135 AWWLAQALSALRPTAPCAMIGTLGVGRVTATAEEIVGTGLTTPDPVLLQQSLRRLADQGF 194

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +  ++EASS G+ + RLDG  +    FTN  +DH+DYH +  AY+ AK  LFE   P+  
Sbjct: 195 SACALEASSIGIVERRLDGTHIRVALFTNFTQDHLDYHGSMAAYWQAKAALFE--WPQLP 252

Query: 243 PAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIH----------NKQQV 291
            A++  DD    E+ +  A  AG  + +   +       +   I            +   
Sbjct: 253 AAVVNVDDPQGAELARTLAARAGLDLWTCSLRADSAARLRANDIRMTAHGLRFEICEGAQ 312

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-- 349
           T S++ +         G + V N L        +G   A  +    +LH VPGR EF   
Sbjct: 313 TTSLQARTL-------GAYNVSNLLGVIATLRCLGFALADAVAACGELHPVPGRMEFFSG 365

Query: 350 GTNSRGGR-------------------------IYVDYAHTSNSLEMILKNIRTITS--- 381
           G ++  GR                           VDYAHT ++L  IL+ +R + +   
Sbjct: 366 GMSAAPGRPKQANIPSGGSEDTAVPSVGGNTPLAVVDYAHTPDALAQILQALRPLAAQRG 425

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---- 437
           GR+  VFGCGGDRD  KRP+MG+ A   AD  ++T DNPRSE P+ I  +I  G+P    
Sbjct: 426 GRLWCVFGCGGDRDPVKRPLMGEAAARHADRVVLTSDNPRSEPPQAIIEQIQRGLPPGCD 485

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            ++E  +R  AI  A+      DV++VAGKGHE
Sbjct: 486 AWVEP-DRAVAIARALAAAQAPDVVLVAGKGHE 517


>gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
          Length = 494

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLS------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  L  Y  H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AENIQESLQGVSFDFVTPFGTYQVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNELIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|116075053|ref|ZP_01472313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
 gi|116067250|gb|EAU73004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
          Length = 511

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 230/483 (47%), Gaps = 40/483 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR    G +F+ + G + DG  F  Q +A GA A V+ SA +L D  +     
Sbjct: 25  ITALTCDSRCASNGSLFLGLPGERVDGGSFWRQTLADGAAAAVIGSAAALADPPSPADPV 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG- 148
             +             A   Y      ++ VTGT+GK++    ++ IC + G S+   G 
Sbjct: 85  VVVADPVADWAGALAAAFWQYPSRRMTLIGVTGTNGKTTTTHLIEHICDQIGRSAALFGT 144

Query: 149 -----PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                P  +I+S       TT     L   L+   + G    ++E SSH LDQ R+ G +
Sbjct: 145 LVNRWPGHSITSTH-----TTAFADRLQAQLAEAVAGGTQVAAMEVSSHALDQGRVAGCQ 199

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKE---SPAIIYADDAYSKEVMKR 259
             A  FTNL +DH+DYH + QAYF AK RLF E LL  E   + A++  DD + +   K 
Sbjct: 200 FSAAVFTNLTQDHLDYHPSMQAYFEAKARLFAEPLLMAEGEGARAVVNVDDPWGQ---KL 256

Query: 260 AHNAGCRVLSV---------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A   G R             G +     L    A  + + VT +  G    F  PL G F
Sbjct: 257 ADQLGERCWRCSLEPERHPGGVELTMTDLTMTSAGVSGEIVTPAGRGA---FQSPLVGAF 313

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-----RIYVDYAHT 365
            + N L A G+ +  G+  ALVL+       VPGR E V   S         + VDYAHT
Sbjct: 314 NLMNLLEAVGVLVQQGMPLALVLQAAACFKGVPGRMERVMLGSDQAMADLPSVLVDYAHT 373

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L   L   R    G ++ VFGCGGDRD+GKRP M  +A +L+D  +VT DNPR+EDP
Sbjct: 374 PDGLRNALLASRPFVKGDLVCVFGCGGDRDRGKRPQMAAVAAELSDRVVVTSDNPRTEDP 433

Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           ++I  +++ GIP     +   +R  AI   I      D++++AGKGHE   I+  G  K+
Sbjct: 434 QQILDDVVAGIPAEASLVVDVDRASAIADVIAEAGADDLVLIAGKGHEDYQIL--GTTKI 491

Query: 483 SVD 485
             D
Sbjct: 492 HFD 494


>gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 509

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 155/479 (32%), Positives = 228/479 (47%), Gaps = 62/479 (12%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS----AYSLQDFSATIR 87
           E+SSDSR I AG +F A  G+  DG  FI  AI +GA A+V  +     +   DF     
Sbjct: 20  ELSSDSRSIVAGDVFFAYPGDAADGRRFIDDAIERGAVAVVCEADGLVWHGAADF----- 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P+L V   +      A+  YG+    +  +A+TGT+GK+S + ++     R      
Sbjct: 75  ---PLLAVTGLKAHAGRVAALWYGQADAGLFTVAITGTNGKTSCSQWLAAALSR------ 125

Query: 146 QIGPTSTISSFAQD-------NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             GP + I +           +RL     TTP  I L + L  L   G + +++EASS G
Sbjct: 126 LTGPCAVIGTLGTGLFRRGSVDRLAETGYTTPDAILLQRRLRDLRRAGASALAIEASSIG 185

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           LDQ RL+G+ +    FTN  RDH+DYH     Y  AK  LF++  P    A++  DDA  
Sbjct: 186 LDQGRLNGLPVQVALFTNFTRDHLDYHGDMATYEAAKTALFDQ--PGLQHAVLNLDDAMG 243

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------- 305
             ++        ++   GY    +    +  +     +  S  G  F  +          
Sbjct: 244 LRLLAHLQRTAPQLALTGYTLTDLQPAGITVLR-AGDIRSSHAGTSFQLMTAAGTMLVRT 302

Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYA 363
            L G F V N L   G+ +A       +++ +E L  VPGR  +F G ++    + +DYA
Sbjct: 303 RLVGSFNVSNVLGIIGVLLAQDCPLRAIVDAIETLTAVPGRMQQFGGQDAP--LVVIDYA 360

Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           HT ++L+  L  ++ + +   G++  VFGCGGDRD GKRP MG  AL  AD  I+T DNP
Sbjct: 361 HTPDALDKTLAALQQVAAQRHGKLWCVFGCGGDRDPGKRPQMGLAAL-AADEIIITSDNP 419

Query: 421 RSEDPEKIRAEII---------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           RSE    I A+ +         H +P  IE  +R  AI  A+      DV+++AGKGHE
Sbjct: 420 RSEVAAAIIAQTLQGTDERADSHAVPLVIE--DRAAAILWAVRHAANADVILLAGKGHE 476


>gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 494

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  L  Y  H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
          Length = 519

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 226/461 (49%), Gaps = 36/461 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR ++ G IF+A  G   DG + + +A+A+GA A +V      +   A       +
Sbjct: 35  LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAACLVER----EGVEAFRFGAEGV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQ---QICQRSGLSSFQI 147
             + + +    L A+  +G   +  +++AVTGT+GK+S   ++     +   SGL++   
Sbjct: 91  AALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTSTTWWIADALNLLAGSGLATH-- 148

Query: 148 GPTSTISSFA-------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G    I +         Q   LTTP P+ L +A +   + G+   ++EASS GL +HRL 
Sbjct: 149 GGCGLIGTLGVGVPPSLQGTGLTTPDPVRLQQAFAGFVANGLGACAIEASSIGLAEHRLA 208

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G++L    FTN  +DH+DYH    AY+ AK  LF+   P    A++  DD    E+    
Sbjct: 209 GMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFD--WPGLQAAVVNIDDPRGGELSDTL 266

Query: 261 HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + +    G   +  + V       + T++   +       + G + ++N L   
Sbjct: 267 AQRPIDLWTTSITGPARLQARDVTWGEGGLRFTVAEGVQAHVLQTRVIGHYNIHNLLAVV 326

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A+GI     L    +L  VPGR E +    +   + VDYAHT ++LE  L+ +R +
Sbjct: 327 ASLRALGIPLEHALWACAQLAPVPGRMELIHEPGQP-LVAVDYAHTPDALEQALQALRPV 385

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+  VFGCGG+RD+ KRP+MG+IA   AD  IVT DNPR+E P  I  EI+ G 
Sbjct: 386 AEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADAVIVTSDNPRNEAPGAILHEILLG- 444

Query: 437 PGFIEKGNRIEA-------IRTAIEMLNKQDVLVVAGKGHE 470
                 G  ++A       I  AI   + +DV+++AGKGHE
Sbjct: 445 ---TVAGTTVQAEPERDAAIARAIADADGRDVVLIAGKGHE 482


>gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
 gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
          Length = 501

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 227/477 (47%), Gaps = 47/477 (9%)

Query: 23  MQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           +QW RER    + +DSR +  G  F+A  G   DG   +  A+ +GA A +V     ++ 
Sbjct: 12  VQWLRERVTGTLQTDSRLVAPGDGFIAWPGAATDGRAHVADAMVRGATACLVEQT-GVEA 70

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ 138
           F  T      +  +   +      A++ +G HP     +LAVTGT+GK+S A ++     
Sbjct: 71  FGFT---GEHMAALPGLKAATGPMAAQWFG-HPAQHLAVLAVTGTNGKTSTAWWLAGAL- 125

Query: 139 RSGLSSFQI-GPTST---------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            + LS  ++  PT           +    +   +TTP P+ L +A    + QG+   ++E
Sbjct: 126 -NSLSKQELHAPTRCALVGTLGMGVPPALESTGMTTPDPVRLQRAFRQYADQGLGACAIE 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASS GL + RLDG  +    FTN  +DH+DYH +   Y+ AK  LF+   P    A+I  
Sbjct: 185 ASSIGLAESRLDGTPIRVAIFTNFTQDHLDYHGSMADYWLAKRALFD--WPGLQAAVINV 242

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----- 303
           DD    ++          + S+   G         A    Q + +  +G  F  +     
Sbjct: 243 DDPAGAQLHAELTGGALDLWSISAHG--------AARLAAQDIALGPQGLRFTVVEGAQR 294

Query: 304 FPLP----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            PL     G + V N L       + G+  A  +     L  VPGR + +    +   + 
Sbjct: 295 VPLQTRVIGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRLVAPGQP-LVA 353

Query: 360 VDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           VDYAHT ++L+  L+ +R +     G++  VFGCGGDRD GKRP+MG +A   AD  +VT
Sbjct: 354 VDYAHTPDALDKALQALRPLAVERGGQLWCVFGCGGDRDAGKRPLMGAVAQQHADWVVVT 413

Query: 417 DDNPRSEDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            DNPRSE+P  I  +I+ G I G   +   +R  AI  AI   +  DV+++AGKGHE
Sbjct: 414 SDNPRSEEPAAILHQILQGTIAGETVRAEPDRAAAIALAIGEADAADVVLIAGKGHE 470


>gi|312795056|ref|YP_004027978.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166831|emb|CBW73834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (EC 6.3.2.13) [Burkholderia rhizoxinica HKI 454]
          Length = 510

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 156/498 (31%), Positives = 237/498 (47%), Gaps = 35/498 (7%)

Query: 12  PELINQLSIFPMQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           PE I ++    + W   ++    ++  DSR + AG  FVA   +  D   +I  A+ +GA
Sbjct: 8   PEQIERVRAEVLAWLRARLAPHAQLRVDSRAVCAGDAFVAYAVDSADSRAYIADALQRGA 67

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGK 126
            A++V +               P+L V    +     AS  YG+   ++L V  TGT+GK
Sbjct: 68  AAVLVQAGGEFP-------GGGPVLQVPELDQLAGHIASAWYGEPSRDMLMVGITGTNGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ + +V      SG     IG   T +         TTP    +  +L+ L + G + V
Sbjct: 121 TTTSHWVAGALSGSGTRCAIIGTLGTGLPGQLSPTGFTTPDAPQVHHSLAALRAHGASAV 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E SSH L Q R++G+      FTNL +DH+DYH+   +Y  AK RLF+   P    A+
Sbjct: 181 SMEVSSHALHQGRVNGVAFDIAVFTNLTQDHLDYHKDLASYEAAKARLFD--WPGLRAAV 238

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEG 297
           I  DD   + ++   H A  RV ++ Y            +H   + A       T+  + 
Sbjct: 239 INRDDEAGRRLI--GHLA-TRVRTISYGIASTRPRGDASLHAMAIRATATGTAFTVVSDW 295

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +      G F V N L   G+ +A  +     L  + +L  V GR + +G   +   
Sbjct: 296 GHAELEVGTLGLFNVANLLAVLGVLLAADVPFDAALSQITRLEPVNGRMQQLGGRPQVDE 355

Query: 358 --IYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             + VDYAHT ++LE  L  +R I +   G+++ VFGCGG+RD  KRP+MG IA  LAD 
Sbjct: 356 PLVVVDYAHTPDALEKTLDALRPIATQRGGKLVCVFGCGGERDATKRPLMGAIAERLADS 415

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            IVT DNPRSE P  I  +I+  +  P  +    +R  AI  A+   +  DV+++AGKGH
Sbjct: 416 VIVTSDNPRSEPPLAIIGQIVSAMREPARVRTIEDRAGAILQAVRGASAADVVLIAGKGH 475

Query: 470 ETVHIVTNGEKKMSVDCD 487
           E    V  G+K+   D D
Sbjct: 476 EATQEVM-GKKRPFSDQD 492


>gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila psittaci RD1]
 gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila psittaci 6BC]
          Length = 483

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 155/512 (30%), Positives = 252/512 (49%), Gaps = 52/512 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++S         ++  ++ DSR++  G IF+A  G   DG+ F 
Sbjct: 1   MNLKELLHNTKAKIYGKIS-------SVEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
             AI  GA A+  S           I S+ P L  D         A++ YG HP     +
Sbjct: 54  HLAIENGAIAVASSIYNPFLPVVQIISSDLPQLEAD--------LAAKYYG-HPSQKLCV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALS 175
           + +TGT+GK++V+  ++ +       +  IG    I  +S  QD   TTP    L K L+
Sbjct: 105 VGITGTNGKTTVSHLIKFLFDACDKPAGLIGTIEHILGNSRIQDG-YTTPESCLLQKYLA 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +    ++   +E SS GL  +RL  +    G  TN+  DH+D+H + + Y  AK++LF 
Sbjct: 164 EMVKSNLSAAVMEVSSIGLAVNRLANVHFDVGVLTNITLDHLDFHSSFEEYKQAKLKLF- 222

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +LP    A++  D  Y+ + ++       + ++ G +          A +    +  S 
Sbjct: 223 SMLPSSGLAVVNNDLHYAAQFIEATQ---AQPITYGIEQH--------ADYRASNLRFSP 271

Query: 296 EGKDFDFLF---------PLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGR 345
            G DFD L+         PL G+  +YN L A  +    +G D   ++  +  +    GR
Sbjct: 272 FGTDFDLLYKGETFACSSPLIGQHNIYNVLAAISVAHQRLGCDLQQLISAVANVETPRGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMG 403
            E V +      IY+DYAHT ++L+ + K ++ +    GR+IVVFGCGGDRDQ KR IM 
Sbjct: 332 LEPVFSGP--CPIYIDYAHTPDALDNVCKTLQALLPQDGRLIVVFGCGGDRDQSKRKIMA 389

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDV 461
           ++ ++    A+VT DNPR EDPE I  EI  G     F  + +R +AI  A+ + + +D+
Sbjct: 390 QV-VEKYGFAVVTTDNPRGEDPEMIINEICSGFFKRNFSIEIDRKQAITYALSIASDRDI 448

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++VAGKGHET  I  +       D +I+ E+L
Sbjct: 449 VLVAGKGHETYQIFKHQTIAFD-DKEIVLEVL 479


>gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
          Length = 491

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 215/453 (47%), Gaps = 30/453 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS----SAYSLQDFSATIRS 88
           + +DSR +Q G  F+A  G   DG  F+ QA+  GA   +V      A+  +D       
Sbjct: 24  LRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVELDGVEAFGFEDARVATLP 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-----LS 143
           +   +  D    +    + RL       ++A TGT+GK+S A +  Q   R G     + 
Sbjct: 84  DLKAVTGDIAHAYFEHPSQRL------KLVATTGTNGKTSTAWWTAQALTRLGQRCGVMG 137

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  +G    + +      LTTP P+ L  A      QG    ++EASS G+ +HRLD  +
Sbjct: 138 TLGVGEPGAVRATG----LTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAE 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTN  RDH+DYH T  AY+ AK RLF    P    A+I  DD     +       
Sbjct: 194 IDVALFTNFTRDHLDYHGTMAAYWEAKRRLFA--WPGLKAAVINVDDEQGARLAAEPLAL 251

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                +V    + +  + V  +      T+       +    L GE+ V+N L   G   
Sbjct: 252 DVWTYAVNGAARLV-ARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLR 310

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
           A+G+  A     +  L  VPGR + V        + VDYAHT ++LE +L+ +R + +  
Sbjct: 311 ALGVALADAAAVVPALTPVPGRMQRVPGEHV--EVVVDYAHTPDALEKVLQALRPLAAAR 368

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR+  VFGCGG+RD  KRP+MG IA  LAD  + T DNPR E P  I ++I+ G+ G  
Sbjct: 369 GGRLWCVFGCGGNRDATKRPLMGAIAARLADRVVATSDNPRDEAPCFILSQILAGVAGHD 428

Query: 441 EKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           E     +R EAI  A+      DV+++AGKGHE
Sbjct: 429 EVDVIEDRHEAIAYAVANAAPGDVVLLAGKGHE 461


>gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
 gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
          Length = 493

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 151/490 (30%), Positives = 231/490 (47%), Gaps = 42/490 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   FP              E+   +++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWFPYA-----------GEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVV-SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR--LYGKHPENI 117
            +A+AQG  A++V + +   Q    T      I      ++  ++ A R  +       I
Sbjct: 51  DKALAQGVTAVLVHTDSIEEQGKVITTEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYL 170
           + +TGT+GK+S +    Q+C +  L +   G  + + +          D+  TT   I L
Sbjct: 111 VGITGTNGKTSTS----QLCAQ--LVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITL 164

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L   + +GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  AK
Sbjct: 165 MRQLHEFAGKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAK 224

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ- 289
             LF          ++  DD      +    N   ++     +    H +      N Q 
Sbjct: 225 QMLFR--FDALRHGLVNLDDPVGAAWLSELANVPAKMWGFSIEA---HTEAAFYTKNAQF 279

Query: 290 -----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                Q T+     + D   PL G F + N L A       G+D   +   +  L  V G
Sbjct: 280 NDQGVQATLVWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAG 339

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E   T +    + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+
Sbjct: 340 RMERF-TTADNITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQ 398

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDV 461
            A   AD  +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      DV
Sbjct: 399 AAEQCADRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDV 458

Query: 462 LVVAGKGHET 471
           +++AGKGHET
Sbjct: 459 ILLAGKGHET 468


>gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306937|pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306938|pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306939|pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis
 gi|303324784|pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324785|pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324786|pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324787|pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
          Length = 535

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 229/461 (49%), Gaps = 28/461 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 59  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +   G+FTNL RDH+D+H +   YF A   LF+ +   +   A++  DD   + +  RA
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAXASLFDPDSALRARTAVVCIDDDAGRAMAARA 293

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +A    ++V    +  H +           +Q   I   G        LPG + V N L
Sbjct: 294 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  +   +G+     +  L ++ V PGR E +    +G    VDYAH   +L  +L  +
Sbjct: 350 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 407

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
                 R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G 
Sbjct: 408 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 466

Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 467 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 507


>gi|118618800|ref|YP_907132.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium ulcerans Agy99]
 gi|118570910|gb|ABL05661.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium ulcerans Agy99]
          Length = 559

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 223/467 (47%), Gaps = 42/467 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIR 87
           I  ++  ++ +Q G +F A+ G+   G      AI +GA A++   A  +   SA   + 
Sbjct: 82  ITGMTLRAQAVQPGDLFAALAGSATHGARHTADAIERGAVAVLTDPA-GVTAISALGCVP 140

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSS 144
              P+LV    R  L   A+ +YG HP + L V G +G S   +    V+   + +G  +
Sbjct: 141 GTVPVLVHPAPRGVLGEAAALVYG-HPSDRLTVVGITGTSGKTTTTYLVEAGLRAAGRVA 199

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     I      + LTTP    L   L+ +  +GV  V +E SSH L   R+DGI+
Sbjct: 200 GLIGTIGIRIDGADIPSTLTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALTLGRVDGIR 259

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHN 262
              G FTNL RDH+D+H T   YF AK  LF+        +++   DD   + +  RA  
Sbjct: 260 FAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPASALRGHSVVVCIDDEAGRAMADRAGV 319

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL----------PGEFQV 312
           A    ++V   G+  H +            +   G++F  L P           PG + V
Sbjct: 320 A----ITVSATGQPAHWRAT------DVAPVGAGGQEFTALDPAGVGHRVRIGSPGHYNV 369

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLE 370
            N L+A  +  A+G+        L +  V PGR E V    RG      VDYAH   +L 
Sbjct: 370 SNCLLALAILDAVGVSPEQAAPGLRETRV-PGRLEQV---DRGQDFLALVDYAHKPGALR 425

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L  +R     R+ VVFG GGDRD GKR  MG+IA +LAD+ +VTDDNPR EDP  IR 
Sbjct: 426 EVLSTLRNPQR-RLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTDDNPRGEDPGAIRR 484

Query: 431 EIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            I+ G          +E  +R EAI  A++     DV+++AGKGHET
Sbjct: 485 TIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHET 531


>gi|33866222|ref|NP_897781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 8102]
 gi|46576934|sp|Q7U5L3|MURE_SYNPX RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639197|emb|CAE08205.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. WH
           8102]
          Length = 500

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 239/483 (49%), Gaps = 29/483 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P    + ++  ++SDSR +  G +F+ + G + DG  F  QA+  GA A V+  + + +
Sbjct: 16  LPAGLADPQLTSITSDSRLVGEGSLFLGLPGERFDGGRFWRQALEAGAAAAVIGPSAAQE 75

Query: 81  DFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQ 135
              A   ++ P+LV+     R    L AS  Y  HP   +A+ G +G +   +    ++ 
Sbjct: 76  LPPA---ADQPVLVLREPVARSIGELAAS--YWGHPCRRMALIGVTGTNGKTTTTHLIEH 130

Query: 136 ICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +  R G  +   G   +    ++     TT     L   L+  +S G    ++E SSH L
Sbjct: 131 LAVRVGQPTALFGTLVNRWPGYSITATHTTSVADRLQAQLAEAASAGSQLAAMEVSSHAL 190

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESP-AIIYADDAY 252
            Q R+ G +     FTNL +DH+DYH T ++Y+ AK RLF   LL  + P A++  DD +
Sbjct: 191 VQERVAGCRFAGAVFTNLTQDHLDYHGTMESYYEAKARLFTAPLLDGDGPSAVVNGDDPW 250

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGE 309
              +   A   G R            L+ V      Q V    +S  G    F  PL G 
Sbjct: 251 GSRL---AEQLGGRCWRSSLGDPQAELQMVDLEMTGQGVRGRLLSPAGSGA-FCSPLLGR 306

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHT 365
           F + N L A G+ +  G+  A +LE +     VPGR E V  N         + VDYAHT
Sbjct: 307 FNLMNLLQAVGVLLQRGLPLAPLLEAVGSFRGVPGRMERVVVNGAESAALPTVLVDYAHT 366

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE  L   R  T GR++ VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+EDP
Sbjct: 367 PDGLENALAASRPFTDGRLVCVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTEDP 426

Query: 426 EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           ++I A+++ G+P   +   + +R  AI  AI   +  D++++AGKGHE   I+  G +K+
Sbjct: 427 DQIIADVVAGMPSGTDLSVERDRATAIAEAIADASAADLVLIAGKGHEDYQIL--GTEKV 484

Query: 483 SVD 485
             D
Sbjct: 485 HFD 487


>gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS195]
 gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS195]
 gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS678]
          Length = 499

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 227/467 (48%), Gaps = 33/467 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FS 83
           +  ++++ DSR I+ G +F+A+ G+K DG  FI +A+   A A++V +  + Q      S
Sbjct: 18  QSFSDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLSAAAVLVHTDDADQHGKVLHS 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138
                   I V   +R+  ++ A R    H        ++ +TGT+GK+S +  + Q+  
Sbjct: 78  DNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  +  +G     +     D+  TT   I L + L    +QG +  ++E SSHGL Q 
Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+D +      FTNL RDH+DYH   ++Y  AK  LF          ++  DDA     +
Sbjct: 198 RVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FSTLGHGLLNLDDAVGASWL 255

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               +   ++     +G      +  A + K       +G     ++P  GE Q+++ L+
Sbjct: 256 TELKSVPAQMWGFSIEGH-----QAAAFYTKN-AKFDDQGVSATLVWP-EGETQIHSPLL 308

Query: 318 AAGLCIAI----------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            A     +          G D   + E ++ L  V GR E   T +    + VDYAHT +
Sbjct: 309 GAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTANNITLVVDYAHTPD 367

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E  L  +R    G +  VFGCGGDRD+GKRP+MG+ A   AD  +VT DN RSEDP +
Sbjct: 368 AIEQALNALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAEQYADRIMVTSDNARSEDPAQ 427

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I  +II G+      + + +RI AI+  + +    DV+++AGKGHET
Sbjct: 428 IITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474


>gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
 gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
          Length = 488

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 236/465 (50%), Gaps = 34/465 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++++  DSR +Q   +FV I G   DGH +  +A+  GA  +V      L +  A +  
Sbjct: 22  QVSDIVIDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGETIAQV-- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC----QRSGL 142
                +V +T + + L A++ +    ++I  + VTGT+GK+SV   +Q I     ++S L
Sbjct: 80  -----IVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMGEKSAL 134

Query: 143 SS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           S    F +      S+    + L+T   I+ AK       +G   +++E SSHGL   RL
Sbjct: 135 SGTIGFNLNGILYESANTTSDALSTQQMIFRAKM------EGCRLMTMEVSSHGLALGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256
            G+      FTNL  DH+D+H T + Y +AK  LF +L   L K    ++ ADDA+S+  
Sbjct: 189 AGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE-- 246

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN 314
            + A      V + G + +    + +   ++    +  VE  +  +     L GEF +YN
Sbjct: 247 -RYAAMTPFPVWTYGLKNENADFRAINCEYHDYMTSFDVEMPEGIYRVKMNLLGEFNIYN 305

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G     ++E +E+L  V GR E V  +    +I++DYAHT +++E  ++
Sbjct: 306 VLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKV-CSELPVQIFIDYAHTPDAIEKAIE 364

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    G++I + G GG+RD+ KRP M + A   A+  I+T D+PR ED + I  ++  
Sbjct: 365 AAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKA-SAAEYVILTTDDPRYEDYDSITGDLAK 423

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           G+    +   G+R EA+R A+E+    D+++ AGKGHE   I+ N
Sbjct: 424 GMLHDNYACIGDRAEAVRHAVEIAEPGDMIIFAGKGHEDYQIIEN 468


>gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O11]
 gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O46]
          Length = 494

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 147/472 (31%), Positives = 236/472 (50%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  L  Y  H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSE 246

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
            +          V S G   +   + K     N Q+   S++G  FDF+ P         
Sbjct: 247 YLTTVTP---YEVFSYGIDEEAQFMAK-----NIQE---SLQGVSFDFVTPFGTYPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
 gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
          Length = 477

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 150/470 (31%), Positives = 228/470 (48%), Gaps = 24/470 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V++DSR I+ G +FVAI G + DGH FI +AI  GA  IV++   +  D    I+ 
Sbjct: 22  EITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQIDGINYIKV 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +   + +      +  F S+        ++ VTGT+GK++ +S +  I +        IG
Sbjct: 82  DDARIALAQISNVVCDFPSKKL-----RVIGVTGTNGKTTTSSMISHILEHLNSPCTNIG 136

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T I+    +   TTP    + K L     + + +  VE SSHGL  HRLDGI     
Sbjct: 137 TNGTFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVECSSHGLYLHRLDGIDFDVA 196

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            F NL  +H+D+H+  + YF+AKM LFE    K    I   DD Y ++   R  +     
Sbjct: 197 VFNNLSMEHMDFHKNMENYFDAKMILFENAKKK----IANVDDEYGRKAKARFED--TYT 250

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +  F   + V  I  K    I    K+  F+      F VYNA+ A      +G 
Sbjct: 251 FSLENESDF-RAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIAAVNLLGY 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   + + LE    V  RFEFV  N RG  I +D+AHT  + E I K++      R I V
Sbjct: 306 ELEDIAKALESFTGVEARFEFVN-NDRGINIVIDFAHTPKAFENIYKSVP--NDKRKIAV 362

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443
           +G  GDR +  R  +GKI+ +    ++VT D+P+ +  E I  +I+ GI      F+   
Sbjct: 363 YGMSGDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSGIEEANGEFVRIK 422

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AI+ AIEM +K D +++ GKG ET   +   EK    + + + E+L
Sbjct: 423 DRKSAIKHAIEMADKGDFVLLLGKGQETFIKLKGNEKTPYSEKETVNEVL 472


>gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 494

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  LY    H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 494

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 234/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFV---QQICQRS- 140
            +N   +VV +T +  S+ A  LY    H      VTGT+GK+S+A+ V   Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMVHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T + Y +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase
           [Aromatoleum aromaticum EbN1]
 gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase
           [Aromatoleum aromaticum EbN1]
          Length = 502

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 229/457 (50%), Gaps = 29/457 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR +Q G +F A  G   DG  ++  AI +GA A++   +  ++  + ++    P 
Sbjct: 23  ITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAAAVLWDDSDGMRLEALSV----PA 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V   R      A  ++G     +    VTGT+GK++V+ ++       GL    IG  
Sbjct: 79  LPVSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQWLAAALAGLGLRCGVIGTL 138

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    D+  TTP  + + + L+   ++     ++E SS GLDQ R++G++     F
Sbjct: 139 GCGFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAMEVSSIGLDQERVNGVEFDVAVF 198

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH + ++Y  AK RLF+  LP    A+I  DD +     +R   +G  V  
Sbjct: 199 TNLTRDHLDYHSSMESYAVAKARLFD--LPGIGAAVINFDDDFGLAQARRLAASGMPV-- 254

Query: 270 VGYQGKFIHLK------KVCAIHNKQQV------TISVEGKDFDFLFPLPGEFQVYNALV 317
           +GY  +F+         +V    ++Q V       +  +G        +   F V N + 
Sbjct: 255 IGYT-RFVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHHTVQVRMVAPFNVSNLMA 313

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G  +   +    ++  + +L    GR + VG       + +DYAH+ ++L  +L+ +R
Sbjct: 314 VIGSLLVRDVPMDDIVRSVSRLTPPAGRMQLVGGVGEP-LVVIDYAHSPDALAQVLEAVR 372

Query: 378 TIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +      GR++ VFGCGGDRD GKRP+MG +A  LAD  IVT DNPRSEDP KI   I+ 
Sbjct: 373 STAQGRGGRLVCVFGCGGDRDAGKRPMMGDVARALADRVIVTSDNPRSEDPLKIIDAIVR 432

Query: 435 GIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           G     E+  +R +AIR A+      DV+V+AGKGHE
Sbjct: 433 GAGPNAERIVDRAQAIRIAVGEAGANDVIVLAGKGHE 469


>gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
 gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
          Length = 526

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 226/464 (48%), Gaps = 43/464 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VSSD    ++ W+FVAI G K+ G  F   AI  GA  ++       Q F   +    P+
Sbjct: 50  VSSDD--CESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGL--GVPV 105

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ-QICQR------SGLS 143
           + V + R  +    + +Y      +  +AVTGT+GK++ +  ++  I  R       G  
Sbjct: 106 IQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGTV 165

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +GP S      +  R T  +P+   +LA    Y    GV    +E S+H L  HR+D
Sbjct: 166 ETHVGPISF-----EAVRTTAEAPVVARFLAATEQYECGAGV----IELSAHALSLHRVD 216

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKR 259
           GI     +FTNL  DH+DY+   + YF AK  LF    P+ S   ++  DD + + + ++
Sbjct: 217 GIVFDVAAFTNLQHDHLDYYGDMENYFQAKALLF---TPEHSRHGVVCVDDEWGRRLAQQ 273

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNAL 316
           A      V ++  +     ++ V       +   ++    G       P+ GE  + N  
Sbjct: 274 ATVPVTTVSALTEETADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTA 333

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILK 374
           VA    +++GID A V+  +E    +PGR E V     GG+  + VDYAHT  +LE  L+
Sbjct: 334 VAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTP-GGQPLVIVDYAHTPEALEWTLR 392

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           + R +TSGR++VVFG  GDRD  KR  + +IA   AD+  VTD+NPR+E P++IR  ++ 
Sbjct: 393 STRELTSGRVVVVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQEIRDYLLR 452

Query: 435 GI----PGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           GI    PG  +       R +A+R AI      D +++ GKG E
Sbjct: 453 GIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAE 496


>gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 534

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 156/502 (31%), Positives = 243/502 (48%), Gaps = 47/502 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L D++ +     I   ++ P    +  +  V  DSR +  G IFVA  G +  G  FI
Sbjct: 18  LRLGDVLRE-----IPGAALSPAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117
           P+A+A+GA A++V+   S  D     R   P     +    L+  A+ +YG HP     +
Sbjct: 73  PEAVARGARAVIVARG-SAADTLGAARVEVP-----DVPLALAQAAAVVYG-HPTFTLEV 125

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173
           + +TGT+GK++ A  VQ    R G    Q G   T+     D  +    T+P    LA+ 
Sbjct: 126 VGITGTNGKTTTAHLVQACIDRCG---GQAGIVGTLGYRFGDLDVHASHTSPEADELARV 182

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + + ++G TH+ +E SS  L   R+D ++     FTNL +DH+DYH T +AY  AK RL
Sbjct: 183 AAAMVARGATHLVMEVSSIALAAKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARL 242

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQ 290
           F +L P    A+I  DD + +++++     G    +     ++   +      A     +
Sbjct: 243 FVDLGP--GAAVINVDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVE 300

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAA----------GLCIAIGIDSALVLEHLEKLH 340
           +  S  G       P  GE  + + L+ A           +   +G D       L    
Sbjct: 301 LAHSASGTFIRARTPA-GEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALSSPI 359

Query: 341 VVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            V GR E    ++ G     + VDYAHT ++L  +L ++R +  GR++ VFGCGGDRD  
Sbjct: 360 QVAGRLERC--DAPGADDVIVLVDYAHTPDALARVLASVRALGGGRVLCVFGCGGDRDPL 417

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI 453
           KRP MG+    +AD+AIVT+DNPRSEDP  I   I+ G+       + + +R  AI  A+
Sbjct: 418 KRPQMGEAVGRVADVAIVTNDNPRSEDPRAIADAILPGLAAGRARVVVELDRARAIERAV 477

Query: 454 EMLNKQDVLVVAGKGHETVHIV 475
                 DV+++AGKGHE   I+
Sbjct: 478 LDAEPGDVVLIAGKGHEPYQII 499


>gi|167904396|ref|ZP_02491601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei NCTC 13177]
          Length = 514

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 237/492 (48%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I    SG +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARSGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|261855066|ref|YP_003262349.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
 gi|261835535|gb|ACX95302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
          Length = 519

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 146/482 (30%), Positives = 235/482 (48%), Gaps = 37/482 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR +  G +F A  G + +   FI QA+A GA  +V  + Y+          +  +
Sbjct: 34  ITDDSREVVPGAVFFARSGIQPNIKPFISQALAAGAVLVVTEADYA----------DPRV 83

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGP 149
           + V+     +      +   + ++  I+ +TGT+GK+SVA F+     RSG   +  IG 
Sbjct: 84  IRVEAVHSLVLQMVGHVCAVNFDDLTIIGITGTNGKTSVAQFIAGALSRSGAPHTASIGM 143

Query: 150 TSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             T+ +    + L        TTP  +   +       QG  +V +E SSH L+Q+RL G
Sbjct: 144 IGTLGAGMWSSGLENLQPTANTTPGLLETLRYAVDFIRQGARYVVMEVSSHALEQNRLQG 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-A 260
           + +    FTNL RDH+DYH T   YF AK +LF    P     II  D+A +  + +   
Sbjct: 204 LPIRLAVFTNLSRDHLDYHGTMAEYFAAKTKLFA--WPGLRAGIINFDEAQADVLFEALG 261

Query: 261 HNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             A C    +G         + + +  + A+ N   + +     +      L G F   N
Sbjct: 262 ATADCWAYGLGDPDWRVADCQHVRVTSITALPNGIDIQVRTPLGEARLQPSLVGLFNGAN 321

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            + A    +A+G+     ++ L++    PGR + + T   G R  VDYAHT ++L+ +L+
Sbjct: 322 IMAALAAVLALGMPLETAIKALDQSTPPPGRMQMI-TLPSGARALVDYAHTPDALDQVLR 380

Query: 375 NIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +R     +G+II VFGCGGDRD+GKRP+M   A  LAD  ++T DNPRSE P+ I A++
Sbjct: 381 ALRDHRDAAGKIICVFGCGGDRDRGKRPLMAATAERLADQIVMTADNPRSEAPQAIIADM 440

Query: 433 IHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G+          +R  AI +A+      D +++AGKGHET   +  G++    D  ++
Sbjct: 441 RGGLASPDTASVELDRRAAIESALMQAKAGDWVLIAGKGHETTQEI-QGQRLPFDDAAVV 499

Query: 490 RE 491
           R+
Sbjct: 500 RD 501


>gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
 gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
          Length = 494

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  L  Y  H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N +       + G    ++++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAVMIAVWSKGTSLEMIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|116670126|ref|YP_831059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
 gi|116610235|gb|ABK02959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
          Length = 550

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 162/487 (33%), Positives = 237/487 (48%), Gaps = 51/487 (10%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYS 78
           + P       +  +S +SR +Q G ++VA+ G    G  F+ QA+A GA A+V       
Sbjct: 42  VVPGASSSVPVTGISLNSRTVQPGDLYVALPGAARHGADFVSQAVAAGAVAVVTDDDGAR 101

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFV 133
           L   SA   +  P+LVVD  R  +   A+ +Y   PE     ++  VTGT+GK++   F+
Sbjct: 102 LLALSAD--TPVPVLVVDEPRSAVGGLAALIYQSRPEGGTSPSLFGVTGTNGKTTTTYFI 159

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             + Q  G  +  IG    ++  A   + LTTP    L   L+ +  +G+   S+E SSH
Sbjct: 160 NALLQALGRRTGLIGTIEILAGGAPIPSLLTTPESTDLHALLALMRERGLDAASMEVSSH 219

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +  HR+DG++     FTNL +DH+D H T   YF  K RLF     K   A+I  DD +
Sbjct: 220 AVSFHRVDGVQFDVAGFTNLTQDHLDLHGTMDEYFQTKARLFTPRHAKS--AVITVDDEW 277

Query: 253 SKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-------------EGK 298
            + +   A  AG  V ++   QG         A      VT +              +G 
Sbjct: 278 GRRL---ASAAGIPVTTLATAQG-----NDPAAPAADWTVTAAAPRGLGTEFRLRHRDGS 329

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSR 354
           +      LPG F V NA +A  + +A G++ A +   L++       VPGR + V T   
Sbjct: 330 ELRVHTGLPGSFNVSNAALATVMVLASGVEPATLQAALDEADPFTVAVPGRMQLVSTAPA 389

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                VD+AH  ++L+  L+ +R+   G R+IVVFG  G RDQGKRP MG IA  LAD+ 
Sbjct: 390 A---VVDFAHNPDALQRALEAVRSTEPGSRVIVVFGATGQRDQGKRPAMGAIAARLADVV 446

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLV 463
           I++DD+P  ED   IRA+++ G     E G           R  AIR A+ M   QD ++
Sbjct: 447 IISDDDPHDEDAAAIRADVLAGAREAKESGGLGCTILESYPRDVAIREAVNMAQPQDTIL 506

Query: 464 VAGKGHE 470
           VAG+GHE
Sbjct: 507 VAGRGHE 513


>gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 508

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 232/472 (49%), Gaps = 37/472 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIR 87
           +  +S+D+R ++ G IFVA+ G   DG  FIP AI +GA+A+VV  +Y   LQ       
Sbjct: 29  VTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKGAKAVVVEGSYQPDLQ------- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P+++VDN R   S  A+  +  +P + L V G +G +   +    I      +    
Sbjct: 82  --VPVIIVDNARLAFSRLAAEFW-DNPSHKLKVIGVTGTNGKTTTTYMISSMLESADAST 138

Query: 148 GPTSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           G  +T+        +  +   TTP P  L + L  +   GV +  +E+SSHGL  HRL+ 
Sbjct: 139 GFITTVDYKIANHQWKHEEHSTTPQPDRLHELLYRMLQAGVEYAVIESSSHGLKLHRLED 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKE---SPAIIYADDAYSKEV 256
           +      FTN+  +H++ H T + Y   K RLF+ L   P +      +I  DD  ++  
Sbjct: 199 VAYDVAVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPDKGCGKWGVINLDDPNAQLY 258

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYN 314
           +        +V +   Q +   L       +++ VT  V  +G   +   P+ G++ VYN
Sbjct: 259 IDSTKG---KVFTYSQQDENADLIGNIIRRSEEGVTFRVHYKGNSTEINLPISGDYNVYN 315

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A G+ I   I   +    LE+   VPGR + + +  +   + +DYAHT +SLE +L 
Sbjct: 316 ALAAIGVAITQNIPIDVCKSALERFTGVPGRMQVI-SMGQPFTVVIDYAHTEDSLEKVLI 374

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++  T GR+  VFG  G+RD  KR  MGK+A   AD  I+T+++PR ED  +I  +I  
Sbjct: 375 TLKQRTRGRLFAVFGSAGERDPYKRAPMGKVAAKYADFMILTNEDPRGEDEMQILLDIAE 434

Query: 435 G------IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           G      I G  +I   +R  AI  A+   +  D +++AGKGHET     NG
Sbjct: 435 GARSVGAIEGRDYICIPDRKAAIYEALSRASSGDTVLLAGKGHETTIETKNG 486


>gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
 gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
          Length = 530

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 145/474 (30%), Positives = 242/474 (51%), Gaps = 35/474 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-RSNT 90
           ++ +DSR I  G IF AI+G+ +DG  +I QAI QGA+ +V       +    T   S+ 
Sbjct: 32  DLHNDSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHGDVTFASSDN 91

Query: 91  PILVVDNTRKFLSLFA-SRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + +V   +    LF  ++ Y + P++   ++ +TGT+GK++ +  + Q+     LS++Q
Sbjct: 92  TVAIVKFYQLNQHLFTLTKNYYQAPQDNMTLVGITGTNGKTTTSQLLAQM-----LSAYQ 146

Query: 147 --IGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                  T  + + DN      TTP    L +     S +  ++V++E SSH L Q+R+ 
Sbjct: 147 KTCAVIGTNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQ 206

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                   FTNL RDH+DYH +  +Y  +K ++F         A++  DD  +K+ ++  
Sbjct: 207 ADLFDIAIFTNLSRDHLDYHGSMASYGESKKQIFSA--DSNQVAVVNFDDQQAKKWLENW 264

Query: 261 HNAGCRVL------SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQV 312
                  L      +  Y+  F+  K +   H++  V+ ++     D D   PL G+F +
Sbjct: 265 PKQQTLWLYSRETDNSNYK-NFVTAKGIN--HHRHGVSFTLMSHLGDIDITSPLLGDFNI 321

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A  + +  GI  + +   + ++  + GR E     +    + VDYAHT ++LE  
Sbjct: 322 DNLLAAISVLLIQGIPLSEIPHLVTQVSAIAGRMEATSAKNLATAV-VDYAHTPDALEKA 380

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+  R   +G + VVFGCGGDRD+GKRP+M + A   AD  +VT+DNPRSED + I  +I
Sbjct: 381 LQACRQHCAGELYVVFGCGGDRDKGKRPLMAQAAEKYADHLVVTNDNPRSEDAQLIANDI 440

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKGHETVHIVTNGEKK 481
           + G   P   +    +E  +  ++ LNK    D++++AGKGHE   IV   ++K
Sbjct: 441 VAGFTCPDAEQISIILEREQAVLKTLNKAKPGDIVLLAGKGHEDYVIVAKHDEK 494


>gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 573

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 149/478 (31%), Positives = 239/478 (50%), Gaps = 37/478 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL  +L   P +  +  +  ++ DSR ++ G ++ A+ G +  G  F  QA + GA A++
Sbjct: 68  ELAARLGAAPQESGD--VTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAVAVL 125

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130
              A + +  +    +  P+LV ++ R  +   A+ +YG+   ++L   +TGTSGK++ A
Sbjct: 126 TDPAGAERAAA----TGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTA 181

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186
             V+   + +G S+  IG   T+     D+R+    TTP    L    + +  +GV  V+
Sbjct: 182 YLVEGGLRGAGRSTGLIG---TVEMRIGDDRIKSERTTPEATDLQALFAVMRERGVEAVA 238

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AI 245
           +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF    P+ S   +
Sbjct: 239 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPRRSRLGV 295

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304
           +  DD Y + ++  A        + G+         V     + +   +  +G+      
Sbjct: 296 VNFDDEYGRRLIDEASVPVVTFSAEGHPDADWRAADVEVGPQDSRFTVLGPKGERITARA 355

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361
           PLPG F V N L A       G+D     + +  +  VPGR E V      G+ Y   VD
Sbjct: 356 PLPGPFNVANTLAAIVTLAVAGVDPQTAADGVAAVPGVPGRLERVDA----GQPYLAVVD 411

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH ++++E +L+++R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPR
Sbjct: 412 YAHKTDAVESVLRSLRKVTEGRVHIVLGCGGDRDVTKRGPMGAAAARLADTAVLTSDNPR 471

Query: 422 SEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470
           SEDP  I A ++ G   +P   E+G+ +       AI  A+      D ++VAGKGHE
Sbjct: 472 SEDPLAILAAMLSGAAEVP-VHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHE 528


>gi|296140347|ref|YP_003647590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028481|gb|ADG79251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
          Length = 522

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/404 (34%), Positives = 208/404 (51%), Gaps = 30/404 (7%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
           + P+L+ D+ R  L   A+ +YG  P   + + G +G S   +    V+     +  ++ 
Sbjct: 98  DVPVLLHDDPRSVLGPAAAVIYGA-PSTKMTLVGITGTSGKTTTSFLVEAALGATQATTG 156

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T I+       LTTP    L    + +  QGVT   +E SSH L Q+R+ G + 
Sbjct: 157 LIGTVGTRIAGVDVPTSLTTPEGTALQGLFASMVEQGVTSAVMEVSSHALAQNRVGGTRF 216

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-------PAIIYADDAYSKEVM 257
             G+FTNL +DH+DYH T + YF AK  LF   +P ES        A+I  DD +   + 
Sbjct: 217 AVGAFTNLSQDHLDYHPTMEDYFAAKALLF---VPDESGDGPVCEQAVICVDDEWGNRMA 273

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEG-KDFDFLFPLPGEFQVYN 314
               +AG  +++V   G         + H    Q+ T++  G + F     LPG + V N
Sbjct: 274 DLRRDAGLPLVTVATTGPADWTAGAVSAHADGTQRFTLTGPGGQSFSATVGLPGAYNVAN 333

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMI 372
           A +A  +    G+  A  +  +  +  VPGR + +    RG      VDYAH   +L+ +
Sbjct: 334 AALALVVAHEAGVPLADAVRGIGAV-AVPGRVQRI---DRGQDFLAVVDYAHKPAALDAV 389

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +R  T+GRI VV G GGDRD+GKRP+MG++A   A++ IVTDDNPR+EDP  IRA +
Sbjct: 390 IATLRGQTAGRIAVVVGAGGDRDRGKRPLMGEVAARAAELVIVTDDNPRTEDPAAIRAAV 449

Query: 433 IHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             G   +PG     E G+R  AI  A++     DV+++AGKGHE
Sbjct: 450 RAGAEAVPGGGEVREIGDRRAAITEAVDWARTGDVVLIAGKGHE 493


>gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 483

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 249/467 (53%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR +  G IF+A  G   +G+ +  QA+A GA A V+SS Y+   F + ++  
Sbjct: 23  VRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAIA-VLSSLYN--PFLSVVQ-- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++ ++     +  A+R Y    +  +++ +TGT+GK++V+  V+++ +RSG+ +  I
Sbjct: 78  ---IIAEDPIALEASLAARFYNNPSKHLDVIGITGTNGKTTVSCLVRELMERSGIRTGLI 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI     +NR+    TTP  I L K  + +  Q ++   +E SS G+   R+   +
Sbjct: 135 G---TIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGRVRETE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +AG  TN+  DH+D+H + + Y  AK + F   LP++  A++  D  Y+   +      
Sbjct: 192 FLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS-LPEKGIAVVNLDCEYAPSFLN----- 245

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LFP----LPGEFQVYN 314
           G +  +V Y    IH +   A +   ++ +   G  +D      +FP    L GE  VYN
Sbjct: 246 GSQARAVSYA---IHQE---ADYRADRLKLYSSGSSYDIWYQGKVFPCETSLIGEHNVYN 299

Query: 315 ALVAAGLCIA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            L  A L +    +G D A ++  +  L    GR + +        +Y+DYAHT ++L+ 
Sbjct: 300 VL--ASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLGPF--PVYIDYAHTPDALDN 355

Query: 372 ILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + + +  +    GR+I+VFGCGGDRD+ KRP+M K++ +    + VT DNPR+EDP++I 
Sbjct: 356 VCRILLQLLPKYGRLIIVFGCGGDRDRVKRPLMAKVS-EHYGFSFVTSDNPRTEDPDQII 414

Query: 430 AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE   I
Sbjct: 415 ADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGYQI 461


>gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
 gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
          Length = 494

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/469 (30%), Positives = 231/469 (49%), Gaps = 43/469 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R + ++++DSR  ++G IFVA  G   D H F    I QG + IVV S          +
Sbjct: 20  DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKS-------KQEV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140
             +   ++V  T +  SL A  L+    H      VTGT+GK+S+A+ +  I ++     
Sbjct: 73  EGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI    T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINEQKTKGAN------TTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DDA+S+
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSE 246

Query: 255 EVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPG 308
            +   A      + + G     Q K IH+ +       Q VT  ++    +++   P  G
Sbjct: 247 YL---ASVTPYEIFTYGIDNDAQFKAIHINESL-----QGVTFELDTPFGNYNVQSPYVG 298

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F + N + A     + GI    ++E ++ L  V GR E +  N     I +DYAHT++ 
Sbjct: 299 KFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNLPIDLI-IDYAHTADG 357

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +  ++  ++     ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ +
Sbjct: 358 MNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVAC-RADYVIFTPDNPANDDPKML 416

Query: 429 RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +E+  G     ++E  +R E IR AIE+   +D +V+A KG E   I+
Sbjct: 417 TSELAKGATHDNYVEFEDRAEGIRHAIEVAEPEDTVVLASKGREPYQIM 465


>gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
 gi|156865018|gb|EDO58449.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
          Length = 499

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 154/481 (32%), Positives = 244/481 (50%), Gaps = 36/481 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I E+ +DSR +    +F  IVG   DGH ++   I +GA  +VV      +D       
Sbjct: 22  EIKEIYNDSRKVGEQGLFFCIVGANFDGHAYVKNVIDKGAVCLVVQ-----KDVEPV--P 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
              I+ VD+TR  + + +S  YG +P + L V G +G     +    ++++   +G  + 
Sbjct: 75  GVLIVKVDSTRYAMGIVSSNFYG-NPSSKLTVIGITGTKGKTTTTYMIREMLMSAGHKTG 133

Query: 146 QIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            IG    I      A +N  TTP  + + K L  +   G+  V +E SS GL   R+ G+
Sbjct: 134 LIGTIEIIDGNNVTAANN--TTPESMIVHKKLKDMVDNGLDSVVMEVSSQGLMLDRVAGV 191

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G F+NL RDHI  + H+T + Y   K +LF          I  ADD +   V    
Sbjct: 192 DFDYGIFSNLSRDHIGPNEHKTFEEYAMWKSKLFTMC----KIGIFNADDPH---VDTMT 244

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGK-DFDFLFPLPGEFQVYNAL 316
            +A C++++ G  G + +      ++NK     +   + GK D D L  LPG F +YN+L
Sbjct: 245 EHATCKIVTYGINGDYDYKANNHNLYNKDGHLGIGYHLSGKLDGDVLVNLPGNFSIYNSL 304

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+    + E L+ + V  GR E +  + +   I +DYAH + SL  IL+ +
Sbjct: 305 AAIAVADLMGVPFDKIQEILKTIKV-KGRVELIPISDKF-TIMIDYAHNAVSLMSILETL 362

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R     R++ +FGCGG+R + +R  MG+++ ++AD+ I+T DNPR E+P+ I  +I  GI
Sbjct: 363 REYKPKRLVSLFGCGGNRSKERRYEMGEVSGNMADLTIITSDNPRFEEPQDIINDIKTGI 422

Query: 437 P----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 ++E  +R EAIR AI      DV+V+AGKGHE    +  G K    + D+IRE+
Sbjct: 423 NKTTGKYVEIIDRKEAIRYAIMNAEPGDVIVLAGKGHEDYQEI-KGVKHHMDERDLIREV 481

Query: 493 L 493
           L
Sbjct: 482 L 482


>gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 539

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 151/517 (29%), Positives = 250/517 (48%), Gaps = 49/517 (9%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      + +I  +  DSR +  G +FV + G K DG+ F  QAI +GA 
Sbjct: 12  ELLDEARVTPVAVEGNLDIEITGIQHDSRLVIPGDLFVCVKGLKSDGYEFAHQAIEKGAV 71

Query: 70  AIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSG 125
           AIV SS     +   A++       VV++T   LS  A   YG HP   LAV   TGT+G
Sbjct: 72  AIVSSSEVLPAEGLEASV-------VVEDTNILLSGLAGAFYG-HPSKNLAVVGITGTNG 123

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQ 180
           K++ +  ++ I +  GL   Q G   TI+ +    +      TTP  ++L K ++ +   
Sbjct: 124 KATTSYLIRSIYEAMGL---QAGLLGTINYYINGKKKLEATHTTPDAVHLQKHMASMVHH 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
           G     +E SSH +   R   +      FTNL  D  D+H+++  Y  A  +LF +++ P
Sbjct: 181 GTDACIMEVSSHAMHLGRCKEVDFDVAVFTNLTHDPEDFHKSEDEYKEASGKLFAKMVNP 240

Query: 240 KESPAIIYADDAYSKE-VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++   I+  DD  S   V +   +      ++G +   ++  +V     + ++ +     
Sbjct: 241 EKHRKIVNIDDPQSDYFVTQGNQDVPVVTYAMGNKNADVYPLEVQLSLFESELLVRTPRG 300

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + +    L G   VYN L A  + IA+      ++  +E++  VPGR E +    +   +
Sbjct: 301 NLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELI-DEEQAFAV 359

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+A+T + L  +L  +R     RII V G  GDRD+ KRP+M KIA D +D+ I T D
Sbjct: 360 IVDHANTPDGLSRLLDTVRECGPRRIITVLGSQGDRDKAKRPLMAKIATDKSDVCIFTSD 419

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---------------GNRIE-------AIRTAIEML 456
           NPRSEDP  +  +++ G+   +E+               G+R+        A+R  + M 
Sbjct: 420 NPRSEDPLDVIDDMLAGVGWSMEEYCKWGEDDYYPPLPNGHRLFCYEIRTIAVRAGVAMG 479

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + D +V+AGKGH T  I+ + ++    D +  RE L
Sbjct: 480 EEGDAVVIAGKGHNTYEIIGDNKEYFD-DREECREAL 515


>gi|237813924|ref|YP_002898375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
 gi|237503508|gb|ACQ95826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
          Length = 514

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 236/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   AI+  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAIVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|184201133|ref|YP_001855340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
 gi|183581363|dbj|BAG29834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
          Length = 546

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 156/485 (32%), Positives = 241/485 (49%), Gaps = 63/485 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRSNTPILV 94
           +SR +Q G ++ A+ G +  G  F   A A GA A++   A   L D +     + P+LV
Sbjct: 52  NSREVQPGDLYAALPGAQVHGARFAADAAAAGAVAVLTDPAGERLLDEAGV---SLPVLV 108

Query: 95  VDNTRKFLSLFASRLYGKHP-----ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            +  R ++   A+ +Y  HP     + + AVTGT+GK++   F   I +  G ++  IG 
Sbjct: 109 SEQPRSWVGPVAAAVYDSHPGEEAGQELFAVTGTNGKTTTTYFTTAILRALGHTTGLIG- 167

Query: 150 TSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             TI   A D    +RLTTP   ++   L+ +  +G+T  ++E SSH L+ HR+DG+   
Sbjct: 168 --TIEILAGDTPIPSRLTTPEAPHVHSLLALMRERGITATAMEVSSHALEFHRVDGVHYG 225

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--A 263
              FTNL +DH+D H + + YF AK +LF       +  ++  +D +S  + +RA     
Sbjct: 226 VAGFTNLTQDHLDLHGSMEEYFEAKAQLFTRQRTSRAVVVLSDEDPWSGAMARRAREELG 285

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---------------EGKDFDFLFPLPG 308
              V +V  +G     +      +  Q T+                 +G++      LPG
Sbjct: 286 DANVTTVALRGS----EDAERGQDAAQWTLRSLTRRGIGSAFVLRHRDGRELRVHTGLPG 341

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEK--------LHVVPGRFEFVGTNSRGGRIYV 360
           +F V N    A L + + +DS + LE L++           VPGR E VGT        V
Sbjct: 342 DFNVAN----AALAVLMVLDSGVELETLQRALDEHDPLTASVPGRMELVGTRPTS---LV 394

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AH  ++L   L+++     GR+IVVFG  G RD GKRP+MG++A + AD+ IVTDD+P
Sbjct: 395 DFAHNPDALVRALRSVDP-EDGRVIVVFGATGQRDTGKRPVMGRVAAEEADVVIVTDDDP 453

Query: 421 RSEDPEKIRAEIIHGIPGFIEK----------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +EDP  IR ++  G    +              R  AIRTA+ M   +D ++VAG+GHE
Sbjct: 454 HAEDPAPIREQVAAGAREAVAAGARATDVLVIAPRATAIRTAVRMARAEDSVIVAGRGHE 513

Query: 471 TVHIV 475
           TV  V
Sbjct: 514 TVQDV 518


>gi|167564204|ref|ZP_02357120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis EO147]
          Length = 514

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 232/489 (47%), Gaps = 43/489 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG  F+A   +  D   FI  A+A+GA A++    Y  +  +A       
Sbjct: 30  QLHADTRSLQAGDAFIAYAVDGADNRPFIADALARGAAAVL----YQPEGSAADGLEPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++    P
Sbjct: 86  SLAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIA-----AALTALHQ-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTLEAYEAAKTKLFAWRGLRL--AVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGY----------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              RV ++ Y            + +   KV A        ++    D D      G F V
Sbjct: 255 LAGRVRTIAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNV 314

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370
            N L   G  +A  +     L  +EKL  V GR E +G   +     + VDYAHT ++LE
Sbjct: 315 SNLLAVLGTLLAADVPFDAALAAIEKLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALE 374

Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L  +R I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+K
Sbjct: 375 KTLDALRPIARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQK 434

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I  G+    +     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   
Sbjct: 435 IIDQIAAGMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFS 493

Query: 485 DCDIIREIL 493
           D D  R  L
Sbjct: 494 DQDHARLAL 502


>gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
 gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
          Length = 500

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/469 (30%), Positives = 227/469 (48%), Gaps = 34/469 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++  NE++ DSR I+ G +F+A+ G + DG  FI +A+  GA  ++V +  + Q     +
Sbjct: 17  DQSFNELTLDSRAIRRGDVFLALPGYRVDGRQFIDKALDLGAAGVLVHTDDADQHGKVLL 76

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKH-----PE-NILAVTGTSGKSSVASFVQQI 136
             N      I      R+  ++ A R    H     P   I+ +TGT+GK+S +  + Q+
Sbjct: 77  GDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLGIIGITGTNGKTSTSQLIAQL 136

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                  +  +G     +     D+  TT   I L + L    +QG +  ++E SSHGL 
Sbjct: 137 VTSLRRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFEAQGASVCAMEVSSHGLV 196

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+D +      FTNL RDH+DYH   ++Y  AK  LF          ++  DD     
Sbjct: 197 QGRVDAVPFDVAVFTNLTRDHLDYHGDMESYATAKQSLFR--FSTLGHGLLNLDDPVGAS 254

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +    +   ++     +G      +  A + K       +G     ++P  GE Q+++ 
Sbjct: 255 WLIELKDMAAQIWGFSIEGH-----QAAAFYTKN-TQFDDQGVSTTLVWP-EGETQIHSP 307

Query: 316 LVAAGLCIAI----------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L+ A     +          G D   + E ++ L  V GR E   T +    + VDYAHT
Sbjct: 308 LLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERF-TTADNITLVVDYAHT 366

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  +VT DN RSEDP
Sbjct: 367 PDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAAEQYADRIMVTSDNARSEDP 426

Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +I ++II G+      + + +RI AI+  + +    D++++AGKGHET
Sbjct: 427 AQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLILLAGKGHET 475


>gi|126441714|ref|YP_001060540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
 gi|126221207|gb|ABN84713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
          Length = 514

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 236/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPADGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   AI+  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAIVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LAGRVRTIAYG---IDSPTPAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|167721348|ref|ZP_02404584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei DM98]
 gi|167912657|ref|ZP_02499748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 112]
          Length = 514

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 236/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   AI+  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAIVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|256824045|ref|YP_003148005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
 gi|256687438|gb|ACV05240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
          Length = 528

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 156/496 (31%), Positives = 241/496 (48%), Gaps = 46/496 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-SLQDFSATIR- 87
           I  V+ DSR ++ G  FVA+ G K DG  F   A+A GA  +V    + +  D  A  + 
Sbjct: 48  IAAVTHDSRAVEPGAAFVAVSGFKSDGLRFAASALAGGASLVVAEREWPTAADREADPQI 107

Query: 88  ------SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139
                    P++VV N R+ L L A+ + G    +  +  +TGT+GK++  S+V      
Sbjct: 108 GEIEGAGPLPVVVVPNAREALGLLAAAVNGNPSRSMRVHGITGTNGKTTT-SYVLYNLLA 166

Query: 140 SGLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             L   ++G ++T    I    +    TTP    + + L  +   G +   +E SSHGL+
Sbjct: 167 GILGKDKVGLSTTVEVIIDGVGRPAMRTTPEAPLVQENLRRMVGAGASDAVLETSSHGLE 226

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            HR+ G++  +  FTNL RDH+D H   + YF  K +LFE     E P +   DD Y + 
Sbjct: 227 LHRVTGVEYASAIFTNLTRDHLDIHGDMETYFQVKRQLFER---TEGPRLANVDDDYGRR 283

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV--- 312
           + +    +    L+ GY  +                 +++EG  F    P  GE ++   
Sbjct: 284 LAREFPGS----LTFGYSPE-------ADYQIVDPTDLTLEGMQFTLRTPGHGELRLEPP 332

Query: 313 ----YNAL-VAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAH 364
               YNAL VA  + +A+  G D   V++ ++ L  VPGRF+ +   +  G +  VDYAH
Sbjct: 333 LVGDYNALNVAGAVAVALESGHDPLAVVDAVKGLGQVPGRFQRIAEAADHGFMAVVDYAH 392

Query: 365 TSNSLEMIL---KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           T   LEM+L   + I  +  GR+I V+G  G+RD  KRP+MG++   +AD+ I+T D+P 
Sbjct: 393 TEVGLEMVLTVARKIADMAGGRLICVYGAAGERDAAKRPLMGEVVSRIADVGIITTDDPY 452

Query: 422 SEDPEKIRAEIIHGI-PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            EDP  I  E++ G  P       +R EA+  A+ M  + D+L+  GKG E    +  G+
Sbjct: 453 GEDPVTIADEVMAGADPADTHIVVDRREALLEAVAMARENDLLIACGKGDEPFQHLPEGD 512

Query: 480 KKMSVDCDIIREILGL 495
                D   IRE L L
Sbjct: 513 VDHH-DPTSIREGLSL 527


>gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           denitrificans OS217]
 gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella denitrificans OS217]
          Length = 502

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 229/472 (48%), Gaps = 46/472 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-----SSAYSLQDFSAT 85
           + +S DSR +  G +F+A+ G++ DG  +I QA AQGA A +V      S   +++  + 
Sbjct: 21  SSMSLDSRKVTQGCLFIALPGHQVDGRAYIEQAKAQGAVAALVHTDDPDSHGKVENLGSG 80

Query: 86  IRSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
           I   TP  VV+       LS  A++ Y   P+   ++ +TGT+GK+SV+  + Q+    G
Sbjct: 81  I---TPWPVVNFFQLSSQLSAVAAQFYPLTPQKMALIGITGTNGKTSVSQLIAQLTSLLG 137

Query: 142 LSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +  +G T     + Q  D+  TT   + +   L     +G    ++E SSHGL Q R+
Sbjct: 138 GKAAVMG-TLGNGLWGQLVDSGNTTADAVTVMAQLHDFDVKGADICAMEVSSHGLVQGRV 196

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +      FTNL RDH+DYH    +Y +AK RLF+   P    A++  DD    +  + 
Sbjct: 197 TAVPFDIAVFTNLTRDHLDYHGDMASYASAKKRLFQ--FPSLKYALLNLDDDTGAQWFEE 254

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--------------- 304
                 +  SV    K        A +   ++     G   DF +               
Sbjct: 255 LAATKRKGFSVSPNAK--------ACYYTDKLHFDDAGVQGDFYYHDFGENAVSQHKARL 306

Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G F + N L A       G+  A +L    KL  V GR E   +  +G  + VDY
Sbjct: 307 VSPLLGAFNLSNLLAAIAALHLSGVAMADLLAVTPKLVPVAGRMERF-SLPQGASLVVDY 365

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT +++E  LK +R    G++  VFGCGGDRD+GKRP+M + A   AD  +VT DN RS
Sbjct: 366 AHTPDAIEQALKALRIHCHGQLWCVFGCGGDRDKGKRPLMAQAAERFADKLMVTSDNARS 425

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           EDP  I  +++ G+      + + +R+ A++    +    D++++AGKGHET
Sbjct: 426 EDPSAIIGDVLKGLTQPENALMEVDRVSAVKRVATLAKAGDIVLLAGKGHET 477


>gi|332976289|gb|EGK13149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desmospora sp. 8437]
          Length = 399

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 207/397 (52%), Gaps = 20/397 (5%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171
           H  N++AVTGT+GK++V   ++ I +  G  +  IG  +  I       + TTP  + L 
Sbjct: 6   HDLNLIAVTGTNGKTTVTHLIRNILRECGHETGLIGTINMQIGDETYPVKNTTPDAVELQ 65

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +    +  +G TH  +EASSH L   R  G +     FTNL +DH+DYH T   Y  AK 
Sbjct: 66  RGFRKMVDRGCTHAVIEASSHALHLGRTRGCRFKTAVFTNLTQDHLDYHGTMDHYRAAKG 125

Query: 232 RLFEEL------LPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVC 283
            LF +L        ++ P A++  DD   +  M+       +V++ G +    +  + + 
Sbjct: 126 ILFGQLGNVYTDKAEDQPLAVLNIDDEAGEIYME---TTSAQVITYGVEHPADVRGENIR 182

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 + T++      D    L G+F VYNAL AA + +  GI    + E L ++  VP
Sbjct: 183 FYSGGTRFTLNTYRGSVDIDMKLMGKFSVYNALAAAAVALGEGISLEKIGEVLSRVKGVP 242

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E V    +   + VDYAHT +SLE +L  +R  T G II V GCGGDRD+GKRP M 
Sbjct: 243 GRLEAVDA-GQPFPVLVDYAHTPDSLENVLTTVRGFTKGNIICVVGCGGDRDRGKRPQMA 301

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNK 458
           +IA + ++  ++T DNPR+EDP +I  +++ G+  F E       +R EAI  A+     
Sbjct: 302 RIAAENSNRVVITSDNPRTEDPRRIIDDMLAGVKDFPEDRIQVIPDRAEAIGYAVRHAQA 361

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE-ILG 494
            DV+++AGKGHET   + NG +    D ++ R  ILG
Sbjct: 362 DDVVLIAGKGHETYQEI-NGVRHDFDDREVARTAILG 397


>gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 477

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 250/491 (50%), Gaps = 28/491 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E++  ++    +   E+ I  V+++S+ ++ G+ FVAI GN EDGH +I  AI  GA 
Sbjct: 4   FEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIENGAS 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKS 127
            I+ +   + ++  + I+       V++ R  L+  +++L  Y      I++VTG++GK+
Sbjct: 64  LIIHTEDIAYKEGISYIK-------VEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  V  +       +  IG   + I         TTP    + K ++    + + ++S
Sbjct: 117 TTSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYLS 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E+SSHGLDQ R+ G+ +  G FTNL ++H+DYH+T   YF AKM LF++   K + A I
Sbjct: 177 LESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAKMILFDQ--AKHTVANI 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y K+  +   N     ++ G   +    +    +    +V+  V+G   +F+   
Sbjct: 235 --DDPYGKKAKELYPN----TITYGINNENADYRAENVVKKDGKVSYEVKG--VEFILNT 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             +++VYN L A  +   +G     V + ++K + V  RFE++  N+ G  I +D+AHT 
Sbjct: 287 IADYEVYNTLAATAVVCDMGASLEEVKDAMKKFNGVASRFEYM-ENNLGLNIIIDFAHTP 345

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + E + K++      +I  V+G  GDR++  R   GK   D    ++VT D+P+ +  E
Sbjct: 346 FAYECLFKSVP--QGHKIYAVYGINGDRNKEFRVSTGKACADNDVFSVVTTDDPKFDTVE 403

Query: 427 KIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I  +II GI      ++   +R +AI+ AI   NK D + + GKG E    +   EK  
Sbjct: 404 NISKDIIEGIKSKGGEYVNILDREDAIKYAITHANKGDFIFLLGKGEENFLKLKGNEKTP 463

Query: 483 SVDCDIIREIL 493
             + + ++E+L
Sbjct: 464 YSERETLKEVL 474


>gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus COL]
          Length = 492

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 234/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 19  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  LY    H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 73  -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 131

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 132 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL  ++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 186 RLRSVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 244

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 245 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 294

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 295 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 354 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 412

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 413 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 464


>gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 494

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 144/465 (30%), Positives = 230/465 (49%), Gaps = 39/465 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N++++DSR  +AG IFVA  G   D H F    + QG + +VV+ A  LQ        
Sbjct: 22  EVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQ-------G 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   ++V +T +  S     LYG   + +  + VTGT+GK+S+A+ +  I ++ G  S  
Sbjct: 75  DVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKGSAY 134

Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++  
Sbjct: 135 LGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGVEFD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHN 262
              F+NL +DH+D+H T +AY +AK  LF +L   L ++   II ADD +S   +K    
Sbjct: 195 VAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPFST-YLKSVTP 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVY 313
                  +  + +F+       IH       S++G  FDF+ P           G F + 
Sbjct: 254 YESLTYGIEQEAQFM----ATNIHE------SLQGVTFDFVTPFGTYPVRSPYIGRFNIA 303

Query: 314 NALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           N L+AA L + + G     V + +  L  V GR E +   S    + +DYAHT++ +  +
Sbjct: 304 N-LMAAMLGVWVKGAPLETVTKVVADLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMAKL 361

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +      ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+
Sbjct: 362 IDAVEPFVKQKLIFLVGMAGERDLTKTPEMGRVA-SRADYVIFTPDNPANDDPKMLTAEL 420

Query: 433 IHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             G     ++E  +R E IR AIE+    D +V+A KG E   I+
Sbjct: 421 AKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIM 465


>gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 494

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 234/472 (49%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+    L       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQPLP------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  L  Y  H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
           E ++           +  + +F+           + +  S++G  FDF+ P         
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     +++ +E L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actF]
          Length = 526

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 157/503 (31%), Positives = 248/503 (49%), Gaps = 37/503 (7%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +L   L + P   R      +  ++ DSR ++ G I+ A+ G +  G  F  QA + GA 
Sbjct: 24  DLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAV 83

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127
           A +   A + +  +A +    P+LVV + R  +   A+R+YG   +++L   +TGTSGK+
Sbjct: 84  AALTDPAGAERVLAAGL----PVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKT 139

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           + A  ++   + +G S+  IG   T+ +   D RL    TTP    L    + +  +GV 
Sbjct: 140 TTAYLMEGGLRAAGHSTGLIG---TVETRIGDERLKSERTTPEATDLQALFAVMRERGVD 196

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +LF     +   
Sbjct: 197 AVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRG- 255

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302
            ++  DD Y + ++  A        + G+       + V         T+   +G  +  
Sbjct: 256 -VVNYDDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPA 314

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--- 359
             PLPG F V N L A       G D  +  E +  +  VPGR E V      G+ Y   
Sbjct: 315 RAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDE----GQPYLAV 370

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T DN
Sbjct: 371 VDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDN 430

Query: 420 PRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSEDP  I A ++ G   +P   E+G+ +       AI   +      D +++AGKGHE
Sbjct: 431 PRSEDPLAILAAMLAGAAEVP-VHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 489

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V NG  +   D ++++E +
Sbjct: 490 QGQDV-NGVVRPFDDREVLKEAI 511


>gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 489

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 227/467 (48%), Gaps = 35/467 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + I +++ DSR +Q   +F+ I G   DGH +  +A+  GA  IV      L    A + 
Sbjct: 21  KLITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGATVIVTERLLQLDGEIAQV- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQIC----QRSG 141
                 +V NT + L + A++ +    ++I+   VTGT+GK+SV+  +  I     ++S 
Sbjct: 80  ------IVKNTTRTLGILAAKFFDYPSKDIMMIGVTGTNGKTSVSGIIHNILIGLGEKSA 133

Query: 142 LSS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           LS    F +      S+    + L T   I+ AK      S+G   + +E SSHGL   R
Sbjct: 134 LSGTIGFNLNGVLYESANTTSDSLNTQQMIFRAK------SEGCRAMVMEVSSHGLALGR 187

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKE 255
           L G+      FTNL  DH+D+H T + Y N K  LF +L   L K    ++ ADD +S+ 
Sbjct: 188 LAGVDYDVAVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLNADDPWSE- 246

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYN 314
             + A      + + G     I     C   N   Q  +      F     L GEF +YN
Sbjct: 247 --RYAGMTPYPIWTYGLHNNAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLGEFNIYN 304

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A  +  A G    +++E +E L  V GR E + ++    +I++DYAHT +++E  + 
Sbjct: 305 VLAATAVFYARGFPIEVIIEQIEMLPPVKGRMEKIDSD-LPIQIFIDYAHTPDAIEKAIN 363

Query: 375 NIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
                     ++I + G GG RD+ KRP M + A  +AD  I+T D+PR E+ + I  ++
Sbjct: 364 AAMPYKKPENKLIFLVGTGGGRDKTKRPTMAEKA-SVADYVILTTDDPRYEEFDSITGDL 422

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             G+    +   G+R EA+R A+ + N  D+++ AGKGHE   I+ N
Sbjct: 423 AKGMKHKNYACIGDRAEAVRHAVSVANPGDIIIFAGKGHEDYQIIEN 469


>gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 494

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 144/465 (30%), Positives = 230/465 (49%), Gaps = 39/465 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N++++DSR  +AG IFVA  G   D H F    + QG + +VV+ A  LQ        
Sbjct: 22  EVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQ-------G 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   ++V +T +  S     LYG   + +  + VTGT+GK+S+A+ +  I ++ G  S  
Sbjct: 75  DVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKGSAY 134

Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++  
Sbjct: 135 LGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGVEFD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHN 262
              F+NL +DH+D+H T +AY +AK  LF +L   L ++   II ADD +S   +K    
Sbjct: 195 VAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPFST-YLKSVTP 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVY 313
                  +  + +F+       IH       S++G  FDF+ P           G F + 
Sbjct: 254 YESLTYGIEQEAQFM----ATNIHE------SLQGVTFDFVTPFGTYPVRSPYIGRFNIA 303

Query: 314 NALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           N L+AA L + + G     V + +  L  V GR E +   S    + +DYAHT++ +  +
Sbjct: 304 N-LMAAMLGVWVKGAPLETVTKVVADLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMAKL 361

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +      ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+
Sbjct: 362 IDAVEPFVKQKLIFLVGMAGERDLTKTPEMGRVA-SRADYVIFTPDNPANDDPKMLTAEL 420

Query: 433 IHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             G     ++E  +R E IR AIE+    D +V+A KG E   I+
Sbjct: 421 AKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIM 465


>gi|222825170|dbj|BAH22327.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Wolbachia endosymbiont of Cadra cautella]
          Length = 284

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/276 (41%), Positives = 167/276 (60%), Gaps = 9/276 (3%)

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +DYH++   YF AK RLF+E+LPKE  AI+ AD     E++  A   G +V++ G +   
Sbjct: 1   MDYHKSIDEYFEAKKRLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNKVITYGKKNSD 60

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I L K     N Q +TI +  + ++  FP+ G+FQ YN L A G+ I+ G+D   +   +
Sbjct: 61  ITLLKQIPTANGQYLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQRMC--I 118

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           +KL    GR E V T +     +VDYAHT ++L+  L +++   + +I++VFGCGG+RDQ
Sbjct: 119 DKLASPSGRMEKVNTFA-----FVDYAHTPSALKQALLSLKWHFNKKIVLVFGCGGNRDQ 173

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            KR  MGKIA  LA   IVTDDNPR EDP KIR +I+   P  +E G+R +AI   I + 
Sbjct: 174 TKRAEMGKIAQMLAGKVIVTDDNPRDEDPGKIRHDILLHCPDALEIGDRKKAIEKGINIA 233

Query: 457 NKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           + ++ +L+VAGKGHE   I+     + S D ++IRE
Sbjct: 234 HDENMILLVAGKGHERFQIIEGQSLEFS-DVEVIRE 268


>gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 529

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 235/492 (47%), Gaps = 44/492 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+  S   +  W+FVAI G  + G  F   A   GA A++  +A + +  S  +  
Sbjct: 47  RIAGVTVSSDDCEPQWLFVAIPGLSQHGIRFARAAKEAGAVAVLTDAAGASRAVSEGL-- 104

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVA-------SFVQQICQ 138
             P++VVD+ R  ++  A+ +YG HP      LAVTGT+GK++ +       + V     
Sbjct: 105 GLPVVVVDDPRSHVAALAAAVYG-HPARDLVTLAVTGTNGKTTTSYLMRAALAAVHPRAA 163

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G    ++GP S      +  R T  SP+ + + L+     G     +E S+H L  HR
Sbjct: 164 LCGTVETRVGPVSF-----EAERTTAESPV-VQRFLALARECGEGAAVIETSAHALSLHR 217

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +DG+     +FTNL  DH+DY+   + YFNAK  LF     K   A++  DD + + +  
Sbjct: 218 VDGVVFDVAAFTNLQHDHLDYYGDMEGYFNAKALLFTPEHAKR--AVVCVDDEWGRRL-- 273

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------EGKDFDFLFPLPGEFQV 312
            A +A   V +V          +V A H    +  +V      +G   +   P+ GE  V
Sbjct: 274 -AASAPIPVTTVSALTDAPAHWRVRAAHPDPSIGRTVFTLVDPDGTGHEVRMPILGEVNV 332

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSL 369
            N  VA    +A G+     L  LE    +PGR E V  N   G    + VDYAHT  +L
Sbjct: 333 QNTAVALVSAVAAGVPLDGALRALEAAPQIPGRMEKV--NPVPGNQPLVVVDYAHTPEAL 390

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L++ R +T+GR+ +VFG  GDRD  KR  +  IA   AD+  VTD+NPR+EDP+ IR
Sbjct: 391 EWTLRSTRELTAGRLHIVFGTDGDRDASKREHLAGIAAAGADVLWVTDENPRTEDPQSIR 450

Query: 430 AEIIHGI----PGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             ++ GI    P   +       R +A+R AI      D +++ GKG E    V  G K 
Sbjct: 451 DYLLRGIASQRPSMADVTEVVTCRRDAVRRAILAAQPGDTVIITGKGAEWYQEV-EGIKH 509

Query: 482 MSVDCDIIREIL 493
              D  + RE+L
Sbjct: 510 RYNDVPVAREVL 521


>gi|206561804|ref|YP_002232569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia J2315]
 gi|198037846|emb|CAR53790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Burkholderia cenocepacia J2315]
          Length = 512

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 153/484 (31%), Positives = 232/484 (47%), Gaps = 47/484 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +FVA   +  D   F+         A V+     L D  A      P
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRAFM-ADAVARGAAAVLYQPDGLTDAPAV-----P 83

Query: 92  I-LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + L V    +     AS  YG   +++LAV  TGT+GK+S   ++      + L++    
Sbjct: 84  VALAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIA-----TALTALHQ- 137

Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           P + I +              TTP    L ++L+ L + G   V++E SSH L Q R++G
Sbjct: 138 PCAVIGTLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRAAGAQAVAMEVSSHALHQGRVNG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                  FTNL +DH+DYH T  AY  AK +LF     +   A++  DDA  + ++++  
Sbjct: 198 TAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVLNRDDAAGRRLLEKLA 255

Query: 262 NAGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               RV ++ Y           + +    V A        +     D D      G F V
Sbjct: 256 G---RVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNV 312

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370
            N L   G  +A  +     L  +E+L  V GR + +G   +     + +DYAHT ++L+
Sbjct: 313 SNLLAVLGSLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALD 372

Query: 371 MILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L  +R I +   GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ 
Sbjct: 373 KTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQH 432

Query: 428 IRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  ++I G+    E+  RIE    AI  A+    ++DV+V+AGKGHE    +  G+K+  
Sbjct: 433 IIDQVIAGMTA-PERARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTF 490

Query: 484 VDCD 487
            D D
Sbjct: 491 SDQD 494


>gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 488

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 155/478 (32%), Positives = 242/478 (50%), Gaps = 26/478 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + KI  + SDSR+++   IF  I G   DGH ++  A+ QGA+ IV S   +L  +   I
Sbjct: 13  DMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSK--NLNYYHDKI 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
                   V+NT   L+   S L+   P N   I+ VTG+SGK+ VAS ++    +   S
Sbjct: 71  ----IYFRVENTLVELNR-VSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKY-CS 124

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  IG  S   +   ++   TTP  +YL + L  ++  GV  V++EASSHGL   R+DGI
Sbjct: 125 SGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGI 184

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G +H+D+H T++ Y  AK +LFE + P    AI+ +DD      M   +N
Sbjct: 185 NFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPT-GWAILNSDDL---NFMTLKNN 240

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              R+L+ G + +   + K   +H +  +  IS +G  F    P+   F +YN L   G+
Sbjct: 241 TQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGV 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            IA+G D  +V++ +E +  + GR E + T  +   I +DY    ++ E I + +  +  
Sbjct: 301 LIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQFAVI-IDYCQHISNYEAIFEYVDGVRQ 359

Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHG 435
             GRII V G  G R+   R  +G++A    D  I+T  + R ED     + I+ EI+  
Sbjct: 360 GHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICKTIQKEIVDI 419

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               IE  +R  AI  AIE+  K D++++ GKGHE    +  G+     D  I++E L
Sbjct: 420 NSVIIE--SRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQIVKEAL 475


>gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
 gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
          Length = 452

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 219/439 (49%), Gaps = 37/439 (8%)

Query: 13  ELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL  QL +  P Q  E  +  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A+
Sbjct: 19  ELSGQLGVAAPEQTAE--VTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVAV 76

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSV 129
           +   A + +  +A +    P LVVD+ R  +   A+ +YG    ++L   +TGTSGK++ 
Sbjct: 77  LTDPAGAERVAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTT 132

Query: 130 ASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184
           A  V+      GL +    G   T+     D R+    TTP    L    + +  +G   
Sbjct: 133 AYLVE-----GGLRTVHSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTDA 187

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
           V++E SSH L   R+DG     G FTNL  +H+++H   + YF AK +LF    P+    
Sbjct: 188 VAMEVSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSDMEDYFRAKAQLF---TPERGRL 244

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKD 299
            ++ ADD Y + + K    AG  V++   +G     +          +     +  +G+ 
Sbjct: 245 GVVNADDEYGRRLAK---EAGVPVVTYSAEGHPDADWRAEDVEVGTMDSTFTVVGPKGER 301

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PLPG F V N L A       G+D     + +  +  VPGR E V      G+ Y
Sbjct: 302 IAARSPLPGPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDA----GQPY 357

Query: 360 ---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              VDYAH ++++E +L+ +R +T GR+ VV GCGGDRD+ KR  MG  A  LAD A++T
Sbjct: 358 LAVVDYAHKTDAVESVLRALRKVTEGRVHVVLGCGGDRDKTKRAPMGAAAARLADTAVLT 417

Query: 417 DDNPRSEDPEKIRAEIIHG 435
            DNPRSEDP  I A ++HG
Sbjct: 418 SDNPRSEDPLSILATMLHG 436


>gi|254199058|ref|ZP_04905473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
 gi|169656888|gb|EDS88285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
          Length = 514

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
 gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
          Length = 493

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 153/491 (31%), Positives = 235/491 (47%), Gaps = 44/491 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   FP              E+   +++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWFPYA-----------GEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLY---GKHPEN 116
            +A+AQGA A++V +  S+++    I +   + +      K +S  A+  Y         
Sbjct: 51  DKALAQGAIAVLVHTD-SIEEQGKVIATEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMG 109

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIY 169
           I+ +TGT+GK+S +    Q+C +  L +   G  + + +          D+  TT   I 
Sbjct: 110 IVGITGTNGKTSTS----QLCAQ--LVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAIT 163

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L + L   + +GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  A
Sbjct: 164 LMRQLYEFADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAA 223

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  LF          ++  DD      +    N   ++     +    H +      N Q
Sbjct: 224 KQMLFR--FDALRHGLVNLDDPVGAAWLSELANVPAKMWGFSIEA---HTEAAFYTKNAQ 278

Query: 290 QVTISVEGK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                V+ K      + D   PL G F + N L A       G+D   +   +  L  V 
Sbjct: 279 FNDQGVQAKLVWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVA 338

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E   T +    + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG
Sbjct: 339 GRMERF-TTADNITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMG 397

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQD 460
           + A   AD  +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      D
Sbjct: 398 QAAEQCADRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGD 457

Query: 461 VLVVAGKGHET 471
           V+++AGKGHET
Sbjct: 458 VILLAGKGHET 468


>gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actG]
          Length = 521

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 157/503 (31%), Positives = 248/503 (49%), Gaps = 37/503 (7%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +L   L + P   R      +  ++ DSR ++ G I+ A+ G +  G  F  QA + GA 
Sbjct: 19  DLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAV 78

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127
           A +   A + +  +A +    P+LVV + R  +   A+R+YG   +++L   +TGTSGK+
Sbjct: 79  AALTDPAGAERVLAAGL----PVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKT 134

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           + A  ++   + +G S+  IG   T+ +   D RL    TTP    L    + +  +GV 
Sbjct: 135 TTAYLMEGGLRAAGHSTGLIG---TVETRIGDERLKSERTTPEATDLQALFAVMRERGVD 191

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +LF     +   
Sbjct: 192 AVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRG- 250

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302
            ++  DD Y + ++  A        + G+       + V         T+   +G  +  
Sbjct: 251 -VVNYDDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPA 309

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--- 359
             PLPG F V N L A       G D  +  E +  +  VPGR E V      G+ Y   
Sbjct: 310 RAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDE----GQPYLAV 365

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T DN
Sbjct: 366 VDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDN 425

Query: 420 PRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSEDP  I A ++ G   +P   E+G+ +       AI   +      D +++AGKGHE
Sbjct: 426 PRSEDPLAILAAMLAGAAEVP-VHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 484

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V NG  +   D ++++E +
Sbjct: 485 QGQDV-NGVVRPFDDREVLKEAI 506


>gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
 gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
          Length = 498

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 189/383 (49%), Gaps = 40/383 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKA 173
            I+AVTGT+GK++V  ++ Q   + G  +  IG               LTTP  + +   
Sbjct: 109 TIIAVTGTNGKTTVTRWLAQSLNQLGKKAAVIGTLGYGEPDQLKAHTGLTTPDVVGVHHL 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  L   G   V +EASS GL+Q RL  + +    FTNL +DH+DYH    AY  +KM L
Sbjct: 169 LHELRQAGFDTVCIEASSIGLEQRRLACVSIDVALFTNLSQDHLDYHGDMAAYGRSKMIL 228

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN-------------AGCRVLSVGYQGKFIHLK 280
                P    A++ ADD++  E +    +             A C+++SV +Q K     
Sbjct: 229 AS--WPTLRLAVVNADDSFGVEFLAHVQHRNIDCSAVGHVSTADCQIVSVAHQEK----- 281

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                   Q++ + + G       P+ GEF   N  +     + +G D++ V   L  + 
Sbjct: 282 -------GQRIELKINGAITQIDTPIIGEFNADNMALVFATLVRLGYDASEVKRALAGVT 334

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQG 397
             PGR + +        + VDYAHT ++LE  L  +R   +   G++ VVFGCGGDRD+ 
Sbjct: 335 PAPGRMQHIEGEPA---VVVDYAHTPDALEKTLLALRPFANKRMGKLWVVFGCGGDRDRS 391

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-----AIRTA 452
           KRP+MG  A+  AD  ++T DNPRSE PE I  EII GI   ++    +E     AI  A
Sbjct: 392 KRPLMGAAAVAKADFVVLTSDNPRSEKPETILQEIIAGIDAPLQNNIHVEVDRPVAIEFA 451

Query: 453 IEMLNKQDVLVVAGKGHETVHIV 475
           +   N QDV+++AGKGHE+   +
Sbjct: 452 VRKANAQDVVLLAGKGHESTQTI 474


>gi|121606311|ref|YP_983640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
 gi|120595280|gb|ABM38719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 496

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 223/463 (48%), Gaps = 35/463 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV----SSAYSLQDF 82
           ER I  +S+DSR    G  F+A  G   DG  ++  A+A GA A +V    + AY   D 
Sbjct: 15  ERVIGTLSADSRKAGQGDGFIAWPGAATDGRNYVNAALAAGASACLVEHAGAQAYGFNDD 74

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
                    +      +      A+  +G   E   + A+TGT+GK+S A ++ Q   R 
Sbjct: 75  R--------VATYAGLKAATGPMAAAYFGAPSEQLQVTAITGTNGKTSTAWWLAQALGRL 126

Query: 141 G-----LSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           G     + +  IG P + ++     N LTTP P+ L + L   + +G    ++EASS GL
Sbjct: 127 GRKCGIVGTLGIGEPGAMVA-----NGLTTPDPVLLQQQLRRFADEGFAACALEASSIGL 181

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           ++ RLDG ++    FTN  +DH+DYH +   Y+ AK  LF    P    AII  DD+   
Sbjct: 182 EEGRLDGTRIQIAVFTNFTQDHLDYHASMPDYWRAKQMLFN--WPGLRAAIINVDDSRGL 239

Query: 255 EVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           E+          V ++   G   +  + +C   +     +   G+      P+ G + V 
Sbjct: 240 ELSAALAGTSLDVWTLSCAGPARLQAQAICQGAHDLSFDVVEGGERHRISTPMVGLYNVS 299

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L       A+ +  A  +     L  VPGR E +        + +DYAHT ++LE +L
Sbjct: 300 NLLGVMASLRAMDVPLADAVAACADLLPVPGRTETLAVPGL-PLVVIDYAHTPDALEKVL 358

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  +     GR+  VFGCGGDRD GKRP+M   A   AD  ++T DNPRSEDP  I  
Sbjct: 359 TALNPVAQGRGGRLWCVFGCGGDRDAGKRPLMAAAAEKNADQLVITSDNPRSEDPVTIIG 418

Query: 431 EIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +++ G+  P     + +R  AI  A+++   QDV+++AGKGHE
Sbjct: 419 QMLKGLSRPQVAHVQEDRRAAIAHALQLAQPQDVVLLAGKGHE 461


>gi|134280166|ref|ZP_01766877.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
 gi|134248173|gb|EBA48256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
          Length = 514

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|326333497|ref|ZP_08199738.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325948697|gb|EGD40796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 512

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 212/418 (50%), Gaps = 24/418 (5%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           P+L+V+  RK L   ++R+YG +P     ++ VTGT GK++     +     SG  +  I
Sbjct: 101 PVLLVEQPRKVLGALSARVYG-NPSGRLRLIGVTGTQGKTTTTRLAESALLDSGHRAGVI 159

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T I        LTTP    L    + +  +G    ++E SSH L   R+DG+    
Sbjct: 160 GTVGTRIGGRDVKTPLTTPEAPDLHGLFARMVEEGTEACAMEVSSHALVMGRVDGVVFDV 219

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGC 265
             F NLGRDH+D+H+T + Y+ AK  LF    P+ +   I+  DD + + +   A  A  
Sbjct: 220 AVFLNLGRDHLDFHETVEDYYAAKADLF---TPERAELGIVNIDDEHGRRL---AAEATI 273

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVA-AGL 321
            +L+          +           + +V G D   F    PL G++ V N L A A +
Sbjct: 274 PILTYALHDDTADWRATDIELRPDGSSFTVHGPDGLSFPAASPLAGDYNVSNTLAALASI 333

Query: 322 CIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             A G ++ +  V   L K   VPGR E +    +   + VDYAH  +++E  L  +R +
Sbjct: 334 HHAYGDETVVRDVATALAKGSGVPGRLERI-DEGQPFTVVVDYAHKPDAVEAALGTLRPL 392

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
           T  R+IVV G GGDRD GKRPIMG+I+  LAD  IVTDDNPR+EDP  IR +++ G  G 
Sbjct: 393 TESRLIVVIGAGGDRDTGKRPIMGEISARLADHVIVTDDNPRTEDPASIRRQVLAGTTGG 452

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                E G+R  AI  AI +    D++VVAGKGHET   + NG      D  ++RE L
Sbjct: 453 SASVEEIGDRRAAIERAIGLAQPGDIVVVAGKGHETGQEI-NGVTHPFDDRQVVREAL 509


>gi|160880627|ref|YP_001559595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
 gi|160429293|gb|ABX42856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
          Length = 493

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 157/486 (32%), Positives = 243/486 (50%), Gaps = 40/486 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R+I+ +  DSR ++   IFV I G   DGH F+ + IA+G+  IV     S+ D     
Sbjct: 20  DREISTLCYDSRKVEKDSIFVCITGVVSDGHSFVNEVIAKGSTVIVAEKEVSVPD----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
                +L+V NTR+ L+ + S  Y  +P   L   G +G     +    V  I   +G+ 
Sbjct: 75  --GVTLLLVSNTREALA-YLSAAYFDYPAEKLKTIGITGTKGKTTTTYMVHSILSEAGIK 131

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  IG   TI +   D  +    TTP    + +  + +   G T V +E SS GL  HR+
Sbjct: 132 TGLIG---TIETMIGDTVIPANNTTPESYLVQQYFAKMVEDGCTCVVMEVSSQGLMLHRV 188

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            G     G FTN+  DHI    H + + Y   K  LF++        I   DD + ++V+
Sbjct: 189 SGFTFDIGVFTNMEPDHIGPGEHGSFEEYMACKGLLFKQC----KVGIANVDDKHMEQVL 244

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQ---QVTISVEG-KDFDFLFPLPGEFQV 312
              H   C + + G   K   L+ V   +H+K     V   V+G  DF     +PG+F V
Sbjct: 245 S-GHT--CTLETYGLSEK-ADLRAVDIDLHSKLGNLMVLYKVKGLCDFPVQVNIPGKFTV 300

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN+L A  +C    I +  + E L K+ V  GR E V   S+   + +DYAH + SL+ +
Sbjct: 301 YNSLTAIAICRHFNISTERIKEVLTKVKV-KGRVEPVEV-SKKFTMMIDYAHNAMSLQSV 358

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +R     R++ +FGCGG+R + +R  MG+I+ +LAD  IVT DNPR E+P+ I  +I
Sbjct: 359 LSTLREYEPKRLVCLFGCGGNRSKDRRFEMGEISSNLADYTIVTSDNPRFEEPQDILNDI 418

Query: 433 IHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           + G+      +I   +R EAIR +I    + D++++AGKGHE    +  G K    D ++
Sbjct: 419 VVGVKRGKGDYIAILDRKEAIRHSILTAKEGDIILIAGKGHENYQEI-RGVKHHMDDREL 477

Query: 489 IREILG 494
           I+EI+ 
Sbjct: 478 IQEIVA 483


>gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276]
 gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276s]
 gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9768]
 gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11222]
 gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11074]
 gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9301]
 gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-EC]
 gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-LC]
          Length = 483

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 247/467 (52%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR +  G IF+A  G   +G+ +  QA+A GA A V+SS Y+   F + ++  
Sbjct: 23  VRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAIA-VLSSLYN--PFLSVVQ-- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++ ++     +  A+R Y       +++ +TGT+GK++V+  V+++ +RSG  +  I
Sbjct: 78  ---IIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSCLVRELMERSGRRTGLI 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI     +NR+    TTP  I L K  + +  Q ++   +E SS G+   R+   +
Sbjct: 135 G---TIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGRVRETE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +AG  TN+  DH+D+H + + Y  AK + F   LP++  A++  D  Y+   +      
Sbjct: 192 FLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS-LPEKGIAVVNLDCEYAPSFLN----- 245

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LFP----LPGEFQVYN 314
           G +  +V Y    IH +   A +   ++ +   G  +D      +FP    L GE  VYN
Sbjct: 246 GSQARAVSYA---IHQE---ADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGEHNVYN 299

Query: 315 ALVAAGLCIA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            L  A L +    +G D A ++  +  L    GR + +        +Y+DYAHT ++L+ 
Sbjct: 300 VL--ASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLGPFP--VYIDYAHTPDALDN 355

Query: 372 ILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + + +  +    GR+I+VFGCGGDRD+ KRP+M K++ +    + VT DNPR+EDP++I 
Sbjct: 356 VCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVS-EHYGFSFVTSDNPRTEDPDQII 414

Query: 430 AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE   I
Sbjct: 415 ADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGYQI 461


>gi|221202509|ref|ZP_03575539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
 gi|221208169|ref|ZP_03581174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221172072|gb|EEE04514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221177604|gb|EEE10021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
          Length = 513

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 157/485 (32%), Positives = 244/485 (50%), Gaps = 48/485 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  +  +AT   N P
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVL----YQPEGLAAT--PNAP 83

Query: 92  I-LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + L V    +     AS  YG   + +LA  VTGT+GK+S + ++      + L++    
Sbjct: 84  VALAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCSQWIA-----AALTALHQ- 137

Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           P + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G
Sbjct: 138 PCAIIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                  FTNL +DH+DYH+T +AY  AK +LF     +   A++  DDA  + ++++  
Sbjct: 198 TAFDIAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLA 255

Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQ 311
               RV ++ Y     Q      +++ A+  +   T     +     D D      G F 
Sbjct: 256 G---RVRTIAYGIGDTQQALDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFN 312

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369
           V N L   G  +A  +     L  + +L  V GR + +G   +     + +DYAHT ++L
Sbjct: 313 VSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDAL 372

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           E  L  +R I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+
Sbjct: 373 EKTLDALRPIAVARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQ 432

Query: 427 KIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I  +I+ G+    ++  RIE    AI  A+    ++DV+V+AGKGHE    +  G+K+ 
Sbjct: 433 AIIDQIVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRA 490

Query: 483 SVDCD 487
             D D
Sbjct: 491 FSDQD 495


>gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 494

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 242/477 (50%), Gaps = 55/477 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  + +DSR ++ G +F+ + G+  DGH F  QA  +GA A+VV     +         
Sbjct: 22  EITGIETDSRQVKPGDLFICLPGHTVDGHEFAAQAADKGAAALVVERKLEV--------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P ++V ++R  ++  A+  Y +      ++ VTGT+GK++    ++ I    GL +  
Sbjct: 73  DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTTTYLIETIMNDFGLKTGL 132

Query: 147 IGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG T  +    Q   +  TTP  + L + L+ +++ G     +E SSH L+Q R+ G   
Sbjct: 133 IG-TIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVMEVSSHALEQGRVKGTDF 191

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESP---AIIYADDAYSKEVM 257
               FTNL +DH+DYH T + Y  AK   F  L       ES    A++ ADD  S    
Sbjct: 192 RTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDESARKYAVLNADDDASAYFA 251

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPG 308
           K+       V++ G  G+   ++          ++I+ +G  F         D    + G
Sbjct: 252 KQT---AAEVITYGL-GEDADVRA-------SNISITAQGTSFHVDTFRGSADISIRMVG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F VYNA+ A    +  G+    +   LE +  V GR E V    +   + VDYAHT + 
Sbjct: 301 KFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVV-DEGQPYAVIVDYAHTPDG 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +     GR+I VFGCGGDRD+ KRPIMGKIA   +D+ +VT DNPR+EDPE I
Sbjct: 360 LENVLRTVNEFAEGRVITVFGCGGDRDRTKRPIMGKIAAKYSDVVLVTSDNPRTEDPELI 419

Query: 429 RAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             +I  G+   +E G          +R +AI  AIEM +  DV+++AGKGHET  ++
Sbjct: 420 LKDIEAGL---VEDGVAAESYKLIVDRRKAIEKAIEMASPGDVVLIAGKGHETYQLI 473


>gi|256379770|ref|YP_003103430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
 gi|255924073|gb|ACU39584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
          Length = 527

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 229/457 (50%), Gaps = 28/457 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88
           +  V+  ++H+  G +F A+ G +  G  F  +A+ +GA A+       L D     R  
Sbjct: 58  VTGVTLRAQHVLPGDLFAALPGARAHGADFAAEAVRRGAVAV-------LTDEDGASRPE 110

Query: 89  --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRS-GLS 143
             + P+LV  + R  L   ++R+YG+ P   +A+ G +G S   +  ++ + C R+ G  
Sbjct: 111 LRDVPVLVHRDPRAALGALSARVYGE-PAQRVALWGVTGTSGKTTTSYMIESCLRAEGRV 169

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G   T I+    D+  TTP    L   L+ +  +GV    +E SSH L   R+ G 
Sbjct: 170 TGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEVSSHALRLGRVGGA 229

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G+FTNL +DH+D+H   + YF AK  LF+    +E   ++  D  + + ++K    
Sbjct: 230 GFAVGAFTNLSQDHLDFHPDMEDYFQAKAELFDGRARRE---VVCVDGEWGRRLVKPGTV 286

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  VG         +V A   +       +G +      LPG+F V NAL+A G  
Sbjct: 287 TVSATAPVGGATWTASGVRVSATGEQTFTAHGPDGLELAVALRLPGDFNVANALLAIGCL 346

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A G+ +  ++  L ++ V PGR + V        + VDY+H   ++ + L  +R   +G
Sbjct: 347 HASGVGAEAIVRGLAEVQV-PGRMQRVDVGQDFTAV-VDYSHKPAAVVLALDAVRARATG 404

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IP-- 437
           R+I V GCGGDRD  KRP+MG  A   +++ +VTDDNPRSEDP  IRA ++ G   +P  
Sbjct: 405 RVITVLGCGGDRDTAKRPLMGAEAARRSEVLVVTDDNPRSEDPAAIRAAVLAGALEVPEA 464

Query: 438 ---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                +E G+R  AI  A+ +    DV+VVAGKGHET
Sbjct: 465 ERGEVVEIGDRGAAIAHAVSLAVAGDVVVVAGKGHET 501


>gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
 gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
          Length = 488

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 155/478 (32%), Positives = 241/478 (50%), Gaps = 26/478 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + KI  + SDSR+++   IF  I G   DGH ++  A+ QGA+ IV S    L  +   I
Sbjct: 13  DMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSK--DLNYYHDKI 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
                   V+NT   L+   S L+   P N   I+ VTG+SGK+ VAS ++    +   S
Sbjct: 71  ----IYFRVENTLVELNR-VSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKY-CS 124

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  IG  S   +   ++   TTP  +YL + L  ++  GV  V++EASSHGL   R+DGI
Sbjct: 125 SGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGI 184

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G +H+D+H T++ Y  AK +LFE + P    AI+ +DD      M   +N
Sbjct: 185 NFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPT-GWAILNSDDL---NFMTLKNN 240

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              R+L+ G + +   + K   +H +  +  IS +G  F    P+   F +YN L   G+
Sbjct: 241 TQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGV 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            IA+G D  +V++ +E +  + GR E + T  +   I +DY    ++ E I + +  +  
Sbjct: 301 LIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQFAVI-IDYCQHISNYEAIFEYVDGVRQ 359

Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHG 435
             GRII V G  G R+   R  +G++A    D  I+T  + R ED     + I+ EI+  
Sbjct: 360 GHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICKTIQKEIVDI 419

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               IE  +R  AI  AIE+  K D++++ GKGHE    +  G+     D  I++E L
Sbjct: 420 NSVIIE--SRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQIVKEAL 475


>gi|167618576|ref|ZP_02387207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis Bt4]
          Length = 514

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 235/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +FVA   +  D   FI  A+A+GA A++    Y  + F A       
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T  AY  AK +LF         A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLHCAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLP---------GE 309
              RV ++ Y    I      A  +++ V  +V     G  F    P           G 
Sbjct: 255 LAGRVRTIAYG---IDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGT 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  +E+L  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L+ +R I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+
Sbjct: 372 ALEKTLEALRPIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEE 431

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+          +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|167825935|ref|ZP_02457406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 9]
 gi|226199593|ref|ZP_03795149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|225928339|gb|EEH24370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 514

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 235/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LTGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|111221625|ref|YP_712419.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
 gi|111149157|emb|CAJ60840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
          Length = 476

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 239/460 (51%), Gaps = 30/460 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-DFSATIRS 88
           +  V+ DSR +  G ++ A+ G    G  F   AIA+GA A++  +  + +   +    +
Sbjct: 2   VRGVTHDSRRVAPGDLYAALPGAHVHGADFAAAAIARGAVAVLTDAEGARRIAAAGGPAA 61

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+LV  + R+ L+  A+R++G     +  L VTGT+GK++ A  +    + +G ++  
Sbjct: 62  ALPVLVSADPRRDLAPVAARIHGDPSAGLRLLGVTGTNGKTTTAFLLDAGLRAAGHTTGL 121

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           IG   T+ +    +RL    TTP    L   L+ +  +GV   ++E SSH L QHR D +
Sbjct: 122 IG---TVETRIAGDRLASAHTTPEASDLQALLATMVERGVDAATMEVSSHALAQHRADAL 178

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261
                 FTNL +DH+D+H T   YF AK  LF   +P + + A+I   D + + +  R  
Sbjct: 179 HFAGALFTNLSQDHLDFHPTMADYFEAKASLF---VPGRAAAAVIGVGDEWGRRLAARRP 235

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +A     +V     +            + +     G+  +   PLPG F + NAL A  L
Sbjct: 236 DA--VTFAVDGPADWTARDVTAGPTGSELLAAGPGGERVELSVPLPGVFNIANALGALAL 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRT 378
            +A+G+D A     +  L  VPGR E V      G+ +   VD+AHT +++  +L  +R 
Sbjct: 294 LVAVGVDPAAAAAGIGALPGVPGRMERVDA----GQPFLALVDFAHTPDAVTTLLATVRP 349

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +  GRIIVV GCGGDRD+GKRP+MG  A  LAD+AI+T+DNPRSEDP  I A ++ G+P 
Sbjct: 350 LVKGRIIVVLGCGGDRDRGKRPLMGAAAATLADLAILTNDNPRSEDPADILAAMLAGVPT 409

Query: 439 FIEKGNR--IEAIR-----TAIEMLNKQDVLVVAGKGHET 471
                 R  +E  R      A+     QD +VVAGKGHE+
Sbjct: 410 AARAAGRVLVEPDRAAAIAAAVAAAGPQDAVVVAGKGHES 449


>gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
 gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 497

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 239/477 (50%), Gaps = 41/477 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++  +  +S   + G +F+ + G + +G  F P A+A GA A VVS     ++  A + 
Sbjct: 23  QEVKSLRMNSWECEPGSLFIGMPGTRVEGGNFWPSALAAGAIAAVVSPQAKPREGEACV- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                +VV +  +     A+  Y  +P    ++L VTGT+GK++    V+ +  R G  +
Sbjct: 82  -----IVVPDIERACGRLAAAFY-NYPSQHLSLLGVTGTNGKTTTTHLVEHLLNRVGYPT 135

Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   S      +    TTP  + L + L+     G     +E SSH L Q R+ G +
Sbjct: 136 ALLGTLYSRWPGHCEVASHTTPFAVTLQEQLAAAVDAGCRFGVMEVSSHALAQDRVWGCQ 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---- 259
               +FTNL +DH+DYH+  + YF AK +LF     K   AI+  DD + + + ++    
Sbjct: 196 FEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTADYLKGR-AILNGDDPFGQRLAQQLPRD 254

Query: 260 -------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                  + +A  R  ++ Y+   +      A+H        +     D   PL G+F V
Sbjct: 255 RYWTYGLSKDADFRAENLNYRSNGV----TGAVHT------PLGSGTLDS--PLVGQFNV 302

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEM 371
            N L A  +  A+G+    +L  L     VPGR E V  +      + VDYAHT +SLE 
Sbjct: 303 ANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDITVVVDYAHTPDSLEN 362

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+  R    G++I VFGCGGDRD+ KRP MG IA  LAD  +VT DNPR+E+P++I  +
Sbjct: 363 LLRAARPFIPGKLICVFGCGGDRDRSKRPQMGAIAARLADQVVVTSDNPRTENPQRILDD 422

Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I+ GIP     I +G+R +AI  AI      D +++AGKGHE   I+  G +K+  D
Sbjct: 423 ILAGIPPETAMIVEGDRRQAILQAILTAAPGDGVIIAGKGHEDYQIL--GTEKVHFD 477


>gi|161526010|ref|YP_001581022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349273|ref|YP_001944901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|160343439|gb|ABX16525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia multivorans
           ATCC 17616]
 gi|189333295|dbj|BAG42365.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
          Length = 513

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 159/485 (32%), Positives = 243/485 (50%), Gaps = 48/485 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  +  +AT   N P
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVL----YQPEGLAAT--PNAP 83

Query: 92  I-LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + L V    +     AS  YG   + +LA  VTGT+GK+S   ++      + L++    
Sbjct: 84  VALAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIA-----AALTALHQ- 137

Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           P + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G
Sbjct: 138 PCAIIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                  FTNL +DH+DYH+T +AY  AK +LF     +   A++  DDA  + ++++  
Sbjct: 198 TAFDIAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLA 255

Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQ 311
               RV ++ Y     Q      +++ AI  +   T     +     D D      G F 
Sbjct: 256 G---RVRTIAYGIGDAQQAPDADRELVAIDVRATATGTAFRLRSSWGDADVEVGTLGTFN 312

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369
           V N L   G  +A  +     L  + +L  V GR + +G   +     + +DYAHT ++L
Sbjct: 313 VSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDAL 372

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           E  L  +R I     GR+I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+
Sbjct: 373 EKTLDALRPIAVARGGRLICMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQ 432

Query: 427 KIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I  +I+ G+    ++  RIE    AI  A+    ++DV+V+AGKGHE    +  G+K+ 
Sbjct: 433 AIIDQIVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRA 490

Query: 483 SVDCD 487
             D D
Sbjct: 491 FSDQD 495


>gi|254180541|ref|ZP_04887139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
 gi|184211080|gb|EDU08123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
          Length = 514

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + +V  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   AI+  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAIVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
 gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
          Length = 521

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 157/503 (31%), Positives = 248/503 (49%), Gaps = 37/503 (7%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +L   L + P   R      +  ++ DSR ++ G I+ A+ G +  G  F  QA + GA 
Sbjct: 19  DLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAV 78

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127
           A +   A + +  +A +    P+LVV + R  +   A+R+YG   +++L   +TGTSGK+
Sbjct: 79  AALTDPAGAERVLAAGL----PVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKT 134

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           + A  ++   + +G S+  IG   T+ +   D RL    TTP    L    + +  +GV 
Sbjct: 135 TTAYLMEGGLRAAGHSTGLIG---TVETRIGDERLKSERTTPEATDLQALFAVMRERGVD 191

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +LF     +   
Sbjct: 192 AVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRG- 250

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302
            ++  DD Y + ++  A        + G+       + V         T+   +G  +  
Sbjct: 251 -VVNHDDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVEIGPTDSTFTVVGPDGSRYPA 309

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--- 359
             PLPG F V N L A       G D  +  E +  +  VPGR E V      G+ Y   
Sbjct: 310 RAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDE----GQPYLAV 365

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T DN
Sbjct: 366 VDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDN 425

Query: 420 PRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSEDP  I A ++ G   +P   E+G+ +       AI   +      D +++AGKGHE
Sbjct: 426 PRSEDPLAILAAMLAGAAEVP-VHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 484

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V NG  +   D ++++E +
Sbjct: 485 QGQDV-NGVVRPFDDREVLKEAI 506


>gi|315504601|ref|YP_004083488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
 gi|315411220|gb|ADU09337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
          Length = 507

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 199/401 (49%), Gaps = 33/401 (8%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P+LVV + R  L   A+ +YG       ++ VTGT+GK+S +  V+   + +G  + 
Sbjct: 89  TGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRAAGHVTG 148

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T +     D+  TTP    L   L+     GV  V +E SSH L   R+ G++ 
Sbjct: 149 LIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGRVGGVRF 208

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKEVMKR 259
             G +TN G DH+D+H  +  YF AK +LF+     E+L  + PA            ++ 
Sbjct: 209 DVGGYTNFGSDHLDFHADEADYFAAKAKLFDGRCRVEVLNHDDPA------------LRP 256

Query: 260 AHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALV 317
            H  G    S  G          +      Q+ T+   +G        LPG   V NAL+
Sbjct: 257 LHKPGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNSLEMILKN 375
           A  L +A+G+D       +     VPGR E V  ++  RG    VDYAH +N++E +L  
Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELVSGDAPVRG---VVDYAHKANAIEAVLIA 373

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R +T GR+I V G GGDRD+GKRP+MG +A   AD+ +VTDDNPR+EDP  IRAE++ G
Sbjct: 374 LRDLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAG 433

Query: 436 IPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                     IE   R  AI  A+ M    DV+ V GKG E
Sbjct: 434 AYAAATPARVIEVPGRRAAIEEAVRMAEPGDVVAVLGKGQE 474


>gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 519

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 141/461 (30%), Positives = 226/461 (49%), Gaps = 36/461 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR ++ G IF+A  G   DG + + +A+A+GA A +V      +   A       +
Sbjct: 35  LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAACLVER----EGVEAFRFGAEGV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR---SGLSSFQI 147
             + + +    L A+  +G   +  +++AVTGT+GK+S   ++     +   SGL++   
Sbjct: 91  AALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTSTTWWLADALNQLAGSGLAAH-- 148

Query: 148 GPTSTISSFA-------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G    I +         +   LTTP P+ L +A +   + G+   ++EASS GL +HRL 
Sbjct: 149 GGCGLIGTLGVGVPPELECTGLTTPDPVRLQQAFAGFVANGLGACAIEASSIGLAEHRLA 208

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G++L    FTN  +DH+DYH    AY+ AK  LF+   P    A++  DD    E+    
Sbjct: 209 GMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFD--WPGLQAAVVNIDDPRGGELADTL 266

Query: 261 HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + +    G   +  + +       + T++   +       + G + ++N L   
Sbjct: 267 AQRPIDLWTTSITGPARLQARDITWGEGGLRFTVAEGVQAHVLQTRVIGHYNIHNLLAVV 326

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A+GI     L    +L  VPGR E +    +   + VDYAHT ++LE  L+ +R +
Sbjct: 327 ASLRALGIPLEHALWACAQLAPVPGRMELIHEPDQP-LVAVDYAHTPDALEQALQALRPV 385

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+  VFGCGG+RD+ KRP+MG+IA   AD  IVT DNPR+E P  I  EI+ G 
Sbjct: 386 AEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADAVIVTSDNPRNEAPGAILHEILLG- 444

Query: 437 PGFIEKGNRIEA-------IRTAIEMLNKQDVLVVAGKGHE 470
                 G  ++A       I  AI   + +DV+++AGKGHE
Sbjct: 445 ---TVAGTTVQAEPERDAAIARAIAEADGRDVVLIAGKGHE 482


>gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 494

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 143/469 (30%), Positives = 231/469 (49%), Gaps = 43/469 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R + ++++DSR  ++G IFVA  G   D H F    I QG + IVV S   ++      
Sbjct: 20  DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVE------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140
             +   ++V  T +  SL A  L+    H      VTGT+GK+S+A+ +  I ++     
Sbjct: 74  -GDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI    T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINEQKTKGAN------TTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DDA+S+
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSE 246

Query: 255 EVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPG 308
            +   A      + + G     Q K IH+ +       Q VT  ++    +++   P  G
Sbjct: 247 YL---ASVTPYEIFTYGIDNDAQFKAIHINESL-----QGVTFELDTPFGNYNVQSPYVG 298

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F + N + A     + GI    ++E ++ L  V GR E +  N     I +DYAHT++ 
Sbjct: 299 KFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNLPIDLI-IDYAHTADG 357

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +  ++  ++     ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ +
Sbjct: 358 MNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVAC-RADYVIFTPDNPANDDPKML 416

Query: 429 RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +E+  G     ++E  +R E IR AIE+    D +V+A KG E   I+
Sbjct: 417 TSELAKGATHDNYVEFEDRAEGIRHAIEVAEPGDTVVLASKGREPYQIM 465


>gi|53726027|ref|YP_104099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|67643634|ref|ZP_00442379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|76812034|ref|YP_334920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121598737|ref|YP_991826.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|124384687|ref|YP_001027319.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10229]
 gi|126448584|ref|YP_001082744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998642|ref|ZP_02264500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|167740317|ref|ZP_02413091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 14]
 gi|217425702|ref|ZP_03457192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|254178840|ref|ZP_04885494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|254191017|ref|ZP_04897523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254202820|ref|ZP_04909183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|254208162|ref|ZP_04914512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|254258612|ref|ZP_04949666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
 gi|254299371|ref|ZP_04966821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|254357634|ref|ZP_04973908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|52429450|gb|AAU50043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|76581487|gb|ABA50962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121227547|gb|ABM50065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|126241454|gb|ABO04547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747067|gb|EDK54144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|147752056|gb|EDK59123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|148026698|gb|EDK84783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|157809125|gb|EDO86295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|157938691|gb|EDO94361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160694754|gb|EDP84762.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|217391290|gb|EEC31322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|238525013|gb|EEP88443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065321|gb|EES47507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|254217301|gb|EET06685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
          Length = 514

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 156/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + +V  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 483

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 247/467 (52%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR +  G IF+A  G   +G+ +  QA+A GA A V+SS Y+   F + ++  
Sbjct: 23  VRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAIA-VLSSLYN--PFLSVVQ-- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++ ++     +  A+R Y       +++ +TGT+GK++V+  V+++ +RSG  +  I
Sbjct: 78  ---IIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSCLVRELMERSGRRTGLI 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI     +NR+    TTP  I L K  + +  Q ++   +E SS G+   R+   +
Sbjct: 135 G---TIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGRVRETE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +AG  TN+  DH+D+H + + Y  AK + F   LP++  A++  D  Y+   +      
Sbjct: 192 FLAGVLTNIISDHLDFHGSLEEYIAAKKQFFAS-LPEKGIAVVNLDCEYAPSFLN----- 245

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LFP----LPGEFQVYN 314
           G +  +V Y    IH +   A +   ++ +   G  +D      +FP    L GE  VYN
Sbjct: 246 GSQARAVSYA---IHQE---ADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGEHNVYN 299

Query: 315 ALVAAGLCIA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            L  A L +    +G D A ++  +  L    GR + +        +Y+DYAHT ++L+ 
Sbjct: 300 VL--ASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLGPFP--VYIDYAHTPDALDN 355

Query: 372 ILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + + +  +    GR+I+VFGCGGDRD+ KRP+M K++ +    + VT DNPR+EDP++I 
Sbjct: 356 VCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVS-EHYGFSFVTSDNPRTEDPDQII 414

Query: 430 AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE   I
Sbjct: 415 ADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGYQI 461


>gi|53720640|ref|YP_109626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
 gi|167817535|ref|ZP_02449215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 91]
 gi|167896010|ref|ZP_02483412.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 7894]
 gi|167920624|ref|ZP_02507715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei BCC215]
 gi|52211054|emb|CAH37042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
          Length = 514

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 156/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + +V  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|72161509|ref|YP_289166.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
 gi|71915241|gb|AAZ55143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
          Length = 534

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 238/490 (48%), Gaps = 44/490 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR ++ G ++VA+ G +  G  F  QA   GA A++   A    D +A  R  
Sbjct: 56  VTGVTHDSRAVRPGDLYVAVQGQRVHGAKFAAQAARAGAAAVLTDPAG--YDRAAATR-- 111

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P++ V + R  L   A+ +YG HP     ++  TGTSGK++V+  V+   + +G+ +  
Sbjct: 112 LPVITVPDPRSRLGDVAAWIYG-HPARELLLIGTTGTSGKTTVSYLVESGLREAGMRTGL 170

Query: 147 IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   T+     D R    LTTP    L    + +  + V   ++E SSH L   R+ G+
Sbjct: 171 VG---TVEIRVDDERIDSSLTTPEATELHGLFALMRERDVAGAAMEVSSHALALGRVAGV 227

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +     FTNL +DH+D+H     YF  K RLF     K   A++  DD++ + ++ R   
Sbjct: 228 RYDVAVFTNLSQDHLDFHADLHDYFETKARLFTPEFAKV--AVVNRDDSFGRTLIDRITE 285

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQV 312
            G   ++      F       A      V +   G  F  + P          LPG F V
Sbjct: 286 QGAIPVTT-----FSATGDTAADWYATDVVLEAGGSRFRVVGPGGMAMDASVRLPGPFNV 340

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ A    I  G+     +  +     VPGR E V        I VDY+H   ++E +
Sbjct: 341 ANAMAAIVALIEAGVPLPTAVAGVAAARGVPGRMERVDEGQDFTAI-VDYSHKPGAIEAV 399

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L ++R IT GR+ +V GCGGDRD+GKRP+MG+ A  LAD  I+TDDNPRSEDP  I   +
Sbjct: 400 LTSLRPITEGRLTIVVGCGGDRDRGKRPLMGEAAARLADAVILTDDNPRSEDPVTIITSM 459

Query: 433 IHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           + G+             + +R  AI  A+      DV+VVAGKGHE    V  G++ +  
Sbjct: 460 LEGVAKVPVAQRARITVEPDRRTAIELAVTRAQPGDVVVVAGKGHERGQHV--GDRILPF 517

Query: 485 DC-DIIREIL 493
           D  D++RE +
Sbjct: 518 DDRDVLREAI 527


>gi|302528474|ref|ZP_07280816.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
 gi|302437369|gb|EFL09185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
          Length = 519

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 240/460 (52%), Gaps = 47/460 (10%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           ++H+  G +F  + G +  G  F  QA+A GA A++     S  D  A   +  P+LV  
Sbjct: 53  AQHVLPGDLFAGLPGARAHGADFSDQALAAGAAAVLTDP--SGADRPALRDAPVPVLVHP 110

Query: 97  NTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
           + R  L   A+ +YG+ P    ++L VTGTSGK++ +  V    + +G ++  IG   T 
Sbjct: 111 DPRAALGEIAAWIYGE-PSLHLSVLGVTGTSGKTTTSYLVDSGLRAAGRTTGLIGTVETR 169

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           I+     +  TTP    L   L+ +  +GVTHV +E SSH L   R++G +   G+FTNL
Sbjct: 170 IAGERLASGFTTPEAPDLQALLAVMLERGVTHVPMEVSSHALALGRVNGTRFAVGAFTNL 229

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            +DH+D+H+  + YF AK  LF+    + +  ++  D A+ + ++        + ++V  
Sbjct: 230 SQDHLDFHKDMEEYFAAKSLLFDG---RSTTEVVVVDSAWGQALLT------PQTVTVSI 280

Query: 273 QGKFIHLKKVCAIH----NKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +     L +   I      +Q  T+   +G       PLPG F V NA++AA +  + GI
Sbjct: 281 EAGADALWRAADIEATPAGEQTFTLLGPDGLSRAAKIPLPGTFNVANAVLAAAILASAGI 340

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--------VDYAHTSNSLEMILKNIRTI 379
           D+  ++  L  + V PGR E         R+Y        VDYAH   ++   L  +R  
Sbjct: 341 DADDIVAGLAAVEV-PGRME---------RVYLGQEFTAVVDYAHKPAAVAQGLDALRAR 390

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436
           T GRII V GCGGDRD  KRP+MG+ A+  +D+ IVTDDNPRSEDP  IRA ++ G    
Sbjct: 391 TEGRIITVLGCGGDRDTAKRPMMGEAAVRRSDLLIVTDDNPRSEDPAAIRAAMLAGARAV 450

Query: 437 -PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            P      +E  +R EAI  A+ +    D++++AGKGHET
Sbjct: 451 GPAAGGEVLEIADRREAIAHAVSLAGPGDIVLIAGKGHET 490


>gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
 gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
          Length = 486

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 154/482 (31%), Positives = 238/482 (49%), Gaps = 34/482 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I    +DSR ++ G  FV I G   DGH F+ +   +GA A++V       +    I
Sbjct: 20  EAEITTFINDSRKVEKGSAFVCISGAVVDGHDFVEEVAQKGAAAVIVEREVEAPEDMTVI 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           R       V ++R  L+L ++  +G +P + + + G +G     +    I         +
Sbjct: 80  R-------VADSRYALALMSAAYFG-YPADKMKIIGITGTKGKTTTTYMIKSILEGVGHK 131

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI +   D ++    TTP    + +  + +   G   V +E SS GL  HR  GI
Sbjct: 132 VGLIGTIEAIIGDEKIPAANTTPESYTIHQYFARMVEAGCDSVVMEVSSQGLMLHRTAGI 191

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G FTNLGRDHI  + H+  + Y   K  LF++        I   DD Y ++V  RA
Sbjct: 192 PFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLLFQQC----RLGIANVDDEYFEDVFSRA 247

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNA 315
               CRV + G+  K   L+ V     +      V   V G  DFD    +PG+F VYN+
Sbjct: 248 ---TCRVETFGFSEK-ADLRAVDTHLVSRPGYLGVAYHVSGLMDFDVEIDIPGKFSVYNS 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +C    +    + + L K+  V GR E +  +     + +DYAH + SLE +L  
Sbjct: 304 LTAIAVCRHFQVPVEQIKKAL-KVANVKGRIEMIPVSDEF-TLMIDYAHNAMSLESLLTT 361

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI--- 432
           ++     R++ +FGCGG+R + +R  MG+++  LAD++I+T DNPR E+P+ I  +I   
Sbjct: 362 LKEYEPARLVCLFGCGGNRSRERRYEMGEVSGRLADLSIITSDNPRFEEPQAIIDDIKTG 421

Query: 433 IHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           IH   G ++E  +R EAI+ AIE   + DV+V+AGKGHE    +   +  M     +IRE
Sbjct: 422 IHKTDGKYVEICDRKEAIKYAIEHGQRGDVIVLAGKGHEDYQEIKGVKYPMDERV-LIRE 480

Query: 492 IL 493
           IL
Sbjct: 481 IL 482


>gi|254821906|ref|ZP_05226907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium intracellulare ATCC 13950]
          Length = 514

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 153/482 (31%), Positives = 230/482 (47%), Gaps = 34/482 (7%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            P L   +   P   R      +  V+  ++ ++ G +F A+ G+   G  +   AI +G
Sbjct: 17  LPALAADIGAAPAGDRAVPNLPVTGVTLRAQEVRPGDLFAALPGSTTHGARYAGDAIERG 76

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A V++ A  + +  A +  + P+LV  + R  L   A+ +YG   E +  V  T    
Sbjct: 77  AVA-VLTDAGGVAEMGA-LGQSVPVLVHPDPRGVLGGLAATVYGNPSERVTVVGVTGTSG 134

Query: 128 SVAS--FVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVT 183
              +   ++   + +G ++  IG T  I     D  + LTTP    L   L+ ++ QGV 
Sbjct: 135 KTTTTYLIESALRAAGHTAGLIG-TIGIRIDGADIPSALTTPEAPALQAMLAAMAEQGVD 193

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KES 242
            V +E SSH L   R+DG +   G FTNL RDH+D+H T   YF AK  LF+   P +  
Sbjct: 194 TVVMEVSSHALTLGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKAMLFDPSSPLRAR 253

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGK 298
             ++  DD   + +  RA +A    ++V  +G+  H +           ++   I   G 
Sbjct: 254 RVVVCVDDDAGRAMAARAGDA----ITVSAEGRPAHWRATDVAPMGAAGQRFTAIDPAGA 309

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  LPG + V N LVA  +  A+G+        L +   VPGR E +      G+ 
Sbjct: 310 RHQLGVRLPGHYNVANCLVALAILDAVGVSPEQASTGLLQAR-VPGRMEEIDA----GQD 364

Query: 359 Y---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   VDYAH   +L  +L  +      R+ VVFG GG+RD GKR  MG  A +LAD+ +V
Sbjct: 365 FLALVDYAHKPGALRAVLTTLARPDR-RLAVVFGAGGERDPGKRAPMGATAAELADLVVV 423

Query: 416 TDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           TDDNPR EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGH
Sbjct: 424 TDDNPRGEDPASIRREILAGATESGCAADIVEIADRRDAIRHAVAWAGPGDVVLIAGKGH 483

Query: 470 ET 471
           ET
Sbjct: 484 ET 485


>gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
 gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
          Length = 485

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 248/492 (50%), Gaps = 61/492 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ DSR+I  G IF+A  G + DG+ F   A+  GA A VVSS Y           
Sbjct: 24  EVRNLTKDSRNIGFGDIFIANKGKRCDGNDFASLAVENGAIA-VVSSIY----------- 71

Query: 89  NTPILVVDNTRKFLSLFASRL---YGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
           N  + VV      LSL  ++L   Y  +P     ++ +TGT+GK++V+  ++ +      
Sbjct: 72  NPFLSVVQIISPNLSLLEAQLAAKYYNYPSRKLCVVGITGTNGKTTVSHLIKFLFDACDK 131

Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            S  IG   TI     +NR+    TTP    L K L+ +    +T   +E SS GL   R
Sbjct: 132 PSGLIG---TIEHILGNNRIQDGFTTPESCLLQKYLAEMVKSNLTAAVIETSSIGLVLDR 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L  ++   G  TN+  DH+D+H + + Y  AK++LF + L     A++  D   +K+ ++
Sbjct: 189 LANVEFDVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQ-LSDSGLAVVNNDLPQAKQFLE 247

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGE 309
                  R + V Y  + +      A +    +  S  G DFD +          PL G+
Sbjct: 248 -----ATRAVPVTYGIEQL------ADYRASNLRFSPFGADFDLIHKGEIFPCHSPLIGQ 296

Query: 310 FQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           + VYN L A  +    +  D   ++  +  +    GR E +   S    IY+DYAHT ++
Sbjct: 297 YNVYNVLAAIAVTHQRLNCDLQQLVSLVASVKSPRGRLEPI--QSGPCPIYIDYAHTPDA 354

Query: 369 LEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           L+ + + +RT+  + G++IVVFGCGGDRD+ KR IM ++ ++    A+VT DNPR EDPE
Sbjct: 355 LDNVCQTLRTLLPSGGKLIVVFGCGGDRDRSKRKIMAQV-VEKYGFAVVTSDNPRGEDPE 413

Query: 427 KIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            I  EI     GF+++      +R +AI  A+ + + +D+++VAGKGHET  I  +    
Sbjct: 414 TIVNEICS---GFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETYQIFKHQTIA 470

Query: 482 MSVDCDIIREIL 493
              D +++ E+L
Sbjct: 471 FD-DREVVHEVL 481


>gi|300741260|ref|ZP_07071281.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
 gi|300380445|gb|EFJ77007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
          Length = 572

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 157/516 (30%), Positives = 250/516 (48%), Gaps = 59/516 (11%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +    +   Q  E  +  +S DSR ++   ++VA+ G K  G  F  +A+   A AI+
Sbjct: 42  EALGAHPVLEHQGSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101

Query: 73  VSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128
             +A +     A +      +LV D+ R  +   A+ +YG       N  AVTGT+GK++
Sbjct: 102 TDTAGARMIREANLSLDGCSLLVCDSLRPVIGSLAALIYGSQDHKNLNRYAVTGTNGKTT 161

Query: 129 VASFVQQICQ-----RSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
               ++ + +     ++GL  + QI     +   +  + LTTP  +++   L+ +  +GV
Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQI----LVDGVSVPSALTTPESVHVHSLLAIMGERGV 217

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +H ++E SSH +D HR+DG+      FTNL +DH+D H T Q YF++K +LF    P+ +
Sbjct: 218 SHAAMEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLF---TPERT 274

Query: 243 P-AIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEG 297
             A+I ADD + +++++ A      G  V  V   G  + L +V A         I+VE 
Sbjct: 275 ECAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYG--MGLAEVPAEFGPLDWAVINVER 332

Query: 298 KDFDFLFP--------------LPGEFQVYNALVAAGLCIAIG-------IDSALVLEHL 336
                 F               LP +F V NA +AA L + IG       I    + +  
Sbjct: 333 DGLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAA-LMVYIGASEEERIILRPALADGT 391

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
               +VPGR + +   S      VD+AH  + L   L+ +     GR+I+VFG  G+RD 
Sbjct: 392 ALTPIVPGRMQLI---SLAPHTIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDH 448

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------- 447
            KRP+MG+IA   ADI IVTDD+P  EDP  IR  ++ G      +G R           
Sbjct: 449 LKRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPRE 508

Query: 448 -AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            AI  AIE+ + +D +++AG+GHET   V   + ++
Sbjct: 509 VAIARAIELADARDAILIAGRGHETAQDVAGTDVQL 544


>gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
 gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
          Length = 555

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 146/463 (31%), Positives = 226/463 (48%), Gaps = 38/463 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A++   + + +  +A +  
Sbjct: 83  EVTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGAVAVLTDPSGAERAAAAGL-- 140

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P LVVD+ R  +   A+ +YG+   ++L   +TGTSGK++ A  V+      GL + +
Sbjct: 141 --PALVVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTTTAYLVE-----GGLRTVR 193

Query: 147 -IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             G   T+     D R+    TTP    L    + +  +GV  V +E SSH L   R+DG
Sbjct: 194 STGLIGTVEMRVGDERIKSERTTPEATDLQALFAVMRERGVDSVVMEVSSHALVLGRVDG 253

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRA 260
                  F NL  +H+++H   + YF AK +LF    P+ S   ++  DD Y + ++  A
Sbjct: 254 CVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPERSRLGVVNLDDEYGRRLVDEA 310

Query: 261 HNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                   + G+       + V     +     +  +G+      PLPG F V N L A 
Sbjct: 311 TVPVVTFSAEGHPDADWRAEDVRVGPLDSTFTVVGPKGERISARSPLPGSFNVANTLAAV 370

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNI 376
                 GID     + +  +  VPGR E V      G+ Y   VDYAH ++++E +LK +
Sbjct: 371 AALAVAGIDPQTAADGVAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLKAL 426

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R +T GR+ +V GCGGDRD  KR  MG     L+D A++T DNPRSEDP  I A ++ G 
Sbjct: 427 RKVTEGRLHIVLGCGGDRDTTKRAPMGAAMARLSDTAVLTSDNPRSEDPLAILATMLEGA 486

Query: 436 --IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +P   E+G      +R  AI   +      D ++VAGKGHE
Sbjct: 487 ASVPAH-ERGEVLLFEDRAAAIAATVARARPGDTVLVAGKGHE 528


>gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70]
 gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70s]
 gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis Sweden2]
 gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/150]
 gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/11023]
          Length = 483

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 242/461 (52%), Gaps = 38/461 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR +  G IF+A  G   +G+ +  QA+A GA A V+SS Y+   F + ++  
Sbjct: 23  VRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAIA-VLSSLYN--PFLSVVQ-- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++ ++     +  A+R Y       +++ +TGT+GK++V+  V+++ +RSG  +  I
Sbjct: 78  ---IIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSCLVRELMERSGRRTGLI 134

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TI     +NR+    TTP  I L K  + +  Q ++   +E SS G+   R+   +
Sbjct: 135 G---TIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGRVRETE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +AG  TN+  DH+D+H + + Y  AK + F   LP++  A++  D  Y+   +      
Sbjct: 192 FLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS-LPEKGIAVVNLDCEYAPSFLN----- 245

Query: 264 GCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           G +  +V Y   Q       ++    +     I  +GK F     L GE  VYN L  A 
Sbjct: 246 GSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFLCETSLIGEHNVYNVL--AS 303

Query: 321 LCIA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           L +    +G D A ++  +  L    GR + +        +Y+DYAHT ++L+ + + + 
Sbjct: 304 LAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLGPFP--VYIDYAHTPDALDNVCRILL 361

Query: 378 TI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +    GR+I+VFGCGGDRD+ KRP+M K++ +    + VT DNPR+EDP++I A+I  G
Sbjct: 362 QLLPKDGRLIIVFGCGGDRDRVKRPLMAKVS-EHYGFSFVTSDNPRTEDPDQIIADICKG 420

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                ++ + +R  AI  AI M + +D+++VAGKGHE   I
Sbjct: 421 FSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGYQI 461


>gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
 gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
          Length = 487

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 227/452 (50%), Gaps = 28/452 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR ++ G +FVAI G + DGH FI QA+  GA A+V   A  L         
Sbjct: 24  EIRGIEMDSRKVRKGSLFVAIKGFQTDGHHFIGQAVENGAAAVVGEEALEL--------- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N P + V ++R  L   AS  Y +      I+ +TGT+GK++ A  ++ I + +G +   
Sbjct: 75  NVPYIKVTDSRTSLGKLASCFYDRPSRKHKIIGITGTNGKTTTAYILKHILETAGRTCSL 134

Query: 147 IGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +G  S I     +   N  TTP  + + K LS    +    V +E SSH L+Q R +G++
Sbjct: 135 LGTVSNIINNREYKTSN--TTPDALQIQKMLSKSLDE---FVVMEISSHALEQSRTEGLE 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L  G FTNL  DH+DYH+    YF  K ++F  LL      +I   +++ +++ +     
Sbjct: 190 LDYGLFTNLAHDHLDYHENMDQYFLDKKKIF-TLLKDGGKGVINLYNSWGEKMAEDLQKE 248

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              ++ +G   +   +K V AI+ +    + ++G+ F+  FPLPG   VYNA +A    +
Sbjct: 249 KIPLILLG-DDQCCSIKDV-AINGRTVFILEMKGQSFEIEFPLPGHHNVYNAAMAFLTGV 306

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID+A +++ L     +PGRFE +  +  G +  VDYAHT ++ E  L+  R   + R
Sbjct: 307 DLGIDTADIIKALAGFPGIPGRFETI-IHPSGAKFVVDYAHTVDAFEYCLEAARQQGAER 365

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK 442
           I  ++G  G RDQ KR  M K +        +T D+   E  +++ +++      F   K
Sbjct: 366 IFQIYGFRGGRDQSKRMDMIKASAKYCHKFYLTADDLNDESEDEMISQLHRLNKEFGCGK 425

Query: 443 G----NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           G    +R  AI+ A     + D + + GKG E
Sbjct: 426 GEVIPDRTLAIQKAWREAGESDWIFITGKGPE 457


>gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
 gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
          Length = 485

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 221/454 (48%), Gaps = 31/454 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N +   SR+++ G IFVAI G K DGH FI +AI+ GA A+V  + Y           
Sbjct: 21  EVNRIQFKSRNVKKGDIFVAIKGLKHDGHNFINEAISNGAVAVVGEAEYDCLP------- 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P + V + R+ L   A  LY    +  N++ +TGT+GK++ A  V+ I Q +  S   
Sbjct: 74  -VPYIKVQDARQALGNLAKTLYCDPSKMHNMIGITGTNGKTTTAYMVKHIFQTASESCSL 132

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
               ST+S+F     L    TTP  + L K L     + V    +E SSHGL Q R++GI
Sbjct: 133 F---STVSNFVNGTELMSTATTPDILELNKMLRMSMDKNVV---MEVSSHGLHQKRVEGI 186

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G FTNL  DH+DYHQ  + YFN K  LF +LL K   AII +   + ++++ +  N
Sbjct: 187 EFNYGIFTNLTHDHLDYHQNMEEYFNTKAGLF-KLLKKNGEAIINSGCPWGRKLINQLKN 245

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               VLS G   +   L+ +       ++ I       +   P+PG   + NAL A    
Sbjct: 246 KRQSVLSFG-TSENDDLQLLSTKDGVSKIRIQGSNVKLEIKMPMPGNHNLQNALAAILCA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G++   +   +E    VPGRFE     S+     +DYAHT + LE +L+ ++ +   
Sbjct: 305 YRAGVNVNDIKRAVESFPGVPGRFE--EYYSQSVNFILDYAHTPDGLENLLETVKKLNGN 362

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           RI+ VFG  G++D  KR  M  I+    D  I+T D+      EK+  ++   +  +I  
Sbjct: 363 RIVHVFGFRGNKDMTKRLAMLDISAKYCDKIILTLDDLNGVALEKMILDLKKSV-NYIGT 421

Query: 443 GN------RIEAIRTAIEMLNKQDVLVVAGKGHE 470
            N      R  AI  A +   K D +V+ GKG E
Sbjct: 422 NNIHLIIDRTRAIEYAWKNSIKGDRIVITGKGPE 455


>gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 495

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 155/478 (32%), Positives = 240/478 (50%), Gaps = 57/478 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  + +DSR ++ G +F+ + G+  DGHLF  QA  +GA A+VV     +         
Sbjct: 22  EITGIETDSRQVKPGDLFICLPGHTVDGHLFAAQAAEKGAAALVVERKLEV--------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P ++V ++R  ++  A+  + +      ++ VTGT+GK++    ++ I    GL +  
Sbjct: 73  DLPQVIVKDSRFAMAGLANTFFDQPSARMKMIGVTGTNGKTTTTYLIETIMNDHGLKTGL 132

Query: 147 IGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           IG         SF      TTP  + L + L+ +++ G     +E SSH L+Q R+ G  
Sbjct: 133 IGTIQMKYGNQSFPMPR--TTPEALELQRYLNDMANAGTECCVMEVSSHALEQGRVKGTD 190

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP----AIIYADDAYSKEV 256
                FTNL +DH+DYH T + Y  AK   F  L     K+      A++ ADD  S   
Sbjct: 191 FRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDEKSRKYAVLNADDDASAYF 250

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLP 307
            K        V++ G  G+   ++          ++I+ +G  F         D    + 
Sbjct: 251 AKIT---AAEVITYGL-GEDADVRA-------SNISITAQGTSFHVDTFRGSADISIRMV 299

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+F VYNA+ A    +  G+    +   LE +  V GR E V    +   + VDYAHT +
Sbjct: 300 GKFNVYNAMAAIAAALLEGVPLEDIKSSLESVPGVDGRVEVV-DEGQPYAVIVDYAHTPD 358

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            LE +L+ +     GR++ VFGCGGDRD+ KRPIMGKIA   +D+ +VT DNPR+EDP+ 
Sbjct: 359 GLENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYSDVVLVTSDNPRTEDPDL 418

Query: 428 IRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I  +I  G+   IE G          +R +AI  AIEM +  DV+++AGKGHET  ++
Sbjct: 419 ILKDIEAGL---IEDGVAAESYNLIVDRRKAIEKAIEMASPGDVVLIAGKGHETYQLI 473


>gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 494

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 55/477 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  + +DSR ++ G +F+ + G+  DGH F  QA  +GA A+VV            +  
Sbjct: 22  EITGIETDSRQVKPGDLFICLPGHTVDGHQFAAQAAGKGAAALVVER---------KLEV 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P ++V ++R  ++  A+  Y +      ++ VTGT+GK++    ++ I    GL +  
Sbjct: 73  DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTTTYLIETIMNDFGLKTGL 132

Query: 147 IGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG T  +    Q   +  TTP  + L + L+ +++ G     +E SSH L+Q R+ G   
Sbjct: 133 IG-TIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVMEVSSHALEQGRVKGTDF 191

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESP---AIIYADDAYSKEVM 257
               FTNL +DH+DYH T + Y  AK   F  L       ES    A++ ADD  S    
Sbjct: 192 RTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDESARKYAVLNADDDASAYFA 251

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPG 308
           K+       V++ G  G+   ++          ++I+ +G  F         D    + G
Sbjct: 252 KQT---AAEVITYGL-GEDADVRA-------SNISITAQGTSFHVDTFRGSADISIRMVG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F VYNA+ A    +  G+    +   LE +  V GR E V    +   + VDYAHT + 
Sbjct: 301 KFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVV-DEGQPYAVIVDYAHTPDG 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +     GR++ VFGCGGDRD+ KRPIMGKIA   +D+  VT DNPR+EDPE I
Sbjct: 360 LENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYSDVVFVTSDNPRTEDPELI 419

Query: 429 RAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             +I  G+   +E G          +R +AI  AIEM +  DV+++AGKGHET  ++
Sbjct: 420 LKDIEAGL---VEDGVATESYKLIVDRRKAIEKAIEMASPGDVVLIAGKGHETYQLI 473


>gi|167580468|ref|ZP_02373342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis TXDOH]
          Length = 514

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 235/489 (48%), Gaps = 43/489 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +FVA   +  D   FI  A+A+GA A++    Y  + F A       
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T  AY  AK +LF         A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLHCAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQV 312
              RV ++ Y            +++ A + +   T     ++    + D      G F V
Sbjct: 255 LAGRVRTIAYGIDAPAQAADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNV 314

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370
            N L   G  +A  +     L  +E+L  V GR + +G   +     + VDYAHT ++LE
Sbjct: 315 SNLLAVLGTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALE 374

Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L+ +R I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P+K
Sbjct: 375 KTLEALRPIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQK 434

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I+ G+          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   
Sbjct: 435 IIDQIVAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFS 493

Query: 485 DCDIIREIL 493
           D D  R  L
Sbjct: 494 DQDHARLAL 502


>gi|126452893|ref|YP_001067791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|167847421|ref|ZP_02472929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei B7210]
 gi|242316322|ref|ZP_04815338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
 gi|126226535|gb|ABN90075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|242139561|gb|EES25963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
          Length = 514

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 156/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + +V  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309
              RV ++ Y    I      A  +++ V  +V        F +              G 
Sbjct: 255 LTGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  + KL  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSED
Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|291521921|emb|CBK80214.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 507

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/496 (30%), Positives = 238/496 (47%), Gaps = 52/496 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +++  P ++ Q S     W +  I  ++  S+ +    +F+ I G ++DGH +I +A  +
Sbjct: 6   LFERIPAVLCQGS-----W-DTDIASIAMCSKEVTNNSLFICIKGMEQDGHQYIQEAAER 59

Query: 67  GAEAIVVSSAYSLQDFSATIRSN-------------------TPILVVDNTRKFLSLFAS 107
           GA A +V  A+  +  SA++  N                     I+ V NTR+  +  A+
Sbjct: 60  GAAACLVEEAFWKK--SASVHGNLKQAEKKTSAYGELKLPEQMTIVSVQNTREAAAWAAA 117

Query: 108 RLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTS-TISSFAQDNRLT 163
             Y ++P   L V G +G     S    ++ I + +G  +  +G     I    +    T
Sbjct: 118 AFY-RYPSKELKVIGITGTKGKTSTTFMIRDILEAAGYKTGLLGTIDYEIGEEKKRAERT 176

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQ 221
           TP  I + + L  ++  G     +E SS GL  HR D I    G FTNLGRDHI    H+
Sbjct: 177 TPEAIDIQRYLRKMADSGCRFAVMEVSSQGLKLHRSDSILFDVGVFTNLGRDHIGPKEHK 236

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLK 280
               Y + K  LF+    K    I   DD Y +E+ K   +A C+V +   + K  +   
Sbjct: 237 DMAEYAHYKSLLFQ----KCCFGIGNIDDPYYREIFK---DASCQVCTYSCRQKADVQAS 289

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +  ++   Q+    +    ++    PGEF VYNA+ A  +C   GID  ++ + L+ + 
Sbjct: 290 DIMLVNRNGQLGTFFKVNGEEYAVSAPGEFSVYNAVAAITVCRHYGIDQEIIRKALKTIR 349

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           V PGR E +  N RG  + +DYAH + SL+ IL+ +R     ++ V+FGCGG R   +R 
Sbjct: 350 V-PGRVEVI-DNDRGYLLLIDYAHNAMSLKNILETMRRYHPRQLWVLFGCGGGRSAARRR 407

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIE 454
            MG +A   AD  ++T DNPR E+PE+I   I  G+     KG      +R EA+R  + 
Sbjct: 408 EMGCVAGKYADFTVITSDNPRYEEPERIMQTIEEGMKE--TKGQYQMMVDRKEAMRFMLA 465

Query: 455 MLNKQDVLVVAGKGHE 470
                D+L++AGKGHE
Sbjct: 466 QGRPGDILILAGKGHE 481


>gi|300933359|ref|ZP_07148615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium resistens DSM 45100]
          Length = 552

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 151/505 (29%), Positives = 232/505 (45%), Gaps = 65/505 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++   +  S  ++AG +F A+ G K  G  F     A  ++A  V +  + +D       
Sbjct: 23  EVTSAAIGSTDVRAGGLFCAVPGLKTHGAQF-----AGTSQATAVLTDPAGEDILEAQGV 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P L+VD+ R+++   A+ +YG HP   L+V G +  +S  +    + +++ L +  +G
Sbjct: 78  ELPRLIVDDVREWMGPVAAEIYG-HPSRRLSVIGIT-GTSGKTTTSYLVEKALLPNHSVG 135

Query: 149 PTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              T    I+      +LTTP    +   L+ +  +GVTHV +E SSH L+  R+ GI  
Sbjct: 136 IIGTTGTRINGRPVPTKLTTPEAPTMQSLLAEMVDEGVTHVVMEVSSHALELGRVHGIDF 195

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-----SPAIIYADDAYSKEVM-- 257
              +FTNL +DH+D+H T + YF AK +LF E   ++       A+I  DD + + +   
Sbjct: 196 DVAAFTNLSQDHLDFHPTMEDYFQAKAKLFREQAGEKHDVKLPAAVICVDDEWGQRMAQL 255

Query: 258 --KRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNK---------QQVTISVEGKD------ 299
             +R  +AG  V  V   +    H     A+            + V ++  G+       
Sbjct: 256 ASQRQGDAGGAVAPVLAVRTAGTHDSTDAAVAGAYENIPTWVLESVQVTPSGRQEIRFHT 315

Query: 300 -----------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                       ++   L G F V N+ VA      +G D     +HL  +  VPGR + 
Sbjct: 316 GATHAPDAREPLEYSIGLAGSFNVANSAVALACVAQLGEDVEAAAQHLRDVQ-VPGRMQA 374

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           V    +     VDYAH   ++  +++ +        GRI +V G GG+RDQ KRP MG  
Sbjct: 375 V-DEGQDFLAMVDYAHKPGAVAAVVRTLADYLPTKEGRIGIVIGAGGNRDQDKRPKMGYE 433

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKG------------NRIEAIRTA 452
           A  +AD   VTDDNPR EDP  IR  I  G   GF E+G            +R EAI  A
Sbjct: 434 AALVADAVFVTDDNPRDEDPAPIREAIYSGAEAGFAERGVEKKTVTLANIADRAEAITAA 493

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTN 477
           ++     D +VVAGKGHET  +V  
Sbjct: 494 VQWAQPGDAIVVAGKGHETGQLVAG 518


>gi|295094721|emb|CBK83812.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp.
           ART55/1]
          Length = 404

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 207/401 (51%), Gaps = 36/401 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAKA 173
           ++ VTGT GK++VA  ++ +  R G  +  +G       I      N  TTP  IYL + 
Sbjct: 3   VIGVTGTKGKTTVACMIKSMLDRWGRRTGLVGTIEIDDCIRKIPSVN--TTPGTIYLHRK 60

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKM 231
           L+ + + G  +  +E SS GL   R+ G++     +TNL  DHI  + H+T   Y   K 
Sbjct: 61  LADMVANGAEYCVMEVSSQGLMHGRVSGVEFDICVYTNLAPDHIGRNEHRTFAEYGRWKR 120

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------------GKFIH- 278
            LF     K   A+I ADD YS  +   A NAG  V+  G +               IH 
Sbjct: 121 SLF----SKCKTAVINADDMYSGCIAAEAVNAGAEVVYYGVRNHTAAGDGNVCMAGAIHR 176

Query: 279 --LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             L +V  I  + + T   +G+       +PGEF VYN+L A   C  IGI   ++ +  
Sbjct: 177 LILHRVMGIGYECERT---DGESTYMTVGIPGEFNVYNSLAAVTTCGIIGIPMEVMQDSQ 233

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
             + V  GR E V       RI++DYAH + SLE +L  +R     R+I +FGCGG+R  
Sbjct: 234 SDMKV-RGRLEPVEIPGYA-RIFIDYAHNAVSLENVLTTLRQYRPKRLICLFGCGGNRSA 291

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIRTA 452
           G+R  MG ++  LAD+ ++T DNPR E PE I  +I    + G   +++  +R++AIR A
Sbjct: 292 GRRKGMGFVSGRLADMTVITSDNPRFESPEAIMTDIETGVLEGGGEYVKICSRLDAIRYA 351

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +E+ ++ D++++AGKGHET   +     +M  + ++IR+IL
Sbjct: 352 LEISDRDDIVLLAGKGHETYQDIEGRRTQMD-EREMIRQIL 391


>gi|90655385|gb|ABD96226.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured marine type-A
           Synechococcus GOM 3M9]
          Length = 511

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/310 (38%), Positives = 172/310 (55%), Gaps = 16/310 (5%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-- 244
           +E SSH L Q R+ G +  A  FTNL +DH+DYH + QAYF AK  LF + L +  PA  
Sbjct: 183 MEVSSHALAQQRVAGCRFAAAVFTNLTQDHLDYHASMQAYFEAKAALFADPLLQSGPARA 242

Query: 245 IIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           ++ +DD +  ++ +R  +   R  +   G + +   L+        + +T   EG    F
Sbjct: 243 VVNSDDPWGLQLAERLGDRCWRSSLSEPGAELRMSDLEMTARGVRGRLITPLGEGP---F 299

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---GTNSRG-GRI 358
           + PL G F + N L A G+ +   +    +LE +E    VPGR E V   G ++     +
Sbjct: 300 VSPLLGRFNLMNLLQAVGVLVQCQLPLMPLLEAIEGFRGVPGRMERVLLPGADAHALPTV 359

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE  L   R  + GR+I VFGCGGDRD+GKRP M  IA  LAD  +VT D
Sbjct: 360 LVDYAHTPDGLENALAASRPFSRGRLICVFGCGGDRDRGKRPQMASIAARLADRVVVTSD 419

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+EDP++I  +++ GIP   +   +G+R  AI  AI     +D+++VAGKGHE   I+
Sbjct: 420 NPRTEDPQRILEDVVAGIPDGTDSLVEGDRAAAIAAAIAAAAPEDLVLVAGKGHEDYQIL 479

Query: 476 TNGEKKMSVD 485
             G  K+  D
Sbjct: 480 --GTDKVHFD 487


>gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 514

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 232/476 (48%), Gaps = 35/476 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTP 91
           V+  S  +Q G ++V + G +  G  F   A A GA A++        D  A  R S  P
Sbjct: 42  VTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDP-----DGLAEARDSGLP 96

Query: 92  ILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +++  + R  L   A+ ++   ++P  +  VTGT+GK+SV   +  + ++ G+ +   G 
Sbjct: 97  VILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVT---GL 153

Query: 150 TST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           TST    I   +  +RLTTP    L   L+ +    V  V++E S+  L +HR+DG+   
Sbjct: 154 TSTAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFD 213

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +F NL  DH+D +   + YF AK   F+    +    ++  D  + + +++++     
Sbjct: 214 VAAFINLSHDHLDDYADFEEYFEAKAAFFDPDRARR--GVVSLDTVWGQRIVEQSR---I 268

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLF---PLPGEFQVYNALVAAGL 321
            + ++  Q       +V  +      T   +EG D   L    P+PG F   NA +A  +
Sbjct: 269 PMTTISAQPGIEADWRVTVLEQTPDSTGFRLEGPDNRVLVSSVPVPGWFMAANAGLAIVM 328

Query: 322 CIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            +  G D   V   L++       +PGR E V  ++ G   +VDY HT ++ E  L+ +R
Sbjct: 329 LVESGYDLDAVAHVLDRDGGIQAYIPGRAERVSGDT-GPLFFVDYGHTPDAFEQTLQALR 387

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             T G++++VFG  GDRD  KR  MG IA  LAD+ ++TD +PR EDP  IRA +I G  
Sbjct: 388 PFTPGKLVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRASLIAGAR 447

Query: 438 GFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             +      E  +   AIRTA+ ++ + D ++VAG GHE  H V   +   S   D
Sbjct: 448 AAVPDREIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVAGKKIPFSARDD 503


>gi|225175502|ref|ZP_03729496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168831|gb|EEG77631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 502

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 204/409 (49%), Gaps = 24/409 (5%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRS 140
           A + ++  ++ V + R  L+L ++  Y  +P   LA+ G +G +   +    +  + Q S
Sbjct: 70  AELETSATVVTVPDVRMALALVSACFY-DYPSRELAMIGVTGTNGKTTTTYLIDALLQNS 128

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G ++  +G     I      +  TTP    L   L  +  +GVT+ ++E SSH L  HR 
Sbjct: 129 GAATGLLGTVRYHIRGEEFPSLATTPEASELQAILRRMKDEGVTYTTMEVSSHALAWHRT 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLP----KESPAIIYADDAYS 253
            G        TN+  DH+D+HQT   Y  +K +LF  +   P    +   A+I  DD + 
Sbjct: 189 IGCDFDTVVLTNITEDHLDFHQTFDHYLASKSKLFSWQGSFPLKGGRPRRAVINGDDKHW 248

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQ 311
           +     A      V+  G      H++       +  V   +E      +    + G F 
Sbjct: 249 QHF---ADQTPGEVMLYGLS-NHCHVRANDVKVERDAVNFRLETPVGGTEITLKMTGLFS 304

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYN+L A  + +  GID A +   +E +  VPGRFE V    +   + VDYAHT + LE 
Sbjct: 305 VYNSLAAISVGLLEGIDLARIKAVMESVAGVPGRFELVDAG-QNFTVIVDYAHTPDGLEN 363

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+  R     R++ VFGCGGDRD+ KRP+MG+ A   +D  IVT DNPRSEDPEKI  E
Sbjct: 364 VLQAAREFAPARVLTVFGCGGDRDRTKRPLMGEAAGKYSDYCIVTSDNPRSEDPEKIIDE 423

Query: 432 IIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           I+ G+   I+K       +R  AIR A+E+  K DV+++ GKGHET  +
Sbjct: 424 ILPGLENQIDKSAYEIEPDRKAAIRRAMELAQKDDVVIITGKGHETTQV 472


>gi|221213282|ref|ZP_03586257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
 gi|221166734|gb|EED99205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
          Length = 513

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 157/485 (32%), Positives = 243/485 (50%), Gaps = 48/485 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++    Y  +  +AT   N P
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVL----YQPEGLAAT--PNAP 83

Query: 92  I-LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + L V    +     AS  YG   + +LA  VTGT+GK+S   ++      + L++    
Sbjct: 84  VALAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIA-----AALTALHQ- 137

Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           P + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G
Sbjct: 138 PCAIIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                  FTNL +DH+DYH+T +AY  AK +LF     +   A++  DDA  + ++++  
Sbjct: 198 TAFDIAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLA 255

Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQ 311
               RV ++ Y     Q      +++ A+  +   T     +     D D      G F 
Sbjct: 256 G---RVRTIAYGIGDAQQAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFN 312

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369
           V N L   G  +A  +     L  + +L  V GR + +G   +     + +DYAHT ++L
Sbjct: 313 VSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDAL 372

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           E  L  +R I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+
Sbjct: 373 EKTLDALRPIAVARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQ 432

Query: 427 KIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I  +I+ G+    ++  RIE    AI  A+    ++DV+V+AGKGHE    +  G+K+ 
Sbjct: 433 AIIDQIVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRA 490

Query: 483 SVDCD 487
             D D
Sbjct: 491 FSDQD 495


>gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 555

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 235/501 (46%), Gaps = 50/501 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           RE  +  ++ DSR +  G ++ A+ G +  G  F     A+   A V++     +  +AT
Sbjct: 40  REVHVRGITHDSRQVGPGDLYAALPGTRAHGADFA-GQAAEAGAAAVLTDGDGAERAAAT 98

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS------VASFVQQICQR 139
                P++VV + R  L   AS ++    +++L +  T           V S ++    R
Sbjct: 99  ---GLPVIVVPDVRAVLGTAASWVFKDPAQDLLLIGTTGTSGKTTVTYLVESGLRHAGMR 155

Query: 140 SGLSS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +GL      ++G    +SS      LTTP    L    + +  +GV+  ++E SSH L  
Sbjct: 156 TGLVGTVEMRVGDERVVSS------LTTPEATDLHGLFALMRERGVSAAAMEVSSHALAL 209

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKE 255
            R+ G +     FTNL +DH+D+H   + YF+AK RLF    P+    A++ ADD + + 
Sbjct: 210 SRVGGTRYDVAVFTNLSQDHLDFHSDLRDYFDAKARLFT---PEYCDIAVVNADDRFGRA 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFP------- 305
           ++      G   ++      +       A+    +   V +   G  F  + P       
Sbjct: 267 LVDMVQADGRVPVTTFAVDGYTDADPATAMEADWRAVDVRLGAMGSAFRIVGPGGMEANA 326

Query: 306 ---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-----RGGR 357
              LPG F V NA+ A    +  G+     +  +     VPGR E V  N+     +   
Sbjct: 327 SVALPGPFNVSNAMAAIVGLVEAGLPLETAIAGVAAAPGVPGRMEPVVANAVPHAFQDFT 386

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDY+H   ++E +L  +R  T G + +V GCGGDRD+ KRP+MG+ A  L+D  ++T+
Sbjct: 387 ALVDYSHKPGAIEAVLTALRATTEGGLTMVVGCGGDRDRAKRPLMGEAAARLSDQLVITN 446

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DNPR+EDP  I A ++ G+    E+         +R EAIR A+E     DV+VVAGKGH
Sbjct: 447 DNPRTEDPVSIAASMLEGVAKVPEEHRARVTVEFDRAEAIRLAVERARPGDVVVVAGKGH 506

Query: 470 ETVHIVTNGEKKMSVDCDIIR 490
           ET   V  GE     D +++R
Sbjct: 507 ETGQYV-KGEVLPFDDREVLR 526


>gi|145641282|ref|ZP_01796862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|145274119|gb|EDK13985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.4-21]
          Length = 393

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 191/375 (50%), Gaps = 28/375 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKAL 174
           ++ VTGT+GK++++  + Q  +  G  +  +G       F Q  + + TT S + +  +L
Sbjct: 13  LVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSL 71

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G    S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF
Sbjct: 72  STFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLF 131

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            EL       +I ADD    + +    +A    ++V     F    KV +    + + I 
Sbjct: 132 TEL--DTQIKVINADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIH 181

Query: 295 VEGKDFDFLF-----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              K  D  F           PL G F V N L+     ++ G     +L   + L  V 
Sbjct: 182 YHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVC 241

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E +   ++   + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M 
Sbjct: 242 GRMEMIRYPNKP-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMA 300

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQD 460
           ++A   A+  IVT DNPR+E   +I A+I+ G     + G   +R +AI+ AIE   + D
Sbjct: 301 QVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEND 360

Query: 461 VLVVAGKGHETVHIV 475
           V+++AGKGHE   I+
Sbjct: 361 VILIAGKGHEHYQII 375


>gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 486

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/486 (30%), Positives = 228/486 (46%), Gaps = 60/486 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  +A  ++  + G   DGH FI   I +G + IV S           ++     + V
Sbjct: 21  DSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSKPVD------DMKKGVAYIQV 74

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI------CQRSGLSSFQ 146
           +N  + L+  AS  YG HP     +  VTGT+GKS++ S ++ +      C   G  S  
Sbjct: 75  ENVNRTLNRVASMFYG-HPSRKMKVFGVTGTNGKSTITSIIRDVYSHFAPCGYIGTISIS 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +   S      LTTP  + + K +  +   G+  V++E SSHGL+  R+  +    
Sbjct: 134 YGEVTLPPS------LTTPDAVLIHKTMKDMVEHGMQAVALEVSSHGLELGRVQSVDFDV 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             F+NL  DH+D+H T + YF AK +LF   L KE  A++ ADDAY   V + A      
Sbjct: 188 AVFSNLTYDHLDFHGTIEHYFEAKKKLFTN-LKKEGVAVLNADDAY---VDQLADATEAS 243

Query: 267 VLSVG------YQGKFIHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           V++ G      YQ + I ++K  +    +H  ++  +S           L   + +YN L
Sbjct: 244 VVTYGIDNHATYQAENIRIEKTGSRFTLVHGTERYEVSTN---------LVALYNIYNLL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMIL 373
            A       GI     L +L  +  + GR E +      G+++   VD+AHT + +E + 
Sbjct: 295 GAVAAMAESGIPIEQQLPYLHDIRQIEGRMERIDE----GQLFNVIVDFAHTPDGMEKVF 350

Query: 374 KNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +  + IT     II VFG  G RD  KR + G+IA    D  I+T+D+PR EDP +I  E
Sbjct: 351 EYAKDITEDGHSIIAVFGSAGKRDTKKRRVFGEIASRYCDSIILTEDDPRDEDPREIANE 410

Query: 432 IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           I  GI      FI   +R  AIR AIE  N +D +++ GKG E       G +    D +
Sbjct: 411 IKSGISDTNNIFI--ADRYAAIRQAIESANVKDTVLILGKGDEVFMYREFGREPWMGDHN 468

Query: 488 IIREIL 493
           + R  +
Sbjct: 469 VARHCI 474


>gi|83720483|ref|YP_441661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|257137830|ref|ZP_05586092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|83654308|gb|ABC38371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
          Length = 514

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 235/492 (47%), Gaps = 49/492 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +FVA   +  D   FI  A+A+GA A++    Y  + F A       
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++      + L++ +  P
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGT 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH+T  AY  AK +LF         A++  DD   + ++    N
Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLHCAVVNRDDPAGRRLLA---N 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLP---------GE 309
              RV ++ Y    I      A  +++ V  +V     G  F    P           G 
Sbjct: 255 LVGRVRTIAYG---IDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGT 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367
           F V N L   G  +A  +     L  +E+L  V GR + +G   +     + VDYAHT +
Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L+ +R I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+
Sbjct: 372 ALEKTLEALRPIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEE 431

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+KI  +I+ G+          +R  AI  A+    ++DV+++AGKGHE    +  G+K+
Sbjct: 432 PQKIIDQIVAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490

Query: 482 MSVDCDIIREIL 493
              D D  R  L
Sbjct: 491 AFSDQDHARLAL 502


>gi|78212334|ref|YP_381113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9605]
 gi|78196793|gb|ABB34558.1| UDP-N-acetylmuramyl-tripeptide synthetases [Synechococcus sp.
           CC9605]
          Length = 501

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 240/477 (50%), Gaps = 35/477 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++DSR +  G +F+ + G + DG  F  QA+  GA A V+ +  +         ++
Sbjct: 25  LGAITTDSRRVGPGTLFLGLPGERVDGGTFWAQALEAGAAAAVIGAEAAAAQPPG---AD 81

Query: 90  TPILVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++V+     R+   + A+  +  HP   +A+ G +G +   +    I   +  +   +
Sbjct: 82  APVVVIQEPVARRIGEIAAA--FWDHPCRCMALIGVTGTNGKTTTTHLIEHLAASAGQSV 139

Query: 148 GPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T+ +      +T    T     L   L+  +S G    ++E SSH L Q R+ G +
Sbjct: 140 GLFGTLVNRWPGQSITATHTTAFADLLQGQLAEAASAGCGLAAMEVSSHALAQQRVAGCR 199

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAIIYADDAYSKEVMKRAH 261
                FTNL +DH+DYH + + YF AK  LF +  LL   + +++ +DD + + + +R  
Sbjct: 200 FAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGARSVVNSDDPWGERLAERL- 258

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQVYNA 315
            A C   S+      +H+  +      Q     VEG+      +  F  PL G F + N 
Sbjct: 259 GAACWRSSLEDPSAELHMSDL------QMTAAGVEGRLISPVGEGRFRSPLLGRFNLMNL 312

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTSNSLEM 371
           L A G+ +   +   ++LE + +   VPGR E V  N         + VDYAHT + L+ 
Sbjct: 313 LQAIGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAANLPPVLVDYAHTPDGLDN 372

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L   R   +GR+I VFGCGGDRD+GKRP M +IA  LAD  +VT DNPR+EDP +I  +
Sbjct: 373 ALSAARPFCAGRLICVFGCGGDRDRGKRPQMAEIAARLADRVVVTSDNPRTEDPRQILDD 432

Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           ++ GIP     + +G+R +AI +AI      D+++VAGKGHE   I+  G +K+  D
Sbjct: 433 VVAGIPPGSDLLVEGDRAQAIASAIAEAEPNDLVLVAGKGHEDYQIL--GTEKVHFD 487


>gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
 gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
          Length = 477

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/475 (30%), Positives = 225/475 (47%), Gaps = 24/475 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +  + +I  V++DSR I+   +FVAI G + DGH FI +AIA GA  IVV+   +  D  
Sbjct: 17  KNNDDEITNVTNDSRKIEKDGVFVAISGMEFDGHRFIDKAIANGANTIVVTEDVTEIDDI 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             I+     + +      +  F S+        ++ VTGT+GK++ +S +  I +     
Sbjct: 77  NYIKVKDARIALAQISNVVCDFPSKKL-----RVIGVTGTNGKTTTSSMISHILEHLDSP 131

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG   T I     +   TTP    + K L     + + +  VE SSHGL  HRLDGI
Sbjct: 132 CTNIGTNGTFIGGKKYETPNTTPEICEINKILKLSVEEKIDNAVVECSSHGLYLHRLDGI 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   NL  +H+D+H+  + YF+AKM LFE    K    I   DD Y ++   R  +
Sbjct: 192 DFDVAVLNNLSMEHMDFHKNMENYFDAKMILFENAKKK----IANVDDEYGRKAKARFED 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A     S+  +  F   + V  I  K    I    K+  F+      F VYN++ A    
Sbjct: 248 A--YTFSLENESDF-KAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNSVAAIVAV 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G +   + + LE    V  RFEFV  N  G  I +D+AHT  + E I K++      
Sbjct: 301 NLLGYELKDIAKSLESFTGVEARFEFV-KNDMGINIVIDFAHTPKAFENIYKSVP--NDK 357

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----G 438
           R I V+G  GDR    R  +GKI+ +    ++VT D+P+ +  E I  +I+ GI      
Sbjct: 358 RKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSGIEEENGE 417

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++   +R  AI+ AIE+ NK D +++ GKG E    +   EK    + + + E+L
Sbjct: 418 YVRIKDRKSAIKHAIEIANKGDFVLLLGKGQENFIKLKGNEKTPYSEKETVNEVL 472


>gi|302868929|ref|YP_003837566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
 gi|302571788|gb|ADL47990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
          Length = 507

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 199/401 (49%), Gaps = 33/401 (8%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P+LVV + R  L   A+ +YG       ++ VTGT+GK+S +  V+   + +G  + 
Sbjct: 89  TGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRAAGHVTG 148

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T +     D+  TTP    L   L+     GV  V +E SSH L   R+ G++ 
Sbjct: 149 LIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGRVGGVRF 208

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKEVMKR 259
             G +TN G DH+D+H  +  YF AK +LF+     E+L  + PA            ++ 
Sbjct: 209 DVGGYTNFGSDHLDFHADEADYFAAKAKLFDGRCRVEVLNHDDPA------------LRP 256

Query: 260 AHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALV 317
            H  G    S  G          +      Q+ T+   +G        LPG   V NAL+
Sbjct: 257 LHKPGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNSLEMILKN 375
           A  L +A+G+D       +     VPGR E V  ++  RG    VDYAH +N++E +L  
Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELVSGDAPVRG---VVDYAHKANAIEAVLIA 373

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R +T GR+I V G GGDRD+GKRP+MG +A   AD+ +VTDDNPR+EDP  IRAE++ G
Sbjct: 374 LRDLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAG 433

Query: 436 IPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                     IE   R  AI  A+ +    DV+ V GKG E
Sbjct: 434 AYAAATPARVIEVPGRRAAIEEAVRVAEPGDVVAVLGKGQE 474


>gi|260434604|ref|ZP_05788574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
 gi|260412478|gb|EEX05774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
          Length = 497

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 143/477 (29%), Positives = 231/477 (48%), Gaps = 35/477 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++DSR +  G +F+ + G + DG  F              +   +    +    ++
Sbjct: 21  LEAITTDSRRVGPGTLFLGLPGERVDGGSFW---AQALEAGAAAAVIGAAAAAAKPPAAD 77

Query: 90  TPILVVDNT--RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++V+  +  R+   L A+  Y  HP   + + G +G +   +    I   +  +   +
Sbjct: 78  DPVVVIQESVARRIGELSAA--YWDHPCRRMVLIGVTGTNGKTTTTHLIEHLAASTGQSV 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T+ +    + +T       A      L+  +S G    ++E SSH L Q R+ G +
Sbjct: 136 GLFGTLVNRWPGHSITATHTTAFADRLQGQLAEAASAGCCLAAMEVSSHALAQQRVAGCR 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAIIYADDAYSKEVMKRAH 261
                FTNL +DH+DYH + + YF AK  LF +  LL     +++ +DD +   + +R  
Sbjct: 196 FAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGVRSVVNSDDPWGARLAERL- 254

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQVYNA 315
            A C   S+      +H+  +      Q     VEG+      +  F  PL G F + N 
Sbjct: 255 GAACWRSSLEDPSAELHMSDL------QMTAAGVEGRLISPAGEGRFRSPLLGRFNLMNL 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNSLEM 371
           L A G+ +   +   ++LE + +   VPGR E V  N         + VDYAHT + L+ 
Sbjct: 309 LQAVGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAVNLPPVLVDYAHTPDGLDN 368

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L   R   +GR+I VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+EDP++I  +
Sbjct: 369 ALSAARPFCTGRLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTEDPQRILDD 428

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           ++ GIP     + +G+R +AI +AI      D+++VAGKGHE   I+  G +K+  D
Sbjct: 429 VVAGIPAGSDLLVEGDRAKAIASAIAEAEPDDLVLVAGKGHEDYQIL--GTEKVHFD 483


>gi|312196217|ref|YP_004016278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
 gi|311227553|gb|ADP80408.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
          Length = 522

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 235/464 (50%), Gaps = 41/464 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +Q G ++ A+ G+   G  F   A A GA A++   A +    + ++  +
Sbjct: 44  LHGVTHDSRAVQPGDLYAALPGSHAHGADFAAAAAASGAAAVLTDPAGAAA-LAGSV--D 100

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++   + R  ++  A  LYG+   ++  L VTGT+GK++ A  V    + +G  +  +
Sbjct: 101 LPVVTTADPRSDVAQVADWLYGQPSRSLTLLGVTGTNGKTTSAFLVDAGLRAAGHRTGLL 160

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T I+    D+  TTP    L    + +  +GVT  ++E SSH L QHR+DG++   
Sbjct: 161 GTVETRIADERVDSVRTTPESSDLQALFAVMVERGVTAATMEVSSHALAQHRVDGLRFAG 220

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+DYH T + YF AK RLFE   P+ + A +         +   A   G  
Sbjct: 221 ALFTNLSQDHLDYHPTMRDYFEAKARLFE---PERTAASVIG-------IEPGAGTWGLE 270

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNAL 316
            L+    G   +     A      +T+   G  F    P          LPG F V NAL
Sbjct: 271 -LAARVPGSVTYAPDPPADWWADDLTVGARGSSFTARGPRGLAVPMEVRLPGRFNVANAL 329

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMIL 373
            A  L +A GI+       +  L  VPGR E +      G+ Y   VD+AHT +++E +L
Sbjct: 330 GALALLVAAGIEPRAAAAGIGTLAGVPGRMEPI----EAGQPYLALVDFAHTPDAVETVL 385

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++R +  GR+IVV GCGGDRD+ KRP+MG  A  LAD+A +T+DNPRSEDP +I A++ 
Sbjct: 386 TSVRGLVDGRVIVVLGCGGDRDRAKRPLMGAAAARLADLAFLTNDNPRSEDPAEILAQMT 445

Query: 434 HGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKGHE 470
            GI        ++  I         A+      DV+VVAGKGHE
Sbjct: 446 AGIDRVATSAAKVTVIPDRAEAIAAAVAEAGPGDVVVVAGKGHE 489


>gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 514

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 155/517 (29%), Positives = 238/517 (46%), Gaps = 39/517 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K F EL+  ++          I+ V+ DSR +  G +FVAI G   DGH +I  A+ QGA
Sbjct: 2   KSFAELLLHVTHQASGDHHVAISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A+V    +  Q   ATI    P  +V + +  LS  A+  Y  +P   L V G +G   
Sbjct: 62  VAVVYDDPH--QAPPATI----PSALVADAKVALSPIAAAFY-DYPAQQLEVVGITGSKG 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGV 182
             +           S   +G  ST+        +A   R +TP  + +   L  +   G 
Sbjct: 115 KTTTTFLTAAALEASGELVGFMSTVDFKIGQRQWANKTRQSTPEALEIQAMLREMVEAGC 174

Query: 183 THVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--- 237
            +  VE++SHGL    +RL          TN+  +H+DYH T + Y   K +LF+ L   
Sbjct: 175 RYAVVESTSHGLSPRWNRLGDCAYDVALITNVTHEHLDYHGTVEQYRADKAQLFQLLATS 234

Query: 238 ----------LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIH 286
                      P E  AI+ ADD ++ +  + A     R LS     +  +   ++ +  
Sbjct: 235 PSQKSILGQPTPVEKVAIVNADDPHAAQ-FRAAAGEQVRHLSYAIHAEADLRATEIVSTS 293

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              + T      +F     L G F VYN L A  +C+A G+D A  ++ LE +  + GR 
Sbjct: 294 KGLRFTAITPQGNFALNLQLVGTFYVYNVLAALSVCLARGVDLAAAIQRLEAIPGINGRM 353

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V    +   + VDYAH  +S E ++  +R +T GR+I VFG  G+RD  KRPI G+IA
Sbjct: 354 EQVELG-QPFSVLVDYAHNPDSFEQVMSMLRPLTQGRLIAVFGSAGERDLAKRPIQGQIA 412

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG-----NRIEAIRTAIEMLNK 458
               D+  +TD++PR+ED  +I  EI  G       I++      +R  AI  A+     
Sbjct: 413 AKWCDLLYLTDEDPRAEDSLQILQEIAAGAKAEGKIIDQNCWLIPDRRTAIEQALATAQA 472

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            DV+++ GKGHE   I  +G+ + +   +  R + GL
Sbjct: 473 GDVVLLLGKGHEGNIIYASGDIEWNEHAEAERALQGL 509


>gi|126435850|ref|YP_001071541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. JLS]
 gi|126235650|gb|ABN99050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mycobacterium sp. JLS]
          Length = 508

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 150/398 (37%), Positives = 206/398 (51%), Gaps = 26/398 (6%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQI 147
           P+LV  + R  L   AS +YG HP   L V G +G S   +    V+   + +G  +  I
Sbjct: 95  PVLVHPDPRAVLGAVASTVYG-HPSQHLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLI 153

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I    Q + LTTP    L   L+ +  QGV  V +E SSH L   R+DG+   A
Sbjct: 154 GTVGIRIDGRDQPSALTTPEAPDLQALLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAA 213

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           G FTNL RDH+D+H T + YF+AK  LF+ +   +   A++  DD   + +  RA     
Sbjct: 214 GGFTNLSRDHLDFHPTMEDYFDAKAGLFDPQSRTRAELAVVCVDDDAGRAMAIRA----G 269

Query: 266 RVLSVGYQGKFIHLK--KVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGL 321
           R ++V   G+    +   V A+    Q  ++V+  G        LPG + V N L+AA L
Sbjct: 270 RAVTVSASGRPADWRAEDVRAVEAGAQEFVAVDPAGVHHGLRIALPGHYNVANCLLAAAL 329

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTI 379
             A+ +        L +   VPGR E V    RG      VDYAH   +L  +L+ +R  
Sbjct: 330 LDAVDVSPEQAAPGL-RTATVPGRLEAV---DRGQDFLALVDYAHKPGALRAVLETLRGQ 385

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
            +GRI VVFG GG+RD GKR  MG++A +LAD+ +VTDDNPR EDP  IRA I+ G    
Sbjct: 386 GTGRIAVVFGAGGNRDAGKREPMGRVAAELADLVVVTDDNPRDEDPATIRAAIMAGARAA 445

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 +E G+R EAI  A+      DV++VAGKGHET
Sbjct: 446 GGGADVVEVGDRREAIAHAVRWARSGDVVLVAGKGHET 483


>gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
 gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
          Length = 506

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 151/484 (31%), Positives = 234/484 (48%), Gaps = 32/484 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR+I+ G  F+ I G++ DGHLF+  A   GA   + S    + D +  I   
Sbjct: 38  IKYISEDSRNIKEGTAFICIEGSRVDGHLFVEGAKKNGAGLFIASK--DIADKAGDI--- 92

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++ V +T K ++L ++ LYGK  E +  V  TGT+GK++ +  +  I +   L +  I
Sbjct: 93  -PVVYVKDTLKVMALLSNVLYGKPDEKLFMVGITGTNGKTTTSYLINHIFETMNLKTGLI 151

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I       + TTP    L   L  ++++      +E SSH L   R+ G     
Sbjct: 152 GTIHHKIGKKIIPTKNTTPVSATLQGLLEEMAAEKCDACVMEVSSHALALDRVIGCDFDC 211

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAH 261
             FTNL  +H+D H+T   Y + K  LF +L       K   A++  DD YS+E   +AH
Sbjct: 212 AVFTNLSHEHLDLHKTMGNYAHTKELLFTQLGHNLKNGKLKTAVLNIDDKYSEEY--KAH 269

Query: 262 NAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                V++ G   K    +  K+     K +  +   G  +     L G F VYN L A 
Sbjct: 270 TPA-EVITYGIDDKTADFYADKIFFDDWKMRFDLHFLGDVYKVETNLVGLFNVYNVLAAI 328

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A GI     +E L+    V GR E V T+ +  +I +D+AHT + L  +L+ +  +
Sbjct: 329 CTAFAKGIAVRDAIEALKSFSGVSGRMETVHTD-KNYKIIIDFAHTPDGLMKVLETLNKV 387

Query: 380 TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              RII + G  GG+RD   RP +G+IAL+ +D  + T DNPR+E  E     I+ G+  
Sbjct: 388 PHNRIITLIGHSGGNRDSSMRPDLGRIALENSDEVVFTADNPRNESVE----HIVEGLVS 443

Query: 439 FIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              K N      R EAI  A  +  + D++++AGKG E   ++ +     S + + ++EI
Sbjct: 444 DCAKTNYTVIEDRKEAIEYAFGIAGENDIVLLAGKGAEPYQVIGDEYLPYS-EIETVKEI 502

Query: 493 LGLI 496
           LG I
Sbjct: 503 LGRI 506


>gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate
           ligase [Streptomyces venezuelae ATCC 10712]
          Length = 565

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 155/482 (32%), Positives = 239/482 (49%), Gaps = 42/482 (8%)

Query: 13  ELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L  QL +  P   R  +I+ ++ DSR ++ G ++ A+ G +  G  F+    A    A 
Sbjct: 58  DLAAQLGVDVPDAPRPTEISGITHDSRAVRPGDVYAALPGARAHGADFV-AQAAGLGAAA 116

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSV 129
           +++     +  +AT     P+LVV+N R  +   A+ +YG+   ++L   +TGTSGK++ 
Sbjct: 117 ILTDPTGAERAAAT---GLPVLVVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTT 173

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185
           A  V+   + +G  +  +G   T+     D R+    TTP    L    + +  +GV  V
Sbjct: 174 AYLVEGGLRGTGHHTGLVG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAV 230

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-A 244
           ++E SSH L   R+DG       F NL  +H+++H   + YF AK  LF    P+ S   
Sbjct: 231 AMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSDMEDYFQAKAGLF---TPERSRLG 287

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVEGKDF 300
           ++  DDAY + ++  A      VL+   +G+    +     V   H+     +   G+  
Sbjct: 288 VVNLDDAYGRRLVGEAT---VPVLTFSAEGRADADWRAEDLVLGSHDSTFTAVGPGGERI 344

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY- 359
               PLPG F V N L A     A G+D     E +  +  VPGR E V      G+ Y 
Sbjct: 345 SATAPLPGPFNVANTLAAIATLAAAGLDPKAAAEGVAAVPGVPGRLERV----EAGQPYL 400

Query: 360 --VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T 
Sbjct: 401 AVVDYAHKTDAVESVLRSLREVTEGRLHVVIGCGGDRDTTKRGPMGAAAARLADTAVLTS 460

Query: 418 DNPRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKG 468
           DNPRSEDP  I   ++ G   +P   E+G  +       AI  A+      D ++VAGKG
Sbjct: 461 DNPRSEDPLTILTAMLAGAAEVPAE-ERGEVLVLADRAAAIAAAVARARPGDTVLVAGKG 519

Query: 469 HE 470
           HE
Sbjct: 520 HE 521


>gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
          Length = 497

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 154/490 (31%), Positives = 234/490 (47%), Gaps = 45/490 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+ KD   + N   I   Q  + +I+++  DSR      IFVAI G   DGH +I
Sbjct: 1   MKLKDLL-KDIEYISN---IKESQLEDIEISDIVYDSRKAVKDSIFVAIKGETVDGHDYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A  +G+   +++    ++D +  I       +V ++R+ LS  ++  + +  +   ++
Sbjct: 57  KGAYDKGSRVFIINHDLEIEDDAIKI-------IVPDSRRVLSRMSAIFFSEPTKKLKVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++++++++ +  +SG+++  IG      +  A+    TTP    L K +  +
Sbjct: 110 GITGTKGKTTISNYIKTVLTKSGMNTGVIGTNGVFYNDVAEKTLNTTPESYELQKTIKEM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
              GV  V++E SS GL   R+D I    G +TNL  DHI    H T + Y   K RLF 
Sbjct: 170 LDAGVECVAMEVSSSGLMMGRVDDIDFDIGVYTNLSPDHIGPKEHPTFEHYRECKSRLFG 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L K    II  DD  ++ ++  A    C        G  I  +      N +    S 
Sbjct: 230 --LCK--YGIINVDDENAQYMVDHAKCPTC--------GFSIDKESNIKAGNIELTRSSA 277

Query: 296 E-GKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             G DFD+              PGEF +YNAL   G+C   GID   +LE L    V  G
Sbjct: 278 SLGVDFDYKLKDQDTVRTHICSPGEFSIYNALAVIGVCDHFGIDRDKMLEALSDAKV-DG 336

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +        + +DYAH   SLE +L  +      R+I V+G  G R   +R  +G 
Sbjct: 337 RVEVIPVLDNA-TVILDYAHNGLSLENVLDTLLKYDHNRMICVYGSIGGRAAIRRKELGD 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQD 460
           +A  L D++I+T DNP  EDP KI  EI     G   +     +R EAI  A+EM    D
Sbjct: 396 VAARLCDVSIITTDNPDDEDPMKIIDEIAESYVGSDSEVHKVVDRAEAIYKALEMAEDGD 455

Query: 461 VLVVAGKGHE 470
           +++V GKGHE
Sbjct: 456 MVLVTGKGHE 465


>gi|88809251|ref|ZP_01124760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
 gi|88787193|gb|EAR18351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
          Length = 499

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 150/469 (31%), Positives = 227/469 (48%), Gaps = 29/469 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR +  G +F+ + G + DG  F PQA+A GA A+++    +     A    +
Sbjct: 22  VTSLTCDSRCVGKGSLFIGLPGERVDGGSFWPQALAAGAAAVLIGEQAAASHPPAF--GD 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146
             +++ D    +    AS  + + P   L + G +G +   +    ++ + Q  G  +  
Sbjct: 80  AVLVLPDPVSVWAGELASAFW-QQPSTRLGLIGVTGTNGKTTTTHLIEHLSQACGQPAAL 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ----GVTHVSVEASSHGLDQHRLDGI 202
            G   T+ +    + LT      +A  L    ++    G    ++E SSH LDQHR+ G 
Sbjct: 139 FG---TLVNRWPGHSLTATHTTSVADRLQAQLAEALEAGTQMAAMEVSSHALDQHRVAGC 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESP-AIIYADDAYSKEVMKRA 260
           +     FTNL +DH+DYH + +AYF AK RLF    L  E P A++  DD + +++  R 
Sbjct: 196 RFSGAVFTNLTQDHLDYHPSMEAYFEAKSRLFASPYLVGEGPRAVVNTDDPWGRQLADRL 255

Query: 261 HNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               C   S+          L+   A  +   VT   EG+   F  PL G F + N + A
Sbjct: 256 GER-CWSSSLETHADLTMGDLRMTSAGVDGLLVTPLGEGR---FHSPLVGRFNLMNLMQA 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMIL 373
            G  +  G+   L+L  +     VPGR E V             + VDYAHT + L   L
Sbjct: 312 VGALLQQGLPLGLLLASIPSFRGVPGRMERVVVKGSAMIDEHPSVIVDYAHTPDGLRNAL 371

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
              R  T GR++ +FGCGGDRD+GKRP M  IA  LAD  ++T DNPR+E+P +I  +I+
Sbjct: 372 LASRPFTKGRLVCLFGCGGDRDRGKRPQMASIAASLADRVVITSDNPRTENPNQILEDIV 431

Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            G+P   E     NR  AI  AI      D+L++AGKGHE   I+  G+
Sbjct: 432 VGLPTGTEFSVDVNRSTAIANAIREARPDDLLLIAGKGHEDYQILDIGK 480


>gi|25028614|ref|NP_738668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|30316046|sp|Q8FNT5|MURE_COREF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23493900|dbj|BAC18868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 526

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 228/465 (49%), Gaps = 23/465 (4%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLS 103
           IF A+ G+++ G  F     A GA A++      ++ D     R   P L+VD+ R+ L 
Sbjct: 59  IFAAVPGSRKHGAEFADTDRAAGALAVLTDRDGATILDRKGDTR---PRLIVDDVREVLG 115

Query: 104 LFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDN 160
           + +S +YG    ++  + VTGTSGK++ +  +++    +G     IG T T I       
Sbjct: 116 VASSSVYGDPSRDLVLIGVTGTSGKTTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPT 175

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           +LTTP    L K    +   GVTHV +E SSH L   R+ G      +FTNL +DH+D+H
Sbjct: 176 KLTTPEAPTLQKLFYRMRQHGVTHVVMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFH 235

Query: 221 QTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            T + YF+AK   F    P  +   ++  DD +   + + A NA   V + G +  F   
Sbjct: 236 DTMEEYFDAKALFFRAGSPLAADHQVVCIDDEWGTRMAEVAGNAQT-VATTGKRADFTAG 294

Query: 280 KKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                   +Q  T++V +  +      LPG F V NA +A    +  G+D       + +
Sbjct: 295 LVTVKETGEQSFTVTVPDHGEVPVTLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ 354

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           +  VPGR E +    +     VDYAH   ++  +L  +RT   GR+ VV G GGDRD  K
Sbjct: 355 V-AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATK 412

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK---------GNRIEA 448
           R  MG+++   AD+ IVTDDNPRSE P  IRA ++ G   G  E          G+R EA
Sbjct: 413 RAPMGELSARRADLVIVTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEA 472

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           IR  IE     D +VVAGKGHE   ++  G      D + +RE L
Sbjct: 473 IRALIEWAGPGDGIVVAGKGHEVGQLIA-GVTHHFDDREQVREAL 516


>gi|291520211|emb|CBK75432.1| UDP-N-acetylmuramyl-tripeptide synthetases [Butyrivibrio
           fibrisolvens 16/4]
          Length = 490

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 229/461 (49%), Gaps = 37/461 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I+ +  DSR ++   +FV I G   D H FIP  I +GA AI++       D    I
Sbjct: 20  DKEISTLVYDSRKVEKDSVFVCISGTVRDAHDFIPDVIEKGATAIIIEKDVEPVDGITYI 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           +       V N+R+ L++ ++  +G HP   L   G +G     +    V+ I +++G+ 
Sbjct: 80  K-------VANSRQALAILSAAYFG-HPAKELKTIGITGTKGKTTTTYMVKSILEKAGIK 131

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  IG   TI S   + R+    TTP    + +    +   G+  V +E SS  L  HR+
Sbjct: 132 TGLIG---TIESIVGEERIPAVNTTPESYRVQELFRQMVDAGLDAVVMEVSSQALMLHRV 188

Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            G     G FTNL  DHI  + H+  + Y + K  LF++         I+  D+   E +
Sbjct: 189 SGFTFDIGVFTNLEPDHIGENEHKDFEDYMHCKSLLFQQ-----CKVGIFNGDSEHIEGI 243

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGK-DFDFLFPLPGEFQVY 313
            + H   C V+  GY      + +   + N+     V   + GK D      +PG F VY
Sbjct: 244 LKGHT--CDVIKYGYGKDNDLIAENVELLNENGALGVRYHITGKEDMTVEVNVPGTFSVY 301

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L A  +C    +    +   L  +HV  GR E V  +S+   + +DYAH + +LE +L
Sbjct: 302 NSLTAVAICKQFNVAEDKIKSALMNVHV-KGRIELVPVSSKF-TVMIDYAHNAMALESLL 359

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             ++    GR++ +FGCGG+R + +R  MG+++  LAD+ +VT DNPR+E+P  I  +I+
Sbjct: 360 TTLKAYEPGRLVCLFGCGGNRAKSRRYEMGEVSSKLADLTVVTSDNPRNEEPMDIINDIL 419

Query: 434 HGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            G+      ++   +R EAIR  +    + D++V+AGKGHE
Sbjct: 420 IGVKKADGEYVTVPDRKEAIRYCLTNAKEGDIIVLAGKGHE 460


>gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 504

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 149/484 (30%), Positives = 237/484 (48%), Gaps = 30/484 (6%)

Query: 1   MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +KL++L+Y   P E++  +          +I  +S DSR +  G +F A  G K DGH +
Sbjct: 12  VKLKNLLYALEPLEVVGSVDC--------EITSISYDSRKVSEGSMFFAWKGQKTDGHCY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I +AI + A AIV S    L      +      L V + R+ L   AS  YG   +  ++
Sbjct: 64  IGEAIEKRARAIVCSEIPRLY-----VSQAVTFLKVRDPRRTLGKAASLYYGNPSQHLSL 118

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKALS 175
           + VTGT+GK++ +   + + ++    +  IG     T  S    +R T P    L   L 
Sbjct: 119 VGVTGTNGKTTTSFLTRYLLEKQNWKAGLIGTVCYDTTESCIPSSR-TCPEGSDLQYMLY 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G     VE SSH LDQ R++G     G +TN  +DH+DYH T + Y  +K     
Sbjct: 178 RMVQAGCRAAVVEVSSHALDQGRIEGSNFRVGIYTNFTQDHLDYHLTMEEYRRSKENFIA 237

Query: 236 ELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--- 289
            +      +   ++  DD   + + ++      R+++V  +G+     K  +I   +   
Sbjct: 238 YIRGGKEGDGGVVLNLDDPQWRLLAEKLRKK-MRIVTVSSEGRKEADLKAGSISCDRFST 296

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  +   GK F     L G F V NAL++ G  + +GI     +  LE    VPGR E  
Sbjct: 297 KFVLEWAGKVFKVKSSLLGYFNVDNALLSLGGVLLLGIPLEQSISFLEFFPGVPGRMEKY 356

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +   G  + +DYAH+ ++L  +L  ++     R+I+V GCGGDRD+ KRP M K+A + 
Sbjct: 357 YSKD-GLLVVIDYAHSEDALSKLLHTLKCFQPKRLILVVGCGGDRDRLKRPRMAKVASEN 415

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAG 466
           ADI   T DNPRSE PE+I  ++  G+    +     +R EAI+ A+ + +  D++ +AG
Sbjct: 416 ADIVFFTSDNPRSESPERIFDDMRAGVEESKKLHWIIDREEAIKQALCLADSTDIVCIAG 475

Query: 467 KGHE 470
           KGHE
Sbjct: 476 KGHE 479


>gi|259507672|ref|ZP_05750572.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|259164719|gb|EEW49273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 509

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 228/465 (49%), Gaps = 23/465 (4%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLS 103
           IF A+ G+++ G  F     A GA A++      ++ D     R   P L+VD+ R+ L 
Sbjct: 42  IFAAVPGSRKHGAEFADTDRAAGALAVLTDRDGATILDRKGDTR---PRLIVDDVREVLG 98

Query: 104 LFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDN 160
           + +S +YG    ++  + VTGTSGK++ +  +++    +G     IG T T I       
Sbjct: 99  VASSSVYGDPSRDLVLIGVTGTSGKTTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPT 158

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           +LTTP    L K    +   GVTHV +E SSH L   R+ G      +FTNL +DH+D+H
Sbjct: 159 KLTTPEAPTLQKLFYRMRQHGVTHVVMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFH 218

Query: 221 QTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            T + YF+AK   F    P  +   ++  DD +   + + A NA   V + G +  F   
Sbjct: 219 DTMEEYFDAKALFFRAGSPLAADHQVVCIDDEWGTRMAEVAGNAQT-VATTGKRADFTAG 277

Query: 280 KKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                   +Q  T++V +  +      LPG F V NA +A    +  G+D       + +
Sbjct: 278 LVTVKETGEQSFTVTVPDHGEVPVTLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ 337

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           +  VPGR E +    +     VDYAH   ++  +L  +RT   GR+ VV G GGDRD  K
Sbjct: 338 V-AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATK 395

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK---------GNRIEA 448
           R  MG+++   AD+ IVTDDNPRSE P  IRA ++ G   G  E          G+R EA
Sbjct: 396 RAPMGELSARRADLVIVTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEA 455

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           IR  IE     D +VVAGKGHE   ++  G      D + +RE L
Sbjct: 456 IRALIEWAGPGDGIVVAGKGHEVGQLIA-GVTHHFDDREQVREAL 499


>gi|73542668|ref|YP_297188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
 gi|72120081|gb|AAZ62344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
          Length = 520

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 159/501 (31%), Positives = 231/501 (46%), Gaps = 36/501 (7%)

Query: 23  MQWRERKI---NEVSSDSRHIQAGWIFVA-IVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           + W   K+     ++ D+R +  G +F+A ++GN+       P        A   +  Y 
Sbjct: 19  LAWLRTKVPASARLTGDTRRLARGDVFLAYVLGNERLSTDGRPHIAQA-IAAGAGAILYE 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQ 135
              F  T     P L +++  +     A+  YG +P   +AVTG   T+GK+S + ++ +
Sbjct: 78  ADGFDWTFGDTVPHLALNSLHQLAGPIAAGWYG-NPARGVAVTGMTGTNGKTSCSQWLAR 136

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + Q +G     IG   T      Q    TTP  + L  +L+ L   G   V++E SSHGL
Sbjct: 137 LLQATGTPCATIGTLGTGFPDALQPTGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGL 196

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q R+ G        TNL +DH+DYH T   Y  AK RLF         A+I  DD   +
Sbjct: 197 EQERVAGTHFSVAVLTNLTQDHLDYHGTMAEYEAAKARLFR--WDGLRTAVINRDDGMGR 254

Query: 255 E-------------VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                         V++   +   R    G +G+++    V A        I       D
Sbjct: 255 RLLASNGAAIAAPHVIEYGIDGPARASISGARGQWLRASGVRATATGTAFHIDGSFGSAD 314

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIY 359
              P+ G F V N L   G  +A G+     L  L  L  V GR E  G ++   G    
Sbjct: 315 VATPMIGAFNVSNLLAVLGAALANGVAWDAALAALRALSPVDGRMELFGAHAGQDGPLAV 374

Query: 360 VDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           VDYAHT ++LE  L+ +R +    +GR+  VFGCGGDRD  KRP+MG +A  LAD  ++T
Sbjct: 375 VDYAHTPDALEKTLEALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGGVAERLADEIVLT 434

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSEDP+ I   I  G+     +G +IE    AI  AI+     DV++VAGKGHE  
Sbjct: 435 SDNPRSEDPQDILDAIADGMADRA-RGRQIEDRAAAILYAIKHAAGADVVLVAGKGHEAT 493

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
               +G K+   D + +R  L
Sbjct: 494 Q-EAHGRKRPFSDREHVRLAL 513


>gi|198282530|ref|YP_002218851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667953|ref|YP_002424720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247051|gb|ACH82644.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520166|gb|ACK80752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 483

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 231/473 (48%), Gaps = 29/473 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R ++ G ++V +     DG  F+ QA A GA A ++ S+    D       + P+
Sbjct: 26  IETDTRRLRPGMLYVGLNTRHGDGQQFLQQAWAAGAAAALLESS----DEDVHGGQDHPV 81

Query: 93  LVVDNTRKFLSLFASRLY----GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                 R  L +   R Y    G  P  I+ VTGT+GKSSV   + ++  +  +    +G
Sbjct: 82  WQSPKARTLLGMALRRWYRWDEGLAPV-IVGVTGTNGKSSVTRLIAELAPQPAMIIGTLG 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                +  +Q N  TTP P+ L + ++ L  QG   +++E SSH L   R+  +   A  
Sbjct: 141 HGRVDALISQAN--TTPDPVPLWQTMATLRDQGAKVIAMEVSSHALALERVAAVPFAAAV 198

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+D+H     Y  +K RLF+   P    A++  DDA++ ++   A     R L
Sbjct: 199 FTNLSRDHLDFHGDMARYGASKTRLFQT--PGLRLAVLNGDDAFTGQIAA-AMAPEVRQL 255

Query: 269 SVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             G     YQ   +H      +     + +           PL G   V N L A  L  
Sbjct: 256 RFGVGSGDYQAVALHPGASGTL-----LDLRTPAGSRRIRSPLIGNSNVQNLLAA--LAT 308

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+   +    +  L +  GR++ +       ++ +DYAHT ++L  +L ++R +  G 
Sbjct: 309 AEGMGWPVSDAAIAGLDLPEGRYQRLAPVPGKAQVMIDYAHTPDALRRVLTDLREVAKGA 368

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441
           + VVFGCGGDRD+GKRP MG+IA  LAD  I+TDDNPRSE PE I  +I+ G+  PG   
Sbjct: 369 VTVVFGCGGDRDRGKRPEMGRIAERLADHVILTDDNPRSEAPEAIADDILGGMEQPGQAT 428

Query: 442 K-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R  AIR AI      D +++AGKGHE    +    + +  D D+  E L
Sbjct: 429 VIHDRAAAIRAAIAASRAGDWVLIAGKGHERTQEIMGQRQPVPQDRDVATEAL 481


>gi|330836875|ref|YP_004411516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
 gi|329748778|gb|AEC02134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
          Length = 535

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 156/506 (30%), Positives = 239/506 (47%), Gaps = 51/506 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           FP+   + +I  +  DSR    G I+ A  G  EDG  F+  A+ +GA A+V        
Sbjct: 29  FPLP--DIEITSIRHDSRVCDQGSIYCAFRGLHEDGIDFMDNALEKGAAAVVTDR----- 81

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138
              +      P +VV+  R+  +L     +G       ++ VTGT GKS+   ++ Q+ +
Sbjct: 82  -LPSRPHEGVPYIVVEAPRQAYALLCGSFFGNPASALKVIGVTGTDGKSTTIEYLWQLLR 140

Query: 139 RSGLSSFQIGPTSTISS------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             G+   + G  ST+S        +   R +TP    L   LS     G++ V +E +SH
Sbjct: 141 GQGV---RAGLLSTVSWDDGSGLVSSPYRQSTPEAWELHSFLSSCRDHGLSIVILETTSH 197

Query: 193 GLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            L     RL GI      +T +  +H+++H + + Y +AK+ L   LLP  SP +I  D+
Sbjct: 198 ALSMEYDRLAGIAFSGAIYTTMTSEHLEFHGSLERYVDAKLNLARRLLPG-SPLVIPHDN 256

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDFL-- 303
           A   ++MK A  A   + +V +       +K   I N   ++ +V G +     F F   
Sbjct: 257 ARKDDIMKAAPQAKPFITAVHHGKSSGCSRKEDGILNGTCISATVLGMEPEQLAFTFAIN 316

Query: 304 ---------FPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    FP P  F + NAL AA +  + I I    ++   EKL  V GR   V  NS
Sbjct: 317 DKELTTLWRFPSPFPFLLSNALEAAAMAHSLIDIPLEAIIAQFEKLSPVRGRAIPV-PNS 375

Query: 354 RGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  + +D+AHT+++   +++ I R      I VVFG  G+RD  KR  MG  A      
Sbjct: 376 LGVTVLIDFAHTADAFAHVMEEISRVHPKADITVVFGAAGERDTTKRAPMGAQAARWCSR 435

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-------GNRIEAIRTAIEMLNKQDVLVVA 465
            I+TD++PR+E  E IR +I  GIP  +++        +R  AIR A+  LN+ DVL++ 
Sbjct: 436 IIITDEDPRNEGYEAIRKDIEAGIPDALKRRRTILRIADRKRAIREAVANLNRGDVLLLL 495

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE 491
           GKGHET     NG K   +  D +RE
Sbjct: 496 GKGHETTIEYENGRK---IPWDEMRE 518


>gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 539

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 141/466 (30%), Positives = 219/466 (46%), Gaps = 39/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+  S   + GWIFVAI G  + G  F   AI  GA  I+       + F    R  
Sbjct: 58  VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLILTDEVGRREAFER--RLG 115

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ-ICQR------S 140
            P++ V N R  + L    +Y      +  +AVTGT+GK++ +  ++  +  R       
Sbjct: 116 VPVVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLC 175

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G     +GP S      +  R T  +P+   +LA    Y     V    +E S+H L  +
Sbjct: 176 GTVETSVGPVSF-----EAVRTTAEAPVVARFLAATDQYHCGAAV----IELSAHALSLN 226

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEV 256
           R+DGI     +FTNL  DH+DY+   + YF AK  LF    P+ S   ++  DD + + +
Sbjct: 227 RVDGIVFDVAAFTNLQHDHLDYYGDMETYFAAKALLF---TPEHSRRGVVCVDDEWGRRL 283

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              A      V ++ ++     ++ V    +I       +S +G       P+ G+  V 
Sbjct: 284 ADHATVPVTTVSALTHEAADWQVRNVTPDKSIGRTVFTLVSPDGSPHRVAMPILGDVNVQ 343

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSNSLEMI 372
           N  VA    +++G+     +  +E    +PGR E V  T      + VDYAHT  +LE  
Sbjct: 344 NTAVAIVSAVSLGVSLEDAISSVENAPQIPGRMEKVNPTPGAQPLVIVDYAHTPEALEWT 403

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L++ R +T+GR+++VFG  GDRD  KR  +  IA   AD+  VTD+NPRSEDP+ IR  +
Sbjct: 404 LRSTRELTAGRVVIVFGTDGDRDASKREELAAIAAREADVLWVTDENPRSEDPQSIRDYL 463

Query: 433 IHGI----PGFIE----KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           + GI    P   +       R +A+R AI      D +++ GKG E
Sbjct: 464 LRGIASARPDMHDVHEVTTCRRDAVRQAILDARAADTVIITGKGAE 509


>gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 506

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 160/482 (33%), Positives = 244/482 (50%), Gaps = 45/482 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL +QL   P Q +  ++  ++ DSR ++ G ++ A+ G +  G  F+ QA+  GA A V
Sbjct: 19  ELADQLGAEPPQ-KAAQVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAVA-V 76

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130
           ++     +  +AT     P+LVV++ R  +   A+ +YG    ++L   +TGTSGK++ A
Sbjct: 77  LTDPTGAERAAAT---GLPVLVVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTTTA 133

Query: 131 SFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185
             V+      GL   +  G   T+     D R+    TTP    L    + +  +GV  V
Sbjct: 134 YLVE-----GGLKGVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAV 188

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-A 244
           ++E SSH L   R+DG     G FTNL  +H+++H   + YF AK +LF    P+ S   
Sbjct: 189 AMEVSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLF---TPERSRLG 245

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFL 303
           ++  DD Y + ++K A      V++   +G      +   +       T +V G   + +
Sbjct: 246 VVNLDDEYGRRLVKEAT---VPVVTFSAEGHPDADWRAADVEVGPMDSTFTVIGPKDERI 302

Query: 304 F---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY- 359
               PLPG F V N L A     A G+D     + +  +  VPGR E V      G+ Y 
Sbjct: 303 SARSPLPGPFNVANTLAAIVALAAAGLDPQTAADGVAAVPGVPGRLERVDA----GQPYL 358

Query: 360 --VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH ++++E +LK +R +T G++ +V GCGGDRD  KR  MG  A  LAD A++T 
Sbjct: 359 AVVDYAHKTDAVESVLKALRKVTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTS 418

Query: 418 DNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKG 468
           DNPRSEDP  I A ++ G   +P   E+G      +R  AI  A+      D ++VAGKG
Sbjct: 419 DNPRSEDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKG 477

Query: 469 HE 470
           HE
Sbjct: 478 HE 479


>gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
 gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
          Length = 483

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 244/476 (51%), Gaps = 26/476 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + KI  + SDSR+++   IF  I G   DGH +I  AI QGA+ ++V S   L+  +  I
Sbjct: 13  DMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAK-VIVHSKELLEKKNGII 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
                 ++V+NT + L+   S ++  +P N   I+ VTG+SGK+ VAS ++    R   +
Sbjct: 72  -----YILVENTLEELNR-VSNIFYDYPSNKMKIIGVTGSSGKTVVASMIKDAMSRYCNT 125

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + IG  S   + F +D   TTP  +YL + L  ++  GV  V++EASSHGL   R+D +
Sbjct: 126 GY-IGTISLEYNGFKEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSHGLALGRVDSV 184

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G +H+D+H T++ Y  AK +LFE + P     ++ +DD   +  ++  ++
Sbjct: 185 NFSVAVMTNIGAEHLDFHGTREQYILAKQKLFEMIKP-SGWVVLNSDD---ENFLRIKNS 240

Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              ++L+ G   +  +  K      +  +  +S +G  +    P+  +F +YN L     
Sbjct: 241 TKGKILTYGINNQSDVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNIYNVLALVCT 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379
            IA+G D  +VL+ ++++  V GR E +    +   + +DY    N+ E I + + ++  
Sbjct: 301 LIAMGCDEKMVLQAVKEVKPVEGRMELIKA-KQNFSVIIDYCQHINNYEQIFEFVDSVRQ 359

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHG 435
             GR+I V G  G R+   R  +GK+A    D  I+T  + R E+     + I+AEI+  
Sbjct: 360 NKGRLIAVLGAPGKRNYKMRREIGKVANKYLDHVILTQLDDRGENVYDICKTIQAEIV-D 418

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           I   I    ++ AI  AIE+  K D++++ GKGHE    +  G      D  I++E
Sbjct: 419 ISSVIIPSRQV-AIEQAIEIACKDDIILILGKGHEKFISLEVGHVDYPGDSTIVKE 473


>gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila abortus S26/3]
 gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila abortus S26/3]
          Length = 483

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 149/496 (30%), Positives = 245/496 (49%), Gaps = 57/496 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++S         ++  ++ DSR++  G IF+A  G   DG+ F 
Sbjct: 1   MNLKELLHNTKAKIYGKIS-------SVEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
             A+  GA A+  S           I S+ P L  D         A++ YG HP     +
Sbjct: 54  HLAVENGAIAVASSIYNPFLPVVQIISSDLPRLEAD--------LAAKYYG-HPSQKLCV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALS 175
           + +TGT+GK++V+  ++ +       +  IG    I  +S  QD   TTP    L K L+
Sbjct: 105 VGITGTNGKTTVSHLIKLLFDACDKPAGLIGTIEHILGNSRIQDG-YTTPESCLLQKYLA 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +    ++   +E SS GL  +RL  +    G  TNL  DH+D+H + + Y  AK++LF 
Sbjct: 164 KMVKSHLSAAVMEVSSIGLAVNRLANVDFDVGVLTNLTLDHLDFHSSFEEYKQAKLKLF- 222

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +LP    A++  D   + + ++       + ++ G +          A +    V  S 
Sbjct: 223 SMLPSSGLAVVNNDLCDAAQFIEATQ---AQPITYGIEQH--------ADYQASHVRFSP 271

Query: 296 EGKDFDFLF---------PLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGR 345
            G DFD L+         PL G+  +YN L A  +    +  D   ++  +  +    GR
Sbjct: 272 FGTDFDLLYKGETFACYSPLIGQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMG 403
            E + +      IY+DYAHT ++L+ + + ++ +    GR+IVVFGCGGDRDQ KR IM 
Sbjct: 332 LEPIFSGP--CPIYIDYAHTPDALDNVCQTLQALLPQDGRLIVVFGCGGDRDQSKRKIMA 389

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNK 458
           ++ ++    A+VT DNPR EDPEKI  EI     GF+++      +R +AI  A+ + + 
Sbjct: 390 QV-VEKYGFAVVTTDNPRGEDPEKIINEI---CSGFLKRNFSIEIDRKQAITYALSIASD 445

Query: 459 QDVLVVAGKGHETVHI 474
           +D+++VAGKGHET  I
Sbjct: 446 RDIVLVAGKGHETYQI 461


>gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
 gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
          Length = 495

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 231/464 (49%), Gaps = 31/464 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P    + +I  +S  S  +  G +FVAI G   DG  +I  AI +GA  IV  S     
Sbjct: 20  LPADVEQLEITGISESSLQVTNGHLFVAISGYATDGEAYIGNAIERGASLIVTES----- 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
           D +A  R N P + VDN R+ LSL  S  Y    ++  ++ +TGT+GK++ A F+Q + +
Sbjct: 75  DLTA--RENVPFIQVDNARERLSLLVSAFYHNPSQDKLVIGITGTNGKTTTALFLQHLLK 132

Query: 139 RSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           ++G      G   + I+    +++LTTPS   +  +L++ S+  V  V +E SS GL Q+
Sbjct: 133 KAGFEVAYFGTVYNEITCQRYESKLTTPSATEIQASLAW-SNDDV--VVIETSSQGLHQY 189

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ G++     FTNL  DH+DY++T +AY+ AK  LF  L+  +  A+I +   +   + 
Sbjct: 190 RMAGMQFDYALFTNLQHDHLDYYKTMEAYYQAKKSLF-SLMKADGKAVINSYTMWGNRLA 248

Query: 258 KRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQV 312
           K     G +VL+V    G     +      A+     V  + +G   + +  PL G +  
Sbjct: 249 KELAANGKQVLTVDTKKGATSYVLDKTTDTAV-----VAFNGQGGQIEEIEAPLSGVYNQ 303

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N ++A  + + +G+D+    E +     + GR E+    + G  + VDYAHT +++E +
Sbjct: 304 ENLILATTVMVDLGLDAGNTNEAIADFAGIAGRLEYYPL-ADGNEMVVDYAHTPDAIEAL 362

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN----PRSEDPEK 427
           L  +     +  II +FG  G RD  K P M   +   AD+ I+T D+    P+    EK
Sbjct: 363 LTTLNAQYPNHEIIHIFGFRGQRDTKKFPQMVSASQTGADLTILTTDDLNGVPKQVMAEK 422

Query: 428 IRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               +  +G+       +R+EA+  A+EM      LV+ GKGHE
Sbjct: 423 YLEYVTQYGLDSMAMALDRVEAVELALEMSPNPVFLVLTGKGHE 466


>gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 504

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 151/495 (30%), Positives = 224/495 (45%), Gaps = 48/495 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +S DSR    G ++ A+ G   DGH F+ QAIA GA A++     SL          
Sbjct: 25  ISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAAGARAVIHQVPLSL------YHPE 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSS-- 144
              L V N+R  +S  A+  Y  HP  +L    VTGT GKSS  SF+ Q+    GL    
Sbjct: 79  IAYLQVTNSRISMSPVAAAFY-DHPSRVLKVIGVTGTDGKSSTVSFLHQLLTGMGLKCGF 137

Query: 145 -----FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--QH 197
                F  G  S  + F Q    +TP    + K L  +   G +H  +E++SHGL    +
Sbjct: 138 LSTVQFNTGGESVKNHFRQ----STPEATEIHKTLRAMVEAGCSHAVIESTSHGLSPKNN 193

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RL  I   A   TN+  +H+++H T + Y + K  LF         A+I  DD       
Sbjct: 194 RLGDICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQNRGIAVINIDDKNHNLFA 253

Query: 258 KRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             A  +GCR +S     G Q      + +         T+     +      + G F V 
Sbjct: 254 GTA--SGCRSISFYSATGAQKADYRARGIEETPASIAFTLDSPKGEARVDLNVAGRFNVD 311

Query: 314 NALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           N L A A +C   G++   +      L  V GR   V    +  ++ VDYAHT  +   +
Sbjct: 312 NILAASAAVCELEGVEPKTLEPLFPGLKAVKGRMVPV-DEGQAFQVIVDYAHTPGAFRRL 370

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              IR +  GR+  +F   G+RD  KRP++G IA +  D+ ++ D++PR E+P  +  E+
Sbjct: 371 FPAIRPLVRGRLFALFSSAGERDLEKRPVLGSIADEYCDVIVLADEDPRGENPMALLEEV 430

Query: 433 IHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG-----E 479
             G            IE  NR EA+R A  M+ K D +++ GKGHE   I  NG     E
Sbjct: 431 ASGCRNKTKGKSLFLIE--NRKEAMRHAFSMMKKDDCILLLGKGHEGSIIYANGPVPWDE 488

Query: 480 KKMSVDCDIIREILG 494
           ++M+    ++RE+ G
Sbjct: 489 EEMAR--ILLRELTG 501


>gi|311113335|ref|YP_003984557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
 gi|310944829|gb|ADP41123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
          Length = 572

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 156/515 (30%), Positives = 246/515 (47%), Gaps = 57/515 (11%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +    +   Q  E  +  +S DSR ++   ++VA+ G K  G  F  +A+   A AI+
Sbjct: 42  EALGAHPVLEHQSSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101

Query: 73  VSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128
             +A       A +      +LV D+ R  +   A+ +YG       N  AVTGT+GK++
Sbjct: 102 TDTAGVRMIREANLSLDRCSLLVCDSLRPVIGSLAALIYGSQDYKGLNRYAVTGTNGKTT 161

Query: 129 VASFVQQICQ-----RSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
               ++ + +     ++GL  + QI     +   +  + LTTP  +++   L+ +   GV
Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQI----LVDGVSVPSALTTPESVHVHSLLAIMGECGV 217

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +H ++E SSH +D HR+DG+      FTNL +DH+D H T Q YF++K +LF     +  
Sbjct: 218 SHAAMEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTP--ERTE 275

Query: 243 PAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGK 298
            A+I ADD + +++++ A      G  V  V   G  + L +V A         I+VE  
Sbjct: 276 RAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYG--MGLAEVPAEFGPLDWAVINVERD 333

Query: 299 DFDFLFP--------------LPGEFQVYNALVAAGLCIAIG-------IDSALVLEHLE 337
                F               LP +F V NA +AA L + IG       I    + +   
Sbjct: 334 GLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAA-LMVYIGASEEERIILRPALADGTA 392

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              +VPGR + +   S      VD+AH  + L   L+ +     GR+I+VFG  G+RD  
Sbjct: 393 LTPIVPGRMQLI---SLAPHTIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDHL 449

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE---------- 447
           KRP+MG+IA   ADI IVTDD+P  EDP  IR  ++ G      +G R            
Sbjct: 450 KRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPREV 509

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           AI  AIE+ + +D +++AG+GHET   V   + ++
Sbjct: 510 AIARAIELADARDAILIAGRGHETAQDVAGTDVQL 544


>gi|291458599|ref|ZP_06597989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419132|gb|EFE92851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 518

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 152/482 (31%), Positives = 245/482 (50%), Gaps = 34/482 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIR 87
           ++ EV  DSR    G +FV + G+  D H F+ + IA+G EAIVV    S+       I 
Sbjct: 45  EVGEVIYDSRKAGRGSVFVCMRGSTTDSHSFLQKVIAEGTEAIVVEEESSMLPVDLREIY 104

Query: 88  SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               ++ V ++R+ L+  ++  +G       ++AVTGT GK++ A  ++ I + +G S  
Sbjct: 105 EGIAVVRVPSSREALAKLSAARFGFPSREMRVIAVTGTKGKTTTAHMIRSILESAGESCG 164

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG T    +   ++ + TTP    L      ++ +G  +V +EASS G   +R D I  
Sbjct: 165 LIGTTGVDYAGIHEETKNTTPESYELQDLFRRMADRGCGYVVMEASSQGFKLYRTDAIDF 224

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G FTN+  DHI  + H+  + Y   K R+F +        +I  D  Y++E++     
Sbjct: 225 DYGIFTNIEPDHIGPNEHKDFEEYKYYKSRIFRQ----SRVGLINRDSPYAEELIA---G 277

Query: 263 AGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVY 313
           A CR+   G       + + + A+++   V     G +F        D    LPG++ VY
Sbjct: 278 AKCRMYCFGIDKSADFMAEGIQAVNSPDFV-----GSEFQVIGMAKLDVRLNLPGKYNVY 332

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A  +C  IGI ++ +L+ L +L  V GR E    N     + VDYAH +  +E +L
Sbjct: 333 NAMAAISVCSLIGIRNSAILKAL-RLIRVNGRMELAFKNDTMS-VIVDYAHNAMGMENLL 390

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R     R++VVFGCGG+R + +R  MG+ A  LAD +++T DN R E  E I ++I 
Sbjct: 391 ETLREYHPKRLVVVFGCGGNRSKERRYGMGETAARLADFSVLTADNSRFERTEDIISDIK 450

Query: 434 HG-IP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
              +P    + E  +R EAI  A++   K D++ V GKGHE  + V NG +   +D ++I
Sbjct: 451 SRLVPLGGRYAEIPDRREAIEYAMKNAEKGDIIAVIGKGHEDYNEV-NGARTHFLDREVI 509

Query: 490 RE 491
            E
Sbjct: 510 EE 511


>gi|302386509|ref|YP_003822331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
 gi|302197137|gb|ADL04708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
          Length = 491

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 225/478 (47%), Gaps = 37/478 (7%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E +  L+   +Q   + ++ EV  DSR  + G +FV + G + D H FIP+ +  G +
Sbjct: 3   FKEWLKDLTYEVLQGSLDVEVEEVIYDSRKARNGAVFVCMKGTRTDSHEFIPEVVNAGVQ 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            +VV     L D           ++V N R+ L+L ++  +G   E +  + VTGT GK+
Sbjct: 63  ILVVERKTELPD-------GVTAILVHNAREALALLSAARFGYPAEKMVTIGVTGTKGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ + +  G     IG T   I         TTP    L +A  +++  G  ++ 
Sbjct: 116 TTTHMIKTVLEACGKKVGMIGTTGIVIGQEVTPTVNTTPESYELHQAFCHMAEAGCEYMV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS     HR+DGI    G FTN+  DHI  D H   + Y   K R+F          
Sbjct: 176 MEVSSQAFKMHRVDGISFDYGLFTNISPDHIGPDEHADFEEYLYYKSRIFSCC----KVG 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
           I+  DD +  EV+K   +A CR+ S   + K    K     +  Q   + +E   FD   
Sbjct: 232 IMNGDDEHWAEVVK---DATCRLYSFSMEKKSTDFKAEAIRYIAQPDFVGLE---FDIKG 285

Query: 303 ------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG F V NAL A  +   +G+    +   LE L+V  GR E V  +S   
Sbjct: 286 ISQLSVRVNIPGRFNVANALAAVSVLSFLGLPKENICHGLEHLNV-NGRMEIV-YSSETC 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAH + S+E +L  +R     R++ VFGCGG+R + +R  MG  A  LAD  I+T
Sbjct: 344 TVIVDYAHNAVSMESLLSTLRDYRPKRLVCVFGCGGNRSKDRRITMGDSAGRLADFTIIT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            DN R E  E I A+I   +      FIE  +R EAIR +I      D++ + GKGHE
Sbjct: 404 ADNSRYEKTEDIIADIRKSLEKTGGKFIEIPDRREAIRYSITHAQPGDMIAIIGKGHE 461


>gi|302533956|ref|ZP_07286298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
 gi|302442851|gb|EFL14667.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
          Length = 564

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 144/461 (31%), Positives = 225/461 (48%), Gaps = 33/461 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++ DSR ++ G ++ A+ G +  G  F     A    A V++     +  +AT   
Sbjct: 82  QITGITHDSRAVRPGDLYAALPGARLHGADFA-AQAAALGAAAVLTDPEGAERAAAT--- 137

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+L V + R  +   A+ +YG+  E +L   +TGTSGK++ A  V+   + +G ++  
Sbjct: 138 GLPVLAVADPRARMGELAAEIYGRPGEALLQLGITGTSGKTTTAYLVEGGLRAAGRTTGL 197

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   T+     D R+    TTP    L    + +  +GV  V++E SSH L   R+DG 
Sbjct: 198 VG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGC 254

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 F NL  +H+++H   + YF AK +LF E   +    ++  DD Y + + K A  
Sbjct: 255 VFDVAVFNNLSPEHMEFHTGMEDYFQAKAQLFTER--RARLGVVNLDDEYGRRLAKEASI 312

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 + G        + V + H    +T +  EG+      PLPG F V N + A   
Sbjct: 313 PVVTFSAAGDPAADWRAEDVVSGHMDSTLTLVGPEGQRVRAKAPLPGPFNVANTVAAIVT 372

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRT 378
             A G+D     + +  +  VPGR E V      G+ Y   VDYAH ++++E +L+ +R 
Sbjct: 373 LAAAGLDPQTAADGVAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLRALRE 428

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--- 435
           +T+G++ +V GCGGDRD  KR  MG  A   AD A++T DNPRSEDP KI A +  G   
Sbjct: 429 VTTGKLHIVLGCGGDRDTTKRAPMGAAAARYADTAVLTSDNPRSEDPLKILAAMFEGAVS 488

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQ------DVLVVAGKGHE 470
           +P   E+G  +     A  +          D ++VAGKGHE
Sbjct: 489 VPAE-ERGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHE 528


>gi|227872144|ref|ZP_03990514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
 gi|227842002|gb|EEJ52262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
          Length = 495

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 154/485 (31%), Positives = 242/485 (49%), Gaps = 40/485 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-- 86
           + + +S DSR  +AG +F+ + G+  D H  IP+ + +G    VV    +L D    +  
Sbjct: 22  EFSSLSYDSRRAKAGDLFLCMKGSTMDSHDKIPELLEKGVRVFVVEK--NLPDLPKEMQD 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
           R +  I+ V+N RK L+  ++  Y  +P     ++ +TGT GK++ AS V+ I   +G +
Sbjct: 80  REDLCIVQVENGRKALAELSA-FYFSYPSKEMLMIGITGTKGKTTTASMVRAILTEAGYN 138

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG T    +   +++R TTP    L +    +  +G   V +EASS G   HR DGI
Sbjct: 139 CGLIGTTGIDYAGIHEESRNTTPESYTLQETFRKMKEKGCNAVVMEASSQGFKMHRTDGI 198

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G FTN+  DHI  + H+    Y   K R+F     +    ++  D  +S+E M+ A
Sbjct: 199 LFDYGIFTNIEEDHIGENEHKDFAEYKYYKSRIF----TQSKTGLVNLDADFSEEFMENA 254

Query: 261 HNAGCRVLSVGYQGKFI---------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               C   ++  Q  F+         H    C  H +         +D++    LPG + 
Sbjct: 255 E-CPCFSFALKKQADFMATEIEDLHRHDFLGCRFHFRHGE------EDWEIWNHLPGRYN 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLE 370
           VYNAL A  L   +GI   +V   L K+ V  GR E V    RGG  + VDYAH +  ++
Sbjct: 308 VYNALAAISLASLLGIKKEVVQSALRKIQV-NGRMEVV--LQRGGYTVLVDYAHNAMGMK 364

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L+ ++     R+IVVFGCGG+R + +R  MG++A ++AD  I+T DN R E    I +
Sbjct: 365 NLLETLKAYKPKRLIVVFGCGGNRAKERRYGMGEVAGEMADFTILTADNSRYEKTMDIIS 424

Query: 431 EIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           +I   +      +++  +R EAIR A+E   + D++ V GKGHE  + V NG     VD 
Sbjct: 425 DIESTLSKKTKNYVKIEDRREAIRYALEQAEEGDLIAVIGKGHEEYNEV-NGTFTRFVDR 483

Query: 487 DIIRE 491
           ++I E
Sbjct: 484 EVILE 488


>gi|89902199|ref|YP_524670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
 gi|89346936|gb|ABD71139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
          Length = 538

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 163/530 (30%), Positives = 239/530 (45%), Gaps = 65/530 (12%)

Query: 17  QLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-- 73
           Q  I  + W R R    + +DSR +Q G  F+A  G   D   F+  A+A GA A +V  
Sbjct: 5   QTPIEAVAWLRSRVTGTLQTDSRKLQPGDGFIAWPGAAADARQFVASALASGAGACLVER 64

Query: 74  --SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
             + AY+         S+  +    N +    L A+  + +  +  ++LAVTGT+GK+S 
Sbjct: 65  LGAEAYAF--------SSDKVAAYANLKAASGLIAAAYFDQPSQQLDVLAVTGTNGKTST 116

Query: 130 ASFVQQICQRSGL---------SSFQIGPTST----------ISSFAQD-------NRLT 163
           A ++ Q      L          +  IG              +++   D         LT
Sbjct: 117 AWWLAQALSNLKLVTPIPCGLVGTLGIGTPPPPASGQPPVGLVAAHGADPLAGMVATGLT 176

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           TP P+ L +AL     +G    ++EASS GL + RL+G  +    FTN  +DH+DYH   
Sbjct: 177 TPDPVLLQQALRRFVDRGFQACALEASSIGLQEQRLNGTHIRTAIFTNFTQDHLDYHGAM 236

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY+  K  LF+   P    A+I  DD    E+ +        V +V    +   L+   
Sbjct: 237 AAYWQVKASLFQ--WPGLQSAVINIDDPQGAELAETLRGKLLDVWTVSCVAE-ARLQACD 293

Query: 284 AIHNKQQVTISV-------------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +H+   +  +V              G+       L G + V N L        +G+  A
Sbjct: 294 IVHDAPGLRFTVLEHGPDGANGPGGAGQRHVLQTRLIGSYNVANLLGVMAAMRCLGVPLA 353

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVV 387
            V+     L  VPGR E  G   +     VDYAHT ++L   L+ +R +     GR+  V
Sbjct: 354 AVVASCADLTAVPGRMECWGAPGQP-LAAVDYAHTPDALGKALQALRPLADQRGGRLWCV 412

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444
           FGCGGDRD  KRP+MG IA   AD  +VT DNPRSE P+ I ++I+ G+   P    + +
Sbjct: 413 FGCGGDRDTAKRPLMGAIAASHADCVVVTSDNPRSERPDAIISQILLGLTGYPALTVEPD 472

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           R  AI  AI     QDVL++AGKGHE    V  G++    D + +R  LG
Sbjct: 473 RARAIAQAIAQAAPQDVLLIAGKGHEDYQEVA-GQRLPFSDAEQVRRALG 521


>gi|325662247|ref|ZP_08150862.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086048|ref|ZP_08335131.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471499|gb|EGC74720.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406971|gb|EGG86476.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 490

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 155/486 (31%), Positives = 237/486 (48%), Gaps = 38/486 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E +I E+++DSR +  G +FV I G   DGH +I +   +GA A++V            
Sbjct: 19  KEIEITELTNDSRKVTEGSVFVCISGAVSDGHQYIEEVGKKGAAAVIVEKDVEAPKHMTV 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGL 142
           IR       V++TR  L+L ++  +G +P   L V G +G     +    V+ I +  G 
Sbjct: 79  IR-------VEDTRYALALASAAYFG-YPAEQLKVIGITGTKGKTTTTYMVKSILEEVG- 129

Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              ++G   TI +   D  +    TTP    + +    +   G   V +E SS GL  HR
Sbjct: 130 --HKVGLIGTIEAIIGDEVIPAVNTTPESFTIHQYFRKMVDAGCDAVVMEVSSQGLMLHR 187

Query: 199 LDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             GI    G FTNLG DHI  + H+  + Y   K  LF +        I   DD Y K+V
Sbjct: 188 TAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFRQC----KIGIANVDDPYFKDV 243

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEG-KDFDFLFPLPGEFQV 312
            +    A C + + G+  K     +   +  +     V   V G  DFD    +PG F V
Sbjct: 244 FR---EATCEIETFGFSEKADLRAEHAELVTRPGYLGVAYHVAGLMDFDVEIDIPGTFSV 300

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN+L A  +C    + S  + + L K+  V GR E V  +     + +DYAH + SLE +
Sbjct: 301 YNSLTAIAVCRHFNVPSEKIQKAL-KVAKVKGRIEMVKVSDEF-TLMIDYAHNAMSLESL 358

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNPR E+P++I  +I
Sbjct: 359 LTTLKEYHPKRLVCLFGCGGNRSKTRRYEMGEVSGRLADLTIITSDNPRFEEPQEIIDDI 418

Query: 433 IHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
             G+      ++E  +R EAIR AI      DV+V+AGKGHE    +  G K    + D+
Sbjct: 419 KIGMKKTDGAYVEICDRKEAIRYAIVNGQPGDVIVLAGKGHEDYQEI-KGVKYAMDERDL 477

Query: 489 IREILG 494
           I +IL 
Sbjct: 478 IADILA 483


>gi|225416617|ref|ZP_03761806.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
 gi|225041863|gb|EEG52109.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
          Length = 498

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 148/487 (30%), Positives = 231/487 (47%), Gaps = 35/487 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++++VS DSR  + G +FV + G + D HLFIPQ    G   IV+     L++    +
Sbjct: 20  EVQVSDVSYDSRKAKEGDVFVCMTGTRVDSHLFIPQVEEAGVRVIVIERP--LEELLKAV 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144
                +L V + R+ L+L ++  +G     ++ V  T  K    +   ++ I + +G   
Sbjct: 78  SPQVTVLRVKDGRRALALLSAARFGYPARKMITVGVTGTKGKTTTTHMIKAILEAAGKKV 137

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   T I      N  TTP    L +A + +   G  ++ +E SS G+  HR DG+ 
Sbjct: 138 GMIGTNGTVIGDRVTPNLNTTPESYQLHQAFADMVEAGCEYMIMEVSSQGIKMHRTDGLF 197

Query: 204 LIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
              G FTN+  DHI  D H     Y   K RL    +      ++   D + + ++K   
Sbjct: 198 FDYGLFTNISPDHIGPDEHADFGEYLYYKSRL----MTMCKVGLVNRGDEHYEGIIK--- 250

Query: 262 NAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEF 310
           +A CR+           S  ++ + I   +  A  N       V G    D    +PG F
Sbjct: 251 DASCRLYTYCVAEGDGASADFEARNI---RYVAEENFVGTEFDVTGWLSMDVRLGIPGLF 307

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL A  LC  +G+D   +   LE + +  GR E V T+ R   + VDYAH + S+E
Sbjct: 308 NVDNALAAMSLCSFMGLDKQRMSHALEHIRI-NGRMEIVHTSKRC-TVLVDYAHNAVSME 365

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L  +R     R++ VFGCGG+R + +R  MG+I   +AD+ I+T DN R E PE I A
Sbjct: 366 SLLGTLRNYHPKRLVCVFGCGGNRSKDRRYSMGEIGGRMADLCILTADNSRYEKPEDIIA 425

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           +I   I      F+E  +R +AI  +IE     D++ + GKGHE    +  G +   +D 
Sbjct: 426 DIRSSIEKTGGDFVEIPDRRQAIEYSIENARPGDMIAIIGKGHEDYQEIC-GVRHHFLDR 484

Query: 487 DIIREIL 493
           ++I E +
Sbjct: 485 EVIEETV 491


>gi|323487025|ref|ZP_08092337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
 gi|323399673|gb|EGA92059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
          Length = 487

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 223/457 (48%), Gaps = 29/457 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++++V  DSR   AG +FV + G   D H FIP  I +GA+ +V   A        T+
Sbjct: 20  DEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKGAKVLVTEEA-------VTV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
                +L V N R  LSL ++  +G +P   +   G +G     +    ++ I + +G  
Sbjct: 73  PEEITVLRVGNGRNALSLLSAARFG-YPARKMTTIGVTGTKGKTTTTYMIKAILEAAGEK 131

Query: 144 SFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +  IG    I     F   N  TTP    L +  + +  QG  ++ +E SS     HR+D
Sbjct: 132 TGLIGTNGAIIGSDHFPTMN--TTPESYILQEYFAKMVEQGCRYMVMEVSSQSYLMHRVD 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI      F N+  DHI     + A F   +   + LL      ++  DD + +E+++ A
Sbjct: 190 GIFFDYSIFLNISNDHIG--PNEHASFEEYLYYKKLLLQNSRVCLVNRDDGHYREIIEGA 247

Query: 261 HNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALV 317
             A  +  S+ +   F     K    H+   +   +EG D++      +PG F VYNA+ 
Sbjct: 248 -KAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEG-DYESRLRVNVPGLFNVYNAMA 305

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           AAG+C  +G+    V   LE + V  GR E V  +++   I VDYAH + S+E +L  +R
Sbjct: 306 AAGVCSCLGLSKERVAHALEHMQV-DGRMEIVYKSAKCTVI-VDYAHNAVSMESLLMTLR 363

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                R++VVFGCGG+R + +R  MG+I   LAD++I+T DN R E    I A+I  G+ 
Sbjct: 364 DYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIITADNSRFEKTSDILADIKTGLS 423

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                FIE  +R EAI  ++    + D++ + GKGHE
Sbjct: 424 RTEGKFIEIPDRREAIEYSLSHAQEGDIIAIIGKGHE 460


>gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
          Length = 522

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 145/461 (31%), Positives = 229/461 (49%), Gaps = 35/461 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A V++     +  +AT    
Sbjct: 34  VTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAVA-VLTDPTGAERAAAT---G 89

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LV +N R  +   A+ +YG+    +L   +TGTSGK++ A  V+   + +G  +  I
Sbjct: 90  LPVLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTTTAYLVEGGLRAAGRPTGLI 149

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T+     D R+    TTP    L    + +  +GV  V++E SSH L   R+DG  
Sbjct: 150 G---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCV 206

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHN 262
                F NL  +H+++H   + YF AK +LF    P+ S   ++  DD Y + ++  +  
Sbjct: 207 FDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPERSHRGVVNFDDEYGRRLITESGV 263

Query: 263 AGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 + G+     H + V     +     +  +G+      PLPG F V N L A   
Sbjct: 264 PVTTFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPLPGPFNVANTLAAIVT 323

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRT 378
               G+   +  + +  +  VPGR E V      G+ Y   VDYAH ++++E +L+++R 
Sbjct: 324 LAVAGVAPQIAADGVAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLRSLRK 379

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--- 435
           +T G++ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP  I A ++ G   
Sbjct: 380 VTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLAILAAMLSGAAE 439

Query: 436 IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470
           +P   E+G+ +       AI  A+      D ++VAGKGHE
Sbjct: 440 VP-VHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHE 479


>gi|167768013|ref|ZP_02440066.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|317498393|ref|ZP_07956688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167710342|gb|EDS20921.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|291561015|emb|CBL39815.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SSC/2]
 gi|316894287|gb|EFV16474.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 485

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 144/481 (29%), Positives = 241/481 (50%), Gaps = 36/481 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ +  DSR I+ G +FV I G   DGH F+ QA   GA A+VV            +  
Sbjct: 22  EISTLVYDSRKIEKGSVFVCISGAAFDGHKFVAQAAELGAAAVVVEK-------DVEVPE 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
           N  ++  DNTR  L+  ++  +G   E +  +  T  K    +   ++ + + +G  +  
Sbjct: 75  NLTVIKFDNTRLALAEMSAAYFGYPAEELTTIGITGTKGKTTTTYMIRAVLEHAGQKTGL 134

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           IG   TI +   D R+    TTP    + ++   ++  G+ +V +E SS  L  HR  G 
Sbjct: 135 IG---TIETIIGDERIPSVNTTPESYIVQESFRKMADAGLKNVVMEVSSQALMLHRTSGF 191

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           +   G FTNL  DHI  + H+    Y + K  LF++        I+  DD Y + ++K  
Sbjct: 192 EFDYGIFTNLAEDHIGENEHKDMDDYIHCKSLLFKQC----KQGIVNGDDDYVERIIK-- 245

Query: 261 HNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNAL 316
            +  C + + G +    ++ + +  I     + ++ + K   +++    +PG+F VYN+L
Sbjct: 246 -DHTCAIETYGMKDTNDVYAENITRIQEPGYLGVAYDLKGKQEYNVHVDIPGDFTVYNSL 304

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  LC  +GI    VL  L  + V  GR E + T      + +DYAH + SLE +L  I
Sbjct: 305 AAISLCRHMGIVKEDVLSALNTIQV-KGRLEIIKTPG-DYTLMIDYAHNAMSLESLLTTI 362

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R     +I  +FGCGG+R + +R  MG+++  LAD+ +VT DNPR+E+P  I  +I+ G+
Sbjct: 363 RKYNPKKIYCLFGCGGNRAKARRYEMGEVSSKLADLTVVTSDNPRNEEPMDIINDILIGV 422

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 ++   +R EAI+  +E     D++++AGKGHE    +  G K    + D+I+EI
Sbjct: 423 HKADGEYVTIPDRKEAIKYCMEHAGAGDIVILAGKGHEDYQEI-KGVKHHMDERDLIQEI 481

Query: 493 L 493
           +
Sbjct: 482 I 482


>gi|73663076|ref|YP_301857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495591|dbj|BAE18912.1| UDP-N-acetylmuramyl tripeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 495

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/462 (29%), Positives = 224/462 (48%), Gaps = 29/462 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+ I ++++DSR  Q G +FVA  G   D H F    + QG + I+VS           I
Sbjct: 21  EKNITDITTDSRTAQHGSVFVASKGYTVDSHKFCQDVVNQGCQVIIVSH-------QQEI 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  SL A+ LY    + ++   VTGT+GK+S+A+ +  I ++ G  S
Sbjct: 74  TGDVTQVIVPDTLRVASLLANTLYNYPSKQLITYGVTGTNGKTSIATMIHHIYRKLGKGS 133

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K ++    +    +++E SSHGL   RL G+ 
Sbjct: 134 AYLGTNGFQINEDKSKGANTTPETVSLTKKINEAVEKNAEAMTLEVSSHGLSLGRLRGVD 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L +E   ++  DDA+S+ +   A
Sbjct: 194 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSQEKFVVLNKDDAFSEYL---A 250

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNA 315
                 V + G         +  A H  +     Q T      +F    P  G F V N 
Sbjct: 251 SVTPFEVFTYGVTND----AQFTAHHINESLQGVQFTFKTPEGEFQVKSPYVGLFNVSNI 306

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A     + GI    +++ +E L  V GR E +   S    + +DYAHT++ ++ ++  
Sbjct: 307 MAAMIAVWSKGIALNDIVDAVENLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMDKLIDA 365

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++ P+ +  E+  G
Sbjct: 366 VKPFAKQKLIFLCGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDAPKTLTQELAKG 424

Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                +IE  +R E IR AI +    D +V+A KG E   I+
Sbjct: 425 ATHDNYIEFEDRAEGIRHAINIAEPGDTVVLASKGREPYQIM 466


>gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
          Length = 515

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 159/489 (32%), Positives = 238/489 (48%), Gaps = 50/489 (10%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL +QL + P   R  ++  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A+ 
Sbjct: 19  ELADQLGL-PAPERNAEVTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAVAV- 76

Query: 73  VSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127
                 L D S   R   +  P LVVD+ R  +   A  +YG    ++L   +TGTSGK+
Sbjct: 77  ------LTDPSGAERVAATGLPALVVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKT 130

Query: 128 SVASFVQQICQRS-----GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLS 178
           + A  V+   + +     G    ++G   T+     + R+    TTP    L    + + 
Sbjct: 131 TTAYLVEGGLKTARGTDEGGGGRRVGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMR 190

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   V++E SSH L   R+DG       FTNL  +H+++H   + YF AK +LF    
Sbjct: 191 ERGTDAVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSDMEDYFRAKAQLF---T 247

Query: 239 PKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTI 293
           P+ S   ++  DD Y + + K    AG  V++   +G      +   +     +     I
Sbjct: 248 PERSRLGVVNVDDEYGRRLAK---EAGVPVVTYSAEGHPDADWRTEDVRVGPLDSSFTVI 304

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             E +      PLPG F V N L A     A G+D     + +  +  VPGR E V    
Sbjct: 305 GPEDQRVAARSPLPGPFNVANTLAAIVALAAAGLDPQAAADGVAAVPGVPGRLERVDA-- 362

Query: 354 RGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             G+ Y   VDYAH ++++E +L+ +R +T GR+ VV GCGGDRD  KR  MG  A  LA
Sbjct: 363 --GQPYLAVVDYAHKTDAVESVLRTLRRVTEGRVHVVLGCGGDRDITKRAPMGAAAARLA 420

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDV 461
           D A++T DNPRSEDP  I A ++ G   +P   E+G      +R  AI  A+      D 
Sbjct: 421 DTAVLTSDNPRSEDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARARPGDT 479

Query: 462 LVVAGKGHE 470
           ++VAGKGHE
Sbjct: 480 VLVAGKGHE 488


>gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 513

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 233/455 (51%), Gaps = 41/455 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ +S  I+ G++F+AI G K+DGH++I QAI  GA  I++     L +         P 
Sbjct: 53  ITDNSNEIKPGYVFIAIKGYKKDGHIYIQQAIINGA--ILIIGENELMNLEV------PY 104

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L V + RK L   A +L+ K P     ++ +TGT+GK++++ F++ + ++ G S   IG 
Sbjct: 105 LKVKSARKALGQVA-KLFYKDPSKDKIMIGITGTNGKTTISFFIKHLLEKQGYSVSSIG- 162

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGS 208
             TI +     ++ T +    AK ++ L       V V E SS GL+Q RL+GI+     
Sbjct: 163 --TIHNEINGKKIKTINTTPNAKTINQLLVASTDQVVVMEVSSQGLEQDRLEGIQFDYAL 220

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           F NL  DH+DYH T + YF  K  LF++L P    AII +DD++  ++++     G ++L
Sbjct: 221 FNNLQHDHLDYHNTMEEYFECKALLFQKLKP-NGTAIINSDDSWGLKLIEHLTAEGKKIL 279

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIAIG 326
           +VG Q  F +++    I +K+   +SV  K+ ++    PLPG   +YN  +++     +G
Sbjct: 280 TVGEQS-FSNVQ----ILSKELNDVSVMHKNMEYSLRTPLPGMHNLYNLSMSSCAVHELG 334

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    V  ++     + GRFE     +    + VDYAHT ++LE+ +       +  II 
Sbjct: 335 VPYEKVKPYMSDFTGISGRFELFHLENN-VTVVVDYAHTPDALEIAINTAINNGANHIIT 393

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFG  G+RD  KR  M +I   L+D +I+T         +K+  + +      I+K  ++
Sbjct: 394 VFGFAGNRDTSKRKAMLEIVTRLSDSSILTVTELFGSTIDKLYTDYV-----MIQKECQV 448

Query: 447 E-----------AIRTAIEMLNKQDVLVVAGKGHE 470
           E           AI+ AI+     D +++ GKGHE
Sbjct: 449 EDSTSIIMDRTLAIQKAIKDAQPGDWVLLLGKGHE 483


>gi|254382597|ref|ZP_04997955.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
 gi|194341500|gb|EDX22466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
          Length = 567

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 226/460 (49%), Gaps = 33/460 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR ++ G ++ A+ G K  G  F  QA A GA A++   A +  D +A   + 
Sbjct: 86  VTGITHDSRAVRPGDLYAALPGAKLHGADFAAQAAALGAAAVLTDPAGA--DRAAA--TG 141

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+L V + R  +   A+ +YG+  E +L   +TGTSGK++ A  V+   + +G S+  +
Sbjct: 142 LPVLAVADPRGRMGELAAEIYGRPGEGLLQLGITGTSGKTTTAYLVEGGLRGAGRSTGLV 201

Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T+     D R+    TTP    L    + +  +GV  V++E SSH L   R+DG  
Sbjct: 202 G---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCV 258

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                F NL  +H+++H   + YF AK RLF E   +    ++  DD Y + + K A   
Sbjct: 259 FDVAVFNNLSPEHMEFHSDMEDYFQAKARLFTER--RARLGVVNFDDEYGRRLAKEASIP 316

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                + G        + V   H    +T +  EG+      PLPG F V N + A    
Sbjct: 317 VVTFSAAGDPAADWRAEDVVFGHMDSTLTLVGPEGQRVRATAPLPGPFNVANTVAAIVTL 376

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTI 379
            A G+D     + +  +  VPGR E V      G+ Y   VDYAH ++++E +L+ +R +
Sbjct: 377 AAAGLDPQTAADGVAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLRALREV 432

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---I 436
           T+G++ +V GCGGDRD  KR  MG  A   AD A++T DNPRSEDP  I   +  G   +
Sbjct: 433 TTGKLHIVLGCGGDRDTTKRAPMGAAAARFADTAVLTSDNPRSEDPLTILGAMFEGAVSV 492

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQ------DVLVVAGKGHE 470
           P   E+G  +     A  +          D ++VAGKGHE
Sbjct: 493 P-PAERGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHE 531


>gi|308177864|ref|YP_003917270.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
 gi|307745327|emb|CBT76299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
          Length = 530

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 232/459 (50%), Gaps = 31/459 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS + + +Q G +F+ I G K  G  F+  A+A GA A++  +A  L+     +  + P+
Sbjct: 51  VSLNPQIVQPGDVFLGISGAKRHGAEFVETAVANGAVAMITDTA-GLEFLGDGL--SIPV 107

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            VV + RK  +  A  +YG  +    +  VTGT+GK++    ++ I    G  +  IG T
Sbjct: 108 AVVADVRKSAAAIAQNVYGTDQRSPKLFGVTGTNGKTTTTYMIRAILDALGEETGLIG-T 166

Query: 151 STISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +S+  Q   + LTTP    L   L+ ++ Q V+ V++E SSH L   R+D ++     
Sbjct: 167 IEMSARGQIIPSVLTTPESTQLHGVLARMAQQDVSSVAMEVSSHSLSYGRVDSLRFAVSG 226

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           +TNL +DH+D H T   YF  K +LF     +   A++  DD Y + + +RA       L
Sbjct: 227 YTNLTQDHLDLHGTMDEYFETKAQLFTA--ERSERAVVMVDDQYGQRLAERAL-VPTETL 283

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           S+       + +     H+    + ++   +G++      LPG F V N  +AA + +A 
Sbjct: 284 SLDEAHPSAYWRVTELAHSGLGHSFTLRHRDGRELRARTLLPGMFNVANGALAAVMVLAS 343

Query: 326 GIDSALVLEHL---EKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           G++   +   L   + L V VPGR + VG +       VD+AH S++L   L +IR    
Sbjct: 344 GVELDTLQRALNAGDPLSVAVPGRMQVVGESPVA---VVDFAHNSDALAKALDSIRPGEQ 400

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR IVVFG  G+RD+ KRP MG +A   ADI IVTDD+P  EDP  IR ++  G    ++
Sbjct: 401 GRRIVVFGATGERDKTKRPDMGAVAARHADIVIVTDDDPHGEDPAPIREQVASGAQQVLD 460

Query: 442 K----------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                        R +A+  A+ + +  D ++VAG+GHE
Sbjct: 461 TERPGVQVHNIAPRAKAVEFAVSLAHANDAILVAGRGHE 499


>gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 501

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 153/499 (30%), Positives = 235/499 (47%), Gaps = 54/499 (10%)

Query: 1   MKLQDLIYKDFP----ELINQL-------SIFPMQWRERKINEVSSDSRHIQAGWIFVAI 49
           M L+DL     P    E++++L       +  P+  R R I  V  DSR ++ G ++ A+
Sbjct: 1   MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDR-RVITGVCQDSRRVRPGDLYAAL 59

Query: 50  VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
            G +  G  F  +A A+GA A+       L D  + I    P +VVD+ R  L   A+  
Sbjct: 60  PGRRHHGADFASEATARGAVAM-------LSDRPSDI---VPTVVVDDPRVALGPLAAWA 109

Query: 110 YGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRLTTPS 166
           YG      ++  VTGT+GK+S    ++     +GL +  + G T       +    TTP 
Sbjct: 110 YGNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTVRPATRTTPE 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L ++      +GV  V++E SSHGL +HR+DG +   G FTNL RDH+DYH   +AY
Sbjct: 170 ACELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAY 229

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           + AK RLFE  L + +   I  DD Y + +            S    G  ++   V A  
Sbjct: 230 YAAKARLFERDLCERAAVCI--DDDYGRRLAAEVAVPHL-TFSARDPGADVYATTVRAQR 286

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                T+   G+       + G  QV NA+ A       GID    +  +E L  +PGR 
Sbjct: 287 WGSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRL 346

Query: 347 EFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           E V      G+ +   VDY H +     +   +R++T GRI+VV G  G+RD GKR  +G
Sbjct: 347 ERVDV----GQPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLG 402

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIR------------AEIIHGIPGFIEKGNRIEAIRT 451
             A   A++ +VTD++  S+D   +R            AE++  IP      +R EAI  
Sbjct: 403 FTAARYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVV-IP------DRGEAIAV 455

Query: 452 AIEMLNKQDVLVVAGKGHE 470
           A+++    D +++AG+GH+
Sbjct: 456 AVDLAGAGDTVLLAGRGHD 474


>gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 494

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/465 (29%), Positives = 227/465 (48%), Gaps = 41/465 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++++DSR    G IFVA  G   D H F    + QGA+ IVV+     QD +  +   
Sbjct: 23  VTDITTDSRTASEGSIFVASKGYTVDSHKFCQNVVDQGAKVIVVNHQ---QDINGDVTQ- 78

Query: 90  TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++V +T +  SL A  LY    H    + VTGT+GK+S+A+ +  I +  G  S  +
Sbjct: 79  ---VIVPDTLRVASLLAHTLYDFPSHQLTTIGVTGTNGKTSIATMIHLIYRGLGKGSAYL 135

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I+        TTP  + L K +     +    +++E SSHGL   RL G++   
Sbjct: 136 GTNGFQINEHKTRGANTTPETVSLTKKIKQAVDENAEAMTMEVSSHGLSLGRLRGVEFDV 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNA 263
             F+NL +DH+D+H T +AY +AK  LF +L   L KE  A++  DD +SK +   A   
Sbjct: 196 AIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYAVLNNDDDFSKYL---ASVT 252

Query: 264 GCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQV 312
              + + G  +  +F+           + +  S++G  FDF  P+          G+F +
Sbjct: 253 PYEIFTYGIDHDAQFM----------AKNIQESLQGVHFDFDTPIGTYSVKTPYVGKFNI 302

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N + A     + G     ++  +E L  V GR E +   S    + +DYAHT++ +  +
Sbjct: 303 SNIMAAMIAVWSKGTSMEDIVRVVENLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMNKL 361

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  ++     ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+
Sbjct: 362 IDAVKPFVKQKLIFLIGMAGERDLTKTPEMGAVAC-RADYVIFTPDNPANDDPKMLTAEL 420

Query: 433 IHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             G     ++E  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 421 AKGATHNHYVEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|309776031|ref|ZP_07671023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916313|gb|EFP62061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 476

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 226/448 (50%), Gaps = 27/448 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S D+R ++  W+FV   G+  DG  F+ +A+ +GA  +V+      Q+      
Sbjct: 21  RILQGISDDTRDLKKDWLFVCRRGSAYDGATFLQEALDKGA--VVLCDEPLKQEHVYY-- 76

Query: 88  SNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             TP   V+  R+  L L+   L  +   +++ VTGT+GK+SVAS + Q+      +  Q
Sbjct: 77  --TP--YVERIRQALLELYYGDLCAR--LHVIGVTGTNGKTSVASIISQLLAMEDCAVLQ 130

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG  S        +   TTP    LA         G+THV +E SSH +DQ+R+  ++  
Sbjct: 131 IGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAVQTGITHVVMEVSSHAIDQNRISFLQFD 190

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264
              +TN+ +DH+DYH ++  Y   K +L   L P+ +  IIY  D +Y +E++  A +  
Sbjct: 191 DIVYTNITQDHLDYHLSRVHYRYTKFKLRRYLKPQGT--IIYNSDLSYMQELVNLAQHT- 247

Query: 265 CRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              +S+G Q     L +V  + H+     +S   + + F   L G   VYN   A  +  
Sbjct: 248 --CISIGMQAAHFPLSEVQLSAHD-----LSFHLQGYAFHARLLGMVNVYNLAEAIVVVH 300

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G     +++  E+L  V GR E +     G  I++DYAHT+++++ +L    ++  GR
Sbjct: 301 RTGCSYERLVQDCEQLKPVSGRMEVMEVG--GFTIWIDYAHTASAVKELLLFANSVKKGR 358

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEK 442
           I+ + GCGG+RD+ KRP M  IA   +DIA+ T DNPR E    I  ++        +  
Sbjct: 359 ILTILGCGGERDRTKRPQMAAIAAAYSDIAVFTSDNPRGESVADILQDMKCESFSNAVVF 418

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            NR  AI+  I++    D++++AGKG E
Sbjct: 419 ENRYFAIKHTIKVAQNSDIIIIAGKGSE 446


>gi|323692067|ref|ZP_08106314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
 gi|323503867|gb|EGB19682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
          Length = 487

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 222/457 (48%), Gaps = 29/457 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++++V  DSR   AG +FV + G   D H FIP  I +GA+ +V   A        T+
Sbjct: 20  DEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKGAKVLVTEEA-------VTV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
                +L V N R  LSL ++  +G +P   +   G +G     +    ++ I + +G  
Sbjct: 73  PEEITVLRVGNGRNALSLLSAARFG-YPARKMTTIGVTGTKGKTTTTYMIKAILEAAGEK 131

Query: 144 SFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +  IG    I     F   N  TTP    L +  + +  QG  ++ +E SS     HR+D
Sbjct: 132 TGLIGTNGAIIGSDHFPTMN--TTPESYILQEYFAKMVEQGCRYMVMEVSSQSYLMHRVD 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI      F N+  DHI     + A F   +   + LL      ++  DD + +E+++ A
Sbjct: 190 GIFFDYSIFLNISNDHIG--PNEHASFEEYLYYKKLLLQNSRVCLVNRDDGHFREIIEGA 247

Query: 261 HNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALV 317
             A  +  S+ +   F     K    H+   +   +EG D++      +PG F VYNA+ 
Sbjct: 248 -KAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEG-DYESRLRVNVPGLFNVYNAMA 305

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           AAG+C  +G+    V   LE + V  GR E V  +++   I VDYAH + S+E +L  +R
Sbjct: 306 AAGVCSCLGLSKERVAHALEHMQV-DGRMEIVYKSAKCTVI-VDYAHNAVSMESLLMTLR 363

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                R++VVFGCGG+R + +R  MG+I   LAD++I+T DN R E    I A+I  G+ 
Sbjct: 364 DYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIITADNSRFEKTSDILADIKTGLS 423

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                FIE  +R EAI  ++      D++ + GKGHE
Sbjct: 424 RTEGKFIEIPDRREAIEYSLSHAQDGDIIAIIGKGHE 460


>gi|330469294|ref|YP_004407037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
 gi|328812265|gb|AEB46437.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
          Length = 497

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 231/478 (48%), Gaps = 41/478 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI-------- 64
           +L  +L++ P    +  +  V+  S  +  G ++ A+ G +  G  F+  A         
Sbjct: 8   DLAARLAVAPPTTVDATVTGVTHASGEVHPGDLYAALPGARRHGAEFVADAAAAGAVAVL 67

Query: 65  --AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
             A GAE   +++ Y L           P LVV + R  L   AS +YG   E   ++ V
Sbjct: 68  TDAAGAE---LAAGYGL-----------PTLVVADPRAVLGTLASAVYGDPTEKLTVIGV 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S A  V+   + +G ++  IG   T +     D+  TTP    L   L+    
Sbjct: 114 TGTAGKTSTAYLVESGLRAAGHTTGLIGTVETRLGDLVLDSVRTTPEATDLHAMLAAALE 173

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVT V +E SSH L   R+ G++   G +TN G DH+D+H     YF AK RLF+    
Sbjct: 174 RGVTAVVMEVSSHALAMGRVGGVRFDVGGWTNFGSDHLDFHADADDYFAAKARLFDGRCA 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGK 298
            E   ++  DD   K + K A        + G        + V      Q+ T+   +G 
Sbjct: 234 HE---VLNHDDPALKALFKPAT---ISYSAAGDPSATWWAEDVNGEGYAQRFTLHGPDGL 287

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    LPG   V NAL+A  + +A G+D+A     +     VPGR E VG      R 
Sbjct: 288 VLDAGVALPGRHNVANALLAVAVLVAAGVDAATAARGVAACGGVPGRLESVGVAGGV-RG 346

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH ++++  +L  +R ++SGR+I V G GGDRD+GKRP MG  A   AD+ +VTDD
Sbjct: 347 VVDYAHKTDAVVAVLAALRELSSGRLICVIGAGGDRDRGKRPAMGAAAAKGADVVLVTDD 406

Query: 419 NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPR+EDP  IRAE++ G          +E   R  AI  A+      DV+ V GKGHE
Sbjct: 407 NPRTEDPATIRAEVLAGAYDAGTRTRIVEVAGRRAAIDEAVRQAEPGDVVAVLGKGHE 464


>gi|68535820|ref|YP_250525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
 gi|68263419|emb|CAI36907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
          Length = 536

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 154/498 (30%), Positives = 230/498 (46%), Gaps = 56/498 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W   ++   +  S+ ++ G +F A+ G K  G  F     A  ++A  V +  + Q    
Sbjct: 19  WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF-----AADSKAAAVLTDAAGQRIID 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSG 141
              +  P +VVDN RK++   A+ +YG HP   L   G +G S   +    V++    SG
Sbjct: 74  DATTPLPCIVVDNVRKWMGPVAAEVYG-HPARQLKTIGITGTSGKTTTSYLVEKALLESG 132

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L    IG T T I+       LTTP    L   L+ + ++GVTH+ +E SSH L   R+ 
Sbjct: 133 LRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHLVMEVSSHALQLGRVH 192

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMK 258
           G+     +FTNL +DH+D+H T + YF AK  LFE       P  A++  +D + + +  
Sbjct: 193 GVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGTAVVCCEDEWGERMRA 252

Query: 259 RAH----------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLF 304
            A             G      G     I   +V A + +Q + +S+ G    ++ D+  
Sbjct: 253 IAAKYSSTVALYPQGGNHEAETGSPVWSIASAEV-APNGRQHIRLSIAGGSEPRELDYSI 311

Query: 305 PLPGEFQVYNALVAAGLCI------AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + G F   N+LVA   CI       +  DS  V + L  +  VPGR + V    +    
Sbjct: 312 GMAGSFNQANSLVALA-CIEAVTGEPLSSDSTAV-QALADVQ-VPGRMQLV-EEGQDFLA 367

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            VDYAH   +++ +L ++       + RI +V G GG+RD  KR IMG+IA +LAD   V
Sbjct: 368 MVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIMGRIAAELADAVFV 427

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------------NRIEAIRTAIEMLNKQ 459
           TDDNPR E+P  IR  I  G    ++K                 +R EAI  A+      
Sbjct: 428 TDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRAEAIAAAVTWARPG 487

Query: 460 DVLVVAGKGHETVHIVTN 477
           D +VVAGKGHE   +V  
Sbjct: 488 DAVVVAGKGHEKGQLVAG 505


>gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
 gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
          Length = 494

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 228/472 (48%), Gaps = 53/472 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L       + 
Sbjct: 22  QVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKL-------KG 74

Query: 89  NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRS------ 140
           N   +VV +T +  SL A  LY    H      VTGT+GK+S+A+ +  I ++       
Sbjct: 75  NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAY 134

Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G + FQ+  T T  +       TTP  + L K +          +++E SSHGL   RL
Sbjct: 135 LGTNGFQVNETKTKGAN------TTPETVALTKKIKEAVDANAEAMTMEVSSHGLTLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL 248

Query: 257 MKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
              A      V + G  ++ +F+           + +  S++G +F+F  P         
Sbjct: 249 ---ASVTPYEVFTYGITHEAQFM----------AKNIKESLQGVEFEFCTPFGSFPVRSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G F + N + A     + G +   ++  + +L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVKPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E IR AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
 gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
          Length = 494

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 231/472 (48%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++++ ++++DSR  + G IFVA  G   D H F    + QG   IVV+     QD    +
Sbjct: 20  DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNRE---QDLKGEV 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140
                 ++V +T +  SL A  L+    H      VTGT+GK+S+A+ +  I ++     
Sbjct: 77  TQ----IIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKSS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +     +G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S+
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSE 246

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
            +   A      V + G      H  +  AI+ ++    S++G  F+F  P         
Sbjct: 247 YL---ASVTPYEVFTYGID----HDAQFKAINVEE----SLQGVKFEFDTPFGSYQVESP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+F + N + A     + G     ++E ++ L  V GR E +  N     I +DYAHT
Sbjct: 296 YVGKFNISNIMAAMIAVWSKGATFEDIIEAVKSLEPVEGRLEVLDPNLPIDLI-IDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVKPFVKQKLIFLVGMAGERDMTKTPEMGSVACH-ADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHSNYIEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIM 465


>gi|260578093|ref|ZP_05846014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603732|gb|EEW16988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
          Length = 536

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 154/498 (30%), Positives = 230/498 (46%), Gaps = 56/498 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W   ++   +  S+ ++ G +F A+ G K  G  F     A  ++A  V +  + Q    
Sbjct: 19  WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF-----AADSKAAAVLTDAAGQRIID 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSG 141
              +  P +VVDN RK++   A+ +YG HP   L   G +G S   +    V++    SG
Sbjct: 74  DAPTPLPCIVVDNVRKWMGPVAAEVYG-HPARQLKTIGITGTSGKTTTSYLVEKALLESG 132

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L    IG T T I+       LTTP    L   L+ + ++GVTH+ +E SSH L   R+ 
Sbjct: 133 LRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHLVMEVSSHALQLGRVH 192

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMK 258
           G+     +FTNL +DH+D+H T + YF AK  LFE       P  A++  +D + + +  
Sbjct: 193 GVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGTAVVCCEDEWGERMRA 252

Query: 259 RAH----------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLF 304
            A             G      G     I   +V A + +Q + +S+ G    ++ D+  
Sbjct: 253 IAAKYSSTVALYPQGGNHEAETGSPVWSIASAEV-APNGRQHIRLSIAGGSEPRELDYSI 311

Query: 305 PLPGEFQVYNALVAAGLCI------AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + G F   N+LVA   CI       +  DS  V + L  +  VPGR + V    +    
Sbjct: 312 GMAGSFNQANSLVALA-CIEAVTGEPLSSDSTAV-QALADVQ-VPGRMQLV-EEGQDFLA 367

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            VDYAH   +++ +L ++       + RI +V G GG+RD  KR IMG+IA +LAD   V
Sbjct: 368 MVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIMGRIAAELADAVFV 427

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------------NRIEAIRTAIEMLNKQ 459
           TDDNPR E+P  IR  I  G    ++K                 +R EAI  A+      
Sbjct: 428 TDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRAEAIAAAVTWARPG 487

Query: 460 DVLVVAGKGHETVHIVTN 477
           D +VVAGKGHE   +V  
Sbjct: 488 DAVVVAGKGHEKGQLVAG 505


>gi|332670122|ref|YP_004453130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
 gi|332339160|gb|AEE45743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
          Length = 526

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/405 (32%), Positives = 194/405 (47%), Gaps = 34/405 (8%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIG 148
           P+LV  + R      A+ +  +    ++ V  T       +  FV    + +  ++  +G
Sbjct: 95  PVLVAPDPRDLAGPLAAHVLDEPARGLVTVGVTGTNGKTTTTYFVDAALRAAHRTTAVLG 154

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKAL----SYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              T+     D  + +P     A AL    +    +G   V++E SSH L   R+ G+  
Sbjct: 155 ---TVELRVGDEAVESPRTTVEAPALQGILALARERGAGAVAMEVSSHALALGRVRGLTF 211

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNA 263
               FTNL RDH+D+H   + YF  K RLF    P+++   ++  DD + + +   A  +
Sbjct: 212 DVVGFTNLQRDHLDFHGDMEGYFRDKARLFA---PEQARRGVVVVDDEWGRRL---AATS 265

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----------LFPLPGEFQVY 313
              V +V       H            + +   G  F              PLPG   V 
Sbjct: 266 PVPVETVATHVGDPHGADADWAVVAADIGLDGVGSTFTLRGPDGTEHAAASPLPGLVNVS 325

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI 372
           NA +A  L    G+D A  ++ +   H +PGR E V     G  +  VDYAHT ++L + 
Sbjct: 326 NAALAIVLAHTAGVDLATAVDAVAHAHEIPGRMERVVERGDGLPLCLVDYAHTPDALVLA 385

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R IT GR+I+VFG  GDRDQGKRPIMG+IA  LAD+ +VTD+NPRSEDP  IRA I
Sbjct: 386 LEAVRPITPGRLILVFGSDGDRDQGKRPIMGQIAARLADVLVVTDENPRSEDPAVIRAAI 445

Query: 433 IHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           + G+      G       +R +AIR A+ +   QD ++V GKGHE
Sbjct: 446 LEGVRAERPSGTDVHEATSRAQAIRDALALATDQDTVIVTGKGHE 490


>gi|172059544|ref|YP_001807196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992061|gb|ACB62980.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 153/482 (31%), Positives = 235/482 (48%), Gaps = 43/482 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +F+    +  D   FI  A+A+GA A++        +  A   +   
Sbjct: 30  QLHADTRSLQAGDVFLGYAVDGADNRAFIADAVARGAAAVLYQP-----EGLAAAPAVPV 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   +++LA  VTGT+GK+S   ++      + L++    P
Sbjct: 85  ALAVPALDQLAGDIASGWYGDPSDSMLAIGVTGTNGKTSCTQWIA-----AALTALHQ-P 138

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 139 CAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGT 198

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH T  AY  AK +LF     +   AI+  DDA    ++++   
Sbjct: 199 AFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AIVNRDDAAGCRLLEKL-- 254

Query: 263 AGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           AG RV ++ Y           + +    VCA        +     D D      G F V 
Sbjct: 255 AG-RVRTIAYGIGDAQTPDADRELVALDVCATATGTAFHLRSSWGDADVEVGTLGAFNVS 313

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371
           N L   G  +A  +     +  + +L  V GR + +G   +     + +DYAHT ++LE 
Sbjct: 314 NLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 373

Query: 372 ILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L  +R I +   GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I
Sbjct: 374 TLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRI 433

Query: 429 RAEIIHG--IPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             ++I G  +P    +  +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D
Sbjct: 434 IDQVIAGMTVPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSD 492

Query: 486 CD 487
            D
Sbjct: 493 QD 494


>gi|118472293|ref|YP_888509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118173580|gb|ABK74476.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 520

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 140/403 (34%), Positives = 197/403 (48%), Gaps = 20/403 (4%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
           + P+LV    R  L   A+ +YG+  E +  V  T       +    +   + +G  +  
Sbjct: 98  DVPVLVHPAPRSVLGEAAAIVYGRPAERLRVVGVTGTSGKTTTTYLAEAGLRAAGRVAGL 157

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I      + LTTP    L   L+ +  +GV  V +E SSH L Q R+DGI   
Sbjct: 158 IGTVGVRIDGTDLPSALTTPEAPALQALLALMVERGVDTVVMEVSSHALAQGRVDGIGFA 217

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-IIYADDAYSKEVMKRAHNAG 264
            G FTNL RDH+D+H T   YF AK RLF+   P  + A +I  DD Y  ++  RA    
Sbjct: 218 VGGFTNLSRDHLDFHPTMADYFEAKARLFDPQSPNHAAAAVICVDDQYGVQMAARAETP- 276

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             V + G    +   K   A    Q+ V +   G        LPG + V NA +A  L  
Sbjct: 277 LTVSTSGAAADWRVEKITTAGPGAQEFVLVDPGGMHHQLGVGLPGRYNVANAALAVALLD 336

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTIT 380
           A+G+        L +   VPGR E +      G+ +   VDYAH   +L+ +L+ +R   
Sbjct: 337 AVGVSPEQAAPGL-RTATVPGRLESIDL----GQDFLALVDYAHKPGALQAVLETLRAAE 391

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
             RI VVFG GGDRD GKR  MG++  +LAD+ +VTDDNPRSEDP  IR+ I+ G     
Sbjct: 392 PRRIAVVFGAGGDRDPGKREPMGRVTAELADLVVVTDDNPRSEDPATIRSAILAGARAVA 451

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                +E G+R  AI  A+      D++++AGKGHE+   V +
Sbjct: 452 SDAEIVEIGDRRAAIDHAVAWAQPGDIVLIAGKGHESGQTVGD 494


>gi|313905225|ref|ZP_07838593.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
 gi|313469978|gb|EFR65312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
          Length = 496

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 154/511 (30%), Positives = 245/511 (47%), Gaps = 54/511 (10%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+   L+  L    +Q  E R+I  V  DSR    G +FV I G   DGH F P+  ++G
Sbjct: 3   KNLKTLLQGLEYEILQGDENREIESVIYDSRKAAEGCLFVCIPGAVVDGHSFAPEVASKG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V +A         + +   ++ V+N+R+ L+L ++  +  HP   L   G +G  
Sbjct: 63  AAALIVETAVD-------VPAGVTVVKVENSRRALALISAEWF-DHPAKKLKTIGITGTK 114

Query: 128 SV---ASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQG 181
                +  VQ I   +G     IG   TI+        N  TTP    + +  + +   G
Sbjct: 115 GKTTTSYMVQSILNAAGHKCGLIGTIETITGKRVIPSPN--TTPISYLVNEYFAEMVEAG 172

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLP 239
           +  V +E SS  L   R+ GI    G FTNLG+DHI  + H+  + Y  +K +LF++   
Sbjct: 173 LDSVVMEVSSQALKYDRVTGIHFDFGIFTNLGQDHIGPNEHEDFEDYLASKKKLFDQC-- 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI------------HN 287
             +  I+  DD     +++    A C  L      +   L+   A+              
Sbjct: 231 --TIGIVNRDDKLFDRIVE---GAACSKLETYGFAEEASLRATDAMMLCKPGYLGIRYQT 285

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  V I VE         +PG+F VYN+L A  +C   G+    +++ L +  V  GR E
Sbjct: 286 EGLVNIPVE-------VDIPGKFTVYNSLAAIAVCHHFGVTEEEIMKALPQARV-KGRVE 337

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V  + +   + +DYAH + +LE +L  +R     R++ +FGCGG+RD+ +R  MG+++ 
Sbjct: 338 MVKVSDKF-TLMIDYAHNAMALESLLSTLREYHPARLVCLFGCGGNRDRERRFSMGEVSG 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLV 463
            +AD  I+T DNPR E+P+ I  +I+ GI      +    +R EAI  AI      D++V
Sbjct: 397 KMADFTIITSDNPRFEEPQAIIDDIVTGIKKTDGHYTTIVDRKEAIAWAIHNGEPGDIIV 456

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDI-IREIL 493
           +AGKGHE   I+ +  KK  +D  + I EIL
Sbjct: 457 LAGKGHEDYQIIKD--KKYPMDERVLIAEIL 485


>gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
 gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
          Length = 493

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 154/499 (30%), Positives = 235/499 (47%), Gaps = 48/499 (9%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS    Q  E +I  +  DSR  +   I+  + G   DGH F+   IA+G +AIV +  
Sbjct: 9   KLSEMFEQAPEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFVEDVIAKGVKAIVHAKP 68

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFV 133
                    +      + V+N  + L+  AS  Y +HP     +  VTGT+GKS++ S +
Sbjct: 69  IE------HMHKGVAYIQVENVNRTLNRIASLFY-QHPSRYMKVFGVTGTNGKSTITSII 121

Query: 134 QQI------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           Q +      C   G  + + G      S      LTTP PI + K+++ + + G+   ++
Sbjct: 122 QDVYSHFHPCGYIGTIAIRYGDVELPPS------LTTPDPILIHKSMADMRAAGMEACAL 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL+  R+  +      F+NL  DH+D+H T + Y  AK +LF   L  +  A++ 
Sbjct: 176 EVSSHGLELGRVMSVDFDIAIFSNLTYDHLDFHGTIENYLEAKKKLFTN-LKSDGVAVLN 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            DDAY +     A     R+++ G      Y+   I ++      +  Q T+    K + 
Sbjct: 235 RDDAYYQAF---ADCTNGRLVTYGIKHDSDYRAMDIQIQT-----DGSQFTLLHHEKSYT 286

Query: 302 FLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               L   + +YN L A AG+C A GI    +L +L  +  + GR E +        I V
Sbjct: 287 IKTNLVAMYNIYNLLGAIAGMCEA-GIAIEDMLPYLASIKQIEGRMERIDEGQLFNVI-V 344

Query: 361 DYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           D+AHT + LE + +  + IT     II VFG  G RD  KR + G+IA    D  I+T+D
Sbjct: 345 DFAHTPDGLEKVFEYAKDITKEGHSIIAVFGSAGKRDTKKRKVFGEIASKYCDSIILTED 404

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +PR ED  +I  EI  GI      FIE  +R  AIR AIE     D +++ GKG E    
Sbjct: 405 DPRDEDAREIANEIKEGIKDTKNIFIE--DRYNAIRQAIESAGAYDTVLILGKGDEVFMY 462

Query: 475 VTNGEKKMSVDCDIIREIL 493
              G +    D ++ RE +
Sbjct: 463 REFGREPWLGDHNVARECI 481


>gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Staphylococcus epidermidis FRI909]
          Length = 494

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 227/470 (48%), Gaps = 49/470 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L       + 
Sbjct: 22  QVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKL-------KG 74

Query: 89  NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRS------ 140
           N   +VV +T +  SL A  LY    H      VTGT+GK+S+A+ +  I ++       
Sbjct: 75  NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAY 134

Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G + FQ+  T T  +       TTP  + L K +          +++E SSHGL   RL
Sbjct: 135 LGTNGFQVNETKTKGAN------TTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--------- 307
              A      V + G      H  +  A + K+    S++G +F+F  P           
Sbjct: 249 ---ASVTPYEVFTYG----ITHEAQFMAKNIKE----SLQGVEFEFFTPFGSFPVRSPYV 297

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N + A     + G +   ++  + +L  V GR E +   S    + +DYAHT++
Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRLEVLDP-SLPIDLIIDYAHTAD 356

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ 
Sbjct: 357 GMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDPKM 415

Query: 428 IRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + AE+  G     +IE  +R E IR AI++    D +V+A KG E   I+
Sbjct: 416 LTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii L2-6]
          Length = 492

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 224/460 (48%), Gaps = 29/460 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I ++  DSR    G +FV IVG + D H +  Q +A G  A+VV       D   + 
Sbjct: 20  ELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYAAQCVADGVTALVVQ-----HDIDLST 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                +L V+++R  L+L +  L+G       ++ VTGT GK++    ++ + + +G   
Sbjct: 75  VPGAAVLKVESSRYALALMSGNLFGNPSRRMTMIGVTGTKGKTTTTHMIKSVLEAAGRKV 134

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG          Q+   TTP    L K        G     +E SS GL   R+ GI 
Sbjct: 135 GMIGTNGIYFLGHHQETANTTPESYELQKTFREFLDAGCDTALMEVSSQGLMMDRVAGIH 194

Query: 204 LIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
              G FTNL  DHI    H+T + Y + K +LF+      +  ++  DD  + E +   H
Sbjct: 195 YDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFKRC----TTGVVNIDDE-NTEALLEGH 249

Query: 262 NAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALV 317
              C++++ G   K  +     ++   H+   V   V GKD  D    +PGEF VYNAL 
Sbjct: 250 T--CKLVTYGCSEKADYRAGTYQLLRTHDFLGVRFHVSGKDDMDVKVNMPGEFSVYNALA 307

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   +G+    + E L +  VV GR E V   SR   I +DYAH   S E +L  +R
Sbjct: 308 ALTVGKVLGLPDEAIHEGLGRC-VVKGRVELVPI-SRKFTILLDYAHNEVSTESLLTTLR 365

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                R++VVFGCGG+R + +R  MG+I   +AD +I+T+DN R E  E I A+I  G+ 
Sbjct: 366 AYEPHRLVVVFGCGGNRSKLRRYGMGEICARMADFSILTEDNNRFEKVEDILADIRVGMN 425

Query: 437 -----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                  F+E  +R++A+  A++   + D++ V GKGHET
Sbjct: 426 KGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHET 465


>gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 483

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 151/490 (30%), Positives = 242/490 (49%), Gaps = 55/490 (11%)

Query: 10  DFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           D  EL++  Q  I+  + R  ++  ++ DSR +  G IF+A  G + DG+ F   A+A G
Sbjct: 2   DLKELLHGVQAKIY-GKVRPLEVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFAADALANG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AI  S           I  N   L  + + K+    +S+L+       + VTGT+GK+
Sbjct: 61  AIAIASSLYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLH------TIGVTGTNGKT 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQ 180
           +V   ++ +     L S+Q  P+  + +           +  TTP+P  L K L+ +  Q
Sbjct: 115 TVTCLIKAL-----LDSYQ-KPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQ 168

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS GL   R+          TN+  DH+D+H T +AY  AK +LF  L+P 
Sbjct: 169 NRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFEAYVAAKAKLF-SLVPP 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLK----KVCAIHNKQQ 290
               +I  D  Y+ + ++   +A   V++ G      Y+   I L     K   ++  Q+
Sbjct: 228 SGMVVINTDSPYASQCIE---SAKAPVITYGIESAADYRATDIQLSSSGTKYTLVYGDQK 284

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  S       F+    G++ VYN L A + +  ++  D   +LE +      PGR + V
Sbjct: 285 IACSSS-----FI----GKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPV 335

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                   +Y+DYAHT ++L+ +L  +  +    GR+IVVFGCGGDRD+ KR +M ++ +
Sbjct: 336 LMGP--CPVYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQV-V 392

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    A+VT DNPRSE PE I  EI  G      FIE  +R +AI  A+ + + +D++++
Sbjct: 393 ERYGFAVVTSDNPRSEPPEDIVNEICDGFYSKNYFIEI-DRKQAITYALSIASDRDIVLI 451

Query: 465 AGKGHETVHI 474
           AGKGHE   I
Sbjct: 452 AGKGHEAYQI 461


>gi|30316061|sp|Q8NNN0|MURE_CORGL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21324933|dbj|BAB99556.1| UDP-N-acetylmuramyl tripeptide synthase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 517

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 224/465 (48%), Gaps = 21/465 (4%)

Query: 27  ERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           E+ I  +  DS  +  +  IF A+ G +  G  F     A  A AI+  +A  L+  +  
Sbjct: 26  EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAILTDAA-GLEVLNEA 84

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
             +  P++VVD+ R  L   +S +YG   ++  ++ VTGTSGK++ +  +++    +G  
Sbjct: 85  GETR-PVIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGKTTTSYLLEKGLMEAGHK 143

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG T T I       +LTTP    L    + +   GVTHV +E SSH L   R+ G 
Sbjct: 144 VGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVSSHALSLGRVAGS 203

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261
                +FTNL +DH+D+H T   YF+AK   F    P      ++  DD++ + +   A 
Sbjct: 204 HFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVADKQVVCVDDSWGQRMASVAA 263

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAG 320
           +    V ++G +  F       +    Q   I+    + +     LPG F V NA +A  
Sbjct: 264 DVQT-VSTLGQEADFSATDINVSDSGAQSFKINAPSNQSYQVELALPGAFNVANATLAFA 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +G+D       + K+  VPGR E +    +     VDYAH   ++  +L  +RT  
Sbjct: 323 AAARVGVDGEAFARGMSKV-AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQI 380

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            GR+ VV G GGDRD  KR  MG+++   AD+ IVTDDNPRSE P  IRA +  G     
Sbjct: 381 DGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTDDNPRSEVPATIRAAVTAGAQQGA 440

Query: 439 --------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                    +E G+R EAIR  +E     D +VVAGKGHE   +V
Sbjct: 441 SESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKGHEVGQLV 485


>gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te
           ligase mure [Rhodococcus equi 103S]
 gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
           6-diaminopimelate ligase MurE [Rhodococcus equi 103S]
          Length = 501

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 153/499 (30%), Positives = 235/499 (47%), Gaps = 54/499 (10%)

Query: 1   MKLQDLIYKDFP----ELINQL-------SIFPMQWRERKINEVSSDSRHIQAGWIFVAI 49
           M L+DL     P    E++++L       +  P+  R R I  V  DSR ++ G ++ A+
Sbjct: 1   MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDR-RVITGVCQDSRRVRPGDLYAAL 59

Query: 50  VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
            G +  G  F  +A A+GA A+       L D  + I    P +VVD+ R  L   A+  
Sbjct: 60  PGRRHHGADFASEASARGAVAM-------LSDRPSDI---VPTVVVDDPRVALGPLAAWA 109

Query: 110 YGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRLTTPS 166
           YG      ++  VTGT+GK+S    ++     +GL +  + G T      A+    TTP 
Sbjct: 110 YGNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTARPATRTTPE 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L ++      +GV  V++E SSHGL +HR+DG +   G FTNL RDH+DYH   +AY
Sbjct: 170 ACELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAY 229

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           + AK RLF   L + +   I  DD Y + +            S    G  ++   V A  
Sbjct: 230 YTAKARLFGRDLCERAAVCI--DDDYGRRLAGEVAVPHL-TFSARDPGADVYATTVRAQR 286

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                T+   G+       + G  QV NA+ A       GID    +  +E L  +PGR 
Sbjct: 287 WGSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRL 346

Query: 347 EFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           E V      G+ +   VDY H +     +   +R++T GRI+VV G  G+RD GKR  +G
Sbjct: 347 ERVDV----GQPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLG 402

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIR------------AEIIHGIPGFIEKGNRIEAIRT 451
             A   A++ +VTD++  S+D   +R            AE++  IP      +R EAI  
Sbjct: 403 FTAARYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVV-IP------DRGEAIAV 455

Query: 452 AIEMLNKQDVLVVAGKGHE 470
           A+++    D +++AG+GH+
Sbjct: 456 AVDLAGAGDTVLLAGRGHD 474


>gi|171316202|ref|ZP_02905425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
 gi|171098616|gb|EDT43413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
          Length = 512

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 152/484 (31%), Positives = 240/484 (49%), Gaps = 47/484 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +F+    +  D   FI  A+A GA A++    Y  +  +A      P
Sbjct: 30  QLHADTRSLQAGDVFLGYAVDGADNRAFIADAVAGGAAAVL----YQPEGLAAA--PAMP 83

Query: 92  I-LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + L V    +     AS  YG   +++LA  VTGT+GK+S   ++      + L++    
Sbjct: 84  VALAVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIA-----AALTALHQ- 137

Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           P + I +              TTP    L ++L+ L+  G   V++E SSH L Q R++G
Sbjct: 138 PCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLNEAGAKAVAMEVSSHALHQGRVNG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                  FTNL +DH+DYH+T  AY  AK +LF     +   A++  DDA    ++++  
Sbjct: 198 TAFDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGCRLLEKLA 255

Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQ 311
               RV ++ Y     QG     +++ A+  +   T     +     D        G F 
Sbjct: 256 G---RVRTIAYGIGDAQGPDAD-RELVALDVRATATGTAFRLRSSWGDAHVEVGTLGAFN 311

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369
           V N L   G  +A  +     +  + +L  V GR + +G   +     + +DYAHT ++L
Sbjct: 312 VSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDAL 371

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           E  L  +R I +   GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+
Sbjct: 372 EKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQ 431

Query: 427 KIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +I  ++I G+  P    +  +R  AI  A+    ++DV+V+AGKGHE    +  G+K+  
Sbjct: 432 RIIDQVIAGMTAPDHARRIEDRASAILQAVRGAVREDVVVLAGKGHEATQEIM-GKKRAF 490

Query: 484 VDCD 487
            D D
Sbjct: 491 SDQD 494


>gi|295104216|emb|CBL01760.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii SL3/3]
          Length = 492

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 152/487 (31%), Positives = 242/487 (49%), Gaps = 38/487 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +  P  + Q S+      + +I ++  DSR    G +FV IVG + D H F 
Sbjct: 1   MKLEQLM-EGVPFTLVQGSL------DTEIADIIYDSRKAAPGLLFVCIVGTQRDSHAFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
               A+G  A+V+       D   +      ++ V+++R  ++L ++ L+G       ++
Sbjct: 54  ADCAAKGVSALVIQ-----HDIDLSALPGVTVVKVESSRYAMALMSANLFGNPARQMTMI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTPSPIYLAKALSY 176
            VTGT GK++    ++ + + +G     IG T+ I      +D   TTP    L K    
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIG-TNGIYYMGRHKDTANTTPESYELQKTFRE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
               G     +E SS GL   R+ G+    G FTNL  DHI    H+T + Y + K +LF
Sbjct: 168 FLDAGCDTALMEVSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---KVCAIHNKQQV 291
           +         ++  DD  +  +++  H   C++++ G   K  + +   K+   H+   V
Sbjct: 228 KRC----DVGVVNIDDENTAALLE-GHT--CKLVTYGRDEKADYRETGYKLLRTHDFLGV 280

Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              V GKD  D    +PGEF VYNAL A  +   +G+  A + + L K  VV GR E V 
Sbjct: 281 AFHVTGKDEMDVKVNMPGEFSVYNALAALAVGKVLGLPDAAIHDGLGKC-VVKGRVELVP 339

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             S+   I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +A
Sbjct: 340 I-SKKFTILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMA 398

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D +I+T+DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V
Sbjct: 399 DFSILTEDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAV 458

Query: 465 AGKGHET 471
            GKGHET
Sbjct: 459 IGKGHET 465


>gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
 gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
          Length = 496

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 236/477 (49%), Gaps = 37/477 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIR 87
           +I ++ +D+R++  G  FVAI G + DGH  + Q  A GA+ +VV     + QD+  +  
Sbjct: 23  EITQLVNDTRNLVPGCAFVAIKGLQFDGHTAVDQVAAAGAKLMVVEVLPENWQDYPLSF- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 +V +T +  +L A++ +G+  E  N++AVTGT+GK++++S +  +  R G  + 
Sbjct: 82  -----FLVPSTFRAQALLANQFFGRPTEQLNVVAVTGTNGKTTISSLISDLLMRLGHKTG 136

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     +      +  TTP+ + L +  + + S G     +EASSH L   RL    +
Sbjct: 137 LIGTLHYKVDQTYYPSINTTPNALALQQLFAEMVSVGCQDALIEASSHALALGRLWATDI 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK---ESP--AIIYADDAYSKEVMKR 259
               FTNL R+H+D+H+T + Y  AK  LF +L  K   E P  AII ADD Y+  +M +
Sbjct: 197 DCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQLGQKFAGEGPRLAIINADDPYAS-IMMQ 255

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A +A     S+       +  ++      Q   +    + +  + P+ G + V N  +AA
Sbjct: 256 ATSADVLTYSLEDPKASAYADQLAVQDGNQTFRLHYRNQTYQVVSPMLGAYNVAN-FMAA 314

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--------IYVDYAHTSNSLEM 371
            LC+   +D      H++   VV     F G   R  R        + VD+AHT +++E 
Sbjct: 315 FLCL---VD----YYHVQPQTVVDLMLSFGGVEGRMQRLDLGQEFQVVVDFAHTPDAIER 367

Query: 372 ILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L+ ++  +  R++ + G  GG+RD G RP +G    + +D  I T DNPR E   KI A
Sbjct: 368 VLQELKAQSPKRLVTIIGHSGGNRDSGARPEIGDKVFEYSDWIIFTADNPRHEPVAKICA 427

Query: 431 EII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           E+I  H    +    +R  AI   I      D+LV AGKG E   I+  G+ K+  D
Sbjct: 428 ELIGNHDEVPYQVIEDRKAAIDYVISQAQAGDLLVFAGKGSEPYQII--GDDKLPYD 482


>gi|319949411|ref|ZP_08023474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
 gi|319436923|gb|EFV91980.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
          Length = 436

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/401 (32%), Positives = 194/401 (48%), Gaps = 16/401 (3%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G +F A+ G +  G  F   A+  GA A++        +  A +    P+LV    R  L
Sbjct: 39  GILFAALPGTRVHGASFGATAVEAGASAVLTDPEGI--ELMAAVAGRLPVLVHPAPRAVL 96

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT-STISSFAQD 159
              ++ + G    ++  V  T       +   V+   +  G  +  IG T S +   A  
Sbjct: 97  GAVSAAVTGDPSADLDVVGITGTSGKTTTTYLVEAALEGCGHVAGLIGTTGSRVDGRALP 156

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           +RLTTP        L+ + + G   V+ E SSH L   R+DG++   G+F NL +DH+D+
Sbjct: 157 SRLTTPEAPEFQALLARMRAAGARAVAAEVSSHALRLGRVDGVRFAVGAFLNLSQDHLDF 216

Query: 220 HQTQQAYFNAKMRLFE-------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           H +   YF AK RLF+        + P E  A++  DD + + ++    +A         
Sbjct: 217 HPSMDDYFRAKARLFDVEADPGSAVWPAER-AVVVIDDEWGRRLVGMRPDAVTVSAEPDA 275

Query: 273 QGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +   +      + Q+ T+    G   D   PL G F V NALVA  +  A+G D A 
Sbjct: 276 DADWTAGESTPTDRDTQEFTVRGPRGLTVDVELPLMGRFNVANALVALAIVDALGGDVAA 335

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
               L ++ V PGR E V    +  R+ VDYAH   ++  +L+++R  T GR+ VV G G
Sbjct: 336 AAAGLMRVRV-PGRLEPV-VRGQDFRVLVDYAHKPGAVAAVLRSVRAQTEGRVAVVLGAG 393

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           GDRD GKRP MG  A ++AD+ +VTDDNPRSEDP  IRA +
Sbjct: 394 GDRDPGKRPKMGAAAAEIADLVVVTDDNPRSEDPAAIRAAV 434


>gi|19553363|ref|NP_601365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62391002|ref|YP_226404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|145296125|ref|YP_001138946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum R]
 gi|41326341|emb|CAF20503.1| PROBABLE UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2 [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846045|dbj|BAF55044.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 521

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 224/466 (48%), Gaps = 23/466 (4%)

Query: 27  ERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSA 84
           E+ I  +  DS  +  +  IF A+ G +  G  F     A  A AI+  +A   + + + 
Sbjct: 30  EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAILTDAAGLEVLNEAG 89

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
             R   P++VVD+ R  L   +S +YG   ++  ++ VTGTSGK++ +  +++    +G 
Sbjct: 90  ETR---PVIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGKTTTSYLLEKGLMEAGH 146

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               IG T T I       +LTTP    L    + +   GVTHV +E SSH L   R+ G
Sbjct: 147 KVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVSSHALSLGRVAG 206

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRA 260
                 +FTNL +DH+D+H T   YF+AK   F    P      ++  DD++ + +   A
Sbjct: 207 SHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVADKQVVCVDDSWGQRMASVA 266

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAA 319
            +    V ++G +  F       +    Q   I+    + +     LPG F V NA +A 
Sbjct: 267 ADVQT-VSTLGQEADFSATDINVSDSGAQSFKINAPSNQSYQVELALPGAFNVANATLAF 325

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                +G+D       + K+  VPGR E +    +     VDYAH   ++  +L  +RT 
Sbjct: 326 AAAARVGVDGEAFARGMSKV-AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQ 383

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR+ VV G GGDRD  KR  MG+++   AD+ IVTDDNPRSE P  IRA +  G    
Sbjct: 384 IDGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTDDNPRSEVPATIRAAVTAGAQQG 443

Query: 439 ---------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                     +E G+R EAIR  +E     D +VVAGKGHE   +V
Sbjct: 444 ASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKGHEVGQLV 489


>gi|27904704|ref|NP_777830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29427601|sp|P59419|MURE_BUCBP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27904101|gb|AAO26935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 508

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/471 (29%), Positives = 234/471 (49%), Gaps = 34/471 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVG---NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-AT 85
           I+ + SDSR ++ G++F  +     N+ + H+    AI  GA+ I+  +    ++ +   
Sbjct: 26  ISGIQSDSRLVKPGYLFCVLKKKNINETNKHMI--HAIKNGAKIILYDTKQKFKNGTLKK 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
           I ++ PI+      K L     + Y  H EN   ++ +TGT+GKS+    V Q    + L
Sbjct: 84  IINHVPIIYFFKLSKNLPQILKKYY--HFENNFTLIGITGTNGKSTTTHIVSQ---WANL 138

Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            + +IG   T+     +N      TT S   + + L ++  Q +   ++E SSHG+ QHR
Sbjct: 139 LNVKIGIMGTLGHGINNNLKKTDNTTESSANIHQFLYHMLKQNIKTFAIEISSHGIVQHR 198

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +       TN+  +H+DYH+T   Y NAK   F +     +  II ADD  +K  +K
Sbjct: 199 IEQLPFKIAILTNITPEHLDYHRTMDNYINAKKAFFFKY--NINTLIINADDLIAKTWIK 256

Query: 259 RAHNAGCRVLSVGYQG-------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + ++     ++   Q        K+IH  K+    N   +  +           L G F 
Sbjct: 257 KLNHKNVITITTKDQNFNSISPKKWIHANKIIQKQNCTNIHFNSSWGHGILNSTLIGHFN 316

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    + +      +++  + +  + GR E +   ++  ++ +DYAH +N L+ 
Sbjct: 317 VINILLALATLLELNYPITDLVKVCKYIKTISGRMEHIHIVNKP-KVIIDYAHNTNGLKN 375

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L  ++ I    +I  +FGCGGDRD+ KRP MG IA  ++D  I+T+DNPR+E P KI  
Sbjct: 376 LLSTLKEIFNKKKIWCIFGCGGDRDKTKRPYMGSIAEKMSDQVILTNDNPRNEHPLKIIK 435

Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I+ G   F  K     NR  AI+ A+   +K+D++VVAGKGHE   I+ N
Sbjct: 436 NILSGCK-FKNKIRIIPNREHAIKFAVNNADKEDIIVVAGKGHEKYQIINN 485


>gi|238026127|ref|YP_002910358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
 gi|237875321|gb|ACR27654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
          Length = 515

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 155/490 (31%), Positives = 234/490 (47%), Gaps = 56/490 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +F+A   +  D    +  A+++GA A++V       +  A I +  P
Sbjct: 30  QLHADTRSLRAGDVFLAYAVDGADNRPHLANALSRGAAAVLVQP-----EGYAGIDALDP 84

Query: 92  I--LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   +   ++ VTGT+GK+S   ++      + L++ + 
Sbjct: 85  AVALAVPGLDALAGEIASGWYGDPSDAMFVIGVTGTNGKTSCTQWIA-----TALTALRR 139

Query: 148 GPTSTISSFAQD--NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            P + I +       RL     TTP    L ++L+ L   G   V++E SSH L Q R++
Sbjct: 140 -PCAVIGTLGSGMPGRLVATGFTTPDAPQLQRSLAQLRDDGAQAVAMEVSSHALHQGRVN 198

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G       FTNL +DH+DYH+T +AY  AK +LF     +   AII  DDA    ++  A
Sbjct: 199 GTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRH--AIINRDDAAGGRLL--A 254

Query: 261 HNAGCRVLSVGY----------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             AG RV +V Y            + +   +V A        ++    D D      G F
Sbjct: 255 TLAG-RVRTVAYGIGARADAPEADRTLIASEVRATATGTAFRLTSSWGDADLEVGTLGLF 313

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-------YVDYA 363
            V N L      +   +     L  + +L  V GR + +G     GRI        VDYA
Sbjct: 314 NVSNLLAVLATLLVADLPFDAALAEMRRLESVNGRMQRLG-----GRIDHDEPLVVVDYA 368

Query: 364 HTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           HT ++LE  L+ +R I   R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNP
Sbjct: 369 HTPDALEKTLEALRPIAEARGGALVCMFGCGGDRDTTKRPLMGAIAERLADRVVVTSDNP 428

Query: 421 RSEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE P  I  +I   +H   G +   +R  AI  A+    ++DV+++AGKGHE    +  
Sbjct: 429 RSEAPLAIIEQIASGMHAPDGALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM- 487

Query: 478 GEKKMSVDCD 487
           G+K+   D D
Sbjct: 488 GKKRQFSDQD 497


>gi|160944894|ref|ZP_02092121.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444078|gb|EDP21082.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
          Length = 492

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 229/459 (49%), Gaps = 31/459 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I ++  DSR    G +FV IVG + D H F     A+G  A+V+       D   +   
Sbjct: 22  EIADIIYDSRKAAPGLLFVCIVGTQRDSHTFAADCAAKGVSALVIQ-----HDIDLSTLP 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              ++ V+++R  ++L ++ L+G       ++ VTGT GK++    ++ + + +G     
Sbjct: 77  GVTVVKVESSRYAMALMSANLFGNPARQMTMIGVTGTKGKTTTTHMIKSVLEAAGRKVGM 136

Query: 147 IGPTSTISSFA--QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG T+ I      +D   TTP    L K        G     +E SS GL   R+ G+  
Sbjct: 137 IG-TNGIYYMGRHKDTANTTPESYELQKTFREFLDAGCDTALMEVSSQGLMMDRVAGVHY 195

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G FTNL  DHI    H+T + Y + K +LF+         ++  DD  +  +++  H 
Sbjct: 196 DVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFKRC----DVGVVNIDDENTAALLE-GHT 250

Query: 263 AGCRVLSVGYQGKFIHLK---KVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318
             C++++ G   K  + +   K+   H+   V   V GKD  D    +PGEF VYNAL A
Sbjct: 251 --CKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTGKDEMDVKVNMPGEFSVYNALAA 308

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G+  A + + L K  VV GR E V   S+   I +DYAH   S E +L  +R 
Sbjct: 309 LAVGKVLGLPDAAIHDGLGKC-VVKGRVELVPI-SKKFTILLDYAHNEVSTESLLTTLRA 366

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
               R++VVFGCGG+R + +R  MG+I   +AD +I+T+DN R E  E I A+I  G+  
Sbjct: 367 YKPHRLVVVFGCGGNRSKLRRYGMGEICAKMADFSILTEDNNRFEKVEDIIADIREGMNK 426

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 F+E  +R++A+  A++   + D++ V GKGHET
Sbjct: 427 GNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHET 465


>gi|291549494|emb|CBL25756.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus torques
           L2-14]
          Length = 488

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/459 (30%), Positives = 233/459 (50%), Gaps = 37/459 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  + +DSR ++ G +FV I G   DGH +     A+        +A  + +    +  
Sbjct: 22  EVTTLINDSRKVEEGSVFVCISGAVSDGHKYAADVAAK-------GAAAVVVEKDVEVPE 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
           N  ++ V++TR  L+L ++  +G +P + + V G +G     +    ++ I + +G    
Sbjct: 75  NVTVIKVEDTRYALALMSAAYFG-YPADKMKVIGITGTKGKTTTTYMIKSILEETG---H 130

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI +   D ++    TTP    + K  + +   G   V +E SS GL  HR  G
Sbjct: 131 KVGLIGTIEAIIGDKKIPSCNTTPESYTIHKYFAEMVEAGCDCVVMEVSSQGLMLHRTAG 190

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           I    G FTNLGRDHI  + H+    Y   K  LF++        I   DD Y K+V K 
Sbjct: 191 IPFEIGIFTNLGRDHIGPNEHKDFDDYKRCKGLLFKQC----KLGIANVDDKYFKDVFK- 245

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEG-KDFDFLFPLPGEFQVYNA 315
              + C++ + G+  +  +  + V  +     + ++  V G  DFD    +PG+F VYN+
Sbjct: 246 --GSTCKIETFGFSPEADLRAENVELVSRPGYLGVAYHVAGVMDFDVEIDVPGKFSVYNS 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +C    +   ++ + L+K  V  GR E +   S    + +DYAH + SLE +L  
Sbjct: 304 LTAISVCRHFQVPVEMIKDALKKAKV-KGRIEMIKV-SDDFTLMIDYAHNAMSLESLLTT 361

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNPR E+P+ I  +I  G
Sbjct: 362 LKEYNPKRLVCLFGCGGNRSKDRRFEMGEVSGRLADLTIITSDNPRFEEPQDIINDIKTG 421

Query: 436 IP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I      ++E  +R EAI+ AIE     DV+V+AGKGHE
Sbjct: 422 IAKTDGKYVEICDRKEAIKYAIEHGEPGDVIVLAGKGHE 460


>gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 537

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 144/479 (30%), Positives = 229/479 (47%), Gaps = 32/479 (6%)

Query: 13  ELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL +QL +  P       +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A+
Sbjct: 19  ELADQLGVDAPEASEGAAVTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAVAV 78

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSV 129
           +   A + +  +    +  P+L VDN R  +   A+ +YG+   ++L   +TGTSGK++ 
Sbjct: 79  LTDPAGAERAAA----TGLPVLAVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKTTT 134

Query: 130 ASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184
           A  ++   + +      + G   T+ +   D R+    TTP    L    + +  + V  
Sbjct: 135 AYLIEGGLKAAAKHDGGLTGLIGTVETRIGDERIKSERTTPEATDLQALFAVMRERDVHS 194

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF +   +    
Sbjct: 195 VVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKA--RSRAG 252

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFL 303
           +I  DD Y + +++++        + G+         V           +   G+     
Sbjct: 253 VINYDDEYGRRLIEQSEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAVGPNGESVRAA 312

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
            PLPG F V NAL A       GID     + +  +  VPGR E V      G+ Y   V
Sbjct: 313 APLPGPFNVANALAAVVALAVAGIDPQTAADGIAAVPGVPGRLERVDV----GQPYLAVV 368

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH ++++E +L+ +R +T G++  V GCGGDRD+ KR  MG      +D A++T DNP
Sbjct: 369 DYAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGAAVARYSDTAVLTSDNP 428

Query: 421 RSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           RSEDP  I A ++ G   +P   E+G      +R  AI  A+      D ++VAGKGHE
Sbjct: 429 RSEDPLAILAAMLAGAAEVPAH-ERGDVLVEEDRANAIAAAVARAEPGDTVIVAGKGHE 486


>gi|78065116|ref|YP_367885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
 gi|77965861|gb|ABB07241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
          Length = 512

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 151/482 (31%), Positives = 233/482 (48%), Gaps = 43/482 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++        +  A   +   
Sbjct: 30  QLHADTRSLKAGDVFVAYAVDGADNRAFIADAVARGAAAVLYQP-----EGLAAAPAVPV 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   +++LA  VTGT+GK+S   ++      + L++    P
Sbjct: 85  ALAVPALDQLAGEIASSWYGDPSDSLLAIGVTGTNGKTSCTQWIA-----AALTALHQ-P 138

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 139 CAVIGTLGTGMPGQLVPTGFTTPDASQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGT 198

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH T  AY  AK +LF     +   A+I  DDA  + ++++   
Sbjct: 199 AFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVINRDDAAGQRLLEKLAG 256

Query: 263 AGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              RV ++ Y           + +    V A        +     D D      G F V 
Sbjct: 257 ---RVRTIAYGIGDASAPDADRELVALDVRATTTGTAFRLRSSWGDADVEVGTLGTFNVS 313

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371
           N L   G  +A  +     L  + +L  V GR + +G   +     + +DYAHT ++LE 
Sbjct: 314 NLLAVLGSLLAADVPFDAALAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 373

Query: 372 ILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L  +R I +   GR++ +FGCGGDRD  KRP+MG IA   AD  +VT DNPRSEDP++I
Sbjct: 374 TLDALRPIATARGGRLVCMFGCGGDRDATKRPLMGAIAERFADETVVTSDNPRSEDPQRI 433

Query: 429 RAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+  P    +  +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D
Sbjct: 434 IDQIVAGMTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSD 492

Query: 486 CD 487
            D
Sbjct: 493 QD 494


>gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
          Length = 515

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 220/465 (47%), Gaps = 31/465 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR +  G +FVA  G   DGHL+IPQAI +GA A+V       +D +   R  
Sbjct: 25  ITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQAIERGAAAVV------YEDPAWDGRIP 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS-FVQQICQRSGLSSFQIG 148
            P L   N R  L+  A+  YG     +  V  T       + F+  +   +G +   + 
Sbjct: 79  VPALRTPNARAALAPLAAAFYGYPGRQMRVVGITGTDGKTTTTFLTSVALEAGGAVTGLM 138

Query: 149 PTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--QHRLDGI 202
            T         +A D+R +TP    +   L  +   G  +  VEA+SH L    +RL G 
Sbjct: 139 GTVDFKIAGRLWANDSRQSTPEAPEVQALLRDMVHAGCAYAVVEATSHALSARWNRLAGC 198

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---------LPKESPAIIYADDAYS 253
                  TN+ ++H+D+H T + Y   K RLFE L           +   AI+ ADD   
Sbjct: 199 AFDIAVLTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFHDDATPFKQRKIAIVNADDPNH 258

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  +  A     R+    +    +  + V +  +     ++      D    L G+F V+
Sbjct: 259 RMFLDAAPPYAERLTYAIHANADVCARNVRSTRDGLMFRVTTPWGAADAHLRLTGDFNVW 318

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  +  A G+  ++ L  LE++  V GR E +    +   + VDYAHT  + E ++
Sbjct: 319 NALAALTVACAEGVPLSVCLAALERVPGVRGRMERI-EMGQPFTVLVDYAHTPGAFEKLM 377

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R +T G++IVVFG  G+RD+ KRP+ G+IA    D+ ++TD++PR ED E I AEI 
Sbjct: 378 RIVRPLTDGQLIVVFGSAGERDRAKRPLQGEIAGRFCDLVVLTDEDPRLEDREAIIAEIA 437

Query: 434 HGIPGFIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            G+    ++         +R  AIRTA       D++++ GKGHE
Sbjct: 438 VGVEAAGKRIGETCLCIPDRAHAIRTAFARARPGDIVLLLGKGHE 482


>gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis RP62A]
 gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis RP62A]
 gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU028]
 gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 494

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 228/472 (48%), Gaps = 53/472 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L       + 
Sbjct: 22  QVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELEL-------KG 74

Query: 89  NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRS------ 140
           N   +VV +T +  SL A  LY    H      VTGT+GK+S+A+ +  I ++       
Sbjct: 75  NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAY 134

Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G + FQ+  T T  +       TTP  + L K +          +++E SSHGL   RL
Sbjct: 135 LGTNGFQVNETKTKGAN------TTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL 248

Query: 257 MKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
              A      V + G  ++ +F+           + +  S++G +F+F  P         
Sbjct: 249 ---ASVTPYEVFTYGITHEAQFM----------AKNIKESLQGVEFEFCTPFGSFPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G F + N + A     + G +   ++  + +L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E IR AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHNNYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|330815438|ref|YP_004359143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
 gi|327367831|gb|AEA59187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
          Length = 514

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 157/485 (32%), Positives = 234/485 (48%), Gaps = 60/485 (12%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPIL 93
           SDSR +QAG +F+A   +  D    I  A+A+GA A++V    +++    + +    P L
Sbjct: 33  SDSRAVQAGDVFLAYAVDGVDNRSHIAGALARGAAAVLVQPDGFAIDALDSAVTHAVPDL 92

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                       AS  YG   + + AV  TGT+GK+S   ++      + LS+ +  P +
Sbjct: 93  -----GALAGEIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----TALSALRT-PCA 141

Query: 152 TISSFAQD--NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            I +       RL     TTP    L ++L+ L  +G   V++E SSH L Q R++G   
Sbjct: 142 VIGTLGSGMPGRLVATGFTTPDAPQLQRSLAQLRDEGAKAVAMEVSSHALQQGRVNGTAF 201

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH+T +AY  AK +LF     +   A++  DDA    ++  A  AG
Sbjct: 202 DVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRH--AVVNRDDAAGARLL--ATLAG 257

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GEFQ 311
            RV +V Y    I  +      ++Q +   V        F L              G F 
Sbjct: 258 -RVRTVAYG---IDERANAPEADRQLIAHEVRATATGTAFRLESSWGSAEVEVGTLGLFN 313

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-------IYVDYAH 364
           V N L   G  +   +     L  L +L  V GR + +     GGR       + VDYAH
Sbjct: 314 VSNLLAVLGTLLVADVPFEAALAELRRLESVNGRMQRL-----GGRVANDEPLVVVDYAH 368

Query: 365 TSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           T ++LE  L+ +R I   R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPR
Sbjct: 369 TPDALEKTLEALRPIAEARGGALVCMFGCGGDRDATKRPLMGGIAERLADRVVVTSDNPR 428

Query: 422 SEDPEKIRAEIIHGI--PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           SE P  I  +I+ G+  PG  +   +R  AI  A+    ++DV+++AGKGHE    +   
Sbjct: 429 SEPPLAILEQIVAGMKTPGAALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIMGK 488

Query: 479 EKKMS 483
           +++ S
Sbjct: 489 KREFS 493


>gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
 gi|153793974|gb|EDN76394.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
          Length = 491

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 246/477 (51%), Gaps = 36/477 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+ +L    +Q  ++ +I  + +DSR ++ G +FV I G   DGH ++     +GA+
Sbjct: 3   LKQLLERLEYEVVQGSDKIEITTLINDSRKVEEGSVFVCISGAVSDGHQYVADVAKKGAK 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A++V      QD  A   +   ++ V++TR  L+L ++  +G   E +  + +TGT GK+
Sbjct: 63  AVIVQ-----QDVEAP--AGMTVIRVEDTRYALALASAAYFGYPAEKLHIIGITGTKGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           +    ++ I +  G    ++G   TI +   +  +    TTP    + +  + +   G  
Sbjct: 116 TTTYMIKSILEGVG---HKVGLIGTIEAIIGEEVIPAANTTPESYTIHQYFAKMVEAGCD 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241
            V +E SS GL  HR  GI    G FTNLG+DHI  + H+  + Y   K  LF++     
Sbjct: 173 SVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKGLLFQQC---- 228

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS--VEG- 297
              I  ADD Y K+V K   NA C+V + G+ +   +  + V  +     + ++  V G 
Sbjct: 229 RVGIANADDRYFKDVFK---NATCKVETFGFCKEADLRAEDVNLVSRPGYLGVAYHVAGV 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            DFD    +PG F VYN+L A  +C    +    +   L+K  V  GR E V  +     
Sbjct: 286 MDFDVEIDVPGTFSVYNSLTAIAVCRHFDVPKEHIQAALKKAKV-KGRIEMVKVSDEF-T 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T 
Sbjct: 344 LMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTIITS 403

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DNPR E+P+ I  +I  GI      ++E  +R EAIR AI      +V+V+AGKGHE
Sbjct: 404 DNPRFEEPQAIIDDIKVGIEKTDGAYVEIIDRKEAIRYAITHGQTGEVIVLAGKGHE 460


>gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 575

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 153/478 (32%), Positives = 236/478 (49%), Gaps = 37/478 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL  +L   P    E  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA AI+
Sbjct: 68  ELAARLGAGPQDAGE--VTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGAAAIL 125

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130
              A + +  +  +    P+LV D+ R  +   A+ +YG+    +L   +TGTSGK++ A
Sbjct: 126 TDPAGAERAAATGL----PVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTTTA 181

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186
             V+   + +G S+  IG   T+     D R+    TTP    L    + +  +GV  V+
Sbjct: 182 YLVEGGLRGAGRSTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVA 238

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AI 245
           +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF    P+ S   +
Sbjct: 239 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPERSKLGV 295

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304
           +  DD Y + ++  A        + G+       + V     +     I  +G+      
Sbjct: 296 VNFDDEYGRRLVDEASVPVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKA 355

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361
           PLPG F V N L A       GID  +  + +  +  VPGR E +      G+ Y   VD
Sbjct: 356 PLPGPFNVANTLAAIVTLAVAGIDPQIAADGVAGVPGVPGRLERIDA----GQPYLAVVD 411

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH ++++E +L+++R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPR
Sbjct: 412 YAHKTDAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPR 471

Query: 422 SEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470
           SEDP  I A ++ G   +P   E+G+ +       AI  A+      D ++VAGKGHE
Sbjct: 472 SEDPLGILAAMLSGAAEVP-VHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHE 528


>gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 494

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 228/472 (48%), Gaps = 53/472 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L       + 
Sbjct: 22  QVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELEL-------KG 74

Query: 89  NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRS------ 140
           N   +VV +T +  SL A  LY    H      VTGT+GK+S+A+ +  I ++       
Sbjct: 75  NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAY 134

Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G + FQ+  T T  +       TTP  + L K +          +++E SSHGL   RL
Sbjct: 135 LGTNGFQVNETKTKGAN------TTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL 248

Query: 257 MKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
              A      V + G  ++ +F+           + +  S++G +F+F  P         
Sbjct: 249 ---ASVTPYEVFTYGITHEAQFM----------AKNIKESLQGVEFEFCTPFGSFPVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G F + N + A     + G +   ++  + +L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     +IE  +R E IR AI++    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHNNYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIM 465


>gi|205372805|ref|ZP_03225615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus coahuilensis m4-4]
          Length = 443

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/423 (31%), Positives = 213/423 (50%), Gaps = 31/423 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I+++  DSR ++   +++ + G +    D H +I QAI  GA AI+V            
Sbjct: 22  EISQIEMDSRRVKNQCMYICVPGIEGFLADRHDYIDQAIENGAHAILVEK-------EVD 74

Query: 86  IRSNTPILVVDNTR----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           + S+  ++ V++ R    K  ++F +  Y +    I+ +TGT+GK++    V+++   +G
Sbjct: 75  VPSHITVVRVEDVRLAFSKIATVFHNEAYKQ--LKIIGLTGTNGKTTTTFLVEKLLNDAG 132

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L +  +G   T I+       L T  P  L +  + +  + + +  +E SS G+D  R+ 
Sbjct: 133 LKTGLMGNLGTKINGIMYPTELNTQEPHTLHRNFAKMVEEDMEYCVMEVSSQGIDMGRMK 192

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMK 258
           G+    G  TNL  DH+DYH T   Y ++K +LF  L     E P  I   D  S    K
Sbjct: 193 GVPFYRGILTNLTHDHLDYHGTVDHYMHSKSQLFTHLEEFEGEKPLAILNKDDDSYAYFK 252

Query: 259 RAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            A       +S G       Q   +H  K   IH K     S+E ++     PL G+F V
Sbjct: 253 NASRG--ETISYGIDQDSIVQASELHFNK-NGIHFKVTNKRSLEEQEIHL--PLVGKFNV 307

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YNAL A  +   +G+        LE L  +PGR E   T + G  + VDYAHT ++LE +
Sbjct: 308 YNALAAITVAYTVGVTLEESKRSLENLSQIPGRMESF-TTANGVTVIVDYAHTPDALENV 366

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+++++   G++I V GCGG+RD+ KRPIMGKIA + +D    T DNPR E PE+I   +
Sbjct: 367 LQSLKSSLDGKLITVVGCGGNRDENKRPIMGKIAAECSDYVYFTSDNPRFEQPEQILEGM 426

Query: 433 IHG 435
           + G
Sbjct: 427 VAG 429


>gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 498

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/482 (30%), Positives = 232/482 (48%), Gaps = 30/482 (6%)

Query: 16  NQLSIFPMQW----RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           N L  F   W     ++ IN +  DSR ++   IF+A+ G K+DGH FI +A+++   A+
Sbjct: 4   NNLKYFLSPWIKNLPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFIFEALSKKVVAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +   +   Q       +N PI+      K LS  + R Y +      ++ +TGT+GK++V
Sbjct: 64  LSEVSERKQHGKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVIGITGTNGKTTV 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI------SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
               Q I Q S L   +I    T+      S    +N  TT S I +   L Y     V 
Sbjct: 124 T---QLINQWSELLGDKIATMGTLGNGFYKSLIPTEN--TTASAIDIQSFL-YSVLNKVK 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SSHGL Q+R+  I   A  FTNL +DH+DYH+  + Y  AK  LF +     + 
Sbjct: 178 SVTIEVSSHGLVQNRVKNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTD--HTVNK 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVEG 297
            I+ A+D Y++  +K+  N     +++       Y  K+++   +     K  V      
Sbjct: 236 IILNANDKYAQNWLKKFSNKYTIAVTIQDCTQKKYSTKWLNATYIKVYGEKTNVKFESSW 295

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G F + N L+A    + +    + +++   ++  + GR +   +      
Sbjct: 296 GHGILSTYLIGTFNIKNLLLALACMLEMNYKLSDLVKKSIQIKPIYGRMQTFNSIKTKPI 355

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             +DYAHT ++LE  L  I+      +I  +FGCGG+RD+ KRP+MG+IA  +A+  ++T
Sbjct: 356 CIIDYAHTPDALEKSLNAIKIQYCKKKIWCIFGCGGERDKKKRPLMGEIAEKIANKVVIT 415

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +DNPR ED  KI  EII G       I   NR +AI       N  D++ +AGKGHE   
Sbjct: 416 NDNPRHEDQNKIIQEIITGCKEKEKIIIIPNRKKAITYVFFQSNIDDIIFIAGKGHENYQ 475

Query: 474 IV 475
           I+
Sbjct: 476 II 477


>gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae CWL029]
 gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae J138]
 gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae TW-183]
 gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           J138]
 gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 483

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 150/490 (30%), Positives = 241/490 (49%), Gaps = 55/490 (11%)

Query: 10  DFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           D  EL++  Q  I+  + R  ++  ++ DSR +  G IF+A  G + DG+ F   A+A G
Sbjct: 2   DLKELLHGVQAKIY-GKVRPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFAVDALANG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AI  S           I  N   L  + + K+    +S+L+       + VTGT+GK+
Sbjct: 61  AIAIASSLYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLH------TIGVTGTNGKT 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQ 180
           +V   ++ +     L S+Q  P+  + +           +  TTP+P  L K L+ +  Q
Sbjct: 115 TVTCLIKAL-----LDSYQ-KPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQ 168

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS GL   R+          TN+  DH+D+H T + Y  AK +LF  L+P 
Sbjct: 169 NRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFETYVAAKAKLF-SLVPP 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLK----KVCAIHNKQQ 290
               +I  D  Y+ + ++   +A   V++ G      Y+   I L     K   ++  Q+
Sbjct: 228 SGMVVINTDSPYASQCIE---SAKAPVITYGIESAADYRATDIQLSSSGTKYTLVYGDQK 284

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  S       F+    G++ VYN L A + +  ++  D   +LE +      PGR + V
Sbjct: 285 IACSSS-----FI----GKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPV 335

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                   +Y+DYAHT ++L+ +L  +  +    GR+IVVFGCGGDRD+ KR +M ++ +
Sbjct: 336 LMGP--CPVYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQV-V 392

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    A+VT DNPRSE PE I  EI  G      FIE  +R +AI  A+ + + +D++++
Sbjct: 393 ERYGFAVVTSDNPRSEPPEDIVNEICDGFYSKNYFIEI-DRKQAITYALSIASDRDIVLI 451

Query: 465 AGKGHETVHI 474
           AGKGHE   I
Sbjct: 452 AGKGHEAYQI 461


>gi|160939823|ref|ZP_02087170.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437257|gb|EDP15022.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
          Length = 511

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 149/490 (30%), Positives = 235/490 (47%), Gaps = 39/490 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSLQDFSA 84
           ++ EV  DSR    G +FV + G + D H F+P  +  G   +V    +    +    + 
Sbjct: 22  EVTEVVYDSRKAVPGAVFVCMAGTRVDSHRFVPDVLRAGVRVLVTERDIEEELAASGLAE 81

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSG 141
                  IL     R+ L+L ++  +G +P + +   G +G     +    ++ I + +G
Sbjct: 82  HEMGRVTILKTAEARRSLALLSAARFG-YPASKMITIGVTGTKGKTTTTHMIKAILEAAG 140

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                IG T T I+        TTP    L ++ + ++  G  ++ +E SS G+  HR+D
Sbjct: 141 KKVGMIGTTGTVINGQVTPTMNTTPESYELHQSFAKMAEAGCQYMIMEVSSQGIKMHRVD 200

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+    G FTN+  DHI  D H     Y   K RL    L      ++  +D + KE++K
Sbjct: 201 GLAFDYGIFTNISPDHIGPDEHADFAEYLCCKSRL----LSMCRIGLVNLNDGHFKEIVK 256

Query: 259 RAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVT--------ISVEGK-DFDFLFPLP 307
              +A CR+ +  V   G+    K      N + V+          V G  D D    +P
Sbjct: 257 ---DASCRLYTYCVKEDGE---TKADFEASNVRYVSRPDFVGTEFDVTGNLDMDVRLGIP 310

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V NAL A  +C  +G+    ++  LE + V  GR E V T+SR   + VDYAH + 
Sbjct: 311 GLFNVDNALAALCVCSFLGLPKDRIVHALEHIRV-NGRMEIVYTSSRC-TVLVDYAHNAV 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S+E +L  +R     R++VVFGCGG+R + +R  MG+I   LAD++I+T DN R E  E 
Sbjct: 369 SMESLLTTLRQYHPRRLVVVFGCGGNRSKDRRYSMGEIGGRLADLSIITADNSRYEKVED 428

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I A+I   I      F+E  +R +AIR++I      D++ V GKGHE    + NG +   
Sbjct: 429 IMADIRGSIEKTGGDFVEIPDRRDAIRSSILHAQPGDMIAVIGKGHEDYQEI-NGVRHHF 487

Query: 484 VDCDIIREIL 493
           +D ++I E +
Sbjct: 488 LDREVIEETI 497


>gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
 gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
          Length = 607

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 149/490 (30%), Positives = 240/490 (48%), Gaps = 68/490 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +S DSR ++   ++VA+ G K  G  F   A+  GA AI+  +A +     A +  
Sbjct: 88  EVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGEAPV-- 145

Query: 89  NTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P+LV +N R+++   A+ +YG       +  AVTGT+GK++    ++ +  R+GL   
Sbjct: 146 --PVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVF-RTGLG-V 201

Query: 146 QIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G   TI       +  +++TTP   ++   L+ +    V   ++E SSH +D HR+DG
Sbjct: 202 KTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHRVDG 261

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRA 260
           +K     FTNL +DH+D H T + YF++K +LF    P+ +  A+I ADD + +++   A
Sbjct: 262 VKYAVAGFTNLTQDHLDLHGTMEHYFDSKAQLF---TPERAELAVITADDEWGEKMFSAA 318

Query: 261 -HNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVE--------------GKDFDFLF 304
               G + +      +   L +V A    +    + V+              G+  +   
Sbjct: 319 CEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVDNGAGESVECYT 378

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-------VVPGRFEFVGTNSRGGR 357
            LP +F V NA +AA L   +  DSA     L +L        VVPGR + +   S    
Sbjct: 379 GLPADFNVSNAALAA-LMAYLDTDSAERERLLPELASGSALTPVVPGRMQLI---SLAPH 434

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VD+AH  + L   L+ +     G++++VFG  G+RDQ KRPIMG IA   ADI +VTD
Sbjct: 435 AIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATGERDQLKRPIMGAIAAQYADIVVVTD 494

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----------------KQDV 461
           D+P  E PE IRA         +E+G +    R A ++LN                + D 
Sbjct: 495 DDPHGEAPEPIRA--------AVEEGAQKAENRRATQILNISPRAAAIDAAIALAGEHDA 546

Query: 462 LVVAGKGHET 471
           +++AG+GHET
Sbjct: 547 ILIAGRGHET 556


>gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1]
 gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseiflexus sp. RS-1]
          Length = 509

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 223/477 (46%), Gaps = 53/477 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  DSR +  G +FVA  G   DGH +IPQA+ +GA A+V       +D +   R 
Sbjct: 22  EIAGVVYDSRAVTPGALFVAYRGFHTDGHAYIPQALERGAAAVV------YEDPAWDGRV 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLS--- 143
             P L V N R  L+  A+  YG HP   + + G +G     +  F+  +   +G +   
Sbjct: 76  PVPALRVPNARVALAPLAAAFYG-HPGRRMRIVGVTGTDGKTTTTFLTSVALEAGGAITG 134

Query: 144 -----SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--Q 196
                 F+IG       +  D+R +TP    +   L  ++  G ++  +EA+SH L    
Sbjct: 135 LMGTVDFKIGE----RMWTNDSRQSTPEAPEVQALLRDMAEAGCSYAVIEATSHALSARW 190

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---------LPKESPAIIY 247
           +RL G       FTN+ ++H+D+H T + Y   K RLFE L           +   A++ 
Sbjct: 191 NRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFNDAAAPFKQRKIAVVN 250

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD + +  +  A  +  R+    +    +  + V +  +  +  ++      D    L 
Sbjct: 251 ADDPHHRMFLDAAPVSAERLTYAVHAHADVRAEDVRSTRDGLRFRVTTPWGAADARLRLT 310

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+F V+NAL A  +  A G+     L  LE++  V GR E +    +   + VDYAHT  
Sbjct: 311 GDFNVWNALAALTVACAEGVPLERCLAALERVPGVRGRMERI-EAGQPFTVLVDYAHTPG 369

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE- 426
           + E + + +R +T G++I VFG  G+RD+ KRP+ G+IA    D+ IVTD++PR ED   
Sbjct: 370 AFEKLFRIVRPLTEGQVIAVFGSAGERDRAKRPLQGEIAGRFCDLVIVTDEDPRLEDRAA 429

Query: 427 -------------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                        K   E    IP      +R  AIRTA       D++++ GKGHE
Sbjct: 430 IIAEIAAGAEAVGKRIGETCLCIP------DRALAIRTAFAYARPGDIVLLLGKGHE 480


>gi|170700177|ref|ZP_02891195.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
 gi|170134909|gb|EDT03219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
          Length = 512

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 202/409 (49%), Gaps = 38/409 (9%)

Query: 105 FASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--- 159
            AS  YG   +++LA  VTGT+GK+S   ++      + L++    P + I +       
Sbjct: 98  IASGWYGDPSDSLLAIGVTGTNGKTSCTQWIA-----AALTALHQ-PCAVIGTLGSGMHG 151

Query: 160 ----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                  TTP    L ++L+ L   G   V++E SSH L Q R++G       FTNL +D
Sbjct: 152 HLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDIAVFTNLTQD 211

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--- 272
           H+DYH T  AY  AK +LF     +   A++  DDA  + ++++      RV ++ Y   
Sbjct: 212 HLDYHGTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLAG---RVRTIAYGIG 266

Query: 273 ------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                   + +    V A        +S    D D      G F V N L   G  +A  
Sbjct: 267 DAQTPDADRELVALDVRATATGTAFRLSSSWGDADVEVGTLGAFNVSNLLAVLGSLLAAD 326

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITS--- 381
           +     +  + +L  V GR + +G   +     + +DYAHT ++LE  L  +R I +   
Sbjct: 327 VPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAAARG 386

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439
           GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I G+  P  
Sbjct: 387 GRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVIAGMTAPDH 446

Query: 440 IEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             +  +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 447 ARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 507

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 141/487 (28%), Positives = 243/487 (49%), Gaps = 47/487 (9%)

Query: 1   MKLQDLI---YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK+ D++   + ++ E +NQ          R +  ++ +S  ++ G+IF+AI G+KEDG+
Sbjct: 1   MKITDILKMGHLNYSEPLNQ---------SRNVKGITDNSNEVRPGYIFIAIKGHKEDGN 51

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
           ++  QAI  GA  I+        DF+       P L V N RK L   A + Y    +N 
Sbjct: 52  IYTQQAILNGAILIIGED-----DFTNLT---VPYLKVKNARKTLGQVAKKFYKDPSKNK 103

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TGT+GK+++  F++Q+ ++ G S   IG   TI +     R+ + +    AK ++
Sbjct: 104 IMIGITGTNGKTTIGFFIKQLLEKQGYSVSSIG---TIYNEINGKRIQSVNTTPNAKTIN 160

Query: 176 YLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            L +     V V E SS GL Q+RL+GI+     F NL  DH+DYH T + YF  K  LF
Sbjct: 161 QLLTASTDQVVVMEVSSQGLAQNRLEGIQFDYALFNNLQHDHLDYHGTMEEYFECKALLF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+ L  +  AII  +D + K++ +R    G +V++VG +    +  ++ A      V++ 
Sbjct: 221 EK-LKLDGTAIINYNDRWGKKLTERLTAQGKKVITVGEEP--TNQVQILA-KELNNVSVR 276

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + K+++   PLPG   + N  +++ +   + +    V  ++ +   + GRFE     ++
Sbjct: 277 YKNKEYNLRTPLPGVHNLENLTMSSCVAHELEVPYEQVTTYMSQFSGIAGRFEIFHLANK 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++L   +    +  + RII VFG  G+RD+ KR  M +    L+  AI
Sbjct: 337 -VTVVVDYAHTPDALATSINTAISNGAKRIITVFGFAGNRDESKRKAMLENVCRLSTYAI 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-----------AIRTAIEMLNKQDVLV 463
           +T         + + ++ I      I+K  ++E           AI+ AI      D ++
Sbjct: 396 LTVTELFGSTIDNLYSDYIS-----IQKECQVEEKTSIIMDRTLAIQKAIWEAQSGDWVL 450

Query: 464 VAGKGHE 470
           + GKGHE
Sbjct: 451 LLGKGHE 457


>gi|254246423|ref|ZP_04939744.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871199|gb|EAY62915.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 515

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 150/497 (30%), Positives = 230/497 (46%), Gaps = 70/497 (14%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFI--------------PQAIAQGAEAIVVSSAY 77
           ++ +D+R ++AG +FVA   +  D   F+              P+ +A   +A  V  A 
Sbjct: 30  QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPDAPAVPVA- 88

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQ 135
                          L V    +     AS  YG   +++LAV  TGT+GK+S   ++  
Sbjct: 89  ---------------LAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIA- 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               + L++    P + I +              TTP    L ++L+ L   G   V++E
Sbjct: 133 ----TALTALHQ-PCAVIGTLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAME 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L Q R +G       FTNL +DH+DYH T  AY  AK +LF     +   A+I  
Sbjct: 188 VSSHALHQGRANGTAFDVAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVINR 245

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           DDA  + ++++      RV ++ Y           + +    V A        +     D
Sbjct: 246 DDAAGRRLLEKLAG---RVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGD 302

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-- 357
            +      G F V N L   G  +A  +     L  +E+L  V GR + +G   +     
Sbjct: 303 ANVEVGTLGTFNVSNLLAVLGALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPL 362

Query: 358 IYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           + +DYAHT ++LE  L  +R I +   GR++ +FGCGGDRD  KRP+MG IA  LAD  +
Sbjct: 363 VVIDYAHTPDALEKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVV 422

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHE 470
           VT DNPRSEDP+ I  +++ G+    ++  RIE    AI  A+    ++DV+V+AGKGHE
Sbjct: 423 VTSDNPRSEDPQHIIDQVVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHE 481

Query: 471 TVHIVTNGEKKMSVDCD 487
               +  G+K+   D D
Sbjct: 482 ATQEIM-GKKRTFSDQD 497


>gi|152967148|ref|YP_001362932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151361665|gb|ABS04668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 537

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 238/472 (50%), Gaps = 52/472 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR ++ G ++ A+ G    G  F  QA A GA A +   A +  D  A   + 
Sbjct: 43  VTGVTLDSRRVRPGDLYAALPGANVHGARFAAQAAASGAVAALTDPAGA--DLVAA--AG 98

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P LVVD+ R  L   A+R++G+ P ++L    VTGT+GK++ A  V+ + + +G ++  
Sbjct: 99  LPALVVDDPRAVLGDLAARIHGR-PGDVLTTVGVTGTNGKTTTAYLVESLLRSAGWTTGL 157

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   T I+    D+  TTP    L   L+ + + GV   ++E SSH L QHR+DG+ L 
Sbjct: 158 LGTVETRIAGERVDSVRTTPEAPDLHALLARMVAAGVRGCALEVSSHALVQHRVDGLVLD 217

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAH 261
              FTNL +DH+D+H + + YF AK  LF     +     +  D A    + + + +RA 
Sbjct: 218 VALFTNLSQDHLDFHGSMEEYFAAKASLFTPAHARRGVVWVEEDGAPDASWGRRLARRAS 277

Query: 262 ---------NAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                    +A  RV  V  G  G   HL            T+     + D   PLPG+F
Sbjct: 278 VPVVTVGAGDADWRVTDVRTGRAGSTFHLSG----------TLPGGPVELDLTCPLPGDF 327

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NA +AA   + +G   A+V   L     VPGR + V        + VDYAHT ++L+
Sbjct: 328 NVANAALAAVAVLHLGPAPAVVAAGLAAAEGVPGRMQTV-VRDGAPLVVVDYAHTPDALD 386

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR- 429
            +L+ +R IT GR++ VFG GGDRD+GKRP+MG     LAD+A+VTDDNPRSED   +R 
Sbjct: 387 RVLRTLRGITPGRLVAVFGAGGDRDRGKRPLMGAAVAALADVAVVTDDNPRSEDAAAVRA 446

Query: 430 ----------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                     AE++            +   R A       D +++AGKGHET
Sbjct: 447 AVLAGARSGPAEVLEVADRAAALDAALARCRGA------GDTVLLAGKGHET 492


>gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 494

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 135/463 (29%), Positives = 221/463 (47%), Gaps = 37/463 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++++++DSR  + G IFVA  G   D H F    I QG   +VV+    L+        +
Sbjct: 23  VDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCRIVVVNRELELE-------GD 75

Query: 90  TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++V +T +  SL A  L+    H      VTGT+GK+S+A+ +  I ++   SS  +
Sbjct: 76  VTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKSSAYL 135

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I+        TTP  + L K +     +G   +++E SSHGL   RL G++   
Sbjct: 136 GTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLEVSSHGLSLGRLRGVEFDV 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNA 263
             F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +   A+  
Sbjct: 196 AIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSGYL---ANVT 252

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVYN 314
              V + G   +   + K         +  S++G +FD   P           G F + N
Sbjct: 253 PYEVFTYGIDNEAQFMAK--------NINESLQGVEFDLSTPFGDYHVKSPYVGRFNISN 304

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            + A     + G     ++  +  L  V GR E +   S    + +DYAHT++ +  ++ 
Sbjct: 305 IMAAIIAVWSKGATMEEIINAVTSLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMNKLID 363

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++     ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  
Sbjct: 364 AVQPFVKQKLIFLVGMAGERDMTKTPEMGSVAC-RADYVIFTPDNPANDDPKMLTAELAK 422

Query: 435 GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           G     ++E  +R E IR AI++    D +V+A KG E   I+
Sbjct: 423 GATHDNYVEFDDRAEGIRHAIDVAEPGDTVVLASKGREPYQIM 465


>gi|324998161|ref|ZP_08119273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudonocardia sp. P1]
          Length = 534

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 150/460 (32%), Positives = 222/460 (48%), Gaps = 39/460 (8%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99
           ++ G +F A+ G +  G  F  QAIA GA A++  +  +  D      S  P+LV    R
Sbjct: 61  VRPGDLFAALPGARAHGADFAAQAIAGGAAAVLTDADGA--DRPEIRHSRLPVLVHPAPR 118

Query: 100 KFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSF 156
           + L   ++ +YG+      +L VTGTSGK++V   ++     +G S+  +G   T +   
Sbjct: 119 EVLGPVSAAIYGEPTARLRVLGVTGTSGKTTVGHLLEAGLTAAGRSTGLLGTVRTRVQVP 178

Query: 157 AQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            ++ R      TTP    L    + +   GVT V++E SSH L   R+ G +   G+FTN
Sbjct: 179 GEEPRALPSAFTTPEAPDLQALFAVMVEAGVTDVAMEVSSHALALGRVGGSRFAVGAFTN 238

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCRVL 268
           L +DH+D+H T   YF AK RLF             ++  DD + +++  R  +A    +
Sbjct: 239 LSQDHLDFHPTMTDYFEAKARLFGGGGAGVEAARHGVVCIDDEWGRQLASRRPDA----V 294

Query: 269 SVGYQGKFIH----LKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLC 322
           +VG      H    ++ + A  +  Q   +V   G        LPG + V NALVA    
Sbjct: 295 TVGSDPAGPHATWTVRDLAAHPDGTQTFTAVGPGGLAQAVTLALPGRYNVANALVALACL 354

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAH--TSNSLEMILKNIR 377
            A GI   +  +   +L V PGR + V      G+ +   VDYAH   + +  +     +
Sbjct: 355 DADGIPPEVAAQGFARLSV-PGRMQRVDA----GQPWLAVVDYAHKPAAVAALLDALRAQ 409

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                R+I V GCGGDRD GKRP+MG  A   +D  +VTDDNPR E+P  IR  ++ G  
Sbjct: 410 IHPHARVITVLGCGGDRDTGKRPLMGAAAAIRSDTLVVTDDNPRGEEPATIRRAMLEGAM 469

Query: 437 --PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             P     IE G+R  AI  A+      D +V+AGKGHET
Sbjct: 470 HEPARGDVIEIGDRRSAIVYAVRSARPGDAVVIAGKGHET 509


>gi|262364615|gb|ACY61172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D182038]
          Length = 370

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/322 (37%), Positives = 166/322 (51%), Gaps = 10/322 (3%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT S + +   L  L  QG T  ++E SSHGL Q R+  +   A  FTNL RDH+DYH  
Sbjct: 33  TTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVAALSFAAVVFTNLSRDHLDYHGN 92

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278
             +Y  AK  LF     +    II ADD   +  + +   A    ++     G+ G ++ 
Sbjct: 93  MTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLS 150

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             KV    N   +       + +    L G F V N LVA    +  G   A +L     
Sbjct: 151 ANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPH 210

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           L  V GR E      +   + VDYAHT ++LE  L   R   +G++  VFGCGGDRD+GK
Sbjct: 211 LQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCTGKLWCVFGCGGDRDKGK 269

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEM 455
           RP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+   G ++    R EA+ +AI  
Sbjct: 270 RPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQ 329

Query: 456 LNKQDVLVVAGKGHETVHIVTN 477
             + DV+++AGKGHE   +V N
Sbjct: 330 AKEDDVVLIAGKGHEDYQLVGN 351


>gi|194290818|ref|YP_002006725.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224653|emb|CAQ70664.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 522

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 231/494 (46%), Gaps = 41/494 (8%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++S D+R +  G +F A ++GN     DG  +I QAIA GA A+V    Y    F     
Sbjct: 31  QLSGDTRRLSRGDVFFAYVLGNDRLATDGRPYIAQAIAAGAGAVV----YEADGFDWPFG 86

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSS 144
              P L V    +     A+  +G +P   LAVTG   T+GK+S + ++ ++ Q +G   
Sbjct: 87  DAVPHLAVSRLHQLAGPIAAGWHG-NPARGLAVTGITGTNGKTSCSQWLARVLQATGTPC 145

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   T      Q    TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G  
Sbjct: 146 ATIGTLGTGFPDALQATGFTTPDAVQLQASLATLHDAGARAVAMEVSSHGLEQERVAGTH 205

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TNL +DH+DYH +   Y  AK RLF         A+I  DDA  + ++     A
Sbjct: 206 FSVAVLTNLTQDHLDYHGSMAEYEAAKARLFR--WDGLRTAVINRDDAMGQRLLAADAAA 263

Query: 264 ------------GCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                       G    +V G +G ++    V A        I       +   P+ G F
Sbjct: 264 VVAPHVIEYGIDGPAAATVRGPRGAWLRATSVRATATGTAFHIDGSFGHAEMATPMIGAF 323

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN----SRGGRIYVDYAHTS 366
            V N L   G  +A G+     +  L  L  V GR E  G      ++     VDYAHT 
Sbjct: 324 NVSNLLAVLGAALANGVAWDAAIAALRALAPVEGRMELFGAAGHDAAQAPLAVVDYAHTP 383

Query: 367 NSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++LE  L  +R +    +GR+  VFGCGGDRD  KRP+MG +A  LAD  ++T DNPRSE
Sbjct: 384 DALEQTLAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAERLADEVVLTSDNPRSE 443

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I   I  G+     +G +IE    AI  A+      DV++VAGKGHE    +  G 
Sbjct: 444 DPQDILDAIADGMT-ERARGRQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEI-QGR 501

Query: 480 KKMSVDCDIIREIL 493
           K+   D + +R  L
Sbjct: 502 KRPFSDREHVRLAL 515


>gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 552

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 230/460 (50%), Gaps = 45/460 (9%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT--PILVVDN 97
           ++AG  FVAI G    G  F   A  +GA A++  +        A I ++T  PI++V++
Sbjct: 53  LRAGEAFVAIRGVNRHGAEFAATAAERGAVAVITDAE------GAEIAASTGLPIVIVED 106

Query: 98  TRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            R  L   ++ +YG  P++    +LA TGT+GK+SV+  ++ I         Q+G  + +
Sbjct: 107 PRALLGDLSAWVYGTGPDDDIPQLLATTGTNGKTSVSHLLEGILG-------QLGVVTGL 159

Query: 154 SSFAQD--------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           SS A+         +RLTTP        L+ +  +GV  V+VE S+  L +HR+DG+   
Sbjct: 160 SSTAERHIAGEVIVSRLTTPEASEFHALLALMRERGVEAVAVEVSAQALTRHRVDGLVFD 219

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL  DH+D +   + YF AK+ LF     +    ++  D A   E++ RA     
Sbjct: 220 VAGFTNLTHDHLDDYADMREYFEAKLPLFRADRARRG--VVCLDSASGAEIVARAEIPVV 277

Query: 266 RVLS--VGYQGKFIHLKKVCAIHNKQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +++  +           V  +  +Q+ T     + +G+    + P+ G     NA +A 
Sbjct: 278 TIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARDGRALTTVVPVIGRHMAANAGLAI 337

Query: 320 GLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            + +  G     +++ L+   +   +PGR + V +   G  +YVD+ H+ ++ E  L  +
Sbjct: 338 VMLLETGYAWERLVDALDGGRIDASLPGRTQLV-SGPEGPAVYVDFGHSPDAFEKTLAAV 396

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T G+++++FG  GDRD  KR  MG+ A+  +DI +VTD +PR EDP+ IRA ++ G 
Sbjct: 397 RRVTPGKVVMLFGADGDRDATKRHDMGRTAVLGSDILVVTDHHPRHEDPDAIRAVLVEGA 456

Query: 437 PGFIEKGNRIE------AIRTAIEMLNKQDVLVVAGKGHE 470
                    +E      AI  A++++ + D ++ AG GH+
Sbjct: 457 RRARPDAEILEFTPPERAILEAVKLVGEGDAILWAGPGHQ 496


>gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
 gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
          Length = 506

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 153/476 (32%), Positives = 221/476 (46%), Gaps = 48/476 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-----SAYSLQDFSA 84
           ++ +  DSR +    +F A  G+  DG  F+ +A  QGA AI+       SA  L+D + 
Sbjct: 28  LSTLEEDSREVLKNSLFYAHKGHTVDGFDFMLKAQEQGAAAIICDYDKDPSAEQLKDVT- 86

Query: 85  TIRSNTPILVVDNTRKFLSL--FASRLYGKHPENI--LAVTGTSGKSSVASFVQQI---- 136
                 P+L   + +K +S+  FAS  Y      +  + +TGT+GKS+V   + Q     
Sbjct: 87  -----IPLL---HLKKGMSVGEFASWFYFSPSSKLRLIGITGTNGKSTVTQLIAQYLALF 138

Query: 137 ---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              C   G   +   P    SS       TT S I L KAL+    +G  + ++E SS G
Sbjct: 139 NRKCAVFGTLGYGFLPNLKQSSN------TTLSAIALQKALAEAVKEGADYAALEVSSIG 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           + + R+DG     G+FTNL RDH+DYH+T + Y  AK      + P      +  DDA  
Sbjct: 193 VCEGRIDGCIFSGGAFTNLTRDHLDYHKTMENYAKAKREFLNRVNPDH--LCLNVDDAMG 250

Query: 254 KEVMKRAHNA----GCRVLSVGYQGKFIH--LKKVCAI---HNKQQVTISVEGKDFDFLF 304
           K V      A        L+V    K +   L  V  I   H+  ++ I       D   
Sbjct: 251 KTVATLKPEAILFSPKGALAVNSPDKSVKHALLNVTGIEYKHDGLKLRIDSSFGKGDASL 310

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F   N L A  + ++       +L+   +L  + GR E      +  R+ VDYAH
Sbjct: 311 SLLGSFNAENFLCALSVLLSFHFPLKDLLDKASQLKPICGRMECFYKEGK-PRMIVDYAH 369

Query: 365 TSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           T + +E  LK  R+ T  G++  V GCGGDRD+GKRP+M   A   AD  I T DNPR+E
Sbjct: 370 TPDGVESALKAARSHTPGGKVWCVLGCGGDRDKGKRPMMAIKACVYADKVIFTSDNPRTE 429

Query: 424 DPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DP +I  ++  G+ G  +       R +AI  A +     D +VVAGKGHE   I+
Sbjct: 430 DPVRILEDMESGVKGSADNYECIVKREDAITKAFKEAQSADCVVVAGKGHEDYQII 485


>gi|295394734|ref|ZP_06804949.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972330|gb|EFG48190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 491

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 230/492 (46%), Gaps = 52/492 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSAT 85
           +R I  V +DSR  + G ++ A  G    G  F+ Q + +G  A +   A   +   +  
Sbjct: 18  DRDITSVDNDSRTTKPGGLYAAFPGANVHGASFVTQLVDKGVRAFLTDPAGVEIMREAQV 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-QQICQRSGLSS 144
             ++  ILV +  R      A+++YG      +     +   +  +F+     Q  G ++
Sbjct: 78  DLTDLTILVHEFPRAIAGHIAAQVYGTGESPAMFGVTGTNGKTTTTFILDAFLQALGHTT 137

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG  +T I+    D+  TTP    L + L+ +   GV   S+E SSH L QHR+DG+ 
Sbjct: 138 GLIGTVATVIAGDRVDSVRTTPEASALHQLLARMRDAGVDTCSMEVSSHALSQHRVDGVH 197

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               SFTNL +DH+DYH T   YF+AK  LF          ++ ADD   K         
Sbjct: 198 FDVVSFTNLSQDHLDYHGTMDEYFSAKAALFTPEFASRG-VVVLADDWARK--------- 247

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314
              ++SV      I +  V      +   + V+G  ++   P         LPG F V N
Sbjct: 248 ---LVSVSQ----IPVVTVSMNSEDKPDYLVVQGDSWELHTPQGRIPFTPVLPGLFNVTN 300

Query: 315 ALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
             +A  + +  G+  D+   + +  ++ VVPGR E V  N+   R  +DY+HT +++E +
Sbjct: 301 TALALAMLLEFGVQFDAVASIANGTEV-VVPGRMEVV--NAEHPRAIIDYSHTPDAIEKV 357

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +   +   ++VV G GGDRD  KR  MG  A   AD+ IVTDDNPRSEDP  IRA++
Sbjct: 358 LDRL---SGDPVVVVVGAGGDRDSTKRAAMGVAAARGADVVIVTDDNPRSEDPAAIRAQV 414

Query: 433 I-----------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           +           H +    E  NR  AIR A+E+      +VVAGKGHET   +  GE  
Sbjct: 415 LAGAREAAGARAHTVE---ECENRGTAIRRAVELAGANGTIVVAGKGHETGQEIA-GEVL 470

Query: 482 MSVDCDIIREIL 493
              D D  RE +
Sbjct: 471 PFSDRDKTREAI 482


>gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
 gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
          Length = 581

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 150/491 (30%), Positives = 240/491 (48%), Gaps = 70/491 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +S DSR ++   ++VA+ G K  G  F   A+  GA AI+  +A +     A +  
Sbjct: 62  EVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGEAPV-- 119

Query: 89  NTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P+LV +N R+++   A+ +YG       +  AVTGT+GK++    ++ +  R+GL   
Sbjct: 120 --PVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVF-RTGLG-V 175

Query: 146 QIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           + G   TI       +  +++TTP   ++   L+ +    V   ++E SSH +D HR+DG
Sbjct: 176 KTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHRVDG 235

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMK-- 258
           +K     FTNL +DH+D H T + YF +K +LF    P+ +  A+I ADD + +++    
Sbjct: 236 VKYAVAGFTNLTQDHLDLHGTMEHYFESKAQLF---TPERAELAVITADDEWGEKMFSAA 292

Query: 259 -------------RAHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFL 303
                         A  AG   +   +  +   + KV    + ++  V   V G+  +  
Sbjct: 293 CEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVANGV-GESVECY 351

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-------VVPGRFEFVGTNSRGG 356
             LP +F V NA +AA L   +  DSA     L +L        VVPGR + +   S   
Sbjct: 352 TGLPADFNVSNAALAA-LMAYLDTDSAERERLLPELASGSALTPVVPGRMQLI---SLAP 407

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              VD+AH  + L   L+ +     G++++VFG  G+RDQ KRPIMG IA   ADI +VT
Sbjct: 408 HAIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATGERDQLKRPIMGAIAAQYADIVVVT 467

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----------------KQD 460
           DD+P  E PE IRA         +E+G +    R A ++LN                + D
Sbjct: 468 DDDPHGEAPEPIRAA--------VEEGAQKAENRRATQILNISPRAAAIDAAIALAGEHD 519

Query: 461 VLVVAGKGHET 471
            +++AG+GHET
Sbjct: 520 AILIAGRGHET 530


>gi|87302991|ref|ZP_01085795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
 gi|87282487|gb|EAQ74446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
          Length = 508

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 158/509 (31%), Positives = 246/509 (48%), Gaps = 49/509 (9%)

Query: 11  FPELINQL-----SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            P+L++ L        P Q  +  +  +S DSR + AG +F+ + G++ DG  F P A+ 
Sbjct: 1   MPQLLHSLLQDCAVAIPAQLPDAVVTGLSCDSRRVAAGTLFIGLPGSQVDGGSFWPAALE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTG 122
           +GA A ++  A + Q          P+LV+++    ++ +A RL   +   P   LA+ G
Sbjct: 61  RGAAAALIGPAAAAQ---CPPGPADPVLVLEDP---VAEWAGRLAASFWHDPSRRLALIG 114

Query: 123 TSGKSSVAS---FVQQICQRSGLSSFQIG------PTSTISSFAQDNRLTTPSPIYLAKA 173
            +G +   +    ++ +    G S+   G      P  ++++       TT     L   
Sbjct: 115 VTGTNGKTTTTHLIEHLSAGCGKSTALFGTLINRWPGHSVTA-----SHTTAFADVLQGQ 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+     G    ++E SSH LDQ R+ G       FTNL +DH+DYH + +AY  AK RL
Sbjct: 170 LARAVEAGAQLAAMEVSSHALDQRRVAGCHFAGAVFTNLTQDHLDYHPSMEAYLEAKARL 229

Query: 234 FE-ELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL---------SVGYQG-KFIHLKK 281
           F  ELL  +  A++  DD +   + +R +   G R+           VG +    + L  
Sbjct: 230 FSSELL--DGSAVVNIDDPWGARLAERLSGQLGERLWRSSLAVAAAEVGPEDLPELRLDD 287

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +    +    T+        F  PL G F + N L A G+    G+  A +LE +     
Sbjct: 288 LVFAADGVSGTLITPLGCGAFRSPLVGRFNLMNLLQAVGVLQQQGLPLAQLLEAIPSFRG 347

Query: 342 VPGRFE--FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
           VPGR E   +   +    + VDYAHT + LE  L   R    G+++ VFGCGGDRD+GKR
Sbjct: 348 VPGRMERVMLPEAAELPAVLVDYAHTPDGLENALAACRPFARGQLVCVFGCGGDRDRGKR 407

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEML 456
           P M  IA  LAD  +VT DNPR+EDP++I  +++ GIP   +   + +R  AI  A+ M 
Sbjct: 408 PQMAAIAARLADRVVVTSDNPRTEDPQRILDDVVAGIPSGTDLTVEVDRAAAIAAAVAMA 467

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              D++++AGKGHE   I+  G  K+  D
Sbjct: 468 GPSDLVLIAGKGHEDYQIL--GTTKVHFD 494


>gi|229820901|ref|YP_002882427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
 gi|229566814|gb|ACQ80665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
          Length = 536

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 156/492 (31%), Positives = 238/492 (48%), Gaps = 62/492 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ D+R +  G IF A+ G    G  F   A A GA A++  ++ +    +A I    P+
Sbjct: 41  ITLDNRGLAPGEIFAALPGAHTHGARFAAAAAAAGASAVLTDASGAAAAEAAGI----PV 96

Query: 93  LVVD-----------NTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA----SFVQQ 135
           LV D             R+ ++  A+ +YG+  E +   AVTGT+GK++ +      +  
Sbjct: 97  LVADVDGSGDGAGRAEFREIVAAVAADVYGRPAERLRTFAVTGTNGKTTTSFLLAHLLGL 156

Query: 136 ICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +R GL    IG     I       RLTTP    L   L+++   GVT + +E SSH L
Sbjct: 157 LGRRVGL----IGTVELRIGDAVVPARLTTPEAPDLHALLAHMVEAGVTDLVMEVSSHAL 212

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           + HR+D ++    +FT+L +DH+D+H   + Y+ AK  LF     +   A++  DD + +
Sbjct: 213 ELHRVDPVRFDLAAFTHLTQDHLDFHGDLEHYYAAKASLFTPARARR--AVVSVDDEWGR 270

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--------- 305
            +   A  AG  V ++  +G+        A    + V    +   F    P         
Sbjct: 271 RLAGDARAAGIDVATLATRGEH----AAAAAWTVRDVVAGADAMSFTLTGPGDVALTTSL 326

Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHV-VPGRFEFVGTNSRGGRIYV 360
            +PG F V NA +A    I  G+ +A V+E L     L V VPGR E VG   R     V
Sbjct: 327 TMPGAFNVANAALALATAIEGGVPAADVVEALAAAGGLRVAVPGRMEVVGAEPR---CVV 383

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AH ++++ + L  +R  TSGR+ VV G  G+RD+GKRP MG+ A+  AD  IVTDD+P
Sbjct: 384 DFAHNTDAVGIALAELRATTSGRLHVVLGATGERDRGKRPAMGEAAVLGADAVIVTDDDP 443

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGN-------------RIEAIRTAIEMLNKQDVLVVAGK 467
             EDP ++RAE++ G     E                R  AI  A+     +D ++VAG+
Sbjct: 444 HDEDPAQVRAEVLAGALRAAETARAAGRHVDVREVAPRSAAIAAAVAGAAPEDTVLVAGR 503

Query: 468 GHETVHIVTNGE 479
           GHET+  V   E
Sbjct: 504 GHETIQEVAGEE 515


>gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 494

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 229/477 (48%), Gaps = 59/477 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++++ ++++DSR  + G IFVA  G   D H F    + QG   IVV+     QD +  +
Sbjct: 20  DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNRE---QDLNGDV 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140
                 ++V +T +  SL A  L+    H      VTGT+GK+S+A+ +  I ++     
Sbjct: 77  TQ----IIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +     +G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S+
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSE 246

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISVEGKDFDFLFPLP-- 307
            +   A      V + G             I N  Q     V  S++G  F+F  P    
Sbjct: 247 YL---ASVTPYEVFTYG-------------IDNDAQFRAINVEESLQGVKFEFDTPFGSY 290

Query: 308 -------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                  G+F + N + A     + G     ++E ++ L  V GR E +   S    + +
Sbjct: 291 QVESPYVGKFNISNIMAAMIAVWSKGATFEEIIEAVKSLEPVEGRLEVLDP-SLPIDLII 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT++ +  ++  ++     ++I + G  G+RD  K P MG +A   AD  I T DNP
Sbjct: 350 DYAHTADGMNKLIDAVKPFVKQKLIFLVGMAGERDMTKTPEMGSVAC-RADYVIFTPDNP 408

Query: 421 RSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            ++DP+ + AE+  G     ++E  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 409 ANDDPKMLTAELAKGATHSNYVEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIM 465


>gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
 gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
          Length = 494

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 221/472 (46%), Gaps = 49/472 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ ++++++DSR  + G IFVA  G   D H F    I QG   +VV+    L+      
Sbjct: 20  DKNVDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQGCSIVVVNRELELE------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140
                 ++V +T +  SL A  L+    H      VTGT+GK+S+A+ +  I ++     
Sbjct: 74  -GEVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +          +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDANAEAMTMEVSSHGLSLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDEFSH 246

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307
            +   A      V + G   +   + K         +  S++G +FD   P         
Sbjct: 247 YL---ASVTPYEVFTYGIDNEAQFMAK--------NINESLQGVEFDLSTPFGDYRVKSP 295

Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G F + N + A     + G     ++  +  L  V GR E +   S    + +DYAHT
Sbjct: 296 YVGRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPVEGRLEVLDP-SLPIDLIIDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +  ++  ++     ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP
Sbjct: 355 ADGMNKLIDAVKPFVKQKLIFLVGMAGERDMTKTPEMGSVAC-RADYVIFTPDNPANDDP 413

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + + AE+  G     ++E  +R E IR AIE+    D +V+A KG E   I+
Sbjct: 414 KMLTAELAKGATHDNYVEFDDRAEGIRHAIEVAEPGDTVVLASKGREPYQIM 465


>gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
 gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
          Length = 506

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 156/480 (32%), Positives = 237/480 (49%), Gaps = 41/480 (8%)

Query: 13  ELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL +QL S  P    E  +  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A+
Sbjct: 19  ELADQLGSSAPESAAE--VTGITHDSRAVRPGDLYAALPGARLHGADFVNQAAGLGAAAV 76

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSV 129
           +     + +  +    S  P+LVVD+ R  +   A+ +YG    ++L   +TGTSGK++ 
Sbjct: 77  LTDPTGAERAAA----SGLPVLVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTT 132

Query: 130 ASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184
           A  V+      GL + +  G   T+     D R+    TTP    L    + +  +GV  
Sbjct: 133 AYLVE-----GGLKTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEA 187

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
           V++E SSH L   R+DG     G FTNL  +H+++H   + YF AK +LF    PK    
Sbjct: 188 VAMEVSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLF---TPKRGKL 244

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302
            ++  DD Y + ++  A        + G+       + V         T+   +G+    
Sbjct: 245 GVVNVDDEYGRRLVNEATVPVVTYSAEGHPDADWRAEDVEVGQLDSTFTVVGPKGERISA 304

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--- 359
             PLPG F V N L A       G+D     + +  +  VPGR E V      G+ Y   
Sbjct: 305 KSPLPGPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDA----GQPYLAV 360

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH ++++E +L+ +R +T G++ +V GCGGDRD  KR  MG  A  LAD A++T DN
Sbjct: 361 VDYAHKTDAVESVLRALRKVTEGKLHIVLGCGGDRDTTKREPMGAAAARLADTAVLTSDN 420

Query: 420 PRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PRSEDP  I A ++ G   +P + E+G      +R  AI  A+      D ++VAGKGHE
Sbjct: 421 PRSEDPLAILATMLQGAASVPAY-ERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHE 479


>gi|306779455|ref|ZP_07417792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
 gi|308327593|gb|EFP16444.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
          Length = 425

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 141/401 (35%), Positives = 200/401 (49%), Gaps = 25/401 (6%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 6   RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 64

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 65  AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 123

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +   G+FTNL RDH+D+H +   YF AK  LF+ +   +   A++  DD   + +  RA
Sbjct: 124 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 183

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +A    ++V    +  H +           +Q   I   G        LPG + V N L
Sbjct: 184 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 239

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  +   +G+     +  L ++ V PGR E +    +G    VDYAH   +L  +L  +
Sbjct: 240 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 297

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
                 R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G 
Sbjct: 298 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 356

Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 357 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 397


>gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 572

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 148/478 (30%), Positives = 237/478 (49%), Gaps = 37/478 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL ++L +      E  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A++
Sbjct: 68  ELADRLGVEAAGTGE--VTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAAAVL 125

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130
              A + +  +  +    P+LV ++ R  +   A+ +YG+    +L   +TGTSGK++ A
Sbjct: 126 TDPAGAERAAATGL----PVLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTTTA 181

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186
             V+   + +G  +  IG   T+     D R+    TTP    L    + +  +GV  V+
Sbjct: 182 YLVEGGLRAAGRPTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVA 238

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAI 245
           +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF    P+ S   +
Sbjct: 239 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPERSHRGV 295

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304
           +  DD Y + ++  +        + G+     H + V     +     +  +G+      
Sbjct: 296 VNFDDEYGRRLLTESGVPVTSFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARA 355

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361
           PLPG F V N L A       G+D  +  + +  +  VPGR E V      G+ Y   VD
Sbjct: 356 PLPGPFNVANTLAAIVTLAVAGVDPQIAADGIAAVPGVPGRLERVDA----GQPYLAVVD 411

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH ++++E +L+++R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPR
Sbjct: 412 YAHKTDAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPR 471

Query: 422 SEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470
           SEDP  I A ++ G   +P   E+G+ +       AI  A+      D ++VAGKGHE
Sbjct: 472 SEDPLAILAAMLSGAAEVP-VHERGDVLVDADRASAIAAAVARAEPGDTVLVAGKGHE 528


>gi|239917866|ref|YP_002957424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413640|ref|ZP_06245382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839073|gb|ACS30870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
          Length = 585

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 151/506 (29%), Positives = 232/506 (45%), Gaps = 83/506 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR ++ G ++VA+ G +  G  F   A+  GA  ++  +A      +    ++
Sbjct: 55  VTGVSLDSRVVRPGDLYVAVPGARAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 113

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSV----ASFVQQICQRSGL 142
            P+L VD  R      A+R+YG   +    ++ VTGT+GK++     A+ ++ + +RSG+
Sbjct: 114 VPVLEVDAVRTAAGTVAARVYGGGGDAGPRLVGVTGTNGKTTTSFLSAALLEALGRRSGI 173

Query: 143 SSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                  T  I +  ++  + LTTP    L   ++ +  + V    +E SSH +   R+ 
Sbjct: 174 VG-----TILIRAGEREVPSTLTTPEATQLHALMALMREEQVDTAVMEVSSHAVAYQRIA 228

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE---VM 257
           G++     FTNL +DH+D H + Q YF AK  LF+    +   A+I  D          M
Sbjct: 229 GLRYAVAGFTNLTQDHLDMHGSMQEYFAAKAGLFDPA--RTDHAVITLDGGEGPRWGVAM 286

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-----------------QQVTI--SVEGK 298
            RA  A    L++G            A H+                   + T+  +  G+
Sbjct: 287 ARAAGAPVTTLALGPAAP---TPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGR 343

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--------------PG 344
           +      LPG F V NA +A  L +      A+  EHL+ L  V              PG
Sbjct: 344 ELRASVGLPGRFNVANAALAVLLVL-----HAVGEEHLDALAAVLDVPAGEGPLAAAVPG 398

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKR 399
           R E VG   R     VD+AH  + +   L+++        T GR ++VFG  GDRD+ KR
Sbjct: 399 RMEVVG---REPDAVVDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAGDRDRDKR 455

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------------GNR 445
           P+MG IA   AD+ IVTDD P SEDP  IRA I+ G     ++               +R
Sbjct: 456 PVMGAIAARAADVVIVTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRTVVIEEVADR 515

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHET 471
             AIR A+E+   QD +++AG+GHET
Sbjct: 516 FAAIRRAVELAGPQDGILLAGRGHET 541


>gi|134294642|ref|YP_001118377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
 gi|134137799|gb|ABO53542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
          Length = 512

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 151/488 (30%), Positives = 236/488 (48%), Gaps = 55/488 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +F+    +  D   FI  A+A+GA A++    Y  +  +A       
Sbjct: 30  QLHADTRSLQAGDVFLGYAVDGADNRAFIADAVARGAAAVL----YQPEGLAAAPAVPV- 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFV-------QQICQ---- 138
              V    +     AS  YG   + +LA  VTGT+GK+S   ++        Q C     
Sbjct: 85  AFAVPGLDQLAGEIASGWYGDPSDALLAIGVTGTNGKTSCTQWIAAALTALHQPCALIGT 144

Query: 139 -RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             SG+   Q+ PT            TTP    L ++L+ L   G   V++E SSH L Q 
Sbjct: 145 LGSGMPG-QLVPTG----------FTTPDAPQLQRSLARLRDAGAKAVAMEVSSHALHQG 193

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R++G       FTNL +DH+DYH+T  AY  AK +LF     +   A++  DDA  + ++
Sbjct: 194 RVNGTAFDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFTWRGLRA--AVVNRDDAAGRRLL 251

Query: 258 KRAHNAGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           ++      RV ++ Y           + +    V A        +     + D      G
Sbjct: 252 EKLAG---RVRTIAYGIGDAPSAGADRELVATDVRATAAGTAFRLRSSWGEADVEVGTLG 308

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTS 366
            F V N L   G  +A  +     +  + +L  V GR + +G   +     + +DYAHT 
Sbjct: 309 TFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRPQNDEPLVVIDYAHTP 368

Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++L+  L+ +R I +   GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE
Sbjct: 369 DALDKTLEALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSE 428

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP++I  +I+ G+    ++  RIE    AI  A+    ++DV+++AGKGHE    +  G+
Sbjct: 429 DPQRIIDQIVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GK 486

Query: 480 KKMSVDCD 487
           K+   D D
Sbjct: 487 KRTFSDQD 494


>gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
 gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
          Length = 489

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 237/491 (48%), Gaps = 32/491 (6%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +L+ F     + +I  +  DSR  +   IF  + G   DGH  I +AIA GA  IV+  +
Sbjct: 2   KLTDFFENVPDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHIDEAIANGA--IVIVHS 59

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQ 135
             ++  +  I   T I V D    F  +  S   Y  H   +  VTGT+GKSSVA  ++ 
Sbjct: 60  EPIEKINPDI---TYIKVKDVVHVFNQVADSFYDYPSHHMTMYGVTGTNGKSSVAWIIRN 116

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVE 188
           I         QI PT+ + + + +         + +P+   +   L  +   G+ + + E
Sbjct: 117 ILN-------QIEPTAYVGTISIEYNNVKLPPLVASPNIDEVHGILRDMVDAGIKNCAYE 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASS  +DQ RLD I      FTNL  DH+DYH T   YFNAK +LF++ L +E+ AI+  
Sbjct: 170 ASSIAIDQGRLDAIDFDVAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQ-LKEEAIAIVNV 228

Query: 249 DDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD      MK   +   +V + G  Y+  +  +     + +  + T+ +   D+     L
Sbjct: 229 DDPSG---MKIVQDTQAKVFTYGIDYEADY-RVTDYHLLKDSTRFTLHINDHDYRLETNL 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
              F +YN + A       G+    +  +++ L+ V GR E +  + +   + VD+AHT+
Sbjct: 285 IARFNIYNLVAAIAAIHQKGVSMDDIASYIQHLNQVEGRMERI-QDGQPFNLIVDFAHTA 343

Query: 367 NSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           + +E + +   +IT    RII + G  G RD  KRPI G+I     D+ I+T+D+ R E 
Sbjct: 344 DGIEKVCQYASSITPKDCRIIAITGSAGKRDTAKRPIFGEILDHYCDMIILTEDDSRGES 403

Query: 425 PEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             +I  +I  GI    ++   +R +AIR ++E+ ++ D ++V GKG+E       G +  
Sbjct: 404 VREIAEDIAKGIHHKNYVIIEDRYDAIRQSVELCSEGDTILVLGKGNEKFIAREFGRESY 463

Query: 483 SVDCDIIREIL 493
             D  I  E+L
Sbjct: 464 EGDDVICHEVL 474


>gi|119960821|ref|YP_947465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
 gi|119947680|gb|ABM06591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
          Length = 536

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/479 (28%), Positives = 229/479 (47%), Gaps = 40/479 (8%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P   ++R +  ++ +SR ++ G +++A+ G    G  F+PQA+  GA A+V   A + Q 
Sbjct: 31  PDASQDRGVTGITLNSRAVETGDLYMALPGASRHGADFVPQAVEAGAVAVVTDDAGARQ- 89

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---------ILAVTGTSGKSSVASF 132
            +       P+L+V   R  +   A+ +Y   P +               T+    + S 
Sbjct: 90  LALAGEQPVPVLIVPEPRTAVGRLAALIYRSQPADGGFPTLYGVTGTNGKTTTTYFINSL 149

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           ++ + ++ GL    IG    ++      + LTTP    +   L+ +  +G+   S+E SS
Sbjct: 150 LRALEKKPGL----IGTIEIVAGGEPIPSLLTTPESTDVHALLALMRERGLDAASMEVSS 205

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H +  HR+DG+      FTNL +DH+D H +   YF  K  LF     +   A++  DD 
Sbjct: 206 HAISYHRVDGVMFDVAGFTNLTQDHLDLHGSMDEYFRTKAELFTAGRARH--AVVTVDDD 263

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNK---QQVTIS-VEGKDFDFLFPL 306
           + +++ + A      + +    G       KV +I  +    +  +   +G+       L
Sbjct: 264 WGRQLAETADIPVTTLSTKPVDGSSSSTDWKVASITARGLGSEFELKHADGRTLRVHTGL 323

Query: 307 PGEFQVYNALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           PG+F V NA +A  + +A G+D     A +  H      VPGR + + T        VD+
Sbjct: 324 PGDFNVANAALATVMVLASGVDEHTLQAALDAHDPFTVSVPGRMQLISTEPAS---VVDF 380

Query: 363 AHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH  ++L   L+ +R+   G R+IVVFG  G RD+GKRP MG IA  LAD+ I++DD+P 
Sbjct: 381 AHNPDALSRALEAVRSPREGSRVIVVFGATGQRDKGKRPTMGAIAARLADVVIISDDDPH 440

Query: 422 SEDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            ED   IRAE++ G              IE   R  AI+ A++M   +D +++AG+GHE
Sbjct: 441 DEDAAAIRAEVLQGAHAARDSENLNSEIIESYPRDAAIKLAVDMATGKDTILIAGRGHE 499


>gi|119773490|ref|YP_926230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
 gi|119765990|gb|ABL98560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
          Length = 487

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/445 (31%), Positives = 208/445 (46%), Gaps = 17/445 (3%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR + AG +F+A+ G K DG  ++  A A+GA A +V +    +    +      I   
Sbjct: 26  DSRQLTAGGLFIAVPGYKTDGRAYLDAAFAKGAAAALVHTDDPDEHGKVSYEPGLCIAFF 85

Query: 96  DNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
              R+ +S  A + Y   +    ++ VTGT+GK+SV+  + Q+ +  G  +  +G     
Sbjct: 86  QLNRQ-VSAVARQYYALTRGKLRVVGVTGTNGKTSVSQLIAQLTELLGDKAAVMGTLGNG 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +    QD   TT   + +   L     QG    ++E SSHGL Q R++ +      FTNL
Sbjct: 145 LWGQLQDVGNTTADAVRVMADLYDFEHQGAKVCAMEVSSHGLVQGRVEAVPFEVAVFTNL 204

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSV 270
            RDH+DYH     Y  AK RLF       S  +I  DD   ++        GC      +
Sbjct: 205 SRDHLDYHGDMDNYAAAKRRLFA--FGSLSARVINLDDKVGEQWFD---GMGCATGFSCL 259

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G+       +     H      +   G        L G F + N L A      +G    
Sbjct: 260 GHAKADWRFENAHFHHAGFSANLVWPGGQKPLECRLLGAFNLSNLLAALCAMAQLGYQVP 319

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            ++    KL  VPGR E       G  + VDYAHT +++E  LK  R    G + +VFGC
Sbjct: 320 DLVAAAAKLEAVPGRMECF-PRKDGVSLVVDYAHTPDAIEQALKAARHHCEGALWIVFGC 378

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRI 446
           GGDRD+GKRP+M + A   AD  ++T DN RSEDP  I  ++  G+    E+     +R+
Sbjct: 379 GGDRDKGKRPLMAEAAEAFADCLVLTSDNARSEDPAVILEDMKAGLDA-PERALCMVDRV 437

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHET 471
            AIR A+ M    D++++AGKGHET
Sbjct: 438 AAIRHAVSMAKPGDLILLAGKGHET 462


>gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 483

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/497 (28%), Positives = 242/497 (48%), Gaps = 40/497 (8%)

Query: 11  FPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F ++I+ +S I   +  +  I  +++DSR       FVAI G+  DGH +I  AI +GA 
Sbjct: 10  FEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTYIASAIKKGAS 69

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKS 127
            I+ +   + ++  + IR N P       RK L+  ++ +Y        ++AVTG++GK+
Sbjct: 70  LIIHTEDVTCEEGISYIRVNDP-------RKALAQISNLIYDFPSKKMELVAVTGSNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           + +  +  +       S  IG   T ++   D+ +    TTP    + + L+    + + 
Sbjct: 123 TTSRLIAFLMGEIFGDSASIG---TNNAHVGDDIIPTSNTTPDITEVNRILAKCLEKNIH 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+++EASSHGLDQ RL G+ +  G FTNL  +H+DYH+T   YF AKM LFE    K + 
Sbjct: 180 HLALEASSHGLDQKRLYGLDIAYGIFTNLSEEHLDYHKTMDNYFKAKMILFEN--AKNTL 237

Query: 244 AIIYADDAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           A I  DD Y   +KE+  +         S  Y+ + I          K+   IS + +  
Sbjct: 238 ANI--DDPYGKRAKELFPKTITFAIDEESADYRAEDIV---------KKDGKISFKIRGV 286

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F+      +++YN L A      +G     + E  +K   +  RFE++  N  G  I +
Sbjct: 287 EFVLNKIANYEIYNTLAAVACLNQMGASMEDIGEAFKKFKGIKSRFEYI-ENDLGINIIL 345

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AHT  + E + +++       II VFG  GDR+   R ++G         +++T D+P
Sbjct: 346 DFAHTPRAYEALFESVP--KGSNIIAVFGINGDRNSEFRRLIGNACGKYKVFSVLTTDDP 403

Query: 421 RSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           + ++ + I  EII G+      ++ +  R +A+R AI+M    D + + GKG E      
Sbjct: 404 KFDNVDHINEEIIVGLDEYKADYVIRKERKDAMRYAIKMAKPGDYVFLLGKGEENFIKFH 463

Query: 477 NGEKKMSVDCDIIREIL 493
             EK    + + +RE+L
Sbjct: 464 GNEKTPYSERETLREVL 480


>gi|150020558|ref|YP_001305912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
 gi|149793079|gb|ABR30527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
          Length = 491

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 229/485 (47%), Gaps = 57/485 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +SS+S+ I+   +F+   G   D H  +      GAE  +V               + P 
Sbjct: 28  ISSNSKDIKENTLFICRKGFNFDSHKIVDDVARNGAEIFIVEEE----------IEDYPY 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ++V ++R   S+ A   + K  E ++   VTGT+GK++       I  + G+     G  
Sbjct: 78  ILVVDSRIAESIIADVFFQKPYEKLITFGVTGTNGKTTSVHLFHHIMHQFGIKGSISG-- 135

Query: 151 STISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           + ++    D   +  TTPS I + K +     +   + ++E SSH L Q+R++ I+    
Sbjct: 136 TVLNDIMGDKFYHHNTTPSAIEITKNMFKTVIEDGKYYAMEVSSHALSQYRVESIRYDIV 195

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+ RDH+D+HQT + Y  AK+ +   L P    AI+      + E++        RV
Sbjct: 196 GITNITRDHLDFHQTFENYKRAKLHILNLLKP-NGIAIV------NHELIHDIPKKNIRV 248

Query: 268 LSVG---------------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           ++ G               + G F  LK       K+ V+             L G+F  
Sbjct: 249 VTFGTDNNSDYVIHEIISNWSGIFFKLK--TPFGEKKVVS------------QLLGDFNA 294

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEM 371
           +N  +     + IG D   V+  +     V GR E +    + G  I +D+AHT ++LE 
Sbjct: 295 FNVTLVIAALVEIGYDIDDVISAISTFRGVDGRLEIISEAKKLGIEIVIDFAHTPDALEK 354

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + +IR +T GRII VFG GG  D GKRP+MG+IA   +DI I+T D+PR EDP KI  +
Sbjct: 355 AILSIRKLTKGRIITVFGAGGQSDVGKRPMMGEIASKYSDICIITTDDPRGEDPVKIIKD 414

Query: 432 IIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G + G +     +R EAI TAI + N+ D++++AG+GHE   +     K    D D+
Sbjct: 415 IEEGVVSGSLSLSIIDRREAIDTAITLANRGDIILIAGRGHEPYQVFDENYKVPFKDRDV 474

Query: 489 IREIL 493
             +I+
Sbjct: 475 AIDII 479


>gi|255505595|ref|ZP_05347097.3| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
 gi|255266835|gb|EET60040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
          Length = 524

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/477 (29%), Positives = 226/477 (47%), Gaps = 28/477 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ ++ +DSR ++ G +F  I G   DGH +  +   +GA          +      +  
Sbjct: 59  EVTDIVNDSRKVREGCLFFCIKGAVADGHKYAAEVAQKGA-------GVLVVQDDVQVPG 111

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V ++R  ++L A+  YG HP   L V G +G     +    I      +  ++G
Sbjct: 112 DVTVIKVADSRYAMALIAAAWYG-HPAEKLKVIGITGTKGKTTTTYMIKSILEAAGHKVG 170

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TI +   D  +    TTP    + K  + ++  G   V +E SS GL  HR  G   
Sbjct: 171 LIGTIEAIIGDKVIPASNTTPESTTIQKYFAEMAEAGCDCVVMEVSSQGLMLHRTVGFTF 230

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G FTNL  DHI    H+  + Y   K  LF++        I  ADDA+ + +++  H 
Sbjct: 231 EIGIFTNLEPDHIGPAEHENFEDYLRCKAMLFKQC----RHGIFNADDAHLEAILE-GHT 285

Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320
                   G +  F     ++ +      +   V GK +F     +PG+F +YN+L A  
Sbjct: 286 CDVETYGFGEKADFRASEAQLVSKPGYLGIAYHVTGKRNFFVEIDIPGKFSIYNSLAAIA 345

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +C   G++   ++  L+K  V  GR E +  +     + +DYAH + SLE +L  ++   
Sbjct: 346 VCDYFGVEEEKMIAALKKAKV-KGRIEMIKVSDEF-TLMIDYAHNAMSLESLLTTLKEYN 403

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
            GR++ VFGCGG+R + +R  MG+++   AD  I+T DNPR E+PE I A+I  GI    
Sbjct: 404 PGRLVCVFGCGGNRSRARRFEMGEVSGKYADFTIITSDNPRYEEPEAIIADIETGIAKTD 463

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +I+  +R EAI  AI      DV+V+AGKGHE    +   +  M     +I+EIL
Sbjct: 464 GKYIKITDRKEAIAYAIHHGQPGDVIVLAGKGHEDYQEICGVKHPMDERV-LIKEIL 519


>gi|145635584|ref|ZP_01791282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|145267146|gb|EDK07152.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 358

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 167/327 (51%), Gaps = 25/327 (7%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT S + +  +LS     G    S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+
Sbjct: 25  TTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQS 84

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AK RLF EL       +I ADD    + +    +A    ++V     F    KV
Sbjct: 85  MENYAAAKKRLFTEL--DTQIKVINADDEIGYQWLTELPDA----IAVSMNADF----KV 134

Query: 283 CAIHNKQQVTISVEGKDFDFLF-----------PLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +    + + I    K  D  F           PL G F V N L+     ++ G     
Sbjct: 135 GSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLEN 194

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L   + L  V GR E +   ++   + VDYAHT ++LE  L   R    G +  +FGCG
Sbjct: 195 LLATAKSLKGVYGRMEMIQYPNKP-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCG 253

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEA 448
           GDRD+GKRP+M ++A   A+  IVT DNPR+E   +I A+I+ G     + G   +R +A
Sbjct: 254 GDRDRGKRPLMAQVAEQFAETIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQA 313

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I+ AIE   + DV+++AGKGHE   I+
Sbjct: 314 IQFAIESAVENDVILIAGKGHEHYQII 340


>gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. m3-13]
          Length = 418

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 215/443 (48%), Gaps = 47/443 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKLQ        +LI  L  + +  +   +I+ +  DSR +  G +F  I G   DGH F
Sbjct: 1   MKLQ--------QLIQYLHRYEVSSKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117
             +A+ +GA AI+      +           P++VV +T + +++ A   + +  H  ++
Sbjct: 53  AQEAVNKGAVAIISEKPLDVA---------VPVIVVPDTMRAMAILADVFFQQPTHKLHL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ I Q     +  IG     I +     + TTP  + L  +   
Sbjct: 104 IGVTGTNGKTTTTHIIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQ 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +    V  V +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF  
Sbjct: 164 MVENKVDTVVMEVSSHALHMGRVYGCDFDVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSS 223

Query: 237 L-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           L     L K   A++ ADD  S ++ KRA     +V++ G       + +   I  K  V
Sbjct: 224 LGNSYNLAKPKYAVLNADDPAS-DIYKRA--TAAQVITYG-------INETSDIRAKN-V 272

Query: 292 TISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             S +G  FD ++          L G+F VYN L A        I    ++  +E +  V
Sbjct: 273 KTSAKGTTFDLVYDNKVVPINLKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGV 332

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGRFE +    +   + VDYAHT +SLE +LK  + ++   I  + GCGGDRD+ KRP+M
Sbjct: 333 PGRFEAIEA-GQDFTVIVDYAHTPDSLENVLKTTKQLSQNNIYCIVGCGGDRDRSKRPLM 391

Query: 403 GKIALDLADIAIVTDDNPRSEDP 425
             +A++ A  AI T DNPRSE+P
Sbjct: 392 AAVAVNYASKAIFTSDNPRSENP 414


>gi|114777867|ref|ZP_01452798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
 gi|114551858|gb|EAU54398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
          Length = 488

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 226/462 (48%), Gaps = 46/462 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR+++ G+  + +  ++     ++  A  QGA AI+            ++ S+
Sbjct: 19  IMGICDDSRYVKPGYAMICLPRSRAHVADYVEAAGKQGATAIIA--------VGVSVTSD 70

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+L + + ++   L   RL+       +   +TGT GK+SVA  +     R  L+ +Q 
Sbjct: 71  LPVLHLASMQQA-GLLLRRLFRTEEARTHFYGITGTDGKTSVAWML-----REALTRYQP 124

Query: 148 GPTSTISSF----AQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            P  +  +     A D+ L    TTPS + +   LS  +  GV  V+ E SSHG+ Q R+
Sbjct: 125 KPVWSCGTLGWLRAPDDILDIGNTTPSMLTMHAMLSSANLGGVHSVACEISSHGIAQERI 184

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI      +TN+G DH+  H   + Y   K    +         +  AD A   ++ + 
Sbjct: 185 AGIDFHTAIWTNMGHDHLQDHGGYETYLKTKAGFVQATAAHGGNVVANADHA---DIREH 241

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI----SVEGKDFDFLFPLPGEFQVYN- 314
           A    C      + G  ++   V     ++   +    S EG+      PL G+F   N 
Sbjct: 242 APEHAC------WYGHGLYRDDVDLAWEQELPGLLRLKSAEGEVVIEDIPL-GDFHAENV 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A VA  L +++ I  A + + L ++   PGR + V      G++Y+DYAHT  +L+  L+
Sbjct: 295 ACVALTLMVSMAIPLADLPKLLGRISAPPGRMQEVTAGY--GQVYIDYAHTPEALDRCLQ 352

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R +T  R++VVFGCGG+RD+ KRP MG IA++ AD+  +T DNPR E P  I +EI  
Sbjct: 353 AARKLTRARLMVVFGCGGERDREKRPQMGAIAVEQADLVWITSDNPRGEMPAVIASEIEQ 412

Query: 435 GI--PGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G+  P   E   + +R +AI  AI  L + D+L++AGKGHE 
Sbjct: 413 GMSQPYAAEVRLQLDRDKAIGEAIATLAEGDLLIIAGKGHEA 454


>gi|160915595|ref|ZP_02077806.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
 gi|158432715|gb|EDP11004.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
          Length = 484

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 224/451 (49%), Gaps = 34/451 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR ++   +FVAI          I +A+ +GA  +     ++         
Sbjct: 30  RIVRGISDDSREVEQDMLFVAIKATAMKKE-HILEALTKGAVVLCEKQPFA--------- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC--QRSGLSS 144
            +  I    + ++ L L    LYG++     +AV+GT+GK+SVAS++ Q+   Q++ +  
Sbjct: 80  -DANIYEAASLKQKLILLLDTLYGRYEACQCIAVSGTNGKTSVASYIAQLLYMQKARVMV 138

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G     + F + +  TTP  I LAK       + +TH+ +E SSH + Q R+  I+ 
Sbjct: 139 IGTGFVKGETIFFETSN-TTPGLIALAKYFDIARQKQITHIVMEVSSHAIAQERIARIRF 197

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263
            A  FTN+  DH+DYH T+  Y   K +L   L  K+S  IIY AD  Y   ++   H  
Sbjct: 198 DAVVFTNITADHLDYHITKTHYRFTKFKLANYL--KKSGVIIYNADYEY---MLPLVHMQ 252

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R +S G     I ++ V  + ++  +  S++G  +     L G   VYN   A     
Sbjct: 253 SHRCVSYGLGAAHIPIEHV--VLSESDIRFSLQG--YKIRAHLLGLMNVYNVAAALTFMR 308

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              ++   + E +EKL  V GR E V       ++++DYAHT+ +L+ +L   + +  GR
Sbjct: 309 INDVEYEQLQEDVEKLRAVKGRLEVVYQGK--FQVWIDYAHTAAALKEVLSFAKQVAKGR 366

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----EKIRAEIIHGIPGF 439
           +I + GCGG+RD  KRPIM +IA+  +D+AI T DNPR E      + + AE       F
Sbjct: 367 VISIVGCGGNRDVKKRPIMAEIAVKYSDVAIYTSDNPRFERVCDILKDMHAERFLNACVF 426

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               +R  AI+ A+++    D++V+ GKG E
Sbjct: 427 ---EHRYYAIKHAVKIAQNSDIIVITGKGSE 454


>gi|239626579|ref|ZP_04669610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516725|gb|EEQ56591.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 515

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 233/501 (46%), Gaps = 44/501 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ------ 80
           + +++EV  DSR    G +FV + G + D H F+P  +  G   +V       +      
Sbjct: 20  DTEVSEVVYDSRKAAPGAVFVCMAGTRVDSHRFVPDVLKAGVRVLVTERGIEEELKKAKE 79

Query: 81  --DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQ 135
               +    S   +L   + R  L+L ++  +G +P   +   G +G     +    ++ 
Sbjct: 80  EGGLTEEDLSEVTVLQTGDGRHALALLSAARFG-YPATKMVTIGVTGTKGKTTTTHMIKT 138

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I + +G     IG T T I         TTP    L +A + ++  G  ++ +E SS G+
Sbjct: 139 ILEAAGKKVGMIGTTGTVIGDKVTPTMNTTPESWQLHQAFAQMADSGCQYMIMEVSSQGI 198

Query: 195 DQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             HR+DGI    G FTN+  DHI  D H     Y   K RL    L      ++  +D++
Sbjct: 199 KMHRVDGITFDYGIFTNISPDHIGPDEHADFAEYLYCKSRL----LNMCRIGLVNRNDSH 254

Query: 253 SKEVMKRAHNAGCRVLSV------------GYQGKFIHLKKVCAIHNKQQV--TISVEGK 298
            ++++K   +A C + +             G  G       V  +     V     V+G+
Sbjct: 255 FEDIIK---DADCELYTYSVTEERGGLHGSGESGADFTASDVRYVSQPDFVGTEFDVKGR 311

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + D    +PG F V NAL A  +C  +G+    V   LE + V  GR E V T++R   
Sbjct: 312 YEMDVRLGIPGLFNVDNALAAVSVCSFLGLKKESVSRALEHIRV-NGRMEIVHTSARC-T 369

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAH + S+E +L  +R     R++VVFGCGG+R + +R  MG+I   LAD++IVT 
Sbjct: 370 VLVDYAHNAVSMESLLTTLRQYHPKRLVVVFGCGGNRSKDRRYTMGEIGGRLADLSIVTA 429

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DN R E  E I A+I   I      F+E  +R EAI  +I      D++ V GKGHE   
Sbjct: 430 DNSRYEKVEDIIADIRGSIEKTGGAFLEIPDRREAIEYSISHAMPGDMIAVIGKGHEDYQ 489

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            + NG +   +D ++I E++G
Sbjct: 490 EI-NGVRHHFLDREVIEEVVG 509


>gi|87125588|ref|ZP_01081433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
 gi|86166888|gb|EAQ68150.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
          Length = 503

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 156/485 (32%), Positives = 247/485 (50%), Gaps = 32/485 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +P Q     I  ++ DSR +  G +F+ + G + DG  F P+A+A GA A V+  A +  
Sbjct: 16  WPDQLANVPIESITCDSRCVSRGSLFLGLPGVRVDGGSFWPRALADGAAAAVIGPAAAAV 75

Query: 81  DFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136
                     P+LVV +   +++   A+  + + P +   ++ VTGT+GK++    ++ +
Sbjct: 76  QPPG---PEDPVLVVPEPVAQWIGELAAAFW-QRPSSRMTLIGVTGTNGKTTTTHLIEHL 131

Query: 137 CQRSGLSSFQIG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             ++G  +   G      P  +I++       TT     L   L+   + G    ++E S
Sbjct: 132 AAQAGRPAALFGTLVNRWPGHSITATH-----TTAFADRLQAQLAEAVAGGTQVAAMEVS 186

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKES-PAIIYA 248
           SH L+Q R+ G +     FTNL +DH+DYH + QAYF AK  LF E LL  +   A++  
Sbjct: 187 SHALEQQRVAGCRFAGAVFTNLSQDHLDYHPSMQAYFEAKALLFAEPLLASDGVRAVVTM 246

Query: 249 DDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD + +++ +R  +   R  L    + +      V      +   I+ +G+   F  PL 
Sbjct: 247 DDPWGRQLAERLGDRCWRCSLEPDQEAELTMTDLVMRSSGVEGRLITPKGEG-RFASPLV 305

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYA 363
           G F + N + A  +    G+   L+L+ L     VPGR E V   S        + VDYA
Sbjct: 306 GRFNLMNLMQAVAVLQQQGLPLPLLLKGLGSFRGVPGRMERVVVASAAAAQLPAVLVDYA 365

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + L+  L+  R    GR+I VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+E
Sbjct: 366 HTPDGLKNALEACRPFVEGRLICVFGCGGDRDRGKRPQMASIAAKLADRVVVTSDNPRTE 425

Query: 424 DPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP++I A+++ G+P   +   +G+R  AI  A+      D++++AGKGHE   I+  G +
Sbjct: 426 DPQQILADVVEGLPSSTDCVVEGDRAAAIAAAVAEAKPGDLVLIAGKGHEDYQIL--GTE 483

Query: 481 KMSVD 485
           K+  D
Sbjct: 484 KVHFD 488


>gi|291296876|ref|YP_003508274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
 gi|290471835|gb|ADD29254.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
          Length = 481

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 148/477 (31%), Positives = 229/477 (48%), Gaps = 41/477 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAI 64
            P L     +F       ++  V+ DSR +Q G++FVAI G         DGH +IPQAI
Sbjct: 1   MPTLQELFGLFGQTAPALEVRGVTHDSRLVQPGFVFVAIPGVPLPSRKPFDGHDYIPQAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
             GA A+V      L         + P L V + R  L+  ++  +G   +   +L VTG
Sbjct: 61  QNGAVAVVGMRELHL---------SVPYLRVADARAALADLSAAFWGYPAQRLELLGVTG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSY 176
           + GK++VA  +  + QR+      +G  ST+     +  L      TTP    + + L  
Sbjct: 112 SKGKTTVAVLLHHLLQRA---RPPVGRLSTVGIKIGEEELFLPGHFTTPEAPQVQEMLHR 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G     +E SSH L   R+ G++   G FTNL +DH+D H + + YF  K +L E 
Sbjct: 169 FVQAGCRQAVLEVSSHALALERVRGLEYRVGVFTNLYQDHLDLHGSMENYFAEKKKLLE- 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   A++ +D+ +++ +  R         S G QG +     V +    +   +S  
Sbjct: 228 ---RSRFAVVNSDNPWTQTLRGRPQT-----WSYGQQGDWQAHNLVESSTGLEFEVVSPM 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+ F    P+ G F   NAL A      +G+    + E L     VPGR + V   +   
Sbjct: 280 GR-FAVRLPMVGRFNAENALAAMAAAAQVGLSVEQIQEGLAGFPGVPGRMQLV--QAAPF 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           R+ VD+AHT  SLE  L+ +R  T GR++VV G  G++D  +R  +G++A  LAD+AI T
Sbjct: 337 RVVVDFAHTGASLEAALQTLRPTTQGRLLVVIGAAGNQDPSRRVGIGQVAARLADLAIFT 396

Query: 417 DDNPRSEDPEKIRAEI--IHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +++ R+E  E I   +   HG P  ++   +R EAIR AI+     D L+ +GKGHE
Sbjct: 397 EEDHRTEPLEAILEAMAQAHGDPRRYVLIPDRREAIRYAIQEAQPGDTLLFSGKGHE 453


>gi|257438093|ref|ZP_05613848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199424|gb|EEU97708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 492

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 148/486 (30%), Positives = 233/486 (47%), Gaps = 36/486 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +  P  + Q S+      + ++ ++  DSR    G  FV IVG + D H F 
Sbjct: 1   MKLEQLL-EGVPFTLVQGSL------DTEVQDIIYDSRKAAPGLAFVCIVGTQRDSHEFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
               A+G   +V+       D   +      ++ V+++R  ++L +  L+G       ++
Sbjct: 54  ADCAAKGVSVLVIQ-----HDIDLSAMPGVTVVKVESSRYAMALMSGNLFGNPSRQMTMI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ + + +G     IG          Q+   TTP    L K     
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGKKVGMIGTNGIYFMGCHQETANTTPESYELQKTFRQF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G     +E SS GL   R+ G+    G FTNL  DHI    H+T + Y + K +LF 
Sbjct: 169 LDAGCDVALMEVSSQGLMMDRVAGVHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFR 228

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVT 292
                    ++  DD  + E +   H   C++++ G   K  +  + C +   H+   V 
Sbjct: 229 RC----DVGVVNIDDE-NTEALLEGHT--CKLVTYGRSEKADYRAEGCELLRTHDFLGVA 281

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V G+D  D    +PGEF VYNAL A  +   +G+  A + E L K  VV GR E V  
Sbjct: 282 FHVSGRDNMDVRVNMPGEFSVYNALAALAVGKVLGLPDAAIHEGLGKC-VVKGRVELVPI 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            S+   I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+    +AD
Sbjct: 341 -SKKFTILLDYAHNEVSTESLLTTLRAYHPHRLVVVFGCGGNRSKLRRYGMGETCAKMAD 399

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +I+T+DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V 
Sbjct: 400 FSILTEDNNRFEKIEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVI 459

Query: 466 GKGHET 471
           GKGHET
Sbjct: 460 GKGHET 465


>gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
 gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
          Length = 477

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 238/507 (46%), Gaps = 54/507 (10%)

Query: 11  FPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F ++I+ +S I   +  ++ I +V++DSR +  G IFVAI G+  DGH +I  AI +G+ 
Sbjct: 4   FEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEKGSS 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKS 127
            I+ ++    ++  + I+   P       RK L+  ++ +Y       +++AVTG++GK+
Sbjct: 64  LIIHTADIKREEGISYIKVTDP-------RKTLAQISNLIYDFPSKKMDLVAVTGSNGKT 116

Query: 128 SVASFVQ-----------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + +  +             I   + +   +I PTS           TTP    + + L+ 
Sbjct: 117 TTSRLISFLMGEIFGESASIGTNNAVVGDEIIPTSN----------TTPDITEVNRILAK 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              + + H+++EASSHGLDQ RL G+ +  G FTNL  +H+DYH+T   YF AKM LFE 
Sbjct: 167 CLDKNIHHLALEASSHGLDQKRLYGLDISYGIFTNLSEEHLDYHKTMDNYFKAKMILFEN 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTI 293
                   I   DD Y K+  +   N     +   +  Y+ + I          K+   I
Sbjct: 227 A----KTTIANIDDPYGKKAKELFSNTVTFAIDEKNADYRAEDIR---------KEDGKI 273

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S + K  +F+      +++YN L A      +G     +    +K   V  RFE++  N 
Sbjct: 274 SFKIKGCEFVIRKIANYEIYNTLAACACLNQMGASMEEIAAAYKKFKGVKSRFEYI-END 332

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  I +D+AHT  + E + +++      + I VFG  GDR+   R ++G         A
Sbjct: 333 LGINIILDFAHTPRAYEALFESVP--EGAKKIAVFGINGDRNAHFRRLIGNACGKFDTFA 390

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           ++T D+P+ +D + I  EII G+      ++ K +R +A+  A       D + + GKG 
Sbjct: 391 VLTTDDPKFDDIDHINEEIIVGLDDYKQAYVIKKDRTDAMEYAFRKARPGDYVFLLGKGE 450

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           E        EK    + + I++ L  I
Sbjct: 451 ENFMKYHGNEKTPYSERETIKKALARI 477


>gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 476

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 235/504 (46%), Gaps = 43/504 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL DL+ K     I  L +      + K+  V+++S  +  G+IFVA+ G+  DGH +I
Sbjct: 2   IKLSDLVRK-----IEYLDV--KHGADFKVRAVTNNSLKVGEGFIFVAVKGSIFDGHKYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI +GA+A+V +     ++    IR   P   +      ++ F S        +++ V
Sbjct: 55  DEAIKKGAKAVVHTEDVEYREDITYIRVFDPRQTLAEISNLITDFPSEKL-----SVIGV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKA 173
           TGT+GK++ +  +  + ++        GP + I +          +   TTP    + + 
Sbjct: 110 TGTNGKTTTSKLIAYLIEKV------FGPCANIGTDGANVGGEIIETSNTTPDITEINRI 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L     +G+ +V++EASSHGL Q RL G++   G F NL  +H+DYH+T  AYF AKM L
Sbjct: 164 LEKCVEKGIKYVTLEASSHGLVQKRLAGVRFKVGIFNNLSTEHLDYHKTMDAYFKAKMIL 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           FE         I   DD +     K+A       LS G   K  +++        + ++ 
Sbjct: 224 FE----NSEITIANIDDPWG----KKAVELFPTTLSFGKDEK-ANIRATDISKTDKGISF 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++G   DF      +F++ N L A     ++G     + E +     V  RFE++  N 
Sbjct: 275 KIDG--VDFFIRTIADFELNNYLAAISTLKSLGASLTELSEVITDFPGVGSRFEYI-END 331

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +G  I VD+AHT  + E I K++      + I VFG  GDR+   R ++GK   D    A
Sbjct: 332 KGLNIIVDFAHTPRAFEEIFKSLP--RDKKKIAVFGIQGDRNPEFRNLIGKTVSDYGIYA 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           IVT D+P+ +  E I  +I+ G+      +    +R EAI   + M    D ++  GKG 
Sbjct: 390 IVTTDDPKFDTYENISKDIVAGMAENYGAYTLIKDRKEAIEAGLRMAKPGDYVLFMGKGE 449

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +   EK    +   IRE L
Sbjct: 450 ENFIKLHGNEKTPWNEKATIRETL 473


>gi|115350512|ref|YP_772351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
 gi|115280500|gb|ABI86017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
          Length = 512

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 203/409 (49%), Gaps = 38/409 (9%)

Query: 105 FASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--- 159
            AS  YG   +++LA  VTGT+GK+S   ++      + L++    P + I +       
Sbjct: 98  IASGWYGDPSDSMLAIGVTGTNGKTSCTQWIA-----AALTALHQ-PCAVIGTLGSGMHG 151

Query: 160 ----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                  TTP    L ++L+ L   G   V++E SSH L Q R++G       FTNL +D
Sbjct: 152 HLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDIAVFTNLTQD 211

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--- 272
           H+DYH T  AY  AK +LF     +   A++  DDA  + ++++   AG RV ++ Y   
Sbjct: 212 HLDYHGTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKL--AG-RVRTIAYGIG 266

Query: 273 ------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                   + +    V A        +     D D      G F V N L   G  +A  
Sbjct: 267 DAQAPDADRELVALDVRATATGTAFHLRSSWGDADVEVGTLGAFNVSNLLAVLGSLLAAD 326

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITS--- 381
           +     +  + +L  V GR + +G   +     + +DYAHT ++LE  L  +R I +   
Sbjct: 327 VPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAAARG 386

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439
           GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I G+  P  
Sbjct: 387 GRLVCMFGCGGDRDATKRPLMGVIAERLADEVVVTSDNPRSEDPQRIIDQVIAGMTAPDH 446

Query: 440 IEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             +  +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 447 ARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|170731878|ref|YP_001763825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815120|gb|ACA89703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia cenocepacia
           MC0-3]
          Length = 515

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 153/483 (31%), Positives = 235/483 (48%), Gaps = 42/483 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   F+  A+A+GA A++          +A       
Sbjct: 30  QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVAL 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFV-------QQICQRSGL 142
            +   +  +     AS  YG   +++LA  VTGT+GK+S   ++        Q C   G 
Sbjct: 90  AVPALD--QLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVIGT 147

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
               +      S F      TTP    L ++L+ L   G   V++E SSH L Q R +G 
Sbjct: 148 LGTGMPGQLVPSGF------TTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRANGT 201

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH T  AY  AK +LF     +   A+I  DDA  + ++++   
Sbjct: 202 AFDVAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVINRDDAAGRRLLEKLAG 259

Query: 263 AGCRVLSVGY----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQVY 313
              RV ++ Y           +++ A+  +  VT     +     D D      G F V 
Sbjct: 260 ---RVRTIAYGIGDAPAPDADRELVALDVRATVTGTAFRLRSSWGDADVEVGTLGTFNVS 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371
           N L   G  +A  +     L  +E+L  V GR + +G   +     + +DYAHT ++LE 
Sbjct: 317 NLLAVLGALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 376

Query: 372 ILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L  +R I +   GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I
Sbjct: 377 TLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHI 436

Query: 429 RAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             +++ G+    ++  RIE    AI  A+    ++DV+V+AGKGHE    +  G+K+   
Sbjct: 437 IDQVVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFS 494

Query: 485 DCD 487
           D D
Sbjct: 495 DQD 497


>gi|260437320|ref|ZP_05791136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810232|gb|EFF69437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 490

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 223/457 (48%), Gaps = 32/457 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT--IR 87
           I  +  DSR   A  +FV + G   DGH +I     +G  AIVV      +D   T  ++
Sbjct: 23  IENLVYDSRKAGALDVFVCVTGAVSDGHTYISDVAGKGVLAIVVQ-----KDIEVTEELK 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSS 144
             T I   D TR  L+L ++  +  +P   L   G +G     +    ++ I ++  + +
Sbjct: 78  DITLIKTAD-TRYALALMSAAFF-DYPAKKLKTIGITGTKGKTTTTFMIRDILEKCNIKA 135

Query: 145 FQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   TI       ++ TTP    + K  S +   G + V +E SS  L  +R  GI 
Sbjct: 136 GLIGTNETIIGDEHIPSKNTTPESFLIQKYFSQMVEAGCSCVVMEVSSQALMLNRTAGIL 195

Query: 204 LIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
              G FTN+  DHI  + H + + Y   K RLF++ +      I  AD  Y  ++M+  H
Sbjct: 196 FDIGVFTNIEPDHIGPNEHASFEEYMECKSRLFKQCVH----GIGNADSEYFDKIME-GH 250

Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG---KDFDFLFPLPGEFQVYNALV 317
              C + + G + K  +  + +  IH    +T S      ++ +    LPGEF VYN+L 
Sbjct: 251 T--CTLETYGIKNKADLKAENIRYIHEGGNITTSYNTTGTRELNIKLTLPGEFSVYNSLC 308

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +     +D  L+L+ L    V  GR E V   S    + +DYAH + SLE +L  +R
Sbjct: 309 AIAVSEHFNVDDKLLLDALYNTRV-AGRVEPVKV-SDDFIVMIDYAHNAMSLESLLSTLR 366

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                RI+ +FGCGG+R + +R  MG+++  +AD+ I+T DNPR EDP  I  +I  GI 
Sbjct: 367 EYNPNRIVCLFGCGGNRSKLRRFEMGEVSGRMADLTIITSDNPRDEDPVLIMQDIETGIK 426

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                ++   +R EA++ AIE   K D++V+AGKGHE
Sbjct: 427 KTSGSYVMMEDRGEAVKYAIEHGEKGDIIVLAGKGHE 463


>gi|167586014|ref|ZP_02378402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ubonensis Bu]
          Length = 512

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 226/475 (47%), Gaps = 29/475 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +F+A   +  D   FI  A+A+GA A++        D  A   +   
Sbjct: 30  QLHADTRSLEAGDVFLAYAVDGADNRAFIADAVARGAAAVLYQP-----DGLAAAPAAPV 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   +++ AV  TGT+GK+S   ++             IG 
Sbjct: 85  ALAVPALNELAGDIASGWYGDPSDSLFAVGVTGTNGKTSCTQWIAAALTALDRPCALIGT 144

Query: 150 -TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             S +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T  AY  AK +LF     +   A++  DDA    ++  + +   R +
Sbjct: 205 FTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGSRLLA-SLSGQVRTI 261

Query: 269 SVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           + G          + +    V A        +     D D      G F V N L   G 
Sbjct: 262 AYGIGDAPAAGADRELSAHDVRATATGTAFRLRSSWGDTDVEVGTLGTFNVSNLLAVLGT 321

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTI 379
            +A  +     L  + +L  V GR + +G   +     + +DYAHT ++LE  L  +R I
Sbjct: 322 LLAADVPFDAALAEVARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPI 381

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  +I+ G+
Sbjct: 382 AVARGGALVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQIVAGM 441

Query: 437 PGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
               +   RIE    AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 TA-PDNARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|295839427|ref|ZP_06826360.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
 gi|295827472|gb|EFG65414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
          Length = 470

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 146/461 (31%), Positives = 230/461 (49%), Gaps = 42/461 (9%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F  QA + GA A +   A + +  +A      P+LVV + R  +   A+R+YG   +
Sbjct: 14  GADFAAQAASLGAVAALTDPAGAERVLAA----GRPVLVVGDPRGRMGALAARIYGNPGD 69

Query: 116 NIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIY 169
            +L   +TGTSGK++ A  ++   + +G S+  IG   T+ +   D RL    TTP    
Sbjct: 70  GLLQIGITGTSGKTTTAYLMEGGLRAAGHSTGLIG---TVETRIGDERLKSERTTPEATD 126

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L    + +  +GV  V++E SSH L   R+DG+      F NL  +H+++H   + YF A
Sbjct: 127 LQALFAVMRERGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQA 186

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCA 284
           K +LF     +    ++  DDAY + ++  A        + G     ++ + + ++   +
Sbjct: 187 KAQLFTRARSRRG--VVNRDDAYGRRLVAEAEVPIVTFSAEGHPDADWRAEDVEIRATDS 244

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +       +  +G  +    PLPG F V N L A       GID     E +  +  VPG
Sbjct: 245 VFT----VVGPDGSRYPARAPLPGAFNVANTLAAVAALAEAGIDPGRAAEGIGAVPGVPG 300

Query: 345 RFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           R E V      G+ Y   VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  
Sbjct: 301 RLERVDE----GQPYLAVVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGP 356

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTA 452
           MG  A  LAD A++T DNPRSEDP  I A ++ G   +P   E+G+ +       AI   
Sbjct: 357 MGAAAARLADTAVLTSDNPRSEDPLAILAAMLAGAAEVP-VHERGDVLVEADRAAAIAAV 415

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +      D +++AGKGHE    V NG  +   D ++++E +
Sbjct: 416 VARAEPGDTVLIAGKGHEQGQDV-NGVVRPFDDREVLKEAI 455


>gi|253580142|ref|ZP_04857409.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848661|gb|EES76624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 491

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 237/472 (50%), Gaps = 32/472 (6%)

Query: 14  LINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+ +L    +Q   ++++  V  DSR ++ G +F+ I G   DGH F+P  +A+GA+ ++
Sbjct: 12  LLEKLEYTCLQGSTDQEVKNVVYDSRKVEEGSLFICIRGAVVDGHKFVPDVVAKGAKVLI 71

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS- 131
           V  A    +       +  +++V +TR  ++  ++  +G   E +  +  T  K    + 
Sbjct: 72  VEEAVEAPE-------DVTVILVKDTRYAMAFISAAYFGYPAEKLKTIGITGTKGKTTTT 124

Query: 132 -FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186
             V+ I + +G   +++G   TI +   D  +    TTP    + +    ++  G   V 
Sbjct: 125 YMVKSILENAG---YKVGLIGTIEAIIGDKVIPAKNTTPESYVIQEYFHEMAEAGCDCVV 181

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS GL  HR  G     G FTN+  DHI  ++ +   F+  +R    LL +    I+
Sbjct: 182 MEVSSQGLMLHRTQGFVFDFGIFTNIEPDHIGPNEHKD--FDDYLRCKSLLLKQCKVGIV 239

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK---DFDF 302
             DD + +++++  H   C + + G+  +  +  +    +  K  + IS   K   DF  
Sbjct: 240 NRDDEHFEKIIE-GHT--CSLETYGFSPEADLRAEDAKLVGGKGYLGISYHLKGLLDFHV 296

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG+F +YN+L A  +C    +    +L+ L K+  V GR E V   S    + +DY
Sbjct: 297 EIDIPGKFSIYNSLTAIAICRHFKVSEENILKAL-KVAKVKGRIEMVKV-SDDFTLMIDY 354

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH + +LE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNPR 
Sbjct: 355 AHNAMALESLLTTLKEYHPHRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTIITSDNPRD 414

Query: 423 EDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           E+P+ I  +I  G+      ++E  +R EAI  AI      D++V+AGKGHE
Sbjct: 415 EEPQAIIDDIKIGMAKTDGKYVEIPDRKEAIAYAIHHGEPGDIIVLAGKGHE 466


>gi|157164782|ref|YP_001467685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter concisus 13826]
 gi|112800816|gb|EAT98160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter
           concisus 13826]
          Length = 427

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 147/472 (31%), Positives = 219/472 (46%), Gaps = 67/472 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DS   + G  FV    N +    F+  A   GA+ I             T+     +
Sbjct: 10  ITDDSNECEQGAYFVQTTANAK----FVEHAAKNGAKII-------------TLEECKKL 52

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L +D   K                I+ +TGT+GK++ A+ + +  +  G    + G + T
Sbjct: 53  LKIDENLK----------------IVGITGTNGKTTTAAAIYETLRNLGK---KCGLSGT 93

Query: 153 ISSFAQ----DNRLTTPSPIYLAKALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             +F +    D++  T S I   K LSYL   S QG  +  +E SSH + Q R++ +   
Sbjct: 94  RGAFIEGEQIDDKALTTSAIL--KTLSYLKAASEQGCEYFVMEVSSHAIAQKRIESLNFA 151

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH++ + Y   K   F++    ES  +I  DD   K   K A+    
Sbjct: 152 LKIFTNLTQDHLDYHKSMEEYARVKSSFFDD----ESVKLINIDDGGVKFNPKNAY---- 203

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG-LCIA 324
              ++     F  +  V  + +     I     D +    L GEF +YN + A G +C+ 
Sbjct: 204 -TYAIKKPASFAPI--VYGLKDGIDAVIKTPNGDVEIDSSLQGEFNLYNLIAALGAVCLL 260

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
              D+A + + + K   V GR E V T+     + VD+AHT + +E +L ++R +    +
Sbjct: 261 ERPDAAALSKAISKFKGVSGRMEVVSTDPL---VIVDFAHTPDGIEKVLNSLRHLN---L 314

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441
           I VFG GGDRD+ KRP MG IA   A I IVT DNPRSE+PE I  EI  G+      I 
Sbjct: 315 IAVFGAGGDRDRTKRPKMGAIAQKYARICIVTSDNPRSEEPESIIDEICAGMSQNENLIR 374

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             NR EAI  AI  L     LV+ GKG E    +  G K    D +++ E+L
Sbjct: 375 NANRKEAIALAISKLEPGWALVILGKGDEPYQEI-KGVKHPFSDKEVVIELL 425


>gi|145630233|ref|ZP_01786015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984514|gb|EDJ91937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 358

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 167/327 (51%), Gaps = 25/327 (7%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT S + +  +LS     G    S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+
Sbjct: 25  TTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQS 84

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AK RLF EL       +I ADD    + +    +A    ++V     F    KV
Sbjct: 85  MENYAAAKKRLFTEL--DTQIKVINADDEIGYQWLTELPDA----IAVSMNADF----KV 134

Query: 283 CAIHNKQQVTISVEGKDFDFLF-----------PLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +    + + I    K  D  F           PL G F V N L+     ++ G     
Sbjct: 135 GSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLEN 194

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L   + L  V GR E +   ++   + VDYAHT ++LE  L   R    G +  +FGCG
Sbjct: 195 LLATAKSLKGVCGRMEMIQYPNKP-IVIVDYAHTPDALEKALIAAREHCQGELWCIFGCG 253

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEA 448
           GDRD+GKRP+M ++A   A+  IVT DNPR+E   +I A+I+ G     + G   +R +A
Sbjct: 254 GDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQA 313

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I+ AIE   + DV+++AGKGHE   I+
Sbjct: 314 IQFAIESAVENDVILIAGKGHEHYQII 340


>gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
 gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
          Length = 503

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 145/470 (30%), Positives = 222/470 (47%), Gaps = 31/470 (6%)

Query: 24  QW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +W +E     + +DSR +Q G  F+A  G+  DG  F+  A+A GA   +V +    +  
Sbjct: 13  RWLQEWTTGTLRTDSRLVQRGDAFIAWPGHATDGRRFVKAALAAGAATCLVEA----EGV 68

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQ----I 136
            A    +  I  +   +      A   +G+  +   ++A TGT+GK+S A +  Q    +
Sbjct: 69  DAHGFDDARIGALPGLKAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLL 128

Query: 137 CQRSGL-SSFQIG--PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +R G+  +  IG  P     +      LTTP P+ L   L  ++  G    ++EASS G
Sbjct: 129 GRRCGVVGTLGIGEPPLPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIG 188

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           + +HRL  +++    FTN  RDH+DYH +  AY+ AK  LF    P    A +  DDA  
Sbjct: 189 IVEHRLAALRIEVALFTNFTRDHLDYHGSMDAYWAAKRVLFG--WPGLKAAAVNLDDAQG 246

Query: 254 KEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            E+ +    H       S+      +  + +  +      T+   G        L G++ 
Sbjct: 247 AELARSLAGHVPELWTYSLERDDVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYN 306

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             N L   G   A+G+  A  +  + +L  VPGR + V  ++       + VDYAHT ++
Sbjct: 307 AANLLAVIGGLRALGVPLADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDA 366

Query: 369 LEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           LE  L  +R + +   GR++ VFGCGG+RD  KRP+M  +A  LAD  I T DNPR E P
Sbjct: 367 LEKALGALRPLAAARGGRLLCVFGCGGNRDASKRPLMAAVAERLADRVIATSDNPRDEAP 426

Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             I  ++  G         IE  +R  AI  AI     +DVL++AGKGHE
Sbjct: 427 AAILVDVAAGFAAPAAVEMIE--DRRAAIARAIGSAEARDVLLIAGKGHE 474


>gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 492

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 149/487 (30%), Positives = 240/487 (49%), Gaps = 38/487 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +  P  + Q S+      + +I+++  DSR    G +FV IVG + D H F 
Sbjct: 1   MKLEQLL-EGVPFTLAQGSL------DTEISDIIYDSRKAAPGLLFVCIVGTQRDSHEFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
               A+G  A+V+       D   +      ++ V+++R  ++L ++ L+G       ++
Sbjct: 54  ADCAAKGVSALVIQ-----HDIDLSALPGVTVVKVESSRYAMALMSANLFGNPSRKMTMI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSY 176
            VTGT GK++    ++ + + +G     IG T+ I    +      TTP    L K    
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIG-TNGIYYMGRHKETANTTPESYELQKTFRE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
               G     +E SS GL   R+ G+    G FTNL  DHI    H+T + Y + K +LF
Sbjct: 168 FLDAGCDTALMEVSSQGLMMDRVAGVHYNVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---KVCAIHNKQQV 291
           +         ++  DD  + E +   H   C++++ G   +  + +   ++   H+   V
Sbjct: 228 KRC----DVGVVNIDDE-NTEALLEGHT--CKLITYGRAEQADYRETGFELLRTHDFLGV 280

Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              V GKD  D    +PGEF VYNAL A  +   +G+    + + L K  VV GR E V 
Sbjct: 281 KFHVTGKDEMDVKVNMPGEFSVYNALAALAVGKVLGLPDQAIHDGLGKC-VVKGRVELVP 339

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             S+   I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +A
Sbjct: 340 I-SKKFTILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMA 398

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D +I+T+DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V
Sbjct: 399 DFSILTEDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAV 458

Query: 465 AGKGHET 471
            GKGHET
Sbjct: 459 IGKGHET 465


>gi|227875251|ref|ZP_03993393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269978140|ref|ZP_06185090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|306818513|ref|ZP_07452236.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|227844156|gb|EEJ54323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269933649|gb|EEZ90233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|304648686|gb|EFM45988.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 516

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 222/466 (47%), Gaps = 48/466 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R ++ G +F+A+ G    G  F P AI++GA+A++  +A              P++ V
Sbjct: 46  DNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVLTDAA----GLDLVANPEVPVITV 101

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTS- 151
            +        A+  +G +P N L + G +G +   +    ++ +  R G  +  +G    
Sbjct: 102 PDVPHAAGRAAAMAWG-NPANHLRLWGVTGTNGKTTTTYLLRHLLHRVGKLAALVGTVEV 160

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            I   +  + +TTP    +    +   +  +  + +E SSH L   R+D ++     F N
Sbjct: 161 AIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHALGLGRVDPLRFRVAGFCN 220

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L  DH+D+H + + YF  K  LF E   +    +I  DD + + + ++    G       
Sbjct: 221 LTHDHLDFHHSMEDYFQTKASLFTER--RSDRQVIIVDDDWGRRLAEQLERMG------- 271

Query: 272 YQGKFIHLKKVCAIHNKQQVTIS-------------VEGKDFDFLFPLPGEFQVYNALVA 318
            Q  F+ L          Q +I+              +GK       +PG F   N  +A
Sbjct: 272 -QHDFVTLS-TTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPGRFNAVNTALA 329

Query: 319 -----AGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
                 GL ++  + +  +L HL    +   VPGR E +    R   + VD+AH   +L+
Sbjct: 330 IVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPR---VIVDFAHNPGALK 386

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L+ +R  T+GR+ +VFG  G RD  KRPI+G+IA +LAD   +TDD+P  EDP KIRA
Sbjct: 387 SLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIAGELADFTYLTDDDPHEEDPGKIRA 446

Query: 431 EIIHGI---PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           E+  G+   PG ++E   R  AI+ AI+    QD +V+AG+GHET+
Sbjct: 447 EVRAGLEDFPGKYVEIAGRSAAIKQAIQDAKPQDTVVIAGRGHETL 492


>gi|113869231|ref|YP_727720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
 gi|113528007|emb|CAJ94352.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
          Length = 520

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 161/494 (32%), Positives = 229/494 (46%), Gaps = 43/494 (8%)

Query: 32  EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++ D+R +  G +F A ++GN     DG L+I QAIA GA AIV    Y    F     
Sbjct: 31  QLTGDTRRLARGDVFFAYVLGNARLATDGRLYIAQAIAAGAGAIV----YEADGFDWPFS 86

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSS 144
              P L V +  +     A+  +G +P   LAVTG   T+GK+S + ++ ++ Q +G   
Sbjct: 87  DVVPHLAVSHLHQLAGPIAAGWHG-NPVRGLAVTGITGTNGKTSCSQWLARVLQAAGTPC 145

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   T      Q    TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G  
Sbjct: 146 ATIGTLGTGFPGALQATGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGLEQERVAGTH 205

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TNL +DH+DYH +   Y  AK  LF         A++  DDA  + ++     A
Sbjct: 206 FSVAVLTNLTQDHLDYHGSMAEYEAAKESLFR--WDGLRTAVVNRDDAMGQRLLAADAAA 263

Query: 264 GCRVLSVGY-------------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 + Y             +G+++    V A        I       +   P+ G F
Sbjct: 264 IGAPHVIEYGIDGPGAATVRRPRGEWLRATNVRATPTGTAFHIDGSFGSAEMATPMIGAF 323

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTS 366
            V N L   G  +A G+     +  L  L  V GR E  G  + GG       VDYAHT 
Sbjct: 324 NVSNLLAVLGAALANGVAWDAAIAALRALTPVEGRMELFG--AAGGPDAPLAVVDYAHTP 381

Query: 367 NSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++L   L  +R +    +GR+  VFGCGGDRD  KRP+MG +A   AD  I+T DNPRSE
Sbjct: 382 DALAQTLAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAEREADEVILTSDNPRSE 441

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I   I  G+     +  +IE    AI  A+      DV++VAGKGHE    +  G 
Sbjct: 442 DPQDILDAIADGM-AVRARARQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEI-QGR 499

Query: 480 KKMSVDCDIIREIL 493
           K+   D + +R  L
Sbjct: 500 KRPFSDREHVRLAL 513


>gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
 gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
          Length = 482

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 146/487 (29%), Positives = 231/487 (47%), Gaps = 56/487 (11%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAI 64
            P L    ++F  +  E  +  ++ DSR ++ G++FVA+ G         DGH F+P+A+
Sbjct: 1   MPTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTG 122
           A+GA A+V     +L           P L V + R+ L+L A R +G+    +L   VTG
Sbjct: 61  ARGAVAVVGERPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNR-----LTTPSPIYLAKALSY 176
           + GKS+ AS +  + +R+   S  +   ST+     ++ R      TTP    +   L  
Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALL---STVGLRLGEEARPPVGHFTTPEAPEVYAFLRE 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFE 235
            + +G+    +E SSH L   R++G+    G F N    DH+D+H T +AYF AK  L E
Sbjct: 169 AADRGLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVE 228

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   A++     +   + +R H      LS G  G+ ++ + +          +  
Sbjct: 229 ----RSDLAVLARSLPHFPRLAQRPH------LSFGEGGE-VYAEGLRETPEGLAFRLHT 277

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +   PL G + + NAL A+   +A+G+    VLE L     VPGR E V      
Sbjct: 278 PWGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVVLKAPF- 336

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            R+ +D+AHT  SLE  LK +R  T GR+++V G  G+RD  +R  +G++A  LAD    
Sbjct: 337 -RVVIDFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFF 395

Query: 416 TDDNPRSED--------PEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           T+++ R ED         +  RAE  +   +P      +R EAI  AI      D +++A
Sbjct: 396 TEEDHRGEDLFAILEAMAQAARAEGGVYELVP------DREEAILKAILEARPGDTVLLA 449

Query: 466 GKGHETV 472
           GKGHE  
Sbjct: 450 GKGHEAT 456


>gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardia farcinica IFM 10152]
 gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Nocardia farcinica IFM
           10152]
          Length = 536

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 233/465 (50%), Gaps = 35/465 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIR 87
           +  +   S  +Q G +F A+ G    G  F   A+A+GA A+   +  A  L   +    
Sbjct: 53  VTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDAVARGAVAVFTDAEGARVLDGLT---- 108

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P+LV +  R+ L   ++ +YG+  + +  + +TGTSGK++ +  V+     +GLS+ 
Sbjct: 109 --VPVLVRERPREVLGELSAAVYGQPSQRLRLIGITGTSGKTTTSYLVEAGLAAAGLSTA 166

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T I      + LTTP    L    + +  QGV  V +E SSH L   R+DG++ 
Sbjct: 167 LIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQAVVMEVSSHALALGRVDGVRF 226

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNA 263
             G+FTNL +DH+D+H   + YF AK RLFE   P  +  A++  DDA+ + + +    A
Sbjct: 227 DVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPVAARTAVVCVDDAWGRRLAE--GLA 284

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               +S   +  +     V  +  +Q+ T +    +      LPG + V NAL+A  +C 
Sbjct: 285 APITVSTTGEADWRVAGGVATVGAEQEFTAAGPAGELGVRLRLPGRYNVANALLAVAVCA 344

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITS 381
           A   D A+    L  +  VPGR + V    RG      VDYAH   +LE ++  +R   +
Sbjct: 345 AARADPAVAAPALATVD-VPGRMQRV---ERGQDFLAVVDYAHKPAALESVIATLREHLA 400

Query: 382 -------GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                  GR+ VV G GGDRD GKR +MG      AD+ ++TDDNPR+EDP  IRA +  
Sbjct: 401 AADPEHPGRLAVVVGAGGDRDAGKRALMGAAGARGADLLVITDDNPRTEDPATIRAALRA 460

Query: 435 G---IPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G   +P  +     E G+R  AI  A+    + D ++VAGKGHET
Sbjct: 461 GALEVPAEVRGEVREIGDRAAAIEAAVAWARRGDAVLVAGKGHET 505


>gi|325519768|gb|EGC99073.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. TJI49]
          Length = 513

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/415 (33%), Positives = 207/415 (49%), Gaps = 49/415 (11%)

Query: 105 FASRLYGKHPENILA--VTGTSGKSSVASFV-------QQICQ-----RSGLSSFQIGPT 150
            AS  YG   +++LA  VTGT+GK+S   ++        Q C       SG+   Q+ PT
Sbjct: 98  IASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVIGTLGSGMPG-QLVPT 156

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                       TTP    L ++L+ LS+ G   V++E SSH L Q R++G       FT
Sbjct: 157 G----------FTTPDAPQLQRSLAQLSAAGAKAVAMEVSSHALHQGRVNGTAFDIAVFT 206

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYH T  AY  AK +LF     +   A++  DDA  + ++++      RV ++
Sbjct: 207 NLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLAG---RVRTI 261

Query: 271 GY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            Y     Q      +++ A+  +   T     +     D D      G F V N L   G
Sbjct: 262 AYGIGDAQQAPDADRELVALDVRATATGTAFRLHSSWGDADVEVGTLGTFNVSNLLAVLG 321

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + +L  V GR + +G   +     + +DYAHT ++LE  L  +R 
Sbjct: 322 ALLAADVPFDAALAEVARLESVNGRMQRLGGRLQSDEPLVVIDYAHTPDALEKTLDALRP 381

Query: 379 ITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I +   GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +I+ G
Sbjct: 382 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQAIIDQIVAG 441

Query: 436 I--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +  P    +  +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 MTAPDRARRTEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 495


>gi|311895543|dbj|BAJ27951.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Kitasatospora setae
           KM-6054]
          Length = 514

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 158/489 (32%), Positives = 236/489 (48%), Gaps = 36/489 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+ DSR ++ G ++VA  G    G  F   A A GA A++  +A +    +A +  
Sbjct: 38  EVTGVTHDSRAVRPGDVYVAFPGANHHGAAFAAGAAAAGAVAVLTDAAGAELAAAAGV-- 95

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+LVVD+ R+ +   A+ +YG   E +L +  TGT+GK++ +  V+   + +G     
Sbjct: 96  --PLLVVDSPREAMGPLAAAVYGAPSERMLMIGLTGTNGKTTTSYLVEGGLRGAGRLPGV 153

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           IG   T+     + R+    TTP    L   L+ +   G   V +E SSH L   R DG+
Sbjct: 154 IG---TVEMRVGEERIKSERTTPEATELHAVLAVMREAGADAVVMEVSSHALVYGRTDGV 210

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 F NL  +H+D+H   + Y+ AK RLF++   K    +   DD+Y + +   A  
Sbjct: 211 VYDVALFNNLTPEHLDFHPDMEDYYRAKARLFQQG--KSRRGVANRDDSYGRRLAGEARI 268

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAA 319
                 + G        + V         T  V    G+  D   PLPG F V NAL A 
Sbjct: 269 PMTTFSAAGDPAA--DWRAVDVRPGPSGSTFRVLGPNGEQADAAVPLPGLFNVSNALGAI 326

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNI 376
              +  G++ A  +  +  +  VPGR E V      G+ Y   VDYAH  ++L  +L ++
Sbjct: 327 TALVVAGVELADAVAGVAAVPGVPGRLEEVDA----GQDYVAVVDYAHKPDALSSVLASL 382

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T GR+ VV GCGGDRD  KR  MG IA  LAD A++T DNPRSED   I A ++ G 
Sbjct: 383 REVTKGRLHVVVGCGGDRDPYKRGPMGAIAARLADTAVLTSDNPRSEDALAILATMLSGA 442

Query: 437 PGFIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
               E+         +R EAI  A+   +  D ++VAGKGHE    V  GE +   D  +
Sbjct: 443 AEVPEQERGEVLAVPDRGEAIALAVSRAHSGDTVLVAGKGHELGQYV-KGEVRPFDDRQV 501

Query: 489 IREILGLIL 497
           +R  +  I+
Sbjct: 502 LRTAIEQIM 510


>gi|320535821|ref|ZP_08035902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
 gi|320147369|gb|EFW38904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
          Length = 564

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 160/517 (30%), Positives = 244/517 (47%), Gaps = 72/517 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR +QAG +F A  G   DG  +I  AI  GA AIV  +   L  ++A +
Sbjct: 61  DTEVSSIEYDSRKVQAGAVFFAFPGLHTDGEQYIADAIHTGAIAIVHQN--ELPSYAAGV 118

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  +S F +  Y    ++  ++ VTGT GKSS  SF+ Q+ +   L+ 
Sbjct: 119 C----YVRVREVRAVMSAFVAYFYDFPSKDLVVIGVTGTEGKSSTVSFIAQLLR---LAH 171

Query: 145 FQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--Q 196
            + G  ST+S    D  +      TTP  + + + L+ +   G     VE+SSHGL    
Sbjct: 172 KRAGFFSTVSYSLGDEVIPNPEHQTTPESVTVQQRLAAMRDNGCEFAVVESSSHGLSPLT 231

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----------LPKESPAI 245
            RL+ +   AG F N+ ++H+++H T + Y   K  LF +L           +P  S  +
Sbjct: 232 ARLNDVCFDAGIFMNVTQEHLEFHGTFEQYRFDKANLFRKLDEHAHIKAGRSVP--SFGV 289

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------ 299
           + ADD  S E    A    C   SV         KK   + N+ Q  I+V  K+      
Sbjct: 290 VNADDP-SAEYFYAATKQPCYSFSVNTA------KKTAFLKNELQGVIAVNIKEDSNGIQ 342

Query: 300 FDFL-----------FPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRF 346
           FD              PL G F V N L A+ L ++  +   L  ++  L+KL  + GR 
Sbjct: 343 FDIFESGKSESIHARAPLAGLFNVQN-LCASLLTVSSILQKPLAELIPLLQKLEPITGRM 401

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMG 403
             +    +   + +DYAHT +S +M++  I+   +   G++IVVFG GG+RD  KRP  G
Sbjct: 402 CKI-QEGQPFEVLIDYAHTPSSFQMLMPPIKDRIAKQGGKLIVVFGSGGERDTKKRPEQG 460

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEML 456
           +IA    D+ I+ D++PR EDP  +   I  G P        FI   +R  AIR A  + 
Sbjct: 461 RIAAAYCDVIILADEDPRGEDPVALLEMIAAGAPHKKLDSELFIIP-DRKAAIRKAFSLA 519

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           N  D +++ GKGHE   I  NG    S + +I R +L
Sbjct: 520 NPHDAVLLLGKGHENTIIYKNGAIPYSEE-EIARTLL 555


>gi|107021633|ref|YP_619960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688578|ref|YP_834201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891822|gb|ABF74987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646667|gb|ABK07308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
          Length = 515

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 149/483 (30%), Positives = 234/483 (48%), Gaps = 42/483 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   F+  A+A+GA A++          +A       
Sbjct: 30  QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVAL 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            +   +  +     AS  YG   +++LAV  TGT+GK+S   ++      + L++    P
Sbjct: 90  AVPALD--QLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIA-----TALTALHQ-P 141

Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + I +              TTP    L ++L+ L   G   V++E SSH L Q R++G 
Sbjct: 142 CAVIGTLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGT 201

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL +DH+DYH T  AY  AK +LF     +   A+I  DDA  + ++++   
Sbjct: 202 AFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVINRDDAAGRRLLEKLAG 259

Query: 263 AGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              RV ++ Y           + +    V A        +     D +      G F V 
Sbjct: 260 ---RVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVS 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371
           N L   G  +A  +     L  +E+L  V GR + +G   +     + +DYAHT ++LE 
Sbjct: 317 NLLAVLGALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 376

Query: 372 ILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L  +R I +   GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I
Sbjct: 377 TLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHI 436

Query: 429 RAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             +++ G+    ++  RIE    AI  A+    ++DV+V+AGKGHE    +  G+K+   
Sbjct: 437 IDQVVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFS 494

Query: 485 DCD 487
           D D
Sbjct: 495 DQD 497


>gi|297170221|gb|ADI21259.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 464

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 224/453 (49%), Gaps = 30/453 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V ++S++++   +F+++ G    G  ++    A  A+ I++ S       S TI     I
Sbjct: 14  VVTNSKYLKKNDVFLSLKG----GAKYLTSDQANLAKHILLDS-------SETIDLPKVI 62

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + D    +L          H   + L +TGT+GK+S  SF+ QI + + +       + 
Sbjct: 63  KIKDLNSTYLEWIDEYFDIDHSYFDNLFITGTNGKTSTLSFLSQIFKSNDIKH---ASSG 119

Query: 152 TISSFAQD-----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           T+ +F  D     N LTT  P+++   +S      + ++  EASS G+D++RL G+K+  
Sbjct: 120 TLGTFINDKKIFNNELTTEEPVFIRNLMSKCFRLSIKNIIFEASSIGVDKNRLRGLKIDH 179

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTN+ RDH+DYH + + Y +AK +L      K + A+ + D+  S+ + K        
Sbjct: 180 AIFTNISRDHLDYHGSLKKYIDAKFKLISNSKAK-TVAVNFDDEIISRHLRKMYSKETFT 238

Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + S   +   F  + K     N + +  +  GK F     +  +F +YN  ++      +
Sbjct: 239 ISSKNIESDIFFRVLKFYEDGNIEFLAETPWGK-FQAASKIESKFNLYNLFLSLPYFQYV 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
             D       +E L +  GR       +    IY+DYAH+  +LE + K +      ++I
Sbjct: 298 NNDCEDFFAQVENLSLPYGRL----NKTEKENIYIDYAHSPKALESVCKYLYKKKKNKLI 353

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442
           +VFG GG+RD+GKR  MG+IA    +   VT DNPR+EDP +I   II GI G  +   +
Sbjct: 354 IVFGAGGERDEGKRYQMGEIADKYCEKIYVTSDNPRNEDPRQIADMIIDGIKGTDKICIE 413

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +R  AI+ AI  L ++D+L++AGKGHE   IV
Sbjct: 414 LDRSCAIKNAINELGEEDILLIAGKGHEKKQIV 446


>gi|325109906|ref|YP_004270974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
 gi|324970174|gb|ADY60952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
          Length = 504

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 234/476 (49%), Gaps = 31/476 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++ SR      +FVA+ G+  +   ++ QA AQGA  I+    + L D +      TP
Sbjct: 33  DIATHSRSCNRQTLFVALSGSHREEGAYLRQAAAQGAAGILTD--FPLSDLA------TP 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +V N R+   L    L G+  E +    VTGT+GK++V   ++ I + +  +   +G 
Sbjct: 85  QCIVPNVRRTYGLLCQSLAGRPAEQLRTFGVTGTNGKTTVTWMLRSIVKAANENCGLLGT 144

Query: 150 T--STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S      +   LTTP     A+ +  +   G T  ++E SSH +DQ RL G+ L  G
Sbjct: 145 IEYSDGCHTPEPATLTTPDAAVTAQWMRRMVQAGATAAAIEVSSHAIDQDRLSGVSLAGG 204

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+DYH +   Y   K R+   LL  ++P ++  DD   + ++          
Sbjct: 205 IITNITHDHLDYHGSLSKYAEVKARI-ANLLQDDAPLVVNGDDCNIRNLLPHLPP---ET 260

Query: 268 LSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           ++VG+  +    I +++        +++   EG       P+PG   VYNA  AA L  A
Sbjct: 261 ITVGFDKRNSYRIEIQEQTLQGTAFRLSPGTEGAVLR--CPVPGRHNVYNAAFAAVLAQA 318

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G     +   L  L   PGR + V T  +    +VDYAHT +++   L+++R++T GR+
Sbjct: 319 AGYSLESISAGLASLVPPPGRLQPVET-CQPFSCFVDYAHTPDAIAQTLQSLRSVTKGRL 377

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFI 440
           I +FG GG+RD+ KRP M + A + ADI ++T DN R E   +I  EI  G     P   
Sbjct: 378 ICLFGAGGERDREKRPRMARAA-EQADIVVLTADNSRREPTAQILEEIQAGFSDAAPEVF 436

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
              +R +AI+ A+++    D +++ GKGHE    +  G+++   D D + E+   I
Sbjct: 437 VNADRSQAIQLAVKLAEPGDCVLILGKGHEKTQEIA-GQRR---DFDDVAEVCASI 488


>gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
 gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
          Length = 482

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 231/487 (47%), Gaps = 56/487 (11%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAI 64
            P L    ++F  +  E  +  ++ DSR ++ G++FVA+ G         DGH F+P+A+
Sbjct: 1   MPTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTG 122
           A+GA A+V     +L           P L V + R+ L+L A R +G+    +L   VTG
Sbjct: 61  ARGAVAVVGEKPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNR-----LTTPSPIYLAKALSY 176
           + GKS+ AS +  + +R+   S  +   ST+     ++ R      TTP    +   L  
Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALL---STVGLRLGEEARPPVGHFTTPEAPEVYAFLRE 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFE 235
            + +G+    +E SSH L   R++G+    G F N    DH+D+H T +AYF AK  L E
Sbjct: 169 AADRGLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVE 228

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   A++     +   + ++ H      LS G  G+ ++ + +          +  
Sbjct: 229 ----RSDLAVLARSLPHFPRLAQKPH------LSFGEGGE-VYAEGLRETPEGLAFRLHT 277

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +   PL G + + NAL A+   +A+G+    VLE L     VPGR E V      
Sbjct: 278 PWGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVVLKAPF- 336

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            R+ +D+AHT  SLE  LK +R  T GR+++V G  G+RD  +R  +G++A  LAD    
Sbjct: 337 -RVVIDFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFF 395

Query: 416 TDDNPRSED--------PEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           T+++ R ED         +  RAE  +   +P      +R EAI  AI      D +++A
Sbjct: 396 TEEDHRGEDLFAILEAMAQAARAEGGVYELVP------DREEAILKAILEARPGDTVLLA 449

Query: 466 GKGHETV 472
           GKGHE  
Sbjct: 450 GKGHEAT 456


>gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038281|gb|EEG48527.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
          Length = 485

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 223/459 (48%), Gaps = 37/459 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ +V  DSR +Q G +F+ I G   DGH F+P  + +GA  +VV       +       
Sbjct: 22  EVTDVVYDSRKVQKGSLFLCIRGAVVDGHTFVPDVVKKGAGVLVVEEKVEAPE------- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
           +  +++V +TR  ++  ++  +G HP   L   G +G     +    V+ I + +G   +
Sbjct: 75  HVTVILVKDTRYAMACISAAYFG-HPARRLKTIGVTGTKGKTTTTYMVKSILENAG---Y 130

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI +   D  +    TTP    + K    ++  G   V +E SS  L  HR  G
Sbjct: 131 RVGLIGTIEAIVGDKVIPAVNTTPESYVIQKYFKEMADAGCDCVVMEVSSQALMLHRTAG 190

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            +   G FTN+  DHI  + H+  Q Y   K  L  +        I+  DD + ++++K 
Sbjct: 191 FEFDFGIFTNIEPDHIGPNEHRDFQHYLECKSMLLRQC----KVGIVNRDDKHFEQIIK- 245

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNA 315
            H   C + + G+  K  +  +    +  K  + I  + +   +F     +PG+F +YN+
Sbjct: 246 GHT--CALETFGFSEKADLRAEDAKLVSGKGWLGIDYQVRGMMNFQVEIDIPGKFSIYNS 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +C    +    ++  L ++  V GR E +  +     + +DYAH + +LE +L  
Sbjct: 304 LTAIAICRHFKVSEKDIVNAL-RVAKVKGRIEMIKVSDEF-TLMIDYAHNAMALESLLTT 361

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R     R++ +FGCGG+R + +R  MG+ +  LAD+ I+T DNPR E P+ I  +I  G
Sbjct: 362 LREYHPHRLVCLFGCGGNRSKLRRYEMGETSGRLADLTIITSDNPRYEKPQAIIDDIKVG 421

Query: 436 IP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I      +IE  +R EAI  AI      D++++AGKGHE
Sbjct: 422 ISKTDGKYIEIADRKEAIAYAIHHGEPGDIIILAGKGHE 460


>gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
 gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
          Length = 496

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 221/474 (46%), Gaps = 51/474 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ ++++++DSR  + G IFVA  G   D H F    I QG   +VV+    L       
Sbjct: 20  DKNVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCSIVVVNRELELD------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140
                 +VV +T +  SL A  L+    H      VTGT+GK+S+A+ +  I ++     
Sbjct: 74  -GEVTQVVVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLD 195
              G + FQI  T T  +       TTP  + L K +            +++E SSHGL 
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDADAEAEAMTMEVSSHGLS 186

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAY 252
             RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +
Sbjct: 187 LGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDF 246

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----- 307
           S  +   A      V + G   +   + K         +  S++G +FDF  P       
Sbjct: 247 SHYL---ASVTPYEVFTYGIDNEAQFMAK--------NIDESLQGVEFDFSTPFGDYRVK 295

Query: 308 ----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G F + N + A     + G     ++  +  L  V GR E +   S    + +DYA
Sbjct: 296 SPYVGRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPVEGRLEVLDP-SLPIDLIIDYA 354

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT++ +  ++  ++     ++I + G  G+RD  K P MG +A   AD  I T DNP ++
Sbjct: 355 HTADGMNKLIDAVKPFVKQKLIFLVGMAGERDMTKTPEMGSVAC-RADYVIFTPDNPAND 413

Query: 424 DPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DP+ + AE+  G     ++E  +R E I+ AI++    D +V+A KG E   I+
Sbjct: 414 DPKMLTAELAKGATHDNYVEFDDRAEGIKHAIDVAEPGDTVVLASKGREPYQIM 467


>gi|313673688|ref|YP_004051799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940444|gb|ADR19636.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 484

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/413 (32%), Positives = 207/413 (50%), Gaps = 39/413 (9%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P ++V+N R+   +     +      I  + +TGT+GK++    +  I + SG  + +IG
Sbjct: 77  PHILVENARRTFGMICRNFFNIDFSKIKSIGITGTNGKTTTNYLIDSILRVSGYKTIRIG 136

Query: 149 PTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            T  +        +N  TTP    + + ++    +G + V +E SSH LDQ R+ G+   
Sbjct: 137 TTEYVIVDEKIEANN--TTPGIYDIFEMVAKGVKKGASAVCMEVSSHALDQDRVYGLNFD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK------EVMKR 259
              FTNL  DH+DYH+T + Y+ +K +LF +   K   A I  D  Y K      E+ K 
Sbjct: 195 VAVFTNLTGDHLDYHKTMEHYYQSKKKLFTKEYSKN--AAINIDYDYGKRLYNEVEIAKY 252

Query: 260 AHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + + G     V+ V Y    I+    C ++   +V IS+          L G   + N L
Sbjct: 253 SFSKGKGDVGVVDVSYSLDGIN----CRVNIGDEV-ISLNSH-------LVGRHNLENIL 300

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A      +GI    ++  +E+   VPGR E    N  G   +VDYAHT ++L+ +L+ +
Sbjct: 301 GAVTATYILGISKDDIIRGVEQFKNVPGRLEKFEKN--GAYFFVDYAHTDDALKNVLEAL 358

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +    GR+I VFGCGGDRD+ KRP M K+A   +DI IVT DNPR+EDP  I  EI+ G 
Sbjct: 359 KGFKKGRLITVFGCGGDRDRTKRPRMAKVAEVYSDIVIVTSDNPRTEDPNAIIDEILTGF 418

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                  ++   RI AI+ A +     D++++AGKGHE   I+  G+ K   D
Sbjct: 419 ENRSKVLVDPDRRI-AIKKACDEAKAGDIVLIAGKGHEDYQII--GKTKYHFD 468


>gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces avermitilis MA-4680]
 gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Streptomyces avermitilis
           MA-4680]
          Length = 506

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 152/482 (31%), Positives = 241/482 (50%), Gaps = 45/482 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL  Q+     + R+ ++  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A++
Sbjct: 19  ELAGQMGAATPE-RDAEVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAVAVL 77

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130
                +  D +A   +  P+LVVD+ R  +   A+ +YG    ++L   +TGTSGK++ A
Sbjct: 78  TDPTGA--DRAAA--TGLPVLVVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTTTA 133

Query: 131 SFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185
             ++      GL + +  G   T+     D R+    TTP    L    + +  +GV  V
Sbjct: 134 YLIE-----GGLRTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAV 188

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-A 244
           ++E SSH L   R+DG       F NL  +H+++H   + YF AK +LF    P+ S   
Sbjct: 189 AMEVSSHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFRAKAQLF---TPQRSKLG 245

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFL 303
           ++  DD Y + +++    AG  +++   +G      +   +       T +V G   + +
Sbjct: 246 VVNFDDEYGRRLVE---EAGVPIVTFSAEGHPDADWRAQDVEVGPMDSTFTVIGPKEERI 302

Query: 304 F---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY- 359
               PL G F V N L A     A G+D     + +  +  VPGR E V      G+ Y 
Sbjct: 303 TARSPLAGPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDV----GQPYL 358

Query: 360 --VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH ++++E +L+ +R +T G++ +V GCGGDRD+ KR  MG  A  LAD A++T 
Sbjct: 359 AVVDYAHKTDAVESVLRALRKVTEGKLHIVLGCGGDRDRTKRMPMGAAAARLADTAVLTS 418

Query: 418 DNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKG 468
           DNPRSEDP  I A ++ G   +P   E+G      NR  AI   +      D ++VAGKG
Sbjct: 419 DNPRSEDPLAILATMLAGAAEVPSH-ERGEVQVFENRAAAIAAVVARARPGDTVLVAGKG 477

Query: 469 HE 470
           HE
Sbjct: 478 HE 479


>gi|288871613|ref|ZP_06118234.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
 gi|288862802|gb|EFC95100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
          Length = 493

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 151/479 (31%), Positives = 228/479 (47%), Gaps = 34/479 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ +V  DSR  +   +FV   G K D H FIP  +  G +A+VV     + D    IR 
Sbjct: 26  EVEDVIYDSRKARENVVFVCTKGTKIDSHEFIPDVVKAGVKALVVERQAEIPDGVTAIR- 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 V ++R+ L+L ++  +G+  E ++   VTGT GK++    ++ I +  G     
Sbjct: 85  ------VHSSREALALLSAARFGRPQEKMITIGVTGTKGKTTTTHMIKAILESCGKKVGM 138

Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG T   I S       TTP    L ++   +   G  ++ +E SS     HR+DGI+  
Sbjct: 139 IGTTGIVIGSEVTPTMNTTPESYQLFESFERMVQAGCEYMVMEVSSQAFKMHRVDGIRFD 198

Query: 206 AGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            G FTN+  DHI  D H     Y   K     +LL +    I+  DD + +E++K   + 
Sbjct: 199 YGLFTNISPDHIGPDEHADFAEYLYYK----SQLLSRCRIGIVNRDDEHYREIIK---DT 251

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISVEGK-DFDFLFPLPGEFQVYNALV 317
            C + S   + +   +     IH   +     +   V G+   +    +PG+F VYNAL 
Sbjct: 252 ACELASYSLEQEADFMAG--QIHYVSEPEFVGLEFDVTGRYKLEARVNIPGKFNVYNALA 309

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +C  + +    V   LE L V  GR E V  +S+   + VDYAH + S+E +LK +R
Sbjct: 310 AISVCSFLDLPKEKVRHALEHLSV-NGRMEIV-YSSKKCTVIVDYAHNAVSMESLLKTLR 367

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                R++ VFGCGG+R + +R  MG  A  LAD  I+T DN R E    I A+I   I 
Sbjct: 368 EYHPKRLVCVFGCGGNRSKDRRYSMGDSAGRLADFTILTADNSRFEKTGDIIADIRSSIE 427

Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                FIE  +R EAI  ++      D++ V GKGHE    V NG +    D +++ EI
Sbjct: 428 KTGGEFIEIPDRREAIAYSMIHARPGDMIAVIGKGHEDYQEV-NGVRHHFSDREVVLEI 485


>gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 494

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 216/462 (46%), Gaps = 49/462 (10%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR      IFVA  G   D H F    I QG + IVV+           ++     ++V 
Sbjct: 30  SRTASGESIFVASKGYTVDSHRFCQNVIDQGTKIIVVNR-------KQEVKGEVTQVIVP 82

Query: 97  NTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ-------RSGLSSFQI 147
           +T +  S+ A  L+    + +    VTGT+GK+S+A+ +  I +         G + FQI
Sbjct: 83  DTLRVASILAHTLFDYPSQQLTTFGVTGTNGKTSIATMIHLIYRGLDKNSAYLGTNGFQI 142

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  +       TTP  + L K +          +++E SSHGL   RL G++    
Sbjct: 143 NEEKTKGAN------TTPETVLLTKKIKQAVDSKAEAMTMEVSSHGLALGRLRGVEFDVA 196

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAG 264
            F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +SK  ++      
Sbjct: 197 VFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSK-YLETVTPYE 255

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVYNA 315
                +  + +F+           Q +  S++G  FDF  P           G+F + N 
Sbjct: 256 ILTYGIDNEAQFM----------AQNIKESLQGAQFDFATPFGTYHVSSPYVGKFNISNL 305

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A     + GID   ++E ++ L  V GR E +   S    + +DYAHT++ +  ++  
Sbjct: 306 MAAMIAVWSKGIDFKDIVEVVKSLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMNKLIDA 364

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++     ++I + G  G+RD  K P MG +A   AD  I T DNP  +DP+ + AE+  G
Sbjct: 365 VQPFVKQKLIFLVGMAGERDLTKTPEMGAVAC-RADYVIFTPDNPADDDPKMLTAELAKG 423

Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                +IE  +R E I+ AIE+ N  D +V+A KG E   I+
Sbjct: 424 ATHNNYIEFEDRAEGIKHAIEVANPGDTVVLASKGREPYQIM 465


>gi|148273045|ref|YP_001222606.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830975|emb|CAN01920.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 514

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 206/422 (48%), Gaps = 33/422 (7%)

Query: 88  SNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S  P+++  + R  L   A+ ++   ++P  +  VTGT+GK+SV   +  + ++ G+ + 
Sbjct: 93  SGLPVILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVT- 151

Query: 146 QIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             G TST    I   +  +RLTTP    L   L+ +    V  V++E S+  L +HR+DG
Sbjct: 152 --GLTSTAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDG 209

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +     +F NL  DH+D +   + YF+AK   F+    +    ++  D  + + ++    
Sbjct: 210 LVFDIAAFINLSHDHLDDYADFEEYFDAKAAFFDPDRARR--GVVSLDTEWGQRIVD--- 264

Query: 262 NAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLF---PLPGEFQVYNA 315
             G R+   ++  +        V  +      T   +EG D   L    P+PG F   NA
Sbjct: 265 --GSRIPMTTIASKPGVDADWTVTVLEQTPDSTGFRLEGPDNRVLVSRVPVPGWFMAANA 322

Query: 316 LVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +A  + +  G D   V   L++       +PGR E V +   G   +VDY HT ++ E 
Sbjct: 323 GLAIVMLVESGYDLDAVAHVLDRDGGIQAYIPGRAERV-SGETGPLFFVDYGHTPDAFEQ 381

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R  T G++++VFG  GDRD  KR  MG IA  LAD+ ++TD +PR EDP  IRA 
Sbjct: 382 TLQALRPFTPGKLVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRAS 441

Query: 432 IIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +I G    +      E  +   AIRTA+ ++ + D ++VAG GHE  H V   +   S  
Sbjct: 442 LIAGAMAAVPDREIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVAGRKIPFSAR 501

Query: 486 CD 487
            D
Sbjct: 502 DD 503


>gi|210617216|ref|ZP_03291460.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
 gi|210149417|gb|EEA80426.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
          Length = 493

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 233/460 (50%), Gaps = 39/460 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I E+++DSR + AG +FV I G   DGH F+ + + +GA+A++V       +    I+ 
Sbjct: 23  EITELTNDSRRVCAGSVFVCISGAVVDGHEFVKEVLEKGAKAVIVEKEVKAPEHVTVIK- 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
                 V++TR  L+L ++  +G +P   L V G +G     +    V+ I +  G    
Sbjct: 82  ------VEDTRYALALASAAYFG-YPAEQLKVIGITGTKGKTTTTYMVKSILEGVG---H 131

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++G   TI +   D  +    TTP    + +    +   G   V +E SS GL  HR  G
Sbjct: 132 KVGLIGTIEAIIGDEVIPAKNTTPESFTIHQYFRKMVDAGCDAVVMEVSSQGLMLHRTAG 191

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           I    G FTNLG DHI  + H+  + Y   K  LF++        I   DD Y ++V + 
Sbjct: 192 IPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFKQC----RIGIANVDDPYFEDVFR- 246

Query: 260 AHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYN 314
              A C++ + G+  K   L+    K+ +      V+  V G  DFD    +PG F VYN
Sbjct: 247 --GATCQIETFGFAQK-ADLRAADTKLVSRPGYLGVSYHVSGLMDFDVEIDIPGTFSVYN 303

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A  +C    +   ++ + L+   V  GR E V   S    + +DYAH + SLE +L 
Sbjct: 304 SLTAIAVCRHFDVPVEMIKKALKVAKVK-GRIEMVKV-SEDFTLMIDYAHNAMSLESLLT 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNPR E+P+ I  +I  
Sbjct: 362 TLKEYHPKRLVCLFGCGGNRAKARRYEMGEVSGKLADLTIITSDNPRFEEPQDIIDDIKI 421

Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           GI      ++E  +R EAIR A++     DV+V+AGKGHE
Sbjct: 422 GIGKTDGKYVEICDRKEAIRYAVDHAEVGDVIVLAGKGHE 461


>gi|313680446|ref|YP_004058185.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
 gi|313153161|gb|ADR37012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
          Length = 477

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 144/486 (29%), Positives = 233/486 (47%), Gaps = 46/486 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+ DSR ++ G+++VA+ G + DGH F+  A+A+GA A+  + A S          
Sbjct: 18  EVRGVTHDSRRVEPGFVYVALPGRRFDGHAFVADAVARGAVAVAGARALS---------P 68

Query: 89  NTPILVVDNT--RKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFV-QQICQRSGLSS 144
             P L +  T  R  L+  A+  +G+  E + +A    +   +  +F+   +   SG  +
Sbjct: 69  GVPYLRLPETELRPALARLAAEFHGRPSEKLWVAGVTGTDGKTTTTFLLHHLLASSGRRT 128

Query: 145 FQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             IG     +       +   TTP    +   L+ +   G+TH  +EASSH L QHRLD 
Sbjct: 129 GMIGTVGYDAGAGLAFPEGHFTTPEAPEVQGLLARMVEGGLTHAVLEASSHALAQHRLDA 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      +T+L  +H+D+H   + YF AK  L E    +   A++     Y+  ++ R H
Sbjct: 189 VDFDLAVWTHLSPEHLDFHGDMEGYFRAKALLVE----RARLAVLNTACPYAMRLVHRPH 244

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALV 317
                 LS G  G+F    ++  +H +         S EG+ F+   P+ G +   NAL 
Sbjct: 245 ------LSYGPGGEF----ELLEVHEEAAGLAFAFASPEGR-FETRLPMLGRYNAENALA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A       G+        L +   VPGR + V T     R+ VD+AHT   L   L  +R
Sbjct: 294 ALAAAYTAGVSPERAAAELPRFAGVPGRMQIVRTEPF--RVVVDFAHTPKGLAATLSALR 351

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
             T GR++VV G  G+RD GKR  +G+ A++LAD+A+ T+++ RSE  E+I AE+  G  
Sbjct: 352 PTTEGRLVVVVGSAGERDPGKRAPLGRTAVELADLAVFTEEDSRSEPVEEILAELARGAE 411

Query: 437 -------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                    ++ + +R  AI  A E+    D +V+AGKGHE   +    E     +  + 
Sbjct: 412 EASGREGKDYLLEPDRGRAIALAFELARPDDTVVLAGKGHERT-LERENETLPWNEAALA 470

Query: 490 REILGL 495
           R++LGL
Sbjct: 471 RKLLGL 476


>gi|172058185|ref|YP_001814645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990706|gb|ACB61628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 489

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 216/448 (48%), Gaps = 22/448 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++DSR +  G +++ + G   DGH +  +A+A GA AI+                 
Sbjct: 25  ITGIATDSREVTKGCLYICVRGYTVDGHQYAEEAVANGAVAILAEEPID--------GVE 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++++ +T+      A   Y  HP + L V G +G +   +  +        +  + G 
Sbjct: 77  VPVVLLQDTKHAAGKVADLFY-DHPSHKLKVYGITGTNGKTTTTKLTYDLFRAAGQKAGM 135

Query: 150 TSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            STI +       D   TTP  I L + L  +  QGVT   +E SSH L + R++G+K  
Sbjct: 136 ISTIGAMIDGEMIDTPNTTPEAIILHRLLYQMVEQGVTDCVLEVSSHALMEGRVEGVKFH 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A +FTNL  DH+DYH + + Y  AK  +F+++      A+I  +      VM++A     
Sbjct: 196 AAAFTNLTHDHLDYHASMEEYAQAKALVFKQVATSGGQAVILNEADPKSRVMEKAAEG-- 253

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V  + Y  K +    +     ++ V++ ++G   +    L G+F   N   A GL  A 
Sbjct: 254 -VPVIWYATKALSEAPITVEWKEETVSVRIDGTVTEVPVFLLGDFNAANLAAAIGLMQAG 312

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            ++   ++ H+ +L +  GR E +     G  +Y+DYAHT + LE  LK + ++    + 
Sbjct: 313 NVNMYQLIRHIPELRLPKGRLEQI--PFEGCEVYIDYAHTPDGLEKCLKAL-SVPGEPLY 369

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
           +V    G+RD+ KR +MG+IA    +  IVT  +PR E P++I  E++  IP        
Sbjct: 370 MVLSAAGERDRSKRAVMGRIAGQYCEGIIVTVHDPRREQPQQIIKELLVEIPPRKIITCH 429

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +R EA++ A ++      +V+ GKGHE
Sbjct: 430 ESRKEALQIAAKVALTGKRMVIVGKGHE 457


>gi|15827429|ref|NP_301692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae TN]
 gi|221229906|ref|YP_002503322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae Br4923]
 gi|6093448|sp|O69557|MURE_MYCLE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3080478|emb|CAA18673.1| udp-n-acetylmuramoylalanyl-d-glutamate --2,6-diaminopimelate ligase
           [Mycobacterium leprae]
 gi|13092979|emb|CAC31290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae]
 gi|219933013|emb|CAR71004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 530

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 147/480 (30%), Positives = 224/480 (46%), Gaps = 26/480 (5%)

Query: 11  FPELINQ----LSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            PEL+ Q    L+  P Q     +  +  V+  ++ + +G +F A+ G    G  +   A
Sbjct: 21  LPELVAQVGAVLADGPGQAATVPDIPVTGVTLRAQEVLSGDLFAALAGASTHGARYAGVA 80

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A++   A  + + +A   S+ PIL+    R  L   A+  YG HP N + V G 
Sbjct: 81  LERGAVAVLTDVA-GVAELTAQA-SSVPILIHPEPRSVLGGLAAAAYG-HPSNRMTVVGI 137

Query: 124 SGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSS 179
           +G S   +  ++ +   R+G     +  T  I     D  + LTTP    L   L+ +  
Sbjct: 138 TGTSGKTTTTYMVEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMVE 197

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--EL 237
           +GV  V +E SSH L   R++G +     FTNL RDH+D+H   + YF AK  LF+   L
Sbjct: 198 RGVETVVMEVSSHALSLGRVEGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHSL 257

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L   +  +   DDA      +         L      +   ++    +  ++   +   G
Sbjct: 258 LRARTVVVCIDDDAGRATAARAGDAITVSALGQPASWRATDIRS-PGVGAQEFTAVDPAG 316

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG + V N LVA  +   +G+           + + PGR E +    +   
Sbjct: 317 VQHRVGIRLPGRYNVANCLVALAILDVVGVSPEQASLGFRDIRI-PGRLERIDCG-QDFL 374

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   +L  +L  +      R+ VVFG GG+RD GKR  MG+IA +LAD+ +VTD
Sbjct: 375 ALVDYAHKPGALHSVLTALLQ-PDHRLAVVFGAGGERDPGKRAPMGEIAAELADLVVVTD 433

Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR EDP  IR +I+ G          +E G+R  AI+ A+      DV++VAGKGHET
Sbjct: 434 DNPRGEDPAAIRRDILTGTVAAGGAAQVVEIGDRRAAIQYAVAWAGPDDVVLVAGKGHET 493


>gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
          Length = 489

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 218/462 (47%), Gaps = 32/462 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN+V  DSR   +  +FVA  G   D H FIP  + QG   IVV       D        
Sbjct: 23  INKVVVDSRAADSESVFVASHGYTVDSHKFIPNVVRQGCRMIVVDHYIEGLDIGQ----- 77

Query: 90  TPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              +VV +T +   +F   +  +  H      VTGT+GK+SVA+ +  + +   ++S  +
Sbjct: 78  ---VVVRDTLQAARIFTQHVMDFPSHKLTTYGVTGTNGKTSVATMIHHLHRALNINSAYL 134

Query: 148 GPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           G     + F  +  +     +TP  I L + +++   QG   +++E SSHGL   R DG+
Sbjct: 135 G----TNGFQYNEEVAKGANSTPETITLNQHIAHAVEQGAQSMAMEMSSHGLALGRTDGV 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKR 259
            +    FTNL +DH+D+H T + Y   K  LF +L     ++  A++  DD YSKE++  
Sbjct: 191 DIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQLGNDFKQQKYAVVNGDDDYSKELIIA 250

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALV 317
           +      V++ G + +   +K      +   +  ++E  D   +   P  G F +YN L 
Sbjct: 251 SPR---EVITYGIE-QNTDIKATNIKESIHGIAFTLETPDGNVEITCPYIGRFNIYNMLA 306

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A       G   + + E  + L  V GR E +  N     + +DYAHT + +  ++  + 
Sbjct: 307 ALTALWTQGHALSALAEAAQSLPPVEGRLEVLDRNLPIDLV-IDYAHTPDGMNKLIDALE 365

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++I + G  G+RD  K P MG +A   AD  I T DNP ++DP K+   +  G  
Sbjct: 366 PFKRGKMIFLIGMAGERDLSKTPEMGAVAC-RADYVIFTPDNPANDDPRKLTDALESGAT 424

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
              ++   +R E IR AI M    D++V+A KG E   I+ N
Sbjct: 425 HTNYVSFLDRAEGIRHAIAMSEPGDMVVLASKGREPYQIMEN 466


>gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 492

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 235/486 (48%), Gaps = 19/486 (3%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+NQL     Q  E +I  ++ DSR  +   +F  + G + DGH F+  AI  GA A+V 
Sbjct: 2   LLNQLF---KQAPEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVH 58

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S    L  +   I       VVD       LF +     +   +  VTGT+GK S+A  +
Sbjct: 59  SE--ELVHYEEGILYFRVNDVVDTLNVIADLFYAE--ASYHLQMFGVTGTNGKESIAKII 114

Query: 134 QQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           Q++      +   IG  S T  +      LTTP+ I L   L  +   G+   ++E SS 
Sbjct: 115 QEVLNPDKATG-NIGSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSSV 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G++Q R+  +      FTNL  +H+D+H T Q YF AK + F++L  K + AI   DD Y
Sbjct: 174 GVEQKRVQSVHFDYAIFTNLDHNHLDFHGTMQNYFEAKKKFFDDLDEK-ACAITNIDDPY 232

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               +K   ++  RV++ G   + ++ +++     +     + V  +++D    L   F 
Sbjct: 233 G---LKMVEDSEARVVTYGMSEEAMYSIRQYRLKKDGTSFCLKVYDQEYDIETNLVSRFN 289

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N   A       G+   L+ E ++ L  + G  + +    +   + VD AHT + L  
Sbjct: 290 LMNLTAAIVALHESGVKMELIQERVKFLTQMEGHMQMI-QEGQNFNVLVDIAHTVDGLSR 348

Query: 372 ILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +L+   +IT  + RIIVV G  G RD+ KR  +G +     D+ I+T+++PR+E P +I 
Sbjct: 349 VLEYATSITPKNCRIIVVNGSVGKRDKIKRQKVGNLMDQYCDMIILTEEDPRNESPREIA 408

Query: 430 AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            EI  GI    ++   +R +AIR A+E+ + +D ++V GKG++       G      D  
Sbjct: 409 EEIAKGIDKTPYLIISDRYDAIRQALELADPEDTVLVLGKGNQKFMERDIGRCSYQGDVI 468

Query: 488 IIREIL 493
           I++E+L
Sbjct: 469 IVKEVL 474


>gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
 gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
          Length = 484

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 149/487 (30%), Positives = 231/487 (47%), Gaps = 42/487 (8%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+N+++   +Q    ++++++  DSR +Q   +FV I G   DGH FI Q I +GA 
Sbjct: 3   LKQLLNEMNYQVLQGDLNQEVSQIDYDSRTVQDRSLFVCIPGANVDGHDFIDQVINRGAR 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IVV      Q+    IR       V   R  L+L +   + +HP   + V G +G    
Sbjct: 63  VIVVEHDVPFQEGITYIR-------VKEARLALALLSCAFF-EHPSRQMTVIGITGTKGK 114

Query: 130 ---ASFVQQICQRSGLSSFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGV 182
              +  ++ I +++   + ++G   TI S      Q  + TTP    L + +  +   G 
Sbjct: 115 TTTSYMMESILEKA---NKKVGIIGTIGSIVNGEFQKTKNTTPESFELQRLMRQMVECGC 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ--QAYFNAKMRLFEELLPK 240
            +  +E SS GL  +R+ GI    G FTNL  DHI  H+    + Y   K  LF+     
Sbjct: 172 EYCVMEVSSQGLMLNRVAGIDFDYGVFTNLSPDHIGEHEHHSFEHYMACKKMLFQMC--- 228

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295
               I   DD + ++++K A     +  S+  Q       K   IH  Q      V+   
Sbjct: 229 -KVGIFNRDDEHYEDMIKGA-KCDIKTYSLHQQSDL----KASQIHLSQGTGTLGVSFQT 282

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G  D +F   +PG F VYN+LVA  LC  +GI++  + E L+K+ V  GR E V    +
Sbjct: 283 SGLIDANFETDIPGHFSVYNSLVAIILCHLLGIETNYIKEALKKVRV-RGRVEIVPVGQK 341

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAH + S E IL+ I      RI+ V+G GG RD  +R  +G+I       +I
Sbjct: 342 Y-TVMIDYAHNALSFESILQTIMDYQPHRILCVYGAGGHRDVKRRYDVGEIVAKYKAFSI 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T DNPR E+  +I  +I+ GI      ++   +R EAI  A+E     DV++  GKGHE
Sbjct: 401 LTADNPRGENVSQICEDIVTGIHRVGGDYVIIEDRKEAIHYALEHAEANDVILCLGKGHE 460

Query: 471 TVHIVTN 477
              I+ N
Sbjct: 461 DYQILQN 467


>gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
 gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
          Length = 521

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 140/497 (28%), Positives = 231/497 (46%), Gaps = 47/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR ++ GW+FVAI G   DGH ++  A+    +A  V+    ++ ++       P+
Sbjct: 28  LAYDSRQVRPGWLFVAIRGFHVDGHQYVDHAL----KAGAVAVVVDVRHWNGPTTLGVPL 83

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSS----- 144
           + V ++R  L+  A+  Y  HP   L   G   T GKS+    V Q+ +  GL +     
Sbjct: 84  ITVADSRVALAPLAANFYA-HPAAHLRTIGITGTKGKSTTTDLVSQVLEGGGLRTGMIST 142

Query: 145 --FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLD 200
             F+IG       +    R +TP    +   L  +   G ++  +E++SH L  +  RL 
Sbjct: 143 VDFKIG----ARRWPNTTRQSTPEAPEIQGLLHEMLDAGCSYAVLESTSHALSPYWNRLG 198

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MK 258
            +      F N+  +H+DYH + + Y   K RLF  L   +S A  +  D   + V  + 
Sbjct: 199 NVYFDVAVFLNVTHEHLDYHGSFEQYRADKARLFAMLGEGQSEASCHQGDRVERPVWAIA 258

Query: 259 RAHNAGC-----------RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A +  C           R L+ G +    +    V +  +   + ++    +      +
Sbjct: 259 NADDPNCQFFLDAAPSYARRLTFGVRAAADVRAHAVASGPSGSHLRVTTPWGEAALHLQI 318

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V NAL A  + ++ G+     +  LE +  + GR + +    +   + VDYAH  
Sbjct: 319 PGSFNVSNALAALSVALSQGVPLERAITALEAVPGIRGRMQPIHLG-QPFDVIVDYAHNP 377

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +S E +L  +R +T GR+I VFG  G+RD+ KR + G+IA   AD+ ++TD++PR EDP 
Sbjct: 378 DSFEQVLSMLRPLTKGRMIAVFGSAGERDRAKRSVQGEIAGRYADLLVLTDEDPRGEDPA 437

Query: 427 KIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            I AEI+ G          G+    NR EAI  AI      D++++ GKGHE   I  +G
Sbjct: 438 AIIAEIVEGAERAGKRVGDGYRCIPNRSEAIHVAIAAAQPGDLVLLLGKGHEGSIIYASG 497

Query: 479 E---KKMSVDCDIIREI 492
                +  V C  +R +
Sbjct: 498 AIPWDEADVACQALRSL 514


>gi|289762319|ref|ZP_06521697.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
 gi|289709825|gb|EFD73841.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
          Length = 390

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTP    L   L+ +  +GV  V +E SSH L   R+DG +   G+FTNL RDH+D+H 
Sbjct: 49  LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHP 108

Query: 222 TQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +   YF AK  LF+ +   +   A++  DD   + +  RA +A    ++V    +  H +
Sbjct: 109 SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWR 164

Query: 281 KV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                      +Q   I   G        LPG + V N LVA  +   +G+     +  L
Sbjct: 165 ATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 224

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            ++ V PGR E +    +G    VDYAH   +L  +L  +      R+ VVFG GGDRD 
Sbjct: 225 REIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 281

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG---FIEKGNRIEAIR 450
           GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G   + G    +E  +R +AIR
Sbjct: 282 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 341

Query: 451 TAIEMLNKQDVLVVAGKGHET 471
            A+      DV+++AGKGHET
Sbjct: 342 HAVAWARPGDVVLIAGKGHET 362


>gi|218753881|ref|ZP_03532677.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis GM 1503]
          Length = 394

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTP    L   L+ +  +GV  V +E SSH L   R+DG +   G+FTNL RDH+D+H 
Sbjct: 53  LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHP 112

Query: 222 TQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +   YF AK  LF+ +   +   A++  DD   + +  RA +A    ++V    +  H +
Sbjct: 113 SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWR 168

Query: 281 KV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                      +Q   I   G        LPG + V N LVA  +   +G+     +  L
Sbjct: 169 ATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 228

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            ++ V PGR E +    +G    VDYAH   +L  +L  +      R+ VVFG GGDRD 
Sbjct: 229 REIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 285

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG---FIEKGNRIEAIR 450
           GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G   + G    +E  +R +AIR
Sbjct: 286 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 345

Query: 451 TAIEMLNKQDVLVVAGKGHET 471
            A+      DV+++AGKGHET
Sbjct: 346 HAVAWARPGDVVLIAGKGHET 366


>gi|215431088|ref|ZP_03429007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis EAS054]
          Length = 379

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTP    L   L+ +  +GV  V +E SSH L   R+DG +   G+FTNL RDH+D+H 
Sbjct: 38  LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHP 97

Query: 222 TQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +   YF AK  LF+ +   +   A++  DD   + +  RA +A    ++V    +  H +
Sbjct: 98  SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWR 153

Query: 281 KV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                      +Q   I   G        LPG + V N LVA  +   +G+     +  L
Sbjct: 154 ATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 213

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            ++ V PGR E +    +G    VDYAH   +L  +L  +      R+ VVFG GGDRD 
Sbjct: 214 REIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 270

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG---FIEKGNRIEAIR 450
           GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G   + G    +E  +R +AIR
Sbjct: 271 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 330

Query: 451 TAIEMLNKQDVLVVAGKGHET 471
            A+      DV+++AGKGHET
Sbjct: 331 HAVAWARPGDVVLIAGKGHET 351


>gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 485

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 220/453 (48%), Gaps = 33/453 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR + +G +F+ I G   DGH F   A+A GA A++  S Y L         +
Sbjct: 22  VTGVETDSRKVSSGNVFICIRGYTVDGHKFAEDAVANGASAVI--SEYPLD-------LD 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P +VV +T++     AS  Y  HP +   I  VTGT+GK++ A+    + + SG  +  
Sbjct: 73  VPNVVVADTKQTAGEVASVFY-DHPSHRMRIYGVTGTNGKTTTATLTYDLLRLSGRRA-- 129

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  STI +   +  +    TTP  + L + L+ +   GVT   +E SSH L + R+ GI
Sbjct: 130 -GIVSTIGARFHNQTIETANTTPEAVVLHRILAEMVDAGVTDCVLEVSSHALMEGRVAGI 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A +FTNL  DH+DYH++   Y  AK RLFE++      AI+   +  +  VM  A  
Sbjct: 189 HFHAAAFTNLTHDHLDYHRSMDEYARAKARLFEQVEVTNGEAIVLNAEDSASHVM--AEF 246

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAG 320
           A  R  ++ Y         V  I   +  T+ V  K+F    P+   G F   N   A G
Sbjct: 247 APTR-RAIMYSTTVDVEADVQVIWRDE--TVLVRMKEFKLEVPVRFMGAFNAANLAAAIG 303

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L     +    ++ ++  L +  GR E + T      IY+DYAHT + LE  L  ++   
Sbjct: 304 LVSTSDMALRTIVSNVPGLTLPKGRLERLATED--AEIYIDYAHTPDGLEKCLSTLQQDD 361

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
              ++VV    GDRD  KR  MG+IA   ++  IVT  + R EDP++I  +++ GI    
Sbjct: 362 RA-LVVVLSAAGDRDPTKRQDMGRIASRYSNEVIVTVHDVRMEDPKQIIRDLVKGIQPDV 420

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            ++    R EA+R A     +   +VV GKGH+
Sbjct: 421 KYVTFEAREEALRHAATQALEGKRVVVVGKGHD 453


>gi|262202914|ref|YP_003274122.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
 gi|262086261|gb|ACY22229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
          Length = 556

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 220/435 (50%), Gaps = 36/435 (8%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LV    R  L   ++R+YG   +   ++ +TGTSGK++ +  V+     +G S   IG  
Sbjct: 119 LVHPEPRTVLGGVSARIYGNPSQRLKLIGITGTSGKTTTSYMVEAALLAAGSSVGLIGTV 178

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            T I   AQ + LTTP    L   L+ +  +GV  V +E SSH L   R+DG     G+F
Sbjct: 179 ETRIDGVAQPSSLTTPEAPTLQALLAVMLERGVDAVVMEVSSHALALGRVDGSHFALGAF 238

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAG---- 264
           TNL +DH+D+H T  AYF AK +LF    P  +  ++I  DD +   + + A  A     
Sbjct: 239 TNLSQDHLDFHPTMAAYFEAKAQLFVPSSPVHAVRSVICVDDEWGARMAELARPAARQSA 298

Query: 265 ---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G   ++   + V       +  I+    D + + PLPG + V NAL+A  +
Sbjct: 299 RQPVTVSTGGVPAQWHAAESVVDADGTSRTPITGTDGDAELVVPLPGRYNVANALLAVAV 358

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMIL-----K 374
               G+D+A  +  +  +  VPGR + V    RG      VDYAH   +++ +L     +
Sbjct: 359 ADCAGVDAATAIGAIATVS-VPGRLQRV---DRGQPFLALVDYAHKPGAVQAVLATLRAQ 414

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                 +GR+ +V G GGDRD  KRP+MG+ A   A+  +VTDDNPR+EDP  IRAE++ 
Sbjct: 415 AAARAEAGRVAIVIGAGGDRDTAKRPLMGEAAARGAEFVVVTDDNPRTEDPAAIRAEVLA 474

Query: 435 GI--------PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           G         P   E+    G R EAI TA+      D +++AGKGHET   + NG K  
Sbjct: 475 GARAVGRADRPAGAEEVREVGGRAEAIATALHWARPGDTVLIAGKGHETGQEI-NGVKHP 533

Query: 483 SVDCDIIREIL-GLI 496
             D D++ ++L GL+
Sbjct: 534 FDDRDVVAQVLDGLV 548


>gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
 gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
          Length = 486

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 219/460 (47%), Gaps = 45/460 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +  ++ DSR ++ G++FVA+ G         DGH FIP+A+ +GA A+V       QD +
Sbjct: 19  VRGLTQDSRRVEPGFVFVAVPGVPLPHRRPLDGHAFIPEALRRGAIAVVGE-----QDLT 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRS 140
             +    P   V ++R+ L+L A R YG+ P+  L    VTG+ GKS+ A  +  + + +
Sbjct: 74  LPV----PYARVADSRQALALLARRFYGE-PDRALRLFGVTGSKGKSTTAFLLHHLLEEA 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            L S  +G      +       TTP    +   L   + +G+    +E SSH L   R++
Sbjct: 129 ALLS-TVGLRLGGEARPPIGHFTTPEAPEVYAFLREAADRGLREAVLEVSSHALALKRVE 187

Query: 201 GIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           G+    G F N    DH+D+H T +AYFNAK  L E    +   A++     + + + +R
Sbjct: 188 GLTFRVGVFVNFYPDDHLDFHGTPEAYFNAKTLLVE----RSDLAVLNTSLTHLERLRQR 243

Query: 260 AH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            H     G  V + G + +              + T+       +   PL G   V NAL
Sbjct: 244 PHLLFGPGGEVWAEGVREE-----------EGLRFTLHTPWGKGEVHLPLIGAHNVENAL 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A+   +A G+    VLE L     VPGR E V    +  R+ +D+AHT  SLE  L+ +
Sbjct: 293 AASAAALAAGVPLEKVLERLSGFPGVPGRMEVV--QEKPFRVVIDFAHTGKSLEAALRTL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI----RAEI 432
           R  T GR+++V G  G+RD  +R  +G++A  LAD A  T+++ R+ED   I        
Sbjct: 351 RPTTQGRLLLVVGAAGERDPRRREDIGRVAARLADKAFFTEEDHRTEDLGAILEAMARAA 410

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
                 F    +R EAI  AI    + D +++AGKGHE  
Sbjct: 411 AAEGGRFELVPDREEAILKAILEAQEGDTVLLAGKGHEAT 450


>gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
 gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
          Length = 498

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/469 (30%), Positives = 230/469 (49%), Gaps = 31/469 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N +S DSR I  G +FVAI G   DGH FI + I QGA A+V++S Y  ++++     N
Sbjct: 23  VNSISQDSRKIGKGDVFVAIKGYTVDGHNFIEKVIEQGA-ALVIASRY--ENYNV---EN 76

Query: 90  TPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             +LVV      K  S+ A ++      + +AVTGT+GK+S+++ V  + +  G SS  I
Sbjct: 77  CAVLVVREHEIEKIASMIAKKINEGADIHTVAVTGTNGKTSISTLVHNMLRNLGESSAYI 136

Query: 148 GPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           G     + F +++        TTP  + L   +  L  + + +++ EASSH +   R+  
Sbjct: 137 GT----NGFGKNDDEPIYFGNTTPDVVTLHNQIGELRHENIKNLAFEASSHAMALGRIYN 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAY----SK 254
           + +    FTNL  +H+D+H   Q Y   K  LF  L   L +    ++  DD+Y    SK
Sbjct: 193 VDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKFGVLNKDDSYYKIISK 252

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            + ++  N   +  +  +    I   K   I+       S EG  F+      G+F V N
Sbjct: 253 CLYQQEINYSIKDETADFYAYNIKQFKEDKIYKTSFTLKSPEGT-FECTTNYIGDFMVSN 311

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G     ++  L KL  + GR E +G +     I  D+AHT +  E +L+
Sbjct: 312 VLAALSAVWVKGYSVEQLVNILPKLGALYGRMEILG-DDLPIDIISDFAHTPDGYEKLLE 370

Query: 375 NIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             R I  G R ++V G GG RD  K P++G+I +  AD  ++T D+PR ED E +   I 
Sbjct: 371 ATREIRKGKRTLLVTGMGGGRDISKGPLIGEI-ISEADYVVITTDSPRDEDVEVLMGSIE 429

Query: 434 HGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
            G+    + +   R +A++  IE+    DV+++A KG E   I+  G+K
Sbjct: 430 KGMTHKNYEKVWFRTDAVKRIIELSKPGDVVILASKGREDYEILQGGKK 478


>gi|289754268|ref|ZP_06513646.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289694855|gb|EFD62284.1| predicted protein [Mycobacterium tuberculosis EAS054]
          Length = 373

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTP    L   L+ +  +GV  V +E SSH L   R+DG +   G+FTNL RDH+D+H 
Sbjct: 32  LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHP 91

Query: 222 TQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +   YF AK  LF+ +   +   A++  DD   + +  RA +A    ++V    +  H +
Sbjct: 92  SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWR 147

Query: 281 KV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                      +Q   I   G        LPG + V N LVA  +   +G+     +  L
Sbjct: 148 ATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 207

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            ++ V PGR E +    +G    VDYAH   +L  +L  +      R+ VVFG GGDRD 
Sbjct: 208 REIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 264

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG---FIEKGNRIEAIR 450
           GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G   + G    +E  +R +AIR
Sbjct: 265 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 324

Query: 451 TAIEMLNKQDVLVVAGKGHET 471
            A+      DV+++AGKGHET
Sbjct: 325 HAVAWARPGDVVLIAGKGHET 345


>gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
          Length = 489

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/480 (29%), Positives = 233/480 (48%), Gaps = 39/480 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+N      +  ++  I  +  DSR ++ G +FV +VG   + H FI Q I +GA AIV
Sbjct: 5   KLLNGFEYEIIGNKDVDITTLVYDSRKVEEGSLFVCMVGAAFNAHDFIDQVIEKGAHAIV 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSV 129
           +S   SL++    IR       V +TR  L+L  S  Y  +P     ++ +TGT GK+S 
Sbjct: 65  ISQDVSLKEGMTYIR-------VKDTRIALALL-SCAYFNYPSKELKVVGITGTKGKTSS 116

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  ++ I + +G     IG   T I    +    TTP    L + +  +      +  +E
Sbjct: 117 SLMIKSILEHAGKKVGIIGTNGTFIGDIHEPTANTTPESYELQRIMRKMVEHDCEYCVME 176

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAII 246
            SS  L  +R+ GI+   G FTN+  DHI  + H+    Y   K  LF+         + 
Sbjct: 177 VSSQALKMNRVAGIEFDYGVFTNISPDHIGPNEHKDFAEYMACKKHLFDFC----QVGLF 232

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQ-QVTISVEGKDF- 300
             DD + +E  K   +  C+VL+   +     K +H++    ++N+  ++ I+ + K   
Sbjct: 233 NKDDEHFEEFTK---DVPCKVLTYSIEKDSDLKALHIE----LYNENGELGITFDTKGLI 285

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F   +PG+F  YNALVA  +C  I + +  +   L ++HV+ GR + +   S    +
Sbjct: 286 NASFKASMPGKFNAYNALVAIMICYLIDVPTKDIQNTLPQVHVL-GRGQVMHV-SPDYSV 343

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAH   S E I+  +      ++IVV+G GG R + +R   G++       +I+T D
Sbjct: 344 LIDYAHNGVSFESIISTVEQYNPNKLIVVYGSGGKRSKTRRYESGEVVAKHGGYSILTAD 403

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           NPR E    I  +I+ GI  +  +     +R EAI  A++M  K DV+++ GKGHET  I
Sbjct: 404 NPRGEKIVDICKDIVVGIDKYHGEYTIIPDRKEAIYHALDMACKGDVVLLLGKGHETYMI 463


>gi|319948585|ref|ZP_08022712.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
 gi|319437751|gb|EFV92744.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
          Length = 521

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 141/470 (30%), Positives = 219/470 (46%), Gaps = 48/470 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +++ DSR +  G  ++A+ G+   G  F  +A   GA   +   A      SAT+   
Sbjct: 36  VVDITDDSRSVSTGHAYLALPGSHHHGLDFEGRAAEAGAAVAISDRA------SATL--- 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P LVV + R      ++  +G  P N   +  VTGT+GK+S A  ++     +G SS  
Sbjct: 87  -PTLVVGDPRAVSGPLSAWFHGC-PSNAMRVFGVTGTNGKTSTAHLLEAGLAAAGESSGL 144

Query: 147 IGPTSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           I   + I     D R   TTP    L + L  +   G T  ++E SSH +DQ R+DG++ 
Sbjct: 145 IS-GAAIRGAGLDLRPVRTTPEAPMLQRTLGRMVRGGATACAMEVSSHAIDQGRVDGVRF 203

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +FTNLG DH+DYH T + ++  K  LF     +   A++  DD + + +   +    
Sbjct: 204 RTVAFTNLGHDHLDYHHTMEEHYRVKASLFTAA--RADTAVVSVDDHHGRRLAAESEPPT 261

Query: 265 --CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             C V  VG     ++ + V       + T             + G  QV NALVA    
Sbjct: 262 WTCSVRDVGAD---VYAEDVVCDGTGSRFTARTPYGAVPVRLRVLGPHQVPNALVALTCL 318

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A GID     E L +L  VPGR E V    +     VDY H       +L ++R++ +G
Sbjct: 319 LADGIDPLAAAEGLSRLSRVPGRCEPVNAG-QSFTALVDYMHNEPGQRALLPHLRSMATG 377

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-------- 434
           R+I+V G  G RD+ KR  +G+ A   AD+ IVTD++P  EDP  +RA+++         
Sbjct: 378 RLILVIGATGGRDRTKRRPLGRTAASFADLVIVTDESPEDEDPAAVRADVLAGAREAAGA 437

Query: 435 --------------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                         G+   +E+ +R  A+  A+ +    DV+VVAG+G E
Sbjct: 438 RAGGAAGVRARETAGVE-VVEEPDRGRALALAVAVAGPGDVVVVAGRGSE 486


>gi|158334577|ref|YP_001515749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
 gi|158304818|gb|ABW26435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
          Length = 499

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 145/479 (30%), Positives = 231/479 (48%), Gaps = 42/479 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  ++++S  +Q G++F+ + G + DG  F   AI  GA A +VS      D     
Sbjct: 29  DAEITGLTTNSWAVQPGYLFIGMPGTRVDGGSFWKSAIEAGAAAALVSDQVDRADVGTHC 88

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                +L + +  +  +  A+  Y + P   L + G +G +   +    I     L++ Q
Sbjct: 89  -----VLALKDMPRACAEVAATFYDQ-PSQKLKLVGMTGTNGKTTTTHLI--EYLLTTAQ 140

Query: 147 IGPTS---TISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             PT+   T+ +    +++T    TP  + L + LS   +       +E SSH L Q R+
Sbjct: 141 -APTALFGTLYARWPGHQVTAAHTTPFAVDLQQQLSDAVAAQCQFGVMEVSSHALAQKRV 199

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVM 257
            G +     F+NL +DH+DYHQ  + YF AK  LF    P   +  AII  DD Y + ++
Sbjct: 200 LGCQFTVAVFSNLTQDHLDYHQDMEDYFAAKALLFS---PDYLQGRAIINIDDVYGQRLV 256

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQ 311
            +     C   S+                     T  V+G+        +F   L G+F 
Sbjct: 257 DQIGPNQCWTYSIEGPADLY-------TSGLSYETAGVKGQLHTPKGTVEFFSSLVGQFN 309

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLE 370
           V N L A G  + +G+    +   L +   VPGR + +  ++ +   + VDYAHT +SLE
Sbjct: 310 VSNLLAAVGAVLELGLTLEQITPALAQFPGVPGRMQQITYSADQDISVIVDYAHTPDSLE 369

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK  R    G++  VFGCGGDRD+ KRP+MG+IA  L+D AIVT DNPR+EDP++I  
Sbjct: 370 NLLKAARPFVKGQMACVFGCGGDRDRTKRPLMGEIAARLSDQAIVTSDNPRTEDPQQILQ 429

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +++ GIP      +E   R+       +     D +++AGKGHE   I+  G +K+  D
Sbjct: 430 DVLAGIPMEVKPIVEVDRRVAIQAAIAQA-KPGDTILIAGKGHEDYQIL--GTEKIHFD 485


>gi|269956079|ref|YP_003325868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304760|gb|ACZ30310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 532

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 163/488 (33%), Positives = 244/488 (50%), Gaps = 48/488 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFS 83
           R++ +  V+SD+R + AG +FVA+ G +  G  F   A+A+GA A++     A  L D +
Sbjct: 35  RDQAVTSVASDNRVVAAGDLFVALPGARAHGAQFAADAVARGAAAVLTDDDGAALLGDLA 94

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                  P+LV    R  L   A+ +YG   E++   AVTGT+GK++    +  + +  G
Sbjct: 95  ------VPVLVSPEPRAILGHVAAWVYGSPAEHLTTFAVTGTNGKTTTTYQLDHLLRALG 148

Query: 142 LSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +S  IG   T+   A D    ++LTTP    L   L+ +   GV  +++E SSH L  H
Sbjct: 149 FTSGLIG---TVEMRAGDRVLPSKLTTPEAADLQALLAAMHEDGVRTLAMEVSSHALALH 205

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+DG++     FTNL +DH+D+H   Q+YF AK  LF     +    ++  DDA+   + 
Sbjct: 206 RVDGVRYGVAGFTNLSQDHLDFHGDMQSYFEAKALLFTPEHARRG--VVVVDDAWGLRMA 263

Query: 258 KRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYN 314
           + A    A  R +  G    +  +  V         T++  +G+       LPG F V N
Sbjct: 264 EAAQVPVATLRTVPDGPAADWT-VSDVEPHGTGTAFTVTHKDGRTLRTSTTLPGHFNVAN 322

Query: 315 ALVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFV--GTNSRGG--RIYVDYAHTS 366
           A +A  + +  G     V E L        VVPGR E +  GT ++    R+ VD+AH +
Sbjct: 323 AALALVMVLEGGAHLTDVAEALAASGGLAGVVPGRMEVIAAGTGAQAALPRVVVDFAHNT 382

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +LE+ L  +R  T GR++VVFG  GDRD GKRP MG  A++ AD+ +VTDD+P  EDP 
Sbjct: 383 EALELALAALRPTTPGRLVVVFGATGDRDTGKRPAMGAAAVEGADVVVVTDDDPHGEDPA 442

Query: 427 KIRAEIIHGIPGFI-----------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +RAE++ G                      E   R  AIRTAI      D +++AG+GH
Sbjct: 443 AVRAEVLAGARAAAAAAAGTGTADARTVDVREVAPRDLAIRTAIAEAGAGDTVLIAGRGH 502

Query: 470 ETVHIVTN 477
           ET+  V  
Sbjct: 503 ETIQEVAG 510


>gi|239813921|ref|YP_002942831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Variovorax paradoxus S110]
 gi|239800498|gb|ACS17565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           S110]
          Length = 520

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 224/501 (44%), Gaps = 77/501 (15%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----------QGAEAIVVSS 75
           +ER    + +DSR + AG  F+A  G   DG   +  A+A          QGAEA     
Sbjct: 15  KERVQGALHADSRPVGAGDGFIAWPGAATDGRRHVASALAQGAAACLVEQQGAEAFGFDG 74

Query: 76  AYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
              +  +     +  PI     DN    L              +LAVTGT+GK+S A ++
Sbjct: 75  DERIASYPGLKAATGPIASAFYDNPSAAL-------------EVLAVTGTNGKTSTAWWL 121

Query: 134 QQ----ICQRSGLSSFQI---------GPTSTISSFAQD-------NRLTTPSPIYLAKA 173
            +    +    G+ + ++          P + + +             LTTP P+ + + 
Sbjct: 122 AESLSTLAVPGGVRAPRLDGSAERGVPSPCAVMGTLGIGVPPELVYTGLTTPDPVMMQRE 181

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  L  +G    ++EASS G+ + RLD  ++    FTN  +DH+DYH +  AY+ AK  L
Sbjct: 182 LRALVERGFGACAIEASSIGIAERRLDSARIAVAVFTNFTQDHLDYHGSMDAYWQAKAEL 241

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           F    P    A+I  DD +   +      AG     V +V   G    L      ++ Q 
Sbjct: 242 FR--WPGLRAAVINIDDVHGASLCANLLEAGIGALDVWTVSAAGAPARLMARDVGYDAQG 299

Query: 291 VTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +  SV   D D +      L G++ V N L   G   A+G+  A  +    +L  VPGR 
Sbjct: 300 LRFSVAEHDNDAVERMSTGLIGQYNVANLLGVLGTLRALGLSLAQAVAACSRLTSVPGRM 359

Query: 347 EFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRP 400
           E VG    N+      VDYAHT ++L+  L  +R +     G +  VFGCGGDRD  KRP
Sbjct: 360 ERVGAADANAAAPLAVVDYAHTPDALDKALAGLRPLAQQRGGALWCVFGCGGDRDPIKRP 419

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT--------- 451
           +M  +A   AD  +VT DNPRSE+P+ I ++++ G+        R EA +          
Sbjct: 420 MMAAVAERQADRVVVTSDNPRSENPDAIISQVLLGL-------ARPEAAQVQPDRAAAIA 472

Query: 452 -AIEMLNKQDVLVVAGKGHET 471
            AI     QDV+++AGKGHE 
Sbjct: 473 DAIAQAAPQDVVLLAGKGHEA 493


>gi|164686386|ref|ZP_02210416.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
 gi|164601988|gb|EDQ95453.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
          Length = 502

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 230/468 (49%), Gaps = 44/468 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +++  S   Q G++FVA+ G   DGH ++  A ++GA   V+     + D +  I  
Sbjct: 26  EIVDIAYSSLKCQEGYMFVALKGETVDGHKYVFDAYSRGARVFVLQDDIEMADDAIKI-- 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                +V+++R  LS  ++  +G   ++  I+ VTGT GK+++ +++ ++  R+G+++  
Sbjct: 84  -----IVEDSRIALSKISANYFGNPSKSLKIIGVTGTKGKTTITNYISEVLNRAGINTGV 138

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   T  ++ ++    TTP    L +    +   GV  VS+E SS GL +HR++ +   
Sbjct: 139 VGTNGTFYNNISETTVNTTPESYELHRIFRKMLDSGVECVSMEVSSGGLQRHRVEHVDFD 198

Query: 206 AGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--- 260
              FTNL  DHI    H T Q Y   K +LF   L K    II  DD +++E++  A   
Sbjct: 199 VAIFTNLSPDHIGPKEHPTFQNYLECKAKLF--TLAKH--GIINIDDEHAQEIIDIATCD 254

Query: 261 -------HNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                    A  R  ++ Y      + +K VC   N             ++    PG F 
Sbjct: 255 IETFGIKKQADIRATNIEYSKNLDSLGVKFVCETKNTAG----------NYYICSPGMFS 304

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +YNAL    +C  +G+   +  E L +  V  GR E +        I +DYAH   SLE 
Sbjct: 305 IYNALAVIAVCKYLGVKKEITREALTEAKVC-GRVEVLSVLPYA-TIIIDYAHNGVSLEN 362

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           ILK +      R+I +FG  G R + +R  +G +A    D++I+T DNP  EDP +I  +
Sbjct: 363 ILKTLEHYDHKRLICLFGSVGGRTKIRRKELGDVASRECDLSILTSDNPDFEDPLEIIDD 422

Query: 432 IIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I          +I + +R +A++ A+ M  + D++V+AGKGHET  ++
Sbjct: 423 IAKSFDKAKSKYIVEPDRKKAVQLAVRMAREGDMIVLAGKGHETYQLI 470


>gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
          Length = 552

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 231/471 (49%), Gaps = 44/471 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR ++ G ++ A+ G +  G  F  QA + GA AI+   A +       + + 
Sbjct: 39  LSGITHDSRAVRPGDVYAALPGARVHGADFSAQAASLGAAAILTDPAGA----GPALATG 94

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQ-----RSGL 142
            P+LVV + R  +   A+ LYG    ++L   +TGTSGK++ A  ++   +     R+  
Sbjct: 95  LPVLVVGDPRGRMGEVAATLYGHPGRDLLQIGITGTSGKTTTAYLIEGGLRAAQEARAKE 154

Query: 143 SSFQIGPTSTISSFAQ---DNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +  +I PT  I +      D R+    TTP    L    + +  +GV  +++E SSH L 
Sbjct: 155 TGEEIPPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVRALAMEVSSHALV 214

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+D        F NL  +H+++H   + YF AK +LF +   K    ++  DD Y + 
Sbjct: 215 LGRVDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQLFTKARSKL--GVVNHDDEYGRR 272

Query: 256 VMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           ++  +      V+S   +G     +     +    +     +  EG+      PL G F 
Sbjct: 273 LLTESE---VPVISFSAEGHPDADWRAEDVIVGSLDSTFTAVGPEGQRISARSPLAGPFN 329

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNS 368
           V N L A     A G+D     + +  +  VPGR E V      G+ Y   VDYAH +++
Sbjct: 330 VANTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDA 385

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +E +L+ +R +T GR+ +V GCGGDRD  KR  MG  A  LAD+A++T DNPRSEDP  I
Sbjct: 386 VESVLRALRKVTEGRLYIVLGCGGDRDTTKRGPMGAAAARLADLAVLTSDNPRSEDPLAI 445

Query: 429 RAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            + ++ G   +P   E+G      +R  AI  A+      D ++VAGKGHE
Sbjct: 446 LSTMLAGAAEVP-IHERGDVIIDADRAGAIAEAVVRAEAGDTVLVAGKGHE 495


>gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 488

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 210/453 (46%), Gaps = 27/453 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR      +F  + G   DGH F  QA+  GA A+V S    + +    IR  
Sbjct: 15  IDHLVLDSRDRVKNGMFFCLKGLTVDGHQFAKQAVENGAVAVVHSDDIDVIEGIVYIR-- 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                VD+    L       Y     N  +  +TGT+GKS+    V+ I +R G+++  I
Sbjct: 73  -----VDDVMTELHRVTDVFYNSPSTNMYVYGITGTNGKSTTMLTVRNILRRFGVNAGYI 127

Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   TIS    +++    LTTP  + L   L  +  +GV  V +E SS GL   R++ I 
Sbjct: 128 G---TISVEYNEHKFAPSLTTPDIVELQSYLQDMRLEGVEEVCLEVSSQGLALRRVESID 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               SFTNL  DH+DYH+T + YF AK  LF+ L P     ++  D+ Y  E+++    +
Sbjct: 185 FDNASFTNLTHDHLDYHKTMENYFEAKKMLFDNLKPS-GFMVLNIDNEYG-EILQNQDYS 242

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                 V         K +    +  + T+  EGK +  +      F VYN L    +  
Sbjct: 243 NVVTYGVDNPKAHYRAKDIVLHEDFTEFTLIHEGKTYPVVTNFVAIFNVYNMLNVIAILH 302

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
             G     ++  L+ +  V GR   V    +  R+ VD+ H  +S++ + + +R+     
Sbjct: 303 QRGYALEKIIPELKDIEHVDGRQTMV-NKGQPFRVIVDFGHAPDSMKNVYEFVRSTQDEG 361

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
            R+I VFG  G RD  KRPIMG++A    D  I+T+ + R E    I  +II GI     
Sbjct: 362 ARLITVFGAAGGRDTAKRPIMGRVASMYCDHVIITEHDNRDERVVDITQDIITGIESNNY 421

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            F+   NR +AI  A++M    D +V+ GKG E
Sbjct: 422 EFVP--NRTDAIEKALKMALPGDTVVLIGKGEE 452


>gi|240254313|ref|NP_176555.4| MURE; ATP binding / acid-amino acid ligase/ ligase [Arabidopsis
           thaliana]
 gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein
           [Arabidopsis thaliana]
          Length = 772

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 248/507 (48%), Gaps = 46/507 (9%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      + +I  +  DSR + AG +FV  +G++     F+ +A  +GA 
Sbjct: 245 ELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGSEN----FLSEADKRGAV 300

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V S    ++D +   R+   +++V++T   L+  AS  Y +HP   ++V G +G    
Sbjct: 301 AVVASKEIDIED-TLGCRA---LVIVEDTNAVLAALASSFY-RHPSKNMSVIGVTGTDGK 355

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSP------IYLAKALSYLSSQGV 182
            +    I         + G  ST+S +   DN+L TP+       + +   ++ +   G 
Sbjct: 356 TTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGT 415

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKE 241
             + +EAS   L   + D +      FTNL R++ D+  T + Y +A+ +LF  ++ P+ 
Sbjct: 416 ESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPER 475

Query: 242 SPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              ++  DD  +   +++ + N      ++      +H  K      + QV ++      
Sbjct: 476 HRKVVNIDDPNAAFFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGIL 535

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G + V
Sbjct: 536 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG-VIV 594

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+A+T + L  +L +IR +   RII V GC G+ ++GKRP+M KIA + +D+ ++T DNP
Sbjct: 595 DHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNP 654

Query: 421 RSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNK 458
           R+EDP  I  +++ GI   +++               G+R+        A+R A+ M  +
Sbjct: 655 RNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEE 714

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD 485
            D++VVAGKGHE   +   GEKK   D
Sbjct: 715 GDMVVVAGKGHEAYQL--EGEKKEFYD 739


>gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51679 [Arabidopsis
           thaliana]
          Length = 767

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 248/507 (48%), Gaps = 46/507 (9%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      + +I  +  DSR + AG +FV  +G++     F+ +A  +GA 
Sbjct: 245 ELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGSEN----FLSEADKRGAV 300

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V S    ++D +   R+   +++V++T   L+  AS  Y +HP   ++V G +G    
Sbjct: 301 AVVASKEIDIED-TLGCRA---LVIVEDTNAVLAALASSFY-RHPSKNMSVIGVTGTDGK 355

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSP------IYLAKALSYLSSQGV 182
            +    I         + G  ST+S +   DN+L TP+       + +   ++ +   G 
Sbjct: 356 TTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGT 415

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKE 241
             + +EAS   L   + D +      FTNL R++ D+  T + Y +A+ +LF  ++ P+ 
Sbjct: 416 ESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPER 475

Query: 242 SPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              ++  DD  +   +++ + N      ++      +H  K      + QV ++      
Sbjct: 476 HRKVVNIDDPNAAFFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGIL 535

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G + V
Sbjct: 536 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG-VIV 594

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+A+T + L  +L +IR +   RII V GC G+ ++GKRP+M KIA + +D+ ++T DNP
Sbjct: 595 DHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNP 654

Query: 421 RSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNK 458
           R+EDP  I  +++ GI   +++               G+R+        A+R A+ M  +
Sbjct: 655 RNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEE 714

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD 485
            D++VVAGKGHE   +   GEKK   D
Sbjct: 715 GDMVVVAGKGHEAYQL--EGEKKEFYD 739


>gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
 gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
          Length = 487

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 229/456 (50%), Gaps = 31/456 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G  FVA+ G++ DG  FI  AIA GA A++  +    +      R+   ++ V
Sbjct: 26  DSRRVRPGDCFVAVAGHQVDGRDFIDSAIALGAVAVLADADADGRQAD---RNGVIVVGV 82

Query: 96  DNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            N  + LS  A R Y       ++ VTGT+GK++V     Q+    G    Q G   T+ 
Sbjct: 83  HNLSQRLSALALRAYPAATRPTLIGVTGTNGKTTVTQLCAQLLTALG---HQAGVMGTVG 139

Query: 155 SFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +    + +    TT   I +A+ L   +  G   V++E SSHGL Q R+  + +  G +T
Sbjct: 140 NGLWGDLIPSVNTTSDAITVARELDRQAKSGAEAVALEISSHGLSQSRVAALPVQVGVYT 199

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLS 269
           NL RDH+DYH    AY +AK +LF   LP     +   DD    E   R H      +L+
Sbjct: 200 NLSRDHLDYHGDMAAYADAKRQLFA--LPGLRHGVFNLDD----ETGSRWHRELSGSLLA 253

Query: 270 VGYQ-------GKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +GY        G ++ ++ V   H++  +   +S  G+      PL G F + N L A G
Sbjct: 254 LGYSIQGARCDGAYLTVEGV-EYHDQGVRARVVSSFGQGT-LNSPLLGAFNLANLLAALG 311

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +++G   + +L  + +LH   GR E  GT+S    + VDYAHT ++L   L  +R   
Sbjct: 312 ALLSLGYSLSDLLSVVPQLHSAAGRMECFGTDSTP-TLVVDYAHTPDALSQALAALRPHC 370

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            G +  VFGCGG+RD GKRP+M + A   AD  I+T DNPRSE    I A++  G+ G  
Sbjct: 371 RGALWCVFGCGGERDSGKRPLMAQAAEQGADHLIITADNPRSEAFADIAAQMEAGLTGQA 430

Query: 441 EK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           E   +R  A+R A       D++++AGKGHE   I+
Sbjct: 431 EVIEDRAAAVRRAFAQAQPGDMVLLAGKGHEDYQII 466


>gi|331082373|ref|ZP_08331499.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400859|gb|EGG80460.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 497

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 245/508 (48%), Gaps = 44/508 (8%)

Query: 8   YKDFPELINQLSIFPMQW----RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           Y++  +L++ L     Q      +++I +++ DSR  + G +F  I G   DGH +  + 
Sbjct: 5   YENMKKLVDLLEKLEYQCLQGTMDKEITDITFDSRKAEKGCLFFCIKGAVSDGHTYAKEV 64

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA  ++V      QD    +     ++ V+N+R  ++  ++  +G HP   L   G 
Sbjct: 65  AEKGAAVLIV------QD-KVEVPEEVTVIQVENSRYAMACISAAWFG-HPAEKLKTIGI 116

Query: 124 SGKSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176
           +G     +    V+ I + +G   ++ G   TI +   + ++    TTP    + K  + 
Sbjct: 117 TGTKGKTTTTYLVKSILENAG---YKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234
           +   G   V +E SS GL  HR  G +   G FTN+  DHI  + H+    Y   K  LF
Sbjct: 174 MVEAGCDSVVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGPNEHKDFADYLRCKALLF 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
                K+    I+  DA   + +   H   C V + G+  K  +  +    +  K  + I
Sbjct: 234 -----KQCKVGIFNADAEHLDEILEGHT--CEVETFGFSEKADLRAENTKLVTGKGTLGI 286

Query: 294 SVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + + K   +F     LPG F VYN+L A  +C   G+    + + L++  V  GR E V 
Sbjct: 287 AYDVKGLMNFPVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKV-KGRIEMVK 345

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +     + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LA
Sbjct: 346 VSDEF-TLMIDYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLA 404

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ I+T DNPR E+P++I  +I  GI      ++E  +R EAI  AI      D++V+AG
Sbjct: 405 DLTIITSDNPRDEEPQEIIDDIKIGIGKTSGKYVEIIDRKEAIAYAIHHGQPGDIVVLAG 464

Query: 467 KGHETVHIVTNGEKKMSVDCDI-IREIL 493
           KGHE    +    KK  +D  + I+EIL
Sbjct: 465 KGHEDYQEIKG--KKYPMDERVLIQEIL 490


>gi|86152832|ref|ZP_01071037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843717|gb|EAQ60927.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 427

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 139/395 (35%), Positives = 208/395 (52%), Gaps = 50/395 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+K +A  FTN+ +DH+D+H T + Y  A
Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFTNITQDHLDFHGTFENYKEA 175

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++ + AI   
Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 230

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341
           +  T  ++        PL G F +YN LVA+  C+     + LV   L+ LEK       
Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISEFGG 277

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+
Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNK 458
           MGKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+   
Sbjct: 330 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRKEAIKKALELKEN 389

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 390 DDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423


>gi|50955154|ref|YP_062442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648714|sp|Q6AE59|MURE_LEIXX RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|50951636|gb|AAT89337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 514

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 195/399 (48%), Gaps = 27/399 (6%)

Query: 91  PILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           PI+V  + R  L   A+ ++    +   +  VTGT+GK+SV   +  I  + G+ +   G
Sbjct: 96  PIVVTADPRAALGAVAAWIHRTEDNAATLFGVTGTNGKTSVVYLLYAILGQLGIVA---G 152

Query: 149 PTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            TST    I   A  + LTTP    L   L+ +  +GV   ++E S+  L +HR+DGI+ 
Sbjct: 153 LTSTAERRIGEHAITSTLTTPEATELHALLARMREEGVRAAAIEVSAQALSRHRVDGIEF 212

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL  DH+D +     YF AK+ LF+    +    ++  D  +   +++++    
Sbjct: 213 DVAGFTNLSHDHLDDYTAMPDYFAAKLELFQP--DRARRGVVTVDSEWGHRLVEQSRIPV 270

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGL 321
             + SV   G     +         +   ++EG     L    PL G +   NA +A  +
Sbjct: 271 TTLSSVA--GSEADWRVTVLEETLARTAFALEGPGGRLLETSVPLLGAYNASNAALAIVM 328

Query: 322 CIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            +  G D   +   LE+       +PGR E + +  RG  +++DY HT ++    L  +R
Sbjct: 329 LVESGYDLDAIGAALERDGGIDAYIPGRAERL-SGDRGPVVFIDYGHTPDAFSSTLAALR 387

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +T+GRI++VFG  GDRD  KR  MG IA   AD  ++TD +PR EDP  IRA ++ G  
Sbjct: 388 RVTAGRIVMVFGADGDRDITKRAEMGAIAARGADAVVITDFHPRWEDPATIRAALLEGAR 447

Query: 438 GFIEKGNRIE------AIRTAIEMLNKQDVLVVAGKGHE 470
             + + +  E      A RTA+ +  + DV++ AG GHE
Sbjct: 448 NAVPERDLYEVPDPRTAFRTALSLAGEGDVVLYAGPGHE 486


>gi|296269381|ref|YP_003652013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
 gi|296092168|gb|ADG88120.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
          Length = 524

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 232/470 (49%), Gaps = 51/470 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +Q G ++VA+ G+   G  F  +A A GA AI+  +A   +     + + 
Sbjct: 36  ITGISIDSRRVQRGDLYVALPGSTAHGADFAAEASAAGAVAILTDAAGRER----AVATG 91

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRS-GLSSFQ 146
            P+LVV + R  L   A+ +YG +P   L + G +G S  ++  F+ +   R+ G  +  
Sbjct: 92  LPVLVVPDPRAVLGRVAAWVYG-NPTADLTIIGVTGTSGKSTTTFLTEAGLRAAGHRTGL 150

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     +       RLTTP    L    + +  QGVT  ++E SSH L   R+  I   
Sbjct: 151 IGGVEIRVGDLRFPARLTTPEASELQALFALMREQGVTAAAMEVSSHALALGRVAEIIYD 210

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAH--- 261
              FTNL +DH+D+H+    YF AK RLF    P  S   ++  DD Y +E+ +RA    
Sbjct: 211 VAIFTNLSQDHLDFHRDLDDYFAAKARLFT---PDHSRLGVVNIDDRYGRELAERAKIPI 267

Query: 262 ---------NAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                    +A  RV  V  G  G    +             +   G + D    LPG F
Sbjct: 268 TTFSPSGDADADWRVADVRLGADGSVFRV-------------VGPGGVETDVSVALPGAF 314

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL A    +  G+     +  +     VPGR E V       +++VDYAH   ++E
Sbjct: 315 NVANALAALVALVEAGVPVPAAVAGIGMTTCVPGRMERV-PGPGDIQVFVDYAHKPAAVE 373

Query: 371 MILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +L+++R +  +  R+++V GCGGDRD+GKRP+MG+ A  LAD AI T+DNPRSEDP  I
Sbjct: 374 SVLRSLRAVMGSGRRLVIVVGCGGDRDRGKRPLMGEAAARLADAAIFTNDNPRSEDPLAI 433

Query: 429 RAEIIHG---IPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            A ++ G   +P       I + +R  AI  AI      DV++VAGKGHE
Sbjct: 434 LAAMLSGALRVPAAERAHVIVEPDRAAAIDLAISTARSGDVVLVAGKGHE 483


>gi|226357198|ref|YP_002786938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus deserti VCD115]
 gi|226319188|gb|ACO47184.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Deinococcus deserti VCD115]
          Length = 493

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 147/457 (32%), Positives = 222/457 (48%), Gaps = 38/457 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ ++  +Q G+ FVAI G K DGH F+ Q    GA A++       +     + S  P 
Sbjct: 25  VTHNAAWVQPGFAFVAIRGAKFDGHSFLQQVREAGAVAVLG------EGMPDGMNSPLPY 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L V + R  L+  A+ L G HP     ++ VTGT GK++ +   + + + +GL   Q G 
Sbjct: 79  LTVPSARAALADAAAALAG-HPSRALKVVGVTGTDGKTTTSWLTRHLLREAGL---QTGL 134

Query: 150 TSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            ST+     D  L       TTP    + + L  + + G + V +EASSH L   R+ G+
Sbjct: 135 LSTVGFELPDGELRHFPAHFTTPEAPQVQQTLQDMVAAGASAVVLEASSHALALDRVRGV 194

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 +T+L  +H+D+H T + YF  K RL E    +   A++ ADD ++ ++   A  
Sbjct: 195 DWDVAVWTHLTSEHLDFHGTVENYFADKRRLVE----RAPFAVLNADDPWTGQLRGVAPA 250

Query: 263 AGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                L      +Q   I  +++  +H +    +      FD   P+ G F V NAL A 
Sbjct: 251 ETTYSLDGAGADWQATDIQ-ERLTGLHFQVNSPLGA----FDAALPMIGRFNVANALAAM 305

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                +G D+A +   L     VPGR E V    +  R+ VD+AHT  SLE  L  +R  
Sbjct: 306 AAAAHLGADAAQLAAGLASFRGVPGRMELVPAGGQEVRVIVDFAHTPPSLEKALSTLRAT 365

Query: 380 TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
           T+GR+ V+ G  GG RD GKR  +G++A  LAD A+ T+++ R    E I  E+  G   
Sbjct: 366 TTGRLWVLIGSAGGPRDPGKRAPLGEVATRLADHAVFTEEDSRDTPLEDILREMERGARQ 425

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                FI  G+R EAIR  I+     D +++AGKG E
Sbjct: 426 GGRTNFISIGDRREAIRHVIQAAGSGDTVLLAGKGPE 462


>gi|148238930|ref|YP_001224317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
 gi|166224792|sp|A5GJA5|MURE_SYNPW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|147847469|emb|CAK23020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
          Length = 499

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 153/478 (32%), Positives = 237/478 (49%), Gaps = 38/478 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR +  G +F+ + G + DG  F P A+A GA A+++    +     A   S 
Sbjct: 25  VTALTCDSRCVGQGSLFIGLPGERVDGGSFWPAALASGAAAVLIGEQAAAAHPPAPGDS- 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +LVV +   F +   +  + + P     ++ VTGT+GK++    ++ + Q  G  +  
Sbjct: 84  --VLVVPDPVAFWAGELASAFWQRPSMRMELIGVTGTNGKTTTTHLIEHLSQACGRPAAL 141

Query: 147 IG------PTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ 196
            G      P  ++++       +RL       LA+AL     +G T V+ +E SSH LDQ
Sbjct: 142 FGTLVNRWPGHSLTATHTTAAADRLQA----QLAEAL-----EGGTQVAAMEVSSHALDQ 192

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESP-AIIYADDAYSK 254
            R+ G +     FTNL +DH+DYH + +AYF AK  LF    L  E P A++  DD + +
Sbjct: 193 QRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKALLFASPYLVGEGPRAVVNVDDPWGR 252

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++  R      R  S+ ++     +  +    N     +     +  F  PL G F + N
Sbjct: 253 QLADRLGERAWRC-SLAHEADLT-MADLRMTSNGVDGALRTPLGEGRFHSPLVGRFNLMN 310

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTSNSLE 370
            L A G  +  G+   L+L  L     VPGR E +            + VDYAHT + L 
Sbjct: 311 VLQAVGALLQQGLPLPLLLNALPSFRGVPGRMERIVLTGSAAEDHPAVLVDYAHTPDGLR 370

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+  R    G++I VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+EDP +I  
Sbjct: 371 NALEACRPFVRGQLICVFGCGGDRDRGKRPQMAAIAAALADQVVVTSDNPRTEDPGQILD 430

Query: 431 EIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +++ G+P   E+    +R +AI  AI      D++++AGKGHE   I+  G +K+  D
Sbjct: 431 DVVAGLPADAERQVEVDRAKAIALAIAQARCGDLVLIAGKGHEDYQIL--GTEKVHFD 486


>gi|57168799|ref|ZP_00367930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
 gi|57019846|gb|EAL56529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
          Length = 427

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 142/442 (32%), Positives = 218/442 (49%), Gaps = 63/442 (14%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
           + +A ++   S  +     I+ V+  +K L +          ENI  + +TGT+GK++ A
Sbjct: 24  LKTAQNMNFASDALEKGAKIIDVEECKKLLKI---------DENIKIIGITGTNGKTTTA 74

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYL---SSQGVT 183
           + +  I    G   F+ G   T  +F  D ++     T SPI   K L YL   + +   
Sbjct: 75  AAIYSILLDLG---FKCGLCGTRGAFINDEQIDEKSLTTSPIL--KTLEYLQLATQKKCD 129

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SSH L Q+R++G+K  A  FTN+ +DH+D+H   + Y  AK   F +    ES 
Sbjct: 130 FFIMEVSSHALVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFFTD----ESL 185

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             I  D    K  ++ A        + G +   ++  K  ++ +     ++++ + F   
Sbjct: 186 KFINKDTLMIKFNVRNA-------FTYGIENPSLYQVKAYSLEDGISAIVALKDQSFHID 238

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-------VPGRFEFVGTNSRGG 356
            PL G F +YN L+AA  C+     + LV  +L+ L         V GR E V       
Sbjct: 239 SPLLGLFNLYN-LLAASACV-----NELVKPNLKDLEKAISGFGGVCGRVEQVANG---- 288

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+MGKI    A IAI+T
Sbjct: 289 -IIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAIIT 344

Query: 417 DDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPRSE+P+ I  EI+ G         IE  +R EAI  A+++  K D++V+ GKG E 
Sbjct: 345 SDNPRSEEPKDIMNEILSGFQNPDKALMIE--DRKEAINKALKLKEKDDLVVILGKGDEN 402

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    D  I+ EIL
Sbjct: 403 TQEI-KGIKHPFSDKAIVNEIL 423


>gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptothrix cholodnii SP-6]
 gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii
           SP-6]
          Length = 513

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 153/506 (30%), Positives = 229/506 (45%), Gaps = 46/506 (9%)

Query: 23  MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV----SS 75
           + W   ++    E+ +DSR ++AG  F+A  G+  DG  ++  A+A GA A ++    ++
Sbjct: 13  LAWLRARLGDAAELRTDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAA 72

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
           A+   D          I  +   +      A R YG+    +  +A +GT+GK+S A + 
Sbjct: 73  AFGFDDER--------IAALPGLKAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWT 124

Query: 134 QQICQRSGLSSFQIG------PTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185
            Q    +G     IG      P S +   AQ     LTTP P+ L ++L   +  G    
Sbjct: 125 AQALSLAGQRCGVIGTLGVGEPPSRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAAC 184

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++EASS G+ +HRLD   +    +TN   DH+DYH    AY+ AK  LF+   P    A 
Sbjct: 185 AIEASSIGIVEHRLDAAPIRVALYTNFTPDHLDYHGDMVAYWLAKRALFD--WPGLQAAA 242

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGK-DFDFL 303
           I  DDA    +       G   L      +   L+     +    +  ++ EG+ D    
Sbjct: 243 INVDDAQGAVLADELAARGDLDLWTYALHRDARLRATGLHYVDGGLAFTLHEGETDVAVH 302

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----- 358
             L G +   N L   G   A+G+  A       +   VPGR   V   S  G +     
Sbjct: 303 THLIGAYNASNVLAVIGGLRALGLPLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVV 362

Query: 359 -----YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                 VDYAHT ++L+  L  +R +     GR++ VFGCGG+RD  KRP MG IA  LA
Sbjct: 363 ALPQVVVDYAHTPDALDKALSALRPVAHAQGGRLVCVFGCGGNRDATKRPQMGAIAAQLA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D   VT DNPR E+P+ I  +I+ G  G      + +R  AI   +     +DV+++AGK
Sbjct: 423 DAVCVTSDNPRLEEPQAIVDQILAGCAGAAHVRAEVDRTRAIEQVLAQAAPEDVVLIAGK 482

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K+   D D+    L
Sbjct: 483 GHEDYQDI-GGVKRPFSDIDVATAAL 507


>gi|86152303|ref|ZP_01070514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85840792|gb|EAQ58043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 427

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 139/394 (35%), Positives = 206/394 (52%), Gaps = 48/394 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+  +A  FTN+ +DH+D+H T + Y  A
Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFVAKIFTNITQDHLDFHGTFENYKEA 175

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++ + AI   
Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKVYSLEEGISAIVTN 230

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK----LHVVPG 344
           +  T  ++        PL G F +YN LVA+  C+   I   L  + LEK       V G
Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CVNELIKPDL--KDLEKAISGFGGVCG 280

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+MGK
Sbjct: 281 RVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPLMGK 332

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
           I    A IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+    
Sbjct: 333 IVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELKEND 390

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 391 DLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423


>gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 508

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 227/478 (47%), Gaps = 42/478 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I+ ++  S+ +  G++F A+ G   DGH FI  AI  G+  IV S      +     
Sbjct: 25  DLEISGITYSSKLVLPGFVFFALSGIHFDGHDFIEIAIQNGSNVIVCSRDLDFYN----- 79

Query: 87  RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
             N   + +D  N +KF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+
Sbjct: 80  -PNVTYIKIDDFNIKKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLRKKGV 138

Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              ++G  ST+  F  D          R +TP    +   LS +    V +  +E++SHG
Sbjct: 139 ---KVGFISTV--FFDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHG 193

Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           LD    RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD 
Sbjct: 194 LDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFGVINLDDF 253

Query: 252 YS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           YS   K  +K++     +     +   FI+ K      +  +     +G  +     L G
Sbjct: 254 YSYDFKNAIKKSFTYSLKNSQADFFVSFINEKT-----DSTEFEFYHKGVKYFANVNLLG 308

Query: 309 EFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            F V N + A  L   I   D   ++++L  +  + GR + +    +   + +DYAHT  
Sbjct: 309 SFNVENVMAALILVSKILNSDIQDIVDNLSCIKSLDGRMDSINL-GQNFSVIIDYAHTPG 367

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +   +    +  T+ R+I VFG  G+RD  KR + G+I+   +D+ ++ D++PR E+   
Sbjct: 368 AFSKLFPIFKKFTTNRLISVFGSAGERDFAKRFLQGQISDSYSDLIVLCDEDPRGENSMC 427

Query: 428 IRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  +I  GI   +         +R +AI  AI +    D++V  GKGHE+  I  NGE
Sbjct: 428 IIKDIAKGIVNKVANQDLFFIPDRKQAIEKAISLARAGDLIVTLGKGHESSIIYKNGE 485


>gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
 gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
          Length = 491

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 145/483 (30%), Positives = 237/483 (49%), Gaps = 36/483 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+ K   +++             +++ + +DSR +  G  FV I G   DGH FI
Sbjct: 1   MKLKDLLTKLEYKVVKGSDTI-------EVSHLQNDSRKVSDGDAFVCIKGAGFDGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +++GA A+VV     + +    ++       VD+TR  L+  ++  +G   E ++ V
Sbjct: 54  RDVVSKGAVAVVVMEDVEVDEDVTVVK-------VDDTRLALACMSADYFGNPAEKLITV 106

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             TGT GK++    V+ + +  G+ +  IG   TI        + TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYMVRSVLESVGIKTGLIGTIETIIGDEVTPAKNTTPESYVVQETFAKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
             QG   V +E SS GL  HR+ G     G FTN+  DHI  + H+    Y + K  L +
Sbjct: 167 VEQGCKCVVMEVSSQGLMLHRVSGFTFDYGIFTNIEPDHIGPNEHKDFDDYLHCKSMLLK 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VT 292
           +        I+  D  +   V++  H   C + + G  G +    +   +  K     V+
Sbjct: 227 QC----KHGIVNMDADFIDRVLE-GHT--CDIETYGVNGDYDFKAQDIKLFTKPGCLCVS 279

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             ++GK DF     +PG F VYN+L A  +C     D   +   LE + V  GR E +  
Sbjct: 280 YDLKGKMDFPVEIHVPGMFSVYNSLCAIAICSHFTEDVEKIQTALENVKV-KGRVEIIPI 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + R   + +DYAH + SLE +L +++     R++ VFGCGG+R + +R  MG+++  L+D
Sbjct: 339 SKRF-TLMIDYAHNAMSLESLLTSLKQYNPKRLVTVFGCGGNRSKERRFEMGEVSSRLSD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             IVT DNPR E+P  I  +I+ G+      ++   +R +AIR AI      DV+++AGK
Sbjct: 398 FTIVTSDNPRFEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILNAKDGDVIILAGK 457

Query: 468 GHE 470
           GHE
Sbjct: 458 GHE 460


>gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii
           L2-63]
          Length = 488

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 154/491 (31%), Positives = 250/491 (50%), Gaps = 50/491 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+DL       LIN    + +Q     +I+++  DSR ++ G  FV + G   DGH +
Sbjct: 1   MKLKDL-------LINVE--YTVQGNLNTEISDIIYDSRKVEKGTAFVCLKGYTSDGHRY 51

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118
              A+ +GA A+V+S +   +     + S+  ++ V++TR  LSL +   +G HPE+ L 
Sbjct: 52  AKSAVEKGASALVISDSLDFE-----VPSDVAVVKVEDTRYALSLMSIEFFG-HPEDELY 105

Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKA 173
             A+TGT GK++  + V +I + +G+ +  IG    +    +   DN  TTP    + K+
Sbjct: 106 TVAITGTKGKTTTTAMVAEIFEHAGIKTGTIGTLGVVYGGETHKTDN--TTPESYIIQKS 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           +  + + G   + +EASS GL   RL G+    G FTN   DHI    H+    Y   K 
Sbjct: 164 MRDMINAGCKAMVIEASSIGLKHSRLAGMTFDVGIFTNFSDDHIGGVEHKDLAEYLYCKS 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY------QGKFIHLKKVCAI 285
            LF +   K + A I  DD   K++ K    +   VL+ G+      +GK  HL    + 
Sbjct: 224 LLFRQC--KFAAANI--DDPAWKDITKDFKGS---VLTYGFADNADLKGKNAHL---LSE 273

Query: 286 HNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVP 343
           +    V    EG K+      +PG+F  YNAL A + +     I+  ++++ L K+  V 
Sbjct: 274 NGFVGVHFETEGIKNLSVDVDIPGKFNAYNALAAISAVSFFDEIEDQMIIDAL-KVAKVK 332

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E V        I +DYAH + S+E +L+ +R     R+I +FG GG+R + +R  MG
Sbjct: 333 GRVERVPVPYNYTLI-IDYAHNALSMENVLETLRQYNPHRLITMFGAGGNRPKVRRYEMG 391

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQ 459
           + +  L+D+++VT+DN R ED   I  +I  G+      ++   NR +AI+  ++     
Sbjct: 392 ETSGRLSDLSVVTEDNSRFEDVMDIIEDIKTGLAKTDGKYVVVPNRRDAIKYCMDNAEDG 451

Query: 460 DVLVVAGKGHE 470
           D++V+AGKGHE
Sbjct: 452 DIIVLAGKGHE 462


>gi|157415861|ref|YP_001483117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386825|gb|ABV53140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748498|gb|ADN91768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931687|gb|EFV10648.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 427

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 208/397 (52%), Gaps = 54/397 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+K +A  FTN+ +DH+D+H T + Y  A
Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFTNITQDHLDFHGTFENYKEA 175

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++ + AI   
Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIATN 230

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341
           +  T  ++        PL G F +YN LVA+  C+     + LV   L+ LEK       
Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGG 277

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+
Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456
           MG I    A IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+ 
Sbjct: 330 MGTIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELK 387

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 388 ENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423


>gi|153952381|ref|YP_001398918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939827|gb|ABS44568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. doylei 269.97]
          Length = 427

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 208/397 (52%), Gaps = 54/397 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+K  A  FTN+ +DH+D+H T + Y  A
Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFTNITQDHLDFHGTFENYKEA 175

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++ + A+   
Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAVATN 230

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341
           +  T  ++        PL G F +YN LVA+  C+     + LV   L+ LEK       
Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISEFGG 277

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+
Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456
           MGKI    A IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+ 
Sbjct: 330 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELK 387

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 388 ENDDLVVILGKGDETTQEI-KGVKYPFNDKVVVNEIL 423


>gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
 gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
          Length = 506

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 222/467 (47%), Gaps = 41/467 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ ++  DSR I    +FV +VG   DGH +IP A+ +GA  IVV       + +A I  
Sbjct: 22  EVRDIIYDSRKIAKETMFVCMVGAVTDGHKYIPDAVEKGASVIVVER----DEEAAQIPG 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +L V++ R  L+L ++ L+  +P   L   G +G     +    I      +  ++G
Sbjct: 78  TITVLKVESARYALALMSAALF-DYPAEKLITIGLTGTKGKTTTTYMIKNVLEAAGKKVG 136

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TI +   D ++    TTP    L +  + +   G  +  +E SS GL   R  GI  
Sbjct: 137 LIGTIGAMIGDEKIPSKNTTPESYELHRMFASMVEAGCEYAVMEVSSQGLKMDRTAGIMF 196

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G FTNL  DHI  + H + + Y   K  LF +        I+ ADD +S+ V   A N
Sbjct: 197 DYGVFTNLSPDHIGPNEHASFEEYLECKSMLFRQC----KIGILNADDEHSEAV---AAN 249

Query: 263 AGCRVLSVG--------YQGKFIHLKKV----CAIHNKQQVTISVEG-KDFDFLFPLPGE 309
             C + S G        + GK + L          + K  +   V+G  D +    +PG 
Sbjct: 250 HTCEIHSFGVEDNNEKTFLGKPLDLVAADLGFIKENGKLGMYFHVKGCMDCEARVHIPGR 309

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F VYN+LV   +C   GI    +L+ L K+ V  GR E +   S+   + +DYAH   S 
Sbjct: 310 FSVYNSLVTMLVCHLAGISDQAILDGLNKVQV-KGRVEMLPV-SKDYYLIIDYAHNEVST 367

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L  +      R+I V+G GG+R + +R  MG++  ++AD+ ++T DNPR E+   I 
Sbjct: 368 RSVLTTLMEYHPKRLICVYGGGGNRSKLRRYDMGEVTGEMADLCVLTCDNPRDEEIRDIN 427

Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKGHE 470
            +I  G+      +IE  +R EAI  A  M+N Q  D++V+ GKGHE
Sbjct: 428 NDIKVGLAKSNGKYIEIDDRKEAI--AYCMVNAQPGDMIVLLGKGHE 472


>gi|305432459|ref|ZP_07401621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
 gi|304444498|gb|EFM37149.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
          Length = 427

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 141/442 (31%), Positives = 218/442 (49%), Gaps = 63/442 (14%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
           + +A ++   S  +     I+ V+  +K L +          ENI  + +TGT+GK++ A
Sbjct: 24  LKTAQNMNFASDALEKGAKIIDVEECKKLLKI---------DENIKIIGITGTNGKTTTA 74

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYL---SSQGVT 183
           + +  I    G   F+ G   T  +F  D ++     T SPI   K L YL   + +   
Sbjct: 75  AAIYSILLDLG---FKCGLCGTRGAFINDEQIDEKSLTTSPIL--KTLEYLQLATQKKCD 129

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SSH L Q+R++G+K  A  FTN+ +DH+D+H   + Y  AK   F +    ES 
Sbjct: 130 FFIMEVSSHALVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFFTD----ESL 185

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             I  D    K  ++ A        + G +   ++  K  ++ +     ++++ + F   
Sbjct: 186 KFINKDTLMIKFNVRNA-------FTYGIENPSLYQVKAYSLEDGISAIVALKDQSFHID 238

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-------VPGRFEFVGTNSRGG 356
            PL G F +YN L+AA  C+     + LV  +L+ L         V GR E V       
Sbjct: 239 SPLLGLFNLYN-LLAASACV-----NELVKPNLKDLEKAISGFGGVCGRVEQVANG---- 288

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+MGKI    A IAI+T
Sbjct: 289 -VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAIIT 344

Query: 417 DDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPRSE+P+ I  EI+ G         IE  +R EAI  A+++  K D++V+ GKG E 
Sbjct: 345 SDNPRSEEPKDIMNEILSGFQNPDKALMIE--DRKEAINKALKLKEKDDLVVILGKGDEN 402

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    D  I+ EIL
Sbjct: 403 TQEI-KGIKHPFSDKAIVNEIL 423


>gi|124023806|ref|YP_001018113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964092|gb|ABM78848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9303]
          Length = 538

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 154/490 (31%), Positives = 240/490 (48%), Gaps = 62/490 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           VS DSR +  G +F+ + G + DG  F  QA+A        + A  +   +A +R   P 
Sbjct: 59  VSCDSRAVARGCLFLGLPGEQVDGGSFWRQALAA------GAEAAVIGPAAAALRPPGPK 112

Query: 92  ---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
              ++V +    ++   A+  + + P + LA+ G +G +   +    ++ +    G S+ 
Sbjct: 113 DAVVVVSEPVAAWVGQLAAAFW-QQPSSRLALIGVTGTNGKTTTTHLIEHLSVAVGRSTA 171

Query: 146 QIG-----------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             G           P +  ++FA  +RL       LA+A+   +  G    ++E SSH L
Sbjct: 172 LFGTLVNRWPNYSVPATHTTAFA--DRLQA----QLAQAVEAGAELG----AMEVSSHAL 221

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAY 252
           +Q R+ G +     FTNL +DH+DYH + +AYF AK +LF   L +   + A++  D  +
Sbjct: 222 EQQRVAGCRFAGAVFTNLTQDHLDYHSSMEAYFEAKAQLFAPPLLESGSAKAVVNIDGPW 281

Query: 253 SKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGK------DFDF 302
              + +R  +   R  L+ G       L++  A     ++T+S   V+G+      +  F
Sbjct: 282 GARLAQRLGDTCWRSSLAEGV------LQRADAELTMTELTMSSAGVQGRLISPCGEGWF 335

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRI 358
             PL G F + N L A G+ +  G+   L+L+ +     VPGR E V       S+   +
Sbjct: 336 DSPLLGRFNLMNLLQAVGVLLQQGLPLPLLLKAIADFRGVPGRMERVLIPAADASQVPTV 395

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE  L   R  TS  +  VFGCGGDRD+GKR  M  IA  LAD  +VT D
Sbjct: 396 LVDYAHTPDGLENALTASRPFTSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVTSD 455

Query: 419 NPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+EDP++I  +++ GIP       + +R  AI  AI      DV++VAGKGHE   I+
Sbjct: 456 NPRTEDPQQILVDVVAGIPQGTALTVEVDRAVAIALAIAEAGPGDVVLVAGKGHEDYQIL 515

Query: 476 TNGEKKMSVD 485
             G  K+  D
Sbjct: 516 --GTSKVHFD 523


>gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
 gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
          Length = 505

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/485 (28%), Positives = 229/485 (47%), Gaps = 60/485 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +  G++F A+ G + DGH FI  AI  G+  IV S      DF +    
Sbjct: 27  EISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNVIVHSRD---MDFYSP--- 80

Query: 89  NTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD+   RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-- 195
            ++G  ST+       S      R +TP    +   LS +   GV +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAILESTSHGLDLK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS E
Sbjct: 198 TARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSE 257

Query: 256 ---VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305
               +K++     +     +   FI+ K              ++   F+F +        
Sbjct: 258 FKNAVKKSFTYSLKSSQADFFVSFINEK--------------IDSTRFEFYYKGVKYFAN 303

Query: 306 --LPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             L G F V N + A  L   I   D   +++ L  +  + GR + +    +   + +DY
Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMDSINL-GQNFSVIIDY 362

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT  +   +    +   + R+I VFG  G+RD  KR + G+I+   +D+ ++ D++PR 
Sbjct: 363 AHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYSDLILLCDEDPRG 422

Query: 423 EDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           E+   I  +I  GI          FI   +R +AI  AI +    D++VV GKGHE+  I
Sbjct: 423 ENSMCIIKDIAKGIVNKVVNQDLFFIP--DRKQAIEKAISLARAGDLVVVLGKGHESSII 480

Query: 475 VTNGE 479
             N E
Sbjct: 481 YKNRE 485


>gi|294812137|ref|ZP_06770780.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440707|ref|ZP_08215441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294324736|gb|EFG06379.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
          Length = 561

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 144/477 (30%), Positives = 233/477 (48%), Gaps = 33/477 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL  +L +      E  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A++
Sbjct: 64  ELAARLGVSDPAADEVTVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAGLGAAAVL 123

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130
              A +  D +A   +  P+LV +N R  +   A+ +YG   E +L   +TGTSGK++  
Sbjct: 124 TDPAGA--DRAAA--TGLPVLVTENPRARMGELAAEVYGHPGEGLLQIGITGTSGKTTTV 179

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186
             ++   + +G ++  +G   T+ +   + R+    TTP    L    + +  +GV  V+
Sbjct: 180 YLMEGGLRAAGRATGLVG---TVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVA 236

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF     +    ++
Sbjct: 237 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPARSRRG--VV 294

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFP 305
             DDAY + +   A        + G+       + V        +T +   G       P
Sbjct: 295 NLDDAYGRRLAAEATVPVTTFSAEGHPDADWRAEDVEVGPLGSTLTLVGPGGVRVSARAP 354

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDY 362
           LPG F V N + A       G+D     + +  +  VPGR E V      G+ Y   VDY
Sbjct: 355 LPGPFNVANTVAAVVALATAGVDPQTAADGVAAVPGVPGRLERVDE----GQPYLAVVDY 410

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH +++++ +L+++R +T GR+ +V GCGGDRD+ KR  MG  A  LAD A++T DNPRS
Sbjct: 411 AHKTDAVDSVLRSLRKVTEGRLHIVLGCGGDRDETKRGPMGAAAARLADTAVLTSDNPRS 470

Query: 423 EDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470
           EDP  I A ++ G   +P   E+G  +       A+  A+      D +++AGKGHE
Sbjct: 471 EDPLAILAAMLAGAAEVPAH-ERGQVLVDADRAAAVAAAVARAEPGDTVLIAGKGHE 526


>gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
          Length = 508

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 225/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  +V S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYS---P 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAIKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I  ID   +++ L  +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +  T+ R+I VFG  G+RD  KR + G+IA   +DI I+ D++PR E+   I  +
Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDIIILCDEDPRGENSMCIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|332298508|ref|YP_004440430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
 gi|332181611|gb|AEE17299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
          Length = 557

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 158/502 (31%), Positives = 225/502 (44%), Gaps = 66/502 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++  DSR ++AG +F A+ G    G+ FI +AIA+GA AIV           A    N
Sbjct: 25  ITDICFDSRAVRAGSLFFALPGTHVHGNAFIAKAIARGAAAIVYQDDLPEDALRAAEERN 84

Query: 90  T----PILV-VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
                P+LV V + R  +S  A   Y    E   ++ VTGT GKSS  SF+ Q+    GL
Sbjct: 85  NEAEAPVLVRVRDARFAMSPAADAFYDSPSEKLAVIGVTGTEGKSSTVSFIWQLL---GL 141

Query: 143 SSFQIGPTSTI------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              + G  ST+       + A     TTP    + + L  +   G  +  VE+SSHGL +
Sbjct: 142 CGKKAGFISTVQYSLGDDAIANPEHQTTPEAPIVQRQLYEMVQNGCEYAVVESSSHGLSR 201

Query: 197 --HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---------------LP 239
             +RL  ++  AG F N+  +H+++H T + Y + K  LF  L               +P
Sbjct: 202 KTNRLGDVRFDAGVFMNVTHEHLEFHGTHEQYKSDKANLFRALDAHDHLKTIGGTRRRVP 261

Query: 240 K------ESPAIIYADDAYSKEVM------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                  E PA  Y +DA  K V           NA   +  +  +       +V A  +
Sbjct: 262 AFGVVNLEDPAAAYFNDATEKTVYGFTTGGAAGKNADIPLPEIPAEIPRFSADRVAAKSD 321

Query: 288 KQQVTISVEGKD---------FDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLE 337
               T +V   D              PLPG F VYN L +   +    GI  A V E   
Sbjct: 322 GIAFTANVPPSDTIRATAPDPVAVTAPLPGAFNVYNVLASLITVSTITGIPFARVAEKCP 381

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +L  V GR   +    +   + VDYAHT +S E I   +R     RIIV+FG GG+RD  
Sbjct: 382 QLQPVKGRMTVI-DKGQPFEVIVDYAHTPSSFETIFPPLRKRARNRIIVLFGSGGERDTK 440

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGN-------RIEA 448
           KRP  G+IA    D+ I+ D++PR+EDP  +   I  G    G  E GN       R +A
Sbjct: 441 KRPEQGRIAARWCDVVILADEDPRAEDPAALLEMIAAGCRSAGKTE-GNGLYVVPPRPQA 499

Query: 449 IRTAIEMLNKQDVLVVAGKGHE 470
           IR A  +  + D++++ GK HE
Sbjct: 500 IRKAFALAAEGDIVLLLGKAHE 521


>gi|52142904|ref|YP_083926.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976373|gb|AAU17923.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 357

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 165/338 (48%), Gaps = 41/338 (12%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           + T  P  L + L  + ++   +  +E +S GL   R+ G       FTNL +DH+DYH 
Sbjct: 17  INTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHG 76

Query: 222 TQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           T   Y + K  LF  L       ++  A++ ADD  S E  K+  +A   V++ G     
Sbjct: 77  TFLEYKHVKGLLFARLGNDLSTTEKKIAVLNADDP-SVEYFKKITSA--EVITYG----- 128

Query: 277 IHLKKVCAIHNKQQV---TISVEGKDFDFL-----------FPLPGEFQVYNALVAAGLC 322
                   IHN+  V    I++  K   FL             L G F +YNAL A  + 
Sbjct: 129 --------IHNRADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNIYNALAAITVA 180

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  I   + G
Sbjct: 181 IVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFFVIVDYAHTPDALENVLSTISEFSKG 239

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           ++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I  G       
Sbjct: 240 KVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNL 299

Query: 443 GNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             ++E     AI  AI M +  D++++AGKGHET  I+
Sbjct: 300 NYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 337


>gi|261368781|ref|ZP_05981664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282569127|gb|EFB74662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 486

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 156/485 (32%), Positives = 226/485 (46%), Gaps = 42/485 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  ++ DSR    G +FV +VG   DGH F   A  QG  A +V     L       
Sbjct: 17  DAEITAITYDSRKAGPGALFVCLVGAWMDGHTFARSAYDQGCRAFLVEHTLDLP------ 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++   +V  +TR  L++  +  YG   E +  + +TGT GK++ A     I   +GLS 
Sbjct: 71  -ADVAQIVTQDTRAALAVIGADFYGNPAEQLHIIGITGTKGKTTTALLTSAILTEAGLSC 129

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     I+   +    TTP  + L +    +    V HV +E SS  L  HR+DGI 
Sbjct: 130 AYIGSNGVNIAGTHEATANTTPESLELHRLFRKMLDANVHHVVLEVSSQALRHHRVDGIP 189

Query: 204 LIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260
               +FTNL  DHI    H   + Y  AK RLF E     +  ++Y ADDA S  +  RA
Sbjct: 190 FEVVAFTNLSEDHIGPGEHPDFEDYKAAKRRLFAEY---NARVMVYNADDAVSDYM--RA 244

Query: 261 HNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGEFQVY 313
             AG +V   +G+   +   + V     + +  + ++      G+        PG F   
Sbjct: 245 GFAGQQVSFGIGHDADY---RAVDLAQYRSETALGIDFTCEHGGEATPVRVMSPGAFSAS 301

Query: 314 NALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSL 369
           +AL A  LC A G+    +A  L H      V GRFE V      GR + VDY+H   +L
Sbjct: 302 DALCAIALCGAFGVTPDQAAKTLAHTP----VEGRFEVV--EGLPGRTFIVDYSHNGLAL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              LK +R     R+I VFG  G R Q +R  + + A   AD +I+T DNP  EDP  I 
Sbjct: 356 TSALKTLRAYQPRRLICVFGSVGGRTQVRRRELAEAASAWADYSILTSDNPDFEDPMNIL 415

Query: 430 AEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            +I   +     +    +R EAIR A+ M    D+++ AGKGHE   ++  G+K   V+ 
Sbjct: 416 RDIDACMAPDALYALIPDRAEAIRQAVAMAEPGDIVLFAGKGHEDYQLI-QGKKVPFVER 474

Query: 487 DIIRE 491
           D+IRE
Sbjct: 475 DLIRE 479


>gi|121612468|ref|YP_001001284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167006178|ref|ZP_02271936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249826|gb|EAQ72785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 427

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/394 (35%), Positives = 206/394 (52%), Gaps = 48/394 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+  +A  FTN+ +DH+D+H T + Y  A
Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFVAKIFTNITQDHLDFHGTFENYKKA 175

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++ + AI   
Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 230

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK----LHVVPG 344
           +  T  ++        PL G F +YN LVA+  C+   I   L  + LEK       V G
Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CVNELIKPDL--KDLEKAISGFGGVCG 280

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+MGK
Sbjct: 281 RVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKQLIVVFGAGGDRDKTKRPLMGK 332

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
           I    A IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+    
Sbjct: 333 IVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELKEND 390

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 391 DLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423


>gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces lividans TK24]
 gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
 gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
          Length = 497

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 231/477 (48%), Gaps = 35/477 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL +QL +        +I  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A++
Sbjct: 10  ELADQLGVAAPDG-SAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVL 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130
              A + +  +A +    P LVVD+ R  +   A+ +YG    ++L   +TGTSGK++ A
Sbjct: 69  TDPAGAERAAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTA 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186
             V+    R+  S+  IG   T+     D R+    TTP    L    + +  +G   V+
Sbjct: 125 YLVEGGL-RTAKSTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVA 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AI 245
           +E SSH L   R+D        FTNL  +H+++H   + YF AK +LF    PK S   +
Sbjct: 181 MEVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLF---TPKRSRLGV 237

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304
           +  DD Y + + K A        + G+        +V     +     +  +G+      
Sbjct: 238 VNVDDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKS 297

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDY 362
           PL G F V N L A     A G+D     + +  +  VPGR E V     G   +  VDY
Sbjct: 298 PLAGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV---DEGQPFFAVVDY 354

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH ++++E +L+ +R +T G++  V GCGGDRD  KR  MG      AD A++T DNPRS
Sbjct: 355 AHKTDAVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRS 414

Query: 423 EDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           EDP  I A ++ G   +P   E+G      +R  AI  A+      D ++VAGKGHE
Sbjct: 415 EDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHE 470


>gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
 gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
          Length = 505

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 140/485 (28%), Positives = 228/485 (47%), Gaps = 60/485 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +  G++F A+ G + DGH FI  AI  G+  IV S      DF +    
Sbjct: 27  EISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNVIVHSRD---MDFYSP--- 80

Query: 89  NTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD+   RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-- 195
            ++G  ST+       S      R +TP    +   LS +   GV +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAILESTSHGLDLK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS E
Sbjct: 198 TARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSE 257

Query: 256 ---VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305
               +K++     +     +   FI  K              ++   F+F +        
Sbjct: 258 FKNAVKKSFTYSLKSSQADFFVSFIDEK--------------IDSTRFEFYYKGVKYFAN 303

Query: 306 --LPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             L G F V N + A  L   I   D   +++ L  +  + GR + +    +   + +DY
Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMDSINL-GQNFSVIIDY 362

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT  +   +    +   + R+I VFG  G+RD  KR + G+I+   +D+ ++ D++PR 
Sbjct: 363 AHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYSDLILLCDEDPRG 422

Query: 423 EDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           E+   I  +I  GI          FI   +R +AI  AI +    D++VV GKGHE+  I
Sbjct: 423 ENSMCIIKDIAKGIVNKVVNQDLFFIP--DRKQAIEKAISLARAGDLVVVLGKGHESSII 480

Query: 475 VTNGE 479
             N E
Sbjct: 481 YKNRE 485


>gi|205355653|ref|ZP_03222423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346430|gb|EDZ33063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 450

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 146/447 (32%), Positives = 224/447 (50%), Gaps = 61/447 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G E   + +  + +  +  +     I+ V+  +K L +            I+ +TGT+GK
Sbjct: 41  GKECFFLQTTQNAKFHAQALEKGAKIIDVNECKKLLKI-------DEKIQIIGITGTNGK 93

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYL---SS 179
           ++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K L YL   + 
Sbjct: 94  TTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--KTLEYLQIATQ 148

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK   F +   
Sbjct: 149 KKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFFTD--- 205

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGK 298
            ES   I  D    K  ++ A   G    ++ YQ K   L++ + AI   +  T  ++  
Sbjct: 206 -ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTNKNQTFHIDS- 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHVVPGRFEFVGT 351
                 PL G F +YN LVA+ +C+     + LV   L+ LEK       V GR E V  
Sbjct: 263 ------PLLGLFNLYNLLVAS-VCV-----NELVKPDLKDLEKAISGFGGVCGRVEQV-- 308

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+MGKI    A 
Sbjct: 309 -AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAK 362

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+    D++V+ G
Sbjct: 363 IAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKRALELKENDDLVVILG 420

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG ET   +  G K    D  ++ EIL
Sbjct: 421 KGDETTQEI-KGIKYPFSDKVVVNEIL 446


>gi|154148328|ref|YP_001405805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
 gi|153804337|gb|ABS51344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
          Length = 429

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 218/476 (45%), Gaps = 75/476 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ +S   Q G  F+ I  N +    F   A+  GA+ I +  A  + + +  I+     
Sbjct: 10  ITDNSNECQNGAYFMQIDANMK----FADSALKNGAKIISIDEAKKMLNINKNIK----- 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                                   I+ +TGT+GK++ A+ +       G   F+ G + T
Sbjct: 61  ------------------------IVGITGTNGKTTTAAAIYSTLLDLG---FKCGLSGT 93

Query: 153 ISSFAQDNRLT----TPSPIYLAKALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             +F  D R+     T S ++  K + YL   S +      +E SSH + Q+R+ G+   
Sbjct: 94  RGAFINDCRIDEKGLTTSSVF--KTIGYLYEASKEDCEFFIMEVSSHAIAQNRIQGLNFA 151

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIYADDAYSKEVMKRAH 261
              FTNL +DH+DYH+T + Y   K   F++    L+ K++  I Y +       +K+  
Sbjct: 152 LKIFTNLTQDHLDYHKTMEEYARVKSSFFKDDTPKLINKDAGGITYNETNARTYALKQI- 210

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AG 320
            A   VL+   +G       + A+       I +E        PL GEF +YN + A A 
Sbjct: 211 -ATYSVLAYSVKGA------IDALLRTPDGEIQIES-------PLVGEFNLYNLMAAFAA 256

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + I    D+  + E L     V GR + V   SR   + VD+AHT + +E +L  ++   
Sbjct: 257 VKILTNYDNKKIAEALANFGGVEGRVQIV---SRNPYVVVDFAHTPDGIEKVLNALK--- 310

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437
              +I VFG GGDRD+ KRP MG I    A  AI+T DNPRSEDP  I  EI  G+    
Sbjct: 311 DHELIAVFGAGGDRDKTKRPKMGAIVEHFAKTAIITSDNPRSEDPNVIIDEIESGMREKN 370

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             I+  NR EAI+ AI +    +++V+ GKG ET   +  G K    D + + EIL
Sbjct: 371 KIIKIENRAEAIKKAISLAKNGEMVVILGKGDETYQEI-KGVKHHFNDKECVLEIL 425


>gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces coelicolor A3(2)]
 gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces coelicolor A3(2)]
          Length = 506

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 231/477 (48%), Gaps = 35/477 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL +QL +        +I  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A++
Sbjct: 19  ELADQLGVAAPDG-SAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVL 77

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130
              A + +  +A +    P LVVD+ R  +   A+ +YG    ++L   +TGTSGK++ A
Sbjct: 78  TDPAGAERAAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTA 133

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186
             V+    R+  S+  IG   T+     D R+    TTP    L    + +  +G   V+
Sbjct: 134 YLVEGGL-RTAKSTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVA 189

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AI 245
           +E SSH L   R+D        FTNL  +H+++H   + YF AK +LF    PK S   +
Sbjct: 190 MEVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLF---TPKRSRLGV 246

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304
           +  DD Y + + K A        + G+        +V     +     +  +G+      
Sbjct: 247 VNVDDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKS 306

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDY 362
           PL G F V N L A     A G+D     + +  +  VPGR E V     G   +  VDY
Sbjct: 307 PLAGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV---DEGQPFFAVVDY 363

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH ++++E +L+ +R +T G++  V GCGGDRD  KR  MG      AD A++T DNPRS
Sbjct: 364 AHKTDAVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRS 423

Query: 423 EDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           EDP  I A ++ G   +P   E+G      +R  AI  A+      D ++VAGKGHE
Sbjct: 424 EDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHE 479


>gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
 gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
          Length = 767

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 241/503 (47%), Gaps = 46/503 (9%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      + +I  +  DSR + AG +FV  VG++     F+ +A  +GA 
Sbjct: 245 ELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCVGSES----FLSEADKRGAV 300

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V S    ++D          +++V++T   L+  AS  Y +HP   ++V G +G    
Sbjct: 301 AVVASKEIDIEDTLGC----KALVIVEDTNAVLAALASSFY-RHPSKNMSVIGVTGTDGK 355

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL------TTPSPIYLAKALSYLSSQGV 182
            +    I         + G  ST+S +   DN+L      T P  + +   ++ +   G 
Sbjct: 356 TTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATTNPDAVLVQSLMAKMLHNGT 415

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKE 241
             + +EAS   L   + D +      FTNL R++ D+  T + Y +A+ +LF  ++ P  
Sbjct: 416 EALVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFARMVDPGR 475

Query: 242 SPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              ++  DD  +   +++ + N      ++      +H         + QV ++      
Sbjct: 476 HRKVVNIDDPNATFFVQQGNPNVPVVTFAMENTKADVHPLMFELSLFETQVLVNTPQGIL 535

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G + V
Sbjct: 536 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG-VIV 594

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+A+T + L  +L +IR +   RII V GC G+ ++GKRP+M KIA + +D+ ++T DNP
Sbjct: 595 DHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNP 654

Query: 421 RSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNK 458
           R+EDP  I  +++ GI   +++               G+R+        A+R A+ M  +
Sbjct: 655 RNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEE 714

Query: 459 QDVLVVAGKGHETVHIVTNGEKK 481
            D++VVAGKGHE   +   GEKK
Sbjct: 715 GDMVVVAGKGHEAYQL--EGEKK 735


>gi|329940947|ref|ZP_08290227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300241|gb|EGG44139.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 506

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 233/483 (48%), Gaps = 47/483 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL  QL +   +  E  +  ++ DSR ++ G ++ A+ G +  G  F+ QA         
Sbjct: 19  ELAGQLGVAAPET-EAGVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGL------ 71

Query: 73  VSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKS 127
             +A  L D S   R   +  P+LV +N R  +   A+ +YG+    +L +  TGTSGK+
Sbjct: 72  -GAAAVLTDPSGAERAAATGLPVLVAENPRAGMGELAATIYGRPGRELLGIGITGTSGKT 130

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183
           + A  V+    R+  S+  IG   T+     D R+    TTP    L    + +  +GV 
Sbjct: 131 TTAYLVEGGL-RTAKSTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVE 186

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SSH L   R+DG       FTNL  +H+++H   + YF AK +LF     +   
Sbjct: 187 AVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPA--RSRL 244

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKD--- 299
            ++  DD Y + +   A  A   V++   +G      +   +       T +V G D   
Sbjct: 245 GVVNTDDEYGRRL---AAQATVPVVTYSAEGHPDADWRAEDVEVGPLDSTFTVLGPDGVR 301

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G F V N L A     A G+D     + +  +  VPGR E V      G+ Y
Sbjct: 302 VTARSPLAGPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERV----DAGQPY 357

Query: 360 ---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              VDYAH ++++E +LK +R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T
Sbjct: 358 FAVVDYAHKTDAVESVLKALRKVTKGRLHIVLGCGGDRDTTKRMPMGAAAARLADTAVLT 417

Query: 417 DDNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGK 467
            DNPRSEDP  I A ++ G   +P   E+G      +R  AI  A+      D ++VAGK
Sbjct: 418 SDNPRSEDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARARPGDTVLVAGK 476

Query: 468 GHE 470
           GHE
Sbjct: 477 GHE 479


>gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
 gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
          Length = 495

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 139/485 (28%), Positives = 229/485 (47%), Gaps = 35/485 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ ++ DSR ++   +F  I G   DGH F   A  +GA A V S +   Q        +
Sbjct: 24  IDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKEKGAVAFVASKSIKNQ------VGD 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           TP++ V +  + ++L A+  YG   +++  + VTGT+GK++V   +  + ++    +  I
Sbjct: 78  TPVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGTNGKTTVTHMIDALLEKPNKPTALI 137

Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I         TTP  + L +    L   G     +E SSH L   R+ G+    
Sbjct: 138 GTIYRKIGPKIIQTHNTTPEILTLHETFQELKEIGGETCLMEVSSHALQLGRVWGLDYDC 197

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVMKRA 260
             FTNL  +H+D H+T + Y +AK  LF +L        K   A++ ADD   ++     
Sbjct: 198 VVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVGENSKPKVAVLNADD---EQFQMFE 254

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVA 318
           ++   +V+S G   +     +     N   +   V   D  +L   PL G F VYN L A
Sbjct: 255 YSTPVQVISYGINEEADFKAENIRTENGHTIFELVIQNDERYLVDMPLLGIFNVYNMLSA 314

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +    GI    +L+ ++    V GR + V    +  ++ VD+AHT + LE +L ++  
Sbjct: 315 IAVAYVYGISIEEILKKVKAFQGVAGRMQSV-DKGQDFQVIVDFAHTPDGLENVLDSLAQ 373

Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           I  G+II V G  GG+RD   RP +G+IAL  +D  + T DNPR+E        I  G+ 
Sbjct: 374 IPHGKIITVVGHSGGNRDSSMRPELGRIALTKSDHVVFTADNPRTEP----LVNIYEGLL 429

Query: 438 GFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             + K +        R EAI  A+++ +  D++++AGKG E   I+   E   + + +++
Sbjct: 430 SAVNKKSVSYECIDKREEAIEKALQLASAGDIVLLAGKGVEAYQIIGEVEYPYN-EIEVV 488

Query: 490 REILG 494
             +LG
Sbjct: 489 ESLLG 493


>gi|257459226|ref|ZP_05624345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis
           RM3268]
 gi|257443611|gb|EEV18735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis
           RM3268]
          Length = 436

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 140/478 (29%), Positives = 220/478 (46%), Gaps = 77/478 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ +S   +AG  F+    N +    F P+A  +GA+ I +  A  L    + I+     
Sbjct: 10  ITDNSAECEAGCFFMRTSANAK----FEPEAAQKGAQIISIVQAKELLKIDSRIK----- 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                                   I+ +TGT+GK++ A+ +       G   F  G + T
Sbjct: 61  ------------------------IVGITGTNGKTTTAAAIYSTLLDLG---FSCGLSGT 93

Query: 153 ISSFAQDNRLT----TPSPIYLAKALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             +F  + R+     T S ++  K +SYL     QG  +  +E SSH + Q+R++G++  
Sbjct: 94  RGAFINERRIDEKGLTTSSVF--KTMSYLYEAGKQGCEYFVMEVSSHAIAQNRIEGLEFA 151

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH + Q Y   K   F +    ++P +I ADD + K     A   G 
Sbjct: 152 LKIFTNLSQDHLDYHGSMQEYAAVKSSFFAD----DAPKLINADDGHIKFDPANALTYGI 207

Query: 266 R------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA- 318
           +      V   G +G    L +     N Q  +             L GEF +YN   A 
Sbjct: 208 KNAASFGVSGYGLKGGIDALVRTPNGDNAQLQS------------DLIGEFNLYNLTAAF 255

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A + I   + +  + + L     V GR + V  +     + VD+AHT + +E +L  +R 
Sbjct: 256 AAVKILTKLPNEKIAKALANFGGVEGRVQIVNKDPL---VIVDFAHTPDGIEKVLNALRA 312

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
             SG II VFG GGDRD GKRP MG IA   A I IVT DNPRSE+P++I  +I  G+  
Sbjct: 313 --SGEIIAVFGAGGDRDHGKRPKMGAIAEHFAKICIVTSDNPRSENPDEIIEQICAGMRR 370

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               ++  +R EAI  A+++    +++ + GKG ET   +  G K    D  ++ E++
Sbjct: 371 KDKILKITDRKEAIARALDLAKNGEMIAILGKGDETYQEI-KGVKHPFSDKQVVSELV 427


>gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi JD1]
          Length = 508

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  +V S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I  ID   +++ L  +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+  +I  +
Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMRIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|57238652|ref|YP_179783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni RM1221]
 gi|57167456|gb|AAW36235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni RM1221]
          Length = 427

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 207/397 (52%), Gaps = 54/397 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  A
Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 175

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++ + AI   
Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 230

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341
           +  T  ++        PL G F +YN LVA+  C+     + LV   L+ LEK       
Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGG 277

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+
Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456
           MGKI    A IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+ 
Sbjct: 330 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKKALELK 387

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 388 ENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423


>gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi 80a]
          Length = 508

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  +V S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I  ID   +++ L  +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+  +I  +
Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMRIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENKDLFFIADRRQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
 gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
          Length = 508

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 224/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  +V S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      N  +     +G  +     L G F V
Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----NSTRFEFYHKGVKYLANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I  ID   +++ L  +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +
Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
 gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
          Length = 508

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 138/469 (29%), Positives = 223/469 (47%), Gaps = 36/469 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S    L  +S+ +   T I
Sbjct: 31  VTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNVIVCSR--DLDFYSSDV---TYI 85

Query: 93  LVVD-NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            V D N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+   ++G 
Sbjct: 86  KVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGV---KVGF 142

Query: 150 TSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLD 200
            ST+       S      R +TP    +   L  +    V +  +E++SHGLD    RL 
Sbjct: 143 ISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLCNMVKNEVQYAILESTSHGLDLETARLI 202

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---KEVM 257
            +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS   K  +
Sbjct: 203 DVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFGVINLDDFYSSDFKNAV 262

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K++     +     +   FI  K      +  +     +G  +     L G F V N + 
Sbjct: 263 KKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYFANVNLLGSFNVENVMA 317

Query: 318 AAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           A  L   I  ID   +++ L  +  + GR + +    +   + +DYAHT  +   +    
Sbjct: 318 ALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSKLFPIF 376

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +I  GI
Sbjct: 377 KRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKDIAKGI 436

Query: 437 PGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
              +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 437 VNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 508

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 224/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVIVCSRDV---DFYSP--- 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I  ID   +++ L  +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +
Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|260588058|ref|ZP_05853971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
 gi|260541585|gb|EEX22154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
          Length = 497

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 147/501 (29%), Positives = 244/501 (48%), Gaps = 35/501 (6%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L+ +L    +Q   +++I  ++ DSR  + G +F  I G   DGH +      +G
Sbjct: 9   KKLADLLEKLEYQCLQGTMDKEITNITFDSRKAEKGCLFFCIKGAVSDGHAYAKDVAEKG 68

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++V      QD    +     ++ V+N+R  ++  ++  +G HP   L   G +G  
Sbjct: 69  AAVLIV------QD-KVEVPEEVTVIQVENSRYAMACISAAWFG-HPAEKLKTIGITGTK 120

Query: 128 SVAS---FVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVT 183
              +    V+ I + +G  +  IG   TI    +  +  TTP    + K  + +   G  
Sbjct: 121 GKTTTTYLVKSILENAGHKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCD 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241
            V +E SS GL  HR  G +   G FTN+  DHI  + H+    Y + K  LF++     
Sbjct: 181 SVVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGPNEHKDFADYLHCKALLFKQC---- 236

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK-- 298
              I  AD  +  E+++  H   C+V + G+  K  +  +    +  K  + I+ + K  
Sbjct: 237 KVGIFNADADHLDEILE-GHT--CQVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGL 293

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +F     LPG F VYN+L A  +C   G+    + + L++  V  GR E V  +     
Sbjct: 294 MNFPVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKV-KGRIEMVKVSDEF-T 351

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T 
Sbjct: 352 LMIDYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTIITS 411

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR E+P++I  +I  GI      ++E  +R EAI  AI      D++V+AGKGHE   
Sbjct: 412 DNPRDEEPQEIIDDIKIGIGKTNGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKGHEDYQ 471

Query: 474 IVTNGEKKMSVDCDI-IREIL 493
            +    KK  +D  + I+EIL
Sbjct: 472 EIKG--KKYPMDERVLIQEIL 490


>gi|315059091|gb|ADT73420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 404

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 207/397 (52%), Gaps = 54/397 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 38  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 92

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  A
Sbjct: 93  TLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 152

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++ + AI   
Sbjct: 153 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 207

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341
           +  T  ++        PL G F +YN LVA+  C+     + LV   L+ LEK       
Sbjct: 208 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGG 254

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+
Sbjct: 255 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 306

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456
           MGKI    A IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+ 
Sbjct: 307 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKKALELK 364

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 365 ENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 400


>gi|220912334|ref|YP_002487643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
 gi|219859212|gb|ACL39554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
          Length = 545

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 233/474 (49%), Gaps = 34/474 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    +  +  ++ +SR ++AG ++VA+ G    G  F+ QA+  GA A++   A + + 
Sbjct: 44  PGHAADVTVTGITLNSRSVEAGDLYVALPGASRHGADFVAQAVGAGAVAVLTDDAGA-RL 102

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQI 136
            +    +  P+LVVD  R  +   ++ +YG     +    +  VTGT+GK++   F+  +
Sbjct: 103 LALGNDTPVPVLVVDKPRNVVGPLSAAIYGSTDGAEDDFTLFGVTGTNGKTTTTYFINSL 162

Query: 137 CQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  S  IG    ++      + LTTP    +   L+ +  +G+   ++E SSH + 
Sbjct: 163 LRALGTRSGLIGTIEILAGTEPIPSLLTTPESTEVHGLLALMRERGLGAAAMEVSSHAIS 222

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+DG+      FTNL +DH+D H T   YF  K  LF     +   A++  DD + + 
Sbjct: 223 YQRVDGVLFDVAGFTNLTQDHLDLHGTMDDYFATKAELFTPARARR--AVVTVDDEWGRR 280

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI----SVEGKDFDFLFPLPGEFQ 311
           +   A  AG  V ++   G+      V     +   T       +G +      LPG F 
Sbjct: 281 L---AGTAGIPVTTLSTDGQAAADWAVATTEPRGLGTAFTLKGPDGAELRLHTGLPGSFN 337

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           V NA +AA + +A G+D A++ E ++        VPGR + V          VD+AH ++
Sbjct: 338 VANAALAAVMVLAGGVDHAVLQEAVDTADPFTVAVPGRMQLVAEQPAA---VVDFAHNTD 394

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +L   L+ +R      R+IVVFG  G RDQGKRP MG +A  LAD  I+TDD+P  ED  
Sbjct: 395 ALARALEAVRPPAPDSRLIVVFGATGQRDQGKRPAMGAVAARLADTVIITDDDPHDEDAA 454

Query: 427 KIRAEIIHG---------IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            IRA+++ G         +P   +E   R EAIR A+E+    D ++VAG+GHE
Sbjct: 455 AIRADVLAGAEHARSSESLPCEILEVFPRDEAIRRAVELAGPSDSILVAGRGHE 508


>gi|283957027|ref|ZP_06374499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791528|gb|EFC30325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 427

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 206/395 (52%), Gaps = 50/395 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  A
Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 175

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++ + AI   
Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 230

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341
           +  T  ++        PL G F +YN LVA+  C+     + LV   L+ LEK       
Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGG 277

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+
Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNK 458
           MGKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+   
Sbjct: 330 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRKEAIKKALELKEN 389

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 390 DDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423


>gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 495

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 149/496 (30%), Positives = 235/496 (47%), Gaps = 58/496 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + +E+  ++++I    +FV I G K D H  I + + QGA+A+VV             R 
Sbjct: 22  EFSELVFNTKNIVKDCLFVCIKGAKFDAHDAIDEIVKQGAKAVVVQKDIK--------RD 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRS----- 140
           +  ++ V +TR  L+   S  Y  HP     I+ +TGT GK++ +  +Q++  ++     
Sbjct: 74  DICVIKVSDTRVALARL-SAAYFSHPAKKMKIIGITGTKGKTTSSYMLQKLLGQNAKVGL 132

Query: 141 -GLSSFQIGPT--STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            G +   IG T  ST++        TTP    L K           +V +E SS  +   
Sbjct: 133 IGTNGITIGDTHRSTLN--------TTPESYELHKTFKECLDANCEYVVMEVSSQAVMLK 184

Query: 198 RLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           R++GI    G FTN+  DHI  D H+    Y   K   F++        I+  +D ++  
Sbjct: 185 RIEGICFDIGIFTNISHDHIGPDEHKDFDEYLMYKSLFFKQC----KNTIVNIEDEHANY 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTI----------SVEGKDFD 301
           V+K + +   +  + G  G F  +K +  I NK     ++ I          SV  +  D
Sbjct: 241 VLKTSDSK--QKYTFGKGGDF-DIKNIEYISNKDFLGTRIDIKCREEIAEKYSVNNEISD 297

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PGEF VYNAL A    I  G+  A  L++  K   V GR E V   S    + +D
Sbjct: 298 IYVGIPGEFNVYNALSALSAAIICGVKEA-DLKNALKDSRVNGRME-VAYTSHDFNVVID 355

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH + S E ++  +R     R+++VFG GG+R + +R  MG+I   +AD +IVT DN R
Sbjct: 356 YAHNAISTESLIHTLRNYKPKRLVIVFGSGGNRSKDRRYSMGEICGKMADFSIVTADNSR 415

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            E  E I A+II  +      +I   +R EAI  +IE   K D++ + GKGHE    + N
Sbjct: 416 FEKTEDIIADIIEKLKPTGGEYITIPDRKEAIFYSIENAKKGDLIAIIGKGHEDYQEI-N 474

Query: 478 GEKKMSVDCDIIREIL 493
           G +   +D +++ E L
Sbjct: 475 GVRHHFLDREVVDECL 490


>gi|260905300|ref|ZP_05913622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacterium linens BL2]
          Length = 520

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 225/480 (46%), Gaps = 48/480 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER++  VS DSR +  G ++ A+ G    G  F P  + +G  AI+  +A      SA +
Sbjct: 19  EREVGGVSHDSRTVSPGQLYAALPGANVHGAKFAPDLMERGITAILTDAA-GWDMISAAV 77

Query: 87  RSNTPI----LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSS---VASFVQQIC 137
              T      L+V++ R  L   ++ +YG    P+ I         ++   V   ++ + 
Sbjct: 78  DPQTLAEVTGLIVEHPRSVLGFVSAAVYGTSVSPQLIGVTGTNGKTTTTYLVDGMLEALG 137

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            R+G+    IG  +T I+   + +  TTP    L    + + +  V   ++E SSH L Q
Sbjct: 138 HRTGV----IGTVATLIAGVREPSVRTTPEAPELHALFAKMRAADVDTCAMEVSSHALSQ 193

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+DG       FTNL +DH+D+H +   YF+ K +LF         A+I  +D + +++
Sbjct: 194 HRVDGAHFAVSGFTNLSQDHLDFHNSMDEYFDVKAQLFTRTF--SDAAVIVVEDRWGEKM 251

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++ A      V ++G   +  + ++    + +          +      PLPG+F V N 
Sbjct: 252 VEAAQ---VPVRTLGRDDRSELRIEHTPGVSDFILHLGGSADETIALRSPLPGDFNVTNT 308

Query: 316 LVAAGLCIAIGID-----------SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +AA + +  GI            SA V   +E + V   R E      R  R  VDY+H
Sbjct: 309 ALAAAMLLEAGIAVSDLNAIGRTFSASVPGRMEIIDVSGPRAEGQTHPERLPRAIVDYSH 368

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T +++E  L ++    S  +++VFG GGDRD+GKR  MG+ A   AD+ ++TDDNPR+ED
Sbjct: 369 TPDAIEKALASLHA-DSEELVIVFGAGGDRDRGKRYGMGQAAARGADVIVLTDDNPRTED 427

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-------------QDVLVVAGKGHET 471
           P  IRA I  GI   I  G     ++  IE+  +                +++AGKGHET
Sbjct: 428 PNLIRAAIREGIDAEISNGR--ARVKKVIEVAERGSAIDEAIAAAEASTTVLIAGKGHET 485


>gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
 gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
          Length = 505

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 227/476 (47%), Gaps = 42/476 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G + DGH FI  AI +G+  IV S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIRFDGHDFIEMAIQKGSNVIVCSRDL---DFYSP--- 80

Query: 89  NTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD+   RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFSIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKRGI-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-- 195
            ++G  ST+       S      R +TP    +   LS +   GV +  +E++SHGLD  
Sbjct: 139 -KVGFVSTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAVLESTSHGLDFE 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G DH+++H T + Y N K+ LF+ +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKLGLFQSVSDDAGFGVINLDDVYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAIKKSFTYSLKNSQADFFVSFIDEKT-----DSTRFEFYYKGIKYFANVNLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   +  ID   +++ L  +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSKLLNIDIQDIVDELVCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +     R+I VFG  G+RD  KR + G+I+   +D+ ++ D++PR E+   I  +
Sbjct: 372 LFPIFKRFAINRLISVFGSAGERDVAKRFLQGQISDIYSDLILLCDEDPRGENSMCIIKD 431

Query: 432 IIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI          FI   +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVVNRDLFFIP--DRRQAIEKAISLARAGDLVVALGKGHESSIIYKNRE 485


>gi|145588350|ref|YP_001154947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046756|gb|ABP33383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 516

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 157/502 (31%), Positives = 236/502 (47%), Gaps = 52/502 (10%)

Query: 32  EVSSDSRHIQAGWIFVAI-VGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +V +DSR IQ+G IF A  VG+     DG  FI  A+A GA A+V   A          +
Sbjct: 25  KVGADSRQIQSGDIFFAYPVGHGAALRDGRQFIEAALANGAAAVVFDPA----GIDPQFQ 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +     V++  + +  F ++ Y  +P     ++ VTGT+GK+S+  ++ Q        +
Sbjct: 81  DHPQCFAVESLAEKVGEFCAQWY-DYPSKQLKVIGVTGTNGKTSITQWLAQALDEPNHRT 139

Query: 145 FQIG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             +G      PT+ + +       TTP    L   L  L   G   V++E SSH L Q R
Sbjct: 140 AVLGTLGTGFPTALVMT-----GYTTPDAPKLQTQLRELLDGGAQQVAMEVSSHALHQER 194

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-M 257
           + G       FTNL +DH+DYH +   Y  AK +LF++   +   A+I  DD + +E+ +
Sbjct: 195 IAGTWFNCAVFTNLTQDHLDYHGSMGDYAEAKAKLFQQAGLEH--AVINLDDPFGRELAI 252

Query: 258 KRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQV-------TISVEGKD--FDFL 303
                   +V + G     ++G      ++  I+ +  V       T  V G    +   
Sbjct: 253 NLLAKDSIQVWAYGLAPTAFKGFEKFASRLQRIYTQDTVLSGATYQTTFVYGDKGTYPLH 312

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN--SRGGRIY 359
            PL GEF + NAL    + +  G+      + +  L  V GR E +  G N  S G    
Sbjct: 313 IPLLGEFNLSNALAVWTVLLTQGLSPEEATKRVSHLSPVSGRMELIPLGKNQKSEGLLAV 372

Query: 360 VDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           VDYAHT ++L+  L+ +R +     G++  VFGCGGDRD  KRP MG +A   AD  I+T
Sbjct: 373 VDYAHTPDALQKTLQALRPLAEQRGGKLWCVFGCGGDRDITKRPQMGLVAEKFADHIIIT 432

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETV 472
            DN RSEDP+ I   I  G+         I     AI  A+   + +D+++VAGKGHET 
Sbjct: 433 SDNSRSEDPQAIIQMIADGLNPSTTNVQMIADRAAAIMAAVRHADARDIVLVAGKGHETS 492

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             + NG+     D + IR   G
Sbjct: 493 QEI-NGKTFDFSDQEHIRLAAG 513


>gi|283953741|ref|ZP_06371272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794782|gb|EFC33520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 427

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 200/394 (50%), Gaps = 48/394 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D     +  T SPI   K
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDESIDEKTLTTSPIL--K 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+K  A  FTN+ +DH+D+H   + Y  A
Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKEA 175

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F +    ES   I      +K+ +    N  C   + G +   ++  K  ++    
Sbjct: 176 KELFFTD----ESLKFI------NKDALAIKFNV-CNAFTYGIENPALYQIKAYSLEEGI 224

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-------V 342
                 + + F    PL G F +YN L+AA  C+     + L   +L+ L         V
Sbjct: 225 SAIAKNKDQTFHIDSPLLGLFNLYN-LLAASACV-----NELAKPNLKDLEKAISGFGGV 278

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP+M
Sbjct: 279 CGRVEQV---AKG--VIVDFAHTPDGIEKVL---NTLKNKKLIVVFGAGGDRDKTKRPLM 330

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQ 459
           GKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+  K 
Sbjct: 331 GKIVEHFAKIAIITSDNPRSEEPKTIMEEILLGFKKKEKVLTIEDRKEAIKKALELKEKD 390

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D++V+ GKG ET   +  G K    D  +I EIL
Sbjct: 391 DLVVILGKGDETTQEI-KGVKYPFSDKVVINEIL 423


>gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
 gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
          Length = 506

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 143/470 (30%), Positives = 219/470 (46%), Gaps = 42/470 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  ++ DSR + + ++F A+ G   DG  FI  AI QG+  IV ++  +  D     
Sbjct: 28  EVEILGLTYDSRCVLSHFVFFALPGLHFDGQEFINSAIEQGSNVIVHTNDINFYD----- 82

Query: 87  RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
             N   + +D  N +KF+S FA   Y +  +N  I+ VTGT GKSSV  ++  + +  G+
Sbjct: 83  -PNVTYIKIDSCNIKKFMSNFAHIFYNEPSKNLKIIGVTGTDGKSSVCFYIYTLLKSMGV 141

Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              ++G  ST+  F +D          R +TP    +   LS +    V +  VE++SHG
Sbjct: 142 ---KVGFISTV--FFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVESTSHG 196

Query: 194 LD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           LD    RL  I       TN+  +H+++H T Q Y NAK+ LF          II  DD 
Sbjct: 197 LDIRTSRLIDIAYFVAVLTNVSHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIINMDDK 256

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                +   + A    L       F+   K+       +     +   +D    L G F 
Sbjct: 257 NFSTFLNTINRAYTYSLENKNADFFV--SKINEQMGFTEFEFYHKNVKYDARVNLTGSFN 314

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTN-SRGGRIYVDYAHTSNSL 369
           V N  V A L +   + +  V E ++KL  + G F    G +  +   + +DYAHT  + 
Sbjct: 315 VEN--VMAALIVVSQVMNVDVSELIDKLVNIEGLFGRMQGVDFGQDFSLIIDYAHTPGAF 372

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             I    + ++  R+I VFG  G+RD  KR + G+IA   +DI I+ D++PR ED  +I 
Sbjct: 373 LKIFPIFKRLSKNRLISVFGSAGERDVLKRKLQGEIADRYSDIIILCDEDPRGEDSMQII 432

Query: 430 AEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +I  GI G        FI   +R  AI  AI + +  D++V  GKGHE 
Sbjct: 433 RDIAEGISGKTLNRDLFFIP--DRKSAIEKAINIAHTDDLVVTLGKGHEN 480


>gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 498

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/465 (29%), Positives = 223/465 (47%), Gaps = 23/465 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N +S DSR +  G +FVAI G   DGH +I + I QGA A+V++S Y  ++++     N
Sbjct: 23  VNNISQDSRKVGEGDVFVAIKGYTVDGHNYIEKVIEQGA-ALVIASRY--ENYNV---EN 76

Query: 90  TPILVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++V+      K  S+ A ++      + +AVTGT+GK+S+++ V  + +  G SS  I
Sbjct: 77  CAVIVIKEHEIEKVASMIAKKINEGSNVHTVAVTGTNGKTSISTLVHNMLRTLGESSAYI 136

Query: 148 GPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           G      + A+      TTP  + L   +  L    + +++ EASSH +   R+  + + 
Sbjct: 137 GTNGFGKNDAEPVYFGNTTPDVVTLHNQIGELRRDNIKNLAFEASSHAMALGRIYNVDID 196

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHN 262
              FTNL  +H+D+H   Q Y   K  LF  L   L +    ++  DD+Y K + K  + 
Sbjct: 197 VAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKYGVLNKDDSYYKVISKCLYQ 256

Query: 263 AGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                  V     F    I   K   ++       S EG  F+      G+F V N L A
Sbjct: 257 QEINYSIVDNTADFYAYNIKQYKEDKVYKTSFTLNSPEGT-FECTTNYIGDFMVSNVLAA 315

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                  G     ++  L KL  + GR E +G +     I  D+AHT +  E +L+  R 
Sbjct: 316 LIAVWVKGYSVEQLVAILPKLGALYGRMEIIG-DDLPIDIISDFAHTPDGYEKLLEATRE 374

Query: 379 ITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
           +  G R ++V G GG RD  K P++G I +  AD  ++T D+PR ED E +   I  G+ 
Sbjct: 375 MRKGKRTLLVTGMGGGRDISKGPLIGDI-ISEADYVVITTDSPRDEDVEVLMGSIEKGMT 433

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
              + +   R +A++  IE+    DV+++A KG E   I+  G+K
Sbjct: 434 HKNYEKVWFRTDAVKRIIELSEPGDVVILASKGREDYEILQGGKK 478


>gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 538

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 148/484 (30%), Positives = 224/484 (46%), Gaps = 41/484 (8%)

Query: 13  ELINQLSI----FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           EL +QL +     P    E  +  ++ DSR ++ G ++ A+ G +  G  F     A   
Sbjct: 19  ELADQLGVDASGVPA---EAAVTGITHDSRAVRPGDVYAALSGARLHGADFA-AQAADLG 74

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGK 126
            A V++     +  +AT     P+LVVDN R  +   A+ +Y +   ++L   +TGTSGK
Sbjct: 75  AAAVLTDPDGAERAAAT---GLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGK 131

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRL----TTPSPIYLAKALSYLSS 179
           ++ A  V     R+       GPT  I +      D R+    TTP    L    + +  
Sbjct: 132 TTTAYLVDGGL-RAAAEKAAGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRE 190

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + V  V +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF +   
Sbjct: 191 RDVHSVVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKA-- 248

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGK 298
           +    +I  DD Y + +++ +        + G+         V           I   G+
Sbjct: 249 RSRAGVINYDDEYGRRLIEESEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAIGPNGE 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P+ G F V NAL A       GID     + +  +  VPGR E V      G+ 
Sbjct: 309 TVRAAAPIAGPFNVANALAALVALAVAGIDPQTAADGIGAVPGVPGRLERVDV----GQP 364

Query: 359 Y---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           Y   VDYAH ++++E +L+ +R +T G++  V GCGGDRD+ KR  MG      AD A++
Sbjct: 365 YLAVVDYAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGSAVARYADTAVL 424

Query: 416 TDDNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAG 466
           T DNPRSEDP  I A ++ G   +P   E+G      +R  AI  A+      D ++VAG
Sbjct: 425 TSDNPRSEDPLAILAAMLAGAAEVPSH-ERGDVLVEEDRENAIAAAVARAEPGDTVIVAG 483

Query: 467 KGHE 470
           KGHE
Sbjct: 484 KGHE 487


>gi|218563230|ref|YP_002345010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|9297095|sp|O69290|MURE_CAMJE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112360937|emb|CAL35738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926835|gb|ADC29187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315929485|gb|EFV08681.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 427

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 141/398 (35%), Positives = 206/398 (51%), Gaps = 56/398 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  A
Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 175

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHN 287
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++  +  + N
Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISTIVTN 230

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LH 340
           K Q         F    PL G F +YN LVA+  C+     + LV   L+ LEK      
Sbjct: 231 KNQT--------FHIDSPLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFG 276

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP
Sbjct: 277 GVCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRP 328

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEM 455
           +MGKI    A IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+
Sbjct: 329 LMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKKALEL 386

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 387 KENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423


>gi|86149341|ref|ZP_01067572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596407|ref|ZP_01099644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|85840123|gb|EAQ57381.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191248|gb|EAQ95220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315927609|gb|EFV06940.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 404

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 141/398 (35%), Positives = 206/398 (51%), Gaps = 56/398 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 38  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 92

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  A
Sbjct: 93  TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 152

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHN 287
           K   F +    ES   I  D    K  ++ A   G    ++ YQ K   L++  +  + N
Sbjct: 153 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISTIVTN 207

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LH 340
           K Q         F    PL G F +YN LVA+  C+     + LV   L+ LEK      
Sbjct: 208 KNQT--------FHIDSPLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFG 253

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ KRP
Sbjct: 254 GVCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRP 305

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEM 455
           +MGKI    A IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+
Sbjct: 306 LMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKKALEL 363

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 364 KENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 400


>gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
 gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
          Length = 496

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 234/483 (48%), Gaps = 47/483 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +++++    +FV I G   D H  I + +  GA+A+VV             R +  ++ V
Sbjct: 29  NTKNVVKDCLFVCIKGRNFDTHDVIDEIVKLGAKAVVVERNIK--------RDDICVIKV 80

Query: 96  DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           D+TR  L+  ++  +G HP     I+ +TGT GK++ +  ++++ +++      IG    
Sbjct: 81  DSTRAALARLSAAYFG-HPAKKMKIIGITGTKGKTTSSYMLKKLLEQNAKVGL-IGTNGI 138

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T+    +    TTP    L K        G  +V +E SS  +   R++GIK   G FTN
Sbjct: 139 TVGDIHRSTLNTTPESYELQKTFKECLDAGCEYVVMEVSSQAVMLKRIEGIKFYIGIFTN 198

Query: 212 LGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +  DHI  D H+    Y   K   F++        ++ ADD +S  +++++ +       
Sbjct: 199 ISPDHIGPDEHKDFTEYLMYKSLFFKQC----EKTVVNADDEHSAYILEQSTSD--EKYE 252

Query: 270 VGYQGKFI-----HLKK----------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            G  G F+     ++ K           C+ + K +  +S  G   D L  +PGEF VYN
Sbjct: 253 FGKCGDFVINNINYISKKDFLGTSFCISCSKNVKDKYRVSEVG---DILVGIPGEFNVYN 309

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A    I   +  A++   L+ + V  GR E V  +S   +I +DYAH + S E ++K
Sbjct: 310 ALSALSAAIICRVKPAVLQTALKDIKV-NGRME-VAYSSHDIKIIIDYAHNAISTESLIK 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R     R++VVFG GG+R + +R  MG+I   +AD ++VT DN R E  E I A+I+ 
Sbjct: 368 TLRRYEPKRLVVVFGSGGNRSKDRRYSMGEICGKMADFSVVTADNSRYEKTEDIIADIVE 427

Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            +      +I   +R EAI  A+E     D++ + GKGHE    + +G +   +D +++ 
Sbjct: 428 KLSETGGKYITVPDRKEAIFYAMENSKPGDIIAIIGKGHEDYQEI-DGVRHHFLDREVVE 486

Query: 491 EIL 493
           E L
Sbjct: 487 ECL 489


>gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi N40]
          Length = 508

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/469 (29%), Positives = 223/469 (47%), Gaps = 36/469 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S    L  +S+ +   T I
Sbjct: 31  VTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNVIVCSR--DLDFYSSDV---TYI 85

Query: 93  LVVD-NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            V D N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+   ++G 
Sbjct: 86  KVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV---KVGF 142

Query: 150 TSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLD 200
            ST+       S      R +TP    +   LS +      +  +E++SHGLD    RL 
Sbjct: 143 ISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLETARLI 202

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---KEVM 257
            +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS   K  +
Sbjct: 203 DVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSDFKNAV 262

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K++     +     +   FI  K      +  +     +G  +     L G F V N + 
Sbjct: 263 KKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNVENVMA 317

Query: 318 AAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           A  L   I  ID   +++ L  +  + GR + +    +   + +DYAHT  +   +    
Sbjct: 318 ALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSKLFPIF 376

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +I  GI
Sbjct: 377 KRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKDIAKGI 436

Query: 437 PGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
              +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 437 VNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|229828741|ref|ZP_04454810.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
 gi|229793335|gb|EEP29449.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
          Length = 511

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 153/501 (30%), Positives = 233/501 (46%), Gaps = 67/501 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +R+I  VS DSR +  G +F+    G +ED   F+  A  +GA   +    Y   D    
Sbjct: 34  QREITLVSCDSRKVIPGTLFICKGAGFRED---FLRMAKERGAAFYLSEKPYEGVDL--- 87

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC-----Q 138
                P + V + R  ++  AS  Y +  E   ++ +TGT GKS+ A F++ I       
Sbjct: 88  -----PWIGVSDIRAAMAHSASFCYDRPWEAFRLVGITGTKGKSTTAFFLKAIFDVYEKS 142

Query: 139 RSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           R G  S   G  STI       ++ +R+TTP PI L +  +     G+ +V++E SS  L
Sbjct: 143 RGGRPS---GLISTILTEDGKESRPSRMTTPEPIELEEHFANAREAGLDYVTMEVSSQAL 199

Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              R+  ++    +F N+G DHI    H T + YF +K+R+F +       A+++    +
Sbjct: 200 KYDRVLDVQFDVAAFLNIGYDHISPIEHPTWEDYFASKLRIFSQC----RTAVVHLGVDH 255

Query: 253 SKEVMKRAHNA---------GCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           S+E++  A  A           R    GY    QG+  H K              V G++
Sbjct: 256 SEEMLAAAQKARKVITFSETDERADVYGYGMKKQGRETHFKA------------RVLGQE 303

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +++  +PG F V NAL A  +    GI    V E L++   VPGR E     S  G+I 
Sbjct: 304 REYILGIPGFFNVSNALAAIAVAEHYGIPYDCVKEGLKRAR-VPGRME--EYTSADGKIV 360

Query: 360 --VDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             +DYAH   S E +    +    G RI+ +FG  G +   +R  +G++A   AD   +T
Sbjct: 361 TIIDYAHNRLSFEKLFAAAKEEFPGRRIVALFGASGGKAINRRRDLGEVAAANADYIYLT 420

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +D+P  EDP +I  EI   I  F        +R EAIRTAI    +  +L++AGKGHE +
Sbjct: 421 EDDPGREDPTRIAEEIASYIKPFGTPYEIIPDRKEAIRTAIHAAKEPTLLLLAGKGHEVM 480

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
               NG +K   D D  R+ L
Sbjct: 481 VRRANGYEKGPSDADCARKYL 501


>gi|319791663|ref|YP_004153303.1| UDP-N-acetylmuramyL-tripeptide synthetase [Variovorax paradoxus
           EPS]
 gi|315594126|gb|ADU35192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           EPS]
          Length = 517

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 147/501 (29%), Positives = 217/501 (43%), Gaps = 82/501 (16%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----------QGAEAIVVSS 75
           +ER    + +DSR + AG  F+A  G   DG   +  A+A          +G +A     
Sbjct: 15  KERVQGALHADSRPVGAGDGFIAWPGAATDGRKHVAAALAQGAAACLVEHEGVDAFGFGE 74

Query: 76  AYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
              +  +     +  PI     DN    L             ++LAVTGT+GK+S A ++
Sbjct: 75  DDRIASYPGLKAATGPIASAFYDNPSALL-------------DVLAVTGTNGKTSTAWWL 121

Query: 134 QQICQ--RSGLSSFQIGPTSTISSFAQD------------------NRLTTPSPIYLAKA 173
            +     R+      + P  T    A                      LTTP P+ +   
Sbjct: 122 AESLSTLRAAGGVRAMRPDGTTERSAPSPCAVMGTLGIGVPPDLTYTGLTTPDPVMMQGE 181

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  L  +G    ++EASS G+ + RLDG ++    FTN  +DH+DYH +  AY+ AK  L
Sbjct: 182 LRALVERGFGACAIEASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWEAKAEL 241

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQ- 289
           F    P    A+I  DD +   +     +AG     V +V   GK   L      ++ Q 
Sbjct: 242 FR--WPGLRAAVINIDDMHGASLCANLVDAGIGALDVWTVSAGGKPARLVARDIGYDAQG 299

Query: 290 -------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  Q ++SVE      +    G++ V N L   G   A+G+  +  +     L  V
Sbjct: 300 LQFSVTEQGSVSVERLSTGLI----GQYNVANLLGVLGTLRALGLSLSRAVAACANLTSV 355

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKR 399
           PGR E V          VDYAHT ++L+  L  +R +     G +  +FGCGGDRD  KR
Sbjct: 356 PGRMERVSVGGNAPLAVVDYAHTPDALDKALAGLRPLAQQRGGALWCLFGCGGDRDPIKR 415

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-------- 451
           P+M  +A   AD  IVT DNPRSE P+ I ++++ G        +R +A +         
Sbjct: 416 PMMAAVAERQADHVIVTSDNPRSEKPDAIISQVLRGF-------SRSDAAQVQPDRAAAI 468

Query: 452 --AIEMLNKQDVLVVAGKGHE 470
             AI     QDV+++AGKGHE
Sbjct: 469 ADAIAQAAPQDVVLIAGKGHE 489


>gi|163815239|ref|ZP_02206616.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
 gi|158449434|gb|EDP26429.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
          Length = 540

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 147/518 (28%), Positives = 236/518 (45%), Gaps = 63/518 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-------AYSLQDF 82
           I ++  DSR +    +FV   G   +G  +I  AI++GA  I+++         Y     
Sbjct: 23  ICDIVDDSRQVSPNAVFVCRRGAVTNGRKYIGDAISRGAAGIIITDEVWDSEDVYDADSM 82

Query: 83  SATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQI 136
           S ++     +  ++V+ + R  +    +  +G +P   L V G +G     +    ++++
Sbjct: 83  SGSLGYYPDDFFVVVMHDKRYSIGRLCNNFWG-YPSRELTVIGVTGTKGKTTVTYMMKKV 141

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  +  IG        +Q   + TTP  + L + L  + S G     +E SS G+ 
Sbjct: 142 LETCGCKTGLIGTIEVDDCSSQVQSVNTTPGVVQLHRILHNMVSNGARCCVMEVSSQGIM 201

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             R+ G+    G FTN+  DHI  + H+T + Y   K  +F         A+I  DD Y+
Sbjct: 202 LGRVSGVDFDIGIFTNISPDHIGKNEHKTFEEYIRWKSTMFSMC----RYAVINMDDVYA 257

Query: 254 KEVMKRAHNAGCRVLS--VGYQGKFIHLKKVC--------------AIHNKQQVTISVEG 297
             +       G +  S  +GY G  I  K++               +++   Q+ ++  G
Sbjct: 258 PCICNGIQVNGAKKCSGVIGY-GMNIWSKELYDKISEHMPVYDIHFSLYIGDQLAMAYNG 316

Query: 298 ----KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                + + + P          +PG F VYNAL        +G   + V + LE +  V 
Sbjct: 317 ITPGTECECVMPDGDRVPIHIDMPGLFNVYNALAVIAAGDVLGFPRSTVSKALEDI-CVR 375

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E      RG  +Y+DYAH   SLE +LK +R+   G+I  VFGCGG+R + +R  MG
Sbjct: 376 GRMECAAV-YRGAYVYIDYAHNPVSLENVLKTLRSYFGGKIFCVFGCGGNRAKSRRIGMG 434

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ 459
            ++  +AD+ IVT+DNPR EDPE I  +I  G+      +I   +R +AIR  I      
Sbjct: 435 MVSGKMADLTIVTNDNPRFEDPEAIMDDIEDGLNAAGAEYIRIPDRKKAIRYGIVHAVAG 494

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           DV+++AGKGHET   V      M       RE++G IL
Sbjct: 495 DVVLLAGKGHETYQDVMGHRTHMDE-----RELIGQIL 527


>gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
 gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
          Length = 508

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  +V S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYS---P 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAIKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I   D   +++ L+ +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +  T+ R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +
Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
 gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
          Length = 508

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 224/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  +V S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I  ID   +++ L  +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +
Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
          Length = 508

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  +V S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAIKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I   D   +++ L+ +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +  T+ R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +
Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
 gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
          Length = 508

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  +V S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I   D   +++ L+ +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +  T+ R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +
Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
 gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
          Length = 498

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 146/487 (29%), Positives = 235/487 (48%), Gaps = 32/487 (6%)

Query: 13  ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           E+IN + I  +  +  + +N +S DSR I  G +FVAI G   DGH +I + I QGA A+
Sbjct: 5   EVINNIKIKTIYGKLPKSVNNISQDSRKIGEGDVFVAIKGYTVDGHNYIGKVIEQGA-AL 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           V++S Y  +D++     N  ++VV      K  S+ A  +      + +AVTGT+GK+S+
Sbjct: 64  VIASRY--EDYNI---ENCAVIVVKEHEIEKIASMIAKAINHGPAVHTVAVTGTNGKTSI 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVT 183
           ++ V  + +    SS  IG     + F +++        TTP  + L   +  L  + + 
Sbjct: 119 STLVHNMLRNLDESSAFIGT----NGFGKNDNEPVYFGNTTPDVVTLHNKIGELRRENIK 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +++ EASSH +   R+  + +    FTNL  +H+D+H   Q Y   K  LF  L    S 
Sbjct: 175 NLAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNFSE 234

Query: 244 A---IIYADDAY----SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           A   ++  DD Y    SK +  +  N   +  +  +    I   K   I+  Q    S E
Sbjct: 235 AKYGVLNKDDDYYGIMSKCLYHQEINYSVKDETADFYAYNIKQFKENGIYKTQFTLNSPE 294

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  F+      G+F V N L A       G     ++  L  L  + GR E +G +    
Sbjct: 295 GT-FECTTNYIGDFMVSNVLAAMIAVWVKGYSVEKLVSILPSLGALYGRMEILG-DGLPI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AHT +  + +L+  R I  G R +++ G GG RD  K P++G+I +  AD  I+
Sbjct: 353 DIISDFAHTPDGYKKLLEATREIRKGKRTLLLTGMGGGRDISKGPLIGEI-ISEADYVII 411

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T D+PR ED E +   I  G+    + +   R +A++  IE+    DV+++A KG E   
Sbjct: 412 TTDSPRDEDVEVLMGAIEKGMTHKNYEKVWFRTDAVKRVIELAEPGDVVILASKGREDYE 471

Query: 474 IVTNGEK 480
           I+  G+K
Sbjct: 472 ILKGGKK 478


>gi|291276864|ref|YP_003516636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
 gi|290964058|emb|CBG39898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
          Length = 434

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 205/444 (46%), Gaps = 60/444 (13%)

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRL---------------YGKHPENILAVTGT 123
           L D S   +S+  +L V+ +R   + FA ++               Y   P  I+ +TGT
Sbjct: 17  LSDDSREAQSDEAVLFVETSRN--AFFAEQMRKEGRDILHYRDLKEYFTFPAQIIGITGT 74

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQG 181
           +GK++ A+ +  +  ++G     +G         Q     LTTP  + L + L+ L   G
Sbjct: 75  NGKTTTANLIYHVLLKNGKKCAMLGTQGLFFGGKQIKPKGLTTPGILELYEDLALLHELG 134

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +E SSH + Q R+ G+   A   TN+  DH+DYH+T  +Y   K       L   
Sbjct: 135 CEVLVMEVSSHAISQDRIFGLDFAAKILTNITSDHLDYHKTLASYIATK----NAFLSDG 190

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEG 297
              II  D+  +    K   + G              +K  C +     +K   T+  +G
Sbjct: 191 GLKIINKDEENANFSPKNTKSYG--------------VKNPCDLQAKNFDKNHATLQYQG 236

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +++    PL G   +YN ++A  LC+    G++   +L  L+    V GR E V  N   
Sbjct: 237 REYMLKMPLYGLHNLYN-IMACVLCVRELFGLEMEQILSSLQDFGGVSGRMEVVCQNPM- 294

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VD+AHT + +E IL+         + VVFG GGDRD+ KRP+MG +    A    V
Sbjct: 295 --VIVDFAHTHDGIEKILQGF---LGQSLSVVFGAGGDRDRSKRPLMGGVVRKYAKKIYV 349

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPRSEDP  I  +I+ GI    G +   +R EAI+ A++     ++L V GKG ET 
Sbjct: 350 TSDNPRSEDPMSIIRDILEGIEDREGVVVLPDRYEAIKKALDHQEPGEILFVLGKGDETH 409

Query: 473 HIVTNGEKKMSVDCD---IIREIL 493
            I+ +      VD D   +IRE+L
Sbjct: 410 QILAD----RVVDFDDRMVIRELL 429


>gi|307244124|ref|ZP_07526242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492495|gb|EFM64530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 495

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 143/480 (29%), Positives = 225/480 (46%), Gaps = 49/480 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q +E +I+ +  DSR  +   IFVAI G   DGH ++  A  +G  A VV+    L +  
Sbjct: 20  QLKECEIDNICYDSRKARKNGIFVAIKGETVDGHKYVDSAYQKGCRAFVVNDNMDLAE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA---SFVQQICQRS 140
                +  +++VD++R  LS  ++  +G +P   L V G +G        ++++ +  +S
Sbjct: 78  -----DAIMIIVDDSRNCLSHISANFFG-NPSKELKVIGVTGTKGKTTITNYLKSVLTKS 131

Query: 141 GLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           GL++  IG      +  +   + TTP    L K +  +   GV  V++E SS GL   R+
Sbjct: 132 GLNTGVIGTNGVFYNDYEGKTINTTPESYELHKTIREMVDAGVKCVAMEVSSGGLMMERV 191

Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           + +    G +TNL  DHI    H T + Y + K RLF          II  DD ++  ++
Sbjct: 192 NHVDFDIGIYTNLSPDHIGPKEHPTFEDYRDCKSRLFSLC----RHGIINIDDDHASYMI 247

Query: 258 KRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------F 304
            +A        S+     Y+ + I L +          T +  G DF ++          
Sbjct: 248 DKA-TCDIETFSIKKPSDYRAEDISLTR----------TKTSLGVDFKYIRDGQASQTHI 296

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PGEF VYNAL        +GID   +L  L    V  GR E + +      + +DYAH
Sbjct: 297 ASPGEFSVYNALAVIATANYLGIDKDKMLSALATAQV-DGRVEVIPSIP-DITVVLDYAH 354

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              SLE +L+ +      R+I VFG  G R   +R  +G +A  L DI+I+T DNP  ED
Sbjct: 355 NGVSLENVLETLLKYKPRRLICVFGSIGGRSVLRRKELGDVAAKLCDISILTTDNPDDED 414

Query: 425 PEKIRAEI----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P  I  +I    +      ++  +R +AI   IE+    D+++VAGKGHE   I+ +GE+
Sbjct: 415 PMNIINDIEESFVDSKCQVLKIVDRSQAILKGIEIAQPGDMVIVAGKGHEKYQII-HGER 473


>gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 525

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 143/516 (27%), Positives = 245/516 (47%), Gaps = 48/516 (9%)

Query: 3   LQDLIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + D+ ++ + +L I Q    P Q    KIN +S DSR+     +FV + G   DGH F+ 
Sbjct: 19  IMDIYFEQYGQLNIRQRWGSPSQ----KINSISYDSRNAGPQSVFVCMGGENHDGHTFLE 74

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           +AIA+GA  +   +A  L++FS      T  L  ++ R FL+  +   +G+  E I  + 
Sbjct: 75  EAIAKGAAVLAGENAAILEEFSRKFPELT-FLQTEDARAFLAQLSIIFHGRIHEKIHTVG 133

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-----FAQDNRLTTPSPIYLAKAL 174
           +TGT+GK++VA+FV+ +    G+ S  IG    +SS     F Q    TTP    L    
Sbjct: 134 ITGTNGKTTVAAFVKSLMTALGIPSGSIGTNGVLSSMGPVSFVQSTP-TTPEASDLHAIF 192

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  + +G    ++E SS  ++Q R  GI       TNL  +H+++H+T + Y  AK++LF
Sbjct: 193 ADFAKRGDQLAAMEVSSVAIEQQRTAGINFDVAIHTNLSPEHLEFHKTFENYKQAKLKLF 252

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK-QQV 291
            +       A++  DD             G  ++   +QG  +   LKK  A   K   +
Sbjct: 253 RQ----AKRAVVNLDD----------EGMGADIIK-DFQGSLLTYSLKKDSAADVKASNI 297

Query: 292 TISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            ++ +G  F+            P+ G + V N L A    + +G     ++E L ++   
Sbjct: 298 RVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLLSAICTAMHLGFTIGQIIEALPRVENP 357

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GRFE +    R  +I +DYAHT  +L+ +LK  + +   R+IV+    G RD+ K P M
Sbjct: 358 SGRFEVLKEFGRR-KIIIDYAHTPVALKSLLKEAKKLPHKRLIVMITGIGIRDKEKMPQM 416

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLN 457
            +   + AD  IV+ D+P   DP ++   ++ G         +++  R + +  A+ + +
Sbjct: 417 AQAVENQADQVIVSVDHPGFLDPWEVVGHVMKGFSNPRAGNILQEPTRRDGVLAALSVSD 476

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + D++++         IV  GEK    D +II+E  
Sbjct: 477 EDDLILLTSGCINGAQIV-KGEKIPHSDKEIIQEFF 511


>gi|75764855|ref|ZP_00744223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74487658|gb|EAO51506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 297

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/278 (36%), Positives = 149/278 (53%), Gaps = 18/278 (6%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAHNA 263
           FTNL +DH+DYH+T + Y +AK  LF +L       +E  A++ +DD  ++E M+   + 
Sbjct: 2   FTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMR---ST 58

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              V++ G      I  K +         T+    +  +    L G+F VYN L A    
Sbjct: 59  AATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAAG 118

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTI 379
           +  G+    ++  +++L  VPGRFE V     GG+ Y   VDYAHT +SLE +LK  +  
Sbjct: 119 LVSGVKLQTIIAVIKELAGVPGRFEVV----DGGQNYTVIVDYAHTPDSLENVLKTAKQF 174

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  I  +++ G  G 
Sbjct: 175 AKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASGN 234

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +    +R EAI  AI  +   D++++AGKGHET  I+
Sbjct: 235 NYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 272


>gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
 gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
          Length = 508

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 225/474 (47%), Gaps = 38/474 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S      DF +   S
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVIVCSRDV---DFYS---S 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV   +  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYHIYLLLKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++G  ST+       S      R +TP    +   LS +      +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSNMVKNEAQYAILESTSHGLDLE 197

Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y N K+ LF  +       +I  DD YS  
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DFTRFEFYHKGVKYFANVNLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I   D   +++ L+ +  + GR + +    +   + +DYAHT  +   
Sbjct: 313 ENVMAALILVSQILNSDIQDIVDKLDCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +  T+ R+I VFG  G+RD  KR + G+IA   +D+ ++ D++PR E+   I  +
Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDLIVLCDEDPRGENSMCIIKD 431

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI   +E        +R +AI  AI +    D++V  GKGHE+  I  N E
Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485


>gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
 gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
          Length = 486

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 139/477 (29%), Positives = 227/477 (47%), Gaps = 48/477 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  ++ DSR ++ G++FVA++G         DGH FIP+A+A+GA A+V     SL   
Sbjct: 18  RVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPLDGHDFIPEALAKGAIAVVGERELSLP-- 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139
                   P L V + R+ L+  A   +G+ P+    +L +TG+ GKS+ AS +  + Q 
Sbjct: 76  -------VPYLRVGDAREALAHLARHFFGE-PDRKLALLGITGSKGKSTTASLLHHLLQA 127

Query: 140 SGLSSFQIGPTS-TISSFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               +  +      +   A+ N    TTP    +   L     +G+    +E SSH L  
Sbjct: 128 GEKPAALLSTVGLRLGEEARPNIGHFTTPEAPQVYGFLREAVERGLEAAVLEVSSHALAL 187

Query: 197 HRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            R++G+    G F +    DH+D H T +AYF AK  L E    +   A++     + K 
Sbjct: 188 KRVEGLSYRIGVFVSFYPDDHLDLHGTAEAYFAAKALLVE----RSHLAVLNTRLPHLKR 243

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++ R H      L  G  G+ +  + +       + T+       +   P+ G + + NA
Sbjct: 244 LLPRPH------LLFGPGGE-VWGEGLREGEEGLRFTLHTPWGSGEAFLPMLGRYNLDNA 296

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A+   +A G+    VL+ L     VPGR E V    +  R+ +D+AHT  SLE  LK 
Sbjct: 297 LAASAAALAYGLSLERVLQGLATFRGVPGRMEVV--QRKPFRVVIDFAHTGKSLEEALKT 354

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R  T GR+++V G  G+RD  +R  +G++A  LAD    T+++ R+ED + I   +   
Sbjct: 355 LRATTRGRLLLVVGAAGERDPRRREDIGRVAARLADKTFFTEEDHRTEDLQAILEALAKA 414

Query: 436 IPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                E+G       +R EAI  A+    + D +++AGKGHE  H +  G   +  D
Sbjct: 415 A---REEGGLYELIPDRKEAIFCALSEAREGDTVLLAGKGHE--HTLERGTLALPWD 466


>gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 541

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 145/476 (30%), Positives = 234/476 (49%), Gaps = 46/476 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +S DSR I  G +++A+ G++  G  F   A+A GA AI+   A + Q  SA +  
Sbjct: 41  QVTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAVAILTDRAGA-QIASAEVPQ 99

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P+L V   R      A+++Y +   ++  +TGT+GK++ +  ++ I      SS  IG
Sbjct: 100 HVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTSYLIRSILAALERSSGLIG 159

Query: 149 PTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TI   A +    + LTTP    +   ++ ++ + +  V +E SSH L   R+DG+  
Sbjct: 160 ---TIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEVSSHALAYGRVDGLVF 216

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+D H T   Y   K  LF     K   A++  DD + +++  RA    
Sbjct: 217 DVAGFTNLTQDHLDLHGTMAEYAATKAELFSSRRSKR--AVVTVDDQWGRQIAARAD--- 271

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISVEG-------KDFDFLFPLPGEFQ 311
             VL +  Q     L+        +         I + G       + F F   LPGEF 
Sbjct: 272 VPVLRLQIQPTETPLEDPSDWRVLKSEPLGLGWRIELHGFEADGAERSFKFTTSLPGEFN 331

Query: 312 VYNALVAAGLCIAIGIDSALV---LEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSN 367
           + N+ +A  +  A G+D+  +   L+  + L + VPGR + +   S+     VD+AH  +
Sbjct: 332 IANSALAVLMVYASGVDTGALQRALDEHDPLSINVPGRMQLI---SQEPVAVVDFAHNPD 388

Query: 368 SLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +L+  +  +R     T GR+I VFG  G RDQ KRPIMG +A   +D+ I+TDD+P  ED
Sbjct: 389 ALQRAMDAVRPNNNETRGRLITVFGATGQRDQTKRPIMGALAARGSDVVIITDDDPHDED 448

Query: 425 PEKIRAEIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           PE+IR ++  G    ++ G           R  AI  A+ +  K D +++AG+GHE
Sbjct: 449 PEQIRDQVFDGAAKAVKAGQLDTVLELVAPRAAAIDRAVALAGKDDAILIAGRGHE 504


>gi|255321741|ref|ZP_05362896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
 gi|255301221|gb|EET80483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
          Length = 430

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 139/399 (34%), Positives = 198/399 (49%), Gaps = 55/399 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAK 172
           I+ +TGT+GK++ A+    IC       +  G   T  +F      D++  T S I   +
Sbjct: 61  IIGITGTNGKTTTAAL---ICATLLNLGYGCGLCGTRGAFINGERIDDKALTTSEIL--R 115

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            LSYL   S +G  +  +EASSH + Q R++ +      FTNL +DH+DYH T + Y   
Sbjct: 116 TLSYLKAASERGCEYFVMEASSHAIAQKRIESLDFAMKIFTNLTQDHLDYHGTFEEY--- 172

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKF-----IHLKK 281
             R+  E    ++P +I  DD     +     NA    L        G++     IH   
Sbjct: 173 -ARVKSEFFADDAPKLINIDDRGG--IKFNPANALTYALHANADFAPGEYSLEGGIH--- 226

Query: 282 VCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEK 338
            CA+   + Q+ +S           L GEF +YN L+AA  C+A   D  L  +     K
Sbjct: 227 -CALKTPRGQMALSSN---------LHGEFNLYN-LIAAASCVATLTDRPLEQIALAASK 275

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V GR E V   SR   + VD+AHT + +E +L  +R     +I+ VFG GGDRD+ K
Sbjct: 276 FDGVEGRMEVV---SREPLVIVDFAHTPDGIEKVLNALR---HRKIVAVFGAGGDRDRTK 329

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIE 454
           RP MG IA   A   +VT DNPRSE+PE I AEI  G+    E+     NR EAI+ A+E
Sbjct: 330 RPKMGAIAQKYAHRLVVTSDNPRSEEPETIIAEICGGLE-MNERVKCIANRKEAIKYALE 388

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            L + ++LV+ GKG ET   +  G K    D  ++RE+L
Sbjct: 389 SLAQDEILVILGKGDETYQEI-KGVKYPFSDKQVVRELL 426


>gi|256832301|ref|YP_003161028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
 gi|256685832|gb|ACV08725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
          Length = 534

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 215/474 (45%), Gaps = 48/474 (10%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSL-QDFSATIRSNTPILVVDN 97
           ++ G +FVA+ G +  G  +I QAI  GA  ++   A Y + ++  A++    P+LVVD+
Sbjct: 40  VRPGDLFVAVAGQRSHGAQYIEQAIHAGARGVLTDEAGYRIARELDASVGHELPVLVVDD 99

Query: 98  ---TRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTST 152
               R+     A+ +YG+    +     T       +  F+  I + +G  +  +G   T
Sbjct: 100 GHDVREIAGQVAATIYGQPAARLTTAGITGTNGKTTTTFFLDAILRTAGHHTGLMGTVET 159

Query: 153 I--SSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     R T  +P    +LA+ L     + VT VS+E SSH L  HR+ G +    
Sbjct: 160 RLGDHTVSSTRTTVEAPELQGFLARCLE----EEVTAVSMEVSSHALALHRITGTQFDVV 215

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+D+H +   YF AK +LF     +    +I  DD +  ++  +A      V
Sbjct: 216 GFTNLQRDHLDFHGSMAEYFAAKAQLFHSDYARA--GVINVDDDWGVQLHHQATIDTWSV 273

Query: 268 LSVGYQGKFIHLKKVCAI-------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +   +H              +  Q V     G+       LPG   V NA +AA 
Sbjct: 274 ATTPERAAHVHADWTVVEVGDYQPNYGTQFVLQGPHGQRLRCHSALPGTVNVANAALAAL 333

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--- 377
           +    G+    + E L  LH +PGR E V   ++   I VDYAHT+ +L+  L ++R   
Sbjct: 334 MARLAGVSDNNITEGLRSLHSIPGRMEVVSKPAQPLTI-VDYAHTAEALDFALSSLRQDL 392

Query: 378 ------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                 + T G + VV G  GDRD  KRP MG +A  LAD+  + DD+P  ED   IR +
Sbjct: 393 AARAHESGTHGVLRVVCGAAGDRDPSKRPEMGAVAARLADVVYIADDDPHGEDRATIRQD 452

Query: 432 IIHG-------------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           ++ G             I    E   R  AI   I   +  D++++AG+GHETV
Sbjct: 453 LLKGAQSEAQRQAAHGRIIDVKEYDQRESAIDDVIAAASDGDIILIAGRGHETV 506


>gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
 gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
          Length = 516

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 220/483 (45%), Gaps = 41/483 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPIL 93
           D+R ++ G +FVA+ G    G  F   A ++GA A++   A    L D       + P +
Sbjct: 46  DNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPAGMAFLTDL------DIPAI 99

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSG-LSSFQIGPT 150
           +V +        A+  + +  + + A   T       +   ++ +  R G LSS      
Sbjct: 100 IVPDVASVAGQAAAIAFNQPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSLVGTVE 159

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + +        +TTP    L    +    + V H+ VE SSH L   R+D +      FT
Sbjct: 160 AAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFACVGFT 219

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR---V 267
           NL +DH+DYH T + YF  K  LF +   +    +I  D  + + + ++   +G      
Sbjct: 220 NLSQDHLDYHGTMEQYFQTKASLFSQ--QRSDRQVIIVDGVWGQRLAEQLERSGQHDFVT 277

Query: 268 LSV-----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-----LV 317
           LS+      +QGK I L         +    + +GK+      +PG F   NA     +V
Sbjct: 278 LSLTGRPADWQGKIIELDG----GYTELRLRAFDGKEASVQVRMPGTFNAINAALAIVMV 333

Query: 318 AAGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
             GL  +       +L HL    +   VPGR E +    R   + VD+AH  +S +++L 
Sbjct: 334 VTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPR---VIVDFAHNPDSTKVLLD 390

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R  T GR+++V G  G RD GKRPI+G+IA +LAD   VTD +   E+P  IR +++ 
Sbjct: 391 TMRISTKGRLLLVMGADGQRDSGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMA 450

Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           G+ G    F+E   R  AI  AI     +D +V+ G+GHE++     G+  +  D  + R
Sbjct: 451 GMKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDLD-DRVVAR 509

Query: 491 EIL 493
           E L
Sbjct: 510 EAL 512


>gi|301165430|emb|CBW25001.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Bacteriovorax marinus SJ]
          Length = 461

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 199/396 (50%), Gaps = 59/396 (14%)

Query: 92  ILVVDNTRKFL---SLFASRLYGKHPENILA-VTGTSGKSSVASFVQQICQRSGLSSFQI 147
           I VVD +  FL    L A+ +Y    +  LA +TGT+GK++V+    Q+    G  S  I
Sbjct: 80  IWVVDPS-DFLWAQDLIANEIYPDKLKIKLAGITGTNGKTTVSYLAMQLATLLGYPSISI 138

Query: 148 GPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           G      S     +D   TTPS + L K + +        + +E SSH L Q+RL+ ++L
Sbjct: 139 GTIGVRDSKNILEEDILSTTPSYLELRKII-HRYQDDYKFIFMEVSSHALAQNRLNKVRL 197

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE------LLPKESPAII--YADDAYSKEV 256
            + ++T+  +DH+DYH+T + YF AK+++ E       ++P    +++   AD+  S+++
Sbjct: 198 KSCAWTSFSQDHLDYHKTNEEYFKAKLKILESSDDKNLIVPSSEKSLLALLADNNVSRKI 257

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           ++   +     L  G++  +             Q  +SV                   A+
Sbjct: 258 VEPYFD---ECLEAGFKASY------------NQANLSV-------------------AI 283

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               + I   ID  L    L KL +  GRFE +  N     + VDYAHT ++LE I   I
Sbjct: 284 ALCEVLIGESIDRKL----LSKLSLPAGRFEAIKYNEHI--VIVDYAHTPDALENICGTI 337

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +   +S  + V+FGCGGDRD+ KRP+MGK     AD  IVT DNPR+E+P  I  +I  G
Sbjct: 338 KKDFSSFELRVIFGCGGDRDRSKRPLMGKAVSKYADNIIVTSDNPRTEEPSSIIDDITPG 397

Query: 436 IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I   +I   +R  AI  ++E L++  V+++AGKGHE
Sbjct: 398 ISRDYIRIEDRRLAIEKSLEDLSRPTVVLIAGKGHE 433


>gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 516

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 220/483 (45%), Gaps = 41/483 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPIL 93
           D+R ++ G +FVA+ G    G  F   A ++GA A++   A    L D       + P +
Sbjct: 46  DNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPAGMAFLTDL------DIPAI 99

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSG-LSSFQIGPT 150
           +V +        A+  + +  + + A   T       +   ++ +  R G LSS      
Sbjct: 100 IVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSLVGTVE 159

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + +        +TTP    L    +    + V H+ VE SSH L   R+D +      FT
Sbjct: 160 AAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFACVGFT 219

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR---V 267
           NL +DH+DYH T + YF  K  LF +   +    +I  D  + + + ++   +G      
Sbjct: 220 NLSQDHLDYHGTMEQYFQTKASLFSQ--QRSDRQVIIVDGVWGQRLAEQLERSGQHDFVT 277

Query: 268 LSV-----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-----LV 317
           LS+      +QGK I L         +    + +GK+      +PG F   NA     +V
Sbjct: 278 LSLTGRPADWQGKIIELDGGFT----ELRLRAFDGKEASVQVRMPGTFNAINAALAIVMV 333

Query: 318 AAGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
             GL  +       +L HL    +   VPGR E +    R   + VD+AH  +S +++L 
Sbjct: 334 VTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPR---VIVDFAHNPDSTKVLLD 390

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R  T GR+++V G  G RD GKRPI+G+IA +LAD   VTD +   E+P  IR +++ 
Sbjct: 391 TMRISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMA 450

Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           G+ G    F+E   R  AI  AI     +D +V+ G+GHE++     G+  +  D  + R
Sbjct: 451 GMKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDLD-DRVVAR 509

Query: 491 EIL 493
           E L
Sbjct: 510 EAL 512


>gi|33862503|ref|NP_894063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9313]
 gi|46576942|sp|Q7V8U6|MURE_PROMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33640616|emb|CAE20405.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9313]
          Length = 507

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 185/356 (51%), Gaps = 37/356 (10%)

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           P +  ++FA  +RL       LA+A+   +  GV    +E SSH L+Q R+ G +     
Sbjct: 155 PATHTTAFA--DRLQA----QLAQAVEAGAELGV----MEVSSHALEQQRVAGCRFAGAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKRAHNAGCR 266
           FTNL +DH+DYH + +AYF AK +LF   L +   + A++  D  +   + +R  +   R
Sbjct: 205 FTNLTQDHLDYHCSMEAYFEAKAQLFAPPLLESGSAKAVVNIDSPWGARLAQRLGDTCWR 264

Query: 267 V-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG---------KDFDFLFPLPGEFQVYNAL 316
             L+ G       L++  A     ++T+S +G          +  F  PL G F + N L
Sbjct: 265 SSLAEGV------LQQADAELKMTELTMSSDGVQGRLISPCGEGWFDSPLMGRFNLMNLL 318

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYAHTSNSLEMI 372
            A G+ +  G+   L+L+ +     VPGR E V       ++   + VDYAHT + LE  
Sbjct: 319 QAVGVLLQQGLPLPLLLKAIADFRGVPGRMERVLIPAADATQVPTVLVDYAHTPDGLENA 378

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK  R  TS  +  VFGCGGDRD+GKR  M  IA  LAD  +VT DNPR+EDP++I A++
Sbjct: 379 LKASRPFTSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVTSDNPRTEDPQQILADV 438

Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           + GIP       + +R  AI  AI      DV++VAGKGHE   I+  G  K+  D
Sbjct: 439 VAGIPEGTTCTVEVDRAVAIALAIAEAAPGDVVLVAGKGHEDYQIL--GTSKVHFD 492


>gi|307720218|ref|YP_003891358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978311|gb|ADN08346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 431

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 196/406 (48%), Gaps = 46/406 (11%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTT 164
           + L+G +   I+ +TGT+GK++ AS +       G  +   G           +   LTT
Sbjct: 54  AELFGVNKIKIIGITGTNGKTTTASAIYSFLLDLGYKAALQGTRGLFMNDEVCEGKTLTT 113

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           PS +   K +      G  +  +E SSH L Q R++G+K      TN+ +DH+DYH+T +
Sbjct: 114 PSVLNTYKHIYQAVCAGCEYFIMEVSSHALVQRRIEGLKFELKILTNITQDHLDYHKTIE 173

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR----------VLSVGYQG 274
            Y   K   F++    ES  +I  D+  +    K A+  G             L+ G  G
Sbjct: 174 EYIAVKNGFFQD----ESKKLINKDEPKAAFNFKNAYTYGIENPATYRLMAYSLNEGSSG 229

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--V 332
              H +++                   F   L G F +YN L+AA     +  D  L  +
Sbjct: 230 IIQHFQEIVP-----------------FTASLHGFFNLYN-LMAAIAATHLITDKTLEEI 271

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + ++    V GR E V        + VD+AHT + ++ +L  ++      +IVVFG GG
Sbjct: 272 ADVVDNFAGVSGRMEQV---CAAPNVIVDFAHTPDGMQQVLNALK---EKELIVVFGAGG 325

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAI 449
           DRD+ KRPIMG++A  LA   IVT DNPR EDPE I  +I+ GI      I + NR +AI
Sbjct: 326 DRDRLKRPIMGRVAASLAKKVIVTSDNPRHEDPEIIIDDILEGIQDKTNIIVELNRKKAI 385

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           + A++M   ++V+V+ GKG E   ++ + EK    D ++++E+L L
Sbjct: 386 QMALDMQEDEEVVVILGKGDEAYQVIYD-EKFAFDDREVVKELLNL 430


>gi|320335408|ref|YP_004172119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
 gi|319756697|gb|ADV68454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
          Length = 486

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 146/495 (29%), Positives = 229/495 (46%), Gaps = 60/495 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL          +L++ P       +  V+  +  ++ G+ FVA+ G + DGH F+
Sbjct: 1   MKLHDLAA--------ELNLTPPA-ENPDVTGVTHHAGWVRPGFAFVAVRGARVDGHAFM 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
            +A A GA   V      L D    + S  P + V   R  L+  A+ L G HP     +
Sbjct: 52  AEAAANGA---VCVFGEGLPD---GVPSPLPYVRVPGARAALADAAAALAG-HPSRALRV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYL 170
           + +TGT GK++ +   + + + +G+   + G  ST+     D  L       TTP    +
Sbjct: 105 VGITGTDGKTTTSWITRHLLRAAGV---RTGLLSTVGYELPDGALRHFPAHFTTPEAPEV 161

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS + + G   V +EASSH L   R+  +      +T+L  +H+D+H T + YF  K
Sbjct: 162 QSTLSEIGASGGEAVVLEASSHALALDRVRAVDWDVAVWTHLTSEHLDFHGTVEQYFADK 221

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHN---------AGCRVLSVGYQGKFIHLKK 281
            RL E    +   +++ ADD ++ ++  RA           A  R   +  +   +H   
Sbjct: 222 ARLVE----RARFSVLNADDPWTAQLRPRAAAYVTYGVEDVADWRAGDIEERSTGLHFHV 277

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +  +             +FD   P+ G F V+NAL A      +G     ++  L     
Sbjct: 278 LSPL------------GEFDAHLPMVGRFNVHNALAAMAAAAHLGSGVDALVAGLASFRG 325

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRP 400
           VPGR E V     G R+ VD+AHT  SLE  L+ +R+ T GR+IV+ G  GG RD GKR 
Sbjct: 326 VPGRMELVPGGDAGVRVVVDFAHTPPSLEKALEALRSTTRGRLIVLLGSAGGPRDPGKRA 385

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEM 455
            +G++A  LAD AI T+++ R    + I  E+  G        F    +R +AIR A+ +
Sbjct: 386 PLGEVATRLADTAIFTEEDHRDTPLDDILQEMARGAREAGRGNFELVPDRRDAIRRAVAL 445

Query: 456 LNKQDVLVVAGKGHE 470
               D +++AGKG E
Sbjct: 446 ARPGDTVLLAGKGPE 460


>gi|149184156|ref|ZP_01862479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848134|gb|EDL62461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 299

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/285 (37%), Positives = 152/285 (53%), Gaps = 14/285 (4%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAHNA 263
           FTN+ +DH+DYH+T + Y +AK  LF +L       K   AII  DD  +   +   H+ 
Sbjct: 8   FTNITQDHLDYHRTMEEYRSAKSLLFSQLGNSYDEKKLKYAIINNDDPSAGFFI---HST 64

Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              V++ G  Q    + + +   HN    T+    +       L G F +YN L AA   
Sbjct: 65  AAHVVTYGVSQDADFYAEDIELRHNGSSFTMVTPSERIKMDIQLAGRFNIYNVLAAAASA 124

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G+    +   L+ ++ V GRFE V    +   + VDYAHT +SLE +LK I TIT  
Sbjct: 125 NISGVPLKNIKAALQSINGVSGRFEQVEA-GQDFSVIVDYAHTPDSLENVLKTIETITDE 183

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFI 440
            +IVV GCGG+RD+ KRPIM +IA    D  + T DNPR+EDP  I A++  G+    +I
Sbjct: 184 NVIVVVGCGGNRDRTKRPIMAEIACKYGDQVVFTSDNPRNEDPNAIIADMTTGLKHTNYI 243

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              +R EAI  A+ +  K DV+++AGKGHET  I+  G+   S D
Sbjct: 244 VIIDRQEAINHAVSLAGKGDVVLIAGKGHETYQII--GDAVTSFD 286


>gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 491

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 146/489 (29%), Positives = 236/489 (48%), Gaps = 35/489 (7%)

Query: 1   MKLQDLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+     ++ NQ+  +      E  I  +S DSR IQ   +F  + G   DGH F
Sbjct: 1   MKLVDLL-----DVKNQIYHLIQGTIEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116
              A  +GA  +V S    ++          P++ V++  K ++  A R Y   P    +
Sbjct: 56  AKMAEEKGAVCLVASKHVDVK---------IPVVYVEDVIKTMAFLAMRFYHD-PSGSMS 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT---TPSPIYLAKA 173
           ++ VTGT+GK++    ++ + +++  S   IG       + Q++  T   TP  + L K+
Sbjct: 106 LIGVTGTNGKTTTTHIIRHLFEKNKKSCGMIGTNGIW--YHQEHIYTPNTTPDSLTLQKS 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +  +GV   + E SSH L   R+  +      FTNL  +H++ H T   Y  AK  L
Sbjct: 164 LAKMKEEGVFICTSEVSSHALVMGRVQNVDFNVAVFTNLTHEHLETHHTMAEYGMAKSLL 223

Query: 234 FEELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           F +L    +   AI+  DD Y+K +  R  NA     S        + K +  + +K + 
Sbjct: 224 FAQLGSGNNGKIAILNKDDTYAKVIASRC-NATIWYYSTKDPSAEFYAKDMVYLASKTEF 282

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+  +G ++  + PL GEF V NAL A     A+       +E L     V GR + +  
Sbjct: 283 TLVFQGLEYPVISPLIGEFNVQNALAALAAYYALERHLEKGIEALSSFSGVEGRMQTI-E 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLA 410
           N  G    VD+AHT + LE  +  ++ +   RII + G  GG+RD   R  +G+IAL+ +
Sbjct: 342 NDLGIHAIVDFAHTPDGLEKAMAALKKLNHKRIITMIGHDGGNRDNSIRQDLGRIALEYS 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D  + T +NPR EDP KI  E+++G+      F++  +R +AI   + +  K D+L   G
Sbjct: 402 DYVVFTSENPREEDPMKIMKEMVNGLEVHHYEFVK--DRHKAIDRVVALGQKGDILFFTG 459

Query: 467 KGHETVHIV 475
           KGHE   ++
Sbjct: 460 KGHEPYQLI 468


>gi|255086996|ref|XP_002505421.1| predicted protein [Micromonas sp. RCC299]
 gi|226520691|gb|ACO66679.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 221/460 (48%), Gaps = 22/460 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +++DSR +  G +FV IVG K DGH F   A+A GA AIV             +  
Sbjct: 3   EVSGIANDSRVVLGGDVFVCIVGEKMDGHDFALDAVAAGAVAIVCERPID------GLGV 56

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P +VV + R  L   A+  YG    ++  + VTG SGK++V   V+ I   + +    
Sbjct: 57  DVPQVVVPSARAALPRLAAAFYGNPSASLTTVGVTGASGKTTVTHMVRAILDANDVRCGV 116

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           IG T+  S    D   ++P  +   + ++ +   G    ++E SS  L Q R+D      
Sbjct: 117 IG-TTGYSLDDYDVPTSSPDALQCQQLMAGMLDNGARATAMEVSSRDLAQGRVDCCDFDV 175

Query: 207 GSFTNLGRDHIDYHQTQQAYF-NAKMRLFEELL-PKESPAIIYADDAYSKEVMKRAHNAG 264
             FTNL  DH   H+   A   NA   LF  L  P+   A+I  D + +++  K   +A 
Sbjct: 176 AVFTNLRGDH---HEGDAASCRNATAELFRRLTDPERQRAVINLDVSTAEDGEKPFDDAA 232

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               +      F+    +        VTI      FD +  L GE  V N   A    IA
Sbjct: 233 YFSEAASAADVFVERADLSLFETA--VTIRTPVGTFDAITGLVGEVNVSNVAAAVAAGIA 290

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           + I   ++ E +E +   PGR E V    +   + VDYA T  +L+  ++++R   +  +
Sbjct: 291 LEIPLDVIAEGVEAMEPAPGRMELV-DEGQPFSVVVDYAQTPEALKRAIESVRKTGANNV 349

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443
           I VFGCGGDRD  KR  MG++A + +DI  VT+DNPR+EDP KI  +I   +     +  
Sbjct: 350 ITVFGCGGDRDASKRAEMGRVADEYSDIVFVTNDNPRTEDPYKILDDITMKLQNMCRRYV 409

Query: 444 --NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             +R  AIR AI M  + D +++ GKGHE   +V  G KK
Sbjct: 410 IVDRFYAIRAAIAMAGEDDAVLICGKGHEDYIVV--GTKK 447


>gi|325962944|ref|YP_004240850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469031|gb|ADX72716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 550

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 151/485 (31%), Positives = 238/485 (49%), Gaps = 52/485 (10%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P    +  +  +S +SR ++ G ++VA+ G    G  F  QAI  GA AI+   A + 
Sbjct: 47  VVPGASADVAVTGISLNSRTVERGDLYVALPGAVRHGADFAAQAIEAGAAAILTDDAGA- 105

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQ 134
           +  + +  +  P+LVV   R  +   ++ +Y  +     P  +  VTGT+GK++   F+ 
Sbjct: 106 RLLALSSDTAVPVLVVGAPRNVVGPLSAMIYRSNSTEGTPLQMFGVTGTNGKTTTTYFIT 165

Query: 135 QICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            + +  G  +  IG    ++  +   + LTTP    +   L+ +   G+T  ++E SSH 
Sbjct: 166 SLLRSLGKKTGLIGTIEILAGGSPVPSLLTTPESPDVHGLLALMRENGLTAAAMEVSSHA 225

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +   R+DG+      FTNL +DH+D H T + YF  K  LF     ++  A++  DD + 
Sbjct: 226 ISYQRVDGVTFDVAGFTNLTQDHLDLHHTMEDYFATKAELFTPARARK--AVVTVDDEWG 283

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFP----- 305
           + +      AG   + V      I L           VT +     G +F    P     
Sbjct: 284 RRL------AGAAAVPV------ITLSTSAQHPGDWTVTETAARGLGTEFTLRGPGGTRL 331

Query: 306 -----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGG 356
                LPG F V NA +AA + +A G+D+A +   L+        VPGR + V   S   
Sbjct: 332 RVHTGLPGTFNVANAALAAVMVLAGGVDAATLQAALDAEDPFTVAVPGRMQLV---SEQP 388

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              VD+AH +++L   L+ +R+   G R+IVVFG  G RDQGKRP MG IA  LAD  IV
Sbjct: 389 AAVVDFAHNTDALARALEAVRSPEPGSRLIVVFGATGQRDQGKRPAMGAIAARLADTVIV 448

Query: 416 TDDNPRSEDPEKIRAEIIHG---------IPGFIEKG-NRIEAIRTAIEMLNKQDVLVVA 465
           TDD+P  ED   IRA+++ G         +P  +E+   R +AI+ A+E+   +D ++VA
Sbjct: 449 TDDDPHDEDAAAIRADVLAGAREAKARDSLPCILEEVFPRDKAIQRAVELARPEDTILVA 508

Query: 466 GKGHE 470
           G+GHE
Sbjct: 509 GRGHE 513


>gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
 gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
          Length = 508

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 142/478 (29%), Positives = 226/478 (47%), Gaps = 46/478 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRD---MDFYSP--- 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGI-- 138

Query: 145 FQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            ++G  ST+  F  D          R +TP    +   LS +    V +  +E++SHGLD
Sbjct: 139 -KVGFISTV--FLDDGDGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGLD 195

Query: 196 QH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +   A  FTN+G +H+++H T Q Y NAK+ LF  +       +I  DD Y 
Sbjct: 196 LETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYY 255

Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K  +K++     +     +   FI  K      +  +     +G  +     L G F
Sbjct: 256 SDFKNAVKKSFTYSLKSNKADFFVSFIDEKI-----DSTRFEFYHKGVKYSANVSLLGSF 310

Query: 311 QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            V N + A  L   I   D   +++ L  +  + GR + V    +   + +DYAHT  + 
Sbjct: 311 NVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL-GQNFSVIIDYAHTPGAF 369

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +    +   + R+I VFG  G+RD  KR + G+IA + +D+ I+ D++PR E+   I 
Sbjct: 370 SKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADNYSDLIILCDEDPRGENGMCII 429

Query: 430 AEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            +I  GI          FI   +R  AI  AI +    D++VV GKGHE+  I  N E
Sbjct: 430 KDIAKGIVNKVINQDLFFIP--DRKLAIEKAISLARAGDLVVVLGKGHESSIIYKNRE 485


>gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 506

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 230/478 (48%), Gaps = 23/478 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ V+ DSR +Q    FV I G K DGH F+  AI  GA  +   SA  L+      
Sbjct: 21  KRVISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDAIRNGAAVLAGESAEVLEKAGRKY 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
              T ILV D  R FL+  +   Y +  EN+  + VTGT+GK++V ++V+ +    G  +
Sbjct: 81  PDRTFILVED-ARAFLAQLSILFYKRAHENLTTIGVTGTNGKTTVTAYVKSLLTLLGTPT 139

Query: 145 FQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             IG T  ISS    N      TTP    L         +G     +E SS    Q R++
Sbjct: 140 GSIGTTGIISSTGTINLKKSTPTTPEASDLHYIFDQFKERGDEAAVMEVSSVSTVQKRVE 199

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKR 259
           GI+      TNL  +H+++H+T + Y  AK++LF++       A++  DD+  +K+++K 
Sbjct: 200 GIEFDIAIHTNLSPEHLEFHKTFENYKEAKLKLFKQ----AKKAVVNIDDSGMAKDILK- 254

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            H+      S+  +    +    +  I ++    +  + + +    P+ G++ V N L A
Sbjct: 255 IHSGDVLTYSLDKRSDADVKASNLRTIGHETFFELKFQKESYIVRAPVIGDYNVANILAA 314

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  G     +L  L  +    GRFE + T     +I +DYAHT  +L+ +L+ ++ 
Sbjct: 315 VCTALHSGYSIHQILLALTSIEGPEGRFELL-TEYGNRKIMLDYAHTPAALDNLLREVKK 373

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +   R+IV+    G RD+ K P+M +     AD  +V+ D+P   DP++I + ++ G   
Sbjct: 374 LEYNRLIVLITGIGLRDKSKMPLMAETVEGRADEIVVSVDHPDFNDPDEIISNVLAGFSN 433

Query: 439 ------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                 + E+  R EA+ +A+ + N+ D++++         IV   E   S D D+I+
Sbjct: 434 PSADNIYTER-TRAEAVLSALALSNENDLVLLTSGCINGAQIVEGKEIPHS-DKDLIK 489


>gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 476

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 222/476 (46%), Gaps = 31/476 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSAT 85
           +++I  VSS+S+ I+  +IFVAI G + DGH +I  A+  GA  IV ++     ++    
Sbjct: 20  DKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYIENALENGASTIVYTNDDVEFKNEINY 79

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           I+     L +     FLS F S+        ++ VTGT+GK++ A+ V  +  + G +  
Sbjct: 80  IKVEDARLALAKISNFLSDFPSK-----SLRMIGVTGTNGKTTTANIVSFLLNKLGETCA 134

Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG   T  +F     L    TTP    +   L+     G+ +V +E SSHGL   R  G
Sbjct: 135 NIG---TDGAFFNGKTLPTEHTTPEITDINYILNEAKKDGIKNVVMETSSHGLCLKRNYG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I    G FTNL  +H+DYH+T   YF AKM     LL      ++  DD Y K+  +   
Sbjct: 192 IAYEYGVFTNLSPEHMDYHKTMDNYFKAKMI----LLNHSKKQVVNLDDDYGKKAKEIFK 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +A    ++     K  ++K+V        +   V G    F     G + +YN+L A  +
Sbjct: 248 DALTISINEDSNYKAENIKRV-----DMGLEFFVNG--VKFHLKRFGMYDIYNSLCAIAI 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G     + + LE    V  RFEF+  N  G  I VD+AHT+ S E + K++     
Sbjct: 301 ANDLGFKLEEISKALEGFKGVKSRFEFI-ENDLGINIVVDFAHTTTSFESLYKDLP--KD 357

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---- 437
            +   V+G  GDR    R  +G+I+      +++T D+P+ +  E I  +I  G+     
Sbjct: 358 RKKFAVYGISGDRTPDIRRGLGRISAKYDIFSVITTDDPKFDTFENISNQIKEGVEENNG 417

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             I   NR EAI+ AI    K D + + GKG E    +    K    + + IRE+L
Sbjct: 418 ECIIIRNRKEAIKYAISHAKKGDFVFMLGKGEEDFLKLKANIKTYYNEKETIREVL 473


>gi|289704960|ref|ZP_06501375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
 gi|289558296|gb|EFD51572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
          Length = 599

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 149/510 (29%), Positives = 225/510 (44%), Gaps = 91/510 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR ++ G ++VA+ G    G  F   A+  GA  ++  +A      +    ++
Sbjct: 69  VTGVSLDSRVVRPGDLYVAVPGAHAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 127

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L VD  R      A+R+YG   +    ++ VTGT+GK++ +     + +  G  S  
Sbjct: 128 APVLEVDAVRTAAGTVAARVYGGGRDAGPRLVGVTGTNGKTTTSFLAAALLEALGRRSGI 187

Query: 147 IGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +G T  I +  ++  + LTTP    L   ++ +  + V    +E SSH +   R+ G++ 
Sbjct: 188 VG-TILIRAGEREVPSTLTTPEATQLHALMALMREEEVDTAVMEVSSHAVAYQRIAGLRY 246

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE---VMKRAH 261
               FTNL +DH+D H + Q YF AK  LF+    +   A+I  D          M RA 
Sbjct: 247 AVAGFTNLTQDHLDMHGSMQEYFAAKAGLFDPA--RTDHAVITLDGGEGPRWGVAMARAA 304

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNK-----------------QQVTI--SVEGKDFDF 302
            A    L++G            A H+                   + T+  +  G++   
Sbjct: 305 GAPVTTLALGPAAP---TPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGRELRA 361

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--------------PGRFEF 348
              LPG F V NA +A  L +      A+  EHL+ L  V              PGR E 
Sbjct: 362 SVGLPGRFNVANAALAVLLVL-----HAVGEEHLDALAAVLDVPAGEGPLAAAVPGRMEV 416

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQGKRPIMG 403
           VG   R     VD+AH  + +   L+++    +     GR ++VFG  GDRD+ KRP+MG
Sbjct: 417 VG---REPDAVVDFAHNPDGMVQALRSLADARAAAGMRGRTLIVFGSAGDRDRDKRPVMG 473

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------- 452
            IA   AD+ IVTDD P SEDP  IRA I+         G R EA R A           
Sbjct: 474 AIAARAADVVIVTDDTPHSEDPAPIRAHIL--------AGARAEADRIAREEGRPVVIEE 525

Query: 453 -----------IEMLNKQDVLVVAGKGHET 471
                      +E+   QD +++AG+GHET
Sbjct: 526 VADRAAAIRRAVELAGPQDGILLAGRGHET 555


>gi|94984207|ref|YP_603571.1| UDP-N-acetylmuramyl-tripeptide synthetases [Deinococcus
           geothermalis DSM 11300]
 gi|94554488|gb|ABF44402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Deinococcus geothermalis
           DSM 11300]
          Length = 488

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 145/488 (29%), Positives = 225/488 (46%), Gaps = 39/488 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P+L   LS       + ++  V+  +  ++ G++FVAI G + DGH F+P+  A+GA A
Sbjct: 3   LPDLAAALSTPTPPLPDVEVRGVTHHAAWVEPGFLFVAIRGARFDGHSFLPEVAARGAVA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKS 127
           ++       +   A + S  P L V N R  L+  A+ L G HP     ++ VTGT GK+
Sbjct: 63  VLG------EGLPADVASPLPYLSVPNARAALADAAAALAG-HPSRALKVVGVTGTDGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQ 180
           + +   + + + +GL   + G  ST+     D  L       TTP    +   L  L   
Sbjct: 116 TTSWLTRHLLRAAGL---RTGLLSTVGYELPDGVLRHFPAHFTTPEAPQVQTTLRALLEA 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G     +EASSH L   R+ G+      +T+L  +H+D+H T + YF  K +L E    +
Sbjct: 173 GGEAAVLEASSHALALDRVRGVDWDVAVWTHLSSEHLDFHGTLENYFADKRKLIE----R 228

Query: 241 ESPAIIYADDAYSKE---VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              A++  DD ++ +   V  +            +Q + I  ++   +H +    +    
Sbjct: 229 APFAVLNVDDPWTAQLRGVAPQETTYSAENQHADWQARHIE-ERATGLHFQVASPLG--- 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +F    P+ G F V NAL        +G     ++E L     VPGR E V   +   R
Sbjct: 285 -EFAAHLPMIGRFNVANALAGMAAAAQLGATVPQLVEGLASFRGVPGRMELVPGGASDPR 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VD+AHT  SLE  L  +R  T GR+ V+ G  GG RD GKR  +G++A  LAD A+ T
Sbjct: 344 VIVDFAHTPPSLEKALTTLRATTGGRLWVLLGSAGGPRDPGKRAPLGEVATRLADHAVFT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +++ R      I  E+  G        F    +R EAIR  I      D +++AGKG E 
Sbjct: 404 EEDCRDTPLWDILREMERGAREAGRNNFTSIEDRREAIRFVIREARPGDTVLLAGKGPED 463

Query: 472 VHIVTNGE 479
             +  NGE
Sbjct: 464 T-LERNGE 470


>gi|302671350|ref|YP_003831310.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
 gi|302395823|gb|ADL34728.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
          Length = 495

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 142/480 (29%), Positives = 227/480 (47%), Gaps = 32/480 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +V +D+R I  G +F+ I G   DGH    +A  + A AIVV       D       
Sbjct: 29  EIKDVVNDNRKISEGSLFICIKGANFDGHSCAMEAANKKAAAIVVE-----HDVELPGDC 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ++ V+NTR  ++ F S  Y  HP   L   G +G     +    I      +  ++G
Sbjct: 84  KIAVIRVENTRYAMA-FISAAYFDHPARKLKTIGITGTKGKTTTTYLIRNMLENAGHKVG 142

Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              TI     +  +    TTP    L + ++ +   G   V +E SS GL  HR  G   
Sbjct: 143 LIGTIEVIIGEEHIHAENTTPESFALQEYMARMVEAGCDSVVMEVSSQGLMLHRTQGFIF 202

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G FTN+  DHI  + H+  + Y + K  LF++        I   DD ++ ++++  H 
Sbjct: 203 DIGIFTNIEPDHIGPNEHKDFEDYMHCKGLLFKQC----RIGICNGDDIHTDDILE-GHT 257

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGK-DFDFLFPLPGEFQVYNALV 317
             C+  + G+ G+ + L+ +   + ++     V    EG  +       PG+F VYNAL 
Sbjct: 258 --CKAYTYGF-GEGLDLRAINLAYIRKPGELGVFFDTEGLINMHAEIRTPGKFSVYNALC 314

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   +G     +   L+   V  GR E V  +     + +DYAH + +L+ +L  +R
Sbjct: 315 AIAVAQELGCTPEEIAPALKDAKV-KGRIEMVKVSDEF-TLMIDYAHNAMALKSLLTTLR 372

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                R+I VFGCGG+R + +R  MG+++   +D  I+T DNPR E+PE I  +I  G+ 
Sbjct: 373 DYHPNRLISVFGCGGNRSKLRRFEMGEVSGKYSDFTIITSDNPRYEEPEDIMNDIETGMK 432

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                +I+  +R EAIR AI+   + D++V+AGKGHE    +   +  M     II+EIL
Sbjct: 433 KTDGKYIKITDRKEAIRYAIDHGEQGDIIVLAGKGHEDYQEIKGVKYPMDERV-IIQEIL 491


>gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 476

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 222/481 (46%), Gaps = 41/481 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I  +SSDSR I+  +IF+A  G + DGH +I  AI  GA  I+    Y+  D +   
Sbjct: 20  DKEIIGISSDSRQIKENYIFLANKGYEFDGHKYIDSAIKNGANTII----YTNDDIN--F 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            S    + V + R  L+  ++ L  Y      ++ VTGT+GK++ A+ +  +  + G   
Sbjct: 74  ESGINYIKVKDQRLALAKISNLLSNYPSKSMRMIGVTGTNGKTTTANLIAFVLNKLGSPC 133

Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   + + +       TTP    L + L     + + +  +E SSHGL   R  GI 
Sbjct: 134 ANIGTDGADLINKTMPTEHTTPEITDLNEILIKAKKENIKNAVMETSSHGLYLKRNYGID 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---SKEVMKRA 260
              G FTNL  +H+D+H+T   YF AKM     LL      ++  DD Y   +KE+ K A
Sbjct: 194 YEYGVFTNLSMEHMDFHKTMDNYFKAKMI----LLNNSKKQVVNLDDDYGKRAKEIFKDA 249

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVA 318
                  +S+    K+          N ++V + +E       F L   G++ +YN+L A
Sbjct: 250 -----LTISINEDSKY-------RAKNIKRVDLGLEFTVNGVKFHLNRFGQYDIYNSLCA 297

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G     + + LE    V  RFEF+  N  G  I VD+AHT  + E + K++  
Sbjct: 298 IAIANDLGYKLEEISKALEDFTGVKSRFEFI-ENKLGINIVVDFAHTPEAFENLFKDLP- 355

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
               +I  V+G  GDR    R  +GKI+      +++T D+P+ +  E I  +I  G+  
Sbjct: 356 -KDKKIYAVYGINGDRTYDIRKAVGKISAKYGVFSVITTDDPKFDTFENISQQIKEGVDE 414

Query: 439 FIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              KG      +R EAI+  I    K D + + GKG E         K    + + IRE+
Sbjct: 415 --NKGECIIIKDRKEAIKYGISHAKKGDFVFMLGKGEEKFLKFNGNIKTYYSERETIREV 472

Query: 493 L 493
           L
Sbjct: 473 L 473


>gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 516

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 218/481 (45%), Gaps = 37/481 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +FVA+ G    G  F   A ++GA A++       +  +     + P ++V
Sbjct: 46  DNRAVLGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDP----EGMAFLTDLDIPAIIV 101

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSG-LSSFQIGPTST 152
            +        A+  + +  + + A   T       +   ++ +  R G LSS      + 
Sbjct: 102 PDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSLVGTVEAA 161

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +        +TTP    L    +    + V H+ VE SSH L   R+D +      FTNL
Sbjct: 162 VGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFACVGFTNL 221

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR---VLS 269
            +DH+DYH T + YF  K  LF +   +    +I  D  + + + ++   +G      LS
Sbjct: 222 SQDHLDYHGTMEQYFQTKASLFSQ--QRSDRQVIIVDGVWGQRLAEQLERSGQHDFVTLS 279

Query: 270 V-----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-----LVAA 319
           +      +QGK I L         +    + +GK+      +PG F   NA     +V  
Sbjct: 280 LTGRPADWQGKIIELDGGFT----ELRLRAFDGKEASVQVRMPGTFNAINAALAIVMVVT 335

Query: 320 GLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           GL  +       +L HL    +   VPGR E +    R   + VD+AH  +S +++L  +
Sbjct: 336 GLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPR---VIVDFAHNPDSTKVLLDTM 392

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R  T GR+++V G  G RD GKRPI+G+IA +LAD   VTD +   E+P  IR +++ G+
Sbjct: 393 RISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMAGM 452

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            G    F+E   R  AI  AI     +D +V+ G+GHE++     G+  +  D  + RE 
Sbjct: 453 KGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDLD-DRVVAREA 511

Query: 493 L 493
           L
Sbjct: 512 L 512


>gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
 gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
          Length = 474

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 216/463 (46%), Gaps = 51/463 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVG----NKE--DGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +  ++ DSR +Q G+IFVAI G    N+   +GH FIP+AIA+GA  IV       QD  
Sbjct: 17  VTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARGAVGIV-----GTQDLE 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             +    P L V + R  L+  A+  +G HP  +L + G +G     +          L 
Sbjct: 72  LPV----PYLKVADPRSALADLAAAFWG-HPAKMLQLVGITGTKGKTTVTVLAHH---LL 123

Query: 144 SFQIGPTSTISS---------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            F   P   IS+         +      TTP    + + L+     G     +E SSH L
Sbjct: 124 QFAAPPAGRISTVGVRVGEEEYFLSGHFTTPEAPQVQEMLARFVKAGCKQAVLEVSSHAL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              R+ G++   G +TNL  DH+D+H + + YF AK    + LL +    ++  +D Y  
Sbjct: 184 ALERVRGLEYEVGVWTNLSEDHLDFHGSMENYFAAK----QTLLRRSRFGVLNREDPYYP 239

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           ++    H       S G  G +     L+    +H + +  +      F    P+ G+F 
Sbjct: 240 QLPGLTH------WSYGMGGDWQAENLLETAGGLHFRVRSPLGA----FKVSLPMIGKFN 289

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NAL A      +G+    +   LE    VPGR + V       R+ VD+AHT +S+  
Sbjct: 290 ALNALAAMAAAARLGVKIPELQAGLEFFPGVPGRMQIVQATPF--RVIVDFAHTESSVRA 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI--- 428
            L+ +R  T GR+++V G  G+R   +R  +G+ A +LAD+A+ T+++ RSE+ E I   
Sbjct: 348 ALETLRPTTRGRLVIVVGAAGERGAERRTGIGRAAGELADLAVFTEEDHRSENLEAILQT 407

Query: 429 RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            AE    + G +    +R EAIR AI      D L++AGKGHE
Sbjct: 408 MAESAKAVGGQYALIPDRREAIRWAIAHAQPGDTLLLAGKGHE 450


>gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
 gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
          Length = 514

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 148/475 (31%), Positives = 224/475 (47%), Gaps = 52/475 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  ++ DSR + + ++F A+ G   DG  FI  AI QG+  IV ++     D     
Sbjct: 34  EVEILGLTYDSRCVLSRFVFFALPGLHFDGQKFIESAIQQGSNVIVHTNDIDSYD----- 88

Query: 87  RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
             N   + +D  N ++F+S F+   Y +  +   I+ VTGT GKSSV  ++  + +  G+
Sbjct: 89  -PNVTYIKIDACNIKRFMSNFSHIFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGV 147

Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              ++G  ST+  F +D          R +TP    +   LS +    V +  VE++SHG
Sbjct: 148 ---KVGFISTV--FFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVESTSHG 202

Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           LD    RL  I       TN+  +H+++H T Q Y NAK+ LF          I+  DD 
Sbjct: 203 LDARTSRLIDISYSVAVLTNISHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIVNMDDN 262

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKD--FDFLFPLP 307
                +    NA  RV +   + K  +     +  N+Q   I  E   KD  +D    L 
Sbjct: 263 NFSVFL----NAINRVYTYSLENK--NADFFVSKINEQMGFIEFEFYHKDVKYDARVNLT 316

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYVDYAH 364
           G F V N  V A L +   + +  + E +EKL  V G   R + V        I +DYAH
Sbjct: 317 GSFNVEN--VMAALIVVSQVMNIHISELIEKLVNVEGLCGRMQGVDFGQDFSLI-IDYAH 373

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T  +   I    + +   R+I VFG  G+RD  KR + G+IA   +DI I+ D++PRSED
Sbjct: 374 TPGAFLKIFPMFKRLAKNRLISVFGSAGERDTFKRKLQGEIADRYSDIIILCDEDPRSED 433

Query: 425 PEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             +I  +I  GI G        FI   +R  AI  A+++    D++V  GKGHE+
Sbjct: 434 SMQIIRDIAEGISGKTLNKDLFFIP--DRRSAIEKAVDIAYAGDLVVTLGKGHES 486


>gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 499

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 208/424 (49%), Gaps = 31/424 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + IN ++  S+ +  G +F +I G  EDGH +I +AI +GA A+  +S   L+  S T  
Sbjct: 22  QTINHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGAVAVFGTSIEELRLLS-TQY 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S+   L VD+ RK ++ F+   +    E I  + VTGT+GK++VA++V+ +     L + 
Sbjct: 81  SHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRSLLTLLKLPTG 140

Query: 146 QIGPTSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG T   SS      + +  TTP  + L K    L ++G     +E SS  +DQ R++ 
Sbjct: 141 SIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAIDQQRVED 200

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I       TNL  +H++YH+T + Y   KM+LF++       A+I  DD    + + R  
Sbjct: 201 IYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQ----AKHAVINIDDQDMGKDLSR-- 254

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQV 312
                 L  G +  +  L    A    + +T+   G  FD L+         P+ G++ +
Sbjct: 255 ------LFEGPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAVPVYGDYNI 308

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEM 371
            N L A G  +        ++  L +L    GRF+ V G N++  ++ +DYAHT  +L  
Sbjct: 309 ANVLAAIGTALHFEYHIEDIISVLPQLESPEGRFQVVEGPNNQ--KVILDYAHTPVALTR 366

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +++ ++ +   ++IV+    G RD  K P M ++    AD  IVT D+P   DP  I  +
Sbjct: 367 LVEEVKKMEYNQLIVMIAGIGIRDFNKMPKMARVIEGKADEIIVTVDHPGHHDPNVIVDQ 426

Query: 432 IIHG 435
           ++ G
Sbjct: 427 VMTG 430


>gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
 gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis
           str. Sterne]
 gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
          Length = 401

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 184/383 (48%), Gaps = 27/383 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L    S      A++ ADD  S E 
Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 250

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +       +  +S    + +    L G F VYNA
Sbjct: 251 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 309 LAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367

Query: 376 IRTITSGRIIVVFGCGGDRDQGK 398
           IR    G+II VFGCGGDRD  K
Sbjct: 368 IREFAKGKIITVFGCGGDRDAKK 390


>gi|315639117|ref|ZP_07894284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
 gi|315480821|gb|EFU71458.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
          Length = 428

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 199/403 (49%), Gaps = 54/403 (13%)

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           ++    I+ V+ T+K L +            I+ +TGT+GK++ A+ +  I    G   F
Sbjct: 37  VKKGAKIIDVEETKKLLGI-------DETIKIIGITGTNGKTTTAAAIYSILLDLG---F 86

Query: 146 QIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSS---QGVTHVSVEASSHGLDQHR 198
           + G   T  +F  D ++     T SPI   K L YL     +G     +E SSH L Q+R
Sbjct: 87  KCGLCGTRGAFINDEKIDEKSLTTSPIL--KTLEYLQKATLKGCEFFVMEVSSHALVQNR 144

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++G++  A  FTNL +DH+D+H + + Y  AK   F +    ES   I  D  +    +K
Sbjct: 145 IEGLEFAAKIFTNLTQDHLDFHGSFENYKKAKESFFTD----ESLKFINKDAFHINFNVK 200

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A+       + G +    +  K  A+ N+    +  + + F     L G F +YN L+A
Sbjct: 201 NAY-------TYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYN-LLA 252

Query: 319 AGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIY----VDYAHTSNSLEMIL 373
           A  C+     + LV  +L  L   + G   F G   R  +I     VD+AHT + +E +L
Sbjct: 253 ASACV-----NELVKPNLADLERAISG---FGGVCGRVEKIVEGVIVDFAHTPDGIEKVL 304

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +++   +  +IVVFG GGDRD+ KR +MGK+    A  AI+T DNPRSED   I  EI+
Sbjct: 305 DSLK---NKNLIVVFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEIL 361

Query: 434 HGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            G      P  IE  NR  AI  A+E+  + D++++ GKG ET
Sbjct: 362 QGFEDKNTPLMIE--NRELAIYKALELKKEDDLVIILGKGDET 402


>gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
 gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
          Length = 508

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 139/476 (29%), Positives = 223/476 (46%), Gaps = 42/476 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G + DGH FI  AI +G+  IV S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNVIVCSRD---MDFYSP--- 80

Query: 89  NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VD  N RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGV-- 138

Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-- 195
            ++G  ST+       S      R +TP    +   LS +    V +  +E++SHGLD  
Sbjct: 139 -KVGFISTVFFDDGNGSLIKNPYRQSTPESTEIHLFLSNMVKNNVQYAILESTSHGLDLK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253
             RL  +   A  FTN+G +H+++H T Q Y NAK+ LF  +       +I  DD Y   
Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYYSD 257

Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K++     +     +   FI  K      +  +     +G  +     L G F V
Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKI-----DSTRFEFYHKGVKYFANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I   D   +++ L  +  + GR + V    +   + +DYAHT  +   
Sbjct: 313 ENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL-GQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +   + R+I VFG  G+RD  KR + G+IA   +D+ ++ D++PR E+   I  +
Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIVLCDEDPRGENSMYIIKD 431

Query: 432 IIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I  GI          FI   +R  AI  AI +    D++V  GKGHE   I  N E
Sbjct: 432 IAKGIVNKVVNQDLFFIP--DRRLAIEKAISLARAGDLVVALGKGHENSIIYKNKE 485


>gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
 gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
          Length = 508

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 142/478 (29%), Positives = 225/478 (47%), Gaps = 46/478 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S      DF +    
Sbjct: 27  EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRD---MDFYSP--- 80

Query: 89  NTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           N   + VDN   RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + ++ G+  
Sbjct: 81  NVTYIKVDNFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGI-- 138

Query: 145 FQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            ++G  ST+  F  D          R +TP    +   LS +    V +  +E++SHGLD
Sbjct: 139 -KVGFISTV--FLDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGLD 195

Query: 196 QH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +   A  FTN+G +H+++H T Q Y NAK+ LF  +       +I  DD Y 
Sbjct: 196 LETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYY 255

Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K  +K++     +     +   FI  K      +  +     +G  +     L G F
Sbjct: 256 ADFKNAVKKSFTYSLKSNKADFFVSFIDEKI-----DSTRFEFYHKGVKYSANVSLLGSF 310

Query: 311 QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            V N + A  L   I   D   +++ L  +  + GR + V    +   + +DYAHT  + 
Sbjct: 311 NVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL-GQNFSVIIDYAHTPGAF 369

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +    +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I 
Sbjct: 370 SKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIILCDEDPRGENGMCII 429

Query: 430 AEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            +I  GI          FI   +R  AI  AI +    D++VV GKGHE+  I  N E
Sbjct: 430 KDIAKGIVNKVINQDLFFIP--DRKLAIEKAISLARAGDLVVVLGKGHESSIIYKNRE 485


>gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 391

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 184/383 (48%), Gaps = 27/383 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 12  KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 66

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 67  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 121

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 122 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 181

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256
                  FTNL +DH+DYH T   Y + K  LF  L    S      A++ ADD  S E 
Sbjct: 182 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 240

Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            K+  +A   V++ G + G  +  K +       +  +S    + +    L G F VYNA
Sbjct: 241 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 298

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  
Sbjct: 299 LAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 357

Query: 376 IRTITSGRIIVVFGCGGDRDQGK 398
           IR    G+II VFGCGGDRD  K
Sbjct: 358 IREFAKGKIITVFGCGGDRDAKK 380


>gi|295091959|emb|CBK78066.1| UDP-N-acetylmuramyl-tripeptide synthetases [Clostridium cf.
           saccharolyticum K10]
          Length = 487

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 207/451 (45%), Gaps = 26/451 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  DSR      +FV + G   D H FIP  +  G + +VV    S       I  +  
Sbjct: 24  DVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKILVVEREVS------EIPEDVT 77

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIG 148
           ++ V+N R  L+L ++  +G +P   +   G +G     +    ++ I +  G     IG
Sbjct: 78  VIRVENGRNALALLSAARFG-YPAGKMVTIGVTGTKGKTTTTYMIKSILEACGKKVGLIG 136

Query: 149 PTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
               +     +A  N  TTP    L +    +   G  ++ +E SS     HR+DG+   
Sbjct: 137 TNGAVIGDKHYATKN--TTPESYLLEQYFDEMVKAGCEYMVMEVSSQSYLMHRVDGLTFD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G F N+  DHI     + A F   +   ++LL     AI+  DD + +E+++ A  A  
Sbjct: 195 YGLFLNISNDHIG--PGEHADFEEYLHYKKQLLKNCKTAIVNEDDEHFEEIIRGAQ-AKI 251

Query: 266 RVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              S+     F    ++ V        V   +   + +    +PG F   NAL +  LC 
Sbjct: 252 HTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKVNVPGRFNAANALASVALCS 311

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            + +  A V   LE L +  GR E V  +S+   I VDYAH + S+E +LK +R     R
Sbjct: 312 FLDLPKAKVAHGLEHLKI-DGRMEIVYKSSKMTVI-VDYAHNAVSMESLLKTLRDYKPKR 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GF 439
           ++ VFGCGG+R + +R  MG+I  +LAD  I+T+DN R ED   I  +I  G+      +
Sbjct: 370 LVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDNSRYEDVNDILTDIKVGLSMTSGTY 429

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           IE  +R  AI  AI   +  D++ + GKGHE
Sbjct: 430 IEIPDRRRAIEFAISHAHDGDMIAIIGKGHE 460


>gi|149183982|ref|ZP_01862354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848308|gb|EDL62586.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 413

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 207/401 (51%), Gaps = 26/401 (6%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC----QRSGLSS 144
           ++VV +T K ++   ++ Y  +P    N++ VTGT+GK++V + +  I     QRS LS 
Sbjct: 3   LVVVKDTFKAMAQLVNKYY-DYPSLKMNVIGVTGTNGKTTVTNLIHSILRNDGQRSALSG 61

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG       F  +N  TT   +   + +     + + ++ +E SSHGL   RL G+  
Sbjct: 62  -TIGFDLDGELFPSEN--TTCDVMTNQEMIQKALDRDIENMVLEVSSHGLSLGRLWGVDF 118

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDA-YSKEVMKRA 260
              +FTNL  DH+DYHQT + Y  AK  LF +L   L     A++ +DD  Y +     A
Sbjct: 119 DVVTFTNLSHDHLDYHQTMEHYGYAKGLLFSQLGQNLANPKYAVLNSDDEWYERYSTMTA 178

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVA 318
           H     V+S G +  +   K     +     T +++  +  F+    L G+F VYN L A
Sbjct: 179 H----EVISYGLE-TYADFKAENIQYYNDLTTFTLQSPEGVFEVESKLLGKFNVYNILAA 233

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                A G+    ++  ++ L  V GR E V +++    +Y+DYAHT +++E  ++++  
Sbjct: 234 MATLFAKGMSVEKLVTIIKDLPPVSGRMEKVHSDAPLS-MYIDYAHTPDAIENAIQSVLP 292

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
               +II + G GG+RD+ KRP M + A  +AD  ++T D+PR E  + I  ++  G+  
Sbjct: 293 FKENKIIFLVGTGGNRDKSKRPSMAEKA-SIADYVVLTTDDPRYESYDSIVNDLGKGMRH 351

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             +   G+R EA++ A+++    D+++ AGKGHE   I+ N
Sbjct: 352 GNYALIGDREEAVKHAVDVSEPGDIIIFAGKGHEDYQIIEN 392


>gi|57505613|ref|ZP_00371540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter upsaliensis RM3195]
 gi|57016160|gb|EAL52947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter upsaliensis RM3195]
          Length = 428

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 199/403 (49%), Gaps = 54/403 (13%)

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           ++    I+ V+ T+K L +            I+ +TGT+GK++ A+ +  I    G   F
Sbjct: 37  VKKGAKIIDVEETKKLLGI-------DKTIKIIGITGTNGKTTTAAAIYSILLDLG---F 86

Query: 146 QIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSS---QGVTHVSVEASSHGLDQHR 198
           + G   T  +F  D ++     T SPI   K L YL     +G     +E SSH L Q+R
Sbjct: 87  KCGLCGTRGAFINDEKIDEKSLTTSPIL--KTLEYLQKATLKGCEFFVMEVSSHALVQNR 144

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++G++  A  FTNL +DH+D+H + + Y  AK   F +    ES   I  D  +    +K
Sbjct: 145 IEGLEFAAKIFTNLTQDHLDFHGSFENYKEAKESFFTD----ESLKFINKDAFHINFNVK 200

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A+       + G +    +  K  A+ N+    +  + + F     L G F +YN L+A
Sbjct: 201 NAY-------TYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYN-LLA 252

Query: 319 AGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIY----VDYAHTSNSLEMIL 373
           A  C+     + LV  +L  L   + G   F G   R  +I     VD+AHT + +E +L
Sbjct: 253 ASACV-----NELVKPNLADLERAISG---FGGVCGRVEKIVEGVIVDFAHTPDGIEKVL 304

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +++   +  +IVVFG GGDRD+ KR +MGK+    A  AI+T DNPRSED   I  EI+
Sbjct: 305 DSLK---NKNLIVVFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEIL 361

Query: 434 HGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            G      P  IE  NR  AI  A+E+  + D++++ GKG ET
Sbjct: 362 QGFEDKNTPLMIE--NRELAIYKALELKKEDDLVIILGKGDET 402


>gi|269795579|ref|YP_003315034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097764|gb|ACZ22200.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 535

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 171/329 (51%), Gaps = 24/329 (7%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           +RLTTP    L   L+ +   GV  +++E SSH + Q R+DG+      FTNL +DH+D+
Sbjct: 178 SRLTTPDAATLQGVLATMREDGVDVLAMEVSSHSISQRRIDGLHFDVAGFTNLSQDHLDF 237

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H     YF AK  LF     +    ++  DD + + +   A +     LSV + G     
Sbjct: 238 HGDLDRYFAAKAELFTAERARR--GVVVVDDEWGRRLAATA-DIPTVTLSVEHSGGPQSD 294

Query: 280 KKVCAIH-NKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             V  +H      T SV   +G+       LPG F V NA +A  + +  GI+   V   
Sbjct: 295 WTVRDVHAGASGSTFSVVHRDGRSVRARTALPGSFNVANAALAIVMVVESGIEVGTVTAA 354

Query: 336 LEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           LE        VPGR E V   S   R+ VD+AH  ++L + L  +R  T+GR++VVFG  
Sbjct: 355 LEAAGGLSPAVPGRMEQV---SDSPRVVVDFAHNPDALALALAALRPTTAGRLVVVFGAT 411

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PG----FIE 441
           G+RD  KRP+MG+IA++ AD+ +VTDD+P  E  + IRAE++ G       PG     +E
Sbjct: 412 GERDTTKRPVMGRIAVEGADVVVVTDDDPHGEAADGIRAEVLAGAREAAAQPGCDVDVLE 471

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
              R  AIR A+   + +D ++VAG+GHE
Sbjct: 472 AAPRALAIRAAVLAADDEDTVLVAGRGHE 500


>gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
 gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
          Length = 504

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 226/469 (48%), Gaps = 29/469 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATI 86
           K+N +S DSR I  G +FVAI G   DGH +I + IAQGA  ++ S    Y++QD +  +
Sbjct: 28  KVNNISQDSRKITKGDVFVAIKGYTVDGHNYIEKVIAQGAALVIASRYEDYNVQDCAVVV 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                I       K  S+ A ++   +  + +AVTGT+GK+S+++ V  + +  G SS  
Sbjct: 88  VKEHEI------EKIASMLAKKINSGNKVHTVAVTGTNGKTSISTLVHNMLRELGESSSY 141

Query: 147 IGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           IG     + F +++        TTP  + L   +  L  + + +++ EASSH +   R+ 
Sbjct: 142 IGT----NGFGKNDDEPIYLGNTTPDVVTLHNKIGELHREDIKNLAFEASSHAMVLGRIY 197

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVM 257
            + +    FTNL  +H+D+H   Q Y   K  LF  L    S A   ++  DD Y   + 
Sbjct: 198 NVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFSTLGNNFSEAKYGVLNKDDEYYSIMS 257

Query: 258 KRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYN 314
           K  ++       +     F     K  + + + + T +++    +++      G+F V N
Sbjct: 258 KCLYHQEINYSVLDEAADFYAYNIKQYSENGRYKTTFTLKSPEGEYECQTNYIGDFMVSN 317

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G     ++  L  L  + GR E +G +     I  D+AHT +  + +L+
Sbjct: 318 VLAALIAVWLKGYSVEKLVNILPNLGALYGRMEILGED-LPIDIISDFAHTPDGYKKLLE 376

Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             R I  + R +++ G GG RD  K P++G+I +  AD  ++T D+PR ED E +   I 
Sbjct: 377 ATREIRKNKRTLLLTGMGGGRDISKGPLIGEI-ISEADYVVITTDSPRDEDVEVLMGTIE 435

Query: 434 HGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
            G+    + +   R +A++  I++    DV+++A KG E   I+  G+K
Sbjct: 436 KGMTHKNYEKVWFRTDAVKRIIQLAEPGDVVILASKGREDYEILRGGKK 484


>gi|153809827|ref|ZP_01962495.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
 gi|149834005|gb|EDM89085.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
          Length = 491

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 229/459 (49%), Gaps = 33/459 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++++ V  DSR ++   +F+ I G   DGH F+P  I +GA+ +VV       +     
Sbjct: 20  EQEVSTVVYDSRKVEENSLFICIRGAVVDGHKFVPDVIRKGAKTLVVEEEVEAPE----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
             +  ++ V +TR  ++  ++  +G HP   L   G +G     +    V+ I + +G  
Sbjct: 75  --DVTVIKVADTRYAMAFISAAYFG-HPAEKLKTIGITGTKGKTTTTYMVKSILENAG-- 129

Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            +++G   TI +   +  +    TTP    + +    +   G   V +E SS GL  HR 
Sbjct: 130 -YKVGLIGTIEAIIGEESIPACNTTPESYLVQEYFRKMVDAGCDCVVMEVSSQGLMLHRT 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G     G FTN+  DHI  ++ +   F+  +R    LL +    I+  DD + + +++ 
Sbjct: 189 QGFVFDYGIFTNIEPDHIGPNEHKD--FDDYLRCKSMLLQQCRVGIVNRDDEHFERIIE- 245

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNA 315
            H   C++ + G+  +  +  +    +  K  + IS + K   +F     +PG+F +YN+
Sbjct: 246 GHT--CQLETYGFSPEADLRAEDAHMVGGKGYLGISYQLKGLMEFPVEIDIPGKFSIYNS 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +C    +    +++ L K+  V GR E +  +     + +DYAH + +LE +L  
Sbjct: 304 LTAIAICRHFNVSQENIIKAL-KVARVKGRIEVIKVSDEF-TLMIDYAHNAMALESLLTT 361

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNPR E+P+ I  +I  G
Sbjct: 362 LREYHPHRLVCLFGCGGNRAKSRRYEMGEVSGRLADLTIITSDNPRFEEPQDIIDDIKIG 421

Query: 436 IP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I      ++E  +R EAI  AI      D++V+AGKGHE
Sbjct: 422 ISKTDGKYVEICDRKEAIAYAIHHGEPGDIIVLAGKGHE 460


>gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 431

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 188/392 (47%), Gaps = 31/392 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR- 87
           +I  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A+       L D S   R 
Sbjct: 48  EITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAAAV-------LTDESGAERA 100

Query: 88  --SNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGL 142
             +  P+LV +N R  +   A+ +YG HP + L    +TGTSGK++ A  V+   + +G 
Sbjct: 101 AATGLPVLVTENPRGRMGELATEIYG-HPGDDLLQIGITGTSGKTTTAYLVEGGLKAAGR 159

Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           S+  IG   T+     D R+    TTP    L    + +  +G   V++E SSH L   R
Sbjct: 160 STGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGADAVAMEVSSHALVLGR 216

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +DG       F NL  +H+++H   + YF AK +LF     +E  A++  DD Y + ++ 
Sbjct: 217 VDGCVFDIAVFNNLSPEHMEFHSDMEDYFQAKAQLFTPRRSRE--AVVNFDDEYGRRLVD 274

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            A        + G+       + V    H      +   G+      PLPG F V N L 
Sbjct: 275 EATVPVTTFSAEGHPDADWRAEDVEVGTHGSTFTAVGPAGERVRAQAPLPGPFNVANTLA 334

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILK 374
           A       G+D     + +  +  VPGR E V      G+ Y   VDYAH ++++E +L+
Sbjct: 335 AVVTLAVAGLDPQTAADGIAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLR 390

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++R +T G++ +V GCGGDRD+ KR  MG  A
Sbjct: 391 SLRKVTKGKVHIVLGCGGDRDRTKRGPMGAAA 422


>gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
 gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
          Length = 493

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 215/461 (46%), Gaps = 34/461 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++ ++  DSR I    +FV +VG   DGH +IP A+ + A  IV+      ++ +A I
Sbjct: 20  ETEVRDIIYDSRKIAPETMFVCMVGAVTDGHKYIPDAVEKEASVIVLEK----EEEAAQI 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N  +L V++ R  L+L ++ L+  HP   L   G +G     +    I +   ++  +
Sbjct: 76  PENITVLKVESARLALALMSAALF-DHPARKLVTIGLTGTKGKTTTTYMIKKVLEMAGKK 134

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI +   +  L    TTP    L +  + +   G  +V +E SS GL   R  GI
Sbjct: 135 VGLIGTIGAMIGEEHLPSKNTTPESYELHRMFAAMVEAGCEYVVMEVSSQGLKLDRTAGI 194

Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G FTNL  DHI    H + + Y   K  LF +        I+ ADD +   ++K  
Sbjct: 195 LFDYGIFTNLSPDHIGPAEHASFEEYMECKSLLFRQC----RIGIVNADDEHVDGILK-G 249

Query: 261 HNAGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           H    +  S   +         FI+      +H      +  + K       +PG F VY
Sbjct: 250 HTCEVKTFSAEREADLMASDIGFINEDGKLGMHFNVTGCMDCQAK-----VHIPGRFSVY 304

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N++V   +C   GI    +LE L K+ V  GR E +   S+   + +DYAH   S   +L
Sbjct: 305 NSMVTMLVCHLAGISDEAILEGLSKVQV-KGRVEMLPV-SKDYTLIIDYAHNEVSTRSVL 362

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +      R+I V+G GG+R + +R  MG++  ++AD+ ++T DNPR E+   I  +I 
Sbjct: 363 TTLMEYHPKRLICVYGGGGNRSKLRRYDMGEVTGEMADLCVLTCDNPRDEEIRDINNDIK 422

Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            G+      +IE  +R EAI   ++     D++V+ GKGHE
Sbjct: 423 VGLARSNGKYIEIDDRKEAIAYCMKNAKPGDMIVLLGKGHE 463


>gi|223038509|ref|ZP_03608803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
 gi|222880366|gb|EEF15453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
          Length = 430

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/390 (33%), Positives = 190/390 (48%), Gaps = 37/390 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ A+ +       G   +  G   T  +F  + R     LTT     + 
Sbjct: 61  IIGITGTNGKTTTAAAICATLLNLG---YGCGLCGTRGAFVNNERIDDKALTTSE---IL 114

Query: 172 KALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           + LSYL   S +G  +  +E SSH + Q R++ +      FTNL +DH+DYH T + Y  
Sbjct: 115 RTLSYLKAASERGCEYFVMEVSSHAIAQKRIESLDFAMKIFTNLTQDHLDYHGTFEEYAR 174

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K   F +    ++P +I  DD     +     NA    L+              ++   
Sbjct: 175 VKSEFFAD----DAPKLINIDDRGG--IKFNPANA----LTYALHANADFAPGEYSLEGG 224

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRF 346
            + T+    +       L GEF +YN L+AA  C+A   D  L  +     K   V GR 
Sbjct: 225 IRATLKTPRRQMALSSNLHGEFNLYN-LIAAASCVATLTDRPLEQIARAAAKFDGVEGRM 283

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V   SR   + VD+AHT + +E +L  +R     +I+ VFG GGDRD+ KRP MG IA
Sbjct: 284 EVV---SREPLVIVDFAHTPDGIEKVLNALR---HRKIVAVFGAGGDRDRTKRPKMGAIA 337

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              A   +VT DNPRSE+PE I AEI  G+          NR EAI+ A+E L + ++LV
Sbjct: 338 QKYAHRLVVTSDNPRSEEPESIIAEICGGLEMNECVKCIANRKEAIKYALESLTQDEILV 397

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + GKG ET   +  G K    D +++RE+L
Sbjct: 398 ILGKGDETYQEI-KGVKYPFSDKEVVRELL 426


>gi|283797828|ref|ZP_06346981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
 gi|291074516|gb|EFE11880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
          Length = 487

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 206/451 (45%), Gaps = 26/451 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  DSR      +FV + G   D H FIP  +  G + +VV    S       I  +  
Sbjct: 24  DVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKILVVEREVS------EIPEDVT 77

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIG 148
           ++ V+N R  L+L ++  +G +P   +   G +G     +    ++ I +  G     IG
Sbjct: 78  VIRVENGRNALALLSAARFG-YPAGKMVTIGVTGTKGKTTTTYMIKSILEACGKKVGLIG 136

Query: 149 PTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
               +     +A  N  TTP    L +    +   G  ++ +E SS     HR+DG+   
Sbjct: 137 TNGAVIGDKHYATKN--TTPESYLLEQYFDEMVKAGCEYMVMEVSSQSYLMHRVDGLTFD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G F N+  DHI     + A F   +   ++LL     AI+  DD + +E+++ A  A  
Sbjct: 195 YGLFLNISNDHIG--PGEHADFEEYLHYKKQLLKNCKTAIVNEDDEHFEEIIRGAQ-AKI 251

Query: 266 RVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              S+     F    ++ V        V   +   + +    +PG F   NAL +  LC 
Sbjct: 252 HTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKVNVPGRFNAANALASVALCS 311

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            + +    V   LE L +  GR E V  +S+   I VDYAH + S+E +LK +R     R
Sbjct: 312 FLDLPKPKVAHGLEHLKI-DGRMEIVYKSSKMTVI-VDYAHNAVSMESLLKTLRDYKPKR 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GF 439
           ++ VFGCGG+R + +R  MG+I  +LAD  I+T+DN R ED   I  +I  G+      +
Sbjct: 370 LVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDNSRYEDVNDILTDIKVGLSMTSGTY 429

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           IE  +R  AI  AI   +  D++ + GKGHE
Sbjct: 430 IEIPDRRRAIEFAISHAHDGDMIAIIGKGHE 460


>gi|238060252|ref|ZP_04604961.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC
           39149]
 gi|237882063|gb|EEP70891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC
           39149]
          Length = 331

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 157/314 (50%), Gaps = 34/314 (10%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+    +GVT + +E SSH L   R+ G++   G +TN G DH+D+H     YF AK +L
Sbjct: 2   LAAARERGVTALVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHADSADYFAAKAQL 61

Query: 234 FE-----ELLPKESPAI----IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           F+     E+L  + PA+      A  +YS      A      V   GY  +F        
Sbjct: 62  FDGRCAVEVLNHDDPALRPLFTPATVSYSAAGDPTATWYATDVDGEGYAQRFT------- 114

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            H    +T+            LPG   V NAL+A    +  G+D+      +     VPG
Sbjct: 115 AHGPGGLTVPAG-------VALPGRHNVANALLAIAALVGAGVDAPTAAAGVAACGGVPG 167

Query: 345 RFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           R E V   S  G  R  VDYAH ++++   L  +R +++GR+I V G GGDRD+GKRP M
Sbjct: 168 RLELV---SAAGPVRGVVDYAHKTDAIVAALAALRELSAGRLICVIGAGGDRDRGKRPEM 224

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-----IPG-FIEKGNRIEAIRTAIEML 456
           G  A   AD+ +VTDDNPR+E+P  IRAE++ G      P   +E G R  AI  A+ + 
Sbjct: 225 GAAAARGADVVLVTDDNPRTEEPAAIRAEVLVGAYAAATPARIVEVGGRRAAIDEAVRLA 284

Query: 457 NKQDVLVVAGKGHE 470
              DV+ V GKGHE
Sbjct: 285 APGDVIAVLGKGHE 298


>gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus
           sativus]
          Length = 871

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 244/506 (48%), Gaps = 45/506 (8%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+      + +I  +  DSR + AG +FV   G  +     + +A  +GA 
Sbjct: 345 ELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCDGGDDS---VLSEADKRGAV 401

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V S    ++D +   R+   +++V++T   L+  AS  Y +HP   +AV G +G +  
Sbjct: 402 AVVASKEIDIED-TLGCRA---LVIVEDTEAVLAALASSFY-RHPSKDMAVIGVTGTNGK 456

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL----TTPSPIYLAKALSYLSSQGVTH 184
            +    I         + G  S++S +   DN++    T+P  + +   ++ +   G   
Sbjct: 457 TTTTYLIKSLYEAMGVRTGMFSSVSCYVHGDNKMDSTTTSPDAVLVQSMMAKMLHNGTEA 516

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESP 243
           + +EAS   L   + D +      FTNL R+   +  T + Y +A+ +LF  ++ P+   
Sbjct: 517 LVMEASPQELASGKCDEVDFDIAVFTNLAREDSGFRGTDEEYRDAEAKLFARMVDPERHR 576

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFD 301
            ++  DD  +   +++  N    V++   +     +H  K      + QV ++      +
Sbjct: 577 KVVNIDDPNAAFFVQQG-NPDVPVVTFAMENTKADVHPLKFELSLFETQVLLNTPQGILE 635

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G + VD
Sbjct: 636 ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG-VIVD 694

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +A+T + L  +L ++R +   RII V GC G+ ++GKRP+M KIA + +D+ ++T DNP 
Sbjct: 695 HANTPDGLSRLLDSVRELKPRRIITVIGCAGETERGKRPVMTKIATEKSDVTMLTSDNPG 754

Query: 422 SEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNKQ 459
           +EDP  I  +++ GI   +++               G+R+        A+R A+ M  + 
Sbjct: 755 NEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEG 814

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVD 485
           D++VVAGKGHE   +   G+KK   D
Sbjct: 815 DMVVVAGKGHEAYQL--EGDKKEFYD 838


>gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 508

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 209/450 (46%), Gaps = 32/450 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR +  G +F  + G   DGH  +P A A GA A++V            + ++ P L 
Sbjct: 39  TDSRRVVPGSLFACVRGATSDGHRHVPAAAAAGAMALLVDR---------PVETSLPQLC 89

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TS 151
           V + R  L    + L G       ++ VTG++GK++ ++ V+ + + +G  +  +G   +
Sbjct: 90  VPSVRAQLGPLGALLAGDPARALGLVGVTGSNGKTTTSALVRGVLEAAGTCTGVVGTLGA 149

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            ++  +++  LTTP    L + L  +   G     VEASS  LD  R+DG+      FT 
Sbjct: 150 QVAGLSRETALTTPEAPELHELLGAMVEAGARRAVVEASSIALDMGRMDGLAFEVAVFTG 209

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
              DH+D+H T + Y+ +K RLFE    + +  ++  DD + + +   A  A  RV  VG
Sbjct: 210 FEEDHLDHHGTVEQYWASKARLFEP--GRTAAGVVVTDDPWGRRL---ADQAAVRVTRVG 264

Query: 272 YQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                  + +  +   A     +V +  +        PL G   V N   A      +G+
Sbjct: 265 SGADADVRVLGWRTGAA---GTEVLLGDDAGGHRVRSPLVGRVHVTNLAAAWATGRVLGV 321

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRII 385
               +   L  +    GR   +G + R   + VDYAHT  +L   +  +R +T   GR+ 
Sbjct: 322 PPDRIAAGLAAVAPPRGRNTVLGGSGR-PVVVVDYAHTPRALAAAVDTVRDLTGPGGRVH 380

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEK 442
           +V G  G RD+ KR  +G+ A   AD   +T++    EDP  IRAE+   + G P  +  
Sbjct: 381 LVVGARGRRDRYKRQGLGESA-RAADCVWLTNEGSHGEDPAAIRAELRLGLLGTPAAVRT 439

Query: 443 -GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             +R EAI  A+      DV++V G+GHET
Sbjct: 440 VPDRREAITAAVRAAGPADVVLVVGRGHET 469


>gi|307700879|ref|ZP_07637904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
 gi|307613874|gb|EFN93118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
          Length = 516

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 223/466 (47%), Gaps = 48/466 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R ++ G +F+A+ G    G  F P AI++GA+A++  +A              P++ V
Sbjct: 46  DNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVLTDAA----GLDLVANPEVPVITV 101

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTS- 151
            +        A+  +G +P N L + G +G +   +    ++ +  R G  +  +G    
Sbjct: 102 PDVPHAAGRAAAMAWG-NPANHLRLWGVTGTNGKTTTTYLLRHLLHRVGKLAALVGTVEV 160

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            I   +  + +TTP    +    +   +  +  + +E SSH L   R+D ++     F N
Sbjct: 161 AIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHALGLGRVDPLRFRVAGFCN 220

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L  DH+D+H + + YF  K  LF E   +    +I  DD + + + ++    G       
Sbjct: 221 LTHDHLDFHHSMEDYFQTKASLFTER--RSDRQVIIVDDDWGRRLAEQLERMG------- 271

Query: 272 YQGKFIHLKKVCAIHNKQQVTIS-------------VEGKDFDFLFPLPGEFQVYNALVA 318
            Q  F+ L          Q +I+              +GK       +PG F   N  +A
Sbjct: 272 -QHDFVTLS-TTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPGRFNAVNTALA 329

Query: 319 -----AGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
                 GL ++  + +  +L HL    +   VPGR E +    R   + VD+AH   +L+
Sbjct: 330 IVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPR---VIVDFAHNPGALK 386

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L+ +R  T+GR+ +VFG  G RD  KRPI+G+IA +LAD   +TDD+P  EDP+KIRA
Sbjct: 387 SLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIAGELADFTYLTDDDPHEEDPDKIRA 446

Query: 431 EIIHGI---PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           E+  G+   PG ++E   R  AI+ AI+    QD +V+AG+GHET+
Sbjct: 447 EVRAGLEDFPGKYVEIAGRSAAIKQAIQEAKPQDTVVIAGRGHETL 492


>gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
 gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
          Length = 505

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 205/444 (46%), Gaps = 38/444 (8%)

Query: 54  EDGHLFIPQA-------------IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK 100
           E G LFIP+A             I +GA AI+      L           P  +V + R+
Sbjct: 44  EPGDLFIPEAEDHTDLLSRCQAAIERGAAAILTEQLLPLA---------IPQAIVPDARE 94

Query: 101 FLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            L + +  + G     +  + +TG+ GK++ A  V  + + +  +   I       S  Q
Sbjct: 95  ALGIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAASQACGVISSLGYSDSIEQ 154

Query: 159 -DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
              +  TP    LA  +S +         +E SS GL Q R  G  L     TNL   H 
Sbjct: 155 VSTKCATPRSPKLAWWMSRMVKNKAAAAVIEMSSQGLSQRRTAGTSLDIAVLTNLRNVHT 214

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF- 276
             H +   Y  AK R+F  L P    AII ADD  S+++++   +  C  L+VG   +  
Sbjct: 215 SEHGSAANYLAAKKRIFSHLKPG-GLAIINADDHRSRQLLE---SLACPTLTVGLHAEAD 270

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I  + +     +Q+ TI+   +       + G+  V N L A  + +++GI+ + ++  +
Sbjct: 271 ISARVIDRSIAEQRFTITAGDETIQVRSRIIGDAHVANCLSAVAVGLSLGIELSTIVRGI 330

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E +  +PGR + +      G + VD A T ++L + LK  R +T GR+++VF   G++++
Sbjct: 331 ENVTYLPGRMQRLEVGQEFG-VIVDAASTPDTLAIALKTARRVTKGRVLLVFSASGEKNR 389

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG---FIEKGNRIEAIRT 451
             RP++ ++A   AD+A++T  NPR E P +I  +++ G   P    FI    R EAIR 
Sbjct: 390 DARPMLARVAEQGADLAVITSGNPRRESPREITHQLLDGFHRPAKAHFIP--TRAEAIRW 447

Query: 452 AIEMLNKQDVLVVAGKGHETVHIV 475
           A+      D +++ G G  T H+V
Sbjct: 448 ALGHAQPGDCVLICGHGDRTSHLV 471


>gi|28572693|ref|NP_789473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Tropheryma whipplei TW08/27]
 gi|46577004|sp|Q83HJ9|MURE_TROW8 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|28410825|emb|CAD67211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei TW08/27]
          Length = 509

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 141/496 (28%), Positives = 232/496 (46%), Gaps = 42/496 (8%)

Query: 1   MKLQDLIYKDFPELINQ----LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M LQ   Y+   +LI Q    L+    Q+ +R ++ ++  ++ ++   IFVA  G    G
Sbjct: 1   MTLQGKPYR-LSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHG 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F+ Q  +  A        + +Q      RS TPILV D+ R  L + A R+Y      
Sbjct: 60  VEFLDQVQSCAAVLTDNKGRHIMQSDCLPTRS-TPILVTDSPRSDLIVLAKRVYPIDDIR 118

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKAL 174
           I  +TGT+GK+S      ++ +  G+S    G ++TI S A   D+ LTTP    L   +
Sbjct: 119 IFGITGTNGKTSTMHIAAKLLEMMGISC---GISTTIGSSASESDSCLTTPELCQLYARI 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                      ++EASSH +++ RL  I L   +FTNL  +H++ H+  +AY+ AK  LF
Sbjct: 176 FTAKQARADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALF 235

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L  + + A+I  D  Y   + K     GC    +    K+    K+       Q ++ 
Sbjct: 236 --LNKRSNSAVINIDTPYGIRLFK---ETGCSASVISENTKYGLDHKLF-----WQASVR 285

Query: 295 VEGKDFDFLFPLPGEFQVYNAL------VAAGLCIAI------GIDSALVLEHLEKL--- 339
             G  F F    P  ++V +++       A   C+AI      GID   +   L K    
Sbjct: 286 RVGLSFGFTLISPSGYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGL 345

Query: 340 -HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V+PGR E   T +   R+ VD+ HT +++E  L   ++IT GR+I +    G RD  K
Sbjct: 346 KMVLPGRMEVFQTGN-SPRVIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSK 404

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIE 454
           R  +G++    +D   +TD + R E+P +IR  I+ G+ G  ++  +I    +A+  AI+
Sbjct: 405 RKHLGQLCGAYSDKLFITDGHSRFENPAEIRRMILDGVEGPRKQVEQIPSMTQAVLAAID 464

Query: 455 MLNKQDVLVVAGKGHE 470
           +    D ++ +G G +
Sbjct: 465 IAKSDDTVLCSGFGDD 480


>gi|306824884|ref|ZP_07458228.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433095|gb|EFM36067.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 481

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 154/512 (30%), Positives = 238/512 (46%), Gaps = 62/512 (12%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++ G +F A     +  +L    
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNYNEVVFDSISYDSRKVKEGTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI+QG    V    Y +           P++VV++ +K +SL A   YG   E   ILA 
Sbjct: 66  AISQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TGT GK++ A F   I  QR      S +++   G T   SSF      +TP  I L   
Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSF------STPENIDLFDM 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           ++     G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K 
Sbjct: 171 MAQAVKNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290
                LL K S A++   D     V+K           V +Q   F   +    I N + 
Sbjct: 230 ----RLLMKNSRAVVINSDMDHFSVLKE---------QVEHQEHDFYGSQSSNQIDNSKA 276

Query: 291 VTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPG 344
            + S  GK   D+D    L G F   NA+ A   C+ +G      LE+++K      VPG
Sbjct: 277 FSFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LENIKKGIAATRVPG 330

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G 
Sbjct: 331 RME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGL 389

Query: 405 IALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DV 461
           +     +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N++ D 
Sbjct: 390 LLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDA 449

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKG +   IV   ++    D  I    L
Sbjct: 450 VIIAGKGADCYQIVQGKKEDYPGDAAIAERYL 481


>gi|46577003|sp|Q83GN3|MURE_TROWT RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
          Length = 509

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 141/496 (28%), Positives = 231/496 (46%), Gaps = 42/496 (8%)

Query: 1   MKLQDLIYKDFPELINQ----LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M LQ   Y+   +LI Q    L+    Q+ +R ++ ++  ++ ++   IFVA  G    G
Sbjct: 1   MTLQGKPYR-LSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHG 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F+ Q  +  A        + +Q      RS TPILV D+ R  L + A R+Y      
Sbjct: 60  VEFLDQVQSCAAVLTDNKGRHIMQSDCLPTRS-TPILVTDSPRSDLIVLAKRVYPIDDIR 118

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKAL 174
           I  +TGT+GK+S      ++ +  G+S    G ++TI S A   D+ LTTP    L   +
Sbjct: 119 IFGITGTNGKTSTMHIAAKLLEMMGISC---GISTTIGSSASESDSCLTTPELCQLYARI 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                      ++EASSH +++ RL  I L   +FTNL  +H++ H+  +AY+ AK  LF
Sbjct: 176 FTAKQARADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALF 235

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L  + + A+I  D  Y   + K     GC    +    K+    K+       Q ++ 
Sbjct: 236 --LNKRSNSAVINIDTPYGIRLFK---ETGCSASVISENTKYGLDHKLF-----WQASVR 285

Query: 295 VEGKDFDFLFPLPGEFQVYNAL------VAAGLCIAI------GIDSALVLEHLEKL--- 339
             G  F F    P  ++V +++       A   C+AI      GID   +   L K    
Sbjct: 286 RVGLSFGFTLISPSGYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGL 345

Query: 340 -HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V+PGR E   T +   R+ VD+ HT +++E  L   ++IT GR+I +    G RD  K
Sbjct: 346 KMVLPGRMEVFQTGN-SPRVIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSK 404

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIE 454
           R  +G++    +D   +TD + R E+P +IR  I+ G+ G   +  +I    +A+  AI+
Sbjct: 405 RKHLGQLCGAYSDKLFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAID 464

Query: 455 MLNKQDVLVVAGKGHE 470
           +    D ++ +G G +
Sbjct: 465 IARSDDTVLCSGFGDD 480


>gi|139438500|ref|ZP_01772016.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
 gi|133776039|gb|EBA39859.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
          Length = 505

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 142/507 (28%), Positives = 227/507 (44%), Gaps = 67/507 (13%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    +++I   + DSR ++ G +FV     +     ++  AIA GA A V    Y +  
Sbjct: 28  PSASCDQRIEFATDDSRQVRPGTLFVC--KGRAFKREYLLSAIADGAVAYVSEVDYDV-- 83

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI-- 136
                  + P ++V + R+ L++ A   YG HP     + A TGT GKS+ + +++ I  
Sbjct: 84  -------DLPAVIVSDIRRTLAVVADAFYG-HPSGKVKVCAFTGTKGKSTCSFYLRGILA 135

Query: 137 -------CQRSGLSS-------FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                  C R  L++        + GP+          +LTTP    L   +++ +  G 
Sbjct: 136 NEAKLTGCHRPALNTGIEFDDGIEAGPS----------KLTTPESFLLQSRIAHAAEAGA 185

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPK 240
             + +EASS GL   R   I    G+FTN+G DHI    H T + YF +K+++F +    
Sbjct: 186 PWLVMEASSQGLKYERTGKIAFEVGAFTNIGEDHISPIEHPTLEDYFASKLKIFSQ---- 241

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++  D      V++ A     R ++     +   +  +   +    V  +V    F
Sbjct: 242 SRFAVVNLDMDKVDRVLEAASRCE-RTVTFSLTDERADVFALAIRNGDCGVVATVRTPRF 300

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D + P P +F V NAL A      +GI    ++   E +  VPGR E   + S  G+I
Sbjct: 301 TRDIVIPTPVKFNVSNALAAIACAEVLGISEEGIVHGFEGVF-VPGRMELYPSVS--GKI 357

Query: 359 Y--VDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              VD+AH   SLE +L+++R     R + VVFG  G +   +R  MG  A   AD  ++
Sbjct: 358 LGIVDFAHNGMSLETLLRDLRENYPERELAVVFGATGGKGVDRRTTMGIAAGKYADRIVI 417

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGK 467
           T+D+P  ED E I AEI   +     +GN        R+ AI  A+    +  V++V GK
Sbjct: 418 TEDDPGPEDVEDICAEIARNVQA---QGNDNWQIVTDRVAAIEAAVRETVRPAVVIVTGK 474

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           G E   +  NG +    D  I++  L 
Sbjct: 475 GEEERMLRKNGPEPCERDGSILKRTLA 501


>gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
 gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
          Length = 485

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 223/465 (47%), Gaps = 44/465 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  + SDSR++    IF  + G   DGH +I  A+ QGA+ IV S   + +     
Sbjct: 6   EEFKVVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYK----- 60

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGL 142
                  + V+N    L+  A   Y  HP     ++ VTG+SGK+ VA  ++++     L
Sbjct: 61  -HRGVLYIKVNNVLDELNRVADVFY-DHPSYKMTMIGVTGSSGKTVVALMIKEVLSHY-L 117

Query: 143 SSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               IG  +   +   +    TTP  I++ + L+ +  + V  V++E SSHGL   R+DG
Sbjct: 118 KMGYIGTNNIEYAGVIEQCPYTTPETIFMQRHLNDMVKRDVKGVTLEVSSHGLALKRVDG 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTN+  +H+D+H T +    +K +LF  L+ ++  AI+  D+     ++K + 
Sbjct: 178 VHFDIAIFTNVYEEHLDFHGTMEHLMASKAKLF-TLIDEKGYAILNTDEVRFYNLVKDS- 235

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQV 312
              C +L+ G +    H   V A    + + + ++  +FD            P+ G F +
Sbjct: 236 -IRCHLLTYGIE----HKAHVMA----RNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNI 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L      +A+ +    VLE +  +  V GR E +  +     + VDY   + S E +
Sbjct: 287 SNVLAVITSMLALEMPMDQVLESVGYIRGVDGRMELL-EHPYPFTVIVDYCQHAKSFEKV 345

Query: 373 LKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  +++ T+GRII VFG  G ++  KR  +GK+A    +  I+T ++ R ED   I  +
Sbjct: 346 FQFAKSVQTNGRIIAVFGAPGKKNYNKREKIGKLANQYCNQVILTAEDNRDEDIHDICLD 405

Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
               I  ++EK       +R  AI  AIE+ N  D++++ GKGHE
Sbjct: 406 ----IQEYLEKPVSVIIEDRRIAIEQAIEIANHGDIILILGKGHE 446


>gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 614

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 217/470 (46%), Gaps = 32/470 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ ++ DSR +  G +FV + G   DGH F   A+A GA A+V             +  
Sbjct: 114 EVSGIADDSRVVLPGDVFVCVPGATFDGHDFALDAVAAGAVAVVCEGEIE------GLTD 167

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146
             P +VV +  K L   A+  YG   + +  V  T       +   +Q I   + +S   
Sbjct: 168 EIPQVVVSSCAKALGKIAAAFYGSPSQQLTTVGVTGTNGKTTTTHLIQAILAANDVSCGV 227

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   T+     D +     TTP  +   + L+ +   G    ++E SSH L+  R+D  
Sbjct: 228 VG---TVGYEIGDGKYEVPNTTPDALQTQQILAGMIDAGAGACAMEVSSHALELGRVDEC 284

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL RDH+D+H + + Y  AK +LF +L           D   +      A  
Sbjct: 285 DFDVAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTDPARQRAKDRDTFDNAAYFIEAAG 344

Query: 263 AGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            G RV  + Y  +         F+   K+        +TI     +F+ +  + G+  V 
Sbjct: 345 GGDRVPIITYATQPSKEGQADVFVSDVKLALFETT--LTIQTPVGEFEAVCGVVGKINVT 402

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N   A  + +A+ I   ++   +E++  VPGR E +    +   + VDYAHT ++L+  +
Sbjct: 403 NIAAAVAVGVALEIPLDVIAAGVEEMTPVPGRMELI-DEGQPFSVIVDYAHTPDALKRAI 461

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++R      +I VFGCGGDRD  KR  MG+IA   +DI  VT+DNPR+EDP KI  + +
Sbjct: 462 TSLRAANVRNVITVFGCGGDRDASKRKEMGEIADTYSDIVFVTNDNPRTEDPYKILDDTM 521

Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             +     +    +R  AIR AI M  + D +++ GKGHE  +IV  G K
Sbjct: 522 Q-LQNMCRRYVIVDRWYAIRGAIAMAGEDDAVLICGKGHED-YIVVGGNK 569


>gi|218458611|ref|ZP_03498702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli Kim 5]
          Length = 167

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 97/140 (69%)

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           + +  LEKL    GR E VG    G   YVDYAH  ++LE +L ++R  T+GR++VVFGC
Sbjct: 1   VAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDALENVLSSVRPFTTGRVVVVFGC 60

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGDRD+GKRPIMG+IA  LAD+ IVTDDNPRSE+P  IRAEI+   P   E  +R  AIR
Sbjct: 61  GGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCAAEIADRAIAIR 120

Query: 451 TAIEMLNKQDVLVVAGKGHE 470
            A+ ML   D L+VAGKGHE
Sbjct: 121 EAVAMLTSGDTLIVAGKGHE 140


>gi|225028091|ref|ZP_03717283.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
 gi|224954561|gb|EEG35770.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
          Length = 486

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 155/493 (31%), Positives = 236/493 (47%), Gaps = 60/493 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+  V +DSR I+ G +F+ I G   DGH F  +A  +GA  +VV     + D    I+ 
Sbjct: 22  KVTAVVNDSRKIEEGCLFLCIKGAAFDGHKFAAEAAEKGAAVLVVEDEVEVPDSVTVIK- 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 VDNTR  ++L ++  +G   E +  +AVTGT GK++    V+ + + +G    +
Sbjct: 81  ------VDNTRYAMALISAAWFGYPAEELTTIAVTGTKGKTTTTYMVKSLLEEAG---HK 131

Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI        +    TTP    +      ++ +    V +EASS G    R  GI
Sbjct: 132 VGVIGTIEVVIGQEHIPVNNTTPESYDIHSYFRKMAEEDCDVVVMEASSQGFKLDRTAGI 191

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G FTNL  DHI  + H+    Y + K +LF +   +   A I  DD +  E+ K  
Sbjct: 192 MFDYGLFTNLSPDHIGPNEHKDFAEYLSCKAKLFNQC--RYGYANI--DDEHFAEITK-- 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFL---FPL---------- 306
            NA C + + G               N   V   VE  +D DFL   F L          
Sbjct: 246 -NATCPIETFGLN------------ENADLVAYDVELTRDRDFLGVDFGLKGTCEGKISC 292

Query: 307 --PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG F V+NAL A  +   +G+    + + L    V  GR + V T      I +DYAH
Sbjct: 293 GVPGTFNVHNALGAISIAGHMGVTVEQMNKALRHFSV-KGRVQIVPTGYDYTLI-IDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            + +LE IL  +R     R+I +FGCGG+R + +R  MG+++  LAD  I+T DNPR E+
Sbjct: 351 NAVALESILNTLRAYDPPRLISLFGCGGNRSKLRRYEMGEVSGKLADFTIITSDNPRFEE 410

Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P+ I  +I+ G+      +I   +R EAI  A+      D++V+AGKGHET   +   + 
Sbjct: 411 PQAIIDDILIGMKKTDGEYISIIDRHEAISYAMHHAQPGDIVVLAGKGHETYQEIEGKKY 470

Query: 481 KMSVDCDIIREIL 493
            MS + +I++++L
Sbjct: 471 HMSEE-EIVQDVL 482


>gi|28493192|ref|NP_787353.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
 gi|28476233|gb|AAO44322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
          Length = 531

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 220/469 (46%), Gaps = 37/469 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +R ++ ++  ++ ++   IFVA  G    G  F+ Q  +  A        + +Q   
Sbjct: 49  QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLDQVQSCAAVLTDNKGRHIMQSDC 108

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              RS TPILV D+ R  L + A R+Y      I  +TGT+GK+S      ++ +  G+S
Sbjct: 109 LPTRS-TPILVTDSPRSDLIVLAKRVYPIDDIRIFGITGTNGKTSTMHIAAKLLEMMGIS 167

Query: 144 SFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               G ++TI S A   D+ LTTP    L   +           ++EASSH +++ RL  
Sbjct: 168 C---GISTTIGSSASESDSCLTTPELCQLYARIFTAKQARADFFALEASSHAINRGRLGD 224

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I L   +FTNL  +H++ H+  +AY+ AK  LF  L  + + A+I  D  Y   + K   
Sbjct: 225 IVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALF--LNKRSNSAVINIDTPYGIRLFK--- 279

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL----- 316
             GC    +    K+    K+       Q ++   G  F F    P  ++V +++     
Sbjct: 280 ETGCSASVISENTKYGLDHKLF-----WQASVRRVGLSFGFTLISPSGYRVESSISLLGK 334

Query: 317 -VAAGLCIAI------GIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHT 365
             A   C+AI      GID   +   L K      V+PGR E   T +   R+ VD+ HT
Sbjct: 335 AFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTGN-SPRVIVDHGHT 393

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++E  L   ++IT GR+I +    G RD  KR  +G++    +D   +TD + R E+P
Sbjct: 394 VDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDKLFITDGHSRFENP 453

Query: 426 EKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHE 470
            +IR  I+ G+ G   +  +I    +A+  AI++    D ++ +G G +
Sbjct: 454 AEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSGFGDD 502


>gi|291541039|emb|CBL14150.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           XB6B4]
          Length = 516

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 143/477 (29%), Positives = 224/477 (46%), Gaps = 46/477 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDFSAT 85
           I ++   S  ++ G +FV I G   DGH +I  A+  GA A+VV  +  +    + F  T
Sbjct: 23  ITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAFAVVVDESCMVNVRWECFIYT 82

Query: 86  ----------IRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---AS 131
                     +R+    ++ V +TR+ L+  ++  Y  +P   L + G +G       A 
Sbjct: 83  EHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFY-DYPAKKLKIIGITGTKGKTTTAF 141

Query: 132 FVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
               I + +G  +  +G   T +    +    TTP    L + L+ + S G     +E S
Sbjct: 142 LTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSDLQRELAQMVSNGCVCCVMEVS 201

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S G+   R++GI    G F N+  DHI    H +   Y   K RL  +        I+  
Sbjct: 202 SQGIKMQRVEGIFFDIGVFLNIEPDHIGPGEHASFAEYLYCKSRLLRQC----QAGIVNR 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV-EGKDF------ 300
           DD  +++++   H       SV G  G     +K   +   +++T S+ EG+ +      
Sbjct: 258 DDRNTEKIL-FGHTCDIETFSVLGENGVDAPGQKADIV--AERITFSMKEGRLYSHFFTD 314

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +FL  +PG F V NAL A  +     I   +V + L++   VPGR E V  + +   
Sbjct: 315 GKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDALQR-QTVPGRCENVRISDKF-V 372

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   SL  +L  +R    GR++V+FGCGG+R + +R  MG+ A  LAD  I+T 
Sbjct: 373 FLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGNRSKLRRGRMGETAGRLADFTILTS 432

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DNPR EDPE I  +I  GI G    +I   +R  A+  A +   + D++V+AGKGHE
Sbjct: 433 DNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHAREGDIIVLAGKGHE 489


>gi|332654846|ref|ZP_08420588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332516189|gb|EGJ45797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 665

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 216/474 (45%), Gaps = 54/474 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDF 82
           R +++  ++ DSR +  G +F+     ++  H    F+  A  QGA A V     ++   
Sbjct: 31  RNQRVTGLTCDSRQVAPGTLFI-----RKGAHFQTKFLEMARDQGAMACVSQEEDTV--- 82

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQR 139
                   P + + +TRK L+  A R Y  HP     ++ +TGT GKSS A +++ I  R
Sbjct: 83  -----PGLPRIAITDTRKALAPLADRFY-DHPSGKLKVIGITGTKGKSSTAYYMKSILDR 136

Query: 140 SGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              S  + G T  +SS          ++ LTTP P+ L +  +  +  G+ +V++E SS 
Sbjct: 137 YQESQGR-GETGVVSSIDTYDGVERFESHLTTPEPLDLQRHFANAAQTGLEYVTMEVSSQ 195

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            L  HR    +  A  F N+G DHI    H   + YF +K+++F +       + +  D 
Sbjct: 196 ALKYHRSLCTEFAAACFLNIGYDHISPIEHPDFEDYFASKLKIFAQ----AHISCVNLDC 251

Query: 251 AYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +++ V++ A  AG  +++    Y    ++   V     +   T+            +PG
Sbjct: 252 DHAQRVLEAAQAAGAPIITFSQKYPAAQVYASDVHKEDGQILFTLRTPRYTRQMRLTMPG 311

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTS 366
            F V NAL AA LC A+ I    V + L +   VPGR E        GR+   VDYAH  
Sbjct: 312 LFNVENALGAAALCEALDIPEWAVYDGLVRAR-VPGRMEVYANAD--GRVLSIVDYAHNR 368

Query: 367 NSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            S E +  ++R     R + +VFGC G +   +R  +G+ A    D   +T+++   ED 
Sbjct: 369 LSFETLFSSVRAEYPERELAIVFGCPGKKAYDRRHDLGEAAGAWCDRVYLTEEDSGEEDT 428

Query: 426 EKIRAEIIHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             I  EI       +EKG        NR EAIR A+    K  VL++ GKG ET
Sbjct: 429 LDICQEIRPN----VEKGKARCRIIPNRGEAIRQAVLESEKPTVLLLTGKGRET 478


>gi|297625038|ref|YP_003706472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
 gi|297166218|gb|ADI15929.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
          Length = 504

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 145/469 (30%), Positives = 220/469 (46%), Gaps = 42/469 (8%)

Query: 27  ERKINEVSSDSRHIQAG------WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           E ++  +  D+R +         +IFVA  G   DGH F            VV  A   +
Sbjct: 24  EVEVRRIVQDTRELTPSDPATEPFIFVARRGAAVDGHRFA-ARAVAQGAVAVVGEATPEE 82

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQIC 137
             S   R   P + V + R  L+  A+ LYG HP   L    VTGT GK++ A+ +  + 
Sbjct: 83  QASFAWRHAAPYIQVPDDRAALAQLAATLYG-HPSRALFTVGVTGTDGKTTTATLLHHLL 141

Query: 138 Q---RSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           Q    +GL S     T+ +     +  L    TTP    + + L+   ++G+    +E+S
Sbjct: 142 QGDRPTGLLS-----TAGVRLGEAEGGLFGHFTTPEAPEVQRTLAAFVARGLRAAVIESS 196

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHG  Q RLD I    G  TNL  +H+D+H T + Y  AK     +L+ +   +I+ ADD
Sbjct: 197 SHGFAQRRLDAIDYDLGILTNLSPEHLDFHGTFENYRAAKA----QLMARARTSILNADD 252

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                   RA     R+++ G  +       +V  +    +  ++  G+ +    P+ G 
Sbjct: 253 PNYAYFAARAR----RIITYGVVRAATWRATEVRELPGALEWRLTHAGRSYPARLPMVGS 308

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + VYNAL A       G+  A  L  L     VPGR + V T      + VD+AHT  +L
Sbjct: 309 YNVYNALAALAAACEAGVPLAGALARLATFPGVPGRMQVVQTAPFA--LVVDFAHTPPAL 366

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  +R    G++IVV G  G+RD GKR  +G  A   AD+A+ T+++ RSEDPE I 
Sbjct: 367 EKALAALRPQVRGKLIVVVGAAGERDPGKRAPLGAAAARGADLAVFTEEDARSEDPEAIL 426

Query: 430 AEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           A++  G  G        F  + +R  AIR A+ +    D++++AGKGHE
Sbjct: 427 AQLRAGAQGAGGRLGETFWLEPDRRAAIRRAVTLAEAGDLVLLAGKGHE 475


>gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 491

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 223/464 (48%), Gaps = 39/464 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  V+ ++   + G +FVA+ G + DGH FI QA  +GA A++       +     +
Sbjct: 20  EADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVLG------EGLPTGV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143
           ++  P L V + R  L+  A+ L+G HP     ++ VTGT GK++ +   + + + +GL 
Sbjct: 74  QTTLPYLQVPDARAALADLAAELHG-HPSRDLKVVGVTGTDGKTTTSWLTRHLLRAAGLP 132

Query: 144 SFQIGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +   G  ST      D +L       TTP    L   L  L   G     +EASSH L  
Sbjct: 133 T---GLLSTAGYELPDGKLRQFPAHFTTPEAPQLQSILRELLQAGAQAAVLEASSHALAL 189

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKE 255
           HR+ G+   A  +T+L R+H+D+H + + YF  K RL E      +P A++ ADD ++++
Sbjct: 190 HRVRGVAWDAAIWTHLTREHLDFHGSVEGYFADKRRLIE-----AAPFAVLNADDPWTEQ 244

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVY 313
           +         + ++   +G     +      + + ++  V     +F   LP  G F V 
Sbjct: 245 L----RGVAPQEVTYSAEGGAADWQADKVQQSGRGLSFRVHSPLGEFAAELPMIGAFNVA 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMI 372
           NAL A      +G  +  +   L     VPGR + V G      R+ VD+AHT  SLE  
Sbjct: 301 NALAAMAAAAHLGATAEQLQAGLASFGGVPGRMQLVRGPAGPQPRVIVDFAHTPPSLEKA 360

Query: 373 LKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           L+ +R+ T G++ VV G  GG+RD  KR  +G++A   AD AI T+++ R    + I A 
Sbjct: 361 LQTLRSTTGGQLWVVIGSAGGNRDPLKRAPLGEVAGRCADQAIFTEEDHRETPLQDILAA 420

Query: 432 IIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +  G        F    +R EAIR A+      D +++AGKG E
Sbjct: 421 MERGAREGGHSNFRSIPDRQEAIRYAVTQAQPGDTVLLAGKGPE 464


>gi|291536619|emb|CBL09731.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           M50/1]
          Length = 516

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 143/477 (29%), Positives = 224/477 (46%), Gaps = 46/477 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDFSAT 85
           I ++   S  ++ G +FV I G   DGH +I  A+  GA A+VV  +  +    + F  T
Sbjct: 23  ITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAFAVVVDESCMVNVRWECFIYT 82

Query: 86  ----------IRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---AS 131
                     +R+    ++ V +TR+ L+  ++  Y  +P   L + G +G       A 
Sbjct: 83  EHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFY-DYPAKKLKIIGITGTKGKTTTAF 141

Query: 132 FVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
               I + +G  +  +G   T +    +    TTP    L + L+ + S G     +E S
Sbjct: 142 LTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSDLQRELAQMVSNGCVCCVMEVS 201

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S G+   R++GI    G F N+  DHI    H +   Y   K RL  +        I+  
Sbjct: 202 SQGIKMQRVEGIFFDIGVFLNIEPDHIGPGEHASFAEYLYCKSRLLRQC----QAGIVNR 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV-EGKDF------ 300
           DD  +++++   H       SV G  G     +K   +   +++T S+ EG+ +      
Sbjct: 258 DDRNTEKIL-FGHTCDIETFSVLGENGVDAPGQKADIV--AERITFSMKEGRLYSHFFTD 314

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +FL  +PG F V NAL A  +     I   +V + L++   VPGR E V  + +   
Sbjct: 315 GKEEFLLQIPGIFNVSNALAAILVARHFKIAQDVVKDALQR-QTVPGRCENVRISDKF-V 372

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   SL  +L  +R    GR++V+FGCGG+R + +R  MG+ A  LAD  I+T 
Sbjct: 373 FLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGNRSKLRRGRMGETAGRLADFTILTS 432

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DNPR EDPE I  +I  GI G    +I   +R  A+  A +   + D++V+AGKGHE
Sbjct: 433 DNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHAREGDIIVLAGKGHE 489


>gi|167614201|gb|ABZ89704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 381

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 183/374 (48%), Gaps = 31/374 (8%)

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLS 178
           T+G ++V   +  +    G  +  +G   T+ +   DN    + TT S I++   LS + 
Sbjct: 1   TNGTTTVTQLINLLSNLLGQKTATMG---TLGNGFHDNLYPTKNTTSSSIFIHSFLSQVY 57

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +    +++E SSHGL Q+R+  I      FTNL +DH+DYHQ  + Y  AK  LF +  
Sbjct: 58  KKKAKLITMEVSSHGLIQNRVKNIPFYITIFTNLTQDHLDYHQNMEQYEAAKWLLFSK-- 115

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVT 292
            +    I+ A+D Y K+ +K+  N     +++       Y  K+++   +   +N   + 
Sbjct: 116 HQVQKIILNANDKYGKKWLKKLFNYYTVAVTIKNSIQKKYSTKWLNATNIKYYNNYVNIH 175

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +    L G+F V N L++    + +G   + ++    K+  + GR +    N
Sbjct: 176 FESSWGSSEISSCLIGDFNVINLLLSVAALLELGHALSDIVNICNKVQPINGRMQIFTKN 235

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           ++   I +DYAHT ++L+  L  IR      I  +FGCGG++D+ KR IMG IA  +++ 
Sbjct: 236 NKPIFI-IDYAHTPDALQKTLNAIRLHYKRYIWCIFGCGGEKDKTKRAIMGSIAEKMSNQ 294

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I+T+DNPR+E  + I  +I+ G         IP      NR +AI  A        ++V
Sbjct: 295 VIITNDNPRNEKEQNIIQDILSGCQKKNQIFVIP------NRKKAISYAYFKARYNHIIV 348

Query: 464 VAGKGHETVHIVTN 477
           +AGKGHE   I+ N
Sbjct: 349 IAGKGHEEKQIIRN 362


>gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 481

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 150/511 (29%), Positives = 235/511 (45%), Gaps = 60/511 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR ++ G +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSDVFFDNISYDSRKVKEGTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI+QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TGT GK++ A F   I  QR      S +++   G T   SSF      +TP  I L   
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSF------STPENIDLFDM 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           ++     G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K 
Sbjct: 171 MAQAVKNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                LL K S A++   D     V+K              +  F   +    I N +  
Sbjct: 230 ----RLLMKNSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAF 277

Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345
           + S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR
Sbjct: 278 SFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +
Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLL 390

Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462
                +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N++ D +
Sbjct: 391 LNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAV 450

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKG +   IV   ++    D  I    L
Sbjct: 451 IIAGKGADCYQIVQGKKEDYPGDAAIAERYL 481


>gi|15805328|ref|NP_294020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
 gi|8134579|sp|Q9RXL3|MURE_DEIRA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|6457968|gb|AAF09877.1|AE001890_9 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
          Length = 490

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 142/458 (31%), Positives = 213/458 (46%), Gaps = 32/458 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+ ++  +Q G  FVAI G K DGH F+ QA A GA A++       Q       S
Sbjct: 24  EVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFMEQAQAAGAVAVLGEGLADGQT------S 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P L V N R  L+  A+ L G HP     ++ VTGT GK++ +   + + + +GL++ 
Sbjct: 78  PLPYLTVPNARAALADAAAALAG-HPSRELKVVGVTGTDGKTTTSWLTRHLLRSAGLAT- 135

Query: 146 QIGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G  ST+     D  L       TTP    +   L  + + G     +EASSH L   R
Sbjct: 136 --GLLSTVGYELPDGELRHFPAHFTTPEAPQVQDTLREMVAAGAQATVLEASSHALSLDR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + G+      +T+L  +H+D+H T   YF  K +L E    +   A++  DD ++ ++  
Sbjct: 194 VRGVDWDVAVWTHLSSEHLDFHGTLDNYFADKRKLVE----RARFAVLNVDDPWTAQL-- 247

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R    G    S   Q      + +   H+     +     DF    P+ G F V NAL  
Sbjct: 248 RGIAPGETTYSAENQHADWRAQDIEERHSGLHFRVVSPAGDFQAELPMIGRFNVANALAG 307

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 +G  +  +   L     VPGR E V   +   R+ VD+AHT  SLE  L  +R 
Sbjct: 308 MAAAHHLGATALQLQAGLASFRGVPGRMELVPGGATSPRVIVDFAHTPPSLEKALGTLRA 367

Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
            T+G + VV G  GG RD  KR  +G++A  LAD AI+T+++ R    + I  E+  G  
Sbjct: 368 TTAGHLWVVIGSAGGPRDPYKRAPLGEVATRLADHAILTEEDCRDTPLQDILNEMERGAR 427

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                 F+  G+R EAIR A+      D +++AGKG E
Sbjct: 428 EEGRSNFVSIGDRREAIRYAVTHAQPGDTVLLAGKGPE 465


>gi|268680557|ref|YP_003304988.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618588|gb|ACZ12953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 437

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 176/345 (51%), Gaps = 30/345 (8%)

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +D  LTTP  +   K L     +G  +  +E SSH + Q+R+DG+       TN+ +DH+
Sbjct: 109 EDKSLTTPPILQTIKNLKMAVDEGCEYFVMEVSSHAIVQNRIDGLFFALKILTNVTQDHL 168

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           D+H+T   Y   K R FE+    ES  +I +D+          H    R+ +  Y  +  
Sbjct: 169 DFHKTIDEYIAVKSRFFED----ESLKLINSDER---------HIRFNRINAFTYGIEHP 215

Query: 278 HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALV 332
              KV A   K+ ++ ++  K+  +DF   L G F +YN   A+ A  L    G++   +
Sbjct: 216 ATYKVLAYSLKEGISAAIAKKEKVYDFESSLHGFFNLYNLLAAISAVDLLHVAGMEE--I 273

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E +     V GR + V   S+   + VD+AHT + +E +L++++       IVVFG GG
Sbjct: 274 CEAVSHFGGVEGRMQVV---SQDPLVIVDFAHTPDGMEKVLESMK---DKNCIVVFGAGG 327

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAI 449
           DRD+ KRP MG +A   A   IVT DNPRSE+P+ I  EI+ GI        K +R +AI
Sbjct: 328 DRDRTKRPKMGAVAERYAKWMIVTSDNPRSENPDAIIEEIVAGIQRTESLHVKVDRYQAI 387

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             A+ M  K DV+++ GKG ET   V  G K    D +++ EIL 
Sbjct: 388 EEALGMQKKSDVVLILGKGDETYQEVA-GVKYPFDDRNVVLEILA 431


>gi|118475066|ref|YP_891273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
 gi|118414292|gb|ABK82712.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 429

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 128/401 (31%), Positives = 199/401 (49%), Gaps = 54/401 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           ++ +TGT+GK++ A F      RS    +++G + T  +F  D ++     T S I   +
Sbjct: 62  LIGITGTNGKTTTA-FAIAFGLRS--LGYKVGISGTRGAFICDKQIADKGLTTSQIL--E 116

Query: 173 ALSYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            LSY+      G  +  +E SSH + Q+R++G+      FTNL +DH+DYH++   Y   
Sbjct: 117 TLSYIKQAKESGCRYFVMEVSSHAIAQNRIEGLNFALKVFTNLSQDHLDYHKSFSEYARV 176

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMK-------RAHNAGCRVLSVGYQGKFIHLKKV 282
           K   F++    +SP +I  DD   K   K       +  +A   V +  ++G        
Sbjct: 177 KSSFFDD----DSPKLINGDDESIKFNHKNTMIYWLKNSDASFFVENYDFKGGI------ 226

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH----LEK 338
                  +  I  + +  +    L G+F +YN L A G   +I   S + L+     + K
Sbjct: 227 -------KANIKSKNETANLQSHLQGKFNLYNLLAAIG---SIKFLSRVSLQEAADSVRK 276

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V GR E V   S+   + VD+AHT + +E +L     ++   ++VVFG GGDRD+ K
Sbjct: 277 FESVAGRVEIV---SKNPLVIVDFAHTPDGIEKVLD---ALSHDELVVVFGAGGDRDKTK 330

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEM 455
           RPIMGKI    A I+IVT DNPR+EDP  I  +I+ G+          NR +AI+ AIE+
Sbjct: 331 RPIMGKIVQKYASISIVTSDNPRTEDPNSIIDDILAGMQINNSVFSIENRKDAIKKAIEL 390

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
              + V VV GKG E    ++ G+K    D  +++EIL  I
Sbjct: 391 AAGKTV-VVLGKGDEPYQEIS-GKKYPFSDKLVVQEILSAI 429


>gi|158834104|gb|ABW81857.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/280 (36%), Positives = 148/280 (52%), Gaps = 11/280 (3%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH  
Sbjct: 9   TTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGD 68

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278
              Y  AK +LF     KE   II ADD   +  + +  +A    +       ++G+++ 
Sbjct: 69  MARYEAAKWQLFSTHHAKEK--IINADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLE 126

Query: 279 LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            K +   ++ Q VT+  +    +   +  L G F V N L+A    +A+      ++  +
Sbjct: 127 TKNIN--YHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDRP-TVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           GKR +MG IA   AD  +VTDDNPR+EDP  I A+I+ G+
Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGL 283


>gi|154174185|ref|YP_001409125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
 gi|153793058|gb|EAT99621.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
          Length = 432

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 187/392 (47%), Gaps = 35/392 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ A+ + +  +  G    +   + T  +F +  R     LTT + +   
Sbjct: 61  IVGITGTNGKTTTAAAIYETLRELG---HKCALSGTRGAFIEGERIDEKALTTSAILQTL 117

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L   S +G  +  +E SSH +DQ R++ +K     FTNL +DH+DYH++ Q Y   K 
Sbjct: 118 GYLKAASQRGCKYFIMEVSSHAIDQKRIESLKFALKIFTNLTQDHLDYHKSMQEYARVKS 177

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             FE+    +S  +I  DD   K   K A+       S+     F  +     +      
Sbjct: 178 SFFED----DSLKLINIDDGGIKFNPKNAY-----TYSLKKPASFAPV--AYGLKGGIDA 226

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVG 350
            I     D     PL GEF +YN + A G    +   +++ + + + K   V GR E V 
Sbjct: 227 VIKTPNGDVQIDSPLQGEFNLYNLIAALGAVYLLAKPENSKLSKAISKFSGVDGRVEVVS 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +      + VD+AHT + +E +L  +R +    +IV+FG GGDRD  KRP MG IA   A
Sbjct: 287 SEPL---VIVDFAHTPDGIEKVLNALRHLN---LIVIFGAGGDRDNTKRPKMGAIAQRYA 340

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-------LNKQDVLV 463
            I IVT DNPRSE+PE I  EI  G+    E  +RI   + AIE+       L     LV
Sbjct: 341 QICIVTSDNPRSEEPEAIIDEICAGMR-MDESVSRISDRKKAIELGLGRLKELGAGWALV 399

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           + GKG E    +  G K    D +++ + L L
Sbjct: 400 ILGKGDEEYQEI-KGVKHPFSDKEVVLKALAL 430


>gi|158834102|gb|ABW81856.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 284

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/280 (36%), Positives = 148/280 (52%), Gaps = 11/280 (3%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH  
Sbjct: 9   TTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGD 68

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278
              Y  AK +LF     KE   II ADD   +  + +  +A    +       ++G+++ 
Sbjct: 69  MARYEAAKWQLFSTHHAKEK--IINADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLE 126

Query: 279 LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            K +   ++ Q VT+  +    +   +  L G F V N L+A    +A+      ++  +
Sbjct: 127 TKNIN--YHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDRP-TVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           GKR +MG IA   AD  +VTDDNPR+EDP  I A+I+ G+
Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGL 283


>gi|319946493|ref|ZP_08020729.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
 gi|319747324|gb|EFV99581.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
          Length = 481

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 229/481 (47%), Gaps = 51/481 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGN--KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            N++S DSR + A  +F     N  KE    F+ QAI QG +  V       QDF  +I 
Sbjct: 35  FNQISYDSRKVNAETLFFVKGANFKKE----FLEQAIEQGLQWYVAE-----QDFEVSI- 84

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
              P ++V + ++ +SL A   YG HPE    +LA TGT GK++ A +  +I ++    +
Sbjct: 85  ---PAIIVTDIKQAMSLIAMEFYG-HPERQLKLLAFTGTKGKTTSAYYAYKILEQGHRPA 140

Query: 145 FQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                 +T+   +F + + LTTP  I L + ++   +   TH+ +E SS      R+ G+
Sbjct: 141 MLSTMNTTLDGKTFFK-STLTTPESIDLFEMMAQAVANDRTHLIMEVSSQAYLVKRVYGL 199

Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEV 256
               G F N+  DHI    H T + YF  K  L E         ++ +D    D  ++EV
Sbjct: 200 IFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLME----NSRAVVVNSDMDHFDILAEEV 255

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNA 315
            ++ H+             F   +    + N +  + SV GK   D+   L G F   NA
Sbjct: 256 AEQDHD-------------FYGSQSGNQVQNSKAFSFSVTGKLAGDYQTQLIGRFNQENA 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A   C+ +G     + + + K  V PGR E V T   G ++++DYAH  +SL+ +L  
Sbjct: 303 VAAGLACLRLGASLEDIQKGIAKTRV-PGRME-VLTQKNGAKVFIDYAHNGDSLKKLLSV 360

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIH 434
           + T  +G I +V G  G++ + +R   G +  D  +I + +T D+P  EDP  I  EI  
Sbjct: 361 VETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYEDPLAIAEEISS 420

Query: 435 GIPGFIEK-GNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            I   +EK  +R +AI+ A+   +K +D +++AGKG +   IV   +++   D  I    
Sbjct: 421 FITRPVEKIADREQAIQQAMATTSKPEDTVIIAGKGADCYQIVNGVKEEYPGDAAIAERY 480

Query: 493 L 493
           L
Sbjct: 481 L 481


>gi|34558000|ref|NP_907815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolinella succinogenes DSM 1740]
 gi|46576897|sp|Q7M8F9|MURE_WOLSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34483718|emb|CAE10715.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATELIGASE
           [Wolinella succinogenes]
          Length = 434

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 194/390 (49%), Gaps = 32/390 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           ++ VTGT+GK++ ++ +  I    G   +++    T   F  D       LTTP  + L 
Sbjct: 63  LIGVTGTNGKTTTSAAIYSILLDLG---YKVALLGTRGFFMNDELIEPKGLTTPPLLELY 119

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + +      G     +E SSH +DQ R++G+       TN+  DH+DYH++ + Y   K 
Sbjct: 120 ERIDRAKRAGCDFFVMEVSSHAIDQKRIEGLNFALKILTNITSDHLDYHKSLEHYIQTKN 179

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F++  PK    +I  D++ +K  ++ A       LS G +    +  K  ++H   + 
Sbjct: 180 SFFDDSTPK----LINKDESKAKFNLQNA-------LSYGIEHPSSYHVKAYSLHGGIEA 228

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            I+   K+      L G+  +YN L A + +   IG +   + +  E+   V GR E V 
Sbjct: 229 RIAFLEKEASLSSSLFGKHNLYNLLAAVSAVHRLIGGELQEICDMAERFGGVEGRMERV- 287

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             S    + VD+AHT + +  I +   +     I+V+FG GGDRD+ KRP MG +A   A
Sbjct: 288 --SEEPLVVVDFAHTEDGMRQIFE---SFPHQEIVVLFGAGGDRDRSKRPKMGAVADRYA 342

Query: 411 DIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
               +T DNPRSEDP  I  EI   IH     +++ +R++AIR A++ L  Q+VL++ GK
Sbjct: 343 KRIYLTSDNPRSEDPLLIIEEIEKGIHHCQKCVKEPDRVQAIRRAVKELEAQEVLLILGK 402

Query: 468 GHETVHIVTNGEKKMSV-DCDIIREILGLI 496
           G E   I+  G +K+ + D + +   LG I
Sbjct: 403 GDEAEQII--GSQKIPMKDRETVLSALGEI 430


>gi|42526337|ref|NP_971435.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
 gi|81570342|sp|Q73PH4|MURE_TREDE RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|41816449|gb|AAS11316.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
          Length = 532

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 141/489 (28%), Positives = 217/489 (44%), Gaps = 55/489 (11%)

Query: 23  MQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           +++  RK+   S D +  ++ G  F A+ G   DG  FI  AI  GA  I         D
Sbjct: 30  VEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDGKKFINSAIENGAVCIFYEG-----D 84

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139
            +         + V++ RK +S  ++ LY +      ++ VTGT GKSS  SF+ Q+   
Sbjct: 85  LNNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRTLGVIGVTGTEGKSSTVSFIFQLLNL 144

Query: 140 SGLSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            G  +   G  ST+      N +      TTP    +   L+ +   G ++  VEASSHG
Sbjct: 145 CGKKA---GFFSTVEYSIDGNVIPNPEHQTTPESNVVQLRLAQMRDSGCSYAVVEASSHG 201

Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------------L 238
           L     RL+ +   AG F N+ ++H+++H T + Y   K  LF  L             +
Sbjct: 202 LSPKTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYDKANLFRALDKNPGKGFPIFGIV 261

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             E P+  Y  +A  K V   +           Y+G F    +  +   K  +      K
Sbjct: 262 NYEDPSAPYFMEATQKNVYPFSTELKDLKKIEEYKGLFAKDIEESSSGIKFTLCDFSSRK 321

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++     L G F V N L +      I G+D A ++E L  +  V GR   +    +   
Sbjct: 322 EYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEKLPLVKPVKGRMMLI-DEGQDFE 380

Query: 358 IYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           + +DYAHT +S   I  +I+     + G++I +FG GG+RD  KRP  G+IA   +DI I
Sbjct: 381 VLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSGGERDVKKRPEQGRIAALYSDIVI 440

Query: 415 VTDDNPRSED------------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + D++PR ED            PEK R E +  IP      +R  AI+ A  +  K D +
Sbjct: 441 LADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIP------DRPSAIKKAFSLAGKNDAV 494

Query: 463 VVAGKGHET 471
           ++ GKGHE 
Sbjct: 495 LLLGKGHEN 503


>gi|293365809|ref|ZP_06612515.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307703321|ref|ZP_07640265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
 gi|291315742|gb|EFE56189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307623097|gb|EFO02090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
          Length = 481

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 151/511 (29%), Positives = 234/511 (45%), Gaps = 60/511 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++ G +F A     +  +L    
Sbjct: 9   DILKKDSLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P++VV++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TGT GK++ A F   I  QR      S +++   G T   SSF      +TP  I L   
Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSF------STPENIDLFDM 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           ++     G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K 
Sbjct: 171 MAQAVKNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                LL K S A++   D     V+K              +  F   +    I N +  
Sbjct: 230 ----RLLMKNSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAF 277

Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345
           + S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR
Sbjct: 278 SFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +
Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLL 390

Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462
                +I + +T D+P  EDP  I  EI   I   +EK  +R +AI+ A+ + N++ D +
Sbjct: 391 LNQHPEIHVFLTADDPNYEDPMVIAEEISSYISHPVEKIADREQAIKAAMAITNQELDAV 450

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKG +   IV   ++    D  I    L
Sbjct: 451 IIAGKGADCYQIVQGKKEDYPGDAAIAERYL 481


>gi|32267364|ref|NP_861396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter hepaticus ATCC 51449]
 gi|46576947|sp|Q7VF14|MURE_HELHP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|32263417|gb|AAP78462.1| UDP-N-acetylmuramyl tripeptide synthase [Helicobacter hepaticus
           ATCC 51449]
          Length = 463

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 208/467 (44%), Gaps = 79/467 (16%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-FSATIRSNTPILVVDNTRKFLSLF 105
           V  V NK++ +   PQ IAQ    +    +Y L D   A    N+P              
Sbjct: 46  VLFVKNKQNKNFITPQ-IAQSCSMV---ESYELNDILMANFSHNSP-------------- 87

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR---- 161
                     NI+ +TGT+GK++ A+ +  I    G   F +    T   F  ++R    
Sbjct: 88  ----------NIVGITGTNGKTTTAAIIYSILLDLG---FNVALLGTRGFFINEHRIKPK 134

Query: 162 -LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            LTTPS + L + L     Q      +E SSH ++Q R+ G+       TN+  DH+DYH
Sbjct: 135 GLTTPSMLELYENLCIAMEQKCNFFIMEVSSHAIEQERIAGLDFALKILTNITSDHLDYH 194

Query: 221 QTQQAYFNAKMRLFE----ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGK 275
           ++ + Y   K   FE    +LL  + P I   D A Y   + K+ +      LSV     
Sbjct: 195 KSVEEYRRIKNSFFEGEGRKLLNADEPYIYCTDKAAYFYGIEKKGN------LSV----- 243

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                 V A+ N     IS   +D+           L G+  +YN L A G  + I    
Sbjct: 244 -----DVYALENGIDGYISWRERDYKTNEQSAIQAHLYGKHNLYNTLAAIG-AVKILTQE 297

Query: 330 AL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            L  + E LE    V GR E V        + VD+AHT + +  I ++ R     +I VV
Sbjct: 298 PLERIAEALEHFGGVSGRMEVVHNMPL---VIVDFAHTYDGMYQIFESFRHC---KIAVV 351

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKG 443
           FG GGDRD+ KRP MG  A   A    +T DNPR+E P+ I  +I+ G+      F+E  
Sbjct: 352 FGAGGDRDKSKRPKMGACAQQFAHKIYITSDNPRTESPKSIIEDILSGMQDGEYVFVE-A 410

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +R +AI  A+E L   +VL++ GKG E   I+ N EK    D +++R
Sbjct: 411 DRKKAIYMALESLESDEVLLILGKGDEDYQIIGN-EKIYFDDREVVR 456


>gi|46204010|ref|ZP_00050625.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 198

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/177 (56%), Positives = 116/177 (65%), Gaps = 4/177 (2%)

Query: 304 FPLPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            PL G FQV NALVAAGL +   A   D A V   LE L  VPGR E +G  +RGG   V
Sbjct: 3   LPLVGGFQVENALVAAGLALATPAGAADPAGVFAALESLTGVPGRMERIG-EARGGLCLV 61

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH   +LE +L  +R   SGR++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNP
Sbjct: 62  DYAHKPEALEHVLTALRPFASGRLVVVFGCGGNRDSGKRPIMGAIAARLADRVIVTDDNP 121

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R+E+P  IRA I+   PG  E G+R +AIR  +  L   DVLVVAGKGHET  IV +
Sbjct: 122 RNEEPASIRAAILAAAPGAEEIGDRAQAIREGVRSLKAGDVLVVAGKGHETGQIVGD 178


>gi|224419204|ref|ZP_03657210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253828133|ref|ZP_04871018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313142708|ref|ZP_07804901.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511539|gb|EES90198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313131739|gb|EFR49356.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 434

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 186/380 (48%), Gaps = 34/380 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-----AQDNRLTTPSPIYLAK 172
           + +TGT+GK++ A+ +  I    G   +++G   T   F      +   LTTPS + +  
Sbjct: 65  IGITGTNGKTTTAAMIYSILLDMG---YKVGLLGTRGFFINGIQKRPKGLTTPSTLEIYT 121

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A++    +G     +E SSH + Q+R++G++      TN+  DH+DYH+T + Y   K  
Sbjct: 122 AINEAKQEGCEFFVMEVSSHAITQNRIEGLEFALKILTNITSDHLDYHKTLENYIATKNS 181

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F     K+   +I  D+  ++  ++     G    S  +  K   LK         Q+T
Sbjct: 182 FFSNPNDKK---LINKDEKNAQYPLQNTLTYGIESTST-FSIKAYSLKGGITA----QIT 233

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVG 350
              +    D   PL G+  +YNAL A G  + +     L  +   LE    V GR + + 
Sbjct: 234 YGSQVATLDS--PLLGKHNLYNALAAIG-AVQMLTQKPLQEIANQLENFGGVMGRMQII- 289

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             ++   I VD+AHT + +E I    ++    +I V+FG GGDRD+ KRP MG  A   A
Sbjct: 290 --NQKPLIVVDFAHTEDGMEQIF---QSFLHQKIAVLFGAGGDRDKTKRPKMGFCASKYA 344

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
               +T DNPR+EDP+ I  EI+ GIP       I + NR  AI+ AI  L + +VL+V 
Sbjct: 345 QKIYITSDNPRNEDPKTIMQEILSGIPQSKRSRVILEENRALAIQKAIAELKEDEVLLVL 404

Query: 466 GKGHETVHIVTNGEKKMSVD 485
           GKG ET  I+  G++ +  D
Sbjct: 405 GKGDETYQII--GDRTLHFD 422


>gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
 gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
          Length = 487

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 211/469 (44%), Gaps = 57/469 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +S  +Q   +F+   G   D H ++ QAI  GA A++ +          T+  + P++V 
Sbjct: 24  NSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIANR---------TLHLDIPVIVT 74

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF--QIGPT 150
           ++   + SL   +    HP    N + VTGT+GK++VA  + Q+  +S  S++   +G  
Sbjct: 75  ES--HYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCLNQMLNQSSTSAYIGTLGVQ 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                 A  N  TTP  + L      +   GV H  +E SSH L Q R   + L  G  T
Sbjct: 133 YADVIMALSN--TTPDGVTLLNIFRDMVECGVKHNVMELSSHALAQDRAGFLDLEVGIIT 190

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GRDH+DYH+T+ AY  AK+++ + + P    A+I  DD ++  +  R H    RV +V
Sbjct: 191 NIGRDHLDYHRTKDAYVQAKLQIIDRIKPG-GYAVINMDDPHAPAMFARCHG---RVKTV 246

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLF---------PLPGEFQVYNA 315
            +    IH K     HN+    ++ E      G  F   +          +P  F V N 
Sbjct: 247 SFS---IHYKDT---HNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQMPFLFNVENM 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L  A    A G     +   L  +    GR +F   N+ G    VDYAH  + L  +  +
Sbjct: 301 LAMACALHAQGWTLDQIASGLTTIIPPDGRAQFQTLNN-GATGLVDYAHNLDGLARLFSD 359

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I   T    + V G  GDR Q    I G++    +D+ + T DNP   D    +A+I   
Sbjct: 360 IPNQTFRHTLTVVGVTGDRIQDAAAI-GELCARYSDLVVFTMDNPLGID----QADIFRA 414

Query: 436 IPGFIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           +   IE          +R EAI  A +M  K D++VV GKG ET  +++
Sbjct: 415 LTSRIESVSTPVFTIADRSEAISLAKQMSQKGDLIVVCGKGSETSQLIS 463


>gi|152990002|ref|YP_001355724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
 gi|151421863|dbj|BAF69367.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
          Length = 430

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 186/385 (48%), Gaps = 30/385 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAK 172
           + VTGT+GK++ A+ +       GL +   G   T   F +D +L     TTP  +    
Sbjct: 59  IGVTGTNGKTTTAAAIYSYLNDLGLKAALQG---TRGFFIEDEQLEKKSLTTPPILQTLY 115

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +     QG T+  +E SSH + Q+R++ ++     FTN+ +DH+DYH+T Q Y   K  
Sbjct: 116 HMYTAKQQGATYFVMEVSSHAIAQNRIEDLQFALKVFTNISQDHLDYHKTMQNYIATKSS 175

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F +    E   +I  DD + +   K     G R  SV     +  L    ++ N     
Sbjct: 176 FFMD----EGSKLINKDDKHIQYNPK-----GARTYSVEELATYQIL--AFSMQNGISAV 224

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +    +  DF  P+ G F +YN   A + + +   +    + E  E    V GR + +  
Sbjct: 225 LRFGNEMIDFHAPMIGLFNLYNVTAAISAVHMLTNLPLQQICEVTEHFAGVKGRMQILNE 284

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 I VD+AHT + ++ + +   +    +++ +FG GGDRD+ KR +MG +A     
Sbjct: 285 EPL---IIVDFAHTPDGMQKVFE---SFPGKKLVAIFGAGGDRDRSKRALMGNVASRFCT 338

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK-GNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +T DNPRSEDP++I  +I  GI    F+EK  +R EA+  A   L K ++L++ GKG
Sbjct: 339 KIYLTSDNPRSEDPKQIIEDIAKGIETDVFVEKIVDRKEAVEKAFHSLQKDEILLILGKG 398

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
            E  +I  NG K    D +++ +I+
Sbjct: 399 DEE-YIEQNGTKIPYSDVEVVTDII 422


>gi|322375576|ref|ZP_08050088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
 gi|321279284|gb|EFX56325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
          Length = 481

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 151/500 (30%), Positives = 236/500 (47%), Gaps = 63/500 (12%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++ G +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI+QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TGT GK++ A F   I  QR      S +++   G T   SSF      +TP  I L   
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSF------STPENIDLFDM 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           ++     G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K 
Sbjct: 171 MAQAVQNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290
                LL + S A++   D     V+K           V +Q   F   +    I N + 
Sbjct: 230 ----RLLMENSRAVVINSDMDHFSVLKE---------QVEHQEHDFYGSQSSNQIENSKA 276

Query: 291 VTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPG 344
            + S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPG
Sbjct: 277 FSFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPG 330

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G 
Sbjct: 331 RME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGL 389

Query: 405 IALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DV 461
           +     +I + +T D+P  EDP  I  EI   I   +EK  +R +AI+ A+ + N++ D 
Sbjct: 390 LLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIVDREQAIKAAMAITNQELDA 449

Query: 462 LVVAGKGHETVHIVTNGEKK 481
           +++AGKG +   IV NG K+
Sbjct: 450 VIIAGKGADCYQIV-NGVKE 468


>gi|300213951|gb|ADJ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus salivarius CECT 5713]
          Length = 510

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 146/503 (29%), Positives = 233/503 (46%), Gaps = 69/503 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR +    +F    GN +  +L    A+ +GA A V    Y+ +   AT       
Sbjct: 32  VTYDSRKVSDNTLFFC-KGNFKPSYL--TSALEKGATAYVSEQKYA-EGMDATG------ 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++V N +K ++L  +  YG  P+N   I+A TGT GK++ A F + I  ++  +  ++  
Sbjct: 82  IIVTNVQKAMALLGAAFYG-FPQNELFIIAYTGTKGKTTSAYFAEHILAKA--TDKKVAL 138

Query: 150 TSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            STI        D R    LTTP  + L   +    + G+TH+ +E SS    ++R+ G+
Sbjct: 139 FSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNRVYGL 198

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G F N+  DHI  + H T   Y + K    E+LL      +I  + AY ++V   A
Sbjct: 199 TFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNSKRCVINGETAYLRDVYYTA 254

Query: 261 H------------NAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQVTISVEGKD 299
                          G ++     + + YQ  F  L K    V  + +K Q T+ V+GK 
Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQ-TLHVDGK- 312

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   +PG++   NA  A    +  G       + L+++H+ PGR E + T + G  IY
Sbjct: 313 --YELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRMEIIKTKNNG-TIY 368

Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   SL+ +   ++  T +GR+I V G  GD+   +RP  GK   +  D  I+T D
Sbjct: 369 VDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKAVSEEVDHVILTTD 428

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +P  EDP KI  E    I  +I   N        R  AI  AI+M    D++V+AGKG +
Sbjct: 429 DPGFEDPMKIAQE----IDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKGED 484

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +   +     D ++ ++I+
Sbjct: 485 PYQKIKGVDVPYPSDVNVAKKIV 507


>gi|160933543|ref|ZP_02080931.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
 gi|156867420|gb|EDO60792.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
          Length = 492

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 140/482 (29%), Positives = 230/482 (47%), Gaps = 40/482 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N+V  DSR ++ G +FV ++G+  D H +  QA+  GA A+V S    L        + 
Sbjct: 26  VNDVVYDSRRVRPGCVFVCLIGSAVDSHQYAAQAVEAGAAAVVASRQLEL--------AK 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSSFQ 146
             +++V++TRK ++  ++ L+G HP   L   G   T GK++ A  ++ I ++ G+ +  
Sbjct: 78  GTLVLVEDTRKAMAYMSAALFG-HPAAKLKTVGITGTKGKTTTACMIKTILEKGGIKTGV 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG    I          T    Y + K L+ +  +G     +EASS GL  HR DG+   
Sbjct: 137 IGTLGVIIGDTTYPTNNTTPESYDVQKYLNQMVEEGCQCAVMEASSLGLKWHRTDGLVFD 196

Query: 206 AGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            G FTN   DHI  + H   + Y   K  LF+         ++  DD   + ++K   + 
Sbjct: 197 YGVFTNFSPDHIGENEHSCLEEYAACKGLLFQSC----KLGLVNIDDPACETILK---DH 249

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------FPLPGEFQVYNA 315
            C + + G+      LK     +          G  FD            +PG+F  YNA
Sbjct: 250 TCELETFGFSNPQAQLK---GSNEGLIYRPGYLGAHFDVSGAMKLSVDVDIPGKFSAYNA 306

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A  +C    +    +L+ L ++  V GR E V        + +DYAH + S+E IL  
Sbjct: 307 IAAIAVCRHFPVSEQNILDGLNEVK-VKGRVEPVKVPGN-YTLLIDYAHNAVSMENILTT 364

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R     R++ +FG GG+R + +R  MG+++  LAD+ ++T+DN R E+   I  +I  G
Sbjct: 365 LREYQPHRLVCMFGAGGNRAKSRRYEMGEVSGRLADLTVITEDNSRFENVMDIIQDIQTG 424

Query: 436 IPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +     K     NR +AIR  IE   + D++V+AGKGHE    +  G K+   + +I+ +
Sbjct: 425 MAKTQGKSIVIPNRRDAIRYCIENAQEHDIVVLAGKGHEDYQEI-KGVKRHFDEREIVAD 483

Query: 492 IL 493
           IL
Sbjct: 484 IL 485


>gi|237752986|ref|ZP_04583466.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375253|gb|EEO25344.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 446

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 181/373 (48%), Gaps = 34/373 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-----AQDNRLTTPSPIYLA 171
           I+A+TGT+GK++ A+ +  I    G   +++    T   F      ++  LTTPS + + 
Sbjct: 73  IIAITGTNGKTTTAAMIYSILLDLG---YKVALLGTRGFFINGVKKREKGLTTPSLLEIY 129

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A++    +  T+  +E SSH + Q R++G++      TN+  DH+DYH+T + Y   K 
Sbjct: 130 SAITEARKENCTYFVMEVSSHAIVQERIEGLEFTLKILTNITSDHLDYHKTLENYIATKN 189

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   L      +I  D+  ++  +++A       ++ G +       +  ++ +    
Sbjct: 190 SFF---LSPLDLKLINKDEPNARYALQKA-------ITYGIESPATFQVRAYSLKDGITA 239

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFV 349
            I+   ++      L G+  +YNAL A    + +  +  L  + E LE    V GR + V
Sbjct: 240 QIAYGKEESSLQCSLFGKHNLYNALAAIS-AVKLLENEPLQEICEKLENFGGVLGRMQVV 298

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N     I VD+AHT + +E I    ++    +I VVFG GGDRD+ KRP MG  A   
Sbjct: 299 SQNPL---IIVDFAHTEDGMEKIF---QSFPHRKIAVVFGAGGDRDKTKRPKMGLCAAKY 352

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVL 462
           A    +T DNPRSE P  I  EI +GIP  + +        NR +AI  AI  L   +VL
Sbjct: 353 AQKIYITSDNPRSEIPSAIIQEIFNGIPQTLREKLEIYLEENRAKAINMAISALKSDEVL 412

Query: 463 VVAGKGHETVHIV 475
           ++ GKG ET  I+
Sbjct: 413 LILGKGDETYQII 425


>gi|90961006|ref|YP_534922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius UCC118]
 gi|122449508|sp|Q1WVQ8|MURE_LACS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|90820200|gb|ABD98839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus salivarius UCC118]
          Length = 510

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 146/503 (29%), Positives = 235/503 (46%), Gaps = 69/503 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR +    +F    GN +  +L    A+ +GA A V    Y+ +   AT       
Sbjct: 32  VTYDSRKVSDNTLFFC-KGNFKPSYL--TSALEKGATAYVSEQKYA-EGMDATG------ 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++V N +K ++L  +  YG  P+N   I+A TGT GK++ A F + I  ++  +  ++  
Sbjct: 82  IIVTNVQKAMALLGAAFYG-FPQNELFIIAYTGTKGKTTSAYFAEHILAKA--TDKKVAL 138

Query: 150 TSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            STI        D R    LTTP  + L   +    + G+TH+ +E SS    ++R+ G+
Sbjct: 139 FSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNRVYGL 198

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G F N+  DHI  + H T   Y + K    E+LL      +I  + AY ++V   A
Sbjct: 199 TFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNSKRCVINGETAYLRDVYYTA 254

Query: 261 H------------NAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQVTISVEGKD 299
                          G ++     + + YQ  F  L K    V  + +K Q T+ V+GK 
Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQ-TLHVDGK- 312

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   +PG++   NA  A    +  G       + L+++H+ PGR E + T + G  IY
Sbjct: 313 --YELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRMEIIKTKNNG-TIY 368

Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   SL+ +   ++  T +GR+I V G  GD+   +RP  GK   +  D  I+T D
Sbjct: 369 VDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKAVSEEVDHVILTTD 428

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN-RIE-------AIRTAIEMLNKQDVLVVAGKGHE 470
           +P  EDP KI  E    I  +I   N ++E       AI  AI+M    D++V+AGKG +
Sbjct: 429 DPGFEDPMKIAQE----IDSYINHDNVKVEFELDREIAIEKAIKMSTNNDIVVLAGKGED 484

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +   +     D ++ ++I+
Sbjct: 485 PYQKIKGVDVPYPSDVNVAKKIV 507


>gi|227891687|ref|ZP_04009492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866490|gb|EEJ73911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 510

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 146/503 (29%), Positives = 233/503 (46%), Gaps = 69/503 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR +    +F    GN +  +L    A+ +GA A V    Y+ +   AT       
Sbjct: 32  VTYDSRKVSDNTLFFC-KGNFKPSYL--TSALEKGATAYVSEQKYA-EGMDATG------ 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++V N +K ++L  +  YG  P+N   I+A TGT GK++ A F + I  ++  +  ++  
Sbjct: 82  IIVTNVQKAMALLGAAFYG-FPQNELFIIAYTGTKGKTTSAYFAEHILAKA--TDKKVAL 138

Query: 150 TSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            STI        D R    LTTP  + L   +    + G+TH+ +E SS    ++R+ G+
Sbjct: 139 FSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNRVYGL 198

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G F N+  DHI  + H T   Y + K    E+LL      +I  + AY ++V   A
Sbjct: 199 TFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNSKCCVINGETAYLRDVYYTA 254

Query: 261 H------------NAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQVTISVEGKD 299
                          G ++     + + YQ  F  L K    V  + +K Q T+ V+GK 
Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQ-TLHVDGK- 312

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   +PG++   NA  A    +  G       + L+++H+ PGR E + T + G  IY
Sbjct: 313 --YELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRMEIIKTKNNG-TIY 368

Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   SL+ +   ++  T +GR+I V G  GD+   +RP  GK   +  D  I+T D
Sbjct: 369 VDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKAVSEEVDHVILTTD 428

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +P  EDP KI  E    I  +I   N        R  AI  AI+M    D++V+AGKG +
Sbjct: 429 DPGFEDPMKIAQE----IDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKGED 484

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +   +     D ++ ++I+
Sbjct: 485 PYQKIKGVDVPYPSDVNVAKKIV 507


>gi|301299515|ref|ZP_07205788.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852905|gb|EFK80516.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 510

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 146/503 (29%), Positives = 233/503 (46%), Gaps = 69/503 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR +    +F    GN +  +L    A+ +GA A V    Y+ +   AT       
Sbjct: 32  VTYDSRKVSDNTLFFC-KGNFKPSYL--TSALEKGATAYVSEQKYA-EGMDATG------ 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++V N +K ++L  +  YG  P+N   I+A TGT GK++ A F + I  ++  +  ++  
Sbjct: 82  IIVTNVQKAMALLGAVFYG-FPQNELFIIAYTGTKGKTTSAYFAEHILAKA--TDKKVAL 138

Query: 150 TSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            STI        D R    LTTP  + L   +    + G+TH+ +E SS    ++R+ G+
Sbjct: 139 FSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNRVYGL 198

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G F N+  DHI  + H T   Y + K    E+LL      +I  + AY ++V   A
Sbjct: 199 TFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNSKRCVINGETAYLRDVYYTA 254

Query: 261 H------------NAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQVTISVEGKD 299
                          G ++     + + YQ  F  L K    V  + +K Q T+ V+GK 
Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQ-TLHVDGK- 312

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   +PG++   NA  A    +  G       + L+++H+ PGR E + T + G  IY
Sbjct: 313 --YELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRMEIIKTKNNG-TIY 368

Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   SL+ +   ++  T +GR+I V G  GD+   +RP  GK   +  D  I+T D
Sbjct: 369 VDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKAVSEEVDHVILTTD 428

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +P  EDP KI  E    I  +I   N        R  AI  AI+M    D++V+AGKG +
Sbjct: 429 DPGFEDPMKIAQE----IDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKGED 484

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +   +     D ++ ++I+
Sbjct: 485 PYQKIKGVDVPYPSDVNVAKKIV 507


>gi|270292442|ref|ZP_06198653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
 gi|270278421|gb|EFA24267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
          Length = 481

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 233/506 (46%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR ++AG +F A     +  +L    
Sbjct: 9   DILKKDSLFREIIDQGHYY-YNYSDVDFDSISYDSRKVKAGTLFFAKGATFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P++VV++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLGWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMAQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
             G +H+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 HNGRSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++   D     V+K              +  F   +    I N +  + S  
Sbjct: 231 LLMENSRAVVINSDMDHFSVLKEQVE--------NQEHDFYGSQSSNQIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N++ D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   IV   ++    D  I    L
Sbjct: 456 GADCYQIVQGKKEDYPGDAAIAERYL 481


>gi|313144193|ref|ZP_07806386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
 gi|313129224|gb|EFR46841.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 464

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 192/404 (47%), Gaps = 46/404 (11%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPI 168
           G++P  I+ +TGT+GK++ A+ +  +    G     +G        S  +   LTTPS +
Sbjct: 80  GENPR-IVGITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVL 138

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L + LS+  ++G  +  +E SSH + Q R+ G+       TN+  DH+DYH++ + Y  
Sbjct: 139 ELYENLSFAKAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRR 198

Query: 229 AKMRLFEELLPKESPAIIYADDAYSK-------------EVMKRAH-NAGCRVLSVGYQG 274
            K   FEE        +I AD+ Y++              V K+ H + G   L  G   
Sbjct: 199 VKNSFFEE----RGLKLINADEKYAQCQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDA 254

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVL 333
                  +    NK+    S   + +     L G+  +YNAL   A + I        + 
Sbjct: 255 H------IAWRDNKECSQESCALQTY-----LYGKHNLYNALAGIAAVKILTNKPLCKIA 303

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + +E    V GR E V        + VD+AHT + ++ I ++ R     +I VVFG GGD
Sbjct: 304 QAMENFGGVSGRMEVVHHKPL---VIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGD 357

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIE 447
           RD+ KRP MG  A + AD   +T DNPRSEDP +I  +I  G+P        + + +R +
Sbjct: 358 RDKSKRPKMGACAFEYADKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKK 417

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           AI  A+  L + +VL++ GKG E   I+ N +     D +++RE
Sbjct: 418 AIIQALNELQENEVLLILGKGDEDCQIIGNNKIYFD-DREVVRE 460


>gi|222823156|ref|YP_002574729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter lari RM2100]
 gi|222538377|gb|ACM63478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter lari RM2100]
          Length = 427

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 126/397 (31%), Positives = 200/397 (50%), Gaps = 54/397 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLA- 171
           I+ +TGT+GK++ A  +  I    G     +G   T  SF  D  +T    T +PI    
Sbjct: 61  IIGITGTNGKTTTAGAIYSILLDLGYKCALMG---TRGSFINDKNITPKGLTTAPILQTL 117

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + LS  S Q    + +E SSH L Q+R++G++  A  FTNL +DH+D+H + + Y  AK 
Sbjct: 118 EILSLASEQKCEFLIMEVSSHALVQNRIEGLEFKAKIFTNLTQDHLDFHGSFENYKQAKE 177

Query: 232 RLFEE----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             F +     + K++ AI +         +K + + G    S      + H+K   A+ N
Sbjct: 178 SFFTDECMKFINKDASAIAFN--------VKNSFSYGIENPS------YYHIKAY-ALKN 222

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV------ 341
             +  ++    +F     L G F +YN L+AA  C+     + LV  +L++L        
Sbjct: 223 GIEAVVNFGKNNFTIESSLVGLFNLYN-LLAASACV-----NELVRPNLKELEKAISNFG 276

Query: 342 -VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            + GR + V  +     + VD+AHT + +E +L  ++      +IVVFG GG+RD+ KRP
Sbjct: 277 GIEGRMQVVAKD-----VIVDFAHTPDGIEKVLDALKY---KNLIVVFGAGGNRDKTKRP 328

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456
           +M KIA   A   I+T DNPR E+P  I  +I+ GI      F+E  +R +AI+ A+E  
Sbjct: 329 LMAKIAKYYAKKLIITSDNPRFEEPMDIINDILSGIKKDENVFVE-CDRKKAIKKALEFK 387

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           N  + +V+ GKG ET   +  G K    D +++ EIL
Sbjct: 388 NDDEFVVILGKGDETYQEIK-GVKYPFNDKEVVLEIL 423


>gi|224437747|ref|ZP_03658694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 455

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 193/404 (47%), Gaps = 46/404 (11%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPI 168
           G++P  I+ +TGT+GK++ A+ +  +    G     +G        S  +   LTTPS +
Sbjct: 71  GENPR-IVGITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVL 129

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L + LS+  ++G  +  +E SSH + Q R+ G+       TN+  DH+DYH++ + Y  
Sbjct: 130 ELYENLSFAKAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRR 189

Query: 229 AKMRLFEELLPKESPAIIYADDAYSK-------------EVMKRAH-NAGCRVLSVGYQG 274
            K   FEE   K    +I AD+ Y++              V K+ H + G   L  G   
Sbjct: 190 VKNSFFEERGLK----LINADEKYAQCQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDA 245

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVL 333
                  +    NK+    S   + +     L G+  +YNAL   A + I        + 
Sbjct: 246 H------IAWRDNKECSQESCALQTY-----LYGKHNLYNALAGIAAVKILTNKPLCKIA 294

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + +E    V GR E V        + VD+AHT + ++ I ++ R     +I VVFG GGD
Sbjct: 295 QAMENFGGVSGRMEVV---HHKPLVIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGD 348

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIE 447
           RD+ KRP MG  A + AD   +T DNPRSEDP +I  +I  G+P        + + +R +
Sbjct: 349 RDKSKRPKMGACAFEYADKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKK 408

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           AI  A+  L + +VL++ GKG E   I+ N +     D +++RE
Sbjct: 409 AIIQALNELQENEVLLILGKGDEDCQIIGNNKIYFD-DREVVRE 451


>gi|331266032|ref|YP_004325662.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
 gi|326682704|emb|CBZ00321.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
          Length = 481

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 149/506 (29%), Positives = 232/506 (45%), Gaps = 60/506 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++   +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKERTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TGT GK++ A F   I  QR      S +++   G T   SSF      +TP  I L   
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSF------STPENIDLFDM 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           ++     G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K 
Sbjct: 171 MAQAVQNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                LL K S A++   D     V+K              +  F   +    I N +  
Sbjct: 230 ----RLLMKNSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAF 277

Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345
           + S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR
Sbjct: 278 SFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +
Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGIL 390

Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462
                +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N++ D +
Sbjct: 391 LNQHPEIQVFLTADDPNYEDPMAIAEEISSYINHPVEKIADREEAIKAAMAITNQELDAV 450

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++AGKG +   IV   ++    D  I
Sbjct: 451 IIAGKGADCYQIVQGKKEDYPGDAAI 476


>gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
 gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
          Length = 508

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 216/479 (45%), Gaps = 60/479 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  ++ DSR +   ++F A+ G   +G  FI  AI +G+  IV ++     D     
Sbjct: 28  EVEILGLAYDSRCVSFNFVFFALPGLYFNGQKFIESAIQRGSNVIVHTNDIDFYD----- 82

Query: 87  RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
            SN   + VD  N ++F+S FA   Y +  +   I+ VTGT GKSSV  ++  + +  G 
Sbjct: 83  -SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGA 141

Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              ++G  ST+  F +D          R +TP    +   LS + +  V +  +E++SHG
Sbjct: 142 ---KVGFISTV--FLEDGSGALVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHG 196

Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           LD    RL  I+      TN+  +H+++H T Q Y  AK+ LF          II  DD 
Sbjct: 197 LDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANSHGGFGIINMDDN 256

Query: 252 YSKEVMK----------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +    M           +   A   +  +  Q  F   +     HNK +    V      
Sbjct: 257 HFSVFMNSINRTYTYSLKNEKADFFISKINEQMGFTEFE---FYHNKTKYAARVN----- 308

Query: 302 FLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               L G F V N + A  +   I  +D + ++  L  +  + GR + +        I V
Sbjct: 309 ----LTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQDINFGQDFSLI-V 363

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT  +   +    + +   R+I VFG  G+RD  KR + G+IA + +D+ I+ D++P
Sbjct: 364 DYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEYSDVIILCDEDP 423

Query: 421 RSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           R ED  +I  +I  GI          FI   +R  AI  AI +    D++V  GKGHE+
Sbjct: 424 RGEDSMQIIRDIAEGIVTKTLNRDLFFIP--DRKCAIEKAINIACSDDLVVTLGKGHES 480


>gi|290890409|ref|ZP_06553484.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
 gi|290479805|gb|EFD88454.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
          Length = 499

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 209/434 (48%), Gaps = 39/434 (8%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRS--------NTPILVVDNTRKFLSLFASRLYGKHPE 115
           + +GA  I   +A  L   S  + S        N P  +V N++  L++ ++  +G HPE
Sbjct: 49  VVKGAFKIEYLTASLLDKISGIVTSRKEKINIPNLPHWIVSNSQIALAVLSAEFFG-HPE 107

Query: 116 N---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSP 167
               IL +TGT GK+S       +  R  L++ Q    STI +F        + LTTP  
Sbjct: 108 KKLKILGITGTKGKTSSTYMAYSLLDR--LTNHQTAMFSTIDTFLGRGIKFKSELTTPES 165

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQA 225
             L   +      G  ++ +E SS    ++R+ GI    G+F N+  DHI  + H T   
Sbjct: 166 YELFSNMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFAD 225

Query: 226 YFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKK 281
           Y   K     ++L + S   +   DDA+ +E +  A + G + +SV    K     H+KK
Sbjct: 226 YLAHK-----KMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKK 280

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             A  ++    ++ +G   +FL  +PG F +YNA VA  +   +G       + L +L +
Sbjct: 281 --ADLDESIFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI 338

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400
            PGR   + T S G  I VDYAH   ++  +L  +++    G+II+V G  GD+ + +R 
Sbjct: 339 -PGRMVKIKTKSHG-LIIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGKDRRS 396

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456
             G++     D+A +T D+P +EDP +I  +I   I        E+ +R +AI+ AI+  
Sbjct: 397 QFGEVISKFVDVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKA 456

Query: 457 NKQDVLVVAGKGHE 470
           N  D++V+A KG +
Sbjct: 457 NINDLVVLAAKGED 470


>gi|116490935|ref|YP_810479.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
 gi|116091660|gb|ABJ56814.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
          Length = 499

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 209/434 (48%), Gaps = 39/434 (8%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRS--------NTPILVVDNTRKFLSLFASRLYGKHPE 115
           + +GA  I   +A  L   S  + S        N P  +V N++  L++ ++  +G HPE
Sbjct: 49  VVKGAFKIEYLTASLLDKISGIVTSRKEKINIPNLPHWIVSNSQIALAVLSAEFFG-HPE 107

Query: 116 N---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSP 167
               IL +TGT GK+S       +  R  L++ Q    STI +F        + LTTP  
Sbjct: 108 KKLKILGITGTKGKTSSTYMAYSLLDR--LTNHQTAMFSTIDTFLGRGIKFKSELTTPES 165

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQA 225
             L   +      G  ++ +E SS    ++R+ GI    G+F N+  DHI  + H T   
Sbjct: 166 YELFSNMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFAD 225

Query: 226 YFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKK 281
           Y   K     ++L + S   +   DDA+ +E +  A + G + +SV    K     H+KK
Sbjct: 226 YLAHK-----KMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKK 280

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             A  ++    ++ +G   +FL  +PG F +YNA VA  +   +G       + L +L +
Sbjct: 281 --ADLDESIFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI 338

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400
            PGR   + T S G  I VDYAH   ++  +L  +++    G+II+V G  GD+ + +R 
Sbjct: 339 -PGRMVKIKTKSHG-LIIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRS 396

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456
             G++     D+A +T D+P +EDP +I  +I   I        E+ +R +AI+ AI+  
Sbjct: 397 QFGEVISKFVDVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKA 456

Query: 457 NKQDVLVVAGKGHE 470
           N  D++V+A KG +
Sbjct: 457 NINDLVVLAAKGED 470


>gi|315221934|ref|ZP_07863845.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
 gi|315188900|gb|EFU22604.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
          Length = 481

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 143/484 (29%), Positives = 233/484 (48%), Gaps = 45/484 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN--KEDGHLFIPQAIAQG 67
           +F E+I++   F   +R+    ++S DSR + A  +F     N  KE    F+ +A+  G
Sbjct: 16  NFREIIDKGQYF-YHYRDLVFEKISYDSREVDASTLFFVKGDNFKKE----FLEKAVTAG 70

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124
            +  +     S  DF   I    P L+V++ ++ +SL A   YG +P++   +LA TGT 
Sbjct: 71  LQLYI-----SEMDFEVGI----PALIVNDVKQAMSLLAMEFYG-NPQDKLKLLAFTGTK 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGV 182
           GK++ A F   I Q+S   +      +T+    F + + LTTP  + L K ++     G 
Sbjct: 121 GKTTSAYFAYHILQQSHKPALLSTMNTTLDGEHFFK-SALTTPESLDLFKMMATAVENGR 179

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPK 240
           TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K      LL +
Sbjct: 180 THLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLME 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S A++   +    EV+        +V S+  +  F        I + Q  +    GK  
Sbjct: 235 NSLAVVVNSEMDHFEVLAE------QVASM--EHDFYGQHSDNQIRHSQAFSFETSGKLA 286

Query: 301 D-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           + F   L G F   NAL A   C+ +G   A + + +    V PGR E V T   G +++
Sbjct: 287 EKFDIQLIGRFNQENALAAVLACLRLGASVADIKKGIASTRV-PGRME-VLTQQNGAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDD 418
           VDYAH   SL  +L  ++    G+II+V G  G++ + +R   G +     ++ ++ T D
Sbjct: 345 VDYAHNGVSLANLLSVVQEHQKGKIILVLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   ++   +R EAI+ A+ + N++ D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPIAIAKEIASYISFDVDIIADRKEAIKIALSLTNREGDAVILAGKGADCYQII- 463

Query: 477 NGEK 480
           NGEK
Sbjct: 464 NGEK 467


>gi|158834108|gb|ABW81859.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 149/280 (53%), Gaps = 11/280 (3%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT S I + K L++   QG +  ++E SSHGL QHR+  +   A  FTNL RDH+DYH  
Sbjct: 9   TTGSAIDVQKTLNHFVMQGASFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYHGD 68

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278
              Y  AK +LF     KE   II ADD   +  + +  +A    +       ++G+++ 
Sbjct: 69  MARYEAAKWQLFSTHHAKEK--IINADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLE 126

Query: 279 LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            + +   ++ Q VT+  +    +   +  L G F V N L+A    +A+      ++  +
Sbjct: 127 AQNIN--YHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  +FGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDRP-TVIVDYAHTPDALEKALVAARLHCKGQLWCLFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           GKR +MG IA   AD  +VTDDNPR+EDP  I A+I+ G+
Sbjct: 244 GKRALMGSIAEQWADHLVVTDDNPRTEDPGSIVADILSGL 283


>gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 481

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 144/486 (29%), Positives = 236/486 (48%), Gaps = 49/486 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN--KEDGHLFIPQAIAQG 67
           +F E+I++   F   +R     ++S DSR + A  +F     N  KE    F+ +A+  G
Sbjct: 16  NFREIIDKGQYF-YHYRNLVFEKISYDSREVDASTLFFVKGDNFKKE----FLEKAVESG 70

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124
            +  V     S  DF  TI    P+++V++ ++ +SL A   YG +P++   +LA TGT 
Sbjct: 71  LQFYV-----SETDFEVTI----PVILVNDVKQAMSLLAMEFYG-NPQDKLKLLAFTGTK 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGV 182
           GK++ A F   I Q+S   +      +T+    F + + LTTP  + L K ++     G 
Sbjct: 121 GKTTSAYFAYHILQQSHKPALLSTMNTTLDGEHFFK-STLTTPESLDLFKMMATAVENGR 179

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPK 240
           TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K      LL +
Sbjct: 180 THLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLME 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--- 297
            S A++   +    EV+        +V S+  +  F        IH+ Q  +    G   
Sbjct: 235 NSRAVVVNSEMDHFEVLAE------QVASM--EHDFYGQHSDNQIHHSQAFSFETSGILT 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + FD    L G F   NAL A+  C+ +G   + + + +    V PGR E V T   G +
Sbjct: 287 EKFDI--QLIGRFNQENALAASLACLRLGATISDIKKGIAATRV-PGRME-VLTQQNGAK 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416
           ++VDYAH   SL  +L  ++    GRI++V G  G++ + +R   G +     ++  I+T
Sbjct: 343 VFVDYAHNGVSLANLLSVVQEHQKGRIVLVLGATGNKGESRRKDFGLLINQHPELMVILT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHI 474
            D+P  EDP  I  EI   I   ++   +R EAI+ A+ + +K+ D +++AGKG +   I
Sbjct: 403 ADDPNYEDPIAIAKEIASYISFDVDMIADREEAIKKALGLTSKKGDAVILAGKGADCYQI 462

Query: 475 VTNGEK 480
           + NG+K
Sbjct: 463 I-NGKK 467


>gi|254458836|ref|ZP_05072260.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
 gi|207084602|gb|EDZ61890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
          Length = 431

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 190/409 (46%), Gaps = 52/409 (12%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-----NR 161
           + L+G     I+ +TGT+GK++ AS +       G   ++     T   F  D       
Sbjct: 54  AELFGIDKIKIVGITGTNGKTTTASAIYSFLLDLG---YKTAMQGTRGFFMNDEVIEGKS 110

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTPS +   K +      G     +E SSH + Q R++G+K      TN+ +DH+DYH+
Sbjct: 111 LTTPSVLNTYKHIYQAVESGCEFFIMEVSSHAIAQERIEGLKFELKILTNITQDHLDYHK 170

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR----------VLSVG 271
           T   Y   K   F++    E   +I  D+  S   +K     G             L+  
Sbjct: 171 TIGEYIAVKNSFFQD----EGKKLINKDEPRSAFNIKNTFTYGIENPASYKLMAYSLNNA 226

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
             G   H K+V                   F   L G F +YN + A G  + + +D  L
Sbjct: 227 SSGIIQHFKEVVP-----------------FTSSLHGFFNLYNLMAAIG-AVDLLVDEKL 268

Query: 332 --VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             ++E ++    V GR E V        + VD+AHT + ++ +L  ++      ++VVFG
Sbjct: 269 EKIVEVVDNFAGVSGRMEQV---CELPNVIVDFAHTPDGMQQVLNALK---EKELLVVFG 322

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRI 446
            GGDRD+ KRP+MG++A  LA    +T DNPR+EDP+ I  +I+ GI        + NR 
Sbjct: 323 AGGDRDKQKRPLMGRVAASLAKKVYITSDNPRNEDPQAIVDDILEGIEDRSIVSVELNRK 382

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +AI  A++   + +V+V+ GKG E   I+ + +     D +++RE+L +
Sbjct: 383 KAIEMALDDQGEGEVVVILGKGDEAFQIIYDKQFPFD-DREVVRELLNI 430


>gi|330895233|gb|EGH27571.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 297

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/282 (36%), Positives = 150/282 (53%), Gaps = 19/282 (6%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL RDH+DYH T +AY  AK +LF    P     +I  DD + +E+      +     
Sbjct: 6   LTNLSRDHLDYHGTMEAYAAAKAKLFA--WPDLKCRVINLDDDFGRELAAVKQESRLITY 63

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S      +++ +      +  + T ++ +G+ F     L G F + N L A G  +  G+
Sbjct: 64  SQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNLSNVLAAVGALL--GL 120

Query: 328 DSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           D AL  +L+ L KL    GR + +G   +   + VDYAHT ++LE +L+ +R    GR++
Sbjct: 121 DYALDEILKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPHAKGRLL 179

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN- 444
            +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I    PGF+     
Sbjct: 180 CLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI---RPGFVAADKV 236

Query: 445 -----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                R +AI   I   N  DV+V+AGKGHE    + NG+++
Sbjct: 237 RFIEGRGQAIAELIASANANDVVVLAGKGHEDYQEI-NGQRQ 277


>gi|320547339|ref|ZP_08041630.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448037|gb|EFW88789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
          Length = 483

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 146/510 (28%), Positives = 239/510 (46%), Gaps = 51/510 (10%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDG 56
           K  D++ KD  F E+I   + + + W E    +++S DSR + +  +F A      KE  
Sbjct: 6   KTLDILKKDHNFREIIFH-NHYSLDWEENPSFSKISFDSRDVDSSTLFFAKGATFKKE-- 62

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
             ++ QA+  G    V    Y L         + P ++V + +K +SL A   YG HPE 
Sbjct: 63  --YLEQAVQLGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYG-HPEE 110

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              I+A TGT GK++ A F   I ++S   + F    T+        ++LTTP  + L K
Sbjct: 111 KLKIIAFTGTKGKTTAAYFTYNILKQSHKPAMFSTMNTTLDGKTFFKSKLTTPESLDLFK 170

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAK 230
            ++     G+TH+ +E SS      R+ G+    G+F N+  DHI    H T + YF  K
Sbjct: 171 MMATAVDNGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK 230

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            RL   L+      ++ A   Y K V ++  +        G +           I N + 
Sbjct: 231 -RL---LMTNSKAVVVNAGMDYFKVVTQQVADKPHDFYGSGSEN---------TIENGRA 277

Query: 291 VTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               V GK    +D    L G F   NAL A   C+ +G     + + + +  V PGR E
Sbjct: 278 FDFDVTGKLAGHYDI--QLIGSFNQENALAAGLACLRLGTSLKDIKKGISETSV-PGRME 334

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V T + G +++VDYAH  +SLE +L  +     G++ ++ G  G++ + +R    +I  
Sbjct: 335 VV-TQANGAKVFVDYAHNGDSLEKLLSVVEEHQKGQLYLILGATGNKGESRRADFARIIN 393

Query: 408 DLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVV 464
              ++  I+T D+P  EDP+ I  EI   I   ++ + +R +AI  A+ +  N+ D +++
Sbjct: 394 AHQNLNVILTADDPNYEDPQAIAEEIASQITRSLDIQVDREKAIAKAMLLTKNENDAVII 453

Query: 465 AGKGHETVHIVTNGEKKMSV-DCDIIREIL 493
           AGKG +   IV NGE+     D +I ++ L
Sbjct: 454 AGKGADAYQIV-NGERTAYAGDLNIAKKYL 482


>gi|158834106|gb|ABW81858.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 148/280 (52%), Gaps = 11/280 (3%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH  
Sbjct: 9   TTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYHGD 68

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278
              Y  AK +LF     KE   II ADD   +  + +  +A    +       ++G+++ 
Sbjct: 69  MARYKAAKWQLFSTHHAKEK--IINADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLE 126

Query: 279 LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            K +   ++ Q +T+  +    +   +  L G F V N L+A    +A+      ++  +
Sbjct: 127 TKNIN--YHAQGITLRFDSSWGEGRLVSRLLGAFNVSNLLIALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDRP-TVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           GKR +MG IA   AD  +VTDD+PR+EDP  I A+I+ G+
Sbjct: 244 GKRALMGGIAEQWADHLVVTDDSPRTEDPGVIVADILSGL 283


>gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
 gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
          Length = 508

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 216/479 (45%), Gaps = 60/479 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I  ++ DSR +   ++F A+ G   +G  FI  AI +G+  IV ++     D     
Sbjct: 28  EVEILGLAYDSRCVSFNFVFFALPGLHFNGQKFIESAIQRGSNVIVHTNDIDFYD----- 82

Query: 87  RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
            SN   + VD  N ++F+S FA   Y +  +   I+ VTGT GKSSV  ++  + +  G 
Sbjct: 83  -SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGA 141

Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              ++G  ST+  F +D          R +TP    +   LS + +  V +  +E++SHG
Sbjct: 142 ---KVGFISTV--FLEDGSGTLVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHG 196

Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           LD    RL  I+      TN+  +H+++H T Q Y  AK+ LF          II  DD 
Sbjct: 197 LDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANFHGGFGIINMDDN 256

Query: 252 YSKEVMK----------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +    M           +   A   +  +  Q  F   +     HNK +    V      
Sbjct: 257 HFSVFMNSINRTYTYSLKNEKADFFISKINEQMGFTEFE---FYHNKIKYAARVN----- 308

Query: 302 FLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               L G F V N + A  +   I  +D + ++  L  +  + GR + +        I V
Sbjct: 309 ----LTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQDINFGQDFSLI-V 363

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT  +   +    + +   R+I VFG  G+RD  KR + G+IA + +D+ I+ D++P
Sbjct: 364 DYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEYSDVIILCDEDP 423

Query: 421 RSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           R ED  +I  +I  GI          FI   +R  AI  AI +    D++V  GKGHE+
Sbjct: 424 RGEDSMQIIRDIAEGIVTKTLNKDLFFIP--DRKCAIEKAINIACSDDLVVTLGKGHES 480


>gi|149922806|ref|ZP_01911230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica
           SIR-1]
 gi|149816349|gb|EDM75851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica
           SIR-1]
          Length = 455

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 209/458 (45%), Gaps = 61/458 (13%)

Query: 71  IVVSSAYSLQDFSATIRSN-----TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
           +VV  A+    FSA + ++     TP LV+    + L + A+  +G   E  ++  +TGT
Sbjct: 1   MVVDEAH----FSAAVEADPDLAHTPRLVLRGLGEHLPVLAAAWHGWPGEALSLAGITGT 56

Query: 124 SGKSSVASFVQQICQ--RSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYL 177
           +GK++ A  +  I    R G    ++G   T  ++  D  +    TTP P+ L   L+  
Sbjct: 57  NGKTTTAHLLGAIASHPRGGRPHLRLG---TTGNWLVDREVHAGFTTPFPVELQALLAEA 113

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G     +E SSH L Q R   ++  A + T+  +DH+D+H    AY  AK  L    
Sbjct: 114 HDRGARCGVMEVSSHALAQGRAKPLRYRAVALTSFSQDHLDFHPDMAAYLEAKCELARRH 173

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------- 290
           L  +  A+         E  + +        + G + ++   +       K Q       
Sbjct: 174 LHVDGLAVA------PLEQGRASEAFLAAAEAAGVERRWRTARSAAGAGAKAQLRVEAQL 227

Query: 291 ---------VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKL 339
                    V ++      D   PL G F + N +V   + +A+G+D  L  + + L   
Sbjct: 228 PLQPGEGTAVRVATPAGALDLRSPLVGAFNLDNLMVT--VALALGLDFGLDTIADALRAA 285

Query: 340 HVVPGRFEFVGTNSRGG-RIYVDYAHTSN----SLEMILKNIRTITSGRIIVVFGCGGDR 394
              PGR E V      G  +YVDYAHT +    SLE  L++ R    GR +VV GCGGDR
Sbjct: 286 TGAPGRLEAVALPGVAGPAVYVDYAHTPDAVARSLEA-LEHARRARGGRTVVVLGCGGDR 344

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIE 447
           D  KRP+MG++A   A     T DNPR+EDP  I  ++I G  G        + + +R  
Sbjct: 345 DPSKRPLMGEVASRGAQRFWATSDNPRTEDPASIVDQMIAGALGPDAGGAELVREVDRAR 404

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           AI +AI     +DV+++AGKGHE   ++  GE K+  D
Sbjct: 405 AIASAIAEAAAEDVVLIAGKGHEDYQVI--GETKIHFD 440


>gi|322379099|ref|ZP_08053501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter suis HS1]
 gi|321148471|gb|EFX42969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter suis HS1]
          Length = 446

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 188/386 (48%), Gaps = 36/386 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
           I+ +TGT+GK++ AS +  +    G S   +G        S  +   LTTPS + +   +
Sbjct: 66  IIGITGTNGKTTTASLIYSLLLDLGYSCALLGTRGFFFNDSCLKQKGLTTPSLLEVYANI 125

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +++G  +  +E SSH ++Q R+ G+   A   TN+  DH+DYH   + Y     R+ 
Sbjct: 126 EQATNRGAHYFVMEVSSHAINQERILGLDFSAKVITNITSDHLDYHGNLEEY----RRVK 181

Query: 235 EELLPKESPAIIYADDAYSKEVMKRA------HNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              L  ES  II  DDA+ +   K A      H     V +   QG   H   +C     
Sbjct: 182 NAFLSDESLKIINRDDAFVRFNPKNAYGYAIEHKTHLSVNAYSLQGLSAH---ICFTEKP 238

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRF 346
            +   S E ++     PL G   +YN L+A  LC+ +    +L  + + +     V GR 
Sbjct: 239 GRYQNS-EFEEGLLYSPLVGRHNLYN-LLAGILCVKLLTKKSLKTLCDLIPHFLGVKGRM 296

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V        + VD+AHT++  E I  + +T    +I  +FG GG+RD+ KRP+MG IA
Sbjct: 297 EVVHEQPL---VIVDFAHTADGFEQIFNSFKT---RKIKALFGAGGNRDKSKRPLMGAIA 350

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQ 459
              A    +T DNPR E+P  I  +I+ GI   +EK +++       +AI  A++ L   
Sbjct: 351 CKYASKVYITSDNPRYEEPMAIMQDILVGIA--VEKRDKVILEIDRYKAICLALQELKSD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVD 485
           ++L++ GKG E+V I+  G+K +  D
Sbjct: 409 EILLILGKGDESVQII--GDKTIPFD 432


>gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
 gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
          Length = 481

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 151/513 (29%), Positives = 237/513 (46%), Gaps = 64/513 (12%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFI 60
           D++ KD  F E+I+Q   +   + +   + +S DSR ++   +F A      KE    F+
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVKEDTLFFAKGAAFKKE----FL 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI+QG    V    Y +           P+++V++ +K +SL A   YG   E   IL
Sbjct: 64  ISAISQGLGWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKIL 114

Query: 119 AVTGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           A TGT GK++ A F   I  QR      S +++   G T   SSF      +TP  I L 
Sbjct: 115 AFTGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGKTFFKSSF------STPENIDLF 168

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNA 229
             ++     G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  
Sbjct: 169 DMMAQAVKNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYH 228

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K      LL + S A+I   D     V+K       +V +  +   F   +    I N +
Sbjct: 229 K-----RLLMENSRAVIINSDMDHFSVLKE------QVENQDHD--FYGSQSSNQIENSK 275

Query: 290 QVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVP 343
             + S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VP
Sbjct: 276 AFSFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVP 329

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G
Sbjct: 330 GRME-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFG 388

Query: 404 KIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-D 460
            +     +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D
Sbjct: 389 LLLNQHPEIQVFLTADDPNYEDPMTIADEISSYINHPVEKIADRQEAIKAAMAITNHELD 448

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +++AGKG +   IV   ++    D  +    L
Sbjct: 449 AVIIAGKGADCYQIVQGKKEAYPGDAAVAENYL 481


>gi|157736775|ref|YP_001489458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
 gi|157698629|gb|ABV66789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
          Length = 429

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 177/351 (50%), Gaps = 40/351 (11%)

Query: 157 AQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +D  LTTP    + +++ KA+      G     +E SSH ++Q+R++G+       TN+
Sbjct: 103 VEDYSLTTPIQLGNFVHIQKAIQ----NGCQFFVMEVSSHAIEQNRIEGLTFALKIHTNI 158

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            RDH+DYH+T + Y    +R+    L  ES  ++  DD   K     A     + LS   
Sbjct: 159 TRDHLDYHKTIEEY----IRVKNSFLSDESVKLVNIDDNVMKYNFTNAFTYSLKNLSDYK 214

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL- 331
             K+          +  +V  S + K + F   + G F +YN L+A+   + I    +L 
Sbjct: 215 VTKY-------EFEHGMKVEFSYKEKTYTFTSMMMGIFNIYN-LMASIAAVHITTQKSLE 266

Query: 332 -VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L+    V GR E V  N     + VD+AHT + ++ +LK   +  +  II VFG 
Sbjct: 267 DICQTLKNFSCVSGRMEIVSLNPL---VIVDFAHTPDGMDEVLK---SFPNKDIICVFGA 320

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------ 444
           GG+RD  KRP+MG++A   +   IVT DNPR E+P+ I  +I+ GI    +K N      
Sbjct: 321 GGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGIN---DKSNVEVLID 377

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494
           R EA++ AI + N++ V++V GKG E   I+  G+KK    D D + +IL 
Sbjct: 378 RKEALKKAISLANEKSVILVLGKGDEATQII--GDKKFEFSDKDEVLKILN 426


>gi|315635954|ref|ZP_07891215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
 gi|315479738|gb|EFU70410.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
          Length = 429

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 177/351 (50%), Gaps = 40/351 (11%)

Query: 157 AQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +D  LTTP    + +++ KA+      G     +E SSH ++Q+R++G+       TN+
Sbjct: 103 VEDYSLTTPIQLGNFVHIQKAIQ----NGCQFFVMEVSSHAIEQNRIEGLTFALKIHTNI 158

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            RDH+DYH+T + Y    +R+    L  +S  ++  DD   K     A     + LS   
Sbjct: 159 TRDHLDYHKTIEEY----IRVKNSFLSDDSVKLVNIDDNVMKYNFTNAFTYSLKNLSDYK 214

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL- 331
             K+          +  +V  S + K + F   + G F +YN L+A+   + I    +L 
Sbjct: 215 VSKY-------EFEHGMKVEFSYKEKTYTFTSMMMGIFNIYN-LIASIAAVHITTQKSLE 266

Query: 332 -VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L+    V GR E V  N     I VD+AHT + ++ +LK   +  +  II VFG 
Sbjct: 267 DICQTLKNFSCVSGRMEIVSLNPL---IIVDFAHTPDGMDEVLK---SFPNKDIICVFGA 320

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------ 444
           GG+RD  KRP+MG++A   +   IVT DNPR E+P+ I  +I+ GI    +K N      
Sbjct: 321 GGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGIN---DKSNVEVLID 377

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494
           R EA++ AI + N++ V++V GKG E   I+  G+KK    D D + +IL 
Sbjct: 378 RKEALKKAISLANEKSVILVLGKGDEATQII--GDKKFEFSDKDEVLKILN 426


>gi|118586530|ref|ZP_01543973.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
 gi|118433034|gb|EAV39757.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
          Length = 499

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 208/434 (47%), Gaps = 39/434 (8%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRS--------NTPILVVDNTRKFLSLFASRLYGKHPE 115
           + +GA  I   +A  L   S  + S        N P  +V N++  L++ ++  +  HPE
Sbjct: 49  VVKGAFKIEYLTASLLDKISGIVTSRTEKIDLPNLPHWIVSNSQIALAVLSAEFF-VHPE 107

Query: 116 N---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSP 167
               IL +TGT GK+S       +  R  L++ Q    STI +F        + LTTP  
Sbjct: 108 KKLKILGITGTKGKTSSTYMAYSLLDR--LTNHQTAMFSTIDTFLGRGIKFKSELTTPES 165

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQA 225
             L   +      G  ++ +E SS    ++R+ GI    G+F N+  DHI  + H T   
Sbjct: 166 YELFSNMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFAD 225

Query: 226 YFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKK 281
           Y   K     ++L + S   +   DDA+ +E +  A + G + +SV    K     H+KK
Sbjct: 226 YLAHK-----KMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKK 280

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             A  ++    ++ +G   +FL  +PG F +YNA VA  +   +G       + L +L +
Sbjct: 281 --ADLDESVFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI 338

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400
            PGR   + T S G  I VDYAH   ++  +L  +++    G+II+V G  GD+ + +R 
Sbjct: 339 -PGRMVKIKTKSHG-LIIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRS 396

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456
             G++     D+A +T D+P +EDP +I  +I   I        E+ +R +AI+ AI+  
Sbjct: 397 QFGEVISKFVDVAYLTTDDPGTEDPHQINNQIRKAISNPDVELHEELDRSKAIQAAIKKA 456

Query: 457 NKQDVLVVAGKGHE 470
           N  D++V+A KG +
Sbjct: 457 NTNDLVVLAAKGED 470


>gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 484

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 218/473 (46%), Gaps = 22/473 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   L  F  Q     I   S++S H+Q   +FV   G   D H +I  AI  GA AI+ 
Sbjct: 2   LSETLKSFLKQLGALSIRRFSTNSEHVQCQDVFVCREGTSHDSHRYIESAITNGAVAIIA 61

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVA 130
           +           I ++ P+ V  +   + SL   + + ++P   +    +TGT+GK++VA
Sbjct: 62  TKP---------ISASVPVFVTGS--YYQSLLLIKAFYQYPHKKIRHIGITGTNGKTTVA 110

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + Q+ +    S++ IG      +   Q+   TTP  + L      ++   VT   +E 
Sbjct: 111 HGLNQVLKTKRQSAY-IGTLGVEYAGNKQELSNTTPDSVTLLNLFKDMADAQVTDNVMEL 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH L Q R   + L  G  TN+GRDH+DYH+T   Y  AK+++ + + P  + A+I  D
Sbjct: 170 SSHALVQDRAGFVPLSVGVITNIGRDHLDYHKTLDGYVQAKLQILDRIQPNGT-AVINLD 228

Query: 250 DAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D ++   ++RA         S+      ++++ +          ++ +G        LP 
Sbjct: 229 DHHANVAIERACSRVNVLTFSMNNSEADLYVEDLNVEPFGATFVLNNQGNKERVFSQLPF 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L  A   +A+    A +   L  +    GR +++  ++ G    VDYAH  + 
Sbjct: 289 LFNVENTLAMAATLLALNWSLADIANALNSVVAPDGRSKYLSLDN-GALALVDYAHNFDG 347

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  + + I++ ++ R+I V G  GDR +    I GK+    +D+ I T DNP  E  E I
Sbjct: 348 LTALYQGIQSQSAKRVITVVGVTGDRIRDAADI-GKLCATHSDVVIFTSDNPLGEMQEDI 406

Query: 429 -RAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            RA      P    E  +R EAI+ A ++    D+++V GKG ET   +T  +
Sbjct: 407 FRALTSQVSPTLCYEISDRYEAIQLAKQLSRGGDLILVCGKGSETHQYITTNQ 459


>gi|296272311|ref|YP_003654942.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096485|gb|ADG92435.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 425

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 185/373 (49%), Gaps = 39/373 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPI--- 168
           ++ +TGT+GK++ A+ +  +    G   +++    T   F  + R     LTTP  +   
Sbjct: 61  VIGITGTNGKTTTAAAIYSLLLDLG---YKVALQGTRGFFINEQRVEEYSLTTPVQLGNF 117

Query: 169 -YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
            ++ KA+            +E SSH ++Q R++G+       TN+ RDH+DYH+T + Y 
Sbjct: 118 AHIQKAIE----NSCDFFVMEVSSHAIEQKRIEGLNFELKILTNITRDHLDYHKTIEEYI 173

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           N K   F +    +S  +I  D     E+  + +   C  L+ G      +  +  +  +
Sbjct: 174 NVKNSFFND----DSKKLINKD-----EIKAKFNPKNC--LTYGLDSPSTYKVQAYSFKD 222

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGR 345
              V +    K   F   + G F VYN L AA   + +  + +L  + E +E    V GR
Sbjct: 223 GMHVALQNFEKVESFTSMMMGLFNVYN-LTAAIAAVHMTTNKSLNEICEAVENFAGVSGR 281

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E +  N     I VD+AHT + ++ +L   ++     IIVVFG GGDRD+ KRPIMGK+
Sbjct: 282 METLSLNPY---IIVDFAHTPDGMKEVL---QSFGHKDIIVVFGAGGDRDKAKRPIMGKV 335

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVL 462
           A   A   IVT DNPR EDP+ I  +I+ GI     +E + NR  AI+ AI++ ++  V+
Sbjct: 336 ADTFAKHIIVTSDNPRFEDPDLIIEDILEGINDKSKVEVEINRKIAIKKAIDLYSENSVI 395

Query: 463 VVAGKGHETVHIV 475
           +V GKG E    +
Sbjct: 396 LVLGKGDEEYQTI 408


>gi|313683411|ref|YP_004061149.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156271|gb|ADR34949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 431

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 186/375 (49%), Gaps = 25/375 (6%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTP 165
           +++G     ++ +TGT+GK++ AS +  +    G  +   G      + A  +   LTTP
Sbjct: 55  KVFGLDRIRVIGITGTNGKTTTASAIYSLLLDLGHKAAMQGTRGFFMNDAPVEGKTLTTP 114

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           + +   + ++   + G  +  +E SSH ++Q R+ GI       TN+ +DH+DYH++ + 
Sbjct: 115 TVLNTYRHMAQAIASGCEYFVMEVSSHAIEQERIAGITFALKILTNITQDHLDYHESIEE 174

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y   K   F++    ES  +I  D+  ++   K A        + G +    +     ++
Sbjct: 175 YTRIKNLFFQD----ESKKLINKDEGKAEFNFKNA-------FTYGVENPATYKIIAYSL 223

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVP 343
           +N     +        F+  L G F +YN + AA   + +  D +L  + + +E    V 
Sbjct: 224 NNGVSGVLKYFEDHVPFVSSLHGFFNLYN-ITAAMAAVHLVTDESLEKIADVVENFGGVS 282

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E V   S    + VD+AHT + +E +L  ++      ++VVFG GGDRD+ KRP+MG
Sbjct: 283 GRMEVV---SESPLVIVDFAHTPDGMEQVLNALK---EKEVLVVFGAGGDRDRKKRPLMG 336

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQD 460
           K+A+  A    VT DNPR EDP+ I  +I+ GI      +   NR  AI  A++  +  +
Sbjct: 337 KVAVAYAKKVYVTSDNPRFEDPDAIIEDILAGIEDKSNVVVDVNRRSAIAQALKERSGDE 396

Query: 461 VLVVAGKGHETVHIV 475
           V+++ GKG ET  I+
Sbjct: 397 VVLILGKGDETSQII 411


>gi|319955885|ref|YP_004167148.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
 gi|319418289|gb|ADV45399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
          Length = 434

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 175/349 (50%), Gaps = 39/349 (11%)

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           ++  +TTPS +     +      G  +  +E SSH +DQ R++G+       TN+ RDH+
Sbjct: 105 EEKHMTTPSILETLWNMKRAKEAGAEYFVMEVSSHAIDQDRIEGLDFALKVHTNVTRDHL 164

Query: 218 DYHQTQQAYFNAKMRLFEE----LLPK-ESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVG 271
           DYH T + Y   K   F +    LL K E  +I +   +AY+  V      A  +VL+  
Sbjct: 165 DYHGTLEEYRRVKSLFFSDDSLKLLNKDEIKSITFNPKNAYTYGV---EEPATFKVLAYS 221

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            Q     +  V     +Q+           F   + G F +YN L+AA   + +  D  L
Sbjct: 222 LQN---GISAVVQFRQEQEA----------FFSNMMGLFNLYN-LLAAIASVKLLTDRPL 267

Query: 332 --VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +E    V GR E V        I VD+AHT + +  +L +++      ++VVFG
Sbjct: 268 AEICDVVENFGGVSGRMEVVSAKPT---IIVDFAHTDDGMYRVLDSLK---DKDLVVVFG 321

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----N 444
            GGDRD+GKRP MG +A   A    VT DNPRSEDPE I AEI+ G+ G  ++G     +
Sbjct: 322 AGGDRDRGKRPRMGAVAGRFAKKIYVTSDNPRSEDPEAIIAEILQGLKG--KEGVRAIVD 379

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R EAI  AI+ L + ++L++ GKG E+   +  G K    D +++R+IL
Sbjct: 380 RREAIERAIDELQEDEILLILGKGDESTQEIA-GVKHPFDDREVVRQIL 427


>gi|323487947|ref|ZP_08093203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
 gi|323398371|gb|EGA91161.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
          Length = 499

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 218/465 (46%), Gaps = 29/465 (6%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           F  + G   DGHL+I +AIA GA  I+ S+   L ++ A    +    VV N R+ L+  
Sbjct: 40  FFCVPGENTDGHLYIGEAIANGATTIIGSNQLLLAEY-AKQHPDLSFAVVPNVREALAYL 98

Query: 106 ASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +   Y + P+  L    VTGT+GK++ A++V  +    G+    IG T  +     D ++
Sbjct: 99  SDFFY-RSPQKELIKVGVTGTNGKTTTATYVYNLFNLLGIGCGFIGTTGILR---MDGKI 154

Query: 163 -------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                  TTP    L K  +    +G   V++E SS  LDQ R++GI+      TN+  +
Sbjct: 155 PFYKSTPTTPISSDLHKIFARFVEEGDRAVAMEVSSIALDQMRVEGIRFDVAIHTNISEE 214

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQG 274
           H++YH+  + Y  +K+ LF++       A++  DD   +KE+++          +    G
Sbjct: 215 HLEYHKIFEHYLQSKLMLFKQ----SKAAVVNVDDKGMAKEILEVISYPHLTYSNRVDSG 270

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
             +      +     +  +  +G+ +    PL GE+   N   A G  +  G +   ++ 
Sbjct: 271 ADLIWTACESSDTGLKFDLYYKGERWPIHVPLFGEYNAANLTAAIGSALLSGQNIEAIVT 330

Query: 335 HLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            L K+  V GRF+ + G ++R  ++ +DYAHT  +L  +L  ++ ++  R+I +    G 
Sbjct: 331 VLPKMSQVEGRFQVIQGPDNR--KVILDYAHTPVALSAVLNEVKKLSHNRLIALIAGIGI 388

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IP---GFIEKGNRIEA 448
           RD  K P M K A   AD+ +VT D+P   +P  +   ++ G  +P     I   +R EA
Sbjct: 389 RDFSKMPKMAKAAEGKADVLVVTVDHPGDNEPSVVIDAVLKGFTVPYKQQVITANSRREA 448

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +  A++    +D+++++        IV  GE     D  II E  
Sbjct: 449 VLAALKESGPEDIILLSSGSINGAQIV-KGEYIPHSDEAIIEEFF 492


>gi|254479547|ref|ZP_05092864.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034515|gb|EEB75272.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 260

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 152/258 (58%), Gaps = 15/258 (5%)

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           ++I  DD YS  +++ +     +VL+ G +   ++  K++    +  +  + ++ K  + 
Sbjct: 7   SVINIDDKYSSMMIESSKG---KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEI 63

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361
              +PG F VYNAL A  +   +GI    V E L   HV V GRFE V T  R   +++D
Sbjct: 64  SLKIPGLFSVYNALAAITVADFLGIPLRSVREALS--HVTVKGRFEPVETG-RDFYVFID 120

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + +  I++ ++   +GR I+VFG GGDRD+ KRP+MG++A   AD  I+T DNPR
Sbjct: 121 YAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNPR 180

Query: 422 SEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           SE+P++I A+I  GI      ++   +R EAIR A+    K DV+++AGKGHET  I+  
Sbjct: 181 SENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQII-- 238

Query: 478 GEKKMSVD-CDIIREILG 494
           G+K +  D  +I++EIL 
Sbjct: 239 GDKVIPFDEREIVKEILA 256


>gi|306831982|ref|ZP_07465137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425908|gb|EFM29025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 483

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 225/495 (45%), Gaps = 60/495 (12%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + + W+E    +++S DSR      +F A      KE    ++ QAI  G    V    Y
Sbjct: 26  YSLDWKENPSFSKISFDSREADKSTLFFAKGATFKKE----YLEQAIENGLTFYVSQVDY 81

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
            L         + P ++V + +K +SL A   YG HPEN   I+A TGT GK++ A F  
Sbjct: 82  EL---------DIPAIIVTDIKKAMSLIAMEFYG-HPENDLKIIAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            I ++S   + F    T+        ++LTTP  + L K ++     G+TH+ +E SS  
Sbjct: 132 NILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQA 191

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               R+ G+    G+F N+  DHI    H T + YF  K      LL   S A++     
Sbjct: 192 YLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK-----RLLMANSKAVVV---- 242

Query: 252 YSKEVMKRAHNAGCRVLSVGYQG------KFIHLKKVCAIHNKQQVTISVEGK---DFDF 302
                     NAG    +V  Q        F        I N +     V GK    +D 
Sbjct: 243 ----------NAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYD- 291

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F   NA+ A   C+ +G   A + + + +   VPGR E + T + G +++VDY
Sbjct: 292 -IQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQTS-VPGRMEVI-TQTNGAKVFVDY 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPR 421
           AH  +SLE +L  +     G + ++ G  G++ + +R    ++     ++  I+T D+P 
Sbjct: 349 AHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTADDPN 408

Query: 422 SEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGE 479
            EDP+ I  EI   +   ++ + +R +AI  A+   N + D +++AGKG +   IV NGE
Sbjct: 409 YEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIV-NGE 467

Query: 480 KKMSV-DCDIIREIL 493
           + +   D +I +  L
Sbjct: 468 RTVYAGDLNIAKNYL 482


>gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
 gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
          Length = 509

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 183/413 (44%), Gaps = 29/413 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ DSR ++ G +FVAI G   DGH FI QAIA+GA A+VV   Y  +   A     
Sbjct: 26  VQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAIARGAVAVVVDQRYWDERPVAVPVVV 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                  ++R  L+  A+  Y  +P   L   G +G    ++      Q    +   +G 
Sbjct: 86  V-----ADSRVALAPLAAAFY-DYPGRELTTIGITGTKGKSTTTDVTAQLLAATGRMVGM 139

Query: 150 TSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDG 201
            ST+        +  D R +TP    +   L  + + G     +EA+SH L     RL G
Sbjct: 140 ISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMVTAGCDTAVIEATSHALSPRWGRLVG 199

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259
                    N+G +H+DYH T + Y   K +LF  L  +     AI+ ADD      +  
Sbjct: 200 CAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSGSRWAIVNADDPNHAYFLDA 259

Query: 260 AHNAGCRVL-----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           A     R+          QG+ +H   + ++     V ++      D   PLPG F   N
Sbjct: 260 APADAVRLRYGLHEPADVQGQILHSGPMSSV-----VRVTSPWGTTDLTVPLPGRFNASN 314

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMIL 373
           AL A  L +A+    AL         V   R   V  ++ +   + VDYAH  +S E I 
Sbjct: 315 ALAA--LTVALSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIVDYAHNPDSFEQIF 372

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +R    GR+I VFG  G+RD  KR I G+IA  + D+ ++TD++PR ED E
Sbjct: 373 AMLRPQVQGRMIAVFGSAGERDVAKRAIQGEIAGRMCDLLVLTDEDPRGEDRE 425


>gi|306834104|ref|ZP_07467224.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
 gi|304423677|gb|EFM26823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
          Length = 483

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 224/495 (45%), Gaps = 60/495 (12%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + + W+E    +++S DSR      +F A      KE    ++ QAI  G    V    Y
Sbjct: 26  YSLDWKENPSFSQISFDSREADKSTLFFAKGATFKKE----YLEQAIENGLTFYVSQVDY 81

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
            L         + P ++V + +K +SL A   YG HPEN   I+A TGT GK++ A F  
Sbjct: 82  EL---------DIPAIIVTDIKKAMSLIAMEFYG-HPENDLKIIAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            I ++S   + F    T+        ++LTTP  + L K ++     G+TH+ +E SS  
Sbjct: 132 NILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQA 191

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               R+ G+    G+F N+  DHI    H T + YF  K      LL   S A++     
Sbjct: 192 YLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK-----RLLMANSKAVVV---- 242

Query: 252 YSKEVMKRAHNAGCRVLSVGYQG------KFIHLKKVCAIHNKQQVTISVEGK---DFDF 302
                     NAG    +V  Q        F        I N +     V GK    +D 
Sbjct: 243 ----------NAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYD- 291

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F   NA+ A   C+ +G   A + + + +   VPGR E + T + G +++VDY
Sbjct: 292 -IQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQTS-VPGRMEVI-TQTNGAKVFVDY 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPR 421
           AH  +SLE +L  +     G + ++ G  G++ + +R    ++     ++  I+T D+P 
Sbjct: 349 AHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTADDPN 408

Query: 422 SEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGE 479
            EDP+ I  EI   +   ++ + +R +AI  A+   N + D +++AGKG +   IV NGE
Sbjct: 409 YEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIV-NGE 467

Query: 480 KKMSV-DCDIIREIL 493
           +     D +I +  L
Sbjct: 468 RTAYAGDLNIAKSYL 482


>gi|288905963|ref|YP_003431185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Streptococcus gallolyticus UCN34]
 gi|288732689|emb|CBI14261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gallolyticus UCN34]
          Length = 483

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 138/489 (28%), Positives = 224/489 (45%), Gaps = 48/489 (9%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + + W+E    +++S DSR      +F A      KE    ++ QAI  G    V    Y
Sbjct: 26  YSLDWKENPSFSKISFDSREADKSTLFFAKGATFKKE----YLEQAIENGLTFYVSQVDY 81

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
            L         + P ++V + +K +SL A   YG HPEN   I+A TGT GK++ A F  
Sbjct: 82  EL---------DIPAIIVTDIKKAMSLIAMEFYG-HPENDLKIIAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            I ++S   + F    T+        ++LTTP  + L K ++     G+TH+ +E SS  
Sbjct: 132 NILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQA 191

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               R+ G+    G+F N+  DHI    H T + YF  K RL   L+      ++ A   
Sbjct: 192 YLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK-RL---LMANSKAVVVNAGMD 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPG 308
           Y   V ++  N        G             I N +     V GK    +D    L G
Sbjct: 248 YFNIVAQQVANTPHDFYGKGSDN---------TIENGRAFDFDVTGKLAGHYD--IQLIG 296

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F   NA+ A   C+ +G   A + + + +   VPGR E + T + G +++VDYAH  +S
Sbjct: 297 SFNQENAVAAGLACLRLGTSLADIQKGIAQTS-VPGRMEVI-TQTNGAKVFVDYAHNGDS 354

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEK 427
           LE +L  +     G + ++ G  G++ + +R    ++     ++  I+T D+P  EDP+ 
Sbjct: 355 LEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTADDPNYEDPQA 414

Query: 428 IRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSV- 484
           I  EI   +   ++ + +R +AI  A+   N + D +++AGKG +   IV NGE+     
Sbjct: 415 IAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIV-NGERTAYAG 473

Query: 485 DCDIIREIL 493
           D +I +  L
Sbjct: 474 DLNIAKNYL 482


>gi|78776533|ref|YP_392848.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
 gi|78497073|gb|ABB43613.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 433

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 191/396 (48%), Gaps = 30/396 (7%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-----NR 161
           ++L+G     I+ +TGT+GK++ AS +       G   +++    T   F  D       
Sbjct: 54  AKLFGIEKIKIVGITGTNGKTTTASAIYSFLLDLG---YRVAMQGTRGFFMNDRVIEEKT 110

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTPS +   K +    S+      +E SSH + Q R++G+       TN+ +DH+D+H+
Sbjct: 111 LTTPSLLNTYKHIYQAVSEKCDFFIMEVSSHAIVQKRVEGLNFELKILTNITQDHLDFHK 170

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T   Y   K   F++    +   +I  D+  S    K          + G +    +   
Sbjct: 171 TLGEYIAVKNSFFQD----DGRKLINKDETKSSFNFKNT-------FTYGIENSATYRLI 219

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLH 340
             +++N     I    +   F   L G F +YN + A A   +  G     V   ++   
Sbjct: 220 AYSLNNASSGIIQHFSEVVPFTSSLHGFFNLYNLMAAIAATHLLSGKKLEEVTAVVDNFA 279

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR E V   S    + VD+AHT + ++ +L  ++      ++VVFG GGDRD+ KRP
Sbjct: 280 GVSGRMEQV---SESPNVIVDFAHTPDGIQQVLNALK---EKELLVVFGAGGDRDRTKRP 333

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLN 457
           +MG++A  LA    +T DNPR+EDP+ I  +I+ GI     ++ + NR +AI  A+    
Sbjct: 334 LMGRVAASLAKKLYITSDNPRTEDPQDIVNDILEGIQDKSIVQVELNRRKAIENALSEQK 393

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + +V+V+ GKG ET  I+ + +K    D +++REIL
Sbjct: 394 ENEVVVILGKGDETYQIIYD-QKFPFDDREVVREIL 428


>gi|312868464|ref|ZP_07728664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
 gi|311096209|gb|EFQ54453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
          Length = 481

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 223/477 (46%), Gaps = 43/477 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR I A  +F     N +  +L   QAI+ G    V     S +D+   I   
Sbjct: 35  FDAISYDSRKISASTLFFVKGANFKKEYL--EQAISNGLGFYV-----SEKDYEVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P ++V++ ++ +SL A   YG HPE    +LA TGT GK++ A F   I ++S   +  
Sbjct: 85  -PAILVNDIKQAMSLIAMEFYG-HPEKQLKLLAFTGTKGKTTAAYFAYHILKQSHRPAML 142

Query: 147 IGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L   ++   +   TH+ +E SS      R+ G+  
Sbjct: 143 STMNTTLDGKNFFK-STLTTPESLDLFAMMAEAVANDRTHLIMEVSSQAYLVKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL K S A++   D     V+K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMKNSQAVVINSDMDHFSVLKEQVE 256

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
                     +  F   +    I N +  + S  GK   D+D    L G F   NA+ A 
Sbjct: 257 --------DQEHDFYGSQSENQIENSKAFSFSATGKLAGDYDI--QLIGHFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             C+ +G     + + + K  V PGR E V T   G ++++DYAH  +SL+ +L  + T 
Sbjct: 307 LACLRLGASLEDIQKGIAKTRV-PGRME-VLTQKNGAKVFIDYAHNGDSLKKLLSVVETH 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
            +G I +V G  G++ + +R   G +  D  +I + +T D+P  EDP  I  EI   I  
Sbjct: 365 QTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYEDPLAIAEEISSFITR 424

Query: 439 FIEK-GNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +EK  +R EAI+ A+   +K +D +++AGKG +   IV   +++   D  I    L
Sbjct: 425 PVEKIADREEAIQRAMATTSKPEDAVIIAGKGADCYQIVNGIKEEYPGDAAIAERYL 481


>gi|116627264|ref|YP_819883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMD-9]
 gi|122268133|sp|Q03M85|MURE_STRTD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116100541|gb|ABJ65687.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus thermophilus
           LMD-9]
 gi|312277751|gb|ADQ62408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus thermophilus ND03]
          Length = 481

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 234/506 (46%), Gaps = 62/506 (12%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGA 68
           +F ++INQ   +   W     + +S DSR I    +F A   G K +   F+  A+  G 
Sbjct: 16  NFRDIINQ-EYYYYSWTGVTFDHLSYDSRDITPSTLFFAKGAGFKLE---FLESAVQAGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125
              V    Y +           P ++V + ++ +SL A   Y +HP++   +LA TGT G
Sbjct: 72  GFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFY-QHPQDKLKLLAFTGTKG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ + F   I ++S   +      +T+   +F + N LTTP  + L + ++   S G+T
Sbjct: 122 KTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSN-LTTPESLDLFRMMAEAVSNGMT 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS      R+ G+    G F N+  DHI    H T + YF  K      LL K 
Sbjct: 181 HLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLKN 235

Query: 242 SPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           S A+I        D  ++EV  + H+         + GK         + +    +   +
Sbjct: 236 SQAVIVNSGMNHFDFVAEEVADKDHD---------FYGK----DSENTVKHSSGFSFKAK 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G+F   NA+ A   C+ +G      LE ++K      VPGR E + 
Sbjct: 283 GKLAGDYDI--QLIGDFNQDNAMAAGLACLRLGAS----LEDIKKGIAQTSVPGRMEIL- 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T + G +++VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     
Sbjct: 336 TQANGAKVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYP 395

Query: 411 DI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGK 467
           +I  I++ D+P  EDP  I  EI   I   +    +R EAI+TA+ E     D LV+AGK
Sbjct: 396 EINVILSTDDPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   IV       + D ++ ++ L
Sbjct: 456 GADAFQIVNGKRTDYAGDIEVAKKYL 481


>gi|171780226|ref|ZP_02921130.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281574|gb|EDT47009.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 483

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 147/512 (28%), Positives = 242/512 (47%), Gaps = 55/512 (10%)

Query: 2   KLQDLIYKD--FPELI--NQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKE 54
           K  +++ KD  F E+I  NQ S   + W+E    +++S DSR + +  +F A      KE
Sbjct: 6   KTLEILKKDHNFREIIFHNQYS---LTWKENPSFSKISFDSRDVDSSTLFFAKGATFKKE 62

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
               ++ QAI +G    V    Y L         + P ++V + +K +SL A   YG HP
Sbjct: 63  ----YLEQAIQKGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYG-HP 108

Query: 115 E---NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYL 170
           E    I+A TGT GK++ A F   I ++S   + F    T+        ++LTTP  + L
Sbjct: 109 EEKLKIIAFTGTKGKTTAAYFAYNILKQSHKPAMFSTMNTTLDGKTFSKSKLTTPESLDL 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228
            K ++     G+TH+ +E SS      R+ G+    G+F N+  DHI    H T + YF 
Sbjct: 169 FKMMATAVDNGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFY 228

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K RL   L+      ++ A   + K V ++  +     L   + GK         I N 
Sbjct: 229 HK-RL---LMANSKAVVVNAGMDHFKVVAEQVAD-----LPHDFYGK----DSDNTIENG 275

Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +     V GK    +D    L G F   NAL A   C+ +G     + + + +  V PGR
Sbjct: 276 RTFDFDVTGKLAGHYDI--QLIGSFNQENALAAGLACLRLGTSPEDIKKGIAETSV-PGR 332

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E + T + G +++VDYAH  +SLE +L  +    +G + ++ G  G++ + +R    ++
Sbjct: 333 MEVI-TQANGAKVFVDYAHNGDSLEKLLSVVEEHQTGNLHLILGATGNKGESRRADFARV 391

Query: 406 ALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVL 462
                ++  I+T D+P  EDP+ I  EI   +   +E + +R +AI  A+ +     D +
Sbjct: 392 INAHPNLQVILTADDPNYEDPKAIAEEIASQVNRPLEIEVDREKAIAKAMSLTQTADDAV 451

Query: 463 VVAGKGHETVHIVTNGEKKMSV-DCDIIREIL 493
           ++AGKG +   IV NGE+     D +I ++ L
Sbjct: 452 IIAGKGADAYQIV-NGERTAYAGDMNIAKKYL 482


>gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 641

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 144/534 (26%), Positives = 227/534 (42%), Gaps = 92/534 (17%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIR 87
           ++N VS DSR ++ G +FVA+ G K DGH +  QA+AQGA A+V+ +    L +   T  
Sbjct: 40  QVNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVLENLPPELIEADQTDL 99

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            +  +++V +T   L+     +YG      N+  +TGT GK++  + +  +  +    + 
Sbjct: 100 LSRGVIIVPSTAAVLTPLCREIYGTATITRNLHGITGTDGKTTTTAMITWLLNKVDYPAG 159

Query: 146 QIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            IG   T+ +   D R      TTP    L + L+ L + G   V +E SS    QHR+D
Sbjct: 160 SIG---TLGAKLPDGRNLPTAYTTPPAPELHRLLAQLQTNGARAVCMEVSSQAAVQHRVD 216

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMK 258
            +     +FTN   DH+DYH T + Y  AK  LF   L K + A++ ADD  AY    + 
Sbjct: 217 ALAWQTMTFTNFTVDHLDYHHTVENYALAKASLFRG-LSKAATAVLNADDPLAYYLAQLT 275

Query: 259 RAHNAGCRVL--SVGYQGKFIHLKK----------------------------------- 281
           +A      +   ++G +G F    K                                   
Sbjct: 276 QAQKVFYYIQDDALGSRGDFSQYIKDRSKILGKAWEKFMLEVQEKIPPESSREILCKAAA 335

Query: 282 ---------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCIAIGIDSA 330
                    V   ++  Q  IS   +      PL G F + NAL  +A  + I   ID  
Sbjct: 336 AGRVVAARNVKPTNSGWQAEISRGEETCTLTIPLLGRFNLNNALAAIATAMVICPNIDLR 395

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGG-------------------RIYVDYAHTSNSLEM 371
                +  +  VPGR E +    +                     R+ +D+AHT  ++E 
Sbjct: 396 TWAAAMATMPAVPGRLEIIDGQGQACPTCRPSNGKLNLEDTTTPYRVVIDFAHTPGAMEA 455

Query: 372 ILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +L  +R     + ++ V+    G+RD+GKRP++  +   LAD  ++T +    E+P +I 
Sbjct: 456 LLTEVRRHCCANKKLWVLANSCGNRDRGKRPLIAAVCERLADRIVLTLEEVGQENPAEIL 515

Query: 430 AEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           AE+     GF +  N      R EAIR  I  L   D  VV   G E  + + N
Sbjct: 516 AELQA---GFRQPENIPVVPLRQEAIRYVISRLEPGDYFVVPSLGDEHTYNINN 566


>gi|229816609|ref|ZP_04446907.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
 gi|229807815|gb|EEP43619.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
          Length = 518

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 139/487 (28%), Positives = 212/487 (43%), Gaps = 32/487 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I   + DSR +    +FV         +L   QA+A GA A V    Y +      +  
Sbjct: 36  EIAYATDDSRRVVPRTLFVCKGAAFRREYLL--QALAAGAVAYVSEVDYEVD---GEVGH 90

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSG---- 141
             P ++V++ R  L L A   Y  HP     + A TGT GK++ A +++ I         
Sbjct: 91  EVPRVLVNDIRTALGLLADAAY-DHPSGRVKVCAFTGTKGKTTSAYYLRSILSEHAREMG 149

Query: 142 --LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             + +   G          D+ LTTP    L +  +  +S G  HV +EASS  +   R 
Sbjct: 150 RPVPALLTGVEYDDGVERGDSLLTTPESFELERRFANAASVGCEHVVMEASSQAIKFRRT 209

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            G+    G+FTN G DHI    H T + Y  +K+ LFE    + +   +  D A      
Sbjct: 210 LGVDFAVGAFTNFGEDHISPIEHPTLEDYLESKLLLFERC--RVAVVNLDMDVAERALAA 267

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNA 315
             A     RVL+   +     +     +  ++ +  +V       + + P P  F + NA
Sbjct: 268 AHASRTVERVLTYSLEDAAADVFVPSYVRTERGIRATVRTPRIARELMIPSPAVFNLSNA 327

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMIL 373
           L A     A+GI +  +   L + +  PGR E   + S  GRI   VDYAH   SLE +L
Sbjct: 328 LGAIACAEALGISADAIETGLSRAY-APGRMELYPSES--GRIMGVVDYAHNGMSLETLL 384

Query: 374 KNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---- 428
           +++R     R   VVFG  G +   +R  MG+ A  LAD  ++T+D+P  EDP  I    
Sbjct: 385 RDLRASYPDREFAVVFGATGGKGVDRRETMGEAAGKLADRIVITEDDPGPEDPALICDAI 444

Query: 429 -RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            RA    G   +    +R EAIRTA+   +   V++V GKG++   +     +    D D
Sbjct: 445 ARAVSAQGNENWQVVLDRSEAIRTAVSETHAPAVVIVTGKGNDPFMLRNGVREPYEPDGD 504

Query: 488 IIREILG 494
            +R  L 
Sbjct: 505 QLRRALA 511


>gi|329117147|ref|ZP_08245864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326907552|gb|EGE54466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 483

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 232/489 (47%), Gaps = 53/489 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+F E++++ + +   +     + ++ DSR +    +F A     +  +L    AI  G 
Sbjct: 15  KNFREVLDKENYY-FNYSALTFSNLTYDSRKVDMSTLFFAKGAAFKAEYL--ESAIKLGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125
            A V    Y +           P ++V + +K +++ A   YG +P++   +LA TGT G
Sbjct: 72  TAYVSEVDYQV---------GIPAIIVTDIKKAMAIIAKDFYG-NPQDKLKLLAFTGTKG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ A F   I Q S   +      +T+   +F + ++LTTP  + L + +S +   G+T
Sbjct: 122 KTTAAYFAYNILQESHKPAMLSTMNTTLDGKTFFK-SQLTTPESLDLFQMMSTIVDNGMT 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L E      
Sbjct: 181 HLIMEVSSQAYLVERVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLME----NS 236

Query: 242 SPAIIYAD----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              II +D    D  +++V  + H+             F   +    I N Q  T S  G
Sbjct: 237 RAVIINSDMDHFDILAEQVANQEHD-------------FYGSQSENQILNSQAFTFSANG 283

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           K   D+D    L G+F   NA  A   C+ +G D   + + + +   VPGR E + ++  
Sbjct: 284 KMAGDYD--IQLIGKFNQENATAAGLACLRLGADLTDIKQGIARTS-VPGRMEVI-SHPS 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G +++VDYAH  +SLE ++  +     G I ++ G  G++ + +R   G++  +   + +
Sbjct: 340 GAKVFVDYAHNGDSLEKLVTVVEEHQKGNISLIIGATGNKGESRRADFGQVINNHPTLKV 399

Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHET 471
            +T D+P  EDP+ I  EI + +   +    +R +AI TAI+   K+ D L++AGKG + 
Sbjct: 400 YLTADDPNFEDPQDICQEIANHVNRSVSIIADRTKAISTAIKDCQKEGDALIIAGKGADA 459

Query: 472 VHIVTNGEK 480
             IV NG+K
Sbjct: 460 YQIV-NGQK 467


>gi|325978929|ref|YP_004288645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178857|emb|CBZ48901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 483

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 139/495 (28%), Positives = 224/495 (45%), Gaps = 60/495 (12%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + + W+E    +++S DSR      +F        KE    ++ QAI  G    V    Y
Sbjct: 26  YSLDWKENPSFSKISFDSREADNSTLFFTKGATFKKE----YLEQAIENGLTFYVSQVDY 81

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
            L         + P ++V + +K +SL A   YG HPEN   I+A TGT GK++ A F  
Sbjct: 82  EL---------DIPAIIVTDIKKAMSLIAMEFYG-HPENDLKIIAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            I ++S  ++ F    T+        ++LTTP  + L K ++     G+TH+ +E SS  
Sbjct: 132 NILKQSHKTAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMAIAVQNGMTHLIMEVSSQA 191

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               R+ G+    G+F N+  DHI    H T + YF  K      LL   S A++     
Sbjct: 192 YLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK-----RLLMANSKAVVV---- 242

Query: 252 YSKEVMKRAHNAGCRVLSVGYQG------KFIHLKKVCAIHNKQQVTISVEGK---DFDF 302
                     NAG    +V  Q        F        I N +     V GK    +D 
Sbjct: 243 ----------NAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYD- 291

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F   NA+ A   C+ +G   A + + + +   VPGR E + T + G +++VDY
Sbjct: 292 -IQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQTS-VPGRMEVI-TQTNGAKVFVDY 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPR 421
           AH  +SLE +L  +     G + ++ G  G++ + +R    ++     ++  I+T D+P 
Sbjct: 349 AHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTADDPN 408

Query: 422 SEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGE 479
            EDP+ I  EI   +   ++ + +R +AI  A+   N + D +++AGKG +   IV NGE
Sbjct: 409 YEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIV-NGE 467

Query: 480 KKMSV-DCDIIREIL 493
           +     D +I +  L
Sbjct: 468 RTAYAGDLNIAKNYL 482


>gi|55820442|ref|YP_138884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMG 18311]
 gi|55822326|ref|YP_140767.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus CNRZ1066]
 gi|81559795|sp|Q5M1B4|MURE_STRT1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81560965|sp|Q5M5V0|MURE_STRT2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|55736427|gb|AAV60069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus LMG 18311]
 gi|55738311|gb|AAV61952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus CNRZ1066]
          Length = 481

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 234/506 (46%), Gaps = 62/506 (12%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGA 68
           +F ++INQ   +   W     + +S DSR I    +F A   G K +   F+  A+  G 
Sbjct: 16  NFRDIINQ-EHYHYSWTGVTFDHLSYDSRDITPSTLFFAKGAGFKLE---FLESAVQAGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125
              V    Y +           P ++V + ++ +SL A   Y +HP++   +LA TGT G
Sbjct: 72  GFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFY-QHPQDKLKLLAFTGTKG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ + F   I ++S   +      +T+   +F + N LTTP  + L + ++   S G+T
Sbjct: 122 KTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSN-LTTPESLDLFRMMAEAVSNGMT 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS      R+ G+    G F N+  DHI    H T + YF  K      LL K 
Sbjct: 181 HLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLKN 235

Query: 242 SPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           S A+I        D  ++EV  + H+         + GK         + +    +   +
Sbjct: 236 SQAVIVNSGMNHFDFVAEEVADKDHD---------FYGK----DSENTVKHSSGFSFKAK 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G+F   NA+ A   C+ +G      LE ++K      VPGR E + 
Sbjct: 283 GKLAGDYDI--QLIGDFNQDNAMAAGLACLRLGAS----LEDIKKGIAQTSVPGRMEIL- 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T + G +++VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     
Sbjct: 336 TQANGAKVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYP 395

Query: 411 DI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGK 467
           +I  I++ D+P  EDP  I  EI   I   +    +R EAI+TA+ E     D LV+AGK
Sbjct: 396 EINVILSTDDPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   IV       + D ++ ++ L
Sbjct: 456 GADAFQIVNGKRTDYAGDIEVAKKYL 481


>gi|306829834|ref|ZP_07463021.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427845|gb|EFM30938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
          Length = 481

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 227/486 (46%), Gaps = 49/486 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F E+INQ S +   + +   + +S DSR ++   +F   V        F+  AI+QG + 
Sbjct: 17  FREIINQGSYY-YNYSDVDFDSISYDSRKVKERSLF--FVKGASFKKEFLLSAISQGLDW 73

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
            +       QD+   I    P ++V++ +K +SL A   YG   E   ILA TGT GK++
Sbjct: 74  YIAE-----QDYEVGI----PAIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124

Query: 129 VASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
            A F   I  +    +      +T+   +F + + LTTP  I L   ++     G TH+ 
Sbjct: 125 AAYFAYNILAQHHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMAQAVHNGRTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS      R+ G+    G F N+  DHI    H + + YF  K      LL + S A
Sbjct: 184 MEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RLLMENSRA 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFD 301
           ++   D     V+K              +  F   +    I N +    S  GK   D+D
Sbjct: 239 VVINSDMDHFSVLKEQVE--------DQEHDFYGNQSSNQIENSKAFGFSATGKLAGDYD 290

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRI 358
               L G F   NA+ A   C+ +G      LE ++K      VPGR E V T   G ++
Sbjct: 291 I--QLIGHFNQENAVAAGLACLRLGAS----LEDIQKGIAATRVPGRME-VLTQKNGAKV 343

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTD 417
           ++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I + +T 
Sbjct: 344 FIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTA 403

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIV 475
           D+P  EDP  I  EI   I   +EK  +R +AI+ A+ + +++ D +++AGKG +   IV
Sbjct: 404 DDPNYEDPMAIAEEISSYISHPVEKIADREQAIQAAMAITDQELDAVIIAGKGADRYQIV 463

Query: 476 TNGEKK 481
            NG K+
Sbjct: 464 -NGVKE 468


>gi|111018278|ref|YP_701250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817808|gb|ABG93092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 502

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 151/317 (47%), Gaps = 23/317 (7%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L + L+  +   +  V++E SSHGL  HR+DG     G FTNL RDH+D+H    AYF
Sbjct: 171 VELQQTLAAFAEHRIGAVAMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYF 230

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVC 283
            AK RLFE    + + A +  DD + + +      A   V  V +  +      H   V 
Sbjct: 231 AAKARLFEP--GRCAAAAVGVDDEFGRRLA-----ATVTVPRVTFSSRTTAADFHASAVH 283

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           A       T+   G        L G  QV NAL A       G+D    +  +E    VP
Sbjct: 284 ADEGGTSFTLHGAGARKPVRLRLLGVHQVDNALAAIAAIAVRGVDLDSAVAGIESPDTVP 343

Query: 344 GRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           GR E V      G+    +VDY H       +   +R++T GR+I V G  G+RD GKR 
Sbjct: 344 GRLEAVDA----GQPFLAFVDYMHNPAGQRRLFPYLRSLTRGRVIAVVGATGERDPGKRV 399

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEM 455
            +G  A   AD  IVTD++P S+D +++R ++  G     +       +R EAI  A+ +
Sbjct: 400 PLGATAARFADTVIVTDESPCSDDAQRLREDVARGARSGGDAEVLVVPDRAEAIVAAVTL 459

Query: 456 LNKQDVLVVAGKGHETV 472
               DV+VVAG+GH+ V
Sbjct: 460 AAPGDVVVVAGRGHDRV 476


>gi|225861361|ref|YP_002742870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230737|ref|ZP_06964418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254942|ref|ZP_06978528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503266|ref|YP_003725206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727392|gb|ACO23243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238861|gb|ADI69992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327389716|gb|EGE88061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 481

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 147/511 (28%), Positives = 232/511 (45%), Gaps = 60/511 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TGT GK++ A F   I  QR      S +++   G T   SSF      +TP  I L   
Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSF------STPENIDLFDM 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           ++     G +H+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K 
Sbjct: 171 MAQAVKNGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                LL + S A+I   D     V+K             Y  +F +      I N +  
Sbjct: 230 ----RLLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAF 277

Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345
           + S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR
Sbjct: 278 SFSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +
Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLL 390

Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462
                +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +
Sbjct: 391 LNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAV 450

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKG +   I+   ++    D  +    L
Sbjct: 451 IIAGKGADCYQIIQGKKESYPGDTAVAENYL 481


>gi|307127738|ref|YP_003879769.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
 gi|306484800|gb|ADM91669.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
          Length = 481

 Score =  146 bits (369), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 147/511 (28%), Positives = 232/511 (45%), Gaps = 60/511 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TGT GK++ A F   I  QR      S +++   G T   SSF      +TP  I L   
Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSF------STPENIDLFDM 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           ++     G +H+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K 
Sbjct: 171 MAQAVKNGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                LL + S A+I   D     V+K             Y  +F +      I N +  
Sbjct: 230 ----RLLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAF 277

Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345
           + S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR
Sbjct: 278 SFSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +
Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLL 390

Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462
                +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +
Sbjct: 391 LNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAV 450

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKG +   I+   ++    D  +    L
Sbjct: 451 IIAGKGADCYQIIQGKKESYPGDTAVAENYL 481


>gi|210135661|ref|YP_002302100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori P12]
 gi|210133629|gb|ACJ08620.1| UDP-murnac-tripeptide synthetase [Helicobacter pylori P12]
          Length = 447

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 51/382 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L      G  +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y +AK 
Sbjct: 126 SDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F +     +   E+ A+    + ++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFRDDGLKVINRDETNALFNPINVHTYALDKKAHLNVQAFSLTPFISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336
           +LK++  +H+                 PL G + +YN L    G+ +   +    ++  L
Sbjct: 246 NLKEIALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLL 288

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGDRD+
Sbjct: 289 ENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452
            KRP MG++A   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI  A
Sbjct: 343 TKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVIIEK-DRKKAILNA 401

Query: 453 IEMLNKQDVLVVAGKGHETVHI 474
           +E L   +VL++ GKG E++ I
Sbjct: 402 LENLKDDEVLLILGKGDESIQI 423


>gi|317010132|gb|ADU80712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori India7]
          Length = 447

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 188/382 (49%), Gaps = 51/382 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R  G+       TN+  DH+D+HQ  + Y +AK 
Sbjct: 126 GDLEEAVRLKCEYFIMEVSSHAIVQKRTAGLDFALKILTNITSDHLDFHQNIENYRDAKN 185

Query: 232 RLFEE----LLPKESPAIIYAD-DAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++    ++ ++   +++   +A++  + K+AH N     L      S+ YQ     +
Sbjct: 186 SFFKDEGLKVINRDETNVLFNPINAHTYALDKKAHLNVQAFSLNPFISASLCYQQDLRDL 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336
           +LK++  IH+                 PL G + +YN L    G+ +   +   ++   L
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEVIAPLL 288

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGDRD+
Sbjct: 289 ENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452
            KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI  A
Sbjct: 343 TKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGISNSSKVIIEK-DRKKAILNA 401

Query: 453 IEMLNKQDVLVVAGKGHETVHI 474
           +E L   +VL++ GKG E + I
Sbjct: 402 LENLKDDEVLLILGKGDENIQI 423


>gi|207092786|ref|ZP_03240573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 447

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 199/402 (49%), Gaps = 58/402 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L      G  +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHKSIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L  AG+ + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
             A+E L   +VL++ GKG E   I  +     S D +++R+
Sbjct: 399 LNALENLKDDEVLLILGKGDENTQIFKDKTIFFS-DQEVVRD 439


>gi|322390040|ref|ZP_08063576.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321143247|gb|EFX38689.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 481

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 225/482 (46%), Gaps = 53/482 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR + A  +F     N +  +L   QAI+ G    V     S +D+   I   
Sbjct: 35  FDAISYDSRKVSASTLFFVKGANFKKEYL--EQAISNGLGFYV-----SEKDYEVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P ++V++ ++ +SL A   YG HPE    +LA TGT GK++ A F   I ++S   +  
Sbjct: 85  -PAILVNDIKQAMSLIAMEFYG-HPEKQLKLLAFTGTKGKTTAAYFAYHILEQSHRPAML 142

Query: 147 IGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L   ++   +   TH+ +E SS      R+ G+  
Sbjct: 143 STMNTTLDGKNFFK-STLTTPESLDLFSMMAEAVANDRTHLIMEVSSQAYLVKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEVM 257
             G F N+  DHI    H T + YF  K      LL K S A++   D       + +V 
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMKNSQAVVINSDMDHFQVLADQVA 256

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYN 314
            + H+             F   +    I   +  + S  GK   ++D    L G F   N
Sbjct: 257 NQDHD-------------FYGSQSENQIETSKAFSFSATGKLAGNYDI--QLIGHFNQEN 301

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A   C+ +G     + + + K  V PGR E V T   G ++++DYAH  +SL+ +L 
Sbjct: 302 AVAAGLACLRLGASLEDIQKGIAKTRV-PGRME-VLTQKNGAKVFIDYAHNGDSLKKLLS 359

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEII 433
            + T  +G I +V G  G++ + +R   G +  D  +I + +T D+P  EDP  I  EI 
Sbjct: 360 VVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYEDPLAIAEEIS 419

Query: 434 HGIPGFIEK-GNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
             I   +EK  +R +AI+ A+ M +K +D +++AGKG +   IV   +++   D  I   
Sbjct: 420 SYITRPVEKIADREQAIQVAMAMTSKPEDAVIIAGKGADCYQIVNGVKEEYPGDAAIAER 479

Query: 492 IL 493
            L
Sbjct: 480 YL 481


>gi|257483452|ref|ZP_05637493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 295

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 144/270 (53%), Gaps = 16/270 (5%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL RDH+DYH T +AY  AK +LF          +I  DDA+ +E+      +     
Sbjct: 4   LTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAFGRELAGIKQESRLITY 61

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S      +++ +      +  + T ++ +G+ F     L G F + N L A G  +  G+
Sbjct: 62  SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNLSNVLSAVGALL--GL 118

Query: 328 DSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           D AL  +L+ L KL    GR + +G   +   + VDYAHT ++LE +L+ +R    GR++
Sbjct: 119 DYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPHAKGRLL 177

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FI 440
            +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I  G        FI
Sbjct: 178 CLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDIRPGFTAVDKVRFI 237

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           E   R +AI   I   +  DV+V+AGKGHE
Sbjct: 238 E--GRGQAIAELIASASADDVVVLAGKGHE 265


>gi|322373943|ref|ZP_08048478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
 gi|321277315|gb|EFX54385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
          Length = 481

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 238/507 (46%), Gaps = 62/507 (12%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQG 67
           ++F ++I+Q   +   W       +S DSR +    +F A   G K +   F+  A+  G
Sbjct: 15  RNFRDIIDQDHYY-YSWTGVTFEHLSYDSRDVTPSSLFFAKGAGFKRE---FLENAVKTG 70

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124
                +S   S +D+   I    P ++V + ++ +SL A   Y ++P++   +LA TGT 
Sbjct: 71  -----LSFYVSEKDYQVGI----PAIIVSDIKQAMSLVAQAFY-QYPQDKLKLLAFTGTK 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           GK++ A F   I ++S   +      +T+   +F + + LTTP  + L + +S     G+
Sbjct: 121 GKTTAAYFAYNILKQSHKPAMLSTMNTTLDGKTFFK-STLTTPESLDLFRMMSEAVDNGM 179

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPK 240
           TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K      LL +
Sbjct: 180 THLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLE 234

Query: 241 ESPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            S A+I        D  ++EV  + H+         + GK         + +    +   
Sbjct: 235 NSQAVIVNSGMDHFDFVAEEVADKDHD---------FYGK----DSENTVQHSSGFSFKA 281

Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFV 349
           +GK   D+D    L G+F   NA+ A   C+ +G      LE ++K      VPGR E +
Sbjct: 282 KGKLAGDYDI--QLIGDFNQDNAMAAGLACLRLGAS----LEDIKKGIAQTSVPGRMEIL 335

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T + G +++VDYAH  +SL+ +L+ +     GRI ++ G  G++ + +R   G +    
Sbjct: 336 -TQANGAKVFVDYAHNGDSLDKLLQVVTDHQKGRIALILGAPGNKGESRRKDFGHVLNTY 394

Query: 410 ADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAG 466
            ++  I++ D+P  EDP  I  EI   I   +    +R EAI+TA+ E    +D LV+AG
Sbjct: 395 PEVDVILSADDPNKEDPLTICQEIASHINREVRIIVDREEAIKTAMSETTGSKDALVIAG 454

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +   IV       + D ++ ++ L
Sbjct: 455 KGADAFQIVNGKHTDYAGDIEVAKKYL 481


>gi|308185264|ref|YP_003929397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Helicobacter pylori SJM180]
 gi|308061184|gb|ADO03080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Helicobacter pylori SJM180]
          Length = 447

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 186/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L      G  +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y + K 
Sbjct: 126 GDLEEAIRLGCEYFIMEVSSHAIIQKRIAGLDFALKILTNITSDHLDFHQNIENYRDTKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    + ++  + KRAH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINTHTYALDKRAHLNVQAFSLNPSISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINDSSKVIIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E + I
Sbjct: 399 LNALENLKDDEVLLILGKGDENIQI 423


>gi|296876033|ref|ZP_06900089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432944|gb|EFH18735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 481

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 138/483 (28%), Positives = 225/483 (46%), Gaps = 53/483 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + +S DSR + A  +F     N +  +L   QAI+ G    V     S +D+   I  
Sbjct: 34  RFDAISYDSRKVSASTLFFVKGANFKKEYL--EQAISNGLGFYV-----SEKDYEVGI-- 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P ++V++ ++ +SL A   YG HPE    +LA TGT GK++ A F   I ++S   + 
Sbjct: 85  --PAILVNDIKQAMSLIAMEFYG-HPEKQLKLLAFTGTKGKTTAAYFAYHILEQSHRPAM 141

Query: 146 QIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                +T+   +F + + LTTP  + L   ++   +   TH+ +E SS      R+ G+ 
Sbjct: 142 LSTMNTTLDGKNFFK-STLTTPESLDLFAMMAQAVANDRTHLIMEVSSQAYLVKRVYGLT 200

Query: 204 LIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEV 256
              G F N+  DHI    H T + YF  K      LL K S A++   D       + +V
Sbjct: 201 FDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMKNSQAVVINSDMDHFQVLADQV 255

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVY 313
             + H+             F   +    I   +  + S  GK   D+D    L G F   
Sbjct: 256 ANQDHD-------------FYGSQSENQIETSKAFSFSATGKLAGDYDI--QLIGHFNQE 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A   C+ +G     + + + K  V PGR E V T   G ++++DYAH  +SL+ +L
Sbjct: 301 NAVAAGLACLRLGASLEDIQKGIAKTRV-PGRME-VLTQKNGAKVFIDYAHNGDSLKKLL 358

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEI 432
             + T  +G I +V G  G++ + +R   G +  D  +I + +T D+P  EDP  I  EI
Sbjct: 359 SVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYEDPLAIAEEI 418

Query: 433 IHGIPGFIEK-GNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
              I   +EK  +R +AI+ A+   +K +D +++AGKG +   IV   +++   D  I  
Sbjct: 419 SSFITRPVEKISDREQAIQLAMATTSKPEDAVIIAGKGADCYQIVNGVKEEYPGDATIAE 478

Query: 491 EIL 493
             L
Sbjct: 479 RYL 481


>gi|288940178|ref|YP_003442418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum
           DSM 180]
 gi|288895550|gb|ADC61386.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum
           DSM 180]
          Length = 487

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/391 (30%), Positives = 178/391 (45%), Gaps = 56/391 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYL 170
             + VTGT+GK++   +++ I    G     IG   T+  F    R      T+P  I L
Sbjct: 115 RFIGVTGTNGKTTTVKYLESILAAHGRRVLSIG---TLGVFLDGVRQVETGFTSPPLIEL 171

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L     Q    V +EASSH LDQ R+ GI      +TN  +DH+DYH+ + +YF AK
Sbjct: 172 RRLLHAHQDQADV-VVMEASSHALDQGRVAGIPFQDAGWTNFTQDHLDYHRDEASYFAAK 230

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCA 284
             L + + P      +Y     S+ V  R    G   + V          + I  K   A
Sbjct: 231 AHLLDLIRPG---GRLYC---TSRAVADRLAALGPTPVPVEVLEPARLPPEAIAAKPFLA 284

Query: 285 I-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           + HN+    ++V                     +A  +  A+  D     +H   L  V 
Sbjct: 285 LAHNRANYALAVA--------------------LAERVLDAMPTDE--TRQHWRHLQPVD 322

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIM 402
           GRF+     +R   I +D+AHT ++L+ IL  IR      R++ +FGCGGDRD+ KRP+M
Sbjct: 323 GRFDCRVHGNRA--IVIDFAHTPDALDTILGAIREGFPDARVVTLFGCGGDRDRSKRPLM 380

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEML--- 456
           G      +D  IVT DNPR E PE+I  +I+ G P   +     +R EAI    + L   
Sbjct: 381 GAAVARHSDAIIVTSDNPRHEPPERIIDDILTGFPEDQDYSVVVDRAEAIARLFDQLAAR 440

Query: 457 --NKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             ++  V ++AGKGHE  +I  +G K    D
Sbjct: 441 PDDEPWVALIAGKGHER-YIDRDGHKTPYSD 470


>gi|224373699|ref|YP_002608071.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nautilia profundicola AmH]
 gi|223588723|gb|ACM92459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nautilia profundicola AmH]
          Length = 410

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 180/366 (49%), Gaps = 56/366 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIY--L 170
           + +TGT+GK++ A  +  + Q++G S   +G   T   +    +     LTTP PI+  +
Sbjct: 58  IGITGTNGKTTTAFVLGHLLQQAGYS---VGIQGTEGFYLNGEKIEAKTLTTP-PIFTTI 113

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A+ Y     +    +E SSH + Q R++GI+  A   T+  +DH+DYH+T + Y   K
Sbjct: 114 KRAVKYEPDFYI----MEVSSHAIVQQRIEGIEFTAKILTSFSQDHLDYHKTMEEYKRVK 169

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              F +   K           ++ +++    N  C+V S GY+             N   
Sbjct: 170 ESFFRDETVK----------VFNGKLL--VKNEKCKVKSGGYE------------FNLNC 205

Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             + V  K      P+ GEF   N   AL  A L      +S+L   +      VPGR E
Sbjct: 206 KNLYVLEKPIVDDIPMAGEFNKMNFSLALKTASLLT----NSSLSTFNFSLFEGVPGRME 261

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V   S+   + +D+AHT + +E +L  +     G+ IVVFG GGDRD+ KR +MG++A 
Sbjct: 262 IV---SKKPLVIIDFAHTPDGMEKVLSAVE----GKKIVVFGAGGDRDKDKRHLMGEVAD 314

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQD-VLVV 464
             A+  I+T+DNPR ED  +I  EI  GI     K   NR +AI+ A+++  K++  L++
Sbjct: 315 KYAEYIIITEDNPRCEDSNEICKEIAKGIKSIPYKIISNRKDAIKEAVDIAKKKNYTLML 374

Query: 465 AGKGHE 470
            GKG E
Sbjct: 375 LGKGDE 380


>gi|317181177|dbj|BAJ58963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F32]
          Length = 447

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 187/382 (48%), Gaps = 51/382 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L      G  +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 GDLEEAMRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336
           +LK++  IH+                 PL G + +YN L    G+ +   +    ++  L
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLL 288

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGDRD+
Sbjct: 289 ENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452
            KRP MG +A   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI  A
Sbjct: 343 TKRPKMGAMASCYAHQIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAILNA 401

Query: 453 IEMLNKQDVLVVAGKGHETVHI 474
           +E L   +VL++ GKG E   I
Sbjct: 402 LENLKDDEVLLILGKGDENTQI 423


>gi|228476612|ref|ZP_04061294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
 gi|228251807|gb|EEK10872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
          Length = 481

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 240/502 (47%), Gaps = 54/502 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F ++I+Q + +   W E   + +S DSR +    +F A       G  F P+ +    +
Sbjct: 16  NFRDIIDQDNYY-YSWTEVTFDHLSYDSRDVTPSSLFFA------KGAAFKPEFLENAVK 68

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126
           A  +S   + +D+   I    P ++V + ++ +SL A   Y ++P++   +LA TGT GK
Sbjct: 69  A-GLSFYVAEKDYQVGI----PAIIVSDIKQAMSLVAQAFY-QYPQDKLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ A F   I +++   +      +T+   +F + + LTTP  + L + ++   + G+TH
Sbjct: 123 TTAAYFAFNILKQNHKPAMLSTMNTTLDGKNFFK-SILTTPESLDLFRMMAEAVANGMTH 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H T + YF  K      LL + S
Sbjct: 182 LIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLENS 236

Query: 243 PAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +I        D  ++EV  + H+         + GK        A+ +    +    G
Sbjct: 237 RVVIVNSGMDHFDFIAEEVADKEHD---------FYGK----NSDNAVKHGSGFSFKASG 283

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           K   D+D    L G+F   NA+ A   C+ +G +   + E + +  V PGR E V T + 
Sbjct: 284 KLAGDYDI--QLIGDFNQDNAMAAGLACLRLGANLQDIKEGIAQTSV-PGRME-VLTQTN 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + +VDYAH  +SL+ +L+ + +   G I ++ G  G++ + +R   G +     D+ I
Sbjct: 340 GAKTFVDYAHNGDSLDKLLQVVTSHQDGHISLILGAPGNKGESRRKDFGHVLNTYPDVDI 399

Query: 415 V-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHET 471
           + T D+P  EDP  I  EI   I   +    +R +AI+TA+ E ++ +D +V+AGKG + 
Sbjct: 400 ILTADDPNKEDPLAICQEIASHISREVRIIVDREKAIKTAMSETIDSKDAVVIAGKGADA 459

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             IV       + D ++ ++ L
Sbjct: 460 FQIVNGKRDNYAGDIEVAKKYL 481


>gi|217031839|ref|ZP_03437342.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128]
 gi|298735536|ref|YP_003728057.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Helicobacter pylori B8]
 gi|216946491|gb|EEC25093.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128]
 gi|298354721|emb|CBI65593.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Helicobacter pylori B8]
          Length = 447

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 189/385 (49%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L      G  +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHESIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  +H+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALMHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLETIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG +A   A   ++T DNPRSE+ E I  +I+ GI       +EK +R +AI
Sbjct: 340 RDKTKRPEMGAVASYYAHKIVLTSDNPRSENEEDIIKDILKGISNSSKVVVEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
            +A+E L   +VL++ GKG E   I
Sbjct: 399 LSALENLKDDEVLLILGKGDENTQI 423


>gi|308183597|ref|YP_003927724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori PeCan4]
 gi|308065782|gb|ADO07674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori PeCan4]
          Length = 447

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 190/385 (49%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L  AG+ + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLALEEIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 SLLENFYGVKGRLEIVHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGAIASCYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E + I
Sbjct: 399 LNALENLKDDEVLLILGKGDENIQI 423


>gi|322387431|ref|ZP_08061041.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
 gi|321141960|gb|EFX37455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
          Length = 481

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 228/494 (46%), Gaps = 51/494 (10%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +  DSR  +   +F   V        F+  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNFNDVTFDSICYDSRKAKDNSLF--FVKGAAFKKEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI  G    V       QD+   I    P++VV++ +K +SL A   YG   E +  LA 
Sbjct: 66  AIEHGLSWYVAE-----QDYEVDI----PVIVVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILNQKHYPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMAQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
             G TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K      
Sbjct: 176 DNGRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL K S A++   D     V+K              +  F   +    I N +  + S  
Sbjct: 231 LLMKNSRAVVINSDMDYFSVLKEQVE--------NQEHDFYGSQSDNQIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLVGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIATTRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLDQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R +AI+ A+ + +++ D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSFIHHPVEKIADREQAIKAAMSVTSQELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKK 481
           G +   I+ NG K+
Sbjct: 456 GADCYQII-NGIKE 468


>gi|225871120|ref|YP_002747067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225700524|emb|CAW94989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 481

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 234/506 (46%), Gaps = 62/506 (12%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGA 68
           +F E+++Q   +   +   + + +S DSR      +F A     K D   F+ QAIA+G 
Sbjct: 16  NFREVLDQ-DGYHFNYSGLQFDSLSYDSRQADEQTLFFAKGSAFKAD---FLRQAIAKGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125
              V    Y +           P+++V+N +  +SL A   Y  +P+N   +LA TGT G
Sbjct: 72  RLYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFY-DYPQNKLKLLAFTGTKG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ A F   + + S   +      +T+    F + ++LTTP  + L   ++   + G+T
Sbjct: 122 KTTAAYFAYHMLKESHKPALLSTMNTTLDGQHFFK-SQLTTPESLDLFAMMAQCVANGMT 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      LL + 
Sbjct: 181 HLVMEVSSQAYLVGRIYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RLLMEN 235

Query: 242 SPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISV 295
           S A++        +  +++V  + H+               + K  C  +  +Q  +   
Sbjct: 236 SRAVVVNSGMEHFNILAEQVADKPHD--------------FYGKGACNRLLQRQAFSFQA 281

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GK   D+   L G F   NA+ A   C+ +G     + + + K +V PGR E V T + 
Sbjct: 282 AGKVAGDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRQGIAKTNV-PGRME-VLTMTN 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +++VDYAH  +SLE +L  +     G+I ++ G  G++ + +R   G++     ++ I
Sbjct: 340 QAKVFVDYAHNGDSLEKLLSVVEEYQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRI 399

Query: 415 V-TDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEML-NKQDVLVVAGK 467
           + T D+P  EDP+ I  E    I  +I +      +R EAI+T +E   N+QD L++AGK
Sbjct: 400 ILTADDPNFEDPQLISEE----IASYIHREVDIIIDRKEAIKTGMERCQNEQDALIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   IV   +   + D  I +  L
Sbjct: 456 GADAYQIVKGQKTAYAGDLAIAKSYL 481


>gi|167614194|gb|ABZ89698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 362

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 163/331 (49%), Gaps = 15/331 (4%)

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            D + TTP  IY+   L     +    V++E SSHGL Q+R+  I    G  TN+ +DH+
Sbjct: 19  HDTKNTTPEAIYIQSFLYMAVEKKTKLVTMEVSSHGLVQNRVKEIPFHIGILTNISQDHL 78

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------ 271
           D+H   + Y +AK   F +   K    I+ A+D   +  ++R  N     +++       
Sbjct: 79  DFHGNMENYKSAKWSFFSK--HKIKKVILNANDKCGQIWLRRLFNVYTIAVTIKDSTQKK 136

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           Y  K+I+   +    N   +T        +    L G+F   N L++    + +G     
Sbjct: 137 YATKWINATHLQYDKNGTNITFESSWGSGNIKSYLIGDFNAINLLLSLACLLELGYKIYD 196

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
           ++    K+  + GR E V  N++   I +DYAHT ++L+  L +IR       I  +FGC
Sbjct: 197 LINTSYKIQPINGRMETVFHNNKLVFI-IDYAHTPDALKKALNSIRLHYNQSYIWCIFGC 255

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRI 446
           GG+RD+ KRP+MG IA  +A+  I+T+DNPR+E  E I  +I++G       FI   NR 
Sbjct: 256 GGNRDKKKRPLMGSIAEKIANKVIITNDNPRNEKEENIINDILNGCKNPKKIFIIP-NRK 314

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +AI  A        ++ +AGKGHE   I+ N
Sbjct: 315 QAISYAFHQSQDDHIIFLAGKGHEDKQIIQN 345


>gi|313891284|ref|ZP_07824902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120351|gb|EFR43472.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 479

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 132/483 (27%), Positives = 231/483 (47%), Gaps = 39/483 (8%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+F E+I   S +   +      ++S DSR +    +F     N +  +L    A+ QG 
Sbjct: 15  KNFREVIADDSYY-YHYTGLNFAKLSYDSRDVDDQTLFFVKGANFKAEYL--QSALEQGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A +    Y +         + P ++V++ +  +S+ A   Y    +N+  LA TGT GK
Sbjct: 72  PAYISEVDYEV---------DIPAIIVNDIKHAMSIIAMAFYDNPQDNLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ A F   I ++S  ++      +T+   +F + ++LTTP  + L K ++   S G+TH
Sbjct: 123 TTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFK-SQLTTPESLDLFKMMAECVSNGMTH 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H T + YF  K  L E       
Sbjct: 182 LIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLME----NSR 237

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
             II +D  Y K + ++  N          +  F        I + Q  T  V GK    
Sbjct: 238 AVIINSDMDYFKILKEQVKNQ---------EHDFYGQASDNHILDSQAFTFKVTGKLAGS 288

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G F   NAL A   C+ +G  S  + + + +   VPGR E V ++  G +++VD
Sbjct: 289 YKTLLIGRFNQDNALAAGLACLRLGASSDDIRKGIAET-TVPGRME-VLSHPCGAKVFVD 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNP 420
           YAH  +SLE ++  +     G+II++ G  G++ + +R    K+  +  +++++ T D+P
Sbjct: 347 YAHNGDSLEKLVSVVEEHQKGQIILIIGSTGNKGESRRADFAKVINNHPNLSVILTADDP 406

Query: 421 RSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNG 478
             EDP+ I  EI   +   +  + +R +AI+  +++  K+ D L++AGKG +   I+ NG
Sbjct: 407 NFEDPQTISEEIASYVSRQLTIEVDREQAIKLGLQLCQKEGDALIIAGKGADAYQII-NG 465

Query: 479 EKK 481
           +K+
Sbjct: 466 KKR 468


>gi|148997407|ref|ZP_01825012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575274|ref|ZP_02721237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|307068174|ref|YP_003877140.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756462|gb|EDK63503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578907|gb|EDT99435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|306409711|gb|ADM85138.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 481

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 235/510 (46%), Gaps = 58/510 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K  L E 
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME- 234

Query: 237 LLPKESPAIIYAD-DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              K    II +D D +S   ++V  + H+         Y  +F +      I N +  +
Sbjct: 235 ---KSRAVIINSDMDHFSVLKEQVEDQDHDF--------YGSQFDN-----QIENSKAFS 278

Query: 293 ISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRF 346
            S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR 
Sbjct: 279 FSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRM 332

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G + 
Sbjct: 333 E-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLL 391

Query: 407 LDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLV 463
               +I + +T D+P  EDP  I  EI + I   +EK  +R EAI+ A+ + N + D ++
Sbjct: 392 NQHPEIQVFLTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVI 451

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKG +   I+   ++    D  +    L
Sbjct: 452 IAGKGADCYQIIQGKKESYPGDTAVAENYL 481


>gi|208435362|ref|YP_002267028.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27]
 gi|208433291|gb|ACI28162.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27]
          Length = 447

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 184/382 (48%), Gaps = 51/382 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ VTGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGVTGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y +AK 
Sbjct: 126 SDLEEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A +  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLTPSISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336
           +LK+V  +H+                 PL G + +YN L    G+ +   +    ++  L
Sbjct: 246 NLKEVALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLL 288

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGDRD+
Sbjct: 289 ENFYGVKGRLEVVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452
            KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI  A
Sbjct: 343 TKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINDSSKVIIEK-DRKKAILNA 401

Query: 453 IEMLNKQDVLVVAGKGHETVHI 474
           +E L   +VL++ GKG E   I
Sbjct: 402 LENLKDDEVLLILGKGDENTQI 423


>gi|332637430|ref|ZP_08416293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Weissella
           cibaria KACC 11862]
          Length = 508

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 205/446 (45%), Gaps = 57/446 (12%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++  AIA+G +AIV  +++       T  ++ P  VVD+    +S+ +   Y  +P+N L
Sbjct: 54  YLTDAIAKGVKAIVAPTSF-------THDTDLPTWVVDDVPAAMSVLSMAFY-DYPQNKL 105

Query: 119 A---VTGTSGKSSVASFVQQICQ-----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           A   +TGT GK+S      ++ +     +  LSS     T     F     LTTP  + L
Sbjct: 106 ALIGITGTKGKTSATYMAYEMLRVATDDKVALSSTLQVITGADPKFHYRAHLTTPESLDL 165

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFN 228
            + ++   + G+TH+ +E SS      R+ G++   G F N+  DH+  + H T + Y  
Sbjct: 166 FRWMAEAVANGMTHMVMEVSSQAYKMERVYGLRFNVGVFLNISPDHVGENEHPTFEDYLE 225

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR---------------------V 267
            KM LF+         I+ AD  +  E+++ A  A  R                      
Sbjct: 226 HKMMLFDH----SEQIILNADSDHFSELIEHAELAVPRDGIWLYGREDEDSPKADVYYDT 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +    QG    +++      +Q   + + G   D+   +PG+F   NA+ A      +G 
Sbjct: 282 VEADLQGSTFAVREA----GQQAARLGIAG---DYHLDMPGDFNQGNAVAAMIATRLVGA 334

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIV 386
           D+  + E LE +  +PGR + + T +  G IYVDYAH   S+  +L  +RT  T  ++ +
Sbjct: 335 DTDAMHEGLEVVK-IPGRMQVLTTQNH-GTIYVDYAHNYASIAALLNFVRTNETVEKLTI 392

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEK 442
           V G  G++   +RP +G+   + AD+  +T D+P+ EDP  I  EI   I         +
Sbjct: 393 VVGAPGNKGVSRRPGIGQAVSEGADVVYLTSDDPQFEDPNAIADEIQAAITNDHVVINRE 452

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +R  AI  AI+     DV+V+A KG
Sbjct: 453 MDRTIAITEAIKAAGPNDVVVLAAKG 478


>gi|308064254|gb|ADO06141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Sat464]
          Length = 447

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 191/385 (49%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEELLPK-----ESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKFIH- 278
             F++   K     E+ A+    +A++  + K+AH N     L      S+ YQ    + 
Sbjct: 186 SFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLRNP 245

Query: 279 -LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
            LK++  IH+                 PL G + +YN L  AG+ + + + + L LE   
Sbjct: 246 DLKEIALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG++A   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E+  I
Sbjct: 399 LNALENLKDDEVLLILGKGDESTQI 423


>gi|225859285|ref|YP_002740795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae 70585]
 gi|225721175|gb|ACO17029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae 70585]
          Length = 481

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 230/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+ +DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISQDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQNHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   N++ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENSVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|15901375|ref|NP_345979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658373|ref|ZP_01409060.1| hypothetical protein SpneT_02000452 [Streptococcus pneumoniae
           TIGR4]
 gi|21362711|sp|Q97PS1|MURE_STRPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14973020|gb|AAK75619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 481

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 234/510 (45%), Gaps = 58/510 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K  L E 
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME- 234

Query: 237 LLPKESPAIIYAD-DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              K    II +D D +S   ++V  + H+         Y  +F +      I N +  +
Sbjct: 235 ---KSRAVIINSDMDHFSVLKEQVEDQDHDF--------YGSQFDN-----QIENSKAFS 278

Query: 293 ISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRF 346
            S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR 
Sbjct: 279 FSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRM 332

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G + 
Sbjct: 333 E-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLL 391

Query: 407 LDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLV 463
               +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D ++
Sbjct: 392 NQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVI 451

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKG +   I+   ++    D  +    L
Sbjct: 452 IAGKGADCYQIIQGKKESYPGDTAVAENYL 481


>gi|108563844|ref|YP_628160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPAG1]
 gi|107837617|gb|ABF85486.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori HPAG1]
          Length = 447

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 185/381 (48%), Gaps = 49/381 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAVRLKCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHKSIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336
           +LK++  IH+                 PL G + +YN L    G+ +   +   ++   L
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEVIAPLL 288

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGDRD+
Sbjct: 289 ENFYGVKGRLEIVHSKPL---VIVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAI 453
            KRP MG IA   A   ++T DNPRSE+ E I  +I+ GI      I + +R +AI  A+
Sbjct: 343 TKRPKMGAIASCYAHQIVLTSDNPRSENEEDIIKDILKGISDSSKVIVEKDRKKAILNAL 402

Query: 454 EMLNKQDVLVVAGKGHETVHI 474
           E L   +VL++ GKG E   I
Sbjct: 403 ENLKDDEVLLILGKGDENTQI 423


>gi|317014909|gb|ADU82345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Gambia94/24]
          Length = 447

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 187/384 (48%), Gaps = 55/384 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIAQKRIAGLDFALKILTNITSDHLDFHKSLENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A +  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK+   IH+                 PL G + +YN L  AG+ + + + + L LE   
Sbjct: 246 NLKETALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIR 450
           RD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI 
Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAIL 399

Query: 451 TAIEMLNKQDVLVVAGKGHETVHI 474
            A+E L   +VL++ GKG E   I
Sbjct: 400 NALENLKDDEVLLILGKGDENTQI 423


>gi|148984878|ref|ZP_01818131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922900|gb|EDK74016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800363|emb|CBW32994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae OXC141]
          Length = 481

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLCLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|325971615|ref|YP_004247806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
 gi|324026853|gb|ADY13612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
          Length = 493

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 209/458 (45%), Gaps = 35/458 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S  S+   A  +F A  G + DG L+I +AI  GA  I+     S  +  A ++ +
Sbjct: 24  IETISQHSKQCTANSVFFAFHGLRTDGILYIQEAIEHGAVCIISDQNLSNLNLPAKVQWH 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V       +L  S L     +   I+ V+GT GKS+   ++ QI + +G+ +   
Sbjct: 84  Q----VHKPHTAFALMCSALNDNSQDKLGIIGVSGTDGKSTTCDYLYQILEANGVKT--- 136

Query: 148 GPTSTIS----SFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRL 199
           G  +T+S    S   D+  R +TP P  L   L       V  V +E +SH L     RL
Sbjct: 137 GLLTTVSMDDGSGKVDSPFRQSTPEPDQLHVFLRRCVENKVQKVILECTSHALSDTFDRL 196

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI   A   T +  +H+++H + + Y  AK+ L   L  K+    + + D    E    
Sbjct: 197 AGIHFEAAIVTKVTSEHLEFHHSLEEYTQAKVNLVRSL--KDGGLFVTSTDNAKLEAFTA 254

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              +  + L +G   K + L+        Q V + +  +       LP      NAL+A 
Sbjct: 255 ELRSTTKALILG---KDVMLR--IEFMGYQGVVVDILDQRIQTSLLLPS--LATNALLAT 307

Query: 320 GLCIA--IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376
             C +  +GID   +L  ++ L  V GR + +  N+ G R  +D+AHT+++ + I     
Sbjct: 308 -FCASHLLGIDVTALLVLIKSLKPVKGRMQQI-ENTLGVRTIIDFAHTADAYDGIFFFAK 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI----RAEI 432
           RT   G II VFGC G+RD  KR  MGKIA       I+T+++PR E  ++I    R  +
Sbjct: 366 RTCEGGDIIAVFGCAGERDTSKRSPMGKIANKYCSTIILTEEDPRREGNQQIFSDLRFHM 425

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +      E  +R EAIR A+ +    D L+  GKGHE
Sbjct: 426 NNPACRVWEIESRREAIRKAVSIAQCGDTLLFLGKGHE 463


>gi|317011629|gb|ADU85376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori SouthAfrica7]
          Length = 447

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 184/384 (47%), Gaps = 55/384 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IIGITGTNGKTTTASLMYSLLLDLNKKAALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLECEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHKSLENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A +  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           ++K+   IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NVKETALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V        + VD+AHT++ ++ + ++ +   S +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHPKPL---VVVDFAHTTDGMQQVFESFK---SQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIR 450
           RD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI 
Sbjct: 340 RDKTKRPKMGAIASYYAHKIILTSDNPRSENEEDIIKDILKGINDLSKVITEKDRKKAIL 399

Query: 451 TAIEMLNKQDVLVVAGKGHETVHI 474
            A+E L   +VL++ GKG E + I
Sbjct: 400 NALENLKDDEVLLILGKGDENIQI 423


>gi|307638150|gb|ADN80600.1| UDP-N-acetylmuramoyl alanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 908]
 gi|325996749|gb|ADZ52154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 2018]
 gi|325998344|gb|ADZ50552.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pylori 2017]
          Length = 447

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 187/384 (48%), Gaps = 55/384 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y +AK 
Sbjct: 126 GDLEEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKVLTNITSDHLDFHQNIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A +  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           ++K+   IH+                 PL G + +YN L  AG+ + + + + L LE   
Sbjct: 246 NVKETALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT++ ++ + +N +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFENFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIR 450
           RD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI 
Sbjct: 340 RDKTKRPKMGAIASCYAYKIILTSDNPRSENEEDIIKDILKGINDSSKVIVEKDRKKAIL 399

Query: 451 TAIEMLNKQDVLVVAGKGHETVHI 474
            A+E L   +VL++ GKG E + I
Sbjct: 400 NALENLKGDEVLLILGKGDENIQI 423


>gi|308062758|gb|ADO04646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Cuz20]
          Length = 447

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 188/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ ++    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLALEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG++A   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E+  I
Sbjct: 399 LNALENLKDDEVLLILGKGDESTQI 423


>gi|221232241|ref|YP_002511394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225854970|ref|YP_002736482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae JJA]
 gi|220674702|emb|CAR69275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225723162|gb|ACO19015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae JJA]
          Length = 481

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVKDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|58699992|ref|ZP_00374557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533489|gb|EAL57923.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 218

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 126/206 (61%), Gaps = 12/206 (5%)

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           HN Q +T+ ++ + ++  FP+ G+FQ YN L A G+    G++   +   +EKL   PGR
Sbjct: 18  HNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGIS---GLNYREIC--VEKLVSPPGR 72

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V   +     +VDYAHT ++L+  L +++   + +II+VFGCGG+RDQ KR  MGKI
Sbjct: 73  MEKVKPFA-----FVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKI 127

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV 464
           A   AD  I+TDDN R EDP KIR +I+   P  +E G R EAI   +++  N+  +L+V
Sbjct: 128 AQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGMILLV 187

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIR 490
           AGKG+E   I+ N   + S D ++I+
Sbjct: 188 AGKGNEKFQIIGNQTFEFS-DVEVIK 212


>gi|149011768|ref|ZP_01832964.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684487|ref|YP_001836234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303255316|ref|ZP_07341386.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|303260157|ref|ZP_07346129.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262547|ref|ZP_07348488.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303264949|ref|ZP_07350864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|303267258|ref|ZP_07353122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|303269569|ref|ZP_07355332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|147764199|gb|EDK71131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629821|gb|ACB90769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802248|emb|CBW35000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV200]
 gi|302597684|gb|EFL64760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|302636264|gb|EFL66758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638654|gb|EFL69117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302640913|gb|EFL71297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|302643223|gb|EFL73506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|302645468|gb|EFL75700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|332073868|gb|EGI84346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 481

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
          Length = 492

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 206/458 (44%), Gaps = 31/458 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  + SDSR+++   IF  I G   DGH ++  AI QGA+ IV S     + +   +  
Sbjct: 15  KIESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHSKPLR-RYYQGIVYV 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRS----- 140
             P  V+D   +   LF       HP   +    VTGTSGK+ VA  V ++  R      
Sbjct: 74  QVPD-VLDELNRVADLFYD-----HPSYKMTGIGVTGTSGKTVVARVVARLLGRYLKMGY 127

Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +  + G T    +       TTP PI L +    +  + V   ++E SSHGL   R+
Sbjct: 128 VGNNGIEYGATMMQMTG------TTPDPICLHRNFYNMVKENVKGFTLEVSSHGLALKRV 181

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +      FTN   +H+D+H T      +  +LF  LL +   AI+ AD+      +  
Sbjct: 182 DSVNFSIVVFTNAYEEHMDFHGTIDNLMVSYEKLF-RLLQEGGYAILNADEVRFNHFLSM 240

Query: 260 AH---NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +   +   ++LS G   K  I  + +    +     I ++ + F    P+   F + N 
Sbjct: 241 NYKDLSEHAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAPFNISNT 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L       A+ +    ++  ++ +  V GR E V    +   I VDY   +++ E + K 
Sbjct: 301 LAILTTLYALEMTPEEIVNAIKYIQPVEGRMEVVPV-KQPFHIIVDYCQHAHNFEEVFKF 359

Query: 376 IRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +  +  +G +I VFG  G +D  KR  +G +A    D  I+T+ + R +D E I  +I  
Sbjct: 360 VYGVKGNGHLIAVFGAPGRKDIHKRSKIGALANKYCDYVILTEQDERDDDIEGICEQIQE 419

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I  P  +   NR  AI+ AI+     DV+++ GKGHE
Sbjct: 420 QIVDPISVIITNRRFAIQQAIDAACAGDVILILGKGHE 457


>gi|261840170|gb|ACX99935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 52]
          Length = 447

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 185/382 (48%), Gaps = 51/382 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYRDAKN 185

Query: 232 RLFEELLPK-----ESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++   K     E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPFISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336
           +LK++  IH+                 PL G + +YN L    G+ +   +    +   L
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLETIAPLL 288

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E  + V GR E + +      + VD+AHT + ++ + ++ +   + +I  +FG GGDRD+
Sbjct: 289 ENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGDRDK 342

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452
            KRP MG++A   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI  A
Sbjct: 343 TKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAILNA 401

Query: 453 IEMLNKQDVLVVAGKGHETVHI 474
           +E L   +VL++ GKG E   I
Sbjct: 402 LENLKDDEVLLILGKGDENTQI 423


>gi|222152603|ref|YP_002561778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus uberis 0140J]
 gi|222113414|emb|CAR41085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus uberis 0140J]
          Length = 482

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 142/511 (27%), Positives = 236/511 (46%), Gaps = 54/511 (10%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58
           K  +L+ KD  F E+I+Q   +   +      ++S DSR + A  +F A     K D   
Sbjct: 6   KTIELLKKDHNFREVIHQEHYY-FNYSGLSFQKLSYDSREVDADTLFFAKGAQFKVD--- 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ +AI QG +A V    Y L         + P ++V + +K +S+ A   YG   E + 
Sbjct: 62  YLKKAIDQGLQAYVSEIDYQL---------SIPAIIVSDIKKAMSIIAMTFYGNPQEKLK 112

Query: 118 -LAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            LA TGT GK++ A F   I  Q    + F    T+        ++LTTP  + L K ++
Sbjct: 113 LLAFTGTKGKTTAAYFAYHILKQNYKPAMFSTMNTTLDGQTFFKSQLTTPESLDLFKMMA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
              S G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K   
Sbjct: 173 SCVSNGMTHIIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229

Query: 234 FEELLPKESPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              LL + S A++        +  +++V  + H      +  G Q +        A+   
Sbjct: 230 --RLLMENSRAVVINSGMDHFNILAEQVADKDH------VFYGDQSE-------NALTES 274

Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           Q    SV G+    +D    L G F   NA+ A   C  +G     + E + +   VPGR
Sbjct: 275 QAFAFSVNGQIAGHYDI--QLIGRFNQENAIAAGLACQKLGASHLDIHEGIAQT-TVPGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V ++  G +++VDYAH  +SLE ++  + T   G I ++ G  G++ + +R   G++
Sbjct: 332 MEVV-SHPNGAKVFVDYAHNGDSLEKLVSVVETHQKGLISLIIGSTGNKGESRRADFGRV 390

Query: 406 ALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVL 462
             +  ++  I+T D+P  EDPE I  EI   +   +    +R +AI   ++  +   D L
Sbjct: 391 INNHPNLNVILTADDPNFEDPETICQEIASHVNRHVSIIVDRQDAIIEGLKYCHTSGDAL 450

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKG +   IV   +++ + D  I ++ L
Sbjct: 451 IIAGKGADAYQIVNGKKEEYAGDLAIAKKAL 481


>gi|317013264|gb|ADU83872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Lithuania75]
          Length = 447

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 189/385 (49%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D +     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKQIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L      G  +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y + K 
Sbjct: 126 SDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDIKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLNPFISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L  AG+ + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSQPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG IA   A   ++T DNPRSE+ E I  +I+ GI       +EK +R +AI
Sbjct: 340 RDKTKRPKMGAIASCYAHKIVLTSDNPRSENEEDIIKDILKGINNSSKVVVEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E   I
Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423


>gi|168487500|ref|ZP_02712008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569676|gb|EDT90204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 481

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLVWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|148992580|ref|ZP_01822248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|168484981|ref|ZP_02709926.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488808|ref|ZP_02713007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|147928597|gb|EDK79611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|172041891|gb|EDT49937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|183572773|gb|EDT93301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|332072323|gb|EGI82806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17570]
 gi|332200092|gb|EGJ14165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 481

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMVIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|254780004|ref|YP_003058111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori B38]
 gi|254001917|emb|CAX30170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Helicobacter pylori
           B38]
          Length = 447

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 197/401 (49%), Gaps = 56/401 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D +     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDTQIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A +  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLTPFISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  +H+                 PL G + +YN L  AG+ + + + + L LE   
Sbjct: 246 NLKEIALMHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIR 450
           RD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI 
Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGISDSSKVIVEKDRKKAIL 399

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            A+E L   +VL++ GKG E + I  +     S D +I+R+
Sbjct: 400 NALENLKDDEVLLILGKGDENIQIFKDKTIFFS-DQEIVRD 439


>gi|317179671|dbj|BAJ57459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F30]
          Length = 447

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLALETIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E + +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG++A   A   ++T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEVASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E   I
Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423


>gi|332674264|gb|AEE71081.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pylori 83]
          Length = 447

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 NDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E + +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG+IA   A   ++T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEIASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E   I
Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423


>gi|297380651|gb|ADI35538.1| UDP-N-acetylmuramyl-tripeptide synthetase [Helicobacter pylori
           v225d]
          Length = 447

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 187/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E + +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG+IA   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEIASYYAHKIILTSDNPRSENEEYIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E   I
Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423


>gi|152993861|ref|YP_001359582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
 gi|151425722|dbj|BAF73225.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
          Length = 432

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 200/446 (44%), Gaps = 60/446 (13%)

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA-----------VTGTSGKS 127
           L D +  +   T  L+    R +     S+     P+ ++A           VTGT+GK+
Sbjct: 13  LTDNTMLLDEETLFLLTSQNRPYYEKLESKPASITPDELIAFWGLDAMKVVGVTGTNGKT 72

Query: 128 SVA----SFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLS 178
           +V     SF+  + ++  L         T   FA++ R     +TTPS +     +    
Sbjct: 73  TVTAAIYSFLLDLDKKPALQG-------TRGLFAEEKRIEEKSMTTPSILETLHNMKQTM 125

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  +  +E SSH +DQ R++GI       TN+  DH+DYH T + Y   K   F +  
Sbjct: 126 DMGCNYFIMEVSSHAIDQKRIEGITFALKVHTNVTSDHLDYHGTVEEYRRVKSLFFAD-- 183

Query: 239 PKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++  ++  DD     Y+    K A++ G    +      F  L  + A        I 
Sbjct: 184 --DTMKLLNKDDINNITYNP---KNAYSYGVDEPATYKVQAFSLLHGITA-------GIK 231

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAG---LCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              ++  F  P+ G F ++N + A G   L     I    + + +E    V GR E V  
Sbjct: 232 YMQEEATFHSPMMGLFNLFNLMAAIGSVHLLTKRPIQE--ICDVVENFAGVAGRMEVV-- 287

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            SR   + VD+AHT + +  +L++++      I VVFG GG+RD+ KRP+MG  A   A+
Sbjct: 288 -SRDPLVIVDFAHTHDGIHAVLESMK---DRDISVVFGAGGNRDKEKRPLMGAAAGRYAN 343

Query: 412 IAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              VT DNPR E PE I  +I   +HG        +R  AI+ A+E L   +VL++ GKG
Sbjct: 344 KIYVTSDNPRDEVPEMILEDILVGLHGKENVTATPDRRLAIKMALEALEPNEVLLILGKG 403

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            E    +  G K    D +++RE+L 
Sbjct: 404 DEDYQEI-KGVKHHFDDREVVRELLA 428


>gi|332200971|gb|EGJ15042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 481

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 228/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    +    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +    S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFRFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|188528265|ref|YP_001910952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Shi470]
 gi|188144505|gb|ACD48922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Shi470]
          Length = 447

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 188/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D +     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKQIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ ++    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VIVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG++A   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E   I
Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423


>gi|15646103|ref|NP_208285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 26695]
 gi|8134572|sp|O26027|MURE_HELPY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2314673|gb|AAD08535.1| UDP-MurNac-tripeptide synthetase (murE) [Helicobacter pylori 26695]
          Length = 447

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 184/381 (48%), Gaps = 49/381 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  + R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINNERIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+HQ+ + Y +AK 
Sbjct: 126 SDLEEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQSIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPVNAHTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336
           + K++  +H+                 PL G + +YN L    G+ +   +    ++  L
Sbjct: 246 NFKEIALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLETIVPLL 288

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E  + V GR E V +      + VD+AHT + ++ + ++ +   + +I  +FG GGDRD+
Sbjct: 289 ENFYGVKGRLEIVHSKPL---VVVDFAHTIDGMQQVFESFK---NQKITALFGAGGDRDK 342

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAI 453
            KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+
Sbjct: 343 TKRPEMGAIASYYAHKIILTSDNPRSENEEDIIKDILKGINDSSKVIVEKDRKKAILNAL 402

Query: 454 EMLNKQDVLVVAGKGHETVHI 474
           E L   +VL++ GKG E + I
Sbjct: 403 ENLKDDEVLLILGKGDENIQI 423


>gi|168493432|ref|ZP_02717575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576477|gb|EDT97005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 481

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 228/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    +    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +    S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFRFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQAGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|148988576|ref|ZP_01820009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147925777|gb|EDK76852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
          Length = 481

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 228/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    +    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +    S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFRFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|315585881|gb|ADU40262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Helicobacter pylori 35A]
          Length = 447

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E + +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG++A   A   ++T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEVASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E   I
Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423


>gi|225867965|ref|YP_002743913.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225701241|emb|CAW98198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 481

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 135/505 (26%), Positives = 232/505 (45%), Gaps = 60/505 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGA 68
           +F E+++Q   +   +   + + +S DSR      +F A     K D   F+ QAIA+G 
Sbjct: 16  NFREVLDQ-DGYHFNYSGLQFDSLSYDSRQADEQTLFFAKGATFKAD---FLKQAIAKGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGK 126
           +  V    Y +           P+++V+N +  +SL A   Y   +H   +LA TGT GK
Sbjct: 72  KIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ A F   + + S   +      +T+   SF + ++LTTP  + L   ++   + G+TH
Sbjct: 123 TTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFK-SQLTTPESLDLFAMMAQCVANGMTH 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H + + YF  K      LL + S
Sbjct: 182 LVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RLLMENS 236

Query: 243 PAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVE 296
            A++        +  +++V  + H+               + K  C  +  +Q  +    
Sbjct: 237 RAVVVNSGMEHFNILAEQVADKPHD--------------FYGKGACNRLLQRQAFSFQAA 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + + K  V PGR E V T +  
Sbjct: 283 GKLAGDYAIQLIGSFNQENAMAAGLACLRLGASLKDIRQGIAKTRV-PGRME-VLTMTNQ 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ VDYAH  +SLE +L  +     G+I ++ G  G++ + +R   G++     ++ I+
Sbjct: 341 AKVVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVHII 400

Query: 416 -TDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEML-NKQDVLVVAGKG 468
            T D+P  EDP+ I  E    I  +I +      +R EAI+T +E   +K+D L++AGKG
Sbjct: 401 LTADDPNFEDPQLISEE----IASYIHREVDIIIDRKEAIKTGMERCQSKEDALIIAGKG 456

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
            +   IV   +   + D  I +  L
Sbjct: 457 ADAYQIVKGQKAAYAGDLAIAKSYL 481


>gi|15612452|ref|NP_224105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori J99]
 gi|8134585|sp|Q9ZJC6|MURE_HELPJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4156007|gb|AAD06968.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
          Length = 447

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 186/384 (48%), Gaps = 55/384 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D       LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFIDDKHIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y +AK 
Sbjct: 126 SDLEEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A +  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHDLRDP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK+   IH+                 PL G + +YN L  AG+ + + + + L LE   
Sbjct: 246 NLKETALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E V +      + VD+AHT++ ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIR 450
           RD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI 
Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAIL 399

Query: 451 TAIEMLNKQDVLVVAGKGHETVHI 474
            A+E L   +VL++ GKG E + I
Sbjct: 400 NALENLKDDEVLLILGKGDENIQI 423


>gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
 gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
          Length = 510

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 212/465 (45%), Gaps = 36/465 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR +  G +FVAI G   DGH FIPQAIA GA A+VV   Y    +   + + 
Sbjct: 25  ISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAIAAGAAAVVVDQRY----WHGAVSAE 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV ++R  L+  A+  Y ++P   L   G +G    ++      Q    +   +G 
Sbjct: 81  VPVVVVADSRVALAPLAAAFY-EYPGQQLTTIGITGTKGKSTTTDLTAQLLAAAGRTVGM 139

Query: 150 TSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDG 201
            ST+        +  D R +TP    +   L  +   G     +EA+SH L     RL G
Sbjct: 140 ISTVDFQIGTRRWPNDTRQSTPEAPEVQALLREMVVAGCDTAVIEATSHALSPRWGRLVG 199

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259
                    N+G +H+D+H T + Y   K +LF  L  +  P  AI+ ADD +    +  
Sbjct: 200 CAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAERHGPTWAIVNADDPHHGTFLAA 259

Query: 260 AHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +   R+          QG+ +H     +      + I     + +   PLPG F   N
Sbjct: 260 VPSQTMRLRYALHAPADVQGQIVHSGPASS-----HMRIHSPWGEIEVNVPLPGRFNASN 314

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A  + +  G+        +  +    GR   +    +   + VDYAH  +S E I  
Sbjct: 315 VLAALTVALTQGVPLERAAAAVAHVRAPRGRMVSINVG-QPFTVIVDYAHNPDSFEQIFT 373

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI------ 428
            +R   +GRII VFG  G+RD  KR I G+IA  + D+ ++TD++PR ED E I      
Sbjct: 374 MLRPQVTGRIIAVFGSAGERDVSKRAIQGEIAGRMCDLLVLTDEDPRGEDREAIIAQIAA 433

Query: 429 ---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
              RA    G  G++   NR +AIRTAI      D++++ GKGHE
Sbjct: 434 GAERAGKRPG-SGYLCIPNRAQAIRTAIAAARPGDMVLLLGKGHE 477


>gi|237751045|ref|ZP_04581525.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
 gi|229373490|gb|EEO23881.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
          Length = 451

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 187/419 (44%), Gaps = 65/419 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           ++ +TGT+GK++ A+ +  +    G   +++    T   F  D R     LTTPS + L 
Sbjct: 53  LIGITGTNGKTTTAAAIYSVLLDMG---YKVALLGTRGMFINDTRKKPKGLTTPSLLELY 109

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + +   ++ G     +E SSH + Q R+ G++      TN+  DH+DYH+T + Y   KM
Sbjct: 110 EDIDMAANMGCDFFVMEVSSHAIKQERIYGLEFCLKILTNITSDHLDYHKTWEDYAKTKM 169

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---------QGKFIHLKKV 282
           +  +     E   II  DD     +    H     V S G+          G F  +   
Sbjct: 170 QFLQ---SGECIKIINLDDKSGASMRFYPHVLTYGVESKGHLFVNAYGLQDGIFAQMSLR 226

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI--AIGIDSALVLEHLEKLH 340
               + Q+  I            L G F +YN L+AA L I      D   +   ++   
Sbjct: 227 LQKDSMQECVIES---------SLFGLFNLYN-LMAATLAIHAITKQDIQSICACVKNFG 276

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR E V   S+   + +D+AHT++ ++ + ++ +T     I VVFG GGDRD+ KR 
Sbjct: 277 GVSGRMEIV---SKTPLVIIDFAHTTDGMKQVFESFKT---KNISVVFGAGGDRDKSKRE 330

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----------------IEKGN 444
            MG  A   A    +T+DNPRSE+P  I  EI  G+                   I+  N
Sbjct: 331 KMGACARFYAKKIYITNDNPRSENPLSIAQEIAKGVFAKSLNETDIEIKENTSYEIKSSN 390

Query: 445 ----------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     R EAI+ A+  L K  VL+V GKG E+V I  + E   S D + ++EIL
Sbjct: 391 AAITMQIILDRKEAIKLALRELQKDWVLLVLGKGDESVQIFRDNEIHFS-DKECVQEIL 448


>gi|58700141|ref|ZP_00374655.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533343|gb|EAL57828.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 213

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 130/218 (59%), Gaps = 12/218 (5%)

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           G  I L +  +  N Q +T+ ++ + ++  FP+ G+FQ YN L A G+    G++   + 
Sbjct: 1   GSDITLLEQTSTPNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGIS---GLNYREIC 57

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             +EKL   PGR E V   +     +VDYAHT ++L+  L +++   + +II+VFGCGG+
Sbjct: 58  --VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHINKKIILVFGCGGN 110

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           RDQ KR  MGKIA   AD  I+TDDN R EDP KIR +I+   P  +E G R EAI   +
Sbjct: 111 RDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGV 170

Query: 454 EM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           ++  N+  +L+VAGKG+E   I+ N   + S D ++I+
Sbjct: 171 DIAYNEGMILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 207


>gi|241896418|ref|ZP_04783714.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
 gi|241870398|gb|EER74149.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
          Length = 518

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 198/454 (43%), Gaps = 73/454 (16%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++  AI +G  AI+  +++          +  P  V D+    +S+ A   Y ++P+N L
Sbjct: 64  YLTDAIEKGVTAIIAPASFKHA-------TKLPTWVADDVPAAMSIIAMAFY-QYPQNNL 115

Query: 119 A---VTGTSGKSSVASFVQQICQ-----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           A   +TGT GK+S A    +I +     +  LSS     T +   +     LTTP  + L
Sbjct: 116 ALIGITGTKGKTSTAYMAYEILRAYTHDKVALSSTLQVITGSEPQYHYRAHLTTPESVDL 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFN 228
            + +      G+TH+ +E SS      R+ G+    G F N+  DHI  + H T + Y  
Sbjct: 176 FRWMREAVDNGMTHMVMEVSSQAFKMRRVYGLHFNVGIFLNISPDHIGENEHPTFEDYLQ 235

Query: 229 AKMRLFE---------------------ELLPKESPAIIYAD--------DAYSKEVMKR 259
            KM LF+                     EL+       +Y          D Y +     
Sbjct: 236 HKMMLFDHSEQIVLNVDSDHFGELIAHAELMVHRDGIWLYGQEDVDSPKADVYFEATDAN 295

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            H +  +V  VG Q + +H+K                    ++   +PG+F   NAL A 
Sbjct: 296 LHGSVFKVREVGQQAEHLHIKG-------------------EYTLDMPGDFNQSNALAAM 336

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                +G D+  + E LE + V PGR + + T  + G IYVDYAH   S+  +L+ +R  
Sbjct: 337 IATRLVGADAPAMAEGLETVKV-PGRMQVLNT-QKHGTIYVDYAHNYASIAALLQFVRQN 394

Query: 380 TS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            S  ++ +V G  G++   +RP +GK   + AD+  +T D+P+ EDP KI  EI   I  
Sbjct: 395 ESVNQLAIVVGAPGNKGVSRRPGIGKAVSEGADVVYLTSDDPQYEDPAKIADEIQAAITN 454

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  + +R +AI  AI      DV+V+A KG
Sbjct: 455 PKVTIYRELDRTKAIIAAILAAGPDDVVVLAAKG 488


>gi|149195164|ref|ZP_01872255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter
           mediatlanticus TB-2]
 gi|149134716|gb|EDM23201.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter
           mediatlanticus TB-2]
          Length = 408

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 199/431 (46%), Gaps = 66/431 (15%)

Query: 93  LVVDNTRK------FLSLFASRLYGKH------PENIL----------AVTGTSGKSSVA 130
           L+ DNT+       FL  F ++ Y  +      P+ +L           +TGT+GK++ A
Sbjct: 11  LITDNTKDLTTNKIFLKTFQNQKYATNITKFITPKELLDALKLKTKFIGMTGTNGKTTTA 70

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY-LAKALSYLSSQGVTHVSV 187
             +  + +  G +    G      +    ++  LTTP     + +A  Y     V    +
Sbjct: 71  FVLSFLLKNLGFNVVTQGTEGLYFNLEKKENKTLTTPDIFTTIKRAYKYKPDFFV----M 126

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH + Q+R++GI+  A   T+  +DH+DYH++   Y   K   F++    ES  +I 
Sbjct: 127 EVSSHAIAQNRIEGIRFDAKIMTSFSQDHLDYHKSIDEYKKVKESFFQD----ESVKVIN 182

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                      +  N    ++ +G Y  K         ++NK    + V  K      P+
Sbjct: 183 GK--------LKMENGKYSIIEIGNYDFK---------VYNKN---LYVLEKPIVNDIPM 222

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLE-HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            GEF   N  +A      +   S  +L   L     V GR E V   S+   I VD+AHT
Sbjct: 223 AGEFNKMNFSLALKTAEILTNSSFSILNSQLNNFKGVSGRMEIV---SKNPLIIVDFAHT 279

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + +E +L +++    G  IVVFG GG RD+ KR +MG++A   A+  I+T+DNPR E+P
Sbjct: 280 PDGIEKVLSSVK----GEKIVVFGAGGKRDKEKRELMGEVASKYAEFLIITNDNPRCEEP 335

Query: 426 EKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            KI  +I  G  IP  I   +R EAI+ AI++     +L V GKG E      N ++K  
Sbjct: 336 MKIANDIAKGVSIPYEI-ILDRKEAIKKAIKLAKNGKILFVLGKGDEEFIEYCNKKEKFK 394

Query: 484 VDCDIIREILG 494
            D ++I EILG
Sbjct: 395 -DKNVILEILG 404


>gi|322377016|ref|ZP_08051509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
 gi|321282823|gb|EFX59830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
          Length = 481

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 144/508 (28%), Positives = 227/508 (44%), Gaps = 54/508 (10%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61
           D++ KD  F E+I+Q   +   +     + +  DSR   +    FV     K++   F+ 
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSHVVFDTICYDSRKAKEKSLFFVKGAAFKKE---FLI 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
            AI+QG    V    Y +           P ++V + +K +SL A   YG   E +  LA
Sbjct: 65  SAISQGLGWYVAEEDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQEKLKLLA 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYL 177
            TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++  
Sbjct: 116 FTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMNQA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
                TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K     
Sbjct: 175 VQNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK----- 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTIS 294
            LL K S A+I   D     V+K           V  Q   F   +    I N +  + S
Sbjct: 230 RLLMKNSRAVIINSDMDHFSVLKE---------QVADQDHDFYGSQSDNQIENSKAFSFS 280

Query: 295 VEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEF 348
             GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E 
Sbjct: 281 ARGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME- 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +   
Sbjct: 334 VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQ 393

Query: 409 LADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVA 465
             +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++A
Sbjct: 394 HPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIA 453

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +   IV   ++    D  +    L
Sbjct: 454 GKGADCYQIVQGKKEAYPGDAAVAENYL 481


>gi|217033874|ref|ZP_03439298.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10]
 gi|216943637|gb|EEC23082.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10]
          Length = 447

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D +     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKQIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPTNAHTYALDKKAHLNIQAFSLNPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E + +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG++A   A   I+T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E   I
Sbjct: 399 LDALENLKDDEVLLILGKGDENTQI 423


>gi|261838768|gb|ACX98534.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori 51]
          Length = 447

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 185/382 (48%), Gaps = 51/382 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAVRLKCEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHESIENYRDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336
           + K++  +H+                 PL G + +YN L    G+ +   +    ++  L
Sbjct: 246 NFKEIALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLL 288

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E  + V GR E + +      + VD+AHT + ++ + ++ +   + +I  +FG GGDRD+
Sbjct: 289 ENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGDRDK 342

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452
            KRP MG++A   A   ++T DNPRSE+ E I  +I+ GI       IEK +R +AI  A
Sbjct: 343 TKRPKMGEVASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAILNA 401

Query: 453 IEMLNKQDVLVVAGKGHETVHI 474
           +E L   +VL+V GKG E   I
Sbjct: 402 LENLKDDEVLLVLGKGDENTQI 423


>gi|312864606|ref|ZP_07724837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
 gi|311099733|gb|EFQ57946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
          Length = 483

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 227/488 (46%), Gaps = 47/488 (9%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +   W     + +S DSRH+    +F A   V  KE    F+  A+ +G    +    Y 
Sbjct: 26  YAYNWSGVTFDHLSYDSRHVTPSSLFFAKGAVFKKE----FLQGAVEKGLAFYIAEKDYE 81

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQ 135
           +           P ++V++ ++ +SL A   Y  +P++   ILA TGT GK++ A F   
Sbjct: 82  V---------GIPAILVNDIKQAMSLIAMAFY-DNPQDKLKILAFTGTKGKTTAAYFAYN 131

Query: 136 ICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           I ++S   +      +T+   +F + ++LTTP  + L + ++     G +H+ +E SS  
Sbjct: 132 IFKQSQKPAMLSTMNTTLDGETFFK-SQLTTPESLDLFEMMAQAVENGRSHLIMEVSSQA 190

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               R+ G+    G F N+  DHI    H T + YF  K      LL + S A++     
Sbjct: 191 FLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMENSRAVVVNSGM 245

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPG 308
               +++       +V S+ +   F        I N +     + GK    +D    L G
Sbjct: 246 DHFAILRD------QVASIPHD--FYGELSDNQIKNSRAFDFDLTGKLAGHYDI--QLIG 295

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   NAL A   C+ +G   A +   + +   VPGR E V T + G +++VDYAH  +S
Sbjct: 296 DFNQENALAAGLACLRLGASPADIQRGIAET-TVPGRME-VLTQTNGAKVFVDYAHNGDS 353

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEK 427
           L+ +L  +    SG+ I++ G  G++ + +R   G +     D+  I++ D+P  EDP+ 
Sbjct: 354 LKKLLSVVAQHQSGKNILILGAPGNKGESRRADFGAVINHHPDLEVILSADDPNKEDPQV 413

Query: 428 IRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  EI   I   +E   +R +AI+TA+++    QD +++AGKG +   IV       + D
Sbjct: 414 ICQEIASHIKRPVEIIVDREKAIKTALQLTQTAQDAVIIAGKGADAFQIVDGKRASYAGD 473

Query: 486 CDIIREIL 493
             I ++ L
Sbjct: 474 LAIAKKYL 481


>gi|109948221|ref|YP_665449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter acinonychis str. Sheeba]
 gi|109715442|emb|CAK00450.1| murE [Helicobacter acinonychis str. Sheeba]
          Length = 447

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 183/381 (48%), Gaps = 49/381 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ VTGT+GK++ AS +  +       +  +G   T   F  D R     LTTP+ + L 
Sbjct: 69  IIGVTGTNGKTTTASLMYSLLLDLNKKAALLG---TRGFFINDKRIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 GDLEEAMRLECEYFIMEVSSHAIVQERIAGLNFALKILTNITSDHLDFHKSIENYRDAKN 185

Query: 232 RLFEELLPK-----ESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++   K     E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLNPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336
           ++K++  +H+                 PL G + +YN L    G+ +   +    +   L
Sbjct: 246 NVKEMALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLETITPLL 288

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E  + V GR E   +      + VD+AHT++ ++ + ++ +   + +I  +FG GGDRD+
Sbjct: 289 ENFYGVKGRLEIAHSKPL---VVVDFAHTTDGMQQVFESFK---AQKITALFGAGGDRDK 342

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAI 453
            KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+
Sbjct: 343 TKRPKMGAIASCYAHKIILTSDNPRSENEEDIIKDILKGINDPSKVIVEKDRKKAILNAL 402

Query: 454 EMLNKQDVLVVAGKGHETVHI 474
           E L   +VL++ GKG E   I
Sbjct: 403 ENLKDDEVLLILGKGDENTQI 423


>gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
 gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
          Length = 505

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 219/490 (44%), Gaps = 40/490 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP----QAIAQGAEAIVVSSAYSLQDF 82
           +R +  +S DSR +    +F         G  F P     A+  GA A +   + S  D 
Sbjct: 31  DRPVRGMSIDSRAVGPEALFAC------KGAAFKPAYLEDALNAGAAAYLCDES-SEPDL 83

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
           SA     +  LV D+ R  ++  A   YG+  +  +I+ +TGT GKS+ +  ++ I   +
Sbjct: 84  SAHAEGVSH-LVTDDIRPAMAYAARAAYGRPDKRIDIMGITGTKGKSTTSFLLKSIFAAA 142

Query: 141 GLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G+    IG   T   I +F   N  TTP  + L + +   +  G  H+ +E SSH L   
Sbjct: 143 GMRPSIIGSIETDDGIDAFESHN--TTPEAVDLWRHVFNTAESGRKHLVMEVSSHALKYD 200

Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           R  G+ L    F N+GRDHI    H + + YF +K+R+F++       A++  D     E
Sbjct: 201 RTLGLMLDVACFLNIGRDHISPSEHPSFEDYFASKLRIFDQC----RTAVVNLDSDLVDE 256

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           V++ A  A  R+L+ G          + V    +     ++ EG        + G F   
Sbjct: 257 VLEHARRAE-RLLTFGVDRPEADYSARDVRPCRDGIAFDLACEGGARPMTLGMAGLFNAE 315

Query: 314 NALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           NAL A  +    GI   D A  L H+     VPGR E V + +      VDYAH   S +
Sbjct: 316 NALAAIAMARIAGIGFEDIASGLAHVR----VPGRMEVVRSAAGSTIALVDYAHNELSYK 371

Query: 371 MILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
               ++R    + +++ VFG  GD+   +R ++ ++A   AD  I T+++P  EDP  I 
Sbjct: 372 TFFTSVRKEHLAAKVVAVFGAPGDKAFERREVLPRVAAQFADYLIYTEEDPAHEDPRAIA 431

Query: 430 AEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVD 485
            E+    P         +R +AI  A E+  + D V+ +  KG ET     +   ++  D
Sbjct: 432 EELAANTPADTPCEIIVDREQAIIRAFEVAGENDAVVCLLAKGDETRQHRGDSFPEVKSD 491

Query: 486 CDIIREILGL 495
             I RE LG+
Sbjct: 492 LHIARECLGV 501


>gi|195978717|ref|YP_002123961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975422|gb|ACG62948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           MurE [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 481

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 230/505 (45%), Gaps = 60/505 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGA 68
           +F E+++Q   +   +   + + +S DSR      +F A     K D   F+ QAIA+G 
Sbjct: 16  NFREVLDQDG-YHFNYSGLQFDSLSYDSRQADEQTLFFAKGATFKAD---FLKQAIAKGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGK 126
           +  V    Y +           P+++V+N +  +SL A   Y   +H   +LA TGT GK
Sbjct: 72  KIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ A F   + + S   +      +T+   SF + ++LTTP  + L   ++   + G+TH
Sbjct: 123 TTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFK-SQLTTPESLDLFAMMAQCVANGMTH 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H + + YF  K      LL + S
Sbjct: 182 LVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RLLMENS 236

Query: 243 PAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVE 296
            A++        +  +++V  + H+               + K  C  +  +Q  +    
Sbjct: 237 RAVVVNSGMEHFNILAEQVADKPHD--------------FYGKGACNRLLQRQAFSFQAA 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     +   + K  V PGR E V T +  
Sbjct: 283 GKLAGDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRLGIAKTRV-PGRME-VLTMTNQ 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I VDYAH  +SLE +L  +     G+I ++ G  G++ + +R   G++     ++ I+
Sbjct: 341 AKIVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRII 400

Query: 416 -TDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEML-NKQDVLVVAGKG 468
            T D+P  EDP+ I  E    I  +I +      +R EAI+  +E   N+QD L++AGKG
Sbjct: 401 LTADDPNFEDPQLISEE----IASYIHREVDIIIDRKEAIKAGMERCQNEQDALIIAGKG 456

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
            +   IV   +   + D  I +  L
Sbjct: 457 ADAYQIVKGQKTAYAGDLAIAKSYL 481


>gi|317182699|dbj|BAJ60483.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F57]
          Length = 447

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D +     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKQIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E + +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG+IA   A   ++T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEIASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E   I
Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423


>gi|290579966|ref|YP_003484358.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
 gi|254996865|dbj|BAH87466.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
          Length = 483

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 221/485 (45%), Gaps = 53/485 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E   + +S DSR I+A  +F   V        F+ +AI  G    V    Y +       
Sbjct: 34  EVAFHHISYDSRDIKASTLF--FVKGATFKKEFLEKAIESGLTFYVAEKDYQV------- 84

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
               P+++V+N +  + L A   Y    + +  LA TGT GK++ A F   I  + G   
Sbjct: 85  --GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAAYFAYHIL-KQGYRP 141

Query: 145 FQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             I   +T     +F + ++LTTP  + L K ++  ++ G+TH+ +E SS      R+ G
Sbjct: 142 AMISTMNTTLDGKTFFK-SKLTTPESLDLFKMMAQAAANGMTHLIMEVSSQAYLVGRVYG 200

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKE 255
           +    G F N+  DHI    H T + YF  K      LL K S  +I        A  KE
Sbjct: 201 LTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLKHSRYVIVNSQMNHFALVKE 255

Query: 256 -VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQ 311
            V  + H+         + GK+   + V    N +  +  + GK    +D    L G F 
Sbjct: 256 QVADQPHD---------FYGKYSDNQIV----NSKAFSFDLTGKLAGHYD--IQLTGSFN 300

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA+ AA  C+ +G     + + + +   VPGR E V     G +++VDYAH  +SLE 
Sbjct: 301 QENAVAAALACLQLGASQTDIQKGIVQT-TVPGRME-VLVQKNGAKVFVDYAHNRDSLEK 358

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRA 430
           +L  +     G +I++ G  G++ + +R   G +     ++  I+T D+P +EDP+ I  
Sbjct: 359 LLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTADDPNNEDPQLISQ 418

Query: 431 EIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           EI H I   +    +R +AI+ A+ +   + D +++AGKG +   IV       + D ++
Sbjct: 419 EIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIVKGKRTAYAGDIEV 478

Query: 489 IREIL 493
            R+ L
Sbjct: 479 ARKYL 483


>gi|317178199|dbj|BAJ55988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F16]
          Length = 447

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171
           I+ +TGT+GK++ AS +  +       +  +G   T   F  D +     LTTP+ + L 
Sbjct: 69  IVGITGTNGKTTTASLMYSLLLDLNKKTAFLG---TRGFFINDKQIKEKGLTTPTLLELY 125

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK 
Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277
             F++     +   E+ A+    +A++  + K+AH N     L      S+ YQ      
Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
           +LK++  IH+                 PL G + +YN L      + + + + L LE   
Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285

Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             LE  + V GR E + +      + VD+AHT + ++ + ++ +   + +I  +FG GGD
Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           RD+ KRP MG+IA   A   ++T DNPRSE+ E I  +I+ GI       IEK +R +AI
Sbjct: 340 RDKTKRPKMGEIASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474
             A+E L   +VL++ GKG E   I
Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423


>gi|312862991|ref|ZP_07723230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
 gi|311101486|gb|EFQ59690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
          Length = 481

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 236/502 (47%), Gaps = 54/502 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F ++I+Q + +   W     + +S DSR +    +F A       G  F P+ +    +
Sbjct: 16  NFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA------KGAAFKPEFLENAVQ 68

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126
           A  +S   + +D+   I    P ++V + ++ +SL A   Y ++P++   +LA TGT GK
Sbjct: 69  A-GLSFYVAEKDYQVGI----PAIIVSDIKQAMSLVAQAFY-QYPQDKLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ A F   I ++S   +      +T+   +F + N LTTP  + L + ++     G+TH
Sbjct: 123 TTAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFKSN-LTTPESLDLFRMMAEAVDNGMTH 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H T + YF  K  L E      S
Sbjct: 182 LIMEVSSQAYLTKRVYGLIFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLEN-----S 236

Query: 243 PAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            A+I           ++EV  + H+         + GK         + +    +   +G
Sbjct: 237 RAVIVNSGMNHFGFVAEEVADKDHD---------FYGK----DSENTVKHSSGFSFKAKG 283

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           K   D+D    L G+F   NA+ A   C+ +G     + + + +  V PGR E + T + 
Sbjct: 284 KLAGDYDI--QLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQTSV-PGRMEIL-TQAN 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G +++VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     ++ +
Sbjct: 340 GAKVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDV 399

Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHET 471
            ++ D+P  EDP  I  EI   I   +    +R EAI+TA+ E  + +D +V+AGKG + 
Sbjct: 400 TLSADDPNKEDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADA 459

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             IV       + D ++ ++ L
Sbjct: 460 FQIVNGKRTDYAGDIEVAKKYL 481


>gi|261366336|ref|ZP_05979219.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282571939|gb|EFB77474.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 493

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 218/461 (47%), Gaps = 33/461 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +  DSR +  G +FV + G   DGH +  +A A GA  IV             +   
Sbjct: 23  VQTLCYDSRAVTPGALFVCLPGLHTDGHAYAVRAAAAGAVGIVCERPIP------GLPEA 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++ V ++R+ L+  A RLYG+    +  + +TGT GK++ A  V  +   +G     I
Sbjct: 77  LPVIQVTHSRRALAQLAIRLYGEPARQLTMIGITGTKGKTTTAHLVAAVLTAAGRKVGLI 136

Query: 148 GPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           G T+ +      + L  TTP    L + L  +   G     +E SS GL   R+ GI+  
Sbjct: 137 G-TNGVRWPGYRHPLDHTTPESSDLQQLLRRMVDAGCDTCVMEVSSLGLKMDRVTGIEYD 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAG 264
            G FTNL  DHI     + A F A+ R ++ +L +     I+ ADD  ++ ++ + H   
Sbjct: 196 IGIFTNLSPDHIG--PGEHASF-AEYRAWKSVLFRRCRVGIVNADDPQTEAILTQ-HT-- 249

Query: 265 CRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALV 317
           CRV++ G      +        +H    + ++      EG   ++   +PG F +YNAL 
Sbjct: 250 CRVVTYGMDRPADWRAGTDFTLLHRPGLLGVTFTAAGPEGGSREYQLAMPGRFSIYNALA 309

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A      + +    V   L +  VV GR E V  ++    + +DYAH   + E +L  +R
Sbjct: 310 AIAAAGILQLPDTAVQTGL-RTAVVEGRVEPVPIHA-PFTVVLDYAHNEAAAENLLTTLR 367

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                R+IVVFGCGG R + +R  MG+    LAD  IVT+DN R E    I A+I  G+ 
Sbjct: 368 AYRPTRLIVVFGCGGGRSRVRRFGMGEACARLADFCIVTEDNSRGEPLADILADIRTGLR 427

Query: 437 -----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
                  F+E  +R +A+  A++M    D++ V GKGHET 
Sbjct: 428 RGNPDTPFVEISDRRQALYDALDMARPGDIVAVIGKGHETT 468


>gi|315453540|ref|YP_004073810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
 gi|315132592|emb|CBY83220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
          Length = 442

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 185/397 (46%), Gaps = 55/397 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKAL 174
           I+ +TGT+GK++ A+ +  + Q  G S   +G        AQ     LTTPS + L   +
Sbjct: 61  IIGITGTNGKTTTAALIAHLLQALGHSCALLGTRGFFIHNAQVKPKGLTTPSLLELYSDI 120

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   ++G     +E SSH + Q R+ G++  A   TN+  DH+DYH   + Y   K    
Sbjct: 121 ARARAEGAKFFVMEVSSHAIAQERILGLEFAAKVHTNITSDHLDYHGDIETYRAIK---- 176

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + L  E   I+  DD + +     A+   C         +  HL  V A   + +++  
Sbjct: 177 NQFLSDEGLKIVNLDDPHVRFNPTNAYGYACE--------RKTHLS-VNAYSLQPEISAH 227

Query: 295 VE-------------GKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           VE               +   +  PL G   ++N L+ A LC+      AL  + LE L 
Sbjct: 228 VEFHADPRARRDPNSNAEMGIVHAPLMGLHNLHN-LLGALLCV-----RALTKQPLESLC 281

Query: 341 V-------VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
                   V GR E V  N     + VD+AHT++    I  + +   + +I VVFG GGD
Sbjct: 282 SLLGDFPGVEGRMEVVHQNPL---VVVDFAHTADGFVQIFNSFK---AQKIKVVFGAGGD 335

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEA 448
           RD+ KRP+MG++A   A  + +T DNPRSE+P  I  +I+ GI        + + +R  A
Sbjct: 336 RDKSKRPLMGQVASTHALKSYITSDNPRSEEPLAIIEDILSGIASELRTRVVVEPDRKRA 395

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  A+  L   +VL++ GKG E V I+  G+  +  D
Sbjct: 396 IELALSELQSDEVLLILGKGDECVQII--GQAHLPFD 430


>gi|322517405|ref|ZP_08070279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322124003|gb|EFX95559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 481

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 130/502 (25%), Positives = 237/502 (47%), Gaps = 54/502 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F ++I+Q + +   W     + +S DSR +    +F A       G  F P+ +    +
Sbjct: 16  NFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA------KGAAFKPEFLENAVQ 68

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126
           A  +S   + +D+   I    P ++V + ++ +SL A   Y ++P++   +LA TGT GK
Sbjct: 69  A-GLSFYVAEKDYQVGI----PAIIVSDIKQAMSLVAQAFY-QYPQDKLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ A F   I ++S   +      +T+   +F + + LTTP  + L + ++   + G+TH
Sbjct: 123 TTAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFK-STLTTPESLDLFRMMAEAVANGMTH 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H T + YF  K  L E      S
Sbjct: 182 LIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLEN-----S 236

Query: 243 PAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            A+I           ++EV  + H+         + GK         + +    +   +G
Sbjct: 237 RAVIVNSGMNHFGFVAEEVADKDHD---------FYGK----DSENTVKHSSGFSFKAKG 283

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           K   D+D    L G+F   NA+ A   C+ +G     + + + +  V PGR E + T + 
Sbjct: 284 KLAGDYDI--QLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQTSV-PGRMEIL-TQAN 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G +++VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     ++ +
Sbjct: 340 GAKVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDV 399

Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHET 471
            ++ D+P  EDP  I  EI   I   +    +R EAI+TA+ E  + +D +V+AGKG + 
Sbjct: 400 TLSADDPNKEDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADA 459

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             IV       + D ++ ++ L
Sbjct: 460 FQIVNGKRTDYAGDIEVAKKYL 481


>gi|307706003|ref|ZP_07642826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
 gi|307620422|gb|EFN99535.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
          Length = 481

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 227/507 (44%), Gaps = 52/507 (10%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61
           D++ KD  F E+I+Q   +   + +   + +  DSR   +    FV     K++   F+ 
Sbjct: 9   DILKKDSLFREIIDQ-GHYHYNYSDVVFDTICYDSRKAKEKSLFFVKGAAFKKE---FLL 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
            AI+QG    V    Y +           P ++V + +K +SL A   YG   E +  LA
Sbjct: 65  SAISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLIAMEFYGNPQEKLKLLA 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYL 177
            TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++  
Sbjct: 116 FTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMNQA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
                TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K     
Sbjct: 175 VQNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK----- 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LL + S A+I   D     V+K              +  F   +    I N +  + S 
Sbjct: 230 RLLMENSRAVIINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAFSFSA 281

Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFV 349
            GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V
Sbjct: 282 TGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-V 334

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +    
Sbjct: 335 LTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQH 394

Query: 410 ADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAG 466
            +I + +T D+P  E+P  I  EI   I   +EK  +R EAI+ A+ + N + D +++AG
Sbjct: 395 PEIQVFLTADDPNYENPMAIADEISSYIDHPVEKIADRQEAIKAAMAITNHELDAVIIAG 454

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +   IV   ++    D  +    L
Sbjct: 455 KGADCYQIVQGKKEAYPGDAAVAENYL 481


>gi|307262595|ref|ZP_07544225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872018|gb|EFN03732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 244

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 106/177 (59%), Gaps = 8/177 (4%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDY 362
           L G F V N L A    + +G D   ++E    L  V GR E V +         + VDY
Sbjct: 52  LIGAFNVNNLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDY 111

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+
Sbjct: 112 AHTPDALEKALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRT 171

Query: 423 EDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           ED  KI A+I++G    +EK     +R +AI+TAIE  N++DV+++AGKGHE   I+
Sbjct: 172 EDNAKIMADILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 227


>gi|307706212|ref|ZP_07643029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
 gi|307618402|gb|EFN97552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
          Length = 481

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 143/498 (28%), Positives = 229/498 (45%), Gaps = 57/498 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61
           D++ KD  F E+I+Q   +   +     + +  DSR   +    FV     K++   F+ 
Sbjct: 9   DILKKDGLFREIIDQ-GYYHYNYSHVVFDTICYDSRKAKEKSLFFVKGAAFKKE---FLI 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---IL 118
            AI+QG    V    Y +           P ++V + +K +SL A   YG +P+    +L
Sbjct: 65  SAISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYG-NPQKKLKLL 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSY 176
           A TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++ 
Sbjct: 115 AFTGTKGKTTAAYFAYNILSQEHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMNQ 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
                 TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K    
Sbjct: 174 AVQNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK---- 229

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293
             LL + S A+I   D     V+K           V  Q   F   +    I N +  + 
Sbjct: 230 -RLLMENSRAVIINSDMDHFSVLKE---------QVADQDHDFYGSQSNNQIENSKAFSF 279

Query: 294 SVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFE 347
           S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E
Sbjct: 280 SATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME 333

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +  
Sbjct: 334 -VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLN 392

Query: 408 DLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVV 464
              +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++
Sbjct: 393 QHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVII 452

Query: 465 AGKGHETVHIVTNGEKKM 482
           AGKG +   IV  G+K++
Sbjct: 453 AGKGADCYQIV-QGKKEV 469


>gi|297520608|ref|ZP_06938994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 262

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 134/255 (52%), Gaps = 7/255 (2%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH  
Sbjct: 11  TTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGD 70

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIH 278
            + Y  AK  L+ E    +  AII ADD   +  + +  +A    +    +    G+++ 
Sbjct: 71  MEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLK 128

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              V    +   +  S    D +    L G F V N L+A    +A+G   A +L+   +
Sbjct: 129 ANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAAR 188

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           L  V GR E V T      + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GK
Sbjct: 189 LQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGK 247

Query: 399 RPIMGKIALDLADIA 413
           RP+MG IA + AD+A
Sbjct: 248 RPLMGAIAEEFADVA 262


>gi|88607959|ref|YP_506139.1| hypothetical protein NSE_0245 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600128|gb|ABD45596.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 469

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 202/444 (45%), Gaps = 19/444 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++SD + +   ++F A     E  H  I +AI +GA +I+ +  Y  +  +  +  
Sbjct: 14  RIKNITSDPQKVGKDFLFYA---PSEKEHAHIREAINRGARSILTNQKYEEECLAQGVN- 69

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                V    ++      S ++ K P  + AVTGTSGK SV  F  Q+C  +G  +  + 
Sbjct: 70  ---FFVHTQPQQIYHEVCSCMWKKQPAYMCAVTGTSGKRSVGHFFSQVCTLAGKKAVSLS 126

Query: 149 ----PTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               PT  +  + + D+ +   + +Y    L  L+ + + +  +  S   ++   +D + 
Sbjct: 127 ASNEPTDALGLWQEKDHMILDAADMY--SILDDLAGRRIEYCCLAISGAAIESRMIDSVN 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L A +F+NL RD ++  +     F  K+RL  E+LP++   ++     Y+  +++   N 
Sbjct: 185 LKAAAFSNLLRDDLEQPEDIDKRFQMKVRLLSEVLPEDGIMVLPVASEYTTRIIQHCPNK 244

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V + G     I L         Q +T+ V GK+      + G+F   N + A GL I
Sbjct: 245 --KVCTYGRATSDIQLISQLPTQKGQILTMKVLGKEMVIHTNILGKFHGNNLVTAMGLAI 302

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
           + GID + + EH E++  + G  EF+       +I  D A T + L  +L +I+      
Sbjct: 303 SCGIDPSSI-EH-EQISPLAGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYN 360

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + +V  C  + +      M KIA  + +  I T D+  S   EK R E++   P  IE 
Sbjct: 361 DVTLVLRCSENYEGKNTLKMAKIAAKMVNRIIFTSDSNGSTLTEKSRRELMSCCPKAIEI 420

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +R +A+  AI      +++V+ G
Sbjct: 421 EDRKKAMEYAINNCKPSEIIVMQG 444


>gi|77408653|ref|ZP_00785387.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
 gi|77172771|gb|EAO75906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
          Length = 483

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 136/488 (27%), Positives = 224/488 (45%), Gaps = 46/488 (9%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +   W +    N +S DSR I +  +F A      KE    ++  AI  G     +S   
Sbjct: 26  YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
           S  D+ A I    P+++V++ +K +SL +   Y  +P+N   +LA TGT GK++ A F  
Sbjct: 77  SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            + + +   +      +T+   SF + + LTTP  + L + ++      +TH+ +E SS 
Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                R+ G+    G F N+  DHI    H T + YF       + LL + S A++    
Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
                ++K         +   + G +        I   Q  +  V+GK +  +   L G+
Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYNINLIGK 297

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL A   C+ +G+    +   + +   VPGR E V T + G +I+VDYAH  +SL
Sbjct: 298 FNQENALAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428
           + +L  +     G II+V G  G++ Q +R   G +     ++  I+T D+P  EDP  I
Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415

Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             EI   I  P  I   +R EAI  A  + N K D +++AGKG +   I+       S D
Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGD 474

Query: 486 CDIIREIL 493
            ++ ++ L
Sbjct: 475 LEVAKKYL 482


>gi|22537538|ref|NP_688389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae 2603V/R]
 gi|46577055|sp|Q8DYT2|MURE_STRA5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22534419|gb|AAN00262.1|AE014255_20 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 2603V/R]
          Length = 484

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 222/487 (45%), Gaps = 44/487 (9%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +   W +    N +S DSR I +  +F A      KE    ++  AI  G     +S   
Sbjct: 26  YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
           S  D+ A I    P+++V++ +K +SL +   Y  +P+N   +LA TGT GK++ A F  
Sbjct: 77  SETDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            + + +   +      +T+   SF + + LTTP  + L + ++      +TH+ +E SS 
Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLIMEVSSQ 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                R+ G+    G F N+  DHI    H T + YF       + LL + S A++    
Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                ++K             Y    I   K  + H K ++  + + K       L G+F
Sbjct: 246 MDHFNIVKEQVEYIPHDFYGDYSENVITESKAFSFHVKGKLENTYDIK-------LIGKF 298

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NA+ A   C+ +G+    +   + +   VPGR E V T + G +I+VDYAH  +SL+
Sbjct: 299 NQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSLK 356

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIR 429
            +L  +     G II+V G  G++ Q +R   G +     ++  I+T D+P  EDP  I 
Sbjct: 357 KLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVIS 416

Query: 430 AEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            EI   I  P  I   +R EAI  A  + N K D +++AGKG +   I+       S D 
Sbjct: 417 QEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGDL 475

Query: 487 DIIREIL 493
           ++ ++ L
Sbjct: 476 EVAKKYL 482


>gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 481

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 229/488 (46%), Gaps = 46/488 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I     +   +++   +++S DSR   +  +F   V  +     F+ +
Sbjct: 9   DILKKDQNFREIIADGDYY-FNYQDLTFDKISYDSRKADSRTLF--FVKGEHFKREFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILA 119
           A+A G     +    S  D    I    P+L+V++ ++ +SL A   YG HPE    +LA
Sbjct: 66  AVAAG-----LGFYLSETDLEVGI----PVLLVNDIKQAMSLIAMEFYG-HPEQKLKLLA 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177
            TGT GK++ A F   I ++S   +      +T+   +F + + LTTP  + L + ++  
Sbjct: 116 FTGTKGKTTAAYFAYNILKQSHKPALLSTMNTTLDGETFFK-STLTTPESLDLFEMMAQA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            +   TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K     
Sbjct: 175 VANARTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK----- 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LL   S A++        +V+        +V + G+   F       +I   Q  +   
Sbjct: 230 RLLMDNSRAVVVNSGMDHFQVLAE------QVANYGHD--FYGPDSANSILQSQAFSFEA 281

Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +GK    +D    L G F   NA+ A   C+ +G     +   + +  V PGR E V T 
Sbjct: 282 QGKLAGSYDI--QLIGRFNQENAIAAGLACLRLGASLEDIQAGIAQTRV-PGRME-VLTQ 337

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           S G +++VDYAH  +SL  +L  ++    G+ ++V G  G++ + +R   G +     +I
Sbjct: 338 SNGAKVFVDYAHNGDSLAKLLSVVQEHQKGQTVLVLGATGNKGESRRKDFGLLLNQHPEI 397

Query: 413 -AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGH 469
             I+T D+P  EDP  I  EI   I   ++   +R EAI+ AI + + + D +++AGKG 
Sbjct: 398 KVILTADDPNREDPIAIAKEIASYISFEVDMIADREEAIKKAISLTSAEGDAVILAGKGA 457

Query: 470 ETVHIVTN 477
           +   I+ +
Sbjct: 458 DAYQIIND 465


>gi|296110395|ref|YP_003620776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295831926|gb|ADG39807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 491

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 219/479 (45%), Gaps = 47/479 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPIL 93
           D+R ++A  +FV + G       F P+ + Q  G   +V  +   +         + P  
Sbjct: 34  DTRQVKANTLFV-VKG------AFRPEYLTQTDGVSGLVTETRLDV---------SLPQW 77

Query: 94  VVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            V + +K LS+ +   +G  +H   I A TGT GK++ A     I + +  +   +   S
Sbjct: 78  QVTDVQKALSILSMAFFGYPQHDLWIGAFTGTKGKTTAAYMAYNILKNT--TDKHVALFS 135

Query: 152 TISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           T+     +N        LTTP    L K +      G+TH+ +E SS    + R+ G++ 
Sbjct: 136 TVDRITGNNSEDKKKSDLTTPESYELFKDMRRSVDNGMTHLVMEVSSQAYLKQRVYGLRY 195

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KR 259
             G+F N+  DHI  + H T + Y   K+ LF+         II A+  +  E+M   K+
Sbjct: 196 NVGAFLNISPDHIGPNEHPTFEDYLAHKLMLFDH----SDQVIINAESDHLSEIMTHAKQ 251

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALV 317
            H+        G  G + +  +  AIH  +   +  + K     +   LPG+F   NA+ 
Sbjct: 252 THDLVYTYSLAGKGGAYTYTSQESAIHESRLTVLPSDLKALAGHYRLNLPGDFNESNAMA 311

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +    G     ++  L+++  +PGR   +  +  G   +VDYAH   S+  +L+  +
Sbjct: 312 ALIMSALAGASHDNMIRGLDEV-FIPGRMLSLPISGHG-VTFVDYAHNYASMHALLRFAQ 369

Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HG 435
                GR++VV G  G++   +R   G++  +LAD+  +T D+P+ E P  I  EI  H 
Sbjct: 370 NQYPEGRVLVVVGSPGNKGVSRRADFGRVVSELADVVYLTADDPQFESPMVIAKEIASHI 429

Query: 436 IPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
               +E   + NRI+AI  AI    ++D+++VAGKG +    +   ++    D  ++++
Sbjct: 430 TSETLEVHFEMNRIQAINQAISQATEKDIVIVAGKGEDPYQKINGVDEPYIGDYAVVKQ 488


>gi|71902980|ref|YP_279783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS6180]
 gi|123640434|sp|Q48V28|MURE_STRPM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71802075|gb|AAX71428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS6180]
          Length = 481

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 134/508 (26%), Positives = 230/508 (45%), Gaps = 48/508 (9%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A     K D   
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGFSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ +AI  G +  +    Y L           P+++V + +K +SL A   YG   E + 
Sbjct: 62  YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMVFYGNPQEKLK 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            LA TGT GK++ A F   + + S   + F    T+        ++LTTP  + L   ++
Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
              + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K   
Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229

Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              LL + S A++     D +S    +V  + H     V         I   +  +   K
Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAK 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    +         L G F   NA+ A   C+ +G   A + + + K  V PGR E 
Sbjct: 283 GQLAGHYD-------IQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME- 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T +   +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++   
Sbjct: 334 VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQ 393

Query: 409 LADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVA 465
             ++ ++ T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++A
Sbjct: 394 HPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIA 453

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +   IV   +   + D  I R  L
Sbjct: 454 GKGADAYQIVKGQQVAYAGDLAIARHYL 481


>gi|24380055|ref|NP_722010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus mutans UA159]
 gi|46577050|sp|Q8DST2|MURE_STRMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24378047|gb|AAN59316.1|AE014997_6 putative UDP-N-acetylmuramoylananine-D-glutamate-2,6-
           diaminopimelate ligase; UDP-MurNac-tripeptide synthetase
           [Streptococcus mutans UA159]
          Length = 483

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 218/485 (44%), Gaps = 53/485 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E   + +S DSR I+A  +F   V        F+ +AI  G    V    Y +       
Sbjct: 34  EVAFHHISYDSRDIKASTLF--FVKGATFKKEFLEKAIESGLTFYVAEKDYQV------- 84

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
               P+++V+N +  + L A   Y    + +  LA TGT GK++ A F   I  + G   
Sbjct: 85  --GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAAYFAYHIL-KQGYRP 141

Query: 145 FQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             I   +T     +F + ++LTTP  + L K ++   + G+TH+ +E SS      R+ G
Sbjct: 142 AMISTMNTTLDGKTFFK-SKLTTPESLDLFKMMAQAVANGMTHLIMEVSSQAYLVGRVYG 200

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-----YSK 254
           +    G F N+  DHI    H T + YF  K      LL K S  +I            +
Sbjct: 201 LTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLKHSRYVIVNSQMNHFALIKE 255

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQ 311
           +V  + H+         + GK+        I N +  +  + GK    +D    L G F 
Sbjct: 256 QVADQPHD---------FYGKY----SDNQIINSKAFSFDLTGKLAGHYDI--QLTGSFN 300

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA+ AA  C+ +G     + + + +   VPGR E V     G +++VDYAH  +SLE 
Sbjct: 301 QENAVAAALACLQLGASQTDIQKGIVQT-TVPGRME-VLIQKNGAKVFVDYAHNGDSLEK 358

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRA 430
           +L  +     G +I++ G  G++ + +R   G +     ++  I+T D+P +EDP+ I  
Sbjct: 359 LLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTADDPNNEDPQLISQ 418

Query: 431 EIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           EI H I   +    +R +AI+ A+ +   + D +++AGKG +   I+       + D ++
Sbjct: 419 EIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIIKGKRTAYAGDIEV 478

Query: 489 IREIL 493
            R+ L
Sbjct: 479 ARKYL 483


>gi|76797685|ref|ZP_00779954.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
 gi|76586979|gb|EAO63468.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
          Length = 484

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 222/487 (45%), Gaps = 44/487 (9%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +   W +    N +S DSR I +  +F A      KE    ++  AI  G     +S   
Sbjct: 26  YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
           S  D+ A I    P+++V++ +K +SL +   Y  +P+N   +LA TGT GK++ A F  
Sbjct: 77  SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            + + +   +      +T+   SF + + LTTP  + L + ++      +TH+ +E SS 
Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLIMEVSSQ 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                R+ G+    G F N+  DHI    H T + YF       + LL + S A++    
Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                ++K             Y    I   K  + H K ++  + + K       L G+F
Sbjct: 246 MDHFNIVKEQVEYIPHDFYGDYSENVITESKAFSFHVKGKLENTYDIK-------LIGKF 298

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NA+ A   C+ +G+    +   + +   VPGR E V T + G +I+VDYAH  +SL+
Sbjct: 299 NQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSLK 356

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIR 429
            +L  +     G II+V G  G++ Q +R   G +     ++  I+T D+P  EDP  I 
Sbjct: 357 KLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVIS 416

Query: 430 AEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            EI   I  P  I   +R EAI  A  + N K D +++AGKG +   I+       S D 
Sbjct: 417 QEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGDL 475

Query: 487 DIIREIL 493
           ++ ++ L
Sbjct: 476 EVAKKYL 482


>gi|262283209|ref|ZP_06060976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261461|gb|EEY80160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 481

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 218/462 (47%), Gaps = 49/462 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            +++S DSR++    +F   V  +     F+  A+  G +  +  S     DF   I   
Sbjct: 35  FDKISYDSRNVTNTTLF--FVKGENFKKEFLEGAVESGLKFYISES-----DFEVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+LVV++ ++ +SL A   YG +P++   ILA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLVVNDIKQAMSLIAMEFYG-NPQDKLKILAFTGTKGKTTSAYFAYQILSQSHRPALL 142

Query: 147 IGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   +   TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGKNFFK-SSLTTPESLDLFKMMAQAVANDRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            A  F N+  DHI    H T + YF  K      LL + S A++        +++K    
Sbjct: 202 DASVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMENSRAVVVNSGMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+ +   F        I + Q     V GK    +D    L G F   NAL A 
Sbjct: 254 ---QVSSIEHD--FYGENSSNTIIDSQAFNFEVSGKLAGKYDI--QLIGRFNQENALAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      L  ++K   L  VPGR E V T   G +++VDYAH  +SL  +L  +
Sbjct: 307 LACLRLGAS----LTDIQKGITLTRVPGRME-VLTQKNGAKVFVDYAHNGDSLTKLLNVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHG 435
           +    G+ ++V G  G++ + +R   G +     +I  I+T D+P  EDP  I  EI   
Sbjct: 362 QEHQKGQTVLVLGATGNKGESRRKDFGILLNKHPEIQVILTADDPNREDPVTIAKEIASY 421

Query: 436 IPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIV 475
           I   +    +R EAI+ A+ +  ++ D +++AGKG +   IV
Sbjct: 422 ISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQIV 463


>gi|254796629|ref|YP_003081465.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
 gi|254589866|gb|ACT69228.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
          Length = 470

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 199/443 (44%), Gaps = 18/443 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++SD + +   ++F A     E  H  I +AI +GA++I+ +     Q +   +  
Sbjct: 16  RIKNITSDPQKVGKDFLFYA---PSEKEHAHIREAINRGAKSILTN-----QKYEECLEQ 67

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                V    ++      S ++ K P  + A+ GTSG+ SV  F  Q+C  +G  +  + 
Sbjct: 68  GVDFFVHAQPQQIYHGICSFMWKKQPTFVCAIIGTSGRKSVGHFFSQVCTLAGKKAVTLS 127

Query: 149 ----PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               P  T   + + + L + +   +   L  L+ + + +  +  S+  ++   +D + L
Sbjct: 128 VSNEPMDTPKLWQEKDHLISDAA-DMYNILDDLAERRIEYCCLAISAAAIESRMIDSVNL 186

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A +FTNL RD ++  +        K+RL  E+LP+    ++     Y+  +M+   N  
Sbjct: 187 KAAAFTNLLRDDLEQPEDVDRRLQTKIRLLSEILPENGIMVLPVASEYTTRIMQHCPNK- 245

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +V + G     I L         Q +T+ + GK+      + G+FQ  N + A GL I+
Sbjct: 246 -KVCTYGRATSDIQLISQLPTQKGQILTMKILGKEMVVHTNILGKFQGNNLVTAMGLAIS 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGR 383
            GID + + EH E++  + G  EF+       +I  D A T + L  +L +I+       
Sbjct: 305 CGIDPSSI-EH-EQISPLAGYMEFLEDYGEERKIMTDCAQTPSELHDLLLSIKWHFPYND 362

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           + +V  C  + +      M KIA  + +  I T D+  S   EK R E++   P  IE  
Sbjct: 363 VTLVLRCSENYEARNTLKMAKIAAKMVNRIIFTSDSHGSMLTEKTRRELMSCCPKAIEIE 422

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +R +A+  AI      +++V+ G
Sbjct: 423 DRKKAMEYAINNCKPSEIIVMQG 445


>gi|76787595|ref|YP_330032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae A909]
 gi|77411511|ref|ZP_00787855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
 gi|123601572|sp|Q3K0C1|MURE_STRA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|76562652|gb|ABA45236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae A909]
 gi|77162437|gb|EAO73404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
          Length = 484

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 135/488 (27%), Positives = 224/488 (45%), Gaps = 46/488 (9%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +   W +    N +S DSR I +  +F A      KE    ++  AI  G     +S   
Sbjct: 26  YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
           S  D+ A I    P+++V++ +K +SL +   Y  +P+N   +LA TGT GK++ A F  
Sbjct: 77  SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            + + +   +      +T+   SF + + LTTP  + L + ++      +TH+ +E SS 
Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                R+ G+    G F N+  DHI    H T + YF       + LL + S A++    
Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
                ++K         +   + G +        I   Q  +  V+GK +  +   L G+
Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYDIKLIGK 297

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NA+ A   C+ +G+    +   + +   VPGR E V T + G +I+VDYAH  +SL
Sbjct: 298 FNQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428
           + +L  +     G II+V G  G++ Q +R   G +     ++  I+T D+P  EDP  I
Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415

Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             EI   I  P  I   +R EAI  A  + N K D +++AGKG +   I+       S D
Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNHDNYSGD 474

Query: 486 CDIIREIL 493
            ++ ++ L
Sbjct: 475 LEVAKKYL 482


>gi|25011503|ref|NP_735898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae NEM316]
 gi|77413369|ref|ZP_00789563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
 gi|46577059|sp|Q8E4E0|MURE_STRA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24413041|emb|CAD47120.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160611|gb|EAO71728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
          Length = 484

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 135/488 (27%), Positives = 224/488 (45%), Gaps = 46/488 (9%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +   W +    N +S DSR I +  +F A      KE    ++  AI  G     +S   
Sbjct: 26  YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
           S  D+ A I    P+++V++ +K +SL +   Y  +P+N   +LA TGT GK++ A F  
Sbjct: 77  SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            + + +   +      +T+   SF + + LTTP  + L + ++      +TH+ +E SS 
Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                R+ G+    G F N+  DHI    H T + YF       + LL + S A++    
Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
                ++K         +   + G +        I   Q  +  V+GK +  +   L G+
Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYDIKLIGK 297

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NA+ A   C+ +G+    +   + +   VPGR E V T + G +I+VDYAH  +SL
Sbjct: 298 FNQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428
           + +L  +     G II+V G  G++ Q +R   G +     ++  I+T D+P  EDP  I
Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415

Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             EI   I  P  I   +R EAI  A  + N K D +++AGKG +   I+       S D
Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGD 474

Query: 486 CDIIREIL 493
            ++ ++ L
Sbjct: 475 LEVAKKYL 482


>gi|319745329|gb|EFV97644.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 484

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 135/488 (27%), Positives = 224/488 (45%), Gaps = 46/488 (9%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +   W +    N +S DSR I +  +F A      KE    ++  AI  G     +S   
Sbjct: 26  YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITTG-----LSFYV 76

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
           S  D+ A I    P+++V++ +K +SL +   Y  +P+N   +LA TGT GK++ A F  
Sbjct: 77  SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            + + +   +      +T+   SF + + LTTP  + L + ++      +TH+ +E SS 
Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                R+ G+    G F N+  DHI    H T + YF       + LL + S A++    
Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
                ++K         +   + G +        I   Q  +  V+GK +  +   L G+
Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYDIKLIGK 297

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NA+ A   C+ +G+    +   + +   VPGR E V T + G +I+VDYAH  +SL
Sbjct: 298 FNQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428
           + +L  +     G II+V G  G++ Q +R   G +     ++  I+T D+P  EDP  I
Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415

Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             EI   I  P  I   +R EAI  A  + N K D +++AGKG +   I+       S D
Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGD 474

Query: 486 CDIIREIL 493
            ++ ++ L
Sbjct: 475 LEVAKKYL 482


>gi|50913697|ref|YP_059669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|139474340|ref|YP_001129056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|68052497|sp|Q5XDM7|MURE_STRP6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224788|sp|A2RG75|MURE_STRPG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|50902771|gb|AAT86486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|134272587|emb|CAM30854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 481

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 231/511 (45%), Gaps = 54/511 (10%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A     K D   
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ +AI  G +  +    Y L           P+++V + +K +SL A   YG   E + 
Sbjct: 62  YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            LA TGT GK++ A F   + + S   + F    T+        ++LTTP  + L   ++
Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
              + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K   
Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229

Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              LL + S A++     D +S    +V  + H              F        I   
Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-------------MFYGPLSDNQITTS 274

Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           Q  +   +G+    +D    L G F   NA+ A   C+ +G   A + + + K  V PGR
Sbjct: 275 QAFSFEAKGQLAGHYDI--QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V T +   +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++
Sbjct: 332 ME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRV 390

Query: 406 ALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVL 462
                ++ ++ T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +
Sbjct: 391 IHQHPNLTVILTADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQGAKDAV 450

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKG +   IV   +   + D  I +  L
Sbjct: 451 IIAGKGADAYQIVKGQQVAYAGDLAIAKHYL 481


>gi|322391669|ref|ZP_08065137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
 gi|321145480|gb|EFX40873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
          Length = 481

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 145/513 (28%), Positives = 228/513 (44%), Gaps = 78/513 (15%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAE 69
           F E+I+  + +   +     + +S DSR  +   +F A     KE+   ++  AI+QG  
Sbjct: 17  FREIIDHEN-YLYNYTNVTFDSISYDSRKAKENCLFFAKGAAFKEE---YLVSAISQGLG 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126
             V    Y +           P++VV+N +K +SL A   YG +P+    ILA TGT GK
Sbjct: 73  WYVAEKDYQV---------GIPVIVVNNIKKAMSLIAMVFYG-NPQKKLKILAFTGTKGK 122

Query: 127 SSVASFVQQIC----QRSGLSSFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++ A F   I     Q + LS+      G T   SSF      +TP  I L   ++    
Sbjct: 123 TTAAYFAYHILSQRYQTALLSTMNTTLDGKTFFKSSF------STPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS     HR+ G+    G F N+  DHI    H T + YF  K      L
Sbjct: 177 NNRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L + S A++   D        +EV ++ H+             F   +    I N +   
Sbjct: 232 LMENSRAVVVNSDMDHFNLLKEEVEQKEHD-------------FYGSQSDNQIKNSKAFR 278

Query: 293 ISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRF 346
            S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR 
Sbjct: 279 FSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIQKGIAETRVPGRM 332

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V T   G ++ +DYAH  +SL  ++  +    +G I +V G  G++ + +R   G + 
Sbjct: 333 E-VLTQKNGAKVIIDYAHNGDSLTKLISVVEEHHTGNIALVLGSTGNKGESRRKDFGLLL 391

Query: 407 LDLADIAI-VTDDNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQ-D 460
               +I + +T D+P  EDP  I  EI     H +   I+   R EAI+TA+ + ++  D
Sbjct: 392 NKHPEIQVFLTTDDPNYEDPRAIADEISSYIEHPVKTIID---REEAIKTAMSITSQPLD 448

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +++AGKG +   I+   +++   D  I +  L
Sbjct: 449 AVILAGKGADCYQIINGVKEEYPGDAAIAKRYL 481


>gi|21909820|ref|NP_664088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS315]
 gi|28896487|ref|NP_802837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes SSI-1]
 gi|25453113|sp|Q8K8H6|MURE_STRP3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21904006|gb|AAM78891.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptococcus pyogenes
           MGAS315]
 gi|28811741|dbj|BAC64670.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,
           6-diaminopimelate ligase [Streptococcus pyogenes SSI-1]
          Length = 481

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 229/506 (45%), Gaps = 44/506 (8%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A     K D   
Sbjct: 6   QLLDILKKDHNFREVLDA-DEYHYHYQGFSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ +AI  G +  +    Y L           P+++V + +K +SL A   YG   E + 
Sbjct: 62  YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            LA TGT GK++ A F   + + S   + F    T+        ++LTTP  + L   ++
Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
              + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K   
Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              LL + S A++         VM        +V     +  F        I   Q  + 
Sbjct: 230 --RLLMENSRAVVI------NSVMDHFSFLADQV--ADQEHVFYGPLSDNQITTSQAFSF 279

Query: 294 SVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +G+    +D    L G F   NA+ A   C+ +G   A + + + K  V PGR E V 
Sbjct: 280 EAKGQLAGHYDI--QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T +   +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     
Sbjct: 336 TMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHP 395

Query: 411 DIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGK 467
           ++ ++ T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++AGK
Sbjct: 396 NLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   IV   +   + D  I +  L
Sbjct: 456 GADAYQIVKGQQVAYAGDLAIAKHYL 481


>gi|15674533|ref|NP_268707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71910139|ref|YP_281689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS5005]
 gi|21362717|sp|Q9A196|MURE_STRP1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13621637|gb|AAK33428.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes M1 GAS]
 gi|71852921|gb|AAZ50944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS5005]
          Length = 481

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 133/508 (26%), Positives = 230/508 (45%), Gaps = 48/508 (9%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A     K D   
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGFSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ +AI  G +  +    Y L           P+++V + +K +SL A   YG   E + 
Sbjct: 62  YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            LA TGT GK++ A F   + + S   + F    T+        ++LTTP  + L   ++
Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
              + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K   
Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229

Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              LL + S A++     D +S    +V  + H     V         I   +  +   K
Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAK 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    +         L G F   NA+ A   C+ +G   A + + + K  V PGR E 
Sbjct: 283 GQLAGHYD-------IQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME- 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T +   +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++   
Sbjct: 334 VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQ 393

Query: 409 LADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVA 465
             ++ ++ T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++A
Sbjct: 394 HPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIA 453

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +   IV   +   + D  I +  L
Sbjct: 454 GKGADAYQIVKGQQVAYAGDLAIAKHYL 481


>gi|19745543|ref|NP_606679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS8232]
 gi|94987955|ref|YP_596056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94989829|ref|YP_597929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|25453128|sp|Q8P2B4|MURE_STRP8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224785|sp|Q1JN87|MURE_STRPC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224786|sp|Q1JID8|MURE_STRPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19747663|gb|AAL97178.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes MGAS8232]
 gi|94541463|gb|ABF31512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94543337|gb|ABF33385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 481

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 133/508 (26%), Positives = 230/508 (45%), Gaps = 48/508 (9%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A     K D   
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ +AI  G +  +    Y L           P+++V + +K +SL A   YG   E + 
Sbjct: 62  YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            LA TGT GK++ A F   + + S   + F    T+        ++LTTP  + L   ++
Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
              + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K   
Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229

Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              LL + S A++     D +S    +V  + H     V         I   +  +   K
Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAK 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    +         L G F   NA+ A   C+ +G   A + + + K  V PGR E 
Sbjct: 283 GQLAGHYD-------IQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME- 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T +   +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++   
Sbjct: 334 VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQ 393

Query: 409 LADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVA 465
             ++ ++ T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++A
Sbjct: 394 HPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIA 453

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +   IV   +   + D  I +  L
Sbjct: 454 GKGADAYQIVKGQQVAYAGDLAIAKHYL 481


>gi|295398699|ref|ZP_06808721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
 gi|294973052|gb|EFG48857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
          Length = 514

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 228/494 (46%), Gaps = 48/494 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN ++ DSR + A  +FV    N +  +L    A+ +GA A +     S QD++A I   
Sbjct: 34  INRITFDSRAVTANTLFVCKGLNFKASYL--KDAVDRGAVAYL-----SEQDYAADI--- 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSSFQ 146
            P ++V++ R  ++  A+  Y + P   +A++G   T GK++ A FV QI         Q
Sbjct: 84  -PGIIVEDIRLAMAQLANFFY-QSPWQDVAISGITGTKGKTTTAGFVNQILTLDSQEKGQ 141

Query: 147 IGPTSTISSFAQD------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             P    S+F  D      + LTTP  + L + L+ +   GV   ++E SS  L  HR D
Sbjct: 142 PLPGFVSSTFNYDGLEKTPSTLTTPEAMDLYEMLATMRDNGVKRATMEVSSQALKYHRAD 201

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +K+   +F N+  DHI    H T   YF +K+R+F+        A+I  D  + +E++K
Sbjct: 202 DVKMEVVAFLNISPDHISPVEHPTFADYFQSKLRIFDH----GKVAVINEDTDHYEEILK 257

Query: 259 RAHNAGC--RVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            A +A    R+++V  +         ++     KQ   +  +G++      + G F + N
Sbjct: 258 AAEDAENIQRIVTVSRKNPAADYFADELAFSETKQTFVVKNQGEEIPMALNVLGHFNINN 317

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           ALVAA +     ++ A + + L       GR E   +        VD+AH   S E +  
Sbjct: 318 ALVAAAIARENDVEWATIQKALGDAK-TDGRMEIYRSTDNQLTFVVDFAHNKISFEELFS 376

Query: 375 NIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEI 432
           +++ +     I +VFG  G + + +R  MG++A L+  +I + +DD P  ED  KI AEI
Sbjct: 377 SVKEMAPDNDIRIVFGSAGGKAENRRADMGRVAGLNTNEIYLTSDD-PNFEDSYKIMAEI 435

Query: 433 IHGI----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
              I                G+   A + AI    K   +VVAGKG E   I  NG  + 
Sbjct: 436 EEAINEVNPDAKVRSNLDRTGSIYMAYKDAIAS-GKPTTIVVAGKGSEDT-IKINGRNEF 493

Query: 483 SV-DCDIIREILGL 495
            V D + +++++  
Sbjct: 494 YVPDFEYVQQLIAF 507


>gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 503

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 193/401 (48%), Gaps = 31/401 (7%)

Query: 11  FPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL++ + I  M   R+ +I  +S  S  ++ G +FV + G K DGH ++ +A   GA 
Sbjct: 4   LKELLSSIEIKNMDDERDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYLGKAAQNGAV 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A +V     LQ+       + P  VV N+R  L+   +R YG   +   ++ +T T+GK+
Sbjct: 64  AAIVEE---LQE-----DVDIPQYVVSNSRIALAKLGARFYGDPSQKMKLIGITATNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  V  I ++SG  +  IG     I   +    LTTP  + L   LS +  +GV+HV+
Sbjct: 116 TTSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQMVDKGVSHVT 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+ HR++ +     +  N+ R+HID H + + YF AK  L      + S A++
Sbjct: 176 MEVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRN-ASENSIAVL 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISV--------- 295
             D  YS  ++ +       V++ G   K  H+  K +     + + T+ +         
Sbjct: 235 NLDCPYSASLVDQTK---AEVITFGVNSKEGHIACKDLDLTTGRAKFTLEILKPFTANGQ 291

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             E  +F+    +PG   VYN++VA  + +  G+ +A + E L+    V  RF+F+    
Sbjct: 292 QYEPSEFEVQLLVPGLHSVYNSMVAITVSLLCGVSTATIQETLKTFAGVERRFQFIFEED 351

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
              +I  D+   S ++++ L  ++ +   ++ +V+   G+R
Sbjct: 352 I--KIIDDHFANSGNIDVTLGTLKYMDYEKLHLVYAIRGER 390


>gi|229139234|ref|ZP_04267809.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|270000495|ref|YP_003329007.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|217065749|gb|ACJ79999.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|228644293|gb|EEL00550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 252

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 104/180 (57%), Gaps = 12/180 (6%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F VYNAL A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT
Sbjct: 59  LVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHT 117

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP
Sbjct: 118 PDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDP 177

Query: 426 EKIRAEIIHGIPGFIEKGN---RIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + I  +I     GF++  N   ++E     AI  AI M +  D++++AGKGHET  I+ +
Sbjct: 178 QAIMKDI---EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKD 234


>gi|307708388|ref|ZP_07644854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
 gi|307615487|gb|EFN94694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
          Length = 481

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 230/508 (45%), Gaps = 54/508 (10%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61
           D++ KD  F E+I+Q   +   +     + +  DSR   +    FV     K++   F+ 
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNYSHVIFDTICYDSRKAKEKSLFFVKGAAFKKE---FLI 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---IL 118
            AI+QG    V    Y +           P ++V + +K +SL A   YG +P+    +L
Sbjct: 65  SAISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYG-NPQKKLKLL 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSY 176
           A TGT GK++ A F   I  +    +      +T+   +F + + LTTP  I L   ++ 
Sbjct: 115 AFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMNQ 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
                 TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K    
Sbjct: 174 AVQNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK---- 229

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL + S A+I   D     V+K       +V    +   F   +    I N +  + S
Sbjct: 230 -RLLMENSRAVIINSDMDHFSVLKE------QVEDQDHD--FYGSQSDNQIENSKAFSFS 280

Query: 295 VEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEF 348
             GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E 
Sbjct: 281 ATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME- 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +   
Sbjct: 334 VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQ 393

Query: 409 LADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVA 465
             +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++A
Sbjct: 394 HPEIQVFLTADDPNYEDPMAIADEIRSYINHPVEKIADRQEAIKAAMAITNHELDAVIIA 453

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +   IV   ++    D  +    L
Sbjct: 454 GKGADCYQIVQGKKEAYPGDAAVAENYL 481


>gi|77405779|ref|ZP_00782864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
 gi|77175636|gb|EAO78420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
          Length = 484

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 221/488 (45%), Gaps = 46/488 (9%)

Query: 21  FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +   W +    N +S DSR I +  +F A      KE    ++  AI  G    V    Y
Sbjct: 26  YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAGLSFYVSEIDY 81

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134
            +         + P+++V++ +K +SL +   Y  +P+N   +LA TGT GK++ A F  
Sbjct: 82  GV---------DIPVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131

Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            + + +   +      +T+   SF + + LTTP  + L + ++      +TH+ +E SS 
Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                R+ G+    G F N+  DHI    H T + YF       + LL + S A++    
Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSKAVVVNSQ 245

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
                ++K         +   + G +        I   Q  +  V+GK +  +   L G+
Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYDIKLIGK 297

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NA+ A   C+ +G+    +   + +   VPGR E V T + G +I+VDYAH  +SL
Sbjct: 298 FNQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428
           + +L  +     G II+V G  G++ Q +R   G +     ++  I+T D+P  EDP  I
Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415

Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             EI   I  P  I   +R EAI  A  + N K D +++AGKG +   I+       S D
Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGD 474

Query: 486 CDIIREIL 493
            ++ ++ L
Sbjct: 475 LEVAKKYL 482


>gi|325690643|gb|EGD32644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK115]
          Length = 481

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 222/467 (47%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A++ G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   + G TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I   D    +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDHSRAVIVNSDMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + Q  +    GK    +D    L G F   NA+ A 
Sbjct: 254 ---QVASM--EHDFYGAGSSNTITDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAIAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +++VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPIAIAEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   +EK  +R EAI+ A+ + +++ D +++AGKG +   IV  GEK
Sbjct: 422 ISYPVEKIADREEAIKKALSLTDQEGDAVILAGKGADAYQIV-EGEK 467


>gi|94993717|ref|YP_601815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|166224787|sp|Q1J890|MURE_STRPF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94547225|gb|ABF37271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 481

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 133/508 (26%), Positives = 230/508 (45%), Gaps = 48/508 (9%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A     K D   
Sbjct: 6   QLLDILKKDHNFREVLDS-DGYHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ +AI  G +  +    Y L           P+++V + +K +SL A   YG   E + 
Sbjct: 62  YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            LA TGT GK++ A F   + + S   + F    T+        ++LTTP  + L   ++
Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
              + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K   
Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229

Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              LL + S A++     D +S    +V  + H     V         I   +  +   K
Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAK 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    +         L G F   NA+ A   C+ +G   A + + + K  V PGR E 
Sbjct: 283 GQLAGHYD-------IQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME- 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T +   +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++   
Sbjct: 334 VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQ 393

Query: 409 LADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNK-QDVLVVA 465
             ++ ++ T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +  + +D +++A
Sbjct: 394 HPNLTVILTADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQEAKDAVIIA 453

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +   IV   +   + D  I    L
Sbjct: 454 GKGADAYQIVKGQQVAYAGDLAIATHYL 481


>gi|210631902|ref|ZP_03297114.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
 gi|210159827|gb|EEA90798.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
          Length = 552

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 202/437 (46%), Gaps = 39/437 (8%)

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           TP LVV + R+ ++L A  +Y +HPE+   ++ +TGT GKS+VA  ++ I   +G     
Sbjct: 120 TPALVVSDVRRAMALVAPVIY-RHPEDQLHVVGITGTKGKSTVAYMLRSILVAAGQEPSI 178

Query: 147 IGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   T     + ++  TTP    L + L      G   + +E SS GL   R+ G+   
Sbjct: 179 LGSIETDDGKVRYESHNTTPEAPDLWRHLRNTVDAGRRTMVMEVSSQGLKYDRVLGLPFE 238

Query: 206 AGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            G F N+GRDHI    H   + YF +K+R+F +    E   +  A D +   V++ A +A
Sbjct: 239 IGCFLNIGRDHISGVEHPDFEDYFASKLRIFNQC---EVAVVNLATD-HVDRVLQAAKSA 294

Query: 264 GC-RVLSVGYQGKFIHLKKVCAIH-------------NKQQVTI---SVEGK---DFDFL 303
            C    +V + G+  H  KV  +                   T+   + EG+   +    
Sbjct: 295 PCVATFAVEHAGEGSHGGKVWPVEPLFIASGVTQLPTGGLAFTVRERAAEGEIACEEHIE 354

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG F V NAL A  +   +G+    +   L ++  VPGR E V +        VDYA
Sbjct: 355 LGMPGLFNVDNALAAISMARLLGVGYDAIRAGLAQIR-VPGRMELVSSADGHVLAIVDYA 413

Query: 364 HTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H   S E + K+++      R++ +FG  G + Q +R  + ++A   AD  + T+++P  
Sbjct: 414 HNELSFETLFKSVKAEYPDRRVVALFGAPGGKAQERREALPRVAGAYADHLVYTEEDPAH 473

Query: 423 EDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIE---MLNKQDVLVVAGKGHETVHIVT 476
           +  E I AE++   P  +      +R EA+RT +E      +  V+++  KG E      
Sbjct: 474 DRVEDICAELVKNTPAGVSHEVILDREEAVRTVLERALACGEPSVVLLLAKGDEETMHRG 533

Query: 477 NGEKKMSVDCDIIREIL 493
           +   ++  D  I RE+L
Sbjct: 534 DEYPEVKSDLAIAREVL 550


>gi|157149815|ref|YP_001450915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074609|gb|ABV09292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 481

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 222/468 (47%), Gaps = 50/468 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            +++S DSR++    +F   V  +     F+  A+  G +  +  S     DF   I   
Sbjct: 35  FDKISYDSRNVTNTTLF--FVKGENFKKEFLEGAVESGLKFYISES-----DFEVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+LVV++ ++ +SL A   YG +P++   ILA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLVVNDIKQAMSLIAMEFYG-NPQDKLKILAFTGTKGKTTSAYFAYQILSQSHRPALL 142

Query: 147 IGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L + ++   +   TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGKNFFK-SSLTTPESLDLFEMMAQAVANDRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            A  F N+  DHI    H T + YF  K      LL + S A+I        +++K    
Sbjct: 202 DASVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMENSRAVIVNSGMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+ +   F        I + Q  +    GK    +D    L G F   NAL A 
Sbjct: 254 ---QVSSIEHD--FYGENSSNTIIDSQAFSFEASGKLAGKYDI--QLIGRFNQENALAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      L  ++K   L  VPGR E V T   G +++VDYAH  +SL  +L  +
Sbjct: 307 LACLRLGAS----LTDIQKGIALTRVPGRME-VLTQKNGAKVFVDYAHNGDSLTKLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHG 435
           +    G+ I+V G  G++ + +R   G +     +I  I+T D+P  EDP  I  EI   
Sbjct: 362 QEHQKGQTILVLGATGNKGESRRKDFGILLNKHPEIQVILTADDPNREDPVTIAKEIASY 421

Query: 436 IPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKK 481
           I   +    +R EAI+ A+ +  ++ D +++AGKG +   IV NG K+
Sbjct: 422 ISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQIV-NGIKE 468


>gi|306827935|ref|ZP_07461202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304429854|gb|EFM32896.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 481

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 230/511 (45%), Gaps = 54/511 (10%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A     K D   
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGFSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ +AI  G +  +    Y L           P+++V + +K +SL A   YG   E + 
Sbjct: 62  YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            LA TGT GK++ A F   + + S   + F    T+        ++LTTP  + L   ++
Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
              + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K   
Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229

Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              LL + S A++     D +S    +V  + H              F        I   
Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-------------VFYGPLSDNQITTS 274

Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           Q  +    G+    +D    L G F   NA+ A   C+ +G   A + + + K  V PGR
Sbjct: 275 QAFSFEANGQLAGHYDI--QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V T +   +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++
Sbjct: 332 ME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRV 390

Query: 406 ALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVL 462
                ++ ++ T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +
Sbjct: 391 IHQHPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAV 450

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKG +   IV   +   + D  I +  L
Sbjct: 451 IIAGKGADAYQIVKGQQVAYAGDLAIAKHYL 481


>gi|325284699|ref|YP_004264162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324316188|gb|ADY27302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 504

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 214/477 (44%), Gaps = 50/477 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W   +++ V+  +  +  G +F AI G + DGH F+ +A  +GA A +       +   A
Sbjct: 26  WAAAEVSAVTHRADWVTPGALFAAIRGERHDGHAFLQEAAERGAVAALG------EGLPA 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSV----ASFVQQIC 137
              S  P L V + R  L+  A+ L G HP     ++ VTGT GK++     A+ ++   
Sbjct: 80  GQHSPLPYLQVPDARAALADAAALLSG-HPSRELKVVGVTGTDGKTTTSWLTAALLRAGG 138

Query: 138 QRSGL---SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           Q +GL   + +Q+ P   + ++      TTP    L   L  +         +E SSH L
Sbjct: 139 QSTGLLSSAGYQL-PDGQLRAY--PAHFTTPEAPQLQGLLREMVDARAQAAVIETSSHAL 195

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              R+ G+   A  +T+L ++H+D+H T + YF AK RL E    +   A++  DD +++
Sbjct: 196 TLERVRGVAWDAAIWTHLSQEHLDFHGTLEDYFAAKRRLIE----RAPLAVLNLDDPWTR 251

Query: 255 --------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLF 304
                   E+   A  AG    +   +G+              + + +V+G    F    
Sbjct: 252 HLRGVAPQELTYSAAQAGADWRASDLRGE-----------AGGRASFAVDGPAGRFRATL 300

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G FQ+ NAL A       G+ +A +   L +    PGR E V +     R+  D AH
Sbjct: 301 PLAGAFQMGNALAAMAAAHHFGVSAAELQAGLREFGGPPGRMETVPSRPGQPRVVSDSAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           T  SLE  L+ +R +T G++  V G   G RD  K   M  +A   AD  I+T+ + R  
Sbjct: 361 TPLSLENTLRALRPLTGGQLWAVVGSAAGGRDTSKWGPMAAVASAWADQVILTEADHRET 420

Query: 424 DPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             E+I   +    G   +   G+R +AI  A+      D +++A KG E  H +  G
Sbjct: 421 PLEQILEAMSAAAGQDNWQCIGDRAQAIAYAVTHAGPDDTVLIANKGGE--HFLQRG 475


>gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 512

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 214/478 (44%), Gaps = 53/478 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFV--AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           P +    ++ ++S DSR +  G +F    +  N E    ++  AI +GA A +    Y+ 
Sbjct: 31  PEKAARAEVTDLSYDSRKVSDGTLFFCKGLKFNPE----YLASAIKEGATAAISELVYT- 85

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
            D       +TP ++V + +K +++ A   YG   E +  +  TGT GK++   F + I 
Sbjct: 86  -DKLDQEAQSTPQIIVTDVQKAMAVIARHFYGCPDEKLELIGFTGTKGKTTSVYFTRHIL 144

Query: 138 QRSGLSSFQIGPT-STISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
                 + + GP     SS  +        +  LTTP  + L + +      G+ ++++E
Sbjct: 145 ------AHEFGPVVGQFSSIDECVDGKNFIEAHLTTPESLDLFRMMKEAVDNGMKYLAME 198

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAII 246
            SS    + R+ G+    G F N+  DHI    H T   Y   K     +++      I+
Sbjct: 199 VSSQAYKKSRVYGLHFNIGVFLNISPDHISLVEHPTFDDYLWCK----SQIIVNSDTVIL 254

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG---------YQGKFIHLKKVCAIHNKQQVTISVEG 297
                Y + + ++AH  G ++++ G         Y GK  H     + HN     ++ E 
Sbjct: 255 NRYMDYYELLAQKAHELGKKLITFGSDESDADYRYHGK-DHGYFDVSTHNDNLPEVTGE- 312

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG F   NAL A  +   +  D++   + L++  V PGR EF+  N+ G  
Sbjct: 313 ----FRVMIPGHFNYSNALAAITVSAQLKDDTSDFAQGLKETKV-PGRMEFLKNNA-GMV 366

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VDYAH   SL    K ++     GR+IVV G  G + + +R  +G+   + AD+AI+T
Sbjct: 367 ACVDYAHNYLSLSESFKFMKHEYPDGRLIVVIGAAGGKAESRRKDVGRALSEYADVAILT 426

Query: 417 DDNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            ++   EDP    E I+  I +     I   +R+ AI+ A EM    D + +A KG E
Sbjct: 427 SEDNFFEDPHHIDETIKEHITNPNVKVIINVDRVAAIKQAFEMAKPGDAMFMAAKGRE 484


>gi|116617847|ref|YP_818218.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096694|gb|ABJ61845.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 490

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 188/401 (46%), Gaps = 25/401 (6%)

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR---- 139
           I  + P   V N +K LSL +   +    E +   A TGT GK++ A F   + +     
Sbjct: 70  IDVDLPQWQVTNVQKALSLLSMAFFDYPQEQLWIGAFTGTKGKTTAAYFAYTMLKEATNN 129

Query: 140 -SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            + L S     T   +S  + + LTTP    L K +  +   G+TH+ +E SS    ++R
Sbjct: 130 HTALFSTVDRITGPQASDKKKSDLTTPESYELFKDMRQVVDNGMTHLVMEVSSQAYLKNR 189

Query: 199 LDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           + G++   G+F N+  DHI  + H T + Y   K+ L    L      I+ A+  +   +
Sbjct: 190 VYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKLML----LDHSDEVIVNAETDHFDTI 245

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYN 314
              A  A  +V +   Q   +   +  AIH  +   +  E  +    +   +PG+F   N
Sbjct: 246 YTYAKKAHHKVYTYSRQ---MFTSEESAIHESRFTVVKSEFNEMLGSYRLNVPGDFNESN 302

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A  L    G+    +++ L+++  +PGR   +  N  G   +VDYAH   S++ +L 
Sbjct: 303 AMAAMMLVSFAGVKHQAMVKGLDEV-FIPGRMLSLPINGHG-VAFVDYAHNFVSMQALLS 360

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +    +GR++VV G  G++   +R   G +  DLAD+  +T D+P+ E+P  I  EI 
Sbjct: 361 FAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDLADVVYLTADDPQFENPLDIAHEIA 420

Query: 434 HGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             I         + NRI AI  AI   N+ D+++VAGKG +
Sbjct: 421 AHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVAGKGED 461


>gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 518

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 192/422 (45%), Gaps = 45/422 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           + L+ L+    PEL  + +       + +   I+ ++ +S+ +  G IFVA  G K D H
Sbjct: 11  ISLKKLLQNTSPELFTEFADLGTTGTDIEGVTISGITDNSKEVTPGKIFVACQGTKVDAH 70

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            +I +AIA GA  +++  A    D+   ++ S  P   V N RK L+  AS  Y  HP +
Sbjct: 71  DYIEEAIANGASTVILERA----DYIDKVKDSAIPYFKVRNGRKTLAKLASTFYD-HPSH 125

Query: 117 ILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
            L VTG +G +   +    +  I  + G+ S  IG  +  I+    D++LTTP    L  
Sbjct: 126 RLIVTGITGTNGKTTTTTLIDYIINQLGVKSGLIGTVNCKINGEEFDSKLTTPPATELYS 185

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +  +  + V +++ E SSHGL Q R+  I       TN+  DH+D+H +   YF +K +
Sbjct: 186 LIEKMVQKEVKYLTKEVSSHGLKQDRVSAINFDIAGITNISYDHMDFHDSWDDYFKSKTK 245

Query: 233 LFEELLPKESPAIIYADDA------------------YSKEVMKRAHNAGCRVL--SVGY 272
            F+ L P +S +++ ADD                    S   M  A N   +    S  Y
Sbjct: 246 FFQMLSP-DSISVLNADDPNAISMGDKTRSKVITYGISSPGAMITAENVDLKPFETSFTY 304

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           Q K    +++  + NK      V  +  +    +PG+  +YN L+A  +CI  G D   V
Sbjct: 305 QIK----EELPTVTNK-----PVRPQSHNLKIRMPGKHNIYNTLLAISVCIMAGFDPEQV 355

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           ++  E+   +  R E +  NS    I  D AH   S+  + + I  +   R+++VF   G
Sbjct: 356 IKTAEQFPGLFRRLEVIYKNSF--TIIDDCAHNPASIRSVFETISQLPFNRLVIVFAIRG 413

Query: 393 DR 394
            R
Sbjct: 414 SR 415


>gi|209558880|ref|YP_002285352.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540081|gb|ACI60657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus pyogenes NZ131]
          Length = 481

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 218/487 (44%), Gaps = 45/487 (9%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +   ++      +S DSR +    +F A     K D   ++ +AI  G +  +    Y L
Sbjct: 26  YHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD---YLKEAITNGLQLYISEVDYEL 82

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                      P+++V + +K +SL A   YG   E +  LA TGT GK++ A F   + 
Sbjct: 83  ---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHML 133

Query: 138 QRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           + S   + F    T+        ++LTTP  + L   ++   + G+TH+ +E SS     
Sbjct: 134 KESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLV 193

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD--DAY 252
            R+ G+    G F N+  DHI    H T + YF  K      LL + S A++     D +
Sbjct: 194 DRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMENSRAVVINSGMDHF 248

Query: 253 S---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           S    +V  + H     V         I   +  +   K Q+    +         L G 
Sbjct: 249 SFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAKGQLAGHYD-------IQLIGH 296

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NA+ A   C+ +G   A + + + K  V PGR E V T +   +++VDYAH  +SL
Sbjct: 297 FNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME-VLTMTNHAKVFVDYAHNGDSL 354

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKI 428
           E +L  +    +G+++++ G  G++ + +R   G++     ++ ++ T D+P  EDPE I
Sbjct: 355 EKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVILTADDPNFEDPEDI 414

Query: 429 RAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
             EI   I   +E   +R +AI+ A+ +    +D +++AGKG +   IV   +   + D 
Sbjct: 415 SKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQIVKGQQVAYAGDL 474

Query: 487 DIIREIL 493
            I +  L
Sbjct: 475 AIAKHYL 481


>gi|840843|emb|CAA58873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 325

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 11/333 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  ++QL  FP   R+  I E++ DS  ++   +F+ + G  +DG   I  A+ +GA A
Sbjct: 1   MPMSLSQL--FPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATA 58

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           +    AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 59  V----AYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPDLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           G F + N L A G  + +G     +L  L +L 
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQ 325


>gi|69244104|ref|ZP_00602640.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|258614113|ref|ZP_05711883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium DO]
 gi|293563966|ref|ZP_06678373.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|314940304|ref|ZP_07847471.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|314941860|ref|ZP_07848731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|314949519|ref|ZP_07852854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
 gi|314952899|ref|ZP_07855867.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|314994520|ref|ZP_07859793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|314995273|ref|ZP_07860385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|68196561|gb|EAN10987.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|291604056|gb|EFF33583.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|313590529|gb|EFR69374.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|313591098|gb|EFR69943.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|313595021|gb|EFR73866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|313599344|gb|EFR78189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|313640480|gb|EFS05060.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|313644133|gb|EFS08713.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
          Length = 501

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 226/487 (46%), Gaps = 51/487 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 39  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 86  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + +S     G+TH+ +E SS      R+ G
Sbjct: 143 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +    + R
Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256

Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311
                 ++ ++ Y    +  +  ++     H    +  +  +++    +D L  L G F 
Sbjct: 257 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A       G  S    + L++  V PGR + +   S G  +YVDYAH   SL+ 
Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +LK  +     GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  
Sbjct: 373 LLKFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432

Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++    D 
Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 492

Query: 487 DIIREIL 493
            I++ ++
Sbjct: 493 AIVKRLI 499


>gi|257880464|ref|ZP_05660117.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257891505|ref|ZP_05671158.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257894552|ref|ZP_05674205.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260562463|ref|ZP_05832973.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
 gi|257814692|gb|EEV43450.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257827865|gb|EEV54491.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257830931|gb|EEV57538.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260073148|gb|EEW61493.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
          Length = 509

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 226/487 (46%), Gaps = 51/487 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 47  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 94  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + +S     G+TH+ +E SS      R+ G
Sbjct: 151 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 210

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +    + R
Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 264

Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311
                 ++ ++ Y    +  +  ++     H    +  +  +++    +D L  L G F 
Sbjct: 265 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 322

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A       G  S    + L++  V PGR + +   S G  +YVDYAH   SL+ 
Sbjct: 323 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 380

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +LK  +     GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  
Sbjct: 381 LLKFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 440

Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++    D 
Sbjct: 441 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 500

Query: 487 DIIREIL 493
            I++ ++
Sbjct: 501 AIVKRLI 507


>gi|212696049|ref|ZP_03304177.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676958|gb|EEB36565.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 371

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 176/389 (45%), Gaps = 33/389 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK++ A+ +  +  + G     IG   + + +       TTP    L + L 
Sbjct: 1   MIGVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILI 60

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + + +  +E SSHGL   R  GI    G FTNL  +H+D+H+T   YF AKM    
Sbjct: 61  EAKKENIKNAVMETSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAKMI--- 117

Query: 236 ELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            LL      ++  DD Y   +KE+ K A       +S+    K+          N ++V 
Sbjct: 118 -LLNNSKKQVVNLDDDYGKRAKEIFKDA-----LTISINEDSKY-------RAKNIKRVD 164

Query: 293 ISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +E       F L   G + +YN+L A  +   +G     + + LE    V  RFEF+ 
Sbjct: 165 LGLEFTVNGVKFHLNRFGHYDIYNSLCAIAIANDLGYKLEEISKALENFIGVKSRFEFI- 223

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N  G  I VD+AHT  + E + K++      +I  V+G  GDR    R  +GKI+    
Sbjct: 224 ENKLGINIVVDFAHTPEAFENLFKDLP--KDKKIYAVYGINGDRTYDIRKAVGKISAKYG 281

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV 464
             +++T D+P+ +  E I  +I  G+     KG      +R EAI+  I    K D + +
Sbjct: 282 VFSVITTDDPKFDTFENISQQIKEGVDE--NKGESIIIKDRKEAIKYGISHAKKGDFVFM 339

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKG E         K    + + IRE+L
Sbjct: 340 LGKGEEKFLKFNANIKTYYNEKETIREVL 368


>gi|146318305|ref|YP_001198017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 05ZYH33]
 gi|146320499|ref|YP_001200210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 98HAH33]
 gi|253751469|ref|YP_003024610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|253753370|ref|YP_003026511.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|253755801|ref|YP_003028941.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|166224789|sp|A4W0C1|MURE_STRS2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224791|sp|A4VU28|MURE_STRSY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145689111|gb|ABP89617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           05ZYH33]
 gi|145691305|gb|ABP91810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           98HAH33]
 gi|251815758|emb|CAZ51359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|251818265|emb|CAZ56074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|251819616|emb|CAR45345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|319757886|gb|ADV69828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis JS14]
          Length = 481

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 138/493 (27%), Positives = 222/493 (45%), Gaps = 77/493 (15%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           W + + + +S DSR +    +F A  +   KE    F+ +AI  G    V    Y +   
Sbjct: 30  WTDVQFDALSYDSRTVSPMTLFFAKGLAFKKE----FLEKAIEAGLAFYVSEINYEV--- 82

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139
                   P ++V + ++ +SL A   +G HP+    +LA TGT GK++ A F   I ++
Sbjct: 83  ------GIPAIIVHDIKQAMSLIAMEFHG-HPQKQLKLLAFTGTKGKTTAAYFAFNILKQ 135

Query: 140 SGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           S   +      +T+   +F + + LTTP  + L   ++     G+TH+ +E SS      
Sbjct: 136 SKKPAMLSTMNTTLDGKTFFK-STLTTPESLDLFAMMAEAVKNGMTHLIMEVSSQAYLVK 194

Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           R+ G+    G F N+  DHI    H T + YF  K      LL   S A+I         
Sbjct: 195 RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMDNSRAVIV-------- 241

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-- 313
                 NAG     V  +             ++ Q++ S  G DF     L G + +   
Sbjct: 242 ------NAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSA-GFDFTATGKLAGHYDIQLI 294

Query: 314 ------NALVAAGLCIAIGIDSALVLEHLEKLHV------VPGRFEFVGTNSRGGRIYVD 361
                 NA+ A   C+ +G         LE +H       VPGR E V T   G +++VD
Sbjct: 295 GGFNQENAIAAGLACLRLGAS-------LEDIHTGIAQTNVPGRME-VLTQQNGAKVFVD 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNP 420
           YAH  +S++ ++  +    +G++ ++ G  G++ + +R   G +  D   I  I+T D+P
Sbjct: 347 YAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADDP 406

Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIV 475
             EDP    E+IRA +      FI   +R EAIRTA+   +  +D +++AGKG +   IV
Sbjct: 407 NREDPAAIAEQIRAHMTR-TSNFIL--DREEAIRTAMSQTSSPKDAVIIAGKGADAYQIV 463

Query: 476 TNGEKKMSVDCDI 488
            NGEK  + D D+
Sbjct: 464 -NGEKA-AYDGDL 474


>gi|330859320|emb|CBX69667.1| hypothetical protein YEW_CM10490 [Yersinia enterocolitica W22703]
          Length = 192

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 102/176 (57%), Gaps = 10/176 (5%)

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N LVA    +++G     +L     L  V GR E      +   + VDYAHT +
Sbjct: 2   GAFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPD 60

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ 
Sbjct: 61  ALEKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQA 120

Query: 428 IRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I A+I+ G+   ++ G+      R EA+ +AI      DV+++AGKGHE   +V N
Sbjct: 121 IVADILSGL---LDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGN 173


>gi|291563560|emb|CBL42376.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SS3/4]
          Length = 484

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 135/491 (27%), Positives = 227/491 (46%), Gaps = 47/491 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ ++EV  DSR  +   +FV I G+  D H FIP  +  G + +VV     +       
Sbjct: 11  DQNVDEVIYDSRKARPDSVFVCIQGSTRDSHEFIPDVLRAGCKVLVVEKEVEVP------ 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASFVQQICQRSGLSS 144
            ++  ++ V++ R  L+  ++  +G   E ++ +  T  K     +  ++ + + +G  +
Sbjct: 65  -ADVTVIRVESGRLALAELSAARFGYPAEKLITIGITGTKGKTTTSYMIKAVLEAAGKKT 123

Query: 145 FQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             IG    +     F   N  TTP    +      +   G     +E SS  L  HR+ G
Sbjct: 124 GLIGTNGAVIGDVKFPTSN--TTPESYVVQDYFHKMVEAGCECCVMEVSSQALMLHRVGG 181

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           I    G FTN+  DHI    H++ + Y   K RL    L      I+     +  EV+K 
Sbjct: 182 IMFDYGLFTNISPDHIGPKEHKSFEEYLFYKSRL----LTVCKTGIVNRLTDHYDEVVK- 236

Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQV 312
             +A CR+L+        + G  IH     + H+   +  S+ G  D      +PG+F  
Sbjct: 237 --DATCRLLTYALNGNADFMGDDIHYA---SNHDFVGIEFSIHGMLDGRVRVGMPGKFNA 291

Query: 313 YNALVAAGLC-IAIGIDSALVLEHLEKLHV-------VPGRFEFVGTNSRGGRIYVDYAH 364
            NAL A  +C +A+   S ++ +H ++  +       V GR E +   S+   + VDYAH
Sbjct: 292 DNALAALAVCTLALSGGSGVLDDHTKQAILGSLVKVRVDGRME-IAHVSKKCSVIVDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            + S+E +L  +R     R++ VFGCGG+R + +R  MG+I   +AD+ I+T DNPR E 
Sbjct: 351 NAVSMESLLTTLRDYHPKRLVCVFGCGGNRARDRRYSMGEIGGKMADLCIITADNPRFEK 410

Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
            E I  +I  G+      ++   +R EAI  AI    + D++ + GKGHE    +  G K
Sbjct: 411 NEDIIKDIEVGLAKTDGTYLVIPDRQEAIFYAIRNAEEGDMIAIIGKGHEDYQEI-EGVK 469

Query: 481 KMSVDCDIIRE 491
              +D +++ E
Sbjct: 470 HHFLDREVVEE 480


>gi|256957467|ref|ZP_05561638.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
 gi|256947963|gb|EEU64595.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
          Length = 506

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 229/490 (46%), Gaps = 45/490 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A +     +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 259 LKETAQHQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  +
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 494

Query: 484 VDCDIIREIL 493
            D  + + I+
Sbjct: 495 GDFALAKMII 504


>gi|323351057|ref|ZP_08086714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
 gi|322122781|gb|EFX94490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
          Length = 481

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A+  G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVTAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL     YG HPE    +LA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLVMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   + G TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I        +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDYFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + Q  +    GK    +D    L G F   NA+ A 
Sbjct: 254 ---QVASL--EHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +I+VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G++     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   +EK  +R EAI+ A+ + +++ D +++AGKG +   IV  GEK
Sbjct: 422 ISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467


>gi|257418283|ref|ZP_05595277.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
 gi|257160111|gb|EEU90071.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
          Length = 508

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 223/482 (46%), Gaps = 45/482 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR I A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDITAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ +   +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  S
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYS 494

Query: 484 VD 485
            D
Sbjct: 495 GD 496


>gi|227432271|ref|ZP_03914266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351970|gb|EEJ42201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 490

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 187/401 (46%), Gaps = 25/401 (6%)

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR---- 139
           I  + P   V N +K LSL +   +    E +   A TGT GK++ A F   + +     
Sbjct: 70  IDVDLPQWQVTNVQKALSLLSMAFFDYPQEQLWIGAFTGTKGKTTAAYFAYTMLKEATNN 129

Query: 140 -SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            + L S     T   +S  + + LTTP    L K +  +   G+TH+ +E SS    ++R
Sbjct: 130 HTALFSTVDRITGPQASDKKKSDLTTPESYELFKDMRQVVDNGMTHLVMEVSSQAYLKNR 189

Query: 199 LDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           + G++   G+F N+  DHI  + H T + Y   K+ L    L      I+ A+  +   +
Sbjct: 190 VYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKLML----LDHSDEVIVNAETDHFDTI 245

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYN 314
              A     +V +   Q   +   +  AIH  +   +  E  +    +   +PG+F   N
Sbjct: 246 YTYAKKTHHKVYTYSRQ---MFTSEESAIHESRFTVVKSEFNEMLGSYRLNVPGDFNESN 302

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A  L    G+    +++ L+++  +PGR   +  N  G   +VDYAH   S++ +L 
Sbjct: 303 AMAAMMLVSFAGVKHQAMVKGLDEV-FIPGRMLSLPINGHG-VAFVDYAHNFVSMQALLS 360

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +    +GR++VV G  G++   +R   G +  DLAD+  +T D+P+ E+P  I  EI 
Sbjct: 361 FAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDLADVVYLTADDPQFENPLDIAHEIA 420

Query: 434 HGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             I         + NRI AI  AI   N+ D+++VAGKG +
Sbjct: 421 AHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVAGKGED 461


>gi|315034403|gb|EFT46335.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0027]
          Length = 514

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 229/490 (46%), Gaps = 45/490 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A +     +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 267 LKETAQHQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  +
Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 502

Query: 484 VDCDIIREIL 493
            D  + + I+
Sbjct: 503 GDFALAKMII 512


>gi|307270255|ref|ZP_07551567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
 gi|306513398|gb|EFM82018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
          Length = 511

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 228/490 (46%), Gaps = 45/490 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 42  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 93  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  +
Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 499

Query: 484 VDCDIIREIL 493
            D  + + I+
Sbjct: 500 GDFALAKMII 509


>gi|257083598|ref|ZP_05577959.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
 gi|256991628|gb|EEU78930.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
          Length = 508

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 220/467 (47%), Gaps = 49/467 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   IP +  +++G   EAI  A+ +     D +V+AGKG
Sbjct: 436 CQEIQAHITKEIPVYTILDRG---EAIAHALSLSTTADDAIVLAGKG 479


>gi|315170766|gb|EFU14783.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1342]
          Length = 516

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 45/467 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKVMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +
Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 489


>gi|293557173|ref|ZP_06675725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
 gi|291600674|gb|EFF30974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
          Length = 501

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 39  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 86  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + +S     G+TH+ +E SS      R+ G
Sbjct: 143 TALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +    + R
Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256

Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311
                 ++ ++ Y    +  +  ++     H    +  +  +++    +D L  L G F 
Sbjct: 257 ETADLFQIPTITYGRLEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A       G  S    + L++  V PGR + +   S G  +YVDYAH   SL+ 
Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L+  +     GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  
Sbjct: 373 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432

Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++    D 
Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 492

Query: 487 DIIREIL 493
            I++ ++
Sbjct: 493 AIVKRLI 499


>gi|255971128|ref|ZP_05421714.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
 gi|255962146|gb|EET94622.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
          Length = 480

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 222/469 (47%), Gaps = 49/469 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 9   QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 59

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 60  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 117

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 118 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 175

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 176 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 231 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 290 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 347

Query: 370 EMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R   S GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 348 KNLLTFVREEHSDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 407

Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +  +++G   EAI  A+ +     D +V+AGKG +
Sbjct: 408 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKGAD 453


>gi|158834070|gb|ABW81840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 126/256 (49%), Gaps = 7/256 (2%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N+ TT S I + + LS + +  VT  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NQNTTASAIEVQQILSNMLTHKVTFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275
           H     Y  AK  LF +   K    II  DD   +  +    NA        +  G QG 
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGA 123

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++  +K+    N   +         +   PL G F V N L+     +A+      +L+ 
Sbjct: 124 WMSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD
Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242

Query: 396 QGKRPIMGKIALDLAD 411
           +GKRP+MGKIA  LAD
Sbjct: 243 KGKRPLMGKIAETLAD 258


>gi|294614320|ref|ZP_06694237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
 gi|291592792|gb|EFF24384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
          Length = 501

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 39  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 86  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + +S     G+TH+ +E SS      R+ G
Sbjct: 143 TALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +    + R
Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256

Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311
                 ++ ++ Y    +  +  ++     H    +  +  +++    +D L  L G F 
Sbjct: 257 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A       G  S    + L++  V PGR + +   S G  +YVDYAH   SL+ 
Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L+  +     GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  
Sbjct: 373 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432

Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++    D 
Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 492

Query: 487 DIIREIL 493
            I++ ++
Sbjct: 493 AIVKRLI 499


>gi|227554782|ref|ZP_03984829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
 gi|227176081|gb|EEI57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
          Length = 513

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 42  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEMPYE-------V 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 93  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG
Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|330832625|ref|YP_004401450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
 gi|329306848|gb|AEB81264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
          Length = 481

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 220/485 (45%), Gaps = 76/485 (15%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           W + + + +S DSR +    +F A  +   KE    F+ +AI  G    V    Y +   
Sbjct: 30  WTDVQFDALSYDSRTVSPTTLFFAKGLAFKKE----FLEKAIEAGLAFYVSEIDYEV--- 82

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139
                 + P ++V + ++ +SL A   +G HP+    +LA TGT GK++ A F   I ++
Sbjct: 83  ------DIPAIIVHDIKQAMSLIAMEFHG-HPQKQLKLLAFTGTKGKTTAAYFAFNILKQ 135

Query: 140 SGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           S   +      +T+   +F + + LTTP  + L   ++     G++H+ +E SS      
Sbjct: 136 SHKPAMLSTMNTTLDGKTFFK-STLTTPESLDLFAMMAEAVKNGMSHLIMEVSSQAYLVK 194

Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           R+ G+    G F N+  DHI    H T + YF  K      LL   S A+I         
Sbjct: 195 RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMDNSRAVIV-------- 241

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-- 313
                 NAG     V  +             ++ Q++ S  G DF     L G + +   
Sbjct: 242 ------NAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSA-GFDFTATGKLAGHYDIQLI 294

Query: 314 ------NALVAAGLCIAIGIDSALVLEHLEKLHV------VPGRFEFVGTNSRGGRIYVD 361
                 NA+ A   C+ +G         LE +H       VPGR E V T   G +++VD
Sbjct: 295 GGFNQENAIAAGLACLRLGAS-------LEDIHTGIAQTNVPGRME-VLTQQNGAKVFVD 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNP 420
           YAH  +S++ ++  +    +G++ ++ G  G++ + +R   G +  D   I  I+T D+P
Sbjct: 347 YAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADDP 406

Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIV 475
             EDP    E+IRA +      FI   +R EAIRTA+ +  + +D +++AGKG +   IV
Sbjct: 407 NREDPAAIAEQIRAHMTRP-SNFIL--DREEAIRTAMSQTSSTKDAVIIAGKGADAYQIV 463

Query: 476 TNGEK 480
            NGEK
Sbjct: 464 -NGEK 467


>gi|293568181|ref|ZP_06679515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|294619967|ref|ZP_06699339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|294622174|ref|ZP_06701242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
 gi|291589081|gb|EFF20895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|291593797|gb|EFF25299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|291598301|gb|EFF29392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
          Length = 501

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 39  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 86  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + +S     G+TH+ +E SS      R+ G
Sbjct: 143 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +    + R
Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256

Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311
                 ++ ++ Y    +  +  ++     H    +  +  +++    +D L  L G F 
Sbjct: 257 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A       G  S    + L++  V PGR + +   S G  +YVDYAH   SL+ 
Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L+  +     GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  
Sbjct: 373 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432

Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++    D 
Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 492

Query: 487 DIIREIL 493
            I++ ++
Sbjct: 493 AIVKRLI 499


>gi|227517630|ref|ZP_03947679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|312900256|ref|ZP_07759568.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|227074936|gb|EEI12899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|311292617|gb|EFQ71173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|315575296|gb|EFU87487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309B]
 gi|315581462|gb|EFU93653.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309A]
          Length = 513

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 45/467 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 42  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 93  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +
Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 486


>gi|257080909|ref|ZP_05575270.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
 gi|256988939|gb|EEU76241.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
          Length = 508

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|332522134|ref|ZP_08398386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313398|gb|EGJ26383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 485

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 231/488 (47%), Gaps = 51/488 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+F E+I + S +   +     +++S DSR      +F  + G    G  ++  A+ QG 
Sbjct: 15  KNFREVIAEDSYY-YHYTGLNFSKLSYDSRDADNQTLFF-VKGANFKGE-YLQSALNQGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125
           +A +    Y +           P ++V++ +  +S+ A   Y  +P++   +LA TGT G
Sbjct: 72  QAYISEVDYEV---------GIPAIIVNDIKHAMSIIAMAFY-DNPQDKLKLLAFTGTKG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ A F   I ++S  ++      +T+   +F + ++LTTP  + L K ++   S G+T
Sbjct: 122 KTTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFK-SQLTTPESLDLFKMMAECVSNGMT 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS      R+ G+    G F N+  DHI    H   + YF  K      LL + 
Sbjct: 181 HLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPNFEDYFYHK-----RLLMEN 235

Query: 242 SPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           S A+I   D        ++V K+ H+             F       +I + Q  T    
Sbjct: 236 SRAVIINSDMDHFHILKEQVAKQDHD-------------FYGQASDNSITDSQAFTFKAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   ++   L G F   NA+ A   C+ +G     + + + +   VPGR E V  +  G
Sbjct: 283 GKLAGNYRTLLIGRFNQENAIAAGLACLRLGASHEDIQKGIAQT-TVPGRME-VLNHPCG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +++VDYAH  +SLE ++  +     G+I ++ G  G++ + +R    K+  +  +++++
Sbjct: 341 AKVFVDYAHNGDSLEKLVSVVEEHQKGQITLIIGSTGNKGESRRADFAKVINNHPNLSVI 400

Query: 416 -TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETV 472
            T D+P  EDP+ I  EI   +   +  +  R +AI+  ++    ++D L++AGKG +  
Sbjct: 401 LTADDPNFEDPQTISEEIASYVSRQLTIEVEREQAIKLGLQSCQEEEDALIIAGKGADAY 460

Query: 473 HIVTNGEK 480
            IV NG+K
Sbjct: 461 QIV-NGQK 467


>gi|257886353|ref|ZP_05666006.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|261207201|ref|ZP_05921890.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
 gi|257822209|gb|EEV49339.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|260078829|gb|EEW66531.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
          Length = 509

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 47  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 94  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + +S     G+TH+ +E SS      R+ G
Sbjct: 151 TALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 210

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +    + R
Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 264

Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311
                 ++ ++ Y    +  +  ++     H    +  +  +++    +D L  L G F 
Sbjct: 265 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 322

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A       G  S    + L++  V PGR + +   S G  +YVDYAH   SL+ 
Sbjct: 323 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 380

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L+  +     GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  
Sbjct: 381 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 440

Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++    D 
Sbjct: 441 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 500

Query: 487 DIIREIL 493
            I++ ++
Sbjct: 501 AIVKRLI 507


>gi|315166876|gb|EFU10893.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1341]
          Length = 516

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG
Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|148545136|ref|YP_001272506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184154468|ref|YP_001842809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227364299|ref|ZP_03848392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|325683498|ref|ZP_08163014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
 gi|167017294|sp|A5VMU5|MURE_LACRD RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148532170|gb|ABQ84169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           DSM 20016]
 gi|183225812|dbj|BAG26329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227070612|gb|EEI08942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|324977848|gb|EGC14799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 516

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 145/508 (28%), Positives = 233/508 (45%), Gaps = 75/508 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSATIRS 88
           VS DSR +++G +F    GN      F+P+ +A    +GA A V    Y   +       
Sbjct: 32  VSYDSRKVKSGTLFFC-KGN------FLPKYLASAKEKGAIAYVAEKEYPEGE------- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P ++V++ +K +SL  +  YG +P+N   I+A+TGT GK++ A F   I  +S  ++ 
Sbjct: 78  GLPAIIVNDEQKAMSLLGAAFYG-YPQNDLFIIAITGTKGKTTTAYFADHILAQS--TAD 134

Query: 146 QIGPTSTIS---------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            I   ST+           F  D  LTTP  + L   +      G+TH+ +E SS    +
Sbjct: 135 HIALFSTLDRILGNKPEDKFKSD--LTTPESLDLFHDMRVAVDNGMTHLVMEVSSQAYKK 192

Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----- 249
           +R+ G+K   G F N+  DHI  + H T   Y + K    E+LL   +  +I A+     
Sbjct: 193 NRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSAKCLINAETEKFT 248

Query: 250 DAY--------SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298
           D Y         +++   A       L    Q  F +   +  +H  +    ++  K   
Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308

Query: 299 ---DFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              D  +   +PG++   NA   ++A+GL  A   D+   L H+     + GR E + +N
Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVH----IRGRMEMINSN 364

Query: 353 SRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLA 410
           + G  IYVDYAH   SL+ +L  + R   +G++ VV G  GD+   +RP  GK +  +  
Sbjct: 365 THG-TIYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKALTEEQP 423

Query: 411 DIAIVTDDNPRSEDPEKIRAEII----HGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T D+P  EDP  I  EI     H     I+ + +R  AI+ AI+     D++V+A
Sbjct: 424 DEVILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSENDDIVVLA 483

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +    V   +     D  I R+ +
Sbjct: 484 GKGEDPYQKVNGEDVPYPTDVKIARDYI 511


>gi|328946898|gb|EGG41035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1087]
          Length = 481

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 139/464 (29%), Positives = 220/464 (47%), Gaps = 50/464 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR   A  +F   V  +     F+ +A+  G    +     S  DF   I    P+
Sbjct: 38  ISYDSREADASTLF--FVKGEAFKREFLEKAVTAGLRFYI-----SETDFQVGI----PV 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  +S   +     
Sbjct: 87  LLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALLSTM 145

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            +T+   +F + + LTTP  + L K ++   + G TH+ +E SS    + R+ G+    G
Sbjct: 146 NTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTFDVG 204

Query: 208 SFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            F N+  DHI    H T + YF  K      LL   S A+I        +++K       
Sbjct: 205 VFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDYFQIVKE------ 253

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLC 322
           +V S+  +  F        I + Q  +    GK    +D    L G F   NA+ A   C
Sbjct: 254 QVASL--EHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAGLAC 309

Query: 323 IAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           + +G      LE ++K      VPGR E V T   G +++VDYAH   SL  +L  ++  
Sbjct: 310 LRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVVQEH 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPG 438
             G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   I  
Sbjct: 365 QKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISY 424

Query: 439 FIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
            +EK  +R EAI+ A+ + +++ D +++AGKG +   IV  GEK
Sbjct: 425 PVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467


>gi|257415238|ref|ZP_05592232.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           AR01/DG]
 gi|257157066|gb|EEU87026.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           ARO1/DG]
          Length = 508

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|257883276|ref|ZP_05662929.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
 gi|257818934|gb|EEV46262.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
          Length = 509

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 47  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 94  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + +S     G+TH+ +E SS      R+ G
Sbjct: 151 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 210

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +    + R
Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 264

Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311
                 ++ ++ Y    +  +  ++     H    +  +  +++    +D L  L G F 
Sbjct: 265 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 322

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A       G  S    + L++  V PGR + +   S G  +YVDYAH   SL+ 
Sbjct: 323 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 380

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L+  +     GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  
Sbjct: 381 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 440

Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++    D 
Sbjct: 441 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 500

Query: 487 DIIREIL 493
            I++ ++
Sbjct: 501 AIVKRLI 507


>gi|229548608|ref|ZP_04437333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|312953043|ref|ZP_07771896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|229306239|gb|EEN72235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|310629072|gb|EFQ12355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|327534252|gb|AEA93086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis OG1RF]
          Length = 513

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 221/469 (47%), Gaps = 49/469 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 42  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 93  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440

Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +  +++G   EAI  A+ +     D +V+AGKG +
Sbjct: 441 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKGAD 486


>gi|327462062|gb|EGF08391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1057]
          Length = 481

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A+  G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGETFKKEFLEKAVTAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   + G TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I        +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDYFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + Q  +    GK    +D    L G F   NA+ A 
Sbjct: 254 ---QVASL--EHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +++VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   +EK  +R EAI+ A+ + +++ D +++AGKG +   IV  GEK
Sbjct: 422 ISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467


>gi|29375267|ref|NP_814420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis V583]
 gi|257077542|ref|ZP_05571903.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294780452|ref|ZP_06745817.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
 gi|46576998|sp|Q838A4|MURE_ENTFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29342726|gb|AAO80491.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Enterococcus faecalis V583]
 gi|256985572|gb|EEU72874.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294452451|gb|EFG20888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
          Length = 508

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|257900334|ref|ZP_05679987.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
 gi|257838246|gb|EEV63320.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
          Length = 509

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 138/489 (28%), Positives = 229/489 (46%), Gaps = 55/489 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 47  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 94  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + ++     G+TH+ +E SS      R+ G
Sbjct: 151 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVYG 210

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +  +++K 
Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYF--DLLKE 265

Query: 260 AHNAGCRVLSVGY------QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGE 309
             +   ++ ++ Y        + IH  K    H    + +Q  +++    +D L  L G 
Sbjct: 266 TADL-FQIPTITYGRSEKSNYQVIHSDK--GTHGFTLSSRQDHLAICDTAYDIL--LAGG 320

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NA  A       G  S      L++  V PGR + +   S G  +YVDYAH   SL
Sbjct: 321 FNQENAASAIIAAALTGASSQDAQAGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSL 378

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           + +L+  +     GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI
Sbjct: 379 KTLLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKI 438

Query: 429 RAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++    
Sbjct: 439 AEEINEAITNPELIVHYEMDRPEAIRRALAESTSQDSVVIAGKGVDPYQKINGVDEPYEG 498

Query: 485 DCDIIREIL 493
           D  I++ ++
Sbjct: 499 DYAIVKRLI 507


>gi|158834068|gb|ABW81839.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 127/256 (49%), Gaps = 7/256 (2%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N+ TT S I + + LS + +   T  ++E SSH L QHR+  +   A  FTNLGRDH+DY
Sbjct: 6   NQNTTASAIEVQQILSNMLAHKATFAAMEVSSHALVQHRVAALTFAATVFTNLGRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275
           H     Y  AK  LF     K+   II  DD   +  + +  NA        +  G+QG 
Sbjct: 66  HGDMVTYEAAKKSLFFGHESKKH--IINVDDEVGQRWLPQLPNAVAVSTAHHIPSGWQGA 123

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++  +K+    N   +         +    L G F V N L+     +A+      +L+ 
Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELQSQLLGAFNVNNILLTLATLLALKYPLDALLKA 183

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD
Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242

Query: 396 QGKRPIMGKIALDLAD 411
           +GKRP+MGKIA  LAD
Sbjct: 243 KGKRPLMGKIAETLAD 258


>gi|315025677|gb|EFT37609.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2137]
 gi|315153888|gb|EFT97904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0031]
 gi|315156686|gb|EFU00703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0043]
          Length = 516

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 220/467 (47%), Gaps = 49/467 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443

Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   +P +  +++G   EAI  A+ +     D +V+AGKG
Sbjct: 444 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKG 487


>gi|307278242|ref|ZP_07559321.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
 gi|306504993|gb|EFM74184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
          Length = 516

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 267 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG
Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|256854472|ref|ZP_05559836.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|257089097|ref|ZP_05583458.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
 gi|256710032|gb|EEU25076.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|256997909|gb|EEU84429.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
          Length = 506

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 227/490 (46%), Gaps = 45/490 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  +
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 494

Query: 484 VDCDIIREIL 493
            D  + + I+
Sbjct: 495 GDFALAKMII 504


>gi|255973740|ref|ZP_05424326.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
 gi|255966612|gb|EET97234.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
          Length = 480

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 45/467 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 9   QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 59

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 60  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 117

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 118 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 175

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 176 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 231 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 290 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 347

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 348 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 407

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +
Sbjct: 408 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 453


>gi|227550279|ref|ZP_03980328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|293379063|ref|ZP_06625216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
 gi|227180580|gb|EEI61552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|292642342|gb|EFF60499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
          Length = 501

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 230/490 (46%), Gaps = 57/490 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 39  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 86  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + ++     G+TH+ +E SS      R+ G
Sbjct: 143 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVYG 202

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +  +++K 
Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYF--DLLKE 257

Query: 260 AHNAGCRVLSVGY------QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGE 309
             +   ++ ++ Y        + IH  K    H    + +Q  +++    +D L  L G 
Sbjct: 258 TADL-FQIPTITYGRSEESNYQVIHSDK--GTHGFTLSSRQDHLAICDTAYDIL--LAGG 312

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTSNS 368
           F   NA  A       G  S      L++  V PGR  + + TN  G  +YVDYAH   S
Sbjct: 313 FNQENAASAIIAAALTGASSQDAQAGLKEARV-PGRMDQLIQTN--GAHVYVDYAHNYLS 369

Query: 369 LEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           L+ +L+  +     GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+K
Sbjct: 370 LKTLLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQK 429

Query: 428 IRAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++   
Sbjct: 430 IAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYE 489

Query: 484 VDCDIIREIL 493
            D  I++ ++
Sbjct: 490 GDYAIVKRLI 499


>gi|257889005|ref|ZP_05668658.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257897600|ref|ZP_05677253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
 gi|257825068|gb|EEV51991.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257834165|gb|EEV60586.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
          Length = 509

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 230/490 (46%), Gaps = 57/490 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 47  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 94  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + ++     G+TH+ +E SS      R+ G
Sbjct: 151 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVYG 210

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +  +++K 
Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYF--DLLKE 265

Query: 260 AHNAGCRVLSVGY------QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGE 309
             +   ++ ++ Y        + IH  K    H    + +Q  +++    +D L  L G 
Sbjct: 266 TADL-FQIPTITYGRSEESNYQVIHSDK--GTHGFTLSSRQDHLAICDTAYDIL--LAGG 320

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTSNS 368
           F   NA  A       G  S      L++  V PGR  + + TN  G  +YVDYAH   S
Sbjct: 321 FNQENAASAIIAAALTGASSQDAQAGLKEARV-PGRMDQLIQTN--GAHVYVDYAHNYLS 377

Query: 369 LEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           L+ +L+  +     GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+K
Sbjct: 378 LKTLLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQK 437

Query: 428 IRAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++   
Sbjct: 438 IAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYE 497

Query: 484 VDCDIIREIL 493
            D  I++ ++
Sbjct: 498 GDYAIVKRLI 507


>gi|293572002|ref|ZP_06683015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
 gi|291607926|gb|EFF37235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
          Length = 501

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 138/489 (28%), Positives = 229/489 (46%), Gaps = 55/489 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 39  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 86  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + ++     G+TH+ +E SS      R+ G
Sbjct: 143 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVKNGMTHLVMEVSSQAYKTQRVYG 202

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +  +++K 
Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYF--DLLKE 257

Query: 260 AHNAGCRVLSVGY------QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGE 309
             +   ++ ++ Y        + IH  K    H    + +Q  +++    +D L  L G 
Sbjct: 258 TADL-FQIPTITYGRSEESNYQVIHSDK--GTHGFTLSSRQDHLAICDTAYDIL--LAGG 312

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NA  A       G  S      L++  V PGR + +   S G  +YVDYAH   SL
Sbjct: 313 FNQENAASAIIAAALTGASSQDAQAGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSL 370

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           + +L+  +     GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI
Sbjct: 371 KTLLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKI 430

Query: 429 RAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI   I  P  I   + +R EAIR A+     QD +V+AGKG +    +   ++    
Sbjct: 431 AEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEG 490

Query: 485 DCDIIREIL 493
           D  I++ ++
Sbjct: 491 DYAIVKRLI 499


>gi|257086023|ref|ZP_05580384.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257420926|ref|ZP_05597916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
 gi|256994053|gb|EEU81355.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257162750|gb|EEU92710.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
          Length = 508

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 220/467 (47%), Gaps = 49/467 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   +P +  +++G   EAI  A+ +     D +V+AGKG
Sbjct: 436 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKG 479


>gi|229546496|ref|ZP_04435221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|307289939|ref|ZP_07569868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
 gi|229308396|gb|EEN74383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|306499005|gb|EFM68494.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
          Length = 511

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 227/490 (46%), Gaps = 45/490 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 42  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 93  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A++T D+P SEDP K 
Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 440

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  +
Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 499

Query: 484 VDCDIIREIL 493
            D  + + I+
Sbjct: 500 GDFALAKMII 509


>gi|323479850|gb|ADX79289.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Enterococcus faecalis 62]
          Length = 506

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 227/490 (46%), Gaps = 45/490 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  +
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 494

Query: 484 VDCDIIREIL 493
            D  + + I+
Sbjct: 495 GDFALAKMII 504


>gi|315031426|gb|EFT43358.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0017]
          Length = 516

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 220/467 (47%), Gaps = 49/467 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 267 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443

Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I+A I   +P +  +++G   EAI  A+ +     D +V+AGKG
Sbjct: 444 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKG 487


>gi|217963816|ref|YP_002349494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333086|gb|ACK38880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 196

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 98/173 (56%), Gaps = 4/173 (2%)

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F VYN L A     A+ I     +  LE +  V GRFE V    +   + VDYAHT +
Sbjct: 3   GNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNA-GQAFPVIVDYAHTPD 61

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D +   I T DNPRSE+P  
Sbjct: 62  GLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNPIFTSDNPRSENPHA 121

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE   ++ +
Sbjct: 122 IIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD 174


>gi|324993698|gb|EGC25617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK405]
 gi|324994989|gb|EGC26902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK678]
 gi|327462968|gb|EGF09289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1]
 gi|327474571|gb|EGF19976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK408]
          Length = 481

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 221/467 (47%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A++ G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  Q   +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQTLSQSHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   +   TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANNRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I   D    +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSDMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + Q  +  V GK    +D    L G F   NA+ A 
Sbjct: 254 ---QVASM--EHDFYGAGSSNTIIDSQAFSFEVAGKLAGRYDI--QLIGHFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +++VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   +EK  +R EAI+ A+ + +++ D +++AGKG +   I+  GEK
Sbjct: 422 ISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQII-EGEK 467


>gi|256617550|ref|ZP_05474396.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
 gi|256597077|gb|EEU16253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
          Length = 508

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ +   +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 481


>gi|307277046|ref|ZP_07558152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|312904314|ref|ZP_07763476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|306506290|gb|EFM75454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|310632410|gb|EFQ15693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|315030594|gb|EFT42526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4000]
 gi|315159715|gb|EFU03732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0312]
 gi|315162688|gb|EFU06705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0645]
 gi|315578755|gb|EFU90946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0630]
          Length = 514

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 227/490 (46%), Gaps = 45/490 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A++T D+P SEDP K 
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 443

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  +
Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 502

Query: 484 VDCDIIREIL 493
            D  + + I+
Sbjct: 503 GDFALAKMII 512


>gi|154496371|ref|ZP_02035067.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
 gi|150274454|gb|EDN01531.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
          Length = 507

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 136/486 (27%), Positives = 222/486 (45%), Gaps = 39/486 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE--AIVVSSAYSLQDFSAT 85
           R++  VS DS+ +  G +F+        G  F PQ +   AE  A V  S     + +  
Sbjct: 36  REVRLVSCDSQTVVPGTLFIC------KGAAFKPQYLLDAAEKGAFVYVSERRWPECA-- 87

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R+ ++L A R +  HP   L    +TGT GK++ A F++ +      
Sbjct: 88  ----LPCILVSDIRRSMALLADRAW-NHPSGRLHITGITGTKGKTTTAYFLKSMLDEWRR 142

Query: 143 SSFQIGPTSTISSFAQDN-------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           S  +   ++ +S+   D+       +LTTP P+ L + L   +  G  ++++E SS  L 
Sbjct: 143 SQGK-RESAILSTMITDDGVERRPAKLTTPEPLDLQRHLWNAAECGAEYLTMEVSSQALK 201

Query: 196 QHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            HR  G++   G F N+G DHI    H   + YF +K+ +F +     + A +  D  ++
Sbjct: 202 YHRTGGVEFSVGVFLNIGEDHISPVEHPDFEDYFASKLMIFRQ----SAAACVNLDSDFA 257

Query: 254 KEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           + ++  A +       S  +    I+  ++    +  +  +       +    LPG F V
Sbjct: 258 ERILTAAESCSKIYTFSTKFSTADIYASEIRRDGDATRFLVRTPRYTRELSMGLPGSFNV 317

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A     A+G+  + V   L +   VPGR E   T      + VDYAH   SLE +
Sbjct: 318 ENALAAVAAAEALGVPESAVAAGLAEA-TVPGRMETFNTPDGKLTVIVDYAHNGMSLEAL 376

Query: 373 LKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           L ++R    GR + V+FGC G +   +R  MG+ A   AD  I+T+D+P  E+   I A+
Sbjct: 377 LSSVRREFPGRQLTVLFGCTGGKGLDRREGMGQAAGRWADRIILTEDDPGPEEVPDICAD 436

Query: 432 IIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           I   I  F +      +R EA+  AI   +   V+V+AGKG E      NG +    D  
Sbjct: 437 IGGYIAPFGKTWTVIPDREEAVERAILEAHTPAVVVLAGKGAEQQQKRKNGPEPCVPDSL 496

Query: 488 IIREIL 493
           + R  L
Sbjct: 497 LARRAL 502


>gi|158834096|gb|ABW81853.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 125/256 (48%), Gaps = 7/256 (2%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N  TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275
           H     Y  AK  LF +   K    II  DD   +  +    NA        +  G QG 
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGA 123

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++  +K+    N   +  +      +   PL G F V N L+     +A+      +L+ 
Sbjct: 124 WLSAQKIQYHENGAFIFFNSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD
Sbjct: 184 ASKLQAIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242

Query: 396 QGKRPIMGKIALDLAD 411
           +GKRP+MGKIA  LAD
Sbjct: 243 KGKRPLMGKIAETLAD 258


>gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 317

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 154/325 (47%), Gaps = 21/325 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 4   FNLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 61  -AYEVEGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 119

Query: 133 VQQ----ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V Q    + QR G+    +G   T      Q  R TTP PI +   L+ L   G   V++
Sbjct: 120 VAQALDVLGQRCGI----VGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAM 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I 
Sbjct: 176 EVSSHGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSDLKCRVIN 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306
            DD + +E+      +     S      +++ +      +  + T ++ +G+ F     L
Sbjct: 234 LDDDFGRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSL 292

Query: 307 PGEFQVYNALVAAGLCIAIGIDSAL 331
            G F + N L A G    +G+D AL
Sbjct: 293 LGRFNLSNVLAAVGAL--LGLDYAL 315


>gi|325687075|gb|EGD29098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK72]
          Length = 481

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 219/467 (46%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A+  G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVTAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   +   TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLELIKMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I        +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + Q  +    GK   ++D    L G F   NA+ A 
Sbjct: 254 ---QVASL--EHDFYGADSSNTIKDSQAFSFEATGKLAGNYDI--QLIGRFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +++VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLRNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   +EK  +R EAI+ A+ +  ++ D +++AGKG +   IV  GEK
Sbjct: 422 ISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIV-EGEK 467


>gi|256761439|ref|ZP_05502019.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
 gi|256682690|gb|EEU22385.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
          Length = 480

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 9   QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 59

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 60  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 117

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 118 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 175

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 176 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ +   +   VE      G    +   L G+
Sbjct: 231 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 290 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 347

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 348 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 407

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +
Sbjct: 408 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 453


>gi|327490129|gb|EGF21917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1058]
 gi|332367212|gb|EGJ44947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1059]
          Length = 481

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 221/467 (47%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A++ G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  Q   +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQTLSQSHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   +   TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANNRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I   D    +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSDMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + Q  +  V GK    +D    L G F   NA+ A 
Sbjct: 254 ---QVASM--EHDFYGAGSSNTIIDSQAFSFEVAGKLAGRYDI--QLIGHFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +++VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   +EK  +R EAI+ A+ + +++ D +++AGKG +   I+  GEK
Sbjct: 422 ISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQII-EGEK 467


>gi|158834056|gb|ABW81833.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834058|gb|ABW81834.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834060|gb|ABW81835.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834062|gb|ABW81836.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834064|gb|ABW81837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834072|gb|ABW81841.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834088|gb|ABW81849.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834090|gb|ABW81850.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834092|gb|ABW81851.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834098|gb|ABW81854.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834100|gb|ABW81855.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 125/256 (48%), Gaps = 7/256 (2%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N+ TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NQNTTASAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275
           H     Y  AK  LF +   K    II  DD   +  +    NA        +  G QG 
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGA 123

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++  +K+    N   +         +   PL G F V N L+     +A+      +L+ 
Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD
Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242

Query: 396 QGKRPIMGKIALDLAD 411
           +GKRP+MGKIA  LAD
Sbjct: 243 KGKRPLMGKIAETLAD 258


>gi|125718538|ref|YP_001035671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus sanguinis SK36]
 gi|166224790|sp|A3CPL6|MURE_STRSV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|125498455|gb|ABN45121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
           putative [Streptococcus sanguinis SK36]
          Length = 481

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A++ G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSVGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFTYQILSQSHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   +   TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I        +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + Q  +    GK   ++D    L G F   NA+ A 
Sbjct: 254 ---QVASL--EHDFYGADSSNTIKDSQAFSFEATGKLAGNYDI--QLIGRFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +++VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLRNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   +EK  +R EAI+ A+ +  ++ D +++AGKG +   IV  GEK
Sbjct: 422 ISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIV-EGEK 467


>gi|289566694|ref|ZP_06447110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
 gi|289161511|gb|EFD09395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
          Length = 485

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 216/462 (46%), Gaps = 51/462 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++S DSR   A  +F     N KE+   ++  AI QG +  V    Y           N+
Sbjct: 39  QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85

Query: 91  PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146
            + ++V + RK ++L A   Y  +P+N L V   TGT GK++ A F + I   +  ++ +
Sbjct: 86  AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142

Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ST+++         + LTTP  + L + +S     G+TH+ +E SS      R+ G
Sbjct: 143 TALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L  G F N+  DHI    H T   YF  K +L   +L  ++  + +  D +    + R
Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256

Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311
                 ++ ++ Y    +  +  ++     H    +  +  +++    +D L  L G F 
Sbjct: 257 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A       G  S    + L++  V PGR + +   S G  +YVDYAH   SL+ 
Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L+  +     GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  
Sbjct: 373 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432

Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           EI   I  P  I   + +R EAIR A+     QD +V+AGKG
Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|332362287|gb|EGJ40087.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1056]
          Length = 481

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 221/467 (47%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A++ G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  ++   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQNHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   + G TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I  +     +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNNGMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + Q  +    GK    +D    L G F   NA+ A 
Sbjct: 254 ---QVASM--EHDFYGAGSSNTIIDSQAFSFEAAGKLAGRYDI--QLIGRFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +I+VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   +EK  +R EAI+ A+ +  ++ D +++AGKG +   IV  GEK
Sbjct: 422 ISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIV-EGEK 467


>gi|307289639|ref|ZP_07569583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|306499453|gb|EFM68826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|315166172|gb|EFU10189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1302]
          Length = 516

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGITAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A++T D+P SEDP K 
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 443

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +
Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 489


>gi|315146886|gb|EFT90902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4244]
          Length = 516

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 220/469 (46%), Gaps = 49/469 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ +   +   VE      G    +   L G+
Sbjct: 267 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443

Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +  +++G   EAI  A+ +     D +V+AGKG +
Sbjct: 444 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKGAD 489


>gi|257062775|ref|YP_003142447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
 gi|256790428|gb|ACV21098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
          Length = 493

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 134/498 (26%), Positives = 222/498 (44%), Gaps = 55/498 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ--AIAQGAEAIVVSSAYSLQDFSA 84
           E  +  ++ DSR  + G +FV        G  F PQ    A  A A       + +   A
Sbjct: 14  EATVQGMTIDSRKAEPGCLFVC------KGAAFKPQYLGGALDAGAAAYLCDAAAEATLA 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSG 141
                 P +V D+ R+ ++L A+ ++ + P+   +++ +TGT GKS+ A  ++ I   +G
Sbjct: 68  QAYPQAPHIVTDDVRRAMALLAAVVFDR-PDLKIDVVGITGTKGKSTTAYMMRSILIAAG 126

Query: 142 LSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                +G   T   +  F   N  TTP    L + L+     G + + +E SSHGL   R
Sbjct: 127 QEPSILGSIDTDDGVEHFESHN--TTPEAPDLWRHLANTVEAGRSRMVMEVSSHGLKYDR 184

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             G++   G F N+GRDHI    H T + YF +K++LF     +   A++  +   + +V
Sbjct: 185 TLGVRFAIGCFLNIGRDHISPVEHPTFEDYFESKLKLF----AQSRTALVNLNSDMADQV 240

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------L 306
           ++ A  A  ++++ G       + +  A  N   + +  +G  F    P          +
Sbjct: 241 LE-AAKASEQLVTFG-------VGRDDADWNAADLAVEPQGIAFTVCTPTGERERIVLGM 292

Query: 307 PGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            G F V NAL A  +   +G+   D    L H+     VPGR E V +        VDYA
Sbjct: 293 AGLFNVENALAAVVMSRMLGVTWDDIRAGLAHVR----VPGRMEVVRSADGSVVALVDYA 348

Query: 364 HTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H   S +    +++    GR +I VFG  G++ Q +R  + ++A   AD  I T+++P  
Sbjct: 349 HNELSFKTFFSSVKEEYPGRKVIAVFGAPGNKAQERRVTLPRVAAGFADHMIFTEEDPAY 408

Query: 423 EDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVT 476
           E  E I AE++   P         +R  A + A +M  + +   V+ +  KG ET     
Sbjct: 409 ERVEDICAEMMASTPAGASAEVICDREAACKRAFDMAFEAENGAVVALLAKGDETRQHRG 468

Query: 477 NGEKKMSVDCDIIREILG 494
           +   ++  D  I REILG
Sbjct: 469 DEFPEVKSDLAIAREILG 486


>gi|225857155|ref|YP_002738666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae P1031]
 gi|225724415|gb|ACO20267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae P1031]
          Length = 481

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 230/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHSSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 315

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 151/321 (47%), Gaps = 13/321 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
            N   IF    R+  I E++  SR+++ G +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   FNLSKIFAHTDRDPLIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R   +    G  TNL RDH+DYH T +AY  AK +LF          +I  DDA
Sbjct: 179 HGLDQGRATALAFDVGVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310
           + +E+      +     S      +++ +      +  + T ++ +G+ F     L G F
Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295

Query: 311 QVYNALVAAGLCIAIGIDSAL 331
            + N L A G    +G+D AL
Sbjct: 296 NLSNVLSAVGAL--LGLDYAL 314


>gi|158834066|gb|ABW81838.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 124/256 (48%), Gaps = 7/256 (2%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N  TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275
           H     Y  AK  LF +   K    II  DD   +  +    NA        +  G QG 
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGA 123

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++  +K+    N   +         +   PL G F V N L+     +A+      +L+ 
Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD
Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242

Query: 396 QGKRPIMGKIALDLAD 411
           +GKRP+MGKIA  LAD
Sbjct: 243 KGKRPLMGKIAETLAD 258


>gi|315149406|gb|EFT93422.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0012]
          Length = 513

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 218/465 (46%), Gaps = 45/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 42  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 93  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           + +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A++T D+P SEDP   
Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAEI 440

Query: 426 -EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
            ++I+A I   +P +    +R EAI  A+ +     D +V+AGKG
Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|94269093|ref|ZP_01291368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [delta proteobacterium MLMS-1]
 gi|93451353|gb|EAT02221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [delta proteobacterium MLMS-1]
          Length = 326

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 147/297 (49%), Gaps = 53/297 (17%)

Query: 225 AYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHN-AGC----------------- 265
           +YF AK RLFE+ L P  +  +  A+ A + +  KRA + AGC                 
Sbjct: 1   SYFAAKKRLFEQHLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLR 60

Query: 266 -----------RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                      R+   G+    + L    +  N  +  ++    +++   PL G+F + N
Sbjct: 61  LCGQTAAGRAPRLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLN 120

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMIL 373
            L  A   +A+ +    +   L      PGR E FV  + RG +++VDYAHT  +LE +L
Sbjct: 121 LLGVAATGLALEMSPEAIAAALAVAPPPPGRLERFV--DRRGMKVFVDYAHTPAALEQVL 178

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R   S R+IV+FGCGGDRD+GKR  MG+IA  LADI ++T DNPR+E+P  I A I 
Sbjct: 179 RTLRP-HSRRLIVIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILATIE 237

Query: 434 HGIPGFIEKGNRIEAI-----RTAIEML--------------NKQDVLVVAGKGHET 471
            G+ G   +  R+EA+     R   ++L              +  DV+V+ GKGHET
Sbjct: 238 AGVKGTGLQRCRLEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHET 294


>gi|332199575|gb|EGJ13650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 481

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 142/510 (27%), Positives = 235/510 (46%), Gaps = 58/510 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K  L E 
Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME- 234

Query: 237 LLPKESPAIIYAD-DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                   II +D D +S   ++V  + H+         Y  +F +      I N +  +
Sbjct: 235 ---NSRAVIINSDMDHFSVLREQVEDQDHDF--------YGSQFDN-----QIENSKAFS 278

Query: 293 ISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRF 346
            S  GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR 
Sbjct: 279 FSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRM 332

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G + 
Sbjct: 333 E-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLL 391

Query: 407 LDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLV 463
               +I + +T D+P  EDP  I  EI + I   +EK  +R EAI+ A+ + N + D ++
Sbjct: 392 NQHPEIQVFLTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVI 451

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKG +   I+   ++    D  +    L
Sbjct: 452 IAGKGADCYQIIQGKKESYPGDTAVAENYL 481


>gi|329576940|gb|EGG58423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TX1467]
          Length = 511

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 226/491 (46%), Gaps = 47/491 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 42  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I     ++
Sbjct: 93  PAQLGIIVTD-IKKAMAVLSIAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILD---VA 147

Query: 144 SFQIGPTSTISSFAQDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + QI    +  +   D +      LTTP  + L + ++   + G+TH  +E SS     +
Sbjct: 148 TQQITALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTN 207

Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSK 254
           R+  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y  
Sbjct: 208 RVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFP 262

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPG 308
            + + A       +  G Q     +    A+ ++  +   VE      G    +   L G
Sbjct: 263 LLKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGG 321

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +S
Sbjct: 322 DFNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDS 379

Query: 369 LEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           L+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K
Sbjct: 380 LKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439

Query: 428 ----IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKM 482
               I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  
Sbjct: 440 ICQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPY 498

Query: 483 SVDCDIIREIL 493
           + D  + + I+
Sbjct: 499 AGDFALAKMII 509


>gi|315173998|gb|EFU18015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1346]
          Length = 516

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 217/465 (46%), Gaps = 45/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 45  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 96  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 267 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP KI
Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443

Query: 429 RAE----IIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
             E    I   +P +    +R EAI  A+ +     D +V+AGKG
Sbjct: 444 CQEIQTHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|15903427|ref|NP_358977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae R6]
 gi|116516282|ref|YP_816820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|149021803|ref|ZP_01835810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|46577039|sp|Q8CWQ5|MURE_STRR6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122278334|sp|Q04JL8|MURE_STRP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15459034|gb|AAL00188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine Ligase
           [Streptococcus pneumoniae R6]
 gi|116076858|gb|ABJ54578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|147930039|gb|EDK81026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|301794540|emb|CBW36983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV104]
 gi|332074284|gb|EGI84761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 481

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 230/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|256964548|ref|ZP_05568719.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
 gi|256955044|gb|EEU71676.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
          Length = 508

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKVGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ +   +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIIYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 481


>gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 501

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 218/474 (45%), Gaps = 57/474 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+SDSR ++ G+IFVAI G KEDG+ FI +A+ +GA  I   +   ++D    I  
Sbjct: 7   EIKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIKD---CIVK 63

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145
             P     + RK L    ++ YG +P + L V G +G +   +    +  I + SG  + 
Sbjct: 64  KVP-----DCRKELGNLCNQFYG-YPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAG 117

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     I +    ++LTTP    +   L+ +  +GVT   +E SSHGL  +R+ GI  
Sbjct: 118 LIGTLFIKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNRVHGIDF 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-------SKEVM 257
                TN+  DH+++H+    Y N+K +LF+  L +   A+I  DD Y        KE++
Sbjct: 178 DIAIHTNINWDHLNFHKNINDYVNSKKKLFDS-LSEGKVALINHDDQYGIKMLEGKKEIL 236

Query: 258 KRAHNAGCR------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFP----L 306
              +    +       +  G+   F +    C     Q+   ++EG + + F +P    L
Sbjct: 237 AITYGLSSKSTVTASSIDFGFTTSFTY----CL----QRGITTLEGVEIEAFEYPVTSNL 288

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   +YNAL+A   C+ + I    +++ ++    V  R + +  +     +  DY H  
Sbjct: 289 IGNHNIYNALLAISTCLLLNIPIDKIVQSIKNYPAVQRRMQIIYRDKF--TVIDDYCHNP 346

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIA--IVTDD--- 418
           +S E +   I+ +    + +V G  G+R      K   + K   D+ +I   ++TD    
Sbjct: 347 SSYEAVFNAIQNLQYNNLHIVNGIRGNRGVHINKKNAEVLKQWYDILNIKKLVITDSTDF 406

Query: 419 ----NPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               N   E+ + I  E+ +   IP   E+  R +AI   I  L + D+L++ G
Sbjct: 407 IDPMNSALEEEKNICFEVFNSSAIPFQYERNLR-DAIEEGIRDLRQGDILLLLG 459


>gi|307272480|ref|ZP_07553733.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
 gi|306510765|gb|EFM79782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
          Length = 513

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 42  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKVGLEIYVSEVPYE-------V 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 93  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ +   +   VE      G    +   L G+
Sbjct: 264 LKETAQQQKVPAIIYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 322

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +
Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 486


>gi|331701599|ref|YP_004398558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329128942|gb|AEB73495.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 511

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 130/500 (26%), Positives = 227/500 (45%), Gaps = 58/500 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            +++S +S+ +    +F    GN +  +L    A   GA A +    Y          + 
Sbjct: 31  FDQISYNSKSVTDNCLFFC-KGNFKSAYL--DDARQNGATAYMSEKTYQ--------NAG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P ++V N +K +SL ++  +G  P++ L   A TGT GK++ A F + I  ++     +
Sbjct: 80  IPGIIVKNIQKAMSLVSAAFFG-FPQDQLPTIAYTGTKGKTTSAYFTKAILDQT--YQRK 136

Query: 147 IGPTSTISSFA----QD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +STI++      +D   + LTTP  + L   +   +  G++H+ +E SS    ++R+
Sbjct: 137 VALSSTINTVVGLKPEDVVKSNLTTPESLDLFTMMRKAADNGMSHLVMEVSSQAYKKNRV 196

Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            G+    G F N+  DHI  + H T   Y + K    E+LL      ++ AD  +  ++ 
Sbjct: 197 YGLHYDVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSDVCVLNADGTHLTDIF 252

Query: 258 --KRAHNAGCRVLSVGYQGKFIHLK----------KVCAIHNKQQVTI-SVEGKDFD--- 301
              +A      +   G  G+    +          K     N+ QVT  + + K  +   
Sbjct: 253 YAAKATTQPENIFIYGRAGQNQETEFPVDVEYRSLKDSLTENQIQVTARTAKAKQLNIDG 312

Query: 302 -FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +   +PG++   NA+ AA     +G     +   L     VPGR E   T+  G  +YV
Sbjct: 313 VYRIGIPGDYNEGNAVAAAITSALMGAKPTEIAYGLANT-TVPGRMEIYQTHDHG-TVYV 370

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH   SL  +L  ++    +G++ V+ G  GD+   +R  +GK   + AD A +T D+
Sbjct: 371 DYAHNYGSLHSVLDFLKKQAPNGKVTVITGSTGDKGIDRREGLGKAINEAADQAYLTTDD 430

Query: 420 PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           P +EDP++I  EI   I        +I   +R +AI  A+    K D++VVAGKGH+   
Sbjct: 431 PATEDPQQIAKEIAAHIDTSKVATTYIP--DRKQAITKAVSESQKGDLVVVAGKGHDQYQ 488

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            +         D  I++ ++
Sbjct: 489 KINGKNVPYEGDAAIVKNLV 508


>gi|325696310|gb|EGD38201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK160]
          Length = 481

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 144/494 (29%), Positives = 229/494 (46%), Gaps = 53/494 (10%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F +++     F   +     + +S DSR   A  +F   V  +     F+ +
Sbjct: 9   DILKKDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLF--FVKGEAFKKEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILA 119
           A+  G    +     S  DF   I    P+L+V++ ++ +SL A   YG HPE    +LA
Sbjct: 66  AVTAGLRFYI-----SETDFQVGI----PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLA 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177
            TGT GK++ A F  QI  +S   +      +T+   +F + + LTTP  + L K ++  
Sbjct: 116 FTGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFK-STLTTPESLDLIKMMAQA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            +   TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K     
Sbjct: 175 LANDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNK----- 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LL   S A+I        +++K       +V S+  +  F        I + Q  +   
Sbjct: 230 RLLMDHSRAVIVNSGMDHFQIVKE------QVASM--EHDFYGAGSSNTITDSQAFSFEA 281

Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFV 349
            GK    +D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V
Sbjct: 282 AGKLAGHYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIATTRVPGRME-V 334

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T   G +I+VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +    
Sbjct: 335 LTQKNGAKIFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQH 394

Query: 410 ADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAG 466
            ++ ++ T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ +  ++ D +++AG
Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAG 454

Query: 467 KGHETVHIVTNGEK 480
           KG +   IV  GEK
Sbjct: 455 KGADAYQIV-EGEK 467


>gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 540

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 209/495 (42%), Gaps = 67/495 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR ++ G +F A+ G    G  +I  AI  GA AIV            T    
Sbjct: 26  VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLD------TYVVG 79

Query: 90  TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V + R  LS  A+  Y        ++ VTGT GKSS  SF+ Q+ +  G    ++
Sbjct: 80  VYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGK---RV 136

Query: 148 GPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RL 199
           G  ST+     D+ L      TTP  + + + L+ +         +EASSHGL     RL
Sbjct: 137 GFISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARL 196

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE---------SPAIIYADD 250
             +        N+  +H+++H + + Y   K  +F  L   +         S  +++A+D
Sbjct: 197 QDVAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAED 256

Query: 251 A---YSKEV-------MKRAHNA-----------GCRVLSVGYQGKFIH-LKKVCAIHNK 288
           A   Y +E         KR   A            C +L V    +    L+    +   
Sbjct: 257 ASAVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLWVQTLPQISQALRLRFVLSTV 316

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNA----LVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           Q+     +    D   PL G F   N     LV  GL   +G   A   +H++ +  + G
Sbjct: 317 QEPAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGL---LGTSLAAFAQHVQYVQPIQG 373

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPI 401
           R + V    +   + +DYAHT +S E IL  +      R   ++V+FG  G+RD  KR +
Sbjct: 374 RMQRVDMG-QDFEVLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAM 432

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEM 455
            G IA   A + ++TD++PR EDP  I   I  G              +R+ A+R    +
Sbjct: 433 QGAIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSL 492

Query: 456 LNKQDVLVVAGKGHE 470
              QD++++ GKGHE
Sbjct: 493 ARAQDLVLLLGKGHE 507


>gi|302336448|ref|YP_003801655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
 gi|301320288|gb|ADK68775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
          Length = 532

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 218/493 (44%), Gaps = 42/493 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSRH   G +FV   GN      ++ QA+A G    +   A + +   A      P 
Sbjct: 47  VDCDSRHAAPGHLFV-CKGNAFRAS-YLAQALAAGCVGYLCDEARAGE--LAAHCPQVPR 102

Query: 93  LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQ------RSGLS 143
           LV  + R+ ++L ++  +G HP+    +L +TGT GKS+VA  ++ I        R    
Sbjct: 103 LVSHDLRRAMALVSAEAWG-HPDRNLGVLGITGTKGKSTVAYMLRSILDSDADGTRGAPH 161

Query: 144 SFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G   T     ++  + TTP    L + L   ++ G++H+ +E SS  L   R+ G+
Sbjct: 162 TGILGSIETFDGIEREESVNTTPEAPDLWRHLHNAATSGLSHMVMEVSSQALKYDRVVGL 221

Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            L    F N+G DHI    H + + YF +K+R+F++       A++  D   +  +++RA
Sbjct: 222 GLDVACFLNIGCDHISPVEHPSFEDYFESKLRIFDQ----ACVAVVNLDSDKADVILERA 277

Query: 261 HNAGCRVLSVGYQGKF------------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              G R ++    G+             +  + + +   + Q+ +            +PG
Sbjct: 278 ARCG-RTVTFSATGQGAGGAPAGAGGADVWAEGISSREGRIQMMVRTPSWSEPVTVSMPG 336

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F   NAL A  +C A GI    V+  L ++  VPGR E + T        VDYAH   S
Sbjct: 337 LFNADNALAAIAICEACGIGRERVVAGLARVR-VPGRMELLPTADPKVTGIVDYAHNKLS 395

Query: 369 LEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    ++    +GR II V G  G +   +R  + + A   AD  I T+++P  +  E+
Sbjct: 396 YQRFFSSMAQEFAGRAIIAVLGAPGGKAYERRRELPQEASKWADYLIYTEEDPAGDPVEE 455

Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEML--NKQDVLV-VAGKGHETVHIVTNGEKK 481
           I +++    P    F    +R  AIR A+E+     Q  LV +  KG ET+  V N    
Sbjct: 456 ICSQLAAATPAGQDFEVIVDRPAAIRRAVELAFGYPQGALVCLLAKGDETLQHVGNSFVP 515

Query: 482 MSVDCDIIREILG 494
              D  +    +G
Sbjct: 516 CETDGTLFERAVG 528


>gi|315144496|gb|EFT88512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2141]
          Length = 511

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 226/490 (46%), Gaps = 45/490 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 42  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 93  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ +   +   V       G    +   L G+
Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSDDSLRFIVASPADALGLAGSYHLRLGGD 322

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  +
Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 499

Query: 484 VDCDIIREIL 493
            D  + + I+
Sbjct: 500 GDFALAKMII 509


>gi|300862275|ref|ZP_07108355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|300848800|gb|EFK76557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 506

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 226/490 (46%), Gaps = 45/490 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F     N ++  +++  A+  G E  V    Y        +
Sbjct: 37  QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
            +   I+V D  +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 88  PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ +   +   V       G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSDDSLRFIVASPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
           + +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP K 
Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I+A I   +P +    +R EAI  A+ +     D +V+AGKG +    V   ++  +
Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 494

Query: 484 VDCDIIREIL 493
            D  + + I+
Sbjct: 495 GDFALAKMII 504


>gi|158834082|gb|ABW81846.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 124/256 (48%), Gaps = 7/256 (2%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N  TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275
           H     Y  AK  LF +   K    II  DD   +  +    NA        +  G +G 
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGA 123

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++  +K+    N   +         +   PL G F V N L+     +A+      +L+ 
Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLNALLKA 183

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD
Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242

Query: 396 QGKRPIMGKIALDLAD 411
           +GKRP+MGKIA  LAD
Sbjct: 243 KGKRPLMGKIAETLAD 258


>gi|158834074|gb|ABW81842.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834076|gb|ABW81843.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834078|gb|ABW81844.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834080|gb|ABW81845.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834084|gb|ABW81847.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834086|gb|ABW81848.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834094|gb|ABW81852.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 124/256 (48%), Gaps = 7/256 (2%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N  TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275
           H     Y  AK  LF +   K    II  DD   +  +    NA        +  G +G 
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGA 123

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++  +K+    N   +         +   PL G F V N L+     +A+      +L+ 
Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD
Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242

Query: 396 QGKRPIMGKIALDLAD 411
           +GKRP+MGKIA  LAD
Sbjct: 243 KGKRPLMGKIAETLAD 258


>gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi]
          Length = 523

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 209/495 (42%), Gaps = 67/495 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR ++ G +F A+ G    G  +I  AI  GA AIV            T    
Sbjct: 26  VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLD------TYVVG 79

Query: 90  TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V + R  LS  A+  Y        ++ VTGT GKSS  SF+ Q+ +  G    ++
Sbjct: 80  VYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGK---RV 136

Query: 148 GPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RL 199
           G  ST+     D+ L      TTP  + + + L+ +         +EASSHGL     RL
Sbjct: 137 GFISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARL 196

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE---------SPAIIYADD 250
             +        N+  +H+++H + + Y   K  +F  L   +         S  +++A+D
Sbjct: 197 QDVAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAED 256

Query: 251 A---YSKEV-------MKRAHNA-----------GCRVLSVGYQGKFIH-LKKVCAIHNK 288
           A   Y +E         KR   A            C +L V    +    L+    +   
Sbjct: 257 ASAVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLLVQTLPQISQALRLRFVLSTV 316

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNA----LVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           Q+     +    D   PL G F   N     LV  GL   +G   A   +H++ +  + G
Sbjct: 317 QEPAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGL---LGTSLAAFAQHVQYVQPIQG 373

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPI 401
           R + V    +   + +DYAHT +S E IL  +      R   ++V+FG  G+RD  KR +
Sbjct: 374 RMQRVDMG-QDFEVLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAM 432

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEM 455
            G IA   A + ++TD++PR EDP  I   I  G              +R+ A+R    +
Sbjct: 433 QGAIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSL 492

Query: 456 LNKQDVLVVAGKGHE 470
              QD++++ GKGHE
Sbjct: 493 ARAQDLVLLLGKGHE 507


>gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-208]
          Length = 339

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 38/352 (10%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 8   ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +   +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 68  IAENQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESP 243
            SSH L Q R+ G       F NL +DH+DYH T   Y NAK  LF +L           
Sbjct: 179 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 238

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA S   M+ A  A      +  Q  F              + I+  G  FD  
Sbjct: 239 AVLNADDAESVR-MQTATAAHVITFGIKQQADF----------KASNIQITSHGSTFDLA 287

Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            P         + G F VYN L A     A+ I     +  LE +  V G F
Sbjct: 288 TPVGEYTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGXF 339


>gi|194467395|ref|ZP_03073382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
 gi|194454431|gb|EDX43328.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
          Length = 516

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 143/508 (28%), Positives = 230/508 (45%), Gaps = 75/508 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSATIRS 88
           VS DSR +++G +F    GN      F+P+ +A    +GA A V    Y   +       
Sbjct: 32  VSYDSRKVKSGTLFFC-KGN------FLPKYLASAKEKGAIAYVAEKEYPEGE------- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P ++V++ +K +SL  +  YG +P+N   I+A+TGT GK++ A F   I  +S  +  
Sbjct: 78  GLPAIIVNDEQKAMSLLGAAFYG-YPQNDLFIIAITGTKGKTTTAYFADHILAQS--TDN 134

Query: 146 QIGPTSTIS---------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            I   ST+           F  D  LTTP  + L   +    + G+TH+ +E SS    +
Sbjct: 135 HIALFSTLDRILGNKPEDKFKSD--LTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKK 192

Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----- 249
           +R+ G+K   G F N+  DHI  + H T   Y + K    E+LL   +  +I A+     
Sbjct: 193 NRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSAKCLINAETEKFI 248

Query: 250 DAY--------SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298
           D Y         +++   A       L    Q  F +   +  +H  +    ++  K   
Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIKLPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308

Query: 299 ---DFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              D  +   +PG++   NA   ++A+GL  A   D+   L H+     + GR E + +N
Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLSHVH----IRGRMEMINSN 364

Query: 353 SRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLA 410
           + G  IYVDYAH   SL+ +L  + R   + ++ VV G  GD+   +RP  GK +  +  
Sbjct: 365 THG-TIYVDYAHNYASLKRLLAFLKRQTNADKVTVVLGATGDKGISRRPGFGKALTEEQP 423

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T D+P  EDP  I  EI   I     K      +R  AI+ AI+     D++V+A
Sbjct: 424 DEVILTTDDPGFEDPMTIAREIDSYIDHDKVKNIQFEMDRETAIKKAIDGSGNDDIVVLA 483

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +    +   +     D  I R+ +
Sbjct: 484 GKGEDPYQKINGEDVPYPTDVKIARDYI 511


>gi|293384988|ref|ZP_06630822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|293389258|ref|ZP_06633720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|312905977|ref|ZP_07764990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|312909323|ref|ZP_07768179.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
 gi|291077666|gb|EFE15030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|291081422|gb|EFE18385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|310627972|gb|EFQ11255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|311290347|gb|EFQ68903.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
          Length = 513

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 45/467 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R+I  +S DSR + A  +F     N ++  +++  A+  G E  V    Y +   SA +
Sbjct: 42  QREITALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYEV---SAQL 96

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
                 ++V + +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 97  G-----IIVTDIKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 264 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           + +L  +R     G +IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP KI
Sbjct: 381 KNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440

Query: 429 RAE----IIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470
             E    I   +P +    +R EAI  A+ +     D +V+AGKG +
Sbjct: 441 CQEIQTHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 486


>gi|256959800|ref|ZP_05563971.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
 gi|256950296|gb|EEU66928.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
          Length = 508

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R+I  +S DSR + A  +F     N ++  +++  A+  G E  V    Y +   SA +
Sbjct: 37  QREITALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYEV---SAQL 91

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138
                 ++V + +K +++ +   Y  +P+N   ++  TGT GK++ A F + I      Q
Sbjct: 92  G-----IIVTDIKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           ++ L S  +  T    +F + + LTTP  + L + ++   + G+TH  +E SS     +R
Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203

Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255
           +  +    G F N+  DHI    H T   YF  K +L        S  I+   +A Y   
Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309
           + + A       +  G Q     +    A+ ++  +   VE      G    +   L G+
Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   NAL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL
Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           + +L  +R     G +IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP KI
Sbjct: 376 KNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435

Query: 429 RAE----IIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
             E    I   +P +    +R EAI  A+ +     D +V+AGKG
Sbjct: 436 CQEIQTHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|227543711|ref|ZP_03973760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300908776|ref|ZP_07126239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
 gi|227186279|gb|EEI66350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894183|gb|EFK87541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
          Length = 516

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 143/508 (28%), Positives = 233/508 (45%), Gaps = 75/508 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSATIRS 88
           VS DSR +++G +F    GN      F+P+ +A    +GA A V    Y   +       
Sbjct: 32  VSYDSRKVKSGTLFFC-KGN------FLPKYLASAKEKGAIAYVAEKEYPEGE------- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             P ++V++ +K +SL  +  Y  +P+N   I+A+TGT GK++ A F   I  +S  ++ 
Sbjct: 78  GLPAIIVNDEQKAMSLLGAAFY-DYPQNDLFIIAITGTKGKTTTAYFADHILAQS--TAN 134

Query: 146 QIGPTSTIS---------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            I   ST+           F  D  LTTP  + L   +    + G+TH+ +E SS    +
Sbjct: 135 HIALFSTLDRILGNKPEDEFKSD--LTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKK 192

Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----- 249
           +R+ G+K   G F N+  DHI  + H T   Y + K    E+LL   +  +I A+     
Sbjct: 193 NRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSAKCLINAETEKFT 248

Query: 250 DAY--------SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298
           D Y         +++   A       L    Q  F +   +  +H  +    ++  K   
Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308

Query: 299 ---DFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              D  +   +PG++   NA   ++A+GL  A   D+   L H+     + GR E + +N
Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVH----IRGRMEMINSN 364

Query: 353 SRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLA 410
           + G  IYVDYAH   SL+ +L  + R   +G++ VV G  GD+   +RP  GK +  +  
Sbjct: 365 THG-TIYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKALTEEQP 423

Query: 411 DIAIVTDDNPRSEDPEKIRAEII----HGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVA 465
           D  I+T D+P  EDP  I  EI     H     I+ + +R  AI+ AI+     D++V+A
Sbjct: 424 DEVILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSGNDDIVVLA 483

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +    +   +     D  I R+ +
Sbjct: 484 GKGEDPYQKINGEDVPYLTDVKIARDYI 511


>gi|324991345|gb|EGC23278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK353]
          Length = 481

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 217/467 (46%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A+  G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVTAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   + G TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I          M     
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIV------NSGMNHFQI 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + Q  +    GK    +D    L G F   NA+ A 
Sbjct: 251 VNEQVASM--EHDFYGTGSNNTIIDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +I+VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   ++K  +R EAI+ A+ + +++ D +++AGKG +   IV  GEK
Sbjct: 422 ISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467


>gi|327470473|gb|EGF15929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK330]
          Length = 481

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 215/464 (46%), Gaps = 44/464 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A++ G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHHPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L   ++   +   TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLITMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I        +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--Q 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
             C       +  F        I + Q  +    GK    +D    L G F   NA+ A 
Sbjct: 255 VAC------LEHDFYGAGSSNTITDSQAFSFEATGKLAGHYDI--QLIGRFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             C+ +G     + + +    V PGR E V T   G +I+VDYAH   SL  +L  +   
Sbjct: 307 LACLRLGASLKDIKKGIAATRV-PGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVVEEH 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPG 438
             G+II++ G  G++ + +R   G++     ++ ++ T D+P  EDP  I  EI   I  
Sbjct: 365 QKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTADDPNYEDPLAIAEEIASYISY 424

Query: 439 FIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
            +EK  +R EAI+ A+ + +++ D +++AGKG +   IV  GEK
Sbjct: 425 PVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467


>gi|270291605|ref|ZP_06197825.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
 gi|270279924|gb|EFA25762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
          Length = 507

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 219/494 (44%), Gaps = 57/494 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR ++ G +F    GN E  +L    A   GA   V    Y            T I
Sbjct: 32  ITYDSRKVRPGDMFFC-KGNFEPAYL--KAAREAGATTYVAEREYPEG------TGMTAI 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFV-----QQICQRSGLSS 144
           +V + TR    L A+  Y + P+N   I+ +TGT GK+S A F      QQ  Q+  L S
Sbjct: 83  IVTNVTRAMAVLSAT--YYEFPQNDLFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFS 140

Query: 145 FQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                +GP      F  D  LTTP  + L   +      G+ ++ +E SS    + R+ G
Sbjct: 141 TIDRIVGPRPE-DQFKSD--LTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYG 197

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +K   G F N+  DHI  + H+  + Y + K+    +L+      II AD    ++V   
Sbjct: 198 LKYDCGIFLNITPDHIGRNEHKDFEDYLHCKL----QLMVNSKRCIIDADTNRFEDVYGA 253

Query: 260 AH----------------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A                 N G        +   I+ +   A  +  +  +++ G   ++ 
Sbjct: 254 AKATTDPKQIYLFSADPANGGVDYTIKNAEDDLINNRFTIAAISSTKPALAITG---EYD 310

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G++   NA  A       G D    L+ L ++ V+PGR E++     G  ++VDYA
Sbjct: 311 LNVAGDYNQSNATAAIIAAALAGADRDAALKPLNEI-VIPGRMEYLAIPGHG-VVFVDYA 368

Query: 364 HTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H   SL  +LK ++     G+ IVV G  GD+   +R   GK   + AD+A +T D+P  
Sbjct: 369 HNYASLRALLKFVKHQYHDGKAIVVVGSPGDKGISRRAGFGKALSEQADVAYLTTDDPGF 428

Query: 423 EDPEKIRAEII-HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           EDP+ I A+I+ H  PG +E     +R EAIR AI      D++V+AGKG +    V   
Sbjct: 429 EDPQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAIVESGPHDIVVLAGKGEDPYQKVRGV 488

Query: 479 EKKMSVDCDIIREI 492
           +     D  + +E+
Sbjct: 489 DTPWPTDMGVAQEV 502


>gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa Japonica Group]
 gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6
           -diaminopimelate ligase [Oryza sativa Japonica Group]
 gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein,
           expressed [Oryza sativa Japonica Group]
 gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group]
          Length = 757

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 122/518 (23%), Positives = 243/518 (46%), Gaps = 50/518 (9%)

Query: 13  ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+     ++  +  V  D+  + AG ++V +    E+G   + +A  +GA 
Sbjct: 229 ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV---GEEGLAGLTEADKRGAV 285

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A+V        D   T+     +++VD+    L +  + LY +  ++  ++ V GT G +
Sbjct: 286 AVVADQTV---DIEGTLACRA-LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDGVT 341

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRL-----TTPSPIYLAKALSYLSSQG 181
           + A  V+ + +  G+ +  +G    + ++A  +N+L      +  PI + + ++ +   G
Sbjct: 342 TTAHLVRAMYEAMGVRTGMVG---VLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
                +EA++ G+    +D  I       TN+     +   T + Y N+   LF  ++ P
Sbjct: 399 AEAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEG 297
           +    ++  DD  S             V++  ++ K   +H  K      + +V +    
Sbjct: 459 ERHRKVVNIDDP-SAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPH 517

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L G   +YN L +  + +A+G     +++ +E++  +PGR E +      G 
Sbjct: 518 GILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFG- 576

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VD+A T  SL  +L  ++ +   RI+ V GC G+R++GKRP+M K+A + +D+ ++T 
Sbjct: 577 VIVDHARTPESLSRLLDGVKELGPRRIVTVIGCCGERERGKRPVMTKVAAEKSDVVMLTS 636

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEM 455
           DNP +EDP  I  +++ G+   +E+               G+RI        A+R A+ M
Sbjct: 637 DNPANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLHDIRRVAVRAAVAM 696

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + DV+V+ GKG++T  I  + +K+   D +  RE L
Sbjct: 697 GEQGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 733


>gi|332687175|ref|YP_004456949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371184|dbj|BAK22140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 510

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 196/428 (45%), Gaps = 42/428 (9%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++V + +K +++ +   Y  +P+N L V   TGT GK++ A F + I     L++   G 
Sbjct: 93  IIVSDVKKAMAILSMAFYN-YPQNKLKVIGFTGTKGKTTAAYFAKSI-----LTNATKGK 146

Query: 150 TSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           T+ +S+            ++LTTP  + L + ++      +TH  +E SS      R+  
Sbjct: 147 TAMLSTMCSTLDGKTFFKSKLTTPESLDLYRMMNEAVQNNMTHFVMEVSSQAYKIDRVYQ 206

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +    G F N+  DHI    H T   YF  K     +++      I+  +  Y + + + 
Sbjct: 207 LFYDVGIFLNITPDHISPIEHPTFDDYFYCK----RQIIAHSKQIILNRETDYFQLLKET 262

Query: 260 AHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEF 310
           A       +  G Q      + + KK     +    TI  E KDF     D+   L G+F
Sbjct: 263 ADYFNVPTIVYGNQPTTEVDYWYQKKS---QDSLAFTIVAE-KDFLFISGDYQLHLAGDF 318

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A      +G +       + +  +VPGR E +  N    ++Y+DYAH  +SL 
Sbjct: 319 NKSNALSAVIASSLLGANKKDCQTGINET-IVPGRMELL-KNKNNAQVYIDYAHNYDSLY 376

Query: 371 MILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +L  ++    +GR+IVV G  G++   +R   G +    ADIAI+T D+P  EDP+ I 
Sbjct: 377 HLLSFVKQDHKNGRVIVVIGSTGNKGISRRKDFGAVLSKFADIAILTMDDPADEDPKAIC 436

Query: 430 AEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            EI + I   +      +R +AI+ A+EM    D +V+AGKG +    +   +     D 
Sbjct: 437 QEIANSITTNVTSFITVDRKKAIQQALEMSQPADAVVLAGKGADLYQKIKGEDIPYEGDS 496

Query: 487 DIIREILG 494
           +I +E++ 
Sbjct: 497 NIAKELIN 504


>gi|330718777|ref|ZP_08313377.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc fallax KCTC
           3537]
          Length = 469

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 232/491 (47%), Gaps = 61/491 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAI--AQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           D+R ++   +FV + GN      F P+ +  A G   IV +    +         + P  
Sbjct: 4   DTRQVKPNTLFV-VKGN------FNPKYLENAVGITGIVTTKPLDI---------DIPQW 47

Query: 94  VVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQ-----RSGLSSF 145
           +V NT++ LSL ++  + + P++ L   A+TGT GK++ A F   I +     R+ L S 
Sbjct: 48  IVSNTQQALSLLSAEFFDR-PQDKLWIGAITGTKGKTTTAYFAYYILKHATQNRTALFST 106

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
               T   +S  + + LTTP    L K +      G+TH+ +E SS    + R+ G+   
Sbjct: 107 VDRITGPQASDKKKSDLTTPESYELFKDMRQAVDNGMTHLIMEVSSQAYLKDRVYGLHFD 166

Query: 206 AGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVM---KR 259
            G+F N+  DHI  + H T + Y   K+ L +      S  I+  D+  +  E+    K+
Sbjct: 167 VGTFLNISPDHIGPNEHPTFEDYLAHKLMLLDH-----SDTIVINDETDHHDEIFSHAKQ 221

Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFD-------FLFPLPG 308
            H AG  + +       QG ++ +    AIH +   T+S + K          +   +PG
Sbjct: 222 NHEAGKSLYTYSSNRQNQGDYVFISNDSAIH-ESHFTVSEQHKVEQLSEIIGHYRLNIPG 280

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   NAL A  +    G     +++ L+++  +PGR   +   S G   +VDYAH   S
Sbjct: 281 DFNESNALAALMIAGFAGAKHQDMVQGLDEV-FIPGRMLSMPIPSHG-VAFVDYAHNYAS 338

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  +L   ++   +G++IVV G  G++   +R   GK+  +LAD+  +T D+P+ EDP  
Sbjct: 339 MHALLSFAQSKYPTGKVIVVVGSPGNKGVSRRADFGKVIGELADVVFLTADDPQYEDPAD 398

Query: 428 IRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           I  EI       H +  F  + +RI+AI  AI    +QD+++VAGKG +    +   +  
Sbjct: 399 IANEIACHINNDHVVVHF--EMDRIKAIHAAIASAGEQDIVIVAGKGEDPYQKINGQDVP 456

Query: 482 MSVDCDIIREI 492
              D  +++++
Sbjct: 457 YIGDYAVVKQL 467


>gi|332359085|gb|EGJ36906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK49]
          Length = 481

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 221/467 (47%), Gaps = 50/467 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A++ G    +     S  DF   I   
Sbjct: 35  FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  ++   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQNHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   +   TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I        +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V+S+  +  F        I + Q  +    GK    +D    L G F   NA+ A 
Sbjct: 254 ---QVVSM--EHDFYGAGSSNTIIDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C+ +G      LE ++K      VPGR E V T   G +I+VDYAH   SL  +L  +
Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVV 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435
                G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   
Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAISEEIASY 421

Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
           I   ++K  +R EAI+ A+ + +++ D +++AGKG +   IV  GEK
Sbjct: 422 ISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467


>gi|251781849|ref|YP_002996151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242390478|dbj|BAH80937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 481

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 218/479 (45%), Gaps = 56/479 (11%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +   ++      +S DSR +    +F A     K D   ++ +AIA+G    V    Y L
Sbjct: 26  YHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD---YLKEAIAKGLPLYVSEVDYKL 82

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136
                    + P+++V + +K +SL A   Y  +P++   +L  TGT GK++ A F   I
Sbjct: 83  ---------DIPVVLVTDIKKAMSLIAMAFY-DNPQDQLKLLGFTGTKGKTTAAYFAYHI 132

Query: 137 CQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + S   +      +T+   +F + ++LTTP  + L   ++     G+TH+ +E SS   
Sbjct: 133 LKESYKPALLSTMNTTLDGQTFFK-SQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAY 191

Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD--D 250
              R+ G+    G F N+  DHI    H T + YF  K      LL + S A++     D
Sbjct: 192 LVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMENSRAVVINSGMD 246

Query: 251 AY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLF 304
            +   + +V  + H              F        I   Q  +    G+    +D   
Sbjct: 247 HFPFLANQVANQEH-------------AFYGALSDNQITTSQAFSFEANGQLAGHYDI-- 291

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F   NA+ A   C+ +G   A + + + K  V PGR E V T +   +++VDYAH
Sbjct: 292 QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME-VLTMTNHAKVFVDYAH 349

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSE 423
             +SLE +L  +    +G ++++ G  G++ + +R   G +     ++ ++ T D+P  E
Sbjct: 350 NGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRADFGAVINQHPNLTVILTADDPNFE 409

Query: 424 DPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEK 480
           DPE I  EI   I   I+   +R +AI+ A+ +    +D +++AGKG +   IV  GEK
Sbjct: 410 DPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPEDAVIIAGKGADAYQIV-KGEK 467


>gi|149003251|ref|ZP_01828147.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|169832669|ref|YP_001694935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|237650212|ref|ZP_04524464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237820905|ref|ZP_04596750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758711|gb|EDK65708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|168995171|gb|ACA35783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 481

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|194396806|ref|YP_002038162.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae G54]
 gi|194356473|gb|ACF54921.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus pneumoniae
           G54]
          Length = 481

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481


>gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC
           35896]
          Length = 510

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 180/378 (47%), Gaps = 28/378 (7%)

Query: 32  EVSSDSRH---IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           E+SS + H   ++   +FV I G K DGH ++  A+   A   +V+   + QD       
Sbjct: 23  EISSLAYHSAKVEQNGLFVCIKGYKADGHKYLASAVEHNA---IVAVVETFQDI------ 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P + V+++R  L+  +S  Y    +   ++ +T T+GK++ A  V ++ +++   +  
Sbjct: 74  DIPQVKVEDSRIALATMSSNYYDNPSKKMTVIGITATNGKTTTAFMVDEVLRKAKKKTGI 133

Query: 147 IGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG T  I S  +   + LTTP  + L K ++ +  QGVTH+++E SS  L+ HR+ G+  
Sbjct: 134 IG-TVMIRSLNEVIPSVLTTPESLDLQKYMAMMVEQGVTHLTMEVSSSALELHRVHGVDF 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               F N+ RDHID H + + YF  K  L   + P  + A+I ADD+   ++++   N  
Sbjct: 193 DFVCFNNISRDHIDLHGSFEDYFQIKSTLIRGMKPS-AKAVINADDSLLHDLIQEKQNQV 251

Query: 265 CRVLSVGYQGKF----IHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                   +G      + L    A    + N  + T+S+   +      +PG   VYNA+
Sbjct: 252 ITYSVESNRGDLYCTQLDLSTGIANWKIVPNPTKSTLSLLNSEVKIALSVPGYHSVYNAM 311

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  LC+   ID   + + L     V  RFE +    +  +I  D+   + ++ + L+ +
Sbjct: 312 AAMELCLLCQIDIDTIQDGLHSFKGVERRFELI--YDKEFKIIDDHFANTGNIRVTLETL 369

Query: 377 RTITSGRIIVVFGCGGDR 394
           + +   ++  ++   G R
Sbjct: 370 KKMKYEQLHFIYAIRGSR 387


>gi|300173159|ref|YP_003772325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887538|emb|CBL91506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysineligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 491

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 191/406 (47%), Gaps = 39/406 (9%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQ-----RSGL 142
           P   V N +K L++ +   +  +P+  L   A TGT GK++ A     I +      + L
Sbjct: 75  PQWQVTNVQKALAVLSMAFF-DYPQKALWIGAFTGTKGKTTAAYMAFNILKDATNNHTAL 133

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            S     T T     + + LTTP    L K +      G+TH+ +E SS    + R+ G+
Sbjct: 134 FSTVDRITGTGPGDKKKSDLTTPESYELFKDMRQAVDNGMTHLIMEVSSQAYLKQRVYGL 193

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           +   G+F N+  DHI  + H T + Y   KM LF+         I+ A+  + K V+  A
Sbjct: 194 RYNVGAFLNISPDHIGPNEHPTFEDYLAHKMMLFDH----SDQVIVNAESEHLKTVLGHA 249

Query: 261 HNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQV 312
                +V +    G  G + ++ +  AIH  + +   VE  D      ++   LPG+F  
Sbjct: 250 TQTHDKVYTYSLAGQGGNYSYVSRESAIHESRLI---VEPSDLNELAGEYRLNLPGDFNE 306

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSL 369
            NA+ A  +    G     ++  L+ +  +PGR      VG     G  +VDYAH   S+
Sbjct: 307 SNAMAALIMTALAGAKHENMVHGLDVV-FIPGRMLSLPIVGH----GVAFVDYAHNYASM 361

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             +L   +     G+++VV G  G++   +R   G++  +LADI  +T D+P+ E P+ I
Sbjct: 362 RALLNFAQNQYPEGKVLVVVGSPGNKGVSRRADFGRVVSELADIVYLTADDPQFESPKAI 421

Query: 429 RAEIIHGIPGF-IE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             EI   I    +E   + +RI+AI  AI+   ++D+++VAGKG +
Sbjct: 422 ADEIAENINNKQLEVHFEMDRIKAIFQAIKQSGERDIVIVAGKGED 467


>gi|168491578|ref|ZP_02715721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574296|gb|EDT94824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
          Length = 481

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K             Y  +F +      I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350
           GK   D+D    L G F   NA+ A   C+ +G      LE ++K      VPGR E V 
Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     
Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395

Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467
           +I + +T D+P  EDP  I  EI   I   +EK  +R EAI+ A+ + N + D +++AGK
Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +   I+   ++    D  +    L
Sbjct: 456 GVDCYQIIQGKKESYPGDTAVAENYL 481


>gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 511

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 36/471 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +   R + ++S DSR ++ G +F    G K D   ++  A  QGA   +  + YS Q 
Sbjct: 32  PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAANQGASVAMAPADYSAQ- 88

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI--- 136
              +   + P ++V + +K ++  +   +G    N  ++  TGT GK++   F + +   
Sbjct: 89  LKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTKGKTTSVYFTRHVMAK 148

Query: 137 ------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                  Q S +     G T   +       LTTP  + L + +       + ++ +E S
Sbjct: 149 ALGKVVAQLSSIDECLDGETFIPA------HLTTPESLDLFRMMKEAVDNQMKYLVMEVS 202

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S    + R+ G+ L  G F N+  DHI    H + + Y   K     E++      ++  
Sbjct: 203 SQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACK----SEIIDNCRILVVNR 258

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFP 305
           + +    + ++AH+ G +V+S G        +     H    VT +   +   D DF   
Sbjct: 259 ECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFRVM 318

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+F V NAL A  +   +   S      L +   VPGR EF+  + +G    VDYAH 
Sbjct: 319 MPGDFNVANALAALTVAAQVAPVSEDFRAGLAET-TVPGRMEFI-KDKQGVVACVDYAHN 376

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             SL      ++     GR+IVV G  G + + +R  +G+     AD+AI+T ++   ED
Sbjct: 377 YLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGRALSQYADVAILTSEDNFFED 436

Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P +I A+I   I       I   +R  AI  A  M    D L +A KG ET
Sbjct: 437 PHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDALFMAAKGRET 487


>gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 511

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 36/471 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +   R + ++S DSR ++ G +F    G K D   ++  A  QGA   +  + YS Q 
Sbjct: 32  PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAANQGASVAMAPADYSAQ- 88

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI--- 136
              +   + P ++V + +K ++  +   +G    N  ++  TGT GK++   F + +   
Sbjct: 89  LKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTKGKTTSVYFTRHVMAK 148

Query: 137 ------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                  Q S +     G T   +       LTTP  + L + +       + ++ +E S
Sbjct: 149 ALGKVVAQLSSIDECLDGETFIPA------HLTTPESLDLFRMMKEAVDNQMKYLVMEVS 202

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S    + R+ G+ L  G F N+  DHI    H + + Y   K     E++      ++  
Sbjct: 203 SQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACK----SEIIDNCRILVVNR 258

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFP 305
           + +    + ++AH+ G +V+S G        +     H    VT +   +   D DF   
Sbjct: 259 ECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFRVM 318

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+F V NAL A  +   +   S      L +   VPGR EF+  + +G    VDYAH 
Sbjct: 319 MPGDFNVANALAALTVTAQVAPVSEDFRAGLAET-TVPGRMEFI-KDKQGVVACVDYAHN 376

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             SL      ++     GR+IVV G  G + + +R  +G+     AD+AI+T ++   ED
Sbjct: 377 YLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGRALSQYADVAILTSEDNFFED 436

Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P +I A+I   I       I   +R  AI  A  M    D L +A KG ET
Sbjct: 437 PHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDALFMAAKGRET 487


>gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 511

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 36/471 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +   R + ++S DSR ++ G +F    G K D   ++  A  QGA   +  + YS Q 
Sbjct: 32  PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAANQGASVAMAPADYSAQ- 88

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI--- 136
              +   + P ++V + +K ++  +   +G    N  ++  TGT GK++   F + +   
Sbjct: 89  LKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTKGKTTSVYFTRHVMAK 148

Query: 137 ------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                  Q S +     G T   +       LTTP  + L + +       + ++ +E S
Sbjct: 149 ALGKVVAQLSSIDECLDGETFIPA------HLTTPESLDLFRMMKEAVDNQMKYLVMEVS 202

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S    + R+ G+ L  G F N+  DHI    H + + Y   K     E++      ++  
Sbjct: 203 SQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACK----SEIIDNCRILVVNR 258

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFP 305
           + +    + ++AH+ G +V+S G        +     H    VT +   +   D DF   
Sbjct: 259 ECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFRVM 318

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+F V NAL A  +   +   S      L +   VPGR EF+  + +G    VDYAH 
Sbjct: 319 MPGDFNVANALAALTVAAQVAPVSEDFRAGLAET-TVPGRMEFI-KDKQGVVACVDYAHN 376

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             SL      ++     GR+IVV G  G + + +R  +G+     AD+AI+T ++   ED
Sbjct: 377 YLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGRALSQYADVAILTSEDNFFED 436

Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P +I A+I   I       I   +R  AI  A  M    D L +A KG ET
Sbjct: 437 PHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDALFMAAKGRET 487


>gi|227524711|ref|ZP_03954760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088195|gb|EEI23507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 514

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 205/443 (46%), Gaps = 55/443 (12%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           P ++V N +K +SL ++  +G  P+N L   A TGT GK++ A F + I  +  +   ++
Sbjct: 84  PGIIVKNIQKSMSLLSAAFFG-FPQNSLPTIAYTGTKGKTTSAYFTKSILDK--VYDRKV 140

Query: 148 GPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              STI++   +       + LTTP  + L   ++      +TH+ +E SS    + R+ 
Sbjct: 141 ALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRVY 200

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            ++   G F N+  DHI  + H T   Y + K    E+LL      +I AD  +  +V  
Sbjct: 201 NLRYDVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSKKCVINADSDHMVDVYY 256

Query: 259 RA------------HNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFD 301
            A            H  G  +   +    ++  L    + +  Q +++S + K    D  
Sbjct: 257 TAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIQLISVSDKAKQLGIDGT 316

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSRG 355
           +   + G++   NA+ AA       I SA++  H  ++        VPGR E   T   G
Sbjct: 317 YEISIAGDYNEGNAVSAA-------ITSAMMGAHPTEIEYGLSHTTVPGRMEIYSTKQHG 369

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             IYVDYAH   SL  +L  ++  +  G +IV+ G  GD+   +R  +GK   + A++A 
Sbjct: 370 -TIYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGIDRREGLGKAINESANVAY 428

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-PGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T D+P +EDP+ I  EI   I P  ++     +R  AI+ A+    + D++VVAGKGH+
Sbjct: 429 LTTDDPATEDPKVIADEIAAYIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKGHD 488

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +       + D  I+  ++
Sbjct: 489 AFQKINGKNVPYAGDATIVANLV 511


>gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 511

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 36/471 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +   R + ++S DSR ++ G +F    G K D   ++  A  QGA   +  + YS Q 
Sbjct: 32  PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAANQGASVAMAPADYSAQ- 88

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI--- 136
              +   + P ++V + +K ++  +   +G    N  ++  TGT GK++   F + +   
Sbjct: 89  LKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTKGKTTSVYFTRHVMAK 148

Query: 137 ------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                  Q S +     G T   +       LTTP  + L + +       + ++ +E S
Sbjct: 149 ALGKVVAQLSSIDECLDGETFIPA------HLTTPESLDLFRMMKEAVDNQMKYLVMEVS 202

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S    + R+ G+ L  G F N+  DHI    H + + Y   K     E++      ++  
Sbjct: 203 SQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACK----SEIIDNCRILVVNR 258

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFP 305
           + +    + ++AH+ G +V+S G        +     H    VT +   +   D DF   
Sbjct: 259 ECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFRVM 318

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+F V NAL A  +   +   S      L +   VPGR EF+  + +G    VDYAH 
Sbjct: 319 MPGDFNVANALAALTVAAQVAPVSEDFRAGLAET-TVPGRMEFI-KDKQGVVACVDYAHN 376

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             SL      ++     GR+IVV G  G + + +R  +G+     AD+AI+T ++   ED
Sbjct: 377 YLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGRALSQYADVAILTSEDNFFED 436

Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P +I A+I   I       I   +R  AI  A  M    D L +A KG ET
Sbjct: 437 PHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDALFMAAKGRET 487


>gi|55163150|emb|CAH57483.1| putative UDP-MurNac-tripeptide synthetase [Actinoplanes
           teichomyceticus]
          Length = 298

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 141/289 (48%), Gaps = 37/289 (12%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIY----ADDAY 252
           I+  AG +TN G+DH+D+H T + YF AK RLF+      +L  + PA++         Y
Sbjct: 1   IRFAAGGYTNFGQDHLDFHPTTEEYFAAKARLFDGRTEVGVLNHDDPAVMSLLAPGMVTY 60

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S      A      V    +  +F+        H    +T+            LPG   V
Sbjct: 61  SASGNTEATWWASDVRPSDFGQRFV-------AHGPGGITVETG-------VALPGLHNV 106

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSL- 369
            NAL+A  L +A+GID  +    + +   VPGR E V      G I   VDYAH  N++ 
Sbjct: 107 ANALLALALLVAVGIDPQVAGTGVRECRGVPGRLEQVAAP---GEILGVVDYAHKPNAIV 163

Query: 370 --EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
                L+ + +   GR++ V G GGDRD+GKRP+MG+ A   AD+ I+TDDNPR+EDP  
Sbjct: 164 AALAALRELASARGGRLVCVLGAGGDRDRGKRPLMGEAAARGADLVIITDDNPRTEDPAA 223

Query: 428 IR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +R      AE  H     +E   R  AI  A+ +    DV+ V GKG+E
Sbjct: 224 VRAAVRRGAEEAHTAAKVLEVAGRRAAIDEAVRLAAAGDVIAVLGKGNE 272


>gi|325694972|gb|EGD36876.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK150]
          Length = 481

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 218/464 (46%), Gaps = 44/464 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S DSR   A  +F   V  +     F+ +A++ G    +     S  DF   I   
Sbjct: 35  FDSISYDSRQADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L+V++ ++ +SL A   YG HPE    +LA TGT GK++ A F  QI  +S   +  
Sbjct: 85  -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               +T+   +F + + LTTP  + L K ++   +   TH+ +E SS    + R+ G+  
Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H T + YF  K      LL   S A+I        +++K    
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--- 253

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319
              +V S+  +  F        I + +  +    GK    +D    L G F   NA+ A 
Sbjct: 254 ---QVASM--EHDFYGAGSSNTITDSRAFSFEATGKLAGHYDI--QLIGHFNQENAVAAG 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             C+ +G     + + +    V PGR E V T   G +++VDYAH   SL  +L  +   
Sbjct: 307 LACLRLGASLKDIKKGIAATRV-PGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVVEEH 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPG 438
             G+II++ G  G++ + +R   G++     ++ ++ T D+P  EDP  I  EI   I  
Sbjct: 365 QKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTADDPNYEDPLAIAEEIASYISY 424

Query: 439 FIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
            ++K  +R EAI+ A+ +  ++ D +++AGKG +   IV  GEK
Sbjct: 425 PVDKIADREEAIKKALSLTEREGDAVILAGKGADAYQIV-EGEK 467


>gi|289574841|ref|ZP_06455068.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis K85]
 gi|289539272|gb|EFD43850.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis K85]
          Length = 290

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG + V N LVA  +   +G+     +  L ++ V PGR E +    +G    VDYAH 
Sbjct: 94  LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHK 151

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP
Sbjct: 152 PEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDP 210

Query: 426 EKIRAEIIHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             IR EI+ G   + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 211 TAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 262


>gi|304384559|ref|ZP_07366905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328753|gb|EFL95973.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 507

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 219/494 (44%), Gaps = 57/494 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR ++ G +F    G+ E  +L    A   GA   V    Y            T I
Sbjct: 32  ITYDSRKVRPGDMFFC-KGSFEPAYL--KAAREAGATTYVAEREYPEG------TGMTAI 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFV-----QQICQRSGLSS 144
           +V + TR    L A+  Y + P+N   I+ +TGT GK+S A F      QQ  Q+  L S
Sbjct: 83  IVTNVTRAMAVLSAT--YYEFPQNDLFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFS 140

Query: 145 FQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                +GP      F  D  LTTP  + L   +      G+ ++ +E SS    + R+ G
Sbjct: 141 TIDRIVGPRPE-DQFKSD--LTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYG 197

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +K   G F N+  DHI  + H+  + Y + K+    +L+      II AD    ++V   
Sbjct: 198 LKYDCGIFLNITPDHIGRNEHKDFEDYLHCKL----QLMVNSKRCIIDADTNRFEDVYGA 253

Query: 260 AH----------------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A                 N G        +   I+ +   A  +  +  +++ G   ++ 
Sbjct: 254 ARATTDPKQIYLFSADPANGGVDYTIKNAEDDLINNRFTIAATSSTKPALAITG---EYD 310

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G++   NA  A       G D    L+ L ++ V+PGR E++     G  ++VDYA
Sbjct: 311 LNVAGDYNQSNATAAIIAAALAGADRDAALKPLSEI-VIPGRMEYLAIPGHG-VVFVDYA 368

Query: 364 HTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H   SL  +LK ++     G+ IVV G  GD+   +R   GK   + AD+A +T D+P  
Sbjct: 369 HNYASLRALLKFVKHQYHDGKAIVVVGSPGDKGISRRAGFGKALSEQADVAYLTTDDPGF 428

Query: 423 EDPEKIRAEII-HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           EDP+ I A+I+ H  PG +E     +R EAIR AI      D++V+AGKG +    V   
Sbjct: 429 EDPQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAIVESGPHDIVVLAGKGEDPYQKVRGV 488

Query: 479 EKKMSVDCDIIREI 492
           +     D  + +E+
Sbjct: 489 DTPWPTDMGVAQEV 502


>gi|320528691|ref|ZP_08029843.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
 gi|320130901|gb|EFW23479.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
          Length = 506

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 194/441 (43%), Gaps = 50/441 (11%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++  A+ +GA A +    Y           N P + + N R  ++  A+ +Y   P   L
Sbjct: 60  YLQDAVNKGAFAYLSEVEYP--------EVNIPWIPLTNVRYAMANLAT-MYYNDPWKEL 110

Query: 119 AVTGTSG-----------KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            V G +G           K+ + ++++++ +        IG    +  F  ++ LTTP P
Sbjct: 111 NVIGLTGTKGKSTTTYYVKAILDTYLERVGKNESAVISSIGTYDGVERF--ESHLTTPEP 168

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQA 225
           + L +  S      +  V++E SS  L   R+ G+     +F N+G DHI    H T + 
Sbjct: 169 LDLERHFSNAVESKIDFVTMEVSSQALKYDRVLGVNFSVAAFLNIGYDHISSVEHPTWED 228

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           YF +K+R+FE+     +  ++  D  +  E++  A  A  +V++                
Sbjct: 229 YFASKLRIFEQC----TYGLVNLDSDHCDEILDAA-KAAKKVITFSEANDTADFYGYDVH 283

Query: 286 HNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLH 340
                +   V G DFD  F   +PG F V NAL A  +     I   D    L H +   
Sbjct: 284 KVGNDIVFKVRGSDFDEEFKLSMPGLFNVSNALCAIAIARLYDIPVRDIQAGLYHAK--- 340

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKR 399
            VPGR E   +N +     VDYAH   S + + +++R+   G R  ++FGC G + + +R
Sbjct: 341 -VPGRMEIYTSNDKKITAIVDYAHNQLSFQKLFESVRSEYPGYRATIIFGCPGKKAKDRR 399

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAI 453
             +G+IA   AD   +T+++   EDP  I  EI   +    EK       +R +AI  A+
Sbjct: 400 HDLGEIAGKNADYIYLTEEDAGEEDPLAIAHEIARAVEK--EKAPYEIIIDREKAIARAV 457

Query: 454 E---MLNKQDVLVVAGKGHET 471
           E    +    V+++ GKG ET
Sbjct: 458 EDAANVQGNTVILITGKGAET 478


>gi|10566744|dbj|BAB15946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           glutamicum]
          Length = 555

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 198/446 (44%), Gaps = 23/446 (5%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IF A+ G +  G  F     A  A AI+  +A  L+  +    +  PI+VVD+ R  L  
Sbjct: 86  IFAAVPGTRTHGAQFAGTDNAAKAVAILTDAA-GLEVLNEAGETR-PIIVVDDVRAVLGA 143

Query: 105 FASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNR 161
            +S +YG   ++  ++ VTGTSGK++ +  +++    +G     IG T T I       +
Sbjct: 144 ASSSIYGDPSKDFTLIGVTGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTK 203

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTP    L    + +   GVTHV +E SSH L   R+ G      +FTNL +DH+D+H 
Sbjct: 204 LTTPEAPTLQALFARMRDHGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHP 263

Query: 222 TQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           T   YF+AK   F    P      ++  DD++ + +   A +    V ++G +  F    
Sbjct: 264 TMDDYFDAKALFFRADSPLVADKQVVCVDDSWGQRMASVAADVQT-VSTLGQEADFSATD 322

Query: 281 KVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              +    Q   I+    + +     LPG F V NA +A        +  A     + K+
Sbjct: 323 INVSDSGAQSFKINAPSNQSYQVELALPGAFNVANATLAFAAAAPW-VLMATFARGMSKV 381

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VPGR E +    +     VDYAH   ++  +L  +RT   GR+   + C   RD  KR
Sbjct: 382 -AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQIDGRLGSGYRCWWRRDSTKR 439

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----------FIEKGNRIEAI 449
             MG      +  +  TD N        IRA +  G              +E G+R EAI
Sbjct: 440 GPMGSCP-HRSGSSYCTDAN-LVRVAGTIRAAVTAGAQQGASESERPVEVLEIGDRAEAI 497

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIV 475
           R  +E     D +VVAGKGHE   +V
Sbjct: 498 RVLVEWAQPGDGIVVAGKGHEVGQLV 523


>gi|227513568|ref|ZP_03943617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227083441|gb|EEI18753.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 511

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 202/444 (45%), Gaps = 57/444 (12%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           P ++V N +K +SL ++  +G  P+N L   A TGT GK++ A F + I  +  +   ++
Sbjct: 81  PGIIVKNIQKSMSLLSAAFFG-FPQNSLPTIAYTGTKGKTTSAYFTKSILDK--VYDRKV 137

Query: 148 GPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              STI++   +       + LTTP  + L   ++      +TH+ +E SS    + R+ 
Sbjct: 138 ALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRVY 197

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            ++   G F N+  DHI  + H T   Y + K    E+LL      +I AD  +  +V  
Sbjct: 198 NLRYDVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSKKCVINADSDHMVDVYY 253

Query: 259 RA------------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DF 300
            A            H  G   ++      F +     ++   +   ISV  K      D 
Sbjct: 254 TAKATSQPEDIFVYHRKGS-TMNEQLPKDFEYQSLADSLSENKIRLISVSDKAKQLGIDG 312

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSR 354
            +   + G++   NA+ AA       I SA++  H  ++        VPGR E   T   
Sbjct: 313 TYEISIAGDYNEGNAVSAA-------ITSAMMGAHPTEIEYGLSHTTVPGRMEIYSTKQH 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G IYVDYAH   SL  +L  ++  +  G +IV+ G  GD+   +R  +GK   + A++A
Sbjct: 366 -GTIYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGIDRREGLGKAINESANVA 424

Query: 414 IVTDDNPRSEDPEKIRAEI-IHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +T D+P +EDP+ I  EI  H  P  ++     +R  AI+ A+    + D++VVAGKGH
Sbjct: 425 YLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKGH 484

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    +       + D  I+  ++
Sbjct: 485 DAFQKINGKNVPYAGDATIVANLV 508


>gi|289443663|ref|ZP_06433407.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
 gi|289416582|gb|EFD13822.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 247

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG + V N LVA  +   +G+     +  L ++ V PGR E +    +G    VDYAH 
Sbjct: 51  LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHK 108

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP
Sbjct: 109 PEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDP 167

Query: 426 EKIRAEIIHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             IR EI+ G   + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 168 TAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 219


>gi|227510559|ref|ZP_03940608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190211|gb|EEI70278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 514

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 204/443 (46%), Gaps = 55/443 (12%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           P ++V N +K +SL ++  +G  P+N L   A TGT GK++ A F + I  +  +   ++
Sbjct: 84  PGIIVKNIQKSMSLLSAAFFG-FPQNNLPTIAYTGTKGKTTSAYFTKSILDK--VYDRKV 140

Query: 148 GPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              STI++   +       + LTTP  + L   ++      +TH+ +E SS    + R+ 
Sbjct: 141 ALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRVY 200

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +    G F N+  DHI  + H T   Y + K    E+LL      +I AD  +  +V  
Sbjct: 201 NLHYNVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSKKCVINADSDHMVDVYY 256

Query: 259 RA------------HNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFD 301
            A            H  G  +   +    ++  L    + +  Q +++S + K    D  
Sbjct: 257 TAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIQLISVSDKAKRLGIDGT 316

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSRG 355
           +   + G++   NA+ AA       I SA++  H  ++        VPGR E   T   G
Sbjct: 317 YEISIAGDYNEGNAVSAA-------ITSAMMGAHPTEIEYGLSHTTVPGRMEIYSTKQHG 369

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             IYVDYAH   SL  +L  ++  +  G +IV+ G  GD+   +R  +GK   + A++A 
Sbjct: 370 -TIYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGIDRREGLGKAINESANVAY 428

Query: 415 VTDDNPRSEDPEKIRAEI-IHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T D+P +EDP+ I  EI  H  P  ++     +R  AI+ A+    + D++VVAGKGH+
Sbjct: 429 LTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKGHD 488

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +       + D  I+  ++
Sbjct: 489 AFQKINGKNVPYAGDATIVANLV 511


>gi|297742512|emb|CBI34661.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 145/284 (51%), Gaps = 31/284 (10%)

Query: 228 NAKMRLFEELL-PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCA 284
           NAK +LF  ++ P     I+  DD  +   + +  N    V++   + K   +H  K   
Sbjct: 36  NAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIAQG-NPDVPVVTFAMENKDADVHPLKFEL 94

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              + QV +       +    L G   +YN L A  + IA+G     ++  +E++  VPG
Sbjct: 95  SLFETQVLVQTPKGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPG 154

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +      G I VDYAHT ++L  +L ++R + + RII VFGC G+ D+GKRPIM K
Sbjct: 155 RCELIDEEQAFGVI-VDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTK 213

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----------------IEKGNRI-- 446
           IA D +D+ I+T DNP++EDP  I  +++ G+ G+                +  G+R+  
Sbjct: 214 IATDKSDVVILTSDNPKNEDPLDILDDMLAGV-GWTMHDYLKYGANDYYPPLPNGHRLFL 272

Query: 447 -----EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                 A+R A+ M  + D++VVAGKGHET  I   G+KK   D
Sbjct: 273 HDIRRVAVRAAVAMGEEGDIVVVAGKGHETYQI--EGDKKEFFD 314


>gi|307084812|ref|ZP_07493925.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
 gi|308365619|gb|EFP54470.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
          Length = 250

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG + V N LVA  +   +G+     +  L ++ V PGR E +    +G    VDYAH 
Sbjct: 54  LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHK 111

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP
Sbjct: 112 PEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDP 170

Query: 426 EKIRAEIIHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             IR EI+ G   + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 171 TAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 222


>gi|260201273|ref|ZP_05768764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 256

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG + V N LVA  +   +G+     +  L ++ V PGR E +    +G    VDYAH 
Sbjct: 60  LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHK 117

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP
Sbjct: 118 PEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDP 176

Query: 426 EKIRAEIIHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             IR EI+ G   + G    +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 177 TAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 228


>gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 513

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 181/378 (47%), Gaps = 30/378 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+SDSR ++ G++FVAI G + DG+ +I +AI +GA  +++ + + +      I+     
Sbjct: 30  VTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGA--VIIYTEHRITALGVMIK----- 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            +  N RK L+   +  Y  HP     ++ +TGT+GK++ +  +    + SG+S   IG 
Sbjct: 83  -ICSNARKTLADLCNAFY-DHPSEKIRVIGITGTNGKTTTSHIIYHALKESGVSVGLIGT 140

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               I++      LTTPS   +   L+ +  Q V  V +E SSHGL   R+ GIK     
Sbjct: 141 LDIKINNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVMEVSSHGLKSERVHGIKFDIAI 200

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+ RDH++YH+    Y  +K +LF+ L P +  A++  DD +S E++    N G  V+
Sbjct: 201 HTNIERDHLNYHKNMGDYIRSKKKLFDCLSPGK-VALLNLDDNHSLELL--TGNNGLIVV 257

Query: 269 SVGYQ------GKFIHLKKVCAIHNKQQ------VTISVEGKDFDFLFPLPGEFQVYNAL 316
           + G           I  +     H   Q        + VE  ++ F   L G+  +YN+L
Sbjct: 258 TYGLNVRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPFEYPFSINLLGKHNIYNSL 317

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   C+ + +    + ++++    V  R E +    +G  +  D++H   S   + +++
Sbjct: 318 AAITCCLLLDLSCEEIAKNIKSFTGVTRRLEVI--YKKGYTVIDDFSHNPASYGAVFESM 375

Query: 377 RTITSGRIIVVFGCGGDR 394
           + +    + V+    G R
Sbjct: 376 QNLEYKNLHVINAIRGSR 393


>gi|289524488|ref|ZP_06441342.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502272|gb|EFD23436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 201

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 103/174 (59%), Gaps = 11/174 (6%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDY 362
           PL GE+ V NAL A+ +  ++  D+ ++ + LE    VPGR E  FV     G    +DY
Sbjct: 1   PLLGEYNVLNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFV---EDGPVCIIDY 57

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE +L  ++ + +GR+ +VFG GG+R +  RPI+G IA   AD  +VT DNPRS
Sbjct: 58  AHTPDALEKVLSTVKPLCNGRLWLVFGHGGERFKENRPILGSIAARFADRIVVTMDNPRS 117

Query: 423 EDPEKIRAEIIHGI---PGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           EDP  I  +I  GI   PG  E     +R EA+  A++   K DV++V GKG E
Sbjct: 118 EDPRDIATQIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTGKGPE 171


>gi|121535664|ref|ZP_01667469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305768|gb|EAX46705.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 492

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 171/376 (45%), Gaps = 28/376 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S  S  I+ GW+FVAI G   DG+ +  +A+  GA+A+V  +   L   +       P+
Sbjct: 14  ISCHSGEIKPGWVFVAIRGRAADGNAYAAEAVRHGAKAVVTDAPDRLPPLA------IPV 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            VV + R+ L+  A+  Y  HP    N++ VTG++GK++VA  ++ I + +G     IG 
Sbjct: 68  AVVPDARQALAALAAHFY-NHPSRSLNLVGVTGSNGKTTVALMLEHIFRTAGHLPGLIGT 126

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +   +  +RLTTP    L + L+ +   GVTH ++E S+ G++  R+D +    G 
Sbjct: 127 VRVNVGKISFPSRLTTPDAASLQRYLALMRDSGVTHAAMEVSAQGVEMSRVDHVTFSCGI 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D+H T   Y  AK R    L P  SP ++  DD + +   + A  AG  V+
Sbjct: 187 LTNICADHLDFHHTFADYLAAKERFLTLLGP--SPLVVNRDDDHCR---RMAALAGGPVI 241

Query: 269 SVGYQGK---FIHLKKVCAIHNKQQVTIS-------VEGKDFDFLFPLPGEFQVYNALVA 318
           +V   G       +    A  +K ++T S       +         PL G   V NAL+A
Sbjct: 242 AVSLTGPADVTAQILHTPAYGSKFRLTWSTLPGRQNIPAGQITVSLPLAGRHNVENALLA 301

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A   +  GI    +         V  R E       G  +  D A    S++ +   I T
Sbjct: 302 AAAGLLHGISPDEIAAAFSSFQGVERRLEIY--RCGGFTVIDDTALNPGSIDAVFATITT 359

Query: 379 ITSGRIIVVFGCGGDR 394
               R++VV    G R
Sbjct: 360 FRYRRLVVVNAIRGGR 375


>gi|227514106|ref|ZP_03944155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087477|gb|EEI22789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 518

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 220/498 (44%), Gaps = 45/498 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +R+     V  +S+ +Q+  +F       KED   ++ +AI +GA A V   +Y      
Sbjct: 32  YRQHFFYHVEYNSKLVQSETLFFCKGAAFKED---YLNEAIDRGATAYVAEQSY------ 82

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSG 141
              ++    L+V N ++ ++L ++  YG    ++ A+  TGT GK+S A F         
Sbjct: 83  ---QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGT 139

Query: 142 LSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                +  T   S    D   ++LTTP  + L + L      G+TH+ +E SS      R
Sbjct: 140 DDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDR 199

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +    G F N+  DH+   Q +   F   +   E+LL   S  ++     + +EV +
Sbjct: 200 VYSLHFGIGVFLNISSDHVG--QNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQ 257

Query: 259 RAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK----DFDFLFP 305
            A    A  ++   G  G    L     I        N Q   +S  G     D ++   
Sbjct: 258 AAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSS 317

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G++ V NA  AA      G+    + E   ++H+  GR E + T    G +YVDYAH 
Sbjct: 318 VAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIA-GRMEVIRTQEH-GTVYVDYAHD 375

Query: 366 SNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNP 420
             S++ +L  ++         +I VV G  G++   +RP +GK +A +  +  I+T D+P
Sbjct: 376 YASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVILTTDDP 435

Query: 421 RSEDPEKIRAE----IIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             EDP+ I AE    I H   G +E   +R EAI TAI+     D++V+AGKG +    V
Sbjct: 436 AFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKGTDQYQKV 495

Query: 476 TNGEKKMSVDCDIIREIL 493
              +     D  + R+++
Sbjct: 496 AGVDTPYPGDIAVARQVI 513


>gi|299783726|gb|ADJ41724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 518

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 220/498 (44%), Gaps = 45/498 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +R+     V  +S+ +Q+  +F       KED   ++ +AI +GA A V   +Y      
Sbjct: 32  YRQHFFYHVEYNSKLVQSETLFFCKGAAFKED---YLNEAIDRGATAYVAEQSY------ 82

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSG 141
              ++    L+V N ++ ++L ++  YG    ++ A+  TGT GK+S A F         
Sbjct: 83  ---QNEATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGT 139

Query: 142 LSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                +  T   S    D   ++LTTP  + L + L      G+TH+ +E SS      R
Sbjct: 140 DDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDR 199

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +    G F N+  DH+   Q +   F   +   E+LL   S  ++     + +EV +
Sbjct: 200 VYSLHFGIGVFLNISSDHVG--QNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQ 257

Query: 259 RAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK----DFDFLFP 305
            A    A  ++   G  G    L     I        N Q   +S  G     D ++   
Sbjct: 258 AAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSS 317

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G++ V NA  AA      G+    + E   ++H+  GR E + T    G +YVDYAH 
Sbjct: 318 VAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIA-GRMEVIRTQEH-GTVYVDYAHD 375

Query: 366 SNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNP 420
             S++ +L  ++         +I VV G  G++   +RP +GK +A +  +  I+T D+P
Sbjct: 376 YASVKRLLAFLKGQQYQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVILTTDDP 435

Query: 421 RSEDPEKIRAE----IIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             EDP+ I AE    I H   G +E   +R EAI TAI+     D++V+AGKG +    V
Sbjct: 436 AFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKGTDQYQKV 495

Query: 476 TNGEKKMSVDCDIIREIL 493
              +     D  + R+++
Sbjct: 496 AGVDTPYPGDIAVARQVI 513


>gi|323126663|gb|ADX23960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 436

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 201/438 (45%), Gaps = 48/438 (10%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-- 116
           ++ +AIA+G    V    Y L         + P+++V + +K +SL A   Y  +P++  
Sbjct: 17  YLKEAIAKGLPLYVSEVDYKL---------DIPVVLVTDIKKAMSLIAMAFY-DNPQDQL 66

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKA 173
            +L  TGT GK++ A F   I + S   +      +T+   +F + ++LTTP  + L   
Sbjct: 67  KLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNTTLDGQTFFK-SQLTTPESLDLFAM 125

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           ++     G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K 
Sbjct: 126 MAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKR 185

Query: 232 RLFEELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            L E      +  I    D +   + +V  + H              F        I   
Sbjct: 186 LLMEN---SRAVVINSGMDHFPFLANQVANQEH-------------AFYGALSDNQITTS 229

Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           Q  +    G+    +D    L G F   NA+ A   C+ +G   A + + + K  V PGR
Sbjct: 230 QAFSFEANGQLAGHYDI--QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGR 286

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V T +   +++VDYAH  +SLE +L  +    +G ++++ G  G++ + +R   G +
Sbjct: 287 ME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRADFGAV 345

Query: 406 ALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVL 462
                ++ ++ T D+P  EDPE I  EI   I   I+   +R +AI+ A+ +    +D +
Sbjct: 346 INQHPNLTVILTADDPNFEDPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPEDAV 405

Query: 463 VVAGKGHETVHIVTNGEK 480
           ++AGKG +   IV  GEK
Sbjct: 406 IIAGKGADAYQIV-KGEK 422


>gi|184156310|ref|YP_001844650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227654|dbj|BAG28170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- lysine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 518

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 220/498 (44%), Gaps = 45/498 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +R+     V  +S+ +Q+  +F       KED   ++ +AI +GA A V   +Y      
Sbjct: 32  YRQHFFYHVEYNSKLVQSETLFFCKGAAFKED---YLNEAIDRGATAYVAEQSY------ 82

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSG 141
              ++    L+V N ++ ++L ++  YG    ++ A+  TGT GK+S A F         
Sbjct: 83  ---QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGT 139

Query: 142 LSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                +  T   S    D   ++LTTP  + L + L      G+TH+ +E SS      R
Sbjct: 140 DDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDR 199

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +    G F N+  DH+   Q +   F   +   E+LL   S  ++     + +EV +
Sbjct: 200 VYSLHFGIGVFLNISSDHVG--QNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQ 257

Query: 259 RAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK----DFDFLFP 305
            A    A  ++   G  G    L     I        N Q   +S  G     D ++   
Sbjct: 258 AAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSS 317

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G++ V NA  AA      G+    + E   ++H+  GR E + T    G +YVDYAH 
Sbjct: 318 VAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIA-GRMEVIRTQEH-GTVYVDYAHD 375

Query: 366 SNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNP 420
             S++ +L  ++         +I VV G  G++   +RP +GK +A +  +  I+T D+P
Sbjct: 376 YASVKRLLAFLKDQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVILTTDDP 435

Query: 421 RSEDPEKIRAE----IIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             EDP+ I AE    I H   G +E   +R EAI TAI+     D++V+AGKG +    V
Sbjct: 436 AFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKGTDQYQKV 495

Query: 476 TNGEKKMSVDCDIIREIL 493
              +     D  + R+++
Sbjct: 496 AGVDTPYPGDIAVARQVV 513


>gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
          Length = 300

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 151/304 (49%), Gaps = 37/304 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLS------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140
            +N   +VV +T +  S+ A  L  Y  H      VTGT+GK+S+A+    +Q+  Q++ 
Sbjct: 74  -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G + FQI  T T  +       TTP  + L K +      G   +++E SSHGL   
Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254
           RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S 
Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E ++           +  + +F+           + +  S++G  FDF+ P  G +QV +
Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AENIQESLQGVSFDFVTPF-GTYQVKS 294

Query: 315 ALVA 318
             V 
Sbjct: 295 PYVG 298


>gi|170017365|ref|YP_001728284.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
 gi|169804222|gb|ACA82840.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
          Length = 516

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 218/483 (45%), Gaps = 49/483 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAI--AQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           D+R ++   +FV + G       F P+ +  AQG   IV  S   +         + P  
Sbjct: 50  DTRQVEPETLFV-VKG------AFRPKYLENAQGITGIVSESQLPV---------DLPQW 93

Query: 94  VVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQ-----RSGLSSFQ 146
            V N +K LSL +   +    +N+   A TGT GK++ A     I +      + L S  
Sbjct: 94  QVTNVQKALSLLSMAFFDYPQKNLWIGAFTGTKGKTTAAYMTYNILKAATDNHTALFSTV 153

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T   +S  + + LTTP    L K +  +   G+TH+ +E SS    + R+ G++   
Sbjct: 154 DRITGPKASDRKKSDLTTPESYELFKDMRRVVDNGMTHLIMEVSSQAYLKQRVYGLRYQV 213

Query: 207 GSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAH 261
           G+F N+  DHI  + H   + Y   K+ LF+         I+ A+  +  E+M   K+ H
Sbjct: 214 GAFLNISPDHIGPNEHPNFEDYLAHKLMLFDH----SDKVIVNAESDHLSEIMTHAKKGH 269

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQVYNAL 316
           +      +    G++    +  AIH  Q   ++V+  D       +   LPG+F   NAL
Sbjct: 270 DKIYTYSNAEKGGEYTFTSQSSAIHESQ---LTVQASDLSEMAGAYRLNLPGDFNESNAL 326

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +    G     +++ L+ +  +PGR   +   + G   +VDYAH   S+  +LK  
Sbjct: 327 AALIMAALAGAKHEAMVKGLDTV-FIPGRMLSLPIPNHG-VAFVDYAHNYASMHALLKFA 384

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++    G++IVV G  G++   +R   G++  +LAD+  +T D+P+ E P+ I  EI   
Sbjct: 385 QSQYPDGKVIVVVGSPGNKGVSRRADFGRVVSELADVVYLTADDPQFESPKTIADEIAAH 444

Query: 436 I--PGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           I  P      + +RI AI  A+      D+++VAGKG +    V   ++    D  +++ 
Sbjct: 445 INNPKLDVHFEMDRIAAINQALLAARDNDIVIVAGKGEDPYQKVNGVDEPYIGDYAVVKN 504

Query: 492 ILG 494
            + 
Sbjct: 505 FVA 507


>gi|226325275|ref|ZP_03800793.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
 gi|225206623|gb|EEG88977.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
          Length = 505

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 204/472 (43%), Gaps = 50/472 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E+ +  ++ DSR +  G +F  I         ++  AI +GA A V    Y        
Sbjct: 28  EEKNVGYLTYDSREVTEGTLF--ICKGAAFKAEYLDAAIEKGAIAYVSEVKYE------- 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC----- 137
            + + P  +VD+ RK +   A + +   P   L +TG   T GKS+ A +++ I      
Sbjct: 79  TKEDVPYFLVDDIRKAMPPLAEK-FNNAPWKKLTITGIGGTKGKSTSAYYMKAIVDDYME 137

Query: 138 -----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                + + LSS  I          +++ +TTP  + L + L +    G+T   +E SS 
Sbjct: 138 ATGGKESAVLSSIDIYD----GVIKKESHITTPESVELQEHLRHAVESGITFAEMEVSSQ 193

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            L  +R+D ++   G F N+  DHI    H   + YF++K+++F     K    ++  D 
Sbjct: 194 ALKYNRVDNMQFDVGIFLNISEDHISPIEHPDFEDYFSSKLKIF----GKSRYGVVNMDA 249

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPG 308
            ++  ++K +     +VL+   +     +       +  +    V+ + FD  F   +PG
Sbjct: 250 DFADRILKES-KVCEKVLTFSTKNPEADVYGYEIQKDGHETVFMVKTELFDEEFRLTMPG 308

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V NAL      I + I    +   L +     GR E  G+  +     VDYAH   S
Sbjct: 309 LFNVENALAVIAASILLEIPKEYMHSGLLRAR-SSGRMELYGSADKNLIAVVDYAHNKLS 367

Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            E +  +I+       I+ +FGC G +   +R  +G +A   A    +T ++P  E  E+
Sbjct: 368 FEKLFSSIKDEYPDYNIVSIFGCPGKKAFIRRRDLGTVAGQYAKKVYLTAEDPGYEPVEQ 427

Query: 428 IRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I  EI      ++E  N        R EAI+ A++    + + ++ GKG+ET
Sbjct: 428 ISKEIAQ----YVEAQNCPYAMIEDRGEAIKAAMDEAEGKTIFLITGKGNET 475


>gi|332358296|gb|EGJ36122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK355]
          Length = 400

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 197/406 (48%), Gaps = 39/406 (9%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           P+L+V++ ++ +SL A   Y  HPE    +LA TGT GK++ A F  QI  +S   +   
Sbjct: 4   PVLLVNDVKQAMSLLAMEFY-DHPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALLS 62

Query: 148 GPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
              +T+   +F + + LTTP  + L K ++   S   TH+ +E SS    + R+ G+   
Sbjct: 63  TMNTTLDGETFFK-STLTTPESLDLIKMMAQALSNDRTHLIMEVSSQAYLKKRVYGLTFD 121

Query: 206 AGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            G F N+  DHI    H T + YF  K      LL   S A+I        +++K     
Sbjct: 122 VGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE---- 172

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAAG 320
             +V S+  +  F        I + Q  +    GK    +D    L G F   NA+ AA 
Sbjct: 173 --QVASM--EHDFYGADSSNTITDSQAFSFEATGKLAGHYDI--QLIGRFNQENAVAAAL 226

Query: 321 LCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            C+ +G      LE ++K      VPGR E V T   G +++VDYAH   SL  +L  ++
Sbjct: 227 ACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVVQ 281

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGI 436
               G+II++ G  G++ + +R   G +     ++ ++ T D+P  EDP  I  EI   I
Sbjct: 282 EHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASYI 341

Query: 437 PGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480
              +EK  +R EAI+ A+ +  ++ + +++AGKG +   IV  GEK
Sbjct: 342 SYPVEKIADREEAIKKALSLTEREGEAVILAGKGADAYQIV-EGEK 386


>gi|330874999|gb|EGH09148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 196

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 100/170 (58%), Gaps = 12/170 (7%)

Query: 308 GEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           G F + N L A G  +  G+D AL  +L+ L KL    GR + +G   +   + VDYAHT
Sbjct: 2   GRFNLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHT 58

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P
Sbjct: 59  PDALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESP 118

Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             I  +I  G        FIE   R +AI   I   N  DV+V+AGKGHE
Sbjct: 119 ASIFDDIRPGFAAADKVRFIE--GRGQAIAELIASANADDVVVLAGKGHE 166


>gi|257870823|ref|ZP_05650476.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
 gi|257804987|gb|EEV33809.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
          Length = 504

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 221/490 (45%), Gaps = 62/490 (12%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +  +     +S DSR   A  +F       ++ +L    A+AQG +  V    Y  ++
Sbjct: 34  PQEMNDLIFTSLSYDSRQTDANTLFFCKGAAFKESYL--ESAVAQGLQCYVSEHPY--EN 89

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR 139
            SA        ++V + R  ++  A   Y    + +  + +TGT GK+S A FV++I  +
Sbjct: 90  CSAYG------IIVTDIRAAMACIAQAFYNNPQDQLFKIGITGTKGKTSCAYFVREILAK 143

Query: 140 SG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +    ++ F     +      Q+  LTTP  + L   ++   + G+TH+ +E SS     
Sbjct: 144 TTNQKVAFFSSEENTVDGKNYQEAVLTTPETLDLYAMMAEAVANGMTHLVMEVSSQAYKT 203

Query: 197 HRLDGIKLIAGSFTNLGRDHI---------DY--------HQTQQAYFNAKMRLFEELLP 239
            R+ GI    G F N+  DHI         DY        H ++Q   N +   FE  L 
Sbjct: 204 KRVSGITYEIGIFLNISPDHIGPVEHPDFDDYLFCKRELIHNSKQMIINRQSDYFE--LL 261

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           KE+ A      A+   ++      G   +     G      K   IH+++ + + V G  
Sbjct: 262 KETCA------AHQVPLITYGQCDGDYQVLPAESGD----PKSFRIHSEKDILL-VNG-- 308

Query: 300 FDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            D+   L GEF   NA   +VAA L  A   ++  VL ++     +PGR   V     G 
Sbjct: 309 -DYQLALLGEFNHDNATAAIVAACLAGATQEEAQSVLPNV----TIPGRM-IVLEKQNGA 362

Query: 357 RIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I VDYAH   S + + +   T+   GR+I V G  G + + +RP MG+   + AD   +
Sbjct: 363 LIIVDYAHNYLSFKSLSELAHTLRPKGRLIFVTGSAGGKAESRRPDMGRALSEYADKVYL 422

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T D+P  EDP  I AEI   I  P  I  E+ +R  A+++A+     QD++++AGKG E 
Sbjct: 423 TSDDPNFEDPRAIAAEIAAAITAPTVIIEEQMDRSLAVQSAVAEAASQDIVILAGKGAEQ 482

Query: 472 VHIVTNGEKK 481
            ++  NG+K+
Sbjct: 483 -YLKVNGQKE 491


>gi|255994449|ref|ZP_05427584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
 gi|255993162|gb|EEU03251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
          Length = 505

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 217/471 (46%), Gaps = 50/471 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DS+ +  G +FV      +  +L   +AI +GA   V    Y +         N
Sbjct: 26  VSNIAYDSKKVSNGTLFVCKGAAFKKQYL--EEAIEKGACCYVSEDCYDV---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRSGLSSFQ 146
            P + V + RK +++ A R Y  HP+  L + G +G       A +++ I     L+S +
Sbjct: 75  IPQIRVGDIRKAMAVIAGRFYD-HPDRKLTLIGITGTKGKTTTAYYIKAILDTFLLNSGK 133

Query: 147 --IGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              G  S I ++     +++ LTTP    L + LS  +  G+ ++ +E SS  L  HR  
Sbjct: 134 KPAGILSGIFNYYGKDYEESSLTTPETFELFEKLSNAAENGLEYLVMEVSSQALKYHRTY 193

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+      + NL  DHI    H   + Y  +K+ LF+        A++  D  + ++ + 
Sbjct: 194 GLMFDFAGYLNLDEDHISPGEHSDFEDYKASKLLLFKAC----DVAVLNKDSEHYEDFLN 249

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFD-------FLFPL 306
              +A  +V+S   +G      + C I+ K       +      +D D       F    
Sbjct: 250 ECVDAK-KVISFSSKGLDADY-RACDINAKNGVLEFNIVYHDASRDTDEPVRKSNFTILS 307

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHT 365
            GEF + NAL+A  +   + +    + E L  +  VPGR E V   SRGGRI  VD+AH 
Sbjct: 308 SGEFNIDNALLATSIGSELNVPYEDMKEALYNVK-VPGRMEVV--KSRGGRIAIVDFAHN 364

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP---R 421
             S   + + ++      +I +VFG  G +   +R +MG IA   AD   +T+D+P   +
Sbjct: 365 KLSFIKLFEAVKKEYPDKKIAIVFGTPGGKAYDRRALMGMIAAKNADKVYITEDDPYREK 424

Query: 422 SED-PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +ED  E+IRAE +      +   NR +AI+ A E  + + ++++AGKG E 
Sbjct: 425 AEDICEEIRAEAVKYSDDIVVVLNRQDAIKRAAEETDAEWIILIAGKGIEN 475


>gi|116492429|ref|YP_804164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102579|gb|ABJ67722.1| UDP-N-acetylmuramyl tripeptide synthase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 507

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 216/498 (43%), Gaps = 65/498 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR ++ G++F    GN +  +L +  A   GA   V  + Y            T I
Sbjct: 32  ISYDSRTVKPGYMFFC-KGNFKPEYLSV--ARQNGATTYVSENEYPEG------TGMTAI 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +V + TR    L A+  Y   P+N   I+ +TGT GK+S A F   I  +   +  Q+  
Sbjct: 83  IVTNVTRAMAVLSAT--YYNFPQNDLFIIGITGTKGKTSSAYFAHSILNQKYPN--QVAL 138

Query: 150 TSTIS---------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            STI           F  D  LTTP  + L   +      G+ ++ +E SS    + R+ 
Sbjct: 139 FSTIDRIVGPKPEDQFKSD--LTTPESMNLFHDMRVAVDNGMKYLVMEVSSQAYLRDRVY 196

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+K   G F N+  DHI  + H+  + Y + K+    +L+      II AD     +V  
Sbjct: 197 GLKFDCGIFLNITPDHIGRNEHKDFEDYLHCKL----QLMVNSKRCIIDADTDRFDDVFG 252

Query: 259 RA----------------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A                 N G   L    +      +      + +     V G   D+
Sbjct: 253 AAKATTDPEQIYLFSADVENGGVDFLIQDEEDDLTSNRFTLVESSSKAEAFHVAG---DY 309

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + G++   NA  A        +   D+ L L+ +    V+PGR E +     G  ++
Sbjct: 310 DLNVAGDYNQSNATAAIIAAALADVTYQDAVLPLKSI----VIPGRMEHLNVPGHG-VVF 364

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   SL  +LK ++     G++IVV G  GD+   +R   G+   + ADIA +T D
Sbjct: 365 VDYAHNYASLHALLKFLKHQYHDGKVIVVVGSPGDKGISRRAGFGQALSEQADIAYLTTD 424

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +P  EDPE+I  +I+  I PG +E     +R +AI  AI   +++DV+V+AGKG +    
Sbjct: 425 DPAFEDPEQIIQQIMDNIKPGTVEVRQVLDRHDAIEQAIMNSSEKDVVVLAGKGEDPYQK 484

Query: 475 VTNGEKKMSVDCDIIREI 492
           V   +     D  +  E+
Sbjct: 485 VGGVDTPWPTDMGVAEEV 502


>gi|308234230|ref|ZP_07664967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|328943512|ref|ZP_08240977.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|327491481|gb|EGF23255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
          Length = 580

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 223/525 (42%), Gaps = 92/525 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIVVSSAYSLQDFSAT 85
           IN + S+S + Q   IFV        G  F P+    A+ +GA A +  + ++       
Sbjct: 60  INGLDSNSLYSQKHHIFVC------KGAAFKPEYLQDALKKGATAYMCDNTHA-----QA 108

Query: 86  IRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTG-------TSGKSSVASFVQQ 135
           +R+  P    +VV+N R  ++  A   +G HP+  L   G       T+    + S +  
Sbjct: 109 LRTYCPHAVQIVVNNIRLAMAQAAPLAWG-HPDTRLITVGITGTKGKTTTACMIKSILDA 167

Query: 136 ICQRSGLSSFQ----IGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             QR  + + Q    IG   +I+++     +++  TTP      + L   +  G+TH+ +
Sbjct: 168 RAQRKHICTSQGKSPIGLMGSITTYDGILNEESTNTTPEAPDFWRHLHNAAESGITHMVM 227

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAI 245
           E SS  L  HR+DG+ L    F N+  DHI    H T + YF +K+ +F       + A+
Sbjct: 228 EISSQALKHHRVDGLHLDVALFLNISPDHISKVEHPTFEDYFLSKLMIFS----MANAAV 283

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV-----------GYQGKFIHLKKV------------ 282
           +  D  + + +   AH   C  L V            Y+ +F+  KKV            
Sbjct: 284 MNLDADHFEAIYAHAH--ACSPLLVCGRVHAQRRLEAYETQFLSDKKVASTLKAALNRTL 341

Query: 283 -------------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                        C +        +   +  DF  PL G F V NAL A      + +++
Sbjct: 342 PADIAAHDIRPQGCGLQFSCDEAHNANAQQRDFFVPLHGTFNVDNALCAVACADLLHVNT 401

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388
           + + + L   HV  GR EF+ T+++  +  VDYAH   S      ++       +II +F
Sbjct: 402 SDIQQGLANTHVA-GRMEFIPTHTQNIQGIVDYAHNKLSFRCFFSDLAHEFPHYKIIALF 460

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGN 444
           G  G +   +R  + + A   AD  ++T+++P  E  + I  E+   +P     +IE  N
Sbjct: 461 GAPGGKAFDRRRDLVEEAAKWADTIMLTEEDPGHERVQDICNEMAKHMPKGQKYYIE-CN 519

Query: 445 RIEAIRTAIEMLN---KQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           R  AI  A+E+ N    + ++ + GKG ET    T  E+   V C
Sbjct: 520 RAAAIEKAVELANCSQAKTLICMLGKGDET----TQHEQDRYVSC 560


>gi|260662527|ref|ZP_05863422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
 gi|260553218|gb|EEX26161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
          Length = 516

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 131/498 (26%), Positives = 219/498 (43%), Gaps = 45/498 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +R+     V  +S+ +Q+  +F       KED   ++ +AI +GA A V   +Y      
Sbjct: 30  YRQHFFYHVEYNSKLVQSETLFFCKGAAFKED---YLNEAIDRGATAYVAEQSY------ 80

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSG 141
              ++    L+V N ++ ++L ++  YG    ++ A+  TGT GK+S A F         
Sbjct: 81  ---QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGT 137

Query: 142 LSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                +  T   S    D   ++LTTP  + L + L      G+TH+ +E SS      R
Sbjct: 138 DDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDR 197

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +    G F N+  DH+   Q +   F   +   E+LL   S  ++     + +EV +
Sbjct: 198 VYSLHFGIGVFLNISSDHVG--QNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQ 255

Query: 259 RAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK----DFDFLFP 305
            A    A  ++   G       L     I        N Q   +S  G     D ++   
Sbjct: 256 AAKVSTAPDKIYLFGEASSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSS 315

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G++ V NA  AA      G+    + E   ++H+  GR E + T    G +YVDYAH 
Sbjct: 316 VAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIA-GRMEVIRTQEH-GTVYVDYAHD 373

Query: 366 SNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNP 420
             S++ +L  ++         +I VV G  G++   +RP +GK +A +  +  I+T D+P
Sbjct: 374 YASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVILTTDDP 433

Query: 421 RSEDPEKIRAE----IIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             EDP+ I AE    I H   G +E   +R EAI TAI+     D++V+AGKG +    V
Sbjct: 434 AFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKGTDQYQKV 493

Query: 476 TNGEKKMSVDCDIIREIL 493
              +     D  + R+++
Sbjct: 494 AGVDTPYPGDIAVARQVV 511


>gi|81427895|ref|YP_394894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564766|sp|Q38YZ5|MURE_LACSS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|78609536|emb|CAI54582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 513

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 199/443 (44%), Gaps = 61/443 (13%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ-----RSGLSS 144
           L+V N +K +++ ++  Y  +P++   I+A TGT GK++ + F Q I Q     ++ L S
Sbjct: 84  LIVTNVQKAMAVLSAAFY-DYPQDDLFIVAYTGTKGKTTASYFTQSILQDATNKKTALFS 142

Query: 145 F---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                +GP      F  D  LTTP  + L   +      G+TH+ +E SS    ++R+ G
Sbjct: 143 TIDRVLGPKPE-DRFKSD--LTTPESLDLFHDMRQAVENGMTHLVMEVSSQAYKKNRVYG 199

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL-------------------FEELLPK 240
           +    G F N+  DH+  + H   + Y + K++L                   +      
Sbjct: 200 LTFDVGFFLNISPDHVGPNEHPNFEDYLHCKLQLLVNSRHCVINAQTQNFGDVYAAATTT 259

Query: 241 ESPAIIY--ADDAYSK----EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             P  IY  AD +Y       +  R  N    +     + +F    KV A+ +K+ + + 
Sbjct: 260 TEPENIYLFADTSYQPAQPVNIDFRFENQAMTLA----ESRF----KVTAV-SKKAIQLG 310

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V G   D+   L G+F   NA  A       G D     + + +L + PGR E +     
Sbjct: 311 VSG---DYQLRLIGDFNESNATAAIIGAALGGADLIAAQQGIRRLQI-PGRMETLAVEGH 366

Query: 355 GGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G ++YVDYAH   S++ +L  + +     +++VV G  GD+   +R    ++  + AD A
Sbjct: 367 G-QVYVDYAHNYASMKALLSFLQKEYNQPKLLVVVGSPGDKGVSRRAGFAQVLNEYADRA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I+T D+P  EDP  I AEI+ GI         + +R  AI+ AIE     D++V+A KG 
Sbjct: 426 ILTTDDPGYEDPATIAAEILAGIDQDKVDTTVEIDRATAIKQAIEESQPGDIVVLAAKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           +    V   +     D  I +++
Sbjct: 486 DAYQKVRGVDTPYPTDMVIAKQV 508


>gi|331091598|ref|ZP_08340434.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403625|gb|EGG83181.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 508

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 213/464 (45%), Gaps = 42/464 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           I +++ DS+ +    +F+   +  KE+   ++ +A+  GA   +    Y L +       
Sbjct: 35  IEQLTFDSKKVTENTLFICKGMAFKEE---YLKEAVKNGAVCYISEQKYELDE------- 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P ++V + RK + + A++ + +  +  N++ + GT GKS+   +++ I     L++  
Sbjct: 85  DVPYILVKDIRKAMPVLANKFFNEAWKELNVIGIGGTKGKSTSVYYMKSILD-DYLAANG 143

Query: 147 IGPTSTISSF-------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              ++ ISS          ++ +TTP  + L        + G+  V +E SS  L   R+
Sbjct: 144 KKESAVISSIDIYDGVEKIESHITTPEAVELHGYFRNAVNCGMEFVEMEVSSQALKYGRV 203

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           + +      F N+  DHI    H+  + YF++K+ +F+    K   A++  D  +S  ++
Sbjct: 204 NEMMFDVAVFLNICEDHISPIEHKDFEDYFSSKLLIFQ----KTKTAVVNLDADFSDRIL 259

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFD--FLFPLPGEFQVYN 314
           + A  A  +V+++  + +         IH +   TI +V   +FD  F   +PG F V N
Sbjct: 260 EAAQCAP-KVVTISTKNENADFYAY-NIHKEGDGTIFNVRCAEFDKEFELTMPGFFNVEN 317

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL    +     I    +   L+K     GR E   ++       VDYAH   S E +  
Sbjct: 318 ALATIAVANQFNIPVEFMYSGLKKARS-SGRMELSTSDDNKIIAVVDYAHNKLSFEKLFS 376

Query: 375 NIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +I+     R II +FGC G +   +R  +G IA   A    +  ++P  E  E+I  +I 
Sbjct: 377 SIKEEYPDREIISIFGCPGKKAFTRRRDLGTIAGKYAKKVYLAAEDPGYEPVEEISRDIA 436

Query: 434 -----HGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 G P   IE  +R EAI+ AIE +    +L++ GKG+ET
Sbjct: 437 EYVEAQGCPYEMIE--DRGEAIKKAIESVENPSILLITGKGNET 478


>gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 293

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 30/309 (9%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESP 243
            SSH L Q R+ G       F NL +DH+DYH T   Y NAK  LF +L           
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA S   M+ A  A      +  Q  F              + I+  G  FD  
Sbjct: 236 AVLNADDAESVR-MQTATAAHVITFGIKQQADF----------KASNIQITSHGSTFDLT 284

Query: 304 FPLPGEFQV 312
            P+ GEF V
Sbjct: 285 TPV-GEFTV 292


>gi|125575608|gb|EAZ16892.1| hypothetical protein OsJ_32369 [Oryza sativa Japonica Group]
          Length = 770

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 123/531 (23%), Positives = 244/531 (45%), Gaps = 63/531 (11%)

Query: 13  ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+     ++  +  V  D+  + AG ++V +    E+G   + +A  +GA 
Sbjct: 229 ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV---GEEGLAGLTEADKRGAV 285

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A+V        D   T+     +++VD+    L +  + LY +  ++  ++ V GT G +
Sbjct: 286 AVVADQTV---DIEGTLACRA-LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDGVT 341

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRL-----TTPSPIYLAKALSYLSSQG 181
           + A  V+ + +  G+ +  +G    + ++A  +N+L      +  PI + + ++ +   G
Sbjct: 342 TTAHLVRAMYEAMGVRTGMVG---VLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
                +EA++ G+    +D  I       TN+     +   T + Y N+   LF  ++ P
Sbjct: 399 AEAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEG 297
           +    ++  DD  S             V++  ++ K   +H  K      + +V +    
Sbjct: 459 ERHRKVVNIDDP-SAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPH 517

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L G   +YN L +  + +A+G     +++ +E++  +PGR E +      G 
Sbjct: 518 GILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFG- 576

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGK 404
           + VD+A T  SL  +L  ++ +   RI+             VV GC G+R++GKRP+M K
Sbjct: 577 VIVDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTK 636

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---------------GNRI--- 446
           +A + +D+ ++T DNP +EDP  I  +++ G+   +E+               G+RI   
Sbjct: 637 VAAEKSDVVMLTSDNPANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLH 696

Query: 447 ----EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                A+R A+ M  + DV+V+ GKG++T  I  + +K+   D +  RE L
Sbjct: 697 DIRRVAVRAAVAMGEQGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 746


>gi|227495120|ref|ZP_03925436.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831572|gb|EEH63955.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 486

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 223/487 (45%), Gaps = 53/487 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +VS +S+ +  G +FV      +    ++ +AI  GA A +   AY +   +A I+    
Sbjct: 30  QVSYNSKKVIPGALFVC--KGAKFNVAYLEEAIENGALAYISEVAYPVA--AAWIQ---- 81

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQ----RSGLSS 144
              V + R  +   A+  Y   P     +TG +G    ++   F+Q+I       +G +S
Sbjct: 82  ---VKDIRVAIPKLANAFYTT-PFAAFQLTGITGTKGKSTTTIFLQRILDTYLANTGKTS 137

Query: 145 FQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              G  S+I+++     +++ LTTP P+ L +         +  V++E SS GL  HR+ 
Sbjct: 138 ---GIISSINTYDGIVNEESSLTTPEPLELFEHFHNARQSALPFVTMEVSSQGLKYHRVG 194

Query: 201 GIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+    G F N+ +DHI    H   + YF +K+ LF+++       +I  D A    V+ 
Sbjct: 195 GVLFDVGVFLNIDKDHISAIEHPDFEDYFQSKLMLFKQV----KHLVINLDSAEIDRVLA 250

Query: 259 R--AHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVY 313
              AH     + +      F      CA +   +   +   V G++ D    + G F V 
Sbjct: 251 AIPAHVTVTTISASNPAADF------CATNISTDGYSIKFQVSGEEID--LGISGLFNVE 302

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMI 372
           NAL A  +    GI    + E L ++  VPGR E F+G N     I VDYAH   S E +
Sbjct: 303 NALAAIAVARHYGIPFTAIKEALSEIR-VPGRMELFIGENPNLVTI-VDYAHNRLSYERL 360

Query: 373 LKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            ++      G + I++FGC G +   +R  + +++ + AD  I+T ++P +E   +I A+
Sbjct: 361 FQSCEESFPGFKKIIIFGCPGHKALNRRVDLAEVSDEYADHIILTMEDPNAEPVSEISAD 420

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I   +   P  I   +R+E+   A+ ++  + V++  GKG ET H +         D +I
Sbjct: 421 IAKNVKHTPVSI-VDDRVESFAYALSLVEGKTVILFVGKGDETTHKIHGKAVPYPSDVEI 479

Query: 489 IREILGL 495
           +R  L L
Sbjct: 480 VRGALNL 486


>gi|116630287|ref|YP_815507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|282852925|ref|ZP_06262266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
 gi|116095869|gb|ABJ61021.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus gasseri ATCC
           33323]
 gi|282556033|gb|EFB61654.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
          Length = 523

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 217/509 (42%), Gaps = 71/509 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+N +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 33  KMNYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               LVV +  K ++L ++  Y + P++   ++A TGT GK++ A F++ +     L   
Sbjct: 84  GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGM-----LDQI 137

Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             G T+  SS              + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 138 NGGRTALFSSVDDIVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238
           ++R+ G+    G F N+  DHI  + H     Y + K++L               F+E+ 
Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIY 257

Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +    P  IY  A + +    +K+  +   R  SV    K    K  CA    +++ 
Sbjct: 258 AAATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASEKAKKLP 315

Query: 293 ISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           I+      D+   + G+F   N   A++ AGL      + A  + H+     +PGR E +
Sbjct: 316 IAG-----DYTLQMIGDFNEMNGTAAIIGAGLAGESYAECAKGIRHV----TIPGRMETL 366

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            + + G  I VDYAH   S+  ++  + R   + +IIVV G  GD+   +RP   +    
Sbjct: 367 PSKNHGTVI-VDYAHNKASMIALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTA 425

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A+ A +T D+P  EDP  I  EI  GI         + +R +AI  AI M NK D++++
Sbjct: 426 YANKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLI 485

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKG +    +   +     D  +   ++
Sbjct: 486 CGKGADPFQKIRGVDTPYPTDIKVAESVI 514


>gi|238853708|ref|ZP_04644075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300362910|ref|ZP_07059080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
 gi|238833644|gb|EEQ25914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300352960|gb|EFJ68838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
          Length = 523

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 217/509 (42%), Gaps = 71/509 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+N +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 33  KMNYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               LVV +  K ++L ++  Y + P++   ++A TGT GK++ A F++ +     L   
Sbjct: 84  GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGM-----LDQI 137

Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             G T+  SS              + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 138 NGGRTALFSSVDDIVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238
           ++R+ G+    G F N+  DHI  + H     Y + K++L               F+E+ 
Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIY 257

Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +    P  IY  A + +    +K+  +   R  SV    K    K  CA    +++ 
Sbjct: 258 AAATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASEKAKKLP 315

Query: 293 ISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           I+      D+   + G+F   N   A++ AGL      + A  + H+     +PGR E +
Sbjct: 316 IAG-----DYTLQMIGDFNEMNGTAAIIGAGLAGESYAECAKGIRHV----TIPGRMETL 366

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            + + G  I VDYAH   S+  ++  + R   + +IIVV G  GD+   +RP   +    
Sbjct: 367 PSKNHGTVI-VDYAHNKASMIALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTA 425

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A+ A +T D+P  EDP  I  EI  GI         + +R +AI  AI M NK D++++
Sbjct: 426 YANKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLI 485

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKG +    +   +     D  +   ++
Sbjct: 486 CGKGADPFQKIRGVDTPYPTDIKVAESVI 514


>gi|255280636|ref|ZP_05345191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255268573|gb|EET61778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 500

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 225/506 (44%), Gaps = 68/506 (13%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P+ W       V+ DSR +  G +F+        G  F+P       E ++ + AY    
Sbjct: 28  PVTW-------VTCDSREVIPGTLFIC------KGAEFLP-------EYLLEAVAYGCIA 67

Query: 82  FSATIRSNTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
           + +  R  TP      VV + R+ +++ ++  +   PE   +  +TGT GK++ A ++  
Sbjct: 68  YMSEERWGTPKTVRGFVVKDIRRAMAVVSAAFFEYEPEALKLTGITGTKGKTTTAWYL-- 125

Query: 136 ICQRSGLSSFQ-------IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTH 184
              R+ L  +Q        G  S++ +F  + R    +TTP    L + ++ + + G  +
Sbjct: 126 ---RAMLDEWQQEKGKKKTGLISSVENFDGNCRSDAVMTTPEAPVLYELIARVRAAGSEY 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           +++E SS  L  HR+DG+    G F N+  DHI    H+  + YF +K+ L  +      
Sbjct: 183 MTIETSSQALKYHRVDGLHFQVGIFLNISEDHISPGEHRDFEDYFQSKLSLLRQC----G 238

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            A +  D  Y+++++K A  A  RV++ G +    +  + +     KQ   ++       
Sbjct: 239 TACVNLDSDYAQQILKEARKAQ-RVVTFGQHHEAQLRYRILPEKDGKQTFEVTCPQFTEQ 297

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   + G F + NA+ A       G+    + + L +   VPGR E   +  +     VD
Sbjct: 298 FSLKMRGSFNIENAVAAIAAAQVYGVPVHCMQKALAET-TVPGRMEVFESGDKKVCAIVD 356

Query: 362 YAHTSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAH   S + + + +     +  RII VFGC G +   +R  +G +A   +D   VT D+
Sbjct: 357 YAHNQLSFQKLFQTVFQEYRSFHRIITVFGCPGGKALNRRRELGVLAGMFSDYVYVTSDD 416

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAIEML---NKQDVLVVAGKG 468
           P  ED  +I  E    +  ++E          +R  AIR+A+E      ++ +++V G+G
Sbjct: 417 PGMEDESRIADE----VGSYVEMAGGACDCIADRRIAIRSALEKAGSGTEKTLVLVLGRG 472

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            E    +         D +I+RE++ 
Sbjct: 473 SEKFQRIGRRLYAYPTDANIVRELMA 498


>gi|199597925|ref|ZP_03211350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|258507252|ref|YP_003170003.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
 gi|199591182|gb|EDY99263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|257147179|emb|CAR86152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus GG]
 gi|259648618|dbj|BAI40780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
          Length = 517

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 197/436 (45%), Gaps = 46/436 (10%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L+V N  K +++ ++  +  +P++   ++A TGT GK++ A F + I   +      +  
Sbjct: 85  LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTAAYFTEAILNEARPRHIALFS 143

Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           T  T+     D R    LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257
             G F N+  DHI  + H T   Y + K+    +LL      +I A     D  Y+    
Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304
                +     S G++ K   +       +++          V ++ +    +    +  
Sbjct: 260 TTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319

Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L G+F   NA   ++ AGL    G+D++  +  + K+ + PGR E       G  +YVD
Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHFQVPGHG-TVYVD 374

Query: 362 YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S++ +L  + R+    R++VV G  GD+   +RP   K+  +LA  A +T D+P
Sbjct: 375 YAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFLTTDDP 434

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             EDP  I  EI   I     K +++    EAI  AI+    +DV+VVAGKG +    + 
Sbjct: 435 GYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADPYQKIR 494

Query: 477 NGEKKMSVDCDIIREI 492
                   D  +++E+
Sbjct: 495 GVNTPWPTDMAVVKEV 510


>gi|229550849|ref|ZP_04439574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|258538439|ref|YP_003172938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|229315799|gb|EEN81772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|257150115|emb|CAR89087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 517

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 197/436 (45%), Gaps = 46/436 (10%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L+V N  K +++ ++  +  +P++   ++A TGT GK++ A F + I   +      +  
Sbjct: 85  LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTAAYFTEAILNEARPRHIALFS 143

Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           T  T+     D R    LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257
             G F N+  DHI  + H T   Y + K+    +LL      +I A     D  Y+    
Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304
                +     S G++ K   +       +++          V ++ +    +    +  
Sbjct: 260 TTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319

Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L G+F   NA   ++ AGL    G+D++  +  + K+ + PGR E       G  +YVD
Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHFQVPGHG-TVYVD 374

Query: 362 YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S++ +L  + R+    R++VV G  GD+   +RP   K+  +LA  A +T D+P
Sbjct: 375 YAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFLTTDDP 434

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             EDP  I  EI   I     K +++    EAI  AI+    +DV+VVAGKG +    + 
Sbjct: 435 GYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADPYQKIR 494

Query: 477 NGEKKMSVDCDIIREI 492
                   D  +++E+
Sbjct: 495 GVNTPWPTDMAVVKEV 510


>gi|213423828|ref|ZP_03356808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 141

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDN
Sbjct: 2   VDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDN 61

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PR+E+P  I  +I+ G+   ++ G       R EA+  AI      DV+++AGKGHE   
Sbjct: 62  PRTEEPRAIINDILAGM---LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQ 118

Query: 474 IV 475
           IV
Sbjct: 119 IV 120


>gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 255

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 15/240 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA A+V++ A   QD     A
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77

Query: 85  TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   R+   +++V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q 
Sbjct: 78  KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL 
Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K    ++ ADD   +E
Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTK--AQVLNADDEVGRE 255


>gi|213585692|ref|ZP_03367518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 338

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 165/341 (48%), Gaps = 18/341 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P++ +
Sbjct: 4   DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYL 63

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
               + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S  +G     
Sbjct: 64  SQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNG 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  FTNL
Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNL 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            RDH+DYH     Y  AK  L+         AI+ ADD    EV +R   +    ++V  
Sbjct: 184 SRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASLPDAVAVSM 237

Query: 273 QGKF---IH---LKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +G      H   LK     ++ + VTI  +    + +    L G F V N L+A    +A
Sbjct: 238 EGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLLLALATLLA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +G     +L+   +L  V GR E V T      + VDYAHT
Sbjct: 298 LGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHT 337


>gi|328954771|ref|YP_004372104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
 gi|328455095|gb|AEB06289.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
          Length = 518

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 139/499 (27%), Positives = 222/499 (44%), Gaps = 57/499 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIVVSS--AYSLQDFS 83
           +  +S DSR  +   +FV        G  F P     AI +GA A +  +  A    D S
Sbjct: 40  VRGMSIDSRATEMDNLFVC------KGAAFKPAYLTAAIRRGASAFLCQTQAAAPACDLS 93

Query: 84  ATIRS-----NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQ 135
           A         +TP L+V + R  ++L A  +YG HP+  L + G +G     +    ++ 
Sbjct: 94  APAELAAAAPDTPGLIVSDLRASMALIAPIIYG-HPDRALRIVGVTGTKGKTTVTFMLRS 152

Query: 136 ICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I + +G+    +G         + ++  TTP    L + L      G + + +E SS  L
Sbjct: 153 ILRAAGMEPSMVGSIEVDDGVERHESHNTTPEAPDLWRHLRNTVDSGRSVMIMEVSSQAL 212

Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              R+ GI L  G F N+G DHI    H   + Y  +K+R+F++       A++  D  +
Sbjct: 213 KYDRVLGITLDVGCFLNIGSDHISPIEHPNFEDYLASKLRIFDQ----SETAVVNLDTDH 268

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------- 303
             EV+KRA  AG  V         I  ++  A     Q++++ E   FD +         
Sbjct: 269 LVEVLKRAQTAGKLVT--------ISSRRTDADLRADQISVASEHIGFDIVERARRHEIA 320

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVD 361
             + G F V NAL AA L   +G+D   +   L +  V PGR E     S  GRI   VD
Sbjct: 321 LGMSGLFNVDNALAAAALARELGVDYTAIATGLSRARV-PGRMERF--RSPDGRIVSLVD 377

Query: 362 YAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S  ++ ++I +    R +I VFG  GD+   +R  + +IA   AD+ I T+D+P
Sbjct: 378 YAHNELSFRLLFESIESEYPDRYVIAVFGAPGDKAFDRRHELPRIAGKSADLLIYTEDDP 437

Query: 421 RSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHI 474
             E  E I A++    P    F    NR +A+  A E     +   ++++  KG E    
Sbjct: 438 GGERVEDICAQLADNTPTGTAFEIVVNREQAVERAFEAARSHEGPALVLLLAKGDEHRQR 497

Query: 475 VTNGEKKMSVDCDIIREIL 493
            ++G  +++ D ++ R  L
Sbjct: 498 RSDGYARIASDLELARRHL 516


>gi|213418873|ref|ZP_03351939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 300

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S 
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K 
Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD
Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD 243


>gi|226507610|ref|NP_001141424.1| hypothetical protein LOC100273534 [Zea mays]
 gi|194704536|gb|ACF86352.1| unknown [Zea mays]
          Length = 540

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 225/495 (45%), Gaps = 41/495 (8%)

Query: 13  ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+     ++  +  V  D+  + AG +FV +    EDG   + +A  +GA 
Sbjct: 12  ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV---GEDGLAGLTEADKRGAV 68

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A+V     +++   A       +++VD+    L +  + LY +   N  I+ VTGT G +
Sbjct: 69  AVVADQDLNIEGTLAC----RALVIVDDILTALRVLPACLYSRPSMNMAIIGVTGTDGVT 124

Query: 128 SVASFVQQICQRSGLSSFQIG--PTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTH 184
           +    V+ + +  G+ +  +G   T   SS   D R    S PI   K ++ +   G   
Sbjct: 125 TTTHLVKAMYEAMGVRTGLVGVLGTYAFSSNKLDARPDASSDPIAAQKLMATMLHNGTEA 184

Query: 185 VSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKES 242
           V +E  + G+    +D  I       TN+     +   T + Y +    LF  ++ P+  
Sbjct: 185 VVLEKGTDGMPPSGVDSEIDYDIAVLTNVRHTDEENGMTYEEYMSRMASLFSRMVDPERH 244

Query: 243 PAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             ++  DD  +     +  H+      S   +   +H  K      + +V +       +
Sbjct: 245 RKVVNIDDPSAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGILE 304

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   +Y+ L    + IA+G     ++  +E++  +PGR E +      G + VD
Sbjct: 305 ISSGLLGRDNIYSILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELIDEEQAFG-VIVD 363

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +A T  +L  +L  +R +   RI+ V GC G++++GKRP+M KIA D +D+ ++T DNP 
Sbjct: 364 HARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSDNPA 423

Query: 422 SEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNKQ 459
           +EDP  I  +++ G+   +E+               G+R+        A+R A+ M  + 
Sbjct: 424 NEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEQG 483

Query: 460 DVLVVAGKGHETVHI 474
           DV+V+ GKG++T  I
Sbjct: 484 DVVVITGKGNDTYQI 498


>gi|227889301|ref|ZP_04007106.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850103|gb|EEJ60189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 509

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 218/507 (42%), Gaps = 67/507 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 19  KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 69

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ-----RS 140
               LVV +  K ++L ++  Y + P++   ++A TGT GK++ A F++ +       R+
Sbjct: 70  GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRT 128

Query: 141 GLSSFQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            L S     +GP       A    LTTP  + L + +      G+TH+ +E SS    ++
Sbjct: 129 ALFSSVDDIVGPKPEDKFKAS---LTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKN 185

Query: 198 RLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELLPK 240
           R+ G+    G F N+  DHI  + H     Y + K++L               F+E+   
Sbjct: 186 RVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA 245

Query: 241 ES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +    P  IY  A + +    +K+  +   R  SV    K    K  CA    +++ I+
Sbjct: 246 ATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASDKAKKLPIA 303

Query: 295 VEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 D+   + G+F   N   A++ AGL      + A  + H+     +PGR E + +
Sbjct: 304 G-----DYTLQMIGDFNEMNGTAAIIGAGLAGENYEECAKGIRHV----TIPGRMEALPS 354

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            + G  I VDYAH   S+  ++  + R   + +IIVV G  GD+   +RP   +     A
Sbjct: 355 KNHGTVI-VDYAHNKASMMALMSFMQREFNTPKIIVVVGAPGDKGVSRRPGFSESLTAYA 413

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D A +T D+P  EDP  I  EI  GI         + +R +AI  AI M +K D++++ G
Sbjct: 414 DKAFLTTDDPGFEDPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICG 473

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    +   +     D  +   ++
Sbjct: 474 KGADPYQKIRGVDTPYPTDIKVAESVI 500


>gi|268320124|ref|YP_003293780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
 gi|262398499|emb|CAX67513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
          Length = 523

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 218/507 (42%), Gaps = 67/507 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 33  KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ-----RS 140
               LVV +  K ++L ++  Y + P++   ++A TGT GK++ A F++ +       R+
Sbjct: 84  GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRT 142

Query: 141 GLSSFQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            L S     +GP       A    LTTP  + L + +      G+TH+ +E SS    ++
Sbjct: 143 ALFSSVDDIVGPKPEDKFKAS---LTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKN 199

Query: 198 RLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELLPK 240
           R+ G+    G F N+  DHI  + H     Y + K++L               F+E+   
Sbjct: 200 RVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA 259

Query: 241 ES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +    P  IY  A + +    +K+  +   R  SV    K    K  CA    +++ I+
Sbjct: 260 ATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASDKAKKLPIA 317

Query: 295 VEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 D+   + G+F   N   A++ AGL      + A  + H+     +PGR E + +
Sbjct: 318 G-----DYTLQMIGDFNEMNGTAAIIGAGLAGENYEECAKGIRHV----TIPGRMEALPS 368

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            + G  I VDYAH   S+  ++  + R   + +IIVV G  GD+   +RP   +     A
Sbjct: 369 KNHGTVI-VDYAHNKASMMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYA 427

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D A +T D+P  EDP  I  EI  GI         + +R +AI  AI M +K D++++ G
Sbjct: 428 DKAFLTTDDPGFEDPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICG 487

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    +   +     D  +   ++
Sbjct: 488 KGADPYQKIRGVDTPYPTDIKVAESVI 514


>gi|42519760|ref|NP_965690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41584050|gb|AAS09656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus johnsonii NCC 533]
 gi|329668011|gb|AEB93959.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 523

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 218/507 (42%), Gaps = 67/507 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 33  KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ-----RS 140
               LVV +  K ++L ++  Y + P++   ++A TGT GK++ A F++ +       R+
Sbjct: 84  GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRT 142

Query: 141 GLSSFQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            L S     +GP       A    LTTP  + L + +      G+TH+ +E SS    ++
Sbjct: 143 ALFSSVDDIVGPKPEDKFKAS---LTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKN 199

Query: 198 RLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELLPK 240
           R+ G+    G F N+  DHI  + H     Y + K++L               F+E+   
Sbjct: 200 RVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA 259

Query: 241 ES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +    P  IY  A + +    +K+  +   R  SV    K    K  CA    +++ I+
Sbjct: 260 ATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASDKAKKLPIA 317

Query: 295 VEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 D+   + G+F   N   A++ AGL      + A  + H+     +PGR E + +
Sbjct: 318 G-----DYTLQMIGDFNEMNGTAAIIGAGLAGENYEECAKGIRHV----TIPGRMEALPS 368

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            + G  I VDYAH   S+  ++  + R   + +IIVV G  GD+   +RP   +     A
Sbjct: 369 KNHGTVI-VDYAHNKASMMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYA 427

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D A +T D+P  EDP  I  EI  GI         + +R +AI  AI M +K D++++ G
Sbjct: 428 DKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSDKDDIVLICG 487

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    +   +     D  +   ++
Sbjct: 488 KGADPYQKIRGVDTPYPTDIKVAESVI 514


>gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
 gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
          Length = 468

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 172/373 (46%), Gaps = 23/373 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V+ DSR + AG  FVAI G ++DG+ +I  A+ QGAE +     Y+ ++        
Sbjct: 7   ISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVV-----YTEREID---HRE 58

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQI 147
             ++ VDN RK L+  A+++Y    E++  V  T       +   ++++    G ++  I
Sbjct: 59  VQVVKVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGLI 118

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +    ++  LTTP    +   +  +    V   ++E SSHG+  HR++G+    
Sbjct: 119 GTVKIKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHRVEGLDFDI 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             +TNL +DH+D H+  + Y   K  LF++   +ES A+I  DD Y+  +M         
Sbjct: 179 VVYTNLTKDHLDLHEDFEDYLATKKELFKQ-AGEESTALINLDDEYADRIMS---GLSAE 234

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALVAAGL 321
           V++ G+  +   ++   A ++       +E      + F+    L G   +YNAL AA +
Sbjct: 235 VITYGFSDR-ADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAV 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  G+    +   L++ +    R E +  +     I  D AH   +   + + I+ +  
Sbjct: 294 GLIYGLSVEEIKAQLKEFNPFFRRLEVIYDDKF--TIIDDCAHNPGNYRAVFETIKELDY 351

Query: 382 GRIIVVFGCGGDR 394
            R+ ++    G+R
Sbjct: 352 DRLYIINAIRGNR 364


>gi|322411195|gb|EFY02103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 394

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 186/403 (46%), Gaps = 39/403 (9%)

Query: 94  VVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +V + +K +SL A   Y  +P++   +L  TGT GK++ A F   I + S   +      
Sbjct: 1   MVTDIKKAMSLIAMAFY-DNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMN 59

Query: 151 STIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           +T+   +F + ++LTTP  + L   ++     G+TH+ +E SS      R+ G+    G 
Sbjct: 60  TTLDGKTFFK-SQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGV 118

Query: 209 FTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---SKEVMKRAHNA 263
           F N+  DHI    H T + YF  K  L E      +  I    D +   + +V ++ H  
Sbjct: 119 FLNISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFLFLADQVAEQEH-- 173

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAAG 320
                       F        I   Q  +    G+    +D    L G F   NA+ A  
Sbjct: 174 -----------AFYGALSDNQITTSQAFSFEANGQLAGHYDI--QLIGHFNQENAMAAGL 220

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            C  +G   A + + + K  V PGR E V T +   +++VDYAH  +SLE +L  +    
Sbjct: 221 ACFRLGASLADIQKGIAKTRV-PGRME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQ 278

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGF 439
           +G ++++ G  G++ + +R   G +     ++ ++ T D+P  EDPE I  EI   I   
Sbjct: 279 TGNLVLILGAPGNKGESRRADFGTVINQHPNLTVILTADDPNFEDPEDISQEIASHITRP 338

Query: 440 IE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEK 480
           I+   +R +AI+ A+ +    +D +++AGKG +   IV  GEK
Sbjct: 339 IDIVSDREQAIQKAMSLCQGPEDAVIIAGKGADAYQIV-KGEK 380


>gi|330892872|gb|EGH25533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 172

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 86/144 (59%), Gaps = 7/144 (4%)

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L+ L KL    GR + +G       + VDYAHT ++LE +L+ +R    GR++ +FGCG
Sbjct: 1   MLKVLPKLEGPVGRMQRLGGCRTKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCG 60

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRI 446
           GDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I  G        FIE   R 
Sbjct: 61  GDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDIRPGFAAADKVRFIE--GRG 118

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHE 470
           +AI   I   N  DV+V+AGKGHE
Sbjct: 119 QAIAQLIASANADDVVVLAGKGHE 142


>gi|319944703|ref|ZP_08018967.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741952|gb|EFV94375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 679

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 23/213 (10%)

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           ++H +QQ   ++          + G F + NAL AAG   ++G +   ++E L +LH VP
Sbjct: 434 SVHGRQQRLQAMFRNVATLRLNVLGRFNMENALAAAGAWRSLGWNFPAIVEGLHQLHPVP 493

Query: 344 GRFEFVG------------------TNSRGGRIYVDYAHTSNSLEMILKNIRTITS---G 382
           GR E VG                  +++    + VDYAHT ++L  +L  +R I     G
Sbjct: 494 GRMEIVGLPAAQVSDAGEAAPAAAISSTACPLVVVDYAHTPDALTNVLAALRDIAGQRGG 553

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFI 440
           ++  VFG GG+RD+GKRP M +    +AD  +VT DNPR EDP +I A++  G+  P + 
Sbjct: 554 QLCCVFGAGGNRDRGKRPEMARAVEAVADRVVVTSDNPRDEDPAQIIADVCQGLSKPAWR 613

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            + +R  AI  AI      DV+++AGKG ET  
Sbjct: 614 TEADRRVAIDAAIAQAAPADVVLIAGKGRETTQ 646



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 127/323 (39%), Gaps = 92/323 (28%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA------------------QGAEAIVVSSA 76
           SDSR +  G  F A+ G ++DG  FI QA+                     AE  VV + 
Sbjct: 33  SDSRRVGKGDAFFALHGRRQDGSTFIAQAVQQGAAAVVVAIPAQACQAEDAAEGDVVQAE 92

Query: 77  YS----------LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGT 123
           ++          L    A I+   P+  V      L   A   Y  HP  +L   AVTGT
Sbjct: 93  HAACGNFDYFKNLPTLPAGIQ--VPVCYVPCLGSQLGALADEYY-DHPSQVLDVVAVTGT 149

Query: 124 SGKSS----VASFVQQICQRSGLS-----SFQIGPTSTISS-----FA------------ 157
           +GK+S    +A  V     R+G +     +    P ++ S+     FA            
Sbjct: 150 NGKTSTTHWIAQGVNDRLARTGDAQAVDANTPSRPAASASTQRPAEFAGLVIALDGDADA 209

Query: 158 --QDNR---------------------LTTPSPIYLAKALSYL---SSQGVTHVSVEASS 191
             Q  R                     LTTP P+ L          +   V  V++EASS
Sbjct: 210 AMQPGRGRGVVIGTNGVGTPGALEYIGLTTPDPLTLQTLFQRFRADTEAPVGVVAMEASS 269

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            GL Q R+ G  +    FTNL RDH+DYH + QAY  AK+ LF    P    A++   D 
Sbjct: 270 IGLVQGRMQGTCIHTAVFTNLTRDHLDYHGSMQAYGAAKVGLFS--WPTLQAAVVNLGDP 327

Query: 252 YSKEVMK--RAHNAGCRVLSVGY 272
            + E+++    H A  R+  +GY
Sbjct: 328 LATEIIEVLHRHTAAPRI--IGY 348


>gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL F2-515]
          Length = 242

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 18/247 (7%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +             +  + P++ V ++++ +++ A   YG   +   I+ +TGT+GK++V
Sbjct: 65  IAEKQ---------VDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKIVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243
            SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L       +P  
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 244 AIIYADD 250
           A++ ADD
Sbjct: 236 AVLNADD 242


>gi|238854409|ref|ZP_04644751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|260665100|ref|ZP_05865950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931813|ref|ZP_06337298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|313473004|ref|ZP_07813491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|238833031|gb|EEQ25326.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|239528789|gb|EEQ67790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|260561154|gb|EEX27128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304120|gb|EFA96237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
          Length = 516

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 130/508 (25%), Positives = 217/508 (42%), Gaps = 69/508 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84
           K++ +S DSR IQ   +F         G  F P  ++     GA   V    +       
Sbjct: 30  KMDYISYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGATCYVAEQPFPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR-- 139
                   LVV +  K ++L ++  Y + P++   ++A TGT GK++ A F++ I  +  
Sbjct: 80  ---KGMHALVVRDVTKAMALLSAAFY-RFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMN 135

Query: 140 SGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            G ++        +    +D   + LTTP  + L + +      G+TH+ +E SS    +
Sbjct: 136 GGKTALFSSVNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKK 195

Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +R+ G+    G F N+  DHI  + H     Y + K+    +LL      II A+  +  
Sbjct: 196 NRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETDHFS 251

Query: 255 EVMKRA-----------------HNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTI 293
           EV   A                  N   +V    L    +   I  K      + +   +
Sbjct: 252 EVYAAATTTTNPDSIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHL 311

Query: 294 SVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++EG   ++   + G+F   N   A++ AGL  A    +A  + H+     +PGR E   
Sbjct: 312 AIEG---EYTLDMIGDFNEINGTAAIIGAGLGGANHDHAAEGIRHV----TIPGRMETEK 364

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T + G  + VDYAH   S+  ++  ++   ++ +IIVV G  GD+   +RP   +     
Sbjct: 365 TKNHG-LVVVDYAHNKASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVF 423

Query: 410 ADIAIVTDDNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD A +T D+P  EDP    E+I A I H       + +R +AIR AI M  K DV+++ 
Sbjct: 424 ADKAFLTTDDPGFEDPMDIAEEINAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLIC 483

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +    V         D  + R ++
Sbjct: 484 GKGADPFQKVRGINTPYPSDIVVARNVI 511


>gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
 gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
          Length = 509

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 209/466 (44%), Gaps = 52/466 (11%)

Query: 13  ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           E++  + I  ++ +   + +I+ +S +S +I+A  +FVAI G   DGH +I  A   GA 
Sbjct: 5   EILKDIEIIDIRGKIDLDTEISNMSYNSINIEASGLFVAIKGKITDGHKYIKNAKNHGAI 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126
             VV      +DF        P + VDNTRK L+  A   Y K P     ++ +T T+GK
Sbjct: 65  VAVV------EDFKEVY---IPQIKVDNTRKSLADLAKNFY-KDPSKDLKVIGITATNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVT 183
           ++ +  +++I   + +++  IG   T   FA  N    LTTP  + L K    +  + ++
Sbjct: 115 TTTSFMLKKILSENKINTGIIGTVYT--KFADVNIPSILTTPESLELQKYFKEMLDKNIS 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           HV +E SS      R++ I     SF NL R+HID H + + YF  K ++      K S 
Sbjct: 173 HVVMEVSSSAQQMLRVNNIDFDIVSFGNLSREHIDQHGSFENYFRDKSKIILN-AKKGSF 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRV---------------LSVGYQGKFI-HLKKVCAIHN 287
           A++  D+ Y   + ++   +   +               LS G+ GKF+ H+       N
Sbjct: 232 ALLNMDNEYIASLKEKTKASVLTISMENLDSDFGISKLDLSTGF-GKFMFHV-------N 283

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +    I+++ + F+      G   V N ++A  L + + +D  ++L  LE    V  RFE
Sbjct: 284 RDIKEINLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALENFKGVERRFE 343

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIA 406
            +       ++  D+     ++++ +  +  +    + +++   G+R  +  R +  ++ 
Sbjct: 344 LIY--DEKFKVLDDHFANEKNIDVTMTTLSQMNYKNLHILYAIRGNRGVELNRAVDERLC 401

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAI 449
             L  +   T     SED  K + ++      +   + K N IE +
Sbjct: 402 FWLKKLKASTLFTTFSEDTVKQKDKVTQEEKAVYAEVLKNNNIETV 447


>gi|213581231|ref|ZP_03363057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 138

 Score =  114 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 9/120 (7%)

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR
Sbjct: 1   YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPR 60

Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +E+P  I  +I+ G+   ++ G       R EA+  AI      DV+++AGKGHE   IV
Sbjct: 61  TEEPRAIINDILAGM---LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 117


>gi|116512675|ref|YP_811582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|123125372|sp|Q02X53|MURE_LACLS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116108329|gb|ABJ73469.1| UDP-N-acetylmuramyl tripeptide synthase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 483

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 213/485 (43%), Gaps = 77/485 (15%)

Query: 21  FPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +   W +E   +++S DSR      +F A       G  F  + +     A  VS     
Sbjct: 26  YYFNWPKEVNFDQLSYDSRKSTKDTLFFA------KGLNFKKEYLTDLEAAFYVSEF--- 76

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136
            D+   +    P ++V + ++ ++L A+  Y K P+N    LA+TGT GK++ A F + I
Sbjct: 77  -DYEVAL----PAIIVTDVKRAMALIAANFY-KFPQNKLKTLALTGTKGKTTSAYFAKSI 130

Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +       +  T+  +   Q+   + LTTP  + L + ++     G+TH+ +E SS  
Sbjct: 131 LDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKALENGMTHLVMEVSSQA 190

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYF---------------NAKMRLF-- 234
               R+ G+    G F N+  DHI    H T + YF               NA+M  F  
Sbjct: 191 YKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSRYFVANAEMNHFAI 250

Query: 235 --EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             EEL  ++ P   Y  D+ +K +  +    G   ++ G                     
Sbjct: 251 IKEELNERKIPHAFYGADSENKIIESK----GLHFVTDG--------------------- 285

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            SV G   +F   L G F   NAL  A    A+G     + + L    +VPGR E + T 
Sbjct: 286 -SVSG---EFDIRLLGRFNQENALATALATKALGASFENIRQGLASA-IVPGRMELL-TA 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  IY+DYAH   SLE +++ +    +G++ +V G  G++ + +R   G++  +   +
Sbjct: 340 KNGAHIYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRL 399

Query: 413 -AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
             I+T D+   E+P+ I  EI   +   ++ + +R  AI+ AI +  N  D +++AGKG 
Sbjct: 400 NVILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGA 459

Query: 470 ETVHI 474
           +   +
Sbjct: 460 DMFQL 464


>gi|330859319|emb|CBX69666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia enterocolitica W22703]
          Length = 298

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 128/268 (47%), Gaps = 19/268 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+V  +     D S   
Sbjct: 19  ERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ + N  + LS  A + Y   P   L + G +G +   +  Q + Q + +    
Sbjct: 79  MHGVPVIYLRNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWAKM---- 133

Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G TS +     +  L        TT S + +   L  L  QG T  ++E SSHGL Q+R
Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + 
Sbjct: 194 VAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLG 251

Query: 259 RAHNAGC----RVLSVGYQGKFIHLKKV 282
           +   A        + VG+ G ++   +V
Sbjct: 252 QLPQAVAVSMENNIPVGWNGPWLSASQV 279


>gi|227879194|ref|ZP_03997066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844018|ref|ZP_05549505.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256849418|ref|ZP_05554850.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|262046085|ref|ZP_06019048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|293380702|ref|ZP_06626751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|312976906|ref|ZP_07788655.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
 gi|227861197|gb|EEJ68844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613923|gb|EEU19125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256713534|gb|EEU28523.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|260573415|gb|EEX29972.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|290922742|gb|EFD99695.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|310896234|gb|EFQ45299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
          Length = 523

 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 214/488 (43%), Gaps = 75/488 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84
           K++ VS DSR IQ   +F         G  F P  ++     GA   V    Y       
Sbjct: 30  KMDYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
                   L+V +  K ++L ++  + + P++   ++A TGT GK++ A F++ +  ++ 
Sbjct: 80  ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQAN 135

Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                 +SS    +GP     SF   + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 136 GGKTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEE 236
             ++R+ G+    G F N+  DHI  + H     Y + K++L               F+E
Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDE 252

Query: 237 LLPKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +    +    P  IY  A D +    +K+  +   R  S     K      VCA    ++
Sbjct: 253 VYAAATTTTNPDSIYLFARDNFENPDLKQPID--FRFSSEQLDMKETRFNLVCASDKARK 310

Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + I+      D+   + G+F   N   A++ AGL    G++     + +  +  +PGR +
Sbjct: 311 LPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGRMQ 361

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              T  + G + VDYAH   S+  +++ +R      +IIVV G  GD+   +RP   +  
Sbjct: 362 TERT-KKHGMVVVDYAHNKASMMALMRFMRNEFNDPKIIVVVGAPGDKGVSRRPGFSESL 420

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
              AD A +T D+P  EDP+ I  EI  GI         + +R +AI  AI M    DV+
Sbjct: 421 TAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMATPDDVV 480

Query: 463 VVAGKGHE 470
           ++ GKG +
Sbjct: 481 LICGKGAD 488


>gi|295704237|ref|YP_003597312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294801896|gb|ADF38962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 287

 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 11/229 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + IN ++  S+ +  G +F +I G  EDGH +I +AIA+GA A+  +S   L+  S T  
Sbjct: 22  QTINYLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAIARGAVAVFGTSIEKLRLLS-TQY 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S+   L VD+ RK ++ F+   +    E I  + VTGT+GK++VA++V+ +     L + 
Sbjct: 81  SHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRSLLTLLKLPTG 140

Query: 146 QIGPTSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG T   SS      + +  TTP  + L K    L ++G     +E SS  +DQ R++ 
Sbjct: 141 SIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAIDQQRVEN 200

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           I       TNL  +H++YH+T + Y   KM+LF++       A+I  DD
Sbjct: 201 IYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQ----AKHAVINIDD 245


>gi|313124624|ref|YP_004034883.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312281187|gb|ADQ61906.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 516

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 133/513 (25%), Positives = 219/513 (42%), Gaps = 75/513 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + ++  VS DSR +Q   +F      K  G    ++  A   GA A V    Y       
Sbjct: 28  QTRMEAVSYDSRDVQNNSLFFC----KGAGFRPTYLTMAKENGAIAYVAEQPYPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
              +    L+V N  K ++L ++  Y + P++   ++  TGT GK++ A F++ +     
Sbjct: 80  ---TGMHALIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGM----- 130

Query: 142 LSSFQIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           L     G T+ +SS              + LTTP  + L + +      G+TH+ +E SS
Sbjct: 131 LDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSS 190

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
               ++R+ G+    G F N+  DHI  + H   + Y + K+    +LL      II A+
Sbjct: 191 QAYKKNRVFGLTYDLGFFLNISPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAE 246

Query: 250 -----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
                D Y+        ++       G++     LKK      K   T   E K F    
Sbjct: 247 TDRFADVYAAATTTTNPDSIYLFARDGFENP--DLKKPIDFRYKSVETDLAETK-FTLTT 303

Query: 304 -------FPLPGEFQV-----YNALVAAGLCIAIGI------DSALVLEHLEKLHVVPGR 345
                   P+ GE+ +     +N   A G  I  G+      D A  + H+     +PGR
Sbjct: 304 ASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHV----TIPGR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E V T  + G I VDYAH   S+  +++ +R   T+ R+IVV G  GD+   +RP   +
Sbjct: 360 METV-TTQKHGLIVVDYAHNKASMLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSE 418

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
                AD A +T D+P  E+ + I  EI  GI       + + +R +AI+ AI      D
Sbjct: 419 SLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPND 478

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V+++ GKG +    +   +   + D  I R+++
Sbjct: 479 VVLLCGKGADAFQKIRGVDTPYAGDIVIARQVV 511


>gi|295693699|ref|YP_003602309.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate--l-lysi ne ligase
           [Lactobacillus crispatus ST1]
 gi|295031805|emb|CBL51284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus ST1]
          Length = 523

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 214/488 (43%), Gaps = 75/488 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84
           K++ VS DSR IQ   +F         G  F P  ++     GA   V    Y       
Sbjct: 30  KMDYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
                   L+V +  K ++L ++  + + P++   ++A TGT GK++ A F++ +  ++ 
Sbjct: 80  ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQAN 135

Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                 +SS    +GP     SF   + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 136 GGKTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEE 236
             ++R+ G+    G F N+  DHI  + H     Y + K++L               F+E
Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDE 252

Query: 237 LLPKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +    +    P  IY  A D +    +K+  +   R  S     K      VCA    ++
Sbjct: 253 VYAAATTTTNPDSIYLFARDNFENPDLKQPID--FRFSSEQLDMKETRFNLVCASDKARK 310

Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + I+      D+   + G+F   N   A++ AGL    G++     + +  +  +PGR +
Sbjct: 311 LPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGRMQ 361

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              T  + G + VDYAH   S+  +++ +R      +IIV+ G  GD+   +RP   +  
Sbjct: 362 TERT-KKHGMVVVDYAHNKASMMALMRFMRNEFNDPKIIVIVGAPGDKGVSRRPGFSESL 420

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
              AD A +T D+P  EDP+ I  EI  GI         + +R +AI  AI M    DV+
Sbjct: 421 TAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRNKAIHDAIAMATPDDVV 480

Query: 463 VVAGKGHE 470
           ++ GKG +
Sbjct: 481 LICGKGAD 488


>gi|116493794|ref|YP_805528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei ATCC 334]
 gi|122264751|sp|Q03CI6|MURE_LACC3 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116103944|gb|ABJ69086.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei ATCC
           334]
          Length = 517

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 195/436 (44%), Gaps = 46/436 (10%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L+V N  K +++ ++  +  +P++   ++A TGT GK++ + F + I   +      +  
Sbjct: 85  LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143

Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           T  T+     D R    LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257
             G F N+  DHI  + H T   Y + K+    +LL      +I A     D  Y+    
Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304
                +     S G++ K   +       +++          V ++ +    +    +  
Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319

Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L G+F   NA   ++ AGL    G+D++  +  + K+ + PGR E       G  +YVD
Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A +T D+P
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434

Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             EDP    E+I ++I H      +  +R +AI  AI      D++VVAGKG +    V 
Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRKKAIAEAISDSGPNDIVVVAGKGADPYQKVR 494

Query: 477 NGEKKMSVDCDIIREI 492
                   D  +++++
Sbjct: 495 GVNTPWPTDMAVVKQV 510


>gi|300812318|ref|ZP_07092754.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496738|gb|EFK31824.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 516

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 133/513 (25%), Positives = 219/513 (42%), Gaps = 75/513 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + ++  VS DSR +Q   +F      K  G    ++  A   GA A V    Y       
Sbjct: 28  QTRMEAVSYDSRDVQNNSLFFC----KGAGFRPTYLTMAKENGAIAYVAEQPYPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
              +    L+V N  K ++L ++  Y + P++   ++  TGT GK++ A F++ +     
Sbjct: 80  ---TGMHALIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGM----- 130

Query: 142 LSSFQIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           L     G T+ +SS              + LTTP  + L + +      G+TH+ +E SS
Sbjct: 131 LDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSS 190

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
               ++R+ G+    G F N+  DHI  + H   + Y + K+    +LL      II A+
Sbjct: 191 QAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAE 246

Query: 250 -----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
                D Y+        ++       G++     LKK      K   T   E K F    
Sbjct: 247 TDRFADVYAAATTTTNPDSIYLFARDGFENP--DLKKPIDFRYKSVETDLAETK-FTLTT 303

Query: 304 -------FPLPGEFQV-----YNALVAAGLCIAIGI------DSALVLEHLEKLHVVPGR 345
                   P+ GE+ +     +N   A G  I  G+      D A  + H+     +PGR
Sbjct: 304 ASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHV----TIPGR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E V T  + G I VDYAH   S+  +++ +R   T+ R+IVV G  GD+   +RP   +
Sbjct: 360 METV-TTQKHGLIVVDYAHNKASMLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSE 418

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
                AD A +T D+P  E+ + I  EI  GI       + + +R +AI+ AI      D
Sbjct: 419 SLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPND 478

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V+++ GKG +    +   +   + D  I R+++
Sbjct: 479 VVLLCGKGADAFQKIRGVDTPYAGDIVIARQVV 511


>gi|227534585|ref|ZP_03964634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187834|gb|EEI67901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 517

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 195/436 (44%), Gaps = 46/436 (10%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L+V N  K +++ ++  +  +P++   ++A TGT GK++ + F + I   +      +  
Sbjct: 85  LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143

Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           T  T+     D R    LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257
             G F N+  DHI  + H T   Y + K+    +LL      +I A     D  Y+    
Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304
                +     S G++ K   +       +++          V ++ +    +    +  
Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319

Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L G+F   NA   ++ AGL    G+D++  +  + K+ + PGR E       G  +YVD
Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A +T D+P
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434

Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             EDP    E+I ++I H      +  +R +AI  AI      D++VVAGKG +    V 
Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSGPNDIVVVAGKGADPYQKVR 494

Query: 477 NGEKKMSVDCDIIREI 492
                   D  +++++
Sbjct: 495 GVNTPWPTDMAVVKQV 510


>gi|191637036|ref|YP_001986202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei BL23]
 gi|190711338|emb|CAQ65344.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus casei BL23]
 gi|327381063|gb|AEA52539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei LC2W]
 gi|327384238|gb|AEA55712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei BD-II]
          Length = 517

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 195/436 (44%), Gaps = 46/436 (10%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L+V N  K +++ ++  +  +P++   ++A TGT GK++ + F + I   +      +  
Sbjct: 85  LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143

Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           T  T+     D R    LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 TIDTVVGPESDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257
             G F N+  DHI  + H T   Y + K+    +LL      +I A     D  Y+    
Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304
                +     S G++ K   +       +++          V ++ +    +    +  
Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319

Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L G+F   NA   ++ AGL    G+D++  +  + K+ + PGR E       G  +YVD
Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A +T D+P
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434

Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             EDP    E+I ++I H      +  +R +AI  AI      D++VVAGKG +    V 
Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKGADPYQKVR 494

Query: 477 NGEKKMSVDCDIIREI 492
                   D  +++++
Sbjct: 495 GVNTPWPTDMAVVKQV 510


>gi|239631049|ref|ZP_04674080.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527332|gb|EEQ66333.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 517

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 195/436 (44%), Gaps = 46/436 (10%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L+V N  K +++ ++  +  +P++   ++A TGT GK++ + F + I   +      +  
Sbjct: 85  LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143

Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           T  T+     D R    LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257
             G F N+  DHI  + H T   Y + K+    +LL      +I A     D  Y+    
Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304
                +     S G++ K   +       +++          V ++ +    +    +  
Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319

Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L G+F   NA   ++ AGL    G+D++  +  + K+ + PGR E       G  +YVD
Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A +T D+P
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434

Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             EDP    E+I ++I H      +  +R +AI  AI      D++VVAGKG +    V 
Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKGADPYQKVR 494

Query: 477 NGEKKMSVDCDIIREI 492
                   D  +++++
Sbjct: 495 GVNTPWPTDMAVVKQV 510


>gi|125624766|ref|YP_001033249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|166224780|sp|A2RMM5|MURE_LACLM RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|124493574|emb|CAL98559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071566|gb|ADJ60966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 483

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 213/485 (43%), Gaps = 77/485 (15%)

Query: 21  FPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +   W +E   +++S DSR      +F A       G  F  + +     A  VS     
Sbjct: 26  YYFNWPKEVNFDQLSYDSRKSTKDTLFFA------KGLNFKKEYLTDLEAAFYVSEF--- 76

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136
            D+   +    P ++V + ++ ++L A+  Y + P+N    LA+TGT GK++ A F + I
Sbjct: 77  -DYEVAL----PAIIVTDVKRAMALIAANFY-EFPQNKLKTLALTGTKGKTTSAYFAKAI 130

Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +       +  T+  +   Q+   + LTTP  + L + ++     G+TH+ +E SS  
Sbjct: 131 LDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKALENGMTHLVMEVSSQA 190

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYF---------------NAKMRLF-- 234
               R+ G+    G F N+  DHI    H T + YF               NA+M  F  
Sbjct: 191 YKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSRYFVANAEMNHFAI 250

Query: 235 --EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             EEL  ++ P   Y  D+ +K +  +    G   ++ G                     
Sbjct: 251 IKEELNERKIPHAFYGADSENKIIESK----GLHFVTDG--------------------- 285

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            SV G   +F   L G F   NAL  A    A+G     + + L    +VPGR E + T 
Sbjct: 286 -SVSG---EFDIRLLGRFNQENALATALATKALGASFENIRQGLASA-IVPGRMELL-TA 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  IY+DYAH   SLE +++ +    +G++ +V G  G++ + +R   G++  +   +
Sbjct: 340 KNGAHIYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRL 399

Query: 413 -AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
             I+T D+   E+P+ I  EI   +   ++ + +R  AI+ AI +  N  D +++AGKG 
Sbjct: 400 NVILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGA 459

Query: 470 ETVHI 474
           +   +
Sbjct: 460 DMFQL 464


>gi|291521934|emb|CBK80227.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 514

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 217/513 (42%), Gaps = 51/513 (9%)

Query: 8   YKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIA 65
           Y D    ++ L+   M  R E  I  ++ DSR +  G +F+      KE    ++  AI 
Sbjct: 9   YADLLSSVDMLAEAEMMGRDETVITYLTYDSRAVTPGTLFICKGAAFKEQ---YLENAIR 65

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
            GA A V    Y  +       +  P L+V + RK +   A   + K  +   ++   GT
Sbjct: 66  AGAVAYVSEVQYETE-------TKVPCLIVKDIRKAMPPLAEMYFNKAWQELTVIGFGGT 118

Query: 124 SGKSSVASFVQQICQ--RSGLSSFQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYL 177
            GKS+ A +++ I     +     +    S+I  +     Q++ +TTP  + L + + + 
Sbjct: 119 KGKSTSAYYMKAIVDDYMAATGGKESAVLSSIDIYDGVIRQESHITTPESVELHEHMRHA 178

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G+T++ +E SS  L   R++ ++     + N+  DHI    H+  + Y ++KM++F 
Sbjct: 179 VDSGITYLEMEVSSQALKYDRVNNMQFDVAVYLNISEDHISPIEHKDFEDYISSKMKMF- 237

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGC------RVLSVGYQGKFIHLKKVCAIHNKQ 289
             L K+  A++  D  + +  +K A +AG       +  S  + G  IH           
Sbjct: 238 -ALAKQ--AVVNLDADFVERALKAAEDAGSFKTFSLKDPSADFYGYNIH-------KEDG 287

Query: 290 QVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++  SV+   FD  F   +PG F V NA+        + I    +   L +     GR E
Sbjct: 288 EIIFSVKCDKFDETFSLTMPGLFNVENAVAVVAAATLLNIPLEYIKSGLHRAR-SSGRME 346

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              +  +     VDYAH   S E +  + R       I+ +FGC G +   +R  +G IA
Sbjct: 347 LYTSADKRVTAVVDYAHNKLSFEKLFGSTREEYPDHDIVAIFGCPGYKAYIRRKDLGLIA 406

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQD 460
            + +    +  ++P  E  ++I  +I   +         IE  +R  AI  AI    +  
Sbjct: 407 GEYSKKVYLVAEDPGKEPVQQISEDIAQYVAQKNCPYEIIE--DRGVAIHKAIMECKRPT 464

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           VL++ GKG+ET             D + ++E L
Sbjct: 465 VLLITGKGNETRQKYGTIYADCRTDVEYVKEYL 497


>gi|295426127|ref|ZP_06818794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064163|gb|EFG55104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 551

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 203/486 (41%), Gaps = 75/486 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84
           KI  VS DSR IQ   +F         G  F P  ++     GA   V    Y       
Sbjct: 58  KIEYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 107

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
                   L+V +  K ++L ++  + + P++   ++A TGT GK++ A F++ +     
Sbjct: 108 ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGM----- 158

Query: 142 LSSFQIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           L     G T+ ISS              + LTTP  + L + +      G+TH+ +E SS
Sbjct: 159 LDQMNGGRTALISSVNDIVGRRPEDSFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSS 218

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------F 234
               ++R+ G+    G F N+  DHI  + H     Y + K++L               F
Sbjct: 219 QAYKKNRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAESDHF 278

Query: 235 EELLPKES----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +E+    +    P  IY   + + E  K       R  S     +    K  C     +Q
Sbjct: 279 DEIYAAATTTTNPDSIYLFASENFENPKLNVPIDFRYASQETDMRETRFKLFCVSDKAKQ 338

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + I+ E     +   + G+F   NA   ++ AGL        A  + H+     +PGR +
Sbjct: 339 LPINGE-----YTLQMIGDFNESNATAAIIGAGLAGMSHDACAKGIRHV----TIPGRMQ 389

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              T   G  + VDYAH   S+  ++  + R   + +IIVV G  GD+   +RP   +  
Sbjct: 390 TEMTKDHG-MVIVDYAHNKASMMALMSFVKREFNNPKIIVVVGAPGDKGVSRRPGFSESL 448

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
              AD A +T D+P  EDP+ I  EI  GI         + +R +AI  AI M  K DV+
Sbjct: 449 TAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGKDDVV 508

Query: 463 VVAGKG 468
           ++ GKG
Sbjct: 509 LICGKG 514


>gi|301065370|ref|YP_003787393.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|300437777|gb|ADK17543.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
          Length = 517

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 194/436 (44%), Gaps = 46/436 (10%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L+V N  K +++ ++  +  +P++   ++A TGT GK++ + F + I   +      +  
Sbjct: 85  LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143

Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           T  T+     D R    LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257
             G F N+  DHI  + H T   Y + K+    +LL      +I A     D  Y+    
Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304
                +     S G++ K   +       +++          V ++ +    +    +  
Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319

Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L G+F   NA   ++ AGL    G+D++  +  + K+ + PGR E       G  +YVD
Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A +T D+P
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434

Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             EDP    E+I ++I H      +  +R  AI  AI      D++VVAGKG +    V 
Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRQRAIAEAISDSRPNDIVVVAGKGADPYQKVR 494

Query: 477 NGEKKMSVDCDIIREI 492
                   D  +++++
Sbjct: 495 GVNTPWPTDMAVVKQV 510


>gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola]
          Length = 292

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 135/263 (51%), Gaps = 15/263 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L Y  FP + N     P    ++K + +S DSR + +  +F+AI G K+DG+ FI
Sbjct: 1   MKKNNLKYILFPWIKNT----P----QKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117
            +A+ +   AI+  +    +       +N PIL      + +S  A+R+Y K P     I
Sbjct: 53  FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVY-KEPAKTLKI 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V   + Q  +  G     +G       +  +  + TT S I +   L  
Sbjct: 112 IGVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHI 171

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + + +  V++E SSHGL Q+R+  I    G FTNL +DH+DYH+  + Y +AK   F +
Sbjct: 172 AAKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ 231

Query: 237 LLPKESPAIIYADDAYSKEVMKR 259
              K    I+ A+D Y+K+ +++
Sbjct: 232 --HKIKKIILNANDKYAKKWLRK 252


>gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 535

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 122/507 (24%), Positives = 228/507 (44%), Gaps = 68/507 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +  E  IN+++  S+ ++   +FV I G++ DGH +   A++QGA  I+V     ++D  
Sbjct: 23  ELNEIDINKITYHSKEVETDTLFVCIKGHQTDGHNYAKHAVSQGATVIIVEQF--IEDL- 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
                +   L V N+R+ L++ +S  + +  ++  +  VT T+GK+++    ++I +   
Sbjct: 80  -----DVLQLKVSNSREVLAILSSNFFDQPSKSMSLFGVTATNGKTTITYMTEEIFKAYQ 134

Query: 142 LSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L S  IG     I    + +RLTTP    L +  + +  Q +THVS+E SS  L+  R+ 
Sbjct: 135 LKSGIIGTIVVKIDKEIEMSRLTTPESYDLQQYFAKMRDQEITHVSMEVSSSALELKRVY 194

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                  +FTN+  +HI  H + +AYF+AK  L      K S AI+  D+     ++  A
Sbjct: 195 HTDFDVVAFTNISPEHIQLHDSFEAYFDAKASLIRN-ASKMSTAILNLDEQL---LIPLA 250

Query: 261 HNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTIS----------VEGKDFDFLFPL 306
                +V++ G + K     +   +  +     +VTI           +E   FD    +
Sbjct: 251 EETAAQVVTFGIENKSGTITVSDIRFSSGMPSFKVTIQEPFNTLSGERIEPTSFDLELSI 310

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDY 362
           PG   +YNAL A    +  G+ + + LE++++       V  RF+ +    +  ++  D 
Sbjct: 311 PGYHSIYNALTA----LVTGLVNDIPLEYVQRGIKNFRGVERRFQILY--DKEFKVIDDL 364

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIMGKIA-----LDLADIAIVT 416
               N+++  ++ I  +    + +V    G         I   +A     L ++ I + T
Sbjct: 365 LLNQNNIDSCMETINHLDYNELHLVHALRGSNGPAHSTEIAESLAKWFHELKISKIILTT 424

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIE---------AIRTAIEMLNKQDVLVVA 465
                S    K  A     +  F++  K + IE         A+R  +E LN++DVL+++
Sbjct: 425 ----ASSHVAKKDAVTDEELAAFLKVMKQSNIEVTFSTELDDALRFGVERLNEEDVLLIS 480

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           G      H +  G +K     ++++EI
Sbjct: 481 G-----AHSMDQGARKT---LELLKEI 499


>gi|295093595|emb|CBK82686.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp.
           ART55/1]
          Length = 507

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 119/492 (24%), Positives = 206/492 (41%), Gaps = 56/492 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +S+ +  G  FV    + KED   ++  AIAQGA   +    Y   D         P
Sbjct: 35  ITINSKDVVPGTFFVCKGASFKED---YLKSAIAQGAIVYLSQQKYDDVDI--------P 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV----------TGTSGKSSVASFVQQICQRSG 141
            ++V++ RK ++L A   +G   +N+  V               K  +  +    C  S 
Sbjct: 84  YIIVNDIRKAMALAARWFFGNPGDNMTKVGITGTKGKTTVTFVMKDILDKYTDNRC--SA 141

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S+ +I     + +   +  LTTP PI L         +G TH  +E SS  +  +R+ G
Sbjct: 142 FSTHEID----VGTKVFETTLTTPEPIELQTYFDMAVDEGCTHCIMEVSSQAMKMNRIYG 197

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY------- 252
                G FTN+  DHI    H + + Y   K+   ++        ++Y+D  Y       
Sbjct: 198 EHYKVGVFTNIDYDHISPTEHASMEDYLGCKVSFLKQC----DNVVLYSDTRYFETIYNE 253

Query: 253 --SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLF 304
              K V+          L       F       +IHN+          +   G++  +  
Sbjct: 254 VRDKHVVVYGSKESIEKLMSRDDDFFEKDTDFASIHNEDLTDHNSYFELIYGGENRAYNT 313

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G++ V N + A    + IGI +  +   +  ++V PGR +      R     +DYAH
Sbjct: 314 NLIGDYNVENIVAAIISSLLIGIPNDQIRSSIRDVYV-PGRLQVYHWKDRT--FMIDYAH 370

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  + + ++ T+    I VVFGCGG+R + +R  MG++A   AD  ++T ++P  E
Sbjct: 371 NYISMYRLYEMVKKTMKPKSITVVFGCGGERYKKRREDMGRLAEQYADKVVLTMEDPGFE 430

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             E+I  EI   I  P +I   +R +A+  A++     ++++  GKG E+   +     +
Sbjct: 431 SCEEICKEIKQYITKPCYI-IVDREQALTRALDEAQPGELVITTGKGIESTQRINGTFVQ 489

Query: 482 MSVDCDIIREIL 493
              D  +I   L
Sbjct: 490 CHSDAQVIEHWL 501


>gi|289758280|ref|ZP_06517658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
 gi|289713844|gb|EFD77856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
          Length = 417

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 165/360 (45%), Gaps = 21/360 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 41  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 97

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 98  RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 156

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 157 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 215

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260
            +   G+FTNL RDH+D+H +   YF AK  LF+ +   +   A++  DD   + +  RA
Sbjct: 216 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 275

Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +     ++V    +  H +           +Q   I   G        LPG + V N L
Sbjct: 276 AD----AITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 331

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  +   +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L  +
Sbjct: 332 VALAILDTVGVSPEQAVPGLREIR-VPGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 389


>gi|328464396|gb|EGF35805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 523

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 130/513 (25%), Positives = 216/513 (42%), Gaps = 79/513 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84
           K+  VS DSR IQ   +F         G  F P  ++     GA   V    Y       
Sbjct: 30  KMEYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
                   L+V +  K ++L ++  + + P++   ++A TGT GK++ A F++ +  ++ 
Sbjct: 80  ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQAN 135

Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                 +SS    IGP     SF   + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 136 GGKTALISSVNDVIGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             ++R+ G+    G F N+  DHI  + H     Y + K+    +LL      II A+ A
Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETA 248

Query: 252 YSKEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNK 288
           +  EV   A                            R  S     K    K  CA    
Sbjct: 249 HFNEVYAAATTTTNPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKA 308

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +++ I+      D+   + G+F   N   A++ AGL    G++     + +  +  +PGR
Sbjct: 309 RKLPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
            +   T + G  + VDYAH   S+  ++  +++   + +IIVV G  GD+   +RP   +
Sbjct: 360 MQTERTKNHG-MVVVDYAHNKASMMALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSE 418

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
                AD A +T D+P  EDP+ I  EI  GI         + +R +AI  AI M    D
Sbjct: 419 SLSAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDD 478

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V+++ GKG +    +         D  + +E++
Sbjct: 479 VVLICGKGADAFQKIRGVNTPYPSDIVVAQEVI 511


>gi|104774695|ref|YP_619675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116514822|ref|YP_813728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122274446|sp|Q047T2|MURE_LACDB RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|123378345|sp|Q1G8B5|MURE_LACDA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|103423776|emb|CAI98782.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116094137|gb|ABJ59290.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126516|gb|ADY85846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 516

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 214/509 (42%), Gaps = 73/509 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +  VS DSR +Q   +F      K  G    ++  A   GA A V    Y          
Sbjct: 31  MEAVSYDSRDVQNNSLFFC----KGAGFRPTYLTMAKENGAIAYVAEQPYPEG------- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSF 145
           +    L+V N  K ++L ++  Y    +++  V  TGT GK++ A F++ +     L   
Sbjct: 80  TGMHALIVRNVSKAMALLSAAFYSFPQDDLFLVGFTGTKGKTTSAYFLKGM-----LDQL 134

Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             G T+ +SS              + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 135 NGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYK 194

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---- 249
           + R+ G+    G F N+  DHI  + H   + Y + K+    +LL      II A+    
Sbjct: 195 KSRVFGLTYDLGFFLNISPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAETDRF 250

Query: 250 -DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----- 303
            D Y+        ++       G++     LKK      K   T   E K F        
Sbjct: 251 ADVYAAATTTTNPDSIYLFARDGFENP--DLKKPIDFRYKSVETDLAETK-FTLTTASSK 307

Query: 304 ---FPLPGEFQV-----YNALVAAGLCIAIGI------DSALVLEHLEKLHVVPGRFEFV 349
               P+ GE+ +     +N   A G  I  G+      D A  + H+     +PGR E V
Sbjct: 308 AHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHV----TIPGRMETV 363

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T  + G I VDYAH   S+  +++ +R   T+ R+IVV G  GD+   +RP   +    
Sbjct: 364 -TTQKHGLIVVDYAHNKASMLALMRFMRREFTTPRVIVVVGAPGDKGISRRPGFSESLTA 422

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD A +T D+P  E+ + I  EI  GI       + + +R +AI+ AI      DV+++
Sbjct: 423 EADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPDDVVLL 482

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKG +    +   +   + D  I R+++
Sbjct: 483 CGKGADAFQKIRGVDTPYAGDIVIARQVI 511


>gi|242035159|ref|XP_002464974.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
 gi|241918828|gb|EER91972.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
          Length = 761

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 120/501 (23%), Positives = 223/501 (44%), Gaps = 53/501 (10%)

Query: 13  ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+     ++  +  V  D+  + AG +FV +    EDG   + +A  +GA 
Sbjct: 233 ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV---GEDGLAGLTEADKRGAV 289

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS- 128
           A+V     +++   A       +++VD+    L +  + LY + P   +AV G +G    
Sbjct: 290 AVVADQDLNIEGTLAC----RALVIVDDILAALRVLPACLY-RRPSTDMAVIGVTGTDGV 344

Query: 129 ------VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                 V +  + +  R+GL    +G  +  S+        +  PI   K ++ +   G 
Sbjct: 345 TTTTHLVKAMYEAMGVRTGLVGV-LGAYAFGSNKLDARPDASSDPIAAQKLMATMLHNGT 403

Query: 183 THVSVEASSHGLDQHRLDG-IKLIAGSFTNL----GRDHIDYHQTQQAYFNAKMRLFEEL 237
             V +E ++ G+    +   I       TN+    G D + Y Q    Y ++   LF  +
Sbjct: 404 EAVVLETATDGIPPSGVGSEIDYDIAVLTNVRHTDGEDGMTYEQ----YMSSMASLFSRM 459

Query: 238 L-PKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + P     ++  DD  +     +  H+      S   +   +H  K      + +V +  
Sbjct: 460 VDPDRHRKVVNIDDPCAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQT 519

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +    L G   +YN L    + IA+G     ++  +E++  +PGR E +      
Sbjct: 520 PHGILEISSGLLGRENIYNILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELIDEEQAF 579

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G + VD+A T  +L  +L  +R +   RI+ V GC G++++GKRP+M KIA D +D+ ++
Sbjct: 580 G-VIVDHARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVML 638

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAI 453
           T DNP +EDP  I  +++ G+   +E+               G+R+        A+R A+
Sbjct: 639 TSDNPANEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAV 698

Query: 454 EMLNKQDVLVVAGKGHETVHI 474
            M  + DV+V+ GKG++T  I
Sbjct: 699 AMGEQGDVVVITGKGNDTYQI 719


>gi|161508038|ref|YP_001578005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260103045|ref|ZP_05753282.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|160349027|gb|ABX27701.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083135|gb|EEW67255.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|323467273|gb|ADX70960.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
 gi|323467316|gb|ADX71003.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
          Length = 523

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 130/513 (25%), Positives = 216/513 (42%), Gaps = 79/513 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84
           K+  VS DSR IQ   +F         G  F P  ++     GA   V    Y       
Sbjct: 30  KMEYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
                   L+V +  K ++L ++  + + P++   ++A TGT GK++ A F++ +  ++ 
Sbjct: 80  ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQAN 135

Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                 +SS    IGP     SF   + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 136 GGKTALISSVNDVIGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             ++R+ G+    G F N+  DHI  + H     Y + K+    +LL      II A+ A
Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETA 248

Query: 252 YSKEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNK 288
           +  EV   A                            R  S     K    K  CA    
Sbjct: 249 HFNEVYAAATTTTNPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKA 308

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +++ I+      D+   + G+F   N   A++ AGL    G++     + +  +  +PGR
Sbjct: 309 RKLPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
            +   T + G  + VDYAH   S+  ++  +++   + +IIVV G  GD+   +RP   +
Sbjct: 360 MQTERTKNHG-MVVVDYAHNKASMMALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSE 418

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
                AD A +T D+P  EDP+ I  EI  GI         + +R +AI  AI M    D
Sbjct: 419 SLSAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDD 478

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V+++ GKG +    +         D  + +E++
Sbjct: 479 VVLICGKGADAFQKIRGVNTPYPSDIVVAQEVI 511


>gi|15673788|ref|NP_267963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis Il1403]
 gi|13878593|sp|Q9CEN1|MURE_LACLA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|12724832|gb|AAK05904.1|AE006410_6 UDP-MurNac-tripeptide synthetase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407294|gb|ADZ64365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 483

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 215/492 (43%), Gaps = 91/492 (18%)

Query: 21  FPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +   W +E   +++S DSR      +F A       G  F  + +     A  VS     
Sbjct: 26  YYFNWPKEVNFDQLSYDSRKSTENTLFFA------KGLNFKKEYLTDLEAAFYVSEF--- 76

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136
            D+   +    P ++V + ++ ++L A+  Y   P+N    LA+TGT GK++ A F + I
Sbjct: 77  -DYEVAL----PAIIVTDVKRAMALIAASFY-DFPQNKLKTLALTGTKGKTTSAYFAKAI 130

Query: 137 CQRSGLSSFQIGPTSTISSFAQ---------DNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
                L     G T+ +S+ AQ          + LTTP  + L + ++   + G+TH+ +
Sbjct: 131 -----LDKMNGGKTALLST-AQTTLDGKNYFKSELTTPESLDLLEMMAKALTNGMTHLVM 184

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF----------- 234
           E SS      R+ G+    G F N+  DHI    H T + YF  K +L            
Sbjct: 185 EVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSRYFVANSE 244

Query: 235 --------EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                   EEL  ++ P   Y  D+ +K +  +    G   ++ G               
Sbjct: 245 MNHFAIIKEELKERKIPHAFYGADSENKIIESK----GLHFVTDG--------------- 285

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                  SV G    F   L G F   NAL  A    A+G     + + L  L VVPGR 
Sbjct: 286 -------SVSGA---FDIRLLGRFNQENALATALATKALGASLENIHDGL-ALAVVPGRM 334

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E + T   G  IY+DYAH   SLE +++ +    +G++++V G  G++ + +R   G++ 
Sbjct: 335 ELL-TAKNGAHIYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVI 393

Query: 407 LD--LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVL 462
                 D+ + TDD+ R EDP+ I  EI   +   ++ + +R  AI+ A+ +  +  D +
Sbjct: 394 EKHPRLDVILTTDDSNR-EDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAV 452

Query: 463 VVAGKGHETVHI 474
           ++AGKG +   +
Sbjct: 453 IIAGKGTDMFQL 464


>gi|99034316|ref|ZP_01314355.1| hypothetical protein Wendoof_01000846 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 264

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 92/152 (60%), Gaps = 7/152 (4%)

Query: 83  SATIRSNTPILVV---DNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQ 138
           SAT  +NTP   V    N ++      SR Y  K P+ + AVTGT+GK+SV  F +QI Q
Sbjct: 112 SATCMTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ 171

Query: 139 RSGLSSFQIGPTST-ISSFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            SG ++  IG   T I++  +DN   LTTP    L   L  ++S+ V  +++EASSHG+D
Sbjct: 172 NSGYNAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSHGID 231

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           Q+R+ G++  A +FTN  +DH+DYH++   YF
Sbjct: 232 QYRIHGLRFTAAAFTNFSQDHLDYHKSIDEYF 263


>gi|312869241|ref|ZP_07729413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095262|gb|EFQ53534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 516

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 146/509 (28%), Positives = 224/509 (44%), Gaps = 75/509 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIVVSSAYSLQDFSATIRS 88
           V+ DSR + AG +F    GN      F+P+    A  QGA A V    YS          
Sbjct: 32  VAYDSRKVTAGTLFFC-KGN------FLPKYLTMAKGQGAVAYVAEQEYSEG-------G 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + P ++V + +K ++L  +  YG  P++   I+A+TGT GK++ A     +  R+  +  
Sbjct: 78  DLPAIIVKDEQKAMALLGAAFYG-FPQDELTIIAITGTKGKTTTAYMADHVLGRA--TDH 134

Query: 146 QIGPTSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +   ST+        D+R    LTTP  + L   +      G+TH+ +E SS    +HR
Sbjct: 135 HVALFSTLDRVLGNGPDDRFKSDLTTPESLDLFHDMRAAVDNGMTHLVMEVSSQAYKKHR 194

Query: 199 LDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             G+    G F N+  DHI  + H T   Y + K    E+LL      +I A+ A   +V
Sbjct: 195 TYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSRVCLINAETADLADV 250

Query: 257 MKRAHNA------------GCRV-LSVGYQGKFIHLKKVCAIHNKQ----QVTISVE--G 297
              A               G +V L  G    F +   +  +H  +      T   E  G
Sbjct: 251 YYTAKATTQPEDIYLFARHGAQVQLPEGAAIDFEYRNDLEDLHESEFELAACTPKAERLG 310

Query: 298 KDFDFLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +   +PG++   NA+ A     L  A   D+A  L+H+     + GR E   T   
Sbjct: 311 LQRRYKTSVPGDYNEGNAVAAIISTALAGATAEDAAATLDHVH----IKGRMEMQKTRQH 366

Query: 355 GGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLADI 412
           G  IY+DYAH   SL+ +L  + R   +G++ VV G  GD+   +R   GK ++ +  D 
Sbjct: 367 G-TIYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFGKALSEEHPDQ 425

Query: 413 AIVTDDNPRSEDPEKIRAEI----IHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T D+P  EDP KI  EI     H   G I+   +R  AI+ AI+     D++V+AGK
Sbjct: 426 IILTTDDPGFEDPMKIAREINSHIDHDQVGEIQYIMDRPTAIKAAIDSSGNGDIVVLAGK 485

Query: 468 GHETVHIVTNGEKKMSVD----CDIIREI 492
           G +    +   +   + D     D I EI
Sbjct: 486 GEDPYQKINGVDTPYATDSKIAADYIHEI 514


>gi|330973393|gb|EGH73459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 170

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 11/155 (7%)

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           L+ L KL    GR + +G   +   + VDYAHT ++LE +L+ +R    GR++ +FGCGG
Sbjct: 1   LKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCGG 59

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------RI 446
           DRD+GKRP+M  +   LAD   VTDDNPRSE P  I  +I    PGF+          R 
Sbjct: 60  DRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDDI---RPGFVAADKVRFIEGRG 116

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           +AI   I   +  DV+V+AGKGHE    + NG+++
Sbjct: 117 QAIAELIASASADDVVVLAGKGHEDYQEI-NGQRQ 150


>gi|281492399|ref|YP_003354379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376063|gb|ADA65554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 483

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 215/492 (43%), Gaps = 91/492 (18%)

Query: 21  FPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +   W +E   +++S DSR      +F A       G  F  + +     A  VS     
Sbjct: 26  YYFNWLKEVNFDQLSYDSRKSTENTLFFA------KGLNFKKEYLTDLEAAFYVSEF--- 76

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136
            D+   +    P ++V + ++ ++L A+  Y   P+N    LA+TGT GK++ A F + I
Sbjct: 77  -DYEVAL----PAIIVTDVKRAMALIAASFY-DFPQNKLKTLALTGTKGKTTSAYFAKAI 130

Query: 137 CQRSGLSSFQIGPTSTISSFAQ---------DNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
                L     G T+ +S+ AQ          + LTTP  + L + ++   + G+TH+ +
Sbjct: 131 -----LDKMNGGKTALLST-AQTTLDGKNYFKSELTTPESLDLLEMMAKALTTGMTHLVM 184

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF----------- 234
           E SS      R+ G+    G F N+  DHI    H T + YF  K +L            
Sbjct: 185 EVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSRYFVANSE 244

Query: 235 --------EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                   EEL  ++ P   Y  D+ +K +  +    G   ++ G               
Sbjct: 245 MNHFAIIKEELKERKIPHAFYGADSENKIIESK----GLHFVTDG--------------- 285

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                  SV G    F   L G F   NAL  A    A+G     + + L  L VVPGR 
Sbjct: 286 -------SVSGA---FDIRLLGRFNQENALATALATKALGASLENIHDGL-ALAVVPGRM 334

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E + T   G  IY+DYAH   SLE +++ +    +G++++V G  G++ + +R   G++ 
Sbjct: 335 ELL-TAKNGAHIYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVI 393

Query: 407 LD--LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVL 462
                 D+ + TDD+ R EDP+ I  EI   +   ++ + +R  AI+ A+ +  +  D +
Sbjct: 394 EKHPRLDVILTTDDSNR-EDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAV 452

Query: 463 VVAGKGHETVHI 474
           ++AGKG +   +
Sbjct: 453 IIAGKGTDMFQL 464


>gi|227894010|ref|ZP_04011815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864211|gb|EEJ71632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 523

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 209/495 (42%), Gaps = 79/495 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84
           K+  VS DSR IQ   +F         G  F P  ++     GA   V    Y       
Sbjct: 30  KMEYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
                   L+V +  K ++L ++  + + P++   ++A TGT GK++ A F++ +  ++ 
Sbjct: 80  ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQAN 135

Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                 +SS    +GP     SF   + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 136 GGKTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             ++R+ G+    G F N+  DHI  + H     Y + K+    +L+      II A+ A
Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETA 248

Query: 252 YSKEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNK 288
           +  E+   A                            R  S     K    K  CA    
Sbjct: 249 HFNEIYAAATTTTNPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLYCASDKA 308

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +++ I+      D+   + G+F   N   A++ AGL    G++     + +  +  +PGR
Sbjct: 309 RKLDING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
            +   T S G  + VDYAH   S+  ++  ++      +IIVV G  GD+   +RP   +
Sbjct: 360 MQTERTKSHG-MVVVDYAHNKASMMALMSFMQNEFNDPKIIVVVGAPGDKGISRRPGFSE 418

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
                AD A +T D+P  EDP+ I  EI  GI         + +R +AI  AI M   +D
Sbjct: 419 SLTAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPKD 478

Query: 461 VLVVAGKGHETVHIV 475
           V+++ GKG +    V
Sbjct: 479 VVLICGKGADAFQKV 493


>gi|218184973|gb|EEC67400.1| hypothetical protein OsI_34565 [Oryza sativa Indica Group]
          Length = 889

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 202/441 (45%), Gaps = 40/441 (9%)

Query: 13  ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+     ++  +  V  D+  + AG ++V +    E+G   + +A  +GA 
Sbjct: 229 ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV---GEEGLAGLTEADKRGAV 285

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A+V        D   T+     +++VD+    L +  + LY +  ++  ++ V GT G +
Sbjct: 286 AVVADQTV---DIEGTLACRA-LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDGVT 341

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRL-----TTPSPIYLAKALSYLSSQG 181
           + A  V+ + +  G+ +  +G    + ++A  +N+L      +  PI + + ++ +   G
Sbjct: 342 TTAHLVRAMYEAMGVRTGMVG---VLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
                +E ++ G+    +D  I       TN+     +   T + Y N+   LF  ++ P
Sbjct: 399 AEAALLEVTTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEG 297
           +    ++  DD  S             V++  ++ K   +H  K      + +V +    
Sbjct: 459 ERHRKVVNIDDP-SAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPH 517

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L G   +YN L +  + +A+G     +++ +E++  +PGR E +      G 
Sbjct: 518 GILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFG- 576

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGK 404
           + VD+A T  SL  +L  ++ +   RI+             VV GC G+R++GKRP+M K
Sbjct: 577 VIVDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTK 636

Query: 405 IALDLADIAIVTDDNPRSEDP 425
           +A + +D+ ++T DNP +EDP
Sbjct: 637 VAAEKSDVVMLTSDNPANEDP 657


>gi|315039137|ref|YP_004032705.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325957608|ref|YP_004293020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|312277270|gb|ADQ59910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325334173|gb|ADZ08081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|327184253|gb|AEA32700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 523

 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 209/490 (42%), Gaps = 79/490 (16%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84
           K++ VS DSR IQ   +F         G  F P  ++     GA   V    Y       
Sbjct: 30  KMDYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
                   L+V +  K ++L ++  + + P++   ++A TGT GK++ A F++ +  ++ 
Sbjct: 80  ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQAN 135

Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                 +SS    +GP     SF   + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 136 GGKTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             ++R+ G+    G F N+  DHI  + H     Y + K+    +L+      II A+ A
Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETA 248

Query: 252 YSKEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNK 288
           +  E+   A                            R  S     K    K  CA    
Sbjct: 249 HFDEIYAAATTTTNPDSIYLFARENFENPDLKVPIDFRFASQELDMKETRFKLYCASDKA 308

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +++ I+      D+   + G+F   N   A++ AGL    G++     + +  +  +PGR
Sbjct: 309 KKLPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
            +   T S G  + VDYAH   S+  ++  ++    + +IIVV G  GD+   +RP   +
Sbjct: 360 MQTERTKSHG-MVVVDYAHNKASMMALMSFMQNEFDNPKIIVVVGAPGDKGVSRRPGFSE 418

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
                AD A +T D+P  EDP+ I  EI  GI         + +R +AI  AI M    D
Sbjct: 419 SLTAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDD 478

Query: 461 VLVVAGKGHE 470
           V+++ GKG +
Sbjct: 479 VVLICGKGAD 488


>gi|225377873|ref|ZP_03755094.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM
           16841]
 gi|225210311|gb|EEG92665.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM
           16841]
          Length = 195

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 10/141 (7%)

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            +VPGR + + T   G    +DYAH   SL  +L+ +R     R+IV+FGCGG+R   +R
Sbjct: 26  QIVPGRCQNM-TAGTGYVFLIDYAHNEMSLRNLLETLRKFKPARLIVIFGCGGNRSVLRR 84

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---------PGFIEKGNRIEAIR 450
             MG+ A  LAD  I+T DNPR EDPE+I  +I  G+         P +I+  +R  A+ 
Sbjct: 85  YQMGETAGRLADFTIITSDNPRWEDPERIMNQIEDGLRGAVCAGEKPSYIKISDRRAAVE 144

Query: 451 TAIEMLNKQDVLVVAGKGHET 471
            A+ M  K+D++V+AGKGHE+
Sbjct: 145 YAVSMAEKRDIIVLAGKGHES 165


>gi|325684938|gb|EGD27082.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 516

 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 133/513 (25%), Positives = 218/513 (42%), Gaps = 75/513 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + ++  VS DSR +Q   +F      K  G    ++  A   GA A V    Y       
Sbjct: 28  QTRMEAVSYDSRDVQNNSLFFC----KGAGFRPTYLTMAKENGAIAYVAEQPYPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
              +    L+V N  K ++L ++  Y + P++   ++  TGT GK++ A F++ +     
Sbjct: 80  ---TGMHALIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGM----- 130

Query: 142 LSSFQIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           L     G T+ +SS              + LTTP  + L + +      G+TH+ +E SS
Sbjct: 131 LDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSS 190

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
               ++R+ G+    G F N+  DHI  + H   + Y + K+    +LL      II A+
Sbjct: 191 QAYKKNRVFGLTYDLGFFLNISPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAE 246

Query: 250 -----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
                D Y+        ++       G++     LKK      K   T   E K F    
Sbjct: 247 TDRFADVYAAATTTTNPDSIYLFARDGFENP--DLKKPIDFRYKSVETDLAETK-FTLTT 303

Query: 304 -------FPLPGEFQV-----YNALVAAGLCIAIGI------DSALVLEHLEKLHVVPGR 345
                   P+ GE+ +     +N   A G  I  G+      D A  + H+     +PGR
Sbjct: 304 ASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHV----TIPGR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E V T  + G I VDYAH   S+  +++ +R   T+ RIIVV G  GD+   +R    +
Sbjct: 360 METV-TTQKHGLIVVDYAHNKASMLALMRFMRREFTNPRIIVVVGAPGDKGISRRQGFSE 418

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
                AD A +T D+P  E+ + I  EI  GI       + + +R +AI+ AI      D
Sbjct: 419 SLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPND 478

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V+++ GKG +    +   +   + D  I R+++
Sbjct: 479 VVLLCGKGADAFQKIRGVDTPYAGDIVIARQVV 511


>gi|163815921|ref|ZP_02207291.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
 gi|158448731|gb|EDP25726.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
          Length = 507

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 205/491 (41%), Gaps = 54/491 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ +S+ +  G  FV    + ++ +L    AI+QGA   +    Y   D         P 
Sbjct: 35  ITINSKDVVPGTFFVCKGASFKEEYL--KSAISQGAIVYLSQQKYDGVDI--------PY 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAV----------TGTSGKSSVASFVQQICQRSGL 142
           ++V + RK ++L A   +G   +N+  V               K  +  +    C  +  
Sbjct: 85  IIVSDIRKAMALAARWFFGNPGDNLTKVGITGTKGKTTVTFVMKDILDKYTDNRC--AAF 142

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S+ +I     + +   +  LTTP PI L        ++G TH  +E SS  +  +R+ G 
Sbjct: 143 STHEID----VGTKVFETTLTTPEPIELQTYFDMAVNEGCTHCIMEVSSQAMKMNRIYGE 198

Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-------- 252
               G FTN+  DHI    H + + Y   K+   ++        ++Y+D  Y        
Sbjct: 199 HYKVGVFTNIDYDHISPTEHASMEDYLGCKVSFLKQC----DNVVLYSDTRYFETIYNEV 254

Query: 253 -SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFP 305
             K V+          L       F    +  +IHN+          +   G++  +   
Sbjct: 255 RDKHVVVYGSKESVEKLMSRDDDFFEKDTEFASIHNEDLTDHNSYFELIYGGENRAYNTN 314

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G++ V N + A    + IGI +  +   +  ++V PGR +      R     +DYAH 
Sbjct: 315 LIGDYNVENIVAAIISSLLIGIPNEQIRSSIRDIYV-PGRLQVYHWKDRT--FMIDYAHN 371

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             S+  + + ++ T+    I VVFGCGG+R + +R  MG++A   AD  ++T ++P  E 
Sbjct: 372 YISMYRLYEMVKKTMKPKSITVVFGCGGERYKKRREDMGRLAEQYADKVVLTMEDPGFES 431

Query: 425 PEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            E I  EI   I  P +I   +R EA+  A++     ++++  GKG E+   +     + 
Sbjct: 432 CEDICKEIKQYITKPCYI-IVDREEALTRALDEAQPGELVITTGKGIESTQRINGTFVQC 490

Query: 483 SVDCDIIREIL 493
             D  +I   L
Sbjct: 491 HSDAQVIEHWL 501


>gi|60117246|gb|AAX14404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 143

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 85/137 (62%)

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V H+ +E+SSHG+DQ+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF E+LP+ 
Sbjct: 6   VEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEG 65

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI+ AD      ++K A     +V++ G +G  I L +  +  N Q +T+ ++ + ++
Sbjct: 66  KTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDNQIYN 125

Query: 302 FLFPLPGEFQVYNALVA 318
             FP+ G+FQ YN L A
Sbjct: 126 TFFPVLGKFQAYNLLCA 142


>gi|326692780|ref|ZP_08229785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 495

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 192/422 (45%), Gaps = 25/422 (5%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQR-----SGL 142
           P   V + +K LS+ +   +  +P+N L   A TGT GK++ A    QI Q      + L
Sbjct: 75  PQWQVTDVQKALSVLSMAFF-DYPQNDLWIGAFTGTKGKTTAAYMAFQILQHMTNQHTAL 133

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            S     T    +  + + LTTP    L K +      G+TH+ +E SS    + R+ G+
Sbjct: 134 FSTVDRITGNQPADKKKSDLTTPESYELFKDMRRAVDNGMTHLVMEVSSQAYLKQRVYGL 193

Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KR 259
           +   G+F N+  DHI  + H + + Y   KM L +     E   +  A D  S  +   +
Sbjct: 194 EFQVGAFLNISPDHIGPNEHPSFEDYLAHKMMLLDH---AEQVIVNAASDQLSAVLAHAK 250

Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNAL 316
            H+      S   Q G++ +     AIH  +      +  + +  +   LPG+F   NAL
Sbjct: 251 THHDHVYTYSQTDQGGEYTYQSLESAIHESRFTVAESDLAEMNGTYRLNLPGDFNESNAL 310

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +    G   A ++  L+ +  +PGR   +      G  +VDYAH   S+  +L+  
Sbjct: 311 AALIMTALAGAQHADMVAGLDTV-FIPGRMLSLPIPDH-GVAFVDYAHNYASMRALLQFA 368

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++    G++ VV G  G++   +R   G++  + AD   +T D+P+ E P  I  EI   
Sbjct: 369 QSQYPDGKVSVVIGAPGNKGVSRRADFGRVVSEFADTVFLTADDPQFESPMAIAKEIAAH 428

Query: 436 I--PGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           I  P      + +RI+AI+ AI   N  D+++VAGKG +    +   ++    D  +++ 
Sbjct: 429 ITNPDVTVHFEMDRIQAIQQAIAQANPHDIVIVAGKGEDPYQKINGVDEPYIGDYAVVQN 488

Query: 492 IL 493
           +L
Sbjct: 489 VL 490


>gi|116332750|ref|YP_794277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis ATCC 367]
 gi|116098097|gb|ABJ63246.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus brevis ATCC
           367]
          Length = 504

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 131/497 (26%), Positives = 201/497 (40%), Gaps = 66/497 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR +QA  +FV    N    +L    AI  GA A +    Y +         + P+
Sbjct: 31  LTYDSRQVQANTLFVCKGFNFSVDYLH--SAIENGATAYLAEEDYGV---------SVPV 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA------------SFVQQICQRS 140
           ++V N RK LSL A++LY   P+N L V G +G                 +F QQ+   S
Sbjct: 80  ILVKNVRKALSL-AAQLYFDFPQNDLFVIGYTGTKGKTTSTYLTTNILSHAFPQQVAMFS 138

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++   +GP       A    LTT     L K +      G   + +E +S      R+ 
Sbjct: 139 TINHI-VGPKPQDQYRAH---LTTAESFDLFKEMRQAVDNGQKVLVMEVASQAYLLDRVY 194

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+    G F N+  DHI  + H     Y   KM    +LL      II A+  +  E+  
Sbjct: 195 GLTFDVGIFLNISPDHIGVNEHPNFANYLFCKM----QLLLNSRNCIINAETDHFDEIYA 250

Query: 259 RAH-------------NAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            A              N     LS+   Q           +H+++   ++       +  
Sbjct: 251 AAKVSTDPEHIFTYGFNQAQASLSITSRQATLTDSHFDLTVHDERLAALATT-----YDV 305

Query: 305 PLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            +PG+F   N   A++A+ L  A   D    L H      +PGR E + T    G +Y+D
Sbjct: 306 SVPGDFNQSNSAAAILASHLAGAQVADMQYGLAHTR----IPGRMESI-TTKHHGTVYID 360

Query: 362 YAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S+  +L  + T     R+I V G  GD+ + +R    K   D AD A +T D+P
Sbjct: 361 YAHDWGSMNALLSFLHTQFPDHRVIAVLGSTGDKGEDRREGFAKALNDYADAAYLTTDDP 420

Query: 421 RSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             EDP  I  EI   I     K      R  AI  AI      D++V+AGKG +    + 
Sbjct: 421 GHEDPMAIAREIDSHIDHTKVKTTIIAQRETAIAQAITTATNTDLVVLAGKGEDAYQKIN 480

Query: 477 NGEKKMSVDCDIIREIL 493
             +   + D  + ++++
Sbjct: 481 GVDTPYASDPVVAQDVI 497


>gi|58338066|ref|YP_194651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus NCFM]
 gi|75357189|sp|Q5FI54|MURE_LACAC RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|58255383|gb|AAV43620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus acidophilus NCFM]
          Length = 523

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 207/488 (42%), Gaps = 75/488 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           K++ VS DSR IQ   +F      K  G    ++  A + GA   V    Y         
Sbjct: 30  KMDYVSYDSRDIQTNTLFFC----KGAGFRPTYLSMAKSNGANCYVAEQPYPEG------ 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG-- 141
                 L+V +  K ++L ++  + + P++   ++A TGT GK++ A F++ +  ++   
Sbjct: 80  -KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGG 137

Query: 142 ----LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               +SS    +GP     SF   + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 138 RTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYK 194

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           ++R+ G+    G F N+  DHI  + H     Y + K+    +L+      II A+ A  
Sbjct: 195 KNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETANF 250

Query: 254 KEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            EV   A                            R  S     K    K  CA    ++
Sbjct: 251 NEVYAAATTTTNPDSIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKK 310

Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + I+      D+   + G+F   N   A++ AGL    G++     + +  +  +PGR +
Sbjct: 311 LPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRNV-TIPGRMQ 361

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              T   G  + VDYAH   S+  +++ ++      +IIVV G  GD+   +RP   +  
Sbjct: 362 TERTKEHG-MVVVDYAHNKASMMALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESL 420

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
              AD A +T D+P  EDP+ I  EI  GI         + +R +AI  AI      DV+
Sbjct: 421 SAYADKAFLTTDDPGFEDPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVV 480

Query: 463 VVAGKGHE 470
           ++ GKG +
Sbjct: 481 LICGKGAD 488


>gi|227902756|ref|ZP_04020561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|227869419|gb|EEJ76840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 532

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 207/488 (42%), Gaps = 75/488 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           K++ VS DSR IQ   +F      K  G    ++  A + GA   V    Y         
Sbjct: 39  KMDYVSYDSRDIQTNTLFFC----KGAGFRPTYLSMAKSNGANCYVAEQPYPEG------ 88

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG-- 141
                 L+V +  K ++L ++  + + P++   ++A TGT GK++ A F++ +  ++   
Sbjct: 89  -KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGG 146

Query: 142 ----LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               +SS    +GP     SF   + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 147 RTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYK 203

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           ++R+ G+    G F N+  DHI  + H     Y + K+    +L+      II A+ A  
Sbjct: 204 KNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETANF 259

Query: 254 KEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            EV   A                            R  S     K    K  CA    ++
Sbjct: 260 NEVYAAATTTTNPDSIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKK 319

Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + I+      D+   + G+F   N   A++ AGL    G++     + +  +  +PGR +
Sbjct: 320 LPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRNV-TIPGRMQ 370

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              T   G  + VDYAH   S+  +++ ++      +IIVV G  GD+   +RP   +  
Sbjct: 371 TERTKEHG-MVVVDYAHNKASMMALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESL 429

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
              AD A +T D+P  EDP+ I  EI  GI         + +R +AI  AI      DV+
Sbjct: 430 SAYADKAFLTTDDPGFEDPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVV 489

Query: 463 VVAGKGHE 470
           ++ GKG +
Sbjct: 490 LICGKGAD 497


>gi|256851857|ref|ZP_05557245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661882|ref|ZP_05862792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931965|ref|ZP_06337429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297205481|ref|ZP_06922877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615815|gb|EEU21004.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547351|gb|EEX23331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303907|gb|EFA96045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297150059|gb|EFH30356.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 516

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 209/483 (43%), Gaps = 69/483 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84
           K++ +S DSR IQ   +F         G  F P  ++     GA   V    +       
Sbjct: 30  KMDYISYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGATCYVAEQPFPEG---- 79

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR-- 139
                   LVV +  K ++L ++  Y + P++   ++A TGT GK++ A F++ I  +  
Sbjct: 80  ---KGMHALVVRDVTKAMALLSAAFY-RFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMN 135

Query: 140 SGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            G ++        +    +D   + LTTP  + L + +      G+TH+ +E SS    +
Sbjct: 136 GGKTALFSSVNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKK 195

Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +R+ G+    G F N+  DHI  + H     Y + K+    +LL      II A+  +  
Sbjct: 196 NRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETDHFP 251

Query: 255 EVMKRA-----------------HNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTI 293
           EV   A                  N   +V    L    +   I  K      + +   +
Sbjct: 252 EVYAAATTTTNPDSIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHL 311

Query: 294 SVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++EG   ++   + G+F   N   A++ AGL  A    ++  + H+     + GR E   
Sbjct: 312 AIEG---EYTLDMIGDFNEINGTAAIIGAGLGGANHEHASEGIRHV----TISGRMETEK 364

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T + G  + VDYAH   S+  ++  ++   ++ +IIVV G  GD+   +RP   +     
Sbjct: 365 TKNHG-LVVVDYAHNKASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVF 423

Query: 410 ADIAIVTDDNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD A +T D+P  EDP    E+I A I H       + +R +AIR AI M  K DV+++ 
Sbjct: 424 ADKAFLTTDDPGFEDPMDIAEEIDAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLIC 483

Query: 466 GKG 468
           GKG
Sbjct: 484 GKG 486


>gi|259502140|ref|ZP_05745042.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
 gi|259169953|gb|EEW54448.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
          Length = 516

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 227/512 (44%), Gaps = 77/512 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIVVSSAYSLQDFSATIRS 88
           V+ DSR + AG +F    GN      F+P+    A  QGA A V    Y           
Sbjct: 32  VAYDSRKVTAGTLFFC-KGN------FLPKYLTMAREQGAVAYVAEQEYPEG-------G 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + P ++V + ++ ++L  +  YG  P++   I+A+TGT GK++ A     I  R+  +  
Sbjct: 78  DLPAIIVKDEQEAMALLGAAFYG-FPQDELTIIAITGTKGKTTTAYMADHILGRA--TDQ 134

Query: 146 QIGPTSTISS---------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +   ST+           F  D  LTTP  + L   +      G+TH+ +E SS    +
Sbjct: 135 HVALFSTLDRVLGNRPADRFKSD--LTTPESLDLFHDMRAAVDNGMTHLVMEVSSQAYKK 192

Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           HR  G+    G F N+  DHI  + H T   Y + K    E+LL      +I A+ A+  
Sbjct: 193 HRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSGICLINAETAHLT 248

Query: 255 EVMKRA--------------HNAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQV 291
           +V   A              H A  ++     +   Y+     L +    + A   K Q 
Sbjct: 249 DVYYTAKATTQPENIYLFARHGAAVQLPDGAAIDFEYRNDLEDLHESEFELAACSPKAQ- 307

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++G+   +   +PG++   NA+ A       G  +A  +  L+ +H+  GR E   T
Sbjct: 308 QLGIQGR---YKTSVPGDYNEGNAVAAVISTALAGATAADAVATLDHVHI-KGRMEMQKT 363

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDL 409
              G  IY+DYAH   SL+ +L  + R   +G++ VV G  GD+   +R   GK ++ + 
Sbjct: 364 RQHG-TIYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFGKALSEEH 422

Query: 410 ADIAIVTDDNPRSEDPEKIRAEI----IHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
            D  I+T D+P  EDP KI  EI     H   G ++   +R  AI+ AI+  +  D++V+
Sbjct: 423 PDQIILTTDDPGFEDPMKIAREINSHIDHDQVGAVQYIMDRPTAIKAAIDSSSNGDIVVL 482

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           AGKG +    +   +   + D  I  + +  I
Sbjct: 483 AGKGEDPYQKINGVDTPYATDSKIAADYIDEI 514


>gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 350

 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 13/223 (5%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR ++ G ++VAI G + DGH FI +A+++GA  +V     SL D    +  + P + V 
Sbjct: 6   SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVD----VPPDVPYVRVT 61

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           + R+  S  ++R+YG  P   L V G +G +   + V  +      +  ++G  S++  F
Sbjct: 62  SARRAASALSNRVYG-FPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSV--F 118

Query: 157 AQDNRLTTPSPIY------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            +    T P+ +       L +AL  +   G TH  +E SSHG+ QHR   +      FT
Sbjct: 119 NETGLRTVPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLAIFT 178

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           NL R+H+D+H + + Y  AK RLF  L  ++  AI+  DD Y+
Sbjct: 179 NLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYA 221



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRI 446
           G+RD+GKRP MG IA  LAD  ++T D+  SEDPE+I  EI+ G             +R 
Sbjct: 246 GERDRGKRPEMGAIAASLADHVLITTDSSYSEDPERIANEILAGAQRVHRARCDVVLDRA 305

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +AI  A+   N +DV+++ G+GHE+  +V  G +    D D++RE
Sbjct: 306 QAIERAVIEANDEDVILITGRGHESFQVV-GGLRLEQTDADMVRE 349


>gi|326803791|ref|YP_004321609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651729|gb|AEA01912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 504

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 120/498 (24%), Positives = 221/498 (44%), Gaps = 40/498 (8%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P+   +  +  +S +S+ +  G +F     + +  +L   QA A GA A V    Y L  
Sbjct: 21  PLLTSQASVQNLSYNSKAVSEGTLFFCKGAHFKPAYL--EQAQALGAIAYVSEQDYGLDL 78

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           +         ++ V++ R  + + A   Y + P     +TG +G     +    + +   
Sbjct: 79  Y---------LIQVEDIRLAMPIIADFFY-QAPYQAFHLTGITGTKGKTTTTFYLTKILD 128

Query: 142 LSSFQIG--PTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           L    +G  PT+ +SS +        ++ LTTP  + L    +++    +  +++E SS 
Sbjct: 129 LYQESLGKEPTAYLSSSSYYDGVDQGESHLTTPESLELFYRFNHVRESAIDFMTMEVSSQ 188

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            L  HR+  +    G+F N+  DHI    H   + YF +K++LF++       A+I  D 
Sbjct: 189 ALKYHRVAEVPFEVGAFLNISTDHISPSEHPNFEDYFMSKLKLFDQ----SQLAVINLDA 244

Query: 251 AYSKEVMKRAHNAGC--RVLSVGYQG-KFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPL 306
            +   + +RA ++    ++++V  +  K  +L K + +  ++Q   +     + +    +
Sbjct: 245 DHIDRIYQRASDSKTVKKIVTVSTKDEKADYLAKNIVSGSDQQHFVLHAPDFEGEIRMKM 304

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V NALVA  +     +   ++ + L+      GR E   +  +     VD+AH  
Sbjct: 305 LGRFNVENALVAIAIARYYQVPYEIIKKALQAAQT-EGRMEVYHSTDKRIHAIVDFAHNK 363

Query: 367 NSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            SLE + +  R +      IVVFG  GD+   +R  +G++A   AD  I+T D+P +E  
Sbjct: 364 LSLEKLFEASRQMYPKAHSIVVFGSAGDKAISRRKDLGEVAAQYADEIILTMDDPGTESV 423

Query: 426 EKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVTNG 478
           EKI  EI   I     +     NR +AI  A +  +  D   V+++AGKG E    +   
Sbjct: 424 EKICQEINQPIQAAQRQAKIIPNRPQAIDYAFQQASAYDGEVVVLIAGKGDEDTMKINGV 483

Query: 479 EKKMSVDCDIIREILGLI 496
           ++    D   +++ L  I
Sbjct: 484 DQAYPTDRYYVKQALEEI 501


>gi|315641870|ref|ZP_07896862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
 gi|315482438|gb|EFU72978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
          Length = 514

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 123/525 (23%), Positives = 218/525 (41%), Gaps = 56/525 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWR---------ERKINEVSSDSRHIQAGWIFVAIVGN 52
           KL+D+      E + +  I   QW          +   + +S DSR      +F      
Sbjct: 14  KLKDIYAVLLREKMLKEVIIQQQWHITLPDHPIVDHVFHSLSYDSREADEATLF--FCKG 71

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           ++   +F+ QA+  G +  V    Y   D           L+V + R+ +++ A   Y  
Sbjct: 72  QQFKEVFLEQAVTGGVKVYVSEQPYDSIDAVG--------LIVTDIREAMAMIAQFFY-D 122

Query: 113 HPENILA---VTGTSGKSSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPS 166
           HPEN L    +TGT GK+S A F++   +++     + F    T+        + LTTP 
Sbjct: 123 HPENKLTKIGITGTKGKTSCAYFLKDSLEQATNHKTALFSSEETTLDGVHYTRSHLTTPE 182

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQ 224
            + L K ++     G+TH+ +E SS      R+ G+    G F N+  DHI    H T  
Sbjct: 183 ALDLYKQMAKAVENGLTHLVMEVSSQAYKTKRVFGLTFELGIFLNISPDHISPIEHPTFD 242

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y   K +L +         I+ AD  Y + + +      C +  V Y      L     
Sbjct: 243 DYLYCKRQLIQH----SKQMILNADSDYFELLAET-----CTLYHVPYVTFGRSLTVDVE 293

Query: 285 IHNKQQV--------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I +            T+S    +  +   + G F   NA  A  +   +G    +  + +
Sbjct: 294 IQDATDTRSFDLIAHTLSFSDLEGGYRLAILGTFNHDNATAALLVSHLLGFSEKISRQAI 353

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGD 393
               V+PGR   +   ++   I +D+AH   S++ + +   ++R   +G++I++ G  G 
Sbjct: 354 ANT-VIPGRMHVIDEPNQP-LILIDFAHNYLSIKAVGELGHHLRP--NGKVIILTGSTGG 409

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           +   +R  + K   ++AD AI+T D+P  EDP  I  EII  I         +  R +AI
Sbjct: 410 KALSRRADIAKALSEIADEAILTSDDPNFEDPAAIAKEIISHIDNDALSITVETQREKAI 469

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             A+     +D++ + GKG E    +    +    D ++++++L 
Sbjct: 470 AIALSHATTEDIVAICGKGTEKEMKINGLGEPYPGDYEVVQQLLN 514


>gi|257877011|ref|ZP_05656664.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
 gi|257811177|gb|EEV39997.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
          Length = 506

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 213/503 (42%), Gaps = 73/503 (14%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+ + K+     + +   P +  +     +S DSR   A  +F     + ++ +L    
Sbjct: 16  LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFCKGASFKESYL--AA 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---A 119
           AI QG +  +  + Y   +F+      T  ++V + R+ +++ A   YG HP+  L    
Sbjct: 74  AIDQGIQCYISETPYD--NFA------TYGIIVTDIRETMAVIAQAFYG-HPQEQLVTIG 124

Query: 120 VTGTSGKSSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +TGT GK+S A F + I   S    ++ F     S       +  LTTP  + L K ++ 
Sbjct: 125 ITGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAE 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ GI    G+F N+  DHI                   
Sbjct: 185 AVANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIG------------------ 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVT--- 292
             P E P   Y D  Y K  + R      + + +  Q    H L++ C +H    +T   
Sbjct: 227 --PVEHPT--YDDYLYCKRELIR----NSKQMILNRQSDHYHLLRETCEVHQVPYITYGR 278

Query: 293 -----ISVEGKDF--------DFLFPLPGEFQV-------YNALVAAGLCIAIGIDSALV 332
                +  EG D           +  + GE+Q+       +    AA L   +   S   
Sbjct: 279 SDADYVVQEGTDLKGFALSAASDVLQVSGEYQLGILGSFNHENAAAAILAACLAGASRED 338

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG 391
            + +    ++PGR   V     G  + VDYAH   S + + +  R +   GR++ V G  
Sbjct: 339 AQKVLPTVIIPGRM-IVLEKENGAVMIVDYAHNYLSFQSLSELARQLRPEGRLLFVTGSA 397

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447
           G + Q +R  MG+   + AD   +T D+P  E+ + I  EI   I       I + +R +
Sbjct: 398 GGKAQSRRADMGRALGEYADKVYLTSDDPDFEEADAIAKEIAAAITNPEVAIIHEMDRAQ 457

Query: 448 AIRTAIEMLNKQDVLVVAGKGHE 470
           A+++AI   + +D++++AGKG E
Sbjct: 458 AVKSAIAEADSKDIVIIAGKGAE 480


>gi|257866935|ref|ZP_05646588.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257873268|ref|ZP_05652921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
 gi|257800991|gb|EEV29921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257807432|gb|EEV36254.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
          Length = 506

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 214/506 (42%), Gaps = 79/506 (15%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+ + K+     + +   P +  +     +S DSR   A  +F     + ++ +L    
Sbjct: 16  LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFCKGASFKESYL--AA 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---A 119
           AI QG +  +  + Y   +F+      T  ++V + R+ +++ A   YG HP+  L    
Sbjct: 74  AIDQGIQCYISETPYD--NFA------TYGIIVTDIRETMAVIAQAFYG-HPQEQLVTIG 124

Query: 120 VTGTSGKSSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +TGT GK+S A F + I   S    ++ F     S       +  LTTP  + L K ++ 
Sbjct: 125 ITGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAE 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ GI    G+F N+  DHI                   
Sbjct: 185 AVANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIG------------------ 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISV 295
             P E P   Y D  Y K  + R      + + +  Q    H L++ C +H  Q   I+ 
Sbjct: 227 --PVEHPT--YDDYLYCKRELIR----NSKQMILNRQSDHYHLLRETCEVH--QVPYITY 276

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL---------------------- 333
              D D++     + + + AL AA   + +  +  L +                      
Sbjct: 277 GRSDADYVVQEGADLKGF-ALSAASDVLQVSGEYQLGILGSFNHENAAAAILAACLAGAS 335

Query: 334 -EHLEKLH---VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
            E  +K+    ++PGR   V     G  + VDYAH   S + + +  R +   GR++ V 
Sbjct: 336 REDAQKVLPTVIIPGRM-IVLEKENGAVMIVDYAHNYLSFQSLSELARQLRPEGRLLFVT 394

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGN 444
           G  G + Q +R  MG+   + AD   +T D+P  E+   I  EI   I       I + +
Sbjct: 395 GSAGGKAQSRRADMGRALGEYADKVYLTSDDPDFEEASAIAKEIAAAITNPEVAIIHEMD 454

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHE 470
           R +A+++AI   + +D++++AGKG E
Sbjct: 455 RAQAVKSAIADADSKDIVIIAGKGAE 480


>gi|225377874|ref|ZP_03755095.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
 gi|225210312|gb|EEG92666.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
          Length = 337

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 138/319 (43%), Gaps = 36/319 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RKI ++   S  ++ G +FV I G + +GH ++PQA+  GA  +VV   Y ++  S  +
Sbjct: 21  DRKITDICCHSEKVKEGSLFVCINGYRNNGHEYVPQAVEHGAAVLVVDDRYVIESRSGPV 80

Query: 87  ---------------RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128
                            N  ++ V +TRK LS  ++  +  HP     ++ +TGT+GK++
Sbjct: 81  ILTEHMKVNVYELIRDRNICVVAVRDTRKALSALSAAFF-DHPAERMKMIGITGTNGKTT 139

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184
            A     I Q +G   +++G   TI S+    R     TTP    + + LS +       
Sbjct: 140 TAFLTAGILQEAG---YRVGMIGTIESYDGRRRETVKNTTPESCEIHRLLSRMVENECDC 196

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKES 242
             +E SS G+   R   I    G F N+  DHI    H T   Y   K RL  +      
Sbjct: 197 CVMEVSSQGIALQRTADIFFDIGVFLNIEPDHIGKGEHATFSEYLYCKSRLMRQC----G 252

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKD 299
             I+  DD    +++   H       S+ +    +   +   + +   +   T+  E + 
Sbjct: 253 IGIVNQDDPNVDKILA-GHTCEVENFSIRHPSDVMAEDEWYGMESGSLQSHFTVKREWRR 311

Query: 300 FDFLFPLPGEFQVYNALVA 318
            D +  LPG+F +YNAL A
Sbjct: 312 EDIVMQLPGQFNIYNALAA 330


>gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 511

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 179/408 (43%), Gaps = 44/408 (10%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             +++N L I    +   +E +I  ++  +  +  G IFVAI G   DGH FI +A   G
Sbjct: 3   LEKILNNLDIIDANFEIDKEIEIKNIAFHTDDVVEGGIFVAIKGYVTDGHKFIKKARELG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           AE  VV      +D+S     N   + V+N+R  L+  A   Y    +  N++ +T T+G
Sbjct: 63  AEIAVV------EDYS---EENIKQIRVENSRIALADMARNFYEDPSKDMNVIGITATNG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ A  V  I +    ++  IG   T  +     + LTTP  + L      +  +GVT 
Sbjct: 114 KTTTAFMVNSILEEDKRNTGIIGTVLTRYADVMIPSVLTTPESLTLQSYFRDMKDKGVTD 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SS   + +R   I     +F NLGR+HID H + + YF  K RL      +++ A
Sbjct: 174 VTMEVSSSAQELYRNKNIDFDIVTFNNLGREHIDQHGSFENYFRFKSRLIRH-AKEDALA 232

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----------------GKF-IHLKKVCAIH 286
           I+ ADD   +++         +VLS   +                 GKF   + +   I 
Sbjct: 233 ILNADD---EKIYSLRDKTKAQVLSFSLESNDAEFGIQDLDLSSGKGKFTFKINRDIKIK 289

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +       +E  +F+      G   V N+LVA  + + + ID+  +   L+    V  RF
Sbjct: 290 D-----FILEKSEFNIELGSVGYSSVMNSLVAIIIGLCLKIDTETIKRALKNFKGVERRF 344

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           E +       +I  D+     +++  ++ ++ +    + +++   G R
Sbjct: 345 ELIFDEE--FKILDDHFANEKNIDATMETLKEMDYKNLNILYAIRGKR 390


>gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 460

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 178/376 (47%), Gaps = 42/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW++ +I  V+ DSR + +G +F+ + G  +DGH ++  A A GA A + +S     D  
Sbjct: 20  QWKDVEITSVAFDSRQLDSGALFIPLQG-AQDGHQYVESAFANGAVATLWAS-----DHD 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            T   + PILVVD+  + L   +     K    ++AVTG++GK++       I       
Sbjct: 74  VTTTEDQPILVVDDPLESLQQLSKYYLHKINPIVVAVTGSNGKTTTKDMTASIL------ 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           S Q+  T T ++F  +N +  P        ++ L+ +  T V V     G+D+  +LD +
Sbjct: 128 STQLNVTKTHANF--NNEIGVP--------VTLLNMESSTEVVV--VEMGMDRPGQLDFL 175

Query: 203 -KLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            KL++  F   T +G  HI++  T+    +AKM +   L  KE    I+  D     + +
Sbjct: 176 SKLVSPDFAVITMIGEAHIEFFGTRDKIADAKMEIVHGL--KEDGTFIFNGD--EPLLQE 231

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNA 315
           RA N   R ++ G Q   +         N+ + +I     E  D +F  P+ GE+ V NA
Sbjct: 232 RAANVEQRKVTFGRQ---LTDDFYATSVNQHETSIDFKVNEWPDEEFTIPMVGEYNVNNA 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L A  +   + I  A + + L+ + +   R E+V   ++G RI  D Y     + + +LK
Sbjct: 289 LAAIAVGKQLHITPAHIKKALKNVELTENRAEWVN-GAQGERILSDVYNSNPTAAKQVLK 347

Query: 375 NIRTI-TSGRIIVVFG 389
            I  + T+G+ I V G
Sbjct: 348 TIEELPTTGKRIAVLG 363


>gi|242308785|ref|ZP_04807940.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pullorum MIT 98-5489]
 gi|239524678|gb|EEQ64544.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pullorum MIT 98-5489]
          Length = 230

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 23/249 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH + Q+R++G++      TN+  DH+DYH+T + Y   K   F    PK+   +I
Sbjct: 1   MEVSSHAIVQNRIEGLEFALRILTNITSDHLDYHKTLENYIATKNSFFA--TPKDEK-LI 57

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFP 305
             D+  ++  ++     G    +        H+K   A   K  +T  +  GK+   L  
Sbjct: 58  NKDEKNAQYSLQNTMTYGIESNAT------FHIK---AYSLKGGITAQIAYGKEEAMLNA 108

Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            L G+  +YNAL A G  + I   S L  + + LE    V GR + V        I VD+
Sbjct: 109 YLFGKHNLYNALAAIG-AVKILTKSPLQMIADKLENFGGVLGRMQVVNEKPL---IIVDF 164

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + +E +    ++    +I+V+FG GGDRD+ KRP MG  A   A    +T DNPRS
Sbjct: 165 AHTQDGMEQVF---QSFLHQKIVVIFGAGGDRDKTKRPKMGYCASKYASKIYITSDNPRS 221

Query: 423 EDPEKIRAE 431
           E+P+ I  E
Sbjct: 222 ENPKMIMQE 230


>gi|257785019|ref|YP_003180236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
 gi|257473526|gb|ACV51645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
          Length = 517

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 123/470 (26%), Positives = 203/470 (43%), Gaps = 40/470 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATI 86
           ++ +V+SDSR +  G +FV        G  F P  +    +A  V+     SL +    +
Sbjct: 30  QLTDVASDSREVIPGSLFVC------KGASFSPAYLTSAVKAGAVAYLCQRSLAEELQAV 83

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143
             N   + VD+ R  ++  A+ + G HP+  L    +TGT GKS+ +  ++ I       
Sbjct: 84  APNVAAIHVDDVRFAMAYVAAGVAG-HPDKKLTTIGITGTKGKSTCSYMLRAILDGDEPY 142

Query: 144 SFQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           S + G    I  F     Q    TTP    L + L + +  G+ +V +E SS GL   R 
Sbjct: 143 S-KCGVIGGIEVFDGKDTQPAHNTTPEAPELWRHLKHAAEAGLPYVDMEISSQGLKYDRT 201

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
             + L    F N+G DHI    H T + YF +K+++F+        A++  +     +VM
Sbjct: 202 VDLNLSVAVFLNIGTDHISPVEHPTFEDYFESKLKIFD----LARVAVVNKNTMMFDQVM 257

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNA 315
           +RA     +VL+         +       ++  VT +V    +      P+ G F V NA
Sbjct: 258 ERAQRCE-KVLTFSTTDSDATVWADEITPHQGMVTFTVHTPTWTSSAALPMSGLFNVENA 316

Query: 316 LVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           L A  +   +GI   D+ L L +++    VPGR E + +        VDYAH   S + +
Sbjct: 317 LAAITVADYLGIREKDAVLPLMNVK----VPGRMELLSSPDNKVTGLVDYAHNKLSYQKL 372

Query: 373 LKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
             +      G    VV G  G +   +R  + + A   AD+ I T ++   EDP  I A+
Sbjct: 373 FSSTAKEFPGYGRYVVMGAVGGKAYNRRQELPEEAAKWADLMIYTTEDCNMEDPAVICAQ 432

Query: 432 IIHGIP-GFIEK--GNRIEAIRTAIEML---NKQDVLVVAGKGHETVHIV 475
           +    P G   K   +R +AI  A+       +  ++ +  KG E  +I+
Sbjct: 433 MAEATPEGAAHKIILDRYDAIYEAVSAAYDDPRPSLVYLLAKGDEPFNII 482


>gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
 gi|158447563|gb|EDP24558.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
          Length = 516

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 122/500 (24%), Positives = 213/500 (42%), Gaps = 77/500 (15%)

Query: 14  LINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           L+  L I  ++     E++I ++  +S+++    IFVAI G K DGH++I  A  QG  A
Sbjct: 11  LLEDLEILEIKGNLDIEKEIQKIEYNSKNVSENDIFVAIRGYKTDGHIYIKSAKKQGCYA 70

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
            +V      +DF   +  +   + V N+R  LS  +   YGK  E+  I+ +T T+GK++
Sbjct: 71  CIV------EDF---VDLDVAQIKVKNSRAALSKVSHNYYGKPSEDLDIIGITATNGKTT 121

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  +++I + +G     IG     I  F   + LTTP  + L K LS    +    V +
Sbjct: 122 TSFMLKKIYEEAGSKVGIIGTVYVKIDDFMIPSYLTTPESLDLQKYLSIFRERKADKVIM 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R   +     SF+NL ++H++ H + +AY   K +L  E   +   A++ 
Sbjct: 182 EVSSAALELDRAKDVDYNIVSFSNLSKEHMEQHGSYEAYKREKSKLITE-AKEHQIAVLN 240

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306
            D+   KE+   A     +V S        +        + + + +S     FDF+    
Sbjct: 241 FDNPEIKEL---ASKTKAKVFSFSLDDSLENF-------SMKNLDLSTGRGKFDFIINRD 290

Query: 307 ---------PGEFQ----------VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                     GEF           V N++VA  + +  GID   +   L     V  RFE
Sbjct: 291 IETKSGILKKGEFHVELNTAGFSSVMNSMVAISISLLDGIDIVTIQRALRIFRGVERRFE 350

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR------DQGKRPI 401
            +    +  +I  D+     ++++ L+ +  +    I  ++   G+R      +   + I
Sbjct: 351 IIF--EKDFKIIDDHFANEVNIDVTLETLCKMKYNDIKFLYAIRGNRGVELNEENALKII 408

Query: 402 MGKIALDLADI------AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--------- 446
                L L++I        VT  +  S++   I  +I+        K N I         
Sbjct: 409 EWNNKLKLSEIYATLSRDTVTWKDEVSDEERDIFLKIM--------KENNIKVHLFDTLK 460

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           EA+ T I++  K DV++ AG
Sbjct: 461 EAVETVIDIAQKDDVVMFAG 480


>gi|309810142|ref|ZP_07703988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312870943|ref|ZP_07731048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872249|ref|ZP_07732322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|325911604|ref|ZP_08174012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325912949|ref|ZP_08175323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
 gi|308169641|gb|EFO71688.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311092333|gb|EFQ50704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093633|gb|EFQ51972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|325476590|gb|EGC79748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325477763|gb|EGC80901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
          Length = 519

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 33  KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               L+V N  K +SL ++  Y + P++   ++A TGT GK++ A F++ I     L   
Sbjct: 84  GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137

Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             G T+  SS              + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238
           ++R+ G+    G F N+  DHI  + H   + Y + K++L               F+E+ 
Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257

Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
              +    P  IY  A + Y    +KR  +   R  SV     + KF    +  A  N  
Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              I VEG   ++   + G+F   NA   ++ AGL    G++     + ++ +  +PGR 
Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T +  G + VDYAH   S+  ++  + +   S +IIVV G  GD+   +R    + 
Sbjct: 364 ETL-TTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
               A+   +T D+P  ED + I  EI  GI       + + +R +AI  AI+     DV
Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDDDV 482

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++ GKG +    +   +     D  + +E++
Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514


>gi|221194981|ref|ZP_03568037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
 gi|221184884|gb|EEE17275.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
          Length = 519

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 124/500 (24%), Positives = 209/500 (41%), Gaps = 68/500 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV------SSAYSLQDFSATI 86
           +  DSR I+ G +FV        G  F P+ +    EA  V      S A  L+  + T+
Sbjct: 35  IDHDSRIIEPGHVFVC------KGAAFKPEFLKSALEAGAVAYLCAESHAAELEAIAPTV 88

Query: 87  RSNTPILVV--DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC---- 137
               P L+   +N R+ ++  ++ + G HP++   ++ +TGT GKS+ A  ++ I     
Sbjct: 89  ----PALIATDENLRRAMAESSAYVTG-HPDHGLTMIGITGTKGKSTTACMLRAILDGDE 143

Query: 138 ---QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
              + + + S ++     I     DN  TTP    L + L+     G+T++++E SS  L
Sbjct: 144 PYEKTAIMGSIEV--FDGIEHGKPDN--TTPEAPELWRHLANAQKCGLTYMAMEVSSQAL 199

Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              R  G+ L    F N+GRDHI    H T + YF +KM++F+        A+I  +  +
Sbjct: 200 KYDRTYGLHLDIAVFLNIGRDHISPVEHSTFEDYFVSKMKIFD----MAKTAVINRNTEH 255

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------- 303
            ++VM     A  R +         H+    A + K  +       ++  +         
Sbjct: 256 YEDVM-----AHVRAVHERNPECCQHVYTFSATNPKADIWADDISSEYGLVSFRAHTPTW 310

Query: 304 -----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P+PG F V NAL A  +   +G     +   L   H V GR E + T  R    
Sbjct: 311 TGHLSIPMPGLFNVDNALAAITVANLLGFSGEKLQYPLLNTH-VSGRMELIPTKDRKVTA 369

Query: 359 YVDYAHTSNSLEMILKNIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VDYAH   + + +  +        GR +V+   GG + Q +R  + +     AD  I T
Sbjct: 370 LVDYAHNRLAYQKLFSSSSQEFPNYGRYVVLGAVGG-KAQERRRDLPEEGSKWADHLIYT 428

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEML---NKQDVLVVAGKGHE 470
            ++P  +DP +I AE+    P         +R EAIR A+ +     +  ++ +  KG E
Sbjct: 429 TEDPAFDDPAEICAEMAAATPEDASYEIILDREEAIRQAVRLAYTDARPSIVYLLAKGDE 488

Query: 471 TVHIVTNGEKKMSVDCDIIR 490
               +         D  + +
Sbjct: 489 DFQSICGKRVPWKTDAAVFK 508


>gi|259501351|ref|ZP_05744253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
 gi|259167204|gb|EEW51699.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
          Length = 505

 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 19  KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 69

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               L+V N  K +SL ++  Y + P++   ++A TGT GK++ A F++ I     L   
Sbjct: 70  GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 123

Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             G T+  SS              + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 124 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238
           ++R+ G+    G F N+  DHI  + H   + Y + K++L               F+E+ 
Sbjct: 184 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 243

Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
              +    P  IY  A + Y    +KR  +   R  SV     + KF    +  A  N  
Sbjct: 244 AAATTTTNPDSIYLFARNDYDNPDLKRPID--FRFASVETDMCETKFKLYSETDAARN-- 299

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              I VEG   ++   + G+F   NA   ++ AGL    G++     + ++ +  +PGR 
Sbjct: 300 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 349

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T +  G + VDYAH   S+  ++  + +   S +IIVV G  GD+   +R    + 
Sbjct: 350 ETL-TTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 408

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
               A+   +T D+P  ED + I  EI  GI       + + +R +AI  AI+     DV
Sbjct: 409 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDV 468

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++ GKG +    +   +     D  + +E++
Sbjct: 469 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 500


>gi|315653102|ref|ZP_07906027.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
 gi|315489467|gb|EFU79104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
          Length = 519

 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 33  KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               L+V N  K +SL ++  Y + P++   ++A TGT GK++ A F++ I     L   
Sbjct: 84  GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137

Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             G T+  SS              + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238
           ++R+ G+    G F N+  DHI  + H   + Y + K++L               F+E+ 
Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257

Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
              +    P  IY  A + Y    +KR  +   R  SV     + KF    +  A  N  
Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              I VEG   ++   + G+F   NA   ++ AGL    G++     + ++ +  +PGR 
Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T +  G + VDYAH   S+  ++  + +   S +IIVV G  GD+   +R    + 
Sbjct: 364 ETL-TTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
               A+   +T D+P  ED + I  EI  GI       + + +R +AI  AI+     DV
Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDV 482

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++ GKG +    +   +     D  + +E++
Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514


>gi|309803501|ref|ZP_07697594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164385|gb|EFO66639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 519

 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 33  KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               L+V N  K +SL ++  Y + P++   ++A TGT GK++ A F++ I     L   
Sbjct: 84  GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137

Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             G T+  SS              + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238
           ++R+ G+    G F N+  DHI  + H   + Y + K++L               F+E+ 
Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257

Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
              +    P  IY  A + Y    +KR  +   R  SV     + KF    +  A  N  
Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              I VEG   ++   + G+F   NA   ++ AGL    G++     + ++ +  +PGR 
Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T +  G + VDYAH   S+  ++  + +   S +IIVV G  GD+   +R    + 
Sbjct: 364 ETL-TTAHHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
               A+   +T D+P  ED + I  EI  GI       + + +R +AI  AI+     DV
Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDDDV 482

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++ GKG +    +   +     D  + +E++
Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514


>gi|310658896|ref|YP_003936617.1| UDP-n-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii
           DSM 519]
 gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii]
          Length = 516

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 205/471 (43%), Gaps = 47/471 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  ++  S  ++ G +F  I G K DGH ++  A  +GA   VV S   +QD     
Sbjct: 23  DHNIQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAKNKGAVGAVVES---IQD----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143
             + P  +V + R  L+L A   Y  HP     ++ +T T+GK++ A  +  I + +   
Sbjct: 75  NIDIPQYLVSDARHSLALCACNFYN-HPSKFMKMIGITATNGKTTTAFMIDNILENN--- 130

Query: 144 SFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +F+ G   T+     D +    LTTP  + L   +  +   G+THV++E SS  ++  R+
Sbjct: 131 NFKTGLVGTVLIKVGDEQIASDLTTPESLDLQNYIYRMKENGLTHVTMEVSSSAIELDRI 190

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI      F N+ R+HID H+T + Y   K  L      K S AI+  D   +  ++ +
Sbjct: 191 AGIDYDIVIFNNISREHIDLHETFENYVALKSSLITN-AKKGSWAILNMDCEEAASLVNK 249

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-----------GKDFDFLFPLPG 308
              A      V      I  K +     + + T+ +             + F+    +PG
Sbjct: 250 TE-ANVLTYGVNNDNAMILCKNLDLSSGRGKFTVEISKLFSINGYLYMNQSFEISLSVPG 308

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              VYNA+ A    +   +   ++ E       V  RFEF+  N    +I  D+   + +
Sbjct: 309 YHSVYNAMAAIAAALICKVPIDVIQESFLNFKGVERRFEFIYENDF--KIIDDHFANAGN 366

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDR------DQGKRPIMGKIALDLADIA------IVT 416
           +++ ++ +  +   ++ +V+   G R      +  +  +     L+L++I         T
Sbjct: 367 IDVTMETLNFMKYNKLHLVYAIRGSRGPIVNNENAQAIVTWAKKLNLSEIIATKSADYTT 426

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-EAIRTAIEMLNKQDVLVVAG 466
           + +  +++ E + +EII+     +E    + +AI  A+    + DV+++AG
Sbjct: 427 EKDIVTDEEEAVFSEIINSSKLKLELYEHLSDAIGEALNRAKEDDVILLAG 477


>gi|302190928|ref|ZP_07267182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus iners AB-1]
 gi|309805417|ref|ZP_07699464.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808241|ref|ZP_07702150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|312873648|ref|ZP_07733695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|312875730|ref|ZP_07735725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|329921022|ref|ZP_08277550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
 gi|308165235|gb|EFO67471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168529|gb|EFO70638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|311088722|gb|EFQ47171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311090901|gb|EFQ49298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|328935298|gb|EGG31778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
          Length = 519

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 33  KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               L+V N  K +SL ++  Y + P++   ++A TGT GK++ A F++ I     L   
Sbjct: 84  GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137

Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             G T+  SS              + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238
           ++R+ G+    G F N+  DHI  + H   + Y + K++L               F+E+ 
Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257

Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
              +    P  IY  A + Y    +KR  +   R  SV     + KF    +  A  N  
Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              I VEG   ++   + G+F   NA   ++ AGL    G++     + ++ +  +PGR 
Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T +  G + VDYAH   S+  ++  + +   S +IIVV G  GD+   +R    + 
Sbjct: 364 ETL-TTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
               A+   +T D+P  ED + I  EI  GI       + + +R +AI  AI+     DV
Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDV 482

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++ GKG +    +   +     D  + +E++
Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514


>gi|309806638|ref|ZP_07700634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166943|gb|EFO69126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 519

 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR I+   +F      K     ++  A   GA   V    Y           
Sbjct: 33  KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               L+V N  K +SL ++  Y + P++   ++A TGT GK++ A F++ I     L   
Sbjct: 84  GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137

Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             G T+  SS              + LTTP  + L + +      G+TH+ +E SS    
Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238
           ++R+ G+    G F N+  DHI  + H   + Y + K++L               F+E+ 
Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257

Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
              +    P  IY  A + Y    +KR  +   R  SV     + KF    +  A  N  
Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              I VEG   ++   + G+F   NA   ++ AGL    G++     + ++ +  +PGR 
Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T +  G + VDYAH   S+  ++  + +   S +IIVV G  GD+   +R    + 
Sbjct: 364 ETL-TTAHHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
               A+   +T D+P  ED + I  EI  GI       + + +R +AI  AI+     DV
Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDV 482

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++ GKG +    +   +     D  + +E++
Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514


>gi|227497876|ref|ZP_03928059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832708|gb|EEH65091.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 522

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 216/501 (43%), Gaps = 54/501 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P  W    ++ V  D+R I  G + V     KED   ++  A  QG  A V    YS  
Sbjct: 49  LPELW----LSSVVYDTRMITPGALLVVKGRFKED---YLLPAQEQGMVAYVAEREYS-- 99

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                  +  P L+V +  + +SL A+ LYG HPE  L + G +G     +    +   +
Sbjct: 100 -----SLTTCPGLIVTDALEAMSLLAAELYG-HPERELTIVGITGTKGKTTTAHLV--HA 151

Query: 141 GLSSFQIGPTSTISS--FAQDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            LS    G ++  SS     D R      LTTP      + +      G+TH+ +E SS 
Sbjct: 152 VLSQVTGGRSAMFSSNHLCLDGRTFTPAVLTTPESADSLRMMRQALDAGMTHLVMEVSSQ 211

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                R+ G+    G F N+G+DHI    H T + YF  K     EL+      ++ AD 
Sbjct: 212 AYKLKRVFGLTFDVGVFLNIGQDHISLVEHPTFEDYFFCK----RELIRHSRQLVLNADT 267

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHL----KKVCAIHNKQQVTISVEGKDFDFLFPL 306
            Y   + + A  AG R L+V  +   + L    K     ++ Q+V  S    D      L
Sbjct: 268 DYHGLLTEEARLAGARTLTVSREDGDLILTQEGKGFTLRYHGQEVAGSA---DQPMRLRL 324

Query: 307 PGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G F   NA  A  + +++G  + +  L  LE++  V GR E +  ++ G   YVD+AH 
Sbjct: 325 AGAFNQDNAAAAVAVALSLGSPAGSPQLRALEQVQ-VSGRMERL-VSADGVVGYVDFAHN 382

Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S   +L  +  +    + RII+V G  G +   +R  +   A    D  I T+D+   
Sbjct: 383 HLSTSSLLDEVERVYGRENPRIILVSGSTGGKAVNRRQGIVTAANGRVDSFIFTEDDQDR 442

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAI----EMLNKQDVLVVAGKGHETVH 473
           E+  +I A  + G     E   +I     +AI  A+    E   +++V++V GKG E  +
Sbjct: 443 ENATQI-ARQMRGYVTDTEASTQIVMPRAKAIEAAVGQAREYPGRRNVILVIGKGDEVYN 501

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           +V   ++    D  ++R +LG
Sbjct: 502 VVNGVKQPYEGDAVVLRRLLG 522


>gi|325568267|ref|ZP_08144634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158036|gb|EGC70189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 506

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 122/515 (23%), Positives = 211/515 (40%), Gaps = 97/515 (18%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+ + K+     + +   P +  +     +S DSR   A  +F     + ++ +L    
Sbjct: 16  LQENLLKEIITPTDWVYTVPQEMTDIAFTSLSYDSRTADAATLFFCKGASFKESYL--AA 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG +  +  + Y   +F+      T  ++V + R+ +++ A   YG   E +  + +
Sbjct: 74  AIDQGIQCYISETPYD--NFA------TYGIIVTDIRETMAVIAQAFYGNPQEQLVTIGI 125

Query: 121 TGTSGKSSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK+S A F + I   S    ++ F     S       +  LTTP  + L K ++  
Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ GI    G+F N+  DHI                    
Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIG------------------- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVE 296
            P E P   Y D  Y K  + R      + + +  Q    H L++ C +H  Q   I+  
Sbjct: 227 -PVEHPT--YDDYLYCKRELIR----NSKQMILNRQSDHYHLLRETCEVH--QVPYITYG 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL----------------------- 333
             D D++     + + + AL AA   + +  +  L +                       
Sbjct: 278 RSDADYVVQEGMDLKSF-ALTAASDVLQVSGEYQLGILGSFNHENAAAAILAACLAGASR 336

Query: 334 EHLEKLH---VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFG 389
           E  +K+    ++PGR   V     G  + VDYAH   S + + +  R +   GR++ V G
Sbjct: 337 EDAQKVLPTVIIPGRM-IVLEKENGAVMIVDYAHNYLSFQSLSELARQLRPDGRLLFVTG 395

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNP--------------RSEDPEKIRAEIIHG 435
             G + Q +R  MG+   + AD   +T D+P                 +PE     IIH 
Sbjct: 396 SAGGKAQSRRADMGRALGEYADKVYLTSDDPDFEEAAAIAKEIADAITNPE---VAIIHE 452

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +       +R +A++ AI   + +D++++AGKG E
Sbjct: 453 M-------DRAQAVKLAIAEADGRDIVIIAGKGAE 480


>gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 535

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 173/379 (45%), Gaps = 45/379 (11%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL DL+   K      NQL I   +  +  I +++  S+ + A  +FV I G++ DGH 
Sbjct: 1   MKLTDLLKSVKIDSSCHNQLKI---ELDKIDIKKIAYHSKEVGADTLFVCIKGHQTDGHN 57

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--- 115
           +   A +QGA  I+V      +DF   I  +   L V ++R+ L++ +S  +  HP    
Sbjct: 58  YAKHAASQGATVIIV------EDFIEDI--HVIQLKVSDSREALAILSSNFFD-HPSKSM 108

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174
           NI  VT T+GK+++   +++I + S L S  IG     I    + +RLTTP    L +  
Sbjct: 109 NIFGVTATNGKTTITYMIEEIFKASQLKSGLIGTILVKIDKEIEMSRLTTPESYDLQQHF 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +  + +THVS+E SS  L+  R+        +F N+  +HI  H++  AYF+AK  L 
Sbjct: 169 ARMRDREITHVSMEVSSSALELKRVYNTDFDVVAFMNISPEHIKLHESFDAYFDAKASLI 228

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVT 292
                K S AI+  D+     + K       +V++ G + K   I +  +         T
Sbjct: 229 RN-ASKASTAILNLDEPLLIPLEKETE---AQVITFGIENKSGTITVSDIRFSSGIPSFT 284

Query: 293 I------------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +            ++E   FD    + G   +YNAL A    +  G+ + L +E +++  
Sbjct: 285 VNIRKPFNTLSGKTIEITSFDLEMSVLGYHSIYNALTA----LVTGLVNDLPIEDIQR-- 338

Query: 341 VVPGRFEFVGTNSRGGRIY 359
              G   F G   R   +Y
Sbjct: 339 ---GIKNFQGVERRFQVLY 354


>gi|308811498|ref|XP_003083057.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
 gi|116054935|emb|CAL57012.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
          Length = 657

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 116/535 (21%), Positives = 224/535 (41%), Gaps = 99/535 (18%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ +++D   + +G +FV  VG  E G     +A+A G  AIV S             +
Sbjct: 82  EISGIANDINALLSGDLFVCPVGG-EAGASLAREAVAAGPVAIVASERVEGV-------A 133

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P  VV N  + L+  A   YG     +  +A+TG  GK++ +  V+ + + + +    
Sbjct: 134 DVPCAVVANVDEALADIARVFYGDPSTALTAIALTGAVGKTTTSYLVKSVFEAADIKMGL 193

Query: 147 IGPTSTIS--SFAQDN-RLTT------------------PSPIYLA-------------K 172
           +G         F +D+ +LTT                   +P +LA              
Sbjct: 194 VGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRDRTSTAPGWLAPYRGKYEFEELGAD 253

Query: 173 ALSY------LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
           AL +      ++  G     +E S+  + +    G+     + T+      +Y+     Y
Sbjct: 254 ALQFQQLTAGIADNGANAAVMEVSAEQVRRKATRGMNFDIVALTSFEGARKNYNGADSEY 313

Query: 227 FNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKK 281
            +    +F+ L   E+   +I  D+  +   + R + +G  V++    +G     ++  +
Sbjct: 314 SSFVADVFKVLENAETQRGVINIDEEDAD--LCREYASGVPVVTYSTQIGNTAADVYPAR 371

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           V     +  +++S    + + +  L GE  +     A  + +A  I   ++   LE   V
Sbjct: 372 VDFSLFETAISLSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAEISLDVIAAGLEACEV 431

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKR 399
           +PGR E V    +   + VD A+T   +E +++++R     R+I V GC GD   ++G+R
Sbjct: 432 IPGRMELVDM-GQDFSVLVDNANTPEGIERVIQSVRAANCRRVITVIGCEGDMGDERGER 490

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE------------ 447
            ++GK+A D++D+  +T+D+P++EDP KI  +I  G    I + ++I+            
Sbjct: 491 AVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFRNEIYENDKIKDEALFPFLKDMY 550

Query: 448 ---------------------------AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                                      AIR AI M  + DV+++ G+G +   +V
Sbjct: 551 EVHENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAERDDVVLILGRGSKDYFVV 605


>gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
 gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
          Length = 480

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 169/407 (41%), Gaps = 62/407 (15%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +++ DSR ++ G+ FVAI G K DGH FI +AI +GA  I     ++ ++  +  RS  P
Sbjct: 14  DITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVI-----FTEKEIKS--RSGIP 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           I+ V ++R  L   A+  Y  +P     ++ VTGT+GK++    +  +    G +S  IG
Sbjct: 67  IVRVKDSRSILGKLAAEFYN-YPSRKLKLIGVTGTNGKTTTTHLIYHLLNYKGKNSGLIG 125

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                         LTTP P+ L K L  +    + +  +E SSHG+   R+ G +    
Sbjct: 126 TVKVDTGKRTIPGNLTTPEPVTLQKYLDEMVKHNLNYACMEVSSHGIKLKRITGSQFAIK 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH D H     Y   K    E+  P  +  ++  DD Y       A N     
Sbjct: 186 VGTNITVDHFDLHSDFSDYVQVKKSFLEDKNP-HTLVLLNNDDHYLSSFGNIAKN----- 239

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPL------------------ 306
             +GY            I     +T   I+  G   DF++ L                  
Sbjct: 240 -QIGY-----------GITTNTDITAENINYSGITTDFVYSLNKSIKTSQGNKIGPMKVP 287

Query: 307 -----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                PGE  +YNALVA  + +  G+    + +   +   +  RF+ +   ++   I  D
Sbjct: 288 INLKIPGEHNIYNALVAITIGLYYGLTPEKIQDFFGQFRGIWRRFQVI--YNKDFAIIDD 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGK 404
            AH   S   + K +  +    +++V    G+R    ++G    +GK
Sbjct: 346 CAHNPGSYGAVFKTVSQLKYKNLLIVNAIRGNRGAQINKGNAETIGK 392


>gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 458

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 178/374 (47%), Gaps = 49/374 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R+  EVS+D+R ++   +FVA+ G K DGH F+P A+A+GA  +VV   +S+       
Sbjct: 21  DREFTEVSTDTRTLKPYALFVALHGEKLDGHEFVPDAVAKGAAGVVVERPFSI------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N   +VV +T + L   A  LY +  E   ++ +TG++GK++    V+ + ++     
Sbjct: 74  --NVTQIVVKDTFRALQELA--LYNRQKEGLKVIGITGSNGKTTTKDLVKAVLRQ----- 124

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIK 203
            +    +T  +F  +N L  P        L+ L+    T V  VE    GL +  +D + 
Sbjct: 125 -KYNVCATEKNF--NNELGVP--------LTLLNFDENTEVGIVEMGMRGLGE--IDALC 171

Query: 204 LIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            +A    G  TN+G  H++  ++Q+    AK  L +  LP +  AII  +  Y KE++  
Sbjct: 172 QVARPDIGIITNIGEAHLELLKSQENIARAKSELIKN-LPGDGVAIINGESPYIKEIVA- 229

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             N   +    G++   +++KK     +  +  I+    + +F  PL G     NAL A 
Sbjct: 230 --NIPVKKYFFGHRAGDLYIKKFSQEDDGLRF-ITAGILEEEFFLPLFGVHNAVNALAAI 286

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTS-NSLEMILKNI 376
              + +G+   L+ + L ++ +   R E  F+G+     +I  DY + S  S+E  LK +
Sbjct: 287 LTALTLGVRVPLIKKGLSEVELTGMRLEIQFIGSM----KIIKDYYNASPTSMEAALKVL 342

Query: 377 R-TITSGRIIVVFG 389
             T   GR I V G
Sbjct: 343 AGTGQKGRKIAVLG 356


>gi|328947387|ref|YP_004364724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
 gi|328447711|gb|AEB13427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
          Length = 568

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 92/177 (51%), Gaps = 16/177 (9%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHL----EKLHVVPGRFEFVGTNSRGGRIYVD 361
           +PG F  YN   A    +A+   + + +E L    +KL  V GR   +    +   + VD
Sbjct: 367 VPGAFNAYNITAA---ILAVHGTTGISIEKLALCAQKLTSVKGRMTVI-DEGQPFEVIVD 422

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT +S E I   ++    G++I VFG GG+RD  KRP+ G+IA    DI I+TD++PR
Sbjct: 423 YAHTPSSFETIFPPLKNRAMGKMICVFGSGGERDTTKRPLQGEIAARFCDIVILTDEDPR 482

Query: 422 SEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470
            ED   I  +I  G     +K N        R +AIR A  M  + D++++ GK HE
Sbjct: 483 KEDRMTIIEQIALGARKEGKKDNVDLFLVPDRPQAIRKAFSMAKENDIVLLLGKSHE 539



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 13/215 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS------ATIRSN 89
           DSR ++  ++F A+ G    G+ FI QA++ GA A+V     + ++ S      A+    
Sbjct: 43  DSRDVKENYLFFALPGTHTTGNKFIAQAVSCGAGAVVFQDEITQEEHSQIKEALASSSKK 102

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V ++R  +S  +S  Y      ++   VTGT GKSS  SF+ Q+ + +G+ +  I
Sbjct: 103 VVFVKVPSSRFAMSPVSSCFYDNPSSKLVVYGVTGTEGKSSTVSFIWQLLRLNGIKAGFI 162

Query: 148 GPTS-TISSFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGI 202
                ++   A DN    TTP    + + L  +   G TH  VE+SSHGL +  +RL  +
Sbjct: 163 STVQYSLGGDAIDNPQHQTTPEAPVVQRELYEMVCNGCTHAVVESSSHGLSKKLNRLGNV 222

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 F N+  +H+++H T + Y + K  LF  L
Sbjct: 223 LFDCAVFMNVTLEHLEFHGTYEQYKSDKANLFRAL 257


>gi|169334709|ref|ZP_02861902.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257447|gb|EDS71413.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM
           17244]
          Length = 408

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 44/382 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQ-----RSGLSSFQIGPTSTISSF----AQDNRLTTPSP 167
           ++ VTGT GKS+ + F++ I       +  +SS   G  STI ++      ++ LTTP  
Sbjct: 12  LIGVTGTKGKSTTSFFIKNILDLYLKSKGKMSS---GIISTIDTYDGSELSESLLTTPES 68

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           +   K L+   +  + +   E SS      R+ G     G F N+G DHI    H+    
Sbjct: 69  LEFYKLLNNAVNNELEYFVCEISSIAYKYSRVYGANFNVGVFLNIGYDHISDVEHKDFDD 128

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYS----KEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           YF++K++L E      S  I+   D        EV+           S+  +  +    K
Sbjct: 129 YFSSKIKLLE-----NSEYIVINKDLLRYDEINEVLNNKEKDKIFTFSIDDKADY----K 179

Query: 282 VCAIHNKQQVTI-----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
              I  K + T      + E K+++ L  + G + V NA+ A  +C  + ID   + + +
Sbjct: 180 AMNIKRKNRFTSFDLVHNGELKNYNLL--MSGLYNVENAIAAIIVCEILCIDYKYIFKGI 237

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRD 395
                V GR E   T      + VDYAH   SL+   + ++    G+  I + G  G + 
Sbjct: 238 LG-SAVKGRGEIYKTKDGKKTLIVDYAHNELSLKRYFEFVKDEFKGKKHICIIGAPGGKA 296

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIR 450
             +R  +G +     D  I+T D+P  E  + I +EI+  IP +     IE  NR EAI+
Sbjct: 297 LNRRKEIGTLCYKNCDEIILTSDDPFYESFDNICSEIMSFIPKYKKIRVIE--NRTEAIK 354

Query: 451 TAIEML-NKQDVLVVAGKGHET 471
            A+    N++ ++ + GKG ET
Sbjct: 355 EAVNSYKNEETIISILGKGSET 376


>gi|149923017|ref|ZP_01911435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
 gi|149816138|gb|EDM75648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
          Length = 437

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 11/141 (7%)

Query: 344 GRFEFVG-------TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           GRFE +          +R  R+ +DYAHT  +LE++L+  R +  GR  VVFG GG  D 
Sbjct: 274 GRFELLALPELDAEARARLPRVVIDYAHTPEALELVLRCARELHPGRCFVVFGAGGSADP 333

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAI 453
            KR  +G +A  +AD   VT DNPR EDP  I  ++  GIP     + + +R +AI  AI
Sbjct: 334 SKRAPLG-LAASVADRIFVTTDNPRDEDPSDIARQVCAGIPAGHPHVVELDRGQAIALAI 392

Query: 454 EMLNKQDVLVVAGKGHETVHI 474
                 D+++VAGKGHE   I
Sbjct: 393 AEAQPGDLVIVAGKGHERDQI 413



 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G    ++EA+S  L            G FTNLG DH+  H + + Y  +K +LF  L P 
Sbjct: 92  GPRFAAIEATSTTLAIGFATAWPFRVGVFTNLGHDHLRAHGSYEHYLASKAQLFLSLPPG 151

Query: 241 ESPAIIYADD 250
              A++ ADD
Sbjct: 152 GF-AVLNADD 160


>gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 455

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 164/394 (41%), Gaps = 51/394 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R R++ ++ +DSR  + G +F AI G   DGH FIPQ  AQGA  ++   A +       
Sbjct: 24  RSREVADIVTDSRRAKEGSLFAAICGEHVDGHRFIPQVYAQGALCVLCEKAPA------- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +  P ++V++T K L   A     +    ++ +TG+ GK+S    +  +        +
Sbjct: 77  -EAQGPYILVESTLKALMAIAEFYRQQLDIKVVGITGSVGKTSTKEMIASVLS----EKY 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
           ++    T  +F  +N L  P  ++       L+ +    V     +H  + HRL  I + 
Sbjct: 132 RV--LKTPGNF--NNELGLPLTVF------QLTEEDEVAVLEMGINHFGEMHRLSKIARP 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS--KEVMKRAHN 262
                TN+G  H+++   +     AK  +F+ + P     +   DD  S  KEV      
Sbjct: 182 DVCVITNIGTCHLEFLGDRDGVLRAKSEIFDFIAPDGQIVLNGDDDKLSALKEVR----- 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---------KDFDFLFPLPGEFQVY 313
                   G   +F  ++  CAI         ++G         + F    P+PG   V 
Sbjct: 237 --------GITPQFFGIEHACAIRATDIENAGLKGVKCRIHDGTESFAVTIPIPGYHMVL 288

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  +  A+G+    +   +EKL  + GRF  +     GG   VD  + +N + M  
Sbjct: 289 NALAATAVGRALGMSLEEIRRGIEKLQALGGRFRIL---EAGGITVVDDCYNANPMSMKA 345

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              +     GR I V G  G+  + ++ + G++ 
Sbjct: 346 SLGVLADAPGRKIAVLGDMGELGENEQQLHGEVG 379


>gi|207108798|ref|ZP_03242960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 207

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 18/178 (10%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGRIYV 360
           PL G + +YN L  AG+ + + + + L LE     LE  + V GR E V +      + V
Sbjct: 32  PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSKPL---VVV 85

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AHT++ ++ + ++ +   + +I  +FG GGDRD+ KRP MG IA   A   I+T DNP
Sbjct: 86  DFAHTTDGMQQVFESFK---NQKITALFGAGGDRDKTKRPKMGAIASCYAHQIILTSDNP 142

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           RSE+ E I  +I+ GI       IEK +R +AI  A+E L   +VL++ GKG E   I
Sbjct: 143 RSENEEDIIKDILKGINDSSKVVIEK-DRKKAILNALENLKDDEVLLILGKGDENTQI 199


>gi|292558100|gb|ADE31101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus suis GZ1]
          Length = 398

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 172/398 (43%), Gaps = 66/398 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           W + + + +S DSR +    +F A  +   KE    F+ +AI  G +  V    Y +   
Sbjct: 30  WTDVQFDALSYDSRTVSPTTLFFAKGLAFKKE----FLEKAIEAGLDFYVSEIDYEV--- 82

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139
                   P ++V + ++ +SL A   +G HP+    +LA TGT GK++ A F   I ++
Sbjct: 83  ------GIPAIIVHDIKQAMSLIAMDFHG-HPQKQLKLLAFTGTKGKTTAAYFAFNILKQ 135

Query: 140 SGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           S   +      +T+   +F + + LTTP  + L   ++     G+TH+ +E SS      
Sbjct: 136 SKKPAMLSTMNTTLDGKTFFK-STLTTPESLDLFAMMAEAVKNGMTHLIMEVSSQAYLVK 194

Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           R+ G+    G F N+  DHI    H T + YF  K      LL   S A+I         
Sbjct: 195 RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMDNSRAVIV-------- 241

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-- 313
                 NAG     V  +             ++ Q++ S  G DF     L G + +   
Sbjct: 242 ------NAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSA-GFDFTATGKLAGHYDIQLI 294

Query: 314 ------NALVAAGLCIAIGIDSALVLEHLEKLHV------VPGRFEFVGTNSRGGRIYVD 361
                 NA+ A   C+ +G         LE +H       VPGR E V T   G +++VD
Sbjct: 295 GGFNQENAIAAGLACLRLGAS-------LEDIHTGIAQTNVPGRME-VLTQQNGAKVFVD 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
           YAH  +S++ ++  +    +G++ ++ G  G++ + +R
Sbjct: 347 YAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRR 384


>gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
 gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
          Length = 487

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 33/340 (9%)

Query: 13  ELINQLSIFPM-----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           E+   LS+ P      Q  +++I  V +DSR ++ G +F+A  G + D H F+P+A+AQG
Sbjct: 17  EICEVLSVRPPAGVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFVPKALAQG 76

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A   +V   Y L    A  R+  P+L+ V +T +     A+    + P  ++A+TG++GK
Sbjct: 77  AVCAIVQEDYRLP--PAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAITGSNGK 134

Query: 127 SSVASFVQQ-ICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++    V Q + QR            T+ +    +NR+  P  ++    L+      V  
Sbjct: 135 TTTKEMVAQVVAQR----------WKTLKTEGNLNNRIGVPQTLF---QLAPRHQAAVIE 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + V+    G      +  +   G  TN+G DH+++  + +    AK  L +  LP++   
Sbjct: 182 MGVD--QQGQTTRLCEIARPTIGVITNIGPDHLEFFGSMEGSAQAKAELLDH-LPQDGAV 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKDF 300
           ++ ADD Y   +  RA    CRV++ G   K         +  K      + +  + +  
Sbjct: 239 VLNADDEYFDYLAARAQ---CRVVAFGISPKAAIRAANIRVDEKGGTLFGLVVPGKSRQT 295

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +      G+  V NAL AA +   +G+    + E L K  
Sbjct: 296 EIRIRAQGQHNVSNALAAAAVGYVLGLSGTAIAEGLAKFR 335


>gi|303232214|ref|ZP_07318915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Atopobium vaginae PB189-T1-4]
 gi|302481692|gb|EFL44751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Atopobium vaginae PB189-T1-4]
          Length = 652

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 185/463 (39%), Gaps = 66/463 (14%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGLSSF 145
           LVV + R  +++ +   +G+ P+  L   G +G          + S ++  C   G++S 
Sbjct: 153 LVVTDIRHAMAVCSPIAWGR-PDKQLCCIGVTGTKGKSTTTYMLRSILEAHCAARGITST 211

Query: 146 Q-------IGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                   IG  ST   F  +    TTP    L + L   ++  + ++ +E SS  L   
Sbjct: 212 HGASPVGIIGSISTYDGFINEKSTNTTPEAPDLWRHLHNAAAAKLAYMVLEISSQALKYE 271

Query: 198 RLDGIKLIAGSFTNLGRDHI---------DYHQTQQAYFNAKMRLFEELLPKESPAI--- 245
           R+ G+ L A +F N+ RDHI         DY  ++   F+        L  K +  I   
Sbjct: 272 RVYGLHLYASAFLNISRDHISPVEHPTFEDYFASKLTIFSYAKHSVVNLNSKHAARIANT 331

Query: 246 ---------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---- 292
                       D   +      A     R  S   Q      +++ A+ N+   T    
Sbjct: 332 ACSCSDTHFCMVDVPKNDASADSAQADDARADSA--QADEFTREELKALLNQYPCTRATD 389

Query: 293 ---------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALV--LEHLEKLH 340
                    + V G       P+ G F   NALVA  L   +G+ D A+V  + H     
Sbjct: 390 VTCARGGFAMRVSGMAQPVYIPMHGSFNAQNALVALTLARLVGVGDDAIVKGIAHTR--- 446

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
            VPGR EF+ T        VDYAH   S +    +IR    S RI  VFGC G++   +R
Sbjct: 447 -VPGRMEFIPTTHPRIHGIVDYAHNRLSFQTFFASIRREFPSARIYAVFGCPGNKAFERR 505

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML 456
             + +IA   AD  I+T D+P SED   I  E+   +P    +  + NR +AI  A+   
Sbjct: 506 RDLPEIAGAYADEIILTKDDPGSEDTRTICEEMASHLPAHARYCIEPNRAQAIFDAVTDA 565

Query: 457 NK---QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           ++     V+ + GKGHE      +G      D  +  + +  +
Sbjct: 566 HRAQVDSVICMLGKGHENTQHEAHGYSSYPSDARVYADAIAAV 608


>gi|215427537|ref|ZP_03425456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T92]
          Length = 125

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/95 (52%), Positives = 62/95 (65%), Gaps = 6/95 (6%)

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------ 436
           R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G       
Sbjct: 3   RLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGD 62

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
              +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 63  AQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 97


>gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale M104/1]
          Length = 464

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 166/377 (44%), Gaps = 59/377 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G++F+ I G + DGH FIP    QGA AIV+S  + L D +       P ++V
Sbjct: 39  DSRQVKEGYLFIPIKGERVDGHRFIPTVFEQGA-AIVLSE-HELTDPAG------PYVLV 90

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++T   +   A+         ++ +TG+ GK+S    +  + ++      +     T  +
Sbjct: 91  ESTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTKEMISSVLEQ------KYSVHKTAGN 144

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-AGSFTNLGR 214
           F  +N +  P  I+  +      S  V  + +  S  G + HRL  +        TN+G 
Sbjct: 145 F--NNEIGLPLTIFGIR-----ESHQVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGY 196

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------------AYSKEVMKR 259
            H+++ + +     AK   FE ++P ++ A++ ADD                Y KE    
Sbjct: 197 CHLEFLRDRDGVLKAKTECFEHMMP-DAVAVLNADDDKLATVQTVNGKPAIYYGKESASD 255

Query: 260 AHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            H +     + ++G+ G   H              ++ EG +FD    +PGE  VYNA+ 
Sbjct: 256 VHKSVYTTNIENLGFDGMKAHF-------------VTPEG-EFDAHIHIPGEHNVYNAMA 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376
           AA + + +G+  A +   +EK   + GR  F+ T+   G   +D  + +N + M     +
Sbjct: 302 AAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTH---GMTVIDDCYNANPVSMKSSIEV 358

Query: 377 RTITSGRIIVVFGCGGD 393
            +   GR I V G  G+
Sbjct: 359 LSHAKGRTIAVLGDMGE 375


>gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
          Length = 237

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 17/216 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     +D H F+  A+  GA A++V    +++     
Sbjct: 22  KITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  FTNL +DH+DYH+T   Y + K  LF  L
Sbjct: 192 CNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARL 227


>gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 244

 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 17/216 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     +D H F+  A+  GA A++V    +++     
Sbjct: 29  KITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDVNIE----- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 84  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 139 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  FTNL +DH+DYH+T   Y + K  LF  L
Sbjct: 199 CNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARL 234


>gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale DSM 17629]
          Length = 464

 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 165/377 (43%), Gaps = 59/377 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G++F+ I G + DGH FIP    QGA AIV+S  + L+D +       P ++V
Sbjct: 39  DSRQVKEGYLFIPIKGERVDGHKFIPNVFEQGA-AIVLSE-HELKDPAG------PYVLV 90

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +T   +   A+         ++ +TG+ GK+S    +  + ++      +     T  +
Sbjct: 91  GSTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTKEMISSVLEQ------KYSVHKTAGN 144

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-AGSFTNLGR 214
           F  +N +  P  I+  +      S  V  + +  S  G + HRL  +        TN+G 
Sbjct: 145 F--NNEIGLPLTIFGIR-----ESHQVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGY 196

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------------AYSKEVMKR 259
            H+++   +     AK   FE ++P ++ A++ ADD                Y KE    
Sbjct: 197 CHLEFLGDRDGVLKAKTECFEHMMP-DAVAVLNADDDKLATVQTVNGKPAIYYGKESASD 255

Query: 260 AHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            H +     + ++G+ G   H              ++ EG +FD    +PGE  VYNA+ 
Sbjct: 256 VHKSVYTTNIENLGFDGMKAHF-------------VTPEG-EFDAQIHIPGEHNVYNAMA 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376
           AA + + +G+  A +   +EK   + GR  F+ T+   G   +D  + +N + M     +
Sbjct: 302 AAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTH---GMTVIDDCYNANPVSMKSSIEV 358

Query: 377 RTITSGRIIVVFGCGGD 393
            +   GR I V G  G+
Sbjct: 359 LSHAKGRTIAVLGDMGE 375


>gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
 gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
          Length = 464

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 165/377 (43%), Gaps = 59/377 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G++F+ I G + DGH FIP    QGA AIV+S  + L D +       P ++V
Sbjct: 39  DSRQVKEGYLFIPIKGERVDGHKFIPTVFEQGA-AIVLSE-HELTDPAG------PYVLV 90

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++T   +   A+         ++ +TG+ GK+S    +  + ++      +     T  +
Sbjct: 91  ESTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTKEMISSVLEQ------KYSVHKTAGN 144

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-AGSFTNLGR 214
           F  +N +  P  I+  +      S  V  + +  S  G + HRL  +        TN+G 
Sbjct: 145 F--NNEIGLPLTIFGIR-----ESHQVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGY 196

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------------AYSKEVMKR 259
            H+++   +     AK   FE ++P ++ A++ ADD                Y KE    
Sbjct: 197 CHLEFLGDRDGVLKAKTECFEHMMP-DAVAVLNADDDKLATVQTVNGKPAIYYGKESASG 255

Query: 260 AHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            H +     + ++G+ G   H              ++ EG +FD    +PGE  VYNA+ 
Sbjct: 256 VHKSVYTTNIENLGFDGMKAHF-------------VTPEG-EFDAHIHIPGEHNVYNAMA 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376
           AA + + +G+  A +   +EK   + GR  F+ T+   G   +D  + +N + M     +
Sbjct: 302 AAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIKTH---GMTVIDDCYNANPVSMKSSIEV 358

Query: 377 RTITSGRIIVVFGCGGD 393
            +   GR I V G  G+
Sbjct: 359 LSHAKGRTIAVLGDMGE 375


>gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
 gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
          Length = 272

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 17/216 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I +G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 36  EITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDINIE----- 90

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 91  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLIEKILSDYGY 145

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+ G
Sbjct: 146 HMGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 205

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  FTNL +DH+DYH T   Y + K  LF  L
Sbjct: 206 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARL 241


>gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
 gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
          Length = 459

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 174/376 (46%), Gaps = 43/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW++ ++  VS DSRH+  G +FV + G  +DGH ++P A   GA A + +S + + D  
Sbjct: 20  QWKDVEVTSVSFDSRHLDQGSLFVPLQG-AQDGHQYVPSAFTNGAVASLWASDHEITD-- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P+LVV++    L         K    ++AVTG++GK++    +  I       
Sbjct: 77  ----QTHPLLVVNDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASIL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH-VSVEASSHGLDQHRLDGI 202
           S Q   T T ++F  +N +  P        ++ L+ +  T  V VE      DQ  LD +
Sbjct: 127 STQFNVTKTYANF--NNEIGVP--------VTLLNMESNTEAVVVEMGMDRFDQ--LDFL 174

Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            KL+       T +G  HI++  T+    +AKM +   L  KE   +++  D    E  +
Sbjct: 175 SKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGL--KEDGTLVFNGDEPLLE--E 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV-EGKDFDFLFPLPGEFQVYNAL 316
           R  +   R +  G Q    +     ++H++ +Q++ +V E  D +F  P+ GE+ + NAL
Sbjct: 231 RVKDLTQRQMRFGRQ--LSNNLYATSVHDEPRQLSFTVNEWPDEEFTIPMVGEYNINNAL 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD-YAHTSNSLEMILK 374
            A  +   + I  A + + L  + +   R E+V G N  G +I  D Y     + + +LK
Sbjct: 289 AAMEVGKILHITPAHMKQALANVELTENRAEWVKGKN--GEQILSDVYNSNPTAAKEVLK 346

Query: 375 NI-RTITSGRIIVVFG 389
            I  T   GR I V G
Sbjct: 347 TIAETPVDGRRIAVLG 362


>gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 185

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 7/186 (3%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHR 198
           GLDQ R
Sbjct: 180 GLDQGR 185


>gi|289750755|ref|ZP_06510133.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T92]
 gi|289758279|ref|ZP_06517657.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T85]
 gi|289691342|gb|EFD58771.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T92]
 gi|289713843|gb|EFD77855.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T85]
          Length = 120

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 60/92 (65%), Gaps = 6/92 (6%)

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGF 439
           +VFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G          
Sbjct: 1   MVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQV 60

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +E  +R +AIR A+      DV+++AGKGHET
Sbjct: 61  VEIADRRDAIRHAVAWARPGDVVLIAGKGHET 92


>gi|171742535|ref|ZP_02918342.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283456379|ref|YP_003360943.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278149|gb|EDT45810.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283103013|gb|ADB10119.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 521

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 125/500 (25%), Positives = 213/500 (42%), Gaps = 60/500 (12%)

Query: 30  INEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +  ++ D+R ++ G  +FV      E    F+     +G  A V  + Y+        R+
Sbjct: 46  VGSITYDTRKVEPGSMLFVKGRFKPE----FLDGIDGKGLAAYVAETEYA-------DRT 94

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               ++V++  K +SL ++  YG  P+N L V G +   +           + L+ +  G
Sbjct: 95  KAIGIIVEDVHKAMSLLSAAFYGM-PQNELTVIGIT--GTKGKTTTAYLAHAILNEYSHG 151

Query: 149 PTSTISSF--------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  SS            ++LTTP  +   + +   +  G+ ++ +E SS     +R+ 
Sbjct: 152 RCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNRVH 211

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+    G+F N+  DHI    H T + YF  K R    L+      ++ AD  +   +M+
Sbjct: 212 GLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRR----LIANSRSLVLGADCNHRDLLMQ 267

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAI------HNKQQVTISVEGKDFDFL-FPLPGEFQ 311
            A +AG +V           L     +       NK    +SV G D   +   + GEF 
Sbjct: 268 DAADAGVKVTEFALHDAARGLTSPAQVIARVDPENKAGFIVSVNGSDLRPMELDMSGEFN 327

Query: 312 VYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           V NA  A  + I  G+ +S   +  + ++  VPGR E V     G  +Y+D+AH   S++
Sbjct: 328 VTNAAAAVAIAIEAGVPESDPSIAAMCRVQ-VPGRMERVKAGD-GLLVYIDFAHNYLSVK 385

Query: 371 MILKN-IRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++   +RT      RI +V G  G +   +R  + K AL   +  I T D+P  EDP  
Sbjct: 386 SLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGIVKGALGRVESFIFTLDDPNYEDPMD 445

Query: 428 I-------------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           I             R +I+      IEK     AI  A E  ++ ++++V GKG ET +I
Sbjct: 446 IARQMQSYVTDPTARTQIVVPRELAIEK-----AIADAREHADRFNIVLVIGKGDETRNI 500

Query: 475 VTNGEKKMSVDCDIIREILG 494
           +         D  ++R +LG
Sbjct: 501 INGKPVPYEGDGAVVRRVLG 520


>gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter sp. PRwf-1]
 gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. PRwf-1]
          Length = 505

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 165/382 (43%), Gaps = 36/382 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   + +D+R I+AG IF+AIVG   DGH F+  A+ +GA A +VS   S          
Sbjct: 41  RATRIITDTRKIEAGDIFLAIVGENFDGHSFVASAVEKGAIATIVSQPLS--------EV 92

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           N P L VD+TR      A+    +HP   ++A+TG+SGK++V   ++ I  +   +S  +
Sbjct: 93  NVPQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTGSSGKTTVKEMLRHIFAQVEAASADV 152

Query: 148 GPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLI 205
             T+ ++    +N    P  +  L +   Y   + G  HV   A +  +       +K  
Sbjct: 153 QSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLELGANHVGEIAYTAAM-------VKPD 205

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     +      K  +++  L + S A++  DD YS ++M  A     
Sbjct: 206 VACILNIGTAHLGEFGGRDNIAKTKAEIYQP-LTQASTAVVPCDDDYSDQLMSTAKQHTD 264

Query: 266 RVLSVGYQ----------GKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQV 312
            ++  G+             +    K  A+ ++ Q+  ++EGK       L P+ GE  V
Sbjct: 265 TIIGFGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFAIEGKAPAMVSVLLPMAGEHNV 324

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM- 371
            NAL AA    A G+ + L+ + L +     GR    G    G    +D  + +N   M 
Sbjct: 325 SNALAAAACAYAAGVSAELIAQGLNQAKSSKGRL---GRQRLGQHHIIDDTYNANPNSMR 381

Query: 372 ILKNIRTITSGRIIVVFGCGGD 393
              ++     G  I+V G  G+
Sbjct: 382 AAADVLAAQEGTRILVLGDIGE 403


>gi|306822448|ref|ZP_07455826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553993|gb|EFM41902.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 521

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 125/500 (25%), Positives = 213/500 (42%), Gaps = 60/500 (12%)

Query: 30  INEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +  ++ D+R ++ G  +FV      E    F+     +G  A V  + Y+        R+
Sbjct: 46  VGSITYDTRKVEPGSMLFVKGRFKPE----FLDGIDGKGLAAYVAETEYA-------DRT 94

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               ++V++  K +SL ++  YG  P+N L V G +   +           + L+ +  G
Sbjct: 95  KAIGIIVEDVHKAMSLLSAAFYGM-PQNELTVIGIT--GTKGKTTTAYLAHAILNEYSHG 151

Query: 149 PTSTISSF--------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  SS            ++LTTP  +   + +   +  G+ ++ +E SS     +R+ 
Sbjct: 152 RCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNRVH 211

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+    G+F N+  DHI    H T + YF  K R    L+      ++ AD  +   +M+
Sbjct: 212 GLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRR----LIANSRSLVLGADCDHRDLLMQ 267

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAI------HNKQQVTISVEGKDFDFL-FPLPGEFQ 311
            A +AG +V           L     +       NK    +SV G D   +   + GEF 
Sbjct: 268 DAADAGIKVTEFALHDAARGLTSPAQVIARVDPENKAGFIVSVNGSDLRPMELDMSGEFN 327

Query: 312 VYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           V NA  A  + I  G+ +S   +  + ++  VPGR E V     G  +Y+D+AH   S++
Sbjct: 328 VTNAAAAVAIAIEAGVPESDPSIAAMCRVQ-VPGRMERVKAGD-GLLVYIDFAHNYLSVK 385

Query: 371 MILKN-IRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++   +RT      RI +V G  G +   +R  + K AL   +  I T D+P  EDP  
Sbjct: 386 SLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGIVKGALGRVESFIFTLDDPNYEDPMD 445

Query: 428 I-------------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           I             R +I+      IEK     AI  A E  ++ ++++V GKG ET +I
Sbjct: 446 IARQMQSYVTDPTARTQIVVPRELAIEK-----AIADAREHADRFNIVLVIGKGDETRNI 500

Query: 475 VTNGEKKMSVDCDIIREILG 494
           +         D  ++R +LG
Sbjct: 501 INGKPVPYEGDGAVVRRVLG 520


>gi|325473282|gb|EGC76477.1| hypothetical protein HMPREF9353_02272 [Treponema denticola F0402]
          Length = 268

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 23/196 (11%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K++     L G F V N L +      I G+D A ++E L  +  V GR   +    +  
Sbjct: 59  KEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEKLPLVKPVKGRMMLI-DEGQDF 117

Query: 357 RIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            + +DYAHT +S   I  +I+     + G++I +FG GG+RD  KRP  G+IA   +DI 
Sbjct: 118 EVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSGGERDVKKRPEQGRIAALYSDIV 177

Query: 414 IVTDDNPRSED------------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           I+ D++PR ED            PEK R E +  IP      +R  AI+ A  +  K D 
Sbjct: 178 ILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIP------DRPSAIKKAFSLAGKNDA 231

Query: 462 LVVAGKGHETVHIVTN 477
           +++ GKGHE   I  +
Sbjct: 232 VLLLGKGHENSIIFKD 247


>gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.]
          Length = 493

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 149/348 (42%), Gaps = 23/348 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR I  G +FVAI GN  DGH F    + QG + IV++   + +     +++    
Sbjct: 32  VSIDSRTIALGELFVAIKGNNHDGHAFAEAVVEQGIKGIVINKQKAGELLCDKLKNQDVF 91

Query: 93  LV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + VDNT K L   A+    +   +++A+TG++GK+S       I  R      +    S
Sbjct: 92  CIEVDNTTKALGDLAAYNRTRADVSVVAITGSNGKTSTKEMANAIVSR------KFDTLS 145

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +   +N +  P  +     L   SSQ    + +  +  G      +  K   G  TN
Sbjct: 146 TTGNL--NNEIGLPLTL-----LKLCSSQKWAVLELGMNHPGEIARLAEICKPDIGIITN 198

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H++  +T +   NAK  L + + P +  AI+ ADD   + VM  A      V+  G
Sbjct: 199 IGRGHLEGLKTIEGVMNAKGELLDGIKP-DGTAILNADD---ERVMCLARKTTRNVIYFG 254

Query: 272 Y-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   I    V    N     + +           PG F V NAL AA +   + + + 
Sbjct: 255 LSENALIKASSVEVNKNLTSFVLKLPDDSIRVELNAPGRFMVSNALAAASVGYLLNLSAQ 314

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
            +   LE    V GR     T  + G   +D ++ +N  S+E  +K++
Sbjct: 315 EIKSGLENFAPVKGRMNI--TTLQNGVTIIDDSYNANPDSMEAAIKSL 360


>gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 511

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 39/276 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++  +S+ I    +FVAI G   DGH +I QA  +GA   +V      +DF   I   
Sbjct: 25  IKKICYNSKFITESSLFVAIKGYITDGHKYILQAYEKGAVCAIV------EDF---IDCE 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P L V+NTR  L+  +   Y    +  NI+ +T T+GK++ +  + +I   +G  +  I
Sbjct: 76  IPQLKVENTRIELANVSKNFYDDPSQKLNIVGITATNGKTTTSFMLDKIYNDAGYRTGII 135

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T  S     + LTTP  + L      +  + +  V++E SS   + +R+  I    
Sbjct: 136 GTVYTKYSDITIPSVLTTPESLELQSFFRDMLKKKIEKVTMEVSSSSEELYRVKNIDFNI 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +F N  R+HID H + + Y+ AK +L +E   K + AI+  D                 
Sbjct: 196 VAFNNFSREHIDQHGSFEKYYEAKSKLVKEA-SKNAVAILNMD----------------- 237

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                    F H+K +      + +T S+E  D+DF
Sbjct: 238 ---------FDHIKDLLTQTKARVITYSLENNDYDF 264


>gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
 gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
          Length = 466

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 147/329 (44%), Gaps = 40/329 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA   +V    S++  +     
Sbjct: 38  KFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKGATGAIVEKGRSVEGIAC---- 93

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               + VDNT       A     +    ++A+TG+SGK++    V  +      + F + 
Sbjct: 94  ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 145

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
            T    +F  +        I L K L  L+++    V VE    GL Q  ++ + LIA  
Sbjct: 146 KTE--KNFNNE--------IGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 192

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD Y K  M R     
Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVK-AMDRLAKGK 250

Query: 265 CRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAG 320
                +      I  HL+     + K  +  + +  D  FD   P+ GE  VY+AL A  
Sbjct: 251 TITYGIERNATCIGSHLR-----YKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIV 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +GI S  + + L +    P R E V
Sbjct: 306 AGRVLGIKSNTIRKGLSEFSGTPMRQEIV 334


>gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
 gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
          Length = 454

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 196/472 (41%), Gaps = 69/472 (14%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           FP+   ++ I  +S+DSR+I+ G IFVA+ G+K DGH F   A+ +GA A+++      +
Sbjct: 21  FPVIISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAEVAVEKGATALILD-----K 75

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
             S    +  P  +V+NT K     A     +    I+AVTG+ GK++    +  +   +
Sbjct: 76  KLSVLSTNEIPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVTGSVGKTTTKELIAAVLSTA 135

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G     IG          +N +  P  +     L +    GV  +++ A   G      +
Sbjct: 136 GKVHKSIG--------NYNNEIGVPKTLL---ELDHTHHYGVIEMAMRAK--GEISLLTE 182

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +   G  TN+G  HI    +Q+A   AK  L  + + ++S AI+  D++   E     
Sbjct: 183 ITRPTIGVITNVGTAHIGRLGSQEAIAEAKCELLAQ-MSQDSIAILNHDNSLLLETASTF 241

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                + ++ G +G  +  + +    N Q  T+ VEGK+F    PLPG     N L A  
Sbjct: 242 WQG--KTITYGLEGGDLSGQLI----NPQ--TLRVEGKEFP--LPLPGRHNALNYLAALA 291

Query: 321 LCIAIGIDSALVLEHL--------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           +   + +D   + E L         + H +P     +      G           S+   
Sbjct: 292 VAKVLDLDWTPLTEGLTVNLPSGRSRRHQLPNNILILDETYNAGL---------ESMLAA 342

Query: 373 LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPE-- 426
           L+ ++     R I V G     G+R       +GK   DL  D  +V  ++P++E     
Sbjct: 343 LQLLKETPGKRHIAVLGTMKELGERSPQFHHQVGKAVKDLGIDHLVVLVNDPQAEHIAAG 402

Query: 427 ---------KIRAEIIHGIPGFIEKGNRI--------EAIRTAIEMLNKQDV 461
                    K   E+++ + G I+ G+RI        E  R   +++N Q++
Sbjct: 403 ADGVATSCFKTHQEVVNYLQGLIKSGDRILFKASNSVELNRVVNDLINSQEI 454


>gi|291457655|ref|ZP_06597045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380708|gb|EFE88226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
          Length = 515

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 217/499 (43%), Gaps = 64/499 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ D+R +  G +       K D    I QA   G  A +  + YS     A  R+  P 
Sbjct: 44  ITYDTRKVTPGTLLCCKGRFKADYLTDIDQA---GLAAYMAETEYS-----AVTRA--PG 93

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRSGLSSFQIGP 149
           L+V++ RK +SL ++  YG+ P++ L V G +G       A FVQ +     L+++  G 
Sbjct: 94  LIVNDARKAMSLLSAEFYGR-PQDELTVIGITGTKGKTTTAYFVQAV-----LNAYSGGR 147

Query: 150 TSTISS---------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            +  SS         +A+ + LTTP  +   + +   ++ G+ ++ +E SS      R+ 
Sbjct: 148 AALFSSVDNCLDGHTYAESD-LTTPESMDAFRMMREAANNGMRYLVMEVSSQAYKVERVY 206

Query: 201 GIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+   AG+F N+  DHI    H T + Y   K ++           ++ AD  ++  + +
Sbjct: 207 GLTFDAGAFLNISPDHISAIEHPTFEDYLYCKRQITHNC----RTLVLGADCDHADLIRQ 262

Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYN 314
            A  +   V +       G   H   V             +GK   DF   L GEF   N
Sbjct: 263 DAQASNVPVTTFALHAADGHGTHADFVALPDASSGYLFQEQGKAIGDFSLELEGEFNAAN 322

Query: 315 ALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH---TSNSLE 370
           A  A  L  A+G+ + +     LE +H +PGR E   + +     YVDYAH   ++ +L 
Sbjct: 323 AAAAIALSRAVGVPAGSEAFRALEHVH-IPGRMEHYESGNMVA--YVDYAHNYVSTKTLA 379

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             + +     + R++VV G  GD+   +R  + K A D AD  I+T     +ED    R 
Sbjct: 380 EFVTHKYADRNPRVVVVTGSVGDKAVDRREGIIKGAQDYADRIILT-----AEDTVHERM 434

Query: 431 -EIIHGIPGFIEKG--------NRIEAIRTAIE----MLNKQDVLVVAGKGHETVHIVTN 477
            +I+H + G+I           +R +AI  A+E      ++  +L+V GKG E    V  
Sbjct: 435 IDILHEMQGYITNPRVVSDIELDRAKAIEKAVEDAHAHADRLTILLVIGKGEERWIKVDG 494

Query: 478 GEKKMSVDCDIIREILGLI 496
                  D  +++ + GL+
Sbjct: 495 KHAPYEGDDHVVKRLFGLL 513


>gi|229817371|ref|ZP_04447653.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
 gi|229785160|gb|EEP21274.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
          Length = 513

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 205/468 (43%), Gaps = 50/468 (10%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F P+ +  G E   +++  +  D S+   +  P L+V++ RK LSL A+  Y  HPE  L
Sbjct: 63  FRPEFL-DGTEERGLAAYVAESDLSS--HTTKPGLIVNDARKALSLLAAAFY-DHPERDL 118

Query: 119 AVTGTSGKSSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSP 167
            V G +G       A F Q I     L+++  G  +  SS           ++ LTTP  
Sbjct: 119 TVIGITGTKGKTTTAYFTQSI-----LNTYSAGRCALFSSVDNCLDGHTYAESDLTTPES 173

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           +   + +      G+ ++ +E SS     +R+ G+     +F N+  DHI    H T + 
Sbjct: 174 LDAFRMMRQAVDNGMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISPIEHPTFED 233

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCA 284
           YF+ K ++        S A++   D    ++++  A  AG  V      G    + ++  
Sbjct: 234 YFHCKRQII-----ANSRALVLGADCDHHDLLREDAKAAGIDVTEFAMGGDAQVVTRLDP 288

Query: 285 IHNKQQVTISVEGKDFDFLFPLP----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            + +  +    +G+    L P+     GEF + NA  A  +    G+ ++    H  +  
Sbjct: 289 NNKEGFIATISDGERSVTLEPMALDMTGEFNIVNAAAAIAIAHRAGVPASSQAMHAVQNV 348

Query: 341 VVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDR 394
            VPGR E +    RGG    +YVD+AH   S++ ++  I  +    + RI +V G  G +
Sbjct: 349 QVPGRMERI----RGGDNLLVYVDFAHNYISVKSLVDEIERVYGERNPRITLVSGTTGGK 404

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-------- 446
              +R  + K AL   +  I T D+P  EDP  I  ++   +     +   +        
Sbjct: 405 AIDRREGIVKGALGRVESFIFTLDDPNFEDPTDIARQMQSYVTDPAAQTQIVMPREDAVA 464

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AI  A E  ++ +V++V GKG ET +I+         D  ++R +LG
Sbjct: 465 KAIADAREHNDRFNVVLVIGKGDETRNIINGKPVPYEGDSVVVRRVLG 512


>gi|257456337|ref|ZP_05621534.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446423|gb|EEV21469.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 202

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 14/179 (7%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + +  AL+A      + +D  + L  L++L  V GR   V    +   + +DYAHT +S 
Sbjct: 2   YNILAALIAVHNLTGLPLDELVPL--LKRLVPVKGRMCRV-EAGQDFEVIIDYAHTPSSF 58

Query: 370 EMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++I+  +R       GR+I VFG GG+RD  KRP  G+IA +  D  I+TD++PR EDP 
Sbjct: 59  QLIMPPVRERIKAKGGRVIAVFGSGGERDTVKRPEQGRIAAEYCDTIILTDEDPRGEDPV 118

Query: 427 KIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           ++   I  G P        FI   +R  AIR A  +    D +++ GKGHE   I  +G
Sbjct: 119 ELLEMIAEGCPDKKRGEELFIIP-DRPTAIRKAFSLAQANDAVLLLGKGHENSIIGKDG 176


>gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
 gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
          Length = 452

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 147/329 (44%), Gaps = 40/329 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA   +V    S++  +     
Sbjct: 24  KFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKGATGAIVEKGRSVEGIAC---- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               + VDNT       A     +    ++A+TG+SGK++    V  +      + F + 
Sbjct: 80  ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
            T    +F  +        I L K L  L+++    V VE    GL Q  ++ + LIA  
Sbjct: 132 KTE--KNFNNE--------IGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 178

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD Y K  M R     
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVK-AMDRLAKGK 236

Query: 265 CRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAG 320
                +      I  HL+     + K  +  + +  D  FD   P+ GE  VY+AL A  
Sbjct: 237 TITYGIERNATCIGSHLR-----YKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIV 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +GI S  + + L +    P R E V
Sbjct: 292 AGRVLGIKSNTIRKGLSEFSGTPMRQEIV 320


>gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 258

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 17/216 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I +G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  EITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDINIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL   R+  
Sbjct: 132 HTGLMGNNGVKVGSKWYSTDINTQGPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKE 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  FTNL +DH+DYH T   Y + K  LF  L
Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARL 227


>gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
 gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 459

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 174/376 (46%), Gaps = 43/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW++ ++  VS DSRH+  G +FV + G  +DGH ++P A   GA A + +S + + D  
Sbjct: 20  QWKDVEVTSVSFDSRHLDQGSLFVPLQG-AQDGHQYVPSAFTNGAVASLWASDHEITD-- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P+LVV +    L         K    ++AVTG++GK++    +  I       
Sbjct: 77  ----QTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASIL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           S Q     T ++F  +N +  P        ++ L+ +  T   V     G+D+  +LD +
Sbjct: 127 STQFNVAKTYANF--NNEIGVP--------VTLLNMESNTEAVV--VEMGMDRFGQLDFL 174

Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            KL+       T +G  HI++  T+    +AKM +   L  KE   +++  D    E  +
Sbjct: 175 SKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGL--KEDGTLVFNGDEPLLE--E 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV-EGKDFDFLFPLPGEFQVYNAL 316
           R  +   R +  G Q    +     ++H++ +Q++ +V E  D +F  P+ GE+ + NAL
Sbjct: 231 RVKDLAQRQMRFGRQ--LSNNLYATSVHDEPRQLSFTVNEWPDEEFTIPMVGEYNINNAL 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD-YAHTSNSLEMILK 374
            A  +   + I  A + + L  + +   R E+V G N  G +I  D Y     + + +LK
Sbjct: 289 AAMEVGKILHITPAHMKQALANVELTENRAEWVKGKN--GEQILSDVYNSNPTAAKEVLK 346

Query: 375 NI-RTITSGRIIVVFG 389
            I  T  +GR I V G
Sbjct: 347 TIAETPVAGRRIAVLG 362


>gi|302853199|ref|XP_002958116.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
           nagariensis]
 gi|300256584|gb|EFJ40847.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
           nagariensis]
          Length = 696

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 17/248 (6%)

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDF 302
           +I ADD  ++E+++R +NA   V++ G       +      +N  + +V I         
Sbjct: 387 VINADDPATEELLRRLNNA-VPVVTFGMSNSRADVFVESYKNNIWETEVIIRTPTGRLQI 445

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           +  L G    YN + A    +A+      ++  +E + + PGR E +        + VD 
Sbjct: 446 ITNLLGRHNAYNLVAAVATGVALKAPLQSIVAGIEAVEI-PGRSEVIDEGQEFS-VVVDA 503

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A +  +L  +L  +R   + +I  VFGC G+ D   RP MG +A   +D  IVT++NPR 
Sbjct: 504 AQSPETLASMLDALRRGGARQIFTVFGCSGNEDPSIRPKMGAVAHAKSDYVIVTNENPRL 563

Query: 423 EDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHE-- 470
           EDP K +         +++K           +R  AIR AI     +DV+++AGKGH+  
Sbjct: 564 EDPAKDQGRTPLWFEPYLQKAQRDNKRYIMEDRYSAIRAAIGTAGPEDVVLLAGKGHQDW 623

Query: 471 TVHIVTNG 478
             H  T+G
Sbjct: 624 VEHADTDG 631


>gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
 gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri]
 gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
          Length = 459

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 174/376 (46%), Gaps = 43/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW++ ++  VS DSRH+  G +FV + G  +DGH ++P A   GA A + +S + + D  
Sbjct: 20  QWKDVEVTSVSFDSRHLDQGSLFVPLQG-AQDGHQYVPSAFTNGAVASLWASDHEITD-- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P+LVV +    L         K    ++AVTG++GK++    +  I       
Sbjct: 77  ----QTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASIL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           S Q     T ++F  +N +  P        ++ L+ +  T   V     G+D+  +LD +
Sbjct: 127 STQFNVAKTYANF--NNEIGVP--------VTLLNMESNTEAVV--VEMGMDRFGQLDFL 174

Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            KL+       T +G  HI++  T+    +AKM +   L  KE   +++  D    E  +
Sbjct: 175 SKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGL--KEDGTLVFNGDEPLLE--E 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV-EGKDFDFLFPLPGEFQVYNAL 316
           R  +   R +  G Q    +     ++H++ +Q++ +V E  D +F  P+ GE+ + NAL
Sbjct: 231 RVKDLAQRQMRFGRQ--LSNNLYATSVHDEPRQLSFTVNEWPDEEFTIPMVGEYNINNAL 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD-YAHTSNSLEMILK 374
            A  +   + I  A + + L  + +   R E+V G N  G +I  D Y     + + +LK
Sbjct: 289 AAMEVGKILHITPAHMKQALANVELTENRAEWVKGKN--GEQILSDVYNSNPTAAKEVLK 346

Query: 375 NI-RTITSGRIIVVFG 389
            I  T  +GR I V G
Sbjct: 347 TIAETPVAGRRIAVLG 362


>gi|219558137|ref|ZP_03537213.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T17]
          Length = 262

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 10/214 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 45  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 101

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 102 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 160

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 161 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 219

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G+FTNL RDH+D+H +   YF AK  LF+
Sbjct: 220 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 253


>gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
 gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
          Length = 455

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 169/385 (43%), Gaps = 36/385 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR ++AG +FVA+ G+K DGH FI +A  +GA   +V      ++F A +   
Sbjct: 26  VTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGAAGAIV------EEFPAELPPG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +++V NT + L    +         ++ +TG++GK+S       +       +FQ+  
Sbjct: 80  FGVILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTSTKDLTASVLG----ENFQV-- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T T  +   +N +  P  +  A+    +     G+ H    A    +    +       G
Sbjct: 134 TKTDGNL--NNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAPLAAMAAPEV-------G 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI++  +++A    K  +  E LP     I+ A+D +S  +  R       V
Sbjct: 185 IITNIGMAHIEFLGSREAIAQEK-GMLAEALPPSGTLILSAEDEFSPAIAARTK---ADV 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +  G     +    +    +  + TI+ EG+       +PGE  V NA++A     A G+
Sbjct: 241 VLAGINKGEVFASDLRPSASGTKFTINAEGRTAAAELSVPGEHMVRNAMLAVAAGRAFGL 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRII 385
                   L KL +  GR E      RG ++  D Y    +S+   L+ + ++ + GR I
Sbjct: 301 SLEECAAGLSKLRLTKGRLEQ--KMIRGIQVIDDTYNANPDSVAAALRTLASMPAVGRRI 358

Query: 386 VVFG----CGGDRDQGKRPIMGKIA 406
            V G     G + ++G R ++G++A
Sbjct: 359 AVLGRMGELGVEAERGHR-LVGEVA 382


>gi|289570275|ref|ZP_06450502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
 gi|289544029|gb|EFD47677.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
          Length = 276

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 10/214 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 59  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G+FTNL RDH+D+H +   YF AK  LF+
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 267


>gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 459

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 169/374 (45%), Gaps = 39/374 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW++ ++  VS DSRH++ G +FV + G   DGH ++  A   GA A + +S + L +  
Sbjct: 20  QWKDIEVTSVSFDSRHLEKGALFVPLQG-AHDGHQYVETAFTNGAAATLWASDHELTN-- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               S+ P+LVV +  K L         K    ++AVTG++GK++    +  I       
Sbjct: 77  ----SDHPVLVVTDPLKALQELGKYYLRKINPIVVAVTGSNGKTTTKDMIASIL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           S Q+  T T ++F  +N +  P        ++ L+ +  T V V     G+D+  +LD +
Sbjct: 127 STQLNVTKTYANF--NNEIGVP--------VTLLNMEANTEVVV--VEMGMDRFGQLDFL 174

Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            KL++      T +G  HI++  T+    +AKM +   L  KE    +Y  D     + +
Sbjct: 175 SKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGL--KEDGLFVY--DGDEPLLNE 230

Query: 259 RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           RA N   +    G Q    ++   V A     +  ++ E  D  F  P+ GE+ V NAL 
Sbjct: 231 RAANITQQTTRFGRQLTDDLYATSVNAGSRSIEFKVN-EWPDEQFTIPMVGEYNVNNALA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A  +   + I    +   L  + +   R E+  + + G +I  D Y     + + +LK +
Sbjct: 290 AMAVAKRLHISPNHIKTALANVELTENRAEWFKSKN-GAQILSDVYNSNPTAAKQVLKTL 348

Query: 377 RTI-TSGRIIVVFG 389
             +   GR I V G
Sbjct: 349 AEMPVQGRRIAVLG 362


>gi|2959999|emb|CAA76495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni]
          Length = 350

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 141/296 (47%), Gaps = 44/296 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172
           I+ +TGT+GK++ A+ +  I    G   ++ G   T  +F  D ++     T SPI   K
Sbjct: 85  IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 139

Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            L YL   + +      +  SSH L  +R +G+   A  FTN+ +DH+D+  T   Y  A
Sbjct: 140 TLEYLLIATPKKCDFFIMGVSSHALVPNRSEGLNFAAKIFTNITQDHLDFRGTFGNYKEA 199

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F +    ES   I  D    K  ++ A        + G +   ++  K  ++    
Sbjct: 200 KELFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGI 248

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHVV 342
              ++ + + F    PL G F +YN LVA+  C+     + LV   L+ LEK       V
Sbjct: 249 STIVTNKNQTFHIDSPLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGGV 302

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
            GR E V   ++G  + VD+AHT + +E +L    T+ + ++IVVFG GGDRD+ K
Sbjct: 303 CGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTK 350


>gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 469

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 189/450 (42%), Gaps = 61/450 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR    G +FVAIVG   DGH+F+  A  +G    +VS+   + D       
Sbjct: 26  EITNIVIDSRLAGPGAMFVAIVGESTDGHIFLESAHQEGCRFFLVSNESYITDRF----K 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           ++ ++ VDNT   L L A           + +TG+ GK++    V  +      S F   
Sbjct: 82  DSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGKTTTRDMVYSVLA----SKF--- 134

Query: 149 PTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             +TI +    +N+   P  ++  +            + +  S  G  ++  + ++   G
Sbjct: 135 --NTIKNEKNYNNQFGVPLTLFRLEP-----GHQCAVIEMGMSGFGEIEYLANIVRPKIG 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---G 264
             TN+G  HI++  +Q+  F AKM +      + S  II  DD+Y +  ++R  N+    
Sbjct: 188 IITNIGMSHIEHLGSQEGIFKAKMEITSG-FDQTSSLIINGDDSYLRTELERYRNSQKDS 246

Query: 265 CRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            +V S G   Q       +     +K + T S E + ++F  P  GE  V NA+ A    
Sbjct: 247 YKVYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNAMAA---- 302

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--------YAHTSNSLEMILK 374
           I  G  + + +E + K     G  +FV T +R   I  D        Y  + +S+   LK
Sbjct: 303 ILAGHITGMTMEEISK-----GLLDFVATENRQDIIKTDRFTLINDVYNASPDSMIAALK 357

Query: 375 NIRTITSGRIIVVFG-C---GGDRDQGKRPIMGKIALDLADIAIVT---------DDNPR 421
            ++     R + + G C   G   ++G R + G  ++D ADI I           +   R
Sbjct: 358 VLKLYKDRRRVAILGDCLEMGQYAEEGHRRV-GYQSIDKADIIITAGHAAKFIGVEAMER 416

Query: 422 SEDPEKI-----RAEIIHGIPGFIEKGNRI 446
             D  ++     + E+I  +P  +E G+ I
Sbjct: 417 GFDLSRVFHFETKEELIDSLPKIVEDGDVI 446


>gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 514

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 174/391 (44%), Gaps = 49/391 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V   S+ ++   +FVAI G + DGH FI  A+A GA A +V      +DF   +  
Sbjct: 27  EISSVEFHSKKVKKRTLFVAIKGYRVDGHDFIKDAVASGAVAAIV------EDF---VEE 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSSF 145
           +   + V N+R  L+  AS  +G+ P   L VTG   ++GK+S A   + I  ++G   +
Sbjct: 78  DILQIKVKNSRIALAKVASIFFGE-PSKKLKVTGITASNGKTSTAFMTKCIYDKAG---Y 133

Query: 146 QIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             G + T+ +   D    + LTTP    L      + ++G+ HV +E SS   +  R   
Sbjct: 134 NTGISGTVYTKYADVEIPSILTTPESKDLQYYFYDMVNKGIDHVIMEVSSSAGELARAYA 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                 +F N+  +HI  H + + Y++ K RL       +  AI+ +D     ++    +
Sbjct: 194 TDFDIVTFNNITPEHIVNHGSFERYYHVKSRLIRHA-KDDCVAILNSDFELINDLR---N 249

Query: 262 NAGCRV------------------LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           N   +V                  LS G+ GKF    K     + +   I+++ + FD  
Sbjct: 250 NTKAQVVTYSLKNNLEDISIDNLDLSTGF-GKF----KFIVNRDIKLKGITIKKQSFDVE 304

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V NA+VA  + +  GID   +L  ++    V  RFE +     G +I  D+ 
Sbjct: 305 LKVAGYSSVMNAIVAITIGLVNGIDLDTILAGIQDFTGVERRFEVIF--DEGFKIVDDHF 362

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
              N++E+ L  +  +    + +++   G R
Sbjct: 363 ANKNNIEVTLDTLSKMDYKNLDILYAIRGSR 393


>gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
 gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 452

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 148/331 (44%), Gaps = 44/331 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +  ++S+D+R I+AG++FVA+ G+  DGH FI  AI +GA A +V    S+         
Sbjct: 24  QFKDISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKGATAAIVEKGRSVDGIIC---- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               + V+NT K     A+    +    ++A+TG+SGK++    V  +       S +  
Sbjct: 80  ----VEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTTKEMVAAVL------STEFN 129

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
              T  +F  +        I L K L  LS +    V VE    GL Q  ++ + LIA  
Sbjct: 130 VLKTEKNFNNE--------IGLPKTLLQLSPEHEACV-VEMGMRGLGQ--IEELALIAEP 178

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI+   +Q+A   AK  L   L P +S AI+  DD + K +   A    
Sbjct: 179 TIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGP-DSVAILNEDDHFVKAMSSIAEG-- 235

Query: 265 CRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVA 318
            + ++ G          HL+     + K  +  + +  D  FD   P+ GE  VY+AL A
Sbjct: 236 -KTVTYGIHSNATVIGSHLR-----YKKDGIKFTCKCYDEVFDVFLPMIGEHNVYDALAA 289

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 +G+ S+ + + L      P R E V
Sbjct: 290 IAAGRVLGVKSSKIKKGLSDFTGTPMRQEIV 320


>gi|289447786|ref|ZP_06437530.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420744|gb|EFD17945.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
          Length = 404

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 10/214 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 59  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143
           R+  P+LV    R  L   A+ +YG HP   L V G +G S   +    V+   + +G  
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +  IG T  I     D  + LTTP    L   L+ +  +GV  V +E SSH L   R+DG
Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G+FTNL RDH+D+H +   YF AK  LF+
Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 267


>gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
 gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
          Length = 459

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 175/397 (44%), Gaps = 44/397 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R I  G +F+A+ GN  DGH F+  A   GA  +++S   S +    T+     +
Sbjct: 29  VNTDTRTISPGELFIALQGNTFDGHHFLNDACINGASMVIISERSSFKAVPRTV----SV 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V NT+  L   A     K    ++AVTG++GK++  + +      + L + ++   +T
Sbjct: 85  ILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTTTKNMI------AALVASKLNVCAT 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA----G 207
             +F  +          +  +L+ LS    T    VE    GL Q  +  +  IA    G
Sbjct: 139 QKNFNNE----------IGLSLTLLSMTPETEACVVEMGMRGLGQ--IAELCRIAAPTIG 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI    +Q+    AK  L E  LP +  AI+  DD Y   V++        +
Sbjct: 187 VVTNVGTSHIGILGSQENIAKAKGELIES-LPDKGIAILNEDDPY---VIRMGDTFSGNI 242

Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  G  G + +H  ++   +N  +   +   + F     + G   VYNAL A      +G
Sbjct: 243 IGYGVNGNYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLGIHNVYNALAATATARVLG 302

Query: 327 IDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
           ID   + + L +   +PG  R  F   N   G   +D ++ +N  S+EM    +R +   
Sbjct: 303 IDVNRIQKALSEF--LPGAQRQFFTEIN---GVTVIDDSYNANPLSMEMAFHAMRQVNGK 357

Query: 383 RIIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVT 416
              +V G  G+  + +      +GKIA ++    ++T
Sbjct: 358 HYFLVLGDMGELGEKEEQFHYELGKIAANIGFDGMIT 394


>gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 503

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 156/358 (43%), Gaps = 55/358 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++VA+ G + DGH F  +A+A+GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVLVDRL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VVDNT   L+  A+ +       +LA+TG++GK+SV + +  I Q +G      G 
Sbjct: 76  VPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL       GS   + R       T+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERL-------GSLLGVAR-------TKGAIYAA--------LPADGVAVINADDAFG 230

Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGE 309
              ++ ++     G RVL  G Q       +   +H    Q T+     +     PLPG 
Sbjct: 231 MWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAQIALPLPGR 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             V NAL A GL +  GI   ++ + L +   V GR   +      G + +D ++ +N
Sbjct: 291 HNVLNALAATGLALGAGIALPVIADGLAQARAVAGR--QIAQTLPNGAVLIDDSYNAN 346


>gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
 gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
          Length = 482

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 160/375 (42%), Gaps = 22/375 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  V++DSR +Q G +FVA++G + D H F+P  +A+GA A++VS   +     A  
Sbjct: 27  DAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPLA----GALD 82

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            S   +L V +TR  L   A+    + P  ++AVTG++GK++V   +  +  R+      
Sbjct: 83  LSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFARA------ 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205
           +G  + +++    N     + I L   L  L +Q    V     +H  +   L  I +  
Sbjct: 137 VGEEARLATAGNLN-----NDIGLPLTLFRLHAQHRLAVLELGMNHPGETEVLATIAQPT 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHNA 263
                N  R+H ++  + +A       +    LP +  A+   D A   E   + RA   
Sbjct: 192 VALINNAQREHQEFMVSVEAVAIEHAAVLAA-LPADGVAVFPRDAANGGEYAPLWRAAAG 250

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             RVL  G +G  +    V    + Q + +      F F  PL G     NAL A    +
Sbjct: 251 TRRVLDFGIEGGAVS-ATVTDTADGQHIDVHAPDLRFSFTLPLLGVHNARNALAATACSL 309

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A GI   ++ + L     V GR +       GG +  D Y    +S+   +  + T+ + 
Sbjct: 310 AAGIAPEVIAQALSAFAPVKGRLQR-KPGVHGGLVVDDTYNANPDSVRAAIDALATLPAP 368

Query: 383 RIIVVFGCGGDRDQG 397
           R +V+   G    QG
Sbjct: 369 RWLVLGDMGEVGTQG 383


>gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
 gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
          Length = 503

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 156/358 (43%), Gaps = 55/358 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++VA+ G + DGH F  +A+A+GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVLVDRL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VVDNT   L+  A+ +       +LA+TG++GK+SV + +  I Q +G      G 
Sbjct: 76  VPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL       GS   + R       T+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERL-------GSLLGVAR-------TKGAIYAA--------LPADGVAVINADDAFG 230

Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGE 309
              ++ ++     G RVL  G Q       +   +H    Q T+     +     PLPG 
Sbjct: 231 MWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAPIALPLPGR 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             V NAL A GL +  GI   ++ + L +   V GR   +      G + +D ++ +N
Sbjct: 291 HNVLNALAATGLALGAGIALPVIADGLAQARAVAGR--QIAQTLPNGAVLIDDSYNAN 346


>gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Asticcacaulis excentricus CB 48]
 gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Asticcacaulis excentricus CB 48]
          Length = 462

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 158/364 (43%), Gaps = 33/364 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR +Q G IF+A+ G + DGH F+ QA AQGA   +                  P 
Sbjct: 33  ITFDSRQVQPGDIFLALSGVR-DGHDFVGQAFAQGAVCALTRKPVD----------GGPC 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +  K L    +    + P    AVTG+ GK+SV   V     R+G +       S 
Sbjct: 82  LMVPDVLKALEKLGAYARDRAPAMRGAVTGSVGKTSVTQMVMAALSRAGRAH------SA 135

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + SF  +N +  P  + LA+ +   + + V  + +  ++       L  ++  A   T +
Sbjct: 136 VKSF--NNHIGVP--LTLAR-MPADTERAVFEIGMNHANEITPLSEL--VEPDAVIITTV 188

Query: 213 GRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G  H + +   ++    AK  +F+ L      AI+ AD+ +  E+ +RA   G +V   G
Sbjct: 189 GAVHTENFPDGEEGVMKAKAEIFDGL-KYGGLAILNADNHWFAELNERASEMGAKVQCFG 247

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +G    L     +  + QV  ++ G+D  F     G+ Q  NAL    +C A+ +D+A
Sbjct: 248 EAEGADACLISHEVVDGRAQVCATLHGRDIAFTLAHTGKHQALNALSVLLMCEALKVDTA 307

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI-----LKNIRTITSGRI 384
             L  L     + GR         GG +  +D ++ +N + M+     L   R +T GR 
Sbjct: 308 TTLAALSAFEALDGRGAEHQIAVAGGHVTLIDESYNANPISMVATLNALAARRLVTGGRR 367

Query: 385 IVVF 388
           I V 
Sbjct: 368 IAVM 371


>gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
 gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
          Length = 466

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 148/331 (44%), Gaps = 44/331 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K  ++S+D+R I++G++FVA+ G+  DGH FI  AI +GA   +V    +++  +     
Sbjct: 38  KFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGATGAIVEKGRAVEGIAC---- 93

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               + VDNT       A     +    ++A+TG+SGK++    V  +      + F + 
Sbjct: 94  ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 145

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
            T               + I L K L  L+++    V VE    GL Q  ++ + LIA  
Sbjct: 146 KTEK----------NYNNEIGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 192

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD Y K +   A    
Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVKAMDSLAKG-- 249

Query: 265 CRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVA 318
            + ++ G +        HL+     + K  +  + +  D  FD   P+ GE  VY+AL A
Sbjct: 250 -KTITYGIERNATCIGSHLR-----YKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAA 303

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 +GI S  + + L +    P R E V
Sbjct: 304 IVAGRVLGIKSNTIRKGLSEFTGTPMRQEIV 334


>gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 495

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 147/342 (42%), Gaps = 23/342 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++VA+ G + DGH F   A+AQGA  ++V      +    T+   
Sbjct: 24  IDAVGNDTRALSNGSLYVALRGERVDGHDFAADALAQGASGLLV------ERLLPTL--G 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV NT   L+  A+ +       ++A+TG++GK+SV + +  I   +G      G 
Sbjct: 76  VPQVVVQNTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAILTEAGRVD---GT 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   +   ++N +  P  +  A          V    + A   G   +  D  +      
Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAP-----DDADVAIYEMGAGKPGDIAYLTDIARPQVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN---AGCR 266
            N+   H++   +       K  ++   LP +  A+I ADDA+     ++ H     G R
Sbjct: 188 NNIAPAHLERLGSLLGVAQTKGAIYAA-LPSDGVAVINADDAFGAWFEQQLHAQPVPGRR 246

Query: 267 VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           VL  G Q    I  +++    +  Q T+     +     PLPG   V NAL A GL +  
Sbjct: 247 VLRYGLQASADIRARQLRLQADGAQFTLVTPQGEAQVTLPLPGRHNVLNALAATGLALGA 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GI   ++   L +   V GR   +     GG + VD ++ +N
Sbjct: 307 GIALPIIAAGLAQARPVAGR--QIAHRLPGGAVLVDDSYNAN 346


>gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
 gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
          Length = 497

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 184/449 (40%), Gaps = 63/449 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +L+Y   P +I Q    P  W   +I  V +DSR +  G +FVA+ G + DGH F+
Sbjct: 2   IRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFL 61

Query: 61  PQAIAQGAEAIVVSS------AYSLQDFS--------------ATIRSNTPILV-VDNTR 99
              + +GA A +VS       A +L   +              AT+  +  +L+ VD+  
Sbjct: 62  ADVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPL 121

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
             L   A          ++ +TG+ GK+S    V  +C R  L + +       S  + +
Sbjct: 122 FALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRR-LRTLK-------SQRSFN 173

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           + +T P     A  L   +   V  + +   + G  +      +   G  TN+G  H++ 
Sbjct: 174 SEVTLP-----ATLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLER 228

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IH 278
             + +A  NAK  L E  LP +   I+ ADD     V   A     RVL+ GY     + 
Sbjct: 229 LGSIEAIANAKAELPES-LPADGWCILNADD---HRVAAMASRTAARVLTYGYAPNADVR 284

Query: 279 LKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           L  V + H     ++T+  EG+      PL G    Y AL A    + +G+D   + E L
Sbjct: 285 LLDVVS-HGLYGIELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGL 343

Query: 337 E------KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFG 389
                  +L +VPG+          G   +D  + +  L  I    +   T GR I V G
Sbjct: 344 REPGEQLRLRIVPGQH---------GTTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLG 394

Query: 390 ----CGGDRDQGKRPIMGKIALDLADIAI 414
                G    +G + + G  A  +AD+ +
Sbjct: 395 EMLELGAASVEGHQQV-GAAAATMADVLV 422


>gi|315283078|ref|ZP_07871348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria marthii FSL S4-120]
 gi|313613276|gb|EFR87150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria marthii FSL S4-120]
          Length = 123

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNR 445
           GCGGDRD+GKRP M KIA+D A   I T DNPRSE+P  I  ++I G+P    ++   NR
Sbjct: 10  GCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENR 69

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +AIR AI      DV+++AGKGHE   ++ +
Sbjct: 70  RDAIRFAINEAKTGDVILIAGKGHEDYQLIGD 101


>gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
 gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
          Length = 452

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 147/331 (44%), Gaps = 44/331 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K  ++S+D+R I++G++FVA+ G+  DGH FI  AI +GA   +V    +++  +     
Sbjct: 24  KFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGATGAIVEKGRAVEGIAC---- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               + VDNT       A     +    ++A+TG+SGK++    V  +      + F + 
Sbjct: 80  ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
            T               + I L K L  L+++    V VE    GL Q  ++ + LIA  
Sbjct: 132 KTEK----------NYNNEIGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 178

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD Y K +   A    
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVKAMDSLAKG-- 235

Query: 265 CRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            + ++ G +      G  +  KK     +  + T     + FD   P+ GE  VY+AL A
Sbjct: 236 -KTITYGIERNATCIGSHLRYKK-----DGIKFTCKCYDEVFDIFLPMIGEHNVYDALAA 289

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 +GI S  + + L +    P R E V
Sbjct: 290 IVAGRVLGIKSNTIRKGLSEFTGTPMRQEIV 320


>gi|159477677|ref|XP_001696935.1| hypothetical protein CHLREDRAFT_192674 [Chlamydomonas reinhardtii]
 gi|158274847|gb|EDP00627.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 513

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 41/270 (15%)

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVE 296
           P+    ++ ADD  ++++++R   A   V++ G   +G  +  + + +   + ++ +   
Sbjct: 170 PETQALVLNADDPAAEQLLERLGGA-VPVVTYGVVNKGADVVAESIKSNIWETELIVRTP 228

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G     +  L G   V N L A    +A+    A ++  +E + + PGR E +       
Sbjct: 229 GGRLQIITNLLGRHNVANVLAAVATGVALKAPLASIVAGIEAVEI-PGRSEVIDEGQEFS 287

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VD A T  +L  +L  +R   + +I  VFGC G+ D   RP MG +A   +D  I+T
Sbjct: 288 -VVVDAARTPEALGDMLDALRAGGARQIFTVFGCSGNEDASIRPRMGAVAHAKSDYVIIT 346

Query: 417 DDNPRSEDPEKIRAEIIHGIPG-------------FIEKG-------------------- 443
           ++NPR EDP K+ A+I+ G P              F ++G                    
Sbjct: 347 NENPRLEDPAKVVADIVAGFPDDMVNRYSAYAYFPFQDQGRTPLWFEPYLQKAQRDNKRY 406

Query: 444 ---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
              +R  AIR AI     +DV+++AGKG E
Sbjct: 407 VMEDRYSAIRAAIGTAGPEDVVLLAGKGSE 436


>gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 483

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 170/375 (45%), Gaps = 41/375 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW++ ++  VS DSRH++ G +F+ + G   DGH ++  A   GA A + +S + L +  
Sbjct: 44  QWKDIEVTSVSFDSRHLERGALFIPLQG-AHDGHQYVETAFTNGAAATLWASDHELTN-- 100

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               +  P+LVV +  K L         K    ++AVTG++GK++    +  I       
Sbjct: 101 ----NGHPVLVVTDPLKALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASIL------ 150

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           S Q+  T T ++F  +N +  P        ++ L+ +  T V V     G+D+  +LD +
Sbjct: 151 STQLNVTKTYANF--NNEIGVP--------VTLLNMEANTEVVV--VEMGMDRFGQLDFL 198

Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            KL++      T +G  HI++  T+    +AKM +   L  KE   ++Y  D     + +
Sbjct: 199 SKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGL--KEDGLLVY--DGDEPLLNE 254

Query: 259 RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNAL 316
           RA     +    G Q    ++   V A    + ++  V E  D  F  P+ GE+ V NAL
Sbjct: 255 RAAKVAQQTSRFGRQLTDDLYATSVTA--GPRSISFKVNEWPDEQFTIPMVGEYNVNNAL 312

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A  +   + I  A +   L  + +   R E+  + + G +I  D Y     + + +LK 
Sbjct: 313 AAMVVAKRLHISPAHIKTALANVELTENRAEWFKSKN-GAQILSDVYNSNPTAAKQVLKT 371

Query: 376 IRTI-TSGRIIVVFG 389
           +  +   GR I V G
Sbjct: 372 LAAMPVQGRRIAVLG 386


>gi|313607760|gb|EFR83977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria monocytogenes FSL F2-208]
          Length = 115

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 3/92 (3%)

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNR 445
           GCGGDRD+GKRP M KIA+D A   I T DNPRSE+P  I  ++I G+P    ++   NR
Sbjct: 2   GCGGDRDKGKRPQMAKIAVDYASNPIFTSDNPRSENPHAIIEDMIQGVPNSDSYVVHENR 61

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            +AIR A+      DV+++AGKGHE   ++ +
Sbjct: 62  RDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD 93


>gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS155]
 gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella baltica OS155]
          Length = 460

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 168/370 (45%), Gaps = 43/370 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++V    +          +
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V + +K +    + +  +     +A+TG++GK+SV   +  I      +  QI  
Sbjct: 75  IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQI-- 128

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +F  +N +  P + + L  A  + +   G  H      + GL       ++    
Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGL-------VRPNVA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H++   +Q     AK  +F  L   +  AII ADDA++  +  +A     + 
Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNHL-QADGTAIINADDAFADFMSVKARPY--KQ 236

Query: 268 LSVGYQGKFI--HLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           LS   Q      H+  +   H        +  ++  G+    + PL G  QV NAL AA 
Sbjct: 237 LSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAAS 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIR 377
           +CIA+G++   + E L +L  V GR +     S+ GR+  +D ++ +N  S+   +  ++
Sbjct: 297 VCIALGLNLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAAIAWLK 352

Query: 378 TITSGRIIVV 387
            I+  R +V+
Sbjct: 353 EISENRCLVL 362


>gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
 gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
          Length = 493

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 184/451 (40%), Gaps = 71/451 (15%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +++Y   P    Q+   P QW+E    E   DSR ++ G +FVA+ G + +GH F+P 
Sbjct: 4   LANILYGVQPAWSRQMPYIPPQWQELVFGETVIDSREVEPGTLFVALAGERTNGHTFLPD 63

Query: 63  AIAQGAEAIVVSSA---------------YSLQD--FSATIRSNTP----ILVVDNTRKF 101
            IA+GA   +VS                 ++L +    A + S TP    ++ VD+    
Sbjct: 64  VIARGALGALVSRTEIEARTTILARTPRRWALVNPVTGAGLDSATPGVCLLIAVDDPLMA 123

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSV-----ASFVQQICQRSGLSSFQIGPTSTISSF 156
           L   A     +    ++ +TG+ GK+S      A   Q+ C      SF           
Sbjct: 124 LQRLAVYHRRQLTPTVVGITGSVGKTSTKEALAALLSQRFCTLKSKRSF----------- 172

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             ++  T P+ +     L    +  V  + +   + G  +   D  +   G  TN+G  H
Sbjct: 173 --NSEATVPTTL-----LQLAPAHEVAVLEMGMWAPGEIRFLADLARPQIGLVTNVGPTH 225

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ++  ++Q+A + AK  L EE LP++  A++ ADD      M+   NA  RV S G     
Sbjct: 226 LERLKSQEAIWYAKAELVEE-LPRDGWAVLNADDPLVW-AMRDMTNA--RVFSYGLAPHA 281

Query: 277 IHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                    +    + + V  +D       PL G   +Y AL A  + + +G++   ++ 
Sbjct: 282 TLWANQVESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLALAAMSVGLILGMEWPAMIA 341

Query: 335 HL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVV 387
            L       +L VV G+              +D  + +  +  +   ++   T GR + +
Sbjct: 342 GLTDPAAQARLRVVAGQH---------ATTLIDDTYNAAPISTLAALDLLGATPGRRVAI 392

Query: 388 FG----CGGDRDQGKRPIMGKIALDLADIAI 414
            G     G   ++G R + G+ A  +AD+ +
Sbjct: 393 LGDMLELGSAEEEGHRQV-GQRAAQVADLLV 422


>gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
 gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
          Length = 460

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 166/375 (44%), Gaps = 53/375 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++V    +          +
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142
            P L+V + +K +    + +  +     +A+TG++GK+SV   +        QI   +G 
Sbjct: 75  IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   T+       RLT+     + +        G  H      + GL       +
Sbjct: 135 FNNEIGVPLTLL------RLTSADEFGIFEL-------GANHKGEIDYTSGL-------V 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H++   +Q     AK  +F   L  +  AII ADDA++  +  +A  
Sbjct: 175 RPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFADFMSVKARP 233

Query: 263 AGCRVLSVGYQGKFI--HLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNA 315
              + LS   Q      H+  +   H        +  +S  G+    + PL G  QV NA
Sbjct: 234 --YKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLSYLGESCQVVLPLAGRHQVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMI 372
           L AA +CIA+G+    + E L +L  V GR +     S+ GR+  +D ++ +N  S+   
Sbjct: 292 LAAASVCIALGLSLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAA 347

Query: 373 LKNIRTITSGRIIVV 387
           +  ++ I+  R +V+
Sbjct: 348 IAWLKEISENRCLVL 362


>gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
 gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
          Length = 460

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 167/370 (45%), Gaps = 43/370 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++V    +          +
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V + +K +    + +  +     +A+TG++GK+SV   +  I      +  QI  
Sbjct: 75  IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQI-- 128

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +F  +N +  P + + L  A  + +   G  H      + GL       ++    
Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGL-------VRPNVA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H++   +Q     AK  +F   L  +  AII ADDA++  +  +A     + 
Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFADFMSVKARP--YKQ 236

Query: 268 LSVGYQGKFI--HLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           LS   Q      H+  +   H        +  ++  G+    + PL G  QV NAL AA 
Sbjct: 237 LSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAAS 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIR 377
           +CIA+G+    + E L +L  V GR +     S+ GR+  +D ++ +N  S+   +  ++
Sbjct: 297 VCIALGLSLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAAIAWLK 352

Query: 378 TITSGRIIVV 387
            I+  R +V+
Sbjct: 353 EISENRCLVL 362


>gi|270700814|ref|ZP_06223056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae HK1212]
 gi|270315852|gb|EFA27951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae HK1212]
          Length = 209

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 15/177 (8%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N P++      + LS  A   Y    +N+  + VTGT+GK++++  + Q  +  G  +  
Sbjct: 5   NVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAV 64

Query: 147 IGPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G   TI +    Q  + + TT S + +  +LS     G    S+E SSHGL QHR++ +
Sbjct: 65  MG---TIGNGLLGQIVEAKNTTGSAVEIQSSLSIFKHAGADFTSIEVSSHGLAQHRVEAL 121

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       A  A++K ++ R
Sbjct: 122 HFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQ------IAASAFAKMLLTR 172


>gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
 gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
          Length = 487

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 183/456 (40%), Gaps = 77/456 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +L+Y   P    Q+   P  W +R+I  V  DSR +  G +FVA+ G + DGHL++
Sbjct: 2   IRLDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLYL 61

Query: 61  PQAIAQGAEAIVVSSA---YSLQDFSATIR-------------SNTP-----ILVVDNTR 99
           P  + +GA A +VS A       D+SA  R             +  P      + VD+  
Sbjct: 62  PDVVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDPL 121

Query: 100 KFL---SLFASRLYGKHPENILAVTGTSGKSSVASFVQQI---------CQRSGLSSFQI 147
             L   +++  R++      ++ +TG+ GK+S    V  +          QRS  S   +
Sbjct: 122 CALQRAAVYHRRMFTP---TVIGITGSVGKTSTKEVVAAVISQRLRTLKSQRSFNSDITL 178

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            P + +   A          ++ A  + +L++    H+                     G
Sbjct: 179 -PATLLGLTADHQVAVLEMGMWAAGEIRFLAALARPHI---------------------G 216

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H++   + +A  NAK  L E L P +   I+ ADD     + KR       V
Sbjct: 217 IVTNVGPSHLERLGSIEAIANAKAELPESL-PPDGWCILNADDPRVAAMAKRTP---AHV 272

Query: 268 LSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           ++ G+      ++ V  I +     ++T+S +G+      PL G    Y  L A    + 
Sbjct: 273 VTYGF-APHADVRAVEVISHGLYGIELTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALV 331

Query: 325 IGIDSALVLEHLEKLHVVPG-RFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSG 382
           +G+D   +   L      PG R      N + G   +D  + +  L  I    +   T G
Sbjct: 332 VGLDWEAIAAGLRD----PGERLRLRVVNGQQGVTIIDDTYNAAPLSTIAALEVLAETPG 387

Query: 383 RIIVVFG----CGGDRDQGKRPIMGKIALDLADIAI 414
           R I V G     G   ++G R + G  A   AD+ +
Sbjct: 388 RRIAVLGEMLELGSATEEGHRQV-GAAAARTADLLV 422


>gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           sp. W3-18-1]
 gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens CN-32]
 gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. W3-18-1]
 gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella putrefaciens CN-32]
          Length = 460

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 168/373 (45%), Gaps = 41/373 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++SSDSR +    +FVA+ G + DGH F   AI  GA A++V    +L         N
Sbjct: 24  IQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALMVERELAL---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V + +K +    + +  +     +A+TG++GK+SV   +  I      + +Q+  
Sbjct: 75  IPQLIVTDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKYQV-- 128

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +F  +N +  P + + L  A  Y +   G  H      + GL       ++    
Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSGL-------VRPNVA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H++   +Q     AK  +F   L  +  AII ADDA++ +VM        ++
Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFA-DVMSVKARPYKQL 237

Query: 268 LSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                +G       V A  +K       +  ++  G+  D   PL G  QV NAL AA +
Sbjct: 238 HFSQQEGAAKRRIDVIATGHKADADGCYRFMLNYLGESCDVKLPLAGRHQVSNALAAASV 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRT 378
           CIA+G+    +   L +L  V GR +     S+ GRI  +D ++ +N  S+   +  ++ 
Sbjct: 298 CIALGLSLTDIAHGLSQLTPVKGRMQ----PSQLGRIRLIDDSYNANPVSVGAAIAWLKE 353

Query: 379 ITSGRIIVVFGCG 391
           I+  R +V+   G
Sbjct: 354 ISENRCLVLGDLG 366


>gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
 gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
          Length = 461

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 201/479 (41%), Gaps = 71/479 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI ++S DSR I  G +FVAI+G + DGH FIP+A+++GA A++V   +S++ +      
Sbjct: 25  KITDISIDSRTINPGDMFVAIIGERFDGHSFIPEAVSKGARALIVD--HSIKAYPGV--- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ILV D TR    L            ++ +TG++GK++    +  + +       +  
Sbjct: 80  -GIILVEDTTRALQDLARYHRMLIKGLTVIGITGSAGKTTTKDMIASVLKE------KYN 132

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
            T T  +             Y    L+ LS  G   ++V      +   +L  I+L+A  
Sbjct: 133 VTKTRGNLNN----------YYGLPLTLLSLDGDEEIAVLE----MGMSKLGEIELLASI 178

Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                G  TN+G  H++  +T       K  L E  LP    AI+  D+ Y +++  + +
Sbjct: 179 SKPDIGVITNVGPTHLENLKTVGNVARGKRELIEG-LPTNGLAILNYDNKYVRDM--KDY 235

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEF 310
             G +V+  G+  +      V A H    + +  + K+  F+              PG+ 
Sbjct: 236 VEGKKVIYYGFSPE----ADVYAEH----IKVDEKNKNISFIAHYKTEKERITLQKPGKH 287

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            VYNAL A  +   + +D   +   L  + +   R++     +    I   Y     S++
Sbjct: 288 NVYNALAAIAVARYLRVDWGGIKNGLYNIDLSSLRWDVRDLGNEITLINDTYNANPLSMK 347

Query: 371 MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPR--SED 424
             ++    I   R+I V G     GD ++     +G+ +A    D+ I   +  R  +  
Sbjct: 348 AAIEATFDIAQERVITVLGGMLELGDMEEKAHVDLGRYVAERNVDVLITVGELGRLTARS 407

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG----KGHETVHIVTNGE 479
            EK       G+    +  N  EA R  ++++ K D ++V G    K  E V +V++ E
Sbjct: 408 AEK------EGMKNVYQADNNQEASRVLLDLIKKGDTILVKGSRGNKMEEIVKMVSSQE 460


>gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 452

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 151/331 (45%), Gaps = 44/331 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA   +V    +++        
Sbjct: 24  KFLDVSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGATGAIVEKGRAVEGIICIEVE 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           NT +       + L+ +  R +   P  ++A+TG+SGK++    V  +      + F + 
Sbjct: 84  NTLV-----AYQNLARYHRRRF-DIP--VVAITGSSGKTTTKEMVAAVLG----TEFNVL 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
            T    +F  +        I L K L  L+++    V VE    GL Q  ++ + LIA  
Sbjct: 132 KTE--KNFNNE--------IGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 178

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD Y K +   A    
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVKAMDSLAKG-- 235

Query: 265 CRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            + ++ G +      G  +  KK     +  + T     + FD   P+ GE  VY+AL A
Sbjct: 236 -KTITYGIERNATCIGSHLRYKK-----DGIKFTCKCYDEVFDIFLPMIGEHNVYDALAA 289

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 +GI S  + + L +    P R E V
Sbjct: 290 IVAGRVLGIKSNTIRKGLSEFTGTPMRQEIV 320


>gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium wasabiae WPP163]
          Length = 453

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 157/373 (42%), Gaps = 44/373 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS    +         +
Sbjct: 24  IEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKRLHI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR  L    + +  +    ++A+TG+SGK+SV      I ++ G   +  G 
Sbjct: 75  VPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D       P+ L   L   +      + + A+  G   +  D ++  +   
Sbjct: 134 -----NFNND----IGVPLTL---LRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRA 260
            NL   H++   +      AK  +F   LP +  AI+ AD             K V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAQAKGEIFSG-LPVDGVAIVNADSNDFPHWQVTLNHKTVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A C +        F     V  +    + T+     D   L PLPG   V NAL A  
Sbjct: 241 PQAACNI-------DFFA-SDVAVLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +++G     V   L +L  VPGR   +  +   G++ +D ++ +N  S+    + +  
Sbjct: 293 LAMSVGATLEAVKAGLSQLQAVPGRLFPIALSE--GKLLLDDSYNANVGSMTAAAQVLAD 350

Query: 379 ITSGRIIVVFGCG 391
           +   R++VV   G
Sbjct: 351 MPGYRVMVVGDMG 363


>gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 540

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 175/392 (44%), Gaps = 50/392 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI+ ++  S+++    +F  + G++ DGH F  +A  +GA A++V               
Sbjct: 36  KISGLNYHSQNVSQNELFFCLTGHQYDGHAFAEKAYNKGAVALIVEREIP---------- 85

Query: 89  NTPIL--VVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143
           + P+L  VV+N+R+ LS  +++ Y +HP    N++ +T T+GK++    + QI   +  +
Sbjct: 86  HIPLLQVVVENSRRALSHLSAKFY-QHPSKSMNMIGITSTNGKTTTTYMIDQILSSNKPT 144

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                    +    +++ LTTP  + L + L+ +  + + + ++E SS GL+  R+  + 
Sbjct: 145 GLLGTVIVKLGEETKESDLTTPESLDLQRYLASMKRKNINYCTMEVSSSGLELERVSAVD 204

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+ RDHID H + + YF AK RL EE + ++  A+I  D    +   K  +  
Sbjct: 205 YDIAIINNISRDHIDQHGSFENYFAAKQRLVEE-IQEDKRAVINVD---CENACKMINYT 260

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQ- 311
             +V++   +G    +     I N   + +S     FD +           +  PG F+ 
Sbjct: 261 KAKVITYSVKG----IDATIGIDN---LDLSSGSASFDLVINRGFSTLSGKWIKPGRFKI 313

Query: 312 ---------VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                    VYNA  AA   + +      +   L K   V  RF+ +    +  +I  D+
Sbjct: 314 KLKVLGLHNVYNATSAAISTLLLDEPITRIQSELAKFSGVERRFQLIF--DKKFKIIDDH 371

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
                ++E+ ++ +  +    + +++   G R
Sbjct: 372 FANPGNIEVTMETLGKMDFNNLKILYAIRGGR 403


>gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS678]
          Length = 460

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 163/368 (44%), Gaps = 39/368 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++V    +          +
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V + +K +      +  +     +A+TG++GK+SV   +  I      +  QI  
Sbjct: 75  IPQLIVPDCQKAMGAIGVYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQI-- 128

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +F  +N +  P + + L  A  + +   G  H      + GL       ++    
Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGL-------VRPNVA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H++   +Q     AK  +F   L  +  AII ADDA++  +  +A       
Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFADFMSVKARPYKQLS 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            S        H+  +   H        +  ++  G+    + PL G  QV NAL AA +C
Sbjct: 239 FSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAASVC 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRTI 379
           IA+G+    + E L +L  V GR +     S+ GR+  +D ++ +N  S+   +  ++ I
Sbjct: 299 IALGLSLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAAIAWLKEI 354

Query: 380 TSGRIIVV 387
           +  R +V+
Sbjct: 355 SENRCLVL 362


>gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
 gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
          Length = 452

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 146/331 (44%), Gaps = 44/331 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA   +V    ++         
Sbjct: 24  KFLDVSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKGATGAIVEKGRAVDGIVC---- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               + VDNT       A     +    ++A+TG+SGK++    V  +      + F + 
Sbjct: 80  ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
            T    +F  +        I L K L  L++     V VE    GL Q  ++ + LIA  
Sbjct: 132 KTE--KNFNNE--------IGLPKTLLRLTADHQACV-VEMGMRGLGQ--IEELALIAEP 178

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD Y K +   A    
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAQAKGELI-RCLPENSVAILNEDDPYVKAMDSLAKG-- 235

Query: 265 CRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            + ++ G +      G  +  KK     +  + T     + FD   P+ GE  VY+AL A
Sbjct: 236 -KTITYGIERNATCIGSHLRYKK-----DGIKFTCKCYDEVFDIFLPMIGEHNVYDALAA 289

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 +GI S  + + L +    P R E V
Sbjct: 290 IVAGRVLGIKSNTIRKGLSEFTGTPMRQEIV 320


>gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
 gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
          Length = 460

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 167/370 (45%), Gaps = 43/370 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++V    +          +
Sbjct: 24  IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V + +K +    + +  +     +A+TG++GK+SV   +  I      +  QI  
Sbjct: 75  IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQI-- 128

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +F  +N +  P + + L  A  + +   G  H      + GL       ++    
Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGL-------VRPNVA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H++   +Q     AK  +F   L  +  AII ADDA++  +  +A     + 
Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFADFMSVKARP--YKQ 236

Query: 268 LSVGYQGKFI--HLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           LS   Q      H+  +   H        +  ++  G+    + PL G  QV NAL AA 
Sbjct: 237 LSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYLGESCQVVLPLAGRHQVSNALAAAS 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIR 377
           +CIA+G+    + E L +L  V GR +     S+ GR+  +D ++ +N  S+   +  ++
Sbjct: 297 VCIALGLSLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAAIAWLK 352

Query: 378 TITSGRIIVV 387
            I+  R +V+
Sbjct: 353 EISENRCLVL 362


>gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
 gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
          Length = 460

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 170/388 (43%), Gaps = 35/388 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR I+   +F+A+ G + DGH F+  A  +GA A+++S +  L+     I  +  +
Sbjct: 29  VSIDSRTIKENDLFIALKGERFDGHDFVINACKKGASAVIISDSECLE----KISEDCTV 84

Query: 93  LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +V +T+K     A  +R+    P  ++AVTG++GK++    +  +      S F +  T
Sbjct: 85  FLVKDTKKAFEDLAHFNRMRFDIP--VVAVTGSNGKTTTKDMISALLS----SKFNVCST 138

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGS 208
                          + I L+  L  ++ +    V VE    G  Q +   +  K   G 
Sbjct: 139 EK----------NNNNEIGLSLTLLNITKEHDACV-VEMGMRGFGQIKELCNIAKPTIGV 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI    +++    AK  L +  LP+   A++  DD++   V K   N   RV+
Sbjct: 188 ITNVGTSHIGILGSKENIAKAKGELIQS-LPENGIAVLNGDDSF---VKKMGENFKGRVI 243

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G  G + ++ +KV   +   + T     + F     L G   VY+AL A      +G+
Sbjct: 244 YYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTARILGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385
           D   +   L       GR   +  N   G   +D A+ +N  S+EM L++++ I++    
Sbjct: 304 DVTKIQRVLSDFSPRAGRQSLIEIN---GIKIIDDAYNANPLSMEMALRSLKQISAKNKY 360

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +V     +  + +     +I L  AD+ 
Sbjct: 361 LVLADMKELGENEEKFHYEIGLKAADMG 388


>gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
          Length = 460

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 170/388 (43%), Gaps = 35/388 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR I+   +F+A+ G + DGH F+  A  +GA A+++S +  L+     I  +  +
Sbjct: 29  VSIDSRTIKENDLFIALKGERFDGHDFVINACKKGASAVIISDSECLE----KISEDCTV 84

Query: 93  LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +V +T+K     A  +R+    P  ++AVTG++GK++    +  +      S F +  T
Sbjct: 85  FLVKDTKKAFEDLAHFNRMRFDIP--VVAVTGSNGKTTTKDMISVLLS----SKFNVCST 138

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAGS 208
                          + I L+  L  ++ +    V VE    G  Q   L  I K   G 
Sbjct: 139 EK----------NNNNEIGLSLTLLNITKEHDACV-VEMGMRGFGQIEELCNIAKPTIGV 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI    +++    AK  L + L P+   A++  DD++   V K   N   RV+
Sbjct: 188 ITNVGTSHIGILGSKENIAKAKGELIQSL-PENGIAVLNGDDSF---VKKMGENFKGRVI 243

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G  G + ++ +KV   +   + T     + F     L G   VY+AL A      +G+
Sbjct: 244 YYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTARILGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385
           D   +   L       GR   +  N   G   +D A+ +N  S+EM L++++ I++    
Sbjct: 304 DVTKIQRVLSDFSPRAGRQSLIEIN---GIKIIDDAYNANPLSMEMALRSLKQISAKNKY 360

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +V     +  + +     +I L  AD+ 
Sbjct: 361 LVLADMKELGKNEEKFHYEIGLKAADMG 388


>gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 461

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 165/381 (43%), Gaps = 54/381 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  IN +  DSR + +G +F+ + G K DGH FI  A +QGA+A + S   SL    
Sbjct: 20  QWSDFTINTIEFDSRQLASGSLFIPL-GGKTDGHQFIMDARSQGAKAALWSKESSLAP-- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140
                  PIL V +T K +   A     K    ++AVTG++GK++    +  +  +    
Sbjct: 77  ----EGFPILEVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNGKTTTKDMIAAVLAKKYIT 132

Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  + QIG   TI    ++  +              +   G+ H            
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPEETEM-------------LVLEMGMDHAD---------- 169

Query: 197 HRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             +D +  +A     + T +G  HI+   ++Q    AKM + + L+ ++   II  ++  
Sbjct: 170 -EIDFLSQLASPTVAAITMIGEAHIENLGSRQEIAKAKMGITKGLV-EDGLLIIPENEPL 227

Query: 253 SKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            K +     N+   + + G+  +  F+   +   +  K + T  + G    F  P+PG++
Sbjct: 228 LKPL---TANSTQTIKTFGFTNEADFV---ECVQLEEKNKTTFKLSGYQLPFTIPVPGKY 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
            V NA +A  +     +    + + L ++H+   R E+V  N+ G  I  D Y     ++
Sbjct: 282 NVDNACIALIIGKWFQVPEKEMQQTLAEVHLTKNRTEWVTANN-GVEILSDVYNANPTAV 340

Query: 370 EMILKNI-RTITSGRIIVVFG 389
            ++L +  +  T+GR IVV G
Sbjct: 341 SLVLDSFGQMFTNGRRIVVLG 361


>gi|240147081|ref|ZP_04745682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
 gi|257200751|gb|EEU99035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
          Length = 401

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 169/389 (43%), Gaps = 42/389 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDFSAT 85
           I ++   S  ++ G +FV I G   DGH +I  A+  GA A+VV  +  +    + F  T
Sbjct: 23  ITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAFAVVVDESCMVNVRWECFIYT 82

Query: 86  ----------IRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---AS 131
                     +R+    ++ V +TR+ L+  ++  Y  +P   L + G +G       A 
Sbjct: 83  EHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFY-DYPAKKLKIIGITGTKGKTTTAF 141

Query: 132 FVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
               I + +G  +  +G   T +    +    TTP    L + L+ + S G     +E S
Sbjct: 142 LTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSDLQRELAQMVSNGCVCCVMEVS 201

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S G+   R++GI    G F N+  DHI    H +   Y   K RL  +        I+  
Sbjct: 202 SQGIKMQRVEGIFFDIGVFLNIEPDHIGPGEHASFAEYLYCKSRLLRQC----QAGIVNR 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV-EGKDF------ 300
           DD  +++++   H       SV G  G     +K   +   +++T S+ EG+ +      
Sbjct: 258 DDRNTEKIL-FGHTCDIETFSVLGENGVDAPGQKADIV--AERITFSMKEGRLYSHFFTD 314

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +FL  +PG F V NAL A  +     I   +V + L++   VPGR E V  + +   
Sbjct: 315 GKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDALQR-QTVPGRCENVRISDK-FV 372

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             VDYAH   SL  +L  +R    GR++V
Sbjct: 373 FLVDYAHNEMSLRNLLGTLRGFDPGRLVV 401


>gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
 gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
          Length = 465

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 154/358 (43%), Gaps = 32/358 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  E+       P    + ++ E+++DSR +  G +FVAI G K DGH FIP 
Sbjct: 1   MKNLTLRNITEVCGGTYHGPEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFIPG 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           + A GA A +   A +         ++  +++V +T + +   A     + P +++ + G
Sbjct: 61  SFADGALAALAEVAPA--------ETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGIIG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    V  +  +      +     T  +F  +N +  P   +  +    +   GV
Sbjct: 113 SVGKTSTKEMVAAVLAQ------KYRTLKTEGNF--NNEVGVPLTAFRMREEDEI---GV 161

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + +   +H  + HRL  I +     FTN+G  H+++  ++     AK  +F + + ++
Sbjct: 162 LEMGI---NHFGEMHRLAKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVF-DFMDEK 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----IHNKQQVT--ISV 295
              I+  DD      +   H        +G QG + H   V A     H  + ++  I  
Sbjct: 218 GHVIVNGDDD-KLSTISEVHGVAPVRFGIGEQG-YSHPNDVWADGIVSHGLEGISCVIHT 275

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           E   F+ + P  G   +YNAL    + +  G+    +   +E    + GRF  +  +S
Sbjct: 276 EAGSFEVMIPSSGRHMIYNALAGTAVGLVYGLTLEQIRSGIESYMPLSGRFHIIKGDS 333


>gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
 gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
          Length = 464

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 166/389 (42%), Gaps = 70/389 (17%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +WR   IN VS+DSR ++ G +F+A++G + DGH FI  A+  GA A+++S         
Sbjct: 21  KWR--IINGVSTDSRTVKPGQLFIALIGERYDGHDFIDNAVTNGASAVMLS--------K 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQI 136
            T   + PI+ V++T + L   A+         ++A+TG+SGK++   F+         +
Sbjct: 71  DTADWDIPIIKVEDTLEALKRLAAYYRRMFYLTVVAITGSSGKTTTKEFIYAVLSQKYNV 130

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLD 195
            +  G  + QIG   T+           P   Y    +  +S+ G  H   + A  H   
Sbjct: 131 LKNRGNLNNQIGLPLTVFDI-------NPHHQYAVLEMG-MSALGEIHDLADIARPH--- 179

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                      G  TN+G  HI+    QQ    AK+ LF +       A++  DD     
Sbjct: 180 ----------IGVITNIGLSHIEKLGNQQNILRAKLELF-DFFGDNDVAVLNGDDP---- 224

Query: 256 VMKRAHNA-GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQ 311
           ++   H+   CRVL    +GK  I +  +    N      +V  +G+  D    + G   
Sbjct: 225 LLCTLHSVLPCRVLYFSTRGKGDIKVLNIRLYKNGYYCYTAVLPDGQREDIYLNIAGFHN 284

Query: 312 VYNALVAAGLCIAIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGRIYVD------ 361
           VYN+L A    + +G+++ + L+     +E L+  P R        R  +IY D      
Sbjct: 285 VYNSLAA----VLVGMEANVPLKQIKAGIESLYDTPQRL-------RMFQIYPDIQLIDD 333

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFG 389
            Y    +S+   ++ +  + S R I V G
Sbjct: 334 TYNANPDSMRAAIEVLCDLDSARKIAVLG 362


>gi|153843974|ref|ZP_01993609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|149745274|gb|EDM56525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
          Length = 266

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 16/157 (10%)

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFD 301
           A I A+   SK+V++ AH A C   SV   G+               +TI  +G+  +  
Sbjct: 124 ANIVAESWRSKQVLQLAHRAACTNASVLITGE-------------SGITIRFDGQFGEGT 170

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL GEF   N ++A    +++G D + +L    +L  V GR E      R  ++ VD
Sbjct: 171 LHAPLIGEFNAANLMLAFATLLSLGFDKSDLLATAAQLQPVLGRMELFQAEHRA-KVVVD 229

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           YAHT ++LE  L+ +R    G++  +FGCGGDRD GK
Sbjct: 230 YAHTPDALEKALQALRVHCDGQLWAIFGCGGDRDAGK 266


>gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 459

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 168/390 (43%), Gaps = 33/390 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            +  +I    +D+R ++  ++F+ +VG + DGH FI  A ++GA A +  S   L++ S 
Sbjct: 26  LKNSEIQGAVNDNRKVEKDFLFIPMVGARVDGHDFIEDAFSKGALASL--SERKLENVSG 83

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P ++V++T+  L   A+    +    ++ V G+ GK+S    +  +      + 
Sbjct: 84  ------PYIIVEDTKLALKQIATDYRMQLNIPVIGVIGSVGKTSTKEMLSSVLA----TK 133

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
           F +  T    +F  +N +  P  I   K         V  V +  S  G + HRL  I K
Sbjct: 134 FNVLKTE--GNF--NNEIGLPLTICRIK-----DEHQVAVVEMGISDFG-EMHRLGDIAK 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+G+ H+++ +++     AK  +FE + PK    I+  DD    + +  A   
Sbjct: 184 PDYVVMTNIGQCHLEFLKSRDGILQAKTEVFEHM-PKNGTVILNGDD----DKLINADTL 238

Query: 264 GCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G   +  G  G+ +    + A      +  I++ G+ F+    LPG   V NAL AA + 
Sbjct: 239 GLNKIFYGLNGQEVSASDIVAEGMTGTRAVINLFGESFEATIQLPGTHNVMNALAAAAVG 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITS 381
             +G+ +  + + LEK   + GR   +          +D  + +N + M     +     
Sbjct: 299 KVLGLSNEEIKKGLEKASTIAGRNNVIEVRD---ITIIDDCYNANPVSMKASIEVLGKAP 355

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           GR I V G  G+    +R +  +I   L D
Sbjct: 356 GRTIAVLGDMGELGDDERQLHYEIGQTLED 385


>gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 503

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 153/358 (42%), Gaps = 55/358 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++VA+ G + DGH F  +A+A+GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVARGASGVLVERL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VVDNT   L+  A+ +       +LA+TG++GK+SV + +  I   +G      G 
Sbjct: 76  VPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSILTEAGRVD---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +  +A              QT+ A + A        LP    A+I ADDA+ 
Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYAA--------LPAGGVAVINADDAFG 230

Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
              ++ ++     G RVL  G Q       +   +H    Q T+     +     PLPG 
Sbjct: 231 MWFEQQLQSQPVQGRRVLRFGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGR 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             V NAL A GL +  GI   ++   L +   V GR   +      G + +D ++ +N
Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQARAVAGR--QIAQTLPNGAVLIDDSYNAN 346


>gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
 gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
          Length = 460

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 167/380 (43%), Gaps = 55/380 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +SSDSR I    +FVA+ G + DGH F   AI  GA A++V    +          +
Sbjct: 24  IQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLVERQLAF---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142
            P L+V + +K +    + +  +     +A+TG++GK+SV   +        Q+   +G 
Sbjct: 75  VPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGN 134

Query: 143 SSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            + +IG P + +   ++D              + Y SS    HV++              
Sbjct: 135 FNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSLVRPHVAL-------------- 180

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                    N+G  H++   +Q     AK  ++  L P  + AII ADDA++ +VM R  
Sbjct: 181 -------VNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGT-AIINADDAFA-DVM-RVK 230

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYN 314
               + LS   Q G       V A  +K       +  ++  G+  +   PL G  QV N
Sbjct: 231 AKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEM 371
           AL AA +CIA+G+    + E L +L  V GR +     ++ GR+  +D ++ +N  S+  
Sbjct: 291 ALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQ----PTQLGRVRLIDDSYNANPVSVGA 346

Query: 372 ILKNIRTITSGRIIVVFGCG 391
            +  ++ I+  R +V+   G
Sbjct: 347 AIAWLKEISENRCLVLGDLG 366


>gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens 200]
          Length = 460

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 166/373 (44%), Gaps = 41/373 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++SSDSR +    +FVA+ G + DGH F   AI  GA A++V    +L         N
Sbjct: 24  IQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALMVERELAL---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V + +K +    + +  +     +A+TG++GK+SV   +  I      +  Q+  
Sbjct: 75  IPQLIVADCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQV-- 128

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +F  +N +  P + + L  A  Y +   G  H      + GL       ++    
Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSGL-------VRPNVA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H++   +Q     AK  +F   L  +  AII ADDA++ +VM        ++
Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFA-DVMSVKARPYKQL 237

Query: 268 LSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                +G       V A  +K       +  +   G+  D   PL G  QV NAL AA +
Sbjct: 238 HFSQQEGAAKRRIDVIATGHKADADGCYRFMLKYLGESCDVKLPLAGRHQVSNALAAASV 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRT 378
           CIA+G+    +   L +L  V GR +     S+ GRI  +D ++ +N  S+   +  ++ 
Sbjct: 298 CIALGLSLTDIAHGLSQLTPVKGRMQ----PSQLGRIRLIDDSYNANPVSVGAAIAWLKE 353

Query: 379 ITSGRIIVVFGCG 391
           I+  R +V+   G
Sbjct: 354 ISENRCLVLGDLG 366


>gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis XB6B4]
          Length = 470

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 169/395 (42%), Gaps = 48/395 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++++I     DSR +++G++F+A+ G K DGH FIPQ   +GA A++     S Q+ S  
Sbjct: 24  KKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFEKGALAVL-----SEQELS-- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P + V++T   +   A+         ++ +TG+ GK+S    +  +  +      
Sbjct: 77  -EPAGPYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTSTKEMIASVLSQ------ 129

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203
           +     T  +F  +N +  P  I+  +    ++    G++        H L +     I 
Sbjct: 130 KYNVLKTEGNF--NNEIGLPLTIFKIREQHEVAVLEMGISEF---GEMHRLAEMAYPDIC 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +I    TN+G  H++   T+     AK   FE L P E  A++  DD   K   K+  N 
Sbjct: 185 VI----TNIGLCHLENLLTRDGILKAKTESFEHLTP-EGTAVLNGDD--DKLCEKKMVNG 237

Query: 264 GCRV---------LSVGYQG-KFIHLKKVCAIH------NKQQVTISVEGKDFDFLFPLP 307
              V         L+   QG K++  K+V A        +  +  I +  + F    P+ 
Sbjct: 238 KPVVFYGIGKEAKLAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIA 297

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VYNAL A  +   +G+    +   +E +  + GR   +    +GG   +D  + +N
Sbjct: 298 GEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRSNLI---HKGGMTIIDDCYNAN 354

Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI 401
            + M    ++     GR I V G  G+  + ++ +
Sbjct: 355 PVSMKASIDVLAAAPGRKIAVLGDMGELGENEQEL 389


>gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 503

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 151/358 (42%), Gaps = 55/358 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++VA+ G + DGH F  +A+A GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVACGASGVLVDRL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV+NT   L+  A+ +       +LA+TG++GK+SV + +  I Q +G      G 
Sbjct: 76  VPQVVVNNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAK----------------ALSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P  +  A                  ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +  +A              QT+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230

Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
              ++ ++     G RVL  G Q       +   +H    Q T+     +     PLPG 
Sbjct: 231 MWFEQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGR 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             V NAL A GL +  GI   ++   L +   V GR   +      G + +D ++ +N
Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQARPVAGR--QIAQTLPNGAVLIDDSYNAN 346


>gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium cellulovorans 743B]
          Length = 395

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 162/362 (44%), Gaps = 29/362 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSN 89
           N VS D+R ++ G I++AI G   DG+ F+ +AI +GAE  ++   AY+     A + + 
Sbjct: 27  NLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGAELCIIDKIAYT----EAEVLNK 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + I++V+NT+K L   A     K    ++ VTG++GK+S    +        L  F+   
Sbjct: 83  SAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKDLIAAALSEK-LKVFK--- 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T  +F  +N +  P  I+     +  ++  V  + +  S     Q   D  +   G  
Sbjct: 139 --TKGNF--NNEIGLPLMIF-----NLDNTYDVAVLEMGMSDLFEIQRLSDVARPDLGVI 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  HI+  +T++    AKM +      KE+  I+  DD Y   + K    A  R++ 
Sbjct: 190 TNIGISHIENLKTRENILKAKMEI-TTYFGKENLLIVNHDDQYLSTIDK----AEYRLIK 244

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 K I LK    +  +      +   +  F  P+PG+  + NAL+A      +G++
Sbjct: 245 ASISDDKNIDLKGESLVLKEDSCEFKL--NESKFYIPMPGKHNISNALLAIACARELGVE 302

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
             L+ +    +     R +     ++G  I  D Y  + +S++  ++ ++ +   R I V
Sbjct: 303 DQLINKGFLNIEATSMRLDI--EKNKGITIINDTYNASPDSMKAAIEVMKNLKGKRRIAV 360

Query: 388 FG 389
            G
Sbjct: 361 VG 362


>gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 458

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 178/414 (42%), Gaps = 45/414 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P+    R   +V +D+R +Q G +FVA+ G + DGH F+ QA+A+GA  +VV++    + 
Sbjct: 20  PVTGGNRTFLQVYTDTRSLQKGGLFVALKGERFDGHDFVLQAVAKGAAGVVVAA--REET 77

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           F+A      P+  V +T +     A     +    ++AVTG+ GK+S    +  +  +  
Sbjct: 78  FAAL---PVPVFAVPDTLRAYQALARFHRRRFALPVIAVTGSVGKTSTRQMIASVLSQK- 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L  +Q     T  +F  +        I L K L  L+++    V VE    G  Q  +  
Sbjct: 134 LRVWQ-----TEKNFNNE--------IGLPKTLLGLTAEHEACV-VEMGMRGPGQ--IAE 177

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           +  IA    G  TN+G+ HI+   +Q+    AK  L    LP    A++  DD     + 
Sbjct: 178 LAAIAEPTIGVVTNVGKSHIELLGSQENIAKAKGEL-PAALPATGTAVLNQDDWRVAAMA 236

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----PLPGEFQVY 313
           K      CR   +GY        +   I    +  +S   + FD  F    P+ G+  VY
Sbjct: 237 KL-----CRGKVIGYGTSVGAAVRAGEIQTDDK-GLSFICRCFDQTFRATVPVLGKHHVY 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEM 371
           NAL A      +G+    + + L     VP R E V     G   +++ A+ +N  S+E 
Sbjct: 291 NALAAVATARLLGLSETQMCKGLAAYAGVPMREELVHV---GPYTFINDAYNANPASMEE 347

Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++ +  +   + I V G     GD    +  ++GK     +  A++T   P S
Sbjct: 348 AVQTLAAVKKEQKIAVLGGMLELGDWTVREHELLGKKIAAASITALITLGTPAS 401


>gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 467

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 32/331 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  ++ +  DSR      +F+AI+G   DGH +I  A   G    +VS    + D     
Sbjct: 28  EASLSSIVIDSRQAGPDTMFIAIIGENTDGHKYIKSAYDLGCRTFMVSQELDILD----Q 83

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + I+ VDNT   +   A     K    ++ +TG+ GK++    V  +      + F+
Sbjct: 84  LDGSSIVCVDNTELAMGQLAKYYKNKFDIPVVGITGSVGKTTTRDMVYAVVS----NKFR 139

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +  +    +N+   P  I+     +  SS     + +  S  G   +  D ++   
Sbjct: 140 ----TLKNEKNLNNQFGVPLTIF-----NLDSSYECAVIEMGMSGFGEIDYLADIVRPDI 190

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              +N+G  HI++  +Q+  F AKM +  +   ++S  I+  DD Y  ++          
Sbjct: 191 AVISNIGTSHIEHLGSQEGIFKAKMEI-SDYFSEDSCLIVNGDDEYLSKLRAEKDAISYS 249

Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AGLCI 323
           + S G   K  I LK +  + NK    + +E K+ +F  P  GE  VYNA+ A   GL +
Sbjct: 250 LCSFGKDWKNTIVLKSIENLDNKTNFVVKLEDKEEEFSIPTVGEHNVYNAMSAILVGLRL 309

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + ID            +  G   FV T  R
Sbjct: 310 GMNID-----------EIRQGLMNFVATGDR 329


>gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
 gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
          Length = 460

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 169/379 (44%), Gaps = 53/379 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +SSDSR I    +FVA+ G++ DGH F   AI  GA A++V    +          +
Sbjct: 24  VQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLVERELAF---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142
            P L+V + +K +    + +  +     +A+TG++GK+SV   +        Q+   +G 
Sbjct: 75  IPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   T+          TP   Y    L      G  H      + GL       +
Sbjct: 135 FNNEIGVPLTLLRL-------TPEDKYGVFEL------GANHKGEIDYTSGL-------V 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H++   +Q     AK  ++  L  ++  AII ADDA++  +  +A +
Sbjct: 175 RPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHL-QEDGTAIINADDAFADVMRVKAKH 233

Query: 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYNA 315
              + LS   Q G       V A  +K       +  ++  G+  + + PL G  QV NA
Sbjct: 234 --YKQLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMI 372
           L AA +CIA+G++   + E L +L  V GR +     ++ GR+  +D ++ +N  S+   
Sbjct: 292 LAAASVCIALGLNLTEIAEGLSQLTPVKGRMQ----PTQLGRVRLIDDSYNANPVSVGAA 347

Query: 373 LKNIRTITSGRIIVVFGCG 391
           +  ++ I+  R +V+   G
Sbjct: 348 IAWLKEISENRCLVLGDLG 366


>gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
          Length = 450

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 155/374 (41%), Gaps = 44/374 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I EV+ D+R + AG +FVA+ G + DGH F   A+  GA A++VS           +  
Sbjct: 20  EITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAVTAGAGALLVSK---------RLLV 70

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV      I ++ G   +  G
Sbjct: 71  GAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGKVLYTAG 130

Query: 149 PTSTISSFAQDNRLTTP------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                 +F  +N +  P      +P Y    +      G  HV   A +  L +      
Sbjct: 131 ------NF--NNDIGVPLTLLRLTPEYDFAVIEL----GANHVGEIAYTTDLSRPE---- 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              +    NL   H++   +      AK  +F   LP    AII AD        +  HN
Sbjct: 175 ---SALVNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHN 230

Query: 263 AGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              RV     Q       +   V         T+           PLPG   + N L AA
Sbjct: 231 K--RVWRFAPQAAEDIDFYATDVQITPQATHFTLHSPFGTVAIELPLPGRHNIANGLAAA 288

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377
            L +++G D A V + L +L  VPGR   +      G++ +D  + +N  S+    + + 
Sbjct: 289 ALAMSVGADLAAVRQGLMQLQAVPGRLFPI--QLAAGKLLLDDTYNANVGSMTAAAQVLA 346

Query: 378 TITSGRIIVVFGCG 391
            +   R++VV   G
Sbjct: 347 EMPGYRVMVVGDMG 360


>gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 825

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 159/358 (44%), Gaps = 36/358 (10%)

Query: 27  ERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           E  I+ V +DSR +      +F A+  N+ DGH +IP+   +G    VV     + + +A
Sbjct: 21  EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYIPELYRRGVRCFVVEE---VPERAA 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  N   L V +TR+ L   A R        I+ +TG++GK+ V  ++ Q      L S
Sbjct: 78  ELFGNANFLCVSSTRQALQQLAQRHREAFDIPIVGITGSNGKTMVKEWLYQ------LLS 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            Q+  T +  S+  ++++  P  ++L  + S L   GV    +  S  G  Q   D IK 
Sbjct: 132 PQMVVTRSPRSY--NSQIGVPLSVWLLNSHSQL---GVFEAGI--SQKGEMQALHDIIKP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263
                TN+G  H +   T +     K+RLFE      +  ++Y ADDA    V+   +N 
Sbjct: 185 TIAVLTNIGSAHEENFSTPEEKCREKLRLFEG-----AEIMVYNADDALVTHVLNETNNG 239

Query: 264 GCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQVYNALV 317
           G  +  S       + + K+    +KQ    ++      G+   +  P   E  V N+++
Sbjct: 240 GQHLAWSTKSSDAAMFVTKI----DKQPTHTTIHYIYKGGEPASYSLPFIDEASVCNSII 295

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
            A +C+ +G+D+  + E + KL  V  R E V     G  +  D Y    NSL++ L 
Sbjct: 296 CATVCLHLGLDAHTIGERISKLEPVAMRLE-VKEGLNGCTLINDSYNSDINSLDIALN 352


>gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 453

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 158/373 (42%), Gaps = 44/373 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS           +  +
Sbjct: 24  IEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK---------RLLVD 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR  L   A+ +  +    ++A+TG+SGK+SV      I ++ G   +  G 
Sbjct: 75  EPQLLVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    P+ L   L   +      + + A+  G   +  D ++  +   
Sbjct: 134 -----NFNNDIGV----PLTL---LRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRA 260
            NL   H++   +      AK  +F   LP +  AI+ AD             K V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAQAKGEIFSG-LPVDGVAIVNADSNDFPHWQVMLNHKTVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A C +        F     V  +      T+     +   L PLPG   V NAL A  
Sbjct: 241 PQAACDI-------DFFA-SDVDVLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +++G     V   L +L  VPGR   +  +   G++ +D ++ +N  S+    + +  
Sbjct: 293 LAMSVGATLEAVKSGLSQLQAVPGRLFPIALSE--GKLLLDDSYNANVGSMTAAAQVLAE 350

Query: 379 ITSGRIIVVFGCG 391
           +   R++VV   G
Sbjct: 351 MPGYRVMVVGDMG 363


>gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 503

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 55/358 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G +++A+ G + DGH F   A+A+GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLLVDRL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV+NT   L+  A+ +       +LA+TG++GK+SV + +  I Q +G      G 
Sbjct: 76  VPQVVVENTELALARVAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDNADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +  +A              QT+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYTA--------LPADGVAVINADDAFG 230

Query: 254 ---KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              ++ +      G R+L  G Q    I  +++       Q T+     +     PLPG 
Sbjct: 231 MWFEQQLLAQPVQGRRILRYGLQISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPGR 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             V NAL A GL +  GI   ++   L + H V GR   +      G + +D ++ +N
Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346


>gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
 gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
          Length = 472

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 51/376 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           +S DSR +  G +FVAI G + DGH FI + +AQGA  +++  A++        R NTP 
Sbjct: 24  ISIDSRTLGKGDLFVAIQGQQHDGHDFIDRVLAQGAGGVMIDQAHA-------SRINTPR 76

Query: 92  -------ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++V D       L   R    +P  + A+TGT+GK+S       +C R     
Sbjct: 77  ATGRGARVVVKDTVVALGDLARHRRRSVNPR-VAAITGTNGKTSTKEMAAMVCGRR---- 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
           +++   +T  +F  +N +  P  +     L       V  + +  ++ G +  RL  I +
Sbjct: 132 YRV--LATTGNF--NNEIGLPLTL-----LRLEKGHQVAILEMGMNAPG-EIGRLAKICE 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G   N+G  H++  +       AK  L E L  K++ AI+ ADD     VMK A   
Sbjct: 182 PDMGVVLNVGAGHLEGVENIDGVARAKAELLEALTDKDT-AIVNADDM---RVMKMAQKV 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ-------VTISVEGKDFDFLFPLPGEFQVYNAL 316
             RV++ G + K      + A   ++Q       + +S   +      P  G F V NAL
Sbjct: 238 RGRVVTYGMRQK----ADITAASVRRQDGRVCFDLCLSATDEQVAVALPASGTFMVSNAL 293

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILK 374
            AA +   +G+ +  +   LE    VPGR     T +R G   VD  + +N  S++  L 
Sbjct: 294 AAAAIGAGLGLSAPEIKAGLENFSPVPGRMTI--TQTRAGFTLVDDTYNANPESMKAALA 351

Query: 375 NIRTIT-SGRIIVVFG 389
            +R +  +GR I++ G
Sbjct: 352 GLRELKGAGRGILIMG 367


>gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis M50/1]
          Length = 470

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 168/395 (42%), Gaps = 48/395 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++++I     DSR +++G++F+A+ G K DGH FIPQ   +GA A++  S   L D +  
Sbjct: 24  KKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFEKGALAVL--SEQELSDPAG- 80

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P + V++T   +   A+         ++ +TG+ GK+S    +  +  +      
Sbjct: 81  -----PYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTSTKEMIASVLSQ------ 129

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203
           +     T  +F  +N +  P  I+  +    ++    G++        H L +     I 
Sbjct: 130 KYNVLKTEGNF--NNEIGLPLTIFKIREQHEVAVLEMGISEF---GEMHRLAEMAYPDIC 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +I    TN+G  H++   T+     AK   FE L P E  A++  DD   K   K+  N 
Sbjct: 185 VI----TNIGLCHLENLLTRDGILKAKTESFEHLTP-EGTAVLNGDD--DKLCEKKMVNG 237

Query: 264 GCRVL-SVGYQG---------KFIHLKKVCAIH------NKQQVTISVEGKDFDFLFPLP 307
              V   +G +          K++  K+V A        +  +  I +  + F    P+ 
Sbjct: 238 KPVVFYGIGKEAKPAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIA 297

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VYNAL A  +   +G+    +   +E +  + GR   +    +GG   +D  + +N
Sbjct: 298 GEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRSNLI---HKGGMTIIDDCYNAN 354

Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI 401
            + M    ++     GR I V G  G+  + ++ +
Sbjct: 355 PVSMKASIDVLAAAPGRKIAVLGDMGELGENEQEL 389


>gi|257456336|ref|ZP_05621533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446422|gb|EEV21468.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 358

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 23/249 (9%)

Query: 3   LQDLIYKDFPELINQ--LSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           L D+  + + + I Q  +SI P+  R  +  ++ +S DSR ++ G  F A+ G   DG  
Sbjct: 10  LADMYVQHYAKSILQCLVSIEPIAVRGADVTVHSLSYDSREVREGAAFFALPGVHTDGSK 69

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           FI  A+A+G  A+ V     L  + A I      + V + R  ++  A+  + +  +++ 
Sbjct: 70  FIDAAVAKG--AVTVIHEKPLPAYQAHIC----YVQVPDVRAAMAAAAAAFFDEPSQDLI 123

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYL 170
            + VTGT GK+S   F+ Q+ + +G  +   G +ST+S        A     TTP  I +
Sbjct: 124 TIGVTGTEGKTSTVDFIWQLLRLAGKKA---GFSSTVSFSLGDEPVANPAHQTTPESITV 180

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            + L+ +   G  +  VEASSHGL     RL  ++  AG F N+ ++H+++H T + Y  
Sbjct: 181 QERLARMRDNGCEYAVVEASSHGLSPRTARLLHVRFDAGIFMNVTQEHLEFHGTFEQYRY 240

Query: 229 AKMRLFEEL 237
            K  LF  L
Sbjct: 241 DKANLFRAL 249


>gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 458

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 145/333 (43%), Gaps = 36/333 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSAT 85
           +R   +V +DSR I  G +FVA+ G + D H F+ QA+  GA  ++VS   + L D    
Sbjct: 23  DRVYTQVCTDSRQIVPGSLFVALKGERFDAHDFVEQALQLGAHGVIVSRMQHDLPDGD-- 80

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 IL+VD+T   L   A     K    ++AVTG++GK++    +  + +   L   
Sbjct: 81  ------ILLVDDTLTALQQLARYNRKKFSGPVVAVTGSNGKTTTKDMISALLETKYLV-- 132

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                 T+ +F  +N +  P  +     L    S G   V VE    GL +  +D +  I
Sbjct: 133 ----LKTLGNF--NNEIGLPLTL-----LGLDESHGA--VVVEMGMRGLGE--IDFLARI 177

Query: 206 ----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               AG  TN+G  H++   T +    AK  L    +P    A++  DD + +   K AH
Sbjct: 178 ACPTAGVITNIGETHLERLGTVENIARAKTELLPH-IPVGGYAVLNGDDPWQR---KYAH 233

Query: 262 NAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               +V+  G      ++   + C +      T+  +     F  P+PG   +YNAL A 
Sbjct: 234 LTRAKVIFYGMDHSNHVYADNIKCNMGAGASFTVIRDKIAKVFHLPVPGRHNIYNALAAI 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            + +  G+   + +E L+ + +   R + +  N
Sbjct: 294 TVGLQEGLSWEMCMEGLQNVVLSGMRLQIIDCN 326


>gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
 gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
          Length = 464

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 171/400 (42%), Gaps = 35/400 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R IQ G +FV ++G K DGH FI +AI  GA+A+ V   ++ +   A   ++
Sbjct: 26  IGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGAQAVFVQEGHNTKTIQAF--ND 83

Query: 90  TPILVVDNTRKFL---SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             ++ V +T K L   S++  +L+   P   + VTG+ GK+S    +      SG+ S +
Sbjct: 84  VWLIEVKDTLKALQAISVYYRKLF---PIPFIGVTGSVGKTSTKDLI------SGVLSGK 134

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 + +F  +N +  P  ++     +   +  ++ + +  SS G  +  +D +    
Sbjct: 135 FNVHKNLGNF--NNEIGLPLTLF-----NLEENHQISVLEMGMSSFGEIRDLVDMVHPEI 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  HI++  +++    AKM +      + +  ++  DD Y + + K   +    
Sbjct: 188 GVITNIGVSHIEHLGSKEGILKAKMEIASN-FKEGNYLLVNGDDEYLRCIHKDDKDYTVI 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              +     F  +            T+ + G+   F     G   VYNAL A    + IG
Sbjct: 247 FYGLSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAA----VWIG 302

Query: 327 IDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   +  E +++          R E + T  R   I   Y  + +S++  L  +  + S 
Sbjct: 303 LKYHMTFEEIQRGLDGFQPSKMRLEVI-TKGRMKIINDAYNASPDSMKAALDVLDHMKSN 361

Query: 383 RIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           R I V G     G   ++G R +    A    DI +   +
Sbjct: 362 RKIAVLGNMFEMGSFSEEGHRSVGAYFAKKNIDILVTVGE 401


>gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 470

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 157/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++VDNT   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVDNTLLSLQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLSNINGDFRQLTFG--------KSEAAEIYPLEIHAEAEGTSFVTNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+K+     R E++ T S G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKKMERSKSRLEWITTKS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMDS 366


>gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 503

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 55/358 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++ A+ G + DGH F   A+A+GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV NT   L+  A+ +       +LA+TG++GK+SV + +  I Q +G      G 
Sbjct: 76  VPQVVVKNTELALARIAASMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVE---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +  +A              QT+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERLCSLLGVA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230

Query: 254 ---KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              ++ ++     G R++  G Q G  I  +++       Q T+     +     PLPG 
Sbjct: 231 MWFEQQLQAQPVQGRRIVRYGLQIGADITARQLQLQAGATQFTLVTPQGEAQVALPLPGR 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             V NAL A GL +  GI   ++   L + H V GR   +      G + +D ++ +N
Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346


>gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 459

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 29/363 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSN 89
           N VS D+R ++ G I++AI G   DG+ F+ +AI +GAE  ++   AY+     A + + 
Sbjct: 27  NLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGAELCIIDKIAYT----EAEVLNK 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + I++V+NT+K L   A     K    ++ VTG++GK+S    +        L  F+   
Sbjct: 83  SAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKDLIAAALSEK-LKVFK--- 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T  +F  +N +  P  I+     +  ++  V  + +  S     Q   D  +   G  
Sbjct: 139 --TKGNF--NNEIGLPLMIF-----NLDNTYDVAVLEMGMSDLFEIQRLSDVARPDLGVI 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  HI+  +T++    AKM +      KE+  I+  DD Y   + K    A  R++ 
Sbjct: 190 TNIGISHIENLKTRENILKAKMEI-TTYFGKENLLIVNHDDQYLSTIDK----AEYRLIK 244

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 K I LK    +  +      +   +  F  P+PG+  + NAL+A      +G++
Sbjct: 245 ASISDDKNIDLKGESLVLKEDSCEFKL--NESKFYIPMPGKHNISNALLAIACARELGVE 302

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
             L+ +    +     R +     ++G  I  D Y  + +S++  ++ ++ +   R I V
Sbjct: 303 DQLINKGFLNIEATSMRLDI--EKNKGITIINDTYNASPDSMKAAIEVMKNLKGKRRIAV 360

Query: 388 FGC 390
            G 
Sbjct: 361 VGT 363


>gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
 gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
          Length = 468

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 32/293 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++D+R++Q G  F+A+ GN  DGH F+ +AI +GA  ++V   Y+L      + +N
Sbjct: 30  ITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNSEIQQLSNN 89

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            PIL V+NT K     A     +    +++VTG+ GK++    + ++    G        
Sbjct: 90  IPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELIAEVLATQG-------- 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
              + + A  N     + I +AK L  LS++   +  VE +  G  +  +  +  IA   
Sbjct: 142 -KVMKTEANYN-----NEIGVAKTLLQLSNEE-NYAVVEMAMRGPGE--IAELTHIANPT 192

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  HI    + +A   AK  L  E +   S AI+  D+    E   +  +   
Sbjct: 193 IGLITNVGTAHIGRLGSVEAIAEAKCELLRE-MSDSSIAILNYDNQRLIETAAKVWSG-- 249

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              + G +G  +  K +         TI+VEG   D   PLPG     N L A
Sbjct: 250 ETFTYGLEGGNLQGKLI------DSQTINVEG--VDLPLPLPGSHNASNYLAA 294


>gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Ruminococcus obeum A2-162]
          Length = 456

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 98/448 (21%), Positives = 185/448 (41%), Gaps = 64/448 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R+++ +++DSR I+   +FV IVG + D H FIP  +A+GA A +     S  D+    
Sbjct: 25  DREVSAITTDSRKIEKDCLFVPIVGERVDAHRFIPDVMAKGALATLSERELSDADY---- 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P + + ++ + +   A     +    ++ +TG+ GK+S    +  + +       +
Sbjct: 81  ----PYIQITSSLQAVKDIAEFYLQQLQLPVIGITGSVGKTSTKEVIASVLKE------K 130

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205
                T  +F  +N L  P  ++  +         +  + +  S  G +  RL  I K  
Sbjct: 131 YRTLKTQGNF--NNELGLPLTVFRLR-----EDDQIAVLEMGISDFG-EMTRLTRIAKPD 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  H++    +     AK  +F  +LP  S  I+   D      ++  H    
Sbjct: 183 TCVITNIGTCHLENLGDRDGVLKAKTEIFRSMLP--SGHIVLNGDDDKLATVEGYH---- 236

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---------KDFDFLFPLPGEFQVYNAL 316
                G +  F  L     ++  Q V+  ++G           FD L P PG   VYNAL
Sbjct: 237 -----GVKPVFFGLDAKRDVYADQIVSRGLKGVSCRIHMGEDAFDVLVPTPGIHMVYNAL 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-N 375
            AA +    G+    +   +E L  + GRF+ + T +    + VD  + +N + M    +
Sbjct: 292 AAAAVGRIYGLTIEEIKRGIESLETIRGRFKMIETEN---FLVVDDCYNANPMSMKASLD 348

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPI-------MGKIALDLA----DIAIVTDDNPRSED 424
           +     GR + + G  G+  + +  +         K  +D+     ++++   +  R  D
Sbjct: 349 VLHDGEGRRVAILGDMGELGENEISLHEEVGEHAAKCGIDVCICVGELSLHIAEAARKAD 408

Query: 425 P------EKIRAEIIHGIPGFIEKGNRI 446
           P      EK R  ++  + G++ KG+ I
Sbjct: 409 PDFEVHYEKDRESLLKNLGGYVRKGDTI 436


>gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR
           15-3]
          Length = 473

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 176/428 (41%), Gaps = 37/428 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI+ +  F +       + +S DSR +  G +F  I G   DGH F   A AQGA 
Sbjct: 6   DKQALISAMDGFTVGCLPEVFSGISIDSRTLVEGDVFFCIKGRHLDGHDFATHAYAQGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV+            ++  P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLVVAQ----NRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q  + +G     +   +               P+ LA+ +   S  G+  + +  
Sbjct: 122 KEALKQALETAGKVHANLSSLNNCWGV----------PLTLAR-MPIDSDYGIFEIGM-- 168

Query: 190 SSHGLDQHRLDGIKLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            +H  +   L  +KL+       T +   H+++ +  +   +AK  +FE L  K   A++
Sbjct: 169 -NHKDEIRPL--VKLVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEGL-DKNGIALL 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLF 304
            ADD +   ++K+A   G   +    Q  + +   K+VC + N   + + +  KD     
Sbjct: 225 NADDHFFSYLLKKAKQCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKI 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDY 362
             PG+  V N L     C A+G + A V+  L +  +  GR      +   G ++  +D 
Sbjct: 285 GAPGQHMVQNGLSVLAACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDE 344

Query: 363 AHTSNSLEM-----ILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIA 413
           ++ +N   M     +L        GR I + G     G   ++  R ++  I +  AD+ 
Sbjct: 345 SYNANPASMRAALDLLATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLV 404

Query: 414 IVTDDNPR 421
            +     R
Sbjct: 405 FLVGKEMR 412


>gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
 gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis]
 gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
          Length = 472

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 169/378 (44%), Gaps = 52/378 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR +  G IF  I  N+ DGH F  QA+A+GA A+V++    L D     + + P+
Sbjct: 29  VSIDSRTLVKGDIFFCI-KNRLDGHDFAAQALARGAGALVIAQ-NRLDDMK---QLSAPL 83

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VV +  K L   A     +    I+AVTG+ GK++    ++++ Q  G         + 
Sbjct: 84  IVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKTTTKEALKKVLQTVG------KVHAN 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSF 209
           I+SF          P+ LA+ +   S  G+  + +   +H  +   L  +KL+       
Sbjct: 138 IASFNN----CWGVPLTLAQ-MPLDSDYGIFEIGM---NHKDEIRSL--VKLVCPHVALI 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           T++   HI++ +  +   +AK  +FE  L  +  AI+ AD  +   ++++A      ++L
Sbjct: 188 THIAAGHIEFFKNLEEIADAKAEIFEG-LDNKGIAILNADSDFFSYLVQKAEQCNVKKIL 246

Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           S G      YQ      K++C + N   +T+   G+D       PG   V N+L     C
Sbjct: 247 SFGESDCADYQA-----KEICLLENHSCMTVRFSGRDVMIKIGAPGRHIVDNSLGVIAAC 301

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIY-VDYAHTSNSLEM-ILKN 375
            A+G D + +   L    +  GR    GT  R     G   + +D ++ +N + M    N
Sbjct: 302 DAVGADLSRIAPALSHFSLPQGR----GTRYRLSLPDGEEFHLIDESYNANPVSMRAALN 357

Query: 376 IRTI----TSGRIIVVFG 389
           + +I      GR I V G
Sbjct: 358 LLSIGPVGACGRRIAVLG 375


>gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
          Length = 462

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 161/374 (43%), Gaps = 42/374 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  V  DSR IQAG +FV +V  + DGH +I  AIA GA A + +S     D +  +
Sbjct: 25  DESLTGVCFDSRKIQAGQLFVPLVA-EHDGHDYIDNAIAGGASATLWAS-----DHADRL 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LVVD+        +     K    ++AVTG++GK++    +  I      S+F 
Sbjct: 79  PLTIPALVVDDLLTAFQQLSKYYLDKINPRVIAVTGSNGKTTTKDMIAAILS----STFN 134

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLI 205
           +  T T  +F  +N +  P          Y   Q  ++     +  G+D+  +LD +  +
Sbjct: 135 V--TKTQDNF--NNEIGLP----------YTILQMESNTEFLVAEMGMDRPGQLDFLSKL 180

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           A       T +G  HI++  T+    +AKM +   L  K     +Y  D     + +RA 
Sbjct: 181 ARPDVAVITMIGEAHIEFFGTRDKIADAKMEITHGL--KADGFFVY--DGDEPLLTERAQ 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVE-GKDFDFLFPLPGEFQVYNALV 317
                V+   +  K      V AI +K    Q    V    + DF  P+ G++ V NAL 
Sbjct: 237 QVDESVIKATFGRK--DSNDVFAIDSKDGQYQTQFHVNLWPEIDFTIPMIGDYNVNNALA 294

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A  +     I   ++ + L K  +   R +++ + S+G RI  D Y     + + +L   
Sbjct: 295 AISVGRIFRIHPQMMADKLAKFDLTKNRTQWL-SGSKGERILSDVYNSNPTAAKEVLTAF 353

Query: 377 R-TITSGRIIVVFG 389
           + T T GR I V G
Sbjct: 354 KNTTTKGRRIAVLG 367


>gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Marinobacter aquaeolei VT8]
 gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Marinobacter aquaeolei VT8]
          Length = 465

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 157/371 (42%), Gaps = 40/371 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E   + VS+D+R +  G +FVA+ G + DGH F+ QA+ QGA A VV +   + D +   
Sbjct: 27  ELWFDGVSTDTRSVGDGQLFVALRGERFDGHEFLGQALKQGAVAAVVDT--EITDVA--- 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LVV +T + L+  AS    +    ++A+TG+SGK++V      I          
Sbjct: 82  ---IPQLVVSDTVQALADLASGNRSESAARLVAITGSSGKTTVREMTGAILA-------G 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +GPT  ++    +N +  P  ++               + + AS  G   H +   +   
Sbjct: 132 MGPT-LVTEGNLNNHIGVPLTLF-----RLTPDHQFGAIELGASGLGEIAHTVSITRPQV 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN G+ H++   + Q    AK  + +  +P +   ++  DD    +   RA     R
Sbjct: 186 AILTNAGQAHLEGFGSYQNIVLAKGEIIDG-VPADGAVVLNRDDPAFDQWHARAGQR--R 242

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNAL 316
           VL V   G         A ++ + +  + +G +F  L P          LPGE  + NAL
Sbjct: 243 VLGVSRMG------HPAADYHAEAIMATDQGFEFLVLGPDSWRCHLVLGLPGEHNITNAL 296

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A   C  +G     V   L ++  V GR + +   S    I   Y     S++  L  +
Sbjct: 297 LALAACRELGATDQQVQSGLMQVEAVKGRLQVLKPASDLTLIDDSYNANPASMKAALDVL 356

Query: 377 RTITSGRIIVV 387
            +  + R+ V+
Sbjct: 357 ASYPAPRLAVL 367


>gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
 gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 452

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 164/368 (44%), Gaps = 32/368 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR ++ G +F+A+ G + DGH FI  AI  GA   +VS+  ++       + +   
Sbjct: 25  VSTDSRTLKPGDLFIALSGEQFDGHRFISAAIENGAVTAMVSADTAI----LPTQPDFGW 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +TR  L   A+    ++   ++AVTG++GK++V   +  I +              
Sbjct: 81  IKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVKEMIAAIFR-------------- 126

Query: 153 ISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              F  +N L T     + I + + L  L S+ V  V     +H  +   L   +L A +
Sbjct: 127 -CEFGLENVLATTGNLNNDIGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLS--RLAAPT 183

Query: 209 F---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN G  HI+Y  T +A   AK  +FE L  ++  AII ADD +++   + A N   
Sbjct: 184 IAVITNAGTAHIEYLGTTEAIARAKGEIFEGL-EEQGVAIINADDPHARLWRQLAGNR-- 240

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V+     G      +  A  +  +  + +     +    +PG   VYNAL AA    A 
Sbjct: 241 PVVDFSMNGTAAVSARQPAHPSGDRWLLQLPDDTIEITLQVPGRHNVYNALAAAAAATAA 300

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI ++ + E L     VPGR +     +R   I   Y    +S++  L N+     G+ I
Sbjct: 301 GISTSSIAEGLHSFRGVPGRLQKKTGLNRSVLIDDTYNANPDSMQAAL-NVLAEMPGKKI 359

Query: 386 VVFGCGGD 393
           ++ G  G+
Sbjct: 360 LIIGDMGE 367


>gi|171742536|ref|ZP_02918343.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283456378|ref|YP_003360942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278150|gb|EDT45811.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283103012|gb|ADB10118.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 515

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 191/426 (44%), Gaps = 50/426 (11%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQ 134
           S +DFS    +  P L+V++ RK LSL ++  YG  P+N L V G +G       A F Q
Sbjct: 81  SERDFSD--HTEVPGLIVNDARKALSLLSAAFYGM-PQNELTVIGITGTKGKTTTAYFTQ 137

Query: 135 QICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVS 186
            I     L+++  G  +  SS           ++ LTTP  +   + +   +  G+ ++ 
Sbjct: 138 AI-----LNAYSNGRCALFSSVDNCLDGHTYVESELTTPESLDAFRMMREAADNGMRYLV 192

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS     +R+ G+    G+F N+  DHI    H T + Y   K     +L       
Sbjct: 193 MEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYLYCK----RQLAYHARAF 248

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGK 298
           ++ AD  ++  + + A  AG  +     +         +  +   A H+    +I+  G 
Sbjct: 249 VLNADADHADLIREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSA--FSIAANGH 306

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFE-FVGTNSR 354
           D  +F   L G+F   NAL A  L    G+  DSA  +  +E +H VPGR E F GT+  
Sbjct: 307 DLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSA-AMHAMESVH-VPGRMELFTGTDGD 364

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              I VDYAH   S+  ++  +         RI +V G  G++   +R  + + A D   
Sbjct: 365 TVAI-VDYAHNYTSVRALIDFVEQRYGERKPRITLVAGSAGNKAFDRRQEIVEAAQDRIA 423

Query: 412 IAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKG---NRIEAIRTAIEMLNKQ---DVLVV 464
             + T ++  +E    I  E++ H     ++     +R++AI +A+E  +     DV+++
Sbjct: 424 RFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGLDVILI 483

Query: 465 AGKGHE 470
            GKGHE
Sbjct: 484 IGKGHE 489


>gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
 gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
          Length = 455

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 171/369 (46%), Gaps = 37/369 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIR 87
           K N VS+D+R I    IF+A+ G+  + + +I +A  +GA   +V    ++  D    ++
Sbjct: 25  KYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEASKKGANLCIVDEIKFNEND----LQ 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQ 146
            NT +++V NTRK L   A     K    ++ +TG++GK+S           + LSS F+
Sbjct: 81  KNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGSTGKTSTKDLTA-----AALSSKFK 135

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLDGIKL 204
           +  T    +F  +N +  P  I+    L       V  + +   S  H L +     I L
Sbjct: 136 VFKTQ--GNF--NNEIGLPLMIF---NLDNTYDIAVLEMGMSDFSEIHRLAKVARPDIAL 188

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           I    TN+G  HI+  +T++    AKM +  +   ++S  I+  ++    +++K   +  
Sbjct: 189 I----TNIGISHIENLKTRENILKAKMEI-TDFFNEDSILIVNNEN----DLLKDISSDD 239

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +V+S+G+ +G       +    N  + T+    K+  F  P+PG+  + N+L+A     
Sbjct: 240 YKVISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKFNIPVPGKHNILNSLLAIAAGR 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VD--YAHTSNSLEMILKNIRTIT 380
            + I+   + E ++ L V   R + V    +G +   VD  Y  + +S++  +  + TIT
Sbjct: 300 VLNIEYDKLKEGIKNLSVTSMRLDIV----KGKKFTIVDDCYNASPDSMKAAIDVMNTIT 355

Query: 381 SGRIIVVFG 389
             R I V G
Sbjct: 356 GKRKIAVLG 364


>gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
 gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
          Length = 472

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 167/374 (44%), Gaps = 43/374 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR +  G IF  I G+  DGH F  QA A+GA  ++V+  + L+D     + + P+
Sbjct: 29  VSIDSRALAEGDIFFCIKGHHLDGHDFALQAYARGAGVLIVAE-HRLRDME---KISAPL 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VV +  + L         +    I+A+TG+ GK++    ++Q+   +G         + 
Sbjct: 85  IVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKTTTKEALKQVLATAG---------NV 135

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSF 209
            ++ A  N      P+ LA+ +   S  G+  + +   +H  +   L  +KL+       
Sbjct: 136 HANLASLNN-CWGVPLTLAR-MPVESDYGIFEIGM---NHKDEIRPL--VKLVCPHVALI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           T++   H+ + +  +    AK  +FE  L +E  AI+ AD A+   ++++A   G  ++L
Sbjct: 189 THICAGHMGFFKDLEEIAEAKAEIFEG-LDEEGIAILNADSAFFSYLVQKAKQCGVKKIL 247

Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           S G      YQ + I L     + N   + + + G+D +     PG   V N+L     C
Sbjct: 248 SFGETENADYQARDIRL-----LTNHSSMIVRIGGQDREVQIGAPGRHIVQNSLGVIAAC 302

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIY-VDYAHTSNSLEM-----ILKN 375
            A+G+D   ++  L       GR   +  + S GG  Y +D ++ +N   M     +L  
Sbjct: 303 DAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDESYNANPASMRAALELLAT 362

Query: 376 IRTITSGRIIVVFG 389
                 GR I V G
Sbjct: 363 GPVGEKGRRIAVLG 376


>gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
 gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
          Length = 465

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/412 (20%), Positives = 164/412 (39%), Gaps = 62/412 (15%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    ++++  V+ DSR ++  ++F+AI G + + H FIP  I +GA  ++        D
Sbjct: 30  PENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFIPDTIKKGAMCVISHEDLGETD 89

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-----QQI 136
           F   +  +T   ++D  + +   F  ++ G        +TG+ GK+S    +     Q+ 
Sbjct: 90  FPYILVESTGQALLDTAKLYRDSFDIKVVG--------ITGSVGKTSTKEMIASVLSQKY 141

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGL 194
           C    L +F             +N    P  I+       ++    GV H          
Sbjct: 142 CVHKTLGNF-------------NNEWGLPITIFEMNEKHQVAVLEMGVNHFG-------- 180

Query: 195 DQHRLDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +  RL  +        TN+G  H+++ +T++     K ++ +++    S  ++  DD   
Sbjct: 181 EMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKTGGS-ILLNGDDDLL 239

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----------KDFDFL 303
           +++              G   +F  L K C  +     ++ + G          + FD +
Sbjct: 240 RDMGPVK----------GVDPEFFGLGKNCQFYATDVESLGLRGSSCTIHLPSGESFDCI 289

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG   V NAL    +   +G+  A +   +E L  +PGR   + T+     I +D  
Sbjct: 290 VPLPGAHMVQNALAGTAVGYQLGLTPAEIKAGIEGLPSIPGRNNIIQTDK---IIILDDC 346

Query: 364 HTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           + +N + M    ++  +  GR + V G  G+  +  + +  +      DI I
Sbjct: 347 YNANPISMQASLDVLNMAIGRKVAVLGDMGELGETGKELHYETGAHAGDIGI 398


>gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 462

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 171/397 (43%), Gaps = 28/397 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +  ++  I  VS+DSR+I A  +F+A+ G + DGH F+  AI  GA A++V        F
Sbjct: 17  LHGQDGVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTAIKNGAVALLVDHLLVDHPF 76

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           +A I     I+VVD T+K +    + +        +A+TG++GK+SV   +  I  +   
Sbjct: 77  AADI---AQIVVVD-TQKAMGKMGAFVRQTVAPICVALTGSNGKTSVKEMLATILSQHHQ 132

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             F  G      +F  +N +  P  +     LS     GV  +   A+  G   +    +
Sbjct: 133 VLFTAG------NF--NNEIGVPLTLL---RLSEGDEYGVFELG--ANHRGEIDYTSSLV 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---- 258
                   N+G  H++   + +    AK  +F  L P +  AII ADD ++  +++    
Sbjct: 180 LPQVALVNNVGNAHLEGFGSLEGVAQAKSEIFNHLTP-DGTAIINADDKFADFMLQQSQG 238

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R H    R ++V           V   +   + T++ +G+      PL G  QV NAL A
Sbjct: 239 RKHLRFSREMNV--DADVTATDIVADANGCYRFTLTFDGQQEVVQLPLAGLHQVSNALAA 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIR 377
           A +CIA+ I    + +    L  V GR +    +  G  + +D ++ +N   +    N  
Sbjct: 297 ASMCIALDISLYDIAQGFALLKPVKGRMQ---PHDLGRVLLIDDSYNANPTSVSAAINWL 353

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               G   +V G  G+      P+   I L + + AI
Sbjct: 354 QQRDGYRCLVLGDLGELGDNAAPLHASIGLQVKNAAI 390


>gi|309798583|ref|ZP_07692858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
 gi|308117819|gb|EFO55220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
          Length = 189

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 11/192 (5%)

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAH 364
           G F   NA+ A   C+ +G      LE ++K      VPGR E + T   G ++++DYAH
Sbjct: 3   GHFNQENAIAAGLACLRLGAS----LEDIKKGIASTRVPGRMEVL-TQKNGAKVFIDYAH 57

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSE 423
             +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I + +T D+P  E
Sbjct: 58  NGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYE 117

Query: 424 DPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKK 481
           DP  I  EI   I   +EK  +R +AI+ A+ + +++ D +++AGKG +   I+   ++ 
Sbjct: 118 DPMAIADEISSYIHHPVEKIADREQAIKAAMSVTDQELDAVIIAGKGADCYQIIQGKKED 177

Query: 482 MSVDCDIIREIL 493
              D  I    L
Sbjct: 178 YPGDAAIAERYL 189


>gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
 gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
          Length = 460

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 164/380 (43%), Gaps = 55/380 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +SSDSR I    +FVA+ G + DGH F   AI  GA A++V    +          +
Sbjct: 24  IQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLVERELAF---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142
            P L+V + +K +    + +  +     +A+TG++GK+SV   +        Q+   +G 
Sbjct: 75  VPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGN 134

Query: 143 SSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            + +IG P + +    +D              + Y SS    HV++              
Sbjct: 135 FNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSSLVRPHVAL-------------- 180

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                    N+G  H++   +Q     AK  ++  L      AII ADDA++ +VM R  
Sbjct: 181 -------VNNVGSAHLEGFGSQAGVAQAKSEIYNHL-QSGGTAIINADDAFA-DVM-RVK 230

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYN 314
               + LS   Q G       V A  +K       +  ++  G+  +   PL G  QV N
Sbjct: 231 AKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEM 371
           AL AA +CIA+G+    + E L +L  V GR +     ++ GRI  +D ++ +N  S+  
Sbjct: 291 ALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQ----PTQLGRIRLIDDSYNANPVSVGA 346

Query: 372 ILKNIRTITSGRIIVVFGCG 391
            +  ++ I+  R +V+   G
Sbjct: 347 AIAWLKEISENRCLVLGDLG 366


>gi|307111173|gb|EFN59408.1| hypothetical protein CHLNCDRAFT_137921 [Chlorella variabilis]
          Length = 873

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 143/348 (41%), Gaps = 51/348 (14%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN-LGRDHIDYHQ 221
           TTP  +++ KAL+  + +G +   VE     L   R D +      +TN           
Sbjct: 459 TTPDALHMQKALAGCADRGASVALVECDPASLGDGRADHVDFDVLVYTNSYAEKEAGAEG 518

Query: 222 TQQAYFNAKMRLFEELLP--KESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFI 277
             QA  +    LF  +    +   A+I  DD    E+ + A  AG  VL  S   +   I
Sbjct: 519 GSQACHDRVAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSADSRDADI 578

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           + +K  +   + +V ++        + PL G   V N L A    IA G+    ++  +E
Sbjct: 579 YAEKAKSSIWETEVLVNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIVAGIE 638

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            + ++PGR E +    +   + VD A T   L  +L  ++   S R+++VFGC       
Sbjct: 639 AVDIIPGRCEII-DEGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGC------- 690

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------------FIEKGNR 445
             P    +A    D   +T+D+P +  P  + A+++ G+P             F++  +R
Sbjct: 691 --PGTTSMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGTAYPFLQDPHR 748

Query: 446 I------------------------EAIRTAIEMLNKQDVLVVAGKGH 469
           +                        +AIR AI M   +DV+VVAGKGH
Sbjct: 749 VPHWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGH 796


>gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           denitrificans OS217]
 gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella denitrificans OS217]
          Length = 457

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 156/343 (45%), Gaps = 34/343 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+DSR I A  +FVA+ G + D H F   AI  GA+A++V    +L         +
Sbjct: 24  IANVSTDSRAIPAACLFVALKGERFDAHDFAATAIENGAKALLVERELAL---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V N++K +    + +        +A+TG++GK+SV   +  I  +     +  G 
Sbjct: 75  IPQLIVANSQKAMGEIGALVRDIVSPICVALTGSNGKTSVKEMLASILSQGHQVLYTAG- 133

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                +F  +N +  P + + L++A  Y    GV  +   A+  G   +    ++     
Sbjct: 134 -----NF--NNEIGVPLTLLRLSQADEY----GVFELG--ANHKGEIDYTSSLVRPRVAL 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H++   + +    AK  +F  L   +  A+I ADDA+  E+MK    A  + L
Sbjct: 181 VNNIGSAHLEGFGSIEGIAEAKSEIFNHL-SADGVAVINADDAFC-ELMKTKAKA-FKQL 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           S   +       +   ++         TI  +G+      PL G  QV NAL A+ +C+A
Sbjct: 238 SFSREANTNADIQATGLNMNAAGCYGFTIHYQGQQLAVQLPLAGIHQVSNALAASAMCLA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           +GI    ++  L +L  V GR +    ++ G  + +D ++ +N
Sbjct: 298 LGISLTDIVSGLARLAPVKGRMQ---PHTLGRLLVIDDSYNAN 337


>gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
 gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
          Length = 458

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 162/376 (43%), Gaps = 45/376 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++  V SDSR +Q G +F A+ G + DGH FI +  ++G  A+V              
Sbjct: 23  ETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEVASKGVAAVVAERTRMTGKM---- 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                ++VVDNTR+ L   A+R        I+AV G++GK+S    +  + ++      +
Sbjct: 79  -PECGVIVVDNTRQALGRLAARYRQDFQLPIIAVGGSNGKTSTKELLAGVLKK------R 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIY-LAKA-LSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +    + +SF  +N +  P+ +  L KA  + +   G  H    A    + Q +      
Sbjct: 132 LNTLWSEASF--NNDIGVPATLLRLEKANQAAVLEIGTNHPGELAPLVSMIQPKF----- 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  T++GR+H+++        + +  L  ELLP +    +  D  ++K++ +R     
Sbjct: 185 --GIITSIGREHLEFFGDVAGVADEEGWL-AELLPADGKLFLNGDSDWTKQIARRTR--- 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAG 320
             V+ VG+ G     +   A  + Q V   V+  D      +   L G  Q  NA  A  
Sbjct: 239 ATVVRVGF-GAGNDWRVTDAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQALNATFA-- 295

Query: 321 LCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LK 374
             +A+G +  L  +HLE+          R +    N   G   +D A+ +N+  M+  L 
Sbjct: 296 --LAVGAELGLTRDHLEQGLSDCKSAKMRLQLSNWN---GICVIDDAYNANADSMLAALN 350

Query: 375 NIRTITS-GRIIVVFG 389
            ++ +   GR + V G
Sbjct: 351 TLQEMPCVGRRVAVLG 366


>gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
          Length = 457

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 137/312 (43%), Gaps = 48/312 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E KI ++  DSR ++   +F+AI+G   DGH FI  A+  GA+A++V     + D+    
Sbjct: 23  EIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDSAVENGAKAVIVDR--QINDY---- 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQI-------CQ 138
            SN  ++ VD+T K L   A     K  +  I A+TG+ GK+S    +  +        +
Sbjct: 77  -SNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAITGSVGKTSTKDMIAAVLAQKYKTLK 135

Query: 139 RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            SG  + QIG P + +   ++D        +     +  L+      ++V          
Sbjct: 136 TSGNYNNQIGLPLTLLRLCSKDEFAVLEMGMSGFGEIELLAELARPQIAV---------- 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN+G  HI+   + +    AK  L +  L K   AI+  D+ Y++   
Sbjct: 186 -----------ITNVGPAHIEQLGSIENVAAAKKELLDS-LDKSGTAILNYDNEYTR--- 230

Query: 258 KRAHNAGCRVLSVGYQ-GKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           K A N   ++++ G+  G  + +   K     N+++  I  +GK   F    PG+  +YN
Sbjct: 231 KMAENFNSKLITFGFSAGADLQVIENKFNKDLNREEFKIIWQGKKLKFYLNKPGKHNIYN 290

Query: 315 ALVAAGLCIAIG 326
           AL A    IAIG
Sbjct: 291 ALAA----IAIG 298


>gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 473

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 167/378 (44%), Gaps = 28/378 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++VS     +  +AT+
Sbjct: 21  DAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVS-----RPPAATL 75

Query: 87  -RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +N  +L V +TR  L   A+    + P  ++AVTG++GK++V   +  I  ++     
Sbjct: 76  DMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQA----- 130

Query: 146 QIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGI 202
            +G  + +++    +N +  P  ++   A   L+    G+ H    A    + Q  +  I
Sbjct: 131 -VGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMI 189

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RA 260
                   N  R+H ++  + +A       +    LP +  A+   D A   E     +A
Sbjct: 190 N-------NAQREHQEFMVSVEAVAEEHAAVLAA-LPADGVAVYPRDAANGGEFAPVWQA 241

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                RVL  G +   +    V      Q++ +   G+ F    PL G     NAL A  
Sbjct: 242 AAGSRRVLDFGIEAGAV-TGTVVDTAEGQRIDVQAPGQRFAITLPLLGLHNARNALAATA 300

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
             +A G+   ++ + L     V GR +     + GG +  D Y    +S+   +  + T+
Sbjct: 301 CALAAGVAPEVIAQALGNFAPVKGRLQR-KQGTHGGLVIDDTYNANPDSMRAAIDALATL 359

Query: 380 TSGRIIVVFGCGGDRDQG 397
            + R +V+   G    QG
Sbjct: 360 PAPRWLVLGDMGEVGSQG 377


>gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Herminiimonas arsenicoxydans]
          Length = 455

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 160/372 (43%), Gaps = 31/372 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSRH+  G +FVA+ G + D H F+PQ   +   A+V       +   A +  N P 
Sbjct: 26  VSTDSRHVAVGNLFVALRGERFDAHAFLPQVAERKVAAVVA------EKIPAGL--NVPA 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +TR  L   AS    +    ++ VTG++GK++V   +  I   +       GP + 
Sbjct: 78  LIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAA------FGPDNY 131

Query: 153 ISSFAQ-DNRLTTPSPIYLAKAL--SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   + +   G+ H    A    + Q  +       G  
Sbjct: 132 LATRGNFNNDIGVPLTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTV-------GLV 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++ ++ +A       +    LP +  A+  ADDA++   + R++ A  + L+
Sbjct: 185 NNAQREHQEFMESVEAVAQENGAVLAS-LPADGVAVFPADDAFTP--LWRSYAAQRKTLT 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G+           A      ++++   + F       G   V NAL A    +AIGI  
Sbjct: 242 FGFSADADVRCTYAANVFGNDMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAP 301

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVV 387
             ++  L+    V GR +     S  G + +D  + +N  S+   +  +  + S RI+V+
Sbjct: 302 EAIVRGLQAFAPVSGRLQRKLAAS--GALVIDDTYNANPDSVRAAIDVLAQMASPRILVL 359

Query: 388 FGCGGDRDQGKR 399
              G   + G++
Sbjct: 360 GDMGEVGNDGRQ 371


>gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
 gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
          Length = 483

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 176/436 (40%), Gaps = 63/436 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I Q    P  W   +I  V +DSR +  G +FVA+ G + DGH F+   + +GA A +V
Sbjct: 1   MIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALV 60

Query: 74  SS------AYSLQDFS--------------ATIRSNTPILV-VDNTRKFLSLFASRLYGK 112
           S       A +L   +              AT+  +  +L+ VD+    L   A      
Sbjct: 61  SPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQM 120

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++ +TG+ GK+S    V  +C R  L + +       S  + ++ +T P     A 
Sbjct: 121 FTPTVIGITGSVGKTSTKEVVAAVCSRR-LRTLK-------SQRSFNSEVTLP-----AT 167

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L   +   V  + +   + G  +      +   G  TN+G  H++   + +A  NAK  
Sbjct: 168 LLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKAE 227

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQ-- 289
           L E L P +   I+ ADD     V   A     RVL+ GY     + L  V + H     
Sbjct: 228 LPESL-PADGWCILNADD---HRVAAMASRTAARVLTYGYAPNADVRLLDVVS-HGLYGI 282

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE------KLHVVP 343
           ++T+  EG+      PL G    Y AL A    + +G+D   + E L       +L +VP
Sbjct: 283 ELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLREPGEQLRLRIVP 342

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFG----CGGDRDQGK 398
           G+          G   +D  + +  L  I    +   T GR I V G     G    +G 
Sbjct: 343 GQH---------GTTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLGEMLELGAASVEGH 393

Query: 399 RPIMGKIALDLADIAI 414
           + + G  A  +AD+ +
Sbjct: 394 QQV-GAAAATMADVLV 408


>gi|306822449|ref|ZP_07455827.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553994|gb|EFM41903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 515

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 192/426 (45%), Gaps = 50/426 (11%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQ 134
           S +DFS    +  P L+V++ RK LSL ++  YG  P+N L V G +G       A F Q
Sbjct: 81  SERDFSD--HTEVPGLIVNDARKALSLLSAAFYGM-PQNELTVIGITGTKGKTTTAYFTQ 137

Query: 135 QICQRSGLSSFQIGPTSTISS--FAQD------NRLTTPSPIYLAKALSYLSSQGVTHVS 186
            I     L+++  G  +  SS     D      ++LTTP  +   + +   +  G+ ++ 
Sbjct: 138 AI-----LNAYSNGRCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLV 192

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS     +R+ G+    G+F N+  DHI    H T + Y   K     +L       
Sbjct: 193 MEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYLYCK----RQLAYHARAF 248

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGK 298
           ++ AD  ++  + + A  AG  +     +         +  +   A H+    +I+  G 
Sbjct: 249 VLNADADHADLIREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSA--FSIAANGH 306

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFE-FVGTNSR 354
           D  +F   L G+F   NAL A  L    G+  DSA  +  +E +H VPGR E F GT+  
Sbjct: 307 DLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSA-AMHAMESVH-VPGRMELFTGTDGD 364

Query: 355 GGRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              I VDYAH   S+  ++  +         RI +V G  G++   +R  + + A D   
Sbjct: 365 TVAI-VDYAHNYTSVRALIDFVEQRYCERKPRITLVAGSAGNKAFDRRQEIVEAAQDRIA 423

Query: 412 IAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKG---NRIEAIRTAIEMLNKQ---DVLVV 464
             + T ++  +E    I  E++ H     ++     +R++AI +A+E  +     DV+++
Sbjct: 424 RFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGLDVILI 483

Query: 465 AGKGHE 470
            GKGHE
Sbjct: 484 IGKGHE 489


>gi|325473281|gb|EGC76476.1| hypothetical protein HMPREF9353_02271 [Treponema denticola F0402]
          Length = 303

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 19/226 (8%)

Query: 23  MQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           +++  RK+   S D +  ++ G  F A+ G   DG  FI  AI  GA  I         D
Sbjct: 51  VEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDGKKFINSAIENGAVCIFYEG-----D 105

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139
            +         + V++ RK +S  ++ LY +      ++ VTGT GKSS  SF+ Q+   
Sbjct: 106 LNNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRTLGVIGVTGTEGKSSTVSFIFQLLNL 165

Query: 140 SGLSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            G  +   G  ST+      N +      TTP    +   L+ +   G  +  VEASSHG
Sbjct: 166 CGKKA---GFFSTVEYSIDGNVIPNPEHQTTPESNIVQLRLAQMRDSGCGYAVVEASSHG 222

Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           L     RL+ +   AG F N+ ++H+++H T + Y   K  LF  L
Sbjct: 223 LSPRTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYDKANLFRAL 268


>gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
 gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
          Length = 460

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 164/380 (43%), Gaps = 55/380 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +SSDSR I    +FVA+ G + DGH F   AI  GA A++V    +          +
Sbjct: 24  IQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLVERELAF---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142
            P L+V + +K +    + +  +     +A+TG++GK+SV   +        Q+   +G 
Sbjct: 75  VPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGN 134

Query: 143 SSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            + +IG P + +    +D              + Y SS    HV++              
Sbjct: 135 FNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSSLVRPHVAL-------------- 180

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                    N+G  H++   +Q     AK  ++  L      AII ADDA++ +VM R  
Sbjct: 181 -------VNNVGSAHLEGFGSQAGVAQAKSEIYNHL-QSGGTAIINADDAFA-DVM-RVK 230

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYN 314
               + LS   Q G       V A  +K       +  ++  G+  +   PL G  QV N
Sbjct: 231 AKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEM 371
           AL AA +CIA+G+    + E L +L  V GR +     ++ GR+  +D ++ +N  S+  
Sbjct: 291 ALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQ----PTQLGRVRLIDDSYNANPVSVGA 346

Query: 372 ILKNIRTITSGRIIVVFGCG 391
            +  ++ I+  R +V+   G
Sbjct: 347 AIAWLKEISENRCLVLGDLG 366


>gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 454

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/479 (21%), Positives = 198/479 (41%), Gaps = 78/479 (16%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  K+     N   + P +  ++++  + +DSR  +AG +FV I G + D H FI Q
Sbjct: 1   MKNLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            + +   A +       + F   +  ++ I V D    +L      + G        +TG
Sbjct: 61  VMEKAVLATLSEKDLGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVG--------ITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T  +F  +N L  P  I+  +         +
Sbjct: 113 SVGKTSTKEVIASVLAQ------KYNTLKTQGNF--NNELGLPLTIFRLR-----DEHEM 159

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + +  S  G + HRL  I +      TN+G  H+++ +++     AK  +F+  L  +
Sbjct: 160 AVLEMGISDFG-EMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFD-YLQSD 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGKFIH------LKKV-CAIHNKQQV 291
              I+  DD    +++      G + +  G   +QG +        LK + C IH  ++ 
Sbjct: 218 DHIILNGDD---DKLVTVQETKGIKPVFFGVENHQGIWADKIKPEGLKGISCCIHAGEE- 273

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                   F  L P+PG+  VYNAL A  + +  G+    + + +E L  V GRF  +  
Sbjct: 274 -------SFSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEA 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI--------- 401
            +      +D  + +N + M    ++ T   GR + + G  G+    +R +         
Sbjct: 327 PN---YTVIDDCYNANPISMKASLDVLTDALGRKVAILGDMGELGADERKMHKEVGKHAA 383

Query: 402 ---------MGKIALDLADIAIVTDDNPRSE-----DPEKIRAEIIHGIPGFIEKGNRI 446
                    +G+++ D+AD A   + N +++     D E +  E    +P  +EKG+ +
Sbjct: 384 EKEIDVLLCVGELSKDMADAA--GEVNSKTQVRHFADKEALMKE----LPELLEKGDTV 436


>gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
 gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
          Length = 454

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/479 (21%), Positives = 198/479 (41%), Gaps = 78/479 (16%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  K+     N   + P +  ++++  + +DSR  +AG +FV I G + D H FI Q
Sbjct: 1   MKNLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            + +   A +       + F   +  ++ I V D    +L      + G        +TG
Sbjct: 61  VMEKAVLATLSEKDLGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVG--------ITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T  +F  +N L  P  I+  +         +
Sbjct: 113 SVGKTSTKEVIASVLAQ------KYNTLKTQGNF--NNELGLPLTIFRLR-----DEHEM 159

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + +  S  G + HRL  I +      TN+G  H+++ +++     AK  +F+  L  +
Sbjct: 160 AVLEMGISDFG-EMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFD-YLQSD 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGKFIH------LKKV-CAIHNKQQV 291
              I+  DD    +++      G + +  G   +QG +        LK + C IH  ++ 
Sbjct: 218 DHIILNGDD---DKLVTVQETKGIKPVFFGVENHQGIWADEIKPEGLKGISCCIHAGEE- 273

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                   F  L P+PG+  VYNAL A  + +  G+    + + +E L  V GRF  +  
Sbjct: 274 -------SFSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEA 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI--------- 401
            +      +D  + +N + M    ++ T   GR + + G  G+    +R +         
Sbjct: 327 PN---YTVIDDCYNANPISMKASLDVLTDALGRKVAILGDMGELGADERKMHKEVGKHAA 383

Query: 402 ---------MGKIALDLADIAIVTDDNPRSE-----DPEKIRAEIIHGIPGFIEKGNRI 446
                    +G+++ D+AD A   + N +++     D E +  E    +P  +EKG+ +
Sbjct: 384 EKEIDVLLCVGELSKDMADAA--GEVNSKTQVRHFADKEALMKE----LPELLEKGDTV 436


>gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 472

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 38/374 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI+ +  F +       + VS DSR + AG +F  I G+  DGH F   A AQGA 
Sbjct: 6   DKQALISAMDGFTVGCLPEIFSGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHAYAQGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV+            +   P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLVVAQ----NRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q  +  G     +   +               P+ LA+ +   S  G+  + +  
Sbjct: 122 KEALKQALETVGKVHANLASLNNCWGV----------PLTLAR-MPIDSDYGIFEIGM-- 168

Query: 190 SSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            +H  +   L  +KL+       T +   H+++ +  +   +AK  +FE  L K   A++
Sbjct: 169 -NHKNEIRPL--VKLVCPHVVLITRIAAGHMEFFKDLEEVADAKAEIFEG-LDKNGIALL 224

Query: 247 YADDAYSKEVMKRAHNAGCRVL-------SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            ADD +   ++K+A   G + +       S  YQ K +HL + C+      + +  + KD
Sbjct: 225 NADDHFFSYLLKKAKQCGVKEIRSFGRSNSADYQVKEVHLLENCSC-----MVVHFDQKD 279

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRI 358
                  PG+  V N L     C  +  D A V   L +  +  GR      + S GG  
Sbjct: 280 MMIKIGAPGQHMVQNGLSVLAACDTVCADLAHVTLALGRFSLQKGRGALYKLSLSNGGMF 339

Query: 359 Y-VDYAHTSNSLEM 371
           + +D ++ +N + M
Sbjct: 340 HLIDESYNANPVSM 353


>gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
 gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
          Length = 454

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 40/374 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E  +  VS+DSR I    +F+A+ G + D H F  Q +  GA A++V     +      
Sbjct: 23  QELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQVVDAGAAALLVDHQLDI------ 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              N P ++VD+TR  +   A+ +  +   +++ +TG+SGK+SV      I  + G + +
Sbjct: 77  ---NCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTGSSGKTSVKEMTASILVQRGKTLY 133

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G          +N +  P  ++    L++     V  + + A+     ++  + +K  
Sbjct: 134 TAGNL--------NNDIGVPLTLF---RLTHDHQFAV--IEMGANHPHEIEYTTNIVKPE 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A    NL   H++   + +    AK  +++  LP E  AI+  D    K   K       
Sbjct: 181 AVLVNNLFGAHLEGFGSPEGVAKAKGEIYQG-LPDEGTAIVNLDSYSDKWQFKPRQTVWR 239

Query: 266 RVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             L+      F    I +K++         T+       D   PLPG   + N L A+ L
Sbjct: 240 YSLTQQEHADFYPSNIQVKQLTT-----DFTLHTPVGQVDITLPLPGMHNIANVLAASAL 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMI--LKNIR 377
            I++G     + + L     VPGR   V  G N    ++ +D  + +N   MI  +  + 
Sbjct: 295 SISVGATLEEISQGLASTKAVPGRLYPVRLGDN----KVVIDDTYNANDGSMIAAINVLA 350

Query: 378 TITSGRIIVVFGCG 391
           T+   RI+VV   G
Sbjct: 351 TLPGYRILVVGDMG 364


>gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 461

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 164/371 (44%), Gaps = 41/371 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85
           K+  +S+DSR ++   +F+ + G K DG  F+  AI +GA A++ +   +   L+DFS  
Sbjct: 25  KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAVITARLDNVECLKDFSVN 84

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 ++ V+ T + L   AS    K     +AVTG+SGK++    + QI  +     +
Sbjct: 85  ------VIYVNETLEALHKIASYYIKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KY 134

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-K 203
           ++  T    +F  +N +  P  I+  +    ++        VE   +G  +  RL  I K
Sbjct: 135 KVLKTE--GNF--NNEIGLPLTIFNLEDTHQIA-------VVEMGMNGFGEIRRLKNIVK 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTN+G  HI+   +++    AK  L E+   +E+  ++ ADD     + K     
Sbjct: 184 PQVAVFTNIGVAHIEKLGSRENILKAKTELIED-FKEENVIVLNADDDM---LSKIPLQY 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +    G +   I   K C I   +   + T+  +  + +    +PG   VYN+L A  
Sbjct: 240 SSKYYRYGIKSGEI---KACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAIC 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           + +  GI+   + E L+     PG+        +G    +D  + +N  S++  L  +R 
Sbjct: 297 VGLEFGINVEDMAEALKDFQ--PGKMRL-NIIEKGDIKIIDDVYNANPDSMKAALSVLRD 353

Query: 379 ITSGRIIVVFG 389
           + + R I V G
Sbjct: 354 LPAKRKIAVLG 364


>gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
 gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
          Length = 457

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 168/367 (45%), Gaps = 31/367 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K N +S+D+R I    IFVA+ G+  + + +I  A  +G+   +V      +D  + +  
Sbjct: 25  KYNNISTDTRKITKDSIFVALKGDNFNANDYIVDASVKGSNLCIVDEI-KFKD--SDLNE 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           NT I++V+NTRK L   A     K    ++ +TG++GK+S              S +++ 
Sbjct: 82  NTSIILVENTRKALLDLAELYRSKLDIKVIGITGSTGKTSTKDLTAAALS----SKYKVF 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIA 206
            T    +F  +N +  P  I+     S  +S  V    +E      D+ HRL  + K   
Sbjct: 138 KTQ--GNF--NNEVGLPLMIF-----SLDNSYDV--AVLEMGMSNFDEIHRLAKVAKPDI 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI+  +T++    AKM +  +   ++S  I+  ++    +++K   +   +
Sbjct: 187 ALITNIGISHIENLKTRENILKAKMEI-TDFFNEDSVLIVNKEN----DLLKTVKSNDYK 241

Query: 267 VLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           ++S+G++    +  + +    N  + T+  + +   F  P+PG+  + N+++A      +
Sbjct: 242 LMSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKERFNIPVPGKHNILNSMLAIVAGRTL 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGR 383
           GI+   + + ++ L V   R + V    + G   VD  Y  + +S+   +  I TI   R
Sbjct: 302 GIEYDKLKQGIKNLSVTSMRLDIV---KKDGFTIVDDSYNASPDSMRAAIDVINTIKGNR 358

Query: 384 IIVVFGC 390
            I + G 
Sbjct: 359 KIAILGT 365


>gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 461

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 193/456 (42%), Gaps = 42/456 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR ++ G +FV +VG K DGH FI  A   GA A +   A   +D    +    P+
Sbjct: 28  VSTDSRSLKHGDLFVPLVGAKFDGHDFIKNAFEAGASATL--CAEDKRDRVLNLTLEKPV 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + VD+T+  L   A           +A+TG+ GK++    +  +  R     +++     
Sbjct: 86  IFVDDTQNALLRLAGFYRSFFSIPFVAITGSVGKTTTKEMIAAVLTR----RYRV----- 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
                  N     + I L   L  L    V  V +  S  G +  RL  I K      TN
Sbjct: 137 -----LKNEGNFNNEIGLPLTLFRLEDHQVGVVEMGMSGFG-EISRLSAIVKPHVAVITN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  HI+   +++    AK+ + E  L K+   ++ AD   S E+  +      R +  G
Sbjct: 191 IGVSHIEKLGSRENIARAKLEIIEP-LSKDDLVVLNAD---SPELYAKRGTLTPRTVYFG 246

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +   I    + ++  +  V   V G   +F    PL G   VYNAL A    IA+G++ 
Sbjct: 247 IEKGDIRATDIVSM-GRDGVIFKVTGDIPEFSVEIPLAGTHNVYNALAA----IAVGLEF 301

Query: 330 ALVLEHLEK--LHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSG-RI 384
            L ++ + +  + + P +       +  G + +D  Y  + +S++  L  +R +  G R 
Sbjct: 302 GLSIDEIRRGLMELKPTKMRLEFKKTPFGAVVIDDCYNASPDSMKAALNVLRELGEGRRK 361

Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           + + G     GD        +G+ A    DI I   ++  +ED  K   E   G P FI 
Sbjct: 362 VAILGDMLELGDYAVKAHEEIGRYAAGKTDILICIGNH--AEDLAKGATEAGLG-PRFIH 418

Query: 442 K-GNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
                 EAI    E++   D+++V A +G +   IV
Sbjct: 419 TFSTNKEAIDRLGELVEDCDIILVKASRGMKLEEIV 454


>gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 455

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 142/322 (44%), Gaps = 54/322 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ D R +Q G  FVA VG + DGH F+ +A  +GA   VV+     +D    +   
Sbjct: 27  ITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGASVAVVT-----EDVKTAL--- 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V N  + +   A     +    ++ +TG++GK++    V  +     LS+  IGP
Sbjct: 79  GPCIRVQNALQAVQALARWERDQFEGPVVGITGSNGKTTTKEMVAAV-----LSA--IGP 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
               +S  Q+N L  P  I L +  S+ +      + +E    GL Q  ++ +  IA   
Sbjct: 132 -CVYTSANQNNELGLPLTI-LQRDASHRA------MVLEMGMRGLGQ--IEELCTIARPN 181

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  T++G +HI+   +Q+    AK  L   L PK+  A++  DD + + +    H    
Sbjct: 182 IGVITHIGYNHIELLGSQENIALAKTELIASL-PKDGMAVLNGDDPWLRRMQ---HRTTA 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL 316
           R+L  G       + + C I     V  S EG  F+   P         L G+  V NAL
Sbjct: 238 RILWYG-------MSEGCDIR-ATSVAWSQEGMSFEVDTPHGTATMRIRLLGQHNVMNAL 289

Query: 317 VAAGLCIAIGIDSALVLEHLEK 338
            A    IA+G    L LE +EK
Sbjct: 290 AA----IAVGQTLGLSLEDIEK 307


>gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
 gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
          Length = 482

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 159/380 (41%), Gaps = 32/380 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSAT 85
           +  +  V++DSR +Q G +FVA++G + D H F+   +A+GA A++VS    ++ D    
Sbjct: 27  DAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDL--- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             S   +L V +TR  L   A+    + P  ++AVTG++GK++V   +  +         
Sbjct: 84  --SGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFA------- 134

Query: 146 QIGPTSTISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                    +  +D RL T     + I L   L  L++Q    V     +H  +   L  
Sbjct: 135 --------CAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETEVLAT 186

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MK 258
           I +       N  R+H ++  + +A       +    LP +  A+   D A   E   + 
Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAA-LPADGVAVFPRDAANGGEYAPLW 245

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           RA     RVL  G +G  +    V    + Q V +   G  F F  PL G     NAL A
Sbjct: 246 RAAAGTRRVLDFGIEGGAVS-ATVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAA 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
               +A GI   ++ + L     V GR +       GG +  D Y    +S+   +  + 
Sbjct: 305 TACALAAGIAPEVIAQALSAFAPVKGRLQR-KPGVHGGLVVDDTYNANPDSVRAAIDALA 363

Query: 378 TITSGRIIVVFGCGGDRDQG 397
           T+ + R +V+   G    QG
Sbjct: 364 TLPAPRWLVLGDMGEVGTQG 383


>gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
 gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
          Length = 452

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAIV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  N  K L   A          I+++TG+ GK+SV   +  +     +       
Sbjct: 73  IPQIVCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 127 ------FTQGNLNN-----YLGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L + L P++   I+  DD            K++ 
Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+          A  N   V I +  +++D+  P  G+  ++N+++
Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAVKIRIFSQEYDYQLPNIGKHNLFNSVL 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +A+G++    L++ + +    GRF     N +   +   Y  ++ +++  ++++ 
Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLD 344

Query: 378 TITSGRIIVV 387
                R+I +
Sbjct: 345 EFDGKRVIAI 354


>gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
 gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
          Length = 455

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 170/367 (46%), Gaps = 33/367 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K N VS+D+R I    IFVA+ G+  + + +I +A  +GA   +V     ++     ++ 
Sbjct: 25  KYNSVSTDTRKINENSIFVALKGDNFNANNYIVEASKKGANLCIVDE---IKFNEGDLQE 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           NT +++V+NTRK L   A     K    I+ +TG++GK+S     + +   +  S F++ 
Sbjct: 82  NTSVILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTST----KDLTAAALGSKFKVF 137

Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T    +F  +N +  P  I+ L   L   +   G++  S     H L +     I LI 
Sbjct: 138 KTQ--GNF--NNEIGLPLMIFNLDNTLDVAVLEMGMSDFS---EIHRLAKVARPDIALI- 189

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI+  +T++    AKM +  +   K+S  I+  ++   K++    +N    
Sbjct: 190 ---TNIGISHIENLKTRENILKAKMEI-TDFFNKDSILIVNNENDLLKDISSNDYN---- 241

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           ++++G+ +G       +    N  + T+    ++  F  P+PG+  + N+L+A      +
Sbjct: 242 IINIGFNEGVAYKATDILTDENHIEFTVCHNDENEKFNIPVPGKHNILNSLLAIAAGRVL 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVD--YAHTSNSLEMILKNIRTITSG 382
            I+   + + ++ L V   R + V    +G +   VD  Y  + +S+   +  + TI   
Sbjct: 302 NIEYDKLKDGIKNLSVTSMRLDIV----KGEKFTIVDDCYNASPDSMRAAIDVMNTIKGK 357

Query: 383 RIIVVFG 389
           R I V G
Sbjct: 358 RKIAVLG 364


>gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
 gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
          Length = 456

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 104/473 (21%), Positives = 200/473 (42%), Gaps = 66/473 (13%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  ++ N +        +++I+ +++DSR I+   +FV IVG + D H FIP 
Sbjct: 1   MKNLTLRNLTKVCNGIWHGDNALLDQEISAITTDSRKIEKDCLFVPIVGERVDAHRFIPD 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            + +GA A +        D+ A I+ +  +  V +  +F   +  +L  + P  ++ +TG
Sbjct: 61  VMTKGALATLSERELPEADY-AYIQVDASLQAVKDIAEF---YLEQL--QIP--VVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  + +       +     T  +F  +N L  P  ++  +         +
Sbjct: 113 SVGKTSTKEVIASVLKE------KYRTLKTQGNF--NNELGLPLTVFRLR-----DEDQI 159

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + +  S  G +  RL  I K      TN+G  H++    +     AK  +F+ + P  
Sbjct: 160 AVLEMGISDFG-EMARLTKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQSMKPN- 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---------QGKFIHLKKV-CAIHNKQQV 291
              ++  DD   K +  R +N G + +  G          Q +   LK V C IH  +  
Sbjct: 218 GHIVLNGDD--DKLITVREYN-GVKPVFFGLNSERDVYADQIESKGLKGVACRIHLGEDA 274

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                   FD L P PG   VYNAL AA +    G+    +   +E L  + GRF+ + T
Sbjct: 275 --------FDVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIRRGIESLETIRGRFKMIET 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     + VD  + +N + M    ++     GR + + G  G+  + +  +   + +  A
Sbjct: 327 DK---FLVVDDCYNANPMSMKASLDVLHDGEGRRVAILGDMGELGEDEAALHEGVGIHAA 383

Query: 411 -----------DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRI 446
                      D+A+   +  R  +P      EK R  ++  +  +++KG+ I
Sbjct: 384 ICGIDACVCVGDLAVHIAEAARKANPDFPVYYEKTRESLLEHLNDYVQKGDTI 436


>gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
 gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
          Length = 450

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV +VG + DGH FI QAI  GA A    S +SL    A    
Sbjct: 21  KITNVEFDSRKITEGSLFVPLVGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141
           + P++ V +  K +   A+    K    ++A+TG++GK+       SV S   +  +  G
Sbjct: 74  DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +     
Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAEGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 345 TKGRRIAVLA 354


>gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis
           ATCC 367]
 gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis ATCC 367]
          Length = 461

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 163/373 (43%), Gaps = 37/373 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW    +  V+ DSRH+Q G +F+ + G + DGH FI  AI  GA A + +     +D  
Sbjct: 20  QWGSVSVTSVAFDSRHLQPGGLFIPLTG-EHDGHQFIQSAIDHGAVATLWA-----RDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A+  ++ P++ VD++ K L   A     K    ++AVTG++GK++    +  +       
Sbjct: 73  ASAPADFPVIQVDDSLKALQTLAQYYLSKINPRVVAVTGSNGKTTTKDMIAAVL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           S Q   T T ++F  +N +  P        ++ LS +  T + V     G+D+  +LD +
Sbjct: 127 STQFNVTKTHANF--NNEIGVP--------MTVLSMEPNTEMLV--VEMGMDRPGQLDFL 174

Query: 203 KLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             +        T +G  HI++  T+    +AKM +    L  +   +   D+   +E   
Sbjct: 175 SQLVSPDLALITMIGEAHIEFFGTRDKIADAKMEITHG-LSDDGVFVFNGDEPLLRE--- 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           RA     R ++ G QG                   + +  +  F  P+ G + V NAL A
Sbjct: 231 RATELTQRQVTFGQQGTDDLFATDVTGTPTTTSFTTNQWPEVTFTIPMIGTYNVNNALAA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLEMILKNI 376
             + +   I      + L  + +   R E+V T++ G  I  D   ++ + + E++    
Sbjct: 291 LSVAMLYRIRPESAKQALATVSLTENRAEWV-TSASGAAILSDVYNSNPTAAKEVLTAFS 349

Query: 377 RTITSGRIIVVFG 389
           +T  +G+  VV G
Sbjct: 350 QTPVTGQRYVVLG 362


>gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
 gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
          Length = 478

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 165/371 (44%), Gaps = 26/371 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++VS     +  +AT+
Sbjct: 26  DAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVS-----RPPAATL 80

Query: 87  -RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +N  +L V +TR  L   A+    + P  ++AVTG++GK++V   +  I  ++     
Sbjct: 81  DMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDA 140

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203
           ++   +T  +F  +N +  P  ++   A   L+    G+ H    A    + Q  +  I 
Sbjct: 141 RL---ATAGNF--NNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMIN 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261
                  N  R+H ++  + +A       +    LP    A+   D A   E  +  +A 
Sbjct: 196 -------NAQREHQEFMVSVEAVAEEHAAVLAA-LPANGVAVYPRDAANGGEYARVWKAA 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               RVL  G     +    V    + Q++ +   G+ F    PL G     NAL A   
Sbjct: 248 AGSRRVLDFGMDAGAV-TGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALAATAC 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +A G+   ++ + L     V GR +     + GG +  D Y    +S+   +  + T+ 
Sbjct: 307 ALAAGVAPEVIAQALGNFAPVKGRLQR-KQGTHGGLVIDDTYNANPDSMRAAIDALVTLP 365

Query: 381 SGRIIVVFGCG 391
           + R +V+   G
Sbjct: 366 APRWLVLGDMG 376


>gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 457

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 159/379 (41%), Gaps = 56/379 (14%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  V  D+R I+ G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 15  SIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATF------ 68

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            Q       ++ P+++V++T   L   A +   +    ++A+TG++GK++    +  I +
Sbjct: 69  WQKNVPNPPTDFPVILVEDTLLALQELAMKYMQEVRPKVIAITGSNGKTTTKDIMAAIVE 128

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            S       G  +  IG   TI +  +D  +              +   G+ H       
Sbjct: 129 TSYKVHYTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH------- 168

Query: 192 HGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
               +H ++ +  IA       TN+G  HI+Y  ++Q    AK+ +   L P  S  +IY
Sbjct: 169 ----RHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNP--SGILIY 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFL 303
               Y + ++    +   R L+ G   + +   L+    IH + + T  V     D +  
Sbjct: 223 ---PYEETLLLSQIDGDFRQLTFGKSTESEIYPLE----IHAEAEGTSFVTNWEPDLEIF 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T   G RI  D Y
Sbjct: 276 VPIIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNMERSKSRLEWL-TAKNGARILNDAY 334

Query: 363 AHTSNSLEMILKNIRTITS 381
             +  +L+ +LK    + S
Sbjct: 335 NSSPTALQTVLKTFMHMDS 353


>gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
 gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
          Length = 429

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 160/377 (42%), Gaps = 57/377 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ DL+   FPE                I +V  DSR ++ G +F AI G    G+  +
Sbjct: 1   MKIIDLLRDYFPE--------KKILESMDIKDVCMDSREVKKGSLFFAIKG----GNNHV 48

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI  GA  ++    Y  +D    I+    I   D T  F+   A      +   ++A+
Sbjct: 49  EEAIKNGAVLVI----YDRKDL--LIQDENTIFTED-TVNFMQKLARDYRKSNQTKVVAI 101

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +     F+   T        +N +  P  I        L++Q
Sbjct: 102 TGSNGKTTTKDIIYSVLSQR----FRTKKTQG----NHNNHIGLPYTI--------LNAQ 145

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               V V       D   +D +  IA    G  TN+G  H++Y + ++  F AK  L E 
Sbjct: 146 PEDEVLVLEMGMS-DFGEIDLLCSIALPDYGIITNIGESHLEYLKNKENVFKAKGELLEY 204

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +  K +  I++ DD Y K++           + VGY G     K    I N +     + 
Sbjct: 205 VHSKNT--IVFGDDYYLKDI---------HGIKVGY-GDENTFKISEFIENDKGAEFKLA 252

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK +    P+ GE  V NA  A  L + +G+  + + + L+ + + P RF+ +    +G 
Sbjct: 253 GKTYR--IPINGEHNVINASFAVVLGLEMGLSLSEIEKGLQGVELTPMRFQKI---EKGK 307

Query: 357 RIYVDYAHTSNSLEMIL 373
           ++Y++ A+ +N   M L
Sbjct: 308 KLYINDAYNANPTSMKL 324


>gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112]
 gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
          Length = 452

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAIV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQDL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +       
Sbjct: 73  IPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 127 ------FTQGNLNN-----YLGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L + L P++   I+  DD            K++ 
Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+             N   V I +  +++D+  P  G+  ++N+++
Sbjct: 235 CSMTNPKADILVLDYR----------VTSNSFAVKIRIFDQEYDYQLPNIGKHNLFNSVL 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +A+G++    L++ + +    GRF     N +   +   Y  ++ +++  ++++ 
Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLD 344

Query: 378 TITSGRIIVV 387
                R+I +
Sbjct: 345 EFDGKRVIAI 354


>gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 465

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 118/237 (49%), Gaps = 29/237 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S+DSR+I+   +F+A+ G K DGH F+  AI +GA+ ++VS   +L+D +  I+ 
Sbjct: 26  KVDSISTDSRNIKKDDVFIALKGEKFDGHEFVKDAILKGAKGVIVSRDVNLEDKAFIIK- 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                 V +T K L   A+         ++ +TG+SGK++  + V ++ +  G       
Sbjct: 85  ------VQDTLKALQDIANYYLKTLNAKVIGITGSSGKTTTKNLVGRLLKLIG------- 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
               +S    +N +  P  I  A+       + V  + +E +  G  +  L  +  IA  
Sbjct: 132 -KVYVSKENFNNEIGVPLSILEAE-------KDVDFLVLEMAMRGKGEISL--LSKIAEP 181

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             G  TN+G  HI    +++A   AK  +F + + ++  AI+  DD++S ++ +R H
Sbjct: 182 DIGVITNIGWAHIGRLGSREAIMEAKAEIF-DYIKEDGIAILNRDDSFSMKIYERLH 237


>gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli]
          Length = 452

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALTAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
 gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
          Length = 478

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 164/371 (44%), Gaps = 26/371 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++VS A      +AT+
Sbjct: 26  DAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVSRAP-----AATL 80

Query: 87  R-SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +N  +L V +TR  L   A+    + P  ++AVTG++GK++V   +  I  ++     
Sbjct: 81  DVTNVAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDA 140

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203
           ++   +T  +F  +N +  P  ++   A   L+    G+ H    A    + Q  +  I 
Sbjct: 141 RL---ATAGNF--NNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMIN 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261
                  N  R+H ++  + +A       +    LP    A+   D A   E     +A 
Sbjct: 196 -------NAQREHQEFMVSVEAVAEEHAAVLAA-LPANGVAVYPRDAANGGEYAPVWKAA 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               RVL  G     +    V    + Q++ +   G+ F    PL G     NAL A   
Sbjct: 248 AGSRRVLDFGMDAGAV-TGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALAATAC 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +A G+   ++ + L     V GR +     + GG +  D Y    +S+   +  + T+ 
Sbjct: 307 ALAAGVAPEVIAQALGNFAPVKGRLQR-KQGTHGGLVIDDTYNANPDSMRAAIDALVTLP 365

Query: 381 SGRIIVVFGCG 391
           + R +V+   G
Sbjct: 366 APRWLVLGDMG 376


>gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
 gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
          Length = 505

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 159/372 (42%), Gaps = 33/372 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F AI G++ DGH F+  A   GA   VVS     +   A  R  
Sbjct: 28  ITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRAGAALHVVSE----KRLPALGRMQ 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+    L   A     +    I+AVTG+ GK++    ++Q     GLS+     
Sbjct: 84  APMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTKEALRQ-----GLSACG-SV 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---A 206
            ++++SF  +N      P+ LA+ L   S   +  + +   +H  +   L  +KL+   A
Sbjct: 138 HASVASF--NNHWGV--PLSLAR-LPADSRFAIFEIGM---NHPGEIRPL--VKLVRPHA 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-C 265
              T +   H+ + +      +AK  +FE ++P  S AII ADDA    +   A  AG  
Sbjct: 188 AIVTLIAAAHLGHFRDLDEIADAKAEIFEGIVPGGS-AIINADDAKCMRLAAAAKAAGVT 246

Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            VL+ G  +G    + +         +   + G++      +PG     N L   G    
Sbjct: 247 NVLTFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAAHV 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM-----ILKNIR 377
            G D A V E L +   + GR E       GG   I  D ++ +N   M      L N +
Sbjct: 307 AGADIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLANAK 366

Query: 378 TITSGRIIVVFG 389
              +GR I V G
Sbjct: 367 LSENGRRIAVLG 378


>gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
 gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
          Length = 482

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 163/378 (43%), Gaps = 28/378 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSAT 85
           +  I  V++DSR +Q G +FVA++G + D H F+   +A+GA A++VS    ++ D    
Sbjct: 27  DAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDL--- 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             S   +L V +TR  L   A+    + P  ++AVTG++GK++V   +      S + + 
Sbjct: 84  --SGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMI------SAVFAC 135

Query: 146 QIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGI 202
            +G  + +++    +N +  P  ++   A   L+    G+ H      +  L       +
Sbjct: 136 AVGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNH---PGETEVLATIAQPTV 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRA 260
            LI     N  R+H ++  + +A       +    LP +  A+   D A   E   + RA
Sbjct: 193 ALI----NNAQREHQEFMVSVEAVATEHAAVLAA-LPADGVAVFPRDAANGGEYAPLWRA 247

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                RVL  G +G  +    V    + Q V +   G  F F  PL G     NAL A  
Sbjct: 248 AAGTRRVLDFGIEGGAVS-ATVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAATA 306

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
             +A GI   ++ + L     V GR +       GG +  D Y    +S+   +  + T+
Sbjct: 307 CALAAGIAPEVIAQALSAFAPVKGRLQR-KPGVHGGLVVDDTYNANPDSVRAAIDALATL 365

Query: 380 TSGRIIVVFGCGGDRDQG 397
            + R +V+   G    QG
Sbjct: 366 PAPRWLVLGDMGEVGTQG 383


>gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 451

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 129/302 (42%), Gaps = 36/302 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R +Q G IF+A+ G K DGH F+  AI +GA A +V   Y+  D         P+
Sbjct: 33  IQTDTRVLQPGEIFLALGGEKFDGHQFVEMAITRGAVAAIVDYTYNYPDL--------PV 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V NT       A    G+    ++ VTG+ GK++    +  +    G          T
Sbjct: 85  IKVSNTLNAYQELAKWWRGQFGIPVIGVTGSVGKTTTKELIAAVLGTRGKVH------KT 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFT 210
             +F  +N +  P      K L  L SQG     +E +  G  Q   L  I K   G  T
Sbjct: 139 HGNF--NNEIGVP------KTLLEL-SQGDDFAVIEMAMRGRGQIAELTHIAKPNIGVIT 189

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   ++QA   AK  L  E +P +S A++  D+       K+  +    V+S 
Sbjct: 190 NVGTAHIELLGSEQAIAEAKCELLAE-MPNDSVAVLNYDNPLLMATAKQVWSG--EVISY 246

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G+ G  I  K V    + Q+V +           PL G     N L A  +   +G+D  
Sbjct: 247 GFSGGDIQGKLV----DYQKVEVG----GMTLPLPLAGVHNGSNFLAALAVAKVLGVDWK 298

Query: 331 LV 332
           L+
Sbjct: 299 LL 300


>gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL J1-023]
          Length = 470

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 50/370 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V+NT   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           + ++    +   R L+ G   +  I+  ++ A         + E  D +   P+ GE  V
Sbjct: 239 ENLLLGNVDGDFRQLTFGKSDEAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNV 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
           +N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ 
Sbjct: 298 FNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKT 356

Query: 372 ILKNIRTITS 381
           +LK    + S
Sbjct: 357 VLKTFMHMDS 366


>gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
 gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
          Length = 473

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 158/351 (45%), Gaps = 38/351 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR +  G IF  I G+  DGH F  QA  +GA A+++ +   L D     + + P+
Sbjct: 29  ISIDSRTLIEGDIFFCIKGHHLDGHDFAVQAYERGA-AVLIVAENRLADME---KISAPL 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VV +  + L   A     +    I+AVTG+ GK++    ++Q+    G           
Sbjct: 85  IVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKTTTKEVLKQVLATVG--------KVH 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS---F 209
            +S + +N    P  + LA+ +   S+ GV  + +   +H  +   L  +KL+       
Sbjct: 137 ANSASLNNHWGVP--LTLAR-MPVESNYGVFEIGM---NHKDEIRPL--VKLVHPHVVLI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           T++   H+ + +  +   +AK  +FE L  +E  A++ ADD +   ++++A      R+L
Sbjct: 189 THISAAHMGFFKNLEEIADAKAEIFEGL-DEEGIAVLNADDDFFPYLVQKAKQCSVKRIL 247

Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           S G      YQ K I L     + +   + +S+ G+D       PG   + N+L     C
Sbjct: 248 SFGETKNSDYQAKDIRL-----LTDYSSMIVSISGQDRAMKIGAPGRHIIQNSLAVIAAC 302

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIY-VDYAHTSNSLEM 371
            AIG+D   VL  L       GR   +  +   GG  Y +D ++ +N   M
Sbjct: 303 DAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNANPASM 353


>gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
 gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
          Length = 456

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 157/380 (41%), Gaps = 52/380 (13%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++++ V  DSR +Q G++FVAI G + + H FIP  +  GA  +V        DF     
Sbjct: 26  QEVSGVVIDSRKVQPGYLFVAIDGERVNAHKFIPDTVKAGAMCVVSHEDLGETDF----- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P ++V++T + L   A          ++ +TG+ GK+S    +  +  +     + +
Sbjct: 81  ---PYILVESTGQALLDIAKLYRDSFDMKVVGITGSVGKTSTKEMIASVLAQ----KYHV 133

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLI 205
               T+ +F  +N    P  I+     + ++    GV H          +  RL  +   
Sbjct: 134 --HKTLGNF--NNEWGLPITIFDMPEDTEVAVLEMGVNHFG--------EMRRLSSVASP 181

Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H+++ +T++     K ++ +++    S  +   DD  SK    +     
Sbjct: 182 DICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDDLLSKMSPVK----- 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ---------QVTISV-EGKDFDFLFPLPGEFQVYN 314
                 G    F  +   CA                TI++ +G  FD L P+PG   V N
Sbjct: 237 ------GVTPVFFGMGDNCAFRADNIEPQGLRGTSCTITLKDGSSFDCLVPVPGIHMVSN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+  A +   +G+ +  +   +E L  +PGR   + T+     I +D  + +N + M   
Sbjct: 291 AVAGAAVGYTLGLTADEIKAGIESLPSIPGRNHIIETDH---MIILDDCYNANPISMKAS 347

Query: 375 -NIRTITSGRIIVVFGCGGD 393
            ++  +  GR + V G  G+
Sbjct: 348 IDVLNMAIGRKVAVLGNMGE 367


>gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 503

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 154/358 (43%), Gaps = 55/358 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++ A+ G + DGH F   A+A+GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +T   L+  A+ +       +LA+TG++GK+SV + +  I Q +G      G 
Sbjct: 76  VPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVE---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +  +A              QT+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230

Query: 254 K--EVMKRAHNAGCR-VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              E   +A  A  R ++  G Q G  I  +++       Q T+     +     PLPG 
Sbjct: 231 MWFEQQLQAQPAQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGR 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             V NAL A GL +  GI   ++   L + H V GR   +      G + +D ++ +N
Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346


>gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
 gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
          Length = 455

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 162/369 (43%), Gaps = 38/369 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +VSSDSR +    +FVA+ G+  DGH F+  A   GA A++V     L D  A I   
Sbjct: 24  IEQVSSDSRAVDGKTLFVALKGDNFDGHNFVGSAAENGARAVLVER--ELPDAVAQI--- 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
               +VDN+++ +    + +  K     +A+TG++GK+SV   V  I  +      Q   
Sbjct: 79  ----IVDNSQRAMGDIGAYVREKLAPVCVALTGSNGKTSVKEMVATILSQ------QHQV 128

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T  +F  +N +  P  +   +A       GV  +   A+  G   +    +K      
Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLQAGDQF---GVFELG--ANHAGEIDYTSSLVKPSVAMV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+   H++   +      AK  +F   +  +  A+I ADDA++  ++  + +      +
Sbjct: 182 NNVASAHLEGFGSLAGVAKAKSEIFNH-VATDGIAVINADDAFAAVMLAASQHLTQLTFA 240

Query: 270 VGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +          K  A+H     +    IS   +    + PL G  QV NAL A+ +C+A+
Sbjct: 241 IDAAADV----KATALHADKGGRYSFDISYADQVESVVLPLAGRHQVLNALAASSICLAL 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSN--SLEMILKNIRTITSG 382
           G+  + + + L  L  V GR       +R GR+ V D ++ +N  S+   +  ++ I+  
Sbjct: 297 GMSLSFINQGLSLLEPVKGRM----LPTRLGRVTVIDDSYNANPASVGAAIDWLQEISGN 352

Query: 383 RIIVVFGCG 391
           R +V+   G
Sbjct: 353 RCLVLGDLG 361


>gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
 gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
          Length = 433

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 149/346 (43%), Gaps = 24/346 (6%)

Query: 25  WR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           W+  E K    S D+R+I+ G ++VA+ G + DGH F+  A  +GA AI+V         
Sbjct: 17  WKGQEIKFTGCSIDTRNIKPGTLYVALRGERFDGHDFVKDAQQKGASAIIVER------- 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSG 141
              +  + P L V +TRK L   A     +    ++A+TG++GK++    ++ I  Q+  
Sbjct: 70  --DVVCDLPTLRVADTRKALGDLARFWRQRFDLPVVAITGSNGKTTTKEMLKTIFTQKIS 127

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             S +I   +T  +   +N +  P  ++  +A     +     + + A+  G   +    
Sbjct: 128 AESNEINVLATQGNL--NNDIGVPLTLFNLQA-----NHRYAIIEMGANHAGEIAYLTQM 180

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            K    + T     H++  ++ +    AK  +F   L ++  AII  DDAY+    + A 
Sbjct: 181 AKPSVATITQCAPAHLEGFKSVEGVALAKGEIFSH-LTEDGIAIINNDDAYTTLWHELAA 239

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +      ++      +  K +    +     +  +  D     PLPG+  + NAL A+  
Sbjct: 240 SHQINTFALENTAD-VTAKDIQLNEDSCDFILHTQKSDIAIHLPLPGQHNIMNALTASAC 298

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +A G    ++ + L+ +  V GR +    N   G   +D  + +N
Sbjct: 299 ALACGCSLEIIQQGLQNMQPVKGRLQLHKIN---GITLIDDTYNAN 341


>gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
 gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
          Length = 453

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 157/370 (42%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAIV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQDL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +       
Sbjct: 73  IPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L + L P++   I+  DD            K++ 
Sbjct: 176 AMVTNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+          A  N   V I +  +++D+  P  G+  ++N+++
Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVL 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +A+G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++ 
Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLA 344

Query: 378 TITSGRIIVV 387
                +I+ +
Sbjct: 345 EFDGKKILAI 354


>gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 503

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 154/359 (42%), Gaps = 57/359 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++ A+ G + DGH F   A+A+GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +T   L+  A+ +       +LA+TG++GK+SV + +  I Q +G      G 
Sbjct: 76  VPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVE---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +  IA              QT+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERLGSLLGIA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230

Query: 254 ----KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
               +++  +     C ++  G Q G  I  +++       Q T+     +     PLPG
Sbjct: 231 MWFEQQLQAQPVQGRC-IVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPG 289

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
              V NAL A GL +  GI   ++   L + H V GR   +      G + +D ++ +N
Sbjct: 290 RHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346


>gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis 62]
          Length = 457

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 162/376 (43%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 20  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
             +    P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 73  VDVPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 346 SFSKMSKVGKRIAVLG 361


>gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
 gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
          Length = 470

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 157/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    +   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNIDGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFVTNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ TNS G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTNS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMDS 366


>gi|298525652|ref|ZP_07013061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298495446|gb|EFI30740.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 94_M4241A]
          Length = 223

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 11/200 (5%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +  +GV  V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  L
Sbjct: 5   LAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASL 64

Query: 234 FE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNK 288
           F+ +   +   A++  DD   + +  RA +A    ++V    +  H +           +
Sbjct: 65  FDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWRATDVAPTDAGGQ 120

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q   I   G        LPG + V N LVA  +   +G+     +  L ++  VPGR E 
Sbjct: 121 QFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQ 179

Query: 349 VGTNSRGGRIYVDYAHTSNS 368
           +    +G    VDYAH   S
Sbjct: 180 I-DRGQGFLALVDYAHKPES 198


>gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 457

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A      +  +D   
Sbjct: 21  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
             + + P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 76  PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 337 SPTALKTVLKTFMHMNS 353


>gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
 gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
          Length = 473

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 162/374 (43%), Gaps = 38/374 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI+ ++ F +         +S DSR +  G +F  I G+  DGH F   A AQGA 
Sbjct: 6   DKQALISAMNGFTVGCLPETFPGISIDSRTLLEGDVFFCIKGHHLDGHDFAAHAYAQGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV+            + + P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLVVAE----NRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q  +  G         + ++SF          P+ LA+ +   S   +  + +  
Sbjct: 122 KEALKQALETVG------KVHANLASFNN----CWGVPLTLAR-MPIDSDYAIFEIGMNH 170

Query: 190 SSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                D+ R   +KL+       T +   H+++ ++ +   +AK  +FE L  K+  A++
Sbjct: 171 K----DEIR-PLVKLVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEGL-DKDGIALL 224

Query: 247 YADDAYSKEVMKRAHNAGCR-VLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            ADD +   ++++A   G + + S G      YQ K     +V  + N   + + ++ KD
Sbjct: 225 NADDHFFSYLLQKAKQFGVKKIRSFGQSNCADYQAK-----EVRRLENCSCMIVHLDQKD 279

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRI 358
                  PG+  V N L     C A+G D A V+  L +  +  GR      + S GG  
Sbjct: 280 VMIKIGAPGQHMVQNGLSVLAACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTF 339

Query: 359 Y-VDYAHTSNSLEM 371
           + +D ++ +N   M
Sbjct: 340 HLIDESYNANPTSM 353


>gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria innocua
           Clip11262]
 gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           innocua Clip11262]
          Length = 457

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 157/370 (42%), Gaps = 50/370 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 21  FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V+NT   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 75  NPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225

Query: 254 KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           + ++    +   R L+ G      I+  ++ A         + E  D +   P+ GE  V
Sbjct: 226 ENLLLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNV 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
           +N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ 
Sbjct: 285 FNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKT 343

Query: 372 ILKNIRTITS 381
           +LK    + S
Sbjct: 344 VLKTFMHMDS 353


>gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
 gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
          Length = 459

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 54/372 (14%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I+ G +FV  VG   DGH F+ QA   GA A         Q    
Sbjct: 23  FRDVVITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQAREMGAVATF------WQKNVP 76

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A +   +    ++A+TG++GK++    +  I + S    
Sbjct: 77  NPPTDFPVILVEDTLLALQEMAKKYIQEVKPKVIAITGSNGKTTTKDIMAAIVETSYKVH 136

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 137 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 172

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    Y 
Sbjct: 173 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLSP--SGILIY---PYE 227

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEF 310
           + ++    +   R L+ G  Q   I+     AIH + + T  V     D +   P+ GE 
Sbjct: 228 EALLLSHIDGDFRQLTFGKSQEAEIY---PLAIHAEAEGTAFVTNWEPDLEIFVPIIGEH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
            V+NA+        IGI+   + + L  +     R E++ T   G RI  D Y  +  +L
Sbjct: 285 NVFNAMATMLAAREIGIEGEKIQKALRNMERSKSRLEWL-TTKNGTRILNDAYNSSPTAL 343

Query: 370 EMILKNIRTITS 381
           + +LK    + S
Sbjct: 344 KTVLKTFMHMDS 355


>gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
 gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
          Length = 452

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 152/359 (42%), Gaps = 37/359 (10%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + Q +   +Q  + K+N V++D+R I+ G +F A+ G + D H F+  A   GA A +V 
Sbjct: 6   VAQWTGGTLQGDDLKVNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTGGAIAALVD 65

Query: 75  SAYSLQD-FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                QD F + +R       V ++R+ L   A     +     LAVTG +GK++V    
Sbjct: 66  RE---QDSFESAVR-------VADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVKEMA 115

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +           G  +T  +F  +N +  P  +   +A    +   V  +   A    
Sbjct: 116 AAM--------LGDGTLATHGNF--NNDVGVPLTLLRLRAEHRFA---VIELGANAPGEI 162

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                L   +++    TN+   H++   + Q   +AK  +F    P    AII  DD+++
Sbjct: 163 AWTSSLTRPQVVL--VTNVTGAHLEGFGSMQGIADAKAEIFGGCTPG-GQAIINNDDSFA 219

Query: 254 KEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
               ++A  AG  V+ V        G  ++ + +    ++ +  +   G+      PLPG
Sbjct: 220 DFFAEKARAAGLTVVRVSMDESTRTGADLYAENIALHRDRAEFVLQPLGEAV--TVPLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             QV NAL+A     A+G++   VL  L  L  VPGR       + G    VD  + +N
Sbjct: 278 AHQVSNALMACAAVRALGVNLPQVLPRLAALKPVPGRMHI---QAAGAGAVVDDTYNAN 333


>gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Francisella
           cf. novicida Fx1]
          Length = 453

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAIV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQDL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +       
Sbjct: 73  IPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 127 ------FTQGNLNN-----YLGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L + L P++   I+  DD            K++ 
Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+             N   V I V  +++D+  P  G+  ++N+++
Sbjct: 235 CSMTNPKADILVLDYR----------VTSNSFAVKIRVFDQEYDYQLPNIGKHNLFNSVL 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +A+G++    L++ + +    GRF     N +   +   Y  ++ +++  ++++ 
Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLA 344

Query: 378 TITSGRIIVV 387
                +I+ +
Sbjct: 345 EFDGKKILAI 354


>gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 162/366 (44%), Gaps = 39/366 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSATIRSN 89
           +S+DSR ++   +F+ + G K DG  F+  AI +GA A++ +   +   L+DFS      
Sbjct: 29  ISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAIAVITARLENVECLKDFS------ 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V+ T + L   AS    K     +AVTG+SGK++    + QI  +     +++  
Sbjct: 83  VDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KYKVLK 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
           T    +F  +N +  P  I+     +   +  +  V +  S  G +  RL  I +     
Sbjct: 139 TE--GNF--NNEIGLPLTIF-----NLEDTHQIAVVEMGMSGFG-EIRRLKNIAEPQVAV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN+G  HI+   +++    AK  L E    +    +   DD  SK  +K +     +  
Sbjct: 189 FTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLKYS----SKYY 244

Query: 269 SVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAI 325
             G +   I   K C I   ++ +  +++ KD   +    +PG   VYN+L A  + +  
Sbjct: 245 RYGIKSGEI---KACDIKKGEKDIKYTLKYKDLEKEIKLSVPGIHNVYNSLAAICVGLEF 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383
           GI+   + E L+     PG+        +G    +D  + +N  S++  L  +R + + R
Sbjct: 302 GINVEDMAEALKDFQ--PGKMRL-NIIEKGDMKIIDDVYNANPDSMKAALSVLRDLPAKR 358

Query: 384 IIVVFG 389
            I V G
Sbjct: 359 KIAVLG 364


>gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes J0161]
          Length = 457

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 21  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 75  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 337 SPTALKTVLKTFMHMDS 353


>gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 457

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A      +  +D   
Sbjct: 21  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
             + + P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 76  PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 337 SPTALKTVLKTFMHMNS 353


>gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 1313]
          Length = 457

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 153/363 (42%), Gaps = 34/363 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR+I+ G +F+ ++G + DGH +I  A+  GA   +       + F   +     +
Sbjct: 29  ISTDSRNIKQGDLFIPLIGERFDGHNYIASALEHGALGSLTQK--ETEPFPGKV-----L 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T K L   A     K     + +TG+ GK+S    V  +  +     F++     
Sbjct: 82  IKVSDTLKALRDLAVYYRQKFKIPFVGITGSVGKTSTKEMVAAVLSKG----FKV--LKN 135

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  +N +  P  I+     +   S     V +  S  G        +K      TN+
Sbjct: 136 QGNF--NNEIGVPLTIF-----NLDKSHEAAVVEMGMSGFGEISRLTSIVKPDIAIITNI 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI+   ++     AKM +FE L  K   AI+  DD      +    N   +  +V Y
Sbjct: 189 GVSHIEKLGSKNNILKAKMEIFEGLNEK-GLAILNGDDK-----LLYGLNNLLKFRTVFY 242

Query: 273 ---QGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              +G  +    V ++  K     I + GK++    P+PG   VYNAL    + I +GI 
Sbjct: 243 GMEEGLDLRAYNVESLGEKGSTFDIEIRGKEYRVRIPVPGIHNVYNALAGIAVGIELGIP 302

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIV 386
              ++E +E+    PG+      N  G +I  D Y  +  S+E  +  ++ I+  GR   
Sbjct: 303 PEKIVEGIEEFS--PGKMRLDIINYNGLKIINDAYNASPQSMEAAIDVLKDISGEGRTFA 360

Query: 387 VFG 389
           V G
Sbjct: 361 VLG 363


>gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes L99]
          Length = 470

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMDS 366


>gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
 gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
          Length = 450

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 21  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141
           + P++ V +  K +   A+    K    ++A+TG++GK+       SV S   +  +  G
Sbjct: 74  DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +     
Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAEGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 345 TKGRRIAVLA 354


>gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
 gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
          Length = 470

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A      +  +D   
Sbjct: 34  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 88

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
             + + P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 89  PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMNS 366


>gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 470

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMDS 366


>gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
 gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
          Length = 457

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 21  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 75  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 337 SPTALKTVLKTFMHMDS 353


>gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
 gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
          Length = 470

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMDS 366


>gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes FSL R2-561]
          Length = 470

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMDS 366


>gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 503

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 154/359 (42%), Gaps = 57/359 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++ A+ G + DGH F   A+A+GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +T   L+  A+ +       +LA+TG++GK+SV + +  I Q +G      G 
Sbjct: 76  VPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVE---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +  +A              QT+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230

Query: 254 ----KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
               +++  +     C ++  G Q G  I  +++       Q T+     +     PLPG
Sbjct: 231 IWFEQQLQAQPVQGRC-IVRYGLQIGADITARQLQLQAGAAQFTLVTPQGEAQVALPLPG 289

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
              V NAL A GL +  GI   ++   L + H V GR   +      G + +D ++ +N
Sbjct: 290 RHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346


>gi|257056716|ref|YP_003134548.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
 gi|256586588|gb|ACU97721.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
          Length = 472

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 154/418 (36%), Gaps = 71/418 (16%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
           S  I+ + P LV    R    L  +       E   +  + GT GK+S  S +    Q  
Sbjct: 82  STAIKEDNPELVAARERGIPVLHRAEALAALMEGHRVACIAGTHGKTSTTSMLTVALQHC 141

Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA-------LSYLSSQGVTHVSVEASSH 192
            L  SF IG     S     N       I++A+A       LSY  S  V          
Sbjct: 142 RLDPSFAIGGDLNESGA---NAHHGQGGIFVAEADESDGSFLSYSPSVAV---------- 188

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYAD 249
                            TN+  DH+D+H T  AY      +F + + +  P    I+ AD
Sbjct: 189 ----------------ITNIEPDHLDHHGTADAYHA----VFHDFVRRIEPGGTLIVCAD 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPL 306
           D  + E+  RA   G RVL  G         +V       +   V I + G+       +
Sbjct: 229 DEAASELATRAEADGVRVLRYGRAATGEADARVLDYSPGEDGGTVRIVLRGEQLRMGVAV 288

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAH 364
           PGE   +NA+ A    + +G D   ++E L     V  RFEF G   R G  R+Y DYAH
Sbjct: 289 PGEHMAFNAVAALLAGLELGADLEGLVEGLAAFGGVRRRFEFKG---RAGDVRVYDDYAH 345

Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +   L+ +R     GR++VVF                 AL LAD  +V D     E
Sbjct: 346 HPTEVSAQLRAVRQAAGRGRVVVVFQPHLYSRTRAFAAEFAEALGLADEVVVLDVYGARE 405

Query: 424 DPE----------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DPE          +I+    H  P F        A+    ++    DV+V  G G  T
Sbjct: 406 DPEPGVTGELVASRIKGANAHYEPAF------DRAVSLVADLAKPGDVVVTMGAGDVT 457


>gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes Finland 1988]
          Length = 466

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 30  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 83

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 84  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 143

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 144 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 179

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 180 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 234

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 235 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 287 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 345

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 346 SPTALKTVLKTFMHMDS 362


>gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes LO28]
          Length = 447

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 11  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 64

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 65  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 124

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 125 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 160

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 161 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 215

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 216 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 267

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 268 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 326

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 327 SPTALKTVLKTFMHMDS 343


>gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
 gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
          Length = 470

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMDS 366


>gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
          Length = 457

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 172/367 (46%), Gaps = 31/367 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K   +S+D+R I    IF+A+ G+  + + +I  A  +GA   +V    +  D  + +  
Sbjct: 25  KYTNISTDTRKITKDSIFIALKGDNFNANDYIVDASDKGANLCIVDEI-NFND--SDLNE 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQI 147
           NT I++V+NTRK L   A     K    I+ +TG++GK+S           + LSS +++
Sbjct: 82  NTSIILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTSTKDLTA-----AALSSKYKV 136

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
             T    +F  +N +  P  I+     S  +S  V  + +  S+   + HRL  + K   
Sbjct: 137 FKTQ--GNF--NNEVGLPLMIF-----SLDNSYDVAVLEMGMSNFE-EIHRLAKVAKPDI 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI+  +T++    AKM +  +   K+S  I+  ++    +++K   +   +
Sbjct: 187 ALITNIGISHIENLKTRENILKAKMEI-TDFFNKDSILIVNKEN----DLLKNVKSNEYK 241

Query: 267 VLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           ++S+G++    +  + +    N  + T+  E +   F  P+PG+  + N+++A     ++
Sbjct: 242 LMSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERFNIPVPGKHNILNSMLAIVAGRSL 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGR 383
            I+   + + ++ L V   R + V    + G   VD  Y  + +S++  +  I TI   R
Sbjct: 302 DIEYDKLKQGIKNLSVTSMRLDIV---KKDGFTIVDDSYNASPDSMKAAIDVITTIKGNR 358

Query: 384 IIVVFGC 390
            I + G 
Sbjct: 359 KIAILGT 365


>gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           schoenbuchensis R1]
          Length = 473

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 159/379 (41%), Gaps = 53/379 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTP 91
           +S DSR +  G IF  I GN  DGH F  QA A+GA  +VV+     Q+  A ++    P
Sbjct: 29  ISIDSRSLIEGDIFFCIKGNSLDGHDFAAQAYAKGAGVLVVA-----QNRLAEMKMLAAP 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++VV +  K L   A     +    I+AVTG+ GK++    ++Q     G     +G  +
Sbjct: 84  LIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKTTTKEALKQALGTVGRVYANLGSFN 143

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGS 208
                          P+ LA+ +   S  G+  + +   +H  +   L  +KL+      
Sbjct: 144 NCWGV----------PLTLAR-MPADSDYGIFEIGM---NHKDEIRPL--VKLVRPHVAL 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267
            T++   HI + +  +   +AK  +FE  L  E  A++ AD  +   ++++A   G  ++
Sbjct: 188 ITHIAAGHIGFFKNLEEIADAKAEIFEG-LDDEGVALLNADSHFFSRLVQKAEQCGVKKI 246

Query: 268 LSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           LS G      YQ K IHL   C+      +T+    +D       PG   V N L    +
Sbjct: 247 LSFGESQGANYQAKEIHLLTDCSC-----MTMHFSNQDITVKIGAPGRHIVQNILGVLAV 301

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIY-VDYAHTSNSLEM---- 371
           C  +G D   V   L    +  GR    G   R     GG  + +D ++ +N   M    
Sbjct: 302 CDVVGADLTRVSLALNCFSLPKGR----GNRYRLSLPNGGEFHLIDESYNANPASMRAAL 357

Query: 372 -ILKNIRTITSGRIIVVFG 389
            +L      T GR I + G
Sbjct: 358 DLLAAGPVGTRGRKIAILG 376


>gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp.
           1-1C]
          Length = 472

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 164/397 (41%), Gaps = 43/397 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI+ +  F +         VS DSR + AG IF  I G+  DGH F   A AQGA 
Sbjct: 6   DKQALISAMDGFTIGCLPEIFPGVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHAYAQGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV+            +   P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLVVAQ----NRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q  +  G     +   +               P+ LA+ +   S  G+  + +  
Sbjct: 122 KEALKQALETVGKVHANLASLNNCWGV----------PLTLAR-MPIDSDYGIFEIGM-- 168

Query: 190 SSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            +H  +   L  +KL+       T +   H+++ +  +   +AK  +FE  L K   A++
Sbjct: 169 -NHKNEIRPL--VKLVCPHVVLITRIAAGHMEFFKDLEEIADAKAEIFEG-LDKNGIALL 224

Query: 247 YADDAYSKEVMKRAHNAGCRVL-------SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            ADD +   ++K+A   G + +       S  YQ K + L + C+      + +    KD
Sbjct: 225 NADDHFFSYLLKKAKQCGVKEIRSFGRSNSADYQVKEVRLLENCSC-----MVVHFYQKD 279

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRI 358
                  PG+  V N L     C  +  D A +   L +  +  GR      + S GG  
Sbjct: 280 MMIKIGAPGQHMVQNGLSVLAACDTVCADLAHITLALGRFSLQKGRGALYKLSLSNGGMF 339

Query: 359 Y-VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           + +D ++ +N + M L  +  + +G I    G GG R
Sbjct: 340 HLIDESYNANPVSM-LTALDLLATGPI----GVGGKR 371


>gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes 220]
          Length = 457

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A      +  +D   
Sbjct: 21  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
             + + P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 76  PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 337 SPTALKTVLKTFMHMDS 353


>gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
 gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
          Length = 462

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 158/376 (42%), Gaps = 40/376 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W +++I  V  D+R +    +FV ++GN  DGH FI +AI  GA A + S   SL+D   
Sbjct: 22  WSDQEIISVDFDTRKLVKESLFVPLIGNN-DGHQFILKAIENGARASLWSK--SLKDLPF 78

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQIC 137
            + ++ P++ V++T K L   A     K    ++ +TG++GK++       V S   ++ 
Sbjct: 79  EVAADFPVIQVEDTLKALQDLAKFYLTKVNPKVVGITGSNGKTTTKDMTDAVLSSQYRVH 138

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +  G  +  IG   TI     D  +              +   G+ H         L + 
Sbjct: 139 KTQGNFNNHIGLPITILEMPIDTEVV-------------ILEMGMNHAGEIKVLSDLAEP 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
            +  I +I       G  HI++  ++    +AKM +   L  KE+  +IY  ++   +E 
Sbjct: 186 DVAIITMI-------GESHIEFFGSRAGIADAKMEISSGL--KENGVLIYPGEEPLLQER 236

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +    +   +      +     L  + A  N+   T + E  D     P+ G + V NAL
Sbjct: 237 VTFLTDKQLKTFGTAAENDLYPL-NIDAQMNQTSFTTN-ETPDMTISLPVLGTYNVNNAL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD-YAHTSNSLEMILK 374
            A    I +G+        L K  +   R E+ VG N  G RI  D Y     +++ +L 
Sbjct: 295 AALMAGIVLGVPIQKSAPKLAKFQLTKNRTEWLVGIN--GSRILNDAYNANPTAMKAVLD 352

Query: 375 NIRTI-TSGRIIVVFG 389
           N  T    G+ IV+ G
Sbjct: 353 NFSTFENEGKKIVILG 368


>gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
          Length = 450

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 153/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 21  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141
           + P++ V +  K +   A+    K    ++A+TG++GK++       +        +  G
Sbjct: 74  DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +     
Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT-I 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   +  +
Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLL 344

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 345 TKGRRIAVLA 354


>gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 10403S]
          Length = 457

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 21  FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 75  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 337 SPTALKTVLKTFMHMDS 353


>gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
 gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
          Length = 473

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 147/348 (42%), Gaps = 38/348 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR    G +FV I G + DGH +  +A+ QGA A++  +A  L+  S      
Sbjct: 27  VTSVVTDSREAVPGSLFVCIAGERVDGHDYAARAVEQGAVAVL--AARPLEGLS------ 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L+V +T + L   A+   GK    ++ +TG++GK++V   +  +  R G        
Sbjct: 79  VPVLLVQDTVRALGAVAALWRGKSSARVVGITGSAGKTTVKELLAHVLSRRG-------- 130

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EAS-SHGLDQHRLDGI-KLIA 206
            +  ++   +N++  P        L  L + G     V EA  SH  D   L  I +   
Sbjct: 131 KTACNALNLNNQVGMP--------LCMLKTDGDEDFWVFEAGISHEGDMDELGAILQPDL 182

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+G  H +    +   ++ K RL   L P E  A++ AD     ++++ A      
Sbjct: 183 ALILNVGAAHTEGLGERGVAWH-KSRLLAHLAP-EGQALVSAD---YDDLVREARAVFGD 237

Query: 267 VLSVGYQGKFIHLKKV---CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           VL     G+ +  +     C+     Q  + ++G+  D + P  G++   N +  A    
Sbjct: 238 VLFFTASGRPLSYRAAYAGCSDGVHGQYRLWLDGRPCDVIAPFRGDYGTENCIAVAAAAH 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +G+ +  +        + P RF     + RG    VD  + +N L M
Sbjct: 298 MLGLTAEEIAAGFADAQLPPQRF---ARSRRGNWDIVDDTYNANPLSM 342


>gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
 gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
          Length = 450

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 21  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141
           + P++ V +  K +   A+    K    ++A+TG++GK+       SV S   +  +  G
Sbjct: 74  DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +     
Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 345 TKGRRIAVLA 354


>gi|145356732|ref|XP_001422580.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582823|gb|ABP00897.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 680

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 98/456 (21%), Positives = 190/456 (41%), Gaps = 72/456 (15%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           ++ PI VV++  + L+  A   YG   + +  +A+TG+ GK++ +  V+ + + + +   
Sbjct: 177 ADVPIAVVEDVDEALADIARVFYGDPSKALTAIALTGSVGKTTTSYLVKAVFEEADI--- 233

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSY------LSSQGVTHVSVEASSHGLDQHRL 199
           ++G   +  ++  D    T      + AL +      ++  G     +E S+  + +   
Sbjct: 234 RMGLVGSNGNYVGDELKLTAQGGRGSDALQFQQLTAGIADNGAQAAVMEVSAEQVRRKAT 293

Query: 200 DGIKLIAGSFTNL--GRDHI-----DYHQTQQAYFNAKMRLFEELLPKESP-AIIYAD-- 249
            G+     + T+   G D +     DY      Y +    +F+ L   E+  A+I  D  
Sbjct: 294 RGMNFDIVALTSPLEGPDAMSDRRKDYRGLDAEYSSHVAEVFKALEDAETQRAVINVDAI 353

Query: 250 ---DAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              D      + + H  G   L+         G  ++  +V     +  V++S    + +
Sbjct: 354 DDNDKTPYHELCKEHAKGVPQLTYSVDPENPNGADVYPARVDYSLFETAVSLSTPAGNVE 413

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            +  L GE  V     A  + +A  I   ++   LE    +PGR E V    +   + VD
Sbjct: 414 VVVGLVGEHMVNAICCATAIGLAAEIPLDVIAAGLEATDSIPGRMELVDAG-QDFSVLVD 472

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDD 418
            A+T  ++  ++ +++     R+I V GC G+    ++G+R ++GK   D +D+  VT+D
Sbjct: 473 SANTPEAIRSVIDSVKATNCRRVITVIGCEGEMAESERGQRAVIGKTVHDHSDVVFVTND 532

Query: 419 NPRSEDPEKIRAEIIHGI-------PGFIEKG---------------------------- 443
           +P++EDP KI  +I  G        PG  ++                             
Sbjct: 533 SPKAEDPYKILEDICAGFRDEIYSKPGMEDEALFPFLKDMYEVHENAQYECMRLQNLVRR 592

Query: 444 ----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
               +R  AIR AI M  + DV+++ G+G +   +V
Sbjct: 593 YVMVDRYHAIRAAIGMAERDDVVLIIGRGAKDYFVV 628


>gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes str. Scott A]
          Length = 470

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A      +  +D   
Sbjct: 34  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 88

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
             + + P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 89  PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMDS 366


>gi|110802290|ref|YP_699487.1| cyanophycin synthetase [Clostridium perfringens SM101]
 gi|110682791|gb|ABG86161.1| cyanophycin synthase (L-aspartate-adding) [Clostridium perfringens
           SM101]
          Length = 874

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 171/405 (42%), Gaps = 35/405 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +     L  F +G T+T      
Sbjct: 464 RKILDNMFKNNYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH  
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ID     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324
           +     L+     +  + + +   GK++      D  F + G+ +  + NA+ A    + 
Sbjct: 637 LQENLKLENPIVFYRDETIYVKNRGKEYKIASAEDMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +D  ++ + L+K         GRF     N  G  + +DY H  +  ++++ +++ + 
Sbjct: 697 IEVDYCIISKGLKKFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              I  + G  GDRD      +GKI+ D  D I I  D + R +D  ++ + I  G+   
Sbjct: 755 FKNITGIIGVPGDRDLNTMKEVGKISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             K   +       EA+R  +++  K + +++  + +E+++ + N
Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859


>gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
 gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
          Length = 470

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 41  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 93

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141
           + P++ V +  K +   A+    K    ++A+TG++GK+       SV S   +  +  G
Sbjct: 94  DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 153

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 154 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +     
Sbjct: 198 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 252

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 253 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 306 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 364

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 365 TKGRRIAVLA 374


>gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-003]
          Length = 457

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 21  FRDVVITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 75  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 337 SPTALKTVLKTFMHMDS 353


>gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 503

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 152/358 (42%), Gaps = 55/358 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G +++A+ G + DGH F   A+A+GA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLLVGRL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV+N    L+  A+ +       +LA+TG++GK+SV + +  I Q +G      G 
Sbjct: 76  VPQVVVENAELALARVAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL  +  +A              QT+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYTA--------LPADGVAVINADDAFG 230

Query: 254 ---KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              ++ +      G R+L  G      I  +++       Q T+     +     PLP  
Sbjct: 231 MWFEQQLLAQPVQGRRILRYGLHISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPAR 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             V NAL A GL +  GI   ++   L + H V GR   +      G + +D ++ +N
Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346


>gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
 gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
          Length = 454

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 129/298 (43%), Gaps = 36/298 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R +Q G +FVA+ G K DGH F+  AI +GA A +V  AY    F        P+
Sbjct: 33  IQTDTRILQPGEVFVALRGEKFDGHEFVAMAIVKGAIAAIVDYAYENPVF--------PV 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +T K            +   ++ VTG+ GK++    +  +    G    Q+    T
Sbjct: 85  LQVTDTLKAYQQIGRWWRDSYSIPVIGVTGSVGKTTTKELIAAVLATKG----QV--HKT 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFT 210
             +F  +N +  P      K L  L ++    V +E +  G  Q   L  I +   G  T
Sbjct: 139 YGNF--NNEIGVP------KTLLELGAEHDFAV-IEMAMRGRGQIAELTQIARPTIGVIT 189

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   +++A   AK  L  E +P +S AI+  D     E  K+      +V+S 
Sbjct: 190 NVGTAHIELLSSEEAIAEAKCELLAE-MPNDSVAILNYDSPLLMETAKKFWQG--KVISY 246

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G+ G  I  K    I N+   T+ V G       PLPG     N L A  +   + ID
Sbjct: 247 GFSGGDIQGK---LIDNE---TVEVAG--IGLPLPLPGRHNATNFLAALAVAKVLEID 296


>gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 455

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 141/333 (42%), Gaps = 50/333 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ D R +Q G  FVA VG + DGH F+ +A  +GA   VV+     +D    +   
Sbjct: 27  VTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGASVAVVT-----EDVKTAL--- 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V N  + +   A    G+    ++ +TG++GK++    V  +          +GP
Sbjct: 79  GPCIRVQNALQAVQALARWERGQFEGPVVGITGSNGKTTTKEMVAAVLG-------ALGP 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
               +S  Q+N L  P  I L +  S+ +      + +E    GL Q  ++ +  IA   
Sbjct: 132 -CVYTSANQNNELGLPLTI-LQRDASHRA------MVLEMGMRGLGQ--IEELCTIARPN 181

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  T++G +HI+   +Q+    AK  L    LP +  A++  DD + + +    H    
Sbjct: 182 IGVITHIGYNHIELLGSQENIALAKTELIAS-LPNDGIAVLNGDDPWLRRMQ---HRTSA 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL 316
           R+L  G       + + C I     VT S EG  F+   P         L G+  V NAL
Sbjct: 238 RILWYG-------MGEGCDIR-ATSVTWSQEGMSFEVDTPHGTATLRIRLLGQHNVMNAL 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            A  +   +GI    +   L ++    GR   V
Sbjct: 290 AAIAVGQTLGISLGDIQIGLGRVEAQRGRLRLV 322


>gi|206895846|ref|YP_002247446.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738463|gb|ACI17541.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 433

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 148/366 (40%), Gaps = 36/366 (9%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           SSD R    G IF A  G   D    IP+ +   A+ I+               + + ++
Sbjct: 24  SSDDRWFMDGDIFFAFTGAHFDARTLIPE-LKNKAKLIITEKE----------ATGSNVI 72

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              + R+    F       +P ++L +TGT GKS++A ++  +           G   T+
Sbjct: 73  YRPDARQIYKKFIKAGAKVYPLHVLGITGTKGKSTIAWWLSSL--------LGFGYMGTL 124

Query: 154 SSFAQDNRLTTPSPIYLAKAL-SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
              A+D +   P+    A AL +     G  H  VE SS GL + RL  + L    +T  
Sbjct: 125 GIRAKDVKFVLPTTTTGADALFNTYRRTGEDHWVVELSSIGLAEDRLP-LPLEGLVWTTF 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             +H+DYH+T  AYF AK + F   L K + A++       + V +         L  G 
Sbjct: 184 EPEHMDYHKTTYAYFLAKKKAF-SYLKKGTFALL------GQNVPQADIGTPYLTLRYGD 236

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G F  L +      +Q+V I           P+PG+   ++A+   G   A  +     
Sbjct: 237 TGNFYILDR-REYEWEQEVKIYTPQGPSVVHIPMPGKVFAHDAV---GTVAAAFLWKGTK 292

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           LE   +   VP R   V  N  G  + +D+AHT  S++  L+ +        +V+ G  G
Sbjct: 293 LEG--EFPSVPVRMNHVIIN--GIEMVIDFAHTPESIDACLQTVAQRWGNDFVVIHGATG 348

Query: 393 DRDQGK 398
              Q K
Sbjct: 349 YEPQNK 354


>gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfotomaculum reducens MI-1]
 gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfotomaculum reducens MI-1]
          Length = 457

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 158/368 (42%), Gaps = 37/368 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  + +DSR  +   +FVA+ G + DGH F  +AI QGA A++VS   +       I  
Sbjct: 25  KIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAIEQGASALLVSREIT------GIAP 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+++V NT + L   AS    +    ++AVTG++GK+S    +  +      + F+  
Sbjct: 79  QIPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSNGKTSTKDMIAAVLN----TRFKT- 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAK---ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
              T  +F  +  L         +   A+  +  +G   +             L G+   
Sbjct: 134 -LKTEGNFNNELGLPLTLLGLGEEHQVAVVEMGMRGPGEIDF-----------LAGLAKP 181

Query: 206 AGS-FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            G+  TN+G  H++   + +    AK  +   +  ++  AI+ AD  Y  E+   A N  
Sbjct: 182 TGAVITNIGEAHLERLGSVENIALAKTEVLAHI-GRDGFAILNADSPYLGEL---ARNCQ 237

Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +V     +G   +    +       +  IS  G   +   P+PG   V N+L A G+ +
Sbjct: 238 GKVWLYSLEGIGDLQASNIRPEGTGVRFNISSPGGKEEIYLPVPGSHNVMNSLAAIGVGL 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITS 381
            +G+    + + L +L +   R + + +N   GR+ ++  + +N  S +  LK ++    
Sbjct: 298 QLGLQLEEIAQGLAQLCLTHSRLQILSSN---GRVIINDTYNANPSSTKAALKVLKETAR 354

Query: 382 GRIIVVFG 389
            R I V G
Sbjct: 355 SRKIAVLG 362


>gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
 gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
          Length = 470

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATF------WQKDVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
               + P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 350 SPTALKTVLKTFMHMDS 366


>gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
 gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
          Length = 447

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 11  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATF------WQKDVP 64

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
               + P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 65  NPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 124

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 125 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 160

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 161 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 215

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 216 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 267

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 268 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 326

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 327 SPTALKTVLKTFMHMDS 343


>gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 459

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 162/388 (41%), Gaps = 80/388 (20%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VSSDSR + +  +FVA+ G   DGH F   A+  GA A++V     +         N
Sbjct: 24  IDSVSSDSRAVNSQTLFVALKGENFDGHAFAQAAVDAGANALLVERELPI---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142
              L+V+N++K +    + +  +     +A+TG++GK+SV   +        Q+   +G 
Sbjct: 75  ATQLIVNNSQKAMGEIGAYVREQVAPTCVALTGSNGKTSVKEMIATILSQKHQVLYTAGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   T+    Q +                    GV  +   A+  G   +    +
Sbjct: 135 FNNEIGVPLTLLRLQQGDEF------------------GVFELG--ANHAGEIDYTSSLV 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K       N+   H++   + +    AK  +F   +     A+I ADDA++ +VM +A +
Sbjct: 175 KPSVAMVNNVASAHLEGFGSLEGVAKAKSEIFNH-ISTGGTAVINADDAFA-DVMLQASS 232

Query: 263 AGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKD----------FDFLF------- 304
                          H+K++C  + N+    + V   D          F   +       
Sbjct: 233 ---------------HVKQLCFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDAEVHRV 277

Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-D 361
             PL G  QV NAL A  +CIA+G+   L+ + L  L  V GR       S+ GR+ V D
Sbjct: 278 ELPLAGRHQVSNALAATSICIALGLSLPLICQGLSLLQPVKGRM----LPSQLGRVTVID 333

Query: 362 YAHTSN--SLEMILKNIRTITSGRIIVV 387
            ++ +N  S+   +  ++ I   R +V+
Sbjct: 334 DSYNANPASVGAAIDWLQEIKGNRCLVL 361


>gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum GMI1000]
 gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum GMI1000]
          Length = 482

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 159/375 (42%), Gaps = 22/375 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSAT 85
           +  I  V++DSR +  G +FVA++G + D H F+P  +A+GA A++VS     + D S  
Sbjct: 27  DAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPPVGIPDLSGV 86

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 +L V +TR  L   A+    + P  ++AVTG++GK++V   +      S + + 
Sbjct: 87  A-----VLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMI------SAVFAC 135

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
            +G  + +++    N     + I L   L  L++Q    V     +H  +   L  I + 
Sbjct: 136 AVGEAARLATAGNLN-----NDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAIAQP 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHN 262
                 N  R+H ++         A+       LP +  A+   D A   E   + RA  
Sbjct: 191 TVALINNAQREHQEF-MVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWRAAA 249

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              RVL  G +G  +    V    + Q++ +   G  F F  PL G     NAL A    
Sbjct: 250 GTRRVLDFGIEGGAVS-AAVTDTADGQRIDVHAPGLRFSFTLPLLGVHNARNALAATACA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A GI   ++ + L     V GR +    +  G  I   Y    +S+   +  + T+ + 
Sbjct: 309 LAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAAIDALATLPAP 368

Query: 383 RIIVVFGCGGDRDQG 397
           R +V+   G    QG
Sbjct: 369 RWLVLGDMGEVGTQG 383


>gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes Clip81459]
 gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 457

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 64/377 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 21  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATF------WQKDVP 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
               + P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 75  NPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336

Query: 365 TSNSLEMILKNIRTITS 381
           +  +L+ +LK    + S
Sbjct: 337 SPTALKTVLKTFMHMDS 353


>gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Francisella cf. novicida 3523]
          Length = 453

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 155/370 (41%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAI+ N+ DGH FIP AIA GA+A++VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVAIIANR-DGHEFIPSAIANGAKAVLVSKKQDL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK++V   +  +     L S ++  
Sbjct: 73  IPQVVCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKTTVKEMIVTL-----LGSKKV-- 125

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 126 -----HFTQGNFNN-----YLGVPMTILETPHNVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---------YADDAYSKEVM 257
              TN+G  H++  +T       K  L +  LPK+   I+         YAD    K++ 
Sbjct: 176 AMITNVGASHLENLKTLDGVMIEKGELLKA-LPKDGFCIVNLDDERIPAYADKLDCKKIT 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + YQ                 V I +  K++ +  P  G+  + N+++
Sbjct: 235 CSMSNQDADILILDYQ----------VTPELYDVKIRIFDKEYSYQLPNIGKHNLSNSML 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +A G +    L++ + +    GRF     N +   +   Y  ++ +++  ++++ 
Sbjct: 285 AIASVVAAGFEPNSFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLA 344

Query: 378 TITSGRIIVV 387
                R+I +
Sbjct: 345 EFDGKRVIAI 354


>gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 459

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 169/380 (44%), Gaps = 50/380 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW + ++  V+ DSR+++AG +FV + G ++DGH ++ +A   GA+A + +     +D  
Sbjct: 20  QWGDIEVRSVAFDSRNLEAGGLFVPLKG-EQDGHQYVAKAFENGAKATLWA-----KDHP 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P LVVD+  + L         K    ++AVTG++GK++    V  I       
Sbjct: 74  YDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTKDMVASIL------ 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH------GLDQH 197
           + Q+    T ++F  +N +  P                VT +++EA++       G+D+ 
Sbjct: 128 ATQMNVIKTYANF--NNEIGVP----------------VTLLNMEANTEAVVVEMGMDRF 169

Query: 198 -RLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +LD +  +        T +G  HI++  ++    +AKM +   L   E    +Y  D  
Sbjct: 170 GQLDLLSRLTTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGL--AEDGTFVY--DGD 225

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQ 311
              + +RA     +  + G Q     L       +   V+ +V +  D  F  PL GE+ 
Sbjct: 226 EPLLRERAAKLSQQTKTFGRQLD-DDLYATSVNPDVDHVSFTVNQWPDEVFTIPLVGEYN 284

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V NAL A  +   + +  A + + L+ + +   R E+V   + G RI  D Y     +++
Sbjct: 285 VNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVA-GANGERILSDVYNSNPTAVK 343

Query: 371 MILKNIRTI-TSGRIIVVFG 389
            +L  + TI  +G+ + V G
Sbjct: 344 EVLATLATIPVAGKRVAVLG 363


>gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
 gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
          Length = 470

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 147/334 (44%), Gaps = 29/334 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++I + +  P+Q    ++  +S DSR  +   +F AI G + DGH F+ QA+ +GA A V
Sbjct: 11  QVIQRGATNPLQ-ELAEVAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGAAACV 69

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V           T   +  +L VD+    L  FA     +    ++ VTG+ GK++  S 
Sbjct: 70  VKRG------EVTDPGSQLLLEVDDVNHALMQFARWYREQQSARVIGVTGSVGKTTTRSM 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +      + LSS   G  S  ++F  +N    P  I      + + S     V   A+SH
Sbjct: 124 I-----YTALSSCLTGIQSP-ANF--NNEFGVPLSI------AGIESSHQFAVLELAASH 169

Query: 193 GLDQHRLDGIKLIA-GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +   L  I L   G  T +G  H+++  T Q     K  LFE+ LP    AI+  DD 
Sbjct: 170 VGEIRELAAIALPQIGVITAIGHSHLEHFGTLQQIAETKGELFEQ-LPATGLAIVCGDDP 228

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           ++  +  R      R + +G  G+   L+ V    ++Q ++  V G+   +L P+ G   
Sbjct: 229 FADCLASRTT---ARKVRIGL-GENNDLQAVSIEQDQQGISFRVNGQ--QYLLPVVGRHF 282

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           V  AL A  +   +GI    V E L     VPGR
Sbjct: 283 VNAALAAIAVARELGISEQDVAESLRNYSTVPGR 316


>gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
 gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
          Length = 457

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 20  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 73  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 184 ------------AITMIGEAHVENFGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 346 SFSKMSKVGKRIAVLG 361


>gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 450

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 155/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 21  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141
           + P++ V +  K +   A+    K    ++A+TG++GK+       SV S   +  +  G
Sbjct: 74  DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+P +   ++ +D+     +     
Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPSDEPLLTPLTATLV 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAEGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 345 TKGRRIAVLA 354


>gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           loihica PV-4]
 gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella loihica PV-4]
          Length = 456

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 168/379 (44%), Gaps = 57/379 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +++VSSDSR + A  +FVA+ G + D H F  +A+  GA A++V     +          
Sbjct: 24  VSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVMDGASALLVERELPIA--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V N++K +    + +        +A+TG++GK+SV   V  I       S Q   
Sbjct: 75  APQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKTSVKEMVATIL------STQHQV 128

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +F  +N +  P + + L     Y +   G  H+     +  L Q  +  +     
Sbjct: 129 LYTAGNF--NNEVGVPLTLLRLEPQHEYGVFELGANHLGEINYTSSLVQPDVAMV----- 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H++   + +    AK  +F   L K+  A+I ADDA++ +VM+RA  +  + 
Sbjct: 182 --NNVASAHLEGFGSLEGVAKAKSEIFLH-LAKDGVAVINADDAFA-DVMRRAAASHTQ- 236

Query: 268 LSVGYQGK------------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           LS   QG              +   +    +  +Q T+S          PL G  QV NA
Sbjct: 237 LSFSSQGNPADVSADELSADALGCYRFRIAYLDEQRTVS---------LPLSGRHQVSNA 287

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSN--SLEMI 372
           L A  +C+A+G+    +++ L +L  V GR +     +R GR + +D  + +N  S+   
Sbjct: 288 LAATSICLALGLSLDEIVQGLMRLQPVKGRMQ----PTRLGRFLLIDDTYNANPASVGAA 343

Query: 373 LKNIRTITSGRIIVVFGCG 391
           +  ++ I   R +V+   G
Sbjct: 344 IDWLQEIEGNRCLVLGDLG 362


>gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 459

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 169/380 (44%), Gaps = 50/380 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW + ++  V+ DSR+++AG +FV + G ++DGH ++ +A   GA+A + +     +D  
Sbjct: 20  QWGDIEVRSVAFDSRNLEAGGLFVPLKG-EQDGHQYVAKAFENGAKATLWA-----KDHP 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P LVVD+  + L         K    ++AVTG++GK++    V  I       
Sbjct: 74  YDPADGYPRLVVDDPLEALQQLGKYYLNKINPIVVAVTGSNGKTTTKDMVASIL------ 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH------GLDQH 197
           + Q+    T ++F  +N +  P                VT +++EA++       G+D+ 
Sbjct: 128 ATQMNVIKTYANF--NNEIGVP----------------VTLLNMEANTEAVVVEMGMDRF 169

Query: 198 -RLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +LD +  +        T +G  HI++  ++    +AKM +   L   E    +Y  D  
Sbjct: 170 GQLDLLSRLTTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGL--AEDGTFVY--DGD 225

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQ 311
              + +RA     +  + G Q     L       +   V+ +V +  D  F  PL GE+ 
Sbjct: 226 EPLLRERAAKLSQQTKTFGRQLD-DDLYATSVNPDVDHVSFTVNQWPDEVFTIPLVGEYN 284

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V NAL A  +   + +  A + + L+ + +   R E+V   + G RI  D Y     +++
Sbjct: 285 VNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVA-GANGERILSDVYNSNPTAVK 343

Query: 371 MILKNIRTI-TSGRIIVVFG 389
            +L  + TI  +G+ + V G
Sbjct: 344 EVLATLATIPVAGKRVAVLG 363


>gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           CECT 5716]
          Length = 459

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 169/380 (44%), Gaps = 50/380 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W + ++  V+ DSR+++AG +FV + G ++DGH ++ +A   GA+A + +     +D  
Sbjct: 20  KWGDIEVRSVAFDSRNLEAGGLFVPLKG-EQDGHQYVAKAFENGAKATLWA-----KDHP 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P LVVD+  K L         K    ++AVTG++GK++    V  I       
Sbjct: 74  YDPADGYPRLVVDDPLKALQQLGKYYLNKINPVVVAVTGSNGKTTTKDMVASIL------ 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH------GLDQH 197
           + Q+    T ++F  +N +  P                VT +++EA++       G+D+ 
Sbjct: 128 ATQMNVIKTYANF--NNEIGVP----------------VTLLNMEANTEAVVVEMGMDRF 169

Query: 198 -RLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +LD +  +        T +G  HI++  ++    +AKM +   L   E    +Y  D  
Sbjct: 170 GQLDLLSRLTTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGL--AEDGTFVY--DGD 225

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQ 311
              + +RA     +  + G Q     L       +   V+ +V +  D  F  PL GE+ 
Sbjct: 226 EPLLRERAAKLSQQTKTFGRQLD-DDLYATSVNPDVDHVSFTVNQWPDEVFTIPLVGEYN 284

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V NAL A  +   + +  A + + L+ + +   R E+V   + G RI  D Y     +++
Sbjct: 285 VNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVA-GANGERILSDVYNSNPTAVK 343

Query: 371 MILKNIRTI-TSGRIIVVFG 389
            +L  + TI  +G+ + V G
Sbjct: 344 EVLATLATIPVAGKRVAVLG 363


>gi|315226730|ref|ZP_07868518.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
 gi|315120862|gb|EFT83994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
          Length = 549

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 209/474 (44%), Gaps = 76/474 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TS 124
           A+A+ +    + +DFS+  ++    ++V + R+ L+L ++  YG  P + L V G   T 
Sbjct: 86  ADALGLPCYVAQEDFSSATKALG--IIVTDVRQALALLSAAFYGD-PASQLKVVGITGTK 142

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS---------FAQDNRLTTPSPIYLAKALS 175
           GK++ A F   I     LS++  G  + +SS         F + N LTTP  + L + + 
Sbjct: 143 GKTTTAYFTHAI-----LSAYSGGKAALLSSVDNCVDGTTFTESN-LTTPESLDLYRMMR 196

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+ ++ +E SS      R+ G+++  G+F N+  DHI    H T + YF  K   
Sbjct: 197 QAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCK--- 253

Query: 234 FEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV--GYQGKFIH----------L 279
             ++       ++ A  A++  V +  RAH AG     +  G  G   H          L
Sbjct: 254 -RQIAANSDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASL 312

Query: 280 KKVCAIHNKQQVTISV---EGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDS----- 329
             V A       T+     +G+ F  DF   + G+F   NA  A  +  ++G+D      
Sbjct: 313 PTVTASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAI 372

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIV 386
           A  LE +EK+  + GR E   ++ +G    VDYAH   S   +L  +         RII+
Sbjct: 373 AQALEAMEKV-TISGRMETF-SSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIIL 430

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---------RAEIIHGIP 437
           V G  G++   +R  + + A D     I T+++  +E  E+I           ++ HGI 
Sbjct: 431 VTGSAGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGI- 489

Query: 438 GFIEKGNRI-EAIRTAIEMLNK--QDVLVVAGKGHE------TVHIVTNGEKKM 482
             +++ + + EA+R A     +    V++  GKG+E        H+   G+ K+
Sbjct: 490 -VLDRTHALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKV 542


>gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 457

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 20  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 73  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345

Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421
           +   ++  G+ I V G     G D     + +   +A D         +++A + D    
Sbjct: 346 SFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 405

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  P  I +          +K  + E I    ++L  +D++V+ G
Sbjct: 406 TYTPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 441


>gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0043]
 gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF]
          Length = 474

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 363 SFSKMSKVGKRIAVLG 378


>gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0031]
          Length = 474

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 363 SFSKMSKVGKRIAVLG 378


>gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 457

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 20  QWSDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 73  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 346 SFSKMSKVGKRIAVLG 361


>gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 457

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 20  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 73  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345

Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421
           +   ++  G+ I V G     G D     + +   +A D         +++A + D    
Sbjct: 346 SFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 405

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  P  I +          +K  + E I    ++L  +D++V+ G
Sbjct: 406 TYAPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 441


>gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0630]
          Length = 474

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWSDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 363 SFSKMSKVGKRIAVLG 378


>gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct]
          Length = 487

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAIV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 49  IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 98

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +       
Sbjct: 99  IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 152

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 153 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 201

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L + L P++   I+  DD            K++ 
Sbjct: 202 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 260

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+          A  N     I +  +++D+  P  G+  ++N+++
Sbjct: 261 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVL 310

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +A+G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++ 
Sbjct: 311 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLA 370

Query: 378 TITSGRIIVV 387
                +I+ +
Sbjct: 371 EFDGKKILAI 380


>gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
 gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
          Length = 474

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421
           +   ++  G+ I V G     G D     + +   +A D         +++A + D    
Sbjct: 363 SFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 422

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  P  I +          +K  + E I    ++L  +D++V+ G
Sbjct: 423 TYTPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 458


>gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0012]
          Length = 474

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421
           +   ++  G+ I V G     G D     + +   +A D         +++A + D    
Sbjct: 363 SFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 422

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  P  I +          +K  + E I    ++L  +D++V+ G
Sbjct: 423 TYAPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 458


>gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 452

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 144/333 (43%), Gaps = 43/333 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  +  I+EV++D+R + AG +FVA+ G + D H F  QA A GA A++VS   +     
Sbjct: 18  QGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA----- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                + P ++V++TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G +
Sbjct: 73  ----CDLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNT 128

Query: 144 SFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  G          +N +  P + + L K   Y        + + A+  G     +   
Sbjct: 129 LYTAGNL--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
           +  A    NL   H++   +      AK  ++   LP+   AI+ AD+            
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGD 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA            F         H  +  T+     + D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA--------NSDFTATNVQITSHGTE-FTLQTPTGNVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL A  L +A+G D A V   L +L  VPGR 
Sbjct: 285 NALAATSLAMAVGADLAAVKAGLAQLQAVPGRL 317


>gi|294787078|ref|ZP_06752332.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
 gi|294485911|gb|EFG33545.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
          Length = 546

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 209/474 (44%), Gaps = 76/474 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TS 124
           A+A+ +    + +DFS+  ++    ++V + R+ L+L ++  YG  P + L V G   T 
Sbjct: 83  ADALGLPCYVAQEDFSSATKALG--IIVTDVRQALALLSAAFYGD-PASQLKVVGITGTK 139

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS---------FAQDNRLTTPSPIYLAKALS 175
           GK++ A F   I     LS++  G  + +SS         F + N LTTP  + L + + 
Sbjct: 140 GKTTTAYFTHAI-----LSAYSGGKAALLSSVDNCVDGTTFTESN-LTTPESLDLYRMMR 193

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+ ++ +E SS      R+ G+++  G+F N+  DHI    H T + YF  K   
Sbjct: 194 QAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCK--- 250

Query: 234 FEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV--GYQGKFIH----------L 279
             ++       ++ A  A++  V +  RAH AG     +  G  G   H          L
Sbjct: 251 -RQIAANSDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASL 309

Query: 280 KKVCAIHNKQQVTISV---EGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDS----- 329
             V A       T+     +G+ F  DF   + G+F   NA  A  +  ++G+D      
Sbjct: 310 PTVTASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAI 369

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIV 386
           A  LE +EK+  + GR E   ++ +G    VDYAH   S   +L  +         RII+
Sbjct: 370 AQALEAMEKV-TISGRMETF-SSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIIL 427

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---------RAEIIHGIP 437
           V G  G++   +R  + + A D     I T+++  +E  E+I           ++ HGI 
Sbjct: 428 VTGSAGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGI- 486

Query: 438 GFIEKGNRI-EAIRTAIEMLNK--QDVLVVAGKGHE------TVHIVTNGEKKM 482
             +++ + + EA+R A     +    V++  GKG+E        H+   G+ K+
Sbjct: 487 -VLDRTHALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKV 539


>gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
 gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
          Length = 458

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 151/359 (42%), Gaps = 57/359 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS+D+R IQ G ++V + G K DGH F+  A+ +GA A++ S          +  ++
Sbjct: 27  VHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKGASAVLWSET------EGSPPAD 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142
            P++VVD+T + L   A R   +    ++ +TG++GK++    V        ++ +  G 
Sbjct: 81  VPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKDIVAALLATTYKVQKTEGN 140

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  IG   T+    +D  +                      V +  S+ G  +   +  
Sbjct: 141 LNNHIGVPLTLLRLEEDVEMAV--------------------VEMGMSNFGEIELLSNIA 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A   TN+G  H+    +++    AK+ +   L  K++   +Y  D    E +  +  
Sbjct: 181 EPDAAIITNIGESHLQELGSREGIAQAKLEILSGL--KKNGLFVYNGD----EPLLASRV 234

Query: 263 AGC----RVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           A       VL+ G      Y  + +HL+      N    TI  +  +  F  P+ G+  V
Sbjct: 235 AHLPLPEHVLTFGQGNKNDYYPESVHLQA-----NGMMFTIR-QAANRSFFLPILGKHHV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           YNAL A  +    G+    V E L +L V   R E + T    G   ++ A+ +N   M
Sbjct: 289 YNALAALAVARFFGVSWENVQEALSRLQVTRMRMEVIETEK--GWTVINDAYNANPTSM 345


>gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
 gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
          Length = 457

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 20  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 73  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 346 SFSKMSKVGKRIAVLG 361


>gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium DO]
 gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
 gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
          Length = 470

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 154/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 41  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 93

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141
           N P++ V +  K +   A+    K    ++A+TG++GK+       SV S   +  +  G
Sbjct: 94  NFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 153

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 154 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+  +   ++ AD+     +     
Sbjct: 198 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLV 252

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 253 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 306 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 364

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 365 TKGRRIAVLA 374


>gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2141]
 gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0645]
          Length = 474

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421
           +   ++  G+ I V G     G D     + +   +A D         +++A + D    
Sbjct: 363 SFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 422

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  P  I +          +K  + E I    ++L  +D++V+ G
Sbjct: 423 TYAPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 458


>gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
          Length = 458

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 162/369 (43%), Gaps = 31/369 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR +Q G+++ A+ G + DGH F+PQA + GA   +VS   +  +  A   ++  +
Sbjct: 15  LSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAHAAV 74

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + VD+  + +S  A+         I+ VTG+ GK++  S +  +      S+F+     T
Sbjct: 75  VKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLA----SAFE--ADCT 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIA----G 207
             +F  +N L  P         + L ++    V V E    GL Q  +  +  IA    G
Sbjct: 129 KGNF--NNELGMP--------YTLLQTEPSCEVLVLEMGMDGLGQ--IADLARIARPKYG 176

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGC 265
             TN+G  H++   T+     AK  + E L   E  A + AD  Y+  +++  RA   G 
Sbjct: 177 VITNVGVSHLERLGTRDNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGI 236

Query: 266 RVLSVG--YQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           R++      +   ++   +      +   T++  G+       + G   V NA  AA + 
Sbjct: 237 RIVRFDGTAENSDVYATDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVG 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT- 380
           +  GI    V   L  +    GR + +  +SRG  ++ D Y  +  S+   L  + + + 
Sbjct: 297 LEFGIALDQVAAALSGVEPESGR-QALKRSSRGFLVFDDAYNASPESMAAALNVLASFSA 355

Query: 381 SGRIIVVFG 389
           SGR I V G
Sbjct: 356 SGRRIAVLG 364


>gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
 gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
          Length = 452

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 144/333 (43%), Gaps = 43/333 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  +  I+EV++D+R + AG +FVA+ G + D H F  QA A GA A++VS   +     
Sbjct: 18  QGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA----- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                + P ++V++TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G +
Sbjct: 73  ----CDLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNT 128

Query: 144 SFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  G          +N +  P + + L K   Y        + + A+  G     +   
Sbjct: 129 LYTAGNL--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
           +  A    NL   H++   +      AK  ++   LP+   AI+ AD+            
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGD 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA            F         H  +  T+     + D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA--------NSDFTATNVQITSHGTE-FTLQTPTGNVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL A  L +A+G D A V   L +L  VPGR 
Sbjct: 285 NALAATSLAMAVGADLAAVKAGLAQLQAVPGRL 317


>gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Enterococcus sp. 7L76]
          Length = 457

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 20  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 73  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 346 SFSKMSKVGKRIAVLG 361


>gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 452

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAIV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +       
Sbjct: 73  IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L + L P++   I+  DD            K++ 
Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+          A  N     I +  +++D+  P  G+  ++N+++
Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVL 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +A+G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++ 
Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLA 344

Query: 378 TITSGRIIVV 387
                +I+ +
Sbjct: 345 EFDGKKILAI 354


>gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4000]
 gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0017]
 gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0027]
 gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4244]
 gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0312]
 gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1302]
 gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1341]
 gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309B]
 gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309A]
 gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1467]
          Length = 474

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 363 SFSKMSKVGKRIAVLG 378


>gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
 gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
          Length = 452

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 141/327 (43%), Gaps = 43/327 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+EV+SD+R + AG +FVA+ G + D H F  QA A GA A++VS   +          +
Sbjct: 24  IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA---------CD 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                    +N +  P + + L K   Y        + + A+  G     +   +  A  
Sbjct: 135 L--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLTRPEAAL 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKR 259
             NL   H++   +      AK  ++   LP+   AI+ AD+            ++V + 
Sbjct: 181 VNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGDRKVWRF 239

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + NA            F         H   + T+     + D L PLPG   + NAL A 
Sbjct: 240 SPNAA--------NSDFTATNVQITSHGT-EFTLQTPTGNVDVLLPLPGRHNIANALAAT 290

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346
            L +A+G D A V   L +L  VPGR 
Sbjct: 291 SLAMAVGADLAAVKAGLAQLKAVPGRL 317


>gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
 gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
          Length = 450

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 152/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 21  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141
           N P++ V +  K +   A+    K    ++A+TG++GK++       +        +  G
Sbjct: 74  NFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+  +   ++ AD+     +     
Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLV 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 345 TKGRRIAVLA 354


>gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
 gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
          Length = 473

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 163/376 (43%), Gaps = 42/376 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI  +  F +       + +S DSR +  G IF  I G+  DGH F  QA A+GA 
Sbjct: 6   DKQALIAAIDGFVIGCMPETFSGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQAYARGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V+    L D     + + P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLIVAEN-RLTDME---KISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q+    G     +   +               P+ LA+ +   S  G+  + +  
Sbjct: 122 KEALKQVLATVGKVHANLASLNNCWGV----------PLTLAR-MPVESDYGIFEIGM-- 168

Query: 190 SSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            +H  +   L  +KL+       T++   H+ + +  +   +AK  +FE  L +E  A++
Sbjct: 169 -NHADEIRPL--VKLVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEG-LDEEGVALL 224

Query: 247 YADDAYSKEVMKRAHNAGC-RVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            AD+ +   ++++A   G  ++LS G      YQ + I L+      +   + + + G++
Sbjct: 225 NADNGFFSYLVRKAKQCGVKKILSFGEAENSDYQARNIRLRT-----DFSSMIVHIGGQE 279

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGG 356
                  PG   V N+L     C  IGID A V   L +  +  G   R++    N  GG
Sbjct: 280 KVIKIGAPGRHIVQNSLAVIAACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPN--GG 337

Query: 357 RIY-VDYAHTSNSLEM 371
             + +D ++ +N   M
Sbjct: 338 EFHLIDESYNANPASM 353


>gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1346]
          Length = 474

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGDLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 363 SFSKMSKVGKRIAVLG 378


>gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
 gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
          Length = 457

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 157/373 (42%), Gaps = 46/373 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA---YSLQDFSAT 85
           + + + +D+R I    +FVA+ G K DGH FI QA++ G  A++V  A   Y   D++  
Sbjct: 26  RYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQAVSLGTTAVIVDDAGRLYPDGDYT-- 83

Query: 86  IRSNTPILVVDNTRKF---LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 I VV NT K    L+L+  R +   P  ++AVTG+ GK+S  S +  +      
Sbjct: 84  ------IFVVKNTLKAYQDLALYHRRRFAI-P--VVAVTGSVGKTSTRSLIATVL----- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            S +     T  +F  +N +  P  +     L      G   V +     G  +   D  
Sbjct: 130 -SQKYNVLQTEKNF--NNEIGLPRTL-----LQLTGEHGACVVEMGMRGLGQIKELADIA 181

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G  TN+G+ HI+   +Q     AK  L E  L  +  A++  DD   K V   A  
Sbjct: 182 EPTIGVVTNVGKSHIELLGSQANIAKAKGELVEA-LGTDGTAVLNGDD---KRVAAMAEK 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVA 318
              + +S G +     +        K    IS   + FD +      + G   VYNAL A
Sbjct: 238 CKGKTVSFGIKENAPVMAGAIKTDEK---GISFTCRCFDQVMDVHMSVLGRHNVYNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
             +   +G+    + + L +   VP R E +         +++ A+ +N  S+   +  +
Sbjct: 295 VAVGRLLGMSEHQMQKGLAEYKGVPMRQELIHLED---LTFINDAYNANPASMAEAVHTL 351

Query: 377 RTITSGRIIVVFG 389
            ++ SGR I V G
Sbjct: 352 MSVASGRKIAVLG 364


>gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6]
          Length = 457

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 20  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 73  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 346 SFSKMSKVGKRIAVLG 361


>gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
 gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
          Length = 452

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 141/327 (43%), Gaps = 43/327 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+EV+SD+R + AG +FVA+ G + D H F  QA A GA A++VS   +          +
Sbjct: 24  IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA---------CD 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                    +N +  P + + L K   Y        + + A+  G     +   +  A  
Sbjct: 135 L--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLTRPEAAL 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKR 259
             NL   H++   +      AK  ++   LP+   AI+ AD+            ++V + 
Sbjct: 181 VNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGDRKVWRF 239

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + NA            F         H  +  T+     + D L PLPG   + NAL A 
Sbjct: 240 SPNAA--------NSDFTATNVQITSHGTE-FTLQTPTGNVDVLLPLPGRHNIANALAAT 290

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346
            L +A+G D A V   L +L  VPGR 
Sbjct: 291 SLAMAVGADLAAVKAGLAQLKAVPGRL 317


>gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
 gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
          Length = 474

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHHFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421
           +   ++  G+ I V G     G D     + +   +A D         +++A + D    
Sbjct: 363 SFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 422

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  P  I +          +K  + E I    ++L  +D++V+ G
Sbjct: 423 TYAPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 458


>gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
          Length = 450

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 154/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 21  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141
           N P++ V +  K +   A+    K    ++A+TG++GK+       SV S   +  +  G
Sbjct: 74  NFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+  +   ++ AD+     +     
Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLV 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 345 TKGRRIAVLA 354


>gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
 gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
          Length = 474

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKNTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 363 SFSKMSKVGKRIAVLG 378


>gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 452

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 156/385 (40%), Gaps = 56/385 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS +S  +    +FVAIV N+ DGH FIP AIA GA+A++VS     QD       N
Sbjct: 23  IQTVSINSNEVNQDALFVAIVANR-DGHEFIPSAIANGAKALLVSKK---QDI------N 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV------QQICQRSGLS 143
            P +V +NT K L   A          I+++TG+ GK++V   +      +++    G  
Sbjct: 73  IPQVVCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVKEMIVTLLGGKKVHFTQGNF 132

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  +G   T+        L TP  +  A   +  S  G    + E             I+
Sbjct: 133 NNYLGVPMTV--------LETPQDVDFAVIETGTSVAGEIKAAAEI------------IQ 172

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---------YADDAYSK 254
                 TN+G  H++  +T       K  L +  LPK+   I+         YAD    K
Sbjct: 173 PNVAMITNVGASHLENLKTLDGVMIEKGELLKA-LPKDGVCIVNLDDERIPAYADKLDCK 231

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++     N    ++ + YQ                 V I +  K++ +  P  G+  + N
Sbjct: 232 KITCSMSNQDADIIILDYQ----------VTPELYDVKIRIFNKEYSYQLPNIGKHNLSN 281

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +++A    +A G++    L++ + +    GRF     N +   +   Y  ++ +++  + 
Sbjct: 282 SMLAIASVVAAGLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIA 341

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKR 399
           ++      ++I +       D+G+ 
Sbjct: 342 DLAEFDGKKVIAITSMRELGDEGEN 366


>gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
 gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
          Length = 450

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 154/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 21  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141
           N P++ V +  K +   A+    K    ++A+TG++GK+       SV S   +  +  G
Sbjct: 74  NFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+  +   ++ AD+     +     
Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLV 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
               G+    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 345 TKGRRIAVLA 354


>gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2137]
          Length = 474

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 363 SFSKMSKVGKRIAVLG 378


>gi|163814275|ref|ZP_02205664.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759]
 gi|158449910|gb|EDP26905.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759]
          Length = 255

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 17/241 (7%)

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISVEGKDFDFLFPLPGEFQVYNALV 317
           G +V+  G Q ++ H      I N Q         +S  G+       L G+F   N   
Sbjct: 12  GVKVILFG-QKQYDHDPADAVIGNVQMGMSGLTFELSYRGRTDTIHTNLVGKFNAENITA 70

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           AA   + +G+D   V   +++L  +PGR  FV  N R   + +DYAH   S   + + IR
Sbjct: 71  AALAALELGVDIDTVKSSVKEL-FIPGRLNFVEANGR--HVIIDYAHNHMSYSSLFRTIR 127

Query: 378 TI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---I 433
           +I  + R+  + G  GD+  G+R   G++    AD  ++T+ +  SE P KI +EI   +
Sbjct: 128 SIYPTDRLTALVGAMGDKAFGRRREAGQMTNVYADRVVITEQDSGSEHPAKIGSEIARYV 187

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE-TVHIVTNGEKKMSVDCDIIREI 492
           H +   + +  R  AIR  ++  +  DV+V+ GKG E T+ +  N  +  + D +I++  
Sbjct: 188 HKLCKIVPR--REAAIRYILDKSDPGDVIVLTGKGAEKTLRVGRNSVRPYAGDLEIVKAW 245

Query: 493 L 493
           L
Sbjct: 246 L 246


>gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 457

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 20  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHHFIESAMANGCQA-----AFWGQDL- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 73  VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 346 SFSKMSKVGKRIAVLG 361


>gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 455

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 157/371 (42%), Gaps = 33/371 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +  I  VS DSR ++ G +FV ++ +  DGH F+  A   GA A +    +  +   
Sbjct: 19  QYDQITITSVSFDSRSLEQGALFVPLIASN-DGHEFVEAAKQNGACAALWQKDHENR--- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P+L+VD+T + L         K    ++A+TG++GK++    +  +       
Sbjct: 75  ---PQGIPLLIVDDTLEALQKIGKYYLQKINPKVVAITGSNGKTTTKDMIAAVL------ 125

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           S Q     T  +F  +N +  P  +     LS   +  +  V +     G   H +  + 
Sbjct: 126 STQFNVAKTHDNF--NNHIGVPMTV-----LSMEPNTEILVVEIGMDHFGELDHLVHLLD 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  HI++ +T+    +AKM +   L  KE   ++Y  D     +++RA   
Sbjct: 179 PDVAVITMIGEAHIEFFKTRDRIADAKMEITHAL--KEDGLLVYNGD--EPLLIERAEKL 234

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLC 322
                + G  G  + L+    + + ++ +  V +  + +F  P+ G + V NAL  A LC
Sbjct: 235 DFETKTFG-TGANVDLQAQNIVSDAEKTSFRVKQWPELNFTIPMIGAYNVKNAL--AALC 291

Query: 323 IA--IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           +     ID   +++ LE   +   R E+V   S G  I  D Y     +   +L   +  
Sbjct: 292 VGSEFQIDPRSMVKALEHFDLTRNRTEWVKA-SNGADILSDVYNSNPTACAEVLTAFQNA 350

Query: 380 -TSGRIIVVFG 389
            T+GR   V G
Sbjct: 351 ETTGRRYAVLG 361


>gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 456

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 55/387 (14%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    + ++  V +DSR  + G +FV IVG + D H FIPQ +  GA A +        D
Sbjct: 20  PADKLQEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFIPQVMEAGALATLSERVLDNAD 79

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           F        P + V+++ + +   A     +    ++ +TG+ GK+S    +  +  +  
Sbjct: 80  F--------PYIAVESSLQAVKDIAEFYLKQLQIPVVGITGSVGKTSTKEVIASVLNQ-- 129

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +F  +N L  P  ++  +         +  + +  S  G +  RL  
Sbjct: 130 ----KYHTLKTQGNF--NNELGLPLTVFRLR-----DGDEIAVLEMGISDFG-EMTRLAQ 177

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-------AYS 253
           I +      TN+G  H++    +     AK  +F+ L P E   ++  DD        Y 
Sbjct: 178 IARPDTCVITNIGTCHLENLGDRNGVLKAKTEIFKFLRP-EGHIVLNGDDDKLITVKEYE 236

Query: 254 K------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           K       +       G +++S G +G        C IH        +    F    P+P
Sbjct: 237 KIKPVFFGMSNECQVYGDKIVSRGLKG------MTCTIH--------LGDTAFTVDIPMP 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   VYNAL AA +    G+ +  +   +E L  + GRF  + T+     + VD  + +N
Sbjct: 283 GRHMVYNALAAAAVGNIYGLTTDQIKAGIESLEPISGRFRMIETDK---FLIVDDCYNAN 339

Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGD 393
            + M    ++    +GR I V G  G+
Sbjct: 340 PMSMKASLDVLQDGAGRKIAVLGDMGE 366


>gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1342]
          Length = 474

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P+L V +    +   A+    K   N++AVTG++GK++    +  +       
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149

Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G  + QIG P + +    +  +L     +  A+ +S+LS+     V+         
Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                       + T +G  H++   ++     AKM + + L  K+    + +D+   + 
Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++++      +V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NA
Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVINEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A G+     +  + + + L    +   R E++   + G  I  D Y     ++ ++L 
Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362

Query: 375 NIRTITS-GRIIVVFG 389
           +   ++  G+ I V G
Sbjct: 363 SFSKMSKVGKRIAVLG 378


>gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
 gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
          Length = 465

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 159/370 (42%), Gaps = 26/370 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W +R+I  V+ D+R +    +FV ++GN  DGH FI +A+  GA   + S    L+D  
Sbjct: 22  KWSDREITSVNFDTRKLVKDSLFVPLLGNN-DGHNFILKAVENGAAVSLWSKP--LKDLP 78

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             + +  PI+ V++T K L   A     K    ++ +TG++GK++       +      S
Sbjct: 79  LELENEFPIVQVNDTLKALQDLAKFYLTKVNPKVVGITGSNGKTTTKDMADAVLS----S 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            +++  T    +F  +N +  P  I     L       V  + +  S  G  +   D  K
Sbjct: 135 QYRVHKTQ--GNF--NNHIGLPITI-----LEMPIETEVVILEMGMSRAGEIKVLSDLAK 185

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHN 262
                 T +G  HI++  ++    +AKM +   L  KE+  +IY  ++   +E +     
Sbjct: 186 PDVAIITMIGESHIEFFGSRAGIADAKMEICSGL--KENGVLIYPGEEPLLQERVAVLKG 243

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AG 320
           +  +      +     L     ++  Q   ++ E  D     P+ G + V NAL A  AG
Sbjct: 244 SQLKTFGTSPENDLYPLNIDAQMN--QTSFVTNERPDLVVSLPVLGTYNVNNALAALMAG 301

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + + I I+ +     L +  +   R E++   +    +   Y     +++ +L N  T T
Sbjct: 302 MTLGISIEKS--APKLAQFQLTKNRTEWLKGINESSILNDAYNANPTAMKAVLDNFSTFT 359

Query: 381 -SGRIIVVFG 389
            +G+ IVV G
Sbjct: 360 NTGKKIVVLG 369


>gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
 gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
          Length = 437

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 130/302 (43%), Gaps = 36/302 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R +Q G IF+A+ G K DGH F+  AIA+GA A +V   Y   D+      N P+
Sbjct: 33  IQTDTRVLQPGEIFLALGGEKFDGHQFVEMAIARGAVAAIVDYTY---DY-----PNLPV 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V NT       A    G+    ++ VTG+ GK++    +  +    G          T
Sbjct: 85  IKVSNTLNAYQELAKWWRGQFGIPVIGVTGSVGKTTTKELIASVLGTRGKVH------KT 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFT 210
             +F  +N +  P      K L  L S+G     +E +  G  Q   L  I K   G  T
Sbjct: 139 YGNF--NNEIGVP------KTLLEL-SEGDDFAVIEMAMRGRGQIGELTHIAKPNIGVIT 189

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   ++QA   AK  L  E +P +S A++  D+       K+  +    V+S 
Sbjct: 190 NVGTAHIELLGSEQAIAEAKCELLAE-MPNDSVAVLNYDNPLLMTTAKQVWSG--EVISY 246

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G+ G  I  K V    + Q++ +           PL G     N L A  +   + +D  
Sbjct: 247 GFSGGDIQGKLV----DYQKIEVG----GMTLPLPLTGVHNGSNFLAALAVAKVLDVDWK 298

Query: 331 LV 332
           L+
Sbjct: 299 LL 300


>gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
          Length = 457

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V+    S    S +I  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGAVAVVIQQENS----SISI-- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +  SS  + 
Sbjct: 78  --PQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAASSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDVWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSSQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
 gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
          Length = 452

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 141/327 (43%), Gaps = 43/327 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+EV+SD+R + AG +FVA+ G + D H F  QA A GA A++VS   +          +
Sbjct: 24  IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA---------CD 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                    +N +  P + + L K   Y        + + A+  G     +   +  A  
Sbjct: 135 L--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLTRPEAAL 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKR 259
             NL   H++   +      AK  ++   LP+   AI+ AD+            ++V + 
Sbjct: 181 VNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGDRKVWRF 239

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + NA            F         H  +  T+     + D L PLPG   + NAL A 
Sbjct: 240 SPNAA--------NSDFTATNVQITSHGTE-FTLHTPTGNVDVLLPLPGRHNIANALAAT 290

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346
            L +A+G D A V   L +L  VPGR 
Sbjct: 291 SLAMAVGADLAAVKAGLAQLKAVPGRL 317


>gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
          Length = 458

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 169/407 (41%), Gaps = 62/407 (15%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W E  +  ++SDSR    G +FV IVG + DGH FIP  +  GA A +         F 
Sbjct: 24  RWTE--VTAITSDSRQAAPGCLFVPIVGERVDGHSFIPNVMEAGALATLSQKELPEARFP 81

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             I+  + +  V +  KF   +  +L  K P  ++ +TG+ GK+S    +  + +     
Sbjct: 82  -YIQVASSLQAVKDIAKF---YLEQL--KIP--VVGITGSVGKTSTKEVIASVLK----E 129

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            + I    T  +F  +N L  P  ++  +    ++   +        S   D  R D   
Sbjct: 130 KYHI--LKTQGNF--NNELGLPLTVFRLRDYHEIAVLEMGISDFGEMSRLADIARPDTCV 185

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKE 255
           +     TN+G+ H+++   +     AK  +F   L +   AI+  DD           KE
Sbjct: 186 I-----TNIGQCHLEFLGDRDGVLKAKTEVF-RYLKEGGRAILNGDDDKLATIRQVQGKE 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +    N    V +   Q +   LK + C IH  +         +F    P+PG+  VYN
Sbjct: 240 PIFFGMNPAFPVYADQIQSR--GLKGMSCRIHLPE--------AEFAVEIPMPGQHMVYN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM--- 371
           AL AA + +  G+    +   +E L  + GRF  + T+     + VD  + +N + M   
Sbjct: 290 ALAAAAVGMVHGLTPEQIRRGIESLEPISGRFRMIETDH---FLIVDDCYNANPVSMKAS 346

Query: 372 --ILKNIRTITSGRIIVVFGCGGDRDQGKRPI-------MGKIALDL 409
             +LK+      GR + + G  G+  + ++ +        G+  LDL
Sbjct: 347 LDVLKD----ALGRKVAILGDMGELGEQEKELHAEVGDHAGRCGLDL 389


>gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 462

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 161/370 (43%), Gaps = 42/370 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S  S  I+   IF+A++GN+ DGH F+ QA+  GA+A++V+   SL         +
Sbjct: 24  INTISIHSDLIEEQCIFIALIGNRYDGHDFVEQAVMAGAKALLVNRYVSL---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR  L   A  +  +    I+A+TG+SGK+SV      I +  G        
Sbjct: 75  IPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKTSVKEMTASILKECG-------- 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS- 208
            + I++    N     S   L   L+Y    G+    VE  S+ L +  L  +  I G+ 
Sbjct: 127 -TVIATQKNYNNFIGVSITLL--KLTY----GIDFAVVELGSNKLGE--LKKLGEIVGAD 177

Query: 209 ---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-----KEVMKRA 260
                N+   H+    +       K ++F  +    + A+I   D+YS       ++   
Sbjct: 178 VALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVINL-DSYSFVQGNSILLNFK 236

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                 +   G    F     +   H  +    S  G    F+ P+ G   + N L A+ 
Sbjct: 237 KKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPIFM-PILGIHNISNILAASA 295

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRT 378
           L  A+G   + ++  L+K++ +PGR F F+   +RG    +D  + +N   MI   N+ +
Sbjct: 296 LSFAVGASLSNIVHGLQKMNALPGRLFPFI--LNRGKLCLIDDTYNANIGSMIAAINVLS 353

Query: 379 ITSG-RIIVV 387
              G RI+VV
Sbjct: 354 FMPGYRILVV 363


>gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 458

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 170/389 (43%), Gaps = 58/389 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA+ G   DGH F+ +A  QGA   +VS A +           
Sbjct: 24  VSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKAFGQGAAGAIVSEAIA----------Q 73

Query: 90  TPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSV--ASF--VQQIC----Q 138
             +LV D+     +L     +R+ GK    ++ VTG+ GK+    A F  + +IC     
Sbjct: 74  PHVLVPDSAAALEALARASRARMQGK----VVGVTGSVGKTGTKEALFHALDRICPGEVH 129

Query: 139 RSGLSSF--QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           RS + S+   +G   ++S   +++        +  A  L+ L+ Q   HV++        
Sbjct: 130 RS-VKSYNNHVGVPLSLSRMPRESAYGVFEMGMNHAGELAALTRQVRPHVAI-------- 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                         T +   HI++  T++    AK  +FE L P  +  I Y D  +   
Sbjct: 181 -------------VTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPY-DSPHVAT 226

Query: 256 VMKRAHNAGCRVLSVGY-QGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  +A     R+L+ G+  G  +H ++ V A      VT ++ G +  F    PGE  V 
Sbjct: 227 LYAKAEKHAARILTFGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVS 286

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM- 371
           NAL       A+G D A     L ++  +PGR E       GG  + +D ++ +N L M 
Sbjct: 287 NALAVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSMA 346

Query: 372 -ILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             LK +    +GR I V   GG R+ G R
Sbjct: 347 ATLKQLGREQAGRRIAVL--GGMRELGDR 373


>gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
          Length = 455

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 39/328 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  V SDSR I    +FVA+ G + DGH F   A+  GA A++V+    L       
Sbjct: 21  DTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLAVENGANALLVTHELPL------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P L+V +T+K +    + L        +A+TG++GK+SV   V  I  +     + 
Sbjct: 74  --DLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKTSVKEMVATILSQRHKVLYT 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G      +F  +N +  P  +     L      GV  +   A+  G   +    +K   
Sbjct: 132 AG------NF--NNEIGVPLTLL---RLEEGDEFGVFELG--ANHRGEIDYTSSLVKPDV 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+   H++   +      AK  +F  L P +  A+I ADD++++ VMK A +   +
Sbjct: 179 ALVNNVASAHLEGFGSLAGVAAAKSEIFNHLSP-DGTAVINADDSFAR-VMKEAASEHKQ 236

Query: 267 VL-----SVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +      +   QG  +    L + C         +S   ++     PL G  QV NAL A
Sbjct: 237 LTFAIEAAADLQGSGLEPDLLGRYC-------FKMSYLNQEVSVTLPLSGRHQVSNALAA 289

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           AG+C+ +G+  + ++  L  L  V GR 
Sbjct: 290 AGICLTLGLPLSEIVSGLSLLEPVKGRM 317


>gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum EA 2018]
          Length = 455

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 183/395 (46%), Gaps = 41/395 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L + +  + +N   I  ++  +   N+VS D+R +  G IF+AI G   +G+ FI  
Sbjct: 1   MENLTFNEIAKAVNGKVI--LRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHN 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA   +V   +  +D   + + +  IL+V++T+K L   A          ++A+TG
Sbjct: 59  AVQKGAALCIVDEIHFEKD---SFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQ 180
           ++GK+S       + +    S F++  TS   +F  +N +  P  I+ L K+    +   
Sbjct: 116 STGKTSTKDITASVLR----SKFRVFKTS--GNF--NNEIGLPLMIFKLDKSYEVAVLEM 167

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+ H +     H + +     I LI    TN+G  HI+  ++++    AK+ +  +   K
Sbjct: 168 GMNHFN---EIHNMAKAARPDIALI----TNIGISHIENLKSRENILKAKLEI-TDFFTK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++  I+  D+    +++K+       VL  S+  +G  ++ + +C      +  +  E  
Sbjct: 220 DNLLIVNGDN----DLLKKHEFKSINVLKTSLNKEGN-LNAENLCLHEGNSEFEVQGE-- 272

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGR 357
               +  +PG+  + NA+++    + +G+    + + L+ L +   R + V G N     
Sbjct: 273 --KLVLNMPGKHNIENAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLDIVNGENI---- 326

Query: 358 IYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFGC 390
           + VD ++ ++   MI  +   + +   R I V G 
Sbjct: 327 VIVDDSYNASPDSMIAAIDVTKNLKGNRRIAVLGT 361


>gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 458

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 192/456 (42%), Gaps = 52/456 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW   ++  V+ D+R ++ G +FV + GN+ DGH FI QA   GA A + +SA   Q   
Sbjct: 20  QWATVEVTSVAFDARELRPGALFVPLAGNR-DGHDFINQARENGAVATLWASARDDQP-- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               ++ P+L+V +        A R   K    ++A+TG++GK++       +      S
Sbjct: 77  ----TDFPVLLVKDPLAAYQQLAKRYLLKINPKVVAITGSNGKTTTKDMTAAVLG----S 128

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRL 199
            + I  T   ++F  +N +  P  I        LS +  T + V     G+D+    H L
Sbjct: 129 QYNIHKTQ--ANF--NNEIGVPQTI--------LSMEANTEILV--IEMGMDRPGQLHAL 174

Query: 200 DGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             I +    + T +G  HI++ +T+    +AKM + + L  KE   ++Y  D     + +
Sbjct: 175 SEIAMPDVAAITMIGEAHIEFFKTRDKIADAKMEITDFL--KEDGLLVY--DGDEPLLNE 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R  +                + +V A   K Q  ++    D  F  P+ G + V NAL A
Sbjct: 231 RVGDLERETFGSATTNTLYPI-QVRAGETKTQFKLNA-WPDVAFEIPMMGAYNVNNALAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
             +     I   ++ + L    V   R E+ VGT   G R+  D Y     +   +L+N 
Sbjct: 289 ILIGQHYHIKPEVMSKALANFEVTRNRTEWLVGT--AGQRMLSDVYNSNPTAAIEVLRNF 346

Query: 377 RTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV----TDDNPRSEDPEKIR 429
               T GR I V G   +     + +   +A  LD A I  V    T+  P  +    I 
Sbjct: 347 SHFETDGRRIAVLGDMLELGTASKKLHESLATVLDPAQIQEVYLFGTEIKPLFDKLATIY 406

Query: 430 -AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AE +H    + EK  + E I    E +   D++V+
Sbjct: 407 PAEQLH----YFEKTQQPELITALAETIQPSDLVVL 438


>gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 452

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 138/328 (42%), Gaps = 48/328 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAIV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +  F  G 
Sbjct: 73  IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH-FTKGN 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLIAG 207
                    +N L  P  I         +   V    +EA ++  G  +   D I+    
Sbjct: 132 L--------NNYLGVPMTILE-------TPHDVDFAVIEAGTNVGGEIKAAADIIQPNIA 176

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVMK 258
             TN+G  H++  +T       K  L + L P++   I+  DD            K++  
Sbjct: 177 MITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKISC 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              N    +L + Y+          A  N     I +  +++D+  P  G+  ++N+++A
Sbjct: 236 SMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLA 285

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +A+G++    L++ + +    GRF
Sbjct: 286 IASVVAVGLEPKDFLQNTQNIKNYKGRF 313


>gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
 gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
          Length = 452

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 42/336 (12%)

Query: 6   LIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I ++ P +++           ++ IN++S+DSR IQ   IF+A+ G+K DGH F+ + I
Sbjct: 1   MILREIPTILSGTFQKISQTLSDKSINKISTDSRTIQENDIFIALQGDKFDGHRFVDEVI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVTG 122
            +GA A++V+   S++          P +VV +T       A+  R + K P  I+ +TG
Sbjct: 61  DKGAIALIVNHEVSVKS-----TKEIPQIVVKDTLIAYQEIANWWRNHVKIP--IIGITG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +  +    G          T +++  +N +  P      K L  L++   
Sbjct: 114 SVGKTTTKEIIAAVLGVYG------NVHKTQANY--NNEIGVP------KTLLGLTTNH- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +  +E +  G  +  L  +  IA    G  TN+G  HI    ++QA   AK  L  E +
Sbjct: 159 NYAVIEMAMRGKGEIAL--LSQIACPTIGIITNVGTAHIGRLGSRQAIAEAKCELLAE-M 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P+ S AI+  DD    E          + ++ G +G  I  + +     + Q+ + VEG 
Sbjct: 216 PENSVAILNHDDQRLVETAATVWQG--KTITYGLEGGDITGELL-----ENQI-LRVEG- 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
             DF  PLPG     N L A  +   + +D   ++E
Sbjct: 267 -MDFPLPLPGRHNALNYLAALAVTKELNLDWTFLME 301


>gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mollicutes bacterium D7]
 gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. D7]
          Length = 450

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 133/307 (43%), Gaps = 42/307 (13%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S DSR  + G +++ I+G + DGH FI  A   GA AI+      ++D          ++
Sbjct: 27  SQDSRQAEVGMMYIPIIGERYDGHDFIESAFTNGASAIITDRL--IED------DKHVVI 78

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +VDNT K L   A  L       ++ +TG+ GK+S    V  + ++      Q     T 
Sbjct: 79  LVDNTLKALQKMAHYLRKHRKVKVVGITGSVGKTSTRDMVYSVVKQ------QYKTLKTE 132

Query: 154 SSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----GS 208
            ++  +N +  P  I  L      +   G+ H+           + ++ +  IA     +
Sbjct: 133 GNY--NNNIGLPLTILRLKDEEVMILEMGMNHL-----------NEMEELSRIACPDISA 179

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI    +++    AK+ +    +   S  +I  D+    +++        +V+
Sbjct: 180 ITNVGTAHIGELGSRENILKAKLEIVAG-MSDGSTLVINGDN----DMLSTVRFDNFKVV 234

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            VG         +KV  + +  + TI+  GK +  + P+PG   V NALVA    IAIGI
Sbjct: 235 KVGVDCAAVFKAEKVILMDDHSEFTINYNGKVYQVVVPVPGNHFVLNALVA----IAIGI 290

Query: 328 DSALVLE 334
           +  + +E
Sbjct: 291 NLEIPME 297


>gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
 gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
          Length = 462

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 162/374 (43%), Gaps = 49/374 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS      +FS   +  +
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVSKS 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + ++ V+NT K L   A    GK    ++A+TG++GK+S    V  +        +++  
Sbjct: 83  SYVIKVENTNKALLDLAKYYRGKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I  
Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +++    AK+ +  +   K+S  II  DD    +++    +   +V
Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316
             +G   KF          N   + +  E   FD           F   +PG+  V N+L
Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A      + I+   +   ++ L     R + V    +G  I  D Y  + +S++  +  
Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352

Query: 376 IRTITSGRIIVVFG 389
           ++ I   R I + G
Sbjct: 353 MKNIKGKRTIALLG 366


>gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
 gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
          Length = 452

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 142/326 (43%), Gaps = 34/326 (10%)

Query: 6   LIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  + P ++ N L         + INE+++D+R+I    IF+A+ G+K DGHLF  +AI
Sbjct: 1   MILSEIPNILSNSLKEISQPLSNKLINEINTDTRNITENDIFLALKGDKFDGHLFAEKAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A++++   S+           P ++V +T       A+    K    I+ +TG+ 
Sbjct: 61  DKGAIALILNHKISVNS-----TKKIPQIIVKDTLIAYQEIANWWRNKVKIPIIGITGSV 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +    G          T +++  +N +  P  +    A++      V  
Sbjct: 116 GKTTTKELISAVLGVYGKVH------KTQANY--NNEIGVPKTLL---AITTSDDYAVIE 164

Query: 185 VSVEASSH--GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +++ A      L Q     I    G  TN+G  HI    +++A   AK  L  E +P +S
Sbjct: 165 MAMRARGEIALLSQIACPTI----GIITNVGTAHIGRLGSREAIAEAKCELLAE-MPTDS 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+  DD    E   +      + ++ G +G  I  K    + N+    + V+G   DF
Sbjct: 220 IAILNHDDQRLMETAAKVWQG--KTITYGLEGGDITGK---VLENQ---ILRVKG--MDF 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGID 328
             PLPG     N L A  +   + +D
Sbjct: 270 PLPLPGRHNALNYLAALAVTQQLNLD 295


>gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
 gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
          Length = 452

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 170/367 (46%), Gaps = 39/367 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N+VS D+R +  G IF+AI G   +G+ FI  A+ +GA   +V   +  +D   + + + 
Sbjct: 24  NDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKGAALCIVDEIHFEKD---SFKEDI 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            IL+V++T+K L   A          ++A+TG++GK+S       + +    S F++  T
Sbjct: 81  SILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTKDITASVLR----SKFRVFKT 136

Query: 151 STISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           S   +F  +N +  P  I+ L K+    +   G+ H +     H + +     I LI   
Sbjct: 137 S--GNF--NNEIGLPLMIFKLDKSYEVAVLEMGMNHFN---EIHNMAKAARPDIALI--- 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI+  ++++    AK+ +  +   K++  I+  D+    +++K+       VL
Sbjct: 187 -TNIGISHIENLKSRENILKAKLEI-TDFFTKDNLLIVNGDN----DLLKKHEFKSINVL 240

Query: 269 --SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S+  +G  ++ + +C      +  +  E      +  +PG+  + NA+++    + +G
Sbjct: 241 KTSLNKEGN-LNAENLCLHEGNSEFEVQGE----KLVLNMPGKHNIENAMLSIAAALKLG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGR 383
           +    + + L+ L +   R + V G N     + VD ++ ++   MI  +   + +   R
Sbjct: 296 LTFEEIRKGLKDLELTAMRLDIVNGENI----VIVDDSYNASPDSMIAAIDVTKNLKGNR 351

Query: 384 IIVVFGC 390
            I V G 
Sbjct: 352 RIAVLGT 358


>gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 482

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 162/377 (42%), Gaps = 26/377 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  V++DSR +Q G +FVA++G + D H F+   +A+GA A++VS   +    +A  
Sbjct: 27  DAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPA----AALD 82

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            S   +L V +TR  L   A+    + P  ++AVTG++GK++V   +      S + +  
Sbjct: 83  LSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMI------SAVFACA 136

Query: 147 IGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203
           +G  + +++    +N +  P  ++   A   L+    G+ H      +  L       + 
Sbjct: 137 VGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNH---PGETEVLATIAQPTVA 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAH 261
           LI     N  R+H ++         A+       LP +  A+   D A   E   + RA 
Sbjct: 194 LI----NNAQREHQEF-MVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWRAA 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               RVL  G +G  +    V    + Q V +   G  F F+ PL G     NAL A   
Sbjct: 249 AGTRRVLDFGIEGGAVS-ATVTDTADGQHVDVHAPGLRFSFMLPLLGVHNARNALAATAC 307

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +A GI   ++ + L     V GR +       GG +  D Y    +S+   +  + T+ 
Sbjct: 308 ALAAGIAPEVIAQALSAFAPVKGRLQR-KPGVHGGLVIDDTYNANPDSVRAAIDALATLP 366

Query: 381 SGRIIVVFGCGGDRDQG 397
           + R +V+   G    QG
Sbjct: 367 APRWLVLGDMGEVGAQG 383


>gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 452

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 50/329 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FV IV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVTIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +       
Sbjct: 73  IPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L + L P++   I+  DD            K++ 
Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+          A  N     I +  +++D+  P  G+  ++N+++
Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVL 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           A    +A+G++    L++ + +    GRF
Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRF 313


>gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 457

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 187/464 (40%), Gaps = 64/464 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTP 91
           +S+DSR I+ G +F+ + G + +G  FI  A+  G+         SL + +  IR  N P
Sbjct: 28  ISTDSRTIKPGDLFIPLKGERFNGEKFIDDALNVGSA--------SLTESTNCIRHDNKP 79

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I+ V++T+  L   A     K     +AVTG+SGK++    +  +       S +     
Sbjct: 80  IIFVEDTKDALHRIAKYYRSKFNIPFIAVTGSSGKTTTKDMIYDVL------SMKYNVLK 133

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--- 208
           TI +F  +N +  P  ++    L+      V    VE    G  + R   +K IA     
Sbjct: 134 TIGNF--NNEIGLPLTLF---TLNDDHDMAV----VEMGMSGFGEIRR--LKNIASPNVA 182

Query: 209 -FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            +TN+G  HI+   +++    AK  L E+    ++  I   DD   K + K+    G + 
Sbjct: 183 VYTNIGVAHIEKLGSRENILKAKSELIEDFKNGDTVVINADDDMLIKMLEKK----GPKF 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G     I    +       +  + ++G   D    +PG+  +YN+L A  + I   +
Sbjct: 239 VTYGINNGDIKAFDIELNEESSKYKVLIDGYVLDVELNVPGKHNIYNSLAAICIGIQFDV 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           +   + + L K      R   +  +  G +I  D Y    +S++  L  +   T  R + 
Sbjct: 299 NKEDIRKALAKFQPSAMRLNII--DVAGIKIINDVYNANPSSMKAALSVLGGYTERRKVA 356

Query: 387 VFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           V G     G  +D   R +   +  +  D+ I   D              +    G IEK
Sbjct: 357 VLGNMLELGQYKDIAHREVGEYVKENDIDVLITVGDYA------------LKIADGAIEK 404

Query: 443 G----------NRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
           G          N  EAI     ++ + D+ +V G +G E   IV
Sbjct: 405 GMNNDNVFRCANNAEAIDVIKNIMKESDIFLVKGSRGMEMEEIV 448


>gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
 gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
          Length = 459

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 145/331 (43%), Gaps = 43/331 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR I+  W+F+ I G + DGH FIPQ + +G  A+   S   L++ S       P 
Sbjct: 31  VAIDSRKIEKDWLFIPIKGARVDGHSFIPQVMEKG--ALCTLSEVVLENVSH------PY 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRSGLSSF 145
           ++VD+  + L   A          ++ +TG+ GK+S    +AS ++Q   + + +G  + 
Sbjct: 83  ILVDSCEQALKDIAEHYRKALDIKVVGITGSVGKTSTKEMIASVLEQKYHVLKTAGNFNN 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
           +IG   TI +   ++ +              +   G+ H          + HRL  + + 
Sbjct: 143 EIGLPLTIFNIRDEHEIA-------------VLEMGINHFG--------EMHRLAKMARP 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++    +     AK  +F+ + P ++  I+  DD    +++      G
Sbjct: 182 DICVITNIGLCHLENLIDRDGILKAKTEMFDFMQP-DAKIILNGDD---DKLITVTDVKG 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLC 322
              +  G   +          H+ + V+ ++   D   D + P+PG   VYNAL  A + 
Sbjct: 238 QTPMFFGLSTELDAFADNIHTHSLKGVSCTLHLGDNCIDTMIPIPGNHMVYNALAGALVG 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G+ +  + + +E L  V GR   + T+S
Sbjct: 298 RELGLTAEEIKKGIESLTPVSGRNNMILTDS 328


>gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
 gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
          Length = 459

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 157/381 (41%), Gaps = 52/381 (13%)

Query: 25  WRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           W +  IN   V++DSR +    +F+ ++G K DGH +I Q    GA   + S        
Sbjct: 19  WGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQCFNAGATVCLTSKQI----- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             T+   T ILV D+T K L   A+    K    ++ +TG+ GK+S    V      S +
Sbjct: 74  -PTVTGCTAILV-DDTAKALRDLAAWYRRKFDIPVVGITGSVGKTSTKDMV------SCV 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDG 201
            S Q     T  +F  +N +  P  ++    + Y     V    +E    G  +  RL  
Sbjct: 126 LSQQYKVLKTQGNF--NNEIGLPLTVF---NIDYSHEAAV----IEMGMSGFGEISRLTA 176

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR- 259
           I +      TN+G  HI+   +Q+    AK+ + EE L K+   ++  DD     +  + 
Sbjct: 177 IARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEE-LDKDGLVVLNGDDPLLSSLKGKL 235

Query: 260 -------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEF 310
                    N G    ++ YQ K            +Q  T  +   D  ++   P+PG  
Sbjct: 236 SFRTVFYGMNVGSDYTALNYQPK-----------GEQGTTFEISVNDCLYNVEIPVPGIH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
            VYNAL A    I + I   +++  +++    PG       N  G +I  D Y  +  S+
Sbjct: 285 NVYNALAAIAAGIEMKIPMEIIINGIKQFS--PGNMRQSIINHNGIKIINDAYNASPQSM 342

Query: 370 EMILKNIRTITS-GRIIVVFG 389
           +  +  ++ I+S  R I V G
Sbjct: 343 QAAINVLQEISSESRSIAVLG 363


>gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 459

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 155/339 (45%), Gaps = 47/339 (13%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S+    +++ KI+ VS+DSR IQ   +++ +VG   DG LF+ +   +GA A ++   Y 
Sbjct: 16  SLCDPNYKDVKISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKECEDKGASAFLIDRDYE 75

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-- 136
           +++       + P + VD+T K L   A     +    ++ +TG++GK++    + ++  
Sbjct: 76  IKN-----NISIPYIRVDDTLKALQDLARSYRKELNVKVIGITGSNGKTTTKDLLYEVLS 130

Query: 137 ----CQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                Q++ G  + +IG   TI S  +D  +          A+  L +     +S+ ++ 
Sbjct: 131 TKYKTQKTIGNLNNEIGVPKTILSLNEDTEI----------AVVELGTDKFGDISLTSNI 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                  L  I +I    TN+G  H+   ++++    AKM + E L   +    IY  D 
Sbjct: 181 ------ALPDIAII----TNIGDSHLHNLKSKEGILKAKMEIVEGL--SDDGIFIYNGD- 227

Query: 252 YSKEVMKR---AHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              E MK+   ++    +++S G +    F+ +K++ +   K  V+ S +G+ +D   PL
Sbjct: 228 --DETMKKEIDSYKVDQKIISFGLEDDNDFV-VKEIPSTPAK--VSFSHDGETYD--IPL 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            G   +YN      +   +G+D+  V   L K+     R
Sbjct: 281 LGRHNIYNGACCLLIANILGLDTNEVKSGLVKVRPANNR 319


>gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 452

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 50/329 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FV IV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVTIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +       
Sbjct: 73  IPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L + L P++   I+  DD            K++ 
Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+          A  N     I +  +++D+  P  G+  ++N+++
Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVL 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           A    +A+G++    L++ + +    GRF
Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRF 313


>gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 462

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 162/374 (43%), Gaps = 49/374 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS      +FS   I  +
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKIGES 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + ++ V+NT K L   A     K    ++A+TG++GK+S    V  +        +++  
Sbjct: 83  SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVGAVLSE----KYKVFK 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I  
Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +++    AK+ +  +   K+S  II  DD +    +    +   +V
Sbjct: 190 --TNIGISHIENLGSRENILKAKLEV-TDFFCKDSILIINGDDDF----LSNFESDKFKV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316
             +G   KF          N   + +  E  +FD           F   +PG+  V N+L
Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A     A+ I+   +   ++ L     R + V    +G  I  D Y  + +S++  +  
Sbjct: 295 TAIACGRALDINYKDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352

Query: 376 IRTITSGRIIVVFG 389
           ++ I   R I + G
Sbjct: 353 MKNIKGKRTIALLG 366


>gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
 gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
          Length = 485

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 163/411 (39%), Gaps = 49/411 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L   D       + + P    E  +   + DSR +Q G ++VA+ G + DG  F   A+ 
Sbjct: 3   LSASDIARFTGGMLVVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFCINALD 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  ++V  +          RS   I+ V++T    +  A+    +   +++A+TG+SG
Sbjct: 63  AGAACLLVMRSPDEALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAITGSSG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V+ +  R+G        +   +   Q+N L  P+ +  A+       +    V
Sbjct: 123 KTTTKNLVRDVLARAG--------SVVATQGNQNNELGVPATLLRAE-------EDTQFV 167

Query: 186 SVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VE    G  Q       ++      TN+G  HI+   ++     AK  +   +      
Sbjct: 168 VVEMGMRGRGQIESLCRFVRPDMALVTNVGESHIELLGSRDGIARAKAEIIAGVKANTGI 227

Query: 244 AIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKF-------------------IHLKKV 282
           A I A D ++        A   G  +L     GK                    I L + 
Sbjct: 228 AFINASDDFASMLPAYGSADERGVEILFFDGSGKEPASYAAQDGIEVPSTFASDIELDEA 287

Query: 283 -CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            CA     + T+            L G   V+NA  AA +   +G+ ++++++ LEK   
Sbjct: 288 GCA-----RFTLHTPTGTASVHLALAGLHNVHNATAAAAVGSQVGLSASVIVDALEKATS 342

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT-SGRIIVVFG 389
           + GR   V T S  G + VD A+ +N  S++  L +   +  +GR I V G
Sbjct: 343 LDGRGRVVRTAS--GVVVVDDAYNANPDSMKASLGSFAAMHFAGRHIAVLG 391


>gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
 gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
          Length = 450

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 154/370 (41%), Gaps = 45/370 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V  DSR I  G +FV + G + DGH FI QAI  GA A    S +SL    A    
Sbjct: 21  KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141
           + P++ V +  K +   A+    K    ++A+TG++GK+       SV S   +  +  G
Sbjct: 74  DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI    QD        I L   + + +   +T +S+ A            
Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +     
Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +
Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAEGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
                +    + + L  + +   R E++ T   G  I  D Y     ++ ++L   + + 
Sbjct: 286 GRFFELSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344

Query: 380 TSGRIIVVFG 389
           T GR I V  
Sbjct: 345 TKGRRIAVLA 354


>gi|317122782|ref|YP_004102785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592762|gb|ADU52058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
           marianensis DSM 12885]
          Length = 592

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 34/290 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+ + S  +Q G +FVAI G + +G  F  +A+ +GA  IV                
Sbjct: 24  QVAEIRTHSSRVQRGDLFVAIPGRRHNGVAFAGEAVRRGARVIVAEQPPPGPLPPGV--- 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            T I V D       L A+R YG HP   L V G +G +   +    +      + ++ G
Sbjct: 81  -TWIQVPDARAALSRLAANR-YG-HPAGRLLVVGITGTTGKTTTALLLHHLLKAAGWRAG 137

Query: 149 PTSTISSFAQDN-------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               + S   D        RLTTP P+ L   L  + + G T V +E SS G+DQ R+D 
Sbjct: 138 ---LVGSLEVDTGRRRFTGRLTTPDPLELHGYLREMVTAGCTAVVMEVSSQGVDQRRVDD 194

Query: 202 IKLIAGSFTNLGR-DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           +    G  TNL   +H++YH T   Y  AK R F  ++P     +++  +A ++      
Sbjct: 195 VPFALGVVTNLAPLEHMEYHPTYDHYAAAKAR-FVAMIPPHGGVLMHEGEAAAR------ 247

Query: 261 HNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  L    +   +H  +   CA+    +  ++V G+  +   P PG
Sbjct: 248 -------LGPAARAPVVHFGRGPRCALRLLDEEPVAV-GRLGEGAVPWPG 289


>gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
 gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
          Length = 470

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 156/378 (41%), Gaps = 66/378 (17%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY  +   
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIYPHE--- 238

Query: 254 KEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLF 304
            E +   +  G  R L+ G        K   A     ++    EG  F        +   
Sbjct: 239 -ETLLLGNIIGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y 
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYN 348

Query: 364 HTSNSLEMILKNIRTITS 381
            +  +L+ +LK    + S
Sbjct: 349 SSPTALKTVLKTFMHMDS 366


>gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 427

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 115/492 (23%), Positives = 213/492 (43%), Gaps = 80/492 (16%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L+ K FP L            + KI  V  DSR I  G +F AI    ++G+ ++ 
Sbjct: 3   RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAI----QNGNQYVQ 47

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+ +GA ++V++  YS         ++  ++ V+NT   +   A          ++A+T
Sbjct: 48  EALDKGA-SLVIADRYS--------GNHEKVIKVENTILVMQELAEEYRRCLKTKMIAIT 98

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    +  I  ++    FQ     T+ ++  +N +  P  I     L+      
Sbjct: 99  GSNGKTTTKDIIYAILSKT----FQT--KKTLGNY--NNHIGLPFTI-----LNLEEKDE 145

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              + +  SS G     +D +  IA    G  TN+G  H+++ +T++  F AK     EL
Sbjct: 146 FAVLEMGMSSFG----EIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKT----EL 197

Query: 238 LP--KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           LP   E   I   DD + K++           + VGY  +  +  ++     K + + S 
Sbjct: 198 LPYLPEGCFITSGDDVFLKKI---------PAIHVGYDERNDY--RIFGYKKKDRRS-SF 245

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +  D  +  PL G+  V NA +   +   IG+DS  + ++L ++ + P RFE    +   
Sbjct: 246 QLNDKQYEIPLEGKHNVMNAAMGIAIAETIGMDSKTIQQNLLQIELSPMRFE---RSEYQ 302

Query: 356 GRIYVDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCG---GDRDQG--KRPIMGKIALD 408
           G  Y++ A+ ++ + M   L ++   T+   I V G     G+++    K  I   I+  
Sbjct: 303 GTKYINDAYNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCS 362

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  I +     PR     K   +    IP  +    + E I+  ++   ++ VL+ A +G
Sbjct: 363 LQAILLY---GPRM----KKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRG 415

Query: 469 HETVHIVTNGEK 480
            +   I+   EK
Sbjct: 416 MKLEEIIEREEK 427


>gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
          Length = 473

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 62/364 (17%)

Query: 27  ERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ER +   V +DSR +  G +FVAI G + DGH F  QA++ GA A+       L D    
Sbjct: 24  ERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAEQAVSAGAVAV-------LADHPVG 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLS- 143
           +    P ++VD+T + L   A       P+  ++ +TG+SGK+S      Q+  R G + 
Sbjct: 77  V----PAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSSGKTSTKDLGAQVLARLGPTV 132

Query: 144 ------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                 + ++G   T+    +D R      + L K     S++GV H++           
Sbjct: 133 APTGSLNTEVGLPLTVLRADRDTRF-----LVLEK-----SARGVGHIAYLC-------- 174

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+   ++  G   N+G  H+    +++A   AK  L E  LP +  A++ ADD     V+
Sbjct: 175 RIAPPRI--GVVLNVGSAHLGEFGSREAIAQAKGELVEA-LPADGTAVLNADDPL---VL 228

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----LPGEFQ-- 311
              H    RV++ G             +   + +T +     F   FP    LP   Q  
Sbjct: 229 GMRHRTRARVVTFGTSAD-------ADVRATEIMTDATARPSFRLCFPDGAGLPVALQMH 281

Query: 312 ----VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               V NAL  A +   +G+ +  +   L +   +  R+    T    G   ++ A+ +N
Sbjct: 282 GVHHVSNALAVATVAWVLGLGAEEIAAALREARPL-SRWRMEVTTRDDGVTVINDAYNAN 340

Query: 368 SLEM 371
              M
Sbjct: 341 PESM 344


>gi|289612968|emb|CBI59981.1| unnamed protein product [Sordaria macrospora]
          Length = 88

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 49/74 (66%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           MG++    AD+AIVTDDN R+ED   IRA+++ G P   E G+R  AIR A +M    D+
Sbjct: 1   MGEVVATHADVAIVTDDNSRTEDAATIRAQVLEGAPNATEIGDRRAAIRAACDMAQAGDI 60

Query: 462 LVVAGKGHETVHIV 475
           +++AGKGHE   IV
Sbjct: 61  VLIAGKGHEQGQIV 74


>gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pseudoalteromonas atlantica T6c]
 gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 471

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 141/336 (41%), Gaps = 59/336 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+RHI +  +F+A+ G   DGH FI QA   GA A+VVS            +  
Sbjct: 30  IQGVSTDTRHINSDDLFIALSGPNFDGHKFIEQAQTSGAIAVVVSR-----------QVE 78

Query: 90  TPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           TP+  ++V +T+  L L    +  +     +A+TG+SGK++V   V  I  R G      
Sbjct: 79  TPLAQILVSDTKAALGLLGQAVKREVAPKTVAITGSSGKTTVKEMVAAILSRRG------ 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +T  +F  +N +  P  +   +A    +      V + A+  G   +  + +K    
Sbjct: 133 KVLATKGNF--NNDIGVPLTLLRLEAQHEFAV-----VELGANHLGEIAYTTELVKPDVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +  N    H++   +      AK  +F+  L K+  AI  AD  +               
Sbjct: 186 TIVNAAAAHLEGFGSLLGVARAKSEIFKG-LGKDGLAIFNADSQF--------------- 229

Query: 268 LSVGYQGKFIHLK------KVCAIHNKQQVTISVEG-KDF---------DFLFPLPGEFQ 311
               + GK+ HL+      +  A +  Q V + + G  DF             PLPG   
Sbjct: 230 -YAFWHGKYEHLRNQRFSTQGEADYYAQDVVLGLSGCADFLMVTPIGKVSITLPLPGIHN 288

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           V NALV+A L I +G +   V   L+ +  V GR +
Sbjct: 289 VSNALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQ 324


>gi|134095973|ref|YP_001101048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Herminiimonas
           arsenicoxydans]
 gi|133739876|emb|CAL62927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 121/293 (41%), Gaps = 53/293 (18%)

Query: 102 LSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           + LFA  L     E      ++A+TGT+GK++V S V  +CQR+GL+    G        
Sbjct: 101 IELFAQALAALKEERNYTPKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI------ 154

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                    SP  L +    ++S  +  V V E SS  L  H    ++    +  NL +D
Sbjct: 155 ---------SPAALDRLDQAVASDALPQVWVLELSSFQL--HFTYSLQADVATVLNLTQD 203

Query: 216 HIDYHQTQQAYFNAKMRLF----------------EELLPKESPAIIYADDAYSKEVMKR 259
           H+D+H    AY + K R+F                +  LP  +     AD+A        
Sbjct: 204 HLDWHGDMAAYADDKARIFGSNTIRVLNRDDARVMQMALPSAAVITFGADEAGQANCFGL 263

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-----GEFQVYN 314
           A   G R LSV    + +  K+      K  V +++  K    L P+      G+    N
Sbjct: 264 ADENGMRWLSVAVAEEELPQKR----RKKDNVELAISTKK---LMPVDALKIRGQHNAIN 316

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           AL A  LC AIG+  A +L  L + H  P R E V T +  G  Y D +  +N
Sbjct: 317 ALSALALCRAIGLSFAQLLHGLREYHGEPHRVEHVMTIA--GVEYYDDSKGTN 367


>gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
 gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
          Length = 457

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 157/378 (41%), Gaps = 48/378 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++  V  DSR +Q  ++FVAI G   + H FIP  I +GA  ++        DFS  + 
Sbjct: 26  REVGGVVIDSRKVQKDYLFVAIDGENVNAHQFIPDTIEKGALCVISHEDLGDTDFSYILV 85

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +T   ++D  + +   F  ++ G        +TG+ GK+S    +  +  +     +++
Sbjct: 86  ESTGQALLDIAKLYRDSFDVKVVG--------ITGSVGKTSTKEMIASVVAQK----YKV 133

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLI 205
               TI +F  +N    P  I+       ++    GV H          +  RL  +   
Sbjct: 134 --HKTIGNF--NNEWGLPLTIFELNEDHQVAILEMGVNHFG--------EMRRLSSVASP 181

Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H+++ +T++     K ++ +++  K+   II+  D            A 
Sbjct: 182 DICVITNIGVAHLEFFKTREGILQEKSKMIQDM--KDGGTIIFNGDDDLLSQAGPIKGAT 239

Query: 265 CRVLSVGYQGKF-------IHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             +  +G   +F       + L+   C IH   + +       F+ + PLPG   + NAL
Sbjct: 240 PILFGLGDNCQFYADNIQPMGLRGTSCTIHLPDEYS-------FECVVPLPGTHMISNAL 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-N 375
             A +   + + S  +   +E L  +PGR   + T+     I +D  + +N + M    +
Sbjct: 293 AGAAVGYTLHLTSEEIKAGIEGLPSIPGRNNIIKTDR---LIILDDCYNANPVSMKAAID 349

Query: 376 IRTITSGRIIVVFGCGGD 393
           +  +  GR + V G  G+
Sbjct: 350 VLDMAIGRKVAVLGNMGE 367


>gi|319411051|emb|CBY91451.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           WUE 2594]
          Length = 445

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ Y+  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEYEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|306836495|ref|ZP_07469467.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens
           ATCC 49726]
 gi|304567629|gb|EFM43222.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens
           ATCC 49726]
          Length = 119

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 8/94 (8%)

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRT 451
           KRPIMG+ A   AD+ +VTDDNPR+EDP  IRA +I G           E+G+R  AI  
Sbjct: 1   KRPIMGEAAATRADLTVVTDDNPRTEDPAAIRAAVIEGARQAAPDADIREQGSRARAIDE 60

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            ++     D ++V GKGHE   +V  GE+ +  D
Sbjct: 61  VVDWAQPGDAIIVVGKGHEVGQLV--GERTLHFD 92


>gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 453

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 159/373 (42%), Gaps = 44/373 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I++VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS    +         N
Sbjct: 24  IDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHLPI---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR  L    + +  +    ++A+TG+SGK+SV      I +  G   +  G 
Sbjct: 75  VPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRHCGSVLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    P+ L   L   +      + + A+  G   +  D ++  +   
Sbjct: 134 -----NFNNDIGV----PLTL---LRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRA 260
            NL   H++   +      AK  +F   LP +  AI+ AD             K V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAQAKGEIFSG-LPADGVAIVNADSNDFPHWQVMLNHKTVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A C +        F     V  +    + T+     +   L PLPG   + NAL AA 
Sbjct: 241 PQAACDI-------DFF-ASDVDVLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAAS 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +++G     V   L +L  VPGR   +  +   G++ +D ++ +N  S+    + +  
Sbjct: 293 LAMSVGATLEAVKAGLSQLQAVPGRLFPIALSE--GKLLLDDSYNANVGSMTAAAQVLAE 350

Query: 379 ITSGRIIVVFGCG 391
           +   R++VV   G
Sbjct: 351 MPGYRVMVVGDMG 363


>gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
          Length = 460

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 161/386 (41%), Gaps = 38/386 (9%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +P  W +  +  V  DSR +  G +FV I+G + DGH FI QA+  GA A + +     +
Sbjct: 17  YPELWNDISVTSVQFDSRKLSPGSLFVPIMGER-DGHDFISQAVTAGAVATLWA-----E 70

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D      ++ P ++V N  + L   A     K    ++A+TG++GK++       + +  
Sbjct: 71  DHQERRPADLPSILVKNPLEALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLE-- 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             + + +    T ++F  +N L  P  I     L   S+  V  V +     G      +
Sbjct: 129 --AEYNV--VKTKANF--NNELGVPITI-----LGMSSNTEVLVVEMGMDRPGQLHFLSE 177

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++      T +G  HI++ +T++   +AKM + + L  KE    ++  D    E  +RA
Sbjct: 178 LVQPDIAVITMIGEAHIEFFKTRERIADAKMEITDGL--KEDGCFVFNGDEPLLE--QRA 233

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVYNAL 316
            +        G +        V A   +   T ++   + D       P+ G++ V NAL
Sbjct: 234 KDLNVEQYRFGLKAD----NDVSASDIQGTDTSTMFKTNLDEETTVTIPVLGDYNVTNAL 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A  +     ID     E L    +   R E++ T  +G RI  D Y     +   +L +
Sbjct: 290 AAIAVGHKYHIDLKKEAEALVDFDLTKNRTEWL-TGKKGERILSDVYNSNPTAARAVLDS 348

Query: 376 IRTI-TSGRIIVVFG----CGGDRDQ 396
              + T GR +VV G     G + DQ
Sbjct: 349 FANVNTEGRRLVVLGDMLELGENADQ 374


>gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
          Length = 483

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 166/368 (45%), Gaps = 31/368 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I+AG +++A+ G K DG  F  QAI  GA A+++ +A S +  S  +   + I
Sbjct: 26  VSTDTRKIKAGDLYIALRGEKFDGADFAAQAIESGATAVLM-NADSFEARSLILNPQSSI 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +TR  L   A+    K    ++A+TG++GK++V   +  + + +  S   +   +T
Sbjct: 85  LLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKTTVKEMLASVLRSAAGSDDAV--LAT 142

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----GS 208
             +F  D        I +   L  L++Q    V     +H      +D +  IA      
Sbjct: 143 KGNFNND--------IGMPLTLLQLNAQHRYAVIEMGMNH---PGEIDYLTRIACPNVAL 191

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N    H++   + +A  +AK  +F  L P  S AII ADD ++   + R       +L
Sbjct: 192 INNASGAHLEGMGSVEAVAHAKGEIFSGLQPGGS-AIINADDEFAP--LWRCLAGANSLL 248

Query: 269 SVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             G  G   H   V A   N   + + V+    DF     +PGE    NAL      IA+
Sbjct: 249 EFGLSG---HSDVVGAWQPNGAGLRLDVKTPVGDFTVEMQVPGEHNARNALAVTAAAIAL 305

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383
            +    ++  L K   V GR +     +R G + +D  + +N  SL+  +  +  ++  R
Sbjct: 306 NLSLESIVAGLSKFSGVAGRLQR--KPAREGAVLIDDTYNANPASLKAAIAVLAAMSGQR 363

Query: 384 IIVVFGCG 391
           ++V+   G
Sbjct: 364 VLVLGDMG 371


>gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 466

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 127/300 (42%), Gaps = 23/300 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N VS DSR I+ G ++ A+ G + DGH FI +AI +GA A+V S      DF  +   + 
Sbjct: 27  NGVSIDSRTIKKGEVYFAMQGARYDGHDFIKEAINKGAAAVVCSK--DKIDFVKSFPDSV 84

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I+  ++T   L  FA     K     I  +TG++GK++    +  I  R G +      
Sbjct: 85  SIIKTNDTLISLGEFAKSYRTKFKSIKIAGITGSNGKTTTKEILVSIFNRKGRT------ 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            S   +F  +NR+  P  I+ L   + Y   +  T      S  G  +   D +   AG 
Sbjct: 139 LSNKGNF--NNRIGIPLSIFNLTSDIEYAVFEMGT------SLRGEIKILSDILNPDAGI 190

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H++   + +  F  K  LF+ +  KE+  I+  +D   + +M        +++
Sbjct: 191 ITNVGFSHLETFISPKGVFEEKKVLFDNV--KETGFIVINND--DEFLMTAPQYVSRKII 246

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +        +  K +    NK    I  +G       P  G F V NAL A    I  G 
Sbjct: 247 AFALDVAADVCAKNIKLYSNKMDFEIFYKGTSVKIAMPAKGRFNVSNALAAVACAIGFGF 306


>gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria monocytogenes FSL F2-208]
          Length = 346

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 146/356 (41%), Gaps = 63/356 (17%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A         Q    
Sbjct: 34  FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +    
Sbjct: 88  NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183

Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + 
Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305
           + ++    N   R L+ G        K   A     ++    EG  F        +   P
Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D
Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILND 345


>gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
 gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
          Length = 458

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 41/332 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R +Q G +FVA+ G   DGH +I QAI +GA A+VV +  +            P 
Sbjct: 24  VSTDTRSLQPGDLFVALRGEHFDGHAYIAQAIEKGACAVVVDTVQA--------EIAVPQ 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            VV +T + L   A+    +    ++ +TG+SGK+SV   ++ +C+       Q GPT  
Sbjct: 76  WVVKDTVRALGFIAANKRAEFEGAVVGLTGSSGKTSVKGMLEAVCR-------QAGPT-V 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++   +N +  P      + L  L  Q    V    S  G   +    I+       N+
Sbjct: 128 ATAGNLNNHIGVP------QTLMRLEQQAFAIVEAGTSGFGEIAYLTSLIQPEVALVNNV 181

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H+    +  A    K  ++         A+I  DD Y++E + R  N G  + ++G+
Sbjct: 182 MPAHMAGFGSLDAIAQEKGDIYGG--SNLRCAVINLDDNYAQEFLAR--NGG--ITTIGF 235

Query: 273 QGKFIHLKKVCAIHN-------------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               I  +K   +                    + +EG  F     +PG+  V NAL AA
Sbjct: 236 TASPIQYEKNSGVDTLIYGECLTPDGMGCYSFDLVLEGNRFPVNLQVPGKHSVNNALAAA 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              +A+G+   L+ + + +   V GR + V T
Sbjct: 296 SCAVALGVAHELIAKGVSQFQGVAGRMQRVST 327


>gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 485

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 130/336 (38%), Gaps = 24/336 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  +   P+      I+ +S DSR +Q G  F AI G   DGH F   AI  GA  +VV
Sbjct: 10  LVAAMDGRPLGPMPDGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKAGAGVLVV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +         +  R   PI+VV++    L         +    I+AVTG++GK++    +
Sbjct: 70  AEG----KLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + + Q  G           + + AQ        P+ LA+           +   E   + 
Sbjct: 126 RHVLQAVG----------KVHASAQSFNNHWGVPLTLARM-----PDDCDYAVFEIGMNH 170

Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            D+ R  +  ++      T +   H+ + +       AK  +FE L P E  A++  DDA
Sbjct: 171 PDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEP-EGAAVLNRDDA 229

Query: 252 YSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
             K + K AH AG   V   G   +       C +H +   +T  + G +       PG 
Sbjct: 230 RFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVTARIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             V N L   G    +G D   V   L  L    GR
Sbjct: 290 HMVQNVLAVLGAAHLVGADLDKVASALADLSAERGR 325


>gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 427

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 171/404 (42%), Gaps = 61/404 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +S+ ++ G +FVA+ G + DGH FI +A+ +GA A++   A    D          I++V
Sbjct: 12  NSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSD---------RIVLV 62

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSSFQIG 148
            NT + L+  A       P+ I+ +TG++GK++    + ++ +R        G  + + G
Sbjct: 63  KNTVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGNMNTEYG 122

Query: 149 -PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            P S ++ +  +  L           +++L S     V+V                    
Sbjct: 123 LPLSILNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAV-------------------- 162

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H+++ ++++    AK+ + +    K+S  + + DD    ++ K+       V
Sbjct: 163 -LLNVGSAHLEFFKSRENIMEAKLEIVKH-SKKDSAVVTFFDDG---DLRKKVPVLRENV 217

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEF---QVYNALVAAGLC 322
           L  G +G  + L+      N    TIS E + F   F   LPG +   Q+ N  +AA LC
Sbjct: 218 LFFGTKGGDVVLEDWWYYENS---TIS-EYRMFGSSFTIKLPGFWNRGQLLN--LAASLC 271

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           +   +   + +  L  L  VPGRF        G RI  D Y  +  + +M ++ +     
Sbjct: 272 VMKVLGEKVDVLELSNLKAVPGRFNV--KEVEGVRIIDDTYNASPEAFQMAIEALLKF-P 328

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           GR   V G     G+  +    ++GK  LD  D   V    P +
Sbjct: 329 GRKFAVVGAMKELGEESKKFHEMLGK-QLDALDGVYVFSTEPEA 371


>gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
 gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
          Length = 445

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 156/363 (42%), Gaps = 44/363 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +Q+G +F+A+    +DGH +I  A  +GA   +V    +  D    I +   +LVV
Sbjct: 33  DSRRVQSGELFIALATASDDGHAYIADACRKGAAGALVHQLPA--DHQQLIDAGHALLVV 90

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +T   L++ A+    +    ++AVTG+SGK++V++     C R+      + PTS  ++
Sbjct: 91  PDTLAALAILAANWRQQWEFPVVAVTGSSGKTTVSA-----CLRT------LFPTSAGTT 139

Query: 156 FAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              +N +  P     +P   A  +  L   G   +   A    L Q ++       G  T
Sbjct: 140 GNYNNHIGLPLSMLGTPADAAIGVFELGMSGSGEIDALAE---LLQPQI-------GLIT 189

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI    +  A   AK+      L +    +I   D   +E++ RA      VLSV
Sbjct: 190 NVGSAHIGKLGSFAAILEAKLE-----LARHCSCLIV--DGDGQELLDRARQRHQDVLSV 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIG 326
           G+        +   +  +    + +             P   +F V N+L+A    + +G
Sbjct: 243 GFTAGCQVFPQSMELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVKNSLLAIAAGLKLG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
           +D A +   L ++ + P R+E    + RGG  Y+   + SN  SL   L++       R+
Sbjct: 303 LDQAALQAGLRRVQLPPLRWEL---HRRGGNTYIFDCYNSNPGSLRAALEDFSHYPGYRV 359

Query: 385 IVV 387
            V+
Sbjct: 360 AVL 362


>gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
          Length = 427

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 115/492 (23%), Positives = 213/492 (43%), Gaps = 80/492 (16%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L+ K FP L            + KI  V  DSR I  G +F AI    ++G+ ++ 
Sbjct: 3   RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAI----QNGNQYVQ 47

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+ +GA ++V++  YS         ++  ++ V+NT   +   A          ++A+T
Sbjct: 48  EALDKGA-SLVIADRYS--------GNHEKVIKVENTILVMQELAEEYRRCLKTKMIAIT 98

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    +  I  ++    FQ     T+ ++  +N +  P  I     L+      
Sbjct: 99  GSNGKTTTKDIIYAILSKT----FQT--KKTLGNY--NNHIGLPFTI-----LNLEEKDE 145

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              + +  SS G     +D +  IA    G  TN+G  H+++ +T++  F AK     EL
Sbjct: 146 FAVLEMGMSSFG----EIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKT----EL 197

Query: 238 LP--KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           LP   E   I   DD + K++           + VGY  +  +  ++     K + + S 
Sbjct: 198 LPYLPEGCFISSGDDVFLKKI---------PAIHVGYDERNDY--RIFGYQKKDRRS-SF 245

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +  D  +  PL G+  V NA +   +   IG+DS  + ++L ++ + P RFE    +   
Sbjct: 246 QLNDKQYEIPLEGKHNVMNAAMGIAIAEMIGMDSKTIQQNLLQIELSPMRFE---RSEYQ 302

Query: 356 GRIYVDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCG---GDRDQG--KRPIMGKIALD 408
           G  Y++ A+ ++ + M   L ++   T+   I V G     G+++    K  I   I+  
Sbjct: 303 GTKYINDAYNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCS 362

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  I +     PR     K   +    IP  +    + E I+  ++   ++ VL+ A +G
Sbjct: 363 LQAILLY---GPRM----KKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRG 415

Query: 469 HETVHIVTNGEK 480
            +   I+   EK
Sbjct: 416 MKLEEIIEREEK 427


>gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
 gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
          Length = 458

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 167/389 (42%), Gaps = 58/389 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA+ G   DGH F+ +A  QGA   +VS          TI + 
Sbjct: 24  VSGVAFDSREVTGGDLFVAMKGEATDGHRFVDKAFGQGAAGAIVSQ---------TI-AQ 73

Query: 90  TPILVVDNTRKFLSL---FASRLYGKHPENILAVTGTSGKSSV--ASF--VQQIC----Q 138
             +LV D+     +L     +R+ GK    ++ VTG+ GK+    A F  + ++C     
Sbjct: 74  PHVLVPDSAAALEALGRTSRARMQGK----VVGVTGSVGKTGTKEALFHALDRVCPGEVH 129

Query: 139 RSGLSSF--QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           RS + S+   +G   ++S   +++        +  A  L+ L+ Q   HV++        
Sbjct: 130 RS-VKSYNNHVGVPLSLSRMPRESAFGVFEMGMNHAGELAALTRQVRPHVAI-------- 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                         T +   HI++  T++    AK  +FE L P  +  I Y D  +   
Sbjct: 181 -------------VTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPY-DSPHVAT 226

Query: 256 VMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  +A     R+L+ G+  Q      + V A      VT ++ G +  F    PGE  V 
Sbjct: 227 LYAKAEKHAARILTFGFDPQADVRARETVPAAGGGTLVTAALPGVELCFTVGAPGEHWVS 286

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM- 371
           NAL       A+G D A     L ++  +PGR +       GG  + +D ++ +N L M 
Sbjct: 287 NALAVLATVEALGGDLAAAGLALAEMPGLPGRGQRSVLPVEGGEALLIDESYNANPLSMA 346

Query: 372 -ILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             LK +    + R I V   GG R+ G R
Sbjct: 347 ATLKQLGREQADRRIAVL--GGMRELGDR 373


>gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 453

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 177/413 (42%), Gaps = 39/413 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQD 81
           ++  E    ++S+D+R I    +F+A+ GN  +G+ ++ +AI  GA  AI+    + L++
Sbjct: 18  IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGATVAIIDEVNFKLEE 77

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               +     ++ V++ +  L   A     K    ++ +TG++GK+S    V        
Sbjct: 78  ----LNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITGSTGKTSTKDLV-------- 125

Query: 142 LSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRL 199
            ++F  G  S   +    +N +  P  I+       L S     V +E  ++  D+ HRL
Sbjct: 126 -AAFLSGKYSVFKTKGNFNNEIGLPLMIF------ELDSSYDIAV-LEMGTNNFDEIHRL 177

Query: 200 DGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             I +      TN+G  HI+Y +T++     K  + +      +  I Y +D   K  + 
Sbjct: 178 TNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQK--VN 235

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNAL 316
             H    ++  +GY  K+ ++ + +           ++  G+   F   + GE  + NAL
Sbjct: 236 EDHE--FKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNAL 293

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
           +   +    GI    +   L        R EF+  N+    I  D Y  + +S++  L  
Sbjct: 294 LGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNF--TIINDCYNASPDSMKSALSV 351

Query: 376 IRTITSGRIIVVFG-CG--GDRDQGKRPIMGKIALDLADIAIVTD---DNPRS 422
           ++T +  R I V G  G  GD  +    I+GK A+  ADI + T    DN +S
Sbjct: 352 LKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTTGEFRDNYKS 404


>gi|161870654|ref|YP_001599827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis 053442]
 gi|189082912|sp|A9M2H5|MURD_NEIM0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|161596207|gb|ABX73867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 053442]
          Length = 445

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ Y+  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEYEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 451

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 159/371 (42%), Gaps = 38/371 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V           VC++ ++    IS    +  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNEHYDLPILGKHNMKNAT 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+   ++ ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 289 IAIAVGHELGLTYNIIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 348

Query: 377 RTITSGRIIVV 387
            T+T  RI+++
Sbjct: 349 STLTGRRILIL 359


>gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 452

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 140/329 (42%), Gaps = 50/329 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAIV N+ DGH FIP AIA GA+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +   Q   
Sbjct: 73  IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVHFTQ--- 129

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
             T+++             YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 130 -GTLNN-------------YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L +  LP++   I+  DD            K++ 
Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKA-LPRDGFCIVNLDDERIPNYAKLLECKKIS 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+          A  N     I +  +++D+  P  G+  + N+++
Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLLNSVL 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           A    +A+G++    L++ + +    GRF
Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRF 313


>gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 458

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 150/359 (41%), Gaps = 57/359 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS+D+R IQ G ++V + G K DGH F+  A+ +GA A++ S          +  ++
Sbjct: 27  VHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKGASAVLWSET------EGSPPAD 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142
            P++VVD+T + L   A R   +    ++ +TG++GK++    V        ++ +  G 
Sbjct: 81  VPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKDIVAALLATTYKVQKTEGN 140

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  IG   T+    +D  +                      V +  S+ G  +   +  
Sbjct: 141 LNNHIGVPLTLLRLEEDVEMAV--------------------VEMGMSNFGEIELLSNIA 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A   TN+G  H+    +++    AK+ +   L  K++   +Y  D    E +  +  
Sbjct: 181 EPDAAIITNIGESHLQELGSREGIAQAKLEILSGL--KKNGLFVYNGD----EPLLASRV 234

Query: 263 AGC----RVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           A       VL+ G      Y  + +HL+      N    TI  +  +  F  P+ G+  V
Sbjct: 235 AHLPLPEHVLTFGQGNKNDYYPESVHLQA-----NGMMFTIR-QAANRSFFLPILGKHHV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           YNAL A  +     +    V E L +L V   R E + T    G   ++ A+ +N   M
Sbjct: 289 YNALAALAVARFFDVSWENVQEALSRLQVTRMRMEVIETEK--GWTVINDAYNANPTSM 345


>gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2846]
          Length = 457

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q+ S+ +  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 77  -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Clostridium botulinum H04402 065]
          Length = 462

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 49/374 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS      +FS   +  +
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVGKS 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + ++ V+NT K L   A     K    ++A+TG++GK+S    V  +        +++  
Sbjct: 83  SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I  
Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMSEAAKPDIAII-- 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +++    AK+ +  +   K+S  II  DD    +++    +   +V
Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQVYNAL 316
             +G   KF          N   + +  E  +FD L             +PG+  V N+L
Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAENIEFDILEQGKTAYKCFGVNVPGKHNVLNSL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A      + I+   +   ++ L     R + V    +G  I  D Y  + +S++  +  
Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352

Query: 376 IRTITSGRIIVVFG 389
           ++ I   R I + G
Sbjct: 353 MKNIKGKRTIALLG 366


>gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
 gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
          Length = 451

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 30/330 (9%)

Query: 6   LIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  + P ++++ L         + IN++++D+R I    IF+A+ G K DGH FI  AI
Sbjct: 1   MILSEIPNILSKNLKYLSKPLSNQLINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+GA  ++V    S+     + +  T I+V D    +  + A+    K    I+ +TG+ 
Sbjct: 61  AKGAIGVIVDHEVSV----ISSKRITQIIVKDTLIAYQEI-ANWWRNKLTIPIIGITGSV 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +    G          T +++  +N +  P  +     LS  ++     
Sbjct: 116 GKTTTKELIAAVLGVYGKVH------KTQANY--NNEIGVPKTL-----LSLTTNHDYAV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +   + G         +   G  TN+G  HI    +++A   AK  L  E +PK+S A
Sbjct: 163 IEMAMRARGEIALLSQIARPTIGIITNVGTAHIGRLGSREAIAEAKCELLAE-MPKDSIA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  DD    E   R      + ++ G +G  I       + + Q   + VEG   DF  
Sbjct: 222 ILNHDDQRLMETAARIWQG--KTITYGLEGGDI----TGELLDNQ--ILRVEG--IDFPL 271

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           PLPG     N L A  +   + +D  L+ +
Sbjct: 272 PLPGRHNALNYLAALAVTKQLNLDWNLLTQ 301


>gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2866]
          Length = 457

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 133/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA+AQGA  +VV      Q+ S+ +  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVAQGAVTVVVQ-----QENSSIL-- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 77  -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 457

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q+ S+ +  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 77  -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
 gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 464

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 172/377 (45%), Gaps = 67/377 (17%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E  I  V  DSR + AG +F AI    ++G+ ++ +A+ +GA +IV++  Y        
Sbjct: 54  KELSIQNVVMDSRKVVAGSLFFAI----QNGNRYVSEALEKGA-SIVIADHY-------- 100

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +  ++ V +T  F+   A+         ++A+TG++GK++    V  I  ++     
Sbjct: 101 FEPHERVISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAILSKTF---- 156

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              PT  T+ ++  +N +  P  I     L+         + +  SS G     +D +  
Sbjct: 157 ---PTKKTLGNY--NNHIGLPFTI-----LNLEEGDEFAVLEMGMSSFG----EIDALGK 202

Query: 205 IA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--KESPAIIYADDAYSKEVMK 258
           IA    G  TN+G  H+++ +T++  F AK     ELLP   +   I   DD + K+V  
Sbjct: 203 IARPDYGIITNIGDSHLEFLKTRENVFKAKT----ELLPYLPQGHFITSGDDIFLKKV-- 256

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALV 317
               +G   + VGY+    +  ++ +   K+++T   V GKD++    L G+  V NA +
Sbjct: 257 ----SG---VHVGYEEGNDY--RIVSYRKKERMTSFQVRGKDYEIC--LEGKHNVMNAAM 305

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVDYAHTSNSLEMI-- 372
              L   IG+    +  +L ++ + P    RFE+ GT       Y++ A+ ++ + M   
Sbjct: 306 GIALAEMIGMKPEEIQRNLSQIELSPMRFERFEYRGTE------YINDAYNASPISMFAA 359

Query: 373 LKNIRTITSGRIIVVFG 389
           L ++  + + R   V G
Sbjct: 360 LDSLEEMKAERKFAVLG 376


>gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 459

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 160/383 (41%), Gaps = 32/383 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +P QW E  +  V  DSR +  G +FV I G + DGH FI QAI  GA A + +     +
Sbjct: 17  YPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQAIQAGAVATLWA-----K 70

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D   T  ++ P + V++    L   A     K    ++A+TG++GK++       +    
Sbjct: 71  DHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLA-- 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             + F +    T ++F  +N +  P  I     L   ++  V  V +     G      +
Sbjct: 129 --TEFNV--VKTEANF--NNEIGVPITI-----LGMNANTEVLVVELGMDRPGQLHFLSE 177

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++      T +G  HI++ +T+    +AKM + + L  KE    IY  D     + +RA
Sbjct: 178 LVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGL--KEDGCFIY--DGDEPLLAERA 233

Query: 261 HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                   + G + +  +    V     +    I+++  + +   P+ GE+ V NAL A 
Sbjct: 234 KAVDVEQRTFGMKNENDVFASDVAGTDTETSFKINLD-PEVEVKLPIIGEYNVKNALAAI 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI-R 377
            +     +  A     L   ++   R E++    +G RI  D Y     + + +L +   
Sbjct: 293 TVGDRYHVGVADSARALADFNLTKNRTEWL-KGRQGERILSDVYNSNPTAAKAVLNSFAH 351

Query: 378 TITSGRIIVVFG----CGGDRDQ 396
           T  +GR  VV G     G + DQ
Sbjct: 352 TKKTGRRFVVLGDMLELGENADQ 374


>gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 825

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 157/357 (43%), Gaps = 36/357 (10%)

Query: 27  ERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           E  I+ V +DSR +      +F A+  N+ DGH +I +   +G    VV    +    +A
Sbjct: 21  EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYISELYRRGVRCFVVEEVPAR---AA 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  +   L V +TR+ L   A R        I+ +TG++GK+ V  ++ Q      L S
Sbjct: 78  ELFGDANFLCVRSTRQALQRLAQRHREAFNIPIVGITGSNGKTMVKEWLYQ------LLS 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            Q+  T +  S+  ++++  P  ++L  + S L   G+    +  S  G  Q   D IK 
Sbjct: 132 PQMVVTRSPRSY--NSQIGVPLSVWLLNSHSQL---GIFEAGI--SQKGEMQALHDIIKP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263
                TN+G  H +   T +     K+RLFE      +  ++Y ADD     V+   +N 
Sbjct: 185 NIAVLTNIGSAHEENFATPEEKCREKLRLFEG-----AEVMVYNADDDLVTRVLNETNNK 239

Query: 264 GCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQVYNALV 317
           G R+  S       + + K+    +KQ    ++      G+   +  P   +  V N++V
Sbjct: 240 GERLAWSTKSPNAAMFVTKI----DKQPTHTTIHYIYKGGQPASYSLPFIDDASVCNSVV 295

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
            A +C+ +G+D+  + + + +L  V  R E V     G  +  D Y    NSL++ L
Sbjct: 296 CATICLHVGLDAHTIDKRMRRLEPVAMRLE-VKEGLNGCTLINDSYNSDINSLDIAL 351


>gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
 gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
          Length = 457

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 134/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA+AQG+ A+VV      Q+ S+ +  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQAVAQGSVAVVVQ-----QENSSIL-- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 77  -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  + NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter sp. 638]
 gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterobacter sp. 638]
          Length = 452

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 143/333 (42%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q ++  ++ V++D+R I  G +FVA+ G + D H F  QA   GA A++VS    +   
Sbjct: 17  LQGQDLTVDAVTTDTRKITPGCLFVALKGERFDAHDFADQAKENGAGALLVSRKLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P LVV +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLVVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G          +N +  P  +     L          + + A+  G     +D  
Sbjct: 128 TLYTAGNL--------NNDIGVPMTL-----LRLTEEHEYAVIELGANHQGEIAWTVDLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
           +  A    NL   H++   + +    AK  ++  L P+   AI+ AD+           S
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYGGL-PENGIAIMNADNNDWLNWQNIIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++  + + NA     +  +    IH+       +  + T+     D D L PLPG   + 
Sbjct: 234 RKTWRFSPNAA----NSDFSATNIHVTS-----HGTEFTLKTPTGDVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +A+G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMAVGATHDAIKTGLLNLKAVPGRL 317


>gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 426

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 171/379 (45%), Gaps = 67/379 (17%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +E  I  V  DSR + AG +F AI    ++G+ ++ +A+ +GA +IV++  Y      
Sbjct: 14  HLKELSIQNVVMDSRKVVAGSLFFAI----QNGNRYVSEALEKGA-SIVIADHY------ 62

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                +  ++ V +T  F+   A+         ++A+TG++GK++    V  I  ++   
Sbjct: 63  --FEPHERVISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAILSKTF-- 118

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                PT  T+ ++  +N +  P  I     L+         + +  SS G     +D +
Sbjct: 119 -----PTKKTLGNY--NNHIGLPFTI-----LNLEEGDEFAVLEMGMSSFG----EIDAL 162

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--KESPAIIYADDAYSKEV 256
             IA    G  TN+G  H+++ +T++  F AK     ELLP   +   I   DD + K+V
Sbjct: 163 GKIARPDYGIITNIGDSHLEFLKTRENVFKAKT----ELLPYLPQGHFITSGDDIFLKKV 218

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNA 315
                 +G  V   GY+    +  ++ +   K+++T   V GKD++    L G+  V NA
Sbjct: 219 ------SGVHV---GYEEGNDY--RIVSYRKKERMTSFQVRGKDYEIC--LEGKHNVMNA 265

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            +   L   IG+    +  +L ++ + P    RFE+ GT       Y++ A+ ++ + M 
Sbjct: 266 AMGIALAEMIGMKPEEIQRNLSQIELSPMRFERFEYRGTE------YINDAYNASPISMF 319

Query: 373 --LKNIRTITSGRIIVVFG 389
             L ++  + + R   V G
Sbjct: 320 AALDSLEEMKAERKFAVLG 338


>gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 459

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 134/304 (44%), Gaps = 39/304 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++   KI  VS DSR I+   +++ IVG K DG +FI +    G+ A ++      ++F 
Sbjct: 21  EYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQNAGSPAFLID-----KNFK 75

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQI 136
                N P ++VD+T+K L   A     K    I+A+TG++GK+       SV S   ++
Sbjct: 76  IPKSINIPYIIVDDTQKALRDLARAYRKKLDIKIIAITGSNGKTTSKNIIHSVLSEKYKV 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI  F++D  +           +  + +     +SV  +    D 
Sbjct: 136 EKTHGNLNNEIGLPLTILDFSEDTDI----------GVVEMGTDDFGEISVLTNIARPDM 185

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKE 255
             +          TN+G  H+   +T++    AK+ + E L  K+    +Y  DD   K+
Sbjct: 186 AMI----------TNIGDAHLLKLKTREGIAKAKLEILEGL--KDDGIFLYNGDDEILKK 233

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           V+  +++   + +S G  G  +  K     +       S   KD ++  PL G  QVYN 
Sbjct: 234 VLP-SYDIKQKTISFG-MGDKVDFKVEAREYTSTSTNFSY--KDENYSVPLLGSHQVYNG 289

Query: 316 LVAA 319
            +A 
Sbjct: 290 ALAV 293


>gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
 gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
          Length = 449

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 137/332 (41%), Gaps = 44/332 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +N  + D+R I++G +++ +VG   DGH +I QA   GA +I+ +      D     
Sbjct: 20  EYDVNGFTQDTRKIESGNMYIPLVGENADGHQYIAQAFNLGASSIITAHKVHYPD----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                +++V +T + +S  A  L       ++ +TG+ GK+S    +  +       S +
Sbjct: 75  ---KNVILVKDTLQAMSDMAKYLRMHRQVKVVGITGSVGKTSTKDMIYSVV------STK 125

Query: 147 IGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                T+ ++  +N +  P  I  L      +   G+ H+        L Q  L  +   
Sbjct: 126 YKTLKTLGNY--NNHIGLPLTILRLQNEEVMILEMGMNHL---GEIEHLTQIALPDV--- 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKEVM 257
             + TN+G  HI    +++    AKM +   L  K    ++  DD        A +  ++
Sbjct: 178 -AAITNIGTAHIGELGSREKILQAKMEIVNGL--KSDGTLVINDDNDMLHTVNAENYHMI 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +   N  C + ++  + +                 I  +G+ +    P+ GE  VYNAL+
Sbjct: 235 RVGQNEDCDLKAIDVELRL----------EDSYFDIDYQGQRYHVHVPVSGEHFVYNALI 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           A  + +++ ID  L +  +E   +   R + +
Sbjct: 285 AIAIGLSLDIDMNLCIAGVEHFELTKNRMDMI 316


>gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
 gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
          Length = 455

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 150/362 (41%), Gaps = 50/362 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E  +  +  D+R I+AG +FV  VG   DGH F+ QA   GA     S+A+  +D   
Sbjct: 20  FDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKAGA-----SAAFWQKDVP- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140
              ++ P++ VD+T   L   A+    +    ++AVTG++GK++    +  + + +    
Sbjct: 74  NPPADFPLIFVDDTLLALQQTAAVYLQEVNPKVIAVTGSNGKTTTKDILSGMLRETFRVH 133

Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  +  IG   TI +  +D  +              +   G+ H           +H
Sbjct: 134 RTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 169

Query: 198 RLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++ +  IA       TN+G  HI+Y  +++   NAK  +   L  K     IY  D   
Sbjct: 170 EIEVLSQIAQPDIAIITNIGEAHIEYLGSREEIANAKFEIVTGL--KADGLFIYPGD--- 224

Query: 254 KEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            E +   H A   R ++ G   +            +     + +  D +F  P+ GE  V
Sbjct: 225 -EPLLTEHTALPARSVTFGRTDQATIFATTIKTSEEGTTFTTNQTADREFYVPIIGEHNV 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
           +N++ A      +G++   +   L  +     R E++ T  +G RI  D Y  +  +L+ 
Sbjct: 284 FNSMAAMLAAFELGVEPETIQTALRHIDRSKSRLEWL-TTPKGSRILNDAYNSSPTALKT 342

Query: 372 IL 373
           +L
Sbjct: 343 VL 344


>gi|158321669|ref|YP_001514176.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus oremlandii
           OhILAs]
 gi|189028969|sp|A8MK48|MURC_ALKOO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158141868|gb|ABW20180.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus oremlandii
           OhILAs]
          Length = 465

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 143/338 (42%), Gaps = 43/338 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPEN 116
           A GAE  +  +  +++D     ++A I+ + P  +    R    +  + + G   K+ + 
Sbjct: 54  AHGAEIFIGHNEDNVKDPDLVVYTAAIKEHNPERMAAKERNIPQIDRAEMLGIIMKNYKK 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKA 173
            +AV+G+ GK++  S +  I + S L      PT  +     +   N     S  ++ +A
Sbjct: 114 AIAVSGSHGKTTTTSLISLIMEYSNLD-----PTIMVGGELDEIGGNIKIGNSEHFITEA 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y+ S              L  +   GI L      N+  DH+DY +    +     R 
Sbjct: 169 CEYVES-------------FLKFYPFIGIIL------NIDEDHLDYFKDLN-HIKEAFRK 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--V 291
           F  L+P+E   I   DDA  +E++   H+  C +++ G       + +  +  N      
Sbjct: 209 FINLIPQEGFLIANGDDANVQEIL---HSIECNLITYGLDSSNTFVARNISFTNDGYPIF 265

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +G+    F   +PG+  +YNAL +      +G++ + +  H++K   +  RF+ +G
Sbjct: 266 TVDFKGESMGTFELNIPGKHNIYNALASIATAYLLGVEPSEIQNHIKKFRGIHRRFDILG 325

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +G +I  DYAH    +   L+  +     +I  VF
Sbjct: 326 E-VKGCKIVDDYAHHPVEISATLEAAKNYPHNKIWCVF 362


>gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
 gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
          Length = 457

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q+ S+ +  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 77  -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549]
          Length = 453

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 50/329 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S  ++   +FVAIV N+ DGH FIP AIA  A+AI+VS    L         +
Sbjct: 23  IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANRAKAILVSKKQGL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +V  NT K L   A          I+++TG+ GK+SV   +  +     +       
Sbjct: 73  IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                 F Q N        YL   ++ L +   V    +EA ++  G  +   D I+   
Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257
              TN+G  H++  +T       K  L + L P++   I+  DD            K++ 
Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N    +L + Y+             N   V I +  +++D+  P  G+  ++N+++
Sbjct: 235 CSMTNPKADILVLDYR----------VTSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVL 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           A    +A+G++    L++ + +    GRF
Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRF 313


>gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 454

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 168/379 (44%), Gaps = 50/379 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ + +I  V+ DSRHIQ G +F+   G   DGH +  QA+  GA A      +  +D +
Sbjct: 20  QYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGAGA-----TFFQRDST 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGL 142
            T  +N P++ V+NT   L   A + Y +H    ++AVTG++GK++    ++ +   SG 
Sbjct: 75  LTAPTNGPVVFVENTLTALQQLA-KAYLQHVAPTVIAVTGSNGKTTTKDMLENVL--SG- 130

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
             F++  T        +N +  P        L+ L     T VS+ E    G   H ++ 
Sbjct: 131 -KFRVQKTQG----NYNNEIGMP--------LTILELNEDTEVSILEMGMSGF--HEIEL 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSK-- 254
           +  IA       TN+G  H+    +++    AK  +   L  K     IY  D+   K  
Sbjct: 176 LSNIAQPDFAVITNIGESHMQDLGSREGIAKAKFEIVSGL--KSEGYFIYDGDEPLLKPH 233

Query: 255 -EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            E +  AH      +SVG   K   ++     H ++ +T +V   D  +  P+ GE  + 
Sbjct: 234 VETLTSAHQ-----VSVGLSAKN-DMQCQMVSHLEEGITFTV-NDDVTYTIPILGEHNMR 286

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMI 372
           NA +A  +   +G+    + + L  L +   R + F+  N   G + ++ A+ ++   M 
Sbjct: 287 NATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPN---GAMVINDAYNASPTSMK 343

Query: 373 LKNIRTIT--SGRIIVVFG 389
              I T++   G  I+V G
Sbjct: 344 AA-IDTLSHMKGETILVLG 361


>gi|28209954|ref|NP_780898.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium tetani E88]
 gi|44888201|sp|Q899J1|MURC_CLOTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28202389|gb|AAO34835.1| UDP-N-acetylmuramate--alanine ligase [Clostridium tetani E88]
          Length = 456

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 142/345 (41%), Gaps = 48/345 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILV--VDNTRKFLSL--FASRLY 110
           I + I  GAE  +   A ++++     ++A +  + P L   + N  K ++   F   L 
Sbjct: 47  IDKLINLGAEIYIGHKAENIKNVDLIVYTAAVSEDNPELTKALTNNIKIMNRAEFLGYLM 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSP 167
             H  NI AV+GT GK++  S +  I   + L      PT  +    +    N  T  S 
Sbjct: 107 DGHKYNI-AVSGTHGKTTTTSMMSHITVNANLD-----PTILVGGELNIINGNVRTGKSE 160

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
            +L +A  Y  S                   L     I G   N+  DH+DY++      
Sbjct: 161 YFLTEACEYKES------------------FLKFFPYI-GVILNIDADHLDYYKDINHIK 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           NA  + F  L+PK+   I  A+D    +++K   N  C +++ G     I  K +    N
Sbjct: 202 NAFSK-FANLIPKDGYLIACAEDENINDIIK---NIDCTIITYGLNKGDIQAKNI-TFDN 256

Query: 288 KQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           K   +  V  K+   LF +    PG + V NAL +  +  A+ ID   +++ LE  H   
Sbjct: 257 KGCASFDVI-KNSSVLFSVKLNVPGSYNVLNALASICVSFALNIDKESIIKGLESFHGTH 315

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            RFE  G  +    I  DYAH    ++  L   +   S RI+ VF
Sbjct: 316 RRFELKGVRNDVTVI-EDYAHHPTEIKATLSAAKNYPSNRILCVF 359


>gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CMR15]
          Length = 485

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 159/378 (42%), Gaps = 25/378 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS----LQDF 82
           +  I  V++DSR +  G +FVA++G + D H F+P  +A+GA A++VS   +    L D 
Sbjct: 27  DAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRRLADMPDLPDL 86

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           S        +L V +TR  L   A+    + P  ++AVTG++GK++V   +      S +
Sbjct: 87  SGVA-----VLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMI------SAV 135

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  +G  + +++    N     + I L   L  L++Q    V     +H  +   L  I
Sbjct: 136 FACAVGEAARLATAGNLN-----NDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAI 190

Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKR 259
            +       N  R+H ++         A+       LP +  A+   D A   +   + R
Sbjct: 191 AQPTVALINNAQREHQEF-MVSVEAVAAEHAAVLAALPADGVAVFPRDVANGGDYAPLWR 249

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A     RVL  G +G  +    V    N Q++ +      F F  PL G     NAL A 
Sbjct: 250 AAAGTRRVLDFGIEGGAVS-AAVTDTANGQRIDVHAPDLRFSFTLPLLGVHNARNALAAT 308

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +A GI   ++ + L     V GR +    +  G  I   Y    +S+   +  + T+
Sbjct: 309 ACALAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAAIDALATL 368

Query: 380 TSGRIIVVFGCGGDRDQG 397
            + R +V+   G    QG
Sbjct: 369 PAPRWLVLGDMGEVGTQG 386


>gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
 gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
          Length = 458

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 155/383 (40%), Gaps = 53/383 (13%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  E  ++ V  DSR I+ G ++V + G   DGH ++  A  +GA      +A   Q  
Sbjct: 21  LQHNETLVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVEDAFRRGA------AASLWQKD 74

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC----- 137
                +N P+L+V++T K L   +          ++ +TG++GK++    V  +      
Sbjct: 75  VPNPPANVPLLIVEDTEKSLQELSKSYRNALRAKVVGITGSNGKTTTKDMVASVLSEKFK 134

Query: 138 --QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGL 194
             +  G  +   G   T+ S  +D  +        AK  +S+L+S     V++       
Sbjct: 135 VQKTEGNFNNHQGVPLTLLSLDEDTEIAVVEMGMSAKGEISFLTSIARPDVAI------- 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                          TN+G  HI    +++A  +AK+ + E  LP+    I   D+   +
Sbjct: 188 --------------ITNIGEAHIQNLGSREAIADAKLEITEG-LPENGLLIYMGDEPLLQ 232

Query: 255 EVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGE 309
           E   R  N  G R  + G      H   +  +  KQ+ + S        D DF  P+ GE
Sbjct: 233 E---RVPNITGIRTKTFGKG----HGNDLYPVEWKQETSGSTFRTNASGDIDFYLPVLGE 285

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD-YAHTSN 367
           + V N+L A       G+    +   L K  +   R E   G N  G +I  D Y  +  
Sbjct: 286 YNVINSLAAILAGREFGMPFEEIRAGLGKTRLSAMRMEMADGIN--GSKIINDAYNASPT 343

Query: 368 SLEMILKNIRTIT-SGRIIVVFG 389
           S+   ++ +     +GR I+V G
Sbjct: 344 SMRAAIRLVEQFEGTGRKILVLG 366


>gi|325288380|ref|YP_004264561.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963781|gb|ADY54560.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 875

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 155/385 (40%), Gaps = 55/385 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+AVTGT+GK++V   + ++   +     ++G TS+   F  D  L T        A   
Sbjct: 482 IIAVTGTNGKTTVVRMINKVLLEN---MVRVGMTSSEGVFINDKLLVTGDMTGPQSAQIV 538

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235
           L    V    +E +  G+ +  L          TN+  DH+  +  +     AK++ L  
Sbjct: 539 LRHPDVQAAVLETARGGILRAGLAYDYADVAVITNVSDDHLGQYGIETVEEMAKVKMLVA 598

Query: 236 ELLPKESPAIIYADDAYSKEVMKR------------AHNAGCRVLSVGYQGKFIH----- 278
           E + K    ++ ADD       KR            A+   C+ +++G  G F+      
Sbjct: 599 ERVNKYGYVVLNADDPIVAGFDKRTEAKVIYFSLDPANRKLCKHIALGGTGIFVDKNQIK 658

Query: 279 ------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 ++++C I N   + ++  GK          +  + N L A G C A+G  ++ +
Sbjct: 659 LGQGFDVQQICKIQN---IPLTWSGK---------AKHNIENILAAIGACWALGYSASQM 706

Query: 333 LEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            + L+K         GR E+   N  G  I +DYAH    L+  +  +R I   RII   
Sbjct: 707 RKSLKKFGSENKDNYGRLEYYEVN--GVTIILDYAHNCAGLKEAISTLRQIKKRRIIGCI 764

Query: 389 GCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKG- 443
           G  GDR         +IA     DI I  D   R     +I AEI+H      GF EK  
Sbjct: 765 GLPGDRRNEMVKKYARIAAQGFDDIFIKEDLCKRGRQTGEI-AEILHNELIKAGFQEKNL 823

Query: 444 ----NRIEAIRTAIEMLNKQDVLVV 464
               +  E+ R AI      D++VV
Sbjct: 824 KKVLDEKESFRQAISQAEPGDIVVV 848


>gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
 gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
          Length = 460

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 43/372 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85
           K+  +S+DSR ++   +F+ + G K DG  F+  AI +GA A++ +   +   L+DFS  
Sbjct: 24  KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAVITARLDNVECLKDFSVN 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 ++ V+ T + L   AS    K     +AVTG+SGK++    + QI  +     +
Sbjct: 84  ------VIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KY 133

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++  T    +F  +N +  P  I+  +    ++        VE   +G  + R   +K I
Sbjct: 134 KVLKTE--GNF--NNEIGLPLTIFNLEDTHQIA-------VVEMGMNGFGEIR--RLKNI 180

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           A      FTN+G  HI+   +++    AK  L E    +E+  ++ ADD     + K   
Sbjct: 181 AEPQVAVFTNIGVAHIEKLGSRENILKAKTELIEN-FKEENVIVLNADDDM---LSKIPL 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDF--DFLFPLPGEFQVYNALVA 318
               +    G +   I   K C I  +++ +  +++ K+   +    +PG   VYN+L A
Sbjct: 237 QYSSKYYRYGIKSGEI---KACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAA 293

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             + +  GI+   + E L+     PG+           +I  D Y    +S++  L  +R
Sbjct: 294 ICVGLEFGINVEDMAEALKDFQ--PGKMRLNIIKIGDIKIIDDVYNANPDSMKAALSVLR 351

Query: 378 TITSGRIIVVFG 389
            + + R I V G
Sbjct: 352 DLPAKRKIAVLG 363


>gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 453

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 163/379 (43%), Gaps = 49/379 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  R I  V+ DSR I+   +F+   G   DGH F+ QA+  GA A     ++  +D S
Sbjct: 20  QYLNRSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGA-----SFYQKDVS 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +     PI+ VD+T + L   A          ++AVTG++GK++    ++ +      +
Sbjct: 75  LSENIEGPIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLN----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202
            F++  T        +N +  P        L+ L     T +S+ E    G   H ++ +
Sbjct: 131 EFKVKKTQG----NYNNEIGMP--------LTILDLDKDTDISILEMGMSGF--HEIELL 176

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257
             IA       TN+G  H+    +++    AK  +   L P  +   IY  D+   K  +
Sbjct: 177 STIAEPDIAVITNIGESHMQDLGSREGIAQAKSEITIGLKP--NGTFIYDGDEPLLKPHV 234

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEF 310
           ++   A C  +S+G  QG  +    VC+++ +    I  EG  F       +  P+ G  
Sbjct: 235 EQIQQANC--ISIGLEQGNSL----VCSVNEE----IDTEGIAFTINHQQQYELPILGIH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA +A  +   +G+    +  +++++ +   R E   T  +   I   Y  +  S++
Sbjct: 285 NMKNAAIAIAIGQELGLSYETIQHNIKRVKLTGMRMERHETEQQVTVINDAYNASPTSMK 344

Query: 371 MILKNIRTITSGRIIVVFG 389
             +  +  + +GR I+V G
Sbjct: 345 AAIDTLSNM-NGRKIIVLG 362


>gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
 gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
          Length = 452

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 162/397 (40%), Gaps = 45/397 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  ++  +  N + +     + ++I  V  DSR I+ G++++  VG + DGH FIPQ
Sbjct: 1   MKNMTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +GA   +     S +D +       P + V++    L   A     +    I+ +TG
Sbjct: 61  VFDKGALCTL-----SEKDLN---NPKGPYIKVESVATALKDIAEFYRKQLSCKIIGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  + +      F++  T        +N +  P  I     L       V
Sbjct: 113 SVGKTSTKEIIASVLEE----KFKVLKTEG----NYNNEIGEPLTI-----LKIRDEHEV 159

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + +  S    + HRL  + +      TN+G  H++    +   F AK  +F +   K+
Sbjct: 160 AVIEMGISDFE-EMHRLAKVSRPDVCVITNIGTCHLENLGDRDGVFKAKTEMF-DYASKD 217

Query: 242 SPAIIYADD---AYSKEVMKRAH-----NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++  DD   +  KEV   A      +    V+++ Y+   I   K         V I
Sbjct: 218 CFVVLNGDDDKLSNVKEVNGHAPVFFGIDTDRDVMAIKYESLGIQGTK---------VKI 268

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K+ D + P+PG   +YNA+ A  +    G+    +   +  L  + GR     TN 
Sbjct: 269 KYFDKELDTVIPIPGYHMIYNAMAAVCIGSYFGMTLDEIDSGIRNLKAIGGRNNIFTTN- 327

Query: 354 RGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFG 389
             G   +D  + +N + M    N+ +  +GR + + G
Sbjct: 328 --GITVIDDCYNANPMSMKASINVLSQANGRKVAILG 362


>gi|146279501|ref|YP_001169659.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557742|gb|ABP72354.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1279

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 130/332 (39%), Gaps = 46/332 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A+ A+ +V S A               I V    R    L A RL        + V G+
Sbjct: 61  LARAADCVVASPAIPETHVERRAARRAGIPVKTRARMLAELIADRL-------TICVAGS 113

Query: 124 SGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDN----RLTTPSPIYLAKALSYL 177
            GKS+V + +  I   +G   F   +G     +SFA       RL  P   ++ +A    
Sbjct: 114 HGKSTVTAMLIHILSAAGKDDFGYMLG-----ASFADPGIVPARLGAPDAPFVTEA---- 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                        +HG   H L    ++    TNL  DH D++        A    F   
Sbjct: 165 -----------CEAHGALAHWLPSHAIL----TNLDDDHADHYGGPSGLRRA-FSAFLSR 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP E  A+   DD    ++++ A    C  L+ G++ +   L+ V A       T+ + G
Sbjct: 209 LPPEGRAVACGDDLDVVDILREAR---CAALTYGFRDENA-LRAVQA--GDGSATVFLHG 262

Query: 298 KDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +   L   +PG   + NAL A G+ + +GI        L   H +  R   +GT S+  
Sbjct: 263 TELGALSLAVPGRHNLLNALAALGMALTLGIGFRTATGALADFHGIARRLSRIGTGSQ-P 321

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           RI+ D+AH    +   +  +R  T GR+I + 
Sbjct: 322 RIFDDFAHHPTEIAASIAVLRETTQGRLIAIL 353


>gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 465

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 156/369 (42%), Gaps = 48/369 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR  + G +FV + G + DGH F  +A+ QGA A++ S    L D +A      P+
Sbjct: 5   VVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASR--PLPDVAA------PV 56

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V++T + L   A+   GK    ++ VTGT+GK+S+   + Q+    G         + 
Sbjct: 57  LLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRG--------KTA 108

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EAS-SHGLDQHRLDG-IKLIAGSF 209
            ++   +N++  P  +        L++ G     V EA  SH  D   L   I+   G  
Sbjct: 109 RNALNHNNQIGMPCTV--------LNTDGDEDFWVIEAGISHAGDMDELAPVIRPDLGLI 160

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL 268
            N+G  H +    +   ++ K RL    L +    ++ AD  Y   V +  A  A  R  
Sbjct: 161 LNVGPGHTEGLGDRGVAWH-KARLLAH-LAQGGLGLVSAD--YPDLVREAGATGAKLRFF 216

Query: 269 SVG-----YQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           S G     Y+  ++         +  +    + ++G   D + P  G +   N++  A  
Sbjct: 217 SAGAHEVEYRADYVGPATEAGGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENSIAVAAA 276

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVDYAHTSNSLEM--ILKNIR 377
              +G+  A + E L +  + P RF  E VG         +D  + +N L M  +L+   
Sbjct: 277 AHLLGLSPAEIAEGLGRAQLPPQRFNRERVGAWE-----IIDDTYNANPLSMRRMLETAA 331

Query: 378 TITSGRIIV 386
               GR  V
Sbjct: 332 GQARGRAFV 340


>gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Haemophilus influenzae F3031]
 gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3031]
          Length = 457

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q  +++I  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 76  SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
 gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
          Length = 457

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 134/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q+ S+ +  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 77  -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  + NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|18311195|ref|NP_563129.1| cyanophycin synthetase [Clostridium perfringens str. 13]
 gi|18145878|dbj|BAB81919.1| cyanophycin synthetase [Clostridium perfringens str. 13]
          Length = 874

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 171/405 (42%), Gaps = 35/405 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +     L  F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH  
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ID     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324
           +     L      +  + + +   GK++      +  F + G+ +  + NA+ A    + 
Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +D  ++ + L++         GRF     N  G  + +DYAH  +  ++++ +++ + 
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GINVILDYAHNIDGYKVVIDSLKNLG 754

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              I  + G  GDRD      +G+I+ D  D I I  D + R +D  ++ + I  G+   
Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             K   +       EA+R  +++  K + +++  + +E+++ + N
Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859


>gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 457

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 135/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q  +++I  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 76  SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  + NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGAKLADVKAGLEQRSQVKGRL 319


>gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 461

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 43/372 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85
           K+  +S+DSR ++   +F+ + G K DG  F+  AI +GA A++ +   +   L+DFS  
Sbjct: 25  KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAVITARLDNVECLKDFSVN 84

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 ++ V+ T + L   AS    K     +AVTG+SGK++    + QI  +     +
Sbjct: 85  ------VIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KY 134

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++  T    +F  +N +  P  I+  +    ++        VE   +G  + R   +K I
Sbjct: 135 KVLKTE--GNF--NNEIGLPLTIFNLEDTHQIA-------VVEMGMNGFGEIR--RLKNI 181

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           A      FTN+G  HI+   +++    AK  L E    +E+  ++ ADD     + K   
Sbjct: 182 AEPQVAVFTNIGVAHIEKLGSRENILKAKTELIEN-FKEENVIVLNADDDM---LSKIPL 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDF--DFLFPLPGEFQVYNALVA 318
               +    G +   I   K C I  +++ +  +++ K+   +    +PG   VYN+L A
Sbjct: 238 QYSSKYYRYGIKSGEI---KACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             + +  GI+   + E L+     PG+           +I  D Y    +S++  L  +R
Sbjct: 295 ICVGLEFGINVEDMAEALKDFQ--PGKMRLNIIKIGDIKIIDDVYNANPDSMKAALSVLR 352

Query: 378 TITSGRIIVVFG 389
            + + R I V G
Sbjct: 353 DLPAKRKIAVLG 364


>gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes LO28]
          Length = 178

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 13/183 (7%)

Query: 13  ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+  GA AI
Sbjct: 5   ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAVAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +      +         + P++ V ++++ +++ A   YG   +   ++ +TGT+GK++V
Sbjct: 65  IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  V+QI + +G  +  IG     I     + + TTP  + L +    +   GV+   +E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 189 ASS 191
            SS
Sbjct: 176 VSS 178


>gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
 gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
          Length = 476

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 26/229 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR    G +FVA VG + DGH F  + +  GA A++ S    +           P 
Sbjct: 31  VVRDSREAGPGSLFVAFVGERVDGHDFAARVVEAGAAAVLASRPVGV-----------PA 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VV++ +  L   A  + G+    ++A+TG++GK+S    + Q+ QR G + F  G  + 
Sbjct: 80  IVVEDVQAALGALARHVVGRLGTTLVALTGSAGKTSTKDLIAQVLQRHGPTVFTPGSLNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      T    +L   +  + ++G+ H+       GL   R+       G   N+
Sbjct: 140 EIGLPLTALTATEETKFL---VLEMGARGIGHIRYLT---GLTPPRV-------GLVLNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKR 259
           G  HI     ++    AK  L E L P E    AI+ ADD   + +  R
Sbjct: 187 GSAHIGEFGGREQIAQAKGELVEALPPAEEGGAAILNADDPLVRAMASR 235


>gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 453

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 176/413 (42%), Gaps = 39/413 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQD 81
           ++  E    ++S+D+R I    +F+A+ GN  +G+ ++ +AI  GA  AI+    + L++
Sbjct: 18  IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGATVAIIDEVNFKLEE 77

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               +     ++ V + +  L   A     K    ++ +TG++GK+S    V        
Sbjct: 78  ----LNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITGSTGKTSTKDLV-------- 125

Query: 142 LSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRL 199
            ++F  G  S   +    +N +  P  I+       L S     V +E  ++  D+ HRL
Sbjct: 126 -AAFLSGKYSVFKTKGNFNNEIGLPLMIF------ELDSSYDIAV-LEMGTNNFDEIHRL 177

Query: 200 DGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             I +      TN+G  HI+Y +T++     K  + +      +  I Y +D   K  + 
Sbjct: 178 TNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQK--VN 235

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNAL 316
             H    ++  +GY  K+ ++ + +           ++  G+   F   + GE  + NAL
Sbjct: 236 EDHE--FKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNAL 293

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
           +   +    GI    +   L        R EF+  N+    I  D Y  + +S++  L  
Sbjct: 294 LGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNF--TIINDCYNASPDSMKSALSV 351

Query: 376 IRTITSGRIIVVFG-CG--GDRDQGKRPIMGKIALDLADIAIVTD---DNPRS 422
           ++T +  R I V G  G  GD  +    I+GK A+  ADI + T    DN +S
Sbjct: 352 LKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTTGEFRDNYKS 404


>gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 450

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 178/402 (44%), Gaps = 48/402 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRSN 89
           N++S+D+R IQ   +F+A+ G   +G+ +  QAI +GA  I++    + +++    +++ 
Sbjct: 26  NKISTDTRKIQENNLFIALKGENFNGNDYTIQAIEKGASIIIIDDVKFKIEE----LKNR 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I+ V +T++ L   A     K    ++ +TG++GK+S    V         ++F  G 
Sbjct: 82  GTIIKVKDTKEALGDLARFYRKKIGVKVVGITGSTGKTSTKDLV---------AAFLSGK 132

Query: 150 TSTISSFAQ-DNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IA 206
                +    +N +  P  I+ L+K         +  + +  S+ G + ++L  I L   
Sbjct: 133 YKVFKTQGNFNNEIGLPLMIFELSKDYD------IAVLEMGMSNFG-EINKLASIALPDV 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G+ TN+G  HI+Y +T++     KM +  +    ++  I+  ++   K +++      C 
Sbjct: 186 GAITNIGVAHIEYLKTRENILKEKMSI-TDFFENKNSLIVNCENDMLKTIVE------CD 238

Query: 267 VLS---VGYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             +   VGY   +    K   +   N     ++ + +++ F   + GE  V NAL+    
Sbjct: 239 KFNLERVGYDSTYNLYSKNIKLTSENTSFDVVTDDNENYRFTLNMVGEHNVLNALIG--- 295

Query: 322 CIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            I I  +  L  E +EK     +    R E +  + +   I   Y    +S++  L+ ++
Sbjct: 296 -IQIARNFGLTFEEMEKGLGNFNATSMRLEVINKD-KFTIINDSYNANPDSMKAALEVLK 353

Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             +  R I V G     GD  +     +G+ A D ADI + T
Sbjct: 354 NYSGSRKIAVLGTMGELGDYAEEAHIQVGEFAKDKADILLTT 395


>gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 518

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 147/370 (39%), Gaps = 64/370 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQDFSA 84
           DSR I  G +FVA+ G   DGH F   AIAQGA            A+++  A   +  ++
Sbjct: 34  DSRKITPGGLFVALPGKHVDGHNFARDAIAQGAAGVLAAKDVGVAAVIMPKAAKREGDNS 93

Query: 85  TIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            + +N P      VV    K  S  AS L  +H  +I+ +TG++GK+S    V  +   +
Sbjct: 94  GLAANDPDGSAAGVVSGMSKLASYVASTLTAEHGLSIVGITGSAGKTSTKDLVASVLSAA 153

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVEASSHGLD 195
           G +   + P  +      +N L  P  +          ++ +S++G+ H++         
Sbjct: 154 GQT---VAPPGSF-----NNELGHPYTVLRCTESTKFLVAEMSARGIGHIA--------- 196

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAY 252
            H         G   N+G  H+    +++    AK  L E  LP  +    AI+ ADD  
Sbjct: 197 -HLATIAPPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEA-LPSAAEGGVAILNADDPL 254

Query: 253 SKEVMKRAHNAGCRVLS-------VGYQGKFIHLKKVC----AIHNKQQVTISVEGKDFD 301
              +  R      RV++         Y    I L  V      +H+       VE   F 
Sbjct: 255 VAGMAPRTR---ARVVTFSGQHGAADYYATDISLDDVTRASFTLHSPHNEPQRVELNVF- 310

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                 G  QV NAL AA + I  GID+A V   L   H   G    V T + G  +  D
Sbjct: 311 ------GAHQVSNALAAAAVGIESGIDAATVARSLSSAHGESGNRMDVQTRADGVTVIND 364

Query: 362 YAHTSNSLEM 371
            A+ +N   M
Sbjct: 365 -AYNANPDSM 373


>gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 458

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 154/374 (41%), Gaps = 65/374 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R +Q G +FVA+ G   DGH F+   +   A  ++VS           + +  P 
Sbjct: 27  VSTDTRSLQHGQLFVALTGPTYDGHAFVSDDLP--AAGVMVSR---------LLPTRLPQ 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--------RSGLSS 144
           ++VD+TR  L   A       P  +LA+TG++GK++V   +  I +        R  L++
Sbjct: 76  VLVDDTRLALGRLARAWRESLPVTVLALTGSNGKTTVKEMLSAIAREHAPTLATRGNLNN 135

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG   T+   A+++R                       V + A+ HG   +     + 
Sbjct: 136 -DIGVPLTLLEMARNHRYAV--------------------VEMGANHHGEIAYLTSLARP 174

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H++   + +    AK  ++  L P +  A+I ADD Y+        N G
Sbjct: 175 DVALITNAGPAHLEGFGSIEGVSRAKGEIYSGLGP-DGVAVINADDIYAD--YWYGLNPG 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            RV+S G       L  V  +  + Q    + + + G+        PG     NAL AA 
Sbjct: 232 RRVISFG-------LDHVAEVSGEWQAPGSLRLHMNGRVHALELAFPGRHNALNALAAAA 284

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +   I    +L  L ++H V GR   V    RGG + +D ++ +N            T
Sbjct: 285 AALGAEIPEEAILRGLARVHPVSGR--LVAVPGRGGALLLDDSYNANPAS---------T 333

Query: 381 SGRIIVVFGCGGDR 394
              + V+ G GG+R
Sbjct: 334 RAALEVLSGHGGER 347


>gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 459

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 136/305 (44%), Gaps = 41/305 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++   KI  VS DSR I+   +++ IVG K DG +FI +    G+ A ++      ++F 
Sbjct: 21  EYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQNAGSPAFLID-----KNFK 75

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKS-------SVASFVQQ 135
                N P ++VD+T+K L   A R Y K  +  I+A+TG++GK+       SV S   +
Sbjct: 76  IPKSINIPYIIVDDTQKALRDLA-RAYRKELDIKIIAITGSNGKTTSKNIIHSVLSEKYK 134

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + +  G  + +IG   TI  F++D  +           +  + +     +SV  +    D
Sbjct: 135 VEKTHGNLNNEIGVPLTILDFSEDTDI----------GVVEMGTDDFGEISVLTNIARPD 184

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSK 254
              +          TN+G  H+   +T++    AK+ + E L  K+    +Y  DD   K
Sbjct: 185 MAMI----------TNIGDAHLLKLKTREGIAKAKLEILEGL--KDDGIFLYNGDDEILK 232

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +V+  ++    + +S G  G  +  K     +       S   KD ++  PL G  QVYN
Sbjct: 233 KVLP-SYEIKQKTISFG-MGDKVDFKVEAKEYTSTSTNFSY--KDENYSVPLLGSHQVYN 288

Query: 315 ALVAA 319
             +A 
Sbjct: 289 GALAV 293


>gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
 gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
          Length = 473

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 195/463 (42%), Gaps = 48/463 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +DSR IQ G +FV IVG K DGH F+   +A GA A     A+  +D    + ++
Sbjct: 27  IQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLAGGAGA-----AFWQRDHQP-VPAD 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V++T K L   A+    +    ++ +TG++GK++V   V  + +    +++ +  
Sbjct: 81  LPLIFVEDTLKALQSLAAAYLSESRAKVVGITGSNGKTTVKDMVSALLE----TTYNVHK 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGS 208
           T        +N +  P        L+ L+ +  T + V E    G  +H ++ +  IA  
Sbjct: 137 TQG----NYNNHIGLP--------LTVLAMKEDTDIIVLEMGMSG--RHEIELLSNIARP 182

Query: 209 ----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA- 263
                TN+G  H+    +++    AK+ +   + P     I + D+   ++V+       
Sbjct: 183 DLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPG-GLLIYHGDEPLIRQVLAEEATVK 241

Query: 264 --GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G R  + G Q            H +  +  S       F  PL G   V NAL A  +
Sbjct: 242 PEGLRTFTFGNQDTNDDYPTGLMFHARGIIFTSSRHAGEGFSLPLLGRHNVVNALAAMAV 301

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +GI    +      L +   R E V T + G  +  D  ++S +      ++     
Sbjct: 302 ATHLGIGDEAIRSGFAHLKLSSMRIEAVET-AFGVTVLNDAYNSSPTAVKAAVDVLGDMK 360

Query: 382 G--RIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRS-EDPEKIRAEIIH 434
           G  R I V G     G R++     +G+ ++ D AD+       P S     K +A    
Sbjct: 361 GYRRRIAVLGDMLELGQREESFHAEIGEYLSPDNADLVFTY--GPLSLHTANKAKARFPE 418

Query: 435 G-IPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIV 475
           G +  F +K   IEA+   +E + ++D VLV A +G    H+V
Sbjct: 419 GAVLSFTDKEKLIEAL---LEQVTEKDIVLVKASRGMRLEHVV 458


>gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
 gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
          Length = 462

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 49/374 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS      +FS   +  +
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVSKS 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + ++ V+NT K L   A     K    ++A+TG++GK+S    V  +        +++  
Sbjct: 83  SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I  
Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +++    AK+ +  +   K+S  II  DD    +++    +   +V
Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316
             +G   KF          N   + +  E   FD           F   +PG+  V N+L
Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIKFDILERGKTAYRCFSVNVPGKHNVLNSL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A      + I+   +   ++ L     R + V    +G  I  D Y  + +S++  +  
Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352

Query: 376 IRTITSGRIIVVFG 389
           ++ I   R I + G
Sbjct: 353 MKNIKGKRTIALLG 366


>gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 462

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 49/374 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS      +FS   +  +
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVGKS 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + ++ V+NT K L   A     K    ++A+TG++GK+S    V  +        +++  
Sbjct: 83  SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I  
Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +++    AK+ +  +   K+S  II  DD    +++    +   +V
Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316
             +G   KF          N   + +  E  +FD           F   +PG+  V N+L
Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A      + I+   +   ++ L     R + V    +G  I  D Y  + +S++  +  
Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352

Query: 376 IRTITSGRIIVVFG 389
           ++ I   R I + G
Sbjct: 353 MKNIKGKRAIALLG 366


>gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC BAA-2158]
          Length = 452

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 27/334 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +R I +V++D+R    G +F+A+ G + D H F+  AI  G  A++VS
Sbjct: 9   VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               ++          P +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSH 192
            I +  G + +  G      +F  +N +  P  +   K     +    G  H    A + 
Sbjct: 120 AILRECGETLYTTG------NF--NNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTS 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL       ++  +    NL   H++   +      AK  +F  L P    AII +D   
Sbjct: 172 GL-------VRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINSDSND 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                +  H       S        +   V         T+     D D + PLPG   +
Sbjct: 224 WPHWQQALHAKTIWRFSPEQADSDFYAANVTISAQGTHFTLHSPQGDVDVILPLPGRHNI 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            NAL A+ L +++G   + V + L  L  VPGR 
Sbjct: 284 ANALAASALALSVGAPLSAVRQGLSTLKAVPGRL 317


>gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
 gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
          Length = 492

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 31/292 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR + AG +FVA  G   DGH F+PQA A GA  + ++    L D  A      P 
Sbjct: 31  VTTDSREVTAGTLFVAKPGETTDGHAFVPQAAAAGA-VLNLTEREVLDDTGAPY----PS 85

Query: 93  LVVDNTRKFLSLFAS----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +VV +  + +   AS    RL   HP  ++AVTG+ GK++    +  I    G +   + 
Sbjct: 86  VVVADVVQAMGALASHVLQRLRAAHPVTVVAVTGSVGKTTTKDLLHGIFAAEGPT---VA 142

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           P ++      +  +  P  ++ A+  +  ++   G TH+       G  ++  + ++   
Sbjct: 143 PRNSY-----NGEVGVPLTVFTAEQDTEFFVVEMGATHI-------GNIRYLCEMVRPDV 190

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G+   +G  H       +    AK  + E L P E  A++  DDA  + + +R      R
Sbjct: 191 GAVLCVGSAHAGEFGGVENIARAKGEMVECLAP-EGTAVLNDDDARVRPMRERTT---AR 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALV 317
           V+S G  G+             + VT   +G   F   FP    F V++ L+
Sbjct: 247 VVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCPSFTLHFPDGSAFPVHSRLI 298


>gi|220912340|ref|YP_002487649.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859218|gb|ACL39560.1| UDP-N-acetylmuramate/alanine ligase [Arthrobacter chlorophenolicus
           A6]
          Length = 464

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 144/342 (42%), Gaps = 62/342 (18%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + ++ + GT GKS+  S V  + Q +GL  SF IG  + + S   +    T S I++A+A
Sbjct: 118 DTVVTIAGTHGKSTTTSMVTVLLQGAGLDPSFAIG--ANVPSLGVNAAHGT-SGIFVAEA 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                         + S      +R   I ++    TN+  DH+D++ T +A + +  R 
Sbjct: 175 --------------DESDGSFLNYRPQ-IAVV----TNVEADHLDHYGTAEAVYESFDR- 214

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F  LLP +   +  ADD  ++ + +R  NAG  RVL  G  G          +++    +
Sbjct: 215 FAALLPADGLLVACADDPGARALAERTRNAGTTRVLLYGTAGD-----ADLTLYDDGPGS 269

Query: 293 ISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++V   D  FD    +PG     NA  A  + + +G+        L        RFE  G
Sbjct: 270 VAVSTADGRFDLALQVPGRHNALNAAAAFAVALELGVAPGAAASALGSFSGASRRFELKG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI---- 405
             +RG R++ DYAH    +   L   R++    ++ V+F         +  +  +     
Sbjct: 330 -EARGVRVFDDYAHHPTEVRAALTAARSVAGEHKVHVLF---------QPHLFSRTREFA 379

Query: 406 -----ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
                ALDLAD A+V D  P  EDP          IPG   K
Sbjct: 380 REFADALDLADTALVLDIYPAREDP----------IPGVTSK 411


>gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 457

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q  +++I  
Sbjct: 24  QVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 76  SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999]
          Length = 469

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 141/338 (41%), Gaps = 45/338 (13%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  I  VS+D+R I A  +F+A+VG   +GH+F  +A   GA A++ S        
Sbjct: 17  LQGNDLIITNVSTDTREISADSLFIALVGPNFNGHVFANEARQNGAVAMIASE------- 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              + ++ P+++V++T+  L    + +  K     + +TG+SGK++V      I +  G 
Sbjct: 70  --PVEAHMPVIMVEDTKAALGALGAYVKQKVAPKTVGITGSSGKTTVKEMTTAILKECG- 126

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD 200
                   ST  +F  +N +  P  +   +A    +    G  H+   A + GL      
Sbjct: 127 -----SVLSTQGNF--NNDIGVPLTLLRLEAEHEYAVIEMGANHIGEIAYTTGL------ 173

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +K    +  N    H++   +      AK  +F+  L K   AI+  D  +    + + 
Sbjct: 174 -VKPDVATIVNAAASHLEGFGSLFGVARAKSEIFKG-LSKSGTAILNYDSQFYDFWLGKL 231

Query: 261 HNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG----------KDFDFLFPLPGE 309
            N      S+    GK        A ++  QV ++  G           + +    LPG 
Sbjct: 232 DNELIYSFSLNSAPGK-------GADYSASQVGLAFNGCAHFIMHTPIGEMNIELTLPGI 284

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             V NAL+AA L I +G     V + L K+  V GR E
Sbjct: 285 HNVGNALLAAALSINVGASLENVRDGLAKIQHVKGRLE 322


>gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
 gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
          Length = 457

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q+ S+ +  
Sbjct: 24  QVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 77  -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLVGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|218768812|ref|YP_002343324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis Z2491]
 gi|30316128|sp|Q9JSZ5|MURD_NEIMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121052820|emb|CAM09167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis Z2491]
          Length = 445

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 143/327 (43%), Gaps = 45/327 (13%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRK 100
           V+ +G   DG +F    +  A++ G + + +S   S +  D  A  R+   +L       
Sbjct: 43  VSQIGKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKRNGGRVL------G 96

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            + L A  +  +  + ++A+TG++GK++V S V  +C + GL +   G        A+  
Sbjct: 97  DIELLAD-IVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGAPVLEAELQ 155

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           R    + +++                +E SS  L+    + ++  A +  N+  DH+D +
Sbjct: 156 REGKKADVWV----------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y + K ++F      +   ++ ADDA+ +  MKRA     +  S+ Y+  F   +
Sbjct: 198 DDLLDYAHTKAKIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEYEADFWLER 251

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +   +    +  I+ +        PL G     N + A  LC A+G+    +LEH++   
Sbjct: 252 ETGRLKQGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +P R E +G   + G +++D +  +N
Sbjct: 306 GLPHRVEKIG--EKNGVVFIDDSKGTN 330


>gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
 gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
          Length = 454

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 149/369 (40%), Gaps = 38/369 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+DSR I    +F+A+ G + D H F  Q +  GA+A++V    ++         +
Sbjct: 27  ISSVSTDSRKIAENCLFIALKGERFDAHDFAQQVVVTGAKALLVERKLNV---------D 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V ++R  +   A+ +  +    I+ +TG+SGK+SV      I    G + +  G 
Sbjct: 78  CPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGSSGKTSVKEMTASILSERGKTLYTAGN 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                    +N +  P  ++        +    G  H +  A +  +       +K  A 
Sbjct: 138 L--------NNDIGVPLTLFRLTNDDEFAVIEMGANHPNEIAYTTNI-------VKPEAA 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NL   H+    + +    AK  +++ + P+E  AI+  D    K   +         
Sbjct: 183 LVNNLFAAHLAGFGSPEGVATAKGEIYQGV-PEEGTAIVNLDSYSEKWQFQPRQTVWYYS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           L+   +  F        I  KQ  T   +       D   PLPG   + N L A+ L I+
Sbjct: 242 LTSQAKADFYP----SDIQVKQLTTDFVLHTPVGSVDITLPLPGRHNIANVLAASALAIS 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSG 382
           +G     +   + K   VPGR   V  +    ++ +D  + +N   MI  ++ +  +   
Sbjct: 298 VGASLEDIKNGIAKTQAVPGRLYPVRLSEH--KVVLDDTYNANDGSMIAAIQVLEKMPGY 355

Query: 383 RIIVVFGCG 391
           RI+VV   G
Sbjct: 356 RILVVGDMG 364


>gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Clostridium botulinum F str. 230613]
          Length = 462

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 49/374 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS      +FS   +  +
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVGKS 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + ++ V+NT K L   A     K    ++A+TG++GK+S    V  +        +++  
Sbjct: 83  SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVGAVLAE----KYKVFK 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I  
Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +++    AK+ +  +   K+S  II  DD    +++    +   +V
Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQVYNAL 316
             +G   KF          N   + +  E  +FD L             +PG+  V N+L
Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A      + I+   +   ++ L     R + V    +G  I  D Y  + +S++  +  
Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352

Query: 376 IRTITSGRIIVVFG 389
           ++ I   R I + G
Sbjct: 353 MKNIKGKRTIALLG 366


>gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 851

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 161/399 (40%), Gaps = 49/399 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  Q G +F+A+   + DGH FI  AIA GA  +V   A S+      I ++  +++ 
Sbjct: 29  DSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGVVCQYAPSV------IPASITVIIC 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++    L  +A   + KH    +A+TG+ GK+S    + Q+      S + +    +  S
Sbjct: 83  NDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAIAQVLA----SRYSV--LRSPRS 136

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F  D        + L+  ++ L++Q    +   A   G             G  TN+G  
Sbjct: 137 FNAD--------LGLSVTMAELAAQQWAVLEFGADHPGEIAQLCQLFPPEIGIVTNVGSA 188

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+    +Q A  + K  + ++ LP    AI+  DD     + +R H    R+L VG    
Sbjct: 189 HLGAFGSQAAIAHEKAAIIQQ-LPAHGYAILNGDDPLVAAMAERTH---ARLLRVGQ--- 241

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFP--LPGEFQVYNALV----AAGLCIAIGIDS 329
                  C I     VT +V+   F    P   P   Q+  + V    AA   IA+G  +
Sbjct: 242 ----NAACEI-RWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYVA 296

Query: 330 ALVL----EHLEKLHVVPGRFE-FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            L L    E L  L    GRF   VG N  G  I  D +     S+   L+ + ++ + R
Sbjct: 297 GLSLAEMREALADLRPAHGRFNPLVGRN--GATIIDDTFNAAPESVYAALQTLGSLPARR 354

Query: 384 IIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTDDN 419
            I + G   +            G+IA   AD+ I   D 
Sbjct: 355 RIAILGDMAELGAASARFHQQAGQIAAQHADLLITKGDQ 393


>gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
 gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
          Length = 473

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 157/351 (44%), Gaps = 38/351 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR +  G IF  I G+  DGH F  QA  +GA  ++V+  + L+D     + + P+
Sbjct: 29  VSIDSRTLAEGDIFFCIKGHHLDGHDFAAQAYERGAGVLIVAE-HRLRDMK---KISAPL 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VV +  + L   A     +    I+A+TG+ GK++    ++Q    +G         + 
Sbjct: 85  IVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTTKEALKQALAMTG---------NV 135

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSF 209
            ++ A  N      P+ LA+ +   S  G+  + +   +H  +   L  +KL+       
Sbjct: 136 HANLASLNN-CWGVPLTLAR-MPIESDYGIFEIGM---NHRDEIRPL--VKLVCPHVALI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268
           T++   H+ + +  +    AK  +FE  L ++  AI+ AD  +   ++++A   G + +L
Sbjct: 189 THICAGHMGFFKNLEEIAKAKAEIFEG-LDEKGIAILNADSDFFSYLVQKAKKCGVKNIL 247

Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           S G      YQ + I L     + ++  + + +  +D +     PG   V N+L     C
Sbjct: 248 SFGESKNADYQARDIRL-----LTDRSSMIVRIRERDREVQIGAPGRHIVQNSLGVIAAC 302

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIY-VDYAHTSNSLEM 371
            A+G++   VL          GR   +  + S GG  Y +D ++ +N   M
Sbjct: 303 DAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESYNANPASM 353


>gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. SR1/5]
          Length = 462

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 165/380 (43%), Gaps = 42/380 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  ++ N +   P +  + ++  +++DSR ++ G +FV +VG + D H FIPQ
Sbjct: 1   MKNLTLENITKVCNGIYHGPQEKLQEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A +  S  +L+       ++ P + V ++ + +   A     +    ++ +TG
Sbjct: 61  VMEAGALATL--SERTLEG------ADHPYIQVGSSLQAVKDIAEFYLEQLDIPVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  + +       +     T  +F  +N L  P  ++  +         +
Sbjct: 113 SVGKTSTKEVIASVLKE------KYRTLKTQGNF--NNELGLPLTVFRLR-----DEDEI 159

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + +  S  G +  RL  I K      TN+G  H++    +     AK  +F+ +  K 
Sbjct: 160 AVLEMGISDFG-EMTRLAKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQYV--KR 216

Query: 242 SPAIIYADDAYS--KE-------VMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQV 291
           +  +   DD  S  KE             NA     +V  +G    LK + C I  K ++
Sbjct: 217 NIVLNGDDDKLSTVKEYNSMQPVFFGNGENASVTCENVESRG----LKGMSCDICLKGKM 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             + E + F    P+PG   V NAL AA +    G+++  +   +E L  V GRF  + T
Sbjct: 273 AENGEFQTFHVDIPMPGRHMVSNALAAAAVGRLYGLNAEQIKNGIESLEPVSGRFNMIET 332

Query: 352 NSRGGRIYVDYAHTSNSLEM 371
           +     + VD  + +N + M
Sbjct: 333 DK---FMIVDDCYNANPMSM 349


>gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
 gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
          Length = 453

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 160/365 (43%), Gaps = 36/365 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I++VS+D+R + AG +FVA+ G K D H +   A+  GA A++VS    +         +
Sbjct: 24  ISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDAVNNGAAALLVSKHLPI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVVD+TR  L + A  +  +    ++A+TG+SGK+SV      I ++ G   +  G 
Sbjct: 75  VPQLVVDDTRLALGVMAGWVRQQSRARVVALTGSSGKTSVKEMAASILRQCGNVLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +F  +N +  P  ++ L     Y   + G  H+   A +  +       ++  A 
Sbjct: 134 -----NF--NNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAM-------VRPEAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKEVMKRAHNAG 264
              NL   H++   + +    AK  +F   LP +  AII A   D+A  ++V+       
Sbjct: 180 LVNNLAAAHLEGFGSLEGVAQAKGEIFGG-LPAQGVAIINADSNDEARWQDVLT--GKTL 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R    G+ G   +   +          +     D     PLPG   + NAL A  L + 
Sbjct: 237 WRFSPQGHDGVDFYASDIRVSERGTDAVLHTPMGDIAVTLPLPGHHNIANALAATALALT 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
           +G     V   LE+L  VPGR   +      G++ +D ++ +N  S+    + +  +   
Sbjct: 297 VGASLEAVKVGLEQLQAVPGRLFPIALAP--GKLLLDDSYNANVGSMTAAAQVLAEMPGY 354

Query: 383 RIIVV 387
           R++VV
Sbjct: 355 RVMVV 359


>gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 460

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 142/346 (41%), Gaps = 57/346 (16%)

Query: 22  PMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           PM   +  +  +V +DSR I  G +FVA+ G K DGH F+ QA+  GA A VVS      
Sbjct: 14  PMALEDGEEFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAVVS------ 67

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           +    + ++  ++V D    +  + +     K    ++A+TG++GK+S    +  +    
Sbjct: 68  EVPEGVAADRCVVVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKDCIAAVLG-- 125

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
               +++    T ++F  +N +  P  +   +  + ++        VE    GL Q R  
Sbjct: 126 --ERYRV--IKTQANF--NNEIGLPKTLLTIREDTEMA-------VVEMGMRGLGQIR-- 170

Query: 201 GIKLI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            +K I    A   TN+G  H++   + +    AK  + E+  PK   A +  DD      
Sbjct: 171 AMKHIAYPDAAVITNVGDTHLELLGSLENIAKAKSEILEDFTPKNH-AFLNGDDPR---- 225

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------------ 304
                      +SV   G  +H   + +  + + V IS +G    F +            
Sbjct: 226 -----------VSVMETGAAVHTYGIDSDADVKAVEISADGLRTVFTYRSRITGATQKVQ 274

Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            PL G   V NAL A  +    G+  A +   LE L +   R E +
Sbjct: 275 LPLIGRHNVMNALAAVAVGEVYGVPDAAIARGLENLKMTGMRQEIL 320


>gi|168205550|ref|ZP_02631555.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987]
 gi|170662912|gb|EDT15595.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987]
          Length = 874

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 170/405 (41%), Gaps = 35/405 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +     L  F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH  
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ID     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324
           +     L      +  + + +   GK++      +  F + G+ +  + NA+ A    + 
Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +D  ++ + L++         GRF     N  G  + +DY H  +  ++++ +++ + 
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              I  + G  GDRD      +G+I+ D  D I I  D + R +D  ++ + I  G+   
Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSA 814

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             K   +       EA+R  +++  K + +++  + +E+++ + N
Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859


>gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 459

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 163/396 (41%), Gaps = 51/396 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS +SR    G +F A+ G++ DGH F+P+A+  GA A VVS   SL         
Sbjct: 24  EITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNGALAAVVSRPVSLPQGLG---- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +++V + +K L + A     +   +++ VTG+ GK++         +    + FQ  
Sbjct: 80  ERGLILVRDVKKALQMLARWHRQRFKLHLVGVTGSVGKTTTKDLTATCLE----ARFQTL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKL-IA 206
            T        +N +  P  +     L +     V    VE +   L +   L  I L   
Sbjct: 136 KTEG----NYNNEIGVPLTLL---RLDHRYEACV----VEMAMRNLGEIEELASIALPTC 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMKR 259
           G   N+   H++   + +    AK  LF+ +       +  ++P ++ A + Y+ + ++ 
Sbjct: 185 GIIVNVEPVHLENLGSMERIAQAKCELFKYVDERGFVAINGDNPLLVEAAEKYAVKKVRF 244

Query: 260 AHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              A C  R+L V    +            + ++  S+ G+  +F  P PG    YN + 
Sbjct: 245 GWGANCDDRLLDVNSSSE------------ETRIKASLAGQAAEFCLPFPGSHLAYNVIA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKN 375
           AAG+ + +G+D A +   +        R         GG   +D  + +N + M   L+ 
Sbjct: 293 AAGVAVRLGVDLADIQSKIRSFSPSSRRLNI--KTGLGGITIIDDCYNANPVSMKAGLEV 350

Query: 376 IRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIA 406
           +  + +GR  V     ++  G    QG R +  K A
Sbjct: 351 LSDVAAGRYRVAVLGDMYELGSYEVQGHREVGYKAA 386


>gi|152980553|ref|YP_001354707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Janthinobacterium sp. Marseille]
 gi|151280630|gb|ABR89040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 164/403 (40%), Gaps = 61/403 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GK++V S V  +CQR+GL+    G                 SP  L K    
Sbjct: 121 VIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI---------------SPAALDKLHQV 165

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L+   +  V V E SS  L  H    ++    +  NL +DH+D+H    AY + K R+F 
Sbjct: 166 LTDDQLPQVWVLELSSFQL--HTTYSLQADVATVLNLTQDHLDWHGDMAAYADDKARIFG 223

Query: 236 E------------LLPKESP---AIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                        ++   SP    I + AD+A   +        G R LSV  + +    
Sbjct: 224 SNTIRVLNRDDALVMQMSSPLSKVITFGADEAEQADCFGLVDENGMRWLSVAVEEEEPQK 283

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLP-----GEFQVYNALVAAGLCIAIGIDSALVLE 334
           K+      K  V ++V     + L P+      G+    NAL A  LC AIG+  A +L 
Sbjct: 284 KR----RKKDNVELAVS---TNKLMPVDALKIRGQHNAINALSALALCRAIGLPFAQLLH 336

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITSGRIIVVFG 389
            L   H  P R E V T   GG  Y D +  +N    +     L   +   S  ++++ G
Sbjct: 337 GLRDYHGEPHRVEHVMT--IGGVDYYDDSKGTNVGATVAALNGLGASQDGASNHLVLIAG 394

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G  + Q   P+   +A     + ++       +D + IRA +       I      EA 
Sbjct: 395 -GDGKGQDFSPLADPVAKYARAVILI------GKDADNIRAALQATGVDMINCTTLEEAT 447

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + A E+    D ++++     ++ +  N   +  V  D +REI
Sbjct: 448 QKAAELAQSGDAVLLS-PACASLDMFKNYAHRAQVFVDEVREI 489


>gi|182626262|ref|ZP_02954019.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908441|gb|EDT70979.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721]
          Length = 874

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 170/405 (41%), Gaps = 35/405 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +     L  F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH  
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ID     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324
           +     L      +  + + +   GK++      +  F + G+ +  + NA+ A    + 
Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +D  ++ + L++         GRF     N  G  + +DY H  +  ++++ +++ + 
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              I  + G  GDRD      +G+I+ D  D I I  D + R +D  ++ + I  G+   
Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             K   +       EA+R  +++  K + +++  + +E+++ + N
Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859


>gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M0579]
 gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240149]
 gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis NZ-05/33]
          Length = 445

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 457

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q  +++I  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 76  SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEISYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQGSQVKGRL 319


>gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Shewanella amazonensis SB2B]
 gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella amazonensis SB2B]
          Length = 455

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 162/376 (43%), Gaps = 52/376 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ + SDSR +  G +FVA+ G + DGH F   A A GA A++V     L          
Sbjct: 24  VSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAGASALLVERELPLA--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVV +T+K +    + +        +A+TG++GK+SV   V  +  +     F  G 
Sbjct: 75  LPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKTSVKEMVATVLSQHHSVLFTAG- 133

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                +F  +N +  P + + L +   Y    GV  +   A+  G   +    ++     
Sbjct: 134 -----NF--NNEIGVPLTLLRLEQGHEY----GVFELG--ANHKGEIDYTSSLVRPSVSL 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H++   ++     AK  ++   L ++   I+  DD Y++ ++ +    G RVL
Sbjct: 181 VNNVGSAHLEGFGSEAGVAEAKSEIYLH-LAQDGVGIVNLDDRYAETMLNKLK--GKRVL 237

Query: 269 SVGY-QGKFIHLKKVCA----------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           + G   G  I  ++V A           H    VT+S          PL G+ QV NAL 
Sbjct: 238 TFGLGAGAEITAREVTADAFGRYSFYLCHGGDHVTVS---------LPLAGKHQVSNALA 288

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKN 375
            A +CIA+G+    +   L KL  V GR         G  + VD  Y    NS+   +  
Sbjct: 289 TAAICIALGLPLQEIAAGLAKLAPVKGRMM---PRQLGRLLLVDDSYNANPNSVGAAIDW 345

Query: 376 IRTITSGRIIVVFGCG 391
           ++ I++ R +V+   G
Sbjct: 346 LKEISTNRTLVLGDLG 361


>gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrospira platensis str. Paraca]
          Length = 465

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 40/298 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R++Q G +FVA+ G++ DGH F+  AIA+GA   VVS  +++           P+
Sbjct: 33  ITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAKGALCAVVSREFAVS------HPEFPL 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T +     A     + P  ++ VTG+ GK++    +  +    G      G    
Sbjct: 87  IPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGKTTTKELISAVLSHHGKVHKTFG---- 142

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                 +N +  P      K L  L S     V  +++       D  R+   +   G  
Sbjct: 143 ----NYNNEIGVP------KTLLELRSDHDFAVIEMAMRGPGEIADLTRI--TRPTVGVI 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRV 267
            N+G  HI    ++ A   AK  L  E +P  S A++  D+   + +M  A    AG  +
Sbjct: 191 VNVGTAHIGRLGSEDAIARAKCELLAE-MPDTSIAVLNHDN---RRLMSTATQVWAGTTI 246

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            + G +G  +  + +         TI VEG   D   PLPG     N L A  +  AI
Sbjct: 247 -TYGLEGGILQGELLG------HETIRVEG--IDLPLPLPGSHNASNFLAALAVLRAI 295


>gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha153]
          Length = 445

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
 gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
          Length = 459

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 63/339 (18%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VSSDSR + +  +FVA+ G+  DGH F   A+  GA A++V     +         +
Sbjct: 24  IDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVDAGANALLVERELPI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VV N+++ +    + +  +     +A+TG++GK+SV   +  I  +      Q   
Sbjct: 75  AAQIVVANSQRAMGEIGAYVREQLAPTCVALTGSNGKTSVKEMIATILSQ------QHRV 128

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +F  +N +  P  +   K          G  H      + GL       +K    
Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLKQGDEFGVFELGANHAGEIDYTSGL-------VKPSVA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H++   + +    AK  +F  +    + A+I ADDA++ +VM +A +     
Sbjct: 180 MVNNVASAHLEGFGSLEGVAKAKSEIFNHVTVGGT-AVINADDAFA-DVMLQASS----- 232

Query: 268 LSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKD----------FDFLF---------PLP 307
                     H+K++C  + N+    + V   D          F   +         PL 
Sbjct: 233 ----------HVKQLCFGVKNEASRDLDVFATDLIADSYGRYAFSLCYGAEVHRVELPLA 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           G  QV NAL A  +C+A+G+  A + + L +L  V GR 
Sbjct: 283 GRHQVSNALAATSICLALGLSLAHICQGLSQLKPVKGRM 321


>gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 451

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 41/372 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E +I  V+ DSRH++   +FV   G   DGH F+ QA+  GA A         QD S 
Sbjct: 21  YLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKSGAGASFYEKG---QDISD 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143
           +I+   PI+ VD+T   L   A + Y KH    ++ VTG++GK++    ++ +      +
Sbjct: 78  SIQG--PIIWVDDTLTALQQLA-KAYLKHVNPKVIGVTGSNGKTTTKDMIESVLH----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202
            F++  T        +N +  P        L+ L     T +S+ E    G   H ++ +
Sbjct: 131 EFRVKKTQG----NYNNEIGLP--------LTILQLDKDTEISILEMGMSGF--HEIELL 176

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257
             IA       TN+G  H+    +++    AK  +   L  K     IY  D+   K  +
Sbjct: 177 SKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KSDGTFIYDGDEPLLKPHV 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNA 315
           +   NA  +++SVG   +      VC + N +   +   +  K+  +  P+ G   + NA
Sbjct: 235 ENVKNA--KLVSVGLNHENT---LVCKVENSKNDGIAFMINNKEH-YELPILGIHNMKNA 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +A  +   +G+D   + +++  + +   R E   T+++   I   Y  +  S++  +  
Sbjct: 289 TIAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDT 348

Query: 376 IRTITSGRIIVV 387
           +  +   +IIV+
Sbjct: 349 LSHMNGRKIIVL 360


>gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
 gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
          Length = 451

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 41/372 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E +I  V+ DSRH++   +FV   G   DGH F+ QA+  GA A         QD S 
Sbjct: 21  YLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKDGAGASFYEKG---QDISD 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143
           +I+   PI+ VD+T   L   A + Y KH    ++ VTG++GK++    ++ +      +
Sbjct: 78  SIQG--PIIWVDDTLTALQQLA-KAYLKHVNPKVIGVTGSNGKTTTKDMIESVLH----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202
            F++  T        +N +  P        L+ L     T +S+ E    G   H ++ +
Sbjct: 131 EFRVKKTQG----NYNNEIGLP--------LTILQLDKDTEISILEMGMSGF--HEIELL 176

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257
             IA       TN+G  H+    +++    AK  +   L  K     IY  D+   K  +
Sbjct: 177 SKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KSDGTFIYDGDEPLLKPHV 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNA 315
           +   NA  +++SVG   +      VC + N +   +   +  K+  +  P+ G   + NA
Sbjct: 235 ENVKNA--KLVSVGLNHENT---LVCKVENSKNDGIAFMINNKEH-YELPILGIHNMKNA 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +A  +   +G+D   + +++  + +   R E   T+++   I   Y  +  S++  +  
Sbjct: 289 TIAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDT 348

Query: 376 IRTITSGRIIVV 387
           +  +   +IIV+
Sbjct: 349 LSHMNGRKIIVL 360


>gi|168215842|ref|ZP_02641467.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239]
 gi|182381983|gb|EDT79462.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239]
          Length = 874

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 170/405 (41%), Gaps = 35/405 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +     L  F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH  
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ID     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324
           +     L      +  + + +   GK++      +  F + G+ +  + NA+ A    + 
Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +D  ++ + L++         GRF     N  G  + +DY H  +  ++++ +++ + 
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              I  + G  GDRD      +G+I+ D  D I I  D + R +D  ++ + I  G+   
Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             K   +       EA+R  +++  K + +++  + +E+++ + N
Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859


>gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
 gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC 49946]
 gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
          Length = 452

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 27/334 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +R I +V++D+R    G +F+A+ G + D H F+  AI  G  A++VS
Sbjct: 9   VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               ++          P +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSH 192
            I +  G + +  G      +F  +N +  P  +   K     +    G  H    A + 
Sbjct: 120 AILRECGETLYTTG------NF--NNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTS 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL       ++  +    NL   H++   +      AK  +F  L P    AII +D   
Sbjct: 172 GL-------VRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINSDSND 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                +  H       S        +   V         T+     D D + PLPG   +
Sbjct: 224 WPHWQQALHAKTVWRFSPEQADSDFYAANVTISAQGTHFTLHSPLGDVDVILPLPGRHNI 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            NAL A+ L +++G   + V + L  L  VPGR 
Sbjct: 284 ANALAASALALSVGAPLSAVRQGLSTLKAVPGRL 317


>gi|94991840|ref|YP_599939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94545348|gb|ABF35395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 353

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 21/242 (8%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A     K D   
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ +AI  G +  +    Y L           P+++V + +K +SL A   YG   E + 
Sbjct: 62  YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            LA TGT GK++ A F   + + S   + F    T+        ++LTTP  + L   ++
Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
              + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L
Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL 232

Query: 234 FE 235
            E
Sbjct: 233 ME 234


>gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 453

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 160/373 (42%), Gaps = 44/373 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS    +         +
Sbjct: 24  IEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHLPI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR  L    + +  +    ++A+TG+SGK+SV      I ++ G   +  G 
Sbjct: 75  VPQLLVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    P+ L   L   +      + + A+  G   +  D ++  +   
Sbjct: 134 -----NFNNDIGV----PLTL---LRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRA 260
            NL   H++   +      AK  +F   LP +  AI+ AD             K V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAQAKGEIFAG-LPADGVAIVNADSNDFPHWQVTLNHKTVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A C +        F     V  +    + T+     +   L PLPG+  + NAL AA 
Sbjct: 241 PQAACDI-------DFFA-SDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAAS 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +++G     V   L +L  VPGR   +  +   G++ +D ++ +N  S+    + +  
Sbjct: 293 LAMSVGATLEAVKAGLSQLQAVPGRLFPIALSE--GKLLLDDSYNANVGSMTAAAQVLAE 350

Query: 379 ITSGRIIVVFGCG 391
           +   R++VV   G
Sbjct: 351 MPGYRVMVVGDMG 363


>gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
 gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
          Length = 457

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 137/309 (44%), Gaps = 37/309 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +++DSR+I  G IF+A+ GN  DGH F   A+ +GA A++V    S++         
Sbjct: 30  IDGITTDSRYINPGEIFLALRGNNFDGHDFANIAVDKGAIALIVDHHISVKS-----TKQ 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V +T       A     +    ++A+TG+ GK++    +  +    G+       
Sbjct: 85  IPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVH----- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
             T  ++  +N +  P      K L  L+ Q   +  +E    GL++  L  +  IA   
Sbjct: 140 -KTKENY--NNEIGVP------KTLLELTRQH-DYAVIEMGMRGLNEIAL--LSQIARPT 187

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  HI    +++A   AK  L  E +P ++ AI   D++   +  K+      
Sbjct: 188 IGLITNVGTAHIGRLGSKEAIAQAKCELLAE-MPPDATAIFNHDNSLLVQTAKKVWKG-- 244

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +S G +G  I       + + Q  T+ VEG   DF  PLPG     N L A  +   +
Sbjct: 245 ETISYGLEGGDI----TGELLDNQ--TLRVEG--MDFPLPLPGRHNALNYLGAIAVAKCL 296

Query: 326 GIDSALVLE 334
            +D  ++++
Sbjct: 297 KLDCNVLMQ 305


>gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
 gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
          Length = 454

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 139/344 (40%), Gaps = 35/344 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+N V++D+R I+ G +F A+ G + D H F+  A   GA A +V       D       
Sbjct: 21  KVNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNGGAIAALVEHEQDCFD------- 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ++ V ++RK L   A     +     LAVTG +GK++V      +           G
Sbjct: 74  --NVVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVKEMAATMLGE--------G 123

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +T  +F  D  +    P+ L + L       V  +   A         L   +++   
Sbjct: 124 TLATNGNFNNDVGV----PLTLLR-LRAEHRYAVIELGANAPGEIAWTSSLTRPQVVL-- 176

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   H++   + Q   +AK  +F     +   AI+  DD+++    ++A  AG  V+
Sbjct: 177 VTNVTGAHLEGFGSMQGIADAKAEIFTGCT-QGGQAIVNNDDSFADFFAEKARAAGLTVV 235

Query: 269 SVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            V        G  ++ + +    +  +  +   G     L PLPG  QV NAL+A     
Sbjct: 236 RVSMDESTRAGADLYAENIVLHRDSAEFVLQPLGDAV--LVPLPGAHQVSNALMACAAVR 293

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           A+G     VL  L  L  VPGR       S G    VD  + +N
Sbjct: 294 ALGASLPQVLPRLAALKPVPGRMHI---QSAGTGTVVDDTYNAN 334


>gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 462

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 49/374 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS      +FS   +  +
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEVKVGKS 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + ++ V+NT K L   A     K    ++A+TG++GK+S    V  +        +++  
Sbjct: 83  SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I  
Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +++    AK+ +  +   K+S  II  DD    +++    +   +V
Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316
             +G   KF          N   + +  E   FD           F   +PG+  V N+L
Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A      + I+   +   ++ L     R + V    +G  I  D Y  + +S++  +  
Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352

Query: 376 IRTITSGRIIVVFG 389
           ++ I   R I + G
Sbjct: 353 MKNIKGKRTITLLG 366


>gi|332968967|gb|EGK08011.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella kingae
           ATCC 23330]
          Length = 443

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 41/270 (15%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +++ A  L G+ P+ I+A+TG++GK++  S V  +CQ+SGL +   G   T    A   R
Sbjct: 96  VAILADLLRGQ-PDKIIAITGSNGKTTTTSLVGHLCQQSGLDTVIAGNIGTPVLEAWLER 154

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
              P+ +++                +E SS  L+    D +   A +  N+  DH+D + 
Sbjct: 155 RGKPADVWV----------------LELSSFQLET--TDCLNATAATCLNISEDHLDRYD 196

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFI 277
               Y +AK R+F      ++  ++ ADD + +  MKR H       +V Y    Q +  
Sbjct: 197 DLLDYAHAKDRIFH----GDTVQVLNADDVFCR-AMKRDHR------TVHYFSLTQSQDY 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           HL    A    +Q  +  +        PL G     N L A  LC +IG++   +L H++
Sbjct: 246 HLDAATAQLKHRQDNLLPQNA-----IPLQGSHNAANVLAALALCESIGMERETLLCHVQ 300

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               +P R E VG   + G +++D +  +N
Sbjct: 301 TFKGLPHRVEKVG--EKNGVVFIDDSKGTN 328


>gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Arthrospira platensis NIES-39]
          Length = 468

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 40/298 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R++Q G +FVA+ G++ DGH F+  AIA+GA   VVS  +++           P+
Sbjct: 33  ITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAKGALCAVVSREFAVS------HPEFPL 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T +     A     + P  ++ VTG+ GK++    +  +    G      G    
Sbjct: 87  IPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGKTTTKELISAVLSHHGKVHKTFG---- 142

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                 +N +  P      K L  L S     V  +++       D  R+   +   G  
Sbjct: 143 ----NYNNEIGVP------KTLLELRSDHDFAVIEMAMRGPGEIADLTRI--TRPTVGVI 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRV 267
            N+G  HI    ++ A   AK  L  E +P  S A++  D+   + +M  A    AG  +
Sbjct: 191 VNVGTAHIGRLGSEDAIARAKCELLAE-MPDTSIAVLNHDN---RRLMSTATQVWAGTTI 246

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            + G +G  +  + +         TI VEG   D   PLPG     N L A  +  AI
Sbjct: 247 -TYGLEGGILQGELLG------HETIRVEG--IDLPLPLPGSHNASNFLAALAVLRAI 295


>gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 458

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 160/368 (43%), Gaps = 28/368 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I++V +D+R +  G +F+A+ G K D H F   A+A+GA A++VS    +       
Sbjct: 21  DTQISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADAVAKGAGALLVSKRLPI------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P +VV +T   L L  + +  + P  I+A+TG+SGK+SV     +I ++ G   + 
Sbjct: 74  --DAPQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKTSVKEMSAEILRQCGNVLYT 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G      +F  D  +    P+ L   L          V + A+  G   + ++ +K  +
Sbjct: 132 AG------NFNNDIGV----PLTL---LRLEPEHEFAVVELGANHVGEIAYTVNLVKPES 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGC 265
               NL   H++   +      AK  +F+  L     AII AD + +     K  H    
Sbjct: 179 ALVNNLAAAHLEGFGSLAGVAKAKGEIFDG-LTSNGTAIINADSNDWPHWQEKITHQRVW 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R      +        V   H   +  +         + PLPG   V NAL A  L +++
Sbjct: 238 RFSPQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALAATALTMSV 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383
           G     V + L +L  VPGR   +  N++  ++ +D  + +N  S+    + + ++   R
Sbjct: 298 GATLENVRQGLSELKAVPGRLFPIRLNAQ--QLILDDTYNANVGSMTAAAQVLGSMPGYR 355

Query: 384 IIVVFGCG 391
           ++VV   G
Sbjct: 356 VMVVGDMG 363


>gi|168210142|ref|ZP_02635767.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170711753|gb|EDT23935.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 874

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 174/405 (42%), Gaps = 35/405 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +     L  F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH  
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ID     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 I--HLKKVCAI--HNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324
           +  +LK+   I  +  + + +   GK++      +  F + G+ +  + NA+ A    + 
Sbjct: 637 LQENLKQGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +D  ++ + L++         GRF     N  G  + +DY H  +  ++++ +++ + 
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              I  + G  GDRD      +G+I+ D  D I I  D + R +D  ++ + I  G+   
Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             K   +       EA+R  +++  K + +++  + +E+++ + N
Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859


>gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
          Length = 464

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 148/341 (43%), Gaps = 23/341 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R +  G ++VA+ G + DGH F   A A+GA A++V     ++         
Sbjct: 24  IDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQARGASALLVERLLPIE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V ++   L+  A+ +       + A+TG++GK+SV S +  I Q+    + ++  
Sbjct: 75  LPQVLVADSELALAKIATGMQRDRGTEVFAITGSNGKTSVKSLLLSILQQVAQHAHKV-- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               +   ++N +  P  +  A               + A   G   +  D  +      
Sbjct: 133 -VYANPGNRNNEIGLPLAVIDAP-----EDADYAVYEMGAGKPGDIAYLTDIARPRYALV 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRV 267
            N+   H++   +       K  ++  L P +  A+I  DDAY +   +      A CRV
Sbjct: 187 NNIAPAHLERMGSLLGVAVTKGAIYAAL-PADGVAVINVDDAYGRWFEQHFVGTPARCRV 245

Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L  G +    I  + + A     Q T+     +   +  LPG   V NAL AA L +A G
Sbjct: 246 LRYGLEHTADITARDIRAGAQGNQFTLVSPAGEARVVLGLPGRHNVSNALAAASLALAAG 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           +D AL+   L +   VPGR   +    R G + VD ++ +N
Sbjct: 306 VDLALIAAGLAEAQPVPGR--QIAHQLRNGAVLVDDSYNAN 344


>gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
 gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
          Length = 457

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 137/309 (44%), Gaps = 37/309 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +++DSR+I  G IF+A+ GN  DGH F   A+ +GA A++V    S++         
Sbjct: 30  IDGITTDSRYINPGEIFLALRGNTFDGHDFANIAVDKGAIALIVDHHISVKS-----TKQ 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V +T       A     +    ++A+TG+ GK++    +  +    G+       
Sbjct: 85  IPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVH----- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
             T  ++  +N +  P      K L  L+ Q   +  +E    GL++  L  +  IA   
Sbjct: 140 -KTKENY--NNEIGVP------KTLLELTRQH-DYAVIEMGMRGLNEIAL--LSQIARPT 187

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  HI    +++A   AK  L  E +P ++ AI   D++   +  K+      
Sbjct: 188 IGLITNVGTAHIGRLGSKEAIAQAKCELLAE-MPPDATAIFNHDNSLLVQTAKKVWKG-- 244

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +S G +G  I       + + Q  T+ VEG   DF  PLPG     N L A  +   +
Sbjct: 245 ETISYGLEGGDI----TGELLDNQ--TLRVEG--MDFPLPLPGRHNALNYLGAIAVAKCL 296

Query: 326 GIDSALVLE 334
            +D  ++++
Sbjct: 297 KLDCNVLMQ 305


>gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 35/364 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSATIRSN 89
           +S+DSR ++   +F+ + G K DG  F+  AI +GA A++ +   +   L+DFS      
Sbjct: 29  ISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAIAVITARLENVECLKDFS------ 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V+ T + L   AS    K     +AVTG+SGK++    + QI  +     +++  
Sbjct: 83  VDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KYKVLK 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
           T    +F  +N +  P  I+     +   +  +  V +  S  G +  RL  I +     
Sbjct: 139 TE--GNF--NNEIGLPLTIF-----NLEDTHQIAVVEMGMSGFG-EIRRLKNIAEPQVAV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN+G  HI+   +++    AK  L E    +E+  ++ ADD     + K       +  
Sbjct: 189 FTNIGVAHIEKLGSRENILKAKTELIEN-FKEENVIVLNADDDM---LSKIPLQYSSKYY 244

Query: 269 SVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             G +   I   K C I   +   + T+  +  + +    +PG   VYN+L A  + +  
Sbjct: 245 RYGIKSGEI---KACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAICVGLEF 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI+   + E L+       R   +          V Y    +S++  L  +R + + R I
Sbjct: 302 GINVEDMAEALKDFQPGKRRLNIIEIGDIKIIDDV-YNANPDSMKAALSVLRDLPAKRKI 360

Query: 386 VVFG 389
            V G
Sbjct: 361 AVLG 364


>gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coprococcus catus GD/7]
          Length = 456

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 153/373 (41%), Gaps = 63/373 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G+IFVA  G + DGH FIP   A+GA A V+      +D         P ++V
Sbjct: 35  DSRQIEPGYIFVATKGERVDGHRFIPDVFAKGALA-VICEVLPEEDLG-------PCILV 86

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +++  F++L  +  + +   NI  + +TG+ GK+S   F+  +     +  +++  T+  
Sbjct: 87  EDS--FMALKQAAAFYRQQLNIRVVGITGSVGKTSTKEFIAAVL----VEKYKVHKTAG- 139

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNL 212
                +N +  P  I+            +  + +  ++ G + HRL  + +      TN+
Sbjct: 140 ---NYNNEVGLPLTIF-----GIQDDDQIAVLEMGINTFG-EMHRLSEVARPDICVMTNI 190

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD--------DAYSKEVMKRAHNAG 264
           G+ H++    +     AK  +F+ + P E   I+  D        D Y K  +    N  
Sbjct: 191 GQCHLENLIDRDGILRAKSEIFDFMNP-EGTVIVNGDDDKLATIHDVYGKAPITFGMNKD 249

Query: 265 CRVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             + +   + +        IH+  V    N                 PLPGE  +YNA+ 
Sbjct: 250 NAIWADHIENRGLLGSRADIHMGDVLVHAN----------------IPLPGEHMIYNAMA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376
           AA + +   +    +   +  +  V GR   +     G ++ +D  + +N + M    ++
Sbjct: 294 AAAVGVQFDMTKEEITAGISHVEAVAGRSHLI---EAGDKVVIDDCYNANPVSMKAAIDL 350

Query: 377 RTITSGRIIVVFG 389
                GR + + G
Sbjct: 351 LATAPGRKVAILG 363


>gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
 gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
          Length = 462

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 49/374 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS      +FS   +  +
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEVKVGKS 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + ++ V+NT K L   A     K    ++A+TG++GK+S    V  +        +++  
Sbjct: 83  SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I  
Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +++    AK+ +  +   K+S  II  DD    +++    +   +V
Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316
             +G   KF          N   + +  E   FD           F   +PG+  V N+L
Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A      + I+   +   ++ L     R + V    +G  I  D Y  + +S++  +  
Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352

Query: 376 IRTITSGRIIVVFG 389
           ++ I   R I + G
Sbjct: 353 MKNIKGKRTIALLG 366


>gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
 gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
          Length = 468

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 143/346 (41%), Gaps = 30/346 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  + +DSRH +AG  F+A+ G + D H F+ Q + QG +  +V     +  F    
Sbjct: 34  EGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVVQQGCQVAIVEQPLDVDIFQ--- 90

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 L+V +TR  L    +    ++P+  ++A+TG+SGK++    +  I  R      
Sbjct: 91  ------LIVSDTRLALGALGAYRRQQYPKLQVIALTGSSGKTTTKEMLGSILSR------ 138

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            + PT  ++    +N L  P  +     L          + + AS  G   +    ++  
Sbjct: 139 -LAPT-LVTRGNLNNDLGVPMML-----LELRPEHQYAVMELGASHQGEIDYTSKLVQPH 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     +     AK  +++  +  +  AI+ ADD ++ ++ +       
Sbjct: 192 VAGILNIGTAHLGEFGGRDGICRAKSEIYQH-IAVDGTAILPADDDFTDQIKQAIQTQ-- 248

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           ++LS G  G+ I+   V       +  +           P  GE  V NAL A    +AI
Sbjct: 249 KMLSFGQDGE-IYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEHNVQNALAATAFALAI 307

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           GID   +++ L       GR  F+     G  +++D  + +N   M
Sbjct: 308 GIDLNNIVQGLSAAQGAKGRLNFI---QHGHHLFIDDTYNANPGSM 350


>gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris]
          Length = 494

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R + +G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV NT   L+  A+ +       ++A+
Sbjct: 55  ADAVARGASGLLVDRLLPAL--------HVPQVVVANTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G      G T+  +   ++N +  P  +  A   + L+  
Sbjct: 107 TGSNGKTSVKALLLAILAEAGRVD---GITAYANPGNRNNEIGLPLAVIAAPDDADLAVY 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +        ++  D  R D + L+     N+   H++   +       K  ++   LP 
Sbjct: 164 EMGAGKPGDIAYLTDIARPD-VALV----NNIAPAHLERMGSLLGVAQTKGAIYTA-LPA 217

Query: 241 ESPAIIYADDAYS----KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV 295
           +  A+I ADDA+     ++++ +    G RVL  G         +   +H    Q  + +
Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQ-GRRVLRYGLHASAEITARQLRLHAAGAQFVLVI 276

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              +   + PLPG   V NAL A GL +  GI   ++   L +   V GR
Sbjct: 277 PQGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR 326


>gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 494

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R + +G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV NT   L+  A+ +       ++A+
Sbjct: 55  ADAVARGASGLLVDRLLPAL--------HVPQVVVANTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G      G T+  +   ++N +  P  +  A   + L+  
Sbjct: 107 TGSNGKTSVKALLLAILAEAGRVD---GITAYANPGNRNNEIGLPLAVIAAPDDADLAVY 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +        ++  D  R D + L+     N+   H++   +       K  ++   LP 
Sbjct: 164 EMGAGKPGDIAYLTDIARPD-VALV----NNIAPAHLERMGSLLGVAQTKGAIYTA-LPA 217

Query: 241 ESPAIIYADDAYS----KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV 295
           +  A+I ADDA+     ++++ +    G RVL  G         +   +H    Q  ++ 
Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQ-GRRVLRYGLHASAEITARQLRLHAAGAQFVLAT 276

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              +   + PLPG   V NAL A GL +  GI   ++   L +   V GR
Sbjct: 277 PQGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR 326


>gi|330883892|gb|EGH18041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 106

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           TP PI +   L+ L   G   V++E SSHGLDQ R   +       TNL RDH+DYH T 
Sbjct: 1   TPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALAFDVAVLTNLSRDHLDYHGTM 60

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +AY  AK +LF          +I  DDA+ +E+
Sbjct: 61  EAYAAAKAKLFA--WSNLKCRVINLDDAFGREL 91


>gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
 gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
          Length = 454

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 162/375 (43%), Gaps = 38/375 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA---YSLQDFSATIRSN 89
           +S+DSRH+Q G +F+A+ G   D H F+ +   +   A++V      Y L          
Sbjct: 26  ISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKVAAVLVERVPENYPL---------- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR  +   A     +    ++ VTG++GK++V   +  I + +       G 
Sbjct: 76  -PAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEMIASIFRTA------WGE 128

Query: 150 TSTISSFAQDNRLTTPSPIYLAKAL--SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +S   +N +  P  ++    +  + +   G+ H+   A    + Q  +       G
Sbjct: 129 NCLATSGNFNNDVGVPLTVFRLNEMHRAAVIELGMNHIGEMAYLASIAQPTV-------G 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++ Q+ +A       +   +LP+   A+  ADDAYS   +   +  G + 
Sbjct: 182 LVNNAQREHQEFMQSVEAVARENGTVI-RMLPENGIAVFPADDAYSS--LWAGYAGGRQT 238

Query: 268 LSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++ G+  K   +     I   K ++ +S+ G+  +      G   V NA+ AA  C+A G
Sbjct: 239 MTFGFS-KDADVSAAYRIEKGKTRLVMSLAGEQVEMSLSTSGRHNVRNAMAAAACCLAAG 297

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
           I    + E LEK   V GR E     +  G + +D  + +N  S+   +  +  + S  I
Sbjct: 298 IGKLEIAEGLEKFVPVRGRLER--KTAFNGALLIDDTYNANPDSVRAAIDVLADMPSDGI 355

Query: 385 IVVFGCGGDRDQGKR 399
            V+   G   ++G+R
Sbjct: 356 FVLGDMGEVGEEGER 370


>gi|94309648|ref|YP_582858.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
 gi|93353500|gb|ABF07589.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
          Length = 856

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 166/393 (42%), Gaps = 46/393 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA    G+ P  ++AV+GT+GK++    +  I   +GL   ++G T T   + Q  R+
Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHILASNGL---RMGMTGTDGVYIQGERI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219
            T        A + L    V     E +  GL +  L   +      TN+G  DH+   Y
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSY 574

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYAD-------DAYSKEVMKRAHNAGCRVLSV-- 270
             T +     K  + + + P     +  AD       DA    V   AH+AG   +++  
Sbjct: 575 ISTVEDLAVLKSVIVQNVAPHGMAVLNAADEMVARMADACPGTVTFFAHDAGLPTMALHR 634

Query: 271 --GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIG 326
             G +  F+   ++ A     +V I +     D      G   FQV NA+ +     A+G
Sbjct: 635 AQGRRVVFVEGDQIVATEGDTEVRIPLA----DIPLTRNGSIGFQVENAMSSIAAAWALG 690

Query: 327 IDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           ID A++   L          PGRF     + +G  +  DY H  ++++ +   + T+ S 
Sbjct: 691 IDWAVIRRALATFVNDAATAPGRFNVF--DFKGATLIADYGHNPDAIQALCNAVETMPSK 748

Query: 383 -RIIVVFGCGGDRDQGKRP---IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R++V+ G G  RD+  R    I+G +     ++ +  D   R  +  ++ A +  G+ G
Sbjct: 749 RRVVVISGAGDRRDEDIRKQTQILGGV---FDEVVLYQDQCQRGREDGEVLALLREGLQG 805

Query: 439 FIEKGNRIEAIR-------TAIEMLNKQDVLVV 464
             ++ + +E IR       TA+  L   D+ ++
Sbjct: 806 -AQRTSHVEEIRGEFVAIDTALSHLQPGDLCLI 837


>gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP
           32953]
 gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 458

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 42/353 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I EV+ D+R + AG +FVA+ G + DGH F   AIA GA A++VS           +  
Sbjct: 28  EITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSK---------RLLV 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L  FA+ +  + P  I+A+TG+SGK+SV      I ++ G   +  G
Sbjct: 79  GGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYTAG 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 +F  D  +    P+ L   L   +      + + A+  G   +  D  +  +  
Sbjct: 139 ------NFNNDIGV----PLTL---LRLTAEHDFAVIELGANHVGEIAYTTDLSRPESAL 185

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKR 259
             NL   H++   +      AK  +F   LP    AII AD           ++K V + 
Sbjct: 186 VNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHNKRVWRF 244

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + +A   +       +         +H+    T+++E        PLPG+  + NAL AA
Sbjct: 245 SPHAAEHIDFYASDVRITPQLTSFTLHSPFG-TVAIE-------LPLPGQHNIANALAAA 296

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            L +++G D A V + L +L  VPGR   V      G++ +D ++ +N   MI
Sbjct: 297 ALAMSVGADLAAVRQGLAQLQAVPGRLFPVPLAE--GKLLLDDSYNANVGSMI 347


>gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
 gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
          Length = 473

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 38/230 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSATIRSNTP 91
           DSR +Q G IFVA+ G + DGH +I    A+GA   VVS A+      +D +A  RS   
Sbjct: 36  DSREVQEGGIFVALEGERTDGHRYIDDVFAKGASLAVVSEAWYASHGQKDGAAGRRS--- 92

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+VD+T + L   A          + AV G++GK++    +  +          +G   
Sbjct: 93  YLIVDDTVRGLQQMAVAYRRSFSIPVFAVGGSNGKTTTKELIASV--------LGVGFKV 144

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTH-------VSVEASSHGLDQHRLDGI 202
            +S   ++N L  P  +   K  + ++    G+ H        S+   +HGL        
Sbjct: 145 HMSRGNRNNHLGVPLTLLQMKRDTEIAVVEMGINHPGEMELLASIAMPTHGL-------- 196

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                  TN+G +H+++    Q    A+ RL+E L        + ADD +
Sbjct: 197 ------LTNIGHEHLEFLHDLQGVAAAETRLYEYLDGHGGVCFVNADDPW 240


>gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
 gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
          Length = 459

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 158/382 (41%), Gaps = 30/382 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +P QW E  +  V  DSR +  G +FV I G + DGH FI QAI  GA A + +     +
Sbjct: 17  YPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQAIQAGAVATLWA-----K 70

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D   T  ++ P + V++    L   A     K    ++A+TG++GK++       +    
Sbjct: 71  DHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLA-- 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             + F +    T ++F  +N +  P  I     L   ++  V  V +     G      +
Sbjct: 129 --TEFNV--VKTEANF--NNEIGVPITI-----LGMNANTEVLVVELGMDRPGQLHFLSE 177

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++      T +G  HI++ +T+    +AKM + + L  KE    IY  D        +A
Sbjct: 178 LVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGL--KEDGCFIYDGDEPLLAERAKA 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   R+  +  +   +    V     +     +++  + +   P+ GE+ V NAL A  
Sbjct: 236 VDVEQRMFGMKNEND-VFASDVAGTDTETSFKTNLD-PEVEVKLPIIGEYNVKNALAAIT 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI-RT 378
           +     +  A     L   ++   R E++    +G RI  D Y     + + +L +   T
Sbjct: 294 VGDRYHVGVADSARALADFNLTKNRTEWL-KGRQGERILSDVYNSNPTAAKAVLNSFAHT 352

Query: 379 ITSGRIIVVFG----CGGDRDQ 396
             +GR  VV G     G + DQ
Sbjct: 353 KKTGRRFVVLGDMLELGENADQ 374


>gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. 18P13]
          Length = 454

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 125/297 (42%), Gaps = 29/297 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E+S+D+R I  G +F+A+ G + DGH F  QA  QGA A++          S  +  +
Sbjct: 25  VTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGAVAVI----------SDHVIPD 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VVD+T K L  FA+    K     + VTG+ GK++  + +  +     LS+     
Sbjct: 75  CPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTTKNMIALV-----LSTH---- 125

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-GS 208
             T+ +    N     + I L K L  L S     V     S   +  RL      + G 
Sbjct: 126 CKTLKTAGNLN-----NEIGLPKTLMGLDSTYKAAVVEMGMSDFGEISRLSKAAAPSIGV 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI   ++Q+    AK+ + +  +  ++P ++  DD Y    +K   +      
Sbjct: 181 ITNIGFSHIAQLKSQEGICRAKLEILDG-MAADAPLVVNGDDPYLIP-LKTTLSRPVYTY 238

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +   G     +++ + +      +  +G       P  GE  V N   AA  CI +
Sbjct: 239 GIKNAGADCRAERIVSENGCTSFDLCWQGTVTPVTLPCIGEHNVMNG--AAAFCIGM 293


>gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
 gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
          Length = 464

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 149/349 (42%), Gaps = 39/349 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R +  G ++VA+ G + DGH F   A A+GA A++V     ++         
Sbjct: 24  IDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQARGASALLVERLLPIE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V ++   L+  A+ +       + A+TG++GK+SV S +  I Q+    + ++  
Sbjct: 75  LPQVLVADSELALAKIATGMQRDRETEVFAITGSNGKTSVKSLLLSILQQVAQHAHKV-- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               +   ++N +  P  +  A               + A   G   +  D  +      
Sbjct: 133 -VYANPGNRNNEIGLPLAVIDAP-----EDADYAVYEMGAGKPGDIAYLTDIARPRYALV 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRV 267
            N+   H++   +       K  ++  L P +  A+I  DDAY +   +      A CRV
Sbjct: 187 NNIAPAHLERMGSLLGVAVTKGAIYAAL-PADGVAVINVDDAYGRWFEQHFVGTPARCRV 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L  G +    H   + A    + +    +G  F  + P         LPG   V NAL A
Sbjct: 246 LRYGLE----HTADITA----RDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAA 297

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           A L +A G+D AL+   L +   VPGR   +    R G + VD ++ +N
Sbjct: 298 ASLALAAGVDLALIAAGLAEAQPVPGR--QIAHQLRNGAVLVDDSYNAN 344


>gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
          Length = 462

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 173/395 (43%), Gaps = 42/395 (10%)

Query: 11  FPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E++N +     +Q    K N++S+D+R I    IF+A+ G   +G+ +I  A   GA 
Sbjct: 6   FDEIVNAVQGKVVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVASDNGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             ++      +D    I   T I+ V++T+K L   A     K    ++ +TG++GK+S 
Sbjct: 66  MCIIDEIKYRED---EIEKGTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGSNGKTST 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +      + LSS +     T  +F  +N +  P  I+                 +E 
Sbjct: 123 KDLLA-----AALSS-KYKVFKTQGNF--NNEIGLPLMIFKL-------DNSYDIAVLEM 167

Query: 190 SSHGLDQ-HRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             + L++ HR+ +  K      TN+G  HI    +++    AK+ +  +   K S  I+ 
Sbjct: 168 GMNNLNEIHRMAEAAKPDIALITNVGVSHIGNLGSRENILKAKLEI-TDFFDKNSILIVN 226

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQ-VTISVE--GKDFDFL 303
            D+    +++    +    + + G + G  ++    C I  K+  V  SVE  GK F+  
Sbjct: 227 GDN----DLLSGVKSNKFSIYTTGMENGNNLN---ACDIELKENFVEFSVEENGKKFEET 279

Query: 304 F--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV- 360
           F   +PG+  + N+L+A      +G+++  + E L+ L     R + +    +G +  + 
Sbjct: 280 FHVEIPGKHTISNSLLAIACGRILGMENKDIKEGLKNLQTTAMRMDLI----KGKKFNIL 335

Query: 361 --DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
              Y    +S++  +  ++ + S R I V G  G+
Sbjct: 336 NDCYNANPDSMKAAIDVLKNVESSRRIAVLGTMGE 370


>gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 437

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 23/321 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R + +G ++VA+ G + DGH F   A+A+GA  ++V               +
Sbjct: 17  IDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVDRLLPAL--------H 68

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV NT   L+  A+ +       ++A+TG++GK+SV + +  I   +G      G 
Sbjct: 69  VPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAILAEAGRVD---GI 125

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T+  +   ++N +  P  +  A   + L+   +        ++  D  R D + L+    
Sbjct: 126 TAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARPD-VALV---- 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS----KEVMKRAHNAGC 265
            N+   H++   +       K  ++   LP +  A+I ADDA+     ++++ +    G 
Sbjct: 181 NNIAPAHLERMGSLLGVAQTKGAIYTA-LPADGVAVINADDAFGAWFEQQLLAQPLQ-GR 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           RVL  G         +   +H    Q  ++    +   + PLPG   V NAL A GL + 
Sbjct: 239 RVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRHNVLNALAATGLALG 298

Query: 325 IGIDSALVLEHLEKLHVVPGR 345
            GI   ++   L +   V GR
Sbjct: 299 AGIALPIIAAGLAQATQVAGR 319


>gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
 gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
          Length = 560

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 164/428 (38%), Gaps = 91/428 (21%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +    I  V +D+R ++  ++F+  VG K D H FIPQA  QGA     + + S +D + 
Sbjct: 42  YERLTIAGVVTDNRQVERDFLFIPFVGEKVDAHRFIPQAFEQGA-----ACSLSEEDLTD 96

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +    P + V+++++ L   A+    +    ++ + G+ GK+S    V  +  R     
Sbjct: 97  PV---GPCIRVESSQRALMDIAAYYRRQLKLPLVGIIGSVGKTSTKEMVASVLSR----- 148

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIK 203
                  T  +F  +N +  P  +   +           H  V     G+D   ++  + 
Sbjct: 149 -HYSVLKTEGNF--NNEIGMPMTVLKIR----------DHHQVAVVEMGIDNFGQMSALA 195

Query: 204 LIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            +A       TN+G  H+++ +T+     +K  +F+ L    S  I+  DD +    ++R
Sbjct: 196 AVARPNIVVITNIGEAHLEFMKTRDGILASKTEVFDYLADGAS-VILNGDDDHLN-CIRR 253

Query: 260 AHNA---------------------------------------------GCRVLSVGYQG 274
           A  A                                             GC  +S  Y  
Sbjct: 254 AGGARIIFYGLGVDSSAAAREKDKDKLARLNGQIAEHLAKAKDRDGLADGCFDMSAAYTD 313

Query: 275 KFIHLKKVCAIHNKQQVT--------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +    ++     N   +         I+ EG DF+ + P+PGE  VYNAL AA +  ++G
Sbjct: 314 QERLARETYRAENLSALGMEGMSASFITPEG-DFEAVIPIPGEHNVYNALAAAAVGQSLG 372

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRII 385
           +D   +   +E    + GR  F+     GG   +D  + +N   M     +     GR I
Sbjct: 373 LDLDEIKAGMETASTISGRAHFL---HLGGLTLIDDCYNANPSSMRASLAVLARAKGRRI 429

Query: 386 VVFGCGGD 393
            V G  G+
Sbjct: 430 AVLGDMGE 437


>gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
 gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
          Length = 452

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 128/303 (42%), Gaps = 28/303 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  ++ VS+D+R +  G +FVA+ G + DGH +I  A+  GA   V   A+  +D+ A  
Sbjct: 17  EGAVDCVSTDTRALPPGCLFVALEGERFDGHDYITAALRGGAACAV---AHERRDYGA-- 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ V NT++ L   A     +   + + +TG+ GK++    +         + FQ
Sbjct: 72  ---GPVMYVKNTQRALMDLARAYRARFDIHCVGITGSVGKTTTKDMIAAAVS----AGFQ 124

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKL 204
                T+ +    N     + I L K L  L ++G     VE    G  +     D  + 
Sbjct: 125 -----TLKTEGNLN-----NEIGLPKTLLGL-TRGHEAAVVEMGMQGFGEIAALADVARP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI+   +++    AK+ L  + LP  +P  +  DD   K+V     +  
Sbjct: 174 TLGVITNIGVSHIEQLGSRENIMKAKLEL-ADALPDGAPLFLCGDDDLLKKVSIPRLDV- 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R   V      +H   +     +   T+   G       P  G   V NA+ A G+ +A
Sbjct: 232 -RFYGVENPACALHAADIREADAQTAFTLQYPGGQVGATIPCIGLHNVRNAVAACGVGMA 290

Query: 325 IGI 327
           +GI
Sbjct: 291 LGI 293


>gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 459

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 32/263 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL  +D  E  N + I     RE K++ +S+D+R+I    +F+A+ G K DGH F+
Sbjct: 1   MKL-DLTVEDILEATNGVLI-KGDIRE-KVDSISTDTRNINEDEVFIALKGEKFDGHDFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +G + I++S   +++        N  ++ V +T K L   A+    K    ++ V
Sbjct: 58  KDAILKGVKGIIISREIAVE-------GNIFVIRVQDTLKALQDIANYYRRKLKTKVIGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++  + + ++    G         + +S    +N +  P  I  A+       +
Sbjct: 111 TGSSGKTTTKNLIGKLLSIVG--------KTYVSRENFNNEIGVPLSILDAE-------E 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            V  + +E +     +  L  +  IA    G  TN+G  HI    +++A   AK  +FE 
Sbjct: 156 DVDFLVLEMAMRNKGEISL--LSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEH 213

Query: 237 LLPKESPAIIYADDAYSKEVMKR 259
            + ++  AI+  DD +S  + ++
Sbjct: 214 -IKQDGVAILNNDDPFSMRIYEK 235


>gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
 gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
          Length = 465

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 40/232 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +FVAI G++ DGH F  QA+  GA A++ S              + P +VV
Sbjct: 34  DSRAVEPGSLFVAIRGDRVDGHDFAAQAVEAGAVAVLASRPV-----------DAPAVVV 82

Query: 96  DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG-----LSSF--QI 147
            +T   L+  A+ +    P   ++ VTG++GK+S    + ++  R G     + SF  +I
Sbjct: 83  GDTVTALADLATAVCADLPSTTVIGVTGSAGKTSTKDLLARLTARIGPTIAPVESFNNEI 142

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G   T+    +D R       YL   LS   +  ++H++           R+   ++  G
Sbjct: 143 GHPLTVLKAGEDTR-------YLVLELSARDAGHISHLA-----------RIAPPRI--G 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              N+G  H+     + A   AK  L E  LP +  A++ ADD     + +R
Sbjct: 183 VVLNVGTAHLGVFGGKDAIAKAKGELVEA-LPADGVAVLNADDPLVAAMARR 233


>gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
 gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
          Length = 445

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADMWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHKADFWLERETGCLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAIALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
 gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
          Length = 453

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 162/387 (41%), Gaps = 70/387 (18%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +DSR ++   +FVA+ G + DGH +    +++GA A+++S      D  A     
Sbjct: 22  IQSVGTDSRKLEPAQLFVALKGERFDGHDYARAVLSEGATAVLLS-----HDVGA----- 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--------- 140
           TP ++V++TR  L   A+    K    + A+TG++GK+SV   +  I + +         
Sbjct: 72  TPAVLVEDTRLALGQLAAYWRSKFSIPVAAITGSNGKTSVKEMLAAILRVAAGADDAVLA 131

Query: 141 --GLSSFQIGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  +  IG   T+    + +R       +  A  +SYL+  G   V++          
Sbjct: 132 TQGNLNNDIGLPLTLLRLHERHRYAVVEMGMNHAGEISYLTRIGRPDVAL---------- 181

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---- 253
                        N    H+    + +    AK  +FE  L  +  A+I ADD+++    
Sbjct: 182 -----------INNATAAHLGGLGSVEGVAKAKGEIFEG-LADDGVAVINADDSFAGLWQ 229

Query: 254 -----KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLP 307
                + +++   NAG   ++ GY           A+H+    + +S    +     P+P
Sbjct: 230 SLAGRRRIVRFGLNAGD--VTAGY-----------ALHSAGCDLQLSTPAGERALHLPVP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  + +++G+    V E L     V GR +      R G + +D  + +N
Sbjct: 277 GLHNIRNALAATAVALSMGVSLDAVAEGLAGFAGVKGRLQR--KPGRHGALLIDDTYNAN 334

Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGD 393
              M    ++    SG+ ++V G  G+
Sbjct: 335 PASMRAAIDVLASHSGKRLLVVGDMGE 361


>gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
 gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
          Length = 450

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 48/325 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +++DSR I++G  F+A+ G+  +GH FI  AI +GA  ++V      Q  S    SN
Sbjct: 30  VSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIEKGAATLIVD-----QPVSVNSSSN 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+ +V NT +     A     +    ++A+TG+ GK++    +  +    G        
Sbjct: 85  IPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSVGKTTTKELIASVLATQG------KV 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS--VEASSHGLDQHRLDGIKLIA- 206
             T++++  +N +  P      K L  L     TH S  +E    G  +     I L+A 
Sbjct: 139 HKTLANY--NNEIGVP------KTLLELDE---THNSAVIEMGMRGRGE-----IALLAQ 182

Query: 207 ------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+G  HI    ++ A   AK  L  E  P  S A++  D     E  KR 
Sbjct: 183 ITRPTIAVITNVGTAHIGRLGSEAAIAEAKCELLAE-SPSSSIAVLNYDHPLLTETAKRV 241

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  ++ G+ G  I  + +         T+ V G DF+   PL G     N + A  
Sbjct: 242 WQG--ETITYGFSGGDIVGELL------DLTTLRVNGLDFN--LPLSGRHHALNFMAALA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGR 345
           +   +GID   + E + K+++  GR
Sbjct: 292 VAKILGIDWTSLQEGI-KVNLPSGR 315


>gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mesorhizobium loti MAFF303099]
 gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium
           loti MAFF303099]
          Length = 477

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 127/336 (37%), Gaps = 24/336 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  +   P+      I+ +S DSR +Q G  F AI G   DGH F   AI  GA  +VV
Sbjct: 10  LVAAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKAGAGVLVV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +         +  R   PI+VV++    L         +    I+AVTG++GK++    +
Sbjct: 70  AEG----KLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +    G           + + AQ        P+ LA+           +   E   + 
Sbjct: 126 RHVLSAVG----------KVHASAQSFNNHWGVPLTLAR-----MPDNCDYAVFEIGMNH 170

Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            D+ R  +  ++      T +   H+ + +       AK  +FE L P E  A++  DD 
Sbjct: 171 PDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEP-EGAAVLNRDDG 229

Query: 252 YSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
             K + K AH AG   V   G   +       C +H +   +   + G D       PG 
Sbjct: 230 RFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             V N L   G    +G D   V   L  L    GR
Sbjct: 290 HMVQNVLAVLGAAQLVGADLNKVALALADLSAERGR 325


>gi|169344245|ref|ZP_02865227.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495]
 gi|169297704|gb|EDS79804.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495]
          Length = 874

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 174/405 (42%), Gaps = 35/405 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+ L       Y   P  +++VTGT+GK++    +  +     L  F +G T+T      
Sbjct: 464 RRILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH  
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ID     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 I--HLKKVCAI--HNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324
           +  +LK+   I  +  + + +   GK++      +  F + G+ +  + NA+ A    + 
Sbjct: 637 LQENLKQGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +D  ++ + L++         GRF     N  G  + +DY H  +  ++++ +++ + 
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              I  + G  GDRD      +G+I+ D  D I I  D + R +D  ++ + I  G+   
Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             K   +       EA+R  +++  K + +++  + +E+++ + N
Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859


>gi|150388000|ref|YP_001318049.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|189028968|sp|A6TJM2|MURC_ALKMQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149947862|gb|ABR46390.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus metalliredigens
           QYMF]
          Length = 460

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 133/324 (41%), Gaps = 37/324 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPI 168
           K  E  +AV G+ GK++  S +  + + S L      PT  +     +   N     S  
Sbjct: 109 KKYEKAIAVAGSHGKTTTTSLISLLMEYSNLD-----PTILVGGELDEIGGNIKIGQSQH 163

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           ++ +A  Y+ S              L  +   GI L      N+  DH+DY +  + +  
Sbjct: 164 FITEACEYVES-------------FLKFYPFIGIIL------NIDEDHLDYFKDIE-HIK 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIH 286
           +  + F + +PKE   I   DDA+ +E+ +   +  C V++ G + K  F+      +  
Sbjct: 204 SAFKKFAQRIPKEGFLIASYDDAHVREISR---DLDCHVITYGIKTKSQFMAHNIEFSFE 260

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                 +S EGK    F   +PG   VYN+L A      +G+D   + +H+ +   +  R
Sbjct: 261 GLPSFDVSFEGKTIGSFSLNIPGLHNVYNSLAAIATTYVLGVDPVAISKHITRFKGIHRR 320

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGK 404
           F+ +G   +G ++  DYAH    +   L+  +     +I  VF      R Q       K
Sbjct: 321 FDLLG-EVKGAKVIDDYAHHPVEIRATLEAAKKYPHKKIWCVFQPHTYSRTQALLKDFAK 379

Query: 405 IALDLADIAIVTDDNPRSEDPEKI 428
            +  LAD  I+TD     E  E I
Sbjct: 380 -SFYLADHVIITDIYAAREKDEGI 402


>gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Halanaerobium
           praevalens DSM 2228]
          Length = 465

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 164/374 (43%), Gaps = 42/374 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+ E+  DSR ++ G++F+AI+G  +DGH ++ +A+  GA A++V         S  I++
Sbjct: 25  KVKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLKEAVKNGASAVIVDRN------SPAIQA 78

Query: 89  NTP---ILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144
             P   +L V++T K L   A     K  +  ++ +TG++GK++    +  +       S
Sbjct: 79  AYPNLSVLKVEDTTKALQAIAFNYRHKFDDLKVIGITGSAGKTTTKDMIFSVL------S 132

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIK 203
            +     T  ++  +N++  P        L+ L   G    ++ E    GL +  +D + 
Sbjct: 133 EKYYCLKTEGNY--NNQIGLP--------LTLLRLDGREDFAILEMGMSGLAE--IDLLA 180

Query: 204 LIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            IA    G  TN+   H++   + +    AK  L + L   ++ AI+  D+ Y+K++   
Sbjct: 181 KIAVPEIGIITNIAAAHLEQLGSLENIAQAKKELIDNLTAADT-AILNYDNQYTKKI--- 236

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQVYNA 315
             N+  + +  G++ K    +      N +  T+  E     K++ F+F   G+  +YN 
Sbjct: 237 GTNSKAQTIYFGFE-KGADARIENYFFNSKTETLKFEFTYQAKNYKFIFNKAGKHNLYNI 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +     +    + + L K      R EF+   ++   I   Y     S++  L  
Sbjct: 296 LPALIIAFKYKLKPEEIQKGLLKTKFSSLRMEFIQLKNKARIINDCYNANPLSVKAALDV 355

Query: 376 IRTITSGRIIVVFG 389
           +  I + R I +  
Sbjct: 356 LEQIKAKRKIAILA 369


>gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
 gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
          Length = 462

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 148/344 (43%), Gaps = 31/344 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K + VS DSR ++   +F AI G + DGH F+  A   GA A VV+    +         
Sbjct: 28  KFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQAASDAGAAAAVVTHFVPV--------- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V +TR+ L   A +   K    ++AV G++GK++    V  I +        +G
Sbjct: 78  SLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNGKTTTTQMVLSIIKERFQEGAWVG 137

Query: 149 PTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +++       L    P + A         G+ H+       G  +  +  I    G
Sbjct: 138 TEGNLNNELGVSLMLWKLRPEHQAACFEV----GMNHI-------GEMRPLVSAIAPTIG 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + TN  RDH ++  + +        +F +L P++  A+I A D ++ E  K A N   RV
Sbjct: 187 TVTNTMRDHQEFLASLEETAKENGEVFAQL-PRQGVAVINAADPFAVEWRKMAGNN--RV 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G     ++    C +       ++  G+  D    +PG+  + NA+ AA +  A+G 
Sbjct: 244 VTFGTPDSDVY---ACEVEGTAFRLVTPIGQ-IDIELKVPGKHNIVNAVNAAAVLFAMGR 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           D   + + LE    V  R E V  +   G + +D ++ +N   M
Sbjct: 300 DLCDIKKGLENFEAVSHRGEVVTLDD--GSVVIDDSYNANPDSM 341


>gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 462

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 148/344 (43%), Gaps = 31/344 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K + VS DSR ++   +F AI G + DGH F+  A   GA A VV+    +         
Sbjct: 28  KFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQAASDAGAAAAVVTHFVPV--------- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V +TR+ L   A +   K    ++AV G++GK++    V  I +        +G
Sbjct: 78  SLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNGKTTTTQMVLSIIKERFQKGAWVG 137

Query: 149 PTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +++       L    P + A         G+ H+       G  +  +  I    G
Sbjct: 138 TEGNLNNELGVSLMLWKLRPEHQAACFEV----GMNHI-------GEMRPLVSAIAPTIG 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + TN  RDH ++  + +        +F +L P++  A+I A D ++ E  K A N   RV
Sbjct: 187 TVTNTMRDHQEFLASLEETAKENGEVFAQL-PRQGVAVINAADPFAVEWRKMAGNN--RV 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G     ++    C +       ++  G+  D    +PG+  + NA+ AA +  A+G 
Sbjct: 244 VTFGTPDSDVY---ACEVEGTAFRLVTPIGQ-IDIELKVPGKHNIVNAVNAAAVLFAMGR 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           D   + + LE    V  R E V  +   G + +D ++ +N   M
Sbjct: 300 DLCDIKKGLENFEAVSHRGEVVTLDD--GSVVIDDSYNANPDSM 341


>gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM 10]
 gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis FV-1]
 gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis CO92]
 gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10]
 gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CO92]
 gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D106004]
 gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D182038]
 gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 458

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 42/353 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I EV+ D+R + AG +FVA+ G + DGH F   AIA GA A++VS           +  
Sbjct: 28  EITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSK---------RLLV 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L  FA+ +  + P  I+A+TG+SGK+SV      I ++ G   +  G
Sbjct: 79  GGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYTAG 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 +F  D  +    P+ L   L   +      + + A+  G   +  D  +  +  
Sbjct: 139 ------NFNNDIGV----PLTL---LRLTAEHDFAVIELGANHVGEIAYTTDLSRPESAL 185

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKR 259
             NL   H++   +      AK  +F   LP    AII AD           ++K V + 
Sbjct: 186 VNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHNKRVWRF 244

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + +A   +       +         +H+    T+++E        PLPG+  + NAL AA
Sbjct: 245 SPHAAEHIDFYASDVRITPQLTSFTLHSPFG-TVAIE-------LPLPGQHNIANALAAA 296

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            L +++G D A V + L +L  VPGR   V      G++ +D ++ +N   MI
Sbjct: 297 ALAMSVGADLAAVRQGLAQLQAVPGRLFPVPLAE--GQLLLDDSYNANVGSMI 347


>gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 476

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 44/370 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +++DSR ++   +++ I+G + DGH FI  A A GA A++  S + L  +   I + 
Sbjct: 38  IHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACANGAAAVLCDSDH-LPAWQGKIDAG 96

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I+ V +T + +   A+    ++   ++AVTG++GK++    +  +          +G 
Sbjct: 97  --IVGVADTFEAMRALAAANRARYDIPVVAVTGSAGKTTTKDLIASV--------LSMGY 146

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKA-LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            +  +    +N +  P  ++ L  A  + +   G+ H    A S G        ++   G
Sbjct: 147 QTMKTQGNFNNEVGVPLTLFQLTPAHEAAVVEMGMNHPGEIARSIGE-------VRPHIG 199

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H++   +++    AKM +F   + K+  A+I  DD Y + ++ R +    RV
Sbjct: 200 VITNIGSAHLENLGSKENTLKAKMEIF-GTMEKDDIALINGDDPYLRRIVARDY----RV 254

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + VG +     LK      +   +    +G  F F +  PG   VYN L+A    I IG 
Sbjct: 255 VRVGIREPDADLKAEAIREDLSGLYFEADGVPFHFKW--PGIHNVYNCLIA----IWIG- 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR------GGRIYVDYAHTSN--SLEMILKNIRTI 379
                  HL+   +  G   FV + +R      GG  +V+ A+ +N  S+   +  +  +
Sbjct: 308 ----RYYHLDDAAIQAGLDAFVPSGNRMQMAEVGGLRFVNDAYNANPESMRAAMDTVCAV 363

Query: 380 TSGRIIVVFG 389
             GR I V G
Sbjct: 364 AEGRKIAVLG 373


>gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
 gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
          Length = 454

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 143/331 (43%), Gaps = 32/331 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E +I+ V++D+R +  G +F+ ++G   +GH F  +A+  GA A++ +   +      
Sbjct: 22  FGEEQIHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQKET------ 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P+++VD+T   L   A     +    ++ +TG++GK++    +  + Q    ++
Sbjct: 76  NPPEGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQ----TT 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +Q+  T    +F  +N +  P  I     LS      +  + +  S+ G  +   +  + 
Sbjct: 132 YQVHKTD--GNF--NNHIGLPLTI-----LSMPKGTEIAVLEMGMSAKGEIEFLSNLAEP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A   TN+G  H+    +++A  +AK  + + L  KE     Y  D     + +RA    
Sbjct: 183 DAAVITNIGESHMQDLGSREAIADAKCEITKGL--KEDGTFYYLGD--EPLIRERATQLS 238

Query: 265 CRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +V + G       K  H+ ++      +     VEG    FL P+ G+  V NAL A  
Sbjct: 239 QQVKTFGEADDCDIKVTHINQLA-----EGTEFQVEGYAQGFLIPVLGKHNVKNALAAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +    G++   + + L +  +   R E   T
Sbjct: 294 IGQHFGLNERQIAQGLMQTKLTGMRLELFKT 324


>gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces albus J1074]
 gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
 gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
          Length = 474

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 36/284 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR    G +F A  G + DGH +   A+  GA A++           AT     P LVV
Sbjct: 34  DSRLAAPGSLFAAFAGERADGHDYAATAVETGAVAVL-----------ATRPVGVPALVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+  + L   A  +  +    ++A+TG++GK+S    V Q+  R       + PT   + 
Sbjct: 83  DDVERALGALARAVVERLGTTVVALTGSAGKTSTKDLVAQLLTR-------VAPT-VWTP 134

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHR-LDGIKLIA-GSFTNL 212
            + +N +  P        L+ L ++  T H+ +E  + G+   R L G+     G   N+
Sbjct: 135 GSLNNEIGLP--------LTALRAEADTRHLVLEMGARGIGHIRYLTGLTPPRIGVVLNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI     ++    AK  L E  LP++  AI+ ADD Y +++  R      RV++ G 
Sbjct: 187 GSAHIGEFGGREQIAQAKGELVEA-LPEDGVAILNADDRYVRDMASRTK---ARVVTFGE 242

Query: 273 QGKF-IHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +  I  + V    N +   T+       D    L GE  V N
Sbjct: 243 APEADIRAENVRLTENGRPAFTLHTPSGCGDVTMRLYGEHHVSN 286


>gi|295394740|ref|ZP_06804955.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972336|gb|EFG48196.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 452

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 122/280 (43%), Gaps = 24/280 (8%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN   DH+D++ + +    A +     +       I+ ADD  +  + + A   G  
Sbjct: 172 GVITNAEADHLDHYGSWERVREAFVEFGSHVGNMGGTLIVCADDKGAASIGREAREQGTN 231

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           V+  G     I   +V A  + Q V++S+  EG+++ F   LPG +   NA  A     A
Sbjct: 232 VILYGESD--IADARVNASTHGQGVSVSIAFEGQEYAFDIALPGTYNALNATAAFLSARA 289

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SG 382
           +G D   +++ LE       RFE  G   +G R+Y DYAH    +  +L   + +   S 
Sbjct: 290 VGGDPQGIIQGLESFTGTRRRFELRGIE-KGVRVYDDYAHHPTEVTALLTAAKKVVDPSN 348

Query: 383 RIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI--- 432
           ++ V+F      R +       + AL LAD  IV D  P  EDP      E I  E+   
Sbjct: 349 KVHVIFQPHLFTRTKNFYREFAR-ALSLADDVIVLDVFPAREDPIPGVTGELIAREVTSD 407

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +  +P F       +A+ T +E +   D+++  G G  T+
Sbjct: 408 VTYVPAF------SDAVPTVVERVKPGDIVLTVGAGDVTI 441


>gi|169831592|ref|YP_001717574.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638436|gb|ACA59942.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 455

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 164/402 (40%), Gaps = 58/402 (14%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFV 133
           A  L  +S+ I  + P LV+   R    +  + + G+  H    +AV G  GK++  S V
Sbjct: 64  AAELVVYSSAIPPDNPELVIARKRGLPVIPRAEMLGRLMHQWKGIAVAGAHGKTTTTSLV 123

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             + +R+GL      PT  I        N         +A+A     S  + H S+    
Sbjct: 124 AFLLERTGLD-----PTVIIGGEMNGFGNAKAGGGEYLVAEADESDGSFSLLHPSIVI-- 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                             TN+  DH+DY++T  A   A  R F   +P++  A++  DD 
Sbjct: 177 -----------------VTNVEDDHLDYYRTVDAIRRA-FREFIFKVPRDGVAVLNYDDP 218

Query: 252 YSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFL 303
           + +++   AH     V++ G      Y+    HL   CA+ +  +V    E  G+   F 
Sbjct: 219 FLRQM---AHELPFPVITYGCAPDADYRLAGFHLN--CAV-SSAEVYWRRELLGR---FE 269

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   + NAL    +   +G++   +   L     V  RFE VG  SRG R+  DYA
Sbjct: 270 LTIPGRHNLLNALAVVAVGRHLGLEFPEIARALRDFRGVRRRFELVG-ESRGVRVVDDYA 328

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    ++  L+  R     R+I VF      R +      GK A   AD  +++   P  
Sbjct: 329 HHPTEIKATLEAARQTRPKRLIAVFQPHRYTRTKFLHAEFGK-AFTAADQVLLSRIYPAG 387

Query: 423 EDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           E P   + A +I      I+K  R+E +     +  +QD LV
Sbjct: 388 EKPIPGVTARLIRDE---IQKQQRVEPL-----LFEEQDELV 421


>gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 478

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 156/355 (43%), Gaps = 33/355 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  +  VS D+R +Q G +FVA+   + DGH F+  A+ +GA A +VS           
Sbjct: 20  RDFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASALEKGAAAALVSR------VPEG 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +N P+L+VD+    L         +    I+AVTG+ GK+S    ++ +   +G    
Sbjct: 73  LPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKTSTKEMLRTVLAAAG---- 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                +  S  + +N      P+ LA+ +   +  GV  + +          R+  ++  
Sbjct: 129 ----RTHASEASYNNHWGV--PLTLAR-MPADTEYGVLELGMSHPGEIAPLSRM--VQPH 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  T +   H +   + +   + K  +FE LLP+ + A++  D A S  ++  A + G 
Sbjct: 180 VGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPRGT-AVVNGDLAVSPILIAAAKDKGA 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGL 321
           RV++ G   +  H  ++  +  +  VT++  G+ +   F +     G     NAL     
Sbjct: 239 RVITFGETPRNHH--RLTDLRVRAGVTVA-SGRAWRTPFHMKVASAGRHFAVNALAVIAA 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNS-RGGRIY--VDYAHTSNSLEM 371
             A+G+D A  L  L +     GR   + +  +  R GR +  +D A+ +N   M
Sbjct: 296 ADALGMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDAYNANPTSM 350


>gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosomonas eutropha C91]
 gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosomonas eutropha C91]
          Length = 457

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 161/375 (42%), Gaps = 46/375 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR ++ G +F+A+ G + DG  FI  AI +GA A +VS+   +       +S+   
Sbjct: 27  VSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEKGAVAAMVSTDTVI----VPTKSDFGW 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V++TR      A+         ++AVTG++GK++V   +  I +    S   +  T  
Sbjct: 83  IKVNDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVKEMIAAIFRHEFGSGNVLATTGN 142

Query: 153 ISS-------FAQDNRLTTPSPIYL----AKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +++         Q N   T + I +    A  ++YLS      ++V              
Sbjct: 143 LNNDIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQLAAPTIAV-------------- 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   TN G  HI++  T +A   AK  +F   L  +  AII ADDAY++  + R  
Sbjct: 189 -------ITNAGTAHIEHLGTTEAIARAKGEIFTG-LGAQGIAIINADDAYAQ--LWRQL 238

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               ++L  G         +  +  ++    + +     +    +PG   +YNAL AA  
Sbjct: 239 AGSRQILDFGITNPAAIRAQQMSSSSEAAWLLQLPDDKVEITLQVPGRHNIYNALAAAAA 298

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
             A GI +  + E L      PGR +  VG       I +D  + +N  S++  L N+  
Sbjct: 299 ATAAGISTTSIAEGLHNFMGTPGRLQKKVGLYQ---SILIDDTYNANPDSMQAAL-NVLA 354

Query: 379 ITSGRIIVVFGCGGD 393
              G+ I++ G  G+
Sbjct: 355 EMPGKKILIMGDMGE 369


>gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 452

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 157/385 (40%), Gaps = 44/385 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS +S  I+   +FVAIV N+ DGH FIP A++ GA+A++VS     QD       N
Sbjct: 23  IQTVSINSNEIKQDALFVAIVANR-DGHDFIPSALSYGAKALLVSKK---QDI------N 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV------QQICQRSGLS 143
            P +V  NT K L   A          I+++TG+ GK++V   +      +++    G  
Sbjct: 73  IPQVVCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVKEMIVTLLGGKKVHFTQGNF 132

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  +G   T+        L TP  +  A   +  S  G    + E             I+
Sbjct: 133 NNYLGVPMTV--------LETPQDVDFAVIETGTSVAGEIKAAAEI------------IQ 172

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+G  H++  +T       K  L +  LPK+   I+  DD   + +   A   
Sbjct: 173 PNVAMITNVGASHLENLKTLDGVMIEKGELLKA-LPKDGFCIVNLDD---ERIPAYADKL 228

Query: 264 GCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            C     S+  Q   I +     I     V I +  K++ +  P  G+  + N+++A   
Sbjct: 229 DCNKITCSMSNQDADIIILDYQVIPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAIAS 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A  ++    L++ + +    GRF     N +   +   Y  ++ +++  + ++     
Sbjct: 289 VVAARLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIADLAEFDG 348

Query: 382 GRIIVVFGCG--GDRDQGKRPIMGK 404
            ++I +      GD  Q     MG+
Sbjct: 349 KKVIAITSMRELGDEGQNYHRKMGQ 373


>gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M6190]
 gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis ES14902]
          Length = 445

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 457

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 132/304 (43%), Gaps = 34/304 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +S+DSR I+ G +F+ + G   +G +F+  A+  G       SA   +  +   R N
Sbjct: 25  ISGISTDSRTIKEGELFIPLKGENFNGEMFVEDALKIG-------SASLTESVNNVGRYN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ VDNT++ L   A     K     +AVTG++GK++    +  +       S +   
Sbjct: 78  KPVIFVDNTKEALHKIAKYYREKFQIPFIAVTGSNGKTTTKDMIYDVL------SMKYNV 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
             T  +F  +N +  P  I+    L+      +    VE    G  + R   +K IA   
Sbjct: 132 LKTQGNF--NNEIGLPLTIF---RLNKKHDMAI----VEMGMSGFGEIRR--LKNIADPN 180

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAG 264
              +TN+G  HI+   +++    AK  L E    KE   +I  ADD     ++K  +  G
Sbjct: 181 VAVYTNIGVAHIEKLGSRENILKAKSELVENF--KEGYTVILNADDDM---LVKLTNKKG 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            + ++ G     +    +       +  + ++G   D    +PG+  VYN+L A  + I 
Sbjct: 236 PQYITYGIDNGDVKAFDIEYKEESVKYKVIIDGYMMDVELNVPGKHNVYNSLAAICIGIK 295

Query: 325 IGID 328
            G++
Sbjct: 296 FGVN 299


>gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
 gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
          Length = 452

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 9/123 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R I  VS+D+R I AG +FVA+VG + D H F  QA+  GA A++VS           
Sbjct: 20  NDRAIESVSTDTRAIDAGALFVALVGERFDAHDFAAQAVESGAGALLVSR---------I 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + S+ P L+V +T+  L    + ++       +A+TG++GK++V   V  I ++ G   F
Sbjct: 71  VESDVPQLLVKDTKLALGQLGALVHQSCQTPTVAITGSAGKTTVKEMVASIMEQKGRVLF 130

Query: 146 QIG 148
             G
Sbjct: 131 TAG 133


>gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax
           ferrireducens T118]
 gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodoferax ferrireducens T118]
          Length = 480

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 164/383 (42%), Gaps = 32/383 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88
           I  V +D+R +  G +FVA+ G   D H F+ QA AQGA A  V  A    D  A +R+ 
Sbjct: 29  IERVHTDTRTLAPGDLFVALRGEHFDAHDFLAQAKAQGAVA-AVCQASDAGDVEAKLRAV 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P L+V +T+  L+  A++   +    ++AVTG++GK++V   +  I     L +++  
Sbjct: 88  GLPGLLVPDTKLALAQLATQWRAQFTLPLIAVTGSNGKTTVTQMIAAI-----LRAYK-- 140

Query: 149 PTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLI 205
           P + +S+    +N +  P  +   +    ++    G+ H    A+   + Q     + L+
Sbjct: 141 PQAYLSTQGNLNNDIGVPLTVLRLRRQHEIAVVELGMNHPGEIATLAAIAQPT---VALV 197

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N  R+H+++  T +        + +  LP    A+  ADD YS      A  AG 
Sbjct: 198 ----NNAQREHLEFMATVERVAQENGSVIDA-LPAHGVAVFPADDTYSP---LWADKAGS 249

Query: 266 R-VLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           R V+  G         +V  +         QV +S       +  P+ G   V N+L A 
Sbjct: 250 RVVMRFGSAADGAGAAQVRCLQADWSGVAWQVAVSTPAGALQYTLPIAGLHNVKNSLAAV 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNI 376
              +A G+    +   L     V GR   +       +I  VD ++ +N  S+   +  +
Sbjct: 310 ACTLAAGVPLKHIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPDSVRAAIDVL 369

Query: 377 RTITSGRIIVVFGCGGDRDQGKR 399
            ++   R++V+   G   DQG +
Sbjct: 370 ASLPGPRLLVLGDMGEVGDQGPQ 392


>gi|313903885|ref|ZP_07837274.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313466073|gb|EFR61598.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 610

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E+ S S  ++ G +FVAI G + DG  F  +A+ +GA  +V                 
Sbjct: 25  VGEIRSHSARVEPGDLFVAIPGRRHDGAAFAGEALRRGARVVVAQQPPGQPLPPGVS--- 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              L V   R  LS  A+  YG HP     ++ VTGT+GK++    +  +   +G+ +  
Sbjct: 82  --WLQVPCARSALSRLAANRYG-HPSRRLVVVGVTGTTGKTTTTLLLHHLLSATGIPAGL 138

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG              LTTP P+ L + L  ++  G     +E SS G DQ R+D +   
Sbjct: 139 IGSLEVRAGGHCWPGNLTTPDPLDLHRYLRVMADAGCRVAVMEVSSQGADQRRVDDVAFD 198

Query: 206 AGSFTNLGR-DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  TNL   +H++YH T + Y  AK R F  ++P     +++  +A
Sbjct: 199 LGVVTNLAPLEHLEYHPTYEDYAAAKGR-FVAMIPPGGGVLMHEGEA 244


>gi|91200088|emb|CAJ73131.1| similar to UDP-N-acetylmuramate-L-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 498

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 35/274 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKAL 174
           +A++GT GK++ ++ +  I +++     ++ PT  I     D   N       +++A+A 
Sbjct: 126 IAISGTHGKTTTSAMISTILKKA-----ELDPTYVIGGEVPDIGGNAHLGKGNLFVAEAC 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y SS                   LD +  I G  TN+  DH+DY+   +   NA    F
Sbjct: 181 EYNSS------------------FLDLVPSI-GVITNIEEDHLDYYGNLEEIVNA-FGHF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVT 292
             L+ K    ++  DD   + V   A  + C+    S+ +   +   K +       +  
Sbjct: 221 ANLIAKNGLLVVNDDD---RNVAVAAKRSVCKRETYSLRHTSHWYAKKILPTTQGINKFR 277

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   GK F DF   +PG   + NAL A  +C +IG+D  ++   LE       RF+ V  
Sbjct: 278 VYNRGKIFGDFWLKIPGSHNILNALAAIAVCTSIGVDKEIIKTSLESFKGAKRRFQIVAI 337

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    I  DYAH    +++ LK  R +   R I
Sbjct: 338 KNN-ITIIDDYAHHPTEIDVTLKAARELYPARKI 370


>gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 479

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 37/234 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F A+ G + DGH F  +AI  GA A++ +      D      +  P +VV
Sbjct: 34  DSREVRPGSLFAALPGERVDGHDFARKAIEAGATAVLAARPVGTAD------APVPAIVV 87

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +    +   A  +  +    ++A+TG++GK+S    + Q+ QR G + +  G       
Sbjct: 88  PDVIAAMGALARAVVERLDATVVALTGSAGKTSTKDLIAQLLQRRGPTVWTPG------- 140

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHRLDGIKLIA-------G 207
            + +N +  P        L+ +S+   T H+ +E  + G        I+ +A       G
Sbjct: 141 -SLNNEIGLP--------LTAMSADEATLHLVLEMGARGKGH-----IRYLATLTPPRIG 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259
              N+G  HI     ++    AK  L E L P E    A++ ADD   + +M R
Sbjct: 187 LVLNVGTAHIGEFGGREQIAEAKGELVEALPPAEEGGVAVLNADDPLVRAMMSR 240


>gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM
           555]
 gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016]
 gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555]
 gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 457

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 132/335 (39%), Gaps = 42/335 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I Q I    + +V ++A S  +       +  I ++D        F   +   H  NI A
Sbjct: 61  ISQNITSDIDLVVYTAAISKNNEELLKAKDLNIPLMDRAE-----FLGEIMKGHKYNI-A 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSY 176
           V+GT GK++  S +  I   + L      PT  +         N     SP ++ +A  Y
Sbjct: 115 VSGTHGKTTTTSMLSSITLEANLD-----PTILVGGNLDIIGGNVRIGNSPFFITEACEY 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S              L      GI L      N+  DH+DY++  +   NA ++ F +
Sbjct: 170 KESF-------------LKFFPFIGIIL------NIDADHLDYYKDIEEIQNAFIK-FGK 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+PKE   +  ADD   + + K   N  C V+S G +   I  K +C    + +    V 
Sbjct: 210 LIPKEGYLVCCADD---RRMEKIISNVNCNVMSYGIETGDITAKNIC-FDKEGRAFFEVY 265

Query: 297 GKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             D   F     +PGE  + NAL +  + + + I    ++  L+       RFE  G   
Sbjct: 266 KSDKKLFSLNLSVPGEHNILNALASISVSLILNISVDNIINGLKSFKGTHRRFEIKG-QR 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +G  +  DYAH    ++  L   +     RII VF
Sbjct: 325 KGVVVIDDYAHHPTEIKATLNAAKNYPHKRIICVF 359


>gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 472

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 147/372 (39%), Gaps = 47/372 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G IFVA+ G   DGH +I +  A+GA   +V  A+   + +         LVV
Sbjct: 36  DSRAVVDGAIFVALQGEHTDGHQYIDEVFAKGAHWAMVKKAWYESEGAPAAPEGCGFLVV 95

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++    L   A+         ++AV G++GK++    V  +           G T   S 
Sbjct: 96  EDPVAGLQRLAAIYRQTFSIPVIAVGGSNGKTTTKEMVAAV--------LGTGFTVQTSK 147

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
              +N L  P  +     L      G+  V +  +  G  +  L+  +   G  TN+G +
Sbjct: 148 GNLNNHLGVPLTL-----LQLRRQTGIAVVEMGINHPGEMELLLELARPTHGLLTNIGHE 202

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+++    +     + RLF  L        + ADD + KE  +            G  G 
Sbjct: 203 HLEFLLNLEGVAAEETRLFRYLQQHGGTCFVNADDLWLKEAAE------------GLTGS 250

Query: 276 FIH-----LKKVCAIHNKQQVTISVEGK-DFDFL---------FPLPGEFQVYNALVAAG 320
           F +      +  C     + + +   G+  F+F+             G+  V NAL AA 
Sbjct: 251 FTYGTADDSQIAC---QARHIAVDRSGRVSFEFVSGGLSERIALHFIGKHNVINALAAAA 307

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRT 378
           +    G+    + + LE L   PG ++ +     GG + ++  Y   S+S+ + +  +  
Sbjct: 308 VGTYFGLSLEQIKKGLEALRPSPG-WKRLEVQDAGGVVLINDTYNANSDSMRLAIDALVD 366

Query: 379 I-TSGRIIVVFG 389
           I  SG+ I V G
Sbjct: 367 IPCSGKKIAVLG 378


>gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
 gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
          Length = 463

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 155/363 (42%), Gaps = 32/363 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV  AY            
Sbjct: 23  LGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVDEAY------VPTADC 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V +T + L   A+         ++A+TG++GK++    +     + G   +    
Sbjct: 77  GPLVAVKDTLQALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYY---- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
                + A  N L    P+Y A       ++    V +E   +   +  +D +  IA   
Sbjct: 133 -----NEANYNNLIG-MPLYAANL-----TEDAEFVVLEMGMNSPGE--VDALSRIARPD 179

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   
Sbjct: 180 VAVITNVGPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCA 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R++S G  G    ++          +T+   G++             Y+  + A +  A 
Sbjct: 239 RIISFGV-GAGADVQIFRREEPSNSITLRCFGEELQCNLKSGARHLAYSVAITAAVGRAF 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI--LKNIRTITSG 382
            ID       +E+   + GR +   T  +G  I  +D A+ +N L M+  ++N+  +   
Sbjct: 298 SIDLTQARGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHA 357

Query: 383 RII 385
           R++
Sbjct: 358 RVL 360


>gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 463

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 189/468 (40%), Gaps = 59/468 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V  DSR I+ G +FVA+VG + DGH F+ +A A+GA A +V  A+            
Sbjct: 25  VRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFARGAVAALVDRAH----VPRLPEGL 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV +T   L   A+     H   ++ +TG+ GKSS    V  +      +S +   
Sbjct: 81  GPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKSSTKEVVWSV------ASQRFRA 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
             +  SF  +N +  P        LS +     T V V           +  +  IA   
Sbjct: 135 IRSQRSF--NNEIGLP--------LSLMEIGSDTEVVVLEIGGAYAPGEISRLAEIARPT 184

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+   H+    + +A    K  L    LP++  A++  DD     V   A    C
Sbjct: 185 IGVVTNVSHSHLARMGSLEAIAATKAELPAS-LPEDGVAVLNGDDL---RVRLMADKCRC 240

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVYNAL 316
           RV+  G       L   C +  +   +  ++G  FD L          PL G+  V+  L
Sbjct: 241 RVIRYG-------LAPDCEVRAENVESHGLDGISFDLLVDGGRHHVHVPLLGQHSVHTVL 293

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILK 374
               + +A+G+    V E L  L     +   +   + GG   +D  + +N  S    L 
Sbjct: 294 AGVSVGLALGMS---VEETLPGLRDPSIQLRLLVVPAIGGATLIDDTYNANPTSSLAALN 350

Query: 375 NIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +  + + R I  FG     G   ++G R I+GK A  + D         R    E + +
Sbjct: 351 LLAELPARRRIAAFGDMLELGSYEEEGHR-IVGKRAAAVVDRLFTMGPRARIIADEAVAS 409

Query: 431 EII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
            +    +     K + I+A++   E + + DV++V G +G +  H+V 
Sbjct: 410 GLAPDAVVAVDTKQDLIDALK---ETMREGDVVLVKGSRGIQLEHVVA 454


>gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 462

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 160/374 (42%), Gaps = 49/374 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS      +FS   +   
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVGKA 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + I+ V+N  K L   A     K    ++A+TG++GK+S    V  +        +++  
Sbjct: 83  SYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVGAVLAE----KYKVFK 138

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T    +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I  
Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +++    AK+ +  +   K+S  II  DD    +++    +   +V
Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQVYNAL 316
             +G   KF          N   + +  E  +FD L             +PG+  V N+L
Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A      + I+   +   ++ L     R + V    +G  I  D Y  + +S++  +  
Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352

Query: 376 IRTITSGRIIVVFG 389
           ++ I   R I + G
Sbjct: 353 MKNIKGKRTIALLG 366


>gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
 gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
          Length = 476

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 159/373 (42%), Gaps = 50/373 (13%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           +SDSR +  G +F A+ G + DGH F+ QA+ +GA  +VV   Y++   S   R    ++
Sbjct: 34  NSDSRRVHPGDLFWALKGERFDGHDFVHQAVREGASGVVVQREYTI---SVENRPEIAVI 90

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            VDNT + L   A+    +H   + A+TG+SGK++       I +             T+
Sbjct: 91  AVDNTLRALGDLAAWWRRQHTAKLAAITGSSGKTTAKEMTAAILEME---------NKTL 141

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT--- 210
            +    N L    P+ L K L     + V  + +   +H  +  RL     IAG  T   
Sbjct: 142 KNPGNHNNLIG-LPVTLLK-LDESHKRAVVEMGM---NHKGEIARL---TEIAGPDTAAI 193

Query: 211 -NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H++          AK  L     P ++  I+  DDA    +MK A     + ++
Sbjct: 194 LNVGMAHLERLGDMDGVAEAKTELIAHASP-DTKIILNGDDAV---LMKHATKFDRKFVT 249

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAG 320
            G       +KK   IH     T  ++G  FD  +         P+ G   V NAL AA 
Sbjct: 250 FG-------MKKGNHIHAVNIETKGLKGIRFDLRWSDDTWPIQLPVSGVHNVKNALAAAA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEM-ILKNIR 377
           + +++      +   L     V GRF+ +     G  I +D  + +N  +LE  +L  ++
Sbjct: 303 IALSLKEPVENIARGLRNFKGVKGRFQCIPL--EGDIILIDDTYNANPSALETALLSALK 360

Query: 378 TI-TSGRIIVVFG 389
            +   GR+IV  G
Sbjct: 361 MVDRDGRLIVGLG 373


>gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 468

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 39/250 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I  G +FVA+ G + DGH FI +A  +GA   +VS           + S   I
Sbjct: 29  ISTDTRTIHKGDLFVALEGERFDGHYFIDEAFKKGAIGAIVSRE---------VESKNII 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T K L   A     +    ++AVTG++GK++    +  I  R            T
Sbjct: 80  IKVRDTLKTLGDIAKIYREEFDIPVIAVTGSNGKTTTKEMLGYILTRE---------FKT 130

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA------ 206
           + +    N        ++   L+ L     T ++V      ++ + L GIK +       
Sbjct: 131 VKAKGSYNN-------FVGVPLTLLEMDRHTQLAVLE----METNLLGGIKRLCEIAKPS 179

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  H+ + +T++  +  K  L E  LP++  A++ ADD Y  ++ + +     
Sbjct: 180 VGVVTNIGDTHLQFLKTREGVYQEKSELVES-LPEDGVAVLNADDPYVLKMKEISRTK-- 236

Query: 266 RVLSVGYQGK 275
           R+++ G + K
Sbjct: 237 RIVTFGVENK 246


>gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
 gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
          Length = 463

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 31/331 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           + +++  +++D+R I+AG +F+AI G   DGH F+ QA+AQGA A++V  +  +Q     
Sbjct: 20  QNQQVLNINTDTRTIKAGEVFLAIKGPNFDGHKFVEQAVAQGAVAVIVDHSVKVQ----- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P  +V + R  L    + +  +     +A+TG+ GK++V      I  + G    
Sbjct: 75  ----VPQFIVPDARLALGKLGAAVMAEVNPKTIAITGSVGKTTVKEMCAAILSQHGEV-- 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                +T  +F  +N +  P  +     L          + + A+  G   +  D +K  
Sbjct: 129 ----LATKGNF--NNDIGVPLTL-----LRLEPKHQYAVIELGANHIGEIAYTTDLVKPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+   HI+   +      AK  +F   L     A+I AD  Y    +     +  
Sbjct: 178 VAVVCNVAAAHIEGFGSLDGVAQAKGEIFSG-LKAGGIAVINADSPYVDYWLTSLDKSTL 236

Query: 266 RVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              S+  Q     + IHL K+     +    +    +      P+ G+  + NAL+A  L
Sbjct: 237 CQFSMSQQLDVWPENIHLDKL----GRAGFDLCTPTERIAVQLPIAGKHNITNALIACAL 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            + +G+  A V + L  + +V GR   +  N
Sbjct: 293 TLPLGVTLAHVAQGLASMPMVQGRVNLIEVN 323


>gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 451

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 164/371 (44%), Gaps = 47/371 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+D+R +  G +FVA+ G + D H F  QA+A GA A++V    SL         
Sbjct: 23  EITTVSTDTRTLGKGALFVALRGERFDAHDFCDQAVAAGASALLVERELSLA-------- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV ++ K L      +  +    +LA+TG+ GK++V      I +  G       
Sbjct: 75  -IPQLVVTDSLKGLGHIGKLVRERINPKVLAITGSCGKTTVKEMTTAILRHEG------E 127

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--GVTHVSVEASSHGLDQHRLDGIKLIA 206
             +T  +F  +N +  P  +   +     +    G  H    A +  L   R D     A
Sbjct: 128 VLATAGNF--NNEVGVPLTLLRLEPQHQFAVMELGANHPGEIAWTTSLA--RPD-----A 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+   H++   + +  F+AK  +FE  L ++  AI+ AD A+  +   +A    C 
Sbjct: 179 ALINNVAAAHLEGFGSLEGVFHAKSEIFEG-LSEQGTAIVNADSAFWPK--WQAAGIHC- 234

Query: 267 VLSVGYQGKFIHLKKV------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             S+  Q +  H + +      CA    + V ++  G +      +PG   V NAL AA 
Sbjct: 235 AFSIEDQNQPFHARGIALNGQGCA----EFVMVTPNG-ELSLTLAIPGRHNVANALAAAA 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            C+A+G   A V   LE++  V GRF        GG   VD  + + S+E +L  I  +T
Sbjct: 290 GCLALGASLASVKAGLEQMAPVKGRF---CVQRWGGLTLVDDTYNA-SVESVLAGIDALT 345

Query: 381 S--GRIIVVFG 389
           +  G  ++VFG
Sbjct: 346 AMGGYKVLVFG 356


>gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
          Length = 455

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 135/320 (42%), Gaps = 42/320 (13%)

Query: 18  LSIFPMQWRE---RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           L   P+Q  E   R    +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V 
Sbjct: 14  LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73

Query: 75  SAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             Y    D +A       +L VDNT       A     +    ++ +TG+ GK++    +
Sbjct: 74  RDYQPPSDLAA-----GHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELI 128

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +    G     + P +       +N +  P  +       + ++  V  + +      
Sbjct: 129 AAMLAVRGPV---LKPEANY-----NNEIGVPKTVLQIDPDHHWAA--VLEMGMRGRGQI 178

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            +  R+    +     TN+G  HI    ++QA   AK  L  + L     AI+ AD+   
Sbjct: 179 AELARIAQPNI--AVITNVGTAHIGLLGSEQAIAEAKCELLAQ-LSGTGLAILNADNHRL 235

Query: 254 KEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +R +   CR   +     QG+ I L+           T+ VEG+ F    PLPG  
Sbjct: 236 IATAQRLNLPRCRTYGLQNGDLQGQLIDLE-----------TLVVEGQRFR--LPLPGAH 282

Query: 311 QVYNALVAAGLCIA--IGID 328
              N L  AGL IA  +G+D
Sbjct: 283 NALNFL--AGLAIAQELGLD 300


>gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
 gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
          Length = 452

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 41/326 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N+V++D+R + AG +FVA+VG + D H F  +AIA GA+A++VS    +          
Sbjct: 24  LNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEAIANGAQALLVSKHLPVA--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV++TR       + +  +    ++A+TG+SGK+SV      I ++ G + +  G 
Sbjct: 75  VPQVVVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGETLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +N    P  +     L   +      + + A+  G   +  D +K  +   
Sbjct: 135 L--------NNDYGVPMTL-----LRLTAEHQYAVIELGANHQGEIAYTTDLVKPESALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---------YADDAYSKEVMKRA 260
            NL   H++   +      AK  +F+  LP    AI+         + +    K V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFQG-LPAHGIAILNDESNDWLNWQNTLQDKTVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             AG       +  + I + +     +     ++      + + PLPG   + NAL AA 
Sbjct: 241 PQAG----ECDFSARDIRIAQ-----DGTHFVMNTPRGTAEIVLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346
           L +++    + V + L+ L  VPGR 
Sbjct: 292 LALSVDAPLSAVQQGLKNLQSVPGRL 317


>gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
 gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
          Length = 450

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 168/402 (41%), Gaps = 42/402 (10%)

Query: 13  ELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+N +  +   Q    +I EV+ D+R + AG +FVA+ G + DGH F   A        
Sbjct: 3   ELLNAEFIVSDKQGDNIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDA-------- 54

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
            V++       S  +    P LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV  
Sbjct: 55  -VAAGAGALLVSKRLLVGVPQLVVKDTRLALGQFAAWIRQQVPARVVALTGSSGKTSVKE 113

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I +  G   +  G      +F  D  +    P+ L   L   +      + + A+ 
Sbjct: 114 MTAAILRECGNVLYTAG------NFNNDIGV----PLTL---LRLTAEYDFAVIELGANH 160

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G   +  D  +  +    NL   H++   +      AK  +F   LP    AII AD  
Sbjct: 161 VGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSN 219

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                 +  HN   RV   G Q       +   V         T+           PLPG
Sbjct: 220 DWPHWQETLHNK--RVWRFGLQAAEDIDFYATDVQITPQATHFTLHSPFGTVTIELPLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN- 367
              + NAL AA L +++G D + V + L +L  VPGR   +   +  G++ +D  + +N 
Sbjct: 278 RHNIANALAAAALAMSVGADLSAVRQGLMQLQAVPGRLFPIQLAT--GKLLLDDTYNANV 335

Query: 368 -SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            S+    + +  +   R++VV    GD  +     +G+ A+D
Sbjct: 336 GSMTAAAQVLAEMPGYRVMVV----GDMGE-----LGETAID 368


>gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
 gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
          Length = 455

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 137/321 (42%), Gaps = 44/321 (13%)

Query: 18  LSIFPMQWRE---RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           L   P+Q  E   R    +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V 
Sbjct: 14  LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73

Query: 75  SAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             Y    D +A       +L VDNT       A     +    ++ +TG+ GK++    +
Sbjct: 74  RDYQPPSDLAA-----GHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELI 128

Query: 134 QQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             +           GP   T +++  +N +  P  +       + ++  V  + +     
Sbjct: 129 AAMLAVR-------GPVLKTEANY--NNEIGVPKTVLQIDPDHHWAA--VLEMGMRGRGQ 177

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             +  R+    +     TN+G  HI    ++QA   AK  L  + L     AI+ AD+  
Sbjct: 178 IAELARIAQPNI--AVITNVGTAHIGLLGSEQAIAEAKCELLAQ-LSGTGLAILNADNHR 234

Query: 253 SKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                +R +   CR   +     QG+ I L+           T+ VEG+ F    PLPG 
Sbjct: 235 LIATAQRLNLPRCRTYGLQNGDLQGQLIDLE-----------TLVVEGQRFR--LPLPGA 281

Query: 310 FQVYNALVAAGLCIA--IGID 328
               N L  AGL IA  +G+D
Sbjct: 282 HNALNFL--AGLAIAQELGLD 300


>gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
 gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
          Length = 460

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 161/381 (42%), Gaps = 54/381 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +IN V +DSR I  G +F+A+ G K D H F    + QGA A++VS    +         
Sbjct: 29  QINTVKTDSRKIVCGGLFIALKGEKFDAHDFAADVVKQGAGALLVSRRLDI--------- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P +VV +TR  +   A  +  +    ++A+TG+SGK+SV      I ++ G + +  G
Sbjct: 80  DCPQVVVKDTRLAMGKLAGWVRQQSKARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAG 139

Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIA 206
                 +F  +N +  P  ++ L +   +   + G  H+   A +  + +         +
Sbjct: 140 ------NF--NNDIGVPLTLFRLTEEHQFAVIELGANHIGEIAYTTAMTRPE-------S 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               NL   H++   +      AK  +F  L P E  AII  D          +++ G  
Sbjct: 185 ALVNNLFSAHLEGFGSLAGVAKAKGEIFAGLAP-EGTAIINLD----------SNDWGNW 233

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVE-------------GKDFDFLFPLPGEFQVY 313
              +  Q +  H     A       T  VE             GK  + + PLPG   V 
Sbjct: 234 QHGIREQQRVWHFSVTPAAGADFYATDIVEQPLATHFCLHTPIGK-IELILPLPGRHNVA 292

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI- 372
           NAL A+ L I++G     +   L  L  VPGR   +  ++  G+  +D  + +N+  MI 
Sbjct: 293 NALAASALAISVGASLEDICAGLSALKAVPGRLFPIHLSA--GKTVLDDTYNANTGSMIA 350

Query: 373 LKNIRTITSGRIIVVFGCGGD 393
             N+ +  SG  ++V G  G+
Sbjct: 351 AANVLSQMSGYRVMVVGDMGE 371


>gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 259

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 25/222 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R ++AG +F+A+ G + DGH F+ QA+AQGA  +++S     +D    I S   +
Sbjct: 29  ISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQGAAGVLISR----RDI--VIPSGIAV 82

Query: 93  LVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ++ D+TRK L   A   RL    P  ++AVTG++GK++       +      S F++  T
Sbjct: 83  VLTDDTRKALQNLACFHRLRFDIP--VIAVTGSNGKTTTKDMTAAVLA----SRFKVLKT 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +N +  P  +     L+  +   V  V +   S G  +   +      G  T
Sbjct: 137 EA----NYNNEIGLPLTL-----LNLTADHQVAVVEMGMRSKGEIRELAEVALPTVGVVT 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           N+G  HI+   + +   +AK  L E +  +E   I+ AD+ Y
Sbjct: 188 NVGETHIELLGSLENIASAKAELVENI--QEGLVILNADNPY 227


>gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
 gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
          Length = 455

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 140/324 (43%), Gaps = 31/324 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  V SDSR I    +FVA+ G K DGH F   A+  GA A++VS   +L       
Sbjct: 21  DTEILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLALENGASALLVSRELAL------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P L+V +T+K +    + L        +A+TG++GK+SV   V  I  +     + 
Sbjct: 74  --DIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKTSVKEMVASILSQHHKVLYT 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQHRLDGIK 203
            G      +F  +N +  P        L+ L  +G     V    A+  G   +    +K
Sbjct: 132 AG------NF--NNEIGVP--------LTLLRLEGDEEYGVFELGANHLGEIDYTSSLVK 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+   H++   + +    AK  +F   L  +  A+I  DD ++ +VM+ A + 
Sbjct: 176 PDVAMVNNVASAHLEGFGSLEGVAKAKSEIFNH-LSADGIAVINLDDPFA-DVMRGAASQ 233

Query: 264 GCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             ++  ++  Q      + V     + + T++          PL G  QV NAL A  +C
Sbjct: 234 FTQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVSNALAATAIC 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRF 346
           +++G+    VL  L+ +  V GR 
Sbjct: 294 LSLGLSLEEVLSGLKLVEPVKGRM 317


>gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 454

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 50/379 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ + +I  V+ DSRHIQ G +F+   G   DGH +  QA+  GA A      +  +D +
Sbjct: 20  QYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGAGA-----TFFQRDST 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGL 142
            T  +N P++ V+NT   L   A + Y +H    ++AVTG++GK++    ++ +   SG 
Sbjct: 75  LTAPTNGPVVFVENTLTALQQLA-KAYLQHVAPTVIAVTGSNGKTTTKDMLENVL--SG- 130

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
             F++  T        +N +  P        L+ L     T VS+ E    G   H ++ 
Sbjct: 131 -KFRVQKTQG----NYNNEIGMP--------LTILELNEDTEVSILEMGMSGF--HEIEL 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSK-- 254
           +  IA       TN+G  H+    +++    AK  +   L  K     IY  D+   K  
Sbjct: 176 LSNIAQPDFAVITNIGESHMQDLGSREGIAKAKFEIVSGL--KSEGYFIYDGDEPLLKPH 233

Query: 255 -EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            E +  AH      +SVG   K   ++     H ++ +T +V   D  +   + GE  + 
Sbjct: 234 VETLTSAHQ-----VSVGLSAKN-DMQCQMVSHLEEGITFTV-NDDVTYTISILGEHNMR 286

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMI 372
           NA +A  +   +G+    + + L  L +   R + F+  N   G + ++ A+ ++   M 
Sbjct: 287 NATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPN---GAMVINDAYNASPTSMK 343

Query: 373 LKNIRTIT--SGRIIVVFG 389
              I T++   G  I+V G
Sbjct: 344 AA-IDTLSHMKGETILVLG 361


>gi|302384555|ref|YP_003820377.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
 gi|302195183|gb|ADL02754.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
          Length = 459

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 143/340 (42%), Gaps = 48/340 (14%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILA 119
           AIA G  A  +     +  ++A +  + P       +    L  + L G   K+ EN +A
Sbjct: 56  AIAYGQRAENIKEGIDVVVYTAAVHPDNPEYAEAKEKGLPILSRAELLGQMMKNYENSIA 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALS 175
           V+GT GK++  S + +I     L + +  PT ++    +S   + R+  P  +++ +A  
Sbjct: 116 VSGTHGKTTTTSMITEI-----LLAAEADPTISVGGILNSIGGNIRVGGPG-LFVTEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S      ++E                      N+  DH+D+ +  +       RLF 
Sbjct: 170 YTNSFLSFFPTMEV-------------------ILNIEADHLDFFKDIKD-IRHSFRLFA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQ 289
           E LP     +I  D    +E+ +      C+V++ G      YQ + I   +    + + 
Sbjct: 210 EKLPPNGSLVINNDIESREEITE---GLPCQVITYGKKPGSRYQAEAIRFDE----YARA 262

Query: 290 QVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              + ++G   D +   +PGE  VYN+L AA +C  +GI+  L+ + L++      RFE 
Sbjct: 263 TYDLKLDGNVVDTVTLGVPGEHNVYNSLAAAAVCTELGIEFDLIKKGLKRFTGTNRRFEK 322

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            G  S G  I  DYAH    +   L+  +     ++ V F
Sbjct: 323 KGELS-GVTIIDDYAHHPQEIRATLETAKHYPHNKLWVAF 361


>gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
 gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
          Length = 457

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 140/325 (43%), Gaps = 36/325 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q  +++I  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 76  SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   +++A 
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEI---SNHAI 242

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  Y  K IH       H  Q  T   IS +G + +   P  GE  V NAL A  L
Sbjct: 243 QYFNGKDYSAKNIH-------HTSQGSTFTLISPQG-EIEITLPYLGEHNVKNALAATAL 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346
            + +G     V   LE+   V GR 
Sbjct: 295 AMNVGATLTDVKAGLEQRSQVKGRL 319


>gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK405]
          Length = 456

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 164/411 (39%), Gaps = 65/411 (15%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78
           Q+    +     DSR I++G +FV + G + DGH FIP A AQGA A      V   AY 
Sbjct: 20  QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSEHPVAEGAY- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                         ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 78  --------------ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            S       G  + +IG   T+    +D                 +   G  H+      
Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D H L  + K   G  T +G  H+++  ++      KM++ + L  KE   I+ AD 
Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKEGLLIVPAD- 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +++     A C+++  G     I L ++     K  ++      D     P+ G++
Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRLE--ERKDSLSFECNFLDQRIDLPVTGKY 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA++AA   +  G+  A + +   KL +   R E+    + G  I  D Y     ++
Sbjct: 274 NATNAMIAAYAALQEGVSEAAIAQAFSKLELTRNRTEWKKA-ANGADILSDVYNANPTAM 332

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +IL+   TI +   GR + V     +     + + G +   L +  IVTD
Sbjct: 333 RLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382


>gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 463

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 5/113 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER++ ++++DSR ++ G +F+AI G + DGH +I  A+++GA+A+V+S   S+Q     I
Sbjct: 23  EREVGDITTDSRLVKKGDVFIAIKGERVDGHDYIQDAVSRGAQALVLSRTPSIQ-----I 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
             +   L VD+T   L   A+    K P   + +TG+ GK+S       I  R
Sbjct: 78  PESVLALEVDDTVLALGKLAAYWRNKMPAKTIGITGSVGKTSTKEVTASILSR 130


>gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
 gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
          Length = 467

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 151/372 (40%), Gaps = 36/372 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V++D+R      +F A+ GN  D H ++ QAIAQG  A+VV     +         N
Sbjct: 25  VETVNTDTRQAVENGLFFALKGNHFDAHHYVDQAIAQGCIALVVEQRMLI---------N 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR  L   A  L  K     +A+TG+SGK++V     +I Q+    + ++  
Sbjct: 76  APQIIVADTRLALGELAKWLKAKLNPKTIAITGSSGKTTVKEMAAKILQKLTACADEVLY 135

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207
           TS       +N L  P + + L +   +   + G  H+   A +  + Q         A 
Sbjct: 136 TSG----NLNNDLGVPLTLLRLTEQHKFAVIELGANHLGEIAYTTSITQPD-------AC 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--------YADDAYSKEVMKR 259
              N+   H++   +      AK  ++  L P E  AII        +  +  S++V   
Sbjct: 185 VVNNVAAAHLEGFGSLAGVAQAKGEIYRGL-PPEGIAIINQASYSSAWQTEIGSRKVQSF 243

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A         V +  + +HL       N     +     + +   P  GE  V N L A+
Sbjct: 244 ALYPSAEHKPVDFSAENVHLHL-----NGSTFMLHSPQGEIEINLPYLGEHNVSNVLAAS 298

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L +A+G D A +   LE+   V GR   +  N     I   Y    +S++  ++ ++  
Sbjct: 299 ALVMAVGADLAAIKAGLEQPVAVKGRLCPLPINRYCLLIDDTYNANVDSMKSAVQVLKNY 358

Query: 380 TSGRIIVVFGCG 391
            + RI  V   G
Sbjct: 359 QAFRIFAVADMG 370


>gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 423

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 127/314 (40%), Gaps = 43/314 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +Q G +FVAI GN  DGH F+  A   GA A +V      ++           ++V
Sbjct: 16  DSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKDTGFEN----------QIIV 65

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            NT +FL   A  +  K    I+ +TG++GK+S    V  +             +S IS+
Sbjct: 66  PNTVEFLGQLAKTIVEKFKPKIIGITGSNGKTSTKEIVWSVL------------SSEISA 113

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F  +  L +   + L+   SY   + V  + +     G  ++         G   N+G  
Sbjct: 114 FKNEGNLNSEIGLPLSIINSY-RGESVLILEMAQRVVGDIEYLCKIFPPDIGVLLNVGSA 172

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+    + +  F  K ++ E        A++  DD       +R     CR       G 
Sbjct: 173 HVGVAGSVENIFKGKWQIVE----NSKEALVNFDD-------ERMRCTKCRYFGTT-GGD 220

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF---QVYNALVAAGLCIAIGIDSALV 332
           +I  K+    +N     ++ E +  +F + LPG +      +ALVA G  IA  ID    
Sbjct: 221 YILSKRE---YNGSSTILTFEYEGEEFYYQLPGYWTKPMALSALVAFG--IADMIDVLFN 275

Query: 333 LEHLEKLHVVPGRF 346
             +L     + GRF
Sbjct: 276 PLNLANYKPLKGRF 289


>gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
 gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
          Length = 455

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 141/341 (41%), Gaps = 35/341 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV---VSSAYSLQDFSATIRSN 89
           VS+D+R + AG +FVA+ G   D H F+ +   +G  A+V   +   Y L          
Sbjct: 26  VSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGVAAVVAERIPENYPL---------- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF-QIG 148
            P L+V +TR  L   A          ++ VTG++GK++V   +  I +    ++F + G
Sbjct: 76  -PALIVADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEMIATIFK----TAFGEDG 130

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             +T  +F  +N +  P  I+       + +   G+ HV   A    + Q  +       
Sbjct: 131 RLATSGNF--NNDIGVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIAQPTV------- 181

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N  R+H ++ QT  A       +    LP+   A+  AD+ YS    + A     R
Sbjct: 182 GLVNNAQREHQEFMQTVLAVAEENGTVIRS-LPENGTAVFPADEPYSDLWTRYAGARQIR 240

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              +G   K     K         V I  EGK +       G+  V NAL AA    + G
Sbjct: 241 TFGLGKDAKVSGQYK--NEDGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAACARSAG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           ID   +++ LE    V GR E    N+  G + +D  + +N
Sbjct: 299 IDWQTIVKGLEAFSPVHGRLE--KKNAFNGALLIDDTYNAN 337


>gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 426

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 55/369 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K   V +D+R    G +F+A+VG+  D H +I QA   GA AI+ + +         + S
Sbjct: 22  KFKGVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQMGAVAIIANKS---------VDS 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI----LAVTGTSGKSSVASFVQQICQRSGLSS 144
             PILVV++T+  LS  AS     H +NI    +A+TG++GK++  + +  I       S
Sbjct: 73  QLPILVVNDTQTALSTIASW----HLQNIKPIVIAITGSNGKTTTKNMLANIL------S 122

Query: 145 FQIGPTSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGI 202
            Q     T  +   +N L  P + + L K   Y +   G  H+             +  +
Sbjct: 123 LQAPTLKTQGNL--NNHLGVPMTLLTLEKQHQYAVIEMGANHLG-----------EISHL 169

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           + I      +  + +D H      F+  ++   E+  K S  II     ++ +V    H 
Sbjct: 170 RKIVNPDIAIVTNTLDAHIGTFGGFDNLVKAKGEIYSKNSKNIINTQSIFTGDVSFTPHG 229

Query: 263 AGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                 + G  +    ++ K    IH +Q+++I++          L G   + NAL A+ 
Sbjct: 230 NTKVSGNNGDIFASNIVNNKFDLNIH-QQKISITLN---------LIGIHNIDNALAASA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRT 378
               +GID  L+ + LE     PGR E + T  +  RI +D  + +N    I  LK ++ 
Sbjct: 280 CVYPLGIDINLIKQGLEATKAEPGRLEIIHT--KQFRI-IDDTYNANPYSTIIALKTLQN 336

Query: 379 ITSGRIIVV 387
            +  +IIV+
Sbjct: 337 FSGEKIIVL 345


>gi|300780833|ref|ZP_07090687.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
 gi|300532540|gb|EFK53601.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
          Length = 465

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 112/276 (40%), Gaps = 36/276 (13%)

Query: 122 GTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK+S  S      Q +G   SF IG         Q NR  T +         +  S 
Sbjct: 117 GTHGKTSTTSMAVVALQAAGEDPSFAIG--------GQLNRAGTNA---------HHGSG 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V     + S   L ++R D I +I    TN+  DH+DY    + Y+      F + +  
Sbjct: 160 AVFVAEADESDGSLLRYRPD-IAVI----TNIEPDHLDYFGDAETYYKV-FDDFADRITD 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--------NKQQVT 292
               I+  DD  + E   RA   G  V  VGY G   H     A H        +   V 
Sbjct: 214 TGTLIVCLDDESAAECGVRALERGVTV--VGY-GTMTHPSIPNAAHVVDWRTENDLSVVK 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +++ G +  +   +PG+  V N++ A    +  G D   + E L     V  RFE  G  
Sbjct: 271 VNLNGTEMTYHLSIPGKHMVLNSVAALVAGVTAGADPFALAEGLSGFTGVRRRFELRGEL 330

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           S G R+Y DYAH    ++ +LK  +  T  R++V F
Sbjct: 331 SDGTRVYDDYAHHPTEVDAVLKAAKG-TGARVVVCF 365


>gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
 gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
          Length = 440

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 157/363 (43%), Gaps = 32/363 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV+ D+R + AG +FVA+ G + DGH F   A+A GA A++VS           +   
Sbjct: 11  ITEVTIDTRQVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSK---------RLLVG 61

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G 
Sbjct: 62  APQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAG- 120

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    P+ L   L          + + A+  G   +  D  +  +   
Sbjct: 121 -----NFNNDIGV----PLTL---LRLTPEHDFAVIELGANHVGEIAYTTDLSRPESALV 168

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL   H++   +      AK  +F   LP    AII AD        +  HN   RV  
Sbjct: 169 NNLSAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSHDWPHWQETLHNK--RVWR 225

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIG 326
                          +    Q T  +    F   D   PLPG   + NAL AA L +++G
Sbjct: 226 FSPHAAEDIDFYASDVRITPQTTYFILHSPFGIVDIELPLPGRHNIANALAAAALAMSVG 285

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            D A V + L +L  VPGR   +      G++ +D ++ +N  S+    + +  +   R+
Sbjct: 286 ADLAAVRQGLTQLQAVPGRLFPI--QLAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRV 343

Query: 385 IVV 387
           +VV
Sbjct: 344 MVV 346


>gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 452

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|288870137|ref|ZP_06113069.2| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
 gi|288868258|gb|EFD00557.1| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
          Length = 463

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 143/347 (41%), Gaps = 64/347 (18%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAV 120
           IA G  A  +     +  ++A +  + P       +    L  + L G   K+ EN +AV
Sbjct: 61  IAYGQRAENIVDGIDVVVYTAAVHPDNPEFAAAMEKGLPMLSRAELLGQMMKNYENAVAV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSY 176
           +GT GK++  S + +I     L +    PT ++    +S   + R+  P  +++ +A  Y
Sbjct: 121 SGTHGKTTTTSMITEI-----LLAADADPTISVGGILNSIGGNIRVGGPE-LFVTEACEY 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +S      ++E                      N+  DH+D+ +          RLF E
Sbjct: 175 TNSFLSFFPTIEV-------------------ILNVEADHLDFFKDLDD-IRRSFRLFAE 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQ 290
            LPK+   +I +D     +  K      CRV++ G      Y+ + I   ++     +  
Sbjct: 215 KLPKDGILVINSD---ITDYEKITEGLPCRVITFGKEESSKYRAEQIRFDELA----RPV 267

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +SV+G+  D +   +PGE  VYN+L A  +C+ +GI     LE ++K     G ++F 
Sbjct: 268 FDLSVDGETVDTVALGVPGEHNVYNSLAAIAVCMELGIS----LEMIKK-----GLWKFT 318

Query: 350 GTNSR--------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           GTN R        G  I  DYAH    +   L         ++ VVF
Sbjct: 319 GTNRRFEKKGELGGITIIDDYAHHPQEISASLATALNYPHRKLWVVF 365


>gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
 gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
          Length = 463

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 140/348 (40%), Gaps = 41/348 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R IQ G ++V + G K +GH F+  AI +GA A++ +          T   + P+
Sbjct: 35  VSTDTRTIQQGNLYVPLKGAKFNGHAFVQDAIDKGASAVLWAET------EGTPPKDVPV 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSSF 145
           ++VD+T + L   A R   +    ++ +TG++GK++    +        ++ +  G  + 
Sbjct: 89  IIVDDTLRALQRLAHRYRKQLSVKVIGITGSNGKTTTKDMIAALLATTYKVQKTEGNLNN 148

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG   T+    +D  +                      V +  S+ G  +   +  +  
Sbjct: 149 HIGVPLTLLRLEEDTEMAV--------------------VEMGMSNFGEIELLSNIAEPD 188

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A   TN+G  H+    +++    AK+ +   L  K++   +Y  D     ++ R  +   
Sbjct: 189 AAVITNIGESHLQELGSREGIAQAKLEILSGL--KKNGLFVYHGD--EPLLVNRVPDLPL 244

Query: 266 --RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              VL  G      +  K   +          +  +  F  P+ G+  VYNAL A  +  
Sbjct: 245 PEHVLRFGQGSDNDYYPKAVHVQANGTTFTVHQAPNRSFFLPILGKHHVYNALAAIAVAR 304

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
              +    + E   +L V   R E + T  + G   ++ A+ +N   M
Sbjct: 305 FFHVSWEKIQEAFSQLQVTRMRMELIET--KKGWTIINDAYNANPTSM 350


>gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 452

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 159/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFEGENVDGHRFVSKALQDGAGAAFYQKGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC + ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCCVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9]
 gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9]
          Length = 452

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 163/381 (42%), Gaps = 34/381 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V +DSR I+AG +FVA+ G + D H F+   +A+GA   VV   + L           
Sbjct: 23  TRVVTDSRAIRAGDLFVALKGERFDAHDFVADVLARGAAGAVVRCDFDL--------PGA 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P++ V + R  L   A+    +    +  +TG++GK++V   ++      G+ +  +G  
Sbjct: 75  PLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGKTTVKEMLR------GMLAQWLGDE 128

Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIA 206
           + +++    +N +  P        L+ L  +     +V     +H  +   L G+ +   
Sbjct: 129 AVLATGGNFNNDIGMP--------LTLLGLRDTHRAAVIEMGMNHAGELTYLSGLARPTV 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R HI +  + +A   AK  +F   L  +  A+I  DD      +  A  AG R
Sbjct: 181 ALVNNALRAHIGHFGSVEAIAQAKAEIFAG-LAADGVAVINRDDPNRDLFVAAA--AGRR 237

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++  G     +H      + +  ++T+         + P+PG+  + NAL A  +  A+G
Sbjct: 238 IVEFGLAAGDVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANALAACAVASAMG 297

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRI 384
           +    ++  L+    VPGR  F    +  G   +D  + +N  + +   I  +   SGR 
Sbjct: 298 VPLPAMVAGLQAFAGVPGRLAF--RRAVSGLTVIDDTYNANP-DSVRAAIAVLAARSGRR 354

Query: 385 IVVFGCGGDRDQGKRPIMGKI 405
            +VFG  G+  +G   +  +I
Sbjct: 355 WLVFGDLGELGEGAPALHAEI 375


>gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942]
          Length = 455

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 137/321 (42%), Gaps = 44/321 (13%)

Query: 18  LSIFPMQWRE---RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           L   P+Q  E   R    +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V 
Sbjct: 14  LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73

Query: 75  SAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             Y    D +A       +L VDNT       A     +    ++ +TG+ GK++    +
Sbjct: 74  RDYQPPSDLAA-----GHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELI 128

Query: 134 QQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             +           GP   T +++  +N +  P  +       + ++  V  + +     
Sbjct: 129 AAMLAVR-------GPVLKTEANY--NNEIGVPKTVLQIDPDHHWAA--VLEMGMRGRGQ 177

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             +  R+    +     TN+G  HI    ++QA   AK  L  + L     AI+ AD+  
Sbjct: 178 IAELARIAQPNIAV--ITNVGTAHIGLLGSEQAIAEAKCELLAQ-LSGTGLAILNADNHR 234

Query: 253 SKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                +R +   CR   +     QG+ I L+           T+ VEG+ F    PLPG 
Sbjct: 235 LIATAQRLNLPRCRTYGLQNGDLQGQLIDLE-----------TLVVEGQRFR--LPLPGA 281

Query: 310 FQVYNALVAAGLCIA--IGID 328
               N L  AGL IA  +G+D
Sbjct: 282 HNALNFL--AGLAIAQELGLD 300


>gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 452

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
 gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
          Length = 453

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 160/373 (42%), Gaps = 43/373 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           ++I  VS+D+R I+ G +F+A+ G   +G+ ++ +A  +GA+ AIV      L +    +
Sbjct: 24  KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKGAKIAIVDEVKCDLNE----L 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  ++ V NTR+ L   A     K    ++ +TG++GK+S    V  +        ++
Sbjct: 80  KEDVALIKVQNTRRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T    +F  +N +  P        L  L       V++ E    GL Q     IK +
Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178

Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           A       G  TN+G  HI+  +T++    AKM +      K +  ++  +D +    + 
Sbjct: 179 AEIASPDFGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              NA  +++  G    F I  K +       + T+    K+ +F   +PGE  + N ++
Sbjct: 234 ALPNAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
              +   +G+    +   L+ +     R E +  +  G  I  D Y  +  +++  +  +
Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351

Query: 377 RTITSGRIIVVFG 389
           + I   R I V G
Sbjct: 352 KNIEGKRRIAVLG 364


>gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
 gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
          Length = 452

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNRIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLNTLTGRRILIL 360


>gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 471

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 151/370 (40%), Gaps = 43/370 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +FVA+ G + DGH ++     QGA  ++VS  +  ++ S         +V 
Sbjct: 34  DSREVKGGELFVALKGERTDGHCYVSNVFQQGASWVMVSREWYEKEGSPQPPEGKGFIVT 93

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+    L   AS         ++A+ G++GK++    V  +           G T  +S 
Sbjct: 94  DDPVSGLQQLASCYRKTFSIPVVAIGGSNGKTTTKEMVASV--------LATGFTVQMSQ 145

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGR 214
             ++N L  P  +     L      G+  V V   +H  +   L  I +   G  TN+G 
Sbjct: 146 GNRNNHLGVPLTL-----LQLRPDTGIAVVEV-GINHPGEMEELTAIARPTHGLLTNIGH 199

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE---------VMKRAHNAG- 264
           +H+++         A+ +LF  L      A +  DD+  +          +   A   G 
Sbjct: 200 EHLEFLIDLDGVAAAETQLFTYLQESGGTAFVNGDDSRLRAAGEALEGPVIYGTADLPGR 259

Query: 265 -CRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            CR   +SV   G+   +  +C+    + VT++  GK             V NA+ AA +
Sbjct: 260 ICRARDISVCRDGRISFV--LCSADRTEPVTLNFTGK-----------HNVINAVAAAAV 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
            +  G+  + + E LE L   PG       +S G RI  D Y   S+S+ + +  +  + 
Sbjct: 307 GLHFGLPLSRIREGLESLVPAPGWKRLEVMDSGGLRILNDTYNANSDSMRLAIDALCDLP 366

Query: 380 TSGRIIVVFG 389
             G+ I V G
Sbjct: 367 CEGKRIAVLG 376


>gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis N1568]
          Length = 445

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
 gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
          Length = 445

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O46]
          Length = 452

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNGTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 454

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 47/376 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ + KI+ VS DSR+I    +FV   G   DGH F+ QA+  GA A     A+   D  
Sbjct: 20  QYLQHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQALEDGAGA-----AFYQNDAK 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                  PI+ VD+T   L   A + Y KH    ++AVTG++GK++    ++ + +    
Sbjct: 75  PDHEIEGPIIWVDDTLLALQELA-KAYLKHVNPKVIAVTGSNGKTTTKDMIESVLK---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
            +F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 PAFKVKKTQG----NYNNEIGMP--------LTILQLDEDTEISILEMGMSGF--HEIEL 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           +  IA       TN+G  H+    +++    AK  +   L P      IY  D    E +
Sbjct: 176 LSEIAHPDIAVITNIGESHMQDLGSREGIARAKFEIVSGLKP--GGVFIYDGD----EPL 229

Query: 258 KRAHNAGCR---VLSVGY-QGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQ 311
            + H    +    +S+G  Q   +    VC++  H+   +  ++   +  +  P+ G   
Sbjct: 230 LKPHVDTLKDTEAISIGLAQDNSV----VCSVEQHDAMGIAFTLNTNEH-YQIPILGTHN 284

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NA +A  +   +G+    + E++ K+ +   R E   T+S    I   Y  +  S++ 
Sbjct: 285 MRNAAIAISIGKILGLSYEEIQENISKVKLTGMRMELHRTDSNISVINDAYNASPTSMKA 344

Query: 372 ILKNIRTITSGRIIVV 387
            +  +  +   +I+++
Sbjct: 345 AIDTLAAMDGRKILIL 360


>gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
 gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
          Length = 456

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 148/372 (39%), Gaps = 43/372 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I  VS+DSR +  G +F+ + G + +GH+F  QA  +G  A++ + +           
Sbjct: 25  RLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEGVAAVLWNRS------EPNPP 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRS 140
              P+++VD+T + L   A     +    ++ VTG++GK++    +        ++ +  
Sbjct: 79  EGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKDMIHAVLGTEYKVHKTE 138

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  +  IG   TI +  +D  +        AK  + +L+      ++V            
Sbjct: 139 GNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARPDIAV------------ 186

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+G  H+    +++    AK+ +    L KE   I   D+    E   R
Sbjct: 187 ---------ITNIGESHLLELGSREGIAEAKLEIVNG-LSKEGTLIYVGDEPLLTE---R 233

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            +       + G    F   L+ +     ++     V G +  F  P+ G+  V NAL A
Sbjct: 234 LNQPPYDTKTFGEDPAFDYQLEDMT--QTEEGTAFRVRGIENGFFIPVLGKHNVKNALAA 291

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 + +  A + E L KL V   R E V T      I   Y  +  S++  ++ +  
Sbjct: 292 IAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQ 351

Query: 379 ITS-GRIIVVFG 389
           +   G+ I+V G
Sbjct: 352 MKGYGKKILVLG 363


>gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Weissella cibaria
           KACC 11862]
          Length = 454

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 167/399 (41%), Gaps = 51/399 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           + LQ++      E+IN   +         +   + DSR  +AG +FV +V    DGH ++
Sbjct: 3   LTLQEMATAINAEIINAADV--------AVTSTTFDSRKAEAGSLFVPLVA-ANDGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA   +  + +        + ++ P LVV +T       A     +    ++A+
Sbjct: 54  ASAVANGATVTLWQADHP------NVPTDVPTLVVADTLVAFQQLAVYYLKQVQPKVVAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G++GK++   FV  I    G S+F+     T ++F  +N +  P+ I        LS  
Sbjct: 108 SGSNGKTTTKDFVAAI----GASTFKT--VKTPANF--NNEIGVPTTI--------LSMP 151

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             T + V     G+D  R   +  ++          T +G  HI++ +T++   + KM +
Sbjct: 152 ADTELLV--IEFGMD--RPGDLTFLSEMVHPDIAVLTMIGEAHIEFFKTRERIADGKMEI 207

Query: 234 FEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              L P     ++Y  D+   +E  +   +A     + G            A+ N    T
Sbjct: 208 IAGLQPNG--VLVYNGDEPLLRE--RAGQHAFLHTATFGLNPDNDLYASTIAM-NPVGAT 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +     +  PL G + V NAL A  + I +GI    + + L +  +   R E++  N
Sbjct: 263 FQTDKSAMTYHIPLTGRYNVSNALAAISVGILLGISDDKIAQALAEAPITENRTEWLAGN 322

Query: 353 SRGGRIYVDY--AHTSNSLEMILKNIRTITSGRIIVVFG 389
             GG+I  D   ++ + + E++     T  +GR I V G
Sbjct: 323 -FGGKILSDVYNSNPTAAKEVLHFFAETPVTGRRIAVLG 360


>gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580]
 gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580]
          Length = 491

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 148/372 (39%), Gaps = 43/372 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I  VS+DSR +  G +F+ + G + +GH+F  QA  +G  A++ + +           
Sbjct: 60  RLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEGVAAVLWNRS------EPNPP 113

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRS 140
              P+++VD+T + L   A     +    ++ VTG++GK++    +        ++ +  
Sbjct: 114 EGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKDMIHAVLGTEYKVHKTE 173

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  +  IG   TI +  +D  +        AK  + +L+      ++V            
Sbjct: 174 GNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARPDIAV------------ 221

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+G  H+    +++    AK+ +    L KE   I   D+    E   R
Sbjct: 222 ---------ITNIGESHLLELGSREGIAEAKLEIVNG-LSKEGTLIYVGDEPLLTE---R 268

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            +       + G    F   L+ +     ++     V G +  F  P+ G+  V NAL A
Sbjct: 269 LNQPPYDTKTFGEDPAFDYQLEDMT--QTEEGTAFRVRGIENGFFIPVLGKHNVKNALAA 326

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 + +  A + E L KL V   R E V T      I   Y  +  S++  ++ +  
Sbjct: 327 IAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQ 386

Query: 379 ITS-GRIIVVFG 389
           +   G+ I+V G
Sbjct: 387 MKGYGKKILVLG 398


>gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
 gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
          Length = 452

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A       S+ +  
Sbjct: 20  QFLNQEINGVTIDSRSISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTSIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDDDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +    NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VNEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           8013]
          Length = 445

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -KKNGVVFIDDSKGTN 330


>gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 452

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +        TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLTQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+K+ +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKKVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLGTLTGRRILIL 360


>gi|297621605|ref|YP_003709742.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297376906|gb|ADI38736.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 447

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 157/377 (41%), Gaps = 61/377 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           +++LAV GT GK++ +S +  + +  G S SF IG    +++F  + +    S  ++A+A
Sbjct: 102 KDVLAVGGTHGKTTSSSLLAWVLEVCGFSPSFAIG--GIVANFKANGKAGEGS-CFVAEA 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                         + S   L ++R  G  +     TN+G DH+D+HQT++   N   R 
Sbjct: 159 --------------DESDGTLARYRSFGAIV-----TNIGLDHMDHHQTEERLLNC-FRT 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-- 291
           F   +  E+      DD       KR      + +S G+     H      + + +QV  
Sbjct: 199 FFSKVQNEAFCFWCGDD-------KRLQTLNPKGVSYGF-----HENNRLRVDHFRQVGW 246

Query: 292 ----TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                +  +GK F D    L GE    NA    GL + +G   + + E L+    V  R 
Sbjct: 247 TSIFDVVFDGKRFADIEVLLAGEHHALNAAAVFGLSLRLGAQESKIREALKTFKGVARRC 306

Query: 347 EFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGK 404
           E  G   + G +++ DYAH    +   LK IR  +   RI+ VF     R    R  MG 
Sbjct: 307 EVKG--EKNGILFLDDYAHHPTEIRATLKAIRQASPDRRIVAVF--QPHRYTRTRDCMGM 362

Query: 405 IALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-------- 454
                  AD  IVTD +   E P     E+ H I   +EK + ++      E        
Sbjct: 363 YGSTFHSADQVIVTDIHAAGESPIP-GVEVCH-ILSELEKNSSVKCRYLPREDLSCKLSK 420

Query: 455 MLNKQDVLVVAGKGHET 471
            L K DV+V  G G+ T
Sbjct: 421 FLEKGDVVVTLGAGNIT 437


>gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 460

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 156/383 (40%), Gaps = 45/383 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +++D+R I    +F+A++G   D H+F+ +AI++GA A+++      Q +   +   
Sbjct: 30  IHSITTDTRKITPKCLFIALIGKNFDAHMFVNEAISKGAAALLLEK----QCYPKNV--- 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V NT   L   AS +  +    ++A+TG+SGK+SV      I +  G        
Sbjct: 83  IPQIIVQNTTIALGKIASWIRDQTNATVIAITGSSGKTSVKEMTSSILKNCG-------- 134

Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +TIS+F   +N +  P  +     L+   S     + + A+     ++     K     
Sbjct: 135 -NTISTFQNLNNNIGVPLTL-----LNLNKSHKYAILELGANYPKDIEYTTKITKPNIAL 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H+   ++      AK  +F   L K   AI   D  Y  +  K          
Sbjct: 189 INNIYHSHLAGFKSLFGVAQAKQEIFLG-LRKNGIAIYNKDSNYWSKWKKNLLTQKIINF 247

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYNALVAA 319
           S+         KK   I     +T S +G  F             PL G   + NAL AA
Sbjct: 248 SI---------KKNSTIF-ASNITTSNQGSKFKIHSPNGEIYVTLPLLGYHNISNALAAA 297

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + I+I I   ++   L  L ++  R + +  N     I   Y   + S+ + +K +  I
Sbjct: 298 TIAISINIPLEIIKIGLSSLPILKNRLQIIRLNKYKTIINDTYNANTASMIVAIKILENI 357

Query: 380 TSGRIIVVFGCGGDRDQGKRPIM 402
           +  ++   F  G   + GK  ++
Sbjct: 358 SGYKL---FVAGDMLELGKNDVL 377


>gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 329

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 125/295 (42%), Gaps = 23/295 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R +QAG +FVA+ G K DG  F   A+  GA A+++    S        R+   +
Sbjct: 31  ITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRTPGAV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T       A     K    ++AVTG++GK++            G          T
Sbjct: 91  IGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVC------RT 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGV-THVSVEASSHGLDQHRLDGIKL--IAGSF 209
            +++  +N +  P        L+ L   G  T   VE    G  Q            G  
Sbjct: 145 AANY--NNEIGLP--------LTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H++   + +    AK  L E + P     I+ ADDA    +  +A + G R+L+
Sbjct: 195 TNVGETHMELLGSIENIARAKSELVEAIAPG-GIVILNADDARVAAMRAQAAD-GVRILT 252

Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLC 322
            G + K  I  + + +  N+ +  ++  G+  D+  PL G   VYN   A  GLC
Sbjct: 253 YGIRAKADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNTRGACGGLC 307


>gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
 gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
          Length = 463

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 158/367 (43%), Gaps = 40/367 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV       + S      
Sbjct: 23  LGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVV------DEVSVPTADC 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V +T + L   A+         ++A+TG++GK++    +     + G   +    
Sbjct: 77  GPLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYY---- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
                + A  N L    P+Y A       ++    V +E   +   +  +D +  IA   
Sbjct: 133 -----NEANYNNLIG-MPLYAANL-----TEDAEFVVLEMGMNSPGE--VDALSRIARPD 179

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   
Sbjct: 180 VAVITNVGPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCA 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           R++S G     + +     I  +++    VT    G++  +          Y+  + A +
Sbjct: 239 RIISFG-----VGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAV 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI--LKNIRT 378
             A  ID       +E+   + GR +   T  +G  I  +D A+ +N L M+  ++N+  
Sbjct: 294 GHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSN 353

Query: 379 ITSGRII 385
           +   R++
Sbjct: 354 LNHARVL 360


>gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
 gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
          Length = 457

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 147/371 (39%), Gaps = 39/371 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++EVS+DSR I    +F+A+ G + D H F P  +  GA A++V     +         +
Sbjct: 30  LSEVSTDSRQIGQDCLFIALKGERFDAHDFAPSVVENGAVALLVERELDV---------D 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V NTR  +   A+ +  +    ++ +TG+SGK+SV      I  + G + +  G 
Sbjct: 81  CPQVIVANTRLSMGQLAAWVRKQSQAKVVGLTGSSGKTSVKEMTASILSQRGKTLYTAGN 140

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                    +N +  P  ++ L     Y +   G  H +  A +  +       +K  + 
Sbjct: 141 L--------NNDIGVPLTLFRLTHEYDYAVIEMGANHPNEIAYTTNI-------VKPESA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NL   H+    + +    AK  +++  LP E  AI+  D        +         
Sbjct: 186 LVNNLFAAHLAGFGSPEGVARAKGEIYQG-LPDEGTAIVNLDSYSPHWQFQPRQTVWYYS 244

Query: 268 LSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           L    +  F    I +K++         T+           PLPG   + N L A+ L I
Sbjct: 245 LKPQDKADFYPSDIEVKQL-----STNFTLHTPVGQIAITLPLPGMHNIANVLAASALAI 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSG 382
           ++G     +   L     VPGR   V  +    ++ +D  + +N   MI   N+     G
Sbjct: 300 SVGATLEDIRNGLATTKAVPGRLYPVQLSPT--KVVLDDTYNANDGSMIAAINVLAKMPG 357

Query: 383 RIIVVFGCGGD 393
             I++ G  G+
Sbjct: 358 YRILIAGDMGE 368


>gi|168213683|ref|ZP_02639308.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969]
 gi|170714862|gb|EDT27044.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969]
          Length = 874

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 172/405 (42%), Gaps = 35/405 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +     L  F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH  
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ID     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 I--HLKKVCAIHNKQQVTISVEGKDFDFL--------FPLPGEFQ--VYNALVAAGLCIA 324
           +  +LK    I   +  TI V+ +  ++         F + G+ +  + NA+ A    + 
Sbjct: 637 LQENLKHGNPIVFYRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +D  ++ + L++         GRF     N  G  + +DY H  +  ++++ +++ + 
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GINVILDYGHNIDGYKVVIDSLKNLG 754

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              I  + G  GDRD      +G+I+ D  D I I  D + R +D  ++ + I  G+   
Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             K   +       EA+R  +++  K + +++  + +E+++ + N
Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859


>gi|256379761|ref|YP_003103421.1| UDP-N-acetylmuramate--L-alanine ligase [Actinosynnema mirum DSM
           43827]
 gi|255924064|gb|ACU39575.1| UDP-N-acetylmuramate/alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 466

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 101/226 (44%), Gaps = 16/226 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D+H T +AY    + +F+E L +  P    I  ADD  S  +  RA   G R
Sbjct: 183 TNVEADHLDHHGTVEAY----VAVFDEFLERIEPGGVLIACADDEGSAALADRAEKRGIR 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           V   G +        V   H          + ++G+  D    +PGE    NA+ A    
Sbjct: 239 VRRYG-RAATGEGAAVLVEHRPDGAGGLAVVELDGERLDVRVAVPGEHMAGNAVAALLAA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
           + +G D   VLE L     V  RFEF G  + G R+Y DYAH    +   LK  R +   
Sbjct: 298 VELGADRWGVLEGLAAFGGVRRRFEFKGVAA-GVRVYDDYAHHPTEVAAQLKAARPVAGD 356

Query: 382 GRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           GR++VVF      R +      GK AL LAD  +V D     EDPE
Sbjct: 357 GRLVVVFQPHLYSRTKTFAAEFGK-ALALADEVVVLDVYGAREDPE 401


>gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Staphylococcus aureus 04-02981]
 gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 452

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLGTLTGRRILIL 360


>gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O11]
          Length = 452

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ +++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWIEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|110801078|ref|YP_696891.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124]
 gi|110675725|gb|ABG84712.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124]
          Length = 874

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 172/405 (42%), Gaps = 35/405 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +     L  F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH  
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ID     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 I--HLKKVCAIHNKQQVTISVEGKDFDFL--------FPLPGEFQ--VYNALVAAGLCIA 324
           +  +LK    I   +  TI V+ +  ++         F + G+ +  + NA+ A    + 
Sbjct: 637 LQENLKHGNPIVFYRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +D  ++ + L++         GRF     N  G  + +DY H  +  ++++ +++ + 
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GINVILDYGHNIDGYKVVIDSLKNLG 754

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              I  + G  GDRD      +G+I+ D  D I I  D + R +D  ++ + I  G+   
Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             K   +       EA+R  +++  K + +++  + +E+++ + N
Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859


>gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
 gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
          Length = 458

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 140/339 (41%), Gaps = 39/339 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQHRLD 200
            F++  T    +F  +N +  P        L+ L+ +  T V+V     SS G  +    
Sbjct: 131 KFKVQKTE--GNF--NNHIGLP--------LTILNLEETTEVAVLEMGMSSRGEIEFLSK 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +  A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D          
Sbjct: 179 LARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPE 236

Query: 261 HNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            N     ++ G      Y    + L +    H K         ++  F  P+ G+  VYN
Sbjct: 237 MNLATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            L +  +    G+    + E L  L +   R E V TNS
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 452

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + P++ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPVIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNTL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
 gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
          Length = 477

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 142/337 (42%), Gaps = 20/337 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  ++  P+      I  +S DSR IQ G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DLVAAMTGRPVGTMPPGITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIAVANGAALMV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+ A       A  R   P++VVD+  + L   A     +    I+AVTG+ GK++    
Sbjct: 69  VNEA----KLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++Q+   SG         + ++SF  +N      P+ LA+ +   +  GV  + +  S  
Sbjct: 125 LRQVLAPSGEVH------AAVASF--NNHWGV--PLTLAR-MPATAQYGVFEIGMNHS-- 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G     +  ++      T +   H+    +     +AK  +F  +       ++  D+ Y
Sbjct: 172 GEITPLVQMVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVA-ANGGVLLNHDNPY 230

Query: 253 SKEVMKRAHNAG-CRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            + +  +A  AG   + S G   K    L +             ++G+  + +   PG  
Sbjct: 231 FEYLEHKAQEAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIAAPGRH 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              NA+ A G    +G D    ++ L +L  V GR E
Sbjct: 291 IAENAMAALGAARLLGADLDGAVDALSRLSPVKGRGE 327


>gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
 gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
          Length = 454

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 141/334 (42%), Gaps = 48/334 (14%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PE  N L+IF     E+ +  +++DSR I  G IFVA+ G   DG+ F   A+ +GA 
Sbjct: 15  ELPE-TNLLAIF----SEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTEIAVEKGAI 69

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AI+V      ++       N P  +V +T       A     +    ++AVTG+ GK++ 
Sbjct: 70  AIIVD-----REVPVIASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVTGSVGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSY------LSSQGV 182
              +  +  + G          T +++  +N +  P  +  L K+  Y      + ++G 
Sbjct: 125 KELIAAVLSQRGKVH------KTRANY--NNEIGVPKTLLELDKSHDYAVIEMAMRAKGE 176

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +  E +   L            G  TN+G  HI    + +A   AK  L E++ P ++
Sbjct: 177 IALLTEIARPTL------------GIITNVGTAHIGRLGSTEAIAAAKCELLEQMSP-DT 223

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+  D+    E   +        L+ G +G  +    V  + + Q  T+ VEG   +F
Sbjct: 224 IAILNHDNPLLIETAHKVWQG--ETLTYGLEGGDL----VGQLIDAQ--TLRVEG--INF 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             P+PG     N L A  +   + +D   + E L
Sbjct: 274 PLPIPGRHNALNYLAALAVAKVLNLDWTPLTEGL 307


>gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ED133]
          Length = 452

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFINQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
 gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
          Length = 452

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 9/123 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R IN VS+D+R+I+ G +FVA+VG + D H F  QA+  GA A++VS   S       
Sbjct: 20  NDRVINSVSTDTRNIEQGALFVALVGERFDAHHFTHQAVDSGAGALLVSKPVS------- 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              + P LVV +T+  L    + ++       +A+TG+ GK++V   +  I ++ G   F
Sbjct: 73  --GDVPQLVVKDTKLALGQLGALVHQTCLTPTVAITGSCGKTTVKEMIASIMEQKGQVLF 130

Query: 146 QIG 148
             G
Sbjct: 131 TAG 133


>gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
          Length = 452

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + P++ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPVIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
 gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
          Length = 476

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 158/367 (43%), Gaps = 40/367 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV       + S      
Sbjct: 36  LGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVV------DEVSVPTADC 89

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V +T + L   A+         ++A+TG++GK++    +     + G   +    
Sbjct: 90  GPLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYY---- 145

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
                + A  N L    P+Y A       ++    V +E   +   +  +D +  IA   
Sbjct: 146 -----NEANYNNLIG-MPLYAANL-----TEDAEFVVLEMGMNSPGE--VDALSRIARPD 192

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   
Sbjct: 193 VAVITNVGPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCA 251

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           R++S G     + +     I  +++    VT    G++  +          Y+  + A +
Sbjct: 252 RIISFG-----VGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAV 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI--LKNIRT 378
             A  ID       +E+   + GR +   T  +G  I  +D A+ +N L M+  ++N+  
Sbjct: 307 GHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSN 366

Query: 379 ITSGRII 385
           +   R++
Sbjct: 367 LNHARVL 373


>gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
 gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
          Length = 468

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 31  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 84

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 85  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 140

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 141 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 192 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPGMNL 249

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 250 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 303

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 304 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 339


>gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 459

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 167/373 (44%), Gaps = 37/373 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW E +++ V+ DSR ++ G +FV + G + DGH F+  A   GA A + ++  S +D  
Sbjct: 20  QWSEIEVSGVAFDSRKLKNGDLFVPLQGAR-DGHEFVATAFQNGASATLWAADRSYED-- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P +VVD+    L         K    ++AV+G++GK++    +  I       
Sbjct: 77  ----DGYPRIVVDDPLAALQQLGKYYLHKINPLVVAVSGSNGKTTTKDMIASIL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
           S Q+  T T ++F  +N +  P  +     L+  S+     V +  S  G     LD + 
Sbjct: 127 STQMNVTKTYANF--NNAIGVPVTL-----LNMESNTEAVVVEMGMSHFG----ELDELS 175

Query: 203 KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           KL+       T +G  HI++  ++    +AKM +   L  +E    +Y  D     + +R
Sbjct: 176 KLVTPDIAVLTMIGEAHIEFFGSRDRIADAKMEITHGL--REDGTFVYNGD--EPLLRER 231

Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A +      + G Q    I+   V    +  +  +++   D +F  P+ GE+ V NA+ A
Sbjct: 232 AKDLKQGQKTFGRQLDNDIYATSVEQSDHDLRFKVNL-WPDEEFTIPMIGEYNVNNAMAA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             +   + +  + +   L  + +   R E++ T  +G +I  D Y     +++ +L+ + 
Sbjct: 291 MMVGHLLHVTPSHLKIGLANVELTENRAEWL-TGQQGEKILSDVYNSNPTAVKEVLETLN 349

Query: 378 TI-TSGRIIVVFG 389
            +  +GR ++V G
Sbjct: 350 ELPETGRRLIVLG 362


>gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL S4-171]
          Length = 309

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 136/325 (41%), Gaps = 54/325 (16%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  V  D+R I+ G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 17  SIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATF------ 70

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            Q       ++ P+++V++T   L   A +   +    ++A+TG++GK++    +  I +
Sbjct: 71  WQKNVPNPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGKTTTKDIMAAIVE 130

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            S       G  +  IG   TI +  +D  +              +   G+ H       
Sbjct: 131 TSYKVHYTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH------- 170

Query: 192 HGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
               +H ++ +  IA       TN+G  HI+Y  ++Q    AK+ +   L P  S  +IY
Sbjct: 171 ----RHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNP--SGILIY 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFL 303
               Y + ++    +   R L+ G   + +   L+    IH + + T  V     D +  
Sbjct: 225 ---PYEETLLLSQIDGDFRQLTFGKSTESEIYPLE----IHAEAEGTSFVTNWEPDLEIF 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGID 328
            P+ GE  V+N + A      IGI+
Sbjct: 278 VPIIGEHNVFNTMAAMLAAREIGIE 302


>gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
 gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
          Length = 452

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTVLELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
 gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
          Length = 449

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ VS+DSRHI    +FVA++G + D H FIP    QGA A++VS           + +
Sbjct: 20  QISSVSTDSRHIDEQGLFVALIGERFDAHDFIPAVQEQGATALLVSK---------EVDT 70

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             P ++V +T+K L L A  ++        A+TG+ GK++V   +  I  RSG
Sbjct: 71  TLPQVIVSDTQKALGLIAKHVHQVCHTFTFALTGSCGKTTVKEMLASILTRSG 123


>gi|310829359|ref|YP_003961716.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
 gi|308741093|gb|ADO38753.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
          Length = 471

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 124/331 (37%), Gaps = 53/331 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV SA   +D    +R+    L +     +L L +        +  + V GT GK++ +
Sbjct: 76  MVVYSAAIHEDNPDMVRAKDLDLPIVERSDYLGLLSLAF-----DKTIGVAGTHGKTTTS 130

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S +  +   +        P+ +I     +   N     S  ++ ++  Y+ S        
Sbjct: 131 SMIAALLHYADFD-----PSVSIGGKLPEIGGNACLGDSDYFVIESCEYVDS-------F 178

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +SH +            G  TN+  DH+DY              F  +LP +   I Y
Sbjct: 179 LKTSHYI------------GIITNIEEDHLDYFTEGLPQIKESFHKFGAILPPDGLMIAY 226

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------ 301
            D   S++V+    N  C V + G++ K          HN Q   +      FD      
Sbjct: 227 GD---SQDVLDTVENLRCPVTTYGFEKK-----NDWTAHNIQYDDMG--NPSFDAYHHNE 276

Query: 302 ----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PGE  V NAL        +GID A V + L+  H    RFEF G    G  
Sbjct: 277 FYGHFNMKIPGEHNVLNALSCIACSEFLGIDEATVQKTLDNFHGAKRRFEFRG-EVNGIN 335

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +Y DYAH    L++++          + V+F
Sbjct: 336 VYEDYAHHPTELKVVIDACLNHAHNNLWVIF 366


>gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
 gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
          Length = 453

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 157/389 (40%), Gaps = 65/389 (16%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S++P    +R  N+V  DSR I  G +FV + G + DGH FIP A   G   +V  S
Sbjct: 16  NDISLYP----DRAFNKVEFDSRLITEGDLFVPLKGAR-DGHDFIPVAFENGC--VVTLS 68

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             SL         + P ++V++    L   A+    K    ++AVTG++GK++    +  
Sbjct: 69  EVSL---------DVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKDMIHD 119

Query: 136 IC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +        +  G  + +IG   T+     D                 +   G  H+   
Sbjct: 120 VLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG-- 164

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKES---PA 244
                 D H L  I   + S   L G  H+++  +++     K+++ + + P      PA
Sbjct: 165 ------DIHLLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
              AD      V          ++  G Q     L+    + +K  +T +V   D D   
Sbjct: 219 YPIADKLLPSHV---------DLIRFGEQAD---LQVTSLVESKDSLTFTVNFMDGDIFL 266

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
           P+ G++   NA+VA+ +   +G+ +  +   L  L++   R E+    + G  I  D Y 
Sbjct: 267 PVTGKYNATNAMVASYVGKTLGVSNEAIKSALASLNLTRNRTEW-KKAANGADILSDVYN 325

Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFG 389
               ++ +IL+   +I +   G+ I V  
Sbjct: 326 ANPTAMRLILETFSSIPANEGGKKIAVLA 354


>gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL N1-067]
          Length = 316

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 140/336 (41%), Gaps = 54/336 (16%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  V  D+R I+ G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 17  SIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATF------ 70

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            Q       ++ P+++V++T   L   A +   +    ++A+TG++GK++    +  I +
Sbjct: 71  WQKNVPNPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGKTTTKDIMAAIVE 130

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            S       G  +  IG   TI +  +D  +              +   G+ H       
Sbjct: 131 TSYKVHYTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH------- 170

Query: 192 HGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
               +H ++ +  IA       TN+G  HI+Y  ++Q    AK+ +   L P  S  +IY
Sbjct: 171 ----RHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNP--SGILIY 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFL 303
               Y + ++    +   R L+ G   + +   L+    IH + + T  V     D +  
Sbjct: 225 ---PYEETLLLSQIDGDFRQLTFGKSTESEIYPLE----IHAEAEGTSFVTNWEPDLEIF 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            P+ GE  V+N + A      IGI+   +   L+ +
Sbjct: 278 VPIIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNM 313


>gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
          Length = 464

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 39/349 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R++  G ++VA+ G + DGH F   A A+GA A++V     ++         
Sbjct: 24  IDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQARGASALLVERLLPIE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V ++   L+  A+ +       + A+TG++GK+SV S +  I Q+    + ++  
Sbjct: 75  LPQVLVADSELALAKIATGMQRDRDTEVFAITGSNGKTSVKSLLLSILQQVARHAHKV-- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               +   ++N +  P  +  A               + A   G   +  D  +      
Sbjct: 133 -VYANPGNRNNEIGLPLAVIDAP-----EDADYAVYEMGAGKPGDIAYLTDIARPRYALV 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRV 267
            N+   H++   +       K  ++   LP +  A+I  DDAY +   +      A CRV
Sbjct: 187 NNIAPAHLERMGSLLGVAVTKGAIYAA-LPADGVAVINVDDAYGRWFEQHFVGTPARCRV 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
           L  G +    H   V A    + +    +G  F  + P         LPG   V NAL A
Sbjct: 246 LRYGLE----HTADVTA----RDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAA 297

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           A L +A GI+ ALV   L     VPGR   +      G + VD ++ +N
Sbjct: 298 ASLALAAGIELALVAAGLADAQPVPGR--QIAHQLHNGAVLVDDSYNAN 344


>gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
 gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
          Length = 467

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 40/291 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R +Q G  F+A+ G + DGH F+ QAIAQGA   +V +     DF+A    N P+
Sbjct: 33  ITTDTRTLQPGEAFLALRGERFDGHHFVEQAIAQGAVCAIVDA-----DFTAD-NPNLPL 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V ++       A     +    I+ VTG+ GK++    +  +    G          T
Sbjct: 87  LTVQDSLAAYQTIARWWREQFTIPIIGVTGSVGKTTTKELIAAVLGTQG------NVHKT 140

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSH--GLDQHRLDGIKLIAG 207
            +++  +N +  P      K L  L+S     V  +++ A      L Q     I LI  
Sbjct: 141 QANY--NNEIGVP------KTLLQLNSHHNYAVIEMAMRARGEIALLTQIARPTIGLI-- 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI    ++QA   AK  L  E +P+ S A++  D  + + +   A       
Sbjct: 191 --TNVGTAHIGRLGSEQAIAEAKCELLAE-MPQNSVAVLNCD--HHRLMDTAATVWSGET 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           L+ G +G  +  + + A H     T+ VEG   D   PLPG     N L A
Sbjct: 246 LTYGLEGGDLQGELIDA-H-----TLRVEG--LDLPLPLPGYHNASNFLAA 288


>gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 452

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 453

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 174/404 (43%), Gaps = 36/404 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQD 81
           ++  E    ++S+D+R I    +F+A+ GN  +G+ ++ +AI  GA  AI+    + L++
Sbjct: 18  IKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGATVAIIDEVNFKLEE 77

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            +        ++ V++++  L   A     K    ++ +TG++GK+S    V        
Sbjct: 78  LNGK----GTVIKVNDSKTALGALAKYYREKLGIKVVGITGSTGKTSTKDLV-------- 125

Query: 142 LSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRL 199
            ++F  G  S   +    +N +  P  I+       L S     V +E  ++  ++ HRL
Sbjct: 126 -AAFLSGKYSVFKTKGNFNNEIGLPLMIF------ELDSSYDIAV-LEMGTNNFNEIHRL 177

Query: 200 DGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             I +      TN+G  HI+Y +T++     K  + +      +  + Y +D     + K
Sbjct: 178 ANIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLVVNYENDM----LQK 233

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNAL 316
              +   ++  +GY  K+ ++ + +           ++  G+   F   + GE  + NAL
Sbjct: 234 VNESNEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNAL 293

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
           +   +    GI    +   L        R EF+  N+    I  D Y  + +S++  L  
Sbjct: 294 LGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNF--TIINDCYNASPDSMKSALSV 351

Query: 376 IRTITSGRIIVVFG-CG--GDRDQGKRPIMGKIALDLADIAIVT 416
           ++T +  R I V G  G  G+  +    ++G+ A+  ADI + T
Sbjct: 352 LKTYSGSRKIAVLGDMGELGEHAKSSHEMVGQDAIGKADIVLTT 395


>gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
 gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
          Length = 458

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPGMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|323144062|ref|ZP_08078706.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
 gi|322416175|gb|EFY06865.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
          Length = 461

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 165/368 (44%), Gaps = 35/368 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V++DSR+   G +F+A+ G K D H F+ +A+  GA A+ VS      +FS     
Sbjct: 23  EVASVTTDSRNCPPGSLFIALKGEKFDAHDFLEKAVLSGAAALGVSLG---GNFS----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P +   +T + L L    +  K P  I AVTG+ GK++V      I ++        G
Sbjct: 75  -VPCVKCADTLRLLGLAGLLVREKCPAKIGAVTGSCGKTTVKEMAYSILKQ--------G 125

Query: 149 PTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIA 206
             +  ++   +N +  P + + L + L Y        +  + +SH  D  R  + ++  A
Sbjct: 126 FNAMCTNGNFNNDVGVPLTLLRLDEKLDYA-------IIEQGASHKEDIKRTSEFVQADA 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA--G 264
              TN+G+ HI+   +    +  K  + + +L +    I+ +   +  E  K    A   
Sbjct: 179 AVITNVGQAHIEGFGSAYGVYKGKSEILDSVLARGGIGIVPSCSQWIDEWKKDYKEAFLQ 238

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            ++L+ GY    F+ + +V +   +    ++ +G+       L G+    NA  AA LC+
Sbjct: 239 GKMLTFGYNDDDFVKVSEVKSSSQEVSFILTAKGQSEQIKLNLLGKHNAQNAAAAAALCL 298

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
           A+G D   +   LE    V GR +     +  G   +D A+ + S   +L  I T++S  
Sbjct: 299 ALGCDFKYIKPGLENTSSVKGRLQ---VKNFAGFTLIDDAYNA-SFNAVLSGIDTLSSFA 354

Query: 382 GRIIVVFG 389
           G  ++VFG
Sbjct: 355 GFKVMVFG 362


>gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103]
 gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103]
          Length = 452

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N+V++D+R + AG +FVAIVG + D H F   AIA+GA+A++VS    +         +
Sbjct: 24  LNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGAKALLVSKHLPV---------S 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P +VV +TR      A+ +  +    ++A+TG+SGK+SV      I ++ G
Sbjct: 75  VPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTASILRQCG 126


>gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
 gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
          Length = 452

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ VS+DSRHI    +FVA++G + D H FIP    QGA A++VS           + +
Sbjct: 23  QISSVSTDSRHIDEEGLFVALIGERFDAHDFIPAVQEQGATALLVSK---------EVDT 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             P ++V +T+K L L A  ++        A+TG+ GK++V   +  I  RSG
Sbjct: 74  TLPQVIVSDTQKALGLVAKHVHQVCHTFTFALTGSCGKTTVKEMLASILTRSG 126


>gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 471

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 145/325 (44%), Gaps = 30/325 (9%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           ++DSR ++ G +F+A+ G K DGH +I +A+  GA  ++       ++    +   + I+
Sbjct: 27  TADSRQVKGGEMFIALAGEKTDGHKYIARALQSGAAIVLAEEKRLRREGVPVLPEKSSII 86

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V+++ K L   A+    +    ++ VTG++GK++    V  +      + F++      
Sbjct: 87  AVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGKTTTKDMVAAVLG----TKFRV------ 136

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR-LDGIKL-IAGSFT 210
                 N     + I L   ++ L +   T V V E    GL Q + L  I    A   T
Sbjct: 137 ----HKNAGNLNTEIGL--PMTVLGAPSDTEVMVLEMGMRGLGQIKTLCEISCPCAAVIT 190

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H++   +++    AK  + E  LP+E  AI+  +D  S   M++A +   + L  
Sbjct: 191 NIGATHLELLGSRENIARAKWEIVES-LPEEGIAILNTEDKIS---MEKAASYHGKTLFY 246

Query: 271 GYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIA 324
           G +GKF    +  +++         T     K  + L   PLPG+  V +AL A G  + 
Sbjct: 247 GIEGKFGRPDLWAEEIIP-SGDTGTTFRARYKKENVLIRLPLPGKHNVLDALAALGAGLL 305

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFV 349
            G++     + LE L +   R E +
Sbjct: 306 NGVNLESGSQALEGLQISAMRLEIL 330


>gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 459

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 154/373 (41%), Gaps = 36/373 (9%)

Query: 25  WRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-SLQD 81
           W E  +    V++DSR +    +F+ ++G K DGH +I Q    GA   + S     +  
Sbjct: 19  WGEPDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVCLTSKPIPEVAG 78

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            SA        ++VD+T K L   A+    K    ++ +TG+ GK+S    V  +  +  
Sbjct: 79  CSA--------VLVDDTAKALRDLAAWHRKKFDIPVVGITGSVGKTSTKDMVSCVLSQ-- 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +F  +N +  P  +     L+  SS     + +  S  G +  RL  
Sbjct: 129 ----KYSVLKTQGNF--NNEIGLPLTV-----LNIDSSHETAVIEMGMSGFG-EISRLTA 176

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           I +      TN+G  HI+   +Q+    AK+ + E L  K    ++  DD   K +  + 
Sbjct: 177 IARPDIAIITNIGVSHIEKLGSQEGILKAKLEILEGL-HKNGLVVLNGDDPLLKPLKGKL 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVA 318
                R +  G  G   +         +Q  +  I+V    ++   P+PG   VYNAL A
Sbjct: 236 P---FRTVLYGMHGGSDYTASNYQTMGEQGTSFEITVNEAPYNVEIPVPGIHNVYNALAA 292

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
               I + I   +++  +++    PG       N  G +I  D Y  +  S++  +  + 
Sbjct: 293 IAAGIEMKIPMEIIINGIKQFS--PGNMRQSIINHNGIKIINDAYNASPQSMQAAINVLE 350

Query: 378 TITSG-RIIVVFG 389
            I+SG R I V G
Sbjct: 351 EISSGSRSIAVLG 363


>gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 961-5945]
 gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis G2136]
          Length = 445

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPRNELLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -KKNGVVFIDDSKGTN 330


>gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
 gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
          Length = 459

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 138/319 (43%), Gaps = 30/319 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V++D+R +  G +FVA+ G   DGH F+ +A  QGA A VV    +  D         
Sbjct: 29  NAVNTDTRSLLPGQLFVALRGENFDGHRFLQKAQEQGASAAVVDCIDAAVDL-------- 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L+V +T   L   A+R        ++A+TG+SGK++V      I Q       Q+GP 
Sbjct: 81  PQLLVSDTLIALGELATRHRATSNATLIAITGSSGKTTVREMTGAILQ-------QMGP- 132

Query: 151 STISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKLIAG 207
           + I+    +N +  P  ++ LA    +         ++E  + GL++  + +  +K    
Sbjct: 133 ALITQGNLNNHIGVPLTLFGLAPEHRF--------GAIELGASGLNEIAYTVAMVKPQVA 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN G+ H++   + Q    AK  + +  +  +   ++  DD    + + RA     RV
Sbjct: 185 ILTNAGQAHLEGFGSYQNIVLAKGEIIDG-VADDGLVVLNRDDPAFDQWLVRAGRR--RV 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            SV   G      KV A    Q      +G   D    L GE  + NA +AA     +G 
Sbjct: 242 ASVSRAGHAGADYKVIAGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAMAAAAARELGA 301

Query: 328 DSALVLEHLEKLHVVPGRF 346
            +  +   LE++  V GR 
Sbjct: 302 TNEHIKAGLEQVLAVKGRL 320


>gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
          Length = 453

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 47/324 (14%)

Query: 13  ELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L   L++ P    +R I   +++D+R+++ G +FVA+ G   DGH F+ +A+  GA A 
Sbjct: 9   QLAEILAVAPPVQSDRAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGAIAA 68

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV  ++  +        + P+L V++T K     A     +    ++AVTG+ GK++   
Sbjct: 69  VVDRSWESEGL------DLPLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTKE 122

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +    G            +    +N +  P  +     LS      V  + + AS 
Sbjct: 123 LIAAVLTTKG--------NVLKTQLNYNNEIGVPKTLL---ELSESHHYAVIEMGMRASG 171

Query: 192 H--GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
               L Q     I +I    TN+G  HI    +++A   AK  L  E +P +S AI+ +D
Sbjct: 172 EIAFLTQIARPTIAVI----TNVGTAHIGRLGSREAIAQAKCELLAE-MPNDSIAILNSD 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKK--VCA--IHNKQQVTISVEGKDFDFL 303
           +A    +M  A           +QG+ +   L+K  +C   I ++   TIS++    +  
Sbjct: 227 NAL---LMATAAKV--------WQGETLAYGLEKGNLCPELIDDR---TISID--SINLP 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGI 327
            PLPG     N L A  +   +G+
Sbjct: 271 LPLPGRHNAVNYLAALAVAKVLGV 294


>gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
          Length = 459

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 161/379 (42%), Gaps = 35/379 (9%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           ++ M+  E    ++ +D+R I  G +F+A  G + +G  F+  A+ +GA  ++VS++   
Sbjct: 17  LYKMEHEE--FTDIVTDTRKITPGVLFLAFKGERFNGEDFVRDAVEKGASGVMVSTSCPK 74

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +      T +L+ ++T       A     +    ++A+TG++GK++       +   
Sbjct: 75  AQLAGL---KTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKTTTKDLTAAVLSA 131

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G           + + A  N     + I L   L  L  +    V VE    GL  H++
Sbjct: 132 RG---------PVLKTQANYN-----NEIGLPLTLLGLRKEHTAAV-VEIGMRGL--HQI 174

Query: 200 DGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           + +  IA    G  TN+G  H++   + +    AK  +  E +P     ++ AD+ Y   
Sbjct: 175 EAMAPIAAPTVGIVTNVGETHMELLGSIENIAKAKSEMV-EAIPAGGTVVLNADNPYVA- 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311
            M+     G RVL+ G + +     K   I     ++ +  I  +G++  F F + G   
Sbjct: 233 AMRSQAREGVRVLTFGIEKEADVRAKEETIETIDGHETRFKIEWKGREQTFTFAMVGRHN 292

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           VYNAL A     A+G+  A     L  L     RFE    + +   +  D Y  +  S++
Sbjct: 293 VYNALAAIAAGFALGLTPAEAASGLRNLKATKMRFEV--QDVKTYHVINDAYNASPMSMK 350

Query: 371 MILKNIRTITSGRIIVVFG 389
             ++ +  +T GR I V G
Sbjct: 351 AAIETLSELTKGRKIAVMG 369


>gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
 gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
          Length = 452

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 149/366 (40%), Gaps = 37/366 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+A  +F+A+ G + D H F  Q +  GA A++V     +         N P 
Sbjct: 30  VSTDSRKIEASCLFIALKGERFDAHEFAGQVVEAGATALLVDHQLDV---------NCPQ 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++TR  +   A  +  +    ++ +TG+SGK+SV      I  + G + +  G    
Sbjct: 81  VIVEDTRIAMGQVAGWVRQQSKARVVGLTGSSGKTSVKEMTASILGQRGNTLYTAGNL-- 138

Query: 153 ISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                 +N +  P  ++ L     + +   G  H       H + ++  + +K       
Sbjct: 139 ------NNDIGVPLTLFRLTDEYQFAVIEMGANH------PHEI-EYTTNIVKPETALVN 185

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-- 268
           NL   H+    + +    AK  +++  LP+E  AI+  D    K             L  
Sbjct: 186 NLFGAHLAGFGSPEGVAKAKGEIYQG-LPEEGTAIVNLDSYSDKWQFGSRQTVWYYSLTE 244

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +  +    I +K++         T+       +   PLPG   + N L A+ L I++G  
Sbjct: 245 TADFYPSNIQIKQLTT-----DFTLHTPVGQVEITLPLPGVHNIANVLAASALAISVGAT 299

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVV 387
              + + +     VPGR   V  +    ++ +D  + +N   MI   N+     G  I+V
Sbjct: 300 LEDIKQGIATTKAVPGRLFPVRLSDT--KVVLDDTYNANDGSMIAAINVLAKMPGYRILV 357

Query: 388 FGCGGD 393
            G  G+
Sbjct: 358 AGDMGE 363


>gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42]
 gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42]
          Length = 456

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 148/373 (39%), Gaps = 52/373 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  I   ++D+R ++   +F+ + G   +GH F+PQA  +G  A+       L D S
Sbjct: 21  EFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAV-------LWDRS 73

Query: 84  ATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-- 137
                N P    +++VD+T + L   A     +    ++ VTG++GK++    +  +   
Sbjct: 74  ---EPNPPEGRAVILVDDTLEALQTLAKAYLKELGTRVIGVTGSNGKTTTKDMLHAVLGT 130

Query: 138 -----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASS 191
                + +G  +  IG   T+ +  +D  +        A+  + +LS       +V    
Sbjct: 131 QYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAV---- 186

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                             TN+G  H+    +++    AK+ +   L  +E   + Y    
Sbjct: 187 -----------------ITNIGESHMQDLGSREGIAEAKLEIINGL--REDGVLFY---- 223

Query: 252 YSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +  E + R     CR  + G      + LK++     ++    +++G D  F  P+ G  
Sbjct: 224 FGDEPLLRQKTYTCRTTTYGAGADNDLRLKEIK--QAEEGTYFNIDGIDRSFFIPVLGRH 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NA+ A    I  GI        L +L V   R E V T +    +   Y  +  S++
Sbjct: 282 NVMNAMAAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMK 341

Query: 371 MILKNIRTITSGR 383
             ++ I T+   R
Sbjct: 342 AAVELIETMKGYR 354


>gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
 gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
          Length = 468

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 147/353 (41%), Gaps = 22/353 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V       D       
Sbjct: 23  RVRAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD------- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I + +   S  + 
Sbjct: 76  -VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTV- 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                +S  ++N +  P  +  A               + A   G   +  D +      
Sbjct: 134 --VYANSGNRNNEIGLPLAVIAAP-----DDADFAVYEMGAGKLGDIGYLTDIVTPDVAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H++   +       K  ++  L P  + A+I  DDA++    ++   AGC VL
Sbjct: 187 VNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVPAGCAVL 245

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G Q    I    +    +  +  +     +      L G   V NAL AA + +  GI
Sbjct: 246 RFGLQATADITAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAMALVAGI 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
               +   L     VPGR   V     GG + +D ++ +N  SL++ +  + T
Sbjct: 306 PLPQIAAGLGLARSVPGR--QVAHALPGGAVLIDDSYNANPGSLDVAIDTLTT 356


>gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 456

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 137/336 (40%), Gaps = 47/336 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+DS  I+   +FV I+G + D H FI  AIA GA A++ S    +         N
Sbjct: 26  IENVSTDSNSIKENSLFVPIIGERVDAHTFIDSAIANGAVAVLTSEHDEMT-------GN 78

Query: 90  TPILVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQ-------QICQR 139
            P + V NT   L     + YGK    P+  + VTG+ GK++    +        ++ + 
Sbjct: 79  VPYIRVSNTTMALQEIG-KYYGKLMIMPK--IGVTGSVGKTTTKEMIACALSAGYKVFKT 135

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           SG S+ QIG   T+   + D+++                      + +  S  G      
Sbjct: 136 SGNSNSQIGVPLTLLKMSPDDQIAV--------------------IEMGMSMRGEMSRLS 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMK 258
           + ++L     TN+G  HI+  +T+      K  + + +  K+    I  DDA  +K   +
Sbjct: 176 ELVELDDAVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDGIVFINGDDAILNKHKSE 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGK-DFDFLFPLPGEFQVYNAL 316
             H    R+++ G      +      + N     T++++ K  +D    + GE  V NAL
Sbjct: 236 LRH----RIITFGLGNDNDYFATNIKVKNGGVDFTVNIKNKGSYDARLNVLGEHNVRNAL 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           VA  +    GI+    ++ L     V  R +    N
Sbjct: 292 VAIAVAERHGIEVTEAIKALAGYEGVSMRQQITDVN 327


>gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
 gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
          Length = 824

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 159/355 (44%), Gaps = 33/355 (9%)

Query: 27  ERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ++ I+ + +DSR +      +F A+   + DGH ++     +G    VVS+   L D  A
Sbjct: 22  DKNIDWLLTDSRSLAFPEATLFFALRSQRNDGHKYVADLYRRGVRDFVVSA---LPDDYA 78

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +        VV +  K L   A     +    ++ +TG++GK+ V  ++ Q      L S
Sbjct: 79  SRFPAATFYVVADPLKALQHLAECHRRRFDIPVVGITGSNGKTIVKEWLYQ------LLS 132

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGI 202
            Q+  T +  S+  ++++  P  + L  A + L     G++     ++   + Q R+   
Sbjct: 133 PQLVVTRSPRSY--NSQVGVPLSVCLLNAQTQLGIFEAGISQPGEMSALRPIIQPRI--- 187

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH 261
               G  TN G+ H +   + +     K+ LF     K++  +IY ADD    E +++A 
Sbjct: 188 ----GVMTNTGQAHQENFTSLEEKCAEKLSLF-----KDADVLIYDADDPVVAEGVRQAS 238

Query: 262 NAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            AG ++       +G  + ++KV     +  +T +   ++ DF  P   E  V NA+   
Sbjct: 239 FAGDQLAWSRTKDEGPLV-IRKVAHESERTHITYAYLQQESDFFIPFTDEASVQNAIHCL 297

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
            +C+ + +D+A++ + + +L  V  R E V    RG  +  D Y    NSL++ L
Sbjct: 298 AVCLYLHVDAAVIAQRMARLEPVAMRLE-VKQGVRGCILINDSYNSDVNSLDIAL 351


>gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae DSM 12163]
          Length = 452

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 132/332 (39%), Gaps = 23/332 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I QL+   +   +  I +V++D+R   AG +F+A+ G + D H F+  AI  G   ++VS
Sbjct: 9   IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               + D S         +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  KRLPV-DVSQ--------VVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G          +N +  P  +   K     +      + + A+  G 
Sbjct: 120 AILRECGETLYTAGNL--------NNDIGVPLTLLRLKPQHRYAV-----IELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++       NL   H++   +      AK  +F  L P    AII  +     
Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINGESNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S G      +   V         T+     D D   PLPG   + N
Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFTLHSPQGDVDVTLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           AL A+ L +++G   + V   L  L  VPGR 
Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRL 317


>gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 459

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 136/319 (42%), Gaps = 25/319 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ + +DSR ++AG  FVA+ G   DG  F+P A+++GA A++V     +Q     +   
Sbjct: 26  ISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGAAAVIVD---RMQPGFGPL--A 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V +T K L   A     +    I+A+TG+SGK+S    V  + ++      +   
Sbjct: 81  VPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEMVGSVLRQ------KYKT 134

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T  +F  +N++  P S + + K   Y    GV  +            R+    ++   
Sbjct: 135 VCTSGNF--NNQIGLPLSLLQMDKTTEY----GVFELGTNHPGEIATLSRIIAPDIVI-- 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H+ +  + +A    K  L    +     AI+  DD +SK +  R+  AG RV+
Sbjct: 187 VTNIGSAHVGHFGSVEAIAQEKTDLL-TFVSARGFAILGTDDFWSKRLHVRS--AG-RVI 242

Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            VG  Q     L ++       +  I    + F+   P        N+L AA +     +
Sbjct: 243 WVGDRQNSLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFLSSL 302

Query: 328 DSALVLEHLEKLHVVPGRF 346
            S  +   LEK     GR 
Sbjct: 303 SSEEITRGLEKTSFPEGRL 321


>gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
 gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
          Length = 453

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 38/299 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+  + DSR I+   +F+ I G K DGH FI  A  +G       +     DF   I   
Sbjct: 26  ISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGCSTSFTET--EALDFPEGI--- 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +++V++  + +   A     ++   ++AVTG+SGK++    +  +       S +   
Sbjct: 81  -SVVLVESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDLIASVL------SQKYKT 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS- 208
             T  +F  +N    P  ++        + Q    ++V     G+D   LD I+   G  
Sbjct: 134 LKTQGNF--NNEYGIPQTLF--------NLQPEHEIAV--IEMGMDH--LDDIRKSIGEV 179

Query: 209 ------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G  HI+  +TQ     AK  +FE + P +  A++  DD Y  ++  +   
Sbjct: 180 RPHISVITNIGTAHIEILKTQDNILAAKKEIFETMGPGDI-ALLNGDDVYLNKI--KEDE 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V+ VG +G+ + LK      + Q +    +G+ F F +  PG   VYN L A  L
Sbjct: 237 EPFSVVRVGIKGEDLSLKAEQVDSSAQGIRFVADGEHFHFAY--PGIHNVYNCLTAIWL 293


>gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
 gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
          Length = 452

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQGGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLGTLTGRRILIL 360


>gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20]
 gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae
           Rd KW20]
          Length = 457

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 140/325 (43%), Gaps = 36/325 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ ++++D+R   +  +F A+ G K D H ++ QA++QGA A+VV      Q  +++I  
Sbjct: 24  QVEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 76  SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   +++A 
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEI---SNHAI 242

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  Y  K IH       H  Q  T   IS +G + +   P  GE  V NAL A  L
Sbjct: 243 QYFNGKDYSAKNIH-------HTSQGSTFTLISPQG-EIEITLPYLGEHNVKNALAATAL 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346
            + +G     V   LE+   V GR 
Sbjct: 295 AMNVGATLTDVKAGLEQRSQVKGRL 319


>gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 458

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 152/373 (40%), Gaps = 55/373 (14%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S DSR I+ G +F A+ G + DGH ++  A+ +GA A VVS     ++F A       +L
Sbjct: 28  SIDSRTIKPGELFFAVKGERLDGHDYVQAALDRGAVAAVVS-----REFPARFNGTRNLL 82

Query: 94  VVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           V D+    L   A   R    HP  ++ VTG++GK++    +  +   S L   +     
Sbjct: 83  VADDPLLALHRLAEMVRSLWHHP--VVGVTGSAGKTTTKECIAHVLA-SKLKVLK----- 134

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             S    +N    P  +   +    ++    G++H    A+   L Q          G  
Sbjct: 135 --SEGNLNNHFGLPLQLLKVEPEHEIAVIEMGMSHAGEIAALAKLAQPN-------TGVV 185

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   H++   +      AK  L    LP+   A++ ADD +  +  +  H     VL 
Sbjct: 186 TNVAPVHLENFDSIAGIARAKYELIAA-LPRGGCAVLNADDEFVSQFGRDFHGT---VLM 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNAL--VA 318
            G       +K+      +    +   G  FD  F         PL GE  VYNAL  VA
Sbjct: 242 FG-------VKRAADFRAENVEMLGAAGSKFDLRFREKGYPAEMPLIGEHNVYNALAAVA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
            G+   I I+SA+    L+ L     R E V      G   V+  + SN  +L  ++  +
Sbjct: 295 VGVHHGIAIESAIA--SLKTLKPADKRGEVVEI---AGATVVNDCYNSNPKALNAMVDAL 349

Query: 377 RTITSGRIIVVFG 389
             + + R IV+ G
Sbjct: 350 AKMPAQRRIVIAG 362


>gi|56807399|ref|ZP_00365374.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Streptococcus
           pyogenes M49 591]
          Length = 243

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 26/244 (10%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID- 218
           ++LTTP  + L   ++   + G+TH+ +E SS      R+ G+    G F N+  DHI  
Sbjct: 17  SQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGP 76

Query: 219 -YHQTQQAYFNAKMRLFEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGY 272
             H T + YF  K      LL + S A++     D +S    +V  + H     V     
Sbjct: 77  IEHPTFEDYFYHK-----RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPL 126

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
               I   +  +   K Q+        +D    L G F   NA+ A   C+ +G   A +
Sbjct: 127 SDNQITTSQAFSFEAKGQL-----AGHYDI--QLIGHFNQENAMAAGLACLRLGASLADI 179

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + + K  V PGR E V T +   +++VDYAH  +SLE +L  +    +G+++++ G  G
Sbjct: 180 QKGIAKTRV-PGRME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPG 237

Query: 393 DRDQ 396
           ++ +
Sbjct: 238 NKGE 241


>gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
 gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
          Length = 454

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 17  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 71  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 127 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPGMNL 235

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 236 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 290 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 325


>gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa
           DSM 4126]
 gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa
           DSM 4126]
          Length = 436

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 165/399 (41%), Gaps = 68/399 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR ++ G +F A+ G   +G+ F  +A+ +GA A+V+      QD   TI      
Sbjct: 17  ICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNTI------ 70

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSSF 145
            +V++  + L L A+    K    IL +TG++GK++    +        ++   SG  + 
Sbjct: 71  -LVEDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSGNLNN 129

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG   ++ S  +D+ +              +   G  HV   AS   + Q         
Sbjct: 130 HIGVPLSLLSIQKDHEIA-------------IIEMGANHVGEIASYCQMAQP-------T 169

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G+ HI      +     K  LF+ L   +    I   DA  K + KR  NA  
Sbjct: 170 HGLITNIGKAHIGEFGGFENIIIGKSELFDFLKKNDGVPFINTQDAVLKNMEKRFSNA-- 227

Query: 266 RVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLC 322
             ++   +G  + LK  K  A      +  S EG  F  +   L G+F   N  VAA LC
Sbjct: 228 --ITFPNEGDDLQLKPEKGTAF-----LRYSTEG--FSHIDTHLVGQFNYLN--VAAALC 276

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--------YAHTSNSLEMILK 374
           I    +       +EK   +    E++  N R   I  D        Y    +S+E+ +K
Sbjct: 277 IGKYFEVT-----MEK--AIEATQEYMPENMRSQMIKTDNYTILLDAYNANPDSMELAMK 329

Query: 375 NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
           ++  I +   +V+ G     GD  + +   +G++A+DL 
Sbjct: 330 SLSAIENTESVVILGDMLELGDTAELEHEKLGELAVDLG 368


>gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 458

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 452

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 159/373 (42%), Gaps = 41/373 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  + IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQVINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + PI+ V++T   L   A + Y +H    ++AVTG++GK++    ++ +      
Sbjct: 78  ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   K  
Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314
           +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  + N
Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   + 
Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347

Query: 375 NIRTITSGRIIVV 387
            + T+T  RI+++
Sbjct: 348 TLSTLTGRRILIL 360


>gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
 gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
          Length = 469

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 155/391 (39%), Gaps = 76/391 (19%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI--------------- 71
           +++I  ++ DSR +  G +F+AI G + DGH FI Q   +GA  +               
Sbjct: 25  DKEITAITIDSRKVAEGGLFIAIKGERSDGHDFIGQCFEKGAACVISEKELPDEEHSYIQ 84

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V SS  +L+D +   R+N  + VV                        +TG+ GK+S   
Sbjct: 85  VESSLQALKDLALLYRNNLDVKVV-----------------------GITGSVGKTSTKE 121

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +        +++    T+ +F  +N +  P  ++    L+      V  + +    
Sbjct: 122 TISSVLSEK----YRV--LKTLGNF--NNEIGLPLTVF---RLTEDDEVAVLEMGIS--- 167

Query: 192 HGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              D   +D +  IA       TN+G  H++   T+     AK  +F  + P +   I+ 
Sbjct: 168 ---DFGEMDRLSKIAQPDICVITNIGLCHLENLGTRDGILKAKTEIFNHMNP-DGIVILN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD------- 299
            DD      + + H  G R L  G   K  ++   + ++      + ++ G D       
Sbjct: 224 GDDD-KLSTISQVH--GKRPLVFGISNKDGVYADNIKSL-GLDGTSFTIHGLDTADKYST 279

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           FD   P+PG   VYNA+ AA +   +G+ S  +   +  L  + GR   +  N   G   
Sbjct: 280 FDMTVPVPGHHMVYNAMAAALVGSVLGLSSLEIERGVRNLKTIAGRNNIIKEN---GFTI 336

Query: 360 VDYAHTSNSLEMILK-NIRTITSGRIIVVFG 389
           +D  + +N + M    ++     GR + + G
Sbjct: 337 IDDCYNANPVSMKASLDVLDTAIGRKVAILG 367


>gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
 gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
          Length = 458

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK353]
          Length = 456

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 172/416 (41%), Gaps = 75/416 (18%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    +     DSR I++G +FV + G + DGH FIP A AQGA A +           
Sbjct: 20  QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------- 67

Query: 84  ATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
               S+ P+     ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 68  ----SDRPVAEGAYILVDDVLAAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            S       G  + +IG   T+    +D                 +   G  H+      
Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD 
Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD- 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FP 305
               +++     A C+++  G     I L ++     +++ ++S E    +FL      P
Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLP 268

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + G++   NA++AA   +  G+  A + +   +L +   R E+    S G  I  D Y  
Sbjct: 269 VTGKYNATNAMIAAYAALQEGVAEAAITQSFSELELTRNRTEWKKA-SNGADILSDVYNA 327

Query: 365 TSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              ++ +IL+   TI S   GR + V     +     + + G +   L +  IVTD
Sbjct: 328 NPTAMRLILETFSTIPSNPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382


>gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
 gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
          Length = 454

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 157/355 (44%), Gaps = 55/355 (15%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL N  +I   ++ +  +  +S+D+R I+   +F+A+ G+  DG  +I  A  +GA
Sbjct: 7   KTITELTN--TIINEKYHDIMVKGISTDTRTIEKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 69  EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              VV+  Y ++ D+        P++ VDNT++F+   A          ++A+TG++GK+
Sbjct: 65  SCCVVNRDYRNINDY--------PVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKT 116

Query: 128 SVASFVQ-------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +    +        ++ +     + +IG + TI     D  +          A+  + ++
Sbjct: 117 TTKDIMSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEV----------AVLEMGTE 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +S   +    D      I +I    TN+G  H+   +T++    AK  + E  L +
Sbjct: 167 NFGEISQLTNIAHPD------IAMI----TNIGDSHLLNLKTKENIARAKFEILEG-LKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTIS 294
           +   I+  DD   +EV K+ +    + +S G      Y+ + I   +  +       T S
Sbjct: 216 DGIFILNNDDPVLREV-KQEYKLPEKTISFGIKPDSDYRMEMIKADETGS-------TFS 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +   D  F   L G  Q+YNA ++  +   +G+D + V + L+K+ +   R E +
Sbjct: 268 I--NDHVFNIELLGHHQMYNATMSIIVAELMGLDYSDVAKGLKKIELTGMRNELI 320


>gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
 gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
          Length = 454

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 17  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 71  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 127 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 235

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 236 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 290 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 325


>gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
 gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
          Length = 452

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 97/457 (21%), Positives = 190/457 (41%), Gaps = 52/457 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R IQ G +FV ++G + DGH ++ QA+++GA+A + +++  + +   ++++   +
Sbjct: 26  VSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQASLWATSVPVPE---SLKNEDRL 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSSF 145
           L V++T   L   A     +    ++AVTG++GK++V   +         I +  G  + 
Sbjct: 83  LFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGKTTVKDLLYATLAPLGSIYKTQGNYNN 142

Query: 146 QIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG P + +S  A    L     +     +  LS      ++V                 
Sbjct: 143 HIGLPLTVLSMPANCQTLILEMGMSGLGEIELLSKLATPDIAV----------------- 185

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++   +++    AKM +   L P     +++ D    + ++      G
Sbjct: 186 ----VTNIGESHLEQLGSRENIAKAKMEIALGLKPT---GVLFLDG--DEPLLSHYVKEG 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            + +    + K + +  + A  +    TI     D   +    GE  V NA  A  + + 
Sbjct: 237 VQTVGFSSENKIV-IHDLEAREDGYSFTIDEHSYDIKLI----GEHNVKNAAYAVSVALH 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-G 382
           +G+    V   LE++ +   R E +    +G  +  D Y  +  S++  +K ++   +  
Sbjct: 292 LGLSPEQVARSLERVAISKMRLEKI-EGQKGALLLNDAYNASPTSMKAAIKTLKAYPNYE 350

Query: 383 RIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           + + V G     G D +   R +  +I   +    +V +      D  K R   I  +  
Sbjct: 351 KKVAVLGDIYELGIDEEALHRSVADEITEPITTAVLVGEKGQWIADEMKRRGSNIPFV-S 409

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           F+EK    + I   ++   K  VL  A +G E   IV
Sbjct: 410 FVEKEEATDYIEGLLD--GKTVVLFKASRGLELESIV 444


>gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
 gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
          Length = 468

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 155/371 (41%), Gaps = 43/371 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R ++AG +FVA+ G   DG  F  +A+ +GA A++V         +A   ++  +
Sbjct: 31  ITTDTRKVEAGDLFVALRGENFDGTAFAAEALERGAAAVLVDQKTPASVLAALNAAHGGV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGLSSF 145
           LV ++T +     A     K    ++A+TG++GK++       V S   ++C+ +   + 
Sbjct: 91  LVAEDTLRAYQDIAHAWRMKFNIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++G   T+ S   ++                      T   VE    G+ Q  +  +  I
Sbjct: 151 EVGLPLTLLSITPED----------------------TAAVVEIGMRGMGQ--IAALAPI 186

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           A    G  TN+   H++   + +    AK  L    +P     I+ ADD      M+ + 
Sbjct: 187 AEPSIGIVTNVCEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVAG-MRSSA 244

Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             G RV++ G      +  + +  + +  +  ++  G+  ++   LPG   V NAL A  
Sbjct: 245 ADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWGGERHEYAISLPGRHNVSNALAALA 304

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRT 378
               +G+    + E L  L     R+E    +  G    ++  Y  + +S+   L+    
Sbjct: 305 AGFVLGMTPQEMQEGLTHLTAEKMRYEV---HQVGAWTLINDAYNASPSSMRASLETTAA 361

Query: 379 ITSGRIIVVFG 389
           +  GR + V G
Sbjct: 362 LYPGRRVAVLG 372


>gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 482

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 141/344 (40%), Gaps = 32/344 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +DSR I    +FVA+VG + D H F+  A   G  A ++SS    QD      ++
Sbjct: 32  LSRVGTDSRQIDRNELFVALVGERFDAHDFLSDAAKAGTGAALISS----QD---KCPAD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V NTR  L   A      HP  +  VTG++GK++V   +  I + +      +G 
Sbjct: 85  LPAICVSNTRVGLGNLAKAWRANHPIPLALVTGSNGKTTVKEMIASIFKAA------VGE 138

Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             T+ +    +N +  P  +   ++   L+    G+ H    A    + Q     I LI 
Sbjct: 139 QHTLVTKGNLNNDIGLPLTLLKLRSTDRLAVVELGMNHPGETAQLAVIAQAN---IALI- 194

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T  A           L P +  AI  AD  ++   + R   AG +
Sbjct: 195 ---NNAQREHQEFMATVAAVAEEHSDAIRTL-PSDGVAIFPADSEFAG--VWRQAAAGRK 248

Query: 267 VLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           V+       Q K       C + N   V I  E    +      G   V NAL A+ + I
Sbjct: 249 VIDFVLSSAQTKASAAVTGCLLSNGL-VQIKSEQGTIEVQLNTLGSHNVRNALAASAVGI 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           A G+    + + LE    V GR +    +S   R  +D ++ +N
Sbjct: 308 AAGVSLEKIKQGLESFSPVNGRMQAKAIDS--SRTLIDDSYNAN 349


>gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
 gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
          Length = 454

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 9/122 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I+ VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V     +       
Sbjct: 21  ELLIDAVSTDTRTIERGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRLDV------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N P +VV +T+  L  FAS ++       +A+TG+ GK++V   V  I Q  G   F 
Sbjct: 74  --NVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVLFT 131

Query: 147 IG 148
            G
Sbjct: 132 AG 133


>gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
 gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
          Length = 452

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 133/317 (41%), Gaps = 23/317 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N+V++D+R + AG +FVA+VG + D H F  +AI  GA+A++VS    +         +
Sbjct: 24  LNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEAIDSGAQALLVSKHLPV---------S 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV++TR      ++ +  +    ++A+TG+SGK+SV      I +  G + +  G 
Sbjct: 75  VPQVVVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKTSVKEMTAAILRECGETLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +N    P  +     L   +      + + A+  G   +  D +K  +   
Sbjct: 135 L--------NNDYGVPMTL-----LRLTAEHQYAVIELGANHQGEIAYTTDLVKPESALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL   H++   +      AK  +F+  LP    AI+  +            +      S
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFQG-LPANGIAILNEESNDWPNWQTTLQDKTVWRFS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                     + +    +     +     + + + PLPG   + NAL AA L +++    
Sbjct: 241 PQAAACDFSARDIRIAQDGTHFVMKTPRGEAEIVLPLPGRHNIANALAAAALALSVDAPL 300

Query: 330 ALVLEHLEKLHVVPGRF 346
           + V + L+ L  VPGR 
Sbjct: 301 SAVQQGLKNLQSVPGRL 317


>gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK49]
          Length = 456

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 161/388 (41%), Gaps = 74/388 (19%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78
           Q+    +     DSR I++G +FV + G + DGH FIP A AQGA A      VV  AY 
Sbjct: 20  QFENIALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSERPVVEGAY- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137
                         ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 78  --------------ILVDDVLTAFQRLAQYYLKKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                 +  G  + +IG   T+    +D                 +   G  H+      
Sbjct: 124 TTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD 
Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD- 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FP 305
               +++     A C+++  G     I L ++     +++ ++S    D +FL      P
Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSF---DCNFLEQSIDLP 268

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + G++   NA++AA   +  G+  A + +   +L +   R E+    + G  I  D Y  
Sbjct: 269 VTGKYNATNAMIAAYAALQEGVSEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNA 327

Query: 365 TSNSLEMILKNIRTITS---GRIIVVFG 389
              ++ +IL+   TI +   GR +VV  
Sbjct: 328 NPTAMRLILETFSTIPANPGGRKLVVLA 355


>gi|289810798|ref|ZP_06541427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 160

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH  
Sbjct: 18  TTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGD 77

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADD 250
              Y  AK  L+         AI+ ADD
Sbjct: 78  MAHYEAAKWMLYST--HHHGQAIVNADD 103


>gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
 gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
          Length = 452

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LPK   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPKNGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|118618794|ref|YP_907126.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium ulcerans
           Agy99]
 gi|166224709|sp|A0PTI6|MURC_MYCUA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118570904|gb|ABL05655.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium ulcerans
           Agy99]
          Length = 488

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ + +AY        E L P  +  ++ ADD  S  + +R+   G RVL 
Sbjct: 189 TNIEADHLDFYGSTEAYVGVFDAFVERLAPGGA-LVVCADDPGSAALAERSAELGIRVLR 247

Query: 270 VGYQGKFIHLKKVCAIHNKQ-------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G  G          +  +Q       Q+ ++ E         +PG     N L A    
Sbjct: 248 YGSAGHAGAALAATLVSWEQRGTGAVAQIQLAGEADPRSMRLSVPGRHMALNVLGALLAA 307

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
           I +G     VL+ L     V  RFE VGT +   R++ DYAH    +   L+ +R++   
Sbjct: 308 IEVGAPVGEVLDGLAGFEGVRRRFELVGT-AESVRVFDDYAHHPTEVRATLEAVRSVVRQ 366

Query: 381 --SGRIIVVF 388
             SGR++VVF
Sbjct: 367 SGSGRLLVVF 376


>gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halorhodospira halophila SL1]
 gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Halorhodospira halophila SL1]
          Length = 450

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 141/345 (40%), Gaps = 47/345 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR   +G +FVA+ G + DGH F   A A+GA A++ +               
Sbjct: 25  VTGVALDSRRATSGSLFVALPGARCDGHDFADDAAARGAVAVLGTRPVG----------A 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVV++    L++  +    +    ++AVTG++GK++V   +  +   SG       P
Sbjct: 75  LPTLVVEDPAAALAVLGAECRRRSGVRLVAVTGSNGKTTVKELLAAMLAESG-------P 127

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH----VSVEASSHGLDQHRLDGIKLI 205
           T   +   ++N L  P           L   G  H    + + A++ G         +  
Sbjct: 128 T-LATEGNRNNLLGVPE---------MLCRLGAGHRFAVIEMGANAPGEIAQLTAWAQPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN G  H++   +      AK  LF+ L P++  A++ ADD +    + R      
Sbjct: 178 VGVVTNAGPAHLEGFGSLDGVARAKGELFQGL-PRQGVAVLNADDDFCG--LWREMAGAR 234

Query: 266 RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           R L+ G   G+F H        +  ++ + + G       PL G     N   AA    A
Sbjct: 235 RCLTFGADAGQFRHRG------HGSRLELDLGGGWMAAPTPLLGGHNAQNIAAAAACAAA 288

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSN 367
           + + +  +L+ +     VPGR E      RG  G   VD  + +N
Sbjct: 289 LEVPARTILDRISSAAAVPGRLEL----RRGDHGGWLVDDTYNAN 329


>gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
 gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
          Length = 454

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 141/336 (41%), Gaps = 42/336 (12%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E +I  V++D+R +  G +F+ ++G   +GH F  +A+  GA A++ +   +   F  
Sbjct: 22  FGEEQIYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQKEANPPFG- 80

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P+++VD+T   L   A     +    ++ +TG++GK++    +  + Q    ++
Sbjct: 81  -----VPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQ----TT 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +Q+  T    +F  +N +  P  I     L+      +  + +  S+ G  +   +  + 
Sbjct: 132 YQVHKTD--GNF--NNHIGLPLTI-----LAMPEGTEIAVLEMGMSAKGEIEFLSNLAEP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKE 255
                TN+G  H+    +++A  +AK  + + L  K+     Y  D         A S++
Sbjct: 183 ETAVITNIGESHMQDLGSREAIADAKCEITKGL--KKDGTFYYLGDEPLIRDRATALSQQ 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           V        C +       K  H+ ++      +     VEG    FL P+ G+  V NA
Sbjct: 241 VKTFGEAEDCDI-------KVTHINQLA-----EGTEFQVEGYAQGFLIPVLGKHNVKNA 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           L A  +    G++   + + L +  +   R E   T
Sbjct: 289 LAAIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKT 324


>gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 452

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 142/333 (42%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q ++  I++V++D+R + AG +FVA+ G + D H F+  A   GA A++VS    +   
Sbjct: 17  LQGQDLTIDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSAKENGAGALLVSRKLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P +VV +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G          +N +  P  +     L          + + A+  G     +   
Sbjct: 128 TLYTAGNL--------NNDIGVPMTL-----LRLTKEHEFAVIELGANHQGEIAWTVSLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
              A    NL   H++   + +    AK  ++   LP +  AI+ AD+           S
Sbjct: 175 CPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTG-LPADGIAIMNADNNDWLNWQSIIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++  + + NA     +  +    IH+       +  + T++      D L PLPG   + 
Sbjct: 234 RKTWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLNTPTGGVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +A+G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMAVGASHDAIKTGLANLKAVPGRL 317


>gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
 gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
          Length = 462

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S++S  I+   +F+A++G + DGH FI QA+  GA+A++V+   S+         N
Sbjct: 26  INTISTNSNEIKKKCMFIALIGKRYDGHDFIEQAVMAGAQAVLVNRYVSV---------N 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P ++V +T   L   AS L  +    ++A+TG+SGK+SV +    I +  G
Sbjct: 77  VPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSSGKTSVKNMTVSILKNCG 128


>gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 469

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 61/334 (18%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I++G +++A+ G   +GH FI  A   GA A++ S           + ++ P+
Sbjct: 29  VSTDTRTIESGAVYLALKGPNFNGHDFIEAAENAGASAVIASE---------NVTTSLPV 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V++T++ L L  + +        +A+TG+SGK++V      I  R G         +T
Sbjct: 80  ISVEDTKEALGLLGAAVKQHIAPKTIAITGSSGKTTVKEMCAAILARRG------NVLAT 133

Query: 153 ISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +F  +N +  P + + L     Y   + G  H+   A +  L       +K    +  
Sbjct: 134 NGNF--NNDIGVPLTLLRLEPHHEYAVMELGANHLGEIAYTTNL-------VKPDVATIV 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N    H++   +      AK  +F+  L K+  AI+  D  +++                
Sbjct: 185 NAAASHLEGFGSLLGVARAKSEIFKG-LEKDGVAIVNVDSQFAEF--------------- 228

Query: 271 GYQGKFIHLKKVC--------AIHNKQQVTISVEG-KDFDFLFP---------LPGEFQV 312
            +QGK    K +         A    + +TI ++G   F  + P         +PG   V
Sbjct: 229 -WQGKLKQTKTLTFSPQQKNDADFQAEDITIGLDGCASFHLVCPQGEIAIQLTIPGVHNV 287

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            NALVAA L + +G +   V + L  +  V GR 
Sbjct: 288 GNALVAAALTLQVGANLENVRDGLIAMQQVSGRL 321


>gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
 gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
          Length = 466

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 147/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V          
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQP------- 83

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             I +N   LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDANIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G  H      +  L Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     +     AK  ++  +LP +  AI+   D ++ E+ + A
Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTTEIREAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +    ++S G  G     +      +      + +G  F  L P  GE  V NA  A  
Sbjct: 246 KS--HHIMSFGTGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+G+    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGVSLDDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350


>gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 444

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 153/369 (41%), Gaps = 61/369 (16%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           E S D+R I    +F A+ G+K+DGH F+ +A+ + + A+V  S     DF      N  
Sbjct: 25  EASIDTRTIGKNDLFFALKGSKKDGHEFVDEALIKASGAVV--SKNEGMDF-----KNKT 77

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQ---QICQRSGLSS 144
           +++VD+T K L   A  L  K    I+AV G++GK++    +ASF+    +I +  G  +
Sbjct: 78  VVIVDDTLKSLQNLAGYLRKKFKGKIIAVVGSNGKTTTKELIASFLSKKYKILKTEGNFN 137

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG    IS      R+   + I +              + +  +  G  +   D +  
Sbjct: 138 NNIGVPLCIS------RIENNTEIMV--------------LELGTNRPGDIKELCDIVYP 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G +HI+   + Q     ++    E+LP         DD +  + +KR     
Sbjct: 178 DYALITNIGYEHIEGFGSIQGVREGEL----EILPYVKTVFANGDDKFLMDGLKRYSG-- 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVYNA 315
            ++L+ G       + K C     + +    +  +FDF           PL G + +YN 
Sbjct: 232 -QILTFG-------MSKECDFR-AENINFYNDHVEFDFYSDIAAFAVKTPLVGIYNIYNL 282

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
             A  +   +GI    + +  E    V  R E +  N  G  I+ D Y    +S+++ L+
Sbjct: 283 TGAIAVATFLGISKCSIQQITESFTSVKMRGEIIKIN--GVEIFFDAYNANPSSMKVALQ 340

Query: 375 NIRTITSGR 383
            +     GR
Sbjct: 341 ELTRRKKGR 349


>gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
 gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
          Length = 452

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRQAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Mississippi]
          Length = 456

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 154/364 (42%), Gaps = 35/364 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV       + S      
Sbjct: 17  LGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVV------DEVSVPTADC 70

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V +T + L   A+         ++A+TG++GK++    +     + G   +    
Sbjct: 71  GPLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYY---- 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
                + A  N L    P+Y A       ++    V +E   +   +  +D +  IA   
Sbjct: 127 -----NEANYNNLIG-MPLYAANL-----TEDAEFVVLEMGMNSPGE--VDALSRIARPD 173

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   
Sbjct: 174 VAVITNVGPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCA 232

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R++S G  G    ++          VT    G++  +          Y+  + A +  A 
Sbjct: 233 RIISFGV-GAGADVQIFRREEPSNPVTFRCFGEELQYNLKSGARHLAYSVAITAAVGRAF 291

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMI--LKNIRTITS 381
            ID       +E+   VP     V   +  GR  + +D A+ +N L M+  ++N+  +  
Sbjct: 292 SIDLTQARGAMEEF--VPLEGSKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNH 349

Query: 382 GRII 385
            R++
Sbjct: 350 ARVL 353


>gi|324998739|ref|ZP_08119851.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia sp. P1]
          Length = 478

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 130/348 (37%), Gaps = 50/348 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            ++AV GT GK+S  S V    Q +G   SF IG   ++S     +       +++ +A 
Sbjct: 114 RLVAVAGTHGKTSTTSMVTVALQHTGADPSFAIGGDLSVSGSGAHH---GSGDVFVVEAD 170

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               S      SV                      TN+  DH+D+H  +  Y     R  
Sbjct: 171 ESDGSFTAFAPSVAV-------------------VTNVEPDHLDHHGDEATYRAVFERFL 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQV 291
           E L+P  +  +  ADD  S+ V   A  AG  V   G      +   L          + 
Sbjct: 212 ERLVPGAT-LVTCADDPGSELVAVHAERAGITVRRYGRTATGSQDARLLDFAPDGVGSRT 270

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G++ +    +PGE    NAL A     A+  D A +LE L     V  RFEF G 
Sbjct: 271 RFRWGGEEHELALGVPGEHMALNALGAFLAGTAVDQDPAALLEGLAGFGGVQRRFEFKG- 329

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCGGDRDQGKRPIMGKI 405
             RG  +Y DYAH    +   L+  R          GR++V F          R   G+ 
Sbjct: 330 RVRGVAVYDDYAHHPTEVAATLRAAREAAPVVQGRRGRVLVAFQP--HLYSRTRLFAGEF 387

Query: 406 --ALDLADIAIVTDDNPRSEDPE------------KIRAEIIHGIPGF 439
             +L LAD  +V D     EDPE            ++ AE +H  P +
Sbjct: 388 GASLSLADEVMVLDVYGAREDPEPGVGPALITDQVRLPAERVHRAPSW 435


>gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
 gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
          Length = 477

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 142/386 (36%), Gaps = 30/386 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  +   P+      I+ +S DSR +Q G  F AI G   DGH F   AI  GA  +VV
Sbjct: 10  LVTAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKAGAGVLVV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +         +  R   PI+VV++    L         +    I+AVTG++GK++    +
Sbjct: 70  AEG----KLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +    G           + + AQ        P+ LA+           +   E   + 
Sbjct: 126 RHVLSAVG----------KVHASAQSFNNHWGVPLTLAR-----MPVDCDYAVFEIGMNH 170

Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            D+ R  +  ++      T +   H+ + +       AK  +FE + P +  AI+  DDA
Sbjct: 171 PDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEP-DGAAILNRDDA 229

Query: 252 YSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
             K + K AH AG   V   G   +       C +H +   +   + G D       PG 
Sbjct: 230 RFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI------YVDYA 363
             V N L   G    +  D   V+  L  L    GR +       GG I      Y    
Sbjct: 290 HMVQNVLAVLGAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLIDESYNANP 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFG 389
            +  +   +L        GR I V G
Sbjct: 350 ASMAAAMALLNTTPVAGEGRRIAVLG 375


>gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
 gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
          Length = 477

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 44/334 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIR 87
           I  V +DSR ++   +FV ++G  +DGH ++PQAI +GA  + +S  +  +  ++   + 
Sbjct: 30  IKSVQTDSRLVEKNTLFVPLIGENQDGHSYVPQAIEKGASVVFISMKNFENNGNYFVELH 89

Query: 88  SNTP---ILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLS 143
              P    + V+NT + L   A+R   K P  I + VTG+SGK++    +  I  +    
Sbjct: 90  EKNPSVIFIAVENTLEALQKSAARYVEKFPHLIKIGVTGSSGKTTTKEILVSILSQK--- 146

Query: 144 SFQIGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                    IS+    N  T  P  ++  +A          H   E     +  +R + I
Sbjct: 147 ------YKVISNKGNLNSETGLPLSVFNIRA---------EH---ECGVFEMGMNRENEI 188

Query: 203 KLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             IA          TN+G  HI    +++     K ++F          +I  DD +S +
Sbjct: 189 GEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIF-SYFGGFGTGVIPVDDEFS-D 246

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +K   +       V Y      +K +C +  K     S++G   + + PLPG++   +A
Sbjct: 247 FLKNEIDGKV----VFYGNDTDSVKYICDMGLK-GTKFSIDG--IETILPLPGKYNYKDA 299

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           L A  L   +G+ S  + + +  L  + GR E +
Sbjct: 300 LGAIALAQVLGLSSRQISDGISSLKPLSGRSEIL 333


>gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 456

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 189/458 (41%), Gaps = 48/458 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N + +DSR  + G IFVA+ G + DGH F  +AI QGA A++V+        + T+  
Sbjct: 25  EVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAIEQGATALLVTK-------TVTVPP 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ++ V +T + L   A+    +    ++AVTG++GK+S    +  +            
Sbjct: 78  QVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSNGKTSTKDMIAAVLNTR-------- 129

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLIA 206
              T+ +    N         LA   ++ ++       VE    G  +  L     K   
Sbjct: 130 -YKTLKTQGNYNNELGLPLTLLALDQTHQAA------VVEMGMRGFGEIDLLARLAKPTG 182

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  H++   + Q    AK  + + +   E  AI+  D   S E+  +      +
Sbjct: 183 AVITNIGEAHLELLGSVQNIAAAKAEVLDHI-GAEGFAILNGD---SPELRNQVSRCQGQ 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V      G+   + +   +  +  +  +S  G   +   P+PG   V N++ A G+ + +
Sbjct: 239 VWFYSINGQTDLVARNVRVEGRGVRYDLSYPGGTGEIYLPIPGSHNVMNSMAAVGVGLRL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
           GI    ++  L ++ +   R E +  N+    +  D Y    +S +  LK +  +  GR 
Sbjct: 299 GIPFTDIVRGLAQVELTGMRLEIIKANNM--TVINDVYNANPSSTKAALKVLAEVAPGRK 356

Query: 385 IVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           I V G     G   + G R +    AL      +   D  R      I+     G+PG  
Sbjct: 357 IAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDLARFTAQGAIKG----GLPG-- 410

Query: 441 EKGNRIEAIRTAIEMLNK----QDVLVVAGKGHETVHI 474
           ++ +  +  + AIE+L +     D ++V  KG  ++H+
Sbjct: 411 DRVHHCDNNKLAIEVLRQVMQPGDTILV--KGSRSMHM 446


>gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
 gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
          Length = 456

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 142/343 (41%), Gaps = 40/343 (11%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           ++     +++ I  VS+D+R IQ   +F+ +VG K DGH F   A+ +GA A +    + 
Sbjct: 16  TLVTTSMKDKIIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDAVKKGAVATLWDKRHP 75

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A       I++VDNT +     AS         ++ +TG++GK+     +  I +
Sbjct: 76  TPYLDA------GIIIVDNTLQAYQKLASSYLKATGAKVVGITGSNGKTGTKDILASILK 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                +F++  T+       +N +  P  I                +  E     +   R
Sbjct: 130 E----NFRVHNTAK----NLNNEIGVPKTIM------------EMDLDDEVVVLEMGMER 169

Query: 199 LDGIKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              IK +           TN+G  H+    T++    AK  + E L P +   I   DD 
Sbjct: 170 FGEIKTLTNIARPDIAVITNIGDSHLLELGTKENIARAKFEILEGLKP-DGVFIFNNDDE 228

Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +EV+K  +    +V+ +G  +   + ++ + +       +I     ++ +  P  G+ 
Sbjct: 229 VLREVIKE-YTITQKVIKIGTREDSDVIIRPIRSDEEGSSFSIG----EYAYSIPFIGKH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           Q+YNA VA  +   +G++   ++  L ++ +   R E +  +S
Sbjct: 284 QIYNASVAITIAGLLGMNYGDIVRGLSRVKLTGMRMELIHLSS 326


>gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 477

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 143/352 (40%), Gaps = 46/352 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N VS D+R +Q G +FVA+   + DGH F+ QA+  GA A +V+           +  + 
Sbjct: 24  NGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQALDSGAGAALVTH------VPEGVGEDA 76

Query: 91  PILVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSS-----VASFVQQICQRSGLS 143
           P+L+V++ +  L     A R        + AVTG+ GK+S     +A F  Q    + + 
Sbjct: 77  PLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVGKTSTKEMLLAIFGDQGKAHASVD 136

Query: 144 SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           S+    G   T++   +D         Y    +       +  ++ +A  H         
Sbjct: 137 SYNNHWGVPLTLARMPRDTD-------YAVIEIGMNHPGEIAPLAKQAQPH--------- 180

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A   TN+   H++  +   A    K  +F+ + P    A+I AD  +S  V+ +A 
Sbjct: 181 ----AAMVTNVAAVHLEAFKDVAAIAVEKASIFDGMEPG-GVAVINADHDHSDIVLDKAL 235

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G R  + G +G    L  V            V G    +    PG     NAL A  +
Sbjct: 236 ERGLRETTFGRKGHHYTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALGALAV 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMI 372
             A+G D AL ++ L       GR+  +VG   R  +I +D      +LE+I
Sbjct: 296 AEALGADRALAVQSL-------GRWSPYVGRGVR-EQILLDPVDNHLTLELI 339


>gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895]
          Length = 452

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 160/378 (42%), Gaps = 49/378 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  I+ V++D+R +  G +FVA+ G + D H F   A   GA A++VS        
Sbjct: 17  LQGADLTIDAVTTDTRKVTPGCLFVALKGERFDAHDFADNAKEGGAGALLVSRP------ 70

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              +  + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 71  ---LDCDLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
           + +  G          +N +  P + + L     Y   + G  H    A + GL +    
Sbjct: 128 TLYTAGNL--------NNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPEAA 179

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--------- 251
                     NL   H++   +      AK  ++   LP    AI+ AD+          
Sbjct: 180 -------LVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPVNGIAIMNADNNDWLNWQGII 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++V + + NA     +  +    IH+       +  + T+     D D L PLPG   
Sbjct: 232 GDRKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGDIDVLLPLPGRHN 282

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SL 369
           + NAL AA L +A+G     +   L  L  VPGR   +  N    ++ +D ++ +N  S+
Sbjct: 283 IANALAAAALSMAVGATLDAIKTGLANLKAVPGRLFPIQLNDN--QLLLDDSYNANVGSM 340

Query: 370 EMILKNIRTITSGRIIVV 387
              ++ +  +   R++VV
Sbjct: 341 TAAVQVLSEMPGYRVLVV 358


>gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
 gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
          Length = 452

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F  L P+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +A+G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMAVGATLDAIKAGLANLKAVPGRL 317


>gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
 gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
          Length = 472

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 36/364 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR ++ G +FVA+ G + DGH F+ Q   +GA   ++S   ++           P 
Sbjct: 38  VSIDSRSLEPGDLFVALTGAR-DGHEFVVQTADRGAAGALISKPVAI-----------PA 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++V++T   L         + P+    AVTG+ GK+SV   V+   +R+G +       +
Sbjct: 86  VLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTSVTRAVEAGLRRAGKAH------A 139

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFT 210
           ++ S+  +N +    P+ LA+ +   + + V  V +   +H  +   L G I+  A + T
Sbjct: 140 SVKSY--NNHIGV--PLTLAR-MPRDTQRAVFEVGM---NHSGEITPLSGFIRPHAVAIT 191

Query: 211 NLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            +G  H++ +   ++    AK  +F  + P    A++ AD+ +   +   A  AG  V S
Sbjct: 192 TVGPVHLENFADGEEGVARAKAEIFAGIEPN-GVAVLNADNPWFPLLKAEAEKAGAEVWS 250

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  +G    L +  A  N   +T  + G    F     G     N+L    +  A+ +D
Sbjct: 251 FGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVLLMLEALDVD 310

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNI--RTITSGR 383
               L  L +   + GR      +  GG    VD ++ +N  S++  LK +  R +   R
Sbjct: 311 RETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTLGAREVAGRR 370

Query: 384 IIVV 387
           I+V+
Sbjct: 371 IVVL 374


>gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
          Length = 447

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 147/329 (44%), Gaps = 40/329 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++N  + D+R IQ G +++ +VG K DGH +IPQA  +GA A + +    ++D S  +
Sbjct: 20  DDQVNGFTQDTRVIQPGNLYIPLVGIK-DGHDYIPQAFNKGAAATLTNRP--IEDDSHNV 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 ++V++T K L   A  +       ++ +TG++GK+S    +  +       S Q
Sbjct: 77  ------ILVEDTMKALGDLARYVRVHSHAKVIGITGSAGKTSTKDMIASVI------SQQ 124

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                T  +F  +N +  P        L+ L   G   + +E   + L++  +D +  IA
Sbjct: 125 YTTLKTQGNF--NNNIGLP--------LTILRYNGEEVMVIEMGMNHLEE--IDYLTKIA 172

Query: 207 ----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                + TN+G  HI    +++    AKM +   +       ++  D+    +++   H 
Sbjct: 173 LPDIAAITNIGTAHIGELGSRENILQAKMEIVHGM--NHGTLVVNNDN----DLLSTVHP 226

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            G  + ++G +     LK    I N+   +  + V G+D+     +PG   ++NAL+A  
Sbjct: 227 EGISLKTIGIESDA-DLKATDIILNEDMSSFRVKVNGQDYAVRVYVPGVHFIFNALIAIQ 285

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + + + I     +  +E   +   R + +
Sbjct: 286 IGLLLDIPMEKCIRGIETFELTKNRNDIL 314


>gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 465

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 143/352 (40%), Gaps = 30/352 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F     + +I  + +DSRH + G  F+A+ G + D H F+ Q  AQG +  +V       
Sbjct: 28  FRQNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQGCQIAIVERP---- 83

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                I S+   L+V +TR  L    + R        ++A+TG+SGK++    +  I  R
Sbjct: 84  -----IDSDIAQLIVKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTTKEMLGSILSR 138

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                  + PT  I+    +N L  P  +     L          + + A+  G   +  
Sbjct: 139 -------LAPT-LITRGNLNNDLGVPMML-----LELRPEHQFAVMELGANHQGEIDYTS 185

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + ++       N+G  H+     +     AK  ++  +LP +  AI+ +DD ++  + + 
Sbjct: 186 NLVQPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHILP-DGTAIVPSDDDFTATIRQN 244

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A N    +LS G +G  ++  ++       Q  +           P  G   V NA  A 
Sbjct: 245 AGNH--PILSFG-EGGDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAAT 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
              +AIGI    +++ LE+     GR  F+        +++D  + +N   M
Sbjct: 302 AFALAIGIPLDDIVQGLEQAQGAKGRLNFI---QHQNYLFIDDTYNANPTSM 350


>gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
 gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
          Length = 460

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 148/335 (44%), Gaps = 47/335 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+DSR IQ G +++ ++G   DG LFI +   +GA A        L D    I++N
Sbjct: 27  IKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKECEDKGASAF-------LADTDCKIKNN 79

Query: 90  --TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS----- 140
              P + V++T K L   A R Y    +N  ++ +TG++GK++    + ++ +       
Sbjct: 80  ISIPYIRVEDTLKSLQDLA-RAYRSELKNTKVIGITGSNGKTTTKDLLYEVLKEKYKVQK 138

Query: 141 --GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G  + +IG   TI S  +D  +          A+  + +     +S+  +    D   
Sbjct: 139 TIGNLNNEIGVPKTILSLDEDTNI----------AIVEMGTDSFGDISLTTNISRPD--- 185

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              I +I    TN+G  H++  +T++    AKM + E L   +    IY  D  + +   
Sbjct: 186 ---IAII----TNIGDSHLEKLKTKEGILKAKMEIVEGL--SQDGYFIYNGDDPTMKKEI 236

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            ++    +++S G +     + K  +  N+ +V+ + +G+   +  PL G   +YN  V 
Sbjct: 237 SSYEVKQKMISFGEEDDNDFVVK-SSDDNRGKVSFTHDGE--TYTIPLLGSHNIYNGGVT 293

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGR---FEFVG 350
             +   +G+ +  + + L ++     R    EF G
Sbjct: 294 VLVSSLLGLSTDQIKKGLSEVTPANNRSSIIEFEG 328


>gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
          Length = 438

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 160/376 (42%), Gaps = 41/376 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
             + +  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + 
Sbjct: 3   LKINFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID 62

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
           +       + P++ V++T   L   A + Y +H    ++AVTG++GK++    ++ +   
Sbjct: 63  E-----NVSGPVIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH- 115

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR 198
              + F++  T        +N +  P        L+ L     T +S+ E    G   H 
Sbjct: 116 ---TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HE 158

Query: 199 LDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYS 253
           ++ +  +A       TN+G  H+    +++    AK  +   L  K++   IY  D+   
Sbjct: 159 IEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLL 216

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQ 311
           K  +K   NA C  + V           VC++ ++    IS  +  K+  +  P+ G+  
Sbjct: 217 KPHVKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHN 270

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+  
Sbjct: 271 MKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRA 330

Query: 372 ILKNIRTITSGRIIVV 387
            +  + T+T  RI+++
Sbjct: 331 AIDTLSTLTGRRILIL 346


>gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Photorhabdus asymbiotica]
          Length = 459

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 172/388 (44%), Gaps = 60/388 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +V++D+R ++ G +F+A+ G + D H F   A+  GA A++VS   ++         N
Sbjct: 30  IRDVTTDNRKVENGSLFIALKGERFDAHDFSADAVKAGAGALLVSRVLAI---------N 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV++TR  +   A  +  +    ++A+TG+SGK+SV      I ++ G + +  G 
Sbjct: 81  CPQVVVEDTRLAMGKLAGWVRQQSKARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGN 140

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGS 208
                    +N +  P  ++       L+ Q    V    +SH G   + ++ ++     
Sbjct: 141 L--------NNDIGVPLTLF------RLTEQHEFAVVELGASHVGEIAYTVEMVRPETAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKEV--------- 256
             NL   H+    +  +   AK  +F   LP++  AII     D AY ++V         
Sbjct: 187 VNNLFAAHLADFGSLASIAKAKGEIFTG-LPEKGTAIINVESNDWAYWQQVIGDKTVQRF 245

Query: 257 -MKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            M++A  A        +    I +K++     +H     T        +   PLPG+  V
Sbjct: 246 SMQQASGA-------DFYATDIQVKQLTTDFCLHTPIGST--------EINLPLPGKHNV 290

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLE 370
            NAL A+ L I++G     +   L +L  VPGR   +  N   G++ +D  + +N  S+ 
Sbjct: 291 ANALAASALAISVGATLRDIRLGLSELRAVPGRLFPI--NLAEGKLLLDDTYNANVGSMT 348

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGK 398
           + ++ +  +   R++VV   G   +Q +
Sbjct: 349 VAVQVLSQMPGYRVMVVGDIGALGEQSE 376


>gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 468

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 153/373 (41%), Gaps = 38/373 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W +  +  V+ DSR +QAG +F+ ++G   DGH +I  AI  GA A + +S     D + 
Sbjct: 27  WPDVNVTGVAFDSRKLQAGDLFIPLMG-ANDGHQYIQSAIEHGAVATLWAS-----DHAD 80

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P+++V +T   L         K    ++AVTG++GK++    +  +       S
Sbjct: 81  DVPEDLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVL------S 134

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIK 203
            Q   T T ++F  +N++  P        ++ LS +  T V V     G+D    LD + 
Sbjct: 135 TQFNVTKTHANF--NNQIGVP--------VTLLSMEPNTEVVV--VEMGMDHFGELDFLS 182

Query: 204 LI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            +        T +G  HI++  T+    +AKM +   L  KE    I+  D     + +R
Sbjct: 183 RLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGL--KEDGTFIFNGD--EPLLQER 238

Query: 260 AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A        + G      +    +     + Q   S+   D  +  P+ G + V NAL A
Sbjct: 239 AKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSL-WPDNTYTIPMMGAYNVNNALAA 297

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             +     I  A   + +        R E++ T  RG  I  D Y     +   +L    
Sbjct: 298 LLVADTFHIRPAAAQQAIASFVPTENRTEWL-TGYRGEAILSDVYNSNPTAARRVLAAFA 356

Query: 378 TI-TSGRIIVVFG 389
            + T G+ I V G
Sbjct: 357 AVPTKGQRIAVLG 369


>gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71900698|ref|ZP_00682821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
 gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
          Length = 468

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 17/245 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V       D       
Sbjct: 23  RVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD------- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I + +   S  + 
Sbjct: 76  -VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTV- 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                SS  ++N +  P  +  A       +       + A   G   +  D +      
Sbjct: 134 --VYASSGNRNNEIGLPLAVIAAP-----DNADFAVYEMGAGKLGDIGYLTDIVTPDVAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H++   +       K  ++  L P  + A+I  DDA++    ++   AGC VL
Sbjct: 187 VNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVPAGCAVL 245

Query: 269 SVGYQ 273
             G Q
Sbjct: 246 RFGLQ 250


>gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 476

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 160/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F AI G + DGH F+  A+A GA  +VV+  + L  F     S 
Sbjct: 27  ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTSAMAAGAGLLVVAE-HRLPAFG---NSK 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L+        +    I+AVTG+ GK++    ++ +    G        
Sbjct: 83  VPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTKEALRHVLSEVGKVH----- 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++++SF  +N      P+ LA+ +   +  GV  + +  + H   +  +  ++      
Sbjct: 138 -ASVASF--NNHWGV--PLTLAR-MPADTDYGVFEIGM--NHHDEIRPLVKMVRPHVALI 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   K++ + A  AG   ++
Sbjct: 190 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFKQLEELAEKAGVEHIA 248

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 249 TFGENARSDYRLREVKLHPTCSC-----MTVKIGTHEAAVKVGMPGRHIVQNMLAVLGAA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379
             +G D A V+  +  L    GR    V  +  G    +D ++ +N  S+   L  + + 
Sbjct: 304 DLVGADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHST 363

Query: 380 TS----GRIIVVFG 389
           T     GR I V G
Sbjct: 364 TPEGSRGRRIAVLG 377


>gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
 gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
          Length = 378

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 160/372 (43%), Gaps = 39/372 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL-QDF 82
           Q+    IN V+ DSR+I+   +F+   G   DGH F+ QA+  GA A        L +D 
Sbjct: 20  QYLSHSINGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELNEDI 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                   PI+ V++T K L   A          ++AVTG++GK++    ++ +      
Sbjct: 80  EG------PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLT---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGMP--------LTILDLDEDTEISILEMGMSGF--HEIEL 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  IA       TN+G  H+    +++    AK  +   L  KE+   IY  D+   K  
Sbjct: 176 LSSIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KENGTFIYDGDEPLLKSH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNA 315
           +++ + A  R++SVG  G    L  VC + + +   I+    D + F  P+ G   + NA
Sbjct: 234 LEQLNKA--RLISVGL-GNSNTL--VCHVDDIETEGIAFTINDKESFTLPILGTHNMKNA 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +A  +   +G+    + +++  + +   R E   T +    I   Y  +  S++  +  
Sbjct: 289 TIAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDT 348

Query: 376 IRTITSGRIIVV 387
           + ++   +I+++
Sbjct: 349 LSSMEGRKILIL 360


>gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 453

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 165/376 (43%), Gaps = 58/376 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I E+  DSR ++ G +FVA+ G + DGH F  +A + GA  ++      ++         
Sbjct: 24  ITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEAQSHGAVGLLSECLLPIK--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +TRK L   A+ +  +    ++A+TG+SGK+SV      I ++SG   +  G 
Sbjct: 75  LPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSGKTSVKEMTAAILRQSGHVLYTKG- 133

Query: 150 TSTISSFAQDNRLTTP------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                +F  +NR+  P      +P +    L   +SQ        A S      R + + 
Sbjct: 134 -----NF--NNRIGVPLTLLRLTPEHDFAVLELGASQPGDIADTAALS------RPENVL 180

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKEVMKRA 260
           +     TNL + H+    + +    AK  +   L P  + AII+A   D    K V +  
Sbjct: 181 I-----TNLAQAHLSGFGSLKGVAKAKGEILTALAPTGT-AIIHATSHDWPKWKSVFR-- 232

Query: 261 HNAGCRVLSVGYQ-GKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              G R+   G + GK +     HL K+    +    T+           PLPG   V N
Sbjct: 233 ---GKRLWRFGLEKGKEVDFFASHLSKMPLATD---FTLHSPLGSQKIYLPLPGLHNVLN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           AL A+ L I++G D + + + L +L  VPGR F  +      G++ +D  + +N   MI 
Sbjct: 287 ALAASALAISVGADLSAISKALSELKPVPGRAFPMI---LGPGKLLLDDTYNANVGSMIA 343

Query: 374 KN--IRTITSGRIIVV 387
               +  +   R++VV
Sbjct: 344 ATEMMSNMPGYRVMVV 359


>gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 458

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum WCFS1]
 gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
 gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum WCFS1]
 gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
          Length = 462

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 153/373 (41%), Gaps = 38/373 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W +  +  V+ DSR +QAG +F+ ++G   DGH +I  AI  GA A + +S     D + 
Sbjct: 21  WPDVNVTGVAFDSRKLQAGDLFIPLMG-ANDGHQYIQSAIEHGAVATLWAS-----DHAD 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P+++V +T   L         K    ++AVTG++GK++    +  +       S
Sbjct: 75  DVPEDLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVL------S 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIK 203
            Q   T T ++F  +N++  P        ++ LS +  T V V     G+D    LD + 
Sbjct: 129 TQFNVTKTHANF--NNQIGVP--------VTLLSMEPNTEVVV--VEMGMDHFGELDFLS 176

Query: 204 LI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            +        T +G  HI++  T+    +AKM +   L  KE    I+  D     + +R
Sbjct: 177 RLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGL--KEDGTFIFNGD--EPLLQER 232

Query: 260 AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A        + G      +    +     + Q   S+   D  +  P+ G + V NAL A
Sbjct: 233 AKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSL-WPDNTYTIPMMGAYNVNNALAA 291

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             +     I  A   + +        R E++ T  RG  I  D Y     +   +L    
Sbjct: 292 LLVADTFHIRPAAAQQAIASFVPTENRTEWL-TGYRGEAILSDVYNSNPTAARRVLAAFA 350

Query: 378 TI-TSGRIIVVFG 389
            + T G+ I V G
Sbjct: 351 AVPTKGQRIAVLG 363


>gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri VA-6]
          Length = 452

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 138/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIARTVSLTRPE---- 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
              A    NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 178 ---AALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGMEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
 gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
          Length = 458

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 130/309 (42%), Gaps = 49/309 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++D+R IQ G +F+A+ G   DGHLFI +AI +GA  +++          A + S 
Sbjct: 29  IKVINTDTREIQKGDVFIALSGKNFDGHLFIREAIEKGASIVILEQ-------EALVNST 81

Query: 90  TPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             +  +VV +  K     A+    K+   I+A+TG+ GK++    +       G    Q+
Sbjct: 82  YKVSHIVVGSALKAYQQIANWWRNKYKIPIIAITGSVGKTTTKELIAASLGMYG----QV 137

Query: 148 GPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKL 204
             T        +N +  P  +  L+K   Y          +E     L++ RL    I+ 
Sbjct: 138 HKTYD----NYNNEIGVPRTLLKLSKHHDY--------AVIEMGMRDLEEIRLLTKIIQP 185

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI    +++A   AK  L  E +  +S AI+  DD    +   R     
Sbjct: 186 TIGIITNIGTAHIGRLGSKEAIAQAKCELLSE-MSLDSIAILNNDDELLMKTAMRIWKG- 243

Query: 265 CRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            + ++ G       GK I+ +           T+ VEG   +F  PL G     N L A 
Sbjct: 244 -KTITYGLNKGDIIGKLINDR-----------TLRVEG--LNFPLPLSGRHNAINYLAAL 289

Query: 320 GLCIAIGID 328
            +  ++ +D
Sbjct: 290 AVTKSLNLD 298


>gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 467

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 138/312 (44%), Gaps = 39/312 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  VS+DSR I  G +++ +VG   DG +FI +   +GAEA ++     +   + T+  
Sbjct: 34  KIKGVSTDSRTIDPGELYIPLVGEVFDGRIFIKECEDKGAEAFIIDDPTKI---NKTV-- 88

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141
           + P + V +T+K L   A+    +    ++ +TG++GK++    + +I        +  G
Sbjct: 89  SIPYVRVADTKKALQDLATAYRKELSCKVIGITGSNGKTTTKDLLYKILSEKYKTQKTCG 148

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + +IG   T+ S   D  +          A+  L +     +S+  +S  +  H    
Sbjct: 149 NLNNEIGVPKTVLSLDPDTEV----------AIIELGTDNFGDISL--TSRMVKPH---- 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRA 260
           I +I    TN+G  H+   +T+     AK+ + E +  ++    IY  DD   KE +   
Sbjct: 193 IAMI----TNIGDAHLHNLKTRSGILKAKLEILEGM--EDDGIFIYNIDDPTMKEEIP-T 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           ++   +VLS G   K    K V        +  S E   F+   PL GE  +YNA     
Sbjct: 246 YDIKQKVLSFGRSDK-ADFKIVFEKSPTSIIRFSHENDHFE--VPLMGEHNIYNAAAVVM 302

Query: 321 LCIAIGIDSALV 332
           +   +G++  ++
Sbjct: 303 ISEMLGLNKEMI 314


>gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 477

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 153/375 (40%), Gaps = 40/375 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR ++ G +FVAI G + DGH FI  A   GA   +VS  Y+ Q     + ++
Sbjct: 31  VTGVSIDSRTVERGDLFVAIKGERSDGHRFITAAFDNGAAGALVSRDYAPQ---VPLAAD 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+  VD+    L         +    I AVTG+ GK++    ++ +   S       GP
Sbjct: 88  EPLFRVDDPFAALEELGRVARARTDARIAAVTGSVGKTTTKEMLRVMLGES-------GP 140

Query: 150 T-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T +++ S+  +N +    P+ LA+ +   S  GV  + +  +   +   +L  ++     
Sbjct: 141 THASVKSY--NNFMGV--PLSLAR-MPAASRFGVFEIGMNHAGEIVPLAKL--VRPHVAI 193

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +   HI++  ++     AK  +FE  L +   AI+ AD+ + + +   A     RV+
Sbjct: 194 VTWVAPVHIEFFTSEAEIARAKAEIFEG-LEQGGAAILPADNPHFESLAAFARERSARVV 252

Query: 269 SVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             G     + + +  ++         VT  +  +   F    PG     NA+ A      
Sbjct: 253 PFGLSSEAEARLVSFERT---EEGSVVTADIFDQRVTFALAAPGRHLAQNAVAALAGVSL 309

Query: 325 IGIDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEM-----ILK 374
           +G +       L +     GR     FE      RG  + +D ++ +N   M     +L 
Sbjct: 310 LGGNVEAAAAALARFEAPEGRGRSATFE----TPRGPVLVIDESYNANPASMHAALDVLG 365

Query: 375 NIRTITSGRIIVVFG 389
            +      R I V G
Sbjct: 366 AVPPSRYARRIAVLG 380


>gi|332981725|ref|YP_004463166.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
 gi|332699403|gb|AEE96344.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
          Length = 879

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 31/323 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I++VTG++GK++    +  + +  GL+   +G T+T   +  D  +        A A   
Sbjct: 482 IVSVTGSNGKTTTVRIIAHMLRTQGLN---VGMTTTGGIYINDECIMKGDTTGPASAQII 538

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234
           LS + V    +E +  G+ +  L       G  TN+  DH  ID   T +   + K  L 
Sbjct: 539 LSDKSVEAAVLETARGGIIRSGLGYDLSDVGVITNITGDHLGIDGIHTLEDMLHVK-SLI 597

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-----AIHNKQ 289
            E +     A++ ADDA S +  +R     C ++   +    I ++        A++ K 
Sbjct: 598 VEAVKDNGYAVLNADDAISVQAARRVR---CNLIYFSFNQNNILIQHQIDNGRPAVYLKD 654

Query: 290 QVTISVEGKDFDFLFP---LPGEFQ---VYN-----ALVAAGLCIAIGI---DSALVLEH 335
              +  +G++   +     +P  ++    YN     A VAAG  I + +   + AL   +
Sbjct: 655 DYIVLFDGENIYNVIAVDEIPATWEGKLTYNIENSMAAVAAGYGIKVPVSVMEKALRTFY 714

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
            + L   PGRF     N R  R+ VDYAH   S + ++  ++ +   R+I V G  GDR 
Sbjct: 715 SDSLQN-PGRFNIF--NVRDFRVIVDYAHNVESYKSVISALKQMNPARLIGVIGAPGDRR 771

Query: 396 QGKRPIMGKIALDLADIAIVTDD 418
                 MG+IA    D  I+ +D
Sbjct: 772 DEDIIEMGRIAGYGFDRIIIKED 794


>gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 471

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 136/335 (40%), Gaps = 57/335 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R I    +F+A+ G   DGH FI  A   GA A++VS           + + 
Sbjct: 30  IQGVSTDTRQINPDDLFIALSGPNFDGHKFIDTAAQGGAVAVIVSR---------KVDTE 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              ++V +T++ L      +  +     +A+TG+SGK++V   V  I  R G        
Sbjct: 81  LAQILVSDTKEALGRLGQAIKREVAPKTVAITGSSGKTTVKEMVAAILSRRG------KV 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +T  +F  +N +  P  +     L   +      V + A+  G   +  + +K    + 
Sbjct: 135 LATKGNF--NNDIGVPLTL-----LRLEADHEFAVVELGANHLGEIAYTTELVKPDVATI 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N    H++   +      AK  +F+  L K+  AI  AD  +                 
Sbjct: 188 VNAAAAHLEGFGSLLGVARAKSEIFKG-LGKDGLAIFNADSQF----------------Y 230

Query: 270 VGYQGKFIHLK------KVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQV 312
             + GK+ HL+      K  A +  Q V + + G   DFL            PLPG   V
Sbjct: 231 AFWHGKYEHLRNQAFSTKDEADYYAQDVVLGLNGCA-DFLMVTPLGKVSISLPLPGLHNV 289

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            NALV+A L I +G +   V   L+ +  V GR +
Sbjct: 290 SNALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQ 324


>gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 454

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 166/406 (40%), Gaps = 55/406 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSN 89
           N++S+D+R I+   +FVA+ G   +G+ +   AI +GA  ++V    +  +D    ++S 
Sbjct: 26  NKISTDTRKIENDNLFVALKGANFNGNTYAVSAIEKGASVVIVDEIKFEKED----LKSK 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T+  L   A     K    ++ +TG++GK+S    +         ++F  G 
Sbjct: 82  GTVIKVKDTKVALGDLARYYRKKLGIKVVGITGSTGKTSTKDLI---------AAFLSGK 132

Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL--IA 206
                +    +N +  P  I+            V  + +  S+ G + + L GI L  IA
Sbjct: 133 YKVFKTQGNFNNEIGLPLMIF-----ELNKDYDVAVLEMGTSNFG-EINTLAGIALPDIA 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            + TN+G  HI+Y +T++     KM +  +    +S  +I  ++   K V    H     
Sbjct: 187 -AITNVGVAHIEYLKTRENILKEKMSI-SDFFKDDSCLVINCENDMLKTVKDEDH-KNIN 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQVYNALV 317
           +   GY   +    K         + ++ E   FD         F   + GE  V NAL 
Sbjct: 244 IQRTGYDKSYNLYAK--------NIELTSETTSFDAVYKDECHRFNLNMVGEHNVLNAL- 294

Query: 318 AAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
              L I I  D  L  E +EK          R EF+  N +   I   Y    +S++  +
Sbjct: 295 ---LGIQISKDLGLKFEEMEKGLDNFKATSMRLEFIKHN-KFTIINDSYNANPDSMKAAI 350

Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             +++ T  R I V G     GD        +G+ A   ADI + T
Sbjct: 351 NVLKSYTGDRKIAVLGTMGELGDYANIAHKEVGEFAKGKADILLTT 396


>gi|154488876|ref|ZP_02029725.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
 gi|154083013|gb|EDN82058.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
          Length = 517

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 200/470 (42%), Gaps = 42/470 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +   + ++ D+R ++ G  F+   G  +  +L       QG +   +++  S  DFS   
Sbjct: 38  DEPFSAITYDTRKVEPG-TFLCCKGRFKAEYL-------QGIDERGLAAYVSENDFSDAT 89

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG--TSGKSSVASFVQQICQRSGLSS 144
           ++  P L+VD+ RK ++L ++  YG+ P++ L V G   +   +  +++ Q    +G S 
Sbjct: 90  QA--PGLIVDDVRKAMALLSAEFYGR-PQDQLKVVGITGTKGKTTTAYLTQ-AMLNGCSG 145

Query: 145 FQIGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            +    S++ +        ++ LTTP  +   + +      G+ ++ +E SS      R+
Sbjct: 146 GKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDNGMEYLVMEVSSQAYKVDRV 205

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            G+     +F N+  DHI    H T + Y + K ++ +         ++ AD A +  + 
Sbjct: 206 FGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNC----RALVLGADCARADLIR 261

Query: 258 KRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNA 315
           + A +A   V +    G     +    A  +  + +I ++G    +    L G+F   N 
Sbjct: 262 QDARHASVPVTTFALGGDSTADVMAAPANDDHSRFSIVIDGASIGELSLTLDGDFNYANT 321

Query: 316 LVAAGLCIAIGID--SALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             A  +  A G D  SA   + L ++  V   GR E            VDYAH   S+  
Sbjct: 322 AAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNTIAIVDYAHNYASVTA 381

Query: 372 ILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +L  +          I ++ G  G++   +R  +   A D  D  ++T ++   E  E++
Sbjct: 382 LLDYVDQRYGSEKPEITLITGSAGNKAYDRRAEIVHAAQDRIDHLVLTFEDTDDEPVEQV 441

Query: 429 RAEIIHGI--PGFIEKG--NRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470
            A++   +  P    K   +R EA+ T +    K      ++++ GKG+E
Sbjct: 442 CADMNDSVTNPQLDVKTILDRAEAVETTVSRDRKDPEHLHIILIIGKGNE 491


>gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
 gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
          Length = 454

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R I  G +FVA+VG + D H F  QA+  GA A++V     +         N
Sbjct: 24  IDAVSTDTRTIDRGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRLDV---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P +VV +T+  L  FAS ++       +A+TG+ GK++V   V  I Q  G   F  G
Sbjct: 75  VPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133


>gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
 gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
          Length = 453

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 163/379 (43%), Gaps = 49/379 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  + I  V+ DSR I+   +F+   G   DGH F+ QA+  GA A     ++  +D S
Sbjct: 20  QYFHQSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGA-----SFYQKDVS 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  PI+ VD+T + L   A          ++AVTG++GK++    ++ +      +
Sbjct: 75  LPKDIEGPIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIECVLN----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202
            F +  T        +N +  P        L+ L     T +S+ E    G   H ++ +
Sbjct: 131 EFNVKKTQG----NYNNEIGMP--------LTILDLDKNTDISILEMGMSGF--HEIELL 176

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257
             IA       TN+G  H+    +++    AK  +   L  K +   IY  D+   K  +
Sbjct: 177 STIAEPDIAVITNIGESHMQDLGSREGIAQAKSEITIGL--KSNGTFIYDGDEPLLKPHV 234

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEF 310
           ++   A C  +S+G  QG  +    VC+++++    +  EG  F      ++  P+ G  
Sbjct: 235 EQIKEAKC--ISIGLEQGNSL----VCSVNDQ----VETEGIAFTINHQQEYELPILGIH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA +A  +   +G+    +  +++++ +   R E   T  +   I   Y  +  S++
Sbjct: 285 NMKNAAIAIAVGQELGLSYKTIQHNIKRVKLTGMRMERHETEQQVTVINDAYNASPTSMK 344

Query: 371 MILKNIRTITSGRIIVVFG 389
             +  +  + +GR I+V G
Sbjct: 345 AAIDTLSNM-NGRKIIVLG 362


>gi|302518532|ref|ZP_07270874.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB78]
 gi|302427427|gb|EFK99242.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB78]
          Length = 144

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 11/131 (8%)

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+++R +T GR+ VV GCGG RD  KR  MG  A  LAD A++T DNPRSEDP  I A 
Sbjct: 1   MLRSLRRVTEGRVHVVLGCGGARDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLAILAA 60

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQ------DVLVVAGKGHETVHIVTNGEKKM 482
           ++ G   +P   E+G+ +     A  +          D +++AGKGHE    V NG  + 
Sbjct: 61  MLAGAAEVP-VHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHEQGQDV-NGVVRP 118

Query: 483 SVDCDIIREIL 493
             D ++++E +
Sbjct: 119 FDDREVLKEAI 129


>gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 451

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 162/369 (43%), Gaps = 36/369 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ IN VS DSR I  G +F+   G   DGH FI QA+  GA A+     +S ++   + 
Sbjct: 23  KKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENKHSE 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  PI+ V++T   L   A          ++AVTG++GK++    ++ +      + F+
Sbjct: 78  GNQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----TEFK 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T        +N +  P        L+ L     T +S+ E    G   H+++ +  I
Sbjct: 134 VKKTQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELLSHI 179

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260
           A       TN+G  H+    +++    AK  +   L  K +   IY  D+   K  + + 
Sbjct: 180 AQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHVNQV 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA  +++S+G      +   +  + N + +  ++  K+  +  P+ G   + NA +A  
Sbjct: 238 KNA--KLISIGLNSDSTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAIAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G++  ++  ++  + +   R E   +++    I   Y  +  S++  +  + ++ 
Sbjct: 294 IGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTL-SVM 352

Query: 381 SGRIIVVFG 389
            GR I++  
Sbjct: 353 KGRKILILA 361


>gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 457

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 141/338 (41%), Gaps = 37/338 (10%)

Query: 24  QWRERKINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           Q ++  +NEVSS   D+R ++ G +F A+ G   D + F+ Q  A+ A A+VVS   S  
Sbjct: 17  QVQKGSVNEVSSVCTDTRRLKPGELFFALKGENYDANDFVEQGKAKQAAAVVVSRVLS-- 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
                + S T +L V ++ K L   A   Y +   NI  + VTG++GK+S    +  +  
Sbjct: 75  ----AVNSGTAVLQVQDSLKALQALAR--YNRQLFNIPVIGVTGSNGKTSTKDMIASV-- 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                   +   +  +S   +N +  P  +     LS  SS     V +     G     
Sbjct: 127 ------LGVRYKTLKTSGNYNNEIGLPLTL-----LSMDSSHQTAVVEMAMRGRGEIDFL 175

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +      T +G  H++   +++    AK  + + + P +  A++  + + ++++  
Sbjct: 176 CQLARPTGAVITCIGEAHLELLGSRENIAAAKGEMLQHIGP-QGFALLSGNSSLTRQL-- 232

Query: 259 RAHNAGCRVLSVGYQGKFIHLK-KVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYN 314
               AG     V + G    L  + C I    N  + T+       D   P+PG   + N
Sbjct: 233 ----AGLTAGKVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQEDIFLPIPGRHNIIN 288

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +L A G+ + +G+    +   L ++ +   R E +  N
Sbjct: 289 SLAAVGVGLELGLSLPEIKAGLAEVVLTGMRMEIIKIN 326


>gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 461

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 133/327 (40%), Gaps = 36/327 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +S+D+R +    +F A+ G   D H ++ +A+AQGA A+VV    S  D       
Sbjct: 24  EVENISTDTRKMVVNSLFFALKGENFDAHHYLDKAVAQGAVALVVQKINSHLD------- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV++T+  L   A  +       ++A+TG+SGK++V      I Q+S ++S    
Sbjct: 77  -VPQLVVEDTKIALGELAKWVRETVNPLVVAMTGSSGKTTVKEMTASILQKSAVNS---- 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T   +    +N +  P  +     L          + + A+  G   +     K     
Sbjct: 132 DTVLFTEGNFNNDIGVPLTL-----LRLTPEHQFAVIELGANHQGEIAYTTSLAKPDVAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H++   + +    AK  ++   LP    AII  +  YS   +K A   G R +
Sbjct: 187 VNNVAAAHLEGFGSIEGVAQAKGEIYRG-LPASGVAIINKEHNYS---IKWAQEIGERAI 242

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQVYNALVAA 319
                 ++   +   A      V  +  G +F+   P       LP  GE  V NAL A 
Sbjct: 243 ------QYFAYQDATADFYADNVQFNESGSEFELHTPQGQIHISLPYLGEHNVKNALAAT 296

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346
            L + +G     V + LE    V GR 
Sbjct: 297 ALAMNVGASLTQVKKGLEMRSQVKGRL 323


>gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
 gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
          Length = 477

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 26/368 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F AI G++ DGH +   A+A GA  +VV+ A       A  R  
Sbjct: 26  ITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANGASLLVVAEA----KLPALGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++    L   A     +    I+AVTG+ GK++    ++Q    SG        
Sbjct: 82  VPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKTTTKEMLRQALAPSGRVH----- 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + ++SF  +N    P  + LA+ +   +  GV  + +  S  G  +  +  ++      
Sbjct: 137 -AAVASF--NNHWGVP--LTLAR-MPADTEFGVFEIGMNHS--GEIRPLVKMVRPHVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268
           T +   H+   +  +    AK  +FE +    S  I+  D+A  +++ + A  AG   +L
Sbjct: 189 TTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGS-VILNRDNAQFEQLEEAAQEAGIEHIL 247

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G   K    L    +      +   + G+  +    +PG     NA+   G     G 
Sbjct: 248 TFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPGRHIADNAMAVLGAVAVTGA 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM-----ILKNIRTITS 381
           +    LE L  L  V GR +       GG  + +D ++ +N   M     +L    T   
Sbjct: 308 NLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVLAETETQGH 367

Query: 382 GRIIVVFG 389
           GR + V G
Sbjct: 368 GRRVAVLG 375


>gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 466

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 60/311 (19%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIRSNT 90
           +++D+R+++ G IF+A+ G   DGH +   AI +GA A++ +    Y LQD         
Sbjct: 33  ITTDTRNLEPGQIFLALRGETFDGHDYAEVAIKKGAIAVIANRDQGYHLQDI-------- 84

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L VD+T +     A     +    ++AVTG++GK++    +  +    G         
Sbjct: 85  PQLQVDDTLQAYQQLARWWRDQFDIPVIAVTGSAGKTTTKELIAAVLSTQG--------- 135

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206
           + + + A  N     + I + K L  L S    +  +E +  G  Q  L  +  IA    
Sbjct: 136 NILKTQANYN-----NEIGVPKTLLELDSNH-DYAVIEMAMRGSGQIAL--LTQIARPTI 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVM 257
           G  TN+G  HI    ++ A   AK  L  + +P  S AI+  D+          +  E +
Sbjct: 188 GVITNVGTAHIGLLGSEDAIAKAKCELLAQ-MPDTSMAILNHDNQRLMDTAATVWQGETL 246

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N G        QGK I L ++            V+G    F  PLPGE    N L 
Sbjct: 247 TFGLNGG------DVQGKLIDLFRLM-----------VDG--ITFPLPLPGEHNALNYLA 287

Query: 318 AAGLCIAIGID 328
           A  +   + ID
Sbjct: 288 ALAVAKHLQID 298


>gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
 gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
          Length = 456

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 161/377 (42%), Gaps = 44/377 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W +  I  V  DSR I++G +F+ +V  + DGH ++  AI  GA A +       +D S
Sbjct: 19  EWEDISITSVCFDSRKIESGALFIPLVA-ENDGHKYVEAAINGGAVATLWQ-----EDHS 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             I  +  +L V +T   L         K    ++A+TG++GK++       +       
Sbjct: 73  ENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           + Q     T ++F  +N +  P        ++ LS +  T V V     G+D++ +LD +
Sbjct: 127 ATQFNVHKTFANF--NNEIGVP--------MTILSMEPNTEVLV--VEMGMDRYGQLDFL 174

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             +A       T +G  HI++  T+    +AKM +    L ++   +I  D+     +  
Sbjct: 175 SKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHG-LKEDGELVINGDEPL---LTT 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCA---IHNKQQVTISV-EGKDFDFLFPLPGEFQVYN 314
           +A      VL+ G     +    +CA   + +  + +  V    + DF   + G + V+N
Sbjct: 231 KAKEVSQEVLTFGS----LDNNDMCAMDIVSDATKTSFKVATWPEVDFTINMIGAYNVFN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           AL A  +     I    + + L    +   R E++   + G +I  D Y     +++ +L
Sbjct: 287 ALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKN-GAKILSDVYNSNPTAVKEVL 345

Query: 374 KNIRTI-TSGRIIVVFG 389
                + T G+ I+V G
Sbjct: 346 YAFEQVPTEGKRIIVLG 362


>gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Pantoea ananatis AJ13355]
          Length = 452

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N+V++D+R + AG +FVAIVG + D H F   AIA+G +A++VS    +         +
Sbjct: 24  LNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGVKALLVSKHLPV---------S 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P +VV +TR      A+ +  +    ++A+TG+SGK+SV      I ++ G
Sbjct: 75  VPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTASILRQCG 126


>gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)]
 gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces lividans TK24]
 gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
 gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           coelicolor A3(2)]
 gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
          Length = 471

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 36/234 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR    G +FVA VG + DGH F  + +  GA A++ S    +           P 
Sbjct: 31  VVRDSREAGPGSLFVAFVGERADGHDFAARVVEAGAVAVLGSRPVGV-----------PA 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+ +  L   A  +  +    ++A+TG++GK+S    + Q+ +R   + F  G    
Sbjct: 80  IVVDDVQAALGALARHVVRRLGTTLVALTGSAGKTSTKDLIAQVLRRKAPTVFTPG---- 135

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR----LDGIKLIAG 207
               + +N +  P        L+ L++   T   V E  + G+   R    L   K+  G
Sbjct: 136 ----SMNNEVGLP--------LTALTATDETKFLVLEMGARGIGHIRYLTELTPPKI--G 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKR 259
           +  N+G  HI     ++    AK  L E L P E    AI+ ADD   + +  R
Sbjct: 182 AVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEEGGAAILNADDPLVRAMASR 235


>gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 452

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +    
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 130

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T S+F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 131 --TASNFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G   A V   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
 gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
          Length = 452

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|187926156|ref|YP_001892501.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|241665644|ref|YP_002984003.1| cyanophycin synthetase [Ralstonia pickettii 12D]
 gi|187727910|gb|ACD29074.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|240867671|gb|ACS65331.1| cyanophycin synthetase [Ralstonia pickettii 12D]
          Length = 855

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 166/393 (42%), Gaps = 46/393 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA    G+ P  ++AV+GT+GK++    +  +   SGL   ++G T T   + Q  R+
Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHLLASSGL---RMGMTGTDGVYIQGQRI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219
            T        A + L    V     E +  GL +  L   +      TN+G  DH+  +Y
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLNY 574

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-------EVMKRAHNAGCRVLSV-G 271
             T +     K  + + + P+    +  AD   ++        V   AH+ G   L++  
Sbjct: 575 ISTVEDLAVLKSVIVQNVAPRGMAVLNAADPMVARMAEGCPGSVTFFAHDPGLPTLALHR 634

Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIG 326
            QGK   F+   ++ A     +  I++     D      G   FQV NA+ +     A+G
Sbjct: 635 AQGKRVVFVDGPEIVAAEGANETRIALA----DIPLTRNGTIGFQVENAMSSIAAAWALG 690

Query: 327 IDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           ID  ++   L          PGRF     + +G  +  DY H  ++++ +   + T+ + 
Sbjct: 691 IDWTVIRRGLATFVNDAATAPGRFNLF--DYKGATLIADYGHNPDAIQALCNAVATMPAQ 748

Query: 383 -RIIVVFGCGGDRDQGKRP---IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R++V+ G G  RD+  R    I+G +     D+ +  D   R     ++ A +  G+ G
Sbjct: 749 RRMVVISGAGDRRDEDIRKQTQILGGV---FDDVVLYEDQCQRGRADGEVLALLREGLQG 805

Query: 439 FIEKGNRIEAIR-------TAIEMLNKQDVLVV 464
              + +R++ IR       TA+  L   D+ ++
Sbjct: 806 -ASRTSRVDEIRGEFLAIDTALGRLQPGDLCLI 837


>gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
 gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
          Length = 451

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 161/371 (43%), Gaps = 37/371 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    IN V+ DSR I+   +F+   G   DGH F+ QA+  GA A   S +    + S
Sbjct: 20  QYLSHSINGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQALKDGAGA---SFSEKGTELS 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             I    PI+ V++T K L   A          ++AVTG++GK++    ++ +      +
Sbjct: 77  EDIEG--PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLT----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202
            F++  T        +N +  P        L+ L     T +S+ E    G   H ++ +
Sbjct: 131 EFKVKKTQG----NYNNEIGMP--------LTILDLDEDTEISILEMGMSGF--HEIELL 176

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257
             IA       TN+G  H+    +++    AK  +   L  KE+   IY  D+   K  +
Sbjct: 177 SSIAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KENGTFIYDGDEPLLKPHL 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNAL 316
           ++ + A  R++SVG  G    L  VC + + +   I+    D + F  P+ G   + NA 
Sbjct: 235 EQLNKA--RLISVGL-GNSNTL--VCHVDDIETEGIAFTINDKESFTLPILGTHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + +++  + +   R E   T +    I   Y  +  S++  +  +
Sbjct: 290 IAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDTL 349

Query: 377 RTITSGRIIVV 387
            ++   +I+++
Sbjct: 350 SSMEGRKILIL 360


>gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
 gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
          Length = 452

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILNQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 451

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 162/369 (43%), Gaps = 36/369 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ IN VS DSR I  G +F+   G   DGH FI QA+  GA A+     +S ++   + 
Sbjct: 23  KKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENKHSE 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  PI+ V++T   L   A          ++AVTG++GK++    ++ +      + F+
Sbjct: 78  GNQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----TEFK 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T        +N +  P        L+ L     T +S+ E    G   H+++ +  I
Sbjct: 134 VKKTQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELLSHI 179

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260
           A       TN+G  H+    +++    AK  +   L  K +   IY  D+   K  + + 
Sbjct: 180 AQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHVNQV 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA  +++S+G      +   +  + N + +  ++  K+  +  P+ G   + NA +A  
Sbjct: 238 KNA--KLISIGLNSDSTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAIAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G++  ++  ++  + +   R E   +++    I   Y  +  S++  +  + ++ 
Sbjct: 294 IGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTL-SVM 352

Query: 381 SGRIIVVFG 389
            GR I++  
Sbjct: 353 KGRKILILA 361


>gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 463

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 33/365 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+DSR ++AG +FV + G + DGH FI QA+  GA A +     +           
Sbjct: 25  VTGVSTDSRSLRAGDLFVPLRGPRFDGHDFIAQAVQSGAVACLSEEVIA--------GLP 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V +T + L   A+ +       ++AVTG+SGK++    +      +G+ + +   
Sbjct: 77  VPVIRVTDTLRALGDLAAAVRQAFDGPVVAVTGSSGKTTTKEML------AGILALRGEG 130

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
             T  +F  +N +  P  ++  +A  + +   V  + + A     +  RL  I +   G 
Sbjct: 131 LKTEGNF--NNLIGLPHTLFRLEADHHWA---VLELGMSARG---EIARLAEISRPDIGV 182

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H++     Q    AK  LF   LP    A+I  DD     V++     G R L
Sbjct: 183 ITNVGPAHLETLHNLQGVARAKGELFAA-LPAGGTAVINGDD---PRVLQLPVANGVRRL 238

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G      +  + +    +     + + G+ +     +PG + V+NAL AA    A+ +
Sbjct: 239 IYGCGSDAEVRAEDIAVDGHGTHFCLLLAGESWPVHLSVPGRYNVHNALAAAAAAHALKV 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL--EMILKNIRTIT-SGRI 384
             A ++E LE      GR   V   + G  +  D+ + +N L  +  L  +  +  SGR 
Sbjct: 299 GGAQIVEGLEAFRSCAGRMA-VAELASGATLLEDF-YNANPLAVKAALSALDEMPGSGRR 356

Query: 385 IVVFG 389
           I V G
Sbjct: 357 IAVLG 361


>gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
 gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
          Length = 454

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 17  QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  I      +
Sbjct: 71  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 127 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 235

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 236 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V T+S
Sbjct: 290 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 325


>gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 468

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 31  QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 84

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  I      +
Sbjct: 85  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 140

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 141 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 192 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 249

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 250 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 303

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V T+S
Sbjct: 304 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 339


>gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 466

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 25/224 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F A VG + DGH +  QA+  GA A++      +           P +VV
Sbjct: 34  DSRQVKDGSLFAAFVGERVDGHDYADQAVRAGAVAVLAQRPVGV-----------PAIVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++ +  L   A  +  +    ++A+TG++GK+S    + Q+ +R   + F  G  +    
Sbjct: 83  EDVQTALGALARHVVRRLGATLVALTGSAGKTSTKDLIAQVLRRKAPTVFTPGSLNNEIG 142

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   T    +L   +  + ++G+ H+S          +  D      G   N+G  
Sbjct: 143 LPLTALTATEETRFL---VLEMGARGIGHIS----------YLTDLTPPKIGLVLNVGSA 189

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           HI     ++    AK  L E  LP E  AI+ ADD   + +  R
Sbjct: 190 HIGEFGGREQIAQAKGELVEA-LPAEGAAILNADDPLVRAMASR 232


>gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
 gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
          Length = 427

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 153/355 (43%), Gaps = 28/355 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R + AG +FVA+ G + DGH F   A+A GA A++VS           +    P LVV
Sbjct: 4   DTRKVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSK---------RLLVGAPQLVV 54

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +TR  L  FA+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G      +
Sbjct: 55  KDTRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAG------N 108

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F  D  +    P+ L   L          + + A+  G   +  D  +  +    NL   
Sbjct: 109 FNNDIGV----PLTL---LRLSPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAA 161

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQG 274
           H++   +      AK  +F   LP    AII AD        +  HN      S  G + 
Sbjct: 162 HLEGFGSLAGVAKAKGEIFAG-LPANGTAIINADSNDWPHWQEMLHNKRVWYFSPRGAED 220

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              +   V         T+           PLPG   + NAL A  L +++G D A V +
Sbjct: 221 IDFYASDVRITPQATHFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAAVRQ 280

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVV 387
            L +L  VPGR   +  ++  G++ +D ++ +N  S+    + +  +   R++VV
Sbjct: 281 GLAQLQAVPGRLFPIQLSA--GKLLLDDSYNANVGSMTAAAQVLAEMPGYRVLVV 333


>gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 497

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 129/305 (42%), Gaps = 53/305 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R +  G ++VA+ G + DGH F   A+AQGA  ++V     L   S      
Sbjct: 24  IDAVGNDTRTLANGSLYVALRGERFDGHDFAADAVAQGASGLLVDRL--LPALS------ 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V+NT   L+  A+ +       ++A+TG++GK+SV + +  I + +G      G 
Sbjct: 76  VPQVLVENTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLSILEEAGRVD---GT 132

Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193
           T   +   ++N +  P     +P      IY   A     ++YL+     HV++  +   
Sbjct: 133 TVYANPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RL       GS   + R       T+ A + A        LP +  A+I ADDA+ 
Sbjct: 193 AHLERL-------GSLLGVAR-------TKSAIYAA--------LPADGVAVINADDAFG 230

Query: 254 KEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGE 309
               ++ H     G RVL  G Q       +   + +   Q T+     +     PLPG 
Sbjct: 231 AWFEQQLHAQPVHGRRVLRYGLQASADLTARGLRLQDGGAQFTLVTPQGEAQIALPLPGR 290

Query: 310 FQVYN 314
             V N
Sbjct: 291 HNVLN 295


>gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 454

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 17  QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  I      +
Sbjct: 71  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 127 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 235

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 236 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V T+S
Sbjct: 290 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 325


>gi|19553357|ref|NP_601359.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390996|ref|YP_226398.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|21324927|dbj|BAB99550.1| UDP-N-acetylmuramate-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326335|emb|CAF20497.1| PROBABLE UDP-N-ACETYLMURAMATE--ALANINE LIGASE PROTEIN
           [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 33/289 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D+ +T +AYF    ++F++   + +P    ++  +D ++ E+ +R+   G +
Sbjct: 193 TNVEPDHLDFFKTPEAYF----QVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248

Query: 267 VLSVGYQGKFIHLKKVCA---------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            +  G         +V A         +    + TI+++G++   +  +PG+  V N   
Sbjct: 249 TVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAA 308

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSLEMIL 373
           A      +G D   ++E L     V  RFEF G        G  IY DYAH    +  +L
Sbjct: 309 ALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVL 368

Query: 374 KNIRT----ITSGRIIVVFG--CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-E 426
              RT       GR+IV F         + ++   G  AL LAD A+V +     E P +
Sbjct: 369 SAARTRVKAAGKGRVIVAFQPHLYSRTIEFQKEFAG--ALSLADAAVVLEIYGAREQPVD 426

Query: 427 KIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            + +EII     IP   E        R A E+    D+++  G G  T+
Sbjct: 427 GVSSEIITDAMTIPVVYEPNFSAVPERIA-EIAGPNDIVLTMGAGSVTM 474


>gi|325265594|ref|ZP_08132285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
 gi|324982942|gb|EGC18563.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
          Length = 445

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 113/263 (42%), Gaps = 40/263 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L  + P+ I+A+TG++GK++  S V  +C + GL +   G   T    A   R   P+ +
Sbjct: 102 LLSRQPDKIIAITGSNGKTTTTSLVGHLCAQCGLDTVVAGNIGTPVLEAWLARKGKPADV 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           ++                +E SS  L+   L  +   A +  N+  DH+D +     Y  
Sbjct: 162 WV----------------LELSSFQLETTPL--LDADAAACLNISEDHLDRYDDLLDYAR 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA 284
           AK  +F      ++  ++ ADDA+ +  MKR         +V Y    Q +  H +    
Sbjct: 204 AKDMIFN----GKAVQVLNADDAFCR-AMKRDGR------TVHYFSLQQPQDYHWQAGAG 252

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             + Q+V +  +        PL G   + N L A  LC +IG+    +L H++    +P 
Sbjct: 253 SLHHQEVLLMPQTD-----IPLQGSHNMANVLAALALCESIGLPRDRLLAHVKTFKGLPH 307

Query: 345 RFEFVGTNSRGGRIYVDYAHTSN 367
           R E VG   + G  ++D +  +N
Sbjct: 308 RVEKVG--EKNGITFIDDSKGTN 328


>gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU028]
          Length = 451

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 144/327 (44%), Gaps = 35/327 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ IN VS DSR I  G +F+   G   DGH FI QA+  GA A+     +S ++   + 
Sbjct: 23  KKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENKYSE 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  PI+ V++T   L   A          ++AVTG++GK++    ++ +      + F+
Sbjct: 78  GNQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----TEFK 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T        +N +  P        L+ L     T +S+ E    G   H+++ +  I
Sbjct: 134 VKKTQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELLSHI 179

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260
           A       TN+G  H+    +++    AK  +   L  K +   IY  D+   K  + + 
Sbjct: 180 AQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHVNQV 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA  +++S+G      +   +  + N + +  ++  K+  +  P+ G   + NA +A  
Sbjct: 238 KNA--KLISIGLNSDNTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAIAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +   +G++  ++  ++  + +   R E
Sbjct: 294 IGHELGLNETIIQNNIHNVQLTAMRME 320


>gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 442

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 159/376 (42%), Gaps = 56/376 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q   + +  VS DSR +++G +FVA+V  + DGH ++ QA+ +GA A++V   +      
Sbjct: 17  QIDSKIVTGVSFDSRKVKSGDLFVALVA-ENDGHDYVQQALTKGATAVLVDDRHQ----- 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
             I S  P ++V +T   L+L     Y +H  N  ++A+TG++GK++           S 
Sbjct: 71  --IDSKIPAIIVSDT--LLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMA------SA 120

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +   Q     T  +F  +N +  P        L+ L+    T V V     G+D  RL  
Sbjct: 121 IMGSQYKTFKTPENF--NNEIGVP--------LTLLTMPDDTEVLV--VELGMD--RLGQ 166

Query: 202 IKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +  ++          T +G  HI++ +T++    AK+ + + L  + +  I Y +   + 
Sbjct: 167 LTTLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLIPYDEPLLTN 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +K+       V + G   K I+      I   Q            F  PL G + + N
Sbjct: 227 AQVKQ------NVQTFGQDIKDINSSSSKTIFTYQNTR---------FAIPLLGRYNIMN 271

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           AL A    I + I+     E L+   +   R E + T S G  +  D Y     ++  +L
Sbjct: 272 ALAAISAGILLHIELKNAAEALQHFDLTKNRTEQL-TTSHGVNLISDVYNSNPTAVAAVL 330

Query: 374 KNIRTITSGRIIVVFG 389
             ++ I +    VV G
Sbjct: 331 ATLKIIPATHKYVVLG 346


>gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
 gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
          Length = 466

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 164/407 (40%), Gaps = 54/407 (13%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F    R  +I+ V  DSR I  G +FV + G   DGH +I +AI  GA    V++ +S  
Sbjct: 18  FTSTARFTEIDSVEFDSRLITPGALFVPLKG-ATDGHSYIDKAIENGA----VAALWSND 72

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA-------SFV 133
              A +    PI+ V++T   +  FA    G     ++ +TG+SGK++         S  
Sbjct: 73  PNEAPV--GFPIIQVEDTLVAMQAFAKAYLGWIKPKVVGITGSSGKTTTKDMTAAALSTA 130

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            ++ + +G  +  IG   TI    +D   +     +  A  +S+LS      V V     
Sbjct: 131 LKVHKTNGNYNNDIGLPKTILDMPEDTEVIVLEMGMSGAGEISFLSKLAEPDVVV----- 185

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                            T +G +HI++  +++    AK+ + + L  KE    IY  D  
Sbjct: 186 ----------------ITMIGENHIEFLGSRENIAKAKLEILDGL--KEEGTFIYPGDE- 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              V +   +     L++G             +   Q    +    +     PL G + V
Sbjct: 227 PLIVDQMPTDLKQSTLTIGLNDDHDIFAFDVMMDQFQSTFYTNLSPELKMEIPLSGGYNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVD-YAHTSNS 368
            NAL A G+  + G+    V  +L +  + P R    G+  RG    +I  D Y  + ++
Sbjct: 287 QNALYALGVAYSFGLSMEQVRPNLAEFSITPDR----GSWERGILDTQILNDTYNASPSA 342

Query: 369 LEMILKNIRTITS---GRIIVVFG----CGGDRDQGKRPIMGKIALD 408
           ++ +++N   I S    + I+V G     G   D+  R I   I L+
Sbjct: 343 MKAVIRNFSAIASKGMSQKILVLGDMLELGAFSDELHREIATVIGLN 389


>gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
 gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
          Length = 476

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 160/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F AI G + DGH F+  A+A GA  IVV+  + L  F     S 
Sbjct: 27  ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTAAMAAGAGLIVVAE-HRLPAFG---NSK 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L+        +    I+AVTG+ GK++    ++ +    G        
Sbjct: 83  VPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTKEALRHVLSEVGKVH----- 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++++SF  +N      P+ LA+ +   +  GV  + +  + H   +  +  ++      
Sbjct: 138 -ASVASF--NNHWGV--PLTLAR-MPADTDYGVFEIGM--NHHDEIRPLVKMVRPHVALI 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268
           T +   H+ +    +    AK  +FE ++P    A++  DD   K++ + A  AG   ++
Sbjct: 190 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFKQLEELAEKAGVEHIV 248

Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           + G      Y+ + + L   C+      +T+     +      +PG   V N L   G  
Sbjct: 249 TFGENARSDYRLREVKLHPTCSC-----MTVKAGTHEAAVKVGMPGRHIVQNMLAVLGAA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 304 DLVGADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHST 363

Query: 376 IRTITSGRIIVVFG 389
               + GR I V G
Sbjct: 364 APEGSRGRRIAVLG 377


>gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
 gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
          Length = 452

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILNQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
          Length = 466

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 168/405 (41%), Gaps = 64/405 (15%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V  DSR ++ G +FVA+ G + DGH F+  A+ +GA   +V + ++ +  +  I    
Sbjct: 26  RRVWHDSRTVEPGDLFVALRGERHDGHDFVADAVRRGAAGALVEARWAEELANLGI---- 81

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGP 149
           P++VVD+T   L   AS         + AVTG+ GK+S    +  +  QR     FQ+  
Sbjct: 82  PLIVVDDTLAALLRLASYWRRLFAVPVAAVTGSVGKTSTKEAIASVLAQR-----FQV-- 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
             + +SF  D          +  AL  L+    T V V       + +RL  ++ +    
Sbjct: 135 VRSRASFNTD----------VGIALDLLTIDPNTDVVVLEFG---EAYRLGEVRELCALA 181

Query: 207 ----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G  TN+   H+    T +    +   L E  LP +  A++  DD +   +M  A  
Sbjct: 182 EPRIGVVTNVSYAHLARMGTIERIAQSIAELPES-LPADGVAVLNGDD-FRVRLM--AER 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVY 313
              RVL  G       L   C +  ++  +  ++G  FD +          PL G+  V+
Sbjct: 238 TPARVLLYG-------LSPDCHVRAEEIESRGLDGISFDLVAFGERNRVRLPLLGQHSVH 290

Query: 314 NALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLE 370
           +AL A    IA+G +  L LE  L   H    +   +      G   +D  Y  +  S  
Sbjct: 291 HALAA----IAVGYELGLTLEEMLPGFHDPRVQVRLLTVPGINGATLLDDTYNASPASCM 346

Query: 371 MILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLAD 411
             L  +  I + R I VFG     G   ++G R ++G+ A  + D
Sbjct: 347 AALSLLAEIPAQRRIAVFGDMYELGWYEEEGHR-MVGRRAAAVVD 390


>gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
 gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
          Length = 456

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 135/321 (42%), Gaps = 28/321 (8%)

Query: 29  KINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           K+ EVS    DSR ++ G +FVAI G K DGH ++  A+ +GA A +V    S       
Sbjct: 24  KLLEVSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEAALERGAGAALVQQQVS------- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             S  P L+V ++   L  F +     +   ++ +TG++GK++  + + +I  R+G    
Sbjct: 77  --SALPQLIVSDSEAALQTFGAMTRAAYDGILVGITGSAGKTTAKNMLAEILSRAG---- 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKL 204
               +   +   Q+N L  P        L+ L++     V    +    D  RL +  + 
Sbjct: 131 ----SVVATKGNQNNELGVP------LTLADLNNDTEYAVLELGAGKPGDIARLCEMARP 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H+    +  A    K  L ++ LP +  A+I ADD    +   RA    
Sbjct: 181 NIAILLNVAPAHLANFGSLDAISKTKGALLDD-LPADGLAVINADDPRVFDWHVRASPTR 239

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           C    +  +  +  +       +     +    +D +    +PG   +YNAL AA +  A
Sbjct: 240 CLTFGMNCKADYQAIDLQLKGFSGSDFVLQTPEQDVEVTLNVPGRQGIYNALAAAAVADA 299

Query: 325 IGIDSALVLEHLEKLHVVPGR 345
           +GI +  + E L  +   PGR
Sbjct: 300 LGISAITIREGLAAVKPAPGR 320


>gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 463

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 28/348 (8%)

Query: 29  KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           KIN +S DSR I  +   +F+AI G K +G  FI ++I  GA A++ +   ++       
Sbjct: 23  KINSISIDSRKIFNKKNCLFIAIKGKKFNGECFIKESIKNGAVAVINARKVNI------- 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N P L+V NT   L   +  +       I+A+TG+SGK+SV   +  I     L++F 
Sbjct: 76  --NIPHLIVKNTIISLLRLSKWIRENSKAKIIAITGSSGKTSVKEIIFNI-----LNTFS 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +T  +F  +N +  P  +     L    +     + V  +  G  +   + IK   
Sbjct: 129 -NTIATKKNF--NNNIGVPLTL-----LRLNKNHNFAIIEVGGNKFGEIKTSSNLIKPDI 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAYSKEVMKRAHNAG 264
               N+   H+   ++      AK  +F  +  K++  I+  Y  + + +   K   N  
Sbjct: 181 ALINNISESHLSGFKSINGVSKAKEEIFSGIQGKKNGIIVLNYNSNDWKEWKKKLKDNLV 240

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                +  + K+ +LK +   +   + +IS + ++ +   PL G   ++NA+ A  +   
Sbjct: 241 FWFGIIKNKKKYFYLKNIKKENFCIKFSISTQKEECEVSLPLIGYHNLFNAMAAIAISFL 300

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           +G     +   L+K +    R   +  N    +I +D ++ +N   MI
Sbjct: 301 VGASMESIKYGLKKSYPFKRRLFPIFLNK--NKIIIDDSYNANVGSMI 346


>gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 458

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  I      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V T+S
Sbjct: 294 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329


>gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 482

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 98/475 (20%), Positives = 181/475 (38%), Gaps = 76/475 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++AG IF A+VG + DGH +I  A  +GA  ++             +     ++ V
Sbjct: 29  DSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGKALIRV 88

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++    +   A     +    ++A+TG++GK++    V  +      +   +        
Sbjct: 89  ESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLSEKYRTHKNL-------- 140

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-------GS 208
             Q+N L  P  I  A       ++    + +E    GL Q     I  +        G 
Sbjct: 141 ENQNNELGLPMTILKA-------TENTEVLILEMGMRGLGQ-----IAFLCDIACPDIGV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H++   +Q+A   AK  L E L P+   A++  +D +S   +K+A +   R  
Sbjct: 189 ITNIGTTHMELLGSQEAIARAKWELIEAL-PETGSAVLNGEDEWS---VKQAEHDSHRTF 244

Query: 269 SVGYQGKF------------------------IHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             G +G+F                         H  +      ++Q   SV         
Sbjct: 245 FYGLEGRFHEPDLRGRSLTPFGTLGTCFQAEMGHGDRSLVPLGEKQAASSV-----TVRL 299

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPGE  V +AL A  + + + +        L  + +   R E       GG   +   +
Sbjct: 300 PLPGEHNVLDALAALSVGVLLNVSLEEGCRGLAAMELSRMRLEL--QPGPGGSTLISDVY 357

Query: 365 TSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-------- 414
            +N  S++  L+ ++       + + G   +  Q  R    ++   +AD+ I        
Sbjct: 358 NANPTSMKASLQVLKERGGESTLAILGEMYELGQSCRAGHYEVGQTVADLGISELITVGP 417

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468
           + ++  R    + +  + IH  P   E+   I+  R  +  LN+   VL+ A +G
Sbjct: 418 LAEEIARGALEKGLSPQRIHSFP---EREGAIKKARELLAGLNQGTWVLIKASRG 469


>gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 460

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 155/374 (41%), Gaps = 44/374 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++N V  D+R +  G +F+ + G   DGH FI  AI  GA A + +S     D +  +
Sbjct: 25  QTEVNGVCFDTRRLTPGQLFIPLSGT-HDGHDFIENAIKGGAVATLWAS-----DHTDRL 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LVVD+        +     K    ++AVTG++GK++    +  +       S +
Sbjct: 79  PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVL------SGE 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI-KL 204
              T T  +F  +N +  P          Y   Q  ++        G+D+  +LD + KL
Sbjct: 133 FNVTKTYDNF--NNEIGVP----------YTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180

Query: 205 IAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       T +G  HI++  T+    +AKM +   L  K     IY  D     +++RA 
Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGL--KADGYFIY--DGDEPLLIERAK 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVE---GKDFDFLFPLPGEFQVYNALV 317
                 ++ G      H   V A      Q   S E     D     P+ G++ V NAL 
Sbjct: 237 QVDFSKMTFGRS----HTDDVFATKTSDGQYNTSFEVNLWPDKKVTIPMMGDYNVNNALA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLEMILKN 375
           A  +     I    +++ L    +   R E++ T ++G +I  D   ++ + + E++   
Sbjct: 293 AITVGKLFQIPQIEIIQKLSHFDLTKNRTEWL-TGNKGEKILSDVYNSNPTAAREVLTAF 351

Query: 376 IRTITSGRIIVVFG 389
            +T   GR IVV G
Sbjct: 352 SQTDVMGRRIVVLG 365


>gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 423

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +    
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 130

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T S+F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 131 --TASNFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G   A V   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
 gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
          Length = 458

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  I      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V T+S
Sbjct: 294 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329


>gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK115]
          Length = 456

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 63/410 (15%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78
           Q+    +     DSR I++G +FV + G + DGH FIP A AQGA A      V   AY 
Sbjct: 20  QFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSEHPVAEGAY- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                         ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 78  --------------ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            S       G  + +IG   T+    +D        I L     +L   G  H+  E + 
Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIVLEMGQDHL---GDIHLLSELA- 174

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                      K   G  T +G  H+++  ++      KM++ +  L K+   I+ AD  
Sbjct: 175 -----------KPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG-LRKDGLLIVPAD-- 220

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              +++     A C+++  G           C    K  ++      +     P+ G++ 
Sbjct: 221 ---KIVNEFLPADCKLVRFGPDADIFL---TCLEERKDSLSFECNFLEQRIDLPVTGKYN 274

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
             NA++A+   +  G+  A + +   +L +   R E+    + G  I  D Y     ++ 
Sbjct: 275 ATNAMIASYAALQEGVSEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMR 333

Query: 371 MILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +IL+   TI +   GR + V     +     + + G +   L +  IVTD
Sbjct: 334 LILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382


>gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Edwardsiella tarda FL6-60]
          Length = 458

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 132/331 (39%), Gaps = 44/331 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  V++D+R +  G +FVA+ G+  DGH F  QA   GA A++V+   +L       
Sbjct: 21  DSPVTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQAREGGAGALLVNRRLAL------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P L+V +TR  L    + +  + P  ++A+TG+SGK+SV      I    G   + 
Sbjct: 74  --DVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEMSAAILGLCGNVLYT 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKL 204
            G          +N +  P  +   +     +    G  HV   A S  L +        
Sbjct: 132 AGNL--------NNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH------ 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKE 255
            +    NL   H++   +      AK  +F  L P +  AI+ AD             + 
Sbjct: 178 -SALVNNLAAAHLEGFGSLSGVAQAKGEIFAGL-PPQGTAIVNADSNDWENWQHALTEQR 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           V + +  AG         G   +   V +       T+       D L PLPG   + NA
Sbjct: 236 VWRFSPQAGA--------GVDFYASAVRSDAAGTHFTLHTPAGQCDVLLPLPGRHNIANA 287

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           L AA L +++G     V + L  L  VPGR 
Sbjct: 288 LAAAALTMSVGATLTQVQQGLAGLQAVPGRL 318


>gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 3431]
          Length = 452

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
 gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
          Length = 466

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q +A G +  +V          
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERP------- 83

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             I +    LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G  H      +  + Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     +     AK  ++  +LP +  AI+   D ++ E+ + A
Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +++S G  G     +      +      + +G  F  L P  GE  V NA  A  
Sbjct: 246 KS--HQIMSFGEGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+G+    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350


>gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 466

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 144/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G  F+A+ G + D H F+ Q  A G +  +V     +    
Sbjct: 31  QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +   LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G +H      +  L Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     ++    AK  ++  +LP    AI+   D ++ E++  A
Sbjct: 194 GI-------LNIGTAHLGEFGGREGICRAKSEIYRHILPN-GVAIVPQQDDFTAEILDAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R+ + G  G  ++   V  +      ++           P  GE  V NA  A  
Sbjct: 246 --KAHRISTFGVGGD-VYATDVELLPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +AIGI    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALAIGIGLEDIVQGLEQAQGAKGRLNFI---QKSPYLFIDDTYNANPTSM 350


>gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 415

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +    
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 130

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T S+F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 131 --TASNFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G   A V   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UTI89]
 gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli APEC O1]
 gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
 gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli UTI89]
 gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli APEC O1]
 gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IHE3034]
 gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UM146]
 gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 110-3]
 gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 16-3]
 gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H252]
 gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H263]
 gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
          Length = 452

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 458

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
 gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
          Length = 455

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 47/371 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V++D+R ++   +F+ + G   +GH F+ QA   G  A++ + +            N
Sbjct: 27  IQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFENGVSAVLWNKS----------EPN 76

Query: 90  TP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            P    +++VD+T   L   +     +    ++ VTG++GK++    +  + Q    + F
Sbjct: 77  PPQDQAVILVDDTLGALQELSKAYLQELGTRVIGVTGSNGKTTTKDMLHAVLQ----TQF 132

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKL 204
           ++  T    +F  +N +  P        L+ LS    T V+V E    G  +  +D +  
Sbjct: 133 RVHKTE--GNF--NNHIGLP--------LTVLSMPEDTEVAVLEMGMSG--KGEIDLLTR 178

Query: 205 IAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           +A       TN+G  H+    +++    AK+ +   L  K+   +IY  D    E +   
Sbjct: 179 LANPEAAVITNIGESHMQDLGSREGIAEAKLEITNGL--KKDGILIYIGD----EPLLNK 232

Query: 261 HNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +  CR  + G  +G    L+ V    +      S++G D  F  P+ G+  V NA+ A 
Sbjct: 233 RSYSCRTKTFGADEGNDYQLEDVKQTEDGTH--FSIKGIDKTFFIPVLGKHNVLNAIAAF 290

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              I  GI      + L  L V   R E + + S    I   Y  +  S++  ++ I ++
Sbjct: 291 AAGIHFGITVENAAKGLSGLKVTGMRLELLKSESGVSIINDAYNASPTSMKAAIELIESM 350

Query: 380 TS-GRIIVVFG 389
              G+ ++V G
Sbjct: 351 EGYGKKMLVLG 361


>gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 468

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 165/405 (40%), Gaps = 54/405 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R + AG +FVA+ G   DG  F  +A+ +GA A++V         +A   +   +
Sbjct: 31  ITTDTRKVVAGDLFVALRGEHFDGTAFAAEALERGAAAVLVDQKTPATALTALDTARGGV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGLSSF 145
           LV ++T +     A     K    ++A+TG++GK++       V S   ++C+ +   + 
Sbjct: 91  LVAEDTLRAYQDIAHAWRMKFDIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++G   T+     ++                      T   VE    G+ Q     I  +
Sbjct: 151 EVGLPLTLLGITPED----------------------TAAVVEIGMRGMGQ-----IAAL 183

Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           A       G  TN+   H++   + +    AK  L    +P     I+ ADD      M+
Sbjct: 184 APITAPSIGIVTNVCEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVA-AMR 241

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            +   G RV++ G      +  + +  + +  +  ++ +G+  ++  PLPG   V NAL 
Sbjct: 242 SSAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWDGERHEYAIPLPGRHNVSNALA 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKN 375
           A      +G+    +   L  L     R+E    +  G    ++  Y  + +S+   L+ 
Sbjct: 302 ALAAGFVLGMTPQEMQVGLTHLTAEKMRYEV---HQIGAWTLINDAYNASPSSMRASLET 358

Query: 376 IRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVT 416
              +  GR I V G     G   ++  R + G+ A +L    +VT
Sbjct: 359 TAALYPGRRIAVLGDMLELGAAAEKAHRDV-GRRAAELGFAMVVT 402


>gi|255022984|ref|ZP_05294970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J1-208]
          Length = 418

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 144/357 (40%), Gaps = 64/357 (17%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +FV  VGN  DGH F+ QA   GA A         Q       ++ P+++V++T   L  
Sbjct: 2   LFVPFVGNVRDGHEFVNQAREMGAVATF------WQKDVPNPPTDFPVILVEDTLLALQE 55

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSSFQIGPTSTISSFA 157
            A++   +    ++A+TG++GK++    +  I + +       G  +  IG   TI +  
Sbjct: 56  LAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMP 115

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS----FTNLG 213
           +D  +              +   G+ H           +H ++ +  IA       TN+G
Sbjct: 116 EDTEVA-------------VLEMGMNH-----------RHEIEVLSKIAKPDIAIITNIG 151

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             HI+Y  +++    AK+ +   L P  S  +IY    + + ++    N   R L+ G  
Sbjct: 152 EAHIEYLGSREEIAKAKLEITAGLNP--SGILIYP---HEETLLLGNINGDFRQLTFG-- 204

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVAAGLCIAI 325
                 K   A     ++    EG  F        +   P+ GE  V+N + A      I
Sbjct: 205 ------KSEAAEIYPLEIRAEAEGTCFITNWEPELEIFVPIIGEHNVFNTMAAMLAAREI 258

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           GI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK    + S
Sbjct: 259 GIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTFMHMDS 314


>gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
 gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
          Length = 462

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 162/373 (43%), Gaps = 47/373 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N VS+D+R I+ G IF+A+ G   +G+ F+  AI +GA   +VS    +      I  ++
Sbjct: 27  NSVSTDTRKIEKGDIFIALKGENFNGNNFVQTAIEKGASLCIVS---EINFDKEKIGKSS 83

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V++T K L   A     K    ++A+TG++GK+S    V  +        +++  T
Sbjct: 84  YVIKVESTNKALLDLAKYYKSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFKT 139

Query: 151 STISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +F  +N +  P  I+ L K+    +   G+ H +     H + +     I +I   
Sbjct: 140 E--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII--- 189

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI+   +++    AK+ +  +   K+S  I+  D+    +++    +   +V 
Sbjct: 190 -TNIGISHIENLGSRENILKAKLEV-TDFFSKDSILIVNGDN----DLLSNFESDKYKVC 243

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNALV 317
            +G + KF          N + + +  E  +FD           F   +PG+  V N+L 
Sbjct: 244 KIGTEKKF--------DFNGENLNLEEESIEFDVLEQGETAYKGFNVNVPGKHNVLNSLT 295

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      + ++   +   ++ L     R + +    +G  I  D Y  + +S++  +  +
Sbjct: 296 AIACGKVLDMNYEDIQTGIKNLKATSMRLDII--KEKGFTIINDCYNASPDSMKAAIDVM 353

Query: 377 RTITSGRIIVVFG 389
           + +   R I + G
Sbjct: 354 KNVKGKRTIALLG 366


>gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 487

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 156/372 (41%), Gaps = 51/372 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP---- 91
           DSR +  G +FVA+ G + DGH F  +A+A GA  ++ +      D  A I    P    
Sbjct: 33  DSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREV---DAPAVIVPPVPAEAT 89

Query: 92  --ILVVDNT-------RKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141
             + +  +T          L+  A  +  + P   ++ VTG+SGK+S    + Q+ +   
Sbjct: 90  GLMALAGDTDGSGAAVLAALARLARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQLLE--- 146

Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLD 195
                +GPT +   SF  +N L  P     A   +      LS++GV H+   A    + 
Sbjct: 147 ----PMGPTVAPPGSF--NNELGHPWTALRADEDTRHLVLELSARGVGHI---AKLCEVA 197

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+       G+  N+G  H+    +Q+A   AK  L E L P +  A++ ADD     
Sbjct: 198 PPRI-------GAVLNVGHAHLGEFGSQEAVARAKGELVESL-PADGVAVLNADDPLVAA 249

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQV 312
           +  R      RV+ VG +    H++    + ++Q     T+           PL GE  V
Sbjct: 250 MASRTR---ARVVLVG-ESPGAHVRAEDIVLDEQARPSFTLVAPQGSAQVSLPLHGEHHV 305

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
            NAL AA + + +G     V + L  +  V  R   V   + G  +  D Y     S+  
Sbjct: 306 GNALSAAAIALELGATLEQVADRLSGVRRVSARRMEVAETADGVTVVNDAYNANPESMRA 365

Query: 372 ILKNIRTITSGR 383
            LK + ++T GR
Sbjct: 366 ALKTLASMTRGR 377


>gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
 gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
          Length = 458

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 456

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 146/371 (39%), Gaps = 50/371 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  I   ++D+R ++   +F+ + G   +GH F+PQA  +G  A+       L D S 
Sbjct: 22  FEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAV-------LWDRS- 73

Query: 85  TIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137
               N P    +++VD+T + L   A     +    ++ VTG++GK++    +  +    
Sbjct: 74  --EPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKDMLHAVLGTQ 131

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSH 192
               + +G  +  IG   T+ +  +D  +        A+  + +LS       +V     
Sbjct: 132 YRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAV----- 186

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                            TN+G  H+    +++    AK+ +   L  +E   + Y    +
Sbjct: 187 ----------------ITNIGESHMQDLGSREGIAEAKLEIINGL--REDGVLFY----F 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             E + R     CR  + G +G    L+       ++    +++G D  F  P+ G   V
Sbjct: 225 GDEPLLREKAYTCRTTTYG-EGADNDLRLKEIKQAEEGTYFTIDGIDRSFFIPVLGRHNV 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ A    I  GI        L +L V   R E V T +    +   Y  +  S++  
Sbjct: 284 MNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAA 343

Query: 373 LKNIRTITSGR 383
           ++ I T+   R
Sbjct: 344 IELIETMKGYR 354


>gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 458

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401]
 gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 4343-70]
 gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-218]
 gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-272]
 gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-227]
          Length = 452

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGMEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
 gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
          Length = 452

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus]
          Length = 463

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 137/330 (41%), Gaps = 59/330 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR +  G +FVA  G + DGH F                A        T  +  P 
Sbjct: 30  VEYDSRKVVPGGLFVAFPGERVDGHDF-----------ASAVVAAGAAGVLGTRDTGEPG 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +VV+++ + ++  A  +  + PE  ++ +TG+SGK++   ++ Q+  R       +GPT 
Sbjct: 79  VVVEDSLRAVATLAHEVVARLPELTVVGLTGSSGKTTTKDYIGQLLSR-------LGPTV 131

Query: 152 TISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            +   + +N L  P  +  A A +      + ++GV H+             L GI   +
Sbjct: 132 ALPG-SLNNELGFPYTVLQAGADTRFLVLEMGARGVGHI-----------RHLTGIARPS 179

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G   N+G  HI    + +    AK  L E  LP+   A++ ADDA    V   A   G 
Sbjct: 180 IGVVLNIGAAHIGEFGSVEGTALAKGELVEA-LPQTGVAVLNADDAL---VSAMASRTGA 235

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNA 315
           RV++VG +     L+ V        VT+   G+    L            + G  QV N+
Sbjct: 236 RVVTVG-EAAGAQLRAV-------DVTLDPAGRASYVLEHGERRGTVRLRVAGRHQVANS 287

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           L AA + +  G+    ++  L ++ +V  R
Sbjct: 288 LSAAAVALTAGLAFDDLVTALSEMSMVSDR 317


>gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 57-2]
          Length = 452

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 466

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 145/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G +F+A+ G + D H F+ Q  A G +  +V     +    
Sbjct: 31  QIPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +   LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----DIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   +   + G +H      +  L Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQFAVMELGASHQGEIDYTSKLVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     ++    AK  ++  +LP    AI+   D ++ E+ K A
Sbjct: 194 GI-------LNIGTAHLGEFGGREGICRAKSEIYRHILPN-GVAIVPQQDDFTAEIHKAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R+ + G  G  I+   +  +      T+           P  GE  V NA  A  
Sbjct: 246 Q--AHRISTFGVGGD-IYATDIELLPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+GI    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGIGLEDIVQGLEQAQGAKGRLNFI---QKSPYLFIDDTYNANPNSM 350


>gi|87199151|ref|YP_496408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134832|gb|ABD25574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 489

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 154/374 (41%), Gaps = 40/374 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR +  G +F A+ G   DGH ++  A  +GA   VV  A     F       
Sbjct: 42  VSGVEIDSREVVEGDLFFALKGENSDGHRYLEGAFGRGAAGAVVEHAC----FG------ 91

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V NT   L         +    I+ VTG++GK+ V   +     R+         
Sbjct: 92  -PHVLVSNTSTALEDLGKAARNRVDAGIIGVTGSAGKTGVKEALYAALDRASRGRAH--- 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             ++ S+  +N +    P+ LA+ +   +S GV  + +  +       RL  ++      
Sbjct: 148 -RSVKSY--NNHVGV--PLSLAR-MPARTSFGVFEMGMNHAGELAALTRL--VRPHVAIV 199

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   HI +   ++A  +AK  +FE L P    AII AD+ + + +  +A     RV+S
Sbjct: 200 TTIAPAHIGHFAGEEAIADAKAEIFEGLEPG-GVAIIPADNRHFEHLRAKATLHAERVIS 258

Query: 270 VGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G         L  V A      VT  + G+   +    PGE  V N+L       AIG 
Sbjct: 259 FGVAKDATVRLLDAVPAPGGGTLVTADLGGRKVCYTIAQPGEHWVANSLAVMAAVEAIGG 318

Query: 328 D---SALVLEHLEKL------HVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
           D   + L L  +E L      H +P      G +  G  + +D ++ +N  S+ + L+ +
Sbjct: 319 DLGAAGLALAEMEGLAGRGARHAIPAH----GGDGSGSALLIDESYNANPASMAVTLRQL 374

Query: 377 RTITSGRIIVVFGC 390
               + R + + G 
Sbjct: 375 GQTPAARRVAILGA 388


>gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 449

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 25/291 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FVA+VG   DGH FI QA  +GA   +V       D    I    P+
Sbjct: 11  VSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDRLTGDQEYGI----PL 66

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V NTR  L   A+    +    ++AVTG++GK++V   +  I +R+   +        
Sbjct: 67  IRVQNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQA-----PEE 121

Query: 153 ISSFAQDNRLTTPSPIY--LAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAG 207
           + + A D  L T   +   +   L+ L  +   H +V     +H  +   L  + K    
Sbjct: 122 MRTDAPDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVA 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN G  HI    + +A   AK  +FE L  ++  A+I ADD +++   + A N   ++
Sbjct: 182 LITNAGDAHIQGLGSVEAVARAKGEIFEGL-DQQGIAVINADDPHNRLWRELAGNR--QI 238

Query: 268 LSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +  G + K     KV A +    +  Q+T+ +     +    +PGE  V N
Sbjct: 239 IDFGLKSK----AKVSADYKLTFSGAQITLILPQGVEETTLQVPGEHNVRN 285


>gi|58700177|ref|ZP_00374680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533307|gb|EAL57803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 95

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQD 460
           MGKIA   AD  I+TDDN R EDP KIR +I+   P  +E G R EAI   +++  N+  
Sbjct: 1   MGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGM 60

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +L+VAGKG+E   I+ N   + S D ++I+
Sbjct: 61  ILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 89


>gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 460

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 155/374 (41%), Gaps = 44/374 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++N V  D+R +  G +F+ + G   DGH FI  AI  GA A + +S     D +  +
Sbjct: 25  QTEVNGVCFDTRRLTPGQLFIPLSGT-HDGHDFIENAIKGGAVATLWAS-----DHTNRL 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LVVD+        +     K    ++AVTG++GK++    +  +       S +
Sbjct: 79  PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVL------SGE 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI-KL 204
              T T  +F  +N +  P          Y   Q  ++        G+D+  +LD + KL
Sbjct: 133 FNVTKTYDNF--NNEIGVP----------YTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180

Query: 205 IAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       T +G  HI++  T+    +AKM +   L  K     IY  D     +++RA 
Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGL--KADGYFIY--DGDEPLLIERAK 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVE---GKDFDFLFPLPGEFQVYNALV 317
                 ++ G      H   V A      Q   S E     D     P+ G++ V NAL 
Sbjct: 237 QVDFSKMTFGRS----HTDDVFATKTSDGQYNTSFEVNLWPDKKVTIPMMGDYNVNNALA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLEMILKN 375
           A  +     I    +++ L    +   R E++ T ++G +I  D   ++ + + E++   
Sbjct: 293 AITVGKLFQIPQIEIIQKLSHFDLTKNRTEWL-TGNKGEKILSDVYNSNPTAAREVLTAF 351

Query: 376 IRTITSGRIIVVFG 389
            +T   GR IVV G
Sbjct: 352 SQTDVMGRRIVVLG 365


>gi|119026103|ref|YP_909948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765687|dbj|BAF39866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 517

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 102/464 (21%), Positives = 198/464 (42%), Gaps = 42/464 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ D+R ++ G  F+   G  +  +L       QG +   +++  S  DFS   ++  P 
Sbjct: 44  ITYDTRKVEPG-TFLCCKGRFKAEYL-------QGIDERGLAAYVSENDFSDATQA--PG 93

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTG--TSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L+VD+ RK ++L ++  YG+ P++ L V G   +   +  +++ Q    +G S  +    
Sbjct: 94  LIVDDVRKAMALLSAEFYGR-PQDQLKVVGITGTKGKTTTAYLTQ-AMLNGCSGGKCALF 151

Query: 151 STISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           S++ +        ++ LTTP  +   + +      G+ ++ +E SS      R+ G+   
Sbjct: 152 SSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDNGMEYLVMEVSSQAYKVDRVFGLTFD 211

Query: 206 AGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             +F N+  DHI    H T + Y + K ++ +         ++ AD A +  + + A + 
Sbjct: 212 VAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNC----RALVLGADCARADLIRQDARHT 267

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
              V +    G     +    A  +  + +I ++G    +    L G+F   NA  A  +
Sbjct: 268 SVPVTTFALGGDSMADVMAAPANDDHSRFSIVIDGTSIGELSLTLDGDFNYANAAAAVAI 327

Query: 322 CIAIGID--SALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             A G D  SA   + L ++  V   GR E            VDYAH   S+  +L  + 
Sbjct: 328 ARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNTIAIVDYAHNYASVTALLDYVD 387

Query: 378 TITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                    I ++ G  G++   +R  +   A D  D  ++T ++   E  E++ A++  
Sbjct: 388 QRYGSEKPEITLITGSAGNKAYDRRAEIVHAAQDRIDHLVLTFEDTDDEPVEQVCADMND 447

Query: 435 GI--PGFIEKG--NRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470
            +  P    K   +R EA+ T +    K      ++++ GKG+E
Sbjct: 448 SVTNPQLDVKTILDRAEAVETTVSRDRKDPEHLHIILIIGKGNE 491


>gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei 53G]
          Length = 452

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLNAIKAGLANLKAVPGRL 317


>gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 465

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 17/251 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V       D 
Sbjct: 14  LHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD- 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                   P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I + +  
Sbjct: 73  -------VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAA 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            S  +      SS   +N +  P  +  A       +       + A   G   +  D +
Sbjct: 126 QSSTV---VYASSGNCNNEIGLPLAVIAAP-----DNADFAVYEMGAGKLGDIGYLTDIV 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H++   +       K  ++  L P  + A+I  DDA++    ++   
Sbjct: 178 TPDVALVNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVP 236

Query: 263 AGCRVLSVGYQ 273
           AGC VL  G Q
Sbjct: 237 AGCAVLRFGLQ 247


>gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
 gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
          Length = 453

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+EVS+D+R +  G +FVA+ G K D H +   A+  GA A++VS    +         +
Sbjct: 24  ISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVNDGAAALLVSKHLPI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P LVVD+TR  L   A  +  +    ++A+TG+SGK+SV      I ++ G
Sbjct: 75  VPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSGKTSVKEMTAAILRQCG 126


>gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 453

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 151/382 (39%), Gaps = 67/382 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT-IRS 88
           I+ V +DSR ++ G +FV   G + DGH F   A   GA  I+ +          T +  
Sbjct: 21  IHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYIIANHPVDGVPADRTVVVP 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           ++ + +V     +  LF+ R+ G        VTG+ GK++   F   +     LS+F   
Sbjct: 81  DSALAMVRMASNYRMLFSPRIIG--------VTGSVGKTTTKEFCYAV-----LSAFG-- 125

Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIA 206
             +  +   Q+N +  P+ ++ L  A  Y     V  + ++   H  +  RL   ++  A
Sbjct: 126 -NTLKTEGNQNNEIGVPNTLFRLESATEY----AVVEMGMD---HAGEIERLTRCVRPSA 177

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------------- 250
           G  T +G  H++   T++    AKM +    LP  +P ++ AD+                
Sbjct: 178 GIITMIGVSHLENLGTRENILKAKMEICAG-LPDGAPLVLNADNDLLPTAQVPGRLRAVW 236

Query: 251 -AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               +E   RA N     +  G QG    L             +  E   F    P  G 
Sbjct: 237 FGIEQEADVRAEN-----IQTGAQGTTFTL-------------VDREYGRFPVSIPTAGL 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSN 367
             VY+AL A      +G+D A   + L +      R   V    RGG   ++  Y  + +
Sbjct: 279 HTVYDALSAYAAATRLGLDPANCAKALSRYQTTGMRQHIV---ERGGVTVIEDCYNASPD 335

Query: 368 SLEMILKNIRTITSGRIIVVFG 389
           S++  +  ++ + + R I + G
Sbjct: 336 SMKAAISVLKALPNKRKIALLG 357


>gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K-12 substr. W3110]
 gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia sp. 4_1_40B]
 gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli H736]
 gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
 gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli]
 gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K12 substr. W3110]
 gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli DH1]
 gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Escherichia coli ETEC H10407]
 gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia coli DH1]
 gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1520]
 gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
          Length = 452

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E482]
          Length = 452

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae Sd197]
 gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
 gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
          Length = 452

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|294675705|ref|YP_003576320.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
 gi|294474525|gb|ADE83913.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
          Length = 1288

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 132/331 (39%), Gaps = 42/331 (12%)

Query: 63  AIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           A+A+ A+ ++ S A      +  A  R+  P  V    R    + A R         + V
Sbjct: 60  ALARAADCVIASPAIPETHVERRAARRAGLP--VKSRARALAEVIADR-------QTICV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            G+ GKS+V + +  I   +G   F   +G     ++FA   RL            + L 
Sbjct: 111 AGSHGKSTVTAMLIHILSAAGQEDFGYMLG-----AAFADAARLP-----------ARLG 154

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +     V+    +HG        + ++    TNL  +H D++        A    F   L
Sbjct: 155 APDAPFVTEACEAHGALAAWQPSLAIL----TNLDDEHADHYGGLPGLRRAVAD-FLSRL 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P E  A+   DD    ++++RA    C  L+ G  G    L+ V         T+ + G 
Sbjct: 210 PPEGRAVACGDDPQVLDLLRRAR---CAALTYGL-GADNDLRAV--PDGTGGATVFLNGT 263

Query: 299 DFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           D   L   +PG   + NAL A G+ + +GI  A     L     +  R + V   +R  R
Sbjct: 264 DLGRLSLIVPGRHNLRNALAALGMALTLGIGFATAAGALADFPGLARRLQPVAPGNRL-R 322

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           ++ D+AH    +E  L  +R  T GR+I +F
Sbjct: 323 LFDDFAHHPAEIEAALAVLRETTEGRLIAIF 353


>gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LF82]
 gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus
           cereus Q1]
 gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus Q1]
 gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 458

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
          Length = 454

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 159/353 (45%), Gaps = 51/353 (14%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL N  +I   ++ +  +  +S+D+R IQ   +F+A+ G+  DG  +I  A  +GA
Sbjct: 7   KTITELTN--TIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 69  EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              VV+  Y ++ D+        P++ VDNT++F+   A          ++A+TG++GK+
Sbjct: 65  SCCVVNRDYRNINDY--------PVIEVDNTKEFMMDLARGYINSLKCKVIAITGSNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  + +      +++  T       Q N     + I L+K +  +     T V+V
Sbjct: 117 TTKDIMSSLLKE----KYKVVKT-------QKNY---NNEIGLSKTIFDIDDD--TEVAV 160

Query: 188 -EASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            E  +    + R   +  IA       TN+G  H+   +T++    AK  + E  L ++ 
Sbjct: 161 LEMGTENFGEIR--QLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEG-LKEDG 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE 296
             I+  DD+  +EV K+ +    + ++ G      Y+ + I   +  +       T S+ 
Sbjct: 218 IFILNNDDSILREV-KQEYKLPEKTITFGIKPDSDYRMEMIKADETGS-------TFSI- 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             D  F   L G  Q+YNA ++  +   +G+D + + + L+ + +   R E +
Sbjct: 269 -NDHVFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELI 320


>gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 536]
 gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia
           coli 536]
 gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 60-1]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei Ss046]
 gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii Sb227]
 gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ATCC 8739]
 gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SE11]
 gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sp. D9]
 gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046]
 gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227]
 gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli ATCC 8739]
 gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11]
 gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)]
 gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli BL21(DE3)]
 gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Escherichia coli 042]
 gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli W]
 gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 85-1]
 gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           dysenteriae CDC 74-1112]
 gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           flexneri CDC 796-83]
 gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli EC4100B]
 gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli EPECa14]
 gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E128010]
 gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LT-68]
 gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1180]
 gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1357]
 gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli KO11]
 gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H120]
 gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H489]
 gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TA007]
 gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 117-3]
 gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1167]
 gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 5216-82]
 gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 3594-74]
 gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Escherichia coli UMNK88]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           boydii ATCC 9905]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 155/374 (41%), Gaps = 44/374 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++N V  D+R +  G +F+ + G   DGH FI  AI  GA A + +S     D +  +
Sbjct: 25  QTEVNGVCFDTRRLTPGQLFIPLSG-AHDGHDFIENAIKGGAVATLWAS-----DHTDRL 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LVVD+        +     K    ++AVTG++GK++    +  +       S +
Sbjct: 79  PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVL------SGE 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI-KL 204
              T T  +F  +N +  P          Y   Q  ++        G+D+  +LD + KL
Sbjct: 133 FNVTKTYDNF--NNEIGVP----------YTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180

Query: 205 IAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       T +G  HI++  T+    +AKM +   L  K     IY  D     +++RA 
Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGL--KADGYFIY--DGDEPLLIERAK 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVE---GKDFDFLFPLPGEFQVYNALV 317
                 ++ G      H   V A      Q   S E     D     P+ G++ V NAL 
Sbjct: 237 QVDFSKMTFGRS----HTDDVFATKTSDGQYNTSFEVNLWPDKKVTIPMMGDYNVNNALA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLEMILKN 375
           A  +     I    +++ L    +   R E++ T ++G +I  D   ++ + + E++   
Sbjct: 293 AITVGKLFQIPQIEIIQKLSHFDLTKNRTEWL-TGNKGEKILSDVYNSNPTAAREVLTAF 351

Query: 376 IRTITSGRIIVVFG 389
            +T   GR IVV G
Sbjct: 352 SQTDVMGRRIVVLG 365


>gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
 gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 133/326 (40%), Gaps = 41/326 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +         +
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            TP   Y    L      G  H    A +  L +             
Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  +F   LP+   AI+ AD+           S++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFTG-LPENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL  A 
Sbjct: 241 PNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAGAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346
           L +++G     +   L  L  VPGR 
Sbjct: 292 LAMSVGATRDAIKAGLANLKAVPGRL 317


>gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
 gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|134102303|ref|YP_001107964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914926|emb|CAM05039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 458

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 156/372 (41%), Gaps = 51/372 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP---- 91
           DSR +  G +FVA+ G + DGH F  +A+A GA  ++ +      D  A I    P    
Sbjct: 4   DSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREV---DAPAVIVPPVPAEAT 60

Query: 92  --ILVVDNT-------RKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141
             + +  +T          L+  A  +  + P   ++ VTG+SGK+S    + Q+ +   
Sbjct: 61  GLMALAGDTDGSGAAVLAALARLARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQLLE--- 117

Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLD 195
                +GPT +   SF  +N L  P     A   +      LS++GV H+   A    + 
Sbjct: 118 ----PMGPTVAPPGSF--NNELGHPWTALRADEDTRHLVLELSARGVGHI---AKLCEVA 168

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+       G+  N+G  H+    +Q+A   AK  L E L P +  A++ ADD     
Sbjct: 169 PPRI-------GAVLNVGHAHLGEFGSQEAVARAKGELVESL-PADGVAVLNADDPLVAA 220

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQV 312
           +  R      RV+ VG +    H++    + ++Q     T+           PL GE  V
Sbjct: 221 MASRTR---ARVVLVG-ESPGAHVRAEDIVLDEQARPSFTLVAPQGSAQVSLPLHGEHHV 276

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
            NAL AA + + +G     V + L  +  V  R   V   + G  +  D Y     S+  
Sbjct: 277 GNALSAAAIALELGATLEQVADRLSGVRRVSARRMEVAETADGVTVVNDAYNANPESMRA 336

Query: 372 ILKNIRTITSGR 383
            LK + ++T GR
Sbjct: 337 ALKTLASMTRGR 348


>gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
 gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
          Length = 458

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
 gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
          Length = 468

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 17/245 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V       D       
Sbjct: 23  RVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD------- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I + +   S  + 
Sbjct: 76  -VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTV- 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                SS   +N +  P  +  A       +       + A   G   +  D +      
Sbjct: 134 --VYASSGNCNNEIGLPLAVIAAP-----DNADFAVYEMGAGKLGDIGYLTDIVTPDVAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H++   +       K  ++  L P  + A+I  DDA++    ++   AGC VL
Sbjct: 187 VNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVPAGCAVL 245

Query: 269 SVGYQ 273
             G Q
Sbjct: 246 RFGLQ 250


>gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
 gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
          Length = 454

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 153/372 (41%), Gaps = 34/372 (9%)

Query: 23  MQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +Q R + IN     VS+D+R +  G +FV + G + DGH FI QA  +GA A ++     
Sbjct: 16  VQGRLQGINIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKGASAALLEQ--- 72

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                  I    P + V + R  L   A+    +    I+AVTG++GK++V   +  I  
Sbjct: 73  ------RINDPLPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKEMIASI-- 124

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                   +G    I +   +       P+ L   L   +S     + + A+  G  ++ 
Sbjct: 125 --------LGWVEPILATRGNLNNDIGVPLTL---LELDTSHSFAVIEMGANRPGEIEYL 173

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +      TN G  H+D     +    AK  +F+ +   E  AI+ ADD +      
Sbjct: 174 SRLTRPQVALITNAGPAHLDGFGDLKGVARAKGEIFQGM-GSEGVAILNADDPHFS--YW 230

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           R    G  V+  G  +   +  + + A     + T+           PLPG   V+NAL 
Sbjct: 231 RDLAGGLPVMGFGLSRSAEVTARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALA 290

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKN 375
           A+   IA+G+D   +   L  L  +PGR +       GG   +D  + +N  SL+  L+ 
Sbjct: 291 ASAAAIALGVDRQHLSASLAALPSIPGRLQI--RRGIGGMRLLDDTYNANPASLQAALEL 348

Query: 376 IRTITSGRIIVV 387
           +      R +V+
Sbjct: 349 LAKFPGERALVL 360


>gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
 gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
          Length = 478

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 48/328 (14%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSN 89
           + + +DSR ++ G +FV +VG + DGH F+  A+ QGA A++      S +   A +RS+
Sbjct: 26  SRIGTDSRELEPGCLFVPLVGERFDGHGFLAAALEQGALAVLAQRDRLSAEQAEALVRSS 85

Query: 90  TP-ILVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I +VD+T+          R  G  P  ++AVTG++GK++    ++ +          
Sbjct: 86  GGRIWLVDDTQAAYQELGRLWRRQGSAP--VIAVTGSAGKTTTRELIRAVLS-------P 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLDQ-HRLD--- 200
           +GP   ++S   +N      P+ L KA       G  H  V VE    GL +  RL    
Sbjct: 137 LGP--VLASVGNENN-DIGVPLTLLKA-------GGEHRAVVVEMGMRGLGEIERLSRCA 186

Query: 201 --GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              I +I    TN+G  HI    +++A   AK  +   L P +   +I A D   +  + 
Sbjct: 187 EPDITVI----TNIGTAHIGRLGSREAIATAKCEIVAALRP-DGLVVIPAGDPLLEASLA 241

Query: 259 RAHNAGCRVLSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGE 309
              +   RV+ V  Q        G+ +   +     ++     +  G ++     PLPG 
Sbjct: 242 AVWSG--RVIRVALQDDPTGPQPGQLLGRLRAGTDGDRLIWGRAEPGAREHSTELPLPGR 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLE 337
               N L+A  +   +G+D  L L  LE
Sbjct: 300 HNARNLLLALAVASELGVDP-LQLSRLE 326


>gi|293402021|ref|ZP_06646160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304413|gb|EFE45663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 438

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 41/272 (15%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK+++ + + ++ QR G                  N +   +  +   AL+Y  
Sbjct: 107 AITGTNGKTTITTMLYEMLQRKG------------------NAIVAGNIGFPLSALAYDF 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   +V++E     L   +L GI+  A   +   NL  DH+DY  + +AY+ +KMR++E
Sbjct: 149 EEEEKYVALE-----LSNFQLLGIETFAPEVSVVCNLAPDHLDYMPSVEAYYESKMRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               KE   +   DD     V+  A N  C  +      + + L +         + +  
Sbjct: 204 N-CQKEDWFLRNVDDP---TVVAYAKNIPCTTIDFSLTRQDVDLYRKDGKVWLHDLMLFE 259

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E +     FP+ G++ + NA+VAA +   +G+  A +   +     V  R E++G    G
Sbjct: 260 ESR-----FPIVGDYNLSNAMVAACMAYKLGVSLADIQATISSFQPVEHRLEYIGEKD-G 313

Query: 356 GRIYVDYAHTSN-----SLEMILKNIRTITSG 382
            + Y D   T+      +L    KNI  +  G
Sbjct: 314 VKFYNDSKATNTHAVTAALSSFDKNILLLAGG 345


>gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 155-74]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechocystis sp.]
          Length = 454

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 124/307 (40%), Gaps = 45/307 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +IN + +D+R + +G +F+A+ G   DGH FIPQA+  GA A+V      ++    T+  
Sbjct: 29  RINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDR--PVEGLGETVAQ 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                +V++T       A+    +    I+ VTG+ GK++    +  +  + G       
Sbjct: 87  ----FLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFG------- 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIA 206
                       R    + I + K L  LS      + VE +  G  Q  L  D  K   
Sbjct: 136 -------NVHKTRANYNNEIGVPKTLLELSPDHDFAI-VEMAMRGRGQIALLADIAKPTI 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  HI    ++ A   AK  L     P ES AI+  D+A   E  +R      +
Sbjct: 188 GLITNVGTAHIGLLGSELAIAEAKCELLAH-QPPESTAILNRDNALLMETAQRFWQG--K 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAGL 321
            ++ G +G  +H               +V+G++          PL G     N L A  L
Sbjct: 245 TITYGLEGGDVH--------------GTVDGENLILDGVSLPLPLAGVHNASNYLAAIAL 290

Query: 322 CIAIGID 328
              +G+D
Sbjct: 291 AQCLGLD 297


>gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 458

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V TNS
Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329


>gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 457

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/378 (20%), Positives = 154/378 (40%), Gaps = 50/378 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +  I+ V++D+R ++   +F+ + G   +GH F+PQA   G  A++   +       
Sbjct: 21  QYEQTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQAFEAGVAAVLWDRS------E 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                N  +++VD+T   L   A     +    ++ VTG++GK++    +  +       
Sbjct: 75  PNPPENQAVILVDDTLSALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTRYRV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGVTHVSVEASSH 192
            +  G  +  IG   T+ +  +D  +        AK     LS L++             
Sbjct: 135 HKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEIDLLSRLANPD----------- 183

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                        A   TN+G  H+    +++    AK+ +   L  KE   +IY  D  
Sbjct: 184 -------------AAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDGVLIYIGD-- 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + ++++ ++   +    G Q  +  L+ V    +++    +++G +  F  P+ G+  V
Sbjct: 227 -EPLLQKTYSCQTKTYGAGAQNDY-QLQDVS--QSEEGTHFTIKGMEKTFFIPILGKHNV 282

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ A       GI      + L  L V   R E + T+S    I   Y  +  S++  
Sbjct: 283 MNAMAAIAAGAYFGITPEDAAKGLSGLKVTGMRLELIKTDSGISIINDAYNASPTSMKAA 342

Query: 373 LKNIRTITS-GRIIVVFG 389
           ++   ++   G+ ++V G
Sbjct: 343 IQLTESLEGYGKKMLVLG 360


>gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius CECT 5713]
          Length = 456

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 160/374 (42%), Gaps = 38/374 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W +  I  V  DSR I++G +F+ +V  + DGH ++  AI  GA A +       +D S
Sbjct: 19  EWEDISITSVCFDSRKIESGALFIPLVA-ENDGHKYVEAAINGGAVATLWQ-----EDHS 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             I  +  +L V +T   L         K    ++A+TG++GK++       +       
Sbjct: 73  ENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           + Q     T ++F  +N +  P        ++ LS +  T V V     G+D++ +LD +
Sbjct: 127 ATQFNVHKTFANF--NNEIGVP--------MTILSMEPNTEVLV--VEMGMDRYGQLDFL 174

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             +A       T +G  HI++  T+    +AKM +    L ++   +I  D+     +  
Sbjct: 175 SKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHG-LKEDGELVINGDEPL---LTT 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALV 317
           +A      VL+ G       ++ +  + +  + +  V    + DF   + G + V+NAL 
Sbjct: 231 KAKEVSQEVLTFGSLDNN-DMRAMDIVSDATKTSFKVATWPEVDFTINMIGAYNVFNALA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A  +     I    + + L    +   R E++   + G +I  D Y     +++ +L   
Sbjct: 290 ALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKN-GAKILSDVYNSNPTAVKEVLYAF 348

Query: 377 RTI-TSGRIIVVFG 389
             + T G+ I+V G
Sbjct: 349 EQVPTEGKRIIVLG 362


>gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
 gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
          Length = 454

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 159/353 (45%), Gaps = 51/353 (14%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL N  +I   ++ +  +  +S+D+R IQ   +F+A+ G+  DG  +I  A  +GA
Sbjct: 7   KTITELTN--TIINEKYHDVMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 69  EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              VV+  Y ++ D+        P++ VDNT++F+   A          ++A+TG++GK+
Sbjct: 65  SCCVVNRDYRNINDY--------PVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  + +      +++  T       Q N     + I L+K +  +     T V+V
Sbjct: 117 TTKDIMSSLLKE----KYKVVKT-------QKNY---NNEIGLSKTIFDIDDD--TEVAV 160

Query: 188 -EASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            E  +    + R   +  IA       TN+G  H+   +T++    AK  + E  L ++ 
Sbjct: 161 LEMGTENFGEIR--QLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEG-LKEDG 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE 296
             I+  DD   +EV K+ +    + +++G      Y+ + I   +  +       T S+ 
Sbjct: 218 IFILNNDDPILREV-KQEYKLPEKTITLGIKPDSDYRMEMIKADETGS-------TFSI- 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             D  F   L G  Q+YNA ++  +   +G+D + + + L+ + +   R E +
Sbjct: 269 -NDHVFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELI 320


>gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 456

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 160/374 (42%), Gaps = 38/374 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W +  I  V  DSR I++G +F+ +V  + DGH ++  AI  GA A +       +D S
Sbjct: 19  EWEDISITSVCFDSRKIESGALFIPLVA-ENDGHKYVEAAINGGAVATLWQ-----EDHS 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             I  +  +L V +T   L         K    ++A+TG++GK++       +       
Sbjct: 73  ENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           + Q     T ++F  +N +  P        ++ LS +  T V V     G+D++ +LD +
Sbjct: 127 ATQFNVHKTFANF--NNEIGVP--------MTILSMEPNTEVLV--VEMGMDRYGQLDFL 174

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             +A       T +G  HI++  T+    +AKM +    L ++   +I  D+     +  
Sbjct: 175 SKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHG-LKEDGELVINGDEPL---LTT 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALV 317
           +A      VL+ G       ++ +  + +  + +  V    + DF   + G + V+NAL 
Sbjct: 231 KAKEVSQEVLTFGSLDNN-DMRAMDIVSDATKTSFKVATWPEVDFTINMIGAYNVFNALA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A  +     I    + + L    +   R E++   + G +I  D Y     +++ +L   
Sbjct: 290 ALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKN-GAKILSDVYNSNPTAVKEVLYAF 348

Query: 377 RTI-TSGRIIVVFG 389
             + T G+ I+V G
Sbjct: 349 EQVPTEGKRIIVLG 362


>gi|6723459|emb|CAB66325.1| MurC protein [Corynebacterium glutamicum]
          Length = 486

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 24/199 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D+ +T +AYF    ++F++   + +P    ++  +D ++ E+ +R+   G +
Sbjct: 193 TNVEPDHLDFFKTPEAYF----QVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248

Query: 267 VLSVGYQGKFIHLKKVCA---------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            +  G +       +V A         +    + TI+++G++   +  +PG+  V N   
Sbjct: 249 TVGYGTRDAVQAHPEVPAMATVVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAA 308

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSLEMIL 373
           A      +G D   ++E L     V  RFEF G        G  IY DYAH    +  +L
Sbjct: 309 ALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVL 368

Query: 374 K----NIRTITSGRIIVVF 388
           +     ++    GR+IV F
Sbjct: 369 RRCATRVKAAGKGRVIVAF 387


>gi|294791068|ref|ZP_06756226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
 gi|294458965|gb|EFG27318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
          Length = 540

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 124/528 (23%), Positives = 218/528 (41%), Gaps = 74/528 (14%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL-FIP 61
           L++LI++D     +   I+P +        +S D+R +    +       K   H  ++ 
Sbjct: 32  LKELIHQD--SWTDTPEIWPAETAGMTFTRISYDTRQVDDHTLLFC----KGRFHSSYLD 85

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A   G    V  +     D+S   R+    ++V + +K +SL +S  Y ++P   + V 
Sbjct: 86  KADQDGLPCYVAEN-----DYSQVTRAIG--IIVTDIKKAMSLLSSAFY-RYPAKEITVI 137

Query: 122 GTSGKSSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYL 170
           G +G       A F   I     L+++  G  + +SS           ++ LTTP  + L
Sbjct: 138 GITGTKGKTTTAYFTHAI-----LNAYTGGKAALLSSVDNCLDGHTFVESDLTTPESLDL 192

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228
            + +    SQG+ ++ +E SS      R+ G+    G+F N+  DHI    H + + YF 
Sbjct: 193 FRMMRQAVSQGMKYLIMEVSSQAYKVDRVYGLTFALGAFLNISPDHISPIEHPSFEDYFY 252

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---KVCAI 285
            K     ++    S  ++ AD  +S  V + A   G  V +   +           V +I
Sbjct: 253 CK----RQIALNSSALVLNADMVHSSLVTQDAGLRGIPVTTFRLENSNADRTADLTVTSI 308

Query: 286 HNKQ----QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSA-----LVLEH 335
              +    Q    ++GKD   F   +PG+F   NA  A  L  A G+D         L+ 
Sbjct: 309 REDKGESPQFQARLKGKDLGRFSLSIPGDFNGANAAAALALISACGLDLTNPHVQQALQA 368

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGG 392
           +EK+  + GR E   +  +     VDYAH   S  ++L  I       + RII+V G  G
Sbjct: 369 MEKV-TIAGRMEIFSSPDKSLVGIVDYAHNGVSASVLLDYIDQAYGRLNPRIILVTGSAG 427

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSE---------DPEKIRAEIIHGIPGFIEKG 443
           ++   +R  + + A +     I T+++  +E         D      ++ HGI   + + 
Sbjct: 428 NKAYDRRQEIVEAAQNRISRFIFTEEDTDTEPIIDICQQMDQAVSNPQVEHGI--ILSRS 485

Query: 444 NRI-EAIRTAIEMLNKQDVLVVA--GKGHE------TVHIVTNGEKKM 482
             + EA R   E   +    V+A  GKG+E        H+V  G+ ++
Sbjct: 486 QALQEAFRDGKEHARQGKTTVIAAIGKGNERWIKHLNKHVVYQGDDRI 533


>gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLVNLKAVPGRL 317


>gi|169629094|ref|YP_001702743.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium abscessus
           ATCC 19977]
 gi|226711870|sp|B1MP38|MURC_MYCA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169241061|emb|CAM62089.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Mycobacterium
           abscessus]
          Length = 490

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 125/324 (38%), Gaps = 45/324 (13%)

Query: 84  ATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           A I    P LV  N R    L      A  + G      L VTGT GK+S  S +    Q
Sbjct: 82  AAIPKTNPELVEANRRGIPVLLRPVVLADLMAGY---RTLMVTGTHGKTSTTSMLIVALQ 138

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G             SFA    L        A   ++  S  V     + S   L Q+R
Sbjct: 139 HCGYDP----------SFAVGGELNE------AGTNAHHGSGDVFVAEADESDGSLLQYR 182

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            + I +     TN+  DH+D+  + +AY +A    F E L  E   ++  DD  +  + +
Sbjct: 183 PNLIIV-----TNIEADHLDHFGSVEAY-SAVFDEFAETLGSEGVLVVCLDDPGAAALAR 236

Query: 259 RAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQ--------QVTISVEGKDFDFLFPLPG 308
           RAH  G RV   G   Q +   +     + + Q        Q+ ++ E         +PG
Sbjct: 237 RAHERGIRVRGYGSADQAEAGDVPVAGQLRDWQFKDTGATAQIQLAGESAPRTMRLSVPG 296

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NAL A      IG     VL+ L     V  RFE VG+     R++ DYAH    
Sbjct: 297 RHMALNALAAVVTAAEIGAAVDDVLDGLAGFEGVRRRFELVGS-VESVRVFDDYAHHPTE 355

Query: 369 LEMILKNIRTITS----GRIIVVF 388
           +  +L+ +  I +    GR +VVF
Sbjct: 356 VRTVLQAVSGIVAQQGFGRSVVVF 379


>gi|254805548|ref|YP_003083769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
 gi|254669090|emb|CBA07647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
          Length = 445

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLARETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC AIG+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAIGLSRNELLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 466

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 143/351 (40%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G  F+A+ G + D H F+ Q  A G +  +V     +    
Sbjct: 31  QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +   LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G +H      +  L Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     ++    AK  ++  +LP    AI+   D ++ E++  A
Sbjct: 194 GI-------LNIGTAHLGEFGGREGICRAKSEIYRHILPN-GVAIVPQQDDFTAEILDAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R+ + G  G  ++   V  +       +           P  GE  V NA  A  
Sbjct: 246 --KAHRISTFGVGGD-VYATDVELLPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +AIGI    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALAIGIGLEDIVQGLEQAQGAKGRLNFI---QKSPYLFIDDTYNANPTSM 350


>gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 451

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 166/384 (43%), Gaps = 75/384 (19%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R + AG +FVA+ G + D H F  QA+A GA A++V     L          
Sbjct: 24  ITAVSTDTRTLGAGALFVALRGERFDAHDFCEQAVAAGASALLVERELPLA--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVV ++ K L      +  +    +LA+TG+ GK++V      I ++ G        
Sbjct: 75  IPQLVVTDSLKGLGRLGRLVRERINPKVLAITGSCGKTTVKEMATAILRQEG------DV 128

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
            +T  +F  +N +  P                +T + +E       QHR   ++L A   
Sbjct: 129 LATAGNF--NNEVGVP----------------LTLLRLEP------QHRFAVMELGANHP 164

Query: 207 ---GSFTNLGR-----------DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                 T+L +            H++   + +  F+AK  +FE L  +   AI+ AD+ +
Sbjct: 165 GEIAWTTSLAKPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGL-GEGGTAIVNADNEF 223

Query: 253 SKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLP 307
             +   R  H A     S+  Q +  H + V  + N+Q     V ++ +G +      +P
Sbjct: 224 WPKWQARGIHCA----FSIEDQRQPFHARNV--VINQQGCAEFVMVTPQG-EISLTLAIP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL AA   +A+G   A V   LE +  V GRF        GG   VD  + + 
Sbjct: 277 GRHNVANALAAAAGTLALGASLASVKAGLELMAPVKGRF---CVQRWGGLTLVDDTYNA- 332

Query: 368 SLEMILKNIRTIT--SGRIIVVFG 389
           S+E +L  I  +T  SG  ++VFG
Sbjct: 333 SVESVLAGIDALTAMSGYKVLVFG 356


>gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 465

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 142/311 (45%), Gaps = 35/311 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I ++S DSR I +G +F AI G++ DGH F+  A+   A   VV +   ++ ++  +
Sbjct: 23  KEEIKQISIDSRTINSGELFFAIKGDRFDGHDFVMDALRAEAVGAVVDNE-QVERYN-NV 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            S+  I+ V++T + L   A          ++ +TG++GK++    V  + +    + F+
Sbjct: 81  DSDEVIIGVEDTTRALQDLAEYYRSLFDIPVIGITGSTGKTTTKDLVASVLE----TKFK 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T        +N    P  ++   + +Y        V VE +  GL       IK + 
Sbjct: 137 TLKTEG----NYNNEFGLPLTLFRLDS-TY------EAVVVELAMRGLGD-----IKTLC 180

Query: 207 -------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                  G  TN+G  H++   +Q+    AK  L E L P    AI+  DD Y +++   
Sbjct: 181 QIAQPQIGVVTNVGLTHLECLGSQENIAKAKSELVENL-PPTGTAILNGDDKYVRQM--- 236

Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALV 317
           A      +L  G + G  +   +V  +     +  +S + ++F    PL GE+ VYNAL 
Sbjct: 237 ADETKAEILYYGRESGNNLQASRVDNLGEAGLKFRVSRQLEEFTIDLPLAGEYNVYNALA 296

Query: 318 AAGLCIAIGID 328
           A G+ + +G++
Sbjct: 297 AVGVGLKLGLN 307


>gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
 gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
          Length = 470

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 20/334 (5%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I  ++  P       I  +S DSR I +G  F AI G++ DGH +   A+A GA  +VV
Sbjct: 1   MIAAMAGRPFGTLPEGITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVV 60

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S A       A  R   P++VVD+    L         +    I+AVTG+ GK++    +
Sbjct: 61  SEAR----LPAMGRLTVPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEML 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +   SG         ++++SF  +N    P  + LA+ +   +  GV  V +  +  G
Sbjct: 117 RHVLSPSGKVH------ASVASF--NNHWGVP--LTLAR-MPDDTDYGVFEVGM--NHPG 163

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +  +  I+      T +   H+   ++ +    AK  +FE L P     ++  D+   
Sbjct: 164 EIRPLVAMIRPYVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPG-GHVVLNRDNDQF 222

Query: 254 KEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + + A + G   + S G   K    L +         + +++ G+  +     PG   
Sbjct: 223 NFLDRTAQSLGVEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHI 282

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             NAL A G+   +G D    +  L  L    GR
Sbjct: 283 AENALAALGVVRIVGADMEKAIAALATLKPEKGR 316


>gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 456

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 160/374 (42%), Gaps = 38/374 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W +  I  V  DSR I++G +F+ +V  + DGH ++  AI  GA A +       +D S
Sbjct: 19  EWEDISITSVCFDSRKIESGALFIPLVA-ENDGHKYVEAAINGGAVATLWQ-----EDHS 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             I  +  +L V +T   L         K    ++A+TG++GK++       +       
Sbjct: 73  ENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVL------ 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202
           + Q     T ++F  +N +  P        ++ LS +  T V V     G+D++ +LD +
Sbjct: 127 ATQFNVHKTFANF--NNEIGVP--------MTILSMEPNTEVLV--VEMGMDRYGQLDFL 174

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             +A       T +G  HI++  T+    +AKM +    L ++   +I  D+     +  
Sbjct: 175 SKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHG-LKEDGELVINGDEPL---LTT 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALV 317
           +A      VL+ G       ++ +  + +  + +  V    + DF   + G + V+NAL 
Sbjct: 231 KAKEVSQEVLTFGSLDNN-DMRAMDIVSDATKTSFKVATWPEVDFTINMIGAYNVFNALA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A  +     I    + + L    +   R E++   + G +I  D Y     +++ +L   
Sbjct: 290 ALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKN-GAKILSDVYNSNPTAVKEVLYAF 348

Query: 377 RTI-TSGRIIVVFG 389
             + T G+ I+V G
Sbjct: 349 EQVPTEGKRIIVLG 362


>gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
 gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
          Length = 465

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 34/345 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  + +DSRH + G +F+A+ G + D H F+ Q   QG +  +V            I  +
Sbjct: 37  IKRILTDSRHAEVGDVFLALKGERFDAHDFVAQVATQGCQIAIVEHP---------IDVD 87

Query: 90  TPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R       + 
Sbjct: 88  IAQLVVKDTRLALGDLGAYRRKQNAHLKVIALTGSSGKTTTKEMLGSILSR-------LA 140

Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIA 206
           PT  I+    +N L  P  +  L K   Y   + G +H      +  L Q  + GI    
Sbjct: 141 PT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSNLVQPHVAGI---- 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+G  H+     ++    AK  ++  +LP +  AI+ A D ++ ++   A      
Sbjct: 196 ---LNIGTAHLGEFGGREGICRAKSEIYAHILP-QGVAIVPAADDFTADIRNSAQ--AHS 249

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            LS G QG  ++  ++       +  +           P  GE  V NA  A    +AIG
Sbjct: 250 NLSFG-QGGDVYATEIELKPQSVRFNLHTPQGQRVVNLPFAGEHNVQNATAATAFALAIG 308

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           I+   ++E LE+     GR  F+        +++D  + +N   M
Sbjct: 309 IELDDIVEGLEQAQGAKGRLNFI---QHQNHLFIDDTYNANPTSM 350


>gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
 gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB056]
 gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB058]
 gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB059]
 gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
          Length = 466

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q +A G +  +V          
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERP------- 83

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             I +    LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G  H      +  + Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     +     AK  ++  +LP +  AI+   D ++ E+ + A
Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +++S G  G     +      +      + +G  F  L P  GE  V NA  A  
Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+G+    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKTPHLFIDDTYNANPTSM 350


>gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
 gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
          Length = 466

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 144/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G  F+A+ G + D H F+ Q  A G +  +V     ++   
Sbjct: 31  QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVE--- 87

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G +H      +  L Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     ++    AK  ++  +LP    AI+   D ++ E++  A
Sbjct: 194 GI-------LNIGTAHLGEFGGREGICRAKSEIYRHILPN-GVAIVPQQDDFTAEILDAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R+ + G  G  ++   +  +      T+           P  GE  V NA  A  
Sbjct: 246 --KAHRISTFGVGGD-VYATDIELLPQSTNFTLHTPQGISAVKLPFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +AIGI    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALAIGIGLEDIVQGLEQAQGAKGRLNFI---QKSPYLFIDDTYNANPTSM 350


>gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412]
 gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
 gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412]
 gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
          Length = 452

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 140/333 (42%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G          +N +  P  +     L          + + A+  G     +   
Sbjct: 128 TLYTAGNL--------NNDIGVPMTL-----LRLTPEYDFAVIELGANHQGEIAWTVSLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
           +  A    NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK72]
          Length = 456

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 150/378 (39%), Gaps = 54/378 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    +     DSR I++G +FV + G + DGH FIP A AQGA A +          S
Sbjct: 20  QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------S 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
               +    L+VD+        A     K   ++LAVTG++GK++    + Q+       
Sbjct: 69  ERPVAEGAYLLVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKT 128

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   T+    +D                 +   G  H+         D 
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167

Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           H L  + K   G  T +G  H+++  ++      KM++ + L  +E+  +I   D    E
Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL--RENGLLIVPADKIVNE 225

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +      GC ++  G     I L ++    N      +   +  D   P+ G++   NA
Sbjct: 226 FLP----TGCDLVRFGPDAD-IFLTRLEERKNSLSFECNFLEQRIDL--PVTGKYNATNA 278

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           ++AA   +  G+    + +   +L +   R E+    + G  I  D Y     ++ +IL+
Sbjct: 279 MIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILE 337

Query: 375 NIRTITS---GRIIVVFG 389
              TI +   GR + V  
Sbjct: 338 TFSTIPANPGGRKLAVLA 355


>gi|300788096|ref|YP_003768387.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
 gi|299797610|gb|ADJ47985.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
          Length = 465

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 18/227 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D+H T +AY     ++F E + +  P    I+  DD  + ++ ++A + G R
Sbjct: 186 TNVEPDHLDHHGTAEAY----TKVFTEFVSRIVPGGLLIVCGDDPAADDLGRQAEDLGVR 241

Query: 267 VLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           V   G      G    L+ V A  +   V + ++G++      +PGE    NA+ A    
Sbjct: 242 VRRYGRTATGPGDARILEYVPA-PDGGVVRLVLDGEEVSVRVAVPGEHMALNAIAALLAG 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTIT 380
           I +G     +++ L     V  RFEF G   R G  R+Y DYAH    +   L+ +RT  
Sbjct: 301 IELGAPVPGLVDGLAAFGGVRRRFEFKG---RAGDVRVYDDYAHHPTEVAAQLRAVRTAA 357

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            SGR+IVVF            +    AL LAD  +V D     E+PE
Sbjct: 358 GSGRVIVVFQPHLYSRTKTFSVEFAEALSLADEVVVLDVYGAREEPE 404


>gi|145296119|ref|YP_001138940.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           R]
 gi|166224333|sp|A4QFM2|MURC_CORGB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3868935|dbj|BAA34293.1| MurC [Corynebacterium glutamicum]
 gi|140846039|dbj|BAF55038.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 24/199 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D+ +T +AYF    ++F++   + +P    ++  +D ++ E+ +R+   G +
Sbjct: 193 TNVEPDHLDFFKTPEAYF----QVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248

Query: 267 VLSVGYQGKFIHLKKVCA---------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            +  G         +V A         +    + TI+++G++   +  +PG+  V N   
Sbjct: 249 TVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAA 308

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSLEMIL 373
           A      +G D   ++E L     V  RFEF G        G  IY DYAH    +  +L
Sbjct: 309 ALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVL 368

Query: 374 KNIRT----ITSGRIIVVF 388
              RT       GR+IV F
Sbjct: 369 SAARTRVKAAGKGRVIVAF 387


>gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Brevibacillus brevis NBRC 100599]
          Length = 460

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 64/364 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  D+R +  G +FVA+ G   DGH F+ QA  QGA A +VS+          I  +
Sbjct: 26  LSSVHFDTRELTVGSLFVALTGGARDGHDFLLQAAEQGAVAALVSN-------QEKIPGD 78

Query: 90  TP-----ILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGL 142
            P     ILV D  R F  L A+ R     P   +A+TG+ GK++V   V  +   RS +
Sbjct: 79  LPNDFGLILVNDTLRGFQKLAAAYRKSFSFPR--IAITGSIGKTTVKDIVAHVLASRSPV 136

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                    T  +F  +N +  P        LS L  +     + +A+   L  +    I
Sbjct: 137 -------YKTYKNF--NNHIGVP--------LSLLQMEE----NHQAAVLELGMNHAGEI 175

Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-------LLPKESPAIIYA 248
            L+A          T +G  HI+Y  T++    AK  L          LL K+S  +   
Sbjct: 176 DLLASLVQPDISVITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLLNKDSEYLRLI 235

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLP 307
              Y  E+M  + N    + +          +++  +    +  + +  G+ F+   PL 
Sbjct: 236 AHLYPGELMYYSVNEKADIWA----------EQIETVEGGTRFKVYLASGEYFEAFLPLH 285

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A  +   +G+D+  +   L  + +   RFE +  N +   +Y+  A+ ++
Sbjct: 286 GRHSVLNALPAVAIAKRLGMDTEQIAYALSTVQLSAMRFEQI--NGKHATVYISDAYNAS 343

Query: 368 SLEM 371
            + M
Sbjct: 344 PVSM 347


>gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia fergusonii ECD227]
          Length = 452

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 134/326 (41%), Gaps = 41/326 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +         +
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            TP   Y    L      G  H    A +  L +             
Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  +F  L P+   AI+ AD+           S++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAN----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346
           L +++G     +   L  L  VPGR 
Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|183983182|ref|YP_001851473.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M]
 gi|229620048|sp|B2HGR5|MURC_MYCMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|183176508|gb|ACC41618.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M]
          Length = 488

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 13/190 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ + +AY        E L P  +  ++ ADD  S  + +R+   G RVL 
Sbjct: 189 TNIEADHLDFYGSTEAYVGVFDAFVERLAPGGA-LVVCADDPGSAALAERSAELGIRVLR 247

Query: 270 VGYQGKFIHLKKVCAIHNKQ-------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G  G          +  +Q       Q+ ++ E         +PG     NAL A    
Sbjct: 248 YGSAGHAEAALAATLVSWEQRGTGAVAQIQLAGEADPRSMRLSVPGRHMALNALGALLAA 307

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
           I +G     VL+ L     V  RFE VGT +   R++ DYAH    +   L+ +R++   
Sbjct: 308 IEVGAPVGEVLDGLAGFEGVRRRFELVGT-AESVRVFDDYAHHPTEVRATLEAVRSVVRQ 366

Query: 381 --SGRIIVVF 388
             SGR++VVF
Sbjct: 367 SGSGRLLVVF 376


>gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Erwinia sp. Ejp617]
          Length = 452

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 131/332 (39%), Gaps = 23/332 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I QL+   +   +  I +V++D+R   AG +F+A+ G + D H F+  AI  G   ++VS
Sbjct: 9   IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               + D S         +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  KRLPV-DVSQ--------VVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G          +N +  P  +   K     +      + + A+  G 
Sbjct: 120 AILRECGETLYTAGNL--------NNDIGVPLTLLRLKPQHRYAV-----IELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++       NL   H++   +      AK  +F  L P    AII  +     
Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINGESHDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S G      +   V          +     D D   PLPG   + N
Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFILHSPQGDVDVTLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           AL A+ L +++G   + V   L  L  VPGR 
Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRL 317


>gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
 gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli AA86]
 gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
          Length = 452

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 136/333 (40%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA        +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAANN----DFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLVNLKAVPGRL 317


>gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
 gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
          Length = 454

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +I EV++D+R IQ+G +F+A+VG + D H F  QA  +GA A++V     +       
Sbjct: 21  EVQIQEVTTDTRAIQSGALFIALVGERFDAHDFCQQAADKGAAALIVERQLDI------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P ++V +++  L L  + ++ +     LA+TG+ GK++V   V  I    G   + 
Sbjct: 74  --DIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCGKTTVKEMVASILSGLGQVLYT 131

Query: 147 IG--------PTSTISSFAQDN 160
            G        P + + S  QD+
Sbjct: 132 AGNFNNDIGVPLTLLRSTPQDD 153


>gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TW10509]
          Length = 452

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 134/326 (41%), Gaps = 41/326 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +         +
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            TP   Y    L      G  H    A +  L +             
Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  +F  L P+   AI+ AD+           S++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAN----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346
           L +++G     +   L  L  VPGR 
Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
 gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
          Length = 426

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 104/455 (22%), Positives = 184/455 (40%), Gaps = 75/455 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +S+ ++ G +FVA+ G K DGH FI +A+  GA AI+            T+ S+  I +V
Sbjct: 12  NSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAE--------RKTVDSDR-IFLV 62

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +++   L+  A    G     ++ VTG+SGK++    +  + +            +  S 
Sbjct: 63  ESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLK------------NKRSV 110

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F     + T   + L+  L+    + +  + + AS  G   H             N+G  
Sbjct: 111 FKTPGNMNTEYGLPLS-ILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSA 169

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQ 273
           H+++  T++     KM + +      +   ++ D    +EV        C  + L  G +
Sbjct: 170 HLEFFGTRERIMETKMEIIKHSKENATAVTLFDDPDLRREV-------PCYRKTLFFGKE 222

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF---QVYNALVAAGLCIAIGID 328
           G    LK           TI+ E + FD LF   L G +   Q+ N  +AA LC+   + 
Sbjct: 223 GGDSVLKDWWYYEGS---TIA-EFEAFDSLFTVKLSGYWNGGQLLN--IAASLCVMRALG 276

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             + +  L  L  VPGRF       + G + VD  + ++      S+E +L+       G
Sbjct: 277 ETVDIFDLASLKTVPGRF---NVREKKGVLIVDDTYNASPEAFQTSIEALLR-----FPG 328

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEK 427
           R   V G     G+R +     +G+  L++ D   +    P            +S+DPEK
Sbjct: 329 RRFAVVGAMKELGERSKEFHEELGE-RLNVLDGVYIFLSEPEAEWIKSKKIILKSDDPEK 387

Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
           I  ++   +      + K +R   I   +EM  K+
Sbjct: 388 IAKDLASRVTEGDVVLFKASRAVRIEKVLEMFEKE 422


>gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
 gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
          Length = 449

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/379 (20%), Positives = 161/379 (42%), Gaps = 47/379 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V +D+R    G +++AI G+  DGH ++  A+  GA A++     S QD  + 
Sbjct: 21  EDRLVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLETALKNGALAVL-----SQQD--SQ 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-------ICQ 138
           +R   P+++VD+TR+  +  A  L       ++A+TG++GK+++  ++ Q       + +
Sbjct: 74  VR---PLVLVDDTRQAYADIAHYLRQLFSGKLVAITGSNGKTTIKEWLSQCLAERVKVLK 130

Query: 139 RSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
               ++ QIG   T+    +++++    T  S +     L+ +++  +  +S  + SH  
Sbjct: 131 TEKNNNNQIGVPLTLLGLKKEHQVAVIETGTSFVGEIAKLAQITTPDIAIISNASGSHYE 190

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               ++GI    G+                             L  E  AI+  DD +  
Sbjct: 191 GFGSIEGIAKEKGALLT-------------------------GLTAEGVAILNHDDPWFD 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +       C     G  G  +  K+V       +  +  +G+++     +PG+ QV N
Sbjct: 226 YWVGLLDKRACVSFGFG-SGADLVAKQVELFSQSSKSILCYQGEEYVLHLAVPGKHQVAN 284

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+      + +G+      E L +  V+  R EF   NS+   +   Y  +  S+E  + 
Sbjct: 285 AMAVLLALLNLGVTFESACESLSRPLVIDKRLEFQYLNSQALVLNDCYNASPKSVEAAID 344

Query: 375 NIRTITSGRIIVVFGCGGD 393
            + + + G+  +V G  G+
Sbjct: 345 VLMSQSQGQKWLVLGALGE 363


>gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
 gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
          Length = 445

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            IS +        PL G     N + A  LC AIG+    +LEH++    +P R E +G 
Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAIGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 451

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 163/372 (43%), Gaps = 39/372 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  R I  V+ DSR I+   +F+   G   DGH FI QA+  GA   V S +    + S
Sbjct: 20  QYLSRSIKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQALKDGA---VASFSEKGTELS 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
             +    PI+ V++T + L   A + Y KH    ++AVTG++GK++    ++ +      
Sbjct: 77  EDVEG--PIIWVEDTLQALQDLA-KAYLKHVNPKVIAVTGSNGKTTTKDMIESVLT---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGMP--------LTILDLDEDTEISILEMGMSGF--HEIEL 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256
           +  IA       TN+G  H+    +++    AK  +   L  K++   IY  D+      
Sbjct: 176 LSTIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLTPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNA 315
           +K+   A  +++SVG  G    L  VC + + +   I      D  ++ P+ G   + NA
Sbjct: 234 VKQIQQA--KLISVGL-GDANSL--VCHVDDVETEGIGFTINNDESYVLPILGIHNMKNA 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +A  +   +G+  A + E++  + +   R E   T+     I   Y  +  S++  +  
Sbjct: 289 AIAIAVGHELGLPYATIKENIRHVQLTGMRMERHQTDDNVTVINDAYNASPTSMKAAIDT 348

Query: 376 IRTITSGRIIVV 387
           + ++   +I+++
Sbjct: 349 LSSMEGRKILIL 360


>gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
 gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
          Length = 452

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 29/241 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R +Q G +FVA++G++ DGH ++ QAI +GA A+++S    +           P 
Sbjct: 28  VSTDTRTLQPGDLFVALIGDRFDGHEYVQQAIEKGASAVLISKRMEV---------TVPF 78

Query: 93  LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V +T + L      +RL  ++P  ++A+TG+SGK++V   +  + ++           
Sbjct: 79  LQVADTTEALGRLGLYNRLRFENP--VVAITGSSGKTTVKGMMATLLRQQN--------E 128

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             ++    +N +  P  +     L    S     + + AS  G   +  +  +      T
Sbjct: 129 VLVTRGNLNNHIGAPLTL-----LRLSDSDDYAVIELGASGLGEIAYTAELARPTVSILT 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G  H++   + +     K  + +  L  +  A++ AD  Y +E  KRA     RV+S 
Sbjct: 184 NAGNAHLEGFGSVEGIVKTKGEIIDA-LADDGVAVLNADSPYFEEWQKRA--GSRRVISF 240

Query: 271 G 271
           G
Sbjct: 241 G 241


>gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 451

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 156/372 (41%), Gaps = 39/372 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  + I  V+ DSR I+   +F+   G   DGH F+ QA+  GA A      + + D  
Sbjct: 20  QYLRQTIKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQALKDGAGASFYEKGHDIDD-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                  PI+ VD+T   L   A + Y KH    ++ VTG++GK++    ++ +      
Sbjct: 78  ---NVKGPIIWVDDTLIALQQLA-KAYLKHVNPKVIGVTGSNGKTTTKDMIESVLH---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201
           + F++  T        +N +  P        L+ L     T +S+ E    G   H ++ 
Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDLDTEISILEMGMSGF--HEIEL 175

Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           +  IA       TN+G  H+    +++    AK  +    L KE   I   D+   +  +
Sbjct: 176 LSNIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIG-LKKEGTFIYDGDEPLLEPHV 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNA 315
           K+  +A C  LSVG +        VC + + +   +  S+ G +  +  P+ G   + NA
Sbjct: 235 KKIKHAKC--LSVGLKQDN---ALVCEVEHSENDGIAFSINGNEH-YKLPILGIHNMKNA 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +A  +   +G+    +  ++  + +   R E   T+     I   Y  +  S++  +  
Sbjct: 289 AIAIAIGHELGLKYETIQHNINHVQLTGMRMERHITDDDITIINDAYNASPTSMKAAIDT 348

Query: 376 IRTITSGRIIVV 387
           +  +   +IIV+
Sbjct: 349 LSQMEGRKIIVL 360


>gi|29337227|sp|P94335|MURC_CORGL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 486

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 24/199 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D+ +T +AYF    ++F++   + +P    ++  +D ++ E+ +R+   G +
Sbjct: 193 TNVEPDHLDFFKTPEAYF----QVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248

Query: 267 VLSVGYQGKFIHLKKVCA---------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            +  G         +V A         +    + TI+++G++   +  +PG+  V N   
Sbjct: 249 TVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAA 308

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSLEMIL 373
           A      +G D   ++E L     V  RFEF G        G  IY DYAH    +  +L
Sbjct: 309 ALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVL 368

Query: 374 KNIRT----ITSGRIIVVF 388
              RT       GR+IV F
Sbjct: 369 SAARTRVKAAGKGRVIVAF 387


>gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia fergusonii B253]
          Length = 452

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 134/326 (41%), Gaps = 41/326 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +         +
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            TP   Y    L      G  H    A +  L +             
Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  +F  L P+   AI+ AD+           S++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAN----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346
           L +++G     +   L  L  VPGR 
Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
          Length = 452

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGAIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G   A +   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLAAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli M863]
 gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli STEC_7v]
          Length = 452

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 134/326 (41%), Gaps = 41/326 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +         +
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            TP   Y    L      G  H    A +  L +             
Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  +F  L P+   AI+ AD+           S++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAN----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346
           L +++G     +   L  L  VPGR 
Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|154252859|ref|YP_001413683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156809|gb|ABS64026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
          Length = 479

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 134/287 (46%), Gaps = 22/287 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR ++AG +FVAI+G   DGH ++  A+ +GA A +VS+       +  +R+  P+
Sbjct: 29  VSIDSRTLEAGDLFVAIIGENSDGHAYVEGALKKGAAAAIVSAP------TEAMRAAGPL 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +T   L+        +    ++AVTG+ GK+     ++ I    G         +T
Sbjct: 83  VIVTDTLAALNALGRAARARTKAKVVAVTGSVGKTGTKEALKLILSEQG---------AT 133

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +S A  N L    P+ LA+ +   +  G+  V +          +L  ++      T +
Sbjct: 134 HASAASYNNLWG-VPLSLAR-MPAATRFGIFEVGMNHPGEITPLSKL--VEPFVSLITTV 189

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVG 271
              H+++  + +   +AK  +F+  L K   AI+  D+ + + +  +A  +G  R++S G
Sbjct: 190 EAVHMEFFDSVEQIADAKGEIFDG-LQKGGVAILNRDNPHYERLRAKAEKSGAGRIISFG 248

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            ++     L+K     +   V+ ++ G+   +   +PG   V N+L 
Sbjct: 249 EHEEADARLEKAALKEDCSCVSATICGQKVTYKLAVPGRHIVMNSLA 295


>gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 457

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 151/365 (41%), Gaps = 30/365 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + V++DSR ++ G  F+ +VG K DGH +I  +  QG     VS   + +D +     
Sbjct: 25  EFSNVTTDSRQVRKGDFFIPLVGEKFDGHDYIITSFEQG-----VSGCLTQKDTAG--YE 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ++ V++T   L + +S    K     + +TG+ GK+S    V  +  +      +  
Sbjct: 78  GKVVIKVEDTLSALRMLSSYYRKKFDIPFVGITGSVGKTSTKDMVSSVLNK------KFN 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  +F  +N +  P  ++     +  S+     V +  S  G        +K     
Sbjct: 132 VLKTQGNF--NNEIGVPLTVF-----NLESTHEAAVVEMGMSGFGEISRLTSIVKPDIAI 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI+   ++Q    AKM +FE  L  +   I+  DD     +    +    R +
Sbjct: 185 ITNIGLSHIEKLGSRQNILKAKMEIFEG-LKSQGLVILNGDDNL---LFGLKNLLNYRTV 240

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             G +    +     +   +Q  +  I++  +++    P+PG   ++NAL A    I + 
Sbjct: 241 FYGMEDGLDYQAYNISSQGEQGTSFEITIGNENYKVHVPVPGIHNIHNALAAIAAGIELN 300

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRI 384
           I    ++E + +    PG+      +  G +I  D Y  +  S+E  +  ++ I    R 
Sbjct: 301 IPVKDIIEGIGEFS--PGKMRLNIMDHNGIKIINDAYNASPQSMEAAINVLKDIAGDNRT 358

Query: 385 IVVFG 389
           I V G
Sbjct: 359 IAVLG 363


>gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 472

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 35/229 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F A  G + DGH +  +A+  GA A++ +    +           P +VV
Sbjct: 34  DSREVRQGSLFAAFAGERVDGHDYAERAVEAGAVAVLAARPVGV-----------PAIVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+    L   A     +    ++A+TG++GK+S    + QI +R   + +  G       
Sbjct: 83  DDVVAALGALARAAVERLGTTVVALTGSAGKTSTKDLIAQILERKAPTVWTPG------- 135

Query: 156 FAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            + +N +  P     A A +      + ++G+ H+   A   GL   R+       G   
Sbjct: 136 -SLNNEIGLPLTALRATAETRHLVLEMGARGIGHIEYLA---GLTPPRI-------GLVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           N+G  HI    +++A   AK  L  E+LP++  A++ ADD   + +  R
Sbjct: 185 NVGSAHIGEFGSREAIAQAKGELV-EVLPEDGAAVLNADDPLVRAMASR 232


>gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 507

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 150/360 (41%), Gaps = 46/360 (12%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +D+R IQAG  F+AIVG   DGH F+  AI +GA A++VS     Q   A      P L 
Sbjct: 51  TDTRKIQAGDTFLAIVGENFDGHNFVTAAIEKGAIAVIVS-----QPIEALA---VPQLK 102

Query: 95  VDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           VD+TR      A+    +H +  ++A+TG+SGK++V   ++ I  +   ++     T+ +
Sbjct: 103 VDDTRLAFGQIAAYRRQQHAKLKVIALTGSSGKTTVKEMLRHIFTQVEAANNAEQSTTLV 162

Query: 154 SSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           +    +N    P  +  L +   Y   + G  HV   A +  +       +K       N
Sbjct: 163 TRGNLNNDFGVPMMLLELEQQHRYAVLELGANHVGEIAYTTAM-------VKPDVACILN 215

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H+     +      K  +++  L + S A++  DD Y++++   A      V+  G
Sbjct: 216 IGTAHLGEFGGRDNIAKTKAEIYQS-LTESSTAVVPFDDDYTQQLTAVAKQHTPHVIHYG 274

Query: 272 YQGKFIHLK------------------KVCAIHN--KQQVTISVEGKDFDFLFPLPGEFQ 311
           +Q    HL+                  +  A+ +  K    +  +    D   P+ GE  
Sbjct: 275 WQ----HLQHNSDKADSSQPQVYATEVQTTALQSCFKLHFDLDSQTSVVDITLPMSGEHN 330

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL AA    A GI   ++   L +     GR    G  + G    +D  + +N   M
Sbjct: 331 VSNALAAAACAYASGIAPEVIAAGLNQATSSKGRL---GRQTLGMHHIIDDTYNANPNSM 387


>gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 144

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 6/122 (4%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQ 135
            Q
Sbjct: 120 AQ 121


>gi|307296816|ref|ZP_07576634.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
 gi|306877729|gb|EFN08955.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
          Length = 925

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 163/402 (40%), Gaps = 54/402 (13%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +LF     G+ P  I A+TGT+GKS+ A  V +I  + GL+   +G  +T   +   + L
Sbjct: 508 ALFPPGRRGRIP--IFAITGTNGKSTTARMVGRILCQHGLN---VGMATTSGVYFNGHLL 562

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-- 220
                     A   L +  V    +E +  G+ +  L   +   G+  N+  DH+     
Sbjct: 563 KEADASGPRSARMVLRNPAVDAAVLETARGGILREGLGYDRADVGAVLNVTADHLGLKGI 622

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T +A  + K  + E +  +   +I+ ADD      ++ A +AG R++    +G     +
Sbjct: 623 DTVEALADVKSVVVENVA-RRGFSILNADDPM---CLRIARHAGGRIVWFSLEGGARMAE 678

Query: 281 KV---------------------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +                       +H   Q T+ +   +         EF + NAL A 
Sbjct: 679 TLRRHLAAGGMAVLREADEGGGEIVVHRGGQRTVLMHASEIPATLGGIAEFNIANALAAV 738

Query: 320 GLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN---SLEMI 372
            +C+A G+ +  V + L          PGR   +   S G R+ VDYAH      +L  +
Sbjct: 739 AMCMAHGVPAETVRDGLRAFTSSFEDSPGRLNMM--ESHGRRVIVDYAHNPAGLIALGQV 796

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-----DNPRSEDPEK 427
           +  +R    GR I +    GDR       MG+IA  + D  I  +       PR +    
Sbjct: 797 VDRLRG-GHGRAIGMVSIPGDRRDCDIVEMGRIAAGIFDDIIFREAPDGRGRPRGQTNAL 855

Query: 428 I-RAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVV 464
           + +  +  G+P  +E+ +RI     A+  A+ M    D+LV+
Sbjct: 856 LTQGALNAGVP--MERVHRIIDEFAAVDAALRMARPGDLLVI 895


>gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
 gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
          Length = 453

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F+ QA+A GA A++V            
Sbjct: 20  EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 462

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 152/377 (40%), Gaps = 46/377 (12%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W +  +  V+ DSR +QAG +F+ ++G   DGH +I  AI  GA A + +S     D + 
Sbjct: 21  WPDVNVTGVAFDSRKLQAGDLFIPLMG-ANDGHQYIQSAIEHGAVATLWAS-----DHAD 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P+++V +T   L         K    ++AVTG++GK++    +  +        
Sbjct: 75  DVPEDLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVL------G 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIK 203
            Q   T T ++F  +N++  P        ++ LS +  T V V     G+D    LD + 
Sbjct: 129 TQFNVTKTHANF--NNQIGVP--------VTLLSMEPNTEVVV--VEMGMDHFGELDFLS 176

Query: 204 LI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSK 254
            +        T +G  HI++  T+    +AKM +   L  KE    I+  D       +K
Sbjct: 177 RLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGL--KEDGTFIFNGDEPLLQERAK 234

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           EV +     G            +    +     + Q   S+   D  +  P+ G + V N
Sbjct: 235 EVSQHQRTFGLD------DTNTLAGSDITTSRAQTQFKTSL-WPDNTYTIPMMGAYNVNN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           AL A  +     I  A   + +        R E++ T  RG  I  D Y     +   +L
Sbjct: 288 ALAALLVADTFHIRPAAAQQAIASFVPTENRTEWL-TGYRGEAILSDVYNSNPTAARRVL 346

Query: 374 KNIRTI-TSGRIIVVFG 389
                + T G+ I V G
Sbjct: 347 AAFAAVPTKGQRIAVLG 363


>gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 452

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 141/338 (41%), Gaps = 52/338 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  VS+D+R I++G +FVA+VG + D H F  QA + GA A++VS A  +Q      
Sbjct: 21  DTAIESVSTDTRTIESGSLFVALVGERFDAHDFAGQAASAGASALLVSKAVDVQ------ 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L+V++T+  L      ++       +A+TG+ GK++V   V  I  + G   + 
Sbjct: 75  ---VPQLLVEDTKVALGKLGQFVHQVCQTPTVAITGSCGKTTVKEMVASIMTQKGQVLYT 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ----------GVTHVSVEASSHGLDQ 196
            G      +F  +N +  P        L+ L SQ          G  HV   A +  L  
Sbjct: 132 AG------NF--NNDIGVP--------LTLLRSQPEDDFAVIELGANHVGEIAYTTQL-- 173

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYS 253
                +        N+   H++   +      AK  +++ L P  S AI+  D     + 
Sbjct: 174 -----VNPDVAMVNNVAAAHLEGFGSMDGVKRAKGEIYQGLKPG-SVAIVNLDSNGGEHW 227

Query: 254 KEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +EV+  K          S  Y+ + + +     ++ +   TI      FD    + G+  
Sbjct: 228 REVLSDKTVKTFSLSDNSAEYKARNVTMN----VNGEASFTIQTPETSFDVKLGIIGQHN 283

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           V NAL A  L + +G  + ++   L  L  V GR E V
Sbjct: 284 VSNALAATALSLELGATTEMIASGLANLSKVKGRVETV 321


>gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 452

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G   A V   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 453

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F+ QA+A GA A++V            
Sbjct: 20  EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
 gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
          Length = 458

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 141/351 (40%), Gaps = 34/351 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA
Sbjct: 7   KQVEQMINGTGL-AKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESGA 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +           A    N P++ V++T   L + A     +    ++ VTG++GK+S
Sbjct: 66  VATLWMKGV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTS 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V  +      + F++  T    +F  +N +  P  I     L+   +  V  + + 
Sbjct: 120 TKDIVTSLLA----TKFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMG 166

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +E    +Y 
Sbjct: 167 MSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYN 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            D           N     ++ G      Y    + L +    H K         ++  F
Sbjct: 225 GDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             P+ G+  VYN L +  +    G+    + + L  L +   R E V TNS
Sbjct: 279 YIPVLGKHNVYNTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNS 329


>gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter
           uraniireducens Rf4]
 gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter uraniireducens Rf4]
          Length = 468

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 158/371 (42%), Gaps = 41/371 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS+DSR + AG +FVA+ G + DGH ++  A+A+G  A +V++       +     N
Sbjct: 23  VSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVARGVRAFLVAA----DRLAGKQPPN 78

Query: 90  TPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             I V V +T + L   A+    +    ++ +TG++GK++    +  I  ++G      G
Sbjct: 79  DVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTTKEMLATILAQTGPGLKTSG 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
             + +             P+ L + L+      V  + +       +   +D +  +A  
Sbjct: 139 NLNNLIGL----------PLMLLR-LTKRDRWAVLEMGMS------EPGEIDRLAEMANP 181

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN    H++   + +A   AK  LF   L  +  A+  ADD     + +    AG
Sbjct: 182 RIGVITNAFTAHLESMGSVEAVAKAKGELFMR-LKTDGWAVYNADDPL---ISRCPAPAG 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            + LS G +G  +  + + ++  +  + T+ + G D        G   VYNAL AA    
Sbjct: 238 VKRLSFGLRGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYGLHNVYNALAAAAAAH 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM-----ILKNIRT 378
            +G+D  L+   LE+      RF         G + VD ++ +N   M      L++IR 
Sbjct: 298 LLGVDPELIRSGLEEFTPYDKRFSLEEIR---GVVLVDDSYNANPASMAAALVTLRDIR- 353

Query: 379 ITSGRIIVVFG 389
               R I + G
Sbjct: 354 -EESRAIAILG 363


>gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica ST-640]
 gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica 020-06]
          Length = 445

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQRAGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|15676332|ref|NP_273468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis MC58]
 gi|30316129|sp|Q9K0Y4|MURD_NEIMB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|7225643|gb|AAF40858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis MC58]
 gi|316984929|gb|EFV63885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
 gi|325140935|gb|EGC63442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis CU385]
 gi|325199608|gb|ADY95063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
          Length = 445

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I  +        PL G     N + A  LC AIG+    +LEH++    +P R E +G 
Sbjct: 263 LIVTQD------IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
 gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
          Length = 453

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 161/367 (43%), Gaps = 37/367 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V  D+R I+   I+ AI G + +G+ F+ +A ++GA   +V     L D + T    T
Sbjct: 25  NSVCIDTRKIEKNNIYFAINGERFNGNKFVIEAFSKGASIAIVDEI--LFDLNNTDNLQT 82

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRSGLS 143
            I V D  +  L+L A+    K    ++ VTG+ GK+S    +A+F+ +   + +  G  
Sbjct: 83  VIKVEDTEKALLNL-ANYYRKKLGLKVIGVTGSCGKTSTKDLIAAFLSEKYKVFKTKGNF 141

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + QIG    I        L   S I +A     +S+ G   + V A+    D        
Sbjct: 142 NNQIGLPLMI--------LELDSSIDVAVLEMGMSNLG--EIDVLANCARPD-------- 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+G  HI+  +TQ+    AK  +F     + +  II  +D    E + +  + 
Sbjct: 184 --IAVITNIGLSHIENLKTQENILKAKSEIF-NYFDETNTLIINGED----ENLLKIKDK 236

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +L +GY  ++ ++   +    +K   T+  + ++  F  P+ G+  + N+++A  + 
Sbjct: 237 CFEILKIGYNHEYDVYAFNIILEEDKTTFTVKDKNEESIFTIPMAGKHNILNSMLAVEVA 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             + +    + + ++ L     R + +  N +   I   Y  + +S++  +  + +  +G
Sbjct: 297 KKLNVTFDEMKKGIKNLEATSMRLQVIKRN-KITIINDCYNASPDSMKSSMDVLSSYKTG 355

Query: 383 RIIVVFG 389
           R I + G
Sbjct: 356 RKIAILG 362


>gi|121635446|ref|YP_975691.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis FAM18]
 gi|158513150|sp|A1KVL5|MURD_NEIMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120867152|emb|CAM10919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis FAM18]
          Length = 445

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 116/256 (45%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+   KD     PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIAT--KDI----PLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -KKNGVVFIDDSKGTN 330


>gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 452

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 166/392 (42%), Gaps = 42/392 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ + KI  V+ DSR +Q   +F+   G   DGH F+ Q+I  GA A    +    Q+  
Sbjct: 20  QFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQSIQDGAAAAFYQTG---QEID 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           +++    P++ V +T   L   A          ++AVTG++GK++    ++ + +    +
Sbjct: 77  SSLEEQ-PLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLK----T 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202
            F++  T        +N +  P        L+ L     T +S+ E    G   H ++ +
Sbjct: 132 QFKVKKTQG----NYNNEIGMP--------LTILELDYDTDISILEMGMSGF--HEIELL 177

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             IA       TN+G  H+    ++     AK  +   L  K++   IY  D    E + 
Sbjct: 178 SSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGL--KDNGIFIYDGD----EPLL 231

Query: 259 RAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYN 314
           + H A     +++SVG +    H   VC I + Q   I+    + + +  P+ G   + N
Sbjct: 232 QPHVAQVKHAKLISVGLEQ---HNTYVCTIDSNQNDGIAFNINNTEHYELPILGVHNMRN 288

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+   ++  +++ + +   R E   T  +   I   Y  +  S++  + 
Sbjct: 289 AAIAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASID 348

Query: 375 NIRTITSGRIIVVFGC--GGDRDQGKRPIMGK 404
            +  +   +I+++  C   GD  Q     +G+
Sbjct: 349 TLSNMEGRKILILADCLELGDNSQHMHEEIGE 380


>gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 452

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G   A V   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
 gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
          Length = 466

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 147/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V          
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERP------- 83

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             I +    LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G  H      +  + Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     +     AK  ++  +LP +  AII   D ++ E+ + A
Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYHHILP-QGVAIIPQQDDFTAEIREAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +++S G  G     +      +      + +G  F  L P  GE  V NA  A  
Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+G+    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350


>gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
 gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
          Length = 445

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGCLKQGDED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|71898206|ref|ZP_00680380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
          Length = 468

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 17/245 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V       D       
Sbjct: 23  RVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD------- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I + +   S  + 
Sbjct: 76  -VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTV- 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                SS  ++N +  P  +  A       +       + A   G   +  D +      
Sbjct: 134 --VYASSGNRNNEIGLPLAVIAAP-----DNADFAVYEMGAGKSGDIGYLTDIVTPDVAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H++   +       K  ++  L P  + A+I  DDA++    ++   A C VL
Sbjct: 187 VNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVPASCAVL 245

Query: 269 SVGYQ 273
             G Q
Sbjct: 246 RFGLQ 250


>gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
 gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
          Length = 461

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 165/369 (44%), Gaps = 37/369 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85
           KI  +S+DSR ++   +F+ + G K DG  F+  A+ +GA+A++ +   +   L+DF   
Sbjct: 25  KIIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAMTKGAKAVLTARLDNIEYLKDFPFN 84

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 I+ V++T + L   A     K     +AVTG++GK++    + QI  +     +
Sbjct: 85  ------IIYVNDTLEALHKIAYYYRKKFNIPFVAVTGSTGKTTTKDMIAQILSK----KY 134

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++  T    +F  +N +  P  I+     +  ++  +  V +  S  G  +   + +K  
Sbjct: 135 KVLKTE--GNF--NNEIGLPLTIF-----NLENTHQIAVVEMGMSGFGEIRRLKNIVKPQ 185

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTN+G  HI+   +++    AK  L E+   +E+  ++ ADD     ++K       
Sbjct: 186 VAVFTNIGVAHIEKLGSRENILKAKTELIED-FKEENVIVLNADDDM---LLKILQQYSS 241

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +    G +   I   K C I   +   + T+  +  + +    +PG   VYN+L A  + 
Sbjct: 242 KYYRYGIKSGEI---KACDIEKGEKGIEYTLKYKNLEKEIKLSIPGIHNVYNSLAAICVG 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT 380
           +  G+D   + E L+     PG+   +    +G    +D A+ +N  S++  L  +R   
Sbjct: 299 LEFGVDVDDMAEALKDFQ--PGKMR-LNIIEKGDIKIIDDAYNANPDSMKAALNVLRDFP 355

Query: 381 SGRIIVVFG 389
             R I V G
Sbjct: 356 GKRKIAVLG 364


>gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
 gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
          Length = 447

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 14/133 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  +S+D+R ++AG I+VA+ G   DGH ++  AI +GA A+VV  A  L D     
Sbjct: 22  DRVVTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTAIHKGAGAVVVQDA--LPDCP--- 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LV+ +TRK L + A  L  +    ++A+TG+ GK+S  + + +I +       Q
Sbjct: 77  ---VPQLVLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKTSTRAMLTEIFK------LQ 127

Query: 147 IGPTSTISSFAQD 159
            G  +T  +F  D
Sbjct: 128 PGLLATEGNFNND 140


>gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli CFT073]
 gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli CFT073]
 gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ABU 83972]
 gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 153-1]
          Length = 452

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGCHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 467

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 155/366 (42%), Gaps = 33/366 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R +Q G +FVA+   + DGH F   A+ +GA A++VS+  +          + P 
Sbjct: 29  VSIDTRTLQPGDLFVALTAQR-DGHDFAQAALDKGAAAVLVSNPEAC---------SGPR 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV+N    L         +     + VTG+ GK+SV   +  +  ++G + +       
Sbjct: 79  LVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGKTSVKEALAAVFIKAGPAHW------- 131

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            S  + +N    P  + LA+ +   +   V  + +       +  R+  ++      T +
Sbjct: 132 -SEKSYNNHWGVP--LTLAR-MPEATRHAVFEMGMNHKGEISELTRM--VRPHVAMITKI 185

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VLSVG 271
              H++   + +A  +AK  +FE L   +  A+I ADD ++  +M+    +G   +L  G
Sbjct: 186 APAHLENLGSMEAIADAKAEIFEGL-EADGVAVIPADDEFAPRLMQAVQGSGAGFMLDFG 244

Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G  + +       +     + V GK  DF   LPG  Q  NA       +  G+D  
Sbjct: 245 LTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGVVAAALGAGVDPD 304

Query: 331 LVLEHLEKLHVVPGR-FEFVGTNSRGGRI-YVDYAHTSNSLEM-----ILKNIRTITSGR 383
           L L+ L +L    GR   F    SRG  I  VD ++ +N   M     +LK  +     R
Sbjct: 305 LALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFGVLKLRKPSGQDR 364

Query: 384 IIVVFG 389
            I V G
Sbjct: 365 KIAVIG 370


>gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 452

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G   A V   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
 gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
          Length = 460

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 147/346 (42%), Gaps = 28/346 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W    ++ VS+D+R IQAG ++V ++G   +GH F+ +A  +GA A++ + A       
Sbjct: 21  EWGNIAVSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKGAAAVLWAEA------E 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            T   + P +VVD+T   L   A+R   +    ++ VTG++GK++    +  +      S
Sbjct: 75  GTPPESVPAIVVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKDMIAALLS----S 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ-HRLDG 201
            +++  T        +N +  P        L+ L+ +  T ++ VE    G  +  +L  
Sbjct: 131 QYRVQKTEG----NLNNHIGVP--------LTLLALEEGTDIAVVEMGMSGFGEIEQLTT 178

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           I +  A   TN+G  H+    +++    AK+ +    L  +   + + D+    E++  +
Sbjct: 179 IARPNAAVITNIGEAHLQELGSREGIAKAKLEILSG-LQGDGLFVYHGDEPLLAELVP-S 236

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                 V++ G      +      I       +  E        P+ G+  VYNAL A  
Sbjct: 237 LPLPQHVVTFGEGEDNDYYPTTVRIEAAGTSFVINELPRQTLFIPVLGKHHVYNALAAIA 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           +    G+    +   L +L V   R E V T  RG  +  D  + S
Sbjct: 297 VARFFGVSWENIAAALSRLQVTRMRTEVVKTK-RGFTVINDAYNAS 341


>gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T]
 gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2002017]
 gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2747-71]
 gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-671]
 gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2930-71]
 gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-304]
          Length = 452

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPALVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGMEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 477

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 156/389 (40%), Gaps = 34/389 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++I  ++  P       I  +S DSR I  G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DMIAAMAGRPFGTLPEGITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMAMANGASLLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VV++    L         +    I+AVTG+ GK++    
Sbjct: 69  VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++ +   SG         ++++SF  +N      P+ LA+ +   +  GV  V +  +  
Sbjct: 125 LRHVLSPSGKVH------ASVASF--NNHWGV--PLTLAR-MPDDTDYGVFEVGM--NHP 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +  ++ I+      T +   H+   +  +    AK  +FE L P     ++  D+  
Sbjct: 172 GEIRPLVEMIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPG-GHVVLNRDNDQ 230

Query: 253 SKEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + + A + G   + S G   K    L +         + +++ G+  +     PG  
Sbjct: 231 FNFLDRTAQSLGIEHIHSFGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRH 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYVDYAHT 365
              NAL A G+   +G D    +  L  L    GR    G   R     G    +D ++ 
Sbjct: 291 IAENALAALGVVRIVGADMEKAIAALATLKPEKGR----GKRHRLSIGSGSFTLIDESYN 346

Query: 366 SNSLEM-----ILKNIRTITSGRIIVVFG 389
           +N   M     +L      + GR I V G
Sbjct: 347 ANPASMRAAIALLAASEPTSRGRRIAVLG 375


>gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 EDL933]
 gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. EC1212]
 gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1125]
 gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1044]
          Length = 452

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 140/333 (42%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G          +N +  P  +     L          + + A+  G     +   
Sbjct: 128 TLYTAGNL--------NNDIGVPMTL-----LRLTPEYDYAVIELGANHQGEIVWTVSLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
           +  A    NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
 gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
          Length = 451

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 138/324 (42%), Gaps = 40/324 (12%)

Query: 11  FPELINQLSIFPMQWRERKINEVS----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +L+  L   P+   E  + +VS    +DSR ++ G +FVA+ G+K DGH F+P AIA+
Sbjct: 7   LSQLVEVLLASPINLSETALTQVSCGIQTDSRTLKLGEVFVALRGDKFDGHKFVPTAIAK 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +V   Y    F        P+L V +T K           +    ++ VTG+ GK
Sbjct: 67  GAIAAIVDFEYENPGF--------PVLRVKDTLKAYQQIGRWWRDRFNIPVIGVTGSVGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +    G    Q+    T  ++  +N +  P      K L  L ++   +  
Sbjct: 119 TTTKELIAAVLGTKG----QV--HKTYGNY--NNEIGVP------KTLLELGAEN-DYAV 163

Query: 187 VEASSHGLDQ-HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +E +  G  Q   L  I +   G  TN+G  HI+   +++A   AK  L  E +  +S A
Sbjct: 164 IEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLGSEEAIAEAKCELLAE-MAADSVA 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II  D+        +  +    VL+ G+ G  I  +    + N Q     +E        
Sbjct: 223 IINHDNPLLMATAAKVWHG--EVLTYGFSGGDIQGQ---LLDNDQ-----MEVAGIQLPL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGID 328
           PLPG     N L A  +   +GID
Sbjct: 273 PLPGRHNATNFLAALAVAKVLGID 296


>gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
 gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
          Length = 448

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 160/407 (39%), Gaps = 88/407 (21%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R +  G +FVA+ G   DGH F+ QA  +GA A ++           TI  + P 
Sbjct: 24  VSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKGASAALLEQ---------TIEDSLPQ 74

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V + R  L   A+    +    ++AVTG++GK++V   +  +                
Sbjct: 75  VEVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKEMIASV---------------- 118

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLD-QHRLDGIKLIAGS- 208
                            L  A S L++QG  +  + V  +  GLD  HR   I++ A   
Sbjct: 119 -----------------LGGAGSVLATQGNLNNDIGVPLTLLGLDPSHRFAVIEMGANQP 161

Query: 209 ----------------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                            TN G  H+D     +    AK  +F+ + P    A++ ADD +
Sbjct: 162 SEIGYLSCLVRPQVALITNAGPAHLDGFGDLKGVARAKGEIFQGVNPG-GVAVLNADDPH 220

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305
                    +    +  +G+        +V A H    +    EG  F  + P       
Sbjct: 221 ----FSYWRDLAGELPVIGF--GLTQSAEVTAHH----LAAHSEGSRFTLVTPVGKTPVQ 270

Query: 306 --LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG   V NAL A+ + IA+G+D   +   L  L  +PGR +       GG   +D  
Sbjct: 271 LSLPGRHNVLNALAASAVAIALGLDRDQISAALAALPSIPGRLQI--RRGAGGMRLLDDT 328

Query: 364 HTSN--SLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
           + +N  SL+  L+ +      R +V+  F   G+       +MGK A
Sbjct: 329 YNANPASLKAALELLAEFPGERFLVLGDFAELGEEAAPLHRMMGKQA 375


>gi|307294495|ref|ZP_07574337.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
 gi|306878969|gb|EFN10187.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
          Length = 473

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 34/283 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AV GT GK++  S V  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVIN-GGIINSYGSNARLGNSEWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   +    TN+  +H+D++ +     +A +  F
Sbjct: 162 ------------VEADESDGSFLRLDGTLAV---VTNIDPEHLDHYGSFDKVKDAFVE-F 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
            E +P    A++  D    + ++ R  +   R+++ G+  +  I  + V  I    +  +
Sbjct: 206 VENVPFYGAAMLCLDHPEVQAILPRVQDR--RIVTYGFSAQADIRGENVQPIPGGNRFDV 263

Query: 294 SVEGKDFDFL------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  +D           P+PG   V NA+ A G+ + +GID A V     K   V  RF 
Sbjct: 264 QIRERDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATVQTGFAKFGGVKRRFT 323

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            VG  + GG    +  DY H    ++ +L   R    GR+I V
Sbjct: 324 KVGEIAVGGGTATVIDDYGHHPVEIKAVLAAAREGAKGRVIAV 366


>gi|304318121|ref|YP_003853266.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302779623|gb|ADL70182.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 875

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 169/404 (41%), Gaps = 56/404 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I++VTGT+GK++    + QI +  G   + +G TST   +  D  +          A + 
Sbjct: 480 IISVTGTNGKTTTVRMISQILKMYG---YTVGMTSTDGIYVDDVCIYKGDNSGPKSARTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID  +T +     K  L 
Sbjct: 537 LADKNIDAAVLETARGGIVREGLGYDLADVGIITNISEDHLGIDGIETLEDLAFVK-SLV 595

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQ 290
            E + K+  +++ ADD  +  + KRA            +GK I    H   +    + ++
Sbjct: 596 VEAVKKDGYSVLNADDPMTPYISKRA------------KGKIIYFSMHENNITIKRHLEE 643

Query: 291 VTISVEGKDFDFLFPLPGE-------------------FQVYNALVAAGLCIAIGIDSAL 331
             ISV  K+ D +    GE                   + V NA+ A      I I   +
Sbjct: 644 GGISVYVKN-DTIVIANGEIVPVAKIDEIPATLNGKVLYNVENAMAAIAASYGIKIPVNV 702

Query: 332 VLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + ++  +      PGRF      S   R+ VDY H  +S+  ++++ R +   R++ V
Sbjct: 703 ISKGIKSFYCDENHNPGRFNIFNVGSF--RVLVDYGHNIDSIRKVIESARKLNPNRLLGV 760

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-PGFIEKGN- 444
            G  GDR       +G+I  +  D   + +D + R   P +I   +  G+  G + K + 
Sbjct: 761 IGVPGDRSDSSTLKIGEICGEGFDKVYIKEDLDLRGRKPGEIAKLLEIGVLKGGLSKEDV 820

Query: 445 -----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
                 ++A++TA+      D++V+  + +  V  V N   K+S
Sbjct: 821 NVILKEVDALKTAMYEAQPGDLIVIFYEKYAPVVDVINNFIKIS 864


>gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 452

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+DSR+I+A  +FVA++G + D H F+  A  QGA A++VS           + S+
Sbjct: 24  ISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVAEEQGAVALLVSH---------EVDSS 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P ++V +T K   L    ++ +     +A+TG+ GK++V   +  I +RSG
Sbjct: 75  LPQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCGKTTVKEMLASILKRSG 126


>gi|154249900|ref|YP_001410725.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153836|gb|ABS61068.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 451

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 44/275 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AVTGT GKS+  S +       G   +                      ++L    + L
Sbjct: 110 FAVTGTDGKSTTTSMLANSLIDLGADPY----------------------VFLGALHNKL 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLF 234
                 H   + + + LD+ +  G +L    F   TN+  DH++ +Q+ + Y+++    F
Sbjct: 148 EHGNYRHGKSDIAVYELDESQ-PGYELFRPEFLIITNIREDHVENYQSLEHYYSS----F 202

Query: 235 EELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           E L+      + +AD+  +   V    ++   +++    +G +            Q VTI
Sbjct: 203 ETLIKNSKFVVTFADEKKFKGNVTFGVYSGDFKLVERKQEGFY------------QTVTI 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352
                +  F  P+PG     NAL    L  +IG +   VL+  E   +   RF     N 
Sbjct: 251 FTPYGERKFFLPVPGYHNALNALAVISLLSSIGYNIDKVLDSFEDFRLPGRRFNVSYDNP 310

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           SR   I  DYAHT++ +E++LK  R +   R IV+
Sbjct: 311 SRKITIVDDYAHTADEIEVLLKTSREVYPERKIVL 345


>gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
          Length = 453

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 43/373 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           ++I  VS+D+R I+ G +F+A+ G   +G+ ++  A  +GA+ AIV      L +    +
Sbjct: 24  KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  ++ V NT + L   A     K    ++ +TG++GK+S    V  +       S++
Sbjct: 80  KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVL------SYK 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
                T  +F  +N +  P        L  L       V++ E    GL Q     IK +
Sbjct: 134 YKVFKTKGNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178

Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           A       G  TN+G  HI+  +T++    AKM +      K +  ++  +D +    + 
Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               A  +++  G    F I  K +       + T+    K+ +F   +PGE  + N ++
Sbjct: 234 ALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
              +   +G+    +   L+ +     R E +  +  G  I  D Y  +  +++  +  +
Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351

Query: 377 RTITSGRIIVVFG 389
           + I   R I V G
Sbjct: 352 KNIEGKRRIAVLG 364


>gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
 gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
          Length = 460

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 20/227 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +    I  VS+DSR IQ G +++ +VG   DG LFI +   + A A ++   Y +++   
Sbjct: 22  YDSHMIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKECEDKKAAAFLIDKDYKIKN--- 78

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               + P + VD+T K L   A     +     I+ +TG++GK++    + ++ ++    
Sbjct: 79  --NISIPYIRVDDTLKALQALAKAYRNELSSTKIIGITGSNGKTTTKDLLYEVLKK---- 132

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +     TI +   +N +  P  I     LS      V  V +   S G        +K
Sbjct: 133 --KFNVQKTIGNL--NNEIGVPKTI-----LSLREDCEVAIVEMGTDSFGDISLTTSIVK 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 TN+G  H++  +T++    AKM + E L P E   I   DD
Sbjct: 184 PDIALITNIGDSHLEKLKTKEGILKAKMEIVEGLNP-EGYFIYNGDD 229


>gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus torques L2-14]
          Length = 461

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 133/333 (39%), Gaps = 47/333 (14%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +R+++ V+ DSR +    +FVAI G + DGH FIPQ +  GA       + S QD   
Sbjct: 23  FLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFIPQVMEAGA-----LCSLSEQDLGD 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P + V +  + L   A          ++ +TG+ GK+S    +  +       S
Sbjct: 78  V---DYPYIRVSSCTEALKDLAEHYRRSLDIKVVGITGSVGKTSTKEMIASVL------S 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGI 202
            +     T  +F  +N +  P  ++  +    ++    G++H          D   L  I
Sbjct: 129 EKYNVLKTEGNF--NNEIGLPLTVFNIREEHEVAVLEMGISHFG--------DMKPLAKI 178

Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +      TN+G  H++   T+      K  + + + PK S  I   DD   K    R  
Sbjct: 179 ARPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPKGS-VIFNGDDDKLKSYTSRD- 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQV 312
                    G    +  L   C  H +      ++G   +F+ P         +PG+  +
Sbjct: 237 ---------GRTPVYFGLTSSCPFHVENIERKGLKGTYAEFVTPTSRFHAHISIPGDHMI 287

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           YNAL    +  A+G+D+  +   +EKL  + GR
Sbjct: 288 YNALAGVAVGYALGMDNEEIARGIEKLVPIAGR 320


>gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
 gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
          Length = 463

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 43/332 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++ + V+ DSR +Q   +FVAI G + DGH FIPQ + QG  AI   S   L D +    
Sbjct: 26  KEASSVAIDSRKVQKDTLFVAIKGARVDGHSFIPQVMDQG--AICSLSEQDLGDVT---- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P + V +  + L   A          ++ ++G+ GK+S    +  +       S + 
Sbjct: 80  --YPYIQVASCTEALKDLAEHYRRSLDIKVVGISGSVGKTSTKEMIASVL------SEKY 131

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
               T  +F  +N +  P  ++       L  +    V     SH  D   L  I +   
Sbjct: 132 CVLKTEGNF--NNEIGLPLTVF------NLRKEHEVAVLEMGISHFGDMEPLAKIARPDV 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  H++   T+      K  +F+ + P  +  +   DD       +R       
Sbjct: 184 CVITNIGYAHLENLGTRDGILKEKTSMFDFMNPDGTVILNGDDDKLRGYTSER------- 236

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALV 317
               G Q  +  L   C  H +Q   + ++G    F+ P         +PG+  + NAL 
Sbjct: 237 ----GIQPVYFGLDPACPFHAEQIQKMGLKGTVATFVTPSSSFSAHVSIPGDHMISNALA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +  A+G+    ++  +EKL  + GR   +
Sbjct: 293 GVAVGYALGMKDEEIIRGIEKLVPIAGRNNLI 324


>gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 158/380 (41%), Gaps = 36/380 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N+V +DSR ++ G +FVA+ G + D H F+     QGA A+VV                
Sbjct: 38  LNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVADQGAAAVVVERVPPGLAL------- 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF-QIG 148
            P +VV +TR  L   A     +    ++ VTG++GK++V   +  I      ++F + G
Sbjct: 91  -PAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNGKTTVKEMIATILA----AAFGEEG 145

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T  +F  +N +  P  ++  +A   + +   G+ H    A    +    L       
Sbjct: 146 YLGTRGNF--NNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAVLSRIAAPTL------- 196

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N  R+H ++  T +A       +    LP +  A+  ADD ++   + R      R
Sbjct: 197 GLVNNAQREHQEFMATVEAVARENGAVIRH-LPADGVAVFPADDDFTP--LWREEAGARR 253

Query: 267 VLSVGY--QGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           VLS G   Q       +  A  +  QV +   +V    F       GE  V NAL AA  
Sbjct: 254 VLSFGLSAQADVSASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGEHNVRNALAAAAC 313

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379
            +  GI    V+  LE    V GR +     +R G + +D  + +N  S+   +  +  I
Sbjct: 314 ALGAGIAIEAVVRGLESFAPVNGRLQR--KEARSGALVIDDTYNANPDSVRAAIDVLAAI 371

Query: 380 TSGRIIVVFGCGGDRDQGKR 399
              R++V+   G   DQG +
Sbjct: 372 AGPRVLVLGDMGEVGDQGPQ 391


>gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
 gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
          Length = 477

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 152/368 (41%), Gaps = 26/368 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++AG  F AI G++ DGH +   A+A GA  +VV+         A  R  
Sbjct: 26  ITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFAVANGAGLLVVAEG----KLPALGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++    L   A     +    I+AVTG+ GK++    ++Q    SG        
Sbjct: 82  VPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKTTTKEMLRQALAPSGRVH----- 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + ++SF  +N    P  + LA+ +   +  GV  + +  S  G  +  +  ++      
Sbjct: 137 -AAVASF--NNHWGVP--LTLAR-MPADTEFGVFEIGMNHS--GEIRPLVKMVRPHVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268
           T +   H+   +  +   +AK  +FE L       I+  D+A  +++ + A + G   +L
Sbjct: 189 TTIAPAHLGNFKNIEEIASAKAEIFEGL-EDGGFVILNRDNAQFEQLEEAAQDQGIEHIL 247

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G   K    L    +      +   + G+  +    +PG     NA+   G     G 
Sbjct: 248 TFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIPGRHIADNAMAVLGAVAVTGA 307

Query: 328 DSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----ILKNIRTITS 381
           +     E L  L  V GR +    T   G  + +D ++ +N   M     +L    T   
Sbjct: 308 NLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASMRAAIAVLAETETQGY 367

Query: 382 GRIIVVFG 389
           GR + V G
Sbjct: 368 GRRVAVLG 375


>gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
          Length = 452

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R +  G +FVA+ G + D H F   A   GA A++VS A         + ++
Sbjct: 24  LDAVTTDTRKVTPGCLFVALKGERFDAHDFADTAKDNGAGALLVSRA---------LDTD 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P LVV +TR      A+ +  + P  I+A+TG+SGK+SV      I  R G + +  G
Sbjct: 75  LPQLVVKDTRLAFGELAAWVRAQVPARIVALTGSSGKTSVKEMTAAILSRCGKTLYTAG 133


>gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
 gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
          Length = 445

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 139/316 (43%), Gaps = 55/316 (17%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P Q        VS+D+R +Q G +FVA+VG K DGH ++ QA   GA A++ S       
Sbjct: 17  PQQISPEPATGVSTDTRDLQPGNVFVALVGEKFDGHDYVDQAHQAGAIALITSRP----- 71

Query: 82  FSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
               + ++ P  +V++T R +  L A   + +   NI  + +TG+ GK+S    +     
Sbjct: 72  ----LETDLPQWIVNDTLRAYQDLGA---WWRQQVNIPVIGITGSVGKTSTKELI----- 119

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-H 197
            +G+   Q     T ++F  +N +  P      K L  L+      V +E +  G  +  
Sbjct: 120 -AGILGTQGKVLKTEANF--NNEIGVP------KTLLNLTPDHDFAV-IEMAMRGPGEIA 169

Query: 198 RLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           RL  I +   G  TN+G  HI    +++A   AK  L  E +PK+S A++ AD+     +
Sbjct: 170 RLAEIAQPTIGIITNVGTAHIGRLGSREAIAKAKCELL-EFMPKDSVAMLNADNEL---L 225

Query: 257 MKRAHNAGC-RVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           M  A        LS G+      G++I            QV ++    D  F  PL G+ 
Sbjct: 226 MATAATVWSGETLSYGFSQGDLTGEYIA---------PDQVKVA----DQVFPVPLAGQH 272

Query: 311 QVYNALVAAGLCIAIG 326
              N L A G+   +G
Sbjct: 273 NALNYLAALGVMQVLG 288


>gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 417

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 166/389 (42%), Gaps = 60/389 (15%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V +D+R    G +F+A+ G+  D H +I QA   GA AIV +           + +  P
Sbjct: 25  DVCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQMGAVAIVANKP---------VNNQLP 75

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            LVVD+T+  L+  AS     H +NI    +A+TG++GK++  + +  I       + Q 
Sbjct: 76  TLVVDDTQIALNTIASW----HLKNIKPIVIAITGSNGKTTTKNMLANIL------NLQA 125

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  +   +N L  P  +     L+         + + A+  G   H    +     
Sbjct: 126 PTLKTQGNL--NNHLGVPMTL-----LTLEEQHQYAVIEMGANHLGEIAHLCSLVNPNIA 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN     +D H  +   F+  ++   E+    S  I+   D ++ +V   +   G  +
Sbjct: 179 IVTNT----LDAHIGEFGGFDNLVKAKGEIYSNNSHNIVNTQDTFTGDV---SFGKGGDI 231

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +  K ++ K    I+ KQ++++++          L G   + NAL A+    A+GI
Sbjct: 232 ----FASKLVNNKFDLNIY-KQKISVTLN---------LIGTHNIENALAASTCAYALGI 277

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  L+ + LE      GR E +  N++  RI  D Y    +S    LK ++   SG  IV
Sbjct: 278 DINLIKQGLEVTKAEHGRLEVI--NTKKFRIIDDTYNANPHSTTTALKALQDF-SGEKIV 334

Query: 387 VFGC----GGDRDQGKRPIMGKIALDLAD 411
           V G     G D ++    I G++A   AD
Sbjct: 335 VLGAMRELGNDSEELHLKI-GQLAKKSAD 362


>gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 453

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 43/373 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           ++I  VS+D+R I+ G +F+A+ G   +G+ ++  A  +GA+ AIV      L +    +
Sbjct: 24  KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  ++ V NT + L   A     K    ++ +TG++GK+S    V  +       S++
Sbjct: 80  KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVL------SYK 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
                T  +F  +N +  P        L  L       V++ E    GL Q     IK +
Sbjct: 134 YKVFKTKGNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178

Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           A       G  TN+G  HI+  +T++    AKM +      K +  ++  +D +    + 
Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               A  +++  G    F I  K +       + T+    K+ +F   +PGE  + N ++
Sbjct: 234 ALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
              +   +G+    +   L+ +     R E +  +  G  I  D Y  +  +++  +  +
Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351

Query: 377 RTITSGRIIVVFG 389
           + I   R I V G
Sbjct: 352 KNIEGKRRIAVLG 364


>gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter
           propionicus DSM 2379]
 gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter propionicus DSM 2379]
          Length = 469

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 155/379 (40%), Gaps = 51/379 (13%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R  +++ VS+DSR + AG +FV + G + DGH FIPQ  A+G  A++       Q F   
Sbjct: 19  RSARVSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAKGVAAVLAD-----QSFDGE 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           I     ++ V +T   L   A+    +    ++ +TG++GK++    +  I +       
Sbjct: 74  IPPGLTVVRVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTKEMLATILE------- 126

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           Q GP    ++   +N +  P  ++   A     S G   + +  S  G     +D +  +
Sbjct: 127 QTGP-GLKTAGNLNNLIGLPQMLFRLDA-----SHGWAVLEMGMSEPG----EIDRLAEV 176

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHN 262
           A   T +  +    H           R   EL   LP    AII ADD     +  +   
Sbjct: 177 AAPQTGIVLNACPAHLESMGSVEGVARAKGELLLRLPAGGCAIINADDPL---IAGQPSP 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLP----GEFQVY 313
            G R L+ G     +   ++         ++ + G+ F     + + P+     G   VY
Sbjct: 234 PGVRRLTFGLGDADVRATEIT--------SLGIGGQSFLLHLGEIVLPVVLWSYGRHAVY 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEM 371
           NAL AA     +GI + L+   LE+      RF+       GG + +D ++ +N  S+E 
Sbjct: 286 NALAAAAAAHGLGIAAELIQSGLERFRPYDKRFQL---EDVGGLVLIDDSYNANPASMEA 342

Query: 372 ILKNIRTIT-SGRIIVVFG 389
            L  +  +   GR  V  G
Sbjct: 343 ALTTLGELKGGGRAFVALG 361


>gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
 gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
          Length = 452

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 9/123 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  IN VS+D+R I+ G +FVA+VG + D H F   A+  GA A++VS A   Q     
Sbjct: 20  NDAAINAVSTDTRTIEPGALFVALVGERFDAHDFALNAVEAGATALLVSRALDTQ----- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               TP L+V +T+  L      ++       +A+TG+ GK++V   V  I    G   F
Sbjct: 75  ----TPQLLVKDTKAALGQLGKFVHQVCQTPTVAITGSCGKTTVKEMVASIMMNKGQVLF 130

Query: 146 QIG 148
             G
Sbjct: 131 TAG 133


>gi|167630129|ref|YP_001680628.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592869|gb|ABZ84617.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 461

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 10/220 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++Q+ +A   A  + F E L  +   ++ ADD   +E+ +R      RV++
Sbjct: 180 TNIEADHLDHYQSFEAIVEAFYQ-FTERLSGDGILLLCADDPLLQEMAQRV--TARRVVT 236

Query: 270 VGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G + K  +  +   C     Q      E +    +  +PGE  + NAL A      IGI
Sbjct: 237 YGMKAKADYRAVDLSCTGKGSQADIFRGEERLGRLMLSVPGEHNMSNALAAVACADLIGI 296

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A     L +   V  RF+ +G  ++G  +  DYAH    ++  L   R    GR++ V
Sbjct: 297 PFAAAAAALSRFGGVGRRFQRMG-EAKGVSVVDDYAHHPTEVKATLAAARQTQPGRLVAV 355

Query: 388 FGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP 425
           F     R    R +  +   A D AD+ ++++  P  E P
Sbjct: 356 FQP--HRYTRTRDLYREFGEAFDAADVVVLSEIYPAGEAP 393


>gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 452

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 41/330 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  I  V++D+R + AG +FVA+ G + D H F  QA   GA A++VS    +      
Sbjct: 20  QDLTIEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQAKDNGAGALLVSRKLDI------ 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              + P +VV +TR      A+ +  +    ++A+TG+SGK+SV      I  + G + +
Sbjct: 74  ---DLPQIVVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKTSVKEMTAAILSQCGNTLY 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G          +N +  P  +     L          + + A+  G     +   +  
Sbjct: 131 TAGNL--------NNDIGVPMTL-----LRLTHEHEYAVIELGANHQGEIAWTVSLTRPE 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEV 256
           A    NL   H++   +      AK  ++   LP +  AI+ AD+           S++ 
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPDDGIAIMNADNNDWLNWQSIIGSRKT 236

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            + + NA     +  +    IH+       +  + T++    D + L PLPG   + NAL
Sbjct: 237 WRFSPNAA----NSDFSATNIHVTS-----HGTEFTLTTPTGDIEVLLPLPGRHNIANAL 287

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            AA L +A+G   A +   L  L  VPGR 
Sbjct: 288 AAAALSMAVGASHAAIKAGLANLKAVPGRL 317


>gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
 gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 453

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 135/328 (41%), Gaps = 44/328 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV++D+R   AG +F+AI G + D H F+  A+  G   ++VS    ++         
Sbjct: 24  IAEVTTDTRKATAGNLFIAIKGERFDAHDFVADAVTAGCSGLLVSQRLPVE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VV +TR  L   A+ +  +    I+A+TG+SGK+SV      I ++ G + +  G 
Sbjct: 75  VSQVVVADTRIALGQLAAWVRQRSEARIVALTGSSGKTSVKEMTAAILRQCGETLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKLIAG 207
                    +N +  P  +   K           +  +E  ++  D+  +  D ++    
Sbjct: 135 L--------NNDIGVPLTLLRLKPQHQ-------YAVIELGANHQDEIAYTTDLVRPETA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NL   H++   +      AK  +F   LP    AII +D           H  G  V
Sbjct: 180 LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINSDSNDWPHWQSALH--GKTV 236

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGEFQVYNALVA 318
                  +F   ++  +      VT+S +G  F         D   PLPG   + NAL A
Sbjct: 237 W------RFSPDRQADSDFYASGVTLSAQGTHFTLHSPQGEVDVTLPLPGRHNIANALAA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           + L +++G   + V + L  L  VPGR 
Sbjct: 291 SALALSVGAPLSAVCQGLSTLKAVPGRL 318


>gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2]
          Length = 466

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 147/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V          
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERP------- 83

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             I +    LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G  H      +  L Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     +     AK  ++  +LP +  AI+   D ++ E+ + A
Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +++S G  G     +      +      + +G  F  L P  GE  V NA  A  
Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSVNFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+G+    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350


>gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
 gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
          Length = 441

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 152/376 (40%), Gaps = 66/376 (17%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++    +DSR ++ G +FVA+ G K DGH F+ +A  +GA  +VV            ++ 
Sbjct: 20  EVKRFVTDSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVER-------EVPVKE 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSG 141
               LVV+++ K L   A          ++ + G++GK++       + S V ++C+   
Sbjct: 73  GKFALVVEDSLKALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSAVGKVCKTPK 132

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRLD 200
             + QIG   ++++F +D           AK  ++ L+   + HV V             
Sbjct: 133 NYNSQIGVPLSVANFPEDCDFWVIEMGASAKGDVAKLTQLVIPHVRV------------- 179

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    T++G +H++              + E  + ++  A++ +  A+   V +  
Sbjct: 180 --------ITSIGEEHLETFGCLDDVILGNGEILEG-MREDHVAVLPSYVAHCYRVERAV 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNA 315
                  LS                   Q + ++VEG  F     +   P+P    V N 
Sbjct: 231 LFGEGTPLSA------------------QDLKLTVEGVRFVVKGKEIFLPVPSLALVENI 272

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L + G+  A+G+D   +L+ L     V GRF    T S  G   +D ++ +N L  + K 
Sbjct: 273 LCSLGVMEALGVDWTTLLDKLTTFRPVEGRFR---TLSVMGATIIDDSYNANPLS-VKKA 328

Query: 376 IRTIT--SGRIIVVFG 389
           I +++   G  I V G
Sbjct: 329 IESLSLMEGHRIAVLG 344


>gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
 gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
          Length = 465

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 167/376 (44%), Gaps = 41/376 (10%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  IN+V +DSR      +F+A+ G   DGH F+ +A  QGA+A++V         
Sbjct: 17  LQGSDIIINKVITDSRVDCRDALFIALKGENFDGHQFVEKAKLQGAKALLVEH------- 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              + SN P ++V +T K L L A  +  +    ++ +TG++GK++V   V  I ++ G 
Sbjct: 70  --LVESNLPQVIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKTTVKEMVASILRQKG- 126

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD 200
                   +T  +F  +N +  P  +   K     +    G  H+   A    L +  + 
Sbjct: 127 -----NLLATQGNF--NNHIGVPLTLLRLKETDQYAVIEMGANHIGEIAYCASLAKPDVS 179

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            I        N+   HI+   + +    AK  +++  L +E  A+I  D  ++ + +++ 
Sbjct: 180 VI-------NNVEAAHIEGFGSVEGVAKAKSEIYQA-LSEEGTAVINLDSNFADQWIEQF 231

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGEFQVYN 314
             AG + ++V        +   C   +   V  +++       +      P+PG   V N
Sbjct: 232 --AGLQKITVSRHKDANFVADNCQTQDNGNVIFTMQHTQDGNSQSISVQLPVPGMHNVSN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVD--YAHTSNSLEM 371
           ALVAA L  A G D  ++   LE +  V GR  +F   N   G + +D  Y  +  S++ 
Sbjct: 290 ALVAAALASAAGADMEIIKVGLETMVSVKGRLNQFKAAN---GALIIDDTYNASVASVKA 346

Query: 372 ILKNIRTITSGRIIVV 387
            +  + +++  +++V+
Sbjct: 347 AIDYLTSLSGTKVLVL 362


>gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 452

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G   A +   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLAAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
 gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
          Length = 458

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V T+S
Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329


>gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 460

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 25/231 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR ++ G IFVA  G + DGH F  +A+ QGAE +VV+           +     I
Sbjct: 28  VTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYVVVNHPVP------GVPEEKAI 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L  D+    + + A+     HP+ ++ VTG+ GK++           + LS F      T
Sbjct: 82  LCPDSYHAMMVMGANYRSQYHPK-MVGVTGSVGKTTTKQMTY-----AALSGF----GET 131

Query: 153 ISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIAGSFT 210
           I +   Q+N L  P      + L  L S     V     SH  +  RL    +   G  T
Sbjct: 132 IKTEGNQNNELGMP------RTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIIT 185

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +G  HI    +Q+    AK+ +    LP+ +P ++  DD + ++    AH
Sbjct: 186 CIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDPFLRKAALPAH 235


>gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
 gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
          Length = 452

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 9/123 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  I +VS+D+R I+ G +FVA+VG + D H F   A+  GA A++VS A         
Sbjct: 20  QDVAIEQVSTDTRTIEPGSLFVALVGERFDAHDFASNAVEAGASALLVSKA--------- 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  +TP L+VD+T+  L      ++       +A+TG+ GK++V   V  I    G   F
Sbjct: 71  LDCSTPQLLVDDTKLALGKIGQFVHQLCQTPTVAITGSCGKTTVKEMVASIMMNKGQVLF 130

Query: 146 QIG 148
             G
Sbjct: 131 TAG 133


>gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
 gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
          Length = 470

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 151/366 (41%), Gaps = 53/366 (14%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR    G +FVA+ G++ DGH F   A+  GA A++ S              + P L+V
Sbjct: 34  DSREAAPGSLFVALRGSRVDGHDFAEAAVRAGATAVLCSRPV-----------DAPHLLV 82

Query: 96  DN----TRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           D         L+  A  +  + P+ +I+ VTG+SGK++    + Q  QR       IGPT
Sbjct: 83  DGGDDAVVAALAKLARAVVAELPDADIIGVTGSSGKTTTKDLLAQTLQR-------IGPT 135

Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKLIAG 207
            +   SF  +N +  P  +  A        Q    +++E ++ G+    H         G
Sbjct: 136 VAPPGSF--NNEIGHPLTVLRAD-------QTTRFIALEVAARGVGHIAHLCQIAPPRIG 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGC 265
              N+G  H+    ++     AK  L E L    +   A++ ADD     V+  A     
Sbjct: 187 VVLNVGSAHMGEFGSRDTIAQAKGELVEALPAAAQGGVAVLNADD---DAVIGMASRTAA 243

Query: 266 RVLSVGY------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           RV+S G       + + I L +      + + T+++          L G  QV+NAL  A
Sbjct: 244 RVVSYGLAPDADVRAEGIALDE----RGRPRFTLAIGEDTAPVSLRLVGTHQVHNALAVA 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377
            +   +G     +   L +   V  R+    T    G   V+ A+ +N  S+   L+ + 
Sbjct: 300 AVLRELGEPVTAIAAALSEAGPV-SRWRMEVTERPDGVTIVNDAYNANPESMSAALRTLA 358

Query: 378 TITSGR 383
           T+ SGR
Sbjct: 359 TLASGR 364


>gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
 gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
          Length = 454

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V           T+  N
Sbjct: 24  IESVSTDTRAIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQK---------TLNVN 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P +VV +++  L   A+ ++       +A+TG+ GK++V   V  I Q  G   F  G
Sbjct: 75  VPQVVVADSKVALGQVAAWVHQACQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133


>gi|262364614|gb|ACY61171.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis D182038]
          Length = 127

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 48/84 (57%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S   
Sbjct: 19  ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLY 110
               P++ + N  + LS  A + Y
Sbjct: 79  IHGVPVIYLRNLNQHLSTLAGQFY 102


>gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1]
          Length = 456

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 163/411 (39%), Gaps = 65/411 (15%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78
           Q+    +     DSR I++G +FV + G + DGH FIP A AQGA A      V   AY 
Sbjct: 20  QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSEHPVAEGAY- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                         ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 78  --------------ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            S       G  + +IG   T+    +D                 +   G  H+      
Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD 
Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD- 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +++     A C+++  G     I L ++    N      +   +  D   P+ G++
Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRLEERKNSLSFECNFLEQRIDL--PVTGKY 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA++AA   +  G+    + +   +L +   R E+    + G  I  D Y     ++
Sbjct: 274 NATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAM 332

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +IL+   TI +   GR + V     +     + + G +   L +  IVTD
Sbjct: 333 RLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382


>gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
 gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
          Length = 468

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 142/346 (41%), Gaps = 30/346 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+ I  + +DSR  +AG  F+A+ G + D H F+ Q + +G +  +V     L       
Sbjct: 34  EQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDKGCQVAIVERPLDLDMMQ--- 90

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 LVV +TR+ L    +    ++P+  ++A+TG+SGK++    +  I  R      
Sbjct: 91  ------LVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSR------ 138

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            + PT  ++    +N L  P  +     L   +      + + AS  G   +    ++  
Sbjct: 139 -LAPT-LVTRGNLNNDLGVPMML-----LELTAEHQYAVMELGASHQGEIDYTSQLVQPQ 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     ++    AK  ++   + K+  ++I A D ++  +         
Sbjct: 192 VAGIINVGTAHLGEFGGREGICRAKSEIYAH-IAKDGTSVIPAADDFTDAIRHAVQT--T 248

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           RVLS G +G  I+  ++  +    Q  +       +   P  G   V NA  A    +AI
Sbjct: 249 RVLSFG-EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALAI 307

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           GI    ++  LE      GR  F+   S    +++D  + +N   M
Sbjct: 308 GISLDDIVIGLELAQGAKGRLNFI---SHKQHLFIDDTYNANPTSM 350


>gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 459

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 43/321 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           + ++  V+ DSR +  G +FVA+ G +  DGH F P A+  GA A++ +           
Sbjct: 23  QTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPSAVRAGAVAVLAARPL-------- 74

Query: 86  IRSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              + P ++VD+    L  +A + +      +++A+TG+SGK+S    + Q+ QR+G + 
Sbjct: 75  ---DVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSGKTSTKDLIAQVLQRAGATV 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G      SF  +N +  P     A A +        H+ VE  + G  Q  +  +  
Sbjct: 132 FTQG------SF--NNEIGLPITALEATADTR-------HLVVEMGARG--QGHIAYLTQ 174

Query: 205 IA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVM 257
           I     G+  N+G  H       +    AK  L E  LP E+    A++ ADDA    + 
Sbjct: 175 ITPPRIGAVLNVGTAHAGEFGGPEMTAKAKGELVEA-LPSEAEGGVAVLNADDARVAAMS 233

Query: 258 KRAHNAGCRVLSVGYQ-GKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            R      RV++ G +    ++   V      +   T+     D      + GE QV NA
Sbjct: 234 ARTK---ARVVTFGVERSADVYATDVTLDGQGRASFTLHTPTGDAPVRLQVVGEHQVPNA 290

Query: 316 LVAAGLCIAIGIDSALVLEHL 336
           L AA +  A G+D+A + + L
Sbjct: 291 LAAAAVAEAAGMDAAQIGKAL 311


>gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 458

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 138/323 (42%), Gaps = 25/323 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R ++ G ++V I G + DGH F+ +AI  GA A +      +Q+  A    N P+
Sbjct: 30  VSIDTRKMEKGNVYVPIQGERFDGHSFVEKAIESGAVATLWKR--DVQNPPA----NMPV 83

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V++T + L + A     +    ++ VTG++GK+S    V  +      + F++  T  
Sbjct: 84  IFVEDTLEALQMLAKNYRDQLNVKVVGVTGSNGKTSTKDIVTSLLA----TKFKVQKTE- 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  +N +  P  I     L+      +  + +  SS G  +      +  A   TN+
Sbjct: 139 -GNF--NNHIGLPLTI-----LNLEEDTEIAVLEMGMSSRGEIEFLSKLARPNAAIITNI 190

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    ++ A   AK+ +   L  +E    +Y  D     +  R       V ++ +
Sbjct: 191 GEAHLMDLGSRDAIAEAKLEIVTGL--QEGGVFVYNGD--EPLLTNRVPKMDLAVETITF 246

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSA 330
                +     ++  +   T     +D + LF LP  G+  VYNAL +  +    G+   
Sbjct: 247 GDARANDYYPTSVTLQATGTHFTMNRDENVLFYLPVLGKHNVYNALASMAIAKYFGVTWE 306

Query: 331 LVLEHLEKLHVVPGRFEFVGTNS 353
            + + L  L +   R E V TNS
Sbjct: 307 EMKQGLVTLQMTGMRMEVVKTNS 329


>gi|294012777|ref|YP_003546237.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
 gi|292676107|dbj|BAI97625.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
          Length = 473

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 34/283 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AV GT GK++  S V  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVIN-GGIINSYGSNARLGNSEWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   +    TN+  +H+D++ +     +A +  F
Sbjct: 162 ------------VEADESDGSFLRLDGTLAV---VTNIDPEHLDHYGSFDKVKDAFVE-F 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
            E +P    A++  D    + ++ R  +   R+++ G+  +  I  + V  I    +  +
Sbjct: 206 VENVPFYGAAMLCLDHPEVQAILPRVQDR--RIVTYGFSAQADIRGENVQPIPGGNRFDV 263

Query: 294 SVEGKDFDFL------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  +D           P+PG   V NA+ A G+ + +GID A +     K   V  RF 
Sbjct: 264 QIRERDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATIQTGFAKFGGVKRRFT 323

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            VG  + GG    +  DY H    ++ +L   R    GR+I V
Sbjct: 324 KVGEIAVGGGSATVIDDYGHHPVEIKAVLAAAREGAKGRVIAV 366


>gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
 gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
          Length = 458

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 146/354 (41%), Gaps = 33/354 (9%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N LS F    ++  I  VS DSR I+ G +F+   G K DGH F+  AI  GA      +
Sbjct: 17  NDLSAF----QDVAIGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGAIKSGA------A 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A   +          PI++V+N+ + L   A+    +    ++ +TG++GK++    V  
Sbjct: 67  ASLWEKDVPNPPEGLPIIIVENSLQALQNLATAYRHELGIKVVGITGSNGKTTTKDMV-- 124

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGL 194
               + L S +     T  +F            ++   L+ L+ +  T V+V E    G 
Sbjct: 125 ----ANLLSLKYKVQKTQGNFNS----------HIGLPLTILALEKGTEVAVLEMGMSGF 170

Query: 195 DQ-HRLDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +  +L  I L  A   TN+G  H+    +++    AKM +    L ++   + Y ++  
Sbjct: 171 GEIEQLSNIALPDAAIITNIGESHLQDLGSREGIATAKMEIISG-LKEDGLFVYYGEEPL 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            KE + +           G +     L  V    +     ++ E  D + + P+ GE  V
Sbjct: 230 LKERIDKDWKFKVETFGKGTENTLYPL-DVKTTDSGSVFKVNAE-PDTEVMLPVLGEHNV 287

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            NAL +  +     ++   + E  ++L +   R E +    RG +I  D  + S
Sbjct: 288 MNALASMLVAKEFDVEYKEMPEAFQQLKLTQMRMEMM-EGKRGEKILNDAYNAS 340


>gi|318060323|ref|ZP_07979046.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actG]
 gi|318077690|ref|ZP_07985022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actF]
 gi|333023747|ref|ZP_08451811.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
 gi|332743599|gb|EGJ74040.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
          Length = 470

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 18/226 (7%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHN-AGCRVLSVG 271
           H +Y   ++ Y +     FE  + K  P    +I AD   ++E+ +R  + A  RVL+ G
Sbjct: 191 HANYASIEEIYES-----FETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYG 245

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   + + KV       +VT+S+ GK   F   +PG    +NA+ A    +++G+   
Sbjct: 246 SAEDADVRVHKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLH 305

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L     V  R +  G  + G ++   YAH    +   L+ +R    GRI+VVF  
Sbjct: 306 NLASALRSYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQP 364

Query: 391 ---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432
                 ++ GK   MG+ AL LAD ++V D  P  EDP E + +E+
Sbjct: 365 HLFSRTQELGKE--MGQ-ALALADSSLVLDIYPAREDPIEGVTSEL 407


>gi|144897242|emb|CAM74106.1| hypothetical protein MGR_2077 [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 112

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR +  G +F A+ G+K DG  FIPQA+AQGA  IV  +    +  +A     
Sbjct: 18  ITAITCDSRKVGPGTLFFALSGSKADGRAFIPQAVAQGAVVIVAETGTQAETGTAL---- 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             ++ VDN R+  +L A+ L+G+ PE + A+
Sbjct: 74  --LVTVDNPRRAYALAAAPLHGRQPEVMAAI 102


>gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) [imported] - Buchnera sp. (strain APS)
 gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 455

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           INE+  D++ I  G +F+A++G K D H+FI  A+ +   A V             I+ +
Sbjct: 24  INEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQK---------NIKPH 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P ++V+NT   L   A  +  K    ILA+TG+ GK+SV      I +++G
Sbjct: 75  VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNG 126


>gi|295840062|ref|ZP_06826995.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295827778|gb|EDY43980.2| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 18/226 (7%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHN-AGCRVLSVG 271
           H +Y   ++ Y +     FE  + K  P    +I AD   ++E+ +R  + A  RVL+ G
Sbjct: 191 HANYASIEEIYES-----FETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYG 245

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   + + KV       +VT+S+ GK   F   +PG    +NA+ A    +++G+   
Sbjct: 246 SAEDADVRVHKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLH 305

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L     V  R +  G  + G ++   YAH    +   L+ +R    GRI+VVF  
Sbjct: 306 NLASALRSYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQP 364

Query: 391 ---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432
                 ++ GK   MG+ AL LAD ++V D  P  EDP E + +E+
Sbjct: 365 HLFSRTQELGKE--MGQ-ALALADSSLVLDIYPAREDPIEGVTSEL 407


>gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 458

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           INE+  D++ I  G +F+A++G K D H+FI  A+ +   A V             I+ +
Sbjct: 24  INEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQK---------NIKPH 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P ++V+NT   L   A  +  K    ILA+TG+ GK+SV      I +++G
Sbjct: 75  VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNG 126


>gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
 gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
          Length = 454

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 124/307 (40%), Gaps = 45/307 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +IN + +D+R + +G +F+A+ G   DGH FIPQA+  GA A+V      ++    T+  
Sbjct: 29  RINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDR--PVEGLGETVAQ 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                +V++T       A+    +    I+ VTG+ GK++    +  +  + G       
Sbjct: 87  ----FLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFG------- 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIA 206
                       R    + I + K L  LS      + VE +  G  Q  L  D  K   
Sbjct: 136 -------NVHKTRANYNNEIGVPKTLLELSPDHDFAI-VEMAMRGRGQIALLADIAKPTI 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  HI    ++ A   AK  L     P ES AI+  D+A   E  +R      +
Sbjct: 188 GLITNVGTAHIGLLGSELAIAEAKCELLAH-QPPESTAILNRDNALLMETAQRFWQG--K 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAGL 321
            ++ G +G  +H               +V+G++          PL G     N L A  +
Sbjct: 245 TITYGLEGGDVH--------------GTVDGENLILDGVSLPLPLAGVHNASNYLAAIAV 290

Query: 322 CIAIGID 328
              +G+D
Sbjct: 291 AQCLGLD 297


>gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 458

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           INE+  D++ I  G +F+A++G K D H+FI  A+ +   A V             I+ +
Sbjct: 24  INEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQK---------NIKPH 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P ++V+NT   L   A  +  K    ILA+TG+ GK+SV      I +++G
Sbjct: 75  VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNG 126


>gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
 gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
          Length = 452

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 133/333 (39%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA            F         H   + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA--------NSDFTATNIYVTSHGT-EFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii SDF]
 gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii]
          Length = 466

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V          
Sbjct: 31  QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERP------- 83

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             I +    LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G  H      +  + Q  + 
Sbjct: 139 ----LAPT-LINRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     +     AK  ++  +LP +  AI+   D ++ E+ + A
Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +++S G  G     +      +      + +G  F  L P  GE  V NA  A  
Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+G+    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350


>gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
 gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
          Length = 454

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R I  G +FVA+VG + D H F  QA+  GA A++V     +         N
Sbjct: 24  IDAVSTDTRAIDNGALFVALVGERFDAHNFCQQAVDAGAGALLVQKHLDV---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P +VV +T+  L   AS ++       +A+TG+ GK++V   V  I Q  G   F  G
Sbjct: 75  VPQVVVSDTKMALGELASWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133


>gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 471

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 42/237 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR    G +FVA VG + DGH +    +  GA A++ S    +           P 
Sbjct: 31  VVRDSREAVPGSLFVAFVGERADGHDYARAVVETGAVAVLGSRPVGV-----------PA 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG---- 148
           +VVD+ ++ L   A  +  +    ++A+TG++GK+S    + Q+ +    + F  G    
Sbjct: 80  IVVDDVQRALGALARHVVERLGATLVALTGSAGKTSTKDLIAQVLRTKAPTVFTPGSLNN 139

Query: 149 ----PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               P + +S+ A+   L              + ++G+ H+        L   R+     
Sbjct: 140 EIGLPLTALSATAETRFLVL-----------EMGARGIGHIRYLTE---LTPPRI----- 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259
             G   N+G  HI     ++    AK  L E L P E    A++ ADD Y K +  R
Sbjct: 181 --GLVLNVGSAHIGEFGGREQIAQAKGELVESLPPAEEGGVAVLNADDPYVKAMAAR 235


>gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 456

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 145/371 (39%), Gaps = 50/371 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  I   ++D+R ++   +F+ + G   +GH F+PQA  +G  A+       L D S 
Sbjct: 22  FEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAV-------LWDRS- 73

Query: 85  TIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137
               N P    +++VD+T + L   A     +    ++ VTG++GK++    +  +    
Sbjct: 74  --EPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKDMLHAVLGTQ 131

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSH 192
               + +G  +  IG   T+ +  +D  +        A+  + +LS       +V     
Sbjct: 132 YRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAV----- 186

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                            TN+G  H+    +++    AK+ +   L  +E   + Y    +
Sbjct: 187 ----------------ITNIGESHMQDLGSREGIAEAKLEIINGL--REDGVLFY----F 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             E + R     CR  + G +G    L+       ++    +++  D  F  P+ G   V
Sbjct: 225 GDEPLLREKAYTCRTTTYG-EGADNDLRLKEIKQGEEGTYFTIDSIDRSFFIPVLGRHNV 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ A    I  GI        L +L V   R E V T +    +   Y  +  S++  
Sbjct: 284 MNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAA 343

Query: 373 LKNIRTITSGR 383
           ++ I T+   R
Sbjct: 344 IELIETMKGYR 354


>gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 442

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 52/374 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q   + +  VS DSR +++G +FVA+V  + DGH ++ QA+ +GA A++V   +      
Sbjct: 17  QIDSKIVTGVSFDSRKVKSGDLFVALVA-ENDGHDYVQQALTKGATAVLVDDRHQ----- 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
             I S  P ++V +T   L+L     Y +H  N  ++A+TG++GK++           S 
Sbjct: 71  --IDSKIPAIIVSDT--LLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMA------SA 120

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLD 200
           +   Q     T  +F  +N +  P        L+ L+    T V V     G+D+  +L 
Sbjct: 121 IMGSQYKTFKTPENF--NNEIGVP--------LTLLTMPDDTEVLV--VELGMDRPGQLT 168

Query: 201 GIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            +  +        T +G  HI++ +T++    AK+ + + L  + +  + Y +   +   
Sbjct: 169 TLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLVPYDEPLLTNAQ 228

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K+       V + G   K I+      I   Q            F  PL G + + NAL
Sbjct: 229 VKQ------NVQTFGQDIKDINSSSSKTIFTYQNTR---------FAIPLLGRYNIMNAL 273

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A    I + I+     E L+   +   R E + T S G  +  D Y     ++  +L  
Sbjct: 274 AAISAGILLHIELKNAAEALQHFDLTKNRTEQL-TTSHGVNLISDVYNSNPTAVAAVLAT 332

Query: 376 IRTITSGRIIVVFG 389
           ++ I +    VV G
Sbjct: 333 LKIIPATHKYVVLG 346


>gi|308177858|ref|YP_003917264.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
 gi|307745321|emb|CBT76293.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
          Length = 465

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 142/328 (43%), Gaps = 34/328 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           E I+A+ GT GK++  S    + +  G   SF +G  + I S   +  L + S  ++A+A
Sbjct: 113 EKIVAIAGTHGKTTTTSLTAHMLKTIGTRPSFAVG--ANIPSLGTNAELGSGS-YFVAEA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                         + S      +R D I +     TN+  DH+D++ T  A   A +  
Sbjct: 170 --------------DESDASFLNYRPDVIIV-----TNVEADHLDHYGTADAVHQAFVD- 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           F +LLP++   I  ADD  +  + +  RA  +  RV + G+                 + 
Sbjct: 210 FAQLLPEDGLLICCADDEGANNLARKMRAARSDIRVQTYGFSDHADRRLSQAQATEDGRF 269

Query: 292 TISVE---GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           T ++E   G+       +PG+  + NA  A  + I  G++    L+ L        RFEF
Sbjct: 270 TATIEWGSGESRILDLAVPGQHNLLNAAAALAVGIDAGLEVQEALDALSSFSGAARRFEF 329

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG-GDRDQGKRPIMGKIA 406
            G  +   R+Y DYAH    ++  L   RT+  +GR+ VVF      R Q       + A
Sbjct: 330 KG-EAGAVRVYDDYAHHPTEVQAALTAGRTVAGNGRLHVVFQPHLFSRTQEFYRQFAQ-A 387

Query: 407 LDLADIAIVTDDNPRSEDP-EKIRAEII 433
           L LAD   V D  P  E+P E + +E+I
Sbjct: 388 LSLADSVAVLDIYPAREEPIEGVNSELI 415


>gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 469

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 144/355 (40%), Gaps = 42/355 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q    +I  + +DSR  +AG  F+A+ G + D H FI Q   QG +  +VS         
Sbjct: 31  QAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQGCQVAIVSQP------- 83

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
             I +    LVV +TR  L    +    ++P+  ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDAEVCQLVVPDTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
               I PT  ++    +N L  P  +     L          + + AS  G   +  + +
Sbjct: 139 ----IAPT-LVTRGNLNNDLGVPVML-----LELHPEHQYAVMELGASHQGEIDYTSNLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           + +     N+G  H+     +     AK  ++  + P  +  +  ADD ++  + +    
Sbjct: 189 QPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAPNGTSIVPAADD-FADSIRQAVQT 247

Query: 263 AGCRVLSVGYQGKF----IHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              +VLS G  G+     I L+   A    N  Q    V         P  GE  V NA 
Sbjct: 248 E--QVLSFGAGGEIFATEIELQAQSATFKLNTPQGVRQVN-------LPFAGEHNVQNAT 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            AA   +AIGI    ++  LE+     GR  F+    +G  + +D  + +N   M
Sbjct: 299 AAAAFALAIGISLDDIVLGLEQAVGAKGRLNFI---QQGRHLLIDDTYNANPTSM 350


>gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
 gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
          Length = 466

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V          
Sbjct: 31  QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERP------- 83

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             I +    LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G  H      +  + Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     +     AK  ++  +LP +  AI+   D ++ E+ + A
Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +++S G  G     +      +      + +G  F  L P  GE  V NA  A  
Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+G+    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFL---QKAPHLFIDDTYNANPTSM 350


>gi|255994795|ref|ZP_05427930.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
 gi|255993508|gb|EEU03597.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
          Length = 464

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 111/283 (39%), Gaps = 47/283 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKAL 174
           +A++GT GK++  S V  I     L++ +  PT  +     D   N     S  ++ +A 
Sbjct: 112 IAISGTHGKTTTTSMVSLI-----LNNAKKDPTILVGGNLSDINGNLKIGKSEYFVTEAC 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y+ S       VE                      N+  DH+DY    + +     R F
Sbjct: 167 EYMDSFLNLRPKVEL-------------------ILNIDSDHLDYFDDIE-HIAKSFRAF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLK-------KVCAI 285
            EL+PK+   I Y  + + K  +K   N      S G  Y  + I          K+C  
Sbjct: 207 AELVPKDGLVIGYDANPFVKAALKNVSNVVTFGFSRGSDYVAEDIEFDHQGLPSFKIC-- 264

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            N + V  +V+ K       +PGE  + NAL AA     +G+D + +   L +   +  R
Sbjct: 265 -NGENVVANVKLK-------IPGEHNIQNALAAAACTHTLGVDGSDIENTLNEFSGINRR 316

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           F+ VG      ++  DYAH    +E  L   + +   R+  +F
Sbjct: 317 FDIVGMIGGSVKLVDDYAHHPTEIEATLDAAKKMKHNRLWCLF 359


>gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 477

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 155/385 (40%), Gaps = 26/385 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++I  ++  P       I  +S DSR    G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DMIAAMAGRPFGTLPEGITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMAMANGASLLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VV++    L         +    I+AVTG+ GK++    
Sbjct: 69  VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++ +   SG         ++++SF  +N    P  + LA+ +   +  GV  V +  +  
Sbjct: 125 LRHVLAPSGKVH------ASVASF--NNHWGVP--LTLAR-MPEDTDYGVFEVGM--NHP 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +  +  I+      T +   H+   +  +    AK  +FE L P     ++  D+  
Sbjct: 172 GEVRPLVAMIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPG-GHVVLNRDNDQ 230

Query: 253 SKEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + + A + G   + S G   K    L +         + +++ G+  +     PG  
Sbjct: 231 FNFLDRTAQSLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRH 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSL 369
              NAL A G+   +G D    +E L  L    GR +    +  GG    +D ++ +N  
Sbjct: 291 IAENALAALGVVRIVGADMQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPA 350

Query: 370 EM-----ILKNIRTITSGRIIVVFG 389
            M     +L        GR I V G
Sbjct: 351 SMRAAIALLAASEPTGRGRRIAVLG 375


>gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
 gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
          Length = 473

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 133/309 (43%), Gaps = 28/309 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ ++ DSR ++ G  F+A+ G + DGH F   AIA GA  ++V+     Q  +    +
Sbjct: 26  RVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIAAGAALVIVTDDLPEQALAFAREA 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              I  V + ++ LS  AS    +   +++ VTG+ GK++      Q+       S +  
Sbjct: 86  GCCIARVPDAQQALSALASAWREELSAHVVGVTGSVGKTTTRGLAAQVL------SARFK 139

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAG 207
             ST  +F  +N L  P  +  A        +    + VE    G  Q  RL  +     
Sbjct: 140 TESTKGNF--NNELGLPLTVLTAP-------KDCEALVVEMGMDGRGQIARLAAVARPER 190

Query: 208 S-FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA--G 264
           +  TN+G  H++Y  T++    AK  + E L   E  A + AD  ++  +++ A  A  G
Sbjct: 191 AIITNVGTAHLEYLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIEHARLAERG 250

Query: 265 CRVLSVGYQGKFIHLKKVCAI------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            RV+  G +G   H   V A         +    +  +G+       L G   V NA  A
Sbjct: 251 IRVVRFGGEG---HASDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQNACGA 307

Query: 319 AGLCIAIGI 327
           A + ++ G+
Sbjct: 308 AAIGLSYGM 316


>gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
 gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
          Length = 450

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 152/374 (40%), Gaps = 54/374 (14%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I   S DSR +  G +++ I+G + DGH FI  A   GA A++  S   + D      
Sbjct: 21  QEITGFSQDSRKVSPGMMYIPIIGERFDGHDFIKNAFENGASAVI--SGRDIDD------ 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           S   I+ V +T K L   A  L       ++ +TG+ GK+S    V  + ++      Q 
Sbjct: 73  SEHIIIKVKDTLKALQDMAHYLRKHRKVKVVGITGSVGKTSTRDMVYSVIKQ------QY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               T  ++  +N +  P  I   K    +    G+ H+             ++ + +IA
Sbjct: 127 KTLKTEGNY--NNAIGLPLTILRLKDEQVMVLEMGMNHLK-----------EMEELSMIA 173

Query: 207 ----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                + TN+G  HI    +++    AKM +   +       I   +D  S   + R + 
Sbjct: 174 CPDISAITNVGTAHIGELGSRENILKAKMEIINGMSDNSMLVINNDNDMLSTVEVGRLN- 232

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVY 313
               ++ VG     +  K          V +S EG  F+F +         P+PG+  V 
Sbjct: 233 ----LIRVGIDNG-VDFK-------ANNVVLSDEGSTFNFEYKGKVYFVDVPVPGKHFVM 280

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL+A  + + + I     ++ +++  +   R + V   +    I   Y  + +S++  +
Sbjct: 281 NALIAIAIGLQLDISPEQCIKGVKEFELTRNRMDIVELKNNITLIDGTYNASEDSMKSSI 340

Query: 374 KNIRTITSGRIIVV 387
             + T T  +I V+
Sbjct: 341 DVLATYTRRKIAVL 354


>gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
          Length = 468

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 161/405 (39%), Gaps = 47/405 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK Q     D  E     SI    W E  I  +  ++DSR ++ G  FVAI GN EDGH 
Sbjct: 1   MKWQLWKVSDLAE-----SIGASWWGEDIILPDFFTADSREVRPGAAFVAIRGNAEDGHD 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +I  A+ QGA  I+       Q  S  IR    I V D+      + ++ L    P+ ++
Sbjct: 56  YIKDALHQGASLIIAEKGRIPQGLS--IRDRAVIEVNDSVVDLARMASAYLSACLPDEVI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG+ GK++    +++         F+  P      F  +    T     +  +L+ L+
Sbjct: 114 AITGSVGKTTTREVLKK--------CFEGMPL----VFGAEKSFNT----LIGCSLTILA 157

Query: 179 SQGVTHV---SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               T+V    +  +  G  +  +          T +   H++   T +    AKM +  
Sbjct: 158 MPAGTNVLILEMGTNKPGEIEEMVQYFPPTRCIITEVSSAHLEGLVTLEGVIAAKMEITR 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-----IHNKQQ 290
              P     I  AD+        + +   C+ + VG +   +   ++C      + N  +
Sbjct: 218 S--PHLKTLIFNADNENLANAAGQVYGT-CKKIGVGVRKGEV---RICQSTFDLVENLPR 271

Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  ++  +D    D    L G     + + A  L   +G      L +LE +  +PGR  
Sbjct: 272 LKTTIRWEDGVISDLYCGLWGTHNSLSLVYALTLYRELGYPLEEALRNLETMTSLPGRGR 331

Query: 348 FVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-TSGRIIVVFG 389
              T  R G + +D ++ +N  S++  L    T+   GR + + G
Sbjct: 332 VFST--RAGAVIIDDSYNANPSSMKASLNTFSTVEVKGRKLAILG 374


>gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 452

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPRGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G     +   L  L  VPGR   V  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLTTIKAGLATLKAVPGRLFPVQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Ames]
 gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Sterne]
 gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A1055]
 gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Vollum]
 gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Australia 94]
 gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus anthracis CI]
 gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Ames]
 gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V T+S
Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329


>gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
 gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
          Length = 431

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 148/340 (43%), Gaps = 28/340 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV++D+R + AG +FVA+ G + D H F   AIA GA A++VS           +  +
Sbjct: 2   ITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSK---------RLLVD 52

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +TR  L  FA+ +  + P N++A+TG+SGK+SV      I ++ G   +  G 
Sbjct: 53  VPQIVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLYTAG- 111

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    P+ L   L          + + A+  G   +  D  +  A   
Sbjct: 112 -----NFNNDIGV----PLTL---LRLTPEHDFAVIELGANHIGEIAYTTDLSRPEAALV 159

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVL 268
            NL   H++   +      AK  +F   LP    AII AD   +S      AH    R  
Sbjct: 160 NNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGIAIINADSHDWSHWQTTLAHKQVWRFS 218

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +G +    +   +         T+           PLPG   V NAL AA L I++G D
Sbjct: 219 PLGGEDIDFYATDLRIEQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGAD 278

Query: 329 SALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN 367
              V   L +L  VPGR F  V  +   G++ +D  + +N
Sbjct: 279 LDAVRVGLSQLKAVPGRLFPLVLAD---GKLLLDDTYNAN 315


>gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
 gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
          Length = 826

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 30/366 (8%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +E  I+ V +DSR +      +F A+   + DGH +IP+  A+G    VV     + D  
Sbjct: 20  KEANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIPELYARGVRNFVVEV---VPDNW 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            T+ S +  L V  + + L   A R   +    I+ +TG++GK+ V  ++ Q      L 
Sbjct: 77  ETLYSGSNFLKVVGSLEALQRLAERHRDEFLIPIVGITGSNGKTMVKEWLYQ------LL 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           S Q+  T +  S+  ++++  P  ++L   L+  +  GV    +  S  G      D I+
Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVWL---LNENTQVGVFEAGI--SKPGEMMALRDIIQ 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA--DDAYSKEVMKRAH 261
              G FT+LG  H +   + +A    K+ LF +     + AI+Y+  DD  +  + +  +
Sbjct: 184 PTIGVFTSLGTAHQENFPSIEAKCKEKLCLFHD-----TQAIVYSMDDDVLTHCLAQYNY 238

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAG 320
                  S  +     ++K +     +  VT + +G K+  +  P   +  V N++  A 
Sbjct: 239 QGEQLSWSTKHTDATFYIKSIEKKDIETTVTYTWKGGKEAQYKLPFIDDASVENSITCAV 298

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIR 377
           + + +G+  A + E + +L  V  R E V     G  +  D Y    NSL++ L   N R
Sbjct: 299 VALHLGVTQAALAERMAQLEPVAMRLE-VKEGQHGCTLINDSYNSDYNSLDIALDFMNRR 357

Query: 378 TITSGR 383
               GR
Sbjct: 358 PDHKGR 363


>gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
 gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
          Length = 825

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 164/406 (40%), Gaps = 37/406 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           E++  L     + ++ +I EVS DSR +      +F A+ G   DGH ++ +   QG   
Sbjct: 15  EILRILDCKACEVKDFEITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLYEQGVRN 74

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VV+   +         S     VVD     L   A+   G+    ++ +TG++GK+ V 
Sbjct: 75  FVVTGLRA----GFLPLSGANFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTIVK 130

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            ++ Q+            P    S  + ++++  P        LS L     T +++  +
Sbjct: 131 EWLYQLLSDE--------PGIYRSPRSYNSQVGVP--------LSLLGMDVSTRLAIIEA 174

Query: 191 SHGL--DQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---LLPKESPA 244
              L  +  +L   I+   G FT+LG  H +  +++Q     K  LF +   ++ +E  A
Sbjct: 175 GISLPGEMGKLQAMIRPEIGIFTHLGDAHGENFESRQQKLAEKAILFRDCRCIIGREGEA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + Y       +V K    +G        +   + +++  +  +++ V +  E   F    
Sbjct: 235 LDYIASRLRPDVKKMIWGSG--------KNATVRVEEKGSTAHERLVAVGYEHVAFTLSI 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P P E    N + A  + +  GI    + E + +L  +  R E     +R   I   Y  
Sbjct: 287 PFPDEASFENCMNAVCVLLLEGISPVFIAERVARLQPLAMRMEIKDGINRCVLINDYYNS 346

Query: 365 TSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDL 409
            + S ++ L  +    +GR  +V+     D   G+R +  ++AL L
Sbjct: 347 DAASFQLALNTLAMQDAGREKVVILSDFVDTGTGERELYREVALLL 392


>gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806]
          Length = 454

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 130/308 (42%), Gaps = 47/308 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +++DSR I++G  F+A+ G+  +GH FI  AIA+GA A++V      Q  S    SN
Sbjct: 30  VSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIARGAAALIVD-----QPVSVNYSSN 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+ +V NT K     A     +    ++A+TG+ GK++    +  +    G        
Sbjct: 85  IPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSVGKTTTKELIASVLATRGKVH----- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS--VEASSHGLDQHRLDGIKLIA- 206
             T++++  +N +  P      K L  L     TH S  +E    G  +     I L+A 
Sbjct: 140 -KTLANY--NNEIGVP------KTLLELDE---THDSAVIEMGMRGRGE-----IALLAQ 182

Query: 207 ------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+G  HI    ++ A   AK  L  E     S A++  D     E  KR 
Sbjct: 183 IAQPTIAVITNVGTAHIGRLGSESAIAEAKCELLSESP-SSSIAVLNYDHPLLTETAKRV 241

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  ++ G+ G  I  + +         T+ V G DF+   PL G     N + A  
Sbjct: 242 WQG--ETITYGFFGGDIVGELL------DLTTLRVNGLDFN--LPLSGRHHALNFMAALA 291

Query: 321 LCIAIGID 328
           +   +GID
Sbjct: 292 VAKILGID 299


>gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 477

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 150/372 (40%), Gaps = 34/372 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I  G  F AI G++ DGH +   A+A GA  ++VS A       A  R  
Sbjct: 26  ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMAMANGASLLIVSEAR----LPAMGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++    L         +    I+AVTG+ GK++    ++ +   SG        
Sbjct: 82  VPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKTTTKEMLRHVLSPSGKVH----- 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++++SF  +N    P  + LA+ +   +  GV  V +  +  G  +  +  I+      
Sbjct: 137 -ASVASF--NNHWGVP--LTLAR-MPEDTDYGVFEVGM--NHPGEIRPLVAMIRPDVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268
           T +   H+   +  +    AK  +FE L P     +   +D ++  + + A + G   + 
Sbjct: 189 TTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNF-LDRTAQSLGIEHIH 247

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S G   K    L +         + +++ G+  +     PG     NAL A G+   +G 
Sbjct: 248 SFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAALGVVRIVGA 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYVDYAHTSNSLEM-----ILKNIR 377
           D    +E L  L    GR    G   R     G    +D ++ +N   M     +L    
Sbjct: 308 DMQKAIEALATLRPEKGR----GKRHRLVIGGGSFTLIDESYNANPASMRAAIALLAASE 363

Query: 378 TITSGRIIVVFG 389
               GR I V G
Sbjct: 364 PTGRGRRIAVLG 375


>gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 452

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 138/330 (41%), Gaps = 41/330 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  I+ V++D+R + AG +FVA+ G + D H F  QA   GA A++V+    +      
Sbjct: 20  QDLTIDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKENGAGALLVNRKLDI------ 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              + P +VV +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +
Sbjct: 74  ---DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G          +N +  P  +     L          + + A+  G     +   +  
Sbjct: 131 TAGNL--------NNDIGVPMTL-----LRLTKEHDFAVIELGANHQGEIAWTVSLTRPE 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEV 256
           A    NL   H++   + +    AK  ++   LP    AI+ AD+           S++ 
Sbjct: 178 AALVNNLAAAHLEGFGSLEGVAKAKGEIYTG-LPDNGIAIMNADNNDWLNWQSIIGSRKT 236

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            + + NA        +    IH+       +  + T++      + L PLPG   + NAL
Sbjct: 237 WRFSPNAA----DSDFTATHIHVTS-----HGTEFTLNTPTGGIEVLLPLPGRHNIANAL 287

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            AA L +A+G     +   L  L  VPGR 
Sbjct: 288 AAAALSMAVGATHDAIKTGLANLKAVPGRL 317


>gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
          Length = 445

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 114/253 (45%), Gaps = 32/253 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++    
Sbjct: 110 DKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV---- 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  L+    + ++  A +  N+  DH+D +     Y + K ++F
Sbjct: 166 ------------LELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIF 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                 +   ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    +  I+
Sbjct: 212 R----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGTLKQGDEDLIA 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +        PL G     N + A  LC A+G+    +LEH++    +P R E +G   +
Sbjct: 266 TQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG--EK 317

Query: 355 GGRIYVDYAHTSN 367
            G +++D +  +N
Sbjct: 318 NGVVFIDDSKGTN 330


>gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
 gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
          Length = 458

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V T+S
Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329


>gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 445

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 129/308 (41%), Gaps = 53/308 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  + +DSR +Q G +FVA+ G + DGH FIPQA+A+GA A++     +   F       
Sbjct: 26  VQAICTDSRQLQPGSVFVALRGERFDGHNFIPQALARGAVAVISQRPVAGPHFQ------ 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                V +T       A     + P +++A+TG++GK++    +     R G        
Sbjct: 80  -----VSDTLAAYQRIARGWREQFPPSVVAITGSAGKTTTKEMLAAALSRYG-------- 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGS 208
            + + S A  N     + I +A+ L  +  +    V +E +  G  +  RL  +     +
Sbjct: 127 -TVLKSEANHN-----NDIGVAQTLLQMRPEH-QFVVLEMAMRGPGEIRRLAQMAQPTHA 179

Query: 209 F-TNLGRDHIDYHQTQQAYFNAKMRLFEE------LLPKESPAII-YADDAYSKEVMKRA 260
             T++G  HI    ++ A   AK  L +E      LL  E P ++  A   +S + +   
Sbjct: 180 LITHIGTAHIGRLGSRAAIAAAKCELLQELGQGVALLNGEDPLLLSTAASLWSGQTLTYG 239

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            + G        +G++          + Q  T++VEG       PLPG     N +    
Sbjct: 240 LDQG------DLRGEW----------DPQAQTVTVEG--LTLPVPLPGRHHALNWMGVLA 281

Query: 321 LCIAIGID 328
              ++G+D
Sbjct: 282 ALRSLGLD 289


>gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
 gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
          Length = 426

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 187/454 (41%), Gaps = 73/454 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +S+ ++ G +FVA+ G + DGH FI +A+  GA AI+            T+ S+  I +V
Sbjct: 12  NSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAE--------RKTVNSDR-IFLV 62

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +++   L+  A    G     ++ VTG+SGK++    +  + +            +  S 
Sbjct: 63  ESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLK------------NKRSV 110

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F     + T   + L+  L+    + +  + + AS  G   H             N+G  
Sbjct: 111 FKTPGNMNTEYGLPLS-ILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSA 169

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           H+++  T++     KM + +    KE+  A+   DD   ++ + R  N     L  G +G
Sbjct: 170 HLEFFGTRERIMETKMEIIKH--SKENAIAVTLFDDPDLRKEVPRYRNT----LFFGKEG 223

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF---QVYNALVAAGLCIAIGIDS 329
               LK           TI+ E + FD LF   L G +   Q+ N  +AA LC+   +  
Sbjct: 224 GDSVLKDWWYYEGS---TIA-EFEAFDSLFTVKLSGYWNGGQLLN--IAASLCVMRTLGE 277

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSGR 383
            + +  L  L  VPGRF       + G + VD  + ++      S+E +L+       G+
Sbjct: 278 TVDIFDLASLKTVPGRF---NVREKKGVLIVDDTYNASPEAFQTSIEALLR-----FPGK 329

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEKI 428
              V G     G+R +     +G+  L++ D   V    P            +S+DPEKI
Sbjct: 330 KFAVVGAMKELGERSKEFHEELGE-RLNVLDGVYVFLSEPEAEWIKSKKIILKSDDPEKI 388

Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
             ++   +      + K +R   I   +EM  K+
Sbjct: 389 AKDLATRVKKGDVVLFKASRAVRIERVLEMFEKE 422


>gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 453

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 9/126 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  +  ++ VS+D+R I +G +F+A++G   D H FI QA+ +GA A++VS    +   
Sbjct: 17  LKGEDISVSSVSTDTRTITSGTLFIALIGENFDAHDFIEQAVIKGAAALIVSQKLQI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                  TP ++V++TR  L    S ++       +A+TG+ GK++V   +  I  + G 
Sbjct: 74  ------TTPHILVEDTRIALGKLGSIVHQLCKTPTVAITGSCGKTTVKEMLTSILSQKGQ 127

Query: 143 SSFQIG 148
             F  G
Sbjct: 128 VLFTQG 133


>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
 gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
          Length = 492

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 43/298 (14%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA+  + K  + I AVTGT+GKS+V +F  QI Q++G+ +F  G   T  S A       
Sbjct: 118 FAAEAFPKAVK-IAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFKF 176

Query: 165 PS--PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-------NLGRD 215
           PS  P Y A  L             E SS+ L+         + GSF+       NL  D
Sbjct: 177 PSDDPPYQAAVL-------------EVSSYQLE---------LPGSFSPSVGVILNLSPD 214

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H++ H++ + Y   K RLFE +   +   I +AD+   K   K  +N+G    +  + G 
Sbjct: 215 HLERHKSMENYGETKCRLFERMDSSKLSIIPHADEFLRKVAYK--YNSGS---TKAWLGA 269

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIA--IGIDSAL 331
              ++          V  + + +   +L  L   G     NA  A+ L +A  +G+D   
Sbjct: 270 LPGVQLDSQARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHK 329

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           +   + +L  +P R + VG + + G ++++ +  +N ++     I+ +   + +++ G
Sbjct: 330 LQAAIGQLTPLPHRMQIVGQDKK-GVLWINDSKATN-VDAAYTGIKGLADRKAVILLG 385


>gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
 gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
          Length = 451

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 162/372 (43%), Gaps = 36/372 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  IN VS DSR I  G +F+   G   DGH FI QA+  GA A+     +S ++  
Sbjct: 20  KYLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENR 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +     PI+ V++T   L   A          ++AVTG++GK++    ++ +      +
Sbjct: 75  YSEEIQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202
            F++  T        +N +  P        L+ L     T +S+ E    G   H+++ +
Sbjct: 131 EFKVKKTQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELL 176

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257
             IA       TN+G  H+    +++    AK  +   L  K +   IY  D+   K  +
Sbjct: 177 SNIAQPDIAIITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHV 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            +  +A  +++S+G      +   +  + N + +  ++  K+  +  P+ G   + NA +
Sbjct: 235 TQVKDA--KLISIGLNSDNTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAI 290

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   +G++  ++  ++  + +   R E   +++    I   Y  +  S++  +  + 
Sbjct: 291 AIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTL- 349

Query: 378 TITSGRIIVVFG 389
           ++  GR I++  
Sbjct: 350 SVMKGRKILILA 361


>gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 457

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+E++ +S  I    +F+A++G + DGH F  QAIA GA+A++V+    L         +
Sbjct: 24  IHEITINSNIIHKQCMFIALIGKRFDGHDFTSQAIAAGAQALLVNHHILL---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P L+V +TR  L + A  +  K    ++A+TG+SGK+SV      I +  G
Sbjct: 75  VPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSGKTSVKEMTTSILKECG 126


>gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
 gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
          Length = 454

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 158/353 (44%), Gaps = 51/353 (14%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL N  +I   ++ +  +  +S+D+R IQ   +F+A+ G+  DG  +I  A  +GA
Sbjct: 7   KTITELTN--TIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 69  EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              VV+  Y ++ D+        P++ VDNT++F+   A          ++A+TG++GK+
Sbjct: 65  SCCVVNRDYRNINDY--------PVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  + +      +++  T       Q N     + I L+K +  +     T V+V
Sbjct: 117 TTKDIMSSLLKE----KYKVVKT-------QKNY---NNEIGLSKTIFDIDDD--TEVAV 160

Query: 188 -EASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            E  +    + R   +  IA       TN+G  H+   +T++    AK  + E  L ++ 
Sbjct: 161 LEMGTENFGEIR--QLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEG-LKEDG 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE 296
             I+  DD   +EV K+ +    + ++ G      Y+ + I   +  +       T S+ 
Sbjct: 218 IFILNNDDPILREV-KQEYKLPEKNITFGIKPDSDYRMEMIKADETGS-------TFSI- 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             D  F   L G  Q+YNA ++  +   +G+D + + + L+ + +   R E +
Sbjct: 269 -NDHVFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELI 320


>gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 454

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 162/382 (42%), Gaps = 37/382 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV+ D+R +  G +FVA+ G + DGH F   A+A GA A++VS    +          
Sbjct: 25  ITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKHLLVA--------- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G 
Sbjct: 76  APQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAG- 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    P+ L   L          + + A+  G   +  D  +  +   
Sbjct: 135 -----NFNNDIGV----PLTL---LRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
            NL   H++   +      AK  +F   LP    AII AD        +  HN    R  
Sbjct: 183 NNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHNKRVWRFA 241

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +G +        V         T+           PLPG   + NAL AA L +++G  
Sbjct: 242 PLGAEDIDFFASDVRITPQVTHFTLHSPFGTVGIELPLPGRHNIANALAAAALAMSVGAS 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIV 386
            A V E L +L  VPGR   +      G++ +D ++ +N  S+    + +  +   R++V
Sbjct: 302 LAAVREGLTQLPAVPGRLFPI--ELAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMV 359

Query: 387 VFGCGGDRDQGKRPIMGKIALD 408
           V    GD  +     +G+ A+D
Sbjct: 360 V----GDMGE-----LGETAVD 372


>gi|254520318|ref|ZP_05132374.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
 gi|226914067|gb|EEH99268.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
          Length = 874

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 156/388 (40%), Gaps = 37/388 (9%)

Query: 105 FASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
             + LY   P NI  +++TGT+GK++    +     + G   + +G TST   +  D  +
Sbjct: 465 IVNMLYNDRPYNIPVISITGTNGKTTTTRVISHTLSKMG---YCVGMTSTSGIYINDECI 521

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYH 220
            +        A + L +  V    +E +  G+ +  L          TN+  DH  ID  
Sbjct: 522 DSGDDTGFDSAKAVLLNHDVDVAVLETARGGMIKKGLAYDLADVAVITNIREDHLGIDGV 581

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            + +     K  L  E + ++   ++ ADD +SK ++ R   A     S       +   
Sbjct: 582 DSMEELCYVK-SLVGEAVKEDGYVVLNADDYWSKSILNRIK-ANIIFFSKDSNNPLLKQS 639

Query: 281 KVCAIH---NKQQVTISVEGKDF------DFLFPLPGE--FQVYNALVAAGLCIAIGIDS 329
           K+  I        + +S +GK++      +    L G+  F + N L   G  + +GID 
Sbjct: 640 KISNISVYLENDDIVVSNKGKEYVICGIKEVPITLDGKLTFNIENILAICGALVGMGIDY 699

Query: 330 ALV----LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            ++      +L   H   GRF     N  G  + +DY H  +    +L  ++ I SG + 
Sbjct: 700 CMIKNGITTYLLNSHKNSGRFNCYDIN--GINVILDYGHNIDGYNSVLSAVKEINSGMLY 757

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--KG 443
            V G  GDR  G    +GKI+    D  IV +D       +   AE+I  + G  E   G
Sbjct: 758 GVIGIPGDRTNGTAKEIGKISSKYLDYIIVKEDKDLRGRKQGEVAELI--VDGITEDSDG 815

Query: 444 NRIEAI-------RTAIEMLNKQDVLVV 464
            + E I         A+ M  + D ++V
Sbjct: 816 KKYEVILSEEDAFEKALNMAKRGDTVIV 843


>gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 456

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 158/373 (42%), Gaps = 43/373 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           ++I  VS+D+R I+ G +F+A+ G   +G+ ++ +A  +GA+ AIV      L +    +
Sbjct: 27  KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKGAKIAIVDEVKCDLNE----L 82

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  ++ V NT + L   A     K    ++ +TG++GK+S    V  +        ++
Sbjct: 83  KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T    +F  +N +  P        L  L       V++ E    GL Q     IK +
Sbjct: 139 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 181

Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           A       G  TN+G  HI+  +T++    AKM +      K +  ++  +D +    + 
Sbjct: 182 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 236

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +A  +++  G    F I  K +       + T+    K+ +F   +PGE  + N ++
Sbjct: 237 SLPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 296

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
              +   +G+    +   L  +     R E +  +  G  I  D Y  +  +++  +  +
Sbjct: 297 GIAIAKELGVSFEEMKRGLNNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 354

Query: 377 RTITSGRIIVVFG 389
           + I   R I V G
Sbjct: 355 KNIEGKRRIAVLG 367


>gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 440

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 156/381 (40%), Gaps = 62/381 (16%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  +  +N++  DSR I+ G IF+ + G + DGH FI  A   GA   ++S       FS
Sbjct: 20  QLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA---IIS-------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140
                   +LV DN   F +L A     K    ++AVTG++GK++    +  +  +    
Sbjct: 69  EKEVEQAHLLVDDNLAAFQTL-AKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKYKT 127

Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  + +IG   TI    +D                 +   G+ H         L Q
Sbjct: 128 YKTQGNHNNEIGLPYTILHMPEDTE-------------KLVLEMGMDHPGDIDFLSQLAQ 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR----LFEELLPKESPAIIYADDAY 252
             L  I LI       G  H+++  +++     KM     L  EL+    P I    +A+
Sbjct: 175 PELALITLI-------GEAHLEFMGSRENIAKGKMGITAGLHGELIAPADPII----NAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             E          ++   G  G+ + + K+  I +K+++T      D     P+PG++  
Sbjct: 224 IPE--------NQKISRFGLPGEDLFITKL--IEHKERLTFETNFLDESITIPVPGKYNA 273

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
            NA++AA + +  G+  A +   L+++ +   R E+   +  G  +  D Y     ++ +
Sbjct: 274 TNAMLAAYVGLHYGLTEAEIKNALKEVELTRNRTEW-NKSKNGADLLSDVYNANPTAMRL 332

Query: 372 ILKNIRTI---TSGRIIVVFG 389
           IL+  + I    +GR I V  
Sbjct: 333 ILETFQAIPKNENGRKIAVLA 353


>gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
 gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
          Length = 445

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 140/328 (42%), Gaps = 55/328 (16%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R +  + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQRESKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVD-------------YAHTSNSLEMILKN---------IRTITSGRIIVVFG 389
             + G +++D              A   N L +IL           +RT  +G+   VF 
Sbjct: 316 -EKNGVVFIDDSKGTNVGATAAAIAGLQNLLFVILGGMGKGQDFTPLRTALAGKAKGVFL 374

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTD 417
            G D  Q +R + G   L++ D A + +
Sbjct: 375 IGVDAPQIRRDLDG-CGLNMTDCATLEE 401


>gi|309802501|ref|ZP_07696607.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308220901|gb|EFO77207.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 289

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 129/299 (43%), Gaps = 35/299 (11%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + YF  K RL    +      ++ AD  +   +M+ A +AG +V           L
Sbjct: 1   HPTFEDYFRCKRRL----IANSRSLVLGADCDHRDLLMQDAADAGIKVTEFALHDAARGL 56

Query: 280 KKVCAI------HNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGI-DSAL 331
                +       NK    +SV G D   +   + GEF V NA  A  + I  G+ +S  
Sbjct: 57  TSPAQVIARVDPENKAGFIVSVNGSDLRPMELDMSGEFNVTNAAAAVAIAIEAGVPESDP 116

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTI--TSGRIIVVF 388
            +  + ++ V PGR E V     G  +Y+D+AH   S++ ++   +RT      RI +V 
Sbjct: 117 SIAAMCRVQV-PGRMERVKAGD-GLLVYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVS 174

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-------------RAEIIHG 435
           G  G +   +R  + K AL   +  I T D+P  EDP  I             R +I+  
Sbjct: 175 GTTGGKAVDRREGIVKGALGRVESFIFTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVP 234

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               IEK     AI  A E  ++ ++++V GKG ET +I+         D  ++R +LG
Sbjct: 235 RELAIEK-----AIADAREHADRFNIVLVIGKGDETRNIINGKPVPYEGDGAVVRRVLG 288


>gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
 gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
          Length = 457

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 154/377 (40%), Gaps = 55/377 (14%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +   N+V  DSR +  G +FV + G + DGH FIP A   G   +V  S  SL     
Sbjct: 25  YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENGC--VVTLSEVSL----- 76

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------- 137
               + P ++V++    L   A+    K    ++AVTG++GK++    +  +        
Sbjct: 77  ----DVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKDMIHDVLATTYKTY 132

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +  G  + +IG   T+     D                 +   G  H+         D H
Sbjct: 133 KTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG--------DIH 171

Query: 198 RLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            L  I   + S   L G  H+++  +++     K+++ + + P  S  +I AD    K  
Sbjct: 172 LLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPG-SKLLIPADPIADK-- 228

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +  +H     ++  G Q     L+    + +K  +T +V   D D   P+ G++   NA+
Sbjct: 229 LLPSH---VDLIRFGEQAD---LQVTSLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAM 282

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
           VA+ +   +G+    +   L  L++   R E+    + G  I  D Y     ++ +IL+ 
Sbjct: 283 VASYVGKTLGVPDEAIKSALASLNLTRNRTEW-KKAANGADILSDVYNANPTAMRLILET 341

Query: 376 IRTITS---GRIIVVFG 389
             +I +   G+ I V  
Sbjct: 342 FTSIPANEGGKKIAVLA 358


>gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 454

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R I  G +FVA+VG + D H F  QA   GA A++V     +         N
Sbjct: 24  IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVEKRLDV---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P +VV +T+  L   AS ++       +A+TG+ GK++V   V  I Q+ G   F  G
Sbjct: 75  APQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAG 133


>gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
 gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
          Length = 457

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN VS+D+R ++ G +FVAIVG++ D H F  QA+   A A++V     L         N
Sbjct: 28  INAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQAVEANASALLVERKLDL---------N 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +VV++T+  L   ++ ++ +     +A+TG+ GK++V   V  I Q+ G   F  G
Sbjct: 79  ITQVVVEDTKLALGELSAWIHKQCDVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAG 137


>gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 452

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G     V   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLTAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 458

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G +++ I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V T+S
Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329


>gi|220931753|ref|YP_002508661.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
 gi|219993063|gb|ACL69666.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
          Length = 459

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 153/377 (40%), Gaps = 57/377 (15%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ I +GA+ IV+S+A    +          + V    +    L   +         +A+
Sbjct: 58  PENI-KGADMIVISTAIPEDNSELQAARKAGLPVYGRAQMIAKLMEDK-------KTIAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +GT GK++  S V  I + +     ++ PT  +     +        +YL K   +++  
Sbjct: 110 SGTHGKTTTTSMVATILKEN-----KMDPTVMVGGVLNN----IGGNVYLGKGEYFVTE- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  + S   L      G+ +     TN+  DH DY+ +++   N   + F   +PK
Sbjct: 160 ------ADESDGSLLYFDPSGVVV-----TNIEFDHHDYYDSKEKLLNT-FKEFVNKIPK 207

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+YA+D   ++++    N   RVL+ G     I+  K+ AI+    +     G  +
Sbjct: 208 DGKAIVYAEDDNIRKILD---NEDRRVLTYG-----INAGKLKAIN----INTLPFGSYY 255

Query: 301 DFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + ++           +PG   V N+L A  + + +G+    + E L K + V  RFE  G
Sbjct: 256 NLVYGERVLGEIRLQVPGVHNVLNSLAAVAVGMYVGLSFTDIQESLGKFYGVHRRFEKKG 315

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LD 408
                  I  DYAH    ++  LK  R     RII +F     R    R  M + A   D
Sbjct: 316 LID-SILIIDDYAHHPTEIKATLKAARNTGYERIIAIFQP--HRYSRTRHFMEEFAKCFD 372

Query: 409 LADIAIVTDDNPRSEDP 425
             D  IVTD    SE P
Sbjct: 373 DVDHLIVTDIYSASEKP 389


>gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14]
          Length = 453

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 154/377 (40%), Gaps = 55/377 (14%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +   N+V  DSR +  G +FV + G + DGH FIP A   G   +V  S  SL     
Sbjct: 21  YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENGC--VVTLSEVSL----- 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------- 137
               + P ++V++    L   A+    K    ++AVTG++GK++    +  +        
Sbjct: 73  ----DVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKDMIHDVLATTYKTY 128

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +  G  + +IG   T+     D                 +   G  H+         D H
Sbjct: 129 KTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG--------DIH 167

Query: 198 RLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            L  I   + S   L G  H+++  +++     K+++ + + P  S  +I AD    K  
Sbjct: 168 LLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPG-SKLLIPADPIADK-- 224

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +  +H     ++  G Q     L+    + +K  +T +V   D D   P+ G++   NA+
Sbjct: 225 LLPSH---VDLIRFGEQAD---LQVTSLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAM 278

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
           VA+ +   +G+    +   L  L++   R E+    + G  I  D Y     ++ +IL+ 
Sbjct: 279 VASYVGKTLGVPDEAIKSALASLNLTRNRTEW-KKAANGADILSDVYNANPTAMRLILET 337

Query: 376 IRTITS---GRIIVVFG 389
             +I +   G+ I V  
Sbjct: 338 FTSIPANEGGKKIAVLA 354


>gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 458

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 135/330 (40%), Gaps = 21/330 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               ++ G      +     A+            ++  F  P+ G+  VYN L +  +  
Sbjct: 240 IAETVTFGDARANDYYPTTVALQATGTHFKMNRDENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+    + + L  L +   R E V T+S
Sbjct: 300 HFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329


>gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
 gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
          Length = 449

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 153/372 (41%), Gaps = 47/372 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH +   AI +GA A++VS    + D         
Sbjct: 23  NEVQLNSKDVKKGDLFIALKGNR-DGHDYALDAIDKGAAAVIVSKQVEITD-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-----SGLSSF 145
            IL+VD+  + L   A           +A+TG+ GK+S    ++ + Q      +G  +F
Sbjct: 75  KILLVDDCFEALKKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDSLVFAGRGNF 134

Query: 146 Q--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              +G    ++S A D                 +   G+ H        G  +  +  +K
Sbjct: 135 NNYLGLLINLASMADDMEYA-------------ILELGMNH-------KGEIRELVQILK 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMKRA 260
                 TN+   H+++  + +    AK  +FE    K   A+I AD + YSK   ++K  
Sbjct: 175 PNIAVITNISEAHLEFFNSLEEIAEAKCEIFEN-FSKNDIAVINADTNCYSKILSILKNL 233

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVA 318
           +    RV + G      H + V   H   QV +   +  K  +   P        N  V 
Sbjct: 234 YID--RVYNFGILHN-THAQLVLYEHLGAQVRLKYKINNKSLEITIPFIPRHFAKNYTVV 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIR 377
             +   +G D  +   HL  ++   GR + +  N +  R+  DY + S  S++  L+ ++
Sbjct: 291 LLIIDILGKDIEIAANHLANIYPTKGRGDII--NIQNARVICDYYNASPKSMQAALEYLK 348

Query: 378 TITSGRIIVVFG 389
            + +     + G
Sbjct: 349 QVMAENKTAIIG 360


>gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
 gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
          Length = 452

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 166/392 (42%), Gaps = 42/392 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ + KI  V+ DSR +Q   +F+   G   DGH F+ Q+I  GA A    +    Q+  
Sbjct: 20  QFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQSIQDGAAAAFYQTG---QEID 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           +++    P++ V +T   L   A          ++AVTG++GK++    ++ + +    +
Sbjct: 77  SSLEEQ-PLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLK----T 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202
            F++  T        +N +  P        L+ L     T +S+ E    G   H ++ +
Sbjct: 132 QFKVKKTQG----NYNNEIGMP--------LTILELDYDTDISILEMGMSGF--HEIELL 177

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             IA       TN+G  H+    ++     AK  +   L  K++   IY  D    E + 
Sbjct: 178 SSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGL--KDNGIFIYDGD----EPLL 231

Query: 259 RAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYN 314
           + H A     +++SVG +    +   VC I + Q   I+    + + +  P+ G   + N
Sbjct: 232 QPHVAQVKHAKLISVGLEQNNTY---VCTIDSNQNDGIAFNINNTEHYELPILGVHNMRN 288

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +A  +   +G+   ++  +++ + +   R E   T  +   I   Y  +  S++  + 
Sbjct: 289 AAIAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASID 348

Query: 375 NIRTITSGRIIVVFGC--GGDRDQGKRPIMGK 404
            +  +   +I+++  C   GD  Q     +G+
Sbjct: 349 TLSNMEGRKILILADCLELGDNSQHMHEEIGE 380


>gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 458

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + E L  L +   R E V T+S
Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329


>gi|227872145|ref|ZP_03990515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
 gi|227842003|gb|EEJ52263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
          Length = 434

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 148/343 (43%), Gaps = 66/343 (19%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++++  DSR      +FV I G K+DGH FIP AI  GA  I     ++ +D S   +  
Sbjct: 12  VDKIILDSREDCTKGLFVPIKGEKQDGHRFIPMAIEHGASFI-----FTEEDCSELSKEY 66

Query: 90  TPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRS 140
             +  + V++T   L          +   ++ VTG+ GK++  + +       + + +  
Sbjct: 67  PEVRFISVESTIDALQALGGYARSLYSGLVIGVTGSVGKTTTRAMIAKALSVEKSVFETK 126

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G ++ Q+G   T+ S A++N+    S I L      +S  G  H   E +S  +      
Sbjct: 127 GNANSQLGLPITLFSMAKENK--EISVIELG-----ISIPGEMHRIGEIASCDI------ 173

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                   FTN+G  H++  +T++     KM + E    KE    +   DA    + +  
Sbjct: 174 ------AVFTNIGSAHLENLKTKENTCFEKMHILEG-NQKEVSLYLPKKDAILGTLTEE- 225

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                ++ ++G+ G+    KK+       K+++ +SV           PGE    NA VA
Sbjct: 226 -----KIRAMGFLGE----KKLNLFFYEKKEEIPLSV-----------PGEHMEDNASVA 265

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             + +++G+       H +KL  + G  EF G   RGGR+  +
Sbjct: 266 MAIGLSLGL-------HKQKL--LQGLLEFQGLKGRGGRLSTE 299


>gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
 gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
          Length = 453

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 156/370 (42%), Gaps = 37/370 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           ++I  VS+D+R I+ G +F+A+ G   +G+ ++  A  +GA+ AIV      L +    +
Sbjct: 24  KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  ++ V NT + L   A     K    ++ +TG++GK+S    V  +        ++
Sbjct: 80  KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T    +F  +N +  P        L  L       V++ E    GL Q R   +  I
Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQIR--ELAEI 181

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           A    G  TN+G  HI+  +T++    AKM +      K +  ++  +D +    +    
Sbjct: 182 ASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LGALP 236

Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            A  +++  G    F I  K +       + T+    K+ +F   +PGE  + N ++   
Sbjct: 237 EAEYKIVKTGVGENFEIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIA 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           +   +G+    +   L  +     R E +  +  G  I  D Y  +  +++  +  I+ I
Sbjct: 297 IAKELGVSFEEMKRGLNNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVIKNI 354

Query: 380 TSGRIIVVFG 389
              R I V G
Sbjct: 355 EGKRRIAVLG 364


>gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
 gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
          Length = 501

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 129/321 (40%), Gaps = 58/321 (18%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  QAG +F+ ++GNK DGH FI  A+ +       +SA    +    + S  P + V
Sbjct: 78  DSRKAQAGDLFIPLLGNKVDGHRFIEPAMER-------ASATLTSEHDNVVISEKPFIRV 130

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGLSSFQIG 148
           D+T K L      + G++    + VTG+ GK++    +       +   Q +G  + QIG
Sbjct: 131 DDTMKALQAIGKDIRGRYDIPYIGVTGSVGKTTTREMIAAAVGTGRHCFQTNGNENSQIG 190

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T+S      R+T                     + +  S  G  +   D ++     
Sbjct: 191 VPMTLS------RMT--------------DGYDAAVIEMGISEPGQMEILSDIVRPSICV 230

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G  HI++ +TQ+   + K+ +    + +    ++  DD   +E+     +  C+ L
Sbjct: 231 VTMIGVAHIEFMKTQENIRDEKLSIVNH-MKENGLLLLNGDDPLLREI---KDDMSCQTL 286

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQVYNALVAA 319
           + G       + +VC       V    +G +FD          +  + G+  V NAL   
Sbjct: 287 TFG-------IDEVCDFQG-SDVQCGEQGMEFDCTHNGETVHVVMDVLGKHNVRNALAGI 338

Query: 320 GLCIAIGI---DSALVLEHLE 337
            +   +GI    +A   EH E
Sbjct: 339 AVAYQLGIPMATAAKAFEHFE 359


>gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
 gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
          Length = 427

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 156/365 (42%), Gaps = 47/365 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R I  G +F A+ G   +G+ F  QA+  GA  +V+      Q    TI      
Sbjct: 16  ICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGETI------ 69

Query: 93  LVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            + DN+ + L   AS  R Y   P  ILA+TG++GK++    +  +  +      +   T
Sbjct: 70  -LTDNSLECLQKLASFHRQYLNIP--ILALTGSNGKTTTKELIHAVLSK------KFNTT 120

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA--- 206
           +T  +   +N +  P        L+ LS    T +  VE  ++ L +  ++ +  IA   
Sbjct: 121 ATKGNL--NNHIGVP--------LTLLSMTKETEIGIVEMGANHLKE--IETLCHIAQPN 168

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN G+ H++   + +     K  L++ ++  +    + A+DA   E+ K+      
Sbjct: 169 YGYITNFGKAHLEGFGSLEGVIKGKTELYKHIVKSDGLLFVNANDAKQLELTKKE----- 223

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +  + G +G    +K + A    +++ IS +G+  +    L G +  +N   A  +    
Sbjct: 224 KRYTFGNEGNDCEIKLLEAT---KELIISYQGQSIN--SNLIGLYNYHNIAAAIAIGQYF 278

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            + +  V E +E+      R + +  N  G  I +D Y    +S+   L N +       
Sbjct: 279 KVSATKVKEAIEEYIPTNNRSQIIKQN--GHTIILDAYNANPSSMTAALDNFKQTVGNNK 336

Query: 385 IVVFG 389
           I++ G
Sbjct: 337 ILILG 341


>gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
 gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
          Length = 475

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 112/492 (22%), Positives = 202/492 (41%), Gaps = 81/492 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+   VS D+R ++AG +F AI G   DGH F+  A  +GA A V+  A++  +FS    
Sbjct: 26  REATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAFEKGAAAAVIDEAHA-AEFSGA-- 82

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P+L+V + ++ L +   R   +    I A+TG+ GK+S     + +  R G +    
Sbjct: 83  --GPLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTSTKDMTRLMLSRFGETH--- 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLI 205
              ++++S+  +N+     P+ LA+ +   S  GV  + +  +    GL       ++  
Sbjct: 138 ---ASVASY--NNQWGV--PLTLAR-MPAASRFGVFELGMNHAGEITGLVAQ----VRPH 185

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H+++  + +   +AK  +F  L      AII  DDA  + +   A     
Sbjct: 186 VAVVTRVAAVHLEHFASVEGIADAKAEIFSAL--DGGVAIINRDDATYERLAAAAAPTAG 243

Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            + S G  +G    L     I +  +V   + GK   +    PG+    N+L A  +   
Sbjct: 244 HIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHIALNSLAALLIAAV 303

Query: 325 IGID---SALVLEHLEKLHVVPGRFEFVGTNSRGGR----------IYVDYAHTSNSLEM 371
             ID   +AL L             +F   + RG R            +D ++ +N   M
Sbjct: 304 FDIDVEKAALTLA------------DFTPPSGRGAREKLMAPSGPFTLIDESYNANPTSM 351

Query: 372 -----ILKNIRTITSGRIIVVFG-------CGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
                +L        GR I V G       CG +       + G++A+DLA       D 
Sbjct: 352 RSAFELLGATTPGAGGRRIAVLGDMLELGPCGAE-------LHGELAVDLARAKC---DL 401

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
             +  P  + A + +  P  +   +R    RTA+E+   ++ ++ A +  + V +  +  
Sbjct: 402 LFTAGP--LMASLYYAAPNAMRAAHR----RTALEL---EEAVLAALRAGDVVMVKGSNS 452

Query: 480 KKMSVDCDIIRE 491
            +MS     +R+
Sbjct: 453 SRMSRIVAAVRQ 464


>gi|240014781|ref|ZP_04721694.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI18]
 gi|240017229|ref|ZP_04723769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA6140]
 gi|240081134|ref|ZP_04725677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA19]
 gi|240121304|ref|ZP_04734266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID24-1]
 gi|240124137|ref|ZP_04737093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID332]
 gi|240126247|ref|ZP_04739133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-92-679]
 gi|254494321|ref|ZP_05107492.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268597245|ref|ZP_06131412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268682762|ref|ZP_06149624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268684828|ref|ZP_06151690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
 gi|226513361|gb|EEH62706.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268551033|gb|EEZ46052.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268623046|gb|EEZ55446.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268625112|gb|EEZ57512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
          Length = 445

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADD + +  MKRA     +  S+ ++  F   +    +    + 
Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            IS +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
 gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
          Length = 476

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 161/390 (41%), Gaps = 35/390 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F+AI G++ DGH ++  A+  GA   +V+     +D    +  +
Sbjct: 27  ITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAAALEAGASLALVA-----EDSLGDLPDD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VVD+  + +         +    I+AVTG+ GK+     ++     SG        
Sbjct: 82  GRYVVVDDPLEAMRALGVAARARTNARIVAVTGSVGKTGTKEALRLALAPSGKVH----- 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLIAG 207
            ++++SF  +N      P+ LA+ +   +  GV  + +  +     L Q     + +I  
Sbjct: 137 -ASVASF--NNHWGV--PLTLAR-MPADTDFGVFEIGMNHAGEITPLVQMVRPHVAII-- 188

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR- 266
             T +   HI++ ++ +    AK  +F  L P +  AI+  D+     +   A  A  R 
Sbjct: 189 --TTVEAVHIEFFESVEKIAQAKAEIFNGLEP-DGVAILNRDNKQYDLLRFLAATAAVRN 245

Query: 267 VLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V + G  G +  HLK   A  +   V  S+ G+D  +    PG   V N+L        +
Sbjct: 246 VQTFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSLAVLTAVADL 305

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEM-----ILKNIRTI 379
           G D       L  +    GR E    +  GG +  +D ++ +N   M     +L      
Sbjct: 306 GADLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAFSVLAQATLG 365

Query: 380 TSGRIIVVFG----CGGDRDQGKRPIMGKI 405
            SGR I V G     G D DQ    + G I
Sbjct: 366 GSGRRIAVIGDMRELGTDADQLHAELEGPI 395


>gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 460

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 152/376 (40%), Gaps = 55/376 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S+D+R   A  +F A+ G   D H ++ +A+AQGA A+VV  A +        + +
Sbjct: 25  VENISTDTRQRVASSLFFALKGEHFDAHNYLDKAVAQGANALVVERADT--------QIS 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR  L   A  +  +     LA+TG+SGK++V      I Q +      +G 
Sbjct: 77  VPQLIVKDTRIALGELAKWVKQQVNPRTLAMTGSSGKTTVKEMTASILQSA------VGV 130

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--------GVTHVSVEASSHGLDQHRLDG 201
              +  F Q N     + I +   L  L+ Q        G  H    A + GL Q     
Sbjct: 131 EQVL--FTQGN---FNNDIGVPLTLLRLTEQHQFAVIELGANHQGEIAYTTGLVQ---PN 182

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + L+     N+   H++   + +    AK  ++  L P +  AII  +  Y       A 
Sbjct: 183 VALV----NNVAAAHLEGFGSLEGVATAKGEIYRGLQP-DGVAIINKEHDYRS---TWAQ 234

Query: 262 NAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQ 311
           + G  RV    YQ          A      V     G  FD   P       LP  GE  
Sbjct: 235 DIGAHRVQYFAYQDN-------TADFYADNVIFHEAGSTFDLCTPQGKTTIHLPYLGEHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL A+ L + +G   A + + LE    V GR   V        +   Y    +SL+ 
Sbjct: 288 VKNALAASALAMNVGATLAQIKQGLEVRTQVKGRLYPVQPCDNLLLLDDTYNANVDSLQS 347

Query: 372 ILKNIRTITSGRIIVV 387
            ++ ++   + RI+VV
Sbjct: 348 AIRVLQKYDAFRILVV 363


>gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 471

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 156/363 (42%), Gaps = 71/363 (19%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ D+R + AG +++A+ G + DGH F   A+A+GA A++V     L D  A     
Sbjct: 24  VDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAVALLVE---RLLDVDA----- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS------ 143
            P L+V+++   L+  A+ +       ++A+TG++GK+SV + V  + Q++G +      
Sbjct: 76  -PQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALVLSVLQQAGQAYANPGN 134

Query: 144 -SFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVEASSHGLDQH 197
            + +IG    +    +D        IY   A     ++YL+      VS+          
Sbjct: 135 RNNEIGLPLAVIDAPEDADFA----IYEMGAGKPGDIAYLTDIARPDVSL---------- 180

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---- 253
               +  IA +      D +    T+ A + A        LP    A++ ADDA+     
Sbjct: 181 ----VNNIAAAHLERMGDLLGVATTKGAIYAA--------LPAGGTAVVNADDAFGAWFE 228

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------- 305
           +EV++ A   G ++L  G            A    + V    EG  F  + P        
Sbjct: 229 QEVVRPA-GTGRQLLRFGLD--------ASAEVTARDVQAGAEGSRFVLVTPQGEAAIEL 279

Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V NAL AA + +A G+  A +   L +   V GR   V     GG + VD ++
Sbjct: 280 ALPGRHNVRNALAAAAIGLACGVSLAAIAAGLGQARPVAGR--QVAHGLPGGVVLVDDSY 337

Query: 365 TSN 367
            +N
Sbjct: 338 NAN 340


>gi|73542271|ref|YP_296791.1| cyanophycin synthetase [Ralstonia eutropha JMP134]
 gi|72119684|gb|AAZ61947.1| Cyanophycin synthetase [Ralstonia eutropha JMP134]
          Length = 856

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 129/314 (41%), Gaps = 35/314 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA    G+ P  ++AV+GT+GK++    +  I   SGL   ++G T T   + +  R+
Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHIMATSGL---RMGMTGTDGVYIRGERI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219
            T        A + L    V     E +  GL +  L   +      TN+G  DH+   +
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSF 574

Query: 220 HQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271
             T +     K  + + + P          P ++   DA    V   AH+ G   ++   
Sbjct: 575 ISTVEDLAVLKSVIVQNVAPHGMAVLNAADPMVVRMADACPGLVTFFAHDPGQPAMATHR 634

Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIA 324
            QGK   F+    + A     ++ I +         PL       FQV NA+ + G   A
Sbjct: 635 AQGKRVVFVDGDHIVASEGDNEMRIPLA------EIPLTRNGTIGFQVENAMSSIGAAWA 688

Query: 325 IGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +GID  ++   L          PGRF     + RG  +  DY H  ++++ +   ++T+ 
Sbjct: 689 LGIDWNVIRRGLATFVNDAQTAPGRFNVF--DYRGATLIADYGHNPDAIQALCNAVQTMP 746

Query: 381 SGRIIVVFGCGGDR 394
           + R +VV    GDR
Sbjct: 747 AKRRLVVISGAGDR 760


>gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
          Length = 454

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R I  G +FVA+VG + D H F  QA   GA A++V     +         N
Sbjct: 24  IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVEKRLDV---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P +VV +T+  L   AS ++       +A+TG+ GK++V   V  I Q+ G   F  G
Sbjct: 75  APQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAG 133


>gi|194099349|ref|YP_002002449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae NCCP11945]
 gi|226722939|sp|B4RQC7|MURD_NEIG2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193934639|gb|ACF30463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae NCCP11945]
          Length = 445

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADD + +  MKRA     +  S+ ++  F   +    +    + 
Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            IS +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|294784923|ref|ZP_06750211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486637|gb|EFG33999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
          Length = 607

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 167/379 (44%), Gaps = 54/379 (14%)

Query: 2   KLQDLIY---KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK 53
           K + LIY   KDF E++     N+L IF    ++ +I  V  DSR +  G +F AI    
Sbjct: 164 KNETLIYENLKDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVIEGSLFFAI---- 218

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            +G+ ++   + +GA ++V++    ++D          ++ V +T   +   A++   K 
Sbjct: 219 NNGNSYVKDVLDKGA-SLVIADNTDIKD--------KRVIKVTDTIATMQDLATKYRNKL 269

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++    V        L S +     T  ++  +N +  P  +     
Sbjct: 270 DIQVVGITGSNGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL----- 316

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMR 232
           L+    +    + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  
Sbjct: 317 LNVTDEEKFVVLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTE 375

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L  E + KE+   +  DD Y              V  +G+ G   H  K     NK    
Sbjct: 376 LL-EFVDKEN-TFVCGDDEYL---------GKLDVNKIGFNGNNTHKIKSYDFSNKGSKF 424

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I ++GK+++    L G+  + N  +A  L   IG+    + + L+++ +   RF+ +   
Sbjct: 425 I-LDGKEYE--MSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI- 480

Query: 353 SRGGRIYVDYAHTSNSLEM 371
             G  IY++ A+ ++ + M
Sbjct: 481 --GNDIYINDAYNASPMSM 497


>gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
 gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
          Length = 456

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 166/397 (41%), Gaps = 61/397 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYSLQDFSATIRSNT 90
           DSR I +G +FV + G + DGH FIP A AQGA A      V   AY             
Sbjct: 32  DSRLIGSGDLFVPLKGAR-DGHNFIPTAFAQGAAATLSERPVAEGAY------------- 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+        A     K   ++LAVTG++GK++    + Q+      +S++   T
Sbjct: 78  --ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA----TSYKTYKT 131

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
                   +N +  P  I       ++       V      H  D H L  + K   G  
Sbjct: 132 QG----NYNNEIGLPYTIL------HMPENTEKLVLEMGQDHLGDIHLLSELAKPKTGIV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +G  H+++  ++      KM++ + L  K+   I+ AD     +++     A C+++ 
Sbjct: 182 TLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD-----KIVNEFLPADCKLVR 235

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIA 324
            G     I L ++     +++ ++S E    +FL      P+ G++   NA++AA   + 
Sbjct: 236 FGPDSD-IFLTRL----EERKDSLSFE---CNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-- 381
            G+  A + +   +L +   R E+    S G  I  D Y     ++ +IL+   TI +  
Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKA-SNGADILSDVYNANPTAMRLILETFSTIPTNP 346

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            GR + V     +     + + G +   L +  IVTD
Sbjct: 347 GGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382


>gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
 gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
          Length = 450

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 135/328 (41%), Gaps = 42/328 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I EV+ D+R +  G +FVA+ G + DGH F   A         V++       S  +  
Sbjct: 20  EITEVTIDTRQVTGGCLFVALKGERFDGHDFAENA---------VAAGAGALLVSKRLLV 70

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G
Sbjct: 71  GAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAG 130

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 +F  D  +    P+ L   L          + + A+  G   +  D  +  +  
Sbjct: 131 ------NFNNDIGV----PLTL---LRLTPEHDFAVIELGANHVGEIAYTTDLSRPESAL 177

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             NL   H++   +      AK  +F   LP    AII AD        +  H+   RV 
Sbjct: 178 VNNLSAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHHK--RVW 234

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYNALVA 318
               Q G+ I            +V I+ +   F             PLPG   + NAL A
Sbjct: 235 RFSSQAGEDIDFF-------ASEVRITAQATHFTLHSPFGTQAIELPLPGRHNIANALAA 287

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           A L +++G D A V + L +L  VPGR 
Sbjct: 288 AALAMSVGADLAAVRQGLTQLQAVPGRL 315


>gi|311063990|ref|YP_003970715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
 gi|310866309|gb|ADP35678.1| Mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 519

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 179/427 (41%), Gaps = 52/427 (12%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC 137
           DFSA   +  P L+V++ RK +SL ++  YG+ P++ L V G   T GK++ A F Q + 
Sbjct: 84  DFSA--ETGAPGLIVNDARKAMSLLSAEFYGR-PQDELTVVGITGTKGKTTTAYFTQAV- 139

Query: 138 QRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               L++   G  +  SS           ++ LTTP  +   + +   +  G+ ++ +E 
Sbjct: 140 ----LNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEV 195

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           SS      R+ G+     +F N+  DHI    H T + Y   K     +++      ++ 
Sbjct: 196 SSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCK----RQIVCNSRALVLG 251

Query: 248 ADDAYSKEVMKRAHNAGCRVLS---------VGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           A   ++  + + A +AG  V +          G    ++      A H+  +  I+  G 
Sbjct: 252 AASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAAYVTASPANAEHSAYR--IAAGGA 309

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLHVVPGRFEFVGTNSR 354
           D  +F   L G+F   NA  A  +  A GID    A     +E + +  GR E       
Sbjct: 310 DLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIA-GRMEQFHDPQS 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                VDYAH   S+  +L  +         RI +V G  G++   +R  + + A    D
Sbjct: 369 NTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHRID 428

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEK--GNRIEAIRTAI----EMLNKQDVLV 463
             I T ++  +E    I  E+     +PG       +R  A+  AI       ++ ++++
Sbjct: 429 SFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARAHADRFNIIL 488

Query: 464 VAGKGHE 470
           + GKG E
Sbjct: 489 IIGKGDE 495


>gi|15606557|ref|NP_213937.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
 gi|6919927|sp|O67373|MURC_AQUAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2983764|gb|AAC07323.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
          Length = 454

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 155/360 (43%), Gaps = 40/360 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G+ GK++  S + +I   +GL      PT  I    +  RL T + +         
Sbjct: 109 IAVSGSHGKTTTTSMIAEILINAGLE-----PTVIIG--GRLKRLGTNAKL--------- 152

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   VS    S G        + +I    TN+ ++H+D+++     F      FE+ 
Sbjct: 153 -GRGELLVSEADESDGSFLKLQPAVAVI----TNVDKEHLDFYEN----FERVKEAFEQF 203

Query: 238 L---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293
           +   P    A++  DD    +++K++H    RV++ G      +  K +     + +  +
Sbjct: 204 MNSVPFYGFAVVNLDDPTLAQLVKKSHE---RVITYGINSPALVRAKNLYLKEGRYEFGV 260

Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +GK+   +   + G   VYNAL A G+ + +G+   ++ + LE+      R E  G  
Sbjct: 261 EFKGKELGRIHLGIAGIHNVYNALAATGVALELGVSFEVIKKSLEEFRNAERRLELKGY- 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +   +Y DY H    ++ ++ ++R +   + ++VVF     R      +       L D
Sbjct: 320 YKNSPVYDDYGHHPTEIKAVINSLRDMYPDKNLLVVFQP--HRYSRTYYLFEDFVKVLKD 377

Query: 412 I--AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I   IVTD  P SE+    + AE +    G +   ++ E      E+ ++ DV++  G G
Sbjct: 378 IDKLIVTDIYPASENNVYGVSAEELARKSGAVFAKDKEEVFEKVREVHDEGDVILFLGAG 437


>gi|239999606|ref|ZP_04719530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae 35/02]
 gi|240113346|ref|ZP_04727836.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae MS11]
 gi|240116307|ref|ZP_04730369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID18]
 gi|260439876|ref|ZP_05793692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI2]
 gi|268595417|ref|ZP_06129584.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268599420|ref|ZP_06133587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268601974|ref|ZP_06136141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291043152|ref|ZP_06568875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|268548806|gb|EEZ44224.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268583551|gb|EEZ48227.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268586105|gb|EEZ50781.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291012758|gb|EFE04741.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|317164858|gb|ADV08399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 445

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADD + +  MKRA     +  S+ ++  F   +    +    + 
Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            IS +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|15896472|ref|NP_349821.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
 gi|25008805|sp|Q97E89|MURC_CLOAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15026298|gb|AAK81161.1|AE007818_7 UDP-N-acetylmuramate-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
          Length = 458

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 141/357 (39%), Gaps = 50/357 (14%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLS 103
           + G+  +G   I +    GAE  +  +  ++ +     ++A I  + P L+    +  +S
Sbjct: 37  VSGSDMNGSPMIDKLKEHGAEIYLGHNEKNINNVDIVVYTAAIPEDNPELIYAR-KNNIS 95

Query: 104 L-----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---S 155
           L     F   L   H  NI A++GT GK++  S V  I          + PT  +     
Sbjct: 96  LMTRAEFLGSLMKGHKYNI-AISGTHGKTTTTSMVSHIALTE-----DVDPTILVGGNLD 149

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
               N L   S  ++ +A  Y +S              L+ +   G+ L      N+  D
Sbjct: 150 IINGNVLAGKSDYFITEACEYKASF-------------LEFYPYIGVIL------NIDAD 190

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+DY++      N   + F  L+PKE   I  ADD   K V + A NA C V+S G    
Sbjct: 191 HLDYYKNIDDIENTFAK-FVNLIPKEGYLIANADD---KRVARVASNATCNVVSFGIDNG 246

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSAL 331
            I  K +    N+   +     K  + LF +    PG+  + NAL A    + + I    
Sbjct: 247 DIRAKNIS--FNESGFSSFDVYKSSELLFNIELNVPGKHNILNALSAIASALTLKISHKS 304

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +++ L+       RFE  G    G  +  DYAH    ++  L   +     +I  VF
Sbjct: 305 IIDGLKSFKGTHRRFEIKGV-KNGITVIDDYAHHPTEIKATLDAAKNYPHNKIYCVF 360


>gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 452

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G     V   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLTAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
 gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
          Length = 468

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 165/400 (41%), Gaps = 33/400 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R +QAG +FVA+ G K DG  F   A+  GA A+++    S        R +  +
Sbjct: 31  ITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRMSGAV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T       A     K    ++AVTG++GK++            G          T
Sbjct: 91  IGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRG------AVCRT 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGV-THVSVEASSHGLDQHRLDGIKL--IAGSF 209
            +++  +N +  P        L+ L   G  T   VE    G  Q            G  
Sbjct: 145 AANY--NNEIGLP--------LTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVL 268
           TN+G  H++   + +    AK  L   + P     I+ ADDA  + V  RA  A G R+L
Sbjct: 195 TNVGETHMELLGSIENIARAKAELVAAIAPG-GIVILNADDA--RVVAMRAQAADGVRIL 251

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G + +  I  + + +  N+ +  ++  G+  D+  PL G   VYNAL A     A+G+
Sbjct: 252 TYGIRAEADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNALAALAAGFALGL 311

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385
               +   L +L     R+E    +  G   +++ A+ ++  S+   L+    +  GR I
Sbjct: 312 SPQEMQAGLSRLAPPKMRYEV---HHVGAWTFINDAYNASPASMRAALETTARLYPGRRI 368

Query: 386 VVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            V G     G    +G R +    A +   + I   D  R
Sbjct: 369 AVLGDMLELGAASAEGHRSVGRTAAAEGFAVVITYGDEAR 408


>gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M04-240196]
          Length = 445

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC AIG+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|325510630|gb|ADZ22266.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           EA 2018]
          Length = 458

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 141/357 (39%), Gaps = 50/357 (14%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLS 103
           + G+  +G   I +    GAE  +  +  ++ +     ++A I  + P L+    +  +S
Sbjct: 37  VSGSDMNGSPMIDKLKEHGAEIYLGHNEKNINNVDIVVYTAAIPEDNPELIYA-RKNNIS 95

Query: 104 L-----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---S 155
           L     F   L   H  NI A++GT GK++  S V  I          + PT  +     
Sbjct: 96  LMTRAEFLGSLMKGHKYNI-AISGTHGKTTTTSMVSHIALTE-----DVDPTILVGGNLD 149

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
               N L   S  ++ +A  Y +S              L+ +   G+ L      N+  D
Sbjct: 150 IINGNVLAGKSDYFITEACEYKASF-------------LEFYPYIGVIL------NIDAD 190

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+DY++      N   + F  L+PKE   I  ADD   K V + A NA C V+S G    
Sbjct: 191 HLDYYKNIDDIENTFAK-FVNLIPKEGYLIANADD---KRVARVASNATCNVVSFGIDNG 246

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSAL 331
            I  K +    N+   +     K  + LF +    PG+  + NAL A    + + I    
Sbjct: 247 DIRAKNIS--FNESGFSSFDVYKSSELLFNIKLNVPGKHNILNALSAIASALTLKISHKS 304

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +++ L+       RFE  G    G  +  DYAH    ++  L   +     +I  VF
Sbjct: 305 IIDGLKSFKGTHRRFEIKGV-KNGITVIDDYAHHPTEIKATLDAAKNYPHNKIYCVF 360


>gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
 gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
          Length = 454

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 130/312 (41%), Gaps = 33/312 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ ++S+D+R I  G +F+A+ G   DGH F  QA+  GA A+V                
Sbjct: 24  EVKDISTDTRTITEGSLFIALKGANFDGHDFAAQAMEAGAVAVVTERPV----------D 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               L+VD+T + L   AS    +    ++ +TG+ GK++    +  +  +     F+  
Sbjct: 74  GARCLIVDSTSQALLDAASYYRSRFDIPLVGITGSVGKTTTKEMIWSVMSK----GFK-- 127

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAG 207
              T+ + A  N     + + + K L  L S     V     +H  +  R+    K    
Sbjct: 128 ---TLKTEANHN-----NEVGMPKTLLELDSTHQAAVIEMGMNHKGEISRMSTSCKPTVC 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+   +Q+    AKM + +     ++P I+  DD     ++ +    G R 
Sbjct: 180 VITNIGVSHIENLGSQEGILKAKMEILDG-ASADAPLILSRDD----RILSKVQVYGDRK 234

Query: 268 L---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +   SV  +   ++   + A       TI    +         GE  V NAL A  +  A
Sbjct: 235 IWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEHNVKNALAAFCVGAA 294

Query: 325 IGIDSALVLEHL 336
           +G+D+A ++  L
Sbjct: 295 LGMDNADIIAGL 306


>gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           tropica CNB-440]
 gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinispora tropica CNB-440]
          Length = 471

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 155/376 (41%), Gaps = 57/376 (15%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V  DSR +  G +FVA  G + DGH +   AI  GA A+              + +  
Sbjct: 28  GSVEFDSRKVGPGGLFVAFPGERVDGHDYAEGAIRAGAVAV----------LGTRVVAGV 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P+++VD+ +  L   A  +  + P+  ++ +TG+SGK+S    +  +  R       +GP
Sbjct: 78  PMVLVDDAQVALGRLARAVVDRLPDLTVVGLTGSSGKTSTKDVIAALTAR-------LGP 130

Query: 150 T-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDGIK 203
           T +   SF  +N L  P + +       YL     ++GV HVS          +  + + 
Sbjct: 131 TVAPPGSF--NNELGHPYTALQADPETRYLVLEKGARGVGHVS----------YLCEVVP 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+G  HI    +++    AK  L    LP E  A++ ADD     +  R    
Sbjct: 179 PQISVVLNVGVAHIGEFGSRETIALAKGELVAA-LPAEGLAVLNADDDLVAAMATRTR-- 235

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             RV+  G +     ++ V  + +++       ++ EG+       L G  QV N+L AA
Sbjct: 236 -ARVVRYG-EAAEADVRAVDVVLDERGRPSFTLVTPEGR-APVRLGLTGRHQVSNSLAAA 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGR----FEFVGTNSRGGRIYVDYAHTSN--SLEMIL 373
            +   +G+    +   L +L +V  R    FE V      G   +D ++ +N  S+   L
Sbjct: 293 AVARELGMPVTELATALGELGLVSSRRMDVFERV-----DGVTVIDDSYNANPASMAAAL 347

Query: 374 KNIRTITSGRIIVVFG 389
           + +      R I V G
Sbjct: 348 RALAGFRRRRTIAVLG 363


>gi|325130846|gb|EGC53579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis OX99.30304]
          Length = 445

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++  DDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNVDDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+   KD     PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIAT--KDI----PLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 445

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 144/327 (44%), Gaps = 45/327 (13%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRK 100
           VA +G   DG +F    +  A++ G + + +S   S +  D  A  + N   ++ D    
Sbjct: 43  VAQIGKMFDGPVFYTGRLKDALSNGFDILALSPGISERQPDIEA-FKQNGGRVLGD---- 97

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            + L A  +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  
Sbjct: 98  -IELLAD-IVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQ 155

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           R    + +++                +E SS  L+    + ++  A +  N+  DH+D +
Sbjct: 156 REGKKAGVWV----------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y + K ++F      +   ++ ADD + +  MKRA     +  S+ ++  F   +
Sbjct: 198 DDLLDYAHTKAKIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKWFSLEHEADFWLER 251

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +   +    +  I+ +        PL G     N + A  LC A+G+    +LEH++   
Sbjct: 252 ETGRLKQGDEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +P R E +G   + G +++D +  +N
Sbjct: 306 GLPHRVEKIG--EKNGVVFIDDSKGTN 330


>gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
 gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
          Length = 464

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 31/325 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +VS+D+R      +F A+ G   D H ++ QA+ QG  A+VV     +         +
Sbjct: 25  VEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVEQGCSAVVVERECDV---------D 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQICQRSGLSSF 145
            P L+V +TR  L   A  L  K     +A+TG+SGK++V    AS +Q++ Q      F
Sbjct: 76  VPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKTTVKEMTASILQKVAQDPDAVLF 135

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G      +F  +N +  P  +     L   S      + + A+  G   + +D ++  
Sbjct: 136 TQG------NF--NNDIGVPLTL-----LRLESKHKFAVIELGANHQGEIAYTVDLVQPD 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVM-KRAHNA 263
                N+   H++   + +    AK  +++ L       + Y     Y K+   ++  NA
Sbjct: 183 VALVNNVAAAHLEGFGSVEGVAQAKGEIYQGLSENGIAIMEYEHSVRYQKKYWYEQIGNA 242

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGL 321
             R+ SV  +    + +++       Q T+    EG +     P  G   V NA+ AA L
Sbjct: 243 DTRLFSVMGKVSDYYAQEIKLTETGSQFTLCCIREG-EIKINLPYLGLHNVSNAVAAASL 301

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346
            + +G+    +   LEK   V GR 
Sbjct: 302 ALCLGVSLEQIKAGLEKKSYVKGRL 326


>gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
 gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea]
 gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
          Length = 455

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 121/302 (40%), Gaps = 37/302 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VSSDSR I    +FVA+ G+K DGH F   A+  GA A++V     L        + T +
Sbjct: 27  VSSDSRAIPEQTLFVALKGDKFDGHNFANTAVENGAIALLVDHELPL--------NITQV 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-------SGLSSF 145
           +V D  R    L A       P ++ A+TG++GK+SV   V  I  +       +G  + 
Sbjct: 79  IVKDTQRAMGELGAYLKELIQPRSV-ALTGSNGKTSVKEMVATILSQRHKVLYTAGNFNN 137

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   T+     D+                    GV  +   A+  G   +    +K  
Sbjct: 138 EIGVPLTLLRLEADDEF------------------GVFELG--ANHKGEIDYTSSLVKPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+   H++   + +   +AK  +F  L P  + AII ADD ++  ++  + +   
Sbjct: 178 VALVNNVASAHLEGFGSLEGVASAKSEIFNHLTPTGT-AIINADDGFASVMLAASTDYTQ 236

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
               +                   +  +S   +      PLPG  QV NAL A  +C++ 
Sbjct: 237 LTFGIDSAADIQASDLEADPMGCYRFKLSYLRETLLIALPLPGRHQVSNALAATAICLSF 296

Query: 326 GI 327
           G+
Sbjct: 297 GL 298


>gi|125975108|ref|YP_001039018.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|256003237|ref|ZP_05428229.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281418473|ref|ZP_06249492.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|189029009|sp|A3DIP6|MURC_CLOTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125715333|gb|ABN53825.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|255992928|gb|EEU03018.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281407557|gb|EFB37816.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|316939274|gb|ADU73308.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           1313]
          Length = 469

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 139/323 (43%), Gaps = 51/323 (15%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG----KHPENILAVTGTSGKSSVASFVQQIC 137
           ++A ++S+ P L    +    +L  + L G    K+P ++ AV+GT GK++  S +  I 
Sbjct: 77  YTAAVKSDNPELAKAKSLGIPTLDRATLLGEIMKKYPFSV-AVSGTHGKTTTTSMISLIM 135

Query: 138 QRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +S L  +  IG    + +   + R+ + +  ++A+A  Y+ S              L  
Sbjct: 136 LKSALDPTIHIG--GELDAIGGNTRIGS-NKYFVAEACEYVESF-------------LKF 179

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           H    + L      N+  DH+DY +  +   NA ++ F  L+P+    +  ADD     +
Sbjct: 180 HPYLAVVL------NIEADHLDYFKDIEHIKNAFLK-FIRLVPENGYVVACADDQNVLSI 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------KDFDFL----FP 305
           +K  H   C +++ G   K        A+   + ++ +  G       KD + +      
Sbjct: 233 LKDVH---CNIITFGLNSK-------NAMWTAEDISFNENGFAAFTVLKDNERITNIQLK 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NAL +   C A+G     + + LE    +  RFE  G  +   ++  DYAH 
Sbjct: 283 VPGIHNISNALASIAACYALGCSIENIKKGLESYTGIHRRFELKGIENN-IKVVDDYAHH 341

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
            + ++  LK  R+    RI  VF
Sbjct: 342 PSEIKATLKAARSGNYPRIWTVF 364


>gi|303232747|ref|ZP_07319432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
 gi|302481233|gb|EFL44308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
          Length = 506

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 29/203 (14%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +A +  N+  DHI++H + +AY  AK ++F + L  ++ AII  DDAY + + +R    G
Sbjct: 190 VAAALLNITPDHIEWHGSMEAYAAAKEQIFAQ-LTADNLAIISRDDAYCRAIYERLCARG 248

Query: 265 CRVLSVG------------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             VL V              +   +H++    +HN+      V          L GE  +
Sbjct: 249 VPVLCVSTGADPQTQQAAYVENNIMHIR----LHNRTYTLCDVRNTK------LQGEHNI 298

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEM 371
            N L A+ L +  G D   + + L +   +  R EFV   +R G + +V+ +  +N+ + 
Sbjct: 299 QNMLTASALALFAGADVQAITDVLLQFSTLEHRLEFV---ARIGDVDFVNDSKATNT-DA 354

Query: 372 ILKNIRTITSGRIIVVFGCGGDR 394
               +R   +G+I+V+ G G D+
Sbjct: 355 AQHALRVYDAGKIVVLLG-GHDK 376


>gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
 gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
          Length = 456

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 160/379 (42%), Gaps = 36/379 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I A  +FVA+ G + DGH ++ +  A+GA A +V    +         +  P 
Sbjct: 28  VGTDSRTIAADQLFVALNGPRFDGHDYLAEVAAKGAVAALVEREVA--------NAPLPQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +TR  L    +        ++ AVTG+SGK+SV   +  I  R+GL+   +     
Sbjct: 80  LLVADTRVALGQLGALNRQAFKGSLAAVTGSSGKTSVKEMLASIL-RAGLNGAVLATRGN 138

Query: 153 ISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +     +N L  P  +   + +  + +   G  HV   A +  L Q ++  I       T
Sbjct: 139 L-----NNDLGAPLTLLELVPEHRAGVIELGANHVGEIAYTVSLTQPQVAII-------T 186

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G  H+      +    AK  + E  LP +  A++  DD       +RA  AG +VLS 
Sbjct: 187 NAGNAHVGEFGGPEKIVEAKGEILEG-LPSDGVAVLNLDDKAFVTWQRRA--AGRKVLSF 243

Query: 271 GYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +             ++   Q  T+            L GE  V NAL A     A+G+
Sbjct: 244 ALRDTRADFHGSDLARDERGCQGFTLRSPIGSARIQLNLLGEHNVANALAACAAAHALGM 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIV 386
               +++ LE L  V GR   V   +  G   +D ++ +N + M    +I    SGR ++
Sbjct: 304 PLVAMVQGLESLQPVKGR--AVAQLAPNGVRVIDDSYNANPVSMCAAVDILAGFSGRTVL 361

Query: 387 VFGCGGD----RDQGKRPI 401
           V G  G+     +QG R +
Sbjct: 362 VLGDMGELGEWAEQGHRDV 380


>gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
 gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
          Length = 456

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 138/336 (41%), Gaps = 43/336 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++++ V  DSR ++   +F+AI G + DGH+FIPQ I  G  A+   S   +++ S    
Sbjct: 26  KEVSSVVIDSRKVEKDCLFIAIRGARVDGHMFIPQTIRDG--ALCALSEKRIENAS---- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P ++V +  + L   A          ++ VTG+ GK+S    +  +         + 
Sbjct: 80  --YPYILVTSCEQALKDIAEHYRKSLNLKVVGVTGSVGKTSTKEMIASVLGE------KY 131

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
               T  +F  +N +  P  I+  +         V  + +  S+ G +  RL  I +   
Sbjct: 132 NVLKTAGNF--NNEIGLPLTIFNIR-----EEHEVAVLELGISNFG-EMERLAKIARPDI 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  H+++ +++     AK  +F  + P  S  I+  DD    + +   H A   
Sbjct: 184 CVITNIGVAHLEHLKSRDGILKAKTEIFLYMNPNGS-IILNGDD----DKLSTVHPAN-- 236

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALV 317
               G Q  F  L      +  Q  +  + G +  F  P         +PGE  V NAL 
Sbjct: 237 ----GIQPVFFGLDDSRDFYADQVESCGLRGTNAVFHTPNSTFSAHISIPGEHMVLNALA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                 A+G++   +   +E L  + GR   + T+S
Sbjct: 293 GIAAGYALGMNDEEIKAGIEALVPLAGRNNLIETDS 328


>gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
 gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
          Length = 468

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 160/382 (41%), Gaps = 59/382 (15%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ VS+DSR + AG +FVA+ G++ DGH FI  A+A+G    +V +A SL   +    
Sbjct: 21  KMVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAKGVRTFLV-AADSLAARAPA-- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N   + V  T + L   A+    K    ++ +TG++GK++    +  I         Q 
Sbjct: 78  ENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTTKEMLATILG-------QT 130

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-----DGI 202
           GP   + +    N L     I L   L  ++ +    V     S   +  RL      G+
Sbjct: 131 GP--GLKTSGNLNNL-----IGLPLMLLRMTGRDRWAVLEMGMSEPGEIDRLAEIAEPGV 183

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH 261
            +I  +FT     H+    + +A   AK  LF+ L  K     +Y ADD     + +   
Sbjct: 184 GIITNAFTA----HLASMGSVEAVAKAKGELFQRL--KTGGVAVYNADDPL---ISRLPT 234

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LP------GEFQV 312
            AG   LS G +G          + ++   T+ +EG  F    P   +P      G+  +
Sbjct: 235 AAGVSRLSFGLRG--------AEVSSEGIKTLGLEGVRFTLRLPDGEIPVKMRAFGQHNI 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM- 371
           YNAL AA    AIG+D   +   LE+      RF        G  + +D ++ +N   + 
Sbjct: 287 YNALAAAAAAHAIGLDHQTIRAGLEEFTPYDKRFH---VEQVGDIVLIDDSYNANPASIA 343

Query: 372 ----ILKNIRTITSGRIIVVFG 389
                LK+IR     R I V G
Sbjct: 344 AALVTLKDIR--QQNRAIAVLG 363


>gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 461

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 151/365 (41%), Gaps = 30/365 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S D+R +  G +F+A+ G+  DGH  I  A+ +GA AI+  SA    D        
Sbjct: 26  VTGISIDTRTLTHGDLFIALKGDNSDGHAHITTALEKGAAAILAHSAEGFTD-------- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             IL+V +T   L   A     +    ++AVTG+ GK++    ++     SGL+      
Sbjct: 78  PRILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGKTTTKEMLRLCLAPSGLTH----- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               +  + +N      P+ LA+ L   +S  ++ + +      L   ++  ++      
Sbjct: 133 ---AAEASYNNHWGV--PLTLAR-LPREASFCISEIGMNHPGEILPLAKM--VQPDVAVI 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVL 268
           T +G  H+ +  +  A    K  +    LPK   AI+  DDA+  E     A  A   + 
Sbjct: 185 TTIGSAHLGHMGSLDAIAKEKASIITA-LPKGGIAIV-PDDAHGTEFFTAEAEKAQAVLW 242

Query: 269 SVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G       HL  +    +     +S++GK F+   P PG     NA+ A   C A+G 
Sbjct: 243 TCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPAPGTHLARNAVAALAACAALGA 302

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384
           D A     L      PG+     T   GG I +    Y  ++ S+   L  +R I + R 
Sbjct: 303 DVAKAANALADFR--PGKGRGALTQIVGGAITLLDESYNASAASIRAALDVLRHIPATRR 360

Query: 385 IVVFG 389
           I V G
Sbjct: 361 IAVLG 365


>gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
 gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
          Length = 455

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 24/221 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R +QAG +FVA+VG   DGH F  QA+ +GA A +V        FS T+    P 
Sbjct: 34  VTTDTRTVQAGELFVALVGETFDGHEFAKQAVEKGAIATIVKKGV----FSKTV--TLPR 87

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T             +    ++A+TG+ GK++    V      + LS F     + 
Sbjct: 88  IEVTDTLAAYQTLGQWWRSQCAIPVVAITGSVGKTTTKELVA-----AALSQF----GTV 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAGSFT 210
             + A  N     + I + K L  L+++   +  VE    GL++  L     K      T
Sbjct: 139 FKTRANYN-----NEIGVPKTLLGLTTEH-DYAVVEMGMRGLEEIALLTQIAKPTVALIT 192

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           N+G  HI    ++ A   AK  L  E LP +  A++  DDA
Sbjct: 193 NVGTAHIGRLGSRAAIAQAKCELLRE-LPTDGTAVLNHDDA 232


>gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
 gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
          Length = 485

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 10/108 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R I+ G IF+A+ G+  DGH +I  A++QGA A +VS           I ++ P 
Sbjct: 58  IATDTRTIKTGDIFLALSGDNFDGHDYIDMAVSQGAIAAIVSRP---------ISTDIPQ 108

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
           LVV++TR  L   AS    +H +  ++A+TG+SGK++    +  I  R
Sbjct: 109 LVVNDTRLALGQLASYRRQQHKDLTVIAITGSSGKTTCKEMLGSIFGR 156


>gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 461

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 163/365 (44%), Gaps = 37/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSATIRSN 89
           +S+DSR ++   +F+ + G K DG  F+  A+ +GA+A++ +   +   L+DF       
Sbjct: 29  ISTDSRKVKKDELFIPLKGEKYDGEDFVKDAMTKGAKAVLTARLDNIEYLRDFPFN---- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V++T + L   AS    K     +AVTG++GK++    + QI  +     +++  
Sbjct: 85  --VIYVNDTLEALHKIASYYRKKFNIPFVAVTGSTGKTTTKDMIAQILSK----KYKVLK 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    +F  +N +  P  I+     +  ++  +  V +  S  G  +   + +K     F
Sbjct: 139 TE--GNF--NNEIGLPLTIF-----NLENTHQIAVVEMGMSGFGEIRRLKNIVKPQVAVF 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  HI+   +++    AK  L E+   +E+  ++ ADD     + K       +   
Sbjct: 190 TNIGVAHIEKLGSRENILKAKTELIED-FKEENVIVLNADDDM---LSKIPLQYSSKYYR 245

Query: 270 VGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G +   I   K C I   +   + T+  +  + +    +PG   VYN+L A  + +  G
Sbjct: 246 YGIKNGEI---KACNIEKGEKGIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAICVGLEFG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
           +D   + E L+     PG+   +    +G    +D A+ +N  S++  L  +R     R 
Sbjct: 303 VDVDDMAEVLKDFQ--PGKMR-LNIIEKGDIKIIDDAYNANPDSMKAALNVLRDFPGKRK 359

Query: 385 IVVFG 389
           I V G
Sbjct: 360 IAVLG 364


>gi|308388622|gb|ADO30942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha710]
          Length = 445

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++  DDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNVDDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+   KD     PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIAT--KDI----PLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -KKNGVVFIDDSKGTN 330


>gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc fallax KCTC 3537]
          Length = 451

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 137/312 (43%), Gaps = 32/312 (10%)

Query: 22  PMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           P Q ++   I+ V+ DSRH++ G +F+A+V  + DGH +I  A+A GA A++V S + L 
Sbjct: 15  PFQGKDSVAISGVAFDSRHVKEGQLFIALVA-ENDGHDYIENALANGAHAVLVDSQHQL- 72

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                 + + P ++VD+T   +         +    ++A+TG++GK++      +I  + 
Sbjct: 73  ------KEDWPAVIVDDTLVAMQKLGQWYRHQVNPKVVAITGSNGKTTTKDMAAEIANQ- 125

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                Q     T  ++  +N +  P  +     LS   S  V  V +     G       
Sbjct: 126 -----QYRTFKTPENY--NNEIGVPMTL-----LSMPESTEVLIVELGMDRPGQLTVLSH 173

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++      T +G  HI++ +T++    AK+ +    L  E   II  D+     + +  
Sbjct: 174 LVEPDIAIITMIGEAHIEFFKTRRNIAKAKLEIING-LKAEGTLIIPNDEPL---LTQEI 229

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-- 318
            +    V + G     ++   +   +N+ Q  I+ +     F  P+ G + + NAL A  
Sbjct: 230 SHIEQHVKTFGTIDADVNATDISVENNQSQFNINQQ----KFAIPMLGRYNIMNALAAIT 285

Query: 319 AGLCIAIGIDSA 330
           AG  + I + +A
Sbjct: 286 AGNLLHIDLKNA 297


>gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
 gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
          Length = 476

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 153/389 (39%), Gaps = 57/389 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +   VS D+R +QAG IFVA+  +  DGH F+ QA+ +GA A +VS           +
Sbjct: 20  EWQATGVSIDTRTLQAGDIFVAL-SDVRDGHDFVQQALDKGAAAALVSH------VPQGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+V + ++ L         +    ++AVTG+ GK+S    +  +    G +   
Sbjct: 73  PEDAPLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHAS 132

Query: 147 I-------GPTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +       G   T++   +D         +     ++ L+     HV++           
Sbjct: 133 VASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVAL----------- 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                      T +   H++  +        K  +FE ++P    AI+ AD   S  +M 
Sbjct: 182 ----------ITTVAAAHLEAFEDITGIAVEKASIFEGVVPN-GVAILNADVETSAILMA 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNAL 316
           +A +   R ++ G  G    L +  A        +  +  +   L+ +  PG     NAL
Sbjct: 231 KAQDCRLRDITFGEHGYDFKLMR--ADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNAL 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDY---AHTSNSLEM 371
            A  +  A+  D AL L  L +     GR   E +  +S   R++VD    ++ +N   M
Sbjct: 289 GAVAVMAALRTDVALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSM 348

Query: 372 -----------ILKNIRTITSGRIIVVFG 389
                      +  +I  ++ GR I   G
Sbjct: 349 AAALEVLAAAKVTNDIGRVSKGRRIAYLG 377


>gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 459

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 153/355 (43%), Gaps = 48/355 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ + KI  +S DSR I+   +++ IVG K DG +FI +    GA A ++   Y +   S
Sbjct: 21  KYSKTKIKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEECENSGAVAFLIDENYKIPK-S 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQI 136
            +I    P + V +T+K L   A     +    I+A+TG++GK+       SV S   ++
Sbjct: 80  ISI----PFVKVSDTKKALQDLARAYRDELDIKIIAITGSNGKTTSKNLIHSVLSEKYKV 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   T+  F+   ++           +  + ++    +S+  +    D 
Sbjct: 136 EKTQGNLNNEIGVPLTLLDFSDKTQI----------GVVEMGTEDFGEISLLTNIAKPDM 185

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKE 255
             +          TN+G  H+   ++++    AK+ + E L  K     IY  DD   K+
Sbjct: 186 AMI----------TNIGDAHLLKLKSREGIAKAKLEILEGL--KADGTFIYNGDDEILKK 233

Query: 256 VMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           V+  ++    + +S G +      ++ K+  + + K     S E +D+    PL G  QV
Sbjct: 234 VLP-SYTIKQKTISYGKEDGVNFKVYPKEFSSTYTK----FSYENEDYK--VPLLGTHQV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           YN  +A  +     +    +   L K+     R E +    R G   +D A+ SN
Sbjct: 287 YNGALAVLIGKLFNLSYEEIDNGLAKVSNNANRNELI---ERNGFDILDDAYKSN 338


>gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 452

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G     +   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|224282666|ref|ZP_03645988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313139824|ref|ZP_07802017.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313132334|gb|EFR49951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 182/428 (42%), Gaps = 54/428 (12%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC 137
           DFSA   +  P L+V++ RK +SL ++  YG+ P++ L V G   T GK++ A F Q + 
Sbjct: 84  DFSA--ETGAPGLIVNDARKAMSLLSAEFYGR-PQDELTVVGITGTKGKTTTAYFTQAV- 139

Query: 138 QRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               L++   G  +  SS           ++ LTTP  +   + +   +  G+ ++ +E 
Sbjct: 140 ----LNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEV 195

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           SS      R+ G+     +F N+  DHI    H T + Y   K ++      + S A++ 
Sbjct: 196 SSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIV-----RNSRALVL 250

Query: 248 ADDAYSKEVMKR-AHNAGCRVLS---------VGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +   +++++ A +AG  V +          G     +      A H+  +  I+ +G
Sbjct: 251 GAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYR--IAADG 308

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLHVVPGRFEFVGTNS 353
            D  +F   L G+F   NA  A  +  A GID    A     +E + +  GR E      
Sbjct: 309 ADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIA-GRMEQFHDPQ 367

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                 VDYAH   S+  +L  +         RI +V G  G++   +R  + + A    
Sbjct: 368 SNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHRI 427

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEK--GNRIEAIRTAI----EMLNKQDVL 462
           D  I T ++  +E    I  E+     +PG       +R  A+  AI       ++ +++
Sbjct: 428 DSFIFTAEDTDTEPFIDICTEMQRYITVPGIASTVISDRPTAVTNAIYDARAHADRFNII 487

Query: 463 VVAGKGHE 470
           ++ GKG E
Sbjct: 488 LIIGKGDE 495


>gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus epidermidis FRI909]
          Length = 451

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 159/366 (43%), Gaps = 36/366 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN VS DSR I  G +F+   G   DGH FI QA+  GA A+     +S ++   +    
Sbjct: 26  INGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENRYSEEIQ 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            PI+ V++T   L   A          ++AVTG++GK++    ++ +      + F++  
Sbjct: 81  GPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----TEFKVKK 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIA-- 206
           T        +N +  P        L+ L     T +S+ E    G   H+++ +  IA  
Sbjct: 137 TQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELLSNIAQP 182

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263
                TN+G  H+    +++    AK  +   L  K +   IY  D+   K  + +  +A
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHVTQVKDA 240

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +++S+G      +   +  + N + +  ++  K+  +  P+ G   + NA +A  +  
Sbjct: 241 --KLISIGLNSDNTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAIAIAIGH 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G++  ++  ++  + +   R E   +++    I   Y  +  S++  +  + ++  GR
Sbjct: 297 ELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTL-SVMKGR 355

Query: 384 IIVVFG 389
            I++  
Sbjct: 356 KILILA 361


>gi|289809140|ref|ZP_06539769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 98

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 9/80 (11%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEM 455
           MG IA + ADI +VTDDNPR+E+P  I  +I+ G+   ++ G       R EA+  AI  
Sbjct: 1   MGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGM---LDAGQVRVMEGRAEAVTNAIMQ 57

Query: 456 LNKQDVLVVAGKGHETVHIV 475
               DV+++AGKGHE   IV
Sbjct: 58  AKDNDVVLIAGKGHEDYQIV 77


>gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
 gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
          Length = 467

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 157/391 (40%), Gaps = 88/391 (22%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N V  D+R +  G +FVAI G + DGH FIP A   GA A V             I ++
Sbjct: 43  VNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAFESGAAAAVSDR---------EIETD 93

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P ++V +TR+ L L  +R Y +  +  ++ VTG+ GK++    +  +           G
Sbjct: 94  RPYILVKDTREAL-LDLARCYRRAFDGLVVGVTGSVGKTTTKEMIAAV--------LSAG 144

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
             +  +    +N +  P  I+       L S      + EA+   +    L  I L+   
Sbjct: 145 YKTLKTQGNLNNAIGLPRTIF------ELDS------TYEAAVIEMGMSALGEISLLTRT 192

Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRA 260
                G  TN+G  H++   T++    AK+ + E + P  +P +I  D+   + V + R 
Sbjct: 193 ALPDIGVITNIGVSHLETLGTRENILKAKLEILEGMAPG-APLVINGDNDLLQTVQLDRP 251

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK----QQVTISVEGKDFDF-----------LFP 305
                 VL+             C I N     + V I   G D +F           L P
Sbjct: 252 ------VLT-------------CGIDNPDADYRAVNIQPRGFDTEFDIVYGENAVHVLLP 292

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVD 361
             GE  V NAL    +    G++ A +   L       G +   G    T +  G + ++
Sbjct: 293 AIGEHNVLNALFGFAVGRFAGMEDAAIATAL-------GTYTPSGMRQNTRTVNGVMLIE 345

Query: 362 --YAHTSNSLEMILKNIRTIT-SGRIIVVFG 389
             Y  + +S+   L  ++ ++ +GR I V G
Sbjct: 346 DCYNASPDSMRAALTTLQQLSCAGRKIAVLG 376


>gi|261414976|ref|YP_003248659.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371432|gb|ACX74177.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325875|gb|ADL25076.1| UDP-N-acetylmuramate--L-alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 460

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 159/405 (39%), Gaps = 48/405 (11%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQR 139
           +S+ I  + P LV    R+   +  + + G+    +  L++ GT GK++  S V  I + 
Sbjct: 74  YSSAIPFDNPELVEARARRIPVIRRAEMLGELMRLKYTLSIAGTHGKTTTTSIVGAIWEE 133

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHR 198
           +GL      PT  +    +                   S   V H   + A S   D+  
Sbjct: 134 AGLD-----PTIIVGGIVKGK----------------CSGAKVGHGDYLIAESDEFDRSF 172

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L  +   A   TN+  DH+D ++   A  +A  + F   +P     I+  DD   ++++ 
Sbjct: 173 LSMMPSSA-IITNIDADHLDTYENIDAIKDAFTQ-FANKIPFYGQVIVCLDDPNVQQILS 230

Query: 259 RAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNA 315
                   V++ G+  Q K+  ++ +  +    Q  I  + K    F   +PG   V NA
Sbjct: 231 HLKKP---VITYGFTRQAKY-RVENLVFVKGYPQFEIVCDVKSLGQFKLQIPGRHNVLNA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  L +  GI   +  + +     V  RFEF+G  + G  ++ DYAH        L  
Sbjct: 287 TAAVALAVEEGISIEVARKAVAAFEGVKRRFEFIGEKN-GVMVFDDYAHHPTEATATLLG 345

Query: 376 IR-TITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432
            R      RIIV F      R + +    G  A    D+ +VTD  P  E P E +   +
Sbjct: 346 FREAFPDKRIIVAFQPHLFTRTRDQHEAFGS-AFSNCDVLLVTDIYPSREKPIEGVTGAM 404

Query: 433 I--------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +        H    FI   N +  I    E+L   DV+V+ G G+
Sbjct: 405 VANSAADRGHRDARFIGDVNNL--IPVCKELLKPNDVIVLMGAGN 447


>gi|296117539|ref|ZP_06836123.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969270|gb|EFG82511.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 477

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 121/294 (41%), Gaps = 58/294 (19%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPS-----PIYLAKA 173
           + GT GK+S  S V    Q +G   SF IG         Q NR  T +      I++A+A
Sbjct: 117 LAGTHGKTSTTSMVVSALQAAGKDPSFAIG--------GQLNRAGTNAHHGKDDIFVAEA 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                         + S   L ++  D I +I    TN+  DH+DY  + +AYF      
Sbjct: 169 --------------DESDASLLRYDPD-IAVI----TNIEPDHLDYFGSAEAYFQVFDDF 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----------GKFIHLKKV 282
            E + P  +  I+  +D ++ E+ +RA  +G +V+  G             G  I  ++V
Sbjct: 210 AERIKPNGT-LIVCVEDEHAAELGRRAVESGVQVVGYGSSKALAQHPDITPGAEILTEEV 268

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKL 339
                   VT+ +   +  +   +PG   V N   AL+A  L    G  +  + E L   
Sbjct: 269 G--RETTAVTVKLPSGEVSYDLQIPGHHMVLNSAAALIAGELA---GAKAQALAEGLSDF 323

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVF 388
             V  RFE+ GT     R+Y DYAH    +  +L   R   +     GR++V F
Sbjct: 324 TGVRRRFEYRGTAGDNIRVYDDYAHHPTEVAAVLGAAREKVTAEGLGGRVVVCF 377


>gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M13399]
 gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240013]
          Length = 445

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC AIG+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
 gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
          Length = 475

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 162/379 (42%), Gaps = 44/379 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVAI G++ D H F+P   A+   A++++   + QD++       P 
Sbjct: 34  VSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAVLITR--TPQDWT------VPA 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     K    ++AVTG++GK++V   +  I   +  +  ++   +T
Sbjct: 86  LKVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL---AT 142

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  +N +  P  ++   A   L+   V  + +      L+  ++   +       N 
Sbjct: 143 AGNF--NNDIGLPLTLFRLHAAHQLA---VVELGMNHPGETLELAKI--AEPTVAVVNNA 195

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKRAHNA 263
            R+H ++  T +A       +   L P E  A+  ADDAY+           +M  A N+
Sbjct: 196 QREHQEFMATVEAVALEHASVIHALTP-EGVAVFPADDAYASIWRVAATGSRIMDFALNS 254

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             R+     +G F     V +I   + Q+ ++++         + G+   +NAL A    
Sbjct: 255 AERITEAAVKGTFA--GNVLSIDTPEGQIEVTLQ---------VLGDHNAHNALAATSAA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           +A G+    +   LE    V GR +     +GT +    I   Y    +S+   +  + +
Sbjct: 304 LAAGVSLDAIKRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLAS 363

Query: 379 ITSGRIIVVFGCGGDRDQG 397
             + R++V+   G   D G
Sbjct: 364 RAAPRVLVMGDMGEVGDNG 382


>gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 452

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G     +   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|225077400|ref|ZP_03720599.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
 gi|224951284|gb|EEG32493.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
          Length = 445

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQDDED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQN------IPLQGLHNAANVMAAVALCEAVGLQREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 481

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 167/387 (43%), Gaps = 39/387 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   G 
Sbjct: 31  KNIAEMVKGTLTNP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQAFEAGV 89

Query: 69  EAIVVSSAYSLQDFSA-TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            A+       L D S      N  +++VD+T   L   A     +    ++ VTG++GK+
Sbjct: 90  AAV-------LWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKT 142

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  +      + +++  T    +F  +N +  P  +     L+   +  +  + +
Sbjct: 143 TTKDMIHAVLG----TQYRVHKTG--GNF--NNHIGLPLTV-----LAMPENTEIAVLEM 189

Query: 188 EASSHGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             S+ G     +D +  +A       TN+G  H+    +++    AK+ +   L  KE  
Sbjct: 190 GMSAKG----EIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDG 243

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +IY  D   + +++ A++   +    G    +  L+ V    +++    +++G +  F 
Sbjct: 244 VLIYIGD---EPLLQNAYSCQTKTYGTGAHNDY-QLQDVS--QSEEGTHFTIKGIENTFF 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NA+ A       GI      + L  L V   R E + T+S    I   Y 
Sbjct: 298 IPILGKHNVMNAMAAIAAGAYFGITPEGAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 357

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFG 389
            +  S++  ++   ++   G+ ++V G
Sbjct: 358 ASPTSMKAAIQLTESLEGYGKKMLVLG 384


>gi|289804639|ref|ZP_06535268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 132

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 51/93 (54%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              P++ +    + LS  A R Y +  EN+  V
Sbjct: 80  HGVPVVYLSQLNERLSALAGRFYHEPSENMRLV 112


>gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
          Length = 458

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 133/326 (40%), Gaps = 40/326 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V++D+R +  G +FVA+ G   DGH F  QA+  GA A++V+   +L         +
Sbjct: 24  VTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQALEGGAGALLVNRRLAL---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR  L    + +  + P  ++A+TG+SGK+SV      I    G   +  G 
Sbjct: 75  VPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEMSAAILGLCGNVLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                    +N +  P  +   +     +    G  HV   A S  L +         + 
Sbjct: 135 L--------NNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH-------SA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNA 263
              NL   H++   +      AK  +F   LP +  AI+  D    +++   + ++    
Sbjct: 180 LVNNLAAAHLEGFGSLSGVARAKGEIFAG-LPPQGTAIVNVDSNDWESWQHALTEQ---- 234

Query: 264 GCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             RV     Q   G   +   V +       T+       + L PLPG   + NAL AA 
Sbjct: 235 --RVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLLPLPGRHNIANALAAAA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346
           L +++G     V + L  L  VPGR 
Sbjct: 293 LTMSVGASLTQVQQGLAGLQAVPGRL 318


>gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Kitasatospora setae KM-6054]
          Length = 467

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 150/355 (42%), Gaps = 40/355 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I+ G +FV + G + DGH +  +A+A GA A++           AT     P 
Sbjct: 30  VVTDNRRIEPGGLFVCVRGERVDGHDYAAKAVADGAVAVL-----------ATRPVGVPA 78

Query: 93  LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++VD+    L  L  + +       I+ +TG+SGK+S    + Q+    G + F  G   
Sbjct: 79  ILVDDVVVALGRLARAVVARAADVRIVGLTGSSGKTSTKDLIAQVLAGHGETVFPAG--- 135

Query: 152 TISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSF 209
                + +N +  P + + +A +  +L       V    + H  D   L GI     G  
Sbjct: 136 -----SNNNEIGHPLTALRIAPSTRHL-------VMEMGARHKGDIEYLTGITPPTVGLV 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+    +++    AK  + E L P E  A++ ADD   + +  R      RV+ 
Sbjct: 184 LNIGTAHLGEFGSREGIAEAKGEMVEALSP-EGVAVLNADDPLVRAMSSRTR---ARVVL 239

Query: 270 VGYQGKFIHLKKV---CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G +    H++          + Q T+S           L GE  V NAL AA + + +G
Sbjct: 240 FG-ESPDAHVRATDVRLDATGRPQFTLSTPAGSAPVRLRLYGEHHVSNALAAAAVAVELG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379
           +    V E L +   +  R+     +   G   V+ A+ +N  S+   L+ + T+
Sbjct: 299 MPVDRVAEALSEAGAL-SRWRMEVVDRADGLTVVNDAYNANPESMRAALRALATM 352


>gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
 gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
          Length = 452

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 41/326 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++V+    +         +
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVNRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            TP   Y    L      G  H    A +  L +             
Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  +F  L P+   AI+ AD+           S++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346
           L +++G     +   L  L  VPGR 
Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
 gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
          Length = 449

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 71/384 (18%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+ + GN+ DGH ++  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIVLQGNR-DGHDYVLDAIDKGAAAVIVSKQVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS------- 143
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L        
Sbjct: 75  KIILVDDCFETLQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQYDSLVFASRGNF 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + ++G    ++S A D    T   I+           G+ H        G  +  +  +K
Sbjct: 135 NNRLGLLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMKR- 259
                 TN+   H+++  + +    AK  +FE    K   A+I AD + Y+K   ++K  
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFEN-FSKNDIAVINADINCYNKIVSILKNL 233

Query: 260 ----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308
                     +HN   +++     G+ +HLK              +  K  +   P +P 
Sbjct: 234 SINRVYNFGISHNTPAQLVLYENLGEQVHLK------------YKINNKSLEITIPFIPR 281

Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            F + Y A++   L I I G D  +   HL  +    GR E +  N +  RI  DY + S
Sbjct: 282 HFAENYTAIL---LIIDILGKDIEIAANHLANIPPNKGRGEII--NIQNSRIICDYYNAS 336

Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389
             S++  L+ ++ + +     + G
Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360


>gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 456

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 159/383 (41%), Gaps = 64/383 (16%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    ++    DSR +++G +FV + G + DGH FIP A AQGA A +          S
Sbjct: 20  QFANVSLSNAEFDSRLVKSGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------S 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140
               +    ++VD+        A     K   ++LAVTG++GK++    + Q+   S   
Sbjct: 69  ERPVAGGAYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKT 128

Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  + +IG   T+    +D                 +   G  H+         D 
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167

Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD     +
Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-KKDGLLIVPAD-----K 221

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEF 310
           ++     A C+++  G     I L ++     +++ ++S    D +FL      P+ G++
Sbjct: 222 IVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSF---DCNFLEQRIDLPVTGKY 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA++AA   +  G+    + +   +L +   R E+    + G  I  D Y     ++
Sbjct: 274 NATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAM 332

Query: 370 EMILKNIRTITS---GRIIVVFG 389
            +IL+   TI +   GR + V  
Sbjct: 333 RLILETFSTIPANPGGRKLAVLA 355


>gi|309779050|ref|ZP_07673817.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
 gi|308922115|gb|EFP67745.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
          Length = 855

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 161/393 (40%), Gaps = 46/393 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA    G+ P  ++AV+GT+GK++    +  +   SGL   ++G T T   + Q  R+
Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHLLASSGL---RMGMTGTDGVYIQGQRI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219
            T        A + L    V     E +  GL +  L   +      TN+G  DH+  +Y
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLNY 574

Query: 220 HQTQQAYFNAKMRLFEELLPK-------ESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271
             T +     K  + + + P+         P +    D     V   AH+     ++   
Sbjct: 575 ISTVEDLAVLKSVIVQNVAPRGMAVLNAADPMVARMADGCPGSVTFFAHDPSLPTMARHR 634

Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIG 326
            QGK   F+   ++       +  I++     D      G   FQV NA+ +     A+G
Sbjct: 635 AQGKRVVFVDGPEIVVAEGANETRIALA----DIPLTRNGTIGFQVENAMSSIAAAWALG 690

Query: 327 IDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           ID  ++   L          PGRF     + +G  +  DY H  ++++ +   + T+ + 
Sbjct: 691 IDWTVIRRGLATFVNDAATAPGRFNLF--DYKGATLIADYGHNPDAIQALCNAVATMPAQ 748

Query: 383 -RIIVVFGCGGDRDQGKRP---IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R++V+ G G  RD+  R    I+G +     D+ +  D   R     ++ A +  G+ G
Sbjct: 749 RRMVVISGAGDRRDEDIRKQTQILGGV---FDDVVLYEDQCQRGRADGEVLALLREGLQG 805

Query: 439 FIEKGNRIEAIR-------TAIEMLNKQDVLVV 464
              + +R+E IR       TA+  L   D+ ++
Sbjct: 806 -ASRTSRVEEIRGEFLAIDTALGRLQPGDLCLI 837


>gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
 gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
          Length = 453

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V            +
Sbjct: 21  DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQR---------EL 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   + 
Sbjct: 72  EADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131

Query: 147 IG--------PTSTISSFAQD 159
            G        P + + S A+D
Sbjct: 132 QGNFNNDIGVPLTLLRSTAED 152


>gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
 gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
          Length = 453

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V            +
Sbjct: 21  DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQR---------EL 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   + 
Sbjct: 72  EADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131

Query: 147 IG--------PTSTISSFAQD 159
            G        P + + S A+D
Sbjct: 132 QGNFNNDIGVPLTLLRSTAED 152


>gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 453

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 158/373 (42%), Gaps = 43/373 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           ++I  VS+D+R I+ G +F+A+ G   +G+ ++  A  +GA+ AIV      L +    +
Sbjct: 24  KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  ++ V NT + L   A     K    ++ +TG++GK+S    V  +        ++
Sbjct: 80  KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T    +F  +N +  P        L  L       V++ E    GL Q     IK +
Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178

Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           A       G  TN+G  HI+  +T++    AKM +      K +  ++  +D +    + 
Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-AAFFDKNNTLVVCGNDDF----LG 233

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +A  +++  G    F I  K +       + T+    K+ +F   +PGE  + N ++
Sbjct: 234 ALPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
              +   +G+    +   L+ +     R E +  +  G  I  D Y  +  +++  +  +
Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351

Query: 377 RTITSGRIIVVFG 389
           + I   R I V G
Sbjct: 352 KNIEGKRRIAVLG 364


>gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           parahaemolyticus 10329]
          Length = 454

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R I  G +FVA+VG + D H F  QA   GA A++V     +         N
Sbjct: 24  IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQASEAGAGALLVEKRLDV---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P +VV +T+  L   AS ++       +A+TG+ GK++V   V  I Q+ G   F  G
Sbjct: 75  APQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAG 133


>gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 466

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V          
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERP------- 83

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             I +    LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G  H      +  + Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     +     AK  ++  +LP +  AII   D ++ E+ + A
Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIIPQQDDFTAEIREAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +++S G  G     +      +      + +G  F  L P  GE  V NA  A  
Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+G+    +++ L +     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGVSLEDIVKGLAQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350


>gi|307244134|ref|ZP_07526252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492505|gb|EFM64540.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 454

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 42/273 (15%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V +IC+ +GL ++ +G     +  A +     P  + L   LS    + V     E S
Sbjct: 126 SIVGEICKEAGLDTYVVGNIGNPAISAVEE--AQPGAV-LVIELSSFQLEAVYDFRPEVS 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +                   NL  DH++ H T + Y  AK  +F +  P ES  ++  DD
Sbjct: 183 T-----------------VLNLTEDHMNRHHTMENYAKAKANIFAKQTP-ESVCVLNYDD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK---FIHL---KKVCAIHNKQQVTISVEGKDFDFLF 304
             ++++    +    R +    Q +    I+L   K + A+ + ++V I V  +D     
Sbjct: 225 PITRDM---GNTCQARPVYFSRQSRPEAGIYLDDNKNIIAVKDGREVEI-VNAEDLS--- 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   + N++ A GLC+  GID  ++ + L     V  R E+V  N+  G +YV+ + 
Sbjct: 278 -LPGGHNLENSMAAIGLCLHFGIDKEIIKKVLTTFKAVEHRLEYV--NTVNGVVYVNDSK 334

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            +N        I+ + S +  ++   GG  D+G
Sbjct: 335 GTNP----DSTIKAVQSYKTPIILIAGG-YDKG 362


>gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
 gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
          Length = 447

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 157/377 (41%), Gaps = 53/377 (14%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E  I+ VS DSR+I  G +F+   G   DGH ++  AI +GA A +       Q  + 
Sbjct: 23  YEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAIDKGAYAAL------WQRDAG 76

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QIC 137
            +  + P++VV++T   L   +     +    ++AVTG++GK++    ++       ++ 
Sbjct: 77  EVPRDLPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSNGKTTTKDMIEAVLSPHFKVK 136

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +  G  + +IG   T+    +D  ++          +  +   G   +S+   SH  + H
Sbjct: 137 KTQGNYNNEIGLPLTLCQLDEDTEIS----------ILEMGMSGFGEISL--LSHIAEPH 184

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                     + TN+G  H+    +++    AK  + + L     P     D+A  K ++
Sbjct: 185 --------IAAITNIGESHMRDLGSREGIAKAKYEITDGLT---GPLFYDGDEALLKPLV 233

Query: 258 ---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              K AH  G    +  Y  + I           Q   +  +  D  ++ P  G     N
Sbjct: 234 KDNKDAHRIGFNEDNEYYIHEMI----------MQDKHLQFKVNDDTYIVPTLGSHNARN 283

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMI 372
           A +A  +   +G+    +   L++L +   R E +    + G + ++ A+ ++  S++  
Sbjct: 284 ATIAIAIGSYLGLSPEQINHSLQQLKLTGMRMEQL--EGKDGALLINDAYNASPTSMKAA 341

Query: 373 LKNIRTITSGRIIVVFG 389
           +  +  + S   I+VFG
Sbjct: 342 IDTVSQMDSEVKIIVFG 358


>gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica W22703]
          Length = 454

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 167/391 (42%), Gaps = 55/391 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV+ D+R +  G +FVA+ G + DGH F   A+A GA A++VS    ++         
Sbjct: 25  ITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKHLLVE--------- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G 
Sbjct: 76  APQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTSG- 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    P+ L   L          + + A+  G   +  D  +  +   
Sbjct: 135 -----NFNNDIGV----PLTL---LRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL   H++   +      AK  +F   LP    AII AD        +  HN   RV  
Sbjct: 183 NNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHNK--RVWR 239

Query: 270 VGYQGK----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               G            I  K      +    T+++E        PLPG   + NAL AA
Sbjct: 240 FSPHGAEDIDFFASDVRITPKTTYFTLHSPLGTVAIE-------LPLPGRHNIANALAAA 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377
            L +++G   A V E L +L  VPGR   +      G++ +D ++ +N  S+    + + 
Sbjct: 293 ALAMSVGASLAAVREGLTQLQAVPGRLFPI--ELAAGKLLLDDSYNANVGSMTAAAQVLA 350

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +   R++VV    GD  +     +G+ A+D
Sbjct: 351 EMPGYRVMVV----GDMGE-----LGETAVD 372


>gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 505

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 151/387 (39%), Gaps = 74/387 (19%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQDFSA 84
           DSR I  G +FVA+ G   DGH F   AI +GA            A+++     ++  ++
Sbjct: 34  DSRKITEGGLFVALPGANVDGHDFAQSAIDRGAVGALVARDVGVPAVILPPVEQIEGDNS 93

Query: 85  TIRSNTPI----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            + +N P      VV    K  +  A+ L  KH   I  +TG++GK+S    +  +   +
Sbjct: 94  DLAANDPDGSARAVVAGMAKLAAHVATTLVDKHQLRITGITGSAGKTSTKDLIASVLADA 153

Query: 141 GLS-----SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           G +     SF  +IG   T+    +D              ++ +S++G+ H++       
Sbjct: 154 GETVAPPGSFNNEIGLPYTVLRCTEDTDFL----------VAEMSARGIGHIAQ------ 197

Query: 194 LDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                   +  +A    G   N+G  H+    +++    AK  L E  LP +  AI+ AD
Sbjct: 198 --------LTHVAPPQIGVVLNVGSAHLGEFGSRENIAQAKGELVEA-LPADGIAILNAD 248

Query: 250 DAYSKEVMKRAHNAGCRVL--------SVGYQGKFIHLKKVC----AIHNKQQVTISVEG 297
           D     +  R      RV+        +  Y  + I L  V      +H+       V  
Sbjct: 249 DELVAGMASRTK---ARVVCFSTDPRSNAEYVAEGITLDDVARASFTMHSPNSEPQQVRL 305

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K F       G  QV NAL  A + +  G+D+A V   L   H +      V T + G  
Sbjct: 306 KVF-------GAHQVSNALATAAVGMEAGMDAATVARALSNAHSLSVNRMDVNTRADGVT 358

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGR 383
           +  D Y    +S+   +  +    +GR
Sbjct: 359 VINDAYNANPDSMRAGIAALGYTAAGR 385


>gi|240118594|ref|ZP_04732656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID1]
 gi|268604305|ref|ZP_06138472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
 gi|268588436|gb|EEZ53112.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
          Length = 445

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            +F      +   ++ ADD + +  MKRA     +  S+ ++  F   +    +    + 
Sbjct: 209 EIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            IS +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|256845956|ref|ZP_05551414.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
 gi|256719515|gb|EEU33070.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
          Length = 607

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 167/379 (44%), Gaps = 54/379 (14%)

Query: 2   KLQDLIY---KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK 53
           K + LIY   KDF E++     N+L IF    ++ +I  V  DSR +  G +F AI    
Sbjct: 164 KNETLIYENLKDFSEILKREKLNEL-IFEEFLKKVQIKNVVMDSRKVIEGSLFFAI---- 218

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            +G+ ++   + +GA ++V++    ++D          ++ V +T   +   A++   K 
Sbjct: 219 NNGNSYVKDVLDKGA-SLVIADNTDIKD--------KRVIKVTDTIATMQDLATKYRNKL 269

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++    V        L S +     T  ++  +N +  P  +     
Sbjct: 270 DIQVVGITGSNGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL----- 316

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMR 232
           L+    +    + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  
Sbjct: 317 LNVTDEEKFVVLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTE 375

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L  E + KE+   +  DD Y              V  VG+ G   H  +     NK    
Sbjct: 376 LL-EFVDKEN-TFVCGDDEYL---------GKLDVNKVGFNGNNTHKIESYDFSNKGSKF 424

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I ++GK+++    L G+  + N  +A  L   IG+    + + L+++ +   RF+ +   
Sbjct: 425 I-LDGKEYE--MSLLGKHNISNTSIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI- 480

Query: 353 SRGGRIYVDYAHTSNSLEM 371
             G  IY++ A+ ++ + M
Sbjct: 481 --GNDIYINDAYNASPMSM 497


>gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51]
 gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 480

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 57/328 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++AG IF A+VG + DGH +I  A  +GA  ++             +     ++ V
Sbjct: 20  DSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGKALIRV 79

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++    +   A     +    ++A+TG++GK++    V  +        +++        
Sbjct: 80  ESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLS----EKYRVHKNME--- 132

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIA----GSFT 210
             Q+N L  P        ++ L++   T V + E    GL Q  +  +  IA    G  T
Sbjct: 133 -NQNNELGLP--------MTILNAPENTEVLILEMGMRGLGQ--IAFLCAIARPDIGVIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H++   +QQA   AK  L  E LP+   A++  +D +S   +K A     +    
Sbjct: 182 NIGTTHMELLGSQQAIAQAKWELI-EALPETGSAVLNGEDEWS---VKLAGQDSHQTFFY 237

Query: 271 GYQGKF---------------------IHLKKV-----CAIHNKQQVTISVEGKDFDFL- 303
           G +G+F                     +  ++V     CA+    +V   V  K    + 
Sbjct: 238 GLEGRFHEPDLRGMNLTPFGILGTRFQVGHRQVGHGDRCAVPFA-EVAAEVGQKTCPHVS 296

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            PLPGE  V +AL A  L + I +D +L
Sbjct: 297 LPLPGEHNVLDALAA--LSVGILLDVSL 322


>gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 452

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V  DSR ++ G +F  IVG K DGH F  QA+  GA A+V S+   L         +
Sbjct: 24  VGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQAVENGACAVVASAPLDL---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            P+L+V +T   L   A     K    ++ V+G++GK++V   + Q+   +G ++
Sbjct: 75  VPVLLVRDTTSALGRLARAWREKTRARVIGVSGSAGKTTVKEMLAQVLSAAGRTA 129


>gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
 gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
          Length = 444

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 167/364 (45%), Gaps = 41/364 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR I+   +F+A+ G + DGH ++ +A   GA A VV            I ++ P+
Sbjct: 24  ISVDSRSIKPHELFIALRGKQYDGHHYVGEAQQHGAAAAVVEE---------VIETDLPL 74

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++TRK L   A     +    I+ +TG+ GK++    ++ I         ++GP   
Sbjct: 75  VLVEDTRKALGELAKHHRRQFSIPIIGLTGSCGKTTTREMIRSILA-------EMGP--V 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
           +++F   N     + I L   L +L+++    V    ++H  +   L  I +      TN
Sbjct: 126 LANFKNFN-----NAIGLPLTLLHLTAEHRYAVIEMGANHAGEIDYLTHITQPDIALITN 180

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H+    +      AK  +F  L  K   AI+ A D + ++++++A +A  R ++ G
Sbjct: 181 IGPAHLQGFGSILRVAEAKAEIFSGLAQK-GVAILNAADNH-RDILEKA-SAQYRRVNFG 237

Query: 272 ------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                 +  + I L K      +    +   G++      L G+  V NAL AA +   +
Sbjct: 238 LTQNCDFYARQIQLDKT----GRPTFLLVSSGEEIIIRLNLSGQHHVMNALAAAAVARQV 293

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383
           G++ +++   LEK+  + GR   +   ++ G   +D ++ +N  S+   LK +      R
Sbjct: 294 GVEFSVIQSGLEKMQPLSGR--VINRTTKTGATLIDDSYNANPSSVAAALKLLAHYKGLR 351

Query: 384 IIVV 387
           I+V+
Sbjct: 352 ILVL 355


>gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
 gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
          Length = 468

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 142/346 (41%), Gaps = 30/346 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+ I  + +DSR  +AG  F+A+ G + D H F+ Q + +G +  +V     L       
Sbjct: 34  EQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNKGCQVAIVERPLDLDMMQ--- 90

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 LVV +TR+ L    +    ++P+  ++A+TG+SGK++    +  I  R      
Sbjct: 91  ------LVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSR------ 138

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            + PT  ++    +N L  P  +     L   +      + + AS  G   +    ++  
Sbjct: 139 -LAPT-LVTRGNLNNDLGVPMML-----LELTAEHQYAVMELGASHQGEIDYTSQLVQPQ 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     ++    AK  ++   + K+  ++I A D ++  +         
Sbjct: 192 VAGIINVGTAHLGEFGGREGICRAKSEIYAH-IAKDGTSVIPAADDFTDAIRHAVQT--T 248

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +VLS G +G  I+  ++  +    Q  +       +   P  G   V NA  A    +AI
Sbjct: 249 QVLSFG-EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALAI 307

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           GI    ++  LE      GR  F+   S    +++D  + +N   M
Sbjct: 308 GISLDDIVIGLELAQGAKGRLNFI---SHKQHLFIDDTYNANPTSM 350


>gi|240128807|ref|ZP_04741468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268687189|ref|ZP_06154051.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268627473|gb|EEZ59873.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 445

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            +F      +   ++ ADD + +  MKRA     +  S+ ++  F   +    +    + 
Sbjct: 209 EIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            IS +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
 gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
          Length = 466

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 155/378 (41%), Gaps = 36/378 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + V SDSR ++ G +FVA+ G + D H FI   +A+GA A++VS           + +
Sbjct: 28  EFSRVHSDSRSVEPGDLFVALKGERFDAHDFIADVVARGAAAVLVSR---------EVDA 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P +V  +TR  L    +    +     +AVTG++GK++V   +  I   +      +G
Sbjct: 79  GVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAA------VG 132

Query: 149 PTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLI 205
               +++    +N +  P  +   +A   L+    G+ H        G+ Q  +  I   
Sbjct: 133 EEQRLATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVAVI--- 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS----KEVMKRAH 261
               TN  R+H ++  + +A  +        L    +   +Y  DA S      V + A 
Sbjct: 190 ----TNAQREHQEFMVSVEAVAHEHAAAIAAL--PANGVAVYPLDAESGGAYAPVWRNAA 243

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A  R LS G   +      V  +   Q + +   G  FD    L GE  V NAL A   
Sbjct: 244 GA-RRALSFGTSQRADVHATVTLVDGAQVMQVRAPGHAFDVRLALLGEHNVRNALAAIAC 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379
            +A G+    +   L     V GR +     + GG + +D  + +N  S+   +  +   
Sbjct: 303 ALAAGVHVPAIQRGLAGFQAVKGRLQV--KYTPGGTVVIDDTYNANPDSMRAAIDVLAGF 360

Query: 380 TSGRIIVVFGCGGDRDQG 397
            + R++V+   G   DQG
Sbjct: 361 AAPRVLVLGDMGEVGDQG 378


>gi|59801871|ref|YP_208583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|293398488|ref|ZP_06642666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
 gi|62900451|sp|Q5F6L6|MURD_NEIG1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|59718766|gb|AAW90171.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610959|gb|EFF40056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
          Length = 445

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            +F      +   ++ ADD + +  MKRA     +  S+ ++  F   +    +    + 
Sbjct: 209 EIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            IS +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
 gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
          Length = 492

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 128/286 (44%), Gaps = 40/286 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I AVTGT+GKS+V +F  QI Q++G+ +F IG             L TP      +   
Sbjct: 128 KIAAVTGTNGKSTVTTFTGQILQQAGVRTF-IG-----------GNLGTPFSDAACECFK 175

Query: 176 YLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFT-------NLGRDHIDYHQTQQAYF 227
           + S      V+V E SS+ L+         + GSF+       NL  DH++ H++ + Y 
Sbjct: 176 FPSDDPPYQVTVLEVSSYQLE---------LPGSFSPSVGVILNLSPDHLERHKSMENYG 226

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K RLFE +   +   I +AD+   K   K  +N+G    +  + G    ++       
Sbjct: 227 ETKCRLFERMDSSKLSIIPHADEFLRKVAYK--YNSGS---TKAWLGALPGIQLDSQARR 281

Query: 288 KQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHVVP 343
              V  + + +   +L  L   G     NA  A+ L +A  +G+D   +   + +L  +P
Sbjct: 282 AVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLTPLP 341

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            R + VG + + G ++++ +  +N ++     I+ +   + +++ G
Sbjct: 342 HRMQIVGQDKK-GVLWINDSKATN-VDAAYTGIKGLADRKAVILLG 385


>gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
          Length = 450

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 12/115 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NE+  +S+ I+ G +F+A+ GNK DGH +I  AI QGA A++VS    + D         
Sbjct: 23  NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIAD-------KN 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
            I++VD+  K L   A  LY +   N   +A+TG+ GK+S    ++ + Q   L+
Sbjct: 75  KIILVDDCLKALEQLA--LYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALT 127


>gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
 gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
          Length = 453

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V            +
Sbjct: 21  DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQALTGGAVALLVQR---------EL 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   + 
Sbjct: 72  EADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131

Query: 147 IG--------PTSTISSFAQD 159
            G        P + + S A+D
Sbjct: 132 QGNFNNDIGVPLTLLRSTAED 152


>gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
 gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
          Length = 450

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 12/115 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NE+  +S+ I+ G +F+A+ GNK DGH +I  AI QGA A++VS    + D         
Sbjct: 23  NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIAD-------KN 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
            I++VD+  K L   A  LY +   N   +A+TG+ GK+S    ++ + Q   L+
Sbjct: 75  KIILVDDCLKALEQLA--LYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALT 127


>gi|310287126|ref|YP_003938384.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
 gi|309251062|gb|ADO52810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
          Length = 543

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 182/428 (42%), Gaps = 54/428 (12%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC 137
           DFSA   +  P L+V++ RK +SL ++  YG+ P++ L V G   T GK++ A F Q + 
Sbjct: 108 DFSA--ETGAPGLIVNDARKAMSLLSAEFYGR-PQDELTVVGITGTKGKTTTAYFTQAV- 163

Query: 138 QRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               L++   G  +  SS           ++ LTTP  +   + +   +  G+ ++ +E 
Sbjct: 164 ----LNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEV 219

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           SS      R+ G+     +F N+  DHI    H T + Y   K ++      + S A++ 
Sbjct: 220 SSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIV-----RNSHALVL 274

Query: 248 ADDAYSKEVMKR-AHNAGCRVLS---------VGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +   +++++ A +AG  V +          G     +      A H+  +  I+ +G
Sbjct: 275 GAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYR--IAADG 332

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLHVVPGRFEFVGTNS 353
            D  +F   L G+F   NA  A  +  A GID    A     +E + +  GR E      
Sbjct: 333 ADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIA-GRMEQFHDPQ 391

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                 VDYAH   S+  +L  +         RI +V G  G++   +R  + + A    
Sbjct: 392 SNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHRI 451

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEK--GNRIEAIRTAI----EMLNKQDVL 462
           D  I T ++  +E    I  E+     +PG       +R  A+  AI       ++ +++
Sbjct: 452 DSFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARAHADRFNII 511

Query: 463 VVAGKGHE 470
           ++ GKG E
Sbjct: 512 LIIGKGDE 519


>gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
 gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
          Length = 427

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 165/385 (42%), Gaps = 55/385 (14%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +FVA+ G + DGH F   AIA GA A++VS    ++          P LVV
Sbjct: 4   DTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLLVE---------APQLVV 54

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G      +
Sbjct: 55  KDTRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAG------N 108

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F  D  +    P+ L   L          + + A+  G   +  D  +  +    NL   
Sbjct: 109 FNNDIGV----PLTL---LRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAA 161

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H++   +      AK  +F  L P    AII AD        +  HN   RV      G 
Sbjct: 162 HLEGFGSLAGVAQAKGEIFAGL-PANGTAIINADSNDWPHWQETLHNK--RVWRFSPHGA 218

Query: 276 ----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                      I  K      +    T+++E        PLPG   + NAL AA L +++
Sbjct: 219 EDIDFFASDVRITPKTTYFTLHSPLGTVAIE-------LPLPGRHNIANALAAAALAMSV 271

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383
           G   A V + L +L  VPGR   +  ++  G++ +D ++ +N  S+    + +  +   R
Sbjct: 272 GASLAAVRQGLTQLQAVPGRLFPIELSA--GKLLLDDSYNANVGSMTAAAQVLAEMPGYR 329

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALD 408
           ++VV    GD  +     +G+ A+D
Sbjct: 330 VMVV----GDMGE-----LGETAVD 345


>gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens str. 13]
 gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium
           perfringens str. 13]
          Length = 453

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 157/373 (42%), Gaps = 43/373 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           ++I  VS+D+R I+ G +F+A+ G   +G+ ++  A  +GA+ AIV      L +    +
Sbjct: 24  KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  ++ V NT + L   A     K    ++ +TG++GK+S    V  +        ++
Sbjct: 80  KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T    +F  +N +  P        L  L       V++ E    GL Q     IK +
Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178

Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           A       G  TN+G  HI+  +T++    AKM +      K +  ++  +D +    + 
Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               A  +++  G    F I  K +       + T+    K+ +F   +PGE  + N ++
Sbjct: 234 ALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
              +   +G+    +   L+ +     R E +  +  G  I  D Y  +  +++  +  +
Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351

Query: 377 RTITSGRIIVVFG 389
           + I   R I V G
Sbjct: 352 KNIEGKRRIAVLG 364


>gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
          Length = 453

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 157/373 (42%), Gaps = 43/373 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           ++I  VS+D+R I+ G +F+A+ G   +G+ ++  A  +GA+ AIV      L +    +
Sbjct: 24  KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  ++ V NT + L   A     K    ++ +TG++GK+S    V  +        ++
Sbjct: 80  KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T    +F  +N +  P        L  L       V++ E    GL Q     IK +
Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178

Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           A       G  TN+G  HI+  +T++    AKM +      K +  ++  +D +    + 
Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               A  +++  G    F I  K +       + T+    K+ +F   +PGE  + N ++
Sbjct: 234 ALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
              +   +G+    +   L+ +     R E +  +  G  I  D Y  +  +++  +  +
Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351

Query: 377 RTITSGRIIVVFG 389
           + I   R I V G
Sbjct: 352 KNIEGKRRIAVLG 364


>gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
 gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
          Length = 488

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 143/333 (42%), Gaps = 41/333 (12%)

Query: 24  QWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           QW +R+   +  V +DSR ++AG +FV +VG + DGH F+  A   GA+A +V++  +  
Sbjct: 46  QWVQRQSEPLGPVCTDSRRLEAGALFVPLVGEQFDGHAFLADAARCGAQAALVAAGSNAS 105

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                +    P    D T  +  L AS    +    ++AVTG++GK++    +     R+
Sbjct: 106 LPEGLLHWRVP----DTTLAYQQL-ASLHRQQLNAAVVAVTGSAGKTTTRELI-----RA 155

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG------L 194
            L+S  +GP   I + A +N      P+ L       ++Q    V VE    G      L
Sbjct: 156 ALAS--LGP---IQASASNNNNDIGVPLTLLG-----TTQHHAAVVVEMGMRGPGEIERL 205

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            +     I +I    TN+G  HI    +++A   AK  +    L  +   +I A D   +
Sbjct: 206 SRCAQPDIAVI----TNIGTAHIGRLGSREAIAAAKCEITAA-LKLDGVVVIPAGDPLLE 260

Query: 255 EVMKRAHNAGC-RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             + R       RV  VG  G     L     + +  + +  +   +FD+  PL G    
Sbjct: 261 TALARVWQGRIHRVALVGDPGLTNSQLPAANDLADVDEQSGVLTLGEFDYRMPLAGRHNA 320

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHV-VPG 344
            N L+A  +   + +DS    + L  L V VPG
Sbjct: 321 RNWLLARAVASGLNVDS----DSLVALDVDVPG 349


>gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 452

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 162/368 (44%), Gaps = 45/368 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         + 
Sbjct: 25  DTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------DL 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G  
Sbjct: 76  PQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG-- 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
               +F  D  +    PI L + L++     V  + + A+  G     +   +  A    
Sbjct: 134 ----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALVN 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRAH 261
           NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + + 
Sbjct: 183 NLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFSP 241

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA L
Sbjct: 242 NAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAAL 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379
            +A+G     +   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  +
Sbjct: 293 SMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSEM 350

Query: 380 TSGRIIVV 387
              R++VV
Sbjct: 351 PGYRVLVV 358


>gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 463

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 162/363 (44%), Gaps = 27/363 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR  QAG IF+ + G + DGH FI +AI +G  A+V + A+  Q  +     +  I
Sbjct: 30  VSTDSRTAQAGEIFIPLRGERFDGHDFIDRAIKRGVRALVAAEAW-WQRQNHQFPKDLTI 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V  T + L   A     +    ++A+TG+ GK++    +  +      S F++     
Sbjct: 89  VLVPETLRALGDLAHCWRQRFSGPVIAITGSCGKTTTKEMIALVLA----SRFRVLKNEL 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
             +            I L + L  L++   T V     +H  +  RL  I +      TN
Sbjct: 145 NLNNL----------IGLPQTLLALNTGHETAVVEMGMNHFGEIRRLAQIARPDIAVVTN 194

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSV 270
           +   H++   + +    AK  + + L  + +  IIY ADD   +  +   H+   + LS 
Sbjct: 195 VHAAHLEGLGSLEGVAQAKAEVIQGL--RNNGLIIYNADDQRLRAAL---HHFKGQTLSF 249

Query: 271 GYQ-GKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G+  G  I     C      Q+  I  +GK +     LPG  Q+YNAL AA + +A+G+ 
Sbjct: 250 GFDPGAQIQAGPPCQCGVWGQRAEIRHQGKIWPLELQLPGRHQLYNALAAAAVGLALGLP 309

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIV 386
           +  + + L +   +  R +    ++ G  I+ D Y     S+ M L+ + ++ + GR + 
Sbjct: 310 AEQISQALGRFAGLKHRSQMQ-CHTSGIHIFNDCYNANPGSMAMALQTLASLKNQGRAVA 368

Query: 387 VFG 389
             G
Sbjct: 369 ALG 371


>gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
 gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
          Length = 457

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 17/139 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN VS+D+R ++ G +FVA+VG + D H F  QA+   A A++V     L         N
Sbjct: 28  INAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEANASALLVERKLDL---------N 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG- 148
              +VV++T+  L   ++ ++ +     +A+TG+ GK++V   V  I Q+ G   F  G 
Sbjct: 79  ITQVVVEDTKLALGQLSAWIHKQCNVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAGN 138

Query: 149 -------PTSTISSFAQDN 160
                  P + + S A D+
Sbjct: 139 FNNDIGVPLTLLRSEANDD 157


>gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
 gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
          Length = 457

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 17/139 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN VS+D+R ++ G +FVA+VG + D H F  QA+   A A++V     L         N
Sbjct: 28  INAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEANASALLVERKLDL---------N 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG- 148
              +VV++T+  L   ++ ++ +     +A+TG+ GK++V   V  I Q+ G   F  G 
Sbjct: 79  ITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAGN 138

Query: 149 -------PTSTISSFAQDN 160
                  P + + S A D+
Sbjct: 139 FNNDIGVPLTLLRSEANDD 157


>gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 445

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F          ++ ADDA+ +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GGGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            IS +        PL G     N + A  LC A G+    +LEH++    +P R E +G 
Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAAGLPREALLEHIKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
 gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
          Length = 452

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 138/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEXTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G          +N +  P  +     L          + + A+  G     +   
Sbjct: 128 TLYTAGNL--------NNDIGVPXTL-----LRLTPEYDYAVIELGANHQGEIAWTVSLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
           +  A    NL   H++   +      AK  +F   LP+   AI  AD+           S
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIXNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L  ++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSXSVGATLDAIKAGLANLKAVPGRL 317


>gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
 gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
          Length = 470

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 42/382 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   VS+DSR    G +F+AI G++ D H F+PQ   +   A++V  A + +++S     
Sbjct: 25  RFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLV--ARTPENWS----- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P + V +TR+ L   A     +    ++AVTG++GK++V   +  I   +  +  ++ 
Sbjct: 78  -VPAIRVADTREALGALARGWRRQFDLPLVAVTGSNGKTTVKEMIASIFAAAVGADARL- 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +T  +F  +N +  P  ++   A   L+      V +  +  G  +      +     
Sbjct: 136 --ATAGNF--NNDIGLPLTLFRLHAAHRLAV-----VELGMNHPGETEQLAKLAEPTVAV 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKR 259
             N  R+H ++  T +A       +   L P E  A+  ADDAY+           ++  
Sbjct: 187 VNNAQREHQEFMATVEAVALEHASVIHALSP-EGTAVFPADDAYASIWRVAATGNRIIDF 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A N   R      QG F          + ++++I       D    + G    +NAL A 
Sbjct: 246 ALNNAERTTEAAVQGTF----------DGKRLSIDTPQGRLDVTLQVLGNHNAHNALAAT 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKN 375
              +A G+    +   LE    V GR +       S  G   +D  + +N  S+   +  
Sbjct: 296 SAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 376 IRTITSGRIIVVFGCGGDRDQG 397
           + +  S R++V+   G   D G
Sbjct: 356 LASRESPRVLVMGDMGEVGDNG 377


>gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
 gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
          Length = 460

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 10/112 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +IN V  DSR +  G +F+A+ G K D H F+     QGA A++V+    +         
Sbjct: 29  QINTVEIDSRKMVRGGLFIALKGEKFDAHDFVADVAKQGAGALLVNRRLEI--------- 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQR 139
           + P +VV+NTR  +   A+ +  +    I+A+TG+SGK+SV      I CQR
Sbjct: 80  DCPQVVVENTRLAMGKLAAWVRQQSKARIVALTGSSGKTSVKEMTAAILCQR 131


>gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 470

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 142/322 (44%), Gaps = 25/322 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            I+ V +D+R I+ G +FVA+ G + D +  + +A A+GA A++  +  +   + A +  
Sbjct: 26  SIHRVHTDTRTIEPGDLFVALQGERFDANDMLHEAFAKGAAAVLCHAGLTASAYPAGL-- 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P + V+N++  L+  A+    +    ++AVTG++GK++V   +  I          + 
Sbjct: 84  --PRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKTTVTQMIASILHAHAPDGAAL- 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             +T+ +F  +N +  P  +   +A   ++    G+ H    A    + Q     + L+ 
Sbjct: 141 --ATVGNF--NNDIGVPLTLLRMRAQHRIAVVELGMNHPGEIAVLAAMAQ---PTVALV- 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H+++  T +A       +    LP+   A+  ADD Y+   + R  +AG R
Sbjct: 193 ---NNAQREHLEFMHTIEAVARENGSVLSS-LPETGTAVFPADDDYAP--LWRELSAG-R 245

Query: 267 VLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           V++    G  G    ++         QV       +  +   + G   V N+L AA   +
Sbjct: 246 VVATFARGDAGADFVVRSASWQDGAWQVVAGTPQGELRYRLAIAGRHNVKNSLAAAACAL 305

Query: 324 AIGIDSALVLEHLEKLHVVPGR 345
           A G+ +  V   LE    V GR
Sbjct: 306 AAGVPAITVARGLEAFVPVKGR 327


>gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 442

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 130/327 (39%), Gaps = 32/327 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I   S DSR+++ G +FV + G+K DGH FI +AI  GA   +V+    L    +    +
Sbjct: 8   ITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRRHSV---H 64

Query: 90  TPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P+++ V++T   L   A +   K   +++AVTG+ GK++    +  +            
Sbjct: 65  PPLVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAEK-------- 116

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             S + +    N     S I L   L  L+    V  + +  ++ G      +  +   G
Sbjct: 117 -YSILKTHGNLN-----SEIGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELARPNVG 170

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   HI+   + +    AK  L E LLP    AI+  DD + + +  +       V
Sbjct: 171 VITRIAESHIEKLGSLENIAEAKGELLENLLPG-GTAILNCDDNWVRRLRSKVPG---EV 226

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L  G     +    V    +K    I    K      PL G+  + NAL A  +    G+
Sbjct: 227 LYYGLTDGDLSAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVGRVFGL 286

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR 354
           D    +  LE          F GT+ R
Sbjct: 287 DLTQSIRALEG---------FTGTSMR 304


>gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
 gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
          Length = 457

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN VS+D+R ++ G +FVA+VG + D H F  QA+   A A++V     L         N
Sbjct: 28  INSVSTDTRTVEEGALFVALVGERFDAHDFCGQAVEANASALLVQRKLDL---------N 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +VV++T+  L   ++ ++ +     +A+TG+ GK++V   V  I Q+ G   F  G
Sbjct: 79  ITQVVVEDTKLALGQLSAWIHEQCNVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAG 137


>gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
 gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
          Length = 476

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 158/407 (38%), Gaps = 82/407 (20%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           + R+I     DSR ++  ++F+ + G K DGH FIP    +GA A++  S   L++ +  
Sbjct: 24  KTREIQGAVIDSRLVEKDYLFIPVRGEKVDGHSFIPSVFEKGALAVL--SEEKLENPAG- 80

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQ 138
                P ++V+NT   +   A+         ++ +TG+ GK+S    +AS + Q   + +
Sbjct: 81  -----PYILVENTLDAMKKIAADYRRGLDIKVVGITGSVGKTSTKEMIASVLAQKYNVLK 135

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  + +IG   TI    +++++      I     +  LS+     + V          
Sbjct: 136 TEGNLNNEIGLPLTIFKIREEHQVAVLEMGISEFGEMDRLSTMANPDICV---------- 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN+G  H++   T+     AK   F  L P +  A++  DD   K   
Sbjct: 186 -----------ITNIGLCHLENLITRDGILKAKTESFAHLTP-DGIAVLNGDD--DKLCD 231

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----------ISVEGKDF------- 300
           K+  N        G    F  ++K   +   ++ T           +VE  D        
Sbjct: 232 KKVVN--------GKPAVFYGIEKAAKVAETEEGTKTLAEKTVYATNVEAVDLTGTKAAI 283

Query: 301 -------------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                        +   P+ GE  VYNAL A  +   +G+    +   +E +  + GR  
Sbjct: 284 HYPSKETGGEVTMEVTIPIAGEHNVYNALAAVSVARELGLTCDEMKRGIESVQTIGGRSN 343

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD 393
            +  N   G   +D  + +N + M    ++ +   GR I V G  G+
Sbjct: 344 LIHKN---GITIIDDCYNANPVSMKASIDVLSNAPGRKIAVLGDMGE 387


>gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 157/369 (42%), Gaps = 22/369 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E     + +D+R    G +F+A+ G   D H F+ +A+ QGA  ++V    +L +    
Sbjct: 21  KETNFAGIGTDTRAQLQGQLFIALKGEAFDAHNFLDKAVEQGASGLLVHEENALIE---K 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           ++    IL+V +T K L    +    +    I+ +TG++GK++   F   +   S    +
Sbjct: 78  LKDKATILLVPDTLKALQKLGNWARHESSARIVGITGSNGKTTTKEFTAALVGSSMDVHY 137

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G      SF  +N    P  +     L    ++ V  + +  +  G     +   +  
Sbjct: 138 NKG------SF--NNHWGVPFTL-----LQLPPNKDVAIIEMGMNHAGEITELVHIAEPD 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263
               T +GR H+++  T +    AK  ++E     ++  I   D+  +  +  +A +   
Sbjct: 185 VVVCTMVGRAHMEFFGTIEKVAEAKEEIYEA-AGDQTVRIYNLDNTQTHNMYVKARDKFP 243

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             R+L+   +     +  + +  N  +++I  S+ G+       + G   + N + AA +
Sbjct: 244 KARILTFSSEDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQVFGAQNLTNLMAAASV 303

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
            +A+G+  A V   L       GR + V   S    I+  Y    +S++ ++ N++ +T 
Sbjct: 304 GLAVGMTPAQVWAGLPACKTNWGRNQLVHLKSGAQMIFDAYNANPDSMKALIDNMKLLTV 363

Query: 381 SGRIIVVFG 389
            GR + VFG
Sbjct: 364 PGRKVGVFG 372


>gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
 gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci RD1]
 gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
          Length = 448

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 43/371 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ V+ DSR ++ G +F A+ G   DGH F+ QA   GA A VVS  Y    F     
Sbjct: 24  KKISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGDSF----- 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               ++VV++T + L              I+ +TG+ GK++  +F +     S +     
Sbjct: 79  -GLELIVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFL--SSVYRVYA 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            P S       +++LT P  + +A        +    + +  S     Q  L  ++    
Sbjct: 136 SPKS------YNSQLTVPLSLLMADG-----DEDFVILEMGVSEPKNMQDLLSIVEPEVA 184

Query: 208 SFTNLGRDHIDYHQTQ--QAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261
             TN+   H+     Q  Q     K  +      +LLPK+SP   Y         MK++ 
Sbjct: 185 VITNIADQHVMNFPDQGVQGIAEEKSHILRNSRVQLLPKDSPWYSY--------FMKQSV 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +A     +   +    + K +     K  V IS    D DF    P +    N L++  L
Sbjct: 237 SAEKFSFAFYDETADFYYKAI----RKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSL 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTI 379
              + +    ++     L + P RFE    + R G   ++ A+ +    MI  L  I   
Sbjct: 293 AWLLDVPVDRIIHSCCDLQLPPMRFE---QSVRNGIQIINDAYNACPEAMIAALDAIPNP 349

Query: 380 TS-GRIIVVFG 389
           +  G++I++ G
Sbjct: 350 SEGGKVILILG 360


>gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
 gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
          Length = 422

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 160/401 (39%), Gaps = 62/401 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +FVAI G K DGH +  +AI +GA  +V      LQ           ++ V
Sbjct: 10  DSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEK--KLQHI-----PEEKLITV 62

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------GLSSFQIG- 148
           ++T +FL   A     KH   ++ +TG++GK++    + Q+  +       G  + +IG 
Sbjct: 63  NDTIEFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGKDRAFRNPGNLNTEIGL 122

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           P S ++ +  +        +     ++ L    + HV++                     
Sbjct: 123 PLSILNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAI--------------------- 161

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H      Q+     K++L E  + K   AI+     Y K+++ R       ++
Sbjct: 162 LLNVGTAHRGIAGNQEMILRGKLQLIEN-MQKNGTAIVL----YDKKLLDRISLKP--MV 214

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYN-ALVAAGLCIAIG 326
           + GY+     L   C I    +       +   F L  +    Q+ N + V A L I +G
Sbjct: 215 TFGYKKGDYQLVDYCYIDFSTKAFYKTPREQLIFNLKSIWNAGQLTNISAVLAALDI-LG 273

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGR 383
           ID    +  LE    V GRF  +  N     IYV    Y  +  S E  ++ I+ +    
Sbjct: 274 IDCNKNI--LENFTPVAGRFRVMNCNG----IYVVDDTYNASIESFETAVETIKKLGKRS 327

Query: 384 IIVVFGCGGDRDQGKRPI-----MGKIALDLADIAIVTDDN 419
             VV   G  ++QGK  I     +G+I   L  + +   DN
Sbjct: 328 FAVV---GSIKEQGKYSIETHRKLGEILEKLDGVVVYNVDN 365


>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]
          Length = 479

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 30/259 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ILAVTGT+GKS+VA+F  Q+    G+  F  G      S A    LT PSP         
Sbjct: 119 ILAVTGTNGKSTVATFSGQMLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSP--------- 169

Query: 177 LSSQGVTHVS-VEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              + V  V+ VE SS+ L+   +H    + ++     NL  DH++ H+T + Y   K R
Sbjct: 170 ---KPVFQVAVVEVSSYQLEVPNKHFCPSVAVV----LNLTSDHLERHKTMKNYAITKCR 222

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQ 290
           L    +      I+   +    E M+   N     +++ + G F  + + K   + + + 
Sbjct: 223 LLSH-MTNSKLGILPFGNKLLNEAMEELVNE----VNLAWIGAFPGVKVDKEEKVASLRV 277

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAA--GLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             I V  +       + G    YNA VAA   L + +GID+  +   +EKL V P R + 
Sbjct: 278 PAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIEKLRVPPHRMQI 337

Query: 349 VGTNSRGGRIYVDYAHTSN 367
           V  +S  G  ++D +  +N
Sbjct: 338 VHKDSY-GVTWIDDSKATN 355


>gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Filifactor alocis ATCC 35896]
          Length = 452

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 163/391 (41%), Gaps = 35/391 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++DSR ++ G +F+AI G   DG+ F+  A+  GA A++           ++I   
Sbjct: 27  IYSITTDSRKVKQGDLFIAIKGEHFDGNHFVDMALDNGAVAVL-----------SSISHK 75

Query: 90  TP-ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +P ++ V +T K L   AS         ++++TG+SGK++    +        L+S Q  
Sbjct: 76  SPRVITVPDTVKALGKLASGYRDMLDIPVISITGSSGKTTTKDMI-----FYALNS-QCN 129

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  +F  +N +  P  I     L+      V  + +  SS G  ++     K   G 
Sbjct: 130 AYRTEGNF--NNEIGMPLTI-----LNSDEEHDVMILEMGMSSLGEIEYLCSIAKPNIGV 182

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H++   +Q+  F AKM +    + ++   ++  +D + + + K  +    +  
Sbjct: 183 ITNIGTAHLEQLGSQEKIFEAKMEI-TSFMHEKDILLVNGEDKFLRNLDKDVYQPMIKTF 241

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                  +   K      +   +   ++G + ++  P  G+  + N+L A G+   + +D
Sbjct: 242 GFSNSCDYF-CKNYDYREDSTDICAMIDGLEVNYTIPSLGKHNILNSLAALGVASVLQMD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
                + L  +   P +         G  I  D Y    +S++ +L  +    + R I +
Sbjct: 301 LQKAAKSL--IDFQPSKLRMQIEKKDGITIINDSYNANPDSVKSVLSILAEKNNVRRIAI 358

Query: 388 FG----CGGDRDQGKRPIMGKIALDLADIAI 414
            G     G D D+  R I G+ A    DI I
Sbjct: 359 LGDMLELGRDSDKYHRQI-GECAAHSCDILI 388


>gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
          Length = 460

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 25/231 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR ++ G IFVA  G + DGH F  +A+ QGA  +VV+           +     I
Sbjct: 28  VTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYVVVNHPVP------GVPEEKAI 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L  D+    + + A+     HP+ ++ VTG+ GK++           + LS F      T
Sbjct: 82  LCPDSYHAMMVMGANYRSQYHPK-MVGVTGSVGKTTTKQMTY-----AALSGF----GET 131

Query: 153 ISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIAGSFT 210
           I +   Q+N L  P      + L  L S     V     SH  +  RL    +   G  T
Sbjct: 132 IKTEGNQNNELGMP------RTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIIT 185

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +G  HI    +Q+    AK+ +    LP+ +P ++  DD + ++    AH
Sbjct: 186 CIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDPFLRKAALPAH 235


>gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB900]
          Length = 466

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 145/351 (41%), Gaps = 34/351 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V          
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERP------- 83

Query: 84  ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             I +    LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200
               + PT  I+    +N L  P  +  L K   Y   + G  H      +  + Q  + 
Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI        N+G  H+     +     AK  ++  +LP +  AI+   D ++ E+ + A
Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +++S G  G  +   ++  +       +           P  GE  V NA  A  
Sbjct: 246 KS--HQIMSFGAGGD-VFATEIELLPQSANFQLHTPQGSSLVRLPFAGEHNVQNATAAVA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A+G+    +++ LE+     GR  F+    +   +++D  + +N   M
Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350


>gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis]
 gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 457

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 167/387 (43%), Gaps = 39/387 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   G 
Sbjct: 7   KNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 65

Query: 69  EAIVVSSAYSLQDFSA-TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            A+       L D S      N  +++VD+T   L   A     +    ++ VTG++GK+
Sbjct: 66  AAV-------LWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  +      + +++  T    +F  +N +  P  +     L+   +  +  + +
Sbjct: 119 TTKDMIHAVLG----TQYRVHKTG--GNF--NNHIGLPLTV-----LAMPENTEIAVLEM 165

Query: 188 EASSHGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             S+ G     +D +  +A       TN+G  H+    +++    AK+ +   L  KE  
Sbjct: 166 GMSAKG----EIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDG 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +IY  D   + +++ A++   +    G    +  L+ V    +++    +++G +  F 
Sbjct: 220 VLIYIGD---EPLLQNAYSCQTKTYGTGTHNDY-QLQDVS--QSEEGTHFTIKGIENTFF 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NA+ A       GI      + L  L V   R E + T+S    I   Y 
Sbjct: 274 IPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 333

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFG 389
            +  S++  ++   ++   G+ ++V G
Sbjct: 334 ASPTSMKAAIQLTESLEGYGKKMLVLG 360


>gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 453

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 158/373 (42%), Gaps = 43/373 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           ++I  VS+D+R I+ G +F+A+ G   +G+ ++  A  +GA+ AIV      L +    +
Sbjct: 24  KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  ++ V NT + L   A     K    ++ +TG++GK+S    V  +        ++
Sbjct: 80  KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205
           +  T    +F  +N +  P        L  L       V++ E    GL Q     IK +
Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178

Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           A       G  TN+G  HI+  +T++    AKM +      K +  ++  +D +    + 
Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +A  +++  G    F +  K +       + T+    K+ +F   +PGE  + N ++
Sbjct: 234 ALPSAEYKIVKTGVGENFKVGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLIL 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
              +   +G+    +   L+ +     R E +  +  G  I  D Y  +  +++  +  +
Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351

Query: 377 RTITSGRIIVVFG 389
           + I   R I V G
Sbjct: 352 KNIEGKRRIAVLG 364


>gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
 gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
          Length = 445

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGDED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
 gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
          Length = 473

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +DSR IQ G +FV IVG K DGH F+   +A GA A     A+  +D    + ++
Sbjct: 27  IQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLASGAGA-----AFWQRDHQP-VPAD 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            P+++V++T K L   A+    +    ++ +TG++GK++V   V  + + +
Sbjct: 81  LPLILVEDTLKALQSLAAVYLSESRAKVVGITGSNGKTTVKDMVSALLETT 131


>gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
 gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
          Length = 460

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 145/357 (40%), Gaps = 29/357 (8%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +I   Q  +  I  +S+DSR I    +F+A+ G++ D H FI     +GA A++V+    
Sbjct: 19  TITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKID 78

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           ++          P ++V +TR  +   A+ +       I+A+TG+SGK+SV      I +
Sbjct: 79  VE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILR 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G + +  G          +N +  P  ++               + + A+  G   + 
Sbjct: 130 HCGETLYTHGNL--------NNDIGVPLTLF-----RLTPEHRFAVIELGANHIGEIAYT 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKE 255
           +D +K  +    NL   HI+   + Q    AK  +F   L ++  AII     D A  ++
Sbjct: 177 VDMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTG-LKEQGTAIINQQSNDVALWQQ 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                       LS   Q  F +   +         T+           PLPG   + NA
Sbjct: 236 HFNSRQTQWSFSLSADTQADF-YPTDIVVNQLTTDFTLHTPEGCVAITLPLPGRHNIANA 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           L A+ L +++G     + + L  L  VPGR   V   +  G+I +D  + +N   M+
Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTT--GKIVLDDTYNANDGSMM 349


>gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
 gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
          Length = 456

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 130/333 (39%), Gaps = 41/333 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++  V+ DSR IQ   +F+AI G + DGH+FIPQ+I  GA   V         +     
Sbjct: 26  KEVTGVTIDSRKIQKDCLFIAIRGARVDGHMFIPQSIHDGALCAVSEKRIESASY----- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P ++V++  + L   A          ++ ++G+ GK+S    +  +  +      + 
Sbjct: 81  ---PYIMVNSCAQALKDIAEHYRRSLRLKVVGISGSVGKTSTKEMIASVLGQ------KY 131

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  +F  +N +  P  I+     +      V  + +  S  G  +      +    
Sbjct: 132 NVLKTEGNF--NNEIGLPLTIF-----NIREEHEVAVLEMGISDFGEMERLAKMARPDVC 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H++  ++++    AK  +F  + PK    I+  DD     V    H      
Sbjct: 185 VLTNIGCAHLEQLKSREGILKAKTEMFLYMNPK-GDIILNGDDDMLASVTPANH------ 237

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318
                +  F  L    A   +    + ++G    F  P         +PG   VYNAL A
Sbjct: 238 ----IEPVFFGLDPALAYSAEDIENLGLKGTSALFHTPDSEFGAHISIPGAHMVYNALAA 293

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +   +G++   + + +E L  + GR   + T
Sbjct: 294 IAVGRVLGMNDGEIRQGIESLVPLAGRNNLIET 326


>gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
 gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
          Length = 453

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|298531034|ref|ZP_07018435.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509057|gb|EFI32962.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 453

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 137/348 (39%), Gaps = 41/348 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  SF+  I + +GL      PT  I       RL       L     YL
Sbjct: 108 VAVAGTHGKTTTTSFLGTIFKEAGLD-----PTVIIGG-----RLNKYGSNALPGTGEYL 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++          S G     L  I ++    TN+G DH+DY++       + +R F   
Sbjct: 158 IAEA-------DESDGSFLTLLPIINIV----TNIGADHLDYYRDLDEIRESFVR-FMNN 205

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P     ++  DD   ++V+ R       VL+ G+Q +     ++ +     Q  +    
Sbjct: 206 VPFYGLNVVCGDDPEIRQVLDRVKRP---VLTYGFQEQSRLRAEILSTSPGSQFNV-FHD 261

Query: 298 KDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           ++F     L  PG   V N L A G+ I  GID   +L  L     V  RFE  G   + 
Sbjct: 262 QNFWGRVKLNHPGRHNVLNCLAAIGVAIQAGIDKQDILRSLADFGGVGRRFERKGI--KD 319

Query: 356 GRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADI 412
             I V DY H    +   L+  R     R +VV      R    R   G+    L  AD+
Sbjct: 320 DVIVVDDYGHHPTEIAATLETARQCHPDRRLVVL-FQPHRFTRTRDFFGEFCRVLAGADL 378

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            ++T+  P SEDP       I G+ G+      ++  RT +      D
Sbjct: 379 LLLTEIYPASEDP-------IPGVNGWSLAQGVMQVARTPVRFYQSLD 419


>gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
 gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
          Length = 453

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
 gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
          Length = 453

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWMHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
 gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
          Length = 461

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 170/394 (43%), Gaps = 58/394 (14%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN---------------KEDGHLFIPQ 62
           ++I   Q  E  ++ +  DSR I+ G +F+ I  +               ++DGH FI  
Sbjct: 17  INISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFINS 76

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A       S  D    ++++ P+++V +T+  L   A     K     +AVTG
Sbjct: 77  ALKNGAVA-------SFADH--IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQ 180
           ++GK++    +  +  R     +++  T      + +N +  P+ I    A + ++    
Sbjct: 128 SNGKTTTKDLIASVLSR----KYKVHRTVA----SNNNEIGVPTTILNMPADTEIAVIEM 179

Query: 181 GVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           G+ H+  + A S  L+ +    I LI    T +G  HI++ +T+    +AKM + + L  
Sbjct: 180 GMDHLGQLTALSKMLEPN----ISLI----TMIGEAHIEFFKTRDKIADAKMEIIKGL-- 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+    IY  D    E++ +          V +  K  +   V  I +K++++  V  + 
Sbjct: 230 KKDGTFIYDGD----EILLKERADLFSGEKVTFGEKESNNFWVSQIEDKKRLSFKVNQET 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +     L G+F   N   A  +     + S  + E  + L +   R + + T S+G  I 
Sbjct: 286 YS--VNLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLL-TGSKGETII 342

Query: 360 VDYAHTSNSLEM----ILKNIRTITSGRIIVVFG 389
            D  +++ +  +    ILK+    T G+ I+V G
Sbjct: 343 SDVYNSNPTAAIKAIEILKDFP--TRGKKILVLG 374


>gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 452

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 13/112 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V++D+RH+  G +FVA+VG + DGH F+ QA A GA A VVS            R  
Sbjct: 24  VTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGAVAAVVSR-----------RVA 72

Query: 90  TPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           +P+  + V +TR  L + A          ++AVTG SGK++V   +  I  R
Sbjct: 73  SPLAQIEVADTRLALGILARAARRAWSGELVAVTGNSGKTTVKEMLAAILSR 124


>gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
 gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
          Length = 457

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 133/332 (40%), Gaps = 45/332 (13%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P +  E+    +++D+R+++ G +F+A+ G K DGH +   A+ +GA  ++  +     
Sbjct: 21  IPEKILEKSFTGITTDTRNLEPGQLFLALRGEKFDGHNYAALAVEKGALTVIAEAT---- 76

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
             +A+     P++ V+NT K     A     +    ++AVTG+ GK++    +  +    
Sbjct: 77  --NASQLEGLPLIQVENTLKAYQQIARWWRDQFQIPVIAVTGSVGKTTTKELIAAVLSTK 134

Query: 141 GLS-------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           G         + +IG   T+          TP   Y    ++   S  +  ++  A+   
Sbjct: 135 GTVLKTQANYNNEIGVPKTLLEL-------TPDHDYAVIEMAMRGSGQIAELTEIANP-- 185

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                        G  TN+G  HI    + +A   AK  L   +      A++  D+   
Sbjct: 186 -----------TVGVITNVGTAHIGLLGSTEAIAKAKCELLAHM-SNNGVAVLNHDN--Q 231

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           + +   A     + L+ G +G  +  + +          + VEG   +F  PLPG     
Sbjct: 232 RLIDTAAQVWQGQTLTYGLEGGDVQGQLIAP------EILKVEG--MEFPIPLPGRHNAL 283

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           N L A  +   +G+D   +   L  + + PGR
Sbjct: 284 NYLAALAIGKLLGVDWETLRNGL-NVELPPGR 314


>gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
 gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
          Length = 452

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R +  G +FVA+ G + D H F  +A   GA A++VS           + +N
Sbjct: 24  LDAVTTDTRKVTPGCLFVALKGERFDAHDFADKAQESGAGALLVSR---------PLDTN 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G
Sbjct: 75  LPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG 133


>gi|302335883|ref|YP_003801090.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
 gi|301319723|gb|ADK68210.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
          Length = 471

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 126/284 (44%), Gaps = 30/284 (10%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           + + P+  +A+TGT+GK++  S V  + + +G  +  +G            RL T   + 
Sbjct: 110 WRESPDRWVAITGTNGKTTTTSLVTAMLRSAGTDAVSVGNI---------GRLCTDELVR 160

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                 +++         E SS  L   RL  +     +  N+  DH+++H + + Y  A
Sbjct: 161 RRDGAWFVA---------ELSSFQLATSRL--LHPRCAALLNVTPDHLEWHGSLEGYAAA 209

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K R+F+  L  +  A++  +D Y ++ + R    G R L VG + + +  +   A     
Sbjct: 210 KERIFQN-LSGDDLAVVSQEDGYCRDAIGRLEARGVRTLHVGVREEPVSGE--AAFVRDG 266

Query: 290 QVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +T+ ++G +         PL GE    N L A+ + + +G     V   LE  H +  R
Sbjct: 267 WLTVRLDGGERRVAPMANLPLRGEHNAQNMLAASSMALFLGASVEAVRRALEGFHPIEHR 326

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            E VG  +  G  +V+ +  +N+ + + K +     GRI+V+ G
Sbjct: 327 IEPVGEFA--GVRFVNDSKATNT-DSVEKALTAFDRGRIVVLLG 367


>gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
 gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
          Length = 457

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 167/387 (43%), Gaps = 39/387 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   G 
Sbjct: 7   KNIAEMVEGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 65

Query: 69  EAIVVSSAYSLQDFSA-TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            A+       L D S      N  +++VD+T   L   A     +    ++ VTG++GK+
Sbjct: 66  AAV-------LWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  +      + +++  T    +F  +N +  P  +     L+   +  +  + +
Sbjct: 119 TTKDMIHAVLG----TQYRVHKTG--GNF--NNHIGLPLTV-----LAMPENTEIAVLEM 165

Query: 188 EASSHGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             S+ G     +D +  +A       TN+G  H+    +++    AK+ +   L  KE  
Sbjct: 166 GMSAKG----EIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDG 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +IY  D   + +++ A++   +    G    +  L+ V    +++    +++G +  F 
Sbjct: 220 VLIYIGD---EPLLQNAYSCQTKTYGTGTHNDY-QLQDVS--QSEEGTHFTIKGIEKTFF 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NA+ A       GI      + L  L V   R E + T+S    I   Y 
Sbjct: 274 IPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 333

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFG 389
            +  S++  ++   ++   G+ ++V G
Sbjct: 334 ASPTSMKAAIQLTESLEGYGKKMLVLG 360


>gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
 gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
          Length = 461

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 170/394 (43%), Gaps = 58/394 (14%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN---------------KEDGHLFIPQ 62
           ++I   Q  E  ++ +  DSR I+ G +F+ I  +               ++DGH FI  
Sbjct: 17  INISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFINS 76

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A       S  D    ++++ P+++V +T+  L   A     K     +AVTG
Sbjct: 77  ALKNGAVA-------SFADH--IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQ 180
           ++GK++    +  +  R     +++  T      + +N +  P+ I    A + ++    
Sbjct: 128 SNGKTTTKDLIASVLSR----KYKVHRTVA----SNNNEIGVPTTILNMPADTEIAVIEM 179

Query: 181 GVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           G+ H+  + A S  L+ +    I LI    T +G  HI++ +T+    +AKM + + L  
Sbjct: 180 GMDHLGQLTALSKMLEPN----IALI----TMIGEAHIEFFKTRDKIADAKMEIIKGL-- 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+    IY  D    E++ +          V +  K  +   V  I +K++++  V  + 
Sbjct: 230 KKDGTFIYDGD----EILLKERADLFSGEKVTFGEKESNNFWVSQIEDKKRLSFKVNQET 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +     L G+F   N   A  +     + S  + E  + L +   R + + T S+G  I 
Sbjct: 286 YS--VNLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLL-TGSKGETII 342

Query: 360 VDYAHTSNSLEM----ILKNIRTITSGRIIVVFG 389
            D  +++ +  +    ILK+    T G+ I+V G
Sbjct: 343 SDVYNSNPTAAIKAIEILKDFP--TQGKKILVLG 374


>gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis HI4320]
 gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus
           mirabilis HI4320]
          Length = 460

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 145/357 (40%), Gaps = 29/357 (8%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +I   Q  +  I  +S+DSR I    +F+A+ G++ D H FI     +GA A++V+    
Sbjct: 19  TITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKID 78

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           ++          P ++V +TR  +   A+ +       I+A+TG+SGK+SV      I +
Sbjct: 79  VE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILR 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G + +  G          +N +  P  ++               + + A+  G   + 
Sbjct: 130 HCGETLYTHGNL--------NNDIGVPLTLF-----RLTPEHRFAVIELGANHIGEIAYT 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKE 255
           ++ +K  +    NL   HI+   + Q    AK  +F   L ++  AII     D A  ++
Sbjct: 177 VNMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTG-LKEQGTAIINQQSNDVALWQQ 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                       LS   Q  F +   +         T+           PLPG   + NA
Sbjct: 236 HFNSRQTQWSFSLSADSQADF-YPTNIVVNQLTTDFTLHTPEGGVAITLPLPGRHNIANA 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           L A+ L +++G     + + L  L  VPGR   V   +  G+I +D  + +N   MI
Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTT--GKIVLDDTYNANDGSMI 349


>gi|319778584|ref|YP_004129497.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Taylorella equigenitalis
           MCE9]
 gi|317108608|gb|ADU91354.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Taylorella equigenitalis
           MCE9]
          Length = 443

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 118/286 (41%), Gaps = 42/286 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           ++++AV+GT GK++  S +  I Q +GL+ +F IG  +    F    R  + S  ++ +A
Sbjct: 91  QHVIAVSGTHGKTTCTSMLTHILQSAGLNPNFLIGGIA--KDFNISARFNSQSKFFVIEA 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y ++        +  S  +  H    I        N+  DH D     +A  N +   
Sbjct: 149 DEYDTA------FFDKRSKFVHYHANTAI------INNIEYDHADIFPDLKAIEN-QFHN 195

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  +LP+    I+  +D     ++ R     C+ + +G  G + +            V I
Sbjct: 196 FVRILPRNGTLIVPKNDETIDRILSRG--LYCQKIEIGDGGTWSY------------VNI 241

Query: 294 SVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           S   ++FD L          + + G   + NAL        IG+  AL +E L     + 
Sbjct: 242 SDSTQNFDILKDGQNVGHINWEMTGLHNIKNALSCIAAADVIGVKPALAIEALNNFSGIK 301

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
            R E VG N     IY D+AH  +++   +  +R  +   RII VF
Sbjct: 302 RRMEVVG-NPNNITIYDDFAHHPSAIATTIDGLRKKVGDPRIIAVF 346


>gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 463

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 138/349 (39%), Gaps = 34/349 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR IQ G +F A+ G + DGH ++  A  +GA   VV S              
Sbjct: 24  VRNVAFDSREIQKGDLFFALKGTESDGHNYVDAAFKRGAAGAVVMSPVPY---------- 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++VD++ + L   A     ++   I+ +TG+ GK+S    ++   +R       + P
Sbjct: 74  -PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALER-------MAP 125

Query: 150 TSTISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                S    N      P+ LA+    +L  +   G+ H    +    L Q  +  I  I
Sbjct: 126 EKVHYSLKSYNN-HVGVPLSLARMPEESLFGIFEMGMNHAGELSDLTKLVQPDVALITAI 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A +       H  +   + A   AK  +FE LL     AII  D  Y   +  +      
Sbjct: 185 APA-------HAAFFADETAIAEAKSEIFEGLLSG-GIAIIPHDSPYRDLLTAKVQEKKA 236

Query: 266 RVLSVGY-QGKFIHLKKVC-AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            + S G+ +G  I  + +      +  VT S+  +   F   +  E+ + NA+    +  
Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAMAVLAVVD 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM 371
           A+G D  L    L  +    GR + F      G  I +D ++ +N   M
Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASM 345


>gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
 gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
          Length = 456

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 144/363 (39%), Gaps = 60/363 (16%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  +  +S DSR ++   +FV ++G+K D H FI QA   GA A++ S   ++      
Sbjct: 22  EEMILENISIDSRTMKGNDLFVPLIGDKVDAHRFIGQAFDNGAAAVLTSRHDAMD----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQ 138
             S  P + V++T+K L    S    +    ++ +TG+ GK++    V         + +
Sbjct: 77  --SARPWIQVEDTKKALQAIGSYYRDRLILPLVGITGSVGKTTTREMVACALSARYSVYK 134

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G  + Q+G   TIS  A ++ +                  GV  + +          R
Sbjct: 135 TPGNHNSQVGVPITISEIAPEDEI------------------GVIELGMSEPGELTVIAR 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  I++     TN+G  HI+   TQ   +  K+ + ++ L +     +  DD + K    
Sbjct: 177 IAKIQMAV--ITNIGVTHIEQLGTQDNIYREKLTI-QDGLTEGGILFLNGDDQFLKSTKA 233

Query: 259 RAHNAGCRVLSVG------YQGKFIHLKK----VCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +    GCR +  G      Y+   +HL++      A   ++QV +            + G
Sbjct: 234 K---EGCRTIYYGTGENCDYRALNVHLEEGFPAFTAAFGQKQVPVR---------LAVMG 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NA+V+  +    GI      + LE       R +   T   GG   +D  + ++ 
Sbjct: 282 SHNVLNAMVSLAVAAECGIPMEKAAKCLEAFTGFRNRQQIYQT---GGITVIDDTYNASP 338

Query: 369 LEM 371
           + M
Sbjct: 339 VSM 341


>gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, putative
           [Chlamydophila psittaci 6BC]
          Length = 436

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 43/371 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ V+ DSR ++ G +F A+ G   DGH F+ QA   GA A VVS  Y    F     
Sbjct: 12  KKISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGDSF----- 66

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               ++VV++T + L              I+ +TG+ GK++  +F +     S +     
Sbjct: 67  -GLELIVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFL--SSVYRVYA 123

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            P S       +++LT P  + +A        +    + +  S     Q  L  ++    
Sbjct: 124 SPKS------YNSQLTVPLSLLMADG-----DEDFVILEMGVSEPKNMQDLLSIVEPEVA 172

Query: 208 SFTNLGRDHIDYHQTQ--QAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261
             TN+   H+     Q  Q     K  +      +LLPK+SP   Y         MK++ 
Sbjct: 173 VITNIADQHVMNFPDQGVQGIAEEKSHILRNSRVQLLPKDSPWYSY--------FMKQSV 224

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +A     +   +    + K +     K  V IS    D DF    P +    N L++  L
Sbjct: 225 SAEKFSFAFYDETADFYYKAI----RKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSL 280

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTI 379
              + +    ++     L + P RFE    + R G   ++ A+ +    MI  L  I   
Sbjct: 281 AWLLDVPVDRIIHSCCDLQLPPMRFE---QSVRNGIQIINDAYNACPEAMIAALDAIPNP 337

Query: 380 TS-GRIIVVFG 389
           +  G++I++ G
Sbjct: 338 SEGGKVILILG 348


>gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
 gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
          Length = 452

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 134/329 (40%), Gaps = 41/329 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I+ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +       
Sbjct: 21  DTDIDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGAGALLVSRKLDI------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P LVV +TR      A+ +  + P  ++A+TG+SGK+SV      I    G + + 
Sbjct: 74  --DLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECGNTLYT 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +            TP   Y    L      G  H    A +  L +          
Sbjct: 132 AGNLNNDIGVPMTLLRLTPEHQYAVIEL------GANHQGEIAWTVSLTRPEAA------ 179

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVM 257
               NL   H++   +      AK  +F  L P    AI+ AD+            ++V 
Sbjct: 180 -LVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PANGIAILNADNNDWLNWQSVIGDRKVW 237

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           + + N    + +  +    IH+       +  + T+     D D L PLPG   V NAL 
Sbjct: 238 RFSPN----LATSDFSATNIHITS-----HGTEFTLRTPVGDVDVLLPLPGRHNVANALA 288

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           A+ L +A+G     +   L KL  VPGR 
Sbjct: 289 ASALAMAVGAPLQAIKAGLAKLKAVPGRL 317


>gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
 gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
          Length = 453

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 481

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 167/387 (43%), Gaps = 39/387 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   G 
Sbjct: 31  KNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 89

Query: 69  EAIVVSSAYSLQDFSA-TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            A+       L D S      N  +++VD+T   L   A     +    ++ VTG++GK+
Sbjct: 90  AAV-------LWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKT 142

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  +      + +++  T    +F  +N +  P  +     L+   +  +  + +
Sbjct: 143 TTKDMIHAVLG----TQYRVHKTG--GNF--NNHIGLPLTV-----LAMPENTEIAVLEM 189

Query: 188 EASSHGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             S+ G     +D +  +A       TN+G  H+    +++    AK+ +   L  KE  
Sbjct: 190 GMSAKG----EIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDG 243

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +IY  D   + +++ A++   +    G    +  L+ V    +++    +++G +  F 
Sbjct: 244 VLIYIGD---EPLLQNAYSCQTKTYGTGTHNDY-QLQDVS--QSEEGTHFTIKGIENTFF 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NA+ A       GI      + L  L V   R E + T+S    I   Y 
Sbjct: 298 IPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 357

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFG 389
            +  S++  ++   ++   G+ ++V G
Sbjct: 358 ASPTSMKAAIQLTESLEGYGKKMLVLG 384


>gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1059]
          Length = 456

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 151/378 (39%), Gaps = 54/378 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    +     DSR I++G +FV + G + DGH FIP A AQGA A +          S
Sbjct: 20  QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------S 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR---- 139
               +    ++VD+        A     K   ++LAVTG++GK++    + Q+       
Sbjct: 69  ERPVAEGAYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLTTTYKT 128

Query: 140 ---SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  + +IG   T+    +D                 +   G  H+         D 
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167

Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD     +
Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLR-KDGLLIVPAD-----K 221

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++     A C+++  G     I L ++    N      +   +  D   P+ G++   NA
Sbjct: 222 IINEFLPADCKLVRFGPDAD-IFLTRLEERKNSLSFECNFLEERIDL--PVTGKYNATNA 278

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           ++AA   +  G+    + +   +L +   R E+    + G  I  D Y     ++ +IL+
Sbjct: 279 MIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILE 337

Query: 375 NIRTITS---GRIIVVFG 389
              TI +   GR + V  
Sbjct: 338 TFSTIPANPGGRKLAVLA 355


>gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 419

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 151/387 (39%), Gaps = 55/387 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN V +D+R    G +FVA++G   D H +I  A   GA AI+ S           +++N
Sbjct: 25  INGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEKMGAVAIIASKQ---------VKTN 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ VD+T   LS  A+         ++A+TG++GK++  + +  I            P
Sbjct: 76  LPVIKVDDTETALSTIATWHLNNIKPTVVAITGSNGKTTTKNMLANILNLK-------AP 128

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T        +N L  P  + + +     +      + + A+  G  +H  D         
Sbjct: 129 TLKTQG-NLNNHLGVPMTLLMLEPKHQFAV-----IEMGANHLGEIKHLRDITHPHIAVV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN     +D H  +   FN  ++   E+    S  I+  +  ++ ++            S
Sbjct: 183 TNT----LDAHIGEFGGFNNLVKAKGEIYHTNSQNIVNTNTTFTGDI------------S 226

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G  G         +  N  Q  ++++ +       L G+  + N+L A+    A+ ID 
Sbjct: 227 FGKDGDVF-----ASNINSHQFDLNIKNEKIAVSLQLLGQHNIENSLAASACAYALDIDI 281

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVV 387
             + + LEK     GR   +    R G   +D  Y  +  S+   +  + +   G  I V
Sbjct: 282 NTIKKGLEKTQAEKGRLTII---HRQGLTIIDDTYNASPQSMRAAIDALLSF-DGEKIAV 337

Query: 388 FGC----GGDRDQGKRPI--MGKIALD 408
            G     G D     + I  + K++LD
Sbjct: 338 LGSMAELGNDSKTFHQQIGKLAKVSLD 364


>gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
 gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
          Length = 456

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 155/383 (40%), Gaps = 64/383 (16%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  +N++  DSR I  G +F+ + G + DGH FI  A   GA A           FS
Sbjct: 20  EFDDVPLNQIEFDSRKITKGDLFLPLKGER-DGHDFIDMAFENGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  P L+V +  K   + A     K   +++AVTG++GK+S    ++ +       
Sbjct: 69  EKEIPGKPYLLVKDCLKAFQMLAQYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKT 128

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   T+    +D                 +   G  H+         D 
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KIVLEMGQDHMG--------DI 167

Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250
           H L  I K      T +G  H+++  +++     KM++ + +   +S  I+ A      D
Sbjct: 168 HLLSEIAKPHIAVVTLIGEAHLEFFGSREKIAEGKMQIIDGM---DSHGILIAPGDPIID 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            Y  E           ++  G   + I++K +     K  +T +    D     PL G++
Sbjct: 225 PYLPE--------NQMLIRFG-DNQEIYVKDIQ--ERKNSLTFTTNVLDRAITLPLSGKY 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA++AA +   + ++   ++E LE + +   R E+    + G  I  D Y     ++
Sbjct: 274 NASNAMIAAYVGKLLAVEDDDIIEALENIQLTKNRTEWKKA-ANGADILSDVYNANPTAM 332

Query: 370 EMILKNIRTIT---SGRIIVVFG 389
            +IL++  ++T    G+ I V  
Sbjct: 333 RLILESFSSLTPENQGKKIAVLA 355


>gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 459

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I++V++DSR +  G +F+A+ G + D H F   A+  GA A++VS    +         N
Sbjct: 30  ISDVTTDSRRVGNGSLFIALKGERFDAHDFFADAVKAGAGALLVSRVLDI---------N 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P +VV +TR  +   AS +  +    ++A+TG+SGK+SV      I ++ G + +  G
Sbjct: 81  FPQVVVKDTRLAMGKLASWVRQQSNARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAG 139


>gi|91977864|ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684320|gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 479

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 156/377 (41%), Gaps = 41/377 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A       A   
Sbjct: 26  RDVFGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALNAGAALAVVERAQ-----RAKFA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++ P+LVVD+    L         +    I+AVTG+ GK+S    ++ +    G +    
Sbjct: 81  ADAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTSTKEALRGVLGAQGETH--- 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQ-GVTHVS-VEASSHGLDQHRLDGIKL 204
              ++++SF  +N    P  +    A + Y   + G+ H   +E     +  H +     
Sbjct: 138 ---ASVASF--NNHWGVPLSLARCPADVRYAVFEIGMNHAGEIEPLVKMVRPHLV----- 187

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +   H+++    +A  +AK  +F  L+P  + A++  D+A  K +   A  AG
Sbjct: 188 ---IITTVEPVHLEFFSGIEAIADAKAEIFAGLVPGGT-AVLNRDNAMFKRLTDSARKAG 243

Query: 265 C-RVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             RV+S G   +        A+H +   V  ++ G+D  +   +PG     N+L      
Sbjct: 244 VGRVVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAAA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEM-----I 372
             +G D AL    L  +    GR      EF  + +      +D ++ +N   M     +
Sbjct: 304 ETVGADLALAALALSHVQPAAGRGVRRALEFGQSEA----TLIDESYNANPASMVAALGV 359

Query: 373 LKNIRTITSGRIIVVFG 389
           L  +     GR IVV G
Sbjct: 360 LGQVPVGPQGRRIVVLG 376


>gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
 gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
          Length = 453

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V            +
Sbjct: 21  DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQR---------EL 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++   LVV +T++ +    + ++ +     +A+TG+ GK++V   V  I  + G   + 
Sbjct: 72  EADCSQLVVADTKQAIGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131

Query: 147 IG--------PTSTISSFAQD 159
            G        P + + S A+D
Sbjct: 132 QGNFNNDIGVPLTLLRSTAED 152


>gi|261886110|ref|ZP_06010149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 277

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 12/139 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--SPIYLAKAL 174
           ++ +TGT+GK++ A F      RS    +++G + T  +F  D ++     +   + + L
Sbjct: 62  LIGITGTNGKTTTA-FAIAFGLRS--LGYKVGISGTRGAFICDQQIADQGLTSCQILETL 118

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           SY+      G  +  +E SSH + Q+R++G+      FTN+ +DH+DYH++   Y   + 
Sbjct: 119 SYIKQAKESGCRYFVMEVSSHAIAQNRIEGLNSALKVFTNVSQDHLDYHKSCSEYARVES 178

Query: 232 RLFEELLPKESPAIIYADD 250
             F++    +SP +I  DD
Sbjct: 179 SFFDD----DSPKLISGDD 193


>gi|261337529|ref|ZP_05965413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum
           DSM 20093]
 gi|270277931|gb|EFA23785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum
           DSM 20093]
          Length = 524

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 186/439 (42%), Gaps = 67/439 (15%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQ 134
           + +D+SA   +  P L+V+N  + LSL A+  Y  +P++ L V G +G       A F Q
Sbjct: 81  ATEDYSA--YTAAPGLIVNNATQALSLLAAAYY-DYPQDELTVIGITGTKGKTTTAYFTQ 137

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDN----------RLTTPSPIYLAKALSYLSSQGVTH 184
            +     L++   G  +  SS   DN           LTTP  +   + +      G+ +
Sbjct: 138 AM-----LNALSGGKCALFSS--NDNCIDGVHYVESDLTTPESLDAFRMMRQAREHGMEY 190

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS     +R+ G+      F N+  DH+    H T + Y   K     +++   S
Sbjct: 191 LVMEVSSQSYKVNRVYGLHFDVAGFLNISPDHVSPIEHPTFEDYLYCK----RQIIANTS 246

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY---------QGKFIHLKKVCAI---HNKQQ 290
             ++ AD  + + +++ AH     V   G          Q   + L  V A    H++  
Sbjct: 247 ALVLGADCDHVRLLLQDAHLHDVPVTLFGTEDSTLPDDGQSTPLGLVTVGAADERHDRFD 306

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFEF 348
           VT+  +         +PG+F   NA  A  L  A G+  ++ +  + L+++ +  GR E 
Sbjct: 307 VTVFGDPAG-SIALAMPGDFNYVNAAAAIALIEAAGVPFNADVAYKALDEVRIA-GRMET 364

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR----IIVVFGCGGDRDQGKRPIMGK 404
              +     + VDYAH   S+  +L  +  +  G+    I ++ G  G +   +R  M +
Sbjct: 365 TRDDESNTVVIVDYAHNGISVTSVLDYV-DLQWGQEQPSITLITGSAGGKALDRREEMVR 423

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--------NRIEAIRTAIEML 456
            A    D  I T D+P +E+P +   +I   +  +I+          +R +AI +AIE  
Sbjct: 424 AAEQRIDHFIFTTDDP-NEEPVQ---DICEHMASYIQAPDVRHSIILDRAQAIASAIEEA 479

Query: 457 NKQD-----VLVVAGKGHE 470
              D     V++  GKG E
Sbjct: 480 RADDSGRLHVILALGKGEE 498


>gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           zeae Ech1591]
 gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae
           Ech1591]
          Length = 453

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 161/379 (42%), Gaps = 64/379 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I++VS+D+R + AG +FVA+ G K D H +   A+  GA A++VS    ++         
Sbjct: 24  ISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVNYGAAALLVSKHLPIE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVVD+TR  L + A  +  +    ++A+TG+SGK+SV      I ++ G   +  G 
Sbjct: 75  VPQLVVDDTRLALGVMAGWVRQQSQARVVALTGSSGKTSVKEMTASILRQCGNVLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +F  +N +  P  ++ L     Y   + G  H+   A +  +       ++  A 
Sbjct: 134 -----NF--NNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAM-------VRPEAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD--------DAYSKEVMKR 259
              NL   H++   + +    AK  +F  L P +  AII AD        D  + + + R
Sbjct: 180 LVNNLAAAHLEGFGSLEGVAQAKGEIFGGL-PAQGVAIINADSNDEARWQDVLAGKTLWR 238

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGEF 310
                C  +   Y G                + IS  G DF             PLPG  
Sbjct: 239 FSPQECDGVDF-YAG---------------DIRISERGTDFVLHSPMGDIAVTLPLPGRH 282

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--S 368
            + NAL A  L +A+G     V   LE+L  V GR   +      G++ +D ++ +N  S
Sbjct: 283 NIANALAATALALAVGASLEAVKVGLEQLQAVSGRLFPIALAP--GKLLLDDSYNANVGS 340

Query: 369 LEMILKNIRTITSGRIIVV 387
           +   +  +  +   R++VV
Sbjct: 341 MTAAVHVLAEMPGYRVMVV 359


>gi|323705831|ref|ZP_08117403.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534827|gb|EGB24606.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 875

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 133/331 (40%), Gaps = 48/331 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I++VTGT+GK++    +  I +  G   + +G TST   +  D  +          A + 
Sbjct: 480 IISVTGTNGKTTTVRMISHILKIYG---YTVGMTSTDGIYVDDVCIYKGDNSGPKSARTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID  +T +     K  L 
Sbjct: 537 LADKNIDAAVLETARGGIVREGLGYDLADIGIITNISEDHLGIDGIETLEDLAFVK-SLV 595

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQ 290
            E + K+  +++ ADD  +  + KRA            +GK I    H   +    + + 
Sbjct: 596 VEAVKKDGYSVLNADDPMTPYIAKRA------------KGKIIYFSMHENNLTIKRHLEN 643

Query: 291 VTISVEGKDFDFLFPLPGE-------------------FQVYNALVAAGLCIAIGIDSAL 331
             ISV  KD D +    GE                   + V NA+ +   C  I I   +
Sbjct: 644 GGISVYLKD-DTIVIANGEIIPIVKVDEIPATLNGKVLYNVENAMASISACYGIKIPVNV 702

Query: 332 VLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   +   +      PGRF      S   R+ VDY H  + ++ ++++ R +   R+I V
Sbjct: 703 ISRGIRSFYCDENHNPGRFNIFNIGSF--RVLVDYGHNIDGIKKVIESARKLNPNRLIGV 760

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            G  GDR       +G+I  +  D   + +D
Sbjct: 761 IGVPGDRSDSSTLKVGEICGEGFDKVYIKED 791


>gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
 gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
          Length = 468

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 38/297 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R +Q G +FVA+ G++ DGH F+  AIA+GA   VV+  +++           P+
Sbjct: 33  ITTDTRTLQRGEVFVALQGDRFDGHDFVVAAIAKGALCAVVNREFAVS------HPEFPL 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T +     A     +    I+ VTG+ GK++    +  +    G           
Sbjct: 87  IPVADTLRAYQTLARSWRDRFSIPIIGVTGSVGKTTTKELISAVLSHHG---------KV 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             +F   N     + I + K L  L S     V  +++       D  R+   +   G  
Sbjct: 138 HKTFGNYN-----NEIGVPKTLLELRSDHDFAVIEMAMRGPGEIADLTRI--ARPTVGVI 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
            N+G  HI    ++ A   AK  L  E +P  S A++  D+   + +M  A        +
Sbjct: 191 VNVGTAHIGRLGSEDAIARAKCELLAE-MPDTSIAVLNHDN---RRLMSTATQVWSGTTI 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + G +G  +  + +         TI V G   +   PLPG     N L A  +  AI
Sbjct: 247 TYGLEGGILQGELLG------HETIRVAG--IELPLPLPGSHNASNFLAALAVLRAI 295


>gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           petrophila RKU-1]
 gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga petrophila RKU-1]
          Length = 426

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 183/455 (40%), Gaps = 75/455 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +S+ ++ G +FVA+ G + DGH FI +A+  GA A++            T+ S+  I +V
Sbjct: 12  NSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAE--------RKTVNSDR-IFLV 62

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +++   L+  A    G     ++ +TG+SGK++    +  + +            +  S 
Sbjct: 63  ESSVDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLK------------NKRSV 110

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F     + T   + L+  L+    + +  + + AS  G   H             N+G  
Sbjct: 111 FKTPGNMNTEYGLPLS-ILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGNA 169

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQ 273
           H+++  T++     KM + +      +   ++ D    +EV        C  + L  G +
Sbjct: 170 HLEFFGTRERIMETKMEIIKHSKENATAVTLFDDPDLRREV-------PCYRKTLFFGKE 222

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF---QVYNALVAAGLCIAIGID 328
           G    LK           TI+ E + FD LF   L G +   Q+ N  +AA LC+   + 
Sbjct: 223 GGDSVLKDWWYYEGS---TIA-EFEAFDSLFTVKLSGYWNGGQLLN--IAASLCVMRALG 276

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             + +  L  L  VPGRF       +   + VD  + ++      S+E +L+       G
Sbjct: 277 ETVDIFDLASLKTVPGRF---NVREKKDVLIVDDTYNASPEAFQTSIEALLR-----FPG 328

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEK 427
           R   V G     G+R +     +G+  L++ D   +    P            +S+DPEK
Sbjct: 329 RRFAVVGAMKELGERSKEFHEELGE-RLNVLDGVYIFLSEPEAEWIKSKKIILKSDDPEK 387

Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
           I  ++   +      + K +R   I   +EM  K+
Sbjct: 388 IAKDLASRVTEGDVVLFKASRAVRIEKVLEMFEKE 422


>gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
 gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
          Length = 458

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 31/334 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W    ++ VS+D+R IQAG ++V + G   +GH F+ +A  +GA A++ +      +  
Sbjct: 21  EWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKGAAAVLWA------ERE 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            T     P++VVD+T   L   A+R   +    ++ VTG++GK++    +  +      +
Sbjct: 75  GTPPEGVPVVVVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKDMIAALLS----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQ-HRLDG 201
            +++  T        +N +  P        L+ LS  +G     VE    G  +  RL  
Sbjct: 131 HYRVQKTEG----NLNNHIGVP--------LTLLSLDEGTEMAVVEMGMSGFGEIERLTM 178

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMK 258
           I K  A   TN+G  H+    +++    AK+ +   L        +Y  D    ++ V K
Sbjct: 179 IAKPDAAVITNIGESHLQELGSREGIAKAKLEILAGL--HHDGLFVYHGDEPLLTERVPK 236

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                       G Q  +              V  ++ G+      P+ G+  VYNAL A
Sbjct: 237 LPLPRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGR--TLFMPVLGKHHVYNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +    GID   +   L +L V   R E V T 
Sbjct: 295 IAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTK 328


>gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
 gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
          Length = 445

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
 gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
          Length = 444

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 164/374 (43%), Gaps = 64/374 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR ++ G +FVA+V ++ DGHL+I QA+A GA A++V   ++       I  +
Sbjct: 22  ITGVAFDSRQVKIGDLFVALV-SEHDGHLYIQQALANGAVAVLVDDQHA-------ITPD 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF-- 145
            P ++V +T   L+L     Y +   N  ++A+TG++GK++       I   +   +F  
Sbjct: 74  IPAIIVPDT--LLALQRLGQYRREMVNPKVIAITGSNGKTTTKDMTAAILS-TKFKTFKT 130

Query: 146 ------QIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                 +IG   T+ S   D   L     +     L+ LS   +  +++           
Sbjct: 131 PENYNNEIGVPMTLLSMPDDTEVLVVELGMDRPGQLTVLSHLVMPDIAI----------- 179

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                      T +G  HI++ QT+     AK+ + + L   +S  I+     + + ++ 
Sbjct: 180 ----------ITMIGEAHIEFFQTRDNIARAKLEITQGL---KSDGILLV--PFDEPLLT 224

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +A     R     Y G     +KV AI     VT +   +   F  P+ G + V NAL A
Sbjct: 225 QAAVKSDR----QYFG-----EKVSAIQALATVT-TFTFEQQKFAIPVMGRYNVMNALAA 274

Query: 319 --AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
             AG  ++I +  A +   L+   +   R E + T S+G  +  D Y     ++  +L  
Sbjct: 275 ISAGKLLSIDLKHAAL--ALKNFDLTKNRTERLVT-SQGVVLISDVYNANPTAVAAVLST 331

Query: 376 IRTITSGRIIVVFG 389
           ++++ + R  VV G
Sbjct: 332 LKSLPARRKYVVLG 345


>gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
 gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
          Length = 463

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 134/323 (41%), Gaps = 28/323 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +VS+D+R      +F A+ G   D H ++ QA+ QG  A+VV     +         +
Sbjct: 25  VEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVEQGCSAVVVERECDV---------D 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQICQRSGLSSF 145
            P L+V +TR  L   A  L  K     +A+TG+SGK++V    AS +Q++ Q      F
Sbjct: 76  VPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKTTVKEMTASILQKVVQDPDAVLF 135

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G      +F  +N +  P  +     L +        + + A+  G   + +D ++  
Sbjct: 136 TQG------NF--NNDIGVPLTL-----LRFEPKHQFAVIELGANHQGEIAYTVDLVQPD 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAG 264
                N+   H++   + +    AK  +++ L  K    + Y     + K   ++  +A 
Sbjct: 183 VALVNNVAAAHLEGFGSIEGVAQAKGEIYQGLNGKGIAIMEYEHSVLWKKYWHEQIGDAE 242

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            R+ S   +    + +++       Q  +   E  + +   P  G   V NA+ AA L +
Sbjct: 243 TRLFSTQGKKSDYYAQEIRLTETGSQFKLCCTEHGEIEINLPYLGLHNVSNAVAAASLAL 302

Query: 324 AIGIDSALVLEHLEKLHVVPGRF 346
            +G+    +   LEK   V GR 
Sbjct: 303 CLGVSLEQIKAGLEKKSYVKGRL 325


>gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 475

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 127/320 (39%), Gaps = 27/320 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   VS D+R + AG IFVA+VG   DGH  I +A+  GA  ++      ++D       
Sbjct: 35  RATGVSIDTRTLAAGDIFVALVGENSDGHAHITRALDAGAAVVIAHRDPGVEDAR----- 89

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              IL+VD+T   L+  A+    +    ++AVTG+ GK++    ++      G + + + 
Sbjct: 90  ---ILLVDDTLSALNAMAAFARTRFAGRMIAVTGSVGKTTTKDMLRHALGACGPTHWAVA 146

Query: 149 PTSTISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                   + +N    P  +    A A+  +   G+ +    A    + +  +  I  I 
Sbjct: 147 --------SYNNHWGVPLTLARLPASAMFCVCEVGMNNPGEIAPLAQMVRPDVAVITTIT 198

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G+       H+ +  + +A    K  L    LP++  AI+  D         +A N G R
Sbjct: 199 GA-------HLGHMGSLEAIAREKSDLIAA-LPRDGVAIVPDDVTGMAIFATQARNHGAR 250

Query: 267 VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + + G + G    ++      +       ++G         PG     NALVA     A+
Sbjct: 251 LWTAGTHPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRHMAGNALVALTAAYAV 310

Query: 326 GIDSALVLEHLEKLHVVPGR 345
           G D A  +  L       GR
Sbjct: 311 GADMACAVRGLADFRPGAGR 330


>gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
 gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
          Length = 453

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            +
Sbjct: 21  DRAISVVSTDSRQIPAEALFVALVGERFDAHDFASQAVIGGAVALLVER---------EL 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   + 
Sbjct: 72  DADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131

Query: 147 IG--------PTSTISSFAQDN 160
            G        P + + S A+D+
Sbjct: 132 QGNFNNDIGVPLTLLRSTAEDD 153


>gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
 gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
          Length = 458

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 137/330 (41%), Gaps = 33/330 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  A    N
Sbjct: 27  IQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESGAVATL-----WMKDV-ANPPEN 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V++T   L + A     +    ++ VTG++GK+S    V  +      + F++  
Sbjct: 81  LPVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----TKFKVQK 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +  A   
Sbjct: 137 TE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAII 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N     ++
Sbjct: 188 TNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNLMAETVT 245

Query: 270 VG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            G      Y    + L +    H K       + ++  F  P+ G+  VYN L +  +  
Sbjct: 246 FGDARANDYYPTTVTL-QATGTHFKMN-----KDENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+    + + L  L +   R E V T+S
Sbjct: 300 HFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329


>gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 464

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 147/364 (40%), Gaps = 31/364 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R +Q G +FVA+   + DGH F+ QA+ +GA A +VS           +  + P+
Sbjct: 26  VSIDTRTLQPGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------IPEGVPEDAPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+ +  L         +    ++ VTG+ GK+S    +  I +  G +       ++
Sbjct: 79  LIVDDVQTGLEALGHAARARTAARVVGVTGSVGKTSTKEMLASILETRGKTH------AS 132

Query: 153 ISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVS-VEASSHGLDQHRLDGIKLIAGSF 209
           ++S+  +N    P  +  + +   Y   + G+ H   +   +H    H         G  
Sbjct: 133 VASY--NNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAHQARPH--------VGLV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++   +       K  LF+ L    + AI+ AD  ++  +  RA   G +++ 
Sbjct: 183 TTVAAVHLEAFDSVAGIAAEKAALFDGLTDGGT-AIVNADIEHAGILRSRAQARGAKIVE 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G   +   L  V    +  +    V   +  F     G     NAL A   C+ +G+D 
Sbjct: 242 FGRMARDYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGALAACVELGVDL 301

Query: 330 ALVLEHLEKLHVVPGR-FEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRTITSGRII 385
              +  L     V GR    V     G RI  +D ++ +N  S+E  L  +      R I
Sbjct: 302 DQAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSMEAALDVLAASAGQRRI 361

Query: 386 VVFG 389
              G
Sbjct: 362 AFLG 365


>gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
 gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
          Length = 458

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 138/334 (41%), Gaps = 31/334 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W    ++ VS+D+R IQAG ++V + G   +GH F+ +A+ +GA A++ +      +  
Sbjct: 21  EWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAVQKGAAAVLWA------ERE 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            T     P++VVD+T   L   A+R   +    ++ VTG++GK++    +  +      +
Sbjct: 75  GTPPEGVPVVVVDDTLLALQRLAARYREQLGMKVIGVTGSNGKTTTKDMIAALLS----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQ-HRLDG 201
            +++  T        +N +  P        L+ LS  +G     VE    G  +  RL  
Sbjct: 131 HYRVQKTEG----NLNNHIGVP--------LTLLSLDEGTEMAVVEMGMSGFGEIERLTM 178

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMK 258
           I +  A   TN+G  H+    +++    AK+ +   L        +Y  D    ++ V K
Sbjct: 179 IARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGL--HHDGLFVYHGDEPLLTERVPK 236

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                       G Q  +              V  ++ G+      P+ G+  VYNAL A
Sbjct: 237 LPLPRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGR--TLFMPVLGKHYVYNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +    GID   +   L +L V   R E V T 
Sbjct: 295 IAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTK 328


>gi|134102298|ref|YP_001107959.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003739|ref|ZP_06561712.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|189029030|sp|A4FLV9|MURC_SACEN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133914921|emb|CAM05034.1| UDP-N-acetylmuramate--alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 490

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 151/388 (38%), Gaps = 45/388 (11%)

Query: 65  AQGAEAIVVSSAYSLQDF---------SATIRSNTPILVVDNTRKFLSLFASR----LYG 111
           AQGA   +   A +++ F         S  IR + P LV    R    L  +     L  
Sbjct: 65  AQGAHIALGHRAENIEQFDGDPTAVVVSTAIRRDNPELVAAQERGVPVLRRAEALAALMA 124

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYL 170
            H   +  V GT GK+S  S +    Q   L  SF IG     S     N       +++
Sbjct: 125 DH--RVACVAGTHGKTSTTSMLTVALQHCRLDPSFAIGGDLNESGA---NAHHGDGGVFV 179

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           A+A     S  V   SV                      TN+  DH+D+H T +AY    
Sbjct: 180 AEADESDGSFLVFAPSVAV-------------------VTNVEPDHLDHHGTAEAYTEVF 220

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HN 287
            R  E + P     I  ADDA +  +  +A  AG RV   G++       ++      H 
Sbjct: 221 QRFVERIEPG-GVLIACADDAGAALLADQAEAAGVRVRRYGHEVTADGDARMVGYRPEHG 279

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              VT+ V G   D    +PGE    NA+ A    + +G     +LE L     V  RFE
Sbjct: 280 SGVVTVEVSGDRLDVQVAVPGEHMAANAVAALLAGLELGAPLEGLLEGLAAFGGVRRRFE 339

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIA 406
           F G  + G R+Y DYAH    ++  L+  R +   GR++VVF                 A
Sbjct: 340 FKG-RADGVRVYDDYAHHPTEVDAQLRAARPVVGDGRLVVVFQPHLYSRTAAFSGEFATA 398

Query: 407 LDLADIAIVTDDNPRSEDPEK-IRAEII 433
           L LAD  +V D     EDP+  +  E+I
Sbjct: 399 LGLADEVVVLDVYGAREDPQPGVTGELI 426


>gi|312621430|ref|YP_004023043.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201897|gb|ADQ45224.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 455

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 148/362 (40%), Gaps = 49/362 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G E ++ ++A S +D    + +    L +    +FL L       ++ +N++A+ GT G
Sbjct: 59  HGDETVIYTAAIS-KDNPELLAAKRMNLKIYERAEFLGLLM-----RNFKNVIAIAGTHG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182
           K++  S +  I +++  +     PT  + +F +    N +       + +A  Y+ S   
Sbjct: 113 KTTTTSMIGYILKKANYN-----PTILVGAFVKQLGGNFVIGSKDYLVVEACEYVDS--- 164

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                               K   G   N+  DH+DY +   +      R F   +P   
Sbjct: 165 ----------------FLKFKPTIGVILNIDNDHLDYFKDIDS-IKESFRKFAMKIPSSG 207

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFD 301
             +   DD   K+V+ + H    +V+ +  + K  I    +   +N       V+ K+ +
Sbjct: 208 FIVANCDDKNVKDVISKLHT---QVVCISTKEKADIFADNIS--YNDGYYEFDVKNKNNE 262

Query: 302 FL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            L      +PG   VYNAL A  +   + I+S  + + L +      R E VG    G  
Sbjct: 263 ILAHIKLNIPGFHNVYNALAAFAVASKLRIESFTIEQTLSEFCGASRRLEKVG-EFNGIY 321

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV 415
           +Y DYAH    ++  L  ++ I+ G+++ +F          + ++ + A  L LAD  IV
Sbjct: 322 LYDDYAHHPTEIKATLATLKKISEGKVLAIF--QPHTFSRLKTLLNEFAESLKLADKVIV 379

Query: 416 TD 417
           TD
Sbjct: 380 TD 381


>gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 452

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 162/369 (43%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSCPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++   LP+   AI+ AD+            + V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAIMNADNNDWLNWQSIIGDRLVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G     +   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|225850179|ref|YP_002730413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
 gi|225646272|gb|ACO04458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
          Length = 419

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 161/387 (41%), Gaps = 61/387 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +++AVTGT GKS+ +  +  I    G     IG               TP         S
Sbjct: 81  SVIAVTGTDGKSTTSKLIHHII---GEEKADIG-----------GNYGTP--------FS 118

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            + S+G   V +E SS  +  +  +  +     F N   DH+D+H+    Y  +K RLF 
Sbjct: 119 DIVSEGKDTVVLELSSFQI--YSTEMFRPDIAVFLNFYPDHLDWHKKLLHYRLSKYRLFR 176

Query: 236 ELLPKESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             + +E PA++  DD   +   K+   +      L    +G         A ++  ++ +
Sbjct: 177 N-MKEEDPAVLNFDDQVVRNTPKKGKRYYFSLSPLPDNLEG---------AYYDGSEIVL 226

Query: 294 SVEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + G  F F      L G   + N + +       GID   + E L+    +P R E+VG
Sbjct: 227 KINGFKFKFGLSDIHLKGIHNIQNIMASVVTAYIYGIDPETIEERLKSFKPLPHRMEYVG 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIAL 407
           + + G   Y D   T  +++ + K +++    R+I++ G    GGD    +  ++  +  
Sbjct: 287 SIN-GVDFYNDSKAT--TVQAVKKAVQSFDGKRVILITGGINKGGDFSDLRDELLNSV-- 341

Query: 408 DLADIAIVTDDNPR--SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              ++ I+  D     S   + ++AEI   +          +A+ TA +   K DV++++
Sbjct: 342 --KEVFIIGRDRKSIYSMIKDYVKAEIKESLE---------DAVNTAFKKAEKGDVILLS 390

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
             G  +  +  N +++  +   I+R++
Sbjct: 391 -PGCASFDMFKNYQERGEIFKSIVRKL 416


>gi|258654049|ref|YP_003203205.1| UDP-N-acetylmuramate--L-alanine ligase [Nakamurella multipartita
           DSM 44233]
 gi|258557274|gb|ACV80216.1| UDP-N-acetylmuramate/alanine ligase [Nakamurella multipartita DSM
           44233]
          Length = 482

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 161/427 (37%), Gaps = 60/427 (14%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  G  A+VVS+A    +          I VV       +L   R         + V GT
Sbjct: 76  IPGGPTAVVVSTAVRPDNPEVVAARAAGIAVVRRADALAALMTDR-------RSVCVAGT 128

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK+S  S +    Q +GL  SF IG   T S     +       +++A+A     S+LS
Sbjct: 129 HGKTSTTSMLTVALQHAGLDPSFAIGGELTGSGLGAHHGQ---GDVFVAEADESDGSFLS 185

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                      S HG                TN+  DH+D+H T +AY      +F++ +
Sbjct: 186 F----------SPHG-------------AIVTNIEPDHLDHHGTAEAY----TAVFDQFI 218

Query: 239 PKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVT 292
            +  P    +I ADD  S  +  R      R+++ G     +    +         + V 
Sbjct: 219 ERIEPGGFLVICADDPGSAALAARVRLR--RLVTYGRAADAVVRLAVDPASDPATGEPVV 276

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +G        +PG+  + NA+ A    + +G+D+ L+   L     V  RFE  G  
Sbjct: 277 TLADGTAVPLRLTVPGDHMLLNAVAALAAGVELGVDADLLAAGLAGYTGVRRRFELKGV- 335

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           + G  +Y DYAH    +   L   R +    GR++VVF                 AL  A
Sbjct: 336 AGGVTVYDDYAHHPTEVAAQLAAARGVVPADGRLVVVFQPHLYSRTATFATEFGAALGTA 395

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D+ +V D     EDP      E I A +  G P       R  A R   E++   D+++ 
Sbjct: 396 DLVVVLDIYGAREDPRPGVTGELITAAVPAG-PDVRYHPERSTAARFVAEIVRAGDLVIT 454

Query: 465 AGKGHET 471
            G G  T
Sbjct: 455 MGAGDVT 461


>gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
 gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
          Length = 453

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQR---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|114327097|ref|YP_744254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315271|gb|ABI61331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 459

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 152/366 (41%), Gaps = 41/366 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R ++   +FVA+ G+  DGH     A+A+GA  ++           A      P 
Sbjct: 27  VSIDTRTLEPADLFVALQGDNGDGHDHAEAALARGAAGVL-----------AHRDGPGPR 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V++T   L         +    + AVTG+ GK++    +     R+ L+ F  GP   
Sbjct: 76  LLVNDTMSALQALGRFARDRFHGTVFAVTGSVGKTTTKEML-----RTALAPF--GPVH- 127

Query: 153 ISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +++A  N      P+ LA+    A S +   G+ H    A    L +  +  I      
Sbjct: 128 -AAYASYNNHWG-VPLTLARLPESARSCVVEIGMNHAGEIAPLAALARPHVAII------ 179

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T + R HI +  + +A  + K  LF  L   +  AI+ AD      +M +A  A  RV+
Sbjct: 180 -TTVERSHIGHLGSIEAIADEKAALFSGL-AADGVAIMPADSPMLPRLMAQA--APHRVM 235

Query: 269 SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G      + L+++ A  +  ++ I V G+        PG     NAL A     A G 
Sbjct: 236 TFGTDANSMVRLQQIEAATDSSRLDIVVRGQSLSCTIGAPGRHMAMNALAALSAVDAAGF 295

Query: 328 DSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGR 383
           D       LE  H + GR     +  N  G  + +D  Y  +S S+   L  +R   + R
Sbjct: 296 DPHPAAAALENFHALAGRGAKRSIALND-GQAVLLDESYNASSASIRAALDVLRLTPASR 354

Query: 384 IIVVFG 389
            IVV G
Sbjct: 355 RIVVLG 360


>gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           cholerae LMA3894-4]
          Length = 453

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
 gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
          Length = 459

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 165/404 (40%), Gaps = 43/404 (10%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           Q L +     L+   S+ P++        V +D+R +QAG +FVA+ G + D H F+ QA
Sbjct: 6   QALGWLPSARLVGDGSVKPLR--------VHTDTRSLQAGDLFVALKGERFDAHDFLAQA 57

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            AQGA A +     +         +  P L V +++  L   A+    +    ++AVTG+
Sbjct: 58  KAQGAVAAIAHHGLAA--------AGLPGLEVADSKLALGQLAAGWRSQFSLPLIAVTGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V   +  I +             +  +FA +  L     + L   L   +S  V 
Sbjct: 110 NGKTTVTQMIAAILR----------AWKSTQAFATEGNLNNDIGVPL-TLLRLRASHAVG 158

Query: 184 HVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V +  +  G    L      G+ L+     N  R+H+++  T +A       + +  L 
Sbjct: 159 VVELGMNHPGEIAYLAALAKPGVALV----NNAQREHLEFMATVEAVARENGSVLQA-LG 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+  ADD Y+   + R      RVL+    G      +     +  QV        
Sbjct: 214 TDGIAVFPADDDYT--AIWRGLAGARRVLTFAQTGPADVTAQAQWSGDCWQVAARTPAGP 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI- 358
            DF   + G   V NAL A    +A G+   ++   L +   V GR   + T     R+ 
Sbjct: 272 LDFPLHIAGRHNVKNALAATACALAAGVPLPVIAAGLSEFAPVKGRSRAL-TVRLANRVV 330

Query: 359 -YVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +D  + +N  S+   ++ +  + + R++V+   G   DQG +
Sbjct: 331 TLIDDTYNANPDSMRAAIEVLAELPAPRLLVMGDMGEVGDQGPQ 374


>gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter cryohalolentis K5]
 gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter cryohalolentis K5]
          Length = 482

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 6/108 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R I+ G IF+A+ G+  DGH ++  AIAQGA A +V+   +  D ++      P 
Sbjct: 51  IATDTRTIKPGDIFLALTGDNFDGHDYLDTAIAQGAVAAIVARPIATADANS-----IPQ 105

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
           LVV +TR  L   A+    +H    ++A+TG+SGK++    +  I  R
Sbjct: 106 LVVSDTRLALGQLAAYRRQQHQNLTVIAITGSSGKTTCKEMLGSIFGR 153


>gi|304314679|ref|YP_003849826.1| UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588138|gb|ADL58513.1| predicted UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 1002

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 127/312 (40%), Gaps = 48/312 (15%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG++++AG  TNL  DH+D  +    Y      + + L+  E   ++  DD     ++  
Sbjct: 187 DGLEIVAGVVTNLTPDHMDEFRDYDEYIERNFSI-KNLIAPEGVLVLCGDDPVIAGLLDD 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT------ISVEGKDFDF----------- 302
                  V  +G + K   + +  +   + QV+      + +EG +F             
Sbjct: 246 LEVKSV-VYGLGNERKVEFMDRTFSGSAEPQVSATDIDLMGLEGSEFTLKVSEIPTALCS 304

Query: 303 ---------------LFPL--------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                          + PL        PG F V NAL A  + + +G D   +   LE+ 
Sbjct: 305 MCGSLNCGEHDGVIHIGPLTERIKLRVPGLFNVENALAAITVALVLGFDIRDIKNALEEF 364

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             + GRFEF+     G  +Y+D AH   S+E + + I     GR+I+            +
Sbjct: 365 RGIKGRFEFI-DQVDGVPVYMDAAHNPESMEKLFEGIE--FKGRLIISLDNPDTLTVRDK 421

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML 456
             +G+I  + AD+ IV+  N  +   +   A  + G  G    I+  +  ++IR A+E+ 
Sbjct: 422 YRIGQILGERADVLIVSGKNETTGKIDMEAASEVEGGAGRDKTIKTESVYDSIRRALEIA 481

Query: 457 NKQDVLVVAGKG 468
            K D ++  G G
Sbjct: 482 EKGDTVLHLGPG 493



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 45/218 (20%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRL------------------FEELLPKESPAIIYA 248
           G  TN+ RDH+   +    Y   K  +                  F E L +E  A++Y 
Sbjct: 695 GVITNISRDHLSGGRRFSDYIECKREIIDTAEVIVLNADDPIVASFAEGL-REERAVLYG 753

Query: 249 DDAYS--------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             +          +E  K  +N      ++G+ G +   + VC     Q   +++E    
Sbjct: 754 IQSMESAPVMPEGRECPKCGNNLKYTRRTMGHLGDY---QCVCGYRRPQPEVMALEASAD 810

Query: 301 DFLFPL-----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            F   +           PG F VYNAL AA    ++G+D   ++  +E    V GRF+ +
Sbjct: 811 GFKLVIGSEMRNVKLRTPGIFNVYNALAAAAAAWSLGVDMDDIVRGIESFSGVRGRFQKL 870

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             +    R+ +DYAH    +  +++ ++  T GR+IVV
Sbjct: 871 MDSP---RVILDYAHNPAGVRAVMQELKG-TDGRLIVV 904


>gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
 gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
          Length = 453

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 460

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 159/370 (42%), Gaps = 39/370 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR IQ G +FVA+VG K D H F+PQ    GA A++VS     ++  A       +
Sbjct: 29  VNTDSRKIQPGELFVALVGEKFDAHDFVPQVAQAGAAAVIVSRLP--ENVEAL---GCGV 83

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T   L   A          ++ +TG++GK+S    V  + ++     +Q+   +T
Sbjct: 84  IEVPDTLLALQQLARAYRELLNPLVIGITGSNGKTSTKDLVAAVLRK----KYQV--CAT 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
           + +F  +N +  P  I     L          + +  + HG +   L GI +  A   TN
Sbjct: 138 LGNF--NNHIGLPLTI-----LRMEEGDNCAVLEMGMNHHG-EIAVLAGIARPDAAIITN 189

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  HI+Y  +++     K  L    +P     ++ A+D +S  +  R+H    RV+  G
Sbjct: 190 IGVAHIEYMGSREGIAQEKGTL-AAAVPHGGVVVLNANDDFSSSIAARSH---ARVVLAG 245

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAI 325
                +    V A   +     S    +FD         P+PGE  V NA +AA +    
Sbjct: 246 -----VGEGDVVATLTESGARGSFFSLNFDGRVVVAVHLPVPGEHMVGNAALAAAVGWHF 300

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGR 383
           G+    +   L ++ +  GR +      RG  +  D Y    +S+   LK +  +   GR
Sbjct: 301 GVVPQDIAAALGEVQLTKGRVQV--KFWRGVTVLDDSYNANPDSMRAGLKTLAALQIPGR 358

Query: 384 IIVVFGCGGD 393
            + V G  G+
Sbjct: 359 RVAVLGRMGE 368


>gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
 gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
          Length = 456

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 158/369 (42%), Gaps = 32/369 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R I  G +F+A+ G   D H F+  AIA GA A++V+         + + + 
Sbjct: 23  IDGVSTDTRAITEGQLFIALAGENFDAHDFLAPAIAAGATALMVAD-------ESKVPTG 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VVD+TR  L   A+    K    ++AVTG++GK++    V  I +    ++F    
Sbjct: 76  VPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKTTTKEMVAAILK----AAFGAAV 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLI 205
            ST  +   D  L    P+ L   L   +S     + +  +  G    L       + LI
Sbjct: 132 LSTRGNLNNDIGL----PLTL---LGLRASHRAAVIEMGMNHPGEIGYLAPIGAPTVALI 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN  R H++           K  +F   LP    A+I ADDAY+   + R    G 
Sbjct: 185 ----TNAQRAHLEGMGDLDEVAREKGSIFLG-LPANGVAVINADDAYAG--LWRGMAGGR 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V + G         KV     +  + +S    D   +  +PG     NA+ AA  C+A 
Sbjct: 238 PVRTFGIDNAADVSAKVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVAAAAACLAA 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
           GI    V+  LE    V GR +   T  +G  I  D Y    +S+   + ++   T GR 
Sbjct: 298 GIPMVAVIAGLEAFSGVKGRLQRR-TGKQGAEILDDTYNANPDSVRAGI-DVLAATIGRK 355

Query: 385 IVVFGCGGD 393
           ++V G  G+
Sbjct: 356 LLVLGDMGE 364


>gi|239621197|ref|ZP_04664228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515658|gb|EEQ55525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 517

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 64/468 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A V  + YS         + TP L+V++ RK +SL ++  YG +P+N L V G +G 
Sbjct: 75  GLAAYVAETEYSAA-------TATPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126

Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175
                 + F Q +     +++   G  +  SS           ++ LTTP  +   + + 
Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
             +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K   
Sbjct: 182 EAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCK--- 238

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQ 290
             +++      ++ AD  ++  + + A  AG  V +               V    +   
Sbjct: 239 -RQIIVNAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAH 297

Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGR 345
            +  +   D    D+   + G+F   NA  A  +  A+G+  D A  L  +E + +  GR
Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRIA-GR 356

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402
            E            VDYAH   S+  +L  +       + RI +V G  G++   +R  +
Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416

Query: 403 GKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAI 453
            + A + +A+     +D     D E I  +I   + G+I           +R+ AI  AI
Sbjct: 417 VEAAENRIANFIFTAEDT----DTEPI-IDICMEMQGYITNKDVVSTVISDRLTAITNAI 471

Query: 454 ----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495
                  ++ ++L++ GKG+E    + +  K +  D D  ++  + GL
Sbjct: 472 YDARAHADRFNILLIIGKGNE--RWIKDHRKHVPFDGDDHVVERMFGL 517


>gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
 gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
          Length = 450

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 144/365 (39%), Gaps = 47/365 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +D+R +  G +FVA+ G + DGH +  QA+A GA  ++     ++          
Sbjct: 25  VRGVGTDTRALAPGALFVALRGERFDGHDYARQAVAGGAALVIAERPVAV---------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +T +     A     +    ++AVTG++GK++    ++ +   +G     + P
Sbjct: 75  -PHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAGKTTTRELIRAVLATAGPV---LAP 130

Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY----LSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                   ++N +  P  +  L  A  Y    +  +G   ++  A     +         
Sbjct: 131 PGN-----ENNDVGVPKLLLQLTGAHRYCVVEMGMRGPGEIARLARCAAPN--------- 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI    +  A  +AK  L  E LP    A++  +D       +R H AG
Sbjct: 177 -VGVITNVGSAHIGRLGSHAAIADAKCELLAE-LPCSGIAVLNGEDERLLSTARR-HWAG 233

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             VL+ G     +       + +   V + V+G    F+ PLPG     N L A  +   
Sbjct: 234 P-VLTYGLDAGDV-------MGSFDGVHLHVDG--IAFIPPLPGRHNHLNFLAALAVARH 283

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++   V E L+ L +  GR   +        I   Y     S    L  +  +  GR 
Sbjct: 284 LGLELLQVRERLKDLQLPTGRSRVIALEGDVQLIDETYNSAPESARAALAWLAGL-PGRR 342

Query: 385 IVVFG 389
           I V G
Sbjct: 343 IAVLG 347


>gi|169335453|ref|ZP_02862646.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258191|gb|EDS72157.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
          Length = 466

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 33/314 (10%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138
           +SA IR N P  V    +  L L  S   G   ++ +  +AV+GT GK++ +S +  +  
Sbjct: 74  YSAAIRENNPERVEGKNKGILELERSVFLGLISRYYKRTIAVSGTHGKTTTSSLMSLVFL 133

Query: 139 RSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            + L  S  IG   T+     ++R+   S  ++ +A  ++ S    H     S H     
Sbjct: 134 NADLDPSISIG--GTLKKINGNSRVG-DSDYFVIEACEFVDS--FLH-----SRH----- 178

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                    G+  N+ +DH+DY            R F E+ PK+   ++  DD   + V+
Sbjct: 179 -------FVGTIQNIEKDHLDYFTGGIEQIKESFRKFAEITPKDGMLVVNGDD---ENVL 228

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDF--DFLFPLPGEFQVYN 314
                  C+++  G       + K             V +G +F   F   +PGE  V N
Sbjct: 229 DILDGLECKIVKAGLSDSNDFVAKNITYDKFGNPNFDVYKGGEFYHKFELNIPGEHNVLN 288

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL    +     ID  ++ +  ++      RFE  G       +  DYAH    L++ + 
Sbjct: 289 ALSVVAVSDFFMIDKEVINDSFKEFTGAKRRFEKRGI-VNDITVIEDYAHHPTELKVTID 347

Query: 375 NIRTITSGRIIVVF 388
             +     ++ V+F
Sbjct: 348 ACKNYEHNKLFVIF 361


>gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 462

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 15/144 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N V +DSR    G +F  + G + DGH F  QA  +GA AIV       +D  +    N
Sbjct: 26  VNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGALAIVAH-----RDLGSI--QN 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           TP+L VD+T K L         K    +L +TG++GK++    + ++ +    + F +G 
Sbjct: 79  TPVLAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEILAEVLK----TRFTVGK 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKA 173
                    +N+L  P  + + K 
Sbjct: 135 NHK----NWNNQLGLPLSLLMQKG 154


>gi|299533120|ref|ZP_07046505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
 gi|298718897|gb|EFI59869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
          Length = 634

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 139/357 (38%), Gaps = 69/357 (19%)

Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153
           L LFA  L G      +   +L +TGT+GK++V S   Q+ +  GLS   +  IGP+   
Sbjct: 232 LDLFAFALKGLREAHGYAPKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPSLLD 291

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +  A+ +  T P    L                 E SS  LD  R  G +  A +  N+ 
Sbjct: 292 TLSARIDAETLPQAWVL-----------------ELSSFQLDDCR--GFEPTAATVLNIT 332

Query: 214 RDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIY------------------ADDA 251
           +DH+D+H   QAY +AK  +F E    +L +E P ++                   A  +
Sbjct: 333 QDHLDWHGGMQAYADAKAHVFGEQALMVLNREDPVVMAMLPAPVAVPGKRGKTFQRAHVS 392

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---- 307
           +  ++ +R  + G  V++         +  +   H   + +      D   +  +P    
Sbjct: 393 FGGDMPRRPGDFGLEVVN--------GMTWLVRAHEADETSKGKNADDLHIVRLMPADAL 444

Query: 308 ---GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYA 363
              G     NAL A  L    G   A +L  L +    P R + VG   R G + Y D +
Sbjct: 445 RIRGRHNAINALSALALATGAGCTLAPLLYGLREYRGEPHRVQPVG---RVGDVEYFDDS 501

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             +N    +   +      RI+V+ G  G + Q   P+   ++  +    ++  D P
Sbjct: 502 KGTNVGATVAALMGLGPDHRIVVILGGLG-KGQDFTPLAAPVSRYVRAAVLIGQDAP 557


>gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora
           bispora DSM 43833]
 gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermobispora bispora
           DSM 43833]
          Length = 455

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 36/230 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F AI G++ DGH F  +A A GA A++ S              + P ++V
Sbjct: 34  DSRAVEPGSLFAAIKGSRADGHDFAQEACAAGAVAVLASRPV-----------DAPAVIV 82

Query: 96  DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            +    L+  A+ +  + P   ++ VTG+ GK++    +  + +R G +   +G      
Sbjct: 83  RDVVAALADLAAAVVAELPSVTVVGVTGSQGKTTTKDLLAGLTERIGPTVAPVG------ 136

Query: 155 SFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             + +N +  P  +  A   +      LS++ V H++           R+   ++  G  
Sbjct: 137 --SHNNEIGHPLTVLKADERTRFLVLELSARNVGHIAY--------LTRIAPPRI--GVV 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            N+G  HI     ++A   AK  L E  LP++  A++ ADD Y +E+  R
Sbjct: 185 LNVGAAHIGVFGGREAIAKAKGELVEA-LPEDGVAVLNADDPYVREMAGR 233


>gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 479

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 32/232 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR +  G +F A  G + DGH F  +A+A GA A++           AT     P 
Sbjct: 31  VVTDSRRVGPGSLFTAFAGERADGHDFAERAVADGAVAVL-----------ATRPVGVPA 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+    L   A  +  +     +A+TG++GK+S    + Q+ +R G + +   P   
Sbjct: 80  IVVDDVTAALGALARHVVERLGTTTVALTGSAGKTSTKDLIAQLLERKGPTVY---PEGN 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHR-LDG-IKLIAGSF 209
           +     +N +  P        L+ L + +   H+ +E  +  +   R L G +    G  
Sbjct: 137 L-----NNEIGLP--------LTALRADESTEHLVLEMGARYIGDIRYLTGLVPPRIGLV 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259
            N+G  H+    +++    AK  + E L   E    A++ ADD   + + +R
Sbjct: 184 LNVGTAHLGEFGSRERIAEAKGEMVESLPSGEEGGVAVLNADDPLVRAMAER 235


>gi|297516905|ref|ZP_06935291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 153

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 50/93 (53%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              P++ +    + LS  A R Y +  +N+  V
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFYHEPSDNLRLV 112


>gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
 gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
          Length = 461

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 140/353 (39%), Gaps = 32/353 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  E  ++ V +DSR I  G +F+ +VG + DGH +I  A+  GA   + +   +  D+ 
Sbjct: 22  QDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITSALEAGAAGCLTARVRT--DY- 78

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              R +   + V NT + L   A+    +     + +TG+ GK++    +  +       
Sbjct: 79  ---REDKFYIQVGNTERALRDLAAWYKDRFQIPFVGITGSVGKTTAKDMIAAVL------ 129

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           S +     T  +F  +  L    P+ L + L +    GV  + ++    G   +  D ++
Sbjct: 130 SVKYKVLKTEGNFNNNIGL----PLTLLR-LDHTHQVGVLEMGMDKP--GEIDYLSDIVR 182

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--H 261
              G  TN+G  HI+   +++  F AK  L   +  +    ++ ADD     +  +    
Sbjct: 183 PEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVVLNADDPMLTTLRGKTPVQ 242

Query: 262 NAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              C +     Y+ +      V  IH      I+    + D   P  GE  +Y  L+AA 
Sbjct: 243 AVFCGKAEDADYRAQVTGGDGVSHIH----CHITTPKMERDVKIPALGEHMIYPTLIAA- 297

Query: 321 LCIAIGIDSALVLEHLEK--LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
              A+G    L  + +E      VP R         G    +D ++ +N   M
Sbjct: 298 ---AVGEHFGLTPDEIEDGIARFVPTRMRMNVIQREGEITILDDSYNANPQSM 347


>gi|581175|emb|CAA39334.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli]
          Length = 124

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 50/93 (53%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D      
Sbjct: 20  RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              P++ +    + LS  A R Y +  +N+  V
Sbjct: 80  HGVPVIYLSQLNERLSALAGRFYHEPSDNLRLV 112


>gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 452

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 162/369 (43%), Gaps = 45/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    PI L + L++     V  + + A+  G     +   +  A   
Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  ++   LP+   AI+ AD+            + V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAIMNADNNDWLNWQSIIGDRLVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA 
Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +A+G     +   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  
Sbjct: 292 LSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349

Query: 379 ITSGRIIVV 387
           +   R++VV
Sbjct: 350 MPGYRVLVV 358


>gi|218290830|ref|ZP_03494899.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239188|gb|EED06389.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 463

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 136/330 (41%), Gaps = 45/330 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V S+A    +          I V+  +     L   R+        +AVTG  G
Sbjct: 62  EGADIVVHSTAVKQDNVELQAARALNIPVIHRSEMLARLMDDRVG-------IAVTGAHG 114

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +    +++GL  +F +G    + +   DN      P  +A+A           
Sbjct: 115 KTTTTSMIAFTMEQNGLDPTFIVG---GVVADLGDNAKAGKGPFVVAEA----------- 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKE 241
                 S G   H    I ++    TN+  DH++++  +   F   +R +E  +   P E
Sbjct: 161 ----DESDGSFLHYRPAIAVV----TNVEPDHLEHYDGK---FENLVRAYETFIRQIPSE 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              ++ ADD   +E+   A    CRV++ G+ +   I  + V       +  + V G+  
Sbjct: 210 GLLVMSADDDKLRELRSAAR---CRVVTYGFAEDADITARHVELGDRASRSDVLVNGEFV 266

Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             L   LPG+  V NAL A  +C+ +G+        L + H    RF+ V     GG + 
Sbjct: 267 GTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVVA--EMGGVLI 324

Query: 360 V-DYAHTSNSLEMILKNIRTITSGRIIVVF 388
           V DYAH    +   +   ++ T  RI+ VF
Sbjct: 325 VDDYAHHPTEIRATIAAAKS-TGRRIVAVF 353


>gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
 gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
          Length = 452

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R +  G +FVA+ G + D H F  +A A GA A++VS           +  +
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADKAKAGGAGALLVSR---------PLDCD 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G
Sbjct: 75  LPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMAAAILSQCGNTLYTAG 133


>gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 454

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 27/251 (10%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  L++  +   E  +  V++DSR +  G IFVA  G K DGH F  +A+  GA  +V+
Sbjct: 9   LLEGLAVNALAQCETPVTLVTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVL 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +           +     ++  D+    + L A+     HP+ ++ VTG+ GK++     
Sbjct: 69  NHPVE------GVPEEKSVICPDSYHAMMVLGANYRSQFHPK-VVGVTGSVGKTTTKQMT 121

Query: 134 QQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASS 191
                 + ++ F     STI +   Q+N L  P  ++ + K   Y     V  + +   S
Sbjct: 122 Y-----AAIAGF----GSTIKTEGNQNNELGLPRTMFRIGKETQY----AVVEMGM---S 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H  +  RL    +   G  T +G  HI    +Q+    AK+ +    LP+ +P ++  DD
Sbjct: 166 HAGEIERLSKCARPDVGIITCIGMSHIGNLGSQENICKAKLEICAG-LPEGAPLVLNGDD 224

Query: 251 AYSKEVMKRAH 261
            + ++ +   H
Sbjct: 225 PFLRKAVLPDH 235


>gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 475

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 27/229 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F A+ G   DGH +   A+  GA A++ +   S  D      +  P LVV
Sbjct: 34  DSREVRPGSLFAALPGEHVDGHDYARGAVEAGAVAVLATRPVSTPD------APVPALVV 87

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +    +   A  +  +    ++A+TG++GK+S    + Q+ QR G + +  G      S
Sbjct: 88  PDVVAAMGAIARAVVERLGTTVVALTGSAGKTSTKDLIAQLLQRHGPTVWTHG------S 141

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHR--LDGIKLIAGSFTNL 212
           F  +N +  P        L+ L +   T H+ +E  + G    R   D      G   N+
Sbjct: 142 F--NNEIGLP--------LTALRADTTTQHLVLEMGARGKGHIRYLTDLTPPRIGLVLNV 191

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259
           G  HI     ++    AK  L E L   E    A++ ADD   + +  R
Sbjct: 192 GTAHIGEFGGREQIAEAKGELVEALPSAEDGGVAVLNADDPLVRAMASR 240


>gi|23335414|ref|ZP_00120650.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|23465917|ref|NP_696520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum NCC2705]
 gi|189439084|ref|YP_001954165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum DJO10A]
 gi|227547592|ref|ZP_03977641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317483518|ref|ZP_07942503.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689471|ref|YP_004209205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|46577072|sp|Q8G4M3|MURE_BIFLO RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|23326625|gb|AAN25156.1| MurE [Bifidobacterium longum NCC2705]
 gi|189427519|gb|ACD97667.1| UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211847|gb|EEI79743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291516694|emb|CBK70310.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bifidobacterium longum
           subsp. longum F8]
 gi|316915042|gb|EFV36479.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320460807|dbj|BAJ71427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 517

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 64/468 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A V  + YS         + TP L+V++ RK +SL ++  YG +P+N L V G +G 
Sbjct: 75  GLAAYVAETEYSAA-------TATPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126

Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175
                 + F Q +     +++   G  +  SS           ++ LTTP  +   + + 
Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
             +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K   
Sbjct: 182 EAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCK--- 238

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQ 290
             +++      ++ AD  ++  + + A  AG  V +               V    +   
Sbjct: 239 -RQIIVNAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAH 297

Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGR 345
            +  +   D    D+   + G+F   NA  A  +  A+G+  D A  L  +E + +  GR
Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRIA-GR 356

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402
            E            VDYAH   S+  +L  +       + RI +V G  G++   +R  +
Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416

Query: 403 GKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAI 453
            + A + +A+     +D     D E I  +I   + G+I           +R+ AI  AI
Sbjct: 417 VEAAENRIANFIFTAEDT----DTEPI-IDICMEMQGYITNKDVVSTVISDRLTAITNAI 471

Query: 454 ----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495
                  ++ ++L++ GKG+E    + +  K +  D D  ++  + GL
Sbjct: 472 YDARAHADRFNILLIIGKGNE--RWIKDHRKHVPFDGDDHVVERMFGL 517


>gi|260891634|ref|ZP_05902897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
 gi|260858644|gb|EEX73144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
          Length = 464

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 174/406 (42%), Gaps = 74/406 (18%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F    N++ I  ++     IN +S +S+ +    IFVAI G    G+ F+ +A+ +GA A
Sbjct: 7   FQSFFNKVEISDLE-----INNISINSKELGKNDIFVAIRG----GNNFVNEALEKGAFA 57

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +  S    + +  A          V+++ +FL  FA          ++ +TG++GK++V 
Sbjct: 58  VYDSKTLKIDEKYAN-----RAFFVNDSIEFLQNFAREWRKNLDIKVIGITGSNGKTTVK 112

Query: 131 SFVQQICQR-------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
             +  +  +        G  +  IG   T+    +D++      I L   +S     G  
Sbjct: 113 DMIYHLLSQKYKGKKTEGNYNNHIGLPFTLLRAEEDDKF-----IILEMGMS-----GFG 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ES 242
            + +      L Q  L  I +I    TN+G  H+++ +T++  F AK     E++P  ++
Sbjct: 163 EIDL------LGQIALPDINVI----TNIGESHLEFLKTKENVFLAKT----EIIPYIKN 208

Query: 243 PAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF- 300
             +I  DD Y K V  +A N    + L++G        ++  +      V  +  G DF 
Sbjct: 209 TLVINGDDDYLKNV--KAENIEVVKALNLGSN----EFREKTSDFYYGDVHFNESGTDFF 262

Query: 301 --------------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                         ++   + GE  V N ++A  +    G++  ++ E ++ + +   RF
Sbjct: 263 LKYFGKICQSTVERNYKTNVLGEHNVLNLVMAIAVAKQFGMEDKIISEAVKNIGLTGMRF 322

Query: 347 EFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI-IVVFG 389
           + +     G   Y++ A+ ++  S+E  L+    I + R+ I+V G
Sbjct: 323 QII---ENGDTTYINDAYNASPMSMEKSLETFSQIYNDRLKIMVLG 365


>gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
          Length = 476

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 140/359 (38%), Gaps = 51/359 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW       VS D+R +QAG +FVA+  +  DGH F+ QA+ +GA A +VS         
Sbjct: 20  QW---NATGVSIDTRTLQAGDLFVALT-DVRDGHDFVKQALDKGAAAALVSH------VP 69

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             +  + P+L+V++ +  L         +    ++AVTG+ GK+S    +  +    G +
Sbjct: 70  PGVPEDAPLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKTSTKEMLLAMLSDQGRA 129

Query: 144 SFQI-------GPTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              +       G   T++   +D         +     ++ L+     HV++        
Sbjct: 130 HASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVAL-------- 181

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                         T +   H++           K  +FE ++P    AI+ AD   S  
Sbjct: 182 -------------ITTVAAAHLEAFDDITGIAVEKASIFEGVVPN-GVAILNADVDTSAI 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--PGEFQVY 313
           +M +A +   R ++ G  G    L +  A        +  E  +   L+ +  PG     
Sbjct: 228 LMAKAQDCRLRDITFGEHGYDFKLMR--ADLQGDTTVVRAEMGEVPILYKINSPGRHFAM 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           NAL A  +  A+  D AL L  L       GR+       +  RIY+D   T   +++I
Sbjct: 286 NALGAIAVMAALRTDVALALGSL-------GRWTPYKGRGQRERIYLDSVDTRLFVDLI 337


>gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
 gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
          Length = 466

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 32/372 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G +FVA+ G + D H FI   +A+GA A++VS     +D  A +    P 
Sbjct: 32  VHTDSRTVEPGDLFVALKGERFDAHDFIADVVARGAVAVLVS-----RDVDAGV----PA 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V  +TR  L    +    +     +AVTG++GK++V   +  I   +      +G    
Sbjct: 83  IVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAA------VGEDQR 136

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +   +A   L+    G+ H        G+ Q  +          
Sbjct: 137 LATGGNLNNDIGLPLTVLRLRATHRLAVLELGMNHPGETVYLAGIAQPTV-------AVV 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE--VMKRAHNAGCRV 267
           TN  R+H ++          +       LP +  A+   D+    +   + RA     RV
Sbjct: 190 TNAQREHQEF-MVSVEAVAHEHAAAIAALPADGVAVFPLDEESGGQHAAIWRAAAGTRRV 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G  G+      V  +   Q + +   G  F+    L G   V NAL A    +A G+
Sbjct: 249 LSFGTAGEADVQATVALVDGVQVMQVRAPGHAFEVHLGLLGTHNVRNALAATACALAAGV 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385
               + + L     V GR +    ++ GG + +D  + +N  S+   +  +    + R++
Sbjct: 309 QVPAIQQGLAAFKAVKGRLQV--KHTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAPRLL 366

Query: 386 VVFGCGGDRDQG 397
           V+   G   DQG
Sbjct: 367 VIGDMGEVGDQG 378


>gi|297521715|ref|ZP_06940101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 91

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 10/94 (10%)

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVL 462
            AD+A+VTDDNPR+E+P  I  +I+ G+   ++ G+      R EA+  A+    + DV+
Sbjct: 1   FADVAVVTDDNPRTEEPRAIINDILAGM---LDAGHAKVMEGRAEAVTCAVMQAKENDVV 57

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +VAGKGHE   IV N     S    + R +LG+I
Sbjct: 58  LVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 90


>gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis EO147]
          Length = 468

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 152/372 (40%), Gaps = 30/372 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G   D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +  +  +    +T
Sbjct: 81  LKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFAAAAGADAR---LAT 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +F  +N +  P  +    A   L+    G+ H      +  L +     + L+     
Sbjct: 138 AGNF--NNDIGLPLTLLRLTAAHRLAVVELGMNH---PGETETLARIAAPTVALV----N 188

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++  
Sbjct: 189 NAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAS--IWRVAATGNRIVDF 245

Query: 271 GYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              G        V  + +  ++ I       D      GE    NAL +    +A G+  
Sbjct: 246 ALHGAGHDTPAAVTGVLDGSRLAIDTPDGRIDVQLNALGEHNARNALASTAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385
           A + + LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R++
Sbjct: 306 AAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365

Query: 386 VVFGCGGDRDQG 397
           V+   G   D+G
Sbjct: 366 VIGEMGEVGDEG 377


>gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
 gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
          Length = 452

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 129/317 (40%), Gaps = 23/317 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V++D+R + AG +FVA+ G + D H F+ QA   GA A++VS   +          +
Sbjct: 24  VDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKEGGAGALLVSRKLA---------CS 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G + +  G 
Sbjct: 75  LPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGQCGKTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +N +  P  +     L          + + A+  G     +   +  A   
Sbjct: 135 L--------NNDIGVPMTL-----LRLTREHEFAVIELGANHQGEIAWTVSLTRPEAALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL   H++   +      AK  +F  L P++  AI+ AD+           +      S
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFTGL-PQDGIAILNADNNDWLNWQSVIGDRQVWRFS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               G       +         T+       D L PLPG   + NAL AA L +A+G   
Sbjct: 241 PNAAGSDFTASDIQVTSGGTAFTLRTPQGSIDVLLPLPGRHNIANALAAAALAMAVGAGL 300

Query: 330 ALVLEHLEKLHVVPGRF 346
             V   L KL  VPGR 
Sbjct: 301 DAVKAGLAKLQAVPGRL 317


>gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 464

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 136/359 (37%), Gaps = 59/359 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R +Q   +FVA+   + DGH F+ QA+ +GA A +V+           + ++ P+
Sbjct: 26  VSIDTRTLQPDDLFVALKAAR-DGHDFVAQALEKGAAAALVTH------IPDDVAADAPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI----- 147
           L+VD+ +  L         +    ++ VTG+ GK+S    +  I    G +   +     
Sbjct: 79  LIVDDVQTALEALGRAARDRCKARVVGVTGSVGKTSTKEMLATILSDQGRTHASVASYNN 138

Query: 148 --GPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G   T++   +D         +  P  I      + L+ Q   HV++           
Sbjct: 139 HWGVPLTLARMPRDTEYAVIEIGMNHPGEI------APLARQARPHVAL----------- 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                      T +   H++  ++     + K  +FE  L     AI+ AD  ++  +  
Sbjct: 182 ----------VTTVAAVHLEAFESVAGIAHEKAAIFEG-LEAGGTAIVNADLDHTDILRT 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G  ++  G       L  V        VT    G+   F     G     N L A
Sbjct: 231 CAARHGAVIVDFGRTASDYRLTGVTQSPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRI-YVDYAHTSNSLEM 371
              C+A+G+D    +  L K   V GR    G   R     GG+I  +D ++ +N   M
Sbjct: 291 LAACVALGVDLDAAIAGLAKWAPVTGR----GVRERLALPDGGQIELLDDSYNANPTSM 345


>gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
 gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
          Length = 458

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 137/336 (40%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVKKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 ATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYIPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V  +S
Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDS 329


>gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
 gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
          Length = 466

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 162/378 (42%), Gaps = 40/378 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +DSR ++ G +FVA+ G + D H F+   +A+GA A++VS    +         + 
Sbjct: 30  SRVHTDSRTVEPGDLFVALKGERFDAHDFLADVVARGAAAVMVSRKVDV---------DV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L+V +TR  L   A+          +AVTG++GK++V   +  I   +      +G  
Sbjct: 81  PALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNGKTTVKEMIAAIFAAA------VGEG 134

Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             +++    +N +  P  +   +A   L+    G+ H        G+ Q  +        
Sbjct: 135 DRLATGGNLNNDIGLPLTVLRLRAHHKLAVLELGMNHPGETIYLAGIAQPTV-------A 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNA 263
             TN  R+H ++  + +A  +         LP +  A+   D     AY+  + ++A  A
Sbjct: 188 VVTNAQREHQEFMVSVEAVAHEHASAIAA-LPADGVAVFPVDAESGGAYAA-IWRQA--A 243

Query: 264 GCR-VLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           G R VLS G       ++   ++ N  QV  ++   + F     + G   V NAL A   
Sbjct: 244 GTRKVLSFGTDAS-ADVRATVSLENGVQVLDVTAPDRRFTLRLHVLGVHNVRNALAATAC 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379
            +A G+D A +   +     V GR +    ++  G + +D  + +N  S+   +  +   
Sbjct: 303 ALAAGVDVAAIQAGIAGFTAVKGRLQV--KHTPAGTVVIDDTYNANPDSMRAAIDVLAGF 360

Query: 380 TSGRIIVVFGCGGDRDQG 397
            + R++V+   G   DQG
Sbjct: 361 ATPRLLVLGDMGEVGDQG 378


>gi|300857309|ref|YP_003782293.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM
           13528]
 gi|300437424|gb|ADK17191.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM
           13528]
          Length = 457

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 109/282 (38%), Gaps = 37/282 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIY 169
           H  N+ AV GT GK++  S +  I  ++ L      PT  +     +   N     SP +
Sbjct: 109 HKYNV-AVAGTHGKTTTTSMLSCITLKADLD-----PTILVGGNLDNINGNVRIGNSPYF 162

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           + +A  Y  S      S+                   G   N+  DH+DY++      NA
Sbjct: 163 ITEACEYKGSFLKFFPSI-------------------GVILNIDADHLDYYKDIDDIQNA 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            ++ F  L+P++   +   DDA  K V+    N  C VL+ G     I  K +C    K 
Sbjct: 204 FIK-FANLIPEKGYLVGCVDDARMKNVIS---NVNCNVLTYGINAGDITAKNIC-FDEKS 258

Query: 290 QVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +  +   D         +PG+  + NAL +  + + + I +  +   LE       RF
Sbjct: 259 CASFDIYKNDVKISSLHLNVPGKHNILNALASTAVSLILDISTDNIKMGLENFKGTHRRF 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           E  G   +G  +  DYAH    ++  L         RII VF
Sbjct: 319 ELKG-KKQGITVIDDYAHHPTEIKATLNAAINYPHKRIICVF 359


>gi|264680248|ref|YP_003280158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
 gi|262210764|gb|ACY34862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
          Length = 634

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 139/357 (38%), Gaps = 69/357 (19%)

Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153
           L LFA  L G      +   +L +TGT+GK++V S   Q+ +  GLS   +  IGP+   
Sbjct: 232 LDLFAFALKGLREAHGYAPKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPSLLD 291

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +  A+ +  T P    L                 E SS  LD  R  G +  A +  N+ 
Sbjct: 292 TLSARIDAETLPQAWVL-----------------ELSSFQLDDCR--GFEPTAATVLNIT 332

Query: 214 RDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIY------------------ADDA 251
           +DH+D+H   QAY +AK  +F E    +L +E P ++                   A  +
Sbjct: 333 QDHLDWHGGMQAYADAKAHVFGEQALMVLNREDPVVMAMLPAPVAVPSKRGKTFQRAHVS 392

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---- 307
           +  ++ +R  + G  V++         +  +   H   + +      D   +  +P    
Sbjct: 393 FGGDMPRRPGDFGLEVVN--------GMTWLVRAHEADETSKGKNADDLHIVRLMPADAL 444

Query: 308 ---GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYA 363
              G     NAL A  L    G   A +L  L +    P R + VG   R G + Y D +
Sbjct: 445 RIRGRHNAINALSALALATGAGCTLAPLLYGLREYRGEPHRVQPVG---RVGDVEYFDDS 501

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             +N    +   +      RI+V+ G  G + Q   P+   ++  +    ++  D P
Sbjct: 502 KGTNVGATVAALMGLGPDHRIVVILGGLG-KGQDFTPLAAPVSRYVRAAVLIGQDAP 557


>gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
 gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
          Length = 492

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 35/303 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P  W       VS DSR ++ G +FVA+ G   DGH ++  A+A GA A +VS       
Sbjct: 30  PGHW---MATGVSIDSRTLRPGDLFVALKGPNFDGHDYVGDALAHGAAAALVSR------ 80

Query: 82  FSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
               +    P+L+VD+T   L      +RL  +    ++AVTG+ GK+     + ++C  
Sbjct: 81  LPGNVPPEAPVLLVDDTLAALEDLGRVARLNAR--GKVIAVTGSVGKTGTKEAL-KLCLD 137

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTT--PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +       GPT     FA    L      P+ LA+     +  GV  + +  +       
Sbjct: 138 A------RGPT-----FATQGSLNNHWGVPLSLAR-FPADAHYGVFELGMNHAGEIGPLS 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+  ++      T +   H+++  + +   +AK  +FE + P  + AI+  D+ +   ++
Sbjct: 186 RM--VQPDVAIITTVEAVHLEFFASVEGIADAKAEIFEGMTPAGT-AILNRDNPHFARLV 242

Query: 258 KRAHNAG-CRVLSVGYQ-GKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             A   G  R+ S G Q G   HL + C++H     VT S+ G+   +   LPG   V N
Sbjct: 243 AAARTQGLTRIWSFGTQEGADAHLLE-CSLHATSSAVTASIRGERIQYCLSLPGRHHVLN 301

Query: 315 ALV 317
           +L 
Sbjct: 302 SLA 304


>gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101]
          Length = 456

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 147/349 (42%), Gaps = 49/349 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  + +DSR +Q G +FV +VG + DGH F+ QA A G +A VV         +  +   
Sbjct: 27  VGPICTDSRQLQGGELFVPLVGERFDGHGFLGQAAALGVQAAVVQRGR-----AGDVPPG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
               +VD+T       A     +    ++AVTG++GK++    +     R+ L    +GP
Sbjct: 82  LLHWLVDDTLDAYQQLALLHRRQLVAPVVAVTGSAGKTTTRELI-----RAALGP--LGP 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLDQHRLDGIKLIA- 206
               SS  ++N +    P+ L KA       G  H  V VE    GL +  +D +   A 
Sbjct: 135 VMA-SSGNENNDIGV--PLTLLKA-------GTEHRAVVVEMGMRGLGE--IDRLSRTAQ 182

Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+G  HI    +++A   AK  +  +L P +   +I A D   ++ ++   + 
Sbjct: 183 PDVAVITNIGTAHIGRLGSREAIATAKCEITSQLKP-DGLLVIPAGDPLLEQAIQAVWSG 241

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             RV  V   G   +    +    ++    +SV G+      PL G     N L+A  + 
Sbjct: 242 --RVQRVALAGDPGVDQADLLGELDETNDLLSVRGERIR--LPLAGRHNARNLLLAVAVA 297

Query: 323 IAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSR---GGRIYVDYAHTSN 367
             +G+     L  L  L V VPG     G N R   GG   +D  + ++
Sbjct: 298 QELGVG----LPALADLDVEVPG-----GRNRRLQLGGLRVLDETYNAS 337


>gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
 gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
          Length = 451

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 160/371 (43%), Gaps = 47/371 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+D+R + AG +FVA+ G + D H F  QA+  GA A++V     L         
Sbjct: 23  EITVVSTDTRTLGAGALFVALRGERFDAHDFCEQAVQAGASALLVERELPLA-------- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV ++ K L      +  +    +LA+TG+ GK++V      I +  G       
Sbjct: 75  -IPQLVVTDSLKGLGRLGKLVRERINPKVLAITGSCGKTTVKEMATAILRNEGEV----- 128

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--GVTHVSVEASSHGLDQHRLDGIKLIA 206
             +T  +F  +N +  P  +   +     +    G  H    A +  L        K  A
Sbjct: 129 -LATAGNF--NNEVGVPLTLLRLEPQHKFAVMELGANHPGEIAWTTSL-------AKPDA 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+   H++   + +  F+AK  +FE  L +   AI+ AD+ +  +  +R       
Sbjct: 179 AIINNVAAAHLEGFGSLEGVFHAKSEIFEG-LSEGGTAIVNADNEFWPKWRERGIQC--- 234

Query: 267 VLSVGYQGKFIHLKKV------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             S+  Q +  H + +      CA    + V ++ +G +      +PG   V NAL AA 
Sbjct: 235 AFSIEGQSQPFHARNLVLNERGCA----EFVMVTPQG-ELSLTLAIPGRHNVANALAAAA 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            C+A+G     V   LE++  V GRF        GG   VD  + + S+E +L  I  +T
Sbjct: 290 GCLALGASLGSVKAGLEQMAPVKGRF---CVQRWGGLTLVDDTYNA-SVESVLAGIDALT 345

Query: 381 S--GRIIVVFG 389
           +  G  ++VFG
Sbjct: 346 AMGGFKVLVFG 356


>gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
 gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
          Length = 453

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQR---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   +
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130

Query: 146 QIG--------PTSTISSFAQDN 160
             G        P + + S A+D+
Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153


>gi|150015283|ref|YP_001307537.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901748|gb|ABR32581.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 880

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 165/388 (42%), Gaps = 43/388 (11%)

Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           LY + P+NI  +++TGT+GK++    +  + ++ G +   +G TST   +  +  +    
Sbjct: 470 LYDEEPKNIPVISITGTNGKTTTTRLISHVLRKMGSN---VGMTSTDGVYLNEKCIHKGD 526

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY---HQTQ 223
                 A S L ++ V    +E +  GL +  L          TN+  DH+     +  +
Sbjct: 527 DSGFNSARSILMNKDVDVAVLETARGGLVKRGLAYELADVAIITNITNDHLGLDGINSIE 586

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVG 271
           +  F     L  E +  +   ++ ADD YSK V+ R                    ++ G
Sbjct: 587 ELSFTKA--LVGEAVKDDGFVVVNADDKYSKTVINRFSAEKIYFAKDKENPLIQENIANG 644

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
               F+   K+C I+NK++  I V  ++    +    E+ + NA+ A    + + +D  +
Sbjct: 645 KIAVFVEDDKICVINNKKKYEI-VSTRELPISYNGTLEYNIENAMAACAGLVGLEVDYCM 703

Query: 332 V----LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIV 386
           +    ++   K     GRF      +R  R+ +DYAH       I+ ++R I     +I 
Sbjct: 704 ISKGFMDFGLKNEDNSGRFNMYNYLNR--RVILDYAHNIEGYRAIISSLRKIKGDNDLIG 761

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR- 445
           V G  GDR       +G+I  +  D  ++ +D  +     +   EI   +   I K N+ 
Sbjct: 762 VIGIPGDRKDDIGYAIGEICANNFDKIVIKEDKDKR---GRKSGEIADILEKSILKTNKN 818

Query: 446 ---------IEAIRTAIEMLNKQDVLVV 464
                    ++A++ AI++ NK D++VV
Sbjct: 819 ANLKICLDEVQALKYAIDISNKGDIIVV 846


>gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 458

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 136/336 (40%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVE 75

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                N P++ V++T   L + A     +    ++ VTG++GK+S    V  I      +
Sbjct: 76  NP-PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  ++    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QKGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         +   F  P+ G+  VYN L 
Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDETLSFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V T+S
Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329


>gi|212715570|ref|ZP_03323698.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660937|gb|EEB21512.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
          Length = 517

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 98/445 (22%), Positives = 186/445 (41%), Gaps = 38/445 (8%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQI 136
            DFSA  ++  P L+V++ RK +SL ++  YG +P+N L V G +G       A   Q +
Sbjct: 83  NDFSAATKA--PGLIVNDARKAMSLLSAAFYG-YPQNQLKVIGITGTKGKTTTAYLTQAM 139

Query: 137 ---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              C     + F             ++ LTTP  +   + +   +  G+ ++ +E SS  
Sbjct: 140 LNGCSDGKCALFSSADNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEVSSQA 199

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               R+ G+     +F N+  DHI    H T + YF+ K ++ +         ++    A
Sbjct: 200 YKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYFHCKRQIVKNC----RSLVLGTACA 255

Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGE 309
           ++  + + A  A   V +    +     +       +  +  I+VEG+    L   L G+
Sbjct: 256 HADLIRQDAAIADIPVTTFALGEASAADVTAWPESADHSRFAIAVEGEQIGSLSLQLDGD 315

Query: 310 FQVYNALVAAGLCIAIGID-----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           F   NA  A  +  A+G D     +   L ++E + +  GR E            VDYAH
Sbjct: 316 FNYANAAAAIAIAHAVGFDFHETAAKEALRNMEPVRIA-GRMEHFHDTKSNTIAIVDYAH 374

Query: 365 TSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              S+  +L  +          + +V G  G++   +R  + + A +  +  I+T ++  
Sbjct: 375 NYASVTALLDYVDQRYGKDDPEVTLVTGSAGNKAYDRRSEIVRAAQNRVNHLILTFEDTD 434

Query: 422 SEDPEKIRAEIIHGI--PGFIEK--GNRIEAIRTAIEM----LNKQDVLVVAGKGHETVH 473
            E  E +   ++  +  P    +   +R EA+ + + +     N+  ++++ GKG+E   
Sbjct: 435 DEPVEHVCQNMLDSVTNPDLDARIILDRTEAVESTVAIDRKNPNRLHIILIIGKGNE--R 492

Query: 474 IVTNGEKKMSVDCD--IIREILGLI 496
              N  K +  + D  I+  I GL+
Sbjct: 493 WFKNHGKHIPFEGDDHIVERIFGLV 517


>gi|258514343|ref|YP_003190565.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778048|gb|ACV61942.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 458

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 13/230 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TN+  DH+DY++T++    A  +   ++ P +  A++  DD   K +   +KR     C+
Sbjct: 179 TNIENDHLDYYKTEEKITEAFSKFIRKI-PSDGMAVLCTDDRQLKHMSTQLKRP----CK 233

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAI 325
             SV        ++ +     K +V +   G     L   +PG   + NAL    +   I
Sbjct: 234 TYSVKSTDADYTIRNMITDGPKSKVEVYENGTLLGILELLVPGLHNISNALAVVAVGRHI 293

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D   + E L        RF+ +G      ++  DYAH  + +   LK  R   +GRII
Sbjct: 294 GLDFDKIAEALSTFKGAQRRFQLIGIEKEV-QVVDDYAHHPSEIRATLKAARQAHAGRII 352

Query: 386 VVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433
            VF      R Q      G+ A   AD+ IV+D     E P E + A +I
Sbjct: 353 AVFQPHRYSRTQHLYEQFGE-AFGDADVVIVSDIYSAGEKPIEGVHAGLI 401


>gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
 gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
          Length = 453

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 9/116 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKG 126


>gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310]
 gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310]
          Length = 824

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 158/363 (43%), Gaps = 31/363 (8%)

Query: 29  KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +I  + +DSR +      +F A+V ++ +GH +IP+   +G    VVS+     D    +
Sbjct: 23  QIGFILTDSRSLCFPEETLFFALVTDRNNGHHYIPELYQRGVRNFVVSAVPVGYD---KL 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 L V +TRK L   A R   +    I+ +TG++GK+ V  ++ Q      L S Q
Sbjct: 80  YPEANFLKVVDTRKALQRLAERRRDEFDIPIVGITGSNGKTMVKEWLYQ------LLSPQ 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T +  S+  ++++  P  ++L   ++  +  GV    +  S  G      D I+   
Sbjct: 134 FYVTRSPRSY--NSQIGVPLSVWL---MNEQTQVGVFEAGI--SKPGEMNALRDIIQPTI 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRAHNAG 264
              TNLG    D HQ        K R  E+L L  ++  +IY ADD    +V+      G
Sbjct: 187 AVLTNLG----DAHQENFGLIEDKCR--EKLILFHDAETLIYPADDEIISKVITEYDYPG 240

Query: 265 CRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            R+  S+  +     +K V        VT   +GK+  +  P   E  V N++V A + +
Sbjct: 241 ERLYWSMKDKEAPFFVKFVEKKETMTTVTYIYKGKEDWYSLPFIDEASVVNSIVCAIVSL 300

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIRTIT 380
            +G+   ++ + +++L  V  R E V     G  +  D Y    NSL++ L   N R   
Sbjct: 301 HLGVTPDVLDQRMQQLEPVAMRLE-VKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDH 359

Query: 381 SGR 383
            GR
Sbjct: 360 QGR 362


>gi|254821552|ref|ZP_05226553.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           intracellulare ATCC 13950]
          Length = 492

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 84/198 (42%), Gaps = 21/198 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ +  AY +      + L P  +  ++  DD  +  + +R    G RVL 
Sbjct: 189 TNIETDHLDFYGSAGAYVDVFDAFVDRLAPGGA-LVVCVDDPGAAALARRTAELGIRVLR 247

Query: 270 VGYQGKFIHLKKVCA--IHNKQQVTISVE----GKDFD-------FLFPLPGEFQVYNAL 316
            G  G  +  + + A  +  +QQ T +V       D D           +PG     NA+
Sbjct: 248 YG-SGASLPGEPLAATLLSWQQQGTEAVAQIQLAPDLDPEQRPRVMRLSVPGRHMALNAM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILK 374
            A    + IG     VL+ L     V  RFE VGT   G   R++ DYAH    +   L 
Sbjct: 307 GALLAALEIGAPVDAVLDGLAGFEGVRRRFELVGTAGNGQPVRVFDDYAHHPTEIVATLA 366

Query: 375 NIRTITS----GRIIVVF 388
            +RT+      GR I VF
Sbjct: 367 AVRTLLEQSGDGRSIAVF 384


>gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 455

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 130/301 (43%), Gaps = 41/301 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V+ DSR I    +FV + G + DGH FI  AIA GA A +    +  +        N
Sbjct: 24  ISSVAFDSRKINENALFVPLKGER-DGHDFINSAIANGAVATLWEKGHPNK------PDN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ VD+T   +   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  FPVVEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDG-IKL 204
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L   +K 
Sbjct: 133 TQ--ANF--NNEIGVP--------MTILEMKPTTEILV--LEMGMDRAGQLHHLSSLVKP 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +G  HI++  ++    +AKM + + L  KE    IY  D     + +RA    
Sbjct: 179 DVCVITMIGEAHIEFFGSRDKIADAKMEITDFL--KEDGEFIYNGD--EPLLRQRAEKIS 234

Query: 265 CRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               + G+  Q     L+    +H+   VT S E K   F  P+ G+  V NA+  A +C
Sbjct: 235 QAKSTFGFNDQDTIYALEFKSYMHHASFVTSSSEQK---FSIPMIGKHNVSNAM--AAIC 289

Query: 323 I 323
           +
Sbjct: 290 V 290


>gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 461

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 138/334 (41%), Gaps = 38/334 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++KI  VS DSR I  G  FV + G   DGH FI  A  +       +  ++    + T 
Sbjct: 21  DKKIGRVSIDSRDIGPGDFFVPLAGEHTDGHRFIAAAAEK-----GAAGCFAAFSKNVTH 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                ++ V++  + L   ++    K    ++AVTG+ GK++    +      +   S +
Sbjct: 76  PEGMTVISVEDPEQALQDLSAFYRRKFQLPVVAVTGSVGKTTTKDMI------AAALSPE 129

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +    T  +   +N L  P        L+ L S      + EA+   +       I L+A
Sbjct: 130 LKTLKTEGNL--NNHLGVP------LMLTRLDS------TYEAAVLEMGMSGYGEIDLLA 175

Query: 207 -------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+G  H++   +++    AK  L   L   +  A++ AD+     ++  
Sbjct: 176 KLALPTVAVITNIGESHLEMLGSREGIARAKCELLGHL-AADGVAVVNADEPL---LVPH 231

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALV 317
               GCRV++ G+ +   +    +      ++  I  EG    + + PLPG   +YN + 
Sbjct: 232 IKGLGCRVITFGFDEHATVRCTDIINDEAGKRAIIEQEGFAPLEVVPPLPGRHNIYNLMA 291

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           A  +   +G+D +++ E   ++ +   R E V T
Sbjct: 292 ALAVGRLLGVDDSVLTEGFSRVRLSGMRLETVTT 325


>gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
 gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
          Length = 466

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 153/345 (44%), Gaps = 43/345 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I  G +FVA+ G   DGH F+ +A+  GA A +V   ++         +   +
Sbjct: 29  VCTDSRTIAPGQLFVALKGENFDGHDFVEKALQAGAAAALVERGFN------PTAAGQCL 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-QR------SGLSSF 145
           L VD+T K L   A+      P  I+AVTG++GK+S    + Q+  QR       G  + 
Sbjct: 83  LRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQVLGQRFEVHKTKGNLNN 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T+ +   ++++        A   ++YL++     V+V                 
Sbjct: 143 HIGLPLTLLALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAV----------------- 185

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H+    + +A   AK  LF+ L P E+ A +  DD     +   A    
Sbjct: 186 ----ITNVGPAHLGPLGSIEAVAAAKAELFQALGP-EAVAAVNLDDPL---LAPWADKLP 237

Query: 265 CRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLC 322
           CRV++ G   K     + V A  ++Q  T+ +  +  + +    PG   V NAL AA + 
Sbjct: 238 CRVITFGLDPKAQARARDVSAFGSRQAFTMEIGDQPAERVRLAAPGLHNVRNALAAAAVG 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +G+++  + + +E      GR E V T  +GG + +D  + +N
Sbjct: 298 AGLGLEAWQIKDGVEAFTPTKGRLENVFT--KGGPLLIDDTYNAN 340


>gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1056]
          Length = 456

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 161/406 (39%), Gaps = 55/406 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    +     DSR I+   +FV + G + DGH FIP A AQGA A +          S
Sbjct: 20  QFENVALRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------S 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140
               +    ++VD+        A     K   ++LAVTG++GK++    + Q+   S   
Sbjct: 69  ERPVAEGAYILVDDVLMAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKT 128

Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  + +IG   T+    +D                 +   G  H+         D 
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167

Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD     +
Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD-----K 221

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++     A C+++  G     I L ++    N      +   +  D   P+ G++   NA
Sbjct: 222 IVNEFLPADCKLVRFGPDAD-IFLTRLEERKNSLSFECNFLEQRIDL--PVTGKYNATNA 278

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           ++AA   +  G+    + +   +L +   R E+    + G  I  D Y     ++ +IL+
Sbjct: 279 MIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILE 337

Query: 375 NIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              TI +   GR + V     +     + + G +   L +  IVTD
Sbjct: 338 TFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382


>gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 453

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 9/116 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            
Sbjct: 20  EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           + +    LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G
Sbjct: 71  LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKG 126


>gi|298293104|ref|YP_003695043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
 gi|296929615|gb|ADH90424.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
          Length = 479

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 154/374 (41%), Gaps = 35/374 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I  VS D+R +Q G +F AI G+  DGH ++  A  +GA   VV      +D   T+ 
Sbjct: 27  RAIGGVSIDTRTLQPGDVFFAIRGDNSDGHAYVGMAADRGAALSVVE-----RDRVGTLP 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L VD+    L        G+    I+ VTG+ GK++    +        L+    
Sbjct: 82  EGAALLAVDDVLGALQAAGRAARGRTRARIVGVTGSVGKTTTKEALL-------LALGAD 134

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-- 205
           GPT   S+ + +N      P+ LA+ +   S+ GV  + +   +H  +   L  +K++  
Sbjct: 135 GPTHA-SAASYNNHWGV--PLSLAR-MPASSAYGVFELGM---NHAGEIEPL--VKMVRP 185

Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +   HI      +A  +AK  +F  + P  + A++  D+ + + +   A  AG
Sbjct: 186 HVAVITTIEPVHIAQFPNVEAIADAKAEIFTGVEPGGA-AVLNRDNPHFERLAAAARAAG 244

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGL 321
            + + VG+ +      + VC     Q  T + +  G+   F   LPG   V NAL     
Sbjct: 245 IQNI-VGFGEAADAQARLVCVKLQAQSSTANADIMGETVSFKIGLPGRHIVQNALAVLAA 303

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEM-----ILKN 375
              +G D  L    L  L   PGR        +GG    +D ++ +N   M     +L  
Sbjct: 304 ARLVGADLCLAAMALSSLGPPPGRGVRTTLGVKGGFATLIDESYNANPASMRAALAVLGT 363

Query: 376 IRTITSGRIIVVFG 389
                 GR + V G
Sbjct: 364 APVEGRGRRLAVLG 377


>gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 461

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R      +F A+ G K DGH ++ +A+AQG  A+VV     +         +
Sbjct: 25  IESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEAVAQGCTAVVVDHPCEI---------D 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P LVV +TR  L   A+ L  +     +A+TG+ GK++V      I QR+ 
Sbjct: 76  VPQLVVKDTRLALGRLAAWLRRELEPLTVAITGSCGKTTVKEMTAAILQRTA 127


>gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 440

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 156/381 (40%), Gaps = 62/381 (16%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  +  +N++  DSR I+ G IF+ + G + DGH FI  A   GA   ++S       FS
Sbjct: 20  QLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA---IIS-------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140
                   +LV DN   F  L A     K    ++AVTG++GK++    +  +  +    
Sbjct: 69  EKEVEQAHLLVDDNLLAFQKL-AKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKFKT 127

Query: 141 ----GLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  + +IG   TI     D  +L     +     + +LS      ++V        
Sbjct: 128 YKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKPELAV-------- 179

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELLPKESPAIIYADDA 251
                         T +G  H+++  +++     KM     L  EL+    P I    +A
Sbjct: 180 -------------ITLIGEAHLEHMGSRENIAKGKMGITAGLHGELIAPADPII----NA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +  +          +++  G  G+ + + K+  + +K+++T      D     P+PG++ 
Sbjct: 223 FIPD--------NQKIIRFGLPGEDLFITKL--VEHKEKLTFETNFLDESITIPVPGKYN 272

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA++AA + +  G+  A + + L+++ +   R E+    +    +   Y     ++ +
Sbjct: 273 ATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLLSDVYNANPTAMRL 332

Query: 372 ILKNIRTI---TSGRIIVVFG 389
           IL+  + I    +GR I V  
Sbjct: 333 ILETFQAIPKNENGRKIAVLA 353


>gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK150]
          Length = 456

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 161/411 (39%), Gaps = 65/411 (15%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78
           Q+    +     DSR I+ G +FV + G + DGH FI  A  QGA A      V   AY 
Sbjct: 20  QFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATLSERPVAEGAY- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                         ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 78  --------------ILVDDVLTAFQRLAKYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            S       G  + +IG   T+    +D                 +   G  H+      
Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD 
Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLR-KDGLLIVPAD- 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +++     A C+++  G     I L ++    N      +   +  D   P+ G++
Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRLEERKNSLSFECNFLEQRIDL--PVTGKY 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA++AA   +  G+  A + +   +L +   R E+    + G  I  D Y     ++
Sbjct: 274 NATNAMIAAYAALQEGVSEAAIAQAFSELKLTRNRTEWKKAGN-GADILSDVYNANPTAM 332

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +IL+   TI +   GR + V     +     + + G +   L +  IVTD
Sbjct: 333 RLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382


>gi|332799095|ref|YP_004460594.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332696830|gb|AEE91287.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 468

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 140/335 (41%), Gaps = 55/335 (16%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+ +VVSSA   +  ++   I SN P++   +    LSL  +      P+  +A+TG 
Sbjct: 63  EGADIVVVSSAIPKANPEYIRAIESNIPVI---HRADMLSLLMT------PKKGIAITGA 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  I +++G       PT  I     D          L K   YL ++   
Sbjct: 114 HGKTTTTSMISLIMEKNGFD-----PTVIIGGELND----IGGNATLGKG-EYLVAEAD- 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               + S   L  H    I +I    TN+  DH+DY++   +   A  + F + + K+  
Sbjct: 163 --ESDGSFMKLHPH----IAVI----TNIENDHMDYYKNMNSMKKA-FKKFIDNVNKDGF 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I   D+ + +E++K   N     + + Y   F+           + V ++     FD  
Sbjct: 212 IIFGNDNKHVQELVKET-NKEYYTVGINYPSDFM----------AKNVKMNGLITHFDVC 260

Query: 304 FP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           F           +PG   + NA  A  +   IGID   ++E ++    V  RF+ + ++ 
Sbjct: 261 FREKLLGKVELHVPGLHNILNATTAIAVGNRIGIDMEGMIEAIKTFRGVQRRFQII-SDI 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           RG ++  DYAH    ++  L+  R     +I  +F
Sbjct: 320 RGIKVIDDYAHHPTEIKATLRAARNCNPKKIYAIF 354


>gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
 gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
          Length = 458

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 137/336 (40%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 ATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYIPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V  +S
Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDS 329


>gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
 gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
          Length = 451

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 134/324 (41%), Gaps = 44/324 (13%)

Query: 13  ELINQLSIFPMQWRERKINEVSS----DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +LI  L   P+   E  + +VSS    D+R I+ G +F+A  G K DGH FI  AIA+GA
Sbjct: 9   QLIEVLLARPVNISEAALTQVSSGIQTDTRMIKPGEVFLAFRGEKFDGHEFISSAIARGA 68

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +V   Y             P+L V NT +           +    ++ VTG+ GK++
Sbjct: 69  IAAIVDDDYE--------NPGLPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +    G         + + ++   N     + I + K L  L+++   +  +E
Sbjct: 121 TKELIAAVLGTKG---------NVLKTYGNYN-----NEIGVPKTLLELNAEH-DYAVIE 165

Query: 189 ASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +  G  Q  +  +  IA    G  TN+G  HI+   +++A   AK  L  E +PK+S A
Sbjct: 166 MAMRGRGQ--IAELAQIARPTIGVITNVGTAHIELLGSEEAIAEAKCELLAE-MPKDSVA 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  D+        +  +    VL+ G  G  +    V          + V G       
Sbjct: 223 ILNHDNPLLMATAAKFWSG--EVLTYGLSGGDVQGSLV------DNAIVEVAG--LRLPL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGID 328
           PLPG     N L A  +   +GI+
Sbjct: 273 PLPGRHNATNYLAALAVAKVLGIE 296


>gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
 gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
          Length = 453

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V            +
Sbjct: 21  DRAISAVSTDSRTIPAEALFVALVGERFDAHDFASQAVIGGAVALLVEH---------EL 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   + 
Sbjct: 72  DADCSQLVVADTKQALGQLGAWVHTQCKTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131

Query: 147 IG--------PTSTISSFAQDN 160
            G        P + + S A+D+
Sbjct: 132 QGNFNNDIGVPLTLLRSTAEDD 153


>gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
 gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
          Length = 458

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 136/336 (40%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVE 75

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                N P++ V++T   L + A     +    ++ VTG++GK+S    V  I      +
Sbjct: 76  NP-PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  ++    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QKGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         +   F  P+ G+  VYN L 
Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDETLSFYLPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V T+S
Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329


>gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 440

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 156/381 (40%), Gaps = 62/381 (16%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  +  +N++  DSR I+ G IF+ + G + DGH FI  A   GA   ++S       FS
Sbjct: 20  QLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA---IIS-------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140
                   +LV DN   F  L A     K    ++AVTG++GK++    +  +  +    
Sbjct: 69  EKEVEQAHLLVDDNLLAFQKL-AKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKFKT 127

Query: 141 ----GLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  + +IG   TI     D  +L     +     + +LS      ++V        
Sbjct: 128 YKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKPELAV-------- 179

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELLPKESPAIIYADDA 251
                         T +G  H+++  +++     KM     L  EL+    P I    +A
Sbjct: 180 -------------ITLIGEAHLEHMGSRENIAKGKMGITAGLHGELIAPADPII----NA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +  +          +++  G  G+ + + K+  + +K+++T      D     P+PG++ 
Sbjct: 223 FIPD--------NQKIIRFGLPGEDLFITKL--VEHKEKLTFETNFLDESITIPVPGKYN 272

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA++AA + +  G+  A + + L+++ +   R E+    +    +   Y     ++ +
Sbjct: 273 ATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLLSDVYNANPTAMRL 332

Query: 372 ILKNIRTI---TSGRIIVVFG 389
           IL+  + I    +GR I V  
Sbjct: 333 ILETFQAIPKNENGRKIAVLA 353


>gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R]
 gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 514

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 39/376 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI----------VVSSAYSLQ 80
           + V  DSR +  G +F+A+ G + DGH F   AI +GA A+          +V     +Q
Sbjct: 29  SSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREVDVPAIVVPPVKIQ 88

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           + +A I ++ P      VV+   +            H  N++A+TG++GK+S   F+  +
Sbjct: 89  ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATV 148

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             + G +    G  +            T    YL   ++ +S++G+ H+          +
Sbjct: 149 LGQDGPTVAPPGSFNNELGLPHTALRCTTDTKYL---VAEMSARGIGHI----------K 195

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSK 254
           H  +       +  N+G  H+    +++    AK  + E L  K++   A++ ADD +  
Sbjct: 196 HLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPF-- 253

Query: 255 EVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--G 308
            V + A     RV+      G   K  +     ++    + + ++  KD  +   L   G
Sbjct: 254 -VARMAPRTKARVVWFSTDAGQANKSDYWATSISLDAVARASFTLNTKDGSWPVALQVFG 312

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           E QV NAL AA + +  G+   LV+  LE           V T + G  I  D Y    +
Sbjct: 313 EHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMDVKTRADGVTIINDSYNANPD 372

Query: 368 SLEMILKNIRTITSGR 383
           S+   +  +    SGR
Sbjct: 373 SMRAGIAALAYTASGR 388


>gi|295835883|ref|ZP_06822816.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295825750|gb|EFG64450.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 18/226 (7%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHN-AGCRVLSVG 271
           H +Y   ++ Y +     FE  + K  P    +I AD   ++E+ +R    A   +++ G
Sbjct: 191 HANYASIEEIYES-----FETFVGKIVPGGTLVISADHEGARELTRRVRERADLTIVTYG 245

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   + ++KV       +VT++++GK   F   +PG    +NA+ A    +++G+   
Sbjct: 246 SAEDADVRVRKVSPRGLTSEVTVAIDGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLH 305

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L     V  R +  G  + G ++   YAH    +   L+ +R    GRI+VVF  
Sbjct: 306 NLASALRSYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQP 364

Query: 391 ---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432
                 ++ GK   MG+ AL LAD ++V D  P  EDP E + +E+
Sbjct: 365 HLFSRTQELGKE--MGQ-ALALADSSLVLDIYPAREDPIEGVTSEL 407


>gi|288818598|ref|YP_003432946.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787998|dbj|BAI69745.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752189|gb|ADO45672.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobacter thermophilus
           TK-6]
          Length = 452

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 115/297 (38%), Gaps = 75/297 (25%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKA 173
           +AV G+ GK++  S +  +   +G       PT  I      F  + RL     I     
Sbjct: 109 IAVCGSHGKTTTTSMIAHMVHEAGYD-----PTVIIGGVLQKFGSNARLGKDQLI----- 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      +S    S G     L  + +I    TN+ R+H+ Y++      +A +R 
Sbjct: 159 -----------ISEADESDGSFLKLLPTVAVI----TNIDREHLGYYKDLDEIKSAFLR- 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMK-------------RAH--------NAGCRVLSVGY 272
           F   +P     ++ ADD  S+EVMK              AH          GC    + Y
Sbjct: 203 FANSVPFYGFCVMNADDENSREVMKSVKAPLITFGIEREAHLMARNLSLEGGCYSFDLFY 262

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +GK +            ++ +SV G+             VYNAL    +C+ +GI  + +
Sbjct: 263 EGKPL-----------TRIHMSVAGRH-----------NVYNALAGIAVCLRMGISVSNI 300

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
            + LE       R EF G   +G  +Y DY H    +  ++K +R +    RI++VF
Sbjct: 301 KKALESFKNAERRLEFKGY-FKGAAVYDDYGHHPTEIRAVIKALREMYLQRRIVLVF 356


>gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
 gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
          Length = 445

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADD +    MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDVFC-HAMKRAGRE-VKWFSLEHKADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|116670132|ref|YP_831065.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
 gi|189028971|sp|A0JV95|MURC_ARTS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116610241|gb|ABK02965.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
          Length = 467

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 130/310 (41%), Gaps = 58/310 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTG 122
           AEA+V  SA         IR++ P L          L      A+ + G   + ++ V G
Sbjct: 76  AEAVVAGSA---------IRADNPELQAARAAGLPVLHRSEALAAAMAG---DRVVTVAG 123

Query: 123 TSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYL 177
           T GKS+  S V  + Q +GL  +F IG  + + S    N  +  S I++A+A     S+L
Sbjct: 124 THGKSTTTSMVTVLLQGAGLDPTFAIG--ANVPSLGV-NAASGTSDIFVAEADESDGSFL 180

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +   H++V                      TN+  DH+DY+ T +A +      F EL
Sbjct: 181 NYR--PHIAV---------------------VTNVEPDHLDYYGTAEAVYE-SFDSFTEL 216

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHN--KQQVTIS 294
           LP +   +  ADD  ++ + +R    G  RV++ G   +   L+    +H+     V +S
Sbjct: 217 LPADGVLVACADDPGARALAERTRTRGNTRVVTYG-TAEDAQLR----LHDGGPGDVWVS 271

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                F     +PG     NA  A  + + +G+        L        RFEF G   R
Sbjct: 272 TGAGRFALDLQVPGRHNALNAAAAFAVALELGVAPDAASGALAHFSGASRRFEFKG-EGR 330

Query: 355 GGRIYVDYAH 364
           G R+Y DYAH
Sbjct: 331 GVRVYDDYAH 340


>gi|118469061|ref|YP_888503.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium smegmatis
           str. MC2 155]
 gi|166224705|sp|A0R015|MURC_MYCS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118170348|gb|ABK71244.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 482

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 33/198 (16%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+  ++QAY  A    F E +      ++  DD  +  +  R    G RVL 
Sbjct: 189 TNIEADHLDFFGSEQAY-TAVFDSFVERIAPGGALVVCTDDPGAAALADRTDALGIRVLR 247

Query: 270 VGYQGKFI----------------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            G  G  +                H++ +   HN + V +SV           PG     
Sbjct: 248 YGSTGDNLAGTLLSWEQQGTGAVAHIR-LAGEHNPRAVRLSV-----------PGRHMAL 295

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A      IG  +  VL+ L     V  RFE VGT + G R++ DYAH    +   L
Sbjct: 296 NALAALLAAREIGAPTDSVLDGLAGFEGVRRRFELVGTAA-GARVFDDYAHHPTEVRATL 354

Query: 374 KNIRTI---TSGRIIVVF 388
           +  RT+     GR++V F
Sbjct: 355 EAARTVVDQNGGRVVVAF 372


>gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
 gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
          Length = 458

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 137/336 (40%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 ATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYIPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V  +S
Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDS 329


>gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
 gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
          Length = 458

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 137/344 (39%), Gaps = 49/344 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVE 75

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                N P++ V++T   L + A     +    ++ VTG++GK+S    V  I      +
Sbjct: 76  NP-PENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSILA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--------------EELLPKESPAIIYAD 249
             A   TN+G  H+    +++A   AK+ +               E LL    P +  A 
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAA 241

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +  +      A        +V  Q    H K      N+ + +         F  P+ G+
Sbjct: 242 ETVT---FGDARANDYYPTTVTLQSTGTHFK-----MNRDETS--------SFYLPVLGK 285

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             VYN L +  +    G+    + + L  L +   R E V T+S
Sbjct: 286 HNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329


>gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
 gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
          Length = 482

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 157/383 (40%), Gaps = 41/383 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R    V+ DSR ++   IFVA  G + DG+ F  +AI  GA A+V++     +  +   
Sbjct: 23  DRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVVMTRDPEDEVVAMAR 82

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                +L  D+  +FL   A     +    ++ VTG+ GK++    +     +     ++
Sbjct: 83  DRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDVLAACLSK----RYR 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQ-HRLDGI-K 203
           +  T+       +N +  P        L+ LS+   T + V E   +   +  RL    +
Sbjct: 139 VHATAG----NYNNLIGLP--------LTILSAPADTQMLVLEMGMNDFGEISRLTACAQ 186

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-------ESPAIIYADDAYSKEV 256
              G  T +G  HI    +++    AK  + E + P         S  +++ +D ++  +
Sbjct: 187 PTFGIITKVGTSHIGMLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDFTPYI 246

Query: 257 MKR-AHNAGCRVLSVGYQGKFIHLKKVCAIH------NKQQVTISVE-GKDFDFLFPLPG 308
           ++R A  AG  V+  G          VCA H       +    I+ E G  F     +PG
Sbjct: 247 IERYARPAGIDVVLAGTSTD----DDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA +   +G+ +  + E    L +  GR   V   + G R+  D Y  +  
Sbjct: 303 AQSVPNALFAAAVAHRLGVPAFEIDEAFASLEMT-GRRAQVRHAACGARVIDDSYNASPE 361

Query: 368 SLEMILKNIRTI-TSGRIIVVFG 389
           S+   L  + ++  SG  I V G
Sbjct: 362 SMAAGLDLLGSLPCSGTRIAVLG 384


>gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC7]
          Length = 494

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 22/133 (16%)

Query: 24  QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           QW      E+      +D+R IQAG +F+AI G + D H FI  A  QGA A +V     
Sbjct: 21  QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137
                  ++ + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I 
Sbjct: 78  ------VVKCDIPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131

Query: 138 QRSGLSSFQIGPT 150
                   QI PT
Sbjct: 132 S-------QIAPT 137


>gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
 gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
          Length = 450

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 45/341 (13%)

Query: 13  ELINQLSIFPMQWRERKINEVSS----DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +L+  L   P+   E  + +VSS    D+R I+ G +F+A+ G   DGH F+  AIAQGA
Sbjct: 9   QLLEVLCAQPINLSEAALTQVSSTIQTDTRRIKPGEVFLALRGENFDGHDFVSHAIAQGA 68

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +V S Y   D +        +L V +T +           +    ++ VTG+ GK++
Sbjct: 69  IAAIVDSDYENADVA--------VLQVRDTLQAYQQLGRWWRDRLNIPVIGVTGSVGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +    G          T  +F  +N +  P      K L  L ++   +  VE
Sbjct: 121 TKELIAAVLATEGRVH------KTFGNF--NNEIGVP------KTLLELDTEH-DYAVVE 165

Query: 189 ASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +  G  Q R   +  IA    G  TN+G  HI+   +++A   AK  L  E +P++S A
Sbjct: 166 MAMRGEGQIR--ELTQIARPNIGVITNVGTAHIELLGSEEAIARAKCELLAE-MPEDSVA 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  D+       ++  +    V++ G  G  I       + + Q + +     +     
Sbjct: 223 ILNHDNPLLMATAQQVWSG--EVVTYGLSGGDIQ----GVLTDNQTIKVG----EMRLPL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           PLPG     N L A  +   +GID +  L++  K+++  GR
Sbjct: 273 PLPGRHNASNFLAALAVAQVLGIDWS-TLQNGVKVNMPTGR 312


>gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC
           13032]
 gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC
           13032]
          Length = 514

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 39/376 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI----------VVSSAYSLQ 80
           + V  DSR +  G +F+A+ G + DGH F   AI +GA A+          +V     +Q
Sbjct: 29  SSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREVDVPAIVVPPVKIQ 88

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           + +A I ++ P      VV+   +            H  N++A+TG++GK+S   F+  +
Sbjct: 89  ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATV 148

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             + G +    G  +            T    YL   ++ +S++G+ H+          +
Sbjct: 149 LDQDGPTVAPPGSFNNELGLPHTALRCTTDTKYL---VAEMSARGIGHI----------K 195

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSK 254
           H  +       +  N+G  H+    +++    AK  + E L  K++   A++ ADD +  
Sbjct: 196 HLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPF-- 253

Query: 255 EVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--G 308
            V + A     RV+      G   K  +     ++    + + ++  KD  +   L   G
Sbjct: 254 -VARMAPRTKARVVWFTTDAGQAKKSDYWATSISLDAVARASFTLNTKDGSWPVTLQVFG 312

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           E QV NAL AA + +  G+   LV+  LE           V T + G  I  D Y    +
Sbjct: 313 EHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMDVKTRADGVTIINDSYNANPD 372

Query: 368 SLEMILKNIRTITSGR 383
           S+   +  +    SGR
Sbjct: 373 SMRAGIAALAYTASGR 388


>gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
 gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
          Length = 464

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 164/368 (44%), Gaps = 36/368 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR +  G +FVA+ G+  DGH F  QAIAQGA A+++S      D +  ++   P 
Sbjct: 25  VGTDSRSVTKGQLFVALKGDNFDGHSFAAQAIAQGAAAVLIS------DRTLNVQ---PA 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQICQRSGLSSFQIG 148
           ++VD+T + L   A+    K    + AVTG++GK++V    AS ++  C +         
Sbjct: 76  ILVDDTCQSLGELAAYWRSKFDIPLAAVTGSNGKTTVKEMLASILRAACDQ--------- 126

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
           P + +++    N     + I L   L  L+++    V+    +H  +   L  I K    
Sbjct: 127 PDAVLATVGNLN-----NHIGLPLTLLKLNARHRYAVAEMGMNHTGEISYLSRIGKPTVA 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N G  HI    + +A   AK  +FE  L  ++ A+I ADD ++   +  A     ++
Sbjct: 182 LINNAGNAHIGELGSFEAIARAKGEIFEG-LAADATAVINADDVFAPLWLDLAGQR--KI 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G + K     +     +   + I+          P PG   V NAL A    +A+G 
Sbjct: 239 MTFGLKNKADVTAQYQLHASASDIEITTPQGAVKVSLPTPGLHNVMNALAATSTALAMGA 298

Query: 328 DSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRII 385
               V   LE    V GR  +  G N   G + +D  + +N + M +  ++    SG  I
Sbjct: 299 SLQAVSIGLENYAGVKGRLQQKAGLN---GALVIDDTYNANPMSMKVAIDVLMAMSGEKI 355

Query: 386 VVFGCGGD 393
           +V G  G+
Sbjct: 356 LVLGDMGE 363


>gi|227548915|ref|ZP_03978964.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079004|gb|EEI16967.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 483

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 14/182 (7%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+DY  T + YF      F + +P     ++  DDA +    +RA   G  V 
Sbjct: 184 ITNIEPDHLDYFGTAEKYFEV-FDSFADRIPPGGHLVVCLDDAEAAACGQRARARGVNVF 242

Query: 269 SVGYQG---KFIHLKKVCAIHNKQ----QVTISVEG--KDFDFLFPLPGEFQVYNALVAA 319
             G      ++  +     I        +V +++ G  +   +   +PG+  V NA  A 
Sbjct: 243 GYGTAAAASRYPDIPAAAVITASDTTFAEVELTIGGVQRTVRYTLSIPGQHMVLNAAGAL 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR--GGRIYVDYAHTSNSLEMILKN 375
             C  +G D   + E L     V  RFE  G  T  R  G R+Y DYAH    +  +L  
Sbjct: 303 VACTLVGADPGKLAEGLTGFTGVRRRFELKGQLTGGRFAGVRVYDDYAHHPTEVTAVLTA 362

Query: 376 IR 377
            R
Sbjct: 363 AR 364


>gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 440

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 155/380 (40%), Gaps = 60/380 (15%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  +  +N++  DSR I+ G IF+ + G +  GH FI  A   GA   ++S       FS
Sbjct: 20  QLADLSVNKIEFDSRLIEKGDIFLPLKGARY-GHDFIEIAFDNGA---IIS-------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140
                   +LV DN   F +L A     K    ++AVTG++GK++    +  +  +    
Sbjct: 69  EKEVEQAHLLVDDNLAAFQTL-AKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKYKT 127

Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  + +IG   TI    +D                 +   G+ H         L Q
Sbjct: 128 YKTQGNHNNEIGLPYTILHMPEDTE-------------KLVLEMGMDHPGDIDFLSQLAQ 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR----LFEELLPKESPAIIYADDAY 252
             L  I LI       G  H+++  +++     KM     L  EL+    P I    +A+
Sbjct: 175 PELALITLI-------GEAHLEFMGSRENIAKGKMGITAGLHGELIAPADPII----NAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             E          ++   G  G+ + + K+  I +K+++T      D     P+PG++  
Sbjct: 224 IPE--------NQKISRFGLPGEDLFITKL--IEHKERLTFETNFLDESITIPVPGKYNA 273

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA++AA + +  G+  A + + L+++ +   R E+  + +    +   Y     ++ +I
Sbjct: 274 TNAMLAAYVGLHYGLTEAEINKALKEVELTRNRTEWKKSKNGADLLSDVYNANPTAMRLI 333

Query: 373 LKNIRTI---TSGRIIVVFG 389
           L+  + I    +GR I V  
Sbjct: 334 LETFQAIPKNENGRKIAVLA 353


>gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
 gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
          Length = 472

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 7/116 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR ++ G +FV I G   DGH F  +AI  GA A++VS       F A     
Sbjct: 26  VEGVGTDSRAVKPGSLFVCIPGETFDGHDFAVKAIEAGAAALLVSR----NPFDAV--PP 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSS 144
            P+++V++T K L   A     +  E  ++ +TGT+GK++V   + Q+  R GL++
Sbjct: 80  VPLILVEDTVKALGKLAHCWRERLGETRVIGLTGTAGKTTVKELLAQVLSRRGLTA 135


>gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 460

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 25/237 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++  V++DSR ++ G IFVA  G K DGH F  +A+  GA  +VV+           +
Sbjct: 22  EVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYVVVNHPVE------GV 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +   IL  D+    + + A+     HP+ ++ VTG+ GK++           + L+ F 
Sbjct: 76  PAEKAILCPDSYHAMMVMGANYRSQYHPK-MVGVTGSVGKTTTKQMTY-----AALAGF- 128

Query: 147 IGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKL 204
                TI +   Q+N L  P      + L  L S     V     SH  +  RL    + 
Sbjct: 129 ---GETIKTEGNQNNELGMP------RTLMRLESNTEYAVIEMGMSHAGEIDRLARAARP 179

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             G  T +G  HI    +Q+    AK+ +    LP+ +P ++  DD + +     AH
Sbjct: 180 DVGIITCIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDKFLRAAKLPAH 235


>gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
 gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
          Length = 458

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 137/336 (40%), Gaps = 33/336 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +      +
Sbjct: 75  ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F++  T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +
Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D           N 
Sbjct: 182 PNAAIITNVGEAHLMDLGSREAIAEAKLEIVAGL--QEGGVFVYNGDEPLLTNRVPEMNL 239

Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               ++ G      Y    + L +    H K         ++  F  P+ G+  VYN L 
Sbjct: 240 ATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYIPVLGKHNVYNTLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  +    G+    + + L  L +   R E V  +S
Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDS 329


>gi|152981679|ref|YP_001355246.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
 gi|151281756|gb|ABR90166.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
          Length = 853

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 129/323 (39%), Gaps = 53/323 (16%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++F     G+ P  ++AV GT+GK++    +  I Q    + +++G TST   + ++ R+
Sbjct: 458 TMFDEGDDGRIP--VVAVAGTNGKTTTVRLIAHILQG---NKYRVGMTSTDGVYIENKRI 512

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDH--IDY 219
            T        A + L    V    +E +  G+ +  L   +      TN+G  DH  +++
Sbjct: 513 DTGDCSGPRSARNVLMHPDVDAAVLETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNF 572

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-----------------SKEVMKRAHN 262
             T +     K  + + + P  +  +  AD                    S   +   H 
Sbjct: 573 ISTVEDLAVVKRVIVQNVAPNGTAVLNAADPMVANMAGSCPGSVTFFAQDSNHAVLATHR 632

Query: 263 A-GCRVLS------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           A G RVL       V  +GKF H  ++  I      T+                FQV NA
Sbjct: 633 AQGHRVLFQDGNVIVLSEGKFEHRIQLSDIPITHNGTVG---------------FQVENA 677

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + A G    +G+D  +VLE L          PGRF     + +G  +  DY H  +++E 
Sbjct: 678 MAAIGAAWGLGLDWNVVLEGLRTFENSASSTPGRFNIF--SHKGATVIADYGHNPDAIEA 735

Query: 372 ILKNIRTITSGRIIVVFGCGGDR 394
           + + +  + + R +VV    GDR
Sbjct: 736 LTRAVEGMPAKRRMVVISGAGDR 758


>gi|41407994|ref|NP_960830.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|48428301|sp|P61681|MURC_MYCPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|41396348|gb|AAS04213.1| MurC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 496

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TN+  DH+D++ +  AY        E L P  +  ++  DD  +  + +R    G RVL 
Sbjct: 189 TNIETDHLDFYGSADAYVAVFDAFVERLAPGGA-LVVCVDDPGAAALARRTAELGIRVLR 247

Query: 269 -SVGYQGKFIHLKKVCA--IHNKQQVT-----ISVEGKDFDFL---FPLPGEFQVYNALV 317
              G  G+    + + A  +  +QQ T     I + G+    L     +PG     NA+ 
Sbjct: 248 YGSGSHGQAPSGQPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHMALNAMG 307

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-------RIYVDYAHTSNSLE 370
           A    I IG  +  VL+ L     V  RFE VGT   GG       R++ DYAH    + 
Sbjct: 308 ALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTA--GGPAPSSTVRVFDDYAHHPTEIA 365

Query: 371 MILKNIRTI----TSGRIIVVF 388
             L  +RT+      GR I VF
Sbjct: 366 ATLAAVRTLLEQSGGGRSIAVF 387


>gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli]
 gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli K-12]
          Length = 452

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 137/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A  A A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGAAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +     +
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPERALV 181

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
                   NL   H++   +      AK  +F  L P+   AI+ AD+           S
Sbjct: 182 N-------NLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
 gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
          Length = 476

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 149/371 (40%), Gaps = 29/371 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + I  +S DSR I+ G  F AI G++ DGH F+  A+A GA   VV SA  L    +T R
Sbjct: 25  QDITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGTALANGASVAVV-SADKLDSLPSTGR 83

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                L+VD+    +   A     +    I+AVTG+ GK+     ++    RSG      
Sbjct: 84  ----YLIVDDPLAAMERLAVASRARSNARIVAVTGSVGKTGTKEALRLALGRSGKVH--- 136

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              ++++SF  +N      P+ LA+  + +   GV  + + A        R+  ++    
Sbjct: 137 ---ASVASF--NNHWGV--PLTLARMPADVDF-GVFEIGMSAPGEITPLVRM--VRPHVA 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHNAG 264
             T +   H+++  + +    AK  +F+ L P    AI+  D+     +M   K  H   
Sbjct: 187 FITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPG-GVAILNRDNNQFDLLMFLAKADHVQE 245

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R      Q      + V        V+  + G+   +     G   V+N+L      + 
Sbjct: 246 IRTFGEN-QNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGRHHVHNSLAVLTAVVE 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEM-----ILKNIRT 378
           +G + AL  E L  +    GR E  V     G    +D ++ +N   M     +L     
Sbjct: 305 LGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANPASMRAALSVLGEAEI 364

Query: 379 ITSGRIIVVFG 389
              GR I V G
Sbjct: 365 TPPGRRIAVLG 375


>gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 480

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 28/240 (11%)

Query: 27  ERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +RK+   V  DSR ++ G +F A+ G + DGH F  +A+A GA A++ +         A 
Sbjct: 24  DRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAARAVADGAVAVLAARPVPAAAADAP 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + S    +VV + +  L   A  +  +    ++A+TG++GK+S    + Q+ +R G + +
Sbjct: 84  VPS----IVVPDVQAALGALARAVVLRLDATVVALTGSAGKTSTKDLIAQLLRRHGPTVW 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHR--LDGI 202
             G        + +N +  P        L+ +S+   T H+ +E  + G    R   D  
Sbjct: 140 TPG--------SLNNEIGLP--------LTAMSADETTRHLVLEMGARGKGHIRYLTDLT 183

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKR 259
               G   N+G  HI     ++A   AK  L E  LP  +    A++ ADD   + +  R
Sbjct: 184 PPRLGLVLNVGTAHIGEFGGREAIAEAKGELVEA-LPAAAEGGVALLNADDPLVRAMATR 242


>gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 460

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  + +DSR +Q G +FV + G + DGH F+ +A ++GA AI+      L D SA I   
Sbjct: 25  VCRIQTDSRAVQPGDLFVCLSGERFDGHNFVDEAASKGASAIIAQQ--PLFDLSAGI--- 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            P+L+V +T   L   A          ++AVTG++GK+S    +  +  R G ++
Sbjct: 80  -PVLLVQDTLHALGQLAGYWRRTFGGTVVAVTGSAGKTSTKECIAGVLGRRGQAA 133


>gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1087]
          Length = 456

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 166/399 (41%), Gaps = 65/399 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I++G +FV + G + DGH FIP A AQGA A +          S    +    ++V
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------SERPVAEGAYILV 80

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGLSSFQIG 148
           D+        A     K   +++AVTG++GK++    +  +        +  G  + +IG
Sbjct: 81  DDVLTAFQRLAQYYLEKMQVDVVAVTGSNGKTTTKDMLAHLLATTYKTYKTQGNYNNEIG 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
              T+    +D                 +   G  H+         D H L  + K   G
Sbjct: 141 LPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DIHLLSELAKPKTG 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +G  H+++  ++      KM++ + L  K+   I+ AD     +++     A C++
Sbjct: 180 IVTLVGEAHLEFFGSRTEIAQGKMQIADGL-RKDGLLIVPAD-----KIVNEFLPADCKL 233

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLC 322
           +  G     I L ++     +++ ++S E    +FL      P+ G++   NA++AA   
Sbjct: 234 VRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLPVTGKYNATNAMIAAYTA 285

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           +  G+  A + +   +L +   R E+    + G  I  D Y     ++ +IL+   TI +
Sbjct: 286 LQEGVSEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILETFSTIPA 344

Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              GR + V     +     + + G +   L +  IVTD
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382


>gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
 gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
          Length = 462

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 36/364 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R ++ G +FV +VG + DGH F+PQA+A GA  ++ +              + P 
Sbjct: 28  VSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVANGAAGVLAAQPV-----------DAPA 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++V++T K L         + P     AVTG+ GK+SV   V+   + +G +       +
Sbjct: 76  VMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTSVTRAVEAGLRLAGKAH------A 129

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFT 210
           ++ S+  +N +    P+ LA+ +   + + V  + +   +H  +   L   ++  A + T
Sbjct: 130 SVKSY--NNHIGV--PLTLAR-MPRDTERAVFEIGM---NHADEITPLSSFVQPHAVAIT 181

Query: 211 NLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            +G  HI+ +   +     AK  +F  L+P    A++ AD+ +   +   A   G  V S
Sbjct: 182 TVGPVHIENFPDGEAGVARAKAEIFAGLMPG-GIAVLNADNRWFDYLKGEAEKVGATVWS 240

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  QG    L        +  V++ + G+   F     G     N+L    +  A+ + 
Sbjct: 241 FGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVLLMLEALDVP 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNI--RTITSGR 383
               L  L     + GR         GG    VD ++ +N  S++  LK +  R +   R
Sbjct: 301 RETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTLGARKVAGRR 360

Query: 384 IIVV 387
           I+V+
Sbjct: 361 IVVL 364


>gi|160915597|ref|ZP_02077808.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
 gi|158432717|gb|EDP11006.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
          Length = 440

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 122/280 (43%), Gaps = 57/280 (20%)

Query: 119 AVTGTSGKSSVASFVQQICQRSG--LSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALS 175
           A+TGT+GK+++ + + ++ ++ G  + +  IG P S ++   +D                
Sbjct: 107 AITGTNGKTTITTMLYEMLKKKGQAIVAGNIGYPLSELALRYEDE--------------- 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAKMR 232
                 V  V++E     L   +L GI+  A + +   NL  DH+DY  + ++Y+ +KMR
Sbjct: 152 ------VKDVALE-----LSNFQLLGIEQFAPTVSVVCNLAPDHLDYMPSVESYYASKMR 200

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--- 289
           ++E    KE    +   D     VM+ A N  C+V+       F   +K C +H      
Sbjct: 201 IYENC--KEDAWFLRNLD--DPIVMEYAKNIPCKVID------FSLTRKNCPLHRANGKV 250

Query: 290 --QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  +  E K       L G++ + NA++AA +   +G+    +   + +   V  R E
Sbjct: 251 YFEDVVLFEEKS----LALKGDYNLSNAMIAACMAYRLGVSCEDIQTVIAQFQPVEHRME 306

Query: 348 FVGTNSRGGRIYVDYAHTSN-----SLEMILKNIRTITSG 382
           ++G   RG + Y D   T+      +L    KNI  +  G
Sbjct: 307 YIG-EKRGVKFYNDSKATNTHAVEAALHCFDKNIILLAGG 345


>gi|17986860|ref|NP_539494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. 16M]
 gi|256045063|ref|ZP_05447964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|260565338|ref|ZP_05835822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|265991490|ref|ZP_06104047.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|30316086|sp|Q8YI68|MURD_BRUME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|17982497|gb|AAL51758.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|260151406|gb|EEW86500.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|263002274|gb|EEZ14849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 467

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 114/277 (41%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +      L      Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLELPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|302876612|ref|YP_003845245.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
 gi|307687286|ref|ZP_07629732.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulovorans
           743B]
 gi|302579469|gb|ADL53481.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
          Length = 461

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 129/323 (39%), Gaps = 35/323 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSV 129
           +S   S+  ++A I  + P LV  N R       +   G   K  ++ +AV+GT GK++ 
Sbjct: 68  ISEDVSVIVYTAAIAKDNPELVSANNRNLPMFTRAEFLGEIMKDYKHNIAVSGTHGKTTT 127

Query: 130 ASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            S V  I  +       +  G    I+ + +    T  S  +L +A  Y  S        
Sbjct: 128 TSMVSHILLKGEKDPTILVGGSLDIINGYVR----TGKSDYFLTEACEYKGSF------- 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                 L  +   GI L      N+  DH+DY++       A  + F  L+P++   I+ 
Sbjct: 177 ------LSFYPTIGIIL------NIDADHLDYYKDIDEIEEA-FQKFAYLIPRDGYLIVN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFP 305
            +D  +  V K   N+ C  ++ G     I  K V   ++ +          + F     
Sbjct: 224 NEDERAVNVAK---NSNCNTITFGIDNGDIIAKNVTFNSLGHGSFDMFYKGCEYFHVTLK 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V N+L A    IA GI+   +   +E       RFEF GT      +  DYAH 
Sbjct: 281 VPGRHNVLNSLSAMAAAIASGIEPNHIKAGIESFGGTHRRFEFKGT-VDDITVIDDYAHH 339

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
              ++  L+  + ++  R+I VF
Sbjct: 340 PTEIKATLEACKNVSHNRLICVF 362


>gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
 gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
          Length = 457

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 170/432 (39%), Gaps = 67/432 (15%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           LIY D+ + ++ + I               DSR   A   FVAIVG   DGH F+  A  
Sbjct: 17  LIYGDYNDCVSDIVI---------------DSREANAQNAFVAIVGENLDGHTFMKSAYD 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G +  + + +  ++  S+ I     ++ V +T   L   +     K     + VTG+ G
Sbjct: 62  SGCKTFIKNESNGIKLESSDIN----LIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +                ++ ++    +  L     + L   L  LS +    V
Sbjct: 118 KTTTRDMIYS------------AISAKLNILKNEKNLNNHFGVPLT--LFNLSKEHECAV 163

Query: 186 SVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +E    G ++  + +D +       +N+G  H++   +Q+    AKM +      + + 
Sbjct: 164 -IEMGMSGFNEIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNF-DEANT 221

Query: 244 AIIYADDAYSKEVMKRAH---------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            I+  DD +   + ++ H         N    +    Y  +   L  +C I+ K++    
Sbjct: 222 LIVNGDDKFLSTLKEKEHVYKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKE---- 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 +   P  GE  +YNA+ A   GLC+ I +D   + + L+       R + +  N
Sbjct: 278 ------EIFIPTIGEHNIYNAMSAILVGLCLNISLD--YIKKGLKNFKGTKMRLDII-KN 328

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALD 408
            +   I   Y  + +S++  LK I     GR + + G     G   + G R ++GK +++
Sbjct: 329 EKLTIINDSYNASPDSMDAALK-ILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMN 386

Query: 409 LADIAIVTDDNP 420
             DI I   +N 
Sbjct: 387 NTDIIITIGENS 398


>gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase
           protein [Xanthomonas albilineans]
          Length = 501

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 155/358 (43%), Gaps = 57/358 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +S D+R + AG ++VA+ G + DGH F   A  +GA A++V       +        
Sbjct: 24  IDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGASALLVERRLPQIEL------- 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF----VQQICQRSGLSSF 145
            P +VV +T+  L+  A+ +       + A+TG++GK+SV +     +Q  C+  G S +
Sbjct: 77  -PQIVVADTQLALARIAAGMQRGRATRVAAITGSNGKTSVKALLLAILQYACRLDGGSVY 135

Query: 146 --------QIG-PTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVEASS 191
                   +IG P + I+  A D+       IY   A     ++YL+      VS+    
Sbjct: 136 ANPGNHNNEIGLPLAVIA--APDD---ADYAIYEMGAGKPGDIAYLTDIAPPRVSL---- 186

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +  IA +        +   QT+ A + A        LP +  A+I  DDA
Sbjct: 187 ----------VNNIAPAHLERMGSLLGVAQTKGAIYAA--------LPADGTAVINIDDA 228

Query: 252 YSKEVMKRAHNAG-CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +     ++   A   RVL  G Q G  +   ++    ++    +     + +   PLPG 
Sbjct: 229 FGLWFEQQLSAASRPRVLRFGLQHGAHVTATRIRMAADRTHFVLLTPQGEAETTLPLPGR 288

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             + NAL AA L +A+ +  A +   L ++  VPGR   +     GG + +D ++ +N
Sbjct: 289 HNLLNALAAAALALALDVAPARIAAGLAQVQPVPGR--QISHTLPGGAVLIDDSYNAN 344


>gi|296120948|ref|YP_003628726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296013288|gb|ADG66527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 480

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 151/326 (46%), Gaps = 26/326 (7%)

Query: 27  ERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           E+K +  VS DSR ++ G +F+A+   + DGHLF+  A   GA   ++   +  +   A+
Sbjct: 28  EKKFSGRVSIDSRKLKEGDLFLALSTGQRDGHLFLSDAAKAGAAFAIIERHFEAE--FAS 85

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           ++ + P +VV ++   L L A+    +    ++ +TG+ GK+S  S + ++ Q       
Sbjct: 86  LKLSMPAVVVADSVLALQLLAASHRDEFDGLVVGITGSVGKTSTRSMLYEVLQA------ 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
           +     + ++F  +N L  P  I   +     +      + + A   G D  RL  I + 
Sbjct: 140 RYSGRQSPANF--NNTLGLPLSILELEC----TRDEFAVLEMGAGQRG-DIARLCEIAQP 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  T++G  H+    T  +   +K  LFE  LP+   A     D ++  +  +AH   
Sbjct: 193 EMGVITSIGLAHLATFGTPLSVAESKAELFES-LPENGVAFFPGHDPFALVLKDKAH--- 248

Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           CR ++VG        +++V A+ +  +  +  +G+D+ F+  +   F V NA +A  +  
Sbjct: 249 CRTVTVGEDTVNDWTIQQVRAVRDGYRFVM--DGQDY-FIRTVARHF-VQNAGLAIAVGR 304

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV 349
            +GI +A + + L K   V GR   +
Sbjct: 305 EVGISNAEIADQLAKWQPVSGRCSLI 330


>gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
 gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
          Length = 426

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 157/349 (44%), Gaps = 55/349 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +V  DSR I+   +F AI     +G+ +I + + +GA  +V++  YS  D       
Sbjct: 19  EILKVVMDSRKIEKDSLFFAI----NNGNKYIDEVLERGA-TLVIADDYSGDD------- 66

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            + ++VV++T K +   A          ++A+TG++GK++    +  +  +     ++  
Sbjct: 67  -SRVIVVEDTIKAMQDLAQEYRKALGVKVIAITGSNGKTTTKDMIYSVLSQK----YRCK 121

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T        +N +  P  I     L    +  V+ + +  S  G      +  K     
Sbjct: 122 KTEG----NYNNHIGLPFTI-----LQLDDTDEVSVLEMGMSGFGEIDRLCEIAKPDYAL 172

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H+++ +T++  F AK  + + ++ +    II+ DD Y K +      +G   +
Sbjct: 173 ITNIGDSHLEFLKTRENVFKAKGEIIKYVVSE--NLIIFGDDYYLKNL------SG---I 221

Query: 269 SVGYQGKFIHLKKVCA--IHN----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +VGY+       K C   I N     + +  S+EG ++     L G+    N  +A  + 
Sbjct: 222 TVGYE-------KNCKKRIENFKDTDEGIEFSLEGNNYK--INLNGKHNCINGAMAVVVG 272

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +++ + S  + +  + L++ P RF+ +    +G  +Y++ A+ ++ + M
Sbjct: 273 MSLDLTSEEIQKGFDNLNLTPMRFQKI---VKGETLYINDAYNASPISM 318


>gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
 gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
          Length = 474

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 151/377 (40%), Gaps = 58/377 (15%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V  DSR +  G +FVA  G + DGH +   AI  GA A++ +                
Sbjct: 28  GSVEFDSRKVGPGGLFVAFPGEQVDGHDYAEGAIRAGAVAVLGTRPV----------PAV 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P+++VD+ +  L   A  +  + P   ++ +TG+SGK+S    +  +  R       +GP
Sbjct: 78  PMVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSGKTSTKDLIAALTSR-------LGP 130

Query: 150 T-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDGIK 203
           T +   SF  +N L  P + +       YL     ++GV H+          ++  D + 
Sbjct: 131 TVAPPGSF--NNELGHPYTALQAGPDTRYLVLEKGARGVGHI----------RYLCDVVP 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+G  HI    +++    AK  L    LP +  A++ ADD     +  R    
Sbjct: 179 PQISVVLNVGVAHIGEFGSRETIALAKGELVAA-LPADGLAVLNADDGLVAAMATRTQ-- 235

Query: 264 GCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             RV+  G   +     +  V     +   T+     +      L G  QV N+L AA +
Sbjct: 236 -ARVIRYGEAAEADIRAVDVVLDERGRPSFTLVTPEGEAPVRLGLTGRHQVSNSLAAAAV 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRI----YVDYAHTSN--SLEMIL 373
              +G+        L +L +V G    V T       RI     +D ++ +N  S+E+ L
Sbjct: 295 ARELGM-------PLTELAIVLGEMGLVSTRRMDVFERIDSVTVIDDSYNANPASMEVAL 347

Query: 374 KNIRTITS-GRIIVVFG 389
           + + +I    R + V G
Sbjct: 348 RALASIGQRRRTVAVLG 364


>gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
 gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
          Length = 450

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            N   +DSR +  G IF A+ G K DG+ F+  A+  GA A+V    ++          N
Sbjct: 27  FNAFITDSRKLTKGDIFWALKGEKFDGNTFLQNAVDAGASALVADKFFA----DKIDLKN 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           T ++ V+NT   L   A+    +    ++A+TG++GKS+    +  IC+ SG +   +G
Sbjct: 83  TALVEVENTLTALQTLAAYHRRRSDLKVVAITGSNGKSTTKQMLLSICKTSGPARANMG 141


>gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychromonas ingrahamii 37]
 gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychromonas ingrahamii 37]
          Length = 489

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 11/117 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E   N +S+D+R I++G +F+A+ G + D H F+ +A+ QGA A+++             
Sbjct: 37  EAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEKAVQQGAGALLIDQKK--------- 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQI-CQRSG 141
           RS+ P ++V +TR  L L AS +  +       A+TG++GK++    +  I C  +G
Sbjct: 88  RSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNGKTTTKELLSAILCCHTG 144


>gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
 gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 456

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 153/374 (40%), Gaps = 62/374 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  + +DSR I AG +FVA+ G   DGH F+ QA A GA A++V          A + S+
Sbjct: 32  ITGICTDSRQIAAGNLFVALRGETFDGHQFVDQAAAAGAIALMV---------EAPLSSD 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V NT             + P  ++AVTG+ GK++    +  +    G        
Sbjct: 83  LPQLQVANTLSAYQRLGQWWRQQCPAKVIAVTGSVGKTTTKEMIAAVLSHYG------AV 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSH--GLDQHRLDGIKL 204
             T ++F  +N +  P      K L  L       V  + + A      L Q     + +
Sbjct: 137 LKTEANF--NNEIGVP------KTLLQLEPHHQFAVIEMGMRARGEIALLSQIAQPDVAV 188

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           I    TN+G  HI    +++A   AK  L  E +P    A++ AD       + +  +  
Sbjct: 189 I----TNVGTAHIGRLGSREAIAQAKCELLAE-MPPGGTAVLNADSPLLLPTVAQVWSG- 242

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R ++ G +G  +       I+   Q T+ V G+ +    PL G     N L A G+  A
Sbjct: 243 -RTITYGLEGGTLR-----GIYQPPQ-TLHVGGRTYT--VPLAGAHHALNFLAALGVLQA 293

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-------IYVDYAHTSNSLEMI--LKN 375
           + ++S       ++L   P +      + RGGR       + +D  + +    M+  L  
Sbjct: 294 LDVES-------DRL---PVQLTLELPSGRGGRYRLEPDILLLDETYNAGLESMVAALHL 343

Query: 376 IRTITSGRIIVVFG 389
           +R++   R + V G
Sbjct: 344 LRSLPGQRHLAVLG 357


>gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057]
 gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057]
          Length = 834

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 165/377 (43%), Gaps = 53/377 (14%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA--- 84
           I+ + +DSR +      +F A+   + DG  +IP   A+G    VVS   S +D  +   
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYARGVRNFVVSEE-SYRDIESGKL 82

Query: 85  --TIRSNTPI---LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
             T    +P+   L+V N  K L   A +  GK    ++ +TG++GK+ V  ++ Q+   
Sbjct: 83  KPTANDQSPVVNYLIVPNPLKALQKLAEQHRGKFQIPVIGITGSNGKTIVKEWLHQL--- 139

Query: 140 SGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLD 195
                  I P   I  S  + ++++  P  ++     S L+    G+       S  G  
Sbjct: 140 -------ISPERAIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGI-------SEPGEM 185

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAY- 252
           +   + IK   G  TN+G  H      Q+ +F+ + +  E+L L K    +IY  DD + 
Sbjct: 186 RALQNIIKPTIGILTNIGGAH------QENFFSLQEKCMEKLVLFKNCDVVIYNGDDEFI 239

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP--GE 309
           S  V K   +A     S     + +++ KV     K++ T IS    D D  F LP   +
Sbjct: 240 SNCVAKSMLSAREIAWSRKDMERPLYISKV---EKKEECTVISYRYLDMDNTFTLPFIDD 296

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-- 367
             + N+L     C+ + + +  + E + KL  V  R E      + G + ++ ++ S+  
Sbjct: 297 ASIENSLNCLAACLYLMLPAEKITERMAKLEPVAMRLEV--KEGKNGCLLINDSYNSDLG 354

Query: 368 SLEMILKNI--RTITSG 382
           SL++ L  +  R++ +G
Sbjct: 355 SLDIALNFLYRRSLVNG 371


>gi|288574847|ref|ZP_06393204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570588|gb|EFC92145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 458

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 38/253 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPIL 93
           DSR I+ G +FVA+ G   DGH FI  A ++GA   +VSS++   ++D    IR    I 
Sbjct: 35  DSRKIEEGDLFVALSGKNMDGHDFILDAFSRGAHCALVSSSWGEKIRDLPEGIRV---IE 91

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGL------SSF 145
           V D  +  + +   RL G   +N++AVTG+ GK+S     F+      SG+       + 
Sbjct: 92  VADPEQGLIKIARHRLKGL--KNVIAVTGSVGKTSTREMIFLALGGSSSGVYRARSSHNT 149

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   T++   +D  +              +   G  H      S  +D + +D     
Sbjct: 150 RIGCALTVAEMPEDTSV-------------LILEMGTNHPG--EISEMVDLYPVD----- 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAG 264
               T +   H++   + +   +AK+ + E   P     I   D+   S  V +R+    
Sbjct: 190 TAVITEIAPAHLEGLGSLEGVLDAKLEILES--PNLRKVIFNGDNPMLSSAVKERSFGKN 247

Query: 265 CRVLSVGYQGKFI 277
            + LSVG  G ++
Sbjct: 248 WQALSVGSSGSYV 260


>gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
 gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
          Length = 457

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 8/108 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I  G +FVA+VG   DGH ++ QA ++GA A VVS + S+        S    
Sbjct: 27  VSTDTRSITKGDLFVALVGPNFDGHDYVEQAFSKGAVAAVVSRSDSV--------SRKAA 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            VVD+TR  L+  A     +    + AVTG+SGK++V   +  I  ++
Sbjct: 79  WVVDDTRIALADIAKANRQRFEGPVYAVTGSSGKTTVKEMLHAILSQN 126


>gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
 gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
          Length = 504

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 158/418 (37%), Gaps = 86/418 (20%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV------------------- 73
           V  DSR I  G IF+A+ G + DGH F   A+  GA  ++V                   
Sbjct: 31  VEFDSRKITPGAIFMALPGARADGHDFADAALNSGAALLIVGRPVEQPALLAAPVEINEQ 90

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +S  +  +F A       +  +D   ++ +     L  +    ++ VTG++GK+S    +
Sbjct: 91  TSNATAFEFDAEGHGAAVLAAIDKLARYNT---DVLAAEEGMVVVGVTGSAGKTSTKDLI 147

Query: 134 QQICQRSGLS-----SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
             + + +G +     SF  +IG   T     +D R            +S +S++GV H+ 
Sbjct: 148 GAVLREAGETVAPPGSFNNEIGLPYTALRAGRDTRFL----------VSEMSARGVGHI- 196

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--- 243
                    QH         G   N+G  H+    ++QA   AK  L E L P  +    
Sbjct: 197 ---------QHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL-PAAADGGL 246

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----------IHLKKVC----AIHNKQ 289
           A++ ADD     + KR      R  + G  G            I L  V      +H+  
Sbjct: 247 AVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARASFMLHHPV 306

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFE 347
              + VE   F       G  QV NAL AA + I +GID+A V   L   HV     R +
Sbjct: 307 GEPVRVELSVF-------GAHQVSNALAAAAVGIEMGIDAATVASLLSS-HVAASVNRMD 358

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                S G  I  D  +          N  ++ +G   + +   G RD     ++G++
Sbjct: 359 VRTRESDGVTIINDSYNA---------NPESMRAGIDALAYTAKGRRDAASWAVLGQM 407


>gi|312794215|ref|YP_004027138.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181355|gb|ADQ41525.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 455

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 135/330 (40%), Gaps = 43/330 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G E ++ ++A S +D    I +    L +    +FL L       K+ +N++A++GT G
Sbjct: 59  HGDETVIYTAAIS-KDNPELIAAKRMNLKIYERAEFLGLLM-----KNFKNVIAISGTHG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182
           K++  S +  I +++  +     PT  + +F +    N +       + +A  Y+ S   
Sbjct: 113 KTTTTSMIGYILKKASYN-----PTILVGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLK 167

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + ++                   G   N+  DH+DY +   +  N+  + F + +P   
Sbjct: 168 FNPTI-------------------GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSG 207

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD   K+V+ + H      +S   +         C   N       V+  + + 
Sbjct: 208 FLVANCDDKNVKDVISKLHTQ-VVCISTKEKADIFAGNISC---NDGYYEFDVKNNNDEI 263

Query: 303 L----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           L      +PG   VYN+L A  +   +G++S  + + L +      R E VG    G  +
Sbjct: 264 LAHIKLNIPGFHNVYNSLAAFAVASKLGVESITIEQALSEFCGASRRLEKVG-EFDGIYL 322

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           Y DYAH    ++  L  ++ ++ G++  +F
Sbjct: 323 YDDYAHHPTEIKATLATLKKLSEGKVFAIF 352


>gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 458

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 43/233 (18%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+ DSR    G +FVA+ G   DGH F P A+  GA A++ +    L         
Sbjct: 25  QVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSAVEAGAVAVLAARPLGL--------- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLS 143
             P +VV++    L  +A      H E     +++AVTG+SGK+S    + Q+  R+G +
Sbjct: 76  --PAVVVEDPLAALGAWAR----AHVEALADLDVIAVTGSSGKTSTKDLIAQVLDRAGAT 129

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQ-HRLDG 201
            F      T  SF  +N +  P        L+ L +   T H+ VE  + G      L G
Sbjct: 130 VF------TQGSF--NNEIGLP--------LTALEATADTRHLVVEMGARGQGHIAYLTG 173

Query: 202 IKLIA-GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADD 250
           I     G+  N+G  H            AK  L E  LP  +    A++ ADD
Sbjct: 174 ITPPRIGAVLNVGTAHAGEFGGPDMTARAKGELVEA-LPAAAEGGVAVLNADD 225


>gi|28210045|ref|NP_780989.1| cyanophycin synthetase [Clostridium tetani E88]
 gi|28202480|gb|AAO34926.1| cyanophycin synthetase [Clostridium tetani E88]
          Length = 874

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 151/352 (42%), Gaps = 36/352 (10%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+ ++ G TST   +   N +          AL+ L+++ V  + +E +  G+ +  L  
Sbjct: 499 LAGYKTGFTSTGGIYIDGNIIDEGDTTGYNSALTLLTNKEVEAIVLETARGGIIKKGLAY 558

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQ--AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH+  D   T +  AY  +   L  E +  E   ++ ADD  S +++
Sbjct: 559 DLADVGVITNITTDHLGLDGIDTLEDLAYVKS---LIGEAVKDEGYVVLNADDVMSMKII 615

Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306
            R   +   + S     KFI  +L K C      +  + +E KD   +           L
Sbjct: 616 NRIK-SNVILFSKDKNNKFIREYLNKGCFAIYVHEGYMYIE-KDNKIIPLININNIKIGL 673

Query: 307 PG--EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYV 360
            G  ++ + NA+ A  + I++GI+   + + +E  ++    +PGRF       R   I +
Sbjct: 674 QGKLDYNIENAMAACAVGISMGINPIYIRKAMESFNLDENYIPGRFNIYSFKDR--TIIL 731

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDN 419
           DY H +     ++K  + +   R+I V G  GDR+      +G+I     D I I  D +
Sbjct: 732 DYGHNAEGYNAVIKGAKKLKHNRLIGVIGAPGDRNDEHLIKLGEIGGKNFDYIYIKEDKH 791

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKGNRI-----EAIRTAIEMLNKQDVLVV 464
            R+     +   +  GI   GF +   +I     +A++ AI+   K D++V 
Sbjct: 792 NRTRKKGDVAKLLKTGILNTGFNKDNIKIILKEEDALKEAIKYSKKGDLIVT 843


>gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
          Length = 504

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 158/418 (37%), Gaps = 86/418 (20%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV------------------- 73
           V  DSR I  G IF+A+ G + DGH F   A+  GA  ++V                   
Sbjct: 31  VEFDSRKITPGAIFMALPGARADGHDFADAALNSGAALLIVGRPVEQPALLAAPVEINEQ 90

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +S  +  +F A       +  +D   ++ +     L  +    ++ VTG++GK+S    +
Sbjct: 91  TSNATAFEFDAEGHGAAVLAAIDKLARYNT---DVLAAEEGMVVVGVTGSAGKTSTKDLI 147

Query: 134 QQICQRSGLS-----SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
             + + +G +     SF  +IG   T     +D R            +S +S++GV H+ 
Sbjct: 148 GAVLREAGETVAPPGSFNNEIGLPYTALRAGRDTRFL----------VSEMSARGVGHI- 196

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--- 243
                    QH         G   N+G  H+    ++QA   AK  L E L P  +    
Sbjct: 197 ---------QHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL-PAAADGGL 246

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----------IHLKKVC----AIHNKQ 289
           A++ ADD     + KR      R  + G  G            I L  V      +H+  
Sbjct: 247 AVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARASFMLHHPV 306

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFE 347
              + VE   F       G  QV NAL AA + I +GID+A V   L   HV     R +
Sbjct: 307 GEPVRVELSVF-------GAHQVSNALAAAAVGIEMGIDAATVASLLSS-HVAASVNRMD 358

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                S G  I  D  +          N  ++ +G   + +   G RD     ++G++
Sbjct: 359 VRTRESDGVTIINDSYNA---------NPESMRAGIDALAYTAKGRRDAASWAVLGQM 407


>gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
 gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
          Length = 474

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 141/350 (40%), Gaps = 46/350 (13%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +NQLS+   Q  +  I  VS+D+R +  G +FVA+ G + DGH  +  A   GA A +VS
Sbjct: 13  LNQLSV---QQPDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARLAGAAAAIVS 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                 D         P + V++T   L        G+    ++A+TG++GK++V   + 
Sbjct: 70  HLNPDIDL--------PQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAGKTTVKQLLA 121

Query: 135 QICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASS 191
            IC        Q GPT +T+ +   D          +   L+ LS   +   +V    ++
Sbjct: 122 SICA-------QAGPTLATLGNLNND----------IGVPLTLLSLSDIDQFAVIEMGAN 164

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H  +  RL  + +   G  T  G  H+    +  A    K  LF  L+P E+ A+I   D
Sbjct: 165 HLGEIARLTALARPDVGLITMAGTAHVGEFGSVDAIVQGKGELFVGLVP-EAQAVINL-D 222

Query: 251 AYSKE---VMKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +Y  +    M  A   G  + +     + G++    +   I    Q+ I  +        
Sbjct: 223 SYGADRWWAMGSAQRNGFTLNNDPRARWTGEYNATTERLTIFENGQLLIESQP------L 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           PLPG     N L A  +    G    ++L  L       GR   V  + +
Sbjct: 277 PLPGAHNATNLLAAVAVARTAGFSKEIILAGLNSFTPPAGRMSLVACSEQ 326


>gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mesorhizobium sp. BNC1]
 gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chelativorans sp. BNC1]
          Length = 477

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 158/391 (40%), Gaps = 38/391 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  +   P       +  +S DSR +Q G  F AI G++ DGH F   A+A GA  +V
Sbjct: 9   DLVAAVGGRPFGALPEGVTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLAMAAGAGLLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           +S     +   A  R   P +VV +  K L   A+    +    ++AVTG++GK++    
Sbjct: 69  ISE----EKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVS-V 187
           +     R  LSS       T+ + A+        P+ LA+    A   +   G+ H   +
Sbjct: 125 L-----RHALSS-----VGTVHAAARSFNNHWGVPLSLARLPAGADFAIFEIGMNHAGEI 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E  +  +  H +  + LIA +       H+ + ++      AK  +F  ++P    AII 
Sbjct: 175 EPLTQLVKPH-IAIVTLIAAA-------HLGHFKSLDEIAEAKGEIFAGVVPG-GHAIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCR-VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            DD   K +   A  AG R V   G   +    L +     +   VTI V G++      
Sbjct: 226 RDDQRFKLLADMAAEAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRIG 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYA 363
            PG   V NAL   G     G D + +L  L       GR     +G    G    +D +
Sbjct: 286 APGRHMVQNALSVIGAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIG-EGMFTLIDES 344

Query: 364 HTSNSLEM-----ILKNIRTITSGRIIVVFG 389
           + +N   M     +L +      GR I V G
Sbjct: 345 YNANPASMKAALQVLDSSPVSNGGRRIAVLG 375


>gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase
           [Clostridium sticklandii DSM 519]
 gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Clostridium sticklandii]
          Length = 457

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 151/365 (41%), Gaps = 34/365 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V +DSR IQ    ++AI G   DG+ FI QAI   A ++++S+  S         S
Sbjct: 25  KIANVVTDSRKIQENDCYIAIKGENFDGNDFIEQAINNKA-SVILSNRQS---------S 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           N  ++ V++T   L   A     +     LAVTG+SGK++    +  +        F   
Sbjct: 75  NKEVITVEDTVIALGSIAKNYLMQFDIKKLAVTGSSGKTTTKDMLYYV--------FNEH 126

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            ++  +    +N +  P       AL+           +  S+ G   +    ++     
Sbjct: 127 FSTHRTDGNYNNEIGLP-----LTALNIDKGYEAAIFEMGMSALGEIDYLAQIVRPNIAI 181

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI+  ++Q+  F AKM +    L  +   I+  DD Y   + +  +       
Sbjct: 182 ITNIGSCHIEILKSQENIFKAKMEI-SNYLNNDDYLIVNGDDKYLTSLSENEYKFNLIKY 240

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCIAIG 326
             G + + +      A+  + +  ++  G +  F  P  G   V NAL  +AAGL   I 
Sbjct: 241 GFGEECQ-LRASDYKAVDGQSEFWVTGMGINRRFTLPAIGLHNVSNALSAIAAGLIYKIP 299

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            +   +   L K      R + +  N+     Y++ ++ +N  S+E ++ +  +   GR 
Sbjct: 300 TEK--IQAGLMKFQPSKLRMQILEKNNIK---YINDSYNANPESMEAVITSFESYARGRK 354

Query: 385 IVVFG 389
           I + G
Sbjct: 355 IAILG 359


>gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
          Length = 481

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 151/369 (40%), Gaps = 51/369 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +  E  +DSR   +G +FVAI G + DGH F+ +   QGA A +V    +         +
Sbjct: 26  EATETVTDSRQAGSGAVFVAIKGERVDGHGFVDKVADQGAAAAIVDHEVAC--------T 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLS 143
             P +VV++T   L L A     +  +     +++ +TG+ GK++    +  +       
Sbjct: 78  TMPQIVVEDTVAALGLLAKHNIDRRRQLPGAFDLIGLTGSVGKTTTKDLLSALLS----- 132

Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              +GPT + I SF  +  L   +    A    +++  G  H+             +  +
Sbjct: 133 --TLGPTVAPIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIG-----------EIARL 179

Query: 203 KLIAGSFT----NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             IA   T     +G  H+    +++    AK  + + LLP  + A++ ADD Y   V+ 
Sbjct: 180 TRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDDY---VVP 235

Query: 259 RAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQV 312
            A  A   VL  G QG     +           +  + T++   G+       +PG   V
Sbjct: 236 MAQFASGDVLWFG-QGHTRDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNV 294

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSN--S 368
            NAL AA + +  G+    + + L   H +      + T SR G  +  +D +  +N  S
Sbjct: 295 MNALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALSTVSRQGASFELIDDSFNANPDS 354

Query: 369 LEMILKNIR 377
           ++  L  +R
Sbjct: 355 MKAGLDGLR 363


>gi|239813924|ref|YP_002942834.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
 gi|239800501|gb|ACS17568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
          Length = 707

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 30/184 (16%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHP 114
           G  ++P A  + AE +       + + SAT  ++  +   D  + K + +        + 
Sbjct: 256 GQPYVPTAAREAAEFVA-----KIAELSATNPASAAVEEEDTPQLKLVPIEEPPAPRGYT 310

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
             +LAVTGT+GK++V +   Q+ +R+G S   +  IGPT                   L 
Sbjct: 311 PAVLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPT------------------LLD 352

Query: 172 KALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +++ ++ +  V V E SS  LD   + G +  A +  NL +DH+D+H   QAY +AK
Sbjct: 353 TLAAHIDAETLPDVWVLELSSFQLDG--VQGFEPTAATVLNLTQDHLDWHGDMQAYASAK 410

Query: 231 MRLF 234
            R+F
Sbjct: 411 ARIF 414


>gi|330938043|gb|EGH41811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 106

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------RIEAIRT 451
           KRP+M ++   LAD   VTDDNPRSE P  I  +I    PGF+          R +AI  
Sbjct: 1   KRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI---RPGFVAADKVRFIEGRGQAIAE 57

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            I   N  DV+V+AGKGHE    + NG+++
Sbjct: 58  LIASANADDVVVLAGKGHEDYQEI-NGQRQ 86


>gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
 gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
          Length = 453

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 13/118 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+RHI    +F+A+VG + D H F  QA+  GA A++V  A  L           P+
Sbjct: 27  VSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVERALDL-----------PV 75

Query: 93  --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             +VV +T+  L    + ++ +     +A+TG+ GK++V   V  I Q+ G   F  G
Sbjct: 76  AQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVASILQQKGKVLFTAG 133


>gi|25028608|ref|NP_738662.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259507666|ref|ZP_05750566.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|29336721|sp|Q8FNU1|MURC_COREF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|23493894|dbj|BAC18862.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259164713|gb|EEW49267.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
          Length = 489

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 114/291 (39%), Gaps = 49/291 (16%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           + GT GK+S  S      Q +G+  SF IG         Q N+  T +            
Sbjct: 128 IAGTHGKTSTTSMAVVALQAAGMDPSFAIG--------GQLNKAGTNA------------ 167

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG     V A +   D   L     IA   TN+  DH+D+ +T +AYF    ++FE+  
Sbjct: 168 HQGTGEAFV-AEADESDASLLRYTPEIA-VVTNIEPDHLDFFKTPEAYF----QVFEDFA 221

Query: 239 PKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---------IH 286
            + +P    ++  DD  +  + +RA   G   +  G          V           + 
Sbjct: 222 DRLTPGGTLVVCLDDPGAAALGERAVARGINAVGYGTVDAVAAHPTVPVKATILSSRVVA 281

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 + ++G++ + +  +PG   V N   A      +G D   +   L     V  RF
Sbjct: 282 EGTYAVLDIDGREVEIILQIPGNHMVLNGAAALLSGYLLGADLDKLAAGLSDFSGVRRRF 341

Query: 347 EFVGTNSRGGR-----IYVDYAHTSNSLEMILKNIR----TITSGRIIVVF 388
           E+ GT  RGG+     +Y DYAH    +E +LK  R        GR+IV F
Sbjct: 342 EYHGT-VRGGQFDGASVYDDYAHHPTEVEAVLKAARERVDAAGEGRVIVAF 391


>gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 458

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 43/298 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I E+ +DSR      +FV ++G K DGH +I    A GA A + S        + ++  +
Sbjct: 27  IEEIFTDSRQKVNKGLFVPLIGEKFDGHDYIDDVKAMGALATLTSKK------NDSVHQD 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GL 142
              + V++T+K L   A     K    I+A+TG+ GK++    V  + + +       G 
Sbjct: 81  LITIAVEDTQKALLDVARYYSSKVDRPIIAITGSVGKTTTKEMVAAVLETTLKVHKTVGN 140

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG- 201
            + +IG   T+ + ++D++++             +   G+ H          +  RL   
Sbjct: 141 YNNEIGVPKTMFALSEDDQVS-------------VIEMGMNHFG--------ELSRLTSV 179

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+G  HI++ ++++    AK+ + E L P E   II  D+     +M +  
Sbjct: 180 VKPDFAVITNIGTAHIEHLESREGILKAKLEILEGLKP-EGTVIINGDEPL---LMGKKQ 235

Query: 262 NAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +     ++ G+  +  + +  V       +  +      F    P PG     NAL+A
Sbjct: 236 D---NWITFGFDPRLDYCVSNVVTYGVFTEAVVYTPNSVFKIKIPSPGVHMALNALIA 290


>gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 503

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +S D+R ++AG  F AI G++ DGH F+  A   GA   VVS     Q   A  R  
Sbjct: 27  ISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTAATKAGAALHVVSE----QKLPALGRVQ 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           +P+L+VD+  K +S  A     +    I+AVTG+ GK++ 
Sbjct: 83  SPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGKTTT 122


>gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
 gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
          Length = 453

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I+ V++D+R I  G +FVA+ G K D H F   A+  G+ A++VS    +       
Sbjct: 21  DTQIDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVKAGSGALLVSKRLPV------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             + P LVV +TR  L      +  + P  ++ +TG+SGK+SV      I +  G
Sbjct: 74  --DVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSGKTSVKEMTAAILRECG 126


>gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SS3/4]
          Length = 462

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 130/324 (40%), Gaps = 44/324 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N++  DSR ++ G +FV I+G K D H F+ Q   +GA A++ S      +  A   ++
Sbjct: 26  LNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGAGAVLTSEHKEKTEEMA--ETS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142
              + VD+T+K L      L  +    I+ VTG+ GK++    +         + +  G 
Sbjct: 84  CAWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTREMIAAALSARFHVYKTPGN 143

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S+ Q+G   T+S   +++ +                  GV  + +       +   L  I
Sbjct: 144 SNSQVGVPITVSEITKEDEV------------------GVLELGMS------EPGELTVI 179

Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             IA       TN+G  HI+   +++  +  K+ + ++ L      I+  DD     + +
Sbjct: 180 ARIAKPDVAVITNIGITHIEQLGSRENIYREKLTI-QDGLSDGGILILNGDDDM---LCR 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                G + +  G  G+    + V    +  K + T    GK    L  + G   V NAL
Sbjct: 236 TRGKVGVKTVYYG-TGETCDYRAVDLVLMDGKTEFTAVHAGKTQKVLLNVMGTHNVMNAL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLH 340
            A  +C   G+      E L   H
Sbjct: 295 AAIAVCCERGMTMEEAAEGLLTFH 318


>gi|295094465|emb|CBK83556.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus sp. ART55/1]
          Length = 460

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 126/325 (38%), Gaps = 62/325 (19%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQI 136
           ++F A +  N P+L    TR       ++L G+  EN    +AV+GT GK++  S +  I
Sbjct: 84  EEFKAAVEKNIPML----TR-------AQLLGQIMENYKYSIAVSGTHGKTTTTSMLSYI 132

Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                L      PT ++         N     S  ++ +A  Y +S              
Sbjct: 133 -----LIDADTDPTISVGGILDSIGGNIRVGKSEYFVTEACEYTNS-------------- 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                    K       N+  DH+D+ +           +F    PKE   I+  D  Y 
Sbjct: 174 -----YHAFKPFISIILNVDADHLDFFKDIDE-IAESFHVFATKTPKEGLVIVNGDMKYY 227

Query: 254 KEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQ-------QVTISVEGKDF-DFL 303
             V++   +  CRV++ G   Q K+       + HN +         T+ V+GK+  D  
Sbjct: 228 DTVVR---DLECRVVTFGKGAQNKY-------SAHNIRFDDFGHPTYTLVVDGKEITDIT 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  VYN+L A    + +GI   ++ + L +      RFE+ GT     R+  DYA
Sbjct: 278 LKVFGEHNVYNSLSAIAASLELGISIDVIKQGLSECVGAERRFEYKGTILDNVRVMDDYA 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388
           H    +   LK  +  +   +  VF
Sbjct: 338 HHPTEIAATLKAAKNTSYNELWCVF 362


>gi|108800221|ref|YP_640418.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119869349|ref|YP_939301.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126435844|ref|YP_001071535.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
 gi|122976796|sp|Q1B6X2|MURC_MYCSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224706|sp|A3Q1L7|MURC_MYCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224707|sp|A1UI53|MURC_MYCSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108770640|gb|ABG09362.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119695438|gb|ABL92511.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126235644|gb|ABN99044.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
          Length = 484

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 11/188 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+  + +AY  A    F E L      I   DD  S  + +R    G RVL 
Sbjct: 189 TNIEADHLDFFGSAEAY-TAVFDAFVERLTPGGALIACVDDPGSAALAERTAALGVRVLR 247

Query: 270 VGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G  G       +     +       + ++ E         +PG     NAL A    + 
Sbjct: 248 YGSAGGRDLAGALVGWEQQGTGAVAHIQLAGESAPRAMRLSVPGRHMALNALGALLAALQ 307

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---- 380
           +G D   VL+ L     V  RFE VGT + G R++ DYAH    +   L  +R +T    
Sbjct: 308 VGADPDTVLDGLAGFEGVRRRFELVGTAT-GVRVFDDYAHHPTEVAATLAALRAVTDQAG 366

Query: 381 SGRIIVVF 388
            GR +VVF
Sbjct: 367 DGRAVVVF 374


>gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
 gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
          Length = 453

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 13/118 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+RHI    +F+A+VG + D H F  QA+  GA A++V  A  L           P+
Sbjct: 27  VSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVERALDL-----------PV 75

Query: 93  --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             +VV +T+  L    + ++ +     +A+TG+ GK++V   V  I Q+ G   F  G
Sbjct: 76  AQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVASILQQKGKVLFTAG 133


>gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
 gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
          Length = 453

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 150/337 (44%), Gaps = 38/337 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + KD  +++N   I  ++ +E  I  ++ DSR ++ G +F+  +G   DGH +I  A  +
Sbjct: 4   LVKDLEQILNAKKINIVENKE--ITGIAIDSRKVKEGDLFIPFLGENVDGHNYIESAFEK 61

Query: 67  GAEAIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           GA A     + SL +DF+    S+  I+ V+++   +   A          I+A+TG++G
Sbjct: 62  GAAA-----SLSLKEDFT----SDNNIIYVEDSYVAIQALAKHYLDSLNAKIIAITGSNG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  + +    + F++  T    +F  +N L  P  I  A   S +       +
Sbjct: 113 KTTTKDIITGLLE----TKFKVHKTQ--GNF--NNELGVPITILAAPEDSEI-------L 157

Query: 186 SVEASSHGLDQHRLDGI-KLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            +E  + G  Q  LD + KL+   +   TN+G  HI++  +++    AK  +    + K+
Sbjct: 158 VLEMGADGFGQ--LDFLSKLVEPDYTVITNIGESHIEFFGSREGIAKAKFEITNG-MKKD 214

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +   D+   K+++ +++          Y    +    +   H   ++ +S    D  
Sbjct: 215 GFFVYNGDEVLLKDLVDKSNIGATSCGENDYNNIILENYTITRDHIDFKLNLS----DEK 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           F   L G+  ++N + A  +   +G+    + + +EK
Sbjct: 271 FTTKLKGKHNLFNIMFATAIAEKLGLSIDEIRKAIEK 307


>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella
           patens]
 gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 135/319 (42%), Gaps = 44/319 (13%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D +A I++  P          L   A+ L G     + AVTGT+GKS+V +F  QI + +
Sbjct: 133 DIAAAIQAGVPAF------SELGFAAAALPGN--IKVAAVTGTNGKSTVTTFTSQILRNA 184

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRL 199
           G+ +F  G             L TP    + + L++ +      V+ VE SS+ L+    
Sbjct: 185 GVRTFVGG------------NLGTPLSDGVLQCLAFPAEDPPFSVAVVEVSSYQLE---- 228

Query: 200 DGIKLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                + GSF        NL  DH++ H++ +AY + K R+F  +   +  AII   D  
Sbjct: 229 -----LPGSFHPKAAVILNLTPDHLERHKSMEAYGSIKCRVFSRMEASDV-AIIPQSDVL 282

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + +   + +   R    G  G  + L K          T  VE + +       G    
Sbjct: 283 LRRLAAMSGSQATRAWMGGLPG--VQLDKDARRAIVVVPTTGVEARLYLSSLQAVGTHNA 340

Query: 313 YNALVAA--GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           +NA  AA   L + +G+ S  +   +  L   P R E V  + + G ++V+ +  +N ++
Sbjct: 341 HNAGTAALLALSLDVGLQSEDIQAAIPHLKAPPHRMEIVHQDDQ-GVVWVNDSKATN-VD 398

Query: 371 MILKNIRTITSGRIIVVFG 389
                IR+I   + +V+ G
Sbjct: 399 STSVGIRSIVGKKAVVLLG 417


>gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
          Length = 480

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 13/122 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+DSR +    +F A+ G K D H ++  A+ QG  A+VV  A  +         N
Sbjct: 25  VETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSAVEQGNTAVVVEHACEV---------N 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQICQRSGLSSF 145
            P +VV +TR  L   A  L  +     +A+TG+SGK++V    AS +QQ  ++S + + 
Sbjct: 76  VPQIVVADTRLALGHLAQWLKSELNPLTVAITGSSGKTTVKEMTASILQQTARKSAVKNT 135

Query: 146 QI 147
           ++
Sbjct: 136 EV 137


>gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
 gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
          Length = 454

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 156/382 (40%), Gaps = 38/382 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R +  G +FVA+ G + DGH FI QA  +GA A ++  A         I    P 
Sbjct: 30  VSTDTRSLVPGSLFVALRGERFDGHAFIAQAREKGASAALLEQA---------INDPLPQ 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V + R  L   A+    +    I+AVTG++GK++V   +  +    G     +     
Sbjct: 81  IEVADARIALGQLAACWRQRFVRPIVAVTGSNGKTTVKEMIASVL---GWREPVLATRGN 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +     +N +  P  +     L   +S     + + A+  G  ++     +      TN 
Sbjct: 138 L-----NNDIGVPLTL-----LELDTSHRFAVIEMGANRPGEIEYLSRLTRPQVALITNA 187

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNAGCRVLS 269
           G  H+D     +    AK  +F+  +  E  AI+ ADD   +Y +++          V+ 
Sbjct: 188 GPAHLDGFGDLKGVARAKGEIFQG-MGSEGVAILNADDPCFSYWRDLAGE-----LPVIG 241

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  +   +  + V A       T+           PLPG   V NAL A+   IA+G+D
Sbjct: 242 FGLSKSAEVTARHVVASTGSSCFTLITPAGKAKIQLPLPGRHNVLNALAASAATIALGVD 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIV 386
              +   L  L  VPGR +       GG   +D  + +N  S +  L+ +      R +V
Sbjct: 302 RQHLSASLAALSSVPGRLQI--RRGIGGMRLLDDTYNANPASFQAALELLAKFPGERALV 359

Query: 387 V--FGCGGDRDQGKRPIMGKIA 406
           +  F   G+       IMGK A
Sbjct: 360 LGDFAELGEEAASLHRIMGKQA 381


>gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
 gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
          Length = 458

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 133/332 (40%), Gaps = 37/332 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D       N
Sbjct: 27  IQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVENP-PEN 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V++T   L + A     +    ++ VTG++GK+S    V  I      + F++  
Sbjct: 81  LPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSILA----TKFKVQK 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +  A   
Sbjct: 137 TE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAII 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H+    +++A   AK+ +   L  ++    +Y  D           N     ++
Sbjct: 188 TNIGEAHLMDLGSREAIAEAKLEIVTGL--QKGGVFVYNGDEPLLTNRVPEMNLAAETVT 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVAAGL 321
            G              +    VT+   G  F         F  P+ G+  VYN L +  +
Sbjct: 246 FG--------DARANDYYPTTVTLQATGTHFKMNRDETSSFYLPVLGKHNVYNTLASMAI 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               G+    + + L  L +   R E V T+S
Sbjct: 298 AKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329


>gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
 gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
          Length = 457

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 159/392 (40%), Gaps = 56/392 (14%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           + R+   V  DSR ++  ++FVAI G   + H FIP  I +GA  +V        DF   
Sbjct: 24  KSREAAGVVIDSRKVEKDYLFVAIDGENVNAHKFIPDTIEKGALCVVSHEDLGDTDF--- 80

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P ++V++T + L   A          ++ +TG+ GK+S    +  +  +     +
Sbjct: 81  -----PYILVESTGQALLDIAKLYRDSFDVTVVGITGSVGKTSTKEMIASVVSQK----Y 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           ++    T+ +F  +N    P  I+         +   GV H          +  RL  + 
Sbjct: 132 KV--HKTLGNF--NNEWGLPITIFEMDESHEVVILEMGVNHFG--------EMRRLSSVA 179

Query: 204 LI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260
                  TN+G  H+++ +T++     K ++ +++    S  +   DD  SK    +   
Sbjct: 180 SPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDDLLSKMGPVKGVT 239

Query: 261 -----HNAGCR-----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 N  C+     ++ +G +G        C IH         +G+ FD L P PG  
Sbjct: 240 PVLFGTNEDCQCYASGIVPMGLKGT------ACTIHLP-------DGEAFDCLIPTPGAH 286

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL  A +  A+G+ +  +   +E    +PGR   + T   G  + +D  + +N + 
Sbjct: 287 MVSNALAGAAVGAALGLTADEIKAGIEAHTTLPGRNNIIST---GSLMILDDCYNANPVS 343

Query: 371 MILK-NIRTITSGRIIVVFGCGGDRDQGKRPI 401
                ++  +  GR + V G  G+    ++ +
Sbjct: 344 TKAAIDVLDMAIGRKVAVLGNMGELGNNEKEL 375


>gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
 gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
          Length = 470

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 9/110 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ IN+VS+D+R      +F+A+ G + D H FI QA+AQGA A++       Q      
Sbjct: 24  QQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQALAQGAIAVITQQPLDEQ------ 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
              TP ++V++TR  L L  + +  +     +A+TG++GK++V   +  I
Sbjct: 78  ---TPHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGKTTVKEMLAAI 124


>gi|315931390|gb|EFV10359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Campylobacter jejuni subsp. jejuni 327]
          Length = 98

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 8/97 (8%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456
           MG I    A IAI+T DNPRSE+P+ I  EI+ G         IE  +R EAI+ A+E+ 
Sbjct: 1   MGTIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELK 58

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 59  ENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 94


>gi|330893180|gb|EGH25841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 9/175 (5%)

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +DQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA+ 
Sbjct: 1   MDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAFG 58

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQV 312
           +E+      +     S      +++ +      +  + T ++ +G+ F     L G F +
Sbjct: 59  RELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNL 117

Query: 313 YNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            N L A G    +G+D AL  +L+ L KL    GR + +G   +   + VDYAHT
Sbjct: 118 SNVLSAVGAL--LGLDYALDEILKVLPKLEGPVGRMQRLGGADK-PLVVVDYAHT 169


>gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 450

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 147/375 (39%), Gaps = 30/375 (8%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           ++ P     + I  V++DSR + +G  FVA+ G + +G  F+P AIAQGA  ++V     
Sbjct: 16  ALLPGSDGSQTIQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQGAGGVLVD---- 71

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                  I  + P ++V +T   L    +    +    +LAVTG+ GK++V   +  I  
Sbjct: 72  -------IPVSAPGVLVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKTTVKEVLTAILN 124

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +SG            +   Q+N +  P        L+ L  +    V     +H  +   
Sbjct: 125 QSG--------PVLATRGNQNNHVGVP------LTLARLGPEHRYAVLEMGMNHPGELTL 170

Query: 199 LDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           L G+ +       N    H++   +  A   AK  +    L      I+  DD ++    
Sbjct: 171 LSGLARPTLALINNAAPAHLEGLGSVAAIAAAKGEILSG-LDNRGLTILNGDDPFADFWA 229

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +RA     R  S+ ++   +             + +      F    PLPG+    N L 
Sbjct: 230 ERAPGEVWR-FSLEHRPTRVRGHWRAHEQGGGHLEVRAPQGQFTLEIPLPGQHNGRNVLA 288

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A    +A+ I    +   +  L  +PGR ++  +   G R+  D Y     SLE  L+ +
Sbjct: 289 ATTAALALDIPIPQIQRAVAGLQTIPGRLQWR-SGPHGSRMLDDTYNANPASLEAALRVL 347

Query: 377 RTITSGRIIVVFGCG 391
                 RI+V+   G
Sbjct: 348 AAQPGQRILVLGDMG 362


>gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652]
 gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CIAT 652]
          Length = 470

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 137/334 (41%), Gaps = 20/334 (5%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I  ++  P       I  +S DSR I +G  F AI G++ DGH +   A+A GA  +VV
Sbjct: 1   MIAAMAGRPFGALPEGITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVV 60

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S A       A  R   P++VV++    L         +    I+AVTG+ GK++    +
Sbjct: 61  SEAR----LPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEML 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +   SG         ++++SF  +N    P  + LA+ +   +  GV  V +  +  G
Sbjct: 117 RHVLSPSGKVH------ASVASF--NNHWGVP--LTLAR-MPDDTDYGVFEVGM--NHPG 163

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +  +  I+      T +   H+   ++ +    AK  +FE L       ++  D+   
Sbjct: 164 EIRPLVTMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGL-EAGGHVVLNRDNDQF 222

Query: 254 KEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + + A + G   + S G   K    L +         + +++ G+  +     PG   
Sbjct: 223 NFLDRTAQSLGVEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHI 282

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             NAL A G+   +G D    +  L  L    GR
Sbjct: 283 AENALAALGVVRIVGADLEKAIAALATLKPEKGR 316


>gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 458

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 134/330 (40%), Gaps = 33/330 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D       N
Sbjct: 27  IQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVENP-PEN 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V++T   L + A     +    ++ VTG++GK+S    V  I      + F++  
Sbjct: 81  LPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----TKFKVQK 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    +F  +N +  P  I     L+   +  V  + +  SS G  +      +  A   
Sbjct: 137 TE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAII 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H+    +++A   AK+ +   L  ++    +Y  D           N     ++
Sbjct: 188 TNIGEAHLMDLGSREAIAEAKLEIVTGL--QKGGVFVYNGDEPLLTNRVPEMNLAAETVT 245

Query: 270 VG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            G      Y    + L +    H K         +   F  P+ G+  VYN L +  +  
Sbjct: 246 FGDARANDYYPTTVTL-QATGTHFKMN-----RDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+    + + L  L +   R E V T+S
Sbjct: 300 HFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329


>gi|33593953|ref|NP_881597.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis Tohama
           I]
 gi|44888182|sp|Q7VUQ4|MURC_BORPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33564027|emb|CAE43293.1| UDP-N-acetylmuramate--alanine ligase [Bordetella pertussis Tohama
           I]
 gi|332383371|gb|AEE68218.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis CS]
          Length = 468

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 110/265 (41%), Gaps = 47/265 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S V  +    GL  +F IG    ++S   + RL              
Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARL-------------- 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG  ++ VEA     D   L+ + ++A   TN+  DH+D +    A   +    F +
Sbjct: 152 --GQG-EYIVVEADES--DASFLNLLPVMA-IVTNIDADHMDTYGHDVARLKSAFIEFTQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTI 293
            LP    AI+ ADDA  +E+M         + + G         +VCA     +  ++  
Sbjct: 206 RLPFYGSAILCADDANVREIMPFVSRP---ITTYGLSPD----AQVCAQDVQADGTRMRF 258

Query: 294 SVEGKDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +V+ +D D + P       LPG   V NAL A  +   +G+D A + E L     V  RF
Sbjct: 259 TVQRRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRF 318

Query: 347 EFVG----TNSRGGRIYV---DYAH 364
              G      + GG I+    DY H
Sbjct: 319 TQWGDLPVPAAHGGGIFTLVDDYGH 343


>gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate
           [Corynebacterium glutamicum]
          Length = 293

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 40/250 (16%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI----------VVSSAYSLQ 80
           + V  DSR +  G +F+A+ G + DGH F   AI +GA A+          +V     +Q
Sbjct: 29  SSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREVDVPAIVVPPVKIQ 88

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           + +A I ++ P      VV+   +            H  N++A+TG++GK+S   F+  +
Sbjct: 89  ESNADIYAHEPDGHGAAVVEALSRLARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATV 148

Query: 137 CQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL----SSQGVTHVSVEASS 191
                    Q GPT +   SF  +N L  P  +       YL    S++G+ H+      
Sbjct: 149 LG-------QDGPTVAPPGSF--NNELGLPHTVRCTTDTKYLVAEMSARGIGHI-----K 194

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYAD 249
           H L + R   I  +     N+G  H+    +++    AK  + E L  K++   A++ AD
Sbjct: 195 H-LTEIRPPRIAAV----LNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNAD 249

Query: 250 DAYSKEVMKR 259
           D +   +  R
Sbjct: 250 DPFVARMAPR 259


>gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
 gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
          Length = 467

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 32/344 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  + +DSR  +AG  F+A+ G + D H FI Q  AQG E  +VS           + +
Sbjct: 36  QIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQGCEIAIVSR---------PVDA 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +   LVV++TR  L    +    ++P+  ++A+TG+SGK++    +  I  R       +
Sbjct: 87  DICQLVVEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSR-------L 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            PT  ++    +N L  P  +     L          + + AS  G   +    ++    
Sbjct: 140 APT-LVTRGNLNNDLGVPVML-----LELRPEHQYAVMELGASHQGEIDYTSKMVQPHVA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H+     +     AK  ++  +      +II A D +++ +  RA     + 
Sbjct: 194 GIINIGTAHLGEFGGRDGICRAKSEIYAHI---SETSIIPAADDFAEVI--RAAVRTEKS 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G  G+ ++   V         T++          P  GE  V NA  AA   +AIGI
Sbjct: 249 LSFGAGGE-VYASDVVLEAQSSSFTLNTPQGSKTVQLPFAGEHNVENATAAAAFALAIGI 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
               ++  LE+     GR  F+        +++D  + +N   M
Sbjct: 308 GLDDIVAGLEQAVGAKGRLNFIPHKD---YLFIDDTYNANPGSM 348


>gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
 gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
          Length = 458

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 138/334 (41%), Gaps = 31/334 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +W    ++ VS+D+R IQAG ++V + G   +GH F+ +A  +GA A++ +      +  
Sbjct: 21  EWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKGAVAVLWA------ERE 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            T     P++VVD+T   L   A+R   +    ++ VTG++GK++    +  +      +
Sbjct: 75  GTPPEGVPVVVVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKDMIAALLS----T 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQ-HRLDG 201
            +++  T        +N +  P        L+ LS  +G     VE    G  +  RL  
Sbjct: 131 HYRVQKTEG----NLNNHIGVP--------LTLLSLDEGTEMAVVEMGMSGFGEIERLTM 178

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMK 258
           I +  A   TN+G  H+    +++    AK+ +   L        +Y  D    ++ V K
Sbjct: 179 IARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGL--HHDGLFVYHGDEPLLTERVPK 236

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            +          G Q  +              V  ++ G+      P+ G+  VYNAL A
Sbjct: 237 LSLPRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGR--TLFMPVLGKHHVYNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +    GID   +   L +L V   R E V T 
Sbjct: 295 IAVARFFGIDWEGIDAALSRLQVTRMRTEVVKTK 328


>gi|182420067|ref|ZP_02951301.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237669521|ref|ZP_04529501.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376104|gb|EDT73691.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237654965|gb|EEP52525.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 461

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 125/340 (36%), Gaps = 46/340 (13%)

Query: 65  AQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHP 114
           A+GAE  +      +     L  ++A I S+ P ++    +  L +    F   +   H 
Sbjct: 53  AEGAEIYIGHNKDNIKKDVDLVVYTAAIPSDNPEILAAKDQNILLMDRAEFLGHIMKGHK 112

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLA 171
            N+ AV+GT GK++  S +  +   + L      PT  +         N     S  +L 
Sbjct: 113 YNV-AVSGTHGKTTCTSMLSHVTLAANLD-----PTILVGGELDVIGGNFRIGNSEYFLT 166

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D ++      +  M
Sbjct: 167 EACEYKKS-------------------FLKFPPYVGIILNIDADHLDCYKDINEIADTFM 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +L+PK+   + Y DD   KE++    NA C  +S G+        K    +     
Sbjct: 208 A-FSKLIPKDGYLVGYGDDERVKEILS---NAECNTVSYGFNDDSDVTAKNITFNKMGCA 263

Query: 292 TISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  V   D   F     +PG+  V NAL +  + +   I     +E L K      RFE+
Sbjct: 264 SFDVYKSDKKLFSLTLNVPGKHNVLNALASICVSLIFNIADKDTVEGLSKCKGAHKRFEY 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            G    G  +  DYAH    ++  L   + I   ++  VF
Sbjct: 324 KG-ELNGVTVIDDYAHHPTEIKATLNTAQKIDHNKVYCVF 362


>gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile 630]
 gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Clostridium
           difficile]
          Length = 457

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 172/434 (39%), Gaps = 71/434 (16%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           LIY D+ + ++ + I               DSR   A   FVAIVG   DGH F+  A  
Sbjct: 17  LIYGDYNDCVSDIVI---------------DSREANAQNAFVAIVGENLDGHTFMKSAYD 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
            G +  + + +  ++  S+ I       ++D     L+L     Y K   +I  + VTG+
Sbjct: 62  SGCKTFIKNESNGIKLESSDIN------LIDVKDTSLALGDISKYYKEKFDIPFIGVTGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    +                ++ ++    +  L     + L   L  L+ +   
Sbjct: 116 VGKTTTRDMIYS------------AISAKLNILKNEKNLNNHFGVPLT--LFNLNKEHEC 161

Query: 184 HVSVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            V +E    G ++  + +D +       +N+G  H++   +Q+    AKM +      + 
Sbjct: 162 AV-IEMGMSGFNEIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNF-DET 219

Query: 242 SPAIIYADDAYSKEVMKRAH---------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +  I+  DD +   + ++ H         N    V    Y  +   L  +C I+ K++  
Sbjct: 220 NTLIVNGDDKFLSTLKEKEHVYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKE-- 277

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   +   P  GE  +YNA+ A   GLC+ I +D   + + L+       R + + 
Sbjct: 278 --------EIFIPTIGEHNIYNAMSAILVGLCLNISLD--YIKKGLKNFKGTKMRLDII- 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIA 406
            N +   I   Y  + +S++  LK I     GR + + G     G   + G R ++GK +
Sbjct: 327 KNEKLTIINDSYNASPDSMDAALK-ILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSS 384

Query: 407 LDLADIAIVTDDNP 420
           ++  DI I   +N 
Sbjct: 385 MNNTDIIITIGENS 398


>gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
 gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
          Length = 466

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 143/329 (43%), Gaps = 37/329 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR ++ G +FVA++G + DG  F+  A  +GA A ++          A +  + P+
Sbjct: 25  VSTDSRTLKQGELFVALIGERFDGGKFVSNAKEKGAVAAMLQKDAE----PAGLSGDFPV 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG-PTS 151
           + V ++R  L   A+    +    ++ VTG++GK++    +  I + +   +  I  P  
Sbjct: 81  IRVQDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTKEMIAAILRVAASDNAIINDPAE 140

Query: 152 TISSFAQ--DNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            + + A   +N +  P  +  L +   Y +   G+ H+   A    L +  +  I     
Sbjct: 141 RVLATAGNLNNDIGVPQMLLRLRRQHQYAVIEMGMNHLGEIAYLTRLARPNIAVI----- 195

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVMK 258
             TN G  HI+   + +A   AK  +    L +   AI  ADD Y         ++E++ 
Sbjct: 196 --TNAGAAHIEGLGSVEAVARAKAEILVG-LDQSGTAIFNADDRYASLWRECAGAREIID 252

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                  RV +V   G+ ++  ++         T+ V+          PG   +YNAL A
Sbjct: 253 FGLTEKARVSAVYRLGRLVNTLQL----RLPDATVEVK-------LQAPGVHNIYNALAA 301

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           A +  ++GI    ++  LE+   V GR +
Sbjct: 302 AAVAWSLGIKKEWIVAGLERFQSVHGRLQ 330


>gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
 gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
          Length = 452

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 13/138 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++ ++ K++  L+  + I       +K+  V+ DSR +  G +F A+ GN+  GHLF+
Sbjct: 1   MVMRPILLKEWSSLLLDIDI---PCSGKKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFL 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            QA   GA A VV+S Y   D+         +L V + R+ L   A R  G   H E ++
Sbjct: 58  KQAAQSGAVAAVVASDYRGPDYGLQ------LLHVADPREALRA-AGRTQGALFHGE-VI 109

Query: 119 AVTGTSGKSSVASFVQQI 136
            +TG+ GK++  SF QQ+
Sbjct: 110 GITGSVGKTTTKSFTQQL 127


>gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 454

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 50/376 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  + ++  DSR I+ G +F+ + G + DGH FI  A   GA A           FS
Sbjct: 20  EFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               +  P + VD+  +     AS    K   +++AVTG++GK++    +  +       
Sbjct: 69  EREVAGHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------ 122

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
           S +     T  ++  +N +  P   Y A  +   + + V  +      H  D H L  + 
Sbjct: 123 STEYKTYKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELA 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257
           K   G  T +G  H+++  +++     K+++ + +   +S  I+ A      D Y  E  
Sbjct: 175 KPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGM---DSDGILIAPADTIVDPYLPE-- 229

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                    V+  G  G  I +K +    +K+ +T +    D     P+PG++   NA+V
Sbjct: 230 ------SQMVIRFG-DGAEIFVKDLQ--ESKESLTFTTNVIDRPITLPVPGKYNATNAMV 280

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA +   + I    ++E LE + +   R E+    + G  I  D Y     ++ +IL+  
Sbjct: 281 AAYVGKLLAISDDDIVEALETIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETF 339

Query: 377 RTITS---GRIIVVFG 389
             I +   G+ I V  
Sbjct: 340 SKIPANEGGKKIAVLA 355


>gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 464

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P       I+ VS DSR I    +F+ I GN  DGH F+ +A+ +GA AI+ S     
Sbjct: 17  VAPTTGYNSYIDGVSIDSRAITTNSLFICISGNITDGHNFVLKAVEEGASAILASH---- 72

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
             F   +    P+++V +T   L + A          ++ +TGT+GK++V   V Q+   
Sbjct: 73  NPFEGEVP--VPVILVPDTLNGLKVLAQAARKMTKAKVIGITGTAGKTTVKELVAQLLTS 130

Query: 140 SG 141
            G
Sbjct: 131 KG 132


>gi|221065136|ref|ZP_03541241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
 gi|220710159|gb|EED65527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
          Length = 632

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 141/351 (40%), Gaps = 55/351 (15%)

Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153
           L LFA  L G      +   +L +TGT+GK++V S   Q+ +  GLS   +  IGPT   
Sbjct: 230 LDLFAFALKGLREAHGYAPKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPTLLD 289

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +   + +  T P    L                 E SS  LD  R  G +  A +  N+ 
Sbjct: 290 TLSGRIDAETLPQAWVL-----------------ELSSFQLDDCR--GFEPTAATVLNIT 330

Query: 214 RDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAII------YADDAYSKEVMKRAHN- 262
           +DH+D+H   QAY +AK  +F E    +L +E P ++       A      +  +RAH  
Sbjct: 331 QDHLDWHGGMQAYADAKAHVFGEQALMVLNREDPVVMAMLPAPVAVPGKRGKTFQRAHVT 390

Query: 263 -AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFP-----LPGEFQ 311
             G      G  G  + +  +  +    +   + +GK+ D      L P     + G   
Sbjct: 391 FGGDMPRRPGDFGLEV-VNGMTWLVRAHEADETSKGKNVDDLHIVRLMPADALRIRGRHN 449

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLE 370
             NAL A  L    G   A +L  L +    P R + VG   R G + Y D +  +N   
Sbjct: 450 AINALSALALATGAGCTLAPLLYGLREYRGEPHRVQPVG---RVGDVEYFDDSKGTNVGA 506

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            +   +      RI+V+ G  G + Q   P+   ++  +    ++  D P+
Sbjct: 507 TVAALMGLGPDHRIVVILGGLG-KGQDFTPLAAPVSRYVRAAVLIGQDAPQ 556


>gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
 gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
          Length = 470

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 156/382 (40%), Gaps = 44/382 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S+DSR    G +FVAI G++ D H F+P    +   A++V+   + QD+      N
Sbjct: 26  IERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAVRNVSAVLVT--RTPQDW------N 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +  +  ++  
Sbjct: 78  VPALKVADTRVGLGALARGWRRRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL-- 135

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
            +T  +F  +N +  P  ++   A   L+   V  + +   +H  +   L  I +     
Sbjct: 136 -ATAGNF--NNDIGLPLTLFRLHAAHQLA---VVELGM---NHPGETSELAKIAEPTVAV 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKR 259
             N  R+H ++  T +A       +   L P E  A+  ADDAY+           +M  
Sbjct: 187 VNNAQREHQEFMATVEAVALEHASVIHALSP-EGVAVFPADDAYASIWRVAATGNRIMDF 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A N+  R      +G F              ++I       +    + G+   +NAL A 
Sbjct: 246 ALNSAERTTEAAVKGTFA----------GNVLSIDTPAGRLEVTLQVLGDHNAHNALAAT 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSN--SLEMILKN 375
              +A G+    +   LE    V GR +       S  G   +D  + +N  S+   +  
Sbjct: 296 SAALAAGVSLDAIRRGLESFGAVKGRLQVKQGVLGSLAGATVIDDTYNANPDSMRAAIDV 355

Query: 376 IRTITSGRIIVVFGCGGDRDQG 397
           + +  + R++V+   G   D G
Sbjct: 356 LASRPAPRVLVMGDMGEVGDNG 377


>gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 441

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 165/370 (44%), Gaps = 54/370 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  VS +SR +  G +FVA+V +  DGH +I  A+ +GA A++V   +        I +
Sbjct: 21  QVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRGAAAVLVDDQHD-------IPN 72

Query: 89  NTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           + P ++V +T   L  L A R    +P+ ++A+TG++GK++       +  +    +F+ 
Sbjct: 73  DVPAVIVPDTLVALQQLGAFRRQELNPK-VVAITGSNGKTTTKDMTAAVMAKR-YKTFK- 129

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI-KLI 205
               T  +F  +N +  P        ++ L+    T V V     G+D+  +L  + KL+
Sbjct: 130 ----TPENF--NNEIGVP--------MTLLTMPADTEVLV--VELGMDRPGQLTALSKLV 173

Query: 206 AGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  T +G  HI++ QT+     AK+ +   L P     I      + + ++ +A  
Sbjct: 174 VPDVAIITMIGEAHIEFFQTRAKIAQAKLEIVAGLKPDGVLCI-----PFDEPLLTQADV 228

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAG 320
           A         Q   +    V A+      T     ++  F  PL G + + NAL  V+AG
Sbjct: 229 A---------QQVVVFGDGVSAVQGDATTTTFTY-QETRFAIPLIGGYNIMNALAAVSAG 278

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           + + I +D A  +E L+   +   R E + T +RG  +  D Y     ++  +L  ++ I
Sbjct: 279 ILLHIDLDDA--VEALQTFDLTKNRTERLVT-ARGVNLISDVYNSNPTAVAAVLATLKAI 335

Query: 380 TSGRIIVVFG 389
            +    VV G
Sbjct: 336 PAPHKYVVLG 345


>gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
 gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
          Length = 454

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 50/376 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  + ++  DSR I+ G +F+ + G + DGH FI  A   GA A           FS
Sbjct: 20  EFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               +  P + VD+  +     AS    K   +++AVTG++GK++    +  +       
Sbjct: 69  EREVAGHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------ 122

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
           S +     T  ++  +N +  P   Y A  +   + + V  +      H  D H L  + 
Sbjct: 123 STEYKTYKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELA 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257
           K   G  T +G  H+++  +++     K+++ + +   +S  I+ A      D Y  E  
Sbjct: 175 KPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGM---DSDGILIAPADTIVDPYLPE-- 229

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                    V+  G  G  I +K +    +K+ +T +    D     P+PG++   NA+V
Sbjct: 230 ------SQMVIRFG-DGAEIFVKDLQ--ESKESLTFTTNVIDRPITLPVPGKYNATNAMV 280

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA +   + I    ++E LE + +   R E+    + G  I  D Y     ++ +IL+  
Sbjct: 281 AAYVGKLLAISDDDIVEALETIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETF 339

Query: 377 RTITS---GRIIVVFG 389
             I +   G+ I V  
Sbjct: 340 SKIPANEGGKKIAVLA 355


>gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 450

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 74/357 (20%), Positives = 153/357 (42%), Gaps = 47/357 (13%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + I+A+TG++GK++V S V  +C++ GL +   G   T    A+  R    + +++ 
Sbjct: 112 RRGDKIIAITGSNGKTTVTSLVGHLCEKCGLDTVVAGNIGTPVLEAEMQRGGKKAGVWV- 170

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 171 ---------------LELSSFQLEN--TESLRPSAAAVLNISEDHLDRYDDLLDYAHTKD 213

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNK 288
           ++F  +       ++ ADDA  +  MKRA   G +  S+  Q  +       ++ A+ + 
Sbjct: 214 KIFRGV----GVQVLNADDALCR-AMKRAGR-GVKWFSLEKQADYWLERETGRLKAVSDD 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T  +         PL G     N + A  LC A+G+    +++H++    +P R E 
Sbjct: 268 LMNTTDI---------PLQGLHNAANVMAAVALCEAVGLPREELVKHIQTFKGLPHRVEK 318

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +G   + G +++D +  +N +      I  + S    ++ G G  + Q   P+   +   
Sbjct: 319 IG--EKNGVVFIDDSKGTN-VGATAAAISGLQSPLFAILGGLG--KGQDFTPLAQVLRGK 373

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  + ++  D P      +IR ++       I+     EA++TA       D+++++
Sbjct: 374 VKAVLLIGRDAP------QIRRDLAGAGLNLIDCATLQEAVQTAYAQAQSGDIVLLS 424


>gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis Bt4]
          Length = 468

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 152/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS +        T   N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRS--------TGEWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGVRAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETDALAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G        V  + +  ++ I       D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A V   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|146295400|ref|YP_001179171.1| UDP-N-acetylmuramate--alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166222969|sp|A4XGE5|MURC_CALS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145408976|gb|ABP65980.1| UDP-N-acetylmuramate--L-alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 455

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 143/360 (39%), Gaps = 68/360 (18%)

Query: 82  FSATIRSNTPILV--------VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           F+A I  + P LV        V    +FL +       K  +N++AV+GT GK++  S +
Sbjct: 66  FTAAIPKDNPELVKAKRLGLKVYERAEFLGMLM-----KDYKNVIAVSGTHGKTTTTSMI 120

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             I +++ L+     PT  + +F +    N     S   + +A  Y+ S    + S+   
Sbjct: 121 GYILKKALLN-----PTVLVGAFVKQLGGNFCIGSSEYLVVEACEYVDSFLNFNPSI--- 172

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G   N+  DH+DY +  ++  ++  R F   +P+    +   DD
Sbjct: 173 ----------------GVILNIDNDHLDYFKDIESIKDS-FRKFALKIPQNGFIVANLDD 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
              + V   A      V+    + K           N       V  KDF  L      +
Sbjct: 216 ---ENVYSVASYLKQNVIYFSTKTKADFWADNITSCN-GYYEFDVVNKDFKHLCHIKLNI 271

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--------GGRI 358
           PG   VYN+L A  +   +GID   + E +         FEF G + R        G  +
Sbjct: 272 PGFHNVYNSLAAFSVAYTLGIDKNTIKEAI---------FEFCGASRRLEKLGKIDGIVL 322

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTD 417
           Y DYAH    +E  L+ ++ +   ++IV+F       + K  + G + +L LAD  IVTD
Sbjct: 323 YDDYAHHPTEIEATLRTLKKLAKEKVIVIFQ-PHTFSRLKSLMEGFVKSLSLADKVIVTD 381


>gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arsenophonus nasoniae]
          Length = 452

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N V+++SR      +F+A+ G   DGH F  QA   GA A++V    ++         +
Sbjct: 22  LNAVTTNSRQRPIKGLFIALKGKHFDGHHFAEQATIAGASALLVERPLTI---------H 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P ++V++TR  +   A+ +  +    ++ +TG+SGK+SV   V  I  +SG++ F  G
Sbjct: 73  CPQVIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVKEMVAAILTQSGMTLFTEG 131


>gi|113971897|ref|YP_735690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
 gi|122943467|sp|Q0HE84|MURC_SHESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113886581|gb|ABI40633.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
          Length = 488

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 136/326 (41%), Gaps = 54/326 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ +VVS+A + ++          I +V        L   R +G      +A+ GT G
Sbjct: 78  QQADVVVVSTAINPENPEIIAAKELRIPIVRRAEMLAELMRYR-HG------VAIAGTHG 130

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S +  +  ++G   +F IG    ++S   + RL T S   +A+A     S+L  Q
Sbjct: 131 KTTTTSLIASLYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADESDASFLHLQ 187

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D +        +    F   LP 
Sbjct: 188 PMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295
              A++  DDA  +E+M R    G  +++ G+         V A++ +QQ      T+  
Sbjct: 225 YGVAVVCIDDAVVREIMPRI---GRHMITYGFSDD----ADVQALNFQQQGHQCRFTVRR 277

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
           +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF+ +G    
Sbjct: 278 KGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFAT 337

Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377
            +G  + V DY H  + +   +K  R
Sbjct: 338 PKGEVMLVDDYGHHPSEVAATIKAAR 363


>gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108]
 gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108]
          Length = 831

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 161/369 (43%), Gaps = 40/369 (10%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----YSLQDFS 83
           I+ + +DSR +      +F A+   + DG  +IP   A+G    VVS      + +Q FS
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYARGVRNFVVSKESMKRFDVQPFS 83

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +  S    LVV N  K L   A +   +    ++ +TG++GK+ V  ++ Q+     LS
Sbjct: 84  GSQFSTANFLVVSNPLKALQKLAEQHREQFQVPVIGITGSNGKTIVKEWLHQL-----LS 138

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + ++   S  S  +Q   +  P  ++     S     G+       S  G  +   + IK
Sbjct: 139 AERVIVRSPRSYNSQ---IGVPLSVWQMNEQS-----GLAIFEAGISEPGEMRALQNIIK 190

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAY-SKEVMKRA 260
              G  TN+G  H      Q+ +F+ + +  E+L L K    +IY  DD + S  V K  
Sbjct: 191 PTIGILTNIGGAH------QENFFSLQEKCMEKLALFKNCDVVIYNGDDEFISNCVAKSM 244

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP--GEFQVYNALV 317
            +A     S     + +++ KV     K   T IS    D D  F LP   +  V N+L 
Sbjct: 245 LSAREIAWSRKDMERPLYIGKV---EKKDDCTVISYRYLDMDNTFTLPFIDDASVENSLN 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKN 375
               C+ + + +  + E + +L  V  R E      + G + ++ ++ S+  SL++ L  
Sbjct: 302 CLAACLYLMLPAEKITERMGRLEPVAMRLEV--KEGKNGCVLINDSYNSDLGSLDIALNF 359

Query: 376 I--RTITSG 382
           +  R++++G
Sbjct: 360 LYRRSLSNG 368


>gi|302528468|ref|ZP_07280810.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302437363|gb|EFL09179.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 472

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 16/188 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D+H T +AY    +++F + + +  P    I+ ADD  +  + + A  AG R
Sbjct: 189 TNVEPDHLDHHGTAEAY----VKVFSDFVGQIEPGGLLIVCADDEGAARLGEEAAAAGVR 244

Query: 267 VLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           V   G        + +       +   V I+++G++ D    +PGE    NA+ A    +
Sbjct: 245 VRRYGRAASGEGDVRVLDYTPAPDGGVVRIALDGEEHDLRVAVPGEHMALNAVAALLAGL 304

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTIT- 380
            +G     +   L     V  RFEF G   R G  R+Y DYAH    +   L+ +RT   
Sbjct: 305 ELGAPLDGMAAGLAAFGGVRRRFEFKG---RAGDVRVYDDYAHHPTEVAAQLRAVRTAAG 361

Query: 381 SGRIIVVF 388
           +GR++VVF
Sbjct: 362 NGRVVVVF 369


>gi|332187087|ref|ZP_08388827.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
 gi|332012787|gb|EGI54852.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
          Length = 471

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 42/287 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AV GT GK++  S V  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVIN-GGIINSYGSNARLGASDWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   +    TN+  +H+D++ +     +A +  F
Sbjct: 162 ------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHYGSFDRVKDAFVE-F 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKV-------C 283
            E +P    A++  D    + ++ R  +   RV++ G+      + +++  +        
Sbjct: 206 VENVPFYGAALLCLDHPEVQNILPRVRDR--RVVTYGFSAQADVRGVNVTPIPGGNRFEA 263

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            I ++   + S+EG +     P+PG   V NAL A G+ + +GID A + +   +   V 
Sbjct: 264 IIRHRDGSSRSIEGIEL----PMPGRHNVQNALAAIGVALELGIDDATIQQGFGQFGGVK 319

Query: 344 GRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
            RF  VG  +  G +     DY H    +  +L   R    GR+I V
Sbjct: 320 RRFTKVGEIAVDGGVATVIDDYGHHPVEIRAVLAAAREGARGRVIAV 366


>gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
 gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
          Length = 476

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 146/363 (40%), Gaps = 47/363 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR  + G ++VA +G   DGH F+  A  +GA A + S                P 
Sbjct: 33  VVTDSREAEPGSLYVARIGESMDGHQFVGAARDKGAVAALTSRPV----------DELPC 82

Query: 93  LVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSS 144
           +VVD+ +  F+++  + L       ++ +TG+SGK+S    +  +   +       G  +
Sbjct: 83  VVVDDVQAAFVAISRAVLERATDLTVIGITGSSGKTSTKDLLGGVLGAAAPTIAPVGSYN 142

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            ++G   T++    D R            +  + ++G+ H++           R+   ++
Sbjct: 143 SEVGVPLTVTRVTADTRFL----------VVEMGARGIGHINY--------LTRIAPPQI 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G   N+G  H+    +++A   AK  L E  LP +  A++ ADD   + +  R     
Sbjct: 185 --GVVLNVGTAHVGEFGSREAIARAKAELVEA-LPSDGVAVLNADDPVVRAMADRTS--- 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            RV+ VG   +     +   + +  + T  ++           L G   V NAL    + 
Sbjct: 239 ARVVLVGEAAEAAVRAEDVTVGSDGRATFRVTTPAGGATIALRLVGRHHVGNALAVLAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT 380
           +  GI        + +  +V  R+    T    G   V+ A+ +N  S+   L  + ++ 
Sbjct: 299 LECGIPLDTATTSIAEAGIV-SRWRMEVTERPDGVTVVNDAYNANPDSMRAALSALESMG 357

Query: 381 SGR 383
            GR
Sbjct: 358 EGR 360


>gi|323464730|gb|ADX76883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 449

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 43/285 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRS---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           I+ +TGT+GK++V S +  +  +S   G  S  IG  +  S  AQ+      +  YL   
Sbjct: 113 IIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGFVA--SKVAQE----VKTDEYLVTE 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS     G+             +H    I +I    TNL   H+DYH+  + Y NAK R+
Sbjct: 167 LSSFQLLGI-------------EHYRPHIAII----TNLYSAHLDYHENLENYQNAKKRI 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           FE     ES  +I+ +D     +      A     S  ++   I+++K   ++N  ++ I
Sbjct: 210 FEN--QTESDYLIF-NDKQRHLIDTSKIRAKILYFSTQHRVDGIYVEKEYIVYNGVRL-I 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++         LPGE  + N L A    I  G+  + +++ L     +  R +++G N+
Sbjct: 266 HLDD------IVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFSGIAHRLQYIG-NN 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQG 397
           +  + Y D +  +N+L         ++S +  V++ CGG DR  G
Sbjct: 319 KTNKYYND-SKATNTLATQF----ALSSFKQPVIWLCGGLDRGNG 358


>gi|315453896|ref|YP_004074166.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
 gi|315132948|emb|CBY83576.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
          Length = 486

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 50/332 (15%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R ++ L  +++ G     ILA+TG+ GK+SV +++ QI Q   +    +G T+T+   +Q
Sbjct: 145 RGYVQLAKNKILGMKNLKILAITGSFGKTSVKNYLYQILQSKHIIYSSLGSTNTLLGLSQ 204

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           D     P    L     Y++  G      + A S  L+ H            T +G  HI
Sbjct: 205 DINQNLPENTTL-----YIAEAGARQPGDIAAISQLLNHHY--------AVITEVGAQHI 251

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           +Y +T       K  L E    +   A  + ++A  + + ++            Y G+  
Sbjct: 252 EYFKTLDNVIKTKAELLES--SRLEHAFCHHNEALEELISQKDK-------ITFYPGQV- 301

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGID 328
                      ++V  ++EG  F+ L           + G F V N  +A  +    GI 
Sbjct: 302 -----------RRVQATLEGTSFELLLGEQWARFESKILGAFNVENITLAVMVGFYFGIP 350

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIV 386
              +   + KL+ VP R + +  N    ++ +D     N L+ +L+ +R  ++  GR I+
Sbjct: 351 IDQLQRSVAKLNPVPHRLQVLHLND---KVIIDDGFNGN-LKGMLEAVRLSSLYVGRKII 406

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           V     + D+     +GK    + DIAI+T +
Sbjct: 407 VTPGLVESDEESNTTLGKAIDQVFDIAILTGE 438


>gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
 gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
          Length = 464

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 155/374 (41%), Gaps = 80/374 (21%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KIN VS +S+ +    IFVAI G    G+ F+ +A+ +GA A+  S A  + +  A    
Sbjct: 20  KINNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGAFAVYDSEAVKIDEKYA---- 71

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-------SG 141
                 V ++ +FL  FA          ++ +TG++GK++V   +  +  +        G
Sbjct: 72  -ERAFFVKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTEG 130

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   T+    +D+       I L   +S      +           L Q  L  
Sbjct: 131 NYNNHIGLPFTLLRAEKDDDF-----IILEMGMSDFGEIDL-----------LGQIALPD 174

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRA 260
           I +I    TN+G  H+++ +T++  F AK     E++P  +S  +I  DD Y K V  +A
Sbjct: 175 INVI----TNIGESHLEFLKTKENVFLAKT----EIIPHIKSTLVINGDDKYLKNV--KA 224

Query: 261 HNAG-CRVLSV---GYQGKF-------IHLK------------KVCAIHNKQQVTISVEG 297
            N    R L++    Y+ K        IH              K+C      Q T+    
Sbjct: 225 ENIEIVRALNLRNNEYEDKTSDFYYGDIHFDESGTNFFLKYFGKMC------QSTVERNY 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K       + GE  V N ++A  +    G++  ++ E ++ + +   RF+ +     G  
Sbjct: 279 KT-----NVLGEHNVLNLVMAIAVAKQFGMEDKIISEAVKNIELTGMRFQII---ENGNT 330

Query: 358 IYVDYAHTSNSLEM 371
            Y++ A+ ++ + M
Sbjct: 331 TYINDAYNASPMSM 344


>gi|319892171|ref|YP_004149046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161867|gb|ADV05410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 449

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 43/285 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRS---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           I+ +TGT+GK++V S +  +  +S   G  S  IG  +  S  AQ+      +  YL   
Sbjct: 113 IIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGFVA--SKVAQE----VKTDEYLVTE 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS     G+             +H    I +I    TNL   H+DYH+  + Y NAK R+
Sbjct: 167 LSSFQLLGI-------------EHYRPHIAII----TNLYSAHLDYHENLENYQNAKKRI 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           FE     ES  +I+ +D     +      A     S  ++   I+++K   ++N  ++ I
Sbjct: 210 FEN--QTESDYLIF-NDKQRHLIDTSKIRAKILYFSTQHRVDGIYVEKEYIVYNGVRL-I 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++         LPGE  + N L A    I  G+  + +++ L     +  R +++G N+
Sbjct: 266 HLDD------IVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFSGIAHRLQYIG-NN 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQG 397
           +  + Y D +  +N+L         ++S +  V++ CGG DR  G
Sbjct: 319 KTNKYYND-SKATNTLATQF----ALSSFKQPVIWLCGGLDRGNG 358


>gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
 gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
          Length = 463

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 167/396 (42%), Gaps = 40/396 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA+ G   DGH F+ QA AQGA   +VS A            +
Sbjct: 24  VSGVAFDSREVTQGDLFVAMKGEATDGHRFVDQAFAQGAAGAIVSDAV----------DH 73

Query: 90  TPILVVDNTRKFLSL-FAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             I V D+     +L  AS  R+ GK    ++ VTG+ GK+     +     R+      
Sbjct: 74  PHIRVADSAAALQALGIASRRRMGGK----VIGVTGSVGKTGTKEALYLALDRAAPGQAH 129

Query: 147 IGPTSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVS-VEASSHGLDQHRLDGIK 203
                ++ S+  +N +  P S   + +  +Y +   G+ H   + A +H +  H      
Sbjct: 130 ----RSVKSY--NNHVGVPLSLARMPRDSAYGIFEMGMNHAGELSALTHQVRPH------ 177

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   T +   HI++  T+     AK  +FE L P  + AII  D  +   +  +A   
Sbjct: 178 --AAIVTAIAPAHIEFFGTEAKIAEAKAEIFEGLEPGAA-AIIPYDSPHVATLYNKAERH 234

Query: 264 GCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             R+L+ G   Q     L+ V A +    VT  +   +  F    PG+  V NAL     
Sbjct: 235 AARILTFGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSNALAVLAA 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM--ILKNIRT 378
             A+G D A     L ++  +PGR E       GG  + +D ++ +N L M   LK +  
Sbjct: 295 VEAVGGDLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSMAATLKQLGR 354

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + R I V G   +       +   +A  LAD AI
Sbjct: 355 EHADRRIAVLGGMRELGSASADLHAGLAKPLADGAI 390


>gi|312878093|ref|ZP_07738028.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795135|gb|EFR11529.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 455

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 150/362 (41%), Gaps = 49/362 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G E ++ ++A S +D    I +    L +    +FL L       K+ +N++A++GT G
Sbjct: 59  HGDETVIYTAAIS-KDNPELIAAKRMNLKIYERAEFLGLLM-----KNFKNVIAISGTHG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182
           K++  S +  I +++  +     PT  + +F +    N +       + +A  Y+ S   
Sbjct: 113 KTTTTSMIGYILKKACYN-----PTILVGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLK 167

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + ++                   G   N+  DH+DY +   +  N+  + F + +P   
Sbjct: 168 FNPTI-------------------GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSG 207

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD   K+V+ + H      +S   +         C   N       V+  + + 
Sbjct: 208 FLVANCDDKNVKDVISKLHTQ-VVCISTKEKADIFAGNISC---NDGYYEFDVKNNNDEI 263

Query: 303 L----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTNSRGGR 357
           L      +PG   VYNAL A  +   +G++S L +EH L +      R E VG    G  
Sbjct: 264 LAHIKLNIPGFHNVYNALAAFAVTSKLGVES-LTIEHALSEFCGASRRLEKVG-EFDGIY 321

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV 415
           ++ DYAH    ++  L  ++ ++ G++  +F          + ++ + A  L LAD  IV
Sbjct: 322 LFDDYAHHPTEIKATLATLKKLSEGKVFAIF--QPHTFSRLKSLLNEFAESLKLADKVIV 379

Query: 416 TD 417
           TD
Sbjct: 380 TD 381


>gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis TXDOH]
          Length = 468

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 152/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS +        T   N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRS--------TGEWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGERAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETDALAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRLVD 244

Query: 270 VGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G        V  + +  ++ I       D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A V   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|89890158|ref|ZP_01201669.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
 gi|89518431|gb|EAS21087.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
          Length = 417

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 157/361 (43%), Gaps = 45/361 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I+ G +F A+ G   DG+ ++ QA+ +GA    VSS +         ++N  +
Sbjct: 14  VQTDTRKIENGQLFYALSGENFDGNEYVEQALTKGA-IHAVSSDHKW-------KNNPSV 65

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            VV++  K L   A+         I+++TG++GK++    +  +  +      Q     T
Sbjct: 66  TVVEDPLKNLQALATYHRKALDIPIISLTGSNGKTTTKELILSVLGQ------QFNVKGT 119

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-AGSFTN 211
           + +   +N +  P  I     LS+  S  +  V + A +H  +  +L  I L   G  TN
Sbjct: 120 LGNL--NNHIGVPLTI-----LSFDKSTEIGVVEMGA-NHLKEIEKLSTIALPDYGLITN 171

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            G+ H++   +++     K  LFE L      AI+     + +E +KR+           
Sbjct: 172 YGKAHLEGFGSEKNIIIGKSELFEHLKAHGKTAIV---GHWDQEQLKRS----------- 217

Query: 272 YQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            QG  +FI       I  +  +++  EG+  D    L GE+  +N L+AA +     + +
Sbjct: 218 -QGIERFITSTDSKLIKAEPYISLEFEGQKSD--TQLIGEYNYHNMLLAAAVGQIFNMST 274

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVF 388
             +L  L +      R + + +++   +I +D Y    +S+ + L N+        I V 
Sbjct: 275 TSILNGLSQYTPNNNRSQIIQSDNV--KIILDAYNANPSSMSVALSNLSKQKESHKIAVL 332

Query: 389 G 389
           G
Sbjct: 333 G 333


>gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 445

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ +DD + +  MKRA     +  S+  +  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEQEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    ++EH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALIEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|251810613|ref|ZP_04825086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805773|gb|EES58430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 454

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 146/343 (42%), Gaps = 54/343 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115
           + G E I  S  +SL D    I  N  I     ++ + T + L +      S L  + P 
Sbjct: 59  SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEATNRGLKILTEVELSYLISEAP- 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174
            I+AVTGT+GK++V S +  + Q+S L+    G    ++S  AQ+ +    S  YL   L
Sbjct: 118 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+     E   H         I +I    TN+   H+DYH+T + Y NAK +++
Sbjct: 173 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292
           +     +     Y    Y +  +  + N   +      Q +   I++K    + N  ++ 
Sbjct: 216 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 269

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  KD      LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 270 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
            R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 324 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 360


>gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis C6786]
          Length = 468

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 150/372 (40%), Gaps = 30/372 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G   D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +  +  +    +T
Sbjct: 81  LKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFAAAAGADAR---LAT 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +F  +N +  P  +    A   L+    G+ H      +  L +     + L+     
Sbjct: 138 AGNF--NNDIGLPLTLLRLTAAHRLAVVELGMNH---PGETETLARIAAPTVALV----N 188

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++  
Sbjct: 189 NAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAS--IWRVAATGNRIVDF 245

Query: 271 GYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              G        V    +  ++ I       D      GE    NAL +     A G+  
Sbjct: 246 ALHGAGHDTPAAVTGALDGSRLAIDTPDGRIDVQLNALGEHNARNALASTAAAFAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385
           A + + LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R++
Sbjct: 306 AAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365

Query: 386 VVFGCGGDRDQG 397
           V+   G   D+G
Sbjct: 366 VIGEMGEVGDEG 377


>gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
 gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
          Length = 477

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 104/479 (21%), Positives = 183/479 (38%), Gaps = 86/479 (17%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA----TI 86
           +E + DSR +  G +FVA+ G + DGH F+  A   GA   +V      QDF       +
Sbjct: 25  SEAAIDSRQVIPGSLFVALPGVRTDGHQFVGAAFQNGAILALVEKDLP-QDFPTLDLRAV 83

Query: 87  RSNTPI-------------LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
              TP+             L V+NT + L   A     +    ++ +TG+ GKS+    +
Sbjct: 84  SPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWRRRLNIRVIGITGSVGKSTTKELI 143

Query: 134 QQI-------CQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHV 185
            ++        +  G  + +IG   T+    + + R       Y+   ++ L       V
Sbjct: 144 AEVLSQRYRTLKNPGNLNNEIGLPLTLLRLGKGHERAVLEMGFYVPGEIALLCDIAQPQV 203

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                G  TN+G  H +   +Q+A    K  L +  LP    AI
Sbjct: 204 ---------------------GVITNIGTVHAERAGSQEAIARGKSELVQA-LPVGGYAI 241

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------- 297
           +  DD + + +   A     ++L  G       L     +   +  T+ +EG        
Sbjct: 242 LNHDDPWVRWM---ADKTQAQILYYG-------LTPEAHLWADEIETMGLEGIRFRLHYR 291

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            + F    PL G   V  AL A  + I  G+    ++  L++    P +   V   S  G
Sbjct: 292 RESFSVRVPLIGHHSVQTALRATAVGIVEGLTWGEIIHGLQR---SPTQLRLVAVRSSSG 348

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLAD 411
            + +D  + + S E  L +++ +    GR I V G     G  +Q     +G  A ++AD
Sbjct: 349 ALILDDTYNA-SPESTLASLQILHEMKGRRIAVLGDMLELGPYEQSGHEKVGVRAAEVAD 407

Query: 412 IAIVTDDN----PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + +   +      R+     ++ E I  +P   +    IE +R    +L + DV+++ G
Sbjct: 408 VLVAVGELSKIIARAAREAGMKPEKIFWVP---DTSQAIEVLRP---LLKEGDVVLIKG 460


>gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-63q42]
 gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile ATCC 43255]
          Length = 457

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 170/432 (39%), Gaps = 67/432 (15%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           LIY D+ + ++ + I               DSR   A   FVAIVG   DGH F+  A  
Sbjct: 17  LIYGDYNDCVSDIVI---------------DSREANAQNAFVAIVGENLDGHTFMKSAYD 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G +  + + +  ++  S+ I     ++ V +T   L   +     K     + VTG+ G
Sbjct: 62  SGCKTFIKNESNGIKLESSDIN----LIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +                ++ ++    +  L     + L   L  L+ +    V
Sbjct: 118 KTTTRDMIYS------------AISAKLNILKNEKNLNNHFGVPLT--LFNLNKEHECAV 163

Query: 186 SVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +E    G ++  + +D +       +N+G  H++   +Q+    AKM +      + + 
Sbjct: 164 -IEMGMSGFNEIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNF-DETNT 221

Query: 244 AIIYADDAYSKEVMKRAH---------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            I+  DD +   + ++ H         N    V    Y  +   L  +C I+ K++    
Sbjct: 222 LIVNGDDKFLSTLKEKEHAYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKE---- 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 +   P  GE  +YNA+ A   GLC+ I +D   + + L+       R + +  N
Sbjct: 278 ------EIFIPTIGEHNIYNAMSAILVGLCLNISLD--YIKKGLKNFKGTKMRLDII-KN 328

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALD 408
            +   I   Y  + +S++  LK I     GR + + G     G   + G R ++GK +++
Sbjct: 329 EKLTIINDSYNASPDSMDAALK-ILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMN 386

Query: 409 LADIAIVTDDNP 420
             DI I   +N 
Sbjct: 387 NTDIIITIGENS 398


>gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 454

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 154/370 (41%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++  DSR I+ G +F+ + G + DGH FI  A   GA A           FS      
Sbjct: 26  LRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FSEREVEG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++VD+  +     AS    K   +++AVTG++GK++    +  +       S +   
Sbjct: 75  HPYILVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------STEYKT 128

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
             T  ++  +N +  P   Y A  +   + + V  +      H  D H L  + K   G 
Sbjct: 129 YKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELAKPHIGV 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVMKRAHNA 263
            T +G  H+++  +++     K+++ + +   +S  I+ A      D Y  E        
Sbjct: 181 VTLIGEAHLEFFGSREKIAKGKLQIVDGM---DSDGILIAPVDSIVDPYLPE-------- 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+  G  G  I +K +    +K  +T +    D     P+PG++   NA+VAA +  
Sbjct: 230 SQMVIRFG-DGAEIFVKDLQ--ESKDSLTFTTNVIDRPITLPVPGKYNATNAMVAAYVGK 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS- 381
            + I    ++E LE + +   R E+    + G  I  D Y     ++ +IL+    I + 
Sbjct: 287 LLAISDDDIVEALENIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETFSKIPAN 345

Query: 382 --GRIIVVFG 389
             G+ I V  
Sbjct: 346 EGGKKIAVLA 355


>gi|27467776|ref|NP_764413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis ATCC 12228]
 gi|282876386|ref|ZP_06285253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|30316001|sp|Q8CSX6|MURD_STAES RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27315320|gb|AAO04455.1|AE016746_245 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis ATCC 12228]
 gi|281295411|gb|EFA87938.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|329736177|gb|EGG72449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU028]
          Length = 449

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 146/343 (42%), Gaps = 54/343 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115
           + G E I  S  +SL D    I  N  I     ++ + T + L +      S L  + P 
Sbjct: 54  SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEATNRGLKILTEVELSYLISEAP- 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174
            I+AVTGT+GK++V S +  + Q+S L+    G    ++S  AQ+ +    S  YL   L
Sbjct: 113 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+     E   H         I +I    TN+   H+DYH+T + Y NAK +++
Sbjct: 168 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292
           +     +     Y    Y +  +  + N   +      Q +   I++K    + N  ++ 
Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  KD      LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 265 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
            R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 319 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355


>gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 12P80B1]
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 24  QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           QW      E+      +D+R IQAG +F+AI G + D H FI  A  QGA A +V     
Sbjct: 21  QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137
                  +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I 
Sbjct: 78  ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131

Query: 138 QRSGLSSFQIGPT 150
                   QI PT
Sbjct: 132 S-------QIAPT 137


>gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
          Length = 452

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 156/388 (40%), Gaps = 45/388 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV--VSSAYSLQDFSATIRSN 89
           +VS+DSR   +  +F+A+ G K +GH F+ +AI QGA  ++  V S  SL+         
Sbjct: 27  DVSTDSRDDLSNKLFLALRGEKFNGHSFVDKAIDQGASGVLVDVDSGVSLE--------- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SS 144
            P +VV NT       A  L       + ++TG++GK+SV  ++ Q  +  G      S+
Sbjct: 78  -PRIVVHNTLLAYHDIARFLRDAFQGRVFSITGSNGKTSVKDWLAQSLEDFGCVLKTQSN 136

Query: 145 F--QIGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           F   IG   T+     +++     +       +S LS      V +  ++ G        
Sbjct: 137 FNNHIGVPKTLIQIENNHQFAVVEAGTSFPGEISILSKTIHADVVIVTNASGSHLEGFGS 196

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            K IA    +L         T  + ++  +  F++   +    +    + +S  +   + 
Sbjct: 197 TKAIAEEKGDL--------ITYSSLYSKVILNFDDPFFEYWKGLTGKREFFSFSLSDASA 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +     L +G        +  C +H + Q ++           P PG+ QVYNAL   G 
Sbjct: 249 DLYVSDLDLGAS------ESSCIVHFRDQSSLVT--------IPAPGKHQVYNALAVIGA 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM---ILKNIRT 378
            + + +     L  + K   V GR EF  T +    I   Y  +  S+E    +L   + 
Sbjct: 295 LMHVDVHFIDALNKVSKAVQVKGRMEFGLTKNNALLIDDCYNASPTSVEAAIDVLSMQKP 354

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           I    ++   G  GD+++     +GK A
Sbjct: 355 IKKWLVLGALGELGDQEESIHRGLGKYA 382


>gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 144

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 15/130 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +    
Sbjct: 75  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 130

Query: 150 TSTISSFAQD 159
             T S+F  D
Sbjct: 131 --TASNFNND 138


>gi|258511796|ref|YP_003185230.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478522|gb|ACV58841.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 463

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 136/331 (41%), Gaps = 47/331 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V S+A    +          I V+  +     L   R+        +AVTG  G
Sbjct: 62  EGADIVVHSTAVKQDNVELQAARALNIPVIHRSEMLARLMDDRVG-------IAVTGAHG 114

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +    +++GL  +F +G    + +   DN      P  +A+A           
Sbjct: 115 KTTTTSMIAFAMEQNGLDPTFIVG---GVVADLGDNAKAGKGPFVVAEA----------- 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKE 241
                 S G   H    I ++    TN+  DH++++  +   F   +R +E  +   P E
Sbjct: 161 ----DESDGSFLHYRPAIAVV----TNVEPDHLEHYDGK---FENLVRAYETFIRQIPSE 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              ++ ADD   +E+   A    CRV++ G+ +   I  + V       +  + V GK  
Sbjct: 210 GLLVMSADDDKLRELRSAAR---CRVVTYGFAEDADITARHVELGDRASRSDVLVNGKFV 266

Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             L   LPG+  V NAL A  +C+ +G+        L + H    RF+ V   +  G + 
Sbjct: 267 GTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVV---AEVGDVL 323

Query: 360 V--DYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  DYAH    +   +   ++ T  RI+ VF
Sbjct: 324 IVDDYAHHPTEIRATIAAAKS-TGRRIVAVF 353


>gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CNPAF512]
          Length = 479

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 138/335 (41%), Gaps = 20/335 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++I  ++  P       I  +S DSR I +G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DMIAAMAGRPFGALPEGITGISIDSRSIASGEAFFAIKGDRVDGHDYASMAMANGASLLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VV++    L         +    I+AVTG+ GK++    
Sbjct: 69  VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++ +   SG         ++++SF  +N      P+ LA+ +   +  GV  V +  +  
Sbjct: 125 LRHVLSPSGKVH------ASVASF--NNHWGV--PLTLAR-MPDDTDYGVFEVGM--NHP 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +  +  I+      T +   H+   ++ +    AK  +FE  L      ++  D+  
Sbjct: 172 GEIRPLVAMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEG-LEAGGHVVLNRDNDQ 230

Query: 253 SKEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + + A + G   + S G   K    L +         + +++ G+  +     PG  
Sbjct: 231 FNFLDRTAQSLGIENIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRH 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              NAL A G+   +G D    +  L  L    GR
Sbjct: 291 IAENALAALGVVRIVGADLEKAIAALATLKPEKGR 325


>gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
 gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 24  QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           QW      E+      +D+R IQAG +F+AI G + D H FI  A  QGA A +V     
Sbjct: 21  QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137
                  +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I 
Sbjct: 78  ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131

Query: 138 QRSGLSSFQIGPT 150
                   QI PT
Sbjct: 132 S-------QIAPT 137


>gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 528

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 153/374 (40%), Gaps = 52/374 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA  G   DGH F+  A+ +GA A++ +   + +    T R + P + V
Sbjct: 41  DSRDAAAGALFVAFPGEAADGHDFVQAAVDKGAVAVLAAPDDAYRK-PWTARGSVPTVTV 99

Query: 96  DNTR--KFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
            +    + LS  A+    + P   ++ +TG++GK++    + ++ +       ++GPT +
Sbjct: 100 GDGDLLRALSALATAHLARLPRTTVIGLTGSAGKTTTKDLIGRLTR-------ELGPTVA 152

Query: 152 TISSFAQDNRLTTPSPI--------YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              SF  +N L  P  +        YL   ++ + ++G+ H+          +H      
Sbjct: 153 PKGSF--NNELGFPITVLRTDEDTRYL---VAEMGARGIGHI----------KHLTTIAP 197

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEV 256
              G   N+G  H+    + +A   AK  L   +         ++  AI+ ADDA  + +
Sbjct: 198 PRIGVVLNVGSAHLGEFGSVEAIAEAKGELAAAVPESGNCNPDRDGVAILNADDARVRGM 257

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------FDFLFPLPGEF 310
             R      RV+  G         +   + +  + + ++  +D      +     L GE 
Sbjct: 258 AARTKG---RVVLFGESPDADVRAEDVRVGSDGRASFTLLYRDGEGPHRYPVALRLVGEH 314

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
           QV NAL AA   + +G+    V E L            +G ++ G  +  D Y     S+
Sbjct: 315 QVSNALAAAATGLELGLAGEKVAEVLSAAEPDSKWRMAIGESADGVTVLNDAYNANPESM 374

Query: 370 EMILKNIRTITSGR 383
              LK + T+   R
Sbjct: 375 RAALKTLATMARAR 388


>gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
 gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
          Length = 477

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 105/255 (41%), Gaps = 33/255 (12%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           LIY DF     ++    +  R + ++ V   DSR +  G +FVA+ G + DGH F+    
Sbjct: 5   LIYSDFNR-AGRIEASDVDERYQLVDPVVVIDSRKVVEGAVFVALPGERTDGHRFVGAVF 63

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA   VVSS +  Q  S         LV D+        A+    +    ++ + G++
Sbjct: 64  ANGASWAVVSSEWFSQHGSEHRGEGRRFLVADDPVAAFQQLATAYRERFDIPVIGIGGSN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGV 182
           GK++    V  +      ++F++     ++    +N L  P  ++  +  + ++    G+
Sbjct: 124 GKTTTKEMVAAVLS----TAFKV----RVTQGNYNNHLGVPLTLFQLRRDTEMAVIEMGI 175

Query: 183 TH-------VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            H        S+   +HGL               TN+G +H+++  +      A+  LF+
Sbjct: 176 NHPGEMAFLASIARPTHGL--------------LTNIGHEHLEFFGSLDGVAKAEAELFD 221

Query: 236 ELLPKESPAIIYADD 250
            L      A +  DD
Sbjct: 222 YLEVSGGTAFVNLDD 236


>gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 46P47B1]
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 24  QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           QW      E+      +D+R IQAG +F+AI G + D H FI  A  QGA A +V     
Sbjct: 21  QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137
                  +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I 
Sbjct: 78  ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131

Query: 138 QRSGLSSFQIGPT 150
                   QI PT
Sbjct: 132 S-------QIAPT 137


>gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
 gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
          Length = 488

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 148/375 (39%), Gaps = 52/375 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV--VSSAYSLQDFSATIRSNT 90
           V++DSR +  G +FV +VG  +DGH +I QA+ QGA  +   + S   L         N 
Sbjct: 45  VTTDSRTVTDGSLFVPLVGETQDGHKYILQALEQGARVVFADLESYECLAGLFMDFLENY 104

Query: 91  P---ILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           P    +VV NT   L   A+    K P+ I + +TG+SGK++    +  +  R       
Sbjct: 105 PDAVFIVVKNTLTALQCAAAAYVKKFPDLIKIGITGSSGKTTTKELIAAVLSRK------ 158

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T  ++    ++    P  ++  +A          H   E     +  +R   I  +A
Sbjct: 159 --YTVVMNEGNLNSETGLPLSVFKIRA---------EH---EVGIFEMGMNRKGEIAELA 204

Query: 207 GSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+G  HI    ++ A    K ++F      +  A I A D Y+  +   
Sbjct: 205 NVLCPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSR-FTADCVAFIPAADPYADFL--- 260

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A N G  V+  G     ++   V  I N          +    L PLPG     +AL AA
Sbjct: 261 AENCGGTVVRYG-----VNTDPVSRIKNAGLAGTEFLYRQVPILLPLPGAGNFSDALAAA 315

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNI 376
            L   +G  +  +   LE +  + GR + +     GG + V    Y    +S+E  L   
Sbjct: 316 SLASYMGFGADDIKAGLESVRPLFGRSQII-----GGPVSVVQDCYNANPDSMEQALDFF 370

Query: 377 RT--ITSGRIIVVFG 389
            +  I  GR I V G
Sbjct: 371 ASLDIEPGRKIAVLG 385


>gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 103P14B1]
 gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis O35E]
 gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 101P30B1]
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 24  QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           QW      E+      +D+R IQAG +F+AI G + D H FI  A  QGA A +V     
Sbjct: 21  QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137
                  +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I 
Sbjct: 78  ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131

Query: 138 QRSGLSSFQIGPT 150
                   QI PT
Sbjct: 132 S-------QIAPT 137


>gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
          Length = 466

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 167/407 (41%), Gaps = 55/407 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +S D+R ++AG +FVA+   + DGH F+ QA+ +GA A +V+  +   D    +  
Sbjct: 23  QVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQALEKGAGAALVT--HRPDD----VAE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P+L+V++ +  L         +    ++AVTG+ GK+S    +  +    G +   + 
Sbjct: 76  DAPLLIVEDVQAALEALGQAARARTSARVVAVTGSVGKTSTKEMLATMLADQGRTHAAVA 135

Query: 149 PTST----ISSFAQDNRLTTPSPIYLA----KALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +       + A+  R T  + I +       ++ L+ Q   HV++             
Sbjct: 136 SYNNHWGVPLTLARMPRETEFAVIEIGMNHPGEIAPLARQARPHVAM------------- 182

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    T +   H++           K  + E L P    A++  D A ++ + + A
Sbjct: 183 --------VTTVAAVHLEAFDDVAGIAREKAAIMEGLEPG-GVAVLNGDIAEAQVLKEEA 233

Query: 261 HNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              G + L  G  G+   L   ++   H   QV I  +GK  +      G     NAL  
Sbjct: 234 ERLGVQHLWFGESGQGYRLLETRLEGEHTLAQVEI--DGKPLELRIQSLGAHFAMNAL-G 290

Query: 319 AGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEM----- 371
           A +C+A +G D+    + L     V GR   V     GG+I + D ++ +N   M     
Sbjct: 291 ALVCVAGLGGDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALE 350

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTD 417
           +L        GR I   G     D G+  P   ++   +AD+  V+D
Sbjct: 351 VLAATPNPEKGRKIAYLG-----DMGELGPKEAELHRGMADLKAVSD 392


>gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 7169]
 gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC1]
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 24  QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           QW      E+      +D+R IQAG +F+AI G + D H FI  A  QGA A +V     
Sbjct: 21  QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137
                  +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I 
Sbjct: 78  ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131

Query: 138 QRSGLSSFQIGPT 150
                   QI PT
Sbjct: 132 S-------QIAPT 137


>gi|325203527|gb|ADY98980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240355]
          Length = 445

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++F      +   ++ ADD +    MKRA     +  S+ ++  F   ++   +    + 
Sbjct: 209 KIFR----GDGVQVLNADDTFCC-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ +        PL G     N + A  LC A+G+    +LEH++    +P R E +G 
Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPHRVEKIG- 315

Query: 352 NSRGGRIYVDYAHTSN 367
             + G +++D +  +N
Sbjct: 316 -EKNGVVFIDDSKGTN 330


>gi|302206518|gb|ADL10860.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|308276760|gb|ADO26659.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 485

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 19/197 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+ ++++AYF    +  + L+P  S  ++  DD ++  + ++ H     +  
Sbjct: 189 TNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVS-LVVCLDDPHTAMLGQKIHEKHKDIKV 247

Query: 270 VGY-----QGKFIHLKKVCA-----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           VGY       ++  + K         H+    TI V G++ + +   PG   V NA  A 
Sbjct: 248 VGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAAAAL 307

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNSLEMILKN 375
              +  G D   +   +     V  RFE+ G  + G      +Y DYAH    +  +L  
Sbjct: 308 TAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAVLTA 367

Query: 376 IRTIT----SGRIIVVF 388
            R        GR++V+F
Sbjct: 368 ARAKLQARGQGRLLVIF 384


>gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC8]
          Length = 496

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 24  QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           QW      E+      +D+R IQAG +F+AI G + D H FI  A  QGA A +V     
Sbjct: 21  QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137
                  +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I 
Sbjct: 78  ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131

Query: 138 QRSGLSSFQIGPT 150
                   QI PT
Sbjct: 132 S-------QIAPT 137


>gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
 gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
          Length = 460

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 130/329 (39%), Gaps = 26/329 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R+I +  +F+A+ G + D H F   A   GA+A++VS    ++         
Sbjct: 24  IAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSKPLPVE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            P LVV +TR  L +  + L  +  E      LA+TG+ GK++V      I    G    
Sbjct: 75  LPQLVVSDTRIALGMMGAWLKAQMTEKYGLKTLALTGSCGKTTVKEMSAAILANKG---- 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           Q+   +T  +F  D      +P+ L   L          + + A+      +  + +K  
Sbjct: 131 QV--LATAGNFNND----IGAPLTL---LRLTPEYQYAVIELGANHQNEIFYTTNLVKPN 181

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+   H++   + Q    AK  +FE L+   +  I +  +  +      A +   
Sbjct: 182 VALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINFESNDLALWQPLLAEHQVL 241

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              +  +Q  +   K           T+       D    L G   V NAL AA L +++
Sbjct: 242 TFSTDSHQADYFAEKIKITTQGLACFTMCTPIGKIDINLALAGMHNVSNALAAAALTVSL 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G   A V   LE +  V GR +     +R
Sbjct: 302 GATLADVKAGLETMANVKGRLDITEPYAR 330


>gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine
           bacterium HP15]
          Length = 462

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 133/321 (41%), Gaps = 29/321 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R ++ G +FVA+ G   DGH F+ QA+ +GA  +VV +     D +  +    P 
Sbjct: 31  VSTDTRTLEPGQLFVALRGENFDGHRFLQQAMDKGAVGLVVDT----PDTNLAL----PQ 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV+ T + L+  A+    +    ILA+TG+SGK++V      I  + G          T
Sbjct: 83  LVVNETLEALARLAAANREESTAAILAITGSSGKTTVKEMCAAILSQMG---------KT 133

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           +S+    +N +  P  ++    LS     GV  + + AS  G   H +   K      TN
Sbjct: 134 LSTKGNLNNHIGVPLTLF---GLSPEHQYGV--IELGASGLGEIAHTVALAKPRVAILTN 188

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            G  H++   + +    AK  + +  +  +   ++  DD    +   RA     RV  V 
Sbjct: 189 AGEAHLEGFGSYENIVLAKGEIIDG-VASDGLMVLNGDDPAFAQWRSRA--GARRVAGVS 245

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G       V    +    T  V G D         L G+  + N L+A      +G  
Sbjct: 246 RLGAEADYHAVIDGQDAGTRTFQVSGPDGWLCRVTLGLEGDHNITNMLLAIAATRELGAS 305

Query: 329 SALVLEHLEKLHVVPGRFEFV 349
              ++  L  +  V GR + +
Sbjct: 306 DQAIVAGLASVAPVKGRLQVL 326


>gi|240147080|ref|ZP_04745681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
 gi|257200757|gb|EEU99041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
          Length = 100

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           MG+ A  LAD  I+T DNPR EDPE I  +I  GI G    +I   +R  A+  A +   
Sbjct: 1   MGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHAR 60

Query: 458 KQDVLVVAGKGHE 470
           + D++V+AGKGHE
Sbjct: 61  EGDIIVLAGKGHE 73


>gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
          Length = 468

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 152/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS +        T   N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRS--------TGEWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGVRAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETDALAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G        V  + +  ++ I       D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLYALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A V   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
 gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
          Length = 470

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 160/384 (41%), Gaps = 46/384 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   VS+DSR    G +F+AI G++ D H F+PQ   +   A++V  A + +++      
Sbjct: 25  RFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLV--ARTPENW------ 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           N P + V +TR  L   A     +    ++AVTG++GK++V   +  I   +  +  ++ 
Sbjct: 77  NVPAIRVADTRAALGALARGWRRQFEMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL- 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             +T  +F  +N +  P  ++   A   L+    G+ H      +  L +     + ++ 
Sbjct: 136 --ATAGNF--NNDIGLPLTLFRLHAAHRLAVVELGMNH---PGETELLAKLAEPTVAVV- 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVM 257
               N  R+H ++  T +A       +   L P+ + A+  ADDAY+           ++
Sbjct: 188 ---NNAQREHQEFMATVEAVALEHASVIHALSPQGT-AVFPADDAYASIWRVAATGNRII 243

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             A N+  R      +G F          + ++++I       D    + G    +NAL 
Sbjct: 244 DFALNSAERTTEAAVKGTF----------DGKRLSIDTPQGRVDVTLQVLGNHNAHNALA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMIL 373
           A    +A G+    +   LE    V GR +       +  G   +D  + +N  S+   +
Sbjct: 294 ATSAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGTLAGATVIDDTYNANPDSMRAAI 353

Query: 374 KNIRTITSGRIIVVFGCGGDRDQG 397
             + +  S R++V+   G   D G
Sbjct: 354 DVLASRASPRVLVMGDMGEVGDNG 377


>gi|114773353|ref|ZP_01450557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
 gi|114546287|gb|EAU49198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
          Length = 468

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 118/288 (40%), Gaps = 41/288 (14%)

Query: 93  LVVDN-TRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +VVDN    F   FA++ +        ++ VTG++GKS+  + +  + + S         
Sbjct: 95  VVVDNDVGLFFRSFATQEWDNFDVMPKVICVTGSNGKSTTTALIAHLLEGS--------- 145

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                     NR    +       L    +Q  T V +E SS+ +D  R   +      F
Sbjct: 146 ----------NRKVVVAGNIGRGVLDIPPAQDGTIVVLELSSYQIDLAR--ALAPDIAVF 193

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNAGCR 266
            NL  DH+D H     YF AK RLF +  P    AII  D+    + +  +++   +G  
Sbjct: 194 INLSPDHLDRHNGMGGYFYAKRRLFIDGNPDR--AIIGVDEIEGQFLENQLRQDAKSGEP 251

Query: 267 VLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           V+SV    K           K   A   K +   S+   D   +  LPGE    NA  A 
Sbjct: 252 VISVSVNSKLQNNGWSVFSRKGFLAEWRKGRQVASI---DLRSMSGLPGEHNHQNACCAY 308

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +C +IG+   L+ E L     +  R + VGT +  G +YV+ +  +N
Sbjct: 309 AVCRSIGLAPKLIEEKLNSYVGLTHRCQTVGTFN--GVMYVNDSKATN 354


>gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
          Length = 457

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 136/346 (39%), Gaps = 30/346 (8%)

Query: 23  MQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           ++W +E +++ V  DSR  +   +F A+ G + +GH F   A   GA A+VV       D
Sbjct: 18  IRWGKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGACAVVVKREIEGAD 77

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      + V++T K L   A     +     +A+TG++GK++       +  +  
Sbjct: 78  CFQ--------IKVEDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMTASVLSK-- 127

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     TI +F      TT  P+ L    +      +  V +  +  G  +   + 
Sbjct: 128 ----KYKTMKTIGNFNS----TTGVPLTL---FNLEQGDEIAVVEMGMNHKGEIEKISEL 176

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      TN+G  HI+   +++  F AK  +  + L K    ++  DD + K+      
Sbjct: 177 VEPDLAMITNVGVTHIENLGSKENIFKAKTEI-TKGLKKGGTLLVNGDDEFFKDYTNDEF 235

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N    V+ VG          +       +  +   GK++ F   +P ++ VYNAL A   
Sbjct: 236 N----VVKVGINHGDFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYT 291

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               G++   + E L+       R +    N   G   +D  + SN
Sbjct: 292 GFHFGLNYEQIKEGLDDFMPTGNRMKIEEVN---GITLIDDTYNSN 334


>gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 463

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 137/349 (39%), Gaps = 34/349 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR IQ G +F A+ G + DGH ++  A  +GA   VV S              
Sbjct: 24  VRNVAFDSREIQKGDLFFALKGTESDGHNYVEAAFKRGAAGAVVMSPVPY---------- 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++VD++ + L   A     ++   I+ +TG+ GK+S    ++   +R       + P
Sbjct: 74  -PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALER-------MAP 125

Query: 150 TSTISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                S    N      P+ LA+    +L  +   G+ H    +    L Q  +  I  I
Sbjct: 126 EKVHYSLKSYNN-HVGVPLSLARMPEESLFGIFEMGMNHAGELSDLTKLVQPDVALITAI 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A +       H  +   + A   AK  +FE  L     AII  D  Y   +  +A     
Sbjct: 185 APA-------HAAFFADETAIAEAKSEIFEG-LSSGGIAIIPHDSPYRDLLTAKAQEKKA 236

Query: 266 RVLSVGY-QGKFIHLKKVC-AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            + S G+ +G  I  + +      +  VT S+  +   F   +  E  + NA+    +  
Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAMAVLAVVD 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM 371
           A+G D  L    L  +    GR + F      G  I +D ++ +N   M
Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASM 345


>gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
 gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
          Length = 455

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 147/371 (39%), Gaps = 36/371 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ I  V  DSR      +F+ + G + DGH F+  A+A GAEA +    +        
Sbjct: 20  EDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHE------G 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + ++ P++ V++    L   A    GK    ++ +TG++GK++    V  +  +     F
Sbjct: 73  MPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSK----RF 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +  T   ++F  +N +  P  I     L    S  +  + +     G   H  + ++  
Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +G  HI++  T+    +AKM + + L  KE    IY  D    E  +RA     
Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G++ +      +   +     T  V G    F  P+ G+  V NAL A  +    
Sbjct: 236 EKSTFGFREEDTVFATIFRSY-MHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITSGR 383
           G +   + + L        R ++     +G  G   +D  + SN        +R +T+  
Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VRAVTTSF 345

Query: 384 IIVVFGCGGDR 394
             V+   GG R
Sbjct: 346 GQVMVEDGGRR 356


>gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 456

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + VS+DSR IQAG +FVA+ G + DGH ++ Q  A+GA   +V          AT+  
Sbjct: 24  RFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVE----GATL-- 77

Query: 89  NTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             P LVV +TRK L+ L A        + + AVTG+SGK++V   +  I +  G
Sbjct: 78  --PQLVVLDTRKALAQLGAMNRNAFVDKPVAAVTGSSGKTTVKEMLASILRTRG 129


>gi|120404494|ref|YP_954323.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
 gi|189029002|sp|A1TAW7|MURC_MYCVP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119957312|gb|ABM14317.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 478

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 15/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+  + +AY     R    + P  +  ++  DD  ++ + +R   +G RVL 
Sbjct: 193 TNIEADHLDFFGSVEAYTEVFDRFAGRIDPGGA-LVVCVDDPGARALAERLSGSGLRVLR 251

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV-------EGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G  G          +   QQ T +V       E +       +PG     NAL A    
Sbjct: 252 YGSTGT--GALDATLLEWTQQGTGAVASIALRTEARPLTMRLSVPGRHMALNALGALLAA 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
              G D   VL+ L     V  RFE VG ++ G R++ DYAH    +   L  +R +   
Sbjct: 310 REAGADLESVLDGLAGFEGVRRRFELVG-SANGVRVFDDYAHHPTEVRATLTALRAVVDQ 368

Query: 381 --SGRIIVVF 388
             SGR IVVF
Sbjct: 369 AGSGRAIVVF 378


>gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 479

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 150/360 (41%), Gaps = 42/360 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  IN++  DSR I AG +F+ + G + DGH FI  A   GA A      ++ +D  A
Sbjct: 43  YEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFENGALA-----TFTEKDLPA 96

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ILV D    F  L A  L  K   +++AVTG++GK++    +  I      ++
Sbjct: 97  ---DQAHILVDDALEAFQKLAAYYLE-KTGVDVIAVTGSNGKTTTKDMIHDILA----TT 148

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
           ++   T        +N +  P   Y A  +   + + V  +      H  D H L  + K
Sbjct: 149 YRTYKTQG----NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSTLAK 198

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRA 260
                 T +G  H+++  ++      KM++ ++ +P  S  ++ +D   D +    ++  
Sbjct: 199 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPSDPIVDPFLPSNLEVV 257

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  L+V    +F           K  +T S    D     P+ G++   NA+VAA 
Sbjct: 258 RFGDGAELTVSELTEF-----------KDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAY 306

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           +   +G+    +L  L  L +   R E+    + G  I  D Y     ++++IL+    I
Sbjct: 307 VAKHLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLILETFSAI 365


>gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
 gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
          Length = 479

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 157/390 (40%), Gaps = 61/390 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-----------AEAIVVSSAYSLQDFSA 84
           D+R +  G +F+A+ G + DGH F  +A+  G           A AIVV      Q  S 
Sbjct: 8   DTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAAREVDAPAIVVPPLPPGQANSG 67

Query: 85  TIR---------SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           ++          +     +    R  +   A+         ++ VTG+SGK+S    + Q
Sbjct: 68  SVALTGDTDGSGAAVLAALAKLARHVVDRLAAGGL-----TVIGVTGSSGKTSTKDVIAQ 122

Query: 136 ICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEA 189
           + +        +GPT +   SF  ++ L  P     A A +      +S++GV H++  A
Sbjct: 123 LIE-------PMGPTVAPPGSF--NSELGHPWTALRADASTKFLVLEMSARGVGHIAAAA 173

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            +      R+       G+  N+G  H+    +++    AK  L E  LP++  A++  D
Sbjct: 174 ET---TPPRI-------GAVLNVGSAHVGEFGSREGIAKAKGELVEA-LPEDGLAVLNLD 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPL 306
           D     +  R      R++ VG   G  I    +      +     I+ EG +     PL
Sbjct: 223 DPLVAAMASRTK---ARIVGVGESAGAQIRAADITVDAEARPSFRLITPEG-EAPVTLPL 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            GE  V NAL AA +   +G  +  + + L  L     R   V T + G  I  D Y   
Sbjct: 279 HGEHHVGNALSAAAIARELGATTEEIAQRLSSLQRRSERRMEVTTRADGVTILNDSYNAN 338

Query: 366 SNSLEMILKNIRTIT-SG-RIIVVFGCGGD 393
             S+   LK + +++ SG R   V G  G+
Sbjct: 339 PESVRAGLKALASMSRSGRRAWAVLGVMGE 368


>gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 242

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 15/130 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 33  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +    
Sbjct: 84  LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 139

Query: 150 TSTISSFAQD 159
             T S+F  D
Sbjct: 140 --TASNFNND 147


>gi|300858813|ref|YP_003783796.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686267|gb|ADK29189.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331073|gb|ADL21267.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 485

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 19/197 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+ ++++AYF    +  + L+P  S  ++  DD ++  + ++ H     +  
Sbjct: 189 TNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVS-LVVCLDDPHTAMLGQKIHEKHKDIKV 247

Query: 270 VGY-----QGKFIHLKKVCA-----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           VGY       ++  + K         H+    TI V G++ + +   PG   V NA  A 
Sbjct: 248 VGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAAAAL 307

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNSLEMILKN 375
              +  G D   +   +     V  RFE+ G  + G      +Y DYAH    +  +L  
Sbjct: 308 TAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAVLTA 367

Query: 376 IRTIT----SGRIIVVF 388
            R        GR++V+F
Sbjct: 368 ARAKLQARGQGRLLVIF 384


>gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 489

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR I  G +FVAI G + DGH F+P+  AQGA A +V    +         +  P +V
Sbjct: 34  TDSRQIVPGSVFVAIAGERVDGHDFVPKVGAQGAVAALVDHEIA--------GAQVPQIV 85

Query: 95  VDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           V+NT K L   A      R   + P  ++ +TG+ GK++    ++ +  + G +   +G
Sbjct: 86  VENTVKALGALAKHNIERRRALESPFTVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVG 144


>gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
 gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
          Length = 487

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 150/387 (38%), Gaps = 56/387 (14%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   S D+R ++ G +F AI G   DGH F+  A+ +GA A VV+   + ++F     
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALDKGAGAAVVAEVRA-KEFEGV-- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              P+L V        L A R  G     +    I+AVTG+ GK+     ++ +    G 
Sbjct: 82  --GPVLAVPGEGDDPVLDAMRRLGLAARARTGAAIIAVTGSVGKTGTKEALRHVLSAQGA 139

Query: 143 SSFQI-------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +       G   T++   +D R                   GV  + +   +HG +
Sbjct: 140 THASVASYNNHWGVPLTLTRMPEDTRF------------------GVFEIGM---NHGAE 178

Query: 196 QHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              L   ++      T +   HI++ ++  A  +AK  +F  L P    A+I  D+   +
Sbjct: 179 ILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPG-GVAVINRDNPNYE 237

Query: 255 EVMKRAHNA-GCRVLSVGYQGKFIHLKKVCA--IHNKQQVTI---SVEGKDFDFLFPLPG 308
            ++  A  +   RV++ G          VCA  I  +  V++   +V G    +    PG
Sbjct: 238 RLLAHAQASRAGRVITFGEH----EAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSN 367
                N+L       A+G D A     L  L    GR E        G  + VD ++ +N
Sbjct: 294 RHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNAN 353

Query: 368 SLEM-----ILKNIRTITSGRIIVVFG 389
              +      L  I T   GR I V G
Sbjct: 354 PASIRAALATLAGIDTGAKGRRIAVLG 380


>gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
          Length = 426

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 100/453 (22%), Positives = 185/453 (40%), Gaps = 71/453 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           +S+ ++ G +FVA+ G + DGH FI +A+  GA A++            T+ S+  I +V
Sbjct: 12  NSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERK--------TVNSDR-IFLV 62

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +++   L+  A    G     ++ VTG+SGK++    +  + +            +  S 
Sbjct: 63  ESSVDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLK------------NKRSV 110

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F     + T   + L+  L+    + +  + + AS  G   H             N+G  
Sbjct: 111 FKTPGNMNTEYGLPLS-ILNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNVGNA 169

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+++  T++     KM +  +   + + A+ + DD+  +  + R      + L  G +  
Sbjct: 170 HLEFFGTRERIMETKMEII-KYSKENATAVTFFDDSDLRREVPRYR----KTLFFGKESG 224

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF---QVYNALVAAGLCIAIGIDSA 330
              LK           TI+ E + F+ LF   L G +   Q+ N  +AA LC+   +   
Sbjct: 225 DSVLKGWWYYEGS---TIA-EFEAFESLFTVKLSGYWNGGQLLN--IAASLCVMRALGET 278

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSGRI 384
           + +  L  L  VPGRF       + G + VD  + ++      S+E +L+       G+ 
Sbjct: 279 VDIFDLASLKTVPGRF---NVREKEGVLIVDDTYNASPEAFQTSIEALLR-----FPGKK 330

Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEKIR 429
             V G     G+R +     +GK  L++ D   V    P            +S+DPE I 
Sbjct: 331 FAVVGAMKELGERSKEFHEELGK-RLNVLDGVYVFLSEPEAEWIKSEKIILKSDDPEDIA 389

Query: 430 AEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
            ++   +      + K +R   I   +EM  K+
Sbjct: 390 KDLAARVTEGDVVLFKASRAVRIERVLEMFEKE 422


>gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
 gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
          Length = 489

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR I  G +FVAI G + DGH F+P+  AQGA A +V    +         +  P +V
Sbjct: 34  TDSRQIVPGSVFVAIAGERVDGHDFVPKVGAQGAVAALVDHEIA--------GAQVPQIV 85

Query: 95  VDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           V+NT K L   A      R   + P  ++ +TG+ GK++    ++ +  + G +   +G
Sbjct: 86  VENTVKALGALAKHNIERRRALESPFTVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVG 144


>gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
 gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
          Length = 453

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 13/118 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+RHI    +F+A+VG + D H F  QA+  GA A++V  A  L           P+
Sbjct: 27  VSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAIALLVERALDL-----------PV 75

Query: 93  --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             +VV +T+  L    + ++ +     +A+TG+ GK++V   V  I Q+ G   F  G
Sbjct: 76  AQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVASILQQKGKVLFTAG 133


>gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 477

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 168/386 (43%), Gaps = 53/386 (13%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           PM++ ER    +S DSR I+   +F+AI G   DGH FI  A+ QGA  I+  S  SL +
Sbjct: 40  PMEF-ER----ISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGII--SELSLAE 92

Query: 82  FSATI-----RSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            + T+      ++   + V NT   L++   +R + +  E ++ +TG+ GK++    ++ 
Sbjct: 93  VANTLGNIVFGTDFSFIKVPNT--ILAMHDIARGFRQRIEKVIGITGSVGKTTTKEILKT 150

Query: 136 ICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +     L  +Q     T+S+F   +N +  P  ++ AK        G+  +++ +     
Sbjct: 151 L-----LKGYQ-----TVSTFGNFNNEIGLPLSLFRAKKNDKF---GIFEMAMRSKG--- 194

Query: 195 DQHRLDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +  +L  I +   G  T +   HI    + +    AK     E+L     A +  +  YS
Sbjct: 195 EISQLCSIAMPDIGIITRIAESHIGLLGSMENIARAK----GEILDFVDSAFLNFNCKYS 250

Query: 254 K----EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +    E++K        V+  G +           IH  +   + + G+  +F+   P  
Sbjct: 251 RKIFGEMLKDKKGKPKEVIWFGKESDLYIKSHEIFIHGSR---LELSGRFGNFVLRAPNI 307

Query: 310 F--QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHT 365
           F  Q    L +  +   +G+D   + ++L+  H + GRF        G +I +D  Y  T
Sbjct: 308 FLPQFEPLLASVAVARFLGLDWNEINDNLQGYHPLQGRFL---IKKLGDQIVIDDSYNAT 364

Query: 366 SNSLEMILKNIRTITSG--RIIVVFG 389
             S    L+ I+++  G  R I VFG
Sbjct: 365 CTSFLKGLETIKSLKFGNRRKIFVFG 390


>gi|300933358|ref|ZP_07148614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium resistens DSM 45100]
          Length = 516

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 162/399 (40%), Gaps = 76/399 (19%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ-----------GAEAIVVSSAYS 78
           +  V  DSR I+ G IF+A+ G + DGH +   A  Q           GA A+V  S   
Sbjct: 40  LGPVEFDSRRIKPGGIFMALPGAQVDGHDYAASAAEQGAALLVVGKRVGAPALVAPSVEL 99

Query: 79  LQDFS--ATIRSNTP------ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            Q+ S  +    +T       +  +D   +F +     L  +H   ++ VTG++GK+S  
Sbjct: 100 RQEASNASAFEHDTQGHGAAVLAAIDRLARFNT---DALVAEHGMTVVGVTGSAGKTSTK 156

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHV 185
             +  I + +G +   + P  +      +N +  P     A+      +S +S++GV H+
Sbjct: 157 DLIGAILREAGPT---VAPPGSF-----NNEIGLPYTALRAEEGTKYLVSEMSARGVGHI 208

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                     +H  +      G   N+G  H+    ++ A   AK  L E  LP+   A+
Sbjct: 209 ----------RHLTEVTPPNIGVVLNVGSAHLGEFGSRDAIAQAKGELVEA-LPENGLAV 257

Query: 246 IYADDAYSKEVMKRAH---------NAGC----RVLSVGYQGKFIHLKKVC----AIHNK 288
           + ADD     +  R H            C    R ++V Y    I L +V     A+H+ 
Sbjct: 258 LNADDDKVAAMAARTHARVVRFSTSQETCEWAGREVAVDYYASDIQLDEVARARFALHHP 317

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRF 346
               ++VE   F       G  QV NAL AA + +  G+ +  V   L   HV     R 
Sbjct: 318 YGDPVAVELGVF-------GAHQVSNALAAAAVGMECGMSATDVARALNG-HVAASVNRM 369

Query: 347 EFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383
           + V T +R G   ++ ++ +N  S+   +  +    SGR
Sbjct: 370 D-VRTRARDGVTIINDSYNANPESMRAGIDALAYTASGR 407


>gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 473

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 132/328 (40%), Gaps = 50/328 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSATIRSNTP 91
           DSR I  G IF A+ G   DGH F+  A   GA   VVS+ +         +A   +   
Sbjct: 34  DSRKISGGEIFFALKGEHTDGHAFVQTAFENGAALAVVSTEWFENTRQAQPNAHFFTENL 93

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L V +    L   A+R   K P  I+ + G++GK++       +      ++F++   +
Sbjct: 94  FLSVQDPLVALQKLANRYRKKFPIPIVTIAGSNGKTTTKEMTAAVLG----TTFRV--VA 147

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T  +F  +N +  P  ++  +  + ++    G+ H       HG         +   G  
Sbjct: 148 TEGNF--NNHIGVPLTLFRLRDDTEIAVVEMGINH-------HGEMNELCQIAEPTHGLI 198

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-----MKRAHNAG 264
           TN+G +H ++  T +    A+  L+  L        + ADD  + +      ++  +   
Sbjct: 199 TNIGHEHCEFLGTPEEIAMAEGELYRYLSRTGGSGFVNADDGLASQTAGELNLQTLYGIE 258

Query: 265 CRVLSVGYQGKFIHLK-------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              L +    K + L        K+C    KQ +T++++         + G   VYNAL 
Sbjct: 259 QPNLGLNIWAKEVQLNQQGCASFKICT--PKQALTLNLQ---------ISGRHNVYNALA 307

Query: 318 AAGLCIAIGIDSALVLE--HLEKLHVVP 343
           AA    AIG++    LE   L   H VP
Sbjct: 308 AA----AIGLNFGAKLESVKLALEHFVP 331


>gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
 gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
          Length = 470

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 143/359 (39%), Gaps = 39/359 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR--SNT 90
           V+ DSR + AG +FVA+ G + DGH ++P     GA              S T R     
Sbjct: 30  VAKDSREVVAGGLFVALPGERVDGHDYVPAVTEAGAT------------VSLTTRPVDGC 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P +VV +T+  L   A  +  + PE  ++ +TG+ GK+S    + Q+    G +   + P
Sbjct: 78  PCIVVADTQVALGELARYVVAQLPELTVIGLTGSQGKTSTKDLIAQLVAPYGPT---VAP 134

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207
           T +      +N +  P + +   +   YL ++ G  H+   A    +   ++       G
Sbjct: 135 TGSF-----NNEIGHPLTALQADRDTRYLVAEMGARHLGDIAYLCRITPPKV-------G 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  HI    ++ A   AK  +   + P  + A++ ADD     +  R      R 
Sbjct: 183 LVLNVGYSHIGEFGSRDAIAQAKGEMIANVAPGGT-AVLNADDPRVAAMASRTEQT-IRT 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +              +   T+  +G+ F     L GE  V NAL AA   +A+G+
Sbjct: 241 FGEAPEADVRATDLEVDGEGRPGFTLHADGQSFPVQLQLIGEHNVSNALAAATAALAVGL 300

Query: 328 DSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383
               V + L     V   R E V      G   ++ A+ +N  S+   LK +  I   R
Sbjct: 301 TPEQVADGLNAAARVSQARMEVV--ERPDGVTVINDAYNANPDSVRAALKALVAIGRAR 357


>gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum Nigg]
          Length = 450

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y   D+     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRGPDYGLQ-- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQI 136
               +L V + R+ L   A R  G   H E ++ +TG+ GK++  SF QQ+
Sbjct: 81  ----LLHVADPREALRA-AGRTQGALFHGE-VIGITGSVGKTTTKSFTQQL 125


>gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
 gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
          Length = 500

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 28/243 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R I+ G IF+AI G+  DGH ++  A  +GA   +VS A         + S+ P
Sbjct: 32  KIITDTRKIEQGDIFLAIQGDNFDGHDYVKTAKDKGAVLAIVSRA---------VESDLP 82

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            LVV +T+  L    +    +HP   ++A+TG+SGK++    +  I  R       I PT
Sbjct: 83  QLVVTDTKLALGKLGAYRRDQHPNLKVVAITGSSGKTTAKEMLGSILNR-------IAPT 135

Query: 151 STISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             I+    +N L  P  +  L  A  Y   + G  HV   A +  L       +K     
Sbjct: 136 -LITRGNLNNDLGVPMMLLELTDAHRYAVMELGANHVGEIAYTTQL-------VKPDVAC 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+     +      K  +++ L    +  + + DD Y   ++  A      +L
Sbjct: 188 VLNIGTAHLGEFGGRDNIAKTKSEIYQGLSDAGTAIVPFGDD-YFDTLLNNAQQFTQNIL 246

Query: 269 SVG 271
           + G
Sbjct: 247 TFG 249


>gi|220912337|ref|YP_002487646.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859215|gb|ACL39557.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 525

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 42/278 (15%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+    R  G+   + LA+TGT+GK++     + + + +GL +  +G             
Sbjct: 126 LAWRVRRREGRKTADWLAITGTNGKTTTVGLTESMLRAAGLKAIAVG------------N 173

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +  P    + + + Y         +VE SS  L  H  + +  +A    N+  DH+D+H 
Sbjct: 174 VGKPILDAIREPVEY------DVFAVELSSFQL--HWAESLSPLASVCLNVAEDHVDWHG 225

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFI 277
           +  +Y   K +++E    +   A +Y  + +  E M    NA    GCR  ++G+     
Sbjct: 226 SYDSYLADKAKVYE----RTQKACLYNAEQFETERM--VENADVVEGCR--AIGFTTVTP 277

Query: 278 HLKKVCAIHN--------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +  +  +          +++   + E      L P+     V NAL AAGL  A G+D+
Sbjct: 278 AISMLGVVEGLLVDRAFIEERRDSAAELAAMADLGPIAPRHMVANALAAAGLVRAYGVDA 337

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           A V + +     VPG           G ++V+ +  +N
Sbjct: 338 AAVRQGIRDY--VPGDHRIQPVARHEGVLWVNDSKATN 373


>gi|114045897|ref|YP_736447.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
 gi|123326953|sp|Q0HZR5|MURC_SHESR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113887339|gb|ABI41390.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
          Length = 488

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 54/326 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ +VVS+A + ++          I +V        L   R +G      +A+ GT G
Sbjct: 78  QQADVVVVSTAINPENPEIIAAKELRIPIVRRAEMLAELMRYR-HG------VAIAGTHG 130

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S +  +  ++G   +F IG    ++S   + RL T S   +A+A     S+L  Q
Sbjct: 131 KTTTTSLIASLYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADESDASFLHLQ 187

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D +        +    F   LP 
Sbjct: 188 PMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295
              A++  DDA  +E+M R    G  +++ G+         V A++  QQ      T+  
Sbjct: 225 YGVAVVCIDDAVVREIMPRI---GRHMITYGFSDD----ADVQALNFHQQGHQCRFTVRR 277

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
           +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF+ +G    
Sbjct: 278 KGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFAT 337

Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377
            +G  + V DY H  + +   +K  R
Sbjct: 338 PKGEVMLVDDYGHHPSEVAATIKAAR 363


>gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
 gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
          Length = 486

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 130/319 (40%), Gaps = 22/319 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I+ G  F AI G++ DGH +   A+A GA  IV+S A       A  R  
Sbjct: 26  ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLAMANGAAMIVISEAR----LPAMGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VVD+    L         +    I+AVTG+ GK++    +++    SG        
Sbjct: 82  VPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKTTTKEMLRRTLSPSGKVH----- 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++++SF  +N      P+ LA+ +   +  GV  + +          ++  ++      
Sbjct: 137 -ASVASF--NNHWGV--PLTLAR-MPEDTDFGVFEIGMNHPEEIRPLAKM--VEPHVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RV 267
           T +   H+   ++      AK  +F+ + P     +I   D    E ++RA  A     V
Sbjct: 189 TTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGH--VILNRDNDQFEFLERAALAAGVEHV 246

Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S G   K  + L +  A      + +++ G+  +     PG     NAL   G  + + 
Sbjct: 247 HSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVLGTVMLVD 306

Query: 327 IDSALVLEHLEKLHVVPGR 345
            D    ++ L  L    GR
Sbjct: 307 ADLDKAIDALATLQAEKGR 325


>gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 465

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 164/377 (43%), Gaps = 49/377 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S+DSR IQ G  FVA+ G + DGH FI  A++ GA A + +S    Q     +R  
Sbjct: 26  VKGLSTDSREIQPGMAFVALKGERFDGHDFIGAALSGGAAAAIGTSFPGHQVVG--LRPG 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL-----AVTGTSGKSS-------VASFVQQIC 137
             ++ VD+T   L+L   +L   H + +L      VTG+SGK++       V S V ++ 
Sbjct: 84  QALIQVDDT--LLAL--QKLAAYHRQKVLKGPLIGVTGSSGKTTTKNLIAAVLSPVLKVL 139

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +  G  + +IG   T+   A         P + A A+  ++ +G   ++  A+       
Sbjct: 140 KTPGNFNNEIGLPMTLLRLA---------PWHQA-AVVEMAMRGKGEIASLAAI------ 183

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                +   G  TN+G  H+    +      AK  L    LP E  A++  D+ + + + 
Sbjct: 184 ----ARPTIGVITNIGTTHLGLLGSIANIAAAKGELLAA-LPAEGLAVLNGDNEWCRRL- 237

Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNA 315
             A    CRV+    +G+  I+ + +     +     +V  GK+     P+PG   V +A
Sbjct: 238 --AATCPCRVVFFSTRGQGEIYARDIGDRGLEGTFFTAVFPGKEVRVQLPVPGRHNVEDA 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMIL 373
           L A  +  ++G++   +   L        R +       GG +  + A+ +N  S+E  L
Sbjct: 296 LAALAVGFSLGVEPETMARSLADWPAEDLRQDL--RPGPGGSLVFNDAYNANPESMEAAL 353

Query: 374 KNIRTITSGRIIVVFGC 390
           + +  +  GR + V G 
Sbjct: 354 QALGAL-PGRRVAVLGA 369


>gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 455

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 9/150 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +  L + +  +++N   +FP +  +     V  DSR +Q   +F+A+ G K DGH F+
Sbjct: 1   MSVNRLTFHEICQILNS-PVFPAEI-DSFTPSVVVDSRLLQKNDLFIALPGEKTDGHHFL 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENIL 118
            +   +GA A +VS+     DF    ++N   PIL VD+  + L   A     +    I+
Sbjct: 59  NEVEKKGAAAAIVSN-----DFLRQNKTNFHMPILGVDDVLEALQKLAQEYLKQRQVKIV 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           A+TG+ GK++    + Q+ Q+    +F  G
Sbjct: 114 AITGSVGKTTTKHLLFQLLQKHFSVAFSPG 143


>gi|284048638|ref|YP_003398977.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952859|gb|ADB47662.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 461

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 152/400 (38%), Gaps = 82/400 (20%)

Query: 53  KEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-- 108
           KE   +FI  A  Q   AE +VVS+A         I  + P LV  + R+   +  S   
Sbjct: 50  KEGALVFIGHAACQIERAEVVVVSTA---------IHPDNPELVEAHRRQVPVIHRSDVL 100

Query: 109 --LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
             L  +H    +AV G  GK++ +S +  I    GL      PT                
Sbjct: 101 AWLMNRHKG--IAVAGAHGKTTTSSMLSCITSDCGLD-----PT---------------- 137

Query: 167 PIYLAKALSYLSSQGVTHVS--VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            I +   ++ L S   +  S  V A +   D   L     IA   TN+  DH+D++ +Q+
Sbjct: 138 -IVVGGIVNNLGSNAASGKSDWVVAEADESDGSFLKFNPYIA-VVTNIEDDHLDHYGSQE 195

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
               A  +   ++       + Y +D     V         RV+S G   +        A
Sbjct: 196 NIQKAFAQFVSQIKEDGCAVLCYDND----RVRTIGEATDKRVISYGIDSQ-------DA 244

Query: 285 IHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +  + +    +G  FD ++           +PG   V N+L A      +G++   +L 
Sbjct: 245 DYQAKNIIYGTDGTHFDVVYQGETIGQGHLIIPGRHNVLNSLGAIAAARELGLELPDILT 304

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            LEK      RFE   T  +   I+V  DYAH    ++  LK  R     R+IVVF    
Sbjct: 305 SLEKFSGAKRRFE---TKGKADGIWVVDDYAHHPTEIQATLKAARQTHPERLIVVF---- 357

Query: 393 DRDQGKRPIMGKIALDL-------ADIAIVTDDNPRSEDP 425
              Q  R    ++ LD        AD  IVTD    SEDP
Sbjct: 358 ---QPHRYTRTQLLLDEFAVAFKDADKLIVTDIYAASEDP 394


>gi|239628388|ref|ZP_04671419.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518534|gb|EEQ58400.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 479

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 125/316 (39%), Gaps = 38/316 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A I  + P  +    +    L  + L G+   N    +AV+GT GK++  S +  I  
Sbjct: 95  YTAAIHEDNPEFMAVKEKGIPMLSRAELLGEMMRNYKQAVAVSGTHGKTTTTSMITDI-- 152

Query: 139 RSGLSSFQIGPTSTISSFAQD--NRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLD 195
              L +  + PT ++    QD    +   SP +++ +A  Y +S    H ++E       
Sbjct: 153 ---LLAGNLDPTISVGGILQDIGGNIRVGSPELFVTEACEYTNSFLSFHPTMEV------ 203

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                          N+  DH+D+ +  Q       RLF E LP     +I +     +E
Sbjct: 204 -------------ILNIEEDHLDFFKDIQD-IRHSFRLFAEKLPSRGLLVINSGIDAVEE 249

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFL-FPLPGEFQV 312
           + K     GCRV++ G      +  K        +    + ++G+  + +   + GE  V
Sbjct: 250 ITK---GLGCRVVTFGKDSSSTYTAKDITYDGFARPSYDLVIQGEVVNRITLGVTGEHNV 306

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN+L A  + + +G     V+  L K      RFE  G    G  I  DYAH    ++  
Sbjct: 307 YNSLAAIAVAMELGAGFDAVMAGLRKFTGTDRRFEKKGEIG-GITIIDDYAHHPQEIKAT 365

Query: 373 LKNIRTITSGRIIVVF 388
           L   +     ++  VF
Sbjct: 366 LSAAKNYPHRKLWCVF 381


>gi|118444708|ref|YP_877107.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium novyi NT]
 gi|166222976|sp|A0PXK5|MURC_CLONN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118135164|gb|ABK62208.1| UDP-N-acetylmuramate--alanine ligase [Clostridium novyi NT]
          Length = 458

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 51/341 (14%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPE 115
           A+GAE  +  +  +L+D     ++A I  + P LV        ++  +   G     H  
Sbjct: 53  AKGAEIYIGHNGNNLKDVDLVVYTAAIPDSNPELVKARECNIQTMDRAEFLGHVMQGHKY 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAK 172
           NI A++GT GK++  S    I   + L      PT  +         N     S  ++ +
Sbjct: 113 NI-AISGTHGKTTTTSMFSHISLSANLD-----PTILVGGNLDVINGNVRVGNSEYFVTE 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y +S              L  +   G+ L      N+  DH+D+++      N  ++
Sbjct: 167 ACEYKASF-------------LKFYPYIGVIL------NIEADHLDFYKDINDIQNTFLK 207

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F +L+P +   I+ ADD    EV K+     C V++ G     +  K +  + N  + T
Sbjct: 208 -FAKLIPNDGFLIVNADDKRCVEVSKQVD---CNVITFGINNGDVRAKNI--VFNNGRPT 261

Query: 293 ISV---EGKDFDFLFPLPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             V   E K F     +PG   + +AL  +++ L + + +DS  ++E L   +    RFE
Sbjct: 262 FDVYRNEEKLFTLTLNVPGNHNILDALASISSALSLNVPVDS--IIEGLSTFNGAHRRFE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             G    G  +  DYAH    ++  L   +     R+  VF
Sbjct: 320 IKGK-VDGITVVDDYAHHPTEIKAALNAAKNFPHKRVFCVF 359


>gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
 gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
          Length = 461

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 136/324 (41%), Gaps = 56/324 (17%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  VS++SR ++ G +FV IVG K D H FIP A+  GA A      ++ Q+     + 
Sbjct: 25  EVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMALDTGAAA-----CFTQQEPEEGFKY 79

Query: 89  -NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRS 140
            +  ++ V +T+K L  FA+    +    ++ VTG+ GKSS    +       +++ + +
Sbjct: 80  LDGAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKSSTKEMIAAALSQGKRVHKTA 139

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  + QIG   T+  F  D+                  +  +  + +  S+ G +  RL 
Sbjct: 140 GNYNSQIGLPLTV--FGLDH------------------THEIAVIEMGMSNFG-EMERLS 178

Query: 201 GI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAY 252
            I    +   TN+G  HI+  +TQ+     K+ + + +       L  + P +    ++Y
Sbjct: 179 AIASPTSAVVTNIGISHIEQLKTQENIRAEKLHIADTIGEQGALYLNGDDPMLQQLRESY 238

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           + +++     + C      Y+   I   K C      +  +         + P  G   V
Sbjct: 239 TGKIVWYGMESDCD-----YRAVNIDTVKDCT-----RFELHAPFGAHKIMIPALGLHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHL 336
            NAL A    IA+  D  L L+ +
Sbjct: 289 SNALAA----IAVAYDQGLTLDDI 308


>gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
 gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
          Length = 489

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 188/479 (39%), Gaps = 78/479 (16%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SDSR ++ G +FVAI G + DGH ++     QGA A +V              +  P +V
Sbjct: 36  SDSRQVENGSVFVAIQGERVDGHDYVASVADQGAVAAIVDHEVP--------GAAVPQIV 87

Query: 95  VDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           VDNT   L     +  A R     P  I+ +TG+ GK++     + +          +GP
Sbjct: 88  VDNTVTALGDLAKANIARRRASGEPFTIIGITGSVGKTTTKDLTKALLS-------TLGP 140

Query: 150 T-STISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           T + + SF  +N +  P + + + +   Y ++  G  HV             +  +  IA
Sbjct: 141 TVAPVGSF--NNEIGLPLTALTVGEHTRYFVAEMGANHVG-----------EIAHLTTIA 187

Query: 207 ----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                    +G  H+    + +    AK  +   LLP    A++  DD + + +   A  
Sbjct: 188 PPDIAVVLKVGVAHLGEFGSVERIAQAKTEIVRGLLPN-GIAMLNTDDEHVEAMSAVAPG 246

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----------ISVEGKDFDFLFPLPGEFQV 312
               VL  G            A+H    VT          ++ +G+       +PG   V
Sbjct: 247 ---EVLRFGIDESNAGRD---ALHACDIVTDSFDRASFTMVAGDGEQSQVALAIPGAHNV 300

Query: 313 YNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSN 367
            NAL AA +   +G+   D A VL   E+ H+ P R   V T  RGG  +  +D +  +N
Sbjct: 301 MNALAAAMVAHRLGMPLEDIARVLG--EQRHISPHRMA-VSTVERGGARFTLIDDSFNAN 357

Query: 368 --SLEMILKNIRTITSG---RIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             S+   L  +   + G   R+ V   +   GGD  Q  R I G  A +     +V   +
Sbjct: 358 PDSMHAGLDGLARWSEGAQYRVAVLGAMLELGGDEKQLHRSI-GAYAAEHGIDEVVAVGS 416

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           P  +  + +  E+  G     +  +   A+  A       D++V   + HE   ++  G
Sbjct: 417 PTDQALDALAGELAQG----AKNADGAMAVEWAHSAAQADDMIVRIAREHEGTVVLLKG 471


>gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
 gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
          Length = 454

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 21/146 (14%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQD++     ELI Q         +  I+ VSSD+R +  G +F+A+VG + D H F+  
Sbjct: 9   LQDVLN---AELIGQ---------DVTIDAVSSDTRTLGKGALFIALVGERFDAHDFVET 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A++VS    +         + P LVV +T+  L    + +  +     +A+TG
Sbjct: 57  AKQNGASALLVSKVVDI---------DLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIG 148
           + GK++V   +  I  + G + +  G
Sbjct: 108 SCGKTTVKEMLAAILSQKGQTLYTAG 133


>gi|283850513|ref|ZP_06367801.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
 gi|283574084|gb|EFC22056.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
          Length = 470

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 141/349 (40%), Gaps = 49/349 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S +  I   +GL  +  IG    ++++    RL              
Sbjct: 121 IAVAGTHGKTTTTSLLATIFTEAGLDPTVIIG--GRLNAYGAGARL-------------- 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG   ++    S G        +  IA   TN+  DH+D++   +A  +A +  F  
Sbjct: 165 --GQGEYLIAEADESDG----SFLCLAPIASVVTNVDADHLDHYAGIEAIDDAFVE-FLN 217

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++  DD     ++ R +      ++ G+  K     ++     K +  +S++
Sbjct: 218 GIPFYGVNVVCLDDPGVARLLPRINRP---FVTYGFGEKARLRGRILETGAKSRFLVSLD 274

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+D  +     PG   V NAL A G+ +  GI  A++ E L K   V  RFE  G   R 
Sbjct: 275 GEDLGEMRLNHPGRHNVQNALGAIGVSLETGIAPAVIAEALAKFGGVGRRFEIKG--ERA 332

Query: 356 GRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADI 412
           G + V DY H    +   L   R +   R +VV      R    + + G      + AD 
Sbjct: 333 GVVVVDDYGHHPAEIRATLATARAVYPDRRLVV-AFQPHRFSRTKALFGDFCTCFEAADT 391

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            ++T+  P SE P       I G+ G        E++   I  ++K DV
Sbjct: 392 LLLTEIYPASEAP-------IPGVSG--------ESLARGIRQVSKTDV 425


>gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
 gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
          Length = 462

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 176/409 (43%), Gaps = 45/409 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+DSR I  G +FV + G   DGH FI +A  +GA AI+       +  +  I++
Sbjct: 25  QITGVSTDSRTINKGELFVPLTGPNFDGHDFIERAFEKGAAAILCDKNKRSKVDNLPIKN 84

Query: 89  NTPILVVDNTRKF---LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              I+ VDN +     LS +  RL+   P   +A+TG+ GK++      +I        F
Sbjct: 85  ---IIFVDNPQSALLSLSAYYRRLF-DIP--FVAITGSVGKTTTKEMTAEILNM----RF 134

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++  TS       +N +  P  I+  +         V  V +  S+ G        ++  
Sbjct: 135 KVLKTSG----NLNNEIGLPLTIFRLE-----EGYQVGVVELGMSALGEISRMASVVRPK 185

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  HI+   ++Q    AKM + E  L +   A++  D    +E+         
Sbjct: 186 IAVITNIGIAHIEKLGSKQNIARAKMEILEP-LGENDLAVLNGD---CQELWDARKTIVP 241

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCI 323
           + +  G +   I  + + + ++  ++   + G   +  F   LPG   V NAL A    I
Sbjct: 242 KTVFFGQERGDIKARNIKS-NSTNELEFDIYGCYGEMTFKALLPGIHNVNNALAA----I 296

Query: 324 AIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377
           A+G +  L  E +++    L +   R +F    S  G   +D A+ +N  S++  L  ++
Sbjct: 297 AVGFEMGLTKEEIQQGFLNLKLPEMRLQF--KKSYFGADIIDDAYNANPDSMKSALDFLQ 354

Query: 378 TITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             + G+   V+ G     GD  +     +GK A + ADI I   +  +S
Sbjct: 355 QYSYGKKRAVILGDMLELGDLSEKAHFEIGKYAAERADIFIAVGNYAQS 403


>gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK160]
          Length = 456

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 156/388 (40%), Gaps = 74/388 (19%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78
           Q+    +     DSR I+ G +FV + G + DGH FI  A  QGA A      V   AY 
Sbjct: 20  QFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATLSERPVAEGAY- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137
                         ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 78  --------------ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                 +  G  + +IG   T+    +D                 +   G  H+      
Sbjct: 124 TTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD 
Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLR-KDGLLIVPAD- 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FP 305
               +++     A C+++  G     I L ++     +++ ++S    D +FL      P
Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSF---DCNFLEQKIDLP 268

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + G++   NA++AA   +  G+  A + +   +L +   R E+    + G  I  D Y  
Sbjct: 269 VTGKYNATNAMIAAYAALQEGVSDADIAQAFSELELTRNRTEWKKAGN-GADILSDVYNA 327

Query: 365 TSNSLEMILKNIRTITS---GRIIVVFG 389
              ++ +IL+   TI +   GR + V  
Sbjct: 328 NPTAMRLILETFSTIPANPGGRKLAVLA 355


>gi|294497550|ref|YP_003561250.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
 gi|294347487|gb|ADE67816.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
          Length = 469

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H+   +T + Y  AK  + E L P     I+ ADD   K V+  +H  G   +  
Sbjct: 187 NIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADDENIKRVLDVSHLQGVVYIGK 246

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G   +F   K +         T+  + K++D   P  GE  VYNAL A      +G+D +
Sbjct: 247 GDDSQF-QAKDIKYAKGGMAFTLKYQNKEYDAFIPGYGEHNVYNALAAIAAVFYVGVDIS 305

Query: 331 LVLEHLEKLHVVPGRFEF 348
           + ++ L     V    EF
Sbjct: 306 VAIQRLSLFEQVEEHLEF 323


>gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
 gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
          Length = 478

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 139/326 (42%), Gaps = 39/326 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVAI G++ D H F+ +  A+   A +V+      D SA      P+
Sbjct: 34  VSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVAARNVSAALVARVPDGWDVSA-----VPL 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +TR  L   A     K    ++AVTG++GK++V   +  I   +  ++ ++   +T
Sbjct: 89  VRVADTRAGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGANERL---AT 145

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + +F  +N +  P  ++   A   L+    G+ H      +  L +     + L+     
Sbjct: 146 VGNF--NNDIGLPLTLFRLNAAHRLAVVELGMNH---PGETSLLAKIAEPTVALV----N 196

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKRAH 261
           N  R+H ++  T +A       +   L P E  A+  A+DAY+           ++  A 
Sbjct: 197 NAQREHQEFMATVEAVALEHASVIHALNP-EGVAVFPANDAYASIWRVAATGNRIVDFAL 255

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N   R  +    G+F          + ++++I      F+    + G+   +NAL A   
Sbjct: 256 NTAERTTAAAVTGRF----------DGKRLSIETPEGAFEVTLQVLGDHNAHNALAATSA 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE 347
            +A G+    +   LE    V GR +
Sbjct: 306 ALASGVSLDAIRRGLESFGAVKGRLQ 331


>gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 469

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 154/383 (40%), Gaps = 64/383 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R    V  DSR +  G +FVA  G + DGH +   AI+ GA A++ +             
Sbjct: 25  RVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGAISAGAVAVLGTREV---------- 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           S  P+++V +    +   A  +  + P   ++ +TG+SGK++    + Q+  R       
Sbjct: 75  SGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSGKTTTKDLIAQLAVR------- 127

Query: 147 IGPT-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLD 200
           +GPT +   SF  +N L  P + +       YL     ++GV HV          ++  D
Sbjct: 128 LGPTVAPPGSF--NNELGHPYTALQATPETRYLVMEKGARGVGHV----------RYLCD 175

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +        N+G  H+    + +    AK  L E  LP +  A++ ADD     +  R 
Sbjct: 176 VVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEA-LPSDGLAVLNADDPRVDAMASRT 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFP---------LPG 308
                RV+  G   +           + + V ++++G+    +  + P         L G
Sbjct: 235 R---ARVVRYGESER----------ADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTG 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
             QV N+L AA +   +G+    +   L +L +V  R   V     G  +  D Y     
Sbjct: 282 RHQVSNSLAAAAVGRELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVIDDSYNANPA 341

Query: 368 SLEMILKNIRTITS-GRIIVVFG 389
           S  + L+ + ++   GR + V G
Sbjct: 342 STGVALRALASMRGEGRTVAVLG 364


>gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
 gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
          Length = 469

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 165/396 (41%), Gaps = 36/396 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R I +G +FVA+ G K DG  F  +A+ +GA A++V +  S     A  ++   +
Sbjct: 31  ITTDTRKISSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALKKAKGTV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L  D+  +     A     K    ++A+TG++GK++       +    G           
Sbjct: 91  LKADDGLRAYQAIAHAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRG----------K 140

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----GS 208
           +   A++       P+ L   L  +         VE    GL Q  +  +  +A    G 
Sbjct: 141 VCRTAENYNNEVGLPLTL---LGIVPEDFA--AVVEIGMRGLGQ--IAALAPVAAPTIGI 193

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267
            TN+   H++   + +    AK  L E  +P     I+ ADD  S+    R+  A G R+
Sbjct: 194 VTNVCEVHMELLGSIENIAKAKAELVEA-IPSGGTVILNADD--SRVAAMRSFAADGVRI 250

Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L+        +  + +    +  +  ++   +  ++   LPG   V N L A     A+G
Sbjct: 251 LTYAIDADADVRAEALQCAADGSRFMVTYANERHEYAVSLPGRHNVSNTLAALAAGFALG 310

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRI 384
           +    +   L  +     R+E   T S G  ++++  Y  + +S+   L+    +  GR 
Sbjct: 311 LTPQEMQAGLRNIEGTKMRYE---TESVGAWMFINDAYNASPSSMHAALETTAALYPGRK 367

Query: 385 IVVFG----CGGDRDQGKRPIMGKIALDLADIAIVT 416
           I V G     G   ++  R ++G+ A +L   A+VT
Sbjct: 368 IAVLGDMLELGAAAEEAHR-MIGRRAAELGFAAVVT 402


>gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
 gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
          Length = 456

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  I  V +D+R+I  G +F+ IVG + +GH F+ QAI +GA+A + S+        A 
Sbjct: 23  EDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRGAKAALWSTK------EAD 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
              + P++ V++T + L   A          ++AVTG++GK++    +  +C+
Sbjct: 77  APEDLPLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTKDMMAAVCE 129


>gi|117922174|ref|YP_871366.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
 gi|166224731|sp|A0L1P1|MURC_SHESA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117614506|gb|ABK49960.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
          Length = 488

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 54/326 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ +VVS+A + ++          I +V        L   R +G      +A+ GT G
Sbjct: 78  QQADVVVVSTAINPENPEIIAAKELRIPIVRRAEMLAELMRYR-HG------VAIAGTHG 130

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S +  +  ++G   +F IG    ++S   + RL T S   +A+A     S+L  Q
Sbjct: 131 KTTTTSLIASLYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADESDASFLHLQ 187

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D +        +    F   LP 
Sbjct: 188 PMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295
              A++  DDA  +E+M R    G  +++ G+         V A++  QQ      T+  
Sbjct: 225 YGVAVVCIDDAVVREIMPRI---GRHMITYGFSDD----ADVQALNFHQQGHQCRFTVRR 277

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
           +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF+ +G    
Sbjct: 278 KGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFAT 337

Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377
            +G  + V DY H  + +   +K  R
Sbjct: 338 PKGEVMLVDDYGHHPSEVAATIKAAR 363


>gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
          Length = 473

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 29/242 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++AG +FVA+ G + DGH ++ QA   GA  +VV    +          N P 
Sbjct: 43  VVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFCLVVEHVET--------GLNVPQ 94

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTS 151
           LVV+N+R+   L A     +    + AV G++GK++    ++ I     G+ +      +
Sbjct: 95  LVVENSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMKAILAAHWGVQNIH----A 150

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS-SHGLDQHRL-DGIKLIAGSF 209
           T  +F  +N +  P  +            G     VEA  +H  +  RL D I+      
Sbjct: 151 TEGNF--NNDVGVPHTLLGLHC-------GCRAAVVEAGMNHRGEMARLADWIRPTVVLM 201

Query: 210 TNLGRDHIDYHQT--QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           TN  R+H  Y +T  + A+ N    L    LP +  A+  ADD  +      A   G R 
Sbjct: 202 TNAQREHQAYLETVAEAAFENG---LLIAALPNDGVAVYPADDPCADVWASYALARGVRT 258

Query: 268 LS 269
           L+
Sbjct: 259 LT 260


>gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
 gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
          Length = 454

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 157/376 (41%), Gaps = 50/376 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  + ++  DSR I+ G +F+ + G + DGH FI  A   GA A           FS
Sbjct: 20  EFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               +  P + VD+  +     AS    K   +++AVTG++GK++    +  +       
Sbjct: 69  EREVAGHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------ 122

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
           S +     T  ++  +N +  P   Y A  +   + + V  +      H  D H L  + 
Sbjct: 123 STEYKTYKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELA 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257
           K   G  T +G  H+++  +++     K+++ + +   +S  I+ A      D Y  E  
Sbjct: 175 KPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGM---DSDGILIAPADTIVDPYLPE-- 229

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                    V+  G  G  I +K +    +K+ +T      D     P+PG++   NA+V
Sbjct: 230 ------SQMVIRFG-DGAEIFVKDLQ--ESKESLTFMTNVIDRPITLPVPGKYNATNAMV 280

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA +   + I    ++E LE + +   R E+    + G  I  D Y     ++ +IL+  
Sbjct: 281 AAYVGKLLAISDDDIVEALETIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETF 339

Query: 377 RTITS---GRIIVVFG 389
             I +   G+ I V  
Sbjct: 340 SKIPANEGGKKIAVLA 355


>gi|254468675|ref|ZP_05082081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
 gi|207087485|gb|EDZ64768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
          Length = 451

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 126/329 (38%), Gaps = 51/329 (15%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR  +   IF+A+ G+K DG  FI   + Q     + +            + N  
Sbjct: 28  DVNTDSRTFKDNEIFLALEGDKFDGSNFIDDVLKQKPLFFITNKEQ---------KYNAR 78

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
             VV++ +KFL   +  +  K     +A+TG++GK++    +    +             
Sbjct: 79  YAVVESGKKFLIELSKLILKKLSLTKVAITGSNGKTTTKDLIVHFLK------------- 125

Query: 152 TISSFAQDNRLTTPSPIY--LAKALSYLSSQGVTHVSVE--ASSH-GLDQHRLDGIKLIA 206
             + F  D  L T       +   LS L SQGV   +V    ++H G   H  D I+   
Sbjct: 126 --NKFNDDAVLFTKGNYNNEIGLPLSILQSQGVEKFAVFEIGTNHPGEIIHLADIIRPNI 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY--------SKEVMK 258
              TN+G  HI    +++     K ++F   L      I+  DD Y         K    
Sbjct: 184 SIITNIGDAHIGNFGSKEKIAEEKKQIF-NFLKTNELKILNKDDEYFQILNQSPGKTFCI 242

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             +N    VLS     K   L  +   H  Q + I          F L G+  + N  +A
Sbjct: 243 SNNNDDSDVLSF----KSCELNMIELTHKFQSIKIK---------FQLTGQHNLQNFAIA 289

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               I IGID   + ++   L    GRF+
Sbjct: 290 CAALINIGIDFQELEKYFGNLESTNGRFK 318


>gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11H7]
          Length = 457

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 142/338 (42%), Gaps = 57/338 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR      +F+AI G   DGH F+P+ + +G +++V+            +  N P 
Sbjct: 31  ISIDSRTCFENDLFIAIKGKNFDGHSFLPEVLNKGVKSVVIKKG-----MQKLLPDNFPC 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145
            VV++T +        +  K    ++A+TG+ GK++    V ++ ++ G      S+F  
Sbjct: 86  WVVNDTLEAFQKLTLLIRKKLSIPVVAITGSVGKTTTKEMVGEVLKKLGKIKLSHSNFNN 145

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   TI +  +++++              +  +G+  +        L +H    I +I
Sbjct: 146 EIGVGLTILAADKEDKVLVLE----------MGMRGLGQI------ENLSKHSEPDIAVI 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  HI   ++++    AK  + + L PK    II A+D   +E + R +  G 
Sbjct: 190 ----TNIGTAHIGLLRSKKNITYAKCEISKFLNPK-GVVIIPANDLLLEETL-REYWKG- 242

Query: 266 RVLSV------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           RV+ V        +G F     +   ++    TI +E   F   F   G     N L A 
Sbjct: 243 RVIKVELLNIKDQKGSFKKNDNLRGFYDPLNETILIEENTFKISF--EGFHNASNFLFAY 300

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +   +GID     E   K       F+FV   S GGR
Sbjct: 301 AVAKELGID----FESFNK-------FDFV---SLGGR 324


>gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
 gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
          Length = 451

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 132/324 (40%), Gaps = 44/324 (13%)

Query: 13  ELINQLSIFPMQWRERKINEVSS----DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +LI  L   P    E  + +VSS    D+R I+ G +F+A  G K DGH F+  AIA GA
Sbjct: 9   QLIEVLLARPFNISEAALAQVSSGIQTDTRIIKPGEVFLAFRGEKFDGHEFVQTAIANGA 68

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +V   Y    F        P+L V NT +           +    ++ VTG+ GK++
Sbjct: 69  IAAIVDDDYENPGF--------PVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +    G          T  +F  +N +  P      K L  L+++   +  +E
Sbjct: 121 TKELIAAVLGTKG------NIHKTYGNF--NNEIGVP------KTLLELNAEH-DYAVIE 165

Query: 189 ASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +  G  Q  +  +  IA    G  TN+G  HI+   +++A   AK  L  E +PK+S A
Sbjct: 166 MAMRGRGQ--IAELTQIANPTIGVITNVGTAHIELLGSEEAIAEAKCELLAE-MPKDSVA 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  D+        +  +    VL+ G  G  I    V          + V G       
Sbjct: 223 ILNHDNPLLMATAGKFWSG--EVLTYGLSGGDIQGSLV------DNAIVEVAG--LRLPL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGID 328
           PLPG     N L A  +   +GI+
Sbjct: 273 PLPGRHNATNYLAALAVAKVLGIE 296


>gi|33598261|ref|NP_885904.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella parapertussis
           12822]
 gi|33603172|ref|NP_890732.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella bronchiseptica
           RB50]
 gi|44888184|sp|Q7W4B5|MURC_BORPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|44888186|sp|Q7WFS3|MURC_BORBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33566819|emb|CAE39034.1| UDP-N-acetylmuramate--alanine ligase [Bordetella parapertussis]
 gi|33568803|emb|CAE34561.1| UDP-N-acetylmuramate--alanine ligase [Bordetella bronchiseptica
           RB50]
          Length = 468

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 46/266 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S V  +    GL  +F IG    ++S   + RL              
Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARL-------------- 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG  ++ VEA     D   L+ + ++A   TN+  DH+D +    A   +    F +
Sbjct: 152 --GQG-EYIVVEADES--DASFLNLLPVMA-IVTNIDADHMDTYGHDVARLKSAFIEFTQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTI 293
            LP    AI+ ADDA  +E+M         + + G         +VCA     +  ++  
Sbjct: 206 RLPFYGSAILCADDANVREIMPFVSRP---ITTYGLSPD----AQVCAQDVQADGTRMRF 258

Query: 294 SVEGKDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +V+ +D D + P       LPG   V NAL A  +   +G+D A + E L     V  RF
Sbjct: 259 TVQRRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRF 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMI 372
                 ++ G + V  AH   +  ++
Sbjct: 319 ------TQWGDLPVPAAHGGGTFTLV 338


>gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK408]
          Length = 456

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 156/383 (40%), Gaps = 64/383 (16%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    +     DSR I+ G +FV + G + DGH FI  A  QGA A +          S
Sbjct: 20  QFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATL----------S 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
               +    ++VD+        A     K   ++LAVTG++GK++    + Q+       
Sbjct: 69  ERPVAEGAYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKT 128

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   T+    +D                 +   G  H+         D 
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167

Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD     +
Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLR-KDGLLIVPAD-----K 221

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEF 310
           ++     A C+++  G     I L ++     +++ ++S    D +FL      P+ G++
Sbjct: 222 IVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSF---DCNFLEQKIDLPVTGKY 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA++AA   +  G+  A + +   +L +   R E+    + G  I  D Y     ++
Sbjct: 274 NATNAMIAAYAALQEGVSEADIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAM 332

Query: 370 EMILKNIRTITS---GRIIVVFG 389
            +IL+   TI +   GR + V  
Sbjct: 333 RLILETFSTIPANPGGRKLAVLA 355


>gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 443

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 157/373 (42%), Gaps = 60/373 (16%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+  V+ +SR ++ G +FVA+V +  DGH ++  A+ +GA A++V   ++       I  
Sbjct: 23  KVTGVAFNSRDVKIGDLFVALVAD-SDGHRYLQDALDRGAAAVLVDDNHA-------ISE 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P ++V +T   L   AS    +    ++A+TG++GK++       I   +   +F+  
Sbjct: 75  KLPAIIVKDTLTALQQLASYYRQQINPKVIAITGSNGKTTTKDMTAAIVS-TVFKTFK-- 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKL 204
              T ++F  +N +  P  +     LS      V  V +     G    L Q     I +
Sbjct: 132 ---TPNNF--NNEIGVPMTL-----LSMPEDTEVLVVELGMDRSGQLTMLSQLVQPDIAI 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVM 257
           I    T +G  HI++ +T+     AK+ +   L       +P + P +  A       +M
Sbjct: 182 I----TMIGEAHIEFFKTRANIAKAKLEITNGLKADGVLFIPFDEPLLTQA------VIM 231

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +R          V + G+ I   +  + H       +   K+  F  PL G + + NAL 
Sbjct: 232 QR----------VVWFGQNIDAVETASDHT------NFIYKNTRFAIPLIGGYNIMNALA 275

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A    I + ID    ++ L+   +   R E + T +RG  +  D Y     ++  +L  +
Sbjct: 276 AISAGILLHIDLKKAVQALQTFDLTKNRTERLVT-ARGVILISDVYNSNPTAVAAVLATL 334

Query: 377 RTITSGRIIVVFG 389
           + I +    VV G
Sbjct: 335 KAIPAQHKYVVLG 347


>gi|70726733|ref|YP_253647.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus haemolyticus JCSC1435]
 gi|81174951|sp|Q4L5N4|MURD_STAHJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68447457|dbj|BAE05041.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           haemolyticus JCSC1435]
          Length = 449

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 129/282 (45%), Gaps = 43/282 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+A+TGT+GK++ +S +  + ++S L+    G    ++S  AQ+   T+P+  YL   LS
Sbjct: 113 IIAITGTNGKTTTSSLIGDMFKKSRLTGRLSGNIGYVASKVAQE---TSPNE-YLITELS 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                GV            +Q+R   I +I    TN+   H+DYH+T + Y NAK ++++
Sbjct: 169 SFQLLGV------------EQYR-PHIAII----TNIYSAHLDYHETLENYQNAKKQIYK 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTI 293
                +     Y    Y +  +  + N   + L    Q +   I++K    ++   ++  
Sbjct: 212 NQTEND-----YLICNYHQRHLIESENLKAKTLYFSTQQEVDGIYIKDGFIVYQGIRII- 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + D L  LPGE  + N L A    I  G+    +++ L     +  R +++GTN 
Sbjct: 266 -----NIDDLV-LPGEHNLENILAAVLASILAGVPIKAIIDSLTTFSGIDHRLQYIGTN- 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           R  + Y D +  +N+L         + S +  +V+ CGG DR
Sbjct: 319 RTNKYYND-SKATNTLATQF----ALNSFKQPIVWLCGGLDR 355


>gi|329730007|gb|EGG66398.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU144]
          Length = 449

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 145/343 (42%), Gaps = 54/343 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115
           + G E I  S  +SL D    I  N  I     ++ +   + L +      S L  + P 
Sbjct: 54  SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEAANRGLKILTEVELSYLISEAP- 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174
            I+AVTGT+GK++V S +  I Q+S L+    G    ++S  AQ+ +    S  YL   L
Sbjct: 113 -IIAVTGTNGKTTVTSLIGDIFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+     E   H         I +I    TN+   H+DYH+T + Y NAK +++
Sbjct: 168 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292
           +     +     Y    Y +  +  + N   +      Q +   I++K    + N  ++ 
Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  KD      LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 265 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
            R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 319 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355


>gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
 gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
          Length = 824

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 153/356 (42%), Gaps = 33/356 (9%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           R+  +  + +DSR +      +F A+   + DGH +I +   +G    VVS      D  
Sbjct: 20  RDCNVGFILTDSRSLCFPEETLFFALKSERNDGHNYIAELYRRGVRNFVVS------DVP 73

Query: 84  ATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
               S+ P    L V NT + L   A R   +    I+ +TG++GK+ V  ++ Q     
Sbjct: 74  NNFASDYPDANFLRVVNTLEALQRLAERHRDEFNIPIVGITGSNGKTIVKEWLYQ----- 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            L S  +  T +  S+  ++++  P  ++L   L+  +  G+    +      L     D
Sbjct: 129 -LLSDDMYVTRSPRSY--NSQIGVPLSVWL---LNKQTEIGIFEAGISEPGEMLALR--D 180

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKR 259
            I+      TNLG  H +  ++++A    K+ LF      ++  I+Y  DD    + ++ 
Sbjct: 181 IIQPTIAVLTNLGSAHQENFKSKEAKCREKLILFH-----DAKTIVYNMDDEIINDTVES 235

Query: 260 AHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            + +G ++  S       + +K V    N   +  + + K+  ++ P   E  + N+++ 
Sbjct: 236 YNYSGEKITWSFKNPKATMFIKSVEKRKNDTVINYNFKDKEGKYILPFIDEASISNSIIC 295

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           A + + +G+ + ++   + KL  V  R E V     G  +  D Y    NSL++ L
Sbjct: 296 AIVTLCLGVSTDVLSRRMAKLEPVAMRLE-VKVGQHGCTLINDSYNSDVNSLDIAL 350


>gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
 gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
          Length = 453

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 133/327 (40%), Gaps = 42/327 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +V +D+R + AG +FVA+VG + D H F+  AIA GA+A++VS           +   
Sbjct: 24  VGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDAIASGAQALLVSK---------HLPVA 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +TR       + +  +    ++A+TG+SGK+SV      I +  G + +  G 
Sbjct: 75  VPQVVVADTRIAFGQLGAWVRQQAKARVVALTGSSGKTSVKEMTAAILRECGETLYTAGN 134

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                    +N    P + + L K   Y        + + A+  G   +  D  +     
Sbjct: 135 L--------NNDFGVPMTLLRLTKDHDY------AVIELGANHQGEIAYTTDLTRPETAL 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             NL   H++   +      AK  +F   LP    AII AD   S ++         + L
Sbjct: 181 VNNLAAAHLEGFGSLAGVAKAKGEIFAG-LPAHGTAIINAD---SNDLANWQPQLVGKTL 236

Query: 269 ---------SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                     V +    I L+      +    T+     D     PLPG   + NAL AA
Sbjct: 237 WRFSPQPQAEVEFGASDIQLRA-----DATSFTLHTPRGDIAITLPLPGRHNIANALAAA 291

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346
            L +++    + +   L KL  VPGR 
Sbjct: 292 ALALSVDAPLSAIQAGLTKLQPVPGRL 318


>gi|222530360|ref|YP_002574242.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254763736|sp|B9MND8|MURC_ANATD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222457207|gb|ACM61469.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 455

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 164/402 (40%), Gaps = 56/402 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W E    + S+ ++ ++   I V I      GH    ++   G E ++ ++A S +D   
Sbjct: 27  WVEGSDMQESATTKMLRENGINVYI------GH---DESHIHGDETVIYTAAIS-KDNPE 76

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + +    L +    +FL L       K  +N++ ++GT GK++  S +  I +++  + 
Sbjct: 77  LLAAKRMNLKIYERAEFLGLLM-----KDFKNVITISGTHGKTTTTSMIGYILKKANYN- 130

Query: 145 FQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               PT  + +F +    N +       + +A  Y+ S    + ++              
Sbjct: 131 ----PTVLVGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLKFNPTI-------------- 172

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                G   N+  DH+DY +   +  N+  + F + +P     ++  DD   K+++ +  
Sbjct: 173 -----GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVVNYDDKNVKDIINQL- 225

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALV 317
           N     +S   +         C+          V+  + + L      +PG   VYNAL 
Sbjct: 226 NTQIICISTKEKTDIFADNISCS---DGYYEFDVKNNNDEILAHIKLNIPGFHNVYNALA 282

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   +G++S  + + L +      R E VG    G  +Y DYAH    ++  L  ++
Sbjct: 283 AFAVASKLGVESITIEQALSEFRGASRRLEKVG-EFNGIYLYDDYAHHPTEIKATLATLK 341

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            I+ G+++ +F          + ++ + A  L LAD  IVTD
Sbjct: 342 KISEGKVLAIF--QPHTFSRLKTLLNEFAESLQLADKVIVTD 381


>gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
 gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
          Length = 448

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 149/342 (43%), Gaps = 51/342 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  DSR +Q G +F AI     +G+ +I   + +GA A+VV+  Y   D       
Sbjct: 42  EIGHVVMDSRKVQKGDLFFAI----NNGNNYIEDVLNKGA-ALVVADNYKGND------- 89

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ++ V+NT + +   A +        I+A+TG++GK++    +  +  +  +++  +G
Sbjct: 90  -KRVIKVENTVESMQKLAQKYREALDIKIIAITGSNGKTTTKDMMYSVLSQKYVTAKTMG 148

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
                     +N +  P  I     L   S   V  + +  S  G     +D +  IA  
Sbjct: 149 NL--------NNHIGVPFTI-----LQLDSKYEVAVLELGMSGFG----EIDLLSNIAKP 191

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  H+++ +T++  F AK  L  + + KE+  II+ DD + K +       G
Sbjct: 192 DIGVITNIGDSHLEFLKTRENVFKAKTELI-KYITKEN-LIIFGDDPFLKIL------DG 243

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +   VGY     +  K     +K    +S E  +  +   L G+    NA +A  +   
Sbjct: 244 IK---VGYGDNNNYQIKNFMDSDK---GLSFELDENKYEVALNGKHNCLNAAMAVVIGKK 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           +GI    +   L+ L + P RF+ +    +   +Y++ A+ +
Sbjct: 298 MGIPYEEIKAGLKNLELTPMRFQKI---EKENIVYINDAYNA 336


>gi|282857255|ref|ZP_06266495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
 gi|282584905|gb|EFB90233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
          Length = 451

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 129/324 (39%), Gaps = 27/324 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR  Q G  FVA+ G K DGH FIP  +A+G   IV  +A   +++S+       I
Sbjct: 20  VRVDSRETQKGEGFVALRGTKVDGHRFIPDVLAKGGALIVCEAAAYREEWSSLYPQCAFI 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L  +     L+  AS +Y K  E +   +A+TG+ GK+S  +  + + +      F+I  
Sbjct: 80  LTPERCEYGLASLAS-VYLKSLERLRETVAITGSVGKTSAKNDTKALLE----GYFKIHA 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +        N L   +   LA      +   V  + + A+  G        +     + 
Sbjct: 135 AA-----GNYNTLIGCAVTVLAAP----ADTEVVLLEMGANHRGEIAEMTRYLPPTIAAV 185

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           T +   H++   + +    AK  +F         A+I  D+     + KRA       V+
Sbjct: 186 TEVAPAHLENFGSLEGVLQAKTEIFAS--ENLRCAVINGDNGM---LCKRAEELRLPEVI 240

Query: 269 SVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             G +G+ +    HL         + +   ++G  F+   PL G  Q+Y    A  +   
Sbjct: 241 RFGRRGEVLFAREHLSWEKDHFTVRAILTGLDGLSFNLSLPLAGVHQLYPLCCAVAIAGR 300

Query: 325 IGIDSALVLEHLEKLHVVPGRFEF 348
           +G+ S  +   L K     GR E 
Sbjct: 301 LGLSSREIAASLPKCRNSAGRGEI 324


>gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis CO72]
          Length = 494

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 29/254 (11%)

Query: 24  QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           QW      E+      +D+R IQAG +F+AI G + D H FI  A  QGA A +V     
Sbjct: 21  QWHHSDKAEIYAHRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137
                  +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I 
Sbjct: 78  ------VVDCDMPQLLVADTKLALGDLGRFRREAHPDLTVIALTGSSGKTTTKEMIGAIL 131

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                   QI PT  I+    +N L  P  +     L          + + A+  G   +
Sbjct: 132 S-------QIAPT-LITRGNLNNDLGVPMML-----LELTDEHRFLVIELGANHLGEIAY 178

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++       N+G  H+     +     AK  ++  L  +    + ++DD Y  E++
Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFY-PELL 237

Query: 258 KRAHNAGCRVLSVG 271
           K+A       LS G
Sbjct: 238 KQASKFTNLYLSFG 251


>gi|238020915|ref|ZP_04601341.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
 gi|237867895|gb|EEP68901.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
          Length = 443

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 141/329 (42%), Gaps = 63/329 (19%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + I+A+TG++GK++  S V  +CQ+SGL +   G   T              P+  A   
Sbjct: 108 DQIIAITGSNGKTTTTSLVGHLCQQSGLDTVVAGNIGT--------------PVLDA--- 150

Query: 175 SYLSSQGVTH--VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +L  QG +     +E SS  L+      +   A +  N+  DH++ +     Y   K +
Sbjct: 151 -WLQRQGKSADVWVLELSSFQLETTPC--LAAAAAACLNISEDHLNRYDDLLDYARTKDQ 207

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +F     +    I+ ADD + +  M R             Q ++  L +  A +    V+
Sbjct: 208 IFNGCRTQ----ILNADDPFCR-AMHRPEQ----------QTRYFSLAQA-ADYWLDPVS 251

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            S++ +D DF+     PL G     NAL A  LC AIGI  + +++H++    +P R E 
Sbjct: 252 GSLKQRDSDFMAQSQIPLQGNHNTANALAALALCEAIGIPRSELVQHIQTFKGLPHRVEK 311

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +G  ++ G +Y+D +  +N    +   +  I      +V   GG   QGK         D
Sbjct: 312 IG--AKDGVVYIDDSKGTN----VGATVAAIAGLPQKIVLIAGG---QGK-------GQD 355

Query: 409 LADIAIVTDDNPRS-----EDPEKIRAEI 432
            A +A V  D  R+      D  KI AE+
Sbjct: 356 FAPLASVLQDKARAVFLIGVDAPKIAAEL 384


>gi|307544547|ref|YP_003897026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
 gi|307216571|emb|CBV41841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
          Length = 455

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 156/384 (40%), Gaps = 60/384 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  +++D+R +  G +FVA+VG + D H FI QA   GA A +V             
Sbjct: 24  EVALTSITTDTRRLGPGALFVALVGERFDAHDFIAQAREAGAAAALVER----------- 72

Query: 87  RSNTPI--LVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           R + P+  L V +TR  L L   A RL    P  ++AVTG SGK++V   +  I  RSG 
Sbjct: 73  RQDDPLPQLEVADTRLALGLLGRARRLAWGGP--LVAVTGNSGKTTVKQMLATILSRSGA 130

Query: 143 SSFQIG--------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +    G        P + +    +  R            +++ +S  +  V+V  +  G 
Sbjct: 131 TLATRGNLNNDFGAPMTLLELDGEHRRAVVELGANHLGEIAWTASLAMPDVAVITNVTGA 190

Query: 195 DQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 G+  IA +       L RD +        YF                   +A  
Sbjct: 191 HVGEFGGMGRIAQAKGEILGGLSRDGVAVLNRDDRYFR-----------------FWASQ 233

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGE 309
           A S+EV+            +  +G+      VC    +   T+S +G++   +   L G 
Sbjct: 234 AGSREVLD---------FGLEDEGRLRAETLVCDEFGRYAFTLSFDGRELGRVQLALMGR 284

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVD-YAHTSN 367
             V NAL AA   +A+  D A VL  LE++  V GR   F G N  G R+  D Y     
Sbjct: 285 HNVANALAAAAAALALRADPADVLAGLEEVEPVAGRLGVFAGRN--GARLLDDTYNANPG 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCG 391
           +++  L+ + T+ + R  ++   G
Sbjct: 343 AVKAALETLATLPAPRWCLLGAMG 366


>gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-66c26]
 gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-76w55]
 gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-97b34]
 gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-37x79]
 gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
 gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile QCD-32g58]
 gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
          Length = 457

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/432 (20%), Positives = 170/432 (39%), Gaps = 67/432 (15%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           LIY D+ + ++ + I               DSR   A   FVAIVG   DGH F+  A  
Sbjct: 17  LIYGDYNDCVSDIVI---------------DSREASAQNAFVAIVGENLDGHTFMKPAYD 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G +  + + +  ++  S+ I     ++ V +T   L   +     K     + VTG+ G
Sbjct: 62  SGCKTFIKNESNGIKLESSDIN----LIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +                ++ ++    +  L     + L   L  L+ +    V
Sbjct: 118 KTTTRDMIYS------------AISAKLNILKNEKNLNNHFGVPLT--LFNLNKEHECAV 163

Query: 186 SVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +E    G ++  + +D +       +N+G  H++   +Q+    AKM +      + + 
Sbjct: 164 -IEMGMSGFNEIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNF-DETNT 221

Query: 244 AIIYADDAYSKEVMKRAH---------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            I+  DD +   + ++ H         N    +    Y  +   L  +C I+ K++    
Sbjct: 222 LIVNGDDKFLSTLKEKEHVYKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKE---- 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 +   P  GE  +YNA+ A   GLC+ I +D   + + L+       R + +  N
Sbjct: 278 ------EIFIPTIGEHNIYNAMSAILVGLCLNISLD--YIKKGLKNFKGTKMRLDII-KN 328

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALD 408
            +   I   Y  + +S++  LK I     GR + + G     G   + G R ++GK +++
Sbjct: 329 EKLTIINDSYNASPDSMDAALK-ILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMN 386

Query: 409 LADIAIVTDDNP 420
             DI I   +N 
Sbjct: 387 NTDIIITIGENS 398


>gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola]
          Length = 453

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 9/123 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  I+E+  +++ I  G +F+A++G   D H+FI  AI +G  AI+             
Sbjct: 20  KDLLIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDAIKKGCSAIITHKH--------- 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           I+S+   ++V NT   L   A+ +  +    ILA+TG+ GK++V      I ++ G +  
Sbjct: 71  IKSHISYIIVQNTSFALGQIANWIRNQTNAKILAITGSCGKTTVKEMTASILRKYGNTIS 130

Query: 146 QIG 148
            IG
Sbjct: 131 TIG 133


>gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
          Length = 510

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 149/356 (41%), Gaps = 44/356 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQDFSA 84
           DSR I +G +F+A+ G + DGH F   AI +GA            AIVV  +    +   
Sbjct: 34  DSREIGSGDLFLALPGARVDGHDFAATAIEKGAVAVLGARPVGVPAIVVPVSGETDNRVM 93

Query: 85  TIRSNT--PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            + S+T      V      L+ + ++        ++ VTG++GK+S    +  + +  G 
Sbjct: 94  ALESDTDGAGAAVLTALGDLAAYCTKSLAADGLTVVGVTGSAGKTSTKDLIAAVLRPLGE 153

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQH 197
           +    G      SF  +N +  P     A A +      +S++G  H++  A    L   
Sbjct: 154 TVAPPG------SF--NNEIGHPWTALRATASTKFLVLEMSARGEGHIAALAK---LAPP 202

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ G++L      N+G  H+    +++A   AK  L E  LP +  A++ ADDA    + 
Sbjct: 203 RI-GVEL------NVGTAHLGEFGSREAIARAKGELVEA-LPVDGVAVLNADDAAVAAMA 254

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            R      RV+  G  + +      V   H +   T+   G        + GE QV+NAL
Sbjct: 255 SR---TAARVVFYGTAEAQVRATDVVLDAHARAAFTLHTAGGTAPVALKVHGEHQVHNAL 311

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +A + +  G  +A V E L       P R +   T+  GG   V+  + +N   M
Sbjct: 312 ASAAVGLECGATTAQVAEALSGAGAASPRRMDVFTTD--GGVTVVNDTYNANPDAM 365


>gi|302389517|ref|YP_003825338.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200145|gb|ADL07715.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
          Length = 461

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 149/349 (42%), Gaps = 54/349 (15%)

Query: 53  KEDG-HLFIPQAIA--QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           KE+G  +FI    A  +GA+ +VVSSA   +  ++   I+++ P  V+       +L A+
Sbjct: 47  KEEGARVFIGHDAANIRGADLVVVSSAIPPTNPEYVEAIKNDIP--VIHRADMLSTLMAT 104

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           R         +AV+G  GK++  S +  + ++ G+S     PT  I     D        
Sbjct: 105 R-------KGIAVSGAHGKTTTTSMISLVLEKGGMS-----PTVVIGGELND----IGGN 148

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQA 225
             L K   Y+ ++              D+     +KL       TN+  DH+D+++  ++
Sbjct: 149 ATLGKG-EYMVAEA-------------DESDGSFLKLTPYIAVVTNIENDHMDHYKDMES 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHL 279
              A  R F   L K+  A++  D+ + ++VMKR         + G      Y  K IH+
Sbjct: 195 MKEA-YRKFIMNLKKDGFALLGTDNEHVRDVMKRVD---VPYFTYGINYPADYMPKNIHI 250

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +    + ++ +V    E +  +    +PG   +YNA  A  +   +G+    +   L+  
Sbjct: 251 E---GVDSRFEVYYRNE-RLGELELHVPGMHNIYNATAAVAVGHRLGLKMEDIAGALQAF 306

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             V  RF+ +G    G R+  DYAH    ++  LK  + +   ++  VF
Sbjct: 307 RGVQRRFQLIGEVG-GVRVVDDYAHHPTEIKATLKAAKLLNPNKLYAVF 354


>gi|262370857|ref|ZP_06064181.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
 gi|262314219|gb|EEY95262.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
          Length = 482

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 136/331 (41%), Gaps = 42/331 (12%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGA  IVVS+A   +  +  A I + TP++      +   +    +  +H    +AV GT
Sbjct: 80  QGANVIVVSTAIDAENPEIKAAIETRTPVV------RRAEMLGELMRYRHG---IAVAGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V   C    L+   + PT  I      NR    + +         +S+ + 
Sbjct: 131 HGKTTTTSLVT--CM---LAEENLDPTYVIGGLL--NRTGVNAALG--------ASRFIV 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             + E+ +  L       ++ +A   TN+  DH+D +             F + LP    
Sbjct: 176 AEADESDASFLH------LQPMATIVTNIDADHMDTYGGSFDVLKDTFVQFLQKLPFYGL 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DDA  +E+M R    G  +++ G+  +   ++ V       Q   +V  KD + L
Sbjct: 230 AVVCGDDANIREIMPR---IGRPLITYGFN-EDNDIRAVDIEQEGMQSHFTVLRKDREPL 285

Query: 304 ---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIY 359
                LPG   + NAL A G+    G+  A +   LE    V  RF+  G  +  GG + 
Sbjct: 286 RLTINLPGLHNILNALAAIGIATDEGVSDAAIARALESFSGVGRRFQVQGEFDIDGGNVK 345

Query: 360 V--DYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  DY H    +E  +K  R     R +V+ 
Sbjct: 346 LVDDYGHHPKEVEATIKAARASHPDRRLVMM 376


>gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
 gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
          Length = 460

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 143/321 (44%), Gaps = 25/321 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS D+R IQ G +++ I G + +GH F+ +AI  GA    V++ ++  + +    ++
Sbjct: 27  IEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKAIENGA----VATLWNKDEENPP--TD 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +++VD+T   L   A     +    ++ +TG++GK++    V+ +      +++++  
Sbjct: 81  ISVILVDDTLVALQQLAKSYRHELDIKVVGITGSNGKTTAKDMVKAVLD----TTYRVLK 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    +F  +N +  P  I     L    +  +  + +  SS G  +   +  +      
Sbjct: 137 TD--GNF--NNHIGMPLTI-----LRLDETHDIAVLEMGMSSRGEIEFLSNLAEPDVAII 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H+    ++     AK+ +   L P  +  ++Y  D     +  R  N     ++
Sbjct: 188 TNIGESHLQDLGSRDGIAEAKLEITSGLAP--TGQLVYNGD--EPLLTSRVVNPVFETMT 243

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  +   ++   + A       T+S E   + F  P+ G+  V+NAL A  +    G+D
Sbjct: 244 FGSSEQNDLYPSAISAEELGTTFTVSRE-TTYSFFIPVLGKHNVHNALSAIAVGHYFGLD 302

Query: 329 SALVLEHLEKLHVVPGRFEFV 349
           +  + + L++L +   R E V
Sbjct: 303 NETIAKGLKELKLTNMRMELV 323


>gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 484

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 41/316 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N VS DSR++  G +F AI G+  DG  FI QA   GA  +VVS    + D S      
Sbjct: 28  VNGVSVDSRNVHKGNVFFAIKGDHYDGRQFIEQAFDAGAIGVVVSKQGGI-DISGKC--- 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--I 147
            P+++VD+ +  L   A     K    I+ +TG++GK++    +  +     LS F   +
Sbjct: 84  LPLILVDDVKTALGDLARHYRRKLNAKIIGITGSNGKTTTKEMLYHL-----LSHFAPVV 138

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            P  + ++F     +  P  I+    +      G+  +   A    L    + G+  IA 
Sbjct: 139 KPQKSFNNF-----IGVPLTIF---EIESKHKYGILEMGTNAPGEILRLSEI-GLPDIA- 188

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCR 266
              N+ + H++   + +     K  + + L  KE+   +Y AD+    E+   A   G  
Sbjct: 189 VILNISKTHLEGLGSIEGVALEKGDILKNL--KENGVFVYNADNPLCCEI---ADKFGGN 243

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVE-------------GKDFDFLFPLPGEFQV 312
            +S G  Q   I         N    TI ++              + F+    +PG   +
Sbjct: 244 KISFGLGQNAQIRGTDAKKKGNGSVFTIDIDYNTFRLCGVKGGGRRQFEIQLQVPGHHNI 303

Query: 313 YNALVAAGLCIAIGID 328
            N L +  +C A+G+D
Sbjct: 304 SNCLASFAVCHALGLD 319


>gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
 gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
          Length = 453

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 150/359 (41%), Gaps = 41/359 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I++G +FVA+ G++ DGH ++         +   ++  +       +    P  +V
Sbjct: 30  DSRRIRSGELFVALTGSRADGHDYL---------SAARTAGAAAALLERAVPEPLPQWIV 80

Query: 96  DNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            + R  L+     +  +H     I+AVTG++GK++V   +  I  R G         +  
Sbjct: 81  ADGRGTLAALGCWVR-EHCAATQIVAVTGSNGKTTVKEMLAAILARHG--------ATLA 131

Query: 154 SSFAQDNRLTTPSPI-YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +S   +N L  P  +  L +   Y        + + AS+ G  +     ++   G  TN 
Sbjct: 132 TSGNYNNELGVPLTLCRLQRRHRY------AVLELGASAPGQIRRLTQWVRPSVGVITNA 185

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+D   +       K  LFE  LP +  A+I  DDA++    + A    C  ++ G 
Sbjct: 186 GPAHLDGFGSVAGVARGKGELFET-LPDDGIAVINVDDAFANLWQRLARPRRC--ITFGL 242

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +   ++   A     Q+ +  +G+      PL G     NAL +A   +A+ +  A +
Sbjct: 243 D-RRAEVRATTAADG--QLELRWDGRVLPVRLPLLGRHNQLNALASAATALALELPGAAI 299

Query: 333 LEHLEKLHVVPGRF---EFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
              LE +  VPGR    E +G    G RI  D Y     SL   ++ +   +  R +V+
Sbjct: 300 RAGLEAMRPVPGRLCWREGIG----GARILDDTYNANPASLAAAIRVLAENSQRRWLVL 354


>gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
 gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
          Length = 461

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 37/337 (10%)

Query: 27  ERKINE----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ +NE    VS D+R I  G +++ I G++ DGH F+ +AI  GA A +     ++Q+ 
Sbjct: 23  EKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKK--NVQNP 80

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 N P++ V++T + L   A     +    ++ VTG++GK+S    V  +      
Sbjct: 81  PV----NIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA---- 132

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + F++  T    +F  +N +  P  I     LS   +  +  + +  SS G  +      
Sbjct: 133 TKFKVQKTE--GNF--NNHIGLPLTI-----LSLEENTEMAVLEMGMSSRGEIEFLSKLA 183

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A   TN+G  H+    ++ A   AK+ +   L  ++    +Y  D         + N
Sbjct: 184 RPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL--QDGGVFVYNGDEPLLTNRVPSMN 241

Query: 263 AGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                ++ G      Y    + L+         Q       ++  F  P+ G+  VYN L
Sbjct: 242 LAAETITFGDARANNYYPTSVTLQATGTYFKMNQ------DENIVFYLPVLGKHNVYNTL 295

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +  +    G+    + + L  L +   R E V T +
Sbjct: 296 ASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTEN 332


>gi|58699164|ref|ZP_00373984.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534320|gb|EAL58499.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 113

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 8/102 (7%)

Query: 396 QGKRPIMGKIALDLAD------IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
           QG   +M ++ L + +       A VTDDN R EDP KIR +I+   P  +E G R EAI
Sbjct: 7   QGSLKVMEQVKLCVEEKKSWKLSACVTDDNSRDEDPAKIRHDILLHCPDALEIGGRREAI 66

Query: 450 RTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
              +++  N+  +L+VAGKG+E   I+ N   + S D ++I+
Sbjct: 67  EKGVDIAYNEGMILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 107


>gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 468

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  V  DSR +Q G +FV + G + DGH F   A+ +GA A++        D      
Sbjct: 22  RTVTRVQIDSRVVQPGDLFVCLPGERVDGHSFAADAVRKGAVAVLAQRPLPEVD------ 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              P+L+V +T K L   A    G     ++AVTG++GK++V   + Q
Sbjct: 76  -GAPVLLVRDTFKALGDLAVAWRGSVQSRVVAVTGSAGKTTVKELIAQ 122


>gi|163843689|ref|YP_001628093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           ATCC 23445]
 gi|163674412|gb|ABY38523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis ATCC
           23445]
          Length = 467

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSREEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
 gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
          Length = 458

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 37/337 (10%)

Query: 27  ERKINE----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ +NE    VS D+R I  G +++ I G++ DGH F+ +AI  GA A +     ++Q+ 
Sbjct: 20  EKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKK--NVQNP 77

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 N P++ V++T + L   A     +    ++ VTG++GK+S    V  +      
Sbjct: 78  PV----NIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + F++  T    +F  +N +  P  I     LS   +  +  + +  SS G  +      
Sbjct: 130 TKFKVQKTE--GNF--NNHIGLPLTI-----LSLEENTEMAVLEMGMSSRGEIEFLSKLA 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A   TN+G  H+    ++ A   AK+ +   L  ++    +Y  D         + N
Sbjct: 181 RPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL--QDGGVFVYNGDEPLLTNRVPSMN 238

Query: 263 AGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                ++ G      Y    + L+         Q       ++  F  P+ G+  VYN L
Sbjct: 239 LAAETITFGDARANNYYPTSVTLQATGTYFKMNQ------DENIVFYLPVLGKHNVYNTL 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +  +    G+    + + L  L +   R E V T +
Sbjct: 293 ASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTEN 329


>gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 421

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 152/363 (41%), Gaps = 39/363 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R      +F  + G   DG+ F+P A+ +GA+ +V S             S    
Sbjct: 12  VTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDP--------QWNSEPKA 63

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VV +T   L   A+    K    I+A+TG++GK++    +  +  +S            
Sbjct: 64  IVVKDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQS------------ 111

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIK-LIAGSF 209
            ++   +  L      +L   L+ L     T +++    ++H  +  RL  I     G  
Sbjct: 112 FNALKTEGNLNN----HLGVPLTLLRLTFETDIAIVEMGANHPGEIARLCQIADPDFGYI 167

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN GR H++   + +    AK  L+ + L K++  I +++D   +  +   +        
Sbjct: 168 TNFGRAHLEGFGSFEGVIRAKSELY-QYLKKDNKCIFFSEDNSLQRELLEGYEPTYSFSL 226

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA--IGI 327
            G +G  + L  + +I      T+++E    +F   L G +   N  +AA +CI     +
Sbjct: 227 EGREGANLQLSLLKSIP-----TVTLEWAGQEFSSALIGNYNATN--IAAAMCIGRYFKL 279

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
            +  +   +E       R +FV   +RG R+ +D Y    +S+   ++  + + S   ++
Sbjct: 280 SAEAIRRGVEGYIPTNNRSQFV-EKTRGNRVLMDAYNANPSSMHAAIEAFQALPSAHKVL 338

Query: 387 VFG 389
           + G
Sbjct: 339 ILG 341


>gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
 gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
          Length = 448

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 134/334 (40%), Gaps = 42/334 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ  + +    L  Q    P     +++  V++D+R ++   IF+A  G   DGH F 
Sbjct: 1   MTLQAPLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFA 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ QGA A +V            I + TP LVV +T             +    I+A+
Sbjct: 61  ESAVQQGAIAAIVDHP---------IDAATPQLVVPDTLVAYQRLGQWWRQQFQIPIIAI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +   +G         S + + A  N     + I + K L  L++ 
Sbjct: 112 TGSVGKTTTKELISAVLGTAG---------SVLKTEANYN-----NEIGVPKTLLGLTAD 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +  VE    G  +  +  +  IA    G  TN+G  HI    +++A   AK  L  +
Sbjct: 158 H-DYAVVEMGMRGPGE--IAELSQIAQPTIGVITNVGTAHIGRLGSREAIAQAKCELLAQ 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P ES A++ AD++   E  +   + G +V      G              Q    +++
Sbjct: 215 -MPAESLAVLNADNSLLIETAQTVWS-GAQVTYGLDSGDL----------QGQLADQTLQ 262

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             D  F  PLPG     N L A  +   + +D A
Sbjct: 263 VADHSFPLPLPGAHNALNYLAALAIAQHLHLDLA 296


>gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia
           stali symbiont]
          Length = 453

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 72/136 (52%), Gaps = 9/136 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++ ++S   +   +  I +V++D+R +  G +FVA+VG + D + F   AIA GA+A++
Sbjct: 7   QILAEISGGQLHGSDLTIADVTTDTRKVTLGSLFVALVGERFDAYDFAADAIASGAQALL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+   ++         + P +VV +TR       + +  +    ++ +TG+SGK+SV   
Sbjct: 67  VNRRLAV---------DVPQVVVADTRIAFGQLGAWVRQQAKARVVGLTGSSGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIG 148
              I ++ G + +  G
Sbjct: 118 TAAILRQCGETLYTAG 133


>gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 455

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 145/371 (39%), Gaps = 52/371 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N++  DSR I  G +F+ + G + DGH FI  A   GA AI          FS      
Sbjct: 26  LNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFENGAVAI----------FSEKDLPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V++  K     A     K   +++AVTG++GK+S    +  +             
Sbjct: 75  KPHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVL------------ 122

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
           ++T  ++         + I L   + ++       V      H  D H L  I +     
Sbjct: 123 STTYKTYKTQGNYN--NEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAV 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVMKRAHNA 263
            T +G  H++Y  ++      KM++ + +   +S  I+ A      D+Y  E        
Sbjct: 181 LTLVGEAHLEYFGSRDKIAQGKMQIVDGM---DSNGILIAPGDSIIDSYLPE-------- 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              V+  G   +      V  I   K  +T +          PLPG++   NA+VAA + 
Sbjct: 230 NQMVIRFGDHQEL----NVTDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK---NIRT 378
             + +    ++E LE + +   R E+    + G  I  D Y     ++ +IL+   NI  
Sbjct: 286 KLLAVADEDIIEALESVQLTANRTEWKKA-ANGADILSDVYNANPTAMRLILETFANIAK 344

Query: 379 ITSGRIIVVFG 389
              G+ I V  
Sbjct: 345 NPGGKKIAVLA 355


>gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
 gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
          Length = 870

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 48/341 (14%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFS 83
           ++ +    S D+R I  G +FVA+ G + DGH ++  AI +GA  ++V + +  S+ +  
Sbjct: 20  KQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLLVETRHIESMPEAE 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                    ++V++TR+ L  +AS +  +    I+AV G  GK+S+   +  +  R+   
Sbjct: 80  QERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMKEAIASVLSRN--- 136

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGI 202
                  +T  S+   N L     + +  +L  L  Q    V      H  + H+L   +
Sbjct: 137 ------YATFRSWKNYNDL-----LGIPLSLGRLEPQHEYAVLELGCDHPGELHKLCQMV 185

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEV 256
           K   G  TN+          Q  YF +   L +EL      LP E     + +D+ ++ V
Sbjct: 186 KPHIGILTNVA-------PVQLQYFGSLEHLAKELSELLYSLPPE--GCFWLNDSDARLV 236

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----------DFLFP 305
              AH    R  +V    + + ++++    N+ Q+ +  EG  F                
Sbjct: 237 EIVAHYQQQRGSAVP-DIRPLGIREI----NETQIRVGWEGLSFTLEQEGEMGTLTLASR 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           L G   +   L A  +  A G+ +  V E LE+L  + GR 
Sbjct: 292 LLGRQHISTMLAAYRIGRACGMSAEEVSEALEQLGPIEGRL 332


>gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016]
 gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 474

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 164/409 (40%), Gaps = 57/409 (13%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ + + D    ++   I   +++  K   +S+DSR +Q G IF+A+ G K +G+ ++  
Sbjct: 12  LEHMSFDDIVRAVSGKVILKGKYKGHK--NISTDSRKLQKGDIFIALKGEKFNGNEYVES 69

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  +GA   +V     ++  S  I   T I+ V N    L   A     K    I+ VTG
Sbjct: 70  ASKKGASICIVD---EVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTG 126

Query: 123 TSGKSSVASFVQ-------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + GK++    +        ++ +  G  + QIG    +  F  DN        Y    L 
Sbjct: 127 SVGKTTTKDIIAAVLGVKFKVFKTEGNFNNQIGLPHML--FKLDNS-------YEVAVLE 177

Query: 176 Y-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ +G  H  V+A+   +               TN+ R HI    +++   NAK+ + 
Sbjct: 178 MGMNQRGEIHNMVKAARPDI------------AVITNVLRAHIGNLGSRKNILNAKLEI- 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKR---------AHNAGCRVLSVGYQGKFIHLKKVCAI 285
            +   KE+  II +D+     + ++           N+      +  +   I   KVC  
Sbjct: 225 TDFFSKENTLIINSDNDLLSTLEEKNFTLNRVGLGENSDVSAYDIVVEEDCIEF-KVCKN 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           + K +           FL  +PG++ + N+L+A      + +    + E ++ + +   R
Sbjct: 284 NVKTEER---------FLINMPGKYNIVNSLLAISCGRLLNMSYDEIREGVKNIKLTSMR 334

Query: 346 FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            E +    +   I  D Y     S++  +  ++   S R I V G  G+
Sbjct: 335 MEII--RKKEFTIINDCYNANPESMKAAIDVLKEFKSNRKIAVLGTMGE 381


>gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
 gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
          Length = 453

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R I+   +F+A+VG + D H F  QAI  GA+A++V  A  +         +
Sbjct: 24  ISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAKALMVERALDV---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              +VV NT++ L      ++ +     +A+TG+ GK++V   V  I    G
Sbjct: 75  VAQIVVSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMVASILSAKG 126


>gi|163841228|ref|YP_001625633.1| UDP-N-acetylmuramate--L-alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
 gi|189029025|sp|A9WRD7|MURC_RENSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|162954704|gb|ABY24219.1| UDP-N-acetylmuramate--alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 465

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 150/365 (41%), Gaps = 41/365 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           R I+   SD++   AG + +  +G     GH    Q +A GA+ +V+S+A         I
Sbjct: 31  RGISVSGSDAKE-SAGLLELGALGASVHAGH--AAQNVA-GADTVVISTA---------I 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLS- 143
           R+N P L    T+    L  S         + ++AV GT GK++  + +  + + +GL  
Sbjct: 78  RANNPELEFARTQGLRVLHRSEALAAAMAQDTVVAVAGTHGKTTTTAMIAVLLREAGLDP 137

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           SF +G T                      AL   ++ G   + V A +   D   L+   
Sbjct: 138 SFAVGGT--------------------VPALGVNAAHGAGGIFV-AEADESDGSFLNYRP 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            IA   TN   DH+D++ T +A   A  + F  L+P +   +   DD  +  + K+A   
Sbjct: 177 QIA-VVTNAEPDHLDHYGTAEAVMEA-FQSFIGLIPADGLLVACTDDDGALALAKQAAAR 234

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G RV++ G              H   +    +  +       +PGE    NAL A  + +
Sbjct: 235 GTRVVTYGRSAAAEVWLINDGAHRAIEFITPIGPQRLVLELQVPGEHNALNALAAFAVAL 294

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+++   L  L        RFEF G   RG R++ DYAH    +   L   RT+  G 
Sbjct: 295 ELGVEAEQALSALAGFTGAARRFEFKG-QVRGIRVFDDYAHHPTEVRAALTAARTVADGH 353

Query: 384 IIVVF 388
            ++V 
Sbjct: 354 HVLVL 358


>gi|302391532|ref|YP_003827352.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM
           5501]
 gi|302203609|gb|ADL12287.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM
           5501]
          Length = 469

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 28/243 (11%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+  DH+DY+++     +   + F   LP +   I+  DD   ++++ R       
Sbjct: 176 GVVTNIEADHLDYYESCSEIIDTFSK-FLNSLPSDGVGIVSLDDNEIRDMVDRVD---TD 231

Query: 267 VLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +++ G   K   + K   +     + V    + +  +    +PG+  + NAL   G+ + 
Sbjct: 232 LITYGLNNKAEIMAKDIELQEFGSKSVIYRYQDRLGELKLNVPGKHNLSNALAVIGIGLH 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IG++ + + E L+    V  RFE +G   RG  +  DYAH    LE  L     +   RI
Sbjct: 292 IGLEFSKIAEALKDFTGVKRRFEKLG-KYRGAVLVDDYAHHPTELEATLAAANNMDFERI 350

Query: 385 IVVFGCGGDRDQGKRPIMGK-------IALDLADIAIVTDDNPRSEDP------EKIRAE 431
           I VF       Q  R    K       +A   AD  I+TD     E+P      EKI AE
Sbjct: 351 IAVF-------QPHRYTRTKFLLEEFSLAFGDADEVIITDIYASGEEPIPGVKAEKI-AE 402

Query: 432 IIH 434
           +I+
Sbjct: 403 LIN 405


>gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC
           27126]
          Length = 431

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 131/324 (40%), Gaps = 61/324 (18%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G +++A+ G   +GH FI  A   GA A++ S     +D + ++    P+++V++T++ L
Sbjct: 1   GAVYLALKGPNFNGHDFISTAEKAGASAVIAS-----EDVATSL----PVIMVEDTKEAL 51

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            L  + +        +A+TG+SGK++V      I +R G         +T  +F  +N +
Sbjct: 52  GLLGAAVKAYVAPKTIAITGSSGKTTVKEMCAAILERRG------NVLATNGNF--NNDI 103

Query: 163 TTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             P + + L     Y   + G  H+   A +  L       +K    +  N    H++  
Sbjct: 104 GVPLTLLRLEPQHEYAVMELGANHIGEIAYTTNL-------VKPDVATIVNAAASHLEGF 156

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +      AK  +F+  L  +  A++  D  +S+                 +QGK    K
Sbjct: 157 GSLLGVARAKSEIFKG-LGSDGVAVVNVDSQFSEF----------------WQGKLKQTK 199

Query: 281 KVC--------AIHNKQQVTISVEG----------KDFDFLFPLPGEFQVYNALVAAGLC 322
            +         A    + +TI ++G           D      +PG   V NALVAA L 
Sbjct: 200 TLTFSPQQKNDADFRAEDITIGLDGCAAFHLVCPQGDMSIQLTIPGVHNVGNALVAAALT 259

Query: 323 IAIGIDSALVLEHLEKLHVVPGRF 346
           + +G     V + L  +  V GR 
Sbjct: 260 LQVGASLENVRDGLLAMKQVSGRL 283


>gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 487

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 153/394 (38%), Gaps = 70/394 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI--- 86
           I  +S DSR ++   +FV I+G   D H F+ QAI  GA A+  S     ++  A I   
Sbjct: 28  IRHISLDSRKMEGDDLFVPIIGENVDAHGFLCQAIVNGAAAVFTSRHRQPEEVRADIIRQ 87

Query: 87  ----------RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-- 134
                       +   + V +T+K L  F      +    ++ +TG+ GK++    +   
Sbjct: 88  CGDDVPRMEAAMSAAWIEVADTKKALQDFGIYCRSRQKLPLVGITGSVGKTTTREMIAAA 147

Query: 135 -----QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 + +  G S+ Q+G   TI++  +  ++                  GV  + +  
Sbjct: 148 LSAGFTVYKTPGNSNSQVGVPITIAAIPKQAQI------------------GVIELGMSE 189

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                   R+   ++     TN+G  HI+   +Q      K+ + ++ + +    I+  D
Sbjct: 190 PGEMTRIARI--ARVDCAVMTNIGVTHIEQLGSQDNILKEKLHI-QDGMAENGSLILNGD 246

Query: 250 DAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKK----VCAIHNKQQVTISVEGKD 299
           D   + V+   +    R +  G      Y+G+ +HL        A+H  ++VT+ +    
Sbjct: 247 DRLLRSVIPEGNR---RKILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKRVTVRLR--- 300

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G   V NAL A  +    GI        LE+     GR +      +GG   
Sbjct: 301 ------VMGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQIF--TLKGGITV 352

Query: 360 VDYAHTSNSLEM-----ILKNIRTITSGRIIVVF 388
           +D ++ ++ + M     +L ++    +GR I V 
Sbjct: 353 IDDSYNASPVSMKAGLEVLGSMEPEGTGRRIAVL 386


>gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
 gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
          Length = 464

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 9/134 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +    EL++   + P    E ++++V++DSR    G +F A+ G   D H F+ Q   QG
Sbjct: 6   FAALSELLSAKEVNPPS-AELEVDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VV  A    D + ++    P LVV NT+K L   A  +  +    + A+TG+SGK+
Sbjct: 65  AKILVVEHA----DPAVSV----PQLVVANTKKALGQLALWVRQQVNPKVAAMTGSSGKT 116

Query: 128 SVASFVQQICQRSG 141
           +V      I Q++ 
Sbjct: 117 TVKEMTAAILQQTA 130


>gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
 gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
          Length = 457

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 123/293 (41%), Gaps = 56/293 (19%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R +Q G +F+A+ G   DGH F+ +A+ QGA A +        DF        P 
Sbjct: 45  ICTDTRGLQPGEVFLALRGANFDGHQFVQRAMEQGAIAAITDQVLP-GDF--------PQ 95

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN-----ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           LVV +T     L A +  G+   +     ++AVTG+ GK++    +  +    G      
Sbjct: 96  LVVKDT-----LVAYQTLGRWWRDTFQIPVIAVTGSVGKTTTKELIAAVLGLQG------ 144

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206
              S + + A  N     + I + K L  L++     V +E    GL +  +  +  IA 
Sbjct: 145 ---SVLKTEANYN-----NEIGVPKTLLQLTTDHAYAV-IEMGMRGLGE--IASLTRIAR 193

Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+G  HI    +++A   AK  L  E +P  S A++ AD+    E      + 
Sbjct: 194 PDIAVITNVGTAHIGRLGSREAIAQAKCELLAE-MPTTSVAVLNADNPLLIETATEVWSG 252

Query: 264 GCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             + LS G     +  HL         Q   + VEG+ F    PLPG+    N
Sbjct: 253 --KTLSYGLTAGDLRGHL---------QGDMLEVEGQCFP--LPLPGQHNALN 292


>gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
 gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
          Length = 448

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 150/372 (40%), Gaps = 45/372 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ V+ DS+ ++ G +F A+ G   DGH F+ QA   GA A VVS  Y    F     
Sbjct: 24  KKISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGDSF----- 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               ++VV++T + L              I+ +TG+ GK++  +F Q +   S +     
Sbjct: 79  -GLELIVVNDTTEALKEAGESQSHLLQGTIVGITGSIGKTTTKAFTQTLL--SSVYRVYA 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            P S       +++LT P  + +A        +    + +  S     Q  L  ++    
Sbjct: 136 SPKSY------NSQLTVPLSLLMADG-----DEDFVILEMGVSEPKNMQDLLSIVEPEVA 184

Query: 208 SFTNLGRDHIDYHQTQ--QAYFNAKMRLF----EELLPKESPAIIYADDAYSKEVMKRAH 261
             TN+   H+     Q  Q     K ++      +LLPK+SP        +    +K++ 
Sbjct: 185 VITNITDQHVMNFPDQGVQGIAEEKSQILCNSRVQLLPKDSP--------WYPHFIKQSM 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +A     +   +    + K +     K  V IS    D DF    P +    N L++  L
Sbjct: 237 SAEKFSFAFYDETADFYYKVI----RKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSL 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
              + +    ++     L + P RFE    + R G   ++ A+ +   E +L  +  I  
Sbjct: 293 AWLLDVPVDRIIHSCCDLQLPPMRFE---QSIRNGIQIINDAYNACP-EAMLAALDAIPH 348

Query: 381 ---SGRIIVVFG 389
               G++I++ G
Sbjct: 349 PSEGGKVILILG 360


>gi|306844332|ref|ZP_07476924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
 gi|306275404|gb|EFM57145.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
          Length = 467

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGVDDAYCQAIADRLHGAGIRVMRISKEKHLDRGYFADGAKLLWSQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|114331393|ref|YP_747615.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
 gi|114308407|gb|ABI59650.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
          Length = 862

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 22/319 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTGT+GK++ A  +  I + +     ++G   T   F  +  + T        A + 
Sbjct: 471 VIAVTGTNGKTTTARLIANILEHN---RMRVGIACTDGVFVNNQCVDTGDCSGPKSARNI 527

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQ--TQQAYFNAKMRL 233
           L    V    +E +  G+ +  L          TN+GR DH+      T +     K  +
Sbjct: 528 LFHPDVDAAVLETARGGILREGLGFDYCDVAVVTNIGRGDHLGLANINTAEELAAVKRTI 587

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNA----GCR-----VLSVGYQGK-FIHLKKVC 283
            E + P++  A++ ADD     +      +     C      +L    QGK  I+L++  
Sbjct: 588 VENVNPEKGVAVLNADDPLVLGMASHCPGSVTFFSCNSRHPVILEQRIQGKRVIYLEEQH 647

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL---- 339
            +  +      +   +          FQ+ N + A G  +A G+D +++   L       
Sbjct: 648 IVVTEAGTERRISLSNIQLTKNGMISFQIENVMAAIGAGLASGLDWSIICAGLADFVSDA 707

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VPGRF     N R   +  DY H  +++E ++  I  I + +  VV    GDR     
Sbjct: 708 QTVPGRFNLF--NYREATLIADYGHNPDAMEALICAIDHIPAKKRTVVISAAGDRRNEDI 765

Query: 400 PIMGKIALDLADIAIVTDD 418
            +  +I  D+ D  ++  D
Sbjct: 766 RLQTQILGDVFDEVVLFQD 784


>gi|306843220|ref|ZP_07475831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
 gi|306286585|gb|EFM58162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
          Length = 467

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGVDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
 gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
          Length = 460

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 143/332 (43%), Gaps = 25/332 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S+F        I  VS D+R IQ G +++ I G + +GH F+ +AI  GA A + +    
Sbjct: 16  SVFHSGNEATVIEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKAIENGALATLWNKD-- 73

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                    ++  +++VD+T + L   A     +    ++ +TG++GK++    V+ +  
Sbjct: 74  ----EENPPTDISVILVDDTLEALQQLAKSYRHELDIKVVGITGSNGKTTAKDMVKAVLD 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
               +++++  T    +F  +N +  P  I     L    +  +  + +  SS G  +  
Sbjct: 130 ----TTYRVLKTD--GNF--NNHIGMPLTI-----LRLDETHDIAVLEMGMSSRGEIEFL 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +  +      TN+G  H+    ++     AK+ +   L P  +  ++Y  D     +  
Sbjct: 177 SNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAP--TGQLVYNGD--EPLLTS 232

Query: 259 RAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           R  N     ++ G  +   ++   + A       T+S E   + F  P+ G+  V+NAL 
Sbjct: 233 RVVNPVFETVTFGSSEQNDLYPSAISAEELGTTFTVSRE-TTYPFFIPVLGKHNVHNALS 291

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           A  +    G+D+  + + L++L +   R E V
Sbjct: 292 AIAVGHYFGLDNETIAKGLKELKLTNMRMELV 323


>gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 456

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 8/112 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++D+R      +F A+ G   D H ++ +A+ QGA A+VV  A +          +
Sbjct: 25  VENINTDTRKAVFNSLFFALKGEHFDAHQYLDKAVEQGATALVVQKANT--------NIS 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           TP LVV +TR  L   A  L  K    I+A+TG+SGK++V      I Q++ 
Sbjct: 77  TPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSGKTTVKEMTASILQQTA 128


>gi|312126685|ref|YP_003991559.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776704|gb|ADQ06190.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 455

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 151/362 (41%), Gaps = 49/362 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G E ++ ++A S +D    + +    L +    +FL L       ++ +N++A+ GT G
Sbjct: 59  HGDETVIYTAAIS-KDNPELLAAKRMNLKIYERAEFLGLLM-----RNFKNVIAIAGTHG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182
           K++  S +  I +++  +     PT  + +F +    N +       + +A  Y+ S   
Sbjct: 113 KTTTTSMIGYILKKANYN-----PTILVGAFVKQLGGNFVIGSKDYLVVEACEYVDSFLK 167

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + ++                   G   N+  DH+DY +   +  N+  + F + +P   
Sbjct: 168 FNPTI-------------------GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSG 207

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFD 301
             +   DD   K+++ + H    +V+ +  + K  I    +    N       V+  + +
Sbjct: 208 FLVANCDDKNVKDIISKFHT---QVVCISTKEKADIFADNISC--NDGYYEFDVKNNNNE 262

Query: 302 FL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            L      +PG   VYNAL A  +   + ++S  + + L +      R E VG    G  
Sbjct: 263 ILAHIKLNIPGFHNVYNALAAFAVASKLRVESLTIEQALSEFCGASRRLEKVG-EFNGIY 321

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV 415
           +Y DYAH    ++  L  ++ I+ G+++ +F          + ++ + A  L LAD  IV
Sbjct: 322 LYDDYAHHPTEIKATLATLKKISEGKVLAIF--QPHTFSRLKTLLNEFAESLKLADKVIV 379

Query: 416 TD 417
           TD
Sbjct: 380 TD 381


>gi|312880222|ref|ZP_07740022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783513|gb|EFQ23911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
          Length = 467

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 90/432 (20%), Positives = 171/432 (39%), Gaps = 73/432 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           V  DSR +  G +F A+ G + DGH F+  A+A GA A++     +L+      R++ P 
Sbjct: 30  VCYDSREVTPGCVFAALPGERTDGHRFVGDAVAGGASAVL-----ALRGPGREARASLPG 84

Query: 92  -----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS--- 143
                 + VD+    L   A +   +    +  +TG+ GK++    + ++      S   
Sbjct: 85  SADVAWVFVDSVEDALVTLARQWRERVAPKVYGITGSVGKTTTRDLILRVLASVEPSHGA 144

Query: 144 ----SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
               + +IG  ST+     D R             + +   G  H               
Sbjct: 145 PKSYNTRIGCASTVLGMPPDTR-------------NLVLEYGTNHPGE------------ 179

Query: 200 DGIKLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDA 251
             I  +  SF       T +   H++     Q    AK+ L E    +++  + Y  D+A
Sbjct: 180 --ISALVASFPPQELFLTEVCPAHLEGLGDVQGVLAAKLELLES---RQAERVTYNFDNA 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLP 307
             ++ +  + +A  R L VG  G  + +++       +   + +     G+ + F   L 
Sbjct: 235 LLRDALHASFSA-ERSLGVGVSGGEVRIERAEPRWTSKGPVLDLHLREAGRSWSFASRLW 293

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G    Y    A  + +  G+    + E  E    +PGR   +  + R G   +D  + +N
Sbjct: 294 GRQHAYAWAFAWSVALRRGVGEEALREVAETSLPLPGRGRVL--SDREGLWILDETYNAN 351

Query: 368 --SLEMILKNIRTITSGRIIVVFG-CGGDRDQGK------RPIMGKIALDLADIAIVTDD 418
             S+ + L+N+  ++S    V +   GG R+ G+      R I+GK+      + +  + 
Sbjct: 352 PASMGVALENLHLLSSQGAGVSWAILGGMRELGETSPHWHREILGKLRGVDGAVLVGEEW 411

Query: 419 NP-RSEDPEKIR 429
            P RS+ P+++R
Sbjct: 412 APLRSDLPDQVR 423


>gi|82703368|ref|YP_412934.1| cyanophycin synthetase [Nitrosospira multiformis ATCC 25196]
 gi|82411433|gb|ABB75542.1| Cyanophycin synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 856

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 122/303 (40%), Gaps = 38/303 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTGT+GK++    +  I    GL   ++G TST   + +  R+ T        A   
Sbjct: 471 VVAVTGTNGKTTTVRMIANILDCQGL---RVGMTSTDGVYIEGQRIDTGDCSGPKSARKV 527

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI--DYHQTQQAYFNAKMRL 233
           L    V    +E +  GL +  L   +      TN+G  DH+   Y  T +     K  +
Sbjct: 528 LLHPDVDAAVLETARGGLLREGLAFDRCDVAVVTNIGVGDHLGLSYINTVEDLTAVKRII 587

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--- 290
            + + P    A++ A D +   +   AH  G     V +  +      V A H  Q+   
Sbjct: 588 VQNVKPGTGVAVLNAADPFVAGMA--AHCPG----KVTFFARDPD-NPVIAKHRAQRKRV 640

Query: 291 ------VTISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGIDSALVLEH 335
                   ++ EG +F++  P  G          FQ+ NA+ A     A+G+D  ++   
Sbjct: 641 VYVEDDAIVAAEG-NFEYRLPFAGIPVTQNGAIAFQIENAMAAIAAGWAVGLDWQIIRGG 699

Query: 336 LEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           L      +   PGRF F     RG  +  DY H  +++  ++  I  I + R  VV    
Sbjct: 700 LANFVSDMQTAPGRFNFF--THRGATLIADYGHNVDAIRALVSAIDKIPAKRRSVVISGA 757

Query: 392 GDR 394
           GDR
Sbjct: 758 GDR 760


>gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 455

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 146/371 (39%), Gaps = 36/371 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ I  V  DSR      +F+ + G + DGH F+  A+A GAEA +    +        
Sbjct: 20  EDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHE------G 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + ++ P++ V++    L   A    GK    ++ +TG++GK++    V  +  +     F
Sbjct: 73  MPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSK----RF 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +  T   ++F  +N +  P  I     L    S  +  + +     G   H  + ++  
Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +G  HI++  T+    +AKM + + L  KE    IY  D    E  +RA     
Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G++ +          +     T  V G    F  P+ G+  V NAL A  +    
Sbjct: 236 EKSTFGFREEDTVFATTFRSY-MHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITSGR 383
           G +   + + L        R ++     +G  G   +D  + SN        +R +T+  
Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VRAVTTSF 345

Query: 384 IIVVFGCGGDR 394
             V+   GG R
Sbjct: 346 GQVMVEDGGRR 356


>gi|78356090|ref|YP_387539.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|109892703|sp|Q313Q2|MURC_DESDG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78218495|gb|ABB37844.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 454

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 113/277 (40%), Gaps = 32/277 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++  QQA   A +  F   +P     ++  DDA  + ++ +       VL+
Sbjct: 179 TNVDLDHVDFYHDQQAIDTAFIN-FMNKVPFYGMNVVCGDDAGVRRLLPQIKRP---VLT 234

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G+        +        +  + + G+D  +     PG   V NAL A G+ +  GI 
Sbjct: 235 YGFGPDNQLRAETVTCGETSRFRVLLHGEDLGEVNLVQPGRHNVLNALAAIGVGLETGIA 294

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + L  L     V  RFE  G   RGG + V DY H    +   L   RT   GR +VV
Sbjct: 295 ADVCLRGLANFRGVGRRFERKG--ERGGVLVVDDYGHHPAEIAATLATARTCYPGRRLVV 352

Query: 388 FGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGN 444
                 R    + + G    A D  D  ++T+  P SE P       I G+ G  + +G 
Sbjct: 353 -AFQPHRFSRTKALFGDFCKAFDNVDKLLLTEIYPASEAP-------IPGVSGQSLAQGI 404

Query: 445 R------------IEAIRTAI-EMLNKQDVLVVAGKG 468
           R             +A+R A+ E L   D+ +  G G
Sbjct: 405 RQVSNTDVDYFQDFDAMRAALPETLRPGDLFLTLGAG 441


>gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 458

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 133/325 (40%), Gaps = 44/325 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R +  G +F+A+ G   DGH F  +A   GA A++VS    L           P 
Sbjct: 27  VTTDTRKLTPGCLFIALQGESFDGHDFAARACEAGAAALLVSRRLPL---------GVPQ 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +TR  L   A+ +  + P  ++A+TG+SGK+SV      I  + G   +  G    
Sbjct: 78  LLVADTRLALGQLAAWVRSQVPARVVALTGSSGKTSVKEMSAAILAQCGNVLYTAGNL-- 135

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                 +N +  P  +   +     +    G  HV   A S  L +         +    
Sbjct: 136 ------NNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH-------SALVN 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAY-----SKEVMKRAH 261
           NL   H++   +      AK  +F   LP +  AII AD    D +     ++ V + + 
Sbjct: 183 NLAAAHLEGFGSLAGVARAKGEIFSG-LPAQGTAIINADSNDWDNWQQALPTQRVWRFSP 241

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            AG         G   +  +V +  +     +     +     PLPG   + NAL AA L
Sbjct: 242 QAG--------SGVDFYASEVRSEVDGTHFVLHTPTGEIAVTLPLPGRHNIANALAAAAL 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346
            +++G     V + L  LH VPGR 
Sbjct: 294 TMSVGASLTQVRQGLAGLHAVPGRL 318


>gi|284044723|ref|YP_003395063.1| hypothetical protein Cwoe_3270 [Conexibacter woesei DSM 14684]
 gi|283948944|gb|ADB51688.1| domain of unknown function DUF1727 [Conexibacter woesei DSM 14684]
          Length = 458

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 118/295 (40%), Gaps = 61/295 (20%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            ASRL    PE  +A++ T+GK++ A+ V  + +R G        T  + + A  N    
Sbjct: 47  LASRL----PEGSVAISATNGKTTTAAMVASVLERRG--------TPLVHNRAGANMAGG 94

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH---- 220
            +   L  A        +    V+    G    +L   KL+ G   NL RD +D +    
Sbjct: 95  IASTLLGAAQGKGIDGRLGLFEVDEFWLGGLVEQLRPRKLLLG---NLFRDQLDRYGELE 151

Query: 221 --------------QTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNA 263
                          + Q   NA   L  +L  +E P ++Y    DD  +   M+ A ++
Sbjct: 152 TIADRWAEIVARHGSSTQLVLNADDPLVADL-GREQPRVVYFGVQDDTMALPQMQHASDS 210

Query: 264 G-CRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFL--------------- 303
             CR     Y+   I+L  +    C    +++   +V G+  +                 
Sbjct: 211 KHCRRCGHAYEYDAIYLGHLGRYHCPNCGQRRPEPAVVGERIELRGTRGARFTLRTPEGS 270

Query: 304 ----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                PLPG + VYNAL AA LC+++G+  A V+  LE++    GR E +  + R
Sbjct: 271 ARVELPLPGLYNVYNALGAAALCLSLGVPLAEVVSGLEQVAAAFGRAETIALDGR 325


>gi|49185423|ref|YP_028675.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
 gi|65319895|ref|ZP_00392854.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
 gi|227814595|ref|YP_002814604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacillus anthracis str. CDC 684]
 gi|254685159|ref|ZP_05149019.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254737610|ref|ZP_05195313.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743209|ref|ZP_05200894.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254751925|ref|ZP_05203962.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254760445|ref|ZP_05212469.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|49179350|gb|AAT54726.1| Mur ligase family, catalytic domain, C-terminal [Bacillus anthracis
           str. Sterne]
 gi|227006794|gb|ACP16537.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacillus anthracis str. CDC 684]
          Length = 99

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-----AIRTAIEML 456
           MG IA   +D   +T DNPRSEDP+ I  +I  G         ++E     AI  AI M 
Sbjct: 1   MGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMA 60

Query: 457 NKQDVLVVAGKGHETVHIVTN 477
           +  D++++AGKGHET  I+ +
Sbjct: 61  SSNDIVLIAGKGHETYQILKD 81


>gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
 gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
          Length = 427

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 148/361 (40%), Gaps = 32/361 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +FVA+ G + DGH F   A         V++       S  +    P LVV
Sbjct: 4   DTRKVTPGCLFVALKGERFDGHDFAEDA---------VAAGAGALLVSKRLLVGGPQLVV 54

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G      +
Sbjct: 55  KDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAG------N 108

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F  D  +    P+ L   L          + + A+  G   +  D  +  +    NL   
Sbjct: 109 FNNDIGV----PLTL---LRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAA 161

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H++   +      AK  +F   LP +  AII AD        +  H+   RV      G 
Sbjct: 162 HLEGFGSLAGVAQAKGEIFAG-LPAKGTAIINADSNDWPHWQETLHHK--RVWRFAPHGA 218

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    +    QVT       F  +    PLPG   + NAL AA L +++G   A V
Sbjct: 219 EDIDFFASDVRIASQVTYFTLHSPFGTVAIELPLPGRHNIANALAAAALAMSVGASLAAV 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGC 390
            E L +L  VPGR   +      G++ +D ++ +N  S+    + +  +   R++VV   
Sbjct: 279 REGLTQLQAVPGRLFPI--ELAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDM 336

Query: 391 G 391
           G
Sbjct: 337 G 337


>gi|117924035|ref|YP_864652.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
 gi|117607791|gb|ABK43246.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
          Length = 466

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 25/281 (8%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSP 167
           L G+HP   +  TGT GK++ +S + ++ + +G    F IG     + F + +R     P
Sbjct: 101 LEGRHP---IVATGTHGKTTTSSMLARLWEEAGWEPGFLIG--GIPADFGRGSRFPK-GP 154

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + +   Y         +          +R   + L      NL  DH D +   +A  
Sbjct: 155 WVVVEGDEY-------DTAFYDKRPKFLHYRPRTLIL-----NNLEFDHADIYADLEA-I 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             + RL    +P+    +I  DD   +EV K A  A   VL  G  G + +  ++     
Sbjct: 202 RVQFRLLLRTVPRSGVVLINGDD---EEVTKLAEYACSPVLYYGIHGDYHYRARLNQKDG 258

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                I  E + FD  +   G   +YN L AA   +  G+ + +V   LE    V  R +
Sbjct: 259 SHWTLIKEEQELFDVAWGQVGMHNIYNGLAAASAALEHGMPAHVVKAGLEGFSGVARRLQ 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
            V     G  +Y D+AH   +++  L+ +R  +   RI  +
Sbjct: 319 -VRAQLGGVTLYDDFAHHPTAIKTTLEGLRAKVGQARIWAI 358


>gi|312132521|ref|YP_003999860.1| mure1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773455|gb|ADQ02943.1| MurE1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 517

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 189/468 (40%), Gaps = 64/468 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A V  + YS         + TP L+V++ RK +SL ++  YG +P+N L V G +G 
Sbjct: 75  GLAAYVAETEYSAA-------TATPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126

Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175
                 + F Q +     +++   G  +  SS           ++ LTTP  +   + + 
Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
             +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K   
Sbjct: 182 EAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCK--- 238

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQ 290
             +++      ++ AD  ++  + + A  AG  V +               V    + + 
Sbjct: 239 -RQIIANAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPEH 297

Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGR 345
            +  +   D    D+   + G+F   NA  A  +  A G+  D A  L  +E + +  GR
Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIA-GR 356

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402
            E            VDYAH   S+  +L  +       + RI +V G  G++   +R  +
Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416

Query: 403 GKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAI 453
            + A + +A+     +D     D E    +I   + G+I           +R  AI  AI
Sbjct: 417 VEAAENRIANFIFTAEDT----DTEPF-IDICMEMQGYITNKDVASTVISDRPTAITNAI 471

Query: 454 ----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495
                  ++ ++L++ GKG+E    + +  K +  D D  ++  + GL
Sbjct: 472 YDARAHADRFNILLIIGKGNE--RWIKDHHKHVPFDGDDHVVERMFGL 517


>gi|242242465|ref|ZP_04796910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
 gi|242234039|gb|EES36351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
          Length = 454

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 146/347 (42%), Gaps = 62/347 (17%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115
           + G E I  S  +SL D +  I  N  I     ++ +  ++ L +      S L  + P 
Sbjct: 59  SMGIEVISGSHPFSLLDDNPIIVKNPGIPYTVSIIEEAAKRGLKILTEVELSYLISEAP- 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174
            I+AVTGT+GK++V S +  + Q+S L+    G    ++S  AQ+ +    S  YL   L
Sbjct: 118 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVK----SDEYLITEL 172

Query: 175 SYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           S     G+     H+++                      TN+   H+DYH+T + Y NAK
Sbjct: 173 SSFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHETLENYQNAK 211

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNK 288
            ++++     +     Y    Y +  +  + N   +      Q +   I++K    + N 
Sbjct: 212 KQIYKNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNG 266

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++   +  KD      LPGE  + N L A    I  G+    +++ L     +  R ++
Sbjct: 267 IRI---INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQY 319

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           +GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 320 IGTN-RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 360


>gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555]
 gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555]
          Length = 463

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 152/379 (40%), Gaps = 55/379 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR +Q G IF+A+ G K +G+ ++  A  +GA   +V     ++  S  I   T I
Sbjct: 29  ISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKGASICIVD---EVKFESEKISEFTTI 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSSF 145
           + V N    L   A     K    I+ VTG+ GK++    +        ++ +  G  + 
Sbjct: 86  IKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTKDIIAAVLGVKFKVFKTEGNFNN 145

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           QIG    +  F  DN        Y    L   ++ +G  H  V+A+   +          
Sbjct: 146 QIGLPHML--FKLDNS-------YEVAVLEMGMNQRGEIHNMVKAARPDI---------- 186

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR----- 259
                TN+ R HI    +++   NAK+ +  +   KE+  II +D+     + ++     
Sbjct: 187 --AVITNVLRAHIGNLGSRKNILNAKLEI-TDFFSKENTLIINSDNDLLSTLEEKNFTLN 243

Query: 260 ----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                 N+      +  +   I   KVC  + K +           FL  +PG++ + N+
Sbjct: 244 RVGLGENSDVSAYDIVVEEDCIEF-KVCKNNVKTEER---------FLINMPGKYNIVNS 293

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L+A      + +    + E ++ + +   R E +    +   I  D Y     S++  + 
Sbjct: 294 LLAISCGRLLNMSYDEIREGVKNIKLTSMRMEII--RKKEFTIINDCYNANPESMKAAID 351

Query: 375 NIRTITSGRIIVVFGCGGD 393
            ++   S R I V G  G+
Sbjct: 352 VLKEFKSNRKIAVLGTMGE 370


>gi|187479352|ref|YP_787377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           avium 197N]
 gi|118595642|sp|Q2KVF5|MURD_BORA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115423939|emb|CAJ50491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bordetella avium
           197N]
          Length = 508

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 21/139 (15%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R   SL  +R Y  HP  +LAVTGT+GK++V +  +Q+ +  GLS+   G         
Sbjct: 117 ARALASLAEARAY--HP-RLLAVTGTNGKTTVTALTRQLIEACGLSARAAGNI------- 166

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                   SP  LA  +  L    +  V V E SS  L+      ++  A    N+ +DH
Sbjct: 167 --------SPAALASLMEALDQDALPDVWVLELSSFQLETTH--SLQADAAVVLNVTQDH 216

Query: 217 IDYHQTQQAYFNAKMRLFE 235
           +D+H   QAY  AK RL +
Sbjct: 217 LDWHGDMQAYAQAKARLLK 235


>gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 457

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 158/365 (43%), Gaps = 39/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSRH+    +F A+ G K DG+LF P+A ++ A A+VVS      D S        +
Sbjct: 30  VCTDSRHLPPHAVFFALGGEKFDGNLFAPEA-SRTAAAVVVSRVEEGMDPSCA------V 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++T + L   AS    +    ++ +TG++GK+S       +  +        G  + 
Sbjct: 83  ILVEDTLEALQKLASWWRSELTLTVIGLTGSNGKTSTKDLTASVLSQ--------GFRTI 134

Query: 153 ISSFAQDNRLTTPSPIYLAKAL--SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            +    +N +  P  I  A     + +   G+ H    A    + + ++       G  T
Sbjct: 135 ATQGNLNNHIGVPLSILRATPSDEAAVWEMGMNHSGELAPLCEMTRPKI-------GIIT 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           ++G  H++Y  +++     K  L    LP++   I  AD  Y+ ++++++  A C  +  
Sbjct: 188 SIGTSHMEYLGSRENIAREKCTL-ARCLPEDGFMIFPADCDYA-DMIRQSTRAAC--IDC 243

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           G     +  +   +  N  +  +S+   DF   +   P+ G   V NAL+AA    A G+
Sbjct: 244 GIGAGTVRAENPVSTENGTRFILSI--PDFCREEVELPVHGRHMVTNALLAAAAGWAAGL 301

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT-SGRI 384
               +   L +  +  GR      N   G + VD  + +N  S++  L  +  ++ +GR 
Sbjct: 302 AKEQIASGLNQARLTGGRLHCTRIN---GILVVDDTYNANPDSMQAALHTVAGLSCTGRR 358

Query: 385 IVVFG 389
             V G
Sbjct: 359 FAVLG 363


>gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 449

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 150/382 (39%), Gaps = 67/382 (17%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  V  DSR I+   +FV + G + DGH F  QA   GA A + S          TI
Sbjct: 19  ETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHP--------TI 69

Query: 87  RSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QIC 137
           +    ILV  V +T K     A     K    I+A+TG++GK++    V        Q  
Sbjct: 70  QPPQGILVIPVKDTVKAFQQLARAYKEKLAPKIIAITGSNGKTTTKDMVDAVMAQKYQTY 129

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV-SVEASSHGLDQ 196
           +  G  + ++G   TI    +D ++              +   G+ H   +E  S   + 
Sbjct: 130 KTQGNHNNELGVPLTILHAPEDTQV-------------LILEMGMDHAGEIEVLSRLAEP 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYAD 249
                    A + T +G  HI+   +++    AKM +   L       +P + P +    
Sbjct: 177 D--------AAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMIPVDEPLL---- 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D +   + +     G   L+ G  QG  +         ++ Q   +V G  F    P+ G
Sbjct: 225 DPFVPNLTQTIETFG---LTEGDLQGDIVE-------ESQDQTIFTVAGTTFT--LPVLG 272

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
            + V NAL+A GL    G+ +  + E L    +   R ++V T   G  I  D Y     
Sbjct: 273 GYNVKNALIAIGLGRHFGVSNEAIKEGLAHFQLTKNRTQWV-TAGNGAAILSDIYNANPT 331

Query: 368 SLEMILKNIRTIT-SGRIIVVF 388
           ++ ++L + R +   GR I V 
Sbjct: 332 AMGLVLDSFRKLPLEGRRIAVL 353


>gi|217967632|ref|YP_002353138.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
 gi|254766000|sp|B8E324|MURC_DICTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217336731|gb|ACK42524.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
          Length = 464

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 121/281 (43%), Gaps = 35/281 (12%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+DY+++ +   +  +++ E++ PK   A++  D    ++++++  N      
Sbjct: 177 ITNIDNDHLDYYKSLEKIKDTFLKVIEKV-PKGGFAVLNLDCENVRDIIRKIKNK--EYY 233

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVA 318
           + G+           A      + +++ G +FD  F           +PG+  + N+L A
Sbjct: 234 TYGFSN---------ADFKADNIVLNLSGSEFDVYFRNEKLGRVKLRVPGKHNILNSLSA 284

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G+D     + LE+   V  R +  G       ++ DY H    ++  L+ +R 
Sbjct: 285 IAVSKILGLDFETTTKALERFQGVQRRIQLKGIIEDDILVFDDYGHHPTEIKATLETLR- 343

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP------EKIRA 430
           + + R++VVF     R      +  +I  AL L D+ I+T+     E P      + I  
Sbjct: 344 LYNRRLVVVFQP--HRYTRTYFLSKEIAEALSLGDVIILTEIYSAGEKPIPGVSSKNIYD 401

Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           EI    P        N IEA   A  +L K D+L+  G G+
Sbjct: 402 EIREKYPNLEVYLVDNIIEAASKAKSILKKGDLLLTLGAGN 442


>gi|291616270|ref|YP_003519012.1| MurD [Pantoea ananatis LMG 20103]
 gi|291151300|gb|ADD75884.1| MurD [Pantoea ananatis LMG 20103]
          Length = 438

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 46/283 (16%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A  + L  P+ +Y+     
Sbjct: 106 SIVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGLPAL-SLLKAPAQLYV----- 156

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
                      +E SS  L+      +K  A +  N+  DH+D Y    Q Y  AK+R++
Sbjct: 157 -----------LELSSFQLETTH--SLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIY 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         ++ ADD  +  V      A  R +S G      HL       NKQQ +I 
Sbjct: 204 E----NAQVCVVNADDGMTMPV----RGADARCVSFGIDIGDYHL-------NKQQGSIW 248

Query: 295 VEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  K    L      L G+    NAL A  L  A+G+  +  L  L     +P RF+ V 
Sbjct: 249 LRAKGEKVLNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGLPHRFQLV- 307

Query: 351 TNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGG 392
             SRG R   D   T+  S E  LK ++   +G + ++ G  G
Sbjct: 308 HQSRGVRWINDSKATNVGSTEAALKGLQ--VNGTLWLLLGGDG 348


>gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
          Length = 454

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 156/376 (41%), Gaps = 50/376 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  + ++  DSR I+ G +F+ + G + DGH FI  A   GA A           FS
Sbjct: 20  EFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P ++VD+  +     AS    K   +++AVTG++GK++    +  +       
Sbjct: 69  ERKVEGHPYILVDDCLQAFQELASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------ 122

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
           S +     T  ++  +N +  P   Y A  +   + + V  +      H  D H L  + 
Sbjct: 123 STEYKTYKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELA 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257
           K   G  T +G  H+++  ++      K+++ + +   +S  I+ A      D Y  E  
Sbjct: 175 KPHIGVVTLIGEAHLEFFGSRDKIAKGKLQIVDGM---DSDGILIAPADSIVDPYLPE-- 229

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                 G  V+  G  G  I +  +    +K  +T +    +     P+PG++   NA+V
Sbjct: 230 ------GQMVIRFG-DGAEISVNDLQ--ESKDSLTFTTNVINRPITLPVPGKYNATNAMV 280

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA +   + I    ++E LE + +   R E+    + G  I  D Y     ++ +IL+  
Sbjct: 281 AAYVGKLLAISDDDIVEALENIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETF 339

Query: 377 RTI---TSGRIIVVFG 389
             I   + G+ I V  
Sbjct: 340 SKIPANSGGKKIAVLA 355


>gi|57866690|ref|YP_188331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis RP62A]
 gi|62900660|sp|Q5HQ09|MURD_STAEQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|57637348|gb|AAW54136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis RP62A]
          Length = 449

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 146/347 (42%), Gaps = 62/347 (17%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115
           + G E I  S  +SL D +  I  N  I     ++ +  ++ L +      S L  + P 
Sbjct: 54  SMGIEVISGSHPFSLLDDNPIIVKNPGIPYTVSIIEEAAKRGLKILTEVELSYLISEAP- 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174
            I+AVTGT+GK++V S +  + Q+S L+    G    ++S  AQ+ +    S  YL   L
Sbjct: 113 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVK----SDEYLITEL 167

Query: 175 SYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           S     G+     H+++                      TN+   H+DYH+T + Y NAK
Sbjct: 168 SSFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHETLENYQNAK 206

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNK 288
            ++++     +     Y    Y +  +  + N   +      Q +   I++K    + N 
Sbjct: 207 KQIYKNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNG 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++   +  KD      LPGE  + N L A    I  G+    +++ L     +  R ++
Sbjct: 262 IRI---INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQY 314

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           +GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 315 IGTN-RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355


>gi|253731802|ref|ZP_04865967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724452|gb|EES93181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 449

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    I+   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIIYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
 gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 37/337 (10%)

Query: 27  ERKINE----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ +NE    VS D+R I  G +++ I G++ DGH F+ +AI  GA A +     ++Q+ 
Sbjct: 20  EKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKK--NVQNP 77

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 N P++ V++T + L   A     +    ++ VTG++GK+S    V  +      
Sbjct: 78  PV----NIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA---- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + F++  T    +F  +N +  P  I     LS   +  +  + +  SS G  +      
Sbjct: 130 TKFKVQKTE--GNF--NNHIGLPLTI-----LSLEENTEMAVLEMGMSSRGEIEFLSKLA 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A   TN+G  H+    ++ A   AK+ +   L  ++    +Y  D         + N
Sbjct: 181 RPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL--QDGGVFVYNGDEPLLTNRVPSMN 238

Query: 263 AGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                ++ G      Y    + L+         Q       ++  F  P+ G+  VYN L
Sbjct: 239 LAAETITFGDARANNYYPTSVTLQATGTYFKMNQ------DENVVFYLPVLGKHNVYNTL 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +  +    G+    + + L  L +   R E V T +
Sbjct: 293 ASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTEN 329


>gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 454

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 149/355 (41%), Gaps = 42/355 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR ++ G +FVA+ G+  DGH +  +A+  GA  +VVS      + S         
Sbjct: 23  VTTDSRAVKPGELFVALKGDNFDGHDYCAKAVELGAAGVVVS-----HEVSGLPAGVAVF 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V D    +  L  +    K    + A+TG++GK+S    +      +   S +     T
Sbjct: 78  MVEDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTSTKDLL------AACLSCKYNVVKT 131

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA----G 207
             +F  +N +  P  +        LS +  T ++ VE    GL Q  +  +  IA    G
Sbjct: 132 QGNF--NNEIGLPKTL--------LSIKPDTDIAVVEMGMRGLGQ--IAELCRIAEPDSG 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H++   + +    AK  +    LP++  A++  D+ Y   V+  A     +V
Sbjct: 180 LITNVGETHMELLGSMENIGKAKSEIVLN-LPEDGFAVLNGDNEY---VLPAADKTKAKV 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +  G  G+    +    + +    T +      G+  +    L GE  VYNAL A     
Sbjct: 236 VYFGL-GENCDFRGSDIVTSGAGTTFTCTHKATGEAVNVSLQLIGEHNVYNALSAIAGAF 294

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
             G+  A+  + L    +   R E V     G   +++ A+ ++  S+E  LK +
Sbjct: 295 CYGVPMAVSAQALATARLTGSRQEIV---YIGDITFINDAYNASPASMEAALKTL 346


>gi|49486023|ref|YP_043244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208175|ref|ZP_06924605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|60390422|sp|Q6GA29|MURD_STAAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49244466|emb|CAG42894.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296886914|gb|EFH25817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|329728830|gb|EGG65251.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 449

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    I+   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIIYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|172057973|ref|YP_001814433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
 gi|171990494|gb|ACB61416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
          Length = 439

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   ++DSR I    +++ I G + DGH FI  A+AQGA A +      L +   T  
Sbjct: 19  RALRNFATDSRSILTEGLYIPIQGARVDGHTFIEGAVAQGAIATLWKKGIPLPEMDIT-- 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
               +L V++  + L + A R   +    ++A+TG++GK+S    ++ + ++S
Sbjct: 77  ----VLEVEDPLQALQIIAKRYLQQVAPKVIAITGSNGKTSTKDMIESVLKQS 125


>gi|21282795|ref|NP_645883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300912253|ref|ZP_07129696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|30316062|sp|Q8NX35|MURD_STAAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21204233|dbj|BAB94931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|300886499|gb|EFK81701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 449

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    I+   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIIYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
          Length = 475

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 133/321 (41%), Gaps = 20/321 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+ + + V+ D+R +Q G +FVA+ G + DGH ++ QA+  GA A +VS         A 
Sbjct: 22  RDWQASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQALQTGASAALVSR------RPAD 75

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + ++ P+L+V +    L+        +    I AVTG+ GK+     +       G    
Sbjct: 76  LAASAPLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGKTGSKEMLAAALAAYG---- 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
               T+  S    +N +   +P+ LA+  S  ++  V  + +          RL  ++  
Sbjct: 132 ----TTHASKGNLNNHIG--APLSLAR-FSRDAAFAVFELGMNHPEEIRPLSRL--VRPH 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A   TN+   H  +    +   +AK  +F+ L P  +  +   +  + +        A  
Sbjct: 183 AALITNVEMVHAGFFAGIEQIADAKAEIFDGLEPGGTVVLNRDNSQFGRLAGHAGRLAIE 242

Query: 266 RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           R++  G        L    + H   +V   + G+   +     G     N+L  A   +A
Sbjct: 243 RIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRHWAINSLGVAATLLA 302

Query: 325 IGIDSALVLEHLEKLHVVPGR 345
           +G+D A+ +  L ++  + GR
Sbjct: 303 LGLDPAIGMAALGRVTAMRGR 323


>gi|260905306|ref|ZP_05913628.1| UDP-N-acetylmuramate/alanine ligase [Brevibacterium linens BL2]
          Length = 466

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 143/359 (39%), Gaps = 46/359 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            S+ IR + P LV    R    L      AS + GK     +AV GT GK++  S     
Sbjct: 77  ISSAIRKDNPELVEAERRGLRILHRSGALASLMAGK---RAVAVAGTHGKTTTTSMTTVA 133

Query: 137 CQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            Q  GL  SF IG    +S+   +  L T   +++A+A                     D
Sbjct: 134 LQACGLDPSFVIG--GVLSTTGTNAHLGT-GDVFVAEA---------------------D 169

Query: 196 QHRLDGIKLI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           +   DG  L+     G  TN+  DH+DY+ T +    A +     +       I  ADD 
Sbjct: 170 ES--DGSFLLYEPTIGILTNVEADHLDYYGTPEKVREAFVEFCAGIGADGGTVIACADDP 227

Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGE 309
            S +V ++A   G  V+  G  +   + L+++   + ++  + +  + +        PG 
Sbjct: 228 GSLDVAQQARAQGTSVILYGTSESADVRLRELQSGLVSEFVLDVPGQAEPLPVALRQPGT 287

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NA  A  +  ++G D A     L        RFE  G  + G R+  DYAH    L
Sbjct: 288 HNALNATAAIAVAHSLGADVAKAASGLGGYGGTRRRFEERGIAA-GVRVIDDYAHHPTEL 346

Query: 370 EMILKNIRTITS--GRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +L   R + +  GR+  +F      R    R   G+ AL LAD  +V D  P  EDP
Sbjct: 347 RAVLSAARGVVTDEGRVWAIFQPHLYSRTMEFRTEFGE-ALGLADEVVVLDVFPAREDP 404


>gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 428

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 147/354 (41%), Gaps = 69/354 (19%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +I  V  DSR +Q G +F AI     +G+ +I   + +GA A+V++  Y   D    
Sbjct: 19  EKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA-ALVIADNYKGND---- 69

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 ++ V++T K +   A +        ++A+TG++GK++    +  +  +  +++ 
Sbjct: 70  ----KRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTTTKDMIYSVLSQKYVTAK 125

Query: 146 QIGPTSTISSFAQDNRLTTPSPIY-----LAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            +G          +N +  P  I         A+  L   G   + + +S    D     
Sbjct: 126 TMGNL--------NNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSSIVEPD----- 172

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                 G  TN+G  H+++ +T++  F AK  L + +  +    I++ DD + K++    
Sbjct: 173 -----IGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAEN--LIVFGDDPFLKDL---- 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFD-----FLFPLPGEFQV 312
                  + VGY+            +N  Q+   T S EG  F+     +   L G+   
Sbjct: 222 -----NGIKVGYEN-----------NNNYQIKNFTDSDEGLSFEMEEKKYTVSLNGKHNC 265

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            N  +A  +   +G+    +   L+ L + P RF+ +    +   IY++ A+ +
Sbjct: 266 INTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKI---EKENIIYINDAYNA 316


>gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
          Length = 455

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 147/371 (39%), Gaps = 36/371 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ I  V  DSR      +F+ + G + DGH F+  A+A GAEA +    +        
Sbjct: 20  EDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHE------G 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + ++ P++ V++    L   A    GK    ++ +TG++GK++    V  +  +     F
Sbjct: 73  MPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSK----RF 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +  T   ++F  +N +  P  I     L    S  +  + +     G   H  + ++  
Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +G  HI++  T+    +AKM + + L  KE    IY  D    E  +RA     
Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G++ +          +     T  V G    F  P+ G+  V NAL A  +    
Sbjct: 236 EKSTFGFREEDTVFATTFRSY-MHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITSGR 383
           G +   + + L        R ++     +G  G   +D  + SN +      ++ +T+  
Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPIA-----VKAVTTSF 345

Query: 384 IIVVFGCGGDR 394
             V+   GG R
Sbjct: 346 GQVMVEDGGRR 356


>gi|23502304|ref|NP_698431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           1330]
 gi|148559574|ref|YP_001259326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ovis
           ATCC 25840]
 gi|161619381|ref|YP_001593268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           canis ATCC 23365]
 gi|225852915|ref|YP_002733148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis ATCC 23457]
 gi|254694117|ref|ZP_05155945.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 3 str. Tulya]
 gi|254702154|ref|ZP_05163982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 5 str. 513]
 gi|254704691|ref|ZP_05166519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 3 str. 686]
 gi|256061490|ref|ZP_05451634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           neotomae 5K33]
 gi|256113986|ref|ZP_05454769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263604|ref|ZP_05466136.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260566062|ref|ZP_05836532.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|261214417|ref|ZP_05928698.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261325497|ref|ZP_05964694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261752724|ref|ZP_05996433.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261755384|ref|ZP_05999093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|265995328|ref|ZP_06107885.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|30316052|sp|Q8FZP2|MURD_BRUSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23348281|gb|AAN30346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis
           1330]
 gi|148370831|gb|ABQ60810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ovis ATCC
           25840]
 gi|161336192|gb|ABX62497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella canis
           ATCC 23365]
 gi|225641280|gb|ACO01194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis ATCC 23457]
 gi|260155580|gb|EEW90660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|260916024|gb|EEX82885.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261301477|gb|EEY04974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261742477|gb|EEY30403.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261745137|gb|EEY33063.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|262766441|gb|EEZ12230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263093655|gb|EEZ17660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|326409457|gb|ADZ66522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis M28]
 gi|326539163|gb|ADZ87378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis M5-90]
          Length = 467

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
 gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 448

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 147/354 (41%), Gaps = 69/354 (19%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +I  V  DSR +Q G +F AI     +G+ +I   + +GA A+V++  Y   D    
Sbjct: 39  EKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA-ALVIADNYKGND---- 89

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 ++ V++T K +   A +        ++A+TG++GK++    +  +  +  +++ 
Sbjct: 90  ----KRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTTTKDMIYSVLSQKYVTAK 145

Query: 146 QIGPTSTISSFAQDNRLTTPSPIY-----LAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            +G          +N +  P  I         A+  L   G   + + +S    D     
Sbjct: 146 TMGNL--------NNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSSIVEPD----- 192

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                 G  TN+G  H+++ +T++  F AK  L + +  +    I++ DD + K++    
Sbjct: 193 -----IGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAEN--LIVFGDDPFLKDL---- 241

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFD-----FLFPLPGEFQV 312
                  + VGY+            +N  Q+   T S EG  F+     +   L G+   
Sbjct: 242 -----NGIKVGYEN-----------NNNYQIKNFTDSDEGLSFEMEEKKYTVSLNGKHNC 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            N  +A  +   +G+    +   L+ L + P RF+ +    +   IY++ A+ +
Sbjct: 286 INTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKI---EKENIIYINDAYNA 336


>gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
 gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
          Length = 472

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +DSR IQ G +FV IVG K DGH F    +A GA A     A+  +D       +
Sbjct: 27  IQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESVLASGAGA-----AFWQRDHQPV--PD 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            P+++V++T   L   A+    +    ++ +TG++GK++V   V  + + +
Sbjct: 80  LPLILVEDTLTALQSLAAAYLSETSAKVVGITGSNGKTTVKDMVSALLETT 130


>gi|294852759|ref|ZP_06793432.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
 gi|294821348|gb|EFG38347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
          Length = 467

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
          Length = 455

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 41/301 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V+ DSR +    +FV + G + DGH FI  AIA GA A +    +  +        N
Sbjct: 24  ISSVAFDSRKLNENSLFVPLKGER-DGHDFINSAIANGAVATLWEKGHPNK------PGN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ VD+T   +   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  FPLIEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDG-IKL 204
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L   +K 
Sbjct: 133 TQ--ANF--NNEIGVP--------MTILEMKPTTEILV--LEMGMDRAGQLHHLSSLVKP 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +G  HI++  ++    +AKM + + L  KE    IY  D     + +RA    
Sbjct: 179 DVCVITMIGEAHIEFFGSRDKIADAKMEITDFL--KEDGEFIYNGD--EPLLRQRAEKIT 234

Query: 265 CRVLSVGYQGK-FIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               + G+  +  IH L+    +H+   VT S E K   F  P+ G+  V NA+  A +C
Sbjct: 235 QVKSTFGFSDQDTIHALEFKSYMHHASFVTNSSEQK---FSIPMIGKHNVSNAM--AAIC 289

Query: 323 I 323
           +
Sbjct: 290 V 290


>gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
 gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 478

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/348 (20%), Positives = 138/348 (39%), Gaps = 47/348 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I  G IFVA+ G + DGH F+ QA  +GA   +VS  +  +  S+   +    LV 
Sbjct: 41  DSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIVSREWFSRQGSSAHEAGARYLVT 100

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +T + +   A+    K    ++ + G++GK++       + +    + + +     +S 
Sbjct: 101 ADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMTASVLR----ARYSV----HMSE 152

Query: 156 FAQDNRLTTPSPIYLAKALSYLS--SQGVTH-------VSVEASSHGLDQHRLDGIKLIA 206
              +N L  P  ++  +    ++    G+ H         + A +HG+            
Sbjct: 153 GNFNNHLGVPLTLFGLREKHEVAVVEMGINHPGEMELLAEIAAPTHGM------------ 200

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----- 261
              TN+G +H+++ +      NA+  L+  +  ++S  +++ +   S+     A      
Sbjct: 201 --LTNIGHEHLEFLRDLDGVANAETALYRYV--QKSGGVVFVNREDSRLTEAAAGIPSTV 256

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G  +   G+  + I +  +     +   T+     +        G   V NA+ AA +
Sbjct: 257 GYGIALEGEGFWAEDIRMDNL----GRALFTLCSSAGNAPVTLGFAGRHNVSNAVAAATV 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSN 367
               G+    +   LE+L    G  R EF      GG   V+  + +N
Sbjct: 313 GFHFGLTQEEIAGGLERLKPEEGWKRLEF---QRAGGITIVNDTYNAN 357


>gi|254719464|ref|ZP_05181275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           83/13]
 gi|265984470|ref|ZP_06097205.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306839243|ref|ZP_07472060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
 gi|264663062|gb|EEZ33323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306405790|gb|EFM62052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
          Length = 467

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGVDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWSQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|194288895|ref|YP_002004802.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193222730|emb|CAQ68733.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 856

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 126/312 (40%), Gaps = 35/312 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA    G+ P  ++AV+GT+GK++    +  I   SGL   ++G T T   + Q  R+
Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHIMATSGL---RMGMTGTDGVYIQGERI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219
            T        A + L    V     E +  GL +  L   +      TN+G  DH+   Y
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSY 574

Query: 220 HQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271
             + +     K  + + + P          P ++   DA    V   AH+     ++   
Sbjct: 575 INSVEDLAVLKSVIVQNVAPHGMAVLNAADPMVVRMADACPGSVTFFAHDPDQPAMATHR 634

Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIA 324
            QGK   F+   ++ A     +V I++         PL       FQV NA+ +     A
Sbjct: 635 AQGKRVVFVDGAEIVAGEGDAEVRIALAE------IPLTRNGTIGFQVENAMSSIAAAWA 688

Query: 325 IGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +GID +++   L          PGRF     + RG  +  DY H  +++  +   I +I 
Sbjct: 689 LGIDWSVIRRGLATFVNDAQTAPGRFNVF--DYRGATLIADYGHNPDAILALCNAIESIP 746

Query: 381 SGRIIVVFGCGG 392
           + R +VV    G
Sbjct: 747 AKRRVVVISGAG 758


>gi|62290326|ref|YP_222119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700250|ref|YP_414824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis biovar Abortus 2308]
 gi|189024559|ref|YP_001935327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237815833|ref|ZP_04594830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|254689627|ref|ZP_05152881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 6 str. 870]
 gi|254697769|ref|ZP_05159597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730658|ref|ZP_05189236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 4 str. 292]
 gi|256257877|ref|ZP_05463413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 9 str. C68]
 gi|260546868|ref|ZP_05822607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260755155|ref|ZP_05867503.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758374|ref|ZP_05870722.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762200|ref|ZP_05874543.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884168|ref|ZP_05895782.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297248713|ref|ZP_06932431.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
 gi|75496533|sp|Q57C76|MURD_BRUAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595643|sp|Q2YM69|MURD_BRUA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62196458|gb|AAX74758.1| MurD, UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616351|emb|CAJ11408.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Pyridine
           nucleotide-disulphide oxidoreductase, class
           I:Folylpolyglutamate s [Brucella melitensis biovar
           Abortus 2308]
 gi|189020131|gb|ACD72853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237789131|gb|EEP63342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|260095918|gb|EEW79795.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260668692|gb|EEX55632.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672632|gb|EEX59453.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675263|gb|EEX62084.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873696|gb|EEX80765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297175882|gb|EFH35229.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
          Length = 467

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|319401523|gb|EFV89733.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis FRI909]
          Length = 449

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 145/347 (41%), Gaps = 62/347 (17%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115
           + G E I  S  +SL D    I  N  I     ++ +  ++ L +      S L  + P 
Sbjct: 54  SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIEEAAKRGLKILTEVELSYLISEAP- 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174
            I+AVTGT+GK++V S +  + Q+S L+    G    ++S  AQ+ +    S  YL   L
Sbjct: 113 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVK----SDEYLITEL 167

Query: 175 SYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           S     G+     H+++                      TN+   H+DYH+T + Y NAK
Sbjct: 168 SSFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHETLENYQNAK 206

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNK 288
            ++++     +     Y    Y +  +  + N   +      Q +   I++K    + N 
Sbjct: 207 KQIYKNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNG 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++   +  KD      LPGE  + N L A    I  G+    +++ L     +  R ++
Sbjct: 262 IRI---INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQY 314

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           +GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 315 IGTN-RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355


>gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 466

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 32/215 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR+I+ G  FV ++GNK DGHLF+ +   +G +A  +S     +D +  I      
Sbjct: 30  VCTDSRNIKKGNFFVPLIGNKFDGHLFLEEVFEKGVQAAFIS-----KDCNLAIPEELLY 84

Query: 93  LVVDNTRKF---LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             VD+T++    L+    RL+      ++AVTG++GK++    +             + P
Sbjct: 85  WQVDDTQEAYQKLAFLHRRLFSIP---VVAVTGSAGKTTTRELIHS----------SLVP 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLDQ-HRLDGIKLI- 205
              + + + +N      P  L KA        V H  + +E +  GL Q  RL       
Sbjct: 132 LGEVLATSNNNNNDIGVPFTLLKA-------NVNHSAIVLEMAMRGLGQIERLSKCACPD 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               TN+G  HI    ++Q   +AK  +   + P 
Sbjct: 185 IAVITNIGSSHIGLLGSKQNIASAKCEIAAHMNPN 219


>gi|256160167|ref|ZP_05457861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M490/95/1]
 gi|256255373|ref|ZP_05460909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           B1/94]
 gi|261222575|ref|ZP_05936856.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|265998540|ref|ZP_06111097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
 gi|260921159|gb|EEX87812.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|262553164|gb|EEZ08998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
          Length = 467

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 160/400 (40%), Gaps = 80/400 (20%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ +  +S DSR ++   +FV IVG + D H F+ QAIA GA  +  S  +  +D  A +
Sbjct: 23  DQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQAIASGAAVVFTSEHHCGEDVKACV 82

Query: 87  RS-------------NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           R                  + V +T+K L    S         ++ +TG+ GK++    +
Sbjct: 83  RQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRKSLSLPLVGITGSVGKTTTREMI 142

Query: 134 QQ-------ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
            +       + +  G S+ Q+G   TI+   Q   +                  GV  + 
Sbjct: 143 AEALSAGFKVYKTPGNSNSQVGVPITIAEIPQSAEI------------------GVIELG 184

Query: 187 VEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +   S   +  R+  + ++     TN+G  HI+   +Q+     K+ + +E +P E    
Sbjct: 185 M---SEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEKLHI-QEGMPPEGILF 240

Query: 246 IYADDAYSKEVMKRAHNAGCRVL-----SVGYQGKFIHLKK----VCAIHNKQQVTISVE 296
           +  DD     V+ +      +VL        Y+ + +HL++      A+H   +V + ++
Sbjct: 241 LNGDDPLLASVVPKEGRK--KVLYGLGRDCDYRAEDLHLEEGYPVFTAVHGDCRVRVRLK 298

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-- 354
                    + G   V NA+ A  +    G+        +EK  +  G+F+  G   R  
Sbjct: 299 ---------VMGSHMVSNAMAALAVADTYGLS-------MEKAALALGQFK--GYKGRQQ 340

Query: 355 ----GGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVF 388
               GG   +D ++ ++ + M   L+ + ++   R I V 
Sbjct: 341 IFEWGGVTVIDDSYNASPVSMKAGLEVLDSVKGERKIAVL 380


>gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
          Length = 471

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 157/373 (42%), Gaps = 45/373 (12%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S DSR + AG +F A++G + DGH F+  A+  GA A VVS  + +   SA +     + 
Sbjct: 28  SIDSRTVGAGELFFAVMGERFDGHEFVKTALEAGAVAAVVSMRWVV---SAEVDPCKLLR 84

Query: 94  VVDNTRKFLSL---FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           V D     LS     A  +       ++ VTG++GK++    V  +      + F++   
Sbjct: 85  VPDGEDCVLSALQKLAREVRKSWGGRVIGVTGSAGKTTTKECVAAVLA----AKFKV--- 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              S+   +N    P  +   +    ++    G+ H    A+   + +            
Sbjct: 138 -LKSAGNLNNHFGVPLQLLRLEKEHQVAVIEMGMNHAGEIATLAKIAEPDW-------AV 189

Query: 209 FTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            +N+   H+++     +    AK  L +  LP    A + ADD +        H A    
Sbjct: 190 VSNVAAVHLEFFADGMEGIARAKKELVDA-LPAAGVAFLNADDVFVS-TFGEGHEARMFG 247

Query: 268 LSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFL---FPLPGEFQVYNALVAAGL 321
           LS     + + +K V  +   Q   QVT + EG+  D +     L GE  VYNAL A   
Sbjct: 248 LSETADVRGVEVKNV-GLEGMQFVVQVT-AREGRVADKMRARIALLGEHNVYNALAA--- 302

Query: 322 CIAIGIDSALVL-EHLEKL-HVVPG--RFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
            IA+G++S + L E +  L  VVP   R E +     G R+  D Y     +LE ++  +
Sbjct: 303 -IAVGLESGMTLGECVFALDSVVPSDKRGEMI--EWHGARLINDSYNSNPRALEAMVDAL 359

Query: 377 RTITSGRIIVVFG 389
             I  GR IV+ G
Sbjct: 360 MAIEGGRHIVIAG 372


>gi|225627884|ref|ZP_03785920.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|254708105|ref|ZP_05169933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M163/99/10]
 gi|254710474|ref|ZP_05172285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis B2/94]
 gi|254714467|ref|ZP_05176278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M644/93/1]
 gi|254717365|ref|ZP_05179176.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M13/05/1]
 gi|256031968|ref|ZP_05445582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M292/94/1]
 gi|260169105|ref|ZP_05755916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           F5/99]
 gi|261219196|ref|ZP_05933477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261315608|ref|ZP_05954805.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261318046|ref|ZP_05957243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261322257|ref|ZP_05961454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261758612|ref|ZP_06002321.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|265989077|ref|ZP_06101634.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
 gi|225617047|gb|EEH14093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|260924285|gb|EEX90853.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261294947|gb|EEX98443.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261297269|gb|EEY00766.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261304634|gb|EEY08131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261738596|gb|EEY26592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|264661274|gb|EEZ31535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
          Length = 467

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 453

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +V++DSR I    +F+A+ G + D H F   A+  GA AI+V+    L         N
Sbjct: 24  IEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNAVLAGASAILVNRQLPL---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P L+V++T   L   +  +  +    ++A+TG+SGK+SV      I ++ G
Sbjct: 75  IPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSGKTSVKEMTASILRQCG 126


>gi|24375703|ref|NP_719746.1| UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
 gi|38372363|sp|Q8E9P8|MURC_SHEON RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24350637|gb|AAN57190.1|AE015855_1 UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
          Length = 488

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 134/326 (41%), Gaps = 54/326 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ +VVS+A + Q+          I +V        L   R +G      +A+ GT G
Sbjct: 78  QQADVVVVSTAINPQNPEIIAAKELRIPIVRRAEMLAELMRYR-HG------VAIAGTHG 130

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S +  +  ++G   +F IG    ++S   + RL T S   +A+A     S+L  Q
Sbjct: 131 KTTTTSLIASLYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADESDASFLHLQ 187

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D +        +    F   LP 
Sbjct: 188 PMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295
              A++  DD   +E+M R       +++ G++        V A++  QQ      T+  
Sbjct: 225 YGVAVVCIDDPVVREIMPRISR---HIVTYGFRDD----ADVQALNFSQQGHQCRFTVRR 277

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
           +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF+ +G    
Sbjct: 278 KGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFAT 337

Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377
            +G  + V DY H  + +   +K  R
Sbjct: 338 PKGEVMLVDDYGHHPSEVAATIKAAR 363


>gi|293366852|ref|ZP_06613528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319153|gb|EFE59523.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 454

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 145/343 (42%), Gaps = 54/343 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115
           + G E I  S  +SL D    I  N  I     ++ +   + L +      S L  + P 
Sbjct: 59  SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEAANRGLKILTEVELSYLISEAP- 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174
            I+AVTGT+GK++V S +  + Q+S L+    G    ++S  AQ+ +    S  YL   L
Sbjct: 118 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+     E   H         I +I    TN+   H+DYH+T + Y NAK +++
Sbjct: 173 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292
           +     +     Y    Y +  +  + N   +      Q +   I++K    + N  ++ 
Sbjct: 216 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 269

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  KD      LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 270 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
            R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 324 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 360


>gi|329734436|gb|EGG70749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU045]
          Length = 449

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 145/343 (42%), Gaps = 54/343 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115
           + G E I  S  +SL D    I  N  I     ++ +   + L +      S L  + P 
Sbjct: 54  SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEAANRGLKILTEVELSYLISEAP- 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174
            I+AVTGT+GK++V S +  + Q+S L+    G    ++S  AQ+ +    S  YL   L
Sbjct: 113 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+     E   H         I +I    TN+   H+DYH+T + Y NAK +++
Sbjct: 168 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292
           +     +     Y    Y +  +  + N   +      Q +   I++K    + N  ++ 
Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  KD      LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 265 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
            R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 319 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355


>gi|218282555|ref|ZP_03488805.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
 gi|218216542|gb|EEC90080.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
          Length = 440

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 115/270 (42%), Gaps = 52/270 (19%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--QRSGLSSFQIGPT 150
            V  N + +  +  +  Y K+ +   AVTGT GK++V + + ++   Q+  L +  IG  
Sbjct: 81  FVEQNAKIYTEIEVAYRYAKNFD-YAAVTGTDGKTTVTTLLFEMLNRQKKSLVAGNIG-- 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AG 207
                          +P+    AL Y  +    +V++E     L   +L GI+       
Sbjct: 138 ---------------TPL-CELALEYTDTN--YNVALE-----LSNFQLLGIETFRPHVS 174

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-----SKEVMKRAHN 262
           + TNL  DH+DY  + +AYF +KMR++E            ADD +      + V+K A N
Sbjct: 175 TVTNLAPDHLDYMDSLEAYFESKMRIYEN---------TNADDYFIRNVDDENVVKYAQN 225

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGL 321
             C V+    + K + L K        Q     + + F      + GEF   NA++A+ +
Sbjct: 226 IPCHVIDFSLKRKDVDLYK------DDQYAYYKDTQLFKLSDLKIVGEFNCGNAMMASCM 279

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              +G+    + E + +   V  R E+V T
Sbjct: 280 AYLMGVSLFNIQEVIREFSGVEHRIEYVDT 309


>gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 465

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 46/245 (18%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E KI  V  DSR +  G +++ I G K +GH ++ QAIA GA+A++              
Sbjct: 24  EEKIQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQAIANGAKAVLWERK---------- 73

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             N P    +++V++T K L   A     +    ++ +TG++GK+S    +  + Q   +
Sbjct: 74  EPNPPKEVVVILVEDTTKALQDLAKAYRHQLNMKVVGITGSNGKTSTKDILASLLQEHYI 133

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQ----- 196
           +   +G          +N +  P        L+ LS S+ V    +E     L +     
Sbjct: 134 TQKTLG--------NYNNEIGVP--------LTLLSLSENVEAAVIEMGMENLGELSFLT 177

Query: 197 HRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           H ++  I +I    +N+G  H++  +T +    AK+ + E L  KE    IY  D   +E
Sbjct: 178 HMVEPDIAII----SNVGTAHLENLKTMENIAKAKLEIVEGL--KEHGLFIYNGD---QE 228

Query: 256 VMKRA 260
           +++ A
Sbjct: 229 ILQNA 233


>gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
          Length = 466

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 13/122 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V  DSR +  G +FV I G + DGH F  +A+++GA A++           A +   
Sbjct: 26  IEAVRIDSRAVSPGSLFVCIPGERLDGHNFAVEAVSKGAAAVLADRPL------AGLPEG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           TP+L+V +T   L   A     +    ++AV+G++GK++V      I  +       +GP
Sbjct: 80  TPVLLVRDTVAALGKLAKAWRERAQARLVAVSGSAGKTTVKELTAAILAK-------VGP 132

Query: 150 TS 151
           T+
Sbjct: 133 TA 134


>gi|2149895|gb|AAC45626.1| D-glutamic acid adding enzyme [Staphylococcus aureus]
          Length = 450

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    ++   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 455

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 142/370 (38%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N++  DSR I  G +F+ + G + DGH FI  A   GA A           FS      
Sbjct: 26  LNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFENGAVAT----------FSEKELPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V++  K     A     K   +++AVTG++GK+S    +  +             
Sbjct: 75  KPHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVL------------ 122

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
           ++T  ++         + I L   + ++       V      H  D H L  I +     
Sbjct: 123 STTYKTYKTQGNYN--NEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAV 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVMKRAHNA 263
            T +G  H++Y  ++      KM++ + +   +S  I+ A      D Y  E     +  
Sbjct: 181 LTLVGEAHLEYFGSRDKIAQGKMQIVDGM---DSNGILIAPGDSIIDPYLPE-----NQM 232

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R       G +  L        K  +T +          PLPG++   NA+VAA +  
Sbjct: 233 VIRF------GDYQELNVTDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGK 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK---NIRTI 379
            + +    ++E LE + +   R E+    + G  I  D Y     ++ +IL+   NI   
Sbjct: 287 LLAVADEDIIEALESVQLTANRTEWKKA-ANGADILSDVYNANPTAMRLILETFANIAKN 345

Query: 380 TSGRIIVVFG 389
             G+ I V  
Sbjct: 346 PGGKKIAVLA 355


>gi|327392722|dbj|BAK10144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
           ananatis AJ13355]
          Length = 438

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 122/282 (43%), Gaps = 46/282 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A  + L  P+ +Y+      
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGLPAL-SLLKAPAQLYV------ 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  L+      +K  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 157 ----------LELSSFQLETTH--SLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADD  +  V      A  R +S G      HL       NKQQ +I +
Sbjct: 205 ----NAQVCVVNADDGMTMPV----RGADARCVSFGIDIGDYHL-------NKQQGSIWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             K    L      L G+    NAL A  L  A+G+  +  L  L     +P RF+ V  
Sbjct: 250 RAKGEKVLNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGLPHRFQLV-H 308

Query: 352 NSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGG 392
            SRG R   D   T+  S E  LK +    +G + ++ G  G
Sbjct: 309 QSRGVRWINDSKATNVGSTEAALKGLE--VNGTLWLLLGGDG 348


>gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 455

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 142/370 (38%), Gaps = 50/370 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N++  DSR I  G +F+ + G + DGH FI  A   GA A           FS      
Sbjct: 26  LNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFENGAVAT----------FSEKELPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V++  K     A     K   +++AVTG++GK+S    +  +             
Sbjct: 75  KPHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVL------------ 122

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
           ++T  ++         + I L   + ++       V      H  D H L  I +     
Sbjct: 123 STTYKTYKTQGNYN--NEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAV 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVMKRAHNA 263
            T +G  H++Y  ++      KM++ + +   +S  I+ A      D Y  E     +  
Sbjct: 181 LTLVGEAHLEYFGSRDKIAQGKMQIVDGM---DSNGILIAPGDSIIDPYLPE-----NQM 232

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R       G +  L        K  +T +          PLPG++   NA+VAA +  
Sbjct: 233 VIRF------GDYQELNVTDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGK 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK---NIRTI 379
            + +    ++E LE + +   R E+    + G  I  D Y     ++ +IL+   NI   
Sbjct: 287 LLAVADEDIIEALESVQLTANRTEWKKA-ANGADILSDVYNANPTAMRLILETFANIAKN 345

Query: 380 TSGRIIVVFG 389
             G+ I V  
Sbjct: 346 PGGKKIAVLA 355


>gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 455

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR I+AG +F+A+ G + DGH ++ +  A+GA A +V    +         S  P 
Sbjct: 28  VSIDSRAIKAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVA--------DSTLPQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           L+V +TR+ L    +       + + AVTG+SGK++V   +  I +  G
Sbjct: 80  LLVKDTRQALGQLGALNRAAFTKPVAAVTGSSGKTTVKEMLASILRTRG 128


>gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
 gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
          Length = 470

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 154/379 (40%), Gaps = 44/379 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR    G +FVAI G++ D H F+P   A+   A + S   + QD+      N P 
Sbjct: 29  ISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAALAS--RTPQDW------NVPT 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     K    ++AVTG++GK++V   +  I   +  +  ++   +T
Sbjct: 81  LQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL---AT 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  +N +  P  ++   A   L+   V  + +       D  ++   +       N 
Sbjct: 138 AGNF--NNDIGLPLTLFRLHAAHQLA---VVELGMNHPGETSDLAKI--AEPTVAVVNNA 190

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKRAHNA 263
            R+H ++  T +A       +   L P +  A+  ADDAY+           +M  A N+
Sbjct: 191 QREHQEFMATVEAVALEHASVIHALSP-QGIAVFPADDAYASIWRVAATGNRIMDFALNS 249

Query: 264 GCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             R      +G F  ++  +       +VT+ V            G+   +NAL A    
Sbjct: 250 AERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVL-----------GDHNAHNALAATSAA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           +A G+    +   LE    V GR +     +GT +    I   Y    +S+   +  +  
Sbjct: 299 LAAGVSLDAIRRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLAP 358

Query: 379 ITSGRIIVVFGCGGDRDQG 397
             + R++V+   G   D G
Sbjct: 359 RPAPRVLVMGDMGEVGDNG 377


>gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
 gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
          Length = 455

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 104/241 (43%), Gaps = 28/241 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +DSR I++G +FVA+VG + DGH F+ +  A+GA A +V                 
Sbjct: 26  DSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAAKGAVAALVQRTMP--------ELGL 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L V +TR  L    S     +   + AVTG+SGK++V   +  I +         GP 
Sbjct: 78  PQLQVADTRLALGRLGSLNRQAYSGPLAAVTGSSGKTTVKEMLASILRTR-------GPV 130

Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGS 208
            +T  +   +N L  P        L  L+ + V  V  + AS  G   + +   +     
Sbjct: 131 LATRGNL--NNDLGVP------LTLLELAPEHVGAVIELGASRIGEIAYTVALTRPQVAI 182

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN G  H+      +    AK  + E  LP +  A++  DD       +RA  AG RVL
Sbjct: 183 ITNAGTAHVGEFGGPEKIVEAKGEILEG-LPADGIAVLNRDDPAFDIWQRRA--AGRRVL 239

Query: 269 S 269
           S
Sbjct: 240 S 240


>gi|306836487|ref|ZP_07469460.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
 gi|304567650|gb|EFM43242.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
          Length = 487

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 117/279 (41%), Gaps = 45/279 (16%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRL 162
           L A+ + G H + +LA  GT GK+S  S      Q +GL  SF IG         Q NR 
Sbjct: 106 LLAALMEG-HTQVLLA--GTHGKTSTTSMAVSAMQHAGLDPSFAIG--------GQLNRA 154

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T             ++ G T  +  A +   D   L     IA   TN   DH+DY  +
Sbjct: 155 GT-------------NAHGGTGEAFVAEADESDASLLRYSPDIA-VITNAEPDHLDYFHS 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------- 274
             AYF       + + P     ++ A+D ++ E+ ++A + G  V  +GY G        
Sbjct: 201 ADAYFKVFADFADLVTPDTGYLVVCAEDEHAAEIGEQALSRGINV--IGYGGAEKARTTS 258

Query: 275 ----KFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 +  ++  A      V +S+ G  +   +   +PG   V N++ A    +  G +
Sbjct: 259 VPLAATLTAEETTAAGMACTVQLSLPGVEESVSYQLQIPGHHMVLNSMAALIAGVLSGGE 318

Query: 329 SALVLEHLEKLHVVPGRFEFVGT-NSRGG--RIYVDYAH 364
            + + E L     V  RFE+ G+ + +GG  R++ DYAH
Sbjct: 319 PSTIAEGLADFSGVRRRFEYRGSVDWQGGSVRVFDDYAH 357


>gi|227503281|ref|ZP_03933330.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
 gi|227075784|gb|EEI13747.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
          Length = 487

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 117/279 (41%), Gaps = 45/279 (16%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRL 162
           L A+ + G H + +LA  GT GK+S  S      Q +GL  SF IG         Q NR 
Sbjct: 106 LLAALMEG-HTQVLLA--GTHGKTSTTSMAVSAMQHAGLDPSFAIG--------GQLNRA 154

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T             ++ G T  +  A +   D   L     IA   TN   DH+DY  +
Sbjct: 155 GT-------------NAHGGTGEAFVAEADESDASLLRYSPDIA-VITNAEPDHLDYFHS 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------- 274
             AYF       + + P     ++ A+D ++ E+ ++A + G  V  +GY G        
Sbjct: 201 ADAYFKVFADFADLVTPDTGYLVVCAEDEHAAEIGEQALSRGINV--IGYGGAEKARTTS 258

Query: 275 ----KFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 +  ++  A      V +S+ G  +   +   +PG   V N++ A    +  G +
Sbjct: 259 VPLAATLTAEETTAAGMACTVQLSLPGVEQSVSYQLQIPGHHMVLNSMAALIAGVLSGGE 318

Query: 329 SALVLEHLEKLHVVPGRFEFVGT-NSRGG--RIYVDYAH 364
            + + E L     V  RFE+ G+ + +GG  R++ DYAH
Sbjct: 319 PSTIAEGLADFSGVRRRFEYRGSVDWQGGSVRVFDDYAH 357


>gi|226357935|ref|YP_002787675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (MurE synthetase) (UDP-N-acetylmuramyl-tripeptide
           synthetase); Mur ligase family protein; Cyanophycin
           synthetase [Deinococcus deserti VCD115]
 gi|226320178|gb|ACO48171.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (MurE synthetase)
           (UDP-N-acetylmuramyl-tripeptide synthetase); putative
           Mur ligase family protein; putative Cyanophycin
           synthetase [Deinococcus deserti VCD115]
          Length = 724

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 133/329 (40%), Gaps = 35/329 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF S    + P  ILA+TGT+GKS+ A  V  I   +G     +G T+T   +  D R+ 
Sbjct: 318 LFPSGSRSRIP--ILALTGTNGKSTTARMVAHILAHAG---HTVGFTNTSGVYVADKRIH 372

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           +        A   L    VT   +E +  GL +  L   +   G+  N+  DH+      
Sbjct: 373 SGDATGPKSARMVLRHPAVTVAVLETARGGLLREGLGFDRADVGAVLNVKSDHLGLGGVN 432

Query: 224 QAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIH 278
                A+++ L   ++     +++ ADD  +   M+R       + S+    G +    H
Sbjct: 433 TVRDLARVKSLVVRVVASSGLSVLNADDPLTLG-MRRVARGRIALFSISGLDGNKALRDH 491

Query: 279 -----LKKVCAIHNKQQVTISVEGKDFDFLF---PLP------GEFQVYNALVAAGLCIA 324
                L  VC       V    +G +   L     +P        F V NAL AA +C+ 
Sbjct: 492 IDAGGLAVVCEPQADGDVIAVYDGGERQSLMRAADIPATLGGLARFNVENALAAAAMCLG 551

Query: 325 IGIDSALVLEHL----EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL---EMILKNIR 377
           + +   ++   L          PGR      ++ G R+ +DYAH  ++L     +L  +R
Sbjct: 552 LDLTLEVIRSALTTFTSSFEQSPGRLNV--HDAHGFRVILDYAHNPDALAAQRALLHRLR 609

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +   GR+I +    GDR       +G+IA
Sbjct: 610 S-PGGRLIGMVSVPGDRRDDDIREVGEIA 637


>gi|224369147|ref|YP_002603311.1| Mpl [Desulfobacterium autotrophicum HRM2]
 gi|223691864|gb|ACN15147.1| Mpl [Desulfobacterium autotrophicum HRM2]
          Length = 472

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 155/385 (40%), Gaps = 60/385 (15%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + I+ VTGT GK++ +S +  +  ++GL  SF IG    ++ F  + R+           
Sbjct: 115 KKIILVTGTHGKTTTSSLMAHVLNQAGLDPSFMIG--GIVTDFNSNYRIG---------- 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLI--AGSFT---NLGRDHIDYHQTQQAYF 227
                  G  ++ +E   +  D    D G K +  A  FT    +  DH D  +      
Sbjct: 163 -------GGDYIVIEGDEY--DTAFFDKGPKFMHYAPCFTIMTGVEFDHADIFRDLDHVR 213

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCA 284
                  + LLP ES  I + DD   KE++  A+N   R+   G+   + + I LK    
Sbjct: 214 QIFAAFVKGLLP-ESMTIAWGDDMNLKEILAHANN---RIQRYGHGPGEWQCIDLKV--- 266

Query: 285 IHNKQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              +Q  ++      EGK   F  PL G+  V NAL    +   I I   ++   L    
Sbjct: 267 ---EQGTSVFRIKDPEGKILRFAIPLMGDHNVMNALAVIAVARQINIPVDVLARALVSFS 323

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKR 399
            V  R E  G   RG  +  D+AH   ++   L+ +R   T GRII VF      +   R
Sbjct: 324 GVKRRQEVRGV-KRGITVMDDFAHHPTAVRETLRAVRPFYTQGRIIAVF--EPRTNSSMR 380

Query: 400 PIMGKI---ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR---IEAIRTAI 453
            +   I   A D AD+  +   +   + P + R      +    E+G +    +   T +
Sbjct: 381 KVFQTIYPQAFDDADLVCICRPSAMGKIPVEERLSPEKLVADICERGTQALLFDDTDTLV 440

Query: 454 EMLNKQDV-----LVVAGKGHETVH 473
           + L K  V     L+++  G + +H
Sbjct: 441 DFLVKMGVTGDLMLIMSNGGFDNIH 465


>gi|305680833|ref|ZP_07403640.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659038|gb|EFM48538.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
          Length = 477

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 160/416 (38%), Gaps = 56/416 (13%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSG 141
           A I  + P LV    +    +  S L G+       + + GT GK+S  S      Q +G
Sbjct: 78  AAIPQDNPELVAAREQNIPVIRRSDLLGELMTGSTQVLIAGTHGKTSTTSMAVVAMQAAG 137

Query: 142 LS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQH 197
           +  SF IG         Q N+  T +             QG  H  V   + S   L ++
Sbjct: 138 MDPSFAIG--------GQLNKAGTNA------------HQGSGHCFVAEADESDASLLRY 177

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
             D I ++    TN+  DH+D+  T +AYF      F   L      ++  DD ++  + 
Sbjct: 178 SPD-IAVV----TNIEPDHLDFFHTPEAYFQV-FDDFASRLTDTGVLVVCLDDEHAAALG 231

Query: 258 KRAHNAGCRVLSVGYQGK----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +R      +V   GY             +  ++ V          + V  ++ +    +P
Sbjct: 232 ERQKT---KVTVRGYGSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIP 288

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYA 363
           G   V NA  A    +  G D A + + + +   V  RFEF G     + RG  +Y DYA
Sbjct: 289 GTHMVLNAAAALTAGVLAGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRGVEVYDDYA 348

Query: 364 HTSNSLEMILKNIR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           H    +  +L   R       SG++IVVF         +       AL LAD A+V D  
Sbjct: 349 HHPTEVRAVLTAAREKLAARGSGQVIVVFQPHMYSRTQEFAAEFAEALSLADAAVVLDIY 408

Query: 420 PRSEDP-EKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
              E P + I +++I        + + N     +T  E+ +  D+++  G G  TV
Sbjct: 409 GAREQPHDGITSQLIIDRMTNKVVHQPNFSLVPQTVAELAHPGDMVITMGAGDVTV 464


>gi|298694474|gb|ADI97696.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 449

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    ++   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 453

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 161/405 (39%), Gaps = 36/405 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKED--GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +  VS+    ++  ++++ +  +K D   +  + QAI  GA AI+V            I 
Sbjct: 26  LKSVSTRVFGVKPEYLYIYLTYSKSDYNPNPDVEQAIKNGAAAIMVP---------CKID 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P ++V+NT   L         K    ++AVTGTSGK+S    +  +       S + 
Sbjct: 77  CKVPQIIVENTDTALRTLCKHYRKKFDIPVIAVTGTSGKTSTKDLIALVL------SERF 130

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T+S+   ++ +  P        L    +  ++ + +   S+G  +  +D ++   G
Sbjct: 131 NTHKTLSNV--NDLIGVP-----MTTLQINDTHQISVIEIGLRSYGHIKKGVDIVRPSIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++G  HI    +++    AKM +      K    II  DD     + ++ +    ++
Sbjct: 184 VITSIGTAHISSFGSKENIMKAKMEV-ATYFDKNDILIINGDDPLLSTIKEKPY----KI 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAI 325
           + +   GK  +  K      ++ V    + K  + LF L  PG   VYNA+ A  +    
Sbjct: 239 IRISLNGKGEYNAKDVRDLGEKGVEFKCDYKGEEHLFKLKVPGIHNVYNAMFAIAIGDLF 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            I+   V   + K      R   V   +    I   Y    +S++  +  +++    + I
Sbjct: 299 DIEVDDVKRGIVKFQPDNLRVNIVKMKNNAKIILDCYTSELDSMKAGINVLKSFGGNKKI 358

Query: 386 VV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            V    +GCG   ++  R I G+  +   DI +    N R  + E
Sbjct: 359 AVLGSMYGCGNLTEEIHREI-GRYVIGKCDILVTVGGNARYINEE 402


>gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
 gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
          Length = 463

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 134/324 (41%), Gaps = 34/324 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I +G +FVA+ G   DGH ++  A   GA A VV  A    D S  +    P 
Sbjct: 31  VSTDTRRIASGDVFVALRGENFDGHDYLAVAEKAGAVAAVVDKA----DPSMGL----PQ 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T   L+  A           +A+TG+SGK++V   V  I  + G         +T
Sbjct: 83  IRVSDTIDALAQLALANRNASTARFVAITGSSGKTTVREMVAAILSQVG---------NT 133

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           +++    +N +  P  ++       L +     + + AS  G   H ++ ++      TN
Sbjct: 134 LATEGNLNNHIGVPLTLFRLSPEHQLGA-----IELGASGLGEIAHTVNIVRPEVVILTN 188

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            G+ H++          AK  + +   P+    ++ +DD       +R   AG R ++ G
Sbjct: 189 AGQAHLEGFGGYDNVVRAKGEIIDG-APETGLVVLNSDDPAFDLWRQR---AGQRRVA-G 243

Query: 272 YQGKFIHLKKVCA--IHNKQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             G+           IH+   V +      +G   D    L GE  + NAL+A      +
Sbjct: 244 VSGRASEGADYVPNDIHSDGDVRMFCAQGPDGWSCDVRLSLQGEHNITNALLAIAAAREL 303

Query: 326 GIDSALVLEHLEKLHVVPGRFEFV 349
           G D+  +   L  L  V GR + +
Sbjct: 304 GADNEAIKAGLAALKPVKGRLQMM 327


>gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
 gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
          Length = 468

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 151/373 (40%), Gaps = 46/373 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR I++G IF A+ G + DGH ++  A   GA   VV+  +  +   +  +     
Sbjct: 32  VSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCAVVNREWYSRHAESVHQEGWRY 91

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +T + L   AS    K    ++ + G++GK++       +      +++++     
Sbjct: 92  LVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKEMTAAVLG----TTYKV----H 143

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206
           +S    +N L  P  ++  +    L+    G+ H              ++ +  IA    
Sbjct: 144 MSKGNLNNHLGVPLTLFGLRDTHDLAVVEMGINHPG-----------EMELLTSIARPDF 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHN 262
              TN+G +H+++         A+  L+ + + +     +   DA     ++E+  R   
Sbjct: 193 ALLTNIGHEHLEFLGDLDGVAEAETVLYHDTIMRGGTVFVNTGDARLLAAAREIQNRVDY 252

Query: 263 AGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN--ALVAA 319
              R       G  I  +K V     +   T+         +    G   V N  A  A 
Sbjct: 253 GPER------DGNLIWPEKIVLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVAAAAV 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           G C  + +++  + E L  L    G  R EF+   + G RI+ D Y    +S+ M LK +
Sbjct: 307 GSCFNVPLNA--IAEGLGSLVPADGWKRLEFI--EAGGIRIFNDTYNANPDSVTMALKTV 362

Query: 377 RTI-TSGRIIVVF 388
             I  SGR ++VF
Sbjct: 363 CEIPCSGRRVLVF 375


>gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9902]
 gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9902]
          Length = 449

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 150/369 (40%), Gaps = 47/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  + +DSR +Q G  FV +VG   DGH F+ Q  A GA+A VV      Q +S  + S+
Sbjct: 26  LGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSALGAQAAVVE-----QSWSDPLPSD 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                VD+T K     A        + ++AVTG++GK++    ++            + P
Sbjct: 81  LLHWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTRELIRA----------ALAP 130

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLD-GIKLIAG 207
              +     +N      P+ +  A S+  +     + +E    G  +  RL    +    
Sbjct: 131 LGDVHCSEGNNNNDIGVPLTVLSADSHHCA-----LVIEMGMRGPGEIERLSRCTEPDVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI    +++A   AK  +    L  +   +I A DA  +  + +  +   RV
Sbjct: 186 VITNIGTAHIGRLGSREAIAAAKCEITAA-LKSDGVVVIPAGDALLETALSKVWSG--RV 242

Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           + V       +    + AI   Q     +E        PL G     N L+A  +   +G
Sbjct: 243 VRVRLADDTPVAADCIGAIDAGQ-----LEVGAHRLPLPLEGRHNARNVLLALAVADQLG 297

Query: 327 IDSALVLEHLEKLHV-VPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKNIRTITS- 381
           +DSA     L  + V VPG     G N R   GG   +D  + + S E ++  +  ++S 
Sbjct: 298 VDSA----SLNAMEVSVPG-----GRNRRLVQGGLTLLDETYNA-SPEAVMAALTLLSSQ 347

Query: 382 -GRIIVVFG 389
            GR   V G
Sbjct: 348 PGRRFAVLG 356


>gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
 gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
          Length = 464

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S+D+R      +F A+ G K D H ++ +AI QG  A+VV    ++         N
Sbjct: 25  VENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGCVALVVERELAV---------N 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P ++V++TR  L   A  L  +     +A+TG+SGK++V     +I Q+
Sbjct: 76  VPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|15924173|ref|NP_371707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926766|ref|NP_374299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650295|ref|YP_186059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus COL]
 gi|82750790|ref|YP_416531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus RF122]
 gi|87160865|ref|YP_493774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194889|ref|YP_499689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267675|ref|YP_001246618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393733|ref|YP_001316408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221305|ref|YP_001332127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979504|ref|YP_001441763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509360|ref|YP_001575019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140645|ref|ZP_03565138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253733578|ref|ZP_04867743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005970|ref|ZP_05144571.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795761|ref|ZP_05644740.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|258415985|ref|ZP_05682255.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|258419732|ref|ZP_05682699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|258438774|ref|ZP_05689927.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|258444520|ref|ZP_05692849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|258447647|ref|ZP_05695791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|258449489|ref|ZP_05697592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|258451881|ref|ZP_05699902.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|258454868|ref|ZP_05702832.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|262048756|ref|ZP_06021638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|269202798|ref|YP_003282067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282892669|ref|ZP_06300904.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|282916433|ref|ZP_06324195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282919964|ref|ZP_06327693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282929228|ref|ZP_06336803.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|283770245|ref|ZP_06343137.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|284024107|ref|ZP_06378505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848176|ref|ZP_06788923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|295407121|ref|ZP_06816922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|296276141|ref|ZP_06858648.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245993|ref|ZP_06929852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|304381257|ref|ZP_07363910.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|60392791|sp|P0A089|MURD_STAAM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392792|sp|P0A090|MURD_STAAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392793|sp|P0A091|MURD_STAAU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900659|sp|Q5HGP8|MURD_STAAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063260|sp|Q2FHQ4|MURD_STAA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063261|sp|Q2FZ92|MURD_STAA8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063262|sp|Q2YXD9|MURD_STAAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224766|sp|A7X1C4|MURD_STAA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|172048845|sp|A6QG83|MURD_STAAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082916|sp|A6U103|MURD_STAA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082917|sp|A5IS69|MURD_STAA9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082918|sp|A8Z3M4|MURD_STAAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2271510|gb|AAC46291.1| UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase [Staphylococcus
           aureus]
 gi|13700982|dbj|BAB42278.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246953|dbj|BAB57345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|57284481|gb|AAW36575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus COL]
 gi|82656321|emb|CAI80735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus RF122]
 gi|87126839|gb|ABD21353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202447|gb|ABD30257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740744|gb|ABQ49042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946185|gb|ABR52121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374105|dbj|BAF67365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721639|dbj|BAF78056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160368169|gb|ABX29140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253728448|gb|EES97177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789733|gb|EEV28073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|257839321|gb|EEV63795.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|257844317|gb|EEV68699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|257848033|gb|EEV72026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|257850013|gb|EEV73966.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|257853838|gb|EEV76797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|257857477|gb|EEV80375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|257860489|gb|EEV83316.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|257863251|gb|EEV86015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|259163212|gb|EEW47772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|262075088|gb|ACY11061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940677|emb|CBI49056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282319873|gb|EFB50221.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282589187|gb|EFB94284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|282594680|gb|EFB99664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282764666|gb|EFC04791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|283460392|gb|EFC07482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470393|emb|CAQ49604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ST398]
 gi|285816865|gb|ADC37352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus 04-02981]
 gi|294824976|gb|EFG41398.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|294967974|gb|EFG44002.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|297177157|gb|EFH36411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|302751006|gb|ADL65183.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340240|gb|EFM06181.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312829577|emb|CBX34419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130974|gb|EFT86958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196913|gb|EFU27256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141002|gb|EFW32849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143058|gb|EFW34848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|323440955|gb|EGA98662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O11]
 gi|323442272|gb|EGA99902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O46]
 gi|329313851|gb|AEB88264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725034|gb|EGG61530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329727477|gb|EGG63933.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 449

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    ++   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
 gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
          Length = 452

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 144/324 (44%), Gaps = 38/324 (11%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           KD  +++N   I  +  +E  I  ++ DSR ++ G +F+  +G   DGH +I  A  +GA
Sbjct: 6   KDLEKILNAKKINLVDNKE--ITGIAIDSRKVKEGDLFIPFLGENVDGHDYIESAFEKGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A     + SL+D      S+  I+ V+++ + +   A          I+A+TG++GK++
Sbjct: 64  VA-----SLSLKD---DFVSDNNIIYVNDSYEAIQGLAKHYLEYLNVKIVAITGSNGKTT 115

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V  I +    + F++  T    +F  +N L  P  I  A   S      +  + + 
Sbjct: 116 TKDIVTSILE----TKFKVHKTQ--GNF--NNELGVPLTILAAPEDS-----DILVLEMG 162

Query: 189 ASSHGLDQHRLDGI-KLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           A + G    +LD + KL+   +   TN+G  HI++  ++     AK  +    + K+   
Sbjct: 163 ADNFG----QLDFLSKLVKPDYTIITNIGESHIEFFGSRAGIAKAKFEITNG-MKKDGFF 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   D+   KE+++   N+     S G      I L+      +K    +S++  +F   
Sbjct: 218 VYNGDEPLLKELVE---NSSINATSCGENSYNDIILENYTITRDKIDFKLSIDKNNFS-- 272

Query: 304 FPLPGEFQVYNALVAAGLCIAIGI 327
             L G+  ++N + A  +   IG+
Sbjct: 273 TTLKGKHNLFNIMFAVAIAKKIGL 296


>gi|282918881|ref|ZP_06326616.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
 gi|282316691|gb|EFB47065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
          Length = 449

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    ++   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           luteolum DSM 273]
 gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium luteolum DSM 273]
          Length = 476

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 165/397 (41%), Gaps = 36/397 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L ++DF +   +L + P     R++ +   + DSR I    IF+A+ G   DGH F+   
Sbjct: 5   LTWEDFRK-CGELVLNPEAHPRREVQDPVAAIDSRAIDGPGIFIALRGESTDGHRFVQDV 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA+  +VS  +   +           +VV +T K L   AS      P  ++ + G+
Sbjct: 64  FRRGADFAMVSREWHSLEKDPVPPPGKAYIVVQDTEKGLQELASIYRDTFPIPVVGIGGS 123

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++       + +    + F++     +S    +N L  P        ++ L  +  T
Sbjct: 124 NGKTTTKEMTAAVLR----TGFKV----HVSRGNFNNHLGVP--------ITLLGMRRDT 167

Query: 184 HVSV--EASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            ++V     +H  +   L  I +   G  TN+G +H+++    +    A+ +LF+ L   
Sbjct: 168 EIAVVEMGINHPGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEGVRLAERKLFDWLDRC 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQ-QVTISVEG 297
                + ADD+    +   A ++   VL  +   +G+    + V   H  +   T++   
Sbjct: 228 RGTIFVNADDS---RLADAATDSERHVLYGTGSPEGRICSAESVSVGHGGRVSFTLTAGA 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRG 355
                     G   V NA+ AA + +  G+ +A V   LE L    G  R E    +  G
Sbjct: 285 VREQVFLQFTGRHNVQNAVAAAAVGLHFGLSTAQVKAGLEGLLPESGWKRLEL---SEEG 341

Query: 356 GRIYVDYAHTSN--SLEMILKNIRTI-TSGRIIVVFG 389
           G   ++  + +N  S+ + L  +  +  SGR I V G
Sbjct: 342 GVTIINDTYNANPDSMRLALDTLADMPCSGRRIAVIG 378


>gi|49483346|ref|YP_040570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425237|ref|ZP_05601662.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427897|ref|ZP_05604295.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430530|ref|ZP_05606912.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433291|ref|ZP_05609649.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436133|ref|ZP_05612180.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903735|ref|ZP_06311623.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905499|ref|ZP_06313354.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908474|ref|ZP_06316304.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910756|ref|ZP_06318559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913959|ref|ZP_06321746.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924004|ref|ZP_06331680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|283957926|ref|ZP_06375377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500992|ref|ZP_06666843.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509950|ref|ZP_06668659.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526539|ref|ZP_06671224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295427669|ref|ZP_06820301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297591373|ref|ZP_06950011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|60390436|sp|Q6GHQ2|MURD_STAAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49241475|emb|CAG40161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271694|gb|EEV03832.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274738|gb|EEV06225.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278658|gb|EEV09277.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281384|gb|EEV11521.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284415|gb|EEV14535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313976|gb|EFB44368.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322027|gb|EFB52351.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325361|gb|EFB55670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327536|gb|EFB57819.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330791|gb|EFB60305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595353|gb|EFC00317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790075|gb|EFC28892.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920611|gb|EFD97674.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095997|gb|EFE26258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467400|gb|EFF09917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128027|gb|EFG57661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297576259|gb|EFH94975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438440|gb|ADQ77511.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315194069|gb|EFU24462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 449

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    ++   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|302332788|gb|ADL22981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 449

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    ++   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|56551728|ref|YP_162567.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|59803054|sp|Q9RNM7|MURC_ZYMMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56543302|gb|AAV89456.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 476

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 113/283 (39%), Gaps = 34/283 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AV GT GK++  S V  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGIDPTVIN-GGIINSYGSNARLGDSDWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   I    TN+  +H+D++ + +   +A +  F
Sbjct: 162 ------------VEADESDGSFLRLDGTLAI---VTNIDPEHLDHYGSFEKVQDAFVE-F 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
              +P    A +  D    + ++ R  +   R+++ G+  +  I    +  I    + T 
Sbjct: 206 VSNVPFYGAAFLCIDHPVVQSILPRIRDR--RLITYGFSAQADIRAVDITPISGGNRFTA 263

Query: 294 SVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            + G+D D         P+PG   + NAL A G+ +   I  A + +   +   V  RF 
Sbjct: 264 VIRGRDGDIRRIENIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFS 323

Query: 348 FVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
            VG    G G + V  DY H    ++ +L   R     R+I V
Sbjct: 324 RVGEIKIGDGSVLVIDDYGHHPVEIKAVLSAARESAQQRVIAV 366


>gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 459

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+DY+ +++    A  R F   +P+   A++  DD   ++++    +  C +++
Sbjct: 180 TNIEDDHLDYYGSRENIVKA-FREFLNKVPESGLAVVCGDDPTVRQLIA---DLTCPLVT 235

Query: 270 VG-YQGKFIHLKKVCAIHNKQQV-TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326
            G Y     +     A+  +  +  +S  G+     +  +PG   + NAL    +   +G
Sbjct: 236 YGSYNSGADYTIDSFALQGETTLGQVSFRGEKLGQLVLNVPGYHNLLNALAVVAVGRYVG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +  + +   L +      R++ +G   +G +I  DYAH    ++  L+  R    GRII 
Sbjct: 296 LSFSQIAAALREFKGAKRRYQLIG-EVKGAKIVDDYAHHPTEIKATLQAARQAHPGRIIA 354

Query: 387 VFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP-EKIRAEII 433
           VF     R    R +  +       ADI I+TD  P  E P E +  ++I
Sbjct: 355 VFQP--HRFTRTRQLFREFGESFAHADILILTDIYPAGEKPIEGVHTKLI 402


>gi|256369849|ref|YP_003107360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
 gi|256000012|gb|ACU48411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
          Length = 467

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G    I +             Y+       
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AII  DDAY + +  R H AG RV+ +  +     G F    K+    + +   
Sbjct: 212 VAASGTAIIGIDDAYCQVIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I S+EG     +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
             RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361


>gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
          Length = 463

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 153/380 (40%), Gaps = 62/380 (16%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S DSR I AG +F A+ G + DGH ++  A+A GA A VVS  +      AT+     + 
Sbjct: 28  SIDSRTIGAGELFFAVRGERVDGHDYVETALADGAVAAVVSMRWL---KPATVEEGKLLR 84

Query: 94  VVDNTR----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-- 147
           V D       + +   A+R+  +  + I+ VTG++GK++    + Q+      + F +  
Sbjct: 85  VPDEDEDCVLQSMQKLANRVRREWGKRIIGVTGSAGKTTTKECIAQVLS----AKFHVLK 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLA-------------KALSYLSSQGVTHVSVEASSHGL 194
              +  + F    +L    P +               +AL+ ++      VS  A  H  
Sbjct: 141 SEGNLNNGFGMPLQLLKLEPEHEVAVIEMGMNHAGEIRALAKIAEPDWAVVSNVAPVH-- 198

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---- 250
            +H  DGI+ IA                      AK  L  E LP +  AI+  DD    
Sbjct: 199 LEHFPDGIEGIA---------------------RAKYELV-EALPADGIAILNGDDERVA 236

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A+ K +  R    G      G   + + +++  A  +  +  + + G+       L G  
Sbjct: 237 AFGKGMRGRTVLYGT---LPGLTVRAVEIEE--AGLDGTRFRVGIVGRVQKIHLRLMGRH 291

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
            V NAL A  + +  GID       LE++     R E +     G +I  D Y     +L
Sbjct: 292 NVLNALAAVAVGLQSGIDLKDCCLALEQMRPTEKRGEVI--ERHGAKIINDCYNSNPRAL 349

Query: 370 EMILKNIRTITSGRIIVVFG 389
           E +++ +R   + R IV+ G
Sbjct: 350 EAMVEALRKTKATRRIVMAG 369


>gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 455

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 11/119 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R+I+ G +F+A+ G   DGH F+ +A  +GA A VVS              N P
Sbjct: 25  NISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKGAAAAVVSEDK---------YRNLP 75

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           ++VV +T K L   AS        N  ++A+TG+ GK++    +  +  + G+S    G
Sbjct: 76  VIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTTKDMLHTVLSQYGVSHVNDG 134


>gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
 gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
          Length = 464

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S+D+R      +F A+ G K D H ++ +AI QG  A+VV    ++         N
Sbjct: 25  VENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGCVALVVERELAV---------N 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P ++V++TR  L   A  L  +     +A+TG+SGK++V     +I Q+
Sbjct: 76  VPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
          Length = 465

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 168/406 (41%), Gaps = 53/406 (13%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+ +KD  +L   L        +  I  +S+DSR I+ G  FV +VGN  DGH ++  A 
Sbjct: 2   DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAF 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPEN----ILA 119
             G +A VVS  Y     +  + +  P  VV +T     L+A  ++   H  N    ++A
Sbjct: 62  DLGIQAAVVSEKY-----NGLVPTGLPHWVVPDT-----LYAYQQIALLHRRNLSLPVVA 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+ GK++    ++ I    G           +SS   +N     + + + K L   S 
Sbjct: 112 VTGSVGKTTTRELIRAILSPLG---------EIVSSRGNEN-----NDVGVPKTLLSGSE 157

Query: 180 QGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                V +E    G  Q  RL  + +      TN+G+ HI    +++    AK  +   L
Sbjct: 158 TDAAFV-LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYL 216

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-------LKKVCAIH---- 286
            P     I + D    K ++++      RV   G+   ++        L+ +   +    
Sbjct: 217 SPDGVVIIPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFALQDIEPDYISQI 276

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           + Q   I  EG+ F    PL G     N L+A  +   +G+ S   L+ L K+++  GR 
Sbjct: 277 DMQNNFILFEGRKFK--LPLEGRHNAMNFLLALTVATELGL-SIKKLDQL-KINMPIGRN 332

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGC 390
             V     G  + +D  + + S E ++ ++  + S  GR   V G 
Sbjct: 333 RLVDC---GQYLVLDETYNA-SPESVIASLELLVSKPGRHFAVLGT 374


>gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           chlorochromatii CaD3]
 gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 476

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 157/375 (41%), Gaps = 50/375 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +FVA+ G + DGH ++      GA   +V+ ++   +       +   LVV
Sbjct: 36  DSREVSEGGLFVALHGERTDGHRYVNDVFQHGATWAMVNRSWYEAEGHPLPPHHKGFLVV 95

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++T   L   A R        I+A+ G++GK++    V  +          +   S+  S
Sbjct: 96  EDTVAGLQHLAVRYRNTFSIPIVAIGGSNGKTTTKEMVAAV----------LASDSSAVS 145

Query: 156 FAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS---FTN 211
            +Q NR      P+ L + + + + + V  V +   +H  +   L   +L+A +    TN
Sbjct: 146 MSQGNRNNHLGVPLTLLQ-MRHSTERAVVEVGI---NHPNEMAML--AELVAPTHLLLTN 199

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G +H+++         A+ +L++      + A I ADD    E ++ A  A      + 
Sbjct: 200 IGHEHLEFLGDLDGVAKAETQLYDYARQHGATAFINADD----ERLRAA--AEGMPFRID 253

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-------------FPLPGEFQVYNALVA 318
           Y    +H + V ++   + VT+  +G+   FL                 G   V NA+ A
Sbjct: 254 YS---LH-EAVDSLVWAEDVTVERDGR-LSFLLVTKGRSEQERLRLHFTGRHNVLNAVAA 308

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
           A + +  GI    + E L  L   PG  R E V     G R+  D Y   S+S+   +  
Sbjct: 309 ATVGLQFGISLHHICEGLAGLQPAPGWKRLEVVEVG--GVRLLNDTYNANSDSMRRAIDA 366

Query: 376 IRTI-TSGRIIVVFG 389
           +  +  +GR I V G
Sbjct: 367 LCDMPCNGRRIAVVG 381


>gi|315084589|gb|EFT56565.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA2]
          Length = 471

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L + L   R + + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRVTLGAARRVVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415


>gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
 gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
          Length = 453

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 160/381 (41%), Gaps = 44/381 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +++V++D+R + AG +F+A+ G + D H F+ +A+A GA A++VS   ++      +   
Sbjct: 24  VDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEAMAAGASALLVSKHVTVAVPQVVVA-- 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                  +TR  L   A  +  +    ++A+TG+SGK+SV      I +  G + +  G 
Sbjct: 82  -------DTRIALGQLAGWVRQQSTARVVALTGSSGKTSVKEMTAAILRECGETLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +N +  P  +     L   +S     V + A+  G   +  +  +      
Sbjct: 135 L--------NNDIGVPLTL-----LRLNASHQYAVVELGANHQGEIAYTTEITRPETALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL   H++   +      AK  +F+  LP    AI+ AD   S +     H+   + + 
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFQG-LPINGTAILNAD---SNDWPHWQHSLHSKTV- 236

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVYNALVAAG 320
                +F    +  +  +   V ++  G  F  +          PLPG   + NAL AA 
Sbjct: 237 ----WRFSSAPQADSDFSATDVKVTSSGTHFVMITPAGSIAIQLPLPGRHNIANALAAAA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           L +++    + + + L  L  VPGR   V       ++ +D ++ +N  S+    + +  
Sbjct: 293 LALSVDAPLSAIQKGLSHLQAVPGRLYPVALAEN--KLLLDDSYNANVGSMTAAAQVLSE 350

Query: 379 ITSGRIIVVFGCGGDRDQGKR 399
           +   R++VV   G   D+ + 
Sbjct: 351 MPGYRVMVVGDMGELGDEAEE 371


>gi|262037247|ref|ZP_06010729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
 gi|261748719|gb|EEY36076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
          Length = 459

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 163/380 (42%), Gaps = 57/380 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN++S +S+      +FVAI G    G+ +I +A+ +GA A V  +A++  D     ++ 
Sbjct: 23  INKISMNSKECGKNDLFVAIRG----GNNYINEALEKGAYA-VYDNAHA--DIKEEYKNK 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGL 142
           T    V+++ +FL  FA +        ++ +TG++GK++V     Q+        +  G 
Sbjct: 76  T--FFVNDSVEFLQKFAKKWREALDVKVIGITGSNGKTTVKDITYQLLSSKYKGKKTEGN 133

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  IG   T+    +D++      I L   +S     G   + +       D      I
Sbjct: 134 YNNHIGLPFTLLRLEKDDKF-----IILEMGMS-----GFGEIELLGKISNPD------I 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261
            +I    TN+G  H+++  T++  F AK     ELLP  +   II  DD Y K + + + 
Sbjct: 178 SII----TNIGESHLEFLHTKENVFKAKT----ELLPYTKEVLIINGDDDYLKNINESSL 229

Query: 262 NAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQV 312
               +VL   S   +    +   +         ++    K+ +      F   + GE  +
Sbjct: 230 KT-IKVLRKDSKNIEKSNFYYGNINFDEKGSSFSLEYSEKENEKFQKKLFKTNILGEHNI 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLE 370
            N  +A  +    GI+   + E ++ + +   RF+      +G  IY++ A+ ++  S++
Sbjct: 289 LNLTMAIAVAKQFGIEDKDIEETVKNIKLTDMRFQIT---EKGNTIYINDAYNASPASMK 345

Query: 371 MILKNIRTITSGRI-IVVFG 389
             L+    I + R+ I V G
Sbjct: 346 KSLETFSEIYNDRMKIAVLG 365


>gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
 gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
          Length = 447

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 159/400 (39%), Gaps = 80/400 (20%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  V  DSR + AG +FV + G + DGH FI QAIA GA    +++ +S+QD    I 
Sbjct: 19  RIVTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIASGA----IATFWSVQDQPEDIT 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------- 140
                  ++  +K  + +   L  K    ++A+TG++GK++       +  ++       
Sbjct: 74  VIQVTDCLEAMQKLATYYRELLAPK----VVAITGSNGKTTTKDLTASVLSQAFRTYKTQ 129

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  + +IG   TI    +D ++              +   G+ H     +   + +  + 
Sbjct: 130 GNYNNEIGLPYTILHMPKDTKVV-------------VLEMGMDHAGDLTTLSTIARPDIA 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYS 253
            I +I       G  HI+   ++      KM +   L       +P + P +       +
Sbjct: 177 AITMI-------GEAHIENLGSRAKIAQGKMEIATALAADGCLIIPCDEPLLAPLVQGMT 229

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V+    +AG             H+ +     + +Q   SV  K+ D+  PL G + V 
Sbjct: 230 QQVVTFGIDAGDVA---------AHILE----EHAEQTVFSV--KEQDYRIPLLGTYNVK 274

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NAL+A  +    G+    +   L+ + V   R +++   + G R+  D Y     ++ ++
Sbjct: 275 NALIAYSIGEKFGVTPEQIANGLKNVQVTKNRTQWLEMEN-GTRLLSDVYNANPTAMGLV 333

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           L +                     GK P+ G+    LAD+
Sbjct: 334 LDSF--------------------GKLPVQGRRFAVLADM 353


>gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 460

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 18/131 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++S++SR+ ++  +F+AI G   DGH F  Q++  G+ AI+     S+         +
Sbjct: 30  IQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVKNGSLAILSEKILSI---------D 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V+NT   +   AS +  K     +A+TG+SGK+SV      I  + G        
Sbjct: 81  HPQIIVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSVKEMTHTILSQVG-------- 132

Query: 150 TSTISSFAQDN 160
            STIS+   +N
Sbjct: 133 -STISTKKNNN 142


>gi|254391593|ref|ZP_05006792.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294812134|ref|ZP_06770777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440710|ref|ZP_08215444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705279|gb|EDY51091.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324733|gb|EFG06376.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 492

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 118/277 (42%), Gaps = 25/277 (9%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG--PTSTISSFAQDNRL 162
            A RL G      LAVTGT+GK++    +  I + +GL +  +G    S + +   +N  
Sbjct: 103 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGLRTAAVGNIGVSLLDAVLGENTG 162

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                           +     ++VE SS+ L  H    ++  + +  NL  DH+D+H +
Sbjct: 163 ENAGQDAGRDGGEGADANAYDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGS 220

Query: 223 QQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL--SVGYQGKF-- 276
            +AY   K R++E      + A +Y A D  ++++++ A    GCR +  ++G  G    
Sbjct: 221 MEAYAADKGRIYE----GNTVACVYNAADPATEDLVREADVEEGCRAIGFTLGTPGPSQL 276

Query: 277 -----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                I + +    +  QQ     E  D D     P    + NAL AA L  A G+ +  
Sbjct: 277 GVVDGILVDRAFVANRHQQAQELAEVADID----PPAPHNIANALAAAALARAFGVPATA 332

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           V E L      P R E V   +  G  YVD +  +N+
Sbjct: 333 VREGLRSFRPDPHRIEKVADVA--GVAYVDDSKATNT 367


>gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
 gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
          Length = 500

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 157/406 (38%), Gaps = 73/406 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R + +G +FVA+ G K DGH F  QA+  GA A++ +     ++  A      P+   
Sbjct: 33  DTRELTSGGLFVALPGEKVDGHDFAAQAVEAGAVAVLAA-----REVDAPAIVVPPLAAG 87

Query: 96  DNTRKFLSL--------------------FASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           +   + ++L                    +  +   +    ++ VTG+SGK+S    + Q
Sbjct: 88  EAHERSVALTGDKDGSGAAVLAALAKLARYVVQRLAEGELTVVGVTGSSGKTSTKDVIAQ 147

Query: 136 ICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +        +GPT +   SF  +N L  P     A A +        H+ +E S+ G 
Sbjct: 148 LLE-------PLGPTIAPPGSF--NNELGHPWTALRAGAETR-------HLVLELSARGP 191

Query: 195 DQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
               +  +  IA    G   N+G  H+    +++     K  L E  LP++  A++  DD
Sbjct: 192 GH--IAHLAAIAPPKIGVVLNVGSAHVGEFGSREGIAKTKGELVEA-LPEDGVAVLNLDD 248

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPG 308
                +  R      RV+ VG         +   + ++ + +  +     +     PL G
Sbjct: 249 PLVAAMASRTK---ARVVFVGESPSAQVRAENITLDDEARASFRLITPAGEAGVKLPLHG 305

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           E  V NAL AA + + +G     +   L  L     R   V T   G  I  D +     
Sbjct: 306 EHHVGNALSAAAVALELGATPEEIATRLSALERRSARRMEVVTRPDGVTILNDSFNANPE 365

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-----IMGKIALD 408
           S+   LK +  +T             R+ G+R      +MG++  D
Sbjct: 366 SMRAGLKALAAMT-------------RETGRRSWAVLGVMGELGAD 398


>gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 345

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 130/335 (38%), Gaps = 40/335 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q RE  I  V +DSR I+ G +FV +VG + DGH +    +  GA A +           
Sbjct: 2   QHRELPIQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRD------- 54

Query: 84  ATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              R   P   ++VVD+T   L   A     +    ++ +TG++GK++    V  +    
Sbjct: 55  ---RGEAPAGAVIVVDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLS-- 109

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRL 199
             +++++  T    +F  +N +  P        L+ L     T ++V E    G  +H +
Sbjct: 110 --TTYKVHKTG--GNF--NNHIGLP--------LTILEMPADTEIAVLEMGMSG--RHEI 153

Query: 200 DGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           + +  IA       TN+G  H+    ++     AK+ +   + P     I + D+     
Sbjct: 154 ERLSQIARPDVAVITNIGEAHLLQLGSRHEIARAKVEIISGMKPG-GLLIYHGDEPLIPM 212

Query: 256 VMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           V+  A      G    + G              H+K  +  S+   +     PL G+  V
Sbjct: 213 VLGEAETVKPEGLGTFTFGLDHSNDDYPTGMMFHSKGIIFTSLLHPEEGLDLPLLGQHNV 272

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            N L A  +    GI    +   L  LH+   R E
Sbjct: 273 INCLAALAVARHFGITEENIRTGLTGLHLTGMRIE 307


>gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
 gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
          Length = 457

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 164/397 (41%), Gaps = 39/397 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  IN++  DSR I AG +F+ + G + DGH FI  A   GA A      ++ +D  A
Sbjct: 21  YEDVAINQIEFDSRKITAGDLFLPLKGVR-DGHEFIQTAFENGALA-----TFTEKDLPA 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ILV D    F  L A  L  K   +++AVTG++GK++    +  I   +  + 
Sbjct: 75  ---DQAHILVEDALEAFQKLAAYYLE-KTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G          +N +  P   Y A  +   + + V  +      H  D H L  + K
Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSTLAK 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+++  ++      KM++ ++ +P  S  ++ +D      ++     +
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPSD-----PIVDPFLPS 230

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+  G +G  + + ++     K  +T S    D     P+ G++   NA+VAA +  
Sbjct: 231 NLEVVRFG-EGSDLTVSELTEY--KDHLTFSTNFLDGQITLPVTGKYNATNAMVAAYVAK 287

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI--- 379
             G+    +   L  L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 288 HWGVTEENIFSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLILETFSAIPKN 346

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             G+ I V     +  +    +  ++ L LA  AI T
Sbjct: 347 EGGKKIAVLADMKELGEQSVQLHTQMILSLAPDAIDT 383


>gi|296269384|ref|YP_003652016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
 gi|296092171|gb|ADG88123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
          Length = 462

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 28/165 (16%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LA+TGT+GK++    +  +   +GL +  +G                
Sbjct: 99  LAWRLRGDGAAPWLALTGTNGKTTAVRMLTSMLTAAGLKALAVGNVGV------------ 146

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
             PI  A    Y        ++VE SS  L  H   GI  +A +  N+  DHID+H + +
Sbjct: 147 --PIVEAVREPY------DVLAVELSSFQL--HWSSGIAPLAAAVLNVAPDHIDWHGSLE 196

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
            Y  AK ++F     + +P +IY ADD     + +    AG RV+
Sbjct: 197 EYAAAKAKIF-----RNAPTVIYNADDERCARLAEPYRAAGRRVV 236


>gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 456

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 149/376 (39%), Gaps = 50/376 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +  + +   DSR I  G +FV + G + DGH FI  A   GA A           FS
Sbjct: 20  QFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             +    P ++V++        A+    K   ++ AVTG++GK++    + Q+   + L+
Sbjct: 69  EKVVEGHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLT 128

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGI 202
               G          +N +  P  +           +G   + +E    H  D H L  +
Sbjct: 129 YKTQG--------NYNNEIGLPYTVLHM-------PEGTDKLVLEMGQDHLGDIHLLSEL 173

Query: 203 KLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMK 258
                +   L G  H+++ + +      K+++ +  +P+    ++ AD   DAY  E   
Sbjct: 174 AHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADG-MPEGGLLVVPADPIVDAYLPE--- 229

Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                   V+  G   + FI       I  K  +T      +     P+ G++   NA++
Sbjct: 230 -----NQTVVRFGPDEEIFI----TELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMI 280

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA + +  G+  A + +  E L +   R E+    S G  I  D Y     ++ +IL+  
Sbjct: 281 AAYVALKEGVSEAAIRDSFETLQLTRNRTEWKKA-SNGADILSDVYNANPTAMRLILETF 339

Query: 377 RTITS---GRIIVVFG 389
            TI +   GR + V  
Sbjct: 340 STIPANPNGRKLAVLA 355


>gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
 gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
          Length = 457

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 36/357 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +N++  DSR I AG +F+ + G + DGH FI  A   GA A              
Sbjct: 21  YKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKE-------- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++   ++VD+T +     A+    K   +++AVTG++GK++    +  I   +  + 
Sbjct: 72  -LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G          +N +  P   Y A  +   + + V  +      H  D H L  + K
Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSNLAK 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+++  ++      KM++ ++ +P  S  ++  D      ++     +
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPCD-----PIVDPFLPS 230

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+  G  G  + + ++     K  +T S +  D     P+ G++   NA+VAA +  
Sbjct: 231 NLEVVRFG-DGAELTVSELTEY--KDHLTFSTKFLDGQVTLPVTGKYNATNAMVAAYVAK 287

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
            +G+    +L  L  L +   R E+    + G  I  D Y     +++++L+    I
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLVLETFSAI 343


>gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
 gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
          Length = 462

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 150/372 (40%), Gaps = 34/372 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N +S D+R ++ G +FVA+  ++ DGH +I  A   GA A +VS      D       N 
Sbjct: 24  NGISIDTRTLKMGDLFVAL-KDQRDGHEYIKIAFENGAAAALVSRVPDGLD------ENL 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+    L   A     +    ++ +TG+ GK+S    ++ I   +G         
Sbjct: 77  PLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKTSTKEMLKSILIANG--------K 128

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGS 208
           +  +  + +N      P+ LA+       +      +E   +  D+ R      KL    
Sbjct: 129 THAAERSYNNHWGV--PLTLARM-----PKETDFAVIEIGMNNPDEIRPLAKLAKLDVAI 181

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H+   +  +    AK  +FE  L   + AI+ +D +    ++        +++
Sbjct: 182 VLNVAPVHLKAFKNIEGIAYAKAEIFEN-LSSSNIAIVNSDLSTFDILLNTVQKVRSKLI 240

Query: 269 SVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G+     + L       NK  VT  +   DF+F F   G+    NA+       A+GI
Sbjct: 241 TFGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVFAAAEAVGI 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEM-----ILKNIRTITS 381
           +   +           GR +        G+I  +D ++ +N + M     +L   ++  S
Sbjct: 301 ERKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVLS--QSEAS 358

Query: 382 GRIIVVFGCGGD 393
           GR + + G  G+
Sbjct: 359 GRKVAILGDMGE 370


>gi|169343255|ref|ZP_02864266.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
 gi|169298553|gb|EDS80634.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
          Length = 457

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 54  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKNIN-HIKDTFKQ 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +   + K   T 
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   RI+ VF
Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVF 360


>gi|110802264|ref|YP_699749.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           SM101]
 gi|123047139|sp|Q0SQ58|MURC_CLOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110682765|gb|ABG86135.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens
           SM101]
          Length = 457

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 132/338 (39%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 54  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F +L+P +   I  ADD   K+VM+    A C VL+ G     I  + +   + K   T 
Sbjct: 208 FVKLIPNDGYIIGNADD---KKVMEVLEVAKCNVLTYGINNGDIQARNI-EFNEKGCATF 263

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   +I+ VF
Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360


>gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acidiphilium cryptum JF-5]
 gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium cryptum JF-5]
          Length = 451

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 31/249 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     VS DSR I  G +FVA+  +  DGH F+P A A+GA  ++V+     +D  A  
Sbjct: 22  EADATGVSIDSRTIAPGELFVALA-DARDGHDFVPDAEAKGAACVLVA-----RDVGA-- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L+V++ +  L+        +    ++AVTG+ GKS+    +++I     LS+F 
Sbjct: 74  ---GPALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRI-----LSAF- 124

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
            G T +  +SF  +N +  P        L+ L ++    V     +H  +   L  I + 
Sbjct: 125 -GATHAAEASF--NNHIGVP------LTLARLPAEADFAVVEIGMNHPGEIAPLSAITRP 175

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  T +G  H+    + +A  + K  L   ++P    A +     +   + +RA + G
Sbjct: 176 HVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVP--GGAAVLPRGPFLSRLARRARD-G 232

Query: 265 CRVLSVGYQ 273
            RV+S G Q
Sbjct: 233 VRVVSFGAQ 241


>gi|254292767|ref|YP_003058790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hirschia
           baltica ATCC 49814]
 gi|254041298|gb|ACT58093.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hirschia baltica
           ATCC 49814]
          Length = 474

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 32/257 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT+GKS+  + +  I +R+G    ++G    I     D +    + IY+      
Sbjct: 118 IVGITGTNGKSTTTALIGHILERAG-RDVRVG--GNIGVGVLDLKAMNANSIYV------ 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS+ LD   +D ++     F N+  DH+D H   Q Y  AK R+F  
Sbjct: 169 ----------LELSSYQLDL--IDSLRCDVAVFLNVSPDHLDRHGGMQGYVAAKNRIFRN 216

Query: 237 LLPKESPAIIYADDAYSKEVMKR--AHNAG--CRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
               ++ A+I  DD  ++ +  R  A N    C V +    G+ +  L+ + +       
Sbjct: 217 QTSADT-AVIGVDDMRTQILCTRLAAENTRRVCPVSAEMALGRGVSVLEGMLSDSLSGHA 275

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             SV   D      LPG+    NA  A   C ++G+D++ +++ L     +  R E VG 
Sbjct: 276 ETSV---DLSSARALPGQHNHQNAAAAYAACQSLGLDASEIIDGLNSFPGLEHRLESVG- 331

Query: 352 NSRGGRIYVDYAHTSNS 368
            S  G  +V+ +  +NS
Sbjct: 332 -SVNGVAFVNDSKATNS 347


>gi|213965279|ref|ZP_03393476.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
 gi|213952131|gb|EEB63516.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
          Length = 497

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 113/295 (38%), Gaps = 53/295 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           L + GT GK+S  S      Q +GL  SF +G    + S A  N       +++A+A   
Sbjct: 126 LLIAGTHGKTSTTSMTVAALQAAGLDPSFAVG---GLMSKAGVNAHQGSGDVFVAEADES 182

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S L+ Q    V+V                      TN+  DH+D+    + Y+ A   
Sbjct: 183 DASLLTYQ--PEVAV---------------------ITNIEPDHLDFFGDDETYY-AVFD 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---------LKKVC 283
            F E +      ++ A+D ++  + +RA   G  VL+ G +              L    
Sbjct: 219 AFAERIKDGGHLVVCAEDPHAAALGERAVERGINVLAYGGEDALAKHPTLPVGAVLHGWT 278

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHV 341
            +    +V  +V      F    PG     NAL A   G C+  G D   +   L +   
Sbjct: 279 PVGGGARVEATVGSTSVRFELHQPGRHMALNALAAMVGGDCV--GADLGRMARGLGEFTG 336

Query: 342 VPGRFEFVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTITS----GRIIVVF 388
           V  RF++ G+   G     RIY DYAH    +  +L   R + +    G +I VF
Sbjct: 337 VRRRFDYHGSIGEGPFVGARIYDDYAHHPTEVSAVLGAARELVTEAGRGNVIAVF 391


>gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
 gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
          Length = 481

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 163/417 (39%), Gaps = 67/417 (16%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS---AYSLQDF 82
           ++ K+  V +DSR ++ G IFV + G   DGH ++ QA   GA  I+V+    A  ++  
Sbjct: 27  QDGKMFNVVTDSRDVKKGCIFVCLKGEFHDGHDYVRQAAEDGAGIIIVNEDKKADVMKAI 86

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 NT ++ V      +   A           + +TG+ GK++V   V  +   S +
Sbjct: 87  DDARAMNTSVISVKAPLYAMGELAKWYISYLGVKTIGITGSVGKTTVKDMVASVLP-SAM 145

Query: 143 SSFQ--------IGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHG 193
           ++++        IG   T  S  +D  L        AK  +  LS      V++      
Sbjct: 146 NTYKTKGNFNSLIGLPLTALSMPRDTSLCVFELGMDAKGEIDRLSEIIAPDVAI------ 199

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                           T +G  H++   +++  F AK  +   + P     +I   D   
Sbjct: 200 ---------------ITKIGVSHVERLGSRENIFRAKSEIVNHIKP--GGTLILGVDEDE 242

Query: 254 KEVMKRAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF------LF 304
           + + K        V+ V    Y G  +     C     + V   +EG  F+F        
Sbjct: 243 QYLKKENFTGNFNVIEVTAKHYAG--VDSNTYCV----ENVRDDMEGIRFEFSGGGYEKI 296

Query: 305 PLP-GEFQVYNALVAAGLCIAIG----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           P+      ++NAL  AGL IA G    ID   + E L+ ++    R E      +GG  +
Sbjct: 297 PVTINTHGIHNAL-NAGLAIACGLQFDIDLESIKEGLKNVNFTAKRLEI---KEKGGITF 352

Query: 360 VD--YAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLA 410
           +D  Y  +  S+   L+ +  I+ GR++ V G     G D +   + I G++  DL 
Sbjct: 353 IDDSYNASPESMSSALRVLSQISKGRMVAVLGDMNELGKDSEDFHKRI-GRLVFDLG 408


>gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
 gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
          Length = 457

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 36/357 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +N++  DSR I AG +F+ + G + DGH FI  A   GA A              
Sbjct: 21  YKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKE-------- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++   ++VD+T +     A+    K   +++AVTG++GK++    +  I   +  + 
Sbjct: 72  -LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G          +N +  P   Y A  +   + + V  +      H  D H L  + K
Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSNLAK 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+++  ++      KM++ ++ +P  S  ++  D      ++     +
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPCD-----PIVDLFLPS 230

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+  G  G  + + ++     K  +T S +  D     P+ G++   NA+VAA +  
Sbjct: 231 NLEVVRFG-DGAELTVSELTEY--KDHLTFSTKFLDGQVTLPVTGKYNATNAMVAAYVAK 287

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
            +G+    +L  L  L +   R E+    + G  I  D Y     +++++L+    I
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLVLETFSAI 343


>gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis]
          Length = 446

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 139/372 (37%), Gaps = 60/372 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  + G +FVA  G   DGH +  +A   GA A++ S   SL           P +VV
Sbjct: 31  DSRQAEPGGLFVAFAGEHADGHDYAERAGRAGAVAVLGSRPTSL-----------PTVVV 79

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152
           ++ R  L   A+ +  +  +   ++ VTG+ GK+     +  +   +       GPT +T
Sbjct: 80  EDVRTALQTLAAHVVARLRDGLTVVGVTGSQGKTGTKDLLAAVLSGA-------GPTVAT 132

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIAGSFT 210
             S   +N L  P        L+ L +Q  T   V    + H  D   L G  L+A    
Sbjct: 133 TGSL--NNELGVP--------LTMLRAQAATRFLVLEMGARHEGDIAELTG--LVAPDIA 180

Query: 211 ---NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMK------- 258
              N+G  H+    ++ A   AK  L + L+P  + A++ ADD    S  V+        
Sbjct: 181 VVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGT-AVLNADDPRVASMSVLTDGPVLTF 239

Query: 259 -RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            R   A  +VL V           V     +   T+           PL G  Q  NA  
Sbjct: 240 GRTDPADVQVLDV-----------VLDRLGRPSCTLRTVDTSARLALPLVGAHQALNASA 288

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           AA   +A G+   L    L    + P R E          +   Y    +S    L  + 
Sbjct: 289 AAAAALAAGVPLDLATTALTTASLSPWRMELRDLACGATLLNDSYNANPDSTRAALDALS 348

Query: 378 TITSGRIIVVFG 389
            I  GR I V G
Sbjct: 349 AIEGGRRIAVLG 360


>gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 455

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 8/109 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR I  G +FVA+ G + DGH ++ +  A+GA A +V    +         S  P 
Sbjct: 28  VSIDSRAIAPGQLFVALAGPRFDGHDYLNEVAAKGAVAALVEREVT--------NSTLPQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           L+V++TR+ L    +     +   + A+TG+SGK++V   +  I +  G
Sbjct: 80  LLVNDTRQALGQLGALNRAAYGNPVAAITGSSGKTTVKEMLASILRTRG 128


>gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus ND03]
          Length = 457

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 36/357 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +N++  DSR I AG +F+ + G + DGH FI  A   GA A              
Sbjct: 21  YKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKE-------- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++   ++VD+T +     A+    K   +++AVTG++GK++    +  I   +  + 
Sbjct: 72  -LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G          +N +  P   Y A  +   + + V  +      H  D H L  + K
Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSNLAK 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+++  ++      KM++ ++ +P  S  ++  D      ++     +
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPCD-----PIVDPFLPS 230

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+  G  G  + + ++     K  +T S +  D     P+ G++   NA+VAA +  
Sbjct: 231 NLEVVRFG-DGAELTVSELTEY--KDHLTFSTKFLDGQVTLPVTGKYNATNAMVAAYVAK 287

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
            +G+    +L  L  L +   R E+    + G  I  D Y     +++++L+    I
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLVLETFSAI 343


>gi|182420305|ref|ZP_02951534.1| cyanophycin synthetase [Clostridium butyricum 5521]
 gi|237666435|ref|ZP_04526420.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182375900|gb|EDT73492.1| cyanophycin synthetase [Clostridium butyricum 5521]
 gi|237657634|gb|EEP55189.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 869

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 162/387 (41%), Gaps = 42/387 (10%)

Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           LY   P NI  ++VTGT+GK++    +  + +  G+++   G TST   +  D  +    
Sbjct: 470 LYEGRPSNIPVISVTGTNGKTTTTRMIGHVLKMMGMTT---GITSTDGIYINDKCIHKGD 526

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQ 224
                 A + L ++ V  V +E +  GL +  L          TN+  DH+  D   + +
Sbjct: 527 DSGFNSAKTLLLNRDVEAVVLETARGGLVRRGLAYDLADVAVITNITNDHLGLDGIDSME 586

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVGY 272
                K  + EE+  K    +I ADD YSK ++ R                    ++ G 
Sbjct: 587 DLMFVKSLVGEEV-KKNGYTVINADDKYSKRILDRISCEKIYFSKSKDNELIKENINNGK 645

Query: 273 QGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              FI    +C I+N ++ + IS++     +   L   + + NA+ A    + + ID  +
Sbjct: 646 IAVFIEDNNICVINNHRKYLIISIDELPISYNGILT--YNIENAMAACAALVGLNIDYCM 703

Query: 332 VLEHLEKLHVV---PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVV 387
           + +            GRF       R  ++ +DY H     + +L  I  + T  R+I V
Sbjct: 704 ISKGFSDFMPCDDNEGRFNMFEYYGR--KVILDYGHNIEGYKAVLSCINKLKTKNRLIGV 761

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKIRAEII-----HGIP 437
            G  GDR       +G+I  +  D  I+ +D  R      E  + ++  I+       + 
Sbjct: 762 VGVPGDRQDNVIKEIGEICCEYLDEIIIKEDKDRRGRSIGEVSQLLKISILKNSNKKNVK 821

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++++   ++A+  AI++  K D+++V
Sbjct: 822 VYLDE---VDALEYAIKISKKDDIIIV 845


>gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMD-9]
 gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus LMD-9]
          Length = 457

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 36/357 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +N++  DSR I AG +F+ + G + DGH FI  A   GA A              
Sbjct: 21  YKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKE-------- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++   ++VD+T +     A+    K   +++AVTG++GK++    +  I   +  + 
Sbjct: 72  -LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G          +N +  P   Y A  +   + + V  +      H  D H L  + K
Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSNLAK 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+++  ++      KM++ ++ +P  S  ++  D      ++     +
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPCD-----PIVDPFLPS 230

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+  G  G  + + ++     K  +T S +  D     P+ G++   NA+VAA +  
Sbjct: 231 NLEVVRFG-DGAELTVSELTEY--KDHLTFSTKFLDGQVTLPVTGKYNATNAMVAAYVAK 287

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
            +G+    +L  L  L +   R E+    + G  I  D Y     +++++L+    I
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLVLETFSAI 343


>gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Micromonospora sp. L5]
 gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora sp. L5]
          Length = 469

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 153/381 (40%), Gaps = 60/381 (15%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R    V  DSR +  G +FVA  G + DGH +   AI+ GA A++ +             
Sbjct: 25  RVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGAISAGAVAVLGTREV---------- 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              P+++V +    +   A  +  + P   ++ +TG+SGK++    + Q+  R       
Sbjct: 75  PGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSGKTTTKDLIAQLAVR------- 127

Query: 147 IGPT-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLD 200
           +GPT +   SF  +N L  P + +       YL     ++GV HV          ++  D
Sbjct: 128 LGPTVAPPGSF--NNELGHPYTALQATPETRYLVMEKGARGVGHV----------RYLCD 175

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +        N+G  H+    + +    AK  L E  LP +  A++ ADD     +  R 
Sbjct: 176 VVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEA-LPDDGLAVLNADDPRVDAMASRT 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP---------LPGEF 310
                RV+  G + +   ++ V        VT+   G+  +  + P         L G  
Sbjct: 235 R---ARVVRYG-ESEHADVRAV-------DVTLDGRGRPSYTLVTPEGSAPVRLGLTGRH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
           QV N+L AA +   +G+    +   L +L +V  R   V     G  +  D Y     S 
Sbjct: 284 QVSNSLAAAAVGRELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVIDDSYNANPAST 343

Query: 370 EMILKNIRTITS-GRIIVVFG 389
            + L+ + ++   GR + V G
Sbjct: 344 GVALRALASMRGEGRTVAVLG 364


>gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
 gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27]
 gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma
           whipplei TW08/27]
 gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
          Length = 464

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 145/348 (41%), Gaps = 66/348 (18%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S+ P+  R      +  DSR+I  G IFVA  G K DGH F+ QA   GA   +V+    
Sbjct: 24  SLLPINGR------LKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQSGASLAIVTRVQE 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +         + P L+V N  + +   A       +    ++ +TG++GK++  S +  +
Sbjct: 78  I---------DLPQLLVGNVTEAMHAIAGFKLCLSRDTITVIGITGSNGKTTTKSVLAYV 128

Query: 137 CQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             + G         +T+++   Q+N +  P  +   + L+        ++ +E  +    
Sbjct: 129 LSKFG---------NTVATHGNQNNEIGFPITVSRIEPLT-------KYLVLEYGA--FK 170

Query: 196 QHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              +D +K IA        + G  H++   + ++  + K  L  + LP+ S  ++  DD 
Sbjct: 171 PGDIDCLKKIAVPDIAVLLSAGHAHVEKSGSLESVCSMKAELARD-LPEGSKVLLNYDDP 229

Query: 252 ----------YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                     Y     KRAH     V +   + +F        I   Q+ ++ VE K   
Sbjct: 230 RIARLSVGNRYYFGTDKRAHFRASHVETNIIKTRF--------IVTYQKGSVEVETK--- 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               L G+ QV N L A    + +G D+ +   ++ +++ + GR +++
Sbjct: 279 ----LIGKHQVSNVLAALSTLVLLGFDAEVCARYISEVNPIDGRMQYI 322


>gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 495

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 12/112 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R ++ G +FVA+ G+  DGH ++ +A  +GA A +VS           + ++ P+
Sbjct: 36  VSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARAALVSRP---------VEASGPL 86

Query: 93  LVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQQICQRSG 141
           L+V +TR  L   A  +  K     + ++ +TGT+GK++    +  +  R G
Sbjct: 87  LIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSREG 138


>gi|89255606|ref|YP_512967.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|156501556|ref|YP_001427621.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010129|ref|ZP_02275060.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367001|ref|ZP_04983037.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|290953734|ref|ZP_06558355.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312920|ref|ZP_06803641.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|109892705|sp|Q2A5N4|MURC_FRATH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224689|sp|A7N9L2|MURC_FRATF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89143437|emb|CAJ78613.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|134252827|gb|EBA51921.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252159|gb|ABU60665.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 451

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 145/367 (39%), Gaps = 42/367 (11%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA+TGT GK++ +S +  + CQ    SSF +G    +  +A  N                
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L    +I    TN+  DH+    T    +   +  F +
Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            + KES   IY   DD   ++++ + + +   V S G+     + +     I       I
Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      
Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIITCLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            G ++ V  DY H    +   +  +R    + +II VF     R    R ++     AL 
Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378

Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           LAD  I+      S D + I+     +I+ G+ G++       AI    ++ N+  V+++
Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILI 436

Query: 465 AGKGHET 471
            G G  T
Sbjct: 437 QGAGDVT 443


>gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
 gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
          Length = 826

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 165/369 (44%), Gaps = 36/369 (9%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++  I+ V +DSR +      +F A+   + DGH +IP+  A+G    VV      +D+ 
Sbjct: 20  KDANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIPELYARGVRNFVVEVV--PEDW- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           AT   ++  L V  + + L   A R   ++   I+ +TG++GK+ V  ++ Q      L 
Sbjct: 77  ATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSNGKTMVKEWLYQ------LL 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           S Q+  T +  S+  ++++  P  + L   L+  +  GV    +  S  G      D I+
Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVLL---LNENTQVGVFEAGI--SQPGEMMALRDIIQ 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHN 262
              G FT LG  H +   + +A  + K++LF      ++ AI+Y AD+    + + +   
Sbjct: 184 PTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH-----DTEAIVYSADNEVMAQCLSQYDY 238

Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGK---DFDFLFPLPGEFQVYNALV 317
            G ++  SV       ++K   AI  K  + T+S   K   +  +  P   +  V N++ 
Sbjct: 239 KGQKLDWSVKNTEAAFYIK---AIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVKNSIT 295

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK-- 374
            A + + +G+  A + E + +L  V  R E V     G  +  D Y    NSL++ L   
Sbjct: 296 CAVVSLHLGLTPATISERMAQLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIALDFM 354

Query: 375 NIRTITSGR 383
           N R    GR
Sbjct: 355 NRRPDHKGR 363


>gi|237749171|ref|ZP_04579651.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
 gi|229380533|gb|EEO30624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
          Length = 495

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 78/335 (23%)

Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           + +FA  L G      +  +++AVTGT+GK++V S    +C+R+G +    G    IS  
Sbjct: 101 IEMFAQALKGLEEGTAYKPDVIAVTGTNGKTTVTSLTGHMCERAGKTVRLAG---NISPA 157

Query: 157 AQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           A D  L       L     L   S Q  T  +++A+               A +  NL +
Sbjct: 158 ALDVLLDVIEKKQLPDVWVLELSSFQLFTTYTLQAN---------------AATVLNLTQ 202

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D+H + +AY  AK R+F E    ++  ++  +DA    VMK A +A   V++ G   
Sbjct: 203 DHLDWHGSMEAYGEAKARIFGE----KTVRVLNREDA---AVMKMA-SADAPVVTFGTDE 254

Query: 275 KF------IHLKK---VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL---- 321
                   +HL +     A+ +  +  I    K  D     P E+ V N + A  L    
Sbjct: 255 PLEPSSFGLHLDRDMEWLAVMSPVEDGIVRRNKKND----APLEYAVQNLMPAGALKIRG 310

Query: 322 -------------CIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYV 360
                        C AI +  A +L+ L      P R E + T        +S+G  +  
Sbjct: 311 RHNASNALAALALCRAIHLPFAPLLQALSDYRGEPHRVELIATVKTVSYIDDSKGTNVGA 370

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             A  +   E   KNI       I++  G G D+D
Sbjct: 371 TVAAVNGLGEKGRKNI-------ILIAGGLGKDQD 398


>gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 475

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           ++DSR +  G IF A  G   DGHLF+PQA+  GA  +VV     +           P L
Sbjct: 35  TTDSREVVPGSIFFAKPGETTDGHLFVPQALDSGAALVVVDRELDVAG---------PQL 85

Query: 94  VVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           VV++T   L   A    +R+       I+ +TG++GK++  + ++ I ++SG
Sbjct: 86  VVEDTVVALGELAADVIARVRALGNLRIVGITGSNGKTTTKNLLRAILEQSG 137


>gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
 gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
          Length = 425

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 177/409 (43%), Gaps = 53/409 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I+   +F A+ G+  +G+ +  +A+ +GA       +YS+ D      S+  I
Sbjct: 16  VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGA-------SYSIVDEEKYATSDKTI 68

Query: 93  LVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LV D   T + L+ F    Y      ++ +TG++GK++    V  +     LSS +    
Sbjct: 69  LVKDVLQTLQKLATFHRNFYSAK---VIGLTGSNGKTTTKELVNAV-----LSS-KYKTI 119

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIA-- 206
           +TI +   +N +  P        L+ L+ +  T +++    ++H   Q  ++ +  +A  
Sbjct: 120 ATIGNL--NNHIGVP--------LTLLTIKEDTEIAIVEMGANH---QKEIEFLCSLAQP 166

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN G+ H++   + +     K  L++ LL  +    + ADD    + +      G
Sbjct: 167 DYGYITNFGKAHLEGFGSVEGVIEGKSELYDYLLANQKSIFLNADDPIQHKKL------G 220

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +   G+        K+  + +   V++SVE  D +    L G +   N   A  +   
Sbjct: 221 HYIKKYGFTTAKKEYFKIKFLISDPYVSLSVE--DIEINSKLIGNYNFTNCCAAVLMGKY 278

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
             ++   +   +E       R + + +N  G RI +D Y     S+++ L+N  +++   
Sbjct: 279 FNVELNDIKTAIESYIPQNNRSQIIESN--GTRIILDAYNANPTSMKVALENFNSLSGEP 336

Query: 384 IIVVFG----CGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEK 427
            I   G     G   ++  + I     +LD++++ +V D+  R++ P K
Sbjct: 337 KIAFLGDMFELGATSNEEHQNIADLTSSLDISEVFLVGDNFYRTKTPLK 385


>gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 504

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 31/244 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----------QDF 82
           V  DSR + AG +F+A+ G + DGH +   AI QGA A++ +    +           D 
Sbjct: 31  VEFDSRQVTAGGLFLALPGARVDGHEYATTAIGQGAVAVLAARPVDVPSIIVPPVTPTDS 90

Query: 83  SATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           +A I ++ P      V++   K          G H   ++A+TG++GK+S   F+  +  
Sbjct: 91  NADIYAHDPEGHGAAVIEALSKLARHVVDLAVGAHDLTVVALTGSAGKTSTKDFIATVLS 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G +    G  +            T    YL   ++ +S++G+ H++  A        R
Sbjct: 151 MAGDTVAPPGSFNNEVGLPHTALRCTTHTRYL---VAEMSARGIGHIAHLA--------R 199

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKE 255
           +   ++  G+  N+G  H+    ++     AK  L E  LP  +    A++ ADD +   
Sbjct: 200 ITPPRI--GAVLNVGSAHLGEFGSRANIAQAKGELVEA-LPAAADGGVAVLNADDPFVAA 256

Query: 256 VMKR 259
           +  R
Sbjct: 257 MAPR 260


>gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
 gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
          Length = 256

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 24/227 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E++I  V+ DSR    G++FV + G + DGH FIPQ + QGA A +       +D S+
Sbjct: 23  FLEKEITGVAIDSRKAAPGFLFVPLKGARVDGHTFIPQVMEQGALATLTE-----EDPSS 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P + V++  K L   A+    +    ++ +TG+ GK+S    +  +  R     
Sbjct: 78  L---TCPCIHVESCEKALRDIAAFYRMQLDIKVVGITGSVGKTSTKETIASVLSR----- 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
            +     T  +F  +N +  P  I+       L+ +    V      H  + H L  I +
Sbjct: 130 -KYNVLKTEGNF--NNGIGLPLTIF------NLTEEHEVAVLEMGIDHFGEMHELASISQ 180

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 TN+G  H++   ++     AK  +F+ L P  S  I+  DD
Sbjct: 181 PDICVITNIGLAHMENLGSRDGILKAKTEVFDHLRPNAS-VILNGDD 226


>gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
 gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
          Length = 470

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 13/122 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V  DSR +  G +FV I G + DGH F  +A+ +GA A++     +       +   
Sbjct: 26  IEAVRIDSRAVTPGCLFVCIPGERFDGHNFAAEAVGKGAAAVLADRPLT------GLPDG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           TP+L+V +T   L   A     +    ++ VTG++GK++V      I  +       +GP
Sbjct: 80  TPVLLVRDTVAALGFLAKAWRTQVGARLVGVTGSAGKTTVKELTAAILGK-------LGP 132

Query: 150 TS 151
           T+
Sbjct: 133 TA 134


>gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2]
          Length = 471

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +  ++ +++ VS+D+R I +G +++A+ G   +GH F   A   GA AI+ S        
Sbjct: 17  LDGQDCEVSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAENAGASAIIASEP------ 70

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              +  + P++ V++T+  L L  + +  +     +A+TG+SGK++V      I +R G
Sbjct: 71  ---VNVSIPVVYVEDTKLALGLLGAAVKREIAPKTIAITGSSGKTTVKEMCAAILERRG 126


>gi|319778483|ref|YP_004129396.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
 gi|317108507|gb|ADU91253.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
          Length = 472

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 169/429 (39%), Gaps = 64/429 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+AIVVS+A S  +       +  I VV        L   RL     ++ +AV GT GK
Sbjct: 64  GADAIVVSTAVSQGNPEVLKARSLHIPVVPRAIMLAELM--RL-----KSGIAVAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  +    GL  +F IG    ++S   + +L T                   ++
Sbjct: 117 TTTTSLVASVLATGGLDPTFVIG--GRLNSAGANAKLGTGD-----------------YI 157

Query: 186 SVEAS-SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            VEA  S     H    I +I    TN+  DH+D +    A        F + LP    A
Sbjct: 158 VVEADESDASFLHLFPTIAII----TNIDSDHMDTYGHDVAKLRGAFVEFAQRLPFYGSA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDF 300
           II  DD   + +M       C   + G   +  H + +   +N  ++   V    +GK+ 
Sbjct: 214 IICTDDENVRNIMPFI---SCSSTTYGLNEQ-AHFRAINIENNGTRMEFDVIRKYQGKEL 269

Query: 301 DFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-----TN 352
             L     +PG+  V NAL A  +   +G+  + + + L + + V  RF  VG      N
Sbjct: 270 PQLHISLNIPGQHNVLNALAAIAVGTEVGVADSDIEKALSEFNGVSRRFTQVGDFDVIQN 329

Query: 353 SRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
           + GG+  V  DY H    ++  ++  R     R + VF     R    R         L 
Sbjct: 330 NGGGKFTVIDDYGHHPVEMDATIQAARGAWPTRRL-VFAFQPHRYTRTRDCFEDFVNVLG 388

Query: 409 LADIAIVTDDNPRSEDP-------EKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQ 459
            AD  I+++  P  E P          RA  + G   P F+E  N +   +  +++    
Sbjct: 389 KADAVILSEVYPAGESPIVAADGRALARALRVAGHVEPIFVEDINDMP--KAILKIAKDG 446

Query: 460 DVLVVAGKG 468
           DV++ +G G
Sbjct: 447 DVVICSGAG 455


>gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
 gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
          Length = 481

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ Y    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGYFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHIVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSIRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|225021927|ref|ZP_03711119.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945314|gb|EEG26523.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 477

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 147/378 (38%), Gaps = 54/378 (14%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           + GT GK+S  S      Q +G+  SF IG         Q N+  T +            
Sbjct: 116 IAGTHGKTSTTSMAVVAMQAAGMDPSFAIG--------GQLNKAGTNA------------ 155

Query: 179 SQGVTHVSV---EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            QG  H  V   + S   L ++  D I ++    TN+  DH+D+  T +AYF      F 
Sbjct: 156 HQGSGHCFVAEADESDASLLRYSPD-IAVV----TNIEPDHLDFFHTPEAYFQV-FDDFA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----------FIHLKKVCAI 285
             L      ++  DD ++  + +R      +V   GY             +  ++ V   
Sbjct: 210 ARLTDTGVLVVCLDDEHAAALGERQKT---KVTVRGYGSAAAAERHPDIAYTVVESVAVA 266

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                  + V  ++ +    +PG   V NA  A    +  G D A + + + +   V  R
Sbjct: 267 DQISHAHMRVGEREVEVAMQIPGTHMVLNAAAALTAGVLAGGDVAALAQGISEFSGVRRR 326

Query: 346 FEFVGT----NSRGGRIYVDYAHTSNSLEMILKNIR----TITSGRIIVVFGCGGDRDQG 397
           FEF G     + RG  +Y DYAH    +  +L   R       SG++IVVF         
Sbjct: 327 FEFHGAVAGGDYRGVEVYDDYAHHPTEVRAVLTAAREKLAARGSGQVIVVFQPHMYSRTQ 386

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII--HGIPGFIEKGNRIEAIRTAIE 454
           +       AL LAD A+V D     E P + I +++I        + + N     +T  E
Sbjct: 387 EFAAEFAEALSLADAAVVLDIYGAREQPHDGITSQLIIDRMTNKVVHQPNFSLVPQTVAE 446

Query: 455 MLNKQDVLVVAGKGHETV 472
           + +  D+++  G G  TV
Sbjct: 447 LAHPGDMVITMGAGDVTV 464


>gi|50842246|ref|YP_055473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
 gi|59798222|sp|Q6A9Q1|MURC_PROAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50839848|gb|AAT82515.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
          Length = 471

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVYGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L   L   R + + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415


>gi|323699056|ref|ZP_08110968.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. ND132]
 gi|323458988|gb|EGB14853.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           ND132]
          Length = 483

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 134/318 (42%), Gaps = 44/318 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S +  I   +GL      PT  I       RL T    Y A A    
Sbjct: 125 IAVAGTHGKTTTTSLLATIFTEAGLD-----PTVIIGG-----RLNT----YGANARL-- 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  ++  EA        RL  I  +    TN+ +DH+D++  Q A   + MR F   
Sbjct: 169 -GEG-DYLIAEADESDGSFLRLAPIITVV---TNIDKDHMDFYDNQDAIDLSFMR-FMNS 222

Query: 238 LPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            P     ++  DD   + ++   KR +        +G Q K     ++ + H +    + 
Sbjct: 223 TPFYGMNVVCGDDEGVQRLLPLIKRPY----LTYGLGKQNKL--RGEIVSSHLRSLFKVW 276

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+++ +     PG   V NAL   G+ + +G+D   +++ L     V  RFE  G   
Sbjct: 277 LDGEEWGEVTVAQPGTHNVLNALACIGVALEVGLDKEEIIQGLGNFGGVGRRFERKG-EK 335

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI--AL 407
           +G  +  DY H       I+ N+RT        R++V F     R    + + G+   A 
Sbjct: 336 KGVIVVDDYGHHPAE---IMANLRTAKECYPDRRLVVAFQP--HRFSRTKALFGEFCKAF 390

Query: 408 DLADIAIVTDDNPRSEDP 425
             ADI ++T+  P SE P
Sbjct: 391 GDADILLLTEIYPASESP 408


>gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
          Length = 448

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 152/364 (41%), Gaps = 48/364 (13%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S DSR ++   IF+AI G   DG  +I  AI +G+  I+ SS           +SN  I 
Sbjct: 32  SIDSRTLRKNEIFIAIQGENFDGSNYIDVAIKKGSSWIITSSKNH--------KSNRCIY 83

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V NT++ L   AS L G+    I+A+TG++GK++    V  I        +Q  P + I
Sbjct: 84  -VKNTKETLCKIASYLVGEVSPKIIAITGSNGKTTTKEMVANIL-------YQHYPKNEI 135

Query: 154 --SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----G 207
             +    +N +  P  ++  K       +  T V +E   +   Q  +  +  IA     
Sbjct: 136 LVTKGNLNNDIGLPLTLFNLK-------KNHTIVVLEMGMN--HQDEITKLCKIAPPDIA 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAG 264
             TN+G  H++   ++     AK    +E+L    K   AI+  DD Y   +  ++    
Sbjct: 187 VITNIGEAHLENFSSKNGIAKAK----KEILLGAKKNGIAILPRDDVYFNYL--KSDCLY 240

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            R +S G  +   I L     +    +  I++E         L G+  + N   A  +  
Sbjct: 241 LRCISFGINKNSNIRLDLSSKVLTVDEEKINIES-------SLLGKENLMNMAAAVSVAN 293

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+ + +  +++ ++ +  + GR E   T S    I   Y    +S+ M +  +      +
Sbjct: 294 ALELPTETIIKGMKTIDSIEGRLEVKITASNIKIIDDTYNSNPSSMMMAIDVLDQFKQKK 353

Query: 384 IIVV 387
           I++V
Sbjct: 354 ILIV 357


>gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 553

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 30/239 (12%)

Query: 26  RERKINEV----SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           R+  +N V    S+DSR I+    F A+ G   DGH F+ +A+  GA A+VVS     + 
Sbjct: 26  RKEAMNYVLLGTSTDSRTIKRCEAFFALKGENFDGHAFVERAVRAGAVALVVSDLKCAEL 85

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           + A +    P ++V++T   L   A+     +   ++A+TG+ GK+S    +        
Sbjct: 86  WQAEL----PTILVEDTLTALQKLAAYYRQNYLHTLVAITGSVGKTSTREMI-------- 133

Query: 142 LSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQH 197
             +  + PT  +S   +  +N +  P  +   ++   ++    G+ H         L Q 
Sbjct: 134 --AAALRPTLAVSCTGENLNNEIGVPQTVLKVRSACDVAVVEMGMDHAGDLTKLSRLAQP 191

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            +  I       TN+G  HI+   +Q A   AK  +    L  +   ++ ADD + +++
Sbjct: 192 DIAVI-------TNIGYCHIEQLGSQMAIMRAKAEIING-LKADGVLLLNADDPFLRQL 242


>gi|313791784|gb|EFS39895.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA1]
 gi|313802129|gb|EFS43361.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA2]
 gi|313838461|gb|EFS76175.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL086PA1]
 gi|314963082|gb|EFT07182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA1]
 gi|315077546|gb|EFT49604.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA2]
 gi|327452866|gb|EGE99520.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL092PA1]
          Length = 471

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L   L   R + + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415


>gi|289426296|ref|ZP_06428042.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289426882|ref|ZP_06428608.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|295130334|ref|YP_003580997.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|289153461|gb|EFD02176.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289159971|gb|EFD08149.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|291375983|gb|ADD99837.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|313764734|gb|EFS36098.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA1]
 gi|313772516|gb|EFS38482.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL074PA1]
 gi|313807246|gb|EFS45733.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA2]
 gi|313809752|gb|EFS47473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA1]
 gi|313815799|gb|EFS53513.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA1]
 gi|313818292|gb|EFS56006.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA2]
 gi|313820054|gb|EFS57768.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA1]
 gi|313823137|gb|EFS60851.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA2]
 gi|313825586|gb|EFS63300.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA1]
 gi|313827825|gb|EFS65539.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA2]
 gi|313830661|gb|EFS68375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL007PA1]
 gi|313833881|gb|EFS71595.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL056PA1]
 gi|314915225|gb|EFS79056.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA4]
 gi|314918546|gb|EFS82377.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA1]
 gi|314919809|gb|EFS83640.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA3]
 gi|314925476|gb|EFS89307.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA3]
 gi|314931824|gb|EFS95655.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL067PA1]
 gi|314955980|gb|EFT00378.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA1]
 gi|314958375|gb|EFT02478.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA1]
 gi|314960273|gb|EFT04375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA2]
 gi|314968083|gb|EFT12182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA1]
 gi|314973663|gb|EFT17759.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA1]
 gi|314976256|gb|EFT20351.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL045PA1]
 gi|314983535|gb|EFT27627.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA1]
 gi|314987723|gb|EFT31814.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA2]
 gi|314990202|gb|EFT34293.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA3]
 gi|315085925|gb|EFT57901.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA3]
 gi|315096283|gb|EFT68259.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL038PA1]
 gi|315098266|gb|EFT70242.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA2]
 gi|315101043|gb|EFT73019.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA1]
 gi|315108235|gb|EFT80211.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL030PA2]
 gi|327325919|gb|EGE67709.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA2]
 gi|327332208|gb|EGE73945.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA3]
 gi|327442830|gb|EGE89484.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA2]
 gi|327446201|gb|EGE92855.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA2]
 gi|327447816|gb|EGE94470.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA1]
 gi|327451052|gb|EGE97706.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA3]
 gi|327453593|gb|EGF00248.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA2]
 gi|328753085|gb|EGF66701.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA1]
 gi|328753740|gb|EGF67356.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL020PA1]
 gi|328759170|gb|EGF72786.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA2]
 gi|328760584|gb|EGF74152.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL099PA1]
 gi|332675176|gb|AEE71992.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           266]
          Length = 471

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L   L   R + + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415


>gi|315080330|gb|EFT52306.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL078PA1]
          Length = 471

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L   L   R + + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415


>gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 464

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 152/378 (40%), Gaps = 50/378 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +   S+D+R      +F A+ G   D H ++  A+AQG  A+VV     +       
Sbjct: 22  ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVERECEI------- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P LVV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+      +
Sbjct: 75  --DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTACEQE 132

Query: 147 IGPTSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIK 203
           +     + +F   +N L  P + + L +   Y   + G  H+   A +  + Q       
Sbjct: 133 V-----LYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPD----- 182

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRA 260
             A    N+   H++   +      AK  ++   L +   AI+   +    + KE+  R 
Sbjct: 183 --ACLVNNVAAAHLEGFGSLAGVAQAKGEIYRG-LKENGKAIVNLAFYYPQWQKEIDSR- 238

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQ 311
                 + S  Y G         A +  + V + + G  F    P       LP  G+  
Sbjct: 239 -----EMQSFSYIGSD---SDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHN 290

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SL 369
           V NAL A  L +++G     V   LE+  +V GR   V  N     +++D ++ +N  S+
Sbjct: 291 VSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC--LFIDDSYNANVDSM 348

Query: 370 EMILKNIRTITSGRIIVV 387
           +  +  +    + RI  V
Sbjct: 349 KSAISVLENYPAYRIFAV 366


>gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
 gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
          Length = 425

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/366 (20%), Positives = 143/366 (39%), Gaps = 48/366 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           V +D+R I    IF A+ G+  +G+ +  +A+ +GA  A+V    Y++         N  
Sbjct: 16  VCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEKEYAI---------NNK 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+  + L         +    ++ +TG++GK++    ++ + Q+   +   +G   
Sbjct: 67  FILVDDVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNL- 125

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----- 206
                  +N +  P        L+ L+ Q  T +++      +  + L  I  ++     
Sbjct: 126 -------NNHIGVP--------LTLLTIQKDTEIAIVE----MGANHLKEIAFLSSLAEP 166

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN G+ H++   + +     K  L++ L   +    + ADD   +  +      G
Sbjct: 167 DYGYITNFGKAHLEGFGSTEGVIQGKSELYKYLTTNQKHVFLNADDPIQESKL------G 220

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V  +G+     +  K+  +     VTI V  KD      L G +   N   A  +   
Sbjct: 221 TYVKKIGFSSNNSNYFKIELLSADPFVTIKV--KDITITTKLVGAYNFTNCCAAIIMGKY 278

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
             I   L+ E +E       R + +  N  G +I +D Y     S+   L N   I +  
Sbjct: 279 FNIALPLIKEAIEGYTPANNRSQILEQN--GYKIILDAYNANPTSMAAALDNFNGIKAAH 336

Query: 384 IIVVFG 389
            IV  G
Sbjct: 337 KIVFLG 342


>gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
 gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
          Length = 462

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 10/136 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  DF  L N L+    Q   RK+  +++D+R +  G +F+A+ G   DGH FI QA  
Sbjct: 1   MIPMDFDWLANVLAT-DYQGDNRKVININTDTRTLCDGEVFLALKGPNFDGHKFIEQAKQ 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  ++V  A         + ++    VV +TR  L    + +  +     +A+TG+ G
Sbjct: 60  KGAIGVIVDHA---------VDTDIAQFVVADTRIALGTIGTAVMAQVAPKTIAITGSVG 110

Query: 126 KSSVASFVQQICQRSG 141
           K++V      I    G
Sbjct: 111 KTTVKEMCAAILSSKG 126


>gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 511

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 146/386 (37%), Gaps = 59/386 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQ- 80
           V  DSR +  G +F+   G K DGH F  +AI QGA            AIVV     ++ 
Sbjct: 31  VEFDSRKVAPGGLFLCFPGAKVDGHDFAEKAIEQGAVAVLAAREVGVPAIVVQPTGRIEG 90

Query: 81  -----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                D  A     +   VV           ++L  +H  +I+ VTG++GK+S    +  
Sbjct: 91  DGANADIYANDADGSAAAVVRALSDLAHYVTTKLTSEHDLSIIGVTGSAGKTSTKDLIAT 150

Query: 136 ICQRSGLS-----SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           I +  G +     SF  +IG   T      D +       YL   ++ LS++G+ H+   
Sbjct: 151 ILRNDGETVAPPGSFNNEIGHPYTALRCDVDTK-------YL---VAELSARGIGHI--- 197

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAII 246
                  +H  D      G   N+G  H+    +++    AK  L E L  + +   A++
Sbjct: 198 -------KHLTDIATPRIGVVLNVGTAHLGEFGSRENIAIAKGELVESLPDVSEGGVAVL 250

Query: 247 YADDAYSKEVMKRA-------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-K 298
            ADD +   + KR         +A    +   Y    I L  V     +   T+   G K
Sbjct: 251 NADDPFVAAMAKRTTAKVVTYSSANPPAVGADYYATNITLDNVA----RPSFTLHAPGVK 306

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G  QV N+L AA   I  G+    V + L            V T + G  I
Sbjct: 307 PVSVTLQVFGVHQVSNSLAAAAAAIEAGLSVESVADSLSGHRNASAHRMDVHTRADGVTI 366

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGR 383
             D Y    +S+   +  +   TSGR
Sbjct: 367 INDSYNANPDSMRAAIAALGYTTSGR 392


>gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 466

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 152/378 (40%), Gaps = 48/378 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +   S+D+R      +F A+ G   D H ++  A+AQG  A+VV       +     
Sbjct: 22  ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVV-------ERECEC 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P LVV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+      +
Sbjct: 75  EIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTACEQE 134

Query: 147 IGPTSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIK 203
           +     + +F   +N L  P + + L +   Y   + G  H+   A +  + Q       
Sbjct: 135 V-----LYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPD----- 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRA 260
             A    N+   H++   +      AK  ++   L +   AI+   +    + KE+  R 
Sbjct: 185 --ACLVNNVAAAHLEGFGSLAGVAQAKGEIYRG-LKENGKAIVNLAFYYPQWQKEIDSR- 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQ 311
                 + S  Y G         A +  + V + + G  F    P       LP  G+  
Sbjct: 241 -----EMQSFSYIGSD---SDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHN 292

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SL 369
           V NAL A  L +++G     V   LE+  +V GR   V  N     +++D ++ +N  S+
Sbjct: 293 VSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC--LFIDDSYNANVDSM 350

Query: 370 EMILKNIRTITSGRIIVV 387
           +  +  +    + RI  V
Sbjct: 351 KSAISVLENYPAYRIFAV 368


>gi|258423773|ref|ZP_05686659.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
 gi|257846005|gb|EEV70033.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
          Length = 449

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVQPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++    ++     Y    Y +  +  +     + L    Q +   I++K    ++   
Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ I+ E         LPGE  + N L A   CI  G+    +++ L     +  R ++V
Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 455

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 146/371 (39%), Gaps = 36/371 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ I  V  DSR      +F+ + G + DGH F+  A+A GAEA +    +        
Sbjct: 20  EDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHE------G 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + ++ P++ V++    L   A    GK    ++ +TG++GK++    V  +  +     F
Sbjct: 73  MPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSK----RF 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +  T   ++F  +N +  P  I     L    S  +  + +     G   H  + ++  
Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDHPGQLHHLSELVRPD 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +G  HI++  T+    +AKM + + L  KE    IY  D    E  +RA     
Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G++ +          +     T  V G    F  P+ G+  V NAL A  +    
Sbjct: 236 EKSTFGFREEDTVFATTFRSY-MHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITSGR 383
           G +   + + L        R ++     +G  G   +D  + SN        ++ +T+  
Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VKAVTTSF 345

Query: 384 IIVVFGCGGDR 394
             V+   GG R
Sbjct: 346 GQVMVEDGGRR 356


>gi|327330618|gb|EGE72364.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL097PA1]
          Length = 471

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L   L   R + + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415


>gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
 gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
          Length = 460

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 34/328 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R+I +  +F+A+ G + D H F   A   GA+A++VS    ++         
Sbjct: 24  IAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKENGAKALLVSKPLPVE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            P LVV +TR  L +  + L  +  E      +A+TG+ GK++V      I    G    
Sbjct: 75  LPQLVVSDTRIALGMMGAWLKAQMTEKYGLQTVALTGSCGKTTVKEMSAAILANKG---- 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           Q+   +T  +F  D      +P+ L   L          + + A+      +  + +K  
Sbjct: 131 QV--LATAGNFNND----IGAPLTL---LRLTPEYQYAVIELGANHQNEISYTTNLVKPN 181

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAG 264
                N+   H++   + Q    AK  +FE L+   +  I + ++D    + +   H   
Sbjct: 182 VALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINLESNDLALWQPLLADH--- 238

Query: 265 CRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            +VL+     +Q  +   +           T+       D    L G   V NAL AA L
Sbjct: 239 -QVLTFSTDSHQADYFAEEIKITTQGLACFTMCTPIGKIDINLALAGIHNVSNALAAAAL 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +++G   A V   LE +  V GR +  
Sbjct: 298 TVSLGATLADVKAGLETMANVKGRLDIT 325


>gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
 gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
          Length = 455

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           NQ+S    ++ +  +  +  DSR+I  G +F+ + G + DGH FI  A   GA A +   
Sbjct: 16  NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 67

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S       P L+V +  K   + A     K   +++AVTG++GK++    +  
Sbjct: 68  -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 120

Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           I   +       G  + +IG   T+    +D        I L     +L   G  HV  E
Sbjct: 121 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIVLEMGQDHL---GDIHVLSE 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +     + R+  + LI       G  H+++  +++     KM++ + +    S  I+ A
Sbjct: 173 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 217

Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                 D Y   ++  ++  H+   +V  +  +              K  +T      + 
Sbjct: 218 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  I  
Sbjct: 264 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 322

Query: 361 D-YAHTSNSLEMILKNIRTI 379
           D Y     ++ +IL+    I
Sbjct: 323 DVYNANPTAMRLILETFSAI 342


>gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
 gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
          Length = 452

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 139/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPE---- 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
              A    NL   H++   +      AK  +F  L P+   AI+ AD+           S
Sbjct: 178 ---AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+ +     D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQIPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
 gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
          Length = 464

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 9/107 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R      +F A+ G K D H ++ +AI QG  A+VV    ++         N P 
Sbjct: 28  ISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGCVALVVERELAV---------NVPQ 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++V++TR  L   A  L  +     +A+TG+SGK++V     +I Q+
Sbjct: 79  IIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316]
 gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
 gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
          Length = 455

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           NQ+S    ++ +  +  +  DSR+I  G +F+ + G + DGH FI  A   GA A +   
Sbjct: 16  NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 67

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S       P L+V +  K   + A     K   +++AVTG++GK++    +  
Sbjct: 68  -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 120

Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           I   +       G  + +IG   T+    +D        I L     +L   G  HV  E
Sbjct: 121 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIILEMGQDHL---GDIHVLSE 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +     + R+  + LI       G  H+++  +++     KM++ + +    S  I+ A
Sbjct: 173 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 217

Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                 D Y   ++  ++  H+   +V  +  +              K  +T      + 
Sbjct: 218 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  I  
Sbjct: 264 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 322

Query: 361 D-YAHTSNSLEMILKNIRTI 379
           D Y     ++ +IL+    I
Sbjct: 323 DVYNANPTAMRLILETFSAI 342


>gi|296166019|ref|ZP_06848471.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295898640|gb|EFG78194.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 486

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 11/188 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ +  AY        E L P  +  ++  DD  +  + +R    G RVL 
Sbjct: 189 TNIETDHLDFYGSADAYVGVFDAFVERLAPGGA-LVVCVDDPGAAALAERTAELGIRVLR 247

Query: 270 VGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G      H   + +   +       + ++ E         +PG     NAL A    + 
Sbjct: 248 YGSGPGGDHAATLLSWEQQGTEAVAHIQLAGESHPRVMRLSVPGRHMALNALGALLAAVE 307

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI----T 380
           IG     VL+ L     V  RFE VG N+   R++ DYAH    +   L  +RT+     
Sbjct: 308 IGASVDAVLDGLAGFEGVRRRFELVG-NAGSVRVFDDYAHHPTEISATLAAVRTVLEQSG 366

Query: 381 SGRIIVVF 388
            GR +VVF
Sbjct: 367 GGRSLVVF 374


>gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
 gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
          Length = 456

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 34/243 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I  G +FVA+ G + DGH ++ +  A+GA A +V    +         +  P 
Sbjct: 28  VGTDSRTIAPGQLFVALTGPRFDGHDYLAEVAAKGAVAALVEREVA--------NAPLPQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +TR  L    +         + AVTG+SGK+SV   +  I  R+GL+   +     
Sbjct: 80  LLVADTRLALGQLGALNRQAFTGPLAAVTGSSGKTSVKEMLAAIL-RAGLNGAVLATRGN 138

Query: 153 ISSFAQDNRLTTP------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +     +N L  P      +P + A  +      G  HV   A +  L + ++  I    
Sbjct: 139 L-----NNDLGAPLTLLELAPEHRAGVIEL----GANHVGEIAYTVSLTRPQVTII---- 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN G  H+      +    AK  + E  L ++  A++  DD       +RA  AG +
Sbjct: 186 ---TNAGNAHVGEFGGPEKIVQAKGEILEG-LAQDGVAVLNLDDKAFSTWQRRA--AGHQ 239

Query: 267 VLS 269
           VLS
Sbjct: 240 VLS 242


>gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 504

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 144/364 (39%), Gaps = 50/364 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I  G +FV + G + DGH FI  A   GA A           FS  +    P ++V
Sbjct: 80  DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVAT----------FSEKVVEGHPYILV 128

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++        A+    K   ++ AVTG++GK++    + Q+   + L+    G       
Sbjct: 129 EDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQG------- 181

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGIKLIAGSFTNL-G 213
              +N +  P  +           +G   + +E    H  D H L  +     +   L G
Sbjct: 182 -NYNNEIGLPYTVLHM-------PEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLIG 233

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRAHNAGCRVLSV 270
             H+++ + +      K+++ +  +P+    ++ AD   DAY  E           V+  
Sbjct: 234 EAHLEFFKDRSEIAKGKLQIADG-MPEGGLLVVPADPIVDAYLPE--------KQTVVRF 284

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G   + FI       I  K  +T      +     P+ G++   NA++AA + +  G+  
Sbjct: 285 GPDEEIFI----TELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVALQEGVSE 340

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS---GRII 385
           A + +  E L +   R E+    S G  I  D Y     ++ +IL+   TI +   GR +
Sbjct: 341 AAIRDSFETLQLTRNRTEWKKA-SNGADILSDVYNANPTAMRLILETFSTIPANPNGRKL 399

Query: 386 VVFG 389
            V  
Sbjct: 400 AVLA 403


>gi|238019066|ref|ZP_04599492.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
 gi|237864321|gb|EEP65611.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
          Length = 460

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 135/344 (39%), Gaps = 54/344 (15%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HP 114
           H+   +    G +A+V S+A         IR + P +V    +    L  S +       
Sbjct: 54  HIGHNKEYVNGVDAVVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            + +AV G  GK+S  S + QI     L      PT  I               YL K  
Sbjct: 105 TDGIAVAGAHGKTSTTSMIGQI-----LVEADADPTVIIGGEVD----------YL-KGS 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S L     + V  + S     + R   I +     TN+  DH+D+++T     NA    F
Sbjct: 149 SCLGKGHFSVVEADESDGSFLKLRPHTIVI-----TNIEDDHMDHYKTMDNLLNAFCE-F 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNK 288
            E LP+   AI+  D+   + +M R +      ++ G      Y  K IH      +++ 
Sbjct: 203 VETLPESGKAIVCGDNENIRYIMSRVNR---NFITYGLSDNNDYVAKNIHYVDSTLVYDV 259

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNAL----VAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               +++E         +PGE  V N+L    VA   C   G+++ ++ + L K      
Sbjct: 260 YHKGVNIE----RIRLRVPGEHNVLNSLAAFIVAHDCC---GVETRIITKGLGKFIGAKR 312

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           RFE  G +  G  +  DYAH    ++  LK  + +   R+I VF
Sbjct: 313 RFETKG-HVAGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVF 355


>gi|113866800|ref|YP_725289.1| cyanophycin synthetase [Ralstonia eutropha H16]
 gi|113525576|emb|CAJ91921.1| cyanophycin synthetase [Ralstonia eutropha H16]
          Length = 856

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 123/312 (39%), Gaps = 35/312 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++F+    G+ P  ++AV+GT+GK++    +  I   SGL   ++G T T   + Q  R+
Sbjct: 460 TMFSDGDDGRIP--VVAVSGTNGKTTTVRLITHIMATSGL---RMGMTGTDGVYIQGERI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219
            T        A + L    V     E +  GL +  L   +      TN+G  DH+   Y
Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSY 574

Query: 220 HQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271
             + +     K  + + + P          P ++   DA    V   AH+     ++   
Sbjct: 575 INSVEDLAVLKSVIVQNVAPHGMAVLNAADPMVVRMADACPGSVTFFAHDPNQPAMATHR 634

Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIA 324
            QGK   F+    + A     +V I+V         PL       FQV NA+ +     A
Sbjct: 635 AQGKRVVFVDGADIVASEGDTEVRIAVAE------VPLTRNGTIGFQVDNAMSSIAAAWA 688

Query: 325 IGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +GID   +   L          PGRF     + RG  +  DY H  +++  +   + TI 
Sbjct: 689 LGIDWPTIRRGLATFVNDAQTAPGRFNVF--DYRGATLIADYGHNPDAILALCNAVETIP 746

Query: 381 SGRIIVVFGCGG 392
           + R +VV    G
Sbjct: 747 AKRRMVVISGAG 758


>gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 528

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 31/241 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----------QDFSAT 85
           DSR + AG +F+A+ G + DGH +   AI QGA A++ +    +           D +A 
Sbjct: 58  DSRQVTAGGLFLALPGARVDGHEYATTAIGQGAVAVLAARPVDVPSIIVPPVTPTDSNAD 117

Query: 86  IRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           I ++ P      V++   K          G H   ++A+TG++GK+S   F+  +   +G
Sbjct: 118 IYAHDPEGHGAAVIEALSKLARHVVDLAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAG 177

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +    G  +            T    YL   ++ +S++G+ H++  A        R+  
Sbjct: 178 DTVAPPGSFNNEVGLPHTALRCTTHTRYL---VAEMSARGIGHIAHLA--------RITP 226

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMK 258
            ++  G+  N+G  H+    ++     AK  L E  LP  +    A++ ADD +   +  
Sbjct: 227 PRI--GAVLNVGSAHLGEFGSRANIAQAKGELVEA-LPAAADGGVAVLNADDPFVAAMAP 283

Query: 259 R 259
           R
Sbjct: 284 R 284


>gi|163814710|ref|ZP_02206099.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
 gi|158450345|gb|EDP27340.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
          Length = 460

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 125/325 (38%), Gaps = 62/325 (19%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQI 136
           ++F A +    P+L    TR       ++L G+  EN    +AV+GT GK++  S +  I
Sbjct: 84  EEFKAAVEKGIPML----TR-------AQLLGQIMENYKYSIAVSGTHGKTTTTSMLSYI 132

Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                L      PT ++         N     S  ++ +A  Y +S              
Sbjct: 133 -----LIDADTDPTISVGGILDSIGGNIRVGKSEYFVTEACEYTNS-------------- 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                    K       N+  DH+D+ +           +F    PKE   I+  D  Y 
Sbjct: 174 -----YHAFKPFISIILNVDADHLDFFKDIDE-IAESFHVFATKTPKEGLVIVNGDMEYY 227

Query: 254 KEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQ-------QVTISVEGKDF-DFL 303
             V++   +  CR+++ G   Q K+       + HN +         T+ V+GK+  D  
Sbjct: 228 DTVVR---DLECRIVTFGKGTQNKY-------SAHNIRFDDLGHPTYTLVVDGKEVTDIT 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  VYN+L A    + +GI   ++ + L +      RFE+ GT     R+  DYA
Sbjct: 278 LRVFGEHNVYNSLSAIAAALELGISIDVIKQGLSECVGAERRFEYKGTILDNVRVMDDYA 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388
           H    +   LK  +  +   +  VF
Sbjct: 338 HHPTEISATLKAAQNTSYNELWCVF 362


>gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thiomicrospira crunogena XCL-2]
 gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 474

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 10/108 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R +++G +++AI G   DGH FI +A+ QGA A+++S           + +  P 
Sbjct: 31  VSTDTRTLKSGALYIAIKGEHFDGHAFIGEAVRQGAVAVLISEP---------METVVPA 81

Query: 93  LVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQR 139
           ++VD+TR     FA+    +   + ++ VTG++GK++  + +  I  +
Sbjct: 82  VLVDDTRIAFGQFAAWHRQQMSLKGLVGVTGSNGKTTTKALLAHILSK 129


>gi|67459026|ref|YP_246650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           felis URRWXCal2]
 gi|75536538|sp|Q4ULT8|MURD_RICFE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|67004559|gb|AAY61485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia felis
           URRWXCal2]
          Length = 449

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 98/245 (40%), Gaps = 45/245 (18%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N +AVTGT+GKS+  + +  I   +GL     G                  P   AKA  
Sbjct: 105 NFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNIGV--------------PALQAKA-- 148

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S  G     +E SS  LD  +    K+      N+  DH+D HQ    Y  AK ++F+
Sbjct: 149 --SKDGYI---LELSSFQLDLVKTFTAKI--AVLLNITPDHLDRHQDMTGYIAAKSKIFD 201

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             + K+S A I  D+ Y +E+          +L    + K I       + N     ISV
Sbjct: 202 R-MDKDSYAAINIDNYYCREIF--------MLLQQEQRIKLIPFSVTKILKN----GISV 248

Query: 296 EG---KDFDFLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            G    D D  + LP      G     N   +  +   IG++S  +LE +     +P R 
Sbjct: 249 VGDKINDNDISYKLPFNKNLQGTHNCENIAASYAVAKIIGVESKKILESISSFQSLPHRM 308

Query: 347 EFVGT 351
           +++G+
Sbjct: 309 QYIGS 313


>gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 486

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           NQ+S    ++ +  +  +  DSR+I  G +F+ + G + DGH FI  A   GA A +   
Sbjct: 47  NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 98

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S       P L+V +  K   + A     K   +++AVTG++GK++    +  
Sbjct: 99  -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 151

Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           I   +       G  + +IG   T+    +D        I L     +L   G  HV  E
Sbjct: 152 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIVLEMGQDHL---GDIHVLSE 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +     + R+  + LI       G  H+++  +++     KM++ + +    S  I+ A
Sbjct: 204 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 248

Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                 D Y   ++  ++  H+   +V  +  +              K  +T      + 
Sbjct: 249 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 294

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  I  
Sbjct: 295 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 353

Query: 361 D-YAHTSNSLEMILKNIRTI 379
           D Y     ++ +IL+    I
Sbjct: 354 DVYNANPTAMRLILETFSAI 373


>gi|119870782|ref|YP_940734.1| Mur ligase middle domain-containing protein [Mycobacterium sp. KMS]
 gi|119696871|gb|ABL93944.1| Mur ligase, middle domain protein [Mycobacterium sp. KMS]
          Length = 1299

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 126/310 (40%), Gaps = 34/310 (10%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L V + R  L+  A      +P  I+AVTG++GK+S  + ++ + Q  G+      PT
Sbjct: 505 PRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGVPKR---PT 561

Query: 151 STISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              ++F   N     LT  +   +  A S+LS +G    +V              ++   
Sbjct: 562 KNFNTFDGVNGEVANLTNEAIAVIEVAASFLSQRGGPRPNV--------------LRPEV 607

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T++G  H++Y  + Q     K  +F +L+ + +  I    D Y   +++RA  AG  
Sbjct: 608 AMITSIGEAHLEYFGSPQGVAEVKSNVF-DLMSRGTAVIPRDADTYDY-MVQRARAAGAT 665

Query: 267 VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +S G +     HL    A      V   + G+   +     G     N++ A G+  A+
Sbjct: 666 TVSFGAHPSADAHLLSYSAADGV--VEAEIFGERITYELGALGRHFARNSVGALGVVAAL 723

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN------SLEMILKNIRT 378
           G+D       L     V GR       S  GR   +D A+ +N      ++EM+ +   T
Sbjct: 724 GLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERA-T 782

Query: 379 ITSGRIIVVF 388
              GR I V 
Sbjct: 783 PPRGRRIAVL 792


>gi|42524578|ref|NP_969958.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus
           HD100]
 gi|48428296|sp|P61676|MURC_BDEBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39576787|emb|CAE80951.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus
           HD100]
          Length = 453

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 151/371 (40%), Gaps = 58/371 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S    I   + LS     PT  I    +           L K+ + L
Sbjct: 108 IAVAGTHGKTTTTSMTSAIFLEANLS-----PTIVIGGRFE-----------LIKSTAML 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQT----QQAYFNAKMR 232
            S     +  EA       H+L   I +I    TN+  DH+++ +T    Q+++ +  ++
Sbjct: 152 GSG--EWLVAEADESDGSFHKLSPEIAII----TNIDSDHLEHFKTFENVQKSFHDFALK 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--------GKFIHLKKVCA 284
           +     P     I+  DD   +++ +   N   R+L  G+         G+  H     A
Sbjct: 206 V-----PFYGKVIVCGDDPLVRQIFE---NFPKRILFYGFDEKNDLVVTGEHGHY----A 253

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +H   ++ +  +    +F   +PG     NA+ A    +A GI  A   + L++   V  
Sbjct: 254 VHRNDRL-LGTKHLVGEFDLKVPGRHNALNAVAAICAGVAAGIPFATCAKGLQRYEGVDR 312

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG- 403
           RF F G   +G ++Y DY H    +  +L+  R     + +VVF       + +      
Sbjct: 313 RFHFKG-EKKGIKVYDDYGHHPTEVRAVLQAFREKYPKQRLVVFFQPHRYSRTQHCWHDF 371

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             A   AD  ++TD  P  E P      EK+ +E+ H    +  + ++  A +  + ML 
Sbjct: 372 TTAFMEADQVLLTDIYPAGEAPIPGVTSEKLASEMKHEHAQYFVRDDK--ATQKILGMLK 429

Query: 458 KQDVLVVAGKG 468
           + DV V  G G
Sbjct: 430 EGDVFVTLGAG 440


>gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
 gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
          Length = 455

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           NQ+S    ++ +  +  +  DSR+I  G +F+ + G + DGH FI  A   GA A +   
Sbjct: 16  NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 67

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S       P L+V +  K   + A     K   +++AVTG++GK++    +  
Sbjct: 68  -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 120

Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           I   +       G  + +IG   T+    +D        I L     +L   G  HV  E
Sbjct: 121 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIVLEMGQDHL---GDIHVLSE 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +     + R+  + LI       G  H+++  +++     KM++ + +    S  I+ A
Sbjct: 173 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 217

Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                 D Y   ++  ++  H+   +V  +  +              K  +T      + 
Sbjct: 218 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  I  
Sbjct: 264 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 322

Query: 361 D-YAHTSNSLEMILKNIRTI 379
           D Y     ++ +IL+    I
Sbjct: 323 DVYNANPTAMRLILETFSAI 342


>gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 456

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 166/417 (39%), Gaps = 54/417 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  +N++  DSR I  G +F+ + G + DGH FI  A  +GA A           FS
Sbjct: 20  EFDDVPLNQIEFDSRKIVKGDLFLPLKGER-DGHDFIELAFEKGAAAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P L+V++        A     K   +++AVTG++GK+S    ++ +       
Sbjct: 69  EHPIEGKPYLLVNDCLHAYQTLAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVL------ 122

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
                  +T  ++         + I L   + ++  +    V      H  D H L  I 
Sbjct: 123 ------ATTYKTYKTQGNYN--NEIGLPYTVLHMPDETEKVVLEMGQDHMGDIHLLSEIA 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      T +   H+++  +++     KM++ + +   +S  I+ A       ++     
Sbjct: 175 QPRIAVLTIVAEAHLEFFGSREKIAQGKMQIVDGM---DSHGILLAP---GDPIIDPYLP 228

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V+  G +G+ I +K +    +K  +T +    D     PL G++   NA++AA + 
Sbjct: 229 DNQMVIRFG-EGEEIFVKDIK--EDKNSLTFTTNVLDQAVTLPLSGKYNATNAMIAAYVG 285

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK---NIRT 378
             + +    ++E LE + +   R E+    + G  I  D Y     ++++IL+   NI  
Sbjct: 286 KLLAVSDEDIVEALESVQLTKNRTEWKKA-ANGADILSDVYNANPTAMQLILETFSNIPN 344

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
              G+ I V     +       +  K+ + L+              PEKI   I +G
Sbjct: 345 NPDGKKIAVLADMKELGPDSVSLHSKLIMSLS--------------PEKIDTLIFYG 387


>gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 457

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 144/336 (42%), Gaps = 53/336 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR +    +F+AI G   DGH F+P+ + +G +++V+            + SN P 
Sbjct: 31  ISIDSRTLLKNDLFIAIKGKNFDGHSFLPEVLNKGVKSVVIKKG-----MQRLLPSNFPY 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145
            VV++T +     A     K    I+A+TG+ GK++    +  +  + G      ++F  
Sbjct: 86  WVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNN 145

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   TI +   ++++              +  +G+  +        L ++    I +I
Sbjct: 146 EIGVGLTILATDIEDKVLVLE----------MGMRGLGQI------ENLSKYSEPDIAVI 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263
               TN+G  HI    +++   +AK  + + L P E   II A+D + ++ +K +     
Sbjct: 190 ----TNIGTAHIGLLGSKKNITHAKCEISKFLNP-EGVVIIPANDPFLEKTLKESWKGRV 244

Query: 264 -GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              ++L++  Q + F     +   +N  + TI +E   F+    L G     N L A  +
Sbjct: 245 IKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEENTFE--ISLEGFHNASNFLFAYAV 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +GID A              +F+FV   S GGR
Sbjct: 303 SKELGIDFASF-----------NKFDFV---SFGGR 324


>gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
 gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
          Length = 464

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 151/378 (39%), Gaps = 50/378 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +   S+D+R      +F A+ G   D H ++  A+AQG  A+VV     +       
Sbjct: 22  ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVERECEI------- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P LVV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+      +
Sbjct: 75  --DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTACEQE 132

Query: 147 IGPTSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIK 203
           +     + +F   +N L  P + + L +   Y   + G  H+   A +  + Q       
Sbjct: 133 V-----LYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPD----- 182

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRA 260
             A    N+   H++   +      AK  ++   L +   AI+   +    + KE+  R 
Sbjct: 183 --ACLVNNVAAAHLEGFGSLAGVAQAKGEIYRG-LKENGKAIVNLAFYYPQWQKEIGSR- 238

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQ 311
                 + S  Y G         A +  + V + + G  F    P       LP  G+  
Sbjct: 239 -----EMQSFSYIGSD---SDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHN 290

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SL 369
           V NAL A  L +++G     V   LE+  +V GR   V  N     +++D  + +N  S+
Sbjct: 291 VSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC--LFIDDTYNANVDSM 348

Query: 370 EMILKNIRTITSGRIIVV 387
           +  +  +    + RI  V
Sbjct: 349 KSAISVLENYPAYRIFAV 366


>gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
 gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
          Length = 457

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 149/357 (41%), Gaps = 36/357 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  IN++  DSR I AG +F+ + G + DGH FI  A   GA A      ++ ++  A
Sbjct: 21  YEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGALA-----TFTEKELPA 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ILV D    F  L A  L  K   +++AVTG++GK++    +  I   +  + 
Sbjct: 75  ---DQVHILVDDALEAFQKLAAYYLE-KTEVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G          +N +  P   Y A  +   + + V  +      H  D H L  + K
Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSTLAK 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+++  ++      KM++ ++ +P  S  ++ +D      ++     +
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPSD-----PIVNPFLPS 230

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+  G  G  + +  +     K  +T S    D     P+ G++   NA+VAA +  
Sbjct: 231 NLEVVRFG-DGAELTVSDLTEF--KDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAYVAK 287

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
            +G+    +L  L  L +   R E+    + G  I  D Y     ++++IL+    I
Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLILETFSAI 343


>gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 482

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 44/382 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER I+  S D+R +Q G +F AI G+  DGH F+P A+ +        +A      +  +
Sbjct: 22  ERAISGASIDTRTLQPGDLFFAIRGDARDGHDFVPDALGR-----GAGAAVVSAARAEAL 76

Query: 87  RSNTPILVV-----DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            ++ P+L V     D     +    +    +    ++AVTG+ GK+     ++ +    G
Sbjct: 77  AAHGPVLAVPEGGADPVLTAMVRLGAAARARTSAQVVAVTGSVGKTGTKEALRHVLSEQG 136

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD------ 195
                    +  S+ + +N      P+ L + +   +  GV  + +   +HG +      
Sbjct: 137 --------ETHASAASYNNHWGV--PLTLTR-MPRSARYGVFEIGM---NHGAEIVPLTA 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R D I LI    T +   HI++  +  A  +AK  +F  L P    AI+  D  +   
Sbjct: 183 QVRPD-IALI----TTIAPAHIEHFASLAAIADAKGEIFSGLRPG-GVAILNRDAPHFDR 236

Query: 256 VMKRAHNA-GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +   A  +   RV++ G +    +   K+    +   +  +V G+   +     G     
Sbjct: 237 LAAHAQASRAGRVVTFGEHPDADVRALKIVLRPDLSVIDAAVMGQPVTYKLGTAGRHAAL 296

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEM- 371
           N+L    +  ++G D A     L  L    GR E       GG  Y VD ++ +N + + 
Sbjct: 297 NSLGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGTAYLVDESYNANPVAVR 356

Query: 372 ----ILKNIRTITSGRIIVVFG 389
                L  I T   GR I V G
Sbjct: 357 AALATLAGIETGPRGRRIAVLG 378


>gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae T3T1]
          Length = 456

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++D+R   +  +F A+ G   D H ++ +A+ QGA A+VV  A +           
Sbjct: 25  VENINTDTRRSVSNSLFFALKGEHFDAHQYLDKAVEQGAAALVVQQANT--------EIA 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           TP LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q++ 
Sbjct: 77  TPQLVVADTRLALGQLAKWLREKINPRTVAMTGSSGKTTVKEMTASILQQTA 128


>gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 455

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 8/115 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + + + VS DSR IQAG +F+A+ G + DGH ++ +  A+GA A +V             
Sbjct: 22  DARYSGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVP-------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            S  P L+V +TR  L    +         + AVTG+SGK++V   +  I +  G
Sbjct: 74  DSTLPQLLVKDTRLALGQLGALNRAAFSRPVAAVTGSSGKTTVKEMLASILRTRG 128


>gi|225023739|ref|ZP_03712931.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
 gi|224943621|gb|EEG24830.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
          Length = 451

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 153/364 (42%), Gaps = 42/364 (11%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + + A  L GK    I+A+TG++GK++V S V  +C+  GL +   G   T    A ++R
Sbjct: 104 VEILAHELSGKR-NKIIAITGSNGKTTVTSLVGHLCRECGLDTVVAGNIGTPVLEAYEDR 162

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
               + +++                +E SS  L+    D +   A +  N+  DH++ + 
Sbjct: 163 QEQSADVWV----------------LELSSFQLEN--TDHLNAAAAAVLNISEDHLNRYD 204

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
               Y +AK ++F          +I ADDA  +  MKR   +G  V     Q +  +   
Sbjct: 205 DLLDYAHAKDKIFR----GSGVQVINADDALCR-AMKR---SGREVRRFSLQQETDYWFD 256

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             + + K      +   D     PL G     N L A  LC AIG+    +L H+     
Sbjct: 257 AASGYLKHGAETLIAAAD----IPLQGLHNAANVLAALALCEAIGLPREQLLRHVRTFKG 312

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +P R E +G   + G +++D +  +N +      I  + S   ++  G G  + Q   P+
Sbjct: 313 LPHRVEKIG--EKNGVVFIDDSKGTN-VGATEAAIAGLQSPLFLIAGGQG--KGQDFTPL 367

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +      + ++ +D P      +IR ++       ++  +  EA++TA  +    D+
Sbjct: 368 KNVLPGKARAVLLIGEDAP------QIRRDLAGCGVEMMDCASLQEAVQTAYRLAEPGDI 421

Query: 462 LVVA 465
           ++++
Sbjct: 422 VLLS 425


>gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 453

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 139/344 (40%), Gaps = 25/344 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ V +DSR  Q G +FVA+ G + D H F+ + +A+GA A+ V   + L   S     
Sbjct: 21  EVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVARGAAAL-VRDGFELAGASL---- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              I   D+TR  L   A+      P   + VTG++GK++V   +  I +    +   + 
Sbjct: 76  ---IQAGDDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTVKEMLAAILRAHAGADAVL- 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
             +T  +F  D        I L   L  L  Q    V     +H  +   L G+ +    
Sbjct: 132 --ATAGNFNND--------IGLPLTLLQLKPQHRYAVIEMGMNHHGELSYLTGLTRPQVA 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R H  +  + +    AK  +FE L+     A++ ADDA     + RA     R 
Sbjct: 182 LVNNAMRAHFGHFGSTEDVARAKAEIFEGLI-DAGVAVVNADDANLP--LFRAAAGSHRQ 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G     +  + +       + T+           P PGE  V NAL AA   +A+ +
Sbjct: 239 LSFGLGLADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAAAAAALALEV 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             A + E L       GR +     S  G   +D ++ +N   M
Sbjct: 299 PLAAIAEGLSAFAGAKGRLQI--KQSPRGLTVIDDSYNANPDSM 340


>gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 436

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 98/474 (20%), Positives = 192/474 (40%), Gaps = 84/474 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +FVA+ G + DGH F  +A ++GA   +V            +      ++V
Sbjct: 30  DSREVKEGNVFVALRGGRHDGHDFAQEAFSRGAVGAIVQRGIK-------VPKGKFYVLV 82

Query: 96  DNTRKFL---SLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGLSSF 145
           D+T + L   +L+  RL+      ++ V G++GK++       + S + ++C+     + 
Sbjct: 83  DDTLEALRRIALYRRRLF---TGRVIGVAGSAGKTTTKEMIAFLLSKIGKVCKTPKNYNS 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           QIG   +I++F +D +                       V + AS  G  ++ +   K  
Sbjct: 140 QIGLPFSIANFEEDCQFWV--------------------VEMGASQKGDVKNLVKLAKPH 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAG 264
               T +G +H++              +FE++  ++   +  Y    Y  +         
Sbjct: 180 VRVITAIGEEHLETFGCLDDVIVGNGEIFEDMQERDVAVLPKYVSHCYELK--------- 230

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V++ G  G    L+      +K+ +T  VE  D      +P    + NAL + G+  A
Sbjct: 231 -NVITFGEGGD---LQATNIKLSKEGITFQVE--DVSLSLRVPSLAVLENALCSLGVLKA 284

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
           +G +   +  HL      P RF  +    +G  + +D  + +N  S+   L ++      
Sbjct: 285 LGYNWKELSHHLANFSPAPQRFHLI---RKGSFLIIDDTYNANPPSVRKALLSLSLFDGY 341

Query: 383 RIIVV---FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           RI ++      G   +   R + GK+  +L  D  I    + R    E +R    HG+  
Sbjct: 342 RIALLGDMLELGPMSEAYHREV-GKLCAELGIDACIFYGTHMRFAYEECLR----HGVLC 396

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    ++ EA+R    ++ +  V++V             G + M ++ D++REI
Sbjct: 397 Y-HSSSKEEALRYLSSLIREGSVILV------------KGSRGMKME-DLVREI 436


>gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
 gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
          Length = 430

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           NQ+S    ++ +  +  +  DSR+I  G +F+ + G + DGH FI  A   GA A +   
Sbjct: 16  NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 67

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S       P L+V +  K   + A     K   +++AVTG++GK++    +  
Sbjct: 68  -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 120

Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           I   +       G  + +IG   T+    +D        I L     +L   G  HV  E
Sbjct: 121 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIILEMGQDHL---GDIHVLSE 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +     + R+  + LI       G  H+++  +++     KM++ + +    S  I+ A
Sbjct: 173 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 217

Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                 D Y   ++  ++  H+   +V  +  +              K  +T      + 
Sbjct: 218 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  I  
Sbjct: 264 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 322

Query: 361 D-YAHTSNSLEMILKNIRTI 379
           D Y     ++ +IL+    I
Sbjct: 323 DVYNANPTAMRLILETFSAI 342


>gi|313886033|ref|ZP_07819771.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924563|gb|EFR35334.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 461

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 148/366 (40%), Gaps = 43/366 (11%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA R  G     ++A+TG++GK++  +++      +GL     G   T  S A+   L  
Sbjct: 97  FAYRYAGD--SVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGT--SLARQVALA- 151

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQ 223
           P   Y+                +E SS  LD   +   +       N+  DH+D Y    
Sbjct: 152 PHAYYV----------------IELSSFQLDH--MYQFRAHIAILLNITPDHLDRYDHQM 193

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKV 282
           + Y  AKMR+ +   P +   I + +D +++ ++K     AG R+    +  K      V
Sbjct: 194 ELYARAKMRITQNQEPTDY-FISWIEDDWTQRLLKEPGMGAGRRIF---FSTKASSDDAV 249

Query: 283 CAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A  +  Q+  +++   F+ L     L G+  V NAL       A+G+   ++   LE  
Sbjct: 250 VASSHNGQLCFALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETF 309

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VP R E++ +      I    A   NS    L+++R  T    I++ G G D+     
Sbjct: 310 TNVPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPT----ILILG-GTDKGNDYN 364

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +M  +   +  +  +T D+       K+       IP   E  +  +AI  A +M    
Sbjct: 365 DLMDLVKEKVVGLIYLTTDSA------KLHRSFDSVIPRHEEVTSMRDAIAAARQMATAG 418

Query: 460 DVLVVA 465
           D ++++
Sbjct: 419 DTVLLS 424


>gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
 gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
          Length = 476

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 121/314 (38%), Gaps = 22/314 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R ++AG +FVA+   + DGH F+ QA+ +GA A +VS           + ++ P+
Sbjct: 26  VSIDTRTLRAGDLFVALSAAR-DGHEFVAQALEKGAAAALVSR------VPENVPADAPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +  + L         +    I+AVTG+ GK+S    ++ +          IG    
Sbjct: 79  LVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKTSTKEMLRTV----------IGGQRR 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + +           P+ LA+ +   +  G+  + +          RL   +      T +
Sbjct: 129 VHAAEASYNNHWGVPLTLAR-MPRDTEVGIIEIGMNHPGEIAPLARL--ARPHVAMITTV 185

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++           K  +F  L+P    A+I  D   +  +   A   G  +L+ G 
Sbjct: 186 GTAHLEAFDNIDGIAREKASIFNGLMPG-GWAVINGDLDTTPILRAAAEATGAHILTFGE 244

Query: 273 QGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                H L KV  I         +      F     G     NAL    +  A+G+D AL
Sbjct: 245 APANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVLAVVRALGLDRAL 304

Query: 332 VLEHLEKLHVVPGR 345
               L +     GR
Sbjct: 305 ACSDLSQWTPPAGR 318


>gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 465

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 164/406 (40%), Gaps = 53/406 (13%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+ +KD  +L   L        +  I  +S+DSR I+ G  FV +VGNK D H ++  A 
Sbjct: 2   DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAF 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPEN----ILA 119
             G +A VVS  Y     +  +    P  VV +T     L+A  ++   H  N    ++A
Sbjct: 62  DLGIQAAVVSEKY-----NGLVPIGLPHWVVPDT-----LYAYQQIALLHRRNLNLPVVA 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+ GK++    ++ I    G           +SS   +N     + I + K L   S 
Sbjct: 112 VTGSVGKTTTRELIRAILSPLG---------EIVSSRGNEN-----NDIGVPKTLLSGSE 157

Query: 180 QGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                V +E    G  Q  RL  + +      TN+G+ HI    +++    AK  +   L
Sbjct: 158 TDAAFV-LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYL 216

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-----------VCAIH 286
            P     I + D    K ++++      RV   G+   ++                 +  
Sbjct: 217 SPDGVVIIPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFAFQDIEPDYISQI 276

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           + Q   I  EG+ F    PL G     N L+A  +   +G+ S   L+ L K+++  GR 
Sbjct: 277 DMQNNFILFEGRKFK--LPLEGRHNAMNFLLALTVATELGL-SIKKLDQL-KINMPIGRN 332

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGC 390
             V     G  + +D  + + S E ++ ++  + S  GR   V G 
Sbjct: 333 RLVDC---GQYLVLDETYNA-SPESVIASLELLVSKPGRHFAVLGT 374


>gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum MopnTet14]
          Length = 450

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 135/330 (40%), Gaps = 45/330 (13%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-----SAYSLQDF 82
           +K+  V+ DSR +  G IF A+ GN+  GHLF+ QA   GA A VV+      +Y LQ F
Sbjct: 23  KKVTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRGPSYGLQLF 82

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141
                       V + R+ L   A R  G   +  ++ +TG+ GK++  SF QQ+     
Sbjct: 83  H-----------VADPRESLRE-AGRTQGALFQGEVIGITGSVGKTTTKSFTQQL----- 125

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           LSSF        S  + +++LT P  I +A        +    + +  S  G  ++ L+ 
Sbjct: 126 LSSFY---KVFASPKSYNSQLTLPLSILMADG-----DEDFLLLEMGVSEPGNMKNLLEV 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---LLPKESPAIIYADDAYSKEVMK 258
           I+   G  T     HID              + EE   LL +    ++  D ++    MK
Sbjct: 178 IEPTIGVIT-----HIDVQHAMNFLDKGAKGIVEEKSLLLERCGLQLLPKDSSWFPFFMK 232

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +   A     S+  +    + +   AIH+   V IS    D +     P      N LVA
Sbjct: 233 KNSTAEQFSFSMNNETSDFYYR---AIHS-DGVLISAPDGDIELPVVFPYSPAYMNFLVA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPG-RFE 347
             L     +     LE +    ++P  RFE
Sbjct: 289 VALAWLTNVPMDR-LEQVSPSLILPSMRFE 317


>gi|195953887|ref|YP_002122177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
           sp. Y04AAS1]
 gi|254766052|sp|B4U609|MURD_HYDS0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195933499|gb|ACG58199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 411

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 124/298 (41%), Gaps = 63/298 (21%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A R Y    +NI+AVTGT GKS+    +                    +SF +     TP
Sbjct: 78  AYRFY--KGKNIIAVTGTDGKSTTVHLIHHF-----------------TSFKEGGNFGTP 118

Query: 166 -SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            S I L             +V++EASS       LD  +   G F N  +DH+D+H + +
Sbjct: 119 FSEIVL--------DNDKENVALEASS--FQGKTLDTFRPNVGVFLNFSKDHLDWHPSLE 168

Query: 225 AYFNAKMRLF-----EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            Y  +K ++F     E++L   +   +    + +K++     N   +V+     G  ++ 
Sbjct: 169 DYLLSKQKIFKNQTQEDILILNAQKPVCDTPSLAKKIF-FGENGDLKVV-----GSDVYY 222

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K    I N    +             L G   +YN  VA+ +  ++GI    + ++LE  
Sbjct: 223 KDELLIENISHPS-------------LKGLHNLYNIAVASFVAFSMGISLEEIKKNLETF 269

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGC---GGD 393
             +P R++++G N  G  I  D   T+ N+L   L++    T   I+++ G    GGD
Sbjct: 270 EALPFRYQYLG-NFEGIDICNDSKSTTVNALMSALES----TKAPILLIAGGIDKGGD 322


>gi|303230738|ref|ZP_07317485.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514498|gb|EFL56493.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 460

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 171/428 (39%), Gaps = 73/428 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           QG +A+V S+A         IR + P +V    +    L  S +        N +AV G 
Sbjct: 63  QGVDAVVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTNGIAVAGA 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S  S + QI     L   Q+ PT  I               YL K  S L     +
Sbjct: 114 HGKTSTTSMIGQI-----LVEGQMEPTVIIGGEVD----------YL-KGSSCLGKGEYS 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V  + S     + R    K+I    TN+  DH+D+++T +   NA  + F E LP +  
Sbjct: 158 VVEADESDGSFLKLRP---KMIV--ITNIEDDHMDHYKTMENLLNAFCQ-FVETLPVDGK 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEG 297
           A++  D+   + VM +      + ++ G      Y  K IH +    +++     +  +G
Sbjct: 212 AVVCGDNDNIRYVMSKVER---QFITYGLEDSNDYVAKNIHYEDSSLVYD-----VVHKG 263

Query: 298 KDFDFL-FPLPGEFQVYNAL---VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +   +PG   V N+L   + A  C  + + S  +++ L K      RFE  G + 
Sbjct: 264 ETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPS--IVKALGKFIGAKRRFETKG-HV 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK----IALDL 409
            G  +  DYAH    ++  LK  + +   R+I VF       +  R  + K     A   
Sbjct: 321 AGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVF----QPHRYSRTSLLKDEFATAFTS 376

Query: 410 ADIAIVTDDNPRSEDP---------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           AD   +TD     EDP           I +E+ H    ++E  N + A+   +  +   D
Sbjct: 377 ADEIYMTDIYSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLAKV--VRPND 434

Query: 461 VLVVAGKG 468
           +++  G G
Sbjct: 435 LVITMGAG 442


>gi|297571254|ref|YP_003697028.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931601|gb|ADH92409.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 450

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 5/182 (2%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ + +A+  A +    +++P     +   DD  +  + + A   G R+ +
Sbjct: 174 TNVEPDHLDHYGSAEAFDQAFVDFAGKIVPG-GLLVCCTDDPGAARLAEAAQVHGVRIAT 232

Query: 270 VGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G +   G    +  V +  N  +  +    ++      + G   + NA+ A  +C  +G
Sbjct: 233 YGMKPMPGDHTMISGVVSGANGVEAHVRRGDQEAHIRLSVHGTHMLMNAVGAWIVCCDLG 292

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D+A     L        RFE  G    G R+  DYAH    +E  L+  R++T+GR+ V
Sbjct: 293 FDAAESASALASFTGTGRRFELRG-EVNGVRVIDDYAHHPTEVEATLRTARSVTTGRVKV 351

Query: 387 VF 388
           VF
Sbjct: 352 VF 353


>gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
 gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
          Length = 896

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 153/367 (41%), Gaps = 33/367 (8%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           R+  I  + +DSR +      +F A+  ++ DG  FI     +G    VV     L D  
Sbjct: 92  RDANIGFLLTDSRSLCFAEETLFFALKTDRNDGQHFIGDLYRRGVFNFVVEH---LPDNY 148

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            T+  +   L V N    L   A R   +    ++ +TG++GK+ V  ++ Q      L 
Sbjct: 149 DTLYPDVNFLKVVNPLGALQRLAERHRDEFDIPVVGITGSNGKTMVKEWLYQ------LL 202

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDG 201
           S Q+  T +  S+  ++++  P  ++L   L+ +     G++     AS   +       
Sbjct: 203 SPQMVVTRSPRSY--NSQIGVPLSVWLMNELTQIGVFEAGISMPGEMASLRSI------- 253

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260
           I+   G  T +G  H +   + +   + K++LF      +S A+IY ADD      M+++
Sbjct: 254 IQPTIGVLTGIGTAHQENFASMEEKCSEKLKLFH-----DSEAVIYNADDDLIARCMEQS 308

Query: 261 HNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              G R+  S   +   + +K +    N   VT    GK+  +  P      V N++   
Sbjct: 309 GYKGRRMGWSQKDRNAPLFVKTIEKKENTTTVTYVYNGKEGQYSIPFIDSASVVNSITCM 368

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NI 376
            + + +G+ +  +   +++L  V  R E V T   G  +  D Y     SL++ L   N 
Sbjct: 369 AVSLYLGLSADDLDRRMQRLEPVAMRLE-VKTGQHGCTLINDSYNSDVKSLDIALDFMNR 427

Query: 377 RTITSGR 383
           R    GR
Sbjct: 428 RPDHKGR 434


>gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102]
 gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal:
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 8102]
          Length = 449

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 132/320 (41%), Gaps = 57/320 (17%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ +  + +DSR ++AG  FV +VG + DGH F+ Q  A G +  VVS      D++A +
Sbjct: 23  DQPVGTICTDSRQLKAGNFFVPLVGERFDGHRFLEQLPALGGQGAVVS-----LDWTAPL 77

Query: 87  RSNTPILVVDNT---RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            S      VD+T    + L+L   R  G     ++AVTG++GK++    ++ +       
Sbjct: 78  PSGLLHWRVDDTLAAYQQLALLHRRQLGLP---LVAVTGSAGKTTTRELIRAV------- 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS--VEASSHGLDQ-HRLD 200
              + P   I +   +N      P+ +  A       G  H +  +E    G  +  RL 
Sbjct: 128 ---LAPLGAIQASDGNNNNDIGVPLTVLGA-------GSDHAALVIEMGMRGPGEIARLS 177

Query: 201 -GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              +      TN+G  HI    +++A   AK  +   L P +   +I A D   ++    
Sbjct: 178 RCTEPDVAVITNIGTAHIGRLGSREAIATAKCEITAALHP-QGVVVIPAGDPLLEQ---- 232

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---------DFDFLFPLPGEF 310
                   L+  +QG+ + ++    + +   +T  + G          +     PL G  
Sbjct: 233 -------ALAAVWQGRVLRVR----LEDDPDITADLIGAARNDRLLLDEASIPLPLDGRH 281

Query: 311 QVYNALVAAGLCIAIGIDSA 330
              N L+A  +   +G+D A
Sbjct: 282 NARNLLLALAVGSHLGVDPA 301


>gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
 gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
          Length = 449

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 71/384 (18%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q         G  
Sbjct: 75  KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + ++G    ++S A D    T   I+           G+ H        G  +  +  +K
Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258
                 TN+   H+++  + +    AK  +F     K   A+I AD + Y+K   ++K  
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKKL 233

Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308
                    R+      ++     G+ ++LK              +  K  D + P +P 
Sbjct: 234 SITDIHSFGRSAKTSAELILYENLGEQVYLK------------YKINKKVLDVMIPFIPR 281

Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            F + Y  ++   L I I G D  +   HL  +    GR E +  N +  R+  DY + S
Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336

Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389
             S++  L+ ++ + +     + G
Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360


>gi|25008803|sp|Q8XHJ0|MURC_CLOPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 457

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 54  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +   + K   T 
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYKG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   RI+ VF
Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVF 360


>gi|161485639|ref|NP_563409.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           str. 13]
          Length = 466

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 63  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 122

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 123 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 177 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +   + K   T 
Sbjct: 217 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 272

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 273 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYKG 332

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   RI+ VF
Sbjct: 333 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVF 369


>gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
          Length = 465

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 43/372 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   VS D+R IQ G +FVA+ G + DGH F+ QA  +GA  ++ S     Q F      
Sbjct: 25  RAGGVSIDTRTIQPGDLFVALAGVR-DGHEFVEQAFEKGAAGVIASR----QVFG----- 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             P ++V +T   L    +    + P+    AVTG+ GK+SV   +      +GL+    
Sbjct: 75  --PAVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGKTSVTQAIM-----AGLT--LA 125

Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           GP  S++ S+  +N +    P+ LA+ +   +++ V  + +  +       R+  ++  A
Sbjct: 126 GPAHSSVKSY--NNHIGV--PLTLAR-MPRGTARAVFEIGMNHADEIRPLSRM--VRPHA 178

Query: 207 GSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T +G  H + +   +     AK  +FE L P    A++ AD+ +   +   A  AG 
Sbjct: 179 VVITTVGPVHTENFPDGEAGVARAKAEIFEGLEPG-GVAVLNADNRWFDLLKGEAERAGA 237

Query: 266 RVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            V + G       + I   +V A H   Q  +   GK  DF     G     N++    +
Sbjct: 238 TVRTFGTGEACDARLIDF-QVPAGHAVVQARL--HGKALDFPILQTGLHWGLNSMAVLLM 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
             A+G+D    L  L     + GR  E       G    +D ++ +N + M    I T+ 
Sbjct: 295 LEALGVDLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMA-SAIATLG 353

Query: 380 ---TSGRIIVVF 388
              T+GR IV  
Sbjct: 354 ARETAGRRIVAL 365


>gi|94498831|ref|ZP_01305375.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
 gi|94421719|gb|EAT06776.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
          Length = 475

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 114/286 (39%), Gaps = 40/286 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AV GT GK++  S +  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KSTVAVAGTHGKTTTTSMIAALLDAGGVDPTVIN-GGIINSYGSNARLGNSDWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   +    TN+  +H+D++ +    F+     F
Sbjct: 162 ------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHYGS----FDRVKDAF 202

Query: 235 EELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQ 290
            E +   P    A++  D    + ++ R  +   R+++ G+  +  I  + V  +     
Sbjct: 203 VEFVGNVPFYGAALLCLDHPEVQAILPRVQDR--RIVTYGFSAQADIRGENVRPVPGGNL 260

Query: 291 VTISVEGKD------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             + +  +D       D L P+PG   V N+L A G+ + +GI   ++    EK   V  
Sbjct: 261 FDVLIRDRDGHVEKISDILLPMPGRHNVSNSLAAIGVALQLGITHDVICTGFEKFGGVKR 320

Query: 345 RFEFVG-TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
           RF  VG     GG   V  DY H    +  +L   R    GR++ +
Sbjct: 321 RFTKVGEVQLEGGVATVIDDYGHHPVEIRAVLAAAREGALGRVVAI 366


>gi|15789660|ref|NP_279484.1| hypothetical protein VNG0412G [Halobacterium sp. NRC-1]
 gi|169235374|ref|YP_001688574.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Halobacterium salinarum R1]
 gi|10580024|gb|AAG18964.1| dihydropteroate synthase [Halobacterium sp. NRC-1]
 gi|167726440|emb|CAP13225.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Halobacterium salinarum R1]
          Length = 815

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 144/393 (36%), Gaps = 63/393 (16%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGP------------------------T 150
           + + + G++GK S A F + I + +GL       P                         
Sbjct: 41  DYVQIAGSNGKGSTARFTESILRAAGLDVGLYTSPHFDDVRERVTVNGRRMSKAALTTFI 100

Query: 151 STISSFAQDNRLTTPSPIYL----AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            TI+ +  +      +P Y     A AL   S   V    +E    G    RLD   ++ 
Sbjct: 101 ETITPYVTERAADGAAPTYFEVVTAMALWQFSRADVDVAVLEVGIGG----RLDATSVVD 156

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA--DDAYSK-----EVMKR 259
            S + +    +++            R    + P     ++ A  DDA +        ++ 
Sbjct: 157 PSASAVTSVTLEHTDVLGETIPEIARDKAHVAPAGDTPLVTATTDDALAAVRDHAGAVRT 216

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALV 317
             +   R ++  Y+G+           N  +  +S+ G D+      PL G+ Q  NA V
Sbjct: 217 VGDTAGRDVTATYEGRT----------NHTEAAVSITGDDWSVATEIPLLGDHQAENAGV 266

Query: 318 AAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           AA L     G+D   +   L   H  PGRFE +G +     + +D AH   +   + + +
Sbjct: 267 AAALARQTAGVDDDAIARGLRSAH-WPGRFEVMGADP---VVVLDGAHNPGACGAVAETV 322

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435
                 R++ VFG   D+D G        AL   D     +  P R+ED + + A     
Sbjct: 323 AEFDYDRLLTVFGAMHDKDHGAM----AAALPTPDHVWACEPVPDRAEDADVLAAVFEDA 378

Query: 436 IPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAGK 467
             G +     +E A+  AI      D+++VAG 
Sbjct: 379 GAGTVSVTRAVESAVADAIAEATADDLVLVAGS 411


>gi|15827435|ref|NP_301698.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae TN]
 gi|221229912|ref|YP_002503328.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae
           Br4923]
 gi|13431702|sp|P57994|MURC_MYCLE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766014|sp|B8ZQQ1|MURC_MYCLB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13092985|emb|CAC31296.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae]
 gi|219933019|emb|CAR71010.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae Br4923]
          Length = 495

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 24/199 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPK---ESPAIIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D++ +  AY    +R+F+  + +       ++  DD  +  + +R    G R
Sbjct: 189 TNIDSDHLDFYGSVDAY----IRVFDSFVERFALGGALVVCNDDPGAAALARRTAELGIR 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFL--FPLPGEFQVYNALVAA 319
           VL  G   +         +  +QQ T     I + G+    +   P+PG     NAL A 
Sbjct: 245 VLRYGSDDRIGETLAARLLSWEQQGTGAVAHIQLAGQPNSRVMRLPVPGRHMALNALGAL 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------RIYVDYAHTSNSLEMIL 373
              I IG  +  VL+ L     V  RFE VGT+  G       R++ DYAH    +   L
Sbjct: 305 LAAIEIGASTDEVLDGLAGFRGVRRRFELVGTSGVGQASNSLVRVFDDYAHHPTEISATL 364

Query: 374 KNIRTIT----SGRIIVVF 388
              R +      GR IVVF
Sbjct: 365 AAFRIMLEQSGGGRCIVVF 383


>gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 492

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 147/368 (39%), Gaps = 79/368 (21%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+++ V+ DSR     ++FV I G + DGH FIPQ + QG  A+   S + L D      
Sbjct: 26  REVSGVAIDSRKAGKDFLFVPIKGARVDGHSFIPQVMEQG--ALCTLSEHPLSD------ 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRS 140
            ++P ++V +  + L   A          ++ ++G+ GK+S    +AS ++Q   + + +
Sbjct: 78  -SSPYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTSTKEMIASILEQKYSVLKTA 136

Query: 141 G---------LSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           G         L+ FQI            IS F + NRL   +       +  L++ G  H
Sbjct: 137 GNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKIAQ----PDICVLTNIGQCH 192

Query: 185 VSVEASSHGLDQ-------HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
           +       G+ +       HR  G  +I     N   D +    T  A   +K     + 
Sbjct: 193 LENLGDRDGVRKAKTEMFAHRRSGASII----LNGDDDKLSEIATVHAASFSKQDGTTVV 248

Query: 233 LFEELLPKESPAIIYADDAYSKEVM---KRAHNA--GCRVLSVGYQGKFIHLKKVCAIHN 287
            + +    E+ A    D +     +   K  HNA     + S+G +G        C IH 
Sbjct: 249 PYSDSTHDETSAASAVDKSGDTTPIFFGKDPHNAFYADEIQSLGLKG------TSCKIHT 302

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH----LEKLHVVP 343
                      DF  +  +PG   VYNAL      IA+GI+  L L+     +E L  V 
Sbjct: 303 P--------AGDFTVIISIPGAHMVYNALAG----IAVGIELGLTLDEIKTGIEALQPVA 350

Query: 344 GRFEFVGT 351
           GR   + T
Sbjct: 351 GRNHMIET 358


>gi|315924910|ref|ZP_07921127.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621809|gb|EFV01773.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 480

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 23/193 (11%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+  DH+DY +            F  +LP +   I Y D   S +V+    +  C+
Sbjct: 186 GVITNIEEDHLDYFKGGLKQIKHSFHDFGSILPPDGLMIAYGD---SDDVLDVVSDLACQ 242

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----------DFLFPLPGEFQVYNA 315
           V++ G   K   + +         +T + EG  F            F   +PG+  V NA
Sbjct: 243 VITYGLSDKNEWVAR--------NITYNDEGNPFFDAYHNGTLYGRFALRIPGQHNVLNA 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           +        + I    V E L+       RFEF G    G  +Y DYAH    L++++  
Sbjct: 295 MACIACADYLNIQKETVEEALDHFGGAKRRFEFRGAVG-GINVYEDYAHHPTELKVVIDA 353

Query: 376 IRTITSGRIIVVF 388
                  ++ VV+
Sbjct: 354 CLNHAHNKLWVVY 366


>gi|254372062|ref|ZP_04987555.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151569793|gb|EDN35447.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3549]
          Length = 451

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 145/368 (39%), Gaps = 44/368 (11%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA+TGT GK++ +S +  + CQ    SSF +G    +  +A  N                
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGG---VVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L+   +I    TN+  DH+    T    +   +  F +
Sbjct: 147 IQVNGTDKLVIEADESDASFLFLNPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            + KES   IY   DD   ++++ + + +   V S G+     + +     I       I
Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      
Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            G ++ V  DY H    +   +  +R    + +II VF     R    R ++     AL 
Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378

Query: 409 LADIAIVTDDNPRSEDPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD  I+    P     E+I       +I+ G+ G++       AI    ++ N+  V++
Sbjct: 379 LADQLILL---PTYSAGEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVIL 435

Query: 464 VAGKGHET 471
           + G G  T
Sbjct: 436 IQGAGDVT 443


>gi|33519617|ref|NP_878449.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
 gi|44888181|sp|Q7VQI7|MURC_BLOFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33517280|emb|CAD83664.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
          Length = 480

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 134/341 (39%), Gaps = 52/341 (15%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I Q    +V+SSA  + +          I V+    K LS      YG      +A+ GT
Sbjct: 76  INQEINIVVISSAIDINNPEVQQAKRLKIPVIHRV-KILSELMRYKYG------IAIAGT 128

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  I   +GL                        P ++   +  + SQGV+
Sbjct: 129 HGKTTTVSMLTNIYVEAGLD-----------------------PTFVNGGI--IRSQGVS 163

Query: 184 HV-----SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                     A S   D+  L    ++A   TN+  DH++ +     Y       F + L
Sbjct: 164 ARLGYGNDFIAESDESDKSFLRLCPVVA-VITNIDTDHMNTYHQNFEYLQEVFIKFLDKL 222

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++ R +    ++++ G+ +   + + K      K   TI ++ 
Sbjct: 223 PMYGYAVVCIDDPVVRKILPRINR---KIITYGFSKDATLCIVKYYQYREKSNFTILIKN 279

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----- 351
            K+   +   PG     NA  +  + I  GI   ++L+ +        RFEF+G      
Sbjct: 280 NKELQVVLNTPGYHNALNAAASIAVAIEEGIRDTVILKSMSNFTGTNRRFEFLGNYPLNI 339

Query: 352 -NSRGGRIYV--DYAHTSNSLEMILKNIRTITSG-RIIVVF 388
            N R G++ V  DY H    L   +  IRT  S  R+++VF
Sbjct: 340 INGRVGKVMVIDDYGHHPAELRSTIIAIRTGWSDHRLVMVF 380


>gi|34763170|ref|ZP_00144137.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237742554|ref|ZP_04573035.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
 gi|27887168|gb|EAA24272.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229430202|gb|EEO40414.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
          Length = 611

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 165/379 (43%), Gaps = 54/379 (14%)

Query: 2   KLQDLIY---KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK 53
           K + LIY   KDF E++     N+L IF    ++ +I  V  DSR +  G +F AI    
Sbjct: 168 KNETLIYENLKDFSEILKRGKLNEL-IFEEFSKKVQIKNVVMDSRKVIEGSLFFAI---- 222

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            +G+ ++   + +G  ++V++    ++D          ++ V +T   +   A++   K 
Sbjct: 223 NNGNSYVKDVLDKGT-SLVIADNTDIKD--------KRVIKVTDTIATMQDLATKYRNKL 273

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++    V        L S +     T  ++  +N +  P  +     
Sbjct: 274 DIQVVGITGSNGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL----- 320

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMR 232
           L+    +    + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  
Sbjct: 321 LNVTDEEKFVVLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTE 379

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L  E + KE+   +  DD Y              V  VG+     +  +     NK    
Sbjct: 380 LL-EFVDKEN-TFVCGDDEYL---------GKLDVNKVGFNENNTYKIESYEFSNKGSKF 428

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I ++GK+++    L G+  + N  +A  L   IG+    + + L+++ +   RF+ +   
Sbjct: 429 I-LDGKEYE--MSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI- 484

Query: 353 SRGGRIYVDYAHTSNSLEM 371
             G  IY++ A+ ++ + M
Sbjct: 485 --GNDIYINDAYNASPMSM 501


>gi|303228388|ref|ZP_07315221.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516890|gb|EFL58799.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 460

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 170/428 (39%), Gaps = 73/428 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           QG +A+V S+A         IR + P +V    +    L  S +        N +AV G 
Sbjct: 63  QGVDAVVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTNGIAVAGA 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S  S + QI     L   Q+ PT  I               YL K  S L     +
Sbjct: 114 HGKTSTTSMIGQI-----LVEGQMEPTVIIGGEVD----------YL-KGSSCLGKGEYS 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V  + S     + R   I +     TN+  DH+D+++T +   NA  + F E LP +  
Sbjct: 158 VVEADESDGSFLKLRPKTIVI-----TNIEDDHMDHYKTMENLLNAFCQ-FVETLPVDGK 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEG 297
           A++  D+   + VM +      + ++ G      Y  K IH +    +++     +  +G
Sbjct: 212 AVVCGDNDNIRYVMSKVER---QFITYGLEDSNDYVAKNIHYEDSSLVYD-----VVHKG 263

Query: 298 KDFDFL-FPLPGEFQVYNAL---VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +   +PG   V N+L   + A  C  + + S  +++ L K      RFE  G + 
Sbjct: 264 ETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPS--IVKALGKFIGAKRRFETKG-HV 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK----IALDL 409
            G  +  DYAH    ++  LK  + +   R+I VF       +  R  + K     A   
Sbjct: 321 AGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVF----QPHRYSRTSLLKDEFATAFTS 376

Query: 410 ADIAIVTDDNPRSEDP---------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           AD   +TD     EDP           I +E+ H    ++E  N + A+   +  +   D
Sbjct: 377 ADEIYMTDIYSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLAKV--VRPND 434

Query: 461 VLVVAGKG 468
           +++  G G
Sbjct: 435 LVITMGAG 442


>gi|255524030|ref|ZP_05390992.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296186887|ref|ZP_06855288.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
 gi|255512317|gb|EET88595.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296048601|gb|EFG88034.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
          Length = 458

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 115/296 (38%), Gaps = 49/296 (16%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNR 161
           F   L   H  N+ A+ GT GK++  S V  I   + L      PT  +         N 
Sbjct: 103 FLGHLMKGHKFNV-AIAGTHGKTTTTSMVSHIFLNANLD-----PTILVGGQLDAINGNV 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            T  S  +L +A  Y  S                   L     I G   N+  DH+D+++
Sbjct: 157 RTGNSEYFLTEACEYKGS------------------FLKFFPYI-GVILNIDADHLDFYK 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK- 280
                 NA ++ F +L+PK    I Y +D    +V+   +   C VL+ G     +  K 
Sbjct: 198 DIDDIQNAFIK-FAKLIPKNGYLICYGEDPRMGKVISECN---CNVLTYGLTNGNVVAKN 253

Query: 281 -----KVCA---IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                K CA   ++   ++  SV+         +PG+  + NAL +  + +++ I + L+
Sbjct: 254 MKFDEKGCASFDVYAANEMITSVK-------LNVPGKHNILNALASICVSLSLDIPTNLI 306

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            + LE       RFE  G    G  +  DYAH    ++  L   +     +I  VF
Sbjct: 307 SKGLESFKGTHRRFEIKGV-KNGITVVDDYAHHPTEIKATLSAAKNYPHNKIFCVF 361


>gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
 gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia
           rickettsii]
 gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 449

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 157/384 (40%), Gaps = 71/384 (18%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q         G  
Sbjct: 75  KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + ++G    ++S A D    T   I+           G+ H        G  +  +  +K
Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------QGEIRELVQILK 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258
                 TN+   H+++  + +    AK  +F     K   A+I AD + Y+K   ++K  
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233

Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308
                    R+      ++     G+ ++LK              +  K  D   P +P 
Sbjct: 234 SITDIHSFGRSAKTSAELMLYENLGEQVYLK------------YKINNKVLDVTIPFIPR 281

Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            F + Y  ++   L I I G D  +   HL  +    GR E +  N +  R+  DY + S
Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336

Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389
             S++  L+ ++ + +     + G
Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360


>gi|319791666|ref|YP_004153306.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
 gi|315594129|gb|ADU35195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
          Length = 735

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 24/122 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           +LAVTGT+GK++V +   Q+ +R+G S   +  IGPT                   L   
Sbjct: 345 VLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPT------------------LLDTL 386

Query: 174 LSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +++ ++ +  V V E SS  LD   + G +  A +  NL +DH+D+H    AY  AK R
Sbjct: 387 AAHIDAETLPDVWVLELSSFQLDG--VQGFEPTAATVLNLTQDHLDWHGDMPAYAAAKAR 444

Query: 233 LF 234
           +F
Sbjct: 445 IF 446


>gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010]
 gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010]
          Length = 826

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 160/356 (44%), Gaps = 34/356 (9%)

Query: 27  ERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           E  I+ + +DSR +      +F A+   + DG+ +IP+  ++G    VV +     D   
Sbjct: 21  ETNISFLLTDSRSLCFPEETLFFALKSERNDGYHYIPELYSRGVRNFVVEAIPENWDM-- 78

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +   +  L V  T + L   A+    +    ++ +TG++GK+ V  ++ Q+     LS 
Sbjct: 79  -LYPQSNFLEVSKTIEALQRLATCHRAEFHVPVIGITGSNGKTVVKEWLYQL-----LSP 132

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            ++    T S  + ++++  P  ++L   L+  +  GV    +  S  G  +   + I+ 
Sbjct: 133 NKV---VTRSPRSYNSQIGVPLSVWL---LNEQTEVGVFEAGI--SERGEMKALREIIQP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNA 263
             G FT+LG  H      Q+ + + + +  E+L L +++ AI+Y  D   + V++     
Sbjct: 185 TIGVFTSLGEAH------QENFASLEEKCMEKLCLFRDTNAIVYPLD--EELVVRCIKTL 236

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVA 318
             +   +G+  K  +         K ++T ++     +GK+  +  P   +  V N++ +
Sbjct: 237 NYKNTILGWSKKDSNATLFVKEIKKAELTTTITYVWQQGKEASYTIPFIDDASVENSITS 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           A +C+ +G++   + E + +L  V  R E V     G  +  D Y    NSL++ L
Sbjct: 297 AIICLHLGVEVKTLAERMPQLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIAL 351


>gi|326390379|ref|ZP_08211938.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993656|gb|EGD52089.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 876

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 158/376 (42%), Gaps = 38/376 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK++V      I +  G   + +G T T   +  D  +          A + 
Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID  +T +  A+  A   
Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288
           L  E + ++  +++ ADD  +  + +RA   G  +    Y        H++K   A++ K
Sbjct: 594 LVVEAVKEDGYSVLNADDPMTTYLAQRAK--GKIIYFSMYDNNLTVKKHIEKGGIAVYVK 651

Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             V +   G      K  +    L G+  + V NAL A      + +   ++ + ++  +
Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFY 711

Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 PGRF     N    R+ VDY H    ++ +++  + + + R+I V G  GDR  
Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRIN 769

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKG------NRIEA 448
                +G+I     D   V +D + R   P ++   +  G I G I++          EA
Sbjct: 770 SSILKVGEICGQGFDFIYVKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEA 829

Query: 449 IRTAIEMLNKQDVLVV 464
           +R A+      D++VV
Sbjct: 830 LRAAMYNAEGGDLIVV 845


>gi|320011285|gb|ADW06135.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 493

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 26/166 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LAVTGT+GK++    +  I + +GL +  +G                
Sbjct: 124 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIG------------- 170

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + L  A+  L  +    ++VE SS+ L  H    ++  +G+  NL  DH+D+H +  
Sbjct: 171 ---VSLLDAV--LGDETYDVLAVELSSYQL--HWAPSLRAHSGAVLNLAPDHLDWHGSMA 223

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL 268
            Y   K R++E      S A +Y A DA ++++++ A    GCR +
Sbjct: 224 GYAADKGRIYE----GNSVACVYNAQDAATEDLVREADVEEGCRAI 265


>gi|304317204|ref|YP_003852349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778706|gb|ADL69265.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 454

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-- 268
           N+  DH++ H+T + Y N K R+FE     E   + Y D    K +      A C+V   
Sbjct: 184 NITPDHLNRHKTLENYINIKGRIFENQSFNEYTVLNYDD----KNISSLFDRAKCKVFPF 239

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
               + Y+G ++   K+    N ++ TI     D + ++ +PG   V NA+VA+ +    
Sbjct: 240 SMEKILYRGTYVENGKIVISSNGEKNTII----DINDIY-IPGNHNVENAMVASTMAFLA 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFV 349
           GID  ++   L+    V  R EFV
Sbjct: 295 GIDVNIINTTLKTFKGVEHRIEFV 318


>gi|13471551|ref|NP_103117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mesorhizobium
           loti MAFF303099]
 gi|30316110|sp|Q98KB1|MURD_RHILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|14022293|dbj|BAB48903.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Mesorhizobium loti
           MAFF303099]
          Length = 466

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 101/242 (41%), Gaps = 40/242 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TGT+GKS+  +    I + +G  + Q+G     +    D     P P         
Sbjct: 116 FIAITGTNGKSTTTALTAHILKSAGRDT-QMGGNIGRAVMTLD----PPKPD-------- 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  H  VE SS+ +D      I   AG   NL  DH+D H T Q Y + K    E 
Sbjct: 163 ------RHFVVECSSYQIDL--APSINPTAGILLNLTPDHLDRHGTMQHYASIK----ER 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHNK 288
           L+     AII  DD++  ++ +R   AG +V+ +        GY     +L +  A+H +
Sbjct: 211 LVAGSETAIIGIDDSWCAQIAERLERAGQQVIRISKRLPLTDGYFADGTNLME--AVHGR 268

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                 +EG     +  L G+    NAL A   C+ +G+D   +   LE    +  R E 
Sbjct: 269 YSKVAFLEG-----IGSLRGQHNAQNALAAVAACLKVGLDLGEIQSGLESFPGLAHRMEQ 323

Query: 349 VG 350
           VG
Sbjct: 324 VG 325


>gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
 gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
          Length = 468

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 151/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G             +   + I   G   D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A +   LE    V GR + V     S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAIKAGLEAFAPVKGRLQVVRAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
 gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
          Length = 476

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 36/367 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR    G +FVA+ G + DGH F+ +  A GA   VVS  + ++  +     +   LV 
Sbjct: 37  DSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRFLVA 96

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+  K     A+    +    ++ + G++GK++    +  +      +SF +     ++ 
Sbjct: 97  DDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLS----TSFNV----LVTQ 148

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSFTNL 212
              +N L  P        L+ L  +  T V+V     +H  +   L  + K   G  TN+
Sbjct: 149 GNYNNHLGVP--------LTLLQMRRDTEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNI 200

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNAGCRVLS 269
           G +H+++  +     +A+  LF  L      A +  DD   A +   + R    G +  +
Sbjct: 201 GHEHLEFFGSLDGVADAEAALFRYLEAHGGTAFVNLDDHRLAAAGASLSRKTGYGAQPGA 260

Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               G+    +++ A    +   T+  E G          G   V NA+ A+ +    G+
Sbjct: 261 ----GRAWWAEQIGADRVGRVSFTLCSESGVHQPVAMQFVGRHNVINAVAASAVGAHFGL 316

Query: 328 DSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-TSG 382
             A + E L  L    G  R E       GG + ++  + +N  S+ + L  +  I   G
Sbjct: 317 APAHIAEGLGTLLPAKGWKRMELF---EDGGIVVLNDTYNANPDSVRLALDTLAAIECRG 373

Query: 383 RIIVVFG 389
           R I V G
Sbjct: 374 RRIAVLG 380


>gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
 gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
          Length = 490

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 125/336 (37%), Gaps = 67/336 (19%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I E S DSR      IFV I+G + D H FI  A+              L+ F      N
Sbjct: 49  IKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDGALKINGATFTSEHDEPLEGF-----EN 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142
            P + V +T + +    +    +    ++AVTG+ GK++    +       +++ Q  G 
Sbjct: 104 KPWIKVADTVEAMQKVGTFYRNRMNLPVVAVTGSVGKTTTREMISTVLASQKKVFQTIGN 163

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + QIG   T+S   +++ +                      + +  S  G  +   + I
Sbjct: 164 QNSQIGVPLTLSHLTREDEIAV--------------------LEIGMSERGQIEKLTNMI 203

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      T +G  HI   +TQ+     KM + +  LP++    +  DD +          
Sbjct: 204 RPNVAVVTMIGVSHIAQLKTQENICLEKMDIVKG-LPEDGMVFLNGDDKF---------- 252

Query: 263 AGCRVLSVGYQGKFIH------LKKVC-----AIHNKQQVTI----SVEG---KDFDFLF 304
                    Y+GK  H      + K C      +H K   TI      EG   KD + + 
Sbjct: 253 ------LAPYRGKLSHKTFFYGMDKACDYRAENVHVKDGQTIFHFFYKEGKVVKDMEVVL 306

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              GE  V NALVA G+   +G+D     + L   H
Sbjct: 307 GTMGEHNVRNALVALGVAHQMGLDMKAAAKALVTFH 342


>gi|45658139|ref|YP_002225.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45601381|gb|AAS70862.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 466

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 25/292 (8%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +FV ++GN+ DGH FI  AI++GA   +V   + +   +  +   +  + V NT   L  
Sbjct: 45  LFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYK-NLNLEEKSKAIPVKNTLTALGK 102

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            AS    +    ++AVTG+SGK++    +    +    S+        ++    +N +  
Sbjct: 103 LASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESAL------VVTEKNYNNEIGL 156

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQ 223
           P  ++       +S Q    V     +H  +  RL  I K      T +G  HI++ ++Q
Sbjct: 157 PFTLF------KISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQ 210

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           +    AK  + E L  K+   + Y +   YSK +  +    G +++           +K+
Sbjct: 211 KNIAKAKGEIVEGL--KKGGKLFYPNTGEYSKILKNKTRKHGNKLV-------LTKSEKI 261

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +I  K+     +E K+    + LPGE  + N  VA     AIG     + E
Sbjct: 262 FSILQKKSSGFLLEYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQE 313


>gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
 gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
          Length = 455

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 123/314 (39%), Gaps = 23/314 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VSSDSR I    +FVA+ G K DGH F   A+  GA A++V     L         N   
Sbjct: 27  VSSDSRVIPEHTLFVALKGEKFDGHDFANMAVENGATALLVDHELPL---------NIAQ 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +T+K +    + L        +A+TG++GK+SV   V  I  +     +  G    
Sbjct: 78  LIVKDTQKAMGDLGAYLRELIQPKSVALTGSNGKTSVKEMVATILSQRHKVLYTAG---- 133

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  +N +  P  +   +A       GV  +   A+  G   +    +K       N+
Sbjct: 134 --NF--NNEIGVPLTLLRLEADDEF---GVFELG--ANHQGEIDYTSSLVKPDVALVNNV 184

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++   +      AK  +F  L      A+I ADD ++  ++  + +       V  
Sbjct: 185 ASAHLEGFGSLAGVACAKSEIFNHL-AATGTAVINADDQFASVMLSASMSFTQLTFGVES 243

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +                +  +S   +      PL G  QV NAL A  +C++ G+    +
Sbjct: 244 EADIQASDLEADSVGCYRFKLSYMQESVLIALPLSGRHQVSNALAATAICLSFGLTLDEI 303

Query: 333 LEHLEKLHVVPGRF 346
              L  L  V GR 
Sbjct: 304 KLGLSLLLPVKGRM 317


>gi|314978259|gb|EFT22353.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA2]
 gi|315088657|gb|EFT60633.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA1]
          Length = 471

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESIGTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L   L   R + + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415


>gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
 gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
          Length = 459

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 141/333 (42%), Gaps = 50/333 (15%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ +S+D+R + AG +F+A+ G + D H F+ QA+A+GA A VVS    L D S    
Sbjct: 25  QTVSHISTDTRTVAAGALFLALQGERFDAHQFVAQAVAKGAVAAVVS--RPLADVS---- 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------- 140
              P ++V +TR  L   A+ +  +    I+A+TG+ GK+++      I Q++       
Sbjct: 79  --IPQILVADTRIALGQIAAWVRAQLDLQIVAITGSCGKTTLKEMCAAILQQAAPVLATQ 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  + +IG   T+     D+R       Y    L      G  H    A +  L      
Sbjct: 137 GNLNNEIGVPQTLLRLTPDDR-------YAVVEL------GANHPGEIAWTTSL------ 177

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---YSKEVM 257
            +K       N+   H+    + +    AK  +F   L     A+I AD     + +E++
Sbjct: 178 -VKPDVAVINNVAAAHLAGFGSLRGVAVAKTEIFSG-LSDSGTAVINADSEFYDWWREIL 235

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----ISVEGKDFDFLFPLPGEFQVY 313
                   R  S G +      +      ++Q +     IS  G+  D   P+PG   V 
Sbjct: 236 S------VRTFSFGVENPKADFRAENITQDEQGIAAFTLISPLGQ-IDIQLPIPGLHNVS 288

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA +  ++G+    V   L  +  V GRF
Sbjct: 289 NALAAAAVTTSLGLSLVQVQSGLANMLPVKGRF 321


>gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 194

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 6/114 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW + ++  V+ DSR+++AG +FV + G ++DGH ++ +A   GA+A + +     +D  
Sbjct: 20  QWGDIEVRSVAFDSRNLEAGGLFVPLKG-EQDGHQYVAKAFENGAKATLWA-----KDHP 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                  P LVVD+  + L         K    ++AVTG++GK++    V  I 
Sbjct: 74  YDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTKDMVASIL 127


>gi|18146159|dbj|BAB82199.1| UDP-N-acetylmuramate-alanine ligase [Clostridium perfringens str.
           13]
          Length = 435

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 32  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 91

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 92  V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 146 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 185

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +   + K   T 
Sbjct: 186 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 241

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 242 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYKG 301

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   RI+ VF
Sbjct: 302 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVF 338


>gi|153009072|ref|YP_001370287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560960|gb|ABS14458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 467

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 52/281 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + SG    Q+G     +       LT   P          
Sbjct: 117 IAITGTNGKSTTTALIAHIIKASG-RDMQLGGNIGTAI------LTLEPP---------- 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q      VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 160 --QANRFYVVECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AI+  DD Y + +  R +  G  V+ +  +     G F    K+    + +   
Sbjct: 212 VAASDTAIVGVDDDYCEAIADRLYRDGVHVVRISKERHLGKGYFADGAKLLWSQDGEIDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK-LHVVPG---RFE 347
           I S+EG     +  L G     NAL A   C+++G    L LE ++  L   PG   R E
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAVVACLSVG----LSLEEIDAGLKSFPGLAHRME 322

Query: 348 FVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
            VG   RG  ++V+ +  +N      +L   L+NI  I  G
Sbjct: 323 QVG--HRGKVLFVNDSKATNAEATAPALSSFLQNIYWIAGG 361


>gi|84686331|ref|ZP_01014225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665514|gb|EAQ11990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 474

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS D+R +Q G +FVA+  +  DGH F+  A+A+GA A +VS           +R+ 
Sbjct: 23  VSGVSIDTRTLQPGDLFVALA-DVRDGHDFVKDALAKGAGAAMVSR------IPEGVRTT 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P+LVV++    L    +    +    ++A+TG+ GK+S    +  I  R
Sbjct: 76  DPLLVVEDVLPALERLGAAGRARTQARVVAITGSVGKTSTKEMLATILDR 125


>gi|150014970|ref|YP_001307224.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
 gi|189028985|sp|A6LPI8|MURC_CLOB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149901435|gb|ABR32268.1| UDP-N-acetylmuramate--alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 459

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 8/185 (4%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N+  DH+DY++      +  ++ F  L+P++   + YADD    E++   +   C 
Sbjct: 182 GIILNIDSDHLDYYKDIDEIADTFLQ-FSRLIPEDGYLVGYADDQRVNEILSETN---CN 237

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKD-FDFLFPLPGEFQVYNALVAAGLCI 323
            LS G+        K    +     T  V  +G + F+    +PG+  + NAL +  + +
Sbjct: 238 TLSYGFSDNANLTAKNIHFNTNGCATFDVYKDGNNLFNITLNVPGKHNILNALASICVSL 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              I +  ++E L        RFE+ G    G  +  DYAH    ++  L   + +   +
Sbjct: 298 IFNISNDCIIEGLSNCKGAHKRFEYKGK-LNGVTVIDDYAHHPTEIKATLSTAKQMNHNK 356

Query: 384 IIVVF 388
              +F
Sbjct: 357 TYCIF 361


>gi|237739352|ref|ZP_04569833.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
 gi|229422960|gb|EEO38007.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
          Length = 609

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 156/371 (42%), Gaps = 55/371 (14%)

Query: 9   KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           KDF E++     N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 174 KDFSEVLKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T  ++  I+ V +T   +   A++   K    ++ +TG+
Sbjct: 229 LDKGASLVIADN---------TDIADERIVKVADTIATMQDLATKYRNKLDIQVIGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +  +   +    G          +N +  P  +     L+    +   
Sbjct: 280 NGKTSTKDIVYSLLSKKAKTLKTEGN--------YNNHIGLPYTL-----LNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  L  E + KE+
Sbjct: 327 VLEMGMSSLG-EIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELL-EFVNKEN 384

Query: 243 PAIIYADDAY--SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              +  DD Y    +V K   N     +   Y+             + +    +++GK++
Sbjct: 385 -TFVCGDDVYLAKLDVNKIGFNEDNNFIIESYE------------FSDKGSKFTLDGKEY 431

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G+  + N  +A  L   IG+    + E L+ + +   RF+ +     G  IY+
Sbjct: 432 E--MSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMRFQEIRV---GEDIYI 486

Query: 361 DYAHTSNSLEM 371
           + A+ ++   M
Sbjct: 487 NDAYNASPTSM 497


>gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
 gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
          Length = 481

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGMPGRHIVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           I   + GR I V G
Sbjct: 369 IPEGSRGRRIAVLG 382


>gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri DSM 4166]
          Length = 458

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 16/126 (12%)

Query: 21  FPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            P+  R    +   + VS+DSR IQ G +F+A+ G + DGH ++ +  A+GA A +V+  
Sbjct: 12  LPLSGRLVGADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEVAAKGAVAALVARE 71

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  P LVV +TR  L    +  R   K P  + A+TG+SGK+SV   + 
Sbjct: 72  VE--------GAPLPQLVVADTRLALGRLGALNREAFKGP--VAAITGSSGKTSVKEMLA 121

Query: 135 QICQRS 140
            I + +
Sbjct: 122 SILRSA 127


>gi|108801628|ref|YP_641825.1| Mur ligase, middle region [Mycobacterium sp. MCS]
 gi|108772047|gb|ABG10769.1| Mur ligase, middle region [Mycobacterium sp. MCS]
          Length = 851

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 124/310 (40%), Gaps = 34/310 (10%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L V + R  L+  A      +P  I+AVTG++GK+S  + ++ + Q  G+      PT
Sbjct: 57  PRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGVPKR---PT 113

Query: 151 STISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              ++F   N     LT  +   +  A S+LS +G    +V              ++   
Sbjct: 114 KNFNTFDGVNGEVANLTNEAIAVIEVAASFLSQRGGPRPNV--------------LRPEV 159

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T++G  H++Y  + Q     K  +F+  L     A+I  D      +++RA  AG  
Sbjct: 160 AMITSIGEAHLEYFGSPQGVAEVKSNVFD--LMSRGTAVIPRDADTYDYMVQRARAAGAT 217

Query: 267 VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +S G +     HL    A      V   + G+   +     G     N++ A G+  A+
Sbjct: 218 TVSFGAHPSADAHLLSYSAADG--VVEAEIFGERITYELGALGRHFARNSVGALGVVAAL 275

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN------SLEMILKNIRT 378
           G+D       L     V GR       S  GR   +D A+ +N      ++EM+ +   T
Sbjct: 276 GLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERA-T 334

Query: 379 ITSGRIIVVF 388
              GR I V 
Sbjct: 335 PPRGRRIAVL 344


>gi|15607039|ref|NP_214421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
 gi|30315978|sp|O67852|MURD_AQUAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2984290|gb|AAC07814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
          Length = 415

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 111/278 (39%), Gaps = 42/278 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT GKS+       I ++     F+ G    I     +  L  P  I + +  S+
Sbjct: 86  VIAITGTDGKSTTTRLTYLILKKFFDEVFEAG---NIGKPFSEVVLENPEGIAVLEVSSF 142

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG T               L   +   G+F +   DH+D+H + + Y  +K R+FE 
Sbjct: 143 ---QGKT---------------LKTFRPNIGAFISFSVDHLDWHPSIEDYLKSKYRIFEN 184

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               E   +I  D  Y  E+ K    A   + S  Y        K   + N + + I   
Sbjct: 185 --QTEEDFLILNDLVY--EIKKTPSRARKVLFSELYINSDSVFYKDIRLFNPKNLKIR-- 238

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                      G   VYNA VA+ + + +G+      E + +   +P R EF+G N  G 
Sbjct: 239 -----------GLHNVYNASVASLIALTLGLKPEDFEEVIYEFRGLPHRLEFLG-NFNGV 286

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +Y D    S +   ++  ++T     +I++ G G D+
Sbjct: 287 EVYND--SKSTTPHALMHALKTFPDNSVILIVG-GKDK 321


>gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
 gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
          Length = 470

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 4/112 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E + + V +D+R +  G +FVA+ G + DGH F+  A   GA A +V +A+S     A +
Sbjct: 21  EGRFDSVGTDTRALAPGQLFVALRGERFDGHDFVADAAKAGAAAAMVDAAWSAGKADAGL 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
               P+LVVD+TR+ L   A+    +    ++ VTG++GK++V      I +
Sbjct: 81  ----PLLVVDDTRRALGTLAAAWRARFALPLIGVTGSNGKTTVKEMCAAILR 128


>gi|298531031|ref|ZP_07018432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509054|gb|EFI32959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 433

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 32/177 (18%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           QGA+ +VVS   SL    A +R   P    V +  +  S F S       E ++AVTGT+
Sbjct: 73  QGADLVVVSPGISL----AMVRGLCPAGQTVISELELASWFIS-------EPVIAVTGTN 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +Q++ +++G   F  G   T  S   D+ L+      L   +S    QG + 
Sbjct: 122 GKTTTCMLIQKVLEKAGRRVFTGGNIGTPLS---DHVLSGKRADILVLEVSSFQLQGCS- 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   G   H         G   N   +H+D+H+++  YF AKM+LF    P +
Sbjct: 178 --------GFTPH--------VGVLLNFSANHLDHHESEDEYFRAKMQLFARQGPMD 218


>gi|149007559|ref|ZP_01831194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
 gi|147760918|gb|EDK67888.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
          Length = 353

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 26/263 (9%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A     +  +L    
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  +    +      +T+   +F + + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKR 259
           LL + S A+I   D     V+K 
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKE 253


>gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
 gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
          Length = 458

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 16/126 (12%)

Query: 21  FPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            P+  R    +   + VS+DSR IQ G +F+A+ G + DGH ++ +  A+GA A +V+  
Sbjct: 12  LPLSGRLVGADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEVAAKGAVAALVARE 71

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  P LVV +TR  L    +  R   K P  + A+TG+SGK+SV   + 
Sbjct: 72  VE--------GAPLPQLVVADTRLALGRLGALNREAFKGP--VAAITGSSGKTSVKEMLA 121

Query: 135 QICQRS 140
            I + +
Sbjct: 122 SILRSA 127


>gi|12655906|gb|AAK00649.1|AF227236_1 FolC-FolP fusion protein [Halobacterium salinarum]
          Length = 816

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 13/185 (7%)

Query: 287 NKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVP 343
           N  +  +S+ G D+      PL G+ Q  NA VAA L     G+D   +   L   H  P
Sbjct: 234 NHTEAAVSITGDDWSVATEIPLLGDHQAENAGVAAALARQTAGVDDDAIARGLRSAH-WP 292

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GRFE +G +     + +D AH   +   + + +      R++ VFG   D+D G      
Sbjct: 293 GRFEVMGADP---VVVLDGAHNPGACGAVAETVAEFDYDRLLTVFGAMHDKDHGAM---- 345

Query: 404 KIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDV 461
             AL   D     +  P R+ED + + A       G +     +E A+  AI      D+
Sbjct: 346 AAALPTPDHVWACEPVPDRAEDADVLAAVFEDAGAGTVSVTRAVESAVADAIAEATADDL 405

Query: 462 LVVAG 466
           ++VAG
Sbjct: 406 VLVAG 410


>gi|89895933|ref|YP_519420.1| hypothetical protein DSY3187 [Desulfitobacterium hafniense Y51]
 gi|89335381|dbj|BAE84976.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 439

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 33/310 (10%)

Query: 171 AKALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDY-HQTQQAYFN 228
           A AL Y + Q V  V +E    G +D   +  +K +    TN+G DH+DY  +T +    
Sbjct: 130 AMALMYFADQKVDLVLLEVGLGGAIDSTNV--VKPLISVITNVGMDHMDYLGETYEEIAG 187

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            K  +      K     + A D    EV+    K+A      +  VG   ++  ++    
Sbjct: 188 VKAGII-----KAGAITVTAAD--RPEVLNVIRKKAQEMNSPLWVVGDDVRW-EIRWSGE 239

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH---LEKLH- 340
           +  +  +   + G        L GE QV NA  A  +C  +  +  + LE     E L  
Sbjct: 240 LEQEFDLA-GLRGAYNKLRLRLVGEHQVVNAATAVTVCELLKFEYGMNLERRNIYEGLRK 298

Query: 341 -VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            V PGR E +    +   + +D AH  +    + K +      R+++  G  GD+++ K 
Sbjct: 299 AVWPGRLELLSLKPK---VLIDGAHNVDGAHALAKALNIFQRQRLVLCLGMLGDKEREK- 354

Query: 400 PIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEML 456
             +  I + LAD  I+T  N PRS + E +  E++   G P    +  R+ A+  A   L
Sbjct: 355 --VVDILVPLADEVIITKPNSPRSGNWEYLH-ELVKEKGKPVLTIEEPRL-AVEEAFRRL 410

Query: 457 NKQDVLVVAG 466
           +K+D+L V G
Sbjct: 411 DKEDMLCVTG 420


>gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA2]
          Length = 485

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 27/160 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P LVV
Sbjct: 31  DTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LPHLVV 81

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
           D+ +  LS  A  +     E    I+A+TG+SGK+S    + QI     L +F  GPT +
Sbjct: 82  DDGQAGLSRLARHVVATERERGMRIIALTGSSGKTSTKDMLAQI-----LETF--GPTVA 134

Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186
            + SF  +N +  P     S    +  +S + ++G+ H+S
Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172


>gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
          Length = 471

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 42/237 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR    G +FVA  G + DGH F    +  GA A++            T     P 
Sbjct: 31  VVRDSREAGPGSLFVAFAGERVDGHDFAAAVVGAGAVAVL-----------GTRPVGVPA 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF------- 145
           +VVD+ +  L   A  +  +    ++A+TG++GK+S    + Q+ QR   + F       
Sbjct: 80  IVVDDVQTALGALARHVVRRLGATLVALTGSAGKTSTKDLIAQVLQRKAPTVFTPGSLNN 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   T  S  ++ R            +  + ++G+ H+   A   GL   ++      
Sbjct: 140 EIGLPLTALSATEETRFL----------VLEMGARGIGHIRYLA---GLTPPKI------ 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---PAIIYADDAYSKEVMKR 259
            G   N+G  HI     ++    AK  L E  LP E+    AI+ ADD Y + +  R
Sbjct: 181 -GLVLNVGSAHIGEFGGREQIAQAKGELVEA-LPSEAEGGTAILNADDPYVRAMASR 235


>gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 460

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/361 (19%), Positives = 138/361 (38%), Gaps = 58/361 (16%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  DF  L N L+    Q   + +  +++D+R +  G +F+A+ G   DGH FI +A  
Sbjct: 1   MIPMDFDWLANVLTT-DYQGDNQHVLNINTDTRTVCGGEVFLALKGPNFDGHKFIAEAKQ 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  ++V     +         + P  +V +TR  L    + +  +     +A+TG+ G
Sbjct: 60  KGAIGVIVQHKVDV---------DIPQFIVSDTRIALGAIGTAVMAQVAPKTIAITGSVG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    V+++C  + + S      +T  +F  +N +  P                +T +
Sbjct: 111 KTT----VKEMC--AAILSVHGDVLATKGNF--NNDIGVP----------------LTLL 146

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLG-----------------RDHIDYHQTQQAYFN 228
            +E       QHR   I+L A     +                    H++   +      
Sbjct: 147 RLEP------QHRFAVIELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAK 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+  L  +  AI+  D  +S+  + +      +  S   +            + +
Sbjct: 201 AKGEIFDG-LKDDGVAIVNCDSEFSQYWLDKLEGRNVKCFSTTEKLDIWAENITLDANAR 259

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+  + K       LPG+  + NAL+AA L     +    +   L  +  V GR   
Sbjct: 260 ASFTLCTKNKQVPVTLALPGKHNISNALIAAALTSEFDVTLEEIANALATMGDVKGRVNL 319

Query: 349 V 349
           +
Sbjct: 320 I 320


>gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
 gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
          Length = 482

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 153/383 (39%), Gaps = 41/383 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R    V  DSR +    +FVA  G + DG+ F P AI  GA A+V++   + +     +
Sbjct: 23  DRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVVMTCEPTRELVDLAL 82

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + ILV ++  +FL   A     +    ++ +TG+ GK++    +     +     ++
Sbjct: 83  EHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDVLAACLAK----RYR 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQHRLDGIK 203
           +   +T  +F   N L       +   L+ LS+   T + V     S  G  +      +
Sbjct: 139 V--HATAGNF---NSL-------IGLPLTILSAPADTQMLVLEMGMSDFGEIERLSRCAQ 186

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-------EELLPKESPAIIYADDAYSKEV 256
              G  T +G  HI    +++    AK  +        E      S  +++ +D ++  +
Sbjct: 187 PTFGIITKVGTSHIGMLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFTPFI 246

Query: 257 MKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISVE-GKDFDFLFPLPG 308
           ++  A  AG  V+  G          VCA H +          ++ E G  F     +PG
Sbjct: 247 IENFARPAGLDVVLAGTSTD----DDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA +   +G+    + E   +L +  GR   V   + G R+  D Y  +  
Sbjct: 303 AQSVPNALFAAAVAHRLGVPGFEIDEAFGELQMT-GRRTQVRHAACGARVIDDSYNASPE 361

Query: 368 SLEMILKNIRTI-TSGRIIVVFG 389
           S+   L    T+  +G  I V G
Sbjct: 362 SMAAGLNLFSTLPCTGSRIAVLG 384


>gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 472

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 151/376 (40%), Gaps = 51/376 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V  DSR ++ G +FV + G   DGH +I QAI  GA A + S     ++  A     
Sbjct: 27  VTGVEFDSRKVKPGDLFVPLSGGATDGHDYIQQAIKNGAVATLWS-----KEAQAAPADQ 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I++VD+T   +   A+         ++ +TG++GK++       + +    + +++  
Sbjct: 82  IAIVLVDDTLVAMQALANYYRNSLNPKVIGITGSNGKTTTKDMTANVLK----AKYKVHK 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLIA-- 206
           T        +N +  P          Y   Q      V     G+ D   ++ +  IA  
Sbjct: 138 TEG----NYNNEIGLP----------YTLLQMPADTQVVVCEMGMSDFGEIEVLSKIAQP 183

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMK----R 259
                T +G  H+++  ++     AK+ + + L  KE    IY A++   +E  +    R
Sbjct: 184 DIAVITLIGESHLEFLGSRANIAKAKLEILKGL--KEDGLFIYPANEPLLQEAGQALGDR 241

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           A + G    +  Y       K     H     QV  S+         P+ G + V NA++
Sbjct: 242 ARSFGLDNTADFYAYDLKEDKNKTYFHTNIDDQVLCSI---------PVMGAYNVGNAMI 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN- 375
           A  +   + +     +  L +  +   R E++ T S G  I  D Y  +  S++ +LK+ 
Sbjct: 293 ALTVAQELKVPIEQAIFQLSQFKLTKNRLEWL-TASNGASILNDAYNASPTSIKAVLKSF 351

Query: 376 --IRTITSGRIIVVFG 389
             + T   GR +V  G
Sbjct: 352 SQVETQAEGRRLVALG 367


>gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Azorhizobium caulinodans ORS 571]
 gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium
           caulinodans ORS 571]
          Length = 476

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 145/368 (39%), Gaps = 28/368 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S D+R ++ G  F AI G   DGH ++ +A+  GA   VV +A  +Q        +
Sbjct: 27  VTGISIDTRTLEPGDAFFAITGENSDGHAYVAKALENGASLAVV-AADRVQGL-----PD 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV +    L+        +    I+AVTG+ GK++    ++      G        
Sbjct: 81  GPLVVVPDVLGALTDLGKAARARSEARIVAVTGSVGKTTTKEALRIALSADG-------- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +  S+ + +N      P+ LA+     +  GV  V +          R+  ++      
Sbjct: 133 ETHASAASYNNHWGV--PLSLAR-FPRSARYGVFEVGMNHPGEITPLVRM--VRPHVAVI 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268
           T +   HI      +   +AK  +F+ L P  + A++  D+     ++  A   G + ++
Sbjct: 188 TTVEAVHIAQFSGIEEIADAKAEIFDGLEPGGT-AVLNRDNPLFDRLVASARAKGVKNIV 246

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S G      + LK V        V   V G    F   +PG   V NAL        +G 
Sbjct: 247 SFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALAVLAAVRLLGG 306

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM-----ILKNIRTITS 381
           D AL    L +L   PGR   V  +  GG    +D ++ +N   M     +L        
Sbjct: 307 DLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAIDVLSRTPVGPR 366

Query: 382 GRIIVVFG 389
           GR I V G
Sbjct: 367 GRRIAVLG 374


>gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 121/331 (36%), Gaps = 51/331 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +  
Sbjct: 22  QVSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSR------IPEGVGE 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI- 147
           +  +L+VD+ +  L         +    ++AVTG+ GK+S    +  +    G +   + 
Sbjct: 75  DGRLLLVDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHASVA 134

Query: 148 ------GPTSTISSFAQDNRLTT-------PSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                 G   T++   +D            P  I      + L+ Q   HV++       
Sbjct: 135 SYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEI------APLARQARPHVAM------- 181

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                          T +   H++           K  + E L P    A++ AD A + 
Sbjct: 182 --------------VTTVAAVHLEAFDDVAGIAREKAAIMEGLEPG-GVAVLNADIAEAD 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             + RA   G R LS G   +   L  V                   F     G     N
Sbjct: 227 --ILRAAARGARQLSFGRAAQDYRLTGVEVADGMTHARADTPAGPVSFTLQSAGTHFAMN 284

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           AL A   C A+G D+   L+ LE+     GR
Sbjct: 285 ALGALACCDALGADAGQSLQGLERWTPYKGR 315


>gi|294787657|ref|ZP_06752901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
 gi|294483950|gb|EFG31633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
          Length = 443

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 32/259 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L     + I+A+TG++GK++  S V  +C++SGL +   G        A   R    + +
Sbjct: 102 LLKNQSDKIIAITGSNGKTTTTSLVGYLCEQSGLDTVVAGNIGMPVLEAWLVRGGKSADV 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           ++                +E SS  L+    D +   A +  N+  DH+D +     Y  
Sbjct: 162 WV----------------LELSSFQLETT--DYLDADAATCLNISEDHLDRYDDLLDYAR 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K  +F      ++  ++ ADDA+    MKR  N      S+  Q    +L  V      
Sbjct: 204 TKDMIFN----GKAIQVLNADDAFCC-AMKR-ENRPIHYFSLS-QSIDYYLDSVSGSLKH 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q   +  +        PL G   V N L A  LC ++G+  A +L+++     +P R E 
Sbjct: 257 QGADLMPQTD-----IPLQGSHNVANVLAALALCESVGLARADLLKYIRVFKGLPHRVEK 311

Query: 349 VGTNSRGGRIYVDYAHTSN 367
           VG   + G I++D +  +N
Sbjct: 312 VG--EKNGVIFIDDSKGTN 328


>gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
 gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
          Length = 453

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 161/383 (42%), Gaps = 52/383 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I EV +D+R + AG +FVA+ G + D H F   A+A GA A++VS   +L       
Sbjct: 21  DSQIIEVKTDTRKVTAGCLFVALKGERFDAHDFAAAAVAAGAGALLVSQRLAL------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P LVV +TR  L   A+ +  + P  ++++TG+SGK+SV      I    G   + 
Sbjct: 74  --DAPQLVVADTRLALGQLAAWVRQQVPARVVSLTGSSGKTSVKEMTAAILSECGEVLYT 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--------GVTHVSVEASSHGLDQHR 198
            G      +F  D        I +   L  L  Q        G  H+   A +  L + +
Sbjct: 132 AG------NFNND--------IGVPLTLLRLQPQHDFAVIELGANHIGEIAYTSALARPQ 177

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD--DAYSKEV 256
                       NL   H++   +      AK  +F  L P +  AII AD  D    + 
Sbjct: 178 AA-------LINNLAAAHLEGFGSLAGVAQAKGEIFTGL-PTDGVAIINADNNDWPHWQS 229

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M       C         +F    +V    N  Q  +       + + PLPG   V NAL
Sbjct: 230 MLDGKTVWCFSPQATAGVEFFA-SEVRGDGNGTQFQLHSPFGSAEIVLPLPGRHNVANAL 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN--SLEMIL 373
            AA L +++G     V + L +L  VPGR F  V   +   ++ +D ++ +N  S+    
Sbjct: 289 AAAALAMSVGASLKAVRQGLSQLQAVPGRMFPIVLAAN---KLLLDDSYNANVGSMTTAA 345

Query: 374 KNIRTITSGRIIVVFGCGGDRDQ 396
           + +  +   R++VV    GD D+
Sbjct: 346 QVLAEMPGYRVMVV----GDMDE 364


>gi|310643587|ref|YP_003948345.1| udp-n-acetylmuramate--l-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309248537|gb|ADO58104.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 460

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 141/339 (41%), Gaps = 54/339 (15%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ IA GA+ +V S+A S  +          I  +  ++    L   R         +AV
Sbjct: 59  PEHIA-GADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLARLLNER-------KGIAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            G  GK++ +S +  + +R  +    I  G  + + + A+  +                 
Sbjct: 111 AGAHGKTTTSSMIALVMERCNVDPTYIIGGEITNLGTNAKAGK----------------- 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRL 233
           S+ V   + E+    L  H   GI       TN+  DH+     D+++ + AY    ++ 
Sbjct: 154 SEFVVAEADESDGSFLQYHPWQGI------VTNIEADHLENYDGDFNRLKSAY----VQF 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVT 292
             ++ P +  AI+ ADD   +E++ +      RV++ G + +  ++     + +++   T
Sbjct: 204 LSQIRP-DGAAIVCADDQNIREMLPQLQ---TRVITYGVEHEADYMATDIQLGDRRLSFT 259

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +S +G     +   +PG+  +YNA+     C+  GI    +   + + H    RF+ +G 
Sbjct: 260 MSRKGTALGTIELSVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFHGAKRRFQVLG- 318

Query: 352 NSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVF 388
              G  I +  DYAH    +E  +   R  T  RII VF
Sbjct: 319 --EGNDILIIDDYAHHPTEIEATISAARA-TGKRIIAVF 354


>gi|308070406|ref|YP_003872011.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
 gi|305859685|gb|ADM71473.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
          Length = 459

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 142/342 (41%), Gaps = 52/342 (15%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ IA GA+ +V S+A S  +          I  +  ++    L   R       
Sbjct: 55  GH--TPEHIA-GADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLARLLNER------- 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKA 173
             +AV G  GK++ +S +  + +R  +    I  G  + + + A+  +            
Sbjct: 105 KGIAVAGAHGKTTTSSMIALVMERCNVDPTYIIGGEITNLGTNAKAGK------------ 152

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFN 228
                S+ V   + E+    L  H   GI       TN+  DH+     D+++ + AY  
Sbjct: 153 -----SEFVVAEADESDGSFLQYHPWQGI------VTNIEADHLENYDGDFNRLKSAY-- 199

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             ++   ++ P +  AI+ ADD   +E++ +      RV++ G + +  ++     + ++
Sbjct: 200 --VQFLSQIRP-DGAAIVCADDQNIREMLPQLQ---TRVITYGVEHEADYMATDIQLGDR 253

Query: 289 Q-QVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   T+S +G     +   +PG+  +YNA+     C+  GI    +   + + H    RF
Sbjct: 254 RLSFTMSRKGTALGTIELSVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFHGAKRRF 313

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           + +G  S    I  DYAH    +E  +   R  T  RII VF
Sbjct: 314 QVLG-ESNDILIIDDYAHHPTEIEATISAARA-TGKRIIAVF 353


>gi|260437509|ref|ZP_05791325.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
 gi|292810142|gb|EFF69347.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
          Length = 458

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 139/346 (40%), Gaps = 56/346 (16%)

Query: 64  IAQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I+QG +  +   A ++ D      ++A I ++   L     +    +  + L G+   N 
Sbjct: 51  ISQGIKVFIGQKADNITDDIDLVVYTAAIHNDNEELAAARAKNIPVITRAELLGEIMTNY 110

Query: 118 ---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLA 171
              + V+GT GK++  S + +I     L      PT ++         N     S  ++ 
Sbjct: 111 KTAVGVSGTHGKTTTTSMLTEILVNGSLD-----PTVSVGGILPSIHGNLRIGHSDNFVT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y +S      ++E                      N+  DH+D+ +      N+  
Sbjct: 166 EACEYTNSFLSFFPTIEI-------------------ILNIEEDHLDFFKDINDIRNSFG 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKV-CA 284
           R +  LLP+    +I  D    +E+ K   NA C V++VG      Y    I   +  C 
Sbjct: 207 R-YVRLLPENGLLVINNDIDNVEEIYK---NAACPVITVGKTPDADYTADNISFDEFGCP 262

Query: 285 IHN--KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            ++  +Q  TI   G+       +PG   VYN+L A  + I +GID + +++ L+  H  
Sbjct: 263 SYDLIRQGNTI---GR---IALSVPGIHNVYNSLAAIAVAIHLGIDISTIIDSLKGFHGT 316

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             RF+  GT   G  I  DYAH    +   + +       +++++F
Sbjct: 317 DRRFQKKGT-VNGFTIIDDYAHHPAEINATINSAMNYPHKKLVIIF 361


>gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
 gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
          Length = 823

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 109/229 (47%), Gaps = 31/229 (13%)

Query: 28  RKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +KI++++ DSR +      +F+++VG K  G  FIP  I  G    +V    SL+     
Sbjct: 25  QKISQIAIDSRQVSNPEKTLFISLVGAKAKGQDFIPALIDLGVRNFIVHKGNSLK---RE 81

Query: 86  IRSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + +    ++VD+TRK L   A   R Y + P  ++++TG++GK+ V  ++ Q+  +    
Sbjct: 82  LLAKANFVLVDDTRKALQEIARYQRSYFEKP--VVSITGSNGKTIVKEWLGQVLSQ---- 135

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDG 201
           ++Q+      S  + ++++  P  ++   A   ++    G++     A+   + Q  L  
Sbjct: 136 AYQVAK----SPKSYNSQVGVPLSVFGIDAGHQVAILEAGISKTGEMAALERIIQPNL-- 189

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                G FTN+G  H +   +Q++    K+ LF     K S  ++Y  D
Sbjct: 190 -----GIFTNIGSAHKEGFSSQESKILEKLSLF-----KGSDFLVYCKD 228


>gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
 gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
          Length = 455

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 31/347 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+    VS+D+R I  G +FV + G + +GH ++  AI  GA+A +       Q   A +
Sbjct: 20  EQSFTAVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIKSGAQAALWEEG---QPVPAAL 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +  + VV +T   L   AS    K    ++ +TG++GK++    +  +    G +   
Sbjct: 77  PDDFQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNGKTTTKDILASLLSLEGETYKT 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205
            G          +N +  P  I     L+  S+     + +  S +G +  RL  I K  
Sbjct: 137 QG--------NYNNHIGLPLTI-----LAMPSTCKYLILEMGMSGYG-EIERLSEIAKPD 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  H++   ++     AKM + E L P      ++ D   S E +        
Sbjct: 183 LAIVTNIGESHMEQLGSRAGIAKAKMEIKEGLSP---AGFLFID---SDEPLLDGWKQSS 236

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            ++ VG+    I ++ V A  +  Q    +EG  F+    L G+  V NA     +    
Sbjct: 237 -IMRVGFNHADILVENVAATVDGYQ--FDIEGHHFE--LSLLGKHNVKNAAYCIAVARKF 291

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           G+ ++ +   L ++ +   R E +  N   G + V+ A+ ++   MI
Sbjct: 292 GLVTSKIQTGLRQISLTSMRLEKLTGNK--GELIVNDAYNASPTSMI 336


>gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli WV_060327]
 gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli RN587/1]
          Length = 452

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 138/333 (41%), Gaps = 41/333 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +   
Sbjct: 17  LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGAGALLVSRPLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            TP   Y    L      G  H    A +  L +      
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPE---- 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253
              A    NL   H++   +      AK  +F   LP+   AI+ AD+           S
Sbjct: 178 ---AALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++V + + NA     +  +    IH+       +  + T+       D L PLPG   + 
Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           NAL AA L +++G     +   L  L  VPGR 
Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317


>gi|134302664|ref|YP_001122633.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166224691|sp|A4J011|MURC_FRATW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134050441|gb|ABO47512.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 451

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 145/367 (39%), Gaps = 42/367 (11%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+TGT GK++ +S +  + CQ    SSF +G    +  +A  N                
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L    +I    TN+  DH+    T    +   +  F +
Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            + KES   IY   DD   ++++ + + +   V S G+     + +     I       I
Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      
Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            G ++ V  DY H    +   +  +R    + +II VF     R    R ++     AL 
Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378

Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           LAD  I+      S D + I+     +I+ G+ G++       AI    ++ N+  V+++
Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILI 436

Query: 465 AGKGHET 471
            G G  T
Sbjct: 437 QGAGDVT 443


>gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 484

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 21/219 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I  G IFVA  G + DGHLF P A+  GA  ++V     L      +      
Sbjct: 48  VDTDSRLIGPGGIFVAKPGEETDGHLFAPWAVEAGAALLLVERELDLPVPQVLVPD---- 103

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            VVD   +      +R+       ++AVTG++GK++  + +  I +  G +       S 
Sbjct: 104 -VVDALGRLAHEVVARVRALGELRMVAVTGSNGKTTTKNLLHAILETQGET------VSP 156

Query: 153 ISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           ++SF  +N +  P + + + ++  +L ++      + AS  G     +   K   G    
Sbjct: 157 VASF--NNEVGAPLTMLKVTRSTRFLVAE------MGASGLGEITRLIRMAKPDVGIVLT 208

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +G  H       +     K  + ++LLP+++ A++ ADD
Sbjct: 209 VGLAHAGGFGGIERTLVTKTEMVKDLLPEDT-AVLNADD 246


>gi|323497893|ref|ZP_08102902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
 gi|323316938|gb|EGA69940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
          Length = 441

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 130/306 (42%), Gaps = 59/306 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL   Q+G    I   A +  L  P+ +Y+ +  S+
Sbjct: 112 VIAITGSNGKSTVTDLAGVVAKAAGL---QVGVGGNIGVPALE-LLEQPADLYVLELSSF 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E +S          + L A +F NL  DH+D +   + Y  AK+R+FE 
Sbjct: 168 ---------QLETTS---------SLNLKAAAFLNLSEDHMDRYDGMEGYRQAKLRIFEH 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               ES  +   D A   E                ++G+ +      ++ +K Q ++ V+
Sbjct: 210 ---AESCIVNAQDKATYPE---------------HFKGELVEF----SLTDKTQFSVQVQ 247

Query: 297 GKDFDFL------------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            ++ ++L              L G   V NALV   L   +GID +  L  L+  + +  
Sbjct: 248 -QNREYLCQDNLPILATDELTLVGRHNVANALVVLALLDCVGIDVSQGLSALKSYNGLTH 306

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMG 403
           R + V  N  G +   D   T+ +  +   +  T+T    ++V G G   D  +  P++ 
Sbjct: 307 RCQIVADN-HGVKWVNDSKATNVASTLAALSGLTLTGKLYLLVGGVGKGADFSELAPVLA 365

Query: 404 KIALDL 409
           K+ + L
Sbjct: 366 KLNVQL 371


>gi|319778486|ref|YP_004129399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
 gi|317108510|gb|ADU91256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
          Length = 478

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 16/118 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT+GK++V S V+ +C+ +GL S + G  S             PS + +      
Sbjct: 123 IIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGNIS-------------PSALTVVCEFEE 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            +S     +S+E SS  L     D I L A +  N+ +DHID+H + +AY  +K ++F
Sbjct: 170 KNSWPDV-ISLELSSAQL--FYTDYICLDASTILNITQDHIDWHGSMEAYIASKKKIF 224


>gi|219670366|ref|YP_002460801.1| FolC bifunctional protein [Desulfitobacterium hafniense DCB-2]
 gi|219540626|gb|ACL22365.1| FolC bifunctional protein [Desulfitobacterium hafniense DCB-2]
          Length = 459

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 134/317 (42%), Gaps = 33/317 (10%)

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T   +  A AL Y + Q V  V +E    G +D   +  +K +    TN+G DH+DY  +
Sbjct: 143 TEFEVNTAMALMYFADQKVDLVLLEVGLGGAIDSTNV--VKPLISVITNVGMDHMDYLGE 200

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFI 277
           T +     K  + +          I    A   EV+    K+A      +  VG   ++ 
Sbjct: 201 TYEEIAGVKAGIIK-------AGAITVTAADRPEVLNVIRKKAQEMNSPLWVVGDDVRW- 252

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335
            ++    +  +  +   + G        L GE QV NA  A  +C  +  +  + LE   
Sbjct: 253 EIRWSGELEQEFDLA-GLRGAYNKLRLRLVGEHQVVNAATAVTVCELLKFEYGMNLERRN 311

Query: 336 -LEKLH--VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
             E L   V PGR E +    +   + +D AH  +    + K +      R+++  G  G
Sbjct: 312 IYEGLRKAVWPGRLELLSLKPK---VLIDGAHNVDGAHALAKALNIFQRQRLVLCLGMLG 368

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEII--HGIPGFIEKGNRIEAI 449
           D+++ K   +  I + LAD  I+T  N PRS + E +  E++   G P    +  R+ A+
Sbjct: 369 DKEREK---VVDILVPLADEVIITKPNSPRSGNWEYLH-ELVKEKGKPVLTIEEPRL-AV 423

Query: 450 RTAIEMLNKQDVLVVAG 466
             A   L+K+D+L V G
Sbjct: 424 EEAFRRLDKEDMLCVTG 440


>gi|302872762|ref|YP_003841398.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575621|gb|ADL43412.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 455

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/403 (20%), Positives = 167/403 (41%), Gaps = 58/403 (14%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W E    + S+ ++ ++   I V I    ++ HL        G E ++ ++A S +D   
Sbjct: 27  WVEGSDMQESTTTKMLKQNGINVYI--GHDESHL-------NGDETVIYTAAIS-KDNPE 76

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + +    L +    +FL L       K  +N++A++GT GK++  S +  I +++  + 
Sbjct: 77  LLAAKRMNLKIYERAEFLGLLM-----KDFKNVIAISGTHGKTTTTSMIGYILKKANYN- 130

Query: 145 FQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               PT  + +F +    N +       + +A  Y+ S    + ++              
Sbjct: 131 ----PTVLVGAFVKQLSGNFVIGSKEYLVVEACEYVDSFLKFNPTI-------------- 172

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                G   N+  DH+DY +   +  N+  + F + +      +   DD   K+++ + +
Sbjct: 173 -----GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKISTSGFLVANCDDKNVKDIISQLN 226

Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNAL 316
               +++ +  + K  I    +  I    +    V+ KD + L      +PG   VYNAL
Sbjct: 227 T---QIICISTKEKTDIFADNISCIDGYYE--FDVKNKDDETLAHIKLNIPGFHNVYNAL 281

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G++S  +   + +      R E VG    G  +Y DYAH    ++  L  +
Sbjct: 282 AAFAVASKLGVESITIEHAISEFCGASRRLEKVG-EFDGIYLYDDYAHHPTEIKASLNTL 340

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
           + ++ G++  +F          + ++ + A  L LAD  IVTD
Sbjct: 341 KKLSQGKVFAIF--QPHTFSRLKNLLNEFAESLSLADKVIVTD 381


>gi|226323567|ref|ZP_03799085.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
 gi|225208251|gb|EEG90605.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
          Length = 470

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 126/312 (40%), Gaps = 37/312 (11%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++F+   R N P+L   +  + L    +    K P   +A++GT GK++  S +  I   
Sbjct: 95  EEFAEAKRRNLPML---SRAELLGQLMTNY--KTP---VAISGTHGKTTTTSMLSHIALA 146

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           + L    I     + +   + R+  P  +++ +A  Y +S    H S +           
Sbjct: 147 ANLDP-TISVGGILKAIEGNIRVGGPD-LFITEACEYTNS--FLHFSPKI---------- 192

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                  G   N+  DH+D+ +      N+   LF +LLP+    +I  D    +E+   
Sbjct: 193 -------GIILNVDADHLDFFKDLDDIRNS-FHLFAKLLPENGTLVINGDIDKIEEITS- 243

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFL-FPLPGEFQVYNAL 316
             +  CRV++ G +    +       + +   +  V  +G++   L   + GE  VYNAL
Sbjct: 244 --DLSCRVITFGKEASLDYSAANITYNEQGNASFDVVKDGQNVAHLALAVGGEHNVYNAL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+ +  +   L   H    RFE+ G    G  I  DYAH    +   LK+ 
Sbjct: 302 AAIAVADILGVPAETIQTGLASFHGTDRRFEYKG-EVGGVTIIDDYAHHPTEIAATLKSA 360

Query: 377 RTITSGRIIVVF 388
                 ++  +F
Sbjct: 361 AHYPHKKLWCIF 372


>gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 466

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 8/106 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +Q G +FVA+ G   D H F+PQA AQGA A +    + L++      +  P 
Sbjct: 27  VHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQGAVAAIAQ--HGLRE------AGLPG 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           L V +TR  L   A+    +    ++AVTG++GK++V   +  I +
Sbjct: 79  LEVADTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVTQMIAAILR 124


>gi|288939890|ref|YP_003442130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
 gi|288895262|gb|ADC61098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
          Length = 452

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 136/324 (41%), Gaps = 33/324 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + V +DSR    G +FVA+ G + DGH ++  A A GA A +V     L         +
Sbjct: 22  FSSVGTDSRADCTGQLFVALRGERFDGHEYVAAAQAAGAVAAMVDQPLPL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P  VVD+TR  L   A+    + P  ++A+TG++GK++V   V  I  ++G      G 
Sbjct: 73  LPQWVVDDTRLGLGRLAAAWRDRFPGRVIAITGSNGKTTVKEMVAAILSQAGRVRATRGN 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +N +  P  +  A+   +L       + + A+ HG   +  +  +      
Sbjct: 133 L--------NNDIGMPLTLLSARDEDFLV------LEMGANHHGEIGYMTEIARPEVALI 178

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN GR H++   + +    AK  +    LP++   ++  D  Y    + R    G R+L+
Sbjct: 179 TNAGRAHLEGFGSVEGVARAKGEIARG-LPEDGVFVVSGDSPYLG--LWRELAEGRRMLT 235

Query: 270 VGYQGKFIHLK-------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               G             +  A   +   T  V  +++     L G+  V NAL A+   
Sbjct: 236 FALDGAADLTAGTESIGVEWGAAGFRTTFTARVADENWPLALSLAGQHNVRNALAASAGA 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRF 346
           +A+G+D A +   LE L  V GR 
Sbjct: 296 LALGLDRAAIAAGLESLTPVKGRL 319


>gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
 gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
          Length = 467

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 157/378 (41%), Gaps = 61/378 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FVA+ G + DGH FI  A++QG    +   +++  +     +    +
Sbjct: 26  VSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQGITVFLAEESWA--ERHELPKGAGAV 83

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LV D  R    L A   Y +   N+  + VTG++GK++    + +I         Q GP 
Sbjct: 84  LVPDTLRALGDLAA---YHRRRFNLKTVCVTGSNGKTTTKEMLARILA-------QTGP- 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206
              +    +N +  P  I+    L+      V  + +  S  G     +D +  IA    
Sbjct: 133 GLKTEGNLNNLIGLPLTIF---RLTGRERWAVFEIGM--SEFG----EIDRLAEIAEPQV 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---------- 256
           G  TN    H++   + +    AK  LF  L P  S A+   DD                
Sbjct: 184 GIITNAFPAHLETLGSVEGVARAKGELFLRLKPG-SVAVYNVDDPLVSACPTHLNVTRLT 242

Query: 257 --MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             ++ A  +   + S+G +G+   L+       +QQVT+S  G+             +YN
Sbjct: 243 FGLRGAEVSSASIQSLGKRGESFTLR---LPDGEQQVTLSAYGR-----------HNIYN 288

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMI 372
           AL AA    A+G+   ++ + LE+      RF+        G   +D ++ +N  S+   
Sbjct: 289 ALAAAAAAHALGVSGEVIRQGLEEFSPYDKRFQL---EEVAGVTLIDDSYNANPASMAAA 345

Query: 373 LKNIRTITS-GRIIVVFG 389
           L  ++ +   GR++ V G
Sbjct: 346 LTTLKELQGEGRLVAVLG 363


>gi|167041008|ref|YP_001663993.1| cyanophycin synthetase [Thermoanaerobacter sp. X514]
 gi|300913781|ref|ZP_07131098.1| cyanophycin synthetase [Thermoanaerobacter sp. X561]
 gi|307725533|ref|YP_003905284.1| cyanophycin synthetase [Thermoanaerobacter sp. X513]
 gi|166855248|gb|ABY93657.1| cyanophycin synthetase [Thermoanaerobacter sp. X514]
 gi|300890466|gb|EFK85611.1| cyanophycin synthetase [Thermoanaerobacter sp. X561]
 gi|307582594|gb|ADN55993.1| cyanophycin synthetase [Thermoanaerobacter sp. X513]
          Length = 876

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 38/376 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK++V      I +  G   + +G T T   +  D  +          A + 
Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID  +T +  A+  A   
Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288
           L  E + ++  +++ ADD  +  + +RA   G  +    Y        H++K   A++ K
Sbjct: 594 LVVEAVKEDGYSVLNADDPMTPYLAQRAK--GKIIYFSMYDNNLTVKKHIEKGGIAVYVK 651

Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             V +   G      K  +    L G+  + V NAL A      + +   ++ + ++  +
Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFY 711

Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 PGRF     N    R+ VDY H    ++ +++  + + + R+I V G  GDR  
Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRIN 769

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKG------NRIEA 448
                +G+I     D   + +D + R   P ++   +  G I G I++          EA
Sbjct: 770 SSILKVGEICGQGFDFIYIKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEA 829

Query: 449 IRTAIEMLNKQDVLVV 464
           +R A+      D++VV
Sbjct: 830 LRAAMYNAEAGDLIVV 845


>gi|262283025|ref|ZP_06060792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261277|gb|EEY79976.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 456

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 167/399 (41%), Gaps = 65/399 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I++G +FV + G + DGH FI  A AQGA A +          S    +  P ++V
Sbjct: 32  DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATL----------SERPVAEAPYILV 80

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSSFQIG 148
           D+  K     A     K   ++LAVTG++GK++    + Q+   S       G  + +IG
Sbjct: 81  DDVLKAFQCLAKYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIG 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
              T+    +D                 +   G  H+         D H L  + K   G
Sbjct: 141 LPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DIHLLSELAKPKTG 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +G  H+++  ++      KM++ +  L K+   I+ AD     +++     A C++
Sbjct: 180 IVTLVGEAHLEFFGSRAEIAQGKMQIADG-LRKDGLLIVPAD-----KIVNEFLPADCKL 233

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLC 322
           +  G     I L ++     +++ ++S E    +FL      P+ G++   NA++AA   
Sbjct: 234 VRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLPVTGKYNATNAMIAAYAA 285

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           +  G+    + +   KL +   R E+    + G  I  D Y     ++ +IL+   TI +
Sbjct: 286 LQEGVSETAIAQAFSKLELTRNRTEWKKA-ANGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              GR + V     +     + + G +   L +  IVTD
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382


>gi|134298544|ref|YP_001112040.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
 gi|189029171|sp|A4J2B2|MURC_DESRM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134051244|gb|ABO49215.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 8/182 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+DY+ T++    A  R F   L  E  A+I  DD   KE+        C+V++
Sbjct: 183 TNIEDDHLDYYGTRENIAKA-FRQFLAKLSAEGLAVICLDDPVLKEITT---GLTCQVVT 238

Query: 270 VGYQGKFIHLK-KVCAIHNK-QQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIG 326
            G  G     + KV    N   Q  +  + +    L   +PG   + NA+ A  +   + 
Sbjct: 239 YGSLGSGADYQIKVLETRNGVNQGEVYFQEERLGMLELHVPGYHNLLNAMAAVAIGRHLN 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D   +   L K      RF+ +G    G  +  DYAH    ++  L+  RT   GRI+ 
Sbjct: 299 LDFEKIARALRKFTGAKRRFQVIG-KVNGITVVDDYAHHPTEVKATLQAARTSHPGRIVT 357

Query: 387 VF 388
           +F
Sbjct: 358 IF 359


>gi|255325343|ref|ZP_05366449.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297908|gb|EET77219.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
          Length = 487

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 170/422 (40%), Gaps = 60/422 (14%)

Query: 84  ATIRSNTPILVV--DNTRKFL---SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           A I  + P LV   DN    +    L A+ + G H + +LA  GT GK+S  S      Q
Sbjct: 81  AAIPQDNPELVAAKDNDIPVIRRSDLLAALMEG-HKQVLLA--GTHGKTSTTSMTVSAMQ 137

Query: 139 RSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +GL  SF IG         Q NR  T             ++ G T  +  A +   D  
Sbjct: 138 HAGLDPSFAIG--------GQLNRAGT-------------NAHGGTGEAFVAEADESDAS 176

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            L     +A   T +  DH+D+  +++AYF       + + P+    ++ A+D ++    
Sbjct: 177 LLRYSPDVA-VLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVVCAEDEHAARAG 235

Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG-------E 309
           +RA   G  V++ G   K F     + A   +++ T   EG D      LPG       E
Sbjct: 236 ERALERGINVVAYGSAEKSFTSTVPLAAELVREETT--AEGMDTTVKLDLPGVSETVRYE 293

Query: 310 FQ------VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYV 360
            Q      V N++ A    +  G   A + E L     V  RFE+ G+  + G   R++ 
Sbjct: 294 LQIPGHHMVLNSMGALIAGVLSGGAPAAIAEGLADFSGVRRRFEYRGSVDKQGKPVRVFD 353

Query: 361 DYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           DYAH    +  +L+  R         GR+I  F         +       AL LAD A+V
Sbjct: 354 DYAHHPTEVAAVLRAARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQALSLADAAVV 413

Query: 416 TDDNPRSEDP-EKIRAEII-HGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            D     E P E I + II   +P  ++   + +   A R  + ++   DV++  G G  
Sbjct: 414 LDIYGAREQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGDVVLTIGAGSV 473

Query: 471 TV 472
           T+
Sbjct: 474 TM 475


>gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis B2/94]
 gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M644/93/1]
 gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M13/05/1]
 gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M490/95/1]
 gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti B1/94]
 gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           sp. F5/99]
 gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
 gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
          Length = 481

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLSHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
          Length = 478

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 145/372 (38%), Gaps = 35/372 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S DSR I  G  + AI G+  DGH F+  A+  G    V++     Q   A    +
Sbjct: 27  INGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGLAVIA-----QSQRAKFSGD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVV +    L   A     +    I+AVTG+ GK+S    ++ + Q  G        
Sbjct: 82  LPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTSTKEALRTVLQAQG-------- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGIKLI--- 205
            + +S+ + +N      P+ LA+       Q       E   +H  +   L  +KL+   
Sbjct: 134 ATHVSAASFNNHWGV--PLSLAR-----CPQDAKFAVFEIGMNHAGEIEPL--VKLVRPH 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG- 264
               T +   H+++    +A  +AK  +F  L P  + AI+  D++    + +RA   G 
Sbjct: 185 VAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGA-AILNRDNSQFARLAERAKACGV 243

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            R+++ G            A+H +   V   V   D  +   + G     N+L       
Sbjct: 244 ARIVTFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLAAST 303

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM-----ILKNIR 377
            +G D AL    L       GR         GG    +D ++ +N   M     +L  + 
Sbjct: 304 LVGGDLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLGRVA 363

Query: 378 TITSGRIIVVFG 389
               GR I V G
Sbjct: 364 IGPQGRRIAVLG 375


>gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
 gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
          Length = 463

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V  DSR ++ G +F  I G   DGH F+ QA   GA A+VVS    + +F      
Sbjct: 25  EIAAVRIDSRLVKKGDVFFCIEGENFDGHNFVQQAFDAGAVAVVVSQF--MPEF-----E 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           + P ++V +T + L   A+    K    ++AVTG++GK++V   +  +   SG
Sbjct: 78  DKPTIMVKDTVQALGRVAAYWRMKSHARMIAVTGSAGKTTVKEMLAHVLSGSG 130


>gi|332299375|ref|YP_004441296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176438|gb|AEE12128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 461

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 148/366 (40%), Gaps = 43/366 (11%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA R  G     ++A+TG++GK++  +++      +GL     G   T  S A+   L  
Sbjct: 97  FAYRYAGD--SVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGT--SLARQVALA- 151

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQ 223
           P   Y+                +E SS  LD   +   +       N+  DH+D Y    
Sbjct: 152 PHAYYV----------------IELSSFQLDH--MYQFRAHIAILLNITPDHLDRYDHQM 193

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKV 282
           + Y  AKMR+ +   P +   I + +D +++ ++K     AG R+    +  K      V
Sbjct: 194 ELYARAKMRITQNQEPTDY-FISWIEDDWTQRLLKEPGMGAGRRIF---FSTKASSDDAV 249

Query: 283 CAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A  +  Q+  +++   F+ L     L G+  V NAL       A+G+   ++   LE  
Sbjct: 250 VASSHNGQLRFALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETF 309

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VP R E++ +      I    A   NS    L+++R  T    I++ G G D+     
Sbjct: 310 TNVPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPT----ILILG-GTDKGNDYN 364

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +M  +   +  +  +T D+       K+       IP   E  +  +AI  A +M    
Sbjct: 365 DLMELVKEKVVGLIYLTTDSA------KLHRSFDSVIPRHEEVTSMRDAIAAARQMATAG 418

Query: 460 DVLVVA 465
           D ++++
Sbjct: 419 DTVLLS 424


>gi|330895234|gb|EGH27572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 128

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99
           ++ G +F+A+ G   DG   I  A+ +GA A+    AY ++       ++ P++ V    
Sbjct: 1   MRPGDLFLAVPGINVDGRAHIADALKRGAAAV----AYEVEGSIVLPITDVPLIPVKGLA 56

Query: 100 KFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSF 156
             LS  A R YG      N++ VTGT+GK+SV   V Q     G     +G   T     
Sbjct: 57  AQLSAIAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVGTLGTGFYGS 116

Query: 157 AQDNRLTTPSPI 168
            Q  R TTP PI
Sbjct: 117 LQSGRHTTPDPI 128


>gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
 gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
          Length = 826

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 156/366 (42%), Gaps = 30/366 (8%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +E  I+ V +DSR +      +F A+   + DGH +IP+   +G    VV +    +D++
Sbjct: 20  KEANISFVLTDSRSLCFPEETLFFALKSERNDGHNYIPELYGRGVRNFVVETV--PEDWN 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                ++  L V  + + L   A R   ++   I+ +TG++GK+ V  ++ Q      L 
Sbjct: 78  RRY-PDSNFLKVVGSLEALQRLAERHRDEYLVPIVGITGSNGKTMVKEWLYQ------LL 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           S Q+  T +  S+  ++++  P  + L   L+  +  GV    +         H  D I+
Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVLL---LNENTQVGVFEAGISQPGEMSALH--DIIQ 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHN 262
              G FT LG  H +   +  A    K+ LF      ++ AI+Y+ DD      +     
Sbjct: 184 PTIGVFTCLGSAHQENFPSLDAKCREKLHLFH-----DTQAIVYSLDDEVLNRCLDEYDY 238

Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAG 320
            G ++  S   +    ++K +     +  VT + + GK+  +  P   +  V N++  A 
Sbjct: 239 KGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVVNSITCAV 298

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIR 377
             + +G+  A + E +  L  V  R E V     G  +  D Y    NSL++ L   N R
Sbjct: 299 TALQLGVTPAALGERMALLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIALDFMNRR 357

Query: 378 TITSGR 383
               GR
Sbjct: 358 PDHKGR 363


>gi|24214164|ref|NP_711645.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24195061|gb|AAN48663.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 466

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 25/292 (8%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +FV ++GN+ DGH FI  AI++GA   +V   + +   +  +   +  + V NT   L  
Sbjct: 45  LFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYK-NLNLEEKSKAIPVKNTLTALGK 102

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            AS    +    ++AVTG+SGK++    +    +    S+        ++    +N +  
Sbjct: 103 LASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESAL------VVTEKNYNNEIGL 156

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQ 223
           P  ++       +S Q    V     +H  +  RL  I K      T +G  HI++ ++Q
Sbjct: 157 PFTLF------KISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQ 210

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           +    AK  + E L  K+   + Y +   YSK +  +    G +++            K+
Sbjct: 211 KNIAKAKGEIVEGL--KKGGKLFYPNTGEYSKILKNKTRKHGNKLV-------LTKSDKI 261

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +I  K+     +E K+    + LPGE  + N  VA     AIG     + E
Sbjct: 262 FSILQKKSSGFLLEYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQE 313


>gi|302383885|ref|YP_003819708.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194513|gb|ADL02085.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 492

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 32/160 (20%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP--IYLAKA 173
            ++A+TGT+GKS+  + +  + +++GL+   IG    I   A    L+ P+P  +Y+ + 
Sbjct: 117 KVVAITGTNGKSTTTALIGWVLKQAGLT-VHIGGNIGIGVLA----LSAPTPDAVYVVEV 171

Query: 174 LSY---LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            SY   L++     V++                      TN+  DH+D H   + Y  AK
Sbjct: 172 SSYQLDLTTSFAPDVAI---------------------LTNISPDHLDRHGGMEGYVAAK 210

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            RLF+ + P E  A+I  DD +  + +   ++ G R+ ++
Sbjct: 211 ARLFQVMSP-EKVALIGVDDDWGWKTVNALNDRGLRLSTI 249


>gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
 gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
          Length = 445

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 132/319 (41%), Gaps = 41/319 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  + +DSR +Q G +FVA+ G + DGH FIPQA+++GA A++                 
Sbjct: 26  VQALCTDSRRLQPGSVFVALRGERFDGHDFIPQALSKGAVAVISQRPV-----------E 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P   V +T       A     +    ++A+TG++GK++    +     R G        
Sbjct: 75  GPHFQVPDTLTAYQRIARAWREQFSIPVVAITGSAGKTTTKEMLAAALSRYG-------- 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAG 207
            S + S A  N     + I +A+ L  L  +    V +E +  G  +  RL  + +    
Sbjct: 127 -SVLKSEANHN-----NDIGVAQTLLRLQPEHQFAV-LEMAMRGPGEIRRLAQMARPTHA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++G  HI    +++A   AK  L +EL   +  A++  +D     +   A     + 
Sbjct: 180 LITHIGTAHIGRLGSREAIAAAKCELLQEL--GQGIAVLNGEDPLL--LATAASLWSGKT 235

Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L+ G  QG            + Q  T++VEG       PLPG     N +       ++G
Sbjct: 236 LTYGLAQGDL------RGEWDPQAQTVTVEG--LTLPVPLPGRHHALNWMGVLAAVRSLG 287

Query: 327 IDSALVLEHLEKLHVVPGR 345
           ++   + E L+    + GR
Sbjct: 288 LNWERLQEPLDLPLPLEGR 306


>gi|313893638|ref|ZP_07827206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313441782|gb|EFR60206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 460

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 131/335 (39%), Gaps = 54/335 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
            G +A+V S+A         IR + P +V    +    L  S +        + +AV G 
Sbjct: 63  NGVDAVVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTDGIAVAGA 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S  S + QI     L      PT  I               YL K  S L     +
Sbjct: 114 HGKTSTTSMIGQI-----LVEADADPTVIIGGEVD----------YL-KGSSCLGKGHFS 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V  + S     + R   I +     TN+  DH+D+++T     NA    F E LP+   
Sbjct: 158 VVEADESDGSFLKLRPHTIVI-----TNIEDDHMDHYKTMDNLLNAFCE-FVETLPENGK 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEG 297
           AI+  D+   + VM R        ++ G      Y  K IH      +++     I++E 
Sbjct: 212 AIVCGDNESIRYVMNRVKR---NFITYGLDDSNDYVAKNIHYVDSTLVYDIYHKGINIE- 267

Query: 298 KDFDFLFPLPGEFQVYNAL----VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   +PG+  V N+L    VA   C   G+++ ++ + L K      RFE  G + 
Sbjct: 268 ---RVRLRVPGDHNVLNSLAAFIVAHDCC---GVEARVITKGLGKFIGAKRRFETKG-HV 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            G  +  DYAH    ++  LK  + +   R+I VF
Sbjct: 321 AGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVF 355


>gi|311895540|dbj|BAJ27948.1| putative UDP-N-acetylmuramoylalanine--D- glutamate ligase
           [Kitasatospora setae KM-6054]
          Length = 480

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 31/180 (17%)

Query: 105 FASRLYGKHPEN-----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
            A RL   HP        LAVTGT+GK++    +  I   +G  +  +G           
Sbjct: 107 LAWRLRAPHPATGEPAPWLAVTGTNGKTTTVQMLASILTAAGKRTAAVGNVGV------- 159

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                  P+  A     L+ +    ++VE SS+ L  H    +++ +G+  NL  DH+D+
Sbjct: 160 -------PVLDA----VLAEEPYDVLAVELSSYQL--HWAPSLRVHSGAVLNLAPDHLDW 206

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           H + +AY  AK R++E        A +Y  AD A    V +     GCR +  G     +
Sbjct: 207 HGSMEAYAAAKGRIYE----GNQVACVYNLADPATEALVREADVEEGCRAVGFGLDAPSV 262


>gi|167038658|ref|YP_001666236.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320117050|ref|YP_004187209.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857492|gb|ABY95900.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319930141|gb|ADV80826.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 876

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 38/376 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK++V      I +  G   + +G T T   +  D  +          A + 
Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID  +T +  A+  A   
Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288
           L  E + ++  +++ ADD  +  + +RA   G  +    Y        H++K   A++ K
Sbjct: 594 LVVEAVKEDGYSVLNADDPMTTYLAQRAK--GKIIYFSMYDNNLTVKKHIEKGGIAVYVK 651

Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             V +   G      K  +    L G+  + V NAL A      + +   ++ + ++  +
Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFY 711

Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 PGRF     N    R+ VDY H    ++ +++  + + + R+I V G  GDR  
Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRIN 769

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKG------NRIEA 448
                +G+I     D   + +D + R   P ++   +  G I G I++          EA
Sbjct: 770 SSILKVGEICGQGFDFIYIKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEA 829

Query: 449 IRTAIEMLNKQDVLVV 464
           +R A+      D++VV
Sbjct: 830 LRAAMYNAEAGDLIVV 845


>gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
 gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
          Length = 454

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 152/370 (41%), Gaps = 53/370 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +  I+ +  DSR I +G +F+ + G + DGH FIP A   GA A           FS
Sbjct: 20  QFEDSPIHSIEFDSRKIASGDLFLPLKGTR-DGHEFIPTAFENGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                + P ++V +        A     K   +++AVTG++GK++    +  +      +
Sbjct: 69  RIELDDVPYILVKDPLAAFQTLAKYYLEKMAVDVIAVTGSNGKTTTKDMIHDVLA----T 124

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV--SVEASSHGLDQHRLDG 201
           +++I  T        +N +  P                V H+  S +     + Q  L  
Sbjct: 125 TYKIYKTQG----NYNNEIGLPYT--------------VLHMPDSTQKLVLEMGQDHLGD 166

Query: 202 IKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           I L++       G  T +G  H+++  +++     KM++    + K+   I+ AD     
Sbjct: 167 IDLLSKIAQPKIGIVTLIGEAHLEFFGSREKIAQGKMQIANG-MAKDGTLIVPAD----- 220

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +++        +V+  G   + I L ++  +  K  ++ +V   D     P+ G++   N
Sbjct: 221 KIINDYLPDNQKVVRFG-PDQDIFLTEL--VERKDSLSFAVNFMDGLIELPVTGKYNATN 277

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           A++A  +    G+    +   L+ L +   R E+    S G  I  D Y     ++++IL
Sbjct: 278 AMLATYVGQLEGVADEAIRSALKNLVLTKNRTEWKKA-SNGADILADVYNANPTAMKLIL 336

Query: 374 KNIRTITSGR 383
           +   T+ +  
Sbjct: 337 ETFLTLPANE 346


>gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 498

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 146/351 (41%), Gaps = 67/351 (19%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-FSATIRSNTPILV 94
           DSR +  G +F A+ G K DGH F+P A+A GA   VV     + D ++A +R    ++V
Sbjct: 32  DSRKVAPGDVFFALPGEKVDGHDFVPAALAAGAACAVV---RRIDDGWTAALRPGQGLIV 88

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V++  + L   A     +    ++AVTG++GK+S    +          +  +G      
Sbjct: 89  VNDGLQALQDCARHYRTQLAIPVIAVTGSTGKTSTKDLL----------AAAVG------ 132

Query: 155 SFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206
             AQ + + +P    + I L   L  +  Q    + VE    G  Q  +  +  IA    
Sbjct: 133 --AQRDVMKSPGNFNNEIGLPLTLLGVQEQHQALI-VEMGMRGKGQ--IAALCRIARPDV 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  H++   + +A   AK  L + L  K   A++  +D   ++V+    ++ C 
Sbjct: 188 GLLTNIGPVHMELLGSMEAIARAKGELLQSLSDK-GKAVVNGED---RQVVAETLSSRCP 243

Query: 267 VLSVGYQ----------GKFIHLKKVCAIHNKQQVTISVEG------------------- 297
           V+  G            G       V AI   +   +  +G                   
Sbjct: 244 VVYAGTSPEALAHGLIAGGLNPAAPVQAIWATEVEPLGEQGSRVAGALGVFIPEQAAGYE 303

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              F+FL PLPG  QV NAL+A     A+G+D A+    L +  +   R+E
Sbjct: 304 ESTFEFLLPLPGRHQVSNALLALAAAKAVGVDPAVAAGGLAQARLSSLRWE 354


>gi|20808924|ref|NP_624095.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|23821878|sp|Q8R749|MURC_THETN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|20517585|gb|AAM25699.1| UDP-N-acetylmuramate-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 460

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 108/300 (36%), Gaps = 81/300 (27%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           +AV G+ GK++  S +  I  R+G       PT      I +   + R+   S  ++ +A
Sbjct: 112 VAVAGSHGKTTTTSLISVILDRAGYD-----PTVLVGGEIDAIGGNVRVG-KSEYFVTEA 165

Query: 174 LSYLSS--QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             Y  S  +   +++V                       N+  DH+DY +          
Sbjct: 166 CEYTDSFLKFYPYIAV---------------------ILNVDSDHLDYFKNIDN-IKQSF 203

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMK----------------------RAHNAGCRVLS 269
           R F  L+P +   +   DDA +  V+K                           GC   +
Sbjct: 204 RQFASLVPSDGFVVACKDDANTMHVIKGLEKNIVTYGINEKSDWQAKDITYDEKGCASFN 263

Query: 270 VGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           V Y+GKFI H K                         +PG+  +YNAL +  +   +G+D
Sbjct: 264 VYYRGKFIGHFK-----------------------LSIPGKHNIYNALASLAVTYLLGVD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +    E++++      RFE  G    G  +  DYAH    +   L+  +     RII +F
Sbjct: 301 TEKAKEYIKEFKGTHRRFEVKGV-VEGVTVVDDYAHHPAEIHATLEAAKNYPHKRIIAIF 359


>gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
 gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
          Length = 451

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 31/249 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     VS DSR    G +FVA+  +  DGH F+P A A+GA  ++V+     +D  A  
Sbjct: 22  EADATGVSIDSRTTAPGELFVALA-DARDGHDFVPDAEAKGAACVLVA-----RDVGA-- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L+V++ +  L+        +    ++AVTG+ GKS+    +++I     LS+F 
Sbjct: 74  ---GPALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRI-----LSAF- 124

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
            G T +  +SF  +N +    P+ LA+ L   +   V  + +   +H  +   L  I + 
Sbjct: 125 -GATHAAEASF--NNHIGV--PLTLAR-LPAEADFAVVEIGM---NHPGEIAPLSAITRP 175

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  T +G  H+    + +A  + K  L   ++P    A +     +   + +RA + G
Sbjct: 176 HVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVP--GGAAVLPRGPFLSRLARRARD-G 232

Query: 265 CRVLSVGYQ 273
            RV+S G Q
Sbjct: 233 VRVVSFGAQ 241


>gi|182624328|ref|ZP_02952113.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
 gi|177910546|gb|EDT72919.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
          Length = 457

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 54  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +   + K   T 
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   +I+ VF
Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360


>gi|168205753|ref|ZP_02631758.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|168217610|ref|ZP_02643235.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
 gi|189029222|sp|Q0TMG0|MURC_CLOP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170662717|gb|EDT15400.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|182380340|gb|EDT77819.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
          Length = 457

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 54  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +   + K   T 
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   +I+ VF
Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360


>gi|254368603|ref|ZP_04984619.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157121506|gb|EDO65697.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 451

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 144/367 (39%), Gaps = 42/367 (11%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA+TGT GK++ +S +  + CQ    SSF +G    +  +A  N                
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L    +I    TN+  DH+    T    +   +  F +
Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            + KES   IY   DD   ++++ + + +   V S G+     + +     I       I
Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      
Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIITCLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            G ++ V  DY H    +   +  +R    + +II VF     R    R ++     AL 
Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378

Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           LAD  I+      S D + I+     +I+ G+ G++        I    ++ N+  V+++
Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHVIYFLEKLANENTVILI 436

Query: 465 AGKGHET 471
            G G  T
Sbjct: 437 QGAGDVT 443


>gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
 gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
          Length = 481

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
          Length = 818

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 150/369 (40%), Gaps = 36/369 (9%)

Query: 23  MQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +Q+ E +I  +  DSR I      +F AI G   DGH F+  A   G  + VV+    L 
Sbjct: 18  LQFYEAQIEHLLLDSRQIIFAERSLFFAIKGTHHDGHQFLSAAYQAGVRSFVVTKVPELS 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            F          L+V+N  + L   A+    + P  ++ +TG++GK++V  ++ Q+    
Sbjct: 78  QF-----PEANFLLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKTTVKEWLFQL---- 128

Query: 141 GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                 + P   I  S  + ++++  P  ++  +A   L   G+    +  S  G   + 
Sbjct: 129 ------LYPHYAIIRSPRSFNSQIGVPLSVWGIQAQHEL---GIFEAGI--SRKGEMGNL 177

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257
            + I+   G FT LG  H +   ++      K+ LF E+       +IY  DDA     +
Sbjct: 178 ANIIQAKIGIFTMLGEAHNEGFSSKAEKLREKLLLFAEV-----DLLIYRRDDATVHRAI 232

Query: 258 KRAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           K   + G + L+     +    +++ K     N   +    +  +     P      + N
Sbjct: 233 K---DLGRKTLAWSLDQHPNADLYVFKTETFLNHTHLEGRYQSSEQRIALPFTDHASIEN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+    + + +G+ S  + E + +L  V  R E +   +    I   Y    +SL + L+
Sbjct: 290 AIHCWAVLLHLGLKSEEIAERMAQLEPVAMRMELLDGRNNCLIINDTYNADLSSLRLGLQ 349

Query: 375 NIRTITSGR 383
            +R    GR
Sbjct: 350 WMRQHEHGR 358


>gi|303246308|ref|ZP_07332588.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
 gi|302492371|gb|EFL52243.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
          Length = 470

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 125/314 (39%), Gaps = 32/314 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N +AV GT GK++  S +  I   +G     I     ++++    RL             
Sbjct: 119 NGIAVAGTHGKTTTTSLLATIFTEAGYDPTVI-IGGRLNAYGAGARL------------- 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               QG   ++    S G        +  IA   TN+  DH+D++    A  +A +  F 
Sbjct: 165 ---GQGEYLIAEADESDG----SFLCLSPIASVVTNVDADHLDHYADLAAIDDAFVD-FL 216

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P     ++  DD     ++ R +     +L+ G   +     K+       + ++++
Sbjct: 217 NGIPFYGVNVVCLDDPGVARLLPRVNRP---ILTYGVTSQARLRGKILETGAASRFSVTL 273

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +GKD  +     PG   V NAL A GL +  GI+  ++   L K   V  RFE  G   R
Sbjct: 274 DGKDLGEMRLAHPGRHNVLNALGAIGLSLEAGIELPVIAAALAKFGGVGRRFERKG--ER 331

Query: 355 GGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLAD 411
            G + V DY H    +   L   RT+   R +VV      R    + + G      + AD
Sbjct: 332 NGVVVVDDYGHHPAEIRATLATARTVYPDRRLVV-AFQPHRFSRTKALFGDFCTCFEAAD 390

Query: 412 IAIVTDDNPRSEDP 425
             ++T+  P SE P
Sbjct: 391 ELLLTEIYPASEAP 404


>gi|149914522|ref|ZP_01903052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811315|gb|EDM71150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
          Length = 479

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 57/332 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R ++ G +FVA+   + DGH F+ QA+ +GA A +VS      D +       P+
Sbjct: 26  VSIDTRTLRPGDLFVALSAAR-DGHDFVAQALDKGAAAALVSHVPPGVDAA-----RAPL 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-------SF 145
           L+VD+ +  L         +    ++A+TG+ GK+S    ++ +    G +       + 
Sbjct: 80  LIVDDVQTALEAMGRAARARTQARVVAITGSVGKTSTKEMLRDVLSSHGRTHAAEASYNN 139

Query: 146 QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G   T++    D +       +  P  I      + LS     HV++           
Sbjct: 140 HWGVPLTLARMPADTQFAVIEIGMNHPGEI------APLSRMARPHVAM----------- 182

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVM 257
                      T +   H+   ++ +     K  +FE L  +E  A +Y  D A S  + 
Sbjct: 183 ----------VTTVAPAHLAAFESLEGIAREKASIFEGL--EEGGAAVYNGDLAVSPILA 230

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVY 313
             A      +LS G      H  +V  I  K   T++ EG+ +     F   +PG     
Sbjct: 231 DTAARHAAHLLSFGESPAMHH--RVTRITLKNACTVA-EGRAWRSPVLFKIMVPGRHFAV 287

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           NA+    +  A G+D A V+  L +     GR
Sbjct: 288 NAMGVLAVTHARGLDRAKVVTSLGQWQPGSGR 319


>gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
 gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
          Length = 471

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 32/232 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR +++G +FVA  G + DGH F    +  GA A++ S    +           P 
Sbjct: 31  VVRDSREVESGSLFVAFAGERVDGHDFAAAVVEAGAVAVLASRPVGV-----------PA 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+ +  L   A  +  +    ++A+TG++GK+S    + Q+ +    + F  G    
Sbjct: 80  IVVDDVQTALGALARHVVERLGATLVALTGSAGKTSTKDLIAQVLRSKAPTVFTPG---- 135

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR--LDGIKLIAGSF 209
               + +N +  P        L+ LS+   T   V E  + G+   R   D      G  
Sbjct: 136 ----SLNNEIGLP--------LTALSATEETKFLVLEMGARGIGHIRYLADLTPPKVGLV 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKR 259
            N+G  HI     ++    AK  L E L P E    AI+ ADD   + +  R
Sbjct: 184 LNVGTAHIGEFGGREQIAQAKGELVEGLPPAEDGGAAILNADDPLVRAMASR 235


>gi|331268329|ref|YP_004394821.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
 gi|329124879|gb|AEB74824.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
          Length = 458

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 140/344 (40%), Gaps = 55/344 (15%)

Query: 64  IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HP 114
           I +GAE  +  +  +++D     ++A I  + P LV  +  +  ++  +   G     H 
Sbjct: 52  IEKGAEIYIGHNKDNIKDVDLVVYTAAIPDSNPELVRAHELQIPTMDRAEFLGHVMQGHK 111

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLA 171
            NI A++GT GK++  S +  I   + L      PT  +         N     S  ++ 
Sbjct: 112 YNI-AISGTHGKTTTTSMLSHITLSANLD-----PTILVGGNLDVINGNVRVGNSDYFVT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y +S              L  +   GI L      N+  DH+D+++      N  +
Sbjct: 166 EACEYKASF-------------LKFYPYIGIIL------NIEADHLDFYKDINDIQNTFL 206

Query: 232 RLFEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + F +L+PK+   I+ ADD    A SKEV        C V++ G     +  K +    N
Sbjct: 207 K-FAKLIPKDGFLIVNADDERCLAVSKEV-------DCNVMTFGINNGEVRAKNIE--FN 256

Query: 288 KQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             + T  V   D   F     +PG   + ++L +    +++ +D+  ++E L   +    
Sbjct: 257 NGRPTFDVYRNDTKLFSLTLNVPGNHNILDSLASISASLSLNVDTDSIIEGLSTFYGAHR 316

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           RFE  G    G  +  DYAH    ++  L   +     RII +F
Sbjct: 317 RFEIKGE-LNGITVVDDYAHHPTEIKAALNAAKNFPHNRIICIF 359


>gi|261876162|ref|YP_697180.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           ATCC 13124]
 gi|255529905|gb|ABG83104.2| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens ATCC
           13124]
          Length = 466

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 63  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 122

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 123 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 177 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +   + K   T 
Sbjct: 217 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 272

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 273 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 332

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   +I+ VF
Sbjct: 333 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 369


>gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
 gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
          Length = 467

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 39/228 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR   AG IF A+ G   DGHLF   A+  GA  IV   A  +         +   
Sbjct: 32  VQTDSRLSTAGSIFFALRGETTDGHLFAHTAVENGATLIVAERALDI---------DVAQ 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           ++V++    L   A  +  +  EN    +LAVTG++GK++  + ++ I +R G +   + 
Sbjct: 83  IIVNDGVTALQALARAVVARVRENGQLKVLAVTGSNGKTTTKNMLRTILEREGET---VA 139

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS----VEASSHGL-DQHRLDGIK 203
           P     SF  D      +PI +          GVT+ S    VE  + G+ D  RL  I 
Sbjct: 140 PK---GSFNND----VGAPITM---------LGVTNSSKYLVVEMGADGIGDITRLQSIV 183

Query: 204 LI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +   G    +G  HI           AK  +    LP +S A++  DD
Sbjct: 184 MPDVGIVLMVGLAHIGKFGDAATTALAKSEMVTA-LPPQSTAVLNYDD 230


>gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289]
 gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289]
          Length = 826

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 159/366 (43%), Gaps = 30/366 (8%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++  I+ V +DSR +      +F A+   + DGH +IP+   +G    VV +    +D++
Sbjct: 20  KDADISFVLTDSRSLCFPEETLFFALKSERNDGHNYIPELYGRGVRNFVVETV--PEDWN 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                ++  L V  + + L   A R   ++   ++ +TG++GK+ V  ++ Q      L 
Sbjct: 78  KRY-PDSNFLKVVGSLEALQRLAERHRDEYLIPVVGITGSNGKTMVKEWLYQ------LL 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           S Q+  T +  S+  ++++  P  + L   L+  +  GV    +  S  G      D I+
Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVLL---LNENTQVGVFEAGI--SQPGEMSALRDIIQ 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHN 262
              G FT LG  H +   + +A    K+ LF      ++ AI+Y+ DD      +     
Sbjct: 184 PTIGVFTCLGSAHQENFPSLEAKCKEKLHLFH-----DTQAIVYSLDDEVLNRCLDEYDY 238

Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAG 320
            G ++  S   +    ++K +     +  VT + + GK+  +  P   +  V N++  A 
Sbjct: 239 KGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVENSITCAV 298

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIR 377
             + +G+  A + E + +L  V  R E V     G  +  D Y    NSL++ L   N R
Sbjct: 299 TALQLGVTPAALGERMAQLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIALDFMNRR 357

Query: 378 TITSGR 383
               GR
Sbjct: 358 PDHKGR 363


>gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
 gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
          Length = 449

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 148/377 (39%), Gaps = 57/377 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  V  DSR I+   +FV + G + DGH F  QA   GA A + S          TI
Sbjct: 19  ETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHP--------TI 69

Query: 87  RSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                ILV  V +T K     A     K    I+ +TG++GK++    V+ +  +     
Sbjct: 70  EPPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQ----K 125

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHV-SVEASSHGLDQHRLDG 201
           +Q   T        +N L  P  I  A   +   +   G+ H   +E  S   +      
Sbjct: 126 YQTYKTQG----NHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPD---- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSK 254
               A + T +G  HI+   +++    AKM +   L       +P + P +    + +  
Sbjct: 178 ----AAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLL----EPFVP 229

Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + +     G   L+ G  QG  +         ++ Q   +V G  F    P+ G + V 
Sbjct: 230 NLTQTIETFG---LTEGDLQGDIVE-------ESQDQTIFTVAGTTFT--LPVLGGYNVK 277

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NAL+A G+    G+    + E L    +   R ++V T   G  I  D Y     ++ ++
Sbjct: 278 NALIAIGIGRHFGVADEAIKEGLAHFQLTKNRTQWV-TAGNGAAILSDIYNANPTAMGLV 336

Query: 373 LKNIRTIT-SGRIIVVF 388
           L + R +  +GR I V 
Sbjct: 337 LDSFRKLPLAGRRIAVL 353


>gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar
           Abortus 2308]
 gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis bv. 5 str. 513]
 gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 9 str. C68]
 gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin
           Cpn60:Cytoplasmic peptidoglycan synthetases,
           C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus
           2308]
 gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis M5-90]
          Length = 481

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|187932212|ref|YP_001892197.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229620042|sp|B2SE51|MURC_FRATM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187713121|gb|ACD31418.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 451

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 145/367 (39%), Gaps = 42/367 (11%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+TGT GK++ +S +  + CQ    SSF +G    +  +A  N                
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L    +I    TN+  DH+    T    +   +  F +
Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            + KES   IY   DD   ++++ + + +   V S G+     + +     I       I
Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSIDADVQIYDYHIIDEITHFKI 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      
Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            G ++ V  DY H    +   +  +R    + +II VF     R    R ++     AL 
Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378

Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           LAD  I+      S D + I+     +I+ G+ G++       AI    ++ N+  V+++
Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILI 436

Query: 465 AGKGHET 471
            G G  T
Sbjct: 437 QGAGDVT 443


>gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
          Length = 885

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 130/337 (38%), Gaps = 26/337 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TGT+GK++V   +  I + +G   + +G T+T   +   + +        A A + 
Sbjct: 481 IIAITGTNGKTTVTRMIGHIWRTAG---YCVGMTTTDGIYIDGHCIQKGDTTGPASARAV 537

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ----AYFNAKMR 232
           L+   V    +E +  G+ +  L   +   G  TN+  DH+     +     AY  +   
Sbjct: 538 LTDPTVEVAVLETARGGIVRGGLAFDQCDVGIITNITEDHLGQDGIEDLDDLAYIKS--- 594

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGC------------RVLSVGYQGKFIHLK 280
           L  E +     A++ ADD Y   +  R                  R L +G +  F+   
Sbjct: 595 LVVETVRPGGYALLNADDPYVVRLAGRVRGEVVYFSTEADNIVVRRHLGIGGKAFFVKDS 654

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            + A        I   G D            + NALVAA  C  + +    + + L    
Sbjct: 655 ILYAACGSLASPICAVG-DIPVTLGGIAVHNLQNALVAAAACYCLKVPMTHIRQGLATFD 713

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR   +       R+ +DY H     + ++  +R + + R++ V    GDR      
Sbjct: 714 QNPGRLNLLTLGDI--RVCIDYGHNPAGYQALINTVRRLGATRLVGVIAAPGDRRDDVIV 771

Query: 401 IMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGI 436
            +G+IA    D I I  D + R   P ++   +  G+
Sbjct: 772 NVGRIAGRGFDYIYIKEDADRRGRAPGEVAQLLRRGV 808


>gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
 gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
          Length = 474

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R  + +S D+R +  G +F AI G   DGH F+  A  +GA   VV  A+     +  + 
Sbjct: 26  RDASGISIDTRTLAPGDLFFAIKGEARDGHDFVAAAFERGAAGAVVDEAH-----AGALA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              P+ VV + ++ L    +R   +    ++ VTG+ GK+S       +  R G
Sbjct: 81  GRAPLYVVKDVQESLERLGARARERSAAYVVGVTGSVGKTSTKEMAAAVLSRFG 134


>gi|168213417|ref|ZP_02639042.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
 gi|170715048|gb|EDT27230.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
          Length = 457

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 54  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +   + K   T 
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   +I+ VF
Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360


>gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 440

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V  DSR ++AG +FV + G + DGH +I   I +GA A++V       D       
Sbjct: 22  QVQGVKVDSRAVEAGDLFVCLKGARVDGHDYIEDVIGKGAVAVLVDHKIDNLDVCQ---- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               ++VD+T   L LFA           + +TG++GK+S    +  I  R G S
Sbjct: 78  ----IIVDDTMAALQLFAKAYRDTLNATFIGITGSNGKTSTKDILFSILSRVGNS 128


>gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella neotomae 5K33]
 gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
          Length = 481

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|296284502|ref|ZP_06862500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 489

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 150/369 (40%), Gaps = 33/369 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +FVA+ G   DGH FI +A A GA A +V               + P 
Sbjct: 49  VEMDSRDVRPGDLFVALKGEAMDGHRFIDKAFAAGAAAAIVDRPI-----------DWPH 97

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++T   L   A+    +     +AVTG+ GK+ V   +     R+           +
Sbjct: 98  VLVEDTTAALHALAAAARTRGEATRIAVTGSVGKTGVKEAIFSALDRASRGQAH----RS 153

Query: 153 ISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + S+  +N +  P  +     +A   +   G+ H    A    L  H    + +I    T
Sbjct: 154 VRSY--NNHVGVPLSVARMSPRARYGVFEMGMNHAGEIAP---LADHVRPDVAVI----T 204

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   HI+   + +A  + K ++F  L P  + AII AD    + +   A  AG  V S 
Sbjct: 205 TIAPAHIENLGSLEAIADEKAQIFTGLKPGGA-AIIPADSEQFERLKAHAEAAGAEVFSF 263

Query: 271 GY--QGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           G     +   L  + A +     VT  ++     +    PGE  + N+L       A+G 
Sbjct: 264 GRADHARVRLLDAIPAANGGASLVTAQIDDTRLCYSVAEPGEHWIANSLAVMACIYAVGG 323

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSN--SLEMILKNIRTITSGRI 384
           D       L ++  + GR       + GGR + +D ++ +N  S+   L  +    + R 
Sbjct: 324 DLGAAGIALGEMGGLKGRGARHAIAAAGGRALLIDESYNANPASMRATLTQLGQTPASRR 383

Query: 385 IVVFGCGGD 393
           I V G  G+
Sbjct: 384 IAVLGAMGE 392


>gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
          Length = 449

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 148/349 (42%), Gaps = 48/349 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q         G  
Sbjct: 75  KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + ++G    ++S A D    T   I+           G+ H   +     L Q     I 
Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH---KGEIRELVQILKPNIT 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHN 262
           +I    TN+   H+++  + +    AK  +F     K   A+I AD + Y+K +    + 
Sbjct: 179 MI----TNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFP-LPGEF-QVYNALVA 318
           +   + S G   K    + +   +  +QV +   +  K  D   P +P  F + Y  ++ 
Sbjct: 234 SITDIHSFGRSAK-TSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL- 291

Query: 319 AGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             L I I G D  +   HL  +    GR E +  N +  R+  DY + S
Sbjct: 292 --LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336


>gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
 gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
          Length = 481

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|50512588|gb|AAT77678.1| FolC-P protein [Haloferax volcanii]
          Length = 838

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 149/386 (38%), Gaps = 56/386 (14%)

Query: 120 VTGTSGKSSVASFVQQICQRSG-------------------LSSFQIGPTSTISSFAQD- 159
           V G++GK S A  V  + + SG                   +   +I P S +S+F  + 
Sbjct: 44  VAGSNGKGSTARMVDAMLRESGAHVGLYTSPHFDDVRERVRVDGRKI-PKSALSAFVAEA 102

Query: 160 -----NRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                 R     P+       A AL Y    GV  V+V     G +      +  +A + 
Sbjct: 103 KPYLVERAADGEPLTFFETVTALALWYFDRAGV-DVAVLEVGMGGELDATSAVDPVASAV 161

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H        A   AK +    + P ++P +       + E +         VL+
Sbjct: 162 TNVSLEHTAVLGDTVAEI-AKTKA--AVAPADAPLVT----GTTGEALSVIREEAGDVLT 214

Query: 270 VGYQGKFIHLKKVCAI-----HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           VG            +      H +  VT+  + +  D   PL G +Q  NA +A  L   
Sbjct: 215 VGDADADSDADVRVSYGGRVNHQEAAVTVETDAETLDVRIPLLGAYQARNAGIAVSLARQ 274

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   ID+  +   L   H  PGRFE +GT      + +D AH  ++   +   +      
Sbjct: 275 VRPDIDAEAIHRGLRNAH-WPGRFEVMGTEP---TVVLDGAHNPDACAQVATVLDEFDYD 330

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFI 440
            + +V+G   D+D G+  ++G +  ++A +     D  R EDPE + +  E ++G P   
Sbjct: 331 DLHLVYGAMHDKDHGE--MVGALP-EVASVVTCKADISRGEDPEILSSVFERLNG-PAVE 386

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
             G    A+  A    +  D ++VAG
Sbjct: 387 TGGAVAAALDRARARADPDDCVLVAG 412


>gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL001PA1]
          Length = 485

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P LVV
Sbjct: 31  DTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LPHLVV 81

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
           D+ +  LS  A  +     E     +AVTG+SGK+S    + QI     L +F  GPT +
Sbjct: 82  DDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQI-----LETF--GPTVA 134

Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186
            + SF  +N +  P     S    +  +S + ++G+ H+S
Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172


>gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis bv. 3 str. 686]
 gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
 gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
          Length = 481

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|119897171|ref|YP_932384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
 gi|119669584|emb|CAL93497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
          Length = 478

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 4/110 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + V +DSR I  G +FVA+ G + DGH F+  A+  GA A +V +    + F+    +
Sbjct: 31  RFSSVGTDSRGIIPGQLFVALRGERFDGHEFVAAALKAGAAAAMVDA----RGFTEFGDA 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           + P+LVVD+TR  L   A+    +    ++ VTG++GK++V     +I +
Sbjct: 87  SLPLLVVDDTRLALGTLAATWRARFAIPVIGVTGSNGKTTVKEMCAEILR 136


>gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF)
           [Rickettsia prowazekii str. Madrid E]
 gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-
           2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF)
           [Rickettsia prowazekii]
 gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           prowazekii Rp22]
          Length = 449

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 46/348 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH +I  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--------RSGL 142
            I++V+N+ + L   A           +A+TG+ GK+S    ++ + Q        R   
Sbjct: 75  KIILVNNSFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +++ +G    ++S A D    T   I+           G+ H   +     L Q     I
Sbjct: 135 NNY-LGLLINLASMADD----TEYAIF---------ELGMNH---QGEISELVQILKPNI 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +I     N+   H+++  + +    AK  +F+     +   I  +++ Y+K +    + 
Sbjct: 178 AMI----NNISEAHLEFFHSLEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNL 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFP-LPGEFQVYNALVAA 319
           +   + S G+  K    K +      +QV +   +  K  D   P +P  F   N     
Sbjct: 234 SITNIYSFGHSSK-ASAKLILYKTLGEQVHLQYYINNKFIDITIPFIPRHFA--NNYTGV 290

Query: 320 GLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            L I I G D  +  ++L  + +  GR + +  N +  R+  DY + S
Sbjct: 291 LLIIDILGKDIEISAKYLADIALTKGRGKII--NIQNSRVICDYYNAS 336


>gi|171742515|ref|ZP_02918322.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
 gi|171278129|gb|EDT45790.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
          Length = 489

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 29/156 (18%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G                     + KA
Sbjct: 112 PARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG--------------------NIGKA 151

Query: 174 LSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +S+ +      V  VE SS  L  H  D + L   + TN+  DH+D+H     Y   K +
Sbjct: 152 VSHAAVDPANDVLCVELSSFQL--HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAK 209

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCR 266
           +F     + S A++Y ADD    E+ +RA  A GCR
Sbjct: 210 VFH----RASKALVYNADDIRVTELAERAETAEGCR 241


>gi|311113341|ref|YP_003984563.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
 gi|310944835|gb|ADP41129.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
          Length = 494

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 156/378 (41%), Gaps = 46/378 (12%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRS 140
           S  I  + P L+    +    L  S           ++AV GT GKS+ +S +  +  + 
Sbjct: 94  STAIHEDNPELIAARAQNLRVLHRSEALAAAMGASQVVAVAGTHGKSTTSSMIAVMLDKL 153

Query: 141 GL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G   SF +G  + I+ +  + RL               + +G   V+    S G      
Sbjct: 154 GFHPSFAVG--TVIAGYGSNARLGA-------------TGEGSWFVAEADESDGSFVRYQ 198

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             I ++    TN+  DH+D+++T +  + A  R    ++P       + DD  ++ + +R
Sbjct: 199 PAIAVV----TNVEPDHLDFYETPERVYEAFNRFVASMVPGGVLVTCW-DDEGARALAER 253

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS---------VEGKDFDFLFPLPGE 309
           A +AG  V++ G   +  + + ++ +  ++   T+           EG+  D    +PG 
Sbjct: 254 ARDAGIEVVTYGQSTEADLRVSRITSHGSESSATLRWSFECASKHYEGEQ-DAQLRVPG- 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYVDYAHTS 366
             ++N L AA   I   +  A   +    L+   G   RF   G +  G +++ DYAH  
Sbjct: 312 --IHNQLNAAAAFITALLAGAQPEDAAAALYGFGGADRRFTLRG-DVAGIKVFDDYAHHP 368

Query: 367 NSLEMILKNIRTITSG-RIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   L+  RT+  G  + VVF      R Q       + AL  AD + V D  P  E 
Sbjct: 369 TEVFRALETGRTVADGHNLYVVFQPHLFSRTQEFAADFAQ-ALSKADRSYVLDIYPAREL 427

Query: 425 P-EKIRAEIIHGIPGFIE 441
           P E + +E+I G  GF E
Sbjct: 428 PIEGVTSELITGA-GFSE 444


>gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11A3]
          Length = 457

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 130/310 (41%), Gaps = 41/310 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR +    +F+AI G   DGH F+P  + +G +++V+            + SN P 
Sbjct: 31  ISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVLDKGVQSVVIKKG-----MQRLLPSNFPY 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145
            VV++T +     A     K    I+A+TG+ GK++    +  +  + G      ++F  
Sbjct: 86  WVVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNN 145

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG   TI ++  +D  L              +  +G+  +        L ++    I +
Sbjct: 146 EIGVGLTILATEIEDKALVLE-----------MGMRGLGQI------ENLSKYSEPDIAV 188

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA- 263
           I    TN+G  HI    +++    AK  + + L P E   II A+D + ++ +K      
Sbjct: 189 I----TNIGTAHIGLLGSKKNITYAKCEISKYLNP-EGVVIIPANDPFLEKTLKEVWKGR 243

Query: 264 --GCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
               R+L++   +  F     +   +N    TI +E   F+    L G     N L A  
Sbjct: 244 VIKVRILNIENKKDSFKKENNLRGFYNPSNKTILIEENIFE--ISLEGFHNASNFLFAYA 301

Query: 321 LCIAIGIDSA 330
           +   +GID A
Sbjct: 302 VAKELGIDFA 311


>gi|323706122|ref|ZP_08117691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534566|gb|EGB24348.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 454

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 138/323 (42%), Gaps = 47/323 (14%)

Query: 53  KEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           KE G +F    +   +  G E +VVS   S+      +  +  I V+         FA R
Sbjct: 50  KEKGVIFCFKKVTDELLNGTEMVVVSPGISMDSDIVVLSKSKGIDVIGEVE-----FAYR 104

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L  K P  I A+TGT+GK++  S + +I + SG+ ++  G             +  P   
Sbjct: 105 L-SKAP--IYAITGTNGKTTTTSLLGEIFKASGVKTYVAG------------NIGYP--- 146

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L +A    +++ V  +  E SS  L+   +   K +  +  N+  DH++ H+T + Y  
Sbjct: 147 -LVEAAINANAEDV--IVAEISSFQLET--IKEFKPVISAIINITPDHLNRHKTLENYIE 201

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVC 283
            K R+FE     +   + Y DD     + K+A    C V           G ++   K+ 
Sbjct: 202 IKGRIFENQTADQFTVLNY-DDKNISSLFKKAK---CNVFPFSRNRALEYGTYLENGKII 257

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N ++ TI     D + ++ +PG   V NA+VA+ +    GID  ++ E L     V 
Sbjct: 258 ISANGEKSTII----DIEDIY-IPGNHNVENAMVASTMAYLAGIDIKVISETLRTFKGVE 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTS 366
            R EFV  N  G + Y D   T+
Sbjct: 313 HRIEFV-RNVNGVKYYNDSKGTN 334


>gi|306822428|ref|ZP_07455806.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|309802475|ref|ZP_07696581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553973|gb|EFM41882.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|308220875|gb|EFO77181.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
          Length = 480

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 29/156 (18%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G                     + KA
Sbjct: 103 PARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG--------------------NIGKA 142

Query: 174 LSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +S+ +      V  VE SS  L  H  D + L   + TN+  DH+D+H     Y   K +
Sbjct: 143 VSHAAVDPANDVLCVELSSFQL--HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAK 200

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCR 266
           +F     + S A++Y ADD    E+ +RA  A GCR
Sbjct: 201 VFH----RASKALVYNADDIRVTELAERAETAEGCR 232


>gi|210623279|ref|ZP_03293696.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
 gi|210153680|gb|EEA84686.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 134/343 (39%), Gaps = 54/343 (15%)

Query: 66  QGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPEN 116
           QGAE  +     ++ D      ++A I  +   L+    +  L +  +   G   +  +N
Sbjct: 44  QGAEIFIGQRKENISDDVNMVVYTAAIHPDNEELMAARKKNKLIVNRAAFLGQIMREYKN 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
            +AV+GT GK+S  S +  I + + L      PT  +    S    N     S  ++ +A
Sbjct: 104 SIAVSGTHGKTSTTSMLSAIFEYADLD-----PTILVGGNLSMIGGNVKIGHSNHFITEA 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y+ S              L+ +    I L      N+  DH+DY         A    
Sbjct: 159 CEYVDSF-------------LNFNPKISIVL------NIEEDHLDYFSGIDE-IKASFNK 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG------KFIHLKKV-CAIH 286
           F +LLP +   II  DD  + +++   ++    V+  G         K I   ++ C I 
Sbjct: 199 FGKLLPPDGYFIINGDDENTADIL---YDVKATVIKYGSNKDNDAVIKNIEFDELGCGIF 255

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +     +   G+D   F   + G   +YNA+ A    I  GID   +  +++K   V  R
Sbjct: 256 D-----LVYNGEDLGKFELSVRGLHNIYNAVAAIITSIVSGIDVETIKRNIKKYRGVGRR 310

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           FEF G    G  I  DYAH    L+  L   + I   R+  +F
Sbjct: 311 FEFKGK-YNGATIVDDYAHHPTELKSTLSTAKRIKKNRLWCIF 352


>gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis BS107]
          Length = 470

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           WR   ++ +S D+R I AG +FVA+   + DGH F+ QA+ +GA A +VS          
Sbjct: 21  WR---VDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPE 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            +  + P+L+VD+ +  L         +    ++AVTG+ GK+S    + ++    G
Sbjct: 71  GVGDDAPLLLVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQG 127


>gi|56476231|ref|YP_157820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum
           aromaticum EbN1]
 gi|56312274|emb|CAI06919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Aromatoleum aromaticum EbN1]
          Length = 466

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 25/245 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +DSR I+AG +FVA+ G + DGH F+ QA A GA A +V + ++    +  + S  
Sbjct: 21  SSVGTDSRKIKAGQLFVALRGERFDGHEFVVQAAADGAAAALVDARWA---GTQPVPSPL 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI----CQRSGLSSFQ 146
           P+LVV++TR  L   A+    +    ++ VTG++GK++V      +     +R G  +  
Sbjct: 78  PLLVVEDTRLALGRLAAHWRARFELPVIGVTGSNGKTTVKEMCTAVLRAQARRDGHGAEA 137

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +   +T  +   D  L    P+ L   L   SS     V +  +  G   +     +   
Sbjct: 138 V--LATAGNLNNDIGL----PLTL---LELRSSHRAAIVEMGMNRPGEIAYLAGLARPTV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNA 263
              TN  R H+    T       K  ++E L P +  A+I ADD    Y +E+     NA
Sbjct: 189 AVVTNAQRAHLQGMGTVIGIAREKGAIYEALGP-DGVAVINADDTQAGYWREL-----NA 242

Query: 264 GCRVL 268
             R L
Sbjct: 243 ARRTL 247


>gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL060PA1]
          Length = 485

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P LVV
Sbjct: 31  DTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LPHLVV 81

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
           D+ +  LS  A  +     E     +AVTG+SGK+S    + QI     L +F  GPT +
Sbjct: 82  DDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQI-----LETF--GPTVA 134

Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186
            + SF  +N +  P     S    +  +S + ++G+ H+S
Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172


>gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA2]
 gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA3]
 gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA4]
 gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA2]
 gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL103PA1]
          Length = 485

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P LVV
Sbjct: 31  DTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LPHLVV 81

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
           D+ +  LS  A  +     E     +AVTG+SGK+S    + QI     L +F  GPT +
Sbjct: 82  DDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQI-----LETF--GPTVA 134

Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186
            + SF  +N +  P     S    +  +S + ++G+ H+S
Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172


>gi|319424769|gb|ADV52843.1| UDP-N-acetylmuramate/alanine ligase [Shewanella putrefaciens 200]
          Length = 488

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 47/274 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  +  ++G   +F IG    ++S   + RL T S   +A+A   
Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADES 179

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH+D +        +   
Sbjct: 180 DASFLHLQPMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFV 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-- 290
            F   LP    A++  DD   +E+M R    G  +++ G+         V A++  QQ  
Sbjct: 217 DFLHNLPFYGVAVVCIDDPVVREIMPRI---GRHLVTYGFSDD----ADVQALNFSQQGH 269

Query: 291 ---VTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               T+  +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF
Sbjct: 270 QCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSALIQALAEFQGIGRRF 329

Query: 347 EFVG--TNSRGGRIYV-DYAHTSNSLEMILKNIR 377
           + +G     +G  + V DY H  + +   +K  R
Sbjct: 330 QHLGKFATPKGEVMLVDDYGHHPSEVAATIKAAR 363


>gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 300

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 13/112 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V   + +Q       +  P 
Sbjct: 24  VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVE--HEVQG------AALPQ 75

Query: 93  LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+   +     +   P  + AVTG+SGK++V   +  I +  G
Sbjct: 76  LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 125


>gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
 gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
          Length = 456

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 150/376 (39%), Gaps = 50/376 (13%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +  + +   DSR I  G +FV + G + DGH FI  A   GA A           FS
Sbjct: 20  QFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             +    P ++V++        A+    K   ++ AVTG++GK++    + Q+   + L+
Sbjct: 69  EKVVEGHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLT 128

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGI 202
               G          +N +  P  +           +G   + +E    H  D H L  +
Sbjct: 129 YKTQG--------NYNNEIGLPYTVLHM-------PEGTDKLVLEMGQDHLGDIHLLSEL 173

Query: 203 KLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMK 258
                +   L G  H+++ + +      K+++ +  +P+    ++ AD   +AY  E  K
Sbjct: 174 AHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADG-MPEGGLLVVPADPIVNAYLPEKQK 232

Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                   V+  G   + FI       I  K  +T      +     P+ G++   NA++
Sbjct: 233 --------VVRFGPDEEIFI----TELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMI 280

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA + +  G+  A + +  E L +   R E+    + G  I  D Y     ++ +IL+  
Sbjct: 281 AAYVALQEGVSEAAIRDSFETLQLTRNRTEWKKAGN-GADILSDVYNANPTAMRLILETF 339

Query: 377 RTITS---GRIIVVFG 389
            TI +   GR + V  
Sbjct: 340 STIPANPNGRKLAVLA 355


>gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
 gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
          Length = 454

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 26/223 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ ++S+D+R I  G +F+A+ G   DGH F  +A+  GA A+V                
Sbjct: 24  EVKDISTDTRTITEGSLFIALKGANFDGHDFAAKAMELGAIAVVTERPV----------D 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               L+VD+T + L   AS    K    ++ +TG+ GK++    +  +  R    SF+  
Sbjct: 74  GARCLIVDSTAQALLDSASYYRSKFDIPLVGITGSVGKTTTKEMIYSVLSR----SFK-- 127

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAG 207
              T+ + A  N     + + + K L  L +     V     +H  +  R+    K    
Sbjct: 128 ---TLKTEANHN-----NEVGMPKTLLELDNTHQAAVIEMGMNHKGEISRMSTSCKPTIC 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             TN+G  HI+   +Q+    AKM + +     ++P I+  DD
Sbjct: 180 VITNIGVSHIENLGSQEGILKAKMEILDG-ASADAPLILCRDD 221


>gi|315103158|gb|EFT75134.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA2]
          Length = 471

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L   L   R   + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRAVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGEMVH 415


>gi|237747018|ref|ZP_04577498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
 gi|229378369|gb|EEO28460.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
          Length = 498

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 25/142 (17%)

Query: 102 LSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           + +FA  L G   E     N++AVTGT+GK++V S    +C+R+G +    G    IS  
Sbjct: 101 IEMFAQALKGLEKERQYRPNVIAVTGTNGKTTVTSLTGHMCRRAGKTVRLAG---NISPA 157

Query: 157 AQDNRLTTPSPIYLAK--ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           A D  L       L +   L   S Q  T  S+EA +                +  NL +
Sbjct: 158 ALDVLLDVIRKDQLPEIWVLELSSFQLFTTYSLEADT---------------ATVLNLTQ 202

Query: 215 DHIDYHQTQQAYFNAKMRLFEE 236
           DH+D+H + +AY  AK R+F E
Sbjct: 203 DHLDWHGSMEAYGAAKERIFGE 224


>gi|120597222|ref|YP_961796.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|146291595|ref|YP_001182019.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
 gi|166224730|sp|A4Y2N7|MURC_SHEPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224732|sp|A1REZ7|MURC_SHESW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120557315|gb|ABM23242.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|145563285|gb|ABP74220.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
          Length = 488

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 47/274 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  +  ++G   +F IG    ++S   + RL T S   +A+A   
Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADES 179

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH+D +        +   
Sbjct: 180 DASFLHLQPMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFV 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-- 290
            F   LP    A++  DD   +E+M R    G  +++ G+         V A++  QQ  
Sbjct: 217 DFLHNLPFYGVAVVCIDDPVVREIMPRI---GRHLVTYGFSDD----ADVQALNFSQQGH 269

Query: 291 ---VTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               T+  +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF
Sbjct: 270 QCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSALIQALAEFQGIGRRF 329

Query: 347 EFVG--TNSRGGRIYV-DYAHTSNSLEMILKNIR 377
           + +G     +G  + V DY H  + +   +K  R
Sbjct: 330 QHLGKFATPKGEVMLVDDYGHHPSEVAATIKAAR 363


>gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
 gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
          Length = 454

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR IQ G +F A+ G + D H F+   +A GA A+VV
Sbjct: 8   FICQTLGLPMPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +D +A   +    L VD+T   L   A          +  +TG+SGK++V   +
Sbjct: 68  SR----EDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKTTVKEML 119

Query: 134 QQICQ 138
             + +
Sbjct: 120 AGVLR 124


>gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
 gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
          Length = 458

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 153/374 (40%), Gaps = 36/374 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G +FVA+ G + D H FI   +A+GA A++VS           + +  P 
Sbjct: 24  VHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAAVLVSR---------EVDAAVPA 74

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V  +TR  L    +    +     +AVTG++GK++V   +  I   +      +G    
Sbjct: 75  IVAPDTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAA------VGEDQR 128

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +   +A   L+    G+ H        G+ Q  +  I       
Sbjct: 129 LATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVAVI------- 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAGC 265
           TN  R+H ++          +       LP +  A+   D     AY+   + RA     
Sbjct: 182 TNAQREHQEF-MVSVEAVAHEHAAAIAALPADGVAVFPLDAESGGAYAP--VWRAAAGTR 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           RVLS G   +      V  +   Q + +   G  F+    L GE  V NAL A    +A 
Sbjct: 239 RVLSFGTTQQADVHATVELVDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACALAA 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383
           G+    +   L +   V GR +   T +  G + +D  + +N  S+   +  +    + R
Sbjct: 299 GVHVPAIQAGLAEFKPVKGRLQVKYTPA--GTVVIDDTYNANPDSMRAAIDVLAGFAAPR 356

Query: 384 IIVVFGCGGDRDQG 397
           ++V+   G   DQG
Sbjct: 357 VLVLGDMGEVGDQG 370


>gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
 gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
          Length = 430

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 151/400 (37%), Gaps = 99/400 (24%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-SLQDFSATI-- 86
            N V++DSR +    +F+ + G ++DGH +I QA+ QGA+ ++  +A+  +Q+ +  I  
Sbjct: 26  FNSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQQGADCVLADAAHLDIQENAQHILV 85

Query: 87  ---RSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGL 142
              R     + V+ T K L   A+    + P+ + + VTG++GK++    +  I      
Sbjct: 86  LCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKIGVTGSNGKTTTKELLASI------ 139

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-------EASSHGLD 195
                        FAQ  R          K    L+S+    +SV       E     L 
Sbjct: 140 -------------FAQKYRTV--------KNEGNLNSETGLPLSVFTITKEHEVGIFELG 178

Query: 196 QHRLDGIKLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +R   I  +A          TN+G  HI    ++ A    K  +F     + S   + A
Sbjct: 179 MNRKGEIAELAAVLKPNIAVITNIGTAHIGMLGSKDAIAQEKKHIF-SCFDETSVGFVPA 237

Query: 249 DDAYSKEVMKRAHNA--------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            D Y++ +    H                G     + Y+G+ IHL               
Sbjct: 238 QDKYAEFLQDVPHGKIVTYSADPDAYTLEGLSGAEIRYKGETIHL--------------- 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PLPG+  V+NA  A  +     I    +   +E++  + GR + +    R
Sbjct: 283 ----------PLPGKHNVHNAFAAIAVAEYCKIPLQSIKAGIEQMQALFGRSQII----R 328

Query: 355 GGRIYVDYAHTSNSLEM-----ILKNIRTITSGRIIVVFG 389
           G   Y+   + +N   M     +  NIR   SG+ I V  
Sbjct: 329 GPVTYLLDCYNANPDSMNAGLALCANIR--VSGKKIYVLA 366


>gi|283456398|ref|YP_003360962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           dentium Bd1]
 gi|283103032|gb|ADB10138.1| murD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium dentium Bd1]
          Length = 480

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 29/156 (18%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G                     + KA
Sbjct: 103 PARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG--------------------NIGKA 142

Query: 174 LSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +S+ +      V  VE SS  L  H  D + L   + TN+  DH+D+H     Y   K +
Sbjct: 143 VSHAAVDPANDVLCVELSSFQL--HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAK 200

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCR 266
           +F     + S A++Y ADD    E+ +RA  A GCR
Sbjct: 201 VFH----RASKALVYNADDIRVTELAERAETAEGCR 232


>gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 457

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 53/336 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR      +F+AI G   DGH FIP+ + +G +++V+            + SN P 
Sbjct: 31  ISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVLNKGVKSVVIKKG-----MQRLLPSNFPY 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145
             V++T +     A     K    I+A+TG+ GK++    +  +  + G      ++F  
Sbjct: 86  WAVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNN 145

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   TI +   ++++              +  +G+  +        L ++    I +I
Sbjct: 146 EIGVGLTILATDIEDKVLVLE----------MGMRGLGQI------ENLSKYSEPDIAVI 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263
               TN+G  HI    +++   +AK  + + L P E   II A+D + ++ +K +     
Sbjct: 190 ----TNIGTAHIGLLGSKKNITHAKCEISKFLNP-EGVVIIPANDPFLEKTLKESWKGRV 244

Query: 264 -GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              ++L++  Q + F     +   +N  + TI +E   F+    L G     N L A  +
Sbjct: 245 IKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEENTFE--ISLEGFHNASNFLFAYAV 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +GID A              +F+FV   S GGR
Sbjct: 303 SKELGIDFASF-----------NKFDFV---SFGGR 324


>gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
          Length = 446

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 31/242 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R IQ G +F+A+ G   D + FI +A  QGA   VV+ A         +++  P+
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNRA---------VKTTLPL 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A     + P   + VTG+ GK++  + +  + ++ G         ++
Sbjct: 76  ICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209
             SF  +N +  P        L+ L  +   H +V    ++H  +   L G+ K      
Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAII 179

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G  H++   + +    AK  +FE  L  +  A+I  DD +++     AH+   R++S
Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRPLAHSR--RIIS 236

Query: 270 VG 271
            G
Sbjct: 237 FG 238


>gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2
           ,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 473

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 32/238 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +F A  G + DGH +  +A+  GA A++ +    +           P +VV
Sbjct: 34  DSREVAPGSLFAAFAGERVDGHDYARRAVEAGAAAVLAARPVGV-----------PAIVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++    L   A  +  +    ++ +TG++GK+S    + Q+ QR G + +  G       
Sbjct: 83  EDVVGALGALARAVVERLGTTVVGLTGSAGKTSTKDLIAQLLQRKGPTVWTPG------- 135

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGSFTNLG 213
            + +N +  P     A A +        H+ +E  + G+   R   D      G   N+G
Sbjct: 136 -SLNNEIGLPVTALTATAET-------EHLVLEMGARGIGHIRYLADLTPPRIGLVLNVG 187

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             H+    +++A   AK  L  E+LP++  A++ ADD   + +  R      RVL  G
Sbjct: 188 SAHLGEFGSREAIAQAKGELV-EVLPEDGCAVLNADDPLVRAMASRTR---ARVLLFG 241


>gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
 gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
          Length = 464

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R      +F  + G K D H ++ +AI QG  A+VV    ++         N P 
Sbjct: 28  ISTDTRQAVEKGLFFVLKGEKFDAHDYVEKAIEQGCVALVVERELAV---------NVPQ 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++V++TR  L   A  L  +     +A+TG+SGK++V     +I Q+
Sbjct: 79  IIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|5834369|gb|AAD53935.1|AF179611_19 UDP-N-acetylmuramate-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 112/283 (39%), Gaps = 34/283 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AV GT GK++  S V  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGIDPTVIN-GGIINSYGSNARLGDSDWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   I    TN+  +H+D++ + +   +A +  F
Sbjct: 162 ------------VEADESDGSFLRLDGTLAIV---TNIDPEHLDHYGSFEKVQDAFVE-F 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
              +P    A +  D    + ++ R  +   R+++ G+  +  I    +  I    + T 
Sbjct: 206 VSNVPFYGAAFLCIDHPVVQSILPRIRDR--RLITYGFSAQADIRAVDITPISGGNRFTA 263

Query: 294 SVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            + G+D D         P+PG   + NAL A G+ +   I  A + +   +   V  RF 
Sbjct: 264 VIRGRDGDIRRIENIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFS 323

Query: 348 FVG-TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
            VG      G + V  DY H    ++ +L   R     R+I V
Sbjct: 324 RVGEIKICDGSVLVIDDYGHHPVEIKAVLSAARESAQQRVIAV 366


>gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
 gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
          Length = 466

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 16/137 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V  DSR +  G +FV + G + DGH F  +A+ +GA A++           A +   
Sbjct: 26  IEAVRIDSRAVVPGSLFVCVPGARLDGHHFAAEAVEKGAAAVLADRPL------AGLPEG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           TP+L+V +T   L   A     +    ++AV+G++GK++V      I  +       +GP
Sbjct: 80  TPVLLVRDTVAALGRLARAWRERVGARLVAVSGSAGKTTVKELTAAILGK-------VGP 132

Query: 150 TS-TISSFAQDNRLTTP 165
           T+    +F  +NR+  P
Sbjct: 133 TAKNYKNF--NNRIGLP 147


>gi|227497586|ref|ZP_03927809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832955|gb|EEH65338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 497

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 159/362 (43%), Gaps = 48/362 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ +V +DSR  + G +FVAIVG + DGH  +PQA A GA A +VS+  +++   A    
Sbjct: 37  RVTDVVTDSRQAEEGSLFVAIVGERTDGHRHVPQAAAAGARAALVSNVEAVRAAMAEAGR 96

Query: 89  NT---PILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVASFVQQI 136
           +    P+++V +T   L   A     +  E         +++A+TG+ GK++     +QI
Sbjct: 97  DPESLPLVIVPDTVAALGGLARSHLAQLREQASSRGETLSVIAMTGSVGKTTTKDLTRQI 156

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASS 191
                  + Q    + ++SF  +N +  P  +  A   +      + + G  H++   S 
Sbjct: 157 L------AAQAPTVAPVASF--NNEIGLPLTVLRADHTTRYLVLEMGASGSGHIAYLTSI 208

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             LD          A +   +G  H+    +      AK  +   LLP    A++  DD 
Sbjct: 209 APLD----------AAAVLMIGHAHMGGFGSVDGVARAKSEIVTGLLPT-GVAVLNLDDP 257

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFL-FPL 306
            S  + + A     RVL+    G      +  A+   +Q    + + + G   + L   L
Sbjct: 258 RSAAMRELAPG---RVLTFSASGDPRADLRASAVELDEQAHAVLDLHLPGARPERLRLGL 314

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHT 365
           PG   V NAL AAGL +A G+D + VL+ L    +  P R +       GG + +D ++ 
Sbjct: 315 PGRHNVTNALAAAGLALAAGLDPSQVLQALAGAGLESPHRMDV---RECGGVLVIDDSYN 371

Query: 366 SN 367
           +N
Sbjct: 372 AN 373


>gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
 gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
          Length = 430

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 127/303 (41%), Gaps = 51/303 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R+I+   +F A+ G   +G+ F  +A+ QGA  +VV       D    +++    
Sbjct: 16  VDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVV-------DDKKFVKNKEHY 68

Query: 93  LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ++V N  + L   A   R Y   P  ILA+TG++GK++    V  +  R           
Sbjct: 69  ILVQNVLESLQKLAIFHRKYLGIP--ILAITGSNGKTTTKELVHSVLLR---------KF 117

Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIA- 206
            TI++    +N +  P        L+ LS    T   +    ++H L+   ++ +  IA 
Sbjct: 118 KTIATKGNLNNHIGVP--------LTLLSMDDHTEFGIVEMGANHPLE---IEFLCTIAN 166

Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN G+ H++   + +    AK  L++ L  +     +  DD      ++R H  
Sbjct: 167 PDYGYITNFGKAHLEGFGSLEGVVKAKTELYKNLQERHKLIFLNIDDE-----VQRKHEN 221

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                S G   +  + L     + N Q     +   + DF   L GE+   N  +AA LC
Sbjct: 222 YNHTFSFGESNEADVQLSYQSGLANAQ-----LNYNNTDFKSKLTGEYNAKN--MAAALC 274

Query: 323 IAI 325
           I +
Sbjct: 275 IGL 277


>gi|253681282|ref|ZP_04862080.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
 gi|253562520|gb|EES91971.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
          Length = 458

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 126/317 (39%), Gaps = 42/317 (13%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQIC 137
           ++A I  + P LV  +  +  ++  +   G     H  NI A++GT GK++  S +  I 
Sbjct: 75  YTAAIPDSNPELVRAHELQIPTMDRAEFLGHVMQGHKYNI-AISGTHGKTTTTSMLSHIT 133

Query: 138 QRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             + L      PT  +         N     S  ++ +A  Y +S              L
Sbjct: 134 LSANLD-----PTILVGGNLDVINGNVRVGNSDYFVTEACEYKASF-------------L 175

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +   GI L      N+  DH+D+++      N  ++ F +L+PK+   I+ ADD    
Sbjct: 176 KFYPYIGIIL------NIEADHLDFYKDINDIQNTFLK-FAKLIPKDGFLIVNADDERCL 228

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQ 311
           ++ K      C +++ G     +  K +    N  + T  V     K F     +PG   
Sbjct: 229 DISKEV---DCNIITFGINNGEVRAKNIE--FNNGRPTFDVYRNNTKLFSLTLNVPGNHN 283

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + +AL +    +++ +D+  ++E L   +    RFE  G    G  +  DYAH    ++ 
Sbjct: 284 ILDALASISASLSLKVDTNSIIEGLSTFYGAHRRFEIKGK-LNGITVVDDYAHHPTEIKA 342

Query: 372 ILKNIRTITSGRIIVVF 388
            L   +     +I  +F
Sbjct: 343 ALNAAKNFPHNKIFCIF 359


>gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
 gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 471

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 147/353 (41%), Gaps = 57/353 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVG-NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           V  +S+ IQ G +F+A+   N  DGH F+  A+A+GA+A++VS    L D +A    N  
Sbjct: 29  VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALARGADAVIVS---KLIDNNA----NDK 81

Query: 92  ILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF--QIG 148
           I++V+NT   LS  A+ R         + +TG+ GK+S    + ++      S++     
Sbjct: 82  IILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKV-----FSTYYKTFA 136

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                ++           PI    A+  LS+          SS G  Q  +  + L    
Sbjct: 137 SRKNFNNLLGMLLNLASVPINTEYAIFELST----------SSPGGLQKLVKILPLNIAV 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267
            TN+   H ++  + +    AK  +F  L+ K   A+I +D  +  + ++  +  G   V
Sbjct: 187 LTNINSAHTEFFNSLEHLTEAKCEIFNGLVNK-GIAVINSDSMFYTKQLEYINKLGINNV 245

Query: 268 LSVGYQGKFIHLKKVCAIHN--------KQQVTISVEGKDFDFLFPLPGEFQVYN---AL 316
            + G      H +    I N        K  + IS  G D+ F   + G  Q +N    +
Sbjct: 246 FTFG-----THQEANSNITNYYYDADNQKSVINISCNGYDWQFNTQILGYGQAFNIAAVM 300

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + + +C    I+   V E +  L    GR          G+IY+   H+++S 
Sbjct: 301 LVSNIC---KINLNKVTEVINTLRNYEGR----------GKIYLLNFHSNSSF 340


>gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
 gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
          Length = 481

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 157/374 (41%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A  A  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAADAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 460

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 98/489 (20%), Positives = 193/489 (39%), Gaps = 82/489 (16%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  DF  L N L+    Q   + +  +++D+R I +G +F+A+ G   DGH FI QA  
Sbjct: 1   MIPMDFDWLANVLAT-DYQGDNQPVLNINTDTRSICSGEVFLALKGPNFDGHKFIAQAKQ 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  ++V     +         + P  +V +TR  L +    +  +     +A+TG+ G
Sbjct: 60  NGAIGVIVQHKVDV---------DIPQFIVADTRLALGIIGGAVMAQVAPKTIAITGSVG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    V+++C  + + S      +T  +F  +N +  P                +T +
Sbjct: 111 KTT----VKEMC--AAILSVHGDVLATKGNF--NNDIGVP----------------LTLL 146

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLG-----------------RDHIDYHQTQQAYFN 228
            +E       QHR   I+L A     +                    H++   +      
Sbjct: 147 RLEP------QHRFAVIELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAK 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHN 287
           AK  +F+  L  +  AI+  D  +S+  + +    G +V       K  I  + +    N
Sbjct: 201 AKGEIFDG-LKDDGVAIVNCDSEFSQYWLDKLD--GRKVTRFSSSEKLDIWAENISLDEN 257

Query: 288 -KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   T+  +         LPG+  + NAL+AA L     +    +   L  +  V GR 
Sbjct: 258 ARASFTLCTKNAQIPVKLALPGKHNISNALIAAALTSEFDVTLEDIANALATMGDVKGRV 317

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG--GDRDQGKRPIMGK 404
             +  +     +   Y     S++  +  +  +   RI+ +   G  G+  +     +G+
Sbjct: 318 NLINVSDLLTVVDDTYNANVKSVKAAIDLLSDMQGHRILALGDMGELGEEARQYHQEVGE 377

Query: 405 IAL-----DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLN 457
            AL     +L  + +++             A  ++G+P   F  +   ++ I+T+I+ ++
Sbjct: 378 YALEQGINELFTLGVLSR-----------YASDVYGLPNRHFSNREQMLQQIQTSIKKVD 426

Query: 458 KQDVLVVAG 466
           K+  +VV G
Sbjct: 427 KKTTIVVKG 435


>gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 456

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 12  PELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           P   ++L++ P+  R    +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+G
Sbjct: 4   PMTFSELTV-PLDARLVGGDCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGK 126
           A   +V              +  P LVV +TRK L+ L A    G     + AVTG+SGK
Sbjct: 63  AVGALVEHEVE--------GAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 127 SSVASFVQQICQRSG 141
           ++V   +  I +  G
Sbjct: 115 TTVKEMLASILRTRG 129


>gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 459

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 13/118 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  VS+DSR   +  +F A+ G   D H ++ +A+ QG  A VV             
Sbjct: 22  ELTVENVSTDSRQSISKGLFFALKGEHFDAHHYLDKAVEQGCIAAVVER----------- 70

Query: 87  RSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           ++N+PI  LVV +TR  L   A  L  K     +A+TG+SGK+++      I Q+S +
Sbjct: 71  QTNSPIAQLVVKDTRLALGQLAKWLREKINPKTVAMTGSSGKTTIKEMTAAILQQSAV 128


>gi|206901118|ref|YP_002250970.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
 gi|254765999|sp|B5YEL2|MURC_DICT6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206740221|gb|ACI19279.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
          Length = 464

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 23/189 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+DY++  +   +  +++ E++ P++   ++  D    ++++ +  +   +  +
Sbjct: 178 TNIDNDHLDYYENIENIKSTFLKVIEKV-PEDGYVLLNLDCKNIRDIIGKIKDK--KYYT 234

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAA 319
            G+           A      + ++  G +FD  F           +PG   + N+L A 
Sbjct: 235 YGFSN---------ADFTADNIVLNSSGSEFDVYFRNVKLGRVKLKVPGRHNILNSLSAI 285

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+   +G+D    ++ LEK H V  R +F G       ++ DY H    +   L+ +R +
Sbjct: 286 GISYILGLDFEQTIKALEKFHGVQRRIQFKGVIENDVLVFDDYGHHPTEILATLETLR-L 344

Query: 380 TSGRIIVVF 388
            + R++VVF
Sbjct: 345 YNRRLVVVF 353


>gi|114321341|ref|YP_743024.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311123|sp|Q0A6K3|MURC_ALHEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114227735|gb|ABI57534.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 479

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 136/334 (40%), Gaps = 48/334 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+A+VVSSA    +          I VV        L   R YG      +AV GT G
Sbjct: 77  QGADAVVVSSAVQADNPEVQAAREYRIPVVRRAEMLAELMRFR-YG------IAVAGTHG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL      PT  I       RL + +      +  YL ++     
Sbjct: 130 KTTTTSLVASVLAEGGLD-----PTYVIG-----GRLNSSASHARLGSGRYLVAE----- 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKES 242
           + E+ +  L       +K +    TN+  DH+   +T    F+     F+E L   P   
Sbjct: 175 ADESDASFLH------LKPMMAVVTNIDADHL---ETYGGDFDQLRHTFDEFLHHLPFYG 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD   +++         +V S G+  +   L+ V    + ++   +V   D + 
Sbjct: 226 LAVLCHDDPVLRDL---GPEIARQVRSYGF-AEDADLRAVDIEQSGRRTRFTV--VDGEA 279

Query: 303 LFP----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GR 357
            FP    LPG   V NAL A  +   + +D A +   L++   +  RF+  GT   G  R
Sbjct: 280 TFPVEVNLPGRHNVQNALAAIAVARELHVDVAAIQRALQRFQGIGRRFQDHGTLRFGDAR 339

Query: 358 IYV--DYAHTSNSLEMILKNIRTITSG-RIIVVF 388
           + +  DY H    +   L+ +R    G R++VVF
Sbjct: 340 VTLVDDYGHHPREIAATLRAVRDGWPGRRVLVVF 373


>gi|292655246|ref|YP_003535143.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Haloferax volcanii DS2]
 gi|291370736|gb|ADE02963.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Haloferax volcanii DS2]
          Length = 838

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 131/344 (38%), Gaps = 53/344 (15%)

Query: 120 VTGTSGKSSVASFVQQICQRSG-------------------LSSFQIGPTSTISSFAQD- 159
           V G++GK S A  V  + + SG                   +   +I P S +S+F  + 
Sbjct: 44  VAGSNGKGSTARMVDAMLRESGAHVGLYTSPHFDDVRERVRVDGRKI-PKSALSAFVAEA 102

Query: 160 -----NRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                 R     P+       A AL Y    GV  V+V     G +      +  +A + 
Sbjct: 103 KPYLVERAADGEPLTFFETVTALALWYFDRAGV-DVAVLEVGMGGELDATSAVDPVASAV 161

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H        A   AK +    + P ++P +       + E +         VL+
Sbjct: 162 TNVSLEHTAVLGDTVAEI-AKTKA--AVAPADAPLVT----GTTGEALSVIREEAGDVLT 214

Query: 270 VGYQGKFIHLKKVCAI-----HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           VG            +      H +  VT+  + +  D   PL G +Q  NA +A  L   
Sbjct: 215 VGDADADSDADVRVSYGGRVNHQEAAVTVETDAETLDVRIPLLGAYQARNAGIAVSLARQ 274

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   ID+  +   L   H  PGRFE +GT      + +D AH  ++   +   +      
Sbjct: 275 VRPDIDAEAIHRGLRNAH-WPGRFEVMGTEP---TVVLDGAHNPDACAQVATVLDEFDYD 330

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + +V+G   D+D G+  ++G +  ++A +     D  R EDPE
Sbjct: 331 DLHLVYGAMHDKDHGE--MVGALP-EVASVVTCKADISRGEDPE 371


>gi|187777470|ref|ZP_02993943.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
 gi|187774398|gb|EDU38200.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 129/327 (39%), Gaps = 61/327 (18%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           ++A I S+ P  +++   K + L     F   L   +  N+ A++GT GK++  S +  +
Sbjct: 75  YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNV-AISGTHGKTTTTSMLSHV 132

Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             ++      + PT  +         N     S  ++ +A  Y SS              
Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174

Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                   +K     G   N+  DH+DY++      NA  + F +L+PK+   I Y +D 
Sbjct: 175 --------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLIAYGEDK 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCA----IHNKQQVTISVEGKDFD 301
             + ++K A+   C V++ G     I        +K C     + NKQ++        F 
Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGSFDVVKNKQKL--------FS 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG+  + N+L +  + +A  + +  ++E +E       RFE  G  +    I  D
Sbjct: 275 VKLNVPGKHNILNSLASICIGLASNMKNEDIIEGIESFFGTHRRFELKGCKNNITVI-DD 333

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVF 388
           YAH    +   L   +     ++  VF
Sbjct: 334 YAHHPTEISATLDAAKKYPHNKMFCVF 360


>gi|329940199|ref|ZP_08289481.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
 gi|329301025|gb|EGG44921.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
          Length = 462

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 36/225 (16%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKR------------AHNAG 264
           H    A  +     FE    +  P    ++ AD   ++E+ +R            A +A 
Sbjct: 190 HHANYASMDEIYESFETFAGRVVPGGTLVVSADHEGARELTRRLAKTVRTVTYGAAEDAD 249

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            RVLSV   G               +VT+ ++G    F   +PG    +NA+ A     A
Sbjct: 250 VRVLSVVPHGL------------TSEVTVELDGAPLTFTVSVPGRHYAHNAVAALVAGRA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           +GI +A +   L     V  R +  G    GG   VD YAH    +   L+ +R+ T GR
Sbjct: 298 LGIPAAELAPALAAYTGVKRRLQLKG--EAGGVQVVDSYAHHPTEMTADLEAMRSGTRGR 355

Query: 384 IIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           I+VVF        ++ GK   MG+ AL LAD ++V D  P  EDP
Sbjct: 356 ILVVFQPHLFSRTQELGKE--MGE-ALALADASVVLDIYPAREDP 397


>gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 469

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 151/375 (40%), Gaps = 62/375 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  + G +FVA+ G + DGH +   A+  GA A++           AT     P ++V
Sbjct: 34  DSRKAEPGALFVALPGEQADGHDYALSAVKAGAAAVL-----------ATRPVGVPAILV 82

Query: 96  DNTRKFLSLFASRLYGKH-------PENILAVTGTSGKSSVASFVQQICQRSGL-----S 143
           D+    L+ F  RL G+H          I+A+TG++GK+S    + Q+   +G       
Sbjct: 83  DD---VLAAF-GRL-GRHLVAHTLVDTKIVAITGSAGKTSTKDLIAQLLPAAGRVVATPE 137

Query: 144 SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           SF  +IG   TIS       +  PS  YL   +  + ++G+ H+         D  R+  
Sbjct: 138 SFNNEIGLPLTIS-------MADPSTDYL---VLEMGARGIGHIR--------DLTRIAP 179

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             +     TN+G  HI     +     AK  + E  LP    A++ ADD     V+  A 
Sbjct: 180 PHI--SVVTNVGTAHIGEFGGRDKIAVAKGEIVEA-LPASGLAVLNADDPL---VLAMAA 233

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               RV S G   +         +    +   T++           L G  QV N+L AA
Sbjct: 234 RTTARVSSFGLSDEATVRATDVTVDAFGRATYTLTTPEGSAPVSLQLVGAPQVSNSLAAA 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377
            +    G+  A + + L        R+    +    G   V+ A+ +N  S+   L+ + 
Sbjct: 294 AVAREAGLSVADIADLLSA-ATARSRWRMEVSARADGVTVVNDAYNANPDSMRSSLEALA 352

Query: 378 TITSG---RIIVVFG 389
           T+  G   R I V G
Sbjct: 353 TMARGPEQRAIAVLG 367


>gi|282854257|ref|ZP_06263594.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|282583710|gb|EFB89090.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|314923244|gb|EFS87075.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL001PA1]
 gi|314967011|gb|EFT11110.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA2]
 gi|314980967|gb|EFT25061.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA3]
 gi|315091698|gb|EFT63674.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA4]
 gi|315093068|gb|EFT65044.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL060PA1]
 gi|327327831|gb|EGE69607.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL103PA1]
          Length = 471

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L   L   R   + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRAVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGEMVH 415


>gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. 83/13]
 gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
 gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
          Length = 481

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHIVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
 gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
          Length = 461

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 150/366 (40%), Gaps = 32/366 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S D+R +  G +F+A+ G+  DGH  I  A+ +GA A++  SA  L D        
Sbjct: 26  VTGISIDTRSLAPGDLFIALKGDNSDGHAHIATALEKGAAAVLAHSAEGLTDPR------ 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             IL+V +T   L   A     +    ++AVTG+ GK++    ++     SGL+      
Sbjct: 80  --ILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGKTTTKEMLRLCLAPSGLTH----- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               +  + +N      P+ LA+ L   ++  ++ + +      L   ++  ++      
Sbjct: 133 ---AAEASYNNHWGV--PLTLAR-LPREAAFCISEIGMNHPGEILPLAKM--VQPDVAVI 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +G  H+ +  +  A    K  +    LP    AI+  DDA+       A      VL 
Sbjct: 185 TTIGSAHLGHMGSLDAIAAEKASIITA-LPAGGIAIM-PDDAHGTPFFTAAAVKAQAVLW 242

Query: 269 --SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              V  Q    HL  +    +     +S+ GK F+   P PG     NA+VA   C A+G
Sbjct: 243 PCGVNPQST-AHLSHLQTGADGSHFDVSILGKTFNVHLPAPGTHLARNAVVALAACAALG 301

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGR 383
            D A     L      PG+     T   GG I +    Y  ++ S+   L  +R I + R
Sbjct: 302 ADVAKAAAALAAFR--PGKGRGALTKIAGGAITLLDESYNASAASIRAALDVVRHIPATR 359

Query: 384 IIVVFG 389
            I V G
Sbjct: 360 RIAVLG 365


>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
 gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
          Length = 452

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 46/257 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA   Y      ++A+TG +GK++V + V ++C+ +GL +   G             
Sbjct: 100 VELFAQ--YRPTSAKLIAITGANGKTTVTTLVGEMCKSAGLKTIVAGNIGL--------- 148

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                P+     L  LS +      +E SS  L+    + +   A +  NL  DH+D + 
Sbjct: 149 -----PV-----LDTLSMETPDVYVLELSSFQLETT--NSLLADAATMLNLSEDHMDRYD 196

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR------VLSVGYQGK 275
           + Q+Y  AK  +F          ++  DDA+S  +M RA  A         V    Y  K
Sbjct: 197 SMQSYAVAKAHIFYH----AKLQVLNRDDAWSL-MMARAKLAQVTFGLDDVVAEQDYGIK 251

Query: 276 FIHLKKV--CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
            ++ +    C  H+   +      +D      + G     NAL A  LC  IG+D A ++
Sbjct: 252 QVNGETWLSCGTHDLMNI------RDLK----IAGLHNASNALAAMALCRGIGLDFAPII 301

Query: 334 EHLEKLHVVPGRFEFVG 350
           + L     +P R E+V 
Sbjct: 302 QTLYNFKGLPHRVEWVA 318


>gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
 gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
          Length = 478

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 153/389 (39%), Gaps = 30/389 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            EV  DSR +  G +FVA  G K DG+ +I  A+  GA  +  S   +        R + 
Sbjct: 27  GEVEIDSRRVGEGSLFVAFAGEKVDGNSYIDAALDAGAAVVCASVEPAQATLEHARRVDA 86

Query: 91  PILVV--DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +L    D+  +FL   A      H +  ++AVTG+ GK++    +     R+G+++ + 
Sbjct: 87  TLLRAEGDDCEEFLLRLAGAWRALHQDWTVVAVTGSVGKTTTKDML-----RAGIATQR- 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLA--KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                 ++   +N +  P  I  A   A   +   G+ H        G         +  
Sbjct: 141 --RVHATAGNHNNLIGLPMTILSAPKDAEVLVCECGMNH-------KGEILRLTRCCRPT 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPAIIY--ADDAYSKEVMKRAH 261
               TN+G  HI    +++    AK  + E  E      P +I     D  S    K A 
Sbjct: 192 IAVITNVGTSHIGLLGSRENIACAKAEIVEGMEAHGDIRPTLILESGGDFTSFVSEKFAR 251

Query: 262 NAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVA 318
             G  V+ VG + G  +  + V            ++ +G      F +PG   V +AL+A
Sbjct: 252 PKGIDVVCVGSHAGDILRAQDVTVGEESLPTATFVTQDGWKKTVTFSVPGRVAVSDALMA 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI- 376
                 +G+D  + L+ +  +     R   +     G RI  D Y  + +S+   L  + 
Sbjct: 312 LEAITLLGLDRDMALDAIATMPPTRMRLSVLHAVC-GARIIDDSYNASPSSMAAALDVLS 370

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           R  T GR I + G  G+  Q ++ + G +
Sbjct: 371 RMPTRGRRIAILGEIGELGQEEKRLHGYV 399


>gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 456

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 12  PELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           P   ++L++ P+  R    +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+G
Sbjct: 4   PMTFSELTV-PLDARLVGGDCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGK 126
           A   +V              +  P LVV +TRK L+ L A    G     + AVTG+SGK
Sbjct: 63  AVGALVEHEVE--------GAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 127 SSVASFVQQICQRSG 141
           ++V   +  I +  G
Sbjct: 115 TTVKEMLASILRTRG 129


>gi|126172655|ref|YP_001048804.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|152998953|ref|YP_001364634.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS185]
 gi|160873539|ref|YP_001552855.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS195]
 gi|217971634|ref|YP_002356385.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS223]
 gi|304411642|ref|ZP_07393254.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|307306306|ref|ZP_07586051.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|166224727|sp|A3CZM2|MURC_SHEB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224728|sp|A6WID2|MURC_SHEB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082498|sp|A9KY30|MURC_SHEB9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766021|sp|B8E699|MURC_SHEB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125995860|gb|ABN59935.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|151363571|gb|ABS06571.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS185]
 gi|160859061|gb|ABX47595.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS195]
 gi|217496769|gb|ACK44962.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS223]
 gi|304349830|gb|EFM14236.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|306911179|gb|EFN41606.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|315265769|gb|ADT92622.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS678]
          Length = 488

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 116/274 (42%), Gaps = 47/274 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  +  ++G   +F IG    ++S   + RL T S   +A+A   
Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADES 179

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH+D +        +   
Sbjct: 180 DASFLHLQPMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFV 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-- 290
            F   LP    A++  DDA  +E+M R    G ++++ G+         V A++  QQ  
Sbjct: 217 DFLHNLPFYGVAVVCIDDAVVREIMPRI---GRQLVTYGFSDD----ADVQALNFSQQGH 269

Query: 291 ---VTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               T+  +GK D D +  LPG+  V NAL A  +     ID + + + L +   +  RF
Sbjct: 270 QCRFTVRRKGKADLDLVLNLPGQHNVLNALAAIAVATEDEIDDSAITQALVEFQGIGRRF 329

Query: 347 EFVG--TNSRGGRIYV-DYAHTSNSLEMILKNIR 377
           + +G     +G  + V DY H  + +   +K  R
Sbjct: 330 QHLGKFATPKGEVMLVDDYGHHPSEVAATIKAAR 363


>gi|168177452|ref|ZP_02612116.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916]
 gi|182670399|gb|EDT82373.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916]
          Length = 873

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 148/359 (41%), Gaps = 51/359 (14%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +S  ++G T+T   +  +  +          A + L+++ V    +E +  GL +  L  
Sbjct: 501 ISGKKVGMTTTGGIYINNKCINNGDTTGYYSAKTVLTNKEVEVAVLELARGGLIKAGLPY 560

Query: 202 IKLIAGSFTNLGRDHI---DYHQTQQ-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH+   D +  +  AY  A   L  E + K+   +I ADD  S  ++
Sbjct: 561 DLADVGIITNVTEDHLGLGDINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASINII 617

Query: 258 KRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            R  +                    + L +   G  I+LKK+    NK +  I+V     
Sbjct: 618 NRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN---- 669

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355
                L G+  + V NA+ A    IA+GID   + + LE        PGRF     N  G
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGIDVNTIRQGLESFSNEEQNPGRFNMY--NVHG 727

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   +
Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIYI 787

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464
            +D  +    +   A+++    G +E G          +  EA++ AIE  N  D++++
Sbjct: 788 KEDRDKRGRKDGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVIM 844


>gi|258654054|ref|YP_003203210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
 gi|258557279|gb|ACV80221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
          Length = 510

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 158/378 (41%), Gaps = 49/378 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  D+R I+ G +FVA+ G + DGH F   A A GA A++          SA + + 
Sbjct: 26  VSSVEFDTRRIRPGALFVALRGERVDGHDFAATAAAAGAVAVL---------GSAPVSAP 76

Query: 90  TPILVV----DNTRKFLSLFA------SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P+L V    DN     +L A      + L  +H   ++ VTG+SGK+S    +  + + 
Sbjct: 77  LPLLQVPDRPDNAGVLDALAALARASVTALVREHGLQVVGVTGSSGKTSTKDLIAAVLR- 135

Query: 140 SGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +    GP   I+   SF  +N L  P   Y A      ++  V  +S   + H    
Sbjct: 136 ---AVPGTGPERVIAPPESF--NNELGHP---YTALRADESTAFLVLELSARGAGHIAAL 187

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------AIIYADD 250
            R+  +++  G+  N+G  H+    + +A   AK  L + L P  +       AI+ ADD
Sbjct: 188 ARVAPLRI--GAVLNVGSAHLGEFGSVEAIAQAKSELVQSLPPAGAQPLTGGVAILNADD 245

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLP 307
           A    V   A      V+ VG  G    ++         ++ + T+            + 
Sbjct: 246 AL---VAAMAELTAAEVVMVGT-GAAAQVRATDVGQDDADRARFTLVTPEGSAPVTLRVV 301

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G  Q+ NAL AA +  A+G+    +   L +      R+    T    G   ++ A+ +N
Sbjct: 302 GAHQIGNALTAAAVGRAVGLGPQAIARALSQAEPA-SRWRMEVTELANGVTLINDAYNAN 360

Query: 368 --SLEMILKNIRTITSGR 383
             S++  L ++ TI  GR
Sbjct: 361 PHSMKAALHSLSTIGRGR 378


>gi|168187029|ref|ZP_02621664.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
 gi|169295057|gb|EDS77190.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
          Length = 458

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 132/340 (38%), Gaps = 51/340 (15%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPEN 116
           +GAE  +     +L++     ++A I SN P LV        ++  +   G     H  N
Sbjct: 54  KGAEIYIGHDGNNLKNVDLVVYTAAIPSNNPELVKARELNIPTMDRAEFLGHVMQGHKYN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + A++GT GK++  S +  I   + L      PT  +         N     S  ++ +A
Sbjct: 114 V-AISGTHGKTTTTSMLSHITLSANLD-----PTILVGGNLDVINGNVRVGNSEYFVTEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y +S              L  +   GI L      N+  DH+D+++      N  ++ 
Sbjct: 168 CEYKASF-------------LKFYPYVGIIL------NIEADHLDFYKDINDIQNTFLK- 207

Query: 234 FEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           F +L+P +   I+ ADD    A SKEV        C V++ G     +  K +   +   
Sbjct: 208 FAKLIPSDGFLIVNADDERCIAVSKEV-------DCNVITFGIDNGEVRAKNIVFTNGHP 260

Query: 290 QVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +   E K F     +PG   + +AL +    +++ +    ++E L   +    RFE 
Sbjct: 261 TFDVCKNEEKLFTLTLNVPGTHNILDALASISSALSLNVPVNSIIEGLSTFNGAHRRFEI 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            G    G  +  DYAH    ++  L   +     RI  VF
Sbjct: 321 KGK-VDGITVVDDYAHHPTEIKAALNAAKNFPHKRIFCVF 359


>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
 gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
          Length = 492

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 34/169 (20%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA+  + K  + I AVTGT+GKS+V +F  QI Q++G+ +F  G   T  S A       
Sbjct: 118 FAAEAFPKAVK-IAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFMF 176

Query: 165 PS--PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-------NLGRD 215
           PS  P Y    L             E SS+ L+         + GSF+       NL  D
Sbjct: 177 PSDDPPYQVTVL-------------EVSSYQLE---------LPGSFSPSVGVILNLSPD 214

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           H++ H++ + Y   K RLFE +   +   I + D+   K   K  +N+G
Sbjct: 215 HLERHKSMENYGETKCRLFERMDSSKLSIIPHGDEFLRKVAYK--YNSG 261


>gi|188589349|ref|YP_001919591.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum E3
           str. Alaska E43]
 gi|229486481|sp|B2UXS3|MURC_CLOBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188499630|gb|ACD52766.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 460

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 131/349 (37%), Gaps = 68/349 (19%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVV--DNTRKFLSL--FASRLYGKHPEN 116
            GA+  +  S  +++D     ++A I  N P L+   +N    ++   F   +   H  N
Sbjct: 54  SGADIYIGHSEKNIKDVDLVVYTAAIPENNPELIYAKENNIDLMNRAEFLGNIMKGHKYN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS--------------SFQIGPTSTISSFAQDNRL 162
           + A++G  GK++  S +  I  ++ L               +F+IG +         +  
Sbjct: 114 V-AISGAHGKTTCTSMLSNITLKANLDPTILVGGELDIIGGNFRIGSS---------DYF 163

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T +  Y    LS+    GV                            N+  DH+DY++ 
Sbjct: 164 ITEACEYKRSFLSFFPYVGV--------------------------ILNIDADHLDYYKD 197

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                      F +L+P +   I Y  D+  KE++ +A    C  LS G++   +  + +
Sbjct: 198 IDE-ITETFGQFADLIPNDGYLIGYIGDSRVKEILSKAK---CNTLSYGFENADVTARNI 253

Query: 283 CAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              + K   +  V     K FD     PGE  + NAL +  + +   ++   ++  L + 
Sbjct: 254 -TFNEKGCASFDVYKHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLSEC 312

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                RFE+ G    G  +  DYAH    ++  L   + I   +   VF
Sbjct: 313 KGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVF 360


>gi|326388919|ref|ZP_08210501.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206519|gb|EGD57354.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 474

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 112/283 (39%), Gaps = 34/283 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +N +AV GT GK++  S V  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KNTVAVAGTHGKTTTTSMVACLLDAGGIDPTVIN-GGIINSYGSNARLGDSDWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   +    TN+  +H+D++ +      A    F
Sbjct: 162 ------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHYGSFD-RVKAAFVEF 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
            E +P    A++  D    + ++    +   RV++ G+  +  +  + V  +    + T 
Sbjct: 206 IENVPFYGAAMLCIDHPVVQAIIPMVRDR--RVITYGFSAQSDVRGEAVIPVPGGNRFTA 263

Query: 294 SVEGKDF------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  +D       D + P+PG   V NAL A  +   +G+   ++ +   K   V  RF 
Sbjct: 264 VLRQRDGTFHRIEDIVLPMPGRHNVQNALAAIAVAREMGVADDVIRDGFAKFGGVKRRFT 323

Query: 348 FVG-TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
            VG     GG + V  DY H    +  +L   R    GR+I V
Sbjct: 324 KVGEIEVDGGLVTVIDDYGHHPVEIRAVLAAAREGARGRVIAV 366


>gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 456

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 9/110 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR IQ G +FVA+ G + DGH ++ Q  A+GA   +V              ++ P 
Sbjct: 28  VSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQ--------GASLPQ 79

Query: 93  LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+ L A        + + A+TG+SGK++V   +  I +  G
Sbjct: 80  LVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRG 129


>gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 456

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 9/110 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR IQ G +FVA+ G + DGH ++ Q  A+GA   +V              ++ P 
Sbjct: 28  VSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQ--------GASLPQ 79

Query: 93  LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+ L A        + + A+TG+SGK++V   +  I +  G
Sbjct: 80  LVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRG 129


>gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
 gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
          Length = 449

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 158/373 (42%), Gaps = 49/373 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q         G  
Sbjct: 75  KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + ++G    ++S A D    T   I+           G+ H        G  +  +  +K
Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHN 262
                 TN+   H+++  + +    AK  +F     K   A+I AD + Y+K +    + 
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFP-LPGEF-QVYNALVA 318
           +   + S G   K    + +   +  +QV +   +  K  D   P +P  F + Y  ++ 
Sbjct: 234 SITDIHSFGRSAK-TSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVL- 291

Query: 319 AGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNI 376
             L I I G D  +   HL  +    GR E +  N +  R+  DY + S  S++  L+ +
Sbjct: 292 --LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNASPQSMKAALEYL 347

Query: 377 RTITSGRIIVVFG 389
           + + +     + G
Sbjct: 348 KQVPAENKTAIIG 360


>gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
 gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
          Length = 464

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 142/345 (41%), Gaps = 39/345 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +Q G IF+A+ G + DGH F+ QA A GA   V                    L+V
Sbjct: 38  DSRALQPGDIFLALQGAR-DGHDFVAQAFASGAVLAVTRRPIE----------GGACLLV 86

Query: 96  DNTRKFLSLFASRLYGKHPENILA-VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            + +K L   A     + P+     VTG+ GK+SV   V Q  Q++G +       S I 
Sbjct: 87  PDVQKALEDIAVFARNRAPQTRRGGVTGSVGKTSVTQMVMQGLQQAGRAH------SAIK 140

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQ----GVTHV-SVEASSHGLDQHRLDGIKLIAGSF 209
           SF  +N +  P  + LA+  +         G+ H   +   S  +  H +          
Sbjct: 141 SF--NNHIGVP--LTLARMPADTERAVFEIGMNHADEITPLSEFVAPHAV--------VI 188

Query: 210 TNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           T +G  H + +   +     AK  +F+ L+P    AI+ AD+ +   +  +A  +G  V 
Sbjct: 189 TTVGAVHTENFPDGEAGVAAAKAEIFDGLVPG-GLAILNADNRWFDHLSTKARGSGALVA 247

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G  G     L +     ++  V     G+D  F     G  Q  NAL A  +  A+ +
Sbjct: 248 AFGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFSLSHTGRHQAVNALAALLMLEALDV 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEM 371
           D    L  LE    + GR   +    +GG +  +D ++ +N + M
Sbjct: 308 DLDTSLLALESFATLEGRGRVITKPFKGGELTIIDESYNANPVSM 352


>gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 15/120 (12%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR I  G +F+AI G + DGH ++P   AQGA A +V   + + D      ++ P +V
Sbjct: 34  TDSRQIVEGSVFIAIAGERVDGHDYVPHVGAQGAVAAIVD--HEIAD------ADVPQIV 85

Query: 95  VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           V++T   L L A       R  G  P  ++ +TG+ GK++    ++ +    G +   +G
Sbjct: 86  VEDTVLALGLLAKHNIERRRALGT-PFTVVGITGSVGKTTTKDLMKALLSHMGSTVAPVG 144


>gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 456

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 9/110 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR IQ G +FVA+ G + DGH ++ Q  A+GA   +V              ++ P 
Sbjct: 28  VSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQ--------GASLPQ 79

Query: 93  LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+ L A        + + A+TG+SGK++V   +  I +  G
Sbjct: 80  LVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRG 129


>gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 455

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 36/343 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S D+R IQ G +FV   G + +GH F+ QA  +GA A +       Q         
Sbjct: 24  VSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKGAGASL------WQKDEPNPPEG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L VD+    L   A     +H    + +TG++GK+S     + I   +    F++  
Sbjct: 78  IPLLFVDDPEVALQEMARAYRNEHKAKFIGITGSNGKTS----TKDILAGTLAPFFKV-- 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             TI +F  +N+L  P  I     L       V  + +  S  G  +      +      
Sbjct: 132 QKTIGNF--NNQLGLPITI-----LQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPHMTVI 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKE-VMKRAHNAGCRV 267
           TN+G  H+    ++     AK  + + + P     + Y  D+   +E V K  H      
Sbjct: 185 TNIGEAHMQDLGSRAGIAQAKFEIIQGMQP--DGLLFYDGDEPLLQELVAKEMH---LNA 239

Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           ++ G +    ++   + A  N    T    +EG   DF   + G+ QV N LVA  +   
Sbjct: 240 VAFGLEPNNLLYADHIHANANGSSFTTHGMIEG---DFFISVLGKHQVKNTLVAMLISHQ 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTS 366
           +G+ +  +   LE + +   R + V GTN   G ++++ A+ +
Sbjct: 297 LGLKNEQIRTSLEHVVLTDMRMQQVQGTN---GALFINDAYNA 336


>gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 456

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 9/110 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR IQ G +FVA+ G + DGH ++ Q  A+GA   +V              ++ P 
Sbjct: 28  VSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQ--------GASLPQ 79

Query: 93  LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+ L A        + + A+TG+SGK++V   +  I +  G
Sbjct: 80  LVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRG 129


>gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
 gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
          Length = 475

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 31/368 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIR 87
           I  VS+D+R + AG +++ + G   DGH F+  A+ +GA  ++V    A+ L+  S    
Sbjct: 31  IRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAVKKGAGGVLVDVHHAFILETGSKKTD 90

Query: 88  SNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               ILV D  +    L+ F  R  G+    ++A+TG+SGK++       I +++     
Sbjct: 91  GCLKILVDDTLKALGDLARFWRRAVGR---PVIAITGSSGKTTTKEMTAAILEQT----- 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                S + +    N L    P+ L   L       +  V +  ++ G  +   +  +  
Sbjct: 143 ----FSVLKTEGNLNNL-IGLPLTL---LRMHRGHDLALVELGTNARGEIKRLTEIAEPD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  H++  +T +     K  L+   +PK   A+  ADD  +   ++R+     
Sbjct: 195 IGLVTNIGPAHLEGLKTLEIIREEKGDLYGT-MPKSGLAVFNADDE-AMAPLRRSWQGKM 252

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
               +  +             + Q  T++   +         G   +YNAL AA L  A 
Sbjct: 253 LTYGITSRADMTASDIAKWGESGQSFTLNAGSESTVVHLSAFGMHNIYNALAAAALSRAA 312

Query: 326 GIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITS 381
           GI    + + L   H V  RFE  F+      G   VD  + +N  S+   LK I+T+  
Sbjct: 313 GIGINEISQGLRNFHPVAARFEVHFLPN----GAFLVDDTYNANPASVREALKTIQTLKG 368

Query: 382 G-RIIVVF 388
             R +VV 
Sbjct: 369 NHRSVVVL 376


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88
           +N +S DSR I     F AI G   DGH FI  A+ +GA  +VV++     D  A+I S 
Sbjct: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P+  VD+    L+  A     +    I+A+TG+ GK++    +        LSS +  
Sbjct: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
             + I S+  +N +    P+ LA+            V V+     L    L  I+ +   
Sbjct: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181

Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +   H+      +   +AK  +FE  L K     +  DD++ + +  ++H
Sbjct: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240

Query: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             G + + S G  +     L+K      +  + + ++GK  + +    G     N L+  
Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373
           G+   +  D    ++ L   H   GR + +    ++G    +D ++ +N   M     +L
Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360

Query: 374 KNIRTITSGRIIVVFG 389
             I     GR I V G
Sbjct: 361 SQISPHGEGRRIAVLG 376


>gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 456

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 13/127 (10%)

Query: 20  IFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + P+  R    +   + VS+DSR IQ G +FVA+ G + DGH ++ Q  A+GA   +V  
Sbjct: 11  VVPLDARLVAGDCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVER 70

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                       ++ P LVV +TRK L+ L A        + + A+TG+SGK++V   + 
Sbjct: 71  EVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLA 122

Query: 135 QICQRSG 141
            I +  G
Sbjct: 123 SILRTRG 129


>gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris RCH1]
          Length = 478

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTP 91
           V SDSR +  G +FV I G + DGH F    + QGA  ++         F+    S +  
Sbjct: 29  VRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQGARVLIAER----DPFNGECPSADVT 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           I+VVD++ K L   A+    +    ++ VTGT+GK++V   + Q+
Sbjct: 85  IMVVDDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVKELLAQV 129


>gi|319791816|ref|YP_004153456.1| cyanophycin synthetase [Variovorax paradoxus EPS]
 gi|315594279|gb|ADU35345.1| cyanophycin synthetase [Variovorax paradoxus EPS]
          Length = 855

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 146/365 (40%), Gaps = 48/365 (13%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA    G+ P  ++AVTGT+GK++ A  +  +   SGL +   G T+T   +  D R 
Sbjct: 459 TMFAHGDDGRIP--VVAVTGTNGKTTTARLINHLLASSGLRT---GMTNTDGVYV-DGRQ 512

Query: 163 TTPSPIYLAK-ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--D 218
           T        K A + L    V     E +  G+ +  L   +      TN+G  DH+  +
Sbjct: 513 TDSGDCSGPKSARNVLMHPDVDAAVFEVARGGVLREGLGFDRCQVAVVTNIGSGDHLGLN 572

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y  T +     K R+    +  +  A++ A D     V   A  AGC    + +    +H
Sbjct: 573 YITTVEDLAVLK-RVIVRNVAADGYAVLNAAD-----VNVAAMAAGCPGHVIFFTADRMH 626

Query: 279 LKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGE-------------------FQVYNALVA 318
              V A H  Q + T+ V   D D L    G                    FQV N + +
Sbjct: 627 --PVMATHRAQGKRTVYV---DQDTLVAAEGSWRERIPLRDVPITRNGTIGFQVDNVMAS 681

Query: 319 AGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
                A+G+D   +   L         VPGRF  +  + RG  +  DY H ++++  ++ 
Sbjct: 682 VAAAWAVGLDWDTIRSGLASFMNDAAGVPGRFNVM--DYRGATVIADYGHNTDAMRALVS 739

Query: 375 NIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            + T+ +  R +V+ G G  RD   R     +     D+ +  D   R     ++ A + 
Sbjct: 740 AVDTMPANKRSVVISGAGDRRDSDIRDQTAILGEAFDDVILYQDAAQRGRADGEVMALLR 799

Query: 434 HGIPG 438
            G+ G
Sbjct: 800 QGLQG 804


>gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
 gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
          Length = 477

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 143/363 (39%), Gaps = 60/363 (16%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E     VS D+R I  G +FVA+  +  DGH F+ QA+ QGA A +V+         A 
Sbjct: 20  QEWDAQGVSIDTRTIAQGDLFVAL-KDVRDGHEFVAQALDQGAAAALVTH------RPAD 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL--- 142
           + ++ P+L+V +    L         +    I A+TG+ GK+S    ++ + ++ G    
Sbjct: 73  VPADAPLLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKTSTKEMLRAVLEKQGKCHA 132

Query: 143 --SSF--QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             +S+    G   T++    D         ++ P  I     LS ++   V  ++  A++
Sbjct: 133 AEASYNNHWGVPLTLARMPADADYAVIEIGMSNPGEI---TPLSQMTQPHVAMLTTVAAA 189

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H               SF NL    ++           K  + + L P    A++  D  
Sbjct: 190 H-------------LASFDNLAGIAVE-----------KASIMDGLEPG-GVAVLNGDIE 224

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            S  +   A   G R +  G       +K V    +   ++ S  G+++ F   +PG   
Sbjct: 225 TSGILQDHAAKLGARQVLFGETAPDWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHF 284

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369
             NA+    +  A+G D   V   L+    VP          RG R  I  D A+   SL
Sbjct: 285 AMNAVGVLAVAEALGADP--VAAALDIGAWVP-------PAGRGTREVIVTDMANDGESL 335

Query: 370 EMI 372
           E++
Sbjct: 336 ELL 338


>gi|294828013|ref|NP_712232.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|293385859|gb|AAN49250.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 488

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 121/305 (39%), Gaps = 52/305 (17%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFE--------------------------ELL---- 238
            TN+  DH+DY+QT++   NA +R  E                          ++L    
Sbjct: 181 LTNVDEDHLDYYQTRENLLNAFVRYMEGASRRLILNLDDIGIRDSIKLIHDHSKILGFSK 240

Query: 239 ---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQV 291
              P E  + +  +   SK+ +K +  AG    S    G    K ++      I     +
Sbjct: 241 YKNPDEFTSGLSRNSEKSKDDLKNSDIAGAEKTSKVLYGIDPDKIVYYTIQSGI-----L 295

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               + K++ F    PGE  + NAL A   C   GI  + ++  + +   V  R E++G+
Sbjct: 296 YFYFQKKEYSFSLKYPGEHYLKNALAAILACFETGIPLSDLVSKISEYSGVNRRLEYLGS 355

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA--LD 408
            + G  +Y DY H    ++ +++++  +   GR +++F     R    + +  + A  LD
Sbjct: 356 KN-GIEVYDDYGHHPTEIKAVIQSMEELKKEGRAVILFQP--HRYTRTQNLYKEFAESLD 412

Query: 409 LADIAIVTDDNPRSEDP-EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +I  +       EDP   ++AE+I      P  I      E I T    L   D LV 
Sbjct: 413 SGEIVFLLPIYSAGEDPIYGVKAELISDFMKFPAKILPKEISEGIFTLKSFLKPGDKLVT 472

Query: 465 AGKGH 469
            G G+
Sbjct: 473 LGAGN 477


>gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V              +  P 
Sbjct: 24  VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 75

Query: 93  LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+   +     +   P  + AVTG+SGK++V   +  I +  G
Sbjct: 76  LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 125


>gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 456

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 12  PELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           P   ++L++ P+  R    +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+G
Sbjct: 4   PMTFSELTV-PLDARLVGGDCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGK 126
           A   +V              +  P LVV +TRK L+ L A    G     + AVTG+SGK
Sbjct: 63  AVGALVEREVE--------GAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 127 SSVASFVQQICQRSG 141
           ++V   +  I +  G
Sbjct: 115 TTVKEMLASILRTRG 129


>gi|50955148|ref|YP_062436.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|59798226|sp|Q6AE65|MURC_LEIXX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50951630|gb|AAT89331.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 464

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA--GCRV 267
           TN+  DH+D++ + +A+ +A +   EE        ++ +DD  +++V +R   A  G RV
Sbjct: 183 TNVDPDHLDHYGSLEAFEDAFVAFAEE---SAELVVVSSDDPGAQQVTRRLRKAAPGKRV 239

Query: 268 LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L+ G + +   ++    + +      +S +   +     +PG     NA  A  L   +G
Sbjct: 240 LTFG-EAEDADIRVYSIVTDGPVAFALSHDSDVYSACLRVPGRHNAINAAGAFALLTGLG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRII 385
            + A  L  + +      RFE  GT + G  +Y DYAH    +   L   RT+   GRII
Sbjct: 299 FEPAASLAAIAEFGGTERRFELHGTVA-GVSVYDDYAHHPTEVAAALSAARTVVGDGRII 357

Query: 386 VV 387
            V
Sbjct: 358 AV 359


>gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 459

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 136/349 (38%), Gaps = 81/349 (23%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSAT 85
           R  + VS DSR +    +F+ + G   DGH F+ +A+ +GA A ++   Y  + +  +  
Sbjct: 24  RGFDGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQKGAVATLIDQRYPHAGEYVAWC 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSS 144
            R     + V +T + L   AS    K P  I + +TG+SGK++V    + +        
Sbjct: 84  TRFGAACIAVHDTLRALQDLASFYCKKFPALIRIGITGSSGKTTVKEMARAV-------- 135

Query: 145 FQIGPTSTISSFAQDNR-LTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                      F++  R + TP    S I L ++L ++ ++       E     L  +R 
Sbjct: 136 -----------FSERYRVVATPGNLNSEIGLPQSLFFVRAEH------EVGIFELGMNRR 178

Query: 200 DGIKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-------LLPKESPAI 245
             ++ +A          TN+G  H+    TQQA    K  +F +        +P ++  +
Sbjct: 179 GEMRTLAQILVPHYAIITNVGCAHVGILGTQQAIAEEKKEIFSQFTEHSVGFVPDDAYRV 238

Query: 246 IYADDAYSKEVM---------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             ++  Y + V+             + G R   V YQG++I +                 
Sbjct: 239 FLSNIPYGRVVVYDQGGRGLATEVIDEGLRGSRVLYQGRWIRV----------------- 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                   PLPG     NAL    L   +G+ +  +   +E++    GR
Sbjct: 282 --------PLPGVHNAKNALAVIALAAQVGLPAEEIQRGMERVKPPFGR 322


>gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
 gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
          Length = 457

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 146/360 (40%), Gaps = 42/360 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  IN++  DSR I  G +F+ + G + DGH FI  A   GA A      ++ ++  A
Sbjct: 21  YEDVAINQIEFDSRKITEGDLFLPLKGAR-DGHDFIQTAFDNGALA-----TFTEKELPA 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ILV D    F  L A  L  K   +++AVTG++GK++    +  I   +  + 
Sbjct: 75  ---DQAHILVDDALEAFQKLAAYYLE-KTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G          +N +  P   Y A  +   + + V  +      H  D H L  + K
Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSTLAK 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRA 260
                 T +G  H+++  ++      KM++ ++ +P  S  ++ +D   D +    +   
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPSDPIVDPFLPSNLDVV 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  L+V    +F           K  +T S    D     P+ G++   NA+VAA 
Sbjct: 236 RFGDGAELTVSELTEF-----------KDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAY 284

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           +   +G+    +L  L  L +   R E+    + G  I  D Y     ++++IL+    I
Sbjct: 285 VAKHLGVTEENILTALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLILETFSAI 343


>gi|301630397|ref|XP_002944308.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like
           [Xenopus (Silurana) tropicalis]
          Length = 576

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 33/158 (20%)

Query: 102 LSLFASRLYGKHPEN-----ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153
           L L++  L+  H ++     +LAVTGT+GK++V +   Q+ Q +G S   +  IGPT   
Sbjct: 174 LDLYSQALHALHTQHGYAPVVLAVTGTNGKTTVTALTGQLLQHAGRSVAVAGNIGPT--- 230

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNL 212
                           L    + +++Q +  V V E SS  LD   + G +  A    NL
Sbjct: 231 ---------------LLDTLAARIAAQNLPEVWVLELSSFQLDG--VHGFEPTAAVVLNL 273

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAII 246
            +DH+D+H    AY  AK  +F +    +L +E PA++
Sbjct: 274 TQDHLDWHGDMAAYGAAKAHIFGQHALMVLNREDPAVM 311


>gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 483

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 133/343 (38%), Gaps = 42/343 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +     SDSR    G +FVAI G + DGH F+ +   QGA   +V            +
Sbjct: 24  ESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQGATVAIVDH---------EV 74

Query: 87  RSN-TPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRS 140
           +S+  P +VV +T   L   A     +  E     +I+ +TG+ GK++    +  +    
Sbjct: 75  KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA-- 132

Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                 +GPT + + SF  +  L   +         +++  G +H+   A        RL
Sbjct: 133 -----TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RL 179

Query: 200 DGIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             I     +    +G  H+    +++    AK  + + LLP  + A++ ADD +   V+ 
Sbjct: 180 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDEH---VVP 235

Query: 259 RAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVY 313
            A  A   VL  G    Q   +    V A  +       +  +G        +PG   V 
Sbjct: 236 MAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 295

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355
           NAL AA + +  G+    V   L   H + P R      N  G
Sbjct: 296 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 338


>gi|319941793|ref|ZP_08016115.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804726|gb|EFW01593.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
          Length = 508

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 20/230 (8%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVM 257
           +   + +  N+  DH+D+H + +AY +AK R+F      ++ +E P ++    A  ++V 
Sbjct: 205 LNCTSAALLNITEDHLDWHGSIEAYAHAKGRIFAPDTVRVVNREDPLVM----AELEKVD 260

Query: 258 KRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP-------G 308
            R H+A  C         K   L  + A H  Q   + +  + + D LF LP       G
Sbjct: 261 DREHSAARCFTFGATKPQKEGELGLMMAAHASQGYWLGLRDQMEVDVLF-LPEFELLIRG 319

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NAL A GL    GI++   +  L      P R E V T    GR ++D +  +N 
Sbjct: 320 RHNAMNALAALGLITGAGIETRPAIGVLRTYRGEPHRVELVRTIE--GRDFIDDSKGTNV 377

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             +          GR I++   G  + Q   P+  ++   +A  A++  D
Sbjct: 378 GAVAAAVCGLAAQGRRILILMGGDGKGQDFTPLAKELKGRVAFAALIGRD 427


>gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 446

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR ++ G IF A  G K DGHL+I QAI++GA   V++             +N P+
Sbjct: 26  ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVITD-------ENYYDANKPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++V +T   +        GK     + +TG+ GK+S  + +  +  +
Sbjct: 79  VLVKDTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQ 125


>gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
 gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
          Length = 481

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 124/300 (41%), Gaps = 49/300 (16%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ VS D+R +  G +FVA+   + DGH F+ QA+ +GA A +VS           + +
Sbjct: 23  QVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQALGKGAGAALVSH------IPEGVAA 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS----- 143
           + P+L+V++    L         +    ++AVTG+ GK+S    ++ +  R G +     
Sbjct: 76  DAPLLIVEDVLAALEALGRAARARSEARVVAVTGSVGKTSTKEMLRTVLARQGRTHAAEA 135

Query: 144 --SFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             +   G   T++   +D +       +  P  I     L+ L+   V  V+  A++H  
Sbjct: 136 SYNNHWGVPLTLARMPRDTQFAVIEIGMNHPGEI---APLARLARPHVAMVTTVAAAH-- 190

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               L+  + I G    + R+              K  +FE L P    A++ AD   + 
Sbjct: 191 ----LEAFENIEG----IARE--------------KAAIFEGLEPG-GIAVVNADLDTTP 227

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            + + A  AG  +   G + +  HL  V    ++  +   ++G+   F     G     N
Sbjct: 228 ILEEAATRAGASIRRFGTKARDYHLDTVQITGDRTVIRAEIQGETALFKLDCAGRHFAMN 287


>gi|241762280|ref|ZP_04760361.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752697|ref|YP_003225590.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|241373183|gb|EER62813.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552060|gb|ACV75006.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 476

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 112/283 (39%), Gaps = 34/283 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AV GT GK++  S V  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGIDPTVIN-GGIINSYGSNARLGDSDWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   I    TN+  +H+D++ + +   +A +  F
Sbjct: 162 ------------VEADESDGSFLRLDGTLAI---VTNIDPEHLDHYGSFEKVQDAFVE-F 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
              +P    A +  D    + ++ R  +   R+++ G+  +  I    +  I    + T 
Sbjct: 206 VSNVPFYGAAFLCIDHPVVQSILPRIRDR--RLITYGFSAQADIRAVDITPISGGNRFTA 263

Query: 294 SVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  +D D         P+PG   + NAL A G+ +   I  A + +   +   V  RF 
Sbjct: 264 VIRSRDGDIRRIENIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFS 323

Query: 348 FVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
            VG    G G + V  DY H    ++ +L   R     R+I V
Sbjct: 324 RVGEIKIGDGSVLVIDDYGHHPVEIKAVLSAARESAQQRVIAV 366


>gi|251780203|ref|ZP_04823123.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084518|gb|EES50408.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 460

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 131/349 (37%), Gaps = 68/349 (19%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVV--DNTRKFLSL--FASRLYGKHPEN 116
            GA+  +  S  +++D     ++A I  N P L+   +N    ++   F   +   H  N
Sbjct: 54  SGADIYIGHSEKNIKDVDLVVYTAAIPENNPELIYAKENNIDLMNRAEFLGNIMKGHKYN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS--------------SFQIGPTSTISSFAQDNRL 162
           + A++G  GK++  S +  I  ++ L               +F+IG +         +  
Sbjct: 114 V-AISGAHGKTTCTSMLSNITLKANLDPTILVGGELDIIGGNFRIGSS---------DYF 163

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T +  Y    LS+    GV                            N+  DH+DY++ 
Sbjct: 164 ITEACEYKRSFLSFFPYVGV--------------------------ILNIDADHLDYYKD 197

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                      F +L+P +   I Y  D+  KE++ +A    C  LS G++   +  + +
Sbjct: 198 IDE-ITETFGQFADLIPNDGYLIGYIGDSRVKEILYKAK---CNTLSYGFENADVTARNI 253

Query: 283 CAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              + K   +  V     K FD     PGE  + NAL +  + +   ++   ++  L + 
Sbjct: 254 -TFNEKGCASFDVYKHNNKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLSEC 312

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                RFE+ G    G  +  DYAH    ++  L   + I   +   VF
Sbjct: 313 KGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVF 360


>gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
 gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
          Length = 481

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHLT 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
 gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
          Length = 462

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 30/245 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS D+R ++ G +FV +VG + DGH F+PQA+A GA  ++ + A            +
Sbjct: 25  VSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAVANGAAGVLAARAV-----------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P ++V +T K L         + P+    AVTG+ GK+SV   ++   + +G +     
Sbjct: 73  APAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKTSVTRAIEAGLRLAGKAH---- 128

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAG 207
             +++ S+  +N +    P+ LA+ +   + + V  V +   +H  +   L G ++  A 
Sbjct: 129 --ASVKSY--NNHIGV--PLTLAR-MPRDTERAVFEVGM---NHAGEIVPLSGFVRPHAV 178

Query: 208 SFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           + T +G  HI+ +   +     AK  +   L P    A++ AD+ +   +   A   G  
Sbjct: 179 AITTVGPVHIENFSDGEAGVARAKAEILAGLQPG-GIAVLNADNHWFDFLKGEAEKVGAT 237

Query: 267 VLSVG 271
           V S G
Sbjct: 238 VWSFG 242


>gi|171462985|ref|YP_001797098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192523|gb|ACB43484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 540

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 12/133 (9%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           LS  A      +   +LA+TGT+GK++ A+   Q+C+R+G    ++     IS  A +  
Sbjct: 135 LSRMAQAQESSYEAAVLAITGTNGKTTTAALTGQLCERAGK---KVAVAGNISPAALEKL 191

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +     + LA  +  +S   V  +S   S   +  H L+     A +  N+ +DH+D+H 
Sbjct: 192 MNC---LDLADQIVDMSDVWVLELS---SFQLVYTHTLNA---TAATVLNITQDHLDWHG 242

Query: 222 TQQAYFNAKMRLF 234
             QAY  AK R+F
Sbjct: 243 DMQAYAEAKSRIF 255


>gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 483

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 129/342 (37%), Gaps = 40/342 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +     SDSR    G +FVAI G + DGH F+ +   QGA   +V             
Sbjct: 24  ESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAEQGATVAIVDHEVESDGL---- 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSG 141
               P +VV +T   L   A     +  E     +I+ +TG+ GK++    +  +     
Sbjct: 80  ----PQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA--- 132

Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                +GPT + + SF  +  L   +         +++  G +H+   A        RL 
Sbjct: 133 ----TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RLT 180

Query: 201 GIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            I     +    +G  H+    +++    AK  + + LLP  + A++ ADD +   V+  
Sbjct: 181 RIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDEH---VVPM 236

Query: 260 AHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYN 314
           A  A   VL  G    Q   +    V A  +       +  +G        +PG   V N
Sbjct: 237 AGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355
           AL AA + +  G+    V   L   H + P R      N  G
Sbjct: 297 ALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 338


>gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
 gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
          Length = 481

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  ++      
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFDENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|254775010|ref|ZP_05216526.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 496

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TN+  DH+D++ +  AY        E L P  +  ++  DD  +  + +R    G RVL 
Sbjct: 189 TNIETDHLDFYGSADAYIAVFDAFVERLAPGGA-LVVCVDDPGAAALARRTAELGIRVLR 247

Query: 269 -SVGYQGKFIHLKKVCA--IHNKQQVT-----ISVEGKDFDFL---FPLPGEFQVYNALV 317
              G  G+    + + A  +  +QQ T     I + G+    L     +PG     NAL 
Sbjct: 248 YGSGSHGQAPSGEPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHMALNALG 307

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-------RIYVDYAHTSNSLE 370
           A    I IG  +  VL+ L     V  RFE VGT   GG       R++ DYAH    + 
Sbjct: 308 ALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTA--GGSAPSSTVRVFDDYAHHPTEIA 365

Query: 371 MILKNIRTI----TSGRIIVVF 388
             L  +RT+      GR I VF
Sbjct: 366 ATLAAVRTLLEQSGGGRSIAVF 387


>gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 456

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 12  PELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           P   ++L++ P+  R    +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+G
Sbjct: 4   PMTFSELTV-PLDARLVGGDCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGK 126
           A   +V              +  P LVV +TRK L+ L A    G     + AVTG+SGK
Sbjct: 63  AVGALVEHEVE--------GAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 127 SSVASFVQQICQRSG 141
           ++V   +  I +  G
Sbjct: 115 TTVKEMLASILRTRG 129


>gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
 gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
          Length = 457

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 21/144 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  V  DSR +  G +++ I G   +GH F+ QAI  GA+A++              
Sbjct: 23  EEMLMGVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDNGAKAVLWERR---------- 72

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ--I 136
             N P    +++V++T K L   A     +    ++ +TG++GK+S    VASF+ Q  I
Sbjct: 73  EPNPPKEVTVILVEDTTKALQDLARAYRNQLDMKVIGITGSNGKTSTKDIVASFMAQHYI 132

Query: 137 CQRS-GLSSFQIGPTSTISSFAQD 159
            Q++ G  + +IG   T+ SF+Q+
Sbjct: 133 TQKTMGNFNNEIGVPLTLLSFSQN 156


>gi|260435255|ref|ZP_05789225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
 gi|260413129|gb|EEX06425.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
          Length = 461

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 121/288 (42%), Gaps = 44/288 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSS---FQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + +TGT+GK++V   +  + + SGL++     +G ++   +F Q     TP P +L   L
Sbjct: 113 IGITGTNGKTTVTHLLSHVLEASGLTAPMGGNMGLSAADLAF-QIGSGATPRPDWLVMEL 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S    +    V+ +                  G +T L  DH++ H + +AY   K  L 
Sbjct: 172 SSYQIEAAPAVAPK-----------------IGIWTTLTPDHLERHGSLEAYRAIKRGLL 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQ 290
           E    +   A+  ADD   ++  +R+ + G  V S G     Q   + +     + N   
Sbjct: 215 E----RSECALFNADDPDLRQ-QRRSWDRGTWVSSEGARPDDQPADLWIDDEGMVRNNAT 269

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              + +         +PG     N L+ A   + +G+    + + L     VP R E +G
Sbjct: 270 RLFAADA------LAMPGRHNRQNLLLVAAASLKVGLSPQQIADALRTFPGVPHRLEKLG 323

Query: 351 TNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           T + G  ++ D   T+ ++ E+ L+ ++    G ++V+   GG   QG
Sbjct: 324 TLA-GASVFNDSKATNYDAAEVALRAVQ----GPVVVL--AGGQTKQG 364


>gi|121606305|ref|YP_983634.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|166224714|sp|A1VST5|MURC_POLNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120595274|gb|ABM38713.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 478

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 118/284 (41%), Gaps = 43/284 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  +    GL      PT     F    RL +      A A + L
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLD-----PT-----FVIGGRLNS------AGANAKL 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMR 232
            S    ++ VEA     D   L+ + ++A   TN+  DH+     D+   ++A+ +    
Sbjct: 152 GSG--DYIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFGNLKKAFVD---- 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IHN 287
            F   +P    AI+  DD   ++++       C + S G     Q + I+++ V A +H 
Sbjct: 203 -FLRRMPFYGTAILCTDDPVVRQIVPEM---SCPITSYGLNEEAQVRAINVRAVGAQMHF 258

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             Q    V+  D D +  L G+  V NAL A  + + + +  A V + L     V  RF+
Sbjct: 259 TAQRRNGVKLPDLDVVLNLAGQHNVLNALAAIAVAVELNVPDAAVQKALSDFTGVGRRFQ 318

Query: 348 FVG--TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
             G      GGR  V  DY H    +   L   R    GR +V+
Sbjct: 319 SYGELPARDGGRFTVIEDYGHHPVEVAATLSAARGAFPGRRLVL 362


>gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
 gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
          Length = 449

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 157/384 (40%), Gaps = 71/384 (18%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q         G  
Sbjct: 75  KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + ++G    ++S A D    T   I+           G+ H        G  +  +  +K
Sbjct: 135 NNKLGMFINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258
                 TN+   H+++  + +    AK  +F     K   A+I AD + Y+K   ++K  
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKKL 233

Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308
                    R+      ++     G+ ++LK              +  K  D   P +P 
Sbjct: 234 SITDIHSFGRSAKTSAELILYENLGEQVYLK------------YKINKKVLDVTIPFIPR 281

Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            F + Y  ++   L I I G D  +   HL  +    GR E +  N +  R+  DY + S
Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336

Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389
             S++  L+ ++ + +     + G
Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360


>gi|289423178|ref|ZP_06424993.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156509|gb|EFD05159.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 457

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D     A +  NL  DH++ H T + Y  AK R+FE  +  ++  I+ 
Sbjct: 167 ELSSFQLES--IDMFSPTASTVLNLTEDHLNRHHTMENYAKAKARIFENQVD-DTVCILN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            DD  ++ + +  H     V+    + KF   ++   + +   + ++ E ++   L    
Sbjct: 224 YDDPITRSMAEDCH---ADVVFFSRKDKF---ERGIYLDDDNNIIVNNEIEEIALLKADE 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             LPG   + N + A GL +A+G++  ++++ L+    V  R E+V T
Sbjct: 278 LSLPGGHNLENCMAAIGLTLALGVEIEVLVKVLKTFKAVEHRLEYVDT 325


>gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 461

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 149/372 (40%), Gaps = 54/372 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N++  DSR+I  G +F+ + G + DGH FI  A   GA A           FS    S 
Sbjct: 26  LNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVAT----------FSERAISG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GL 142
            P ++V+N        A     K   +++AVTG++GK+S    ++ +  ++       G 
Sbjct: 75  RPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKAYKTYKTQGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  IG   T+    +D        I L     ++    +  +S  A  H         I
Sbjct: 135 YNNDIGLPYTVLHMPEDTE-----KIVLEMGQDHMGD--IQLLSRIARPH---------I 178

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            L+    T +G  H+ Y  +++     KM++ + +   +S  I+ A       ++     
Sbjct: 179 ALL----TLIGEAHLAYFGSREKIAEGKMQIVDGM---DSNGILIAP---GDPILDPYLP 228

Query: 263 AGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V+  G +Q   +   K C    K  +T            PL G++   NA++AA +
Sbjct: 229 DSQMVIRFGDHQELVVEDIKEC----KDSLTFRTNVLPRPVTLPLTGKYNATNAMIAAYV 284

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
              + +    ++E LE + +   R E+V   + G  +  D Y     ++ +IL+    I 
Sbjct: 285 GKLLAVPDEDIIEALETVKLTRHRTEWVKA-ANGADLLADVYNANPTAMRLILETFAAIP 343

Query: 381 S---GRIIVVFG 389
           +   G+ I V  
Sbjct: 344 ANPNGKKIAVLA 355


>gi|194288896|ref|YP_002004803.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193222731|emb|CAQ68734.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 877

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 147/383 (38%), Gaps = 50/383 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTGT+GK+ VA  V ++ Q   LS    G   +   F    ++ +            
Sbjct: 485 VVGVTGTNGKTVVARLVARLLQ---LSGKHTGLACSDGLFLDRRQVESGDRANWEAGHRI 541

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI-DYHQTQQAYFNAKMRLF 234
           L ++ V     E  S  +    L   +   G  TN  + DH+ DY+   +      +R  
Sbjct: 542 LMNRAVEAAVFENDSGSILSEGLAYDRCQVGVVTNFDQPDHLGDYYVEDEDRMYNVLRTQ 601

Query: 235 EELLPKESPAIIYADDAYSKE---------------------VMKRAHNAGCRVLSVGYQ 273
            +++ ++  A++ A D    E                     V  RA  AG R + V  +
Sbjct: 602 VDVVLQDGAAVLNARDERLVEMAGLCDGDVIFFGLTPELPAIVSHRA--AGKRAVYV-RE 658

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           GK      V A    +   + V      +   +   FQ+ N L A     A+GI + L+ 
Sbjct: 659 GKI-----VLATGTSETALVDVAAVPLTYAGRV--AFQIENVLAAVAAGWALGISNDLIR 711

Query: 334 EHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +    V    VPGRF     N  G  + VD AH + +LE +   +    + R +VV+G
Sbjct: 712 AGVVTFDVGQVDVPGRFTLFERN--GATVVVDDAHNAPALEALATALERFPAERRMVVYG 769

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIE 441
            G  R        GK+     D   + +D       P +E    ++  +  G  +   I+
Sbjct: 770 AGVQRRDQDLVRQGKVLGQHFDRVFLCEDRSVKRALPDAEARALLKQGLYEGRRVTKIID 829

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464
           +G R  AI  A+  L   D+LV+
Sbjct: 830 EGTRASAIEAALSQLVPGDLLVL 852


>gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
 gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
          Length = 457

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 18  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 70  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 123

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 124 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 176

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 177 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 233

Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G             +   + I   G   D      GE    NAL A    +A G+ 
Sbjct: 234 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 293

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A +   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 294 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 353

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 354 LVIGEMGEVGDEG 366


>gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei NCTC 13177]
 gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
 gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
          Length = 468

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G             +   + I   G   D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A +   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|45657726|ref|YP_001812.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600966|gb|AAS70449.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 490

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 121/305 (39%), Gaps = 52/305 (17%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFE--------------------------ELL---- 238
            TN+  DH+DY+QT++   NA +R  E                          ++L    
Sbjct: 183 LTNVDEDHLDYYQTRENLLNAFVRYMEGASRRLILNLDDIGIRDSIKLIHDHSKILGFSK 242

Query: 239 ---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQV 291
              P E  + +  +   SK+ +K +  AG    S    G    K ++      I     +
Sbjct: 243 YKNPDEFTSGLSRNSEKSKDDLKNSDIAGAEKTSKVLYGIDPDKIVYYTIQSGI-----L 297

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               + K++ F    PGE  + NAL A   C   GI  + ++  + +   V  R E++G+
Sbjct: 298 YFYFQKKEYSFSLKYPGEHYLKNALAAILACFETGIPLSDLVSKISEYSGVNRRLEYLGS 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA--LD 408
            + G  +Y DY H    ++ +++++  +   GR +++F     R    + +  + A  LD
Sbjct: 358 KN-GIEVYDDYGHHPTEIKAVIQSMEELKKEGRAVILFQP--HRYTRTQNLYKEFAESLD 414

Query: 409 LADIAIVTDDNPRSEDP-EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +I  +       EDP   ++AE+I      P  I      E I T    L   D LV 
Sbjct: 415 SGEIVFLLPIYSAGEDPIYGVKAELISDFMKFPAKILPKEISEGIFTLKSFLKPGDKLVT 474

Query: 465 AGKGH 469
            G G+
Sbjct: 475 LGAGN 479


>gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
 gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
          Length = 468

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHTLGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G             +   + I   G   D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A +   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 420

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 181/453 (39%), Gaps = 75/453 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR +++G IF A+ G+  +G+ F  +A+  GA AIV+       ++     +N+ +
Sbjct: 14  ICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASAIVLDEIIENLNY-----NNSDV 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V N    L  FA+    K  + I+ +TG++GK++V   +  +  +        G ++ 
Sbjct: 69  FFVKNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQ--------GYSTH 120

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IAGSFTN 211
            +    +N +  P  +     L+   S  +  V + A+  G +   L  I L   G  TN
Sbjct: 121 ATEGNYNNHIGVPLTL-----LNIRDSHDIAIVEMGANHIG-EIKALCEISLPDYGYITN 174

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            G  H++     +     K  L+E L    S + +  +D+ + +         C   ++ 
Sbjct: 175 FGLAHLEGFGGIEGVIKGKSELYEHLDKNNSISFVNPNDSIALK--------NCNSQNIE 226

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +        K           + V   + + L  L G +Q  N L A    I IG +   
Sbjct: 227 FTDGVNFFYKSG--------LLGVSFGNEEILTNLTGSYQENNVLAA----ITIGRNF-- 272

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRG-------GRIYVD-YAHTSNSLEMILKNIRTITSGR 383
               LE   +  G   ++  N+RG         I++D Y     S+E  L+N   +   +
Sbjct: 273 ---ELEDSKIAKGIANYIPQNNRGQIFKTGKNTIFLDAYNANPTSMEASLRNAVNLYK-K 328

Query: 384 IIVVFGCGG-------DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--------- 427
           +  V+  GG        + Q +R I     L++ +   +      S+ PEK         
Sbjct: 329 MPHVYIAGGLLELGEYSKSQHQRMIEIFQELEIENAWFIGKQFEESQMPEKYYNYRDTAQ 388

Query: 428 ----IRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               +R + IHG   +I KG+R  A+   ++ L
Sbjct: 389 ALEALRGKQIHGNFIWI-KGSRSFALEALLDEL 420


>gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 465

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN V +DSR ++ G +F  I G   DGH F  QA  +GA A+V S          T+   
Sbjct: 25  INAVRTDSRAVEPGDLFFCIEGWNFDGHEFAAQAETRGAVAVVASRMPE----GVTV--- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P+++V +T + L   AS         ++AVTGT+GK++V   +  +  R
Sbjct: 78  -PVIMVRDTVRALGQLASCWRDLCGSILVAVTGTAGKTTVKEMLAAVVSR 126


>gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
 gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
          Length = 449

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 147/377 (38%), Gaps = 57/377 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     V  DSR I+   +FV + G + DGH F  QA   GA A + S          TI
Sbjct: 19  ETPFASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHP--------TI 69

Query: 87  RSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                ILV  V +T K     A     K    I+ +TG++GK++    V+ +  +     
Sbjct: 70  EPPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQ----K 125

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHV-SVEASSHGLDQHRLDG 201
           +Q   T        +N L  P  I  A   +   +   G+ H   +E  S   +      
Sbjct: 126 YQTYKTQG----NHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPD---- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSK 254
               A + T +G  HI+   +++    AKM +   L       +P + P +    + +  
Sbjct: 178 ----AAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLL----EPFVP 229

Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + +     G   L+ G  QG  +         ++ Q   +V G  F    P+ G + V 
Sbjct: 230 NLTQTIETFG---LTEGDLQGDIVE-------ESQDQTIFTVAGTTFT--LPVLGGYNVK 277

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NAL+A G+    G+    + E L    +   R ++V T   G  I  D Y     ++ ++
Sbjct: 278 NALIAIGIGRHFGVADEAIKEGLAHFQLTKNRTQWV-TAGNGAAILSDIYNANPTAMGLV 336

Query: 373 LKNIRTIT-SGRIIVVF 388
           L + R +  +GR I V 
Sbjct: 337 LDSFRKLPLAGRRIAVL 353


>gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
 gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
          Length = 457

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/342 (19%), Positives = 137/342 (40%), Gaps = 28/342 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           DF  L N L+    Q   +++  +++D+R +  G +F+A+ G   DGH FI +A  +GA 
Sbjct: 2   DFDWLANVLTT-DYQGDNQQVLNINTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAI 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V     +         +    +V++TR  L    + +  +     +A+TG+ GK++ 
Sbjct: 61  GVIVDHKVDV---------DIAQFIVNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTT- 110

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSV 187
              V+++C  + + S      +T  +F  +N +  P  +   +     +    G  H+  
Sbjct: 111 ---VKEMC--AAILSVHGDVLATKGNF--NNDIGVPLTLLRLEPQHRFAVIELGANHLGE 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A +  +        K       N+   H++   +      AK  +F+  L +   AII 
Sbjct: 164 IAYTTAM-------AKPDVAVVCNVAPAHLEGFGSLMGVAKAKGEIFDG-LKENGVAIIN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D  +S+  + +      +  S   +            + +   T+  + K       LP
Sbjct: 216 CDSEFSQYWLDKLEGRNIKRFSTSEKLDIWAEDISLDANARASFTLCTKQKKVPVTLALP 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           G+  + NAL+AA L   + +    +   L  +  V GR   +
Sbjct: 276 GKHNISNALIAAALTSELDVTLDDIAHALATMGDVKGRVNLI 317


>gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 468

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G             +   + I   G   D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A +   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|313127012|ref|YP_004037282.1| dihydropteroate synthase [Halogeometricum borinquense DSM 11551]
 gi|312293377|gb|ADQ67837.1| dihydropteroate synthase [Halogeometricum borinquense DSM 11551]
          Length = 834

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 16/189 (8%)

Query: 287 NKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLC--IAIGIDSAL---VLEHLEKL 339
           N Q+  ++V   D+  D   PL G +Q  NA +A  L   I   +DS +    LE   + 
Sbjct: 232 NHQESAVAVVADDWSVDSRIPLLGAYQAENAGIACVLARQITDELDSEIDETTLERGLRT 291

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
              PGRFE + T+     + +D AH   + E +   +       + +VFG   D+DQ K 
Sbjct: 292 AYWPGRFEVMETDPF---VVLDGAHNPGACESVASVLDDFDVDALHLVFGAMHDKDQRK- 347

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLN 457
             M +   D   +     +NPRSEDPE + A +    G+       + + A+ TA +  +
Sbjct: 348 --MVEALPDADSVITCRPNNPRSEDPETL-AHVFEDAGVDDITVGDDVLSAVETARDRAD 404

Query: 458 KQDVLVVAG 466
             D ++  G
Sbjct: 405 ADDCILAVG 413


>gi|315924805|ref|ZP_07921022.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621704|gb|EFV01668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 457

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 22/216 (10%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D     A +  NL  DH++ H T + Y+ AK R+FE     E   ++ 
Sbjct: 168 ELSSFQLET--IDTFAPKAAAILNLAPDHLNRHGTLENYYAAKARIFEN-QSAEDILVVN 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------ 301
           ADDA   +V++    A  R +    +G     +    I+ K Q  +  EG D D      
Sbjct: 225 ADDA---DVVRCVRKAPSRKIWFSLKG-----RPEKGIYLKGQTLMIAEGTDADQDTAVI 276

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G   V NA+ A GL   +G+   ++ + L     V  R EFV T   GG  Y
Sbjct: 277 TEEALGIKGPHNVMNAMAAIGLAYFMGVPLVIIQKTLRAFKGVEHRQEFVAT--IGGVDY 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           ++ +  +N+ +  +  +  +T   I++  G     D
Sbjct: 335 INDSKGTNT-DAAITALNAMTKPTILIAGGYDKQED 369


>gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 147

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 16/119 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           KI  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G
Sbjct: 77  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYG 130


>gi|242373469|ref|ZP_04819043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348832|gb|EES40434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
          Length = 449

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 51/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ R   P   YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSVLTGRLSGNIGYVASKVAQEAR---PDE-YLITELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+T + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHETLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289
           ++++     +     Y    Y +  +  + N   + +    Q +   I++K    ++N  
Sbjct: 208 QIYKNQTKDD-----YLICNYHQRHLIESENLKAKTMYFSTQQEVDGIYIKDGFIVYNGI 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++   +  KD      LPGE  + N L A    I  G+    +++ L     +  R +++
Sbjct: 263 RI---INVKD----LVLPGEHNLENILAAVLAAILAGVPVKAIVDSLTTFSGIDHRLQYI 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           GTN R  + Y D +  +N+L         + S +  +++ CGG DR
Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFKQPIIWLCGGLDR 355


>gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 134

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V              +  P 
Sbjct: 24  VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 75

Query: 93  LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+   +     +   P  + AVTG+SGK++V   +  I +  G
Sbjct: 76  LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 125


>gi|187933070|ref|YP_001884399.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B
           str. Eklund 17B]
 gi|229486482|sp|B2TI04|MURC_CLOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187721223|gb|ACD22444.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 460

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 132/349 (37%), Gaps = 68/349 (19%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVV--DNTRKFLSL--FASRLYGKHPEN 116
            GA+  +  S  +++D     ++A I  N P L+   +N  + ++   F   +   H  N
Sbjct: 54  SGADIYIGHSEKNIKDVDLVVYTAAIPENNPELIYAKENNIELMNRAEFLGSIMKGHKYN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS--------------SFQIGPTSTISSFAQDNRL 162
           + A++G  GK++  S +  I  ++ L               +F+IG +         +  
Sbjct: 114 V-AISGAHGKTTCTSMLSNITLKANLDPTILVGGELDIIGGNFRIGSS---------DYF 163

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T +  Y    LS+    GV                            N+  DH+DY++ 
Sbjct: 164 ITEACEYKRSFLSFFPYVGV--------------------------ILNIDADHLDYYKD 197

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                      F +L+P +   I Y  D+  KE++ +A    C  LS G++   +  + +
Sbjct: 198 IDE-ITETFGQFADLIPNDGYLIGYVGDSRVKEILFKAK---CNTLSYGFENADVTARNI 253

Query: 283 CAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              + K   +  V     K FD     PGE  + NAL +  + +   ++   ++  L + 
Sbjct: 254 -TFNEKGCASFDVYKHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLSEC 312

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                RFE+ G    G  +  DYAH    ++  L   + I   +   VF
Sbjct: 313 KGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVF 360


>gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
 gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
          Length = 469

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 157/378 (41%), Gaps = 61/378 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FVA+ G + DGH FI  A+++G    +   +++ +      +    +
Sbjct: 28  VSTDSRQVAPGELFVALRGERFDGHDFIIPAVSKGVTIFLAEESWAAK--HELPKGAGAV 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LV D  R    L A   Y +   N+  + VTG++GK++    + +I         Q GP 
Sbjct: 86  LVPDTLRALGDLAA---YHRRRFNLKTVCVTGSNGKTTTKEMLARILA-------QTGP- 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206
              +    +N +  P  I+    L+      V  + +  S  G     +D +  IA    
Sbjct: 135 GLKTEGNLNNLIGLPLTIF---RLTGRERWAVFEIGM--SEFG----EIDRLAEIAEPQV 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---------- 256
           G  TN    H++   + +    AK  LF  L P  S A+   DD                
Sbjct: 186 GIITNAFPAHLETLGSVEGVARAKGELFLRLKPG-SVAVYNVDDPLVSTCPTHLNVTRLT 244

Query: 257 --MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             ++ A  +   + S+G +G+   L+       +QQVT+S  G+             +YN
Sbjct: 245 FGLRGAEVSSASIQSLGKRGESFTLR---LPDGEQQVTLSAYGR-----------HNIYN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMI 372
           AL AA    A+G+   L+ + LE+      RF+        G   +D ++ +N  S+   
Sbjct: 291 ALAAAAAAHALGVPGDLIRQGLEEFSPYDKRFQL---EEVAGVTLIDDSYNANPASMAAA 347

Query: 373 LKNIRTITS-GRIIVVFG 389
           L  ++ +   GR++ V G
Sbjct: 348 LTTLKELQGEGRLVAVLG 365


>gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei K96243]
 gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
 gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia pseudomallei K96243]
 gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
          Length = 468

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G             +   + I   G   D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A +   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|302388641|ref|YP_003824462.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302199269|gb|ADL06839.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 875

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 158/387 (40%), Gaps = 41/387 (10%)

Query: 109 LYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           L+ + P    ++AVTGT+GK++    V  I    GL   ++G T T   +     +    
Sbjct: 470 LFPQEPPRFPLVAVTGTNGKTTTVRMVANILSAHGL---KVGMTCTDGVYVGSMCIRRGD 526

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQ 224
                 A   L    V    +E +  GL +  L       G  TN+  DH+  D   T +
Sbjct: 527 CSGPESAKMVLLDPSVEAAVLEIARGGLIRGGLAYEYADVGIITNITGDHLGQDGVNTLE 586

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                K  + E++ P E  A++ ADD  S EV KR  +   RV+    Q   + L+K  A
Sbjct: 587 DLMFVKSLVAEQVKP-EGYAVLNADDITSVEVKKRVKS---RVIFFSLQEDNLVLRKHIA 642

Query: 285 -----IHNKQQVTISVEG-------KDFDFLFPLPGEFQ--VYNALVAAGLCIAIGIDSA 330
                ++ K       EG       K  D    + G  +  V NAL AA    A+ + + 
Sbjct: 643 EGGRGVYVKDGFIFFQEGDKSVSLMKVADIPAAMNGRARHNVQNALAAAAAGWALDVPAE 702

Query: 331 LVLEHLEKLH----VVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +   L          PGR   +   S G  RI +DY H   +LE I+   R++   R++
Sbjct: 703 TIRRALSDFRCDESTNPGRLNII---SEGNIRIILDYGHNPAALEAIIGTARSMNPARMV 759

Query: 386 VVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            V    GDR       +G++A      + I  D++PR   P ++ + ++ G      K +
Sbjct: 760 GVIASPGDRRDEAIVKLGQVAGRGFQRLIIKEDEDPRGRKPGEVASLLLEGALSAGLKKD 819

Query: 445 RI-------EAIRTAIEMLNKQDVLVV 464
           +I       EAI  A+E     D++V+
Sbjct: 820 QIDVILKEEEAITFALENAQDGDLIVI 846


>gi|294783655|ref|ZP_06748979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294480533|gb|EFG28310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 609

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 155/371 (41%), Gaps = 55/371 (14%)

Query: 9   KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           KDF E++     N+L +F    ++ +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 174 KDFSEVLKREKLNEL-LFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T  ++  I+ V +T   +   A++   K    ++ +TG+
Sbjct: 229 LDKGASLVIADN---------TDIADERIVKVADTIATMQDLATKYRNKLDIQVIGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +  +   +    G          +N +  P  I     L+    +   
Sbjct: 280 NGKTSTKDIVYSLLSKKAKTLKTEGN--------YNNHIGLPYTI-----LNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  L  E + KE+
Sbjct: 327 VLEMGMSSLG-EIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELL-EFVNKEN 384

Query: 243 PAIIYADDAY--SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              +  DD Y    +V K   N         Y+             + +    +++GK++
Sbjct: 385 -TFVCGDDVYLAKLDVNKIGFNEDNNFRIESYE------------FSDKGSKFTLDGKEY 431

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G+  + N  +A  L   IG+    + E L+ + +   RF+ +     G  IY+
Sbjct: 432 E--MSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMRFQEIRV---GEDIYI 486

Query: 361 DYAHTSNSLEM 371
           + A+ ++   M
Sbjct: 487 NDAYNASPTSM 497


>gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Oceanobacillus iheyensis HTE831]
 gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15)
           [Oceanobacillus iheyensis HTE831]
          Length = 455

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 136/325 (41%), Gaps = 34/325 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV+ D+R   +  +++ IVG + DGH FI  AI  GA A +   +  L    +   ++
Sbjct: 25  IQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKNGAIATLWDKSIPL---PSEWDNS 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+  V++T   +   A+         ++ VTG++GK++    +  + + S         
Sbjct: 82  FPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTTKDLITSVVKTSY-------- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIAGS 208
            +T +    +N +  P        L+ LS Q  T V V     G+ Q   ++ +  IA  
Sbjct: 134 KTTATQGNLNNHIGLP--------LTILSMQPDTEVLV--LEMGMSQFGEIELLSKIAEP 183

Query: 209 ----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  HI+   +++    AK+ + E +   +S   ++ DD       +      
Sbjct: 184 DYTVITNIGESHIENLGSRKGIAKAKLEIIEGI---KSNGNLFIDDDEPLLAKENIDMDD 240

Query: 265 CRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +++ +G+  +  I++  V  +H  +    + E  D  +   L GE    NA  A  +  
Sbjct: 241 SQIIGIGFTKESDINISNV-KVHPDRT---TFEVTDKPYHVNLLGEHHAKNAAFAISIGK 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEF 348
           A+ I    +     KL V   RFE 
Sbjct: 297 ALNISHENIQLAFNKLEVTGMRFEL 321


>gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 479

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 154/379 (40%), Gaps = 45/379 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV +A           
Sbjct: 26  RDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVEAALKAGAALAVVETAQ-----RGKFA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P+L+VD+    L         +    ++AVTG+ GK+S    ++ +    G +    
Sbjct: 81  PDAPLLLVDDVLDGLRDLGRAARARLDAKVIAVTGSVGKTSTKEALRGVLGAQGETH--- 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ----GVTHVS-VEASSHGLDQHRLDGI 202
              ++++SF  +N      P+ LA+  + +       G+ H   +E     +  H    +
Sbjct: 138 ---ASVASF--NNHWGV--PLTLARCPASVRYAVFEIGMNHAGEIEPLVKMVRPH----L 186

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +I    T +   H+++    +A  +AK  +F  L P    A++  D+   K +   A  
Sbjct: 187 AII----TTVEPVHLEFFSGIEAIADAKAEIFSGLEPG-GIAVLNRDNPMFKRLTASARK 241

Query: 263 AGC-RVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           AG  R++S G   K     +  A+H +   V  S+ G D  +   +PG     N+L    
Sbjct: 242 AGVERIVSFGVHAKADARLRDIALHADCSAVDASILGHDVTYKLNIPGRHIAMNSLAVLA 301

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEM---- 371
               +G D AL    L ++    GR      E      +G    +D ++ +N   M    
Sbjct: 302 AADLVGADLALAALALAQVEPAAGRGVRRTLEL----GQGAATLIDESYNANPASMAAAL 357

Query: 372 -ILKNIRTITSGRIIVVFG 389
            +L +      GR I V G
Sbjct: 358 GVLGSAEISGQGRRIAVLG 376


>gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 442

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 133/339 (39%), Gaps = 63/339 (18%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+DSR      +F A+ G   D H ++ +A  QG  A VV               N
Sbjct: 8   VENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHP---------TEGN 58

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              L+V ++R  L   A  L  K    ++A+TG+SGK++V   V  I Q+S + S  +  
Sbjct: 59  IARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDV-- 116

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +F  +N +  P + + L +   +   + G  H+   A +  L Q     + L+  
Sbjct: 117 LFTQGNF--NNDIGVPLTLLRLTERHKFAVIELGANHIGEIAYTTSLAQ---PDVALV-- 169

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H++   +      AK  +F   L K   AII             AHN     
Sbjct: 170 --NNVMAAHLEGFGSIDGVATAKGEIFRG-LTKNGVAII-----------NLAHN----- 210

Query: 268 LSVGYQGKFI-----HLKKVCAIHN------KQQVTISVEGKDF---------DFLFPLP 307
               YQ K+      H  +  A  N       +Q+  S +G  F             P  
Sbjct: 211 ----YQQKWQADIGRHAVQYFAYDNPRADFYAEQIHFSEQGASFLLHTPQGRVQINSPYL 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           GE  + NAL A  L + +G  +A V + LE   +V GR 
Sbjct: 267 GEHNISNALAATALSMNVGATTAQVKKGLETPSLVKGRL 305


>gi|302522557|ref|ZP_07274899.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
 gi|302431452|gb|EFL03268.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
          Length = 470

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           + + KV       +VT+S+ GK   F   +PG    +NA+ A    +++G+    +   L
Sbjct: 252 VRVHKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASAL 311

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---GGD 393
                V  R +  G  + G ++   YAH    +   L+ +R    GRI+VVF        
Sbjct: 312 RSYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRT 370

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432
           ++ GK   MG+ AL LAD ++V D  P  EDP E + +E+
Sbjct: 371 QELGKE--MGQ-ALALADSSLVLDIYPAREDPIEGVTSEL 407


>gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium longum subsp. longum F8]
          Length = 480

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 133/343 (38%), Gaps = 42/343 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +     SDSR    G +FVAI G + DGH F+ +   QGA   +V            +
Sbjct: 21  ESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQGATVAIVDH---------EV 71

Query: 87  RSN-TPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRS 140
           +S+  P +VV +T   L   A     +  E     +I+ +TG+ GK++    +  +    
Sbjct: 72  KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA-- 129

Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                 +GPT + + SF  +  L   +         +++  G +H+   A        RL
Sbjct: 130 -----TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RL 176

Query: 200 DGIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             I     +    +G  H+    +++    AK  + + LLP  + A++ ADD +   V+ 
Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDEH---VVP 232

Query: 259 RAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVY 313
            A  A   VL  G    Q   +    V A  +       +  +G        +PG   V 
Sbjct: 233 MAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 292

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355
           NAL AA + +  G+    V   L   H + P R      N  G
Sbjct: 293 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 335


>gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 328

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V              +  P 
Sbjct: 24  VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 75

Query: 93  LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+   +     +   P  + AVTG+SGK++V   +  I +  G
Sbjct: 76  LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 125


>gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 465

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 153/369 (41%), Gaps = 31/369 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R     S DSR +    +F A+ G++ DGH F+  AI +GA   VVS A + +     + 
Sbjct: 23  RPATGYSIDSRTLATDDLFFAVKGDRFDGHDFVAAAIHRGAVGAVVSRARAAELLP--LI 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  +L+VD+    L   A+ +     + ++ VTG++GK++    +  +           
Sbjct: 81  DHASLLLVDDPLAALQQLAAAVRRHWGKRVVGVTGSAGKTTTKEAIAAV--------LGA 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-A 206
           G     S    +N    P        L  L ++    V     +H  +   L  I +   
Sbjct: 133 GYRVLKSQGNLNNNFGLP------LQLLRLDTEDEIAVIEMGMNHAGEITALARIAMPDW 186

Query: 207 GSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           G  TN+G+ H++ +         AK  L +  LP E  A +  DDAY  +  +  H    
Sbjct: 187 GVVTNVGKAHVENFTDGIAGVARAKYELVQA-LPAEGIAFLNCDDAYVSQFGRDFHG--- 242

Query: 266 RVLSVGYQGKFIHLKKVCAIHN----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           RV+  G +G   HL +V  + N      ++T+S EG+       L GE  V NAL A  +
Sbjct: 243 RVILFG-RGPCAHL-RVEQLENLGAEGTRLTVSAEGRCATLHLHLLGEHNVSNALAALAV 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +A  I   +    LE L     R + +    RG  I  D Y     +L+ ++  +  + 
Sbjct: 301 GLAAEIPLEIGARALESLRADEKRGQII--PWRGASIVNDCYNSNPEALKAMIATLMGMP 358

Query: 381 SGRIIVVFG 389
             R I+V G
Sbjct: 359 GNRHILVAG 367


>gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 452

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 134/326 (41%), Gaps = 41/326 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +         +
Sbjct: 24  IDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGAGALLVSRKLDI---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVV +TR      A+ +  + P  ++A+TG+SGK+SV      I    G + +  G 
Sbjct: 75  LPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECGNTLYTAGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            TP   Y    L      G  H    A +  L +         A   
Sbjct: 135 LNNDIGVPMTLLRLTPEHEYAVIEL------GANHQGEIAWTVSLTRPE-------AALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
            NL   H++   +      AK  +F   LP    AI+ AD+            ++V + +
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFTG-LPANGIAILNADNNDWLNWQSVIGDRKVWRFS 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            N    + +  +    IH+       +  + T+     D D L PLPG   + NAL A+ 
Sbjct: 241 PN----LDTSDFSATNIHITS-----HGTEFTLRTPTGDVDVLLPLPGRHNIANALAASA 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346
           L +A+G     +   L KL  VPGR 
Sbjct: 292 LAMAVGAPLQAIKAGLAKLKAVPGRL 317


>gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 153

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +      ++D  
Sbjct: 21  QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  + 
Sbjct: 75  ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLL 128


>gi|303232802|ref|ZP_07319487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
 gi|302481288|gb|EFL44363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
          Length = 545

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 34/242 (14%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  DSR +Q G +FVA +G   +G+ +  +AI  GA  I ++   S QD       N  
Sbjct: 33  DVVIDSRRVQKGSMFVAFIGEHTNGNDYALRAIEAGAACICLTQDAS-QDLICAAEQNGC 91

Query: 92  ILVV---DNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFV-QQICQRSGLSSFQ 146
           +L+    D+   FL   AS    ++   I + +TG+ GK++      Q +  R  + + Q
Sbjct: 92  VLLRAQNDDAETFLLRLASWWRTQNMHWIVVGITGSCGKTTTKDLCAQALATRYRVHATQ 151

Query: 147 ------IG-PTSTISSFAQDN------------RLTTPSPIYLAKALSYLSSQGVTHVSV 187
                 IG P + +S+ AQD              L T S + L   L  +++ G +H+ +
Sbjct: 152 GNFNNLIGVPLTILSASAQDEVIVCEMGMNHPGELATLSRVAL-PCLCVITNIGTSHIGI 210

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +   +L+ I  I G +T   + H   H + Q          ++ LP E P ++ 
Sbjct: 211 LGSREAIATAKLEIITAIRG-YTGSSKTHASEHASAQ-------LPVQKPLPAEIPPMLL 262

Query: 248 AD 249
            D
Sbjct: 263 LD 264


>gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus influenzae 10810]
          Length = 457

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 126/322 (39%), Gaps = 30/322 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ E+++D+R   +  +F A+ G K D H    Q + Q      V+     ++ S +I  
Sbjct: 24  QVEEINTDTRKSVSNSLFFALKGEKFDAH----QYLDQAVAQGAVAVVVQQENSSISI-- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A  L  K     +A+TG+SGK++V      I Q +   S  + 
Sbjct: 78  --PQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T+   +F  D       P+ L   L          + + A+      +    ++  A  
Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264
             N+   H++   +      AK  ++   L K   AII A+    D + KE+   A    
Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  + GK   +K V         T+     + D   P  GE  V NAL A  L + 
Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G   A V   LE+   V GR 
Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319


>gi|325295150|ref|YP_004281664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065598|gb|ADY73605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 435

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 117/301 (38%), Gaps = 48/301 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+N +  DSR+++ G +FV + GN+ DGH FI  A   GA         +L + +  I  
Sbjct: 19  KVNSIEFDSRNVKKGSLFVPLRGNR-DGHQFIKDAFQNGASG-------TLSERTLPIPE 70

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-----SGLS 143
              ++ V NT +   L      G      +A+TG+ GK++    +  +  +       + 
Sbjct: 71  GKFLIEVKNTFEAFKLLGKWKRGNFNGTTIAITGSVGKTTTKELLTHVFSKFFKTYRNVK 130

Query: 144 SFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           SF   +G T T+S+   D  L             Y+   G        +  G     ++ 
Sbjct: 131 SFNNILGLTYTLSNLPLDTEL-------------YIQELG-------TNRQGEIPELVEI 170

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      T + + H    +        K+ + E  +    P I + + + SKE      
Sbjct: 171 VKPEISVVTAVEKAHTAGFKDISDIVKEKLSITEGAILSIVP-IQFKEFSKSKE------ 223

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 ++ G +G  I L  V    NK +  I   G+   F  P+PG   V + L+A GL
Sbjct: 224 -----TITFGREGD-IKLLDVQLFPNKTEFLIESFGRRLQFFSPIPGLGVVNSTLIAVGL 277

Query: 322 C 322
            
Sbjct: 278 A 278


>gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 451

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +VS+DSR +QAG +F+A+ G    G  F+  A  QGA A +V+      D         P
Sbjct: 32  DVSTDSRRLQAGELFIALRGPNFRGEDFLAAAKGQGAVAAIVAEYQPDADL--------P 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            +VV +T   L   A     +      A+TG++GK+S    +Q++ Q  G +   +G
Sbjct: 84  QIVVADTLAALQALARDRRERSQAQFFAITGSNGKTSTKEILQRLLQTRGQTLATLG 140


>gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
 gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
          Length = 473

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 41/232 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F A  G + DGH +   A+  GA A++ +                P +VV
Sbjct: 34  DSREVRQGSLFAAFAGERVDGHDYARAAVEAGAVAVLAARPV-----------GCPAIVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------- 148
           D+    L   A  +  +    ++A+TG++GK+S    + Q+ +R   + +  G       
Sbjct: 83  DDVVAALGALACAVVERLGTAVVALTGSAGKTSTKDLIAQLLERKAPTVWTPGSLNNEIG 142

Query: 149 -PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            P + +++ A+   L              + ++GV H+      H L Q     I L+  
Sbjct: 143 LPLTALTATAETRHLVL-----------EMGARGVGHI------HYLAQLTPPTIGLV-- 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              N+G  H+    +++A   AK  L E  LP++  A++ ADD   + +  R
Sbjct: 184 --LNVGSAHLGEFGSREAIAQAKGELVEA-LPEDGVAVLNADDPLVRAMAAR 232


>gi|311741530|ref|ZP_07715354.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303700|gb|EFQ79779.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 487

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 169/422 (40%), Gaps = 60/422 (14%)

Query: 84  ATIRSNTPILVV--DNTRKFL---SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           A I  + P LV   DN    +    L A+ + G H + +LA  GT GK+S  S      Q
Sbjct: 81  AAIPQDNPELVAAKDNDIPVIRRSDLLAALMEG-HKQVLLA--GTHGKTSTTSMTVSAMQ 137

Query: 139 RSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +GL  SF IG         Q NR  T             ++ G T  +  A +   D  
Sbjct: 138 HAGLDPSFAIG--------GQLNRAGT-------------NAHGGTGEAFVAEADESDAS 176

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            L     +A   T +  DH+D+  +++AYF       + + P+    ++ A+D ++    
Sbjct: 177 LLRYSPDVA-VLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVVCAEDEHAARAG 235

Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-------------FDFL 303
           +RA   G  V++ G   K F     + A   +++ T   EG D               + 
Sbjct: 236 ERALERGINVVAYGSPEKSFTSTVPLAAELVREETT--AEGMDTTVNLDLPSVSETVRYE 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYV 360
             +PG   V N++ A    +  G   A + E L     V  RFE+ G+  + G   R++ 
Sbjct: 294 LQIPGHHMVLNSMGALIAGVLSGGAPAAIAEGLADFGGVRRRFEYRGSVDKQGKPVRVFD 353

Query: 361 DYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           DYAH    +  +L+  R         GR+I  F         +       AL LAD A+V
Sbjct: 354 DYAHHPTEVAAVLRAARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQALSLADAAVV 413

Query: 416 TDDNPRSEDP-EKIRAEII-HGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            D     E P E I + II   +P  ++   + +   A R  + ++   DV++  G G  
Sbjct: 414 LDIYGAREQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGDVVLTIGAGSV 473

Query: 471 TV 472
           T+
Sbjct: 474 TM 475


>gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
 gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
          Length = 446

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 31/242 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R IQ G +F+A+ G   D + FI +A  QGA   VV+           +++  P+
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A     + P   + VTG+ GK++  + +  + ++ G         ++
Sbjct: 76  IFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209
             SF  +N +  P        L+ L  +   H +V    ++H  +   L G+ K      
Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAII 179

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G  H++   + +    AK  +FE  L  +  A+I  DD +++   + AH+   R++S
Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236

Query: 270 VG 271
            G
Sbjct: 237 FG 238


>gi|118463520|ref|YP_881541.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium 104]
 gi|166224703|sp|A0QF53|MURC_MYCA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118164807|gb|ABK65704.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium avium 104]
          Length = 496

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ +  AY        E L P  +  ++  DD  +  + +R    G RVL 
Sbjct: 189 TNIETDHLDFYGSADAYVAVFDAFVERLAPGGA-LVVCVDDPGAAALARRTAELGIRVLR 247

Query: 270 VGY--QGKFIHLKKVCA--IHNKQQVT-----ISVEGKDFDFL---FPLPGEFQVYNALV 317
            G    G+    + + A  +  +QQ T     I + G+    L     +PG     NAL 
Sbjct: 248 YGSGPHGQAPSGEPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHMALNALG 307

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-------RIYVDYAHTSNSLE 370
           A    I IG  +  VL+ L     V  RFE VGT   GG       R++ DYAH    + 
Sbjct: 308 ALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTA--GGSAPSSTVRVFDDYAHHPTEIA 365

Query: 371 MILKNIRTI----TSGRIIVVF 388
             L  +RT+      GR I VF
Sbjct: 366 ATLAAVRTLLEQSGGGRSIAVF 387


>gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
 gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
          Length = 455

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 159/391 (40%), Gaps = 47/391 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ I  V  DSR      +F+ + G + DGH F+  A+A GAEA +    +  +     
Sbjct: 20  EDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAEATLWKKGHEGK----- 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             ++ P++ V++    L   A    GK    ++ +TG++GK++    V  +  +     F
Sbjct: 74  -PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLAK----RF 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +  T   ++F  +N +  P  I     L    S  +  + +     G   H  + ++  
Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +G  HI++  T+    +AKM + + L  KE    IY  D    E  +RA     
Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G++ +          +     T  V   +  F  P+ G+  V NAL A  +    
Sbjct: 236 DKSTFGFREEDTVFATTFRSY-MHHATFEVNDSEQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITS-- 381
           G +   + + L        R ++     +G  G   +D  + SN        ++ +T+  
Sbjct: 295 GENYEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VKAVTTSF 345

Query: 382 GRIIVVFGCGGDRDQGKR-PIMGKIALDLAD 411
           G+++V       +D G+R  ++G + L+L D
Sbjct: 346 GQVMV-------KDGGRRIAVLGDM-LELGD 368


>gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
 gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
          Length = 456

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 146/373 (39%), Gaps = 44/373 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR I+ G +F+ + G + DGH FI  A   GA A +  S   L D+        P 
Sbjct: 29  VEFDSRLIEEGDLFLPLKGAR-DGHDFIATAFENGAVATL--SEKELDDY--------PS 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+    L   A     K   ++ AVTG++GK++    +  +             ++T
Sbjct: 78  ILVDDVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKDMLAHLL------------STT 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
             ++         + I L   + ++       V      H  D H L  I +   G  T 
Sbjct: 126 YKTYKTQGNYN--NEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQPKVGIVTL 183

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H+++ +++      KM++   +  KE   +I   D    + +    N    V+  G
Sbjct: 184 IGEAHLEFFKSRHEIAKGKMQIANGM--KEGGLLIVPADKIINDFLPSQQN----VVRFG 237

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              + I L K+     K  +T      D     P+ G++   NA++AA + +  G+    
Sbjct: 238 -PDEDIFLTKLE--ERKDSLTFETNFLDNAIDLPVTGKYNATNAMIAAYVALKEGVTQDK 294

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVV 387
           + +    L +   R E+    + G  I  D Y     ++ +IL+   TI     GR + V
Sbjct: 295 IQKAFATLELTRNRTEWKKAKN-GADILSDVYNANPTAMRLILETFSTIPFNEKGRKLAV 353

Query: 388 FG----CGGDRDQ 396
                  G D  Q
Sbjct: 354 LADMKELGADSKQ 366


>gi|300741266|ref|ZP_07071287.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
 gi|300380451|gb|EFJ77013.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
          Length = 486

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 155/378 (41%), Gaps = 46/378 (12%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRS 140
           S  I  + P L+    +    L  S           ++AV GT GKS+ +S +  +  + 
Sbjct: 86  STAIHEDNPELIAARAQNLRVLHRSEALAAAMGSSQVVAVAGTHGKSTTSSMIAVMLDKL 145

Query: 141 GL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G   SF +G  + I+ +  + RL               + +G   V+    S G      
Sbjct: 146 GFHPSFAVG--TVIAGYGSNARLGA-------------TGEGSWFVAEADESDGSFVRYQ 190

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             I ++    TN+  DH+D+++T +  + A  R    + P       + DD  ++ + +R
Sbjct: 191 PAIAVV----TNVEPDHLDFYETPERVYEAFNRFVASMAPGGVLVTCW-DDEGARALAER 245

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS---------VEGKDFDFLFPLPGE 309
           A +AG  V++ G   +  + + ++ +  ++   T+           EG+  D    +PG 
Sbjct: 246 ARDAGIEVVTYGQSTEADLRVSRITSHGSESSATLRWSFECASKHYEGEQ-DAQLRVPG- 303

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYVDYAHTS 366
             ++N L AA   I   +  A   +    L+   G   RF   G +  G +++ DYAH  
Sbjct: 304 --IHNQLNAAAAFITALLAGAQPEDAAAALYGFGGADRRFTLRG-DVAGIKVFDDYAHHP 360

Query: 367 NSLEMILKNIRTITSGR-IIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   L+  RT+  G  + VVF      R Q       + AL  AD + V D  P  E 
Sbjct: 361 TEVFRALETGRTVADGHNLYVVFQPHLFSRTQEFAADFAQ-ALSKADRSYVLDIYPAREL 419

Query: 425 P-EKIRAEIIHGIPGFIE 441
           P E + +E+I G  GF E
Sbjct: 420 PIEGVTSELITGA-GFSE 436


>gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 450

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 18/146 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               +L V + R+ L   A R  G   H E ++ +TG+ GK++  +F  Q+   S +   
Sbjct: 81  ----LLRVADPREALRA-AGRTQGALFHGE-VIGITGSVGKTTTKNFANQLL--SSVYKV 132

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLA 171
            + P S       +++LT P  + +A
Sbjct: 133 FMSPKS------YNSQLTLPLSVLMA 152


>gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
 gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
          Length = 826

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 164/369 (44%), Gaps = 36/369 (9%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++  I+ V +DSR +      +F A+   + DG  +IP+  A+G    VV      +D+ 
Sbjct: 20  KDANISFVLTDSRSLCFPEETLFFALKTERNDGQNYIPELYARGVRNFVVEVV--PEDW- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           AT   ++  L V  + + L   A R   ++   I+ +TG++GK+ V  ++ Q      L 
Sbjct: 77  ATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSNGKTMVKEWLYQ------LL 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           S Q+  T +  S+  ++++  P  + L   L+  +  GV    +  S  G      D I+
Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVLL---LNENTQVGVFEAGI--SQPGEMMALRDIIQ 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHN 262
              G FT LG  H +   + +A  + K++LF      ++ AI+Y AD+    + + +   
Sbjct: 184 PTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH-----DTEAIVYSADNEVMAQCLSQYDY 238

Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGK---DFDFLFPLPGEFQVYNALV 317
            G ++  SV       ++K   AI  K  + T+S   K   +  +  P   +  V N++ 
Sbjct: 239 KGQKLDWSVKNTEAAFYIK---AIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVENSIT 295

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK-- 374
            A + + +G+  A + E + +L  V  R E V     G  +  D Y    NSL++ L   
Sbjct: 296 CAVVSLHLGLTPATISERMAQLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIALDFM 354

Query: 375 NIRTITSGR 383
           N R    GR
Sbjct: 355 NRRPDHKGR 363


>gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
 gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
          Length = 473

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 34/247 (13%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R    V +DSR ++ G +FVA  G + DGH +   A+  GA A++           AT  
Sbjct: 26  RVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAAGAVGAGAVAVL-----------ATRP 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P +VVD+    L   A  +  +    ++A+TG++GK+S    + Q+  R G + +  
Sbjct: 75  LGVPAIVVDDVTAALGALARTVVKRLGTTVIAMTGSTGKTSTKDLIAQLLSRRGPTVWPP 134

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHR-LDGIKLI 205
           G          +N +  P        L+ L  ++   H+ +E  + G+   R L  +   
Sbjct: 135 GNL--------NNEIGLP--------LTALRVTRDTRHLVLEMGARGIGHIRYLTSLTPP 178

Query: 206 A-GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           + G   N+G  HI     ++    AK  + E  LP+   A++ ADD   + +  R     
Sbjct: 179 SIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEA-LPESGLAVLNADDPLVRGMAPRTR--- 234

Query: 265 CRVLSVG 271
            RVL  G
Sbjct: 235 ARVLLFG 241


>gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 458

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 152/365 (41%), Gaps = 35/365 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I+ G +F+A+ G K DGH F+ +A  +GA A VVS              N P+
Sbjct: 29  ISTDTRSIKKGDLFIALKGKKFDGHDFLHEAFLKGAVAAVVSEDK---------YRNFPL 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ++V +T K L   AS        N  ++ +TG+ GK++    +  +    G+S    G  
Sbjct: 80  IIVQDTLKALHNMASYYIRNILVNAKVITITGSVGKTTTKDMLNTVLLHYGVSHVNEGNL 139

Query: 151 STISSFAQDNRLTTPSPIYLA-KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   +N +  P  I  A +   YL    +  + +  +    +  ++    +     
Sbjct: 140 --------NNNIGLPFTILKAPEDCQYL----ILEIGMSRAGEIKELSKISNPDIAV--I 185

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   H++   +      AK+ +    +      ++  D+ +   ++    NA   V+S
Sbjct: 186 TNIEPAHVENFSSLLDIAQAKLEILHG-MKNNGTLVLNKDNEHYDYLLS---NANRNVVS 241

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G  +   + L ++    N   + I +  G+  +   P+ GE   Y+ALV   +  ++ +
Sbjct: 242 FGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNCNLPVKGEHFAYSALVVTAVLQSLEL 301

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384
           D + +   LE   V  GR         G  +++    Y     S++  ++ + T ++ R 
Sbjct: 302 DLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIRTLGTYSNLRK 361

Query: 385 IVVFG 389
           + + G
Sbjct: 362 VALLG 366


>gi|304321497|ref|YP_003855140.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
 gi|303300399|gb|ADM09998.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
          Length = 473

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 25/195 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+  +H+D H    A   A    F   LP    A +  D    + ++ R  +   R
Sbjct: 188 GVITNIDPEHLD-HYGDFAGVRAAFDQFVANLPFYGFAAVCLDHPEVQALVGRVTDR--R 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-------------PLPGEFQVY 313
           +++ G+  +        A    + +  + EG  FD +F             P+PG   V 
Sbjct: 245 LITYGFNPQ--------ADVRAENLDPTEEGSRFDIIFRKDDIVRLEGITLPMPGRHNVL 296

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA +   +G+    + +   +   V  RF  VG   RG RI  DY H    +   L
Sbjct: 297 NALAAAIVAREMGVPEDAIRDGFARFRGVRRRFTEVG-KYRGARIIDDYGHHPVEIAATL 355

Query: 374 KNIRTITSGRIIVVF 388
              RT+  GR+I V 
Sbjct: 356 SAARTVARGRVIAVM 370


>gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
 gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
          Length = 446

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 31/242 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R IQ G +F+A+ G   D + FI +A  QGA   VV+           +++  P+
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A     + P   + VTG+ GK++  + +  + ++ G         ++
Sbjct: 76  IFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209
             SF  +N +  P        L+ L  +   H +V    ++H  +   L G+ K      
Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAII 179

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G  H++   + +    AK  +FE  L  +  A+I  DD +++   + AH+   R++S
Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236

Query: 270 VG 271
            G
Sbjct: 237 FG 238


>gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 456

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V              +  P 
Sbjct: 28  VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 79

Query: 93  LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+   +     +   P  + AVTG+SGK++V   +  I +  G
Sbjct: 80  LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 129


>gi|309812705|ref|ZP_07706449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
 gi|308433400|gb|EFP57288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
          Length = 470

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 133/322 (41%), Gaps = 66/322 (20%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R    V +DSR   AG ++VA VG   DGH F+P A+A GA  ++   A           
Sbjct: 23  RITGPVVTDSRECAAGSLYVARVGEHADGHDFVPAALAVGAAGVLGERAV---------- 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSS--------VASFVQQICQ 138
                +VVD+     +  A  +  + P   I+ +TG+SGK+S        +A F   I  
Sbjct: 73  DGASCVVVDDVELAFAEVARAVVDRAPNLQIVGITGSSGKTSTKDLLGAVLARFAPTIAP 132

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              L+S ++G   T+    +  R       YL   ++ + + GV H++            
Sbjct: 133 YGSLNS-EVGVPLTVCRIDEATR-------YL---VAEMGASGVGHIAY----------- 170

Query: 199 LDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              +  IA    G   N+G+ H+    + +A    K  L E  LP++  AI+  DD+  +
Sbjct: 171 ---LTKIAPPSIGIVLNVGQAHMGEFGSVEAIARTKGELVEA-LPQDGVAILNVDDSRVR 226

Query: 255 EVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  R      +V+ VG      Y+   + + +      + +  ++    + D    L G
Sbjct: 227 AMASRTQ---AKVILVGLGEDADYRATDVSIDEA----GRPRYHLTCPLGEADVRLALVG 279

Query: 309 EFQVYNAL----VAAGLCIAIG 326
           E QV N+L     A  L +A+G
Sbjct: 280 EHQVGNSLSVIAAATSLGLALG 301


>gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 456

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 140/355 (39%), Gaps = 54/355 (15%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K++  L NQ   F           +S DSR I    +F+AI G   DGH F+ + I +G 
Sbjct: 16  KNWDNLTNQFQSFK---------NISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           +A+V+     +Q+    +    P   V +T +     A  L+ +   NI  + +TG+ GK
Sbjct: 67  KAVVIKEG--MQNL---LPYKFPFWTVPDTLEAFQKLA--LFKRRKLNIPVVGITGSVGK 119

Query: 127 SSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           ++    + ++ ++ G   LS         +     D+     + I        +  +G+ 
Sbjct: 120 TTTKEMMGEVLKQLGKIKLSQLNFNNEIGVGLTILDSDFKDKTLIL------EMGMRGLG 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +        L +     I +I    TN+G  HI    +++    AK  + + L PK   
Sbjct: 174 QI------ENLSKFSEPDIAVI----TNIGSSHIGILGSKENITYAKCEITKHLNPK-GV 222

Query: 244 AIIYADDAYSKEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            II A+D + +E +KR  N       +L    + + ++   +   +N+   ++ +E K F
Sbjct: 223 VIIPANDLFLEETLKRNWNGRIIKVDLLDKNQKAQSLNKTNLQGFYNRSNNSVIIEDKIF 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +  F   G    +N L    +   +GI                 +F FV  N R 
Sbjct: 283 EISF--QGFHNAFNFLFVYAVAKELGIKFK-----------DTNKFNFVSLNGRN 324


>gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida BIRD-1]
          Length = 455

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR + AG +FVA+ G + DGH ++    A+GA A +V    +  D         P 
Sbjct: 28  VSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVAGVDL--------PQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           L+V + R  L    +       + ++A+TG+SGK++V   +  I +  GL
Sbjct: 80  LLVKDCRVALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGL 129


>gi|237793438|ref|YP_002860990.1| cyanophycin synthetase [Clostridium botulinum Ba4 str. 657]
 gi|229264115|gb|ACQ55148.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Ba4 str. 657]
          Length = 873

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 51/359 (14%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +S  ++G T+T   +  +  +          A + L+++ V    +E +  GL +  L  
Sbjct: 501 ISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIKAGLPY 560

Query: 202 IKLIAGSFTNLGRDHI---DYHQTQQ-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH+   D +  +  AY  A   L  E + K+   +I ADD  S  ++
Sbjct: 561 DLADVGIITNVTEDHLGLGDINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASINII 617

Query: 258 KRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            R  +                    + L +   G  I+LKK+    NK +  I+V     
Sbjct: 618 NRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN---- 669

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH---VVPGRFEFVGTNSRG 355
                L G+  + V NA+ A    IA+G+D   + + LE  +     PGRF     N  G
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFNNEEQNPGRFNMY--NVHG 727

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   +
Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIYI 787

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464
            +D  +    +   A+++    G +E G          +  EA++ AIE  N  D++++
Sbjct: 788 KEDRDKRGRKDGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVIM 844


>gi|226947343|ref|YP_002802434.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2
           str. Kyoto]
 gi|226840998|gb|ACO83664.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2
           str. Kyoto]
          Length = 873

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 51/359 (14%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +S  ++G T+T   +  +  +          A + L+++ V    +E +  GL +  L  
Sbjct: 501 ISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIKAGLPY 560

Query: 202 IKLIAGSFTNLGRDHI---DYHQTQQ-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH+   D +  +  AY  A   L  E + K+   +I ADD  S  ++
Sbjct: 561 DLADVGIITNVTEDHLGLGDINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASINII 617

Query: 258 KRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            R  +                    + L +   G  I+LKK+    NK +  I+V     
Sbjct: 618 NRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN---- 669

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH---VVPGRFEFVGTNSRG 355
                L G+  + V NA+ A    IA+G+D   + + LE  +     PGRF     N  G
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFNNEEQNPGRFNMY--NVHG 727

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   +
Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIYI 787

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464
            +D  +    +   A+++    G +E G          +  EA++ AIE  N  D++++
Sbjct: 788 KEDRDKRGRKDGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVIM 844


>gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70]
 gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70s]
 gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis Sweden2]
 gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/150]
          Length = 450

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 18/146 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               +L V + R+ L   A R  G   H E ++ +TG+ GK++  +F  Q+   S +   
Sbjct: 81  ----LLRVADPREALRA-AGRTQGALFHGE-VIGITGSVGKTTTKNFANQLL--SSVYKV 132

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLA 171
            + P S       +++LT P  + +A
Sbjct: 133 FMSPKS------YNSQLTLPLSVLMA 152


>gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
 gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
          Length = 478

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 21/289 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR I  G  + AI G+  DGH F+  A+  G    V++     Q   A    +
Sbjct: 27  VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGVAVIA-----QSHRAEFPDD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVV +    L   A     +    I+AVTG+ GK+S    ++ + Q  G +      
Sbjct: 82  LPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGKTSTKEALRTVLQAQGKTH----- 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+     SS       +  +  G  +  +  ++      
Sbjct: 137 -ASAASF--NNHWGV--PLSLARC---PSSARFAIFEIGMNHAGEIEPLVKLVRPHLAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           T +   H+++    +A  +AK  +F  L P +  AI+  D++    +  +A  +G  R++
Sbjct: 189 TTVEPVHLEFFSGIEAIADAKAEIFTGLEP-DGAAILNIDNSQFARLRDKAKASGVSRIV 247

Query: 269 SVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + G   K        A+H +   V   +   D  +   +PG     N+L
Sbjct: 248 TFGENAKADARLLDVALHGECSAVHADLLHHDVTYKVGVPGRHMAMNSL 296


>gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 456

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V              +  P 
Sbjct: 28  VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 79

Query: 93  LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+   +     +   P  + AVTG+SGK++V   +  I +  G
Sbjct: 80  LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 129


>gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 460

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 144/352 (40%), Gaps = 44/352 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR   +G ++VA VG   DGH FI  AIA GA   +V++       S     +T I
Sbjct: 27  VETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVCAIVTNP------SIGNPEHTRI 80

Query: 93  LVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           LV D T   L L A     RL       I+ +TG+ GK++       I  +         
Sbjct: 81  LVEDATYA-LGLLAKVHIERLRATGDLRIVGITGSVGKTTTKDLTAGILAK-------FA 132

Query: 149 PT-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDGI 202
           PT + ++SF  +N +  P + +   +   YL     + G+ H+       GL    L G+
Sbjct: 133 PTVAPVASF--NNEVGMPLTALKADENTRYLVLEMGASGIGHLEYLT---GLVSPDL-GV 186

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH 261
           +L      ++GR H+    +      AK  L E +  KE+  +I   DD     +   AH
Sbjct: 187 EL------SVGRAHLGGFGSVAGLARAKAELVEGV--KENGLVILNLDDPNVAAMETVAH 238

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  ++G +   I+ + V     +         G+       L G  QV NAL A  
Sbjct: 239 TPVVYFSALGNEKADIYARNVTLDEFSHASFEAVTTGEVIPVHLGLVGAHQVNNALAAIS 298

Query: 321 LCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +C   G++   ++  L  +    P R   V   SRG   ++D ++ +N   M
Sbjct: 299 ICQGFGLELPEIVAALNGMKAASPHRMSIV--ESRGAT-FIDDSYNANPDSM 347


>gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA1]
          Length = 485

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P LVV
Sbjct: 31  DTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LPHLVV 81

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
           D+ +  LS  A  +     E     +A+TG+SGK+S    + QI     L +F  GPT +
Sbjct: 82  DDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQI-----LETF--GPTVA 134

Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186
            + SF  +N +  P     S    +  +S + ++G+ H+S
Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172


>gi|313837456|gb|EFS75170.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA2]
 gi|314929334|gb|EFS93165.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL044PA1]
 gi|314971663|gb|EFT15761.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA3]
 gi|328906998|gb|EGG26764.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium sp. P08]
          Length = 471

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 18/236 (7%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267
            TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  + G  RV
Sbjct: 188 ITNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRV 245

Query: 268 LSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIA- 324
           ++ G + +   ++ V   ++ K      V G     L   +PG + + NA  AA  C+  
Sbjct: 246 VTYG-ESEQAEVRLVDLDLNGKAASATLVHGPTQGRLELQVPGRYNLSNA--AAAYCVGS 302

Query: 325 -IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
            +GI    +L  +        RF+ VG       I+ DYAH    L   L   R   +  
Sbjct: 303 LLGISHRDLLAGIASFTGTLRRFQLVG-RVNDVSIFDDYAHHPTELRATLGAARRAVTGQ 361

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
           GR+I  F          R  +G+   AL L D  IV+D  P  EDP   +  E++H
Sbjct: 362 GRVIACFQP--HLFSRTRDFVGEFGSALTLVDRVIVSDIYPAREDPIPGVTGELVH 415


>gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 456

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 13/112 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V      ++    +    P 
Sbjct: 28  VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVE-----REVQGAV---LPQ 79

Query: 93  LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+   +     +   P  + AVTG+SGK++V   +  I +  G
Sbjct: 80  LVVLDTRKALAQLGAMNRNAFLDRP--VAAVTGSSGKTTVKEMLASILRTRG 129


>gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA1]
 gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA1]
 gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA2]
 gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA2]
 gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA1]
 gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA1]
 gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA2]
 gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA1]
 gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA2]
 gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA1]
 gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA2]
 gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL086PA1]
 gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA4]
 gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA1]
 gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA3]
 gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA3]
 gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL067PA1]
 gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA1]
 gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA1]
 gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA2]
 gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA1]
 gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA1]
 gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA2]
 gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA2]
 gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA3]
 gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL078PA1]
 gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA2]
 gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA3]
 gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA1]
 gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA2]
 gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA1]
 gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA2]
 gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL097PA1]
 gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA3]
 gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA2]
 gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA3]
 gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL092PA1]
 gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA2]
 gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA1]
 gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL020PA1]
 gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA2]
 gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes 266]
          Length = 485

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P LVV
Sbjct: 31  DTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LPHLVV 81

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
           D+ +  LS  A  +     E     +A+TG+SGK+S    + QI     L +F  GPT +
Sbjct: 82  DDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQI-----LETF--GPTVA 134

Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186
            + SF  +N +  P     S    +  +S + ++G+ H+S
Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172


>gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL074PA1]
 gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA1]
 gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL007PA1]
 gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL056PA1]
 gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA1]
 gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL045PA1]
 gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA1]
 gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL038PA1]
 gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA2]
 gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA2]
 gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA1]
 gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL099PA1]
          Length = 485

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P LVV
Sbjct: 31  DTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LPHLVV 81

Query: 96  DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
           D+ +  LS  A  +     E     +A+TG+SGK+S    + QI     L +F  GPT +
Sbjct: 82  DDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQI-----LETF--GPTVA 134

Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186
            + SF  +N +  P     S    +  +S + ++G+ H+S
Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172


>gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
 gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
          Length = 461

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 124/305 (40%), Gaps = 28/305 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  +    FVAIVG   D H +I  A   G    +V+    +      I+S+  I+ V
Sbjct: 32  DSRLAKEDTAFVAIVGENNDAHKYIGSAYDLGCRVFIVNKGKDID-----IKSDMNIIEV 86

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+T K L         K     + +TG+ GK++    V      + LSS      +T+ +
Sbjct: 87  DDTSKALGDIGHYYKKKFDILFIGITGSVGKTTTRDMVY-----AALSS----ERATLKN 137

Query: 156 FAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
               +N    P  ++     +  SS     + +  S  G  ++  + +       +N+G 
Sbjct: 138 EKNFNNHFGVPLTLF-----NLDSSYECAVIEMGMSGFGEIEYLANMVNPKVAVISNIGL 192

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ- 273
            H++   +Q+  F AKM +    + K +  ++  DD +   +  R       +++ G++ 
Sbjct: 193 SHVENLGSQEGIFKAKMEITTGFV-KGNTLVVNGDDKFLSTL--RDAERDYDLITFGFEK 249

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              I+        +  +   SV G       P  G+  +YNA+ A    IA+G    + +
Sbjct: 250 NNDIYCVAYDMTEDSIEFECSVMGNIEKIFIPTVGKHNIYNAMAA----IAVGTVEGISM 305

Query: 334 EHLEK 338
           E +++
Sbjct: 306 EGIKR 310


>gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington]
 gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl ligase [Rickettsia typhi]
 gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington]
          Length = 448

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 141/346 (40%), Gaps = 43/346 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V  +S+ ++ G +F+A+ GN+ DGH +I  AI +GA A++VS    + D         
Sbjct: 23  NAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--------RSGL 142
            I++V+++   L   A           +A+TG+ GK+S    ++ + Q        R   
Sbjct: 75  KIILVNDSFNALQKMALYKRKNSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +++ +G    ++S A D    T   I+           G+ H   +     L Q     I
Sbjct: 135 NNY-LGLLINLASMADD----TEYAIF---------ELGMNH---KGEISELVQILKPNI 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +I    +N+   H+++  + +    AK  +F+     +   I  +++ Y+K +    + 
Sbjct: 178 AMI----SNISEAHLEFFNSIEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNL 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGL 321
           +   + S G       L     +  +  +   +  K  D   P +P  F   N      L
Sbjct: 234 SITNIYSFGRSKASAELIFYKTLGEQVHLKYYINNKFIDITIPFIPKHFA--NNYTGVLL 291

Query: 322 CIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            I I G D  +   +L  + +  GR E +  N +  R+  DY + S
Sbjct: 292 IIDILGKDIEIAANYLADISITKGRGEII--NIQNSRVICDYYNAS 335


>gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 377

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V              +  P 
Sbjct: 9   VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 60

Query: 93  LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+   +     +   P  + AVTG+SGK++V   +  I +  G
Sbjct: 61  LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 110


>gi|254375208|ref|ZP_04990688.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
 gi|151572926|gb|EDN38580.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
          Length = 451

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 144/368 (39%), Gaps = 44/368 (11%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA+TGT GK++ +S +  + CQ    SSF +G    +  +A  N                
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGG---VVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L    +I    TN+  DH+    T    +   +  F +
Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            + KES   IY   DD   ++++ + + +   V S G+     + +     I       I
Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G D  F   LPG++ V NA      C+ +G     +   L K+  V  RF+      
Sbjct: 261 RYKGDDLSFKLQLPGKYNVQNATACIIACLDLGFKYEDIHNALIKVTGVARRFDLYTKVI 320

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            G ++ V  DY H    +   +  +R    + +II VF     R    R ++     AL 
Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378

Query: 409 LADIAIVTDDNPRSEDPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD  I+    P     E+I       +I  G+ G++       AI    ++ N+  V++
Sbjct: 379 LADQLILL---PTYSAGEQIIKGAESQDIAKGLSGYLLADGFDHAIYFLEKLANENTVIL 435

Query: 464 VAGKGHET 471
           + G G  T
Sbjct: 436 IQGAGDVT 443


>gi|118496694|ref|YP_897744.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           novicida U112]
 gi|194324001|ref|ZP_03057776.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208780034|ref|ZP_03247377.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
 gi|166224690|sp|A0Q425|MURC_FRATN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118422600|gb|ABK88990.1| UDP-N-acetylmuramate-alanine ligase [Francisella novicida U112]
 gi|194321898|gb|EDX19381.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208744038|gb|EDZ90339.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
          Length = 451

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 144/368 (39%), Gaps = 44/368 (11%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA+TGT GK++ +S +  + CQ    SSF +G    +  +A  N                
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGG---VVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L    +I    TN+  DH+    T    +   +  F +
Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            + KES   IY   DD   ++++ + + +   V S G+     + +     I       I
Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G D  F   LPG++ V NA      C+ +G     +   L K+  V  RF+      
Sbjct: 261 RYKGDDLSFKLQLPGKYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            G ++ V  DY H    +   +  +R    + +II VF     R    R ++     AL 
Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378

Query: 409 LADIAIVTDDNPRSEDPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD  I+    P     E+I       +I  G+ G++       AI    ++ N+  V++
Sbjct: 379 LADQLILL---PTYSAGEQIIKGAESQDIAKGLSGYLLADGFDHAIYFLEKLANENTVIL 435

Query: 464 VAGKGHET 471
           + G G  T
Sbjct: 436 IQGAGDVT 443


>gi|85858527|ref|YP_460729.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
 gi|109892747|sp|Q2LR47|MURC_SYNAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85721618|gb|ABC76561.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
          Length = 480

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 28/237 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAH----- 261
           TN+ R+H+D+++  +   +A ++ F  ++P    A++  DD + K ++   KR       
Sbjct: 196 TNIDREHLDFYRGIEDIKDAFLQ-FANIVPFYGSAVLCLDDPHIKTILSDIKRKTITYGM 254

Query: 262 --NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              A  R   + + G     +          VT+SV           PG F VYN+L   
Sbjct: 255 EPAADYRAQELRFNGAVTEYELYYRTECLGSVTLSV-----------PGMFNVYNSLATV 303

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   + +    + + L+    V  R E  G  + G  +  DY H    +   L   R +
Sbjct: 304 AVARELDMTFPDIQQGLKSYVGVGRRLEVKGKIA-GVTVVDDYGHHPTEISATLAAARQV 362

Query: 380 TSGRIIVVFGCGG-DRDQGK-RPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433
              R+IVVF      R Q   R  +G  A   AD+ IVTD  P SEDP E + AE +
Sbjct: 363 WKNRMIVVFQPHRYTRTQALFREFLG--AFTEADLLIVTDIYPASEDPIEGVTAEAL 417


>gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 452

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VV
Sbjct: 8   FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 68  SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 452

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VV
Sbjct: 8   FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 68  SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA19]
 gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 452

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VV
Sbjct: 8   FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 68  SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|164686367|ref|ZP_02210397.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
 gi|164601969|gb|EDQ95434.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
          Length = 451

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 118/261 (45%), Gaps = 26/261 (9%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL  DH++ H T + Y  AK  +F+     +   + Y D+A       RA ++ C    +
Sbjct: 185 NLSPDHLNRHHTMENYIMAKANIFKNQDKNDFTILNYDDEAV------RALSSKCNSQVL 238

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIG 326
            +  K   ++ +  ++N+  + I+++ K+   L      LPG   + N + A       G
Sbjct: 239 YFSRKHQGVRGI-YLNNEGNIVINID-KEIVLLHEDELSLPGGHNLENCMAATLAAYVSG 296

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ID  ++ E L+    V  R E+V T    G +YV+ +  +N        I+ +TS +  +
Sbjct: 297 IDIEVIREVLKTFKAVEHRLEYVKT--VNGVMYVNDSKGTNP----DSTIKAVTSYKKPI 350

Query: 387 VFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGN 444
           +   GG D+D     ++     ++  + ++ +   + E   K +  EII  +       N
Sbjct: 351 ILIAGGYDKDSTYDELLDIAKQNVKALVLLGETASKIEACAKTKGFEIIKRVQ------N 404

Query: 445 RIEAIRTAIEMLNKQDVLVVA 465
             EA+ T+ E+ N+ DV++++
Sbjct: 405 MKEAVETSAELANEGDVVLLS 425


>gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
 gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae]
 gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
          Length = 428

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 145/364 (39%), Gaps = 36/364 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-SSAYSLQDFSATIR 87
           K   +S D+R I+ G +F AI G   D + F  +A+  GA  +V+ + +Y + D   TI 
Sbjct: 12  KCQSLSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYFIDD--RTIL 69

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N  +  +    KF      R Y K P  I+A+TG++GK++    +  +  +   +   I
Sbjct: 70  VNNSLETLQELSKF-----HRNYLKLP--IVALTGSNGKTTTKELINVVLSKKFKTKATI 122

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G          +N +  P  +     LS+     +  V + A+     +   +  +   G
Sbjct: 123 GNL--------NNHIGVPLTL-----LSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYG 169

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN G+ H++     Q     K  +++ LL       +  +D    E      + G + 
Sbjct: 170 YITNFGKAHLEGFGGVQGVIEGKSEMYQYLLKNNKTVFVNLEDPIQIE-----KSTGIKN 224

Query: 268 LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            + G   +   LK    I N Q    + +E +DF     L G +   N   A  +     
Sbjct: 225 FTFGVNKESADLK----IKNIQANPFVVIEYEDFKVESHLIGLYNANNINAAVSIGKYFN 280

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           ++ AL+ E +E       R + +   S    I +D Y    +S+ + + N   + +   I
Sbjct: 281 VEDALIKEAIENYIPANNRSQLLKKGSN--EIILDAYNANPSSMAVAITNFLQLENQNKI 338

Query: 386 VVFG 389
           ++ G
Sbjct: 339 MILG 342


>gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
 gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           35/02]
 gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI18]
 gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA6140]
 gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID24-1]
 gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI2]
 gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
          Length = 452

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VV
Sbjct: 8   FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 68  SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|30248927|ref|NP_840997.1| cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
 gi|30138544|emb|CAD84834.1| Cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 856

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 132/337 (39%), Gaps = 34/337 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LFA     + P  ++AVTGT+GK++    +  + + + L   ++G   T   F     + 
Sbjct: 460 LFAPGENARIP--VIAVTGTNGKTTTVRLIANMLENNRL---RVGIACTDGVFVNGQCVD 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQ- 221
           T        A + L    V    +E +  G+ +  L          TN+GR DH+     
Sbjct: 515 TGDCSGPQSARNILFHPEVDAAVLETARGGILREGLGFDYCDVAVVTNIGRGDHLGLANI 574

Query: 222 -TQQAYFNAKMRLFEELLPKESPAIIYADDAY----------SKEVMKRAHNAGCRVLSV 270
            T +     K  + E + PK   A++ ADD            +     R H     +L  
Sbjct: 575 NTAEELAAVKRTIVENVNPKTGVAVLNADDPLVLGMASHCPGNVTFFSRNHRHPV-ILEQ 633

Query: 271 GYQGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             QGK +     H   V     ++++++S      + +      FQ+ NA+ + G  +AI
Sbjct: 634 RVQGKRVIYMEDHHIIVAEAGTERRISLSQIRLTKNGMI----SFQIDNAMASIGAGLAI 689

Query: 326 GIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +D   +   L         VPGRF     N R   +  DY H  +++E ++  I  I +
Sbjct: 690 ELDWTTICAGLADFVSDAQTVPGRFNLF--NYREATLIADYGHNPDAMEALVCAIDHIPA 747

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +  VV    GDR      +  +I  D+ D  ++  D
Sbjct: 748 KKRTVVISAAGDRRNEDIRLQTRILGDVFDEVVLFQD 784


>gi|313904465|ref|ZP_07837842.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
 gi|313470801|gb|EFR66126.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
          Length = 462

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 24/189 (12%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           ++  DH+D+ +  +   N+  R F ELLP +   II ADD   K + K   +  C V++ 
Sbjct: 186 DIDADHLDFFKDLEDIRNS-FRKFAELLPADGTLIINADDPAFKMITK---DLPCEVITY 241

Query: 271 ------GYQGKFIHLKKVC-----AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  Y    I   ++      A++  + +         +F   +PG   V NAL   
Sbjct: 242 SLSNIGNYTADMITYDELGHASFRALYKGEPIG--------NFALQVPGSHNVSNALAVI 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L   +GID+  + +  +  H    RFE  G    G  +  DYAH    ++  L   R +
Sbjct: 294 ALAEKLGIDADTIQKGFDSFHGTNRRFEQKG-EMNGATVIDDYAHHPTEIKATLNTARRV 352

Query: 380 TSGRIIVVF 388
               I  VF
Sbjct: 353 PHKTIWCVF 361


>gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 493

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SDSR ++ G +FVAI G + DGH F+ +  AQGA A +V   + + D      +  P +V
Sbjct: 35  SDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVD--HEVAD------AGVPQIV 86

Query: 95  VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           VD+T + L   A       R  G  P  ++ +TG+ GK++    +  +    G +   +G
Sbjct: 87  VDDTVRALGELAKHNLERRRAIGS-PFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVG 145


>gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
 gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
          Length = 499

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SDSR ++ G +FVAI G + DGH F+ +  AQGA A +V   + + D      +  P +V
Sbjct: 41  SDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVD--HEVAD------AGVPQIV 92

Query: 95  VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           VD+T + L   A       R  G  P  ++ +TG+ GK++    +  +    G +   +G
Sbjct: 93  VDDTVRALGELAKHNLERRRAIGS-PFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVG 151


>gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           6-diaminopimelate--D-alanyl ligase [Rickettsia
           montanensis]
          Length = 449

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 156/384 (40%), Gaps = 71/384 (18%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKQVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143
            I++VD+  + L   A           + +TG+ GK+S    ++ + Q         G  
Sbjct: 75  KIILVDDCFEALQKMALYKRENSKAKFIVITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + ++G    ++S A D    T   I+           G+ H        G  +  +  +K
Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258
                 TN+   H+++  + +    AK  +F     K   A+I AD + Y+K   ++K  
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233

Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308
                    R+      ++     G+ ++LK              +  K  D   P +P 
Sbjct: 234 SITDIHSFGRSSKTSAELILYENLGEQVYLK------------YKINNKVLDVTIPFIPR 281

Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            F + Y  ++   L I I G D  +   HL  +    GR E +  N +  R+  DY + S
Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336

Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389
             S++  L+ ++ + +     + G
Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360


>gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 468

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 65/114 (57%), Gaps = 12/114 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS----SAYSL--QDFSATI 86
           + +DSR I+ G IF+A+ GN+ DGH FI  AI +GA+ +++     S ++   +D S   
Sbjct: 33  IKTDSRKIEKGDIFIALKGNRSDGHSFISDAINRGAKGVILKDEEMSKFTSFNKDISFFG 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
             +  + +++ + ++L+  +S         I+AVTG+ GK++    + ++ +R+
Sbjct: 93  VPSPDVAILEASERYLAGLSSL------REIVAVTGSVGKTTTKEAIGKVLERT 140


>gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 516

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 141/334 (42%), Gaps = 55/334 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR + AG +FVA+ G + DGH +  +A+A GA   ++S    + D    +       + 
Sbjct: 34  DSRKVTAGGLFVALNGARVDGHDYAAKAVADGAVGCLLS--RPVMDGMRPVPGVVVPPIP 91

Query: 96  DNTRKFLS--------------LFASRLYGKHPENIL--------AVTGTSGKSSVASFV 133
           +N RK  S              L A  L  +H  +IL         VTG++GK+S    +
Sbjct: 92  ENERKRDSYATENDVDGAVAAVLRALGLIARHVIDILTQKGLVVVGVTGSAGKTSTKDMM 151

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVE 188
             I   +G +   + P  +      +N +  P       A     +S +S++G+ H++  
Sbjct: 152 ATIFSAAGNT---VAPPGSF-----NNEIGHPYTALKCTAETQFLISEMSARGIGHIAHL 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A+   +   ++ G++L      N+G  H+    +Q A   AK  L E  LP+   A++ A
Sbjct: 204 AA---IAPPKI-GVEL------NVGTAHVGEFGSQTAIAQAKGELVEA-LPENGEAVLNA 252

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNK-QQVTISVEGKDF-DFLF 304
           DD    ++  R      RV S         ++   +   HN   +  + +E ++      
Sbjct: 253 DDPLVAQMASRTR---ARVTSYSAVSTAAAVYATDITFDHNACARFRLHIEDENVHQITL 309

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            + GE QV NAL AA    A GIDS  +   L +
Sbjct: 310 LVAGEHQVSNALAAAAAAHAAGIDSETIAHSLNR 343


>gi|322691437|ref|YP_004221007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456293|dbj|BAJ66915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 517

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 104/478 (21%), Positives = 190/478 (39%), Gaps = 84/478 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A V  + YS         +  P L+V++ RK +SL ++  YG +P+N L V G +G 
Sbjct: 75  GLAAYVAETEYSAA-------TAAPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126

Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175
                 + F Q +     +++   G  +  SS           ++ LTTP  +   + + 
Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
             +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K ++
Sbjct: 182 EAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQI 241

Query: 234 FEELLPKESPAIIYADDAYSKEVMKR----------------AHNAGCRVLSVGYQGKFI 277
                   + +++   D+   ++++                 A NAG     V +     
Sbjct: 242 I-----ANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTA 296

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEH 335
           H     A  ++   T+       D+   + G+F   NA  A  +  A G+  D A  L  
Sbjct: 297 HASFHIADGDQ---TLG------DYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDADALHA 347

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGG 392
           +E + +  GR E            VDYAH   S+  +L  +       + RI +V G  G
Sbjct: 348 IESVRIA-GRMEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAG 406

Query: 393 DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------G 443
           ++   +R  + + A + +A+     +D     D E    +I   + G+I           
Sbjct: 407 NKAYDRRKEIVEAAENRIANFIFTAEDT----DTEPF-IDICMEMQGYITNKDVASTVIS 461

Query: 444 NRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495
           +R  AI  AI       ++ ++L++ GKG+E    + +  K +  D D  ++  + GL
Sbjct: 462 DRPTAITNAIYDARAHADRFNILLIIGKGNE--RWIKDHHKHVPFDGDDHVVERMFGL 517


>gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 451

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 132/322 (40%), Gaps = 33/322 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + EV  DSR +  G +FVA+ G + DGH FI  A  +GA A +V      +D    +   
Sbjct: 24  VGEVGLDSRGLAPGGLFVAMAGERVDGHDFIADAARRGAAAALVE-----RDGDWPL--- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V +TR  L    +    +    ++ VTG++GK++V   +  I  R G        
Sbjct: 76  -PVVRVADTRAALQALGAAWRRRLAARVVGVTGSNGKTTVKEMIAAILARRG-------- 126

Query: 150 TSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-A 206
            +T+++    +N L  P + + L +   Y        + + A++ G +  RL  I     
Sbjct: 127 -ATLATRGNLNNELGVPLTLLRLDREHRYAV------IEMGANAPG-EIARLTAIAAPEV 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN G  H++          AK  LF   LP    A++ ADD  +        +  C 
Sbjct: 179 AVITNAGPAHLEGFGDLAGVARAKGELFLG-LPDAGVAVVNADDPQAPTWYALVGDRRCL 237

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
               G         +    H + Q+     G       PLPG   V NAL AA + +A+ 
Sbjct: 238 RFGRGADADVRATAETAGGHFELQIP----GGRHPVRLPLPGRHNVMNALAAAAVAVALE 293

Query: 327 IDSALVLEHLEKLHVVPGRFEF 348
           +    ++  LE    V GR ++
Sbjct: 294 VPLGDIVAGLEACSGVAGRLQW 315


>gi|269127140|ref|YP_003300510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
 gi|268312098|gb|ACY98472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
          Length = 475

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 33/230 (14%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +FVA+ G + DGH F   A A  A A  V +   L D +       P ++V
Sbjct: 33  DSRAVVPGALFVALRGERADGHDF--AAAAVAAGAAGVLAQRPLDDPA------LPAVIV 84

Query: 96  DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STI 153
           D+    L   A  +  + P+  ++ VTG++GK+S    + Q+ +R        GPT +  
Sbjct: 85  DDAVAALGRLAGGVLARLPQVTVVGVTGSAGKTSTKDLIAQVLRRH-------GPTVAAE 137

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLIAGSF 209
            SF  +N +  P  +  A        +   H+ +E  + G+       R+   ++  G  
Sbjct: 138 GSF--NNEIGHPLTVLRA-------DEQTRHLVLEMGARGIGHVAYLCRVAPPRI--GVV 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            N+G  H+     ++A   AK  L E  LP +  A++ ADD   + +  R
Sbjct: 187 LNVGSAHLGEFGDREAIARAKGELVEA-LPADGAAVLNADDPLVRAMAAR 235


>gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
 gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
          Length = 463

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VV
Sbjct: 19  FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 78

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 79  SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 130

Query: 134 QQICQR 139
             + +R
Sbjct: 131 AAVLRR 136


>gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
 gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
          Length = 493

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SDSR ++ G +FVAI G + DGH F+ +  AQGA A +V   + + D      +  P +V
Sbjct: 35  SDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVD--HEVAD------AGVPQIV 86

Query: 95  VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           VD+T + L   A       R  G  P  ++ +TG+ GK++    +  +    G +   +G
Sbjct: 87  VDDTVRALGELAKHNLERRRAIGS-PFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVG 145


>gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei BCC215]
          Length = 300

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSASPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           L V +TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124


>gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 463

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VV
Sbjct: 19  FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 78

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 79  SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 130

Query: 134 QQICQR 139
             + +R
Sbjct: 131 AAVLRR 136


>gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37]
          Length = 447

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 156/395 (39%), Gaps = 53/395 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R  + G +FVA  G   DGH +  QA   GA A++ S   +L           P +VV
Sbjct: 32  DGRQAEPGGLFVAFAGEHVDGHDYAGQAGRAGAVAVLGSRPTTL-----------PTVVV 80

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           ++ R  L   A+ +  +  +   ++ +TG+ GK+S    +  +   +G +   IG  +  
Sbjct: 81  EDARAALQALAAHVVARLRDRLTVVGLTGSQGKTSTKDLLAAVLSHTGSTVATIGSLNNE 140

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                    TTP   +L   +  + ++G+ H++   +   LD               N+G
Sbjct: 141 LGVPLTMLRTTPDTRFL---VLEMGARGIGHIAELTALVALD----------VAVVLNVG 187

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-----------RAHN 262
           + HI    +++A   AK  L + L+P  + AI+ ADD     VM+           RA +
Sbjct: 188 QAHIGEFGSREAIATAKAELLQGLVPGGT-AILNADDPRVL-VMRALTDGPALTFGRAEH 245

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  RVL        + L ++     +   T+           PL G  Q  NA  AA   
Sbjct: 246 AHVRVLD-------LALDRL----GRPAFTLRTADASAPVALPLVGAHQALNASAAAAAG 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A GI   +    L    +   R E  G +     +   Y    +S    L  +  I +G
Sbjct: 295 LAAGIPLDVTAATLATASLSKWRMELRGLSGGVSLLNDSYNANPDSTRAALDALAAIEAG 354

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
           R I V G     GD  + +   +G+ A   AD+ +
Sbjct: 355 RRIAVLGEMRELGDDSEAEHRAIGEYAARAADLVV 389


>gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
 gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
          Length = 463

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VV
Sbjct: 19  FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 78

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 79  SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 130

Query: 134 QQICQR 139
             + +R
Sbjct: 131 AAVLRR 136


>gi|169827841|ref|YP_001697999.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
 gi|168992329|gb|ACA39869.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
          Length = 457

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 17/210 (8%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  H+D     + Y  AK  + E +   +   II ADDA  +++  +      +
Sbjct: 180 GIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRA-DGTLIINADDANIEKISYQKFKG--K 236

Query: 267 VLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           ++  G Q    +  K  AI   H   +  + V    ++   P  GE QVYNAL A   C 
Sbjct: 237 IIKFGLQDSADY--KASAIQFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAIAACS 294

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-T 380
            +G+     +  L     +    EF  T   G    +D   T+N  S+E  LK + T+  
Sbjct: 295 EMGLSIRQAIAGLRSFKQMARHLEF--TTGLGDSTIIDDTWTNNPTSVEAALKVLDTVGK 352

Query: 381 SGRIIVVFG----CGGDRDQGKRPIMGKIA 406
             ++I+V G     G   ++  R I  K+A
Sbjct: 353 EKKVILVLGDIKRLGNFEEKYHREIGSKVA 382


>gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
 gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
          Length = 468

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G             +   + I   G   D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A +   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/11023]
          Length = 450

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 18/146 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               +L V + R+ L   A R  G   H E ++ +TG+ GK++  +F  Q+   S +   
Sbjct: 81  ----LLRVADPREALRA-AGRTQGALFHGE-VIGITGSVGKTTTKNFANQLL--SSVYKV 132

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLA 171
            + P S       +++LT P  + +A
Sbjct: 133 FMSPKS------YNSQLTLPLSVLMA 152


>gi|303242183|ref|ZP_07328672.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
 gi|302590265|gb|EFL60024.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
          Length = 882

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 24/272 (8%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L    +G T+T   +  D  +          A   LS++ +    +E +  GL +  L  
Sbjct: 504 LQGKTVGMTTTSGIYIGDECILKGDNTGFVSARMLLSNKSIDAAVLETARGGLVRKGLGY 563

Query: 202 IKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                G  TN+  DH  ID   T +   +AK  + E + PK   A+I ADD +++  M R
Sbjct: 564 DLADVGVITNVSEDHLGIDGVDTAEDLASAKSLVIEAVKPK-GYAVINADDGFARYFMDR 622

Query: 260 AHNAGCRV------------LSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPL 306
           A +                 +S G +  ++   ++  +  K+ VTI + + KD    F  
Sbjct: 623 AKSKVILFSKDKHSSIMQDHISQGKRAVYLDGGEIFLV--KKGVTIQLAKTKDIPITFGG 680

Query: 307 PGEFQVYNALVAA----GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             E  + N L A     GL + +    A ++  L      PGRF          ++ +DY
Sbjct: 681 ILECNIENCLAAVSALWGLDMPLETIKAGLVSFLPDTSSNPGRFNIFDMGEF--KVMLDY 738

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           +H     E ++K ++ + + R++ + G  GDR
Sbjct: 739 SHNPAGFEEVIKFVKKLEANRLVGIIGMPGDR 770


>gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 461

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 160/397 (40%), Gaps = 51/397 (12%)

Query: 5   DLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           DL   +  E++   ++  P +  +RK+N +  DSR    G +F  I G + D H F+ Q 
Sbjct: 5   DLTIGEMLEILETEAVGVPARTLKRKVN-LCMDSRESAKGVVFWPIKGARFDAHQFVSQM 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVT 121
              GA   VV+      +F    +   P  V D T+  L L     RL+       +A+T
Sbjct: 64  EKDGALMSVVNQTAIDPNF----KMYAP--VEDTTKALLKLAKGYQRLFKLKK---VAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++     + +       S +    +T  +F  +N +  P  ++    L +     
Sbjct: 115 GSNGKTTTKEMTKAVL------SMKYNTHATKGNF--NNHIGVPMTLF---QLKHSHEAA 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           V    VE  + G D+ R   +         TN+G  H++        FN K+ +    L 
Sbjct: 164 V----VEMGTSGPDEIRPLSLATEPDIAVITNIGASHLERLGDLDGVFNEKINITAG-LK 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    I+ ADD    +V    H    +V++ G +   +  +K+    N           D
Sbjct: 219 ENGTLIVNADDERLCKVKATKH---YKVVTFGVRRGVVKPEKLKWTENLCA--------D 267

Query: 300 F-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           F      F+  +PG+  +Y+AL A  +  A+ I    + + L        R E    N+ 
Sbjct: 268 FYVGRTHFVLNVPGDHNLYDALAAIAVGQALRIPKGDIAKALAGFTSTSMRMEI--KNAN 325

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFG 389
           G ++  D Y    +S +M L+ +  +   G+ I V G
Sbjct: 326 GFKVISDCYNANPSSTKMALQTLGNMRVEGKRIAVLG 362


>gi|148257421|ref|YP_001242006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. BTAi1]
 gi|146409594|gb|ABQ38100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium sp.
           BTAi1]
          Length = 466

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 22/153 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + Q +G  +   G   T     +  R+               
Sbjct: 117 VAITGTNGKSTTTALIAHLMQTAGYDTQLGGNIGTAILSLEPPRM--------------- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  HV +E SS+ +D      +    G   N+  DHID H T + Y   K RL   +
Sbjct: 162 ---GRVHV-IEMSSYQIDL--TPSLDPTVGILLNVSEDHIDRHGTIENYAAVKERLVAGV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            P E  AII  DD +S+ +  R   AG RV+ V
Sbjct: 216 KP-EGTAIIGVDDGFSRAIADRLDQAGKRVVRV 247


>gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 825

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 140/343 (40%), Gaps = 25/343 (7%)

Query: 35  SDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +DSR +      +F AI     DG  ++     +G    VV+    + +  A +  N+  
Sbjct: 29  TDSRSLCFAEETLFFAIKTMSNDGSKYLSDLYKRGVRNFVVNE---VPENYAVLYPNSNF 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V NT   L   A R   +    ++ +TG++GK+ V  ++ Q+   S +         T
Sbjct: 86  LKVSNTLDALQRLAERHRDEFAIPVIGITGSNGKTMVKEWIYQLLSPSLI--------VT 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            S  + +++   P  ++L   L+  +  GV    +      +D  R D I+   G  T +
Sbjct: 138 RSPRSYNSQTGVPLSVWL---LTNNTQLGVFEAGISEPGE-MDSLR-DIIQPTIGILTTI 192

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRV-LSV 270
           G  H +   + +   N K++LF      +S  +IY  D+   K  +++    G R  LS 
Sbjct: 193 GDAHQENFTSLEEKCNEKLKLF-----TDSKLLIYNEDNTLVKRCVEQFSFEGQRFSLSR 247

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   +++ KV   +    +  S +G +  +  P   E  + N++    + + +GID  
Sbjct: 248 QNEKSTLYVSKVLKNNADSVIYYSYKGVEGSYKIPFIDEASIENSIECLAIGLYLGIDKN 307

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            + E +  L  V  R E          I   Y    NSL++ L
Sbjct: 308 AIEERMASLEPVAMRLEVKEGRHDCTLINDSYNSDINSLDIAL 350


>gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
 gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
          Length = 417

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SDSR ++ G +FVAI G + DGH F+ +  AQGA A +V   + + D      +  P +V
Sbjct: 41  SDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVD--HEVAD------AGVPQIV 92

Query: 95  VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           VD+T + L   A       R  G  P  ++ +TG+ GK++    +  +    G +   +G
Sbjct: 93  VDDTVRALGELAKHNLERRRAIGS-PFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVG 151


>gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
 gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
          Length = 455

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 162/384 (42%), Gaps = 72/384 (18%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ + +D+R +  G +F+A+VG++ DGH F+ QA A GA A+VVS           + S 
Sbjct: 24  VSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQAEASGAAALVVSR---------PVDSA 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV-----ASFVQ---QICQRSG 141
            P ++V++T   L    + L  +     LA+TG+ GK+SV     A F Q    +  R  
Sbjct: 75  LPQILVEDTLLALGQMGAWLRRELAPRCLAITGSVGKTSVKEMTAAIFAQVGPTLATRGN 134

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYL----AKALSYLSSQGVTHVSVEASSHGLDQH 197
           L++  IG   T+     ++R      I L    A  + Y SS  + H +V  +  G    
Sbjct: 135 LNN-TIGVPMTLLELTPEHRFAV---IELGANHAGEIRYTSSLALPHAAVINNIRGAHLE 190

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
              GI+ +A                      AK  ++E  L +   AI+  DD ++  ++
Sbjct: 191 GFGGIEGVA---------------------RAKSEIYEH-LGEAGTAIVNLDDEWAPWLL 228

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPL 306
           +R          +G Q +F +  +  A      ++   +G  + FL            PL
Sbjct: 229 ER----------LGDQNRFTYSSRGPADLWASALSRDADGC-YHFLLHRGEAEVLVRLPL 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG  QV NAL AA L     +    +   L +   V GR +   T   G  + +D ++ +
Sbjct: 278 PGRHQVDNALAAAALASTAELSLEQIASGLAQAPTVAGRTQM--TALSGEVMLIDDSYNA 335

Query: 367 NSLE-MILKNIRTITSGRIIVVFG 389
           N+   M   ++     G  ++VFG
Sbjct: 336 NAASTMAAIDLMAERDGSSLLVFG 359


>gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 468

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G             +   + I   G   D      GE    NAL A    +A G+ 
Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            A +   LE    V GR +       S  G   +D  + +N  S+   +  +   ++ R+
Sbjct: 305 LAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGEMGEVGDEG 377


>gi|313813206|gb|EFS50920.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA1]
          Length = 471

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 22/237 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+  DH+D   T QAYF+  + +     P+    +  ADD  + E+  R  +    RV+
Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTDTVRVV 246

Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + G     + + + L       +   V    +G+       +PG + + NA  AA  C+ 
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301

Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI    +L  +        RF+ VG  +    ++ DYAH    L   L   R + + 
Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
            GR+I  F          R   G+   AL LAD  IV+D  P  EDP   +  E++H
Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415


>gi|227504694|ref|ZP_03934743.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
 gi|227198704|gb|EEI78752.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
          Length = 484

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 121/292 (41%), Gaps = 48/292 (16%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRL 162
           L A  + G H + +LA  GT GK+S  S      Q++GL  SF IG         Q NR 
Sbjct: 104 LLAELMEG-HQQILLA--GTHGKTSTTSMTVTAMQQAGLDPSFAIG--------GQLNRA 152

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T             ++   T  +  A +   D   L     +A   TN+  DH+D+   
Sbjct: 153 GT-------------NAHAGTGAAFVAEADESDASLLRYSPTVA-VITNVEPDHLDFFHN 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--------- 273
            +AY+      F + + +    ++  +D ++ +   RA   G +VL  G           
Sbjct: 199 AEAYYKV-FDDFADRIEESGYLVVCLEDDHAAQTGLRALERGIQVLGYGSAEAGEKYPSI 257

Query: 274 --GKFIHLKKVCAIHNKQQVTISVEG---KDFDFLFPLPGEFQVYN---ALVAAGLCIAI 325
                +  +KV  I  + +V +++ G   ++  +   +PG   V N   ALV+ GL    
Sbjct: 258 PLAAEVLEEKVSVIGMQVRVRVALPGAQSQELSYELQIPGHHMVLNSLAALVSGGLA--- 314

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           G + + + E L     V  RFEF GT S+  R++ DYAH    +  +L   R
Sbjct: 315 GGELSELAEGLTDFTGVRRRFEFRGTESQ-VRVFDDYAHHPTEVTAVLTAAR 365


>gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
 gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
          Length = 461

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S+DSR I    +F+A+ G + D H FI     +G+ A++V+           I  +
Sbjct: 30  IKSISTDSRKIDEDCLFIALAGERFDAHDFIADVKEKGSVAVLVNR---------EIDVD 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P L+V +T   +   A+ +       I+A+TG+SGK+SV      I +  G + +  G
Sbjct: 81  CPQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGSSGKTSVKEMTASILRHCGETLYTHG 139


>gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 454

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 150/373 (40%), Gaps = 59/373 (15%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  + ++  DSR I+ G +F+ + G + DGH FI +A   GA A           FS
Sbjct: 20  EFDDVPLKQIEFDSRKIEKGDLFLPLKGER-DGHDFIDKAFESGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
               S  P L+V +  K     A     K   +++AVTG++GK+S    ++ +       
Sbjct: 69  EKEISGHPYLLVKDCLKAFQKLAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKT 128

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   T+     D        I L     +L   G  H+  E +     Q
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPDDTE-----KIVLEMGQDHL---GDIHLLSEIA-----Q 175

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DA 251
             +  + LI       G  H+++  +++     KM++ + +    S  I+ A      D 
Sbjct: 176 PHIAVVTLI-------GEAHLEFFGSREKIAQGKMQITDGM---NSHGILIAPGDPIIDP 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           Y  E           V+  G + + I +K +    N    T +V  +      PL G++ 
Sbjct: 226 YLPE--------NQMVIRFG-ENQEIFVKSIEESKNSLSFTTNVLNQ--ALTLPLSGKYN 274

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
             NA++AA +   + +    ++E LE + +   R E+    S G  I  D Y     ++ 
Sbjct: 275 ATNAMLAAYVGKLLAVADEDIIEALEHVQLTRNRTEWKKA-SNGADILSDVYNANPTAMR 333

Query: 371 MILKNIRTITSGR 383
           +IL+    I   +
Sbjct: 334 LILETFTQIAPNQ 346


>gi|213691785|ref|YP_002322371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523246|gb|ACJ51993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457878|dbj|BAJ68499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 517

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 104/478 (21%), Positives = 190/478 (39%), Gaps = 84/478 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A V  + YS         +  P L+V++ RK +SL ++  YG +P+N L V G +G 
Sbjct: 75  GLAAYVAETEYSAA-------TAAPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126

Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175
                 + F Q +     +++   G  +  SS           ++ LTTP  +   + + 
Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
             +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K ++
Sbjct: 182 EAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQI 241

Query: 234 FEELLPKESPAIIYADDAYSKEVMKR----------------AHNAGCRVLSVGYQGKFI 277
                   + +++   D+   ++++                 A NAG     V +     
Sbjct: 242 I-----ANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTA 296

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEH 335
           H     A  ++   T+       D+   + G+F   NA  A  +  A G+  D A  L  
Sbjct: 297 HASFHIADGDQ---TLG------DYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHA 347

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGG 392
           +E + +  GR E            VDYAH   S+  +L  +       + RI +V G  G
Sbjct: 348 IESVRIA-GRMEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAG 406

Query: 393 DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------G 443
           ++   +R  + + A + +A+     +D     D E    +I   + G+I           
Sbjct: 407 NKAYDRRKEIVEAAENRIANFIFTAEDT----DTEPF-IDICMEMQGYITNKDVASTVIS 461

Query: 444 NRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495
           +R  AI  AI       ++ ++L++ GKG+E    + +  K +  D D  ++  + GL
Sbjct: 462 DRPTAITNAIYDARAHADRFNILLIIGKGNE--RWIKDHHKHVPFDGDDHVVERMFGL 517


>gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 483

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 129/341 (37%), Gaps = 41/341 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R  N VS DSR    G +FVAI G   DGH F+ +   QGA   +V              
Sbjct: 26  RSTNTVS-DSRQAGPGSVFVAIRGEHVDGHDFVAKTAGQGATVAIVDHEVESDGL----- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGL 142
              P +VV +T   L   A     +  E     +I+ +TG+ GK++    +  +      
Sbjct: 80  ---PQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA---- 132

Query: 143 SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +GPT + + SF  +  L   +         +++  G +H+   A        RL  
Sbjct: 133 ---TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RLTR 181

Query: 202 IKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           I     +    +G  H+    +++    AK  + + LLP  + A++ ADD +   V+  A
Sbjct: 182 IAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDEH---VVPMA 237

Query: 261 HNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNA 315
             A   VL  G    Q   +    V A  +       +  +G        +PG   V NA
Sbjct: 238 GLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMNA 297

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355
           L AA + +  G+    V   L   H + P R      N  G
Sbjct: 298 LAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 338


>gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 470

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           WR   ++ +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS          
Sbjct: 21  WR---VDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSR------RPE 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            +  + P+L+VD+ +  L         +    ++AVTG+ GK+S    + ++    G
Sbjct: 71  GVSEDAPLLLVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQG 127


>gi|297616982|ref|YP_003702141.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144819|gb|ADI01576.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 461

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 137/333 (41%), Gaps = 57/333 (17%)

Query: 69  EAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           E +VVSSA      +  A  R   P++      + L+L +++  G      +A+ G  GK
Sbjct: 67  ELVVVSSAIPPDNPEIQAAKRLGIPVI---KRGEMLALLSNKYRG------IAIAGAHGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP---SPIYLAKA----LSYLSS 179
           ++  S +  + + +GL      PT  I    Q + +        +++A+A     S+L  
Sbjct: 118 TTTTSMISLVLEDNGLD-----PTFIIGGQMQRSLVNAKLGRGELFVAEADESDASFLRL 172

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               HV+V                      TN+  DH+DY+Q+++   +A  +   ++LP
Sbjct: 173 H--PHVAV---------------------VTNVEDDHLDYYQSEENIRSAFQQFVNQVLP 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVE 296
            E  A++++ D +   + +++     R++  G+      F    + C I +  +      
Sbjct: 210 -EGFAVLFSGDRFLAGLKQKSR---ARLVYYGFDDNSDYFCREIRACGIGSAFKAY--CR 263

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   D    +PG   V NA+ A  +   +G++   +   L        RFE VG    G
Sbjct: 264 GQMLGDVYLKVPGIHNVLNAMAAIAVGCEVGVNFEGITRALGGFLGAKRRFEVVG-KLNG 322

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +  DYAH    ++  +   R     R+IV+F
Sbjct: 323 ITVIDDYAHHPTEIKATILAARQFHRSRLIVIF 355


>gi|148556847|ref|YP_001264429.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
 gi|166224734|sp|A5VDC5|MURC_SPHWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148502037|gb|ABQ70291.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
          Length = 473

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 110/283 (38%), Gaps = 34/283 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +A+ GT GK++  S V  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KSTVAIAGTHGKTTTTSMVAALLDAGGVDPTVIN-GGIINSYGSNARLGASDWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   +    TN+  +H+D++ +     +  +  F
Sbjct: 162 ------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHYGSFDKVKDCFVE-F 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
            E +P    A++  D    + ++ R  +   +V++ G+  +  +    V  I    +  +
Sbjct: 206 VENVPFYGAALLCIDHPEVQAIIPRVRDR--KVVTYGFSAQADVRGDNVTPIPGGNRFDV 263

Query: 294 SVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            V  +D D         P+PG   V NAL A G+ + + I  A++     K   V  RF 
Sbjct: 264 VVRNRDGDTRRIEGVTLPMPGRHNVQNALAAIGVALEMNISDAIIATGFAKFGGVKRRFT 323

Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
            VG    G  +     DY H    +  +L   R     ++I V
Sbjct: 324 KVGEVPVGDGVATVIDDYGHHPVEIRAVLAAAREGARAKVIAV 366


>gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri
           ATCC 33323]
 gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
 gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
          Length = 455

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 159/391 (40%), Gaps = 47/391 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ I  V  DSR      +F+ + G + DGH F+  A+A GAEA +    +  +     
Sbjct: 20  EDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAEATLWKKGHEGK----- 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             ++ P++ V++    L   A    GK    ++ +TG++GK++    V  +  +     F
Sbjct: 74  -PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLAK----RF 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +  T   ++F  +N +  P  I     L    S  +  + +     G   H  + ++  
Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +G  HI++  T+    +AKM + + L  KE    IY  D    E  +RA     
Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G++ +          +     T  +   +  F  P+ G+  V NAL A  +    
Sbjct: 236 DKSTFGFREEDTVFATTFRSY-MHHATFEINDSEQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITS-- 381
           G +   + + L        R ++     +G  G   +D  + SN        ++ +T+  
Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VKAVTTSF 345

Query: 382 GRIIVVFGCGGDRDQGKR-PIMGKIALDLAD 411
           G+++V       +D G+R  ++G + L+L D
Sbjct: 346 GQVMV-------QDGGRRIAVLGDM-LELGD 368


>gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 461

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 164/401 (40%), Gaps = 37/401 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINE----VSSDSRHIQAGWIFVAIVGNKEDG 56
           + +  L++      +N ++I  +  +  +IN     VS D+R ++ G +F AIVG + DG
Sbjct: 3   LSVSTLVFSTSQNTMNLITIASLLSQSCQINADITGVSIDTRTLKPGNLFFAIVGERFDG 62

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H FI +A A+GA A VV+ +            + P  VV +    L+  A+    +    
Sbjct: 63  HDFIKEAEAKGASAAVVNRSID--------GVHIPQFVVASPLMALAKIAAAHRQEMSCP 114

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALS 175
           I+A+TG++GK++V   +  I  +           S  +    +N +  P S + L K   
Sbjct: 115 IIALTGSNGKTTVKEMIATILPQP----------SHATKGNLNNHIGVPLSMLALNKQHR 164

Query: 176 YLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           Y   + G  H    A + G+ Q     + LI     N+   H++   +      +K  + 
Sbjct: 165 YAVFELGANHPGEIAHTVGIVQ---PDVSLI----NNIAPAHVEGFGSIDGVARSKGEIH 217

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L P    AI+  DDAY+        +      S  +             H +   T+ 
Sbjct: 218 QGLSPT-GVAIVNDDDAYAHFWDDLIADKKILRFSSLHPADIYAQDIRLDTHGRAHFTLV 276

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +     +    +PG   V NAL AA  C A+GI    +   L     V GR   +   ++
Sbjct: 277 LPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKGRMTMLSGQNQ 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGD 393
                +D  + +N L  +L  +  ++   GR I VFG  G+
Sbjct: 337 --STVIDDTYNAN-LRSVLTALEVLSGRPGRKIFVFGDMGE 374


>gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 438

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 14/146 (9%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSL 79
           FP  + ER I ++  DSR    G +FV I+G  +DGH FI  A+ +GA A++ S     L
Sbjct: 7   FP--FDERGIEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTEL 64

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV------ 133
           +     +R       V +TR  L         +    ++ VTG+SGK+++ S +      
Sbjct: 65  KKKYPEVR----FWQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSS 120

Query: 134 -QQICQRSGLSSFQIGPTSTISSFAQ 158
            +++ Q +G ++ Q+G   T+   A+
Sbjct: 121 ERRVFQTAGNANSQLGVPITLFQLAR 146


>gi|269127135|ref|YP_003300505.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
 gi|268312093|gb|ACY98467.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
          Length = 471

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 103/441 (23%), Positives = 167/441 (37%), Gaps = 77/441 (17%)

Query: 67  GAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPEN 116
           GAE  V  SA  L D      S  IR + P L     R    L      A+ + G+    
Sbjct: 61  GAEVFVGHSAEHLGDADTVVVSTAIRESNPELRAARERGLRVLHRSEALAALMAGR---R 117

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA-- 173
            +AV GT GK++  S +  + Q +GL  ++ IG     +    D+       +++A+A  
Sbjct: 118 AVAVAGTHGKTTTTSMLTVVLQHAGLDPAYCIGGQLVTTGLGADD---GTGDVFVAEADE 174

Query: 174 --LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              S+L      H++V                      TN+  DH+D +   +       
Sbjct: 175 SDGSFLRYS--PHIAV---------------------VTNVEADHLDNYGAFEKVKENFA 211

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R  E + P  +  +  ADD  + E+   A   G  V++ G +     L+           
Sbjct: 212 RFVERIEPGGA-LVASADDPVAGELAGAARERGLTVVTYG-ESAGADLRLTGFTPRGLGS 269

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             ++EG   +    +PG    +NA  A  +   +G D A + + L        R E  G 
Sbjct: 270 RFAIEGLG-ELTLEVPGRHYAHNATAALAVARLLGCDFATIRDGLASFTGSMRRLERKG- 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI--------TSGRIIVVFGCG-GDRDQGKRPIM 402
            + G +++  YAH    L   L+  R           +GRI+ VF      R +      
Sbjct: 328 EAGGVQVFDSYAHHPTELTADLQATREYLDQLAAEGRTGRIVAVFQPHLYSRTRFFATEF 387

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAI-------R 450
           G+ AL LAD+A+V D     EDPE        G+ G      + +G R+E +       +
Sbjct: 388 GR-ALGLADVAVVLDVYGAREDPEP-------GVSGRLIADAVPEGTRVEYVPVREQVPQ 439

Query: 451 TAIEMLNKQDVLVVAGKGHET 471
              E+    D+++  G G  T
Sbjct: 440 VVAELARPGDLVLTLGAGDVT 460


>gi|237743958|ref|ZP_04574439.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
 gi|229432989|gb|EEO43201.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
          Length = 611

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 156/369 (42%), Gaps = 51/369 (13%)

Query: 9   KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           KDF E++     N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 178 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 232

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +          I+    + V+D       L A++   K    ++ +TG+
Sbjct: 233 LDKGASLVIADNT--------NIKDKRVVKVIDTIATMQDL-ATKYRKKLDIQVIGITGS 283

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V        L S +     T  ++  +N +  P  +     L+    +   
Sbjct: 284 NGKTTTKDIVYS------LLSTKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 330

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  L E +  K +
Sbjct: 331 VLEMGMSSLG-EIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNT 389

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              +  DD Y              V  VG+     +  +     NK    + ++GK+++ 
Sbjct: 390 --FVCGDDEYL---------GKLDVNKVGFNENNDYKIESYEFSNKGSKFV-LDGKEYE- 436

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  + N  +A  L   IG+    + + L+++ +   RF+ +     G  IY++ 
Sbjct: 437 -MSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI---GEDIYIND 492

Query: 363 AHTSNSLEM 371
           A+ ++ + M
Sbjct: 493 AYNASPMSM 501


>gi|20094189|ref|NP_614036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
 gi|19887208|gb|AAM01966.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
          Length = 480

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 153/381 (40%), Gaps = 44/381 (11%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA-QGAE-------AIVVSSAYSLQDFSAT 85
           S D   + AGW   + +G  ++G + I   +  +GAE       A +V+     +     
Sbjct: 18  SGDPDSMIAGWF--STLGRAKEGDVVIRWWLDDKGAEIASERGVACLVTEHPRGKLIERC 75

Query: 86  IRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                P+++  VD   ++ +L  +R         + VTGT+GKS+    +  I   +G  
Sbjct: 76  DELGIPLILTEVDRANEY-ALRVAREKCAPDATAICVTGTNGKSTTNHLLHHILDTAGFD 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS-HGLDQHRL--- 199
           ++           ++ N L  P       A+     +   ++ VE S   GL   R+   
Sbjct: 135 AY-----CNTDFRSEKNTLIDP-----VVAMELREERPEDYLCVEVSEVQGLPTGRIMED 184

Query: 200 ------DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   +K      TN+G DH +   + +   +A   +    L K   A++  DD Y 
Sbjct: 185 HAYRMAKALKCELAVVTNVGVDHTNLVSSLEEMVDAVYGVVR-ALRKGGIAVLNRDDRY- 242

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              ++R    G   +  G+   + H+++      ++ + +  E       FPLP +  +Y
Sbjct: 243 ---VRRMTREGVETVWYGWDEGYSHIEER---DGEEWIVLDEEPLIPVREFPLPVDHFLY 296

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A     A+GID   + E L     +  RFE +  +     IY D+ H  + +   +
Sbjct: 297 NALAAVAAAGALGIDREDIAEGLRTYQPLKRRFERLCDDP---LIYDDFCHNPDGVLATV 353

Query: 374 KNIRTITSGRIIVVFGCGGDR 394
           + +R +   ++IVVF   G R
Sbjct: 354 RALRRLGRSKVIVVFAIRGSR 374


>gi|325280027|ref|YP_004252569.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311836|gb|ADY32389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 449

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 107/277 (38%), Gaps = 35/277 (12%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141
           S  I    P++V    R    +      G+H E  ++ +TG++GK++       I   +G
Sbjct: 68  SPGIPDTVPMVVALRERGIEVISEIEFAGRHTEAKMVCITGSNGKTTTTLLTCHILTTAG 127

Query: 142 LSSFQIGPT--STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           + +   G    S  +  A+D       P+Y+                VE SS  LD   +
Sbjct: 128 IDAGLAGNVGRSLAAQVAED-----AHPLYV----------------VELSSFQLDG--M 164

Query: 200 DGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +      TN+  DH+D Y    + Y ++K R+   + P++    IY  D+ +     
Sbjct: 165 FDFRADIAVLTNITPDHLDRYDHKFENYIDSKFRILNNMRPQD--LFIYGLDSEAVGHRL 222

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFL---FPLPGEFQV 312
           R      R+    Y  + I  K  C   A    ++V + +E + F        + G   V
Sbjct: 223 RQVRVVPRMAGFIYADRSIWEKNTCRSGAWMEGEEVVVQLENRQFRIAKQEISIQGRHNV 282

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           YNA+ A   C+ +G+    + E L     V  R E V
Sbjct: 283 YNAMAAILACMQVGVSDEKIAEGLRTFPQVEHRLETV 319


>gi|296454397|ref|YP_003661540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183828|gb|ADH00710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 517

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 104/478 (21%), Positives = 190/478 (39%), Gaps = 84/478 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A V  + YS         +  P L+V++ RK +SL ++  YG +P+N L V G +G 
Sbjct: 75  GLAAYVAETEYSAA-------TAAPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126

Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175
                 + F Q +     +++   G  +  SS           ++ LTTP  +   + + 
Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
             +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K ++
Sbjct: 182 EAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQI 241

Query: 234 FEELLPKESPAIIYADDAYSKEVMKR----------------AHNAGCRVLSVGYQGKFI 277
                   + +++   D+   ++++                 A NAG     V +     
Sbjct: 242 I-----ANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTA 296

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEH 335
           H     A  ++   T+       D+   + G+F   NA  A  +  A G+  D A  L  
Sbjct: 297 HASFHIADGDQ---TLG------DYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHA 347

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGG 392
           +E + +  GR E            VDYAH   S+  +L  +       + RI +V G  G
Sbjct: 348 IESVRIA-GRMEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAG 406

Query: 393 DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------G 443
           ++   +R  + + A + +A+     +D     D E    +I   + G+I           
Sbjct: 407 NKAYDRRKEIVEAAENRIANFIFTAEDT----DTEPF-IDICMEMQGYITNKDVASTVIS 461

Query: 444 NRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495
           +R  AI  AI       ++ ++L++ GKG+E    + +  K +  D D  ++  + GL
Sbjct: 462 DRPTAITNAIYDARAHADRFNILLIIGKGNE--RWIKDHHKHVPFDGDDHVVERMFGL 517


>gi|291301477|ref|YP_003512755.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM
           44728]
 gi|290570697|gb|ADD43662.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM
           44728]
          Length = 473

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGC 265
            TN+  DH++ + T +         F E L    P+   I+ ADD  +  V KR    G 
Sbjct: 187 LTNIDVDHLNTYGTIEELVEG----FAEFLRGTDPSGSIIVCADDERAAAVGKRLAAEGR 242

Query: 266 RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCI 323
            V+S G   +  + + ++    +  + T S  G+D   F   +PG     N+  A    +
Sbjct: 243 TVVSYGTDAEADLRIGEITIDASGARYTASYRGRDLGSFFVTVPGRHLALNSAAALLAGL 302

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-G 382
            + +D   +   L     V  RFE  GT + G R+Y +YA+   ++   L  ++TI   G
Sbjct: 303 LLDVDVEELRTGLAAFTGVRRRFELTGTVA-GVRVYDEYAYHPTAMNAALSTLKTIAEPG 361

Query: 383 RIIVVF 388
           R+IVVF
Sbjct: 362 RLIVVF 367


>gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 460

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 153/373 (41%), Gaps = 51/373 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DS+ I+ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 32  EIQGICIDSKKIKKGNLFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141
             PI+ VD+T   L   A     +   N++ +TG++GK++V   +  I        +  G
Sbjct: 85  GIPIIFVDDTLFALQQLAQFYRKELNVNVIGITGSNGKTTVKDIINTILSTTYRVHKTKG 144

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + QIG   TI    +D         +L   +       + ++S  A            
Sbjct: 145 NFNSQIGLPLTILEMKRDTE-------FLILEMGMSEKGQIRNLSKIAQPD--------- 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +G+ H++   +++    AK+ + + L  K+    +Y  D       K   
Sbjct: 189 ----VAIITMIGQSHLETLGSREEIAKAKLEIIDGL--KDEGLCLYNGDEPLLLKNKNLS 242

Query: 262 NAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +  C+     Y   F    + L +   IH K      +   +  +  PL G+  + NA+V
Sbjct: 243 SINCKAFGEKYTNDFFPTNVQLDEY-GIHFK------LNDSNIQYDVPLHGKHNILNAIV 295

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNI 376
              +     +    + + L ++++   RF+F+ T   G  I  D  + S +S++  ++  
Sbjct: 296 GIAIGQYYNVPVEKIQKALRQVNITHMRFQFL-TAKTGFTIINDAWNASPSSMKAAIETF 354

Query: 377 RTITS--GRIIVV 387
           +T+ +   +IIV+
Sbjct: 355 QTLNAYKKKIIVI 367


>gi|149926397|ref|ZP_01914658.1| cyanophycin synthetase [Limnobacter sp. MED105]
 gi|149824760|gb|EDM83974.1| cyanophycin synthetase [Limnobacter sp. MED105]
          Length = 870

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 155/390 (39%), Gaps = 40/390 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +F     G+ P  ++AVTGT+GK++    ++QI +   L   ++G T T       + + 
Sbjct: 467 MFKKDENGRIP--VVAVTGTNGKTTTVRLIEQILRYHNL---RVGFTGTEGVVVNGHLID 521

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DYH 220
           T        A   L         +E +  G+ +  L       G  TN+G  DH+  ++ 
Sbjct: 522 TGDCSGPKSAHKVLVHPEADAAVLECARGGMLREGLGFDMCDVGIVTNIGEGDHLGLNFI 581

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIH 278
            + +     K  L + + P    A++ ADD ++  + K       RVL  +       + 
Sbjct: 582 DSVEDLALLKSVLVQNVAPN-GLAVLNADDRHAANMAKLTPG---RVLFFTSNPDNPIVA 637

Query: 279 LKKV----CAIHNKQQVTISVEG--KDFDFL-FPLPGE----FQVYNALVAAGLCIAIGI 327
             K       IH+ + + IS +   K  D +  PL       FQV N + A    + + +
Sbjct: 638 AHKAKGRPVIIHDGRVINISYDDMEKTIDLMDVPLTNNGLFTFQVQNVMCAVAAALGLNV 697

Query: 328 DSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
               +   L         VPGRF F     +GG +  DY H  +++  ++  ++ I + R
Sbjct: 698 PFNTIRAALGSFQSTPDTVPGRFNFF--KHKGGSVIADYGHNPDAVSTLVNTLKNIPAVR 755

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KIRAEIIHGI------ 436
             VV    GDR        G++     D  I+ +D  +   P+ +  A +  GI      
Sbjct: 756 RTVVISAAGDRRDQDITEQGRLVGGFFDHIILYEDACQRGRPDGETLALLQQGIALASGD 815

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             P  +E     +AI+ A++      +++V
Sbjct: 816 KKPSVVEVRGEFKAIQMALDETGPDHLVLV 845


>gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 442

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 30/220 (13%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S D+R   AG ++ A+ G   DGH FI  A+ + A A+VV  AY +            ++
Sbjct: 27  SVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRASALVVERAYGVPG---------ELV 77

Query: 94  VVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           V D  R    L  +A R +G     ++ VTG++GK++    +  +      S   +G   
Sbjct: 78  VPDTLRALQNLGAWARRNWGG---TVIGVTGSAGKTTTKDAIAHLLA----SEMPVG--K 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFT 210
           T+ +F  +N +  P  +     L      GV  + +   +H  +   L  I +   G  T
Sbjct: 129 TVGNF--NNHVGVPLSLLR---LPDGCRAGVIEMGM---NHSGEIRELGAIARPEIGVVT 180

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           N+G  H+++  + +    AK  L E L P +  A++ ADD
Sbjct: 181 NVGYAHVEFFDSIEGIALAKRELIEGLTP-DGVAVLNADD 219


>gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 475

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++AG +F A+ G + DGH F+ QA+A GA   V++   + +         T ++ V
Sbjct: 31  DSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARGAVIARPLA-EVLPGGPPPGTAVVEV 89

Query: 96  DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
            +TR+ L+  A  +  + P   ++ +TG+ GK++       + ++
Sbjct: 90  ADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTKEMTAAVLEQ 134


>gi|168183628|ref|ZP_02618292.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|237797009|ref|YP_002864561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Ba4
           str. 657]
 gi|259509765|sp|C3KWA4|MURC_CLOB6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182673211|gb|EDT85172.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|229261312|gb|ACQ52345.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum Ba4
           str. 657]
          Length = 458

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 127/327 (38%), Gaps = 61/327 (18%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           ++A I S+ P  +++   K + L     F   L   +  NI A++GT GK++  S +  +
Sbjct: 75  YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNI-AISGTHGKTTTTSMLSHV 132

Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             ++      + PT  +         N     S  ++ +A  Y SS              
Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174

Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                   +K     G+  N+  DH+DY++      NA  + F +L+PK+   + Y +D 
Sbjct: 175 --------LKFFPYIGAILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCA----IHNKQQVTISVEGKDFD 301
             + ++K A    C V++ G     I        +K C     + N Q++        F 
Sbjct: 226 NIQSIIKEA---SCNVITYGINSGDIQAHNIEYDEKACGNFDVVKNNQKL--------FS 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG+  + N+L +  + +A  +    ++E +E       RFE  G  +    I  D
Sbjct: 275 VKLNVPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DD 333

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVF 388
           YAH    +   L   +     ++  VF
Sbjct: 334 YAHHPTEISATLDAAKKYPHNKLFCVF 360


>gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
          Length = 457

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 140/333 (42%), Gaps = 50/333 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR +    +F+AI G   DGH F+ + + +G +++V+            + SN P 
Sbjct: 31  ISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVLNKGVKSVVIKKG-----MQKLLPSNFPY 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145
            VV++T +     A     K    I+A+TG+ GK++    +  +  + G      ++F  
Sbjct: 86  WVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNN 145

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   TI +   ++++              +  +G+  +        L ++    I +I
Sbjct: 146 EIGVGLTILAADIEDKVLVLE----------MGMRGLGQI------ENLSKYSEPDIAVI 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHN 262
               TN+G  HI    +++   +AK  + + L P E   II A+D + ++ +K   +   
Sbjct: 190 ----TNIGTAHIGLLGSKENITHAKCEISKFLNP-EGVVIIPANDPFLEKTLKEFWKGRV 244

Query: 263 AGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              R+L++  Q + I     +   +N    TI +E   F+  F   G     N L A  +
Sbjct: 245 IKVRLLNIANQKESIKKDDNLRGFYNPSNKTILIEENTFEISF--EGFHNASNFLFAYAV 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +GID A              +F+FV  + R
Sbjct: 303 AKELGIDFA-----------SSNKFDFVSLDGR 324


>gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
 gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
          Length = 466

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 142/367 (38%), Gaps = 55/367 (14%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L+  D   +  Q  +     + R  + VS DSR ++ G +FV + G K+DGH +I  
Sbjct: 1   MKNLLSFDETSIAVQGMLLKNHTKARGFSSVSIDSRTVKDGSLFVPLRGEKQDGHRYIRS 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRS-------NTPILVVDNTRKFLSLFASRLYGKHPE 115
           A+ +GA        +   D S  I++       +   + V NT   L   A+R Y K   
Sbjct: 61  ALEKGAVLFFADEKFLSVD-SNKIKTEKLCDEFSASCIQVKNTLAALQA-AARFYLKKFP 118

Query: 116 NILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           N++ V  TG+SGK++       +             +   S       L + + +     
Sbjct: 119 NLIKVGITGSSGKTTTKEIAGAVL------------SQKFSVVMNKGNLNSETGL----P 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-------GSFTNLGRDHIDYHQTQQAY 226
           LS    +    V +      L  +R   +K I        G  TN+G  HI    +QQA 
Sbjct: 163 LSVFEVRDEHEVGI----FELGMNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAI 218

Query: 227 FNAKMRLFEELLPKES----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              K ++F     K+     P   + D   +  + K           V Y+     LK +
Sbjct: 219 AEEKKQIF-SFFDKDCMGFVPDCPFTDFLQAVPLGK----------VVCYEN--TTLKNI 265

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             I +K     ++  KD +  FPL G   + NA     L   +G+    +   LE +  +
Sbjct: 266 KKIESKGMYGSTIFYKDEEICFPLAGNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPI 325

Query: 343 PGRFEFV 349
            GR +F+
Sbjct: 326 FGRSQFM 332


>gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida F1]
 gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas putida F1]
          Length = 455

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR + AG +FVA+ G + DGH ++    A+GA A +V    +  D         P 
Sbjct: 28  VSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVAGVDL--------PQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           L+V   R  L    +       + ++A+TG+SGK++V   +  I +  GL
Sbjct: 80  LLVKGCRVALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGL 129


>gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
 gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
          Length = 455

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR + AG +FVA+ G + DGH ++    A+GA A +V    +  D         P 
Sbjct: 28  VSIDSRSVSAGQLFVALTGPRFDGHDYLADVKAKGAVAALVEREVADVDL--------PQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           L V + R  L    +     + + ++A+TG+SGK++V   +  I +  GL
Sbjct: 80  LRVADCRLALGQLGALNRAAYDKPVVAITGSSGKTTVKEMLASILRTRGL 129


>gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
 gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
          Length = 447

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 116/271 (42%), Gaps = 33/271 (12%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL    P+N +A+TGT+GK++  + ++ I + +G      G           N  T 
Sbjct: 100 LAYRL--SQPQNYIAITGTNGKTTTVTLIRDILKNAGRQVCLAG-----------NVGTP 146

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            S + L + L + S   V    +E S+  L    +D       +  NL  DH+DY  + +
Sbjct: 147 LSELVLNEDLLHKSDYDVV---LEMSNFQLLD--IDAFHPRVATIINLTPDHLDYMASLE 201

Query: 225 AYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
            Y+ +K R++      +    IY    DD   KE +++ +    +++S   + +   + K
Sbjct: 202 EYYTSKTRIY----MNQDHNDIYLQNKDDVVLKEYLQK-YPPQAKIVSFSLEQEADCMIK 256

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             AI+ + Q  I+++         + G   + N ++A   CI  GID   + + L     
Sbjct: 257 NDAIYYQGQHIINLDD------IKIVGRHNIQNMMIAICACIHSGIDVQSIHDTLAAFTG 310

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           V  R EFV    +G + Y D   T+    +I
Sbjct: 311 VEHRIEFV-REYQGVKYYNDSKATNTDAAII 340


>gi|316941823|gb|ADU75857.1| cyanophycin synthetase [Clostridium thermocellum DSM 1313]
          Length = 882

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 23/366 (6%)

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++G TST   F  D  +          A   LSS+ V    +E +  G+ +  L      
Sbjct: 508 KVGMTSTGGIFIGDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLAD 567

Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-- 261
            G  TN+  DH  ID   T +    AK  + E + P    +++ ADD + +  M+RA   
Sbjct: 568 VGVITNIAEDHLGIDGMNTLEDLAFAKSLVVEAVKPG-GYSVLNADDKFVRYFMERAKGE 626

Query: 262 ------NAGCRVLSVGYQ--GKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                 N    V+    Q  GK +++ K    I+N +   + +  K+    +    E  +
Sbjct: 627 IILFSKNNSNPVVKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNI 686

Query: 313 YNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            N+L AA     + +    + + L      +   PGRF  V       ++ +DY H    
Sbjct: 687 ENSLAAASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMGDF--KVMLDYGHNPAG 744

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427
              ++K +  I + R++ V G  GDRD       G+I     + I I  D + R  +P +
Sbjct: 745 YLEVMKFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGE 804

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +   +   +     K   +E I +    L K   L+ A  G   V    N E+   V   
Sbjct: 805 VAGILYDAVISSGTKKENVEIIYSEDRALEK--ALLDAQPGDFVVMFYENFERAAEVVER 862

Query: 488 IIREIL 493
           + RE+L
Sbjct: 863 VRRELL 868


>gi|85712535|ref|ZP_01043583.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
 gi|85693669|gb|EAQ31619.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
          Length = 455

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 138/332 (41%), Gaps = 54/332 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS     +D    +  +  + +V +   F  L       + P  ++AVTG++GKS
Sbjct: 79  ADLIVVSPGLDARDADIQMARDAGVPIVGDVEIFAQL------NQRP--VVAVTGSNGKS 130

Query: 128 SVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +V + V+Q+ Q  G      G      + +  QD             A +Y+        
Sbjct: 131 TVTTLVEQMGQYHGYRWVAAGNIGVPVLDALQQD-------------ADAYV-------- 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+  R   +KL A +  N+  DH+D + ++Q+YF AK+ +F          +
Sbjct: 170 -LELSSFQLETTR--SLKLNAAALLNVSADHLDRYDSEQSYFEAKLNIFNH---ASVSVL 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              D  +  +++  +      V++VG       +  +K    I   +  +I         
Sbjct: 224 NRQDQQHWPKIVPDS------VVTVGVDESVSDYGLVKDDAGIAMTRNGSILARAD---- 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            F L G   + N   A  L   +G+     +  +     +P R + V   ++G R +VD 
Sbjct: 274 RFALAGTHNLVNIQAALALAETLGLSPDKGIAAIADFTGLPHRCQVV-YEAQGVR-WVDD 331

Query: 363 AHTSN--SLEMILKNIRTITSGRIIVVFGCGG 392
           +  +N  + E  +  +R + +GR+I++ G  G
Sbjct: 332 SKATNIGATEAAINGLRPMINGRLILIAGGDG 363


>gi|296125459|ref|YP_003632711.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
 gi|296017275|gb|ADG70512.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
          Length = 462

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 168/426 (39%), Gaps = 73/426 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V SSA S  +          I V+        L   R YG      +A++G+ GK++ 
Sbjct: 69  AVVTSSAISPANEEIVAAKAKKITVISRGEMLAELMRLR-YG------IAISGSHGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            S + QI   +GL+   I  G    + S A  N L++                   ++  
Sbjct: 122 TSLISQIMMHAGLNPVCIIGGNHFNLKSNAVCNDLSSE------------------YMVC 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RL  +  +    TN+  DH+DY+   +A   A +    ++       + +
Sbjct: 164 EADESDGSFLRLSPVINVV---TNIDNDHLDYYGNVEALRVAFLEFINKVPFYGCSFLCF 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK-----------VCAIHNKQQVTISV 295
            +D     V   + +A  +  S G+   +  H+ K             A HNK+ +    
Sbjct: 221 ENDV----VRDLSKSANKKYYSYGFDKSYDFHVDKDSIRVEAPITYFIAYHNKECLG--- 273

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +F  PL GE  + N+L + G+   +GID   + E L+    V  R   +    + 
Sbjct: 274 -----EFSVPLIGEHNILNSLASIGVAYHLGIDVPNIKEGLKTFEGVGRRLNKL--YDKE 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG--KIALDLADI 412
             ++ DYAH    ++  L ++R    S RII VF     R      ++   + A + AD 
Sbjct: 327 ITLFDDYAHHPTEIKATLSSVRNAYKSRRIIAVF--QPHRYSRTELLLNDFEYAFNDADE 384

Query: 413 AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQ-DVLV 463
            I+TD     E P   +  EII  I   ++K N+       I+ +   +E + K  D+++
Sbjct: 385 VIITDIYAAGEAPIAGVNGEIICDI---VKKQNKNVRYIKNIDEVLPVLESIKKDGDIII 441

Query: 464 VAGKGH 469
             G G+
Sbjct: 442 TLGAGN 447


>gi|114773356|ref|ZP_01450560.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
 gi|114546290|gb|EAU49201.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
          Length = 470

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 26/191 (13%)

Query: 210 TNLGRDHIDYHQT----QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           TN+  +H++++ +    + A++N     F   +P    AI   D    + ++ R  +   
Sbjct: 189 TNIDPEHMEHYGSFDNLKDAFYN-----FVSNIPFYGLAICNTDHPEVQSLVGRVDDR-- 241

Query: 266 RVLSVGY------QGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNAL 316
           R+++ G+      + + +  KK CA  +     I+++ ++    D + P+PG++ V NAL
Sbjct: 242 RIVTYGFNKQADVRAENLKFKKGCAYFD-----IALQSENAFIKDVMLPMPGDYNVSNAL 296

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+D+  +   L +   V  RF  VG    G  I  DYAH    +  +L   
Sbjct: 297 AAVAVSRHLGMDAKQIRNALLEFKGVKRRFTHVG-EINGVTIIDDYAHHPVEISAVLSAA 355

Query: 377 RTITSGRIIVV 387
           +  TSG++I V
Sbjct: 356 KQATSGKVIAV 366


>gi|19704793|ref|NP_604355.1| histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19715132|gb|AAL95654.1| Histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 613

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 160/369 (43%), Gaps = 51/369 (13%)

Query: 9   KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           KDF E++     N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 178 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 232

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA ++V++    ++D          I+ V +T   +   A +   K    ++ +TG+
Sbjct: 233 LDKGA-SLVIADNTDVKD--------ERIIKVSDTIATMQDLAIKYRKKLDIQVVGITGS 283

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V        L S +     T  ++  +N +  P  +     L+    +   
Sbjct: 284 NGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 330

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  L  E + KE+
Sbjct: 331 VLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELL-EFVNKEN 388

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              +  DD Y          A   V  +G+     +  +     +K    + ++GK+++ 
Sbjct: 389 -TFVCGDDKYL---------AKLDVNKIGFNNSNTYKIESYKFSDKGSKFV-LDGKEYE- 436

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  + N  +A  L   IG+    +   L+++ +   RF+ +     G  IY++ 
Sbjct: 437 -MSLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISNMRFQEIKI---GEDIYIND 492

Query: 363 AHTSNSLEM 371
           A+ ++ + M
Sbjct: 493 AYNASPMSM 501


>gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
 gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
          Length = 425

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 148/364 (40%), Gaps = 42/364 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +VS+DSR I    IF A+ G   +G+ F  +A+++GA   VV       DF    R    
Sbjct: 15  KVSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVDEG----DFPDEPRC--- 67

Query: 92  ILVVDNTRKFLSL-FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           I V D       L    RL  K    I+ +TG++GK++    +  +  +           
Sbjct: 68  IRVPDALAALQQLAMHHRLQCK--ARIIGLTGSNGKTTTKELIAAVLSKK---------Y 116

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRL--DGIKLIAG 207
            T+++    N        ++   L+ L     T ++ VE  ++   + RL  +  +   G
Sbjct: 117 RTLATRGNLNN-------HIGVPLTLLRIAPETELAIVEMGANHQGEIRLLSEMAQPDFG 169

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN G+ H++     +     K  L+E L+ + +   + ADD    E  K A  A C  
Sbjct: 170 YITNFGKAHLEGFGGVEGVIRGKSELYENLMERGATIFMNADDPVQFE--KLAGYANC-- 225

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             VG+  +     ++  + +   V + V+  D      L G +   N  V+A +    G+
Sbjct: 226 --VGFSTRNPAYMQIKNLTDGPAVRLQVD--DVVVQTQLTGRYNFSNCAVSACIGKHFGV 281

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVD-YAHTSNSLEMILKNIRTITSGRII 385
            +  + E LE       R + +    RG  RI +D Y     S+   L+N+  + S R I
Sbjct: 282 PAEAIAEALESYIPANNRSQLI---ERGNLRILLDAYNANPTSMAAALENLAEMDSPRKI 338

Query: 386 VVFG 389
            + G
Sbjct: 339 AILG 342


>gi|167946373|ref|ZP_02533447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 145

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDF 82
           +ER I+ ++ DSR++  G +F+A  G    G  F  QA+AQGA AI         + Q  
Sbjct: 27  QERPISCLAIDSRNLCPGGLFLACQGGDRHGLDFTEQALAQGAVAIAWEPNGPEVNRQAE 86

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQ 135
               +   P++ V+   +  SL A+R   Y      ++ VTGT+GK+SV+  + Q
Sbjct: 87  RLATQLPIPLIRVEGLTRLASLIAARFFAYPSRSMTVIGVTGTNGKTSVSHLLAQ 141


>gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
 gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
          Length = 857

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 154/365 (42%), Gaps = 34/365 (9%)

Query: 29  KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           KI  V +DSR +      +F A+   + DGH +IP+   +G    VV+   +  D+ AT 
Sbjct: 55  KIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGVRNFVVTEVPA--DY-ATE 111

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-ICQRSGLSSF 145
            +    L V N+ + L   A R   +    I+ +TG++GK+ V  ++ Q +C    +   
Sbjct: 112 YAEANFLKVVNSLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLCDDMFI--- 168

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                 T S  + ++++  P  ++L   L+  +  G+    +      L     D I+  
Sbjct: 169 ------TRSPRSYNSQVGVPLSVWL---LNEHTQVGIFEAGISQPGEMLALR--DIIQPT 217

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRAHN- 262
               TNLG  H      Q+ + + +M+  E+L L  ++  ++Y  DD      +    + 
Sbjct: 218 IAVLTNLGDAH------QENFISKEMKCKEKLILFHDAKTVVYNGDDPIVNGCVNELEDF 271

Query: 263 AGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            G R+  S+  +     +K V        VT   +G +  +  P   +  V N+   A +
Sbjct: 272 KGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSFACAAV 331

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIRT 378
            + +G+   ++ E +++L  +  R E V     G  +  D Y    NSL++ L   N R 
Sbjct: 332 ALTLGVGVDVLDERMQQLEPIAMRLE-VKQGQHGCTLINDSYNSDINSLDIALDFMNRRP 390

Query: 379 ITSGR 383
              GR
Sbjct: 391 DHQGR 395


>gi|319777842|ref|YP_004134272.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171561|gb|ADV15098.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 907

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 151/401 (37%), Gaps = 53/401 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF     G+ P  I A+TGT+GKS+ A  +  I Q +G +   +G TST   +    R+ 
Sbjct: 484 LFRGGKDGRIP--IFAITGTNGKSTTARMLSHILQANGAT---VGLTSTTGVYLNGERIM 538

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T        A   L   GV    +E +  G+ +  L       G+  N+  DH+      
Sbjct: 539 TGDCSGPQSARIVLREPGVDVAVLECARGGILREGLAFDACDIGAVLNVHGDHLGLRGID 598

Query: 224 QAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCR-------------VLS 269
                A+++       +    +I+ ADD ++  + + A    C                 
Sbjct: 599 TIDDLAEVKSVVVESVRRGGWSILNADDIHTSAMSREAGGRICYFSLLNRSDWPDFLCSH 658

Query: 270 VGYQGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           V   G+ +  ++        IH   +    ++  +    F    EF V N+L A  +   
Sbjct: 659 VAEGGRAVTRERSRDGWDIVIHEDGESMFLMDVDEIPATFEGAAEFNVANSLAAVAMAHC 718

Query: 325 IGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             I +A +   L +        PGR      +  G R  VDYAH    L+ + K +  + 
Sbjct: 719 HDIPAATIRAALAEFTTSFEHSPGRLNVF--DGHGFRTIVDYAHNPEGLKALGKLVSHMK 776

Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            G  R I +    GDR       MG +A  + D+ +        ED  ++R      I G
Sbjct: 777 RGYQRTIGLVAIPGDRRDCDIREMGAVASRIFDVIVF------KEDEHELRGRAPGTIAG 830

Query: 439 FIEKG--------NRI-------EAIRTAIEMLNKQDVLVV 464
            + +G         RI       EA+   +++  ++D++V+
Sbjct: 831 LLREGALNAGCAPGRIQAVCPEKEAVDVCLQLAREKDLVVL 871


>gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. m3-13]
          Length = 453

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 149/345 (43%), Gaps = 40/345 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R   +G +++ I+G   +GH F+  AI +      V+S +  Q       ++  +
Sbjct: 30  VSKDTREDMSGKLYIPIIGENFNGHAFVRDAIEKKG---AVASFW--QKDQPEPPTDLNL 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+T + L   AS    +    ++ +TG++GK++    V  + +    ++F++  T+ 
Sbjct: 85  IVVDDTIEALQHLASSYRNQIGMKVVGITGSNGKTTTKDMVTSVLE----TTFRVHKTAG 140

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG--IKLIAGSF 209
                 +N +  P        L+ LS +  T V+V E    G  +  L     K  A   
Sbjct: 141 ----NYNNHIGLP--------LTILSMKEDTEVAVLEMGMSGRGEIELLSSIAKPDAAVI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GCR 266
           TN+G  H+    +++    AK+ +    L ++   II  D+    + +    N    G +
Sbjct: 189 TNIGESHMQDLGSREGIAEAKLEIAAG-LKQDGKLIINGDEPLLTDRVGGKTNVIPFGLK 247

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             +  YQ K I LK +          I    ++ ++  P+ G   V NAL A  +    G
Sbjct: 248 A-NNDYQAKDIMLKGIGT-----HFII----EETEYFIPVLGAHNVTNALAAIIVGELFG 297

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +      + LE+L +   R E V T+  GG   ++ A+ ++   M
Sbjct: 298 VSEENRKKGLEQLVITGMRNEVVETS--GGWTVINDAYNASPTSM 340


>gi|260767161|ref|ZP_05876104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
 gi|260617835|gb|EEX43011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
          Length = 453

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 17/142 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  VS+D+R I    +FVA+VG + D H F  QA+A GA+A++V  A  +       
Sbjct: 21  DTDIAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERALDV------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N P LVV NT+  L    S ++ +     +A+TG+ GK++V   V  I    G   F 
Sbjct: 74  --NVPQLVVSNTKTALGQLGSWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVLFT 131

Query: 147 IG--------PTSTISSFAQDN 160
            G        P + + S  QD+
Sbjct: 132 AGNFNNDIGVPLTLLRSTPQDD 153


>gi|255038732|ref|YP_003089353.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Dyadobacter fermentans DSM
           18053]
 gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053]
          Length = 824

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 142/335 (42%), Gaps = 51/335 (15%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY---SLQDFSATIRSN 89
           +DSR +      IF AI G + DGH F+P+  A G    VV  A    +L++ +AT    
Sbjct: 20  TDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVVEEAAFTGALRETAATWDDA 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--RSGLSS--- 144
              +V  + R    L AS+   +    ++ + G++GK+ V  ++ Q+    RS ++S   
Sbjct: 80  QIWVVSSSIRALQQLVASK-RKQFDIPVVGIAGSNGKTIVKEWLVQLLSPGRSIVASPKS 138

Query: 145 --FQIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
              QIG   ++ + ++++ L    + I  A  + YL  Q V   ++              
Sbjct: 139 YNSQIGVPLSVWNLSKEHSLAIFEAGISKAHEMEYL--QPVMQPTI-------------- 182

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE----VM 257
                G FTN+G  H D  ++++     K+RLF ++       +IY  D +  +    ++
Sbjct: 183 -----GIFTNIGPAHDDGFRSRKQKITEKLRLFTKV-----KKLIYRKDYHEIDEEISLI 232

Query: 258 KRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313
            +  NA    LS G  Y G  +   +V     K +  IS+ GK  +  F      +  + 
Sbjct: 233 LKPVNAFLETLSWGSNYSGSHV---QVTFNPQKDKTVISLTGKLGNHTFETGFRDDASLE 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           N        +  G++ A++ E +  L  V  R E 
Sbjct: 290 NLTHCIVFLLDFGLEPAVIQERVLLLKPVSMRLEL 324


>gi|289522908|ref|ZP_06439762.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503932|gb|EFD25096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 133/345 (38%), Gaps = 66/345 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            + +V+SS  S Q     +  N  +L+    +  L      L GK    I+ VTGT+GKS
Sbjct: 61  CDLVVLSSGISPQSLPVEMAKNAGVLI----QGELDFVFPFLTGK----IIGVTGTNGKS 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + ++ +  +  + G  +   G                         L+  + Q +  ++ 
Sbjct: 113 TTSALIAHLLSKLGYKTALAGN--------------------FGFPLADFAKQDLDFIAA 152

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L  H  +         TN+  DH+D+H + +AY  +K R+  +LL  +   +  
Sbjct: 153 EISSFQL--HWANRFSCHIAVVTNICPDHLDWHGSFKAYVESKKRII-DLLSSDGYCVYQ 209

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----------IHNKQQVTISVEG 297
             D   +E+++     GCR       G  +     C+          I +  +  +  E 
Sbjct: 210 NKD---RELLR---TNGCR-------GAVLRWASDCSTGKCEEQDEIILHDSEAYLRTES 256

Query: 298 KDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +D       + PL G   V N  +A      +G D+      L     +P R E VG   
Sbjct: 257 RDIKLFSYSILPLYGRHNVENTAMAMTAVYYLGCDAERTSHLLSDFKNLPHRCEKVG--E 314

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQ 396
           + G  ++D +  +N    +  +I  ITS  G  +++ G  G  +Q
Sbjct: 315 KKGITFIDDSKGTN----VASSITAITSIPGTKVIILGGKGKGEQ 355


>gi|126726619|ref|ZP_01742459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
 gi|126703948|gb|EBA03041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
          Length = 465

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 146/382 (38%), Gaps = 64/382 (16%)

Query: 101 FLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           F   FA++ +    +   ++A+TG++GKS+ ++ +  I  R G  S   G    I     
Sbjct: 104 FFQSFATQSWDNFDQIPKVIAITGSNGKSTTSALMHHILTRVGRPSQLAG---NIGRGVL 160

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D        +                V +E SS+  D  R   +      FTNL  DH+D
Sbjct: 161 DIDPAIDGEV----------------VVLELSSYQTDLAR--SLTPDVAVFTNLSPDHLD 202

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKF 276
            H     YF AK RLF E  P    A+I  D+A  + +  +        RV+ V   GK 
Sbjct: 203 RHGGMGGYFAAKRRLFAEGGPDR--AVIGVDEAEGRMLANQLAEGPVDDRVIRVSVAGKL 260

Query: 277 IHL-------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +       K   A   K +   S+   D   +  LPG     NA +       +G+  
Sbjct: 261 TGMGWNIFVKKGFLAETRKGKQVASI---DLRSVAALPGVHNHQNAAMVYAALRTLGLAP 317

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVV 387
            ++         +P R + VG     G  Y++ +  +N  S  M LK  + I   R IV 
Sbjct: 318 KVIEAGFHDFAGLPHRSQPVGEID--GVKYINDSKATNVDSAAMALKAFKNI---RWIV- 371

Query: 388 FGCGGDRDQGK----RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
              GG   +G      P+MG +        I TD  P   D      EI H I   ++  
Sbjct: 372 ---GGQAKEGGISSLVPLMGDVTRAY---VIGTDPKPFLAD----LTEIDHVICNTMD-- 419

Query: 444 NRIEAIRTAIEMLNKQDVLVVA 465
              EA++ A    N  DV+++A
Sbjct: 420 ---EAVKQAASDANAGDVVLLA 438


>gi|256005655|ref|ZP_05430613.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
 gi|255990413|gb|EEU00537.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
          Length = 824

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 23/366 (6%)

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++G TST   F  D  +          A   LSS+ V    +E +  G+ +  L      
Sbjct: 450 KVGMTSTGGIFIGDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLAD 509

Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-- 261
            G  TN+  DH  ID   T +    AK  + E + P    +++ ADD + +  M+RA   
Sbjct: 510 VGVITNIAEDHLGIDGMNTLEDLAFAKSLVVEAVKPG-GYSVLNADDKFVRYFMERAKGE 568

Query: 262 ------NAGCRVLSVGYQ--GKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                 N    V+    Q  GK +++ K    I+N +   + +  K+    +    E  +
Sbjct: 569 IILFSKNNSNPVVKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNI 628

Query: 313 YNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            N+L AA     + +    + + L      +   PGRF  V       ++ +DY H    
Sbjct: 629 ENSLAAASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMGDF--KVMLDYGHNPAG 686

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427
              ++K +  I + R++ V G  GDRD       G+I     + I I  D + R  +P +
Sbjct: 687 YLEVMKFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGE 746

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +   +   +     K   +E I +    L K   L+ A  G   V    N E+   V   
Sbjct: 747 VAGILYDAVISSGTKKENVEIIYSEDRALEK--ALLDAQPGDFVVMFYENFERAAEVVER 804

Query: 488 IIREIL 493
           + RE+L
Sbjct: 805 VRRELL 810


>gi|281418842|ref|ZP_06249861.1| cyanophycin synthetase [Clostridium thermocellum JW20]
 gi|281407926|gb|EFB38185.1| cyanophycin synthetase [Clostridium thermocellum JW20]
          Length = 882

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 23/366 (6%)

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++G TST   F  D  +          A   LSS+ V    +E +  G+ +  L      
Sbjct: 508 KVGMTSTGGIFIGDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLAD 567

Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-- 261
            G  TN+  DH  ID   T +    AK  + E + P    +++ ADD + +  M+RA   
Sbjct: 568 VGVITNIAEDHLGIDGMNTLEDLAFAKSLVVEAVKPG-GYSVLNADDKFVRYFMERAKGE 626

Query: 262 ------NAGCRVLSVGYQ--GKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                 N    V+    Q  GK +++ K    I+N +   + +  K+    +    E  +
Sbjct: 627 IILFSKNNSNPVVKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNI 686

Query: 313 YNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            N+L AA     + +    + + L      +   PGRF  V       ++ +DY H    
Sbjct: 687 ENSLAAASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMGDF--KVMLDYGHNPAG 744

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427
              ++K +  I + R++ V G  GDRD       G+I     + I I  D + R  +P +
Sbjct: 745 YLEVMKFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGE 804

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +   +   +     K   +E I +    L K   L+ A  G   V    N E+   V   
Sbjct: 805 VAGILYDAVISSGTKKENVEIIYSEDRALEK--ALLDAQPGDFVVMFYENFERAAEVVER 862

Query: 488 IIREIL 493
           + RE+L
Sbjct: 863 VRRELL 868


>gi|325962947|ref|YP_004240853.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469034|gb|ADX72719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 473

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 108/270 (40%), Gaps = 44/270 (16%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+   + LA+TGT+GK++     + + + +GL +  +G             + TP    +
Sbjct: 83  GRKTADWLAITGTNGKTTTVGLTESMLRAAGLKAIAVG------------NVGTPILDAI 130

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              + Y         +VE SS  L  H  + +  +A    N+  DH+D+H +  +Y   K
Sbjct: 131 RDPVEY------DVFAVELSSFQL--HWSESLSPVASVCLNIAEDHVDWHGSYDSYVADK 182

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCA-- 284
            +++E    +   A +Y  +A   E  +   NA    GCR +        I +  V    
Sbjct: 183 AKVYE----RTQKACLY--NAEQIETERMVENADVVEGCRAIGFTTLTPAISMLGVVEGL 236

Query: 285 ------IHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 I  ++     +   +D   L P      V NAL AAGL  A G++   V + ++
Sbjct: 237 LVDRAFIEERKDSAAELASMRDLGALAP---RHMVANALAAAGLVRAYGVEPKAVRQGIQ 293

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               +PG           G ++V+ +  +N
Sbjct: 294 DY--IPGDHRIQPVARHNGVLWVNDSKATN 321


>gi|307265454|ref|ZP_07547010.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919568|gb|EFN49786.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 819

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 30/298 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK++V      I +  G   + +G T T   +  D  +          A + 
Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID  +T +  A+  A   
Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288
           L  E + ++  +++ ADD  +  + +RA   G  +    Y        H++K   A++ K
Sbjct: 594 LVVEAVKEDGYSVLNADDPMTTYLAQRAK--GKIIYFSRYDNNLTVKKHIEKGGIAVYVK 651

Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             V +   G      K  +    L G+  + V NAL A      + +   ++ + ++  +
Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFY 711

Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
                 PGRF     N    R+ VDY H    ++ +++  + + + R+I V G  GDR
Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDR 767


>gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
 gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
          Length = 472

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 151/370 (40%), Gaps = 32/370 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + V+ DSR +  G +F+A+ G   DGH F+ +A A GA   +VS A            
Sbjct: 24  RTDGVTFDSREVGPGDLFIALKGETTDGHRFLDKAFAAGAAGAIVSDA-----------C 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P + V +T   L    +    +    ++ VTG+ GK+     +     R+        
Sbjct: 73  DGPHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGKTGTKEALYACLDRALPGRVH-- 130

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              ++ S+       T  P+ LA+ +   +  GV  + +  S       RL  ++     
Sbjct: 131 --RSVKSYNNH----TGVPLSLAR-MPADTRIGVFEMGMNHSGELAALTRL--VRPHVAI 181

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +   H  +  ++    +AK  +F+ L P    AII  D  +   ++  A     R+L
Sbjct: 182 VTAIAPAHSAFFASEADIADAKGEIFQGLQPG-GVAIIPYDSPHRDRLIAAAKPHAARIL 240

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G  +   +H + V  +     +++ +   +  F    PGE  V NA+       A+G 
Sbjct: 241 TFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAMAVIAAVWAVGG 300

Query: 328 DSALVLEHLEKLHVVPGRFE----FVGTNS--RGGRIYVDYAHTSN--SLEMILKNIRTI 379
           D A       ++  +PGR +     VG+ +   G  + +D ++ +N  S+   +K +   
Sbjct: 301 DLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPASMAATIKMLGRE 360

Query: 380 TSGRIIVVFG 389
            + R + V G
Sbjct: 361 RADRRLAVLG 370


>gi|256027429|ref|ZP_05441263.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289765392|ref|ZP_06524770.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289716947|gb|EFD80959.1| histidinol-phosphatase [Fusobacterium sp. D11]
          Length = 607

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 161/369 (43%), Gaps = 51/369 (13%)

Query: 9   KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           KDF E++     N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 174 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA ++V++   +++D          ++ V +T   +   A++   K    ++ +TG+
Sbjct: 229 LDKGA-SLVIADNTNIKD--------KRVVKVTDTIATMQNLATKYRKKLDIQVIGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V        L S +     T  ++  +N +  P  +     L+    +   
Sbjct: 280 NGKTTTKDIVYS------LLSTKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  L E +  K +
Sbjct: 327 VLEMGMSSLG-EIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNT 385

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              +  DD Y              V  VG+     +  +     NK    + ++GK+++ 
Sbjct: 386 --FVCGDDEYL---------GKLDVNKVGFNENNDYKIENYEFSNKGSKFV-LDGKEYE- 432

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  + N  +A  L   IG+    + + L+++ +   RF+ +     G  IY++ 
Sbjct: 433 -MSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI---GEDIYIND 488

Query: 363 AHTSNSLEM 371
           A+ ++ + M
Sbjct: 489 AYNASPMSM 497


>gi|295702921|ref|YP_003595996.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
 gi|294800580|gb|ADF37646.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
          Length = 469

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 1/138 (0%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H+   +T + Y  AK  + E L P     I+ ADD   K V+  +H      +  
Sbjct: 187 NIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADDENIKRVLDVSHLQNVVYIGK 246

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +F   K +   +     T+  +  ++D   P  GE  VYNAL A      +GID +
Sbjct: 247 NDSSQF-QAKDIKYANKGMAFTLKYQNTEYDAFIPGYGEHNVYNALAAIAAVFYVGIDIS 305

Query: 331 LVLEHLEKLHVVPGRFEF 348
           + ++ L     V    EF
Sbjct: 306 VAIQRLSLFEQVEEHLEF 323


>gi|110639121|ref|YP_679330.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
 gi|122966617|sp|Q11RH6|MURC_CYTH3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110281802|gb|ABG59988.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 466

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 155/373 (41%), Gaps = 65/373 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL--SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + + GT GK++ +S    I   SG+  S+F  G T                  Y    L 
Sbjct: 115 IGIAGTHGKTTTSSMAAHIMHESGMPCSAFLGGITQN----------------YNTNILI 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G   V  EA  +  D+  L     IA    N+  DH+D +   Q+++++    F 
Sbjct: 159 GNHGDGAGWVVAEADEY--DRSFLQLSPDIA-VINNMDPDHLDIYSDVQSFYDS----FN 211

Query: 236 ELLPKESPA--IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           E L K  P   +I   D    +V   +H +    LSV +       + V A +  Q V +
Sbjct: 212 EYLKKLKPGGIVIRRVDV---DVQIPSHAS----LSVTFG------ESVEADYRIQNVVV 258

Query: 294 SVEGKDF----DFL------FPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHV 341
              G  F    DF         +PG   V NA  A  A     + IDS  +   L     
Sbjct: 259 EDGGVTFSIDHDFTRWNNIRIEMPGMHNVMNATAAFLAAHFAGVSIDS--IKASLRSFGG 316

Query: 342 VPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKR 399
           V  RFE++  N++   +YVD YAH    LE +LK +R +  G +++ VF          R
Sbjct: 317 VKRRFEYIYKNTK--LVYVDDYAHHPTELEALLKAVRMVFPGKKVVTVFQP--HLFSRTR 372

Query: 400 PIMGKIA--LDLADIAIVTDDNPRSEDP-EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEM 455
             M + A  L L D  ++ +  P  E P E I +++ ++ IP   +K    E++ T +E 
Sbjct: 373 DFMQEFAQSLALTDELLLMEIYPARELPIEGITSDVLLNLIPSTNKKVVSKESLLTELEK 432

Query: 456 LNKQDVLVVAGKG 468
           LN  DV++ AG G
Sbjct: 433 LNF-DVVITAGAG 444


>gi|319760287|ref|YP_004124225.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039001|gb|ADV33551.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 482

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 134/341 (39%), Gaps = 54/341 (15%)

Query: 65  AQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              A+ +V+SSA +L +  F A  R   PI+     R+   LF    Y       +A+ G
Sbjct: 76  VNNADLVVISSAINLNNIEFQAAKRLKIPIM-----RRAEVLFELMRYKYG----IAIAG 126

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  + +  I   +GL    I   + I S    +R    S  ++ +A     S   
Sbjct: 127 THGKTTTTAMLANIYVEAGLDPTFIN-GAIIRSEGVQSRFGC-SCYFIIEADESDKSFLW 184

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +VE                     TN+  DH+  +Q    +       F   LP   
Sbjct: 185 LYPTVEI-------------------ITNIDFDHMSAYQNNYEFLKKAFVEFLNHLPVYG 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQVTISVEG 297
            A+I  DD   + V+    N   ++++ G+         +C ++      K + T+ ++ 
Sbjct: 226 YAVICIDDPAIRSVLS---NVNRKIITYGFSKD----ADLCILNYHQYREKSKFTVLIKN 278

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------ 350
           K   + +  +PG   V NA  + G+ I  GI   ++L  +        RFE +G      
Sbjct: 279 KKKLEIILNIPGYHNVLNATASIGVSIEEGIPDLVILRAMLNFQGTNRRFENLGFYSLKQ 338

Query: 351 TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            N R G++ +  DY H    L   +  +R+     R+I+VF
Sbjct: 339 INGRVGKVMIVDDYGHHPTELHATIATVRSGWPDKRLIMVF 379


>gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
 gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
          Length = 453

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 142/348 (40%), Gaps = 42/348 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +INEV++D+R I  G +FVA+ G + D H F   A+A GA A++VS    L         
Sbjct: 23  QINEVTTDTRQITPGCLFVALKGERFDAHDFAADALAAGAGALLVSKRLPL--------- 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV      I ++ G   +  G
Sbjct: 74  GAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGEVLYTAG 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--------GVTHVSVEASSHGLDQHRLD 200
                 +F  D        I +   L  L  Q        G  H+   A +  L + +  
Sbjct: 134 ------NFNND--------IGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQ-- 177

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKR 259
                     NL   H++   +      AK  +F   LP +  AII AD+  +     + 
Sbjct: 178 -----TALVNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPADGVAIINADNNDWPHWQTQL 231

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 R       G      ++       Q T+           PLPG   V NAL AA
Sbjct: 232 VGKTVWRFSPQATDGVDFFASEISVNGKGTQFTLHSPFGAVAIELPLPGRHNVANALAAA 291

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            L  ++G     V   L +L  VPGR   +    + G++ +D ++ +N
Sbjct: 292 ALATSVGASLEAVRVGLGQLQAVPGRLFPI--QLKPGQLLLDDSYNAN 337


>gi|294670616|ref|ZP_06735494.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307655|gb|EFE48898.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 469

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 145/383 (37%), Gaps = 66/383 (17%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGA+ +V S+A      + +A +    P++     R  +     R      ++ +A+ GT
Sbjct: 63  QGADVVVTSTAVKKDNPEVTAAVAQQIPVI----PRALMLAEMMRF-----KDGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S    I   +GL  +F IG    +++   + RL   S                
Sbjct: 114 HGKTTTTSLTASILAAAGLDPTFVIG--GKLTAAGTNARLGKGS---------------- 155

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++  EA     D   L    L+A   TN+  DH+D +       +     F   +P   
Sbjct: 156 -YIVAEADES--DASFLYLTPLMA-VVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYG 211

Query: 243 PAIIYADDAYSKEVMKR-------------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            A +  D  + + ++ R             A      V S+G Q KF        +H + 
Sbjct: 212 KAFLCIDSEHVRAILPRISKPHATYGLDDSADIYATDVESIGAQMKF-------TVHARL 264

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +     E + FD +  LPG   V NAL A G+ +  G+D   V   LE    V  RF+  
Sbjct: 265 K---GHEPRTFDVVLNLPGRHNVLNALAAIGVALECGVDEEAVRRGLEGFAGVGRRFQSY 321

Query: 350 GTNS--RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
           G     +GG+  V  DY H    +   L   R      R+++ F     R    R +   
Sbjct: 322 GEIELPQGGKALVVDDYGHHPVEMAATLSAARGAYPDKRLVLAFQP--HRYTRTRDLFDD 379

Query: 405 IA--LDLADIAIVTDDNPRSEDP 425
            +  L+  D+ ++TD     EDP
Sbjct: 380 FSKVLNTVDVLVLTDVYAAGEDP 402


>gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Pseudomonas entomophila L48]
 gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Pseudomonas
           entomophila L48]
          Length = 455

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR + AG +FVA+ G + DGH ++    A+GA A +V    +  D         P 
Sbjct: 28  VSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREIADVDL--------PQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV ++R  L    +       + ++A+TG+SGK++V   +  I +  G
Sbjct: 80  LVVADSRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLAAILRTRG 128


>gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 456

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 148/324 (45%), Gaps = 36/324 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNT 90
           VS+DSR I AG +FVA+ G   DGH ++  A A+GA A +V++     LQ  S       
Sbjct: 24  VSTDSRSIAAGELFVALRGENFDGHDYVAAAKARGAAAAIVATDAAEGLQALS------L 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P++ V  TR  L   A+   G+    +LAVTG++GK++    +  I +    +++     
Sbjct: 78  PLVQVAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKEMIASILK----AAYGEAVL 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
           +T  +F  D  L    P+ L + L+      +  + +   +H  +   L GI +      
Sbjct: 134 ATQGNFNNDIGL----PLTLLR-LNATHRAAIIELGM---NHPGEIAYLAGIARPTVALV 185

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN  R H+    + +A    K  ++   L +   A+  ADD ++K  + R+   G R+++
Sbjct: 186 TNAQRAHLAGMGSLEAIAAEKGSIYTG-LDETGVAVFNADDPWAK--LWRSQCRGLRMMT 242

Query: 270 VGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            G++      GKF HL  +     + ++++       D +  LPG+    NAL AA   +
Sbjct: 243 FGFEQAADVTGKF-HLHGL-----ESRLSLFAPDGQADVVLALPGQHNARNALAAATAAL 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFE 347
           A GI    V   L     + GR +
Sbjct: 297 AAGISLTAVQAGLSAFRGLKGRLQ 320


>gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
 gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
          Length = 446

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 111/242 (45%), Gaps = 31/242 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R IQ G +F+A+ G   D + FI +A  QGA   VV+           +++  P+
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A     + P   + VTG+ GK++  + +  + ++ G         ++
Sbjct: 76  ICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209
             SF  +N +  P        L+ L  +   H ++    ++H  +   L G+ K      
Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAII 179

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G  H++   + +    AK  +FE  L  +  A+I  DD +++   + AH+   R++S
Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236

Query: 270 VG 271
            G
Sbjct: 237 FG 238


>gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 463

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 159/390 (40%), Gaps = 22/390 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++NE+S+D+R ++   +FV ++G   DGH FI QA+ +GA   +V      Q+F     +
Sbjct: 25  QVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQAMERGAIGALVQKG---QEFPLGKLN 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V++T + L               + VTG++GK++    +  I +    ++F + 
Sbjct: 82  DFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGKTTTKDMIAGILE----TNFNVL 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N++  P  ++    L      GV  + + +    L   +   ++     
Sbjct: 138 KNEG----NLNNQIGLPLTLF---NLEPCHEIGVLEMGMNSLGEILSLAKT--VQPHIAV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI++  +Q+    AKM +   L  K+   +I  DD + K V + +        
Sbjct: 189 ITNVGFSHIEHLGSQENILTAKMEITTRLREKDY-LLINGDDPFLKTVKEESKTYRIITF 247

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +           VC      +  + ++ K   F    PG   VYN LVA  + +   + 
Sbjct: 248 GIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLVALWVGLHYQMT 307

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              + +  ++L +   R E V T      I   Y  + +S++  +  +   T  R I + 
Sbjct: 308 PLAIQKGFDRLELSKMRLEIV-TYGDVKVINDAYNASPDSMKAAITVLNQSTGIRKIAIL 366

Query: 389 G----CGGDRDQGKRPIMGKIALDLADIAI 414
           G     G   ++G R I   IA    D  I
Sbjct: 367 GDILEMGSFAEEGHRRIGSFIATSPVDYLI 396


>gi|239994437|ref|ZP_04714961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii ATCC 27126]
          Length = 510

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 141/363 (38%), Gaps = 66/363 (18%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G + +V+S   +L      +     + V+ +   F  L AS       + ++ +TG++G
Sbjct: 75  DGVDTLVLSPGLALDIEQVALAQKCGVEVIGDVELFARLNASTSDATPAKRVVGITGSNG 134

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  + +  G+ S + G                  P+     L  L S     V
Sbjct: 135 KTTVTLLVNHLLKNCGVKSIEAG--------------NVGRPV-----LEALQSDADV-V 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      + L A +  N+  DH+D H T +AY +AK R+F+        A+
Sbjct: 175 VMELSSFQLETTS--SLVLEAATVLNISDDHLDRHGTLEAYIDAKHRIFD----NAKSAV 228

Query: 246 IYADDA----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC------------------ 283
           ++ D      Y + +      A    +S G      + + +                   
Sbjct: 229 VWRDGEFVAPYEQLITDAKGIAASNAVSDGESNAASNEESLASKNIVEYGLGESTTGFAI 288

Query: 284 --------AIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                   A  ++Q + I+ + +    L    L G   V N + A G+C+ +G+  AL +
Sbjct: 289 ASFDGDDSARDDEQSLYITFKDEKLIALSDIHLAGMHNVLNIMAALGICLQLGVSPALAV 348

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRTITSGRIIVVFGC 390
           +HL      P R   +   +R   I Y+D +  +N  +    L+ +     G++I++   
Sbjct: 349 KHLRSFKAAPHRCVEI---ARVNDIRYIDDSKATNIGATVAALEGLAPTIQGKLILI--A 403

Query: 391 GGD 393
           GGD
Sbjct: 404 GGD 406


>gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 457

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 39/307 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR I    +F+AI G   DGH F+ + + +G +++V+           ++  + P 
Sbjct: 31  ISIDSRTILKDDLFIAIKGKDFDGHSFLSEVLKKGVKSVVIKKG-----MQKSLPIDFPC 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-----LSSF-- 145
            VV++T +     A     K    I+A+TG+ GK++    + ++ ++ G      S+F  
Sbjct: 86  WVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMMGEVLKKLGRIKLSYSNFNN 145

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   TI     ++++              +  +G+  +        L ++    I +I
Sbjct: 146 EIGVGLTILDTDVEDKVLVLE----------MGMRGLGQI------ENLSKYSEPDIAVI 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHN 262
               TN+G  HI    +++    AK  + + L PK    II A+D+  +E +K   +   
Sbjct: 190 ----TNIGTAHIGLLGSKKNITYAKCEISKFLNPK-GVVIIPANDSLLEETLKEFWKGRV 244

Query: 263 AGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               +L++  Q  +F     +   +N    TIS++   F+  F   G     N L A G+
Sbjct: 245 IKVELLNIENQNERFKKDDNLRGFYNPSNKTISIQENTFEISF--GGFHNASNFLFAYGV 302

Query: 322 CIAIGID 328
              +GID
Sbjct: 303 AKELGID 309


>gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
 gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
          Length = 467

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 119/295 (40%), Gaps = 50/295 (16%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKS 127
           +AIV+S    L         +TP +     R+   +    L  +H +  I+A TGT+GK+
Sbjct: 81  DAIVLSPGVPL---------DTPFMKAALKRQIPIIGEMELAARHVDVPIIAATGTNGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V SF+ ++ +  GL+ F  G             + TP   YL      +      ++ V
Sbjct: 132 TVTSFLGRMLEDQGLAVFVGG------------NIGTPLTAYL------MGEMKADYLVV 173

Query: 188 EASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           E SS  LD  +     I +I     N+  DH+D +    AY ++K+R+FE     ++  I
Sbjct: 174 EISSFQLDTIERFTPEISII----LNISPDHLDRYADYSAYIHSKLRIFENQGAGQT-VI 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----IHNKQQVTISVEGKDFD 301
           +  DD   K   K     G  VL  G       LKK       I N+  ++   E   F+
Sbjct: 229 LNDDDIVLK---KTTPPEGTSVLRYG-------LKKGAGIDAFIENEGILSAVTEKGRFN 278

Query: 302 F-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              F LPG   + N L       A+G+    + + +     +  R E V  N  G
Sbjct: 279 LSAFSLPGAHNLENLLAVVLAGQALGLAPEPIQKTINAFKGLSNRLERVCANGHG 333


>gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 91]
          Length = 289

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           L V +TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124


>gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella kingae ATCC 23330]
          Length = 454

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P     + IN + +DSR  Q+G +FVA++G   D H F+   +A+GA A+V     S  
Sbjct: 15  LPQPENNQPINRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALV-----SRD 69

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           DF       +  L VD+T   L   A          +  +TG+SGK++V   +  + + 
Sbjct: 70  DFVGV----SGCLKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLTTVLRE 124


>gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
 gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
          Length = 450

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 17/131 (12%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            + +L   P    +  IN++++DSR  Q G +F A+VG   D H F+P  +A+GA A+V 
Sbjct: 8   FVRRLFRLPEIATDSPINQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVV- 66

Query: 74  SSAYSLQDFSATIRSNTPILVVDNT----RKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            S      FS  ++ +  +  +       RK L+ F   +YG        +TG+SGK++V
Sbjct: 67  -SRGDCASFSGCLKVDDTLAALQTLAAAWRKQLNPF---VYG--------ITGSSGKTTV 114

Query: 130 ASFVQQICQRS 140
              +  I + +
Sbjct: 115 KEMLASILRTA 125


>gi|222149138|ref|YP_002550095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           vitis S4]
 gi|221736123|gb|ACM37086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Agrobacterium
           vitis S4]
          Length = 471

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 26/170 (15%)

Query: 102 LSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           + LF      K P+   +A+TGT+GKS+  + +  I + +G    QIG     +      
Sbjct: 100 IELFVRERQAKAPDCPFIAITGTNGKSTTTALIGHILRHNGYD-VQIGGNIGTAVLT--- 155

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            L  P+P                +  VE SS+ +D     GI   AG   NL  DH+D H
Sbjct: 156 -LEPPAPD--------------RYYVVECSSYQIDL--APGIDPTAGILLNLTPDHLDRH 198

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            + + Y   K    E L+     AII  DD Y  E+ KR   AG  V+ +
Sbjct: 199 GSMENYAAVK----ERLVSGSDVAIIGVDDDYCLEIAKRLEEAGKEVVRI 244


>gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 446

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 41/289 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R IQ G +F+A+ G   D + FI +A  QGA   VV+           +++  P+
Sbjct: 25  VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A     + P   + VTG+ GK++  + +  + ++ G         ++
Sbjct: 76  ICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209
             SF  +N +  P        L+ L  +   H ++    ++H  +   L G+ K      
Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAII 179

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G  H++   + +    AK  +FE  L  +  A+I  DD +++   + AH+   R++S
Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALV 317
            G       + K         +T++ EG+  F  + P  G+ ++   L+
Sbjct: 237 FGINQPADVMAK--------NITLNSEGRPAFQLVLP-TGQLEIQLPLI 276


>gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
 gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
          Length = 474

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 61/348 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +++D+R++    +FVA+ G   D HLF+  AI+ GA+A++V  A            +
Sbjct: 27  IDAIATDTRNLAEQALFVALKGENFDAHLFLDNAISTGAKALLVEQASD---------HD 77

Query: 90  TPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSS----VASFVQQICQ------ 138
             ++VV +TR  L   ++ +  K    N +A+TG++GK++    +++ +++ CQ      
Sbjct: 78  IAMIVVTDTRLALGALSAYVRDKIKGLNCIAITGSNGKTTCKELLSAVLREHCQDDSALL 137

Query: 139 -RSGLSSFQIGPTSTISSFAQDNRLTT-------PSPI-YLAK----ALSYLSSQGVTHV 185
             +G  + +IG   T+    Q+ R          P  I Y A+     ++ +++    H+
Sbjct: 138 ATAGNFNNEIGVPLTLLRLTQNTRFAVLELGANHPGEINYTAQLVQPKVALINNIMAAHL 197

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G+   + +  + +    T +     D+ QT  +   A+ +         + A 
Sbjct: 198 EGFGSLAGVASSKGEIWRHLQADGTAVVNLDADFSQTYLSQLQAQGQCIFTFSQTLAQAN 257

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLF 304
            +AD      +   AH         G     +H+K  +C     Q +++ +         
Sbjct: 258 FFAD-----AIEFDAH---------GNANFILHVKTPICT--GTQSISLKI--------- 292

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             PG+  V NAL  A + +A+G     V + L +L  V GR   +  N
Sbjct: 293 --PGQHNVSNALAVASMAVALGCSLENVAKGLAQLPGVSGRVARIEVN 338


>gi|332978084|gb|EGK14822.1| tetrahydrofolate synthase [Desmospora sp. 8437]
          Length = 440

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 154/413 (37%), Gaps = 87/413 (21%)

Query: 113 HPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT------ 163
           HPE  L    + GT+GK S A+ V  + Q +G   + +G  S+        R+T      
Sbjct: 41  HPERRLKFIHIAGTNGKGSTAAMVASVLQEAG---YPVGMFSSPYLHHWGERITLDGEPI 97

Query: 164 ---------------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                                      TP   +   A+ Y + + V    V  +  G   
Sbjct: 98  PEKSFVHWAGQVAQLVEEMDREGVGRVTPFEFWTLVAILYFAKEAVPWFVVWETGLG--- 154

Query: 197 HRLDGIKLI---AGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            RLD   ++       TN+G DH     +T       K  + +       P +       
Sbjct: 155 GRLDSTNVVYPLVSVITNVGHDHTHILGETVTQIAGEKAGIIK-------PGVPVVTACE 207

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------- 302
            +E +         VLS   + K   L ++    +    +   EG+ F F          
Sbjct: 208 EEEALS--------VLSTVAEEKQCRLYRLHREFDVVPRSGGEEGESFSFHNPFRPLERV 259

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-----PGRFEFVGTNSRGGR 357
             PL GE QV N  VA      +    A VLE  + L  +     PGR E V   S+  R
Sbjct: 260 RIPLRGEHQVKNGAVALMTLEILRKYYATVLEETDVLAGMENVRWPGRLEQV---SQHPR 316

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +D AH     E + + +R ++  R++++     D+D      + K  L L D  +VT 
Sbjct: 317 VLLDGAHNPEGAEALARALRDLSCDRLLLLTAVLEDKDATG---ILKPLLPLVDRVMVTG 373

Query: 418 -DNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVVAG 466
            D PR  +P ++R E+   +   +E G      E +R  +E   ++D +VVAG
Sbjct: 374 VDQPRGLEPARLR-EVAARLRPDLEIGQATGADEGLRRLLEEAGERDCIVVAG 425


>gi|313619820|gb|EFR91411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL S4-378]
          Length = 394

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 126/300 (42%), Gaps = 44/300 (14%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------- 140
           ++ P+++V+NT   L   A++   +    ++A+TG++GK++    +  I + +       
Sbjct: 15  TDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTG 74

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  +  IG   TI +  +D  +              +   G+ H           +H ++
Sbjct: 75  GNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RHEIE 110

Query: 201 GIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            +  IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + + +
Sbjct: 111 VLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIYP---HEENL 165

Query: 257 MKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +    +   R L+ G      I+  ++ A         + E  D +   P+ GE  V+N 
Sbjct: 166 LLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNT 224

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           + A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK
Sbjct: 225 MAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLK 283


>gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
 gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
          Length = 449

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 55/374 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR +    +FV + G + DGH F  QA  +GA A   S          TI+  
Sbjct: 22  ISSIEFDSRLVTTDSLFVPLAGTR-DGHEFAQQAQEKGAIAAFWSHP--------TIQPP 72

Query: 90  TPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             +++++  +T       A     K    ++A+TG++GK++    V  +  +     F+ 
Sbjct: 73  EGLMIIEVSDTLAAFQKLAKFYKEKLAPKVIAITGSNGKTTTKDMVDAVVAQQ----FKT 128

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHV-SVEASSHGLDQHRLDGIKL 204
             T        +N +  P  I  A A +   +   G+ H   +E  SH L Q  +  I L
Sbjct: 129 YKTQG----NHNNEIGLPLTILHAPADTEVLVLEMGMDHAGEIEVLSH-LAQPDVAAITL 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVM 257
           I       G  HI+   +++    AKM +   L       +P + P +      Y  E+ 
Sbjct: 184 I-------GEAHIENLGSREGIAKAKMEITAGLDPAGFFMIPADEPLLT----PYLAELT 232

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           ++    G   L  G      +LK       ++Q   +V   D  +  P+ G + V NAL+
Sbjct: 233 QQVETFG---LGEG------NLKGTIQEETQEQTAFTV--ADQVYTIPVIGGYNVKNALI 281

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A G+   +GI+   +   L    +   R +++   + G  I  D Y     ++ ++L + 
Sbjct: 282 AIGIGRYLGIEEEKIKAGLADFQLTKNRTQWLKA-ANGAAILSDVYNANPTAMGLVLDSF 340

Query: 377 RTIT-SGRIIVVFG 389
           R +  +GR I V  
Sbjct: 341 RKLPLTGRRIAVLA 354


>gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 7894]
 gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 112]
          Length = 289

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           L V +TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124


>gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis G/11222]
 gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-EC]
 gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-LC]
          Length = 450

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80

Query: 88  SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
               +L V + R+ L   A R      YG+    ++ +TG+ GK++  +F  Q+   S +
Sbjct: 81  ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNFANQLL--SSV 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               + P S       +++LT P  + +A
Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152


>gi|271964376|ref|YP_003338572.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
 gi|270507551|gb|ACZ85829.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
          Length = 468

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 31/232 (13%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D +   +A +++  R  E +       +I ADD  S  ++  A   G +V++
Sbjct: 189 TNVEPDHLDNYGDPRAVYDSFARFVERV---GKSMVICADDPGSAALVPIARARGLKVVT 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G + +    +    + +   ++ +VEG+  +    +PG     NA     + + +G+  
Sbjct: 246 YG-EAEGADFRVSGILPDGLGISFAVEGRG-EVRLAVPGRHNALNATAVIAVAMELGVSF 303

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRI 384
             + + L        RFE  G  + G  ++  YAH    L   L+  R +      SGR+
Sbjct: 304 DEIRDGLAAFTGAKRRFEAKG-EAGGVAVFDSYAHHPTELAADLRAARDVVASFSGSGRV 362

Query: 385 IVVFGCGGDRDQGKRPIMGK----------IALDLADIAIVTDDNPRSEDPE 426
           I VF          +P +            +AL LAD AIV D     EDPE
Sbjct: 363 IAVF----------QPHLYSRTRFFADEFGVALGLADEAIVLDVYGAREDPE 404


>gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           sulfurreducens KN400]
          Length = 470

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 111/258 (43%), Gaps = 20/258 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR ++ G +F+ + G + DGH ++  A A+G    +V   +        + ++   
Sbjct: 28  VSTDSRTVEPGELFIPLRGERFDGHDYLDAARARGVRLTLVERQWLA---GRQLPADVTC 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+T + L   A+    +    ++AVTG++GK++    +  I  R+G           
Sbjct: 85  IVVDDTLRALGDLAACHRRRFDIPVVAVTGSNGKTTTKEMLAAILARTG--------EGL 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +    +N +  P  ++    LS +    V  + +  S  G      + ++   G  TN 
Sbjct: 137 KTEGNLNNLIGVPRMLF---RLSGVHRWAVLEIGM--SEFGEIDRLAEIVRPDVGIITNA 191

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++   + +    AK  LF  L P  S A+  ADD     + +     G + +S G 
Sbjct: 192 YPAHLETLGSVEGVARAKGELFLRLEPGSS-AVYNADDPL---IARCPSPEGVKRVSFGL 247

Query: 273 QGKFIHLKKVCAIHNKQQ 290
           +G  +  + V  +  K Q
Sbjct: 248 RGGDVTAEDVENLGKKGQ 265


>gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 492

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 136/360 (37%), Gaps = 63/360 (17%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+++ V+ DSR     ++FV I G + DGH FIPQ + QG  A+   S + L D      
Sbjct: 26  REVSGVTIDSRKAGKDFLFVPIKGARVDGHSFIPQVMEQG--ALCTLSEHPLSD------ 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRS 140
            + P ++V +  + L   A          ++ ++G+ GK+S    +AS ++Q   + + +
Sbjct: 78  -SFPYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTSTKEMIASILEQKYSVLKTA 136

Query: 141 G---------LSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           G         L+ FQI            IS F + NRL   +       +  L++ G  H
Sbjct: 137 GNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKVA----QPDICVLTNIGQCH 192

Query: 185 VSVEASSHGLDQ-------HRLDGIKLIAG----SFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +       G+ +       HR  G  +I        + +   H      Q          
Sbjct: 193 LENLGDRDGVRKAKTEMFAHRRPGASIILNGDDDKLSEIATVHAASFSKQDGTTVVPYSD 252

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                   + A+  + D       K  HNA     + S+G +G        C IH     
Sbjct: 253 STHDETSAASAVGKSGDTTPIFFGKDPHNAFYADEIQSLGLKG------TSCKIH----- 301

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  DF  +  +PG   VYNAL    + I +G+    +   +E L  V GR   + T
Sbjct: 302 ---APAGDFTVIISIPGAHMVYNALAGTAVGIELGLTLDEIKTGIEALQPVAGRNHMIET 358


>gi|323356555|ref|YP_004222951.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323272926|dbj|BAJ73071.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 470

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 149/369 (40%), Gaps = 38/369 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I+ G IFVA  G   DGHLF+  A+ +GA   +V     L D  + I      
Sbjct: 33  VDTDSRLIEPGDIFVAKPGETTDGHLFVGTAVERGAALAIVE--RELDDPVSQI------ 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            VV +    LS  A  +  +  E+    I+ +TG++GK++  + + +I    G       
Sbjct: 85  -VVPDAVTALSDLARDVVARVREHGRLRIVGITGSNGKTTTKNLLARILSDEG------- 136

Query: 149 PTSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T+S  A  +N +  P + + + +   +L S+        AS+ G   H    +    
Sbjct: 137 --ETVSPRASFNNEVGAPLTMLRVTEDTRFLVSE------FGASAPGAIAHLAGLVTPDV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNAG 264
           G    +G  H       ++ F AK  L      +   A++  DD    + E   R     
Sbjct: 189 GVVLMVGMAHAGGFGGIESTFRAKSELVHATR-EGGLAVLNVDDPRVAAMEPFARERGQD 247

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R    G +   +    V    +  +  + V+G+ F     + GE  V NAL A     A
Sbjct: 248 VRWFGRGERAA-VRAVDVEVSASGTRADLLVDGEPFTLTLRVLGEHHVMNALAALATATA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG- 382
           +G+ +A  +  LE + +   R+      S   RI  D Y  + +S+   L+ +  IT   
Sbjct: 307 LGVPAAEAIARLETVEIAE-RWRMQPLGSDRVRIINDAYNASPDSMAAALRTLAQITGPG 365

Query: 383 -RIIVVFGC 390
            R + V G 
Sbjct: 366 ERTVAVLGA 374


>gi|255525853|ref|ZP_05392782.1| cyanophycin synthetase [Clostridium carboxidivorans P7]
 gi|255510496|gb|EET86807.1| cyanophycin synthetase [Clostridium carboxidivorans P7]
          Length = 871

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 145/353 (41%), Gaps = 38/353 (10%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+ + +G T+T   +  +  +          A   L ++ +    +E +  G+ +  L  
Sbjct: 500 LAGYNVGMTTTGGIYVDNKCIEKGDTTGYNSARVILGNKEIDAAVLETARGGIIRKGLAY 559

Query: 202 IKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH  ID  +T +  AY  +   L  E +  +   +I AD+  S +++
Sbjct: 560 DLADVGVITNITEDHLGIDGIETIEDLAYVKS---LVAEAVKDDGYVVINADNPVSLKIL 616

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEGKDF--------DFLFPLP 307
            R  +         Y    +   K   C I+  +  TI VE ++         D +  L 
Sbjct: 617 DRTKSNIIMFSKNKYNPALVKNIKQGGCGIYTNEG-TIYVEKQEKVVPMVKIQDVMITLN 675

Query: 308 GE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVD 361
           G+  + + NA+ A    I + I  +++ + L   +      PGRF     N  G ++ +D
Sbjct: 676 GKLTYNIENAMAACAALIGLNIKYSVIRKGLTSFYGDENYNPGRFNMYEIN--GVKVVLD 733

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H     + ++   + I   R+I V G  GDR       +G+I+    D   + +D  R
Sbjct: 734 YGHNIEGYKAVINGAKEIKHKRLIGVIGVPGDRTNSSTEYIGEISGKSFDYIYIKEDKDR 793

Query: 422 -----SEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVV 464
                 E  + I+  +++   GF E+   +     EA++ AIE   + D++++
Sbjct: 794 RGRKVGEIADIIKKGVVN--SGFNERKINVILDEKEALKKAIEDSVEGDLIII 844


>gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 463

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 41/244 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S+D+R ++    F+A+ G + DGH FI  A+ +GA  +VV+S          +R+ 
Sbjct: 25  VDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKGAAVVVVASGRG----EGAVRAG 80

Query: 90  TPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--------RS 140
           +  +V VD+T   L   A     ++   +  +TG++GK+S    +  I +        R 
Sbjct: 81  SVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTKELLAAILEHRHGILKNRG 140

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRL 199
            L++ QIG   T         L T  P + A  +   ++  G     VE +   L     
Sbjct: 141 NLNN-QIGVPLT---------LLTMDPTHEAAVIEMGINVPGEMARLVEIAGPTL----- 185

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKE 255
                  G  TN+   H++   +       K RL++  L  E  A++  DD    AYSK 
Sbjct: 186 -------GLITNIQPAHLEGLGSLDGILKEKGRLWDA-LDAEGIAVVNLDDQRLRAYSKR 237

Query: 256 VMKR 259
           +  R
Sbjct: 238 LAAR 241


>gi|294666416|ref|ZP_06731660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292603785|gb|EFF47192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 463

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 111/271 (40%), Gaps = 47/271 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-----SP---- 167
           +LA+TG++GK+SV + +  I Q +G      G T   +   ++N +  P     +P    
Sbjct: 63  VLALTGSNGKTSVKALLLSILQEAGRVD---GTTVYATPGNRNNEIGLPLAVLAAPDDAD 119

Query: 168 --IYLAKA-----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             IY   A     ++YL+     HV++  +       RL  +  +A              
Sbjct: 120 VAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVA-------------- 165

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---KEVMKRAHNAGCRVLSVGYQGKFI 277
           QT+ A + A        LP +  A+I ADDA+    ++ ++     G RVL  G Q    
Sbjct: 166 QTKGAIYAA--------LPADGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGVQASAE 217

Query: 278 HLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
              +   +H    Q T+     +     PLPG   V NAL A GL +  GI   ++   L
Sbjct: 218 ITARQLRLHPGGAQFTLVTPQGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGL 277

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +   V GR   +      G + +D ++ +N
Sbjct: 278 AQARPVAGR--QIAQTLPNGAVLIDDSYNAN 306


>gi|302344213|ref|YP_003808742.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
 gi|301640826|gb|ADK86148.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
          Length = 458

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 7/182 (3%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+ R+H+D++ + QA   A +  F   +P    AII  DD     ++ R      RV++
Sbjct: 179 TNIDREHMDHYGSDQALDEAFVE-FMNKVPFYGAAIICLDDPRVAALIPRVRK---RVIT 234

Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGI 327
            G  G+     ++V     +   ++  +G++   +  PLPG   V N L A  +   +G+
Sbjct: 235 YGQSGQADFEAREVSHQGMRTSFSLFAQGQNLGRVQVPLPGRHNVLNTLAALAVAKELGV 294

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIV 386
              + +        V  R E  G ++ G  +  DYAH    +   L+  R      R++V
Sbjct: 295 AMPVAMSACAGFGGVGRRMEQKGQSAAGALVVDDYAHHPTEIRATLQAARDCWPDKRLVV 354

Query: 387 VF 388
            F
Sbjct: 355 CF 356


>gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei DM98]
          Length = 303

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           L V +TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124


>gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 427

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 147/372 (39%), Gaps = 81/372 (21%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G  FVA+ G +  G+ FI  A+A+GA       A+ L D     R +   + V
Sbjct: 33  DSRQVTPGAAFVALPGTRTHGNAFIEDAVARGA-------AFVLTD-----RPHPKAVQV 80

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +  + L      L  + P  ++ VTG+ GK++    + Q                 ++ 
Sbjct: 81  QDPWQALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQ----------------GLAW 124

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
            A +  L TP    LA+   +L  Q                          G+   LG D
Sbjct: 125 PAPEGNLNTPP--ALARFFLHLPPQA------------------------PGAVVELGID 158

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GCRVLSVGY 272
            +   + Q+  F A+  +   +L   +PA + A    S EV+ R  +      RV     
Sbjct: 159 RVG--EMQELVFLAQPTI--GVLTAIAPAHLEALG--SLEVVAREKSQLLQASRVRIAST 212

Query: 273 QG-KFIHLKKVC------AIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAG 320
           Q  +++ L +V            + +TI+ EG  F +       P PG      AL A  
Sbjct: 213 QAARYLSLPEVRTYGFEEGTFQGRDLTITPEGTRFRYGQRTLHLPYPGYGPALGALAALA 272

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378
           +   +G D   V +HLE L + PGR   V    RGG +++  A+ +N  S+   L+++  
Sbjct: 273 VAEVLGQDLDQVCQHLEALRLPPGRMHLV---RRGGVLFIHDAYNANPASVRAGLESLDR 329

Query: 379 ITSGRIIVVFGC 390
              GR IVV G 
Sbjct: 330 F-PGRKIVVLGT 340


>gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
          Length = 453

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/382 (20%), Positives = 142/382 (37%), Gaps = 65/382 (17%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + +I +   DSR I  G +FV + G + DGH FI  A   GA   +   
Sbjct: 16  NDVSIF----EDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHDFIETAFENGAVVTLTEK 70

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             +          N P ++VD+        A+    K   N+ AVTG++GK++    +  
Sbjct: 71  EVA----------NHPYILVDDVLSAFQALAAYYLEKTAVNVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +        +  G  + +IG   T+     D                 +   G  H+   
Sbjct: 121 LLSTRYKTYKTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG-- 165

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFE-----ELLPKES 242
                 D H L  +     +   L G  H+ + + +      KM++ +      LL   +
Sbjct: 166 ------DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPA 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+ A     K+V++    A   +  +              I  K  +T +    + D 
Sbjct: 220 DPIVEAYLPADKKVVRFGQGAELEITDL--------------IERKDSLTFNANFLEQDL 265

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+ G++   NA++AA + +  G+    +    + L +   R E+    + G  I  D 
Sbjct: 266 DLPVTGKYNATNAMIAAYVALQEGVSEEQIRLAFQNLELTRNRTEWKKA-ANGADILSDV 324

Query: 362 YAHTSNSLEMILKNIRTITSGR 383
           Y     ++++IL+    I + +
Sbjct: 325 YNANPTAMKLILETFSAIPANK 346


>gi|260220017|emb|CBA27134.1| UDP-N-acetylmuramate--L-alanine ligase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 401

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 114/262 (43%), Gaps = 45/262 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++  S V  +   +GL  +F IG    ++S   + RL +            
Sbjct: 31  IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANARLGSGE---------- 78

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKM 231
                  H+ VEA     D   L+ + ++A   TN+  DH+     D+ + ++A+ +   
Sbjct: 79  -------HIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFGKLKKAFVD--- 125

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
             F   +P    AI+  DD   +++ ++     C + S G+ +   +    V A+  +  
Sbjct: 126 --FLHRMPFYGAAILCTDDPAVRDICEQVT---CPITSYGFNEDAEVRAVNVRAVGGQMH 180

Query: 291 VTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            T+     V   D + +  LPG   V NAL A  + + + I  A V++ L +   V  RF
Sbjct: 181 FTVQRRNGVVLPDMEVVLNLPGLHNVLNALSAIAVAVELNIPDAAVVKALAEFKGVGRRF 240

Query: 347 EFVGTNS--RGGRIYV--DYAH 364
           +  G  +  +GG + V  DY H
Sbjct: 241 QRYGDLALPQGGTVTVIDDYGH 262


>gi|309776032|ref|ZP_07671024.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916314|gb|EFP62062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 437

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 119/256 (46%), Gaps = 44/256 (17%)

Query: 119 AVTGTSGKSSVASFVQQICQ--RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALS 175
           A+TGT+GK+++ + + ++ +  +  + +  IG P S +                   AL 
Sbjct: 107 AITGTNGKTTITTMLYEMLKYNKKAIVAGNIGWPLSEL-------------------ALK 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAKMR 232
           Y + +    V++E     L   +L GI+  A S +   NL  DH+DY  + ++Y+ +KMR
Sbjct: 148 YEAEE--KDVALE-----LSNFQLLGIEHFAPSVSVVCNLAPDHLDYMPSVESYYESKMR 200

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQV 291
           +++    K+   +   DDA    V++ A N  C V+      + + L +K  A++ +   
Sbjct: 201 IYKN-CTKDDWFLRNVDDA---TVLQYAQNIPCTVIDFSLTRQDVDLYRKDGAVYLRD-- 254

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E K F  +    G++ + NA++AA +   +G+    + + +     V  R E++G 
Sbjct: 255 ILLFEEKSFHVV----GDYNLSNAMIAACMAYKLGVSVRDIQKAIASFQPVEHRLEYIGE 310

Query: 352 NSRGGRIYVDYAHTSN 367
            + G + Y D   T+ 
Sbjct: 311 KN-GVKFYNDSKATNT 325


>gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
 gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
          Length = 509

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 13/115 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R I+ G +F+A+ G   DGH F+ +A  +GA A +VS     + F        P
Sbjct: 28  NISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAVAAIVSEG-KYKSF--------P 78

Query: 92  ILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLS 143
           +++V +T K L   AS  Y ++      ++AVTG+ GK++    +  +  + G+S
Sbjct: 79  LMIVQDTLKALHDMAS-YYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVS 132


>gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei B7210]
          Length = 297

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           L V +TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124


>gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 9]
          Length = 298

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           L V +TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124


>gi|152967142|ref|YP_001362926.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
 gi|189028996|sp|A6WCX3|MURC_KINRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151361659|gb|ABS04662.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
          Length = 471

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 118/302 (39%), Gaps = 35/302 (11%)

Query: 83  SATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S+ +R+  P L+    R    L      A+ + G+     +AV GT GK++ +S +    
Sbjct: 84  SSAVRATNPELLAARERGVRVLHRSEALAALMAGR---AGVAVAGTHGKTTTSSMLAVAL 140

Query: 138 QRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +GL  S+ IG   T          + P          +++    +  S  A +  +D 
Sbjct: 141 TAAGLDPSYAIGGELTGGDDGGARDGSGP----------FVAEADESDGSFRAYAPVVDV 190

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN+  DH+D++ T +A+  A     + L P     +  ADD  S  +
Sbjct: 191 ------------VTNVEPDHLDHYGTAEAFAAAFEEFVDRLQPG-GLLVACADDPGSAAL 237

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              A   G RV + G      + L+ +        V +   G   +    +PGE  V NA
Sbjct: 238 AGHARGRGVRVRTYGASATADVRLRDLQPGAAASAVLVD-GGVPRELRLAVPGEHNVLNA 296

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A    + +G D   VLE L +      RFE  G  + G R+  DYAH    +E +L+ 
Sbjct: 297 AAAYCAAVELGADPVAVLEGLARFGGARRRFELKG-EAAGVRVVDDYAHHPTEVEALLRA 355

Query: 376 IR 377
            R
Sbjct: 356 AR 357


>gi|116328698|ref|YP_798418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330644|ref|YP_800362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121442|gb|ABJ79485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124333|gb|ABJ75604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 466

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 141/325 (43%), Gaps = 27/325 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL-QDFS 83
           ++E  I  V++ S  ++   +F+ + GN+ DGH FI  A+++GA   +V   + + ++F 
Sbjct: 25  YKESPITTVTTASTEVEKNSLFIPLRGNR-DGHEFIGDALSRGASYFLVEEDHPIRKNFD 83

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           +  R+    + V +T   L   A+    +    ++AVTG+SGK++    +   C    L 
Sbjct: 84  SKERAKA--IPVKDTLVSLGKLAAFHRSRFNPIVIAVTGSSGKTTTKEILGN-C----LK 136

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
           + +  P   ++    +N +  P  ++       +S +    V     +H  +  RL  I 
Sbjct: 137 NLE-EPVLVVTEKNYNNEIGLPFTLF------RISDRTRIVVCELGMNHKGEIARLTQIA 189

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAH 261
           K      T +G  HI++  +Q+    AK+ + E L+  +   + Y D   YSK +     
Sbjct: 190 KPDFALITTIGTAHIEFLGSQKNIAKAKVEVAEGLV--KGGKLFYPDTGEYSKILKSTLR 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G R++        +    + ++  K+     +E +D +  + LPG   + N  +A   
Sbjct: 248 RHGSRLI-------LVKPNHIFSVLQKRPSGFLLEYRDKEIEWNLPGYKLLENLAIAIAC 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346
              +G+ +  +L+ +     V  R 
Sbjct: 301 LETVGVPTEWILKGISTFKSVDKRL 325


>gi|227824969|ref|ZP_03989801.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
 gi|226905468|gb|EEH91386.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
          Length = 463

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 167/442 (37%), Gaps = 99/442 (22%)

Query: 53  KEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL- 109
           KE   +FI  A  Q   AE IVVS+A         I  + P LV  + R    +  S + 
Sbjct: 50  KEGALVFIGHAACQIERAEVIVVSTA---------IHPDNPELVEAHKRGVPVIHRSDVL 100

Query: 110 -YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTP 165
            Y  +    +AV G  GK++ +S +  I   +G     I PT  +         N +   
Sbjct: 101 AYLMNKHKGIAVAGAHGKTTTSSMLSLITCDNG-----IDPTVVVGGVVNNLGTNSVNGK 155

Query: 166 SPIYLAKAL----SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           S   +A+A     S+L  +    V                        TN+  DH+D++ 
Sbjct: 156 SDYVVAEADESDGSFLKFRPYLAV-----------------------ITNIENDHLDHYG 192

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T++    A  + F + + ++  AI+  D+   ++V +        V+S G   K      
Sbjct: 193 TEEKIQEA-FQQFVDQVKEQGKAILCYDN---EKVRRVGEKTATEVISYGIDAK------ 242

Query: 282 VCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSAL 331
             A +  + +    +G  +D LF           +PG   V NAL A      +G+    
Sbjct: 243 -DADYRAENIEYGKDGTHYDILFRGKKIGKGHLIVPGRHNVLNALGALAAARELGLSVEE 301

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   LEK      RFE  G   RG  +  DYAH    +++ LK  R     R+IVVF   
Sbjct: 302 ISRSLEKFTGAKRRFETKG-RVRGIWVVDDYAHHPTEIKVTLKAARQTQPKRLIVVF--- 357

Query: 392 GDRDQGKRPIMGKIALD-------LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
               Q  R    ++ LD        AD  IVTD    SEDP          IPG   K  
Sbjct: 358 ----QPHRYTRTQLLLDEFAVAFKEADELIVTDIYAASEDP----------IPGISGK-- 401

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
               +   I+    QDV  ++G
Sbjct: 402 ---MLAETIQRTTGQDVSYMSG 420


>gi|254513896|ref|ZP_05125957.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
 gi|219676139|gb|EED32504.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
          Length = 928

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 155/389 (39%), Gaps = 58/389 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I A+TGT+GK++ +  +  I + SGL+   +G TST   +  D RLT    +    A   
Sbjct: 493 IAAITGTNGKTTTSRMLAHILKMSGLT---VGQTSTDGVYI-DGRLTVAGDMTGPTAAQI 548

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L    V    +E +  G+ +  L   +    +  N+  DH+           A+++   
Sbjct: 549 VLRDPSVNAAVMETARGGILRSGLGYQRSNVSACLNIAADHLGLKGVNSLEDLAEVKRVV 608

Query: 236 ELLPKESPAIIYADDAYSKEV-------------MKRAH-------NAG--CRVLSVGYQ 273
             + +++ A++ ADD +  ++             M R+H        AG    VL  G  
Sbjct: 609 VEVARDA-AVLNADDVHCLQMADHCTAEKLCYVTMNRSHPLVREHIKAGGTALVLEQGIN 667

Query: 274 GKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G  I L      HN        +  ++EG+             V NA+ AA L   + ID
Sbjct: 668 GGMITLYDEQG-HNIPLLWTHLIPATLEGRAM---------HNVQNAMFAAALAYHMHID 717

Query: 329 SALVLEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGR 383
              + + L          PGR      +    ++ +DYAH   +++M+   + R    GR
Sbjct: 718 LENIRQGLRTFDSTFFQSPGRLNVY--DKHPFKVILDYAHNPAAVKMVCDVVDRYEIGGR 775

Query: 384 IIVVFGCGGDR-DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            IVV    GDR D+    + G  A          DDN R  +P ++ A +  G+      
Sbjct: 776 KIVVLTMPGDRRDEDIVEVAGIAAGHFDHYICRRDDNLRGREPSEVPALLKQGLLAGGVP 835

Query: 443 GNRI-------EAIRTAIEMLNKQDVLVV 464
            +RI       EA + A++M    D+L++
Sbjct: 836 EDRIQIIEREEEANQAALDMARGGDLLLI 864


>gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
 gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
          Length = 476

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 156/383 (40%), Gaps = 37/383 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S DSR ++ G  FVAI G++ DGH ++  A+  GA   +V     L D  A  R 
Sbjct: 26  EITGISIDSRTLEPGDAFVAITGDRLDGHDYVVSAMEAGASVALVGED-RLPDLPADGR- 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               +VVD+  + L         +    I+AVTG+ GK+     ++     SG       
Sbjct: 84  ---YVVVDDPLEALRKIGVAARDRSNARIVAVTGSVGKTGTKEALRLTLAESGKVH---- 136

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             ++++SF  +N      P+ LA+ +   +  GV  + +   +H  +   L  +K++   
Sbjct: 137 --ASVASF--NNHWGV--PLTLAR-MPADADFGVFEIGM---NHAGEISPL--VKMVRPH 184

Query: 209 ---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H+ +  + +    AK  +F+ L P    AI+  D+     +   A  AG 
Sbjct: 185 VVIITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPG-GIAILNKDNLQFDLLKFLAAAAGV 243

Query: 266 -RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            ++ + G       HL+K  +      V   + G++  +     G+  V N+L      +
Sbjct: 244 SKIHTFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAVLTAVV 303

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEM-----ILKNIR 377
            +G D A     L+ +    GR E      + G    +D ++ +N   M     +L    
Sbjct: 304 DLGADLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAVLGEAP 363

Query: 378 TITSGRIIVVFG----CGGDRDQ 396
               GR I V G     G D D+
Sbjct: 364 VTRPGRRIAVIGDMRELGSDADR 386


>gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
          Length = 476

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R +Q G +FVA+  +  DGH F+  A+ +GA A +VS           + S+ P+
Sbjct: 27  VSIDTRTLQPGDLFVAL-KDVRDGHDFVAMALEKGAAAALVSHRPD------GVASDAPL 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +  K L         +    I A+TG+ GK+S    ++ +  R G
Sbjct: 80  LVVPDVLKGLEALGIAARARSTARIAAITGSVGKTSTKEMLRTVLSRQG 128


>gi|328676147|gb|AEB27017.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida Fx1]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 143/368 (38%), Gaps = 44/368 (11%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA+TGT GK++ +S +  + CQ    SSF +G    +  +A  N                
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGG---VVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L    +I    TN+  DH+    T    +   +  F +
Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            + KES   IY   DD   ++++ + +     V S G+     + +     I       I
Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQLDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G D  F   LPG++ V NA      C+ +G     +   L K+  V  RF+      
Sbjct: 261 RYKGDDLSFKLQLPGKYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            G ++ V  DY H    +   +  +R    + +II VF     R    R ++     AL 
Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPEALS 378

Query: 409 LADIAIVTDDNPRSEDPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD  I+    P     E+I       +I  G+ G++       AI    ++ N+  V++
Sbjct: 379 LADQLILL---PTYSAGEQIIKGAESQDIAKGLSGYLLADGFDHAIYFLEKLANENTVIL 435

Query: 464 VAGKGHET 471
           + G G  T
Sbjct: 436 IQGAGDVT 443


>gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 459

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P     + IN + +DSR  Q+G +FVA++G   D H F+   +A+GA A+V     S  
Sbjct: 20  LPKPQTNQTINRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALV-----SRD 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           DF       +  L VD+T   L   A          +  +TG+SGK++V   +  + + 
Sbjct: 75  DFVGV----SGCLKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLATVLRE 129


>gi|262038067|ref|ZP_06011472.1| tetrahydrofolate synthase [Leptotrichia goodfellowii F0264]
 gi|261747887|gb|EEY35321.1| tetrahydrofolate synthase [Leptotrichia goodfellowii F0264]
          Length = 426

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 127/327 (38%), Gaps = 78/327 (23%)

Query: 109 LYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLT 163
           L GK  +N  I+ + GT+GK S ASF++ I   +G S  +      +        D ++ 
Sbjct: 31  LLGKPCKNNKIIHIAGTNGKGSTASFIENILTAAGYSVCKFTSPHILKYNERIVSDKKMI 90

Query: 164 TPSPIYLAK-----------------------------ALSYLSSQGVTHVSVEASSHGL 194
           T   I                                 AL Y   Q    + +E    G 
Sbjct: 91  TNEEILQNYSIIKGTVSNYNKSGSNEINLNFFEITTFIALLYFQKQNPDFIVLETGLGG- 149

Query: 195 DQHRLDGIKLIAGSF---TNLGRDHIDY--HQTQQAYF-------NAKMRLFEELLPKES 242
              RLD   ++  +    TN+  DH++   +  QQ  +       N ++ ++ + LP+  
Sbjct: 150 ---RLDATNIVDSNISVITNITFDHVNILGNTLQQIAYEKAGIIKNGELCIYSDNLPELK 206

Query: 243 PAIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             I   D   SK   V+++  N    +    Y       K V    NK+           
Sbjct: 207 KEI---DKKTSKAINVIEKYKNIEIELDKKNY-------KTVLYFENKR----------- 245

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F+ PL G+FQ YN L+A  +     I   ++ + L+ ++  P RFEF    S+   I +
Sbjct: 246 -FILPLFGKFQAYNFLIAYEIAKIYNIHDKVIQKGLDNVY-WPARFEFY---SKNPTIIL 300

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           D AH  +S++ + +N++ +     +++
Sbjct: 301 DAAHNDDSIKKLSENLKELYKKNEVII 327


>gi|254479394|ref|ZP_05092727.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
 gi|214034663|gb|EEB75404.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
          Length = 857

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 156/377 (41%), Gaps = 40/377 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK++V   V  I +  G   + +G T+T   +  D  +          A + 
Sbjct: 458 IVSITGTNGKTTVTRMVAHILKTYG---YTVGMTTTDGIYIDDKCIYKGDNTGPKSARTC 514

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID   T +  A+  A   
Sbjct: 515 LADKNIDAAVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKA--- 571

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-----VCAIHN 287
           L  E +  +  +++ ADD  +  + K+A     +++        + +K+       A++ 
Sbjct: 572 LVVEAVKDDGYSVLNADDPMTPYLAKKAKG---KIIYFSMYDNNLTVKRHIENGGIAVYV 628

Query: 288 KQQVTISVEGKDFDF--LFPLPGEF------QVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K+ V +   G+      +  +P          + N+L A      + +   ++ + ++  
Sbjct: 629 KEGVIVIANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTF 688

Query: 340 HV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           +      PGRF      S   R+ VDY H    ++ +++  R + + R+I V G  GDR 
Sbjct: 689 YPDTTHNPGRFNLFNIGSF--RVLVDYGHNVEGIKKVIEAARKLDANRLIGVIGVPGDRM 746

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN------RIE 447
                 +G++     D   + +D       +   A+I+    I G ++K N        E
Sbjct: 747 DSSIFKVGEVCGKGFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKETE 806

Query: 448 AIRTAIEMLNKQDVLVV 464
           A++ A+      D++VV
Sbjct: 807 ALKAAMHSAEAGDLIVV 823


>gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 514

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 138/315 (43%), Gaps = 59/315 (18%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA-----------IVV--SSAYSL 79
           V  DSR++ AG +F+ + G + DGH F   A+ QGA A           I+V  S A  L
Sbjct: 31  VEFDSRNVSAGSLFICLPGARVDGHDFAGIAVDQGAVACLEGHRTGQPGILVDNSDADEL 90

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPE--------NILAVTGTSGKSSV 129
            D SAT    + +L  DNT +  ++    S+L   H +         ++ VTG++GK+S 
Sbjct: 91  SD-SAT----SYVLEADNTGEGQAVITALSKLARAHTKKAVEENGLTVIGVTGSAGKTST 145

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVE 188
              +  + +++G +   + P  +      +N L  P + + + +  +YL    V+ +S  
Sbjct: 146 KDLIASVLRQAGET---VAPPGSF-----NNELGHPYTALKVGEHTTYL----VSELSAR 193

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AII 246
           A  +     R+   ++  G+  N+G  HI    +++    AK  L E L P      A++
Sbjct: 194 AIGNIAHLARIAPPRI--GAVLNVGTAHIGEFGSKENIAQAKGELVEALPPAADGGVAVL 251

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY------QGKFIHLKKVCAIHNKQQVTISVEG-KD 299
            ADD     V+   +    R+++ G       + + + L  V     +   T+ +EG K 
Sbjct: 252 NADDPL---VIGMRNRTSARIVTFGMDNPATVRAEDVELDAVA----RAAFTLCIEGEKA 304

Query: 300 FDFLFPLPGEFQVYN 314
                 + G  QVYN
Sbjct: 305 RRIQLRVFGRHQVYN 319


>gi|307332564|ref|ZP_07611614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881785|gb|EFN12921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 483

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 35/211 (16%)

Query: 62  QAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + + +G E IV +  +      F A   +N PI             A RL G+     LA
Sbjct: 72  ETLPKGTELIVTTPGWKPTSPLFLAAAEANVPIW-------GDVELAWRLRGEDAPPWLA 124

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++    +  I + +GL +  +G                   I ++     L  
Sbjct: 125 VTGTNGKTTTVRMLAAILEAAGLRTAAVGN------------------IGVSLLDIVLGD 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    ++VE SS+ L  H    ++  +G+  NL  DH+D+H +  AY   K R++E    
Sbjct: 167 EPYDVLAVELSSYQL--HWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYE---- 220

Query: 240 KESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
               A +Y  AD A    V       GCR +
Sbjct: 221 GNQVACVYNVADPATEDLVRAADVEEGCRAI 251


>gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
 gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
          Length = 481

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 37/374 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV+  + L  F  T    
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++ +SF  +N      P+ LA+  + +   GV  + +  + HG  +  +  +       
Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVCPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE ++P    A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Y+ + + L   C+      +T+ +   +      +PG   V N L   G  
Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375
             +G D A V+  +  L    GR    V  +  G    +D ++ +N      +L ++   
Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368

Query: 376 IRTITSGRIIVVFG 389
           +   + GR I V G
Sbjct: 369 VPEGSRGRRIAVLG 382


>gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
 gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
          Length = 477

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DLLGAMNGRPVGNLPEGITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIALANGAALLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VVD+  + +         +    I+AVTG+ GK++    
Sbjct: 69  VSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSG 141
           ++ +    G
Sbjct: 125 LRHMLSPLG 133


>gi|289579519|ref|YP_003478146.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9]
 gi|289529232|gb|ADD03584.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9]
          Length = 876

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 155/374 (41%), Gaps = 34/374 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK++V      I +  G   + +G T T   +  D  +          A + 
Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID  +T +     K  L 
Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIKTLEDLAFVK-SLV 595

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQ 290
            E + ++  +++ ADD  +  + +RA   G  +    Y       K V     A++ K  
Sbjct: 596 VEAVKEDGYSVLNADDLMTPYLAQRAK--GKVIYFSMYDNNLTVKKHVEKGGIAVYVKDG 653

Query: 291 VTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341
           V +   G      K  +    L G+  + V NAL A      + +   ++ + ++  +  
Sbjct: 654 VIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCD 713

Query: 342 ---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGRF     N    R+ VDY H    ++ +++  + + + R+I V G  GDR    
Sbjct: 714 TTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSS 771

Query: 399 RPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKG------NRIEAIR 450
              +G+I  +  D   + +D + R   P ++   +  G I G +++          EA++
Sbjct: 772 ILKVGEICGEGFDFIYIKEDVDLRGRKPGEVAKILEEGAIKGGMDRKKIKIILKETEALK 831

Query: 451 TAIEMLNKQDVLVV 464
            A+      D++VV
Sbjct: 832 AAMYHAEAGDLIVV 845


>gi|311029926|ref|ZP_07708016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           m3-13]
          Length = 449

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 112/271 (41%), Gaps = 39/271 (14%)

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQH--- 197
           ++QI     I     + + TT + I     A   S L +  + +VSVE +    ++    
Sbjct: 106 AYQISEAPIIGITGSNGKTTTTTLIDEMLAADKKSPLIAGNIGNVSVEVAQQATEKDIMV 165

Query: 198 -RLDGIKLIAGS--------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             L   +L+           F NL   H+DYH T   Y  AK ++F     KE  A++ A
Sbjct: 166 TELSSFQLMGTDIFRPKISVFLNLFEAHLDYHGTLDEYGKAKAKIFFN-QTKEDYAVVNA 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DDA   +VMK +      ++         G ++    VC    K +  IS++        
Sbjct: 225 DDA---QVMKLSEGIQPTIVPFSTNKTVDGAYLKDNYVCF---KDEKIISIDQ------I 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG+  + N L A       G+ +  ++E L +   V  R +F+G   R GR + + + 
Sbjct: 273 VLPGKHNLENILAAVAAVKLSGVSNEAIIEVLTRFSGVKHRLQFIG--ERDGRRFYNDSK 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
            +N    IL   + +++    VV   GG DR
Sbjct: 331 ATN----ILATQKALSAFENNVVLLAGGLDR 357


>gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 496

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 29/241 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-----------AIVVSSAYSLQD 81
           V  DSR + +G +FVA+ G K DGH +   A+ QGA            A++V  A  +  
Sbjct: 30  VEFDSRKVASGDLFVALSGVKVDGHDYAATAMDQGAAGVLAARPVGVPAVIVPPATEVDH 89

Query: 82  FSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            S     +T      V++   K       +L  +    ++ +TG++GK+S    V  I +
Sbjct: 90  HSYATEHDTDGSVAAVLEGMAKLARHVVDKLSAR-GLTVIGITGSAGKTSTKDIVHTILE 148

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G +    G  +            T +  YL   +S  S   + H++  A  H      
Sbjct: 149 LAGDTVAPPGSFNNEIGHPYTALRCTETTKYLVSEMSARSIGNIAHLAAIAPPH------ 202

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                   G   N+G  H+    ++     AK  L E  LP +  A++ ADD Y   +  
Sbjct: 203 -------IGVVLNVGTAHMGEFGSRDNIARAKGELVEA-LPADGIAVLNADDDYVAAMAD 254

Query: 259 R 259
           R
Sbjct: 255 R 255


>gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
 gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
          Length = 455

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR + AG +FVA+ G + DGH ++    A+GA A +V    +  D         P 
Sbjct: 28  VSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVADVDL--------PQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           L+V + R  L    +       + ++A+TG+SGK++V   +  I +  GL
Sbjct: 80  LLVADCRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGL 129


>gi|56707396|ref|YP_169292.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669867|ref|YP_666424.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456471|ref|ZP_03664944.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370904|ref|ZP_04986909.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874234|ref|ZP_05246944.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|68565692|sp|Q5NI50|MURC_FRATT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123169630|sp|Q14JK2|MURC_FRAT1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56603888|emb|CAG44872.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320200|emb|CAL08255.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569147|gb|EDN34801.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840233|gb|EET18669.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158535|gb|ADA77926.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 144/367 (39%), Gaps = 42/367 (11%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+TGT GK++ +S +  + CQ    SSF +G    +  +A  N                
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L    +I    TN+  DH+    T    +   +  F +
Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            + KES   IY   DD   ++++ + + +   V S G+     + +     I       I
Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +  D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      
Sbjct: 261 RYKDDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            G ++ V  DY H    +   +  +R    + +II VF     R    R ++     AL 
Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378

Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           LAD  I+      S D + I+     +I+ G+ G++       AI    ++ N+  V+++
Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILI 436

Query: 465 AGKGHET 471
            G G  T
Sbjct: 437 QGAGDVT 443


>gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 450

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 166/403 (41%), Gaps = 56/403 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I   S +S+ I    +F+ + GNK DGH FI +AI++GA + +                +
Sbjct: 25  IESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEAISRGAISFITQK-------DVNTEKS 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQIC-------QRSG 141
            P L V++T K + + A     K  + I + +TG+ GK++   +V  +        +  G
Sbjct: 78  CPYLKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGKTTTKEYVFNVLSNKFRSYKNEG 137

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLD 200
             +  IG   +I        L  P  + +A     +S+ G ++ +S  A  +        
Sbjct: 138 NFNNHIGLPYSI--------LNIPDEVKVATLEMGMSNFGEISFLSKIAKPN-------- 181

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                 G  TN+G  HI+  +T+   F AK  + ++ +P +   II  D+     +    
Sbjct: 182 -----IGIITNIGVAHIENLKTRYNIFLAKSEI-QDGMPNDGILIINNDNDI---LYSHR 232

Query: 261 HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           H    +V++VG +       K +  + N     +S    +  +         +YN+L A 
Sbjct: 233 HELKRKVVTVGIENDADFRAKDIQKVDNGFFFVVS----NHKYFIESFNFHDIYNSLFAI 288

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   +GI+   + + + K   +  RFE +    + G   VD ++ +++  M +  I  +
Sbjct: 289 AVGEILGIEKEAIEKGILKKCGLRRRFEVI---KKDGLTVVDDSYNASTHSM-MSAINGV 344

Query: 380 T--SGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVT 416
              SG+ I+V G     G   +Q  R +   I     D+ I T
Sbjct: 345 CGFSGKKILVLGDMLELGEFSEQEHRKVGKYIVSKPIDVIICT 387


>gi|297545642|ref|YP_003677944.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843417|gb|ADH61933.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 876

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 132/320 (41%), Gaps = 26/320 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK++V      I +  G   + +G T T   +  D  +          A + 
Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID  +T +     K  L 
Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIKTLEDLAFVK-SLV 595

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQ 290
            E + ++  +++ ADD  +  + +RA   G  +    Y       K V     A++ K  
Sbjct: 596 VEAVKEDGYSVLNADDPMTPYLAQRAK--GKVIYFSMYDNNLTVKKHVEKGGIAVYVKDG 653

Query: 291 VTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341
           V +   G      K  +    L G+  + V NAL A      + +   ++ + ++  +  
Sbjct: 654 VIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCD 713

Query: 342 ---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGRF     N    R+ VDY H    ++ +++  + + + R+I V G  GDR    
Sbjct: 714 TTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSS 771

Query: 399 RPIMGKIALDLADIAIVTDD 418
              +G+I  +  D   + +D
Sbjct: 772 ILKVGEICGEGFDFIYIKED 791


>gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
 gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
          Length = 455

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 8/109 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR + AG +FVA+ G + DGH ++    A+GA A +V    +  D         P 
Sbjct: 28  VSIDSRSVGAGELFVALAGPRFDGHDYLADVQAKGAVAALVEREVANVDL--------PQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV ++R  L    +     + + ++A+TG+SGK++V   +  I +  G
Sbjct: 80  LVVADSRLALGQLGALNRAGYDKPVVAITGSSGKTTVKEMLACILRTRG 128


>gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
 gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
          Length = 449

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 156/384 (40%), Gaps = 71/384 (18%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KY 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143
            I++VD+  + L   A           +A+TG+ GK+S    ++   Q         G  
Sbjct: 75  KIILVDDCFEALQKIALYKRENSKAKFIAITGSVGKTSTKEALKVSLQHDFLVFASRGNF 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + ++G    ++S A D    T   I+           G+ H        G  +  +  +K
Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258
                 TN+   H+++  + +    AK  +F     K   A+I AD + Y+K   ++K  
Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233

Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308
                    R+      ++     G+ ++LK              +  K  D   P +P 
Sbjct: 234 SITDIHSFGRSSKTSAELILYENLGEQVYLK------------YKINNKVLDVTIPFIPR 281

Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            F + Y  ++   L I I G D  +   HL  +    GR E +  N +  R+  DY + S
Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEMI--NIQNCRVICDYYNAS 336

Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389
             S++  L+ ++ + +     + G
Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360


>gi|146299078|ref|YP_001193669.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium johnsoniae
           UW101]
 gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101]
          Length = 822

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 42/331 (12%)

Query: 30  INEVSSDSRHIQAG--WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++ +S DSR +Q G   +F+A+ G   D HL+I + I +G +       +++Q     ++
Sbjct: 25  VDHISIDSRSLQNGPQTLFIALSGANNDAHLYIAELIEKGVQ------NFAVQYIPENVK 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                 VV NT K L   A+         I+ +TG++GK+ V  ++          +F +
Sbjct: 79  GKANFFVVKNTLKALQELAAYYRDLFDFPIIGLTGSNGKTIVKEWL----------NFLL 128

Query: 148 GPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            P   I  S  + ++++  P  +    A++   + G+    +   +  ++  ++  IK  
Sbjct: 129 SPDYNIIRSPKSYNSQVGVPLSVI---AINEKHNLGIFEAGISTVNEMVNLEKI--IKPN 183

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHN 262
            G  TN+G  H +  +      N K+ LF     K+S  IIY  +    + +      + 
Sbjct: 184 IGVLTNIGSAHDEGFENLTQKINEKLLLF-----KKSAVIIYQKNELVDKCLLDFSAQYP 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKD--FDFLFPLPGEFQVYNAL 316
              R L   +   F        I  K+      TI  + KD  F+   P      + NA+
Sbjct: 239 LENRAL---FSWSFADASADVFILKKETKNDSTTIKYQYKDEIFNLEIPFSDSASIENAI 295

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               + +    D  ++   +E L+ V  R E
Sbjct: 296 SCLLVLLHFEYDFTIIQNRMEMLYPVEMRLE 326


>gi|168182271|ref|ZP_02616935.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Bf]
 gi|182674522|gb|EDT86483.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Bf]
          Length = 873

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 148/357 (41%), Gaps = 47/357 (13%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +S  ++G T+T   +  +  +          A + L+++ V    +E +  GL +  L  
Sbjct: 501 ISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIKAGLPY 560

Query: 202 IKLIAGSFTNLGRDHI---DYHQTQQ-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH+   D +  +  AY  A   L  E + K+   +I ADD  S  ++
Sbjct: 561 DLADVGIITNVTEDHLGLGDINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASINII 617

Query: 258 KRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            R  +                    + L +   G  I+LKK+    NK +  I+V     
Sbjct: 618 NRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN---- 669

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH---VVPGRFEFVGTNSRG 355
                L G+  + V NA+ A    IA+G+D   + + LE  +     PGRF     N  G
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFNNEEQNPGRFNMY--NVHG 727

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAI 414
             + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D I I
Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIYI 787

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRI-----EAIRTAIEMLNKQDVLVV 464
             D + R     +I   +  GI   GF      I     EA++ AIE  N  D++++
Sbjct: 788 KEDRDKRGRKDGEIVDLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVIM 844


>gi|85714969|ref|ZP_01045954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
 gi|85698166|gb|EAQ36038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
          Length = 465

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 25/291 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S DSR I  G  + AI G+  DGH F+  A+  GA   VV +A   Q F+A    +
Sbjct: 17  INGISIDSRTIAPGEAYFAIKGDVHDGHAFVDAALRAGAALAVVEAAQRDQ-FAA----D 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L+VD+    L   A     +    ++AVTG+ GK+S    ++ +    G +      
Sbjct: 72  APLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSVVDAQGKTH----- 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            ++++SF  +N    P  +    A +  +    G+ H        G     +  ++    
Sbjct: 127 -ASVASF--NNHWGVPLSLARCPADARFAVFEIGMNHA-------GEITPLVKMVRPHVA 176

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CR 266
             T +   H+++    +A  +AK  +FE + P  +  ++  D+A    +  RA   G  R
Sbjct: 177 VITTVEPVHLEFFAGIEAIADAKAEIFEGVEPNGA-VVLNRDNAQFARLHGRAKKLGIAR 235

Query: 267 VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           ++S G   K        A+H     V   + G +  +   +PG     N+L
Sbjct: 236 IVSFGADEKADARLLDVALHPTCSAVHAEILGHELTYKLGMPGRHIAMNSL 286


>gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
 gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
          Length = 457

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 143/353 (40%), Gaps = 42/353 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L      EL+ +  +F           V +DSR+I  G +F+A+ G + DGH ++
Sbjct: 2   MRLSELAAAVGGELVGEDVLF---------TSVGTDSRNIVPGQLFIALRGERFDGHAYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  GA A +V+ A      +A +       VV NTR  L   A+    +    + A+
Sbjct: 53  LQALQSGAAAALVAEAQP--GMAAGV-------VVKNTRLALGQLAAVWRNRFSIPVAAI 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   V  I +     S  +   +T  +   D  L              ++  
Sbjct: 104 TGSNGKTTVKEMVASILRAEAGDSNAV--LATRGNLNNDIGLPLTLLRLRPSHKYTVAEM 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+ H         L Q     + L+     N    H+    + +    AK  +FE  L  
Sbjct: 162 GMNHFG---EIRYLSQMARPTVALV----NNATSAHLGGLGSVEGIARAKGEIFEG-LAL 213

Query: 241 ESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           E  A+I ADD Y+    + A  H+    +L+ G       +  V A +  +  T  V  K
Sbjct: 214 EGMAVINADDLYAPLWTELAGEHD----ILTFG----LAKMADVTANYELRADTSYVYMK 265

Query: 299 D----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                  F   + G   V NAL A+ + IA+G     + + LE    V GR +
Sbjct: 266 SPIGGIAFNLQVAGLHNVRNALAASTVAIAMGARPESIAKGLEAFDGVDGRLQ 318


>gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 14]
          Length = 272

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           L V +TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124


>gi|94987547|ref|YP_595480.1| UDP-N-acetylmuramate--L-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224699|sp|Q1MPB8|MURC_LAWIP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94731796|emb|CAJ55159.1| UDP-N-acetylmuramate-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 453

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 8/180 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+DY+++ +   +A +  F   +P     ++  DD   + V+ R +    +V++
Sbjct: 179 TNIDLDHLDYYRSFEEIEHAFVT-FMNNVPFYGMNVVCGDDPGVQRVLPRVNR---QVIT 234

Query: 270 VGYQGKFIHLKKV--CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G++       ++  C I N+ +V    E    + +   PG+  + NAL A G+ + +GI
Sbjct: 235 YGFESSNHIWAEIIECGIINRFKVIAHGECLG-EVILTQPGKHNILNALAAIGVALEVGI 293

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                +E L     V  RFE+ G  + G  +  DY H    +   L+  R +   R IVV
Sbjct: 294 SPKCCIEGLANFKGVGRRFEYKGEKN-GITVIDDYGHHPIEVAATLETARKVFPDRRIVV 352


>gi|327468991|gb|EGF14463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK330]
          Length = 456

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 160/383 (41%), Gaps = 64/383 (16%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    +     DSR I++G +FV + G + DGH FI  A AQGA A +           
Sbjct: 20  QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERP------- 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
             +   T ILV D    FL L A     K   ++LAVTG++GK++    + Q+       
Sbjct: 72  --VAEGTYILVDDVLTSFLRL-AQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKT 128

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   T+    +D                 +   G  H+         D 
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167

Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD     +
Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD-----K 221

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEF 310
           ++     A C+++  G     I L ++     +++ ++S E    +FL      P+ G++
Sbjct: 222 IVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLPVTGKY 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA++AA   +  GI  A + +   +L +   R E+    + G  I  D Y     ++
Sbjct: 274 NATNAMIAAYAALQEGISEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAM 332

Query: 370 EMILKNIRTITS---GRIIVVFG 389
            +IL+   TI +   GR + V  
Sbjct: 333 RLILETFSTIPTNLGGRKLAVLA 355


>gi|237739356|ref|ZP_04569837.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31]
 gi|229422964|gb|EEO38011.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31]
          Length = 463

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 22/194 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGC 265
           TN+  DH+D H       N K    E +L  +  +II  D   SK +M    K       
Sbjct: 173 TNIDADHLDVHGNLD---NIKKSFIEFILHTQKESIICMD---SKNLMDAILKLPEGKSV 226

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              S+  +   I+ K +  +  K   +V ++ E K  +F   +PGE  + N+L    L +
Sbjct: 227 TTYSIKDENADIYAKNIRIVDRKTIFEVYVNKELKG-EFSLNIPGEHNIQNSLPVIYLAL 285

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILK 374
             G++   + E L +      R++ +         G+ ++  RI  DYAH    ++  LK
Sbjct: 286 KFGLNKDEIQEALNQFKGSKRRYDVLYDQELENGYGSKTKRVRIVDDYAHHPTEIKATLK 345

Query: 375 NIRTITSGRIIVVF 388
            I+++ S R++ +F
Sbjct: 346 AIKSVDSSRLVAIF 359


>gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 509

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 44/258 (17%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV-------------- 72
           ER    V  DSR + +G +FVA+ G + DGH F  +AI QGA A++              
Sbjct: 25  ERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAEKAIEQGAVAVLAARPVGVPAIIVKP 84

Query: 73  ---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              V+   +  D  A     +   V+           SRL  +   +I+ VTG++GK+S 
Sbjct: 85  QGRVTGDAANADIYANDEDGSAAAVIGALSNLAREVTSRLAAEQGLDIVGVTGSAGKTST 144

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTH 184
              +  I +  G +   + P  +      +N +  P             ++ +S++G+ H
Sbjct: 145 KDLLATIFRAEGET---VAPPGSF-----NNEVGLPYTALRCDEHTRFLVAEMSARGIGH 196

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
           +          +H  +      G   N+G  H+    +++    AK  L  E LP  +  
Sbjct: 197 I----------RHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELI-EALPAAADG 245

Query: 244 --AIIYADDAYSKEVMKR 259
             A++ ADD +   +  R
Sbjct: 246 GVAVLNADDPFVASMAPR 263


>gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 468

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 33/220 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R    G +FVA  G   DGH + PQA   GA A++ S   +L           P +VV
Sbjct: 27  DGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGAVAVLGSRPTTL-----------PTVVV 75

Query: 96  DNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152
           D+ +  L   A+ +    +    ++A+TG+ GK+S    ++ +     LSS    PT +T
Sbjct: 76  DDAQAALQRLAAHVVALLRDGLTVVAITGSQGKTSTKDMIEAV-----LSSAA--PTVAT 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             SF  +N L  P  +  A A +   +   G  H+   A   GL       +       T
Sbjct: 129 SGSF--NNELGVPLTMLRADATTRFLVLEMGARHIGDIAELTGL-------VAPDIAVVT 179

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           N+G+ H+    +++A   AK  L   L    + A+++ADD
Sbjct: 180 NVGQAHLGEFGSREAIAVAKSELVRGLAGGGT-AVLHADD 218


>gi|295098905|emb|CBK87994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           cylindroides T2-87]
          Length = 436

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 40/272 (14%)

Query: 119 AVTGTSGKSSVASFVQQI--CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           AVTGT GK++V + + ++   +   L +  IG               TP        L+ 
Sbjct: 106 AVTGTDGKTTVTTLLYEMLNAKEKALVAGNIG---------------TP-----LSELAL 145

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +   +V++E S+  L    +D  +      TNL  DH+DY  + + Y+ +KM +++ 
Sbjct: 146 IHQEETFNVALELSNFQL--LGIDTFQPKISVVTNLAPDHLDYMDSLEEYYQSKMLIYKN 203

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +   I   DD   + ++K A N  C+V++     +    K     + K ++   + 
Sbjct: 204 -CNSQDWFIRNIDD---ENIVKYAQNIPCQVINFSLTQEADLYKDDTFAYLKDEILFKLS 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    + G+F   NA++AA +   +GID   +   +     V  R E+V T   G 
Sbjct: 260 D------LKIVGDFNCGNAMMAACMAYKMGIDLETIQSVIRSFKGVEHRIEYVNT-INGV 312

Query: 357 RIYVDYAHTSN-----SLEMILKNIRTITSGR 383
           R Y D   T+      +L    KN+  +  G+
Sbjct: 313 RFYNDSKATNTHAACAALSAFDKNVILLCGGK 344


>gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
 gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
          Length = 452

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 168/391 (42%), Gaps = 48/391 (12%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E   + V +D+R +  G +FVA+ G+  DG+ F+  A+  GA A + S A        
Sbjct: 19  FGEASFSNVCTDTRSVSPGDLFVALAGDHYDGNQFVSDAVIAGAVAAITSEA-------- 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGLS 143
            + +  P + VD+TR  L   A     +    ++A+TG++GK++    V +I C+R  + 
Sbjct: 71  -VTAAIPSVKVDDTRFALGQIARLNRRRFSGPVVALTGSAGKTTTKEMVARILCERGEV- 128

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                  +T ++F  +N +  P  +     L+   S     V + AS  G   +     +
Sbjct: 129 ------LATEANF--NNEIGVPLTL-----LAIDPSHQFAVVEMGASHIGDIAYLTQFAE 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN    HI+   + +A    K  +FE  LP+   AII  D+ + ++ +++A  A
Sbjct: 176 PTIAVLTNAMAVHIEGFGSIEAVAKTKGEIFEN-LPEGGVAIINQDEPFFQQWLQQAGKA 234

Query: 264 GCRVL-----SVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                     S  Y    IH++     V  +H  QQ TI+++         L GE  V N
Sbjct: 235 SVVTFSKYDTSANYYASNIHIQTNASTVFELHLAQQ-TITIK-------LALLGEHNVLN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ AA   +  G     V + LE +  V GR +    ++R   +  D  + S    M   
Sbjct: 287 AVAAAAAAMTAGATVDDVKKGLESVRPVDGRLKASADSNR--TVIDDTYNASPGSVMAAI 344

Query: 375 NIRTITSGRIIVVFGC----GGDRDQGKRPI 401
           ++ +  SGR  ++ G     GG  ++  R +
Sbjct: 345 DVLSGFSGRRCLILGTMAELGGLAEKSHRDV 375


>gi|46446265|ref|YP_007630.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 841

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 20/145 (13%)

Query: 30  INEVSSDSRHIQA-GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT--- 85
           I+++  DSRH+ +   +FVA+ G K+DGH F+ QA   GA+  +VS  ++   F+     
Sbjct: 25  IDQIIIDSRHVNSSNALFVALKGEKQDGHDFVQQAAELGAKYALVSEQWT-PPFNLKPIF 83

Query: 86  -IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-------IC 137
            ++  +P+  +    K     A RL  + P  I+ +TGT GK+ V   + Q       +C
Sbjct: 84  LLKVKSPLSALQEVAK-----AYRL--QLPTKIIGITGTYGKTMVKDLLFQLLSTEKNVC 136

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL 162
              G  + QIG   ++ +  +D  L
Sbjct: 137 ASPGSFNSQIGVALSLLTIQKDQEL 161


>gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
 gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
          Length = 434

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 160/414 (38%), Gaps = 76/414 (18%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER +  V++DSR      +FV IVG + DGH +I  A+ +GA            D     
Sbjct: 20  ERLVERVATDSRDANEAGLFVPIVGARVDGHDYIEAAVEKGAIVTFWEEGRPQPD----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR------- 139
             N  ++ V +T + L   A+R   +    ++A+TG++GK+S    V  + +        
Sbjct: 75  --NLVVIPVKSTVEALQTAAARYLEEINPLVVAITGSNGKTSTKDMVAVVLEEKFKTHKT 132

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTT----PSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +G  +  +G   T+    +D  +       +     + LS L+   V  V+    SHG  
Sbjct: 133 AGNFNSDVGLPLTVLRMPRDTEVAVLEMGMNGFGQIETLSKLAKPDVAFVTNIGESHGEQ 192

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----EELLPKESPAIIYADDA 251
                      G  T + +  ++     +A   A  RL     E LL  +   + Y + A
Sbjct: 193 ----------VGGRTGIAKAKLEI----KAGLKADGRLIVDADEPLLSGQGYRVGYDETA 238

Query: 252 YSK-EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             K EV++   +A        Y G    LK +                         G  
Sbjct: 239 DGKIEVIETTFDASI----FKYNGDLYELKVL-------------------------GAH 269

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q+ NA  A    +A G+D A++   L+++ +   R E       G    ++ A+ ++   
Sbjct: 270 QIRNAAYAIACGLAFGLDHAMIQRGLDRIKLTSMRME---KQMFGEAHLINDAYNASPTS 326

Query: 371 MI--LKNIRTIT--SGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           MI  ++ I+++   S R++V+   +  G D       + G +   + D  +V D
Sbjct: 327 MIAAIETIKSLEGFSKRVLVLGDMYELGADEQMQHEQVGGAVTSPVTDCILVGD 380


>gi|260775368|ref|ZP_05884265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608549|gb|EEX34714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 441

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 116/287 (40%), Gaps = 57/287 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      +   +G+ +            A    +  P       AL  
Sbjct: 112 VVAITGSNGKSTVTDLTGVVANAAGVKT------------AIGGNIGVP-------ALEL 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L      +V +E SS  L+      + L A +F NL  DH+D +   + Y  AK+R+FE+
Sbjct: 153 LDQDAELYV-LELSSFQLETTS--SLSLKAAAFLNLSEDHMDRYDDMEGYRQAKLRIFEQ 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   I+ ADD  +    K A                  L+K C  H K      VE
Sbjct: 210 ----AQTCIVNADDPATYPDKKDAPLVE------------FSLEKSCEFHVK-----VVE 248

Query: 297 GKDF-----------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           G+++           D L  L G   V NALV   L    G+D +L ++ L+  + +  R
Sbjct: 249 GREYLCHQDAKILASDEL-SLVGRHNVANALVVLALLEQAGVDISLGIDALKSYNGLTHR 307

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + V  N+  G  +V+ +  +N    +        SG++ ++ G  G
Sbjct: 308 CQVVADNN--GVKWVNDSKATNVASTLAALSGLSLSGKLYLLVGGDG 352


>gi|332670128|ref|YP_004453136.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332339166|gb|AEE45749.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 474

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 147/382 (38%), Gaps = 67/382 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSG 125
           A+ +VVSSA         +R + P L     R    L  S          + +AV G  G
Sbjct: 67  ADTLVVSSA---------VRESNPELAAARARGLRVLHRSEALAALMADRDAVAVAGAHG 117

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++ ++        +G   SF IG T      A         P ++A+A     S+L+ +
Sbjct: 118 KTTTSAMAATALLHAGADPSFAIGGTVLTVDGALGGSRDGRGPAFVAEADESDGSFLAYE 177

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D++ +++A+ +A +     + P 
Sbjct: 178 PLVAV-----------------------VTNVEPDHLDHYGSREAFEDAFVAFVRRVRPG 214

Query: 241 ESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
               +  ADD  +  +++        AG RV++ G   G  + + +         V ++ 
Sbjct: 215 -GVLVACADDEGAARLVETAAADLAAAGVRVVTYGRSAGAEVRVGEQRPADGGWDVDLTT 273

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +         +PG     +A  A     A+GI +      L        RFE  GT   G
Sbjct: 274 DATTVTVHLAVPGTHNALDAAAAWAAVRALGIPAEEAARALGAFRGTGRRFEDRGTAG-G 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGK---------- 404
            R+  DYAH    +  +L+  RT+   GR++V+F          +P +            
Sbjct: 333 VRVVDDYAHHPTEVAALLRAARTVAGDGRVLVLF----------QPHLYSRTRTFAREFG 382

Query: 405 IALDLADIAIVTDDNPRSEDPE 426
            ALDLAD+A+VTD     EDP+
Sbjct: 383 AALDLADVAVVTDVYAAREDPD 404


>gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16]
 gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16]
          Length = 848

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81
           I+ + +DSR +      +F AI   + +G  +IP    +G    VV+S          + 
Sbjct: 41  IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 100

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              T+      L+V NT K L   A +  G     ++ +TG++GK+ V  ++ Q+     
Sbjct: 101 LKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVGITGSNGKTIVKEWLHQL----- 155

Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                + P   I  S  + ++++  P  ++     S L   G+    +  S  G  +   
Sbjct: 156 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 205

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256
           + IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +IY  D    S  V
Sbjct: 206 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 259

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K    A     S+    + +++ +V    +   ++      D  F  P   +  + N+L
Sbjct: 260 GKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDASIENSL 319

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                C+ + + +  + E + +L  V  R E
Sbjct: 320 NCLAACLYLMVPADQITERMARLEPVAMRLE 350


>gi|254431165|ref|ZP_05044868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197625618|gb|EDY38177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 484

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 150/406 (36%), Gaps = 67/406 (16%)

Query: 26  RERKINEVSSDSRHIQAGWIFVA-----------IVGNKEDGHLFI-PQAIA-------- 65
           RE   +    D+  +  GW               + G+ + GHL++ P A++        
Sbjct: 7   RELLFDSSLLDTPSVSGGWWLRPQQRQSYTGVSYLPGDIQPGHLYVQPSALSWGRGYDKD 66

Query: 66  ---------QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--ASRLYGKHP 114
                    +GA A+V+ +        A +     + +  +T   L+    A+R    HP
Sbjct: 67  RESLQRVKQRGARAVVLDA------IPAEVPEGLSVYLAPDTSLALAQLGQAARALASHP 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ VTGT GKS+    +  +  R G          T  S    N        Y    L
Sbjct: 121 --LVCVTGTVGKSTTKRGLAILLARCG---------RTHESQRNFNH-------YHGVTL 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKM 231
           +   +   T  SV   S  L ++ L    + A      T +  DH D + T +A  + K 
Sbjct: 163 TLADTPKDTEFSVLEFSSDLPRYTLPKALIAAPDVAVITEIQYDHTDCYPTLEAIADQKS 222

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQG-KFIHLKKVCAIHNKQ 289
            LF  L P E  A++  D  Y   +   A + G  RVL+ G      + L+      +  
Sbjct: 223 LLFRGLKP-EGTAVLNRDSPYFARMHAAARSYGAARVLTFGCSPLADVALQDCSRQRSGW 281

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           QV      +   +  PLPG   V N+L      +A+G D    L     L  +P      
Sbjct: 282 QVRARCLDQSLTYTLPLPGRHDVRNSLAMLAGVVALGQDPNRCLAAFSALQPLPRHCALE 341

Query: 350 GTNSRGGRI-YVDYAHTSN--SLEMILKNIRTI---TSGRIIVVFG 389
               +GG +  +D + +SN  SL   L+ +      + GR ++V G
Sbjct: 342 HLAVQGGEVRLIDDSFSSNPASLRAALETLALQAEGSPGRRLLVLG 387


>gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
 gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
          Length = 477

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAALLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VVD+  + +         +    I+AVTG+ GK++    
Sbjct: 69  VSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSG 141
           ++ +    G
Sbjct: 125 LRHVLSPLG 133


>gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 464

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/401 (18%), Positives = 161/401 (40%), Gaps = 48/401 (11%)

Query: 8   YKDFPELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           Y  F E++N +S   I   ++   +   VS+D+R I+   IF+A+ G + +G+ +   A 
Sbjct: 3   YMSFDEIVNAVSGQVIISGKYSGYR--NVSTDTRKIEEKDIFIALKGERFNGNKYAAVAS 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA   +V   Y  +   + I   T ++ V +  + L   A     K    ++ +TG++
Sbjct: 61  DKGASICIVDEVYFKK---SEINECTSVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +      + F++  T        +N++  P  I+        +S  V  
Sbjct: 118 GKTTTKDLITSVLS----AKFKVFKTEG----NLNNQIGLPHMIFRLN-----NSYDVAV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  ++ G         +      TN+ R HI    T++    AK+ +  +   K++  
Sbjct: 165 LEMGMNNRGEIHSMAKAARPDIAVITNVLRAHIGNLGTRENILAAKLEI-TDFFSKDNTL 223

Query: 245 IIYAD---------DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +I +D         D ++   +    N+      +  +  FI    +C      +  + +
Sbjct: 224 VINSDNDMLSNLKEDRFNIRRVGLEENSDISAYDIEVKEDFISF-NIC------ENNVKM 276

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E +   F   +PG++ V N+L+A      + +    + E L+ +     R E      +G
Sbjct: 277 EER---FKVNVPGKYNVLNSLLAVACGRILNMTYGEIREGLKNIETTAMRMEIC----KG 329

Query: 356 GRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  V    Y     S++  +  ++   S R + V G  G+
Sbjct: 330 KKFNVINDSYNANPESMKAAIDVLKNFKSKRRVAVLGTMGE 370


>gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
 gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
          Length = 486

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 149/365 (40%), Gaps = 32/365 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +FVA+ G   DGH FI  A A+GA A +        DF        P 
Sbjct: 46  VEMDSRDVRPGDVFVALKGEAMDGHKFIAAAFAKGAVAAITDRPV---DF--------PH 94

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +T K L   A     +     +AVTG+ GK+ V   +     R+   +       +
Sbjct: 95  VLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGVKEAIFASLDRASRGAAH----RS 150

Query: 153 ISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + S+  +N +  P  +    A+A   +   G+ H    A    L  H    + LI    T
Sbjct: 151 VRSY--NNHVGVPLSLARMPARAKFGVFEMGMNHAGEIAP---LSDHVRPHVALI----T 201

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   HI+   + +A  + K ++F  L+   + AII AD  Y+  ++  A   G  V++ 
Sbjct: 202 TIAPAHIENLGSMEAIADEKAQIFTGLVTGGT-AIIPADSEYAGRMIGHAKALGVNVVTF 260

Query: 271 GY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G         L  + +      VT  +      +    PGE  + N+L       A G D
Sbjct: 261 GRSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGVIAAVRAAGGD 320

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSN--SLEMILKNIRTITSGRII 385
            A     L ++  + GR       + GG+ + VD ++ +N  S+   L+ +    + R +
Sbjct: 321 LASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRALGQTPAHRRV 380

Query: 386 VVFGC 390
            V G 
Sbjct: 381 AVLGS 385


>gi|125974689|ref|YP_001038599.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
 gi|125714914|gb|ABN53406.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
          Length = 882

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 23/366 (6%)

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++G TST   F  D  +          A   LSS+ V    +E +  G+ +  L      
Sbjct: 508 KVGMTSTGGIFIGDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLAD 567

Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-- 261
            G  TN+  DH  ID   T +    AK  + E + P    +++ ADD + +  M+RA   
Sbjct: 568 VGVITNIAEDHLGIDGMNTLEDLAFAKSLVVEAVKPG-GYSVLNADDKFVRYFMERAKGE 626

Query: 262 ------NAGCRVLSVGYQ--GKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                 N    V+    Q  GK +++ K    I+N +   + +  K+    +    E  +
Sbjct: 627 IILFSKNNSNPVVKEHMQKGGKALYVDKDSIFIYNGKTAEVLMSVKEIPITYGGMIECNI 686

Query: 313 YNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            N+L AA     + +    + + L      +   PGRF  V       ++ +DY H    
Sbjct: 687 ENSLAAASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMGDF--KVMLDYGHNPAG 744

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427
              ++K +  I + R++ V G  GDRD       G+I     + I I  D + R  +P +
Sbjct: 745 YLEVMKFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGE 804

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +   +   +     K   +E I +    L K   L+ A  G   V    N E+   V   
Sbjct: 805 VAGILYDAVISSGTKKENVEIIYSEDRALEK--ALLDAQPGDFVVMFYENFERAAEVVER 862

Query: 488 IIREIL 493
           + RE+L
Sbjct: 863 VRRELL 868


>gi|256751471|ref|ZP_05492349.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749690|gb|EEU62716.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 819

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 30/298 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK++V      I +  G   + +G T T   +  D  +          A + 
Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID  +T +  A+  A   
Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288
           L  E + ++  +++ ADD  +  + +RA   G  +    Y        H++K   A++ K
Sbjct: 594 LVVEAVKEDGYSVLNADDPMTPYLAQRAK--GKIIYFSMYDNNLTVKKHIEKGGIAVYVK 651

Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             V +   G      K  +    L G+  + V NAL A      + +   ++ + ++  +
Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFY 711

Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
                 PGRF     N    R+ VDY H    ++ +++  + + + R+I V G  GDR
Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDR 767


>gi|91791723|ref|YP_561374.1| UDP-N-acetylmuramate--alanine ligase [Shewanella denitrificans
           OS217]
 gi|123166539|sp|Q12SC5|MURC_SHEDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91713725|gb|ABE53651.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella denitrificans
           OS217]
          Length = 479

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 134/334 (40%), Gaps = 52/334 (15%)

Query: 64  IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
           I+ GA+ I+   A S++       S  I    P ++    R+        + A  +  +H
Sbjct: 62  ISLGAKVIIGHHADSVEHADVVVVSTAINHENPEIIAAKERRIPIVRRAEMLAELMRYRH 121

Query: 114 PENILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ GT GK++  S +  +  Q     +F IG    ++S   + RL T S   +A+
Sbjct: 122 G---VAIAGTHGKTTTTSLIASVYAQAQRDPTFVIG--GLLNSAGTNARLGT-SRYLIAE 175

Query: 173 A----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           A     S+L  Q +  V                        TN+  DH+D +        
Sbjct: 176 ADESDASFLHLQPMVSV-----------------------ITNIEADHMDTYGGDFEKLK 212

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAI-H 286
                F   LP    A++  DD  ++E+M R    G ++++ G+ Q   +       I H
Sbjct: 213 TTFVDFLHNLPFYGVAVMCIDDEINREIMPRV---GRQIVTYGFSQDADVQALNFNQIGH 269

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             Q V    + +D   +  LPGE  V NAL A  +     ID   +++ L +   +  RF
Sbjct: 270 QSQFVVRRKDKEDLALVLNLPGEHNVLNALAAIAVASEDDIDDESIVKALAEFEGIGRRF 329

Query: 347 EFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR 377
           + +G  N+  G++ +  DY H  + +   +K  R
Sbjct: 330 QHLGEFNTANGQVMLVDDYGHHPSEVLATIKAAR 363


>gi|53712185|ref|YP_098177.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis YCH46]
 gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46]
          Length = 848

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81
           I+ + +DSR +      +F AI   + +G  +IP    +G    VV+S          + 
Sbjct: 41  IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 100

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              T+      L+V NT K L   A +  G     ++ +TG++GK+ V  ++ Q+     
Sbjct: 101 LKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVGITGSNGKTIVKEWLHQL----- 155

Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                + P   I  S  + ++++  P  ++     S L   G+    +  S  G  +   
Sbjct: 156 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 205

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256
           + IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +IY  D    S  V
Sbjct: 206 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 259

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K    A     S+    + +++ +V    +   ++      D  F  P   +  + N+L
Sbjct: 260 GKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDASIENSL 319

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                C+ + + +  + E + +L  V  R E
Sbjct: 320 NCLAACLYLMVPADQITERMARLEPVAMRLE 350


>gi|170760804|ref|YP_001785449.1| cyanophycin synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407793|gb|ACA56204.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A3
           str. Loch Maree]
          Length = 873

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 147/360 (40%), Gaps = 53/360 (14%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +S  ++G T+T   +  +  +          A + L+++ V    +E +  GL +  L  
Sbjct: 501 ISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVDVAVLELARGGLIRSGLPY 560

Query: 202 IKLIAGSFTNLGRDH-----IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                G  TN+  DH     ID  +   AY  A   L  E + K+   +I ADD  S  +
Sbjct: 561 DLADVGIITNVTEDHLGLGGIDTLE-DMAYVKA---LVGEAVKKDGYVVINADDEASINI 616

Query: 257 MKRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + R  +                    + L +   G  I+LKK+    NK +  I+V    
Sbjct: 617 INRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN--- 669

Query: 300 FDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSR 354
                 L G+  + V NA+ A    IA+G+D   + + LE        PGRF     N  
Sbjct: 670 -KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMY--NVH 726

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   
Sbjct: 727 GTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIY 786

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464
           + +D  +    +   A+++    G +E G          +  EA++ AIE  N  D++++
Sbjct: 787 IKEDKDKRGRMDGEIADLLK--KGVLETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844


>gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 813

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 39/346 (11%)

Query: 36  DSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPI 92
           DSR I  +   IF A  G ++DGHL+I  A  +G    ++      +D    ++  +  I
Sbjct: 31  DSRKIAHEKLGIFFAFTG-RQDGHLYIQDAYNKGVRNFILE-----KDTEQEVQMPDANI 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V N+   L   A     +    ++ +TG++GK+ V  ++ Q+          + P   
Sbjct: 85  LWVANSWTTLQSLAQHNRSRFQGPVIGITGSNGKTIVKEWLFQL----------MSPEYK 134

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
           I    +    +  S + +A +L  LS+Q    +     SH  +  RL+  IK   G  TN
Sbjct: 135 IYRSPK----SYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKPTFGVLTN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H     ++      K+RLF     K++  +IY   A   E ++  +    R LS G
Sbjct: 191 IGIAHQQGFASKLEKTEEKLRLF-----KDAETLIYP--AKYLEAVQIPYKP--RKLSWG 241

Query: 272 YQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +    +  +V +I   +     VT+   GK F    P      + NA+    + +  G 
Sbjct: 242 EEED--NQLEVYSIRKPEDGQTYVTLYYGGKTFGISVPFTDSAAMENAITCVAVMLRFGY 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           D+AL+ E +  L  V  R E     +    I   Y++   SL++ L
Sbjct: 300 DTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIAL 345


>gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
 gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
          Length = 455

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    P+    + ++ + +DSR IQ G +F A+ G + D H F+   +A GA A+VV
Sbjct: 8   FICQTLGLPVPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           S     +D +A   +    L VD+T   L   A          +  +TG+SGK++V
Sbjct: 68  SR----EDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKTTV 115


>gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
 gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
          Length = 502

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN  DGH ++  AI +GA AI+VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALKGNG-DGHDYVLDAIDKGANAIIVSKHIDIVD-------KN 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            I++VD+  + L   A    G      +A+TG+ GK+S    ++ +   +   S  +
Sbjct: 75  KIILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKTSTKGALKTLLTETSDKSLHL 131


>gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. WH 7803]
 gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 7803]
          Length = 471

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 58/362 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + +  V +DSR ++ G  F+ + G + DGH F+  A+ +GA+A  V+S     D +  + 
Sbjct: 27  KALGPVCTDSRTLEPGSFFIPLRGERFDGHRFLSSAVERGAQAAFVAS-----DCAHAVP 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                  V +T +     A+    +    ++AVTG++GK++    +     RS L+    
Sbjct: 82  DGLLHWKVADTLEAYQQLATLHRRQLNAAVVAVTGSAGKTTTRELI-----RSALA---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206
            P   + +   +N      P+ L  A      +    V VE    G  +  ++ +   A 
Sbjct: 133 -PLGDVQASDSNNNNDIGVPLTLLGA-----HRSHAAVVVEMGMRGAGE--IERLSCCAE 184

Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+G  HI    ++ A  +AK  +   L P+    +I A DA  ++ + R    
Sbjct: 185 PEIAVITNIGTAHIGRLGSRAAIASAKCEITAALSPR-GVVVIPAGDALLEDALSRCWTG 243

Query: 264 GCRVLSVGYQG--------------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
             R+L V  +G                +    +  +   +  +++ +G    F  PL G 
Sbjct: 244 --RILRVSLEGDEPEGGPDVSGLTSAALPAPDLVGVFQPEDQSLAFQG--LRFRCPLEGR 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSR---GGRIYVDYAHT 365
               N ++A    +A+  +  + L  LE + V +PG     G N R   GG   +D  + 
Sbjct: 300 HNARNFMLA----LAVASELEVPLHSLEAMDVAMPG-----GRNKRLSMGGVSLLDETYN 350

Query: 366 SN 367
           ++
Sbjct: 351 AS 352


>gi|60680368|ref|YP_210512.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis NCTC 9343]
 gi|60491802|emb|CAH06560.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis NCTC 9343]
 gi|301161901|emb|CBW21445.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis 638R]
          Length = 840

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81
           I+ + +DSR +      +F AI   + +G  +IP    +G    VV+S          + 
Sbjct: 33  IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 92

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              T+      L+V NT K L   A +  G     ++ +TG++GK+ V  ++ Q+     
Sbjct: 93  LKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVGITGSNGKTIVKEWLHQL----- 147

Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                + P   I  S  + ++++  P  ++     S L   G+    +  S  G  +   
Sbjct: 148 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 197

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256
           + IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +IY  D    S  V
Sbjct: 198 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 251

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K    A     S+    + +++ +V    +   ++      D  F  P   +  + N+L
Sbjct: 252 GKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDASIENSL 311

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                C+ + + +  + E + +L  V  R E
Sbjct: 312 NCLAACLYLMVPADQITERMARLEPVAMRLE 342


>gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 473

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 33/227 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR ++ G IFVA+ G + DGH F+     +GA  ++VS  +     S         
Sbjct: 33  VSIDSRKVEEGGIFVALPGERTDGHRFVDDVFRRGARMVMVSREWYSASGSPLPPPGRGT 92

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +T   L   A+         ++ V G++GK++    +  +      ++ ++     
Sbjct: 93  LVVQDTVSGLQQLAAIYRESFSIPVVGVGGSNGKTTTKEMLGAVLS----TAMRV----H 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTH-------VSVEASSHGLDQHRLDGIK 203
           +S    +N L  P  +   +  + ++    G+ H        S+   SHGL         
Sbjct: 145 MSHANLNNHLGVPLTLLAMRRETEIAVVEMGINHPGEMELLTSIARPSHGL--------- 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 TN+G +H+++         A+  LF  L   E+   I+ ++
Sbjct: 196 -----LTNIGHEHLEFLVNLDGVARAERALFSFL--DETGGTIFVNN 235


>gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
 gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
          Length = 509

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 44/258 (17%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV-------------- 72
           ER    V  DSR +  G +FVA+ G + DGH F  +AI QGA A++              
Sbjct: 25  ERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAEKAIEQGAVAVLAARPVGVPAIIVKP 84

Query: 73  ---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              V+   +  D  A     +   V+           SRL  +   +I+ VTG++GK+S 
Sbjct: 85  QGRVTGDAANADIYANDEDGSAAAVIGALSDLAREVTSRLAAEQGLDIVGVTGSAGKTST 144

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTH 184
              +  I +  G +   + P  +      +N +  P             ++ +S++G+ H
Sbjct: 145 KDLLATIFRAEGET---VAPPGSF-----NNEVGLPYTALRCDEHTRFLVAEMSARGIGH 196

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
           +          +H  +      G   N+G  H+    +++    AK  L  E LP  +  
Sbjct: 197 I----------RHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELI-EALPAAADG 245

Query: 244 --AIIYADDAYSKEVMKR 259
             A++ ADD +   +  R
Sbjct: 246 GVAVLNADDPFVSSMAPR 263


>gi|326771694|ref|ZP_08230979.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505]
 gi|326637827|gb|EGE38728.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505]
          Length = 524

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 125/300 (41%), Gaps = 41/300 (13%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D + T +A+  A +     L+P     +  A DA +  + + A   G RV++
Sbjct: 200 TNVEPDHLDSYGTAEAFETAFVDFAHRLVPG-GLLVACAADAGALRLAQSAAAEGLRVVT 258

Query: 270 VGYQGK------------FIHL--KKVCAIHNKQQVTISVE-GKD-------------FD 301
             + G              +HL  ++  A   +  +T++   G++              +
Sbjct: 259 YSFAGPDTLPGGVLVGEGHVHLDIQERGASSTRGLLTLTTAAGREPAGGAGEEPHHGPVE 318

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            +  +PG+    +A  A    I +G++ AL+   L        RFE  G  + G R+  D
Sbjct: 319 LVLAVPGDHVALDAAGAWAAGIELGVEPALMARALGAFGGTGRRFEDRG-EADGVRVIDD 377

Query: 362 YAHTSNSLEMILKNIRTIT---SGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTD 417
           YAH    +E +L+  R +     GR++V+F      R +      G+ AL LAD  +VTD
Sbjct: 378 YAHHPTEIEALLRTARGVAQERGGRVLVLFQPHLFSRTRAFADRFGQ-ALALADAVVVTD 436

Query: 418 DNPRSED----PEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             P  E     P+     +   +PG   +    R++A     ++    D+L+  G G  T
Sbjct: 437 VYPARETQADFPDITGDTVAQRVPGGTARFVAERLDAAHAVADLARPGDLLLTVGAGDVT 496


>gi|282854262|ref|ZP_06263599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
 gi|282583715|gb|EFB89095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
          Length = 485

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 27/159 (16%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           +R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P LVVD
Sbjct: 32  TRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LPHLVVD 82

Query: 97  NTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152
           + +  LS  A  +     E     +AVTG+SGK+S    + QI     L +F  GPT + 
Sbjct: 83  DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQI-----LETF--GPTVAP 135

Query: 153 ISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186
           + SF  +N +  P     S    +  +S + ++G+ H+S
Sbjct: 136 VGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172


>gi|183220592|ref|YP_001838588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910700|ref|YP_001962255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775376|gb|ABZ93677.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779014|gb|ABZ97312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 463

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 47/247 (19%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTP 165
           +R++ K P  I+ +TGT GKS+  +    + Q+   ++   G      +SF  +N     
Sbjct: 105 ARIFYKGP--IIGITGTDGKSTTTALTYHLLQKKYPNAKMGGNIGVPFTSFCLEN----- 157

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                           + +V +E SS+ LD      +KL A +  NL  DH++ H+T ++
Sbjct: 158 ----------------LDYVVLELSSYQLDDS--PNLKLTASAILNLASDHLERHKTMES 199

Query: 226 YFNAKMRLFEELLPKESPA----IIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLK 280
           Y  AK ++ + L  K+       I ++   + K  +   H+ G      V      IH  
Sbjct: 200 YALAKWKI-QNLEDKDHQCFVNPIFFSYTPFRKPNVSNLHSIGDNETYFVSLHPNLIHTP 258

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           K    H                 FPL G+  + N   A  L    G+D   + + LE   
Sbjct: 259 K----HTYDATR-----------FPLTGKHNLMNLCFAIALAEVAGLDPEQIQKQLETFQ 303

Query: 341 VVPGRFE 347
            +P RF+
Sbjct: 304 GLPHRFQ 310


>gi|254487020|ref|ZP_05100225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
 gi|214043889|gb|EEB84527.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
          Length = 478

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 21/288 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +QAG +FVA+  +  DG  F+  A+ +GA A +VS           +  + 
Sbjct: 24  DGVSIDTRTLQAGDLFVAL-KDVRDGQDFVATALEKGAGAALVSR------VPDGVADDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+  K L    +    +    ++AVTG+ GK+S    +  I    G +       
Sbjct: 77  PLLIVDDVLKGLEALGAAARARTSAKVVAVTGSVGKTSTKEMLLAIFADQGRAH------ 130

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +++ S+  +N      P+ LA+ +   +   V  + +           L   K  A   T
Sbjct: 131 ASVDSY--NNHWGV--PLTLAR-MPVDTDYAVIEIGMNHPGEISPLAIL--TKPDAAMVT 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++           K  +F+ L P    A+I AD  ++  +M +A +   R +  
Sbjct: 184 TVAAVHLEAFDDVAGIALEKAAIFDGLEPG-GVAVINADIDHAAILMAKAVDRRLRDIEF 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           G       LK V    +   V    +G    F    PG     NAL A
Sbjct: 243 GENAYHFKLKDVQVQGDVTVVQADADGTPLLFKIGTPGRHFAMNALGA 290


>gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 461

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 146/372 (39%), Gaps = 54/372 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N++  DSR+I  G +F+ + G + DGH FI  A   GA A           FS    S 
Sbjct: 26  LNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVAT----------FSERAISG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GL 142
            P ++V+N        A     K   +++AVTG++GK+S    ++ +  ++       G 
Sbjct: 75  RPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKAYKTYKTQGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  IG   T+    +D        I L     ++    +  +S  A  H          
Sbjct: 135 YNNDIGLPYTVLHMPEDTE-----KIVLEMGQDHMGD--IQLLSRIARPH---------- 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  T +G  H+ Y  +++     KM++ + +   +S  I+ A       ++     
Sbjct: 178 ---IAVLTLIGEAHLAYFGSREKIAEGKMQIVDGM---DSNGILIAP---GDPILDPYLP 228

Query: 263 AGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V+  G +Q   +   K C    K  +T            PL G++   NA++AA +
Sbjct: 229 DSQMVIRFGDHQELVVEDIKEC----KDSLTFRTNVLPRPVTIPLTGKYNATNAMIAAYV 284

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
              + +    ++E LE + +   R E++   + G  +  D Y     ++ +IL+    I 
Sbjct: 285 GKLLAVPDEDIIEALEAVKLTRHRTEWLKA-ANGADLLADVYNANPTAMRLILETFAAIP 343

Query: 381 S---GRIIVVFG 389
           +   G+ I V  
Sbjct: 344 ANPNGKKIAVLA 355


>gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276]
 gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276s]
          Length = 450

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80

Query: 88  SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
               +L V + R+ L   A R      YG+    ++ +TG+ GK++  +F  Q+   S +
Sbjct: 81  ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNFANQLL--SSV 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               + P S       +++LT P  + +A
Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152


>gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 450

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80

Query: 88  SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
               +L V + R+ L   A R      YG+    ++ +TG+ GK++  +F  Q+   S +
Sbjct: 81  ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNFANQLL--SSV 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               + P S       +++LT P  + +A
Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152


>gi|104783452|ref|YP_609950.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas entomophila
           L48]
 gi|122401968|sp|Q1I5B9|MURC_PSEE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|95112439|emb|CAK17166.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas entomophila L48]
          Length = 482

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 168/429 (39%), Gaps = 68/429 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 73  AASADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125

Query: 125 GKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  
Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
           Q +  V     +        D +    G F  L +  +++      Y  A M L      
Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234

Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+LP+ + P + Y    +S+E   RA N    V   G Q  F  L++ C     + + +S
Sbjct: 235 EILPQVKRPTVTYG---FSEEADIRAIN----VRQQGMQTHFTVLRRDC-----EPLEVS 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353
           V          +PG   V NAL    +    GI    +++ L     V  RF+  G    
Sbjct: 283 VN---------MPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQGVGRRFQVYGELPV 333

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            GG + +  DY H    +  ++K +R    S R+++V+     R    R +       L 
Sbjct: 334 EGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQP--HRYSRTRDLYDDFVQVLG 391

Query: 411 D--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           D  + ++ +  P  E+  P     ++ H I       P +IE+G  +  +     +L   
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPL--VKPLLRAG 449

Query: 460 DVLVVAGKG 468
           D+L+  G G
Sbjct: 450 DILICQGAG 458


>gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
          Length = 450

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80

Query: 88  SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
               +L V + R+ L   A R      YG+    ++ +TG+ GK++  +F  Q+   S +
Sbjct: 81  ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNFANQLL--SSV 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               + P S       +++LT P  + +A
Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152


>gi|323706228|ref|ZP_08117795.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534392|gb|EGB24176.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 465

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 40/297 (13%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRL--FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           N+  DH+DY +      N K     F  L+P +   +   DD  +  V+K   N    ++
Sbjct: 184 NVDSDHLDYFKNID---NIKQSFTQFANLVPNDGFVVACGDDPNTMSVLK---NVNRNII 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFD----------FLFPLPGEFQVYNALV 317
           + G       L   C   N + +    +G   FD          F   + G+  + NAL 
Sbjct: 238 TFG-------LDSNCT-WNAKNIKFDEKGFPSFDVYHNGTFVERFELSIVGKHNILNALA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              +C  +G+D     + ++K      RFEF GT   G  I  DYAH    ++  L +  
Sbjct: 290 TLSVCHLLGVDIKKTPDIIKKFKGTHRRFEFKGT-IDGAVIIDDYAHHPTEIKATLSSAL 348

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGI 436
                RII VF                 + D ADI I+TD    R +D   +RAE +  +
Sbjct: 349 NYPHNRIICVFQPHTYTRTYSLLNDFAASFDDADITIITDIYAAREKDTGIVRAEDLANL 408

Query: 437 PGFIEKGNRIEAIRTAIEMLN-------KQDVLVVAGKG--HETVHIVTNGEKKMSV 484
               ++GN +  I+   ++++         D+++  G G  +E  +++ N  KK ++
Sbjct: 409 --IKDRGNEVYYIKEFSDIVDYLKGTIKNGDLVITIGAGDVYEIGNMLLNFNKKAAI 463


>gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
 gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
          Length = 457

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 141/345 (40%), Gaps = 39/345 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS DSR I  G +FV   G   DGH F+  AI +GA A     A+  +D       +
Sbjct: 27  IQGVSIDSRKIGRGNLFVPFKGENSDGHRFVEDAIEKGAAA-----AFWQKDVPNP-PLH 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            PIL+V++T   L   A     +    +  +TG++GK++           + L S Q   
Sbjct: 81  LPILIVEDTLTALQELARSYRDELKIKVAGITGSNGKTTTKDMT------ANLLSLQYKV 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGS 208
             T  ++  +N +  P        L+ L+ +  T ++V E    G  +  +D +  +A  
Sbjct: 135 QKTEGNY--NNHIGLP--------LTILALEEDTEIAVLEMGMSG--RGEIDFLTKLARP 182

Query: 209 ----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H+    +++    AK+ +   L  +E+  +IY  D    +   +++N  
Sbjct: 183 DAVIITNIGESHLQDLGSREGIAEAKLEIVNGL--QENGLVIYYGDEPLLDEKLKSYNGS 240

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGL 321
             + + G  GK      V  +  KQ  + S  G +     F  P+ G   V NAL A   
Sbjct: 241 AALRTFGRTGK----NDVYPMDIKQNDSGSTFGINVSSGKFYLPVLGTHNVLNALAAMIA 296

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
               G+    + E    L +   R E +   S G +I  D  + S
Sbjct: 297 AAHFGVPYEKMNEGFASLKLTNMRMELLEGQS-GEKIINDAYNAS 340


>gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 448

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 47/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S +S++I+   +F+ + G++ DGH FI +A+  GA + +     S +DF       
Sbjct: 25  VKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAISFI-----SQKDFDDL---K 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P + V++T   L+L +   Y +   N   ++ VTG+ GK+S   ++  +       S +
Sbjct: 77  VPYVKVEDT--LLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEYIFNVL------SLR 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205
                   +F  +N +  P  I     L+      V    +  S+ G +  +L  I K  
Sbjct: 129 YKAFKNQGNF--NNHIGLPISI-----LNMPEDTQVAVFEMGMSNFG-EISKLSQIAKPD 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHN 262
            G  TN+G  HI+  +++   F AK  + ++ +P+    II  D+      K+ +KR   
Sbjct: 181 IGVITNIGIAHIENLKSRYNIFLAKSEI-QDGMPESGILIINNDNDILNLHKKELKR--- 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +V+++G + +     +    H   Q   S E   + +         +YN+L A  + 
Sbjct: 237 ---KVVTIGIENESNFRAQNVQRH---QNGFSFEVGGYTYFIESFNFHDIYNSLFAIAVG 290

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +G+D  L+ E + +   +  RFE +    +G    VD  + +++  M L  I +I   
Sbjct: 291 TILGVDRELIKEAIRQKERLKRRFEVI---KKGSITIVDDTYNASTHSM-LSAIDSICEF 346

Query: 382 -GRIIVVFG 389
            G+ I+V G
Sbjct: 347 DGKKILVLG 355


>gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
 gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
          Length = 452

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 16/140 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ V  DSR +    ++V I+G + DGH F  Q I  GA         SL        
Sbjct: 25  KKIHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQTIEDGA-------LISLWQKDHVPY 77

Query: 88  SNTPILVVDNT-RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------ 140
            + P+++VD+T R    L  + L   HP  ++ VTG++GK+S    +  I  +       
Sbjct: 78  PDFPVILVDDTLRAMQDLSKAYLDELHPL-VIGVTGSNGKTSCKDMLYSIFSQEKKTQKT 136

Query: 141 -GLSSFQIGPTSTISSFAQD 159
            G  + +IG   TI  F +D
Sbjct: 137 QGNRNSEIGLPLTIFDFDED 156


>gi|148657887|ref|YP_001278092.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus sp. RS-1]
 gi|189029029|sp|A5UZT9|MURC_ROSS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148569997|gb|ABQ92142.1| UDP-N-acetylmuramate--L-alanine ligase [Roseiflexus sp. RS-1]
          Length = 468

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 158/442 (35%), Gaps = 68/442 (15%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DGH   P  IA GA+A+V +SA         +R +   L     R    L  + L+ +  
Sbjct: 50  DGH--DPAWIA-GADALVATSA---------VRDDHVELSAARARGIPVLRRADLWREWS 97

Query: 115 EN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +   ++AV GT GK++  + +   + Q  G   F IG            R   P+   + 
Sbjct: 98  QQRRVVAVAGTHGKTTTTALIALMLTQAGGNPGFLIG--GETPDLGIHARWGDPAAPLVV 155

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y                  D+  L     +A   TN+  DH+D + +   Y  A  
Sbjct: 156 EADEY------------------DRTFLALTPDVA-VMTNVEWDHVDIYPSPDNY-EAAF 195

Query: 232 RLFEELLPKESPAIIYADDA-------------YSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           RLF   + +    I+  DD              Y  E     + A CR+  + +    + 
Sbjct: 196 RLFTRRVAQPQRLIVCGDDPGALRVANHPDAQQYGIEEAIARNPASCRLAPMDWMAANVR 255

Query: 279 LKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                   +  +      G   D  +   L G+  V NAL A  +   +G++   + + L
Sbjct: 256 YDGAMTNFDLWRYDRRTFGARLDGTYTMRLVGDHNVRNALAAIAVATLLGVERDAIADAL 315

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF--GCGGDR 394
                   RF+  G  + G  I  DYAH        L   R     R +VV+       R
Sbjct: 316 AAYRGARRRFDIKG-EANGITIIDDYAHHPTEARATLAAARARFPQRRLVVYLQPHTFSR 374

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIPGFIEK------GNRI 446
            Q  R      A D AD+  + D  P  E  DP      + H + G I        GN +
Sbjct: 375 TQALRDAWAD-AFDHADVVRIGDVYPARETGDPRT----VAHALAGCIRHNDVQAVGNVV 429

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
           EA  T   +L   DVL+  G G
Sbjct: 430 EAAATIGGLLRPGDVLLTLGAG 451


>gi|160880607|ref|YP_001559575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
 gi|189082875|sp|A9KLU2|MURD_CLOPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160429273|gb|ABX42836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
          Length = 454

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 121/282 (42%), Gaps = 35/282 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I A+TGT+GK+S  + V +I +    S F +G       + Q  + T    + +A     
Sbjct: 111 IAAITGTNGKTSTTTLVGEIMKTYYKSVFVVGNIGV--PYTQMVKNTENDSVTVA----- 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                      E SS  L+   ++  +    +  N+  DH++ H T +AY  AK+ + + 
Sbjct: 164 -----------EMSSFQLET--IETFRPDVSAILNITPDHLNRHHTMEAYIEAKVNITKN 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTIS 294
              KE   I+  +D+Y + V  R         SV    +G F+    +    ++++  + 
Sbjct: 211 -QTKEDTCILNYEDSYLRTVSGRIPATILWFSSVRELERGLFLRENHIIYRDDEKECVVC 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D + L  + G+    N + A G+ IA+ +    + E + K   V  R E+V T  R
Sbjct: 270 ----DVNEL-QIIGKHNYENVMAAVGIAIALKVPMDFIREAVTKFRGVEHRIEYV-TTKR 323

Query: 355 GGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDRD 395
           G + Y D   T+    +  +K ++T T     ++ G G D+D
Sbjct: 324 GVKYYNDSKGTNPDASIQAIKAMQTKT-----LLIGGGYDKD 360


>gi|313899199|ref|ZP_07832719.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
 gi|312956022|gb|EFR37670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
          Length = 437

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 41/272 (15%)

Query: 119 AVTGTSGKSSVASFVQQICQ--RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALS 175
           AVTGT+GK+++ + + ++ +     + +  IG P S ++   +D          +A  LS
Sbjct: 107 AVTGTNGKTTITTMLYEMLKYNHKAIVAGNIGWPLSELALAYEDEEKD------VALELS 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G+ H +   S                    NL  DH+DY  + ++Y+ +KMR++E
Sbjct: 161 NFQLLGIEHFAPHVSV-----------------VCNLAPDHLDYMPSVESYYESKMRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++   +   DDA    VM+ A +  C+V+      + + L +        ++ +  
Sbjct: 204 N-CTEDDWFLRNVDDA---TVMQYAQHIPCKVIDFSLTRQDVDLYRKDGTVYLHELAL-F 258

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E K+F  +    G++ + NA++A+ +   +G+  + + + +     V  R E++G  + G
Sbjct: 259 EEKNFHVV----GDYNLSNAMIASCMAYKLGVSVSDIQKAIAAFSPVEHRLEYIGEKN-G 313

Query: 356 GRIYVDYAHTSN-----SLEMILKNIRTITSG 382
            + Y D   T+      +L    KNI  +  G
Sbjct: 314 VKFYNDSKATNTHAVAAALNSFDKNIILLAGG 345


>gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 448

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 47/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S +S++I+   +F+ + G++ DGH FI +A+  GA + +     S +DF       
Sbjct: 25  VKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAISFI-----SQKDFDDL---K 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P + V++T   L+L +   Y +   N   ++ VTG+ GK+S   ++  +       S +
Sbjct: 77  VPYVKVEDT--LLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEYIFNVL------SLR 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205
                   +F  +N +  P  I     L+      V    +  S+ G +  +L  I K  
Sbjct: 129 YKAFKNQGNF--NNHIGLPISI-----LNMPEDTQVAVFEMGMSNFG-EISKLSQIAKPD 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHN 262
            G  TN+G  HI+  +++   F AK  + ++ +P+    II  D+      K+ +KR   
Sbjct: 181 IGVITNIGIAHIENLKSRYNIFLAKSEI-QDGMPESGILIINNDNDILNLHKKELKR--- 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +V+++G + +     +    H   Q   S E   + +         +YN+L A  + 
Sbjct: 237 ---KVVTIGIENESNFRAQNVQRH---QNGFSFEVGGYTYFIESFNFHDIYNSLFAIAVG 290

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +G+D  L+ E + +   +  RFE +    +G    VD  + +++  M L  I +I   
Sbjct: 291 TILGVDRELIKEAIRQKERLKRRFEVI---KKGSITIVDDTYNASTHSM-LSAIDSICEF 346

Query: 382 -GRIIVVFG 389
            G+ I+V G
Sbjct: 347 DGKKILVLG 355


>gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 459

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+DSR      +F A+ G   D H ++ +A  QG  A VV               N
Sbjct: 25  VENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHP---------TEGN 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              L+V ++R  L   A  L  K    ++A+TG+SGK++V   V  I Q+S + S
Sbjct: 76  IARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDS 130


>gi|159028776|emb|CAO89947.1| cphA [Microcystis aeruginosa PCC 7806]
          Length = 877

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 26/321 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ILA+TGT+GK++ +  +  IC+++G     +G T+T   +  D  +          A   
Sbjct: 490 ILAITGTNGKTTTSRLISHICRQTGKV---VGFTTTDGVYIDDYLVEKGDNTGPYSASMI 546

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235
           L    V    +E +  G+ +  L   +   G   N+  DH+           AK++ +  
Sbjct: 547 LKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVVA 606

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKK--VCAIHNKQQV 291
           E++  E  A++ ADD  +  + ++         S+      I  H+++  + AI+    +
Sbjct: 607 EVVSAEGYAVLNADDPLTASMAEKVKGR-VAYFSMSPDNPIIHDHIRRGGMAAIYENGYL 665

Query: 292 TISVEGK---DFDFLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341
           +I +EG+     +    +P        F + NAL A       GID  L+ + +      
Sbjct: 666 SI-LEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFKPS 724

Query: 342 ---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGR              +DYAH     E +   +    SG  + V G  GDR    
Sbjct: 725 VAQTPGRMNLFDLGHH--HALIDYAHNPAGYEAVGGFVGN-WSGEKVGVVGGPGDRRDDD 781

Query: 399 RPIMGKIALDLADIAIVTDDN 419
             ++GK++  + D  IV +DN
Sbjct: 782 LILLGKLSAQMFDRIIVKEDN 802


>gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
 gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
          Length = 463

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 7/113 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++N +S D+R I+ G +FVA+   + DGH F+ QA+ +GA A +VS           +  
Sbjct: 22  QVNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQALEKGAGAALVSH------IPEGVAE 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           + P+L+V++ +  L         +    ++AVTG+ GK+S    +  +    G
Sbjct: 75  DAPLLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLTPQG 127


>gi|254520514|ref|ZP_05132570.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
 gi|226914263|gb|EEH99464.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 132/341 (38%), Gaps = 50/341 (14%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHP 114
           ++GAE  +     +L+D     ++A I S+ P  +++   K + L     F   +   H 
Sbjct: 53  SEGAEIYIGHDKGNLKDVDLVVYTAAIPSDNP-EIIEAKDKNIDLMDRAEFLGLIMKGHK 111

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLA 171
            N+ A++GT GK++  S +  +  ++ L      PT  +         N     S  ++ 
Sbjct: 112 YNV-AISGTHGKTTCTSMLSHVTLKADLD-----PTILVGGELDVIDGNFKIGNSEYFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S    +  +                   G   N+  DH+DY++    +     
Sbjct: 166 EACEYKESFLKFYPYI-------------------GVILNIDADHLDYYRDLN-HIKETF 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F  ++P +   I Y +D    E++ +A    C  +S G     +    + +  NK + 
Sbjct: 206 EKFSNIIPSDGYLIGYCEDENVNEILNKAK---CNTISYGINKGDVRATNI-SFDNKGRA 261

Query: 292 TISVEGKDFDFLFPLP----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +V  KD D LF +     G+  + NAL    + +   I    ++E L +      RFE
Sbjct: 262 SFTV-CKDNDELFDVTLNTTGKHNILNALSTICVGLIFNIPYTSIIEGLRECKGAHKRFE 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           + G    G  I  DYAH    ++  L     I    I  VF
Sbjct: 321 YKG-EFNGATIIDDYAHHPVEIKATLDTATIIPHKNIYAVF 360


>gi|150389045|ref|YP_001319094.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149948907|gb|ABR47435.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 887

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 43/379 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I +VTGT+GK++    + +I +++GL    +G TST   + QD  +          A S 
Sbjct: 482 IFSVTGTNGKTTTTRMLAKILRQNGLV---VGMTSTGGIYVQDELICGGDATGPRSAESI 538

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234
           L    V    +E +  GL    L       G  TN+G DH+  D   T +   + K  + 
Sbjct: 539 LLDNRVEVAVLETARGGLINKGLAYDLADIGIITNIGNDHLGMDGVNTLEEMADVKALVT 598

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--------AIH 286
           E + P +  AI+ A+D + + + +R     C++L   Y  K ++ K +         A++
Sbjct: 599 EAIRP-QGYAILNAEDKFVERIAQRIT---CQIL---YFAKDMNNKVIKDHVNRGEKAVY 651

Query: 287 NKQQVTISVEG---KDFDFLFPLPGEF------QVYNALVAAGLCIAIGIDSALVLEHLE 337
            K  +    +G   K    +  +P  +       + N+L A       GI + ++ + L 
Sbjct: 652 IKDDIIQVFDGEKEKPVIHVENIPATYGGVLIHNIENSLAAVAAAFGHGIKTDVIAKGLS 711

Query: 338 KLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           +        PGRF          R+ +DY H  +  + +L+ ++ +   R+I V G  GD
Sbjct: 712 QFQTDASTNPGRFNIFEMEK--CRVVIDYGHNIDGYQKVLEGLKLMKKNRLIGVIGVPGD 769

Query: 394 RDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIE--- 447
           R       +G+I+    D + I  D + R  +P ++   +  G  + G  E+  +IE   
Sbjct: 770 RTDISTLKIGEISGKHFDHVYIKEDKDLRGRNPGEVANLMKKGCALGGLKEEEIQIEHCE 829

Query: 448 --AIRTAIEMLNKQDVLVV 464
             A++ A+E   + D+++V
Sbjct: 830 IKALQKALESAQQGDIIIV 848


>gi|168181017|ref|ZP_02615681.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
 gi|182668137|gb|EDT80116.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
          Length = 458

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 53/323 (16%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           ++A I S+ P  +++   K + L     F   L   +  NI A++GT GK++  S +  +
Sbjct: 75  YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNI-AISGTHGKTTTTSMLSHV 132

Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             ++      + PT  +         N     S  ++ +A  Y SS              
Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174

Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                   +K     G+  N+  DH+DY++      NA  + F +L+PK+   + Y +D 
Sbjct: 175 --------LKFFPYIGAILNIDADHLDYYRDLNDIKNAFSK-FIKLIPKDGYLVAYGEDK 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFP 305
             + ++K A+   C V++ G     I        +K C   +     +    K F     
Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  + N+L +  + +A  +    ++E +E       RFE  G  +    I  DYAH 
Sbjct: 279 VPGKHNILNSLASICIGLASNMKCKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHH 337

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
              +   L   +     ++  VF
Sbjct: 338 PTEISATLDAAKKYPHNKLFCVF 360


>gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 456

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 163/400 (40%), Gaps = 41/400 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +IN +S+DSR +Q+G +FV + G   DGH ++ QA+  GA A +                
Sbjct: 24  EINGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQAVEHGAAACLSEEVVG--------GL 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++ V++T + L   A  +       +LAVTGT+GK+S    +  I  +         
Sbjct: 76  PVPVIQVEDTLQALGELARTIRSGFDGPVLAVTGTTGKTSTKEMLASILAQG-------- 127

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAG 207
            +  + +    N L     I L   L+ LS +    V  +  S HG  +   +  +    
Sbjct: 128 -SDGLKTEGNFNNL-----IGLPLTLARLSDEHRWMVLELGMSQHGEIERLTEIAQPDVA 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H+      +    AK  LF   L   + A++  DDA    +       G RV
Sbjct: 182 LITNVGAGHLAGVGNIEGVARAKGELFSG-LKAGATAVVNRDDAL---IAALPIPDGVRV 237

Query: 268 L--SVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +  S+ YQ +     +  +I + QQ   T+ V         PLPG  QVYNAL AA    
Sbjct: 238 IDFSLTYQTQV----RATSIDSGQQASFTLHVGESQVRVELPLPGRHQVYNALAAAAAAH 293

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TS 381
           A+G     +   L  + +  GR E V T   G  +  D Y     S++  L  +      
Sbjct: 294 AVGCSLEQIATGLGCVKMAAGRLE-VRTLPHGATVLDDSYNANPQSMQAALSVLSDWPCQ 352

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           G  I V G     GD  Q     +G++A   A+  +   D
Sbjct: 353 GTKIAVLGDMLELGDVSQACHEELGRLAAQRAEQVLCYGD 392


>gi|254419559|ref|ZP_05033283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
 gi|196185736|gb|EDX80712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
          Length = 467

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 104/264 (39%), Gaps = 32/264 (12%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           + VV +   F     +   G+ P  ++A+TGT+GKS+  + +  + Q++GL+   +G   
Sbjct: 94  VPVVGDIELFARALDALPEGRRPW-VIAITGTNGKSTTTALIGWVLQQAGLT-VHVGGNI 151

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            I   A    L  P+P             G  +V +E SS+ LD     G    A   TN
Sbjct: 152 GIGVLA----LPEPTP-------------GAVYV-IEVSSYQLDL--TTGFAPDAAILTN 191

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  DH+D H   + Y  AK R+F+    +++   +  DD Y   + +     G  V  V 
Sbjct: 192 ISPDHLDRHGGMEGYVAAKRRIFQS---RKTAPYVGIDDPYGFAIWQELKAEGRAVDPVS 248

Query: 272 YQGKF-----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +        ++L      +N       +   D      LPG     NA  A      +G
Sbjct: 249 VERPMDDDLGMYLMDDWLTYNAGGRPAPI--VDLSKARSLPGRHNAQNAAFAFLAVNDMG 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVG 350
           I    V++ L     +  R E VG
Sbjct: 307 IPEETVVKGLLTFPGLAHRMEAVG 330


>gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 515

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 118/300 (39%), Gaps = 33/300 (11%)

Query: 27  ERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS---LQD 81
           E +IN  ++ +DSR +Q G ++VA  G   DGH FI  AI  GA  I+     +    Q 
Sbjct: 24  ELRINVAQICTDSREVQPGSVYVAKPGEHSDGHTFIEAAIEAGAILIIAEREIADAQGQP 83

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           F A I ++    + D   + + L   R  G+    +L +TG++GK++    +  I +   
Sbjct: 84  FPAIIVADAVQAMGDIAAEVVQLI--RANGE--VTVLGITGSAGKTTTKDLLAGILR--- 136

Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHR 198
               Q+GPT + I S+  +  +  P  ++ A   +   +   G T +       GL    
Sbjct: 137 ----QLGPTVAPIGSY--NGEVGVPLTVFQADLTTRFLVIEMGATRIGHIEYLAGL---- 186

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +K   G    +G  H       +    AK  L E L P  +  +   D      V  
Sbjct: 187 ---VKPDIGVVLGIGSAHAGEFGGVENIAQAKGELVEALSPTGTAVLNLGD----GRVSA 239

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A      VL  G +G  I   +   +    QV  S     FD  FP    + + + L+ 
Sbjct: 240 MASRTVAPVLWFGEEGLRIPEGQTSVLAGNVQVG-SNATPSFDLRFPDGSSWPIRSGLIG 298


>gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 423

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 39/363 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R      +F  + G + +G+ F+P AI +GA  +V +     + +S   ++    
Sbjct: 14  VATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTND----KKWSYLPQA---- 65

Query: 93  LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ++V++T K L   A  LY +H     I+A+TG++GK++    +  +  +S          
Sbjct: 66  ILVEDTLKTLQELA--LYHRHYLATPIIALTGSNGKTTTKELIYSVLNQS------FRTL 117

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T  +F  +N L  P  +     L       +  V + A+  G         +   G  T
Sbjct: 118 KTEGNF--NNHLGVPLTL-----LRLTPETDIAIVEMGANHPGEIAQLCRIAEPDFGYIT 170

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N GR H++   + +    AK  L+   L K++  I +  D    E+  R  N      S 
Sbjct: 171 NFGRAHLEGFGSFEGVIQAKSELY-NYLKKDNKRIFFCQD---NEIQVRLLNGYSNTYSF 226

Query: 271 GYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA--IGI 327
             +G K  +L+       K+ + + +  ++ +    L G++   N  VAA +CI     +
Sbjct: 227 SMEGNKKANLQLSLY---KESLLVKLHWEESNIQTHLIGKYNAMN--VAAAICIGNYFKL 281

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
               ++  +E       R +FV   + G +I +D Y    +S+   ++  + I S   I+
Sbjct: 282 TKEAIIHGIEGYIPTNNRSQFV-EKAHGNKILMDAYNANPSSMHAAIEAFKEIPSANKIL 340

Query: 387 VFG 389
           + G
Sbjct: 341 ILG 343


>gi|302561123|ref|ZP_07313465.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
 gi|302478741|gb|EFL41834.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
          Length = 470

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 40/218 (18%)

Query: 62  QAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +  G E IV +  +      F+A  R+  P+             A RL G      LA
Sbjct: 63  ETLPDGTELIVTAPGWRPDKPLFAAADRAGVPVW-------GDVELAWRLRGPDAAPWLA 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++    +  I + +GL +  +G                   + L  A+  L  
Sbjct: 116 VTGTNGKTTTVQMLASILEAAGLRTAAVGNIG----------------VSLLDAV--LGE 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E    
Sbjct: 158 ERYDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYARDKGRVYE---- 211

Query: 240 KESPAIIYADDAYSK----EVMKRAH-NAGCRVLSVGY 272
               A +Y  DA  K    ++++ A    GCR  +VG+
Sbjct: 212 GNRVACVYNADATGKPSTEDLVREADVEEGCR--AVGF 247


>gi|226951004|ref|YP_002806095.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
 gi|254765991|sp|C1FNF4|MURC_CLOBJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226844146|gb|ACO86812.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 458

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 53/323 (16%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           ++A I S+ P  +++   K + L     F   L   +  NI A++GT GK++  S +  +
Sbjct: 75  YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNI-AISGTHGKTTTTSMLSHV 132

Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             ++      + PT  +         N     S  ++ +A  Y SS              
Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174

Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                   +K     G+  N+  DH+DY++      NA  + F +L+PK+   + Y +D 
Sbjct: 175 --------LKFFPYIGAILNIDADHLDYYRDLNDIKNAFSK-FIKLIPKDGYLVAYGEDK 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFP 305
             + ++K A+   C V++ G     I        +K C   +     +    K F     
Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  + N+L +  + +A  +    ++E +E       RFE  G  +    I  DYAH 
Sbjct: 279 VPGKHNILNSLASICIGLASNMKCKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHH 337

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
              +   L   +     ++  VF
Sbjct: 338 PTEISATLDAAKKYPHNKLFCVF 360


>gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 518

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 146/372 (39%), Gaps = 47/372 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R +  G +FVA+ G + D H F+ QA A GA   VV +  +L      I  + P+
Sbjct: 81  ISTDTRSLPPGCLFVALQGERFDAHDFLAQAHAGGAGGAVVRAGQALP----AIPGDFPL 136

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V +T   L   A     +    + AV G++GK++    V  I    G           
Sbjct: 137 YEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRG----------- 185

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
             +   +  L     + L   L  L    V  V     +   +  RL   I+  AG  T 
Sbjct: 186 -PALKTEGNLNNEVGVPL--TLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITV 242

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----------SKEVMKRAH 261
           +  +H++   + +    A+  LF EL P E+ A++  DD             +    RA 
Sbjct: 243 VQPEHLEGLGSLEGVAEAEGELFRELSP-EAVAVVNLDDPLIPAQAAKGRGKRLTFGRAE 301

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +A  R+  V  +G+               +T+  +G+D+       GE    NA  A  L
Sbjct: 302 SADVRLSQVETRGR-----------EGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFAL 350

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379
            +A+G      +  LE       R   V  +   G   VD  + +N  S++  L  +RT+
Sbjct: 351 ALALGYSPEECVRGLESARPYARRLNVV--DGLHGVTVVDDCYNANPASMDAALDTLRTL 408

Query: 380 TS--GRIIVVFG 389
            +  GR + V G
Sbjct: 409 VTAGGRAVAVLG 420


>gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Riemerella anatipestifer RA-YM]
 gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 424

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 130/330 (39%), Gaps = 46/330 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K N+VS DSR I  G +F A  G   +       AI +GA A++V      Q     I  
Sbjct: 12  KSNKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVE-----QKEYENISK 66

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           N  I  V +T KFL   +     K    I+A+TG++GK++    +  +  +     F  G
Sbjct: 67  N--IFYVPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKG 124

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLI 205
                     +N +  P        L+ LS +    ++V    ++H  +  RL  I +  
Sbjct: 125 NL--------NNHIGVP--------LTLLSIKPEHEIAVVEMGANHQKEIERLCQIAQPD 168

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN G+ H++     +     K  L++ L  +    ++ A+D    E  K      C
Sbjct: 169 YGYVTNFGKAHLEGFGGVEGVIKGKSELYDYLKKENKQILVNANDTIQVEKTKDYSKIIC 228

Query: 266 -RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              L   Y  +          ++ Q+V +  EG+  + +  L G +   N   A  L + 
Sbjct: 229 FGTLQSDYDFQL--------FYDNQRVGLIFEGE--EMISQLTGAYNFTNISAAVTLGLH 278

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GID  L+ E ++         E+  TN R
Sbjct: 279 FGIDKNLIKEAIQ---------EYTPTNMR 299


>gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
 gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
          Length = 471

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 35/248 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR +  G +FVA  G + DGH F    +  GA A++ S    +           P 
Sbjct: 31  VVRDSREVVPGSLFVAFAGERVDGHDFAAAVVEAGAAAVLASRPVGV-----------PA 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VV + +  L   A  +  K    ++A+TG++GK+S    V Q+ +R   + F  G    
Sbjct: 80  IVVPDVQAALGALARHVVRKLGTTLVALTGSAGKTSTKDLVAQVLRRKAPTVFTPG---- 135

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR-LDGIKLIA-GSF 209
               + +N +  P        L+ LS+   T   V E  + G+   R L G+     G  
Sbjct: 136 ----SLNNEIGLP--------LTALSATEETRFLVLEMGARGIGHIRYLTGLTPPKIGLV 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKRAHNAGCRV 267
            N+G  HI     ++    AK  L E L   E    AI+ ADD   + +  R      RV
Sbjct: 184 LNVGTAHIGEFGGREQIAQAKGELVEALPSAEEGGAAILNADDPLVRAMASRTK---ARV 240

Query: 268 LSVGYQGK 275
           +  G  G+
Sbjct: 241 ILFGESGE 248


>gi|289549042|ref|YP_003474030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
 gi|289182659|gb|ADC89903.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
          Length = 422

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 53/286 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT GKS+       I +            S  S   +   +  P         SYL
Sbjct: 87  IAITGTDGKSTTTRLSYLILR------------SYFSHVEEGGNIGVP--------FSYL 126

Query: 178 SSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             +    ++V E SS       L   +   G+F N   DH+D+H   + Y  +K  +F  
Sbjct: 127 VMKNPKALAVLEVSS--FQGKTLKTFRPHVGAFLNFSEDHLDWHPDLRDYLWSKYNIFSR 184

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             P E   ++      +++    A       GC            H+K+  A  +++++ 
Sbjct: 185 QTP-EDWILLNGTQKVTRDTPSPARKVFFGDGCEA----------HVKEDGAYWSEEKL- 232

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            SVE         L G+  +YNALVA  +   +G+ +  + E L     +P R E VG +
Sbjct: 233 FSVED------IKLIGKHNLYNALVACVIGRIMGVPTDRMKEVLRDFRGLPHRLELVG-D 285

Query: 353 SRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
             G  +Y D   T+ N+L+  L    ++  GR+I++    G +D+G
Sbjct: 286 FGGVLVYNDSKSTTPNALQAALG---SMPDGRVILI---AGGKDKG 325


>gi|254993283|ref|ZP_05275473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-064]
          Length = 392

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 125/311 (40%), Gaps = 58/311 (18%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143
           P+++V++T   L   A++   +    ++A+TG++GK++    +  I + +       G  
Sbjct: 16  PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 75

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  IG   TI +  +D  +              +   G+ H           +H ++ + 
Sbjct: 76  NNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RHEIEVLS 111

Query: 204 LIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            IA       TN+G  HI+Y  +++    AK+ +   L P  S  +IY    + + ++  
Sbjct: 112 KIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIYP---HEETLLLG 166

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQ 311
             N   R L+ G        K   A     ++    EG  F        +   P+ GE  
Sbjct: 167 NINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVPIIGEHN 218

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+
Sbjct: 219 VFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALK 277

Query: 371 MILKNIRTITS 381
            +LK    + S
Sbjct: 278 TVLKTFMHMDS 288


>gi|195952962|ref|YP_002121252.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
 gi|254766006|sp|B4U813|MURC_HYDS0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|195932574|gb|ACG57274.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
          Length = 449

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 117/273 (42%), Gaps = 28/273 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A++G+ GK++  S +  I   +GL      PT  I    Q    T  S   L K+   +
Sbjct: 109 IAISGSHGKTTTTSMISHISHIAGLD-----PTVLIGGILQ----TFGSNAVLGKSELLI 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S         EA        +L+ +  +    TN+ ++HI Y++  +    A ++    +
Sbjct: 160 S---------EADESDGSFLKLNSVINVV---TNIDKEHIGYYKDYEDIKEAFVKFINNV 207

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    +++  DD   + ++ + H    ++++ G +      K +    +  +  +  +G
Sbjct: 208 -PFYGASVVNIDDTGVRSILSKIHK---KIITYGIESGDFQAKNIVFNSDNTRFDVFYKG 263

Query: 298 KDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              + +   +PG   VYNAL +  +   + I+  ++ + L+       R EFVG  +   
Sbjct: 264 IKLNTIELQIPGIHNVYNALASIAVSTLMEIEQPVIRDALKSFKNAKRRIEFVGEKNT-N 322

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR-IIVVF 388
            IY DY H    ++ + + +++    + I+VVF
Sbjct: 323 LIYDDYGHHPTEIKSVYEALKSKYKDKNIVVVF 355


>gi|296131673|ref|YP_003638920.1| cyanophycin synthetase [Thermincola sp. JR]
 gi|296030251|gb|ADG81019.1| cyanophycin synthetase [Thermincola potens JR]
          Length = 890

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 28/253 (11%)

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---VC 283
            NA  RL   +  +    IIY   A     ++R   AG   ++V  +  F+   K   V 
Sbjct: 609 LNADDRLASYVASRCRGNIIYFSRASDNITIRRHLGAGG--MAVFVKNGFVVYAKGNHVV 666

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL----EKL 339
            I + + +  ++ G+             V N L A+  C+ +GI  A + E L      L
Sbjct: 667 KIASVKSIPCTLSGQAL---------HNVENVLAASAGCLGLGIPVAQIKEGLLSFEPGL 717

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
              PGR  F      G ++ VDY H     + +L   + +   R+I V G  GDR     
Sbjct: 718 KGNPGRLNFF--EVAGVKVLVDYGHNPAGYQSVLATAKKMKHKRLIGVIGVPGDRQDDII 775

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRT 451
             +G+IA    D  I+ +D +PR   P ++ + +  G+      G         I A+  
Sbjct: 776 IKVGQIAGQGFDKIIIKEDADPRGRKPGEVASLLKKGVQAGGCSGKDVIIILKEINAVLK 835

Query: 452 AIEMLNKQDVLVV 464
           A+E+  + D++V+
Sbjct: 836 AVEIAERGDLVVI 848


>gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 460

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/328 (19%), Positives = 135/328 (41%), Gaps = 39/328 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 32  EIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYVKEAMDNGAVASLWKKSY------GTPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------G 141
             PI+ VD+T   L   A     +    ++ +TG++GK++V   ++ I + +       G
Sbjct: 85  GVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKG 144

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + QIG   TI    +D         +L   +       + ++S  A            
Sbjct: 145 NFNSQIGLPLTILEMKRDTE-------FLILEMGMSEKGQIRNLSRIAQPD--------- 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +G+ H++   +++    AK+ + + L  +E+   +Y  D        +  
Sbjct: 189 ----VAVITMIGQSHLETLGSRKEIAKAKLEIIDGL--RENGLFLYNGDEPLLSRNNKTS 242

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +  C+  S   +     L       ++  V   +      +  PL G+  ++N +V   +
Sbjct: 243 SVNCKTFS---EKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAV 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                + +  + E L+++++   RF+F+
Sbjct: 300 GQFYKVSTEKIQEALQQINITQMRFQFL 327


>gi|121535917|ref|ZP_01667713.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
 gi|121305488|gb|EAX46434.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
          Length = 460

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 166/423 (39%), Gaps = 67/423 (15%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           EAIVVSSA    +          + +        +L A R      E I A+ G  GK++
Sbjct: 66  EAIVVSSAIPESNPEIRAAREQGLKIFHRADIVAALMAER------EGI-AIAGAHGKTT 118

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  + +++GL      PT  I    +          Y+     Y   +   ++  E
Sbjct: 119 TTSMIALVLEKAGLD-----PTVLIGGELE----------YIGGNAKYGKGR---YLVAE 160

Query: 189 ASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           A     D+     +KL       TN+  DH+D+++T +           ++ PK+  A++
Sbjct: 161 A-----DESDGSFLKLTPRLAVVTNIENDHMDFYETMENILFTFKEFLYKIHPKDGLAVL 215

Query: 247 YADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAI-----HNKQQVTISVEGK 298
             D++Y + +   + R + +        +  + I +     I     HN+   TI +   
Sbjct: 216 CFDNSYIRNIAASLDRPYISYAINHDAEFTARNIRVHGPAIIYDAYRHNELLGTIRLN-- 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  +PG   V N+L A  + + +G+  + V + L        RF+   T  R   I
Sbjct: 274 -------VPGRHNVANSLAALAVGLHVGLTFSQVADGLASFLGAKRRFQ---TKGRVNGI 323

Query: 359 YV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIV 415
           +V  DYAH    +   L   R +   R+I VF      R +  R   G+ A + ADI ++
Sbjct: 324 WVVDDYAHHPTEITTTLLAAREMRPKRLICVFQPHRYSRTKFLRSEFGR-AFEPADILVL 382

Query: 416 TDDNPRSEDP------EKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           TD  P  E P      E I+ E+    + +  +I   N I   R   E+    D+++  G
Sbjct: 383 TDIYPAGEKPIPGITGEVIKEEVERQTNRLVTYIPDRNNIA--RYLAEIAEPGDLIITMG 440

Query: 467 KGH 469
            G+
Sbjct: 441 AGN 443


>gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 455

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  V+ DSR I  G +FV I G + DGH F+  AI  GA A +  + +         
Sbjct: 21  ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGH--------- 70

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             N P    +L V +T K +   A     K    ++ +TG++GK++    V  +  +   
Sbjct: 71  -PNKPEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAK--- 126

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200
             F +  T   ++F  +N +  P  I   K ++ +    V  + ++ +   H L Q    
Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLARP 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + +I    T +G  HI++  ++    +AKM + + L  +E    IY  D     + +RA
Sbjct: 179 DVAVI----TMIGEAHIEFFGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230

Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   + G+     IH   +   +H+       + G D +F  P+ G   V NA+ A
Sbjct: 231 AKLSQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287


>gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
 gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
          Length = 481

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 158/381 (41%), Gaps = 41/381 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR    G  FVA  G + DG+ F  +A+A+ A  +V++         A  R  
Sbjct: 26  VRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEALARAA-TVVLTGPAPKGCAEAAERHG 84

Query: 90  TPILVV--DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             +L    D+  +FL   A      +P+  ++ VTG+ GK++    +      +GL + F
Sbjct: 85  CALLRAEGDDGEEFLLRLAGAWRRLNPQWTVVGVTGSVGKTTTKDMLA-----AGLRARF 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE--ASSHGLDQHRLDGI- 202
           ++   +T  +F  +N +  P        L+ LS+     V V     +H  +  RL    
Sbjct: 140 RV--HATAGNF--NNLIGLP--------LTLLSADPSDEVVVAEMGMNHAGELSRLAACA 187

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES------PAI-IYADDAYSKE 255
           +      TN+G  HI    ++++   AK  +   + P  S      P + + +D+ ++  
Sbjct: 188 RPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPSSSAQGAVRPCLALTSDNDFAAL 247

Query: 256 VMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTIS-VEGKDFDFLFPLPGE 309
           +    A  AG  VL VG  G+     +   I        +  +S  +G        +PG 
Sbjct: 248 IEDEYAAPAGVEVLHVG--GRPCDDVRAGGIALDDGGLPRFELSFADGWSEPCTLGMPGR 305

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V + L+A  +C  +G+D    L+ + ++     R E V    R   I   Y  + +S+
Sbjct: 306 HVVSDVLLAMAICDRLGVDRHDALDRIARMPQTHMRLEVVTAPGRPRMIDDSYNASPSSV 365

Query: 370 EMILKNIRTIT-SGRIIVVFG 389
              L  + ++  +GR + V G
Sbjct: 366 AAALDVLCSMACTGRRVAVLG 386


>gi|294793905|ref|ZP_06759042.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
 gi|294455475|gb|EFG23847.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
          Length = 460

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 134/338 (39%), Gaps = 60/338 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
            G +AIV S+A         IR + P +V    +    L  S +        + +AV G 
Sbjct: 63  NGVDAIVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTDGIAVAGA 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S  S + QI     L      PT  I               YL  +    S  G  
Sbjct: 114 HGKTSTTSMIGQI-----LVEANADPTVIIGGEVD----------YLKGS----SCLGKG 154

Query: 184 HVSVEASSHGLDQHRLDG--IKLIAGSF--TNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           H SV      ++    DG  +KL   +   TN+  DH+D+++T     NA    F E LP
Sbjct: 155 HFSV------VEADESDGSFLKLHPHTIVITNIEDDHMDHYKTMDNLLNAFCE-FVETLP 207

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTI 293
           +   AI+  D+   + VM R        ++ G      Y  K IH      +++     I
Sbjct: 208 EAGKAIVCGDNENIRYVMSRVKRT---FITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGI 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++ G+       +PGE  V N+L A   A  C   G+++  + + L K      RFE  G
Sbjct: 265 NI-GR---ISLCVPGEHNVLNSLAAFIVAHEC--CGVENRFITKALGKFIGAKRRFETKG 318

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            +  G  +  DYAH    ++  L+  + +   R+I VF
Sbjct: 319 -HVAGVWVVDDYAHHPTEIKATLRAAKELEKHRVICVF 355


>gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 481

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 146/373 (39%), Gaps = 28/373 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +DSR I AG +FVA+ G + D H F+    + GA A ++S+             N
Sbjct: 32  ITRVGTDSRQIDAGELFVALAGERFDAHDFLSDVASSGAGAALISN-------KDKCPKN 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + +++TR  L   A          +  VTG++GK++V   +  I + +      +G 
Sbjct: 85  LPAVCIEDTRAALGQLAKAWRVTRHIPLALVTGSNGKTTVKEMIASIFKAA------VGE 138

Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           + T+ +    +N +  P  +   +    L+    G+ H    A    + Q     I LI 
Sbjct: 139 SHTLVTKGNLNNDIGLPLTLLKLRPTDQLAVVELGMNHPGETALLADIAQAN---IALI- 194

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T  A       +    LP++  A+   D  ++   + R   A  +
Sbjct: 195 ---NNAQREHQEFMATVAAVAQEHADVIRA-LPQDGIAVFPGDSEFTD--LWRKAAADRK 248

Query: 267 VLSVGYQGKFIHLKKVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           VL         +        + N  ++ ++ E           G   V NAL A+ + IA
Sbjct: 249 VLDFVLSSTQTNASSAVGGKLLNDGRIEVNTENGSIQIQLNTLGNHNVRNALAASAVAIA 308

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            GI    + E LE    V GR +    ++    I   Y    +S+   +  ++   +   
Sbjct: 309 AGISLKKIQEGLESFQPVNGRMQAKTIDANHTLIDDSYNANPDSVRAAIDALKQSGNNAW 368

Query: 385 IVVFGCGGDRDQG 397
           IV+   G   DQG
Sbjct: 369 IVLGDMGEVGDQG 381


>gi|20809114|ref|NP_624285.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517793|gb|AAM25889.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 879

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 38/376 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK++V   V  I +  G   + +G T+T   +  D  +          A + 
Sbjct: 480 IVSITGTNGKTTVTRMVAHILKTYG---YTVGMTTTDGIYIDDKCIYKGDNTGPKSARTC 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232
           L+ + +    +E +  G+ +  L       G  TN+  DH  ID   T +  A+  A   
Sbjct: 537 LADKNIDAAVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKA--- 593

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNK 288
           L  E +  +  +++ ADD  +  + K+A   G  +    Y       + +     A++ K
Sbjct: 594 LVVEAVKDDGYSVLNADDPMTPYLAKKAK--GKIIYFSMYDNNLTVKRHIENGGIAVYVK 651

Query: 289 QQVTISVEGKDFDF--LFPLPGEF------QVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           + V +   G+      +  +P          + N+L A      + +   ++ + ++  +
Sbjct: 652 EGVIVIANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTFY 711

Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 PGRF      S   R+ VDY H    ++ +++  R + + R+I V G  GDR  
Sbjct: 712 PDTTHNPGRFNLFNIGSF--RVLVDYGHNVEGIKKVIEAARKLDANRLIGVIGVPGDRMD 769

Query: 397 GKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKGN------RIEA 448
                +G++     D I I  D++ R     ++   +  G I G ++K N        EA
Sbjct: 770 SSIFKVGEVCGGGFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKETEA 829

Query: 449 IRTAIEMLNKQDVLVV 464
           ++ A+      D++VV
Sbjct: 830 LKAAMHSAEAGDLIVV 845


>gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 455

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  V+ DSR I  G +FV I G + DGH F+  AI  GA A +  + +         
Sbjct: 21  ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGH--------- 70

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             N P    +L V +T K +   A     K    ++ +TG++GK++    V  +  +   
Sbjct: 71  -PNKPEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAK--- 126

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200
             F +  T   ++F  +N +  P  I   K ++ +    V  + ++ +   H L Q    
Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLARP 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + +I    T +G  HI++  ++    +AKM + + L  +E    IY  D     + +RA
Sbjct: 179 DVAVI----TMIGEAHIEFFGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230

Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   + G+     IH   +   +H+       + G D +F  P+ G   V NA+ A
Sbjct: 231 AKLSQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287


>gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 448

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 164/378 (43%), Gaps = 59/378 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   +G +FVA+ G++ DGH +I  A++QGA A V++ A +  D +  I  ++  
Sbjct: 28  VTTDSRADCSGALFVALKGDRFDGHEYIDAAVSQGAVA-VMAQAKANADVAQIIVPDS-- 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQ---ICQRSGLSSF 145
             +    +  +L  SR  G     + AVTG++GK++V    AS + Q   +C+  G  + 
Sbjct: 85  --LAGLGRLGALNRSRFNGP----VAAVTGSAGKTTVKELLASILSQRGDVCKTQGNFNN 138

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG   ++    +++R             S +   G + V   A +  L + ++      
Sbjct: 139 HIGVPLSLLQLTEEHR-------------SAVFELGASAVGEIAYTVALARPQV------ 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAG 264
                N    H++      +   AK  +    LP++  A++  DDA +S  V      AG
Sbjct: 180 -AILNNAAAVHVEGFGDLASIVKAKGEIVCG-LPEDGVAVLNKDDANFSAWV----EMAG 233

Query: 265 CR-VLSVGY------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            R V+S G       + + IHL+      N     +S      D   PLPG   V NAL 
Sbjct: 234 ARKVISFGLDDSAMVRAQNIHLEL-----NGSTFRLSAPEGGIDATLPLPGAHNVRNALA 288

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTSNSLEMILK-N 375
           AA   +A+G     V + L     V GR  + +G N   G + +D  + ++   M    +
Sbjct: 289 AAAAALALGWTLEEVRDGLASAAPVKGRMNKLLGIN---GSVILDDTYNASPTSMKAAID 345

Query: 376 IRTITSGRIIVVFGCGGD 393
           +     GR IV  G  G+
Sbjct: 346 VLARYPGRRIVALGHMGE 363


>gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 457

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 136/330 (41%), Gaps = 35/330 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88
           IN VS D+R I+   +++ I+G K +GH FI +A+  GA A       +L D +  I + 
Sbjct: 27  INGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKAMGNGATA-------TLWDKNQPIPNI 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V++T   +   A     +    I+ +TG++GK+S    +  I Q    +   +G
Sbjct: 80  DFPFILVEDTLDAIQTLAKAYRNQLNVKIIGITGSNGKTSTKDILFNILQTVYKTHKTLG 139

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAG 207
                     +N L  P        L+ L     T ++V E    GL +  L  +  IA 
Sbjct: 140 NL--------NNHLGVP--------LTLLEMAENTEIAVIEMGMSGLGEIEL--LSKIAS 181

Query: 208 S----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           S     TN    HI+   + +    AK+ + E L P      IY  D+    V     + 
Sbjct: 182 SDVAIITNSTNVHINDLGSVENILKAKLEIIEGLKP--HGLFIYFGDSPPLRVGVEKLDL 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLC 322
             + ++ G      +  K+ +  N + +   + G D   LF  + G  Q+YNA  A  + 
Sbjct: 240 KQKKVTFGINRDNDYTVKLISSEN-EGIYFELVGSDSPRLFLSMLGNHQIYNAAAAIAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               I    + E + K+     R E +  N
Sbjct: 299 QYFNITLEKIQEGMLKIEATGMRNELIKCN 328


>gi|294792040|ref|ZP_06757188.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
 gi|294457270|gb|EFG25632.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
          Length = 460

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 132/338 (39%), Gaps = 60/338 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
            G +AIV S+A         IR + P +V    +    L  S +        + +AV G 
Sbjct: 63  NGVDAIVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTDGIAVAGA 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S  S + QI     L      PT  I               YL  +    S  G  
Sbjct: 114 HGKTSTTSMIGQI-----LVEANADPTVIIGGEVD----------YLKGS----SCLGKG 154

Query: 184 HVSVEASSHGLDQHRLDG--IKLIAGSF--TNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           H SV      ++    DG  +KL   +   TN+  DH+D+++T     NA    F E LP
Sbjct: 155 HFSV------VEADESDGSFLKLHPHTIVITNIEDDHMDHYKTMDNLLNAFCE-FVETLP 207

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTI 293
           +   AI+  D+   + VM R        ++ G      Y  K IH      +++     I
Sbjct: 208 EAGKAIVCGDNENIRYVMSRVKRT---FITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGI 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++          +PGE  V N+L A   A  C   G+++  + + L K      RFE  G
Sbjct: 265 NIS----RISLRVPGEHNVLNSLAAFIVAHEC--CGVENRFITKALGKFIGAKRRFETKG 318

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            +  G  +  DYAH    ++  L+  + +   R+I VF
Sbjct: 319 -HVAGVWVVDDYAHHPTEIKATLRAAKELEKHRVICVF 355


>gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 456

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 150/366 (40%), Gaps = 31/366 (8%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   ++   L+I    + E  +  VS D+R I  G +F+   G   +GH F+ QA  +GA
Sbjct: 3   KSLQQIAEWLTIENQSFPETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A    S + + + +    ++ P++ V++    L   A     +H    + +TG++GK+S
Sbjct: 63  AA----SLWMIDEPNPP--AHLPLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKTS 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +      +G  S       TI +F  +N+L  P  I     L       V+ + + 
Sbjct: 117 SKDIL------AGALSPYFKVQKTIGNF--NNQLGLPITI-----LQLDEDTEVSVLEMG 163

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +   +  +      TN+G  H+    +++    AK  + + L   E   + Y 
Sbjct: 164 MSGFGEIEFLTNLARPHYAIITNIGEAHMQDLGSREGIAKAKFEIVKGL--SEEGILFYD 221

Query: 249 DDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
            D       V K  H    +  + G+  + ++L         Q  +  VEG    DF   
Sbjct: 222 GDEPLLQNLVAKTPH---LKTQAFGFSQE-LNLAASQIKATAQGSSFHVEGLIQGDFFIS 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE QV N L A  +  ++G+    + E L+K+ +   R + V     G  ++++ A+ 
Sbjct: 278 VLGEHQVKNTLSAMLVSKSLGLTDEQIREALKKVVLTDMRMQLVPV---GDLLFINDAYN 334

Query: 366 SNSLEM 371
           +    M
Sbjct: 335 AAPTSM 340


>gi|319944697|ref|ZP_08018961.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
 gi|319741946|gb|EFV94369.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
          Length = 489

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 119/302 (39%), Gaps = 64/302 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++  S V  I  ++GL  +F IG    ++S   + RL +            
Sbjct: 108 VAIAGTHGKTTTTSLVASILAKAGLDPTFVIG--GRLNSAGVNARLGSGD---------- 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  ++ VEA     D   L+ + +IA + TN+  DH+D +    A        F  
Sbjct: 156 -------YIVVEADES--DASFLNLLPMIA-AVTNIDADHMDTYGHDMARLKQAFVDFLN 205

Query: 237 LLPKESPAIIYADDAYSKEVMK----------RAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            LP    A++  DD + +E++              +A  R + V  +G  +H + +    
Sbjct: 206 RLPFYGSAVLCLDDPHVREIVPFVSKPTITYGLGEDAQVRAVDVRAEGDRMHFQVLRENE 265

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +V+++           L GE  V NAL A  +   +G+ +  ++  L +   V  RF
Sbjct: 266 PPLEVSLA-----------LSGEHNVRNALAAIAIATELGVKAEAIVAALAEFRGVGRRF 314

Query: 347 EFVG---TNSRGGR----------------IYVDYAHTSNSLEMILKNIR-TITSGRIIV 386
           E  G      R GR                +  DY H    +E  L+ +R    + R+++
Sbjct: 315 ERYGEVPVPVREGREGAQAGQTAAASGTFTLIDDYGHHPVEIEATLRAVRGAFPTRRLVL 374

Query: 387 VF 388
            F
Sbjct: 375 AF 376


>gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 441

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 130/312 (41%), Gaps = 43/312 (13%)

Query: 83  SATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           S  + SN PIL     +K   +S  A  L     + I+AV+GT+GK++V   + +I + +
Sbjct: 65  SPGVYSNIPILKKARKQKIKIMSELAFSLENSKYKKIMAVSGTNGKTTVTDLISKIIKAA 124

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              S   G    I     D  L T                  T +++E SS+ L      
Sbjct: 125 HKDSIVSG---NIGCPLADKALKTTE---------------TTFITMELSSYQLGD--TP 164

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +       N+  DH++YH+T +AY  AK  +F      +   I Y DD   +++ ++ 
Sbjct: 165 DFRPAISVLLNITPDHLEYHKTMKAYLRAKENIFINQRDGDFTVINY-DDKICRKIFEKT 223

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALV 317
             A      V +  K   LKK    ++   + I+V+ K +  + P   + G   + N L 
Sbjct: 224 KAA------VIFFSK-TPLKK-GVFYDSGSIVINVKEKHY-VIKPKINIVGTHNIENILA 274

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEM 371
           A     A G+  A++ + + K   V  R EFV T    G  Y + + ++N      +LE 
Sbjct: 275 AVAASYAAGVKPAVIEKIVSKYKGVEHRIEFVKT--LNGVDYYNDSKSTNIDSTRVALES 332

Query: 372 ILKNIRTITSGR 383
             KNI  I  GR
Sbjct: 333 FDKNILIIMGGR 344


>gi|260430914|ref|ZP_05784885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414742|gb|EEX08001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 464

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 113/284 (39%), Gaps = 44/284 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++AVTG++GKS+ A+ +  I   +G  +   G                     + + 
Sbjct: 119 PPRVIAVTGSNGKSTTAALIHHILTEAGREAQLAG--------------------NIGRG 158

Query: 174 LSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +  +   G   V V E SS+  +  R   +      FTNL  DH+D H     YF AK R
Sbjct: 159 VLDIDPGGDGSVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRR 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR-AHNAG-CRVLSV-------GYQGKFIHLKKVC 283
           LF E  P    A+I  D+     +  + A  AG  RV+ V       G   +    K   
Sbjct: 217 LFSEGGPDR--AVIGVDEIEGAFLAGQLAEGAGDDRVIRVSVARKLAGPGWQVFARKGFL 274

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           + + K +   S++ +D      LPG     NA  A   C A+G+   ++ + L     +P
Sbjct: 275 SEYRKGRQAASIDLRDIKG---LPGTHNHQNACSAYAACRALGLAPKMIEDALHSYPGLP 331

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITSG 382
            R + +   +  G  +V+ +  +N    +      K IR I  G
Sbjct: 332 HRSQVIAEAN--GVTFVNDSKATNVDSAVKALGAFKKIRWICGG 373


>gi|260495144|ref|ZP_05815272.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
 gi|260197201|gb|EEW94720.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
          Length = 609

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 155/369 (42%), Gaps = 51/369 (13%)

Query: 9   KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           KDF E++     N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 174 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  +V  +          I+    + V+D       L A++   K    ++ +TG+
Sbjct: 229 LDKGASLVVADNT--------NIKDKRVVKVIDTIATMQDL-ATKYRKKLDIQVVGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V        L S +     T  ++  +N +  P  +     L+    +   
Sbjct: 280 NGKTTTKDIVYS------LLSTKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  L E +  K +
Sbjct: 327 VLEMGMSSLG-EIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNT 385

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              +  DD Y              V  VG+     +  +     NK    + ++GK+++ 
Sbjct: 386 --FVCGDDEYL---------GKLDVNKVGFNENNDYKIESYEFSNKGSKFV-LDGKEYE- 432

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  + N  +   L   IG+    + + L+++ +   RF+ +     G  IY++ 
Sbjct: 433 -MSLLGKHNISNTAITIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI---GEDIYIND 488

Query: 363 AHTSNSLEM 371
           A+ ++ + M
Sbjct: 489 AYNASPMSM 497


>gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 455

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 142/349 (40%), Gaps = 48/349 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S D+R IQ G +FV   G   +GH ++ QA  +GA A +       Q         
Sbjct: 24  VSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKGAGASL------WQKDEPNPPDG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142
            P+L VD+    L   A     +H    + +TG++GK+S    +        ++ +  G 
Sbjct: 78  IPLLFVDDPEIALQEMARAYRLEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGN 137

Query: 143 SSFQIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            + Q+G   TI    +D  +      +     + +L+     H++V              
Sbjct: 138 FNNQLGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPHMTV-------------- 183

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   TN+G  H+    ++     AK  + + + P E       D+   +E++ +  
Sbjct: 184 -------ITNIGEAHMQDLGSRAGIAQAKFEIIQGMQP-EGLLFYDGDEPLLQELVAKEQ 235

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVA 318
           +     ++ G +    ++   + A  N    T    +EG   DF   + G+ QV N L+A
Sbjct: 236 H--INAVAFGLEPDNLLYADHIHANANGSSFTTHGMIEG---DFFISVLGKHQVKNTLIA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTS 366
             +   +G+++  +   LE + +   R + V GTN   G ++++ A+ +
Sbjct: 291 MLISNQLGLNNEQIRTSLEHVVLTDMRMQQVQGTN---GALFINDAYNA 336


>gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
 gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
          Length = 456

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL   LS   +   + + + VS DSR I+ G +FVA+ G + DGH ++    A+GA  
Sbjct: 7   FSELSQALSARVLS-SDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLNDVAAKGAVG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V              S  P L+V +TR  L    +       + + AVTG+SGK++V 
Sbjct: 66  ALVQCEVP--------ESTLPQLLVADTRLALGQLGALNRAAFDKPVAAVTGSSGKTTVK 117

Query: 131 SFVQQICQRSG 141
             +  + +  G
Sbjct: 118 ELLAGVLRTRG 128


>gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
 gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
          Length = 825

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 154/365 (42%), Gaps = 34/365 (9%)

Query: 29  KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           KI  V +DSR +      +F A+   + DGH +IP+   +G    VV+   +  D+ AT 
Sbjct: 23  KIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGVRNFVVTEVPA--DY-ATE 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-ICQRSGLSSF 145
            +    L V ++ + L   A R   +    I+ +TG++GK+ V  ++ Q +C    +   
Sbjct: 80  YAEANFLKVVDSLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLCDDMFI--- 136

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                 T S  + ++++  P  ++L   L+  +  G+    +      L     D I+  
Sbjct: 137 ------TRSPRSYNSQVGVPLSVWL---LNEHTQVGIFEAGISQPGEMLALR--DIIQPT 185

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRAHN- 262
               TNLG  H      Q+ + + +M+  E+L L  ++  ++Y  DD      +    + 
Sbjct: 186 IAVLTNLGDAH------QENFISKEMKCKEKLILFHDAKTVVYNGDDPIVNGCVNELEDF 239

Query: 263 AGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            G R+  S+  +     +K V        VT   +G +  +  P   +  V N+   A +
Sbjct: 240 KGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSFACAAV 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIRT 378
            + +G+   ++ E +++L  +  R E V     G  +  D Y    NSL++ L   N R 
Sbjct: 300 ALTLGVGVDVLDERMQQLEPIAMRLE-VKQGQHGCTLINDSYNSDINSLDIALDFMNRRP 358

Query: 379 ITSGR 383
              GR
Sbjct: 359 DHQGR 363


>gi|319791669|ref|YP_004153309.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
 gi|315594132|gb|ADU35198.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
          Length = 494

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 126/318 (39%), Gaps = 43/318 (13%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A A  +GA+A+V S+A    +          I VV        L   RL     + 
Sbjct: 54  FVGHAAAHIEGADAVVTSTAVQSDNPEVLAAREKRIPVVPRALMLAELM--RL-----KQ 106

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  +   +GL      PT     F    RL +      A A + 
Sbjct: 107 GIAIAGTHGKTTTTSLVASVLDAAGLD-----PT-----FVIGGRLNS------AGANAQ 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L S    ++ VEA     D   L+ + ++A   TN+  DH++ +    A        F  
Sbjct: 151 LGSG--DYIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFAKLKKAFVDFLH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IHNKQQV 291
            +P    AI+  DDA  ++++ +     C V S G+    Q + + ++ V   +H   Q 
Sbjct: 206 RMPFYGVAILCTDDAAVRDIVAQVT---CPVTSYGFGEDAQVRAVDVRAVGGQMHFTAQR 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              V   D   +  LPGE  V NAL    + + +GI    V   L     V  RF+  G 
Sbjct: 263 RNGVTLPDLPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGE 322

Query: 352 NSRGG-----RIYVDYAH 364
            S  G      +  DY H
Sbjct: 323 VSVPGGTGSFTVIDDYGH 340


>gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG]
 gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF]
 gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
 gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
          Length = 473

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 34/247 (13%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R    V +DSR ++ G +FVA  G + DGH +   A+A GA A++ +    +        
Sbjct: 26  RVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAAGAVAAGAVAVLATRPLGV-------- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P +VVD+    L   A  +  +    ++A+TG++GK+S    + Q+  R G + +  
Sbjct: 78  ---PAIVVDDVTAALGALARTVVERLGTAVIAMTGSAGKTSTKDLIAQLLSRRGPTVWPP 134

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHR-LDGIKLI 205
           G          +N +  P        L+ L  ++   H+ +E  + G+   R L  +   
Sbjct: 135 G--------NLNNEIGLP--------LTALRVTEETRHLVLEMGARGIGHIRYLTSLTPP 178

Query: 206 A-GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           + G   N+G  HI     ++    AK  + E  LP+   A++ ADD   + +  R     
Sbjct: 179 SIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEA-LPESGLAVLNADDPLVRGMAPRTR--- 234

Query: 265 CRVLSVG 271
            RVL  G
Sbjct: 235 ARVLLFG 241


>gi|269798173|ref|YP_003312073.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282850402|ref|ZP_06259781.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
 gi|269094802|gb|ACZ24793.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282579895|gb|EFB85299.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
          Length = 460

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 132/338 (39%), Gaps = 60/338 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
            G +AIV S+A         IR + P +V    +    L  S +        + +AV G 
Sbjct: 63  NGVDAIVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTDGIAVAGA 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S  S + QI     L      PT  I               YL  +    S  G  
Sbjct: 114 HGKTSTTSMIGQI-----LVEANADPTVIIGGEVD----------YLKGS----SCLGKG 154

Query: 184 HVSVEASSHGLDQHRLDG--IKLIAGSF--TNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           H SV      ++    DG  +KL   +   TN+  DH+D+++T     NA    F E LP
Sbjct: 155 HFSV------VEADESDGSFLKLHPHTIVITNIEDDHMDHYKTMDNLLNAFCE-FVETLP 207

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTI 293
           +   AI+  D+   + VM R        ++ G      Y  K IH      +++     I
Sbjct: 208 EAGKAIVCGDNENIRYVMSRVKRT---FITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGI 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++          +PGE  V N+L A   A  C   G+++  + + L K      RFE  G
Sbjct: 265 NIS----RISLRVPGEHNVLNSLAAFIVAHEC--CGVENRFITKALGKFIGAKRRFETKG 318

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            +  G  +  DYAH    ++  L+  + +   R+I VF
Sbjct: 319 -HVAGVWVVDDYAHHPTEIKATLRAAKELEKHRVICVF 355


>gi|158321131|ref|YP_001513638.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158141330|gb|ABW19642.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 882

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 22/206 (10%)

Query: 207 GSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-- 262
           G  TN+  DH  ID   T +   + K  + E + P E  AII A+D +++ + +RA    
Sbjct: 569 GLVTNIDDDHMGIDGINTLEDMADVKSLVLEAIKP-EGYAIINAEDTFARRMAERARGNI 627

Query: 263 ---AGCR----VLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              + C     ++    QGK   ++  KK+C     +++ + +E +          E  +
Sbjct: 628 VYFSQCDTNELIIEHKKQGKKAIYLKEKKICIFDGNKEIDV-IEIEKIPATLGGILEHNI 686

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNS 368
            N+L A     A+G+D   + E L   H       GRF      +   ++ +DY H    
Sbjct: 687 ENSLCAVAATFALGVDIHRIYEGLRDFHTDAVHNMGRFNVFEVANF--KVILDYGHNIGG 744

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDR 394
              +L  +  + + R+I V G  GDR
Sbjct: 745 YNRVLNGLNKMKANRLIGVIGVPGDR 770


>gi|300813520|ref|ZP_07093855.1| Mur ligase middle domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512366|gb|EFK39531.1| Mur ligase middle domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 286

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 100/231 (43%), Gaps = 27/231 (11%)

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + ++HV +E SS      R++ I     SF NL R+HID H + + YF  K ++      
Sbjct: 4   KNISHVVMEVSSSAQQMLRVNNIDFDIVSFGNLSREHIDQHGSFENYFRDKSKIILN-AK 62

Query: 240 KESPAIIYADD---------------AYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVC 283
           K S A++  D+                +S E +          LS G+ GKF+ H+    
Sbjct: 63  KGSFALLNMDNEHIASLKEKTKASVLTFSMENLDSDFGISKLDLSTGF-GKFMFHV---- 117

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N+    I+++ + F+      G   V N ++A  L + + +D  ++L  L+    V 
Sbjct: 118 ---NRDIKEINLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALKNFKGVE 174

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            RFE +       ++  D+     ++++ +  +  ++   + +++   G+R
Sbjct: 175 RRFELIY--DEKFKVLDDHFANEKNIDVTMTTLSQMSYKNLHILYAIRGNR 223


>gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 146

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 16/126 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +I  +  DSR I  G +F+ + G     ED H F+  A+  GA A++V    +++     
Sbjct: 22  EITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142
                P ++V + R  +++ AS  YG +P N   ++ +TGT+GK++ +  +++I    G 
Sbjct: 77  ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131

Query: 143 SSFQIG 148
            +  +G
Sbjct: 132 HTGLMG 137


>gi|302550798|ref|ZP_07303140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468416|gb|EFL31509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 35/209 (16%)

Query: 64  IAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + +G+E IV +  +      F+A  R+  P+             A RL G      LAVT
Sbjct: 70  LPEGSELIVTAPGWKPDKPLFAAADRAGVPVW-------GDVELAWRLRGPDAAPWLAVT 122

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GK++    +  I   +GL +  +G                   + L  A+  L  + 
Sbjct: 123 GTNGKTTTVQMLASILTAAGLRTAAVGNIG----------------VSLLDAV--LGEEP 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E      
Sbjct: 165 YDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE----GN 218

Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
             A +Y  AD A    V +     GCR +
Sbjct: 219 RVACVYNVADKATEDLVREADVEEGCRAI 247


>gi|157825688|ref|YP_001493408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
 gi|157799646|gb|ABV74900.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
          Length = 492

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 24/142 (16%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N +A+TGT+GKS+  + +  I   SGL  +Q+     +             P   AKA  
Sbjct: 105 NFIAITGTNGKSTTTALISHILNSSGL-DYQVAGNIGV-------------PALQAKA-- 148

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S  G     +E SS  LD  ++   K+      N+  DH+D HQ    Y  AK ++F+
Sbjct: 149 --SKDGYV---LELSSFQLDLVKIFTAKI--AVLLNITPDHLDRHQHMNGYIAAKSKIFD 201

Query: 236 ELLPKESPAIIYADDAYSKEVM 257
             + K+S A+I  D+ Y +E+ 
Sbjct: 202 R-MDKDSYAVINIDNDYCREIF 222


>gi|322807873|emb|CBZ05448.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum H04402
           065]
          Length = 458

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 53/323 (16%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           ++A I S+ P  +++   K + L     F   L   +  NI A++GT GK++  S +  +
Sbjct: 75  YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNI-AISGTHGKTTTTSMLSHV 132

Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             ++      + PT  +         N     S  ++ +A  Y SS              
Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174

Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                   +K     G+  N+  DH+DY++      NA  + F +L+PK+   + Y +D 
Sbjct: 175 --------LKFFPYIGAILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             + ++K A    C V++ G     I      + +K C   +     +    K F     
Sbjct: 226 NIQSIIKEA---SCNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  + N+L +  + +A  +    ++E +E       RFE  G  +    I  DYAH 
Sbjct: 279 VPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHH 337

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
              +   L   +     ++  VF
Sbjct: 338 PTEISATLDAAKKYPHNKLFCVF 360


>gi|153940015|ref|YP_001392902.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum F
           str. Langeland]
 gi|166222975|sp|A7GJE2|MURC_CLOBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152935911|gb|ABS41409.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|295320879|gb|ADG01257.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           230613]
          Length = 458

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 53/323 (16%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           ++A I S+ P  +++   K + L     F   L   +  NI A++GT GK++  S +  +
Sbjct: 75  YTAAIASDNP-EIIEAKEKNIKLMDRADFLGNLMKGYKYNI-AISGTHGKTTTTSMLSHV 132

Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             ++      + PT  +         N     S  ++ +A  Y SS              
Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSF------------- 174

Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                   +K     G   N+  DH+DY++      NA  + F +L+PK+   + Y +D 
Sbjct: 175 --------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             + ++K A+   C V++ G     I      + +K C   +     +    K F     
Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  + N+L +  + +A  +    ++E +E       RFE  G  +    I  DYAH 
Sbjct: 279 VPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHH 337

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
              +   L   +     ++  VF
Sbjct: 338 PTEISATLDAAKKYPHNKLFCVF 360


>gi|56459545|ref|YP_154826.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
 gi|62900480|sp|Q5R0M3|MURD_IDILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56178555|gb|AAV81277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
          Length = 463

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 137/332 (41%), Gaps = 45/332 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            A+ I+ S    L++    +  +  I +V +    + LFA     K P  I+AVTG++GK
Sbjct: 79  AADLIIASPGIDLREDPVVLARDADIPIVGD----VELFAQE--SKLP--IVAVTGSNGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V   V+ + ++ G             + A    +  P    L      L  Q    V 
Sbjct: 131 STVTRMVEFVAKQCG------------KNVAAAGNIGVPVLDLL------LQEQHPDAVI 172

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +  +KL A +  N+  DH+D + T   Y  AK R+F       + A  
Sbjct: 173 LELSSFQLES--VSSLKLKAAALMNISADHMDRYCTLDEYVKAKQRIF-------THAKT 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--- 303
           +  +   ++     H    ++++ G      H   +    ++    ++V       L   
Sbjct: 224 WILNRQQQDTWP--HPVTGKLMTFGNDSHPKHFGLLSGNIDRVSGPVAVTFDGSVVLRAD 281

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G   + N   A  LC AI ID    +  +++   +P R E V  N   G ++V+ 
Sbjct: 282 QLQLQGIHNLVNVQAALALCQAIDIDIEAAVRAVKEFKGLPHRCELVSDNE--GVLWVND 339

Query: 363 AHTSN--SLEMILKNIRTITSGRIIVVFGCGG 392
           +  +N  +    ++ +R + +GR++++ G  G
Sbjct: 340 SKATNIGATAAAVEGLRPMINGRLLLIAGGVG 371


>gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           L20]
 gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 464

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S+D+R      +F A+ G   D H ++  A+ QG+ A+VV     +         +
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P +VV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+
Sbjct: 76  VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 464

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S+D+R      +F A+ G   D H ++  A+ QG+ A+VV     +         +
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P +VV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+
Sbjct: 76  VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 464

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S+D+R      +F A+ G   D H ++  A+ QG+ A+VV     +         +
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P +VV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+
Sbjct: 76  VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|283768879|ref|ZP_06341790.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219]
 gi|283104665|gb|EFC06038.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219]
          Length = 458

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 47/337 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTP-------ILVVDNTRKFLSLFASRLYGKHPEN 116
           I Q AE I  ++ Y L  ++A I  + P       + +    RK   L A  +  +H  N
Sbjct: 58  IGQKAENI--TNKYKLVVYTAAIHPDNPEYQQAMKLNIPLMNRK--DLLAEVM--EHYHN 111

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKA 173
            +A+ GT GK++  + +  I       + ++ PT +I +  +    N     S  +LA+A
Sbjct: 112 SIAIAGTHGKTTTTAMLSYI-----FLAAELDPTISIGAHFKKIHGNVRIGHSEAFLAEA 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y +S                      ++ +A    N+  DH+D+ +  Q   N+    
Sbjct: 167 CEYTNS-------------------FLALRPLASIILNIEEDHLDFFKDLQDIRNS-FHQ 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVT 292
           F      E   II++   + +E+++  H    +V+  G     +  K +  + H   Q  
Sbjct: 207 FVLNTSSEGALIIHSQIDHVEEIVEGYHG---QVIQFGLNKGDLCAKNIQHLRHGGNQFE 263

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + +  +    +  P  G+  + NAL A G+ I+ G+    + + L++      RFE  G 
Sbjct: 264 VWMRSERLGSIELPTGGKHNITNALAAIGVAISFGVPFEAIQQGLKEFEGADRRFEKKGF 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +G  I  DYAH    ++  L   +     R+I+VF
Sbjct: 324 -YQGAEIVDDYAHHPQEIQATLNMAKDYPHQRLIMVF 359


>gi|210634246|ref|ZP_03298044.1| hypothetical protein COLSTE_01966 [Collinsella stercoris DSM 13279]
 gi|210158882|gb|EEA89853.1| hypothetical protein COLSTE_01966 [Collinsella stercoris DSM 13279]
          Length = 263

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 26/168 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA RL    PE   A+TGT+GK++V S   ++ + SGL+S  +G     +    D R   
Sbjct: 103 FAWRL---SPERWCAITGTNGKTTVTSLTNELLRASGLASVAVGNIGNAAIHEVDRR--A 157

Query: 165 PSPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               ++A+  SY +++    H  V                       N+  DH+ +H+T 
Sbjct: 158 EGEWFVAELSSYQIATTAELHPRV-------------------AILLNITPDHLAWHRTH 198

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + Y  AK+ LF   + +   AI+  +D        R +  G RVL +G
Sbjct: 199 ENYALAKIDLFRN-MDESDLAIVNVEDEGIAAFADRVYVPGRRVLKLG 245


>gi|167035502|ref|YP_001670733.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida GB-1]
 gi|189029021|sp|B0KFS5|MURC_PSEPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166861990|gb|ABZ00398.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida GB-1]
          Length = 482

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 168/429 (39%), Gaps = 68/429 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 73  AATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  
Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
           Q +  V     +        D +    G F  L +  +++      Y  A M L      
Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234

Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+LP+ + P + Y    +S+E   RA N    V   G Q  F  L++ C     + + +S
Sbjct: 235 EILPQVKRPTVTYG---FSEEADIRAIN----VRQQGMQTHFTVLRRDC-----EPLEVS 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353
           V          +PG   V NAL    +    GI    +++ L     V  RF+  G    
Sbjct: 283 VN---------MPGNHNVLNALATIAIATDEGITDEAIIQGLSGFQGVGRRFQVYGELPV 333

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            GG + +  DY H    +  ++K +R    S R+++V+     R    R +       L 
Sbjct: 334 EGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQP--HRYSRTRDLYDDFVQVLG 391

Query: 411 D--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           D  + ++ +  P  E+  P     ++ H I       P +IE+G  +  +     +L   
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPL--VKPLLRAG 449

Query: 460 DVLVVAGKG 468
           D+L+  G G
Sbjct: 450 DILICQGAG 458


>gi|73542270|ref|YP_296790.1| cyanophycin synthetase [Ralstonia eutropha JMP134]
 gi|72119683|gb|AAZ61946.1| Cyanophycin synthetase [Ralstonia eutropha JMP134]
          Length = 878

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 147/377 (38%), Gaps = 38/377 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TGT+GK+ VA  V ++ Q   LS    G   +   F     +              
Sbjct: 486 VVGITGTNGKTVVAKLVARLLQ---LSGKHTGLACSDGLFLDRRLVQGGDRANWDAGHRI 542

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI-DYHQTQQAYFNAKMRLF 234
           L ++ V     E  S  +    L   +   G  TN    DH+ DY+   +      +R  
Sbjct: 543 LMNRAVEAAVFENDSGAILSEGLVYDRCQVGVVTNFDTPDHMGDYYVEDEDRMYNVLRTQ 602

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY------------QGK---FIHL 279
            +++ K   A++ A D   + V++ A  +   V+  G             +GK   F+  
Sbjct: 603 IDVVLKNGAAVLNARD---ERVVEMAELSDGDVIFFGLSADLPAIVAHRAKGKRAVFVRD 659

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            KV       +  ++ +       +     FQV N L A     A+GI + L+   +   
Sbjct: 660 GKVVLTTGNSETPLT-DVAAIPVTYAGRVSFQVENVLAAVATGWALGISNDLIRAGIVTF 718

Query: 340 HV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
            V    VPGRF     N  G  + VD AH + +LE +   +    + R ++V+G G  R 
Sbjct: 719 DVGQVDVPGRFTLFERN--GATVIVDDAHNAPALEALATALDRFPAERRMIVYGAGVQRR 776

Query: 396 QGKRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIEKGNRIE 447
                  GK+     D   + +D       P +E    ++  +  G  +   I++G R +
Sbjct: 777 DEDMVRQGKVIGATFDRVFLCEDRSVKGALPDAEARALLKQGLYEGRRVTKIIDEGTRQD 836

Query: 448 AIRTAIEMLNKQDVLVV 464
           AI TA+  L   D+LV+
Sbjct: 837 AIETALGQLVAGDLLVL 853


>gi|294628851|ref|ZP_06707411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
 gi|292832184|gb|EFF90533.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
          Length = 473

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 37/213 (17%)

Query: 64  IAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + +GAE +V +  +      F A  R+  P+             A RL G      LAVT
Sbjct: 70  LPEGAELVVTAPGWKPDKPLFQAAGRAGVPVW-------GDVELAWRLRGPDAAPWLAVT 122

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GK++    +  I + +GL +  +G                   + L  A+  L  + 
Sbjct: 123 GTNGKTTTVQMLAAILKAAGLRTAAVGNIG----------------VSLLDAV--LGEEK 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E      
Sbjct: 165 YDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYE----GN 218

Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY 272
             A +Y  AD A    V       GCR  +VG+
Sbjct: 219 RVACVYNVADKATEDLVRAADVEEGCR--AVGF 249


>gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
 gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
          Length = 455

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR + AG +FVA+ G + DGH ++    A+GA A +V    +  D         P 
Sbjct: 28  VSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVADVDL--------PQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           L V + R  L    +       + ++A+TG+SGK++V   +  I +  GL
Sbjct: 80  LQVADCRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGL 129


>gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
 gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
          Length = 455

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR + AG +FVA+ G + D H F+PQ   +   AIV   A ++ D         P 
Sbjct: 26  VSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNVAAIV---AETVPD-----GLTVPA 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           L+V +TR  L   A     +    ++ VTG++GK++V   +  I +
Sbjct: 78  LIVQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEMIAAILE 123


>gi|89099774|ref|ZP_01172647.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
 gi|89085521|gb|EAR64649.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
          Length = 695

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 134/333 (40%), Gaps = 26/333 (7%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF+SR     P  ++AVTGT+GK++ +  V+   ++ G +   +G TS+   +  +  + 
Sbjct: 293 LFSSREEAAIP--VIAVTGTNGKTTTSRLVKHFIEKEGTT---VGLTSSDGVYVGEQCID 347

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T        A   LS   V    +E++  G+ +  L       G  TN+  DH+     +
Sbjct: 348 TGDCSGPISARKILSHPKVDIAVLESARGGILREGLAFRHCDIGIVTNVSEDHLGLDGIE 407

Query: 224 Q-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-------SVGYQGK 275
             A      RL  E++ +    I+ ADD    E +K A     +V+       S G Q  
Sbjct: 408 DFAQLVKLKRLIPEVVIEGGYCILNADDP---ETLKMASYTKGKVIYTSLNEESEGSQRA 464

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSAL 331
               + +  + +  Q+  +  G   +FL     P+    +  + +      +A      +
Sbjct: 465 LEKGEPLWYLDSMGQIVYAEAGIKAEFLPAADVPVTINGRAKHNIANLLQALAAAAAQGV 524

Query: 332 VLEHLEK--LHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            LE L++  L   P     R  F     +G  I +DYAH +  L  +        + R+I
Sbjct: 525 SLETLKEKALSFTPDSRNSRGRFNAFLVQGREIIIDYAHNAAGLSAVFGTAADTKNKRLI 584

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +    GDR       M +I+   +D+ I+ +D
Sbjct: 585 TILSAPGDRSDSDIARMAEISAGYSDLIIIKED 617


>gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 464

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S+D+R      +F A+ G   D H ++  A+ QG+ A+VV     +         +
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P +VV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+
Sbjct: 76  VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|260462088|ref|ZP_05810332.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031948|gb|EEW33215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           opportunistum WSM2075]
          Length = 466

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 40/242 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            + +TGT+GKS+  +    I + +G  + Q+G     +    D     P P         
Sbjct: 116 FIGITGTNGKSTTTALTAHILKSAGRDT-QMGGNIGRAVMTLD----PPKPD-------- 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  H  VE SS+ +D      I   AG   NL  DH+D H T Q Y + K    E 
Sbjct: 163 ------RHYVVECSSYQIDL--APSINPTAGILLNLTPDHLDRHGTMQHYASIK----ER 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHNK 288
           L+     AII  DD++  ++ +R   AG +V+ +        GY     +L +  A+H +
Sbjct: 211 LVAGSETAIIGIDDSWCAQIAERLERAGRQVIRISKRLPLTDGYFADGSNLME--AVHGR 268

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                 +EG     +  L G+    NAL A   C+ +G++   +   LE    +  R E 
Sbjct: 269 YSRVAFLEG-----IGSLRGQHNAQNALAAVAACLRVGLELGEIQSGLESFPGLAHRMEQ 323

Query: 349 VG 350
           VG
Sbjct: 324 VG 325


>gi|218753875|ref|ZP_03532671.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           GM 1503]
 gi|289762314|ref|ZP_06521692.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
 gi|289709820|gb|EFD73836.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
          Length = 495

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +AY        E ++P  +  ++  DD     + +RA   G RVL
Sbjct: 189 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 247

Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             G             +Q    G   H++    +   Q   +            +PG   
Sbjct: 248 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 299

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             NAL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    
Sbjct: 300 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 359

Query: 369 LEMILKNIRTI----TSGRIIVVF 388
           +   L   R +      GR +VVF
Sbjct: 360 ISATLAAARMVLEQGDGGRCMVVF 383


>gi|160872723|ref|ZP_02062855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
 gi|159121522|gb|EDP46860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
          Length = 441

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 39/287 (13%)

Query: 109 LYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           L+ +H    I+A+TG++ K +V S + ++ QR+ L+   +     I   A D  L  P P
Sbjct: 93  LFAQHARAPIIAITGSNAKGTVTSLIGKMIQRAHLN---VAVGGNIGKPALD-LLNEPVP 148

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
            +                 +E SS  L+       KL   S  N+  DH+D H+T  AY 
Sbjct: 149 DFYV---------------LEISSFQLETTYSLRPKL--ASILNISPDHLDRHKTLTAYI 191

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           NAK R++ +       A+   DD  +    +       +++S G      H  +   ++N
Sbjct: 192 NAKQRIYHQ----ADIALWNRDDLNTFPQARTK-----KIISFGLTTTTPHAHEF-YLYN 241

Query: 288 KQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             Q     +G D     D LF + G     NA+ A  +  AIG+ +  +L  L +   +P
Sbjct: 242 SHQKNFIAKGHDRLLPVDALF-IQGRHNWANAIAALTIGHAIGLPTKAMLTALCEFKGLP 300

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFG 389
            R ++V    +G   Y D   T+    +  L  +    SG+II++ G
Sbjct: 301 HRCQWV-KEFKGVTWYNDSKATNVGATLAALNGLGPSISGKIILIAG 346


>gi|124515887|gb|EAY57396.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum rubarum]
          Length = 464

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 110/282 (39%), Gaps = 35/282 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR 266
           TN+ ++H+DY+Q+    F+     FE  L   P E  A+   DD     ++  + NA   
Sbjct: 180 TNVDQEHLDYYQS----FDQLKAAFERFLTSVPPEGLAVACLDDPELSNILP-SLNAPHW 234

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAI 325
                     +    V A       ++ + GKD   F+  +PG   V NAL    +    
Sbjct: 235 TYGFSPAADVVG-SDVSAEGLSTSFSVRLRGKDIGTFVLNVPGVHNVLNALATIAVAHHF 293

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+++    E LE+   V  RF  VG    G RI  DY H    + + L   R     R +
Sbjct: 294 GLEAECAREALERFRGVGRRFTQVGEEG-GIRIVDDYGHHPTEIGVTLAAARQAYPDRRL 352

Query: 386 VVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           VV      R    R ++ +   A  LAD+ ++ +     E P       I GI G   F 
Sbjct: 353 VV-AFQPHRFSRTRDLLSRFASAFQLADVLVLGEIYGAGESP-------IAGITGRRLFD 404

Query: 441 E-----------KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           E            G++ E I   + +L   D+L+  G G  T
Sbjct: 405 EIRTSFENEAYFAGDQSEMISRLMTILKPGDLLITMGAGDVT 446


>gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Sinorhizobium meliloti 1021]
 gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
 gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti 1021]
 gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
          Length = 477

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAALLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VVD+  + +         +    I+AVTG+ GK++    
Sbjct: 69  VSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSG 141
           ++ +    G
Sbjct: 125 LRHVLSPLG 133


>gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 469

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 57/377 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS+D+R ++ G IF A+ G + D H F+ QA   GA  +VVS        +A + + 
Sbjct: 26  LSSVSTDTRRLKKGEIFFALSGERHDAHNFLAQAAGAGAGCLVVSR-------TADLPAG 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L V+NT   L   A+         ++AVTG++GK++       I       S ++  
Sbjct: 79  VPVLAVENTLAALQALAAFNRKSCGARVVAVTGSTGKTTTKDMTASIL------STRLRT 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA-- 206
             +  +F  +N +  P        L+ L       ++ VE +  G  +  +D +  IA  
Sbjct: 133 LKSEGNF--NNEIGLP--------LTLLRLDETCEIAVVEMAMRGAGE--IDALCRIAKP 180

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++   T      AK  + E  +P    A++ A+  + +    R     
Sbjct: 181 DCAVITNIGEAHLELLGTVSNIAAAKGEVLEH-IPAGGFALLNAEAPFIRREAGR----- 234

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK----------QQVTISVEGKDFDFLFPLPGEFQVYN 314
           CR       GK I+    C    +           +  + ++G+  +F  P+PG   V N
Sbjct: 235 CR-------GKVIYYGIDCPADIRAANIRPEGRGSRFEVILDGERREFFLPVPGRHNVMN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           AL A G+   +G+    V   L  + +   R E +   ++  RI  D Y     S +  L
Sbjct: 288 ALAAIGVARELGLTWEEVARGLAAVTLTGMRLEII--EAKNLRIINDAYNANPASAKAAL 345

Query: 374 KNIRTITSG-RIIVVFG 389
           + ++ +  G R + V G
Sbjct: 346 QVLKEMAGGRRAVAVLG 362


>gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
 gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
          Length = 822

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 152/372 (40%), Gaps = 50/372 (13%)

Query: 29  KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++  + +DSR +      +F A+   + DGH +IP+   +G  + VVS     +D ++  
Sbjct: 23  EVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRL--PEDMTSCP 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +N   L V +  K L   A R        ++ +TG++GK+ V  ++ Q+          
Sbjct: 81  DAN--FLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQL---------- 128

Query: 147 IGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           + P    T S  + ++++  P  ++    L+  S  G+    +  S  G  +     I+ 
Sbjct: 129 LSPERRVTRSPRSYNSQIGVPLSVW---NLNEKSEVGLFEAGI--SEPGEMEALQSVIQP 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FT LG  H +   + +     K++LF     K++  ++Y         M  A  AG
Sbjct: 184 TIGVFTCLGDAHQENFTSYEQKCMEKLKLF-----KDAKVLVYD--------MDDACVAG 230

Query: 265 CRVLSVGYQGKFIHLKK--------VCAIHNKQQVTIS---VEGKDFDFLFPLPGEFQVY 313
           C V    ++G++    +        + ++  ++  T+     +GK+     P   E  + 
Sbjct: 231 C-VNRSAFKGEYFAWSRQQRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLA 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N++    +C+ +G+    +   +  L  V  R E     S    I   Y    NSL++ L
Sbjct: 290 NSVSCLAVCLHLGMSPETIAARMAVLEPVAMRLEVKEGRSGCTLINDSYNSDYNSLDIAL 349

Query: 374 K--NIRTITSGR 383
              N R   +GR
Sbjct: 350 DFMNRRPDCAGR 361


>gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 464

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S+D+R      +F A+ G   D H ++  A+ QG+ A+VV     +         +
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P +VV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+
Sbjct: 76  VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMAAKILQK 125


>gi|294677022|ref|YP_003577637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
 gi|294475842|gb|ADE85230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
          Length = 466

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 109/280 (38%), Gaps = 44/280 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GKS+  + +  I + +G ++   G    I     D  L  P    +       
Sbjct: 123 VCITGSNGKSTTTALIHHILKHAGRATQMAG---NIGRGVLD--LDPPEDGEV------- 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E 
Sbjct: 171 -------VVLELSSYQTDLAR--ALTPDIAVFTNLSPDHMDRHSGMGGYFAAKRRLFAEG 221

Query: 238 LPKESPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNK 288
            P    A+I  D+       ++  M    +   RV S    G F       K   A   K
Sbjct: 222 APDR--AVIGVDEPEGVYLANQMAMGATDDRVIRVSSAKKLGDFGWSVFARKGFLAEWRK 279

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +   S+   D   +  LPG     NA  A   C ++G+   L+ E       +P R + 
Sbjct: 280 GRQVASI---DLRGVKALPGAHNHQNACAAYAACRSLGLAPKLIEEAFHSFGGLPHRSQT 336

Query: 349 VGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
           +    RG R YV+ +  +N      +LE    NIR I  G
Sbjct: 337 I-AEKRGVR-YVNDSKATNVDSAAKALEA-FSNIRWIVGG 373


>gi|289574835|ref|ZP_06455062.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
 gi|289539266|gb|EFD43844.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
          Length = 437

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +AY        E ++P  +  ++  DD     + +RA   G RVL
Sbjct: 131 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 189

Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             G             +Q    G   H++    +   Q   +            +PG   
Sbjct: 190 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 241

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             NAL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    
Sbjct: 242 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 301

Query: 369 LEMILKNIRTI----TSGRIIVVF 388
           +   L   R +      GR +VVF
Sbjct: 302 ISATLAAARMVLEQGDGGRCMVVF 325


>gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 466

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 133/357 (37%), Gaps = 51/357 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR I  G +FV + G + DGH F    +  GA A +    ++L   +      
Sbjct: 27  VQGVVTDSRQITKGCLFVPLAGERFDGHDFASDCLQAGAGACL----WALSKGTPP---- 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142
            P ++VD+T   L   A     +    ++ +TG++GK++    V        ++ +  G 
Sbjct: 79  GPAVLVDDTLIALQALAKSYLTETGAKVVGITGSNGKTTTKDLVYALLSTTYKVHKTKGN 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  IG   TI +  +D  +         +  +  LS  G    +V              
Sbjct: 139 FNNHIGLPLTILAMPEDTEIAVLEMGMSGRGEIELLSKIGEPETAV-------------- 184

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   TN+G  H+    +++    AK+ +   + P      IY  D   + ++ +  
Sbjct: 185 -------VTNIGESHLLQLGSREEIARAKLEILAGMKP--GGLFIYNGD---EPLIPKVL 232

Query: 262 NAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYN 314
                V   G Q     L+          +    Q   +  G + D L  PL GE  V N
Sbjct: 233 AEPSTVKPEGLQTATFGLRPENDQYPTGILFTDHQTLFTPHGSEGDPLELPLLGEHNVSN 292

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           AL A  +    G+  A + E   K+ +   R E +    R G   ++ A+ ++   M
Sbjct: 293 ALAAITVARHYGVGEAAIREGFSKVELTGMRIEVI--TGRSGITILNDAYNASPTSM 347


>gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis
           glossinidius str. 'morsitans']
 gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 455

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 154/365 (42%), Gaps = 34/365 (9%)

Query: 30  INEVSSDSRHIQAG--WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I  V +DSR   A    +FVA+ G + D H F  QA+A GA A++V+    L        
Sbjct: 24  ILSVVTDSRAPSAAESSVFVALKGEQFDAHDFAEQAVAAGAAALLVNRRLPL-------- 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P LVV +TR+ L    + +  + P  ++A+TG+SGK+SV      I ++ G      
Sbjct: 76  -DVPQLVVADTRRALGQLGAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGRV---- 130

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +T  +F  D  +    P+ L   L    +     + + A+  G      D ++    
Sbjct: 131 --LATEGNFNNDIGV----PLTL---LRLTPAHDFAVIELGANHLGEIAWTTDLVRPETA 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNAG 264
              NL   H+    +      AK  +F   LP     I+ AD     + ++V+   H A 
Sbjct: 182 LVNNLSAAHLAGFGSLSGVAQAKGEIFAG-LPANGCGILNADSHDWPHWQQVL--GHKAV 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R       G       + +     + T+     +     PLPG+  V NAL A  L ++
Sbjct: 239 WRFAVQAAGGVDFFASDIESDQQGVRFTLHSPLDECPVRLPLPGKHNVANALAACALALS 298

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
           +G +   V   L +L  VPGR   +   +  GR+ +D ++ +N  S+    + +  +   
Sbjct: 299 VGAELPAVAAGLAQLQAVPGRLFPIALGA--GRLMLDDSYNANVGSMTAAAQVLAEMPGY 356

Query: 383 RIIVV 387
           R++VV
Sbjct: 357 RVMVV 361


>gi|15609289|ref|NP_216668.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Rv]
 gi|15841644|ref|NP_336681.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31793332|ref|NP_855825.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis
           AF2122/97]
 gi|121638034|ref|YP_978258.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661968|ref|YP_001283491.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|148823361|ref|YP_001288115.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           F11]
 gi|167967845|ref|ZP_02550122.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|215403539|ref|ZP_03415720.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           02_1987]
 gi|215431082|ref|ZP_03429001.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           EAS054]
 gi|215446382|ref|ZP_03433134.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T85]
 gi|224990528|ref|YP_002645215.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798783|ref|YP_003031784.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232311|ref|ZP_04925638.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|254364957|ref|ZP_04981003.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551190|ref|ZP_05141637.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289745425|ref|ZP_06504803.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289754262|ref|ZP_06513640.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289758272|ref|ZP_06517650.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|294993538|ref|ZP_06799229.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           210]
 gi|297634741|ref|ZP_06952521.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731730|ref|ZP_06960848.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN R506]
 gi|306776402|ref|ZP_07414739.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|306780180|ref|ZP_07418517.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|306784925|ref|ZP_07423247.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|306789292|ref|ZP_07427614.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|306793620|ref|ZP_07431922.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|306803890|ref|ZP_07440558.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|306808462|ref|ZP_07445130.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|306968286|ref|ZP_07480947.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|306972515|ref|ZP_07485176.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|307080223|ref|ZP_07489393.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|307084805|ref|ZP_07493918.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|313659065|ref|ZP_07815945.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037857|sp|P65473|MURC_MYCBO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041507|sp|P65472|MURC_MYCTU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224704|sp|A1KKJ5|MURC_MYCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224708|sp|A5U4H9|MURC_MYCTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766013|sp|C1AQ68|MURC_MYCBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2104326|emb|CAB08641.1| Probable UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Rv]
 gi|13881896|gb|AAK46495.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31618924|emb|CAD97029.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis
           AF2122/97]
 gi|121493682|emb|CAL72157.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124601370|gb|EAY60380.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|134150471|gb|EBA42516.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506120|gb|ABQ73929.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Ra]
 gi|148721888|gb|ABR06513.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis F11]
 gi|224773641|dbj|BAH26447.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320286|gb|ACT24889.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|289685953|gb|EFD53441.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289694849|gb|EFD62278.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289713836|gb|EFD77848.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|308215190|gb|EFO74589.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|308326949|gb|EFP15800.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|308330384|gb|EFP19235.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|308334218|gb|EFP23069.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|308338014|gb|EFP26865.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|308345192|gb|EFP34043.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|308349498|gb|EFP38349.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|308354127|gb|EFP42978.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|308358069|gb|EFP46920.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|308362006|gb|EFP50857.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|308365639|gb|EFP54490.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|323719307|gb|EGB28449.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis CDC1551A]
 gi|326903769|gb|EGE50702.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis W-148]
 gi|328458546|gb|AEB03969.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 4207]
          Length = 494

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +AY        E ++P  +  ++  DD     + +RA   G RVL
Sbjct: 188 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 246

Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             G             +Q    G   H++    +   Q   +            +PG   
Sbjct: 247 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 298

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             NAL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    
Sbjct: 299 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 358

Query: 369 LEMILKNIRTI----TSGRIIVVF 388
           +   L   R +      GR +VVF
Sbjct: 359 ISATLAAARMVLEQGDGGRCMVVF 382


>gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 813

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 39/346 (11%)

Query: 36  DSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPI 92
           DSR I  +   +F A  G ++DGHL+I  A  +G    V+      +D    ++  +  I
Sbjct: 31  DSRKIAHEKLGVFFAFTG-RQDGHLYIQDAYNKGVRNFVLE-----KDAEQEVQMPDANI 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V N+   L   A     +    ++ +TG++GK+ V  ++ Q+          + P   
Sbjct: 85  LWVANSWTALQSLAKHNRSQFQGPVIGITGSNGKTIVKEWLFQL----------MSPEYK 134

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
           I    +    +  S + +A +L  LS+Q    +     SH  +  RL+  IK   G  TN
Sbjct: 135 IYRSPK----SYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKPTYGVLTN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H     ++      K+RLF     K++  +IY   A   E ++  +    R LS G
Sbjct: 191 IGIAHQQGFASKLEKTEEKLRLF-----KDAETLIYP--AKYLEAVQIPYKP--RKLSWG 241

Query: 272 YQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +    +  +V +I   +     VT+   GK F    P      + NA+    + +  G 
Sbjct: 242 EEED--NQLEVYSIRKPEDGETYVTLYYGGKTFGISVPFTDSAAMENAITCVAVMLRFGY 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           D+AL+ E +  L  V  R E     +    I   Y++   SL++ L
Sbjct: 300 DTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIAL 345


>gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 472

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 162/365 (44%), Gaps = 35/365 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   +  +F+AIVG + DGH F+ QAI  G   IV+   ++ + FS    +   +
Sbjct: 32  IAIDSRTAMSSDLFIAIVGERLDGHDFVRQAINGGVRGIVIDKKHA-ESFSYARMAKLEL 90

Query: 93  --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +VV +T + L   A++       +I A+TG++GK++       +      + +++   
Sbjct: 91  GCVVVPDTTEALGKIANQYRKGFGVSIAAITGSNGKTTTKELTAAVLA----AKYRVHK- 145

Query: 151 STISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGI-KLIAG 207
              S+   +N++  P + + L  A  +   + G+ H    A        RL  I +   G
Sbjct: 146 ---STGNHNNQIGLPFTLLGLGPAHQWAVVELGMNHFGEIA--------RLTQICEPDIG 194

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H++   + +    AK  L E +  K   A++  DD     +  +    G  V
Sbjct: 195 VITNVGPGHLEGLGSVEGVLAAKGELLENMANK--TAVLNLDDKLVSTLADKYQ--GETV 250

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L        +  K +   +   + T+ ++ ++      L G+  V+NAL AA + ++ G+
Sbjct: 251 LFGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLHGDCMVHNALAAAAVGVSAGV 310

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLE-----MILKNIRTITS 381
               + + LE ++ V GR   V   S G  +  +D A+ +N        M L+ +   + 
Sbjct: 311 SPKEIRDALETVNPVKGRQNVV---SLGNDVQLIDDAYNANPASFAAAVMTLQALAKASK 367

Query: 382 GRIIV 386
           GR+I+
Sbjct: 368 GRMIM 372


>gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
 gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
          Length = 468

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 13/108 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR ++ G +FV ++G + D H F  Q +  GA A+V +    L           PI
Sbjct: 37  IQTDSRLVEKGDLFVCLIGERFDAHDFAGQVMKSGAAALVTNRVLDL-----------PI 85

Query: 93  --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
              VV++TR  L   AS    +    +LAV G++GK++    +  IC+
Sbjct: 86  HQFVVNDTRLALGALASAWRQQFDLKVLAVVGSNGKTTSKEMLGGICK 133


>gi|215411869|ref|ZP_03420653.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298525647|ref|ZP_07013056.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298495441|gb|EFI30735.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 494

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +AY        E ++P  +  ++  DD     + +RA   G RVL
Sbjct: 188 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 246

Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             G             +Q    G   H++    +   Q   +            +PG   
Sbjct: 247 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 298

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             NAL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    
Sbjct: 299 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 358

Query: 369 LEMILKNIRTI----TSGRIIVVF 388
           +   L   R +      GR +VVF
Sbjct: 359 ISATLAAARMVLEQGDGGRCMVVF 382


>gi|260893411|ref|YP_003239508.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
 gi|260865552|gb|ACX52658.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
          Length = 461

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 132/333 (39%), Gaps = 41/333 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P  +A   E +VVSSA         I+ + P L+    R+   +    L      +   +
Sbjct: 61  PANLAPETELVVVSSA---------IKPDNPELLAAREREIPVIRRGELLAWVMRDYRGI 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV G  GK++  + V  +    GL      PT  +  +          P+          
Sbjct: 112 AVAGAHGKTTTTAMVANVLLAGGLD-----PTVLVGGY---------WPLIEGNCRLGKG 157

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S  VT      +S  L       +  +    TN+  DH+DY+   +A   A  R F   +
Sbjct: 158 SYFVTEADESDASFLL-------LTPMLAVVTNIENDHLDYYGNLEALLGA-FRTFLARI 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
                A++  D    ++++   +     V++ G + G    LKKV    +     +   G
Sbjct: 210 EPPGTAVVCLDSPLVRQLIGVLN---IPVITYGMEEGADYILKKVELSGSSSSALLYYRG 266

Query: 298 KDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    L   LPG+  + NA  A  +   +G+  A+  + L +   V  RFEF+G    GG
Sbjct: 267 RLLGQLKLNLPGKHNLLNAAAAVAVGAYLGVPFAVASQALAEFRSVRRRFEFLG--EAGG 324

Query: 357 RIYV-DYAHTSNSLEMILKNIRTITSGRIIVVF 388
            + V DYAH    ++  ++  R I  GR++VVF
Sbjct: 325 VMVVDDYAHHPTEVQATIEAARQIHRGRLVVVF 357


>gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 464

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S+D+R      +F A+ G   D H ++  A+ QG+ A+VV     +         +
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P +VV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+
Sbjct: 76  VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|260201266|ref|ZP_05768757.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289443657|ref|ZP_06433401.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289416576|gb|EFD13816.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
          Length = 494

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +AY        E ++P  +  ++  DD     + +RA   G RVL
Sbjct: 188 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 246

Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             G             +Q    G   H++    +   Q   +            +PG   
Sbjct: 247 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 298

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             NAL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    
Sbjct: 299 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 358

Query: 369 LEMILKNIRTI----TSGRIIVVF 388
           +   L   R +      GR +VVF
Sbjct: 359 ISATLAAARMVLEQGDGGRCMVVF 382


>gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
 gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
          Length = 466

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           + ++
Sbjct: 23  VSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQALEKGAGAALVSR------VPEGVPAD 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P+L+VD+ +  L         +    ++AVTG+ GK+S    + ++    G
Sbjct: 76  APLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKTSTKEMLARMLSDQG 127


>gi|78484929|ref|YP_390854.1| UDP-N-acetylmuramate--alanine ligase [Thiomicrospira crunogena
           XCL-2]
 gi|109892753|sp|Q31I43|MURC_THICR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78363215|gb|ABB41180.1| UDP-N-acetylmuramate--L-alanine ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 461

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 144/370 (38%), Gaps = 45/370 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + ++ +VVS+A +  +        + I V+        L   R +G      +A+ GT G
Sbjct: 63  KNSDVVVVSTAIAKDNPEVCFAKESRIPVIPRAAMLAELMRMR-FG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I    GL  +F IG    ++ F  + RL + S   +A+A    S     H
Sbjct: 116 KTTTTSLASAILTEGGLDPTFVIG--GKLNQFDSNARLGS-SQYLIAEADE--SDASFLH 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +S   S                   TN+  DH++ +Q   A        F   LP    A
Sbjct: 171 LSPMMSV-----------------VTNIDEDHMETYQGDYANLEQTFIEFIHRLPFYGVA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FD 301
           I+  DD   + ++ +      ++ + G+  +   ++    +H    +  +V+  D   F 
Sbjct: 214 IVCIDDQNIQNMLPKLSR---KIRTYGF-SESADIRATEVLHQGLSMHFNVKANDLPEFS 269

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---I 358
            +   PG+  V NAL A  + + + +    + + L     V  RFE   + S G +   +
Sbjct: 270 VVLNQPGKHNVLNALAAITVALELDVSIESIQKALAGFGGVGRRFEVYPSRSIGHKNVTL 329

Query: 359 YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415
             DY H    LE  L   R      R+++VF     R    R +  +   AL  AD+ ++
Sbjct: 330 VDDYGHHPTELEATLSTARMAFPEKRLVLVFQP--HRYSRTRDLFDEFVQALQHADLLVL 387

Query: 416 TDDNPRSEDP 425
            D  P  E P
Sbjct: 388 LDVYPAGEAP 397


>gi|329901110|ref|ZP_08272726.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549209|gb|EGF33797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 501

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 148/361 (40%), Gaps = 64/361 (17%)

Query: 102 LSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           + LFA  L     E      ++A+TGT+GK++V S    +C+R+GLS    G  S     
Sbjct: 105 IELFAQALAALREERGYAPKLIAITGTNGKTTVTSLTGLLCERAGLSVQVAGNIS----- 159

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   PS + + +    L S  +    V E SS  L  H    ++    +  N+ +D
Sbjct: 160 --------PSALDVLR--QCLDSDSLPQAWVLELSSFQL--HTTHSLQADVATVLNITQD 207

Query: 216 HIDYHQTQQAYFNAKMRLFE----ELLPKESPAIIY------------ADDAYSKEVMKR 259
           H+D+H     Y   K R+F      +L ++  A++             +D+A S +    
Sbjct: 208 HLDWHGDMACYVADKARIFGTDTIRVLNRDDAAVMQLASTGTAPVTFGSDEALSPDCFGL 267

Query: 260 AHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            +  G + L+V  + +           +V A+ +K+ +              + G+    
Sbjct: 268 LNENGMQWLAVAIEAEAEKKPTKRGPAEVRAVSSKRLMPADA--------LKIRGQHNAL 319

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI- 372
           NAL A  LC AIG+  A +L  L   H  P R E V T +  G  Y D +  +N    + 
Sbjct: 320 NALAALALCRAIGLPLAPLLHGLRDYHGEPHRVELVTTLA--GVTYFDDSKGTNVGATVA 377

Query: 373 -LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L  +     G+++++ G G  + Q   P+   +A  +  + ++       +D + IRA 
Sbjct: 378 ALTGLGLQQQGKLVLIAG-GDGKGQDFTPLAAPVARHVRAVLLI------GKDADAIRAA 430

Query: 432 I 432
           +
Sbjct: 431 L 431


>gi|319782846|ref|YP_004142322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317168734|gb|ADV12272.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 466

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 99/242 (40%), Gaps = 40/242 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TGT+GKS+  +    I + +G  + Q+G     +    D     P P         
Sbjct: 116 FIAITGTNGKSTTTALTAHILKAAGRDA-QMGGNIGRAVMTLD----PPEPD-------- 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  H  VE SS+ +D      I   AG   NL  DH+D H T Q Y   K    E 
Sbjct: 163 ------RHYVVECSSYQIDL--APSINPTAGILLNLTPDHLDRHGTMQHYAAIK----ER 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHNK 288
           L+     AI+  DD++  ++ +R   AG  V+ +        GY     +L +  A+H +
Sbjct: 211 LVAGSETAIVGIDDSWCAQIAERLERAGRHVIRISKRLPLTDGYFADGSNLME--AVHGR 268

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                 +EG     +  L G+    NAL A   C+ IG++   +   LE    +  R E 
Sbjct: 269 YSRVAFLEG-----IGSLRGQHNAQNALAAVAACLKIGLELGEIQSGLESFPGLAHRMEQ 323

Query: 349 VG 350
           VG
Sbjct: 324 VG 325


>gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 464

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S+D+R      +F A+ G   D H ++  A+ QG+ A+VV     +         +
Sbjct: 25  VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P +VV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+
Sbjct: 76  VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125


>gi|289554061|ref|ZP_06443271.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
 gi|289438693|gb|EFD21186.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
          Length = 438

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +AY        E ++P  +  ++  DD     + +RA   G RVL
Sbjct: 132 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 190

Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             G             +Q    G   H++    +   Q   +            +PG   
Sbjct: 191 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 242

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             NAL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    
Sbjct: 243 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 302

Query: 369 LEMILKNIRTI----TSGRIIVVF 388
           +   L   R +      GR +VVF
Sbjct: 303 ISATLAAARMVLEQGDGGRCMVVF 326


>gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
 gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
          Length = 130

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+    A+GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117


>gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+DSR I  G +F+A+ G + DGH ++ +  A+GA A++V    +         +  
Sbjct: 17  SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVEREVA--------DAPL 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           P L+V +TR  L    +    K    + A+TG+SGK++V   +  I +
Sbjct: 69  PQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILR 116


>gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
 gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
          Length = 462

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 39/379 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +   +R   I  VS D+R +    +F+ + G + DGH +I QAI QGA+A+     +  Q
Sbjct: 18  YQTDYRFDMIESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQGAKAVF----WGRQ 72

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ------ 134
           D +        I V D    F  L    L    P N++ +TG+SGK++            
Sbjct: 73  DQTPP-EGICAIWVDDPLEAFQELAKWYLEKIQP-NVIGITGSSGKTTTKDMTAAVLASR 130

Query: 135 -QICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            ++ +  G  +  IG   TI    +D  +L     +     + +LS      V+      
Sbjct: 131 YRVYKTQGNFNNDIGLPQTILDMPEDTEQLVLEMGMSDFGEIEFLSKLAKPSVA------ 184

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                          + T +G  H++   ++     AK+ + + L  K S      +   
Sbjct: 185 ---------------AITLIGESHMENLGSRAGIAKAKLEILKGLREKGSIIFPANEPLL 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +++ +       +VL  G     +   +   +     +   V+        P+ G + V
Sbjct: 230 EQQLEEMQAEEHFKVLPFGEGSSSVIQAENIQLFEDHTIFDLVKPSKQSVQLPVLGAYNV 289

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
            NAL A  + +  G+     +E +++  +   R ++V     G +I  D Y  +  +++ 
Sbjct: 290 NNALAALQVGLECGVPLEQAIEAIQQFELTKNRTQWV-DGIHGSKILNDAYNASPIAMKS 348

Query: 372 ILKNIRTI-TSGRIIVVFG 389
           ++++  ++ T GR IVV G
Sbjct: 349 VIQSFTSVATKGRKIVVLG 367


>gi|168209731|ref|ZP_02635356.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
 gi|170712111|gb|EDT24293.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
          Length = 457

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 129/338 (38%), Gaps = 46/338 (13%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116
           +GA+  +  S  +LQD     ++A I S+ P ++       + +    F  ++   H  N
Sbjct: 54  EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173
           + AV GT GK++  S +  +   + L      PT  +         N     S  ++ +A
Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                   Q  L     + G   N+  DH+D+++    +     + 
Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P +   I  ADD    EV++ A    C VL+       I  + +   + K   T 
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYEINNGDIQARNI-EFNEKGCATF 263

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V   E K       +PG   V N+L A  L     I++  ++  L        RFE+ G
Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T +    +  DYAH    ++  L   + +   +I+ VF
Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360


>gi|269956082|ref|YP_003325871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304763|gb|ACZ30313.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 72/168 (42%), Gaps = 31/168 (18%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPS 166
           R  G  P   LAVTGT+GK++    +  I   +GL +  +G   T +   A D  L    
Sbjct: 110 RAAGGGPAPWLAVTGTNGKTTTVEMLASILSAAGLRTRAVGNVGTPLIEAALDPDLDV-- 167

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                             ++VE SS  L  H    + + AG+  NL  DH+D+H T  AY
Sbjct: 168 ------------------LAVELSSFQL--HFAHTVAVQAGAILNLAEDHLDWHGTMAAY 207

Query: 227 FNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY 272
              K R++E    +   A +Y  AD A   EV +     G R  +VG+
Sbjct: 208 GADKGRIYE----RAERACVYNAADGATEHEVREADVADGAR--AVGF 249


>gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 318

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 13/115 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R I+ G +F+A+ G   DGH F+ +A  +GA A +VS     + F        P
Sbjct: 28  NISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAIAAIVSEG-KYKSF--------P 78

Query: 92  ILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLS 143
           +++V +T K L   AS  Y ++      ++AVTG+ GK++    +  +  + G+S
Sbjct: 79  LIIVQDTLKALHDMAS-YYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVS 132


>gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 464

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S+D+R      +F A+ G   D H ++  A+ QG  A+VV     +         +
Sbjct: 25  VETTSTDTRQAVENGLFFALKGEHFDAHHYLANAVEQGCVAVVVERECEI---------S 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +TR  L   A  L  K     +A+TG+SGK++V     +I Q+  +   ++  
Sbjct: 76  VPQIVVQDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTVCEDEV-- 133

Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              + +F   +N L  P  +         +    G  H+   A +  + Q         A
Sbjct: 134 ---LYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTAITQPD-------A 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRAHNA 263
               N+   H++   + +    AK  ++   L     AI+   +    + KE+ +     
Sbjct: 184 CLVNNVAAAHLEGFGSLEGVAQAKGEIYRG-LKAGGKAIVNQAFYYPQWQKEIGEH---- 238

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQVYN 314
              + S  Y G     +   A    + V + + G  F    P       LP  G   V N
Sbjct: 239 --ELQSFSYTGSD---QDSYADFWAENVELDLSGSHFTLHSPQGEIEINLPYLGAHNVSN 293

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D   +   LE+   V GR   V  N     I   Y    +S++  + 
Sbjct: 294 ALAATSLAMAVGADLNAIKVGLEQRSQVKGRLYPVEVNQHCLLIDDTYNANVDSMKSAVA 353

Query: 375 NIRTITSGRIIVV 387
            ++   + RI  V
Sbjct: 354 VLKNYPAFRIFAV 366


>gi|222086446|ref|YP_002544980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein
           [Agrobacterium radiobacter K84]
 gi|221723894|gb|ACM27050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein
           [Agrobacterium radiobacter K84]
          Length = 470

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I Q SG  +   G   T         LT   P    KA  Y 
Sbjct: 117 IAITGTNGKSTTTALIAHILQSSGRDTQLGGNIGTAI-------LTLDPP----KAERYY 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 166 V--------VECSSYQIDLAPT--LDPSAGILLNLTPDHLDRHGTMQHYADIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     AI+  DD+YS  +  R   AG +V+ +
Sbjct: 212 VAGSGVAIVGVDDSYSSLIADRIERAGAKVIRI 244


>gi|163732135|ref|ZP_02139581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
 gi|161394433|gb|EDQ18756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
          Length = 464

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 31/241 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+ ++ +  I +        +G  +T++       L    P         
Sbjct: 122 VVAVTGSNGKSTTSALIHHILE-------HVGRPATLAGNIGRGVLDIDPP--------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 166 ---HDGEVVVLELSSYQTDLAR--SLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-------GYQGKFIHLKKVCAIHNKQ 289
             P  +   +  D+  S         A  RV+ +       G   +    K   + + K 
Sbjct: 221 GGPDRAIVGVDEDEGLSLAGQLAEGRADDRVIRISVAQKLTGPGWQVFARKGFLSEYRKG 280

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +   S+   D   +  LPG     NA  A  +C ++G+   ++   L     +P R + V
Sbjct: 281 KQIASI---DLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKVIEAALHSFQGLPHRSQLV 337

Query: 350 G 350
           G
Sbjct: 338 G 338


>gi|255007708|ref|ZP_05279834.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis 3_1_12]
          Length = 831

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81
           I+ + +DSR +      +F AI   + +G  +IP    +G    VV+S          + 
Sbjct: 24  IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 83

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              T+      L+V NT K L   + +  G     ++ +TG++GK+ V  ++ Q+     
Sbjct: 84  LKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIGITGSNGKTIVKEWLHQL----- 138

Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                + P   I  S  + ++++  P  ++     S L   G+    +  S  G  +   
Sbjct: 139 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256
           + IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +IY  D    S  V
Sbjct: 189 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 242

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K    A     S+    + +++ +V    +   ++      D  F  P   +  + N+L
Sbjct: 243 GKSMLTAREIAWSMKDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPFIDDASIENSL 302

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                C+ + + +  + E + +L  V  R E
Sbjct: 303 NCLAACLYLMVPADQITERMARLEPVAMRLE 333


>gi|183602454|ref|ZP_02963820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683232|ref|YP_002469615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191192|ref|YP_002968586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196598|ref|YP_002970153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218373|gb|EDT89018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620882|gb|ACL29039.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249584|gb|ACS46524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251152|gb|ACS48091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177305|gb|ADC84551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794185|gb|ADG33720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 516

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 119/537 (22%), Positives = 209/537 (38%), Gaps = 66/537 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQW---------RERKINEVSSDSRHIQAGWIFVAIVG 51
           + LQ    + F E +    I P  W          E     ++ D+R +  G + V   G
Sbjct: 3   LSLQSAARELFAENLLHEIITPHMWTMNAASVENNEVPFTAITYDTRTVTPGSLLVC-KG 61

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
           N      F P+ + Q A  + +++  +  D+SA   ++ P L+V + +K LS+ A   Y 
Sbjct: 62  N------FNPKYLEQ-ANKLGMAAYVATNDYSA--YTDAPGLIVSDDKKALSILAQAYY- 111

Query: 112 KHPENILAVTGTSGKSSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLT 163
            HPE  L + G +G       A +   I   + LS       S++ +        ++ LT
Sbjct: 112 DHPERQLTLIGITGTKGKTTTAYYTHAII--NALSGNTTALFSSVDNCVDGMHYVESDLT 169

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQ 221
           TP  +   + +    + G+ ++ +E SS     +R+        +F N+  DHI    H 
Sbjct: 170 TPESLDAVRMMREAVNNGMKYLVMEVSSQAYKVNRVYDFHFDVAAFLNISPDHISPIEHP 229

Query: 222 TQQAYF--------NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           + + Y         NA M +  E    E    +  +DA     + R   +   +     Q
Sbjct: 230 SFENYLWCKRQIIRNADMLVLGERSDHEQ---LLLEDAE----LNRVPVSTFALADSPAQ 282

Query: 274 GKFIHLKKVCAIHNKQQVTIS--VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGID-- 328
                +   CA  N +       V+G+    L   + G+F   NA  A  +   IG+D  
Sbjct: 283 SDIADV--TCAPTNMEHTAFDYFVDGERLGSLTLAMEGDFNYANAAAALAIAHDIGMDVS 340

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---II 385
               L  L  +  + GR E +  +       VDYAH   S+  +L  +          I 
Sbjct: 341 DPRALASLADVR-ISGRMEEMHDSRSNTLAIVDYAHNFASVNALLDFVEQRYGAEHPHIT 399

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIE 441
           ++ G  G++   +R  + K A D     I+T ++  +E  E+I +E+ + +         
Sbjct: 400 LITGSAGNKAYDRREGIVKAAQDRVQKLILTAEDTDTEPIEQICSEMANNVTNEDLDVQT 459

Query: 442 KGNRIEAIRTAIEMLNKQD----VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +R EA++ A++     D    +L++ GKG E      N       D  IIR +  
Sbjct: 460 ILDRAEAVKHAVDEARAADGGLSILLLIGKGDEQWIKDRNIHTPYEGDSQIIRRLFA 516


>gi|254303960|ref|ZP_04971318.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324152|gb|EDK89402.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 608

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 156/368 (42%), Gaps = 49/368 (13%)

Query: 9   KDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   +
Sbjct: 174 KDFSEILKREKLNDLLFEEFSKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVL 229

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +G  ++V++    ++D          IL V NT   +   A++   K    ++ +TG++
Sbjct: 230 DKGV-SLVIADNTDVKD--------ERILKVSNTIATMQDLATKYRKKLDIQVIGITGSN 280

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    V        L S +     T  ++  +N +  P  +     L+    +    
Sbjct: 281 GKTTTKDIVYS------LLSAKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFVV 327

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  L  E + KE+ 
Sbjct: 328 LEMGMSSLG-EIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELL-EFVNKEN- 384

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y          A   V  +G+     H  +     +K    I ++GK++   
Sbjct: 385 TFVCGDDEYL---------AKLDVNRIGFNDNNNHKIESYEFSDKGSKFI-LDGKEYK-- 432

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   +G+    +   L+++ +   RF+ +     G  IY++ A
Sbjct: 433 ISLLGKHNISNTAIAIELAKKVGLTDEEIQSGLKEIKISNMRFQEIKI---GEDIYINDA 489

Query: 364 HTSNSLEM 371
           + ++   M
Sbjct: 490 YNASPTSM 497


>gi|113866801|ref|YP_725290.1| cyanophycin synthetase [Ralstonia eutropha H16]
 gi|113525577|emb|CAJ91922.1| cyanophycin synthetase [Ralstonia eutropha H16]
          Length = 877

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 145/393 (36%), Gaps = 70/393 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTGT+GK+ VA  V ++ Q   LS    G   +   F    ++ +            
Sbjct: 485 VVGVTGTNGKTVVARLVARLLQ---LSGKHTGLACSDGLFLDRRQVESGDRANWESGHRI 541

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI-DYH-------------- 220
           L ++ V     E  S  +    L   +   G  TN  + DH+ DY+              
Sbjct: 542 LMNRAVEAAVFENDSGSILSEGLAYDRCQVGVVTNFDQPDHLGDYYVEDEDRMYNVLRTQ 601

Query: 221 -----QTQQAYFNAKMRLFEEL------------LPKESPAIIYADDAYSKEVMKRAHNA 263
                +T  A  NA+     E+            L  E PAI+    A  + V  R    
Sbjct: 602 VDVVLETGAAVLNARDERLVEMAGLCDGDVIFFGLTPELPAIVSHRAAGKRAVYLRE--- 658

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G  VL+ G            A+ +   V ++  G+           FQV N L A     
Sbjct: 659 GKIVLATG--------SSETALVDVAAVPLTYAGR---------VAFQVENVLAAVAAGW 701

Query: 324 AIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           A+GI + L+   +    V    VPGRF     N  G  + VD AH + +LE +   +   
Sbjct: 702 ALGISNDLIRAGVVTFDVGQVDVPGRFTLFERN--GATVVVDDAHNAPALEALATALERF 759

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEII 433
            + R +VV+G G  R        G       D   + +D       P +E    ++  + 
Sbjct: 760 PAERRMVVYGAGMQRRDEDLVRQGMALGQHFDRVFLCEDRSVKRALPDAEARALLKQGLY 819

Query: 434 HG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            G  +   I++G R  AI TA+  L   D+LV+
Sbjct: 820 EGRRVTKIIDEGTRASAIETALSQLVPGDLLVL 852


>gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
 gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
          Length = 449

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 22/174 (12%)

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++ E SS  L+   +   K  A +  N+  DH++ H T +AY  AK R+FE  +  E+  
Sbjct: 156 IAAEVSSFQLE--FIKNFKPKAAAILNITPDHLERHHTMEAYVQAKARIFEN-MNFENCI 212

Query: 245 IIYADDAYSKEV--MKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++ ADD Y+ E+  M   H   C + S+      G F+         + +++ IS +G  
Sbjct: 213 LLNADDKYTNELTEMANKHTNVC-LFSIQKNIDNGAFL---------DGEELVISYKGNK 262

Query: 300 FDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +        + G+    NAL A+ L    GI    +   L++   +P R EFV
Sbjct: 263 INICNINELQIKGKQNYANALAASFLAFFSGISLEAIRAALKEFKGLPHRIEFV 316


>gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           coahuilensis m4-4]
          Length = 456

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 155/381 (40%), Gaps = 51/381 (13%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +N +S+F    +++ ++ V  D+R + AG +FV   G   DGH F+   + +GA      
Sbjct: 16  LNDVSLF----KDQLVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDVLEKGA------ 65

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV- 133
            A   +  +       P++VV+++   L   +     +    ++ VTG++GK++    + 
Sbjct: 66  GAAFWEKSAGPAPEGLPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKDILF 125

Query: 134 ------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
                  ++ +  G  +  IG   TI S  +D+ +                        +
Sbjct: 126 ALLSTKYRVHKTEGNYNNHIGLPLTILSLPEDSEVAV----------------------L 163

Query: 188 EASSHGLDQHR-LDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           E    G  + R L  I L  A   TN+G  H+    +++    AK  + E L  K     
Sbjct: 164 EMGMSGFGEIRELTQIALPDAAIITNIGESHLQDLGSREGISKAKFEIVEGL--KSEGLF 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +Y  D     + +R    G    + G +    ++  K+    +    T SV   D +F  
Sbjct: 222 VYNGD--EPLLQERVKGYGGSKETFGRHSSNTMYPTKLAP--SGFGTTFSVNVSDEEFHL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
           P+ GE  V N + A  +    G+    + + L  L +   R E V T ++G  I  D Y 
Sbjct: 278 PILGEHNVMNTMGAMLIAKFFGVGFGDMQKGLSTLKLTGMRLE-VSTGAKGETIINDAYN 336

Query: 364 HTSNSLEMILKNIRTI-TSGR 383
            + +S +  +  ++TI T+G+
Sbjct: 337 ASPSSTKAAIDLLQTISTTGK 357


>gi|160936902|ref|ZP_02084266.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440092|gb|EDP17839.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC
           BAA-613]
          Length = 449

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 114/281 (40%), Gaps = 43/281 (15%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + I+ +TGT GKS+V + +  + +++G+ +  +G             +  P       AL
Sbjct: 105 DQIIGITGTKGKSTVTTLLYHLLKQAGMDALLVG------------NIGIP-------AL 145

Query: 175 SYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            ++   +  T +  E S H L+      +    G   N+  +H+D++ T + Y  AK  +
Sbjct: 146 DHMEEVKPDTRIVFELSCHQLEYMT---VSPHIGILVNIHEEHLDHYGTMEKYVEAKHHI 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQV 291
           F+   P         DD     V        C   ++  G  G     K++  +  +   
Sbjct: 203 FKNQGP---------DDILICNVQCLPEEGTCPSGLIRAGMDGSG---KELDVVQEQDGT 250

Query: 292 TISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +   GK F        L G+   ++  VA G+C  +G+D  +    L+    +P R ++
Sbjct: 251 WVHFRGKSFCIPTDEIKLLGQHNYFDIGVAYGVCSILGMDDQVFARGLKTYEPLPHRLQY 310

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           +G   R G  Y D +  S   +  ++ ++T+     +++ G
Sbjct: 311 IG--EREGVKYYDDS-ISTICDTTIQALKTLKDTDTVLIGG 348


>gi|315656825|ref|ZP_07909712.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492780|gb|EFU82384.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 499

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 17/194 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGC 265
           TN+  DH+D H    A F      F   L K    ++ ADDA     +++V +R    G 
Sbjct: 197 TNIEPDHLD-HWGSSAAFEQAFVNFTGRLRKGGTLVLCADDAGVKRLAEQVSERGGADGP 255

Query: 266 RVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNA 315
           RV+S G+           +H  ++     + QVTI+  G+          + G+  + NA
Sbjct: 256 RVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLRIGGQHMLLNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A G    +G+D    +  L        R + VG    G RIY DY H    +   L+ 
Sbjct: 316 GGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVGERD-GVRIYDDYGHHPTEIAATLQA 374

Query: 376 IRTITS-GRIIVVF 388
            R +   GR++V F
Sbjct: 375 ARDLAGKGRLLVCF 388


>gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
 gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
          Length = 468

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FVA+ G + D H F+ +  A+GA A +VS A  L           P 
Sbjct: 29  VSTDSRTVGEGDLFVALKGERFDAHDFLAEVAARGASAALVSRAGVLPGL--------PQ 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L   +TR  L   A     +    ++AVTG++GK++V   +  +                
Sbjct: 81  LKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKTTVKEMIASVFA-------------- 126

Query: 153 ISSFAQDNRLTT 164
            ++  QD RL+T
Sbjct: 127 -AAVGQDARLST 137


>gi|126735378|ref|ZP_01751124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
 gi|126715933|gb|EBA12798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
          Length = 466

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 117/293 (39%), Gaps = 48/293 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSS---FQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           ++AVTG++GKS+ A+ +  I   +G  +     IG        A D  +           
Sbjct: 122 VIAVTGSNGKSTTAALIHHILVENGRPAQLAGNIGRGVLDIEPAHDGEV----------- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      V +E SS+  D  R   +      FTNL  DH+D H     YF AK RL
Sbjct: 171 -----------VVLELSSYQTDLAR--SMTPDVAVFTNLSPDHLDRHAGVGGYFAAKRRL 217

Query: 234 FEELLPKESPAIIYADDAYSKEVMKR-----AHNAGCRVLS---VGYQGKFIHLKK-VCA 284
           F E  P    A+I  D+A  + +  +       +   RV S   +  QG  +  +K   +
Sbjct: 218 FAEGGPDR--AVIGVDEAEGRYIANQLIEGPGDDRVIRVSSGQKLAGQGWTVFARKGFLS 275

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            H K +   S+   D   +  LPG     NA  A   C  +G+    +   ++    +P 
Sbjct: 276 EHRKGRQVGSI---DLRVITGLPGAHNHQNACAAYAACRTLGLGPKGIEAAMQSYPGLPH 332

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           R + V    R G  +V+ +  +N ++   K ++     R I    CGG + +G
Sbjct: 333 RSQVVA--ERDGVTFVNDSKATN-VDSAAKALQAFPKVRWI----CGGLQKEG 378


>gi|126650751|ref|ZP_01722967.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126592416|gb|EAZ86434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 462

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 17/210 (8%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  H+D     + Y  AK  + E +   +   +I ADDA  +++  +      +
Sbjct: 185 GIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRA-DGTLLINADDANIEKISLQKFKG--K 241

Query: 267 VLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           ++  G Q    +  K  AI   H   +  + V    ++   P  GE QVYNAL A   C 
Sbjct: 242 IIRFGLQDSADY--KASAIEFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAIAACS 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-T 380
            +G+     +  L     +    EF  T   G    +D   T+N  S+E  LK + T+  
Sbjct: 300 EMGLSIRQAIAGLRTFKQMARHLEF--TKGIGDSTIIDDTWTNNPTSVEAALKVLDTVGK 357

Query: 381 SGRIIVVFG----CGGDRDQGKRPIMGKIA 406
             ++I+V G     G   ++  R I  K+A
Sbjct: 358 EKKVILVLGDIKRLGNFEEKYHREIGSKVA 387


>gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 840

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81
           I+ + +DSR +      +F AI   + +G  +IP    +G    VV+S          + 
Sbjct: 33  IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 92

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              T+      L+V NT K L   + +  G     ++ +TG++GK+ V  ++ Q+     
Sbjct: 93  LKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIGITGSNGKTIVKEWLHQL----- 147

Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                + P   I  S  + ++++  P  ++     S L   G+    +  S  G  +   
Sbjct: 148 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 197

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256
           + IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +IY  D    S  V
Sbjct: 198 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 251

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K    A     S+    + +++ +V    +   ++      D  F  P   +  + N+L
Sbjct: 252 GKSMLTAREIAWSMKDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPFIDDASIENSL 311

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                C+ + + +  + E + +L  V  R E
Sbjct: 312 NCLAACLYLMVPADQITERMARLEPVAMRLE 342


>gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
          Length = 509

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 32/236 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V+ DSR +  G +FVA+VG + DGH +   A +QG  A++V S  +++          P
Sbjct: 70  QVTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQG--AVLVLSQKNIK--------GVP 119

Query: 92  ILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +VV +T++ L   A    +RL  K    ++ VTG++GK++    + Q+    G      
Sbjct: 120 CVVVADTQRALGDLARAHLARLREKGHIRVIGVTGSAGKTTTKDLMGQMLATYG------ 173

Query: 148 GPTSTISSFAQDNRLTTPSPIYLA-KALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LI 205
                + + + +N L  P  +  A +   +L ++      + AS+ G D H L  I  L 
Sbjct: 174 --NVVVPAGSLNNELGLPLTVLKADETTDFLVTE------MGASAVG-DLHYLTSIAPLD 224

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                 +G  H+    + +    AK  L   LLP +  A++ ADD     + + AH
Sbjct: 225 IAVVLIVGLAHLGGFGSAELVAQAKSELVTGLLP-QGIAVLNADDHRVIAMKELAH 279


>gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 455

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  V+ DSR I  G +FV I G + DGH F+  AI  GA A +  + +         
Sbjct: 21  ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGH--------- 70

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             N P    +L V +T K +   A     K    ++ +TG++GK++    V  +  +   
Sbjct: 71  -PNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAK--- 126

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200
             F +  T   ++F  +N +  P  I   K ++ +    V  + ++ +   H L Q    
Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLARP 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + +I    T +G  HI++  ++    +AKM + + L  +E    IY  D     + +RA
Sbjct: 179 DVAVI----TMIGEAHIEFLGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230

Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   + G+     IH   +   +H+       + G D +F  P+ G   V NA+ A
Sbjct: 231 AKLSQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287


>gi|298346709|ref|YP_003719396.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
 gi|298236770|gb|ADI67902.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
          Length = 499

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 17/194 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGC 265
           TN+  DH+D H    A F      F   L K    ++ ADDA     +++V +R    G 
Sbjct: 197 TNIEPDHLD-HWGSSAAFEQAFVDFTGRLRKGGALVLCADDAGVKRLAEQVSERGGADGP 255

Query: 266 RVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNA 315
           RV+S G+           +H  ++     + QVTI+  G+          + G+  + NA
Sbjct: 256 RVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLRIGGQHMLLNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A G    +G+D    +  L        R + VG    G RIY DY H    +   L+ 
Sbjct: 316 GGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVGERD-GVRIYDDYGHHPTEIAATLQA 374

Query: 376 IRTITS-GRIIVVF 388
            R +   GR++V F
Sbjct: 375 ARDLAGKGRLLVCF 388


>gi|229820895|ref|YP_002882421.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
 gi|229566808|gb|ACQ80659.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
          Length = 473

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 136/342 (39%), Gaps = 48/342 (14%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAV 120
           A  +GA+ +VVSSA         IR + P LV         L  S    +  +   ++AV
Sbjct: 56  AAVEGADVVVVSSA---------IRGDNPELVRARELGVEVLHRSAALARIANERELVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++ ++ +      +GL      PT+ I +  +D               S  +  
Sbjct: 107 AGTHGKTTTSAMLAVALTEAGLD-----PTAAIGAVVRD--------------WSSGARV 147

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G   V V A +   D   L     +A   TN+  DH+D++    A   A  R F   +  
Sbjct: 148 GAGRVFV-AEADESDSSFLAYAPRVA-VVTNIEADHLDHYADTDALVEA-FREFARRIVS 204

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLK----KVCAIHNKQQV 291
               +  ADD  S E+ + A   G RV + G  G+ +     H++    ++ A   + +V
Sbjct: 205 GGLLVACADDPGSLELARWATAQGIRVRTYGVGGEPLDPASDHVRITDLELDATSARAEV 264

Query: 292 T-ISVEG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           T ++ +G            PG   V +A+      + +G D+  +   L +      RFE
Sbjct: 265 TLVTADGLGPGPVRLRLAAPGRHTVLDAVAGWAAGLELGADAEQLAHGLARFTGTARRFE 324

Query: 348 FVGTNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVF 388
             G  + G R+  DYAH    +   +      +  GR++V+F
Sbjct: 325 TRG-EAGGVRVVDDYAHNPTKVRAALEAARLAVGDGRVLVLF 365


>gi|219558131|ref|ZP_03537207.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T17]
 gi|289570268|ref|ZP_06450495.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
 gi|289544022|gb|EFD47670.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
          Length = 482

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +AY        E ++P  +  ++  DD     + +RA   G RVL
Sbjct: 176 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 234

Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             G             +Q    G   H++    +   Q   +            +PG   
Sbjct: 235 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             NAL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    
Sbjct: 287 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 346

Query: 369 LEMILKNIRTIT----SGRIIVVF 388
           +   L   R +      GR +VVF
Sbjct: 347 ISATLAAARMVLEQGDGGRCMVVF 370


>gi|72382768|ref|YP_292123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL2A]
 gi|122063254|sp|Q46JA8|MURD_PROMT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72002618|gb|AAZ58420.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL2A]
          Length = 469

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 34/240 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPI-YLAKALS 175
           + +TGT+GK++V + +  I + + L++   G     +S  A +N       + +L   LS
Sbjct: 121 VGITGTNGKTTVTNMLNHILKLNNLNTDMGGNVGKALSKIALENMKNNDQELDWLVLELS 180

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G   V+                    G +T    DH++ H   ++YF  K  L E
Sbjct: 181 SFQIEGSPKVAP-----------------TIGIWTTFTPDHLERHNDMESYFKIKRSLLE 223

Query: 236 ELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
               K S  I  +DD Y    ++ + +    G    S+  Q  KF   +K     +K+Q+
Sbjct: 224 ----KSSIRIYNSDDQYLSSKRKELPKGIWVGTNQQSLYSQYQKFWIDQKGYIFEDKKQL 279

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             S        +  +PG+  + N L+A      IG+D + + + ++    +P R E++G 
Sbjct: 280 FHSS-------ILNIPGKHNLQNLLLAIAAAREIGLDDSSIAKSIKSFKSIPHRLEYLGN 332


>gi|304315705|ref|YP_003850850.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777207|gb|ADL67766.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 465

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 116/289 (40%), Gaps = 24/289 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRL--FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           N+  DH+DY +      N K     F  L+PK+   +   DD+ +  V+K   N    ++
Sbjct: 184 NVDSDHLDYFKNID---NIKQSFTQFANLVPKDGFVVACGDDSNTMSVLK---NVDRNII 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAI 325
           + G         K      K   +  V        +F   + G+  +YNAL    +C  +
Sbjct: 238 TFGIDSNCTWNAKNIKFDEKGFPSFDVYYNGVFIQNFELSIVGKHNIYNALATLAVCHLL 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D       ++K      RFEF GT   G  I  DYAH    ++  L +       RII
Sbjct: 298 GVDIKSTPSIIKKFKGTHRRFEFKGT-LDGAIIIDDYAHHPTEIKATLSSALNYPHNRII 356

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            +F                 + D ADI I+TD    R +D   + A+ +  +    ++GN
Sbjct: 357 CIFQPHTYSRTYSLLQDFATSFDNADITIITDIYAAREKDTGIVHAKDLAKL--IRDRGN 414

Query: 445 RIEAIRTAIEMLN-------KQDVLVVAGKG--HETVHIVTNGEKKMSV 484
               I+   ++++         D+++  G G  +E  +++ N  KK ++
Sbjct: 415 ETYYIKEFTDIVDYLRSIIKSGDLVITIGAGDVYEVGNMLLNFNKKAAI 463


>gi|83949551|ref|ZP_00958284.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens
           ISM]
 gi|83837450|gb|EAP76746.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens
           ISM]
          Length = 470

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 12/185 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+++  T++   +     F   +P    A+   DDA  + ++ +  +   RV++
Sbjct: 185 TNIDPEHMEHWGTEE-NLHRGFYEFVSNIPFYGLAVCCTDDADVQTLVGKVTDR--RVVT 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDF---DFLFPLPGEFQVYNALVAAGLC 322
            G+  +   ++ +   +   Q    + +  EG D    D + P+PG+  V NAL A  + 
Sbjct: 242 YGFNAQ-ADVRGMNLRYEAGQAHFDIALRGEGDDKVIKDCVLPMPGDHNVSNALSAVAVA 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+ SA + E L     V  RF  VG    G  I  DY H    +  +LK  R  T G
Sbjct: 301 RHLGMRSAEIREALANFGGVNRRFTRVG-EVDGVVIIDDYGHHPTEIAAVLKAARQATEG 359

Query: 383 RIIVV 387
           R+I V
Sbjct: 360 RVIAV 364


>gi|146295957|ref|YP_001179728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166224756|sp|A4XI02|MURD_CALS8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145409533|gb|ABP66537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 453

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 28/200 (14%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           SS   T   +E SS  L+  +    K + G   N+  DH++ H     Y  AKMR+FE  
Sbjct: 155 SSTDDTIFVIEISSFQLETIKY--FKPMVGCILNITPDHLNRHMNMDNYIRAKMRIFEN- 211

Query: 238 LPKESPAIIYADDAYSKE--------VMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIH 286
           + +E  +++  D++ +++        V+  + N      SV   G FI+   L KV  + 
Sbjct: 212 IDQEGYSVLNMDNSITRDLIGCAKGTVITFSKNESDTQNSVFVDGDFIYRNFLGKVEKVM 271

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            K  +              +PGE  + N L A G  +   I  +++ + L++   V  R 
Sbjct: 272 RKDDIF-------------MPGEHNLENTLAAIGCVLPFEIQPSIIEKTLKEFKGVEHRI 318

Query: 347 EFVGTNSRGGRIYVDYAHTS 366
           EFV     G R Y D   T+
Sbjct: 319 EFV-REINGVRFYNDSKGTN 337


>gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
 gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
          Length = 473

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 38/241 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +F A  G + DGH +     AQ A     ++  + +          P +VV
Sbjct: 34  DSREVAPGSLFAAFAGERVDGHDY-----AQRAVEAGAAAVLAARPV------GVPAIVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+    L   A     +   +++A+TG++GK+S    + Q+ QR G + +  G      S
Sbjct: 83  DDVVGALGALARAAVERLGTSVVALTGSAGKTSTKDLIAQLLQRHGPTVWTPG------S 136

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHR----LDGIKLIAGSFT 210
           F  +N +  P        L+ LS+   T H+ +E  + G+   R    L   ++  G   
Sbjct: 137 F--NNEIGLP--------LTALSATAETEHLVLEMGARGIGHIRYLTELTPPRI--GLVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H+    +++A   AK  + E  LP++  A++ ADD   + +  R      RVL  
Sbjct: 185 NVGSAHLGEFGSREAIAQAKGEMVEG-LPEDGCAVLNADDPLVRAMASRTK---ARVLLF 240

Query: 271 G 271
           G
Sbjct: 241 G 241


>gi|317124649|ref|YP_004098761.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
 gi|315588737|gb|ADU48034.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
          Length = 488

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 139/372 (37%), Gaps = 73/372 (19%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQR 139
            S++IR +   L     R    L  S+  G   H +  +AV G +GK++  S +    Q 
Sbjct: 93  MSSSIRDDNVELRAARARGAKVLHRSQGLGSLMHGQRPVAVAGANGKTTTTSLLTVALQG 152

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR- 198
            GL            SFA                           V  E + HG + HR 
Sbjct: 153 CGLDP----------SFA---------------------------VGGELARHGTNAHRG 175

Query: 199 LDGIKLIA-----GSF----------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            D I ++      GSF          TN+  DH+D++ +    F      +E L+    P
Sbjct: 176 ADDIFVVEADESDGSFIVYRPEVAIVTNVQPDHLDFYGS----FAVVQAAYEALVATIQP 231

Query: 244 A---IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKD 299
               +  ADDA S+ + +RA   G RVL+ G++    + L            T+  EG  
Sbjct: 232 GGLLVTCADDAGSRALAERATARGTRVLTYGFRPDADVALGDYRQDGLTSGATVLDEGVR 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 +PG     NA+ A    +  +G     VL  L        RFE  G  + G  +
Sbjct: 292 RLLTLGIPGRHNALNAVAAYTAAVHGLGQQPDRVLAGLASFTGTRRRFEPKG-EAAGVVV 350

Query: 359 YVDYAHTSNSLEMILKNIR--TITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA 413
             DYAH +  +  +++      +  GR+IVVF        RD      +G+  L  AD+ 
Sbjct: 351 VDDYAHNAGKVAAVVETASQLVVRPGRLIVVFQPHLYSRTRDFAVE--LGR-GLAPADVV 407

Query: 414 IVTDDNPRSEDP 425
           IV D     EDP
Sbjct: 408 IVMDVYAAREDP 419


>gi|281356446|ref|ZP_06242938.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317138|gb|EFB01160.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC
           BAA-548]
          Length = 511

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 38/85 (44%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P PG     NAL    L   IG D A  +E LE+   V  R ++ G  + G  +Y DYA
Sbjct: 318 LPQPGFHMAMNALAIDALLEWIGFDPAETIEALERFDGVWRRNDYAGLTASGATVYDDYA 377

Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388
           H    +    + +R +  G I  VF
Sbjct: 378 HNPEKIVSCFRAMREMGDGNIYAVF 402


>gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
 gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
          Length = 475

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 156/379 (41%), Gaps = 68/379 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR  +AG ++VA  G   DGH F+  A+  GA A       SL +        T +
Sbjct: 29  VVTDSRLAEAGSLYVARRGESADGHDFVEAALGNGAVA-------SLAEREV---PGTYV 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG-----LSSF- 145
           LV D    F  L A  +  + P+  ++AVTG+SGK+S    + Q+   +G     + S+ 
Sbjct: 79  LVPDVQEAFARL-ARWMVDELPDLQVVAVTGSSGKTSTKDLLGQVLAEAGPTIAPIESYN 137

Query: 146 -QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            ++G   T+           P+  YL   ++ + + G  H++               +  
Sbjct: 138 SEVGVPLTVCRI-------EPTTEYL---VAEMGASGPGHIAY--------------LTA 173

Query: 205 IA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           IA    G   N+G  H+    +QQ   + K  + E  LP +  A++ ADD     + +R 
Sbjct: 174 IAPPRVGIVLNVGSAHLGGFGSQQGIADTKAAIVEG-LPADGLAVLNADDPLVAAMSERV 232

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAI--------HNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +   +  S+    + +  + V A           + + T++V G+      P+    +V
Sbjct: 233 TSGEVQYFSLDAD-RAVRDESVTAWAEDLALDEAGRARFTVAVRGQGGTERHPV--HLRV 289

Query: 313 YNALVAAGLCIA------IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             A +AA           +G+D+A  +  L +   +  R+    T    G + ++  + +
Sbjct: 290 RGAHMAANALAVLLAVRHVGVDTADAVAALSRAEAI-SRWRMEVTERPDGVMVINDGYNA 348

Query: 367 N--SLEMILKNIRTITSGR 383
           N  S+   L  +R +  GR
Sbjct: 349 NPESMRAALTALRDMAHGR 367


>gi|116495994|ref|YP_807728.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei ATCC
           334]
 gi|116106144|gb|ABJ71286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei ATCC 334]
          Length = 462

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 153/364 (42%), Gaps = 42/364 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +FV + G + DGH FIP A   GA A  V++ +       T +  T ++V 
Sbjct: 32  DSRKLKPGMLFVPLRGER-DGHEFIPAAATAGAVATFVAADH----LPVTTKLIT-LVVP 85

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D  +    L    L  K    ++A+TG++GK++       I       + Q     T  +
Sbjct: 86  DPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVKTPDN 139

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA----GSFT 210
           +  +N +  P        ++ LS +  T V V     G+D+  +L  +  +A       T
Sbjct: 140 Y--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSTLAEPDVAVIT 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +G  HI++ +T+    +AKM + + L  K+    I+  D     + +RA        + 
Sbjct: 188 MIGEAHIEFFKTRDKIADAKMEITDGL--KDDGTFIFNGD--EPLLQERAKKITQERETF 243

Query: 271 GYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           G   +   F H   +    N  + T+     D  F  P+ GE+ V NAL A  +     +
Sbjct: 244 GLHPENTIFAH--SISGHRNHTEFTVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHV 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
              ++ + L    V   R +++     G +I  D Y     +++ ++ +    T +GR I
Sbjct: 301 KPEIMQKALAHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHI 359

Query: 386 VVFG 389
            V G
Sbjct: 360 AVLG 363


>gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
 gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
          Length = 453

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/340 (19%), Positives = 143/340 (42%), Gaps = 36/340 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           KD  +++N   +      E  I  ++ DSR ++ G +F+  +G   DGH +I  A  +GA
Sbjct: 6   KDLEKILNAKKVNITSDTE--ITGIAIDSRKVKQGDLFIPFLGENVDGHNYIESAFEKGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A     + SL+D      S+  I+ V+++ + +   A           +A+TG++GK++
Sbjct: 64  AA-----SLSLKD---DFVSSNNIIYVNDSYEAIQTLAKHYLDSLNAKTIAITGSNGKTT 115

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      + +++  T    +F  +N L  P  I  A   S +       + +E
Sbjct: 116 TKDIITSVLS----TKYKVHKTQ--GNF--NNELGVPLTILAAPEDSEI-------LVLE 160

Query: 189 ASSHGLDQHRLDGI-KLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             + G  Q  LD + KL+  ++   TN+G  HI++ ++++    AK  +    + K+   
Sbjct: 161 MGADGFGQ--LDFLSKLVEPNYTVITNIGESHIEFFKSREGIAKAKFEITNG-MKKDGYF 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   D+   K ++  +           Y    +    +     + ++   +   D  +  
Sbjct: 218 VYNGDEVLLKSLVDSSDFNTTSCGENNYNDIILENYTIT----RDRIDFKLNISDEQYFT 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            L G+  ++N + A  +   IG+ +  + + +E    + G
Sbjct: 274 KLKGKHNLFNIMFATAIASKIGLTNEEIRKAIENTVEITG 313


>gi|92116831|ref|YP_576560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
 gi|91799725|gb|ABE62100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
          Length = 478

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 125/301 (41%), Gaps = 49/301 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I  G ++ AI G+  DGH F+  A+  GA   V+ +A     F+A    +
Sbjct: 27  ITGISIDSRTIVPGDVYFAIKGDVHDGHAFVDAALKAGAALAVIEAAQR-DKFAA----D 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-----LSS 144
            P+L+VD+    L   A     +    ++AVTG+ GK+S    ++ +    G     ++S
Sbjct: 82  APLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSVLGAQGKTHASVAS 141

Query: 145 F--QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           F    G   T++   +D R       +  A  +S L      H+++              
Sbjct: 142 FNNHWGVPLTLARCPEDARFAIFEIGMNHAGEISPLVKMVRPHIAI-------------- 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +   H+++    +A  +AK  +FE + PK +  ++  D+A    + +RA 
Sbjct: 188 -------ITTVEPVHLEFFSGIEAIADAKAEIFEGVEPKGA-VVLNRDNAQFARLQRRAK 239

Query: 262 NAG-CRVLSVGYQGKF------IHLKKVC-AIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             G  +++S G   K       + L   C A+H +      + G +  +   +PG     
Sbjct: 240 KLGIAKIVSFGADEKADARLLDVALHPACSAVHAR------ILGHELTYKLAMPGRHMAM 293

Query: 314 N 314
           N
Sbjct: 294 N 294


>gi|306820583|ref|ZP_07454214.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551400|gb|EFM39360.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 113/309 (36%), Gaps = 85/309 (27%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPI 168
           K  EN +A+ GT GK++  S +  +  ++     +  PTS I    ++   N     S I
Sbjct: 99  KEYENSIAIAGTHGKTTTTSMITLVFDKA-----EKNPTSLIGGMFKNIGGNVEIGNSDI 153

Query: 169 YLAKALSYLSS--QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
           ++++A  Y+ S  Q    V+V                      TN+  DH+DY +     
Sbjct: 154 FISEACEYVDSFLQFYPKVAV---------------------ITNIEEDHLDYFEDLSQI 192

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            N+ ++ F   + +    I   DD   ++ +K        V   G+              
Sbjct: 193 KNSFLK-FANQVKEGGFVIANGDDENVRDTLKDCKR---NVYYYGFN------------- 235

Query: 287 NKQQVTISVEGKDF--------DFLFP-------------------LPGEFQVYNALVAA 319
                    EG DF        DF +P                   + G+  VYNA  A 
Sbjct: 236 ---------EGNDFIIDNLEFDDFGYPCFDIFYANDGVLIDNYKLNVFGKHNVYNATSAI 286

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                + I+   +   +EK   V  RFE++G    G R++ DYAH    ++  L  I+++
Sbjct: 287 VSACMLDIEKEDIKNAIEKFTGVGRRFEYIGEKD-GVRVFDDYAHHPTEIKSTLDAIKSL 345

Query: 380 TSGRIIVVF 388
              R   +F
Sbjct: 346 KKNRFFSIF 354


>gi|282862160|ref|ZP_06271223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
 gi|282563185|gb|EFB68724.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
          Length = 477

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 26/166 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LAVTGT+GK++    +  I + +GL +  +G                
Sbjct: 108 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIG------------- 154

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + L  A+  L  +    ++VE SS+ L  H    ++  + +  NL  DH+D+H +  
Sbjct: 155 ---VSLLDAV--LGEETYDVLAVELSSYQL--HWAPSLRADSAAVLNLAPDHLDWHGSMD 207

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL 268
           AY   K R++E        A +Y A D  ++++++ A    GCR +
Sbjct: 208 AYAADKGRVYE----GNRVACVYNAQDPATEDLVREADVEEGCRAI 249


>gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 467

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 132/301 (43%), Gaps = 24/301 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL     + P    ++ +  +S D+R +QAG +FVA+  ++ DGH F+  A   GA A
Sbjct: 7   FSELSAVFGVAPEGGTDQPVTGISIDTRTLQAGDLFVALK-DQRDGHDFVSPAFKAGAAA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSS 128
            +VS  Y  +        +  +  V +T K L     A+R        ++AVTG++GK+ 
Sbjct: 66  ALVSEGYVRR------AEDGALFRVSDTLKALEALGRAARDRLSPDARVIAVTGSAGKTG 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               ++      G++          S  + +N      P+ LA+ +   +  GV  + + 
Sbjct: 120 TKEMLRACLSHLGVTH--------ASEKSYNNHWGV--PLTLAR-MPRETRFGVFEIGMN 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +       ++  ++  A   T +   H+++  + +A  +AK  +FE LLP  + AII  
Sbjct: 169 HAGEIRPLTKM--VRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEGLLPGGT-AIIKF 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           D+ ++  +   A   G + ++ G+  G  +    +   H+   +++ +  +       +P
Sbjct: 226 DNPHAARLKAIAERLGAKAVTFGFSAGADVCGDDLVLDHDGSTLSVRLGDRRIPLRIAMP 285

Query: 308 G 308
           G
Sbjct: 286 G 286


>gi|315181134|gb|ADT88048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           furnissii NCTC 11218]
          Length = 453

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 17/142 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  VS+D+R I    +FVA+VG + D H F  QA+A GA+A++V  A  +       
Sbjct: 21  DTDIAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERALDV------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N P LVV NT+  L      ++ +     +A+TG+ GK++V   V  I    G   F 
Sbjct: 74  --NVPQLVVSNTKTALGQLGCWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVLFT 131

Query: 147 IG--------PTSTISSFAQDN 160
            G        P + + S  QD+
Sbjct: 132 AGNFNNDIGVPLTLLRSTPQDD 153


>gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
 gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
          Length = 455

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/379 (20%), Positives = 152/379 (40%), Gaps = 61/379 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   + DSR ++ G +F+ +V +  DGH ++  A + GA   +  + +        + S+
Sbjct: 24  VTSTAFDSRQVKPGGLFIPLVADN-DGHHYVDAAESNGATVALWQADHQ------NVPSH 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS------ 143
            P+++V +T       AS    +    ++AV+G++GK++   F+  I Q S  +      
Sbjct: 77  LPVIIVPDTLAAYQQLASHYLSQVDPLVVAVSGSNGKTTTKDFIAAIGQTSYKTVKTPEN 136

Query: 144 -SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   TI S   D  L       L   +       +T +S           +L  +
Sbjct: 137 FNNEIGVPQTILSMPTDTEL-------LVIEIGMDHPGDLTFLS-----------KL--V 176

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K      T +G  HI++ +T++   + KM +   L  KE   +++  D     +++R   
Sbjct: 177 KPDIALLTMIGEAHIEFFKTRERIADGKMEIINGL--KEHGHLVFNGD--EPLLLER--- 229

Query: 263 AGCRVLSVGYQGKFIH----LKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQV 312
                  VG     +H    L     +   +      Q +         F  P+ G + V
Sbjct: 230 -------VGQHAHLLHDSFGLNSTNDLFASEIDMTPVQASFKTNQSAQRFTIPMTGRYNV 282

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLE 370
            NAL A  +   + I    + + L +  +   R E++     GG+I  D   ++ + + E
Sbjct: 283 TNALSAITVGHLLHISDKKIAQALAEAPITENRTEWLD-GQFGGKILSDVYNSNPTAAKE 341

Query: 371 MILKNIRTITSGRIIVVFG 389
           ++     T T G+ I V G
Sbjct: 342 VLHFFADTPTQGKRIAVLG 360


>gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 509

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 13/115 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R I+ G +F+A  G   DGH F+ +A  +GA A +VS     + F        P
Sbjct: 28  NISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKGAIAAIVSEG-KYKSF--------P 78

Query: 92  ILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLS 143
           +++V +T K L   AS  Y ++      ++AVTG+ GK++    +  +  + G+S
Sbjct: 79  LIIVQDTLKALHDMAS-YYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVS 132


>gi|118581149|ref|YP_902399.1| Mur ligase middle domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118503859|gb|ABL00342.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379]
          Length = 406

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 119/289 (41%), Gaps = 24/289 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRL 162
           L   R Y K     +AVTG+ GK+S   F+ +I   S   S +IG   +   +  ++ R 
Sbjct: 21  LICRRFYDK--TTAIAVTGSCGKTSTTHFLGKIL--SDRDSCRIGILFNCRKAIIKNLRR 76

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S  ++           +  V VE +  G    RL  ++   G  T++G+DH    +T
Sbjct: 77  VNSSHRFV-----------LQEVGVEGT--GCMNERLPLLRPRIGIVTSVGQDHYCNFRT 123

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKK 281
            +A    K +L  E LP+   A++ ADD +   V+  A  +  RVL+ G ++   +    
Sbjct: 124 LEATAFEKGKLI-EFLPESGVAVLNADDPH---VLAMARRSKARVLTYGLWEEADVRGSD 179

Query: 282 V-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           + CA   +  + ++ +G+       L G     + L A    +A GID       L  + 
Sbjct: 180 IRCAWPERLSLAVTYQGESVRIETGLFGSLLASSILAAVCGALAAGIDLKQCAASLHAVE 239

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             P R     T+ R   I         ++  +L+ +    + R  VVFG
Sbjct: 240 SFPRRMTIHATSQRAWYICDTAKAPYWTVAKVLEPMTDAAAPRKTVVFG 288


>gi|218708487|ref|YP_002416108.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus LGP32]
 gi|254766031|sp|B7VJ04|MURC_VIBSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218321506|emb|CAV17458.1| UDP-N-acetylmuramate-alanine ligase [Vibrio splendidus LGP32]
          Length = 486

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 46/285 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A M 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAVMC 233

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  EL+P+ S  +I     +S++   R  N     +  G QGKF            
Sbjct: 234 VDDPVVRELIPQVSRQVITY--GFSEDADIRIEN----YVQEGQQGKF------------ 275

Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              T+  EGK + D    +PG     NA  A  +     I    +L+ +        RF+
Sbjct: 276 ---TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFD 332

Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +G    G  + +   DY H    +++ ++  R+  T  R++++F
Sbjct: 333 HLGEYETGKGVAMLVDDYGHHPTEVDVTIQAARSGWTDKRLVMIF 377


>gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 467

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 146/372 (39%), Gaps = 47/372 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R +  G +FVA+ G + D H F+ QA A GA   VV +  +L      I  + P+
Sbjct: 30  ISTDTRSLPPGCLFVALQGERFDAHDFLAQAHAGGAGGAVVRAGQALP----AIPGDFPL 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V +T   L   A     +    + AV G++GK++    V  I    G           
Sbjct: 86  YEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRG----------- 134

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
             +   +  L     + L   L  L    V  V     +   +  RL   I+  AG  T 
Sbjct: 135 -PALKTEGNLNNEVGVPL--TLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITV 191

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----------SKEVMKRAH 261
           +  +H++   + +    A+  LF EL P E+ A++  DD             +    RA 
Sbjct: 192 VQPEHLEGLGSLEGVAEAEGELFRELSP-EAVAVVNLDDPLIPAQAAKGRGKRLTFGRAE 250

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +A  R+  V  +G+               +T+  +G+D+       GE    NA  A  L
Sbjct: 251 SADVRLSQVETRGR-----------EGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFAL 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379
            +A+G      +  LE       R   V  +   G   VD  + +N  S++  L  +RT+
Sbjct: 300 ALALGYSPEECVRGLESARPYARRLNVV--DGLHGVTVVDDCYNANPASMDAALDTLRTL 357

Query: 380 TS--GRIIVVFG 389
            +  GR + V G
Sbjct: 358 VTAGGRAVAVLG 369


>gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 462

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 153/364 (42%), Gaps = 42/364 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +FV + G + DGH FIP A   GA A  V++ +       T +  T ++V 
Sbjct: 32  DSRKLKPGMLFVPLRGER-DGHEFIPVAATAGAVATFVAADH----LPVTTKLIT-LVVP 85

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D  +    L    L  K    ++A+TG++GK++       I       + Q     T  +
Sbjct: 86  DPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVKTPDN 139

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA----GSFT 210
           +  +N +  P        ++ LS +  T V V     G+D+  +L  +  +A       T
Sbjct: 140 Y--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSTLAEPDVAVIT 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +G  HI++ +T+    +AKM + + L  K+    I+  D     + +RA        + 
Sbjct: 188 MIGEAHIEFFKTRDKIADAKMEITDGL--KDDGTFIFNGD--EPLLQERAKKITQERETF 243

Query: 271 GYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           G   +   F H   +    N  + T+     D  F  P+ GE+ V NAL A  +     +
Sbjct: 244 GLHPENTIFAH--SISGHRNHTEFTVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHV 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
              ++ + L    V   R +++     G +I  D Y     +++ ++ +    T +GR I
Sbjct: 301 KPEIMQKALAHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHI 359

Query: 386 VVFG 389
            V G
Sbjct: 360 AVLG 363


>gi|117928219|ref|YP_872770.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus
           11B]
 gi|189028966|sp|A0LTM4|MURC_ACIC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117648682|gb|ABK52784.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus
           11B]
          Length = 477

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 123/319 (38%), Gaps = 44/319 (13%)

Query: 83  SATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S  +   TP L V   R    L      AS + G+     +AV GT GK++  S V +  
Sbjct: 84  STAVPPTTPELAVARERGLPVLPRAAALASVMAGR---RGVAVAGTHGKTTTTSMVVRAL 140

Query: 138 QRSGL-SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           QR G   SF IG       S A D   +    I++A+A                     D
Sbjct: 141 QRCGADPSFAIGADLGEPGSNAHDGTGS----IFVAEADES------------------D 178

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           +  L  +   A   TN+  DH++ H    A  +A    F   +P     +   DD  ++E
Sbjct: 179 ESFLL-LPFHAAVVTNVEADHLN-HYADLAAIHAAFDRFVAKVPDGGFLVACTDDPGAEE 236

Query: 256 VMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEF 310
           +  RA   G  V   G   +     + L+   A     +  ++++G     L   +PG  
Sbjct: 237 IASRAARRGTVVRRYGTSPRADVRLVDLRLEVA---GSRFAVAMDGTVLGELQLRVPGAH 293

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NA  A  + + +G   + V E L        RF+  G  + G R++ DYAH    + 
Sbjct: 294 NALNATAAVAVTVGLGFPFSEVAEGLADFTGARRRFQPQGEVA-GIRVFDDYAHHPTEIA 352

Query: 371 MILKNIRTIT-SGRIIVVF 388
             L+  R +   GR++V F
Sbjct: 353 ATLRAARVVADGGRLVVAF 371


>gi|328542962|ref|YP_004303071.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [polymorphum gilvum SL003B-26A1]
 gi|326412708|gb|ADZ69771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polymorphum gilvum SL003B-26A1]
          Length = 476

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 152/378 (40%), Gaps = 47/378 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +Q G  FVAI G + DGH F+       A     + A   +D    + ++
Sbjct: 27  IGGISIDSRTLQPGDAFVAIEGERFDGHDFV-----AAALEAGAALALVARDRLERLPAD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VVD+  + L   A     +    I+AVTG+ GK+     ++   +RSG +      
Sbjct: 82  GRYVVVDDPLEALRGLARAARARSHARIVAVTGSVGKTGTKEALRLALERSGRTH----- 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206
            ++++SF  +N      P+ LA+ +   +  GV  + +         H  +   L+A   
Sbjct: 137 -ASVASF--NNHWGV--PLTLAR-MPADTDYGVFEIGM--------NHAGEITPLVALVR 182

Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +   H+++  + +    AK  +F  L P    AI+  D+A    +   A NA
Sbjct: 183 PHVAIITTVQPVHLEFFGSVEKIAQAKAEIFTGLEPG-GVAILNRDNAQFDLLTFLARNA 241

Query: 264 G-CRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           G   + + G   +     +  A+      +   V G+D  +    PG   V N+L     
Sbjct: 242 GVTEIRTFGEDPQADAFPQRVAMQTGSSSIQARVLGQDITYKIGAPGRHLVKNSLAVLLA 301

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYVDYAHTSNSLEM----- 371
            + +G D AL    L  L    GR    G  +R     G    +D ++ +N   M     
Sbjct: 302 VVELGADLALAGIALGDLSAPKGR----GAQTRLRLPAGVATLIDESYNANPASMRAALQ 357

Query: 372 ILKNIRTITSGRIIVVFG 389
           +L + +    GR I V G
Sbjct: 358 VLGDAQVSPPGRRIAVLG 375


>gi|262066314|ref|ZP_06025926.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380009|gb|EFE87527.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 463

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 22/194 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGC 265
           TN+  DH+D H   +   N K    E +L  +  +II  D   SK +M    K       
Sbjct: 173 TNIDADHLDVHGNLE---NIKKSFIEFILHTQKESIICMD---SKNLMDAISKLPEEKSV 226

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              S+  +   I  K +  ++ K   +V ++ E K  +F   +PGE  + N+L    L +
Sbjct: 227 TTYSIKDENANICAKNIRIVNRKTIFEVYVNKELKG-EFSLNIPGEHNIQNSLPVIYLAL 285

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILK 374
             G++   + E L +      R++ +         G  ++  RI  DYAH    ++  LK
Sbjct: 286 KFGLNKEEIQEALNQFKGSKRRYDVLYDQELENGYGNKTKKVRIVDDYAHHPTEIKATLK 345

Query: 375 NIRTITSGRIIVVF 388
            I+++ + R++ +F
Sbjct: 346 AIKSVDNSRLVAIF 359


>gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
 gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
          Length = 468

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+D+R + A  +F+A+ G + D H F   A+  GA A++VS    ++         
Sbjct: 24  VANVSTDTRTVSAHTLFIALKGERFDAHDFCQNAMDNGAAALLVSRHLPVE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSG 141
            P LVV +T + L L  + L       H    +A+TG+ GK++V     +I  + G
Sbjct: 75  LPQLVVKDTHQALGLLGAWLKQSMEQDHGLKTIALTGSCGKTTVKEMAAEILSQKG 130


>gi|254488363|ref|ZP_05101568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
 gi|214045232|gb|EEB85870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
          Length = 464

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 120/297 (40%), Gaps = 42/297 (14%)

Query: 101 FLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           F   FA++ +    +   I+AVTG++GKS+ ++ +  I + +G       PT    +  +
Sbjct: 104 FFQSFATQDWDGFDQMPKIIAVTGSNGKSTTSALIHHILKHAGR------PTQLAGNIGR 157

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                 P+          +  + V    +E SS+  D  R   +      FTNL  DH+D
Sbjct: 158 GVLDIEPA----------IDGEVVV---LELSSYQTDLAR--NLTPDIAVFTNLSPDHLD 202

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSV------ 270
            H     YF AK RLF E  P    AII  D+A  + +  +        RV+ V      
Sbjct: 203 RHAGMGGYFAAKRRLFAEGGPDR--AIIGVDEAEGRYLAGQLSEGAADDRVIRVSVDRKL 260

Query: 271 -GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G   +    K   + + K +   S+   D   +  LPG     NA  A   C ++G   
Sbjct: 261 SGPGWQVFARKGFLSEYRKGKQVGSI---DLRGVTGLPGAHNHQNACAAYAACRSLGFAP 317

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMI--LKNIRTITSG 382
            ++         +P R + +G   RG R   D   T+  ++++ +   +NIR I  G
Sbjct: 318 KVIEAAFASFGGLPHRSQTIG-ELRGIRFVNDSKATNVDSAVKALAAFRNIRWICGG 373


>gi|206602131|gb|EDZ38613.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 464

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 125/322 (38%), Gaps = 51/322 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKA 173
           +AV G+ GK++  S +  +    GL      PT  +      F  + R+   + I++A+A
Sbjct: 109 VAVAGSHGKTTTTSMIAHVLAHGGLD-----PTCVVGGRVPGFGGNARVGKKN-IFVAEA 162

Query: 174 ----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S+L      HV+V                      TN+ ++H+DY+Q+    F+ 
Sbjct: 163 DESDGSFLKIS--PHVAV---------------------VTNIDQEHLDYYQS----FDQ 195

Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
               FE  L   P E  A++  DD     ++  + NA             +    V A  
Sbjct: 196 LKAAFERFLASVPPEGLAVVCLDDPELSNILP-SLNAPHWTYGFNPSADVVG-SDVSAEG 253

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                ++ + GKD   F   +PG   V NAL    +    G+++  V E LE+   V  R
Sbjct: 254 LSTSFSVRLRGKDIGSFSLNIPGVHNVLNALATIAVGHHFGLEAECVREALERFRGVGRR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           F  VG    G RI  DY H    + + L   R     R +VV      R    R ++ + 
Sbjct: 314 FTQVGEEG-GIRIVDDYGHHPTEIGVTLAAARQAYPDRRLVV-AFQPHRFSRTRDLLSRF 371

Query: 406 --ALDLADIAIVTDDNPRSEDP 425
             A  LAD+ ++ +     E P
Sbjct: 372 ASAFQLADVLVLGEIYGAGESP 393


>gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia proteamaculans 568]
 gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia
           proteamaculans 568]
          Length = 453

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 9/113 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I EV++D+R +  G +FVA+ G + D H F             V++       S  +  
Sbjct: 23  QIVEVTTDTRQVTTGCLFVALKGERFDAHDF---------AVDAVAAGAGALLVSKRLLV 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV      I +  G
Sbjct: 74  EVPQLVVKDTRLALGQLAAWVRQQVPTRVVALTGSSGKTSVKEMAAAILRECG 126


>gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
 gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
          Length = 461

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 19/209 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I +V  DSR    G +F A+ G K DG  ++     +GA A+VV  + + +   A  R
Sbjct: 31  KRIADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKGAAAVVVPKSRAAE---ALAR 87

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              P+L  ++    L   A     + P    + +TG+ GKS+    + +I   + L S  
Sbjct: 88  VRCPVLAAEDVLSSLHELAQNYVQRFPSVKTIGITGSCGKSTTKEALARIT--AVLGSTA 145

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLI 205
             P +  S +        P  I+    L   S  GV  + ++   H  +  R+ G +K  
Sbjct: 146 KTPGNLNSEYG------LPLSIF---GLDETSRYGVFEMGID---HVGEMDRMVGMLKPS 193

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               TN+G  H++   +Q+     K R+F
Sbjct: 194 IALLTNVGISHLEKMGSQEIIAEQKARIF 222


>gi|296327768|ref|ZP_06870307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155115|gb|EFG95893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 613

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 159/369 (43%), Gaps = 51/369 (13%)

Query: 9   KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           KDF E++     N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 178 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 232

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA ++V++    ++D          I+ V +T   +   A +   K    ++ +TG+
Sbjct: 233 LDKGA-SLVIADNIDVKD--------ERIIKVSDTIATMQDLAIKYRKKLDIQVVGITGS 283

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V        L S +     T  ++  +N +  P  +     L+    +   
Sbjct: 284 NGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 330

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  L E ++ + +
Sbjct: 331 VLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVIKENT 389

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              +  DD Y          A   V  +G+     +  +     +K    + ++GK+++ 
Sbjct: 390 --FVCGDDEYL---------AKLDVNKIGFNNSNTYKIESYKFSDKGSKFV-LDGKEYE- 436

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  + N  +A  L   IG+    +   L+++ +   RF+ +     G  IY++ 
Sbjct: 437 -MSLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISNMRFQEIKI---GEDIYIND 492

Query: 363 AHTSNSLEM 371
           A+ ++   M
Sbjct: 493 AYNASPTSM 501


>gi|262200427|ref|YP_003271635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
 gi|262083774|gb|ACY19742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
          Length = 436

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 121/293 (41%), Gaps = 39/293 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N  + DSR +  G +FV IV  + DGH FI  A+  GA A + S+        A I   
Sbjct: 20  VNGATIDSRSVSTGQLFVPIVAAR-DGHDFISAALDAGAPAYLTSAGAVDGAAGAAI--- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
               +VD+T + L+   +    + P  ++ VTG+ GK+S    +      +GL +     
Sbjct: 76  ----IVDDTARALAALGAAARDRLPGRVVGVTGSVGKTSTKDLL------AGLLATTFRT 125

Query: 150 TSTISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            ++  SF  +N L  P     +P      +  + ++G+ H+ +  S            K 
Sbjct: 126 AASEKSF--NNELGLPLTLVNAPDDTEAVVLEMGARGIGHIDLLCSIG----------KP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  T +   H++     +A   AK  L E  LP +  A++ AD    K V   A    
Sbjct: 174 TVGIITRVEGVHLELFGNIEAVARAKGELVEA-LPDDGIAVLNAD---HKHVAAMADRTS 229

Query: 265 CRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYN 314
            RV++ G   +  +H   V  I ++ + +  +     + D      GE QV N
Sbjct: 230 ARVITFGLTPESDVHASAVV-IDDELRASFRLHSPWGETDIRLAARGEHQVPN 281


>gi|191639474|ref|YP_001988640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239630392|ref|ZP_04673423.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301067545|ref|YP_003789568.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|190713776|emb|CAQ67782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239526675|gb|EEQ65676.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300439952|gb|ADK19718.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|327383569|gb|AEA55045.1| MurF [Lactobacillus casei LC2W]
 gi|327386761|gb|AEA58235.1| MurF [Lactobacillus casei BD-II]
          Length = 462

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 153/364 (42%), Gaps = 42/364 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +FV + G + DGH FIP A   GA A  V++ +       T +  T ++V 
Sbjct: 32  DSRKLKPGMLFVPLRGER-DGHEFIPAAATAGAVATFVAADH----LPVTTKLIT-LVVP 85

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D  +    L    L  K    ++A+TG++GK++       I       + Q     T  +
Sbjct: 86  DPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVKTPDN 139

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA----GSFT 210
           +  +N +  P        ++ LS +  T V V     G+D+  +L  +  +A       T
Sbjct: 140 Y--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSTLAEPDVAVIT 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +G  HI++ +T+    +AKM + + L  K+    I+  D     + +RA        + 
Sbjct: 188 MIGEAHIEFFKTRDKIADAKMEITDGL--KDDGTFIFNGD--EPLLQERAKKITQERETF 243

Query: 271 GYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           G   +   F H   +    N  + T+     D  F  P+ GE+ V NAL A  +     +
Sbjct: 244 GLHPENTIFAH--SISGHRNHTEFTVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHV 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
              ++ + L    V   R +++     G +I  D Y     +++ ++ +    T +GR I
Sbjct: 301 KPEIMQKALAHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHI 359

Query: 386 VVFG 389
            V G
Sbjct: 360 AVLG 363


>gi|308185657|ref|YP_003929788.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
 gi|308056167|gb|ADO08339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
          Length = 438

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 42/238 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I                   ALS 
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIG----------------LPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L S    +V +E SS  L+      +K  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LQSPAQLYV-LELSSFQLETTH--SLKAAAATVLNVTEDHMDRYPLGMQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    I+ ADDA +  V      A  R +S G      HL       NKQQ +I +
Sbjct: 205 ----NAQICIVNADDALTMPV----RGADKRCVSFGVDFGDYHL-------NKQQGSIWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             K    L      + G+    NAL A  L  A+G+  A  L  L + + +  RF+ V
Sbjct: 250 RVKGEKVLNTAEMKMAGQHNYTNALAALALADAVGLPRASSLAALTQFNGLAHRFQLV 307


>gi|289809142|ref|ZP_06539771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 216

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G +FVA+ G + D H F  +A A GA A++VS    +         + P ++V +TR+  
Sbjct: 4   GCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------DLPQVIVKDTRQAF 54

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
              A+ +  + P  ++A+TG+SGK+SV      I  + G + +      T S+F  D
Sbjct: 55  GQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY------TASNFNND 105


>gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
 gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
          Length = 457

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 152/385 (39%), Gaps = 56/385 (14%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA   VV+ 
Sbjct: 16  NDVSIF----EDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA---VVT- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S    +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 67  ------LSEKEVANHPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194
           +      ++++   T        +N +  P  +           +G   + +E    H  
Sbjct: 121 LLS----TTYKTYKTQG----NYNNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 165

Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADD 250
           D H L  +     +   L G  H+ + + +      KM++ + + P     +PA    +D
Sbjct: 166 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPADPIVED 225

Query: 251 --AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                K+V++    A   V  +              I  K  +T      +     P+ G
Sbjct: 226 YLPTDKKVIRFGQGAELEVTDL--------------IERKDSLTFKANFLEQALDLPVTG 271

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           ++   NA++AA + +  G+    + +  + L +   R E+    + G  I  D Y     
Sbjct: 272 KYNATNAMIAAYVALQEGVSEEQIRQAFQNLELTRNRTEWKKA-ANGADILSDVYNANPT 330

Query: 368 SLEMILKNIRTITS---GRIIVVFG 389
           ++++IL+    I++   G+ I V  
Sbjct: 331 AMKLILETFSAISANEGGKKIAVLA 355


>gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 473

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 126/335 (37%), Gaps = 49/335 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++  R+++ V  DSR  +   +F+AI G + DGH FIP+ + QGA       A S +D  
Sbjct: 22  EFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVMEQGA-----LCAVSEEDLG 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               S   +   +   K ++    R        ++ ++G+ GK+S    +  +  +    
Sbjct: 77  DVPYSYIKVASCEQALKDIAEHYRRSLDI---KVVGISGSVGKTSTKEMIASVLSQ---- 129

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +     T  +F  +N +  P  ++  +    ++   +     E  +      R D   
Sbjct: 130 --KYSVLKTEGNF--NNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICV 185

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKR 259
           L     TN+G  H++   ++     AK  +F   + +    I+  DD     YS E    
Sbjct: 186 L-----TNIGVAHMENLGSRDGILKAKTEMF-AYMNENGTIILNGDDDKLRGYSPE---- 235

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEF 310
                      G    +  L + C  H +      + G D  F  P         +PG  
Sbjct: 236 ----------NGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAH 285

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            VYNAL A  +  A+G+    +   +E    + GR
Sbjct: 286 MVYNALAATAVGYALGMTDREICAGIEANVPIAGR 320


>gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 460

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 13/119 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I+EVS+D+R+I A  +FVA+ G + D H F   A   GA A++VS    ++      
Sbjct: 21  DTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTAKDNGAVALLVSRHLPVE------ 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSG 141
               P ++V +TR  L L  + L  +  +      LA+TG+ GK++V      I    G
Sbjct: 75  ---LPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGSCGKTTVKEMCAAILATKG 130


>gi|170760239|ref|YP_001788888.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A3
           str. Loch Maree]
 gi|229486484|sp|B1KTF0|MURC_CLOBM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169407228|gb|ACA55639.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 458

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 127/328 (38%), Gaps = 63/328 (19%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           ++A I S+ P  +++   K + L     F   L   +  NI A++GT GK++  S +  +
Sbjct: 75  YTAAIASDNP-EIIEAKEKNIKLMDRADFLGNLMKGYKYNI-AISGTHGKTTTTSMLSHV 132

Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             ++      + PT  +         N     S  ++ +A  Y SS              
Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSF------------- 174

Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                   +K     G   N+  DH+DY++      NA  + F +L+PK+   + Y +D 
Sbjct: 175 --------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCA---IHNKQQVTISVEGKDFDF 302
             + ++K A+   C V++ G     I        +K C    +    Q   SV+      
Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFDVFKDNQKLFSVK------ 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGID--SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
              +PG+  + N+L  A +CI +  D     ++E +E       RFE  G  +    I  
Sbjct: 277 -LNVPGKHNILNSL--ASICIGLASDMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-D 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF 388
           DYAH    +   L   +     ++  VF
Sbjct: 333 DYAHHPTEISATLDAAKKYPHNKMFCVF 360


>gi|170755790|ref|YP_001783188.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B1
           str. Okra]
 gi|229486483|sp|B1IH05|MURC_CLOBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169121002|gb|ACA44838.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B1 str.
           Okra]
          Length = 458

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 126/325 (38%), Gaps = 57/325 (17%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           ++A I S+ P  +++   K + L     F   L   +  NI A++GT GK++  S +  +
Sbjct: 75  YTAAIASDNP-EIIEAKEKNIKLMDRADFLGNLMKGYKYNI-AISGTHGKTTTTSMLSHV 132

Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             ++      + PT  +         N     S  ++ +A  Y SS              
Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSF------------- 174

Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                   +K     G   N+  DH+DY++      NA  + F +L+PK+   + Y +D 
Sbjct: 175 --------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFP 305
             + ++K A+   C V++ G     I        +K C   +     +    K F     
Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278

Query: 306 LPGEFQVYNALVAAGLCIAIGID--SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PG+  + N+L  A +CI +  D     ++E +E       RFE  G  +    I  DYA
Sbjct: 279 VPGKHNILNSL--ASICIGLASDMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYA 335

Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388
           H    +   L   +     ++  VF
Sbjct: 336 HHPTEISATLDAAKKYPHNKMFCVF 360


>gi|83648521|ref|YP_436956.1| UDP-N-acetylmuramate--L-alanine ligase [Hahella chejuensis KCTC
           2396]
 gi|109892707|sp|Q2S9Z3|MURC_HAHCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83636564|gb|ABC32531.1| UDP-N-acetylmuramate--alanine ligase [Hahella chejuensis KCTC 2396]
          Length = 472

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 163/426 (38%), Gaps = 65/426 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SSA +  +   T  +   I V+        L   R       + +A+ GT GK
Sbjct: 73  GANVVVTSSAVAKDNPEVTAANEQRIPVIARAEMLAELMRYR-------HGVAIAGTHGK 125

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  +   +GL      PT     F    RL +        A  YL ++     +
Sbjct: 126 TTTTSLMASVLGEAGLD-----PT-----FVIGGRLNSAGTNAKLGASRYLVAE-----A 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKE 241
            E+ +  L  H    + ++    TN+  DH+     D+ + +Q + +     F   LP  
Sbjct: 171 DESDASFL--HLTPMVSVV----TNIDADHMHTYGGDFEKLKQTFVD-----FLHNLPFY 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298
             A++  DD   +E++ R    G  V++ G+  K   ++ V       Q + + +     
Sbjct: 220 GVAVMCYDDPVVREIIPRV---GRSVITYGFNEK-ADVRAVDIAQQGMQTSFTAKRPGGH 275

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRG 355
            D      +PG+  V NAL    +    GI    ++  L K   V  RF+  G      G
Sbjct: 276 PDLRISLNMPGKHNVLNALAVIAVATDEGIADEAIVSALNKFQGVGRRFQVYGNYPVDEG 335

Query: 356 GRIYV-DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLAD 411
             + V DY H    ++  +K IR      R++ VF     R    R +       L   D
Sbjct: 336 SVMLVDDYGHHPREVDATIKAIRDGWPEKRLVAVFQP--HRYTRTRDLYEDFVQVLSKVD 393

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + ++ D  P  E   P      +   I       P FIE+G  ++A+ + +  L   D+L
Sbjct: 394 VLVLMDVYPAGEKEIPGADGRSLCRSIRQRGQLDPIFIERGQDVKAVLSGV--LQDGDLL 451

Query: 463 VVAGKG 468
           +  G G
Sbjct: 452 LTQGAG 457


>gi|110680536|ref|YP_683543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
 gi|118595688|sp|Q163I6|MURD_ROSDO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|109456652|gb|ABG32857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
          Length = 464

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 98/259 (37%), Gaps = 33/259 (12%)

Query: 101 FLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           F   FA+  +        ++AVTG++GKS+ ++ +  I +        +G  +T++    
Sbjct: 104 FFRSFATNAWANFDTAPRVVAVTGSNGKSTTSALIHHILE-------HVGRPATLAGNIG 156

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              L    P                 V +E SS+  D  R   +      FTNL  DH+D
Sbjct: 157 RGVLDIDPP------------HDGEVVVLELSSYQTDLAR--SLTPDVAVFTNLSEDHLD 202

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-- 276
            H     YF AK RLF E  P  +   +  D+            A  RV+ + +  K   
Sbjct: 203 RHGGMGGYFAAKRRLFAEGGPDRAIVGVDEDEGLFLAGQLAEGRADDRVIRISFAQKLTG 262

Query: 277 -----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                   K   + + K +   SV   D   +  LPG     NA  A  +C ++G+   +
Sbjct: 263 PGWQVFARKGFLSEYRKGKQIASV---DLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKV 319

Query: 332 VLEHLEKLHVVPGRFEFVG 350
           +   L     +P R + VG
Sbjct: 320 IEAALHSFQGLPHRSQLVG 338


>gi|308233779|ref|ZP_07664516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium vaginae
           DSM 15829]
 gi|328943772|ref|ZP_08241237.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
 gi|327491741|gb|EGF23515.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
          Length = 493

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 11/193 (5%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A    N+  DHI++H + QAY  AK R+F   L  +  AII  DD Y K +  R    G 
Sbjct: 184 AAILLNITPDHIEWHGSMQAYAAAKERIFAN-LTTDDLAIISRDDLYCKAIYSRLVERGL 242

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGL 321
             + V        L+   A  +   + + + G     +      L G   + N L A+ L
Sbjct: 243 SPVCVDTSQDPKTLQA--AYCSDSMLYVRLNGTTTPLIKASEAALKGMHNIQNMLAASAL 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + IG+    + + L+    +  R E+V T    G  +V+ +  +N+ + + K +     
Sbjct: 301 ALFIGVSVDAIRQVLQTFTTLEHRLEYVATIH--GVSFVNDSKATNT-DSVEKALTAFPC 357

Query: 382 GRIIVVFGCGGDR 394
           G  IV+ G G D+
Sbjct: 358 GSTIVLLG-GHDK 369


>gi|189220257|ref|YP_001940897.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
           infernorum V4]
 gi|189187115|gb|ACD84300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
           infernorum V4]
          Length = 442

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 122/308 (39%), Gaps = 66/308 (21%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG----P 149
           +V     FLS +        P   + VTG+ GKS+ +S +  + +  G  ++  G    P
Sbjct: 100 IVSQADIFLSFW--------PGKTVGVTGSKGKSTTSSLIYHLLKEGGFKAYLGGNIGIP 151

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +  FA +            KA++ L    ++   +E   H         I L    +
Sbjct: 152 PFHLLPFADE------------KAIAVLE---LSSYQLEYCKHS------PAIAL----W 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL  +H++YH + +AY  AK  +     PK+       D A    ++ +    G   + 
Sbjct: 187 LNLFHEHLNYHGSFEAYAQAKSHIGRFQSPKDYFIYDPGDQALELFLLSQEKMPG---IP 243

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +  +GK            + QV +S  G        +PG     NAL AA + + +G+ +
Sbjct: 244 LPVEGK-----------GRSQVDLSRLG--------IPGRHNKKNALFAARVALLLGMPA 284

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + E L     +P R E+V T   GG  Y + +  S   E  L  I  I S R ++V  
Sbjct: 285 EAISEALSSFRGLPHRLEYVAT--VGGISYYNDS-ISTVPEATLAGIEAIPSVRTLIV-- 339

Query: 390 CGGDRDQG 397
             G +D+G
Sbjct: 340 --GGQDRG 345


>gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
 gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
          Length = 478

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTP 91
           V SDSR +  G +FV I G + DGH F    + QGA  ++         F+    S +  
Sbjct: 29  VRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQGARVLIAER----DPFNGECPSADVT 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           I+VV ++ K L   A+    +    ++ VTGT+GK++V   + Q+
Sbjct: 85  IMVVGDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVKELLAQV 129


>gi|21220566|ref|NP_626345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           coelicolor A3(2)]
 gi|289772189|ref|ZP_06531567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
 gi|30316144|sp|Q9S2W9|MURD_STRCO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|5689958|emb|CAB51995.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptomyces coelicolor A3(2)]
 gi|289702388|gb|EFD69817.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
          Length = 471

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 32/209 (15%)

Query: 64  IAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + +G E IV +  +      F+A  ++  P+         L+     L G+ P   LAVT
Sbjct: 66  LPEGTELIVTAPGWKPTKPLFTAAGQAGVPVW----GDVELAWRLRGLNGRKPAPWLAVT 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GK++    +  I + +GL +  +G                   + L  A++    Q 
Sbjct: 122 GTNGKTTTVQMLASILKAAGLRTAAVGNIG----------------VSLLDAVT--GEQE 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E      
Sbjct: 164 YDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE----GN 217

Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
             A +Y  AD A    V       GCR +
Sbjct: 218 HVACVYNVADKATEDLVRAADVEEGCRAI 246


>gi|229815102|ref|ZP_04445439.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
 gi|229809332|gb|EEP45097.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
          Length = 468

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 122/298 (40%), Gaps = 34/298 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           PE   A+TGT+GK++V S   ++ + SGL S  +G          D R       ++A+ 
Sbjct: 109 PERWCAITGTNGKTTVTSLTDELLRASGLDSVAVGNIGNAPIHEVDRR--EEGEWFVAEL 166

Query: 174 LSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            SY L++    H  V                       NL  DH+ +H++ + Y  AK+R
Sbjct: 167 SSYQLATTEAFHPRVAV-------------------LLNLSPDHLAWHRSHENYALAKIR 207

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +F+ +   +  AI+  +D      + R    G RVL +G+                  +T
Sbjct: 208 MFKNMDDGDI-AIVNVEDEGLSPYLDRICGPGRRVLHLGFADDGAADAAFV---RDDVLT 263

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + + G +   +      + G   V NAL A+   +A G     V   L +   +P R E 
Sbjct: 264 VRMAGDEHALVRVDELRIVGAHNVLNALAASAAALACGASVTGVCSGLREFKPLPHRLEP 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           V T    G  YV+ +  +N+ + +L  +      RI+++ G G D+       M K+A
Sbjct: 324 VDTVD--GVRYVNDSKATNT-DAVLTALAAFDGARIVLLLG-GSDKGTPLEEFMAKVA 377


>gi|20094483|ref|NP_614330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus
           kandleri AV19]
 gi|19887585|gb|AAM02260.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus
           kandleri AV19]
          Length = 470

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 37/283 (13%)

Query: 201 GIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           GI+L  G  TN+  +H+D +  + + Y   K+ + E      S  ++   D   +E+ KR
Sbjct: 183 GIELDVGVLTNVSPEHLDEFGGSFERYVRRKLTITEM-----SEVLVAGYDC--EELRKR 235

Query: 260 AHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN 314
            ++A     R     Y G+            ++   + V+G D   +  F L G + V N
Sbjct: 236 LNDAVWYSVRDPDADYYGR------------RENGRLVVKGPDASVEADFHLIG-YYVEN 282

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMIL 373
              A   C+  G D   V E L     VPGR E +G  S  GR+ Y+D AH  + L+  L
Sbjct: 283 CTGAVAACLEFGADPEGVAEGLATFEGVPGRMELLGEFS--GRVAYIDAAHNPDGLKASL 340

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
              R +     GR++V         +  +   G+I  + AD    +  N   E  ++  A
Sbjct: 341 PPFRELADERGGRLLVSVDNPDTVTERDKFEFGRIVGEYADFVAASGYNETLERLDRSAA 400

Query: 431 -EIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLVVAGKG 468
            E++ G      +G  ++++R A E +     + DVL+  G G
Sbjct: 401 EEVVKGAESAGCEGVAVDSVREAAEEVAARSEEGDVLLHVGPG 443


>gi|299536844|ref|ZP_07050151.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
 gi|298727668|gb|EFI68236.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
          Length = 461

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGC 265
           G  TN+G  H+D     + Y  AK  + E +  ++   II ADDA +K++ +KR      
Sbjct: 185 GIITNIGVHHLDGCLNLEGYIKAKAEIVEGI-KEDGTLIINADDANTKKISLKRFKG--- 240

Query: 266 RVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +++  G Q    +   KV   +   +  + V  + ++   P  GE QVYNAL A      
Sbjct: 241 KIIKFGLQDTADYKASKVEFANTGMKFVLEVADERYNVFVPGYGEHQVYNALAAIAASHE 300

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-TS 381
           +G+     +  L     +    EF  T   G    +D   T+N  S+E  LK I T+   
Sbjct: 301 MGLTIRQAIAGLRTFKQMARHLEF--TTGLGDSTIIDDTWTNNPTSVEAALKVIDTVGKD 358

Query: 382 GRIIVVFG 389
            ++I+V G
Sbjct: 359 KKVILVLG 366


>gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Treponema denticola F0402]
          Length = 430

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 132/346 (38%), Gaps = 83/346 (23%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI----RS 88
           V  DSR+++   +F+ + G  +DGH++I  A+  GA+  VV   Y  ++ +A +      
Sbjct: 41  VVMDSRNVKNNSLFIPLRGENQDGHVYIEPALKNGAKFFVVDFDYLDENETALLSLCKNY 100

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   + V N  K L   A     K P N+  + +TG+SGK++    +  I  +       
Sbjct: 101 DASCVAVKNNLKALQDAARYYLSKFP-NLYKIGITGSSGKTTTKEILASIYSKK------ 153

Query: 147 IGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
               +T+S+    N  T  P  ++  +           H   EA    L  +R   I  I
Sbjct: 154 ---YNTVSTKGNLNSETGLPLSVFEVRP---------EH---EAGIFELGMNRKGEIAEI 198

Query: 206 AGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEEL-------------------LP 239
           A          TN+G  HI    T+QA    K  +F                      +P
Sbjct: 199 ASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFKDDALGFIPECEFTDFLKDVP 258

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S   +  +D+    ++++  +AG     + Y+G+                        
Sbjct: 259 RGSVFTVSDNDS---SLVQKVEDAGVLGSKIFYRGE------------------------ 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            + LFPLPG + V NAL+   L    G  +  +   LE +  + GR
Sbjct: 292 -EILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGR 336


>gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
 gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
          Length = 453

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 121/302 (40%), Gaps = 24/302 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   + ++  V +DSR    G +FVA+ G   D H F+   +AQGA   +V 
Sbjct: 7   VAQLAGGRLAGADAEVTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQGAAGALVR 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                QDF+        ++ VD+TR  L   A+    +    ++ +TG++GK++V   + 
Sbjct: 67  -----QDFAL---PGVALVQVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVKEMLT 118

Query: 135 QI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            I    +G  +      +T  +F  D  L        A     +   G+ H        G
Sbjct: 119 AILAAHAGRDTV----LATAGNFNNDIGLPLTLLGLNAGHRYAVIEMGMNHFGEIRYLTG 174

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF-NAKMRLFEELLPKESPAIIYADDAY 252
           L + R   + L+     N  R H+    +  A    AK  +FE  L ++  A+I ADD +
Sbjct: 175 LARPR---VALV----NNALRAHLGGGFSGTADIARAKSEIFEG-LAEDGVAVINADDPH 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           +      A     R+LS G     ++ + V          +     D     P PGE  V
Sbjct: 227 AAIFRAAAAG--RRLLSFGLGEADVNARDVTLSDTAAHFVLCSPQGDVAVALPAPGEHNV 284

Query: 313 YN 314
            N
Sbjct: 285 RN 286


>gi|188532900|ref|YP_001906697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           tasmaniensis Et1/99]
 gi|188027942|emb|CAO95799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 438

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 40/237 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A    L  P+ +Y+ +  S+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIGLPAL-TLLQQPAQLYVLELSSF 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E +S          +K  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 163 ---------QLETTSS---------LKAAAATLLNVTEDHMDRYPLGMQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                 +  ++ ADDA +  +      A  R +S G      HL +      +    + V
Sbjct: 205 ----NATACVVNADDAMTMPI----RGADARCVSFGADFGDYHLTR-----QQGSTWLRV 251

Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+   + D +  L G+    NAL A  L  A+G+  A  L+ L   + +P RF+ V
Sbjct: 252 QGEKVLNTDEMH-LVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQLV 307


>gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
 gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
          Length = 454

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V            +  N
Sbjct: 24  IESVSTDTRSIEQGALFVALVGERFDAHNFCQQAVESGAGALLVQK---------RVNVN 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P +VV +++  L   A+ ++       +A+TG+ GK++V   V  I Q  G   F  G
Sbjct: 75  VPQVVVGDSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133


>gi|184201130|ref|YP_001855337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila
           DC2201]
 gi|183581360|dbj|BAG29831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila
           DC2201]
          Length = 513

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 28/188 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+   +R  G+     L +TGT+GK++       I Q +GL +  +G             
Sbjct: 130 LAWRVNRREGRKSPEWLCITGTNGKTTTVGMTASILQAAGLKAVAVG------------N 177

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           + TP    L   + Y        ++VE SS  L  H +  +  +A +  N+  DH+D+H 
Sbjct: 178 VGTPILDALRDPVEY------DVLAVELSSFQL--HWMHSVSPLASAVLNVAEDHVDWHG 229

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHL 279
           + + Y   K R++E        A +Y  D    E +  A +   GCR  +VG+  +   L
Sbjct: 230 SYENYRADKSRVYE----NTRVACVYNADQPGAEELVEAADVVEGCR--AVGFTTQHPGL 283

Query: 280 KKVCAIHN 287
             V  + +
Sbjct: 284 SMVGVVED 291


>gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
 gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
          Length = 452

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 18/124 (14%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F     +  IN +  DSR I+ G +F+ + G + DGH FI  A A GA A     
Sbjct: 16  NDVSLF----EDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANGAVAT---- 66

Query: 76  AYSLQDFS-ATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                 FS   I S+ P ILVVD  + F  L A     K   +++AVTG++GK++    +
Sbjct: 67  ------FSEKNITSDYPYILVVDCLKAFQDL-AQYYLEKMRVDVIAVTGSNGKTTTKDMI 119

Query: 134 QQIC 137
             I 
Sbjct: 120 ATIL 123


>gi|294783651|ref|ZP_06748975.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480529|gb|EFG28306.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 463

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 22/194 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGC 265
           TN+  DH+D H       N K    E +L  +  +II  D   SK +M    K       
Sbjct: 173 TNIDADHLDVHGNLD---NIKKSFIEFILHTQKESIICMD---SKNLMDAISKLPEGKSV 226

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              S+  +   I+ K +  +  K   +V ++ E K  +F   +PGE  + N+L    L +
Sbjct: 227 TTYSIKDENADIYAKNIRIVDRKTIFEVYVNKELKG-EFSLNIPGEHNIQNSLPVIYLAL 285

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILK 374
             G++   + E L +      R++ +         G+ ++  RI  DYAH    ++  LK
Sbjct: 286 KFGLNKDEIQEALNQFKGSKRRYDVLYDQELENGYGSKTKRVRIVDDYAHHPTEIKATLK 345

Query: 375 NIRTITSGRIIVVF 388
            I+++ + R++ +F
Sbjct: 346 AIKSVDNSRLVAIF 359


>gi|283458376|ref|YP_003363000.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
 gi|283134415|dbj|BAI65180.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
          Length = 499

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 173/432 (40%), Gaps = 59/432 (13%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRS 140
           S  IR + P LV    +    L  S           ++AV GT GKS+ +S +  +  + 
Sbjct: 94  STAIREDNPELVAARAQGLRVLHRSEALAAVMGESQVVAVAGTHGKSTTSSMISVMFDQL 153

Query: 141 GLS-SFQIGPTSTISSFAQDNRLTT--PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G   SF +G  + I+    +  L    P  I++A+A              + S     ++
Sbjct: 154 GAQPSFAVG--TVIAGRGMNAHLGAQGPGSIFVAEA--------------DESDGSFVRY 197

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R   I ++    TN+  DH+D+++T +  F A  R    L P     +  ADDA + ++ 
Sbjct: 198 R-PAIAVV----TNVEPDHLDFYETDERVFEAFNRFVGSLAPN-GVVVTCADDAGAADLA 251

Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT---------ISVEGKDFDFLFPLP 307
            R+  AG  V++ G      + + ++ +  +              +  EG+  D    +P
Sbjct: 252 ARSRAAGVPVVTYGESADADLRISEITSAGSSSSSHLSWSFECHGVRYEGEQ-DLALKVP 310

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA  A    +  G ++A +   L +      RF   G  + G +++ DYAH   
Sbjct: 311 GIHNQLNASAAFASALISGYEAADIARALAEFVGADRRFTLRGEVA-GVKVFDDYAHHPT 369

Query: 368 SLEMILKNIRTITSG-RIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +   L+  RT+  G  + V+F        R+  K       AL +AD A V D  P  E
Sbjct: 370 EVFRALETGRTVADGHNLYVIFQPHLFSRTREFAKEFAQ---ALSMADRAHVLDIYPARE 426

Query: 424 DP-EKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGH---------ET 471
            P E + +E+I G  GF E       +AI   +      D+++  G G          E+
Sbjct: 427 LPIEGVTSELITG-AGFSEVRYATAEDAIEDIVTCAQDGDIVMTVGAGDVTALGARLLES 485

Query: 472 VHIVTNGEKKMS 483
           + I   GE K S
Sbjct: 486 LEIRHGGESKKS 497


>gi|302877580|ref|YP_003846144.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
 gi|302580369|gb|ADL54380.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
          Length = 466

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 132/340 (38%), Gaps = 62/340 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS+A S  +          I VV        L   R         +AV GT GK+
Sbjct: 65  ADVVVVSTAVSQDNPEVVAARARHIPVVPRAMMLAELMRLR-------QGIAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S    +  R G   +F IG    ++S   + +L T   I                  
Sbjct: 118 TTTSLTASVLARGGFDPTFVIG--GKLNSSGTNAKLGTGEFIV----------------- 158

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKE 241
           VEA         L  I  +    TN+  DH+     D+ + +QA+ +     F E LP  
Sbjct: 159 VEADESDASFLYLQPILAVV---TNIDEDHMETYGHDFAKLKQAFID-----FIEHLPFY 210

Query: 242 SPAIIYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             A++  DDA  +E++ R          + +A  R ++V ++G  +     C    +Q  
Sbjct: 211 GRAMVCVDDANIREILPRVTKPVTTYGFSEDAQIRAINVRHEGGKMCFTAQC----RQNG 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T     +D      LPG   V NAL A  + + IG+    ++  L++   V  RF+  G 
Sbjct: 267 T----PRDLVITLNLPGRHNVLNALAAIAIALEIGVADDAIIAALDEFEGVGRRFQRYGE 322

Query: 352 NS--RGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
            +   GGR  +  DY H    +   L  +R    GR +V+
Sbjct: 323 IALPEGGRFTLIDDYGHHPVEMAATLAAVRGAFPGRRLVL 362


>gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
          Length = 473

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 32/238 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +F A  G + DGH +  +A+  GA A++ +    +           P +VV
Sbjct: 34  DSREVAPGSLFAAFAGERVDGHDYARRAVEAGAAAVLAARPVGV-----------PAIVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++    L   A  +  +    ++ +TG++GK+S    + Q+ QR G + +  G       
Sbjct: 83  EDVVGALGALARAVVERLGTTVVGLTGSAGKTSTKDLIAQLLQRKGPTVWTPG------- 135

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAGSFTNLG 213
            + +N +  P         +  ++    H+ +E  + G+   R   D      G   N+G
Sbjct: 136 -SLNNEIGLP-------VTALTATAATEHLVLEMGARGIGHIRYLADLTPPRIGLVLNVG 187

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             H+    +++A   AK  L  E+LP++  A++ ADD   + +  R      RVL  G
Sbjct: 188 SAHLGEFGSREAIAQAKGELV-EVLPEDGCAVLNADDPLVRAMASRTR---ARVLLFG 241


>gi|256788295|ref|ZP_05526726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           lividans TK24]
          Length = 475

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 32/209 (15%)

Query: 64  IAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + +G E IV +  +      F+A  ++  P+         L+     L G+ P   LAVT
Sbjct: 70  LPEGTELIVTAPGWKPTKPLFTAAGQAGVPVW----GDVELAWRLRGLNGRKPAPWLAVT 125

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GK++    +  I + +GL +  +G                   + L  A++    Q 
Sbjct: 126 GTNGKTTTVQMLASILKAAGLRTAAVGNIG----------------VSLLDAVT--GEQE 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E      
Sbjct: 168 YDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE----GN 221

Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
             A +Y  AD A    V       GCR +
Sbjct: 222 HVACVYNVADKATEDLVRAADVEEGCRAI 250


>gi|110639124|ref|YP_679333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|118595652|sp|Q11RH3|MURD_CYTH3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110281805|gb|ABG59991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 450

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 147/361 (40%), Gaps = 48/361 (13%)

Query: 113 HP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           HP    +A+TG++GK++       I  + G   + +G    I +      +     +Y+ 
Sbjct: 102 HPGAKFIAITGSNGKTTTTLLTHHILAQLG---YSVGLGGNIGTSLARQIIHEKKDVYV- 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAK 230
                          +E SS  LD   +   K       N+  DH+D ++ + + Y  +K
Sbjct: 158 ---------------LELSSFQLDD--MYTFKADVAVLLNITPDHLDRYEYKFENYTASK 200

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIH 286
            R+F+ L P +   I Y++D+   E  K+ H    R + V     Y       +K   IH
Sbjct: 201 FRIFQNLTPADY-YITYSEDSVI-ESYKKDHPVDARYVPVSLKQLYSAGAYSDEKTIQIH 258

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 ++   ++F    PL G+    N + A    ++IG D    +  ++     P R 
Sbjct: 259 ALDDTVVTCNTEEF----PLQGKHNYINIMAALNAAVSIGADIHKSIASIKSFRNAPHRL 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC--GGDRDQGKRPIMGK 404
           EFVG  S  G  +V+ +  +N ++ +   + ++ +  +++V G   G D  Q +  +  K
Sbjct: 315 EFVG--SIYGVKFVNDSKATN-VDSVWYALDSMKTPVVLIVGGVDKGNDYSQIEALVKEK 371

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +A            +D  K+ +     +    E  + +EAIR A +   K D +++
Sbjct: 372 VHTVVA----------LGKDNSKVLSGFASMVSEIKEAHSMVEAIRIAHDSAKKGDTVLL 421

Query: 465 A 465
           +
Sbjct: 422 S 422


>gi|269118795|ref|YP_003306972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612673|gb|ACZ07041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 435

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 146/353 (41%), Gaps = 60/353 (16%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +IN V  +S  ++   +F+AI G    G+ +I +A  +GA        Y + D       
Sbjct: 24  EINNVLINSGEVRENDVFIAIRG----GNSYIQEAAEKGA--------YVIYDDKTKKTP 71

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                +V+++ KFL  FA          I+ +TG++GK++V   + Q+     LS+   G
Sbjct: 72  YPKAFLVNDSIKFLQKFAENWRNILDLKIIGITGSNGKTTVKDIIYQL-----LSTKYKG 126

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
             +  +    +N +  P  +  A+     +S     + +  S  G     +D +  IA  
Sbjct: 127 KKTEGN---LNNHIGLPVSLLRAE-----NSDDFLVLEMGMSGFG----EIDLLAAIAKP 174

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  H+++  +++  F AK  + + +  K     +  DD +  ++       G
Sbjct: 175 DYGIITNIGDSHLEFLGSRENVFKAKSEIIKHVKAK---MFLNGDDPFLGDL------PG 225

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------GEFQVYNALVA 318
            +V + G         K  A +  + + +S +G  FD    L       GE  + N L  
Sbjct: 226 IKVSADG---------KSTADYRAKNINLSGDGTKFDLNEGLTLETNLIGEHNILNLLFG 276

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +    GI +  + +  + + +   RF+ +     G  IY++ A+ ++ + M
Sbjct: 277 IAISEEFGIKTEDLADEFKNIKLTAMRFQKI---ENGNIIYINDAYNASPISM 326


>gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
 gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
          Length = 483

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 126/335 (37%), Gaps = 49/335 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++  R+++ V  DSR  +   +F+AI G + DGH FIP+ + QGA       A S +D  
Sbjct: 32  EFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVMEQGA-----LCAVSEEDLG 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               S   +   +   K ++    R        ++ ++G+ GK+S    +  +  +    
Sbjct: 87  DVPYSYIKVASCEQALKDIAEHYRRSLDI---KVVGISGSVGKTSTKEMIASVLSQ---- 139

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +     T  +F  +N +  P  ++  +    ++   +     E  +      R D   
Sbjct: 140 --KYSVLKTEGNF--NNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICV 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKR 259
           L     TN+G  H++   ++     AK  +F   + +    I+  DD     YS E    
Sbjct: 196 L-----TNIGVAHMENLGSRDGILKAKTEMF-AYMNENGTIILNGDDDKLRGYSPE---- 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEF 310
                      G    +  L + C  H +      + G D  F  P         +PG  
Sbjct: 246 ----------NGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAH 295

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            VYNAL A  +  A+G+    +   +E    + GR
Sbjct: 296 MVYNALAATAVGYALGMTDREICAGIEANVPIAGR 330


>gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 432

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 160/365 (43%), Gaps = 38/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+  AG +F+A+ G   +G+ F  QA+  G A AIV  + Y+ ++       N  
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPEN-------NRH 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I++VDN  + L   A+    +    ++ +TGT+GK++    +  +  +S    +  G   
Sbjct: 69  IILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +   KA   L+      + + A+  G  +  +   +   G  TN
Sbjct: 128 -------NNHIGVPMTLLRLKAEHELAV-----IEMGANHPGEIKFLVHIAEPDYGMITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L  KE S   I+ D+AY   +M  AH  G  ++  
Sbjct: 176 VGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHDNAY---LMDIAH--GLNLIPY 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326
           G +        V    N   +T   + GKD D       L GE+   NAL A  +    G
Sbjct: 231 GSEDALYVNGHVTG--NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFG 288

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384
           +++  + E L        R +   T      + +D A+ +N   M+  L+N R +T  + 
Sbjct: 289 VEAGKIDEALAGYTPRNNRSQLKKTADN--TLIID-AYNANPTSMMAALQNFRNMTVKKK 345

Query: 385 IVVFG 389
           +++ G
Sbjct: 346 MLILG 350


>gi|332704500|ref|ZP_08424588.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554649|gb|EGJ51693.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 454

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 123/316 (38%), Gaps = 40/316 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S + +I   +GL      PT  I                       L
Sbjct: 108 IAVAGTHGKTTTTSLLAEIFTAAGLD-----PTVIIGG--------------------RL 142

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF----TNLGRDHIDYHQTQQAYFNAKMRL 233
           +S G      E      +    DG  L+        TN+  DH+D++  QQA   A    
Sbjct: 143 NSWGANAYLGEGEYLIAEADESDGSFLVLAPIITIVTNVDADHLDFYPDQQAIDRAFTE- 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   +P     ++  DD   + ++        R+++ G +       ++ +   +    +
Sbjct: 202 FMNKVPFYGVNVVCGDDPGVERILPGIRR---RIMTYGLRPGNRIRGEITSCQERCIFKL 258

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V+ + + D +   PG   V N++ A G+ +  G+    +L+ LE+   V  RFE  G  
Sbjct: 259 YVDEEYWADVVLNKPGRHNVLNSMAAIGVALEAGLPKEAILQGLERFGGVGRRFEIKG-- 316

Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
            +GG + V DY H    +   L   +     R +VV      R    + + G      D+
Sbjct: 317 EKGGILVVDDYGHHPAEIGATLATAKDCYPERRLVV-AFQPHRFTRTKALFGDFCKVFDV 375

Query: 410 ADIAIVTDDNPRSEDP 425
           AD+ ++T+    SE P
Sbjct: 376 ADVLLLTEIYAASEAP 391


>gi|127514380|ref|YP_001095577.1| UDP-N-acetylmuramate--alanine ligase [Shewanella loihica PV-4]
 gi|166224729|sp|A3QIM0|MURC_SHELP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126639675|gb|ABO25318.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella loihica PV-4]
          Length = 484

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 139/342 (40%), Gaps = 63/342 (18%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR----KFLSLFASRLYGKHPENILAVT 121
           +GA+ +VVS+A           SN  IL     R    +   + A  +  +H    +AV 
Sbjct: 79  EGADVVVVSTAIDA--------SNPEILAAQERRIPIVRRAEMLAELMRYRHG---VAVA 127

Query: 122 GTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176
           GT GK++  S +  +  Q     +F IG    ++S   + RL   S   +A+A     S+
Sbjct: 128 GTHGKTTTTSLIASVYGQAERDPTFVIG--GLLNSAGTNARLGK-SRYLIAEADESDASF 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +  V                        TN+  DH+D ++       +    F  
Sbjct: 185 LHLQPMVSV-----------------------VTNIEADHMDTYEGDFEKLKSTFVDFLH 221

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----V 291
            LP    A+   DD   +E++ R    G +V++ G    F     V A++ +QQ      
Sbjct: 222 NLPFYGVAVACIDDPVVREILPR---IGRKVVTYG----FSEDADVQALNFEQQGYSSRF 274

Query: 292 TISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  EG  D D    LPG   V NAL A  +     I+   ++  L++   +  RF+ +G
Sbjct: 275 TVRREGMADLDLRVNLPGRHNVLNALAAIAVATEDEIEDEAIIRALDEFQGIGRRFQQLG 334

Query: 351 --TNSRGGRIYV-DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             T + G  + V DY H  + +   +K  R+     R+++++
Sbjct: 335 EFTTTAGEVMLVDDYGHHPSEVAATIKAARSGWPDKRLVMIY 376


>gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           harveyi ATCC BAA-1116]
 gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116]
          Length = 454

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V            +  N
Sbjct: 24  IESVSTDTRSIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQK---------RVNVN 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P +VV +++  L   A+ ++       +A+TG+ GK++V   V  I Q  G   F  G
Sbjct: 75  VPQVVVGDSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133


>gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
 gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
          Length = 452

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 18/124 (14%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F     +  IN +  DSR I+ G +F+ + G + DGH FI  A A GA A     
Sbjct: 16  NDVSLF----EDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANGAVAT---- 66

Query: 76  AYSLQDFS-ATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                 FS   I S+ P ILVVD  + F  L A     K   +++AVTG++GK++    +
Sbjct: 67  ------FSEKNITSDYPYILVVDCLKAFQDL-AQYYLEKMRVDVIAVTGSNGKTTTKDMI 119

Query: 134 QQIC 137
             I 
Sbjct: 120 ATIL 123


>gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
          Length = 477

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 158/389 (40%), Gaps = 34/389 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E+   +   P+      +  +S DSR +  G  F AI G+K DGH F   AIA GA  +V
Sbjct: 9   EMTEAMDGRPLGNLPDGVTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAAIATGAALLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+ A       A  R   P++VV++    L         +    I+A+TG+ GK+S    
Sbjct: 69  VAEAK----LPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGKTSSKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +++  + SG         ++ +SF  +N    P  + LA+ +   +  GV  V +   +H
Sbjct: 125 LRRALEPSGEVH------ASAASF--NNHWGVP--LTLAR-MPASAQYGVFEVGM---NH 170

Query: 193 GLDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +   L  +K++       T +   H+   +       AK  + E ++ K    ++  D
Sbjct: 171 PDEIRPL--VKMVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVV-KNGHVLLNRD 227

Query: 250 DAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL-- 306
           +     + KRA   +  +VL+ G   K  +    C +        +  GKD D +  +  
Sbjct: 228 NEKFSWLKKRASELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARIGKD-DVVVKIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHT 365
           PG   V NAL   G     G D A     L  +    GR      +  GG  + +D ++ 
Sbjct: 287 PGRHLVQNALAVLGAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDESYN 346

Query: 366 SNSLEM-----ILKNIRTITSGRIIVVFG 389
           +N   M     +L++      GR I V G
Sbjct: 347 ANPASMRAALELLRDTPVRLRGRRIAVLG 375


>gi|256827367|ref|YP_003151326.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
 gi|256583510|gb|ACU94644.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
          Length = 471

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 166/437 (37%), Gaps = 67/437 (15%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           I Q AE I  + A  +   S  I  N P L+    R       +R+  +    +  +A+ 
Sbjct: 55  IGQAAENIPDNPAPDVVVTSTAILDNNPELIAAKARNLPIWHRARMLAQLGVGKKTIAIA 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++ +S V      S L      PT  I              I  A   +  S +G
Sbjct: 115 GTHGKTTTSSMVA-----SALDGIGADPTFLIGG------------IVRAYHTNAHSGEG 157

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +V VEA         LD   ++    TN+  DH+D++   +   +AK   F   +P +
Sbjct: 158 AYYV-VEADESDKSFTYLDPYAVL---VTNVEADHLDHYNDLEE-IHAKFTEFMSQVPDD 212

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTIS------ 294
              ++ ADD   + ++  A + G R+++ G  +G   H++           T+       
Sbjct: 213 GLLVVCADD---EVLVSLAASTGKRMVTYGSAEGADAHIESWAPAGVGSTFTLKLPDGTL 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           VEG     +   PG   V NA     L   IG D+  V   L     V  RF+ VG  + 
Sbjct: 270 VEGS----VKQNPGRHNVLNAAGTLTLLWGIGEDAQDVARSLSNFAGVRRRFDLVG-EAD 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF--------GCGGD--RDQGKRPIMGK 404
           G  I  DYAH    +   +   + +   R+ V+F        G   D  R +        
Sbjct: 325 GVTIVDDYAHHPTEIAATIAAAKKLDFKRVHVLFQPHRYSRVGLFTDVLRSEFAH----- 379

Query: 405 IALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            A D AD A   D  P  E P          + ++    H  P  +   +R++ + + ++
Sbjct: 380 -AFDEADTAAFMDVYPAGETPVPGVNGKTFLDVLKDSSSH--PALVYIPHRLDTVSSLLD 436

Query: 455 MLNKQDVLVVAGKGHET 471
           M+   D+++  G G  T
Sbjct: 437 MVEAGDLVLTMGAGDVT 453


>gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
 gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
          Length = 470

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +  +
Sbjct: 23  VNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPEGVSED 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P+L+V++ +  L         +    ++AVTG+ GK+S    + ++    G
Sbjct: 76  APLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQG 127


>gi|78044616|ref|YP_360887.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|109892698|sp|Q3AAE7|MURC_CARHZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77996731|gb|ABB15630.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 464

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 38/278 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S +  + ++ G       P   +     D         Y AKA    
Sbjct: 119 IAVAGTHGKTTTSSMIAYVLEKEGFD-----PVIAVGGEIVDLG-------YNAKA---- 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLI--AGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             QG   V+    S G        +KL+  A   TN+  DH+DY+Q+ +    A  +  +
Sbjct: 163 -GQGEYMVAEADESDG------SFLKLLPYAAVITNIEADHLDYYQSFEEIKKAFKKFAD 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI- 293
            + P E   +   D+   +E++K       R  + G+  G    L+      N+    I 
Sbjct: 216 NIRP-EGFGVFCWDNLQVREMLKGYKK---RKFTYGFSPGSDFMLRDYREEQNQLVANIY 271

Query: 294 ---SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              ++EG   +    +PG+  + NA  A  +   IG+    + E L + +    RF+ +G
Sbjct: 272 YKNTLEG---ELRLKVPGKHNILNAAAATAVLRNIGLSFKAISERLLEFNGAKRRFQILG 328

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             + G  I  DYAH    +E  L+  +      ++VVF
Sbjct: 329 ERN-GALIVDDYAHHPTEVEATLRAAKLYKDRDVLVVF 365


>gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. RCC307]
 gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. RCC307]
          Length = 464

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 22/228 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR +Q G +F+ + G + DGH F+  A++ G     V+ A   +D++  +      
Sbjct: 37  ISTDSRALQPGDLFIPLRGERFDGHDFLDAAVSVG-----VAGALIARDWAGYVPEQLAT 91

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+T       A     +    ++AVTG++GK++    ++      G     +G    
Sbjct: 92  VVVDDTLSAYQQIALAWRRQLHCPVVAVTGSAGKTTTRELIKACLSPLGAIESSVG---- 147

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLD-GIKLIAGSFT 210
                ++N +  P  +  + +    S  G+    +E    GL + HRL    +      T
Sbjct: 148 ----NENNDIGVPRTMLRSNS----SHAGLV---LEMGMRGLGEIHRLSVCAEPDVAVIT 196

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           N+G  HI    ++ A   AK  + + L P     I   D     EV +
Sbjct: 197 NIGTAHIGRLGSRAAIAQAKCEITDRLKPSGLLVIPAGDPLLEAEVSR 244


>gi|51595036|ref|YP_069227.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186894042|ref|YP_001871154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis PB1/+]
 gi|60390355|sp|Q66EK7|MURD_YERPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51588318|emb|CAH19926.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697068|gb|ACC87697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 438

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 100/241 (41%), Gaps = 48/241 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           ++A+TG++GKS+V + V ++ + +G S      IG    ++   QDN+LT          
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIG-VPALTLLKQDNQLTV--------- 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMR 232
           L   S Q  T  S+ AS               A +  N+  DH D Y    Q Y  AK+R
Sbjct: 157 LELSSFQLETTHSLRAS---------------AATILNVTEDHTDRYPLGLQQYRAAKLR 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           ++E         I+ ADDA +  V      A  R +S G      HL       NKQQ  
Sbjct: 202 VYE----NAKVCIVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGE 246

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           I +  +    L      L G     NAL A  L  A+GI  A  L+ L     +P RF+ 
Sbjct: 247 IWLRVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQL 306

Query: 349 V 349
           V
Sbjct: 307 V 307


>gi|326382560|ref|ZP_08204251.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198679|gb|EGD55862.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 492

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 109/291 (37%), Gaps = 32/291 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----NAGC 265
           TN+  DH+D+  ++ AY       F  L+      ++  DD  +  +  R        G 
Sbjct: 193 TNIEADHLDFFGSEAAYVQV-FDDFVALIRSGGTLVLCLDDPGAAALAARCQADCARRGV 251

Query: 266 RVLSVGYQGK--------FIHLKKVCAIHNKQQVTISV------EGKDFDFLFPLPGEFQ 311
            VL  G  G            L  V         T+ +      + +  +    LPG   
Sbjct: 252 TVLGYGSTGHTPVDGVPVVAELAAVVPHGAGSVATVRLSSPLVEKAQTRELAVTLPGRHM 311

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NAL A   C   G D   V   +E    V  RFE  G  +R   +Y DYAH    +  
Sbjct: 312 ALNALGALIACTRTGQDVDAVAAGIESFGGVHRRFELRG-RARDVDVYDDYAHHPTEVRA 370

Query: 372 ILKNIRTIT---SGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE- 426
           +L   R +    SGR+I VF      R     P  G+ AL LAD  IV D     E P+ 
Sbjct: 371 VLTAAREVVAAGSGRVIAVFQPHLYSRTAEFAPQFGE-ALSLADDVIVADVYGAREQPQP 429

Query: 427 ----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
               ++ ++ + G   F+   +RI       E   + D+++  G G  T+ 
Sbjct: 430 GVTGRLISDAVAGPAAFVPDASRIA--DAVAERARRGDLVLTIGAGDITMQ 478


>gi|187777289|ref|ZP_02993762.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC
           15579]
 gi|187774217|gb|EDU38019.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC
           15579]
          Length = 873

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 148/366 (40%), Gaps = 38/366 (10%)

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++G T+T   +  +  +          A + L+++ V    +E +  GL +  L      
Sbjct: 505 KVGMTTTGGIYINNKCIDKGDTTGYYSARTVLTNKEVEVAVLELARGGLIKAGLPYDLAD 564

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKR----- 259
            G  TN+  DH+           A ++ L  E + K+   +I ADD  S  ++ R     
Sbjct: 565 VGVITNITEDHLGLGGINTLEDMAYVKSLVGEAVKKDGYVVINADDKASLNIIDRMTSKI 624

Query: 260 ---AHNAGCRVLS---------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                N    ++S         V  +   I+L+ +    N+ +  I+V          L 
Sbjct: 625 ILFTKNKNNPIVSKYLNNKNLIVYLEENIIYLQNL----NENKEIINVNKAPITLGGKLT 680

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRGGRIYVDYAH 364
             + + N + +    IA+G+D   + E LE        PGRF     N  G  + +DY H
Sbjct: 681 --YNIENIMASIAALIALGLDINTIREGLESFTNEEQNPGRFNMY--NVHGTNVILDYGH 736

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSE 423
                +++L++++ I   RII V G  GDR       +G I  +  D   V +D + R  
Sbjct: 737 NIEGYKVVLESVKKIDHKRIIGVIGVPGDRTNSSTLKVGNICGENFDYIYVKEDRDKRGR 796

Query: 424 DPEKIRAEIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHE-TVHIV 475
           +  +I   +  GI     K +++       EA++ AIE     D++++  +  E   +IV
Sbjct: 797 EHGEIAGLLKKGILEMGFKNSKLDIILDEEEALKKAIEFSEPGDLVIMFFEEFEPAANIV 856

Query: 476 TNGEKK 481
            N  KK
Sbjct: 857 KNKIKK 862


>gi|114564953|ref|YP_752467.1| UDP-N-acetylmuramate--alanine ligase [Shewanella frigidimarina
           NCIMB 400]
 gi|122298413|sp|Q07WI6|MURC_SHEFN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114336246|gb|ABI73628.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella frigidimarina
           NCIMB 400]
          Length = 485

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 41/271 (15%)

Query: 118 LAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  +  Q     +F IG    ++S   + RL T S   +A+A   
Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQADRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADES 179

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH+D +            
Sbjct: 180 DASFLHLQPMVSV-----------------------ITNIEADHMDTYGGDFEKLKTTFV 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DD   +E+M R    G +V++ G+  +   ++ +    N  Q +
Sbjct: 217 DFLHNLPFYGVAVMCIDDEVIREIMPRI---GRQVVTYGFSEE-ADVQAINFAQNGHQSS 272

Query: 293 ISVE--GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +V+  GKD  D +  LPGE  V NAL A  +     ID + +++ L +   +  RF+ +
Sbjct: 273 FTVKRHGKDNVDIVLNLPGEHNVLNALAAIAVASEDDIDDSAIVQALAEFEGIGRRFQHL 332

Query: 350 GT-NSRGGRIYV--DYAHTSNSLEMILKNIR 377
           G   +  G + +  DY H  + +   +K  R
Sbjct: 333 GEFETPNGSVMLVDDYGHHPSEVLATIKAAR 363


>gi|332283263|ref|YP_004415174.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
 gi|330427216|gb|AEC18550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
          Length = 509

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 38/211 (18%)

Query: 102 LSLFASRL-----YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           + LFA  L      G  P+ +LA+TGT+GK++V +  +Q+ Q SG ++   G        
Sbjct: 113 IELFARALADMADQGYQPK-VLAITGTNGKTTVTAMTRQLVQASGHTAKVAGNI------ 165

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                    SP  L      L++  +  V V E SS  L+  R   +   A    N+ +D
Sbjct: 166 ---------SPAALTALSDALAADDLPEVWVLELSSFQLESVRT--LSPDAAVVLNVTQD 214

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVG 271
           H+D+H + QAY  AK R    LL     AI+  DD    A + +V   A  +  R + V 
Sbjct: 215 HLDWHGSMQAYAAAKAR----LLGMSRVAIVNRDDPLVMAMADDVKALAVRSFGRDMPV- 269

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           Y+G  + L++     N      + E  DFD 
Sbjct: 270 YEGD-LGLER----SNDMLWLAAAEANDFDL 295


>gi|312136565|ref|YP_004003902.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224284|gb|ADP77140.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 510

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + N+L    + +A+G+    + E LE    + GRFE +G    G +IY+D AH 
Sbjct: 330 IPGIVNIENSLATITVGLALGLKMKYIKEKLENFKGIKGRFEKIG-EIDGVKIYMDAAHN 388

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S+E ++ N+     GR+I+            +  +G+I    ADI I +  N  + + 
Sbjct: 389 PESMEKVIGNLD--VKGRLIISLDNPDTLTTRDKFRIGRILSKKADILICSAKNETTGEI 446

Query: 426 EKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   A E+  G      I   N  ++I  AIE+  K D+++  G G
Sbjct: 447 DWNAAEEVARGAKECKTIITSNVRDSILKAIELSKKGDLILHIGPG 492


>gi|330836622|ref|YP_004411263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
 gi|329748525|gb|AEC01881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
          Length = 477

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 7/114 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR   AG +F+A+ G++ DGHL+IP AI++GA  +++  +   +  +   R+ 
Sbjct: 35  IRNLTIDSRSCDAGSLFIALPGSRSDGHLWIPDAISRGATTVLLHESRCGEFATLLDRTG 94

Query: 90  TPILVVDNT----RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           T  LV         +  + + S L G      + +TG+ GK++    +  I  +
Sbjct: 95  TWALVAKEPLHALYRMATEYVSLLNGV---TTIGITGSCGKTTTKEMLASILSQ 145


>gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
 gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
          Length = 473

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS ++R +  G +FVAI G++ DGH F+  A  QGA A+VV            + S+ P 
Sbjct: 30  VSINTRTMSVGDLFVAIKGDQFDGHQFVANAQNQGAIALVVEKEI--------VDSDLPQ 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            +V +T   L   A          I+A+TG+SGK++V   ++ I +
Sbjct: 82  WLVGDTTLALGHIAEAQRDNFLGKIVAITGSSGKTTVKGMLESILR 127


>gi|324998160|ref|ZP_08119272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Pseudonocardia sp.
           P1]
          Length = 352

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 112/298 (37%), Gaps = 51/298 (17%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI----------VVSSAYSL 79
           +  V  DSR    G +F+A+ G + DGH F   A+ +GA  +          VV+    +
Sbjct: 70  VTAVEFDSRKAGPGALFLALPGERADGHDFAAGAVTRGATGVLAGRPVDAPAVVAPPAEV 129

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQ 138
           +D    + S  P          L   A  + G  P   ++ VTG++GK+S    +  +  
Sbjct: 130 RDAHTYLGSVDPDGHGAAVLAALGRLARHVLGALPGLAVVGVTGSAGKTSTKDLLAAVLA 189

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHG 193
             G +   + P  +      +N L TP     A A +       S++G  H++   +   
Sbjct: 190 PQGRT---VAPPESF-----NNELGTPWTALRADAATRHLVLEFSARGAGHIAALCA--- 238

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------AIIY 247
           +   R+       G   N+G  H+    ++     AK  L E L P + P      A++ 
Sbjct: 239 VAPPRI-------GVVLNVGSAHLGEFGSRAGIAAAKGELVEALPPGDLPGGRGGVAVLN 291

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           ADD     +  R      RV++ G        +  CA    +  T+      F  + P
Sbjct: 292 ADDELVLAMRSRTP---ARVVTFG--------RSACADVRAEDETLDAGRPSFRLVTP 338


>gi|302537577|ref|ZP_07289919.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
 gi|302446472|gb|EFL18288.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
          Length = 464

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 8/153 (5%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           + ++K+       +V + ++G++  F   +PG    +NA+ A    +A+GI +  +   L
Sbjct: 252 VRIRKITPRGLTSEVAVVMDGREIVFTVSVPGRHYAHNAVAALTAGVALGIPADDLAAAL 311

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGC---GG 392
            K   V  R +  G  + G ++   YAH    +   L+ IR+     RI+VVF       
Sbjct: 312 GKYTGVKRRLQLKG-EAAGVQVIDSYAHHPTEMTADLEAIRSAAGDSRILVVFQPHLFSR 370

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++ GK   MG+ AL LAD ++V D  P  EDP
Sbjct: 371 TQELGKE--MGQ-ALALADASVVLDIYPAREDP 400


>gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
 gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
          Length = 431

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 19/232 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K   VS+D+R I  G +F A+ G   D + F P+A+ QGA  +V+       D    I 
Sbjct: 11  KKSTGVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVID------DPKYFIE 64

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +    +  +  K L   A+    +    I+ +TG++GK++    +  + Q       + 
Sbjct: 65  DDERYFLAKDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQT------KF 118

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +T+ +   +N +  P  +     LS      +  V + A+  G  +   +  +   G
Sbjct: 119 KTVATVGNL--NNHIGVPLTL-----LSIPEDAEMAIVEMGANKQGDIEELCEIAEPTHG 171

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             TN+GR H++           K  LF+ L   +    I + D     + KR
Sbjct: 172 FITNIGRAHLEGMGGPAGVLKTKTELFQFLRANKGTVFINSQDPVLSNMAKR 223


>gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
 gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
          Length = 448

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 18/138 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N V +D+R I +G +FVA+ G + DGH +I QA+ +GA  +V      + ++       
Sbjct: 25  LNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQAVQEGAVGVVSDRVVDVPNY------- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-------ICQRSGL 142
             + V D T  +  + A  +       ++ +TG++GK++V  ++ Q       +  R+ L
Sbjct: 78  --VKVFDTTLAY-GVIARLIRDAFKGPVVCITGSNGKTTVKDWLAQSLTDKNVLKTRANL 134

Query: 143 SSFQIGPTSTISSFAQDN 160
           ++ QIG   T+     DN
Sbjct: 135 NN-QIGVPQTLLELDADN 151


>gi|148549591|ref|YP_001269693.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
 gi|166224717|sp|A5W8P9|MURC_PSEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148513649|gb|ABQ80509.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
          Length = 482

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 169/429 (39%), Gaps = 68/429 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 73  AATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125

Query: 125 GKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  
Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
           Q +  V     +        D +    G F  L +  +++      Y  A M L      
Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234

Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+LP+ + P + Y    +S+E   RA N    V   G Q  F  L++     +++ + +S
Sbjct: 235 EILPQVKRPTVTYG---FSEEADIRAIN----VRQQGMQTHFTVLRR-----DREPLEVS 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353
           V          +PG   V NAL    +    GI    +++ L     V  RF+  G    
Sbjct: 283 VN---------MPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQGVGRRFQVYGELPV 333

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            GG + +  DY H    +  ++K +R    S R+++V+     R    R +       L 
Sbjct: 334 EGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQP--HRYSRTRDLYDDFVQVLG 391

Query: 411 D--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           D  + ++ +  P  E+  P     ++ H I       P +IE+G  +E       +L   
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERG--VELAPLVKPLLRAG 449

Query: 460 DVLVVAGKG 468
           D+L+  G G
Sbjct: 450 DILICQGAG 458


>gi|299536845|ref|ZP_07050152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727669|gb|EFI68237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 464

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  H++Y +T + Y  AK  + + + PK +  II A+D  +K++         R
Sbjct: 182 GIITNIGAHHLNYCKTLEGYIQAKGEMVDIIHPKGT-LIINAEDMNTKKI--DVSRFRGR 238

Query: 267 VLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           ++ VG      ++   IH  +        +  +  + K +D L P  GE QVYNAL A  
Sbjct: 239 LIKVGKHDSCDFRASHIHYYQ-----KGMKFILHHDRKSYDILVPGFGEHQVYNALAAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVD--YAHTSNSLEMILKNIR 377
               +G+   +  + L+   ++  + + F G N     + +D  ++ T+ SLE  LK + 
Sbjct: 294 AVHDMGMPIPVAAKQLQSFRLLKKQLQLFEGINH---SMLLDDTWSITTTSLEAALKVLN 350

Query: 378 TITSGR 383
            +  G+
Sbjct: 351 ELGDGK 356


>gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus
           denitrificans PD1222]
 gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paracoccus denitrificans PD1222]
          Length = 461

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 152/384 (39%), Gaps = 63/384 (16%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  +  VS D+R I+ G +FVA+   + DGH F+ +A+ +GA A +VS           
Sbjct: 19  RDFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARALEKGACAALVSR------IPEG 71

Query: 86  IRSNTPILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           +  + P+LVV +    L        +R+ GK    ++A+TG+ GK+S     +      G
Sbjct: 72  VAPDAPLLVVPDVLPALEALGRAGRARMRGK----VVAITGSVGKTSTKEMARVALAGQG 127

Query: 142 L-----SSF--QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSV 187
                 +S+    G   T++   +D         +  P  I   + L+ L+   V  V+ 
Sbjct: 128 RVHAAEASYNNHWGVPLTLARMPEDTDFAIVEIGMNHPGEI---EPLARLARPHVAMVTT 184

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A++H      L+    I G             + + A F   ++    ++P++ P    
Sbjct: 185 VAAAH------LEAFGAIEG-----------IAREKGAIFRGLIQPGTAIIPEDLPVTQL 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D         A +A   V+  G QG    LK    +    +V   V G+  DF+    
Sbjct: 228 LRDC--------ADDAAAIVIGFGQQGMARPLKAET-LDGVTRVRARVLGETVDFMLASA 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NA+       A G D A   +HL       GR      +   G   +D A+ SN
Sbjct: 279 GTHFVMNAVGMLAALSAAGADVAEAAKHLSDWRPPLGRGAVEDLD---GIRLIDDAYNSN 335

Query: 368 --SLEMILKNIRTITSGRIIVVFG 389
             SL   L  +  +T GR + + G
Sbjct: 336 PTSLSAGLATLARLTGGRRVAILG 359


>gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 456

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I  G +FVA+ G + DGH ++ Q   +GA   +V              ++ P 
Sbjct: 28  VSTDSRGIAPGQLFVALTGPRFDGHEYLEQVAGKGAVGALVEHEVE--------GASLPQ 79

Query: 93  LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +TRK L+ L A        + + A+TG+SGK++V   +  I +  G
Sbjct: 80  LVVLDTRKALAQLGAMNRNAFVDKPVAAMTGSSGKTTVKEMLASILRTRG 129


>gi|296140341|ref|YP_003647584.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
 gi|296028475|gb|ADG79245.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
          Length = 495

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 139/366 (37%), Gaps = 64/366 (17%)

Query: 50  VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           VG+  D    +P     G   +VV++        A I  + P LV  + R    +    +
Sbjct: 62  VGHSADALDLLP-----GGPTVVVTT-------HAAIPKDNPELVEAHRRGIPVILRPEV 109

Query: 110 YGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPS 166
                E    L V+GT GK+S  S      Q  G + SF +G     S     N      
Sbjct: 110 LADLMEGYRTLLVSGTHGKTSTTSMAVVGLQHCGGNPSFAVGGELNESG---TNAFHGTG 166

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +++A+A              + S   L Q+  D + +     TN+  DH+D+  +++ Y
Sbjct: 167 DVFVAEA--------------DESDGSLLQYSPDVVVV-----TNVEADHLDFFGSEEKY 207

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLK-- 280
             A    F E +      ++  DD  S  + +R H A    G RV   G +G    L   
Sbjct: 208 V-AVFDAFTERIRPGGTLVVCLDDPGSAALGQRTHAALRARGVRVFGYG-EGTHRDLAPD 265

Query: 281 ----------KVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGLCIAIGI 327
                     K  A     +V  S E +       +  +PG+    NA+ A    + +G 
Sbjct: 266 VTLIAELLDYKPRAEGGMLKVRFSDENRQVTERAIMLSVPGKHMALNAIAATIAVVNLGY 325

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----G 382
            +A V+  +E    V  RF+  GT   G R++ DYAH    +  +L     + +     G
Sbjct: 326 PTAKVIAGIESFGGVHRRFQLRGTED-GVRVFDDYAHHPTEVRAVLTAAAEMVAKQAVPG 384

Query: 383 RIIVVF 388
           R+IV F
Sbjct: 385 RVIVAF 390


>gi|227833490|ref|YP_002835197.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184478|ref|ZP_06043899.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|254765993|sp|C3PHF5|MURC_CORA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|227454506|gb|ACP33259.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 496

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 114/302 (37%), Gaps = 46/302 (15%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTP 165
           + L   H + +LA  GT GK+S  S      Q++GL  SF IG         Q NR  T 
Sbjct: 109 AELMEGHRQVLLA--GTHGKTSTTSMAVSALQQAGLDPSFAIG--------GQLNRAGT- 157

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                       ++ G T  +  A +   D   L     +A   TN+  DH+DY  T ++
Sbjct: 158 ------------NAHGGTGDAFVAEADESDASLLRYSPYVA-VITNIEPDHLDYFGTAES 204

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y+      F + + +    ++  +DA +    +RA   G +VL  G          V   
Sbjct: 205 YYQV-FDDFADRVVEGGYLVVCLEDAQAATTGERAAQRGIQVLGYGAGSAVDEDSAVPLA 263

Query: 286 HNKQQVTISVEG--------------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
               + T+S  G              ++  +   +PG   V N+  A       G D A 
Sbjct: 264 AEILEETVSAAGAHIRVRLALPGQAPQELSYDLHVPGHHMVLNSAAALLAGALAGGDPAE 323

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIV 386
           +   L     V  RFE+ G+  RG R++ DYAH    +  +L   R          R+I 
Sbjct: 324 LAAGLTDFTGVRRRFEYRGSE-RGIRVFDDYAHHPTEVSAVLNAARAKADAEGEGARVIA 382

Query: 387 VF 388
            F
Sbjct: 383 CF 384


>gi|124023586|ref|YP_001017893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963872|gb|ABM78628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 465

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 145/338 (42%), Gaps = 52/338 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ +  + +DSR +  G  FV +VG   +GH F+ QA+   A+A VV+     +D    +
Sbjct: 26  DQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEAQAAVVAR----KDHH-PV 80

Query: 87  RSNTPILVVDNTRKF---LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               P  +V++T +    L L   R        ++AVTG++GK++    +     RS L+
Sbjct: 81  PEGLPHWIVEDTLEAYQQLGLLHRRQLNV---PVVAVTGSAGKTTTRELI-----RSALT 132

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI 202
                P   + + A +N      P+ L +A S   +     V VE    G+ +  RL   
Sbjct: 133 -----PLGEVLASAGNNNNDVGVPLTLLQAHSDHGA-----VVVEMGMRGIGEIERLSCC 182

Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +      TN+G  H+    ++ A  +AK  +   L P+    +I A D+  ++ ++R  
Sbjct: 183 TQPDVAVITNIGNAHVGRLGSRAAIASAKCEITTCLKPR-GVIVIPAGDSLLEDALERIW 241

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNK-------------QQVTISVEGKDFDFLFPLP 307
               RV+ V  Q  + +   ++  +H +              +  + +EGK +    PL 
Sbjct: 242 RG--RVIRVAVQDNQQLEPPEIADLHRRPLPKADLVGCVDLAKGELLLEGKAYT--LPLE 297

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPG 344
           G     N ++A    +A+  +  +  E L  L V VPG
Sbjct: 298 GMHNACNLMLA----LAVARELDVCNESLSNLKVDVPG 331


>gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 454

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 47/367 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  + ++  DSR I+ G +F+ + G + DGH FI +A   GA A           FS
Sbjct: 20  EFDDVPLKQIEFDSRRIEKGDLFLPLKGER-DGHDFIEKAFENGAVAT----------FS 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               S  P ++V +  K     A     K   +++AVTG++GK+S    ++ +       
Sbjct: 69  EKEISGHPYILVKDCLKAFQELAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVL------ 122

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
                  +T  ++         + I L   + ++       V      H  D H L  I 
Sbjct: 123 ------ATTYKTYKTQGNYN--NEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIHLLSEIV 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257
           +      T +G  H+++  +++     KM++ + +    S  I+ A      D Y  E  
Sbjct: 175 QPHIAVVTLIGEAHLEFFGSREKIAQGKMQITDGM---NSHGILIAPGDPIIDPYLPE-- 229

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                    V+  G + + I +  +    N  + T +V  +      PL G++   NA++
Sbjct: 230 ------NQMVIRFG-ENQEIFVNSIEESKNSLRFTTNVLEQ--ALTLPLSGKYNAINAML 280

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA +   + +    +LE LE + +   R E+    S G  I  D Y     ++ +IL+  
Sbjct: 281 AAYVGKLLAVAEEDILEALEHIQLTGNRTEWKKA-SNGADILSDVYNANPTAMRLILETF 339

Query: 377 RTITSGR 383
             I   +
Sbjct: 340 AQIVPNQ 346


>gi|38234172|ref|NP_939939.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|48428297|sp|P61677|MURC_CORDI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|38200434|emb|CAE50122.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium diphtheriae]
          Length = 477

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 114/291 (39%), Gaps = 51/291 (17%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           + GT GK+S  S      Q +G   SF IG         Q N+  T +     KA     
Sbjct: 116 IAGTHGKTSTTSMAVVALQAAGKDPSFAIG--------GQLNKAGTNAHDGTGKAFV--- 164

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                    + S   L +++ D I ++    TN+  DH+D+ +T +AYF    ++F++  
Sbjct: 165 ------AEADESDASLLRYKPD-IAVV----TNIEPDHLDFFKTSEAYF----KVFDDFA 209

Query: 239 PKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVGYQG----------KFIHLKKVCAI 285
            +  P    ++  DD ++  + ++  +   R+   GY             F  ++ +   
Sbjct: 210 ERVQPGGTLVVCLDDPHAAALGEKFKD---RMTVRGYGSPAAAQQYPDVAFTVVEHMEVG 266

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
               +  I+V     D +  +PG   V NA  A    +  G +   +   +     V  R
Sbjct: 267 PAGTRARITVGDDTVDVIMRIPGHHMVLNACAALTAGVTAGAELERLAAGISDFSGVRRR 326

Query: 346 FEFVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTITS----GRIIVVF 388
           FEF G  S G      +Y DYAH    +  +LK  R        GR++V F
Sbjct: 327 FEFHGRVSGGAFHDAEVYDDYAHHPTEVTAVLKAARQQQEARGIGRVVVAF 377


>gi|170781769|ref|YP_001710101.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189028984|sp|B0RIJ4|MURC_CLAMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169156337|emb|CAQ01485.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 476

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 17/222 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D++ + +A+ +A +R      EL+      +I +DD  ++ V  R      R
Sbjct: 188 TNVDADHLDHYGSHEAFDDAFVRFASAASELV------VISSDDPGARRVTARIEG---R 238

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V++ G      I +  +         T++ +G        +PG     NA  A  + + +
Sbjct: 239 VVTFGEDPAADIRITDIV-TDGPVAFTLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGL 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
           G+D    +  L        RFE      RG  +Y DYAH    +   L+  RT+   GRI
Sbjct: 298 GVDPDDAIAGLAGFSGTSRRFEL-HAEVRGVSVYDDYAHHPTEVRAALEAARTVVGEGRI 356

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           I V       R Q       ++  +LAD  IV D     EDP
Sbjct: 357 IAVHQPHLYSRTQMMAGDFARVYEELADHTIVLDVFGAREDP 398


>gi|315655254|ref|ZP_07908155.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
 gi|315490509|gb|EFU80133.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
          Length = 499

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 17/194 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGC 265
           TN+  DH+D H    A F      F   L K    ++ ADDA     +++V  R    G 
Sbjct: 197 TNIEPDHLD-HWGSAAAFEQAFVDFTGRLRKGGALVLCADDAGVKRLAEQVSARGGADGP 255

Query: 266 RVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNA 315
           RV+S G+           +H  ++     + QVTI+  G+          + G+  + NA
Sbjct: 256 RVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLRIGGQHMLLNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A G    +G+D    +  L        R + VG    G RIY DY H    +   L+ 
Sbjct: 316 GGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVGERD-GVRIYDDYGHHPTEIAATLQA 374

Query: 376 IRTITS-GRIIVVF 388
            R +   GR++V F
Sbjct: 375 ARDLAGKGRLLVCF 388


>gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 822

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 150/372 (40%), Gaps = 50/372 (13%)

Query: 29  KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++  + +DSR +      +F A+   + DGH +IP+   +G  + VVS     +D ++  
Sbjct: 23  EVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRL--PEDMTSCP 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +N   L V +  K L   A R        ++ +TG++GK+ V  ++ Q+          
Sbjct: 81  DAN--FLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQL---------- 128

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           + P   +  S  + ++++  P  ++    L   S  G+    +  S  G  +     I+ 
Sbjct: 129 LSPEKNVTRSPRSYNSQIGVPLSVW---NLDERSEVGLFEAGI--SEPGEMEALQSVIQP 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FT LG  H +   + +     K++LF     K++  ++Y         M  A   G
Sbjct: 184 TIGVFTCLGDAHQENFTSYEQKCLEKLKLF-----KDAKVLVYD--------MDDARVVG 230

Query: 265 CRVLSVGYQGKFIHLKK--------VCAIHNKQQVTIS---VEGKDFDFLFPLPGEFQVY 313
           C V    ++G++    +        + ++  ++  T+     +GK+     P   E  + 
Sbjct: 231 C-VNRSAFKGEYFAWSRQRRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLA 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N++    +C+ +G+    +   +  L  V  R E     S    I   Y    NSL++ L
Sbjct: 290 NSVSCLAVCLHLGMSPETIAARMAVLEPVAMRLEVKEGRSGCTLINDSYNSDYNSLDIAL 349

Query: 374 K--NIRTITSGR 383
              N R   +GR
Sbjct: 350 DFMNRRPDCAGR 361


>gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 457

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 160/395 (40%), Gaps = 69/395 (17%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ V+ DSR ++  ++FVAI G + DGH FIPQ +  GA       A S +D      S
Sbjct: 27  EVSGVAIDSRKVEKDFLFVAIKGARVDGHDFIPQVMENGA-----LCALSEKDLGDVPYS 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRSG 141
               ++V +  + L   A          ++ +TG+ GK+S    +AS ++Q   + +  G
Sbjct: 82  ---YILVKSCEQALKDLAEYYRLALDIKVVGITGSVGKTSTKEMIASVLEQKYSVLKTEG 138

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + +IG   TI +  +++ +              +   G+            + HRL  
Sbjct: 139 NFNNEIGLPLTIFNIREEHEVA-------------VLEMGINEFE--------EMHRLAK 177

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---- 256
           + +      TN+G  H++    +     AK  +F + +   +  I+  DD     V    
Sbjct: 178 VARPDICVITNIGFCHLENLIDRDGVLRAKTEMF-DFMRDGAQIILNGDDDKLITVQNVK 236

Query: 257 ---------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                     +R       V S+G +G        C +H        +     +    LP
Sbjct: 237 GIIPVFFGLTERHDYYATDVHSLGLKG------TSCILH--------LPNGTVNANIHLP 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   VYNAL  A +  ++G+ +  + + +E L  V GR   + T+     + +D  + +N
Sbjct: 283 GAHMVYNALAGACVGYSLGLTNEEIQKGIESLLPVSGRNNLIETDD---FLIIDDCYNAN 339

Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI 401
            + M    ++ +   GR + + G  G+  + ++ +
Sbjct: 340 PVSMKASLDVLSNALGRKVAILGDMGELGEDEKAL 374


>gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 456

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 150/373 (40%), Gaps = 44/373 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +    +V  DSR I  G +F  + G + DGH FI  A   GA A +  S   L D+ 
Sbjct: 20  QFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHGFIVTAFENGAAATL--SEKELDDY- 75

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P ++VDN    L   A     K   ++ AVTG++GK++    +  +       
Sbjct: 76  -------PYILVDNVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKDMLAHLL------ 122

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
                 ++T  ++         + I L   + ++       V      H  D H L  I 
Sbjct: 123 ------STTYKTYKTQGNYN--NEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIA 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G  T +G  H+++ +++      KM++ + +  K+   ++   D    + +    N
Sbjct: 175 QPKVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDGM--KDGTLLVVPADKIINDFLPSQLN 232

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAG 320
               V+  G   + I L K+     +++ ++S E    D    LP  G++   NA++AA 
Sbjct: 233 ----VVRFG-PDEDIFLTKL----EERKDSLSFETNFLDNAIDLPVTGKYNATNAMIAAY 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           + +  G+    + +    L +   R E+    + G  I  D Y     ++ +IL+   TI
Sbjct: 284 VALKEGVTQDKIQKAFATLELTRNRTEWKKAKN-GADILSDVYNANPTAMRLILETFSTI 342

Query: 380 ---TSGRIIVVFG 389
                GR + V  
Sbjct: 343 PFNEKGRKLAVLA 355


>gi|288817395|ref|YP_003431742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786794|dbj|BAI68541.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751002|gb|ADO44485.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 422

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 127/299 (42%), Gaps = 46/299 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT GKS+V      I +    +  + G T T  S      +    P  LA  L  
Sbjct: 86  VVAITGTDGKSTVTRMTYLILREHFGNVLEGGNTGTAFS-----EIVLRDPFSLA-VLEV 139

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S QG T               L   +   G+F N  RDH+D+H + + Y ++K  +F+ 
Sbjct: 140 SSFQGKT---------------LKTFRPCCGAFLNFARDHLDWHISLEDYLHSKYNIFKH 184

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTIS 294
              +E   ++Y+     +EV+    N   R     +  K  H  L++  A    +++   
Sbjct: 185 -QQEEDFVVLYSR---QEEVV----NTPTRAKKYFFSSKDAHGFLREGRAYFMGEELFEV 236

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + K +       G     NAL +A +   +G+ S  + + L +   +P R E +G    
Sbjct: 237 SKLKIY-------GHHNYRNALASAMIAKLMGVPSETIRKVLYEFSGLPFRLELLG-EWE 288

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDL 409
           G +++ D  A T N+LE  LK   ++    +I++ G    GGD +     I+ K+ L L
Sbjct: 289 GVKVFNDSKATTVNALESALK---SMPDKSVILIAGGRDKGGDFESLYDLILQKVRLAL 344


>gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Xanthobacter autotrophicus Py2]
 gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Xanthobacter autotrophicus Py2]
          Length = 493

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR +  G  F AI G   DGH ++ +A+  GA   VV+     +D +    ++
Sbjct: 43  VTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGAGAALCVVA-----RDRADGFPAD 97

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            P+LVVD+    L+  A     +    I+AVTG+ GK++
Sbjct: 98  APLLVVDDVLAALTDVARAARARSKAQIVAVTGSVGKTT 136


>gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
 gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
          Length = 494

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 151/380 (39%), Gaps = 71/380 (18%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---- 88
           ++ DSR  + G ++VA+ G + DGH F+  A++ GA   +V     +Q     +R     
Sbjct: 30  LTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALV-----MQPLDEAVRMLAAE 84

Query: 89  -NTPILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               ++ V +T   ++  A    S L+G+    ++A+TG++GK++  + V+ +       
Sbjct: 85  LGASVIEVPDTAHAVADIAREWRSHLHGR----VIALTGSTGKTTTKNLVRDVL------ 134

Query: 144 SFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--H 197
                  ST+S+ A    Q+N L  P  +  A+       Q    V VE    G  Q   
Sbjct: 135 ------ASTLSTVATAGNQNNELGVPKTLLAAE-------QDTQAVVVEMGMRGAGQLAD 181

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
             D ++   G   N+G  HI+   +++    AK  L   L      A + ADD Y+  V 
Sbjct: 182 LCDYVRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVR 241

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---------QVTISVEGKDFDFL----- 303
           + A     RV +V + G     ++       Q         QV +  +G+    L     
Sbjct: 242 EHARLDARRVETVLFDGSAAAAERRAQADAAQTARPAVWAEQVELDEQGRPRFRLHAVGF 301

Query: 304 ------------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                         L G   V NA  A  +  A GI  A+  + L       GR E +  
Sbjct: 302 ADAPEEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVL-- 359

Query: 352 NSRGGRIYVDYAHTSNSLEM 371
            +RGG   V+ A+ +N   M
Sbjct: 360 RARGGFTVVNDAYNANPDSM 379


>gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 785

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 146/375 (38%), Gaps = 61/375 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA+AIVVS+A         I  + P ++     +   L  S +     +  + +AV G+
Sbjct: 70  RGADAIVVSTA---------IPYDNPEVIAAWDLRIPKLHRSDINAALVNEYDGIAVAGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +     R G+S     PT  +     D  L T + +  ++   YL S+   
Sbjct: 121 HGKTTTTSMIGVTLDRVGVS-----PTIIVGGEVPD--LGTNAKLGTSR---YLVSEA-- 168

Query: 184 HVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                      D+     +KL       TN+  DH+D++ T +    A  R F E +  +
Sbjct: 169 -----------DESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKII-AAFRQFIEQVDTD 216

Query: 242 SPAIIYADDAYSKEVMKRA----------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             A++  ++   + + +            H A  R  ++  +G  I      ++H +   
Sbjct: 217 GTAVLCFENEILRNIARETAHKVVSYAIDHEADYRASNIETRGSVISF----SVHERGTE 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              V       L  +PG   V NAL    +    G++   + + L + H    RF+  G 
Sbjct: 273 MGRV-------LLNIPGRHNVLNALACIAVARLAGVEFPAICDALAQFHGAKRRFQTKG- 324

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
             RG  +  DYAH    + + L   R     R+I VF      R Q  R   GK   D A
Sbjct: 325 KERGVWVVDDYAHHPTEIAVTLAAARQTNPERLICVFQPHRYSRTQLLRAEFGKCFAD-A 383

Query: 411 DIAIVTDDNPRSEDP 425
           D+ ++TD     E P
Sbjct: 384 DLLLITDVYAAGETP 398


>gi|297170215|gb|ADI21253.1| UDP-N-acetylmuramate-alanine ligase [uncultured myxobacterium
           HF0010_08B07]
          Length = 462

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 35/280 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALS 175
           +AV G+ GK++  S +  I  ++ L      PT  I      Q+N+    +  YL     
Sbjct: 109 IAVAGSHGKTTTTSLIADIFVKAKLD-----PTFIIGGKILGQENKSILGTGEYLIVEAD 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S     H++ E S                   TN+  DH+D++       ++    F 
Sbjct: 164 E-SDASFLHLNPEISV-----------------VTNIDNDHLDFYGNNLEKLDSTFLQFL 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVT 292
           E LP    AI+  D   SK+V +         +S G+  K   FI   K  +   K +V 
Sbjct: 206 ENLPFYGSAIMCIDSDRSKKVFESLSRPK---ISYGFNKKADYFIKDLKQQSSFQKFKVV 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
            S  GK+  F   L G+    NA  A  +    GI+   + E  +    V  R E+   +
Sbjct: 263 RSSTGKEITFELTLSGKHNTLNATAAFIVAQKAGINIKFIKESFKNFGGVSRRLEYKANI 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVF 388
               +   +  DY H    L+  ++ +R+   S RI +VF
Sbjct: 323 KIKDKSAILIDDYGHHPTELKATIEALRSTNPSKRICMVF 362


>gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 466

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N V  DSR ++ G++F A  G   DGH F+  A   GA A++VS      D        
Sbjct: 25  VNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVIVSRG----DCLTKAGPG 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +++V++T   L   A+         ++AVTG+ GK+S    +  +C +S   + +
Sbjct: 81  KSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDIL-ALCLQSRFKTLK 136


>gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
 gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
          Length = 467

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/380 (20%), Positives = 151/380 (39%), Gaps = 49/380 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  I  V  D+R +  G +FV +VG   DGH +I QA+  GA A + S+     D +  
Sbjct: 23  RQISITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGAVATLWSA-----DPAQA 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ------- 138
              +  ++ VD+T + L   A+         ++ VTG++GK++       + Q       
Sbjct: 78  PSDDLAVVFVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTTTKDMTAMVLQAKYRVHK 137

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G  + +IG   T+    +D +                    V  + +  S  G  +  
Sbjct: 138 TQGNYNNEIGLPYTLLQMPEDTQ--------------------VAVIEMGMSDFGEIKQL 177

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +  +    + T +G  H+++  ++     AK+ +   L P  +  ++Y  +    E   
Sbjct: 178 SEIAQPDIAAITLIGESHLEFLGSRAGIAQAKLEILYGLKP--NGVLLYPANEPLIESEM 235

Query: 259 RAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              +    + S G+        +  +++V   + K  +  +V         P+ G + V 
Sbjct: 236 PEIDQPIYLRSFGFTDHADAFAYDMVEEVDRTYFKTNLEPNVTCT-----IPVLGAYNVS 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NAL+A  +   + +     +  L    +   R E++ T+ +G R+  D Y  +  S+  +
Sbjct: 291 NALIALSVAELLDVPLEQAIFQLANFQLTANRLEWLTTH-QGARLLNDAYNASPTSVLAV 349

Query: 373 LKNIRTITSG---RIIVVFG 389
           LK++  +      R I V G
Sbjct: 350 LKSLAALNLAPGQRRIAVLG 369


>gi|291302802|ref|YP_003514080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572022|gb|ADD44987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 450

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 36/242 (14%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R  + G +FVA  G++ DGH F  QA   GA A++ S   SL             +VV
Sbjct: 35  DGRQAEPGGLFVAFAGDRVDGHDFAEQAGEAGAVAVLGSRPTSLS-----------TVVV 83

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152
            + +  +   A+ + G+  +   +  +TG+ GK+S    +  +   +        PT + 
Sbjct: 84  KDVQAAVQALAAYVVGRLRDGLTVAGLTGSQGKTSTKDLLATVVSST-------APTIAA 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + SF  +N +  P  +  A A S   +   G   V   A   GL       +        
Sbjct: 137 VDSF--NNEIGVPVTMLRADAASRFLVLEMGARRVGDIADLTGL-------VAPDVAVVL 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H+ Y  ++QA   AK  L   L P  + A++ ADD     V  R+   G  VL+ 
Sbjct: 188 NVGQSHLSYFGSRQAIAKAKGELVRGLAPGGT-AVLNADDPVV--VAMRSLTNGP-VLTF 243

Query: 271 GY 272
           GY
Sbjct: 244 GY 245


>gi|311103999|ref|YP_003976852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
           xylosoxidans A8]
 gi|310758688|gb|ADP14137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
           xylosoxidans A8]
          Length = 510

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 25/161 (15%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R    L  +R Y   P  +L VTGT+GK++V +  +Q+ + SGLS    G         
Sbjct: 117 ARALADLAETREY--RP-RLLTVTGTNGKTTVTALTRQLIEASGLSVVAAGNI------- 166

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                   SP  LA  +  L ++ +  V V E SS  L+      +   AG   N+ +DH
Sbjct: 167 --------SPAALAALMDALDAESLPQVWVLELSSFQLETTH--SLMADAGVVLNVTQDH 216

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           +D+H + +AY  AK R    LL     AI+  DD Y+ +++
Sbjct: 217 LDWHGSMEAYAQAKAR----LLKMARVAIVNRDDPYTVDMV 253


>gi|160893261|ref|ZP_02074049.1| hypothetical protein CLOL250_00807 [Clostridium sp. L2-50]
 gi|156865344|gb|EDO58775.1| hypothetical protein CLOL250_00807 [Clostridium sp. L2-50]
          Length = 436

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 159/394 (40%), Gaps = 67/394 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG--------------LSSFQI-GPTSTISSFA---- 157
           ++ + GT+GK S+ +FV  I + +G              L  FQI G     S FA    
Sbjct: 41  VVHIAGTNGKGSIFAFVGHILEDAGYVAGRYISPTIFTYLERFQINGHYMKESEFARIME 100

Query: 158 ---------QDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                    ++  L  P+   L  A++  Y   + V  V +E    G +       + + 
Sbjct: 101 TVIPVCEDMEEAGLPIPTAFELETAVAFLYFVQKKVDIVLLETGMGGKNDATNVVKQPLC 160

Query: 207 GSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               ++ RDH+ +   T Q     KM +  E    + P + Y      ++ M++     C
Sbjct: 161 TVLASISRDHMQFLGDTLQEILEQKMGILRE----QVPCVAYP----MQDEMRQIWLKKC 212

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDF-----DFLFPLPGEFQVYNALVAA 319
             + +         + + A  ++ QV    + G  F     ++   +PG +Q+YN++ A 
Sbjct: 213 DKMQI---------EPIMADTDQLQVIAEDLHGSRFCYKGQEYELGIPGIYQIYNSITAI 263

Query: 320 GLCIAI----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +C  I     + +  +   L+K  +  GRF+ +         Y+D AH       + +N
Sbjct: 264 EVCNCIKKQFDLKNVSIKNGLKKT-LWEGRFQKIKDVP---LTYIDGAHNEGGWRSLREN 319

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           IR   +GR + ++ CG   D+    ++  +A   + I  VT DNPR+ D E I AE    
Sbjct: 320 IRAYFTGRPL-IYICGVLADKEYEKMVDIMAPFASFIITVTPDNPRALDKE-ILAECYRS 377

Query: 436 IPGFIEKGNRIEAIRTAIEMLNK---QDVLVVAG 466
               ++    + A +   E L +   + V+VV G
Sbjct: 378 YGKPVDTAEDVFAAQRQAETLAQELTEPVIVVFG 411


>gi|70732383|ref|YP_262139.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf-5]
 gi|109892722|sp|Q4K6J4|MURC_PSEF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68346682|gb|AAY94288.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 484

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 173/431 (40%), Gaps = 72/431 (16%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 73  AANADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  
Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHL 182

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
           Q +  V     +        D +    G F  L +  +D+      Y  A M L      
Sbjct: 183 QPLVAVVTNIDA--------DHMATYDGDFNKLKKTFVDFLHNLPFYGLAVMCLDDPVVR 234

Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+LP+ + P + Y    +S+E   RA N    V   G Q  F  L++     +++ + +S
Sbjct: 235 EILPQVKRPTVTYG---FSEEADVRAIN----VRQQGMQTFFTVLRR-----DREPLDVS 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGT- 351
           V          +PG   V N+L  A +CIA   GI    +++ L     V  RF+  G  
Sbjct: 283 VN---------MPGNHNVLNSL--ATICIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 331

Query: 352 NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              GG + +  DY H    +  ++K +R      R+++V+     R    R +       
Sbjct: 332 PVEGGNVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQP--HRFSRTRDLYDDFVQV 389

Query: 409 LAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLN 457
           LAD  + ++ +  P  E+  P     ++ H I       P +IE+G  ++       +L 
Sbjct: 390 LADANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYIERG--VDLAPLVKPLLR 447

Query: 458 KQDVLVVAGKG 468
             D+L+  G G
Sbjct: 448 AGDILLCQGAG 458


>gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. ND132]
 gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans ND132]
          Length = 462

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E  + EV +DSR ++ G +F  I G   DGH F   A A+GA A+V S      D   
Sbjct: 20  FEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEFAALAAAKGACAVVASRMIGEID--- 76

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-----QQICQR 139
                 P+++V +TR  L   A+         ++AVTGT+GK++V   +     Q+    
Sbjct: 77  -----APVIMVRDTRTALGRLAACWRDTCGAKLVAVTGTAGKTTVKEMLFAVASQKFATA 131

Query: 140 SGLSSF--QIG-PTSTISSFA 157
               +F  QIG PTS + + A
Sbjct: 132 KNYRNFNNQIGLPTSMLKASA 152


>gi|312898960|ref|ZP_07758348.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
 gi|310620122|gb|EFQ03694.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
          Length = 462

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 167/438 (38%), Gaps = 97/438 (22%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +++SSA   + ++  A  +   PI+      +  +L     YGK     +AV G  G
Sbjct: 67  AQVVIISSAIRDTNEELEAARKRQLPII-----HRADALVHIMTYGK----AIAVAGAHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGV 182
           K++  S + Q+   S     ++ PT  I     + Q N +       +A+A         
Sbjct: 118 KTTTTSMLGQVFYES-----KMDPTLVIGGEVDYLQGNSVLGKGEYVIAEA--------- 163

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                E+    L +H    +       TN+  DH+D++ T +    A       L P+  
Sbjct: 164 ----DESDGTFLKEHPHIAV------VTNIDADHMDHYGTIENVIQAFKDFIHLLDPQTG 213

Query: 243 PAIIYADD----AYSKEVMKR------AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
            A++ AD+    A+  EV +          A  +  ++GY +GK I       ++   + 
Sbjct: 214 LAVLCADNDKIRAFLPEVKRPFVTYAIEAPADYKAKNIGYHEGKLIF-----DVYKHDEF 268

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             SVE         +PG   V NAL    + ++ GI    +   L + H    RF+  G 
Sbjct: 269 LGSVE-------LNVPGNHNVLNALATVAVSLSCGISFEDIAAALSRFHGAKRRFQTKG- 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI------ 405
           +  G  +  DYAH    +   L   R++ + R++ +F       Q  R    ++      
Sbjct: 321 HVNGIWVVDDYAHHPTEIHATLAAARSMGTHRVVCLF-------QPHRYTRTQLLAEEFS 373

Query: 406 -ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-------EKGNRIEAIRTAIEMLN 457
            A   AD  I+TD     EDP       I GI G           G  +E I T  E+L 
Sbjct: 374 KAFTCADKLILTDVYSAGEDP-------IPGIGGTFLTDKVKSATGQDVEYIGTKEELLE 426

Query: 458 -------KQDVLVVAGKG 468
                   +D+++  G G
Sbjct: 427 YLRKNARPRDLILTMGAG 444


>gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 35/221 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R  + G +FVA  G   DGH +  QA   GA A++ S   +L           P +VV
Sbjct: 32  DGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGAVAVLGSRPTAL-----------PTVVV 80

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           ++ R  L   A+ +  +  E   ++ VTG+ GK+S    +  +     LSS       TI
Sbjct: 81  EDARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAV-----LSS----AAPTI 131

Query: 154 SSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH---VSVEASSHGLDQHRLDGIKLIAGSF 209
           ++    +N L  P        L+ L +   T    V + A   G      D + L     
Sbjct: 132 ATKGNLNNELGVP--------LTMLRAGAATRFLVVEMGARRIGDLAKLTDLVPLDVAVV 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            N+G  H+    ++ A    K  L   L+P  + AI+ ADD
Sbjct: 184 LNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGT-AILNADD 223


>gi|242278166|ref|YP_002990295.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio salexigens
           DSM 2638]
 gi|259509766|sp|C6BYG5|MURC_DESAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|242121060|gb|ACS78756.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio salexigens DSM
           2638]
          Length = 470

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 23/226 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKEVMKRAH 261
           TN+ +DH+D++  Q+A  +   R F   +P     ++  DD        +  +  M    
Sbjct: 179 TNVDKDHLDFYGGQEA-IDESFRKFMNSIPFYGMNVVCGDDPGVQRLLPSIKRPCMTYGL 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N G R+     +G+ +     C + +  +V +  E    +     PG+  V NAL A G+
Sbjct: 238 NKGNRL-----RGEILS----CEVRSLFKVYLD-EKLLGEVSLAQPGKHNVLNALGAIGV 287

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  G+D  ++L  L     V  RFE  G  S+G  +  DY H    ++  ++  ++   
Sbjct: 288 SLEAGLDPKVILSGLSNFMGVGRRFEKKG-ESKGILVVDDYGHHPAEIQATIETAKSCFP 346

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP 425
            R +VV      R      + G+     + AD  ++T+  P SEDP
Sbjct: 347 QRRLVV-AFQPHRFTRTEALFGEFCKTFEKADELLLTEIYPASEDP 391


>gi|149927133|ref|ZP_01915390.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
 gi|149824072|gb|EDM83293.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
          Length = 466

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 103/253 (40%), Gaps = 30/253 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S V  I     L+  ++ PT     F    RL +      A A + L
Sbjct: 108 IAVAGTHGKTTTTSLVASI-----LAEGKLDPT-----FVIGGRLNS------AGANAKL 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +     V  + S    D   L+ + +IA   TN+  DH++ +    A        F + 
Sbjct: 152 GTGEFMVVEADES----DASFLNLMPVIA-VITNIDADHMETYGHDFARLKQAFVEFTQR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296
           LP    A +  DD   +E+M         +++ G   +  I    V A   + + T+  E
Sbjct: 207 LPFYGVAAVCVDDPCVREIMPFVSKT---IVTYGLSEQAQIRAVNVQACQGQMKFTVLRE 263

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNS 353
            +   D    LPG+  V N+L A  +   IG+    ++  LEK + V  RF+  G     
Sbjct: 264 DEAPLDITLNLPGDHNVRNSLAAIAVATEIGVSDEAIVAALEKFNGVGRRFQHYGEVAAK 323

Query: 354 RGGRIYV--DYAH 364
            GG   V  DY H
Sbjct: 324 EGGHFLVVDDYGH 336


>gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
 gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
          Length = 476

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 133/351 (37%), Gaps = 83/351 (23%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           +  + V  DSR+++   +F+ + G  +DGH++I  A+  GA+  VV   Y  ++ +A + 
Sbjct: 36  KAFSSVVMDSRNVKNNSLFIPLRGENQDGHVYIEPALKNGAKFFVVDFDYLDENETALLS 95

Query: 87  ---RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                +   + V N  K L   A     K P N+  + +TG+SGK++    +  I  +  
Sbjct: 96  LCKNYDASCVAVKNNLKALQDAARYYLSKFP-NLYKIGITGSSGKTTTKEILASIYSKK- 153

Query: 142 LSSFQIGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    +T+S+    N  T  P  ++  +           H   EA    L  +R  
Sbjct: 154 --------YNTVSTKGNLNSETGLPLSVFEVRP---------EH---EAGIFELGMNRKG 193

Query: 201 GIKLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEEL---------------- 237
            I  IA          TN+G  HI    T+QA    K  +F                   
Sbjct: 194 EIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFKDDSLGFIPECEFTDF 253

Query: 238 ---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P  S   +  +D+    ++++  +AG     + Y+G+                   
Sbjct: 254 LKDIPHGSVFTVSDNDS---SLVQKVEDAGVLGSKIFYKGE------------------- 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                 + LFPLPG + V NAL+   L    G  +  +   LE +  + GR
Sbjct: 292 ------EILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGR 336


>gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus helveticus H10]
          Length = 455

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 43/328 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G +FV + G + DGH F+  AI+ GA A +    +  +        N
Sbjct: 24  ITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PKN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ VDN    +   A     K    ++ +TG++GK++    +  +  +     F +  
Sbjct: 77  ITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   ++F  +N +  P  I     L    +  +  + +     G   H  +         
Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA----G 264
           T +G  HI++  ++    +AKM + + L  +E    IY  D+   +E  K+   A    G
Sbjct: 184 TMIGEAHIEFFGSRDKIADAKMEITDFL--REDGEFIYNGDEPLLQERAKKLDQAKATFG 241

Query: 265 CR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            R    V + G++    H             T ++   +  F  P+ G+  V NA+ A  
Sbjct: 242 FRDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAIS 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +    G     +   L        R E+
Sbjct: 290 VGHHFGESDEEIASSLSNFKPTANRMEW 317


>gi|302546148|ref|ZP_07298490.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463766|gb|EFL26859.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 486

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 26/166 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-T 163
            A RL G      LAVTGT+GK++    +  I + +GL +  +G    I     D  L  
Sbjct: 113 LAWRLRGPDSPPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVG---NIGVSLLDIVLGE 169

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           TP  +                ++VE SS+ L  H    ++  +G+  NL  DH+D+H + 
Sbjct: 170 TPYDV----------------LAVELSSYQL--HWAPSLRAHSGAVLNLAPDHLDWHGSM 211

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL 268
            AY   K R++E     +   +  A D  ++++++ A    GCR +
Sbjct: 212 AAYAADKGRIYEG---NQVACVYNAADPATEDLVRAADVEEGCRAI 254


>gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 35/221 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R  + G +FVA  G   DGH +  QA   GA A++ S   +L           P +VV
Sbjct: 32  DGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGAVAVLGSRPTAL-----------PTVVV 80

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           ++ R  L   A+ +  +  E   ++ VTG+ GK+S    +  +     LSS       TI
Sbjct: 81  EDARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAV-----LSS----AAPTI 131

Query: 154 SSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH---VSVEASSHGLDQHRLDGIKLIAGSF 209
           ++    +N L  P        L+ L +   T    V + A   G      D + L     
Sbjct: 132 ATKGNLNNELGVP--------LTMLRAGAATRFLVVEMGARRIGDLAKLTDLVPLDVAVV 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            N+G  H+    ++ A    K  L   L+P  + AI+ ADD
Sbjct: 184 LNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGT-AILNADD 223


>gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN]
 gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN]
          Length = 826

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 147/359 (40%), Gaps = 40/359 (11%)

Query: 27  ERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           E +I+ + +DSR +      +F A+   + DGH +I +   +G    VV     L D  +
Sbjct: 21  EAQISFILTDSRSLCFPEETLFFALRSERNDGHHYIDELYHRGVRNFVVEQ---LPDAFS 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +I      L VDN+   L    +         I+ +TG++GK+ V  ++ Q      L S
Sbjct: 78  SIYKQANFLQVDNSLLALQQLTTWHRSAFTIPIVGITGSNGKTMVKEWLSQ------LLS 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F    T +  S+  ++++  P  ++L   L+  S  G+    +  S  G  +     I+ 
Sbjct: 132 FDHNVTRSPKSY--NSQIGVPLSVWL---LNESSEIGIIEAGI--SKRGEMEALQKIIQP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263
             G  T+LG  H +   + +     K+ LF     K++ A++Y  DDA + + ++     
Sbjct: 185 TIGVLTSLGAAHQENFSSIEEKCKEKLLLF-----KDTQALVYQMDDAIAAKCIEDFSYD 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--------GKDFDFLFPLPGEFQVYNA 315
           G     +G+  K           +K   T ++E        GK   F  P   +  + N 
Sbjct: 240 GTL---LGWSEKNKDAALFVEKISKDTTTSTIEYCWQTATKGK---FTLPFIDDASIQNC 293

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           +  A + + +G+    + E +  L  V  R E V     G  +  D Y    NSL++ L
Sbjct: 294 ITCAAISLYLGMKPETLAERMPMLEPVAMRLE-VKEGQHGCTLINDSYNSDINSLDIAL 351


>gi|115524118|ref|YP_781029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisA53]
 gi|115518065|gb|ABJ06049.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisA53]
          Length = 482

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%)

Query: 102 LSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           + LF        PE   +A+TGT+GKS+  + +  + +++G  +   G   T        
Sbjct: 112 VELFCRERLRHAPEAPFVAITGTNGKSTTTALIAHLMRQAGYDTQMGGNIGT-------- 163

Query: 161 RLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                        LS    Q G  HV +E SS+ +D      +    G   N+  DHID 
Sbjct: 164 -----------AILSLQPPQNGRVHV-IEMSSYQIDL--TPSLDPSVGIMLNVTEDHIDR 209

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           H + + Y   K RL   +LP+   AII  DD + +++  R   AG  VL V  +G  
Sbjct: 210 HGSIENYAAVKERLVAGVLPQGC-AIIGVDDGFGRDMADRLERAGQPVLRVSVKGPL 265


>gi|328955358|ref|YP_004372691.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
 gi|328455682|gb|AEB06876.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
          Length = 473

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 108/287 (37%), Gaps = 44/287 (15%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H    +AV GT GK++ AS    +  R GL  SF IG    +  +  + R       ++A
Sbjct: 113 HGCTTIAVAGTHGKTTTASMCATMLDRMGLDPSFLIG--GIVEGYKTNGR-NGSGTYFVA 169

Query: 172 KA------LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           +A        YL  + V   +VEA                         DH+D H    A
Sbjct: 170 EADESDSSFLYLEPRVVVVTNVEA-------------------------DHLD-HYGSLA 203

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
                   F  L+ ++   +   DD   K++ + A +   R+++ G+  +   + +VC  
Sbjct: 204 EIENTFAQFMSLVGEQGVIVACGDD---KQLYELARSTSKRIVTYGFDARNDIVCEVCDD 260

Query: 286 HNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              Q     +   D       +   PG   + NA  A G+  A+G+D+A     L     
Sbjct: 261 RCAQASGCRIRFPDGRLHEVDIAHNPGRHNMLNASAAMGVAFALGLDTAAAARALSTFEG 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           V  RF  VG +  G  +  DY H    ++  L   R +    I VVF
Sbjct: 321 VRRRFTRVG-DVCGVTVVDDYGHHPTEIKATLAAARGLDYRHIDVVF 366


>gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A]
 gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A]
          Length = 849

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 150/356 (42%), Gaps = 32/356 (8%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           RE  ++ + +DSR +      +F A+   + DGH +I +  A+G    VV     L    
Sbjct: 43  REGSVSFLLTDSRSLCFPEETLFFALRTERGDGHNYISELYARGVRFFVVEE---LPCEW 99

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             + S    L V ++++ L   A+    +    I+ VTG++GK+ V  ++ Q      L 
Sbjct: 100 EKLYSQASFLKVSSSKRALQRLAACHRDEFHIPIVGVTGSNGKTVVKEWLYQ------LL 153

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           SF    T +  S+  ++++  P  ++L   L+  +  G+    +  S  G  +   + IK
Sbjct: 154 SFSKRVTRSPRSY--NSQIGVPLSVWL---LNEQTQVGIFEAGI--SKKGEMEVLRNIIK 206

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  T+LG  H +   + +     K+RLF ++       ++Y  D   K +       
Sbjct: 207 PTIGVLTSLGDAHQENFVSMEEKCREKLRLFTDV-----DVLVYPYD--DKLIRSCVDTL 259

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVA 318
             +   +G+  K   +        K +++ ++     + K+  +  P   +  +Y+++  
Sbjct: 260 SFKGKGLGWSVKDASVSLFIKDIKKSELSTTIAYIWKQEKEDSYTIPFIDDASIYDSITC 319

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
             LC+ +G+   ++   +  L  V  R E V    RG  +  D Y    NSL++ L
Sbjct: 320 LALCLYLGVKKEVLKARMPLLEPVAMRLE-VKEGQRGCTLINDSYNSDINSLDIAL 374


>gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
 gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 458

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L  L       LI + ++F         + VS+DSR I  G +F+A+ G + DGH ++
Sbjct: 5   LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+
Sbjct: 56  AEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107

Query: 121 TGTSGKSSVASFVQQICQ 138
           TG+SGK++V   +  I +
Sbjct: 108 TGSSGKTTVKEMLASILR 125


>gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 484

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 150/387 (38%), Gaps = 60/387 (15%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F   W E+       DSR I  G +FV + G + DGH FI  A   GA   +   
Sbjct: 43  NDVSLFEDTWLEK----AEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGATVTL--- 94

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S    +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 95  -------SEKEVANHPYILVDDVLSAFQALAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 147

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194
           +      ++++   T        +N +  P  +           +G   + +E    H  
Sbjct: 148 LLS----TTYKTYKTQG----NYNNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 192

Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADD 250
           D H L  +     +   L G  H+ + + +      KM++ + + P     +PA    +D
Sbjct: 193 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPVSLLLAPADPIIED 252

Query: 251 --AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPL 306
                K+V++    A   V  +              I  K  +T      G+  D   P+
Sbjct: 253 YLPTDKKVVRFGSGAELEVTDL--------------IERKDSLTFKANFLGQALD--LPV 296

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G++   NA++AA + +  G+    + +  + L +   R E+    + G  I  D Y   
Sbjct: 297 TGKYNATNAMIAAYVGLQEGVSEEQIRQAFQNLELTRNRTEWKKA-ANGADILSDVYNAN 355

Query: 366 SNSLEMILKNIRTITS---GRIIVVFG 389
             ++++IL+    I +   G+ I V  
Sbjct: 356 PTAMKLILETFSAIPANEGGKKIAVLA 382


>gi|309798581|ref|ZP_07692856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
 gi|308117817|gb|EFO55218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
          Length = 162

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 16/136 (11%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +  DSR  Q   +F   V        F+  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNYSDVVFDSICYDSRKAQENCLF--FVKGAAFKKEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AIAQG    V       QD+   I    P++VV + +K +SL A   YG   E   ILA 
Sbjct: 66  AIAQGLGWYVAE-----QDYEVDI----PVIVVSDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQI 136
           TGT GK++ A F   I
Sbjct: 117 TGTKGKTTAAYFAYNI 132


>gi|255020014|ref|ZP_05292087.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970543|gb|EET28032.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
          Length = 465

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 121/331 (36%), Gaps = 44/331 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V+SSA    +          I V+        L   R         +AV GT G
Sbjct: 63  RGADVVVISSAVPESNPEVQAAREQRIPVIRRAEMLAELMRFR-------QGIAVAGTHG 115

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  I   + L  +F IG    + S   + RL      YL        +  +  
Sbjct: 116 KTTTTSLVASILAAADLDPTFVIG--GLLKSAGTNARLGDGE--YLVAEADESDASFLYL 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELLPK 240
             V A    +D   +D      GS   L R  + + Q    Y  A +     L   L+P+
Sbjct: 172 APVMAVVTNIDADHMD---TYGGSLEELRRAFLQFLQRLPFYGLAVLCTDDPLVRGLIPE 228

Query: 241 -ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             SP + Y   A +    +  H  G R                    ++ +V   V+G+ 
Sbjct: 229 LRSPVLGYGFSASADLQARHWHQVGGR--------------------SRFEVWRRVDGEA 268

Query: 300 FDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +L     +PG   V NAL A G+   +G+ +  +   L     V  RFE +G  + G 
Sbjct: 269 VHWLDAELAIPGRHNVLNALAAIGIASKVGVRAETIQAALADFRGVGRRFEILGDFA-GI 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            I  DY H    LE  L   R +   R IV+
Sbjct: 328 TIVDDYGHHPRELEATLAAARDMWPDRPIVL 358


>gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
 gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
          Length = 458

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L  L       LI + ++F         + VS+DSR I  G +F+A+ G + DGH ++
Sbjct: 5   LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+
Sbjct: 56  AEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107

Query: 121 TGTSGKSSVASFVQQICQ 138
           TG+SGK++V   +  I +
Sbjct: 108 TGSSGKTTVKEMLASILR 125


>gi|304396561|ref|ZP_07378442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
 gi|304356070|gb|EFM20436.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
          Length = 438

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 42/238 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I                   ALS 
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIG----------------LPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L S    +V +E SS  L+      +K  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LQSPAQLYV-LELSSFQLETTY--SLKAAAATVLNVSEDHMDRYPLGMQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    I+ ADDA +  V      A  R +S G      HL       NKQQ +I +
Sbjct: 205 ----NAQICIVNADDALTMPV----RGADTRCVSFGVDFGDYHL-------NKQQGSIWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             K    L      + G+    NAL A  L  A+G+  A  L  L   + +  RF+ V
Sbjct: 250 RVKGEKVLNTAEMKMVGQHNYTNALAALALADAVGLPRASSLAALTHFNGLAHRFQLV 307


>gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 453

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 135/320 (42%), Gaps = 34/320 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++ DSR ++ G +F+  +G   DGH FI  A  +GA A     + SL+D      S
Sbjct: 24  EITGIAIDSRKVKQGDLFIPFLGENVDGHNFIESAFEKGAAA-----SLSLKD---DFVS 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              I+ V+++ + +   A           +A+TG++GK++    +  +      + +++ 
Sbjct: 76  ENNIIYVNDSYEAIQTLAKHYLESLNAKTIAITGSNGKTTTKDIITSVLS----TKYKVH 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
            T    +F  +N L  P  I  A   S +       + +E  +    Q  LD + KL+  
Sbjct: 132 KTQ--GNF--NNELGVPITILAAPEDSEI-------LVLEMGADDFGQ--LDFLSKLVEP 178

Query: 208 SF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +   TN+G  HI++ ++++    AK  +    + K+   +   D+   K ++  +    
Sbjct: 179 DYTVITNIGESHIEFFKSREGIAKAKFEITNG-MKKDGYFVYNGDEVLIKTLVDSSEINA 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  Y    I L+      +K    +++   D  +   L G+  +YN + A  +   
Sbjct: 238 TSCGENSYND--IILESYTITRDKIDFKLNI--SDEQYFTKLKGKHNLYNIMFATAIASK 293

Query: 325 IGIDSALVLEHLEKLHVVPG 344
           IG+ +  + + +E    + G
Sbjct: 294 IGLTNEEIHKAIENTVEITG 313


>gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 455

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 43/328 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G +FV + G + DGH F+  AI+ GA A +    +  +        N
Sbjct: 24  ITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ VDN    +   A     K    ++ +TG++GK++    +  +  +     F +  
Sbjct: 77  ITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   ++F  +N +  P  I     L    +  +  + +     G   H  +         
Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA----G 264
           T +G  HI++  ++    +AKM + + L  +E    IY  D+   +E  K+   A    G
Sbjct: 184 TMIGEAHIEFFGSRDKIADAKMEITDFL--REDGEFIYNGDEPLLQERAKKLDQAKATFG 241

Query: 265 CR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            R    V + G++    H             T ++   +  F  P+ G+  V NA+ A  
Sbjct: 242 FRDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAIS 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +    G     +   L        R E+
Sbjct: 290 VGHHFGESDEEIASSLSNFKPTANRMEW 317


>gi|224476285|ref|YP_002633891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254766056|sp|B9DPR3|MURD_STACT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222420892|emb|CAL27706.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 449

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 123/291 (42%), Gaps = 55/291 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRS---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           I+AVTGT+GK++V S +  +  +S   GL S  IG  +  S  AQ+           AK 
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFDKSRQTGLLSGNIGYVA--SKVAQE-----------AKP 159

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             YL    +T +S      G++Q+R   I +I    TN+   H+DYH T + Y NAK R+
Sbjct: 160 EDYL----ITELS-SFQLLGIEQYR-PHIAII----TNIYSAHLDYHGTLEEYRNAKRRI 209

Query: 234 FEE------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           ++       L+   +   +   D    +V     +    V  +  +  +I L  +  IH 
Sbjct: 210 YKNQTEDDFLICNYNQRHLIETDGLKSKVY--YFSTSQEVDGIYVKDGYIMLNGLRLIHK 267

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              V              LPGE  + N L A    +  G+    V+  L     +  R +
Sbjct: 268 DDIV--------------LPGEHNLENILAAVLAAVLGGVSIDAVIATLTSFSGIKHRLQ 313

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQG 397
           ++G+N +  + Y D +  +N+L         + S    +++ CGG DR  G
Sbjct: 314 YIGSN-KTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDRGNG 358


>gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 458

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L  L       LI + ++F         + VS+DSR I  G +F+A+ G + DGH ++
Sbjct: 5   LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+
Sbjct: 56  SEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107

Query: 121 TGTSGKSSVASFVQQICQ 138
           TG+SGK++V   +  I +
Sbjct: 108 TGSSGKTTVKEMLASILR 125


>gi|15837400|ref|NP_298088.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa 9a5c]
 gi|23821887|sp|Q9PF80|MURC_XYLFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9105694|gb|AAF83608.1|AE003919_19 UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa 9a5c]
          Length = 477

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 131/334 (39%), Gaps = 48/334 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I              +  A A + L +  
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL+ +  +    TN+  DH++ +    +        F + LP  
Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    EV + A  A   V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDD---PEVAELAGKARRHVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
            R+  DY H    LE +   +R      R++V F
Sbjct: 338 VRLIDDYGHHPRELEAVFAAVRGGWPDKRLVVAF 371


>gi|254230420|ref|ZP_04923800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262395261|ref|YP_003287115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|151937053|gb|EDN55931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262338855|gb|ACY52650.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
          Length = 437

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 47/308 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL    +G    I   A D  L   + +Y+ +  S+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMVKAAGLD---VGVGGNIGVPALD-LLEQDADLYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E +S          +KL A +F NL  DH+D +Q    Y  AK+R+F+ 
Sbjct: 166 ---------QLETTS---------SLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFDH 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVT 292
                + A++  DD   +E    A      +++ G   +   L+    +   + + Q+V 
Sbjct: 208 ----AALAVVNRDD---QETFPDAE---MPLVTFGSDNQDFGLEVDGNRTWLLDHGQRVV 257

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            S E K       L G+  + NALV   L  A G+D    L  L+    +  R + V  N
Sbjct: 258 ASDELK-------LVGKHNLSNALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN 310

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGK-RPIMGKIALDLA 410
              G  +V+ +  +N    +       ++G++ ++V G G   D    +PI   + L L 
Sbjct: 311 Q--GVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFSPLKPIFATLNLQLC 368

Query: 411 DIAIVTDD 418
                 DD
Sbjct: 369 CFGADGDD 376


>gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas aeruginosa PAb1]
          Length = 458

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L  L       LI + ++F         + VS+DSR I  G +F+A+ G + DGH ++
Sbjct: 5   LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+
Sbjct: 56  SEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107

Query: 121 TGTSGKSSVASFVQQICQ 138
           TG+SGK++V   +  I +
Sbjct: 108 TGSSGKTTVKEMLASILR 125


>gi|222151664|ref|YP_002560820.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus
           JCSC5402]
 gi|254766009|sp|B9E7F6|MURC_MACCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222120789|dbj|BAH18124.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus
           JCSC5402]
          Length = 431

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 130/325 (40%), Gaps = 59/325 (18%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F  + I +G   I+  +A++  D    +R++   L V     FL  F S+         +
Sbjct: 53  FNQENIKEGM-TIIAGNAFN-DDHEEIVRAHELGLTVTRYHDFLGNFMSQY------TSV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG+ GK+S    +  +      +S+ IG  + +           P   Y A    + +
Sbjct: 105 AVTGSHGKTSTTGLLSHVMNGDKKTSYLIGDGTGMG---------MPGSEYFA----FEA 151

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +   H    +  + +               TN+  DH DY  +    FNA    F+E+ 
Sbjct: 152 CEYRRHFLSYSPDYAI--------------ITNIDFDHPDYFASMSDVFNA----FQEMT 193

Query: 239 PKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVT 292
            K   AI+   DD   +++           + + Y G F    KV A + K      Q  
Sbjct: 194 KKVKKAIVACGDDENLRDIEAD--------IPIYYYG-FKEDNKVVAKNMKTTPQGTQFE 244

Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+ FD F+ P+ G+ QV NAL    +C   G+D+A V   L     V  RF     
Sbjct: 245 VYIDGELFDTFVTPMYGDHQVLNALAVITICHLEGLDNAAVKHALSTFGGVKRRF---SE 301

Query: 352 NSRGGRIYV-DYAHTSNSLEMILKN 375
             +  +I + DYAH    ++  L++
Sbjct: 302 KIQDEQILIDDYAHHPTEIKATLQS 326


>gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 471

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 17/159 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS----SAYSLQDFSATIRS 88
           V +DSR ++ G +F  I G + DGH F  + + +GA A+V      S   +QD     R 
Sbjct: 29  VQTDSRCVRDGELFFCISGERFDGHTFAAEVLEKGACAVVAERPPFSMDEMQD-----RQ 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF--- 145
           + P+L+V +T   L   A          +  +TGT+GK++V   +  +    G ++    
Sbjct: 84  DRPVLIVPDTVAALGRLALHHRMGASAVVTGITGTAGKTTVKELLAHVLSVRGATARNHL 143

Query: 146 ----QIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
               QIG P S +++   +      + I  A  +  L S
Sbjct: 144 NRNNQIGLPLSMLAATGDERFWVMEAGISQAADMDELGS 182


>gi|220904380|ref|YP_002479692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868679|gb|ACL49014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 472

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 139/359 (38%), Gaps = 52/359 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR    G +FV + G++ DGH F   A+ QGA A++ +              N
Sbjct: 26  LTSVVTDSRDAGPGALFVCVPGSRVDGHDFAAAAVRQGAAAVLAAGPLP--------GIN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVV +T K L   A     +    ++AVTGT+GK+++   + Q+          +G 
Sbjct: 78  VPVLVVPDTVKALGQLAGLWRDRTKARVVAVTGTAGKTTLKEVLAQV--------LSLGG 129

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLI-- 205
            +  ++   +N++  P  +         ++   G++    +     L       I ++  
Sbjct: 130 KTARNAMNHNNQIGMPRAVLGTDGDEKFWIMEAGISQ---QGDMDDLGSVLRPDIAVVLN 186

Query: 206 --AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G    LG   + +H         K RL  + L K    ++ AD     ++++ A   
Sbjct: 187 AGTGHTEGLGEKGVAWH---------KARLL-KYLAKGGKGLVCAD---YPDLVREARAT 233

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----------VEGKDFDFLFPLPGEFQV 312
              +      G+    + V A    Q   ++           + G++FD   P  G +  
Sbjct: 234 ETDICFFSGSGRDAEFRAVYAGAAPQGAAVTPSDAYGLYRLWLGGREFDVTAPFRGAYGA 293

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N    A +   +G+D   + + L +  +   RF  V     G  + +D  + +N L M
Sbjct: 294 ENVAAVAAVAHMLGLDLQAIRQGLAQARMPAQRFNQV---QAGSWLLIDDTYNANPLSM 349


>gi|297161285|gb|ADI10997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           bingchenggensis BCW-1]
          Length = 479

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 126/318 (39%), Gaps = 50/318 (15%)

Query: 64  IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + QG E IV +  +  S   F A   +  P+             A RL G      LAVT
Sbjct: 70  LPQGTELIVTTPGWKPSSPLFLAAAEAGVPVW-------GDVELAWRLRGADAPPWLAVT 122

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GK++    +  I + +GL +  +G                   I ++     L  + 
Sbjct: 123 GTNGKTTTVRMLAAILEAAGLRTAAVGN------------------IGVSLLDVVLGDEP 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              ++VE SS+ L  H    ++  +G+  NL  DH+D+H +  AY   K R++E      
Sbjct: 165 YDVLAVELSSYQL--HWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYE----GN 218

Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVL--SVGYQG-------KFIHLKKVCAIHNKQQ 290
             A +Y  AD A    V       GCR +  ++G  G       + I + +    + ++Q
Sbjct: 219 QVACVYNVADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFVANRQKQ 278

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                E  D +     P    + NAL AA L  A G+    V + L      P R E V 
Sbjct: 279 AQELAEVSDVN----PPAPHNIANALAAAALARAFGVPPTAVRDGLRAFRPDPHRVEHVA 334

Query: 351 TNSRGGRIYVDYAHTSNS 368
             +  G  YVD +  +N+
Sbjct: 335 DVA--GVAYVDDSKATNT 350


>gi|91205696|ref|YP_538051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii RML369-C]
 gi|118595687|sp|Q1RI52|MURD_RICBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91069240|gb|ABE04962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia bellii
           RML369-C]
          Length = 450

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 34/241 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N+LAVTGT+GKS+  + +  I   +GL     G                  P+  AKA  
Sbjct: 105 NLLAVTGTNGKSTTTALISHILSDNGLDYPVAGNIGV--------------PVLQAKA-- 148

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S  G     +E SS  LD  +    K+      N+  DH+D H+  + Y  AK ++F+
Sbjct: 149 --SKGGYV---LELSSFQLDLVKTFAAKI--AVLLNITPDHLDRHENMEGYITAKSKIFD 201

Query: 236 ELLPKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             + K+S  II  D+ Y  E+   +++ H+      SV        L+K  +I N     
Sbjct: 202 R-MDKDSYGIINIDNDYCHEIFTNLQQKHHIKLIPFSVTKI-----LEKGISIVNDIITD 255

Query: 293 ISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              E   F  +    L G     N   +  +   IG++   ++E +     +P R +++G
Sbjct: 256 NFFEHISFKLISNKSLQGIHNSENIAASYAVARIIGLEPVKIIESISSFQGLPHRMQYLG 315

Query: 351 T 351
            
Sbjct: 316 N 316


>gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa]
          Length = 458

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L  L       LI + ++F         + VS+DSR I  G +F+A+ G + DGH ++
Sbjct: 5   LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+
Sbjct: 56  AEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107

Query: 121 TGTSGKSSVASFVQQICQ 138
           TG+SGK++V   +  I +
Sbjct: 108 TGSSGKTAVKEMLASILR 125


>gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
 gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
          Length = 178

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  +  +  DSR I  G +FV + G + DGH FI  A+A G +A     A+  QD  
Sbjct: 37  QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                  P+L V +    +   A+    K   N++AVTG++GK++    +
Sbjct: 90  VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKDLI 139


>gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
 gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
          Length = 465

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR  QAG ++VA  G   DGH F+  A  +GA A++V              + T I
Sbjct: 27  VVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEVD--------EAVTQI 78

Query: 93  LVVDNTRKFLSL---FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           +V D+T    SL      +L      +++A+TG+ GK++    + QI    G
Sbjct: 79  VVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSEDG 130


>gi|332142426|ref|YP_004428164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552448|gb|AEA99166.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 479

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 130/340 (38%), Gaps = 43/340 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V+S   +L      +     + V+ +   F  L  S       + ++ +TG++GK
Sbjct: 72  GVDTLVLSPGLALDIEQVELAKQCGVEVIGDVELFARLNTSFKSDTPAKRVVGITGSNGK 131

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V   V  +    G+ S + G                  P+     L  L S     V 
Sbjct: 132 TTVTLLVNHLLNACGVKSIEAG--------------NVGRPV-----LEALESDADV-VV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF---EELLPKESP 243
           +E SS  L+      + L A +  N+  DH+D H T + Y +AK R+F   +  +     
Sbjct: 172 MELSSFQLET--TSSLVLEAATVLNISDDHLDRHGTLEHYVDAKHRIFANAKSAVVWRDG 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCR-----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  DDA + E    A  A         +  G          V  + +K    I+  GK
Sbjct: 230 EFVAPDDALNVEGQANAQKANQNGLLRSAIEYGLGASDSGFSIVTMLDSKH---IAFNGK 286

Query: 299 DFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRG 355
               L    L G   V N + A G+C  +G+     ++HL      P R  E    NS  
Sbjct: 287 PIIALSDIHLAGMHNVLNIMAALGICCKLGVSPDQAVKHLHSFKSAPHRCVEVARVNSVR 346

Query: 356 GRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFGCGGD 393
              Y+D +  +N    I  L+ I    +G+++++   GGD
Sbjct: 347 ---YIDDSKATNIGATIAALEGISPTIAGKLLLI--AGGD 381


>gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 453

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 49/247 (19%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N +AVTGT+GKS+  + +  I   +GL     G                           
Sbjct: 105 NFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNI------------------------- 139

Query: 176 YLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFN 228
                GV+ +  +AS  G    L   +LD +K          N+  DH+D HQ    Y  
Sbjct: 140 -----GVSALRAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMTGYIA 194

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK ++F+  + K+S A+I  D+ Y +++         R+  + +    I    +  + +K
Sbjct: 195 AKSKIFDR-MDKKSYAVINIDNDYCRKIFMLLQQEQ-RIKLIPFSVTKILENGILVVDDK 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQ-VYN-ALVAAGLCIA--IGIDSALVLEHLEKLHVVPG 344
                 ++  D  +        Q ++N   +AA   +A  IG++   ++E +     +P 
Sbjct: 253 ------IKDNDISYKLSFNKNLQGLHNYENIAASYAVAKIIGVEPKKIIESISSFQSLPH 306

Query: 345 RFEFVGT 351
           R +++G+
Sbjct: 307 RMQYIGS 313


>gi|157826844|ref|YP_001495908.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
 gi|157802148|gb|ABV78871.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
          Length = 450

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 34/241 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N+LAVTGT+GKS+  + +  I   +GL     G                  P+  AKA  
Sbjct: 105 NLLAVTGTNGKSTTTALISHILSDNGLDYPIAGNIGV--------------PVLQAKA-- 148

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S  G     +E SS  LD  +    K+      N+  DH+D H+  + Y  AK ++F+
Sbjct: 149 --SKGGYV---LELSSFQLDLVKTFAAKI--AVLLNITPDHLDRHENMEGYITAKSKIFD 201

Query: 236 ELLPKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             + K+S  II  D+ Y  E+   +++ H+      SV        L+K  +I N     
Sbjct: 202 R-MDKDSYGIINIDNDYCHEIFTNLQQKHHIKLIPFSVTKI-----LEKGISIVNDIITD 255

Query: 293 ISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              E   F  +    L G     N   +  +   IG++   ++E +     +P R +++G
Sbjct: 256 NFFEHISFKLISNKSLQGIHNSENIAASYAVARIIGLEPVKIIESISSFQGLPHRMQYLG 315

Query: 351 T 351
            
Sbjct: 316 N 316


>gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+AG +FVA+ G   D   F+ +A+A+GA  +V      L+           +
Sbjct: 59  ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLV------LEQPPVEPVPVPVV 112

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           LV D       L   R        +LA+TG+SGK++V      I QR
Sbjct: 113 LVPDTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQR 159


>gi|149007558|ref|ZP_01831193.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
 gi|147760917|gb|EDK67887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
          Length = 122

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIH 434
           + T  +G+I +V G  G++ + +R   G +     +I + +T D+P  EDP  I  EI  
Sbjct: 2   VETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYEDPMAIADEISS 61

Query: 435 GIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            I   +EK  +R EAI+ A+ + N + D +++AGKG +   I+   ++    D  +    
Sbjct: 62  YINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQGKKESYPGDTAVAENY 121

Query: 493 L 493
           L
Sbjct: 122 L 122


>gi|126729247|ref|ZP_01745061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
 gi|126710237|gb|EBA09289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
          Length = 477

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 154/395 (38%), Gaps = 75/395 (18%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           + ++  +
Sbjct: 25  VSIDTRSIAPGDLFVALKAAR-DGHDFVAQALEKGAAAALVSR------IPEGVDNSEKL 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145
           L+VD+ +  L         +    ++AVTG+ GK+S    ++ +    G       S+  
Sbjct: 78  LLVDDVQTGLEALGEAARARFGGRVVAVTGSVGKTSTKEMLRTVLSEQGTVHAAEKSYNN 137

Query: 146 QIGPTSTISSFAQDNRLTT-------PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G   T++   +D            P  I     L+ ++   V  V++ A +H      
Sbjct: 138 HWGVPLTLARMPKDADFAVIEIGMNHPGEI---APLARMARPHVAMVTIVAPAH------ 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                    +F NL           +     K  +FE L P +  AI   D A S  +  
Sbjct: 189 -------LAAFENL-----------EGIAREKASIFEGLEP-DGIAIYNGDLAVSGILRD 229

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVYN 314
           +A     + +S G      H  ++ ++      T++  G+ +     F   +PG     N
Sbjct: 230 KAAETARKSISFGETAGTHH--RLTSVQVMDACTVAT-GRAWRVPLLFKVMVPGRHFAMN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMI 372
           A+    +  A+ +D AL +  L + +  PG         RG R  I +D      +LE+I
Sbjct: 287 AMGVMAVISALRLDRALAVNALAQWN--PG-------AGRGLREQIRLDPVDDRLTLELI 337

Query: 373 --LKNIRTITSGRIIVVFGCGGD------RDQGKR 399
               N    + G  + V    G       RD+G+R
Sbjct: 338 DDAYNSNPASLGAALEVLAAAGTHDHVGRRDKGRR 372


>gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+AG +FVA+ G   D   F+ +A+A+GA  +V      L+           +
Sbjct: 59  ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLV------LEQPPVEPVPVPVV 112

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           LV D       L   R        +LA+TG+SGK++V      I QR
Sbjct: 113 LVPDTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQR 159


>gi|153947798|ref|YP_001402346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959293|gb|ABS46754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis IP 31758]
          Length = 438

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 100/241 (41%), Gaps = 48/241 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           ++A+TG++GKS+V + V ++ + +G S      IG    ++   QDN+LT          
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIG-VPALTLLKQDNQLTV--------- 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMR 232
           L   S Q  T  S+ AS               A +  N+  DH D Y    Q Y  AK+R
Sbjct: 157 LELSSFQLETTHSLRAS---------------AATILNVTEDHTDRYPLGLQQYRAAKLR 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           ++E         ++ ADDA +  V      A  R +S G      HL       NKQQ  
Sbjct: 202 VYE----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGE 246

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           I +  +    L      L G     NAL A  L  A+GI  A  L+ L     +P RF+ 
Sbjct: 247 IWLRVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQL 306

Query: 349 V 349
           V
Sbjct: 307 V 307


>gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
 gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
          Length = 458

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L  L       LI + ++F         + VS+DSR I  G +F+A+ G + DGH ++
Sbjct: 5   LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+
Sbjct: 56  AEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107

Query: 121 TGTSGKSSVASFVQQICQ 138
           TG+SGK++V   +  I +
Sbjct: 108 TGSSGKTTVKEMLASILR 125


>gi|108804329|ref|YP_644266.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
 gi|123069100|sp|Q1AVX4|MURC_RUBXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108765572|gb|ABG04454.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 447

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 77/193 (39%), Gaps = 26/193 (13%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A   TN+  DH D++ + +       R F   LP E   ++ ADD   + +   A  A C
Sbjct: 170 AAVITNIEYDHPDFYASLEEVVETFAR-FVAGLPPEGHLVLCADDPRCRRL---AELAPC 225

Query: 266 RVLSVGYQGKFIHLKKVC--------AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            V + G  G  +  + +             + +V++ V G+             V N+L 
Sbjct: 226 PVTTYGLSGGELRARVLSPGSYLLFEGARKRGEVSLGVYGR-----------HNVLNSLA 274

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           AAG+   +G D       L     V  RF+  G  S G R+  DYAH    +  IL   R
Sbjct: 275 AAGIARWLGHDPLEAARTLGSFGGVRRRFQLKGERS-GVRVVDDYAHHPTEIMAILDVAR 333

Query: 378 TITS--GRIIVVF 388
              +  GRII VF
Sbjct: 334 ATAAPEGRIIAVF 346


>gi|332528462|ref|ZP_08404454.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
 gi|332042141|gb|EGI78475.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
          Length = 477

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 46/287 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++  S V  +   +GL  +F IG    ++S   + RL              
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANARL-------------- 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKM 231
              QG   + VEA     D   L+ + +++   TN+  DH+     D+ + +QA+ +   
Sbjct: 152 --GQG-EFIVVEADES--DASFLNLLPVLS-VVTNIDADHMETYGHDFGRLKQAFVD--- 202

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IH 286
             F   +P    AI+  DD   +EV   A    C + S G+    Q + ++++ V   +H
Sbjct: 203 --FLHRMPFYGTAILCTDDPAVREV---ADTVNCPITSYGFGDNAQVRAVNVRAVGGQMH 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              Q    V   D + +  L G   V NAL A  +   + I    +L+ L +   V  RF
Sbjct: 258 FTAQRRNGVVLPDLEVVLNLAGRHNVLNALSAIAVAAELEIPDVALLKALAEFKGVGRRF 317

Query: 347 EFVG-TNSRGGRIYV---DYAHTSNSLEMILKNIRTITSG-RIIVVF 388
           +  G   ++GG  +    DY H    +   L   R    G R+++ F
Sbjct: 318 QRYGEIPAKGGGTFTLIDDYGHHPVEMAATLSAARGAFPGQRLVLAF 364


>gi|91786974|ref|YP_547926.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
 gi|122968125|sp|Q12EL4|MURC_POLSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91696199|gb|ABE43028.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
          Length = 467

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 35/257 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++  S V  +   +GL  +F IG    ++S   + RL              
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANARLGLGD---------- 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  ++ VEA     D   L+ + ++A   TN+  DH++ +    A        F  
Sbjct: 156 -------YIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFANLKKAFVDFLH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IHNKQQV 291
            +P    AI+  DD   +E++ +     C + S G+    Q + ++++ V A +H   Q 
Sbjct: 206 RMPFYGTAILCTDDPAVREIVPQVS---CPITSYGFGEDAQVRAVNVRPVGAQMHFTAQR 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
              V   D + +  L GE  V NAL A  + + + +    V + L +   V  RF+  G 
Sbjct: 263 RNGVTLPDLEVVLNLAGEHNVLNALSAIAVAVELNVPDTAVQKALAEFKGVGRRFQSYGD 322

Query: 351 TNSRGG---RIYVDYAH 364
             ++GG    +  DY H
Sbjct: 323 VPAKGGGHFTVIEDYGH 339


>gi|311115069|ref|YP_003986290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310946563|gb|ADP39267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 597

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 120/546 (21%), Positives = 204/546 (37%), Gaps = 100/546 (18%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++  N ++ DSR I+   +   I GN +  +L    A   G    V   +Y+  D++   
Sbjct: 74  KKTYNHITYDSRDIKKNTLLF-IKGNFKPEYL--KDADKNGLTTYVAEQSYA--DYT--- 125

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRSGLS 143
             N   L+V + RK +SL +S  +G +P+  L V G +G       A F   I     L+
Sbjct: 126 --NAVGLIVTDVRKAMSLLSSEFFG-NPQERLRVIGITGTKGKTTTAYFTHAI-----LN 177

Query: 144 SFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  +  SS           ++ LTTP  +   + +S     G+ ++ +E SS    
Sbjct: 178 EHSEGKAALFSSVDNCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEVSSQAYK 237

Query: 196 QHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             R+ G+     +F N+  DHI    H T + Y   K     +++      I+ AD A++
Sbjct: 238 VERVYGLHFNVAAFLNISPDHISPIEHPTFEDYLYCK----RQIVKNTDALILNADCAHA 293

Query: 254 KEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIH---------------------- 286
             +++ A N    V +         G+ I   + C+ H                      
Sbjct: 294 DLILQDAQNEYVDVTTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKYVA 353

Query: 287 ---------------------NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                                NK+Q   +    D  F   + G+F   NA  A  +  A+
Sbjct: 354 MPVSSDAQEHYVAILDNESKKNKKQFVPNYTTID-KFNLKIAGDFNYENATAAIAIANAL 412

Query: 326 GIDSAL---VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           GI+       L  +E +  + GR E            VDYAH   S + ++  +      
Sbjct: 413 GINENTDQKALHAIENVQ-ISGRMEVFKDTKSNTVAIVDYAHNYISTKSVVDFVYDKYGN 471

Query: 383 ---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
              RI +V G  GD+   +R  + + A D  +  + T ++   ED   I   +   +   
Sbjct: 472 NDLRITLVTGSTGDKAVDRRKEIVQAAQDRINQFVFTQEDTNVEDEMDICKYMQSCVTNP 531

Query: 439 FIEKG---NRIEAIRTAIEML-------NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            +E     NR EAI  ++E         N+ ++++  GKG E    V N       D  I
Sbjct: 532 NVESRIIINRAEAIEYSVEEARKDARENNRLNIILAIGKGDERWIKVHNKHVPYEGDSFI 591

Query: 489 IREILG 494
           I+ +  
Sbjct: 592 IKRLFS 597


>gi|226940889|ref|YP_002795963.1| cyanophycin synthetase [Laribacter hongkongensis HLHK9]
 gi|226715816|gb|ACO74954.1| ATP-grasp enzyme-like D-alanine-D-alanine ligase [Laribacter
           hongkongensis HLHK9]
          Length = 856

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 129/314 (41%), Gaps = 34/314 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA    G+ P  ++AV+GT+GK++       +  ++G    ++G T T   +    ++
Sbjct: 461 NMFAGDDNGRIP--VVAVSGTNGKTTTVRLSAHLIAQTGK---RMGMTVTDGVYVNGRQI 515

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQ 221
            +        A + L    V     E +  G+ +  L   +      TN+G  DH+  + 
Sbjct: 516 DSGDCSGPRSARNVLMHPDVDAAVFETARGGMLREGLGFDRCDVAVVTNVGEGDHLGLNY 575

Query: 222 TQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---- 276
               Y   ++ + + ++ +  SP+ +   +A    V + A +    V    + G      
Sbjct: 576 I---YTLDELAVLKSIVVQNVSPSGMAVLNAADPMVARMAASCPGSVTFFAHDGHHPVIN 632

Query: 277 ---IHLKKVCAIHNKQQVTISVEGKDFDFLF-----PLPG----EFQVYNALVAAGLCIA 324
                 ++V  + + Q   +  EG D    F     PL       FQ+ N++ A G   A
Sbjct: 633 AHRAQGRRVIYVEDGQ--IVCAEGGDVRMTFDLAQVPLTAGGRIAFQIENSMGAVGAAWA 690

Query: 325 IGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +GI     +A +   +      PGRF     + RG  +  DY H  ++++ +++ + T+ 
Sbjct: 691 LGIAQEQIAAGLASFVSDAATAPGRFNLF--DYRGATLIADYGHNPDAMQALVQAVETLP 748

Query: 381 SGRIIVVFGCGGDR 394
             R IVV    GDR
Sbjct: 749 GQRRIVVISGAGDR 762


>gi|258620877|ref|ZP_05715911.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
 gi|258625122|ref|ZP_05720039.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258582573|gb|EEW07405.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258586265|gb|EEW10980.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
          Length = 486

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 113/287 (39%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F NL +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHNLPFYGQAILC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   +A+DA  +    R           G QGKF  ++K  A 
Sbjct: 234 IDDPVIRELIPRVSRQVITYGFAEDADVRIENYRQQ---------GQQGKFTVVRKGKA- 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        + D    +PG     NA  A  +     I    +L  +        R
Sbjct: 284 -------------NLDITLNIPGRHNALNASAAIAVATEDDISDEAILRAMANTQGTGRR 330

Query: 346 FEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G  + +   DY H    +++ +K  R      R++++F
Sbjct: 331 FDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 377


>gi|170025735|ref|YP_001722240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis YPIII]
 gi|169752269|gb|ACA69787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis YPIII]
          Length = 438

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 100/241 (41%), Gaps = 48/241 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           ++A+TG++GKS+V + V ++ + +G S      IG    ++   QDN+LT          
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIG-VPALTLLKQDNQLTV--------- 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMR 232
           L   S Q  T  S+ AS               A +  N+  DH D Y    Q Y  AK+R
Sbjct: 157 LELSSFQLETTHSLRAS---------------AATILNVTEDHTDRYPLGLQQYRAAKLR 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           ++E         ++ ADDA +  V      A  R +S G      HL       NKQQ  
Sbjct: 202 VYE----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGE 246

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           I +  +    L      L G     NAL A  L  A+GI  A  L+ L     +P RF+ 
Sbjct: 247 IWLRVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQL 306

Query: 349 V 349
           V
Sbjct: 307 V 307


>gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis MSMB43]
          Length = 269

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 27/245 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+     +GA A +VS + +          N P 
Sbjct: 29  VSTDSRSAGPGDLFVALKGERFDAHDFVGDVADRGASAAIVSRSPA--------EWNLPA 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  LKVADTRAALGALAHGWRMRFSMPMVAVTGSNGKTTVKEMIASIFAAA------VGEPAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNFNNDVGLPLTLLRLTAAHRLAVIELGMNH---PGETDTLAKIAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R++ 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244

Query: 270 VGYQG 274
               G
Sbjct: 245 FALHG 249


>gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 455

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  V+ DSR I  G +F+ I G + DGH F+  AI  GA A +  +           
Sbjct: 21  ETVITSVAFDSRKISQGALFIPIKGER-DGHDFVGSAIEAGASATLWEAG---------- 69

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             N P    +L V +T K +   A     K    ++++TG++GK++    V  +  +   
Sbjct: 70  NPNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMVAAVLAK--- 126

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200
             F +  T   ++F  +N +  P  I   K ++ +    V  + ++ +   H L Q    
Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLARP 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + +I    T +G  HI++  ++    +AKM + + L  +E    IY  D     + +RA
Sbjct: 179 DVAVI----TMIGEAHIEFFGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230

Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   + G+     IH   +   +H+       + G D +F  P+ G   V NA+ A
Sbjct: 231 AKLPQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287


>gi|332670125|ref|YP_004453133.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas fimi
           ATCC 484]
 gi|332339163|gb|AEE45746.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas fimi
           ATCC 484]
          Length = 476

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 21/122 (17%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   LAVTGT+GK++    ++ + + +G  +  +G   T              P+ LA  
Sbjct: 104 PAPWLAVTGTNGKTTTVGMLESVLRAAGRDAVAVGNVGT--------------PVVLAA- 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +      ++VE SS  L  H    +   A +  N+  DH+D+H + +AY  AK R+
Sbjct: 149 ----TDPARDVLAVELSSFQL--HHTSSMSAQAAAVLNVAPDHLDWHGSMEAYAAAKGRV 202

Query: 234 FE 235
           FE
Sbjct: 203 FE 204


>gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+AG +FVA+ G   D   F+ +A+A+GA  +V      L+           +
Sbjct: 59  ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLV------LEQPPVEPVPVPVV 112

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           LV D       L   R        +LA+TG+SGK++V      I QR
Sbjct: 113 LVPDTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQR 159


>gi|42046|emb|CAA35611.1| unnamed protein product [Escherichia coli K-12]
          Length = 438

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +  +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVTATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL    L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALARVALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
 gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
          Length = 477

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 4/129 (3%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DLLAAMNGRPVGNLPEGIIGISIDSRTIAKGEAFFAIRGDRVDGHDYAGIALANGASLLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS         A  R   P++VVD+  + +         +    ++AVTG+ GK++    
Sbjct: 69  VSEG----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSG 141
           ++ +    G
Sbjct: 125 LRHVLSPLG 133


>gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
          Length = 465

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 13/113 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR  QAG ++VA  G   DGH F+  A  +GA A++V            +    P 
Sbjct: 27  VVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEH---------EVDEAVPQ 77

Query: 93  LVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           +VV+++ + L   A     +L      +++A+TG+ GK++    + QI    G
Sbjct: 78  IVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSEDG 130


>gi|254303964|ref|ZP_04971322.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148324156|gb|EDK89406.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 468

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL 268
           TN+  DH+D H       N K    E +   +  AII  D    KE + R          
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIEFICHTQKEAIICMDCENLKEAVTRLPEGKSVTTY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG 326
           S+  +   I  K +  I +++ +      K+   +F   +PGE  + N+L    L +  G
Sbjct: 238 SIKDENASIFAKNI-RIEDRKTIFDFYVNKELIGEFSLNIPGEHNISNSLPVIYLALKFG 296

Query: 327 IDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +    + E L K      R++ +         G  ++  RI  DYAH    ++  LK I+
Sbjct: 297 VSKEEIQEALSKFKGSKRRYDVLFDKELENGYGNKTKRVRIVDDYAHHPTEIKATLKAIK 356

Query: 378 TITSGRIIVVF 388
           +I + R++ +F
Sbjct: 357 SIDTSRLVAIF 367


>gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
          Length = 828

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 44/365 (12%)

Query: 28  RKINEVS-------SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           R+I E+S       +DSR +      +F A+   + DG  +I    A+G    VVS    
Sbjct: 15  RRIGELSATIDWLLTDSRSLSFPEETLFFALATKRNDGARYIRDLYARGVRNFVVSEE-G 73

Query: 79  LQDFSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           L++  A + S  P   +LVV +  K L   A +   +    ++ +TG++GK+ V  ++ Q
Sbjct: 74  LKEAEA-LGSPLPDLNLLVVPSPLKALQKLAEQHRDRFQIPVIGITGSNGKTVVKEWLHQ 132

Query: 136 ICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +          + P   I  S  + ++++  P  ++     + L+      +    S  G
Sbjct: 133 L----------LSPERVITRSPRSYNSQIGVPLSVWQMNEQTELAI-----LEAGISEPG 177

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDA 251
             +   + IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +IY  DD 
Sbjct: 178 EMRALQNIIKPTIGILTNIGGAH------QENFFSLQEKCMEKLALFKDCDVVIYNGDDE 231

Query: 252 Y-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           + S  V K   +A     S     + +++ KV    N   ++      D  F  P   + 
Sbjct: 232 FISNCVSKSIFSAREIAWSRRDMERPLYINKVEKQENSTVISYRYLDMDNTFTLPFIDDA 291

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--S 368
            + N+L     C+ + + +  + E + KL  V  R E      + G + ++ ++ S+  S
Sbjct: 292 SIENSLNCLAACLYLMLPAGQITERMAKLEPVAMRLEV--KEGKNGCLLINDSYNSDLGS 349

Query: 369 LEMIL 373
           L++ L
Sbjct: 350 LDIAL 354


>gi|328881789|emb|CCA55028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           venezuelae ATCC 10712]
          Length = 474

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 26/166 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LAVTGT+GK++    +  I + +GL +  +G                
Sbjct: 104 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIG------------- 150

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + L  A+  L  +    ++VE SS+ L  H    +++ + +  NL  DH+D+H + +
Sbjct: 151 ---VSLLDAV--LGEETYDVLAVELSSYQL--HWAPSVRVHSAAVLNLAPDHLDWHGSME 203

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL 268
           AY   K R+++        A +Y   D  ++++++ A    GCR +
Sbjct: 204 AYAADKGRIYQ----GNQVACVYNVADKVTEDLVREADVEEGCRAI 245


>gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 431

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 41/253 (16%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FAS  Y    ++I+A+TGT+GK+++ + V +I  + G  S+ +G    I     D  +  
Sbjct: 83  FASYFY--KTKDIVAITGTNGKTTITTLVNEILNKVG-KSYAVG---NIGVGVMD--VID 134

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
             P ++                 EASS  L    +D         TN+  DH+D+H+T +
Sbjct: 135 YDPKFIV---------------CEASSFQL--AYIDKFHPHVAVITNITSDHLDWHKTVE 177

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL------SVGYQGKFIH 278
            Y  AK  +++  L ++   I+ A   Y K +     NAG +         +G  G F  
Sbjct: 178 NYRKAKENIYKN-LEEDDFLILGASCDYVKTI-----NAGVKNTFYYSYDDLGRPGLFTK 231

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +++   H    +   ++  D   +F + G   + NA+ A     ++G+D  ++++ ++ 
Sbjct: 232 DEEIIFRHFDGTLENIMKVSD---VF-IKGRHNIENAMAAILSAYSLGVDLEIIVDTIKN 287

Query: 339 LHVVPGRFEFVGT 351
              V  R EFV T
Sbjct: 288 FKGVEHRIEFVRT 300


>gi|189029216|sp|Q24ZG1|MURC_DESHY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 449

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 44/332 (13%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  + A+ +V S+AY  ++     R+    + V +  +FL    S+  G      +AV G
Sbjct: 58  ANVEKADIVVASAAYG-ENHEEIARARELNIPVYSYPQFLGRLMSKKRG------IAVAG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSS 179
           T GK++  + +     +SG     I PT  + S       N  +     +LA++  Y   
Sbjct: 111 THGKTTTTAMIGLALLQSG-----IDPTIVVGSDVPSIGGNAYSGQGDFFLAESCEY--- 162

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                       H L+        LI    TN+  DH DY +       A   + +++ P
Sbjct: 163 ----------RRHFLN---YSPEYLI---ITNIEFDHPDYFKDLDDVVCAFSEIAQKI-P 205

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGK 298
                 I+ +D       ++A  A   +++ G   +          H++   +TI   G 
Sbjct: 206 PHGRIFIWHEDP-----QRKAIQAQSPIITFGLNEEADVYATNIQFHDEGSTMTIVAHGT 260

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +F   + G+  + NAL +  LC+ IG+ +  VLE L   +    RFE +G N+ G  
Sbjct: 261 VLGEFHLHVSGKHNILNALASIALCLEIGVPTEKVLESLSHFNGTKRRFEHIGQNA-GAL 319

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
           I  DYAH    +   L+  R +    RI  VF
Sbjct: 320 IVDDYAHHPTEIRSTLEGARLSFPDRRIRAVF 351


>gi|328885916|emb|CCA59155.1| UDP-N-acetylmuramate--alanine ligase [Streptomyces venezuelae ATCC
           10712]
          Length = 463

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 13/223 (5%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSKEVMKR-AHNAGCRVLSVG-YQGK 275
           H    A  +     FE    K  P   ++  + A ++E+ +R A   G  +++VG  +  
Sbjct: 190 HHANYASMDEIYESFEAFTAKIRPGGTLVVGEHAGARELARRVADREGLDIVTVGESEDS 249

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              + K+     K +VT++++G +  F   +PG    +NA  A      +GID A + + 
Sbjct: 250 DARILKIVPNGMKSEVTVALDGVEHTFTVSVPGRHYAHNAAAALAAGARVGIDPAELAQA 309

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGC---G 391
           L     V  R +  G  ++G ++   YAH    +   L+ +R    + R++VVF      
Sbjct: 310 LTAYTGVGRRLQLKG-EAKGVQVIDSYAHHPTEMTADLEAMRGAAGASRLLVVFQPHLFS 368

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433
             ++ GK   MG  AL LAD ++V D  P  EDP   I +E+I
Sbjct: 369 RTQELGKE--MGD-ALALADASVVLDIYPAREDPIPGITSELI 408


>gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 455

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 126/328 (38%), Gaps = 43/328 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G +FV + G + DGH F+  AI+ GA A +    +  +        N
Sbjct: 24  ITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ VD+    +   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   ++F  +N +  P  I     L    +  +  + +     G   H  +         
Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA----G 264
           T +G  HI++  T+    +AKM + + L  +E    IY  D+   +E  K+   A    G
Sbjct: 184 TMIGEAHIEFFGTRDKIADAKMEITDFL--REDGEFIYNGDEPLLQERAKKLDQAKATFG 241

Query: 265 CR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            R    V + G++    H             T ++   +  F  P+ G+  V NA+ A  
Sbjct: 242 FRDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAIS 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +    G     +   L        R E+
Sbjct: 290 VGRHFGESDEEIASSLSNFKPTANRMEW 317


>gi|225017206|ref|ZP_03706398.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
 gi|224949981|gb|EEG31190.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
          Length = 457

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 139/340 (40%), Gaps = 45/340 (13%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
           L IP  +   AE I       L  ++A I  + P L+        ++    L G   E  
Sbjct: 56  LGIPVTLGHRAENI---KGADLIVYTAAIMEDNPELIAAKQSGIPTIERCVLLGLITERY 112

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAK 172
            + + V+GT GK++  S + QI   +G     +  G   +I  + +    +  S + + +
Sbjct: 113 SDCICVSGTHGKTTTTSMLTQILLDAGKDPSAVIGGKLKSIEGYGR----SGSSEVMVCE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  ++ +    H+S + +                    N+ RDH+DY +T +   N K+ 
Sbjct: 169 ACEFVDT--FLHLSPDIAV-----------------VLNIDRDHMDYFKTME---NLKLS 206

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGY--QGKFI--HLKKVCAIHN 287
            FE+   K +  I+Y  DDA S EV  R      R ++ G+  Q  +   +++ V  +H 
Sbjct: 207 -FEKFCRKATKCILYNGDDANSAEVAGRVDQ---RKVTFGFSDQNDYYPANVQHVDGLHT 262

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +    E      LF +PG+  + NA  A    +  G+    + E L        RFE
Sbjct: 263 TFDLMHKGERLTSLNLF-VPGDHNILNATAACAAALETGVRPEQLAEGLGNFKGAGRRFE 321

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +G    G  I  DYAH    +++ L+  +++   ++  V
Sbjct: 322 LLG-KINGITIVDDYAHHPAEIKVTLQAAQSLNFNKVWAV 360


>gi|89893538|ref|YP_517025.1| hypothetical protein DSY0792 [Desulfitobacterium hafniense Y51]
 gi|219666866|ref|YP_002457301.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
 gi|89332986|dbj|BAE82581.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537126|gb|ACL18865.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
          Length = 435

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 44/332 (13%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  + A+ +V S+AY  ++     R+    + V +  +FL    S+  G      +AV G
Sbjct: 44  ANVEKADIVVASAAYG-ENHEEIARARELNIPVYSYPQFLGRLMSKKRG------IAVAG 96

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSS 179
           T GK++  + +     +SG     I PT  + S       N  +     +LA++  Y   
Sbjct: 97  THGKTTTTAMIGLALLQSG-----IDPTIVVGSDVPSIGGNAYSGQGDFFLAESCEY--- 148

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                       H L+        LI    TN+  DH DY +       A   + +++ P
Sbjct: 149 ----------RRHFLN---YSPEYLI---ITNIEFDHPDYFKDLDDVVCAFSEIAQKI-P 191

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGK 298
                 I+ +D       ++A  A   +++ G   +          H++   +TI   G 
Sbjct: 192 PHGRIFIWHEDP-----QRKAIQAQSPIITFGLNEEADVYATNIQFHDEGSTMTIVAHGT 246

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +F   + G+  + NAL +  LC+ IG+ +  VLE L   +    RFE +G N+ G  
Sbjct: 247 VLGEFHLHVSGKHNILNALASIALCLEIGVPTEKVLESLSHFNGTKRRFEHIGQNA-GAL 305

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
           I  DYAH    +   L+  R +    RI  VF
Sbjct: 306 IVDDYAHHPTEIRSTLEGARLSFPDRRIRAVF 337


>gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Photobacterium profundum SS9]
 gi|46914748|emb|CAG21525.1| hypothetical
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Photobacterium profundum SS9]
          Length = 468

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+D+R + A  +F+A+ G+  D H F   A+  G  A++VS    ++         
Sbjct: 24  VANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNAMDNGVAALLVSRHLPVE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSG 141
            P LVV +T + L L  + L       H    +A+TG+ GK++V   V +I  + G
Sbjct: 75  LPQLVVKDTHQALGLLGAWLKQTMEQDHGLKTMALTGSCGKTTVKEMVAEILSQKG 130


>gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 265

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 25/249 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIR 87
           IN V+ +S+ + A  IF AI G   DGH F+ + I + ++ IVV + + +   +    I+
Sbjct: 23  INNVTINSKEVTAKSIFFAIKGKNTDGHYFVKEVIKKRSKVIVVKNNFKVPKNNLHKFIK 82

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             +PI  ++N  K+  L +    GK     + +TG+ GK+++   +    ++ G +    
Sbjct: 83  VRSPIRSLENFAKYQRLTSQ---GK----FVGITGSFGKTTLKYMLSFFLEQYGKT---- 131

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
              S+  SF  +N    P    L+ + +  +SQ        +SS  +D  +L  I +   
Sbjct: 132 --FSSPKSF--NNHFGLP----LSLSNTPKNSQFNIFELGMSSSREID--KLSQILRPDI 181

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  H+   +  +A   AK  +    + +    ++  DD Y   + K A+N   +
Sbjct: 182 GVITNIGPAHLKNFKNLKAVCLAKAEIMNH-IQENGYIVLNKDDFYFNTLFKIANNKKLK 240

Query: 267 VLSVGYQGK 275
           +++     K
Sbjct: 241 IITFSKSKK 249


>gi|300712111|ref|YP_003737925.1| dihydropteroate synthase [Halalkalicoccus jeotgali B3]
 gi|299125794|gb|ADJ16133.1| dihydropteroate synthase [Halalkalicoccus jeotgali B3]
          Length = 807

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P E P +  A+     E +         VL+VG +G           H + +VT++  G 
Sbjct: 188 PAEGPLVTAAE----GEALSAVREQAGEVLTVGSKGDVRVAYGGRTNHVESRVTLAGPGW 243

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTNSRGGR 357
           D +   PL G +Q  NA +AA L   +   S   LE  L   H  PGRFE +G       
Sbjct: 244 DVEARIPLLGAYQARNAGIAAALARRVTSVSGTELERGLRNAH-WPGRFEVMGEEP---L 299

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             +D AH   + E + + +       + +V G   ++D   R +    AL   D  + T 
Sbjct: 300 TVLDGAHNPGACEALAETLAEFEYDDLFLVVGAMHEKDH--RGMAA--ALPAPDHVVCTQ 355

Query: 418 -DNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D  R+ED E + R     G+     +G    A+  A+     +D ++VAG
Sbjct: 356 PDLDRAEDREVLARVFAERGVEDVKTRGAVSGALSRALSEAGPEDCVLVAG 406


>gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 833

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 137/333 (41%), Gaps = 38/333 (11%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATI 86
           I+ + +DSR +      +F A+   + DG  +IP   ++G    VVS  AY   +     
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYSRGVRNFVVSKEAYKWVESGQLA 83

Query: 87  RSNTPIL-----VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            SN+ +L     VV N  K L   A +   +    ++ +TG++GK+ V  ++ Q+     
Sbjct: 84  MSNSDMLAVNFLVVANPLKALQKLAEQHREQFQIPVIGITGSNGKTIVKEWLHQL----- 138

Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQH 197
                + P   I  S  + ++++  P  ++     S L+    G++ +    +   +   
Sbjct: 139 -----LSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGISEMGEMRALQNI--- 190

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAY-SK 254
               IK   G  TN+G  H      Q+ +F+ + +  E+L L K    +IY  DD + S 
Sbjct: 191 ----IKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKNCDVVIYNGDDEFISN 240

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            V K   +A     S     + + + KV    +   ++      D  F+ P   +  + N
Sbjct: 241 CVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVISYRYLEMDNTFILPFIDDASIEN 300

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +L     C+ + + +  + E +  L  V  R E
Sbjct: 301 SLNCLAACLYLMLPAEKITERMATLEPVAMRLE 333


>gi|332704503|ref|ZP_08424591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554652|gb|EGJ51696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 435

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 29/174 (16%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+  A G + +VVS    ++     +  + P   V +  +  S F S       E ILAV
Sbjct: 68  PEQFA-GVDLVVVSPGVPVRKMGHLL-GDMPERKVVSELELASWFVS-------EPILAV 118

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++  S    I + SG   F  G             + TP   YL      L  +
Sbjct: 119 TGTNGKTTTVSLCGHILRESGKRVFVGG------------NIGTPLSEYL------LGGE 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               + +E SS  L   R    K   G   N   +H+DYH++ + Y  AK++LF
Sbjct: 161 RADILVLEVSSFQLQNCRT--FKPHVGVLLNFSANHLDYHESMEEYLEAKLKLF 212


>gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 460

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 13/119 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I+ VS+D+R+I +  +F+A+ G + D H F   A   GA+A++VS    +       
Sbjct: 21  DTSISAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSKRLPV------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRL----YGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             + P LVV +TR  L    + L      KH    LA+TG+ GK++V      I    G
Sbjct: 74  --DLPQLVVTDTRIALGQMGAWLKVEMTQKHGLKTLALTGSCGKTTVKEISAAILATKG 130


>gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 455

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  I  V+ DSR I  G +FV I G + DGH F+  AI  GA A +  +           
Sbjct: 21  ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAG---------- 69

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             N P    +L V +T K +   A     K    ++++TG++GK++    V  +  +   
Sbjct: 70  NPNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMVAAVLAK--- 126

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200
             F +  T   ++F  +N +  P  I   K ++ +    V  + ++ +   H L Q    
Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLVRP 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + +I    T +G  HI++  ++    +AKM + + L  +E    IY  D     + +RA
Sbjct: 179 DVAVI----TMIGEAHIEFFGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230

Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   + G+     IH   +   +H+       + G D +F  P+ G   V NA+ A
Sbjct: 231 AKLPQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287


>gi|262377183|ref|ZP_06070408.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
 gi|262307921|gb|EEY89059.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
          Length = 482

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 134/331 (40%), Gaps = 42/331 (12%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA  IVVS+A   +  +    I +  P++      +   +    +  +H    +AV GT
Sbjct: 80  KGANVIVVSTAIDKENPEIKTAIENRIPVV------RRAEMLGELMRYRHG---IAVAGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +   C    L+   + PT  I      NR    + +    A  Y+ ++   
Sbjct: 131 HGKTTTTSLIT--CM---LAEENMDPTYVIGGLL--NRTGMNAAL---GASRYIVAE--- 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             + E+ +  L       ++ +A   TN+  DH+D +             F + LP    
Sbjct: 178 --ADESDASFLH------LEPMAAVVTNIDADHMDTYGGSFDVLKDTFIQFLQKLPFYGL 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DDA  +E+M R       +L+ G+  +   ++ V    +  Q   +V  K+ + L
Sbjct: 230 AVVCGDDANIREIMPRIARP---LLTYGFN-EDNDIRAVDVDQDGMQTHFTVLRKEREPL 285

Query: 304 ---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIY 359
                 PG   V NAL A G+    G+  A +   LE    V  RFE  G  +  GG + 
Sbjct: 286 RVTVNQPGLHNVLNALAAIGIATDEGVSDASICRALEGFSGVGRRFEVQGEFAIEGGDVK 345

Query: 360 V--DYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  DY H    +E  +K  R     R +V+ 
Sbjct: 346 LVDDYGHHPKEVEATIKAARQSHPDRRLVMM 376


>gi|22127502|ref|NP_670925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis KIM 10]
 gi|45443363|ref|NP_994902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108809539|ref|YP_653455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Antiqua]
 gi|108810584|ref|YP_646351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Nepal516]
 gi|145600344|ref|YP_001164420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Pestoides F]
 gi|150260412|ref|ZP_01917140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162420170|ref|YP_001607297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Angola]
 gi|165928206|ref|ZP_02224038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937844|ref|ZP_02226405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009082|ref|ZP_02229980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212214|ref|ZP_02238249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401289|ref|ZP_02306789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421918|ref|ZP_02313671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426438|ref|ZP_02318191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469522|ref|ZP_02334226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           FV-1]
 gi|218927749|ref|YP_002345624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis CO92]
 gi|229837056|ref|ZP_04457221.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|229840441|ref|ZP_04460600.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843017|ref|ZP_04463167.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900776|ref|ZP_04515900.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|270487854|ref|ZP_06204928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294502641|ref|YP_003566703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|30316092|sp|Q8ZIF1|MURD_YERPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595705|sp|Q1C212|MURD_YERPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595706|sp|Q1CMM9|MURD_YERPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21960600|gb|AAM87176.1|AE013965_3 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pestis KIM
           10]
 gi|45438232|gb|AAS63779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774232|gb|ABG16751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|108781452|gb|ABG15510.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Antiqua]
 gi|115346360|emb|CAL19232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CO92]
 gi|145212040|gb|ABP41447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Pestoides F]
 gi|149289820|gb|EDM39897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162352985|gb|ABX86933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Angola]
 gi|165914256|gb|EDR32872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919817|gb|EDR37118.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992421|gb|EDR44722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206960|gb|EDR51440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960055|gb|EDR56076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049314|gb|EDR60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054536|gb|EDR64344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229682115|gb|EEO78207.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|229689893|gb|EEO81952.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696807|gb|EEO86854.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705999|gb|EEO92008.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|262360671|gb|ACY57392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D106004]
 gi|262364618|gb|ACY61175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D182038]
 gi|270336358|gb|EFA47135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294353100|gb|ADE63441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|320016919|gb|ADW00491.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 438

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 100/241 (41%), Gaps = 48/241 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           ++A+TG++GKS+V + V ++ + +G S      IG    ++   QDN+LT          
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGGGGNIG-VPALTLLKQDNQLTV--------- 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMR 232
           L   S Q  T  S+ AS               A +  N+  DH D Y    Q Y  AK+R
Sbjct: 157 LELSSFQLETTHSLRAS---------------AATILNVTEDHTDRYPLGLQQYRAAKLR 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           ++E         ++ ADDA +  V      A  R +S G      HL       NKQQ  
Sbjct: 202 VYE----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGE 246

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           I +  +    L      L G     NAL A  L  A+GI  A  L+ L     +P RF+ 
Sbjct: 247 IWLRVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQL 306

Query: 349 V 349
           V
Sbjct: 307 V 307


>gi|328542964|ref|YP_004303073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412710|gb|ADZ69773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 466

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 25/151 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+  + +  + +  GL   Q+G             + TP        L  
Sbjct: 116 LIAITGTNGKSTTTALIAHLLKTLGLD-VQMG-----------GNIGTP-------VLDL 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              Q   H  VE SS+ +D      I+   G   NL  DH+D H T + Y   K    E 
Sbjct: 157 APLQPGRHYVVECSSYQIDLA--PSIEPTVGILMNLSPDHLDRHGTMENYAAIK----ER 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           L+     A++  DD +S+ +  R   AG RV
Sbjct: 211 LVAGSRTAVVGVDDRFSEAIADRIARAGVRV 241


>gi|229826930|ref|ZP_04452999.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
 gi|229788548|gb|EEP24662.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
          Length = 276

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 26/195 (13%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H+++ +++     AK  +F+ L P     I+  DD    +++   +  G + + 
Sbjct: 3   TNIGLCHLEFLKSRDGILKAKTEIFDFLKPT-GHIILNVDD---DKLVTVENVKGIQPMF 58

Query: 270 VGYQGKFIHLKKVCAIHNKQQ------VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            G + K      V A   K +        I  E  +F  L P+PG   VYNAL       
Sbjct: 59  FGIENK----NGVWADEIKPEGLKGISCCIHTEKGNFPVLIPIPGHHMVYNALAGT---- 110

Query: 324 AIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRT 378
           A+G+  +L LE     +E L  V GRF  + T   G    VD  + +N + M    ++ T
Sbjct: 111 AVGLTYSLSLEEIKAGIESLQPVSGRFHIIDT---GKYTVVDDCYNANPVSMKASLDVLT 167

Query: 379 ITSGRIIVVFGCGGD 393
              GR + + G  G+
Sbjct: 168 DALGRKVAILGDMGE 182


>gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
          Length = 456

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL   LS   +   +   + VS DSR+I+ G +FVA+ G + DGH ++    A+GA  
Sbjct: 7   FNELAQALSARVLS-SDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLNDVAAKGAVG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    +         S  P L+V +TR  L    +         + A+TG+SGK++V 
Sbjct: 66  ALVQREVA--------DSALPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVK 117

Query: 131 SFVQQICQRSG 141
             +  + +  G
Sbjct: 118 ELLAGVLRTRG 128


>gi|323699053|ref|ZP_08110965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           ND132]
 gi|323458985|gb|EGB14850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans ND132]
          Length = 434

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 35/193 (18%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           +VG  E GH          A+ IV+S    ++   A +    P   V +  +F S F   
Sbjct: 66  VVGPHEKGHF-------ADADVIVLSPGVPVRKL-APVLEGVPARNVVSELEFASWFIE- 116

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   ILAVTG++GK++  + + +I +++G   F  G             +  P   
Sbjct: 117 ------APILAVTGSNGKTTTTTLISEILEKAGRRVFTGG------------NIGVPLCE 158

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           YL      L  +    + +E SS  L Q+ L   K   G F N   +H+DYH     Y +
Sbjct: 159 YL------LDMEPAEIIVLEVSSFQL-QNCLR-FKPHVGLFLNFSANHLDYHADLDEYLD 210

Query: 229 AKMRLFEELLPKE 241
           AK+ LF  + P++
Sbjct: 211 AKLHLFSRMGPED 223


>gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Paris]
 gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Paris]
 gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 445

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 149/368 (40%), Gaps = 33/368 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+              +
Sbjct: 20  ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLID--------GVH 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P  VV +    L+  A+    +    I+A+TG++GK++V   +  I  +          
Sbjct: 72  IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQP--------- 122

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207
            S  +    +N +  P S + L K   Y   + G  H    A + G+ Q     + LI  
Sbjct: 123 -SHATKGNLNNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQ---PDVSLI-- 176

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H++   +      +K  + + L P    AI+  DDAY+        +     
Sbjct: 177 --NNIAPAHVEGFGSIDGVARSKGEIHQGLSPT-GVAIVNDDDAYAHFWDDLIADKKILR 233

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S  +             H +   T+ +     +    +PG   V NAL AA  C A+GI
Sbjct: 234 FSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGI 293

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRII 385
               +   L     V GR   +   ++     +D  + +N L  +L  +  ++   GR I
Sbjct: 294 SGNDIQRGLAHFGGVKGRMTMLSGQNQ--STVIDDTYNAN-LRSVLTALEVLSGRPGRKI 350

Query: 386 VVFGCGGD 393
            VFG  G+
Sbjct: 351 FVFGDMGE 358


>gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
 gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
          Length = 453

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 146/370 (39%), Gaps = 44/370 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I EV++D+R + AG +FVA+ G +           A    A  V++       S  +  
Sbjct: 23  QIIEVTTDTRQVTAGCLFVALKGER---------FDAHAFAADAVAAGAGALLVSKRLLV 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV      I +  G   +  G
Sbjct: 74  DVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMAAAILRECGEVLYTAG 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--------GVTHVSVEASSHGLDQHRLD 200
                 +F  D        I +   L  L  Q        G  H+   A +  L + +  
Sbjct: 134 ------NFNND--------IGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQ-- 177

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     NL   H++   +      AK  +F   LP +  AII AD+          
Sbjct: 178 -----TALVNNLAAAHLEGFGSLAGVAQAKGEIFTG-LPADGVAIINADNNDWPHWQSML 231

Query: 261 HNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           ++    R      +G       V       Q T+           PLPG   V NAL AA
Sbjct: 232 NDKTVWRFSPQAAEGVDFFASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNVANALAAA 291

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377
            L +++G     V + L++L  VPGR   +       ++ +D ++ +N  S+    + + 
Sbjct: 292 ALAMSVGASLEAVRQGLKQLQGVPGRLFPIALTEN--KLLLDDSYNANVGSMTAAAQVLA 349

Query: 378 TITSGRIIVV 387
            +   R++VV
Sbjct: 350 EMPGYRVMVV 359


>gi|257389186|ref|YP_003178959.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286]
 gi|257171493|gb|ACV49252.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286]
          Length = 817

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 13/180 (7%)

Query: 292 TISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEF 348
           ++S+ G ++  +   PL G  Q  NA +AA LC  +  +D A +   L   H  PGRFE 
Sbjct: 239 SVSIAGDEWGVETKLPLLGAHQAINAGIAATLCRQVSDVDEATIARGLRNAH-WPGRFEI 297

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +G   R   + +D AH    +E +++ +       + VV G   D+D   R I G  ALD
Sbjct: 298 MG---RDPLVVLDGAHNPGGVERVVETLAAFDYDELHVVAGSMVDKDL--RAIAG--ALD 350

Query: 409 LADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAG 466
            AD  +  + D  R+ED + +           +E  + +  A   A++   + D ++V G
Sbjct: 351 GADHVVACEPDRDRAEDEQVVAKAFRDETAASVETRSDVAGAFDVALDGAGEDDCVLVTG 410


>gi|262316882|emb|CAZ44331.1| putative UDP-N-acetylmuramoylanalyl-D-glutamate-2-6-diaminoligase
           [Raphanus sativus]
          Length = 137

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 24/106 (22%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---------------GNRI 446
           M KIA + +D+ ++T DNP +EDP  I  +++ GI   +++               G+R+
Sbjct: 1   MTKIATEKSDVTMLTSDNPGNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRL 60

Query: 447 -------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                   A+R A+ M  + D++VVAGKGHE   +   G+KK   D
Sbjct: 61  FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQL--EGDKKEFYD 104


>gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 550

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VSSDSR I+AG +FVA+ G K DGH F+ + + +GA  +V+ S          +     +
Sbjct: 59  VSSDSRTIEAGDLFVALRGEKFDGHRFVAEVVRKGAAGLVLESPPEEPLPVPVVLVADTL 118

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             + +   +  +    L       +LA+TG+SGK++V      I +
Sbjct: 119 QALGDLAHYRRMQMKGL------KVLAITGSSGKTTVKEMTAAIME 158


>gi|257095425|ref|YP_003169066.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047949|gb|ACV37137.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 860

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 130/327 (39%), Gaps = 46/327 (14%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S+FA     + P  ++AV GT+GK++    +  I    GL   ++G T+T   + +  R+
Sbjct: 460 SMFADGDDARIP--LVAVAGTNGKTTTVRLIASILGEQGL---RVGMTTTDGVYVEGRRI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI--DY 219
            T        A + L   GV    +E +  G+ +  L   +      TN+G  DH+   Y
Sbjct: 515 DTGDCSGPKSARNVLLHPGVDAAVLETARGGVLREGLGFDRCDVAVVTNIGLGDHLGLSY 574

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             T +     K  + + + P    A++ A D     V + A +  C      +     H 
Sbjct: 575 ISTVEDLSVVKRVIVQNVTPVSGVAVLNAADPM---VARMADS--CPGTVTFFACDRNH- 628

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGE-------------------FQVYNALVAAG 320
             + A+H  Q+  +    +D D L    G                    FQV NA+ A  
Sbjct: 629 -PLMAMHRAQRKRVVY--RDGDALVASGGGVEHRLALAAIPVTQKGAIGFQVENAMAAVA 685

Query: 321 LCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              A+G+D A +   L          PGRF     + RG  +  DY H  ++++ ++  +
Sbjct: 686 AAWALGVDWATIRSGLASFVNDAQTAPGRFNVF--SYRGATLIADYGHNPDAIQALVNAV 743

Query: 377 RTITSG----RIIVVFGCGGDRDQGKR 399
             + SG    R +V+ G G  RD+  R
Sbjct: 744 DNLPSGPGSKRSVVISGAGDRRDEDIR 770


>gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 480

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 132/343 (38%), Gaps = 42/343 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E +     SDSR    G +FVAI G + DGH F+ +   QGA   +V            +
Sbjct: 21  ESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQGATVAIVDH---------EV 71

Query: 87  RSN-TPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRS 140
           +S+  P +VV +T   L   A     +  E     +I+ +TG+ GK++    +  +    
Sbjct: 72  KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA-- 129

Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                 +GPT + + SF  +  L   +         +++  G +H+   A        RL
Sbjct: 130 -----TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RL 176

Query: 200 DGIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             I     +    +G  H+    +++    AK  + + LL   + A++ ADD +   V+ 
Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLTGGT-AVLNADDEH---VVP 232

Query: 259 RAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVY 313
            A  A   VL  G    Q   +    V A  +       +  +G        +PG   V 
Sbjct: 233 MAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 292

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355
           NAL AA + +  G+    V   L   H + P R      N  G
Sbjct: 293 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 335


>gi|170755898|ref|YP_001779747.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra]
 gi|169121110|gb|ACA44946.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra]
          Length = 873

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 143/359 (39%), Gaps = 51/359 (14%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  ++G T+T   +  +  +          A + L+++ V    +E +  GL +  L  
Sbjct: 501 FSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIRDGLPY 560

Query: 202 IKLIAGSFTNLGRDHIDYHQTQ----QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH+           AY  A   L  E + K+   +I ADD  S  ++
Sbjct: 561 DLADVGIITNVTEDHLGLGGINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASISII 617

Query: 258 KR--------AHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDF 300
            R          N    ++S     K          I+LKK+    NK +  I+V     
Sbjct: 618 NRIKSKIILFTKNKNNPIISQHLDNKNLVLYLDEDTIYLKKL----NKNEEIINVN---- 669

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355
                L G+  + V NA+ A    IA+G+D   + + LE        PGRF     N  G
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMY--NVHG 727

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   +
Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYVYI 787

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464
            +D  +        A+++    G +E G          +  EA++ AIE  N  D++++
Sbjct: 788 KEDRDKRGRKHGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844


>gi|325293467|ref|YP_004279331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
 gi|325061320|gb|ADY65011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
          Length = 469

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 25/150 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + SG  + Q+G     +  + D            KA  + 
Sbjct: 117 IAITGTNGKSTTTALIAHILKASGRDT-QLGGNIGTAVLSLDP----------PKAQRFY 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      I   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 166 V--------VECSSYQIDLAPT--INPTAGILLNLTPDHLDRHGTMQHYADVK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +     AI+  DD+YS  +  R   AG +V
Sbjct: 212 VAGSGTAIVGVDDSYSTLIADRIERAGVKV 241


>gi|187479349|ref|YP_787374.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella avium 197N]
 gi|109892693|sp|Q2KVG1|MURC_BORA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115423936|emb|CAJ50488.1| UDP-N-acetylmuramate--alanine ligase [Bordetella avium 197N]
          Length = 468

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 107/260 (41%), Gaps = 37/260 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S V  +    GL      PT     F    RL +      A A + L
Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGGLD-----PT-----FVIGGRLNS------AGANAQL 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG   + VEA     D   L+ + ++A   TN+  DH+D +    A   +    F + 
Sbjct: 152 G-QG-EFIVVEADES--DASFLNLLPVMA-IITNIDADHMDTYGHDVARLKSAFIEFTQR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296
           LP    A++ ADDA  +E+M         + + G      +  + V A   + + ++  +
Sbjct: 207 LPFYGSAVLCADDANVREIMPFVSRP---ITTYGLSSDAQVRAENVQADGTRMRFSVRRQ 263

Query: 297 GKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----E 347
           G++ D         LPG   V NAL A  +   +G+  A + + L     V  RF    E
Sbjct: 264 GREQDLPTLEVELNLPGLHNVRNALAAIAVASELGVADAAICQALAGFKGVGRRFTQWGE 323

Query: 348 FVGTNSRGGRIYV---DYAH 364
           F    ++GG  Y    DY H
Sbjct: 324 FPVAEAQGGGRYSVIDDYGH 343


>gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
 gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
          Length = 442

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 16/112 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V +DSR ++ G +F+AI G + DGH FI +A AQGA A VV   Y++   +     
Sbjct: 19  EITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVVK--YAVDGIT----- 71

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI----LAVTGTSGKSSVASFVQQI 136
             P  VV +    L    +++   H  NI    +A+TG++GK++    +  I
Sbjct: 72  -IPQFVVPDPLHAL----AKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAI 118


>gi|28572689|ref|NP_789469.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27]
 gi|28410821|emb|CAD67207.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27]
          Length = 475

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 20/191 (10%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLS 269
           N+  DH+DY+ +Q A    +   F+  L     A+I  DDA   K   K   ++G R   
Sbjct: 189 NISMDHVDYYGSQSAL---EGSFFDFSLRSSDAAVISLDDAACIKIASKLLQSSGSR--- 242

Query: 270 VGYQGKFIHLKK-----VC----AIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAA 319
            G   + I   K     VC       N  + T+S EG+ ++  F  L GE    N   A 
Sbjct: 243 -GPSKRVITFGKNRSADVCLYEMGCMNPARFTVSYEGRFYNAGFKGLFGEHHAVNTCAAL 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            + + +G   +  LE +        R E  F      G +I+ DYAH    +   L  IR
Sbjct: 302 SVLLCLGYGISESLEAILSFSGTRRRLELHFDSGGKDGIKIFDDYAHHPREIRTALTAIR 361

Query: 378 TITSGRIIVVF 388
           ++   R+I +F
Sbjct: 362 SVQHTRLIALF 372


>gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
 gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
          Length = 457

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 156/380 (41%), Gaps = 46/380 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA  +V  S
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENGA--VVTLS 68

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +        +N P ++VD+      + A+    K   ++ AVTG++GK++    +  
Sbjct: 69  EKEI--------ANHPYILVDDVLTAFQILAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194
           +       S +     T  ++  +N +  P  +           +G   + +E    H  
Sbjct: 121 LL------STKYKTYKTQGNY--NNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 165

Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           D H L  +     +   L G  H+ + + +      KM++ + + P +S  +  AD    
Sbjct: 166 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAP-DSLLLAPAD---- 220

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +++       +V+  G QG  + +  +  +  K  +T      +     P+ G++   
Sbjct: 221 -PIVENYLPTDKKVVRFG-QGAELEITDL--VERKDSLTFKANFLEQVLDLPVTGKYNAT 276

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NA++A+ + +  G+    + +  + L +   R E+    + G  I  D Y     ++++I
Sbjct: 277 NAMIASYVALQEGVSEEQIRQAFQNLELTRNRTEWKKA-ANGADILSDVYNANPTAMKLI 335

Query: 373 LKNIRTITS---GRIIVVFG 389
           L+    I +   G+ I V  
Sbjct: 336 LETFSAIPANEGGKKIAVLA 355


>gi|322804391|emb|CBZ01941.1| cyanophycin synthase [Clostridium botulinum H04402 065]
          Length = 873

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 143/359 (39%), Gaps = 51/359 (14%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  ++G T+T   +  +  +          A + L+++ V    +E +  GL +  L  
Sbjct: 501 FSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIRDGLPY 560

Query: 202 IKLIAGSFTNLGRDHIDYHQTQ----QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH+           AY  A   L  E + K+   +I ADD  S  ++
Sbjct: 561 DLADVGIITNVTEDHLGLGGINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASISII 617

Query: 258 KR--------AHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDF 300
            R          N    ++S     K          I+LKK+    NK +  I+V     
Sbjct: 618 NRMKSKIILFTKNKNNPIISQYLDNKNLVLYLDEDTIYLKKL----NKNEEIINVN---- 669

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355
                L G+  + V NA+ A    IA+G+D   + + LE        PGRF     N  G
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMY--NVHG 727

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   +
Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGESFDYVYI 787

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464
            +D  +        A+++    G +E G          +  EA++ AIE  N  D++++
Sbjct: 788 KEDRDKRGRKHGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844


>gi|295107917|emb|CBL21870.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus obeum A2-162]
          Length = 459

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 136/382 (35%), Gaps = 76/382 (19%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAV 120
           I  G  A  +S +  +  ++A I  + P       +    L  ++L G+   N    +AV
Sbjct: 57  IFYGQRASNISDSVQVVVYTAAIHPDNPEFACAKEKGLPMLTRAQLLGQIMRNYDTSIAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----------AQDNRLTTPSPIYL 170
            GT GK++  S +  I  +      +  PT ++              Q     T +  Y 
Sbjct: 117 AGTHGKTTTTSMLSHILLKG-----ECDPTISVGGILPAIGGNIRVGQSETFLTEACEYT 171

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS+  + G+                            N+  DH+D+ +         
Sbjct: 172 NSFLSFFPTLGI--------------------------ILNMDADHLDFFKDIDD-IRHS 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------------GKFIH 278
            R F ELLP +   II AD    + V   A N  C+V++ G +             +F H
Sbjct: 205 FRKFAELLPADGALIINADTPKYEMV---AENLPCKVITYGLEHDAEYTASDITYDEFGH 261

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                 +HN + + I            +PG   V NAL +      + +D+ ++   L+ 
Sbjct: 262 -PTFHVLHNGEDIGICS--------LKVPGIHNVSNALASIAAGRLLDLDNEVIFAGLKD 312

Query: 339 LHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRD 395
                 RF++ G   + G + +  DYAH    +E  L         +I  VF      R 
Sbjct: 313 FGGTDRRFQYKG---KVGEVTIIDDYAHHPTEIEATLHAAHNYPHKKIWCVFQPHTYTRT 369

Query: 396 QGKRPIMGKIALDLADIAIVTD 417
           +   P   K AL LAD  ++ D
Sbjct: 370 KALLPEFAK-ALTLADHVVLAD 390


>gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 469

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 148/357 (41%), Gaps = 65/357 (18%)

Query: 33  VSSDSRHIQAGWIFVAIVG-NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           V  +S+ IQ G +F+A+   N  DGH F+  A+A+GA+A++VS    L D +    +N  
Sbjct: 27  VQFNSKDIQPGDLFIALQSENGGDGHQFVKDALARGADAVIVS---KLIDNN----TNDK 79

Query: 92  ILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           I++V+NT   LS  A+ R         + +TG+ GK+S     ++I  +   + ++   +
Sbjct: 80  IILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTS----TKEIMFKVFSTHYKTFAS 135

Query: 151 STISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               +      L   S PI    A+  L ++          S G  Q  +  + L     
Sbjct: 136 RKNFNNLLGMLLNLASVPINTEYAIFELCTR----------SPGELQKLVKILPLNIAVL 185

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG----- 264
           TN+   H ++  + +    AK  +F  L+ K   A+I +D  +  + ++  +  G     
Sbjct: 186 TNINSAHTEFFNSLEHLTEAKCEIFNGLVNK-GIAVINSDSMFFTKQLEYINKLGINNVF 244

Query: 265 ---------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN- 314
                     R+L+  Y           A + K  + I+  G D  F   + G  Q +N 
Sbjct: 245 TFGTHQLSNSRILNYYYD----------ADNQKSVININCNGYDLQFYTQILGYGQAFNI 294

Query: 315 --ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              ++ + +C    I+   V E +  L    GR          G+IY+   H+++S 
Sbjct: 295 AAVMLVSNIC---KINLNKVTEVINTLRNYEGR----------GKIYLLNFHSNSSF 338


>gi|326803773|ref|YP_004321591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651338|gb|AEA01521.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 462

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 131/294 (44%), Gaps = 38/294 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S + +I Q  G      G T    +            I    A   
Sbjct: 117 VIGITGSNGKTTTTSLLGEILQ--GAKEL-TGKTEVAGNIG----------IPALTASQG 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           LSSQ    + +E SS  L    ++  +    +  +L   H+DYH + + Y  AK R+ + 
Sbjct: 164 LSSQ--DRLVLELSSFQL--MGIETFRPHIAAIIDLYPTHLDYHGSIENYLAAKWRITKN 219

Query: 237 LLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             P +     Y    Y +E++ ++A  +  +++ +  + +     +  A +N+++ T+  
Sbjct: 220 QGPDD-----YLLLNYDQEILWQKAKESSAQIIPISIESEL----EKGAWYNEKEGTLMW 270

Query: 296 EGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +     + LF LPG+  V NALVA  +   +G+ +A +     + H V  R +FV   
Sbjct: 271 GSETVLKREDLF-LPGKHNVQNALVALAIAKLLGVSNASIQTACSQFHGVKHRIQFV-DQ 328

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKI 405
            +  R Y D   T+N       +I  + S +  +V+  GG DR  G + ++ ++
Sbjct: 329 IKERRFYNDSKATNNE-----ASITALRSFKEPLVWIAGGLDRGNGVKELLKEL 377


>gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 471

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 40/244 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F A  G++ DGH +              + A       AT     P +VV
Sbjct: 34  DSRAVEPGSLFAAFRGDRVDGHDYA-----------EQAVAAGAAAVLATRPLGVPAIVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+ +  L   A  +  +    ++A+TG++GK+S    + Q+ QR G + +  G       
Sbjct: 83  DDVQSALGRLARFVVERLGTKVVALTGSAGKTSTKDLIAQVLQRKGPTVWTPG------- 135

Query: 156 FAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHR----LDGIKLIAGSFT 210
            + +N +  P        L+ L +++   H+ +E  + G+   R    L   ++  G   
Sbjct: 136 -SLNNEIGLP--------LTALRATEETEHLVLEMGARGIGHIRYLTELTPPRI--GLVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCRV 267
           N+G  HI     ++    AK  + E L P       A++ ADD   + +  R      RV
Sbjct: 185 NVGTAHIGEFGGREQIAQAKGEMVESLPPAGEDGGVAVLNADDPLVRAMASRTK---ARV 241

Query: 268 LSVG 271
           L  G
Sbjct: 242 LLFG 245


>gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum rubarum]
          Length = 495

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 12/112 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R ++   +FVA+ G+  DGH ++ +A  +GA A +VS          ++ +  P+
Sbjct: 36  VSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARAALVSR---------SVEATGPL 86

Query: 93  LVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQQICQRSG 141
           L+V +TR  L   A  +  K     + ++ +TGT+GK++    +  +    G
Sbjct: 87  LIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSAEG 138


>gi|328471997|gb|EGF42874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus 10329]
          Length = 437

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 123/304 (40%), Gaps = 39/304 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL+   +G    I                   AL  
Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLT---VGVGGNIG----------------VPALEL 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L      +V +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F+ 
Sbjct: 151 LEQDADLYV-LELSSFQLETTS--SLKLNAAAFLNLSEDHMDRYEGMADYRAAKLRIFD- 206

Query: 237 LLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                  A++  DD  +  EV       G    + G +   +   +   + + Q+V  S 
Sbjct: 207 ---NAELAVVNRDDQETYPEVEMPVVTFGSDEQAYGLE---VDGSRTWLLDHGQRVIASD 260

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E K       L G+  + NALV   L  A G+D    L  L+    +  R + V  N RG
Sbjct: 261 ELK-------LVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-RG 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAI 414
            +   D   T+ +  M   +    T    ++V G G   D    +PI   + L L    +
Sbjct: 313 VKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGL 372

Query: 415 VTDD 418
             DD
Sbjct: 373 DGDD 376


>gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
 gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
          Length = 476

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 156/374 (41%), Gaps = 45/374 (12%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR+   G IF+A+ G   +G+ F   A+ +G    +V  A   +        N  
Sbjct: 50  KVTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAE------AGNNR 103

Query: 92  ILVVDNTRKFLSLFASR-LYGKHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++VDN     +L A + L  +H  NI    + +TGT+GK++    +      S + + +
Sbjct: 104 FILVDN-----ALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELI------SAVLAEK 152

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLI 205
                T+ +F  D        I + + L  ++S     V    +SH  D  +L   ++  
Sbjct: 153 YKVHHTLGNFNND--------IGVPRTLLEMTSDDEIAVIEMGASHPKDIEKLVTYVEPT 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+GR H+    + +   N K  L++ L  K   A+++ +++    V         
Sbjct: 205 CGLITNVGRAHLQGFGSFEGVKNTKGELYDYL--KAHNALLFLNESNPDLVEMAEQREFE 262

Query: 266 RVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYNAL 316
           RV++ G       +G+ +    +     +   ++  E      ++    L G + + N L
Sbjct: 263 RVITYGQDNTADVKGEVVSCAPLLKFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNML 322

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A  + +  G++   +   LE    VP       T ++  ++ VD Y    +S++  ++N
Sbjct: 323 AAITIGLHFGVEPQKICHALESY--VPSNNRSQLTETKDNKLIVDAYNANPSSMKAAIEN 380

Query: 376 IRTITSGRIIVVFG 389
            R +     + + G
Sbjct: 381 FRLMDIKNKMAILG 394


>gi|260434248|ref|ZP_05788219.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260418076|gb|EEX11335.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 469

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 10/125 (8%)

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  R +++ Y+G   H      IH + + T+ +EG       P+PG+  V NAL A  + 
Sbjct: 248 ADVRAVNLTYKGGIAHFD----IHLQYEDTV-IEG----CTLPMPGDHNVSNALSAVAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+ +A + + L     V  RF  VG    G  I  DY H    +  +LK  R  T G
Sbjct: 299 RHLGMKTAQIRDALANFGGVNRRFTKVG-EVNGVTIIDDYGHHPVEIAAVLKAARQATEG 357

Query: 383 RIIVV 387
           R+I V
Sbjct: 358 RVIAV 362


>gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
 gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 446

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 31/242 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R IQ   +F+A+ G   D + FI +A  QGA   VV+           +++  P+
Sbjct: 25  VSTDTRTIQPDSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A     + P   + VTG+ GK++  + +  + ++ G         ++
Sbjct: 76  ICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209
             SF  +N +  P        L+ L  +   H ++    ++H  +   L G+ K      
Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAII 179

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G  H++   + +    AK  +FE  L  +  A+I  DD +++   + AH+   R++S
Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236

Query: 270 VG 271
            G
Sbjct: 237 FG 238


>gi|51473598|ref|YP_067355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           typhi str. Wilmington]
 gi|60390366|sp|Q68WW9|MURD_RICTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51459910|gb|AAU03873.1| D-glutamate ligase [Rickettsia typhi str. Wilmington]
          Length = 457

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 37/239 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+ A+ +  I   +GL     G                  P   AKA    
Sbjct: 107 IAITGTNGKSTTAALISHILNSNGLDYTVAGNIGV--------------PALQAKA---- 148

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S  G     +E SS  LD  ++  +K+      N+  DH+D +Q    Y  AK ++F+  
Sbjct: 149 SKDGYV---LELSSFQLDLVKIFTVKV--AVLLNITPDHLDRYQDMNGYIAAKAKIFDR- 202

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVE 296
           + K+S A+I  D+ Y +++          +L      K I       ++N    V   + 
Sbjct: 203 MDKDSYAVINIDNDYCRKIF--------LLLQREQLIKLIPFSVTKILNNGISIVDDKIH 254

Query: 297 GKDFDFLFPLPGEFQ-VYNAL-VAAGLCIA--IGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +  +  PL    Q ++N   +AA   ++  IG++S  +LE +     +  R +++G+
Sbjct: 255 DNNLTYKLPLNKNLQGLHNCENIAASYAVSKIIGVESKKILESISSFQSLHHRMQYIGS 313


>gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 447

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 50/375 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++KI   + DS+ +Q G +F A+ GN  DGH F+  A   GA A VVS  Y    F    
Sbjct: 23  DKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGDSFGLE- 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                ++ VD+T+  L    S         ++ +TG+ GK++   F + I   S +    
Sbjct: 82  -----LIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTIL--SSIYKTH 134

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             P S       +++LT P  + +A+       + V  + +  S  G  Q  L  ++   
Sbjct: 135 ASPKSY------NSQLTVPLSLLMAEG-----DEDVMILEMGVSEPGNMQDLLRIVQPEI 183

Query: 207 GSFTNLGRDH-IDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261
              T++   H + + Q  Q     K  + +    +LLPK+SP   Y D         R+ 
Sbjct: 184 AVITHINDQHAMHFPQGIQEILKEKSYILQKSKLQLLPKDSP--YYLD--------LRSC 233

Query: 262 NAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQ--VYNALV 317
           +      S  +      L   C  AI      ++ ++  + ++  P+   ++    N L+
Sbjct: 234 SPTAEKFSFSFNDP---LADFCYKAISRD---SVVIQTPEENYCLPIAFSYKPAYTNLLI 287

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376
           A  L   + +    V+  L +L + P RFE    + R G   ++ A+ +    MI   + 
Sbjct: 288 AVALSWILEVPEEGVIRSLPELKLPPMRFEH---SMRNGMQVINDAYNACPEAMIAALDA 344

Query: 377 RTITS--GRIIVVFG 389
             + S  G+II++ G
Sbjct: 345 LPLPSDGGKIILILG 359


>gi|228469391|ref|ZP_04054405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
 gi|228309075|gb|EEK17705.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
          Length = 461

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 144/365 (39%), Gaps = 41/365 (11%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA R  G     ++A+TG++GK++  +++      +GL     G   T  S A+   L  
Sbjct: 97  FAYRYAGD--SMMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGT--SLARQVALA- 151

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQ 223
           P   Y+                +E SS  LD   +   +       N+  DH+D Y    
Sbjct: 152 PHAYYV----------------IELSSFQLDH--MYQFRAHIAILLNITPDHLDRYDHKM 193

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AKMR+ +   P +   I + +D +++ ++K       R +    +G       V 
Sbjct: 194 ELYARAKMRITQNQQPTDY-FISWIEDDWTQRLLKEPGMGAGRRIFFSTEGS--SDDAVV 250

Query: 284 AIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           A  +  Q+  +++    +       L G+  V NAL       A+GI   ++   LE   
Sbjct: 251 ASSHDGQLCFALQEPVLEMPESALALSGKHNVQNALAVGCAAQALGIKPEVIRALLETFT 310

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VP R E++ +      I    A   NS    L+++R  T    I++ G G D+      
Sbjct: 311 NVPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPT----ILILG-GTDKGNDYND 365

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +M  +   +  +  +T D+       K+       IP   E  +  +AI  A +M    D
Sbjct: 366 LMDLVKEKVVGLIYMTTDSA------KLHRSFDSVIPRHEEVTSMRDAIAAARQMAQAGD 419

Query: 461 VLVVA 465
            ++++
Sbjct: 420 TVLLS 424


>gi|83953993|ref|ZP_00962714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
 gi|83841938|gb|EAP81107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
          Length = 461

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 109/276 (39%), Gaps = 40/276 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+ ++ V  I + +G       PT    +  +      P+          
Sbjct: 116 IIAITGSNGKSTTSALVHHILKHAGR------PTQLAGNIGRGVLDIEPA---------- 159

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + V    +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 160 IDGEVVV---LELSSYQTDLAR--NLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAE 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLK-KVCAIHNKQQVTI 293
             P    A+I  D+   + +  +        RV+ V    K   L  +V A   K  ++ 
Sbjct: 215 GGPDR--AVIGVDEPEGRFLAGQLSEGAADDRVIRVSVDRKLTGLGWQVFA--RKGFLSE 270

Query: 294 SVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              GK     D   +  LPG     NA  A   C  +G    ++         +P R + 
Sbjct: 271 YRGGKQIGSIDLRSITGLPGAHNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQT 330

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTI 379
           VG    GG  +V+ +  +N    +      KNIR I
Sbjct: 331 VG--EAGGVRFVNDSKATNVDSAVKALAAFKNIRWI 364


>gi|330446844|ref|ZP_08310495.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491035|dbj|GAA04992.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 487

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 134/334 (40%), Gaps = 47/334 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  +V S+A S ++      +   I VV        L   R +G      +A+ GT G
Sbjct: 80  QGASVVVASTAISKENPELMAATELRIPVVRRAEMLAELMRYR-HG------IAIAGTHG 132

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  +   QI   +GL  +F  G    + S   + RL   S   +A+A     S+L  Q
Sbjct: 133 KTTTTALTTQIYSEAGLDPTFVNG--GLVKSAGTNARLGC-SRYLIAEADESDASFLHLQ 189

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V     +  +D +         G F  L +  ID+                  LP 
Sbjct: 190 PMVCVVTNIEADHMDTY--------GGDFEVLKQTFIDFLHN---------------LPF 226

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK- 298
              A++  DD   +E++ R    G  +L+ G+ +   + L        +   T+  +GK 
Sbjct: 227 YGLAVMCIDDPVVRELLPR---VGRPMLTYGFAEDADVRLVNYTQTGQQGHFTVQRKGKP 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GR 357
           + D    +PG+    NA  A  +    G+D   +L  L +      RF+ +G    G G+
Sbjct: 284 ELDITLNIPGKHNALNATAAIAVATEEGVDDDAILRALVEFEGTGRRFDHLGEFDTGNGK 343

Query: 358 IYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           + +  DY H  + +++ +K  R      R++++F
Sbjct: 344 VMLVDDYGHHPSEVDVTIKAARAGWEDKRLVMIF 377


>gi|189502458|ref|YP_001958175.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189497899|gb|ACE06446.1| hypothetical protein Aasi_1103 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 467

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 115/275 (41%), Gaps = 30/275 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +  DH+D ++ Q   F    + F   LPK+  AI++ D A  + +   ++    +V+ 
Sbjct: 189 TTVDPDHLDIYKDQDG-FEEGFKQFLSRLPKQGIAILHHDVA-KRLIDDESYPTQAQVIQ 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL----------FPLPGEFQVYNALVA 318
              +        +CA      + IS  G+  FD++           P+PG   + NAL  
Sbjct: 247 YALKDS-----PICA----DNIYISETGRFCFDYISEKFVIRDIQLPVPGYHNIENALAV 297

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIR 377
              C+ IGI   ++ E +     +  RF+ +    R   +++ DY H    +  +L  IR
Sbjct: 298 ITACLHIGIAPEIIREAIHTFQGIARRFDLI--IQRNDLVFIDDYGHHPVEITALLTTIR 355

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP-EKIRAE-II 433
            +   + + V        + K   + +IA  L LAD  ++ D     E P E I +E I+
Sbjct: 356 KLYPNKKVTVIFRPNQYSRTKD-FLQEIAQSLSLADCVLILDIYSDREVPIEGINSEAIL 414

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I    +     E +   +  ++K +V+V  G G
Sbjct: 415 QHITLPYKYACTKEDLVLQLAQVDKLEVVVNLGAG 449


>gi|307298495|ref|ZP_07578298.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915660|gb|EFN46044.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 447

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 16/184 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH++++           R F   + K    +  ADD  S+ +           L+
Sbjct: 174 TNVRGDHLEHYDNSFDNLKNHFRYFSRSVGK--LLVTNADDPASERIF-------TDTLT 224

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIG 326
            G  +G +    +   I N  Q      G +   LF L  PGEF VYNA  A  L   +G
Sbjct: 225 FGKDRGYYRFTDRSTGIMN--QTFRCFRGNEDLGLFKLMIPGEFNVYNATAAIALTHEMG 282

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGR-I 384
           +    +   LE    V  RF F G +  R    + DYAHT + +   ++  R    G+ +
Sbjct: 283 VPIESIKNSLESYRSVDRRFTFRGLDDFRNLFFFDDYAHTPDEISNTIRGAREFFPGKNV 342

Query: 385 IVVF 388
           IVVF
Sbjct: 343 IVVF 346


>gi|289663636|ref|ZP_06485217.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289671017|ref|ZP_06492092.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 477

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 126/331 (38%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IRDDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDSDHLENYGNDFARIQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+ S  +   LE    +  RF  +G  T S G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVASETIARALENFAGIGRRFNDLGEVTTSTGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
 gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
          Length = 469

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FV + G + DGH FI  A  +G  A +++ ++     +  + +    
Sbjct: 28  VSTDSRQVAPGELFVPLKGERFDGHDFITTAAGRGVTAFLMAESWLA---AHGLPAGASA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           + V++T + L   A+    +    ++AVTG++GK++    + +I  ++G
Sbjct: 85  VAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKTTTKEMLARILAQTG 133


>gi|153941125|ref|YP_001389483.1| cyanophycin synthetase [Clostridium botulinum F str. Langeland]
 gi|152937021|gb|ABS42519.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F
           str. Langeland]
 gi|295317584|gb|ADF97961.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F
           str. 230613]
          Length = 873

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 143/359 (39%), Gaps = 51/359 (14%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  ++G T+T   +  +  +          A + L+++ V    +E +  GL +  L  
Sbjct: 501 FSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIRDGLPY 560

Query: 202 IKLIAGSFTNLGRDHIDYHQTQ----QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH+           AY  A   L  E + K+   +I ADD  S  ++
Sbjct: 561 DLADVGIITNVTEDHLGLGGINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASISII 617

Query: 258 KR--------AHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDF 300
            R          N    ++S     K          I+LKK+    NK +  I+V     
Sbjct: 618 NRIKSKIILFTKNKNNPIISQYLDNKNLVLYLDEDTIYLKKL----NKNEEIINVN---- 669

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355
                L G+  + V NA+ A    IA+G+D   + + LE        PGRF     N  G
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMY--NVHG 727

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   +
Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYVYI 787

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464
            +D  +        A+++    G +E G          +  EA++ AIE  N  D++++
Sbjct: 788 KEDRDKRGRKHGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844


>gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 456

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 130/306 (42%), Gaps = 38/306 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR+I    +F+AI G   DGH F+ + + +G +A+V+            +    P 
Sbjct: 31  ISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGVKAVVIRDG-----MQHLLPEKFPY 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +V NT +     A  L+ +   NI  + +TG+ GK++    + ++ ++ G    +I  T
Sbjct: 86  WLVPNTLESFQKLA--LHKRRTLNIPVVGITGSVGKTTTKEMMGEVLKQLG----KIKLT 139

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA--- 206
                     +L   + I + + +  L S     +  +E    GL Q  ++ +   +   
Sbjct: 140 ----------QLNYNNEIGVGRTI--LDSDFKDKILIIEMGMRGLGQ--IENLSKFSEPD 185

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263
               TN+G  HI    +++    AK  + + L P     II A+D + +E +K+  +   
Sbjct: 186 IAVITNIGSSHIGILGSKENITYAKCEITKYLKP-SGVVIIPANDLFLEETLKKNWSGRI 244

Query: 264 -GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               +L +  +   I+ K +    N+   +I +E K F+    L G    +N L    + 
Sbjct: 245 IKVDLLDINQKVDSINKKNLIGFFNRSNNSIIIEDKLFE--ISLKGFHNAFNFLFVYAVA 302

Query: 323 IAIGID 328
              GI+
Sbjct: 303 KEFGIE 308


>gi|28897232|ref|NP_796837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839040|ref|ZP_01991707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366058|ref|ZP_05778524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878313|ref|ZP_05890668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896402|ref|ZP_05904898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|33301382|sp|Q87SG6|MURD_VIBPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28805441|dbj|BAC58721.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747468|gb|EDM58416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087563|gb|EFO37258.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093171|gb|EFO42866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111373|gb|EFO48913.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
          Length = 437

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 123/304 (40%), Gaps = 39/304 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL+   +G    I                   AL  
Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLT---VGVGGNIG----------------VPALEL 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L      +V +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F+ 
Sbjct: 151 LEQDADLYV-LELSSFQLETTS--SLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDH 207

Query: 237 LLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                  A++  DD  +  EV       G    + G +   +   +   + + Q+V  S 
Sbjct: 208 ----AELAVVNRDDQETYPEVEMPVVTFGSDEQAYGLE---VDGSRTWLLDHGQRVIASD 260

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E K       L G+  + NALV   L  A G+D    L  L+    +  R + V  N RG
Sbjct: 261 ELK-------LVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-RG 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAI 414
            +   D   T+ +  M   +    T    ++V G G   D    +PI   + L L    +
Sbjct: 313 VKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGL 372

Query: 415 VTDD 418
             DD
Sbjct: 373 DGDD 376


>gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
          Length = 456

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       +  V +DSR  Q G +FVA+ G   D H F+P  +A+GA AIV     S  
Sbjct: 19  LPQPAENHPVCRVITDSRQAQEGDLFVALAGENHDAHDFVPDVLAKGARAIV-----SRS 73

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           D +          V D       + A+     +P  +  +TG+SGK++V   +  + +
Sbjct: 74  DLAGVAGC---FFVPDTLHALQQMAAAWRKAVNP-FVFGITGSSGKTTVKEMLAAVLR 127


>gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
 gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
          Length = 472

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E   + VS D+R I  G +FVA+  +  DGH F+  A+ +GA A +V+           +
Sbjct: 20  EWAASGVSIDTRTIAKGDLFVALA-DIRDGHDFVGMALDKGAAAALVTHRPE------GV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             + P+L+V N  K L    S    +    ++ +TG+ GK+S    ++ + Q  G
Sbjct: 73  ADDAPLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKTSTKEMLRTVLQAQG 127


>gi|83648524|ref|YP_436959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
 gi|118595658|sp|Q2S9Z0|MURD_HAHCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83636567|gb|ABC32534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
          Length = 446

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 155/354 (43%), Gaps = 48/354 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ILA+TG++GKS+V + V ++ +  G++             A    L TP        L  
Sbjct: 110 ILAITGSNGKSTVTTLVGEMAKACGVN------------VAVGGNLGTP-------VLDL 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+ +   +V VE SS  L+    D +  +A +  NL  DH+D +    AY  AK+R+F  
Sbjct: 151 LADEVELYV-VELSSFQLETT--DRLGALAATVLNLSEDHMDRYADMMAYHLAKLRVFYG 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTIS 294
              +    ++  DDA ++  + R        L     G++  +  K    +    +  + 
Sbjct: 208 CRRQ----VLNRDDALAQPPLSREAEITWFTLKTPEPGQYGVLEEKDGAWLAYGAEKLLP 263

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           VE         + G+    NAL A  L  A G++    L+ L +   +  R E+V    +
Sbjct: 264 VE------QMRIRGKHNWSNALAALALADAAGLEREPCLQALREFTGLTHRCEWVA--DK 315

Query: 355 GGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLAD 411
            G  Y++ +  +N  + +  L  +  +TSG I+++  CGG  + Q   P+   +   ++ 
Sbjct: 316 DGVAYINDSKATNVGATQAALAGLGPVTSGGIVLI--CGGQGKGQDFTPLAPAVKEWVST 373

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + I+ +D P      K++  +  G+     +    EA++ A E  +  D+++++
Sbjct: 374 LIIIGEDGP------KLKEALAGGVMALSAE-TMEEAVKLAAEKSSPGDLVLLS 420


>gi|54297666|ref|YP_124035.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
 gi|53751451|emb|CAH12869.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
          Length = 455

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 29/304 (9%)

Query: 86  IRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           I+   P+L  V+++ + ++S     A  +  K+   ++AV GT GK++  S +  I  ++
Sbjct: 73  IKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQA 130

Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G++  F IG    +SS    +        ++ +A  Y S+                 H  
Sbjct: 131 GMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHYR 179

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             I ++     NL  DH D +    A    +       +PK   AI   DD    EV+ R
Sbjct: 180 PNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLSR 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              +  R+ ++   G+   + ++      Q   +   G   +  +PL G+F V N L A 
Sbjct: 235 GQFS--RIETLALSGEAEWVAELIDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAI 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 G++  +  + LE+   V  R E V +N  G  +Y D+AH   ++   +  ++  
Sbjct: 293 AATWNAGVNPVVAAKALEQFSPVKRRLE-VRSNRHGVTVYDDFAHHPTAITKTIDALK-- 349

Query: 380 TSGR 383
            SGR
Sbjct: 350 RSGR 353


>gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
 gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
          Length = 478

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 49/300 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R +  G +FVA+  +  DGH F+  A+ +GA A +V+           +  N P+
Sbjct: 26  VSIDTRTLAPGDLFVAL-KDVRDGHDFVAMALEKGAGAALVTH------VPEGVAENAPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-----VASFVQQICQRSGLSSF-- 145
           L+V++  + L    +    +    ++AVTG+ GK+S     +A F  Q    + + S+  
Sbjct: 79  LIVEDVLRALEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASVDSYNN 138

Query: 146 QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G   T++    D         +  P  I     L+ ++   V  V+  A+ H      
Sbjct: 139 HWGVPLTLARMPADTEYAVIEIGMNHPGEI---SPLAQMAKPDVAMVTTVAAVH------ 189

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                    +F N+    ++           K  +F+ L P    A+I AD  ++  +M 
Sbjct: 190 -------LEAFANVAEIAVE-----------KAAVFDGLQPG-GVAVINADIEHAAILMA 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +A +   R +  G  G    L  V    +   V    +G    F    PG     NAL A
Sbjct: 231 KAVDRRLREVEFGEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGA 290


>gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
 gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
          Length = 435

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 143/361 (39%), Gaps = 62/361 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TGT+GKS+  + V++I + +       G             L     IY       
Sbjct: 95  IIAITGTNGKSTTVALVERILKGASKRVIACGNYG----------LPLSEAIY------- 137

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +   +  VEASS+ L+   +D  K    +  N+  DH+ +H +   Y  AK ++F+ 
Sbjct: 138 ---ENAEYYVVEASSYQLE--FIDKFKPNIAAILNIAFDHLSWHGSMDNYIEAKKKIFKN 192

Query: 237 ------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                  +  +S + I+   A    V KR  NA C              K    ++  + 
Sbjct: 193 QLEDDFFIKNDSDSYIFDGKANLFLVSKRDRNADC-----------FFEKNGVIVNRPEY 241

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + I   G        L G     N   AA + +  GI+   + E +  +  +  R EFV 
Sbjct: 242 LRIDKTG--------LFGSKVFENIAFAALIGLLCGIEKKTIKEVVGTMSNLEHRIEFV- 292

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKR--PIMGKIAL 407
               G + Y D   T  +L+ +   I +   G +I+++ G     +   R  P++ K A 
Sbjct: 293 DEIDGVKFYNDSKAT--NLDAVEAAINSFDEGIKIVIILGGKHKGESYSRLLPLLEKRAR 350

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
                A+V       ED + I  E+   +P  +   N   A+R A E+ +K DV++ +  
Sbjct: 351 -----AVVV----YGEDRKVILNELDGFLPVPLPAVNIWGAVRAAFEVASKDDVVLFSPG 401

Query: 468 G 468
           G
Sbjct: 402 G 402


>gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
 gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
          Length = 487

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 139/349 (39%), Gaps = 57/349 (16%)

Query: 30  INEVSSDSRHIQA----GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           IN   ++SR I +      +FV I+G + D H FIPQ +  GA+A  +   + L    + 
Sbjct: 25  INGFFTNSREIGSLPFKNALFVPIIGERVDAHNFIPQVVENGAKAFFIKKGHEL---PSG 81

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           I     I V D      +L  + L+ +   NI  + +TG+ GK++    V      + LS
Sbjct: 82  IGETAAIEVEDTEA---ALLDTGLWYREKFNIPFIGITGSVGKTTTKEMVA-----AALS 133

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           S  I  T        ++ +  P  ++    L   +   +  + +       + H ++  K
Sbjct: 134 SINIHKTKG----NANSTIGLPLTLF---GLEPCNEAAIIEMGIS------EFHEME--K 178

Query: 204 LIAGS------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           L+         FTN+G  HI    +++     K+ +  +    +S   I ADD    +V 
Sbjct: 179 LVEAGRPNHAIFTNVGSAHIGNLGSKENILKEKLHI-TDCFTADSVLFINADDELLMKVA 237

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------------DFL 303
             A N+  R  +V +   F   +K  A      +TIS  G DF                 
Sbjct: 238 --AENSEFRPKNVKHIVTFGINEK--ADFYASSITISDSGTDFVANYKSENGEAVSEQIH 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               G   V NAL A  + + +GI  A+  + L +   +PGR   + +N
Sbjct: 294 LKTLGLHNVRNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGNIIKSN 342


>gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Lens]
 gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Lens]
          Length = 445

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 149/368 (40%), Gaps = 33/368 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+              +
Sbjct: 20  ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLID--------GVH 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P  VV +    L+  A+    +    I+A+TG++GK++V   +  I  +          
Sbjct: 72  IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQP--------- 122

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207
            S  +    +N +  P S + L K   Y   + G  H    A + G+ Q     + LI  
Sbjct: 123 -SHATKGNLNNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQ---PDVSLI-- 176

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H++   +      +K  + + L P    AI+  DDAY+        +     
Sbjct: 177 --NNIAPAHVEGFGSIDGVARSKGEIHQGLSPT-GVAIVNDDDAYAHFWDDLIADKKILR 233

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S  +             H +   T+ +     +    +PG   V NAL AA  C A+GI
Sbjct: 234 FSSLHPADIYAQDIRLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAACCYAVGI 293

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRII 385
               +   L     V GR   +   ++     +D  + +N L  +L  +  ++   GR I
Sbjct: 294 SGNDIQRGLAHFGGVKGRMTMLSGQNQ--STVIDDTYNAN-LRSVLTALEVLSGRPGRKI 350

Query: 386 VVFGCGGD 393
            VFG  G+
Sbjct: 351 FVFGDMGE 358


>gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
 gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
          Length = 474

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 148/363 (40%), Gaps = 43/363 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V  DSR + +G +FVA  G K DGH +   A+  GA A++ +                
Sbjct: 28  GSVEFDSRKVTSGGLFVAFDGEKVDGHDYAAAAVQAGAAAVLGTREV----------PGV 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P++VV +    ++  A  +  + P+  ++ +TG+SGK++    + Q+  R G +    G 
Sbjct: 78  PMVVVADALTAMARLARAVVDRLPQLTVIGLTGSSGKTTTKDLIAQLTARLGETVAPPG- 136

Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDGIKL 204
                SF  +N L  P + +    +  YL     ++G+ HV        L +     I +
Sbjct: 137 -----SF--NNELGHPYTALQAVPSTRYLVLEKGARGIGHVRY------LCEVAPPRISV 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +     N+G  HI    +Q+    AK  L E  LP +  A++ ADD     +  R     
Sbjct: 184 V----LNVGVSHIGEFGSQENIALAKGELVEA-LPADGLAVLNADDPLVDAMAGRTT--- 235

Query: 265 CRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            RV+  G +     ++ V        +   T+            L G  QV+N L AA +
Sbjct: 236 ARVVRYG-EAAHADVRAVDVTLDERGRPAYTLVTPEGSATVRLALTGRHQVWNTLAAAAV 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
              +G+    +   L +L +V  R   V   + G  +  D Y     S+ + L+ +  + 
Sbjct: 295 ARELGMPLVEIAVALGELGLVSTRRMDVFERTDGVTVIDDSYNANPASMSVALRALAGVG 354

Query: 381 SGR 383
           +GR
Sbjct: 355 AGR 357


>gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
 gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
          Length = 449

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 22/174 (12%)

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++ E SS  L+   +   K    +  N+  DH++ H T +AY  AK R+FE  +  E+  
Sbjct: 156 IAAEVSSFQLE--FIKNFKPKTAAILNITPDHLERHHTMEAYVQAKARIFEN-MNFENCI 212

Query: 245 IIYADDAYSKEV--MKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++ ADD Y+ E+  M   H   C + S+      G F+         + +++ IS +G  
Sbjct: 213 LLNADDKYTNELTEMANKHTNVC-LFSIQKNIDNGAFL---------DGEELVISYKGNK 262

Query: 300 FDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +        + G+    NAL A+ L    GI    +   L++   +P R EFV
Sbjct: 263 INICNKNELQIKGKQNYANALAASFLAFFSGISLEAIRAALKEFKGLPHRIEFV 316


>gi|254673379|emb|CBA08659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha275]
          Length = 260

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R    + +++ 
Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    + ++  A +  N+  DH+D +     Y + K 
Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           ++F      +   ++ ADDA+ +  MKRA   G  V  VG + +F+
Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGARGEMVF-VGTRSRFL 248


>gi|227494649|ref|ZP_03924965.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
 gi|226831831|gb|EEH64214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
          Length = 455

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 30/268 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + +AV G  GK++ +  +      +G+  SF +G    ++ F     L            
Sbjct: 103 DFVAVAGAHGKTTTSGMLAAALSAAGMDPSFAVG--GVVAGFGTGAHL------------ 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                QG   V+    S G   +    + L+    TN+  DH+D++ +++A F A    F
Sbjct: 149 ----GQGRFFVAEADESDGSFLNYTPRVALV----TNVEPDHLDHYGSREA-FEAVFDEF 199

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQ 289
              +  +   ++ ADD  +  + +R    G RV S G        + + + +V    +  
Sbjct: 200 VTRITADGALVVCADDPGASALGQRVLATGRRVWSYGLDSSVEGAQHLQISEVELHASGS 259

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +S   +       + G   V NA  A  + + +GI  +++ E L+       RFEF 
Sbjct: 260 SFLVSYGDETVAVHLNVSGLHNVLNATGALAVALDLGISLSVMAEALKAFTGTGRRFEFK 319

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           G  + G R++ DYAH  + +   LK  R
Sbjct: 320 GEVA-GKRLFDDYAHHPSEVAAALKQAR 346


>gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
 gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
          Length = 825

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 44/342 (12%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+   + DGH +IP+   +G +  VV+   ++    A+       L V NT + L  
Sbjct: 41  LFFALKSERNDGHNYIPELYRRGVKNFVVT---NVPKGYASDYPGANFLKVVNTLEALQR 97

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A R   +    I+ +TG++GK+ V  ++ Q+   S           T S  + ++++  
Sbjct: 98  LAERHRDEFNIPIVGITGSNGKTMVKEWLYQLLSPSMF--------VTRSPRSYNSQIGV 149

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P  ++L   ++  +  GV    +      L     D I+      TNLG  H +   + +
Sbjct: 150 PLSVWL---MNEQTQVGVFEAGISMPGEMLALR--DIIQPTIAVLTNLGAAHQENFSSME 204

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKK 281
                K+ LF      ++  +IY  DD    +V+    +         Y+G+  F  LK 
Sbjct: 205 EKCREKLILFH-----DAETVIYDGDDEVINKVIAEYPD---------YKGEKLFWSLKN 250

Query: 282 VCA------IHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             A      I  +Q VT+     +G++  F  P      V NA+++A +   +G+ +  +
Sbjct: 251 AEAPFYVKNIEKQQSVTVITYIYKGEEDSFSIPFIDNASVQNAIISAVVASKLGLSAEDI 310

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
            + + +L  V  R E V     G  +  D Y    NSL++ L
Sbjct: 311 DKRMTQLEPVAMRLE-VKVGQHGCTLINDSYNSDINSLDIAL 351


>gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
 gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
          Length = 471

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 40/236 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR    G +FVA VG + DGH F    +A GA A++ S    +           P 
Sbjct: 31  VVRDSREAVPGSLFVAFVGERVDGHDFAAAVVAAGAVAVLASRPVGV-----------PA 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF------- 145
           +VV++ +  L   A  +  +    ++A+TG++GK+S    + Q+ Q    + F       
Sbjct: 80  IVVEDVQAALGALARHVVNRLGATLVALTGSAGKTSTKDLIAQVLQTKAPTVFTPGSLNN 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   T  S  +D R            +  + ++G+ H+          ++  +     
Sbjct: 140 EIGLPLTALSATEDTRFL----------VLEMGARGIGHI----------RYLTELTPPK 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKR 259
            G   N+G  HI     ++    AK  L E L   E    AI+ ADD   + +  R
Sbjct: 180 VGVVLNVGSAHIGEFGGREQIAQAKGELVESLPAAEDGGAAILNADDPLVRAMASR 235


>gi|149186201|ref|ZP_01864515.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
 gi|148830232|gb|EDL48669.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
          Length = 469

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 125/341 (36%), Gaps = 61/341 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  +V S+A    +          I VV        L   R       + +AV GT G
Sbjct: 66  EGAAVVVTSTAVRRTNPEVAHALENRIPVVRRAEMLAELMRLR-------STIAVAGTHG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           K++  S +  +     L    I PT      I  +  + RL     +             
Sbjct: 119 KTTTTSMIASL-----LDCGAIDPTVINGGIIEQYGSNARLGDSDWMV------------ 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--- 238
                VEA        RLDG   +    TN+  +H+D++      F+     F E +   
Sbjct: 162 -----VEADESDGSFLRLDGTIAV---VTNIDPEHLDHY----GDFDGVKDAFVEFIHNV 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQV 291
           P    A++  D    + V+ +  +   RV++ G+  +      +C ++       N+  V
Sbjct: 210 PFYGAAVLCIDHPEVQAVIGKVRDR--RVVTYGFNLQ----ADICGVNVQPHEGGNRFDV 263

Query: 292 TISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +   G++     +   P+PG   V NAL A  + I +G    ++         V  RF 
Sbjct: 264 IVRQRGEEDRRIENVCLPMPGRHNVQNALAAIAVSIEMGCPDEVICNGFSSFGGVRRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            VG+ + G  +  DY H    +  +L+  R  T  R+I V 
Sbjct: 324 NVGSVA-GATVIDDYGHHPVEIRAVLEAAREATKNRVIAVM 363


>gi|260427001|ref|ZP_05780980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
 gi|260421493|gb|EEX14744.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
          Length = 467

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 119/301 (39%), Gaps = 58/301 (19%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++AVTG++GKS+ ++ +  I   SG                +D++L       + + 
Sbjct: 119 PPRVVAVTGSNGKSTTSALIHHILTSSG----------------RDSQLAG----NIGRG 158

Query: 174 LSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +  +   G   V V E SS+  D  R   +      FTNL  DH+D H     YF AK R
Sbjct: 159 VLDIDPPGDGGVVVLELSSYQTDLARA--LTPDVAVFTNLSPDHLDRHGGMGGYFAAKRR 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAH-----------NAGCRVLSVGY-----QGKF 276
           LF E  P     +I  D+A  + +  +             ++G R+   G+     +G  
Sbjct: 217 LFSEGGPDR--CVIGVDEAEGRYLANQMSEGAADDRVIRVSSGTRLSGPGWDVFARKGFL 274

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
              +K      +Q  +I     D   +  LPG     NA  A     A+G+   +V    
Sbjct: 275 TEWRK-----GRQVASI-----DLRQVRGLPGAHNHQNACAAYAAARALGVAPRVVEAAF 324

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                +P R + V     GG  YV+ +  +N ++  LK ++     R I    CGG   +
Sbjct: 325 MSFEGLPHRSQIVA--EAGGVAYVNDSKATN-VDAALKALQAFPKVRWI----CGGLMKE 377

Query: 397 G 397
           G
Sbjct: 378 G 378


>gi|253580421|ref|ZP_04857686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848151|gb|EES76116.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 467

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 137/370 (37%), Gaps = 52/370 (14%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAV 120
           I  G  A  ++    +  ++A I  + P       +    L  + L G+   N    +A+
Sbjct: 65  IYYGQRATNITDDVDVVVYTAAIHPDNPEFACAKEKGLPMLTRAELLGQIMRNYDTPVAI 124

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYL 177
           +GT GK++  S V  I     L +    PT ++         N     S  ++ +A  Y 
Sbjct: 125 SGTHGKTTTTSMVSHI-----LLAGDCDPTISVGGILPAIGGNIRVGNSETFVTEACEYT 179

Query: 178 SS--QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +S       +S+                       N+  DH+D+ +          R F 
Sbjct: 180 NSFLSFFPKISI---------------------ILNMDADHLDFFKDIDD-IRHSFRRFA 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQ 289
           ELLP +   II AD    +++++   +  C V++ G      YQ   I   K    +   
Sbjct: 218 ELLPADGTLIINADTPKYEDIIR---DLPCNVITYGLEHDADYQAADITYDK----YGHA 270

Query: 290 QVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             ++   G K   +   +PG   V NAL A  L   +G+   ++++ L        RF++
Sbjct: 271 SFSVLRNGVKVGSYYLKVPGIHNVSNALAAIALGHLLGLSEEVIIKGLGSFTGTDRRFQY 330

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIAL 407
            G    G  I  DYAH    +E  L         ++  VF      R +   P   K AL
Sbjct: 331 KG-EVAGVTIVDDYAHHPTEIEATLHAAHNYPHKKLWCVFQPHTYTRTKALLPEFAK-AL 388

Query: 408 DLADIAIVTD 417
            LAD  +V D
Sbjct: 389 SLADHVVVAD 398


>gi|59712810|ref|YP_205586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           fischeri ES114]
 gi|59480911|gb|AAW86698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Vibrio fischeri
           ES114]
          Length = 404

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 151/356 (42%), Gaps = 62/356 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V     ++ + +G+ +   G       FA  + L   + +Y+ +  S+
Sbjct: 74  VIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG----FAALDLLEQDAELYVLELSSF 129

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E +S          +KL A +F NL  DH+D +Q    Y  AK+R+FE 
Sbjct: 130 ---------QLETTST---------LKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEH 171

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                   I+  DD  +   +++       + S G+ QG +  ++K   I    + T+ +
Sbjct: 172 ----AEVCIVNRDDKQTYPDVEKT------LKSFGFDQGDYGCIEKD-GIEYLAKNTVPL 220

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G+  + N+LVA  L  A GI+    L+ L   + +  R + V  N+  
Sbjct: 221 LAANE---LGLVGKHNIANSLVAIALLDAAGINLDATLDTLRTYNGLTHRCQVVADNN-- 275

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G  +V+ +  +N    +         G++ ++ G       GK     +++  L D+ ++
Sbjct: 276 GIRWVNDSKATNVASTLAALSGLQLEGKLHLLVG-----GVGKGADFSELSPALHDLNLM 330

Query: 416 T------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   D   S DP  +  E ++            EAI T    LNK D+++++
Sbjct: 331 MYCFGEDGDQFVSLDPRSLLCETMN------------EAIATLYPTLNKGDMVMLS 374


>gi|74316138|ref|YP_313878.1| UDP-N-acetylmuramate--L-alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
 gi|109892754|sp|Q3SMH2|MURC_THIDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74055633|gb|AAZ96073.1| UDP-N-acetylmuramate--alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 463

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 131/339 (38%), Gaps = 47/339 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  IA GA+A+V S+A    +          I +V        L   R         +A+
Sbjct: 59  PSNIA-GADAVVTSTAVQESNPEVVAAREKKIPIVPRALMLAELMRLR-------QGIAI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++  S V  I   +G+      PT  I       +LT       A   +    Q
Sbjct: 111 AGTHGKTTTTSLVASILGEAGMD-----PTYVIG-----GKLT-------AAGTNARLGQ 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G   V+    S   D   L    +IA   TN+  DH+D +             F + LP 
Sbjct: 154 GDFLVAEADES---DASFLYLTPVIA-IVTNIDADHMDTYGHDFDRLKTAFVDFCQRLPF 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-----HNKQQVTISV 295
              A++  DDA  +E++ R       + + G+        +V A+     H + + T+  
Sbjct: 210 YGMAVLCIDDANVREILPRITKP---ITTYGFDPA----AQVRAVDTRFEHGQMRFTVKR 262

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-S 353
           EG  D D     PG   V NAL A  +   +G   A +++ L + H V  RF+  G + +
Sbjct: 263 EGMADLDVTLNQPGLHNVLNALAAIAVATEVGASDAAIVKALAEFHGVGRRFQRYGEHPT 322

Query: 354 RGGRIYV---DYAHTSNSLEMILKNIRTITSG-RIIVVF 388
           + G  Y    DY H    +   L   R    G R+++VF
Sbjct: 323 KDGGCYWLIDDYGHHPVEMAATLAAARGAFPGRRLVLVF 361


>gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029]
 gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
 gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029]
 gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
          Length = 447

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 50/375 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++KI   + DS+ +Q G +F A+ GN  DGH F+  A   GA A VVS  Y    F    
Sbjct: 23  DKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGDSFGLE- 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                ++ VD+T+  L    S         ++ +TG+ GK++   F + I   S +    
Sbjct: 82  -----LIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTIL--SSIYKTH 134

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             P S       +++LT P  + +A+       + V  + +  S  G  Q  L  ++   
Sbjct: 135 ASPKSY------NSQLTVPLSLLMAEG-----DEDVMILEMGVSEPGNMQDLLRIVQPEI 183

Query: 207 GSFTNLGRDH-IDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261
              T++   H + + Q  Q     K  + +    +LLPK+SP   Y D         R+ 
Sbjct: 184 AVITHINDQHAMHFPQGIQEILKEKSYILQKSKLQLLPKDSP--YYLD--------LRSC 233

Query: 262 NAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQ--VYNALV 317
           +      S  +      L   C  AI      ++ ++  + ++  P+   ++    N L+
Sbjct: 234 SPTAEKFSFSFNDP---LADFCYKAISGD---SVVIQTPEENYCLPIAFSYKPAYTNLLI 287

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376
           A  L   + +    V+  L +L + P RFE    + R G   ++ A+ +    MI   + 
Sbjct: 288 AVALSWILEVPEEGVIRSLPELKLPPMRFEH---SMRNGMQVINDAYNACPEAMIAALDA 344

Query: 377 RTITS--GRIIVVFG 389
             + S  G+II++ G
Sbjct: 345 LPLPSDGGKIILILG 359


>gi|26988072|ref|NP_743497.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida KT2440]
 gi|37999638|sp|Q88N75|MURC_PSEPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24982796|gb|AAN66961.1|AE016324_11 UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida KT2440]
 gi|313500436|gb|ADR61802.1| MurC [Pseudomonas putida BIRD-1]
          Length = 482

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 99/429 (23%), Positives = 169/429 (39%), Gaps = 68/429 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 73  AATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  
Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
           Q +  V     +        D +    G F  L +  +++      Y  A M L      
Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234

Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+LP+ + P + Y    +S+E   RA N    V   G Q  F  L++     +++ + +S
Sbjct: 235 EILPQVKRPTVTYG---FSEEADIRAIN----VRQQGMQTHFTVLRR-----DREPLEVS 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353
           V          +PG   V NAL    +    GI    +++ L     V  RF+  G    
Sbjct: 283 VN---------MPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQGVGRRFQVYGELPV 333

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            GG + +  DY H    +  ++K +R    S R+++V+     R    R +       L 
Sbjct: 334 EGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQP--HRYSRTRDLYDDFVQVLG 391

Query: 411 D--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           D  + ++ +  P  E+  P     ++ H I       P +IE+G  +  +     +L   
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPL--VKPLLRAG 449

Query: 460 DVLVVAGKG 468
           D+L+  G G
Sbjct: 450 DILLCQGAG 458


>gi|326333492|ref|ZP_08199733.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
 gi|325948692|gb|EGD40791.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
          Length = 472

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 145/355 (40%), Gaps = 61/355 (17%)

Query: 52  NKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF---- 105
            +E   +F+    +Q  G + ++VS+A         IR + P  V     K L ++    
Sbjct: 57  REEGATVFVGHDASQVDGVDTLIVSTA---------IREDNPEYVA-AVEKGLRIYPRSA 106

Query: 106 --ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDN 160
             AS + G+    +LAV GT GK++  S +    Q +G +     PT T+    + +  N
Sbjct: 107 GLASVMEGR---RVLAVAGTHGKTTTTSLLTVSLQAAGAA-----PTYTVGGELAASGTN 158

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                S +++A+A     S G   V                 K  A   TN+  DH+D  
Sbjct: 159 AAEGSSDLFVAEADE---SDGAFLV----------------YKPYAAVVTNVEADHLDQW 199

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T++AY     +    L P +   +   DD  + ++   AH+ G R + VG       L 
Sbjct: 200 GTEEAYREGFAQFVGRLAP-DGFLVAVIDDPGAADLRHVAHSLGRRFIGVGES----ELA 254

Query: 281 KVCAIHNKQQVTIS----VEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            V A+    + T S    V+G D        +PG   V +AL A  + + +G    L+  
Sbjct: 255 DVRAVDIVLEGTTSSFTVVDGLDELGRITLQIPGRHYVADALAALTVGLRLGHSFDLLKA 314

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVF 388
            LE       R E  G  + G R+Y  YAH  + +   L + R++   GR+IV F
Sbjct: 315 GLESFTGTRRRMERKG-EAAGVRVYDSYAHHPSEIAGDLVSGRSVAGEGRLIVAF 368


>gi|307298498|ref|ZP_07578301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915663|gb|EFN46047.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 441

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 46/292 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L+ K    ++ VTGT+GKS+  + ++ I        FQ G                    
Sbjct: 103 LWSKPRGTVIGVTGTNGKSTTVTMLRHIISGKNRKVFQGGN------------------- 143

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L+ ++ +   +  +E SS  L     + ++    +  NLG DH+DYH++   YF 
Sbjct: 144 -LGYPLAGVAEEVYDYYVLEVSSFQLKWFAEERVRFHLSAVINLGEDHLDYHRSIDDYFK 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           +K+R     L K +  I     A +   KE++K     G ++        F+ L +    
Sbjct: 203 SKLR-----LAKMTEGITVVPKAVADCQKELLK-----GSKLRP------FVALGEGFDS 246

Query: 286 HNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            +++ + +  +E +  D   P  G     N LV   +   IG+ +  V + L+    +  
Sbjct: 247 FDREHLRVRGIEFRTSD--LPFTGLHNYENVLVVLLISQLIGLSAEDVFQELKSYTFLSH 304

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           R + V      G  Y D +  +N+   +   +R+    + I++ G G ++D+
Sbjct: 305 RLQLV--RELEGVKYYDDSKATNA-HAVSAALRSFEPSKTILILG-GREKDE 352


>gi|296284497|ref|ZP_06862495.1| UDP-N-acetylmuramate--L-alanine ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 481

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 115/300 (38%), Gaps = 61/300 (20%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYL 170
           ++ +A+ GT GK++  S +  +     L   +I PT      I  F  + RL     +  
Sbjct: 108 KSTIAIAGTHGKTTTTSMIAGL-----LDCGEIDPTVINGGVIEQFGSNARLGDSDWMV- 161

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                           VEA        RLDG   +    TN+  +H+D++      F   
Sbjct: 162 ----------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHY----GDFEGV 198

Query: 231 MRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH- 286
            R F E +   P    AI+  D    + V+ +  +   RV++ G+  +      +CA++ 
Sbjct: 199 KRAFVEFIHNVPFYGAAILCVDHPEVQAVIAKVRDR--RVITYGFSLQ----ADICAVNV 252

Query: 287 ------NKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                 N+  V +   G++     +   P+PG   V NAL A  + + +     ++ E  
Sbjct: 253 KPEAGGNRFDVMVRQRGQEDRRIENVFLPMPGRHNVQNALAAIAVSLEMNCSDEVIREGF 312

Query: 337 EKLHVVPGRFEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIRTI-----TSGRIIVVF 388
            +   V  RF  VGT    GG   V  DYAH    +  +L   R       T  R+I V 
Sbjct: 313 ARFGGVRRRFTRVGTVPVEGGSATVIDDYAHHPVEIRAVLSAARESVDAMDTPARVIAVM 372


>gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           dadantii Ech703]
 gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech703]
          Length = 453

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 133/322 (41%), Gaps = 32/322 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EVS+D+R + AG +FVA+ G   D H +   A+A GA A+VV     ++         
Sbjct: 24  IGEVSTDTRKLTAGCLFVALRGENFDAHDYAADAVAGGAGALVVCKRLPIE--------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVV +TR  L   A+ +  +    ++A+TG+SGK+SV      I ++ G   +  G 
Sbjct: 75  VPQLVVADTRLALGALAAWVRSQSHARVVALTGSSGKTSVKEMTASILRQCGNVLYTAG- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +F  D  +    P+ L   L          + + A+  G   +  + +K      
Sbjct: 134 -----NFNNDIGV----PLTL---LRLAPEHDFAVIELGANHIGEIAYTTELVKPETALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
            N+   H++   +      AK  +F+  LP+    II AD   S ++ +   +   + L 
Sbjct: 182 NNIAAAHLEGFGSLAGVAQAKGEIFDG-LPENGVGIINAD---SNDIARWQPSLAGKTLW 237

Query: 269 ----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                      F+    V A       T+       D   PLPG   + NAL A  L I+
Sbjct: 238 RFSSQPASSADFLA-SDVRAADLGTAFTLHTPVGQVDVTLPLPGRHNIANALAATALAIS 296

Query: 325 IGIDSALVLEHLEKLHVVPGRF 346
           +G     V   L +L  VPGR 
Sbjct: 297 VGASLEAVKLGLSRLQAVPGRL 318


>gi|225619257|ref|YP_002720483.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
 gi|254765984|sp|C0QXF2|MURC_BRAHW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225214076|gb|ACN82810.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
          Length = 462

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 134/332 (40%), Gaps = 37/332 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           Q I     A+V SSA S  +       +  I V+        L   R YG      +A++
Sbjct: 61  QNIEDDVTAVVTSSAISPTNEEIIEAKSKKITVISRGEMLAELMRLR-YG------IAIS 113

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++  S + QI   +GL+     P   I      N     S      A + LSS+ 
Sbjct: 114 GSHGKTTTTSLISQIMMHAGLN-----PVCIIGG----NHFNLKS----NAACNDLSSE- 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             ++  EA        RL  +  +    TN+  DH+DY+   +A   A +    + +P  
Sbjct: 160 --YMVCEADESDGSFLRLSPVINVV---TNIDNDHLDYYGNVEALRVAFLEFINK-VPFY 213

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF- 300
             + +  +D   K++ K A+    +  S G+   +       +I  +  +T      +  
Sbjct: 214 GCSFLCFEDNVVKDLSKSANK---KYYSYGFSKDYDFYVDRDSIRVEAPITYFTAYHNSE 270

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +F  PL G   V N+L + G+ I +GID A + E L+    V  R   +    +   
Sbjct: 271 CLGEFSVPLIGIHNVLNSLASIGVGIHLGIDIADIKEGLKTFEGVGRRLNKL--YDKEIT 328

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
           ++ DYAH    ++  L ++R      RII VF
Sbjct: 329 LFDDYAHHPTEIKATLSSVRNAYKNRRIIAVF 360


>gi|146291592|ref|YP_001182016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           putrefaciens CN-32]
 gi|145563282|gb|ABP74217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           putrefaciens CN-32]
          Length = 439

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 43/268 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++             A    
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMLREAGMA------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           +  P       AL  LS      V +E SS  L+  H L+    +A +  N+  DH+D +
Sbjct: 144 IGVP-------ALDLLSENAEIFV-LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               AY  AK+RL+      +S +II+  DDA +        N+       G +      
Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K     H + ++    E         L G     N L A  L  A+G+D  ++ +     
Sbjct: 248 K---IYHGRSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVDKQVIAKVARTF 297

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +  R E VG   +GG  YV+ +  +N
Sbjct: 298 TGLSHRCEVVGI--KGGVTYVNDSKATN 323


>gi|320106156|ref|YP_004181746.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
 gi|319924677|gb|ADV81752.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
          Length = 454

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 128/334 (38%), Gaps = 46/334 (13%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSAT-IRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           A A+ A+ IV SSA +  +      RS  TPI+   +  + L+      YG      +A+
Sbjct: 61  ANARDADVIVTSSAVAKSNPEVVEARSRKTPII---HRAEMLAELMRLKYG------IAI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
            G  GK++  S V  +    GL  +  +G    +++   + RL             YL +
Sbjct: 112 AGMHGKTTTTSMVASVLAGGGLDPTVVVG--GRVNALGSNARLGNSR---------YLVA 160

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +              D+     +KL  I    TNL R+H+D ++   A        F + 
Sbjct: 161 EA-------------DESDRSFLKLSPILAVVTNLDREHMDAYR-DMADVETAFVEFMDR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P         DD   + ++ R      RV++ G         ++    +       V  
Sbjct: 207 VPFYGATTACIDDPMLRAILPRVRR---RVMTYGESPDADFQLRMLPKDSDCHAVFEVNT 263

Query: 298 KDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           K      F   +PG+  V NA  A  + + +GI  + + E LE    V  RF+  G   R
Sbjct: 264 KGLLLGPFRLHVPGKHNVLNATAAVAIGVELGIAPSQIAEGLEAFRGVDRRFQVKGV-VR 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           G  +  DY H    +   L+  R    GR++V+F
Sbjct: 323 GVTVVDDYGHHPTEVRATLQAARECGYGRVLVLF 356


>gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 455

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 128/293 (43%), Gaps = 26/293 (8%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           SS+    V +E SS  L+  +    K + G   N+  DH++ H T + Y  AKMR+FE  
Sbjct: 156 SSENTIFV-LEISSFQLETIKY--FKPMVGCILNITPDHLNRHMTMENYIKAKMRIFEN- 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + +    ++  D++ +++++  A   G  ++    + +F   K V  I  + ++  + EG
Sbjct: 212 IDETGYTVLNYDNSVTRDLIGLAK--GNVIVFSKNKNQF---KNVVFIE-ENKIYFTFEG 265

Query: 298 KDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           K  + +      +PGE  + NAL A    +  G+    +   L+    V  R EFV T  
Sbjct: 266 KTQEVMRKDEIFIPGEHNLENALAAIACTLPFGVTKDTIEYVLKNFKGVEHRIEFV-TEI 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G + Y D   T+   +   K I    S   I++   G D+ +      G IA  +  + 
Sbjct: 325 NGIKFYNDSKGTNT--DAAEKAISAFESP--IILIAGGYDKGESFERFAGLIAKKVKKVF 380

Query: 414 IVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           ++       +  +KI +E+   G   F    N  EA+  + E     DV++++
Sbjct: 381 LL------GQTKQKIASELEKIGYRNFELVSNLKEAVEKSFEYAKSGDVVLLS 427


>gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 448

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 159/368 (43%), Gaps = 45/368 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++  S +S+++    +F+ + G++ DGH F+ +A+  GA + +    +        +R  
Sbjct: 25  VSSFSLNSKNVSKNTLFIPLKGSRFDGHDFVEEALQNGAISFISQKEFK------NVR-- 76

Query: 90  TPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P + V +T   L   AS +  K     ++ VTG+ GK+S   ++  +       +++  
Sbjct: 77  VPYVKVKDTLVALQDLASYVRDKLKGLTVIGVTGSVGKTSTKEYIFNVL------NYKYK 130

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
                 +F  +N +  P  I     L+      +    +  S+ G +  +L  I K   G
Sbjct: 131 TFKNQGNF--NNHIGLPFSI-----LNMPEDTQIAVFEMGMSNFG-EISKLSQIAKPDIG 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNA 263
             TN+G  HI+  +++   F AK  + ++ +  +   II  D    + +  E+ K     
Sbjct: 183 VITNIGVAHIENLKSRYNIFLAKSEI-QDGMADDGMLIINNDNDILNLHKGELKK----- 236

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R++++G + +     K    H   Q   S E  ++ +         +YN+L A  + I
Sbjct: 237 --RIITIGIENESHFRAKNVQRH---QNGFSFEVDNYTYFIESFNFHDIYNSLFAIAVGI 291

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
            +GID  L+ E + +   +  RFE +    +G    +D  + +++  M L  I +I    
Sbjct: 292 ILGIDRQLIKEAIRRKERLKRRFEII---QKGSITVIDDTYNASTHSM-LSAIDSICEFD 347

Query: 382 GRIIVVFG 389
           G+ I+V G
Sbjct: 348 GKKILVLG 355


>gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus bromii L2-63]
          Length = 450

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++D    +  +  N   +     +  KI  V  DSR ++ G +F+AI G + DGH FI +
Sbjct: 1   MKDFTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFIEK 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             AQGA   +   A           +  P +VV +T   +         K    ++ ++G
Sbjct: 61  CFAQGAVCALCEKAPE--------NATKPCIVVPSTLDAVKKIGRAYREKFDIPVIGISG 112

Query: 123 TSGKSSVASFVQQI 136
           + GK+S    +  +
Sbjct: 113 SVGKTSTKEMLYAV 126


>gi|237751715|ref|ZP_04582195.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
 gi|229373081|gb|EEO23472.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
          Length = 494

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 140/340 (41%), Gaps = 44/340 (12%)

Query: 108 RLYGKHPEN---------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+Y K   N         I+A+TG+ GK+S+ +F+ QI Q+           +T      
Sbjct: 148 RIYAKKAHNKLQQLQNLKIIAITGSYGKTSIKNFIAQILQQQFSVYATPRSVNTYKGLVA 207

Query: 159 D--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
           D    +     IY+A+A       G   V        L QH    I         +G  H
Sbjct: 208 DINQNINATHEIYIAEA-------GARQVGDIKEIAELLQHHYAVIG-------KIGHAH 253

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           I+Y +  +     K  L      + + A +  D++Y+  V+     A  + + V Y  K 
Sbjct: 254 IEYFKNIETTTKTKFELLYS--TRLTHAFVQKDNSYA-NVLPPQFEANMKKI-VAYPPK- 308

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             LK + +   K   ++ ++     F   + G F + N  VA  +   +G+D   + + +
Sbjct: 309 --LKDIESTLEKTSFSLELDSVFVPFTCKILGRFNIDNIAVAIMIAKTLGMDINALQKAV 366

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDR 394
            KL  +P R + + T     ++ +D +   N LE + + IR  ++ +GR I+V     + 
Sbjct: 367 AKLTPIPHRLQRIDT---AQKVIIDDSFNGN-LEGMSEAIRLASLHNGRKIIVTPGLVEH 422

Query: 395 DQGKRPIMGKIALDLADIAIVTDD-NPRSED-----PEKI 428
           D+     + +    + DIAI+T D N +  D     P+KI
Sbjct: 423 DEASNIELAQKIDKVFDIAIITGDLNAKILDTHITTPQKI 462


>gi|148980589|ref|ZP_01816136.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
 gi|145961172|gb|EDK26488.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
          Length = 486

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 46/285 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A M 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAVMC 233

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  EL+P+ S  +I     +S++   R  N     +  G QGKF            
Sbjct: 234 VDDPVVRELIPQVSRQVITY--GFSEDADIRIEN----YVQEGQQGKF------------ 275

Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              T+  EGK + D    +PG     NA  A  +     I    +L+ +        RF+
Sbjct: 276 ---TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFD 332

Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +G    G  + +   DY H    +++ ++  R+     R++++F
Sbjct: 333 HLGEYETGNGVAMLVDDYGHHPTEVDVTIQAARSGWADKRLVMIF 377


>gi|260899193|ref|ZP_05907588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107131|gb|EFO44671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 437

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 123/304 (40%), Gaps = 39/304 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL+   +G    I   A +                 
Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLT---VGVGGNIGVPALE----------------- 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q V    +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F+ 
Sbjct: 150 LLEQDVDLYVLELSSFQLETTL--SLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDH 207

Query: 237 LLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                  A++  DD  +  EV       G    + G +   +   +   + + Q+V  S 
Sbjct: 208 ----AELAVVNRDDQETYPEVEMPVVTFGSDEQAYGLE---VDGSRTWLLDHGQRVIASD 260

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E K       L G+  + NALV   L  A G+D    L  L+    +  R + V  N RG
Sbjct: 261 ELK-------LVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-RG 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAI 414
            +   D   T+ +  M   +    T    ++V G G   D    +PI   + L L    +
Sbjct: 313 VKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGL 372

Query: 415 VTDD 418
             DD
Sbjct: 373 DGDD 376


>gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
 gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
          Length = 478

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 11/119 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ +S DSR +  G +FVA+  +  DGH ++  AI +GA   ++SS             
Sbjct: 24  KVSGISIDSREVAKGDLFVALK-DLRDGHEYVSSAIEKGAAGALISSDCG---------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           + P + VDNT   L         +      A+TG+ GK+SV   + QI +  G + + +
Sbjct: 73  DVPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGKTSVKEMIAQIFRSKGKAHWNV 131


>gi|257068260|ref|YP_003154515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
 gi|256559078|gb|ACU84925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
          Length = 495

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 152/368 (41%), Gaps = 59/368 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +F A +G   DGH F+  A   GA   +V+      D +A    + P + V
Sbjct: 34  DSREVGPGDLFAAFLGEHVDGHDFLDAARTAGAALSLVT------DAAAAAEHSLPAVRV 87

Query: 96  DNTRK----FLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           D+ R           +R   ++P+  +LAVTG++GK+     +  I + +       GPT
Sbjct: 88  DDVRDALAALARAQLARARQENPQLVVLAVTGSAGKTGTKDLLGTILRSA-------GPT 140

Query: 151 -STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            + + SF  +N L  P  +      +      + ++G+ H++       L +     + L
Sbjct: 141 VAPVGSF--NNELGLPLTVLQVTGETRFLVLEMGARGIGHIAE------LTEIARPDVSL 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +     N+G  H+    +  A   AK  L + L P    AI+ A+D   + V   A  + 
Sbjct: 193 V----LNVGSAHLGEFGSVDAIARAKGELVDALAPG-GRAILNAED---RLVAAMAERSA 244

Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--------LPGEFQ 311
             V++ G+     +G  + L +   +    +V   +     D + P        L GE Q
Sbjct: 245 APVVTWGFTTGDVRGAELTLDEQARVAFTLEVPAGLTTLHGDAVAPGSFPVRPDLLGEHQ 304

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG-RFEFVGTNSRGGRIYVDYAHTSN--S 368
             N L A    +  G+DSA     L+   +  G R + +     GG + +D A+ +N  S
Sbjct: 305 AANVLAALTAALMAGVDSASATAALDGATLASGQRMQVL---RAGGALIIDDAYNANPDS 361

Query: 369 LEMILKNI 376
           L   LK +
Sbjct: 362 LRQALKTL 369


>gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
 gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
          Length = 463

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 6/108 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V +DSR I  G +FV ++G + DGH +I  A+  GA A      ++ +D  + +  
Sbjct: 27  EISRVETDSRTIHEGSLFVPLIGEQFDGHAYITSALEGGAAA-----CFTQRDRESYLPG 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
              I  VD+T++ L   A     K    ++AVTG+ GK++    V  +
Sbjct: 82  KCYIR-VDHTQRALRDLAVWYKKKFDIPVVAVTGSVGKTTTKDMVAAV 128


>gi|256821915|ref|YP_003145878.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
 gi|256795454|gb|ACV26110.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
          Length = 489

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 116/285 (40%), Gaps = 45/285 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  S +  I    GL  +F IG    ++S   + RL T S  ++A+A   
Sbjct: 124 VAVAGTHGKTTTTSLIASIFAEGGLDPTFVIG--GLLNSAGSNARLGT-SRFFIAEADES 180

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  V     +  +D +         G F NL  + ID+      Y  A M 
Sbjct: 181 DASFLHIQPMVAVVTNIEADHMDTY--------GGDFKNLENNFIDFLHNLPFYGLAVMC 232

Query: 232 ---RLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              +  +E++P+ + P + Y    +S++       A  R +     G   H K +   ++
Sbjct: 233 IDDKTVQEIMPRVTRPTVTYG---FSED-------ADVRAVDFTQSGTKSHFKVIRRDYD 282

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +           +    LPG   V NAL A  +    G+    + + L +   +  RF+
Sbjct: 283 GE----------LEITLNLPGRHNVQNALAAIAVATEDGVSDQAIQKALSEFGGIGRRFQ 332

Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNI-RTITSGRIIVVF 388
             G     G+      DY H  + +   ++ + R+    R+++V+
Sbjct: 333 MYGDFKVDGKTITLMDDYGHHPSEVMATIEAMRRSWPERRLVMVY 377


>gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
 gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
          Length = 469

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 142/353 (40%), Gaps = 48/353 (13%)

Query: 12  PELINQ-LSIFPMQWRERKINEV----SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           P L+ Q LS   +  ++  + EV    SSD+R +Q G +FVA+ G   D +L++ QA+  
Sbjct: 9   PALLEQTLSATRVDAQDGTLPEVFHSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTA 68

Query: 67  GAEAIVVS--SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  I+ S   A SL           P+ VV +    ++  A           + +TG+S
Sbjct: 69  GASGILCSRPPAQSLP---------IPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSS 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VT 183
           GK++V   +  I      S ++ G    I+    +N +  P        L+ L+     T
Sbjct: 120 GKTTVKEMLGLIVS----SRYRTG----ITRGNLNNHIGLP--------LTLLNCPSDRT 163

Query: 184 HVSVE--ASSHGLDQHRLDGIKLIAGSFTNLGRDHI------DYHQTQQAYFNAKMRLFE 235
           H+ +E   S+ G   H  +  +   G  TN+   H+      +     +   +AK  L +
Sbjct: 164 HLVLEMGMSAPGEIAHLAELAQPQIGIVTNILAAHVAGFGGGNLVSALRGIAHAKGELLQ 223

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVT 292
             LP +  A++ A D +   +       GC +LS G Q      +               
Sbjct: 224 A-LPHDGLAVLPAIDPHLALLQSL---TGCAILSFGPQSSGADVVFTPPSYGDDGMLSTL 279

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           I   G+ F    P  G     NA+ A      +G+D+A + E L +  +  GR
Sbjct: 280 ILPNGERFALNLPGFGPHLWLNAVAACAAAYGLGLDAAAMQEGLSRFKLQKGR 332


>gi|240168216|ref|ZP_04746875.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium kansasii ATCC
           12478]
          Length = 488

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 17/192 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ + +AY        E L P  +  ++  DD  + E+ +R+   G RVL 
Sbjct: 189 TNIESDHLDFYGSTEAYVGVFDSFVERLAPGGA-LVVCTDDPGAAELARRSAELGIRVLR 247

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV-------EGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G             +  +Q+ T +V       E         +PG     NAL A    
Sbjct: 248 YGSAEPEGAPLAATLLSWEQRGTEAVAHLRLAGERHPRVMRLAVPGRHMALNALGALLAA 307

Query: 323 IAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I   +D+A+  VL+ L     V  RFE VG      R++ DYAH    +   L  +R++ 
Sbjct: 308 IE--VDAAIDEVLDGLAGFEGVRRRFELVGAVGS-VRVFDDYAHHPTEIGATLAAVRSVL 364

Query: 381 ----SGRIIVVF 388
               +GR++VVF
Sbjct: 365 QHGGTGRLLVVF 376


>gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 436

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 19/113 (16%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           + +KIN    DSR ++ G  F+ + G   DGH +I  AI +GA         + ++    
Sbjct: 19  KNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKGAVGYFSEKPLNFKN---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQ 134
                 ILV D  +  + +      GKH  N    ++ +TGTSGK+S    + 
Sbjct: 75  -----GILVKDTYQALVEV------GKHKRNQVRVVIGITGTSGKTSTKELMN 116


>gi|94266852|ref|ZP_01290512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93452482|gb|EAT03081.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 37/183 (20%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYG 111
           DGH   P+  A   +AIVVS    L D  A     R+  PI+        L+L  + L+ 
Sbjct: 70  DGH--SPELFA-AVDAIVVSPGVPL-DIPALKEAARAGVPII------GELALAPAYLH- 118

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++AVTGT+GKS+V + + ++ Q +G  +F  G             L  P   YLA
Sbjct: 119 ---TPVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGG------------NLGVPLAQYLA 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    V +E SS  LD       +   G   N+  DH+D +   QAY  +K 
Sbjct: 164 ------GPQEADWVVLEVSSFQLDTA--GAFRPQIGVLLNISPDHLDRYPDYQAYAASKW 215

Query: 232 RLF 234
           RLF
Sbjct: 216 RLF 218


>gi|291460707|ref|ZP_06600097.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416666|gb|EFE90385.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 467

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 153/415 (36%), Gaps = 70/415 (16%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138
           ++A I  + P LV         +  + L G   ++  N + ++GT GK++  S + +I  
Sbjct: 75  YTAAIHPDNPELVAAKKAGLPIISRAGLLGEIMRNYRNAINISGTHGKTTTTSMIAEILL 134

Query: 139 RSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +        PT T+    +D   N     S  ++A+A  Y +S    + ++E       
Sbjct: 135 EADWD-----PTVTVGGMMRDIGGNIRVGQSENFIAEACEYTNSFLSFYPTIEV------ 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAY 252
                          N+  DH+D+ +  +       R F E LP+    +I  D     Y
Sbjct: 184 -------------VLNVEADHLDFFKDLED-IRHSFRRFTEKLPENGLLVINRDIPHYEY 229

Query: 253 SKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FP 305
             E ++      CRVL+ G      Y   FI        +     T+   GK+   +   
Sbjct: 230 FTEGLR------CRVLTYGHDRDADYTANFISYDH----YAHPSYTLFERGKELGPISLG 279

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  +YN+L A  +  A+GI+   +   L +      RF+  G    G  I  DYAH 
Sbjct: 280 VTGEHNIYNSLSAIAVGRALGIELETIRRALHRFQGTDRRFQKKGEVC-GFTIIDDYAHH 338

Query: 366 SNSLEMILKNIRTITSGRIIVVFG------CGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              +   ++  +     ++ V F            D     +     + LADI    + N
Sbjct: 339 PQEIAATIEAAKKYPHRKLWVAFQPHTYSRTAALMDDFAGALSQADEIVLADIYAAREKN 398

Query: 420 PRSEDPEKIRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E +R  +      ++ IP F     RIE     +E L   D+L+  G G
Sbjct: 399 TVGVSSEDLRRHMLEQNTNVYYIPDF----QRIEDF--LMERLQPGDLLITMGAG 447


>gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
 gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
          Length = 469

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + K++ +S D+R +Q G +FVA+   + DGH F+ QA+ +GA A +V+           +
Sbjct: 21  DWKVSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQALDKGAGAALVTHRPD------GV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++ P+L+V++ +  L         +    ++A+TG+ GK+S 
Sbjct: 74  AADAPLLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKTST 116


>gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074270|gb|ADJ63669.1| cyanophycin synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 117/303 (38%), Gaps = 39/303 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AV GT+GK++    +  +  ++GL   ++G T+T   +    R  T        A + 
Sbjct: 472 VVAVAGTNGKTTTVRLITHLLAKTGL---RVGMTNTDGVYIDGQRTDTGDCSGPRSARNV 528

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DYHQTQQAYFNAKMRL 233
           L    V    +E +  G+ +  L   +      TN+G  DH+   Y  T +     K  +
Sbjct: 529 LFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAVVKRVI 588

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---- 289
            E + P  +  +  AD   +K        A C      +     H   + A H  Q    
Sbjct: 589 VENVAPTGTAVLNAADPMVAKMA------ASCPGAVTFFALDPTH--PIMATHRAQGHRI 640

Query: 290 -----QVTISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGID----SAL 331
                   ++ +G  F+    L G          FQV N + + G   A+ +D    +  
Sbjct: 641 VYRDGDAIVAAQGS-FEKRLKLSGIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGA 699

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   +      PGRF     + +G  +  DY H  ++++ ++K + ++ + R  VV    
Sbjct: 700 LASFISDSGTAPGRFNLF--DYKGATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGA 757

Query: 392 GDR 394
           GDR
Sbjct: 758 GDR 760


>gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
 gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
          Length = 779

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 9/182 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL 268
           TN+  DH+D++ T +    A  R F +    +  A++     +  E++++ A    CRV+
Sbjct: 186 TNVEDDHMDHYGTMEKIIEA-FRTFVDQTDADGTAVL----CFENEILRQIACETPCRVV 240

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFD-FLFPLPGEFQVYNALVAAGLCIAIG 326
           S     +  +       H       + E G +    L  +PG   V NAL    +    G
Sbjct: 241 SYAIDAEADYRAADMETHGSVISFTAFERGAEMGRVLLNIPGRHNVLNALACIAVARLAG 300

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ++   +   L + H    RF+  G   RG  +  DYAH    +   L   R    GR+I 
Sbjct: 301 VEFPEIRRALAQFHGAKRRFQTKG-KERGVWVVDDYAHHPTEIAATLAAARQTNPGRLIC 359

Query: 387 VF 388
           VF
Sbjct: 360 VF 361


>gi|166365487|ref|YP_001657760.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
 gi|166087860|dbj|BAG02568.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
          Length = 877

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 131/323 (40%), Gaps = 30/323 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ILA+TGT+GK++ +  +  IC+++G     +G T+T   +  D  +          A   
Sbjct: 490 ILAITGTNGKTTTSRLISHICRQTGKV---VGFTTTDGVYIDDYLVEKGDNTGPYSASMI 546

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235
           L    V    +E +  G+ +  L   +   G   N+  DH+           AK++ +  
Sbjct: 547 LKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVVA 606

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFI--HLKK--VCAIHNKQ 289
           E++  E  A++ ADD  +   +  A     RV   S+      I  H+++  + AI+   
Sbjct: 607 EVVSAEGYAVLNADDPLT---VGMAEKVKGRVAYFSMSPDNPIIHDHIRRGGMAAIYENG 663

Query: 290 QVTISVEGK---DFDFLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            ++I +EG+     +    +P        F + NAL A       GID  L+ + +    
Sbjct: 664 YLSI-LEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFK 722

Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 PGR              +DYAH     E +   +    SG  + V G  GDR  
Sbjct: 723 PSVAQTPGRMNLFDLGHH--HALIDYAHNPAGYEAVGGFVGN-WSGEKVGVVGGPGDRRD 779

Query: 397 GKRPIMGKIALDLADIAIVTDDN 419
               ++GK++  + D  IV +DN
Sbjct: 780 DDLILLGKLSALMFDRIIVKEDN 802


>gi|146329525|ref|YP_001209321.1| folylpolyglutamate synthase [Dichelobacter nodosus VCS1703A]
 gi|146232995|gb|ABQ13973.1| folylpolyglutamate synthase [Dichelobacter nodosus VCS1703A]
          Length = 422

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 156/407 (38%), Gaps = 72/407 (17%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS--SF-----------------QIGPTSTISS 155
           E+I+ V GT+GK S  ++V+ IC   G+S  SF                  +  T   ++
Sbjct: 46  EHIITVAGTNGKGSCVAWVEAICLAHGISVASFTSPHVIDYRERIRFNDHMVRETELCAA 105

Query: 156 FAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGS 208
           F   +R    +T     + A A  YL +Q   H++V     G    RLD + L+   A  
Sbjct: 106 FEAIDRARGTITLTFFEWSALAAFYLMAQRPPHIAVLEVGLG---GRLDAVNLLDADAVI 162

Query: 209 FTNLGRDHIDY---HQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNA 263
           F+ +G DH D+   H  + A   A +   ++   +  E P  + AD       +KR    
Sbjct: 163 FSRIGLDHTDWLGDHIDKIAAEKAGVLRAKQWVAMAAEQPTNVLAD------AVKRMQAQ 216

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----GEFQVYNALVAA 319
            C         +F                  ++   + F  PLP    GE Q+ +   AA
Sbjct: 217 LCPYRVESQNDRF-----------------HIQWAHYHFDLPLPTLLRGEHQLCHC-AAA 258

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +A   D  L  E +++       F  +   +   RI +D AH ++S E IL +  T 
Sbjct: 259 AVILAHWFD--LKPELMQRAVKEAHNFARLMVKNTRPRIVIDVAHNADSAE-ILAHFLTT 315

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PEKIRAEIIHGIP- 437
                  +F CG  RD+    I  ++        +      R  D P      +  GIP 
Sbjct: 316 LDAPERFLFVCGMLRDKDHDAIFKQLQSLAQHWFLGGLTGARGTDAPTLAMHALAAGIPE 375

Query: 438 -GFIEKGNRIEAIRTAIEML---NKQDVLVVAGKGHETVHIVTNGEK 480
                  + I+A R A +     + QD +VV G  H TV  + + EK
Sbjct: 376 NAITTCPDVIQAFRAAQQKAHAQDTQDTIVVMGSFH-TVQQILSAEK 421


>gi|304389582|ref|ZP_07371544.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327135|gb|EFL94371.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 499

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 17/194 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGC 265
           TN+  DH+D H    A F      F   L K    ++ ADDA     +++V  R    G 
Sbjct: 197 TNIEPDHLD-HWGSAAAFEQAFVNFTGRLRKGGALVLCADDAGVKRLAEQVSARGDADGP 255

Query: 266 RVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNA 315
           RV+S G+           +H  ++     + QVTI+  G+          + G+  + NA
Sbjct: 256 RVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLRIGGKHMLLNA 315

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A G    +G D +  +  L        R + VG    G RIY DY H    +   L+ 
Sbjct: 316 GGALGAAYVLGADLSQFIAALRTFSGADRRMQPVGERD-GVRIYDDYGHHPTEIAATLQA 374

Query: 376 IRTITS-GRIIVVF 388
            R +   GR++V F
Sbjct: 375 ARDLAGKGRLLVCF 388


>gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 486

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 141/326 (43%), Gaps = 32/326 (9%)

Query: 20  IFPMQWRE------RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           + P+Q R       R    +S D+R ++   +F AI G+  DGH ++P A A+GA A VV
Sbjct: 22  VTPLQARVSGHVPLRPARGISIDTRTLREDDLFFAIKGDNSDGHDYVPAAFAKGAMAAVV 81

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             A++ +     + ++ P+ VV      L         +    ++AVTG+ GK+S    +
Sbjct: 82  DEAHADR-----LAAHGPLYVVHEVLPALERLGQAARRRVEARVVAVTGSVGKTSTKEAL 136

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +  + G         S  +S A  N      P+ LA+ +   +  G+  + +   +H 
Sbjct: 137 RLVLTQGG---------SVHASVASYNNHWG-VPLTLAR-MPRDARFGIFEIGM---NHP 182

Query: 194 LDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +   L G ++      T +   H++Y +  +A  +AK  +F  L+P    AII+ D   
Sbjct: 183 GEITPLVGMVRPHVAIITTVAPVHLEYFENVEAIADAKAEIFSGLVPG-GVAIIHRDIPQ 241

Query: 253 SKEVMKRA-HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            + + + A H+    + S G   K    L  +    +   V  S++G+   +    PG  
Sbjct: 242 FERLAEAARHSPAGLIASFGTHEKADARLLDLTPSSDHSMVKASIQGETLTYRLGAPGRH 301

Query: 311 QVYNA---LVAAGLCIAIGIDSALVL 333
              N+   L+AA  C     D+A VL
Sbjct: 302 FAENSLAVLLAAKACGVPLEDAAAVL 327


>gi|333027791|ref|ZP_08455855.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
 gi|332747643|gb|EGJ78084.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
          Length = 454

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 114/276 (41%), Gaps = 43/276 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LAVTGT+GK++    +  I + +G  +  +G                
Sbjct: 83  LAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------- 129

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + L  A+  L+ +    ++VE SS+ L  H    ++  + +  NL  DH+D+H +  
Sbjct: 130 ---VSLLDAV--LAEEPYDVLAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMA 182

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL----------SVGY 272
           AY   K R++E        A +Y + D  ++E+++ A    GCR +           +G 
Sbjct: 183 AYAADKGRVYE----GNQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGV 238

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
              ++ + +       QQ     E  D D     P    V NAL AA L  A G+ +  V
Sbjct: 239 VEGYL-VDRAFVPDRAQQAQELAEVADVD----PPAPHNVANALAAAALARAFGVPATAV 293

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            E L      P R E V T    G  YVD +  +N+
Sbjct: 294 REGLRAFRPDPHRIEHVATID--GVSYVDDSKATNT 327


>gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
          Length = 456

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 99/481 (20%), Positives = 186/481 (38%), Gaps = 76/481 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +  +VS+D+R I+ G +F+A+ G + DG+ ++  A  +GA   +                
Sbjct: 25  RCTDVSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGASIALAERPC----------P 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+++VD+    L   A+    +    ++ VTG+ GK+S    +  +  ++  +    G
Sbjct: 75  GWPVVLVDDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEMIFSVLSQAFRTLKNEG 134

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLIA 206
                     +N +  P  ++    L       V  + + A      L Q     I +I 
Sbjct: 135 NL--------NNLIGMPMSVF---GLERQHEAAVFEMGMSAFGEISALSQVAAPDIGVI- 182

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI+   +Q+    AK+ + + + P     I+  DD     ++         
Sbjct: 183 ---TNIGVSHIEMLGSQENILKAKLEILDGMRPG-GKLILNGDDP----LLAGVQTDKAE 234

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALV 317
           V++ G +         CA +  ++V    EG  F   +P         + G+  VYNAL 
Sbjct: 235 VITYGIE------NTGCA-YTAEEVESGAEGTAFCLRYPGGSIAARLQVAGKHNVYNALA 287

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR------GGRIYVD--YAHTSNSL 369
           A  +   +G         +E   +  G  ++  T  R      GG  +V+  Y  + +S+
Sbjct: 288 AFAVGRVLG---------MEPDTIAAGFLQYAPTGYRQKIERVGGVTFVEDCYNASPDSM 338

Query: 370 EMILKNIRTI-TSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
                 +RT+  +GR + V       G       R +  + A +  D+     +N R   
Sbjct: 339 RSAFDVLRTVQKTGRRLAVLADMLELGDTAPDAHRAVGREAAENGVDVLFSYGENARYYQ 398

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV-TNGEKKM 482
               +A    G   F +K    +A+    +ML + D ++  G +G     I+ T GE+  
Sbjct: 399 EGYTQAGGTQGAH-FTDKAALTDAL---CQMLREGDAVLFKGSRGMRLEEIIQTAGERWT 454

Query: 483 S 483
           S
Sbjct: 455 S 455


>gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 454

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 11/111 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +N++  DSR+I  G +F+ + G + DGH FI  A   GA A           FS    S 
Sbjct: 19  LNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVAT----------FSERAISG 67

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            P ++V+N        A     K   +++AVTG++GK+S    ++ +  ++
Sbjct: 68  RPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKA 118


>gi|15889380|ref|NP_355061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           tumefaciens str. C58]
 gi|30316074|sp|Q8UDM6|MURD_AGRT5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15157230|gb|AAK87846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           tumefaciens str. C58]
          Length = 469

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 25/150 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I Q SG  + Q+G     +  + D            KA  + 
Sbjct: 117 IAITGTNGKSTTTALIAHILQSSGRDT-QLGGNIGTAVLSLDP----------PKAQRFY 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      I   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 166 V--------VECSSYQIDLAPT--INPTAGILLNLTPDHLDRHGTMQHYADVK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +     AI+  DD++S  +  R   AG +V
Sbjct: 212 VAGSGTAIVGVDDSHSTLIADRIERAGVKV 241


>gi|253575689|ref|ZP_04853025.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845027|gb|EES73039.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 458

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 25/193 (12%)

Query: 207 GSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           G  TN+  DH+     D+++ ++AY    ++   ++ P +  A++  DD   +E++ R  
Sbjct: 177 GVVTNIEADHLENYGGDFNRLKEAY----VQFLNQIKP-DGKAVVCGDDPNIRELLPRVQ 231

Query: 262 NAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNA 315
           +         +  Y  + I L   C       VT  +   D +       +PG   VYNA
Sbjct: 232 SPTITYGIETNCDYTAREIELGDRC-------VTFKMYQGDRELGTVELSVPGRHNVYNA 284

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           +    +C+  GI    V++ L   H    RF+ +G  + G  I  DYAH    ++  +  
Sbjct: 285 MATVIVCMEAGIPFDEVVKALRHFHGAKRRFQVLGEKN-GILIIDDYAHHPTEIQATIAA 343

Query: 376 IRTITSGRIIVVF 388
            +  T  RII VF
Sbjct: 344 AKA-TGKRIIAVF 355


>gi|94269090|ref|ZP_01291365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93451350|gb|EAT02218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 37/183 (20%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYG 111
           DGH   P+  A   +AIVVS    L D  A     R+  PI+        L+L  + L+ 
Sbjct: 70  DGH--SPELFA-AVDAIVVSPGVPL-DIPALKEAARAGVPII------GELALAPAYLH- 118

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++AVTGT+GKS+V + + ++ Q +G  +F  G             L  P   YLA
Sbjct: 119 ---TPVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGG------------NLGVPLAQYLA 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    V +E SS  LD       +   G   N+  DH+D +   QAY  +K 
Sbjct: 164 ------GPQEADWVVLEVSSFQLDTA--GAFRPQIGVLLNISPDHLDRYPDYQAYAASKW 215

Query: 232 RLF 234
           RLF
Sbjct: 216 RLF 218


>gi|94264633|ref|ZP_01288416.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93454928|gb|EAT05169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 37/183 (20%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYG 111
           DGH   P+  A   +AIVVS    L D  A     R+  PI+        L+L  + L+ 
Sbjct: 70  DGH--SPELFA-AVDAIVVSPGVPL-DIPALKEAARAGVPII------GELALAPAYLH- 118

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++AVTGT+GKS+V + + ++ Q +G  +F  G             L  P   YLA
Sbjct: 119 ---TPVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGG------------NLGVPLAQYLA 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    V +E SS  LD       +   G   N+  DH+D +   QAY  +K 
Sbjct: 164 ------GPQEADWVVLEVSSFQLDTA--GAFRPQIGVLLNISPDHLDRYPDYQAYAASKW 215

Query: 232 RLF 234
           RLF
Sbjct: 216 RLF 218


>gi|326779864|ref|ZP_08239129.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660197|gb|EGE45043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
          Length = 472

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 26/160 (16%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+ P   LAVTGT+GK++    +  I + +GL +  +G                   + L
Sbjct: 109 GRKPAPWLAVTGTNGKTTTVRMLASILRAAGLRTEAVGNIG----------------VSL 152

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A+   +   V  ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K
Sbjct: 153 LDAVVGETEYDV--LAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADK 208

Query: 231 MRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
            R++E      + A +Y  AD A    V +     GCR +
Sbjct: 209 GRVYE----GNTVACVYNVADPATEDLVREADVEEGCRAI 244


>gi|312136106|ref|YP_004003444.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
 gi|311776157|gb|ADQ05644.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
          Length = 455

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 72/365 (19%), Positives = 145/365 (39%), Gaps = 55/365 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G E ++ ++A S +D    + +    L +    +FL L       K  +N++A++GT G
Sbjct: 59  NGDETVIYTAAIS-KDNPELLAAKRMNLKIYERAEFLGLLM-----KDFKNVIAISGTHG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182
           K++  S +  I +++  +     PT  + +F +    N +       + +A  Y+ S   
Sbjct: 113 KTTTTSMIGYILKKANYN-----PTVLVGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLK 167

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + ++                   G   N+  DH+DY +   +  N+  + F + +P   
Sbjct: 168 FNPTI-------------------GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPASG 207

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--------IHNKQQVTIS 294
             I   DD   K+++    N     +S   +         C+         +N  ++   
Sbjct: 208 FLIANCDDKNVKDIISEL-NTQIICISTKEKTDIFADNISCSDGYYEFDVKNNNDKILAH 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         +PG   VYNAL A  +   +G++S  +   + +      R E  G    
Sbjct: 267 IK-------LNIPGFHNVYNALAAFAVASKLGVESITIEHAIAEFCGASRRLEKAG-EFD 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADI 412
           G  +Y DYAH    ++  L  ++ ++ G++  +F          + ++ + A  L LAD 
Sbjct: 319 GICLYDDYAHHPTEIKASLNTLKKLSQGKVFAIF--QPHTFSRLKNLLNEFAESLSLADK 376

Query: 413 AIVTD 417
            I+TD
Sbjct: 377 VIITD 381


>gi|189423741|ref|YP_001950918.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
 gi|226711913|sp|B3E3Y4|MURD_GEOLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189420000|gb|ACD94398.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
          Length = 446

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +  N+  DH+D + + QAY NAK+R+FE     +  A++  DD     V + A +   +
Sbjct: 180 AALLNITEDHLDRYPSYQAYINAKLRIFENQTADDF-AVVNRDDEL---VWQAAQSLKAQ 235

Query: 267 VLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +          +G F    ++   H+ Q+++I   G      F L G   + N + A   
Sbjct: 236 LFPFSRRHELTEGIFSREGELLFRHHGQELSIPTAG------FRLQGVHNLENIMAALAC 289

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           C+ +G      LE L +   +  R EFV
Sbjct: 290 CLLLGCQRETSLELLNRFEALHHRMEFV 317


>gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 462

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E KI  V  DSR +  G +++ I G   +GH ++ QAI  GA A++       +   A  
Sbjct: 27  EEKIQGVCIDSRKVVEGNLYIPIHGANNNGHAYVQQAIDNGARAVL------WERREANP 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                +++VD+T   L   A     +    ++ VTG++GK+S    +  +  +  ++   
Sbjct: 81  PKEIVVILVDDTTAALQQLAKAYRDQLNMKVVGVTGSNGKTSTKDILASVLAKHFITQKT 140

Query: 147 IG 148
           +G
Sbjct: 141 LG 142


>gi|239617755|ref|YP_002941077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506586|gb|ACR80073.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 449

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 154/366 (42%), Gaps = 70/366 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT+GKS+V + V  I ++SGL +F  G             L TP        +S 
Sbjct: 110 IVGITGTNGKSTVTTMVGHIAKKSGLKTFIGG------------NLGTP-------LISS 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE- 235
           ++ +   +V VE SS  L             S  N+ +DH+DYH+  + Y  AK+++ E 
Sbjct: 151 INERFDVYV-VEVSSFQLTWFGKKEKYFHLSSILNIAQDHLDYHRDMREYALAKLKIIEL 209

Query: 236 ---------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                    E+L      ++   D   K+++  +            +  F  LK    I 
Sbjct: 210 TSGSSIINSEILENFGDLLV---DKTKKQIIPFSTR----------KDSFFCLKD--GIM 254

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +++IS++  +F      PG     NA +  GL   +GI     LE L+    +  R 
Sbjct: 255 RLHKLSISLDSLNF------PGIHNQENAAITLGLAQFLGIHVHDALEKLQDYAFLDHRM 308

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  G     G  +++ +  +N+   ++  +      ++I++   G ++ +   P++ KI+
Sbjct: 309 QKCG--QINGVTFINDSKATNA-HAVINALENFDLEKVIIIL-SGKEKREDYTPLIKKIS 364

Query: 407 LDLADIAIVTDDNPRS--EDPEK--IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                  I   D+ +S  E  +K  I  +++H I          EA++ A+E+    D++
Sbjct: 365 --RVKHIIFLGDSLKSLIERLKKKGITYDVVHTID---------EALKKAVELSKAGDIV 413

Query: 463 VVAGKG 468
           + +  G
Sbjct: 414 LFSPGG 419


>gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 452

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI+ +S++S  I    +FV I+G + D H+FIP A+ +G   +      +          
Sbjct: 25  KIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGGACLTQEHTEA--------SG 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           N P + V +T   +   A+    K    I+ VTG+ GK++    +  + +
Sbjct: 77  NAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREMIAHVLK 126


>gi|302669659|ref|YP_003829619.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
 gi|302394132|gb|ADL33037.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
          Length = 464

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 126/333 (37%), Gaps = 38/333 (11%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVT 121
            Q AE I  +    +  ++A +  + P  +         L  ++L G   K  +  +AV 
Sbjct: 60  GQKAENIRNAGDIDVVVYTAAVHPDNPEFMAAKEANLPMLTRAQLLGQIMKQYKLPVAVA 119

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLS 178
           GT GK++  S + +I   +        PT +I    +D   N     S  ++ +A  Y +
Sbjct: 120 GTHGKTTTTSMLSKILLEA-----DTDPTLSIGGIFKDIGGNIRVGQSEYFVTEACEYTN 174

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S     +S               I +I    +N+  DH+D+ +          R F +LL
Sbjct: 175 S----FLSF-----------FPKISII----SNIDADHLDFFKDLDD-IRHSFRKFAQLL 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-- 296
           P +   +I  D    +E+     +  C +++ G +  F +       + +   + +    
Sbjct: 215 PADGTLVINGDIDNVEEITD---SLPCTIITYGSRDSFDYYPTDITYNEQGNPSFTAHLP 271

Query: 297 -GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+  D    +PG   VYNAL +  +    GI    ++  L        RFE+ G    G
Sbjct: 272 GGETLDISLAVPGIHNVYNALASIAVANLFGISKDNIVAALSAFGGTSRRFEYKG-EIGG 330

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             I  DYAH    ++  L   +     +I  VF
Sbjct: 331 VTIIDDYAHHPTEIKATLTAAQNYPHNKIWCVF 363


>gi|261405378|ref|YP_003241619.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261281841|gb|ACX63812.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 458

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 130/329 (39%), Gaps = 43/329 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ +V S+A S  +          I V+   +    L   R         +AV G  G
Sbjct: 62  QGADLVVYSTALSKDNVERVEAEKLNIPVLHRAQMLARLLNER-------KGVAVAGAHG 114

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +S +  + +  G+  +F IG    I +   + +                + +G  H
Sbjct: 115 KTTTSSMIALVMEECGVDPTFIIG--GEIMNVGTNAK----------------AGEG-EH 155

Query: 185 VSVEA-SSHG--LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  EA  S G  L  H   G+ L      N+  DH++ ++       A    F   +  +
Sbjct: 156 VVAEADESDGSFLQYHPWLGVVL------NIEADHLENYEGDFNRLKAAYVQFLSQIKAD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF 300
             A++ ADD   + ++    +  C V + G      +      + ++    T+   G + 
Sbjct: 210 GTAVVCADDNNIQAILP---DLKCNVTTYGIHADAEYTATNLVLGDRHVSFTMLHNGMEL 266

Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   +PG+  VYNA+     C+  GI    ++E + K +    RF+ +G  + G  + 
Sbjct: 267 GTVELSVPGKHNVYNAMATVICCLKSGISFGAIVEAIVKFNGAKRRFQVLG-EAEGILVI 325

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            DYAH    +E  +   +  T  RII VF
Sbjct: 326 DDYAHHPTEIEATISAAKA-TGKRIIAVF 353


>gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
 gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
          Length = 480

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 35/247 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           +S DSR      +FV ++G K+DGH FI  A+ QGA A+  S      +         P 
Sbjct: 33  ISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAAAKRWPG 92

Query: 92  --ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF---- 145
              + VD+TR+ L    + +  +    ++ +TG+ GK++    V      +G   F    
Sbjct: 93  AAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALS-AGFHVFKTPA 151

Query: 146 ----QIGPTSTISSFAQDNR-------LTTPSPIYL-----AKALSYLSSQGVTHVSVEA 189
               Q+G   T+S  +  +        ++ P  + +     A  ++ +++ GVTH+    
Sbjct: 152 NHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNVGVTHIENLG 211

Query: 190 SSHGLDQHRL---DGIKLIAGSFTNLGRDHIDYHQTQQA----YF----NAKMRLFEELL 238
           +   + + +L   DG++     F N   D +   + ++     YF    NA  R  +  L
Sbjct: 212 TRENILREKLKIQDGMRADGPVFLNGDNDLLGISRAREGHKTVYFGTGENADYRAVDIRL 271

Query: 239 PKESPAI 245
            +  P+ 
Sbjct: 272 ERGCPSF 278


>gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 436

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 26/147 (17%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KIN    DSR ++ G  F+ + G   DGH +I  AI +GA         + ++      
Sbjct: 21  KKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKGAVGYFSEKPLNFKN------ 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQR---- 139
               ILV D  +  + +      GKH  N    ++ +TGTSGK+S    +  +       
Sbjct: 75  ---GILVKDTYQALVEV------GKHKRNQVKAVIGITGTSGKTSTKELMNFVLSNLAST 125

Query: 140 ---SGLSSFQIGPTSTISSFAQDNRLT 163
               G  + +IG   T+++  ++  LT
Sbjct: 126 YATQGNYNNEIGVPLTLANIPENIDLT 152


>gi|160932699|ref|ZP_02080088.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
 gi|156867773|gb|EDO61145.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
          Length = 473

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 128/320 (40%), Gaps = 59/320 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTS 124
           AEA+V         ++A ++ + P L     +   +L  S + G   +   + +AV+GT 
Sbjct: 80  AEAVV---------YTAAVKQDNPELAAAREKGIPTLERSVMLGIVCRRYADAVAVSGTH 130

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSS-- 179
           GK++  + + QI  +SG       PT+ I     F   N     S I + +A  Y+ +  
Sbjct: 131 GKTTTTAMLTQILVQSGKD-----PTAIIGGKLPFLGGNSRVGSSEIMVCEACEYVDTFL 185

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-L 238
           Q    VS+                       N+  DH+DY +      N  ++ F +  L
Sbjct: 186 QLTPAVSI---------------------ILNIDADHLDYFKD----LNNIIKSFHQFAL 220

Query: 239 PKESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                 ++  DDA +++ +      A   G +  +  Y G     K VC     ++ ++ 
Sbjct: 221 QTTKRLVVNGDDANTQKAIAGVSLPAVTFGMKDTNDYYAGSIAEKKGVC-----EEFSLM 275

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+   + +  +PGE  +YNAL AA     +G+    + + L     V  RFE +G N 
Sbjct: 276 YRGEKLAEIVLSVPGEHNIYNALAAAAAAHTLGVSPEDIAKSLHAFTGVHRRFEVLG-NP 334

Query: 354 RGGRIYVDYAHTSNSLEMIL 373
            G  +  D+AH    L   L
Sbjct: 335 SGIMVADDFAHHPTELSATL 354


>gi|311693453|gb|ADP96326.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [marine bacterium
           HP15]
          Length = 446

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 26/142 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GK++V + V ++ + +G             + A    + TP       AL  
Sbjct: 111 IVAITGSNGKTTVTTLVGEMAKAAG------------RNVAVGGNIGTP-------ALDL 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  QG     +E SS  L+    D +  +A +  NL  DH+D +  + AYF AK R+F  
Sbjct: 152 LG-QGADLYVLELSSFQLETT--DELNALAATVLNLSDDHMDRYPNKMAYFQAKQRIFRG 208

Query: 237 LLPKESPAIIYADDAYSKEVMK 258
                  AI+  DDA S  + +
Sbjct: 209 C----KNAIVNLDDALSTPMAR 226


>gi|260187151|ref|ZP_05764625.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447780|ref|ZP_06437524.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289420738|gb|EFD17939.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
          Length = 494

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 33/204 (16%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +AY  A    F E +      ++  DD     + +RA   G RVL
Sbjct: 188 ITNIESDHLDFYGSVEAYV-AVFDSFVERIVSGGALVVCTDDPGGAALAQRATELGIRVL 246

Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             G             +Q    G   H++    +   Q   +            +PG   
Sbjct: 247 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 298

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             NAL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    
Sbjct: 299 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 358

Query: 369 LEMILKNIRTI----TSGRIIVVF 388
           +   L   R +      GR +VVF
Sbjct: 359 ISATLAAARMVLEQGDGGRCMVVF 382


>gi|65319483|ref|ZP_00392442.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 252

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA
Sbjct: 13  KKFEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA 70

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +   +Y       +     PI+ VD+T   L   A     +    ++ +TG++GK++
Sbjct: 71  IASLWKKSY------GSPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTT 124

Query: 129 VASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRL 162
           V   V+ I + +       G  + QIG   TI    +D  +
Sbjct: 125 VKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEI 165


>gi|310830391|ref|YP_003965492.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309249858|gb|ADO59424.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 459

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 143/342 (41%), Gaps = 52/342 (15%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ IA GA+ +V S+A S  +          I  +  ++    L   R       
Sbjct: 55  GH--TPEHIA-GADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLARLLNER------- 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKA 173
             +AV G  GK++ +S +  + +R  +    I  G  + + + A+  +            
Sbjct: 105 KGIAVAGAHGKTTTSSMIALVMERCNVDPTYIIGGEITNLGTNAKAGK------------ 152

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFN 228
                S+ V   + E+    L  H   GI       TN+  DH+     D+++ + AY  
Sbjct: 153 -----SEFVVAEADESDGSFLQYHPWQGI------VTNIEADHLENYDGDFNRLKSAY-- 199

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             ++   ++ P +  AI+ ADD   +E++ +      RV++ G + +  ++     + ++
Sbjct: 200 --VQFLGQIQP-DGAAIVCADDQNIQEMLPQLQ---TRVITYGIEHEADYMATDIQLGDR 253

Query: 289 Q-QVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   T++ +G     +   +PG+  VYNA+     C+  GI    +   + + H    RF
Sbjct: 254 RLSFTMNRKGTALGTIELSVPGKHNVYNAMATVISCLEAGIPFEQIAATIVEFHGAKRRF 313

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           + +G +     +  DYAH    +   L+  ++ T  RI+ VF
Sbjct: 314 QVIG-DLHDVLVVDDYAHHPTEIIATLQAAKS-TGKRIVAVF 353


>gi|87199153|ref|YP_496410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|118595671|sp|Q2G997|MURD_NOVAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|87134834|gb|ABD25576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 443

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 137/338 (40%), Gaps = 62/338 (18%)

Query: 42  AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTPI---LVVDN 97
           AG   V +  N+E+     P++  +G+  I    +  L  F+  + S   P+    + D+
Sbjct: 30  AGGADVTVWDNREE-----PRSAFEGSCTIADPLSIDLTGFAGVVVSPGVPLNRHPIADH 84

Query: 98  TRKF-------LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            R         + LFA       P  ++ +TGT+GKS+    V  IC  +GL + ++G  
Sbjct: 85  ARAAGVPVIGDIELFAQARADLPPHRVVGITGTNGKSTTTMLVHHICAAAGLPA-RLGGN 143

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +    Q+     P P            +G  +V +E SS+ +D  +   +     +  
Sbjct: 144 IGLPILGQE-----PLP------------EGGVYV-LELSSYQIDLTQ--SLACDVAALI 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL  DH+D +     Y  +K RLF  +   +  A+    D ++ E+ + A        S 
Sbjct: 184 NLSPDHLDRYDGFAGYAASKARLF-AMQRADQHAVFGCGDEHTLEIAREA--------SA 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDS 329
            +   F+H+ +  A+H + +             +P L G   + NA +A  +   +GI  
Sbjct: 235 THDTGFVHVVQPSALHGQLE-------------WPSLQGPHNLQNAAIAVEIARQLGIAE 281

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +    L     +P R E V   +  G ++V+ +  +N
Sbjct: 282 DIWRSALASFVGLPHRMERVAEAN--GVLFVNDSKATN 317


>gi|145641280|ref|ZP_01796860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R3021]
 gi|145274117|gb|EDK13983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 22.4-21]
          Length = 399

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 112/287 (39%), Gaps = 30/287 (10%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           ++QGA A+VV      Q+ S+ +    P LVV +TR  L   A  L  K     +A+TG+
Sbjct: 1   MSQGALALVVQ-----QENSSIL---VPQLVVKDTRIALGELAKWLREKINPRTVAMTGS 52

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++V      I Q +   S  +  T+   +F  D       P+ L   L         
Sbjct: 53  SGKTTVKEMTASILQHTAADSEAVLFTN--GNFNND----IGVPLTL---LRLTEKHRFA 103

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A+      +    ++  A    N+   H++   +      AK  ++  L  K   
Sbjct: 104 VIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGL-TKNGV 162

Query: 244 AIIYAD----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           AII A+    D + KE+   A           + GK   +K V         T+     +
Sbjct: 163 AIINAEHNHLDIWQKEISNHAIQY--------FNGKDYSVKNVQGNEQGSTFTLVSPQGE 214

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            D   P  GE  V NAL A  L + +G   A V   LE+   V GR 
Sbjct: 215 IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRL 261


>gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SSC/2]
          Length = 452

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI+ +S++S  I    +FV I+G + D H+FIP A+ +G   +      +          
Sbjct: 25  KIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGGACLTQEHTEA--------SG 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           N P + V +T   +   A+    K    I+ VTG+ GK++    +  + +
Sbjct: 77  NAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREMIAHVLK 126


>gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
 gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
          Length = 467

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 152/378 (40%), Gaps = 46/378 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+ +  V +DSR  Q+  +FV +VG + DGH ++ Q +++ + A     A+  Q      
Sbjct: 23  EQMVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVSEASAA-----AFLWQKNHGAP 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQR 139
            S   I V D       L A+ L  +   +++ +TG++GK++    V        ++ + 
Sbjct: 78  PSENAIEVEDTLEALQHLAAAYLR-ETGVSVVGITGSNGKTTTKDIVNALLGTTFKVHKT 136

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G  +  IG   T+ S  QD  +     + L   +S     G   + + A+    D    
Sbjct: 137 EGNYNNHIGLPLTVLSMPQDTDI-----LILEMGMS-----GRGEIRLLANIAQPD---- 182

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMK 258
             + +I    TN+G  H+    ++     AK+ +   L P     +IY  D+    +V+ 
Sbjct: 183 --VAII----TNIGESHLLQLGSRAEIARAKLEITSGLKP--GGLLIYNGDEPLLSQVLA 234

Query: 259 RAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +      G ++ + G                +  + I+ +     F  PL G+  V N 
Sbjct: 235 ESETVKPEGLKLFTFGLATGNDDYPTEITSDGEGSLFITAQSGKEAFRLPLLGQHNVVNG 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +     +D+  + + L  L +   R E V  N   G   ++ A+ ++   M    
Sbjct: 295 LAALAVARHFNVDADHIRKGLSSLKLTGMRIEVV--NCPNGLTVLNDAYNASPASMKAA- 351

Query: 376 IRTI----TSGRIIVVFG 389
           I+T+    T GR + V G
Sbjct: 352 IQTLSAYKTDGRKVAVLG 369


>gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
 gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
          Length = 487

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 146/387 (37%), Gaps = 56/387 (14%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   S D+R ++ G +F AI G   DGH F+  A+ +      V +    ++F     
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAAL-EKGAGAAVVAEARAKEFEGA-- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              P+L V    +   L A R  G     +    I+AVTG+ GK+     ++ +    G 
Sbjct: 82  --GPVLAVPGEGEDPVLDAMRRLGLAARARTGAAIIAVTGSVGKTGTKEALRHVLSAQGA 139

Query: 143 SSFQI-------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +       G   T++   +D R                   GV  + +   +HG +
Sbjct: 140 THASVASYNNHWGVPLTLTRMPEDTRF------------------GVFEIGM---NHGAE 178

Query: 196 QHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              L   ++      T +   HI++ ++  A  +AK  +F  L P    A+I  D+   +
Sbjct: 179 ILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPG-GVAVINRDNPNYE 237

Query: 255 EVMKRAHNA-GCRVLSVGYQGKFIHLKKVCA--IHNKQQVTI---SVEGKDFDFLFPLPG 308
            ++  A  +   RV++ G          VCA  I  +  V++   +V G    +    PG
Sbjct: 238 RLLAHAQASRAGRVITFGEH----EAADVCAHRILTRPDVSVVDATVMGIPVTYQLGTPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSN 367
                N+L       A+G D A     L  L    GR E        G  + VD ++ +N
Sbjct: 294 RHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNAN 353

Query: 368 SLEM-----ILKNIRTITSGRIIVVFG 389
              +      L  I T   GR I V G
Sbjct: 354 PASIRAALATLAGIDTGAKGRRIAVLG 380


>gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
 gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
          Length = 450

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 160/381 (41%), Gaps = 54/381 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + V SDSR+I AG +FVA+ G   DG+ F  +A+  GA A++VS A S+Q        
Sbjct: 21  QFSSVGSDSRNIVAGQLFVALKGANFDGNAFAQEALELGAAAVLVSDA-SVQA------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P +VV +TR  L   A     K    ++AVTG++GK++    +  I     LS     
Sbjct: 73  -EPRIVVADTRLALGELAKYWRQKFAMPVVAVTGSNGKTTTKEMLSAI-----LSVVAGA 126

Query: 149 PTSTISSFAQ-DNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             S  +++   +N +  P + + +  A  Y +   G+ H+             +D +  I
Sbjct: 127 KASVHATYGNLNNDIGVPLTLLKMQPAHQYAVVEMGMNHLG-----------EIDYLTHI 175

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           A        N G  HI    +++    AK  +F  L   +  A+I AD  Y+     ++ 
Sbjct: 176 AQPDVALINNAGIAHIGELGSRENIAKAKGEIFAGL-KSDGVAVINADSDYA--YYWKSL 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-------VTISVEGKDFDFLFPLPGEFQVYN 314
           N   ++++ G       LK    +  + Q       V ++    +      + GE  + N
Sbjct: 233 NPHRKIVTFG-------LKNPADVSARYQENDGYASVVLATASDEVSVQLNVQGEHNISN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEMIL 373
           AL A     A+G+    +   L     V GR E   G N   G + +D  + +N   M  
Sbjct: 286 ALAAGATAYALGVSLNDIGRGLASFTGVYGRLERKAGIN---GAVVIDDTYNANPDSMKA 342

Query: 374 K-NIRTITSGRIIVVFGCGGD 393
             N+    +G+ I+V G  G+
Sbjct: 343 AINVLAKLAGKKILVLGDMGE 363


>gi|257063610|ref|YP_003143282.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791263|gb|ACV21933.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
          Length = 464

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 105/279 (37%), Gaps = 27/279 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKEVMKRAH 261
           TN+  DH+D++             F   +P E   +++ DD        A +K V     
Sbjct: 180 TNVEPDHLDHYTGGIDEIRDTFAKFMSSVPDEGACVVFGDDPELVRIARASAKRVYTYGL 239

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G  ++  GY  K I      ++ +   VT +++          PG     NA    G+
Sbjct: 240 GEGNDIVVSGYSTKGISSTFDLSMPDGSNVTCTLKKN--------PGLHNALNAAGILGV 291

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             A+G+D A   E +     V  RF+ VG  + G  +  DYAH    ++  L     +  
Sbjct: 292 VFALGLDVAAAAEGIADYTGVRRRFDLVG-EAAGVTVVDDYAHHPTEIKATLSAAAGLDF 350

Query: 382 GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII------ 433
            R+  +F      R        GK   D AD+  + D  P  E P E +  ++I      
Sbjct: 351 KRVFALFQPHRYSRTASLTDEFGKAFAD-ADVLRIMDVYPAGEAPIEGVSGKLIADAVEA 409

Query: 434 HGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            G P  +    ++ EA    +E L   D+L   G G  T
Sbjct: 410 FGAPTDVAYLPDKDEAAARVLEELQPGDILFTMGAGDVT 448


>gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
 gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
          Length = 459

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 133/290 (45%), Gaps = 28/290 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I+   IF+A+ G + +G+ +   A  +GA   +V   +  ++    I+  T +
Sbjct: 29  ISTDTRKIEEKAIFIALKGERFNGNEYTASASQKGAFICIVDEVHFKKE---EIKDYTTV 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A     K    ++A+TG++GK+S       +      + +++  T  
Sbjct: 86  IKVKDTSEALLDLAKYYKSKLEVKVVAITGSTGKTSTKDLTASVLG----AKYKVFKTE- 140

Query: 153 ISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +F  +N +  P  I+ L K     +   G+++       H + +  L  I +I    T
Sbjct: 141 -GNF--NNEIGLPLMIFKLDKTYDIAVLEMGMSNF---GEIHKMAKTALPDIAII----T 190

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+  +++     AK+ +  +   +++  I+  +D    +++        +++  
Sbjct: 191 NIGISHIENLKSRDNILKAKLEII-DFFGEDNILIVNGED----DLLGNLKEEKYKLIKT 245

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVA 318
           G  GK  ++       N++ V+  +  +G +     P+PG+  V N+L+A
Sbjct: 246 GL-GKNHNIYAYDINLNEKSVSFKIFEDGDELQIDIPVPGKHNVLNSLLA 294


>gi|298293097|ref|YP_003695036.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506]
 gi|296929608|gb|ADH90417.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506]
          Length = 469

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 148/400 (37%), Gaps = 65/400 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA  +VVSSA         IR + P LV    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GAAVLVVSSA---------IRRDNPELVAARAKRLPVVRRAEMLAELMRLKSCVAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +    G     I     I+++  + RL                  G   
Sbjct: 117 GKTTTTSLVATLLDAGGFDPTVIN-GGIINAYGTNARL----------------GDGEWM 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V     S G        + +     TN+  +H+D+ +T  A   A  R F + LP    A
Sbjct: 160 VVEADESDGT----FLKLPVEVAIVTNIDPEHLDHFKTFDA-VQAAFRSFIDNLPFYGFA 214

Query: 245 IIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           ++  D    ++++ R  +           A  R++ +  +G       +    N      
Sbjct: 215 VMCTDHPVVQDLVGRVEDRRVITYGENPQADVRLVDLDLRGGVCRFNVLFRGRNGD---- 270

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            V  +  D + P+PG     NA  A  +   +G     +   L     V  RF   G   
Sbjct: 271 -VRHELRDLVLPMPGRHNALNATAAIAVAHELGASDEQIRSALAGFGGVKRRFTRTG-EV 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
            G  I+ DY H    +  +L+  R  T G++I V      R    + +  + A   + AD
Sbjct: 329 NGVTIFDDYGHHPVEIAAVLRAARASTEGQVIAV--VQPHRYTRLQSLFDQFATCFNDAD 386

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
             IV D  P  E P          IPG I++ + +EA+R 
Sbjct: 387 HVIVADVYPAGEAP----------IPG-IDRDHLVEALRA 415


>gi|218886057|ref|YP_002435378.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757011|gb|ACL07910.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 455

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 31/258 (12%)

Query: 190 SSHGLDQHRLDGIKLIA------GSF----------TNLGRDHIDYHQTQQAYFNAKMRL 233
           +++G +    DG  LIA      GSF          TN+  DH+D++ +QQA  +A +  
Sbjct: 144 NAYGANARLGDGAYLIAEADESDGSFLCLFPIVTVVTNVDMDHMDHYPSQQAIDDAFVD- 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   +P     ++  DD   + ++ R       V++ G+ +G  I   +V A  +     
Sbjct: 203 FMNKVPFYGMNVVCGDDPGVRRLLPRVKRP---VVTYGFGEGNAIR-AEVLACADSSLFN 258

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + V G D        PG   + NAL A G+ +   I    ++  L K   V  RFE  G 
Sbjct: 259 VIVNGDDIGQVRLAQPGRHNILNALAAIGVALECDIAPEKIVAGLAKFGGVGRRFERKG- 317

Query: 352 NSRGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIA--L 407
             R G + V DY H    +   L   R      R++VVF     R    + + G+     
Sbjct: 318 -ERDGVLVVDDYGHHPAEIAATLATARQCFPHRRLVVVFQP--HRFSRTQALFGEFCKVF 374

Query: 408 DLADIAIVTDDNPRSEDP 425
           D  D  ++T+  P SE P
Sbjct: 375 DGVDKLLLTEIYPASEKP 392


>gi|62900655|sp|Q5E2P8|MURD_VIBF1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 440

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 151/356 (42%), Gaps = 62/356 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V     ++ + +G+ +   G       FA  + L   + +Y+ +  S+
Sbjct: 110 VIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG----FAALDLLEQDAELYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E +S          +KL A +F NL  DH+D +Q    Y  AK+R+FE 
Sbjct: 166 ---------QLETTST---------LKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEH 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                   I+  DD  +   +++       + S G+ QG +  ++K   I    + T+ +
Sbjct: 208 ----AEVCIVNRDDKQTYPDVEKT------LKSFGFDQGDYGCIEKD-GIEYLAKNTVPL 256

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G+  + N+LVA  L  A GI+    L+ L   + +  R + V  N+  
Sbjct: 257 LAANE---LGLVGKHNIANSLVAIALLDAAGINLDATLDTLRTYNGLTHRCQVVADNN-- 311

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G  +V+ +  +N    +         G++ ++ G       GK     +++  L D+ ++
Sbjct: 312 GIRWVNDSKATNVASTLAALSGLQLEGKLHLLVG-----GVGKGADFSELSPALHDLNLM 366

Query: 416 T------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   D   S DP  +  E ++            EAI T    LNK D+++++
Sbjct: 367 MYCFGEDGDQFVSLDPRSLLCETMN------------EAIATLYPTLNKGDMVMLS 410


>gi|320335715|ref|YP_004172426.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
 gi|319757004|gb|ADV68761.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
          Length = 919

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 153/396 (38%), Gaps = 52/396 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+ +  V  I + +G     +G T++   +     +          A   
Sbjct: 514 VIAITGTNGKSTTSRMVAHILKHAGKV---VGLTTSNGIYVDGELIMGGDTTGPKSAKVI 570

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235
           LS   V    +E +  G+ +  L   +   G+  N+  DH+     +     A ++ L  
Sbjct: 571 LSDPNVEVAVLETARGGILREGLGFDRADVGAVLNIQPDHLGMKGIETVEDLAYVKSLVV 630

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQV-- 291
           E++     +++ ADD  +  + ++A          G    F  ++    C+ H ++ +  
Sbjct: 631 EVVTDTGTSVLNADDPLTVNMQRKA----------GGSITFFSMQDSNACSEHLQRHIDE 680

Query: 292 -------TISVEGKDFDFL-----FP------LPGEFQVY------NALVAAGLCIAIGI 327
                    ++ G +         +P      +P     Y      NAL A G+ +  G+
Sbjct: 681 GGTAVVREATLLGDELVLYRAGHRYPVIRAREIPATLGGYARVNIANALAAIGVAVGAGV 740

Query: 328 DSALVLEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TS 381
           +  ++   L          PGR           R+ +DYAH  + L  + + +  +    
Sbjct: 741 ELPVIRAALGSFSTSFEQSPGRLNLY--EGHPFRVLLDYAHNPDGLRPLAELVPFLRPAK 798

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR+I VFG  GDR       MG I   + D+ I+ +D  R        AE+     G + 
Sbjct: 799 GRVIGVFGVAGDRRDVDIREMGAILAGMFDLLILREDTDRRGRAPGEGAELTR--EGALA 856

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            G   E I+  +   +  D  + AG+  + V I+ N
Sbjct: 857 AGMNPEQIQVILHEPDAIDAALRAGQAGDLVVILPN 892


>gi|149202237|ref|ZP_01879210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
 gi|149144335|gb|EDM32366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
          Length = 469

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 116/290 (40%), Gaps = 62/290 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+ ++ +  +   +G ++   G             L    P         
Sbjct: 122 VIAVTGSNGKSTTSALIHHVLTEAGRAAQLAGNIGR-------GVLDIDPP--------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               GV  V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 166 -EDSGV--VVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADDAYSK------------------EVMKRAHNAGCRVLS-VGYQGKFI 277
             P    A+I  D+A  +                   V ++    G  V +  G+  ++ 
Sbjct: 221 GGPDR--AVIGVDEAEGRYLAGQMAEGPNDDRVIRISVDRKLSGFGWSVFARKGFLSEYR 278

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           H ++V +I  ++     V+G        LPG     NA  A   C  +G+   ++     
Sbjct: 279 HGRQVGSIDLRE-----VKG--------LPGSHNHQNACAAYAACRTLGLAPRVIEAGFH 325

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN---SLEMIL--KNIRTITSG 382
               +P R + V    + G I+V+ +  +N   +L+ +L   NIR I  G
Sbjct: 326 SYAGLPHRSQRVA--EKDGVIFVNDSKATNVDSALKALLAFDNIRWICGG 373


>gi|238797708|ref|ZP_04641203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
 gi|238718460|gb|EEQ10281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
          Length = 438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 105/248 (42%), Gaps = 52/248 (20%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-----SSFAQDNRLTTPS 166
           ++P  I+A+TG++GKS+V + V ++ + +G   +Q+G    I     +   Q+N+L    
Sbjct: 102 ENPAPIVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGVPALTLLKQENQLVV-- 156

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQA 225
                  L   S Q  T  S+ AS               A +  N+  DH D Y    Q 
Sbjct: 157 -------LELSSFQLETTTSLRAS---------------AATILNVTEDHTDRYPFGLQQ 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y  AK+R++E         ++ ADDA +  V      A  R +S G      HL      
Sbjct: 195 YRAAKLRVYE----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL------ 240

Query: 286 HNKQQ--VTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            NKQQ  + + V+G+         L G     NAL A  L  A+GI  +  L+ L     
Sbjct: 241 -NKQQGEIWLRVQGEKVLNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTG 299

Query: 342 VPGRFEFV 349
           +P RF+ V
Sbjct: 300 LPHRFQLV 307


>gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Clostridium cf. saccharolyticum K10]
          Length = 476

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 35/247 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           +S DSR      +FV ++G K+DGH FI  A+ QGA A+  S      +         P 
Sbjct: 29  ISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAAAKRWPG 88

Query: 92  --ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF---- 145
              + VD+TR+ L    + +  +    ++ +TG+ GK++    V      +G   F    
Sbjct: 89  AAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALS-AGFHVFKTPA 147

Query: 146 ----QIGPTSTISSFAQDNR-------LTTPSPIYL-----AKALSYLSSQGVTHVSVEA 189
               Q+G   T+S  +  +        ++ P  + +     A  ++ +++ GVTH+    
Sbjct: 148 NHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNVGVTHIENLG 207

Query: 190 SSHGLDQHRL---DGIKLIAGSFTNLGRDHIDYHQTQQA----YF----NAKMRLFEELL 238
           +   + + +L   DG++     F N   D +   + ++     YF    NA  R  +  L
Sbjct: 208 TRENILREKLKIQDGMRADGPVFLNGDNDLLGISRAREGHKTVYFGTGENADYRAVDIRL 267

Query: 239 PKESPAI 245
            +  P+ 
Sbjct: 268 ERGCPSF 274


>gi|302518529|ref|ZP_07270871.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
 gi|302427424|gb|EFK99239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
          Length = 474

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 114/276 (41%), Gaps = 43/276 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LAVTGT+GK++    +  I + +G  +  +G                
Sbjct: 103 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------- 149

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + L  A+  L+ +    ++VE SS+ L  H    ++  + +  NL  DH+D+H +  
Sbjct: 150 ---VSLLDAV--LAEEPYDVLAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMA 202

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVLS----------VGY 272
           AY   K R++E        A +Y + D  ++E+++ A    GCR +           +G 
Sbjct: 203 AYAADKGRVYE----GNQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGV 258

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
              ++ + +       QQ     E  D D     P    + NAL AA L  A G+ +  V
Sbjct: 259 VEGYL-VDRAFVPDRAQQAQELAEVADVD----PPAPHNIANALAAAALARAFGVPATAV 313

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            E L      P R E V T    G  YVD +  +N+
Sbjct: 314 REGLRAFRPDPHRIEHVATID--GVAYVDDSKATNT 347


>gi|332283266|ref|YP_004415177.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427219|gb|AEC18553.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
          Length = 468

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 120/319 (37%), Gaps = 58/319 (18%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA AIV S+A S  +          I VV        L   RL     +  +AV GT G
Sbjct: 63  RGAGAIVTSTAVSADNPEVLAARAARIPVVPRALMLAELM--RL-----KRGIAVAGTHG 115

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +     L  +F IG    ++S   + RL                 QG   
Sbjct: 116 KTTTTSLVASVLAAGDLDPTFVIG--GRLNSAGANARL----------------GQG-EF 156

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA         L  +  I    TN+  DH+D +    A   +    F + LP    A
Sbjct: 157 IVVEADESDASFLNLLPVMCI---ITNIDVDHMDTYGHDVARLKSAFIEFTQRLPFYGTA 213

Query: 245 IIYADDAYSKEVMKRAH----------NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVT 292
           ++ +DD   +E++               A  R L+V   G  +   +++  A      +T
Sbjct: 214 VLCSDDPNVREIIPFVSRPVTTYGIESEAQVRALNVRADGTLMRFDVQRQGATGALPPMT 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +S+          LPG   V NAL A  +   +G+  A ++E L   + V  RF  VG  
Sbjct: 274 VSLN---------LPGHHNVLNALAAIAVATELGVPDAAIVESLAAFNGVGRRFTQVGDF 324

Query: 351 --TNSRGGRIYV---DYAH 364
                +GG  Y    DY H
Sbjct: 325 PVAAQQGGGTYTVIDDYGH 343


>gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
 gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
          Length = 444

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 143/362 (39%), Gaps = 41/362 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R I    IF A+ G K +G+LF  +A+ +GA  +VV    +LQD          I
Sbjct: 31  VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVVDEPQNLQD--------DRI 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V N  + L   A          ++ +TG++GK++    +  + Q      FQ+  T  
Sbjct: 83  ILVKNGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQE----KFQVHYTQG 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIA----G 207
                 +N +  P        L+ LS      ++V E  ++ L +  L  +  IA    G
Sbjct: 139 ----NLNNHIGVP--------LTLLSIPENAQIAVIEMGANHLKEIEL--LSSIAQPDLG 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN G  H++     +     K  L+  L       +I ADD    +  K   +     
Sbjct: 185 YVTNFGHAHLEGFGGFEGVVKGKSELYNFLHEHHKTVLINADDPLQLQQAKAVESQISFS 244

Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +   Q  + I LK+   ++NK QV +    +D      L G +   N   A       G
Sbjct: 245 KNESTQATYCIELKE--NVNNKIQVVV----EDVVIRSNLTGNYNWSNVAAAISFGKHFG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           +    +   +E  +    R + +  +     + +D Y    +S+E  L N  T    + +
Sbjct: 299 LSPKEIKNGIENYYPANHRSQLIQKDKY--TLLMDAYNANPSSMEASLNNFSTFDGSKTV 356

Query: 386 VV 387
           ++
Sbjct: 357 IL 358


>gi|188590785|ref|YP_001919870.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|188501066|gb|ACD54202.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 872

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 141/334 (42%), Gaps = 30/334 (8%)

Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +YG++P+NI  ++VTGT+GK++    +  +  + G   + +G TST   +  +  +    
Sbjct: 470 MYGENPKNIPIVSVTGTNGKTTTTRLINHVLSKMG---YSVGMTSTEGIYVNNKCIHKGD 526

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH----QT 222
                 A + L ++ V    +E +  GL +  L          TN+  DH+         
Sbjct: 527 DSGFNSAKTILLNRDVDIAVLETARGGLIRKGLAYDIADISVITNITNDHLGLDGINSME 586

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC------------RVLSV 270
           Q ++  A   L  E + +    ++ ADD +SK ++ R                  + +S 
Sbjct: 587 QLSFVKA---LVGEAVKENGFTVLNADDKWSKTIINRIKANKIFFSKYENNELIEKNISD 643

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G    FI    +  ++N ++ +I     D    +    ++ + N + A G  + + ID  
Sbjct: 644 GGIAVFIENDYIVVVNNHKKYSIC-SINDVPLSYNGLLKYNLENIMAACGALVGMNIDYC 702

Query: 331 LVLEHLEKLHV--VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVV 387
           ++ + +   ++    GRF     + R  +I +DY H     + +L ++  I   + +I V
Sbjct: 703 MISKGIMDFNLDNNNGRFNIYEVDGR--KIILDYGHNIEGYKAVLSSLNKIKKDKDLIGV 760

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            G  GDR       +GKI  ++ D  I+ +D  R
Sbjct: 761 IGIPGDRCDDIAIEIGKICSEMLDKIIIKEDKDR 794


>gi|320352822|ref|YP_004194161.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121324|gb|ADW16870.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
          Length = 461

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 99/461 (21%), Positives = 176/461 (38%), Gaps = 94/461 (20%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA+ +V S+A +  +          + VV        L   + YG      +AV G
Sbjct: 60  AWVAGADVVVTSTAIAADNPEVVAAKEAHVPVVQRAEMLAELMRLKKYG------IAVAG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S  S V  I   +GL      PT                                
Sbjct: 114 SHGKTSTTSMVAAILAEAGLD-----PT-------------------------------- 136

Query: 183 THVSVEASSHGLDQH-RL-DGIKLIA------GSF----------TNLGRDHIDYHQTQQ 224
             V V    HGL  + RL +G  L+A      GSF          TN+  +H+DY++   
Sbjct: 137 --VVVGGKVHGLGSNARLGEGEFLVAEADESDGSFLKLSPVIEVVTNIDLEHLDYYRDID 194

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVC 283
            +       F   LP    A++  D+ +  +++ R      R+ + G   +  +   K+ 
Sbjct: 195 -HIKDMFLEFINRLPFYGVAVVCIDNDHIAQLLPRIQK---RIATYGLTEQADLQAVKII 250

Query: 284 AIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           + +   Q T+    ++   +    PG+  +YN+L A  + + + ID +++   LE    V
Sbjct: 251 SGNGTSQYTVRSRKEELGVIRLNRPGKHLIYNSLAAVSVGLELEIDFSVIARALENFQGV 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
             R +  G  + G  +  DY H    +   L  +R      R++V F     R    + +
Sbjct: 311 QRRLQIKG-EAAGVLVVDDYGHHPTEIRATLDAVREGWPDRRVVVAFQP--HRYSRTKGL 367

Query: 402 MGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNR--------IEAIR 450
             +   A   AD+ ++TD     E P E + +E +       ++G R        +E  +
Sbjct: 368 FAEFTTAFRRADVLVLTDIYAAGESPIEGVTSERLQ--EAIKQRGQRQAHFIPQLVEQPQ 425

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
             + +L   D+L+  G G    +IV  GE+ +    D+++E
Sbjct: 426 VLMPLLQPGDLLLTLGAG----NIVRAGEQVL----DLLKE 458


>gi|307610451|emb|CBX00022.1| hypothetical protein LPW_17781 [Legionella pneumophila 130b]
          Length = 441

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 125/305 (40%), Gaps = 29/305 (9%)

Query: 85  TIRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            I+   P+L  V+++ + ++S     A  +  K+   ++AV GT GK++  S +  I  +
Sbjct: 58  AIKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQ 115

Query: 140 SGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G++  F IG    +SS    +        ++ +A  Y S+                 H 
Sbjct: 116 AGMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHY 164

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              I ++     NL  DH D +    A    +       +PK   AI   DD    EV+ 
Sbjct: 165 RPNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLS 219

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R   +  R+ ++   G+   + ++      Q   +   G   +  +PL G+F V N L A
Sbjct: 220 RGQFS--RIETLALSGEAEWVAELIDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAA 277

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                  G++  +  + LE+   V  R E V +N  G  +Y D+AH   ++   +  ++ 
Sbjct: 278 IAATWNAGVNPMVAAKALEQFSPVKRRLE-VRSNRHGITVYDDFAHHPTAITKTIDALK- 335

Query: 379 ITSGR 383
             SGR
Sbjct: 336 -RSGR 339


>gi|91776623|ref|YP_546379.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
 gi|118595665|sp|Q1GYZ9|MURD_METFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91710610|gb|ABE50538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
          Length = 453

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 34/143 (23%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLA 171
            ++A+TG +GKS+V + V +IC+ +G  +   G    P   + + A D        +Y+ 
Sbjct: 111 KVIAITGANGKSTVTTLVGEICKAAGFKTVVAGNIGLPVLDVINDAVD--------VYV- 161

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L   S Q  T  S+ A                A +  N+  DH+D +   QAY NAK 
Sbjct: 162 --LELSSFQLETTYSLAAD---------------AATVLNISADHMDRYADMQAYANAKA 204

Query: 232 RLFEELLPKESPAIIYADDAYSK 254
           R+F     +    ++ ADDA+S+
Sbjct: 205 RIFT----RAGLQVLNADDAWSR 223


>gi|323137892|ref|ZP_08072967.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242]
 gi|322396895|gb|EFX99421.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242]
          Length = 469

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 50/343 (14%)

Query: 66  QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
           +GA   +   A +L D      S  I+ + P L     ++   +  + +  +    +  +
Sbjct: 51  KGASVFIGHDAKNLGDAAVVVVSTAIKRDNPELAAAREKRLPVVRRAEMLAELMRLKQCV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+ GT GK++  S V  +    GL    I     I+++  + RL                
Sbjct: 111 AIAGTHGKTTTTSLVATLLDAGGLDPTVIN-GGIINAYGTNARLGAGE------------ 157

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + VEA     D+     +KL A     TN+  +H+D+  T  A   A  R F E
Sbjct: 158 -----WMVVEA-----DESDGTFLKLPADVAIVTNIDPEHLDHFHTFDAIKEA-FRNFIE 206

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAI 285
            LP    A++  D    +E++ R  +           A  R+L V  +G       +   
Sbjct: 207 NLPFYGFAVMCLDHPTVQELVGRIEDRRVITYGENPQADVRLLDVNLEGGVSRFNVLLRD 266

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
               Q T  +E    + + P+PG     NA  A  +   +G+    + + L     V  R
Sbjct: 267 RKTAQATY-LE----NLVLPMPGHHNALNATAAITVAYQLGLSPDQIRKALAGFGGVKRR 321

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           F   G +  G +++ DY H    +  +L+  R  T G+++ V 
Sbjct: 322 FTRTG-DWNGVQVFDDYGHHPVEIAAVLRAARASTKGKVVAVM 363


>gi|239907962|ref|YP_002954703.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
 gi|259509768|sp|C4XK68|MURC_DESMR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239797828|dbj|BAH76817.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
          Length = 457

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           IA   TN+  DH+D++   +A  +A +     + P     ++  DD     ++ R +   
Sbjct: 174 IASVVTNVDADHLDHYDGIEAIDDAFVDFLNNI-PFYGVNVVCLDDPGVARILPRVNRP- 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCI 323
             +L+ G+  K     ++          +S++GK   +     PG   V NAL A G+ +
Sbjct: 232 --ILTYGFSDKARLRGRIIDSGAMSCFEVSLDGKRLGEMRLNHPGRHNVLNALGAIGVSL 289

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GI    + E L K   V  RFE  G    G  +  DY H    ++  L   R +   R
Sbjct: 290 EVGIPLGTIAEALAKFAGVGRRFERKGEKD-GVVVVDDYGHHPAEIKATLATARAVYPER 348

Query: 384 IIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP 425
            +VV      R    + + G      + AD  ++T+  P SE P
Sbjct: 349 RLVV-AFQPHRFSRTKALFGDFCTCFEAADELLLTEIYPASEAP 391


>gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 457

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 135/333 (40%), Gaps = 53/333 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR      +F+AI G   DGH F+P  + +G +++V+      +     +  N P  VV
Sbjct: 34  DSRTCLKNDLFIAIKGKNFDGHNFLPDVLNKGVKSVVIK-----EGMQKLLPDNFPCWVV 88

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG---LS----SFQIG 148
            +T             K    ++A+TG+ GK++    V ++  + G   LS    + +IG
Sbjct: 89  SDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTTTKEMVGEVLNKLGKIKLSHANFNNEIG 148

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              TI +  +++++              +  +G+  +        L ++    I +I   
Sbjct: 149 VGLTILATDKEDKVLVLE----------MGMRGLGQI------ENLSKYSKPDIAVI--- 189

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHNAGC 265
            TN+G  HI    +++    AK  + + L PK    II A+D   +E ++   +      
Sbjct: 190 -TNIGTAHIGLLGSKKNITYAKCEISKFLNPK-GVVIIPANDLLLEETLREYWKGRVTKV 247

Query: 266 RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +L++  Q   F     +   +N    TI +E   F+  F   G     N L+A  +   
Sbjct: 248 ELLNIENQNDSFKKDNNLRGFYNPSNKTILIEENIFEISF--EGFHNASNFLLAYAVAKE 305

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +GID     E   K       F+FV   S GGR
Sbjct: 306 LGID----FESFNK-------FDFV---SLGGR 324


>gi|108758952|ref|YP_630922.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Myxococcus xanthus DK 1622]
 gi|108462832|gb|ABF88017.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Myxococcus xanthus DK 1622]
          Length = 410

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPI 401
           PGR E VG       + +D AH    +E++L +++ +  GR + +VFG  GD+D+G  P+
Sbjct: 268 PGRLEEVGQQPI---LLLDGAHNPAGVEVLLASLKDLYPGRRLHLVFGVVGDKDRG--PM 322

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           M  +  + A + +   + PRS  PE   AE
Sbjct: 323 MRALLPECASVQLTPLETPRSLAPEAYLAE 352


>gi|15604275|ref|NP_220791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           prowazekii str. Madrid E]
 gi|6225735|sp|Q9ZDC2|MURD_RICPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3860967|emb|CAA14867.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (murD) [Rickettsia
           prowazekii]
 gi|292572022|gb|ADE29937.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Rickettsia
           prowazekii Rp22]
          Length = 445

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 45/243 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I   +GL     G                  P   AKA    
Sbjct: 107 IAITGTNGKSTTTALISHILNSNGLDYPVAGNIGV--------------PALQAKA---- 148

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S++G     +E SS  LD  +   +K+      N+  DH+D +Q    Y  AK ++F+  
Sbjct: 149 SNEGYV---LELSSFQLDLVKSFTVKV--AVLLNITPDHLDRYQDMNDYIAAKAKIFDR- 202

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNK-QQVT 292
           + K+S A+I  D+ Y            CR + V  Q     K I       + N    V 
Sbjct: 203 MDKDSYAVINIDNDY------------CRKIFVLLQKDQSIKLIPFSVTKILKNGISIVD 250

Query: 293 ISVEGKDFDFLFPLPGEFQ-VYNAL-VAAGLCIA--IGIDSALVLEHLEKLHVVPGRFEF 348
             +   D  +  PL    Q ++N   +AA   +A  IG++S  +LE +     +  R ++
Sbjct: 251 DKIHDNDLTYKLPLNKNLQGLHNCENIAASYAVAKIIGLESKKILESISSFQSLHHRMQY 310

Query: 349 VGT 351
           +G+
Sbjct: 311 IGS 313


>gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 457

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 141/357 (39%), Gaps = 51/357 (14%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+AG +F+ + G + DGH FI  A  QGA A +          S    +  P ++V
Sbjct: 32  DSRLIEAGDLFIPLKGAR-DGHDFIATAFDQGATATL----------SERPVAEGPYVLV 80

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSSFQIG 148
           D+        A     K   ++LAVTG++GK++    + Q+   S       G  + +IG
Sbjct: 81  DDVLAAFQALAQYYLEKTGVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIG 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
              T+     D                 +   G  H+         D H L  I K   G
Sbjct: 141 LPYTVLHMPDDTE-------------KLVLEMGQDHLG--------DIHLLSEIAKPKTG 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +G  H+++  ++      KM++ + +  K+   ++   D    + +        +V
Sbjct: 180 IVTLVGEAHLEFFGSRTEIAKGKMQIADGM--KKGGLLLVPADKIVNDFLPDQQ----KV 233

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +  G     I L ++     K  +T      +     P+ G++   NA++A+ + +  G+
Sbjct: 234 VRFGPDAD-ICLTRLE--ERKDSLTFEANFLEQAIDLPVTGKYNATNAMIASYVALQEGV 290

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
             + + +   +L +   R E+    + G  I  D Y     ++ +IL+    I + +
Sbjct: 291 SESAIRQAFAQLELTRNRTEWKKA-ANGADILSDVYNANPTAMRLILETFSAIPASQ 346


>gi|85703766|ref|ZP_01034870.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217]
 gi|85672694|gb|EAQ27551.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217]
          Length = 465

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 135/332 (40%), Gaps = 50/332 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GAE +V+SSA         I+   P L     R    +  + +  +    ++ +AV GT 
Sbjct: 70  GAEVVVISSA---------IKPGNPELDEARKRGLPVVRRAEMLAELMRLKSNIAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V ++  + G+    I     I ++  + R+                 QG   
Sbjct: 121 GKTTTTTLVAELLVKGGIDPTVIN-GGVIHAYGSNARM----------------GQGEWM 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI----DYHQTQQAYFNAKMRLFEELLPK 240
           V VEA       +RL     I    TN+  +H+    D+ + +Q +++     F   +P 
Sbjct: 164 V-VEADESDGTFNRLPATIAI---VTNIDPEHMEHWGDFERLRQGFYD-----FVSNIPF 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVE 296
              A+   D    + ++ R  +   RVL+ G+  +   ++ V   + K      V +  E
Sbjct: 215 YGLAVCCTDHPEVQALVGRITDR--RVLTYGFNAQ-ADVRAVNLTYEKGVAHFDVALQAE 271

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+  +    P+PG+  V NAL A  +   +G+ +  +   L     V  RF  VG    G
Sbjct: 272 GRVIEGCTLPMPGDHNVSNALSAVAVARHLGMKADEIRAALASFGGVNRRFTRVG-EVDG 330

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             I  DY H    +  +L+  R  T+GR+I V
Sbjct: 331 VTIIDDYGHHPVEIAAVLRAARQATTGRVIAV 362


>gi|324995316|gb|EGC27228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK678]
          Length = 456

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 158/388 (40%), Gaps = 74/388 (19%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-----AEAIVVSSAYS 78
           Q+    +     DSR I++G +FV + G + DGH FI  A AQG     +E  V   AY 
Sbjct: 20  QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEGAY- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137
                         ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 78  --------------ILVDDVLTAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                 +  G  + +IG   T+    +D                 +   G  H+      
Sbjct: 124 TTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD 
Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGL-RKDGLLIVPAD- 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FP 305
               +++     A C+++  G     I L ++     +++ ++S E    +FL      P
Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLP 268

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + G++   NA++AA   +  G+  A + +   +L +   R E+    + G  I  D Y  
Sbjct: 269 VTGKYNATNAMIAAYTALQEGVSEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNA 327

Query: 365 TSNSLEMILKNIRTITS---GRIIVVFG 389
              ++ +IL+   TI +   GR + V  
Sbjct: 328 NPTAMRLILETFSTIPANPGGRKLAVLA 355


>gi|281421048|ref|ZP_06252047.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
 gi|281404966|gb|EFB35646.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
          Length = 445

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 120/303 (39%), Gaps = 51/303 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I          TP   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIYHIIKSAG---YDVGLAGNIGKSLALQVAETPHKYYV------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y    Q Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYKFRANVAILLNITPDHLDRYEFKMQNYTDAKMRITQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++S      D   +KE+ K    +              HL        +  V    
Sbjct: 203 NQTEEDSFIFWNDDPIVTKELAKYNLKS--------------HLCPFSEFKEEGCVGFIE 248

Query: 296 EGK---DF--DFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +GK   +F  DF  P     L G+  +YN+L A   C  +GID   + + L     V  R
Sbjct: 249 DGKYKLNFPSDFEMPQADMSLRGKHNIYNSLAAGLACNIVGIDHETLHKGLSDFPGVEHR 308

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG--CGGDRDQGKRPIMG 403
            E VG     G  YV+ +  +N ++     + ++T+  I+++ G   G D +Q K  +  
Sbjct: 309 LEKVGKFQ--GVYYVNDSKATN-VDACWYALESMTTPTILIIGGKDKGNDYNQIKDLVKE 365

Query: 404 KIA 406
           K A
Sbjct: 366 KCA 368


>gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
 gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           ++P +      + +++D+R I  G +F+A+ G   DGH ++  A  +GA A +V +  + 
Sbjct: 17  VYPGEAYNITFSSINTDTRAINHGDVFIALKGPNFDGHNYLDVATRKGAAAAIVETPNTN 76

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            D         P   V ++ K L         K    ++ VTG+ GK++V   +  IC  
Sbjct: 77  LDL--------PQWCVGDSYKALGELGLASREKFNGKVIGVTGSCGKTTVKGMLAAICSL 128

Query: 140 SG 141
           +G
Sbjct: 129 AG 130


>gi|294784927|ref|ZP_06750215.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27]
 gi|294486641|gb|EFG34003.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27]
          Length = 468

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 14/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-L 268
           TN+  DH+D H       N K    E +   +  AII  D    KE + R       +  
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIEFISHTQKEAIICMDCENLKEAITRLPKGKSVITY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+  +   I  K +     K    + +  +   +F   +PGE  + N+L    L +  G+
Sbjct: 238 SIKDENASIFAKNIRITDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVIYLALKFGV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + E L K      R++ +         G  ++  RI  DYAH    +++ LK I++
Sbjct: 298 SKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKKVRIIDDYAHHPTEIKVTLKAIKS 357

Query: 379 ITSGRIIVVF 388
           I + R++ +F
Sbjct: 358 IDTSRLVAIF 367


>gi|317050839|ref|YP_004111955.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5]
 gi|316945923|gb|ADU65399.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5]
          Length = 453

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 131/325 (40%), Gaps = 39/325 (12%)

Query: 68  AEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +V SSA S +  + +   R   P++          + A  +  KH    + + G  G
Sbjct: 65  AHVVVTSSAVSKENPEVAEARRKRIPVI------SRAEMLAELMRMKHG---VLIAGAHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +GL      PT  I    + N++ + + +           QG   V
Sbjct: 116 KTTTTSLVATVLTDAGLD-----PTVVIG--GRLNKIKSNAKL----------GQGDLIV 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S G   H    +  +    TN+ ++H+D++ + +   N  ++   +  P    + 
Sbjct: 159 AEADESDGSFMH----LPPVLSVVTNIDKEHMDHYGSMENLKNTFLKFINKT-PFFGVSF 213

Query: 246 IYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           +  DD + ++++ R   +     L+        H+++       Q+  ++  G++  +F 
Sbjct: 214 VCLDDEHIQDILPRIERSHVTYGLNTNADIFAHHIRRTNGC---QRFDVNYNGRELGEFR 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG   V N+L   G+ +   +    +   LE    V  RFE  G +  G  +  DY 
Sbjct: 271 LCLPGVHNVVNSLPVIGIALEFEVPVDTIRHSLEHFAGVHRRFEITG-HMNGFAVVDDYG 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388
           H    +  +LK  R   SG++I +F
Sbjct: 330 HHPTEIMAVLKAAREWYSGKVIAIF 354


>gi|325479251|gb|EGC82347.1| bifunctional protein FolC [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 422

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 11/166 (6%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV---PGRFEFVGTNSRGGRIYVDY 362
           L G  Q+YNA  A  +         L  E + K  +    PGR + + TN R   I VD 
Sbjct: 250 LIGNHQIYNAATALMVIDFFKDKFNLTDEDIYKGMLEAKNPGRLQLISTNPR---ILVDG 306

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNP 420
           +H   +++ +  +I+     ++IV F    D+D     ++ K+   +AD  +VT+  +NP
Sbjct: 307 SHNKEAIDALASSIKNYNYDKLIVGFSILEDKDY--TYVIDKLT-SIADEIVVTEITENP 363

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           R+ + +K+ + +   +P  I   + IEA        N+ D++V  G
Sbjct: 364 RAFELDKLYSLVKSKLPNTISIKDNIEAFEYTKNTANENDLVVWCG 409


>gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
 gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
          Length = 436

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VVS     +D 
Sbjct: 1   MPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSR----EDC 56

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           +A   +    L VD+T   L   A          +  +TG+ GK++V   +  + +R
Sbjct: 57  AALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRR 109


>gi|49185041|ref|YP_028293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|254737215|ref|ZP_05194919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254759045|ref|ZP_05211072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Australia 94]
 gi|49178968|gb|AAT54344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
          Length = 243

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA
Sbjct: 4   KKFEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +   +Y       +     PI+ VD+T   L   A     +    ++ +TG++GK++
Sbjct: 62  IASLWKKSY------GSPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTT 115

Query: 129 VASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRL 162
           V   V+ I + +       G  + QIG   TI    +D  +
Sbjct: 116 VKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEI 156


>gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
 gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
          Length = 447

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 50/375 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++KI   + DS+ +Q G +F A+ GN  DGH F+  A   GA A VVS  Y    F    
Sbjct: 23  DKKITGFAIDSQKVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGDSFGLE- 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                ++ VD+T+  L    S         ++ +TG+ GK++   F + I   S +    
Sbjct: 82  -----LIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTIL--SSIYKTH 134

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             P S       +++LT P  + +A+       + V  + +  S  G  Q  L  ++   
Sbjct: 135 ASPKSY------NSQLTVPLSLLMAEG-----DEDVMILEMGVSEPGNMQDLLRIVQPEI 183

Query: 207 GSFTNLGRDH-IDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261
              T++   H + + Q  Q     K  + +    +LLPK+SP   Y D         R+ 
Sbjct: 184 AVITHINDQHAMHFPQGIQEILKEKSYILQKSKLQLLPKDSP--YYLD--------LRSC 233

Query: 262 NAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQ--VYNALV 317
           +      S  +      L   C  AI      ++ ++  + ++  P+   ++    N L+
Sbjct: 234 SPTAEKFSFSFNDP---LADFCYKAISGD---SVVIQTPEENYCLPIAFSYKPAYTNLLI 287

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376
           A  L   + +    V+  L +L + P RFE    + R G   ++ A+ +    MI   + 
Sbjct: 288 AVALSWILEVPEEGVIRSLPELKLPPMRFEH---SMRNGMQVINDAYNACPEAMIAALDA 344

Query: 377 RTITS--GRIIVVFG 389
             + S  G+II++ G
Sbjct: 345 LPLPSDGGKIILILG 359


>gi|218512669|ref|ZP_03509509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           8C-3]
          Length = 216

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           F AI G++ DGH +   A+A GA  +VVS A       A  R   P++VVD+    L   
Sbjct: 3   FFAIKGDRVDGHDYASMAMANGASLLVVSEAR----LPAMGRLTVPMIVVDDVLAALGRL 58

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                 +    I+AVTG+ GK++    ++ +   SG
Sbjct: 59  GQASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSG 94


>gi|182677686|ref|YP_001831832.1| UDP-N-acetylmuramate--L-alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|229486470|sp|B2IGG1|MURC_BEII9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182633569|gb|ACB94343.1| UDP-N-acetylmuramate--alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 476

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 13/189 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+D+ +T  A   A  R F E +P    A++  D    +E++    +       
Sbjct: 181 TNIDPEHLDHFKTFDAIKQA-FRAFIENIPFYGFAVMCLDHPVVQELVGTIEDRRIITYG 239

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R++ V   G       V       Q     E +  D L P+PG     NA  A
Sbjct: 240 ENPQADMRLVDVNLDGGMSRFNVVVRDRKAGQGKRFEERRVEDLLMPMPGLHNALNATAA 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + + +G+    +   L     V  RF   G    G +I+ DY H    +  +L+  R 
Sbjct: 300 LSVALQLGMSDDAIRSALRGFGGVKRRFTRTG-EWNGAQIFDDYGHHPVEIAAVLRAARA 358

Query: 379 ITSGRIIVV 387
            T G++I V
Sbjct: 359 STKGQVIAV 367


>gi|218710689|ref|YP_002418310.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
 gi|218323708|emb|CAV20053.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
          Length = 452

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 142/344 (41%), Gaps = 53/344 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFAS-RLYGKHPEN 116
           F P  +    + +V+ +A S        R N  +  V+DN  ++ S     + +  H   
Sbjct: 53  FDPSQLEPRPDLVVIGNAMS--------RGNPCVEYVLDNNLRYTSGPQWLQEFLLHDRW 104

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK++ +S +  I +  G +  F +G    + +F    RL   S  ++ +A  
Sbjct: 105 VLAVSGTHGKTTTSSMLAWILEDCGYAPGFLVG--GVLGNFGISARLGE-SMFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    +        NL  DH D     +A      R F 
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----KRQFH 205

Query: 236 ELL---PKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQ 290
            L+   P         +D   ++V+ R    GC     S G QG +   KK+  + +  Q
Sbjct: 206 HLVRTVPGNGRIFSPKEDTAIQDVLSR----GCWSETESSGEQGDW-DAKKL--VKDGSQ 258

Query: 291 VTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +  +G+     D+D    L G+  V NAL+A      +G+   L  E L K      R
Sbjct: 259 FGVYFQGECVGTVDWD----LVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRR 314

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            EF G  + G  +Y D+AH   ++E+ L  +R  + + +II V 
Sbjct: 315 LEFKGEVA-GVSVYDDFAHHPTAIELTLGGLRNKVDTKKIIAVL 357


>gi|71275121|ref|ZP_00651408.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|170731110|ref|YP_001776543.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M12]
 gi|229620438|sp|B0U4Z6|MURC_XYLFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71163930|gb|EAO13645.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|167965903|gb|ACA12913.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M12]
          Length = 477

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 130/334 (38%), Gaps = 48/334 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I              +  A A + L +  
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL+ +  +    TN+  DH++ +    +        F + LP  
Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    EV + A  A   V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDD---PEVAELAGKARRHVMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
            R+  DY H    LE +    R      R++V F
Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
 gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
          Length = 494

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 151/380 (39%), Gaps = 71/380 (18%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---- 88
           ++ DSR  + G ++VA+ G + DGH F+  A++ GA   +V     +Q     +R     
Sbjct: 30  LTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALV-----MQPLDEAVRMLAAE 84

Query: 89  -NTPILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               ++ V +T   ++  A    S L+G+    ++A+TG++GK++  + V+ +       
Sbjct: 85  LGASVIEVPDTAHAVADIAREWRSHLHGR----VIALTGSTGKTTTKNLVRDVL------ 134

Query: 144 SFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--H 197
                  ST+S+ A    Q+N L  P  +  A+       Q    V VE    G  Q   
Sbjct: 135 ------ASTLSTVATAGNQNNELGVPKTLLAAE-------QDTQAVVVEMGMRGAGQLAD 181

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
             D ++   G   N+G  HI+   +++    AK  L   L      A + ADD Y+  V 
Sbjct: 182 LCDYVRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVR 241

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---------KQQVTISVEGKDFDFL----- 303
           + A     RV +V + G     ++                +QV +  +G+    L     
Sbjct: 242 EHARLDARRVETVLFDGSAAAAERRAQADAAEAARPAVWAEQVELDEQGRPRFRLHAVGF 301

Query: 304 ------------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                         L G   V NA  A  +  A GI  A+  + L       GR E +  
Sbjct: 302 ADAPEEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVL-- 359

Query: 352 NSRGGRIYVDYAHTSNSLEM 371
            +RGG   V+ A+ +N   M
Sbjct: 360 RARGGFTVVNDAYNANPDSM 379


>gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
 gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++++  V +DSR + AG  FV + G + DGH F+  A  QG +A VV+     +D    +
Sbjct: 27  QQRLGPVCTDSRLLTAGAFFVPLRGERFDGHRFLASATEQGIQAAVVA-----RDSDIPV 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +    +VD+T +     A  +       ++A+TG++GK++    ++      G     
Sbjct: 82  PQSLLHWIVDDTLEAYQQMACLVRRNLNSAVVAITGSAGKTTTRELIRAALAPLGAVQAS 141

Query: 147 IG 148
           IG
Sbjct: 142 IG 143


>gi|251778502|ref|ZP_04821422.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082817|gb|EES48707.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 872

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 173/408 (42%), Gaps = 42/408 (10%)

Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +YG++P+NI  ++VTGT+GK++    +  +  + G   + +G TST   +  +  +    
Sbjct: 470 MYGENPKNIPIVSVTGTNGKTTTTRLINHVLSKMG---YSVGMTSTEGIYVNNKCIHKGD 526

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH----QT 222
                 A + L ++ V    +E +  GL +  L          TN+  DH+         
Sbjct: 527 DSGFNSAKTILLNRDVDIAVLETARGGLIRKGLAYDIADVSVITNITNDHLGLDGINSME 586

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC------------RVLSV 270
           Q ++  A   L  E + +    ++ ADD +SK ++ R                  + +S 
Sbjct: 587 QLSFVKA---LVGEAVKENGFTVLNADDKWSKTIINRIKANKIFFSKYENNELIQKNISD 643

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G    FI    +  ++N ++ +I     D    +    ++ + N + A G  + + ID  
Sbjct: 644 GGIAIFIENDYIVVVNNHKKYSIC-SINDVPLSYNGLLKYNLENIMAACGALVGMNIDYC 702

Query: 331 LVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVV 387
           ++ + +     +   GRF     + R  +I +DY H     + +L ++  I   + +I V
Sbjct: 703 MISKGIMDFNLNNNNGRFNIYEVDGR--KIILDYGHNIEGYKAVLSSLNKIKKDKDLIGV 760

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGN-- 444
            G  GDR       +GKI  ++ D  I+ +D + R  +  +I + + +G+    E  N  
Sbjct: 761 IGIPGDRCDDIAIEIGKICSEMLDKIIIKEDRDRRGREQGEIASLLKNGV--LRENKNSK 818

Query: 445 ------RIEAIRTAIEMLNKQDVLVVAGKGHET-VHIVTNGEKKMSVD 485
                  I+A+  A+ +  K D +VV  +  E+ V  + N +   S+D
Sbjct: 819 IHVCLDEIKALEKALMISKKGDTIVVFFEDLESIVKYIKNKDSNNSLD 866


>gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
 gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
          Length = 536

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V SDSR I+ G +FVAIVG   DGH ++  A   GA   +V              +N 
Sbjct: 56  NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVE--------GTNL 107

Query: 91  PILVVDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +VV+N+ + L L A      R     P  I+ +TG+ GK++    ++ +    G +  
Sbjct: 108 NQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLGETVA 167

Query: 146 QIG 148
            +G
Sbjct: 168 PVG 170


>gi|297623832|ref|YP_003705266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera
           radiovictrix DSM 17093]
 gi|297165012|gb|ADI14723.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera
           radiovictrix DSM 17093]
          Length = 450

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 97/240 (40%), Gaps = 43/240 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           IL +TGT+GK++V  ++      +GL +                    P+   +  AL+ 
Sbjct: 96  ILGITGTAGKTTVTRWLSHTLTLAGLDA--------------------PAGGNVDPALAA 135

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +++ G   V+ E SS  L+  R   +        NLGRDH+D H +  AY  AK RL   
Sbjct: 136 VAAPGRVLVT-ELSSFQLE--RCPSLHPRVAVVLNLGRDHLDRHGSLAAYHAAKKRLIAH 192

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKK-VCAIHNKQQ 290
           L P+++   +Y  D    + + RA        + G+      G   HL   +  +H +  
Sbjct: 193 LTPEDT--FVYNHD----DPLVRAWAEASPARTWGFSAAPTPGSAAHLADGMLTLHGRPL 246

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V +            L G+    NAL  A    A G+    +   LE    VPGR+  VG
Sbjct: 247 VAVRA--------LQLTGQHHRLNALAVALAAAAWGLGDEAIRAGLESFSGVPGRYSVVG 298


>gi|291518352|emb|CBK73573.1| UDP-N-acetylmuramate--L-alanine ligase [Butyrivibrio fibrisolvens
           16/4]
          Length = 414

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 118/329 (35%), Gaps = 64/329 (19%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A I  + P L+         L  + L G+  EN    + V GT GK++  S V QI  
Sbjct: 54  YTAAISDDNPELMAAKASGKPMLTRAELLGEIMENYANSITVAGTHGKTTTTSMVSQILL 113

Query: 139 RSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +        PT T+ +       N     S I++A+A  Y +S            H   
Sbjct: 114 ETSKE-----PTITVGAILDAIHSNVHVGDSDIFVAEACEYTNS-----------FHSF- 156

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAY 252
                   +I     N+  DH+D+ +       A  R F E    +   II     + +Y
Sbjct: 157 ---FPKYNII----LNVEADHLDFFKNLDN-VRASFRKFAENTSDDGALIINNEIDNVSY 208

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL------ 306
             E +K      C+V++    G            +     IS   K F    P+      
Sbjct: 209 FTEGLK------CKVITYALHGD----------ADIVPTEISYNEKGFASFVPVYKGQAL 252

Query: 307 -------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                  PG+  + NAL A  LC+ +G+D + +   L K      RFE  G   +G  + 
Sbjct: 253 ERITLNVPGDHNISNALSAIVLCLEMGVDYSCIKTGLSKFGGAHRRFELKGI-YKGATVI 311

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            DYAH    +   L         RIIV F
Sbjct: 312 DDYAHHPTEIRASLAAAANYPHNRIIVCF 340


>gi|257791840|ref|YP_003182446.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|317489841|ref|ZP_07948337.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|257475737|gb|ACV56057.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|316911055|gb|EFV32668.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
          Length = 475

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 152/439 (34%), Gaps = 73/439 (16%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENIL 118
           P  I +G   IVVS+A         I  N P L     R       +++  Y       L
Sbjct: 60  PANIPEGNPVIVVSTA---------ILDNNPELAAAKARGLTIWHRAQMLAYLGRALQTL 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV GT GK++ +S +  +    G       PT  I              I  A   +  S
Sbjct: 111 AVAGTHGKTTTSSMLASVLDGMGED-----PTFLIGG------------IVRAYGTNAHS 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  H  VEA         L    ++    TN+  DH+D+++     +  K   F   +
Sbjct: 154 GTG-AHYVVEADESDKSFMHLSPRAVL---VTNIEADHLDHYRDLDEIYE-KFASFIGSV 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P +   ++   +   + +++ A  +G R+ + G+          C +         V G 
Sbjct: 209 PDDGGVVVACGE--DEALVRVARASGKRLFTYGF-------SDACDVRIASYEPNGV-GS 258

Query: 299 DFDFLFP-----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           DF    P            PG   V NA    GL  A+G D A   E L     V  RF+
Sbjct: 259 DFTLELPDGSVVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADFAGVKRRFD 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-- 405
            VG  + G  +  DYAH    +   ++    +    + V+F         + P+  ++  
Sbjct: 319 LVG-EAGGVTVVDDYAHHPTEIAATIEAASHLGFAHVHVLFQP---HRYSRAPLFTEVLK 374

Query: 406 -----ALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKG---NRIEAIRTA 452
                A D AD     D  P  E P      K    ++    G  E      RIE +   
Sbjct: 375 DDFGRAFDAADAVTFMDVYPAGEAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEVVPYL 434

Query: 453 IEMLNKQDVLVVAGKGHET 471
              L + D+L+  G G  T
Sbjct: 435 AGKLGEGDLLITMGAGDVT 453


>gi|291615178|ref|YP_003525335.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585290|gb|ADE12948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 480

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 159/384 (41%), Gaps = 27/384 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M   + + + VS+D+R IQ G +F+A+ G   DG  F+ QA   GA A VV+    L+  
Sbjct: 15  MDGADVRFSAVSTDTRTIQQGDLFIALKGENFDGARFVAQAAMAGAVAAVVNRDAGLR-- 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ---- 138
             T  S  P+L V++TR  L   A+    +    ++A+TG++GK++V   +  I +    
Sbjct: 73  --TQDSGVPLLFVEDTRLALGELAAYWRAQFDIPLVAITGSNGKTTVKEMLSAILRQKIK 130

Query: 139 -----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                RS     ++G       F    +    + I +   L  L +     V     +H 
Sbjct: 131 DDSYDRSLAPRERVGECDDADRFVLATKGNFNNDIGMPLTLLRLRANHRYAVIEMGMNH- 189

Query: 194 LDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              + +D +  IA        N    H+    T +    AK  +F   L  +  A+I AD
Sbjct: 190 --PNEIDYLTRIACPDVALVNNATGAHLQGLGTVEGVARAKGEIFAG-LKDDGTAVINAD 246

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           DA++   + R+     RVL    +       K        ++ +     +   +  +PGE
Sbjct: 247 DAHA--ALWRSLAGKHRVLDFSLEHPANIQGKWVVQGYGGELLVRTPAGEMRIVLQVPGE 304

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-- 367
               NAL AA   +A+ I SA ++  L+    V GR +     ++ G   +D  + +N  
Sbjct: 305 HNARNALAAATAALALQIPSATIVTGLQGFGGVAGRLQR--KQAKNGATLIDDTYNANPA 362

Query: 368 SLEMILKNIRTITSGRIIVVFGCG 391
           S+   L+ +      RI V+   G
Sbjct: 363 SMHAALEVLAQAKGKRIFVLGDMG 386


>gi|163786568|ref|ZP_02181016.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
 gi|159878428|gb|EDP72484.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
          Length = 880

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 122/322 (37%), Gaps = 29/322 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A +GT+GK++    +  I +  G   +++G T++   + Q+  L T      A A   
Sbjct: 487 IIATSGTNGKTTTTRLIAHIAKMKG---YRVGYTTSDGVYIQNRLLMTGDCTGPASAEFV 543

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLF 234
           L    V    +E +  GL +  L   K      TN+  DH+      T +     K  + 
Sbjct: 544 LKDPTVNFAVLECARGGLLRAGLGFKKCDVAVVTNVAADHLGLKGIHTIEQLAKVKAVVP 603

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNK 288
           E +LP +  AI+ ADD    + M+R  N  C V           +K       + A++  
Sbjct: 604 ETVLP-DGYAILNADDDLVYD-MRR--NVDCNVALFSMDENNPRVKALQRKGGITAVYEN 659

Query: 289 QQVTIS--------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI---DSALVLE-HL 336
             VTI         +E  +    +    +F + N L A       GI   D    LE  +
Sbjct: 660 GWVTICRGEWKMRIMEAVNIPLTYGGKAKFMIQNVLGAVLAAHVQGISIEDMKAALETFI 719

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 PGR      N     I +DYAH    +  + K    + +   + +    GDR  
Sbjct: 720 PSASQTPGRLNLFEFNDFS--ILLDYAHNPAGMRALQKFTDELDATVKVGIIAGIGDRRV 777

Query: 397 GKRPIMGKIALDLADIAIVTDD 418
                MG IA ++ D  I+  D
Sbjct: 778 EDNNEMGSIAAEMFDEIIIRQD 799


>gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
 gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
          Length = 468

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 8/106 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+DSR +  G +FVA+ G + D H F+    A+GA A +VS   +         ++ 
Sbjct: 27  SRVSTDSRSVGEGDLFVALKGERFDAHDFLADVAARGANAALVSREGA--------PASL 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           P L V +TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 79  PQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKTTVKEMIASI 124


>gi|257066693|ref|YP_003152949.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
 gi|256798573|gb|ACV29228.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
          Length = 439

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 120/307 (39%), Gaps = 65/307 (21%)

Query: 114 PE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           PE  I+A TGT+GK+S  S +  I   SG  +  +G    I           PS I+   
Sbjct: 95  PEAKIIATTGTNGKTSTTSMISHILNESGRKAISVG---NIGEGILWQMYENPSAIF--- 148

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                        S E SS  L  H +   K      TN+  DHID+H +   Y N+K+ 
Sbjct: 149 -------------SCELSSFQL--HDVSTYKPHIACITNITEDHIDWHGSFDDYINSKLN 193

Query: 233 LFEE-------LLPKESPAII--YAD------DAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           +  +       ++  E P ++   AD      +  SKE + R        +    QGK I
Sbjct: 194 ICRKQDSGDFLVINHEDPILVDHKADFRAKVYEFSSKEEVDRGAYLKGSSIFFKDQGKNI 253

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL-CIAIGIDSALVLEHL 336
            L  V          +S+ G+              Y  L+AA L C   G+    ++   
Sbjct: 254 KLMDVD--------DLSIIGR------------HNYENLMAAILACFIYGVSIEDIIRGS 293

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRD 395
           +    +  R EFV T+ RG R+Y D   T+     +  +++ I S  + IV+   G D++
Sbjct: 294 KSFKSIEHRLEFV-TDIRGIRVYNDSKGTN-----VDSSVKAIQSFDKPIVIIAGGYDKN 347

Query: 396 QGKRPIM 402
               P +
Sbjct: 348 IDYSPYI 354


>gi|149377261|ref|ZP_01895008.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
 gi|149358449|gb|EDM46924.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
          Length = 481

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 105/280 (37%), Gaps = 35/280 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S +  +   +GL      PT  I                L  A +  
Sbjct: 122 IAVAGTHGKTTTTSLIASVLGEAGLD-----PTFVIGG-------------KLNSAGTNA 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  ++  EA     D   L    +I+   TN+  DH+D +             F   
Sbjct: 164 QLGGSRYLVAEADES--DASFLHLTPVIS-VVTNIEADHMDTYGGDIERLKQTFVDFLHN 220

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           LP    A++  DD + +E++ R   A    G       Y+ + I    +     + +  +
Sbjct: 221 LPFYGVAVMCVDDGFVQEIIPRISRAIITYGIDNPDADYRAENIESDGL-----RTRFVV 275

Query: 294 SVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              G   D D    +PG   V NAL A  +    G+D A +   L     V  RF+  G 
Sbjct: 276 RRPGGRSDLDVELKMPGRHNVQNALAAIAVATDEGVDDAAICRGLAGFAGVGRRFQVYGD 335

Query: 352 -NSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVF 388
            ++R G + +  DY H    +E +++  R     R +V+ 
Sbjct: 336 YSTRKGTVTLIDDYGHHPTEVEAVIRAARDAWPDRRLVML 375


>gi|148381488|ref|YP_001256029.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930938|ref|YP_001385863.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934724|ref|YP_001389270.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. Hall]
 gi|166222973|sp|A7FPH5|MURC_CLOB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222974|sp|A5I7S3|MURC_CLOBH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148290972|emb|CAL85108.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152926982|gb|ABS32482.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930638|gb|ABS36137.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           Hall]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 121/322 (37%), Gaps = 51/322 (15%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           ++A I S+ P +     +    +    F   L   +  NI A++GT GK++  S +  + 
Sbjct: 75  YTAAIASDNPEITKAKEKNIKLMDRADFLGNLMKGYKYNI-AISGTHGKTTTTSMLSHVA 133

Query: 138 QRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            ++      + PT  +         N     S  ++ +A  Y SS               
Sbjct: 134 LKA-----NVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSF-------------- 174

Query: 195 DQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                  +K     G   N+  DH+DY++      NA  + F +L+PK+   + Y +D  
Sbjct: 175 -------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDKN 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPL 306
            + ++K A    C V++ G     I        +K C   +     +    K F     +
Sbjct: 227 IQSIIKEA---SCNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLNV 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + N+L +  + +A  +    ++E +E       RFE  G  +    I  DYAH  
Sbjct: 280 PGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHHP 338

Query: 367 NSLEMILKNIRTITSGRIIVVF 388
             +   L   +     ++  VF
Sbjct: 339 TEISATLDAAKKYPHNKLFCVF 360


>gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
 gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
          Length = 536

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V SDSR I+ G +FVAIVG   DGH ++  A   GA   +V              +N 
Sbjct: 56  NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVE--------GTNL 107

Query: 91  PILVVDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +VV+N+ + L L A      R     P  I+ +TG+ GK++    ++ +    G +  
Sbjct: 108 NQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLGETVA 167

Query: 146 QIG 148
            +G
Sbjct: 168 PVG 170


>gi|218671407|ref|ZP_03521077.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium etli GR56]
          Length = 247

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G  F AI G++ DGH +   A+A GA  +VVS A       A  R   P++VV++    L
Sbjct: 39  GEAFFAIKGDRVDGHDYASMAMANGASLLVVSEAR----LPAMGRLTVPMIVVEDVLAAL 94

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                    +    I+AVTG+ GK++    ++Q+   SG
Sbjct: 95  GKLGLASRERSKARIIAVTGSVGKTTTKEMLRQVLSPSG 133


>gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii L2-6]
          Length = 457

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 27/237 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + I  V++DSR +  G IFVA  G + DGH F  +A+ +GA  +V++           + 
Sbjct: 22  QPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKALEEGAAYVVLNHPVE------GVP 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +   ++  D+    + + A+     HP+ ++ VTG+ GK++           + ++ F  
Sbjct: 76  AERAVISPDSYHAMMVMGANYRGQFHPK-VVGVTGSVGKTTTKQMTY-----AAIAGF-- 127

Query: 148 GPTSTISSFA-QDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              +TI +   Q+N L  P  ++ + +   Y +   G++H        G  +      + 
Sbjct: 128 --GNTIKTEGNQNNELGLPRTMFRIGRDTEYAVVEMGMSHA-------GEIERLAKCARP 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             G  T +G  HI    +Q+    AK+ +   L  + SP ++  DD + ++     H
Sbjct: 179 DVGIITCIGVSHIGNLGSQENICKAKLEICAGLA-EGSPLVLNGDDPFLRKAALPTH 234


>gi|170781766|ref|YP_001710098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156334|emb|CAQ01482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 514

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 20/192 (10%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SSH L  H +  ++  + +F NL  DH+++H ++QAY  AK R++ +       A +
Sbjct: 191 VELSSHQL--HYMREVRPYSSAFLNLADDHLEWHGSRQAYAAAKGRVYAD----TRVACV 244

Query: 247 Y--ADDAYSKEVMKRAH-NAGCRVLSVGYQGK-----FIHLKKVC-AIHNKQQVTISVEG 297
           Y  AD A +++ ++ A+   G R +  G          I    +C     +++ T ++E 
Sbjct: 245 YNRADRA-TEDALRHANVQDGARAIGFGLDAPGPSDLGIVDDILCDRAFLEERFTSALEL 303

Query: 298 KDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D L    L     V N L AA L  + G+  A+V + L++  +   R E +G   R 
Sbjct: 304 TTLDELRAVGLAAPHIVQNVLAAAALARSYGVSPAVVRQALQRFELDSHRIERIG--ERD 361

Query: 356 GRIYVDYAHTSN 367
           G  +VD +  +N
Sbjct: 362 GVAFVDDSKATN 373


>gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
 gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
          Length = 473

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R I+ G +FVA+   + DGH F+ QA  +GA A +V+      D +         
Sbjct: 26  VSIDTRTIEPGDLFVALAAAR-DGHEFVAQAFQKGASAALVNHVPDGMDAA-------KC 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVVD+    L    +    +    ++A+TG+ GK++V   ++Q     G
Sbjct: 78  LVVDDVLAALERLGTAARTRTQAKVIAITGSVGKTTVKDMLKQALSGQG 126


>gi|294787087|ref|ZP_06752341.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315226740|ref|ZP_07868528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
 gi|294485920|gb|EFG33554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315120872|gb|EFT84004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
          Length = 510

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 29/157 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171
            P   + +TGT+GK+S      +I Q +G  +  +G     +S  AQD     PS  YL 
Sbjct: 110 QPAVWVGITGTNGKTSTTEMTSEILQAAGYQAPAVGNIGVPVSQAAQD-----PSNRYLV 164

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          VE SS  L  H  D + L   + TNL  DH+D+H   + Y   K 
Sbjct: 165 ---------------VELSSFQL--HYTDDLALAGAAITNLADDHLDWHGGFENYAADKA 207

Query: 232 RLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCR 266
           +++  +    S  ++Y ADD       + A  A GCR
Sbjct: 208 KVYSGV----SQVLVYNADDPRVSAKAREARPAPGCR 240


>gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 21/157 (13%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR I  G +FVAI G + DGH ++ +  AQGA A +V              +  P +V
Sbjct: 34  TDSRQIVEGSVFVAIAGERVDGHDYVSKVGAQGAVAAIVDHEID--------GAGVPQIV 85

Query: 95  VDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           V++T   L   A      R   + P  ++ +TG+ GK++    ++ +          IGP
Sbjct: 86  VEDTVLALGALAKHNIERRRALETPFTVIGITGSVGKTTTKDLMKALLA-------HIGP 138

Query: 150 T-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           T + + SF  +  L   S    A+    ++  G  HV
Sbjct: 139 TIAPVGSFNNEIGLPLTSLKVHAETRFLVAEMGANHV 175


>gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 451

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  I  VS DSR I    +F+   G   DGH ++ QA+  GA A        L +  
Sbjct: 20  EFMDHGIKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQALKDGAGAAFYQKGEPLDE-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                + PI+ VD+T + L   A          ++AVTG++GK++    ++ + +
Sbjct: 78  ---NIDGPIIWVDDTLEALQHLAKAYLEFVNPQVIAVTGSNGKTTTKDMIESVLK 129


>gi|312794105|ref|YP_004027028.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181245|gb|ADQ41415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 37/231 (16%)

Query: 186 SVEASSHG------LDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++E SS        +   +L+ IK      G   N+  DH++ H T + Y  AKMR+FE 
Sbjct: 152 TIETSSENTIFVLEISSFQLETIKYFKPKVGCILNITPDHLNRHMTMENYIKAKMRIFEN 211

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQV 291
           +            D     V+   +N    ++ +      +  K  C   N     K  +
Sbjct: 212 I------------DEMGYTVLNYDNNITRDLIGLAKGNVIVFSKNKCQFKNMVFVEKDTI 259

Query: 292 TISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             + EGK  + +      +PGE  + NAL A    +  GI+   + + L+    V  R E
Sbjct: 260 YFTFEGKTQEIMKKDEIFIPGEHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           FV     G + Y D   T+   +   K +R   S  I++     G  D+G+
Sbjct: 320 FVA-EINGIKFYNDSKGTNT--DAAEKALRAFESPIILI----AGGYDKGE 363


>gi|207109934|ref|ZP_03244096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 143

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTP+ + L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+H+
Sbjct: 10  LTTPTLLELYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHK 69

Query: 222 TQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH 261
           + + Y +AK   F++     +   E+ A+    +A++  + K+AH
Sbjct: 70  SIENYRDAKNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAH 114


>gi|329928513|ref|ZP_08282381.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
 gi|328937772|gb|EGG34180.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 130/329 (39%), Gaps = 43/329 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ +V S+A S  +          I V+   +    L   R         +AV G  G
Sbjct: 62  QGADLVVYSTALSKDNVERVEAEKLNIPVLHRAQMLARLLNER-------KGVAVAGAHG 114

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +S +  + +  G+  +F IG    I +   + +                + +G  H
Sbjct: 115 KTTTSSMIALVMEECGVDPTFIIG--GEIMNVGTNAK----------------AGEG-EH 155

Query: 185 VSVEA-SSHG--LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  EA  S G  L  H   G+ L      N+  DH++ ++       A    F   +  +
Sbjct: 156 VVAEADESDGSFLQYHPWLGVVL------NIEADHLENYEGDFNRLKAAYVQFLSQIKAD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF 300
             A++ ADD   + ++    +  C V + G      +      + ++    T+   G + 
Sbjct: 210 GTAVVCADDNNIQAILP---DLKCNVTTYGIHADAEYTATNLVLGDRHVSFTMLHNGMEL 266

Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   +PG+  VYNA+     C+  GI    ++E + K +    RF+ +G  + G  + 
Sbjct: 267 GTVELSVPGKHNVYNAMATVICCLKSGISFEAIVEAIVKFNGAKRRFQVLG-EAEGILVI 325

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            DYAH    +E  +   +  T  RII VF
Sbjct: 326 DDYAHHPTEIEATISAAKA-TGKRIIAVF 353


>gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
 gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
          Length = 508

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 32/241 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ-----------GAEAIVVSSAYSLQDFSA 84
           DSR I+ G +F+A+ G + DGH FI QA+A            G  A+VV      QD +A
Sbjct: 33  DSRKIREGSLFLALPGARVDGHDFIDQAVAAGATMALAARDVGQPAVVVKP-LGKQDSNA 91

Query: 85  TIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              ++ P      V++   K        L  K   +++ VTG++GK+S    +  + +  
Sbjct: 92  DAFAHDPDGSGAAVLEALGKLARYVVDELK-KDQLHVVGVTGSAGKTSTKDMMATLLRTD 150

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G +    G  +            TP   YL   ++ +S++G+ HV+          H   
Sbjct: 151 GPTVAPKGSFNNEIGHPYTVLQCTPETKYL---VAEMSARGIGHVA----------HLAR 197

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMK 258
                 G+  N+G  H+    +++    AK  L E L   E    A++ ADD Y   +  
Sbjct: 198 IAPPTIGAVLNVGTAHLGEFGSREVIAQAKGELVEALPAAEQGGVAVLNADDDYVTGMAP 257

Query: 259 R 259
           R
Sbjct: 258 R 258


>gi|126726622|ref|ZP_01742462.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703951|gb|EBA03044.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
          Length = 463

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PGE  V NAL A  +   +G+  A +   LE    V  RF  VG    GG I +
Sbjct: 277 DCSLPMPGEHNVTNALAAVAVARHLGMKKAEIRTALENFGGVNRRFTRVG--EVGGAIVI 334

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVV 387
            DYAH    +   L+  R  T+GR+I V
Sbjct: 335 DDYAHHPVEIAAALRAARQSTTGRVIAV 362


>gi|325915634|ref|ZP_08177942.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538194|gb|EGD09882.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 477

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 126/331 (38%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDSDHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G++   +   LE    +  RF  +G  T S G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVEPQTIARALENFAGIGRRFNDLGEVTTSTGARVQV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|121606308|ref|YP_983637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595277|gb|ABM38716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 503

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 33/176 (18%)

Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153
           LSLFA  L        +   ++ +TGT+GK++V S   Q+ +R+G S   +  IGPT   
Sbjct: 103 LSLFAQALADLKEDLAYAPKVVGITGTNGKTTVTSLTGQLIERAGKSVAVAGNIGPTLLD 162

Query: 154 SSFAQ-DNRLTTPS---PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +   + D     PS   P +    LS     GVT+   + +                 + 
Sbjct: 163 TLTGKLDEHARDPSAALPEFWVLELSSFQLDGVTNFEPDVA-----------------TV 205

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIYADDAYSKEVMKRAH 261
            N+ +DH+D+H+T  AY  AK  ++      LL +  P ++ A  A  K    R++
Sbjct: 206 LNITQDHLDWHETLPAYAAAKSHVYGRSGLMLLNRNDPLVMTAVPALVKGKPGRSY 261


>gi|260220013|emb|CBA27126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 513

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 36/143 (25%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQ 158
           ++L A R    +   +LA+TGT+GK++V S   Q+   +G +   +  IGPT  + +  Q
Sbjct: 116 MALEALRTVRAYQPAVLAITGTNGKTTVTSLTGQLIAHAGKTVAVAGNIGPT-LLDTLTQ 174

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-------N 211
             +  T   +++                +E SS  LD          AGSF        N
Sbjct: 175 HLQADTLPDVWV----------------LELSSFQLDA---------AGSFEPTAAVVLN 209

Query: 212 LGRDHIDYHQTQQAYFNAKMRLF 234
           + +DH+D+H + QAY  AK R+F
Sbjct: 210 VTQDHLDWHGSMQAYAGAKARIF 232


>gi|91786971|ref|YP_547923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
 gi|118595672|sp|Q12EL7|MURD_POLSJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91696196|gb|ABE43025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
          Length = 587

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 28/138 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           +LA+TGT+GK++V S V Q+ QR+G +   +  IGPT                   L   
Sbjct: 209 VLAITGTNGKTTVTSLVGQLVQRAGKTVAVAGNIGPT------------------LLDTL 250

Query: 174 LSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++L +  +  V V E SS  L   +    +  A    N+ +DH+D+H    AY  AK R
Sbjct: 251 SAHLDADTLPQVWVLELSSFQLADAQ--DFEPTAAVVLNVTQDHLDWHGDMDAYVAAKAR 308

Query: 233 LFEE----LLPKESPAII 246
           +F      LL ++ P ++
Sbjct: 309 IFGRSTFMLLNRDDPRVM 326


>gi|83942754|ref|ZP_00955215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
 gi|83846847|gb|EAP84723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
          Length = 467

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 109/276 (39%), Gaps = 40/276 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+ ++ V  I + +G       PT    +  +      P+          
Sbjct: 122 IIAITGSNGKSTTSALVHHILKHAGR------PTQLAGNIGRGVLDIEPA---------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + V    +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 166 IDGEVVV---LELSSYQTDLAR--NLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLK-KVCAIHNKQQVTI 293
             P    A+I  D+   + +  +        RV+ V    K   L  +V A   K  ++ 
Sbjct: 221 GGPDR--AVIGVDEPEGRFLAGQLSEGAADDRVIRVSVDRKLTGLGWQVFA--RKGFLSE 276

Query: 294 SVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              GK     D   +  LPG     NA  A   C  +G    ++         +P R + 
Sbjct: 277 YRGGKQIGSIDLRSITGLPGAHNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQT 336

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTI 379
           VG    GG  +V+ +  +N    +      +NIR I
Sbjct: 337 VG--EAGGVRFVNDSKATNVDSAVKALAAFRNIRWI 370


>gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 474

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 32/229 (13%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++AG +F A  G   DGH +  +A+A GA A++ +    +           P LVV
Sbjct: 34  DSREVRAGSLFAAFAGEHVDGHDYAERAVAAGAVAVLAARPVGV-----------PALVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+ +  L   A  +  +   +++A+TG++GK+S    + Q+  R   + +  G       
Sbjct: 83  DDVQTALGALARAVVERLGTDVVALTGSAGKTSTKDLIAQVLDRHAPTVWTPG------- 135

Query: 156 FAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHR-LDGIKLIA-GSFTNL 212
            + +N +  P        L+ L +S    H+ +E  + G+   R L G+     G   N+
Sbjct: 136 -SLNNEIGLP--------LTALRASDETRHLVLEMGARGIGHIRYLTGLTPPRIGLVLNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259
           G  HI     ++    AK  L E L   E    A++ ADD   + +  R
Sbjct: 187 GTAHIGEFGGREQIAEAKGELVEALPAAEDGGVAVLNADDPLVRAMASR 235


>gi|71277817|ref|YP_271115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
 gi|81174947|sp|Q47VQ7|MURD_COLP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71143557|gb|AAZ24030.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
          Length = 471

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 143/349 (40%), Gaps = 58/349 (16%)

Query: 62  QAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           Q++   A+ I+ S    L  +  +A I  N   LV+ +   F  +  SR+    P  +LA
Sbjct: 70  QSLISSADIIITSPGIDLVSEGITALIPENC--LVIGDVELFCLVNNSRI---SPMKMLA 124

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG++GKS+V S +  + +  G+++   G             +  P    L +   Y +S
Sbjct: 125 VTGSNGKSTVVSLLASLAKAIGVNAALAG------------NIGEPILNLLHRENVY-NS 171

Query: 180 QGVTH---VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           Q       V VE SS  L+   L  +  IA S  NL  DH+D H+T   Y   K  ++  
Sbjct: 172 QLANQPDIVIVELSSFQLE--TLSSMHAIAASVLNLSDDHLDRHKTLANYQAIKQSIY-- 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQ 290
             P+   A++  +D  S  ++     A   ++S G          + AI NK      +Q
Sbjct: 228 --PQAKIAVVSREDQASNTLV-----AAQEIISFGLNKPEQDCFGLQAIDNKMVMMFGEQ 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             IS++        PL G     N + A  L  + G   + + E+L     +  R + V 
Sbjct: 281 ALISIDE------LPLAGMHNALNYMAALALGYSAGWSLSAMTENLAGFMGLAHRCQRVA 334

Query: 351 TNSRGGRIYVDYAHTSN------SLEMILKNIRTITSGRIIVVFGCGGD 393
           +       Y+ + + S       +L  I   + T+T G+  ++   GGD
Sbjct: 335 SED-----YIQWINDSKATNVGATLAAITGLVPTLT-GQNKLILIAGGD 377


>gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
 gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
          Length = 444

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 12/124 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           WR     EVS+D+R + AG +F+A+ G    G  F+  A  +GA A++V     +     
Sbjct: 24  WRAL---EVSTDTRTLTAGQLFIALRGEHFCGEDFLQTAQERGAVAVIVQEYREI----- 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +VV++T   L + A+    +    I+ +TGT+GK+S    + +I    G + 
Sbjct: 76  ----DIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGKTSTKEMLYRILSAQGKTL 131

Query: 145 FQIG 148
             +G
Sbjct: 132 ATVG 135


>gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
 gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
          Length = 470

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 148/385 (38%), Gaps = 65/385 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA----T 85
           I  V+ DSR  + G +FV + G   DGHL++ +A  +GA A +V      +  SA     
Sbjct: 32  IRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAFQRGASAALVQETVFSEAGSALLKHV 91

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQ--------QI 136
           +++   +LVV +T + L              I + VTG+SGK+S    ++        ++
Sbjct: 92  VQTRGALLVVTDTLEALQTLGEWYLSSLRVPIRIGVTGSSGKTSTKEMLRAVLSLHYSRV 151

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  + +IG   +I    ++  +              +   G+ HV           
Sbjct: 152 WATEGNLNSEIGVPLSILGIREEPEVV-------------ICEMGIDHVG---------- 188

Query: 197 HRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             +D +  I        T +G  H++   T++     K ++F       S   I  D+ +
Sbjct: 189 -EMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSS-FDDRSVGFIPEDEEF 246

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLP-- 307
                         VL  G++G F+          +   +  +EG    +     PL   
Sbjct: 247 ------------FHVLVEGWRGTFLPYGPATVEGFEGWESRGLEGVILSWKGLRIPLQGY 294

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  V NAL    L   +G+  ++V E L+    + GR E       GG  ++   + +N
Sbjct: 295 GEHMVRNALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGEL---KEIGGVWFLVDCYNAN 351

Query: 368 --SLEMILKNIRTITS-GRIIVVFG 389
             S+   L+ +R +    R IVV G
Sbjct: 352 PESMRASLEGVRGLKGIRRRIVVLG 376


>gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 455

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 124/327 (37%), Gaps = 41/327 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G +FV + G + DGH F+  AI+ GA A +    +  +        N
Sbjct: 24  ITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ VD+    +   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   ++F  +N +  P  I     L    +  +  + +     G   H  +         
Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GC 265
           T +G  HI++  T+    +AKM +  + L ++   I   D+   +E  K+        G 
Sbjct: 184 TMIGEAHIEFFGTRDKIADAKMEI-TDFLREDGEFIFNGDEPLLQERAKKLDQVKATFGF 242

Query: 266 R----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           R    V + G++    H             T ++   +  F  P+ G+  V NA+ A  +
Sbjct: 243 RDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAISV 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEF 348
               G     +   L        R E+
Sbjct: 291 GRHFGESDEEIASSLSNFKPTANRMEW 317


>gi|270159084|ref|ZP_06187740.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
 gi|269987423|gb|EEZ93678.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 132/333 (39%), Gaps = 44/333 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+       ++ A  +  +H    +AV GT G
Sbjct: 62  KGADVVVRSSAVEWNNPEIVAAREQMIPVIPRA----AMLAELMRFRHG---IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    GL  SF IG    ++S   + +L   SP ++ +A    +S     
Sbjct: 115 KTTTTSLVSSVLAEGGLDPSFVIG--GKLNSLGINAQLGQ-SPYFVVEADESDAS----- 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +K +    TN+  DH+  ++            F   LP    A
Sbjct: 167 --------------FLFLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPFYGSA 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDF 302
           ++  DD   ++++          L+ G+  +  H + +    N+   + T+ +  K +  
Sbjct: 213 VVCIDDPEVRKILPFIERP---TLTYGFTEE-AHYRAIDWTQNELISEFTV-IRPKSYSP 267

Query: 303 L---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGR 357
           L   F  PG   V NAL +  +   +G+D   ++  LEK   V  RF+ +G     +G  
Sbjct: 268 LKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEKGSA 327

Query: 358 IYV-DYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
           + V DY H    +   +   R +  + R++ VF
Sbjct: 328 LVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVF 360


>gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 451

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 149/361 (41%), Gaps = 41/361 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS+ I+ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 23  EIHGVCIDSKSIKEGNVFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141
             PI+ VD+T   L   A     +    ++ +TG++GK++V   +  I        +  G
Sbjct: 76  GMPIIFVDDTLFALQQLAQFYRKELNVKVIGITGSNGKTTVKDIISTILSTTHRVHKTKG 135

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + QIG   TI    +D         +L   +       + ++S+ A            
Sbjct: 136 NFNSQIGLPLTILEMKRDTE-------FLILEMGMSEKGQIRNLSIIAQPD--------- 179

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I +I    T +G  H++   +++    AK+ + + L  K+    +Y  D       K   
Sbjct: 180 IVII----TMIGHSHLETLGSKEEIAKAKLEIIDGL--KDEGLCLYNGDEPLLLKNKNLS 233

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +  C+     Y      L       ++  V   +      +  PL G+  + NA+V   +
Sbjct: 234 SITCKAFGEKYTN---DLFPTNVQLDEYGVHFKLNDSKIQYDVPLHGKHNILNAIVGIAV 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTIT 380
                + +  + + L ++++   RF+F+ T   G  I  D  + S +S++  ++ ++T+ 
Sbjct: 291 GQFYNVPTEKIQKALRQVNITHMRFQFL-TAKTGFTIINDAWNASPSSMKAAIETLQTLN 349

Query: 381 S 381
           +
Sbjct: 350 A 350


>gi|319424766|gb|ADV52840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella
           putrefaciens 200]
          Length = 439

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 43/268 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++             A    
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMLREAGMA------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           +  P       AL  LS      V +E SS  L+  H L+    +A +  N+  DH+D +
Sbjct: 144 IGVP-------ALDLLSENAEIFV-LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               AY  AK+RL+      +S +II+  DDA +        N+       G +      
Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K     H + ++    E         L G     N L A  L  A+G+D  ++ +     
Sbjct: 248 K---IYHGRSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTF 297

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +  R E VG   +GG  YV+ +  +N
Sbjct: 298 TGLSHRCEVVGI--KGGVTYVNDSKATN 323


>gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 463

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 146/384 (38%), Gaps = 78/384 (20%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR I  G +F+ + G + DGH FI  A   GA A           FS      
Sbjct: 26  LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGL 142
           TP L+V++  K     A     K   +++AVTG++GK+S       V S   +  +  G 
Sbjct: 75  TPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   T+     D                         + +E     + Q  +  I
Sbjct: 135 YNNEIGLPYTVLHMPDDTE----------------------KIVLE-----MGQDHMGDI 167

Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250
           +L++          T +G  H++Y  ++      KM++ + +    S  I+ A      D
Sbjct: 168 RLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGM---NSDGILIAPGDPIID 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
            Y  E           V+  G Q +      V  I  +K  +T +          PLPG+
Sbjct: 225 PYLPE--------NQMVIRFGNQQEI----DVTGIQEDKDSLTFTTNVLATPVSLPLPGK 272

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
           +   NA+VAA +   + +    ++  L+ + +   R E+    + G  I  D Y     +
Sbjct: 273 YNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKA-ANGADILSDVYNANPTA 331

Query: 369 LEMILK---NIRTITSGRIIVVFG 389
           + +IL+   NI     G+ I V  
Sbjct: 332 MRLILETFANIAKNPGGKKIAVLA 355


>gi|84686338|ref|ZP_01014232.1| UDP-N-acetylmuramate--L-alanine ligase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665521|gb|EAQ11997.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2654]
          Length = 467

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 133/327 (40%), Gaps = 40/327 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           + AE +V+SSA         I+   P L     R    +  + +  +    ++ +AV GT
Sbjct: 70  ENAEVVVISSA---------IKPGNPELDTARARGLPVVRRAEMLAELMRLKSNIAVAGT 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V ++    G+    I     I ++  + R+                 QG  
Sbjct: 121 HGKTTTTTLVAELLVAGGIDPTVIN-GGIIHAYGSNARM----------------GQGEW 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V VEA       +RL     I    TN+  +H+D+  T++A  +     F   +P    
Sbjct: 164 MV-VEADESDGTFNRLPATIAI---VTNIDPEHMDHWGTEEA-LHKGFYDFVSNIPFYGL 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDF 300
           A+   DDA  + ++ +  +   RV++ G+  +   ++ V   ++       +   +G+  
Sbjct: 219 AVCCTDDADVQTLVGKITDR--RVVTFGFNAQ-ADVRAVNLTYDAGIAHFDIVLPDGRID 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG+  V NAL A  +   +G+  A + E L K   V  RF  VG  +    I  
Sbjct: 276 GCTLPMPGDHNVSNALAAVAVSRHLGMKFAEIREALAKFGGVNRRFTRVGMWND-VPIID 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    +  +LK  R    GR+I V
Sbjct: 335 DYGHHPVEIAAVLKAARQAVKGRVIAV 361


>gi|71898202|ref|ZP_00680376.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71731941|gb|EAO33998.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 477

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 130/334 (38%), Gaps = 48/334 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I              +  A A + L +  
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL+ +  +    TN+  DH++ +    +        F + LP  
Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    E++ +A      V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDDPEVAELVGKARR---HVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
            R+  DY H    LE +    R      R++V F
Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|148273039|ref|YP_001222600.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|189028983|sp|A5CS50|MURC_CLAM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147830969|emb|CAN01914.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 476

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 16/183 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D++ + +A+ +A +R      EL+      +I +DD  ++ V  R      R
Sbjct: 188 TNVDADHLDHYGSHEAFDDAFVRFASAASELV------VISSDDPGARRVTARIEG---R 238

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V++ G      I +  +         T++ +G        +PG     NA  A  + + +
Sbjct: 239 VVTFGEDPAADIRITDIV-TDGPVAFTLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGL 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRI 384
           G+D    +  L        RFE      RG  +Y DYAH    +   L+  RT+   GRI
Sbjct: 298 GVDPDDAIAGLAGFSGTGRRFEL-HAEVRGVSVYDDYAHHPTEVRAALEAARTVVGEGRI 356

Query: 385 IVV 387
           I V
Sbjct: 357 IAV 359


>gi|52841980|ref|YP_095779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629091|gb|AAU27832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 455

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 29/304 (9%)

Query: 86  IRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           I+   P+L  V+++ + ++S     A  +  K+   ++AV GT GK++  S +  I  ++
Sbjct: 73  IKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQA 130

Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G++  F IG    +SS    +        ++ +A  Y S+                 H  
Sbjct: 131 GMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHYR 179

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             I ++     NL  DH D +    A    +       +PK   AI   DD    EV+ R
Sbjct: 180 PNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLSR 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              +  R+ ++   G+   + ++      Q   +   G   +  +PL G+F V N L A 
Sbjct: 235 GQFS--RIETLALSGEAEWVAELIDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAI 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 G++  +  + LE+   V  R E V +N  G  +Y D+AH   ++   +  ++  
Sbjct: 293 AATWNAGVNPEVAAKALEQFSPVKRRLE-VRSNRHGITVYDDFAHHPTAITKTIDALK-- 349

Query: 380 TSGR 383
            SGR
Sbjct: 350 RSGR 353


>gi|260910909|ref|ZP_05917551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634966|gb|EEX53014.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 443

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 128/313 (40%), Gaps = 45/313 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I                  ++L+ 
Sbjct: 104 MVCITGSNGKTTTTSLIYHIFKTAG---YNVGLGGNI-----------------GRSLAL 143

Query: 177 LSSQGVTHVSV-EASSHGL-DQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRL 233
             ++G     V E SS  L D +R    K       N+  DH+D Y+   Q Y +AKMR+
Sbjct: 144 QVAEGAHDWYVIELSSFQLEDMYRF---KAHIAVLLNITPDHLDRYNYRMQGYVDAKMRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + L P++   I + DD   K  +++ ++    V       +      + A     QVT+
Sbjct: 201 LQNLTPQDY-FIYWGDDPVVKPELQK-YDVSAHVCPFAENSE----TGMSAYVADGQVTL 254

Query: 294 SVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                  DF  P     LPG+  +YN+L AA    A GI  ++V + L     V  R E 
Sbjct: 255 PAP---LDFTMPQDRLSLPGKHNLYNSLAAALAARAAGIPQSVVEQGLSDFPGVEHRMER 311

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T      I    A   ++    L+ + T T    I++ G G D+     PI   +   
Sbjct: 312 VATMHGVNYINDSKATNVDACRYALEAMNTPT----ILIIG-GKDKGNDYEPIKELVKEK 366

Query: 409 LADIAIVTDDNPR 421
            A +  +  DN +
Sbjct: 367 CAGLVYLGADNTK 379


>gi|28199734|ref|NP_780048.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa
           Temecula1]
 gi|182682481|ref|YP_001830641.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M23]
 gi|32129758|sp|Q87AG0|MURC_XYLFT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620437|sp|B2I9B2|MURC_XYLF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28057855|gb|AAO29697.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Temecula1]
 gi|182632591|gb|ACB93367.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M23]
 gi|307578762|gb|ADN62731.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 477

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 130/334 (38%), Gaps = 48/334 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I              +  A A + L +  
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL+ +  +    TN+  DH++ +    +        F + LP  
Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    E++ +A      V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDDPEVAELVGKARR---HVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
            R+  DY H    LE +    R      R++V F
Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 477

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 26/221 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIRSNTPIL 93
           DSR ++ G +F A+ G + DGH F+ QA+A GA   V++   A  L D +      T ++
Sbjct: 31  DSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGAVIARPLAEVLPDGAP---PGTAVV 87

Query: 94  VVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            V +TR+ L+  A  +  +     ++ +TG+ GK++       +  R     F +    +
Sbjct: 88  EVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKEMAAAVLAR----RFAV--LKS 141

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQ-HRLDGI-KLIAGSF 209
             ++  D  L           L+ L  +    V+V E +  GL +  RL  I +   G  
Sbjct: 142 AGNYNTDVGLP----------LTLLDLEERHQVAVLEMAMRGLGEIARLAAIAEPDVGVV 191

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           T +   H+++  + +    AK  L E  LP++  AI+ A D
Sbjct: 192 TVVAESHLEFLGSLERVAQAKGELVEA-LPEDGVAILNAGD 231


>gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 461

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR + +G +FVA+ GN+ DGH F+ QA+++GA  ++V  +  L++    +      
Sbjct: 30  VALDSREVLSGDLFVALRGNRTDGHAFVGQALSRGARCLLVEIS-KLEEIRPGL-GGASC 87

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           L V +    L+  AS         ++ +TG+ GK++    +  +  R
Sbjct: 88  LAVPDPELALAEMASHWLKLVSPVVVGITGSVGKTTTREVILSLLGR 134


>gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 462

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 140/350 (40%), Gaps = 58/350 (16%)

Query: 13  ELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           ELIN L  +P + +     +  V +DSR +  G  FV + G   DGH F+ +A  +GA+A
Sbjct: 7   ELIN-LWGYPAEGKLSNNILGPVFTDSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAKA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VVS     +D +  I  N     VD+T +     A     +    ++AVTG+ GK++  
Sbjct: 66  AVVS-----KDSTVQIPENLICWRVDDTLQAYQQLALLHRQRLSIPVVAVTGSVGKTTTR 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +       G          T +S   +N +  P  I  A      S   +    +E +
Sbjct: 121 ELITACLTTLG--------AITSTSDNNNNDIGVPQTILQAD----FSDAALI---LEMA 165

Query: 191 SHGLDQHRLDGIKLIAGS------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             GL + R    +L   S       TN+G  HI    +++    AK  +   L P  +  
Sbjct: 166 MRGLGEIR----RLSCCSNPDIAVITNIGNAHIGRLGSRKNIAIAKCEITTCLNPSGT-V 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-------------QGKFIHLKKVCAIHNKQQV 291
           II A D     ++        R++ VG              +   + L  V  ++N    
Sbjct: 221 IIPAGDPLLDSILSEKWPG--RIIRVGLMPLGEEHTSASYIKKNAVDLLGVLDLNNN--- 275

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           ++SV+ +      PL G     N ++A    IA+ ++  + L ++  LHV
Sbjct: 276 SLSVDKEALT--LPLEGMHNAVNFMLA----IAVALELGISLSNMNNLHV 319


>gi|120597219|ref|YP_961793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. W3-18-1]
 gi|120557312|gb|ABM23239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           W3-18-1]
          Length = 439

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 43/268 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++             A    
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMLREAGMA------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           +  P       AL  LS      V +E SS  L+  H L+    +A +  N+  DH+D +
Sbjct: 144 IGVP-------ALDLLSENAEIFV-LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               AY  AK+RL+      +S +II+  DDA +        N+       G +      
Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K     H + ++    E         L G     N L A  L  A+G+D  ++ +     
Sbjct: 248 K---IYHGRSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTF 297

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +  R E VG   +GG  YV+ +  +N
Sbjct: 298 TGLSHRCEVVGI--KGGVTYVNDSKATN 323


>gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 460

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/328 (19%), Positives = 134/328 (40%), Gaps = 39/328 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 32  EIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------G 141
             PI+ VD+T   L   A     +    ++ +TG++GK++V   ++ I + +       G
Sbjct: 85  GVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKG 144

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + QIG   TI    +D         +L   +       + ++S  A            
Sbjct: 145 NFNSQIGLPLTILEMKRDTE-------FLILEMGMSEKGQIRNLSRIAQPD--------- 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +G+ H++   +++    AK+ + + L  +E+   +Y  D        +  
Sbjct: 189 ----VAVITMIGQSHLETLGSRKEIAKAKLEIIDGL--RENGLFLYNGDEPLLSRNNKTS 242

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +  C+      +     L       ++  V   +      +  PL G+  ++N +V   +
Sbjct: 243 SVNCKTFG---EKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAV 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                + +  + E L+++++   RF+F+
Sbjct: 300 GQFSKVPTEKIQEALQQINITQMRFQFL 327


>gi|189220191|ref|YP_001940831.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum
           V4]
 gi|189187049|gb|ACD84234.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum
           V4]
          Length = 483

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 177/440 (40%), Gaps = 51/440 (11%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA-----------TIRSNTPIL--VVDNTRKF 101
           D +++ P +     + I +   Y  Q+               I+   P L  V++    F
Sbjct: 42  DENVYPPLSTFLTQQGISIKEGYKAQNLPQDRAGTVVVVGNVIKRGNPELEAVLEKKYLF 101

Query: 102 LSL--FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQ 158
           LSL       + +  +NI+ V+GT GK++ +S +  I + + L+ SF IG      +F  
Sbjct: 102 LSLPEVLKFFFLQGKQNIV-VSGTHGKTTTSSLLAWIFESASLNPSFLIG--GLPKNFTS 158

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
             R T            Y   +G  + +          H L    +I     N+  DH D
Sbjct: 159 GCRYTRGD---------YWILEGDEYDTAYFDKRSKFLHYLPQTVII----NNIEYDHAD 205

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
                     A  RL + L+P+    II  DD     +++ A ++   V +VG+ GK   
Sbjct: 206 IFANLGEILLAFKRLIQ-LIPRNGHLIIPEDDP---NIVELAKSSLAPVYTVGF-GKEAE 260

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +    +++++     + G++F    P+PGE+ V NA +        GI    + +    
Sbjct: 261 FRITDVLYDQRGSRFRMLGEEF--FLPVPGEYNVRNAAMCLAAAKLYGIKPEQISQGFAS 318

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGD---- 393
              V  R E +G  + G ++  D+ H   ++   ++ +R    S R+  VF    +    
Sbjct: 319 FLGVKRRLEVLG-EACGIQVLDDFGHHPTAIYKTIQAVRQRYPSRRLWAVFEPRSNTTRR 377

Query: 394 ---RDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIRAEI-IHGIPGFIEKGNRIEA 448
              + +  + + G   + ++++A     +P     PE+I  E+   GIP F     + E 
Sbjct: 378 AVFQQELPQALAGADGVVISEVANKDGLSPSERLKPEQIAQELGKKGIPSFFCASPQ-EI 436

Query: 449 IRTAIEMLNKQDVLVVAGKG 468
           ++  +E+L   D++V    G
Sbjct: 437 LQKLLEVLRAGDIVVFFSNG 456


>gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
          Length = 455

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 124/327 (37%), Gaps = 41/327 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G +FV + G + DGH F+  AI+ GA A +    +  +        N
Sbjct: 24  ITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ VD+    +   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   ++F  +N +  P  I     L    +  +  + +     G   H  +         
Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GC 265
           T +G  HI++  T+    +AKM +  + L ++   I   D+   +E  K+        G 
Sbjct: 184 TMIGEAHIEFFGTRDKIADAKMEI-TDFLREDGEFIFNGDEPLLQERAKKLDQVKATFGF 242

Query: 266 R----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           R    V + G++    H             T ++   +  F  P+ G+  V NA+ A  +
Sbjct: 243 RDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAISV 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEF 348
               G     +   L        R E+
Sbjct: 291 GRHFGESDEEIASSLSNFKPTANRMEW 317


>gi|311742800|ref|ZP_07716609.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium
           marinum DSM 15272]
 gi|311314428|gb|EFQ84336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium
           marinum DSM 15272]
          Length = 495

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 30/200 (15%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPENILAVTGTSGKSSVA 130
           SA +L   S     +TPILV    R          A RL G+     L VTGT+GK++  
Sbjct: 93  SAPTLVVTSPGWSPSTPILVEAAGRGLPVWSEVELAWRLRGEDAAPWLGVTGTNGKTTTV 152

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +  GL S  +G                  P+  A     +  +    ++VE S
Sbjct: 153 QMLDAILRADGLRSAAVG--------------NVGRPVLEA----VMDPEPYDVLAVELS 194

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--A 248
           S+ L  H    +   A +  N+  DH+D+H +  AY  AK R+++        A +Y   
Sbjct: 195 SYQL--HWSSSLSCRASTVLNVAPDHLDWHGSHVAYAAAKGRIYQH----AQVACVYNVQ 248

Query: 249 DDAYSKEVMKRAHNAGCRVL 268
           D A  + V+      GCR +
Sbjct: 249 DPATEQLVVDAEVVEGCRAI 268


>gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
 gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
          Length = 432

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 159/365 (43%), Gaps = 38/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+  AG +F+A+ G   +G+ F  QA+  G A AIV  + Y+ ++       N  
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPEN-------NRH 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I++VDN  + L   A+    +    ++ +TGT+GK++    +  +  +S    +  G   
Sbjct: 69  IILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +   KA   L+      + + A+  G  +  +   +   G  TN
Sbjct: 128 -------NNHIGVPMTLLRLKAEHELAV-----IEMGANHPGEIKFLVHIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L  KE S   I  D+AY   +M  AH  G  ++  
Sbjct: 176 VGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIDHDNAY---LMDIAH--GLNLIPY 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326
           G +        V    N   +T   + GKD D       L GE+   NAL A  +    G
Sbjct: 231 GSEDSLYVNGHVTG--NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFG 288

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384
           +++  + E L        R +   T      + +D A+ +N   M+  L+N R +T  + 
Sbjct: 289 VEAGKIDEALAGYTPRNNRSQLKKTADN--TLIID-AYNANPTSMMAALQNFRNMTVKKK 345

Query: 385 IVVFG 389
           +++ G
Sbjct: 346 MLILG 350


>gi|254449024|ref|ZP_05062478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
 gi|198261418|gb|EDY85709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
          Length = 452

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 146/353 (41%), Gaps = 54/353 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +Q G +F A+ G + DGH F+ QA   GA A VV     L+D       + P  VV
Sbjct: 30  DTRALQKGQLFFALSGTQRDGHEFVAQAAEAGASAAVVER--YLEDV------DLPQCVV 81

Query: 96  DNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            + R  L   A+    +  E   +A+TG++GK++V   ++QI    G +       +T  
Sbjct: 82  SDARLALGHLAAWWRAQLNETRFVALTGSNGKTTVKEMLKQILSAVGST------CATQG 135

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTH----VSVEASSHGLDQHRLDGIKLIAGSFT 210
           +F  D  L    P+ L +        G  H    + + AS  G  ++     K       
Sbjct: 136 NFNNDLGL----PLTLLRV-------GREHQFAVLEMGASQFGEIEYLTQVAKPDVALVN 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G  H+D  +        K  ++  L  K   AII ADD ++     R+  A   V+S 
Sbjct: 185 NAGPAHLDGFKDISGVARGKGEIYNGLGEK-GIAIINADDIHAD--YWRSLCADKTVVSF 241

Query: 271 GY------QGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQVYNALVAA 319
           G       QG++    K         + + V G   D        PL G     NA+ AA
Sbjct: 242 GLENSADVQGQWSSQTKT--------LNLQVGGDKLDSGSVLIKLPLSGRHNARNAVAAA 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            + +A G+D   V + L K+  V GR   V   +RGG   +D  + +N   ++
Sbjct: 294 AVALAAGVDLDAVEKGLSKVRPVAGR--MVPMTARGGFYLIDDTYNANPASLM 344


>gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 478

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 49/300 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R +  G +FVA+  +  DGH F+  A+ +GA A +V+           +  + P+
Sbjct: 26  VSIDTRTLAPGDLFVAL-KDVRDGHDFVAMALEKGAGAALVTH------VPEGVAEDAPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-----VASFVQQICQRSGLSSF-- 145
           L+V++  K L    +    +    ++AVTG+ GK+S     +A F  Q    + + S+  
Sbjct: 79  LIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASVDSYNN 138

Query: 146 QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G   T++    D         +  P  I     L+ ++   V  V+  A+ H      
Sbjct: 139 HWGVPLTLARMPADTEYAVIEIGMNHPGEI---SPLAQMAKPDVAMVTTVAAVH------ 189

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                    +F N+    ++           K  +F+ L P    A+I AD  ++  +M 
Sbjct: 190 -------LEAFANVAEIAVE-----------KAAVFDGLQPG-GVAVINADIEHAAILMA 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +A +   R +  G  G    L  V    +   V    +G    F    PG     NAL A
Sbjct: 231 KAVDRRLREVEFGEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGA 290


>gi|303327350|ref|ZP_07357791.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862290|gb|EFL85223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
           sp. 3_1_syn3]
          Length = 434

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 107/279 (38%), Gaps = 64/279 (22%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E +LAVTGTSGK++ AS    + Q  G + F  G             + TP   Y+    
Sbjct: 119 EPVLAVTGTSGKTTTASLAAAMLQAQGYTVFLGG------------NIGTPLSEYV---- 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             LS +    + +E SS  L           AG   N+  +H+DYH+    Y  AK RLF
Sbjct: 163 --LSGRKADVLVLEISSFQLQA--CSTFCPRAGVLLNITPNHLDYHKDMAEYTEAKFRLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +   A++ AD                  L    QG  +  ++V    +++     
Sbjct: 219 -RCQDEGDLAVLGAD------------------LHDPAQGFNLRARRVWVRASER----- 254

Query: 295 VEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    FP   LPG    +N   A   C   G+  A     + +   +P R E V  
Sbjct: 255 ---------FPQSGLPGAHNKFNEEAAWQACRFFGVSEANAARAVARFKPLPHRLELV-- 303

Query: 352 NSRGGRIYVDYAH--TSNSLEMIL----KNIRTITSGRI 384
             R G +YV+ +   T +SL++ L    + +R +  G+ 
Sbjct: 304 RERCGVLYVNDSKCTTVSSLKVALQAFDRPLRLLCGGKF 342


>gi|163855003|ref|YP_001629301.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella petrii DSM
           12804]
 gi|189028975|sp|A9I4V6|MURC_BORPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163258731|emb|CAP41030.1| UDP-N-acetylmuramate-L-alanine ligase [Bordetella petrii]
          Length = 468

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 108/261 (41%), Gaps = 39/261 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S V  +     L++  + PT     F    RLT+      A A + L
Sbjct: 108 IAVAGTHGKTTTTSLVASV-----LAAGDLDPT-----FVIGGRLTS------AGANARL 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG  ++ VEA     D   L+ + ++A   TN+  DH+D +    A   +    F + 
Sbjct: 152 G-QG-EYIVVEADES--DASFLNLLPVMA-IVTNIDADHMDTYGHDVARLKSAFIEFTQR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP    A++ ADDA  +E+M        R ++        H++      +  ++  +V+ 
Sbjct: 207 LPFYGSAVLCADDANVREIMPFV----SRPITTYGLSPDAHVRGENVQADGTRMRFTVQR 262

Query: 298 KDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF---- 346
           +D     P       LPG   V NAL A  +   +G+    + + L     V  RF    
Sbjct: 263 QDRATALPPLAIELNLPGLHNVRNALAAVAVATELGVPDEAIAQALASFKGVGRRFTQTG 322

Query: 347 EFVGTNSRGGRIYV---DYAH 364
           EF    + GG  +    DY H
Sbjct: 323 EFPVPAAHGGGTFTLIDDYGH 343


>gi|71900694|ref|ZP_00682817.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71729515|gb|EAO31623.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 439

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 130/334 (38%), Gaps = 48/334 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I              +  A A + L +  
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL+ +  +    TN+  DH++ +    +        F + LP  
Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    EV + A  A   V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDD---PEVAELAGKARRHVMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
            R+  DY H    LE +    R      R++V F
Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|319440252|ref|ZP_07989408.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium variabile DSM 44702]
          Length = 505

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 34/235 (14%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF------------- 82
           DSR + AG +++A+ G + DGH F+  A+  GA  ++     +L +              
Sbjct: 34  DSRRVTAGSVYMALPGARVDGHDFVGPALEAGAALVMAGRPTALPELLCPAVEEEQGTQR 93

Query: 83  SATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           +A+   N P  + +     +S  A      L  ++   ++ VTG++GK+S    +  +  
Sbjct: 94  NASYLDNDPDGLGERVITAVSRLARHSTEVLVAENRLTVIGVTGSAGKTSTKDLLGAVFS 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA-KALSYLSSQGVTHVSVEASSHGLDQH 197
           R G +   I P  ++     +N +  P  +  A +   YL    V  +S     H     
Sbjct: 154 RDGET---IAPPGSL-----NNEIGHPYTVLKAGRTTKYL----VAEMSARGQGHIAHLA 201

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADD 250
           R+   ++  G   N+G  H+    +++    AK  L E L P      A++ ADD
Sbjct: 202 RIAPPRI--GVVLNVGTAHLGEFGSREGIAQAKGELVEALPPAAEGGVAVLNADD 254


>gi|289166080|ref|YP_003456218.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
 gi|288859253|emb|CBJ13187.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
          Length = 469

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 132/333 (39%), Gaps = 44/333 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+       ++ A  +  +H    +AV GT G
Sbjct: 73  KGADVVVRSSAVEWNNPEIVAAREQMIPVIPRA----AMLAELMRFRHG---IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    GL  SF IG    ++S   + +L   SP ++ +A    +S     
Sbjct: 126 KTTTTSLVSSVLAEGGLDPSFVIG--GKLNSLGINAQLGQ-SPYFVVEADESDAS----- 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +K +    TN+  DH+  ++            F   LP    A
Sbjct: 178 --------------FLFLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPFYGSA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDF 302
           ++  DD   ++++          L+ G+  +  H + +    N+   + T+ +  K +  
Sbjct: 224 VVCIDDPEVRKILPFIERP---TLTYGFTEE-AHYRAIDWTQNELISEFTV-IRPKSYSP 278

Query: 303 L---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGR 357
           L   F  PG   V NAL +  +   +G+D   ++  LEK   V  RF+ +G     +G  
Sbjct: 279 LKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEKGSA 338

Query: 358 IYV-DYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
           + V DY H    +   +   R +  + R++ VF
Sbjct: 339 LVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVF 371


>gi|297559874|ref|YP_003678848.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844322|gb|ADH66342.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 486

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 167/444 (37%), Gaps = 91/444 (20%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSG 125
           AE +VVSSA         IR + P LV    R  + L   A+          +AV+GT G
Sbjct: 75  AETLVVSSA---------IREDNPELVEARRRGLRVLPRAAALGALLLGREGVAVSGTHG 125

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  + Q  G    + IG     +    D                     G+  
Sbjct: 126 KTTTTSMVAVVLQHVGADPGYVIGGKLVTTGLGAD--------------------AGIGE 165

Query: 185 V-SVEASSHGLDQHRLDGIKLIAGS----FTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
           V +VEA          DG  L+        TN+  DH+D Y   ++ + N     F   +
Sbjct: 166 VIAVEADES-------DGSFLMLSPKIAVVTNVEADHLDNYSGIEEIHAN-----FASFV 213

Query: 239 PK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTI-SV 295
            + E   ++  DD  ++ V + A   G RVL+ G  +     + +V A     + TI + 
Sbjct: 214 DRVERTLVVGVDDPGARRVAELARERGKRVLTYGEAEDADYRVTRVRARGFTTEFTIRTA 273

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+  D    +PG   V NA  A  +   +G D  + +E +        RFE  G  + G
Sbjct: 274 NGEPVDGQLAVPGRHNVLNAAAAVAVADELGHDLEVAVEGIADFAGAARRFEPKG-EAGG 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI---------------TSGRIIVVFGCGGDRDQGKRP 400
             +Y  YAH    +E  L+  R                   GR++ +F         +  
Sbjct: 333 VAVYDSYAHHPTEIEADLRATRAALESLAEEAREDGREHAGGRVVALFQP---HLYSRTR 389

Query: 401 IMGK---IALDLADIAIVTDDNPRSEDPEK-IRAEIIHG---------IPGFIEKGNRIE 447
           I  +    AL LAD  +VT+     EDPE  + AE+I           +PG      R +
Sbjct: 390 IFAEEFAAALGLADEVVVTEVYAAREDPEPGVTAELITSRVAHDRVWYVPG------RDD 443

Query: 448 AIRTAIEMLNKQDVLVVAGKGHET 471
           A+    E+    D+++  G G  T
Sbjct: 444 AVLRVAELAGPGDIVLTMGAGDVT 467


>gi|300777756|ref|ZP_07087614.1| cyanophycin synthase (L-arginine-adding) [Chryseobacterium gleum
           ATCC 35910]
 gi|300503266|gb|EFK34406.1| cyanophycin synthase (L-arginine-adding) [Chryseobacterium gleum
           ATCC 35910]
          Length = 876

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 148/346 (42%), Gaps = 40/346 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+AVTGT+GK++    +  I + +G   +++G T++   + Q+  L+         A   
Sbjct: 484 IIAVTGTNGKTTTTRLISHIVKSNG---YRVGFTTSDGIYIQNTMLSKGDTTGPLSAEFI 540

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQAYFNAKMRL 233
           L    V    +E +  G+ +  L   +   G  TN+  DH+   D H  +        R+
Sbjct: 541 LKDPTVEFAVLETARGGILRSGLGFSQCDIGVLTNIEEDHLGMNDIHTLKD--LTRVKRV 598

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQ 289
             + + K   +++ AD+ YS +++    ++   + S+        KF    K+  ++ + 
Sbjct: 599 VLDSVKKSGWSVLNADNEYSMKIVNDL-DSNVAIFSMDENNPHIVKFAKEGKITCVYEEG 657

Query: 290 QVTISV--------EGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGID--SALVLEHLE 337
            VTI          + KDF         F + N L A  A      GI+  S  +   + 
Sbjct: 658 FVTIKKGDWKIRIGKAKDFPITMEGKARFMIENVLAASLASYLYGFGIEDISNSLRTFIP 717

Query: 338 KLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMI---LKNIRTITSGRIIVVFGCG 391
              + PGR   F+F     +  ++ +D+AH  +  E I   LKN+   ++ +I ++ G G
Sbjct: 718 SAQLTPGRLNVFKF-----KNFKVLIDFAHNPSGYEAIEDYLKNVE--STKKIGIISGVG 770

Query: 392 GDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGI 436
             RD   R   GKIA  + D I I  + + R    ++I   II G+
Sbjct: 771 DRRDNDIRE-CGKIAGRMFDHIIIRNEKHLRGRTEDEINGLIIEGM 815


>gi|19704788|ref|NP_604350.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|25008802|sp|Q8RDQ2|MURC_FUSNN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|19715125|gb|AAL95649.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 468

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL 268
           TN+  DH+D H       N K    + +   +  AII  D    KEV+ R          
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIKFICHTQKEAIICLDCENLKEVVTRLPEEKTVTTY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG 326
           S+  +   I  K +  I +++ +      K+   +F   +PGE  + N+L    L    G
Sbjct: 238 SIKDESANIFAKNI-KIEDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVIYLAFKFG 296

Query: 327 IDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +    + E L K      R++ +         G  ++  RI  DYAH    ++  LK I+
Sbjct: 297 VSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKRVRIVDDYAHHPTEIKATLKAIK 356

Query: 378 TITSGRIIVVF 388
           +I + R++ +F
Sbjct: 357 SIDTSRLVAIF 367


>gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 447

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 35/236 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           +S+D+R I+   +F A+ G   +G+ F  QA+  GA  A++    Y L+D          
Sbjct: 34  ISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEYHLKD--------KT 85

Query: 92  ILVVDNTRKFLSL-FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ILV D  +    L  A R Y   P  +LA+TG++GK++    +  +  +      +   T
Sbjct: 86  ILVEDVLQTLQDLAHAHRKYLDIP--VLALTGSNGKTTTKELINSVLSK------KFKTT 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA--- 206
           +T  +   +N +  P        L+ LS    T +  VE  ++ + +  +  +  IA   
Sbjct: 138 ATQGNL--NNHIGVP--------LTLLSMNKNTEMGIVEMGANHIGE--IADLTAIAAPD 185

Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            G  TN G+ H++   + Q     K  L++ L+  +    +  DD    E +   H
Sbjct: 186 FGYITNFGKAHLEGFGSVQGVIKGKSELYDYLIAHKGTLFLNLDDPIQAEKLGSTH 241


>gi|254509149|ref|ZP_05121249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
 gi|219547946|gb|EED24971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
          Length = 441

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 47/257 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL   ++G    I   A D  L   + +Y+ +  S+
Sbjct: 112 VIAITGSNGKSTVTDLTGVVAKAAGL---KVGVGGNIGVPALD-LLAQDADLYVLELSSF 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E +S          + L A +F NL  DH+D ++  + Y  AK+R+F+ 
Sbjct: 168 ---------QLETTSS---------LSLKAAAFLNLSEDHMDRYEGMEGYRQAKLRIFDH 209

Query: 237 LLPKESPAIIYADDAYS------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                   I+ ADD  +      K++++ + N          QG+    +    I     
Sbjct: 210 ----ADACIVNADDKATYPDVGDKKLIEFSLNGSADYHLAELQGQEFLFQGSAPIMPSSD 265

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +T             L G   + NALV   L   + +D +L L+ L+    +  R + V 
Sbjct: 266 LT-------------LVGRHNIANALVVLALLSQVDVDLSLGLDALKSYSGLTHRCQVVA 312

Query: 351 TNSRGGRIYVDYAHTSN 367
            N   G  +V+ +  +N
Sbjct: 313 DNQ--GIKWVNDSKATN 327


>gi|58038641|ref|YP_190605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
           oxydans 621H]
 gi|58001055|gb|AAW59949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconobacter
           oxydans 621H]
          Length = 476

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 22/154 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AVTGT+GKS+  + +  +   +G      G   T S                  AL  
Sbjct: 142 FIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGTAS-----------------LALPL 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L   GV    +E SS+ L+  RLD     A    NL  DH+D H     Y  AK  +F+ 
Sbjct: 185 LPDDGV--YVIEMSSYMLE--RLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDN 240

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           + P +  A+I  DD + + +  +  + G +V+ +
Sbjct: 241 MGPDDL-AVIGMDDDWCRAIASQVASRGVQVVEL 273


>gi|54294640|ref|YP_127055.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
 gi|53754472|emb|CAH15956.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
          Length = 455

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 29/304 (9%)

Query: 86  IRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           I+   P+L  V+++ + ++S     A  +  K+   ++AV GT GK++  S +  I  ++
Sbjct: 73  IKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQA 130

Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G++  F IG    +SS    +        ++ +A  Y S+                 H  
Sbjct: 131 GMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHYR 179

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             I ++     NL  DH D +    A    +       +PK   AI   DD    EV+ R
Sbjct: 180 PNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLSR 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              +  R+ ++   G+   + ++      Q   +   G   +  +PL G+F V N L A 
Sbjct: 235 GQFS--RIETLALSGEAEWVAELIDDSGSQFNILHNGGVVAEVSWPLIGQFNVENGLAAI 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 G++  +  + LE+   V  R E V +N  G  +Y D+AH   ++   +  ++  
Sbjct: 293 AATWNAGVNPMVAAKALEQFSPVKRRLE-VRSNRHGITVYDDFAHHPTAITKTIDALK-- 349

Query: 380 TSGR 383
            SGR
Sbjct: 350 RSGR 353


>gi|99035085|ref|ZP_01314874.1| hypothetical protein Wendoof_01000291 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 507

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 128/340 (37%), Gaps = 48/340 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTG 122
           G  A  +S A  +   SA    N  ++   N  K +     + A  + GK+   ++AV+G
Sbjct: 86  GHNANNISQAQIVVHSSAIESDNVELIAAKNNNKTVLHRSDILAEIMKGKY---VIAVSG 142

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++  + +  I   SG     I  T T+       +    S   L  + ++L     
Sbjct: 143 SSGKTTTTAMIASIFDHSG-----IDATVTVGGILNSYK----SNFKLGGSDTFL----- 188

Query: 183 THVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +EA     D+     +K+ A     T++  DHIDY+ T     NA  +        
Sbjct: 189 ----IEA-----DESDGTMLKIPAKIAVITSINNDHIDYYGTFDNIKNAFSQFVNNAGSA 239

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---------------KKVCAI 285
             P  +  D      +     N   R  ++      I                 K  C  
Sbjct: 240 VLPDSVDIDYDAGNSITFGFENGSIRASNIKQHANSIEFDVLNNWIPALRAGMTKGKCTE 299

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            + Q VT+         L    G  +V NAL A  + I +GI  A + + L +   V  R
Sbjct: 300 MSSQCVTLGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           F  +  + +G ++  DYAH  N +   L   R+IT G++I
Sbjct: 360 FSLIA-DIKGVKLIEDYAHHPNEIYATLTAARSITKGKVI 398


>gi|62900456|sp|Q5FUJ7|MURD_GLUOX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 448

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 22/154 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AVTGT+GKS+  + +  +   +G      G   T S                  AL  
Sbjct: 114 FIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGTAS-----------------LALPL 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L   GV    +E SS+ L+  RLD     A    NL  DH+D H     Y  AK  +F+ 
Sbjct: 157 LPDDGV--YVIEMSSYMLE--RLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDN 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           + P +  A+I  DD + + +  +  + G +V+ +
Sbjct: 213 MGPDDL-AVIGMDDDWCRAIASQVASRGVQVVEL 245


>gi|149927250|ref|ZP_01915506.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
 gi|149823964|gb|EDM83187.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
          Length = 1024

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 141/316 (44%), Gaps = 34/316 (10%)

Query: 85  TIRSNTPILVVDNTRK---FLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRS 140
           T+ +   +LVV +  +   F+   A RL+ GK    ++ VTG++GK++  + ++     S
Sbjct: 641 TLPTTAGVLVVKSIHQAVIFMGRHARRLFTGK----LVGVTGSAGKTTTVAMLKHAFNDS 696

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G     I  T          R     P  +A  L+ + S G  ++ +E +   + +  + 
Sbjct: 697 G----HISAT----------RGNANLPYGVAWNLASMES-GTDYMILEIAIGRMKESAVL 741

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               +A   TN+G  H+++H+T +     K R+F  L+     A+I  D      ++  A
Sbjct: 742 ARPHVA-VVTNIGSAHLEFHKTIETIAKRKARIFWGLVDG-GIAVINRDTECFDLILHEA 799

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +     V++ G   +     ++  I++K ++V I VEG+ + F   +  +  + N L  A
Sbjct: 800 NKVKAVVITYGEHSE--SAVRLININDKDKEVEIQVEGRIYIFGSKVLSKHHISNMLCTA 857

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEM--ILKNI 376
            + IA+ +     L+ L     +PGR E       G  I V D ++ +N L M   ++  
Sbjct: 858 AVAIALDLPIDKTLKKLINFSPLPGRGEHFEAVIDGKTILVIDESYNANPLSMQAAIQGA 917

Query: 377 RTIT---SGRIIVVFG 389
           RT     S ++I+V G
Sbjct: 918 RTTARNRSSKLILVLG 933


>gi|85714977|ref|ZP_01045962.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
 gi|85698174|gb|EAQ36046.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
          Length = 467

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+D+ +T  A  +A  R F E +P    A++  D    + ++ R  +       
Sbjct: 181 TNVDAEHLDHFKTFDAVQDA-FRSFVENVPFYGFAVMCIDHPVVQTMVGRIEDRRIITYG 239

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R++ +   G   H K V    N++        +  D + P+PG     NA  A
Sbjct: 240 QNPQADVRLVDLAPNGGGSHFKVV--FRNRKT---DAAHEIPDLVLPMPGPHNALNATAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +GI  A +   L     V  RF   G   +G  I  DY H    +  +LK  R 
Sbjct: 295 IAVAHELGIPDATIRNALAAFGGVKRRFTKTG-EWKGVTIIDDYGHHPVEIAAVLKAARE 353

Query: 379 ITSGRIIVV 387
            T+GR++ V
Sbjct: 354 STAGRVVAV 362


>gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
 gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
          Length = 457

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/385 (19%), Positives = 152/385 (39%), Gaps = 56/385 (14%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N ++++P    +  + +   DSR I AG +FV + G + DGH FI  A   GA   VV+ 
Sbjct: 16  NDVTVYP----DSPLVKAEFDSRLITAGDLFVPLKGAR-DGHDFIETAFENGA---VVT- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S    +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 67  ------LSEKKVANQPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194
           +      ++++   T        +N +  P  +           +G   + +E    H  
Sbjct: 121 LLS----TTYKTYKTQG----NYNNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 165

Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADD 250
           D H L  +     +   L G  H+ + + +      KM++ + + P     +PA    +D
Sbjct: 166 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMRPGSLLLAPADSIVED 225

Query: 251 --AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                K+V++    A   +  +              +  K  +T      +     P+ G
Sbjct: 226 YLPTDKKVVRFGQGAELEITDL--------------VERKDSLTFKANFLEQTLDLPVTG 271

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           ++   NA++A+ + +  G+    + +  + L +   R E+    + G  I  D Y     
Sbjct: 272 KYNATNAMIASYVALQEGVSEEQIRQAFQNLDLTRNRTEWKKA-ANGADILSDVYNANPT 330

Query: 368 SLEMILKNIRTITS---GRIIVVFG 389
           ++++IL+    I +   G+ I V  
Sbjct: 331 AMKLILETFSAIPANEGGKKIAVLA 355


>gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxidans DMS010]
 gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxydans DMS010]
          Length = 451

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 16/143 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + K++    D+R IQAG +F+A+ G   DGH ++ QA   GA A +VS    +QD + 
Sbjct: 20  YADIKVSGAVVDTRKIQAGDLFIALKGEHVDGHDYLAQAREAGAAAALVS---EIQDDA- 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P LVV + RK  +  A     +    ++A+TG++GK+SV   V  + ++ G  +
Sbjct: 76  -----LPQLVVADVRKAFAHIARAWQQQCKARVVAITGSNGKTSVKEMVTTMLKQVGSVT 130

Query: 145 F-------QIGPTSTISSFAQDN 160
                   ++G   T+S   QD+
Sbjct: 131 ATQGNLNNELGVPLTLSCLNQDD 153


>gi|188585042|ref|YP_001916587.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349729|gb|ACB83999.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 465

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH++++           R F E +       IY++  Y   +++   +  C+   
Sbjct: 179 TNIEADHLEHYNGSFDQLLKSYRQFIENIDDSGKVFIYSECEYHDYLLE-GMSKNCKTFG 237

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 F   +      NK     ++E      F     +PGE  + NAL AA + + + 
Sbjct: 238 FSQDADF---RATDLKLNKGTTEFTIESDLADSFKVELMVPGEHNILNALAAASVALDLK 294

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I    +   L+K      RF  +G   +G  I  DYAH    ++  LK  +  +  ++I 
Sbjct: 295 ISPTAIKRALQKFTGAKRRFMEIG-QLQGATIVDDYAHHPTEIKATLKTAQEQSDNKVIA 353

Query: 387 VF 388
           +F
Sbjct: 354 IF 355


>gi|148359297|ref|YP_001250504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
 gi|148281070|gb|ABQ55158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
          Length = 441

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 124/311 (39%), Gaps = 41/311 (13%)

Query: 85  TIRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            I+   P+L  V+++ + ++S     A  +  K+   ++AV GT GK++  S +  I  +
Sbjct: 58  AIKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQ 115

Query: 140 SGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G++  F IG    +SS    +        ++ +A  Y S+                 H 
Sbjct: 116 AGMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHY 164

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              I ++     NL  DH D +    A    +       +PK   AI   DD    EV+ 
Sbjct: 165 RPNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLS 219

Query: 259 RAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           R   +    L++    +++         +   +HN   V         +  +PL G+F V
Sbjct: 220 RGQFSRIETLALSGDAEWVAELIDDSGSQFKILHNGVMVA--------EVSWPLIGQFNV 271

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A       G++  +  + LE+   V  R E V +N  G  +Y D+AH   ++   
Sbjct: 272 ENGLAAIAATWNAGVNPVVAAKALEQFSPVKRRLE-VRSNRHGVTVYDDFAHHPTAITKT 330

Query: 373 LKNIRTITSGR 383
           +  ++   SGR
Sbjct: 331 IDALK--RSGR 339


>gi|86147593|ref|ZP_01065903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
 gi|85834632|gb|EAQ52780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
          Length = 452

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 35/284 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G +  F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----K 201

Query: 232 RLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIH 286
           R F  L+   P         +D   ++V+ R    GC     S G QG +   KK+  + 
Sbjct: 202 RQFHHLVRTVPGNGRIFSPKEDTAIQDVLSR----GCWSETESSGEQGDW-DAKKL--VK 254

Query: 287 NKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +  Q  +  +G+    + + L G+  V NAL+A      +G+   L  E L K      R
Sbjct: 255 DGSQFGVYFQGECVGTVDWNLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRR 314

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            EF G  + G  +Y D+AH   ++E+ L  +R  + + +II V 
Sbjct: 315 LEFKGEVA-GVSVYDDFAHHPTAIELTLSGLRNKVDTKKIIAVL 357


>gi|153813506|ref|ZP_01966174.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
 gi|149830377|gb|EDM85469.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
          Length = 459

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 136/366 (37%), Gaps = 44/366 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAV 120
           I  G  A  +S +  +  ++A I  + P       +    L  ++L G+   N    +AV
Sbjct: 57  IYYGQRASNISDSVQVVVYTAAIHPDNPEFACAKEKGIPMLTRAQLLGQIMRNYDTSIAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYL 177
            GT GK++  S +  I  +      +  PT ++         N     S  +L +A  Y 
Sbjct: 117 AGTHGKTTTTSMLSHILLKG-----ECDPTISVGGILPAIGGNIRVGQSETFLTEACEYT 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S      ++                   G   N+  DH+D+ +          R F EL
Sbjct: 172 NSFLSFFPTI-------------------GIILNIDADHLDFFKDIDD-IRHSFRTFAEL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-- 295
           LP E   II AD    + + +   N  C+V++ G +    +             T  V  
Sbjct: 212 LPAEGALIINADTPKYEMITE---NLPCKVITYGLEHDAEYTATDITYDELGHATFHVLH 268

Query: 296 EGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+D       +PG   V NAL +      + + + ++ + L+       RF++ G   +
Sbjct: 269 NGEDLGTCSLKVPGIHNVSNALASIAAGQLLDLSTEVIFDGLKDFGGTDRRFQYKG---K 325

Query: 355 GGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLAD 411
            G + +  DYAH    +E  L   +     +I  VF      R +   P   K AL LAD
Sbjct: 326 IGDVTIIDDYAHHPTEIEATLHAAKNYPHKKIWCVFQPHTYTRTKALLPEFAK-ALTLAD 384

Query: 412 IAIVTD 417
             ++ D
Sbjct: 385 HVVLAD 390


>gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 448

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 157/369 (42%), Gaps = 47/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++  S +S++I    +F+ + G + DGH F+ +A+  GA + +  S   +++        
Sbjct: 25  VSSFSLNSKNISKNTLFIPLKGTRFDGHDFVEEALQNGAISFI--SHKEIENVRV----- 77

Query: 90  TPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P + V +T   L   AS +  K     ++ VTG+ GK+S   ++  +            
Sbjct: 78  -PYVKVKDTLAALQGLASYVRDKLKGLTVIGVTGSVGKTSTKEYIFNVL----------- 125

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLI 205
            +    +F     L      ++    S L+    T V+V     S+  +  +L  I K  
Sbjct: 126 -SCKYKTFKNQGNLNN----HIGLPFSILNMPEDTQVAVFEMGMSNFGEISKLSQIAKPN 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHN 262
            G  TN+G  HI+  +++   F AK  + ++ +P+    II  D+      K+ +KR   
Sbjct: 181 IGVITNIGVAHIENLKSRYNIFLAKSEI-QDGMPESGILIINNDNDILNLHKKELKR--- 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +V+++G + +     +    H   Q   S E   + +         +YN+L A  + 
Sbjct: 237 ---KVVTIGIENESNFRAQNVQRH---QNGFSFEVGGYTYFIKSFNFHDIYNSLFAIAIG 290

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GID  LV E + +   +  RFE +    +G    VD  + +++  M L  I +I   
Sbjct: 291 TILGIDRQLVKEAIRQKERLKRRFEVI---KKGSITIVDDTYNASTHSM-LSAIDSICEF 346

Query: 382 -GRIIVVFG 389
            G+ I+V G
Sbjct: 347 DGKKILVLG 355


>gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
          Length = 243

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 14/138 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 23  EIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141
             PI+ VDNT   L   A     +    ++ +TG++GK++V   ++ I        +  G
Sbjct: 76  GVPIIFVDNTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKTKG 135

Query: 142 LSSFQIGPTSTISSFAQD 159
             + QIG   TI    +D
Sbjct: 136 NFNSQIGLPLTILEMKRD 153


>gi|34763166|ref|ZP_00144133.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887164|gb|EAA24268.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 468

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 14/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-L 268
           TN+  DH+D H       N K    E +   +  AII  D    KE + R       +  
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIEFISHTQKEAIICMDCENLKEAITRLPKGKSVITY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+  +   I  K +     K    + +  +   +F   +PGE  + N+L    L +  G+
Sbjct: 238 SIKDENASIFAKNIRITDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVIYLALKFGV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + E L K      R++ +         G  ++  RI  DYAH    ++  LK I++
Sbjct: 298 SKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKKVRIIDDYAHHPTEIKATLKAIKS 357

Query: 379 ITSGRIIVVF 388
           I + R++ +F
Sbjct: 358 IDTSRLVAIF 367


>gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 448

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 159/371 (42%), Gaps = 51/371 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S +S++I    +F+ + G++ DGH F+ +A+  GA + +     S +DF       
Sbjct: 25  VKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEALQNGAISFI-----SQKDFEDI---K 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P + V ++   L+L +   Y +   N   ++ VTG+ GK+S   ++  +  R       
Sbjct: 77  VPYIKVQDS--LLALQSLACYARRKLNDLKVVGVTGSVGKTSTKEYIFNVLSRK------ 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-K 203
                   +F            ++   +S L+    T V+V     S+  +  +L  I K
Sbjct: 129 ------YKAFKNQGNFNN----HIGLPISILNMPDDTQVAVFEMGMSNFGEISKLSQIAK 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRA 260
              G  TN+G  HI+  +++   F AK  + ++ +P+    II +D+      K+ +KR 
Sbjct: 179 PDIGIITNIGVAHIENLKSRYNIFLAKSEI-QDGMPESGILIINSDNDILNLHKKELKR- 236

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                +V+++G + +     +    H   Q   S E   + +         +YN+L A  
Sbjct: 237 -----KVVTIGIENESNFRAQNVQRH---QNGFSFEVGGYTYFIESFNFHDIYNSLFAIA 288

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   + +D  LV E + +   +  RFE +    +G    VD  + +++  M L  I +I 
Sbjct: 289 VGTILEVDRQLVKEAIRQKERLKRRFEVI---KKGSITVVDDTYNASTHSM-LSAIDSIC 344

Query: 381 --SGRIIVVFG 389
              G+ I+V G
Sbjct: 345 EFEGKKILVLG 355


>gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9768]
 gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/11074]
 gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9301]
          Length = 450

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 24/149 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80

Query: 88  SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
               +L V + R+ L   A R      YG+    ++ +TG+ GK++  +   Q+   S +
Sbjct: 81  ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNCANQLL--SSV 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               + P S       +++LT P  + +A
Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152


>gi|296129441|ref|YP_003636691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas
           flavigena DSM 20109]
 gi|296021256|gb|ADG74492.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas
           flavigena DSM 20109]
          Length = 490

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 29/161 (18%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   LAVTGT+GK++    ++ I + +G  +  +G   T              P+ LA  
Sbjct: 106 PAPWLAVTGTNGKTTTVGMLESILRAAGRRTLAVGNVGT--------------PVVLAAV 151

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              L       ++VE SS  L  H    +   A +  N+  DH+D+H +  AY   K R+
Sbjct: 152 DPALDV-----LAVELSSFQL--HHTVSMSAQAAAVLNVAPDHLDWHGSLAAYAADKGRI 204

Query: 234 FEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY 272
           +E    +   A +Y A D  +++++++A    GC  ++VG+
Sbjct: 205 YE----RAQVACVYDASDTTTEDLVRQADVVDGC--VAVGF 239


>gi|149278412|ref|ZP_01884549.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
 gi|149230782|gb|EDM36164.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
          Length = 824

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 126/297 (42%), Gaps = 21/297 (7%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K DGH +IP A A G    V+S    L D  A   ++   L+VD+  K L   A     +
Sbjct: 52  KRDGHEYIPDAYAHGIRNFVISRTEFLADQKAGDYADANFLLVDDVLKALQELAVFNRRQ 111

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +   ++A+TG++GK+ V  ++ Q+      + F I    +  SF  ++++  P  ++   
Sbjct: 112 YDTPVMAITGSNGKTIVKEWLYQLLA----ADFNI--VRSPRSF--NSQIGVPLSVW--- 160

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IAGSFTNLGRDHIDYHQTQQAYFNAKM 231
               L+ +    +     S G +   L  I     G  TN+G  H +   +Q+     K+
Sbjct: 161 ---DLTEEHTLAIFEAGISKGEEMDALAAIIYPTVGILTNVGEAHAEGFSSQKEKLLEKL 217

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +LF     KE+   IY+ + Y++ + K+      +      +   + +  +  I +K  +
Sbjct: 218 KLF-----KEADVFIYSPE-YTQGIPKKDLPGNTKFSWSLTESADLQISFIEPIDDKNYI 271

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +G++ + L P      V N ++     +++G         LEKL+ V  R E 
Sbjct: 272 RAIFKGEEIECLIPFSDRASVENGIICWATLLSMGYSPEDADSRLEKLNRVGMRLEL 328


>gi|330813732|ref|YP_004357971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486827|gb|AEA81232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 428

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 38/242 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TGT+GKS+    +    +    ++F +G                    Y   ALSY
Sbjct: 110 IIAITGTNGKSTFCKLLYHAIKGKDKNTFLLGN-------------------YGKPALSY 150

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +S+ + ++ + E SS+ ++  +   +K  A +  N+  DH++ H+T   Y N K+++F+
Sbjct: 151 -NSKSIKNIYILELSSYQIEYSKF--LKFHACAVLNISPDHLERHKTFSNYINIKLKIFD 207

Query: 236 ELLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKK--------VCAIH 286
            LLP      +  + +Y+  +  K+       + +   Q KF+ LK+        V A+ 
Sbjct: 208 HLLP-GGKGFVNENFSYNNRIQPKKNVRKVSNIKTSNIQNKFL-LKENFLPSVSIVFAVL 265

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL---CIAIGIDSA-LVLEHLEKLHVV 342
              +++  +  K F+   PLP   ++   +          A   DSA   L+H + ++ +
Sbjct: 266 KFLKISNKLIIKSFNSFVPLPHRQELIKKIKNISFINDSKATNFDSANFSLKHYQNIYWI 325

Query: 343 PG 344
            G
Sbjct: 326 AG 327


>gi|291535568|emb|CBL08680.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           M50/1]
          Length = 459

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 125/339 (36%), Gaps = 48/339 (14%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAV 120
           I  G +A  ++    L  ++A IR + P       R    L  + L G+   +  N +AV
Sbjct: 57  IFYGQKAENLTDGIDLIVYTAAIREDNPEYAAAKERSIPMLSRAELLGQIMDNYNNSIAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYL 177
            GT GK++  S + QI     L + +  PT ++       + N     S I+L++A  Y 
Sbjct: 117 AGTHGKTTTTSMISQI-----LLAAKADPTISVGGILKAIEGNIKVGKSDIFLSEACEYT 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S    H     S                    N+  +H+D+ +  Q   N+  R F   
Sbjct: 172 NS--FLHFYPRYSV-----------------ILNVEAEHLDFFKDIQDIRNS-FRKFAGN 211

Query: 238 LPKESPAIIYAD-DAYSK-------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             K+   II  + + Y++       +V+    N  C      Y       K  CA     
Sbjct: 212 TKKDGAIIINGEIENYTELTSGLDPQVITFGLNDSCDY----YPSDITFDKTACASFTAM 267

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                V     D    +PG   V NAL A  L + +GI +  +L  L        RF++ 
Sbjct: 268 HHGTPV----MDVKLHVPGMHNVSNALAAIALSLDLGISTDAILAGLSAFGGADRRFQYK 323

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           G    G  I  DYAH    +   L   +     R+++ F
Sbjct: 324 GC-VDGVTIIDDYAHHPTEIRATLTAAKNYPHKRLVLAF 361


>gi|258542968|ref|YP_003188401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634046|dbj|BAI00022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637106|dbj|BAI03075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640158|dbj|BAI06120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643215|dbj|BAI09170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646270|dbj|BAI12218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649323|dbj|BAI15264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652309|dbj|BAI18243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655367|dbj|BAI21294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 471

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 35/169 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGL---SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            + +TGT+GKS+  + +  I   + L   +   +GP                     A A
Sbjct: 126 FVGITGTNGKSTTTTLLAHILAEAKLPVAAGGNLGPA--------------------ALA 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L +LS  GV    +E SS+ L+  RLD +   A    NL  DH+D H     Y  AK R+
Sbjct: 166 LPFLSDNGV--YVLEMSSYMLE--RLDTLHFDAACLLNLTPDHLDRHAGMDGYAQAKKRV 221

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRVLS-----VGYQGK 275
           F     K+  A+I  DD + + +     +  A C  +S       Y GK
Sbjct: 222 FTGQTDKDL-AVIGVDDTWCRAIAAELEHDPAKCETISGTNPACSYYGK 269


>gi|254684768|ref|ZP_05148628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721061|ref|ZP_05182852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. A1055]
 gi|254743600|ref|ZP_05201285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Kruger B]
          Length = 243

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA
Sbjct: 4   KKFEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +   +Y       +     PI+ VD+T   L   A     +    ++ +TG++GK++
Sbjct: 62  IASLWKKSY------GSPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTT 115

Query: 129 VASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRL 162
           V   ++ I + +       G  + QIG   TI    +D  +
Sbjct: 116 VKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEI 156


>gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 511

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 144/376 (38%), Gaps = 63/376 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQ- 80
           V  DSR +  G +F+A+ G + DGH F  +A+  GA            AIVV     ++ 
Sbjct: 31  VEFDSRKVTPGGLFLALPGARVDGHDFAEKAVESGAVAVLAARPVGVPAIVVEPTGKVEG 90

Query: 81  -----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                D  A     +   V+            RL  +   NI+ VTG++GK+S    +  
Sbjct: 91  DGANADIYANDEDGSAAAVIQALSALARAVTQRLAAEDGLNIVGVTGSAGKTSTKDLIAT 150

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I + +G +    G      SF  +N +  P   Y A        +   ++  E S+ G+ 
Sbjct: 151 IFRAAGETVAPPG------SF--NNEVGLP---YTA----LRCDEHTEYLVAEMSARGIG 195

Query: 196 QHR-LDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADD 250
             R L GI     G   N+G  H+    +++    AK  L E  LP  +    A++ A+D
Sbjct: 196 HIRHLTGITAPKVGVVLNVGTAHLGEFGSRENIALAKGELVEA-LPSAAEGGVAVLNAND 254

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLF--- 304
           ++   +  R +       +V  QG         +    Q     V+  D     FL    
Sbjct: 255 SFVAGMALRTNAKVVYYSAVAKQG---------STPPAQYYATDVQLDDVARASFLMHTP 305

Query: 305 ---PLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              PLP      G  QV NAL AA   I +G+ + LV   L   H +         N R 
Sbjct: 306 GHAPLPVKLQVFGAHQVSNALAAAAAAIELGLSAELVANALSG-HRIASEHRMDVRNRRD 364

Query: 356 GRIYVDYAHTSNSLEM 371
           G   +D ++ +N   M
Sbjct: 365 GVTLIDDSYNANPDSM 380


>gi|220931750|ref|YP_002508658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
 gi|219993060|gb|ACL69663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
          Length = 456

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%)

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  E SS  L+  R    K    +F N   DH+D H + + Y+ AK R+FE  +  +   
Sbjct: 162 VVAEVSSFQLETIR--DFKPHISAFLNFSPDHLDRHLSVENYWKAKKRIFENQMSGDYAL 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKK-VCAIHNKQQVTISVEGK 298
           + Y D     +V+K   +   RV  V       QG ++   K +    ++ +V + VE  
Sbjct: 220 VNYDD----YKVLKAVEDCSARVFGVSLKDNIEQGIYLEEDKLIINSADRSEVVLPVES- 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G+  +YN   A+ +    G  +  + E + +    P R E V T  +   +
Sbjct: 275 -----IPLKGKHNIYNIAFASLIAYLAGASTEAIKEGVYQFIPEPHRLEEV-TVLKDRVM 328

Query: 359 YVDYAHTSNSLEMI--LKNIRTITSGRIIVVFGCGGDRD 395
            +D +  +N    I  LK+       + IV+   G DRD
Sbjct: 329 VIDDSKATNPHAAINALKSF-----DQPIVLIAGGQDRD 362


>gi|88856510|ref|ZP_01131167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
 gi|88814164|gb|EAR24029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
          Length = 508

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 23/135 (17%)

Query: 105 FASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            A RL  K   P   +A+TGT+GK++ A     I   +G   F+ G    I         
Sbjct: 114 LAWRLRDKTGTPAEWIAITGTNGKTTTAQLAAHILSTAG---FRAGAVGNIG-------- 162

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASS---HGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                I +  A+ Y    G   + VE SS   HG+ +  +  I  +A    N+  DH+D+
Sbjct: 163 -----IPVLDAIRY--PDGFDFLVVELSSFQLHGMPRTGVGAISPLASVCLNIADDHLDW 215

Query: 220 HQTQQAYFNAKMRLF 234
           H ++ AY NAK  ++
Sbjct: 216 HGSRAAYANAKATVY 230


>gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
 gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
          Length = 461

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 35/237 (14%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR    G +FVA+VG   DGH +     A GA A++ S             +  P +VV
Sbjct: 32  DSRQAVPGGLFVAVVGEHVDGHDY-----AAGAHAVLGSRP-----------TEAPTIVV 75

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +    L   A+ +  +    +LAVTG+ GK+    ++ +I   +G +       +T  S
Sbjct: 76  RDPIPALGKLAAYVVRRLDATVLAVTGSQGKTGTKDYLARILSAAGST------VATSGS 129

Query: 156 FAQDNRLTTPSPIYLAKALS-YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           F  +N L  P  +  A   + YL       + + A   G  +H  +       +  N+G 
Sbjct: 130 F--NNELGLPLTVLRAHPETRYLV------LEMGARRIGHIKHLCEIAPPDVAAVLNVGT 181

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            HI    ++ +   AK  +   L P E  A++ A D    E+  R      RVL+ G
Sbjct: 182 AHIGEFGSRDSIAFAKGEIVAALQP-EGTAVLNAGDPLVAEMTSRTR---ARVLTWG 234


>gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 463

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 146/384 (38%), Gaps = 78/384 (20%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR I  G +F+ + G + DGH FI  A   GA A           FS    S 
Sbjct: 26  LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELSG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGL 142
            P L+V++  K     A     K   +++AVTG++GK+S       V S   +  +  G 
Sbjct: 75  KPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   T+     D                         + +E     + Q  +  I
Sbjct: 135 YNNEIGLPYTVLHMPDDTE----------------------KIVLE-----MGQDHMGDI 167

Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250
           +L++          T +G  H++Y  ++      KM++ + +    S  I+ A      D
Sbjct: 168 RLLSEIARPRIAVLTLVGEAHLEYFGSRNKIAQGKMQIVDGM---NSDGILIAPGDPIID 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
            Y  E           V+  G Q +      V  I  +K  +T +          PLPG+
Sbjct: 225 PYLPE--------NQMVIRFGNQQEI----DVTGIQEDKDSLTFTTNVLATPVSLPLPGK 272

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
           +   NA+VAA +   + +    ++  L+ + +   R E+    + G  I  D Y     +
Sbjct: 273 YNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKA-ANGADILSDVYNANPTA 331

Query: 369 LEMILK---NIRTITSGRIIVVFG 389
           + +IL+   NI     G+ I V  
Sbjct: 332 MRLILETFANIAKNPGGKKIAVLA 355


>gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 455

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 146/353 (41%), Gaps = 56/353 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S D+R IQ G +FV   G   +GH F+ QA  +GA A +       Q         
Sbjct: 24  VSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKGAGASL------WQKDEPNPPEG 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142
            P+L VD+    L   A     +H    + +TG++GK+S    +        ++ +  G 
Sbjct: 78  YPLLFVDDPELALQEMARAYRNEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGN 137

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGVTHVSVEASSHGLDQHR 198
            + Q+G   TI    +D   T  + + +  +    + +LS     H++V           
Sbjct: 138 FNNQLGLPITILQLDED---TDVAVLEMGMSGFGEIEFLSKLARPHMTV----------- 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEV 256
                      TN+G  H+    ++     AK   FE +   ++  +++   D+   +E+
Sbjct: 184 ----------ITNIGEAHMQDLGSRAGIAKAK---FEIIQGMQNDGLLFYDGDEPLLQEL 230

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEG-KDFDFLFPLPGEFQVYN 314
           + +  +    + SV +  +  +L     IH N      +  G  + DF   + G  QV N
Sbjct: 231 VAKEQH----LQSVPFGLESNNLLYADNIHANADGSHFTTHGMMEGDFFISVLGRHQVKN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTS 366
            LVA  +   +G+ +  +   LE + +   R  + +GTN   G ++++ A+ +
Sbjct: 287 TLVAMLISHKLGLSNEQIRTSLEHVVLTDMRMQQILGTN---GALFINDAYNA 336


>gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 457

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/413 (20%), Positives = 158/413 (38%), Gaps = 58/413 (14%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     E+       DSR I  G +FV + G + DGH FI  A   GA A +   
Sbjct: 16  NDVSIFEGTQLEK----AEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENGAVATL--- 67

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S    +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 68  -------SEKEIANHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +             ++T  ++         + I L   + ++  +    V      H  D
Sbjct: 121 LL------------STTYKTYKTQGNYN--NEIGLPYTVLHMPEETEKLVLEMGQDHLGD 166

Query: 196 QHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPA--IIYAD 249
            H L  +     +   L G  H+ + + +      KM++ + + P     +PA  I+ A 
Sbjct: 167 IHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAQGKMQIADGMAPGSLLLAPADPIVEAY 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               K+V++    A   +  +              +  K  +T      +     P+ G+
Sbjct: 227 LPADKKVVRFGQGAELEITDL--------------VERKDSLTFKANFLEQALDLPVTGK 272

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
           +   NA++A+ + +  G+    + +  + L +   R E+    + G  I  D Y     +
Sbjct: 273 YNATNAMIASYVALQEGVSEEQIRQAFQDLELTRNRTEW-KKAANGADILSDVYNANPTA 331

Query: 369 LEMILKNIRTITS---GRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAI 414
           +++IL+    I +   G+ I V       G    Q    ++  ++ D+ DI I
Sbjct: 332 MKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDIVI 384


>gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 462

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/366 (19%), Positives = 150/366 (40%), Gaps = 34/366 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S+ I+ G +F+ +   + DGH FI  AI  GA+A + ++        A   S 
Sbjct: 27  ITSVAFNSKEIKPGGLFIPLKAAR-DGHDFIQDAIDHGAQATLWAND------PADAPSE 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V++T       A    G     ++AVTG++GK++              ++F +  
Sbjct: 80  IPVIQVEDTFTAFVDLAKYYLGLIGPKVIAVTGSAGKTTTKDMTAATLS----TTFNVYK 135

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T        +N+L  P  I     LS      V  V +  S  G  +       +     
Sbjct: 136 TQG----NYNNQLGVPFTI-----LSMPEDTEVLVVEMGMSGPGEIRFLAQLCPMDVAVI 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--HNAGCRV 267
           T +G  HI++  +++    AK+ + E L  KE    IY  D   + ++ +A       + 
Sbjct: 187 TMIGESHIEFLGSRENIAKAKLEILEGL--KEDGTFIYPGD---EPLVDQAVVDMPEIKK 241

Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           + VG    + ++ + +           ++   + +   P+ G++ V NAL+A  +  + G
Sbjct: 242 IRVGLDDSEDVYAENIVNEREHTHFYTNL-SPNVELSIPVSGDYNVKNALMACAVAYSQG 300

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-----TITS 381
           +    +   L +  +   R E++        +   Y    +++  +++N        +TS
Sbjct: 301 LAVEQIKTPLSQFKLTANRSEWLMGKDDIQILNDTYNANPSAMRAVIRNFSQLERPAVTS 360

Query: 382 GRIIVV 387
            +++V+
Sbjct: 361 HKVLVL 366


>gi|239636340|ref|ZP_04677342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
 gi|239597695|gb|EEQ80190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
          Length = 449

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 122/282 (43%), Gaps = 43/282 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + + S L+    G    ++S  AQ+      S  YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKNSRLTGRLSGNIGYVASKVAQE----VSSKEYLITELS 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G+            +Q++   I +I    TN+   H+DYH++ + Y NAK ++++
Sbjct: 169 SFQLLGI------------EQYK-PHIAII----TNIYSAHLDYHESLENYQNAKKQIYK 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTI 293
                +     Y    Y +  +  + N   + L    Q +   I++K    I  K    I
Sbjct: 212 NQTEDD-----YLICNYHQRHLIESENLKAKTLYFSTQQEVDGIYIKD-GFIEYKGVRII 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           SVE         LPGE  + N L A    I  G+    + + L     +  R +++GTN 
Sbjct: 266 SVED------LVLPGEHNLENILAAVLAAILAGVPIKAIADSLTTFSGIEHRLQYIGTN- 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 319 RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232]
 gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes
           MGAS8232]
 gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 463

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 146/384 (38%), Gaps = 78/384 (20%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR I  G +F+ + G + DGH FI  A   GA A           FS    S 
Sbjct: 26  LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELSG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGL 142
            P L+V++  K     A     K   +++AVTG++GK+S       V S   +  +  G 
Sbjct: 75  KPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   T+     D                         + +E     + Q  +  I
Sbjct: 135 YNNEIGLPYTVLHMPDDTE----------------------KIVLE-----MGQDHMGDI 167

Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250
           +L++          T +G  H++Y  ++      KM++ + +    S  I+ A      D
Sbjct: 168 RLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGM---NSDGILIAPGDPIID 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
            Y  E           V+  G Q +      V  I  +K  +T +          PLPG+
Sbjct: 225 PYLPE--------NQMVIRFGNQQEI----DVTGIQEDKDSLTFTTNVLATPVSLPLPGK 272

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
           +   NA+VAA +   + +    ++  L+ + +   R E+    + G  I  D Y     +
Sbjct: 273 YNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKA-ANGADILSDVYNANPTA 331

Query: 369 LEMILK---NIRTITSGRIIVVFG 389
           + +IL+   NI     G+ I V  
Sbjct: 332 MRLILETFANIAKNPGGKKIAVLA 355


>gi|331087235|ref|ZP_08336305.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408921|gb|EGG88382.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 125/316 (39%), Gaps = 38/316 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A + ++ P  +     +   L  + L G+   N    +AV+GT GK++  S +  I  
Sbjct: 75  YTAAVHADNPEFIAAKEHQLPMLTRAELLGQLMTNYKTPIAVSGTHGKTTTTSMISHI-- 132

Query: 139 RSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              L +    PT ++    +    N     S +++ +A  Y +S                
Sbjct: 133 ---LLAGDTDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNS---------------- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              LD +  I G   N+  DH+D+ +      ++  R F  LLPK+   II ++ +  ++
Sbjct: 174 --FLDFLPKI-GIILNVEEDHMDFFKDLDDIRHSFHR-FAALLPKDGTLIINSEISQYEQ 229

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLF-PLPGEFQV 312
           ++       C V++ G      +  +     N   V+  +   G   D +F  + GE  V
Sbjct: 230 IIA---GLNCNVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A      +GID   + + L        RFE+ GT   G  I  DYAH    +E  
Sbjct: 287 SNALSAIITGTLLGIDLEKIKKGLLSFTGTDRRFEYKGT-LDGVTIIDDYAHHPTEIEAT 345

Query: 373 LKNIRTITSGRIIVVF 388
           L   +      I  +F
Sbjct: 346 LSAAQHYPHREIWCIF 361


>gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
 gi|226722954|sp|B5FB37|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
          Length = 440

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 112/252 (44%), Gaps = 39/252 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V     ++ + +G+ +   G       FA  + L   + +Y+ +  S+
Sbjct: 110 VIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG----FAALDLLEQDAELYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E +S          +KL A +F NL  DH+D +Q    Y  AK+R+F+ 
Sbjct: 166 ---------QLETTST---------LKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDH 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                   I+  DD  +   +++       + S G+ QG +  ++K    +  +     +
Sbjct: 208 ----AEVCIVNRDDKQTYPDVEKT------LKSFGFDQGDYGCIEKDGIEYLAKDAMSLL 257

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G+  + N+LVA  L  A+GI+    L+ L   + +  R + V  N+  
Sbjct: 258 AANELG----LVGKHNIANSLVAIALLDAVGINLDATLDTLRTYNGLTHRCQVVADNN-- 311

Query: 356 GRIYVDYAHTSN 367
           G  +V+ +  +N
Sbjct: 312 GIRWVNDSKATN 323


>gi|269795578|ref|YP_003315033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097763|gb|ACZ22199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 464

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 14/110 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR + AG +FVA+VG   DGH     A+A GA  ++ S                P +VV
Sbjct: 32  DSRKVSAGALFVALVGESSDGHDHAAGAVADGAALVLASREL----------DGLPCVVV 81

Query: 96  DNTRKFLSLFAS----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           D+  + L L A+    RL    P  + AVTG+ GK++    +  +   SG
Sbjct: 82  DDVTRALGLVAAEHLRRLRASGPLQVAAVTGSVGKTTTKDLLGHVLSESG 131


>gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
 gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
          Length = 455

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + VS +SR+I  G +FVA++G + DGH F+   +   A  +VVSSA +  D       
Sbjct: 24  EFDGVSINSRNIAEGDLFVALIGERLDGHEFLAD-VTDRASGLVVSSADT--DLP----- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             P  VV++T   L   A          ++AVTG++GK+SV   +  I
Sbjct: 76  -LPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKTSVKDLISAI 122


>gi|325829942|ref|ZP_08163400.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
 gi|325488109|gb|EGC90546.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
          Length = 475

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 152/439 (34%), Gaps = 73/439 (16%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENIL 118
           P  I +G   IVVS+A         I  N P L     R       +++  Y       L
Sbjct: 60  PANIPEGNPVIVVSTA---------ILDNNPELAAAKARGLTIWHRAQMLAYLGRALQTL 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV GT GK++ +S +  +    G       PT  I              I  A   +  S
Sbjct: 111 AVAGTHGKTTTSSMLASVLDGMGED-----PTFLIGG------------IVRAYGTNAHS 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  H  VEA         L    ++    TN+  DH+D+++     +  K   F   +
Sbjct: 154 GTG-AHYVVEADESDKSFMHLSPRAVL---VTNIEADHLDHYRDLDEIYE-KFASFIGSV 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P +   ++   +   + +++ A  +G R+ + G+          C +         V G 
Sbjct: 209 PDDGGVVVACGE--DEALVRVACASGKRLFTYGF-------SDACDVRIASYEPNGV-GS 258

Query: 299 DFDFLFP-----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           DF    P            PG   V NA    GL  A+G D A   E L     V  RF+
Sbjct: 259 DFTLELPDGSVVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADFAGVKRRFD 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-- 405
            VG  + G  +  DYAH    +   ++    +    + V+F         + P+  ++  
Sbjct: 319 LVG-EAGGVTVVDDYAHHPTEIAATIEAASHLGFAHVHVLFQP---HRYSRAPLFTEVLK 374

Query: 406 -----ALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKG---NRIEAIRTA 452
                A D AD     D  P  E P      K    ++    G  E      RIE +   
Sbjct: 375 DDFGRAFDAADAVTFMDVYPAGEAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEVVPYL 434

Query: 453 IEMLNKQDVLVVAGKGHET 471
              L + D+L+  G G  T
Sbjct: 435 AGKLGEGDLLITMGAGDVT 453


>gi|255098853|gb|ACU00766.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bolletii]
          Length = 181

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 18/178 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+  + +AY +A    F E L  E   ++  DD  +  + +RAH  G RV  
Sbjct: 9   TNIEADHLDHFGSAEAY-SAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHERGIRVRG 67

Query: 270 VGYQGKF-------------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            G  G+                 K   A     Q+ ++ E         +PG     NAL
Sbjct: 68  YGSAGQAEAGGVPVAGQLRDWQFKDTGAT---AQIQLAGESAPRTMRLSVPGRHMALNAL 124

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            A      IG     VL+ L     V  RFE VG+     R++ DYAH    +  +L+
Sbjct: 125 AAVVAAAEIGASVDDVLDGLAGFEGVRRRFELVGS-VESVRVFDDYAHHPTEVRTVLQ 181


>gi|158320410|ref|YP_001512917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
 gi|167017286|sp|A8MH34|MURD_ALKOO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158140609|gb|ABW18921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
          Length = 454

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 13/183 (7%)

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           +++KAL   +   +    +EASS  L+   +   +   G+  NL  DH++ H+T + Y  
Sbjct: 149 FISKALETTADDVIV---IEASSFQLES--IVDFRPQVGAILNLTPDHLNRHKTMENYQK 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           AK  +F+     E  A+I  DD   +E  K+  A        ++  +G F+   K+ A+ 
Sbjct: 204 AKFNIFKN-QGAEDIAVINYDDVKLREESKQIYAKKVYFSRRTLLEEGVFVEDGKIVALK 262

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +  +  I  +   F     +PG   + NAL A  + +++G+D  ++   L+    V  R 
Sbjct: 263 DGHKKEIISKDDIF-----IPGNHNLENALAATAMTLSLGVDIDVIQHTLKTFKGVEHRT 317

Query: 347 EFV 349
           E V
Sbjct: 318 EIV 320


>gi|225677415|ref|ZP_03788382.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590559|gb|EEH11819.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 504

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 139/347 (40%), Gaps = 59/347 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTG 122
           G  A  +S A  +   SA    N  ++   N  K +     + A  + GK+   ++AV+G
Sbjct: 77  GHNANNISQAQIVVHSSAIESDNVELIAAKNNNKTVLHRSDILAEIMKGKY---VIAVSG 133

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++  + +  I   S + +  I     ++S+  +++L         K+ ++L     
Sbjct: 134 SSGKTTTTAMIASIFDHSNIDATVI-VGGILNSYQSNSKL--------GKSDTFL----- 179

Query: 183 THVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +EA     D+     +K+ A     T++  DHIDY+ T     NA    F + +  
Sbjct: 180 ----IEA-----DESDGTMLKIPAKIAVITSINNDHIDYYGTFDNIKNA----FSQFVNN 226

Query: 241 ESPAIIY----ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL----------------K 280
              A++      D   S  +     N   R  ++      I                  K
Sbjct: 227 AGSAVLSDSVDIDYDASNSITFGFENGSIRASNIKQHANSIEFDVLNNWIPASATCMTKK 286

Query: 281 KVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +V + H  + Q VT+         L    G  +V NAL A  + I +GI  A + + L +
Sbjct: 287 QVSSHHPLSSQCVTLGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLE 346

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
              V  RF  +  N +G ++  DYAH  N +   L   R+IT G++I
Sbjct: 347 FQGVARRFSLIA-NIKGVKLIEDYAHHPNEIYATLTAARSITKGKVI 392


>gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
 gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
          Length = 474

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 38/232 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++AG +F A  G   DGH +  +A+A GA A++ +    +           P +VV
Sbjct: 34  DSRKVEAGSLFAAFAGEHVDGHAYAERAVAAGAAAVLAARPVGV-----------PAIVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +  K L   A  +  +   +++A+TG++GK+S    + Q+ Q    + +  G       
Sbjct: 83  PDVEKALGALARAVVERLGTDVVALTGSAGKTSTKDLIAQVLQSHAPTVWTPG------- 135

Query: 156 FAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            + +N +  P     A A +      + ++G+ H+   A   GL   R+       G   
Sbjct: 136 -SLNNEIGLPLTALQATAETRHLVLEMGARGIGHI---AYLTGLTPPRI-------GLVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKR 259
           N+G  HI     ++    AK  L E  LP E+    A++ ADD   + +  R
Sbjct: 185 NVGTAHIGEFGGREQIAQAKGELVEA-LPAEADGGVAVLNADDLLVRAMSAR 235


>gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
 gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
          Length = 474

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 44/243 (18%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R    V  DSR ++ G +F A  G   DGH +  +A+A GA A++ +    +        
Sbjct: 26  RTAGPVVIDSRQVEPGSLFAAFEGEHVDGHDYAGRAVAAGAVAVLAARPVGV-------- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P +VV +  K L   A  +  +   +++A+TG++GK+S    + Q+ Q    + +  
Sbjct: 78  ---PAIVVPDVEKALGALARTVVERLGTDVVALTGSAGKTSTKDLIAQVLQHHAPTVWTP 134

Query: 148 G--------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G        P + + + A+   L              + ++G+ H+   A   GL   R+
Sbjct: 135 GSLNNEIGLPLTALKATAETRHLVL-----------EMGARGIGHI---AYLTGLTPPRI 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEV 256
                  G   N+G  HI     ++A   AK  L E  LP E+    A++ ADD   + +
Sbjct: 181 -------GLVLNVGTAHIGEFGGREAIAQAKGELVEA-LPSEAEGGVAVLNADDLLVRAM 232

Query: 257 MKR 259
             R
Sbjct: 233 SAR 235


>gi|167756017|ref|ZP_02428144.1| hypothetical protein CLORAM_01537 [Clostridium ramosum DSM 1402]
 gi|237734002|ref|ZP_04564483.1| folyl-polyglutamate synthetase [Mollicutes bacterium D7]
 gi|167704009|gb|EDS18588.1| hypothetical protein CLORAM_01537 [Clostridium ramosum DSM 1402]
 gi|229382828|gb|EEO32919.1| folyl-polyglutamate synthetase [Coprobacillus sp. D7]
          Length = 389

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 24/131 (18%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPL-------------PGEFQVYNALVAAGLC-IA 324
            K    I N Q V++ +   D D+ +P               G +QV NA +A  +C   
Sbjct: 200 FKAAAEIKNSQVVSVEI---DCDYRYPYHFSCLGYDYQLSNCGSYQVANATLAINVCDYL 256

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I +D +LV   L+     PGRFE      + G+IY+D AH  + ++ ++K +      + 
Sbjct: 257 IELDHSLVQRALDGFSW-PGRFE------KFGKIYLDGAHNIDGIKALIKTLHDQQIKKA 309

Query: 385 IVVFGCGGDRD 395
           +V+F   GD+D
Sbjct: 310 LVIFSALGDKD 320


>gi|291278997|ref|YP_003495832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
 gi|290753699|dbj|BAI80076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
          Length = 413

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 37/205 (18%)

Query: 47  VAIVGNKEDGHLFIPQAI--AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +AI  +K+DG  F P A    +  + +VVS   +++            L V+N  K +S 
Sbjct: 28  IAIFDDKQDG--FKPTADFDDENFDLVVVSPGLNIEK-----------LNVNNKSKVISE 74

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           +         +  + +TG++GKS+      QI  + GL S   G                
Sbjct: 75  YELVFNLVKDKTFIGITGSNGKSTTTFLTSQILNKIGLKSVACGN--------------- 119

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                +   L Y       +  VE SS  +D  R  G  L AG   N+  DH+D ++T +
Sbjct: 120 -----IGYPLGYAIFDDFDYFVVEFSSFQIDLMR-KGEFLDAGVIINITPDHLDRYKTFE 173

Query: 225 AYFNAKMRLFEELLPKESPAIIYAD 249
            Y  +K+RL  ELL  +   ++  D
Sbjct: 174 NYLKSKVRL-SELLKDDGFFVVGKD 197


>gi|77166311|ref|YP_344836.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani ATCC
           19707]
 gi|109892714|sp|Q3J790|MURC_NITOC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|76884625|gb|ABA59306.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosococcus oceani ATCC
           19707]
          Length = 476

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 134/336 (39%), Gaps = 41/336 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + +G + +VVSSA    +   +      I VV        L   R YG      +AV
Sbjct: 70  PQHV-EGCDVVVVSSAIDEDNTEVSAARGRLIPVVPRAEMLAELMRFR-YG------IAV 121

Query: 121 TGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
            GT GK++  S +  I   + L  +F IG    ++S   ++RL             YL  
Sbjct: 122 AGTHGKTTTTSLIAGILGEANLDPTFVIG--GQVNSIGANSRLGKGE---------YL-- 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V       +S  L Q  L  I       TN+  DH+D +        A    F   LP
Sbjct: 169 --VAEADESDASFLLLQPLLAVI-------TNVDADHMDAYGGDFTALKAAFLEFLHHLP 219

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
               A++  DD   +E++      G  VL+ G  +    HL+++     + Q  ++  GK
Sbjct: 220 FYGLAVVCLDDPVLRELLP---GIGRPVLTYGTCKEADYHLRELKQTQGQTQFQVARPGK 276

Query: 299 D--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
           D     +  LPG     NAL A  +   +GI  + +   L+    +  RF+  G   +  
Sbjct: 277 DNWLTVVLNLPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEIATPA 336

Query: 356 GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           G++ +  DY H    L   L+ IR      R++V+F
Sbjct: 337 GKVLLVDDYGHHPRELAATLEAIRAGWPERRLVVIF 372


>gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
 gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
          Length = 823

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 40/235 (17%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           R+  I+ + +DSR +      +F A+   + DGH +IP+  A+G    VV+      +  
Sbjct: 20  RQASISWILTDSRSLCFPEETLFFALKAKRNDGHKYIPELYARGVYNFVVA------EVP 73

Query: 84  ATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQIC 137
             +++ T +  LVV N  K L     RL GKH E     ++ +TG++GK+ V  ++ Q+ 
Sbjct: 74  EEMKNCTDVNFLVVGNVLKAL----QRLAGKHREQYQVPVIGITGSNGKTVVKEWLYQL- 128

Query: 138 QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                    + P   I  S  + ++++  P  +++    + L   G+    +  S  G  
Sbjct: 129 ---------LSPDKRIIRSPRSYNSQIGVPLSVWMMDEHTEL---GIFEAGI--SEMGEM 174

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +     I+   G  TN+G  H +   + Q     K+ LF     KE   I+Y  D
Sbjct: 175 ETLEPIIRPTIGVLTNIGGAHQENFSSLQDKCMEKLLLF-----KECDVIVYNGD 224


>gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 463

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 36/229 (15%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R    V  DSR I+ G +FVA  G   DGH F   A+A GA A +VS             
Sbjct: 26  RVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAAAAVADGAVAALVSR-----------E 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + P ++VD+ +      A  +  + PE  I+ VTG++GK+S    + ++C+  G +   
Sbjct: 75  VDAPSILVDDVQLAFGKLARAVVDRLPELKIIGVTGSAGKTSTKDVMAELCRALGPT--- 131

Query: 147 IGPTSTISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDG 201
           + P  T+     +N +  P + + + +   YL    S++G+ H+        L      G
Sbjct: 132 VAPEGTL-----NNEIGLPYTVLKVDETTRYLVLEYSARGIGHIDY------LCGIAPPG 180

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           I ++     N+G  H+    T      AK  L E + P     I+ ADD
Sbjct: 181 IAVV----INVGTAHMGEFGTVDGIARAKGELAEAVAPG-GVVILNADD 224


>gi|78184101|ref|YP_376536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9902]
 gi|118595699|sp|Q3AZI5|MURD_SYNS9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78168395|gb|ABB25492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9902]
          Length = 462

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 43/247 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG--PTSTISSFAQDNRLTTPSPIYLAKALS 175
           + +TGT+GK++V   +  +   +G+ +   G    S      +  R  TP P +L   LS
Sbjct: 113 VGITGTNGKTTVTHLLSHVLGHAGIVAPMGGNMGVSAADMALKIRRGETPKPDWLVMELS 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +EA  +         +    G +T L  DH++ H T +AY   K     
Sbjct: 173 SYQ--------IEAGPN---------LAPSIGIWTTLTPDHLERHGTLEAYRAIK----H 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-- 293
            LL + S AI   DDA        AH    +      +G ++     C         I  
Sbjct: 212 SLLQRSSLAIFNGDDADLS-----AHRPSLK------RGMWVKAAPPCHDDPPADFWIDD 260

Query: 294 --SVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +V+ ++   +FP     +PG     N L+       IG+++  + + LE    VP R 
Sbjct: 261 AGTVQAREGGAMFPAKVLAMPGAHNRQNLLLVTAAAAQIGLNAEQIAQGLESFPGVPHRL 320

Query: 347 EFVGTNS 353
           E +G+ S
Sbjct: 321 ENLGSTS 327


>gi|296107344|ref|YP_003619044.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
 gi|295649245|gb|ADG25092.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 455

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 126/315 (40%), Gaps = 51/315 (16%)

Query: 86  IRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           I+   P+L  V+++ + ++S     A  +  K+   ++AV GT GK++  S +  I  ++
Sbjct: 73  IKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQA 130

Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--- 196
           G++  F IG  S  S F         +   L K   ++        + E  S   D+   
Sbjct: 131 GMNPGFLIGGVS--SDFN--------TSACLGKGRWFVIE------ADEYDSAFFDKRPK 174

Query: 197 --HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             H    I ++     NL  DH D +    A    +       +PK   AI   DD    
Sbjct: 175 FMHYRPNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALN 229

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           EV+ R   +    L++    +++         +   +HN   V         +  +PL G
Sbjct: 230 EVLSRGQFSRIETLALSGDAEWVAELIDDSGSQFKILHNGVMVA--------EVSWPLIG 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F V N L A       G++  +  + LE+   V  R E V +N  G  +Y D+AH   +
Sbjct: 282 QFNVENGLAAIAATWNAGVNPVVAAKALEQFSPVKRRLE-VRSNRHGVTVYDDFAHHPTA 340

Query: 369 LEMILKNIRTITSGR 383
           +   +  ++   SGR
Sbjct: 341 ITKTIDALK--RSGR 353


>gi|227822653|ref|YP_002826625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium
           fredii NGR234]
 gi|227341654|gb|ACP25872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sinorhizobium
           fredii NGR234]
          Length = 463

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + SG  + Q+G     +    D            KA  + 
Sbjct: 117 IAITGTNGKSTTTALIAHILKSSGRDT-QLGGNIGRAVLTLDP----------PKAGRFF 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 166 V--------VECSSYQIDLAPT--LDPTAGILLNLTPDHLDRHGTMQHYADIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     A++  DD++S  + +R   AG +V+ +
Sbjct: 212 VAGSGTAVVGVDDSFSSLIAERVERAGTKVVRI 244


>gi|226943451|ref|YP_002798524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Azotobacter
           vinelandii DJ]
 gi|226718378|gb|ACO77549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azotobacter
           vinelandii DJ]
          Length = 448

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 138/333 (41%), Gaps = 59/333 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA   Y + P  I+A+TG++ KS+V + V ++ + +G               A    
Sbjct: 100 IELFAR--YARAP--IVAITGSNAKSTVTTLVGEMARAAG------------RRVAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           L TP       AL  L   G+    +E SS  L+   RL+       +  N+  DH+D +
Sbjct: 144 LGTP-------ALDLLD-DGIELYVLELSSFQLETTERLNAE---VATCLNVSEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
              QAY  AK R+F          ++  DDA S+ ++  A    C    +G        K
Sbjct: 193 ADLQAYHLAKHRIFR----GARQVVVNRDDALSRPLV--ADRLPCWTFGLGKP----DFK 242

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
               +    +  ++ +   F+ L P     + G     NAL A  L  A+G+  A +LE 
Sbjct: 243 GFGLLEENGEKCLAFQ---FETLMPVRELKIRGAHNQANALAAMALGHAVGLPFAPMLET 299

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGC--- 390
           L++   +P R +++      G  Y D +  +N  +    ++ +    +G+++++ G    
Sbjct: 300 LKRFAGLPHRCQWLRDVREVG--YYDDSKATNVGAALAAIEGLGADIAGKLVLIAGGDGK 357

Query: 391 GGDRDQGKRPIMGK------IALDLADIAIVTD 417
           G D    +RP+         +  D   IA+V D
Sbjct: 358 GADFSSLRRPVAEHCRAVVLLGRDAGRIAVVLD 390


>gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 638R]
          Length = 432

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 38/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+  AG +F+A+ G   +G+ F  QA+  G A AIV  + Y+ ++       N  
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPEN-------NRH 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I++VDN  + L   A+    +    ++ +TGT+GK++    +  +  +S    +  G   
Sbjct: 69  IILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +   KA   L+      + + A+  G  +  +   +   G  TN
Sbjct: 128 -------NNHIGVPMTLLRLKAEHELAV-----IEMGANHPGEIKFLVHIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L  KE S   I+ D+AY   +M  AH+    ++  
Sbjct: 176 VGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHDNAY---LMDIAHD--LNLIPY 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326
           G +        V    N   +T   + GKD D       L GE+   NAL A  +    G
Sbjct: 231 GSEDSLYVNGHVTG--NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFG 288

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384
           +++  + E L        R +   T      + +D A+ +N   M+  L+N R +T  + 
Sbjct: 289 VEAGKIDEALAGYTPRNNRSQLKKTADN--TLIID-AYNANPTSMMAALQNFRNMTVEKK 345

Query: 385 IVVFG 389
           +++ G
Sbjct: 346 MLILG 350


>gi|126665248|ref|ZP_01736231.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
 gi|126630618|gb|EBA01233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
          Length = 448

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 28/231 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GK++V + V  + + +G   +Q+     I + A D  L T + +Y+      
Sbjct: 111 IIAITGSNGKTTVTTLVADMARDAG---YQVAVGGNIGTPALD-LLNTGARLYV------ 160

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS  L+    D +  +A +  N+  DH+D +  + AY+ AK R+F  
Sbjct: 161 ----------LELSSFQLETT--DELNALAATVLNVSDDHMDRYPDKMAYYQAKQRIFRG 208

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  AI+  DDA S  + +      C  ++      F       + H    VT  ++
Sbjct: 209 C----QYAIVNLDDALSTPMARNTLRFICFGMNRVNPETFSTRDDSVSGH--PWVTWGLD 262

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                    L G   + N + A GL  A G+    +L      H +P R E
Sbjct: 263 NLIRADELGLVGRHNLSNVMAALGLGKAAGLPMDSMLATARAFHGLPHRCE 313


>gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 457

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 149/391 (38%), Gaps = 68/391 (17%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F     + ++ +   DSR I+ G +FV + G + DGH FI  A   GA   VV+ 
Sbjct: 16  NDVSLFA----DVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHDFIETAFENGA---VVT- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S    +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 67  ------LSEKEVANHPYILVDDVLSAFQTLAAYYLEKSAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +   +       G  + +IG   T+     D                 +   G  H+   
Sbjct: 121 LLSTTYKTYKTQGNYNNEIGLPYTVLHKPDDTE-------------KLVLEMGQDHLG-- 165

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPA 244
                 D H L  +     +   L G  H+ + + +      KM++ + + P     +PA
Sbjct: 166 ------DIHLLSKLAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPA 219

Query: 245 IIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
               +D     K+V++    A   V  +              I  K  +T      +   
Sbjct: 220 DPIVEDYLPTDKKVVRFGQGAELEVTDL--------------IERKDSLTFKANFLEQAL 265

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+ G++   NA++AA + +  G+    + +  + L +   R E+    + G  I  D 
Sbjct: 266 DLPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKA-ANGADILSDV 324

Query: 362 YAHTSNSLEMILKNIRTITS---GRIIVVFG 389
           Y     ++++IL+    I +   G+ I V  
Sbjct: 325 YNANPTAMKLILETFSAIPANEGGKKIAVLA 355


>gi|297243800|ref|ZP_06927730.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
 gi|296888221|gb|EFH26963.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
          Length = 536

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 13/111 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V SDSR I+ G +FVAIVG   DGH ++  A   GA   +V              +N 
Sbjct: 56  NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVE--------GTNL 107

Query: 91  PILVVDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQI 136
             +VV+N+ + L L A      R     P  I+ +TG+ GK++    ++ +
Sbjct: 108 NQIVVNNSVEALGLLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKAL 158


>gi|295839430|ref|ZP_06826363.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
 gi|295827475|gb|EFG65417.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
          Length = 474

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 26/166 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LAVTGT+GK++    +  I + +G  +  +G                
Sbjct: 103 LAWRLRGPGAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------- 149

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + L  A+  L+ +    ++VE SS+ L  H    ++  + +  NL  DH+D+H +  
Sbjct: 150 ---VSLLDAV--LAEEPYDVLAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMA 202

Query: 225 AYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
           AY   K R++E        A +Y  AD A  K V       GCR +
Sbjct: 203 AYAADKGRIYE----GNQVACVYNAADPATEKLVRAADVEEGCRAI 244


>gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
 gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
          Length = 487

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 151/380 (39%), Gaps = 42/380 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   S D+R ++ G +F AI G   DGH F+  A+ +      V +    ++F     
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAAL-EKGAGAAVVAEARAKEFEGA-- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              P+L V        L A R  G     +    I+AVTG+ GK+     ++ +    G 
Sbjct: 82  --GPVLAVPGEGDDPVLDAMRRLGLAARARTGAAIVAVTGSVGKTGTKEALRHVLSAQGA 139

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG- 201
           +       ++++S+  +N      P+ L + L   +  GV  + +   +HG +   L   
Sbjct: 140 TH------ASVASY--NNHWGV--PLTLTRMLED-TRFGVFEIGM---NHGAEILPLTAM 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T +   HI++ ++  A  +AK  +F  L P    A+I  D+   + ++  A 
Sbjct: 186 VRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPG-GVAVINRDNPNYERLLAHAQ 244

Query: 262 NA-GCRVLSVGYQGKFIHLKKVCA--IHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNA 315
            +   RV++ G          VCA  I  +  V++   +V G    +    PG     N+
Sbjct: 245 ASRAGRVITFGEHAA----ADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNS 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEM--- 371
           L       A+G D A     L  L    GR E        G  + VD ++ +N   +   
Sbjct: 301 LGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAA 360

Query: 372 --ILKNIRTITSGRIIVVFG 389
              L  I T   GR I V G
Sbjct: 361 LSTLAGIDTGAKGRRIAVLG 380


>gi|86148541|ref|ZP_01066828.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
 gi|85833687|gb|EAQ51858.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
          Length = 486

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 46/285 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   + L  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEADLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A M 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAVMC 233

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  EL+P+ S  +I     +S++   R  N     +  G QGKF            
Sbjct: 234 VDDPVVRELIPQVSRQVITY--GFSEDADIRIEN----YVQEGQQGKF------------ 275

Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              T+  EGK + D    +PG     NA  A  +     I    +L+ +        RF+
Sbjct: 276 ---TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFD 332

Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +G    G  + +   DY H    +++ ++  R+  T  R++++F
Sbjct: 333 HLGEYETGKGVAMLVDDYGHHPTEVDVTIQAARSGWTDKRLVMIF 377


>gi|332976984|gb|EGK13797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 474

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 149/371 (40%), Gaps = 51/371 (13%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           ++I  +  I+ V +  + +   A+  + +    + AVTG++GKS+  S V  I +RS   
Sbjct: 99  SSIPKSVAIVRVSDVNQAIWRLANWNWRQVRPQVAAVTGSAGKSTTTSMVTSILKRSRRV 158

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  +T +            P YL + LS      +  + +++ ++   Q R+  ++
Sbjct: 159 VHTQGNLNTFTYL----------PSYLLR-LSPGDEFLMLEMGMKSFNNIARQCRV--VR 205

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAH 261
              G+ TN+G  H            AK  L + L P    A +Y  AD   SK++  R  
Sbjct: 206 PEVGAVTNVGEAHAGQLGGVHRVVKAKQELIDGLRPG---ATLYLNADCLRSKQLSTRRF 262

Query: 262 NAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                   +      QG  I         N     +  EGK   F  P  G+  V NAL 
Sbjct: 263 RGSVYTFGIRNPADIQGSNIQYST-----NGVSFDVMTEGKRGRFFIPTWGDHNVLNALA 317

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSN--SLEMIL 373
           A G+  A+GI    + + L K+ +   R + +    RG  GR  ++ A  +N  +++  L
Sbjct: 318 AIGIARALGIGFHQIRDGLAKVKLPRMRLQRI----RGSHGRTLINDAWNANPSAMKAGL 373

Query: 374 KNIRTITSGRI-IVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE----- 423
             +R ++S R  I V G     GG    G R + G+ A  +    ++T      E     
Sbjct: 374 SVLRYLSSKRPGIAVLGDMMELGGYTRAGHREV-GRFAARMNLHQLITYGQKAREIGRTA 432

Query: 424 -----DPEKIR 429
                DP ++R
Sbjct: 433 LAAGMDPHRVR 443


>gi|282857257|ref|ZP_06266497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
 gi|282584907|gb|EFB90235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
          Length = 436

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 169/405 (41%), Gaps = 72/405 (17%)

Query: 71  IVVSSAYSLQDFSATIR--SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVSS  S +  + ++    N P+      +  L L A  L GK    I+AVTGT+GK++
Sbjct: 67  MVVSSGVSEKSDAVSMARAKNVPV------QGELDLLAPFLKGK----IIAVTGTNGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + +  + + +GL++   G                     +   L+  + +    + +E
Sbjct: 117 CTALIAHLLRNAGLNAVSAG--------------------NIGNPLAAHADRSYDAIVME 156

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAII 246
            SS  L  H    ++      TNL  DH+D+H + + Y N K ++F   LP+  E  A+ 
Sbjct: 157 LSSFQL--HWNTQLRPDVAVLTNLAPDHLDWHGSYENYKNDKCKIF---LPRQEECYAVT 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +  DA+     +     G   L +   G+ + L      H ++++              L
Sbjct: 212 HDVDAFRVPAGRAVCALGRGNLRIDMDGRDVFLVG----HGRRRLLFHKSS------LKL 261

Query: 307 PGEFQVYNALVAAGLCIAIG-----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            G   + NA ++   C A+      +D +  L   E LH    R E VG   + G +++D
Sbjct: 262 LGSHNLENAAMS---CAAVALAFRDVDPSAGLAGFEALH---HRCEPVG--EQNGVLFID 313

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            +  +N +  ++  + +I   ++I++ G G      +   + ++  +    AIV      
Sbjct: 314 DSKGTN-VAAVIAALHSINGRKLIILGGQGKGESYDE---LARVVCEETFAAIVI----- 364

Query: 422 SEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             + EKI A + + G    +   +  EA++ A E+    D ++++
Sbjct: 365 GSEAEKILAALRVAGYGHAVRAKDMAEAVKKASELAAPGDKVLLS 409


>gi|325980956|ref|YP_004293358.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
 gi|325530475|gb|ADZ25196.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
          Length = 475

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 95/237 (40%), Gaps = 35/237 (14%)

Query: 210 TNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR----- 259
           TN+  DH+     D+++ +Q +       F + LP    A++  DDA  +EVM       
Sbjct: 179 TNIDADHMETYGYDFNKLKQTFVE-----FLQHLPFYGMAVVCIDDANIREVMPAITKSI 233

Query: 260 -----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                + +A  R  ++ +     H  K  A+     + ++   +  D    LPG   + N
Sbjct: 234 TTYGLSEDAQVRATNIQHSN---HQMKFTAV-----IGVNGSARRLDITLNLPGLHNIQN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSLE 370
           AL A  +   I +  A ++  L +   V  RF+  G    +  +   +  DY H    +E
Sbjct: 286 ALAAIAVANEICVPDAAIVRALAEFKGVERRFQQFGEIRLSMQKSFTLIDDYGHHPAEME 345

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP 425
             +K  R    GR +VV      R    R +       L  AD+ ++T+  P  EDP
Sbjct: 346 ATMKAARGAFPGRRLVV-AFQPHRYTRTRDVFEDFTRVLSQADVLLLTEVYPAGEDP 401


>gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
 gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
          Length = 785

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 15/222 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-L 268
           TN+  DH+D++ T +    A  R F E +  +  A++  ++A  + + +      C V  
Sbjct: 186 TNVEDDHMDHYGTMEKII-AAFRQFIEQVDTDGAAVLCFENANLRNIARETKR--CVVSY 242

Query: 269 SVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIA 324
           ++ Y+  +    +   I  +  +   T+   G +   +   +PG   V NAL    +   
Sbjct: 243 AIDYEADY----RASDIETRGSLISFTVHERGAEMGHISLNIPGRHNVLNALACIAVARL 298

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++   +   L + H    RF+  G   RG  +  DYAH    + + L   R     R+
Sbjct: 299 VGVEFPAIRAALAQFHGAKRRFQTKG-KERGVWVVDDYAHHPTEISVTLAAARQTNPERL 357

Query: 385 IVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           I VF      R Q  R   G+   D AD+ ++TD     E P
Sbjct: 358 ICVFQPHRYSRTQLLREEFGRCFAD-ADLLLLTDIYAAGEAP 398


>gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
 gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
          Length = 432

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 38/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+  AG +F+A+ G   +G+ F  QA+  G A AIV  + Y+ ++       N  
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPEN-------NRH 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I++VDN  + L   A+    +    ++ +TGT+GK++    +  +  +S    +  G   
Sbjct: 69  IILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +   KA   L+      + + A+  G  +  +   +   G  TN
Sbjct: 128 -------NNHIGVPMTLLRLKAEHELAV-----IEMGANHPGEIKFLVHIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L  KE S   I+ D+AY   +M  AH+    ++  
Sbjct: 176 VGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHDNAY---LMDIAHD--LNLIPY 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326
           G +        V    N   +T   + GKD D       L GE+   NAL A  +    G
Sbjct: 231 GSEDSLYVNGHVTG--NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFG 288

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384
           +++  + E L        R +   T      + +D A+ +N   M+  L+N R +T  + 
Sbjct: 289 VEAGKIDEALAGYTPRNNRSQLKKTADN--TLIID-AYNANPTSMMAALQNFRNMTVEKK 345

Query: 385 IVVFG 389
           +++ G
Sbjct: 346 MLILG 350


>gi|329298857|ref|ZP_08256193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Plautia stali
           symbiont]
          Length = 439

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 41/238 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I                   AL+ 
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIG----------------LPALTL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L S    +V +E SS  L+      +K  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LKSPAQLYVVLELSSFQLETTY--SLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYE 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADD  +  V      A  R +S G      HL       N+QQ +  +
Sbjct: 206 ----NADICVVNADDGMTMPV----RGADRRCVSFGIDVGDYHL-------NQQQGSTWL 250

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             K    L      L G+    NAL A  L  A+ I  A  L+ L     +P RF+ V
Sbjct: 251 RVKGEKVLNTDEMKLVGQHNYTNALAALALADAVNIPLASSLKALTTYSGLPHRFQLV 308


>gi|226311413|ref|YP_002771307.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
 gi|254765985|sp|C0ZAJ4|MURC_BREBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226094361|dbj|BAH42803.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
          Length = 460

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 137/338 (40%), Gaps = 57/338 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA++IV         +S +I  + P ++         +  S++  +  +    +AV G 
Sbjct: 62  EGADSIV---------YSTSISKDNPEVIAGQALGIPVMHRSQMLARILNERTGVAVAGA 112

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKAL----SYLS 178
            GK++  S +  + +  G+  +F IG    + S   + +  T S   +A+A     S+L 
Sbjct: 113 HGKTTTTSMISHVLEECGVDPTFIIG--GELMSAGTNAKAGT-SDYVIAEADESDGSFLE 169

Query: 179 SQGVTHV--SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + +  +  S+E           D ++   G F NL          +QAY       F  
Sbjct: 170 YRPMYEIVTSIEP----------DHLEHFDGDFNNL----------KQAYVQ-----FLS 204

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTI 293
            L  +  AI+  DD++ +EVM         V++      F+   +  A       +  T 
Sbjct: 205 HLKPDGKAILCIDDSHVREVMPSVEKT---VVTYAVDPNFVAQAQFSATSIECGDRCSTC 261

Query: 294 SVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V  KD    +    +PG+  + NAL A  +C+ IG+    + + L        RF+ +G
Sbjct: 262 QVYHKDERLGELCLVVPGKHNIANALAAIVVCLDIGLSFDKIAQALSTFSGAKRRFQIIG 321

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            ++RG  +  DYAH    +   L   R  +  R+I VF
Sbjct: 322 -DARGVLVVDDYAHHPTEIIATLSGARA-SGRRVIAVF 357


>gi|154498342|ref|ZP_02036720.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
 gi|150272653|gb|EDM99831.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
          Length = 491

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 106/285 (37%), Gaps = 47/285 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----------FAQDNRLTT 164
           +N L ++GT GK++  S    I   +     Q  PT  I              + + +  
Sbjct: 147 KNALCISGTHGKTTTTSMCTHIAMAA-----QADPTVMIGGTLPLLGAGHRVGRGDTIIL 201

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            S  Y    LS+  +  V  + +EA                         DH+D+ +  +
Sbjct: 202 ESCEYCNSFLSFFPTVAVI-LDIEA-------------------------DHLDFFKDLE 235

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                  R F +L+P++   +   DD   +  M         +++ G +   +H   +  
Sbjct: 236 D-VEKSFRTFADLVPEDGVIVANRDD---ENTMHTLEGEARPMVTFGLEEGDVHAANLTW 291

Query: 285 IHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   +  +G+ F  +   +PGE  V NAL AA   I +G+ +  V E L       
Sbjct: 292 SRGLPTFDVIWKGQPFAHVSLRVPGEHNVKNALAAAASAIVLGMPAKAVEEGLSAFRGAA 351

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            RFE  G+   G  +Y DYAH    L+ +L  +  +   RII  F
Sbjct: 352 RRFEHKGS-YHGAEVYDDYAHHPGELKALLSAVSGLGYDRIICAF 395


>gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
 gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 57/359 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA++G   DGH F+ QA AQGA   +VS             ++
Sbjct: 23  VSGVAFDSREVGPGDLFVAMLGEATDGHRFLDQAFAQGAAGALVS-------------AD 69

Query: 90  TP---ILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS----- 140
           TP   + V D+ R    L  ASR   +    I+ VTG+ GK+S    +    +R      
Sbjct: 70  TPHPHVKVADSFRALEDLGRASR--ARTQATIIGVTGSVGKTSAKEALYAALERGWHGRV 127

Query: 141 --GLSSF--QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              + S+    G   +++   +D R       +  A  LS L++    H+++        
Sbjct: 128 HRSVKSYNNHTGVPLSLARMPRDVRAGVFEMGMNHAGELSALTAMVRPHIAI-------- 179

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                         T +   H ++   + A  +AK  +F+ L P  + AII  D  +   
Sbjct: 180 -------------VTAIAPAHTEFFPDESAIADAKGEIFQGLEPGGT-AIIPYDSPHRDR 225

Query: 256 VMKRAHNAGCRVLSVGYQ-GKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++  A     R+++ G+     +H ++ +   +    VT  +  ++ +F    PG+  V 
Sbjct: 226 LIAAAKPYAARIVTFGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVS 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEM 371
           NAL       A G D  L    L +L  + GR   F   N   G + +D ++ +N   M
Sbjct: 286 NALAVLAAVDAAGGDLGLAGLALAELGGLAGRGARFRAAN---GALIIDESYNANPASM 341


>gi|239813927|ref|YP_002942837.1| UDP-N-acetylmuramate--L-alanine ligase [Variovorax paradoxus S110]
 gi|259509785|sp|C5CNF5|MURC_VARPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239800504|gb|ACS17571.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus S110]
          Length = 485

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 123/319 (38%), Gaps = 44/319 (13%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A A   GA+A+V S+A    +          I VV        L   RL     + 
Sbjct: 54  FVGHAAAHIDGADAVVTSTAVQSDNPEVLAAREKRIPVVPRALMLAELM--RL-----KQ 106

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  +   +GL      PT     F    RL +      A A + 
Sbjct: 107 GIAIAGTHGKTTTTSLVASVLDAAGLD-----PT-----FVIGGRLNS------AGANAQ 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L S    ++ VEA     D   L+ + ++A   TN+  DH++ +    A        F  
Sbjct: 151 LGSG--DYIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFAKLKKAFVDFLH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IHNKQQV 291
            +P    AI+  DD   ++++       C V S G+    Q + I ++ V   +H   Q 
Sbjct: 206 RMPFYGVAILCTDDPAVRDIVAEVT---CPVTSYGFGEEAQVRAIDVRAVGGQMHFTAQR 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              V   D   +  LPGE  V NAL    + + +GI    V   L     V  RF+  G 
Sbjct: 263 RNGVTLPDLPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGE 322

Query: 352 NSRGGR------IYVDYAH 364
            +  G       +  DY H
Sbjct: 323 VAAQGEPAGSFTVIDDYGH 341


>gi|317402449|gb|EFV83018.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Achromobacter
           xylosoxidans C54]
          Length = 510

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 25/161 (15%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R    L  +R Y   P  +LAVTGT+GK++V +  + +   SGLS    G         
Sbjct: 117 ARALAELAETREY--RP-RVLAVTGTNGKTTVTALTRDLVAASGLSVLAAGNI------- 166

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                   SP  L   +  L +  +  V V E SS  L+      +   A    N+ +DH
Sbjct: 167 --------SPAALTALMQALDADDLPQVWVLELSSFQLETTHT--LMADAAVVLNVTQDH 216

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           +D+H    AY   K R    LL     AI+  DD Y+ +++
Sbjct: 217 LDWHGGMDAYARTKAR----LLKMTRIAIVNRDDPYTVDMV 253


>gi|293603445|ref|ZP_06685870.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
 gi|292818147|gb|EFF77203.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
          Length = 468

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 111/285 (38%), Gaps = 41/285 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S V  +     L  +F IG    ++S   + RL              
Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGDLDPTFVIG--GRLNSAGANARL-------------- 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG  ++ VEA     D   L+ + ++A   TN+  DH+D +    A   +    F +
Sbjct: 152 --GQG-DYIVVEADES--DASFLNLLPVMA-IVTNIDADHMDTYGHDVARLKSAFIEFTQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    A++ +DDA  +E+M        R ++     +   ++      +  ++  +V+
Sbjct: 206 RLPFYGSAVLCSDDANVREIMPFV----SRPITTYGLNEDAQVRAYEVQPSGTRMRFNVQ 261

Query: 297 GKDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--- 346
               D L P       LPG   V NAL A  +   +G+    + E L     V  RF   
Sbjct: 262 RTHRDTLLPPLQVELNLPGLHNVRNALAAIAVATELGVSDDAIRESLAAFKGVGRRFTQT 321

Query: 347 -EFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
            EF    S GG  +    DY H    +   L   R     R IV+
Sbjct: 322 GEFPVPASHGGGTFTVIDDYGHHPVEMAATLSAARGAWPDRRIVL 366


>gi|239621165|ref|ZP_04664196.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239515626|gb|EEQ55493.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 474

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 103/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 93  PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLC- 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 152 --------------VELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSK 195

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F         AI+Y A DA   E+   A  A GCR   VG+              G  +
Sbjct: 196 VFH----NAKRAIVYNAQDAKVSELAAEAQTAEGCR--KVGFTLEAPQAGQIGIEDGWIV 249

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + V ++    DF  L    G      V +AL A  L + +G D    L+
Sbjct: 250 DRSGVAGGAVGESVRLAAI-TDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALK 308

Query: 335 HLEKLHVVPGRFEFVGTNS-RGGRI-YVDYAHTSN 367
            L        R E V   +  GG + +VD +  +N
Sbjct: 309 ALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATN 343


>gi|114778007|ref|ZP_01452907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551613|gb|EAU54166.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus
           ferrooxydans PV-1]
          Length = 460

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 40/242 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E  +AVTGT GKS+ ++ + ++ Q +G SS  +G    I   A D              L
Sbjct: 109 EKTIAVTGTKGKSTTSTIIHRMLQAAGKSSVLVG---NIGKPAFDE-------------L 152

Query: 175 SYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             L    V  +  E SSH L    R   + ++     NL  +H+DY+ +  AY+ AK  +
Sbjct: 153 EALEQADV--IVCELSSHQLTTVTRSPNVAVL----LNLFPEHLDYYSSLDAYYQAKTAV 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVT 292
           F    P +   ++ AD    +E+   A         +  + +F H   ++ A  ++  + 
Sbjct: 207 FRYQGPDDY-LVLNADSPECREMTTTA---------LAKKLQFSHDDCQLDAWFDESSIH 256

Query: 293 ISVEGKDFDF---LFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           I  +G D +       L G F +YN + A  A   +A+ ++ A++ + L+    +P R E
Sbjct: 257 IQTDGGDIEVPHACCELLGAFNMYNVMAAILATSRMAV-VNRAVIEQALKGFTGLPDRME 315

Query: 348 FV 349
           +V
Sbjct: 316 YV 317


>gi|114704924|ref|ZP_01437832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fulvimarina
           pelagi HTCC2506]
 gi|114539709|gb|EAU42829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fulvimarina
           pelagi HTCC2506]
          Length = 463

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 26/170 (15%)

Query: 102 LSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           + +F      K PE   +A+TGT+GKS+  + +    + +G  + Q+G    +       
Sbjct: 99  VEIFGRERASKAPEARFVAITGTNGKSTTTALIAHCLKEAGRDT-QLGGNIGVPVLT--- 154

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            L  P+P                H  VE SS+ +D     G+K       NL  DH+D H
Sbjct: 155 -LQEPTP--------------ERHYVVECSSYQIDL--APGLKPSVALLLNLTADHLDRH 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            T + Y + K    E L+     A+I ADD + + +  R   AG  V+ +
Sbjct: 198 GTIEHYASVK----ERLVVGADRAVIGADDIWCRAIADRIEAAGRPVVRI 243


>gi|184201127|ref|YP_001855334.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
 gi|183581357|dbj|BAG29828.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
          Length = 468

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 163/449 (36%), Gaps = 86/449 (19%)

Query: 58  LFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--H 113
           +F+ Q  A   GA  +VVS+A         IR   P L          L  S+      H
Sbjct: 60  VFVGQDAAHVAGASTVVVSTA---------IREQNPELAAARGAGLRVLHRSQALAAAMH 110

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYL 170
              ++AV GT GK++ +S      + +GL      P+  I +   D   N        ++
Sbjct: 111 GRRVIAVAGTHGKTTTSSMTAVALRAAGLR-----PSWAIGAHVADLGANAGFDAGEWFV 165

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           A+A     S    H  V                      TN+  DH+D++ + +A+  A 
Sbjct: 166 AEADESDGSFMAYHPEVAV-------------------VTNVEPDHLDHYGSAEAFHRA- 205

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVC--AIHN 287
              F + + +    +  ADD  +  + +R    G  VLS G   G  + L ++       
Sbjct: 206 FDEFSDTIREGGTLVACADDPGAARLAERRRTRGGAVLSYGTDPGADVVLSELTPHGTGT 265

Query: 288 KQQVTISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             ++   V G   + L  L  PG     +A  A     A G D   +L  L   H    R
Sbjct: 266 TCRIGFPVPGGRREALLELAVPGAHNAADAAAAFAAGCAAGADPEQLLAGLADFHGSARR 325

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGK 404
           F+  G    G R++ DYAH    +   L   R +  GR ++ +F          +P +  
Sbjct: 326 FDLKGEQG-GVRVFDDYAHHPTEVAAALGAARDVAGGRRVLAIF----------QPHLYS 374

Query: 405 I----------ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RI---- 446
                      AL+LAD+A VTD     E PE        GI G    G+    R+    
Sbjct: 375 RTREFAEAFCRALELADLACVTDVFGAREQPEP-------GITGATITGHARNGRVVSTP 427

Query: 447 ---EAIRTAIEMLNKQDVLVVAGKGHETV 472
              EA+   +      DV++  G G  T 
Sbjct: 428 ATREAVEAVVARAEPGDVVMTVGAGDVTT 456


>gi|182439212|ref|YP_001826931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467728|dbj|BAG22248.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 476

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 26/160 (16%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+ P   LAVTGT+GK++    +  I + +GL +  +G                   + L
Sbjct: 113 GRKPAPWLAVTGTNGKTTTVRMLASILRAAGLRTEAVGNIG----------------VSL 156

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A+   +   V  ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K
Sbjct: 157 LDAVVGETEYDV--LAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADK 212

Query: 231 MRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
            R++E      + A +Y  AD A    V +     GCR +
Sbjct: 213 GRVYE----GNTVACVYNVADPATEDLVREADVVEGCRAI 248


>gi|123969098|ref|YP_001009956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. AS9601]
 gi|123199208|gb|ABM70849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 476

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 29/240 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + +TGT+GK++V   +  I   +GL           + FA +  + TP    L K   
Sbjct: 119 NWIGITGTNGKTTVTHLLSHILCDTGL----------YAPFAGN--IGTP----LCKYAY 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + +  V  E SS+ ++      +K   G +T    DH++ H+T + YFN K  L E
Sbjct: 163 SKKHEKIDWVVAELSSYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSLLE 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +S   IY  D  +      + + G  + +   +  FIH    C      Q  I  
Sbjct: 221 -----KSDFRIYNYDDKNLRNYYSSLSRGVWITTSLDKSNFIH----CDYWIDDQAYIVE 271

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            GK    L  F L G   + N L+       +G+    + + L     +P R E +  N+
Sbjct: 272 RGKKLFKLEHFSLKGMHNLQNLLLVIAAARKVGLSGKKIKDSLSNYKQLPHRMETIYKNN 331


>gi|94991839|ref|YP_599938.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94545347|gb|ABF35394.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 121

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 3/116 (2%)

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGF 439
           +G+++++ G  G++ + +R   G++     ++ ++ T D+P  EDPE I  EI   I   
Sbjct: 6   TGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIARP 65

Query: 440 IE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +E   +R +AI+ A+ +    +D +++AGKG +   IV   +   + D  I +  L
Sbjct: 66  VEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQIVKGQQVAYAGDLAIAKHYL 121


>gi|239947619|ref|ZP_04699372.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921895|gb|EER21919.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 321

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSQDVKKGDLFIALQGNR-DGHDYVLDAIDKGAVAVIVSKQIDIAD-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            I++V++  + L   A           +A+TG+ GK+S    ++ +   +   S  +
Sbjct: 75  KIILVEDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKTLLTEANYKSLDL 131


>gi|225181552|ref|ZP_03734994.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167800|gb|EEG76609.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 898

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 146/377 (38%), Gaps = 39/377 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKA 173
           + +VTGT+GK++ A  ++ + +R GL +  I  T  I    Q  +   LT P       A
Sbjct: 482 VFSVTGTNGKTTTARMLEFVMRRHGLYT-GICCTDGIYFNGQQVKKGDLTGP-----LSA 535

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKM 231
            + L+   +    +E +  GL +  L   +      TN+  DH+  D  +T     + K 
Sbjct: 536 RTVLAHPDIEVAVLETARGGLIRRGLGYDRADVAVITNIRADHLGQDGIETLDDLAHVKS 595

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVGYQGKFIHL 279
            + E + P     ++ AD+ +  E+  R       V            L  G +  F+  
Sbjct: 596 LVAEAVYPAGC-VVLNADEPHVNELAARVWAEVIYVSMQSDNIVVRHHLGKGGRAVFVRR 654

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLE 337
             V A H    V +   G+   F+    G    QV N L A   C   G+       +L 
Sbjct: 655 GLVLAAHGSGVVPV---GRVRSFVVTHGGRALHQVENLLGALAACWGFGLSPRQAAAYLR 711

Query: 338 KLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
                PG         + G  R+ VDY H ++ +E      + + + R+I V G  GDR 
Sbjct: 712 TFAAQPGDNPGRCNLYQVGDIRVLVDYGHNADGIEKTGLLAKKLGAERLIGVVGVPGDRS 771

Query: 396 QGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI-------PGFIEKGNRIE 447
                  G+ A    D+ ++ +D+  R   P ++   ++ G             + N   
Sbjct: 772 DELVMQAGQAAAGFFDLLVIKEDHDLRGRRPREVAGLLMRGALNAGRDRAALKVEPNERR 831

Query: 448 AIRTAIEMLNKQDVLVV 464
           A++ A+ +    D++V+
Sbjct: 832 AVKKALALSRPGDLVVI 848


>gi|225351404|ref|ZP_03742427.1| hypothetical protein BIFPSEUDO_02998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157748|gb|EEG71031.1| hypothetical protein BIFPSEUDO_02998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 422

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/427 (20%), Positives = 173/427 (40%), Gaps = 32/427 (7%)

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQI---CQRSGLSSFQIG 148
           +++ RK +SL ++  YG +P+N L + G +G       A   Q +   C     + F   
Sbjct: 1   MNDARKAMSLLSAAFYG-YPQNQLKIIGITGTKGKTTTAYLTQAMLNGCSCGKCALFSSA 59

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     ++ LTTP  +   + +   +  G+ ++ +E SS      R+ G+     +
Sbjct: 60  DNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEVSSQAYKVDRVFGLTFDVAA 119

Query: 209 FTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           F N+  DHI    H T + YF+ K ++ +         ++    A++  + + A  A   
Sbjct: 120 FLNISPDHISPIEHPTFEDYFHCKRQIVKNC----RSLVLGTACAHADLIRQDAAIADIP 175

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIA 324
           V +    +     +       +  +  I+VEG+    L   L G+F   NA  A  +  A
Sbjct: 176 VTTFALGEASAADVTAWPESADHSRFAIAVEGEQIGSLSLQLDGDFNYANAAAAIAIAHA 235

Query: 325 IGID-----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378
           +G D     +   L ++E + +  GR E            VDYAH   S+  +L  +   
Sbjct: 236 VGFDFHETAAKEALRNMEPVRIA-GRMEHFHDTKSNTIAIVDYAHNYASVTALLDYVYQR 294

Query: 379 --ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                  + +V G  G++   +R  + + A +  +  I+T ++   E  E +  +++  +
Sbjct: 295 YGKDDPEVTLVTGSAGNKAYDRRSEIVRAAQNRVNHLILTFEDTDDEPVEHVCQDMLDSV 354

Query: 437 --PGFIEK--GNRIEAIRTAIEM----LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
             P    +   +R EA+ + + +     N+  ++++ GKG+E              D  I
Sbjct: 355 TNPDLDARIILDRTEAVESTVAIDRKNPNRLHIILIIGKGNERWFKDHGKHIPFEGDDHI 414

Query: 489 IREILGL 495
           +  I GL
Sbjct: 415 VERIFGL 421


>gi|254432056|ref|ZP_05045759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197626509|gb|EDY39068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 428

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 143/362 (39%), Gaps = 49/362 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSATI--RSNTPILVVDNT 98
           +F+A+VG + DGH F+ QAI  G+ A+V+   +    SLQ   A    R      V D  
Sbjct: 1   MFLALVGERFDGHDFLEQAIQAGSAAVVLQGDHLPPASLQSLMALAGERGCGLWAVPDTV 60

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA- 157
             +  L A    G     ++AVTG++GK++    ++ +    G         S ++S   
Sbjct: 61  LAYQQLAAGWRRG-FAGPVVAVTGSAGKTTTRELIRAVLAPLG---------SVVASRGN 110

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ-HRLDGI-KLIAGSFTNLGR 214
           ++N L  P        L+ L        + VE    GL +  RL    +      TN+G 
Sbjct: 111 ENNDLGVP--------LTLLRLTDADRAAVVEMGMRGLGEIERLSRCAQPDVAVITNIGT 162

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            HI    +++A   AK  +   L P+    I   D      +      A  R+   G  G
Sbjct: 163 AHIGRLGSREAIAQAKCEITTSLQPQGVVVIPAGDPLLDAALAAVWQGAVLRIALAGDPG 222

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +     +   +  +     SV         PL G     N ++A  +   +G+      E
Sbjct: 223 E----AEADWVGQEDPAAGSVVVDGVAVPLPLEGRHHARNLMLALAVARHLGVGP----E 274

Query: 335 HLEKLHV-VPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVV 387
            L++LHV +PG     G + R   GG   +D  + + S E +L ++  + +   GR   V
Sbjct: 275 RLQQLHVALPG-----GRSRRLAVGGIRLLDETYNA-SPEAVLASLELLATQAGGRRYAV 328

Query: 388 FG 389
            G
Sbjct: 329 LG 330


>gi|302877576|ref|YP_003846140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580365|gb|ADL54376.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
          Length = 463

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 25/171 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGT 123
           G E I +S    L D      +   I VV +    + LFA +L   H   P  +LA+TG+
Sbjct: 68  GIELIAISPGVPLADPYIARAAARGIPVVGD----IELFAQQLRASHAPLPGKVLAITGS 123

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V S V+ +C+ +GL +   G                 SP  L   L     Q   
Sbjct: 124 NGKTTVTSLVEHLCRAAGLDAVAAGNI---------------SPAVLDVVLQRGDKQPEV 168

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            V +E SS  L+  R   +   A +  N+  DH+D +     Y  AK ++ 
Sbjct: 169 WV-LELSSFQLETTR--SLTADAATVLNVSEDHLDRYLGMDEYAAAKQQIL 216


>gi|152967145|ref|YP_001362929.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kineococcus
           radiotolerans SRS30216]
 gi|151361662|gb|ABS04665.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kineococcus
           radiotolerans SRS30216]
          Length = 533

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 21/121 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT+GK++V     +I + +GL +   G             + TP    L +AL + 
Sbjct: 152 LTLTGTNGKTTVVEMTAEILRAAGLRATSAG------------NVGTP----LVEALRH- 194

Query: 178 SSQGVTHVSVEASSHGLDQHRLD---GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              G   ++VE SS+ L     D    ++ +A +  NL  DH+D+H + +AY  AK R++
Sbjct: 195 -PHGFEVLAVELSSYQLHWLSTDVESSVRPLASAVLNLAPDHLDWHGSMEAYALAKGRIY 253

Query: 235 E 235
           +
Sbjct: 254 Q 254


>gi|239814065|ref|YP_002942975.1| cyanophycin synthetase [Variovorax paradoxus S110]
 gi|239800642|gb|ACS17709.1| cyanophycin synthetase [Variovorax paradoxus S110]
          Length = 855

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 145/365 (39%), Gaps = 48/365 (13%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +LFA    G+ P  ++AVTGT+GK++ A  +  +   SGL +   G T+T   +  D R 
Sbjct: 459 TLFAHGDDGRIP--VVAVTGTNGKTTTARLINHLLASSGLRT---GMTNTDGVYV-DGRQ 512

Query: 163 TTPSPIYLAK-ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--D 218
           T        K A + L    V     E +  G+ +  L   +      TN+G  DH+  +
Sbjct: 513 TDSGDCSGPKSARNVLMHPDVDAAVFEVARGGVLREGLGFDRCQVAVVTNIGSGDHLGLN 572

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y  T +     K  +   + P +  A++ A D     V   A  AGC    + +     H
Sbjct: 573 YITTVEDLAVLKRVIVRNVAP-DGYAVLNAAD-----VNVAAMAAGCPGHVIFFTADRQH 626

Query: 279 LKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGE-------------------FQVYNALVA 318
              V A H  Q + T+ V   D D L    G                    FQV N + A
Sbjct: 627 --PVMATHRAQGKRTVYV---DQDTLVAAEGSWRERIALRDVPITRGGTIGFQVDNVMAA 681

Query: 319 AGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
                A+G+D   +   L         VPGRF  +  + RG  +  DY H ++++  ++ 
Sbjct: 682 VAAAWAVGLDWDTIRSGLASFLNDAAGVPGRFNVM--DYRGATVIADYGHNTDAMRALVS 739

Query: 375 NIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            + T+ +  R +V+ G G  RD   R     +     D+ +  D   R     ++ A + 
Sbjct: 740 AVDTMPANKRSVVISGAGDRRDSDIRDQTAILGQAFDDVILYQDAAQRGRADGEVMALLR 799

Query: 434 HGIPG 438
            G+ G
Sbjct: 800 QGLQG 804


>gi|254435723|ref|ZP_05049230.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
 gi|207088834|gb|EDZ66106.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
          Length = 464

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 134/336 (39%), Gaps = 41/336 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + +G + +VVSSA    +   +      I VV        L   R YG      +AV
Sbjct: 58  PQHV-EGCDVVVVSSAIDEDNTEVSAARGRLIPVVPRAEMLAELMRFR-YG------IAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
            GT GK++  S +  I   + L  +F IG    ++S   ++RL             YL  
Sbjct: 110 AGTHGKTTTTSLIAGILGEANLDPTFVIG--GQVNSIGANSRLGKGE---------YL-- 156

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V       +S  L Q  L  I       TN+  DH+D +        A    F   LP
Sbjct: 157 --VAEADESDASFLLLQPLLAVI-------TNVDADHMDAYGGDFTALKAAFLEFLHHLP 207

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
               A++  DD   +E++      G  VL+ G  +    HL+++     + Q  ++  GK
Sbjct: 208 FYGLAVVCLDDPVLRELLP---GIGRPVLTYGTCKEADYHLRELKQTQGQTQFQVARPGK 264

Query: 299 D--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
           D     +  LPG     NAL A  +   +GI  + +   L+    +  RF+  G   +  
Sbjct: 265 DNWLTVVLNLPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEIATPA 324

Query: 356 GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           G++ +  DY H    L   L+ IR      R++V+F
Sbjct: 325 GKVLLVDDYGHHPRELAATLEAIRAGWPERRLVVIF 360


>gi|189439042|ref|YP_001954123.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum DJO10A]
 gi|227547554|ref|ZP_03977603.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|322689508|ref|YP_004209242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322691463|ref|YP_004221033.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|226711885|sp|B3DQM9|MURD_BIFLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189427477|gb|ACD97625.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum DJO10A]
 gi|227211964|gb|EEI79860.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|320456319|dbj|BAJ66941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320460844|dbj|BAJ71464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 481

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 103/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLC- 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 159 --------------VELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSK 202

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F         AI+Y A DA   E+   A  A GCR   VG+              G  +
Sbjct: 203 VFH----NAKRAIVYNAQDAKVSELAAEAQTAEGCR--KVGFTLEAPQAGQIGIEDGWIV 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + V ++    DF  L    G      V +AL A  L + +G D    L+
Sbjct: 257 DRSGVAGGAVGESVRLAAI-TDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALK 315

Query: 335 HLEKLHVVPGRFEFVGTNS-RGGRI-YVDYAHTSN 367
            L        R E V   +  GG + +VD +  +N
Sbjct: 316 ALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATN 350


>gi|296327764|ref|ZP_06870303.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296155111|gb|EFG95889.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 468

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 16/191 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL 268
           TN+  DH+D H       N K    + +   +  AII  D    KEV+ R          
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIKFICHTQKEAIICLDCENLKEVVTRLPEEKTVTTY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG 326
           S+  +   +  K +  I +++ +      K+   +F   +PGE  + N+L    L    G
Sbjct: 238 SIKDESANVFAKNI-KIEDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVIYLAFKFG 296

Query: 327 IDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +    + E L K      R++ +         G  ++  RI  DYAH    ++  LK I+
Sbjct: 297 VSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKRVRIVDDYAHHPTEIKATLKAIK 356

Query: 378 TITSGRIIVVF 388
           +I + R++ +F
Sbjct: 357 SIDTSRLVAIF 367


>gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 39/223 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  Q G +F+A  G   DGH +  QA   GA A++ S    L           P +V 
Sbjct: 32  DSRRAQQGSLFLAFAGEHVDGHAYAEQAGQAGAAAVLGSRPTPL-----------PTVVA 80

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           ++T+  L   A  + G+  +   +  VTG+ GK+S    +  +   +G          TI
Sbjct: 81  EDTQAALQALAVHVVGRLRDRLTVFGVTGSQGKTSTKDLLAAVLSSAG---------QTI 131

Query: 154 SSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH-VSVEASSHGL-DQHRLDGIKLIAGSFT 210
           ++F   +N L  P        L+ L ++  T  +++E  +  L D   L G  L+A    
Sbjct: 132 ATFGSFNNELGVP--------LTMLRTEATTRFLALEMGARHLGDISELTG--LVAPDIA 181

Query: 211 ---NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              N+G+ H+    +++A   AK  L + L P  + A++ ADD
Sbjct: 182 VVLNVGQAHLGEFGSREAIAKAKGELVQGLAPGGT-AVLNADD 223


>gi|15678558|ref|NP_275673.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621604|gb|AAB85036.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 682

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 69/314 (21%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIYADDAYSKEV-----M 257
           G  TN+ RDH+   +    Y   K  + E     +L  + P +    D   +E      +
Sbjct: 376 GVITNISRDHLSAGRRFSDYIECKGEMVEVAEDLVLNADDPIVASLADGLPRERVVFYGI 435

Query: 258 KRAHNAG-------CRVL---------SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           + + + G       C            ++G+ G +   + +C     Q   +++E     
Sbjct: 436 QSSESGGVVPEGRECPKCGKPLRYTRRTIGHLGDY---QCICGYLRPQPDVMAIEASPGG 492

Query: 302 FLFPL-----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           F   +           PG F VYNAL AA     +G++   ++  LE    VPGRF+ + 
Sbjct: 493 FKLVIGQEMREVRLATPGIFNVYNALAAAATAWTMGLEIDDIVRGLESFKGVPGRFQEL- 551

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGK 404
             S   RI +DYAH    +  +++++R    GR+IVV       G  GDR+         
Sbjct: 552 --SESPRIILDYAHNPAGVRAVMQDLR--GKGRLIVVNTVASESGIDGDRE--------- 598

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIPGFIEKGNRI---------EAIRTAIE 454
           IA  L D  +V   +  +     I  E  +H     +  G            EA+R A+E
Sbjct: 599 IAAILKDADVVIPASYAARRASDILGERAVHIGSSRMRAGGGTLGASREQVAEAVRKALE 658

Query: 455 MLNKQDVLVVAGKG 468
           +    D +++ G+G
Sbjct: 659 LAGPDDTVLIIGEG 672



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG F + NAL A  + + +G D   +   +E    + GRFEF+     G R+Y+D AH 
Sbjct: 12  VPGIFNIENALAAITVALILGFDMEDIKRSIEDFRGIRGRFEFI-DEVDGVRVYMDAAHN 70

Query: 366 SNSLEMILKNIRTITSGRIIV 386
             S+E + + +     GR+IV
Sbjct: 71  PESMEKLFEGME--FQGRLIV 89


>gi|46191054|ref|ZP_00120691.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Bifidobacterium longum DJO10A]
          Length = 474

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 103/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 93  PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLC- 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 152 --------------VELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSK 195

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F         AI+Y A DA   E+   A  A GCR   VG+              G  +
Sbjct: 196 VFH----NAKRAIVYNAQDAKVSELAAEAQTAEGCR--KVGFTLEAPQAGQIGIEDGWIV 249

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + V ++    DF  L    G      V +AL A  L + +G D    L+
Sbjct: 250 DRSGVAGGAVGESVRLAAI-TDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALK 308

Query: 335 HLEKLHVVPGRFEFVGTNS-RGGRI-YVDYAHTSN 367
            L        R E V   +  GG + +VD +  +N
Sbjct: 309 ALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATN 343


>gi|314933359|ref|ZP_07840724.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
 gi|313653509|gb|EFS17266.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 123/282 (43%), Gaps = 43/282 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+ VTGT+GK++V S +  + ++S ++    G    ++S  AQ+ +    +  YL   LS
Sbjct: 113 IIGVTGTNGKTTVTSLIGDMFKKSIITGRLSGNIGYVASKVAQEAK----ADEYLITELS 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G+     E   H         I +I    TN+   H+DYH++ + Y NAK ++++
Sbjct: 169 SFQLLGIN----EYKPH---------IAII----TNIYSAHLDYHESLENYQNAKKQIYK 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTI 293
                +     Y    Y +  +    N   + L    Q +   I++K    + N  ++  
Sbjct: 212 NQTEDD-----YLICNYHQRHLIETENLKAKTLYFSTQQEVNGIYIKDGFIVFNGVRI-- 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +  KD      LPGE  + N L A    I  G+    +++ L     +  R +++GTN 
Sbjct: 265 -INVKD----LVLPGEHNLENILAAVLAAILAGVPVKAIVDSLTTFSGIDHRLQYIGTN- 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           R  + Y D +  +N+L         + S +  +++ CGG DR
Sbjct: 319 RTNKYYND-SKATNTLATQF----ALNSFQQPIIWLCGGLDR 355


>gi|297569886|ref|YP_003691230.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
 gi|296925801|gb|ADH86611.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
          Length = 502

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 142/365 (38%), Gaps = 50/365 (13%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT---------IRSNTPILVVDN 97
           VA+ G+  D  ++ P +       I V   Y  Q+ + +         IR++ P  +   
Sbjct: 55  VAVSGS--DQKVYPPMSDYLAGLGIEVQEGYGPQNLAGSPDLVIVGNVIRADNPEALELG 112

Query: 98  TRK--FLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTI 153
            R+  +LS   A R Y       L V GT GK++ +S +  +   +GL   F IG    +
Sbjct: 113 RRRLPYLSFPQALRHYFLAGRRSLVVAGTHGKTTTSSLLATMLDHAGLDPGFMIG--GIV 170

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSS-----QGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +F + +R T   P ++++   Y ++         H + E          L G++     
Sbjct: 171 QAFGRSSR-TGGGPFFVSEGDEYDTAFFDKGPKFLHYAPEVCI-------LTGVEF---- 218

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
                 DH D +    A   A  RL   L+P +   + + DD   +E++  A    C VL
Sbjct: 219 ------DHADIYADLAAVKTAFARLVA-LMPPQGRLVAFVDDPVVRELVAVAP---CPVL 268

Query: 269 SVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA 324
             G          L K+         T+  +G+ F +F  P+PG     NAL    +   
Sbjct: 269 GYGEGAGEGADWRLDKLTVSPGGTGFTVLRQGELFGEFFSPMPGRHNALNALAVIAVLDH 328

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-R 383
           +G+  A +   L     V  R E  G    G  +  D+AH   ++   L  ++    G R
Sbjct: 329 LGVPPAEIAAGLAAFTGVRRRQEVRGEVG-GVTVIDDFAHHPTAVRETLAALKAAYPGRR 387

Query: 384 IIVVF 388
           ++ VF
Sbjct: 388 LVAVF 392


>gi|312881956|ref|ZP_07741713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370392|gb|EFP97887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 450

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 114/280 (40%), Gaps = 35/280 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK++ AS +  I ++ G    F +G    + +F    RL   S  ++ +A  
Sbjct: 105 VLAVSGTHGKTTTASMLTWILEKCGYEPGFLVG--GVLGNFGVSARLGK-SVFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    I        NL  DH D     +A      R F 
Sbjct: 162 YDSA------FFDKRSKFVHYHPKTLI------MNNLEFDHADIFDDLEAI----KRQFH 205

Query: 236 ELL---PKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQ 290
            L+   P     +    D   K+V+ R    GC     S G  G +   K+     +  Q
Sbjct: 206 HLVRTVPSVGRILFPQQDQEIKDVLSR----GCWSESESSGIGGDWQAEKQHA---DGSQ 258

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  EGK    + + L G   + NAL+A      +G++     E L+       R E  
Sbjct: 259 FAVFFEGKKVASVNWNLIGNHNINNALMAIAAARHVGVEPLHACEALDTFINTKRRLELK 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
           G    G  +Y D+AH   ++E+ L+++R   SG RII V 
Sbjct: 319 GM-VNGVEVYDDFAHHPTAIELTLESLRNKASGKRIIAVL 357


>gi|290969172|ref|ZP_06560697.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780678|gb|EFD93281.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 464

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 168/421 (39%), Gaps = 75/421 (17%)

Query: 61  PQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           P+ +A  AE ++VS+A      ++ A    + PIL      +  +L     +GK     +
Sbjct: 63  PENLAD-AETVIVSTAIHPDNAEWQAARERHLPIL-----HRSDALVHIMSWGK----AI 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALS 175
           AV G  GK++ +S + Q+     L      PT  I     +   N      P  +A+A  
Sbjct: 113 AVAGAHGKTTTSSMLGQVFIEGRLH-----PTIVIGGEVDYLHSNSTLGTGPYVIAEA-- 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                       E+    L +H    +       TN+  DH+D++ +      A  +  +
Sbjct: 166 -----------DESDGTFLKEHPAIAV------VTNIDADHMDHYGSMAHVIAAFKQFIQ 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKK---VCAIH 286
            L P++  A++  D+   + + + A   G   +S G      Y  K ++ K+      ++
Sbjct: 209 RLDPQDGMAVLCFDN---EHIRRLASQVGRTYISYGFAEDAEYTAKNLYYKEGKHYFDVY 265

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +Q +  +V          +PG   V NAL    + +  G+  A +   L + H    RF
Sbjct: 266 RRQVLLGTV-------CLQVPGRHNVLNALATIAVSLHCGLPFAEIAAALCRFHGAKRRF 318

Query: 347 E---FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIM 402
           +   +VGT     R+  DYAH    ++  L     + + R++ +F      R Q      
Sbjct: 319 QTKGYVGTI----RVVDDYAHHPTEIKATLAAAGDMGTHRVVCLFQPHRYSRTQLLLEQF 374

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDV 461
           G  A   ADI +VTD     EDP       + G+ G  I    + +  ++A+ +  K+D+
Sbjct: 375 GT-AFSNADILVVTDIYGADEDP-------VPGVTGRLIVDKIKEKTGKSAVYIPRKEDI 426

Query: 462 L 462
           L
Sbjct: 427 L 427


>gi|269468108|gb|EEZ79818.1| UDP-N-acetylmuramate-alanine ligase [uncultured SUP05 cluster
           bacterium]
          Length = 471

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 109/294 (37%), Gaps = 63/294 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S +  I     LS  ++ PT  I                       L
Sbjct: 115 IAVAGTHGKTTTTSLIAHI-----LSEARLDPTYIIGGI--------------------L 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDG----IKLIAGSFTNLGRDHI-----DYHQTQQAYFN 228
           +S G+     E+     +    D     ++ +    TN+ +DH+     DY   + A+ +
Sbjct: 150 NSSGINAKLGESDYLIAEADESDASFLHLQPMLSVITNIDQDHMSTYGNDYQNLKDAFVS 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----------NAGCRVLSVGYQGKFIH 278
                F   LP     ++  DD  + ++M   H              R  ++   G  +H
Sbjct: 210 -----FTSNLPFYGACVLCMDDVGATDIMNNIHRPLITYGFDSKVDIRAKNIKQHGMQMH 264

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              VC  +NK           F     L G+  + N L A  +   + I  + +   L  
Sbjct: 265 FDVVCDKYNKP----------FSVELNLIGKHNILNTLAAIAIACELKIKVSAIQSALNN 314

Query: 339 LHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
              V  R E  GT   N++   ++ DY H  N +  + ++++ T  + R++V+F
Sbjct: 315 FSGVARRLEHHGTLNINNKQVLLFDDYGHHPNEINAVFESLQNTYPNKRLVVIF 368


>gi|225850494|ref|YP_002730728.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
 gi|254766015|sp|C0QPY2|MURC_PERMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225645302|gb|ACO03488.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYA 363
           +PG+  VYNAL A  + + +G+   ++ E LE       RFE        G + V  DYA
Sbjct: 270 IPGKHNVYNALAAISISVELGVPFCVIKEALENFKNANRRFEI----KYDGSVTVIDDYA 325

Query: 364 HTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNP 420
           H    ++  L   R +  G RII VF     R      +      + ++ DI ++T+  P
Sbjct: 326 HHPTEIKATLSATREMFDGRRIIAVFQP--HRYSRTFSLYDHFVRSFNIPDITVITEIFP 383

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGHET 471
             E P      EK+ ++I       +  G  ++     ++ +L K DVL++ G G+ T
Sbjct: 384 AGESPIDSVNGEKLSSDIKKETGKTVLYGEDLQKTFNILKNILKKDDVLLILGAGNVT 441


>gi|257068262|ref|YP_003154517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium
           faecium DSM 4810]
 gi|256559080|gb|ACU84927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium
           faecium DSM 4810]
          Length = 503

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A R+        LAVTGT+GK++  + ++ I  R+GL +   G                
Sbjct: 122 LARRMQAADGPAWLAVTGTNGKTTTVTMLESILLRAGLRAVACGNVGL------------ 169

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
             P+  A     L   G   +++E SS  L  H    +   A +  N+  DH+D+H   +
Sbjct: 170 --PVIEAA----LDPAGFDVLALELSSFQL--HWTQHLDCEAAAVLNVSDDHLDWHGGAE 221

Query: 225 AYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVG 271
           AY  AK R++E +      A IY  AD    + V +     G R + +G
Sbjct: 222 AYAAAKGRIYEGV----RTACIYNVADPTTLRLVEEADVREGARAIGIG 266


>gi|297559869|ref|YP_003678843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844317|gb|ADH66337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 482

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 115/292 (39%), Gaps = 33/292 (11%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR    G +FVA+ G + DGH F   A+A GA A +VS         A       +  +
Sbjct: 34  DSRQAVPGALFVALGGERVDGHDFAASAVADGAAAALVSRPVDAPHLLAEGGDEGVVAAL 93

Query: 96  DN-TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STI 153
               R      +    G     ++AVTG+SGK++    + Q+  R       +GPT +  
Sbjct: 94  TRLARHVARELSDPRRGAERAEVVAVTGSSGKTTTKDLIAQVVAR-------MGPTVAPA 146

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKLIAGSFTN 211
            SF  +N +  P  +  A         G  ++ +EA++ G+    H         G   N
Sbjct: 147 GSF--NNEIGHPLTVLRA-------DTGTRYLVLEAAARGIGHIAHLCGVAPPRIGVVLN 197

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------AIIYADDAYSKEVMKRAHNAGC 265
           +G  H+     + A   AK  L E L P  +       A++ ADD     +  R      
Sbjct: 198 VGSAHMGEFGDRDAIAKAKGELVEALPPGAADRGAGGVAVLNADDPRVNAMAARTR---A 254

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFLFPLPGEFQVYN 314
           RV++ G  G+   ++    +  +      T+ + G+       L G  QV+N
Sbjct: 255 RVVTYGL-GEDATVRATDVVMRETGAPSFTLHLAGRTARVELALVGAHQVHN 305


>gi|172040884|ref|YP_001800598.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium urealyticum
           DSM 7109]
 gi|229486485|sp|B1VHC3|MURC_CORU7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171852188|emb|CAQ05164.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium urealyticum
           DSM 7109]
          Length = 487

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 28/203 (13%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGC 265
            TN+  DH+DY+ T++AY    + +F+E   K +P    +   DD  +  +  R   AG 
Sbjct: 188 ITNIEPDHLDYYGTEEAY----VAIFDEFATKVTPGGYLVCCLDDPGAAALAARVRAAGT 243

Query: 266 --RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY---------- 313
              VL  G +        + A    +++     G      F LPG+ + Y          
Sbjct: 244 APTVLGYGSRAAADQHPDIPAAAIIEEMIPDARGTAAKVRFNLPGQEERYEDIRVAIPGA 303

Query: 314 ----NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N + A      +G D   V+  +     V  RFE+ G  + G R+Y DYAH    +
Sbjct: 304 HMTLNGVAAITGGALLGADLEKVIAGVADFDGVRRRFEYHG-EAGGVRVYDDYAHHPTEV 362

Query: 370 EMILKNIRTIT----SGRIIVVF 388
             +L   + +     +GRII VF
Sbjct: 363 TAVLTAAKELVEATDAGRIIAVF 385


>gi|118581691|ref|YP_902941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
 gi|158512568|sp|A1AU63|MURD_PELPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118504401|gb|ABL00884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
          Length = 446

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 108/272 (39%), Gaps = 41/272 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GK++  +    I  ++G  +F  G             +  P    L + L  
Sbjct: 110 LVAITGTNGKTTATTITGDIFIKNGFRTFVGG------------NIGNP----LIELLE- 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S++ V  V  E SS  L+  R    +    +  NL  DH+D + + + Y  AK+R+FE 
Sbjct: 153 -SAEPVERVVAEISSFQLEWIR--AFRPAVAALLNLSEDHLDRYASYREYIEAKLRIFEN 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-------QGKFIHLKKVCAIHNKQ 289
               +  A++ ADD    E     H+ G R     +       +G F     +   HN +
Sbjct: 210 QTADDY-AVVNADDELVME-----HSRGLRACLFPFSRKQELDEGIFHREGLIVWRHNGR 263

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +      G      F L G   + N + A    + +       L  + +   +  R EFV
Sbjct: 264 EERFPTAG------FRLQGVHNLENIMAALACSLLLECRPTESLACVREFEALHHRMEFV 317

Query: 350 GTNSRGGRIYVDYAHTS-NSLEMILKNIRTIT 380
                G R Y D   T+  S+E  L++   IT
Sbjct: 318 -RELNGVRWYEDSKATNVGSVEKALESFDAIT 348


>gi|254510884|ref|ZP_05122951.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
 gi|221534595|gb|EEE37583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
          Length = 469

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 132/327 (40%), Gaps = 48/327 (14%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRS 140
           +A + +  P  V ++   F   FA   +  +  P  ++AVTG++GKS+ A+ +  I   +
Sbjct: 93  AAALEAGVP--VDNDIGLFFRSFAGPEWHNYDTPPRVIAVTGSNGKSTTAALIHHILTEA 150

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRL 199
           G S+   G                     + + +  +   G   V V E SS+  +  R 
Sbjct: 151 GRSAQLAG--------------------NIGRGVLDIDPGGDGSVVVLELSSYQTELAR- 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +      FTNL  DH+D H     YF AK RLF E  P    A+I  D+A    +  +
Sbjct: 190 -ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDR--AVIGIDEAEGAFLAGQ 246

Query: 260 AHNAGC--RVLSV-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                   RV+ V       G   +    K   + + K +   +++ +D   +  LPG  
Sbjct: 247 LAEGPSDDRVIRVSVARKLTGPGWQVFARKGFLSEYRKGRQAGAIDLRD---IRGLPGAH 303

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NA  A   C A+G+   ++ + L     +P R + +     GG  YV+ +  +N ++
Sbjct: 304 NHQNACAAYAACRALGLAPRVIEDALHNFPGLPHRSQIIA--EAGGVTYVNDSKATN-VD 360

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQG 397
             LK +      R I    CGG   +G
Sbjct: 361 SALKALNAFGKIRWI----CGGLEKEG 383


>gi|199598809|ref|ZP_03212221.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
 gi|199590314|gb|EDY98408.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
          Length = 462

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 48/370 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR ++ G +FV + G + DGH FIP A A GA A  V+  +        + +  P 
Sbjct: 29  VAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAAGAVATFVAEDH------LPMTTKLPT 81

Query: 93  LVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           LVV +    +   A   L  K    ++A+TG++GK++       I       + Q     
Sbjct: 82  LVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVK 135

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA---- 206
           T  ++  +N +  P        ++ LS +  T V V     G+D+  +L  +  +A    
Sbjct: 136 TPDNY--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSSLAEPDV 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEVMKRAH 261
              T +G  HI++ +T+    +AKM + + L  KE    I+  D     + +K+V +   
Sbjct: 184 AVITMIGEAHIEFFKTRAKIADAKMEITDGL--KEDGTFIFNGDEPLLVSRAKQVTQSQE 241

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G    +      F H   +    N  + T+  +  +  F  P+ GE+ V NAL A  +
Sbjct: 242 TFGLHPENT----LFAH--SISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
                +    + + L    V   R +++     G +I  D Y     +++ ++ +     
Sbjct: 295 GRRFHVKPEAMQKALAHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFQ 353

Query: 380 TSGRIIVVFG 389
           T+GR I V G
Sbjct: 354 TAGRHIAVLG 363


>gi|158426180|ref|YP_001527472.1| UDP-N-acetylmuramate--L-alanine ligase [Azorhizobium caulinodans
           ORS 571]
 gi|172047924|sp|A8HZ95|MURC_AZOC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158333069|dbj|BAF90554.1| UDP-N-acetylmuramate-alanine ligase [Azorhizobium caulinodans ORS
           571]
          Length = 467

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 132/340 (38%), Gaps = 62/340 (18%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GAE +VVSSA         I+ + P L+    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GAEVVVVSSA---------IKRDNPELLAARAKRLPVVRRAEMLAELMRLKSCVAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +  + G     I     I+++  + RL                      
Sbjct: 117 GKTTTTSLVATLLDKGGFDPTVIN-GGIINAYGTNARLGAGD-----------------W 158

Query: 185 VSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQT----QQAYFNAKMRLFEELL 238
           + VEA     D+     +KL A     TN+  +H+D+ +T    Q+A+     R F E +
Sbjct: 159 MVVEA-----DESDGTFLKLPAEVAIITNIDPEHLDHFKTFDKVQEAF-----RTFVENV 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAIHN 287
           P    A++  D    + ++ R  +           A  R++ V  +G       V     
Sbjct: 209 PFYGFAVMCIDHPVVQALVGRIEDRRIITYGENPQADVRLVDVDLRGGITRFGVVF---- 264

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +    + E +      P+PG+    NA  A  +   + +    ++E +     V  RF 
Sbjct: 265 -RDRAGTAEHRIDGLKLPMPGKHNALNATAAIAVARELRVPDDRIIEAIGGFGGVKRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             G   +G  I+ DY H    +  +L+  R  T G++I V
Sbjct: 324 RTG-EWKGATIFDDYGHHPVEISAVLRAARAATEGQVIAV 362


>gi|66047333|ref|YP_237174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258040|gb|AAY39136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 456

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 148/382 (38%), Gaps = 43/382 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V              +  P 
Sbjct: 28  VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 79

Query: 93  LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           LVV +TRK L+   +     +   P  + AVTG+SGK++V   +  I +  G      G 
Sbjct: 80  LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +N L  P  + L  A  Y S+     + + AS  G   + +   K      
Sbjct: 138 L--------NNELGVPLTL-LELAPEYTSAV----IELGASRVGEIAYTVSLAKPHVAMI 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G  H+           AK  + E L    +  +   D A+     KRA N      +
Sbjct: 185 TNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIW-RKRAGNRNILTFA 243

Query: 270 VG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +       Y  +     + C   N     +       + L    G   V NAL AA    
Sbjct: 244 LTDSAADVYASELSRDARGCPAFNLNS-PLGTARVQLNLL----GTHNVSNALAAAAAGC 298

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G+    ++  L  +  V GR       S G R+  D  + + +      +I T  +GR
Sbjct: 299 AMGVPLEGIVTGLNNVQPVKGR-AVAQIASNGTRVIDDTYNANPASINAAVDILTGFTGR 357

Query: 384 IIVVFG----CGGDRDQGKRPI 401
            ++V G     G   +QG R +
Sbjct: 358 TVLVLGDIGELGDWAEQGHREV 379


>gi|296394963|ref|YP_003659847.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
 gi|296182110|gb|ADG99016.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
          Length = 475

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 164/438 (37%), Gaps = 75/438 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           G  A+VVS A         I  + P LV    R    L+  ++     E    + V+GT 
Sbjct: 67  GPTAVVVSQA--------AIPEDNPELVEARKRGVPVLYRPQVLAALMEGSTRVLVSGTH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S      Q++GL            SFA    L        A   ++  S     
Sbjct: 119 GKTTTTSLTVAALQQAGLDP----------SFAVGGELGE------AGTNAHQGSGNAFV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              + S   L +++ D     A   TN+  DH+D+  + +AY     +   ++ P  S  
Sbjct: 163 AEADESDGSLLRYQPD-----AAVVTNVEADHLDHFGSSEAYVAVFDQFVRQIAPGGS-L 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFI--HLKKVCAIHNKQQVTISVE-G 297
           I+  DD  +  +  RA  AG RVL  G      G  +   L          ++T+  E G
Sbjct: 217 IVDVDDPGAAALGSRAAAAGTRVLGYGSNQAPAGVLLAARLADWSPHGEGARLTVVFEPG 276

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +  F   +PG     NAL A    +  G      +  +     V  RF+  G   RG R
Sbjct: 277 GERVFSIGVPGRHMARNALGAVLAAVFAGASLDGAISGVSAFTGVRRRFQLKGAE-RGVR 335

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-------SGRIIVVFGCGGDRDQGKRPIMGK------ 404
           ++ DYAH    +   L   R +        SGR++VVF          +P M        
Sbjct: 336 VFDDYAHHPTEVAATLAGARALVTDPDGSCSGRLVVVF----------QPHMYSRTRLFA 385

Query: 405 ----IALDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIPG-FIEKGNRIEAIRTAIE 454
                AL+ AD  +V D     E PE      + A+ +  +P  F+   + +   +TA  
Sbjct: 386 TEFAAALEAADEVLVLDVYGAREKPEAGITGALIADQVRAVPARFVPMFSSVA--QTAAS 443

Query: 455 MLNKQDVLVVAGKGHETV 472
           +    DV++  G G  T+
Sbjct: 444 LAKPGDVVITMGAGDVTL 461


>gi|254462310|ref|ZP_05075726.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           HTCC2083]
 gi|206678899|gb|EDZ43386.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 471

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 138/365 (37%), Gaps = 86/365 (23%)

Query: 53  KEDGHLFIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPIL---------VVDNTRKF 101
           K  GH+F+ Q     + AE +V+SSA         I+S  P L         VV      
Sbjct: 60  KLGGHIFVGQKAENLESAEVVVISSA---------IKSGNPELDEARRRGLPVVRRAEML 110

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFA 157
             L   +L        +AV GT GK++  + V  +     L + +  PT      I ++ 
Sbjct: 111 AELMRLKLN-------IAVAGTHGKTTTTTMVATL-----LDAGKFDPTVVNGGIIHAYG 158

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            + R+                 QG   V VEA       +RL     I    TN+  +H+
Sbjct: 159 SNARM----------------GQGEWMV-VEADESDGTFNRLPATIAI---VTNIDPEHM 198

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRAHNAGCRVL 268
           ++  T++      +  F   +P    AI   DDA           + V+    NA   V 
Sbjct: 199 EHWGTEENLHQGFLD-FTSNIPFYGLAICCTDDADVQTLVGKLTDRRVVTYGFNAQADVR 257

Query: 269 SVG--YQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +VG  Y+G      IHL+      N+ QV   +EG       P+PG+  V NAL A  + 
Sbjct: 258 AVGLHYKGGVAMFDIHLQ------NEDQV---IEGCSL----PMPGDHNVSNALSAVAVA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+    +   L     V  RF  V     G  I  DY H    +  +LK  R  + G
Sbjct: 305 RHLGMSGDEIRRALAAFGGVNRRFTKV-AEIDGVTIIDDYGHHPTEISAVLKAARQASEG 363

Query: 383 RIIVV 387
           R+I +
Sbjct: 364 RVIAI 368


>gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485]
 gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485]
          Length = 811

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            + S DSR    G  F+AI   + DGH +IP A+A GA  ++        D       N 
Sbjct: 25  TDWSYDSRLTAPGECFIAIRTARADGHDYIPAALAAGARGVLCRRPPHAAD-------NA 77

Query: 91  PILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKS----SVASFVQQIC 137
            ++V  + +  L  +AS RL   HP  ++AVTG  GK+    ++A+ + Q+ 
Sbjct: 78  TVIVCSDPQTVLLRWASNRLRALHP-TVVAVTGGIGKTLARRAIAAVLTQLA 128


>gi|125717546|ref|YP_001034679.1| D-Ala-D-Ala adding enzyme [Streptococcus sanguinis SK36]
 gi|125497463|gb|ABN44129.1| D-Ala-D-Ala adding enzyme, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 157/388 (40%), Gaps = 74/388 (19%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-----AEAIVVSSAYS 78
           Q+    +     DSR I++G +FV + G + DGH FI  A AQG     +E  V   AY 
Sbjct: 20  QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEGAY- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137
                         ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 78  --------------ILVDDVLTAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                 +  G  + +IG   T+    +D                 +   G  H+      
Sbjct: 124 TTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD 
Sbjct: 166 ---DIHLLSNLAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD- 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FP 305
               +++     A C+++  G     I L ++     +++ ++S E    +FL      P
Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLP 268

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + G++   NA++AA   +  G+    + +   +L +   R E+    + G  I  D Y  
Sbjct: 269 VTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNA 327

Query: 365 TSNSLEMILKNIRTITS---GRIIVVFG 389
              ++ +IL+   TI +   GR + V  
Sbjct: 328 NPTAMRLILETFSTIPANPGGRKLAVLA 355


>gi|170720131|ref|YP_001747819.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida W619]
 gi|229620051|sp|B1J3L3|MURC_PSEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169758134|gb|ACA71450.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida W619]
          Length = 482

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 168/429 (39%), Gaps = 68/429 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 73  AAHADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  
Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
           Q +  V     +        D +    G F  L +  +++      Y  A M L      
Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234

Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+LP+ + P + Y    + +E   RA N    V   G Q  F  L++     +++ + +S
Sbjct: 235 EILPQVKRPTVTYG---FCEEADIRAIN----VSQKGMQTHFTVLRR-----DREPLEVS 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353
           V          +PG   V NAL    +    GI    +++ L     V  RF+  G    
Sbjct: 283 VN---------MPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQGVGRRFQVYGELPV 333

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            GG + +  DY H    +  ++K +R    S R+++V+     R    R +       L 
Sbjct: 334 EGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQP--HRYSRTRDLYDDFVQVLG 391

Query: 411 D--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           D  + ++ +  P  E+  P     ++ H I       P +IE+G  +  +     +L   
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPL--VKPLLRAG 449

Query: 460 DVLVVAGKG 468
           D+L+  G G
Sbjct: 450 DILLCQGAG 458


>gi|310765084|gb|ADP10034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
           Ejp617]
          Length = 438

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 40/237 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A    L  P+ +Y+ +  S+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WQVGTGGNIGLPAL-TLLQQPAQLYVLELSSF 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S+ A+               A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 163 ---QLETTSSLHAA---------------AATILNVTEDHMDRYPLGMQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                 +  ++ ADDA +  V      A  R +S G      HL +      +    + V
Sbjct: 205 ----NATVCVVNADDAMTMPV----RGADARCVSFGADVGDYHLTR-----QQGSTWLRV 251

Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+   + D +  L G+    NAL A  L  A+G+  A  L+ L   + +P RF+ V
Sbjct: 252 QGEKVLNTDEMH-LVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQRV 307


>gi|312885132|ref|ZP_07744816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367205|gb|EFP94773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 441

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 141/342 (41%), Gaps = 55/342 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V  +  Q    +GL              A    +  P       AL  
Sbjct: 112 VIAITGSNGKSTVTDWTGQALSAAGLD------------VAVGGNIGVP-------ALDL 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q   +V +E SS  L+      +K     F NL  DH+D +++   Y NAK+R+F+ 
Sbjct: 153 LQHQADIYV-LELSSFQLETTS--SLKSKVAVFLNLSEDHMDRYRSMDDYRNAKLRIFD- 208

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISV 295
                   I+ ADD  +  +   +           Y    +  K   A+  +  V   ++
Sbjct: 209 ---NADVRIVNADDIATYPLKDSS-----------YLEFSLDKKTDFAVTTQDDVEFFTL 254

Query: 296 EGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +GK         L G   V N LV   L  ++G+D    L  ++    +  R + V  N 
Sbjct: 255 QGKKVLSTSEISLVGRHNVSNCLVVLALLHSVGVDIERALPVIKSYSGLTHRCQVVLDN- 313

Query: 354 RGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALD 408
            GG  +V+ +  +N  S +  L  +R    G++ ++ G    G D  +   PI+  + + 
Sbjct: 314 -GGIKWVNDSKATNLASTKAALTGLR--MEGKLFLLVGGVSKGADFSE-LAPILKNLNVQ 369

Query: 409 LA----DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           L     D       +P ++  E I  EIIH I G +++G+ +
Sbjct: 370 LCCFGQDGDAFMSLHPSAKRFESIN-EIIHWISGQMKRGDVV 410


>gi|269137993|ref|YP_003294693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|267983653|gb|ACY83482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|304558040|gb|ADM40704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Edwardsiella tarda
           FL6-60]
          Length = 438

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 46/267 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I                   ALS 
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIG----------------VPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++  A +  N+  DH++ Y    Q Y  AK+R++E
Sbjct: 148 LKHECRLYV-LELSSFQLET--TSSLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +    H A  R +S G      HL       N+QQ  I +
Sbjct: 205 ----NARTCVVNADDALTMPI----HGADTRCVSFGVDVGDYHL-------NRQQGEIWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +    L      L G     NAL A  L  A+G+  A  L  L     +  RF+ V  
Sbjct: 250 RVRGEKILNTKEMQLTGMHNYTNALAALALADAVGLPRASSLRALTTFRGLAHRFQLVLE 309

Query: 352 NSRGGRIYVDYAHTSN--SLEMILKNI 376
           +S  G  +++ +  +N  S E  LK +
Sbjct: 310 HS--GVRWINDSKATNVGSTEAALKGL 334


>gi|332528822|ref|ZP_08404796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
 gi|332041681|gb|EGI78033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
          Length = 496

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 10/116 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++  V +DSR ++ G +FVA+ G++ DG+ F+ QA A GA A + S A +L+      
Sbjct: 35  EVRVRRVHTDSRTLREGDLFVALRGDRFDGNAFLAQARAAGAVAALCSDAAALR------ 88

Query: 87  RSNTPILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           ++  P +VV +TR+ L   A      +   H   ++AVTG++GK++V      I +
Sbjct: 89  QAQLPGIVVSDTRRALGQLAQGWRQHIARGHRLPLIAVTGSNGKTTVTQMTAAILR 144


>gi|315186405|gb|EFU20165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 470

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 146/385 (37%), Gaps = 65/385 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA----T 85
           I  V+ DSR  + G +FV + G   DGHL++ +A  +GA A +V      +  SA     
Sbjct: 32  IRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAFQRGASAALVQETVFSEAGSALLKHV 91

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQ--------QI 136
           +++   +LVV +T + L              I + VTG+SGK+S    ++        ++
Sbjct: 92  VQTRGALLVVPDTLEALQTLGEWYLSSLRVPIRIGVTGSSGKTSTKEMLRAVLSLHYSRV 151

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  + +IG   +I    ++  +              +   G+ HV           
Sbjct: 152 WATEGNLNSEIGVPLSILGIREEPEVV-------------ICEMGIDHVG---------- 188

Query: 197 HRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             +D +  I        T +G  H++   T++     K ++F       S   I  D+ +
Sbjct: 189 -EMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSS-FDDRSVGFIPEDEEF 246

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLP 307
                         VL  G++G F+          +   +  +EG     K         
Sbjct: 247 ------------FHVLVEGWRGTFLPYGPATVEGFEGWESRGLEGVILLWKGLRIPLQGY 294

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  V NAL    L   +G+  ++V E L+    + GR E       GG  ++   + +N
Sbjct: 295 GEHMVRNALGVIRLSDHLGVPPSMVAEGLQAYRPLFGRGEL---KEIGGVWFLVDCYNAN 351

Query: 368 --SLEMILKNIRTITS-GRIIVVFG 389
             S+   L+ +R +    R IVV G
Sbjct: 352 PESMRASLEGVRGLKGVRRRIVVLG 376


>gi|312132482|ref|YP_003999821.1| murd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773410|gb|ADQ02898.1| MurD [Bifidobacterium longum subsp. longum BBMN68]
          Length = 481

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 103/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLC- 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 159 --------------VELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSK 202

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F         AI+Y A DA   E+   A  A GCR   VG+              G  +
Sbjct: 203 VFH----NAKRAIVYNAQDAKVSELAAEAQTAEGCR--KVGFTLEAPQAGQIGIEDGWIV 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + V ++    DF  L    G      V +AL A  L + +G D    L+
Sbjct: 257 DRSGVAGGAVGESVRLAAI-TDFAHLAEPDGSLYPHLVADALTALALVLGLGADRDTALK 315

Query: 335 HLEKLHVVPGRFEFVGTNS-RGGRI-YVDYAHTSN 367
            L        R E V   +  GG + +VD +  +N
Sbjct: 316 ALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATN 350


>gi|307944896|ref|ZP_07660233.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseibium sp.
           TrichSKD4]
 gi|307771820|gb|EFO31044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseibium sp.
           TrichSKD4]
          Length = 466

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 36/244 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+  S +  + + +GL + Q+G    +        L    P +  +    
Sbjct: 116 VVAITGTNGKSTTTSLIAHLLKSAGLDT-QMGGNIGVP-------LLELEPFHAER---- 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  H  +E SS+ +D      +    G   NL  DH+D H + + Y   K    E 
Sbjct: 164 -------HFVIECSSYQIDL--APSLDPTIGIHMNLSPDHLDRHGSLENYAAIK----ER 210

Query: 237 LLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQ 290
           L+     AI+  DD+ S ++  R   A    CR+ S  ++   G + H  K+   ++  Q
Sbjct: 211 LVAGAKVAIVGVDDSLSTQIADRLELARKPVCRI-SGAFELPDGVYAHQGKLFEAYDGAQ 269

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             + +     D +  L G+    NA  A      + +D A +L+ +     +  R E VG
Sbjct: 270 RKVGI----LDGIDSLRGDHNGQNAAAAFAALRVLKVDEAEILKGMADFPGLHHRMEVVG 325

Query: 351 TNSR 354
            + R
Sbjct: 326 RSGR 329


>gi|225023745|ref|ZP_03712937.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
 gi|224943627|gb|EEG24836.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
          Length = 464

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 111/261 (42%), Gaps = 41/261 (15%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGW-----IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
            P       I  V +DSR   A       +FVA+VG+K D H F+P  +AQGA A+V   
Sbjct: 19  LPAPQHNLPIRRVITDSRQAAAADERGTDLFVALVGDKHDAHDFVPAVLAQGALALV--- 75

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S QD    I  +  + V D      +L A+     +P  +L +TG+SGK++V   +  
Sbjct: 76  --SRQD---CIALSGSLPVADTLAALQTLAAAWREAVNP-MVLGITGSSGKTTVKEMLAA 129

Query: 136 ICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I +R      Q G  + +++    +N +  P  +     L+    Q    + +  +  G 
Sbjct: 130 ILRR------QFGEAAVLATAGNFNNHIGLPLTL-----LALRPQQRYAVIEMGMNHFG- 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYH-----QTQQAYFNAKMRLFEELLPKESPAIIYAD 249
               LD +  IA     L  + +  H             AK  ++   LP+   A+I A+
Sbjct: 178 ---ELDALTRIACPDAALVNNALRAHIGCGFDGVGDIARAKSEIYRG-LPESGTALIPAE 233

Query: 250 DAYSKEVMKRAHNAGCRVLSV 270
           D Y+ EV +    A CR L++
Sbjct: 234 DEYA-EVFR----AACRALNL 249


>gi|42520363|ref|NP_966278.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|48428303|sp|P61683|MURC_WOLPM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|42410101|gb|AAS14212.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 498

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 128/340 (37%), Gaps = 48/340 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTG 122
           G  A  +S A  +   SA    N  ++   N  K +     + A  + GK+   ++AV+G
Sbjct: 77  GHNANNISQAQIVVHSSAIEFDNVELIAAKNNNKTVLHRSDILAEIMKGKY---VIAVSG 133

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++  + +  I   SG     I  T T+       +    S   L  + ++L     
Sbjct: 134 SSGKTTTTAMIASIFDHSG-----IDATVTVGGILNSYK----SNFKLGGSDTFL----- 179

Query: 183 THVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +EA     D+     +K+ A     T++  DHIDY+ T     NA  +        
Sbjct: 180 ----IEA-----DESDGTMLKIPAKIAVITSINNDHIDYYGTFDNIKNAFSQFVNNAGSA 230

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---------------KKVCAI 285
             P  +  D      +     N   R  ++      I                 K  C  
Sbjct: 231 VLPDSVDIDYDAGNSITFGFENGSIRASNIKQHANSIEFDVLNNWIPALRAGMTKGKCTE 290

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            + Q VT+         L    G  +V NAL A  + I +GI  A + + L +   V  R
Sbjct: 291 MSSQCVTLGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARR 350

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           F  +  + +G ++  DYAH  N +   L   R+IT G++I
Sbjct: 351 FSLIA-DIKGVKLIEDYAHHPNEIYATLTAARSITKGKVI 389


>gi|317154475|ref|YP_004122523.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944726|gb|ADU63777.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 480

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 46/319 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S +  I   +GL      PT  I       +L T    Y A A    
Sbjct: 126 VAIAGTHGKTTTTSLLATIFTEAGLD-----PTVIIGG-----KLNT----YGANA---- 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDG----IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              G  ++  EA          DG    +  I    TN+ +DH+D++  Q A  +A  R 
Sbjct: 168 RLGGGDYLIAEADES-------DGSFLLLSPIISVVTNVDKDHMDFYADQDAIDDAFTR- 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   +P     ++  DD   + ++       C    +G + +     ++   H +    +
Sbjct: 220 FMNSIPFYGMNVVCGDDEGVQRLLPTIKRP-CLTYGLGPKNRL--RGEIITSHLRSLFRV 276

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++G+ + +     PG   V NAL   G+ +  G+D   ++  L     V  RFE  G  
Sbjct: 277 FLDGQPWGEVTVAQPGIHNVQNALACIGVALEAGLDKEDIVNGLANFGGVGRRFERKG-E 335

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI--A 406
            +G  +  DY H       I+ N+RT  +     R++V F     R    + + G+   A
Sbjct: 336 RKGVLVVDDYGHHPAE---IIANLRTARACYPDRRLVVAFQP--HRFTRTQALFGEFCKA 390

Query: 407 LDLADIAIVTDDNPRSEDP 425
              AD+ ++T+  P SE P
Sbjct: 391 FTDADLLLLTEIYPASESP 409


>gi|319764371|ref|YP_004128308.1| udp-n-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|330826590|ref|YP_004389893.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
 gi|317118932|gb|ADV01421.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|329311962|gb|AEB86377.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
          Length = 477

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 124/314 (39%), Gaps = 52/314 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+A+V S+A    +          I VV        L   R         +A+ G  G
Sbjct: 63  QGADAVVTSTAVQQDNPEVLAARERKIPVVPRAVMLAELMRLR-------KGIAIAGAHG 115

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +   +GL  +F IG    ++S   + +L                 QG  +
Sbjct: 116 KTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGTNAKL----------------GQG-EY 156

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLP 239
           + VEA     D   L+ + ++A   TN+  DH+     D+ + +QA+ +     F   +P
Sbjct: 157 IVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFGRLKQAFVD-----FLHRMP 208

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI----S 294
               AI+  D+   ++++    +  C V S G  +G  +    V A+  +   ++     
Sbjct: 209 FYGTAILCVDNPAIRDILP---SVTCPVTSYGLSEGAEVRALDVRAVGTQMHFSVQRRNG 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
           V   D D +  L GE  V NAL A  +   + +    VL  L     V  RF+  G    
Sbjct: 266 VTLPDLDVVLNLAGEHNVLNALAAIAVATELNVPDEAVLRALAGFTGVGRRFQRHGDLPA 325

Query: 353 SRGGRIYV--DYAH 364
             GGR  +  DY H
Sbjct: 326 QDGGRFTLIEDYGH 339


>gi|259907415|ref|YP_002647771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963037|emb|CAX54520.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia pyrifoliae
           Ep1/96]
 gi|283477248|emb|CAY73160.1| murD [Erwinia pyrifoliae DSM 12163]
          Length = 438

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 40/237 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A    L  P+ +Y+ +  S+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WQVGTGGNIGLPAL-TLLQQPAQLYVLELSSF 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S+ A+               A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 163 ---QLETASSLHAA---------------AATILNVTEDHMDRYPLGMQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                 +  ++ ADDA +  V      A  R +S G      HL +      +    + V
Sbjct: 205 ----NATVCVVNADDAMTMPV----RGADARCVSFGADVGDYHLTR-----QQGSTWLRV 251

Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+   + D +  L G+    NAL A  L  A+G+  A  L+ L   + +P RF+ V
Sbjct: 252 QGEKVLNTDEMH-LVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQRV 307


>gi|153854762|ref|ZP_01995996.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
 gi|149752669|gb|EDM62600.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 134/337 (39%), Gaps = 53/337 (15%)

Query: 64  IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---L 118
           I  G + +V ++A     ++F+  ++ N P+L    TR       + L G+   N    +
Sbjct: 66  IISGIDVVVYTAAIHPDNEEFAEAVKQNLPML----TR-------AELLGQLMTNYDVPI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALS 175
           A++GT GK++  S +  I     L + ++ PT ++    +    N     S  ++ +A  
Sbjct: 115 AISGTHGKTTTTSMLSHI-----LLAGEMDPTISVGGILKAIGGNIRVGNSEYFVTEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S                 H    I    G   N+  DH+D+ +      N+  R F 
Sbjct: 170 YTNSF---------------LHFFPKI----GVILNIDEDHLDFFKDLADIRNSFHR-FA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVT 292
           +LLPK+   +I  +    +E+     +  CRV+  G     +       +H+K+      
Sbjct: 210 KLLPKDGTLVINDNIPNLEEITA---DLDCRVIRYGNDSS-LDYSATNVLHDKKGEASFD 265

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G+  D +   + G+  V NAL A  +   +G+    + E L+  H    RFE+ G 
Sbjct: 266 LVKSGEFIDRISLSVNGDHNVSNALSAIAVADLLGVPFTKIKEGLKSFHGTDRRFEYKG- 324

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              G  +  DYAH    +   L   +      I  +F
Sbjct: 325 EVNGVTVIDDYAHHPTEINATLTAAKEYPHKEIWCIF 361


>gi|330686337|gb|EGG97942.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU121]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 47/284 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + + S L+    G    ++S  AQ+      S  YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKNSRLTGRLSGNIGYVASKVAQE----VSSKEYLITELS 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G+            +Q++   I +I    TN+   H+DYH++ + Y NAK ++++
Sbjct: 169 SFQLLGI------------EQYK-PHIAII----TNIYSAHLDYHESLENYQNAKKQIYK 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQV 291
                +     Y    Y +  +  + N   + L    Q    G +I   K   I  K   
Sbjct: 212 NQTEDD-----YLICNYHQRHLIESENLKAKTLYFSTQQVVDGIYI---KDGFIEYKGVR 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ISVE         LPGE  + N L A    I  G+    + + L     +  R +++GT
Sbjct: 264 IISVED------LVLPGEHNLENILAAVLAAILAGVPIKAIADSLTTFSGIEHRLQYIGT 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           N R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 318 N-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355


>gi|311114354|ref|YP_003985575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310945848|gb|ADP38552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 577

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           +SDSR +    IFVAI G++ DGH F+ +A   GA+  +V     L + +    S    +
Sbjct: 71  TSDSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESN---NSKIAQI 127

Query: 94  VVDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           VV+N+ + L L A      R     P +I+ +TG+ GK++    ++ +    G +   IG
Sbjct: 128 VVENSVEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIG 187

Query: 149 P 149
            
Sbjct: 188 S 188


>gi|330752619|emb|CBL87563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 427

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 123/304 (40%), Gaps = 47/304 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I+   IF ++ G+  +G+ F   AI  GA        Y++ D      +    
Sbjct: 16  VVTDSRKIKNNCIFFSLQGSNFNGNQFAKSAIENGA-------MYAVIDEEKYFENKENY 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + VDN+   L   A+    K    I+ +TG++GK++    +  + +    + F+   T  
Sbjct: 69  IQVDNSLATLQQLANFHRKKVKTKIIGITGSNGKTTTKELINSVLK----THFKTYCTKG 124

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIA----G 207
                 +N +  P        LS L  S+      +E  ++ + +  L  +  IA    G
Sbjct: 125 ----NLNNHIGVP--------LSLLEISENTEFAVIEMGANHIGEIEL--LSKIAEPNYG 170

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCR 266
             TN G+ H++   +++     K  L+ E L + S  I Y +DD   K ++         
Sbjct: 171 YITNFGKAHLEGFGSEEGVIKGKSELY-EFLTESSGFIFYNSDDEKQKHILSN------- 222

Query: 267 VLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                Y  KF   K+   ++     +   I VE  +  F   L G + + N + A  + I
Sbjct: 223 -----YNKKFGFGKEAGDLNYLVKAENPNIVVEVNNKTFKSTLFGNYNIPNVISAISIGI 277

Query: 324 AIGI 327
            +G+
Sbjct: 278 FLGV 281


>gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 465

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 11/112 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR   AG ++VA  G   DGH F+  AI +GA A++      L++  A       I
Sbjct: 27  VVTDSREASAGSLYVARRGENADGHAFVHGAIERGAVAVIAE--RELEEAVAQ------I 78

Query: 93  LVVDNTRKFLSLFASR---LYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           +V D+TR    L  +    L  +   +++A+TG+ GK++    + QI    G
Sbjct: 79  IVEDSTRALGDLARAHVDALRSRGTLDVIAMTGSVGKTTTKDLLLQILSEDG 130


>gi|315645748|ref|ZP_07898872.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
 gi|315279226|gb|EFU42536.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
          Length = 458

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 131/329 (39%), Gaps = 43/329 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ +V S+A S  +          I V+   +    L   R         +AV G  G
Sbjct: 62  QGADLVVYSTALSKDNVERVEAEKLNIPVLHRAQMLARLLNER-------KGVAVAGAHG 114

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +S +  + +  G+  +F IG    I +   + +                + +G  H
Sbjct: 115 KTTTSSMIALVMEECGVDPTFIIG--GEIMNVGTNAK----------------AGEG-EH 155

Query: 185 VSVEA-SSHG--LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  EA  S G  L  H   G+ L      N+  DH++ ++       A    F   +  +
Sbjct: 156 VVAEADESDGSFLQYHPWLGVVL------NIEADHLENYEGDFNRLKAAYVQFLSQIKPD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDF 300
             A++ ADD   + ++    +  C V + G      +      + ++Q   + +  G + 
Sbjct: 210 GTAVVCADDHNIQAILP---DLKCNVTTYGIHSDAEYTATNLVLGDRQVSFMMLHNGMEL 266

Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   +PG+  VYNA+     C+  GI    ++E + K +    RF+ +G  + G  + 
Sbjct: 267 GTVELSVPGKHNVYNAMATVICCLKGGISFEAIVEAIVKFNGAKRRFQVLG-EADGILVI 325

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            DYAH    +E  +   +  T  RII VF
Sbjct: 326 DDYAHHPTEIEATISAAKA-TGKRIIAVF 353


>gi|58698291|ref|ZP_00373208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58535164|gb|EAL59246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 122

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 18/109 (16%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R I+ G +F+A+ G   DGH F+ +A  +GA A +VS     + F        P
Sbjct: 28  NISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAVAAIVSEG-KYKSF--------P 78

Query: 92  ILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQIC 137
           +++V +T K L   AS  Y ++      ++AVTG+ GK      +Q+IC
Sbjct: 79  LMIVQDTLKALHDMAS-YYIRNVLIDAKVIAVTGSVGKP-----LQRIC 121


>gi|308235558|ref|ZP_07666295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 576

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           +SDSR +    IFVAI G++ DGH F+ +A   GA+  +V     L + +    S    +
Sbjct: 70  TSDSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESN---NSKIAQI 126

Query: 94  VVDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           VV+N+ + L L A      R     P +I+ +TG+ GK++    ++ +    G +   IG
Sbjct: 127 VVENSVEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIG 186

Query: 149 P 149
            
Sbjct: 187 S 187


>gi|29832662|ref|NP_827296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           avermitilis MA-4680]
 gi|60390553|sp|Q82AD8|MURD_STRAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29609782|dbj|BAC73831.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces avermitilis MA-4680]
          Length = 467

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 28/170 (16%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LAVTGT+GK++    +  I   +GL +  +G                
Sbjct: 101 LAWRLRGPGSAPWLAVTGTNGKTTTVQMLASILTAAGLRTAAVGNIG------------- 147

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + L  A+  L  +    ++VE SS+ L  H    ++  + +  N+  DH+D+H + +
Sbjct: 148 ---VSLLDAV--LGEETYDVLAVELSSYQL--HWAPSLRAHSATVLNIAPDHLDWHGSME 200

Query: 225 AYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY 272
           AY   K R++E        A +Y  AD A    V       GCR  +VG+
Sbjct: 201 AYTADKGRIYE----GNRVACVYNVADKATEDLVRAADVEEGCR--AVGF 244


>gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
 gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
          Length = 476

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 121/302 (40%), Gaps = 59/302 (19%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+ +  +S DSR++    +FV IVG K D H FI QAI  GA A+  S+   +      I
Sbjct: 23  EQVLANISLDSRNMSGLDLFVPIVGEKVDAHRFICQAIGNGAVAVFTSAHRDISQVEKAI 82

Query: 87  -----RSN-------TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                R N          + V++T+  L         +    ++ +TG+ GK++    + 
Sbjct: 83  ADWESRGNDGKAARKAAWIAVEDTKAALQSLGKYCRNRLSIPLVGITGSVGKTTTREMIA 142

Query: 135 -------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
                   + +  G S+ Q+G   T+SS         PS   +A     +S  G      
Sbjct: 143 AALSAGYAVYRTPGNSNSQVGVPITMSSI--------PSEAEIAVIELGMSEPG------ 188

Query: 188 EASSHGLDQHRLDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                  +  ++  +  + +   TN+G  HI+   +Q+     K+ + + + P E    +
Sbjct: 189 -------EMEKIARVACVDSAVVTNIGIAHIEQLGSQENILREKLHIQDGMNP-EGILFV 240

Query: 247 YADDAY--------SKEVMKRAHNAGCRVLSVGYQGKFIHLKK----VCAIHNKQQVTIS 294
             DD           + +++   +AGC      Y+ + + L +      A+H +++  + 
Sbjct: 241 NGDDPLLADIQAEGGRRIIRYGMSAGCE-----YRAEDVRLDEGYPVFTAVHGEKRTPVR 295

Query: 295 VE 296
           ++
Sbjct: 296 LQ 297


>gi|225011571|ref|ZP_03702009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
 gi|225004074|gb|EEG42046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
          Length = 437

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/361 (19%), Positives = 153/361 (42%), Gaps = 38/361 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R ++   +F+A+ G+  +G+L+  +A++ GA +++V     L++  A        
Sbjct: 21  ISTDTRTLKKDALFLALRGDNFNGNLYAEKALSLGASSVIVDDP-KLKNLGAN------S 73

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VV++T K L   A+    +    I+ +TG++GK++    V+++  +     ++I  T  
Sbjct: 74  IVVEDTLKTLQELATYHRKQLNTPIIGITGSNGKTTTKELVREVLSQ----KYKILATKG 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ-HRLDGIKLIA-GSF 209
                 +N +  P        L+ L       ++ +E  ++ LD+   L  I L   G  
Sbjct: 130 ----NLNNHIGVP--------LTLLELTKEHQIAIIEMGANHLDEIKNLCCISLPNWGYI 177

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++           K  L+  L+ ++   +I  DD      +K+  N       
Sbjct: 178 TNFGKAHLEGFGGVDGVIKGKSELYNHLIEQQQKILINGDDPLQ---IKQTKNYPVSSFG 234

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G +  F    ++    N++   + +   D  F   L G + + N   A        + +
Sbjct: 235 HGKENTF----QIST--NEKDDELQLTYNDQIFTSNLYGAYNLNNIAAAILFGYIFEVPT 288

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVF 388
             + + ++K      R + +    +   I +D Y     S+E  +K  + I + + +++ 
Sbjct: 289 KSIQKAIQKYQATNNRSQKIKI--KNTSIILDAYNANPTSMEHAIKAFKKIATQKSVLIM 346

Query: 389 G 389
           G
Sbjct: 347 G 347


>gi|3122406|sp|O07669|MURD_ENTHR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2222673|emb|CAA74234.1| murD [Enterococcus hirae]
          Length = 460

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 19/162 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   HIDYH+T++ Y  AK  L + +  K+   I+  +    +E+ K+       VL 
Sbjct: 193 TNIYEAHIDYHKTRKEYVKAKWHLQQNMTEKDY-LILNWNQEELRELSKKTK---ATVLP 248

Query: 270 VGYQGKFIHLKKVCAI-----HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              + K    K  C++     +N++++    E         +PG   V NAL A  +   
Sbjct: 249 FATEQKLP--KGACSLDGSIYYNQEKIMDITE-------LGVPGSHNVENALAAISVAKL 299

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GI +  +   L   H VP R ++VG   +G + Y D   T+
Sbjct: 300 YGISNEAIKNALHHFHGVPHRTQYVG-EFQGRKFYNDSKATN 340


>gi|326568323|gb|EGE18403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC7]
          Length = 469

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGK 126
           A+ I++S     +  S        I VV + + F+    +R   +     ++A+TG++ K
Sbjct: 62  ADQIIISPGIDPRTPSIAAAKAQGIPVVSDVQLFIDTLKARDLAQATNTPVIAITGSNAK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V + V ++ +R+G+    +G    I          TP       AL  L+ Q +  V 
Sbjct: 122 STVTTLVGEMAKRAGMI---VGVGGNIG---------TP-------ALELLTIQNMDLVV 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE        AII
Sbjct: 163 LELSSFQLEH--ISNLAAQGATILNLSADHLDRHDGMADYLAQKLRIFEHC----QTAII 216

Query: 247 YADDA 251
             DDA
Sbjct: 217 CQDDA 221


>gi|113475629|ref|YP_721690.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
 gi|110166677|gb|ABG51217.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
          Length = 902

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 30/228 (13%)

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--- 281
           A  NA+  L   +  +    + Y     + E++ R   AG   L+  Y+  +I + K   
Sbjct: 615 AVLNAEDPLVAAMADRVKGQVAYFSMDPNNELLLRHTEAGG--LAAIYENGYISILKGDW 672

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK--- 338
              I     V I++ GK           F + NAL A   C+A+     + +EH+ K   
Sbjct: 673 TLRIEKAVNVPITMAGK---------APFMIANALAA---CLAV-FTQGVKIEHIRKGLS 719

Query: 339 -----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
                +   PGR       S      VDYAH   S E +   +R     RI VV G G  
Sbjct: 720 TFVASVDQTPGRMNMFNMGSY--HALVDYAHNPASYEALGGFVRNWPGKRIGVVGGPGDR 777

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFI 440
           RD+     +G++A D+ D  I+ +D+     P    AE+I  G+  F+
Sbjct: 778 RDEDFVS-LGELAADIFDEIIIKEDDDTRGRPRGNAAELICQGVKQFL 824


>gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
          Length = 456

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 149/372 (40%), Gaps = 41/372 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ I  +++DSR      +FV + G++ DGH FI     +G     V +  +++D    I
Sbjct: 23  KQPIEVITTDSRSQVTNGLFVPLKGDRFDGHEFIKSVYEKG-----VIATLTMED--KVI 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 + V++TR+ L         +    ++ +TG+ GK+S    V  +        + 
Sbjct: 76  DPRLWTIKVEDTRQALLDLGHYYRNQFTVPVVGITGSVGKTSTKEMVAAVLS----GKWH 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLI 205
           +  T    +F  +N +  P  ++   A    S +      +E   +  D+ HRL    L 
Sbjct: 132 VHKTD--GNF--NNEIGLPLTLFKMDA----SHEAAV---IEMGMNHFDEIHRL---SLA 177

Query: 206 AGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           A       TN+G  HI+   +++    AK+ + + L+P     ++  D+     V +   
Sbjct: 178 AAPEVAVITNVGTSHIENLGSREGILKAKLEILDGLMPG-GLLVLNGDNDLLSTVGELPF 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVA 318
           N       V Y     +     AI N+ + T   ++      +      GE  VYN L A
Sbjct: 237 N------KVTYGLNTSNDYYAEAIANEGEYTTAIVTTPQYKCNIRIKALGEHMVYNTLAA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G+  A + + LE       R      +++   I   Y  + +S+E  LK +R 
Sbjct: 291 IAVAQYLGLSKAEIQKGLESYAPAKMRMHLETYDNQITVIDDTYNASPDSMEAALKVLRD 350

Query: 379 I-TSGRIIVVFG 389
             T GR I V G
Sbjct: 351 YDTKGRKIAVLG 362


>gi|296454434|ref|YP_003661577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296183865|gb|ADH00747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 481

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 103/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLC- 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 159 --------------VELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSK 202

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F         AI+Y A DA   E+   A  A GCR   VG+              G  +
Sbjct: 203 VFH----NAKRAIVYNAQDAKVSELAAEAQTAEGCR--KVGFTLEAPQAGQIGIEDGWIV 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + V ++    DF  L    G      V +AL A  L + +G D    L+
Sbjct: 257 DRSGVAGGAVGEPVRLAAI-TDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALK 315

Query: 335 HLEKLHVVPGRFEFVGTNS-RGGRI-YVDYAHTSN 367
            L        R E V   +  GG + +VD +  +N
Sbjct: 316 ALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATN 350


>gi|296113749|ref|YP_003627687.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
 gi|295921443|gb|ADG61794.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
          Length = 469

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGK 126
           A+ I++S     +  S        I VV + + F+    +R   +     ++A+TG++ K
Sbjct: 62  ADQIIISPGIDPRTPSIAAAKAQGIPVVSDVQLFIDTLKARDLAQATNTPVIAITGSNAK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V + V ++ +R+G+    +G    I          TP       AL  L+ Q +  V 
Sbjct: 122 STVTTLVGEMAKRAGMI---VGVGGNIG---------TP-------ALELLTIQNMDLVV 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE        AII
Sbjct: 163 LELSSFQLEH--ISNLAAQGATILNLSADHLDRHDGMADYLAQKLRIFEHC----QTAII 216

Query: 247 YADDA 251
             DDA
Sbjct: 217 CQDDA 221


>gi|209884384|ref|YP_002288241.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
 gi|209872580|gb|ACI92376.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
          Length = 482

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 130/336 (38%), Gaps = 52/336 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
            GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT
Sbjct: 80  NGADVLVVSTA---------IKRDNPELMAARAQRIPVVRRAEMLAELMRLKSCIAIAGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +     L    I     I+++  + RL                 +G  
Sbjct: 131 HGKTTTTSMVATLLDAGALDPTVIN-GGIINAYGTNARL----------------GEGEW 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V     S G        + +     TN+  +H+D+ +T +A  +A  R F E +P    
Sbjct: 174 MVVEADESDGT----FLKLPVDVAIVTNVDPEHLDHFKTFEAVQDA-FRHFVEGVPFYGF 228

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLK--------KVCAIHNKQQV 291
           A++  D A  + ++ R  +   R+++ G       + + L+        KV   H K   
Sbjct: 229 AVMCIDHAVVQALVGRIEDR--RIITYGENPQADARLVDLQPFPGGSKFKVEVRHRKAGA 286

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              +     D + P+PG     NA  A  +   IG+    + + L     V  RF   G 
Sbjct: 287 AHVIA----DLVLPMPGRHNALNATAAIAVAHEIGMSDEAIRKALAGFGGVKRRFTRTG- 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              G  +  DY H    +  +LK  R   +GR+I V
Sbjct: 342 EWNGVTVIDDYGHHPVEIAAVLKAARDTATGRVIAV 377


>gi|147678195|ref|YP_001212410.1| UDP-N-acetylmuramate--L-alanine ligase [Pelotomaculum
           thermopropionicum SI]
 gi|189029016|sp|A5D144|MURC_PELTS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146274292|dbj|BAF60041.1| UDP-N-acetylmuramate-alanine ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 461

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 142/364 (39%), Gaps = 42/364 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +AV G  GK++  S    + +++G+    +  G  S I   A+  R              
Sbjct: 107 IAVAGAHGKTTTTSMTALVLEKNGMDPTIVIGGELSEIGGNAKLGR-------------- 152

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++  EA        +LD +  I    TN+  DH+DY+++ +    A  R F 
Sbjct: 153 ------GEYLVAEADESDGSFLKLDPVIEI---ITNIEDDHLDYYRSVENIL-AAFRRFM 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P+   A+   DD   +E++   ++  C   ++        ++ +  +       +  
Sbjct: 203 AKVPESGLAVACLDDPRLRELLA-GYDRPCLTYALDNPEADYTMRNIRLMRQVTAGDVYY 261

Query: 296 EGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G     L   +PG   + NA+ A  +   +G+    +   L+       RF+  G    
Sbjct: 262 RGGFLGCLELSVPGRHNLSNAMAAVAVGRFVGLAFEGIAAALKDFRGAGRRFQLTG-EVN 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI---ALDLAD 411
           G ++  DYAH  + ++  LK    + +GR++ VF         +   +G+    A + AD
Sbjct: 321 GIKVIDDYAHHPSEIKATLKAAGQVKTGRVVGVF---QPHRYTRTLFLGERFGEAFEDAD 377

Query: 412 IAIVTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + I++D     E P E + A+ I      H     I    R E +   ++M    D+++ 
Sbjct: 378 VVIISDIYSAGEKPIEGVSAKTIVSAIEKHNGRKVIYLPTRQEIVDYLVQMARPGDMILT 437

Query: 465 AGKG 468
            G G
Sbjct: 438 MGAG 441


>gi|145641283|ref|ZP_01796863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|145274120|gb|EDK13986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.4-21]
          Length = 99

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           A+V  +  S +  +     N P++      + LS  A
Sbjct: 59  AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLA 95


>gi|86608391|ref|YP_477153.1| cyanophycin synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556933|gb|ABD01890.1| cyanophycin synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 898

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 12/150 (8%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR         G ++ VDYAH     E I   +      R I V G  GDR       +
Sbjct: 726 PGRLNLFDVG--GYQVLVDYAHNPAGYEAIQSTLERWDCQRKIGVIGGPGDRRNSDLREL 783

Query: 403 GKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-------AIRTAIE 454
           G +A  + D AIV  DD+ R  +P ++ A I  G     + G+R++       AI TA+E
Sbjct: 784 GVLAARMFDRAIVKEDDDRRGREPGEVAALIRQGWEQE-KAGDRLQEILDEATAIETALE 842

Query: 455 MLNKQDVLVV-AGKGHETVHIVTNGEKKMS 483
                D++V+       T+ I+T  + K++
Sbjct: 843 KAEPGDLVVIFPADVQRTIQIITRFQDKLN 872


>gi|255326230|ref|ZP_05367316.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
 gi|255296684|gb|EET76015.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
          Length = 495

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 171/434 (39%), Gaps = 63/434 (14%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRS 140
           S  IR + P LV    +    L  S           ++AV GT GKS+ +S +  +  + 
Sbjct: 90  STAIREDNPELVAARAQGLRVLHRSEALAAVMGESQVVAVAGTHGKSTTSSMISVMFDQL 149

Query: 141 GLS-SFQIGPTSTISSFAQDNRLTT--PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G   SF +G  + I+    +  L    P  I++A+A                 S G    
Sbjct: 150 GAQPSFAVG--TVIAGRGTNAHLGAQGPETIFVAEA---------------DESDGSFVR 192

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               I ++    TN+  DH+D+++T +  F A  R    L P     +  ADDA + ++ 
Sbjct: 193 YCPAIAVV----TNVEPDHLDFYETDERVFEAFNRFVGSLAPN-GVVVTCADDAGAADLA 247

Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT---------ISVEGKDFDFLFPLP 307
            R+  AG  V++ G      + + ++ +  +              +  EG+  D    +P
Sbjct: 248 ARSRAAGVPVVTYGEAADADLRISEITSAGSSSSSHLSWSFECRGVRYEGEQ-DLALKVP 306

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA  A    +  G ++A +   L        RF   G  + G +++ DYAH   
Sbjct: 307 GIHNQLNASAAFASALISGYEAADIARALADFVGADRRFTLRGEVA-GVKVFDDYAHHPT 365

Query: 368 SLEMILKNIRTITSG-RIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +   L+  RT+  G  + V+F        R+  K       AL ++D A V D  P  E
Sbjct: 366 EVFRALQTGRTVADGHNLYVIFQPHLFSRTREFAKEFAQ---ALSMSDRAHVLDIYPARE 422

Query: 424 DP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLVVAGKGH--------- 469
            P E + +E+I G  GF E   R     +AIE +       D+++  G G          
Sbjct: 423 LPIEGVTSELITG-AGFSEV--RYATAESAIEDIVACAQDGDIVMTVGAGDVTALGARLL 479

Query: 470 ETVHIVTNGEKKMS 483
           E++ I   GE K S
Sbjct: 480 ESLEIRHGGESKKS 493


>gi|312143936|ref|YP_003995382.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904587|gb|ADQ15028.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 453

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 15/180 (8%)

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVLSVGYQ 273
           DH DY++   A F A  + F +   K++  +   DD   K++ K R       + +  Y 
Sbjct: 184 DHPDYYK-DLAEFKAIFKRFADKNEKKALVLYNGDDKNLKDLFKNRKKTKAFSLKNYDYS 242

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDS 329
            K I        ++K + +      D +FL  +     GE+ +YNA  A    + + I++
Sbjct: 243 VKNIS-------YDKNKSSFDFYQAD-NFLMKINLSSAGEYNIYNAAAAVSTALELDIET 294

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             + + L+    V  RFE     + G   +  DYAH    ++ +LK ++ +   RI  VF
Sbjct: 295 KFIKKALKTFKGVGRRFELKAKINNGTVDVVDDYAHHPTEIKALLKAVKQMGYSRITAVF 354


>gi|218903320|ref|YP_002451154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
 gi|218538769|gb|ACK91167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
          Length = 246

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 14/138 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 26  EIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------G 141
             PI+ VD+T   L   A     +    ++ +TG++GK++V   ++ I + +       G
Sbjct: 79  GVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKG 138

Query: 142 LSSFQIGPTSTISSFAQD 159
             + QIG   TI    +D
Sbjct: 139 NFNSQIGLPLTILEMKRD 156


>gi|256845952|ref|ZP_05551410.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_36A2]
 gi|256719511|gb|EEU33066.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_36A2]
          Length = 468

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 14/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-L 268
           TN+  DH+D H       N K    E +   +  AII  D    KE + R       +  
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIEFISHTQKEAIICMDCENLKEAITRLPKGKSVITY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+  +   I  + +     K    + +  +   +F   +PGE  + N+L    L +  G+
Sbjct: 238 SIKDENTSIFARNIRITDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVIYLALKFGV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + E L K      R++ +         G  ++  RI  DYAH    ++  LK I++
Sbjct: 298 SKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKKVRIIDDYAHHPTEIKATLKAIKS 357

Query: 379 ITSGRIIVVF 388
           I + R++ +F
Sbjct: 358 IDTSRLVAIF 367


>gi|330501925|ref|YP_004378794.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
 gi|328916211|gb|AEB57042.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
          Length = 480

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 128/326 (39%), Gaps = 52/326 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+ A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 75  AEQADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 127

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L + S   +A+A     S+L  
Sbjct: 128 GKTTTTSLLASVFAAGGLDPTFVIG--GRLNAAGTNAQLGS-SRFLIAEADESDASFLHL 184

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFE 235
           Q +  V     +        D +    G F  L +  I++      Y  A +     +  
Sbjct: 185 QPMVSVVTNIDA--------DHMSTYGGDFNKLKKTFIEFLHNLPFYGLAVLCVDDPVVR 236

Query: 236 ELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ELLP+   P + Y    +S++   RA N    V   G +  F  L+  C     + + +S
Sbjct: 237 ELLPQVGRPTVTYG---FSEDADVRAIN----VRQEGMRTYFTVLRPDC-----EPLDVS 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353
           V          +PG   V NAL    +    GID A ++  L     V  RF+  G    
Sbjct: 285 VN---------MPGNHNVLNALATTAIATDEGIDDAAIVSGLSGFQGVGRRFQVYGELPV 335

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR 377
            GG + +  DY H    +  ++K +R
Sbjct: 336 DGGSVMLVDDYGHHPREVAAVIKAVR 361


>gi|110833460|ref|YP_692319.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
 gi|123345752|sp|Q0VS01|MURC_ALCBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110646571|emb|CAL16047.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
          Length = 474

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 120/336 (35%), Gaps = 54/336 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S+A + ++          I VV   +    L   R       + +AV GT GK
Sbjct: 75  GADVVVTSTAVNTENLEVAAAHERRIPVVPRAQMLAELMRFR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S    I   +GL  +F IG    ++S   + RL             YL ++     
Sbjct: 128 TTTTSLTAAIMAEAGLDPTFVIG--GRLNSAGTNARLGQS---------RYLVAE----- 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+ +  L    +  I       TN+  DH+  +    A        F   LP    A+
Sbjct: 172 ADESDASFLHLQPMSAI------VTNVDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAV 225

Query: 246 IYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +  DD   ++++ R          + +A  R  +V   G   H + V A           
Sbjct: 226 MCVDDPVVRKLLPRVNRQVIRYGFSEDADLRAENVRQDGMVTHFRVVRA----------- 274

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---N 352
           EG+  D    +PG   V NAL A  +    G     ++  L     V  RF+  G    +
Sbjct: 275 EGEPLDVSLNMPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNFTGVGRRFDVQGDYHFD 334

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                +  DY H    +   +  IR    GR + + 
Sbjct: 335 GGSATLVDDYGHHPREVAATIDAIREGWPGRRLAML 370


>gi|187477730|ref|YP_785754.1| cyanophycin synthetase [Bordetella avium 197N]
 gi|115422316|emb|CAJ48840.1| cyanophycin synthetase [Bordetella avium 197N]
          Length = 857

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 15/167 (8%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQV NA+   G    +GID A + + L          PGRF     +  G  +  DY H 
Sbjct: 674 FQVENAMACIGAAWGLGIDWATIRQALASFVNDAQTAPGRFNVF--DYGGATLIADYGHN 731

Query: 366 SNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++E ++  I  + +  R +V+ G G  RD+  R     +     D+ +  D   R  +
Sbjct: 732 PDAIEALVAAIEALPAKRRSVVISGAGDRRDEDLRRQTEILGDYFDDVLLYEDQCQRGRE 791

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIR-------TAIEMLNKQDVLVV 464
             ++ A +  G+    ++ +RIE IR        A+E L+  D+ ++
Sbjct: 792 DGEVIALLRQGLT-QAKRASRIEEIRGEFIAIDRALESLSPGDLCLI 837


>gi|317483069|ref|ZP_07942070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
 gi|291516664|emb|CBK70280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum F8]
 gi|316915475|gb|EFV36896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 481

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 103/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLC- 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 159 --------------VELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSK 202

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F         AI+Y A DA   E+   A  A GCR   VG+              G  +
Sbjct: 203 VFH----NAKRAIVYNAQDAKVSELAAAAQTAEGCR--KVGFTLEAPQAGQIGIEDGWIV 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + V ++    DF  L    G      V +AL A  L + +G D    L+
Sbjct: 257 DRSGVAGGAVGESVRLAAI-TDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALK 315

Query: 335 HLEKLHVVPGRFEFVGTNS-RGGRI-YVDYAHTSN 367
            L        R E V   +  GG + +VD +  +N
Sbjct: 316 ALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATN 350


>gi|215403429|ref|ZP_03415610.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           02_1987]
          Length = 362

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 29/191 (15%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +AY        E ++P  +  ++  DD     + +RA   G RVL
Sbjct: 174 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 232

Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             G             +Q    G   H++    +   Q   +            +PG   
Sbjct: 233 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 284

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368
             NAL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    
Sbjct: 285 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 344

Query: 369 LEMILKNIRTI 379
           +   L   R +
Sbjct: 345 ISATLAAARMV 355


>gi|126729249|ref|ZP_01745063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
 gi|126710239|gb|EBA09291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
          Length = 466

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 118/294 (40%), Gaps = 41/294 (13%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           + P  ++AVTG++GKS+ ++ +  I   S  SS   G    I     D  +  P      
Sbjct: 116 ERPPRVVAVTGSNGKSTTSALIHHILTASVRSSQLAG---NIGRGVLD--IDPPE----- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                    GV  V +E SS+  +  R   +      FTNL  DH+D H     YF AK 
Sbjct: 166 -------DGGV--VVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGLGGYFAAKR 214

Query: 232 RLFEELLPKESPAIIYADDAYSKEVM-----KRAHNAGCRVLS---VGYQGKFIHLKKVC 283
           RLF E  P     +I  D+   + +       RA +   RV +    G        K   
Sbjct: 215 RLFAEGGPDRC--VIGVDEVEGQFLAGQMAEGRADDRVIRVATHKLTGPGWMVFARKGFL 272

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +   K +   SV+ +D   +  LPG     NA  A   C ++G+    +   L     +P
Sbjct: 273 SEWRKGRQIASVDLRD---VAGLPGAHNHQNACAAWAACRSLGLGPREIEAGLRSFAGLP 329

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            R + +    +GG I+V+ +  +N ++  LK +      R +    CGG   +G
Sbjct: 330 HRSQRIA--EQGGVIFVNDSKATN-VDSALKALLAFDRIRWV----CGGLMKEG 376


>gi|88856513|ref|ZP_01131170.1| UDP-N-acetylmuramate-alanine ligase [marine actinobacterium
           PHSC20C1]
 gi|88814167|gb|EAR24032.1| UDP-N-acetylmuramate-alanine ligase [marine actinobacterium
           PHSC20C1]
          Length = 482

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVL 268
           TN+  DH+D++ +  A+ +A    F E   + S A++ + DD  +  V +R ++A   ++
Sbjct: 188 TNVDADHLDHYGSHDAFDDA----FVEFASRASDAVVVSSDDPGAIRVTQRLNHA--NIV 241

Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G  +   + L  V +       ++ V+G++      +PG     NA  A  +   +G 
Sbjct: 242 TFGEAEDATVRLHSVTS-EGPVAFSVVVDGREERVQLSVPGHHNAVNATGAIAVLTGLGH 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386
           D    ++ +        RFE       G  +Y DYAH    +E  L   R++  +G++I 
Sbjct: 301 DLGAAIDAVSTFAGTQRRFELHAVVD-GVSVYDDYAHHPTEVEAALSGARSVVGAGKLIA 359

Query: 387 V 387
           V
Sbjct: 360 V 360


>gi|290961154|ref|YP_003492336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptomyces
           scabiei 87.22]
 gi|260650680|emb|CBG73796.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Streptomyces scabiei 87.22]
          Length = 473

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 31/173 (17%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LAVTGT+GK++    +  I   +GL +  +G                
Sbjct: 101 LAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILTAAGLRTAAVGN--------------- 145

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              I ++     L  +    ++VE SS+ L  H    ++  + +  NL  DH+D+H + +
Sbjct: 146 ---IGVSLLDVVLGDEPYDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSME 200

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSK----EVMKRAH-NAGCRVLSVGY 272
           AY   K R++E        A +Y  DA  K    ++++ A    GCR  +VG+
Sbjct: 201 AYAADKGRVYE----GNRVACVYNVDATDKPSTEDLVREADVEEGCR--AVGF 247


>gi|239940572|ref|ZP_04692509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 15998]
 gi|291444007|ref|ZP_06583397.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346954|gb|EFE73858.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
          Length = 472

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 26/160 (16%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           GK     LAVTGT+GK++    +  I + +GL +  +G                   + L
Sbjct: 109 GKKAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIG----------------VSL 152

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A+  L       ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K
Sbjct: 153 LDAV--LGETEYDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADK 208

Query: 231 MRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
            R++E      + A +Y  AD A    V +     GCR +
Sbjct: 209 GRVYE----GNTVACVYNVADPATEDLVREADVEEGCRAI 244


>gi|145635583|ref|ZP_01791281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|145267145|gb|EDK07151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 105

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9   NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           A+V  +  S +  +     N P++      + LS  A
Sbjct: 59  AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLA 95


>gi|88811837|ref|ZP_01127090.1| UDP-N-acetylmuramate--alanine ligase [Nitrococcus mobilis Nb-231]
 gi|88790721|gb|EAR21835.1| UDP-N-acetylmuramate--alanine ligase [Nitrococcus mobilis Nb-231]
          Length = 482

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 125/326 (38%), Gaps = 40/326 (12%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +A+V SSA    +          I VV        L   R YG      +AV GT GK++
Sbjct: 81  DAVVTSSAVGPDNSEVVAARQHRIPVVPRAEMLAELMRFR-YG------VAVAGTHGKTT 133

Query: 129 VASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             S +  +    GL  +F IG    ++S A   RL                  G  H  V
Sbjct: 134 TTSLIASLLAEDGLDPTFVIG--GRLNSVASHARL------------------GAGHYLV 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A +   D   L    +IA   TN+  DH+  +Q   A   A    F   LP    A++ 
Sbjct: 174 -AEADESDASFLYLQPMIA-VVTNIDADHLGAYQGDFARLRASFLEFLHHLPFYGLAVLC 231

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLF 304
            DD   + ++ R         S GY      ++    +    + + +V   D   F    
Sbjct: 232 IDDPEVRALLDRTTRPA---RSYGYSAD-ADVRATAVVQRGLRTSFAVRVGDEAPFSVDL 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV--D 361
            LPG     NAL A  + + +G+  A ++  L +   +  RF+  G  +  GGR+ +  D
Sbjct: 288 NLPGRHNALNALAAIAVALELGVSRAAIVRGLAEFAGIDRRFQPCGVLALGGGRVSLVDD 347

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           YAH    +  +L+  R    GR IVV
Sbjct: 348 YAHHPREIAAVLRAAREGWPGRRIVV 373


>gi|258540735|ref|YP_003175234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|257152411|emb|CAR91383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 462

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 48/370 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR ++ G +FV + G + DGH FIP A A GA A  V+  +        + +  P 
Sbjct: 29  VAFDSRRLKPGMLFVPLHGER-DGHEFIPAAAAAGAVATFVAEDH------LPMTTKLPT 81

Query: 93  LVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           LVV +    +   A   L  K    ++A+TG++GK++       I       + Q     
Sbjct: 82  LVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVK 135

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA---- 206
           T  ++  +N +  P        ++ LS +  T V V     G+D+  +L  +  +A    
Sbjct: 136 TPDNY--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSSLAEPDV 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEVMKRAH 261
              T +G  HI++ +T+    +AKM + + L  KE    I+  D     + +K+V +   
Sbjct: 184 AVITMIGEAHIEFFKTRAKIADAKMEITDGL--KEDGTFIFNGDEPLLVSRAKQVTQSQE 241

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G    +      F H   +    N  + T+  +  +  F  P+ GE+ V NAL A  +
Sbjct: 242 TFGLHPENT----LFAH--SISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
                +    + + L    V   R +++     G +I  D Y     +++ ++ +     
Sbjct: 295 GRRFHVKPEAMQKALAHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFQ 353

Query: 380 TSGRIIVVFG 389
           T+GR I V G
Sbjct: 354 TAGRHIAVLG 363


>gi|24987384|pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate-Alanine Ligase
           Murc (Tm0231) From Thermotoga Maritima At 2.3 A
           Resolution
          Length = 469

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 279 LKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           L+   A   +Q+  +   GK + +    +PG   V NAL    L  ++G D A VLE LE
Sbjct: 245 LEXRSASRAEQKAXVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALE 304

Query: 338 KLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTI-TSGRIIVVFG----C 390
           +   V  RF  +  +     IYV  DYAHT + +  +L+  + +  + +I+V+F      
Sbjct: 305 EFRGVHRRFS-IAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYS 363

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD 417
             +R+ G      K AL LAD  +VT+
Sbjct: 364 RLEREDGN---FAK-ALQLADEVVVTE 386


>gi|317489849|ref|ZP_07948343.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911047|gb|EFV32662.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 269

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 111/262 (42%), Gaps = 51/262 (19%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR----- 87
           ++ DSR  + G ++VA+ G + DGH F+  A++ GA   +V     +Q     +R     
Sbjct: 30  LTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALV-----MQPLDEAVRMLAAE 84

Query: 88  --------SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                    +T   V D  R+    + S L+G+    ++A+TG++GK++  + V+ +   
Sbjct: 85  LGASVIEVPDTAHAVADIARE----WRSHLHGR----VIALTGSTGKTTTKNLVRDVL-- 134

Query: 140 SGLSSFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                      ST+S+ A    Q+N L  P  +  A+       Q    V VE    G  
Sbjct: 135 ----------ASTLSTVATAGNQNNELGVPKTLLAAE-------QDTQAVVVEMGMRGAG 177

Query: 196 Q--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           Q     D ++   G   N+G  HI+   +++    AK  L   L      A + ADD Y+
Sbjct: 178 QLADLCDYVRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYA 237

Query: 254 KEVMKRAHNAGCRVLSVGYQGK 275
             V + A     RV +V + G 
Sbjct: 238 DFVREHARLDARRVETVLFDGS 259


>gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila psittaci RD1]
 gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila
           psittaci 6BC]
          Length = 810

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 162/422 (38%), Gaps = 77/422 (18%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           ++   +R   PIL       FL            +  + V+G+ GK++V+S +  I Q +
Sbjct: 79  EYLEAVRKQLPILHRSELLAFL---------MQEQTSILVSGSHGKTTVSSLITAIFQTA 129

Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
               S+ IG  +++S     N  +  S  ++A+A                 S G  +H L
Sbjct: 130 KKDPSYAIGGLNSLSL----NGYSGSSEYFIAEA---------------DESDGSLKHYL 170

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             + ++    TNL  +H+   +  +      +  F   +  E P + +            
Sbjct: 171 PKVAVV----TNLDNEHLSNFEGSKEKLALTIEEFTRKV--EDPRLCF------------ 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQ------VTISVEGKDF-DFLFPLPGEF 310
            +N  C+ L     G      + C   IH+  Q       ++S  GKD+ D    L G+ 
Sbjct: 213 -YNGDCQELKGRISGTSYGFSQDCNLRIHSYYQDGWRSLFSLSFLGKDYLDIDLNLIGKH 271

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA VA G+ + +GID   + E L+    +  R E    + +    + DYAH  + + 
Sbjct: 272 NIANAAVAMGIALTLGIDEESIREALKNFSGIQRRMERKNVSEK-FLFFEDYAHHPSEIS 330

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSE----- 423
             L+ +R     R IV   C   R    +  +     A   AD  I+TD     E     
Sbjct: 331 CTLRGLRDAVGLRRIVAI-CQPHRFSRLQYCLEDFYKAFQDADEVILTDVYSAGETALDL 389

Query: 424 -DPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             PEK+ AE I    H    ++   N I  ++  I +    DV +  G G+  ++ V N 
Sbjct: 390 PSPEKL-AETISLSSHVQCSYVPYDNIIPYLQQEIRV---HDVCISLGAGN--IYTVGNA 443

Query: 479 EK 480
            K
Sbjct: 444 LK 445


>gi|310642991|ref|YP_003947749.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Paenibacillus polymyxa SC2]
 gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus polymyxa SC2]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 150/377 (39%), Gaps = 44/377 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-DFSAT 85
           ER +  V +DSR  Q+  +FV +VG + DGH ++ Q +++       ++AY  Q D  A 
Sbjct: 23  ERMVEGVFTDSRRPQSLGLFVPLVGERFDGHHYVQQIVSERG-----ATAYLWQKDHGAP 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQ 138
              N   + V++T + L   A+    +   +++ +TG++GK++    V        ++ +
Sbjct: 78  PTVNA--IEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTKDIVNALLGTTFKVHK 135

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G  +  IG   T+ S  QD  +     + L   +S     G   + + A+    D   
Sbjct: 136 TEGNYNNHIGLPLTVLSMPQDTDI-----LVLEMGMS-----GRGEIRLLANIAQPD--- 182

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257
                      TN+G  H+    ++     AK+ +   + P     +IY  D+    +V+
Sbjct: 183 -------VAVITNIGESHLLQLGSRTEIARAKLEIASGIKP--GGLLIYNGDEPLLPQVL 233

Query: 258 KRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                    G  + + G                +  + I+ +     F  PL G+  V N
Sbjct: 234 AEPETVKPEGLELFTFGLAADNDDYPTEITSDGEGSLFITAQSGQEAFRLPLLGQHNVVN 293

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
            L A  +     +D+  + + L  L +   R E V   S G  +  D Y  +  S++  +
Sbjct: 294 GLAALAVARHFNVDADHIRKGLSSLKLTGMRIEVVKC-SDGLTVLNDAYNASPASMKAAI 352

Query: 374 KNIRTI-TSGRIIVVFG 389
           + +    T GR I V G
Sbjct: 353 QTLSAYKTGGRKIAVLG 369


>gi|289579389|ref|YP_003478016.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
 gi|289529102|gb|ADD03454.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
          Length = 464

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+DY +          R F  L+P +   +   DDA     M   +     +++ 
Sbjct: 184 NVDSDHLDYFKNIDN-IKQSFRQFASLVPPDGYVVACKDDA---NTMYVVNGLNKNIVTY 239

Query: 271 G------YQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G      ++ K I    K CAI +        E    +F   +PG+  VYNAL A  +  
Sbjct: 240 GIYEDSDWKAKNIRFDDKGCAIFD----VYYKEEYMGNFKLSIPGKHNVYNALAALAVSH 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID      +L +      RFE  G    G  I  DYAH    ++  L+  +     R
Sbjct: 296 LVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDDYAHHPAEIKATLEAAKNYPHKR 354

Query: 384 IIVVF 388
           II +F
Sbjct: 355 IICIF 359


>gi|119387199|ref|YP_918254.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
 gi|166224712|sp|A1BAL4|MURC_PARDP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119377794|gb|ABL72558.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
          Length = 475

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+  A + E L +   V  RF  VG    G  I  DY 
Sbjct: 287 LPMPGDHNVSNALAAVAVARHLGMKRAQIREALARFGGVSRRFTRVG-EVDGVTIIDDYG 345

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R  T GR+I V
Sbjct: 346 HHPVEIAAVLKAARQATKGRVIAV 369


>gi|313159807|gb|EFR59163.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes sp. HGB5]
          Length = 414

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+   +S+D+R I+ G +F A+ G   DG+ F   A+++GA       AY + D  A + 
Sbjct: 9   RRHPRISTDTRRIEPGSVFFALHGATFDGNRFAADALSKGA-------AYVVVDDPAAVS 61

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQI 136
            +  +LV D       L  +R Y +     ILA++G++GK++    V ++
Sbjct: 62  GDRTVLVGDTLEALQEL--AREYRRELAIPILAISGSNGKTTTKELVSRV 109


>gi|239987056|ref|ZP_04707720.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 11379]
          Length = 475

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 26/160 (16%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           GK     LAVTGT+GK++    +  I + +GL +  +G                   + L
Sbjct: 112 GKKAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIG----------------VSL 155

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A+  L       ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K
Sbjct: 156 LDAV--LGETEYDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADK 211

Query: 231 MRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
            R++E      + A +Y  AD A    V +     GCR +
Sbjct: 212 GRVYE----GNTVACVYNVADPATEDLVREADVEEGCRAI 247


>gi|269960239|ref|ZP_06174614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
 gi|269835046|gb|EEZ89130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
          Length = 437

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 118/309 (38%), Gaps = 67/309 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL+   +G    I   A D                 
Sbjct: 110 VIAITGSNGKSTVTDLTGVLAKAAGLT---VGVGGNIGVPALD----------------- 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE- 235
           L  Q      +E SS  L+      +KL A +F NL  DH+D +     Y  AK+R+F+ 
Sbjct: 150 LLEQDADLYVLELSSFQLETTA--SLKLKAAAFLNLSEDHMDRYDGMADYRQAKLRIFDN 207

Query: 236 -----------ELLPK-ESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                      E  P+ E+P + +  D  AY  EV                        +
Sbjct: 208 TELAVVNRDDRETFPETETPLVTFGSDEQAYGLEVDGN---------------------R 246

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              + + Q+V  S E K       L G+  + NALV   L  A G+D    L  L+    
Sbjct: 247 TWLLDHGQRVIASDELK-------LVGKHNLANALVVLALLKAAGVDYHKSLNALKTYTG 299

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRP 400
           +  R + V  N RG +   D   T+ +  M   +    T    ++V G G   D    +P
Sbjct: 300 LTHRCQVVADN-RGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKP 358

Query: 401 IMGKIALDL 409
           I   + L L
Sbjct: 359 IFATLNLQL 367


>gi|254496588|ref|ZP_05109456.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
 gi|254354212|gb|EET12879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
          Length = 454

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 130/333 (39%), Gaps = 60/333 (18%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENI 117
           ++A  A+ ++V +A         I+   P+L  V++  + + S     A  +  K+   +
Sbjct: 57  SLALKADVVIVGNA---------IKRGMPVLEAVIEAGKSYTSGPQWLAENILSKY--QV 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A++GT GK++  S V  I  ++GL+  F IG  S  S F    RL      ++ +A  Y
Sbjct: 106 IAISGTHGKTTTTSMVSWILDQAGLNPGFLIGGVS--SDFKTSARLGG-GKWFVIEADEY 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S+                 H    I ++     NL  DH D +   +A    +      
Sbjct: 163 DSAFFDKRPKF--------MHYRPRIAIL----NNLEFDHADIYPNLEA-IQMQFHYLLR 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P    AI   DD    EV+ R              G++  ++++    + Q     +E
Sbjct: 210 TIPASGVAIKPRDDKALNEVIAR--------------GQYSRIEEIALAGDAQWSVTFIE 255

Query: 297 --GKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             G  F  L          + L G F V N L A    +  G+   +  E LE+   V  
Sbjct: 256 DNGSAFKVLHYGEEIAEVHWSLIGRFNVENGLAAIAASVNAGVSPKVAAEALERFTPVKR 315

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           R E V +N  G  +Y D+AH   ++   +  ++
Sbjct: 316 RLE-VKSNKHGITVYDDFAHHPTAITRTIDALK 347


>gi|217979587|ref|YP_002363734.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Methylocella
           silvestris BL2]
 gi|217504963|gb|ACK52372.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylocella
           silvestris BL2]
          Length = 461

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 119/297 (40%), Gaps = 40/297 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+  + +  +    G    QIG             + TP       AL  
Sbjct: 116 LIAITGTNGKSTTTALIAHLFATLGFD-VQIG-----------GNIGTP-----ILALEP 158

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            SS+ V HV VE SS+ +D      +    G   N+  DH+D H T + Y   K R    
Sbjct: 159 PSSERV-HV-VECSSYQIDL--APSLDPTVGVLLNVTPDHLDRHGTMENYAAIKAR---- 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---CAIHNKQQVTI 293
           L+     A+I  DDA+   + K+    G  V+ V   G       V    A++ +    +
Sbjct: 211 LVSAADHAVIGVDDAFCAAIAKKLRAEGHDVIGVSAAGMLEGDGVVFEGGALYWRGGRRL 270

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +   D   +  L G     NA  +  +  AIG+D A + + L     +  R E VG   
Sbjct: 271 DLI-ADLSGVGSLRGAHNGQNAAASVAVLHAIGLDGAGLAKGLRSFAGLAHRMEEVGKYG 329

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK----RPIMGKIA 406
           +   +    A  +++ E  L +   I        +  GG   QG     +P+ GKIA
Sbjct: 330 KALLVNDSKATNADAAEKALLSFDNI-------FWILGGRAKQGGIESLKPLFGKIA 379


>gi|210621753|ref|ZP_03292802.1| hypothetical protein CLOHIR_00747 [Clostridium hiranonis DSM 13275]
 gi|210154635|gb|EEA85641.1| hypothetical protein CLOHIR_00747 [Clostridium hiranonis DSM 13275]
          Length = 432

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 178/422 (42%), Gaps = 72/422 (17%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG----------- 141
           L +++T K + L  +    +   NI+ V GT+GK S+ SF+ ++ ++SG           
Sbjct: 20  LGLESTEKLMELLGN---PQDELNIIHVAGTNGKGSICSFIAKVLEKSGYKVGLFTSPYL 76

Query: 142 -------------LSSFQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYL--SSQGV 182
                        ++   I  + +      D  L     +P+   +  A+++L    + V
Sbjct: 77  EVFNERIRINGENITDEHIAKSVSEVKLRIDKMLAEGYDSPTEFEIVTAMAFLIYKWENV 136

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPK 240
            +  +E    G    R D   +I     ++    I    T+          +E+  ++ K
Sbjct: 137 DYAVMEVGLGG----RYDSTNIIKNPLVSVIA-SISLDHTRVLGDTIAKIAYEKGGIIKK 191

Query: 241 ESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            S  ++Y+    +++V+K+ A       +   +    I++KK   +H+ Q    S+ GK+
Sbjct: 192 NSAVVVYSQGDEAEDVLKKIAAEENAEFIEADFSS--INVKK-DDVHS-QIFDFSINGKE 247

Query: 300 F-DFLFPLPGEFQVYNALVA---------AGLCIAIGIDS--ALVLEHLEKLHVVPGRFE 347
           F D    L GE QV N + A         +G    I  DS  A +LE        PGR E
Sbjct: 248 FKDMEIKLIGEHQVRNCVTALNAIDYLRRSGKVANITDDSVKAGILETK-----WPGRVE 302

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA 406
            V  N       +D AH  +    + K +    + R ++++ G   D+D      + +I 
Sbjct: 303 KVMENPT---FIIDGAHNEDGARSLRKVLDKYFADRNLVLMLGMLEDKDI---DTVLEIL 356

Query: 407 LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           + + D  +VT+ DNPR    +K++A+ I    G +E   +IE A+   +E+  + +V++ 
Sbjct: 357 MPVFDRVVVTEPDNPRKISADKLKAK-IEKYTGNVEAVEKIEDALERVLEVAEEGNVVIS 415

Query: 465 AG 466
           AG
Sbjct: 416 AG 417


>gi|33862674|ref|NP_894234.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634590|emb|CAE20576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 465

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 31/252 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ +  + +DSR +  G  FV +VG   +GH F+ QA+    +A VV+     +D    +
Sbjct: 26  DQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEVQAAVVAR----KDHH-PV 80

Query: 87  RSNTPILVVDNTRKF---LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               P  +V++T +    L L   R        ++AVTG++GK++    +     RS L+
Sbjct: 81  PEGLPHWIVEDTLEAYQQLGLLHRRQLNV---PVVAVTGSAGKTTTRELI-----RSALT 132

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI 202
                P   + + A +N      P+ L +A S   +     V VE    G+ +  RL   
Sbjct: 133 -----PLGEVLASAGNNNNDVGVPLTLLQAHSDHGA-----VVVEMGMRGIGEIERLSCC 182

Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +      TN+G  H+    ++ A  +AK  +   L P+    +I A D   ++ ++R  
Sbjct: 183 TQPDVAVITNIGNAHVGRLGSRAAIASAKCEITTCLKPR-GVIVIPAGDLLLEDALERIW 241

Query: 262 NAGCRVLSVGYQ 273
               RV+ V  Q
Sbjct: 242 RG--RVIRVAVQ 251


>gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
 gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
          Length = 821

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 152/368 (41%), Gaps = 44/368 (11%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I+ + +DSR +      +F A+   + DGH +IP+  A+G    VV+     +  S    
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPELYARGVRNFVVTDV--PEQLSHYAD 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLS 143
           +N   L V NT K L     RL  KH E     ++ +TG++GK+ V  ++ Q+       
Sbjct: 82  AN--FLQVGNTLKAL----QRLAAKHREQFQVPVVGITGSNGKTVVKEWIYQL------- 128

Query: 144 SFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
              + P   I  S  + ++++  P  +++    + L   G+    +  S  G  +     
Sbjct: 129 ---LSPEKVITRSPRSYNSQIGVPLSVWMMNEHTEL---GIFEAGI--SEMGEMEALQPI 180

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKR 259
           I+   G  TN+G  H +   + Q     K++LF     K+   IIY  D    S  V K 
Sbjct: 181 IQPTIGVLTNIGWAHQENFSSLQGKCMEKLQLF-----KDCDVIIYNGDNELISSCVSKS 235

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              +     S+    + + ++K+        V     G   ++  P   +  + N+L A 
Sbjct: 236 LFTSREIAWSMKDNERPLFIEKIEKDDTGTTVKYRYLGFLKEYRIPFIDDASIENSLNAL 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI- 376
            + + + +    + E +  L  V  R E      + G + ++ ++ S+  SL++ L  + 
Sbjct: 296 AVALYLMVSPEDIAERMAHLEPVAMRLEV--KEGKNGCVLINDSYNSDFASLDIALDFMA 353

Query: 377 -RTITSGR 383
            RT   GR
Sbjct: 354 RRTEDKGR 361


>gi|315179012|gb|ADT85926.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii NCTC 11218]
          Length = 456

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 34/277 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ +A  
Sbjct: 105 VLAVSGTHGKTTTSSMLAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    +        NL  DH D     +A      R F 
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----KRQFH 205

Query: 236 EL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQ 290
            L   +P     +    DA   +V++R    GC   +   G QG++   +K+C   +  Q
Sbjct: 206 HLVRTVPGNGRILAPRQDAALADVLRR----GCWSETEFSGEQGEW-QAEKICK--DGSQ 258

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    + + L GE  V NAL+       +G+   L  E L        R E  
Sbjct: 259 FHVLHQGERVGTVTWDLVGEHNVNNALMTIAAARHVGVTPDLACEALGSFINTKRRLELK 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           GT + G  +Y D+AH   ++E+ L+ +R     R I+
Sbjct: 319 GTEN-GVTVYDDFAHHPTAIELTLEGLRNKVGDRKII 354


>gi|317046895|ref|YP_004114543.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
 gi|316948512|gb|ADU67987.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
          Length = 438

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 101/238 (42%), Gaps = 42/238 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I                   ALS 
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIG----------------LPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L S    +V +E SS  L+      +K  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LKSPAQLYV-LELSSFQLETTY--SLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADD  +  V      A  R +S G      HL       N+QQ +  +
Sbjct: 205 ----NARVCVVNADDGMTMPV----RGADTRCVSFGIDIGDYHL-------NRQQGSTWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             K    L      L G+    NAL A  L  A+ I  A  L+ L     +P RF+ V
Sbjct: 250 RVKGEKVLNTDEMKLVGQHNYTNALAALALADAVNIPRASSLKALTTFTGLPHRFQLV 307


>gi|220904385|ref|YP_002479697.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|254765997|sp|B8IZU2|MURC_DESDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219868684|gb|ACL49019.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 109/271 (40%), Gaps = 29/271 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S    I   +GL      PT  I       RL     +Y A A  +L
Sbjct: 108 IAIAGTHGKTTTTSLTASIFDEAGLD-----PTVIIGG-----RLN----VYGANA--HL 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   ++    S G     L  I ++    TN+  DH+D+++T++A  N+    F   
Sbjct: 152 G-HGEYLIAEADESDGSFLCLLPIINVV----TNVDEDHLDHYKTREA-INSAFVQFMNN 205

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISV 295
           +P     I+  DD    E++ +       VL+ G+        +       ++ QV +  
Sbjct: 206 VPFYGLNIVCGDDPGVLELLPQVKRP---VLTYGFAEDNALRAVPLESGRISRFQVWLHD 262

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E K  +   P PG   + NAL + G  + +GI        L     V  RFEF G   +G
Sbjct: 263 E-KLGEVSLPQPGRHNILNALASIGAAMEVGISFEKCAAGLCGFKGVGRRFEFKG-EKQG 320

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             +  DY H    +   L   R +  GR IV
Sbjct: 321 VTVVDDYGHHPAEIAATLATARQVFEGRRIV 351


>gi|94970658|ref|YP_592706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
 gi|122063234|sp|Q1IKG8|MURD_ACIBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94552708|gb|ABF42632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 453

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 42/281 (14%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAK 172
           P +++A+TG++GK++  S    I Q  G  +   G   T + SFAQ              
Sbjct: 107 PGHVIAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTPAISFAQ-------------- 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
               L++     V +E SS  L+   ++  +    +  N+  DH+D H T + Y  AK R
Sbjct: 153 ----LANDDTWSV-LEISSFQLET--IERFRPEIAAILNITPDHLDRHGTFEKYAAAKER 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHN 287
           +FE     +  AI+ AD+    E+ KR  +   +VL    Q     G F+   K+     
Sbjct: 206 IFENQREHDF-AILNADNEPCVEIAKRVKS---QVLWFSRQHEVKHGTFVREDKIYFRDP 261

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +  I       D L  L G   V N L A  + +A  +    + + + +   V  R E
Sbjct: 262 KGEREIMPVA---DML--LKGAHNVENVLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316

Query: 348 FVGTNSRGGRIYVDYAHTS-----NSLEMILKNIRTITSGR 383
           +  T  +G   Y D   T+      +LE   K +  I  G+
Sbjct: 317 YTAT-VKGVDYYNDSKATNVDATIKALESFSKGVHLILGGK 356


>gi|89902193|ref|YP_524664.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
 gi|109892729|sp|Q21SX0|MURC_RHOFD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89346930|gb|ABD71133.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
          Length = 477

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 127/313 (40%), Gaps = 52/313 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+A+V S+A    +          I VV        L   RL     +  +A+ GT GK
Sbjct: 64  GADAVVTSTAVQADNPEVLSAREKHIPVVPRAVMLAELM--RL-----KTGIAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  +   +GL  +F IG    ++S   + RL                 QG  ++
Sbjct: 117 TTTTSLVASVLAEAGLDPTFVIG--GRLNSAGVNARL----------------GQG-DYI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPK 240
            VEA     D   L+ +  +    TN+  DH+     D+ + +QA+ +     F   +P 
Sbjct: 158 VVEADES--DASFLN-LSPVMAVVTNIDADHMETYGHDFGRLKQAFVD-----FLHRMPF 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI----SV 295
              AI+  DD   ++++ +     C + S G++ G  +    V A+  +   T+     V
Sbjct: 210 YGTAILCTDDPAVRDIVPQVT---CPISSYGFEEGAELRAVNVRAVDGQMHFTVQRRNGV 266

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSR 354
              D D +  L G   V NAL A  + + + I  A+V + L     V  RF+  G   ++
Sbjct: 267 VLPDLDVVLNLAGRHNVLNALSAIAVAVELNIADAVVQKALAGFKGVGRRFQRYGEVRAQ 326

Query: 355 GGRIYV---DYAH 364
            G  +    DY H
Sbjct: 327 DGGTFTLIDDYGH 339


>gi|110634356|ref|YP_674564.1| UDP-N-acetylmuramate--L-alanine ligase [Mesorhizobium sp. BNC1]
 gi|123057820|sp|Q11GS6|MURC_MESSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110285340|gb|ABG63399.1| UDP-N-acetylmuramate--L-alanine ligase [Chelativorans sp. BNC1]
          Length = 465

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NA  A  +   +G+    + + L     V  RF   GT + G  I+ 
Sbjct: 277 DLRLPMPGRHNVSNATAAIAVANELGMGEEAIRKGLAAFGGVKRRFTLTGTWN-GISIFD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    +  +LK  R  TSGRII +
Sbjct: 336 DYGHHPVEIRAVLKAAREATSGRIIAI 362


>gi|257452777|ref|ZP_05618076.1| dihydrofolate synthase [Fusobacterium sp. 3_1_5R]
 gi|257466855|ref|ZP_05631166.1| dihydrofolate synthase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 409

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 143/354 (40%), Gaps = 77/354 (21%)

Query: 113 HPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST----------------- 152
           HPE    I+ + GT+GK S A+ +++I   +G   +Q+G  ++                 
Sbjct: 28  HPERAYKIIHIAGTNGKGSTATTLERILLEAG---YQVGKYTSPHILKFNERIIANGKQI 84

Query: 153 -----------ISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                      +    ++ ++  T   I  A   SY   + + +V +E    G    RLD
Sbjct: 85  SDEEIEKYYYQVEKIMEEEKIDATFFEITTAMMFSYFRDKKLDYVVLETGMGG----RLD 140

Query: 201 GIKLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
              +        TN+  DH +Y      Y  AK +     + K  P +I AD    +E +
Sbjct: 141 ATNVSQAELCIITNVSLDHTEY-LGDSIYKIAKEKAG---IIKNCPKVIVADQ--QEEFL 194

Query: 258 KRAHNAGCRVLSV-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +        V++V        YQ  F           K    I +EGK++ F   L G++
Sbjct: 195 QAILEEKAEVINVLNKYADATYQLDF----------EKFMTEIKIEGKNYHF--SLFGDY 242

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q +N L A      +GI   ++    EK+ V   RFE     +R   + +D AH  + + 
Sbjct: 243 QYHNFLCAYEAAKQLGISEEIIQRAAEKV-VWECRFEIA---ARQPLVILDGAHNPDGVR 298

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPR 421
            ++K ++       + ++     D+D   +P++  +A +++D  I+T   DNPR
Sbjct: 299 ELVKIVKQHYHKTEVAILTSILKDKDI--KPMLEMLA-EVSDDIILTSLADNPR 349


>gi|325925686|ref|ZP_08187064.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
 gi|325543902|gb|EGD15307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
          Length = 477

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 125/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T S G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTSSGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|90423693|ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105707|gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 479

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 149/372 (40%), Gaps = 41/372 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR +  G  + AI G   DGH F+  A+  GA   VV  A     F A    + P+
Sbjct: 31  ISIDSRTLIPGDAYFAIRGEVHDGHAFVAAALNAGAGLAVVERAQR-DKFPA----DAPL 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+    L   +     +    ++A+TG+ GK+S    ++ +    G +       ++
Sbjct: 86  LLVDDVLAALVDLSRASRARLGAKVIAITGSVGKTSTKEALRAVFGAQGETH------AS 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           ++SF  +N    P  +    A +  +    G+ H        G  Q  +  ++      T
Sbjct: 140 VASF--NNHWGVPLSLARCPASAKFAVFEIGMNH-------PGEIQPLVALVRPHVAIIT 190

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLS 269
            +   H+++  + +A  +AK  +F  L P  +  ++  D+     + KRA   G  R++S
Sbjct: 191 TVEPVHLEFFDSVEAIADAKAEIFTGLEPNGA-VVLNRDNPQFARLRKRAKAHGISRIVS 249

Query: 270 VGYQGKF------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            G   K       I L+  C+      V  +V G+D  +   +PG     N+L       
Sbjct: 250 FGADEKADARLLDIALQPECS-----AVRAAVFGEDVTYKLGIPGRHMAINSLAVLAAAE 304

Query: 324 AIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEM-----ILKNIR 377
            +G D AL    L ++    GR        + G    +D ++ +N   M     +L    
Sbjct: 305 LVGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANPASMAAAINVLGQAA 364

Query: 378 TITSGRIIVVFG 389
               GR I V G
Sbjct: 365 VGPQGRRIAVLG 376


>gi|260770966|ref|ZP_05879895.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
 gi|260614203|gb|EEX39393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
          Length = 456

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 34/277 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ +A  
Sbjct: 105 VLAVSGTHGKTTTSSMLAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    +        NL  DH D     +A      R F 
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----KRQFH 205

Query: 236 EL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQ 290
            L   +P     +    DA   +V++R    GC   +   G QG++   +K+C   +  Q
Sbjct: 206 HLVRTVPGNGRILAPRQDAALADVLRR----GCWSETEFSGEQGEW-QAEKICK--DGSQ 258

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    + + L GE  V NAL+       +G+   L  E L        R E  
Sbjct: 259 FHVLHQGERVGTVTWDLVGEHNVNNALMTIAAARHVGVTPDLACEALGSFINTKRRLELK 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           GT + G  +Y D+AH   ++E+ L+ +R     R I+
Sbjct: 319 GTEN-GVTVYDDFAHHPTAIELTLEGLRNKVGDRKII 354


>gi|281412288|ref|YP_003346367.1| UDP-N-acetylmuramate/alanine ligase [Thermotoga naphthophila
           RKU-10]
 gi|281373391|gb|ADA66953.1| UDP-N-acetylmuramate/alanine ligase [Thermotoga naphthophila
           RKU-10]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 279 LKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           L+   A   +Q+  +   GK + +F   +PG   V NAL    L  ++G D A  LE LE
Sbjct: 233 LEMRSASRAEQKAVVEKNGKRYLEFKLKVPGFHNVLNALAVIALFDSLGYDLAPALEALE 292

Query: 338 KLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTI-TSGRIIVVFG----C 390
               V  RF  +  +     IYV  DYAHT + +  +L+  + +  + +I+V+F      
Sbjct: 293 TFRGVHRRFS-IAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYS 351

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD 417
             +R+ G      K AL LAD  +VT+
Sbjct: 352 RLEREDGN---FAK-ALQLADEVVVTE 374


>gi|164688450|ref|ZP_02212478.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
 gi|164602863|gb|EDQ96328.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
          Length = 175

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 8   YKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           Y    EL+N  S  +         INE+  DSR      +F AI+G   DGH FI  AI 
Sbjct: 3   YLSIEELVNATSGDLTSKSEEVTSINELVIDSRIANKNSVFFAIIGESLDGHKFINSAIE 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G + I+ + + + +     I  +  I+ V+NT   L   A     K     + +TG+ G
Sbjct: 63  NGCKTIIKNKSNNFE----IIGEDLNIIEVENTEFALGDIARYYKSKFDIPYIGITGSVG 118

Query: 126 KSSVASFV 133
           K+S    V
Sbjct: 119 KTSTRDMV 126


>gi|148269829|ref|YP_001244289.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga petrophila RKU-1]
 gi|166224745|sp|A5IKJ0|MURC_THEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147735373|gb|ABQ46713.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga petrophila
           RKU-1]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 279 LKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           L+   A   +Q+  +   GK + +    +PG   V NAL    L  ++G D A VLE LE
Sbjct: 233 LEMRSASRAEQKAVVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALE 292

Query: 338 KLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTI-TSGRIIVVFG----C 390
           +   V  RF  +  +     IYV  DYAHT + +  +L+  + +  + +I+V+F      
Sbjct: 293 EFRGVHRRFS-IAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYT 351

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD 417
             +R+ G      K AL LAD  +VT+
Sbjct: 352 RLEREDGN---FAK-ALQLADEVVVTE 374


>gi|89900108|ref|YP_522579.1| cyanophycin synthetase [Rhodoferax ferrireducens T118]
 gi|89344845|gb|ABD69048.1| Cyanophycin synthetase [Rhodoferax ferrireducens T118]
          Length = 858

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 126/313 (40%), Gaps = 33/313 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S+F     G+ P  ++AVTGT+GK++    +  +  ++GL   ++G T+T   +    R+
Sbjct: 460 SMFDQHENGRIP--LVAVTGTNGKTTTVRLISHLLAQNGL---RVGMTNTDGVYIAGQRI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219
            T        A + L    V    +E +  G+ +  L   +      TN+G  DH+  +Y
Sbjct: 515 DTGDCSGPKSARNVLQHPDVDAAVLETARGGMLREGLAFDRCDVAVVTNVGSGDHLGLNY 574

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV------------MKRAHNAGCRV 267
             T +     K R+  + +  +  A++ A D     +            M R H      
Sbjct: 575 ITTVEDLAVLK-RVIVQNIASDGVAVLNAADPIVVSMARHCSASIIFFAMDRHHPVMATH 633

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAI 325
           L+ G +  ++    + A   K Q  +++     D      G   FQ+ N + +A    A+
Sbjct: 634 LAQGRRAVYVEGDHLVAAEGKVQHQMALS----DIPISRRGTIGFQIENVMASAAAVWAL 689

Query: 326 GIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           G+    +   L           GRF     + RG  +  DY H  +++  +++ + ++ S
Sbjct: 690 GVGWETIKLGLASFINNNDNALGRFNLF--SYRGATVIADYGHNPDAIAALVQAVASMPS 747

Query: 382 GRIIVVFGCGGDR 394
            R  VV    GDR
Sbjct: 748 KRRTVVISGAGDR 760


>gi|229551598|ref|ZP_04440323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315063|gb|EEN81036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
          Length = 463

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 48/370 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR ++ G +FV + G + DGH FIP A A GA A  V+  +        + +  P 
Sbjct: 30  VAFDSRRLKPGMLFVPLHGER-DGHEFIPAAAAAGAVATFVAEDH------LPMTTKLPT 82

Query: 93  LVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           LVV +    +   A   L  K    ++A+TG++GK++       I       + Q     
Sbjct: 83  LVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVK 136

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA---- 206
           T  ++  +N +  P        ++ LS +  T V V     G+D+  +L  +  +A    
Sbjct: 137 TPDNY--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSSLAEPDV 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEVMKRAH 261
              T +G  HI++ +T+    +AKM + + L  KE    I+  D     + +K+V +   
Sbjct: 185 AVITMIGEAHIEFFKTRAKIADAKMEITDGL--KEDGTFIFNGDEPLLVSRAKQVTQSQE 242

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G    +      F H   +    N  + T+  +  +  F  P+ GE+ V NAL A  +
Sbjct: 243 TFGLHPENT----LFAH--SISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
                +    + + L    V   R +++     G +I  D Y     +++ ++ +     
Sbjct: 296 GRRFHVKPEAMQKALAHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFQ 354

Query: 380 TSGRIIVVFG 389
           T+GR I V G
Sbjct: 355 TAGRHIAVLG 364


>gi|254751530|ref|ZP_05203567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Vollum]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 15/161 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA
Sbjct: 4   KKFEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +   +Y       +     PI+ VD+T   L   A     +    ++ +TG++GK++
Sbjct: 62  IASLWKKSY------GSPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTT 115

Query: 129 VASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRL 162
               V+ I + +       G  + QIG   TI    +D  +
Sbjct: 116 AKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEI 156


>gi|229818496|ref|ZP_04448777.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
 gi|229784144|gb|EEP20258.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
          Length = 491

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 152/365 (41%), Gaps = 45/365 (12%)

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ++V++  K +SL ++  YG  +H   ++ +TGT GK++ A   Q I     L+ +  G  
Sbjct: 114 VIVNDVHKAMSLLSASFYGLPQHELTVVGITGTKGKTTTAFLAQAI-----LNEYSQGRC 168

Query: 151 STISSF--------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  SS            ++LTTP  +   + +      G+ ++ +E SS     +R+ G+
Sbjct: 169 ALFSSVNLCLDGHTMLPSKLTTPESLDSFRMMRQAVDNGMKYLVMEVSSQAYKVNRVYGL 228

Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                +F N+  DHI    H T + Y   K ++        S  ++   +     +++  
Sbjct: 229 TFDVAAFLNISPDHISPIEHPTLEDYLYCKRQII-----ANSRTLVLGSECRHIGLLRE- 282

Query: 261 HNAGCRVLSVGYQGKFIHLKK------VCAIH---NKQQVTISVEGKDF-DFLFPLPGEF 310
            +A    + V   G    + +       CA       +   + ++G D  +F   L G+F
Sbjct: 283 -DAAVHQVPVSEFGVLDAMPRDGADDQTCAWPADGTHRAYRMRLDGNDLGEFSLDLDGDF 341

Query: 311 QVYNALVAAGLCIAIGI----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
              NAL A  +  A G+    ++   LEH +    VPGR              VDYAH  
Sbjct: 342 NYKNALAAIAIAHAAGVPADCEALRALEHTK----VPGRMMQYRDERTSTIAIVDYAHNY 397

Query: 367 NSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           +S+  +L  + T     + RI +V G  G++   +R  + K A D     + T ++  +E
Sbjct: 398 DSVVKLLDYVSTRYGERNPRITLVAGSAGNKAIDRREGIVKAAQDRISRFVFTAEDTDTE 457

Query: 424 DPEKI 428
             E I
Sbjct: 458 PYEDI 462


>gi|224368380|ref|YP_002602543.1| MurF [Desulfobacterium autotrophicum HRM2]
 gi|223691096|gb|ACN14379.1| MurF [Desulfobacterium autotrophicum HRM2]
          Length = 486

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 130/342 (38%), Gaps = 64/342 (18%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL-QDFSATIRSNTP 91
           VS+DSR I    +FVA+ G + DGH FI   + +G    VV     + +D    +     
Sbjct: 32  VSTDSRTIGVQDLFVALEGERFDGHTFIADLVKRGVRGFVVKKGQKIPKDVPGCL----- 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSS 144
              VDNT   L   A     +    ++A+TG++GK+S      +I  R        G  +
Sbjct: 87  FFSVDNTLTALGDLARFQRLRAGVRVVAITGSNGKTSTRKMTGEIFGRKFNTLTTRGNLN 146

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +IG   T+   + D+                        V     +HG + HRL  I L
Sbjct: 147 NEIGLPLTLLGLSLDHEWA---------------------VVEMGMNHGGEIHRLGSIAL 185

Query: 205 I-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK---ESPAIIYADDA----YSKEV 256
              G  TN    H++   T +    AK     ELLP       A++  DD     +S  V
Sbjct: 186 PDIGVITNTSHCHLEGLGTVEGVARAK----AELLPHVRVHGSAVLNLDDPRFPIFSAAV 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------L 306
             RA+ A   ++        +      AI +++      EG  F  + P           
Sbjct: 242 --RANTAIENIVCFSMDRLNMDCVGASAIADRE------EGMGFTLVSPSEGTREVFLHT 293

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           P  F V NAL AAG  +A GI   ++ + LE     PGR   
Sbjct: 294 PARFMVSNALAAAGAALAAGISMDVIKQGLEAFEPEPGRMHL 335


>gi|227815000|ref|YP_002815009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
 gi|227004988|gb|ACP14731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
          Length = 246

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 15/161 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA
Sbjct: 7   KKFEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +   +Y       +     PI+ VD+T   L   A     +    ++ +TG++GK++
Sbjct: 65  IASLWKKSY------GSPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTT 118

Query: 129 VASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRL 162
               V+ I + +       G  + QIG   TI    +D  +
Sbjct: 119 AKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEI 159


>gi|227497588|ref|ZP_03927811.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
 gi|226832957|gb|EEH65340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
          Length = 506

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 28/162 (17%)

Query: 113 HPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           HPE   + VTGT GK++    +  I   +GL +  +G             +  P+     
Sbjct: 126 HPEVPWITVTGTDGKTTTVGMLSAILTAAGLEAPAVG------------NIGVPT----- 168

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             +S +++ G   ++VE SS  L  H    +  +A +  NL  DH+D+H   +AY   K 
Sbjct: 169 --ISVVAAGGAQALAVELSSFQL--HTTHSLSPLAAACLNLSADHLDWHGGMEAYAADKS 224

Query: 232 RLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVG 271
           R++         A +Y  AD A  + V +     GCR +  G
Sbjct: 225 RVYTH----AQRAAVYNLADPATLRMVEQADVVEGCRAIGFG 262


>gi|254428710|ref|ZP_05042417.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
 gi|196194879|gb|EDX89838.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
          Length = 474

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 119/325 (36%), Gaps = 54/325 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S+A + ++          I VV   +    L   R       + +AV GT GK
Sbjct: 75  GADVVVTSTAVNTENLEVAAAHERRIPVVPRAQMLAELMRFR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S    I   +GL  +F IG    ++S   + RL             YL ++     
Sbjct: 128 TTTTSLTAAIMAEAGLDPTFVIG--GRLNSAGTNARLGQS---------RYLVAE----- 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+ +  L    +  I       TN+  DH+  +    A        F   LP    A+
Sbjct: 172 ADESDASFLHLQPMSAI------VTNIDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAV 225

Query: 246 IYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +  DD   ++++ R          + +A  R  +V   G   H + V A           
Sbjct: 226 MCVDDPVVRKLLPRVNRQVIRYGFSEDADLRAENVRQDGMVTHFRVVRA----------- 274

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354
           EG+  +    +PG   V NAL A  +    G D   ++  L     V  RF+  G  +  
Sbjct: 275 EGEPLEVSLNMPGRHNVLNALAAIAVSADEGADDEAIIRGLNNFTGVGRRFDVQGEYHFE 334

Query: 355 GGRIYV--DYAHTSNSLEMILKNIR 377
           GG   +  DY H    +   +  IR
Sbjct: 335 GGSATLVDDYGHHPREVAATIDAIR 359


>gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|315022146|gb|EFT35175.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Riemerella anatipestifer RA-YM]
          Length = 814

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 122/326 (37%), Gaps = 67/326 (20%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           FVAI   K +G  +I  A+ +G E ++VS   +L +       +   L+VD+T KFL   
Sbjct: 42  FVAIKTKKNNGEKYIASAVEKGIE-LIVSEHKTLDN------EHLSWLIVDDTVKFLQKL 94

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQI------CQRSG----------LSSFQIGP 149
           A      H    + +TG++GK+ V  ++ Q       C +S           LS   I P
Sbjct: 95  AHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCVKSPKSFNSQIGLPLSLLNIKP 154

Query: 150 TSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
              +  F    ++ N +TT   I+  K                                 
Sbjct: 155 EHKVGIFEVGISEPNEMTTLETIFSPKI-------------------------------- 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  T++G  HI   ++++   + K+ LF     K+S +II+  D            +  
Sbjct: 183 -GVLTHIGSAHISNFKSEKHLVDEKISLF-----KDSESIIFNGDNILVSNKINTLYSSK 236

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            ++S G+ +   IH+        +Q +T+    K F F      E  + N L    +   
Sbjct: 237 NLISYGFNKDNNIHISSNWK-DRQQPITVQCFDKSFSFPAQQRDEATLSNVLAIIAVMHL 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG 350
           +   +  ++E +  L  V  R E V 
Sbjct: 296 LEFSTEKMIEKINNLKAVEMRLESVN 321


>gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
 gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
          Length = 487

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 152/376 (40%), Gaps = 34/376 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   S D+R ++ G +F AI G   DGH F+  A+ +      V +A    +F     
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALEK-GAGAAVVAAARANEFEGV-- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              P+L V    +   L A R  G     +    I+AVTG+ GK+     ++ +    G 
Sbjct: 82  --GPVLAVPGEDEDPVLEAMRRLGLAARARTGAAIVAVTGSVGKTGTKEALRHVLSAQGA 139

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG- 201
           +       ++++S+  +N      P+ LA+ +   +  GV  + +   +HG +   L   
Sbjct: 140 TH------ASVASY--NNHWGV--PLTLAR-MPEQTRFGVFEIGM---NHGAEILPLTAM 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T +   HI++ ++  A  +AK  +F  L P    A+I  D+   + ++  AH
Sbjct: 186 VRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPG-GVAVINRDNPNYERLLAHAH 244

Query: 262 NA-GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +   RV++ G +    +   ++    +   V  SV G    +    PG     N+L   
Sbjct: 245 ASRAGRVITFGEHAAADVRANRILTRPDVSVVDASVMGVPLTYQLGTPGRHVAMNSLGVL 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEM-----IL 373
               A+G D A     L  L    GR E        G  + +D ++ +N   +      L
Sbjct: 305 ACIHALGADLARAALSLAALKPPVGRGERTALRVGDGEAFLIDESYNANPASIRAALATL 364

Query: 374 KNIRTITSGRIIVVFG 389
             I T   GR I V G
Sbjct: 365 AGIETGAKGRRIAVLG 380


>gi|332295506|ref|YP_004437429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178609|gb|AEE14298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 464

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 106/262 (40%), Gaps = 53/262 (20%)

Query: 109 LYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTP 165
           ++G  P+  N + VTGT+GK++V  ++    + + +  +  G   T +S    D  + T 
Sbjct: 107 VFGLLPDGVNTIGVTGTNGKTTVTEWIGYGFEVAKMPYYVAGNVGTPLSEIIYD--IVTG 164

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S + L                 E SS+ ++      +K      TNL  DHID +     
Sbjct: 165 SNLVL-----------------ELSSYQIENSIF--LKPKIAMITNLTLDHIDRYANLDE 205

Query: 226 YFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           YFNAK+ LF+    +E+   IY  DD Y ++ +K       ++L+V  +  F        
Sbjct: 206 YFNAKVHLFKN---QENGYSIYNKDDPYLEKNIKNL-TLKTKILNVSKRKDF---SIAGV 258

Query: 285 IHNKQQVTISVEGKDFDFL-------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           I NK  V       + DF+         L GE  + NAL  A         S+L L  +E
Sbjct: 259 IENKIFVK-----DNLDFVKIIDLSDLSLKGEHNIENALFVA---------SSLYLSSVE 304

Query: 338 KLHVVPGRFEFVGTNSRGGRIY 359
             H+      F G   R  R Y
Sbjct: 305 PKHIEKALSTFSGVEHRQERFY 326


>gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
 gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
          Length = 792

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 173/426 (40%), Gaps = 66/426 (15%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+   + DGH +I     +G    VV     + +   T+      L V +T   L  
Sbjct: 15  LFFALKTQRNDGHRYIQDLYNRGVRQFVVEQ---VPEAYETLYPQANFLRVPHTLAALQR 71

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRL 162
            A R   +    I+ +TG++GK+ V  ++ Q+          + P+  I  S  + ++++
Sbjct: 72  LAERHRDEFSLPIVGITGSNGKTMVKEWLYQL----------LLPSQRIVRSPRSYNSQI 121

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
             P  ++L   L+  +  G+    +  S  G      D I+   G  T+LG  H      
Sbjct: 122 GVPLSVWL---LNEQTEVGIFEAGI--SQPGEMMALRDIIQPTIGVLTSLGAAH------ 170

Query: 223 QQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHL 279
           Q+ + + + +  E+L L  ++ A++Y +D+      ++R +  G ++  S   Q    ++
Sbjct: 171 QENFRSMEEKCMEKLELMHDTEAMVYCSDNDIVSRCIRRMNYKGEKISWSTCDQQAAFYV 230

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K V   H    +T   + ++  F  P   E  + + +  A + + +G+    + + + KL
Sbjct: 231 KSVENSH----ITYIWKEEENCFDIPFIDEASIEDCITCAAVALRLGLTPGDLADRMPKL 286

Query: 340 HVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V  R E V    RG  +  D Y    NSL++ L  +                     +
Sbjct: 287 EPVAMRLE-VKEGQRGCILINDSYNSDINSLDIALDFM--------------------NR 325

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAI 453
           R  + K  L L+D+            PEK+ A++       GI  FI  G ++ A    I
Sbjct: 326 REELKKRTLILSDMF------QSGLSPEKLYAQVSELAVKRGITKFIGIGAQLTAQADKI 379

Query: 454 EMLNKQ 459
           ++ +KQ
Sbjct: 380 QIADKQ 385


>gi|91776620|ref|YP_546376.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
 gi|122985406|sp|Q1GZ02|MURC_METFK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91710607|gb|ABE50535.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
          Length = 475

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 143/371 (38%), Gaps = 48/371 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++  S +  I   +G+  +F IG    + +   + RL T   I    A + 
Sbjct: 108 IAIAGTHGKTTTTSLIASILAEAGMDPTFVIG--GRLEASGSNARLGTGEYIV---AEAD 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S     H++                  I    TN+  DH+D +             F +
Sbjct: 163 ESDASFLHLTP-----------------IISVVTNIDADHMDTYGHDFERLKGAFVEFLQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS- 294
            LP    A++  DD   + ++ +      +V+  G+ +   I    V A + +   T++ 
Sbjct: 206 RLPFYGMAVVCIDDPNVRAILPQISK---QVMPYGFSEEARIRASNVQAENGRMHFTVTR 262

Query: 295 VEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-T 351
           + G    FD    LPG   V NAL A  +   + +    +++ L +   V  RFE  G  
Sbjct: 263 INGVTTTFDVTLNLPGRHYVLNALAAIAVASELNVPDGAIIKALAEFKGVGRRFERYGEV 322

Query: 352 NSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--A 406
            +R G  +    DY H    +  ++   R    GR +V+      R    R         
Sbjct: 323 PARDGGYFTLVDDYGHHPAEMNAVIAAARDAFPGRRLVL-AFQPHRYTRTRDCFEDFVKV 381

Query: 407 LDLADIAIVTDDNPRSEDP-------EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLN 457
           L  AD+ ++T+     E P         +RA  + G   P F+E     E  ++ ++M  
Sbjct: 382 LSSADVVLLTEVYAAGEAPIVAADGRSLVRAIRVAGKVEPLFVETPQ--ELPQSILDMAQ 439

Query: 458 KQDVLVVAGKG 468
             DV++V G G
Sbjct: 440 DGDVVIVMGAG 450


>gi|222099426|ref|YP_002533994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
 gi|254766063|sp|B9K6P5|MURD_THENN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221571816|gb|ACM22628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
          Length = 432

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 56/260 (21%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E ++ +TGT+GKS+ A+ +       GL  F  G               TP+   L +  
Sbjct: 102 EKVIGITGTNGKSTSAALMHHALSHRGLKVFLGG------------NFGTPAVEALREDY 149

Query: 175 SYLSSQGVTHVSVEASSHGL---DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            Y          +E SS  L   ++ R+    L+     N+  DH+D+H + + Y N+K+
Sbjct: 150 DY--------YVLEVSSFQLFWCERPRVSRFVLL-----NISEDHLDWHSSFKEYLNSKL 196

Query: 232 R--LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           +   F+E    E    +Y  +  + E + R      + +    +  F+           +
Sbjct: 197 KPAFFQE----EKDTFVYNKNIETLEDLSRVK---PKKIPFWTEDTFV-----------E 238

Query: 290 QVTISVEGKDFDFLFPLPGEFQVY---NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +  + ++GK     FPLPG + +    N L  + L   +  D    L+ L     +P R 
Sbjct: 239 ENRLVLQGKS----FPLPGSYPLQMKENILAVSVLYNELFGDVEGFLDSLRSFKPLPHRM 294

Query: 347 EFVGTNSRGGRIYVDYAHTS 366
           EF+G   +G   Y D   TS
Sbjct: 295 EFLG-KIKGRSFYNDSKATS 313


>gi|160896915|ref|YP_001562497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
 gi|160362499|gb|ABX34112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
          Length = 650

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 39/161 (24%)

Query: 102 LSLFA------SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTST 152
           L LFA      S  +G  P  +L +TGT+GK++V S   Q+ + +GL    +  IGPT  
Sbjct: 248 LDLFAMALKALSAAHGYRP-TVLGITGTNGKTTVTSLTGQLLEHAGLRVAVAGNIGPTLL 306

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGSF 209
            +     +  T P    L                       L   +LDG+++    A + 
Sbjct: 307 DTLTQAIDAETLPQAWVLE----------------------LSSFQLDGVQMFEPTAAAV 344

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAII 246
            N+ +DH+D+H + +AY +AK  +F      +L +E P ++
Sbjct: 345 LNITQDHLDWHGSLRAYADAKACIFGSSGTMVLNREDPEVM 385


>gi|150397285|ref|YP_001327752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium
           medicae WSM419]
 gi|150028800|gb|ABR60917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sinorhizobium
           medicae WSM419]
          Length = 463

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + SG  +   G   T                     L+  
Sbjct: 117 IAITGTNGKSTTTALIAHILRASGRDTQLGGNIGT-------------------AVLTLE 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q      VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 158 PPQADRFYVVECSSYQIDLAPT--LDPTAGILLNLTPDHLDRHGTMQHYADIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     AI+  DD+ S  +  R   AG +V+ +
Sbjct: 212 VAGSGTAIVGVDDSLSSLIADRVERAGTKVVRI 244


>gi|170288515|ref|YP_001738753.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga sp. RQ2]
 gi|229620441|sp|B1L9S2|MURC_THESQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170176018|gb|ACB09070.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga sp. RQ2]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 279 LKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           L+   A   +Q+  +   GK + +    +PG   V NAL    L  ++G D A VLE LE
Sbjct: 233 LEMRSASRAEQKAVVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALE 292

Query: 338 KLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTI-TSGRIIVVFG----C 390
           +   V  RF  +  +     IYV  DYAHT + +  +L+  + +  + +I+V+F      
Sbjct: 293 EFRGVHRRFS-IAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYS 351

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD 417
             +R+ G      K AL LAD  +VT+
Sbjct: 352 RLEREDGN---FAK-ALQLADEVVVTE 374


>gi|157803837|ref|YP_001492386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
 gi|157785100|gb|ABV73601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
          Length = 455

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 33/241 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N +AV GT+GKS+  + +  I   +GL  + +     + +    N               
Sbjct: 105 NFIAVIGTNGKSTTTALISHILNSNGLD-YPVAGNIGVPALKAKN--------------- 148

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S  G     +E SS  LD  +    K+      N+  DH+D H+    Y  AK ++F 
Sbjct: 149 --SKDGYV---IELSSFQLDLVKTFTAKI--AVLLNITPDHLDRHKDMNGYIKAKSKIFN 201

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             + K S A+I  D+ Y +++  +      R+  + +    I  K +  ++N   +  S 
Sbjct: 202 R-MDKNSYAVINIDNDYCRKIFMKLQQEQ-RIKLIPFSVTKILEKGISVVNN--IINYSF 257

Query: 296 EGKDFDFLFPLPGEFQ-VYNAL-VAAGLCIA--IGI-DSALVLEHLEKLHVVPGRFEFVG 350
            G   +F  P     Q ++N   +AA   +A  +G+ +S  ++E +     +P R +++G
Sbjct: 258 FGNS-NFKLPFNKNLQGIHNCENIAASYAVAKIMGLEESTKIIEAISSFQSLPHRMQYIG 316

Query: 351 T 351
           +
Sbjct: 317 S 317


>gi|330443877|ref|YP_004376863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
 gi|328806987|gb|AEB41160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
          Length = 435

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 158/384 (41%), Gaps = 59/384 (15%)

Query: 23  MQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           + WR  +KI+ V+ DSR +Q G +F A+ G   DGH F+  A   GA A V+S  Y   +
Sbjct: 6   LYWRSGKKISGVAIDSRQVQPGDLFFALPGKTTDGHNFLQHAAQAGAVAAVISQEYKGDN 65

Query: 82  FSATIRSNTPILVVDNTRKFLS---LFASRLY-GKHPENILAVTGTSGKSSVASFVQQIC 137
           +          + V++ RK L    L   RL+ GK    I+ ++G+ GK++   F     
Sbjct: 66  YGLE------FVRVEDPRKALQEAGLNKGRLFQGK----IIGISGSLGKTTTKEFSNVFL 115

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLD 195
             S +    + P S       +++LT P  I +A       L   GV        S   D
Sbjct: 116 --SSVYRVFMSPKSY------NSQLTVPLSILMADGDEDFLLLEMGV--------SEPKD 159

Query: 196 QHRLDGI-KLIAGSFTNLGRDH-IDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYAD 249
            H L  I +      T++   H + + +  Q     K ++ +    +LLPK+SP      
Sbjct: 160 MHNLLSIVQPEVAVITHIATQHTMHFPRGIQEIVEEKRQILQGSSLQLLPKDSP------ 213

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
             + K++ + + +A     S   Q      K +    +   VTI    +D       P +
Sbjct: 214 --WYKDLCEVSPSAEKFSFSFHDQAADFCYKSL----DSHGVTIQTPDEDIYLPIAFPYQ 267

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L++  L   +      ++  L  L + P RFE    + R G   ++ A+ +   
Sbjct: 268 PAYANLLISVSLAWLLETPLEHLISSLPDLKLPPMRFE---QSLRNGIHVINDAYNACP- 323

Query: 370 EMILKNIRTITS----GRIIVVFG 389
           E +L  +  + S    G++I++ G
Sbjct: 324 EAMLAALEALPSPSNGGKVILILG 347


>gi|315918003|ref|ZP_07914243.1| folylpolyglutamate synthase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059318|ref|ZP_07923803.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_5R]
 gi|313684994|gb|EFS21829.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_5R]
 gi|313691878|gb|EFS28713.1| folylpolyglutamate synthase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 414

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 143/354 (40%), Gaps = 77/354 (21%)

Query: 113 HPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST----------------- 152
           HPE    I+ + GT+GK S A+ +++I   +G   +Q+G  ++                 
Sbjct: 33  HPERAYKIIHIAGTNGKGSTATTLERILLEAG---YQVGKYTSPHILKFNERIIANGKQI 89

Query: 153 -----------ISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                      +    ++ ++  T   I  A   SY   + + +V +E    G    RLD
Sbjct: 90  SDEEIEKYYYQVEKIMEEEKIDATFFEITTAMMFSYFRDKKLDYVVLETGMGG----RLD 145

Query: 201 GIKLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
              +        TN+  DH +Y      Y  AK +     + K  P +I AD    +E +
Sbjct: 146 ATNVSQAELCIITNVSLDHTEY-LGDSIYKIAKEKAG---IIKNCPKVIVADQ--QEEFL 199

Query: 258 KRAHNAGCRVLSV-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +        V++V        YQ  F           K    I +EGK++ F   L G++
Sbjct: 200 QAILEEKAEVINVLNKYADATYQLDF----------EKFMTEIKIEGKNYHF--SLFGDY 247

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q +N L A      +GI   ++    EK+ V   RFE     +R   + +D AH  + + 
Sbjct: 248 QYHNFLCAYEAAKQLGISEEIIQRAAEKV-VWECRFEIA---ARQPLVILDGAHNPDGVR 303

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPR 421
            ++K ++       + ++     D+D   +P++  +A +++D  I+T   DNPR
Sbjct: 304 ELVKIVKQHYHKTEVAILTSILKDKDI--KPMLEMLA-EVSDDIILTSLADNPR 354


>gi|116253050|ref|YP_768888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|118595681|sp|Q1ME31|MURD_RHIL3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115257698|emb|CAK08796.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 470

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G  +   G   T         LT   P    KA  Y 
Sbjct: 117 IAITGTNGKSTTTALIAHILKSAGYDTQLGGNIGTAV-------LTLDPP----KAERYY 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 166 V--------VECSSYQIDLAPT--LNPSAGILLNLTPDHLDRHGTMQHYADIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     AI+  DD++S  +  R   AG +V+ +
Sbjct: 212 VAGSDVAIVGVDDSHSALIADRVERAGVKVVRI 244


>gi|28493196|ref|NP_787357.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei str.
           Twist]
 gi|28476237|gb|AAO44326.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei str.
           Twist]
          Length = 475

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 20/191 (10%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLS 269
           N+  DH+DY+ +Q A    +   F+  L     A+I  DDA   K   K   ++G R   
Sbjct: 189 NISMDHVDYYGSQSAL---EGSFFDFSLRSSDAAVISLDDAACIKIASKLLQSSGSR--- 242

Query: 270 VGYQGKFIHLKK-----VC----AIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAA 319
            G   + I   K     VC       N  + T+  EG+ ++  F  L GE    N   A 
Sbjct: 243 -GPSKRVITFGKNRSADVCLYEMGCMNPARFTVLYEGRFYNAGFKGLFGEHHAVNTCAAL 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            + + +G   +  LE +        R E  F      G +I+ DYAH    +   L  IR
Sbjct: 302 SVLLCLGYGISESLEAILSFSGTRRRLELHFDSGGKDGIKIFDDYAHHPREIRTALTAIR 361

Query: 378 TITSGRIIVVF 388
           ++   R+I +F
Sbjct: 362 SVQHTRLIALF 372


>gi|311898890|dbj|BAJ31298.1| putative UDP-N-acetylmuramate--L-alanine ligase [Kitasatospora
           setae KM-6054]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 10/222 (4%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKR-AHNAGCRVLSVGY-QG 274
           H    A      + FE  + +  P    ++ AD   ++E+ +R A  AG  V++VG  + 
Sbjct: 189 HHANYASIEEIHQSFETFVGRIQPGGTLVVSADHEGARELTRRVAGRAGLNVVTVGAAED 248

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
             + +  V A     +VT+ + G+   F   +PG    +NA+ A    +A+G+ +  + +
Sbjct: 249 ADVRVLAVAAHGMTSEVTVELGGERLVFTVSVPGRHYAHNAVAALAAGVALGVPAEGLAK 308

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG-G 392
            L     V  R +  G  +RG ++   YAH    +   L+ IR    +GR++VVF     
Sbjct: 309 ALGAYTGVRRRLQLKG-EARGTQVIDSYAHHPTEMAADLEAIREAAGAGRVLVVFQPHLF 367

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433
            R Q     MG +AL LAD ++V D  P  EDP   + AE+I
Sbjct: 368 SRTQQLAEEMG-LALALADASVVLDIYPAREDPIPGVTAELI 408


>gi|78212659|ref|YP_381438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9605]
 gi|78197118|gb|ABB34883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9605]
          Length = 449

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 34/228 (14%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR +QAG  FV +VG + DGH F+ Q     A+A VVS  ++           
Sbjct: 26  LGRVCTDSRQLQAGDFFVPLVGERFDGHHFLEQLPEHKAQAAVVSRCWA--------EPL 77

Query: 90  TPILV---VDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            P L+   VD+T       A    R  GK    ++AVTG++GK++    +     R+ L+
Sbjct: 78  PPDLLHWRVDDTLLAYQQLALLHRRALGK---PLVAVTGSAGKTTTRELI-----RAALA 129

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLD-G 201
                P   I +   +N      P+ +  A +  ++     + +E    GL +  RL   
Sbjct: 130 -----PLGAIQASEGNNNNDVGVPLTVLGATAADAA-----LVIEMGMRGLGEIERLSYC 179

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            +      TN+G  HI    +++A   AK  +   L P+ +  I   D
Sbjct: 180 TEPDLAVITNIGTAHIGRLGSREAIAAAKCEITAGLHPQGTVVIPAGD 227


>gi|15643003|ref|NP_228045.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga maritima MSB8]
 gi|6919931|sp|Q9WY73|MURC_THEMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4980729|gb|AAD35322.1|AE001707_9 UDP-N-acetylmuramate--alanine ligase [Thermotoga maritima MSB8]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 279 LKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           L+   A   +Q+  +   GK + +    +PG   V NAL    L  ++G D A VLE LE
Sbjct: 233 LEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALE 292

Query: 338 KLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTI-TSGRIIVVFG----C 390
           +   V  RF  +  +     IYV  DYAHT + +  +L+  + +  + +I+V+F      
Sbjct: 293 EFRGVHRRFS-IAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYS 351

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD 417
             +R+ G      K AL LAD  +VT+
Sbjct: 352 RLEREDGN---FAK-ALQLADEVVVTE 374


>gi|319764374|ref|YP_004128311.1| udp-n-acetylmuramoylalanine/d-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|330826593|ref|YP_004389896.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
 gi|317118935|gb|ADV01424.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|329311965|gb|AEB86380.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
          Length = 593

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 36/160 (22%)

Query: 90  TPILVVDNTRKF-----LSLFASRLY------GKHPENILAVTGTSGKSSVASFVQQICQ 138
            P+++  + R+      LSL++  L+      G  P  +LA+TGT+GK++V S    +  
Sbjct: 173 APVVIAASARQIIVGGELSLYSEALHELRTRHGYAPA-VLAITGTNGKTTVTSLTGLLVD 231

Query: 139 RSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGL 194
            +G S   +  IGPT                   L      L +  +  V V E SS  L
Sbjct: 232 CAGKSVAVAGNIGPT------------------LLDTLGERLDAGQLPEVWVLELSSFQL 273

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           D  +  G +  A +  N+ +DH+D+H + QAY  AK R+F
Sbjct: 274 DGAQ--GFEPTAATVLNVTQDHLDWHGSMQAYAQAKARIF 311


>gi|255264765|ref|ZP_05344107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
 gi|255107100|gb|EET49774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 111/281 (39%), Gaps = 44/281 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+ ++ +  I    G       PT    +  +      P+          
Sbjct: 122 VVAVTGSNGKSTTSALIHHILTEVGR------PTQLAGNIGRGVLDIDPA---------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + V    +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 166 IDGEVVV---LELSSYQTDLAR--SLTPDIAVFTNLSPDHLDRHAGMGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGK--------FIHLKKVCAIH 286
             P+   A+I  D+   + +  +  +     R++ +    K        F     +    
Sbjct: 221 GGPER--AVIGVDEVEGQYLSNQMMDGMDPSRIIQISVDRKLQGPGWNIFARKGFLSEYR 278

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N +Q   S++ +D   +  LPG     NA  A   C ++G+   ++ + L     +P R 
Sbjct: 279 NGRQAG-SIDLRD---IIGLPGAHNHQNACAAYAACRSLGLAPKVIEQALHSFGGLPHRS 334

Query: 347 EFVGTNSRGGRIYVDYAHTSN-----SLEMILKNIRTITSG 382
           + +      G  YV+ +  +N           KNIR I  G
Sbjct: 335 QQIADQD--GVRYVNDSKATNVDSAAKALAAFKNIRWICGG 373


>gi|241205559|ref|YP_002976655.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859449|gb|ACS57116.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 470

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G  +   G   T         LT   P    KA  Y 
Sbjct: 117 IAITGTNGKSTTTALIAHILKSAGYDTQLGGNIGTAV-------LTLDPP----KAERYY 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 166 V--------VECSSYQIDLAPT--LDPSAGILLNLTPDHLDRHGTMQHYADVK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     AI+  DD++S  +  R   AG +V+ +
Sbjct: 212 VAGSDVAIVGIDDSHSALIADRVERAGVKVVRI 244


>gi|78046387|ref|YP_362562.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|109892756|sp|Q3BXF1|MURC_XANC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78034817|emb|CAJ22462.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 477

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 125/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T S G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTSSGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|332363454|gb|EGJ41237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK355]
          Length = 454

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 151/383 (39%), Gaps = 64/383 (16%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-----AEAIVVSSAYS 78
           Q+    +     DSR I++G +FV + G + DGH FI  A AQG     +E  V   AY 
Sbjct: 20  QFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEGAY- 77

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                         ++VD+        A     K   ++LAVTG++GK++    + Q+  
Sbjct: 78  --------------ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            S       G  + +IG   T+    +D                 +   G  H+      
Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD 
Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD- 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +++     A C+++  G     I L ++     K  ++      +     P+ G++
Sbjct: 221 ----KIVNEFLPADCKLVRFGPDTD-IFLTRLE--ERKDSLSFGCNFLEQRIDLPVTGKY 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA++AA   +  G+    + +   +L +   R E+    + G  I  D Y     ++
Sbjct: 274 NATNAMIAAYAALQEGVSETAIAQAFSELELTRNRTEWKKA-ANGADILSDVYNANPTAM 332

Query: 370 EMILKNIRTI---TSGRIIVVFG 389
            +IL+   TI   + GR + V  
Sbjct: 333 RLILETFSTIPANSGGRKLAVLA 355


>gi|325261331|ref|ZP_08128069.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
 gi|324032785|gb|EGB94062.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
          Length = 458

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 118/302 (39%), Gaps = 38/302 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138
           ++A I  + P L+    RK   L  + L G   K+ +N +AV+GT GK++  S +  I  
Sbjct: 75  YTAAISRDNPELIEAVARKIPMLTRAELLGQLMKNYKNPIAVSGTHGKTTTTSMISHILL 134

Query: 139 RSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              L      PT ++    Q    N     S  ++ +A  Y +S                
Sbjct: 135 EGNLD-----PTISVGGILQAIGGNIRVGNSETFITEACEYTNS---------------- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              LD    I+    N+  DH+D+ +  +         F  LLP +   +I ++    +E
Sbjct: 174 --FLDFYPRIS-VILNIEEDHLDFFKDLED-IRHSFHQFASLLPPDGTLVINSNIQNYEE 229

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQV 312
           +        C +++ G   K  +  +  +  +K  V+  +  K       +  + G+  V
Sbjct: 230 ICS---GLNCGIITYGSSPKSDYSAQNISYDDKGCVSFDLLRKGIPAEHVVLSVTGDHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL +  +   + I S ++ + L        RFE+ GT   G  I  DYAH    +   
Sbjct: 287 SNALASIAVAELLDIPSDMIQKGLISFSGTDRRFEYKGT-LNGTTIVDDYAHHPTEIAAT 345

Query: 373 LK 374
           LK
Sbjct: 346 LK 347


>gi|260587768|ref|ZP_05853681.1| tetrahydrofolate synthase [Blautia hansenii DSM 20583]
 gi|331083771|ref|ZP_08332880.1| hypothetical protein HMPREF0992_01804 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542033|gb|EEX22602.1| tetrahydrofolate synthase [Blautia hansenii DSM 20583]
 gi|330403196|gb|EGG82756.1| hypothetical protein HMPREF0992_01804 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 432

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 306 LPGEFQVYNALVAAGLC-----IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           L GEFQ+ N  +A         + + + +  V   +++   V GRF  +  N     + +
Sbjct: 251 LAGEFQIQNGALALEAVNQLRKLGLSLPNEAVYAGMKEAKWV-GRFTVMSQNPL---VIL 306

Query: 361 DYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLAD--IAIVTD 417
           D AH   + E + K++     G+ +  VFG   D+D  K   + ++   LA+  I + T 
Sbjct: 307 DGAHNPQAAEALRKSLELYFKGKKLYYVFGVFQDKDYKK---IIELTAPLAEHIITVETP 363

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAG 466
           DNPR+   E+++ + +  I   +E G  IE AI   +  +  +DVLVV G
Sbjct: 364 DNPRALPAEELKKQ-VEKINASVETGESIEAAIEKNLSYMGAEDVLVVFG 412


>gi|23014458|ref|ZP_00054273.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 24/158 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAVTGT+GKS+  + +  +    GL              A    L T        AL  
Sbjct: 112 MLAVTGTNGKSTTTTLLAHVLAECGLP------------VAAGGNLGT-------AALDL 152

Query: 177 LSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               G     +E SS+ L+  H L   KL A    N+  DH+  H     Y  AK R+F+
Sbjct: 153 PELPGDGRYVLELSSYQLELTHSL---KLGAAILLNITPDHLGRHGGMNGYIAAKRRVFD 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            L P  + A+I  DD   + +       G RV+ +  +
Sbjct: 210 FLTPGGA-AVIGVDDGPCRAIAAELERRGLRVVKISVE 246


>gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
 gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
          Length = 831

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 158/375 (42%), Gaps = 42/375 (11%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +E  I  + +DSR +      +F A+   + DGH +IP+   +G +  VV+      +  
Sbjct: 20  KETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRGVKNFVVT------EVP 73

Query: 84  ATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           A   S+ P    L V NT + L   A R   +    ++ +TG++GK+ V  ++ Q     
Sbjct: 74  ANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSNGKTMVKEWLYQ----- 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            L S Q+  T +  S+  ++++  P  ++L   ++  +  GV    +      L     D
Sbjct: 129 -LLSPQMCVTRSPRSY--NSQIGVPLSVWL---MNEQTEVGVFEAGISQPGEMLALR--D 180

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKR 259
            I+      TN+G  H    +++      K+ LF      ++  ++Y ADD   + V+ +
Sbjct: 181 IIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLFH-----DARTVVYNADDELVERVLAQ 235

Query: 260 AHN---AGCRVLSVGYQGKFIHLKK-VCAIHNKQQVT----ISVEGKDFDFLFPLPGEFQ 311
             +    G     +G+  +  H    V +I  K+  T    I   G++  +  P   +  
Sbjct: 236 MESTLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEENWYSIPFIDDAS 295

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           + N+++ A + + IGI    +   ++ +  V  R E V     G  +  D Y    NSL+
Sbjct: 296 ICNSIICAIVALRIGIAPDELDRRMQGIEQVAMRLE-VKEGQHGCTLINDSYNSDINSLD 354

Query: 371 MILK--NIRTITSGR 383
           + L   N R    GR
Sbjct: 355 IALDFMNRRPDHKGR 369


>gi|258404872|ref|YP_003197614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797099|gb|ACV68036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 444

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 102/268 (38%), Gaps = 59/268 (22%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E I+AVTG++GK++  + +  I + +G   F  G             L TP   Y+    
Sbjct: 113 EPIVAVTGSAGKTTTTTLIAHILETAGRRVFSGG------------NLGTPLSEYV---- 156

Query: 175 SYLSSQGVTHVSVEASS----HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             L+      + +E SS    H    H    + L      N+  +H+DYH+  +AY  AK
Sbjct: 157 --LAQDQADVLVLEVSSFQLVHASSFHPKVAVLL------NVAPNHLDYHEEMEAYVLAK 208

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           ++LF +  P +     YA     KE ++  H              F    +V  + N + 
Sbjct: 209 LKLFAKQQPGDLAIAPYA----LKEDLESRH--------------FSAADRVYFVPNDR- 249

Query: 291 VTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                      F  P LPGE    N   A   C  +G+D   V E L        R + V
Sbjct: 250 -----------FSCPQLPGEHNQANIEAAYLACRYLGVDEQAVAEALASYQPQAHRLQIV 298

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           GT +    +    A T  SL+  L++  
Sbjct: 299 GTWNGVKVVDDSKATTIESLQAALRSFE 326


>gi|332981585|ref|YP_004463026.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
 gi|332699263|gb|AEE96204.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
          Length = 469

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 9/182 (4%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ RDH+DY +     +NA +  F +L P +   +   DD   ++++    +   + +S 
Sbjct: 187 NIERDHLDYFKDLDDIYNAFLS-FAKLTPDDGYVVGCIDDPLVEQLLSDMPD---KAISY 242

Query: 271 GYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIG 326
           G   K  H        +K+      I  +G +   F   +PG   +YNAL +  +    G
Sbjct: 243 GID-KPAHWTADDIAFDKKGFPSFNIYCDGLNMGRFSLSIPGRHNIYNALASVAVADLCG 301

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ID  ++ E L        RFE  G    G  +  DYAH    ++  ++         I  
Sbjct: 302 IDIEMIKESLRLYKGAHRRFEVKGRLEEGVTVIDDYAHHPTEIKATIQAALNYPHNHIWC 361

Query: 387 VF 388
           VF
Sbjct: 362 VF 363


>gi|229496695|ref|ZP_04390409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316592|gb|EEN82511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 452

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 47/259 (18%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT--STISSFAQDNRL 162
           FASR Y      + A+TG++GK++  ++V  I + +G  +   G    S     A+D   
Sbjct: 95  FASR-YLPEDTKVAAITGSNGKTTTVNWVTHILKTAGYDAAMCGNVGFSMARLVAED--- 150

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT---NLGRDHID- 218
             P   Y+                VE SS      +LDG      + +   N+  DH+D 
Sbjct: 151 --PHKYYV----------------VEMSSF-----QLDGTYKFHPNVSVLLNITPDHLDR 187

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y    + Y  +KMR+ ++L   +S  + + +DA+ K+ +++ H+  C +L    Q     
Sbjct: 188 YKHKFELYALSKMRITQQLGKGDS-FVYWEEDAFIKKYLEQ-HSMECTLLPFSLQ----- 240

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLP-------GEFQVYNALVAAGLCIAIGIDSAL 331
                A++   + T+ +E +     F +P       G+  + NA+ +A +    G+ +  
Sbjct: 241 TSGAKALYESDKETLHIEAQHNLSAFSIPKRDLALVGKHNLLNAMASALVAREFGVSNEY 300

Query: 332 VLEHLEKLHVVPGRFEFVG 350
           + + L     VP R E+V 
Sbjct: 301 LGKALRDFKNVPHRIEYVA 319


>gi|85707193|ref|ZP_01038279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
 gi|85668247|gb|EAQ23122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
          Length = 465

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 119/301 (39%), Gaps = 63/301 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+ ++ +  +         + G T+ ++       L    P         
Sbjct: 122 VIAVTGSNGKSTTSALIHHVL-------VEAGRTAQLAGNIGRGVLDIDPP--------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               GV  V +E SS+  D  R   +      FTN   DH+D H     YF AK RLF E
Sbjct: 166 -EDGGV--VVLELSSYQTDLAR--ALTPDVAVFTNFSPDHLDRHAGLGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADDA---YSKEVMKRAHN---------------AGCRVLS-VGYQGKFI 277
             P    A+I  D+    Y    M    N               +G  V +  G+  ++ 
Sbjct: 221 GGPDR--AVIGVDEPEGQYLAGQMAEGPNDDRVIRISVDHKLTGSGWSVFARKGFLSEYR 278

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           H ++V +I             D   +  LPG     NA  A   C  +G+   ++   L 
Sbjct: 279 HGRQVGSI-------------DLRGVKGLPGSHNHQNACAAYAACRTLGLAPRVIEAGLH 325

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQ 396
               +P R + V    + G I+V+ +  +N ++  LK ++   + R I    CGG ++D 
Sbjct: 326 SYAGLPHRSQRVA--EKDGIIFVNDSKATN-VDSALKALQAFENIRWI----CGGLEKDG 378

Query: 397 G 397
           G
Sbjct: 379 G 379


>gi|289662111|ref|ZP_06483692.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 452

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 134/345 (38%), Gaps = 53/345 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           + P  I+  A  +VV +A S        R N  +  V+D  R++ S    L    L G+ 
Sbjct: 54  YAPSNISPDAIDVVVGNALS--------RGNPAVEAVLDAGRRYTSGAQWLAEQVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + LAV GT GK++  + +  + + +G +     P   I   A+D              
Sbjct: 105 --DTLAVAGTHGKTTTTTILSYLLEAAGRA-----PGFLIGGVAEDF------------G 145

Query: 174 LSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +S    QG   V VEA  +       + +    + +     NL  DH D      A    
Sbjct: 146 VSARLGQGCEFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAI--- 201

Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCA 284
             R F  L+   P     I+  +DA+  EV+      GC   V   G+        ++ A
Sbjct: 202 -QRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTPVERFGFDVSLDWSARLIA 256

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   +    +     +PL G   V N L A     A+G+D A V+  L +   V  
Sbjct: 257 ADGSAFAVLHRGVEIGQVQWPLVGRHNVLNGLAALAAAHAVGVDPATVMPALARFQSVKR 316

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           R E +G N+ G  +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 317 RLEVIG-NAHGVTVYDDFAHHPTAIATTLQGLRAKVGAARVVVAM 360


>gi|256379769|ref|YP_003103429.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
 gi|255924072|gb|ACU39583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
          Length = 490

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 149/381 (39%), Gaps = 65/381 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLF-------------------IPQAIAQG-AEAIV 72
           V  D+R +  G +F+A+ G + DGH F                    P  IA   A A  
Sbjct: 30  VEFDTRKLLPGGLFLALPGERVDGHDFAAAAVAAGAAGVLAGREVPAPSVIAPPVAPADE 89

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
              AY L   S      +   V+    K       RL       ++ VTG+SGK+S    
Sbjct: 90  HEGAYVLSGDS----DGSGAAVLAALGKLARHVTDRLTAGG-LTVVGVTGSSGKTSTKDL 144

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q+   +G +   I P  +      +N L  P + +   +   YL    V  +S     
Sbjct: 145 IAQVLSPTGAT---IAPPGSF-----NNELGHPWTALRADEDTGYL----VLELSARGPG 192

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H  D   +   ++  G+  N+G  H+    +++     K  L E  LP++  A++ ADD 
Sbjct: 193 HIADLCAVAPPRI--GAVLNVGTAHLGEFGSREGVARTKGELVEA-LPEDGVAVLNADDP 249

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------ 305
               V+  A     +V+ VG   +   ++ V  + ++Q          F  L P      
Sbjct: 250 L---VLAMAERTKAKVVLVGEHSRA-QVRAVDIVLDEQAR------PGFTLLTPHGSARV 299

Query: 306 ---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG-RFEFVGTNSRGGRIYVD 361
              + G  QV NAL AA + + +G     V + L     +   R E V  +   G   V+
Sbjct: 300 QLAVHGPHQVGNALTAAAVALELGATPQQVADRLGSAKPISAHRMEVV--DRADGVTVVN 357

Query: 362 YAHTSN--SLEMILKNIRTIT 380
            A+ +N  S++  LK++ TI+
Sbjct: 358 DAYNANPESVKAALKSLATIS 378


>gi|254465031|ref|ZP_05078442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
 gi|206685939|gb|EDZ46421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
          Length = 463

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 45/315 (14%)

Query: 101 FLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           F   FA   +  H  P  ++AVTG++GKS+  + +  I Q +G  S   G          
Sbjct: 104 FFRSFADADWQMHDQPPRVVAVTGSNGKSTTVALLHHILQEAGRESQLAG---------- 153

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                      + + +  +   G   V V E SS+  +  R   +      FTNL  DH+
Sbjct: 154 ----------NIGRGVLDIDPPGEGGVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHL 201

Query: 218 DYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS------V 270
           D H     YF AK RLF E      S A       + +  ++RA +   RV++       
Sbjct: 202 DRHGGMGGYFAAKRRLFAEADRTAPSSASTRTRGCFWRPAVRRASDD--RVIASRARKLT 259

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G   +    K   + + K +   S+   D   +  LPG     NA  A      +G+   
Sbjct: 260 GPGWQVFARKGFLSEYRKGRQAASI---DLREMTGLPGAHNHQNACAAYAAARTLGLAPR 316

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           ++ + +     +P R + +   +  G  YV+ +  +N L+  +K +    + R I    C
Sbjct: 317 VIGDAMATFPGLPHRSQTIAEAA--GVRYVNDSKATN-LDSAVKALSAFKNIRWI----C 369

Query: 391 GG-DRDQGKRPIMGK 404
           GG ++D G   + G+
Sbjct: 370 GGLEKDGGLEALKGQ 384


>gi|328952329|ref|YP_004369663.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452653|gb|AEB08482.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 477

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 156/438 (35%), Gaps = 97/438 (22%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +E +V+SSA  L +          + ++   +    L A +         +A+ G  GK+
Sbjct: 65  SEVVVISSAIGLDNPELKAAQARGLQILSRAQMLAMLMAGK-------TQIAIAGAHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV-- 182
           +  S    + ++ GL+     P+  I         N +  P   ++A+A     S  V  
Sbjct: 118 TTTSMTASVLRQGGLA-----PSVVIGGIVDSLGGNAVLGPGDYFVAEADESDGSFLVFN 172

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            HV+V                      TN+ R+H+D+++          +   ++ P  +
Sbjct: 173 PHVAV---------------------VTNVDREHLDHYRDLAHIQEVFAKFIHQVQPGGA 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFD 301
               Y D                R L  G QG+ I    K    +    + ++  G  + 
Sbjct: 212 VVACYDD-------------PNLRPLLYGVQGRLITYGLKSGGNYRAAHIQVTGGGSSYT 258

Query: 302 FL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            L           PL G   V N+L AA +  A+G+D   +   L +   +  RFE  G 
Sbjct: 259 LLRQEKKLGQITIPLAGWHYVANSLAAAAVGFALGLDFRDIQAGLAQTGRIKRRFEIKGE 318

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKI 405
           N +G  +  DY H    +   L  +    +GR +VV      F     R Q   P    I
Sbjct: 319 N-QGVTVIDDYGHHPTEIRATLDAMAQAFAGRRLVVAFQPHRF----SRTQALLPDFFDI 373

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIE---------- 454
               A +  +TD     E        +IHG+ G  + +G R EA  TA++          
Sbjct: 374 -FQQAQLLFLTDIYSAGE-------RVIHGLSGRDLYRGIR-EAGHTAVQYVGNREELAP 424

Query: 455 ----MLNKQDVLVVAGKG 468
                L + DVLV  G G
Sbjct: 425 ELWNYLRRGDVLVTMGAG 442


>gi|327194624|gb|EGE61474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CNPAF512]
          Length = 470

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G  + Q+G     +    D     P P          
Sbjct: 117 IAITGTNGKSTTTALIAHILKSAGYDT-QLGGNIGTAVLTLD----PPKP---------- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +  VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 162 ----ERYYVVECSSYQIDLAPT--LNPSAGILLNLTPDHLDRHGTMQHYADVK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     A++  DD++S  +  R   AG +V+ +
Sbjct: 212 VAGSDVAVVGIDDSHSALIADRIQRAGVKVVRI 244


>gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
 gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
          Length = 831

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 158/375 (42%), Gaps = 42/375 (11%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +E  I  + +DSR +      +F A+   + DGH +IP+   +G +  VV+      +  
Sbjct: 20  KETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRGVKNFVVT------EVP 73

Query: 84  ATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           A   S+ P    L V NT + L   A R   +    ++ +TG++GK+ V  ++ Q     
Sbjct: 74  ANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSNGKTMVKEWLYQ----- 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            L S Q+  T +  S+  ++++  P  ++L   ++  +  GV    +      L     D
Sbjct: 129 -LLSPQMCVTRSPRSY--NSQIGVPLSVWL---MNEQTEVGVFEAGISQPGEMLALR--D 180

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKR 259
            I+      TN+G  H    +++      K+ LF      ++  ++Y ADD   + V+ +
Sbjct: 181 IIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLFH-----DARTVVYNADDELVERVLAQ 235

Query: 260 AHN---AGCRVLSVGYQGKFIHLKK-VCAIHNKQQVT----ISVEGKDFDFLFPLPGEFQ 311
             +    G     +G+  +  H    V +I  K+  T    I   G++  +  P   +  
Sbjct: 236 MESTLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEENWYSIPFIDDAS 295

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           + N+++ A + + IGI    +   ++ +  V  R E V     G  +  D Y    NSL+
Sbjct: 296 ICNSIICAIVALRIGIAPDELDRRMQGIEQVAMRLE-VKEGQHGCTLINDSYNSDINSLD 354

Query: 371 MILK--NIRTITSGR 383
           + L   N R    GR
Sbjct: 355 IALDFMNRRPDHKGR 369


>gi|259650801|dbj|BAI42963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 463

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 48/370 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR ++ G +FV + G + DGH FIP A A GA A  V+  +        + +  P 
Sbjct: 30  VAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAAGAVATFVAEDH------LPMTTKLPT 82

Query: 93  LVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           LVV +    +   A   L  K    ++A+TG++GK++       I       + Q     
Sbjct: 83  LVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVK 136

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA---- 206
           T  ++  +N +  P        ++ LS +  T V V     G+D+  +L  +  +A    
Sbjct: 137 TPDNY--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSSLAEPDV 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEVMKRAH 261
              T +G  HI++ +T+    +AKM + + L  KE    I+  D     + +K+V +   
Sbjct: 185 AVITMIGEAHIEFFKTRAKIADAKMEITDGL--KEDGTFIFNGDEPLLVSRAKQVTQSQE 242

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G    +      F H   +    N  + T+  +  +  F  P+ GE+ V NAL A  +
Sbjct: 243 TFGLHPENT----LFAH--SISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
                +    + + L    V   R +++     G +I  D Y     +++ ++ +     
Sbjct: 296 GRRFHVKPEAMQKALVHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFQ 354

Query: 380 TSGRIIVVFG 389
           T+GR I V G
Sbjct: 355 TAGRHIAVLG 364


>gi|157964491|ref|YP_001499315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           massiliae MTU5]
 gi|157844267|gb|ABV84768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           massiliae MTU5]
          Length = 498

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 38/147 (25%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I   SGL     G                             
Sbjct: 107 IAITGTNGKSTTTALISHILNSSGLDYPVAGNI--------------------------- 139

Query: 178 SSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAK 230
              GV+ +  +AS  G    L   +LD +K          N+  DH+D HQ    Y  AK
Sbjct: 140 ---GVSALQAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMTCYIAAK 196

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVM 257
            ++F+  + +ES A+I  D+ Y +EV 
Sbjct: 197 SKIFDR-MDQESYAVINIDNDYCREVF 222


>gi|91791720|ref|YP_561371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
 gi|91713722|gb|ABE53648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
          Length = 440

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 31/163 (19%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  K P  ++ +TG++GK++V + V ++   +GL              A    
Sbjct: 97  VELFARAIADKKP-CVIGITGSNGKTTVTTLVYEMLLAAGLK------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           + TP+   LA  + Y          +E SS  L+      +  IA +  N+  DH+D + 
Sbjct: 144 IGTPALDLLAMDVDYYV--------LELSSFQLETTY--SLNCIAATCLNISEDHMDRYS 193

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAH 261
              AY NAK+RL++     +S  I+Y  D    Y  E M + H
Sbjct: 194 DLTAYRNAKLRLYD-----QSRFIMYNLDDELTYPHEPMNQNH 231


>gi|322436296|ref|YP_004218508.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
 gi|321164023|gb|ADW69728.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
          Length = 463

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 126/329 (38%), Gaps = 46/329 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           ++ +V SSA S +D    + +    + V    + L+      YG      +AV G  GK+
Sbjct: 72  SDVVVTSSAVS-KDNPEVLEARARKIPVIQRAEMLAELMRLKYG------IAVAGMHGKT 124

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S +  +    GL  +  +G    + +   + RL T           YL ++      
Sbjct: 125 TTTSMIAAVLAGGGLDPTVVVG--GRVDALGSNARLGTSQ---------YLVAEA----- 168

Query: 187 VEASSHGLDQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                   D+     +KL  I    TNL R+H D + T     +A    F + LP     
Sbjct: 169 --------DESDRSFLKLSPILAVVTNLDREHTDCYPTMDD-VDAAFLQFMDALPFYGAT 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDF-- 300
               D+   + ++ R      +V + G  +   F  L+ +  +   +  T  V  +    
Sbjct: 220 TACIDNERLRGILPRVRR---KVYTYGESHDADF-RLEMLPGVDGVRS-TFEVNYRGLLL 274

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   +PG   V NA  A  + + +GID A + + L     V  RF+  GT   G  + 
Sbjct: 275 GPFELHVPGRHNVLNATAAIAVGVQLGIDPASIAKGLATFRGVDRRFQLKGTVG-GIAVV 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            DY H    +   LK  R    GR++VVF
Sbjct: 334 DDYGHHPTEITATLKAARDCGYGRVLVVF 362


>gi|163738713|ref|ZP_02146127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388041|gb|EDQ12396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
          Length = 465

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 124/298 (41%), Gaps = 43/298 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+AVTG++GKS+  + +  I Q +G  S   G    I     D  +  P           
Sbjct: 122 IVAVTGSNGKSTTVALLHHILQEAGRESQLAG---NIGRGVLD--IDPPG---------- 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S G+  V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 167 --SGGI--VVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHL-------KKVCAIHN 287
             P    AII  D+     +  +   A    RV+ +    K   L       K   + + 
Sbjct: 221 GGPDR--AIIGVDEDEGLYLAGQLSEAASDDRVIRISASQKLTGLGWQVFARKGFLSEYR 278

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +   S+   D   +  LPG     NA  A     A+G+   L+ + L     +P R +
Sbjct: 279 KGRQAASI---DLRQMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRSQ 335

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGK 404
            + T++  G  YV+ +  +N L+  +K +    + R I    CGG ++D G   + G+
Sbjct: 336 TIATHA--GVRYVNDSKATN-LDSAVKALSAFDNIRWI----CGGLEKDGGLEALRGQ 386


>gi|94309649|ref|YP_582859.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
 gi|93353501|gb|ABF07590.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
          Length = 883

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 144/375 (38%), Gaps = 31/375 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TGT+GK+ VA  V ++ Q SG  +             Q  +               
Sbjct: 488 VVGITGTNGKTVVAKLVARLLQLSGKHTGLACSDGLFLDRRQVEKGGRGDRASWDAGHRI 547

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI-DYHQTQQAYFNAKMRLF 234
           L ++ V     E  S  +    L   +   G  TN G+ DHI D++   +      +R  
Sbjct: 548 LMNRAVEAAVFENDSGMILSQGLPYDRCQVGVVTNFGKPDHIGDFYVEDEDRMYNVLRTQ 607

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHN------------AGCRVLSVGYQGKFIHLKKV 282
            +++ K   A+I A DA   E+ +                A     + G +  F+   KV
Sbjct: 608 VDVVLKTGVAVINAADARLVEMAELCDGDVIFFGLSADLPAIATHRAAGKRAVFVRDGKV 667

Query: 283 C-AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             A  N +     V      +   +   FQ+ N L A     A+GI + L+   +    V
Sbjct: 668 VLATGNSETALTDVSAIPLTYAGRVA--FQIENVLAAVATGWALGISNDLIRAGIVTFDV 725

Query: 342 ----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               VPGRF        G  + VD AH + +LE +   +    S R ++VFG G  R   
Sbjct: 726 GQVDVPGRFTLF--EHHGATVVVDDAHNAPALEALAAALDRFPSERRMLVFGAGVQRRDE 783

Query: 398 KRPIMGK-IALDLADIAIVTDDNPRSEDPE-KIRAEIIHG------IPGFIEKGNRIEAI 449
                GK I      + +  D + + E PE + RA +  G      +   I++G R  A+
Sbjct: 784 DLIEQGKVIGATFDRVFLCEDQSVKRELPETEARALLKKGLYEGRRVTKIIDEGARRAAV 843

Query: 450 RTAIEMLNKQDVLVV 464
             A+  L   D+LV+
Sbjct: 844 EAALAQLVAGDLLVL 858


>gi|34580522|ref|ZP_00142002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           sibirica 246]
 gi|28261907|gb|EAA25411.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           sibirica 246]
          Length = 500

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 38/147 (25%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I   SGL     G                             
Sbjct: 107 IAITGTNGKSTTTALISHILNSSGLDYPVAGNI--------------------------- 139

Query: 178 SSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAK 230
              GV+ +  +AS  G    L   +LD +K          N+  DH+D HQ    Y  AK
Sbjct: 140 ---GVSALQAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMTCYIAAK 196

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVM 257
            ++F+  + +ES A+I  D+ Y +EV 
Sbjct: 197 SKIFDR-MDQESYAVINIDNDYCREVF 222


>gi|253582839|ref|ZP_04860058.1| folylpolyglutamate synthase [Fusobacterium varium ATCC 27725]
 gi|251835273|gb|EES63815.1| folylpolyglutamate synthase [Fusobacterium varium ATCC 27725]
          Length = 413

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 164/390 (42%), Gaps = 62/390 (15%)

Query: 113 HPEN---ILAVTGTSGKSSVASFVQQICQRSG------------------------LSSF 145
           +P+N   I+ + GT+GK S A+ ++ I   +G                        +S  
Sbjct: 36  NPQNSYKIIHIAGTNGKGSTATTLETILLEAGYSVGKYTSPHILKFNERIRADGKDISDE 95

Query: 146 QIGPTSTISSFAQDNRLTTPS--PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            I     +   A +N+   P+   +  A    Y   + V +V +E    G    R D   
Sbjct: 96  DIAYYYEMVKKAIENKKVKPTFFEVTTAMMFKYFQDKKVDYVVLETGMGG----RFDATN 151

Query: 204 LIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           +        TN+  DH +Y      Y  A+ +     + K+ P +I AD+  + E +K  
Sbjct: 152 ITKADLCIITNVTLDHTEY-LGDTIYKIAREKAG---IIKDCPKVIVADN--NSEFLKAI 205

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +    +V++V  + K+   K    +  +  VT I ++G  F+F   L G++Q  N L A 
Sbjct: 206 NEEKAKVINVLEKYKYAEEK----LDFENFVTEIKIDGDIFEF--SLFGDYQFKNFLCAY 259

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RT 378
              + +GI   ++ +  +K+ +   RFE    N     + +D AH  + +  + K I + 
Sbjct: 260 EAALELGISKEIIKKASKKV-IWQCRFERYSNNP---LVVLDGAHNPDGMTELKKIIEKG 315

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGI 436
                ++ +     D+D      M KI   ++   I+T   +NPR    E+I  + +  I
Sbjct: 316 YKPEEVVAIVSILKDKDIKS---MLKILKSISSTLILTSLAENPRGTSGEEIYRQ-LSNI 371

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            G   + + ++A + A++M  K+ ++++ G
Sbjct: 372 DGCSIENDLMKAYKKALDM--KKKIILICG 399


>gi|28897235|ref|NP_796840.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28805444|dbj|BAC58724.1| UDP-N-acetylmuramate-alanine ligase [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 490

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 130 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 186

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 187 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 238

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   ++DDA  +  ++  H         G QGKF  ++K  A 
Sbjct: 239 IDDPVIRELIPRISRQVITYGFSDDADVR--IENYHQE-------GQQGKFTVVRKGRA- 288

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        + D    +PG     NA  A  +     I+   +L+ +        R
Sbjct: 289 -------------NLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRR 335

Query: 346 FEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G     +  DY H    +++ +K  R+     R++++F
Sbjct: 336 FDHLGEFDTGNGHAMLVDDYGHHPTEVDVTIKAARSGWQDKRLVMIF 382


>gi|304321492|ref|YP_003855135.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
 gi|303300394|gb|ADM09993.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
          Length = 478

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 158/373 (42%), Gaps = 31/373 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER +  +S D+R +  G +F+A+ G + DGH F   A  +GA A +++  +   D S  +
Sbjct: 31  ERPVYGLSFDTRSLAKGDLFIALSGAR-DGHDFAQAAADKGAAAALLT--HRPADLSEAL 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L+VD+  + L   A     +    ++AVTG+ GK++    +     R+ LS   
Sbjct: 88  ----PGLMVDDPLRALEDLARAARQRCFGALVAVTGSVGKTTTKEML-----RAALS--- 135

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             P   + + A+        PI LA +L   ++ GV  + +  +  G     +D ++   
Sbjct: 136 --PLGEVHAAAKSFNNHIGVPISLA-SLPQQAAFGVFEIGMNHA--GEITPLVDLVRPHV 190

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC- 265
              T++   H++   +     +AK  +   +  +   A++ +D+ Y + ++ RA   G  
Sbjct: 191 AIITSVAAVHLENFSSVDGIADAKAEILSGIR-RGGAAVLPSDNPYYERLVSRARECGVE 249

Query: 266 RVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           R++  G+       I       I    +  I++ G+       +PG  QV NAL      
Sbjct: 250 RIVPFGFGDGARPGIWGTAPVMIEGGSRTEIAIAGERHVLELGVPGTHQVSNALAVIAAG 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMI-----LKNI 376
            A+G+D   ++E L       GR        RG ++ V D ++ +N   M      L   
Sbjct: 310 AALGLDLESMIEGLASFRAGAGRGARHHVTIRGKKVLVLDESYNANPTSMASALAQLGET 369

Query: 377 RTITSGRIIVVFG 389
             +  GR + V G
Sbjct: 370 EPVAGGRRLAVLG 382


>gi|332160410|ref|YP_004296987.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607129|emb|CBY28627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664640|gb|ADZ41284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859323|emb|CBX69670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica W22703]
          Length = 444

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 102/238 (42%), Gaps = 36/238 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ + +G   +Q+G    I   A          + L K LS 
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGVPA----------LNLLKQLS- 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L       V +E SS  L+      ++  A +  N+  DH D Y    Q Y  AK+R++E
Sbjct: 153 LQKHENQLVVLELSSFQLET--TSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRIYE 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  V      A  R +S G      HL       NKQQ  I +
Sbjct: 211 ----NAKVCVVNADDALTMPV----RGADNRCISFGVDVGDYHL-------NKQQGEIWL 255

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +    L      L G     NAL A  L  A+GI  +  L+ L     +P RF+ V
Sbjct: 256 RVRGEKVLNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLV 313


>gi|121595963|ref|YP_987859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acidovorax
           sp. JS42]
 gi|120608043|gb|ABM43783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax sp.
           JS42]
          Length = 498

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 36/162 (22%)

Query: 90  TPILVVDNTRKF-----LSLFASRL------YGKHPENILAVTGTSGKSSVASF----VQ 134
            P+++    R+      L L+A  L       G  P  +LA+TGT+GK++V S     V+
Sbjct: 78  APVVIAARARQISVEGELGLYAQALRELRAGQGYAPA-VLAITGTNGKTTVTSLTGLLVE 136

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
              +R  ++   IGPT  + + AQ     T   +++                +E SS  L
Sbjct: 137 CADKRVAVAG-NIGPT-LLDTLAQHIDAGTLPEVWV----------------LELSSFQL 178

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           D   + G +  A +  N+ +DH+D+H + QAY  AK R+F E
Sbjct: 179 DG--VQGFEPTAAAVLNITQDHLDWHGSLQAYAQAKGRIFGE 218


>gi|116328899|ref|YP_798619.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116330494|ref|YP_800212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281748|sp|Q04UG6|MURD_LEPBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122283318|sp|Q04Z09|MURD_LEPBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116121643|gb|ABJ79686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124183|gb|ABJ75454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 114/287 (39%), Gaps = 38/287 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT GKS+  S V  + ++              S   +   L  P         + 
Sbjct: 104 IIGITGTDGKSTTTSLVAHLLKKD------------FSDLKEGGNLGIP--------FTS 143

Query: 177 LSSQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              + ++   +E SS+ L D   LD   L    F NL  DH++ H+T + YF AK+++ +
Sbjct: 144 FCKEPISLAVLELSSYQLEDSSPLD---LNVSVFLNLAPDHLERHETMENYFRAKLKIAD 200

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              P  S  +I ++    +E +  + +  C++LS G            AI ++    I  
Sbjct: 201 LQNPNHS--LIVSEKI--REKILNSTSVQCKLLSFG------RATTSEAILDESSSEIRT 250

Query: 296 EGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +D   F LPG     N   A     AIG     +   +     +P RF+  G   +
Sbjct: 251 SKFIYDISRFYLPGTHNRENLAAAILASEAIGGKPESIQAQIPFFMGLPHRFQIAG--EK 308

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            G  +++ + ++N   M+          R  ++ G G  + +  +P+
Sbjct: 309 RGISFINDSKSTNLHSMLAGMSAWKNLDRTCLILG-GRPKQEDPKPL 354


>gi|153839043|ref|ZP_01991710.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|260363428|ref|ZP_05776276.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
 gi|31076799|sp|Q87SG3|MURC_VIBPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149747471|gb|EDM58419.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|308114671|gb|EFO52211.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
          Length = 485

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   ++DDA  +  ++  H         G QGKF  ++K  A 
Sbjct: 234 IDDPVIRELIPRISRQVITYGFSDDADVR--IENYHQE-------GQQGKFTVVRKGRA- 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        + D    +PG     NA  A  +     I+   +L+ +        R
Sbjct: 284 -------------NLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRR 330

Query: 346 FEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G     +  DY H    +++ +K  R+     R++++F
Sbjct: 331 FDHLGEFDTGNGHAMLVDDYGHHPTEVDVTIKAARSGWQDKRLVMIF 377


>gi|182415336|ref|YP_001820402.1| FolC bifunctional protein [Opitutus terrae PB90-1]
 gi|177842550|gb|ACB76802.1| FolC bifunctional protein [Opitutus terrae PB90-1]
          Length = 440

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 174/446 (39%), Gaps = 111/446 (24%)

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
           N E G    P A A G EA+         ++   +++    L +D  R    L A+ L  
Sbjct: 6   NPESGRGAQPDA-AAGFEAVA--------EYLCGLKAGGSKLGLDRMR----LLAAEL-- 50

Query: 112 KHPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLT 163
            HPE  L    V GT+GK SVA+ ++ I + +G   +++G  ++     +    Q NR  
Sbjct: 51  GHPERALRCVHVAGTNGKGSVAAMLEAILRAAG---WRVGLFTSPHLVHVGERVQVNR-- 105

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-----------------HRLDGIKL-- 204
              P+  A+ + Y+    V    + A     D+                  R D   +  
Sbjct: 106 --QPLAPAEIVGYVRELDVLADRIAAREGPGDRPSFFEYMTAMALLQFGRQRCDIAVMEV 163

Query: 205 -IAGSF-------------TNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            + G F             T++G DH ++   T +    AK  + +     E P +I   
Sbjct: 164 GLGGEFDATNLVDPEMTVITSIGFDHCEWLGHTLEEIARAKAGIIK----PERPVVIGRV 219

Query: 250 DAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--- 305
              ++ V++ RA     RV+SV                        V G++   ++P   
Sbjct: 220 PPAAETVIRARAEEMEARVISV----------------------REVYGENL-AVYPETN 256

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-----PGRFEFVGTNSRGGRIYV 360
           L G++Q +NA  A     A  +DS   +      H +     PGR++ V    R  R+ +
Sbjct: 257 LAGDYQRWNAATAT--LAARELDSRWRISERAIAHGLWHVRWPGRWQRVLVGGR--RVIL 312

Query: 361 DYAHTSNS---LEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLADIAIVT 416
           D +H +     L+  L  +R  T    IVV G  G +R Q   P+M  I     ++ +V 
Sbjct: 313 DASHNAEGASVLDANLARLRAETGRAPIVVVGVLGAERAQ---PLMAAICRHAGEVHLVV 369

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + PR+   E++ A I  G PG + +
Sbjct: 370 PNQPRASSYEELAALIPAGFPGRVAR 395


>gi|84625260|ref|YP_452632.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188575298|ref|YP_001912227.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|109892757|sp|Q2NZB9|MURC_XANOM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892758|sp|Q5GW42|MURC_XANOR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620442|sp|B2SNZ4|MURC_XANOP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84369200|dbj|BAE70358.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188519750|gb|ACD57695.1| UDP-N-acetylmuramate--alanine ligase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 477

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 125/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IRDDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    +
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLS 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGRTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T S G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVAPGTIARALENFAGIGRRFNDLGEVTTSTGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|56964124|ref|YP_175855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
 gi|56910367|dbj|BAD64894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
          Length = 453

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 168/400 (42%), Gaps = 45/400 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R  + VS+D+R      +FV + G + DGH FI QAI  GA   +      + +    + 
Sbjct: 22  RGFSGVSTDTRQRMENGLFVPLKGERFDGHRFIEQAIEAGATGALWKEQEPVPE---QLP 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +  V++T K L   A     K    ++ +TG++GK++    V  +   +G ++   
Sbjct: 79  ETFQLYYVEDTLKALQALAQAYREKVNPFVIGITGSNGKTTTKDIVASVL--AGTAAVH- 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEAS-SHGLDQHRLDGI-KL 204
               T  +   +N +  P        L+ L+  +  T+  VE   +H  +   L  I K 
Sbjct: 136 ---KTKGNL--NNHIGVP--------LTLLAMPEDCTYAVVEMGMNHAGEISTLTQIAKP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A   T++G  HI++  +++    AKM + + L+ KES  +   D+       ++A    
Sbjct: 183 NAAIITSIGDAHIEHLGSREGIAAAKMEIADGLI-KESWLLFDGDEPLLSPYNEQAET-- 239

Query: 265 CRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               +VG+  +    +  V  + N       + G  +     + G+  V NA  A  L  
Sbjct: 240 ----TVGFSDQAATKISDVKTLENG--YVFYLNGARWQLT--MLGKHNVKNAAYAILLAQ 291

Query: 324 AIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT 380
            +G  +A++ + L  L +   R E   G N   G   ++ A+ +N  S++  ++ ++ + 
Sbjct: 292 KLGFSNAMIQKQLSSLAITGMRLEKLKGPN---GSTIINDAYNANPTSMKAAIETVKELP 348

Query: 381 --SGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               R++V   ++  G D +   + +   I   + D+  V
Sbjct: 349 HYKRRVLVLGDIYELGQDEEALHKSVATAIEPPITDVVTV 388


>gi|260495140|ref|ZP_05815268.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_33]
 gi|260197197|gb|EEW94716.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_33]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVL 268
           TN+  DH+D H       N K    + +   +  AII  D +     V K          
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIKFICHTQKEAIICMDCENLRDAVSKLPEGKTVTTY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+  +   I+ K +  +  K    + +  +   +F   +PGE  + N+L    L +  G+
Sbjct: 238 SIKDENANIYAKNIRIVDRKTIFELYINKELIGEFSLNIPGEHNILNSLPVIYLALKFGV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + E L        R++ +         G  ++  RI  DYAH    ++  LK I++
Sbjct: 298 SKGEIQETLHNFKGSKRRYDVLFDNDLENGYGNKTKRVRIIDDYAHHPTEIKATLKAIKS 357

Query: 379 ITSGRIIVVF 388
           I   R++V+F
Sbjct: 358 IDKSRLVVIF 367


>gi|258509534|ref|YP_003172285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
 gi|257149461|emb|CAR88434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 462

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 48/370 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR ++ G +FV + G + DGH FIP A A GA A  V+  +        + +  P 
Sbjct: 29  VAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAAGAVATFVAEDH------LPMTTKLPT 81

Query: 93  LVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           LVV +    +   A   L  K    ++A+TG++GK++       I       + Q     
Sbjct: 82  LVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVK 135

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA---- 206
           T  ++  +N +  P        ++ LS +  T V V     G+D+  +L  +  +A    
Sbjct: 136 TPDNY--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSSLAEPDV 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEVMKRAH 261
              T +G  HI++ +T+    +AKM + + L  KE    I+  D     + +K+V +   
Sbjct: 184 AVITMIGEAHIEFFKTRAKIADAKMEITDGL--KEDGTFIFNGDEPLLVSRAKQVTQSQE 241

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G    +      F H   +    N  + T+  +  +  F  P+ GE+ V NAL A  +
Sbjct: 242 TFGLHPENT----LFAH--SISGHRNHTEFTVE-QWPELTFSIPIMGEYNVVNALAALLV 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
                +    + + L    V   R +++     G +I  D Y     +++ ++ +     
Sbjct: 295 GRRFHVKPEAMQKALVHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFQ 353

Query: 380 TSGRIIVVFG 389
           T+GR I V G
Sbjct: 354 TAGRHIAVLG 363


>gi|326390852|ref|ZP_08212404.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993111|gb|EGD51551.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 464

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+DY +          R F  L+P +   +   DDA     M   +     +++ 
Sbjct: 184 NVDSDHLDYFKNIDN-IKQSFRQFANLVPPDGFVVACKDDA---NTMYVVNGLNKNIVTY 239

Query: 271 G------YQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G      ++ K I    K CAI +        E    +F   +PG+  VYNAL A  +  
Sbjct: 240 GIYQDSDWKAKNISFDDKGCAIFD----VYYKEEYMGNFKLSIPGKHNVYNALAALAVSH 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID      +L +      RFE  G    G  I  DYAH    ++  L+  +     R
Sbjct: 296 LVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDDYAHHPAEIKATLEAAKNYPHKR 354

Query: 384 IIVVF 388
           II +F
Sbjct: 355 IICIF 359


>gi|325268572|ref|ZP_08135202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
 gi|324989100|gb|EGC21053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
          Length = 504

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 86/421 (20%), Positives = 173/421 (41%), Gaps = 46/421 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   AG IF+A+ G   DG+ F   A+ +G    VV  A   +   A       I
Sbjct: 82  VTTDSRSCPAGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEAEYAKAGDARF-----I 136

Query: 93  LVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LV D   T K L+    R +G     ++ +TGT+GK++    +      S + S +    
Sbjct: 137 LVDDALVTYKELARAHRRRFGIP---VIGITGTNGKTTSKELI------SAVLSEKFNVH 187

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +T +++  +N +  P  +     L       +  + + AS  G  +  +  ++   G  T
Sbjct: 188 ATEANY--NNDVGVPRTL-----LGIRPEHDIAVIEMGASHPGDIEKLVRYVEPTCGLIT 240

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H+    + +     K  L++ L  K    +++ +++ +            R+++ 
Sbjct: 241 NVGRAHLQGFGSFEGVKRTKGELYDFL--KAHGGLLFLNESNADLTEMAEQREFDRIVTY 298

Query: 271 G------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           G       QG+ +          +   T       ++    L G + + N L A  + + 
Sbjct: 299 GQDSTADVQGQVVSCAPFLKFTWRALNTPQPSSNTYEVQTRLVGSYNLDNMLAAISVGLH 358

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            G+ +  V   LE  + +P       T +   R+ VD Y    +S+   ++N R +    
Sbjct: 359 FGVTAQQVNHALE--NYIPRNNRSQLTETAHNRLIVDAYNANPSSMSAAIENFRLMQVEN 416

Query: 384 IIVVFG----CGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRS-------EDPEKIRAE 431
            + + G     G    +  + ++G++ A  + D+ +V ++  ++        D E+++AE
Sbjct: 417 KMAILGDMRELGEASGEEHQRVVGELEAAGIDDVWLVGEEFGKTRCAFRKFRDVEEVKAE 476

Query: 432 I 432
           I
Sbjct: 477 I 477


>gi|318057552|ref|ZP_07976275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actG]
 gi|318079765|ref|ZP_07987097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actF]
          Length = 474

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 43/276 (15%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL G      LAVTGT+GK++    +  I + +G  +  +G                
Sbjct: 103 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLSAILEAAGHRTAAVGNIG------------- 149

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + L  A+  L+ +    ++VE SS+ L  H    ++  + +  NL  DH+D+H +  
Sbjct: 150 ---VSLLDAV--LAEEPYDVLAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMA 202

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVLS----------VGY 272
           AY   K R++E        A +Y + D  ++E+++ A    GCR +           +G 
Sbjct: 203 AYAADKGRVYE----GNQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGV 258

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
              ++ + +       QQ     E  D D     P    + NAL AA L  A G+ +  V
Sbjct: 259 VEGYL-VDRAFVPDRAQQAQELAEVADVD----PPAPHNIANALAAAALARAFGVPATAV 313

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              L      P R E V T    G  YVD +  +N+
Sbjct: 314 RAGLRAFRPDPHRIEHVATID--GVAYVDDSKATNT 347


>gi|261206518|ref|ZP_05921218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289565428|ref|ZP_06445877.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|294614711|ref|ZP_06694613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|294618991|ref|ZP_06698486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
 gi|260079228|gb|EEW66919.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289162757|gb|EFD10608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|291592449|gb|EFF24056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|291594652|gb|EFF26034.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
          Length = 453

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 22/190 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   HIDYH T++ Y  AK  L + +  K+   + +       E+ + A     RVL 
Sbjct: 189 TNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILNWNQS----ELQELAQRTKARVLP 244

Query: 270 VGYQGKFIHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +  K +    V A    I+ K++  + +          +PG+  V NAL A  +    
Sbjct: 245 --FSTKEVLEDGVYADDYSIYYKKEKIMEISE------LGVPGKHNVENALAAISVAKLY 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRI 384
           GI +  + E L   H VP R ++VG   +G + Y D   T+  + +M L    T      
Sbjct: 297 GISNEAIRETLHFFHGVPHRTQYVG-EIQGRKFYNDSKATNILATKMALSGFETTK---- 351

Query: 385 IVVFGCGGDR 394
           +V+   G DR
Sbjct: 352 VVLLAGGLDR 361


>gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Lactobacillus crispatus ST1]
 gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus ST1]
          Length = 455

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 142/372 (38%), Gaps = 46/372 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G +FV + G + DGH FI  AI  GA A +    +  +        +
Sbjct: 24  ITSVAFDSRKITDGGLFVPLEGER-DGHEFIASAINNGASATLWKKGHPNK------PED 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ VD+    +   A     K    ++ +TG++GK++    +  +  +     F +  
Sbjct: 77  IAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   ++F  +N +  P  I     L    +  +  + +     G   H  +         
Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GC 265
           T +G  HI++  ++    +AKM +  + L ++   I   D+   +E  ++   A    G 
Sbjct: 184 TMIGEAHIEFFGSRDKIADAKMEI-TDFLREDGEFIFNGDEPLLQERAEKLDQAKATFGF 242

Query: 266 R----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           R    V + G++    H             T +V   +  F  P+ G+  V NA+ A  +
Sbjct: 243 RDEDTVHATGFKSYMHH------------ATFTVNDSEQKFSIPMIGKHNVSNAMAAISV 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN---IR 377
               G     +   L        R E+   ++ G  I  D Y     ++  +L +   + 
Sbjct: 291 GRHFGESDEEIASSLSNFTPTANRMEWEKGDA-GESIMSDIYNSNPTAVRAVLTSFGQVE 349

Query: 378 TITSGRIIVVFG 389
              +GR I V G
Sbjct: 350 VKDNGRRIAVLG 361


>gi|33598264|ref|NP_885907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           parapertussis 12822]
 gi|62900578|sp|Q7W4B2|MURD_BORPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33566822|emb|CAE39037.1| putative peptidoglycan synthesis protein [Bordetella parapertussis]
          Length = 508

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 23/140 (16%)

Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           + LFA  L G     ++   +LA+TGT+GK++V +  +Q+ +  G+S+   G        
Sbjct: 113 IELFARALAGLAESREYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI------ 166

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                    SP  LA  +  L    +  V V E SS  L+  R   +   A    N+ +D
Sbjct: 167 ---------SPAALAALIDALDQDDLPQVWVLELSSFQLETTRT--LAPDAAVVLNVTQD 215

Query: 216 HIDYHQTQQAYFNAKMRLFE 235
           H+D+H   QAY  AK R+ +
Sbjct: 216 HLDWHGDMQAYAQAKARILK 235


>gi|330828043|ref|YP_004390995.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
 gi|328803179|gb|AEB48378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
          Length = 427

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 46/290 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++   +GL+   +G    I + A +                 
Sbjct: 99  VIAITGSNGKSTVTTLVGEMIAEAGLN---VGVGGNIGTPALE----------------- 138

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +    +E SS  L+      ++  A    NL  DH+D +Q    Y  AKM + + 
Sbjct: 139 LLKQPMDLCVLELSSFQLETTH--SLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQH 196

Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +L     A    D     +      N   R L  G     +H + + A+   + V  
Sbjct: 197 SKHILVNRDDAQTLPDVGQVWQSFGLDCNGYGRCLLDGRHWLTLHGEPLLAVDEMKIV-- 254

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                         G     NAL A  LC A+GI  A  L  L +   +P R  FV    
Sbjct: 255 --------------GAHNQANALAAMALCDAVGIPRAAQLTVLRRFEGLPHRARFV--RE 298

Query: 354 RGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
             G  +++ +  +N  +    +  +R    GR++++ G G  + Q   PI
Sbjct: 299 VNGVRWINDSKATNVGATLAAVAGVRESVKGRLLLLAG-GQGKGQDFGPI 347


>gi|308233781|ref|ZP_07664518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 482

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 197/474 (41%), Gaps = 75/474 (15%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+  + DSR++ +  +FVA  G + DG+L+   AI  GA  +V++   S +        N
Sbjct: 26  ISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAGASCVVLTCEASQELIQLAHEHN 85

Query: 90  TPILVV--DNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +L    D+ ++FL   AS    K+P   ++ VTG+ GK++    +  I   S  ++F+
Sbjct: 86  CLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSCGKTTTKDML--IATLS--TTFR 141

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLI 205
                T  + A  N L       +   L+ L++     V V  +  G++    +  + L+
Sbjct: 142 -----TYGTKANHNNL-------IGLPLTILNTPSDAEVIV--AEMGMNHEGEISRMALV 187

Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES----PAIIYAD-DAYSKEV 256
           A       TN+G  H+    +++A   AK  +   +  ++S    P +I  D D ++  +
Sbjct: 188 AKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDFTTFI 247

Query: 257 MKR-AHNAGCRVLSVGYQ-GKFIHLKK-------------VCAIHNKQQVTISVEGKDFD 301
            +  A  A   V  VG +    IH+ K             VC+    ++VT+S  GK   
Sbjct: 248 TEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAGKAC- 306

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                     V +A  A  +C  +G+    +   L H++++H+   R E +        I
Sbjct: 307 ----------VIDACFALRVCEILGVSYDKACCALLHMKQVHM---RMEEIKKPHLPLII 353

Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKI-----ALDLADI 412
              Y     S+   L+ ++  T +GR I + G  G+       + G I     A +L  +
Sbjct: 354 DDSYNAAPASIAQALQVLQQCTCTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMV 413

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             V  D+ +    E + A    G P    +   +  EA++    +L   DV++V
Sbjct: 414 VFVGSDHAQ----EMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILV 463


>gi|300853418|ref|YP_003778402.1| cyanophycin synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300433533|gb|ADK13300.1| cyanophycin synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 874

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 147/353 (41%), Gaps = 46/353 (13%)

Query: 98  TRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +R   S     ++ K+ P  +++VTGT+GK++    +  I ++SG   + +G T+T   +
Sbjct: 459 SRNVASAIVDMMFDKYKPIPVVSVTGTNGKTTTTRLIAHILEKSG---YNVGMTTTGGIY 515

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             +  +          A + L+++ V    +E +  G+ +  L          TN+  DH
Sbjct: 516 VNNKCICKGDTTGYYSAKTILANRDVEAAVLETARGGIIKRGLAYDLADVAVITNITEDH 575

Query: 217 --IDYHQTQQ--AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--------AHNAG 264
             ID   T +  AY  +   L  E + K+   ++ ADD  S  ++ R        + N  
Sbjct: 576 LGIDGIHTMKDLAYVKS---LVGEAVKKDGYVVLNADDLVSISIINRIKSTIIMFSKNKD 632

Query: 265 CRVL--SVGYQGKFIHLK----------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             VL  ++   G  +++K          K+  I   + + IS++GK           + V
Sbjct: 633 NPVLRKNINSGGYGVYIKDNIMYVEKTEKIVPIAKVEDIRISLDGKL---------TYNV 683

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            NA+ A    + + ID +++ +  +  +      PGRF     N  G ++ +DY H    
Sbjct: 684 ENAMAACAAAVGLNIDYSIIRKGFKTFYGDFSFNPGRFNMYDLN--GIKVVLDYGHNIEG 741

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            + +++  + +   R++ V G  GDR       +G I     D   + +D  R
Sbjct: 742 YKAVIRGAKNLKYNRLVGVIGVPGDRTDESVEKIGSIVGKNFDYVYIKEDKDR 794


>gi|238761555|ref|ZP_04622530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           kristensenii ATCC 33638]
 gi|238700069|gb|EEP92811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           kristensenii ATCC 33638]
          Length = 444

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 108/256 (42%), Gaps = 38/256 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ + +G   +Q+G    I           P+   L +  S 
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIG---------VPALTLLQQLAS- 153

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q    V +E SS  L+      ++  A +  N+  DH D Y    Q Y  AK+R++E
Sbjct: 154 -QKQENQLVVLELSSFQLETT--SSLRASAATLLNVTEDHTDRYPFGLQQYRAAKLRVYE 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  V      A  R +S G      HL       NKQQ  I +
Sbjct: 211 ----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGEIWL 255

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +    L      L G     NAL A  L  A+GI  +  L  L     +P RF+ V  
Sbjct: 256 RVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRSSSLTALTTFTGLPHRFQLV-- 313

Query: 352 NSRGGRIYVDYAHTSN 367
             R G  +++ +  +N
Sbjct: 314 LERNGVRWINDSKATN 329


>gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 455

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 126/325 (38%), Gaps = 37/325 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G +FV + G + DGH F+  AI+ GA A +    +           N
Sbjct: 24  ITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGH----------PN 72

Query: 90  TP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            P    ++ VD+    +   A     K    ++ +TG++GK++    +  +  +     F
Sbjct: 73  KPEGIAVIEVDDPLAAMQTLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSK----RF 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +  T   ++F  +N +  P  +     L    +  +  + +     G   H  +  +  
Sbjct: 129 NVHKTQ--ANF--NNEIGVPMTV-----LEMKPNTEILVLEMGMDRPGQLHHLSELTRPD 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAG 264
               T +G  HI++  ++    +AKM + + L  +E    IY  D+   +E  K+   A 
Sbjct: 180 VAVITMIGEAHIEFFGSRDKIADAKMEITDFL--REDGEFIYNGDEPLLQERAKKLDQAK 237

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               + G++    +H     +       T ++   +  F  P+ G+  V NA+ A  +  
Sbjct: 238 A---TFGFEDDDTVHATGFKSY--MHHATFTINDSEQKFSIPMIGKHNVSNAMAAISVGR 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEF 348
             G     +   L        R E+
Sbjct: 293 HFGESDEEIASSLSNFKPTANRMEW 317


>gi|85703613|ref|ZP_01034717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
 gi|85672541|gb|EAQ27398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
          Length = 476

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 142/359 (39%), Gaps = 57/359 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ VS D+R +Q G +FVA+   + DGH F+ QA+A+GA A +VS           +  
Sbjct: 22  QVSGVSIDTRTLQRGDLFVALRAAR-DGHEFVAQALAKGAAAALVSH------VPEGVGG 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS----- 143
           + P+L+V++ +  L         +    ++AVTG+ GK+S    ++ + +  G +     
Sbjct: 75  DAPLLIVEDVQAGLEALGRAGRARSRAKVVAVTGSVGKTSTKEMLRDVLRHQGRTHAAEA 134

Query: 144 --SFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             +   G   T++    D +       +  P  I      + L+     HV+V       
Sbjct: 135 SYNNHWGVPLTLARMPVDTQFAVIEIGMNHPGEI------APLARMARPHVAV------- 181

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                          T +   H++  +  +     K  +FE L P    A+I AD A + 
Sbjct: 182 --------------ITTVAAAHLEAFEDIEGIAREKASIFEGLEPG-GVAVINADIATAP 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVY 313
            +   A     R+LS G      H      +H++  V  +   +    +   +PG     
Sbjct: 227 ILRAEAVRHAARILSFGTARGAHHRLLNVELHDRVTVGHARAWRSPLVYKVGVPGRHFAM 286

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           NAL    +   +G D A+ +  L       GR    GT      + +D A    S+++I
Sbjct: 287 NALAVLAVVQVLGCDRAVAMADLAGWAPPAGR----GTRE---ELVLDLASDGMSIDLI 338


>gi|323704370|ref|ZP_08115949.1| FolC bifunctional protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536436|gb|EGB26208.1| FolC bifunctional protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 425

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 176/430 (40%), Gaps = 77/430 (17%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L +DN R+ L       Y  +P+  L    V GT+GK S  +F+  I   +G   +++G 
Sbjct: 20  LGLDNIRRLLE------YMGNPQKKLKFIHVAGTNGKGSTCAFINSILINAG---YKVGL 70

Query: 150 TST--ISSFAQDNRLTT-----------------------------PSPIYL--AKALSY 176
            ++  +  F +  R+                               P+   L  A A  Y
Sbjct: 71  YTSPYLEEFEERMRINNKNIPKDKLADYVEYVKDVVDRLLADGYHHPTEFELITAIAFKY 130

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              + V  V +E    G    R D   +I  S  ++    IDY    +     +   +E+
Sbjct: 131 FRDENVDFVVLEVGLGG----RFDATNVIDNSLVSV-ISTIDYDHMDKLGDTLEKIAYEK 185

Query: 237 L-LPKESPAII--YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             + KE+  I+  Y  D  + +V++R  N     L +      + +  V  I +  +  I
Sbjct: 186 AGIIKENGIIVSFYQKDE-ALQVIERVANLKKASLDI------LDINDVEIIESNSEYQI 238

Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEF 348
               +D+  L   + G+ Q+YNA +A      +      + E   ++ +     PGR E 
Sbjct: 239 -FNYRDYKNLKICIIGKHQIYNASLALMAVEKLRSQGITISEEAIRVGLADAKWPGRIEV 297

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   SR   I +D AH    + ++ + +   +  R+++V G   D+D  K   M K+ + 
Sbjct: 298 L---SRCPFIVIDGAHNPQGMSVLKEALNLFSYERLVLVIGMLKDKDTDK---MLKLIVP 351

Query: 409 LADIAIVTDD-NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           LADI I T   + R+   E++ AE I G+ P   E  +  +AI  A+   NK+D+++  G
Sbjct: 352 LADIVITTKPVSDRAYTAEEL-AEKIKGVNPLHFEDID--DAINEALRKANKKDLILFCG 408

Query: 467 KGHETVHIVT 476
             +   H+ T
Sbjct: 409 SLYMIGHVRT 418


>gi|194364791|ref|YP_002027401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347595|gb|ACF50718.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stenotrophomonas
           maltophilia R551-3]
          Length = 469

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 96/241 (39%), Gaps = 22/241 (9%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           + +VE SS+   +    G +       NL  +H+D+H ++Q Y   K++L  E  P+   
Sbjct: 166 YWAVELSSYQTGEVARSGARPQVAVVLNLFPEHLDWHGSEQRYIEDKLQLVTEAAPRI-- 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ A D +               LS+    K I   +    H +  +    E   FD  
Sbjct: 224 AVLNAADPH------------LAALSL-PDSKVIWFNQPQGWHMRGDIVHRGEQAVFDTR 270

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG     N         A+G+D+  +   ++    +P R + +G     G  YV+ 
Sbjct: 271 NTPLPGRHNRGNLCAVLAALEALGLDAVALAPAVQDFRPLPNRLQRIGAAE--GLTYVND 328

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNP 420
           +  S +    L  +      RI ++ G G DR       M  +A D+  + IVT   + P
Sbjct: 329 S-ISTTPHASLAALECFAGQRIALLVG-GHDRGLDWTDFMQHMAHDVPPVEIVTMGSNGP 386

Query: 421 R 421
           R
Sbjct: 387 R 387


>gi|15892483|ref|NP_360197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           conorii str. Malish 7]
 gi|30316098|sp|Q92I60|MURD_RICCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15619640|gb|AAL03098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia conorii
           str. Malish 7]
          Length = 500

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 38/147 (25%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I   SGL     G                             
Sbjct: 107 IAITGTNGKSTTTALISHILNSSGLDYPVAGNI--------------------------- 139

Query: 178 SSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAK 230
              GV+ +  +AS  G    L   +LD +K          N+  DH+D HQ    Y  AK
Sbjct: 140 ---GVSALQAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMTCYIAAK 196

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVM 257
            ++F+  + +ES A+I  D+ Y +EV 
Sbjct: 197 SKIFDR-MDQESYAVINIDNDYCREVF 222


>gi|257056721|ref|YP_003134553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586593|gb|ACU97726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 487

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 155/384 (40%), Gaps = 53/384 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-----------AEAIVVSS 75
           ER    V  DSR +  G +FVA+ G + DGH F   A+A G           A A++V  
Sbjct: 24  ERVTGSVEFDSRKVTDGGLFVALPGERADGHDFAASAVAAGAAGVLAAREVDAPAVIVP- 82

Query: 76  AYSLQDFSATIRSNTPILVVDNT----RKFLSLFASRLYGKHPENILAV---TGTSGKSS 128
              L    A  RS       D +       L+  A  +  +  E  L V   TG+SGK+S
Sbjct: 83  --PLPPGQAHERSVALAGDTDGSGAAVLAALAALARHVVTRLSETGLTVVGVTGSSGKTS 140

Query: 129 VASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGV 182
               + Q+ +        +GPT +   SF  +N L  P     A   +      LS++G 
Sbjct: 141 TKDLIAQLLE-------PLGPTVAPPGSF--NNELGHPWTALRADRKTRHLVLELSARGP 191

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            H++  A+   +   R+       G   N+G  H+    +Q+     K  L  E LP E 
Sbjct: 192 GHIAELAA---VAPPRI-------GVVLNVGSAHVGEFGSQEGIARTKGELV-EALPAEG 240

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKV-CAIHNKQQVTISVEGKDF 300
            A++  DD +  E+ +R      RV+ VG   K  +  + V    H +    +   G+  
Sbjct: 241 VAVLNVDDPFVAEMAQRTS---ARVVGVGESPKADVRAENVRLDEHARASFDLVAGGERA 297

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L GE  V NAL AA + + +G+  + V   L        R   V T S G  +  
Sbjct: 298 EVRLQLVGEHHVGNALAAAAVALELGMPLSEVAAGLSAATRRSERRMEVTTRSDGVTVLN 357

Query: 361 D-YAHTSNSLEMILKNIRTITSGR 383
           D Y     S+   LK + ++TS R
Sbjct: 358 DSYNANPESMRAALKTLASMTSSR 381


>gi|169350884|ref|ZP_02867822.1| hypothetical protein CLOSPI_01658 [Clostridium spiroforme DSM 1552]
 gi|169292470|gb|EDS74603.1| hypothetical protein CLOSPI_01658 [Clostridium spiroforme DSM 1552]
          Length = 386

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 126/334 (37%), Gaps = 73/334 (21%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            +F  +     +    +N++ + GT+GK S  +F+++I  + G   + +G  ++      
Sbjct: 22  EQFQEIVTKYSFNVKQKNMIHIAGTNGKGSTVNFIKEILMKHG---YTVGTFTSPYMIVH 78

Query: 159 DNRLTTPS---------------------------PIYLAKALSYLSSQGVTHVSVEASS 191
           ++R+                                I +   L Y     + +  +E   
Sbjct: 79  NDRICVNGNMISDDKLLKIINELEDIIKKENLSMFEIDVLIMLRYFDELDLDYRIIETGI 138

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            GL   + + I  I    TN+G DH      Q    N+     +E+   ++  I      
Sbjct: 139 GGL-CDKTNVIDSICSVITNIGYDH------QFMLGNS----LDEIARHKAGIIKSRKPC 187

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------- 304
           ++ E  K   +                 K+VC  ++ Q     V+  ++ ++F       
Sbjct: 188 FTTESNKEIVDI---------------FKEVCKTNDSQLYVCDVKEVNYPYVFNCLSNEY 232

Query: 305 --PLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                G +QV N ++A  +C   I +D  LV + ++  +  PGRFE      + G IY+D
Sbjct: 233 VLKTGGSYQVKNVVLAINVCNYLIDLDKELVQQAIDCFNW-PGRFE------KFGSIYLD 285

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
            AH  + +  + K I+      I++VF    D+D
Sbjct: 286 GAHNVDGILALKKTIKDQKLEDIVIVFSALSDKD 319


>gi|33603175|ref|NP_890735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           bronchiseptica RB50]
 gi|62900580|sp|Q7WFS0|MURD_BORBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33568806|emb|CAE34564.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
           RB50]
          Length = 510

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 23/140 (16%)

Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           + LFA  L G     ++   +LA+TGT+GK++V +  +Q+ +  G+S+   G        
Sbjct: 113 IELFARALAGLAESREYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI------ 166

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                    SP  LA  +  L    +  V V E SS  L+  R   +   A    N+ +D
Sbjct: 167 ---------SPAALAALIDALDQDDLPQVWVLELSSFQLETTRT--LAPDAAVVLNVTQD 215

Query: 216 HIDYHQTQQAYFNAKMRLFE 235
           H+D+H   QAY  AK R+ +
Sbjct: 216 HLDWHGDMQAYAQAKARILK 235


>gi|229586685|ref|YP_002845186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           africae ESF-5]
 gi|228021735|gb|ACP53443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia africae
           ESF-5]
          Length = 500

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 38/147 (25%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I   SGL     G                             
Sbjct: 107 IAITGTNGKSTTTALISHILNSSGLDYPVAGNI--------------------------- 139

Query: 178 SSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAK 230
              GV+ +  +AS  G    L   +LD +K          N+  DH+D HQ    Y  AK
Sbjct: 140 ---GVSALQAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMTCYIAAK 196

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVM 257
            ++F+  + +ES A+I  D+ Y +EV 
Sbjct: 197 SKIFDR-MDQESYAVINIDNDYCREVF 222


>gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056]
 gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056]
          Length = 828

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 137/329 (41%), Gaps = 35/329 (10%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I+ + +DSR +      +F A+   + DG  +I     +G    VVS     +  +   +
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNDGTRYIRDLYTRGVRNFVVSEEGLKEVETFNFQ 83

Query: 88  SNT-PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +T  +LVV N  K L   A +   +    ++ +TG++GK+ V  ++ Q+          
Sbjct: 84  PSTFNLLVVPNPLKALQKLAEQHRDRFQIPVIGITGSNGKTIVKEWLHQL---------- 133

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EA--SSHGLDQHRLDG 201
           + P   I  S  + ++++  P        LS     G T +++ EA  S  G  +   + 
Sbjct: 134 LSPERVITRSPRSYNSQIGVP--------LSVWQMNGQTELAILEAGISEPGEMRALQNI 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKR 259
           IK   G  TN+G  H      Q+ +F+ + +  E+L L K    +IY  DD +    + +
Sbjct: 186 IKPTIGILTNIGGAH------QENFFSLQEKCMEKLALFKNCDVVIYNGDDEFINNCVGK 239

Query: 260 AHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +  +   +  S     + +++ KV    +   V+      D  F  P   +  + N+L  
Sbjct: 240 SMLSAREIAWSRKDMERPLYINKVEKQEDSTVVSYRYLDMDNTFTLPFIDDASIENSLNC 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              C+ + + +  + E + KL  +  R E
Sbjct: 300 LAACLYLMLPAEQITERMAKLEPIAMRLE 328


>gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
 gi|158449132|gb|EDP26127.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
          Length = 495

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++  +S+  + G +FV I+G++ DGH FI  A+        V++A    +    + S+
Sbjct: 66  LTDICINSKEAKEGDLFVPIIGSRTDGHRFIESALQ-------VAAATLTSEHDNVVVSD 118

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + VD+T K L      +  ++   ++AVTG+ GK++    +      +G+  F 
Sbjct: 119 KAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSVGKTTTREMITAAVS-AGMKCFH 174


>gi|119963916|ref|YP_947471.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter aurescens TC1]
 gi|189028970|sp|A1R5F9|MURC_ARTAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119950775|gb|ABM09686.1| UDP-N-acetylmuramate--alanine ligase [Arthrobacter aurescens TC1]
          Length = 456

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 128/343 (37%), Gaps = 78/343 (22%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENIL 118
           IA G +A  +  A ++   SA IR++ P LV         L      A+ + G     ++
Sbjct: 59  IAVGYDAGNLGDAQTIVAGSA-IRADNPELVAAREAGLPVLHRSEALAATMAG---HRVV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            V GT GKS+  S V  + + +GL  SF IG                        AL   
Sbjct: 115 TVAGTHGKSTTTSMVAVLLKEAGLDPSFAIGAN--------------------VPALGVN 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G + + V A +   D   L+   LIA   TN+  DH+D++ T +A F A    F  L
Sbjct: 155 AAHGSSDIFV-AEADESDGSFLNYRPLIA-VVTNVEADHLDHYGTPEAVF-ASFDDFAAL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRA---------------------HNAGCRVLSVGYQGKF 276
           LP +   +  +DDA ++ +  R                      H+ G            
Sbjct: 212 LPAQGVLLACSDDAGARALADRTASKGTTRVLTYGTSDDADIRLHDGG------------ 259

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                         V+++++G        +PG     NA  A  + + +G++       L
Sbjct: 260 -----------PGDVSVALDGGVHKLELQVPGRHNALNAAAAFAVAVELGVEPGAAAAAL 308

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                   RFE  G   RG R+Y DYAH    +   L   R++
Sbjct: 309 GHFTGASRRFELKG-RGRGVRVYDDYAHHPTEVRAALSAARSV 350


>gi|86358452|ref|YP_470344.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           etli CFN 42]
 gi|118595680|sp|Q2K6B9|MURD_RHIEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86282554|gb|ABC91617.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CFN 42]
          Length = 470

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G  +   G   T         LT   P    KA  Y 
Sbjct: 117 IAITGTNGKSTTTALIAHILKSAGYDTQLGGNIGTAV-------LTLDPP----KAGRYY 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 166 V--------VECSSYQIDLAPT--LNPSAGILLNLTPDHLDRHGTMQHYADVK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     AI+  DD++S  +  R   AG +V+ +
Sbjct: 212 VAGSDVAIVGIDDSHSALIADRVERAGVKVVRI 244


>gi|85373182|ref|YP_457244.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
 gi|84786265|gb|ABC62447.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 498

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 115/286 (40%), Gaps = 29/286 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +FVA+ G   DGH F+ +A A GA A +V               + P 
Sbjct: 59  VEMDSRDVRPGDLFVALKGESMDGHRFVEKAFAAGAAAALVERPV-----------DWPH 107

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++T   L   A     +     + VTG+ GK+ V   +    ++S           +
Sbjct: 108 VLVEDTGAALEALAHAARERADAKRIGVTGSVGKTGVKEAIFAALEKSSRGQAH----RS 163

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + S+  +N +  P  +    A S       G+ H    A   GL  H    + +I    T
Sbjct: 164 VRSY--NNHVGVPLSLARMPARSRYGVFEMGMNHAGEIA---GLTDHVRPHVAVI----T 214

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   HI+   + +A  +AK  +FE L+ K   A+I AD    +++   A   G  ++S 
Sbjct: 215 TIAPAHIENLGSIEAIADAKAEIFEGLV-KGGTAVIPADSEQYEQLRASAEKRGVTIVSF 273

Query: 271 GY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           G         L  + A +    VT  V      F    PGE  V N
Sbjct: 274 GRADHADVRLLDAIPAANGGSLVTAQVRDSRLCFTVAEPGEHWVSN 319


>gi|167036589|ref|YP_001664167.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115016|ref|YP_004185175.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855423|gb|ABY93831.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928107|gb|ADV78792.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 464

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+DY +          R F  L+P +   +   DDA     M   +     +++ 
Sbjct: 184 NVDSDHLDYFKNIDN-IKQSFRQFANLVPPDGFVVACKDDA---NTMYVVNGLNKNIVTY 239

Query: 271 G------YQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G      ++ K I    K CAI +        E    +F   +PG+  VYNAL A  +  
Sbjct: 240 GIYQDSDWKAKNISFDDKGCAIFD----VYYKEEYMGNFKLSIPGKHNVYNALAALAVSH 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID      +L +      RFE  G    G  I  DYAH    ++  L+  +     R
Sbjct: 296 LVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDDYAHHPAEIKATLEAAKNYPHKR 354

Query: 384 IIVVF 388
           II +F
Sbjct: 355 IICIF 359


>gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
          Length = 460

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 152/345 (44%), Gaps = 31/345 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 32  EIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDNGAVASLWKKSY------GTPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             PI+ VD+T   L   A     +    ++ +TG++GK++V   +  I      S++++ 
Sbjct: 85  GIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILS----STYRVH 140

Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            T    +F  ++++  P  I  + +   +L  +    +S +     L +     + +I  
Sbjct: 141 KTK--GNF--NSQIGLPLTILEMERNTEFLILE--MGMSEKGQIRNLSRIAQPDVAII-- 192

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +G+ H++   +++    AK  + + L   +    +Y  D    E +   H     +
Sbjct: 193 --TMIGQSHLETLGSREEIAKAKFEIVDGL--HDDGLFLYNGD----EPLLSQHINTLGI 244

Query: 268 LSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S  + GK+ + L       ++  V   +      +  PL G+  ++N +V   +     
Sbjct: 245 ESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYK 304

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + +  + E L+++++   RF+F+   ++ G   ++ A  +N   M
Sbjct: 305 VSTEKIQEALQQINITQMRFQFL--TAKAGFTIINDAWNANPSSM 347


>gi|94676482|ref|YP_588948.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|166222957|sp|Q1LSW6|MURC_BAUCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94219632|gb|ABF13791.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 490

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 95/444 (21%), Positives = 161/444 (36%), Gaps = 84/444 (18%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP+ +   A  +VVSSA S+ +          I ++        L   R YG      +A
Sbjct: 72  IPENVLD-ANVVVVSSAISIANPEIVAAKKLRIPIITRAEMLAELMRFR-YG------IA 123

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           + GT GK++  + +  I   +GL    I     I S  Q  RL   S             
Sbjct: 124 IAGTHGKTTTTAMLASIYLEAGLDP-TIVNGGLIKSIGQYARLGYGS------------- 169

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               ++  EA    L    L  I  I    TN+  DH++ +Q    Y       F   LP
Sbjct: 170 ----YLIAEADESDLSFLHLQPIVTI---ITNIEADHMENYQGDFNYLKNTFLKFIHKLP 222

Query: 240 KESPAIIYADDAY--------SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                I+  DD          S+ ++    N+        Y  K  H+     ++ + + 
Sbjct: 223 FYGKGIMCLDDPVIRDLLPHISRHIITYGFNSKANFRLTNYHQKEAHVS--FQLYRQDKP 280

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+ +E          PG     NA+ A  +    GI    +L+ L +   +  RF+ +G 
Sbjct: 281 TLRIELNS-------PGRHNALNAVAAIAVATEEGIADKNILQALFRFKGINRRFDKLGC 333

Query: 352 ------NSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIM 402
                 N + G + +  DY H    L+  ++++R      R+++VF     R    R + 
Sbjct: 334 FSLKKINGKNGVVMLVEDYGHHPTELQATIQSVRIGWPDKRLVMVFQP--HRYTRTRDLY 391

Query: 403 GKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----------------PGFIEKGN 444
                 L   D+ ++ D  P  E+P       I GI                P FI + N
Sbjct: 392 EYFVGVLSKVDVLLMLDIYPAGENP-------IAGIDSKSLCCTIRNTSKLDPIFIHELN 444

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
           ++  +    ++L   D++++ G G
Sbjct: 445 KLPVMLA--QLLQDNDLVLMQGAG 466


>gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 445

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 151/374 (40%), Gaps = 59/374 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIR 87
           ++   S DSR +  G +F A+ G + DGH F+  A+ +GA   VV         FS  + 
Sbjct: 21  RVEGFSIDSRQVGEGDVFFALKGERHDGHDFVTDAVDRGAVGCVVERDVEHAGKFSIKVS 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           S    L      + L+L+   ++      ++ V G+ GK++    +  +   +  +SF+ 
Sbjct: 81  STQEAL------RELALYRRGIF---RGEVVGVAGSVGKTTTKELIHHLLSNAA-ASFR- 129

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS--VEASSHGLDQHRLDGIKLI 205
                ++S      +    P+ +  A+  L +  V  V   VE +           +++I
Sbjct: 130 -SEGNLNSQIGLPLVVCNMPLEVDYAVLELGASAVGDVERLVEVAQ--------PKVRVI 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAYSKEVMKRAHNA 263
               T LG +H++   T +        +F     ++S A+I  YA + Y    + R    
Sbjct: 181 ----TALGEEHLESFGTLEDVVKGNGEIFRGF-TEDSRAVIPHYALEYYD---LPRE--- 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVA 318
             RV + G  G            N  +V +S++G +F+F       PL     V N L A
Sbjct: 230 --RVTTFGEGGDL----------NAGKVRLSLKGTEFEFWGEGFSVPLLSRGVVQNVLAA 277

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
            G+  ++G D     E L+      GR   +   + G    VD  + +N  S+   L  +
Sbjct: 278 FGVLTSLGYDPRDFREALKSFTPPQGRMNLL---NFGNFFVVDDTYNANPPSVRNALTTL 334

Query: 377 RTI-TSGRIIVVFG 389
            ++ T+ + + V G
Sbjct: 335 ASLQTTSKKVAVLG 348


>gi|58583448|ref|YP_202464.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428042|gb|AAW77079.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 500

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 125/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 97  GTDCVVVSSA---------IRDDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 147

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 148 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 189

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    +
Sbjct: 190 LVAEADESDGSFLRLNPLMAV---ITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLS 246

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 247 LLCIDD---PEVAALAGRTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 303

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T S G R+ V
Sbjct: 304 TLALPGRHNVLNALAAAAIGWQLGVAPGTIARALENFAGIGRRFNDLGEVTTSTGARVRV 363

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 364 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 394


>gi|315181132|gb|ADT88046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           NCTC 11218]
          Length = 439

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 125/310 (40%), Gaps = 48/310 (15%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+++  +G    + +    + L  P+
Sbjct: 100 ELFAWHVDKPVIAITGSNGKSTVTDLTGVMANAAGIAT-AVGGNIGVPAL---DLLAQPA 155

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +Y+ +  S+          +E +S          + + A +F NL  DH+D +     Y
Sbjct: 156 ELYVLELSSF---------QLETTS---------SLAVTAAAFLNLSEDHMDRYDGMTGY 197

Query: 227 FNAKMRLFEELLPKESPAIIYAD------DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
             AK+R+FE        A++ AD      DAYS   ++          +  + GK + L 
Sbjct: 198 RQAKLRIFEH----AQTAVVNADDTQTYPDAYSGRTVRFGLEQSAEFTTAQHDGKEVLLA 253

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                 N + V  + +         L G   V N L    L  A G++    L  L+   
Sbjct: 254 ------NGEVVLPTSD-------LSLVGRHNVANVLTVLALLDAAGVNYTNTLPALKSYT 300

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKR 399
            +  R + V  N +G +   D   T+ +  +   +  T+     ++V G G   D    +
Sbjct: 301 GLTHRCQVVADN-QGIKWVNDSKATNVASTLAALSGLTLNGTLYLLVGGVGKGADFTPLK 359

Query: 400 PIMGKIALDL 409
           P++  + L L
Sbjct: 360 PVLETLPLTL 369


>gi|325923953|ref|ZP_08185543.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
 gi|325545579|gb|EGD16843.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
          Length = 477

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 125/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    +   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDSDHLENYGNDFSRIQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALASKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T S G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVAPETIARALENFAGIGRRFNDLGEVTTSTGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|309801877|ref|ZP_07695993.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308221492|gb|EFO77788.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 288

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 17/193 (8%)

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFE- 347
           +I+  G D  +F   L G+F   NAL A  L    G+  DSA  +  +E +HV PGR E 
Sbjct: 73  SIAANGHDLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSA-AMHAMESVHV-PGRMEL 130

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGK 404
           F GT+     I VDYAH   S+  ++  +         RI +V G  G++   +R  + +
Sbjct: 131 FTGTDGDTVAI-VDYAHNYTSVRALIDFVEQRYCERKPRITLVAGSAGNKAFDRRQEIVE 189

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKG---NRIEAIRTAIEMLNKQ- 459
            A D     + T ++  +E    I  E++ H     ++     +R++AI +A+E  +   
Sbjct: 190 AAQDRIARFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHD 249

Query: 460 --DVLVVAGKGHE 470
             DV+++ GKGHE
Sbjct: 250 GLDVILIIGKGHE 262


>gi|301053716|ref|YP_003791927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis CI]
 gi|300375885|gb|ADK04789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 250

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA A +   +Y       +   
Sbjct: 30  EIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYVKEAMDNGAIASLWKKSY------GSPPK 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------G 141
             PI+ VD+T   L   A     +    ++ +TG++GK++V   ++ I + +       G
Sbjct: 83  GIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKG 142

Query: 142 LSSFQIGPTSTISSFAQDNRL 162
             + QIG   TI    +D  +
Sbjct: 143 NFNSQIGLPLTILEMKRDTEI 163


>gi|256751648|ref|ZP_05492523.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749457|gb|EEU62486.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 464

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+DY +          R F  L+P +   +   DDA     M   +     +++ 
Sbjct: 184 NVDSDHLDYFKNIDN-IKQSFRQFANLVPPDGFVVACKDDA---NTMYVVNGLNKNIVTY 239

Query: 271 G------YQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G      ++ K I    K CAI +        E    +F   +PG+  VYNAL A  +  
Sbjct: 240 GIYEDSDWKAKNISFDDKGCAIFD----VYYKEEYMGNFKLSIPGKHNVYNALAALAVSH 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID      +L +      RFE  G    G  I  DYAH    ++  L+  +     R
Sbjct: 296 LVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDDYAHHPAEIKATLEAAKNYPHKR 354

Query: 384 IIVVF 388
           II +F
Sbjct: 355 IICIF 359


>gi|168491448|ref|ZP_02715591.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183574119|gb|EDT94647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS 140
           +   +
Sbjct: 121 LLSTT 125


>gi|309777768|ref|ZP_07672716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914452|gb|EFP60244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 464

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 98/231 (42%), Gaps = 35/231 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E KI  V  DSR +  G +++ I G   +GH ++ QAI  GA+A++              
Sbjct: 27  EEKIQGVCIDSRKVVEGNLYIPIHGVNNNGHAYVQQAIEHGAKAVLWERK---------- 76

Query: 87  RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             N P    +++V++T   L   A     +    ++ +TG++GK+S    +  +  +  +
Sbjct: 77  EQNPPHEVVVILVEDTTVALQQLAKAYRDQLNLKVVGITGSNGKTSTKDILASVLAKHFI 136

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHRL-- 199
           +        T+ +F  +N +  P        L+ LS S+      VE     L++     
Sbjct: 137 TQ------KTLGNF--NNEIGVP--------LTLLSLSENCEAAVVEMGMENLNELSFLT 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           + ++      +N+G  H++   T +    AK+ + E L   E   +IY  D
Sbjct: 181 NIVRPDIAIISNVGTAHLENLGTMENIAKAKLEIVEGL--NEHGLLIYNGD 229


>gi|167039242|ref|YP_001662227.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter sp.
           X514]
 gi|300913882|ref|ZP_07131199.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307725433|ref|YP_003905184.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
 gi|166853482|gb|ABY91891.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter sp. X514]
 gi|300890567|gb|EFK85712.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307582494|gb|ADN55893.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
          Length = 464

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+DY +          R F  L+P +   +   DDA     M   +     +++ 
Sbjct: 184 NVDSDHLDYFKNIDN-IKQSFRQFANLVPPDGFVVACKDDA---NTMYVVNGLNKNIVTY 239

Query: 271 G------YQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G      ++ K I    K CAI +        E    +F   +PG+  VYNAL A  +  
Sbjct: 240 GIYQDSDWKAKSISFDDKGCAIFD----VYYKEEYMGNFKLSIPGKHNVYNALAALAVSH 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID      +L +      RFE  G    G  I  DYAH    ++  L+  +     R
Sbjct: 296 LVGIDIKKASHYLTEFKGTHRRFEVKGI-VDGITIVDDYAHHPAEIKATLEAAKNYPHKR 354

Query: 384 IIVVF 388
           II +F
Sbjct: 355 IICIF 359


>gi|297545530|ref|YP_003677832.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843305|gb|ADH61821.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 464

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+DY +          R F  L+P +   +   DDA     M   +     +++ 
Sbjct: 184 NVDSDHLDYFKNIDN-IKQSFRQFASLVPPDGYVVACKDDA---NTMYVVNGLNKNIVTY 239

Query: 271 G------YQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G      ++ K I    K CAI +        E    +F   +PG+  VYNAL A  +  
Sbjct: 240 GIYKDSDWKAKNIGFDDKGCAIFD----VYYKEEYMGNFKLSIPGKHNVYNALAALAVSH 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID      +L +      RFE  G    G  I  DYAH    ++  L+  +     R
Sbjct: 296 LVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDDYAHHPAEIKATLEAAKNYPHKR 354

Query: 384 IIVVF 388
           II +F
Sbjct: 355 IICIF 359


>gi|254524866|ref|ZP_05136921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stenotrophomonas
           sp. SKA14]
 gi|219722457|gb|EED40982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stenotrophomonas
           sp. SKA14]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 113/288 (39%), Gaps = 24/288 (8%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           + +VE SS+   +    G         NL  +H+D+H ++Q Y   K+RL  E  P+   
Sbjct: 166 YWAVELSSYQTGEVARSGAHPQVAVVLNLFPEHLDWHGSEQRYIEDKLRLVTEAAPRI-- 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ A D +               LS+    + +   +    H +  V    E   FD  
Sbjct: 224 AVLNAADPH------------LAALSL-PDSEVVWFNQPQGWHMRGDVVHRGEQPVFDTR 270

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG     N         A+G+D+  +   ++    +P R + +G     G  YV+ 
Sbjct: 271 NTPLPGRHNRGNLCAVLAALEALGLDAVALAPAVQDFRPLPNRLQRIGVAD--GLAYVND 328

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNP 420
           +  S +    L  +      RI ++ G G DR       M  +A D+  + IVT   + P
Sbjct: 329 S-ISTTPHASLAALECFAGQRIALLVG-GHDRGLDWTDFMQHMAHDVPPVEIVTMGSNGP 386

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           R     +  A+   G  G    G+  EA+  A   L +Q  +V+   G
Sbjct: 387 RIHAMLQPLADA--GRFGLHAAGDLPEAMALARAALGEQGGVVLLSPG 432


>gi|123966762|ref|YP_001011843.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9515]
 gi|158512733|sp|A2BY75|MURD_PROM5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|123201128|gb|ABM72736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 477

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 48/262 (18%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + +TGT+GK++V   +  I + + L          ++ FA +  + TP    L K   
Sbjct: 121 NWIGITGTNGKTTVTHLLSHILRTNNL----------LAPFAGN--IGTP----LCKIAY 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            + S+ +  +  E SS+ ++   L  IK   G +T    DH+D H+T   YF  K  L  
Sbjct: 165 SIKSKNIDWLVAELSSYQIEIATL-CIKPKIGIWTTFTADHLDRHKTLDNYFKIKNSLL- 222

Query: 236 ELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQ 290
               K+S   IY  DD + +E  K + + G  + +   Q    H    +     I  +Q+
Sbjct: 223 ----KQSEFRIYNYDDIHLRENFK-SLSKGIWITTSSKQSDLDHCDYWINNEDFIVERQE 277

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +S++       F L G     N L+A      IG+    +   L     +P R E + 
Sbjct: 278 NLLSLKN------FKLKGNHNTQNLLLAIAAARKIGLSPEKIKNALLSYEQLPHRMETI- 330

Query: 351 TNSRGGRIYVDYAHTSNSLEMI 372
                        + SN LE+I
Sbjct: 331 -------------YQSNKLEII 339


>gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 454

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 140/347 (40%), Gaps = 40/347 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 26  EIHGVCIDSKNMKEGNLFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141
             PI+ VD T   L   A     +    ++ +TG++GK++V   ++ I        +  G
Sbjct: 79  GVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIESILSSTYRVHKTKG 138

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + QIG   TI    ++         +L   +       + ++S  A            
Sbjct: 139 NFNSQIGLPLTILEMKRNTE-------FLILEMGMSEKGQIRNLSRIAQPD--------- 182

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +G+ H++   +++    AK+ + + L  +E+   +Y  D        +  
Sbjct: 183 ----VAVITMIGQSHLETLGSRKEIAKAKLEIIDGL--RENGLFLYNGDEPLLSRNNKTS 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +  C+      +     L       ++  V   +      +  PL G+  ++N +V   +
Sbjct: 237 SVNCKTFG---EKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAV 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                + +  + E L+++++   RF+F+ T  +G  I  D  + S S
Sbjct: 294 GQFYKVPTEKIQEALQQINITQMRFQFL-TAKKGFTIINDAWNASPS 339


>gi|78221629|ref|YP_383376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
 gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
          Length = 470

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 151/369 (40%), Gaps = 37/369 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+DSR +Q G +FV + G + DGH ++  A  +G + ++    +  ++    +   
Sbjct: 25  VEGVSTDSRTVQPGELFVPLRGERFDGHDYLGAACDRGVQVVLAEHQWLEKN---ELPPG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              + VD+T + L   A     +    ++AVTG++GK++    +  I         Q GP
Sbjct: 82  VSAVAVDDTLEALGDLACFHRQRFAIPVVAVTGSNGKTTTKEMLAAILG-------QTGP 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
              + +    N L     I L + L  L +S     + +  S+ G     +D +  IA  
Sbjct: 135 --GLKTEGNLNNL-----IGLPQMLLRLDNSHRWAVLEMGMSAFG----EIDRLAEIARP 183

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN    H++   + +    AK  LF   LP E  A+  ADD     + +     G
Sbjct: 184 DVGIITNAYPAHLETLGSVEGVARAKGELFLR-LPAEGCAVFNADDPL---IARCPSPDG 239

Query: 265 CRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            R +S G     +  + V  +  N Q+  + +  +         G   + NAL AA    
Sbjct: 240 VRRVSFGLHNADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIANALAAAAAAH 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITS 381
            +G+ +  +   L +      RF        G  I +D ++ +N  S+   L  +R I +
Sbjct: 300 VLGVPTETIARGLGEFSPYARRFNL---EEVGDVILIDDSYNANPASMAAALTTLREIRA 356

Query: 382 G-RIIVVFG 389
           G R + V G
Sbjct: 357 GRRAVAVLG 365


>gi|253998173|ref|YP_003050236.1| UDP-N-acetylmuramate--L-alanine ligase [Methylovorus sp. SIP3-4]
 gi|313200242|ref|YP_004038900.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
 gi|253984852|gb|ACT49709.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. SIP3-4]
 gi|312439558|gb|ADQ83664.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
          Length = 465

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 110/279 (39%), Gaps = 34/279 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S +  I   +G+  +F IG    + + + + RL T   I    A + 
Sbjct: 108 IAVAGTHGKTTTTSLIASILAEAGMDPTFVIG--GRLEAASANARLGTGEFIV---AEAD 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S     H+S                  +    TN+  DH+D +             F +
Sbjct: 163 ESDASFLHLSP-----------------VISVVTNIDADHMDTYGHDFEKLKGAFVEFLQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS- 294
            LP    A++  DD   + ++         ++  G+ +   I  K V A +     T+  
Sbjct: 206 QLPFWGMAVLCIDDPNIRAILPSVTKP---IMPYGFSEDARIRGKNVRADNGTMHFTVQR 262

Query: 295 VEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-T 351
           + G   +FD    LPG   V NAL A  +   + +  A +++ L +   V  RFE  G  
Sbjct: 263 INGVTTEFDVTLNLPGNHYVLNALAAIAVASELNVPDAAIIKALREFKGVGRRFERYGEV 322

Query: 352 NSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
            +R G  +    DY H    ++ ++   R    GR +V+
Sbjct: 323 PARNGGQFTLIDDYGHHPVEMQAVIAAARGAFPGRRLVL 361


>gi|241760221|ref|ZP_04758317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
 gi|241319332|gb|EER55797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
          Length = 438

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M    + ++ + +DSR IQ G +F A+ G + D H F+   +A GA A+VVS     +D 
Sbjct: 1   MPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSR----EDC 56

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           +A   +    L V +T   L   A          +  +TG+SGK++V   +  + +
Sbjct: 57  AALKGA----LKVGDTLVALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLR 108


>gi|258511259|ref|YP_003184693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477985|gb|ACV58304.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 458

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 141/359 (39%), Gaps = 55/359 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I A+TG++GK++  + V ++ + SG      G   T      D     P  + + +  S+
Sbjct: 119 IYAITGSNGKTTTTTLVGEMLKASGYHPIVAGNIGTPVCDVVDQ----PGDLLVLEVSSF 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                                +LDG        G+  N    H+DYH T +AY  AK +L
Sbjct: 175 ---------------------QLDGTHTFHPRGGALLNFYPAHLDYHGTYEAYQQAKWKL 213

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F    P +  AI+  D A    V  RA     RV     +G     + V  I       +
Sbjct: 214 FANQTPDDV-AILNWDQAL---VRDRAGELAARVRGFSLEGAPFD-EGVGVIDG---ALV 265

Query: 294 SVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +V G++   + P     LPG   + NA  AA L +A G     V   L     V  R EF
Sbjct: 266 AVRGRERTPILPVDQVALPGRHNLQNAAAAAALALAAGASVEAVARVLATFQGVEHRLEF 325

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIAL 407
           V   S G R Y D   T+   +   + +R+   G   VV+  GG DR     P++  I+ 
Sbjct: 326 VREVS-GVRYYNDSKATNP--DAARQALRSFERG---VVWIAGGLDRGISFDPLLPDISG 379

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +    ++       E  EK+R  +   G+       +  EA+R A  M    DV++++
Sbjct: 380 RVRAAVLL------GETKEKLREVLARAGVSTCAFAASMEEAVREASRMAEPGDVVLLS 432


>gi|33593956|ref|NP_881600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis Tohama I]
 gi|62900577|sp|Q7VUQ1|MURD_BORPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33564030|emb|CAE43296.1| putative peptidoglycan synthesis protein [Bordetella pertussis
           Tohama I]
 gi|332383374|gb|AEE68221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis CS]
          Length = 510

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 23/140 (16%)

Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           + LFA  L G     ++   +LA+TGT+GK++V +  +Q+ +  G+S+   G        
Sbjct: 113 IELFARALAGLAESREYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI------ 166

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                    SP  LA  +  L    +  V V E SS  L+  R   +   A    N+ +D
Sbjct: 167 ---------SPAALAALMDALDQDDLPQVWVLELSSFQLETTRT--LAPDAAVVLNVTQD 215

Query: 216 HIDYHQTQQAYFNAKMRLFE 235
           H+D+H   QAY  AK R+ +
Sbjct: 216 HLDWHGDMQAYAQAKARILK 235


>gi|304440571|ref|ZP_07400457.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304370947|gb|EFM24567.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 510

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 34/291 (11%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS----SFAQDNRLT 163
           RL  +    ++ +TG+ GK+SV  F   +         Q  P+S  +    S   +N L 
Sbjct: 154 RLKAESGLKVIGITGSFGKTSVKFFTSTMLDEK--FRVQNTPSSYNTPMGLSKVINNELD 211

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           +   I+LA+  +Y    G  H   E +S  L Q  +       G  T +G  H+  ++T 
Sbjct: 212 SSREIFLAELGAY--KPGEIH---EVAS--LVQPDI-------GVITAIGPTHMQMYKTI 257

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-----VLSVGYQGKFIH 278
           +     K  L E+ L +   AI   D+ Y +E+  +      R      + + Y  K I 
Sbjct: 258 ENIMKTKYELIED-LDENGTAIFNYDNKYVRELADKTTKKTIRYGTKDFMKLDYYAKDIE 316

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           + +  +        +S E    +    L GE  V N L +  + + +G+    V + +EK
Sbjct: 317 VSERGSTF----TLVSKEKGSIECTTKLLGEHSVQNLLASVAIGMELGMSLEEVKDRIEK 372

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVV 387
           +  V  R   +    +GG I +D A  SN       LK +     G+ I+V
Sbjct: 373 IESVEHRLNLI--EGQGGVIVIDDAFNSNPVGFRAALKVLSQFKDGKKIIV 421


>gi|166710653|ref|ZP_02241860.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 477

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 125/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IRDDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    +
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLS 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGRTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTATPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T S G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVAPGTIARALENFAGIGRRFNDLGEVTTSTGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|317061752|ref|ZP_07926237.1| folylpolyglutamate synthase [Fusobacterium sp. D12]
 gi|313687428|gb|EFS24263.1| folylpolyglutamate synthase [Fusobacterium sp. D12]
          Length = 414

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 147/358 (41%), Gaps = 71/358 (19%)

Query: 113 HPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT------ 163
           HPE    I+ + GT+GK S  + +++I   +G   +++G  ++      + R+       
Sbjct: 33  HPERAYKIIHIAGTNGKGSTTTTLEKILLEAG---YRVGKYTSPHILKFNERIVANGVQI 89

Query: 164 -----------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                                  T   I  A   SY   +G+ +V +E    G    RLD
Sbjct: 90  SEEEIEYYYYQVEKIMKEEKIDATFFEITTAMMFSYFRDKGLDYVVLETGMGG----RLD 145

Query: 201 GIKL---IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
              +   I    TN+  DH +Y      Y  AK +     + K  P +I AD    +E +
Sbjct: 146 ATNVSEAILCIITNVSLDHTEY-LGDSIYKIAKEKAG---IIKNCPKVIVADQ--QEEFL 199

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHN----KQQVT-ISVEGKDFDFLFPLPGEFQV 312
           +        +++V        L K    H     +  VT I +EGK + F   L G++Q 
Sbjct: 200 QAILEEKAELINV--------LNKYADAHYTLDFENFVTHIDIEGKQYRF--SLFGDYQY 249

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           +N L A      +GI   ++ +  EK+     RFE V   S+   + +D AH  + +  +
Sbjct: 250 HNFLCAYEAAKQLGISEDIIQKAAEKVR-WECRFEVV---SKEPLVILDGAHNPDGVREL 305

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428
           +K ++     R + +      RD+  + ++ ++  +++D  ++T  DDNPR    E++
Sbjct: 306 VKIVKQHYQKREVAIL-TSILRDKDVKTML-EMMTEISDDILLTSLDDNPRGSTAEEL 361


>gi|303327587|ref|ZP_07358028.1| tetrahydrofolate synthase [Desulfovibrio sp. 3_1_syn3]
 gi|302862527|gb|EFL85460.1| tetrahydrofolate synthase [Desulfovibrio sp. 3_1_syn3]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR + V        + +D AH  + +  +L+ +          VF C GD+D     +
Sbjct: 285 LPGRLQSVPGTKDSPPLLLDGAHNPHGMRALLRALDEAGIRPAGAVFSCLGDKDWHTSAL 344

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           M K  L  A + I   DNPR+ DP ++ A    G+P
Sbjct: 345 MLKHWLGAAPLFIPALDNPRAADPREV-ARACDGLP 379


>gi|300933353|ref|ZP_07148609.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium resistens
           DSM 45100]
          Length = 481

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 117/300 (39%), Gaps = 64/300 (21%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPS-----PIYLAKA 173
           + GT GK+S  S      Q +G   SF IG         Q NR  T +      +++A+A
Sbjct: 117 LAGTHGKTSTTSMAVAALQAAGWDPSFAIG--------GQLNRAGTNAHHGTGDVFVAEA 168

Query: 174 ----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S+LS Q    V+V                      TN+  DH+DY  T++AY   
Sbjct: 169 DESDGSFLSYQ--PEVAV---------------------VTNVEPDHLDYFGTEEAYREV 205

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKR------AHNAGCRVLSVGYQGKFIHLKKVC 283
             R F   +      ++  DDA S+ + +       A     R+L  G +       +V 
Sbjct: 206 FER-FAGCVVTGGTLVVCLDDAGSRALAQSLSRSIPADERDYRILGYGTRAAVEDAPEVE 264

Query: 284 AIHNKQQVTISVEGKD-----FDFLFP------LPGEFQVYNALVAAGLCIAIGIDSALV 332
           A    + + I+  G +     FD   P      +PG   V NA  A      +G D   +
Sbjct: 265 AGAIIEDMRITPAGTEVSVRFFDDEAPRVLRVAIPGSHMVLNATAAVLGGALLGADIDKL 324

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL----KNIRTITSGRIIVVF 388
           LE + +   V  RFE+ G+ +    +Y DYAH    +  +L    + I     GR+I VF
Sbjct: 325 LEGIAEFDGVRRRFEYHGSVND-VHVYDDYAHHPTEVTAVLSAARERIEAQGKGRVIAVF 383


>gi|326315568|ref|YP_004233240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372404|gb|ADX44673.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 672

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 33/144 (22%)

Query: 102 LSLFASRL------YGKHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPT-- 150
           LSLF+  L      +G  P  +LA+TGT+GK++V S    + + +G S   +  IGPT  
Sbjct: 268 LSLFSMALAALRESHGYAPA-VLAITGTNGKTTVTSLTGLLVECAGRSVAVAGNIGPTLL 326

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+      + L    P      LS     G T                 G +  A +  
Sbjct: 327 DTLGRHLDADTL----PQAWVLELSSFQLDGAT-----------------GFEPTAATVL 365

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLF 234
           N+ +DH+D+H   QAY  AK R+F
Sbjct: 366 NITQDHLDWHGDMQAYARAKARIF 389


>gi|328943770|ref|ZP_08241235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
 gi|327491739|gb|EGF23513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 491

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+  + DSR++ +  +FVA  G + DG+L+   AI  GA  +V++   S +        N
Sbjct: 35  ISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAGASCVVLTCEASQELIQLAHEHN 94

Query: 90  TPILVV--DNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSS 128
             +L    D+ ++FL   AS    K+P   ++ VTG+ GK++
Sbjct: 95  CLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSCGKTT 136


>gi|149371575|ref|ZP_01890991.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
 gi|149355202|gb|EDM43762.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
          Length = 444

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 115/281 (40%), Gaps = 28/281 (9%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           L   +LDGIK  A      TNL  DH+D Y      Y  +K R+   +   E    IY  
Sbjct: 157 LSSFQLDGIKDFAPHIAVLTNLSPDHLDRYEYDYDKYIASKFRI--TMNQTEEDYFIY-- 212

Query: 250 DAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LF 304
           DA  +E+ K    H    + L    + KF       A     Q+ I++    F       
Sbjct: 213 DADDEEITKWMSVHEIKAKKLPFSLKQKFDE----GAYIKDNQIVITINNTHFTMSIAAL 268

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  V NA+ A  +   + I  A + E LE    V  R E V     G  +YV+ + 
Sbjct: 269 GLKGQHNVKNAMAATTVATLLKIRKATIRESLENFQGVEHRLEKVV--KIGNVLYVNDSK 326

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +N +      + ++TS  + +V G   D+      ++  +   +  I  +  DN     
Sbjct: 327 ATN-VNATYYALDSMTSPTVWIVGGV--DKGNNYEDLLPLVNEKVKAIICLGVDN----- 378

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +KI ++  + +   +E  +  EA++ A ++  + D ++++
Sbjct: 379 -QKIISQFGNVVDMMVEASSMAEAVKVAYKLSERNDTVLLS 418


>gi|157963624|ref|YP_001503658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           pealeana ATCC 700345]
 gi|157848624|gb|ABV89123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           pealeana ATCC 700345]
          Length = 439

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 79/169 (46%), Gaps = 27/169 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV+S   + +     +  +  I V+ +   F     +R   +    ++ +TG++GK+
Sbjct: 67  AQQIVISPGIACETPEVRVAFDMGIEVIGDVELF-----ARAVAQTSAKVIGITGSNGKT 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + SG SS+ +G    + +    + L  P  +Y+                +
Sbjct: 122 TVTTLVGEMAKASG-SSYAVGGNIGVPAL---DLLLEPKDLYV----------------L 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           E SS  L+      ++ +A +  N+  DH+D +   ++Y  AK++L+E+
Sbjct: 162 ELSSFQLETTY--SLQCVAATCLNISEDHMDRYSDLESYRQAKLKLYEQ 208


>gi|75675245|ref|YP_317666.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
 gi|109892715|sp|Q3STS7|MURC_NITWN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74420115|gb|ABA04314.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
          Length = 467

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+D+ +T  A  +A  R F E +P    A++  D    + ++ R  +       
Sbjct: 181 TNVDAEHLDHFKTFDAVQDA-FRSFVENVPFYGFAVMCIDHPVVQAMVGRIEDRRIITYG 239

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R++ +   G   H K V   + K      +     D + P+PG     NA  A
Sbjct: 240 QNPQADVRLVDLAPNGGGSHFK-VMFRNRKTDAAHEIS----DLVLPMPGPHNALNATAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +GI  A + + L     V  RF   G    G  +  DY H    +  +LK  R 
Sbjct: 295 IAVAHELGITDATIRKALAAFGGVKRRFTRTG-EWNGVTVIDDYGHHPVEIAAVLKAARE 353

Query: 379 ITSGRIIVV 387
            T GR+I V
Sbjct: 354 STDGRVIAV 362


>gi|307298500|ref|ZP_07578303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915665|gb|EFN46049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 441

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 14/109 (12%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F +Q  +R I     DSR + AG +F+ + G K DG+ F+ +A+++GA  +    A+  Q
Sbjct: 10  FLLQTEDRNI---VIDSRKVSAGDVFIGLKGEKVDGNDFVGEALSKGASLVFSDKAFDDQ 66

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSS 128
                      +L VD+T + L   A  +  K    N + +TG++GK++
Sbjct: 67  ----------RVLRVDDTNEILIEAAKSILSKSKLSNRIGITGSNGKTT 105


>gi|289549278|ref|YP_003474266.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
 gi|289182895|gb|ADC90139.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
          Length = 448

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 149/363 (41%), Gaps = 45/363 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G+ GK++  S +  I   +GL      PT  I    Q  R    + +         
Sbjct: 109 VAVCGSHGKTTTTSMIAYILHEAGLD-----PTVLIGGILQ--RFNGNARL--------- 152

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   VS    S G        + +I    TN+ R+H+D+++   +   A +  F   
Sbjct: 153 -GKGDFIVSEADESDGSFLKLTPTVAVI----TNIDREHLDFYKDYDSIRKAFLE-FANS 206

Query: 238 LPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQV 291
           +P    +++ ADD    +++    K+ +  G +  +        HL  K +  +      
Sbjct: 207 VPFYGFSVLNADDEGCSQIIPYVSKKHYTYGIQTEA--------HLMAKNLRLLEGTYSF 258

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   GK+  +    +PG+  V NAL +  + + + +   ++ E LE       R E  G
Sbjct: 259 DVVWMGKNLGNIHLKVPGKHNVQNALASILVALQMDVSFDVIKEALESFRNAERRLELKG 318

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA--L 407
              +G  +Y DY H    +  ++K +R +    +I++VF     R      ++   A  L
Sbjct: 319 F-YKGFPVYDDYGHHPTEIRSVIKAVREMYPDTKILLVFQP--HRYSRTYYLLQDFATVL 375

Query: 408 DLADIAIVTDDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             AD  IVTD  P  E+    + A+ +  I G I   ++ E +  A++ L    V++  G
Sbjct: 376 READSCIVTDIYPAGEENRWHVSAKQLAEISGCIYAPSK-EEVFQAVKRLADNHVILFMG 434

Query: 467 KGH 469
            G+
Sbjct: 435 AGN 437


>gi|256027425|ref|ZP_05441259.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. D11]
          Length = 460

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVL 268
           TN+  DH+D H       N K    + +   +  AII  D +     V K          
Sbjct: 173 TNIDADHLDVHGNLD---NIKKSFIKFICHTQKEAIICMDCENLRDAVSKLPEGKTVTTY 229

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+  +   I+ K +  +  K    + +  +   +F   +PGE  + N+L    L +  G+
Sbjct: 230 SIKDENANIYAKNIRIVDRKTIFELYINKELIGEFSLNIPGEHNILNSLPVIYLALKFGV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + E L        R++ +         G  ++  RI  DYAH    ++  LK I++
Sbjct: 290 SKEEIQETLHNFKGSKRRYDVLFDNDLENGYGNKTKRVRIIDDYAHHPTEIKATLKAIKS 349

Query: 379 ITSGRIIVVF 388
           I   R++V+F
Sbjct: 350 IDKSRLVVIF 359


>gi|209559647|ref|YP_002286119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540848|gb|ACI61424.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
          Length = 463

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 145/384 (37%), Gaps = 78/384 (20%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR I  G +F+ + G + DGH FI  A   GA A           FS      
Sbjct: 26  LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGL 142
            P L+V++  K     A     K   +++AVTG++GK+S       V S   +  +  G 
Sbjct: 75  KPHLLVEDCLKTFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   T+     D                         + +E     + Q  +  I
Sbjct: 135 YNNEIGLPYTVLHMPDDTE----------------------KIVLE-----MGQDHMGDI 167

Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250
           +L++          T +G  H++Y  ++      KM++ + +    S  I+ A      D
Sbjct: 168 RLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGM---NSDGILIAPGDPIID 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
            Y  E           V+  G Q +      V  I  +K  +T +          PLPG+
Sbjct: 225 PYLPE--------NQMVIRFGNQQEI----DVTGIQEDKDSLTFTTNVLATPVSLPLPGK 272

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
           +   NA+VAA +   + +    ++  L+ + +   R E+    + G  I  D Y     +
Sbjct: 273 YNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKA-ANGADILSDVYNANPTA 331

Query: 369 LEMILK---NIRTITSGRIIVVFG 389
           + +IL+   NI     G+ I V  
Sbjct: 332 MRLILETFANIAKNPGGKKIAVLA 355


>gi|307718045|ref|YP_003873577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
 gi|306531770|gb|ADN01304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
          Length = 459

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 108/288 (37%), Gaps = 48/288 (16%)

Query: 95  VDNTRKFLSLFASRLYGKHPEN------------ILAVTGTSGKSSVASFVQQICQRSGL 142
           V  T +FLSL       +H E             ILAVTG+ GKS+ AS +  I   +  
Sbjct: 86  VPRTSRFLSL------ARHVETDISLFLKACRSPILAVTGSKGKSTTASALHHILS-AAF 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              ++G   T S       L+  SP+ L  +   L   G                R+   
Sbjct: 139 PGARLGGNITTSPLTFLRELSEESPVVLELSSWQLGDLG---------------GRISFT 183

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH 261
             +A + TN+  DH + + + +AY   K  +     P ++   +Y A D + + +   A 
Sbjct: 184 PQVA-ALTNIYPDHQNAYASMEAYVEDKFWITATQDPSQT--FLYPASDPWGRWM---AA 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVA 318
           N     L   ++ +        A   +Q+      GK+   L     +PG     N L+A
Sbjct: 238 NTPATALPF-FEERPTSPPPRAAFLTEQEGLFLDHGKEIPLLPERLLVPGAHNRLNLLLA 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHT 365
             +    G D AL+   L     +P R E V    +GG   Y D A T
Sbjct: 297 GAMAYTFGTDPALIRTRLSSFPGIPHRLELV--REKGGVSFYNDSAAT 342


>gi|301800481|emb|CBW33120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae OXC141]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS 140
           +   +
Sbjct: 121 LLSTT 125


>gi|168486962|ref|ZP_02711470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570099|gb|EDT90627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS 140
           +   +
Sbjct: 121 LLSTT 125


>gi|94267893|ref|ZP_01291025.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [delta proteobacterium MLMS-1]
 gi|93451812|gb|EAT02562.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [delta proteobacterium MLMS-1]
          Length = 489

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 30/278 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           L V GT GK++ AS +     ++GL+  F IG    + +F + +RL    P ++++   Y
Sbjct: 126 LVVAGTHGKTTTASLLATALAQAGLAPGFMIG--GIVQAFGRSSRLGD-GPFFVSEGDEY 182

Query: 177 LSS---QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            ++   +G   +           H    I +I    T +  DH D +    A   A  RL
Sbjct: 183 DTAFFDKGPKFL-----------HYRPEIAII----TGVEFDHADIYPDLAAVKAAFARL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVT 292
              L+P     +   DD  + E+   A+   C VL  G +QG    L ++         T
Sbjct: 228 I-ALMPPHGALVACLDDPVTAELTTAAN---CPVLGYGEHQGLSWQLTELAISPGTTTFT 283

Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              EGK F  F   LPG     NAL    +   +G+ +  +   L     V  R E  G 
Sbjct: 284 ALKEGKPFGRFQSRLPGRHNALNALAVIAVLEQLGLGAEAIAGALAAFTGVRRRQEVRGE 343

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
            + G  +  D+AH   +    L+ ++    G R++ VF
Sbjct: 344 VA-GVTVIDDFAHHPTAARETLQALKAAYPGRRLLAVF 380


>gi|281413643|ref|ZP_06245385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 475

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 125/312 (40%), Gaps = 56/312 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS--LFASRLY---GK 112
           +P+     A+ +V S  +         R + P+L+  +   R   S    A RL    G+
Sbjct: 42  LPEVDGAAADLVVTSPGW---------RPDQPLLMAAHAAGRPIWSDVELAWRLRERAGR 92

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              + + +TGT+GK++  + V+ I +  G  +   G   T              P+  A 
Sbjct: 93  KTADWVCLTGTNGKTTTVTMVEAILRADGRRAVACGNVGT--------------PVLDA- 137

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  QG   +++E SS  L  H   G+   + +  NL  DH+D+H + + Y  AK +
Sbjct: 138 ---IRDPQGFDVLALELSSFQL--HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGK 192

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAI------ 285
           ++          +    D  ++ +++RA    GCR  ++G+      L  +  +      
Sbjct: 193 VYAN---TRVACVFNEQDPLTRTLVERADVQEGCR--AIGFTTDTPGLSDIGVVDGILVD 247

Query: 286 ----HNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                N++   I++ E  D   L P+     + NA  AA L  A+G+  A V E L    
Sbjct: 248 RAFLDNRRHEAIALAERAD---LGPVAPRHTMANAAAAAALTRAVGVSPAAVAEGLRSYD 304

Query: 341 VVPGRFEFVGTN 352
               R + V T+
Sbjct: 305 RGEHRIQLVATS 316


>gi|189502202|ref|YP_001957919.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497643|gb|ACE06190.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 450

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 45/256 (17%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLT 163
           FASR Y K   +++A+TG++GKS+       + +  GL+   +G    I +SFA+     
Sbjct: 95  FASR-YTK--ASLIAITGSNGKSTTTHLAYHLLKAGGLN---VGIAGNIGTSFARK---- 144

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L +   Y+         +E SS  L+   L   K       N+  DH+D +  Q
Sbjct: 145 ----VLLEEHNYYV---------LELSSFQLEH--LQTFKADIACILNITPDHLDRYDNQ 189

Query: 224 -QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFI 277
              Y  AK R+   ++ KE   I   DD   +E + +      ++  +      + G ++
Sbjct: 190 LNNYIAAKFRILRNMI-KEGYFIYNQDDTNIREYLVKQTTNLPQLYPISLTQSTHHGAYV 248

Query: 278 ---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              HL  V   +N Q  T ++         PL G+  +YN + A  +   +G+  A +L+
Sbjct: 249 ENNHLHFVGDNYNFQLPTQTL---------PLLGKHNIYNTMAAISIASLLGLSYASILD 299

Query: 335 HLEKLHVVPGRFEFVG 350
            L     +P R E++ 
Sbjct: 300 GLRTFKGLPHRMEWIA 315


>gi|322375679|ref|ZP_08050191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
 gi|321279387|gb|EFX56428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 149/393 (37%), Gaps = 72/393 (18%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F     + ++ +   DSR I  G +FV + G + DGH FI  A   GA   V  S
Sbjct: 16  NDVSLFA----DAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA--AVTLS 68

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              ++ +        P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 69  EKEVEGY--------PYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +   +       G  + +IG   T+     D                 +   G  H+   
Sbjct: 121 LLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG-- 165

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPA 244
                 D H L  +     +   L G  H+ + + +      KM++ + + P     +PA
Sbjct: 166 ------DIHLLSKLAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPDSLLLAPA 219

Query: 245 IIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDF 300
               +D     K+V++    A   V  +              I  K  +T      G+  
Sbjct: 220 DPIVEDYLPTDKKVVRFGQGADLEVTDL--------------IERKDSLTFKANFLGQAL 265

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+ G++   NA++AA + +  G+    + +  + L +   R E+    + G  I  
Sbjct: 266 D--LPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKA-ANGADILS 322

Query: 361 D-YAHTSNSLEMILKNIRTITS---GRIIVVFG 389
           D Y     ++++IL+    I +   G+ I V  
Sbjct: 323 DVYNANPTAMKLILETFSAILANEGGKKIAVLA 355


>gi|237743962|ref|ZP_04574443.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 7_1]
 gi|229432993|gb|EEO43205.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 7_1]
          Length = 468

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVL 268
           TN+  DH+D H       N K    + +   +  AII  D +     V K          
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIKFICHTQKEAIICMDCENLRDAVSKLPEGKTVTTY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+  +   I+ K +  +  K    + +  +   +F   +PGE  + N+L    L +  G+
Sbjct: 238 SIKDENANIYAKNIRIVDRKTIFELYINKELIGEFSLNIPGEHNILNSLPVIYLALKFGV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + E L        R++ +         G  ++  RI  DYAH    ++  LK I++
Sbjct: 298 SKEEIQETLHNFKGSKRRYDVLFDKDLENGYGNKTKRVRIIDDYAHHPTEIKATLKAIKS 357

Query: 379 ITSGRIIVVF 388
           I   R++V+F
Sbjct: 358 IDKSRLVVIF 367


>gi|225861498|ref|YP_002743007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727141|gb|ACO22992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389856|gb|EGE88201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|307127880|ref|YP_003879911.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
 gi|306484942|gb|ADM91811.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Coprococcus sp. ART55/1]
          Length = 455

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + ++  +S+  + G +FV I+G + DGH FI  A+ Q A A + S      +    + S+
Sbjct: 26  LTDICINSKEAKEGDLFVPIIGTRTDGHRFIESAL-QTAAATLTS------EHDNVVVSD 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + VD+T K L      +  ++   ++AVTG+ GK++    +      +G+  F 
Sbjct: 79  KAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSVGKTTTREMITAAVS-AGMKCFH 134


>gi|291515928|emb|CBK65138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes shahii WAL 8301]
          Length = 417

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 36/227 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT-- 90
           +S+D+R I+   IF A+ G+  DG+ F+ +A+ +GA       AY++ D      S+   
Sbjct: 14  ISTDTRRIEPDSIFFALRGDTFDGNRFVAEALEKGA-------AYAVSDDPQVAASDERQ 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+T K L   A          ILA++G++GK++    V ++        F++  T
Sbjct: 67  RIVLVDDTLKALQDLARCHRRALGIPILAISGSNGKTTTKELVSRVLA----ERFEVYAT 122

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206
                   +N +  P  +    A++  +  GV  +   A            + L+A    
Sbjct: 123 RG----NLNNHIGVPLTLL---AMTRDTEFGVVEMGASACGE---------LALLASVAE 166

Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              G  TN+G  H++     +     K  LF+ L      A + ADD
Sbjct: 167 PNYGILTNIGLAHLEGFGGPEGVRRGKGELFDFLAANGGHAFVPADD 213


>gi|260576888|ref|ZP_05844871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
 gi|259020925|gb|EEW24238.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
          Length = 466

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 100/260 (38%), Gaps = 37/260 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTG++GKS+  + +  I + +G       PT    +  +      P+          
Sbjct: 122 VVCVTGSNGKSTTTALIHHILEVAGR------PTQMAGNIGRGVLDIDPA---------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G   V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 166 --VDGEV-VVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHNGMGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHL-------KKVCAIHN 287
             P    A+I  D+   + +  +        RV+ +    K           K   A   
Sbjct: 221 GGPDR--AVIGVDEVEGRYLAGQLAEGAADDRVIRISSGTKLEEFAWSVFARKGFLAEWR 278

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +   S+   D   +  LPG     NA  A   C ++G+   L+ +       +P R +
Sbjct: 279 RGKQVASI---DLRGVAGLPGAHNHQNACAAYAACRSLGVGPKLIEQAFHSFAGLPHRSQ 335

Query: 348 FVGTNSRGGRIYVDYAHTSN 367
            VG   + G  +V+ +  +N
Sbjct: 336 TVG--EKAGVRFVNDSKATN 353


>gi|219681589|ref|YP_002467975.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682147|ref|YP_002468531.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471275|ref|ZP_05635274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|254766040|sp|B8D916|MURD_BUCA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766041|sp|B8D7C1|MURD_BUCAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219621880|gb|ACL30036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624432|gb|ACL30587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311085959|gb|ADP66041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086534|gb|ADP66615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087114|gb|ADP67194.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087659|gb|ADP67738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 121/302 (40%), Gaps = 61/302 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GKS+VA+ +++I ++SG  +F  G             +  P        L  
Sbjct: 108 IISITGTNGKSTVATMIEKIAKKSGYKAFLGG------------NIGVP-------VLEI 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   ++ +E SS  L+      +K       N+  DHI+ Y    Q Y N K+ ++ 
Sbjct: 149 LDKEADLYI-IELSSFQLENTF--NLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYN 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +        II ++D   K ++   H+   + +S G               N+    I  
Sbjct: 206 Q----AEICIINSNDKIEKSLI---HSKNKKWISFG--------------TNRSDYRICS 244

Query: 296 EGKDFDFLFP-----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +  D    F            L G     N LV+  +  A+       +  L+    +P 
Sbjct: 245 KSNDPILFFKNKKILNTSEILLYGYHNYNNILVSLAISDAMQFPRNDAINVLKSFSNLPH 304

Query: 345 RFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           RF+ +  N +G R   D   T+ NS ++ L +I+T  + R+++    GGD       I+ 
Sbjct: 305 RFQII-KNEKGVRWINDSKSTNVNSTQVALNSIKTTGTIRLLL----GGDSKSANFNILK 359

Query: 404 KI 405
            I
Sbjct: 360 NI 361


>gi|294101816|ref|YP_003553674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616796|gb|ADE56950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 132/332 (39%), Gaps = 43/332 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVSS  S Q           I V+      +   A  + GK    ++ VTG++GKS
Sbjct: 72  ADCIVVSSGISPQASVVKKAQGRGIPVIGE----IDFVAPHIKGK----VIGVTGSNGKS 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  + ++ G  +   G                     +   LS  +SQ +  + +
Sbjct: 124 TTTMLIGHLLKKYGYKTAVAG--------------------NIGNPLSLHASQNLDFIVI 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L    L  +K      TNL  DHID+H +   Y  AK RL     P    A++ 
Sbjct: 164 ELSSFQLYWAHL--LKSHVAIVTNLAPDHIDWHGSFTNYLKAKARLVRLQEPGHW-AVVQ 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304
             D  + ++  ++      V S+ ++G+  +H         +Q+  +S   K+  F +  
Sbjct: 221 NRDVDALQLSGKS-----AVASLYWEGQEPVHKTDAYICMGEQEAWLSYNKKELLFDYRD 275

Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   + N  + A   I  G+  + + + L     +P R  FV   +  G  Y+D +
Sbjct: 276 VDLIGRHNLENLAMTASALILGGVPCSNLTKQLSDFIPLPHRCTFVAEIN--GVRYIDDS 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             +N +      + +I   +++++ G G   D
Sbjct: 334 KGTN-VAASATALTSIHGPKVVILGGQGKGED 364


>gi|149021236|ref|ZP_01835482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|147930337|gb|EDK81321.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|145630232|ref|ZP_01786014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Haemophilus influenzae R3021]
 gi|144984513|gb|EDJ91936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Haemophilus influenzae R3021]
          Length = 105

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 10/84 (11%)

Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
          + PEL N + +  M            DSR ++AG +FVAI G++ DG+ FI  A+  GA 
Sbjct: 9  NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58

Query: 70 AIVVSSAYSLQDFSATIRSNTPIL 93
          A+V  +  S +  +     N P++
Sbjct: 59 AVVSETELSSEHLTVAFIRNVPVV 82


>gi|110598577|ref|ZP_01386845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339811|gb|EAT58318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 465

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 127/311 (40%), Gaps = 56/311 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGL----SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           ++ +TGT GK++ A+ + +IC+  GL     +F +G                   I  + 
Sbjct: 107 VVGITGTDGKTTTATLIHRICEADGLLHNYRAFSVGNIG----------------IPFSS 150

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-DYHQTQQAYFNAKM 231
            +  +  + V    VE SS+ L+  R    +      TN+  DH+  Y      Y  AK 
Sbjct: 151 MVLEMHPRDVA--VVELSSYQLE--RCVAFRPDIAVITNITPDHLARYEGDMHRYAAAKF 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----------- 280
           R+++     E   +IY DD    + +  AH A   V S  +  + +  +           
Sbjct: 207 RIYQN--QGERDTLIYNDD----DPLLTAHFA---VDSARFPFQIVPFRMDQRAAHGSGR 257

Query: 281 KVCAIHNKQQVTISVEGKDF-----DFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +  + N + V  +V G++      DFL     G   +YN L A  +   +GI+S +V +
Sbjct: 258 SMVFLDNDRVVFRTVSGEETVVATADFLKESFRGRHNIYNVLAAVAVSKVLGIESGVVRD 317

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L     V  R EFV T +  G I    A   N++   L++      G+++++ G G D+
Sbjct: 318 VLSDFTGVEHRQEFVMTINGSGWINDSKATNLNAMRQALES----APGKVVLIAG-GQDK 372

Query: 395 DQGKRPIMGKI 405
                 I G +
Sbjct: 373 GNDYATIAGLV 383


>gi|194336194|ref|YP_002017988.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308671|gb|ACF43371.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
          Length = 493

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 22/186 (11%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH D   + +       RLF  L+P     ++  DD  + EV  RA    CRV   
Sbjct: 206 NIEFDHADIFDSLED-IKRSFRLFVNLIPGNGTLLVNGDDKVALEVASRAF---CRVERF 261

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAG 320
           G   +        +  +   ++   E   FD L+          PL G + + N+L A  
Sbjct: 262 GLTRE--------SEWSACNLSADSEASTFDLLYQGTLLGSIRIPLFGNYNIMNSLAAIA 313

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+    ++  +        R E VGT +    +  D+AH   ++ + L+ +  + 
Sbjct: 314 AATHSGLSVEAIIRAMPLFKRPKRRMEIVGTYAHNITLVEDFAHHPTAIRVTLEALGELY 373

Query: 381 SGRIIV 386
           +GR I+
Sbjct: 374 TGRRII 379


>gi|238650901|ref|YP_002916757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
 gi|238624999|gb|ACR47705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
          Length = 500

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 38/147 (25%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I   SGL     G                             
Sbjct: 107 IAITGTNGKSTTTALISHILNSSGLDYPVAGNI--------------------------- 139

Query: 178 SSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAK 230
              GV+ +  +AS  G    L   +LD +K          N+  DH+D HQ    Y  AK
Sbjct: 140 ---GVSALQAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMPCYIAAK 196

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVM 257
            ++F+  + +ES A+I  D+ Y +EV 
Sbjct: 197 SKIFDR-MDQESYAVINIDNDYCREVF 222


>gi|168493571|ref|ZP_02717714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576262|gb|EDT96790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|332199699|gb|EGJ13774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|127514383|ref|YP_001095580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
 gi|126639678|gb|ABO25321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
          Length = 443

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 115/300 (38%), Gaps = 43/300 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS    L         +  I +V +   F    A R     P  ++ +TG++GKS
Sbjct: 67  ASQIVVSPGIPLDTAEVRAAVDMGIDIVGDVELFARALADR-----PACVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++  ++GL              A    +  P        L  L       V +
Sbjct: 122 TVTTLVGEMAAKAGLK------------VAVGGNIGVP-------VLDLLDGDHELFV-L 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I+ +  N+  DH+D +   ++Y  AK+RL+++       AI  
Sbjct: 162 ELSSFQLETTS--SLNCISATCLNISEDHMDRYSDLESYRQAKLRLYDQ----TKLAIFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  ++       N+    L  G +    H      +H   +     +         L 
Sbjct: 216 RDDLLTRPNEPMNQNSFGLSLPEGDEWGVNH---GVLVHGTTEYVAGAQ-------VSLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N LVA  L  + G+D A ++E  ++   +  R E VG +   G  YV+ +  +N
Sbjct: 266 GSHNQANLLVAMALADSAGVDKAAMVEVAKQFKGLAHRCELVGKHQ--GVSYVNDSKATN 323


>gi|71279923|ref|YP_271117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
 gi|71145663|gb|AAZ26136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
          Length = 513

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 11/119 (9%)

Query: 27  ERKINEVSSDSR----HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E  I+++  DSR    H      F+A+ G   DGH F  Q I QG + ++V       D 
Sbjct: 30  ELVIDDLVIDSRAIKEHSDKCSAFLALKGPNFDGHRFAEQVIKQGCQLLIV-------DH 82

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             +  ++T  L+V +TR  L   A+ +  +     + +TG+SGK++V   V  I  R G
Sbjct: 83  HLSAVTDTAQLIVSDTRIALGKIAAFVKKEVAPKTVGITGSSGKTTVKEMVAAILSRLG 141


>gi|15675337|ref|NP_269511.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71903813|ref|YP_280616.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71910970|ref|YP_282520.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
 gi|13622518|gb|AAK34232.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71802908|gb|AAX72261.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71853752|gb|AAZ51775.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
          Length = 463

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 145/384 (37%), Gaps = 78/384 (20%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR I  G +F+ + G + DGH FI  A   GA A           FS      
Sbjct: 26  LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGL 142
            P L+V++  K     A     K   +++AVTG++GK+S       V S   +  +  G 
Sbjct: 75  KPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   T+     D                         + +E     + Q  +  I
Sbjct: 135 YNNEIGLPYTVLHMPDDTE----------------------KIVLE-----MGQDHMGDI 167

Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250
           +L++          T +G  H++Y  ++      KM++ + +    S  I+ A      D
Sbjct: 168 RLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGM---NSDGILIAPGDPIID 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
            Y  E           V+  G Q +      V  I  +K  +T +          PLPG+
Sbjct: 225 PYLPE--------NQMVIRFGNQQEI----DVTGIQEDKDSLTFTTNVLATPVSLPLPGK 272

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
           +   NA+VAA +   + +    ++  L+ + +   R E+    + G  I  D Y     +
Sbjct: 273 YNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKA-ANGADILSDVYNANPTA 331

Query: 369 LEMILK---NIRTITSGRIIVVFG 389
           + +IL+   NI     G+ I V  
Sbjct: 332 MRLILETFANIAKNPGGKKIAVLA 355


>gi|298293101|ref|YP_003695040.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Starkeya novella
           DSM 506]
 gi|296929612|gb|ADH90421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Starkeya novella
           DSM 506]
          Length = 460

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 23/163 (14%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           RL  +HP    A+TGT+GKS+  + +  + +  G  + QIG     +       L  P P
Sbjct: 108 RLAPRHPP-FAAITGTNGKSTTTALLAHLMKVGGRDA-QIGGNFGPAILG----LEPPKP 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                        G  +V +E SS+ +D      +    G   NL  DH+D H T + Y 
Sbjct: 162 -------------GRVYV-IECSSYQIDLA--PSLDPAVGILLNLSPDHLDRHGTMEHYA 205

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
             K RL  ++    + A+I  DD +S+ +  R   AG  V+ +
Sbjct: 206 AVKERLVAQVEAGGT-AVIGVDDEWSRAIADRVEAAGRNVVRI 247


>gi|289765388|ref|ZP_06524766.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D11]
 gi|289716943|gb|EFD80955.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D11]
          Length = 468

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVL 268
           TN+  DH+D H       N K    + +   +  AII  D +     V K          
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIKFICHTQKEAIICMDCENLRDAVSKLPEGKTVTTY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+  +   I+ K +  +  K    + +  +   +F   +PGE  + N+L    L +  G+
Sbjct: 238 SIKDENANIYAKNIRIVDRKTIFELYINKELIGEFSLNIPGEHNILNSLPVIYLALKFGV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + E L        R++ +         G  ++  RI  DYAH    ++  LK I++
Sbjct: 298 SKEEIQETLHNFKGSKRRYDVLFDNDLENGYGNKTKRVRIIDDYAHHPTEIKATLKAIKS 357

Query: 379 ITSGRIIVVF 388
           I   R++V+F
Sbjct: 358 IDKSRLVVIF 367


>gi|167622396|ref|YP_001672690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella halifaxensis
           HAW-EB4]
 gi|189082499|sp|B0TQN8|MURC_SHEHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167352418|gb|ABZ75031.1| UDP-N-acetylmuramate--alanine ligase [Shewanella halifaxensis
           HAW-EB4]
          Length = 489

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 127/326 (38%), Gaps = 54/326 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + +VVS+A S  +          I VV        L   R       + +AV GT G
Sbjct: 79  KGMDVVVVSTAISADNPELVAAKELRIPVVRRAEMLAELMRYR-------HGVAVAGTHG 131

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S +  I   +    +F IG    ++S   + RL   S   +A+A     S+L  Q
Sbjct: 132 KTTTTSLIASIYGEAERDPTFVIG--GLLNSAGTNARLGH-SRYLIAEADESDASFLHLQ 188

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D ++            F   LP 
Sbjct: 189 PMVSV-----------------------VTNIEADHMDTYEGDLEKLKTTFVDFLHNLPF 225

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISV 295
              A++  DD   +E++ R    G R+++ G+         V A+  KQ     + T+  
Sbjct: 226 YGVAVVCIDDPIVRELIPRI---GRRIVTYGFSDD----ADVQALDFKQTGYSCEFTVKR 278

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
            G  D      LPGE  V NAL A  +     I+ A +++ L +   +  RF+ +G    
Sbjct: 279 AGLADLRLSVNLPGEHNVLNALAAIAVATEDDIEDAAIIKALAEFQGIGRRFQQIGEFAT 338

Query: 353 SRGG-RIYVDYAHTSNSLEMILKNIR 377
           S+G  ++  DY H  + +   +K  R
Sbjct: 339 SKGEIKLVDDYGHHPSEVAATIKAAR 364


>gi|148977787|ref|ZP_01814343.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
 gi|145963001|gb|EDK28271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
          Length = 452

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 118/284 (41%), Gaps = 35/284 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G +  F +G    + +F+   RL   S  ++ 
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFLVG--GVLGNFSISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----K 201

Query: 232 RLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIH 286
           R F  L+   P          D   ++V+ R    GC     S G  G +   KK+  + 
Sbjct: 202 RQFHHLVRTVPGNGRIFSPKQDTAIQDVLSR----GCWSDAESSGEAGDW-DAKKL--VK 254

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +  Q  +  +G+     ++ L G+  V NAL+A      +G+   L  E L K      R
Sbjct: 255 DGSQFEVYFQGECVGTVVWDLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRR 314

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            EF G  + G  +Y D+AH   ++E+ L  +R  + S +II V 
Sbjct: 315 LEFKGEVA-GVSVYDDFAHHPTAIELTLGGLRNKVDSKKIIAVL 357


>gi|15903557|ref|NP_359107.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116515757|ref|YP_816939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
 gi|15459176|gb|AAL00318.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116076333|gb|ABJ54053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|89074169|ref|ZP_01160668.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
 gi|89050105|gb|EAR55631.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
          Length = 487

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 138/339 (40%), Gaps = 57/339 (16%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGA  +V S+A S +  +  A   S  PI+      +   + A  +  +H    +A+ GT
Sbjct: 80  QGASVVVASTAISKENPELVAATESRIPIV------RRAEMLAELMRYRHG---IAIAGT 130

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  +   QI   +GL  +F  G    + S   + RL   S   +A+A     S+L 
Sbjct: 131 HGKTTTTALTTQIYSEAGLDPTFVNG--GLVKSAGTNARLGC-SRYLIAEADESDASFLH 187

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLF 234
            Q +  V     +  +D +         G F  L +  ID+      Y  A M     + 
Sbjct: 188 LQPMVCVVTNIEADHMDTY--------GGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVV 239

Query: 235 EELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            ELLP+   P I Y    ++++   R  N        G+QG F  L+K     +K  + I
Sbjct: 240 RELLPRVGRPMITY---GFAEDADVRITN----YTQTGHQGHFTVLRK-----DKPALNI 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++           PG+    NA  A  +    G+D   ++  L +      RF+ +G   
Sbjct: 288 TLN---------TPGKHNALNATAAIAVATEEGVDDEAIMRALIEFEGTGRRFDHLGEFE 338

Query: 354 RG-GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            G G + +  DY H  + +++ ++  R      R++++F
Sbjct: 339 TGNGNVMLVDDYGHHPSEVDVTIQAARAGWADKRLVMIF 377


>gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium cylindroides T2-87]
          Length = 453

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 132/328 (40%), Gaps = 45/328 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V  DSR I    +++ ++G + DGH FI   I +G +A +       +D +      
Sbjct: 26  IQGVGIDSRQITENALYIPLIGQRADGHTFIDSVIQKGVKATLWQ-----KDHTPYPEDI 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           T IL VD+T + L   A          ++ VTG++GK+S        C+    S F    
Sbjct: 81  TCIL-VDDTLEALQNLAKAYLNTLSCLVIGVTGSNGKTS--------CKDMLYSIFSQEK 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA-- 206
            +  +   ++N +  P        L+ L       V V     G++    +D +  IA  
Sbjct: 132 KTQKTQGNRNNEIGLP--------LTVLDLD--KDVEVAILEMGMENKGEIDFLTHIARP 181

Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEVM 257
                T +G  H++    ++    AK+ + E L P       KESP I        + ++
Sbjct: 182 DVSIITTIGSAHMENLGGKKQIAQAKLEILENLKPGGLFLYDKESPEI-------QECLL 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +   +   R++S G+ G    +  +    N  +   S    D   L  L G+FQ  NAL 
Sbjct: 235 EMDIDPSKRLVSFGFNGDISIISSIDYTENGIEFYCS-SLTDKITLNAL-GDFQAKNALP 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              + +   I ++ +L+ L+ L +   R
Sbjct: 293 CIYVALDQKISTSSILKGLKDLEMTKMR 320


>gi|257464232|ref|ZP_05628611.1| dihydrofolate synthase [Fusobacterium sp. D12]
          Length = 409

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 147/358 (41%), Gaps = 71/358 (19%)

Query: 113 HPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT------ 163
           HPE    I+ + GT+GK S  + +++I   +G   +++G  ++      + R+       
Sbjct: 28  HPERAYKIIHIAGTNGKGSTTTTLEKILLEAG---YRVGKYTSPHILKFNERIVANGVQI 84

Query: 164 -----------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                                  T   I  A   SY   +G+ +V +E    G    RLD
Sbjct: 85  SEEEIEYYYYQVEKIMKEEKIDATFFEITTAMMFSYFRDKGLDYVVLETGMGG----RLD 140

Query: 201 GIKL---IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
              +   I    TN+  DH +Y      Y  AK +     + K  P +I AD    +E +
Sbjct: 141 ATNVSEAILCIITNVSLDHTEY-LGDSIYKIAKEKAG---IIKNCPKVIVADQ--QEEFL 194

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHN----KQQVT-ISVEGKDFDFLFPLPGEFQV 312
           +        +++V        L K    H     +  VT I +EGK + F   L G++Q 
Sbjct: 195 QAILEEKAELINV--------LNKYADAHYTLDFENFVTHIDIEGKQYRF--SLFGDYQY 244

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           +N L A      +GI   ++ +  EK+     RFE V   S+   + +D AH  + +  +
Sbjct: 245 HNFLCAYEAAKQLGISEDIIQKAAEKVR-WECRFEVV---SKEPLVILDGAHNPDGVREL 300

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428
           +K ++     R + +      RD+  + ++ ++  +++D  ++T  DDNPR    E++
Sbjct: 301 VKIVKQHYQKREVAIL-TSILRDKDVKTML-EMMTEISDDILLTSLDDNPRGSTAEEL 356


>gi|227874167|ref|ZP_03992371.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
 gi|227839988|gb|EEJ50414.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
          Length = 466

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 135/348 (38%), Gaps = 60/348 (17%)

Query: 58  LFIPQA---IAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           +F+PQ+   I  G E  V ++A S   ++F    R   P++    TR       + L G+
Sbjct: 57  VFVPQSRQNIQDGVELCVYTAAISEDNEEFQEVKRRGIPMM----TR-------ADLLGR 105

Query: 113 HPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPS 166
             +N    + V GT GK++  S + +I   +        PT T+    +D   N     S
Sbjct: 106 IMQNYATAINVAGTHGKTTTTSMIGEILMEAAKD-----PTITVGGMMKDIGGNLRVGQS 160

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            I+LA+A  Y +S      S+                       N+  DH+D+ +     
Sbjct: 161 DIFLAEACEYTNSFHSFFPSIAV-------------------ILNVEADHLDFFKDINEI 201

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKK 281
            ++  + F E LP++   +I  D  + +  ++     G ++++ G     Y   FI    
Sbjct: 202 RDS-FKTFIERLPEDGLVVINKDIPHYEYFLEDL--GGRKIITFGHGDADYTANFISYDH 258

Query: 282 VCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                 +   T+   G+D       + GE  +YN+L A  +   +GI    + E L +  
Sbjct: 259 YA----RPSFTLFEHGEDRGKVTLSVTGEHNIYNSLSAIAVARYLGISFEDIKEALHRFS 314

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               RF+  G    G  I  DYAH    +   +   +     ++ +VF
Sbjct: 315 GTDRRFQRKG-KINGFTIIDDYAHHPQEIAATIAAAQKYPHRKLWIVF 361


>gi|153815035|ref|ZP_01967703.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
 gi|145847603|gb|EDK24521.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
          Length = 458

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 118/316 (37%), Gaps = 38/316 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A I  N P L+     K   L  + L G+  +N    +AV+GT GK++  S +  I  
Sbjct: 75  YTAAINRNNPELIEAVALKIPMLTRAELLGQLMKNYDTPIAVSGTHGKTTTTSMISHILL 134

Query: 139 RSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              L      PT ++    +    N     S  ++ +A  Y +S                
Sbjct: 135 EGDLD-----PTISVGGILKAIGGNIRVGNSGTFITEACEYTNSF--------------- 174

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            H    I +I     N+  DH+D+ +  +         F ELLP++   II A+     E
Sbjct: 175 LHFFPKISVIL----NIEEDHLDFFKDLED-IRHSFHQFAELLPEDGTLIINAEIKDYAE 229

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFL-FPLPGEFQV 312
           + +      C V++ G  G F +  K         V   +   G+  D +   + G+  V
Sbjct: 230 IYE---GLSCNVVTYGTNGCFDYSAKNITYDENGHVAFDLFRRGEYADHIQLSVTGDHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  +   +G+   +    L        RFE+ G    G  +  DYAH    +   
Sbjct: 287 SNALSAIAVADILGLSIDITKRGLLSFTGTDRRFEYKG-EFNGVTVIDDYAHHPTEILAT 345

Query: 373 LKNIRTITSGRIIVVF 388
           LK  +      +  VF
Sbjct: 346 LKAAQHSLHNSVWCVF 361


>gi|315633813|ref|ZP_07889102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477063|gb|EFU67806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 459

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+DSR      +F A+ G   D H ++ +A  QG  A VV               N
Sbjct: 25  VENVSTDSRKAVNNGLFFALKGENFDAHDYVMKAAEQGCVAAVVEHP---------TEGN 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              L+V ++R  L   A  L  K    ++A+TG+SGK++V      I Q+  +
Sbjct: 76  IAQLIVKDSRLALGQLAKWLREKINPKVVAMTGSSGKTTVKEMTASILQQCAV 128


>gi|257092207|ref|YP_003165848.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044731|gb|ACV33919.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 462

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 133/333 (39%), Gaps = 53/333 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
            GA+A+VVSSA         +R++ P ++   +R+   +  +++  +    +  +AV GT
Sbjct: 63  NGADAVVVSSA---------VRADNPEVIAARSRQVPVVPRAQMLAELMRLKQGIAVAGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  I    G+      PT     F    RL        A A + L S    
Sbjct: 114 HGKTTTTSLVASILAAGGMD-----PT-----FVIGGRLNA------AGANACLGSGDFL 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELL 238
               + S    D   L  +  +    TN+  DH+     D+++ +QA+       F + L
Sbjct: 158 VAEADES----DASFLF-LSPVISVVTNIDADHMETYGHDFNRLKQAFVE-----FLQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV-TISVE 296
           P    A++ ADDA  +E+M +      ++++ G       + + V A   + +   + V 
Sbjct: 208 PFYGVAVLCADDANVREIMPQVSK---QIVTYGLDPAANFYAENVTAEGGQMRFDCVRVN 264

Query: 297 GK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
           G          LPG   V NAL A  +   +G+    +L+ L     V  RF+  G    
Sbjct: 265 GSVSRLPVTLNLPGRHNVLNALAAIAVASEVGVADDAILKALTDFRGVGRRFQRYGEIAL 324

Query: 353 SRGGRIYV--DYAHTSNSLEMILKNIRTITSGR 383
           + GG   +  DY H    +   L   R    GR
Sbjct: 325 ADGGCFTLVDDYGHHPVEMSATLTAARGAFPGR 357


>gi|15901505|ref|NP_346109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658550|ref|ZP_01409213.1| hypothetical protein SpneT_02000306 [Streptococcus pneumoniae
           TIGR4]
 gi|14973162|gb|AAK75749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|332201095|gb|EGJ15166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|32490957|ref|NP_871211.1| hypothetical protein WGLp208 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316007|sp|Q8D2Z4|MURD_WIGBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25166163|dbj|BAC24354.1| murD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 438

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 117/288 (40%), Gaps = 51/288 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I++S   SL   S  I     I ++ +    + LFA       P  I+A+TG++GKS
Sbjct: 66  AKLIIISPGVSLYHPSLIIAKKLNIEIIGD----IELFARE--ASRP--IIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S +  I   SGL S  IG             L TP       AL  L+ +      +
Sbjct: 118 TVTSMIGAIALNSGL-SVGIG-----------GNLGTP-------ALDLLNEKSYQLYII 158

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K IA S  N+  DH+D Y      Y   K+++++    K    II
Sbjct: 159 ELSSFQLETTF--NLKTIASSILNVTHDHMDRYPLGINQYRLIKLKIYKNAKVK----II 212

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304
             DD  +  V K       + + +G+     H  K C   +K+   + V  K   FL   
Sbjct: 213 NLDDYMTWPVHKN------KSVCIGFSS---HKGKYCIKKHKKNNWMVVNNK---FLLKC 260

Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               + G     NALV+      + I   + L  L+    +P RF+ +
Sbjct: 261 SEMKISGFHNYLNALVSLIFSDILKIPREISLNTLKNFSGLPHRFQII 308


>gi|312173524|emb|CBX81778.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 438

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ Q +G   +Q+G    I        L  P+ +Y+      
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAQAAG---WQVGVGGNI-GLPVLTLLQQPAQLYV------ 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  L+  R   +   A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 157 ----------LELSSFQLETTR--SLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                 +  ++ ADDA +  V      A  R LS G      HL +
Sbjct: 205 ----NATVCVVNADDAMTIPV----RGADARCLSFGADVGDYHLTR 242


>gi|168488616|ref|ZP_02712815.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|221232407|ref|YP_002511560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855100|ref|YP_002736612.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298230135|ref|ZP_06963816.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254426|ref|ZP_06978012.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503414|ref|YP_003725354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|183572707|gb|EDT93235.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|220674868|emb|CAR69443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722486|gb|ACO18339.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298239009|gb|ADI70140.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|332072499|gb|EGI82982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17570]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|149001954|ref|ZP_01826908.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
 gi|147759763|gb|EDK66753.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|157828435|ref|YP_001494677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933147|ref|YP_001649936.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. Iowa]
 gi|157800916|gb|ABV76169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908234|gb|ABY72530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           rickettsii str. Iowa]
          Length = 500

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 38/147 (25%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I   SGL     G                             
Sbjct: 107 IAITGTNGKSTTTALISHILNSSGLDYPVAGNI--------------------------- 139

Query: 178 SSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAK 230
              GV+ +  +AS  G    L   +LD +K          N+  DH+D HQ    Y  AK
Sbjct: 140 ---GVSALQAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMPCYIAAK 196

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVM 257
            ++F+  + +ES A+I  D+ Y +EV 
Sbjct: 197 SKIFDR-MDQESYAVINIDNDYCREVF 222


>gi|292489359|ref|YP_003532246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
 gi|292898417|ref|YP_003537786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291198265|emb|CBJ45371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291554793|emb|CBA22618.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
          Length = 438

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ Q +G   +Q+G    I        L  P+ +Y+      
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAQAAG---WQVGVGGNI-GLPVLTLLQQPAQLYV------ 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  L+  R   +   A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 157 ----------LELSSFQLETTR--SLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                 +  ++ ADDA +  V      A  R LS G      HL +
Sbjct: 205 ----NATVCVVNADDAMTIPV----RGADARCLSFGADVGDYHLTR 242


>gi|302878822|ref|YP_003847386.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
 gi|302581611|gb|ADL55622.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
          Length = 856

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 137/347 (39%), Gaps = 55/347 (15%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +F +   G+ P  ++AV GT+GK++    +  I    G    ++G T++   + Q  R+ 
Sbjct: 461 MFEAGNDGRIP--LVAVAGTNGKTTTVRLISHIL---GCQGLRVGMTNSDGVYIQGKRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DYH 220
           T        A + L    V     E +  G+ +  L   +      TN+G  DH+  +Y 
Sbjct: 516 TGDCSGPKSARNVLLHPDVDAAVFETARGGVLREGLAFDRCNVAVVTNIGMGDHLGLNYI 575

Query: 221 QTQQ------------------AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            T +                  A  NA   +   +      ++ +     S  VM     
Sbjct: 576 STVEDLSVVKRVVVQNVALSGVAVLNAADPMSAAMADICPGSVTFFAQDRSHPVMAAHRA 635

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFLFPLPGE----FQVYNAL 316
            G RV+       ++   +V A  N  +Q+V +S          P+       FQ+ NA+
Sbjct: 636 QGKRVV-------YVEGNQVVACENTFEQRVELS--------HIPITRNGVIGFQIENAM 680

Query: 317 VAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            +     A+G+D   +   L          PGRF F   + RG  +  DY H  +++  +
Sbjct: 681 ASIAAVWALGVDWDTIRRGLASFVNDAATAPGRFNFF--DYRGASVIADYGHNPDAILAL 738

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +  ++ + +  R++V+ G G  RD+  R +  +I  D+ D  I+  D
Sbjct: 739 ISAVQNMPAKKRMVVISGAGDRRDEDIR-LQTEILGDVFDEVILYQD 784


>gi|212702355|ref|ZP_03310483.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
 gi|212674233|gb|EEB34716.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
          Length = 436

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 101/264 (38%), Gaps = 54/264 (20%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E +LAVTGTSGK++  S    + +  GL  F  G             + TP   YL    
Sbjct: 121 EPVLAVTGTSGKTTTVSLAAAMLREQGLRVFLGG------------NIGTPLSEYL---- 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             LS +    + +E SS  L                N+  +H+DYH+  + Y  AK RLF
Sbjct: 165 --LSGEKADVLVLETSSFQL--QCCSTFHPRVAVVLNISPNHLDYHKDMEEYIEAKFRLF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +E  A++      + E+ + A   G R                      ++V I 
Sbjct: 221 -RCQTEEDLAVL------APELEETAARFGLRA---------------------RKVWIR 252

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            EG+  D   PL G+   +NA  A   C   G+        +     +P R E V     
Sbjct: 253 PEGRFPD--CPLFGQHNQFNAEAAWQACRPFGVTLENAARAVAAFKPLPNRLESVARVH- 309

Query: 355 GGRIYVDYAHTSN--SLEMILKNI 376
            G +YV+ +  +   +LE+ L+ +
Sbjct: 310 -GVLYVNDSKCTTVAALEVALEAM 332


>gi|148993758|ref|ZP_01823185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|147927714|gb|EDK78738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|304413639|ref|ZP_07395083.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
 gi|304283730|gb|EFL92124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
          Length = 521

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 159/403 (39%), Gaps = 81/403 (20%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI------------------ 71
           + +V  DSR +  G +FVA+ G + DGH F  +AI  GA A+                  
Sbjct: 29  VTQVVIDSRKLSTGCLFVALKGARFDGHDFAEEAITAGAIALLVNKIAMNKQQVDPSLYP 88

Query: 72  --------------------VVSSAYSLQDFSAT---------IRSNTPILVVDNTRKFL 102
                               V+  A +  + +A+         +    P LVV +TR  L
Sbjct: 89  SPLKLPFGCQGDRPMSVDNYVIRRAPAANNATASKAKGISLKSVPLPIPQLVVQDTRLAL 148

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              AS L  +    ++AVTG+SGK+SV      I  R   +  +       +S  Q+N +
Sbjct: 149 GQLASWLRQQVSARVVAVTGSSGKTSVKEMTAAIL-RQCKTPTKKNSHVLYTSGNQNNDI 207

Query: 163 TTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             P + + L     ++  + G  H+   A S GL   R + + +      NL   H++  
Sbjct: 208 GVPLTLLRLTAEHDFVVIELGANHLGEIAYSAGLS--RPESVLV-----NNLAAAHLEGF 260

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRAHNAGCRVLSVG 271
            +  A   AK  +F  +LP +  AII AD             + V + A NAG  +    
Sbjct: 261 GSLAAVAQAKGEIF-SVLPPQGYAIINADSHDWPHWQGMLSQQRVWRFAFNAGDGIDFFA 319

Query: 272 YQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              K         +H+    V IS+          L G   V NAL AA L +++G D  
Sbjct: 320 SDIKVDSQTTRFILHSPLGSVEISLS---------LLGRHNVANALAAAALAMSVGADLE 370

Query: 331 LVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            + + L + H  PGR F  +      G++ +D ++ +N   MI
Sbjct: 371 AIAKGLAQSHATPGRLFPILLAE---GKLLLDDSYNANVGSMI 410


>gi|237650676|ref|ZP_04524928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822434|ref|ZP_04598279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|332074005|gb|EGI84483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|159044992|ref|YP_001533786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Dinoroseobacter shibae DFL 12]
 gi|189082879|sp|A8LS92|MURD_DINSH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157912752|gb|ABV94185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dinoroseobacter
           shibae DFL 12]
          Length = 464

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 103/259 (39%), Gaps = 36/259 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+ ++ +  +   +G       PT    +  +      P           
Sbjct: 122 VIAVTGSNGKSTTSALIHHVLTAAGR------PTQLAGNIGRGVLDIDPG---------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G+  V +E SS+  +  R   +      FTNL  DH+D H     YF AK RLF  
Sbjct: 166 -EDGGI--VVLELSSYQTELAR--ALTPDIAVFTNLSPDHLDRHGGMGGYFAAKRRLFTI 220

Query: 237 LLPKESPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNK 288
             P    A+I  D+       S+  +  A +   RV S    G    +   K   A H K
Sbjct: 221 GGPDR--AVIGTDEPEGLFLASQLSVAPADDRVIRVTSAKPSGPGWVVSARKGFLAEHRK 278

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            + T S+   D   +  LPG     NA  A   C ++G+    +         +P R + 
Sbjct: 279 GRQTGSI---DLRPIPGLPGAHNHQNAACAYAACRSLGLAPRQIEAGFASFKGLPHRSQI 335

Query: 349 VGTNSRGGRIYVDYAHTSN 367
           VGT +  G  +V+ +  +N
Sbjct: 336 VGTAN--GVTFVNDSKATN 352


>gi|92116836|ref|YP_576565.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter hamburgensis
           X14]
 gi|122418259|sp|Q1QNU2|MURC_NITHX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91799730|gb|ABE62105.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter hamburgensis
           X14]
          Length = 467

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 130/338 (38%), Gaps = 58/338 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+ +VVS+A         IR + P L+    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GADVLVVSTA---------IRRDNPELMAARAQRIPVVRRAEMLAELMRLKSCVAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S V  +     L +    PT      I+++  + RL                  
Sbjct: 117 GKTTTTSMVAAL-----LDAGDFDPTVINGGIINAYGTNARL----------------GA 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G   V     S G        + ++    TN+  +H+D+ +T  A  +A  R F E +P 
Sbjct: 156 GEWMVVEADESDGTFLKLPTDVAIV----TNVDPEHLDHFKTFDAVQDA-FRSFVENVPF 210

Query: 241 ESPAIIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
              A++  D    + ++ R  +           A  R++ +   G   H K V    N++
Sbjct: 211 YGFAVMCIDHPVVQSMVGRIEDRRIVTYGENPQADARLVDLAPNGGGSHFKVV--FRNRK 268

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   +  D + P+PG     NA  A  +   +GI  A + + +     V  RF   
Sbjct: 269 T---DAAHEVSDLVLPMPGRHNALNATAAIAVAHELGIPDATIRKAIAAFGGVKRRFTKT 325

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           G    G  I  DY H    +  +LK  R  T G+++ V
Sbjct: 326 G-EWNGVTIIDDYGHHPVEIAAVLKAARESTGGKVVAV 362


>gi|88807416|ref|ZP_01122928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
 gi|88788630|gb|EAR19785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
          Length = 462

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 99/248 (39%), Gaps = 48/248 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALS 175
           + +TGT+GK++V   +Q +   +GL +   G     ++      L  T P P ++   +S
Sbjct: 113 IGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMS 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +    VS                    G +T L  DH++ H T +AY   K  L E
Sbjct: 173 SYQIEAAAEVSPRI-----------------GIWTTLTPDHLERHGTIEAYRAIKRGLLE 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QV 291
                E P ++ ADDA  ++       +  R +S             C  H+ +    Q+
Sbjct: 216 R---SEIP-VLNADDADIRQHCGHWSRSCIRWVS-------------CGDHSPEGGNPQL 258

Query: 292 TISVEG---KDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           T++ +G   +    LFP     LPGE    N L+     +A G+ ++ +   L     VP
Sbjct: 259 TVNAQGWVSRGEQHLFPADSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRCFTGVP 318

Query: 344 GRFEFVGT 351
            R E +G+
Sbjct: 319 HRLEPLGS 326


>gi|149006740|ref|ZP_01830426.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
 gi|147761655|gb|EDK68619.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIKTAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|139473556|ref|YP_001128272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|134271803|emb|CAM30036.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 463

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 145/384 (37%), Gaps = 78/384 (20%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR I  G +F+ + G + DGH FI  A   GA A           FS      
Sbjct: 26  LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGL 142
            P L+V++  K     A     K   +++AVTG++GK+S       V S   +  +  G 
Sbjct: 75  KPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGN 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + +IG   T+     D                         + +E     + Q  +  I
Sbjct: 135 YNNEIGLPYTVLHMPDDTE----------------------KIVLE-----MGQDHMGDI 167

Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250
           +L++          T +G  H++Y  ++      KM++ + +    S  I+ A      D
Sbjct: 168 RLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGM---NSDGILIAPGDPIID 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
            Y  E           V+  G Q +      V  I  +K  +T +          PLPG+
Sbjct: 225 PYLPE--------NQMVIRFGNQQEI----DVTGIQEDKDSLTFTTNVLATPVSLPLPGK 272

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
           +   NA+VAA +   + +    ++  L+ + +   R E+    + G  I  D Y     +
Sbjct: 273 YNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKA-ANGADILSDVYNANPTA 331

Query: 369 LEMILK---NIRTITSGRIIVVFG 389
           + +IL+   NI     G+ I V  
Sbjct: 332 MRLILETFANIAKNPGGKKIAVLA 355


>gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
 gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 183/468 (39%), Gaps = 76/468 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS +SR ++ G +FV   G   DGH F+  A+ +GA A     A   QD       +
Sbjct: 27  IKGVSINSRTMEPGNLFVPFKGEHTDGHRFVEDALRKGAAA-----ALWQQDVP-NPPLH 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            PILVV++T K +   +     +    +  +TG++GK++V     ++       S +   
Sbjct: 81  LPILVVEDTLKAVQQLSEAYRNELDIKVAGITGSNGKTTVKDMTARLL------SLRYKV 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQ-------HRLDG 201
             T  ++            +L   L+ LS +  T V+V E    G  +        R D 
Sbjct: 135 QKTEGNYNN----------HLGLPLTLLSLEEDTEVAVLEMGMSGFGEIEFLTKLARPDV 184

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + +     TN+G  H+    ++     AK+ + E L  K+   IIY  D    +     +
Sbjct: 185 VMI-----TNIGESHLQDLGSRAGIAKAKLEIIEGL--KDDGMIIYHGDEPLLKDRLNGY 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +   +V S G +G+   +  V     ++         D ++  P+ G   V NAL A   
Sbjct: 238 SGPAKVRSFG-KGQSNSIYPVRIDQEEKGSVFQANLSDMEYHLPVLGVHNVMNALCAMEA 296

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
              +GI    + E    L +   R E +    +G ++  D Y  +  S+   +  +  ++
Sbjct: 297 AHFLGIPYEQMNEGFASLKLTAMRME-LSEGCKGEKVINDAYNASPTSMRAAIDLVSELS 355

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-------SEDPEKIRAEII 433
              I V                    L LAD+  + DD  R       + DPEKI   + 
Sbjct: 356 GYSIKV--------------------LVLADMLELGDDEVRFHREIGQAIDPEKIDYVLT 395

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVHIVTNGE 479
            G  G      R+ A   A E+ +++ V   + KG   E +  +TN E
Sbjct: 396 FGSLG------RVIA-EGAQEVFSEERVFAFSEKGPLIEKLQSLTNAE 436


>gi|167037226|ref|YP_001664804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115645|ref|YP_004185804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226722951|sp|B0K8K5|MURD_THEP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166856060|gb|ABY94468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928736|gb|ADV79421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 454

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H+T + Y + K R+FE     E   + Y DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLDRHKTFENYRDIKGRIFENQREDEYTVLNY-DDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +     L +  A      + ISV G      D + ++ +PGE  + NAL A+ +    
Sbjct: 240 SRKS----LLENGAYIKDGSIYISVNGNAEKIIDIEEIY-IPGEHNLENALAASSVAYLS 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ + +  ++
Sbjct: 295 GISADVIANTLKTFKGVEHRIEFV-DEINGVKFYNDSKGTNP--DASIKAIQALKTPIVL 351

Query: 386 VVFGC--GGDRDQGKRPIMGKI 405
           +  G   G + D+  +   GK+
Sbjct: 352 IAGGYDKGSEFDEFVKAFNGKV 373


>gi|332200229|gb|EGJ14302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|317501878|ref|ZP_07960063.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088609|ref|ZP_08337520.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896768|gb|EFV18854.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407566|gb|EGG87066.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 461

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 118/316 (37%), Gaps = 38/316 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A I  N P L+     K   L  + L G+  +N    +AV+GT GK++  S +  I  
Sbjct: 75  YTAAINRNNPELIEAVALKIPMLTRAELLGQLMKNYDTPIAVSGTHGKTTTTSMISHILL 134

Query: 139 RSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              L      PT ++    +    N     S  ++ +A  Y +S                
Sbjct: 135 EGDLD-----PTISVGGILKAIGGNIRVGNSGTFITEACEYTNSF--------------- 174

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            H    I +I     N+  DH+D+ +  +         F ELLP++   II A+     E
Sbjct: 175 LHFFPKISVIL----NIEEDHLDFFKDLED-IRHSFHQFAELLPEDGTLIINAEIKDYAE 229

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFL-FPLPGEFQV 312
           + +      C V++ G  G F +  K         V   +   G+  D +   + G+  V
Sbjct: 230 IYE---GLSCNVVTYGTNGCFDYSAKNITYDENGHVAFDLFRRGEYADHIQLSVTGDHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  +   +G+   +    L        RFE+ G    G  +  DYAH    +   
Sbjct: 287 SNALSAIAVADILGLSIDITKRGLLSFTGTDRRFEYKG-EFNGVTVIDDYAHHPTEILAT 345

Query: 373 LKNIRTITSGRIIVVF 388
           LK  +      +  VF
Sbjct: 346 LKAAQHSLHNSVWCVF 361


>gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase.
           [Bacillus cereus E33L]
 gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus E33L]
          Length = 454

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/328 (18%), Positives = 133/328 (40%), Gaps = 39/328 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA + +   +Y       T   
Sbjct: 26  EIHGVCIDSKNMKEGNVFVPIIRVK-DGHEYVKEAMDNGAISSLWKKSY------GTPPK 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------G 141
             PI+ VD+T   L   A     +    ++ +TG++GK++V   ++ I + +       G
Sbjct: 79  GIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKG 138

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + QIG   TI    +D         +L   +       + ++S  A            
Sbjct: 139 NFNSQIGLPLTILEMKRDTE-------FLILEMGMSEKGQIRNLSRIAQPD--------- 182

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +G+ H++   +++    AK+ + + L  +E+   +Y  D        +  
Sbjct: 183 ----VAVITMIGQSHLETLGSRKEIAKAKLEIIDGL--RENGLFLYNGDEPLFSRNNKTS 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              C+      +     L       ++  V   +      +  PL G+  ++N +V   +
Sbjct: 237 GVNCKTFG---EKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAV 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                + +  + E L+++++   RF+F+
Sbjct: 294 GQFYKVPTEKIQEALQQINITQMRFQFL 321


>gi|15616836|ref|NP_240048.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11133470|sp|P57313|MURD_BUCAI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293622|pir||F84955 UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9)
           [imported] - Buchnera sp. (strain APS)
 gi|10038899|dbj|BAB12934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 121/302 (40%), Gaps = 61/302 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GKS+VA+ +++I ++SG  +F  G             +  P        L  
Sbjct: 108 IISITGTNGKSTVATMIEKIAKKSGYKAFLGG------------NIGVP-------VLEI 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   ++ +E SS  L+      +K       N+  DHI+ Y    Q Y N K+ ++ 
Sbjct: 149 LDKEADLYI-IELSSFQLENTF--NLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYN 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +        II ++D   K ++   H+   + +S G               N+    I  
Sbjct: 206 Q----AEICIINSNDKIEKSLI---HSKNKKWISFG--------------TNRSDYRICS 244

Query: 296 EGKDFDFLFP-----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +  D    F            L G     N LV+  +  A+       +  L+    +P 
Sbjct: 245 KSNDPILFFKNKKILNTSEILLYGYHNYNNILVSLAISDAMQFPRNDAINVLKSFSNLPH 304

Query: 345 RFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           RF+ +  N +G R   D   T+ NS ++ L +I+T  + R+++    GGD       I+ 
Sbjct: 305 RFQII-KNEKGVRWINDSKSTNVNSTQVALNSIKTTGTIRLLL----GGDSKSANFNILK 359

Query: 404 KI 405
            I
Sbjct: 360 NI 361


>gi|332072838|gb|EGI83319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|194396936|ref|YP_002038284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
 gi|4009466|gb|AAC95436.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae G54]
 gi|194356603|gb|ACF55051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
 gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
          Length = 471

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 29/249 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIR 87
           +  V +DSR ++ G  F+ + G + DGH F+  A+ +GA+A  V+   A+++ D     R
Sbjct: 29  LGPVCTDSRTLEPGSFFIPLRGERFDGHRFLANAVERGAQAAFVARDCAHAVPDGLLHWR 88

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L     ++  +L   +L       ++AVTG++GK++    +     RS L+    
Sbjct: 89  VEDTLLAY---QQLATLHRRQLSAA----VVAVTGSAGKTTTRELI-----RSALA---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLI 205
            P   + +   +N      P+ L  A    ++     V VE    G  +  RL    +  
Sbjct: 133 -PLGDVQASDSNNNNDIGVPLTLLGAHREHAA-----VVVEMGMRGAGEIERLSRCAEPQ 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  HI    ++ A  +AK  +   L P     +I A DA  ++ + R      
Sbjct: 187 IAVITNIGTAHIGRLGSRAAIASAKCEITAALSPL-GIVVIPAGDALLEDALSRCWTG-- 243

Query: 266 RVLSVGYQG 274
           R+L V   G
Sbjct: 244 RILRVALDG 252


>gi|317484864|ref|ZP_07943756.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
 gi|316923910|gb|EFV45104.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
          Length = 455

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 32/237 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK+S  S    I   + L  +  IG    I+++  + RL              
Sbjct: 109 IAIAGTHGKTSTTSLTAAIFDAASLDPTVIIG--GRINAYGANARL-------------- 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG   ++    S G     L  I ++    TN+ RDH+D++  Q+A   A +    +
Sbjct: 153 --GQGEYLIAEADESDGSFLCLLPIINVV----TNVDRDHLDHYGNQEAIDEAFVSFMNQ 206

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTIS 294
           + P     ++  DD   + ++ R       V++ G+  G  I  + + C + N+ +V I 
Sbjct: 207 I-PFYGLNVVCGDDPGVERLLPRVKRP---VVTYGFGSGNHIRAEVLECGVINRFKVFI- 261

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +G++  +     PG   + NAL A G+ +  GI+    +E L +   V  RFE  G
Sbjct: 262 -KGEELGEVTLRQPGRHNILNALAAIGVALDAGIEPHFCIEGLARFGGVGRRFEHKG 317


>gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase, degenerate
           [Bacillus cereus Q1]
 gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus Q1]
          Length = 451

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 152/345 (44%), Gaps = 31/345 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 23  EIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDNGAVASLWKKSY------GTPPK 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             PI+ VD+T   L   A     +    ++ +TG++GK++V   +  I      S++++ 
Sbjct: 76  GIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILS----STYRVH 131

Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            T    +F  ++++  P  I  + +   +L  +    +S +     L +     + +I  
Sbjct: 132 KTK--GNF--NSQIGLPLTILEMERNTEFLILE--MGMSEKGQIRNLSRIAQPDVAII-- 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +G+ H++   +++    AK  + + L   +    +Y  D    E +   H     +
Sbjct: 184 --TMIGQSHLETLGSREEIAKAKFEIVDGL--HDDGLFLYNGD----EPLLSQHINTLGI 235

Query: 268 LSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S  + GK+ + L       ++  V   +      +  PL G+  ++N +V   +     
Sbjct: 236 ESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYK 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + +  + E L+++++   RF+F+   ++ G   ++ A  +N   M
Sbjct: 296 VSTEKIQEALQQINITQMRFQFL--TAKAGFTIINDAWNANPSSM 338


>gi|254476425|ref|ZP_05089811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
 gi|214030668|gb|EEB71503.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
          Length = 468

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 25/152 (16%)

Query: 101 FLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           F    A+R + ++ +   I+AVTG++GKS+  + +  I Q +G  S   G    I     
Sbjct: 104 FFRSVATRGWEQYDQAPRIVAVTGSNGKSTTVALLHHILQEAGRESQLAG---NIGRGVL 160

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D              +    S GV  V +E SS+  D  R   +      FTNL  DH+D
Sbjct: 161 D--------------IDPPGSGGV--VVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLD 202

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H     YF AK RLF E  P    AII  D+
Sbjct: 203 RHAGMGGYFAAKRRLFAEGGPDR--AIIGVDE 232


>gi|85373187|ref|YP_457249.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter litoralis
           HTCC2594]
 gi|122545203|sp|Q2NCY9|MURC_ERYLH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84786270|gb|ABC62452.1| UDP-N-acetylmuramate-alanine ligase [Erythrobacter litoralis
           HTCC2594]
          Length = 474

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 145/388 (37%), Gaps = 74/388 (19%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYL 170
           ++ +AV GT GK++  S +  +     L    I PT      I  +  + RL     +  
Sbjct: 108 KSTVAVAGTHGKTTTTSMIAAL-----LDCGDIDPTVINGGIIEQYGSNARLGDSEWMV- 161

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                           VEA        RLDG   +    TN+  +H+D++      F+  
Sbjct: 162 ----------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHY----GDFDGV 198

Query: 231 MRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH- 286
            R F + +   P    AI+  D    + V+ +  +   RV++ G+  +      +C ++ 
Sbjct: 199 KRAFLDFIHNVPFYGAAILCIDHPEVQAVIGQVRDR--RVMTYGFSLQ----ADICGVNI 252

Query: 287 ------NKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                 N   V +   G++     D   P+PG   V NAL A  + I +G    ++    
Sbjct: 253 RPEGGGNVFDVIVRQRGEEDRRIADVHLPMPGRHNVQNALAAIAVSIEMGCSDEVIQRGF 312

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG 391
           E    V  RF  VG    G  I  DY H    +  +L   +   S     GR+I V    
Sbjct: 313 ESFGGVRRRFTKVGEVG-GATIIDDYGHHPVEIAAVLGAAQEAVSSSDKGGRVIAV--AQ 369

Query: 392 GDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA 448
             R    R +M       + AD   VT      EDP + I AE +  + G   +G+R  A
Sbjct: 370 PHRYTRLRDLMDDFQSCFNDADAVYVTPVYEAGEDPIDGIDAEAL--VAGLKSRGHRHAA 427

Query: 449 I--------RTAIEMLNKQDVLVVAGKG 468
                    RT    + + DV+V  G G
Sbjct: 428 TIADPQALARTLAGEIEEGDVVVCLGAG 455


>gi|149011468|ref|ZP_01832715.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684612|ref|YP_001836359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303258599|ref|ZP_07344579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262686|ref|ZP_07348626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303263626|ref|ZP_07349548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
 gi|303266387|ref|ZP_07352276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|303268260|ref|ZP_07354058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|147764458|gb|EDK71389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629946|gb|ACB90894.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802372|emb|CBW35126.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV200]
 gi|302636242|gb|EFL66737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640100|gb|EFL70555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302642211|gb|EFL72560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|302644087|gb|EFL74345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|302646664|gb|EFL76889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|58698887|ref|ZP_00373754.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534596|gb|EAL58728.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 462

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 138/328 (42%), Gaps = 48/328 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTG 122
           G  A  +S A  +   SA    N  ++   N  K +     + A  L  K+   ++AV+G
Sbjct: 65  GHNANNISQAQIVVHSSAIESDNVELVTARNNNKTILHRSDILAELLRDKY---VIAVSG 121

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++  + +  I   S + +  I     ++S+  ++RL   S I+L +A     S G 
Sbjct: 122 SSGKTTTTAMIASIFDHSNIDATVI-VGGILNSYQSNSRLG-KSDIFLIEADE---SDG- 175

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T + + A+           I +I    T++  DH+D++ T    F+     F + + K  
Sbjct: 176 TMLKIPAN-----------ITVI----TSINDDHMDHYGT----FDDIKHAFSQFINKAD 216

Query: 243 PAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            AI+        DA S  +M    +   R  ++      I       I N  ++   V  
Sbjct: 217 FAILPDSVGINYDA-SNSMMFGFESGNIRASNIKQHANSIEFD--VLIDNNHRIKNVV-- 271

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                L    G  +V NAL A  + I +GI  A + + L +   V  RF  +  + +G +
Sbjct: 272 -----LSNTIGMHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLIA-DIKGVK 325

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRII 385
           +  DYAH  N +   L   R+IT G++I
Sbjct: 326 LIEDYAHHPNEIYATLTAARSITKGKVI 353


>gi|307265084|ref|ZP_07546644.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919882|gb|EFN50096.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 464

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+DY +          R F  L+P +   +   DDA     M   +     +++ 
Sbjct: 184 NVDSDHLDYFKNIDN-IKQSFRQFANLVPPDGFVVACKDDA---NTMYVVNGLNKNIVTY 239

Query: 271 G------YQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G      ++ K I    K CAI +        E    +F   +PG+  +YNAL A  +  
Sbjct: 240 GIYQDSDWKAKNISFDDKGCAIFD----VYYKEEYMGNFKLSIPGKHNIYNALAALAVSH 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID      +L +      RFE  G    G  I  DYAH    ++  L+  +     R
Sbjct: 296 LVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDDYAHHPAEIKATLEAAKNYPHKR 354

Query: 384 IIVVF 388
           II +F
Sbjct: 355 IICIF 359


>gi|270159082|ref|ZP_06187738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|289166082|ref|YP_003456220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
 gi|269987421|gb|EEZ93676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|288859255|emb|CBJ13189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
          Length = 484

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 144/362 (39%), Gaps = 78/362 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+V + V ++ + +G   +++     I          TP        L  
Sbjct: 107 VIAITGTNGKSTVTTLVGEMAKAAG---YKVAVAGNIG---------TP-------VLDM 147

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L+ +    + V E SS  LD      ++ IA +  N+  DH+D H T +AY  AK R++ 
Sbjct: 148 LNDEHQYDLWVLELSSFQLDLTY--SLEPIAATILNVTPDHLDRHHTMEAYIQAKQRIYH 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIH--LKKVCAIHNKQQV 291
               K   A+   DD Y+   M  +H+     + LS       +   L   C+   K+++
Sbjct: 206 ----KARVALFNRDDFYTVP-MTSSHDDAKISQELSTNKTSSILREPLSHACSEREKEEI 260

Query: 292 TISVE------GKD---------------------FDFLFP-----LPGEFQVYNALVAA 319
            +         GKD                          P     + G    +NAL A 
Sbjct: 261 HLRGNVNRISFGKDAPEKNNWGLINQENKIYLAKGHTCFLPVESVLIKGVHNWFNALAAC 320

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIR 377
            L    GI    ++E L     +P R ++V T    G  +++ +  +N    I  +  I 
Sbjct: 321 ALADIAGITQQHIIEVLTTFTGLPHRCQWVRT--LDGVDWINDSKGTNIGATISAINGIG 378

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI--AIVTDDNPRSEDPEKIRAEIIHG 435
               G+I+++ G      QGK     ++   +AD   +IV       ED +KI A + + 
Sbjct: 379 GSMQGKIVLIAG-----GQGKGADFKELTQPIADFVRSIVL----IGEDADKIEAALANV 429

Query: 436 IP 437
           +P
Sbjct: 430 VP 431


>gi|332652745|ref|ZP_08418490.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
 gi|332517891|gb|EGJ47494.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
          Length = 464

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 132/344 (38%), Gaps = 56/344 (16%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GHL  P+++ QGA+ ++ ++A    +          I V +  + + ++       +H +
Sbjct: 71  GHL--PESV-QGADCVIRTAAVHDDNPEIAAARAAGIPVFERAQAWGAIM------RHYQ 121

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----------AQDNRLTTP 165
           N L V GT GK++  S    I       + Q  PT  I              + + +   
Sbjct: 122 NALCVAGTHGKTTTTSMCTHI-----FLAAQRDPTVMIGGVLPALGAGHRVGKGDTIILE 176

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S  Y    LS+  +  V                            N+  DH+D+ +  + 
Sbjct: 177 SCEYCNSFLSFFPTVAV--------------------------ILNVDADHLDFFKDLED 210

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             ++  R F +L+P+    +   DDA + + +K        +L+ G +   IH   +   
Sbjct: 211 VKHS-FRRFAQLVPQGGCVVADGDDANTMDALKDLDKP---MLTFGLEQGDIHAANLTWN 266

Query: 286 HNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                  +  +GK    +   +PG   V NAL AAG  + + +    + E L        
Sbjct: 267 KGLPTFDLIYKGKTLGSISLRVPGIHNVRNALAAAGAALQLNVPVEAIREGLYAFGGAGR 326

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           RFE  G    G  +Y DYAH  + L+ +L  ++T+   R+I  F
Sbjct: 327 RFEHKG-EYHGAVVYDDYAHHPHELQALLSTVKTLGYQRVICAF 369


>gi|325663714|ref|ZP_08152118.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470207|gb|EGC73440.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 459

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 124/316 (39%), Gaps = 38/316 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A + ++ P  +     +   L  + L G+   N    +AV+GT GK++  S +  I  
Sbjct: 75  YTAAVHADNPEFIAAKEHQIPMLTRAELLGQLMTNYKTPIAVSGTHGKTTTTSMISHI-- 132

Query: 139 RSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              L +    PT ++    +    N     S +++ +A  Y +S                
Sbjct: 133 ---LLAGDTDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNS---------------- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              LD +  I G   N+  DH+D+ +      ++  R F  LLP +   II ++ +  ++
Sbjct: 174 --FLDFLPKI-GIILNVEEDHMDFFKDLDDIRHSFHR-FAALLPNDGTLIINSEISQYEQ 229

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLF-PLPGEFQV 312
           ++       C V++ G      +  +     N   V+  +   G   D +F  + GE  V
Sbjct: 230 IIA---GLNCNVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A      +GID   + + L        RFE+ GT   G  I  DYAH    +E  
Sbjct: 287 SNALSAIITGTLLGIDLEKIKKGLLSFTGTDRRFEYKGT-LDGVTIIDDYAHHPTEIEAT 345

Query: 373 LKNIRTITSGRIIVVF 388
           L   +      I  +F
Sbjct: 346 LSAAQHYPHREIWCIF 361


>gi|260424625|ref|ZP_05732710.2| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
 gi|260402591|gb|EEW96138.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
          Length = 456

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 103/249 (41%), Gaps = 20/249 (8%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A    N+  DHI+ H T + Y  AK R+FE  + K++  ++ A+D Y+  +MK+A N   
Sbjct: 183 AAVILNITPDHIERHHTMERYVAAKARIFEN-MGKDNCLLLNAEDEYTPILMKKAKNTTV 241

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGL 321
            + S+          +  A  N   + I   GK           L G     N L AA L
Sbjct: 242 CLFSISRD------VEEGACLNGADLVIKRRGKVLKVAGIDELQLTGNQNYQNVLAAAFL 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               GI    + + + +   +P R EFV      G  Y + +  +N+ +  +K + T   
Sbjct: 296 AYEGGIPLEAIHDGIIEFKGLPHRIEFV--RELDGVSYYNDSKATNT-DAAIKGMETFN- 351

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PEKIRAEII---HGIP 437
            R I++   G D+       M  +   +  + ++ +   R +D  EK   + I     + 
Sbjct: 352 -RPIILIAGGYDKHTKLDKFMKTVKARVKCLILLGNAAARFKDEAEKAGIKTIVLADDMR 410

Query: 438 GFIEKGNRI 446
           G +EKG  I
Sbjct: 411 GAVEKGKSI 419


>gi|257885178|ref|ZP_05664831.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
 gi|257821030|gb|EEV48164.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
          Length = 453

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 20/189 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   HIDYH T++ Y  AK  L + +  K+   + +       E+ + A     RVL 
Sbjct: 189 TNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILNWNQS----ELQELAQRTKARVLP 244

Query: 270 VGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              +      ++       + K+++    E         +PG+  V NAL A  +    G
Sbjct: 245 FSTKEVLEGGVYADDYSIYYKKEKIMEISE-------LGVPGKHNVENALAAISVAKLYG 297

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRII 385
           I +  + E L   H VP R ++VG   +G + Y D   T+  + +M L    T      +
Sbjct: 298 ISNEAIRETLNLFHGVPHRTQYVG-EIQGRKFYNDSKATNILATKMALSGFETSK----V 352

Query: 386 VVFGCGGDR 394
           V+   G DR
Sbjct: 353 VLLAGGLDR 361


>gi|326334992|ref|ZP_08201192.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692797|gb|EGD34736.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 445

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 158/370 (42%), Gaps = 53/370 (14%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLT 163
           FASR        I+AVTG++GK++  S +  + +++GLS   IG    I +SFA   R+ 
Sbjct: 94  FASRY---TQAKIIAVTGSNGKTTTTSLLYHLLEQAGLS---IGVGGNIGNSFA---RMV 144

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
              P                +  +E SS  LD   +   +       N+  DH+D +  Q
Sbjct: 145 AQEP--------------KEYYVLEISSFQLDD--ISSFRPHIALLLNITPDHLDRYNYQ 188

Query: 224 -QAYFNAKMRLFEELLPKESPAIIY-ADD-AYSKEVMKRAH-NAGCRVLSV---GYQGKF 276
            Q Y +AK R+ E     ++  +IY ADD    +E+ KR    A C   S+     QG +
Sbjct: 189 FQNYIDAKFRITE--FQSQADFLIYDADDPVLQEELAKRKDIKAQCIPFSLEKSNEQGAY 246

Query: 277 IHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
               K+  I  N+ +  +S+          + G+  + N + A+     + I +  + + 
Sbjct: 247 CLDDKLFHITINQNKFEMSIRE------LTIKGKHNLKNVMGASVAAKLLNIRNENIRKS 300

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     VP R EFV     G   Y++ +  +N +  +   + ++  G I +V   G D+ 
Sbjct: 301 LMTFQGVPHRLEFV--KEVGEVRYINDSKATN-VNSVYYALDSMPDGLIWIV--GGQDKG 355

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               P++  ++  +  I  +  DN      +KI       +P  IE  +  +A++ +  +
Sbjct: 356 NDYNPLIPYVSQKVKAIVCLGLDN------QKIIQTFQSIVPTIIETHSMEDAVQVSRGL 409

Query: 456 LNKQDVLVVA 465
             + D ++++
Sbjct: 410 SEEGDTVLLS 419


>gi|303239793|ref|ZP_07326317.1| UDP-N-acetylmuramate/alanine ligase [Acetivibrio cellulolyticus
           CD2]
 gi|302592730|gb|EFL62454.1| UDP-N-acetylmuramate/alanine ligase [Acetivibrio cellulolyticus
           CD2]
          Length = 469

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 125/321 (38%), Gaps = 47/321 (14%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG----KHPENILAVTGTSGKSSVASFVQQIC 137
           ++A ++ N   LV        ++  + L G    K+P + LA++GT GK++  S V  I 
Sbjct: 77  YTAAVKENNSELVKARQLGITTIERAVLLGQIMKKYPFS-LAISGTHGKTTTTSMVSMIM 135

Query: 138 QRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             S L  +  IG    + +   + R+   +  ++ +A  Y+ S              L  
Sbjct: 136 LESNLDPTIHIG--GELDAIGGNTRIG-GNKYFITEACEYVESF-------------LKF 179

Query: 197 HRLDGIKLIAGSFTNLGRDHIDY----HQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           +    I L      N+  DH+DY    +  +QA+       F  L+PK+   I  ADD  
Sbjct: 180 YPTLAIVL------NIEEDHLDYFKDINHIKQAFLK-----FMNLVPKDGYIIACADDEN 228

Query: 253 SKEVMKRAHNA----GCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLP 307
              ++ +        G    +  +  + I      CA ++     I    K       +P
Sbjct: 229 VSSILSQISTNVVTYGINSTNATWTARNIEFDDSGCASYD----LIKSGQKVAAIKLRVP 284

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N++ AA  C  +G D   +   LE       RFE  G      ++  DYAH  +
Sbjct: 285 GIHNVSNSIAAAAACYTLGCDIKDIEHGLEAFTGTHRRFEVKGV-VENIKVVDDYAHHPS 343

Query: 368 SLEMILKNIRTITSGRIIVVF 388
            ++  LK  ++    +I  VF
Sbjct: 344 EIKATLKAAKSTNHTKIWCVF 364


>gi|92116833|ref|YP_576562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           hamburgensis X14]
 gi|118595668|sp|Q1QNU5|MURD_NITHX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91799727|gb|ABE62102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           hamburgensis X14]
          Length = 466

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + V  + + +G    Q+G     +  +    L  P            
Sbjct: 117 VAITGTNGKSTTTALVAHLMREAG-HDVQMGGNIGTAILS----LEPPR----------- 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  HV +E SS+ +D      +    G   N+  DH+D H T + Y   K RL   +
Sbjct: 161 --KGRVHV-IEMSSYQIDL--TPSLDPTVGILLNVSPDHLDRHGTIEHYAAVKERLIAAV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            P  + A++  DD +S+    R   AG RV+ V
Sbjct: 216 QPHGT-AVVGVDDIWSRTAADRIEQAGKRVVRV 247


>gi|256752933|ref|ZP_05493764.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748188|gb|EEU61261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 450

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H+T + Y + K R+FE     E   + Y DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLDRHKTFENYRDIKGRIFENQREDEYTVLNY-DDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +     L +  A      + ISV G      D + ++ +PGE  + NAL A+ +    
Sbjct: 240 SRKS----LLENGAYIKDGSIYISVNGNAEKIIDIEEIY-IPGEHNLENALAASSVAYLS 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ + +  ++
Sbjct: 295 GISADVIANTLKTFKGVEHRIEFV-DEINGVKFYNDSKGTNP--DASIKAIQALKTPIVL 351

Query: 386 VVFGC--GGDRDQGKRPIMGKI 405
           +  G   G + D+  +   GK+
Sbjct: 352 IAGGYDKGSEFDEFVKAFNGKV 373


>gi|148984108|ref|ZP_01817403.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
 gi|147923397|gb|EDK74510.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
          Length = 370

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS 140
           +   +
Sbjct: 121 LLSTT 125


>gi|260772145|ref|ZP_05881062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
 gi|260613012|gb|EEX38214.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
          Length = 466

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 114/281 (40%), Gaps = 39/281 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++ AS +  I ++ G    F +G    + +F    RL   S  ++ +A  
Sbjct: 118 VLAVAGTHGKTTTASMLTWILEQCGYQPGFLVG--GVLGNFDLSARLGE-SMFFVVEADE 174

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    I        NL  DH D     +A      R F 
Sbjct: 175 YDSA------FFDKRSKFVHYHPRTLI------LNNLEFDHADIFDDLEAI----KRQFH 218

Query: 236 EL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQ 290
            L   LP          D+   +V+ R    GC      +G QG++   KK    HN Q 
Sbjct: 219 HLIRTLPGNGRVFAPQQDSALADVLSR----GCWSEREFIGQQGQW-QAKK----HNPQG 269

Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +V  +D    D  + L G+  V NAL+A      +G+   L  + L        R E
Sbjct: 270 SQFAVYFQDQRVGDVEWSLIGDHNVNNALMAIAAARHVGVTPDLACQALASFINTKRRLE 329

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
             G  + G  +Y D+AH   ++E+ L  +R  + S +II V
Sbjct: 330 QKGQEN-GVTVYDDFAHHPTAIELTLSGLRNKVGSEKIIAV 369


>gi|225630075|ref|YP_002726866.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia sp. wRi]
 gi|254766032|sp|C0R5N3|MURC_WOLWR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225592056|gb|ACN95075.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia sp. wRi]
          Length = 474

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 138/328 (42%), Gaps = 48/328 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTG 122
           G  A  +S A  +   SA    N  ++   N  K +     + A  L  K+   ++AV+G
Sbjct: 77  GHNANNISQAQIVVHSSAIESDNVELVTARNNNKTILHRSDILAELLRDKY---VIAVSG 133

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++  + +  I   S + +  I     ++S+  ++RL   S I+L +A     S G 
Sbjct: 134 SSGKTTTTAMIASIFDHSNIDATVI-VGGILNSYQSNSRLG-KSDIFLIEADE---SDG- 187

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T + + A+           I +I    T++  DH+D++ T    F+     F + + K  
Sbjct: 188 TMLKIPAN-----------ITVI----TSINDDHMDHYGT----FDDIKHAFSQFINKAD 228

Query: 243 PAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            AI+        DA S  +M    +   R  ++      I       I N  ++   V  
Sbjct: 229 FAILPDSVGINYDA-SNSMMFGFESGNIRASNIKQHANSIEFD--VLIDNNHRIKNVV-- 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                L    G  +V NAL A  + I +GI  A + + L +   V  RF  +  + +G +
Sbjct: 284 -----LSNTIGMHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLIA-DIKGVK 337

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRII 385
           +  DYAH  N +   L   R+IT G++I
Sbjct: 338 LIEDYAHHPNEIYATLTAARSITKGKVI 365


>gi|224542359|ref|ZP_03682898.1| hypothetical protein CATMIT_01538 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524741|gb|EEF93846.1| hypothetical protein CATMIT_01538 [Catenibacterium mitsuokai DSM
           15897]
          Length = 401

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 163/396 (41%), Gaps = 86/396 (21%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPI----- 168
           +N++ V GT+GK S  ++++ I    G   + +G  ++      ++R+     PI     
Sbjct: 38  KNMIHVAGTNGKGSTVNYLRSILNAHG---YHVGTFTSPYMIKHNDRIRIDDQPISDEDL 94

Query: 169 --YLAKALSYLSSQGVTHVSVEA-------SSHGLD-----------QHRLDGIKLIAGS 208
              + K  + +  + ++   ++        SSH LD             + + I+ I  +
Sbjct: 95  LALINKYETVIEEKNLSMFEIDVLIMLDYFSSHDLDYRIIECGIGGANDKTNVIQPIISA 154

Query: 209 FTNLGRDHIDYHQTQQAYF---NAKMRLFEE---LLPKESPAIIYADDAYSKEVMKRAHN 262
            TN+G DH+D  Q   + +   N KM + +E    +  E   ++ A       + ++   
Sbjct: 155 ITNIGNDHLD--QIGPSLYDVINEKMGIIKEGQYFITSEVEGMVLA------RLQEQCDA 206

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G  ++             V   +   +       +D  F     G +QV NA +A  L 
Sbjct: 207 MGATMV-------------VVPEYQVSRYPFHFRYRDMAFTLEKQGVYQVANARLA--LT 251

Query: 323 IA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           IA   I +D     + +E+  V  GRFE +  N  G ++ +D AH ++ ++ +L  ++ +
Sbjct: 252 IANKLINLDEKTTEKAIEEA-VWYGRFEMM--NVAGHQVILDGAHNTDGVKALLTTMQYM 308

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAIVTDDNPRSEDPEKIRA-EII 433
            +   + +F    D+D  +        ++L D     I + + ++ R+ D E  R+   +
Sbjct: 309 RTKDTVFIFSGLKDKDVDE-------MIELIDEAGYPIYLTSFNDERASDLEDYRSFSTV 361

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             +P F       EAI+ A   L K D LV+ G  H
Sbjct: 362 TVVPHF------AEAIKVA---LLKHDQLVITGSLH 388


>gi|320457842|dbj|BAJ68463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 493

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 102/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 112 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLC- 170

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 171 --------------VELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSK 214

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F         AI+Y A DA   E+   A  A GCR   VG+              G  +
Sbjct: 215 VFH----NAKHAIVYNAQDAKVSELAAEAQTAEGCR--KVGFTLEAPQAGQIGIEDGWIV 268

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + V ++    DF  L    G      V +AL A  L + +G D    L+
Sbjct: 269 DRSGVAGGAVGEPVRLAAI-TDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALK 327

Query: 335 HLEKLHVVPGRFEFVGTN-SRGGRI-YVDYAHTSN 367
            L        R E V      GG + +VD +  +N
Sbjct: 328 ALTSFKPGGHRIETVAEAVVEGGSVRFVDDSKATN 362


>gi|308177863|ref|YP_003917269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
 gi|307745326|emb|CBT76298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
          Length = 485

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V++DSR +  G ++VA  G   DGH FI  A A GA   V+S A  +       R +
Sbjct: 27  ITSVATDSREVLPGALYVAKPGEFSDGHTFIDGARAAGA---VLSLAERIT-HDEERREH 82

Query: 90  TPILV---VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             I+V   VD   K  +   S L  K+   ++ +TG++GK++    +  I  ++  +   
Sbjct: 83  PAIIVEDAVDAMGKIAAHIVSHLKAKNDAKVVGITGSAGKTTTKDLLAGILSQAAPTVSP 142

Query: 147 IG 148
           IG
Sbjct: 143 IG 144


>gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
 gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
          Length = 455

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 46/372 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G +FV + G + DGH FI  AI  GA A +    +  +        +
Sbjct: 24  ITSVAFDSRKITDGGLFVPLEGER-DGHEFIASAINNGASATLWKKGHPNK------PED 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ VD+    +   A     K    ++ +TG++GK++    +  +  +     F +  
Sbjct: 77  IAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   ++F  +N +  P  I     L    +  +  + +     G   H  +         
Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GC 265
           T +G  HI++  ++    +AKM +  + L ++   I   D+   +E  ++   A    G 
Sbjct: 184 TMIGEAHIEFFGSRDKIADAKMEI-TDFLREDGEFIFNGDEPLLQERAEKLDQAKATFGF 242

Query: 266 R----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           R    V + G++    H             T +V   +  F  P+ G+  V NA+ A  +
Sbjct: 243 RDEDTVHATGFKSYMHH------------ATFTVNDSEQKFSIPMIGKHNVSNAMAAISV 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN---IR 377
               G     +   L        R E+   ++ G  I  D Y     ++  +L +   + 
Sbjct: 291 GRHFGESDEEIASSLSNFTPTANRMEWEKGDA-GESIMSDIYNSNPTAVRAVLTSFGQVE 349

Query: 378 TITSGRIIVVFG 389
               GR I V G
Sbjct: 350 VKDGGRRIAVLG 361


>gi|160914185|ref|ZP_02076407.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
 gi|158433996|gb|EDP12285.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
          Length = 525

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 53/331 (16%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF-------QIGPTSTISSFA 157
           A +L  +H   +I+ +TG+ GK+SV   + Q+  +   +         ++G T TI    
Sbjct: 171 AKQLLQQHQNLHIIGITGSYGKTSVKHILYQLIAQQYYTLMTPHSYNNKMGITLTIR--- 227

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
              +L +   ++L +        G  HV  E S+       +  +K      T +G  H+
Sbjct: 228 --KQLQSLHEVFLCEM-------GADHVH-EISA------LMAFVKPSWSIVTAIGPQHL 271

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKF 276
              QT +   + KM+  E  LPK+    +  D+A+ +E   +     CR+++ G +    
Sbjct: 272 STFQTMEHIVHEKMQAIE-CLPKDGIGFLNIDNAWIREYPIQN---TCRIVTYGTHAAAD 327

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA--IGIDSALVLE 334
             +K +          I V+G D+ F   L G+  V N  +AAG+ +A  +GI+ +++ E
Sbjct: 328 YRIKDIVYSKQGASFKIHVKGVDYAFHTKLLGKHNVVN--IAAGIAVAHCLGIELSVLQE 385

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSGRIIVV- 387
             + L  V  R +   T+S      +D A+ SN      +LE++ K       G+ IVV 
Sbjct: 386 LTKHLPYVEHRLQLRPTSSYTM---LDDAYNSNVEGATYALEVLAK-----MEGKHIVVT 437

Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             F   GD ++     +GK    +AD  I+ 
Sbjct: 438 PGFLDLGDMEENAHVRLGKQLTQVADEVILV 468


>gi|171913124|ref|ZP_02928594.1| UDP-N-acetylmuramate--alanine ligase [Verrucomicrobium spinosum DSM
           4136]
          Length = 770

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 14/219 (6%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLS 269
           N+  +H+DY++      N    +F +LL K S   +Y A+D  + E+ +   N     +S
Sbjct: 191 NIEAEHLDYYED----LNEIKLVFRQLLEKTSGYSVYCAEDPVATELCEGRKNG----IS 242

Query: 270 VGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G+         +  +   Q +  +  +G+   + L  +PG   V N+L A  L +++G+
Sbjct: 243 YGWSRDHNFSANILELRPAQTRYEVFQKGELLGEVLLGIPGRHNVLNSLAAISLAVSVGV 302

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             + + + LE       RFE   + S+  +I  DY H    ++  L   + +   RI+ +
Sbjct: 303 PFSSIKQALESFRGARRRFEVKYSGSQ-YQIIDDYGHHPTEIKATLATAKALNPKRIVCL 361

Query: 388 FGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           F      R Q  +   G  A +  D+  VTD    SE P
Sbjct: 362 FQPHRYSRTQLLKQEFGG-AFNDVDVLCVTDVYAASEKP 399


>gi|167040634|ref|YP_001663619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter sp. X514]
 gi|300914675|ref|ZP_07131991.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307724091|ref|YP_003903842.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
 gi|226722952|sp|B0K3H2|MURD_THEPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166854874|gb|ABY93283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           sp. X514]
 gi|300889610|gb|EFK84756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307581152|gb|ADN54551.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
          Length = 454

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H+T + Y + K R+FE     E   + Y DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLDRHKTFENYRDIKGRIFENQREDEYTVLNY-DDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +     L +  A      + ISV G      D + ++ +PGE  + NAL A+ +    
Sbjct: 240 SRKS----LLENGAYIKDGSIYISVNGNAEKIIDIEEIY-IPGEHNLENALAASSVAYLS 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ + +  ++
Sbjct: 295 GISADVIANTLKTFKGVEHRIEFV-DEINGVKFYNDSKGTNP--DASIKAIQALKTPIVL 351

Query: 386 VVFGC--GGDRDQGKRPIMGKI 405
           +  G   G + D+  +   GK+
Sbjct: 352 IAGGYDKGSEFDEFVKAFNGKV 373


>gi|120609513|ref|YP_969191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
 gi|120587977|gb|ABM31417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
          Length = 667

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 29/144 (20%)

Query: 102 LSLFASRL------YGKHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTST 152
           L LFA  L      +G  P  +LA+TGT+GK++V S    + + +G S   +  IGPT  
Sbjct: 263 LGLFAMALDALKASHGYAP-AVLAITGTNGKTTVTSLTGLLVECAGRSVAVAGNIGPTLL 321

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +     +  T P    L   LS    +G                   G +  A +  N+
Sbjct: 322 DTLGRHLDADTLPQAWVLE--LSSFQLEGAA-----------------GFEPTAATVLNV 362

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEE 236
            +DH+D+H   QAY  AK R+F E
Sbjct: 363 TQDHLDWHGDMQAYARAKARIFGE 386


>gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
 gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
          Length = 455

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 33/210 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD--FSA 84
           E  +  +S DSR ++   +FV ++G K D H F+ QA   GA A + S   +  +    A
Sbjct: 23  ETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAAASLTSEHDTCPEGITGA 82

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            IR       V++T+K L      +  +    ++ +TG+ GK++    +      +G  +
Sbjct: 83  LIR-------VEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMIAAALS-AGYRT 134

Query: 145 F--------QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQ-----GVTH 184
           F        Q+G   TIS  ++ +        ++ P  + +   ++ + +      GVTH
Sbjct: 135 FKTPANHNSQVGVPITISDISEADEIGVLELGMSEPGEMEVIADIARVDTAVITNIGVTH 194

Query: 185 VSVEASSHGLDQHRL---DGIKLIAGSFTN 211
           +    S   + + +L   DG+K     F N
Sbjct: 195 IENLGSRENILKEKLRIQDGMKKGGTLFLN 224


>gi|317124646|ref|YP_004098758.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Intrasporangium
           calvum DSM 43043]
 gi|315588734|gb|ADU48031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Intrasporangium
           calvum DSM 43043]
          Length = 496

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 37/199 (18%)

Query: 83  SATIRSNTPILVVDNTRKF-------LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           S  +  + P+++   TR         L+     L G  P   L VTGT+GK++  + +  
Sbjct: 93  SPGVPPHDPLMLAAATRGLPVWGEVELAWRMRPLEGAAP--WLTVTGTNGKTTTVNMLAS 150

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I + SGL +   G   T              PI  A     L  +    ++VE SS  L 
Sbjct: 151 ILRASGLRATSAGNVGT--------------PILEA----VLHPEPYDVLAVELSSFQLH 192

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYS 253
             R   I  +A +  N+  DH+D+H +   Y  AK ++++        A +Y  AD    
Sbjct: 193 WQR--SISAVASAVLNVAPDHLDWHGSYAEYLRAKGKIYD----NTHLACVYNVADIQTE 246

Query: 254 KEVMKRAHNAGCRVLSVGY 272
           + VM+     GCR  +VG+
Sbjct: 247 QLVMEAEVVEGCR--AVGF 263


>gi|258593038|emb|CBE69349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [NC10 bacterium
           'Dutch sediment']
          Length = 460

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 21/146 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + +TGT+GKS+  + +  + +++GL S+  G             + TP    L +   
Sbjct: 110 TFIGITGTNGKSTTTTLIGAMLKQAGLPSYVAG------------NIGTP----LCRVAP 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L++     V  E SS  L+   +D  +       NL  DH+D +   + Y+ AK R+FE
Sbjct: 154 SLAAG--ECVVAELSSFQLET--IDEFRPRVALLLNLAPDHLDRYDQVEDYYRAKARIFE 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAH 261
              P +  A+I ADD    +V  +A 
Sbjct: 210 NQRPSDF-AVINADDPLVLQVSAQAR 234


>gi|260462091|ref|ZP_05810335.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031951|gb|EEW33218.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
          Length = 468

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 24/192 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++ +      A  R F E +P     ++  D    + ++ R  +   RV++
Sbjct: 181 TNIDPEHLDHYGSFDKVREA-FRQFVENVPFYGFGVMCTDHPEVQALVSRIEDR--RVIT 237

Query: 270 VGYQG----KFIHLKKVCAI-------HNKQ---QVTISVEGKDFDFLFPLPGEFQVYNA 315
            G       +F + +   AI        N++   Q  IS      D   P+PG   V NA
Sbjct: 238 YGENAQADVRFTNHRMAGAISEFDVVIRNRKTGGQTAIS------DLRLPMPGRHNVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +G+ +  + + L     V  RF   G+ + G  ++ DY H    +  +LK 
Sbjct: 292 TAAIAVAHELGLSAEAIKKGLSSFAGVKRRFTHTGSWN-GVDVFDDYGHHPVEIAAVLKA 350

Query: 376 IRTITSGRIIVV 387
            R+ T GR+I +
Sbjct: 351 ARSATKGRVIAI 362


>gi|146342500|ref|YP_001207548.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. ORS278]
 gi|146195306|emb|CAL79331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bradyrhizobium sp.
           ORS278]
          Length = 466

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 22/153 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + + +G  +   G   T     +  R+               
Sbjct: 117 IAITGTNGKSTTTALIAHLMRVAGYDTQMGGNIGTAILSLEPPRM--------------- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  HV +E SS+ +D      +    G   N+  DHID H T + Y   K RL   +
Sbjct: 162 ---GRVHV-IEMSSYQIDL--TPSLDPSIGILLNVSEDHIDRHGTIENYAAVKERLVAGV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            P+ + AI+  DD + + +  R   AG RV+ +
Sbjct: 216 KPQGT-AIVGVDDGFCRAIADRLDQAGKRVVRI 247


>gi|69244714|ref|ZP_00602978.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257879366|ref|ZP_05659019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257881768|ref|ZP_05661421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257890192|ref|ZP_05669845.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257893520|ref|ZP_05673173.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|258615774|ref|ZP_05713544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecium DO]
 gi|260558808|ref|ZP_05830997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|293553185|ref|ZP_06673822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|293560474|ref|ZP_06676966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|293568300|ref|ZP_06679624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|294621603|ref|ZP_06700768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|314937871|ref|ZP_07845187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|314941362|ref|ZP_07848255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|314950121|ref|ZP_07853407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
 gi|314951338|ref|ZP_07854392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|314992831|ref|ZP_07858232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|314997991|ref|ZP_07862886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|68196305|gb|EAN10734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257813594|gb|EEV42352.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257817426|gb|EEV44754.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257826552|gb|EEV53178.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257829899|gb|EEV56506.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|260075267|gb|EEW63580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|291589012|gb|EFF20836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|291598768|gb|EFF29820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|291602595|gb|EFF32810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|291605622|gb|EFF35064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|313588003|gb|EFR66848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|313592635|gb|EFR71480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|313596555|gb|EFR75400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|313599785|gb|EFR78628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|313642729|gb|EFS07309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|313643562|gb|EFS08142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
          Length = 453

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 22/190 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   HIDYH T++ Y  AK  L + +  K+   + +       E+ + A     RVL 
Sbjct: 189 TNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILNWNQS----ELQELAQRTKARVLP 244

Query: 270 VGYQGKFIHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +  K +    V A    I+ K++  + +          +PG+  V NAL A  +    
Sbjct: 245 --FSTKEVLEDGVYADDYSIYYKKEKIMEISE------LGVPGKHNVENALAAISVAKLY 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRI 384
           GI +  + E L   H VP R ++VG   +G + Y D   T+  + +M L    T      
Sbjct: 297 GISNEAIRETLHFFHGVPHRTQYVG-EIQGRKFYNDSKATNILATKMALSGFETSK---- 351

Query: 385 IVVFGCGGDR 394
           +V+   G DR
Sbjct: 352 VVLLAGGLDR 361


>gi|221202515|ref|ZP_03575545.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
 gi|221208163|ref|ZP_03581168.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221172066|gb|EEE04508.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221177610|gb|EEE10027.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 126/312 (40%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    ++   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARAQRVPIVQRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG
Sbjct: 208 PFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREG 264

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR 354
           +     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G    + 
Sbjct: 265 RTPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTAD 324

Query: 355 GGRIYV--DYAH 364
           GGR  +  DY H
Sbjct: 325 GGRYTLIDDYGH 336


>gi|213691748|ref|YP_002322334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|254766039|sp|B7GQ76|MURD_BIFLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|213523209|gb|ACJ51956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 481

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 102/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLC- 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 159 --------------VELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSK 202

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F         AI+Y A DA   E+   A  A GCR   VG+              G  +
Sbjct: 203 VFH----NAKHAIVYNAQDAKVSELAAEAQTAEGCR--KVGFTLEAPQAGQIGIEDGWIV 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + V ++    DF  L    G      V +AL A  L + +G D    L+
Sbjct: 257 DRSGVAGGAVGEPVRLAAI-TDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALK 315

Query: 335 HLEKLHVVPGRFEFVGTN-SRGGRI-YVDYAHTSN 367
            L        R E V      GG + +VD +  +N
Sbjct: 316 ALTSFKPGGHRIETVAEAVVEGGSVRFVDDSKATN 350


>gi|329901108|ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549207|gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 464

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 136/359 (37%), Gaps = 26/359 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR   AG +FVA+ G K D H F+        + +      ++           P 
Sbjct: 26  ISTDSRTAPAGSLFVALRGEKFDAHKFM--------DGLAARGVAAVVVERVPKGMEIPA 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTS 151
           L+V +TR  L   A     +    ++ VTG++GK++V   +  I   + G   F     +
Sbjct: 78  LIVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEMLAAILGTALGADHF----LA 133

Query: 152 TISSFAQDNRLTTPSPIYL--AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T  +F  +N +  P  +    A   + +   G+ H    A    + Q  L       G  
Sbjct: 134 TRGNF--NNDIGVPLTVLRLHAGCRAAVIELGMNHPGEIAQLSMIAQPTL-------GLV 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268
            N  R+H ++  + +A       +    LP    A+  ADD Y+      A   G R V+
Sbjct: 185 NNAQREHQEFMVSVEAVAKENGAVISA-LPANGIAVFPADDPYAPLWRGLATAIGQRKVM 243

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G+           A     ++ +    + F       G+  V NAL A    + IGI 
Sbjct: 244 TFGFSDDADVSCSWKADGFGSELQVRAGERTFTVKVDAAGQHNVRNALAAIACALGIGIG 303

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              ++  L     V GR +     S    I   Y    +S+   ++ +    S R++V+
Sbjct: 304 IDAIVRGLAAFAPVNGRLQRKHAASGAQVIDDTYNANPDSVRAAIEVLAQAPSPRVLVL 362


>gi|291533194|emb|CBL06307.1| UDP-N-acetylmuramate--L-alanine ligase [Megamonas hypermegale
           ART12/1]
          Length = 393

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 147/381 (38%), Gaps = 53/381 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR---LYGKHPENILAVTG 122
           +G EA+V+SSA         I  + P LV     K L LF       Y  +    +AV G
Sbjct: 46  EGKEALVLSSA---------IHQDNPELVAAKA-KGLKLFHRSDILAYLLNDAKGIAVAG 95

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
             GK++ +S +  + + +     ++ PT  I  F            YL        S  +
Sbjct: 96  AHGKTTTSSMISVVLEHA-----KVDPTILIGGFVD----------YLKGNAKLGKSDYL 140

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              + E+    L  +    +       TN+  DH+D++ + +    A ++  + L  +  
Sbjct: 141 VAEADESDGSFLKFYPKIAV------ITNIEDDHMDHYGSMENIIKAFIQFVQNLDKETG 194

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF- 300
            A++  D+   + +  +      + +S        ++ K   I       T+  +G+   
Sbjct: 195 LAVLCFDNENIRNIADKVDR---KYISYALDHDADYMAKDIKIDGPHTSFTVIYKGEVLG 251

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    +PG+  V NAL    +C  +G+    + E  +       RF+   T  R   +++
Sbjct: 252 DVALNIPGKHNVLNALATIAVCHHMGLSIEEIAEGFKVFSGTKRRFQ---TKFRNENVWI 308

Query: 361 --DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTD 417
             DYAH    ++  +K  +     R+IV F      R Q  +   G   +  AD+ ++TD
Sbjct: 309 VDDYAHHPTEIQTTIKAAKQTNPKRLIVAFQPHRYSRTQLLQKEFGSCFVG-ADVLVLTD 367

Query: 418 DNPRSEDPEKIRAEIIHGIPG 438
               SEDP       I GI G
Sbjct: 368 IYAASEDP-------IEGISG 381


>gi|153835403|ref|ZP_01988070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
 gi|148868059|gb|EDL67234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
          Length = 437

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 117/309 (37%), Gaps = 67/309 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL+   +G    I   A D                 
Sbjct: 110 VIAITGSNGKSTVTDLTGVMAKAAGLT---VGVGGNIGVPALD----------------- 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-- 234
           L  QG     +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F  
Sbjct: 150 LLEQGADLYVLELSSFQLETTS--SLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDN 207

Query: 235 ----------EELLP-KESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                     +E  P  E+P + +  D  AY  E                         +
Sbjct: 208 AELAVVNRDDQETFPDTETPLVTFGSDEQAYGLEADGN---------------------R 246

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              + + Q+V  S E K       L G+  + NALV   L  A  +D    L  L+    
Sbjct: 247 TWLLDHGQRVIASDELK-------LVGKHNLANALVVLALLKAADVDYHKSLNALKTYTG 299

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRP 400
           +  R + V  N RG +   D   T+ +  M   +    T    ++V G G   D    +P
Sbjct: 300 LTHRCQVVADN-RGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKP 358

Query: 401 IMGKIALDL 409
           I   + L L
Sbjct: 359 IFATLNLQL 367


>gi|222112151|ref|YP_002554415.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Acidovorax
           ebreus TPSY]
 gi|221731595|gb|ACM34415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax ebreus
           TPSY]
          Length = 632

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 36/162 (22%)

Query: 90  TPILVVDNTRKF-----LSLFASRL------YGKHPENILAVTGTSGKSSVASF----VQ 134
            P+++    R+      L L+A  L       G  P  +LA+TGT+GK++V S     V+
Sbjct: 212 APVVIAARARQISVEGELGLYAQALRELRAGQGYAPA-VLAITGTNGKTTVTSLTGLLVE 270

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
              +R  ++   IGPT  + + AQ     T   +++                +E SS  L
Sbjct: 271 CADKRVAVAG-NIGPT-LLDTLAQHIDAGTLPEVWV----------------LELSSFQL 312

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           D   + G +  A +  N+ +DH+D+H + QAY  AK R+F E
Sbjct: 313 DG--VQGFEPTAAAVLNITQDHLDWHGSLQAYAQAKGRIFGE 352


>gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 454

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 16/142 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 26  EIHGVCIDSKNIKEGNLFVPIIRVK-DGHGYVKEAMDNGAVASLWKKSY------GTPPK 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC-------QRS 140
             PI+ VD+T   L   A + Y K  +  ++ +TG++GK++V   +  I        +  
Sbjct: 79  GIPIIFVDDTLFALQQLA-QFYRKGLDVKVIGITGSNGKTTVKDIISTILSTTHRVHKTK 137

Query: 141 GLSSFQIGPTSTISSFAQDNRL 162
           G  + QIG   TI    +D   
Sbjct: 138 GNFNSQIGLPLTILEMKRDTEF 159


>gi|242238098|ref|YP_002986279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya
           dadantii Ech703]
 gi|242130155|gb|ACS84457.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech703]
          Length = 437

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 111/256 (43%), Gaps = 44/256 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   + +G    I                   AL+ 
Sbjct: 106 IVAITGSNGKSTVTTLVGEMARAAG---WAVGVGGNIG----------------LPALAL 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+  R   +   A +  N+  DH + Y    Q Y  AK+R++E
Sbjct: 147 LKQESQLYV-LELSSFQLETTR--SLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                 +  I+ ADDA +  +      A  R LS G      HL       N+QQ  + +
Sbjct: 204 H----ANVCIVNADDALTMPI----RGADPRCLSFGVDVGDYHL-------NRQQGEVWL 248

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             K    L      L G+    NAL A  L  A+GI  A  L  L     +P RF+ V  
Sbjct: 249 RVKGERVLNTREIKLTGQHNYTNALAALALADAVGIPRASALTALTTFTGLPHRFQLV-M 307

Query: 352 NSRGGRIYVDYAHTSN 367
           + +G R +V+ +  +N
Sbjct: 308 DGKGVR-WVNDSKATN 322


>gi|124026491|ref|YP_001015606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL1A]
 gi|123961559|gb|ABM76342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL1A]
          Length = 469

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 42/243 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK++V + +  I +                     N L T     + KALS +
Sbjct: 121 IGITGTNGKTTVTNMLNHILKL--------------------NNLNTDMGGNIGKALSKI 160

Query: 178 SSQGVTHVSVEASSHGLD--QHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + + + + + E +   L+    +++G   +A   G +T    DH++ H   ++YF  K  
Sbjct: 161 ALENMKNNNQELNWLVLELSSFQIEGSPKVAPTIGIWTTFTPDHLERHNDIESYFKIKRS 220

Query: 233 LFEELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHN 287
           L E    K S  I  +DD +    ++ + +    G    S    YQ KF   +K     +
Sbjct: 221 LLE----KSSIRIYNSDDQFLSSKRKELPKGIWVGTNQQSFYSEYQ-KFWIDQKGYIFED 275

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K+Q+  S        +  +PG+  + N L+       IG+D + + + ++    +P R E
Sbjct: 276 KKQLFHSS-------ILKIPGKHNLQNLLLVIAAAREIGLDDSSIAKSIKSFRSIPHRLE 328

Query: 348 FVG 350
           ++G
Sbjct: 329 YLG 331


>gi|87199156|ref|YP_496413.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|109892716|sp|Q2G994|MURC_NOVAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|87134837|gb|ABD25579.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 474

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 114/283 (40%), Gaps = 34/283 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AV GT GK++  S V  +    G+    I     I+S+  + RL     +      
Sbjct: 108 KSTVAVAGTHGKTTTTSMVACLLDAGGIDPTVIN-GGIINSYGSNARLGDSDWMV----- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RLDG   +    TN+  +H+D++ + +   +A +   
Sbjct: 162 ------------VEADESDGSFLRLDGTLAV---VTNIDPEHLDHYGSFERVKSAFVEFI 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
           E + P    A++  D    + ++ +  +   RV++ G+  +  +  + V  I    + T 
Sbjct: 207 ENV-PFYGAAMLCIDHPEVQAIIPKVRDR--RVVTYGFSAQADVRGEGVTPIPGGNRFTA 263

Query: 294 SVEGKDFDFL------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  +D  F        P+PG   V NAL A  + + +G+   L+     K   V  RF 
Sbjct: 264 VLRQRDGSFRRIEGIELPMPGRHNVQNALAAVAVAVEMGVSDELIRGGFAKFGGVKRRFT 323

Query: 348 FVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
            VG    G G + +  DY H    +  +L   R    GR+I V
Sbjct: 324 KVGEVDIGSGAVTIIDDYGHHPVEIRAVLAAAREGVQGRVIAV 366


>gi|29840626|ref|NP_829732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
 gi|29834976|gb|AAP05610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
          Length = 448

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 168/422 (39%), Gaps = 48/422 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +Q ++ +D+  L+     +P     +KI+ V+ DSR ++ G +F A+ G   DGH F+  
Sbjct: 1   MQSILLEDWVSLMLSDVKYPRS--GKKISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKH 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A VVS  Y    F         +++V++  + L              I+ +TG
Sbjct: 59  AAQAGAVAAVVSKDYCGDSFGLE------LIIVNDPTEALKEAGENQSHLFQGTIVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++   F       S +      P S       +++LT P  + +A       ++  
Sbjct: 113 SIGKTTTKVFANTFL--SSVYKVYASPKSY------NSQLTVPLSLLMADG-----NEDF 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ--QAYFNAKMRLFE----E 236
             + +  S  G  +  L  ++      TN+   H      +  Q     K R+ +    +
Sbjct: 160 IILEMGVSEPGNMKDLLSIVEPEVAVITNVVDQHAMNFSDKGIQGIAEEKGRILQNSRVQ 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LLPK+SP        +    +K+A ++     +   +    + K +     K  V IS  
Sbjct: 220 LLPKDSP--------WYPHFIKQASSSEKFSFAFHNETADFYYKAI----RKDSVIISTP 267

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D DF    P +    N L++  L   + +    ++     L + P RFE    + R G
Sbjct: 268 EGDIDFAISFPYQPAYSNLLISLSLAWLLEVPVDRIVHSCCDLQLPPMRFE---QSMRNG 324

Query: 357 RIYVDYAHTSNSLEMI--LKNI-RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
              ++ A+ +    MI  L  I     SG+II++ G     G+  +    I+ K AL  A
Sbjct: 325 IQVINDAYNACPEAMIAALDAIPHPSESGKIILILGHMAELGNYSEEGHTIVAKKALSKA 384

Query: 411 DI 412
            I
Sbjct: 385 SI 386


>gi|331701059|ref|YP_004398018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128402|gb|AEB72955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 459

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 113/288 (39%), Gaps = 51/288 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           I+ VTG++GK++  + + +I  +           +  I  T T      D+ +      +
Sbjct: 114 IIGVTGSNGKTTTVTMITEILNQERAKGHAYAAGNIGISATETAKKATADDTIVMELSSF 173

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +   +  L      HV+V                      TN+  +H+DYH+T++ Y NA
Sbjct: 174 MLLGIKTLHP----HVAV---------------------LTNIFSNHLDYHKTRENYVNA 208

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHN 287
           KMR+     P++   + +  D + + + KR   +  +V+      +      +K   ++ 
Sbjct: 209 KMRITMNQTPEDFFVVNFDSDEW-RGLSKR---SAAKVVPFARTTEIDKGAYEKNGKLYY 264

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  ++ E         +PG+  V NAL A      +G  +  +   LE    V  R +
Sbjct: 265 NDEFIMNAED------IKVPGKQNVENALAAIACAKVLGKSNLAITNVLETFTGVRHRLQ 318

Query: 348 FVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDR 394
           FV   + G + Y D   T   + +M L+        + +V+   G DR
Sbjct: 319 FV-LEANGRKFYNDSKATDIEATQMALEGF-----DKPVVLLAGGLDR 360


>gi|170696717|ref|ZP_02887832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
 gi|170138380|gb|EDT06593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
          Length = 475

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 151/375 (40%), Gaps = 36/375 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSATIRSN 89
           VS+DSR    G +FVAI G++ D H F+    A+   A +V+     +S+          
Sbjct: 34  VSTDSRSAGPGDLFVAIKGDRFDAHDFLADVAARNVSAALVARVPGGWSV---------- 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     K    ++AVTG++GK++V   +  I   +      +G 
Sbjct: 84  -PALRVADTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGV 136

Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
            + +++    +N +  P  ++   A   L+   V  + +   +H  +   L  I +    
Sbjct: 137 DARLATAGNFNNDIGLPLTLFRLNAAHRLA---VVELGM---NHPGETSLLAKIAEPTVA 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R+
Sbjct: 191 VVNNAQREHQEFMATVEAVALEHASVIHALTP-DGIAVFPADDAYAS--IWRVAATGNRI 247

Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +       +      V    + + ++I       +    + G    +NAL A    +A G
Sbjct: 248 VDFALNTAERTTEAAVTGTFDGKVLSIQTPEGHTNITLQVLGNHNAHNALAATSAALAAG 307

Query: 327 IDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
           +    +   LE    V GR +       +  G   +D  + +N  S+   +  + +  S 
Sbjct: 308 VSLDAIKRGLESFGAVKGRLQVKHAALGTLAGATVIDDTYNANPDSMRAAIDVLASHASP 367

Query: 383 RIIVVFGCGGDRDQG 397
           R++V+   G   D G
Sbjct: 368 RVLVMGDMGEVGDNG 382


>gi|110597720|ref|ZP_01386004.1| Cytoplasmic peptidoglycan synthetase-like:Cytoplasmic peptidoglycan
           synthetases-like [Chlorobium ferrooxidans DSM 13031]
 gi|110340627|gb|EAT59107.1| Cytoplasmic peptidoglycan synthetase-like:Cytoplasmic peptidoglycan
           synthetases-like [Chlorobium ferrooxidans DSM 13031]
          Length = 476

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 111/281 (39%), Gaps = 35/281 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + V GT GK++  S V  + +  GL   F +G      +F+   R     P    +A  +
Sbjct: 108 IVVAGTHGKTTTTSLVAWLLEHGGLKPGFLVG--GIPENFSMGCR-----PSGRIEAGFF 160

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +S       +          +R D I +I     N+  DH D   + +       RLF  
Sbjct: 161 VSEGDEYDTAFFDKRSKFLLYRPD-IAII----NNIEFDHADIFSSLED-IKRSFRLFVN 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+P+    I+ +DD  + E+  +A    CRV   G         K  A  + + ++++ E
Sbjct: 215 LIPRNGTLIVNSDDPTAMEIASKAF---CRVERFGL--------KTDAEWSARNISVAHE 263

Query: 297 GKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              FD  +          PL G + + NAL A    +  G+    + + +        R 
Sbjct: 264 TSTFDLFYKGELQGSITVPLFGNYNIMNALAATAAAVTAGLPFEAIAKAMPLFLRPKRRM 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           E +GT      +  D+AH   ++ + L+ I  + SGR +V 
Sbjct: 324 EIIGTYPGNITLIEDFAHHPTAIRVTLEAIAELYSGRRVVT 364


>gi|23465882|ref|NP_696485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum NCC2705]
 gi|30316056|sp|Q8G4Q6|MURD_BIFLO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23326585|gb|AAN25121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum NCC2705]
          Length = 481

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 102/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLC- 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 159 --------------VELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSK 202

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F         AI+Y A DA   E+   A  A GCR   VG+              G  +
Sbjct: 203 VFH----NAKRAIVYNAQDAKVSELAAEAQTAEGCR--KVGFTLEAPQAGQIGIEDGWIV 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + V ++    DF  L    G      V + L A  L + +G D    L+
Sbjct: 257 DRSGVAGGAVGESVRLAAI-TDFTHLAEPDGSLYPHLVADVLTALALVLGLGADRDTALK 315

Query: 335 HLEKLHVVPGRFEFVGTNS-RGGRI-YVDYAHTSN 367
            L        R E V   +  GG + +VD +  +N
Sbjct: 316 ALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATN 350


>gi|225388505|ref|ZP_03758229.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
 gi|225045436|gb|EEG55682.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
          Length = 462

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 88/428 (20%), Positives = 165/428 (38%), Gaps = 68/428 (15%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A I  + P  +    +    L  +   G+   N    +A++GT GK++  S V ++  
Sbjct: 78  YTAAIHEDNPEFIAAREKGLPMLSRAEFLGEMMRNYKQSIAISGTHGKTTTTSMVAEM-- 135

Query: 139 RSGLSSFQIGPTSTISSFAQD--NRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLD 195
              L +  + PT ++    +D    +   SP +++ +A  Y +S    + ++E       
Sbjct: 136 ---LLAGDMDPTVSVGGILKDIGGNIRVGSPDLFVTEACEYTNSFLSFYPTLEV------ 186

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                          N+  DH+D+ +  +       RLF + LP++   +I   ++  + 
Sbjct: 187 -------------VLNIEADHLDFFKDLED-IRHSFRLFAQKLPQDGLLVI---NSGIEN 229

Query: 256 VMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPG 308
           + +      CR+++ G      Y  + I   +      +    + V+GK  + +   + G
Sbjct: 230 LQQITDGLKCRIVTFGSSPDSHYTAQNITYDEFA----RPSYDLIVQGKLVNRVSLGVTG 285

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  VYN+L A  + + +G+    ++  L+       RFE  G    G  I  DYAH    
Sbjct: 286 EHNVYNSLAAIAVVMELGVGFEAIMAGLKNFSGTDRRFEKKGEIG-GVTIIDDYAHHPQE 344

Query: 369 LEMILKNIRTITSGRIIVVFG------CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           ++  L   +     ++  VF            DQ    +     + LADI    + +   
Sbjct: 345 IKATLAAAKNYPHRKLWCVFQPHTYTRTKAFLDQFAETLAAADEVILADIYAARETDTLG 404

Query: 423 EDPEKIRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
                I  +I      +H IP F E    IE     +E     D+L+  G G     IV 
Sbjct: 405 VSSADIARKIQELGTPVHFIPSFDE----IETF--ILENCMNGDLLITMGAG----DIVK 454

Query: 477 NGEKKMSV 484
            GEK + +
Sbjct: 455 VGEKLLGM 462


>gi|163782320|ref|ZP_02177318.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882353|gb|EDP75859.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 467

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 49/284 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G+ GK++  S V  I + +G       PT  I    Q  RL + + +         
Sbjct: 110 IAVSGSHGKTTTTSMVAHILEEAGFD-----PTVIIGGILQ--RLGSNAKL--------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   VS    S G        + +I    TN+  +H+DY++  +    A  + F   
Sbjct: 154 -GRGDLLVSEADESDGSFLKLSPAVNVI----TNIDLEHMDYYRDLEDIVAAFAK-FAGS 207

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P     +  ADD     V     +   ++++ G +      K+   +  +    +S+EG
Sbjct: 208 VPFYGFCVANADDP---NVRNATSSVTKKLITFGIE------KEADVVGTE----LSIEG 254

Query: 298 KDFDFLFPLPGE------------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             + F     GE              VYNAL A  + + +G+   +V   LE  H    R
Sbjct: 255 GRYAFGVVFKGERLGKIRLSIGGRHNVYNALAATAVSLELGVPFEVVRSALEGFHNAERR 314

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
            E  G    G  IY DY H    +  ++  +R +  G R+++VF
Sbjct: 315 MELKGFFG-GVPIYDDYGHHPTEIRAVVSALREMYPGRRLVMVF 357


>gi|222832328|gb|EEE70805.1| predicted protein [Populus trichocarpa]
          Length = 140

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 33/147 (22%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLT 163
           S  +G  P  +L +TGT+GK++V S   Q+ + +GL    +  IGPT   +     +  T
Sbjct: 7   SAAHGYRP-TVLGITGTNGKTTVTSLTGQLLEHAGLRVAVAGNIGPTLLDTLTQAIDAET 65

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGSFTNLGRDHIDYH 220
            P    L                       L   +LDG+++    A +  N+ +DH+D+H
Sbjct: 66  LPQAWVLE----------------------LSSFQLDGVQMFEPTAAAVLNITQDHLDWH 103

Query: 221 QTQQAYFNAKMRLFEE----LLPKESP 243
            + +AY +AK  +F      +L +E P
Sbjct: 104 GSLRAYADAKACIFGSSGTMVLNREDP 130


>gi|21230200|ref|NP_636117.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769810|ref|YP_244572.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993025|ref|YP_001905035.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|23821875|sp|Q8PCJ9|MURC_XANCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81304236|sp|Q4UQX1|MURC_XANC8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082517|sp|B0RVA4|MURC_XANCB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21111738|gb|AAM40041.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575142|gb|AAY50552.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734785|emb|CAP52995.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris]
          Length = 477

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 125/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T + G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTASGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|91215145|ref|ZP_01252117.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186750|gb|EAS73121.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 427

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 154/372 (41%), Gaps = 62/372 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R I++  +F A+ G+  DG+L+  QA+ +GA   V+         +  ++ +  I
Sbjct: 17  ICTDTRKIESNCLFFALKGDNFDGNLYADQALEKGASFAVID--------NPDLQGDRKI 68

Query: 93  LV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LV  V  T + L+ F  R   K P  I+A+TG++GK++    V ++  +     F++  T
Sbjct: 69  LVKNVLATLQDLAHF-HRKQLKIP--IVAITGSNGKTTTKKLVSEVLSK----KFKVRAT 121

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206
                   +N +  P  +     LS+ +   +  + + A+     Q  ++ +  IA    
Sbjct: 122 KG----NLNNHIGVPLTL-----LSFTAELDLGIIEIGANH----QKEIESLCKIAEPNY 168

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNAG 264
           G  TN G+ H++     +     K  L++ L+  +       DD     K V  + ++ G
Sbjct: 169 GYITNFGKAHLEGFGGVEGVIKGKSELYDYLIHHDGLIFFNRDDDIQVKKAVNYKNYSIG 228

Query: 265 ------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                 CRV  +     F+ L +   +  K Q               L GE+   N   A
Sbjct: 229 EKPLSDCRVTFMD-ANPFVEL-EYSHLQIKSQ---------------LIGEYNFKNIAAA 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
            G+    G+    + E +E       R + +  N    +I +D Y     S++  L++ +
Sbjct: 272 IGVGRYFGVGKDEIKEAIENFEAEEMRSQVIEKNDL--KILLDAYNANPTSMKAALESFK 329

Query: 378 TITSGRIIVVFG 389
            ++S    V+ G
Sbjct: 330 KMSSQSQTVILG 341


>gi|167580474|ref|ZP_02373348.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           TXDOH]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 125/312 (40%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYG-KHPENILAVTGT 123
           +GA A+VVS+A         +RS+ P +L     R  +   A  L      +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    ++S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297
           P    A++  DDA  ++++         V+  G+     +  + V A   +   T+  EG
Sbjct: 208 PFYGSAVVCIDDANVRQIVPLISKP---VVRYGFAADAQVRAENVEARDGRMHFTVLREG 264

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
           ++    +  LPG   V NAL A  +   + +    + + L + + V  RF+  G   + G
Sbjct: 265 REPLPVVLNLPGLHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEIPAAG 324

Query: 356 GRIYV---DYAH 364
           G  Y    DY H
Sbjct: 325 GGAYTLIDDYGH 336


>gi|260434510|ref|ZP_05788480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
 gi|260412384|gb|EEX05680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
          Length = 459

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 24/223 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR +QAG  FV +VG + DGH F+ +      +A VVS +++    S  +   
Sbjct: 26  VGRVCTDSRQLQAGDFFVPLVGERFDGHHFLDKLTEHKVQAAVVSRSWTEPFPSGLLHWR 85

Query: 90  TPILVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                VD+T       A    R  GK    ++AVTG++GK++    +     R+ L+   
Sbjct: 86  -----VDDTLLAYQQLALLHRRALGK---PLVAVTGSAGKTTTRELI-----RAALA--- 129

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             P   I +   +N      P+ +  A +  ++  V  + +  S       R     L  
Sbjct: 130 --PMGAIQASEANNNNDVGVPLTVLGATAADAAL-VIEMGMRGSGEIERLSRCTEPDLAV 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              TN+G  HI    +++A   AK  +   L PK +  I   D
Sbjct: 187 --ITNIGTAHIGCLGSREAIAAAKCEITAGLHPKGTVVIPAGD 227


>gi|239931807|ref|ZP_04688760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291440176|ref|ZP_06579566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291343071|gb|EFE70027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 472

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 28/170 (16%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL        LAVTGT+GK++    +  I + +GL +  +G                
Sbjct: 106 LAWRLRRPDSAPWLAVTGTNGKTTTVQMLASILEAAGLRTAAVGNIG------------- 152

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + L  A+  L  +    ++VE SS+ L  H    ++  +    NL  DH+D+H + Q
Sbjct: 153 ---VSLLDAV--LGEEEYDVLAVELSSYQL--HWAPSLRAHSAVVLNLAPDHLDWHGSLQ 205

Query: 225 AYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY 272
           AY   K R++E        A +Y  AD A    V +     GCR  +VG+
Sbjct: 206 AYAADKGRIYE----GNRVACVYNVADKATEDLVREADVEEGCR--AVGF 249


>gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
          Length = 464

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 52/255 (20%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            +V+ DSR +  G +FVA+ G + DGH F+             ++A +    + T R + 
Sbjct: 27  GKVTVDSRAVAPGDLFVAVPGERVDGHDFL------------TAAAAAGAVAALTTRPDG 74

Query: 91  --PILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS- 143
             P +VVD     L   A    +RL G     I  +TG+SGK+S    + Q+   +G + 
Sbjct: 75  ALPCVVVDEPVAALGRLAAAVHTRLAGGDLVTI-GITGSSGKTSTKDLLGQVLATAGATV 133

Query: 144 ------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                 +  IG   T+    +D R            +  + S+G  H++           
Sbjct: 134 SPPGSYNNDIGLPLTVLDADEDTRFL----------VLEMGSRGRGHIA----------- 172

Query: 198 RLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           RL  + +   G   N+G  H+    +      AK  L E  LP E  A++ ADD     V
Sbjct: 173 RLCRVARPDVGVVLNVGSAHLGEFGSADGIAVAKGELVEA-LPAEGTAVLNADD---PRV 228

Query: 257 MKRAHNAGCRVLSVG 271
           +  A     RV++ G
Sbjct: 229 IGMAPRTRARVVTTG 243


>gi|221213276|ref|ZP_03586251.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
 gi|221166728|gb|EED99199.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 126/312 (40%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    ++   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARAQRVPIVQRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG
Sbjct: 208 PFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREG 264

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR 354
           +     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G    + 
Sbjct: 265 RAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTAD 324

Query: 355 GGRIYV--DYAH 364
           GGR  +  DY H
Sbjct: 325 GGRYTLIDDYGH 336


>gi|163751825|ref|ZP_02159041.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
 gi|161328310|gb|EDP99471.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
          Length = 489

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 127/320 (39%), Gaps = 46/320 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS+A   ++          I VV        L   R       + +AV GT GK+
Sbjct: 81  ADVVVVSTAIDAENPELVAARKLRIPVVQRAEMLAELMRYR-------HGVAVAGTHGKT 133

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  S +  +  ++G   +F IG    ++S   + RL   S   +A+A     S+L  Q +
Sbjct: 134 TTTSLIASVYAQAGRDPTFVIG--GLLNSAGTNARLGH-SRYLIAEADESDASFLHLQPM 190

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V                        TN+  DH+D +        +    F   LP   
Sbjct: 191 VSV-----------------------VTNIEADHMDTYGGDFEKLKSTFIDFLHNLPFYG 227

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDF 300
            A++  DD   +E++ +    G +++S G+ +   I          +   T+  EG  D 
Sbjct: 228 VAVMCIDDPVIRELLPK---VGRKIVSYGFSEDADIQALNFVQQGYRSHFTLRREGVADI 284

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--NSRGGRI 358
           + +  LPGE  V NAL A  +     I+   ++  L +   +  RF+ +G+   S+G  +
Sbjct: 285 EVMVNLPGEHNVLNALAAIAVATEDEIEDEAIVRALAEFEGIGRRFQQLGSFATSKGEVM 344

Query: 359 YV-DYAHTSNSLEMILKNIR 377
            V DY H  + +   +K  R
Sbjct: 345 LVDDYGHHPSEVTATIKAAR 364


>gi|150020782|ref|YP_001306136.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho melanesiensis
           BI429]
 gi|149793303|gb|ABR30751.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho melanesiensis
           BI429]
          Length = 431

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 27/262 (10%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +Y     ++   ++ S  G + +  D + +     TN+  DHI+  ++ Q Y       F
Sbjct: 144 NYRKGGNISVFEMDESQPGFENYNADFLII-----TNIRYDHIENFESLQHY----NYCF 194

Query: 235 EELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           E+        I  +++   K  +     NA  ++LS+   G             KQ+V I
Sbjct: 195 EKSCKNAKICISNSENNIEKNSITFGLKNADYKILSIEKMGY------------KQKVKI 242

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  +FL  +PG   V NAL    LC  +G + + VL+  E   V+PGR  F    +
Sbjct: 243 LTPYGIKNFLLNVPGIHNVLNALSVIALCFELGYEKSAVLKAFEDF-VLPGR-RFQIYRN 300

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI--MGKIALDLAD 411
               I  DY+HT   ++ +L   + +   + I +        + KR      K AL +AD
Sbjct: 301 EEITIIDDYSHTPIEIKSLLLTAKEVFKNKKIQIIFQPHRFTRLKREWKEFAK-ALSIAD 359

Query: 412 IAIVTDDNPRSEDPEKIRAEII 433
              +T+     E   KI A+II
Sbjct: 360 KVYITEVYGAFEKVGKISAKII 381


>gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 460

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 16/138 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DS+ I+ G +FV I+  K DGH ++ +AI  GA A +   +Y       T     PI
Sbjct: 36  VCIDSKKIKEGNLFVPIIRVK-DGHDYVKEAIDNGAVASLWKKSY------GTPPKGIPI 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC-------QRSGLSS 144
           + VD+T   L   A + Y K  +  ++ +TG++GK++V   +  I        +  G  +
Sbjct: 89  IFVDDTLFALQQLA-QFYRKGLDVKVIGITGSNGKTTVKDIISTILSTTHRVHKTKGNFN 147

Query: 145 FQIGPTSTISSFAQDNRL 162
            QIG   TI    +D   
Sbjct: 148 SQIGLPLTILEMKRDTEF 165


>gi|161526004|ref|YP_001581016.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|189349279|ref|YP_001944907.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|229486476|sp|A9AI95|MURC_BURM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160343433|gb|ABX16519.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans ATCC
           17616]
 gi|189333301|dbj|BAG42371.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia multivorans ATCC
           17616]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 126/312 (40%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    ++   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARAQRVPIVQRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG
Sbjct: 208 PFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREG 264

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR 354
           +     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G    + 
Sbjct: 265 RAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTAD 324

Query: 355 GGRIYV--DYAH 364
           GGR  +  DY H
Sbjct: 325 GGRYTLIDDYGH 336


>gi|239832308|ref|ZP_04680637.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
 gi|239824575|gb|EEQ96143.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
          Length = 468

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  +   R+++
Sbjct: 181 TNIDPEHLDHYGNFDA-VRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDR--RIIT 237

Query: 270 VGY----QGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLC 322
            G     + +F++ +   A      V  S +G+     D   P+PG+  V NA  A  + 
Sbjct: 238 YGQNPQAEVRFVNHRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGQHNVSNATAAIAVA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI +  +   L     V  RF   GT + G  I+ DY H    +  +LK  R    G
Sbjct: 298 HELGISADDIRRGLGSFGGVKRRFTHTGTWN-GVEIFDDYGHHPVEIRAVLKAAREAAKG 356

Query: 383 RIIVV 387
           R+I +
Sbjct: 357 RVIAI 361


>gi|325962950|ref|YP_004240856.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469037|gb|ADX72722.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 458

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 149/380 (39%), Gaps = 55/380 (14%)

Query: 65  AQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117
           A GA   V  +A +L D       + IR + P LV         L  S+        + +
Sbjct: 55  AAGARIAVGYAAANLGDAQTVVAGSAIRPDNPELVAAREAGLPVLHRSQALAATMGGDTV 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + V GT GKS+  S V  + Q +GL  SF IG                        AL  
Sbjct: 115 VTVAGTHGKSTTTSMVTILLQGAGLDPSFAIGAN--------------------VPALGV 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++ G + + V A +   D   L+    IA   TN+  DH+D++ T +A + +  R F  
Sbjct: 155 NAAHGTSGIFV-AEADESDGSFLNYRPRIA-VVTNVEPDHLDHYGTAEAVYESFDR-FTG 211

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           LLP +   +  ADDA +  + +R    G  RVL  G   +      V          +S 
Sbjct: 212 LLPADGLLVACADDAGALALAERTRKRGNTRVLLYGTSAE---ADLVLHDGGPGDTAVST 268

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               +     +PG     NA  A  + + +G+D       L        RFE  G  +RG
Sbjct: 269 PSGRYPLALQVPGRHNALNAAAAFAVALELGVDPGAAAAALAHFSGASRRFELKG-EARG 327

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI--------- 405
            R++ DYAH    +   L   R++  G ++ V+F         +  +  +          
Sbjct: 328 VRVFDDYAHHPTEVRAALAAARSVAGGHKVHVLF---------QPHLFSRTREFAQEFAD 378

Query: 406 ALDLADIAIVTDDNPRSEDP 425
           AL+LAD A+V D  P  EDP
Sbjct: 379 ALNLADTALVLDIYPAREDP 398


>gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
 gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
          Length = 452

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 145/355 (40%), Gaps = 32/355 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS ++R ++ G +F+   G   +GH ++  AI  GA      SA   Q        +
Sbjct: 23  ITGVSINTRTLKPGDLFIPFRGENVNGHKYVRSAIELGA------SASLWQRDEPGAPED 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L V++    L   A     +    ++ +TG++GK+S    V  + +      F++  
Sbjct: 77  LPLLFVEDCEVALQEMARAYRDELSAMVIGITGSNGKTSTKDLVASVLK----PYFKV-- 130

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T  +F  +N+L  P  I     LS      V  + +  S  G  +   +  +      
Sbjct: 131 QKTPGNF--NNQLGLPLTI-----LSLEEDTKVAVLEMGMSGRGQIEFLSELARPDYAII 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H+    +++A   AK  +   L  ++   + Y  D    +    A   G   +S
Sbjct: 184 TNIGEAHLQDLGSREAIAEAKFEITAGL--QQHGKLFYDGDEPLLQPFMEAFPQG---VS 238

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G+     + +  + A  +     +S  G  D  F  P+ GE QV N L A  + +  G+
Sbjct: 239 FGFDDNNELTVTDIKATESGSSFMVS--GIIDAAFTIPVLGEHQVKNTLAAILVALEAGL 296

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMILKNIRTIT 380
               + + L+   +   R + +  ++  G I+++ A+ +  +S+   L  IR  T
Sbjct: 297 SEEQIRKSLKDAALTDMRMQMIQADN--GAIFINDAYNAAPSSMNAALNFIRETT 349


>gi|148997721|ref|ZP_01825285.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|168575141|ref|ZP_02721104.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|307068295|ref|YP_003877261.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756220|gb|EDK63262.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|183578837|gb|EDT99365.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|306409832|gb|ADM85259.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDML 118


>gi|145220114|ref|YP_001130823.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206278|gb|ABP37321.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 476

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 71/189 (37%), Gaps = 23/189 (12%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH D   + +       RL   L+P     I+  DD  + EV  +A    CRV + 
Sbjct: 190 NIEFDHADIFSSLEE-IKRSFRLLVNLIPSNGALIVNGDDPVAMEVSSKAL---CRVETF 245

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAG 320
           G       L   C     Q + +   G  FD  +          PL G + + N L +  
Sbjct: 246 G-------LTDGCD-WTAQNIRVEENGSSFDLYYKGGFERRFNAPLFGSYNILNTLASIA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
           +    G+   +  E L +      R E VGT      +  D+AH   ++ + L+ I+   
Sbjct: 298 VATLSGMTLDMTAEGLREFLRPKRRMETVGTYEGNITVIEDFAHHPTAIRVTLEAIKERW 357

Query: 380 TSGRIIVVF 388
              RII  F
Sbjct: 358 PERRIITCF 366


>gi|297571251|ref|YP_003697025.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931598|gb|ADH92406.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 493

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 26/122 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKA 173
           L VTGT+GK++    V+ I Q +GL +  +G    P  T  S    N     +P   A  
Sbjct: 126 LCVTGTNGKTTTVGMVESIVQAAGLRALAVGNVGVPAVTAVSDTSAN-----APQVFACE 180

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS  S Q     S+E +S          I L      NL  DH+++H T++ Y NAK  +
Sbjct: 181 LS--SFQLAATYSMEPTS---------AIVL------NLADDHLEWHSTREEYANAKATI 223

Query: 234 FE 235
           +E
Sbjct: 224 YE 225


>gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
 gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
          Length = 451

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 36/217 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S+DSR +    +FV IVG + + H F+  A+  G          SL          
Sbjct: 26  INRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDGGA--------SLTQEHEQAEGP 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGL 142
            PI+ V +T K +   AS    K    I+ +TG+ GK++    +  +        +  G 
Sbjct: 78  HPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTREMIAHVLKGKYRVFETVGN 137

Query: 143 SSFQIGPTSTISSFAQDNR-------LTTPSPIYLAKAL-----SYLSSQGVTHVSVEAS 190
            + Q+G   T+      ++       ++ P  I +   +     + +++ GV+H+    S
Sbjct: 138 QNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRPNAAVVTNVGVSHIEQMGS 197

Query: 191 SHGLDQHRLD--------GIKLIAGSFTNLGRDHIDY 219
              + + +LD        G+  + G   ++ R HI Y
Sbjct: 198 RDNICREKLDIQNGLPENGVLYLNGD-NDMIRKHIGY 233


>gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 478

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--L 79
           P + +   I+ V+ DSR+++ G +FVA+ G + DGH ++ +A   GA A++V    S  +
Sbjct: 24  PSERKTVTIDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAARAGASAVLVDHEKSACV 83

Query: 80  QDFSATIRSNTPILVVDNTRKFLSL-FASRLYGKHPENI--LAVTGTSGKSSVASFVQQI 136
           +   A   +++ ++V+      ++L   SR +    + +  +AVTG+SGK++    +  +
Sbjct: 84  EGGWAAFATHSGLVVMTVEDPLVALQRLSRWWIDRFDTLVRIAVTGSSGKTTTKELLGSV 143


>gi|15965928|ref|NP_386281.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium meliloti
           1021]
 gi|307308238|ref|ZP_07587947.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
 gi|307319705|ref|ZP_07599130.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|23821882|sp|Q92NM0|MURC_RHIME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15075197|emb|CAC46754.1| Probable UDP-N-acetylmuramate--alanine ligase [Sinorhizobium
           meliloti 1021]
 gi|306894636|gb|EFN25397.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|306901236|gb|EFN31842.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
          Length = 471

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NA  A  +   +GI    +   L     V  RF   G  + G RI+ 
Sbjct: 277 DLRLPMPGRHNVSNATAAVAVAQRLGIKPEDIARGLATFGGVKRRFTLTGEWN-GARIFD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    +  +L+  R    GRI+ V
Sbjct: 336 DYGHHPVEIRAVLRAAREACQGRIVAV 362


>gi|312876350|ref|ZP_07736335.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796844|gb|EFR13188.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 428

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 18/196 (9%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N+  DH++ H T + Y  AKMR+FE  + +    ++  D+  +++++  A   G  
Sbjct: 152 GCILNITPDHLNRHMTMENYIKAKMRIFEN-IDEMGYTVLNYDNNITRDLIGLAK--GNV 208

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLC 322
           ++    + +F ++  V     K  +  + EGK  + +      +PGE  + NAL A    
Sbjct: 209 IVFSKNKSQFENMVFV----EKDTIYFTFEGKTQEVMKKDEIFIPGEHNLENALAAISCT 264

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +  GI+   + + L+    V  R EFV     G + Y D   T+   +   K +R   S 
Sbjct: 265 LPFGIEKDTIEQVLKTFRGVEHRIEFVA-EINGIKFYNDSKGTNT--DAAEKALRAFESP 321

Query: 383 RIIVVFGCGGDRDQGK 398
            I++     G  D+G+
Sbjct: 322 IILI----AGGYDKGE 333


>gi|288929761|ref|ZP_06423604.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288328862|gb|EFC67450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 443

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 131/312 (41%), Gaps = 43/312 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I                  ++L+ 
Sbjct: 104 MVCITGSNGKTTTTSLIYHIFKAAG---YNVGLGGNI-----------------GRSLAL 143

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
             ++G     V E SS  L+   +   K       N+  DH+D Y+   Q Y +AKMR+ 
Sbjct: 144 QVAEGAHEWYVIELSSFQLEN--MYRFKAHIAVLLNITPDHLDRYNYCMQGYVDAKMRIL 201

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L P++   I +ADD   K  +++ ++   RV       +        A     Q+T+ 
Sbjct: 202 QNLGPQDY-FIYWADDPVVKPELQK-YDVSARVCPFAENRE----TGAAAYVADGQITLP 255

Query: 295 VEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 +F  P     LPG+  +YN+L AA    A GI   +V + L     V  R E V
Sbjct: 256 AP---LEFNMPQARLSLPGKHNLYNSLAAALAARAAGIPQNVVEQGLSDFPGVEHRMERV 312

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T    G  Y++ +  +N ++     +  +T+  I+++   G D+     PI   +    
Sbjct: 313 ATMH--GVNYINDSKATN-VDACRYALEAMTAPTILII--GGKDKGNDYEPIKDLVKEKC 367

Query: 410 ADIAIVTDDNPR 421
           A +  +  DN +
Sbjct: 368 AALVYLGADNTK 379


>gi|42524582|ref|NP_969962.1| hypothetical protein Bd3200 [Bdellovibrio bacteriovorus HD100]
 gi|62900538|sp|Q6MIF8|MURD_BDEBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39576791|emb|CAE80955.1| murD [Bdellovibrio bacteriovorus HD100]
          Length = 462

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 62/312 (19%), Positives = 127/312 (40%), Gaps = 31/312 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E I+ +TGT+GK++VA   + I   SG+ ++  G                  P+     +
Sbjct: 113 EPIIGLTGTNGKTTVAKITEAILTESGVKTWVGGANE--------------KPL-----V 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            YL       V +   S  + +H  D        FTNL  +H+D +++ + Y NAK R+F
Sbjct: 154 DYLRLDDKAQVVIAEVSSFMLEH-CDTFNPGNIVFTNLAENHLDRYRSMEEYVNAKRRIF 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQ 290
           +    + + +I+ ADD    E+ +       R+         + + +++     I ++ +
Sbjct: 213 KN-TNQATTSILNADDNAVVELARDPAVQRGRIFYFSRKPALEPQIMNIGGAVNIGDEIR 271

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           V    E + F+     + G+  V N + A       G     V + +     +P R E+V
Sbjct: 272 VRTGPEIESFNIKGMKMRGKHSVENIMAAILASREHGATREAVQKVINTFTGLPHRIEYV 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                GG ++ + +  +N +  +L+ + T      +++   G D +    P+   +   +
Sbjct: 332 --RKVGGVMFYNDSKATN-VHAVLRALDTFDEN--VILIAGGKDTNLNYEPLRTSVKRKV 386

Query: 410 ADIAIVTDDNPR 421
             + +V +   R
Sbjct: 387 KTLILVGEAKER 398


>gi|237785341|ref|YP_002906046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758253|gb|ACR17503.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 489

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 41/199 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATI------RSNTPILVVDNTRKF-------LSLFASR--LYG 111
           G  A+ V  A+S  D ++ I      R +TP+L     +         L+  A R   +G
Sbjct: 60  GGSAMTVEEAHSRLDEASLIVTSPGWRPDTPLLRDAQEQGIPVIGDVELAWCADRDGRFG 119

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           + P   LAVTGT+GK++  S +  +   SG ++  +G                   I +A
Sbjct: 120 E-PRTWLAVTGTNGKTTATSMLASMMVESGAAAEAVGN------------------IGVA 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              +   +  V+ +  E SS  L  H    +   AG   NL  DHID+H +  AY   K 
Sbjct: 161 VGTALTQTPRVSVMVAELSSFQL--HWSPTLTPDAGVVLNLAEDHIDWHGSMDAYAADKA 218

Query: 232 RLFEELLPKESPAIIYADD 250
           R++     + S  ++ ADD
Sbjct: 219 RVY-----RGSVIVVNADD 232


>gi|228914793|ref|ZP_04078402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845112|gb|EEM90154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 252

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 14/138 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       +   
Sbjct: 32  EIHGVCIDSKNMKEGNVFVPIIRVK-DGHEYVKEAMDNGAIASLWKKSY------GSPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------G 141
             PI+ VD+T   L   A     +    ++ +TG++GK++V   ++ I + +       G
Sbjct: 85  GIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKG 144

Query: 142 LSSFQIGPTSTISSFAQD 159
             + QIG   TI    +D
Sbjct: 145 NFNSQIGLPLTILEMKRD 162


>gi|212715556|ref|ZP_03323684.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660923|gb|EEB21498.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
          Length = 480

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 31/163 (19%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   + +TGT+GK+S      ++    GL++  +G                     + K
Sbjct: 102 EPAQWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG--------------------NIGK 141

Query: 173 ALSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           A+S+ +      V  VE SS  L  H  D + L   + TN+  DH+D+H     Y   K 
Sbjct: 142 AVSHAAVDPANDVLCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIDNYAADKA 199

Query: 232 RLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY 272
           ++F  +      A++Y ADD     +   A  A GCR   VG+
Sbjct: 200 KVFHRV----KKALVYNADDERVTRLAFAAETAEGCR--KVGF 236


>gi|311104878|ref|YP_003977731.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8]
 gi|310759567|gb|ADP15016.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8]
          Length = 871

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 150/376 (39%), Gaps = 50/376 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF     G+ P  I+ VTGT+GK+ VA  V ++     LS  + G   +   +    ++ 
Sbjct: 472 LFPEGDAGRIP--IVGVTGTNGKTVVARLVARLLS---LSGKRTGLACSEGLYLDRRQVQ 526

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI---DY 219
                  A     L ++ +    +E  S  +    L   +   G  TN+   DH+   D 
Sbjct: 527 KGDRADFASGTRLLMNRNLDAAVIENDSGVILGQGLAYDRCQVGVVTNIDDADHLGDFDI 586

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           ++T++  FN      + +LP  + A++ A D    E+ + +  A      V + G    L
Sbjct: 587 NETER-MFNVFRTQVDVVLPGGA-AVLNARDPRVVEMAELSDGA------VIFFGIDPAL 638

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGE-------------------FQVYNALVAAG 320
             + A  + QQ   +V  +D D +    G                    FQV N L A G
Sbjct: 639 PAIAA--HLQQDGRAVFVRDGDIVLAQGGREERLAAVAAIPLTHGGRVAFQVENVLAAVG 696

Query: 321 LCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              A+ I  AL+   +E   +     P +F     N  G  + VD  H +++L  ++  I
Sbjct: 697 AAWALDIPVALIRAGIETFDIDQADAPWQFTLFERN--GSTVVVDDVHNASALRPLIAAI 754

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPE-KIRAEIIH 434
               S     V+  G DR        GK+  D  D  ++ DD   RS+ PE + RA +  
Sbjct: 755 DQFPSTTRAAVYSAGADRRDADLIEQGKLLGDAFDRVVLYDDLTVRSKRPEGESRALLRQ 814

Query: 435 GIPGFIEKGNRIEAIR 450
           G    + +G R++ I+
Sbjct: 815 G----LAQGARVKDIQ 826


>gi|283850516|ref|ZP_06367804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
 gi|283574087|gb|EFC22059.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 100/264 (37%), Gaps = 53/264 (20%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E I+AVTG++GK++    +  + + +G   F  G             + TP   Y+    
Sbjct: 115 EPIVAVTGSNGKTTTVMLISHLLEAAGRKVFTGG------------NIGTPLSEYV---- 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L+      V +E SS  L   R    +   G   N   +H+D+H     Y +AK+ LF
Sbjct: 159 --LAGDPADVVVLEVSSFQLQLVRT--FRPRVGVLLNFSPNHLDWHADLDEYLDAKLNLF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +   P +   +    +   + +  R  + G  V+     G+F H  ++  +HN+Q +  +
Sbjct: 215 KAQRPGD---LALVPEELRETLAGRTLSKG-EVVWFAPSGRF-HCPRLAGLHNRQNMEAA 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                             Y A      C   G+         E     P R + +G   +
Sbjct: 270 ------------------YLA------CQPFGVTEETAKAAFESFAPAPHRLQIIG--EK 303

Query: 355 GGRIYVD--YAHTSNSLEMILKNI 376
            G ++VD   A T  ++E  LK+ 
Sbjct: 304 RGVLFVDDSKATTVAAMEAALKSF 327


>gi|241668293|ref|ZP_04755871.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876825|ref|ZP_05249535.1| glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842846|gb|EET21260.1| glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 561

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 121/303 (39%), Gaps = 44/303 (14%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTVRLTDYICRTAGKLT---GYTSTDWVKVNDELIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKAIVFRT- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHN------ 287
           + K+S A+I  D+ Y K+   +   A   V     Q     +L K    C + N      
Sbjct: 293 MGKDSHAVINLDNFYMKQQFDKLSCAKIIVTQDPDQHDMDYYLSKADYACVVENGIFTWI 352

Query: 288 ----KQQVTISVEGKDFDFLFPLP----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               K+Q+   V+        PL      +  + NA++A  L   +GID   + + L   
Sbjct: 353 DKKSKKQILPVVDA-------PLTVKGFAKHNIENAMIAIALSFKLGIDFDYIEKALRSY 405

Query: 340 HVVP----GR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG 391
              P    GR   FEF    +      +DYAH    +E +L  I+     G+  ++ G  
Sbjct: 406 KNDPKVNRGRANIFEFDNKVA-----VLDYAHNEAGMEALLNMIKAYDKGGKKYLMIGTT 460

Query: 392 GDR 394
           GDR
Sbjct: 461 GDR 463


>gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 448

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 155/368 (42%), Gaps = 45/368 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S +S+ I    +F+ + G++ DGH F+ +A+  GA + +     S +DF       
Sbjct: 25  VKNFSINSKSIGKDTLFIPLRGSRFDGHDFVKEALQNGAISFI-----SQKDFDDL---K 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P + V +T   L+L +   + +   N   ++ VTG+ GK+S   ++  +       S +
Sbjct: 77  VPYVKVGDT--LLALQSLAYFARRKLNDLKVVGVTGSVGKTSTKEYIFNVL------SLR 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                   +F  +N +  P  I     L+      V    +  S+ G         K   
Sbjct: 129 YRAFKNQGNF--NNHIGLPISI-----LNMPEDTQVAVFEMGMSNFGEISKLSQITKPDI 181

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNA 263
           G  TN+G  HI+  +++   F AK  + ++ +P+    II  D+      K+  KR    
Sbjct: 182 GVITNIGVAHIENLKSRYNIFLAKSEI-QDGMPESGILIINNDNDILNLHKKEFKR---- 236

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+++G + +     +    H   Q   S E  ++ +         +YN+L A  +  
Sbjct: 237 --KVVTIGIENESNFRAQNVQKH---QNGFSFEVDNYTYFIKSFNFHDIYNSLFAIAVGT 291

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
            + ID  L+ E + +   +  RFE +   ++G    VD  + +++  M L  I +I    
Sbjct: 292 ILEIDRELIKEAIRQKERLKRRFEVI---NKGSITVVDDTYNASTHSM-LSAIDSICEFD 347

Query: 382 GRIIVVFG 389
           G+ I+V G
Sbjct: 348 GKKILVLG 355


>gi|206890895|ref|YP_002249131.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742833|gb|ACI21890.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 456

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG   V NAL    +   + I    V E LE    +  RFEF G  + G + Y D
Sbjct: 268 FAITVPGNHNVLNALATIAVAKELSIPIEKVRESLENFTGISRRFEFKGEKN-GVKFYDD 326

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIV 415
           Y H    ++ ++K    +   R+ V+F     R    R +M       K  L   D+  +
Sbjct: 327 YGHHPTEIKAVIKTALWLKPQRLCVIF--QPHRYTRTRDLMEQFIQVFKTTLRKNDVLFL 384

Query: 416 TDDNPRSEDP-EKIRAEIIH 434
            D    SE P E + AEI++
Sbjct: 385 MDIYAASEPPIEGVSAEILY 404


>gi|223043731|ref|ZP_03613774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
 gi|222442828|gb|EEE48930.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
          Length = 449

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 148/343 (43%), Gaps = 54/343 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115
           + G E I      SL D +  I  N  I     ++ +  R+ L +      S L  + P 
Sbjct: 54  SMGIEVISGEHPLSLLDNNPIIVKNPGIPYTVSIIDEAVRRGLKILTEVELSYLISEAP- 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174
            I+ VTGT+GK++V S +  + ++S L+    G    ++S  AQ+            KA 
Sbjct: 113 -IIGVTGTNGKTTVTSLIGDMFKKSVLTGRLSGNIGYVASKVAQE-----------VKAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            YL    +T +S      G+D+++   I +I    TN+   H+DYH++ + Y NAK +++
Sbjct: 161 EYL----ITELS-SFQLLGIDEYK-PHIAII----TNIYSAHLDYHESLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292
           +     +     Y    Y +  +    N   + L    Q +   I++K    + N  ++ 
Sbjct: 211 KNQTEDD-----YLICNYHQRHLIETENLKSKTLYFSTQQEVNGIYIKDGFIVFNGVRI- 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  KD      LPGE  + N L A    I  G+    +++ L     +  R +++GT+
Sbjct: 265 --INVKD----LVLPGEHNLENILAAVLAAILAGVPVKAIVDSLTTFSGIDHRLQYIGTH 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
            R  + Y D +  +N+L         + S    +++ CGG DR
Sbjct: 319 -RTNKYYND-SKATNTLATQF----ALNSFTQPIIWLCGGLDR 355


>gi|260767159|ref|ZP_05876102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           CIP 102972]
 gi|260617833|gb|EEX43009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           CIP 102972]
          Length = 439

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 125/310 (40%), Gaps = 48/310 (15%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+++  +G    + +    + L  P+
Sbjct: 100 ELFAWHVDKPVIAITGSNGKSTVTDLTGVMANAAGIAT-AVGGNIGVPAL---DLLAQPA 155

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +Y+ +  S+          +E +S          + L A +F NL  DH+D +     Y
Sbjct: 156 ELYVLELSSF---------QLETTSS---------LALKAAAFLNLSEDHMDRYDGMAGY 197

Query: 227 FNAKMRLFEELLPKESPAIIYAD------DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
             AK+R+FE        A++ AD      DAYS   ++          +  + GK + L 
Sbjct: 198 RQAKLRIFEH----AQTAVVNADDTQTYPDAYSGRTVRFGLEQPAEFTTAQHDGKEVLLA 253

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                 N + V  + +         L G   V N L    L  A G++    L  L+   
Sbjct: 254 ------NGEVVLPTSD-------LSLVGRHNVANVLTVLALLDAAGVNYTNALPALKSYT 300

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKR 399
            +  R + V  N +G +   D   T+ +  +   +  T+     ++V G G   D    +
Sbjct: 301 GLTHRCQVVADN-QGIKWVNDSKATNVASTLAALSGLTLNGTLYLLVGGVGKGADFTPLK 359

Query: 400 PIMGKIALDL 409
           P++  + L L
Sbjct: 360 PVLETLPLML 369


>gi|157363503|ref|YP_001470270.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
 gi|189082509|sp|A8F4X2|MURC_THELT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157314107|gb|ABV33206.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
          Length = 445

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 81/186 (43%), Gaps = 22/186 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV----MKRAHNAGC 265
           TN   DH++ +   +  +    R    ++      + +++D  + ++      ++ N+ C
Sbjct: 175 TNARGDHLENYSGDRQLYRDCFR--SVVMSTRKSVVTFSEDENTSDLGTWTFGKSINSTC 232

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R++     G F            Q   I + GK+++    +PGE  + NA+    L  + 
Sbjct: 233 RLIDRNRNGLF------------QFAKIEINGKEYNLTLKVPGEHNILNAMAVITLLWSA 280

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTI-TSG 382
           G +   VL+ LE       RF     + +  ++Y+  DYAHT + ++ +L   R +  S 
Sbjct: 281 GHEVEEVLKALEDFTGTYRRFTVTVIDEK-RKVYMIDDYAHTPDEIKSLLSTTREVFPSQ 339

Query: 383 RIIVVF 388
           + +V+F
Sbjct: 340 KRVVIF 345


>gi|73542662|ref|YP_297182.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
 gi|109892727|sp|Q46WZ5|MURC_RALEJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72120075|gb|AAZ62338.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
          Length = 475

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 126/333 (37%), Gaps = 44/333 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A S  +       +  I VV        L   RL     +  +A+ GT GK
Sbjct: 64  GANAVVVSTAVSGDNPEVLAARSKRIPVVPRAVMLAELM--RL-----KQGVAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  +    GL  +F IG    ++S   + RL T   I                 
Sbjct: 117 TTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIV---------------- 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              A +   D   L+   +I    TN+  DH+D +    A        F + LP    A+
Sbjct: 159 ---AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI--SVEG---KD 299
           +  DD   +E++         V+  G+ +   I      A+  +   T+   + G     
Sbjct: 215 LCVDDPNVREILPFVSKP---VVRYGFAEDAQIRAVNARAVDGQMHFTVLRHLNGHAEPP 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGR 357
            D +  LPG   V NAL A  +   + +  A +++ L + H V  RF+  G    + G  
Sbjct: 272 LDVVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATADGTG 331

Query: 358 IYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
            +    DY H    +   L   R    GR +V+
Sbjct: 332 TFTLVDDYGHHPVEMAATLSAARGAFPGRRLVL 364


>gi|320352820|ref|YP_004194159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121322|gb|ADW16868.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
          Length = 458

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 35/147 (23%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G++   ++AVTG++GK++V S + ++ + SG + F  G             + TP   Y 
Sbjct: 106 GQYAVPVIAVTGSNGKTTVTSLIGELLRASGKNPFVGG------------NIGTPLLDYF 153

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF-------TNLGRDHIDYHQTQ 223
           A        QG   V +E SS  LD         +AG+F        N+  DH+D H + 
Sbjct: 154 A------DPQGYDAVVLELSSFQLD---------LAGAFRPDIGLLLNISPDHLDRHGSL 198

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADD 250
           +AY  AK  LF      +  AI+ ADD
Sbjct: 199 EAYTLAKQNLFRHQQLGDR-AILGADD 224


>gi|312795057|ref|YP_004027979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166832|emb|CBW73835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC
           6.3.2.10) [Burkholderia rhizoxinica HKI 454]
          Length = 476

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 8/106 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++VS+DSR      +FVA+ G + D H F+P    +G  A++VS   S  D+        
Sbjct: 27  DQVSTDSRSCGPASLFVALKGERFDAHDFLPDLARRGVAAVLVS--RSPGDW------RV 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           P + V +TR  L   A+    +    ++AVTG++GK++V   +  I
Sbjct: 79  PAIRVADTRAALGALAAGWRRRFALPLVAVTGSNGKTTVKEMIASI 124


>gi|308235256|ref|ZP_07665993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 570

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 33/249 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++  N ++ DSR I+   +   I GN +  +L    A   G    V   +Y+  D++   
Sbjct: 74  KKTYNHITYDSRDIKKNTLLF-IKGNFKPEYL--KDADKNGLTTYVAEQSYA--DYT--- 125

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRSGLS 143
             N   L+V + RK +SL +S  +G +P+  L V G +G       A F   I     L+
Sbjct: 126 --NAVGLIVTDVRKAMSLLSSEFFG-NPQERLRVIGITGTKGKTTTAYFTHAI-----LN 177

Query: 144 SFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  +  SS           ++ LTTP  +   + +S     G+ ++ +E SS    
Sbjct: 178 EHSEGKAALFSSVDNCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEVSSQAYK 237

Query: 196 QHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             R+ G+     +F N+  DHI    H T + Y   K     +++      I+ AD A++
Sbjct: 238 VERVYGLHFNVAAFLNISPDHISPIEHPTFEDYLYCK----RQIVKNTDALILNADCAHA 293

Query: 254 KEVMKRAHN 262
             +++ A N
Sbjct: 294 DLILQDAQN 302


>gi|228933511|ref|ZP_04096364.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826240|gb|EEM72020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 171

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 32  EIHGVRIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDNGAVASLWKKSY------GTPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
             PI+ VD T   L   A     +    ++ +TG++GK++V   ++ I + +
Sbjct: 85  GVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRST 136


>gi|197105784|ref|YP_002131161.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
 gi|254766016|sp|B4RFG2|MURC_PHEZH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196479204|gb|ACG78732.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
          Length = 477

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 7/191 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+  +H+D++   +A   A  + F E +P    A +  D    + +  R  
Sbjct: 176 LKSTVAVVTNIDPEHLDHYGDFEAVKKA-FQDFVENIPFYGFAAVCLDHPEVQAMTARVE 234

Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF----DFLFPLPGEFQVYNAL 316
           N       V  Q +   H  ++     +  V I      F    D L P+ G+  V NAL
Sbjct: 235 NRRLVTYGVNPQAEVRAHNIRMGPEGARFSVVIQPRDGGFISFDDLLLPMAGQHNVQNAL 294

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+    + + L     V  RF   G  + G R+  DY H    +  +LK  
Sbjct: 295 AAIAVARELGVSPDAIRKGLAAFGGVKRRFTTTGV-AGGVRVVDDYGHHPVEIASVLKAA 353

Query: 377 RTITSGRIIVV 387
           R ++ G++I V
Sbjct: 354 RAVSEGKVIAV 364


>gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
 gi|167654405|gb|EDR98534.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
          Length = 451

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 36/217 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S+DSR +    +FV IVG + + H F+  A+  G          SL          
Sbjct: 26  INRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDGGA--------SLTQEHEQAEGP 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGL 142
            PI+ V +T K +   AS    K    I+ +TG+ GK++    +  +        +  G 
Sbjct: 78  HPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTREMIAHVLKGKYRVFETVGN 137

Query: 143 SSFQIGPTSTISSFAQDNR-------LTTPSPIYLAKAL-----SYLSSQGVTHVSVEAS 190
            + Q+G   T+      ++       ++ P  I +   +     + +++ GV+H+    S
Sbjct: 138 QNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRPNAAVVTNVGVSHIEQMGS 197

Query: 191 SHGLDQHRLD--------GIKLIAGSFTNLGRDHIDY 219
              + + +LD        G+  + G   ++ R HI Y
Sbjct: 198 RDNICREKLDIQNGLPENGVLYLNGD-NDMIRKHIGY 233


>gi|148988717|ref|ZP_01820150.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
 gi|147925918|gb|EDK76993.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
          Length = 356

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI +A   GA A +   
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFENGAAATL--- 67

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S    +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 68  -------SEKEVANHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS 140
           +   +
Sbjct: 121 LLSTT 125


>gi|93006855|ref|YP_581292.1| UDP-N-acetylmuramate--alanine ligase [Psychrobacter cryohalolentis
           K5]
 gi|109892726|sp|Q1Q945|MURC_PSYCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|92394533|gb|ABE75808.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter
           cryohalolentis K5]
          Length = 479

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 11/191 (5%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +A   TN+ +DH++ +        A    F + +P    A++  DD    E+     + G
Sbjct: 190 MAAIVTNIDQDHMETYGNSFDKLKAAYIQFLQNMPFYGLAVVCGDD---PELYAMIDDIG 246

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGL 321
             VL+ G +  F  ++ V  +    +   +V  +D + L     +PG   VYNAL A  +
Sbjct: 247 RPVLTFGLE-PFNDVQAVDLVTEGTKTHFTVLRRDHEPLRLTLNIPGVHNVYNALAAITM 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYV--DYAHTSNSLEMILKNIR- 377
               G+D A +   L+K   V  RFE         G + +  DY H    ++  +K  R 
Sbjct: 306 ATDEGVDDAAITRALQKFEGVGRRFEQHASVEIDDGNVLLIDDYGHHPKEVDATIKAARQ 365

Query: 378 TITSGRIIVVF 388
           +    R++++F
Sbjct: 366 SFPERRLVMMF 376


>gi|332978085|gb|EGK14823.1| UDP-N-acetylmuramate--L-alanine ligase [Desmospora sp. 8437]
          Length = 466

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 40/279 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV G  GK++ +S + Q  +  G   ++ IG    + S   + +  + SP  +A+A   
Sbjct: 110 IAVAGAHGKTTTSSMIAQTMEEGGADPTYVIG--GEVVSLGSNAKAGS-SPYVVAEA--- 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                         S G        I ++    TN+  DH++ ++          R F  
Sbjct: 164 ------------DESDGTFLEYFPRIAVV----TNIEPDHLENYEGSFEKLKEAYRRFLS 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFI--HLKKVCAIHNKQQ 290
            + ++  AI+  DD Y  E+        CR   + Y    +  +   HL++V    N+ Q
Sbjct: 208 QVKEDGVAILGWDDPYLPEIA-----GACRARVITYALDREADYTATHLQQVL---NRTQ 259

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            T++ +G    D    +PG   V NAL A  +C+  G+    + E L +      RF+ +
Sbjct: 260 FTVNYQGTPLGDVTIHVPGRHNVANALAAVVVCLEAGLPFDTIAEGLSRFRGAKRRFQVI 319

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           G  + G  +  DYAH    +   +  ++ +   RI  VF
Sbjct: 320 G-EADGILVVDDYAHHPTEIRATINGLKALNR-RIFGVF 356


>gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella longbeachae NSW150]
 gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella longbeachae NSW150]
          Length = 441

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 16/105 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +++G +F+AI G + DGH FI +A A+GA A VVS              + P  VV
Sbjct: 26  DSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVSHRVE--------GVHIPQFVV 77

Query: 96  DNTRKFLSLFASRLYGKHPENI----LAVTGTSGKSSVASFVQQI 136
            +  + L    +++   H +NI    +A+TG++GK++    +  I
Sbjct: 78  PDPIQAL----AKIAAAHRQNIHCPVIALTGSNGKTTTKEMIAAI 118


>gi|212635040|ref|YP_002311565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           piezotolerans WP3]
 gi|212556524|gb|ACJ28978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Shewanella
           piezotolerans WP3]
          Length = 422

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 25/136 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA R     P  ++ +TG++GKS+V + V ++   +GL S+ +G    I      + 
Sbjct: 81  VELFA-RAIANSPARVIGITGSNGKSTVTTLVGEMAAAAGL-SYTLGGNIGIPVL---DL 135

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYH 220
           L  P  +Y+                +E SS  L+  H L+    IA +  N+  DH+D +
Sbjct: 136 LLNPKELYV----------------LELSSFQLETTHSLN---CIAATCLNISEDHMDRY 176

Query: 221 QTQQAYFNAKMRLFEE 236
              ++Y  AK+ L+++
Sbjct: 177 NDLESYRQAKLNLYDQ 192


>gi|183982420|ref|YP_001850711.1| Mur family ligase [Mycobacterium marinum M]
 gi|183175746|gb|ACC40856.1| ligase, Mur-family [Mycobacterium marinum M]
          Length = 911

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 151/382 (39%), Gaps = 47/382 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I A+TGT+GK++ +  +  I + +G     +G TST +     N            A   
Sbjct: 484 IAALTGTNGKTTCSRMLAHILKMAG---HVVGQTSTDAVLIDGNVTVKGDMTGPVSAKMV 540

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM-RLFE 235
           L    V    +E +  G+ +  L       G+  N+  DH+           A++ R+  
Sbjct: 541 LRDPSVDIAVLETARGGIVRSGLGYNFCDVGAVLNVASDHLGLGGVDTLDDLARVKRVVA 600

Query: 236 ELLPKESPAIIYADD-------AYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           E+       ++ ADD       A+S  ++VM    N    ++      + I L K+  + 
Sbjct: 601 EV--TRGTVVLNADDEQTLKMAAFSPARQVMYVTRNPEHELVR-----EHIRLGKLAVVL 653

Query: 287 ----NKQQVTISVEGKDFDFLFP--LPGEFQ------VYNALVAAGLCIAIG--ID--SA 330
               N  Q+ I   G     ++   +P   +      V NA+ A G+  A+G  +D  SA
Sbjct: 654 EQGVNGDQIVIYDNGTQMPLMWTQLIPATLEGKALHNVENAMFATGMAYALGKTLDQISA 713

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFG 389
            +          PGR      +  G R+ +DY H   ++  ++  + R    GR IV   
Sbjct: 714 GLRTFDNSFFQSPGRMNVF--DEHGFRVILDYGHNEAAVGAMVDLVDRLKPRGRRIVGLT 771

Query: 390 CGGDR-DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-----RAEIIHGI-PGFIE- 441
           C GDR D+    I  K+A          DDN R  +P+++      A I  G+ P  I  
Sbjct: 772 CPGDRRDEDATAIAAKVAGHFDTYICHRDDNLRDREPDEVPELLRDALIAEGVAPDAISI 831

Query: 442 KGNRIEAIRTAIEMLNKQDVLV 463
            G   +A+  A+E     D+++
Sbjct: 832 IGEEEQALDAALEQAQPDDLVL 853


>gi|51892169|ref|YP_074860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Symbiobacterium thermophilum IAM 14863]
 gi|60390359|sp|Q67QM7|MURD_SYMTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51855858|dbj|BAD40016.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 455

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 52/320 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTG++GK++  + + +I + +G  ++  G             +  P    L + +  
Sbjct: 112 VIGVTGSAGKTTTTTLIGEILRAAGRETYVGG------------NIGKP----LIEQVEA 155

Query: 177 LSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           + S+ V  V +E SS  L   HR   I ++    TN+  +H+D H T + Y  AK  +F 
Sbjct: 156 IPSEAV--VVLELSSFQLQLVHRSPHIAVV----TNVSPNHLDVHATMEEYVEAKKAIFR 209

Query: 236 ELLPKESPA---IIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               ++SPA   ++ ADD    A++ E   R      R    G    F+          +
Sbjct: 210 ----RQSPADWLVLNADDPTVRAFAAEARSRVVLFSRRADPGGRDAAFVR---------E 256

Query: 289 QQVTISVEGKDFDFLF----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            +V     G++   LF     LPG     N L A   C   G   + V E + +   V  
Sbjct: 257 DRVIWRRGGRETPILFLDEIRLPGLHNQENVLAAVAACFLAGAPLSAVREVVTQFTGVEH 316

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V     G + Y D   TS +    +  + T+ +   IV+   G D+     PI   
Sbjct: 317 RIEPVRVLD-GVKWYNDSKATSPA--EAVAALTTLPAP--IVLIAGGSDKGIPFDPIAPL 371

Query: 405 IALDLADIAIVTDDNPRSED 424
           +A  +  + ++    P+ E+
Sbjct: 372 VAEKVKTLILMGPTAPKIEE 391


>gi|310828116|ref|YP_003960473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
 gi|308739850|gb|ADO37510.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
          Length = 458

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 38/279 (13%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++  + +A +  NL  DH+D + T + Y  AK R+FE     E   ++ ADD   ++V +
Sbjct: 177 INKFRPVASAILNLSPDHMDRYGTMENYIAAKARIFENQR-GEDFLVLNADD---EQVCE 232

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLFP--------L 306
               A CR         +  L K  A     Q   +++G     D + + P        +
Sbjct: 233 LGRQAQCRKY-------YFSLDKKVA-----QGAYAMDGGIFINDNESVIPICRIEEMGI 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V NAL A  L   +G+D   + E L+    V  R EFV T   GG  Y++ +  +
Sbjct: 281 KGPHNVQNALAATVLAYFMGVDVVSIAETLKSFGGVEHRQEFVAT--IGGVDYINDSKGT 338

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           N+   I+  +  +T  + +++   G D+ +     +  +   +  + +V    P+ E   
Sbjct: 339 NTNAAIVA-LNAMT--KPVILIAGGYDKKEDYSEFIEVVCKKVKRMVLVGATAPQIE--- 392

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              A    G    +  G+  EA++ A E     DV++++
Sbjct: 393 --AAAESQGYYSTVRVGDYDEAVKVASECAAPGDVVLLS 429


>gi|301794651|emb|CBW37102.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV104]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI +A   GA A +   
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGVR-DGHDFIERAFENGAAATL--- 67

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S    +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 68  -------SEKEVANHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 455

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 139/373 (37%), Gaps = 48/373 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR I  G +FV + G + DGH F+  AI  GA A +    +  +        +
Sbjct: 24  ITSVAFDSRKITDGGLFVPLEGER-DGHDFVAGAINNGASATLWKKGHPNK------PDD 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +L VD+  + +   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IAVLEVDDPLEAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T    +F  +N +  P  I     L    +  +  + +     G   H  +         
Sbjct: 133 TQ--ENF--NNGIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVCVI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGC--- 265
           T +G  HI++  T+    +AKM + + L  +E    IY  D+    E  K+ + A     
Sbjct: 184 TMIGEAHIEFFGTRDKIADAKMEITDFL--REDGEFIYNGDEPLLAERAKKINQAKATFG 241

Query: 266 -----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                 V + G++              K   T ++   +  F  P+ G+  V NA+ A  
Sbjct: 242 FEDNDTVYATGFRSY------------KHHATFTINDSEQKFSIPMIGKHNVSNAMAAIS 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN---I 376
           +    G     +   L        R E+   +  G  I  D Y     ++  +L +   I
Sbjct: 290 VGHHFGESDEEIAASLANFTPTANRMEWEKGDV-GEDIMSDVYNSNPTAVRAVLNSFGQI 348

Query: 377 RTITSGRIIVVFG 389
                GR I V G
Sbjct: 349 EMPNGGRRIAVLG 361


>gi|153956316|ref|YP_001397081.1| cyanophycin synthetase [Clostridium kluyveri DSM 555]
 gi|219856632|ref|YP_002473754.1| hypothetical protein CKR_3289 [Clostridium kluyveri NBRC 12016]
 gi|146349174|gb|EDK35710.1| CphA [Clostridium kluyveri DSM 555]
 gi|219570356|dbj|BAH08340.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 874

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 144/354 (40%), Gaps = 42/354 (11%)

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +++G T+T   +  +  +          A + L ++ V    +E +  G+ +  L   
Sbjct: 502 AGYKVGMTTTGGIYIDNKCICRGDTTGYLSAKTVLENEEVEAAVLETARGGIIKKGLAYD 561

Query: 203 KLIAGSFTNLGRDHIDYHQTQQ----AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                  TN+  DH+  +        AY  A   L  E + K+   ++ ADD  SK ++ 
Sbjct: 562 LADVAVITNITEDHLGMNGIDSLEDLAYVKA---LVGEAVRKKGYVVLNADDLVSKNIIN 618

Query: 259 R-----------AHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLF 304
           R            +N   R  + +G  G ++  + +  +  K ++   ISVE    D   
Sbjct: 619 RMKSNIIMFSKDKNNLILRGNIDMGGYGVYMD-ESIMYLEKKNEIIPIISVE----DIKI 673

Query: 305 PLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRI 358
            L G+  + + NA+ A    I + I+ +++ E L+  +      PGRF     N  G ++
Sbjct: 674 SLGGKLVYNIENAMAACAAAIGLNINYSVIKEGLKSFYCDVSFNPGRFNIYDLN--GVKV 731

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTD 417
            +DY H     + ++   +     R+I + G  GDR+      +G+IA +  D I I  D
Sbjct: 732 VLDYGHNVEGYKSVINAAKNFNYKRLIGIIGVPGDRNDESVEKIGRIAGESFDYIYIKED 791

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKG-----NRIEAIRTAIEMLNKQDVLVV 464
            + R      I + +  GI   GF  K      N   A+  AI    + D +++
Sbjct: 792 KDKRGRKSGTIASILKKGIIKTGFSTKKVETILNEKMALEKAINTAKEGDFIII 845


>gi|15889377|ref|NP_355058.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium tumefaciens
           str. C58]
 gi|23821880|sp|Q8UDM9|MURC_AGRT5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15157227|gb|AAK87843.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium tumefaciens str.
           C58]
          Length = 471

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D + P+PG   V NA  A  +   +GI  A + + L     V  RF   G  + G +++ 
Sbjct: 277 DLVLPMPGRHNVSNATAAIAVANRLGISEADIKKGLASFAGVKRRFTLTG-EANGVQVFD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    ++ +L   R    GRII V
Sbjct: 336 DYGHHPVEIKAVLAAAREACKGRIIAV 362


>gi|327489499|gb|EGF21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1058]
          Length = 456

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 145/378 (38%), Gaps = 54/378 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    +     DSR I+   +FV + G + DGH FI       A A    +A +L D  
Sbjct: 20  QFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFI-------ATAFAHGAAATLSDHP 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
               +  P L+VD+        A     K   ++LAVTG++GK++    + Q+       
Sbjct: 72  V---AEGPYLLVDDVLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDMLAQLLATTYKT 128

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   T+    +D                 +   G  H+         D 
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167

Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+ AD     +
Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLR-KDGLLIVPAD-----K 221

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++     A  +++  G           C    K  ++      +     P+ G++   NA
Sbjct: 222 IVNEFLPADYKLVRFGPDADIFL---TCLEERKDSLSFDCNFLEKRIDLPVTGKYNATNA 278

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           ++AA   +  G+    + +   +L +   R E+    + G  I  D Y     ++ +IL+
Sbjct: 279 MIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILE 337

Query: 375 NIRTITS---GRIIVVFG 389
              TI +   GR + V  
Sbjct: 338 TFSTIPANPGGRKLAVLA 355


>gi|295099659|emb|CBK88748.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium cylindroides
           T2-87]
          Length = 435

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 51/281 (18%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + V GT GKS+    + Q+    G + F IG          DN +             
Sbjct: 102 NSICVAGTHGKSTTTGILGQVLSHFGKTGFLIGDGHGYMPKNADNFVLE----------- 150

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S +   H    +  + +               TN+  DH+DY++    Y +A      
Sbjct: 151 --SCEFQRHFLAYSPDYAI--------------ITNIELDHVDYYKDMDDYLDAFQSFIH 194

Query: 236 ELLPKESPAIIYADDAYSKEV------MKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHN 287
           ++  K   A+I+ DD Y K++      +    N G   R ++V      +H    C   N
Sbjct: 195 QIKKK---AVIFGDDPYLKDLDYKVPCVTYGLNEGNDYRAINVEMGSYGMHFD--CVYDN 249

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            + + + +      FL          +AL    LC  +G++++ ++E L++   +  R  
Sbjct: 250 DKNIHVELPEVGIPFL---------QDALGCFALCHEMGMEASDIVEGLKEYQGIARR-- 298

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           FV    +      DYAH   ++  ++   R    G+ +V  
Sbjct: 299 FVVEEVKDSVCIDDYAHHPTAIRYMIDAARKKYPGKKVVAL 339


>gi|58697604|ref|ZP_00372812.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58535891|gb|EAL59670.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 250

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 119/274 (43%), Gaps = 41/274 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AV+G+SGK++  + +  I   S + +  I     ++S+  ++RL   S I+L +A   
Sbjct: 1   MIAVSGSSGKTTTTAMIASIFDHSNIDATVI-VGGILNSYQSNSRLG-KSDIFLIEADE- 57

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S G T + + A+           I +I    T++  DH+D++ T    F+     F +
Sbjct: 58  --SDG-TMLKIPAN-----------ITVI----TSINDDHMDHYGT----FDDIKHAFSQ 95

Query: 237 LLPKESPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            + K   AI+        DA S  +M    +   R  ++      I       I N  ++
Sbjct: 96  FINKADFAILPDSVGINYDA-SNSMMFGFESGNIRASNIKQHANSIEFD--VLIDNNHRI 152

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              V       L    G  +V NAL A  + I +GI  A + + L +   V  RF  +  
Sbjct: 153 KNVV-------LSNTIGMHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLIA- 204

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           + +G ++  DYAH  N +   L   R+IT G++I
Sbjct: 205 DIKGVKLIEDYAHHPNEIYATLTAARSITKGKVI 238


>gi|239917863|ref|YP_002957421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
 gi|239839070|gb|ACS30867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 531

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 104/254 (40%), Gaps = 40/254 (15%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+   + + +TGT+GK++  + V+ I +  G  +   G   T              P+  
Sbjct: 147 GRKTADWVCLTGTNGKTTTVTMVEAILRADGRRAVACGNVGT--------------PVLD 192

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           A        QG   +++E SS  L  H   G+   + +  NL  DH+D+H + + Y  AK
Sbjct: 193 A----IRDPQGFDVLALELSSFQL--HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAAK 246

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAI---- 285
            +++          +    D  ++ +++RA    GCR  ++G+      L  +  +    
Sbjct: 247 GKVYAN---TRVACVFNEQDPLTRTLVERADVQEGCR--AIGFTTDTPGLSDIGVVDGIL 301

Query: 286 ------HNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                  N++   I++ E  D   L P+     + NA  AA L  A+G+  A V E L  
Sbjct: 302 VDRAFLDNRRHEAIALAERAD---LGPVAPRHTMANAAAAAALTRAVGVSPAAVAEGLRS 358

Query: 339 LHVVPGRFEFVGTN 352
                 R + V T+
Sbjct: 359 YDRGEHRIQLVATS 372


>gi|256395244|ref|YP_003116808.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
 gi|256361470|gb|ACU74967.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
          Length = 469

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 108/275 (39%), Gaps = 28/275 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++ +S V    + +GL  SF IG    I    +                  
Sbjct: 119 VAIAGTHGKTTTSSMVTVALRHAGLDPSFVIG--GEIGETGESGH--------------- 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +  G   V+    S G   H    I +I    TN+  DH D H    A   A+ + F  
Sbjct: 162 -AGSGDVLVAEADESDGTFTHYRPDISVI----TNIELDHPD-HFADVAQVRAEFQDFAG 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT-IS 294
            L      + YADD  ++ + +R    G RVL+ G      I +  V  +      T ++
Sbjct: 216 RLEPGGTLVCYADDPAARTIAERTAARGVRVLTYGAGADVDIRVTDVSTVGGFPVFTLVT 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +P      NA  A G+ +A+G+D    LE +        R +F+G  S 
Sbjct: 276 AEDAHGPITLSIPARHNALNAAAALGVALALGVDVEPYLEGVAGFSGARRRMQFLGEAS- 334

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVF 388
           G ++Y DY H    +  +L   R +   GR++  F
Sbjct: 335 GVKVYDDYGHHPTEIASVLSAARELAGQGRVVAAF 369


>gi|15965931|ref|NP_386284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium
           meliloti 1021]
 gi|307308241|ref|ZP_07587950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti BL225C]
 gi|307319708|ref|ZP_07599133.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti AK83]
 gi|7387920|sp|Q52953|MURD_RHIME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15075200|emb|CAC46757.1| Probable UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sinorhizobium meliloti 1021]
 gi|306894639|gb|EFN25400.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti AK83]
 gi|306901239|gb|EFN31845.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti BL225C]
          Length = 463

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + SG  + Q+G     +    D                  
Sbjct: 117 IAITGTNGKSTTTALIAHILRTSGRDT-QLGGNIGTAVLTLDP----------------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 159 PKAGRFYV-VECSSYQIDLAPT--LDPTAGILLNLTPDHLDRHGTMQHYADIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     A++  DD+ S  +  R   AG +V+ +
Sbjct: 212 VAGSGTAVVGVDDSLSSLIADRVERAGTKVVRI 244


>gi|121601881|ref|YP_989227.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella bacilliformis
           KC583]
 gi|166222956|sp|A1UTC4|MURC_BARBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|47779263|gb|AAT38531.1| MurC [Bartonella bacilliformis]
 gi|120614058|gb|ABM44659.1| UDP-N-acetylmuramate--alanine ligase [Bartonella bacilliformis
           KC583]
          Length = 475

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+D++ +  A      R F E +P    A++  D    + +  R  +       
Sbjct: 181 TNIDSEHLDHYGSFDA-VRESFRQFVENVPFYGFAVMCLDHPEVQTLASRIDDRWVITYG 239

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R L+   + K  H   +      ++  I  E +D   + P+ G+  V NA  A
Sbjct: 240 ANPQADVRFLNFSMKNKKAHFDVLI---RSRKTGIQTELRDL--VLPMSGKHNVSNATAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +GI   ++ + L +   V  RF   G+  RG  ++ DY H    ++ +L+  R 
Sbjct: 295 IAIAHELGISDEVIRKGLAEFGGVKRRFTQTGS-WRGIDVFDDYGHHPVEIKAVLRAARE 353

Query: 379 ITSGRIIVV 387
            T+G++I +
Sbjct: 354 STNGQVIAI 362


>gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
 gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
          Length = 455

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 33/210 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD--FSA 84
           E  +  +S DSR ++   +FV ++G K D H F+ QA   GA A + S   +  +    A
Sbjct: 23  ETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAAASLTSEHDTCPEGITGA 82

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            IR       V++T+K L      +  +    ++ +TG+ GK++    +      +G  +
Sbjct: 83  LIR-------VEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMIAAALS-AGYRT 134

Query: 145 F--------QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQ-----GVTH 184
           F        Q+G   TIS  +  +        ++ P  + +   ++ + +      GVTH
Sbjct: 135 FKTPANHNSQVGVPITISDISDSDEIGVLELGMSEPGEMEVIADIARVDTAVITNIGVTH 194

Query: 185 VSVEASSHGLDQHRL---DGIKLIAGSFTN 211
           +    S   + + +L   DG+K     F N
Sbjct: 195 IENLGSRENILKEKLRIQDGMKKGGTLFLN 224


>gi|312795062|ref|YP_004027984.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia rhizoxinica HKI
           454]
 gi|312166837|emb|CBW73840.1| UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 487

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 118/307 (38%), Gaps = 43/307 (14%)

Query: 67  GAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+A+V+S+A    +       R + PI+     R  +     RL     +  +A+ GT 
Sbjct: 88  GADAVVISTAVHADNPEVLEARRRHIPIV----PRAVMLAELMRL-----KQGIAIAGTH 138

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  +    GL  +F IG    + S   + RL T   I               
Sbjct: 139 GKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV-------------- 182

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                A +   D   L+   +I    TN+  DH+D +    A        F   LP    
Sbjct: 183 -----AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGI 236

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI-SVEGKDFD 301
           A++  DD   +E++         ++  G+ Q   +    VCA   +   T+   +    D
Sbjct: 237 AVLCVDDPNVREILPFVSKP---IIRYGFAQEADVRATHVCARDGRMHFTVHRADAAPLD 293

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRIY 359
            +  LPG   V NAL A  +   + +  A +   L + + V  RF+  G    +RGG   
Sbjct: 294 IVLNLPGTHNVQNALAAIAIATELEVADADIQSALAEFNGVGRRFQRYGEVPLTRGGAYL 353

Query: 360 V--DYAH 364
           +  DY H
Sbjct: 354 LIDDYGH 360


>gi|114045894|ref|YP_736444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-7]
 gi|113887336|gb|ABI41387.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-7]
          Length = 439

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 43/268 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  +L +TG++GKS+V + V ++ + +G++   +G    I +    + 
Sbjct: 97  VELFAREIADRKP-CVLGITGSNGKSTVTTLVGEMLREAGMA-VAVGGNIGIPAL---DL 151

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           LT  + I++                +E SS  L+  H L+    +A +  N+  DH+D +
Sbjct: 152 LTENADIFV----------------LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               AY  AK+RL+      +S +II+  DDA +        N+       G +      
Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K     H   ++    E         L G     N L A  L  A+G+D  ++ +     
Sbjct: 248 K---IYHGHSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTF 297

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +  R E VG   + G  YV+ +  +N
Sbjct: 298 TGLSHRCEVVGV--KAGVTYVNDSKATN 323


>gi|260896399|ref|ZP_05904895.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           Peru-466]
 gi|308087557|gb|EFO37252.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           Peru-466]
          Length = 398

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   ++DDA  +  ++  H         G QGKF  ++K  A 
Sbjct: 234 IDDPVIRELIPRISRQVITYGFSDDADVR--IENYHQE-------GQQGKFTVVRKGRA- 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        + D    +PG     NA  A  +     I+   +L+ +        R
Sbjct: 284 -------------NLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRR 330

Query: 346 FEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G     +  DY H    +++ +K  R+     R++++F
Sbjct: 331 FDHLGEFDTGNGHAMLVDDYGHHPTEVDVTIKAARSGWQDKRLVMIF 377


>gi|170739957|ref|YP_001768612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium sp. 4-46]
 gi|168194231|gb|ACA16178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           sp. 4-46]
          Length = 460

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 105/271 (38%), Gaps = 35/271 (12%)

Query: 102 LSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT--STISSFAQ 158
           + LF        P+   +A+TGT+GKS+  + +  + + +G    Q+G    + I S A 
Sbjct: 100 IELFCRERAASAPDAPFVAITGTNGKSTTTALIAHVLRETG-HDVQMGGNIGTAILSLAP 158

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
            +R                      HV +E SS  +D        +  G   N+  DH+D
Sbjct: 159 PSR-------------------DRVHV-IEMSSFQIDLTPTLAPSI--GVLLNVTPDHLD 196

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFI 277
            H T + Y   K    E L+     A+I  DD Y++ +  R      RV +  G +   I
Sbjct: 197 RHGTMENYAAIK----ERLVAGADHAVIGVDDDYTRAISARRDGPLTRVHVGEGAEAPGI 252

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +    I    +    V   D   +  L G     NA VA  +   +G+        L 
Sbjct: 253 LARHGLLIDGTAEPPAPV--ADLTGIASLRGAHNWQNAAVAYAVARGLGVAPDAFARALR 310

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
               +P R E VG   RGG ++++ +  +N+
Sbjct: 311 SFPGLPHRMEEVG--RRGGVLFINDSKATNA 339


>gi|319789828|ref|YP_004151461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114330|gb|ADU96820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
          Length = 432

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 19/178 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I  G +F+ + G + DGHLFI  A ++GA       A +L +    +      +VV
Sbjct: 26  DSREIAKGELFIPVKGRR-DGHLFINDAFSRGA-------AGTLTERRVELPPGKFQVVV 77

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-----IGPT 150
            +T +     A     K    ++ VTG+ GK++    + ++  R+  +S +     +G  
Sbjct: 78  RDTLEAFERLARWKREKFKGTVIGVTGSVGKTTTKELLGKLLGRNCYTSKKSFNNLLGVC 137

Query: 151 STISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            T+S+  +  R     L T SP  +A+ L+      V  V+    +H      L+ IK
Sbjct: 138 YTLSNLPESARFLVQELGTNSPGEIAR-LTKTVKPHVAVVTTVGKAHTQGFKTLEAIK 194


>gi|146305958|ref|YP_001186423.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
 gi|189029020|sp|A4XQS5|MURC_PSEMY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145574159|gb|ABP83691.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
          Length = 480

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 128/326 (39%), Gaps = 52/326 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+ A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 75  AEQADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 127

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L + S   +A+A     S+L  
Sbjct: 128 GKTTTTSLLASVFAAGGLDPTFVIG--GRLNAAGTNAQLGS-SRFLIAEADESDASFLHL 184

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFE 235
           Q +  V     +        D +    G F  L +  I++      Y  A +     +  
Sbjct: 185 QPMVSVVTNIDA--------DHMSTYGGDFNRLKKTFIEFLHNLPFYGLAVLCVDDPVVR 236

Query: 236 ELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ELLP+   P + Y    ++++   RA N    V   G +  F  L+  C     + + +S
Sbjct: 237 ELLPQVGRPTVTY---GFAEDADVRAIN----VRQEGMRTYFTVLRPDC-----EPLDVS 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353
           V          +PG   V NAL    +    GID A ++  L     V  RF+  G    
Sbjct: 285 VN---------MPGNHNVLNALATIAIATDEGIDDAAIVAGLSGFQGVGRRFQVYGELPV 335

Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR 377
            GG + +  DY H    +  ++K +R
Sbjct: 336 DGGSVMLVDDYGHHPREVAAVIKAVR 361


>gi|327458729|gb|EGF05077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1057]
          Length = 456

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 145/378 (38%), Gaps = 54/378 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    +     DSR I+   +FV + G + DGH FI       A A    +A +L D  
Sbjct: 20  QFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFI-------ATAFAHGAAATLSDHP 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
               +  P L+VD+        A     K   ++LAVTG++GK++    + Q+       
Sbjct: 72  V---AEGPYLLVDDVLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDMLAQLLATTYKT 128

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   T+    +D                 +   G  H+         D 
Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167

Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           H L  + K   G  T +G  H+++  ++      KM++ +  L K+   I+ AD     +
Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG-LRKDGLLIVPAD-----K 221

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++     A  +++  G           C    K  ++      +     P+ G++   NA
Sbjct: 222 IVNEFLPADYKLVRFGPDADIFL---TCLEERKDSLSFDCNFLEKRIDLPVTGKYNATNA 278

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           ++AA   +  G+    + +   +L +   R E+    + G  I  D Y     ++ +IL+
Sbjct: 279 MIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILE 337

Query: 375 NIRTITS---GRIIVVFG 389
              TI +   GR + V  
Sbjct: 338 TFSTIPANPGGRKLAVLA 355


>gi|261253806|ref|ZP_05946379.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
 gi|260937197|gb|EEX93186.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
          Length = 486

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 113/288 (39%), Gaps = 52/288 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+PK S  +I   ++DDA  +    R           G QGKF         
Sbjct: 234 VDDPVVRELIPKISRQVITYGFSDDADVRIANYRQD---------GQQGKF--------- 275

Query: 286 HNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                 T+  +GK D D    +PG     NA  A  +     I    +L  +        
Sbjct: 276 ------TVIRQGKADLDITLNIPGRHNALNASAAIAVATEDDIADEAILSAMAGTQGTGR 329

Query: 345 RFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           RF+ +G   T +    +  DY H    +++ ++  R      R++++F
Sbjct: 330 RFDHLGEFDTGNGQAMLVDDYGHHPTEVDVTIQAARNGWEDKRLVMIF 377


>gi|268316395|ref|YP_003290114.1| UDP-N-acetylmuramate [Rhodothermus marinus DSM 4252]
 gi|262333929|gb|ACY47726.1| UDP-N-acetylmuramate [Rhodothermus marinus DSM 4252]
          Length = 504

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 137/338 (40%), Gaps = 35/338 (10%)

Query: 120 VTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           V GT GK++ A  +  +  R+GL   F IG    +   A+ +      P ++ +   Y S
Sbjct: 134 VAGTHGKTTTAGLLAHVLDRAGLDPGFFIG---GVMIGAETSGRVGSGPWFVVEGDEYDS 190

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +        +     L  +R + + L +  F     DH D +     Y  A  +L   LL
Sbjct: 191 AY------FDKRPKFL-HYRPEAVLLTSIEF-----DHADLYDDLDDYREAFEQLVA-LL 237

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297
           P E   + + DD   ++V   A +   +V + G      + + +V      Q  T+ V+G
Sbjct: 238 PPEGLLVAHGDDPTVRQV---ARSCRAQVRTYGLHTLCDVTVGQVYPTFEGQHFTLIVDG 294

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  PL G   + NAL      + IG+    + E L     +  R E  G    GG
Sbjct: 295 RELGRFFLPLSGRHNLRNALAVCAFGLEIGLSPEQLREGLAGFPGMKRRLEVRGEA--GG 352

Query: 357 RIYV-DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIA 413
            + V D+AH   ++   L+  R      R++ +F    +  + KR     + A D AD  
Sbjct: 353 VLVVDDFAHHPTAVRETLRAARQRWPDRRLVAIFEPRSNSSRRKRFEQAYMEAFDDADEV 412

Query: 414 IVT----DDNPRSE---DPEKIRAEI-IHGIPGFIEKG 443
            ++      N R E   DPE + A I   GIP  + +G
Sbjct: 413 WLSMPPFRHNDRPEDFFDPESVAAGIRARGIPAHVAEG 450


>gi|152979585|ref|YP_001345214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus succinogenes
           130Z]
 gi|189028967|sp|A6VQN2|MURC_ACTSZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150841308|gb|ABR75279.1| UDP-N-acetylmuramate--alanine ligase [Actinobacillus succinogenes
           130Z]
          Length = 476

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 156/390 (40%), Gaps = 63/390 (16%)

Query: 56  GHLFIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           G +FI  A    + A  +VVSSA    +          I V+   +    L   R +G  
Sbjct: 64  GKIFIGHAATNVENASVVVVSSAIKPDNVEVVAAHEKRIPVIQRAQMLAELMRFR-HG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  + +  I  ++GL      PT       +    +  +  YL  A
Sbjct: 121 ----IAIAGTHGKTTTTAMISMIYTQAGLD-----PTFVNGGLVK----SAGTNAYLG-A 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YH----QTQQAYFN 228
             YL ++     + E+ +  L       ++ +    TN+  DH+D YH    + ++ Y N
Sbjct: 167 SRYLIAE-----ADESDASFLH------LQPMVSVVTNIEPDHMDTYHGDFDEMKRTYVN 215

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                F   LP    A++ ADDA   E++ +    G +V++ G+  K  +      I N 
Sbjct: 216 -----FLHNLPFYGLAVMCADDAVLMELVPQ---VGRQVITYGFSEKADY-----RIENY 262

Query: 289 QQV-------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +Q         I+  G+    L  +PG+    NA  A  +    GI +  +L  L     
Sbjct: 263 EQTGFQGHYDVITPAGERIHILLNVPGKHNALNATAALVVAKEEGIGNDAILAALADFQG 322

Query: 342 VPGRFEFVGTNSR-GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQG 397
              RF+ +G   R  G++ +  DY H    + + ++  R+   + R+++VF     R   
Sbjct: 323 AGRRFDQLGEFIRPNGKVMLVDDYGHHPTEVGVTIQAARSGWENRRVVMVFQP--HRYSR 380

Query: 398 KRPIMGKI--ALDLADIAIVTDDNPRSEDP 425
            R +       L   D+ I+ D  P  E P
Sbjct: 381 TRDLFDDFVRVLSQVDVLILLDVYPAGEQP 410


>gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
          Length = 460

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 68/345 (19%), Positives = 151/345 (43%), Gaps = 31/345 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+    DGH ++ +A+  GA A +   +Y       T   
Sbjct: 32  EIHGVCIDSKNMKEGNLFVPII-RMNDGHEYVKEAMDNGAVASLWKKSY------GTPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             PI+ VD+T   L   A     +    ++ +TG++GK++V   +  I      S++++ 
Sbjct: 85  GIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILS----STYRVH 140

Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
            T    +F  ++++  P  I  + +   +L  +    +S +     L +     + +I  
Sbjct: 141 KTK--GNF--NSQIGLPLTILEMERNTEFLILE--MGMSEKGQIRNLSRIAQPDVAII-- 192

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +G+ H++   +++    AK  + + L   +    +Y  D    E +   H     +
Sbjct: 193 --TMIGQSHLETLGSREEIAKAKFEIVDGL--HDDGLFLYNGD----EPLLSQHINTLGI 244

Query: 268 LSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S  + GK+ + L       ++  V   +      +  PL G+  ++N +V   +     
Sbjct: 245 ESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYK 304

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + +  + E L+++++   RF+F+   ++ G   ++ A  +N   M
Sbjct: 305 VSTEKIQEALQQINITQMRFQFL--TAKAGFTIINDAWNANPSSM 347


>gi|114799440|ref|YP_759855.1| putative UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas
           neptunium ATCC 15444]
 gi|114739614|gb|ABI77739.1| putative UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 469

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 122/326 (37%), Gaps = 40/326 (12%)

Query: 68  AEAIVVSSAY---SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           AE +VV+SA    ++ D +A +R       V   R   +   S L+   P  I  V GTS
Sbjct: 68  AEQVVVASAAVEDTVPDIAAALR-------VGARRMSRAQMLSALFNAAPTAI-GVAGTS 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+    +  I   +G S        T+ + A      TP  ++   A S + + G+  
Sbjct: 120 GKSTTTGMIAWILHHAGKSP-------TVMNGAVMKNFQTPDALF---ASSLVGASGIFV 169

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY--FNAKMRLFEELLPKES 242
             V+ S        + G        +N+  DH    + +  +  F A+       L  + 
Sbjct: 170 SEVDES-----DGSIAGYNPRVAVVSNISLDHKSMDELRALFGGFAARAETVVLNLDNDE 224

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A +  D  +   V     N   R+ +        H+    ++H++        G     
Sbjct: 225 TARMAGD--FPGAVTYSLENPAARLTAQNIAPAPTHI--TFSVHDQ------TSGATAPI 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
               PG   V N L A    +A G+  A   + L     +  RF+ +GT   G  +  D+
Sbjct: 275 RLATPGRHNVSNVLAAIAATLACGVTLAEAAKALASFAGISRRFDVIGTEG-GVTVIDDF 333

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVF 388
            H  + +   L+ +     GR++V+F
Sbjct: 334 GHNPDKIAATLRTVNQF-PGRVLVMF 358


>gi|320527324|ref|ZP_08028509.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
 gi|320132348|gb|EFW24893.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
          Length = 459

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 125/312 (40%), Gaps = 32/312 (10%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A I  + P  V    +K   +  + L G+  EN    +AV+GT GK++  S +  I  
Sbjct: 78  YTAAIHPDNPEYVSSVEKKIPMMTRAELLGELMENYKHSIAVSGTHGKTTTTSMLSYI-- 135

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              L +    PT ++              I + +  ++L+       + E ++  L+   
Sbjct: 136 ---LMAANTDPTISLGGMLAH----IGGNIRVGRGQTFLTE------ACEYTNSFLELKP 182

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L GI L      N+  DH+D+ +          R F   + KE   ++       KE + 
Sbjct: 183 LVGIIL------NVEADHLDFFKDLDD-IRLSFRRFASGI-KEGGTLVINHSIQDKEYI- 233

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              +    V++ G  G  +H + +   A+ N        + K  D    +PG+  V NAL
Sbjct: 234 -IGDFKGTVITFGEDGD-MHARNIAYDALGNPGFEVYYKDEKLGDVQLLVPGKHNVDNAL 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     +IGID A + + L     V  RF++ G    G  +  DYAH    +E  L   
Sbjct: 292 AAIATAYSIGIDFAAIKQGLVSYSGVDRRFQYKG-KCNGATVIDDYAHHPQEIEATLNAA 350

Query: 377 RTITSGRIIVVF 388
           +     ++ VVF
Sbjct: 351 KHYPHKKLYVVF 362


>gi|300118069|ref|ZP_07055817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
 gi|298724380|gb|EFI65074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
          Length = 243

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 23  EIHGVCIDSKNIKEGNLFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             PI+ VD T   L   A     +    ++ +TG++GK++V   ++ I
Sbjct: 76  GVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGI 123


>gi|114570632|ref|YP_757312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
 gi|114341094|gb|ABI66374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
          Length = 474

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 149/349 (42%), Gaps = 34/349 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S D+R +Q G +FVA+  +  DGH F+  A+ +GA A +V             R +
Sbjct: 31  VSGISIDTRTLQPGDLFVALQ-DARDGHDFVAAAMEKGASACLVE------------RGD 77

Query: 90  T---PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           T   P L+V +  + L    +    +     +AVTG+ GK+SV   +  + + SG + + 
Sbjct: 78  TGVEPALMVKDALEGLRALGAAARDRSDAIRVAVTGSVGKTSVKEALAAVFRSSGPAHW- 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                ++ S+  +N      P+ LA+ +   + + V  + +  +    D   L  ++   
Sbjct: 137 -----SVKSY--NNHWGV--PLTLAR-MPRDTGRAVFELGMNHAGEIRDLSSL--VRPHV 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGC 265
              T +   H+++  + +A  +AK  +F+  L ++  AI  +DD  ++ + + A H+   
Sbjct: 185 ALITRIAPAHLEHLGSVEAIADAKSEIFDG-LEQDGVAIYPSDDPLAERIARHARHSCAA 243

Query: 266 RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +L  G      I +++     +  +   +V G    F     G    +NA         
Sbjct: 244 FLLDFGTSASAAIRIEEFETGLDGSRGVANVLGVRAPFRLAATGAHWAWNAGAIFAAAAG 303

Query: 325 IGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSNSLEM 371
            G+D+  V E L  +   PGR     +     G    +D A+ +N + M
Sbjct: 304 AGLDARDVAEALSDVGAEPGRGRAARIALPDGGAFTLLDDAYNANPVSM 352


>gi|229817317|ref|ZP_04447599.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
 gi|229785106|gb|EEP21220.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
          Length = 484

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 23/163 (14%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A+   GK P   + +TGT+GK+S       +    GL +   G  ++ +     +R  T 
Sbjct: 93  ANERTGK-PAPWIGITGTNGKTSTTEMTSAMLSACGLDAPTAGNIASGNMSMSLSRCVT- 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           +P + A             + VE SS     H  D ++L   + TN+  DH+D+H  ++ 
Sbjct: 151 NPKHDA-------------LCVELSS--FQMHFTDSLELDCAAITNIADDHLDWHGGREN 195

Query: 226 YFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCR 266
           Y   K ++F  +      A++Y ADDA        A  A GCR
Sbjct: 196 YAADKAKVFHRV----KRALVYNADDAVVTAKANEAETAEGCR 234


>gi|139437201|ref|ZP_01771361.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
 gi|133776848|gb|EBA40668.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
          Length = 474

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G IFVA  G   DG+ F  +A+  GA A+V++     +  S        IL+ 
Sbjct: 32  DSRQVEEGTIFVAFPGENVDGNDFASRAVQSGAGAVVMTREPEAELVSLAQDKGCAILLT 91

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           D+  +FL   A     +    ++ +TG+ GK++
Sbjct: 92  DDPEEFLLRLAHTYRLELGCLVVGITGSIGKTT 124


>gi|294666420|ref|ZP_06731664.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603789|gb|EFF47196.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 477

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 124/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T   G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTGTGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|289578675|ref|YP_003477302.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
 gi|289528388|gb|ADD02740.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
          Length = 454

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H+T + Y + K R+FE     E   + Y DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLDRHKTFENYRDIKGRIFENQREDEYTVLNY-DDPVTWNLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +     L +  A      + ISV G      D + ++ +PGE  + NAL A+ +    
Sbjct: 240 SRKS----LLENGAYVKDGSIYISVYGNAEKIIDIEEIY-IPGEHNLENALAASSVAYLS 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ + +  ++
Sbjct: 295 GISADVIANTLKTFKGVEHRIEFV-DEINGVKFYNDSKGTNP--DASIKAIQALKTPIVL 351

Query: 386 VVFGC--GGDRDQGKRPIMGKI 405
           +  G   G + D+  +   GK+
Sbjct: 352 IAGGYDKGSEFDEFVKAFNGKV 373


>gi|256372027|ref|YP_003109851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008611|gb|ACU54178.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 437

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I AVTGT+GKS+V +    +     +++  +G               TP        LS 
Sbjct: 107 ITAVTGTNGKSTVTTLTASMLGDGAVAAGNLG---------------TP--------LSA 143

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  G   + VE SS  L        +    +  NL  +H+DYH + +AY  AK RL E 
Sbjct: 144 VADSGARRLVVEVSSFQLVWAPT--FRASVATVLNLTPNHLDYHGSFEAYRAAKARLIER 201

Query: 237 LLPKE 241
           L P +
Sbjct: 202 LAPGD 206


>gi|164688866|ref|ZP_02212894.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
 gi|164602070|gb|EDQ95535.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 137/355 (38%), Gaps = 45/355 (12%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFL 102
           + G+   G     +  +QGA+  +  +  ++ D      ++A I  + P L+    +  L
Sbjct: 27  VSGSDMHGSELTEKLASQGAKIFIGHAKENISDDIDIVVYTAAIHPDNPELIEAKNKNKL 86

Query: 103 SLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           ++  +   G   +  +N +AV+GT GK++  S +  I + +     ++ PT  +    + 
Sbjct: 87  TINRAAFLGQLMREYKNSIAVSGTHGKTTTTSMLSTIFEHA-----ELDPTILVGGNLKS 141

Query: 160 ---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
              N     S  ++ +A  Y+ S              L+ +    I L      N+  DH
Sbjct: 142 IGGNVKIGHSDHFITEACEYVDSF-------------LNFNPKIAIVL------NIEEDH 182

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +DY         A    F +LLP +   +I  D+    + M   H+   + +  G +   
Sbjct: 183 LDYFSGIDE-IKASFNKFGKLLPSDGYFVINGDN----QNMDILHDVKAKAIKFGKKESN 237

Query: 277 IHLKKVCAIHNK--QQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             + +  A  +       ++  GK    F   +PG   +YNA  A  + +  GID   V 
Sbjct: 238 DVIIENIAFDDLGCGSFDLNYMGKKLTGFKLSVPGLHNIYNATSAIIVSLVSGIDLETVK 297

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           E +     V  RFE  G    G  I  DYAH    ++  L   +    G +  VF
Sbjct: 298 EGIIDYTGVGRRFERKG-QYNGAAIIDDYAHHPTEIKATLSTAKRFKKGTLWCVF 351


>gi|89902196|ref|YP_524667.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodoferax
           ferrireducens T118]
 gi|118595682|sp|Q21SW7|MURD_RHOFD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89346933|gb|ABD71136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodoferax
           ferrireducens T118]
          Length = 506

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 28/139 (20%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            +LAVTGT+GK++V +    + +R G S   +  IGPT                   L  
Sbjct: 122 KVLAVTGTNGKTTVTALTGLLVERGGKSVAVAGNIGPT------------------LLDT 163

Query: 173 ALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            + +L++  +  V V E SS  L+     G +  A +  N+ +DH+D+H +  AY  AK 
Sbjct: 164 LIQHLAAGTLPEVWVIELSSFQLEGE--TGFEPSAAAVLNITQDHLDWHGSMAAYVAAKA 221

Query: 232 RLFEE----LLPKESPAII 246
            +F      +L +E P ++
Sbjct: 222 HVFGATGLMILNREDPQVM 240


>gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1
 gi|88192085|pdb|2AM2|A Chain A, Sp Protein Ligand 2
          Length = 454

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 15/114 (13%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
                       SN P ++VD+        AS    K   ++ AVTG++GK++ 
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTT 114


>gi|224476830|ref|YP_002634436.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254766022|sp|B9DN57|MURC_STACT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222421437|emb|CAL28251.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 437

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 100/274 (36%), Gaps = 40/274 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  +          L  P   + A      
Sbjct: 104 IAVTGAHGKTSTTGLLSHVMNGDKRTSFLIGDGTG---------LGIPQSEFFAFE---- 150

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                   + E   H L  H    I       TN+  DH DY +      NA    F+E+
Sbjct: 151 --------ACEYRRHFLSYHPDYAI------MTNIDFDHPDYFKDVDDVTNA----FQEM 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
                  I+    A+ K+   R   A   +   G +  + I+   +    +  Q  + ++
Sbjct: 193 AYNVKKGIV----AWGKDEHLRKIKADVPIYYYGLEKNEDIYADNIQITEHGTQFDVYID 248

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK FD FL P  G+  + N L    +C   G+D   + E LE    V  RF    T    
Sbjct: 249 GKYFDQFLSPQYGDHNILNTLAVIMVCHLEGLDIENIKEALETFGGVKRRFN--ETKLHN 306

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             +  DYAH    +   ++  R    +  +I VF
Sbjct: 307 QVLVDDYAHHPREINATIETARKKYPNKEVIAVF 340


>gi|320531623|ref|ZP_08032565.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136152|gb|EFW28158.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 524

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 122/300 (40%), Gaps = 41/300 (13%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D + T +A+  A +     L+P     +  A DA +  + + A   G RV++
Sbjct: 200 TNVEPDHLDSYGTAEAFEAAFVDFAHRLVPG-GLLVACAADAGALRLAQSAAAEGLRVVT 258

Query: 270 VGYQGK------------FIHL--KKVCAIHNKQQVTISVE---------GKD-----FD 301
             + G              +HL  +   A   +  +T++           G++      +
Sbjct: 259 YSFGGPDTLPGGVLVGEGHVHLDIQDRGASSTQALLTLTTATDRESAGGTGEEPSRSPVE 318

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            +  +PG+    +A  A    I +G++ A +   L        RFE  G  + G R+  D
Sbjct: 319 LVLAVPGDHVALDAAGAWAAGIELGVEPARMARALGVFGGTGRRFEDRG-EADGVRVIDD 377

Query: 362 YAHTSNSLEMILKNIRTIT---SGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTD 417
           YAH    +E +L+  R +     GR++V+F      R +      G+ AL LAD  +VTD
Sbjct: 378 YAHHPTEIEALLRTARGVAQERGGRVLVLFQPHLFSRTRAFADRFGQ-ALALADAVVVTD 436

Query: 418 DNPRSED----PEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             P  E     P      +   +PG   +    R++A R   +     D+L+  G G  T
Sbjct: 437 VYPARETQADFPGVTGDTVAQRVPGGRARFVAERLDAARAVADSARPGDLLLTVGAGDVT 496


>gi|319952318|ref|YP_004163585.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga
           algicola DSM 14237]
 gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga
           algicola DSM 14237]
          Length = 436

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 33/228 (14%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K + +S+D+R +    IF A+ G   DG+ +  +A+  GA+       Y++ D      S
Sbjct: 24  KFSTISTDTRKVTKDCIFFALKGENFDGNTYAKKALESGAK-------YAVIDDERFADS 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ILV D     L   A+     +   ++A+TG++GK++    +  +   +  +   +G
Sbjct: 77  DATILVPD-VLTCLQQLANFHRNFYKTKVIALTGSNGKTTTKELINSVLCTTYKTIATVG 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIA 206
                     +N +  P        L+ L+ +  T +++    ++H   Q  ++ +  IA
Sbjct: 136 NL--------NNHIGVP--------LTLLAIKEDTEIAIIEMGANH---QKEIEFLCNIA 176

Query: 207 ----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
               G  TN G+ H++   + +     K  L++ L   E P    ADD
Sbjct: 177 EPDFGYITNFGKAHLEGFGSFEGVIKGKSELYDYLQKDEKPIFFNADD 224


>gi|118477615|ref|YP_894766.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118416840|gb|ABK85259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 258

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 7/108 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++I+ G +FV I+  K DGH ++ +++  GA A +   +Y       T   
Sbjct: 38  EIHGVRIDSKNIKEGNVFVPIIRVK-DGHEYVKESMDNGAVASLWKKSY------GTPPK 90

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             PI+ VD+T   L   A     +    ++ +TG++GK++V   ++ I
Sbjct: 91  GVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGI 138


>gi|39936596|ref|NP_948872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650452|emb|CAE28975.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 479

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A       A   
Sbjct: 26  RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALNAGAALAVVEKAQ-----RAKFA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            + P+LVVD+  + L         + P  ++AVTG+ GK+S    ++ +    G +
Sbjct: 81  PDAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTSTKEGLRGVLGAQGAT 136


>gi|269960242|ref|ZP_06174617.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
 gi|269835049|gb|EEZ89133.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
          Length = 485

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 115/288 (39%), Gaps = 52/288 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   +ADDA  +  ++  H         G QGKF         
Sbjct: 234 IDDPVIRELIPRISRQVITYGFADDADVR--IENYHQE-------GQQGKF--------- 275

Query: 286 HNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                 T+  EG+ + D    +PG     NA  A  +     I    +L+ +        
Sbjct: 276 ------TVVREGRANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTQGTGR 329

Query: 345 RFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           RF+ +G    G     +  DY H    +++ +   R+     R++++F
Sbjct: 330 RFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIF 377


>gi|305680934|ref|ZP_07403741.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659139|gb|EFM48639.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
          Length = 496

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 92/241 (38%), Gaps = 29/241 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLF-----------IPQAIAQGAEAIVVSSAYSLQD 81
           V  DSR + +G +FVA+ G K DGH +           +  A   G  A++V  A  +  
Sbjct: 30  VEFDSRKVASGDLFVALSGVKVDGHDYAAAAMDRGAAGVLAARPVGVPAVIVPPATEVDH 89

Query: 82  FSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            S     +T      V++   K       +L  +    ++ +TG++GK+S    V  I +
Sbjct: 90  HSYATEHDTDGSVAAVLEGMAKLARYVVDKLSAR-GLTVIGITGSAGKTSTKDIVHTILE 148

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G +    G  +            T +  YL   +S  S   + H++  A  H      
Sbjct: 149 LAGDTVAPPGSFNNEIGHPYTALRCTEATKYLVSEMSARSIGNIAHLAAIAPPH------ 202

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                   G   N+G  H+    ++      K  L E  LP +  A++ ADD Y   +  
Sbjct: 203 -------IGVVLNVGTAHMGEFGSRDNIARTKGELVEA-LPADGIAVLNADDDYVAAMAD 254

Query: 259 R 259
           R
Sbjct: 255 R 255


>gi|192292418|ref|YP_001993023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286167|gb|ACF02548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris TIE-1]
          Length = 479

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A       A   
Sbjct: 26  RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALNAGAALAVVEKAQ-----RAKFA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            + P+LVVD+  + L         + P  ++AVTG+ GK+S    ++ +    G +
Sbjct: 81  PDAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTSTKEGLRGVLGAQGAT 136


>gi|121611886|ref|YP_999693.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
 gi|121556526|gb|ABM60675.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 890

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 150/416 (36%), Gaps = 76/416 (18%)

Query: 99  RKFLSLFASRLY-----GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           R        RLY     G+ P  ++AVTGT+GK++ A  + Q+    GL   ++G T+T 
Sbjct: 478 RNVAQAIVERLYAHGDDGRIP--VVAVTGTNGKTTTARLIAQLFTAQGL---RVGMTNTD 532

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
             +    ++ +        A + L    V     E +  G+ +  L   +      TN+G
Sbjct: 533 GVYVNGRQIDSGDCSGPKSARNVLLHPEVDAAVFETARGGILREGLGFDRCQVAVVTNIG 592

Query: 214 R-DH--IDYHQTQQ------------------AYFNAKMRLFEELLPKESPAIIYADDAY 252
             DH  ++Y  T Q                  A  NA   +   + P     +IY     
Sbjct: 593 TGDHLGLNYITTVQDLAVLKRVIVQNVAPGGYAVLNAADPIVAAMAPACPGKVIYFAGGR 652

Query: 253 SKEVM--KRAH-------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
              VM   RA        +  C V S G   + IHL+ V    N    TI+         
Sbjct: 653 HHPVMVTHRAQGHRTVYVDGDCIVASEGSWRETIHLRDVPVTRNG---TIA--------- 700

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIY 359
                 FQV N + A      +G+    +   L          PGRF  +  + RG  + 
Sbjct: 701 ------FQVDNVMAAVAAAWGVGLPWQTLRRGLSGFVNDSDNAPGRFNIM--DYRGATLI 752

Query: 360 VDYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            DY H  +++  +   +  I +     R +V+   G  RD+  R     +     ++ + 
Sbjct: 753 ADYGHNPDAMRALASAVEAIDAASGKRRSVVISAAGDRRDEDIRQQSAILGAAFDEVILY 812

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVV 464
            D   R     ++ A +  G+ G   +   IE       AI TA+  L   D+ +V
Sbjct: 813 QDAAQRGRSDGEVMALLRQGLIG-AARARHIEEIHGEFNAIDTALARLQPGDLCLV 867


>gi|293603442|ref|ZP_06685867.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
           piechaudii ATCC 43553]
 gi|292818144|gb|EFF77200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
           piechaudii ATCC 43553]
          Length = 510

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 18/119 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +L VTGT+GK++V +  + +   SGLS    G                 SP  L   +  
Sbjct: 133 LLTVTGTNGKTTVTALTRDLIDASGLSVVAAGNI---------------SPAALTALMDA 177

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L +  +  V V E SS  L+  R   +   A    N+ +DH+D+H    AY  AK R+ 
Sbjct: 178 LDNDALPQVWVLELSSFQLETTR--SLMADAAVVLNVTQDHLDWHGGMDAYAAAKARIL 234


>gi|258593035|emb|CBE69346.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [NC10
           bacterium 'Dutch sediment']
          Length = 475

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 159/420 (37%), Gaps = 58/420 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ +V SSA S ++          I V+        L   + YG      +AV GT G
Sbjct: 63  QEADVVVRSSAVSPENPEIVAAKAHAIPVIQRAEMLAELMRMK-YG------VAVAGTHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +  ++GL      PT  I       RL          AL   +  G    
Sbjct: 116 KTTTTSMVATVLAKAGLD-----PTVVIG-----GRL---------DALGSNAKLGRGEF 156

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            V A +   D   L     IA   T +  +H+DY++  Q      +    ++ P    AI
Sbjct: 157 MV-AEADESDGSFLKLAPTIA-VVTTVDAEHLDYYRDLQQIKETFLEFINKV-PFYGSAI 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           +  D  + ++++        RV+S G   +  +  + V          +  +G+   +  
Sbjct: 214 LCLDQEHIRDLLPMVQK---RVVSYGCHTQADLMAEGVSLTGLSSTFKVRFKGEPLGEVQ 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V NAL A  + + + I+ A +   L +   V  RF+  G+  +   +  DYA
Sbjct: 271 LRIPGVHNVSNALAAMAVGLELDIEFAAIRTALGEFSGVVRRFQVKGS-PQDIMVVDDYA 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    ++  LK  R     R+IV+F      R Q   P     A D AD  I+T   P  
Sbjct: 330 HHPAEIQATLKAARDGFGRRLIVIFQPHRYSRTQRLLPEFAS-AFDFADQVIITGIYPAG 388

Query: 423 EDPEKIRAEIIHGIPG-------FIEKGNRI-------EAIRTAIEMLNKQDVLVVAGKG 468
           E P       I G+ G        + KG ++       E     IE+    D+++  G G
Sbjct: 389 ETP-------IAGVSGRQIADGVVVRKGPKVLYVERKEEIPDRVIELARPGDLVITMGAG 441


>gi|190892585|ref|YP_001979127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhizobium etli
           CIAT 652]
 gi|190697864|gb|ACE91949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CIAT 652]
          Length = 470

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G  +   G   T         LT   P    KA  Y 
Sbjct: 117 IAITGTNGKSTTTALIAHILRSAGYDTQLGGNIGTAV-------LTLDPP----KAERYY 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 166 V--------VECSSYQIDLAPT--LNPSAGILLNLTPDHLDRHGTMQHYADVK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     A++  DD++S  +  R   AG +++ +
Sbjct: 212 VAGSDVAVVGIDDSHSALIADRVQRAGVKMVRI 244


>gi|322377427|ref|ZP_08051918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
 gi|321281627|gb|EFX58636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
          Length = 456

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 76/385 (19%), Positives = 151/385 (39%), Gaps = 56/385 (14%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N ++I+P    +  + +   DSR I AG +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDVTIYP----DSPLVKAEFDSRLIAAGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 70  KEI---------ANHPYILVDDVLTAFQSLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194
           +      +S++   T        +N +  P  +           +G   + +E    H  
Sbjct: 121 LLS----TSYKTYKTQG----NYNNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 165

Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYA 248
           D H L  +     +   L G  H+ + + +      KM++ +      LL   +  I+  
Sbjct: 166 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVED 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                K+V++    A   ++ +              +  K  +T      +     P+ G
Sbjct: 226 YLPTDKKVVRFGQGAELEIIDL--------------VERKDSLTFKANFLEQALDLPVTG 271

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           ++   NA++A+ + +  G+    + +  + L +   R E+    + G  I  D Y     
Sbjct: 272 KYNATNAMIASYVALQEGVSEEQIRQAFQHLELTRNRTEWKKA-ANGADILSDVYNANPT 330

Query: 368 SLEMILKNIRTITS---GRIIVVFG 389
           ++++IL+    I +   G+ I V  
Sbjct: 331 AMKLILETFSAIPANEGGKKIAVLA 355


>gi|317048967|ref|YP_004116615.1| FolC bifunctional protein [Pantoea sp. At-9b]
 gi|316950584|gb|ADU70059.1| FolC bifunctional protein [Pantoea sp. At-9b]
          Length = 422

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 29/179 (16%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLP       AL A+GL ++     A++ +HL  L ++PGRF+ V T     R+ +D AH
Sbjct: 254 PLPNAATALIALRASGLTVS----EAIIRQHL-PLAILPGRFQTVSTAP---RVILDVAH 305

Query: 365 TSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD------ 417
             ++   +   +  +  +G++  V G   D+D         IA  LA +A   D      
Sbjct: 306 NPHAAYYLASRLAELPRAGKVHAVVGMLHDKD---------IAGTLAALAPQVDSWYCAP 356

Query: 418 -DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            D PR    E++ A +  G   F    +  +A R   +    +DV++V G  H    ++
Sbjct: 357 LDGPRGATAEQLIAHLASG-EAFTTVDSAWQAAR---QQAKPEDVILVCGSFHTVAQVM 411


>gi|53720634|ref|YP_109620.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76808578|ref|YP_334914.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126441898|ref|YP_001060534.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126454974|ref|YP_001067785.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134280221|ref|ZP_01766932.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|167721339|ref|ZP_02404575.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           DM98]
 gi|167896002|ref|ZP_02483404.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           7894]
 gi|167904389|ref|ZP_02491594.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           NCTC 13177]
 gi|217425709|ref|ZP_03457199.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|226199600|ref|ZP_03795156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813918|ref|YP_002898369.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242315936|ref|ZP_04814952.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254180547|ref|ZP_04887145.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|254191011|ref|ZP_04897517.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199124|ref|ZP_04905539.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|254260254|ref|ZP_04951308.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
 gi|254299365|ref|ZP_04966815.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|59798176|sp|Q63QJ8|MURC_BURPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892695|sp|Q3JND9|MURC_BURP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222966|sp|A3NZL4|MURC_BURP0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222967|sp|A3NDW3|MURC_BURP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52211048|emb|CAH37036.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76578031|gb|ABA47506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126221391|gb|ABN84897.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126228616|gb|ABN92156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134248228|gb|EBA48311.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|157809030|gb|EDO86200.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|157938685|gb|EDO94355.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656954|gb|EDS88351.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|184211086|gb|EDU08129.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|217391297|gb|EEC31329.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|225928346|gb|EEH24377.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505140|gb|ACQ97458.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242139175|gb|EES25577.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254218943|gb|EET08327.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
          Length = 465

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 47/294 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYG-KHPENILAVTGT 123
           +GA A+VVS+A         +RS+ P +L     R  +   A  L      +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    ++S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297
           P    A++  DDA  ++++         V+  G+     +  + V A   +   T+  EG
Sbjct: 208 PFYGSAVVCIDDANVRQIVPLISKP---VVRYGFAADAQVRAENVEARDGRMHFTVRREG 264

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G
Sbjct: 265 REPLPVVLNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYG 318


>gi|73662897|ref|YP_301678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|122063263|sp|Q49WW5|MURD_STAS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72495412|dbj|BAE18733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 117/284 (41%), Gaps = 47/284 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+ VTGT+GK++V S +  + Q+S ++    G    ++S  AQ+      +  YL   LS
Sbjct: 113 IIGVTGTNGKTTVTSLIGDMFQKSRVTGKLSGNIGYVASKVAQE----VTADDYLVTELS 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G+            DQ++   I +I    TN+   H+DYH+T   Y NAK ++++
Sbjct: 169 SFQLLGI------------DQYK-PHIAII----TNIYSAHLDYHETLDNYQNAKKQIYK 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAH----NAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                +     Y      +    RA     +    V  +  +  +I  K    IH    V
Sbjct: 212 NQTENDYLICNYHQRHLIESETLRAKTYYFSTQQEVDGIYVKDDYIVFKGFRIIHKDDLV 271

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                         LPGE  + N L A    +  GI    +++ L     +  R +++GT
Sbjct: 272 --------------LPGEHNLENILAAVLAALLSGISVKAIIDSLTSFSGIEHRLQYIGT 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394
           N +  + Y D +  +N+L         + S +  +++ CGG DR
Sbjct: 318 N-KTNKYYND-SKATNTLATQF----ALDSFKQPIIWLCGGLDR 355


>gi|269101758|ref|ZP_06154455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161656|gb|EEZ40152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 22/118 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V S V ++ + +G+    +G    I  FA  + L     +Y+ +  S+
Sbjct: 110 VVAITGSNGKSTVTSLVGEMAKEAGID---VGVGGNIG-FAALDMLAQNHELYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     +E +S          + L A  + NL  DH+D +Q  + Y  AKMR+F
Sbjct: 166 ---------QLETTS---------SLHLAAAVYLNLSEDHMDRYQGLEDYSQAKMRIF 205


>gi|222112153|ref|YP_002554417.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Acidovorax
           ebreus TPSY]
 gi|221731597|gb|ACM34417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           ebreus TPSY]
          Length = 482

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 143/374 (38%), Gaps = 27/374 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +D+R + AG +FVA+ G + D H F+ Q           + A +    +    + 
Sbjct: 37  LARVHTDTRTLAAGDLFVALKGERFDAHQFLSQ--------ARTAGAAAAIAHAGLADAG 88

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-SGLSSFQIG 148
            P + V +T   L   A+    +    ++AVTG++GK++V   +  + +   G ++    
Sbjct: 89  LPGIEVPDTLAALGALATGWRAQRDLPLIAVTGSNGKTTVTQMIAAVLRAWKGDAAL--- 145

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +T  +F  D  +    P+ L   L          V +  +  G   +  D  +     
Sbjct: 146 --ATQGNFNNDVGV----PLTL---LRLRPGHEAAVVELGMNHPGEIANLADIARPTVAL 196

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N  R+H+++  T +A  +    +    LP +  A+  A DA++    + A    C  L
Sbjct: 197 VNNAQREHLEFMHTVEAVAHENGSVLSA-LPADGTAVFPAADAFTPLWRELAGTRHC--L 253

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G     +            QV I      FD    + G   V NAL A    +A G  
Sbjct: 254 TFGEAAGEVRCAAAQWGDGAWQVRIDTPNGAFDTRLAIAGRHNVTNALAATACALAAGGP 313

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRII 385
            A +   L     V GR   +     G  I V    Y    +S+   ++ +  +   R++
Sbjct: 314 LASIARGLAAFAPVNGRSRALAVRCGGRSITVVDDSYNANPDSVHAAIEVLAALPGPRLL 373

Query: 386 VVFGCGGDRDQGKR 399
           V+   G   DQG +
Sbjct: 374 VLGDMGEVGDQGSQ 387


>gi|300788099|ref|YP_003768390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
 gi|299797613|gb|ADJ47988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
          Length = 469

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 28/162 (17%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +HP + L VTGT+GK++    ++ I   +G ++   G    I   A D            
Sbjct: 104 EHPPSWLVVTGTNGKTTTVGMLESILNAAGSNAVACG---NIGYAALD------------ 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                    G   ++VE SS  L  H    +   A +  NL  DHID+H +   Y  AK 
Sbjct: 149 -----AVRAGYDVLAVELSSFQL--HWSSTLAPDAAAVLNLAEDHIDWHGSMDEYAAAKG 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           R++     +   A+  ADD +S  +   A +A      VG+Q
Sbjct: 202 RVYT----RAKVAVHNADDDWSTRIA--AEHAPEGTPRVGFQ 237


>gi|313888463|ref|ZP_07822130.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845492|gb|EFR32886.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 439

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +V +EASS  L ++ +D    IA   T +  DH+D+H+T+Q Y +AK ++F+     +  
Sbjct: 149 YVVIEASSFQL-ENTVDFKPHIA-VLTYVTSDHLDWHKTKQNYVDAKFKIFKNQDENDFA 206

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y D   +++   +A      +     +G ++   K+      +   I ++ KD    
Sbjct: 207 ILNYEDKELAEKYNLKAEKYYFSMEKTSEKGAYLDQGKIYFTDGDKTEEI-LDVKD---- 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +PG+  + N + A   C  + ID  ++ + +     V  R EFV
Sbjct: 262 IKIPGDHNIRNIMAAVIACKLLKIDLDVIKKSIVSFTGVEHRIEFV 307


>gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
 gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
          Length = 822

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 128/322 (39%), Gaps = 28/322 (8%)

Query: 30  INEVSSDSRHIQAGW--IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +N + +DSR I   +  +F A+ G + DGH FI      G    VV            + 
Sbjct: 27  VNNLLTDSRKINNPFTSLFFALSG-RRDGHEFIGDVYQAGVRNFVVFKL----PVKVDLL 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGLSSFQ 146
            +   LVVD+  K L   A     K   +++ +TG++GK+ V  ++ Q+ C    +    
Sbjct: 82  RDANFLVVDDVLKALQKLAIHHREKFDIDVIGITGSNGKTIVKEWLYQLLCADKKIIR-- 139

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             P S       ++++  P  ++       L   G+    +  +       R+  IK   
Sbjct: 140 -NPKSY------NSQIGVPLSVWQMDDQHNL---GIFEAGISTTGEMERLERM--IKPTI 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  T++G  H +     +     K++LF          +IY  DA  K    R       
Sbjct: 188 GILTHMGSAHDEGFSGPEKKLEEKLKLF-----THCSMVIYQYDALLK-YKARVPGKTKF 241

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S  ++   +++     I NK  +    +GK+ + L P   E  + NA+V     +A+G
Sbjct: 242 TWSRKFREVDLYVFNETIISNKYYLRGVFKGKEIECLVPFIDEASIENAIVCWATMLALG 301

Query: 327 IDSALVLEHLEKLHVVPGRFEF 348
            DS +  + LE+L  V  R E 
Sbjct: 302 YDSQVADDRLERLVPVSMRMEL 323


>gi|218661509|ref|ZP_03517439.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli IE4771]
          Length = 256

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI SA + + L     V  RF   G  + G +I+ D
Sbjct: 63  LVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTGEWN-GVQIFDD 121

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GRII V
Sbjct: 122 YGHHPVEIKAVLRAAREACKGRIIAV 147


>gi|157092726|gb|ABV22534.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 862

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D  IV +D+
Sbjct: 742 VDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDD 801

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                P    +E+I      ++   R E+I    + +NK
Sbjct: 802 DTRGRPRGSASELITKGITQVKPDARYESILDETQAINK 840


>gi|17231371|ref|NP_487919.1| cyanophycin synthetase [Nostoc sp. PCC 7120]
 gi|20137726|sp|P58572|CPHA_ANASP RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|17133013|dbj|BAB75578.1| cyanophycin synthetase [Nostoc sp. PCC 7120]
          Length = 901

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR       +
Sbjct: 727 PGRMNLF--NLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTL 784

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           GK+A ++ D  IV +D+     P    +E+I      ++   R E+I    + +NK
Sbjct: 785 GKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINK 840


>gi|242309201|ref|ZP_04808356.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
 gi|239524242|gb|EEQ64108.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
          Length = 489

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 139/335 (41%), Gaps = 63/335 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQD--NRLTTPSPIYL 170
           I+AVTG+ GK+S+ +F+ Q+ Q      F++  T    +T++    D    L+  + IY+
Sbjct: 164 IIAVTGSYGKTSLKNFLIQVLQ----DDFKVYATPRSINTLTGIIADINQNLSPLTDIYI 219

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A     ++GV  +          +  ++ IK        +G  HI+Y +T +  +  K
Sbjct: 220 VEA----GARGVGDI----------KEIVELIKPQIAVVGKIGPAHIEYFKTMENIYQVK 265

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             + +    +   A IY +            N      ++ +QGK I     C   N  +
Sbjct: 266 YEILQS--DRLERAYIYKE------------NTKPEAFNIEFQGKVI-----CFPQNISE 306

Query: 291 VTISVEGKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +   +EG  F              + G F V N   A  +   +G+    +++ ++KL  
Sbjct: 307 INADLEGTSFVLTENGEKIQLETKVLGAFNVINISAAIAVAKDLGVSKNQIIKQVQKLER 366

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKR 399
           V  R   +  N    +I +D ++  N LE +L+ IR  ++ +GR ++V     +  +   
Sbjct: 367 VNHRLSKIVVND---KIILDDSYNGN-LEGMLEAIRLASLHTGRKVIVTPGLVESSKEAN 422

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             + +    + DIAI+T      E   KI  E I+
Sbjct: 423 VDLARAIDKVFDIAIIT-----GELNSKILKEFIY 452


>gi|167043605|gb|ABZ08299.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 455

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 29/238 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +I+A+TG++GK++    +  + +++G ++F  G       F+ D   T P  +       
Sbjct: 112 HIIAITGSNGKTTTTELLGHLFRKAGRNTFVCGNVG--RPFSDDTDRTGPDDL------- 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
                    V +E SS  LD   +D  +       N+  DH+D Y+Q    Y  +K+R+ 
Sbjct: 163 ---------VVLEVSSFQLDH--IDSFRPDVSILLNITPDHLDRYNQDIDRYAASKLRIC 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQV 291
           E     ++      D+  ++ V KRA       +S+  + +   F+    +    N Q+ 
Sbjct: 212 ENQTGVDTFIFNQDDERIARFVRKRARGPIALGISITEEIRATGFLRNSDLMLRINDQEE 271

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +    K       L G   V+N+L AA       + S +V E L     VP R E V
Sbjct: 272 NLMPTEK-----LALRGRHNVFNSLAAAVAARVAEVRSDVVRESLRSFEGVPHRLEIV 324


>gi|107021634|ref|YP_619961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688579|ref|YP_834202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891823|gb|ABF74988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646668|gb|ABK07309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia HI2424]
          Length = 468

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 148/375 (39%), Gaps = 32/375 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N VS+DSR + AG +FVA+ G + D H F+          +    A +     A      
Sbjct: 27  NRVSTDSRTVGAGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPAGIAM 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P++    TR  L   A     + P  ++AVTG++GK++V   +  I   +      +G  
Sbjct: 79  PMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFAAA------VGAD 132

Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           + +++    +N +  P  +    A   L+    G+ H      +  L +     + L+  
Sbjct: 133 ARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNH---PGETEVLARLTAPTVALV-- 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T  A       +    LP +  A+  ADDAY+   + R    G R+
Sbjct: 188 --NNAQREHQEFMATVDAVALEHAAVIHA-LPPDGVAVFPADDAYAG--IWRVAATGNRI 242

Query: 268 LSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L    +  +  +  +V    +  ++ I              GE    NAL A    +  G
Sbjct: 243 LDFALHDAERQNDAQVVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAATAAALGAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
           +  + + + LE    V GR +       S GG   VD  + +N  S+   +  +    + 
Sbjct: 303 VALSAIRQGLEAFEPVKGRLQVKQASVGSLGGATVVDDTYNANPDSMRAAIDVLAAHPAP 362

Query: 383 RIIVVFGCGGDRDQG 397
           R++V+   G   D+G
Sbjct: 363 RVLVIGDMGEVGDEG 377


>gi|297539594|ref|YP_003675363.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
 gi|297258941|gb|ADI30786.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
          Length = 452

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 27/152 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA   Y      ++A+TG +GK++V + V +IC+ +GL +   G    I     D  
Sbjct: 100 VELFAQ--YRPTSAKVIAITGANGKTTVTTLVGEICKAAGLKTIVAG---NIGLPVLDAL 154

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +     +Y+ +  S+          +E +S+         +++ A +  NL  DH+D + 
Sbjct: 155 MMETPDVYVLELSSF---------QLETTSN---------LQIDAATMLNLSEDHMDRYA 196

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           + Q Y  AK R+F          ++  DDA+S
Sbjct: 197 SFQDYAIAKARIFY----NAKLQVLNRDDAWS 224


>gi|145588855|ref|YP_001155452.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047261|gb|ABP33888.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 856

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 154/378 (40%), Gaps = 41/378 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTGT+GK++    +  +   +GL   ++G T T   +     + T        A + 
Sbjct: 472 VVAVTGTNGKTTTVRLISHLLTETGL---RVGMTGTDGVYINHRAIDTGDCSGPKSARNV 528

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DH--IDYHQTQQAYFNAKMRL 233
           L    V    +E +  GL +  L   +      TN+G  DH  ++Y  + +     K  +
Sbjct: 529 LMHPDVDAAVLETARGGLLREGLGFDRCEVAVVTNIGEGDHLGLNYITSVEDLAILKRVI 588

Query: 234 FEELLPKESPAIIYAD-------DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + + P  +  +  AD       D  S  V+  A N    V++  ++ K    KKV  I+
Sbjct: 589 VQNVAPTGAAVLNAADPMVAKMGDKCSGRVIFFAQNQHHPVITA-HRAKN---KKV--IY 642

Query: 287 NKQQVTISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           N     ++ +G    + FP+            FQV NA+ A G   A+G+D+  +   L 
Sbjct: 643 NDGTYIVASKGSRVMYRFPVSEIPLTQNGVLGFQVENAMAAIGAAWALGLDAEKIARGLN 702

Query: 338 KL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGG 392
                 + VPGRF     N  G  +  DY H  +++  +   I  +   +  +V+ G G 
Sbjct: 703 SFESTANSVPGRFNQFQHN--GATVIADYGHNPDAMRALASAITAMKPKQSHVVISGAGD 760

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----- 447
            RD+  R +   +     +I +  D   R  +  ++   +  G+ G  +     E     
Sbjct: 761 RRDEDIRDLTRILGNSFDNIILYQDACQRGREDGEVLKLLQEGLVGATKAKQVKEIHGEF 820

Query: 448 -AIRTAIEMLNKQDVLVV 464
            AI TA+  ++  D+ ++
Sbjct: 821 LAIDTALNDISAGDICLI 838


>gi|76881227|gb|ABA56282.1| cyanophycin synthetase [Nostoc ellipsosporum]
 gi|157092715|gb|ABV22527.1| cyanophycin synthetase [synthetic construct]
 gi|157092741|gb|ABV22544.1| cyanophycin synthetase [Nostoc ellipsosporum NE1]
          Length = 901

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR       +
Sbjct: 727 PGRMNLF--NLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTL 784

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           GK+A ++ D  IV +D+     P    +E+I      ++   R E+I    + +NK
Sbjct: 785 GKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINK 840


>gi|157092735|gb|ABV22540.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 855

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D  IV +D+
Sbjct: 742 VDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDD 801

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                P    +E+I      ++   R E+I    + +NK
Sbjct: 802 DTRGRPRGSASELITKGITQVKPDARYESILDETQAINK 840


>gi|157092720|gb|ABV22530.1| truncated cyanophycin synthetase [synthetic construct]
 gi|157092723|gb|ABV22532.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 866

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D  IV +D+
Sbjct: 742 VDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDD 801

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                P    +E+I      ++   R E+I    + +NK
Sbjct: 802 DTRGRPRGSASELITKGITQVKPDARYESILDETQAINK 840


>gi|330892871|gb|EGH25532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 101

 Score = 46.2 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR IQ G +FVA+ G + DGH ++ Q  A+GA   +V              ++ P 
Sbjct: 24  VSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQ--------GASLPQ 75

Query: 93  LVVDNTRKFLS 103
           LVV +TRK L+
Sbjct: 76  LVVIDTRKALA 86


>gi|294627725|ref|ZP_06706307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598077|gb|EFF42232.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 477

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 124/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V     + + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T   G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTGTGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 460

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 16/138 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DS+ I  G +FV I+  K DGH ++ +A+ +GA A +   +Y   D    I    PI
Sbjct: 36  VCIDSKKITKGNLFVPIIRVK-DGHDYVKEAMEKGAAASLWKKSYG--DPPKGI----PI 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC-------QRSGLSS 144
           + VD+T   L   A R Y K     ++ +TG++GK+ V   +  I        +  G  +
Sbjct: 89  IFVDDTLLALQKIA-RYYRKTSNVKVIGITGSNGKTMVKDIISTILSTTYRVHKTKGNLN 147

Query: 145 FQIGPTSTISSFAQDNRL 162
            QIG   TI    QD   
Sbjct: 148 SQIGLPLTILEMKQDTEF 165


>gi|218512914|ref|ZP_03509754.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli 8C-3]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI SA + + L     V  RF   G  + G +I+ D
Sbjct: 32  LVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTGEWN-GVQIFDD 90

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GRII V
Sbjct: 91  YGHHPVEIKAVLRAAREACKGRIIAV 116


>gi|157092738|gb|ABV22542.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 849

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D  IV +D+
Sbjct: 742 VDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDD 801

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                P    +E+I      ++   R E+I    + +NK
Sbjct: 802 DTRGRPRGSASELITKGITQVKPDARYESILDETQAINK 840


>gi|157373552|ref|YP_001472152.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
 gi|189082501|sp|A8FQA1|MURC_SHESH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157315926|gb|ABV35024.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
          Length = 489

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 136/338 (40%), Gaps = 55/338 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVS+A S  +          I VV        L   R +G      +AV GT G
Sbjct: 79  HGADVVVVSTAISADNPELLEAQALRIPVVQRAEMLAELMRYR-HG------VAVAGTHG 131

Query: 126 KSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S +  +  Q     +F IG    ++S   + RL   S   +A+A     S+L  Q
Sbjct: 132 KTTTTSLIASVYGQAERDPTFVIG--GLLNSAGTNARLGH-SRYLIAEADESDASFLHLQ 188

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D ++       +    F   LP 
Sbjct: 189 PMVSV-----------------------VTNIEADHMDTYEGDFEKLKSTFIDFLHNLPF 225

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS------ 294
              A++  DD   +E++ +    G ++++ G    F     V A++  Q+  +S      
Sbjct: 226 YGVAVMCIDDPVVRELLPK---VGRKIVTYG----FSEDADVQALNFVQEAYLSRFTLRR 278

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--N 352
              +D + +  LPG+  V NAL A  +     ID A +++ L     +  RFE +G    
Sbjct: 279 AGVEDMEVVVNLPGQHNVLNALAAIAVATEDEIDDAAIIQALADFQGIGRRFEQLGCFDT 338

Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           ++G  + V DY H  + +   +K  +      R+++V+
Sbjct: 339 NKGEMVLVDDYGHHPSEVAATIKAAKAGWPEKRLVMVY 376


>gi|134300391|ref|YP_001113887.1| FolC bifunctional protein [Desulfotomaculum reducens MI-1]
 gi|134053091|gb|ABO51062.1| FolC bifunctional protein [Desulfotomaculum reducens MI-1]
          Length = 431

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 158/393 (40%), Gaps = 52/393 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS--------------FQIG----PTSTIS 154
           H  NI+ + GT+GK S  + +  I + +G  +              F I     P  T++
Sbjct: 37  HRLNIVHIGGTNGKGSTTAMIANILKTAGYKTGMFTSPHLQDYTERFLINGQPIPQETLA 96

Query: 155 SFAQDNR----------LTTPSPIYLAKALS--YLSSQGVTHVSVEASSHG-LDQHRLDG 201
           S  Q  R             P+   ++ AL+  Y + +    V++E    G +D   +  
Sbjct: 97  SLIQYIRPHLDKMVQEGFEHPTEFEVSTALALLYFAREETDFVALEVGLGGAIDSTNV-- 154

Query: 202 IKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           +K      TN+  DH+DY   T     N K  + ++ +P     +  A+      + +RA
Sbjct: 155 VKPKVSVITNIAMDHMDYLGSTLVDIANVKAGIIKQGIP----VVTAAEGEALGVIRQRA 210

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                +++ +G +  +   K        Q+  I+     +    PL GE Q  NA  A  
Sbjct: 211 LVNNSKLIQIGKEVTWKPQKNKFK-QGFQEFIINGLQNQYYVRLPLLGEHQQVNAASAVA 269

Query: 321 ----LCIAIG--IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
               L    G  + SA+V+E L  +   PGR E +    R     +D AH       + K
Sbjct: 270 AVELLFTGNGYHLPSAVVIEGLRTVEW-PGRLEII---RRNPTTILDGAHNHAGAIALKK 325

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            + +   S +II V G   D+++ K  ++ ++A     + +   +NPR+ D  K+   + 
Sbjct: 326 ALESCFPSQKIIFVLGMLADKERSK--VVAELAPLSKAVVVTRSNNPRAGDWRKLADYVR 383

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I   I   N  EAI  A+  + + ++L + G
Sbjct: 384 TYIEDVIVVENVAEAINQALGHVKESEILCITG 416


>gi|307705389|ref|ZP_07642248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
 gi|307621052|gb|EFO00130.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 79/387 (20%), Positives = 158/387 (40%), Gaps = 60/387 (15%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS------- 128
                       +N P ++VD+        A+    K   ++ AVTG++GK++       
Sbjct: 70  KE---------LANHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           + S + +  +  G  + +IG   T+        L  P              +G   + +E
Sbjct: 121 LLSTIYKTYKTQGNYNNEIGLPYTV--------LHMP--------------EGTEKLVLE 158

Query: 189 -ASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               H  D H L  +     +   L G  H+ + + +      KM++ + +    S +++
Sbjct: 159 MGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSDIAKGKMQIADGM---SSNSLL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A    +  +++    A  +V+  G QG  + +  +  +  K  +T      +     P+
Sbjct: 216 LAP---ADPIVESYLPADKKVVRFG-QGAELEITDL--VERKDSLTFKANFLEQALDLPV 269

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G++   NA++A+ + +  G+    + +  + L +   R E+    + G  +  D Y   
Sbjct: 270 TGKYNATNAMIASYVALQEGVSEEQIRQAFQDLELTRNRTEWKKA-ANGADVLSDVYNAN 328

Query: 366 SNSLEMILKNIRTITS---GRIIVVFG 389
             ++++IL+    I +   G+ I V  
Sbjct: 329 PTAMKLILETFSAIPANEGGKKIAVLA 355


>gi|210622333|ref|ZP_03293102.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
 gi|210154321|gb|EEA85327.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 18/175 (10%)

Query: 186 SVEASSHG------LDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +V+A++ G      L   +L+ IK    S +   N+  DH++ H T + Y +AK R+F  
Sbjct: 156 AVQAANEGASFVTELSSFQLESIKDFKPSVSAVLNITEDHMNRHHTMENYIDAKARVFMN 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +   + Y D+      + RA    C   +V +  +   L+K   + N   +    E
Sbjct: 216 QDKNDFCVLNYDDE------LTRALAEKCNA-NVVFFSRLEKLEKGIYVENGDIIIDIDE 268

Query: 297 GKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   +    LPG   + N + AA +    GID  ++ E L+    V  R EFV
Sbjct: 269 KINLMKVCELSLPGGHNLENCMAAAAMAYVSGIDIEVIREVLKTFKAVEHRLEFV 323


>gi|157092732|gb|ABV22538.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 856

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D  IV +D+
Sbjct: 742 VDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDD 801

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                P    +E+I      ++   R E+I    + +NK
Sbjct: 802 DTRGRPRGSASELITKGITQVKPDARYESILDETQAINK 840


>gi|226357454|ref|YP_002787193.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319444|gb|ACO47439.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 886

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 50/387 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GKS+ A  V  I + +G  +   G T++   +    ++ T        A   
Sbjct: 480 IISITGTNGKSTTARMVAHIMRHAGKVT---GLTTSNGIYVDGEQILTGDTTGPKSAKVI 536

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235
           LS + V    +E +  G+ +  L   +   G+  N+  DH+           A ++ L  
Sbjct: 537 LSDRNVEVAVLETARGGILREGLGFDRCDVGAVLNIQPDHLGVKGIDTVEDLAWVKSLIV 596

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCA-------- 284
           E++     +++ ADD  +  +    H A  R+     QG      HL+   A        
Sbjct: 597 EVVTDSGTSVLNADDPLTWAMR---HQARGRLALFSMQGGPTAPEHLRAHIADGGLALVR 653

Query: 285 ----------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                     ++   Q T  +  +D         +  + NAL AA + +A  I+  ++  
Sbjct: 654 EGTVVGDELVLYEDGQRTPLMRARDIPATLGGFAKVNIQNALAAAAMAVAQHIELPVIRA 713

Query: 335 HLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMI---LKNIRTITSGRIIVV 387
            L          PGR      +    R+ +DYAH  + LE +   + ++R    GR+I V
Sbjct: 714 ALSSFSTSFEQSPGRLNLY--DGHPFRVLLDYAHNPSGLEYLGDLVAHLRP-ARGRVIGV 770

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--EKIR----AEIIHGIPGFIE 441
            G  GDR       MG++A    D  I+ +D+ R   P  E  R      +  G P   E
Sbjct: 771 LGVAGDRRDADMRQMGELAARAFDELIIREDDLRRGRPAGEGARHVAEGALASGFPA--E 828

Query: 442 KGNRI----EAIRTAIEMLNKQDVLVV 464
           + + I    EA+  A+ M  + D++V+
Sbjct: 829 RLHTILPEPEAVSAALSMARQGDLVVI 855


>gi|71066305|ref|YP_265032.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter arcticus
           273-4]
 gi|109892725|sp|Q4FQW0|MURC_PSYA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71039290|gb|AAZ19598.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter arcticus
           273-4]
          Length = 479

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 11/191 (5%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +A   TN+ +DH++ +        A    F + +P    A++  DD    E+     + G
Sbjct: 190 MAAIVTNIDQDHMETYGNSFDKLKAAYIQFLQNMPFYGLAVVCGDD---PELYAMIDDIG 246

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGL 321
             VL+ G +  F  ++ V  +    +   +V  +D + L     +PG   VYNAL A  +
Sbjct: 247 RPVLTFGLE-PFNDVQAVDLVTEGTKTHFTVLRRDHEPLRLTLNIPGVHNVYNALAAITM 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYV--DYAHTSNSLEMILKNIR- 377
               G+D A +   L+K   V  RFE         G + +  DY H    ++  +K  R 
Sbjct: 306 ATDEGVDDAAITRALQKFEGVGRRFEQHASVTIDDGDVLLIDDYGHHPKEVDATIKAARQ 365

Query: 378 TITSGRIIVVF 388
           +    R++++F
Sbjct: 366 SFPERRLVMLF 376


>gi|89067826|ref|ZP_01155270.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
 gi|89046424|gb|EAR52480.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
          Length = 464

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+++  T++A        F   +P    A+   D    + ++ R  +   RV++
Sbjct: 184 TNIDPEHMEHWGTEEA-LKKGFYDFVSNIPFYGLAVCCTDHPDVQGLVSRITDR--RVVT 240

Query: 270 VGYQGKFIHLKKVCAIHNK--QQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIA 324
            G+  +   ++ +   ++K   +  I+++G+     D   P+PG+  V NAL A  +   
Sbjct: 241 FGFNAQ-ADVRAINLTYDKGVAKFDIALQGEGTVIEDCSLPMPGDHNVSNALSAVAVARH 299

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+    + E L     V  RF  VG    G  I  DY H    +  +LK  R  T GR+
Sbjct: 300 LGMKRDEIREALAAFGGVNRRFTRVGEVG-GVAIIDDYGHHPVEIAAVLKAARQATEGRV 358

Query: 385 IVV 387
           I V
Sbjct: 359 IAV 361


>gi|240144337|ref|ZP_04742938.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|257203680|gb|EEV01965.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|291540809|emb|CBL13920.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           XB6B4]
          Length = 459

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 125/339 (36%), Gaps = 48/339 (14%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAV 120
           I  G +A  ++    L  ++A IR + P       R    L  + L G+   +  N +AV
Sbjct: 57  IFYGQKAENLTDGIDLIVYTAAIREDNPEYAAAKERSIPMLSRAELLGQIMDNYNNSIAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYL 177
            GT GK++  S + QI     L + +  PT ++       + N     S I++++A  Y 
Sbjct: 117 AGTHGKTTTTSMISQI-----LLAAKADPTISVGGILKAIEGNIKVGKSDIFVSEACEYT 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S    H     S                    N+  +H+D+ +  Q   N+  R F   
Sbjct: 172 NS--FLHFYPRYSV-----------------ILNVEAEHLDFFKDIQDIRNS-FRKFAGN 211

Query: 238 LPKESPAIIYAD-DAYSK-------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             K+   II  + + Y++       +V+    N  C      Y       +  CA     
Sbjct: 212 TKKDGAIIINGEIENYTELTSGLDPQVITFGLNDSCDY----YPSDITFDETACASFTAM 267

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                V     D    +PG   V NAL A  L + +GI +  +L  L        RF++ 
Sbjct: 268 HHGTPV----MDVKLHVPGMHNVSNALAAIALSLDLGISTDAILAGLSAFGGADRRFQYK 323

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           G    G  I  DYAH    +   L   +     R+++ F
Sbjct: 324 GC-VDGVTIIDDYAHHPTEIRATLTAAKNYPHKRLVLAF 361


>gi|160937437|ref|ZP_02084798.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439506|gb|EDP17256.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
          Length = 472

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 129/325 (39%), Gaps = 56/325 (17%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A I  + P       +    L  + L G+   N    +A++GT GK++  S +  I  
Sbjct: 88  YTAAIHEDNPEFRAARDQGLPMLSRAELLGELMRNYKEAIAISGTHGKTTTTSMLTDI-- 145

Query: 139 RSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
              L +  + PT ++    +D     R+  P  +++ +A  Y +S    + ++E      
Sbjct: 146 ---LLAGDLDPTISVGGILKDIGGNIRVGGPD-LFVTEACEYTNSFLSFYPTMEV----- 196

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                           N+  DH+D+ +  +       RLF E LP +   ++ +     +
Sbjct: 197 --------------ILNVEEDHLDFFKDIED-IRHSFRLFAEKLPAKGLLVVNSGIEKVE 241

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----------ISVEGKDFDFL- 303
           E+ +      CRV++ G        K + + +  + +T          + V+G+    + 
Sbjct: 242 EITRGLR---CRVVTFG--------KDLSSTYTARNITYDGFARPSYDLVVQGETVTRIT 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  VYN+L A  + + +G+    ++  L +      RFE  G  + G  +  DYA
Sbjct: 291 LGVTGEHNVYNSLAAIAIALELGVGFDAIMSGLGRFTGTDRRFEKKGEVA-GVTVIDDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388
           H    ++  L   R     ++  VF
Sbjct: 350 HHPQEIKATLAAARNYPHRKLWCVF 374


>gi|157092729|gb|ABV22536.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 856

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D  IV +D+
Sbjct: 742 VDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDD 801

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                P    +E+I      ++   R E+I    + +NK
Sbjct: 802 DTRGRPRGSASELITKGITQVKPDARYESILDETQAINK 840


>gi|83949453|ref|ZP_00958186.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
 gi|83837352|gb|EAP76648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
          Length = 466

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 25/156 (16%)

Query: 101 FLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           F   FA++ + +   P  ++AVTG++GKS+ ++ +  +   +G +S   G    I     
Sbjct: 104 FFRSFAAQGFDEFDTPPRVVAVTGSNGKSTTSALIHHVLSEAGRASQLAG---NIGRGVL 160

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D  +  P               GV  V +E SS+  +  R   +      FTNL  DH+D
Sbjct: 161 D--IDPPE------------DGGV--VVLELSSYQTELAR--ALTPDVAVFTNLSPDHLD 202

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            H     YF AK RLF E  P    A+I  D+A  +
Sbjct: 203 RHGGMGGYFAAKRRLFSEGGPDR--AVIGVDEAEGR 236


>gi|126735382|ref|ZP_01751128.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. CCS2]
 gi|126715937|gb|EBA12802.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. CCS2]
          Length = 465

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 130/328 (39%), Gaps = 40/328 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GAE IV+SSA    +          + VV        L   RL     ++ +AV GT G
Sbjct: 69  EGAEVIVISSAIKPGNPELDAARAKGMPVVRRAEMLAELM--RL-----KSNVAVAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  +    G+    I     I ++  + R+                 QG   V
Sbjct: 122 KTTTTTMVAALLDEGGIDPTVIN-GGIIHAYGSNARM----------------GQGEWMV 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL     I    TN+  +H+++  T++A  +     F   +P    A+
Sbjct: 165 -VEADESDGTFNRLPATIAI---VTNIDPEHMEHWGTEEA-LHQGFYDFVSNIPFYGLAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDF-- 300
              DD   + ++ +  +   RV++ G+  +     +   +H K  V    I+++ +D   
Sbjct: 220 CCTDDPDVQSLVGKITDR--RVVTYGFNAQAD--IRAVNLHYKAGVAHFDIALQAEDAVI 275

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I 
Sbjct: 276 EGCALPMPGDHNVSNALSAVAVARHLGMKKDEIRAALAGFKGVNRRFTKVGEID-GVAII 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV 387
            DY H    +  +LK  R  T GR+I V
Sbjct: 335 DDYGHHPVEIAAVLKAARQSTEGRVIAV 362


>gi|239832311|ref|ZP_04680640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824578|gb|EEQ96146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           intermedium LMG 3301]
          Length = 467

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 52/281 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + SG    Q+G     +       LT   P          
Sbjct: 117 IAITGTNGKSTTTALIAHIIKASG-RDMQLGGNIGTAI------LTLEPP---------- 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q      VE SS+ +D      +   AG   NL  DH+D H + + Y   K    E L
Sbjct: 160 --QANRFYVVECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
           +     AI+  DD Y + +  R +  G  V+ +  +     G F    K+    + +   
Sbjct: 212 VAASDTAIVGVDDQYCEAIADRLYRDGVHVVRISKEKQLGKGYFADGAKLLWAQDGEVDE 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK-LHVVPG---RFE 347
           I S+EG     +  L G     NAL A   C+++G    L LE +   L+  PG   R E
Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIAACLSVG----LSLEEIHAGLNSFPGLAHRME 322

Query: 348 FVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382
            VG   RG  ++V+ +  +N      +L    +NI  I  G
Sbjct: 323 QVG--HRGKVLFVNDSKATNAEATAPALSSFPQNIYWIAGG 361


>gi|229086477|ref|ZP_04218649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
 gi|228696794|gb|EEL49607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
          Length = 450

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 21/166 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
            +F NL   H+DYH T++ Y  AK  +F+    K   ++I ADDA   +VM  + N+ G 
Sbjct: 184 AAFLNLFEAHLDYHGTKEEYGLAKANIFKN-QTKADYSVINADDA---DVMALSENSKGQ 239

Query: 266 RVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +VL     V   G +I   K  A++ K +  + +  KD      LPG+  + N L A  +
Sbjct: 240 KVLFSATKVIEDGAYI---KEDALYFKGEKVVDI--KD----IVLPGKHNLENILAAMSI 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
               G+ +  ++  L++   V  R E+V T N+R  + Y D   T+
Sbjct: 291 AKLSGVANEAIIAVLKRFTGVKHRLEYVTTLNNR--KFYNDSKATN 334


>gi|289704957|ref|ZP_06501372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
 gi|289558293|gb|EFD51569.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
          Length = 527

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 104/254 (40%), Gaps = 40/254 (15%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+   + + +TGT+GK++  + V+ I +  G  +   G   T              P+  
Sbjct: 143 GRKTADWVCLTGTNGKTTTVTMVEAILRADGRRAVACGNVGT--------------PVLD 188

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           A        +G   +++E SS  L  H   G+   + +  NL  DH+D+H + + Y  AK
Sbjct: 189 A----IRDPEGFDVLALELSSFQL--HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAAK 242

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAI---- 285
            +++          +    D  ++ +++RA    GCR  ++G+      L  +  +    
Sbjct: 243 GKVYAN---TRVACVFNEQDPVTRTLVERADVQEGCR--AIGFTTDTPGLSDIGVVDGIL 297

Query: 286 ------HNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                  N++   I++ E  D   L P+     V NA  AA L  A+G+  A V E L  
Sbjct: 298 VDRAFLDNRRHEAIALAERAD---LGPVAPRHTVANAAAAAALTRAVGVSPAAVAEGLRS 354

Query: 339 LHVVPGRFEFVGTN 352
                 R + V T+
Sbjct: 355 YDRGEHRIQLVATS 368


>gi|254463263|ref|ZP_05076679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2083]
 gi|206679852|gb|EDZ44339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 466

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 108/286 (37%), Gaps = 34/286 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+ ++ +  + + +                   NR T  +       L  
Sbjct: 121 VVAVTGSNGKSTTSALIHHVLEHA-------------------NRPTQLAGNIGRGVLDI 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             +     V +E SS+  D  R   +      FTNL  DH+D HQ    YF AK RLF E
Sbjct: 162 DPAIDGEVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHQGMGGYFAAKRRLFAE 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             P+ +   I  D+               RV+ +  + K           NK  ++   +
Sbjct: 220 GGPERAIIGIDEDEGLYLAGQMAEGPQDDRVIRISVERKLTDFGWAV-FANKGFLSEYRK 278

Query: 297 GK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           G+     D   +  LPG     NA  A  +C  +G+   ++         +P R + V  
Sbjct: 279 GRQIGSIDLRAIKGLPGAHNHQNACCAYAVCRTLGLAPRVIEAGFASYPGLPHRSQIVAD 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               G  YV+ +  +N ++   K +      R I    CGG   +G
Sbjct: 339 VD--GVTYVNDSKATN-VDSAAKALGAFKKIRWI----CGGLEKEG 377


>gi|157092717|gb|ABV22528.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 870

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D  IV +D+
Sbjct: 742 VDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDD 801

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                P    +E+I      ++   R E+I    + +NK
Sbjct: 802 DTRGRPRGSASELITKGITQVKPDARYESILDETQAINK 840


>gi|254509590|ref|ZP_05121657.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
 gi|221533301|gb|EEE36289.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
          Length = 469

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 10/125 (8%)

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  R  ++ Y+G   H      IH + +  + +EG       P+PG+  V NAL A  + 
Sbjct: 248 ADVRAENLTYKGGVAHFD----IHLQYEDKV-IEG----CTLPMPGDHNVSNALSAVAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+ +A + + L     V  RF  VG    G  I  DY H    +  +LK  R  T G
Sbjct: 299 RHLGMKTAQIRDALANFGGVNRRFTKVGEID-GVTIIDDYGHHPVEIAAVLKAARQATEG 357

Query: 383 RIIVV 387
           R+I V
Sbjct: 358 RVIAV 362


>gi|238786721|ref|ZP_04630522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
 gi|238725089|gb|EEQ16728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
          Length = 438

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 42/238 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ + +G   +Q+G    I                   AL+ 
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIG----------------VPALTL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +    V +E SS  L+      ++  A +  N+  DH D Y    Q Y  AK+R++E
Sbjct: 148 LKQEN-QLVVLELSSFQLET--TSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  V      A  R +S G      HL       NKQQ  I +
Sbjct: 205 ----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGEIWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +    L      L G     NAL A  L  A+GI  +  L+ L     +P RF+ V
Sbjct: 250 RVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLV 307


>gi|329944585|ref|ZP_08292725.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328530138|gb|EGF57021.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 514

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 118/297 (39%), Gaps = 56/297 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT GK++    +  I +  GL++  +G             + TP       A+  +
Sbjct: 134 LTLTGTDGKTTTVGMLSAILEAQGLTAPAVG------------NIGTP-------AIEAV 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +     ++VE SS  L  H    +  +A +  NL  DH+D+H  ++AY   K R++   
Sbjct: 175 LAGSADALAVELSSFQL--HTTRTLSPLASACLNLAADHLDWHGGREAYAADKARVYS-- 230

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-------- 287
             +   A +Y  ADDA    V +     GCR  +VG+      L +V  + +        
Sbjct: 231 --RTRLAAVYNVADDATQDMVRQADVVEGCR--AVGFTLTTPGLGQVGMVEDLLVDRAFH 286

Query: 288 KQQVTISVE---GKDFDFLFP------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            ++ +  +E     D   L P      LP          AA L  A G+D+  V+  L  
Sbjct: 287 AERRSSGIELATSADLAHLAPGGRTENLPSHLLADALAAAA-LARAAGVDAEAVVAGLRA 345

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGD 393
               PG    V      G  +VD +  +N  S E  L ++      R   V+ CGGD
Sbjct: 346 YS--PGAHRIVTVAEADGVTWVDDSKATNPHSAEAALTSLP-----RGTGVWICGGD 395


>gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
 gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
          Length = 825

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 144/346 (41%), Gaps = 30/346 (8%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+   + DGH +I     +G    VV+   +  D   +  S    L V +T + L  
Sbjct: 41  LFFALKTKRNDGHNYIADLYRRGVRNFVVTDVPNNYD---SAYSGANFLKVIDTLEALQR 97

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A R        I+ +TG++GK+ V  ++ Q      L S  +  T +  S+  ++++  
Sbjct: 98  LAERHRDAFDIPIVGITGSNGKTMVKEWLYQ------LMSPDMYVTRSPRSY--NSQVGV 149

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P  ++L    + L   G+    +  S  G      D I+      TNLG  H +  ++ +
Sbjct: 150 PLSVWLMDKQTRL---GIFEAGI--SEKGEMSALRDIIQPTIAVLTNLGSAHQENFESAE 204

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKV 282
                K  LF      ++  I+Y ADD     V+      G R+  S   +   +++K V
Sbjct: 205 EKCREKAILFH-----DAKTIVYHADDKIVAGVVASLDYRGERLYWSTSDRQAPMYIKAV 259

Query: 283 CAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                   +T I   G +  +  P   +  V N++V A + + +G+D+  + E + +L  
Sbjct: 260 EKKETAATITYIYKGGIENWYSIPFIDDASVTNSIVCATIALHLGLDADKLDERMLQLEP 319

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMILK--NIRTITSGR 383
           V  R E      R G   ++ ++ S  NSL++ L   N R    GR
Sbjct: 320 VAMRLEV--KEGRHGCTLINDSYNSDFNSLDIALDFMNRRPDHQGR 363


>gi|78213668|ref|YP_382447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9605]
 gi|118595700|sp|Q3AHP0|MURD_SYNSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78198127|gb|ABB35892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9605]
          Length = 461

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 114/287 (39%), Gaps = 42/287 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT--STISSFAQDNRLTTPSPIYLAKALS 175
           + +TGT+GK++V   +  + + +GL++   G    S      Q      P P +L   LS
Sbjct: 113 IGITGTNGKTTVTHLLSHVLEAAGLTAPMGGNIGLSAAELACQIGSGAKPRPDWLVMELS 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +    V+ +                  G +T L  DH++ H + +AY   K  L E
Sbjct: 173 SYQIEAAPAVAPK-----------------IGIWTTLTPDHLERHGSLEAYRAIKRGLLE 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQV 291
               +   A+  ADD   ++  + + N G  V S G     Q   + +     + N    
Sbjct: 216 ----RSECALFNADDPDLRQ-QRSSWNRGTWVSSEGAHPDNQPADLWIDDEGMVRNNTTR 270

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             + +      +  +PG     N L+     +  G+    + + L     VP R E +GT
Sbjct: 271 LFAAD------VLAMPGRHNRQNLLLVTAAALEAGLSPQQIADALRTFPGVPHRLEQLGT 324

Query: 352 NSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            + G  ++ D   T+ ++ E+ L+ ++    G ++V+   GG   QG
Sbjct: 325 LA-GASVFNDSKATNYDAAEVGLRAVQ----GPVVVL--AGGQTKQG 364


>gi|224826076|ref|ZP_03699179.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
 gi|224601713|gb|EEG07893.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
          Length = 455

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 166/409 (40%), Gaps = 62/409 (15%)

Query: 67  GAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           GAE +VVS   ++   + A  R     +V D     + LFA  + G   + ++A+TG++G
Sbjct: 67  GAEMLVVSPGVAVATPAIAAFRRAGGEVVGD-----VELFARAIAGSGSK-VIAITGSNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           KS+V S V  +C+++GL +   G     +     +   +   P      LS    +  T 
Sbjct: 121 KSTVTSLVGHLCRQAGLDTVLAGNIGLPVLDALGEREASGKRPDVWVLELSSFQLETTTS 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++ +A+                 +  N+  DH+D +     Y ++K  +F          
Sbjct: 181 LNADAA-----------------TVLNISEDHLDRYADLLDYAHSKTAVFN----GRGVQ 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKD-F 300
           ++  DDA  + +++  H             ++  LK+      +Q      ++V G+  F
Sbjct: 220 VLNRDDALVRAMVRPGHAQ-----------RWFSLKETADYALRQDAGRYWLTVAGEAVF 268

Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           D     L G     NAL A  L  AIG+  A +LE L+    +  R EFV      G  Y
Sbjct: 269 DCAEMSLQGLHNAANALAALALTEAIGLPRAALLEGLKTFTGLAHRVEFVAEVH--GVRY 326

Query: 360 VDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +D +  +N  + E  L  +      R +V+   G  + Q   P+    A     + ++  
Sbjct: 327 IDDSKGTNVGATEAALNGMT-----RPVVLIAGGDGKGQDFSPLKPACARIARAVLLI-- 379

Query: 418 DNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                 D  KIRA ++ G+P   ++     EA R A  +    DV++++
Sbjct: 380 ----GRDAGKIRA-VLEGLPLPIVDCATLEEATREAARLAEAGDVVLLS 423


>gi|254509131|ref|ZP_05121231.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
 gi|219547928|gb|EED24953.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
          Length = 486

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 112/285 (39%), Gaps = 46/285 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  EL+P+ S  +I     +S++   R  N        G QGKF            
Sbjct: 234 IDDPVVRELVPRISRQVITY--GFSEDADVRIDN----YRQEGQQGKF------------ 275

Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              T+  EGK D +    +PG     NA  A  +     I    +L  +        RF+
Sbjct: 276 ---TVIREGKADLEITLNIPGRHNALNASAAIAVATEDDISDEAILNAMAGTQGTGRRFD 332

Query: 348 FVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +G   T +    +  DY H    +E+ ++  R      R++++F
Sbjct: 333 HLGEFETGNGNAMLVDDYGHHPTEVEVTIQAARNGWEDKRLVMIF 377


>gi|150397282|ref|YP_001327749.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium medicae
           WSM419]
 gi|166224733|sp|A6UB84|MURC_SINMW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150028797|gb|ABR60914.1| UDP-N-acetylmuramate--alanine ligase [Sinorhizobium medicae WSM419]
          Length = 471

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NA  A  +   +GI    +   +     V  RF   G  + G RI+ 
Sbjct: 277 DLRLPMPGRHNVSNATAAVAVAQRLGIKPEDIARGIASFGGVKRRFTLTGEWN-GARIFD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    ++ +L+  R    GRI+ V
Sbjct: 336 DYGHHPVEIKAVLRAAREACQGRIVAV 362


>gi|296122915|ref|YP_003630693.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015255|gb|ADG68494.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
          Length = 896

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 27/269 (10%)

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +G T T   +  D R+ T        A + LS+  V    +E +  G+ +  L   +   
Sbjct: 518 VGMTCTDGVYIDDRRIDTGDCSGPRSARTVLSNPTVEAAVLETARGGILREGLGFDRCHV 577

Query: 207 GSFTNLGR-DHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              TN+G  DH+     +T +     K  + E + P +  A++ A+D  +   +  A   
Sbjct: 578 AIVTNIGEGDHLGMAGIETAEQLGRVKRVIVENVSP-DGHAVLNAEDPIT---LAMADYC 633

Query: 264 GCRVLSVGYQGKFI----HLKKVC-AIHNKQQVTISVEG---------KDFDFLFPLPGE 309
             +V+     G       HL K   A++ +Q   I+ EG          +    F     
Sbjct: 634 PGKVILFARSGDHPAVKSHLAKGGKAVYTQQNWLIAAEGSWSARVASLNNVPLTFSGLIG 693

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQV N + +     A+GI    +   LE     +   P RF  +   + G  + +DY H 
Sbjct: 694 FQVDNTMASMAAAWALGIPFETIRSALETFSSDIRKAPARFNVL--EAAGATLIIDYGHN 751

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           S+++  +L  I  +  GR  +V+   GDR
Sbjct: 752 SSAIVALLDAINQLPHGRRRIVYTAAGDR 780


>gi|237743960|ref|ZP_04574441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           7_1]
 gi|229432991|gb|EEO43203.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           7_1]
          Length = 454

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 49/248 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 115 IIAITGTNGKSTTTAKISDMLNYAGYKAAYAGN--------------------IGRSLSE 154

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ +++   Y++ K    
Sbjct: 155 VLLKEKDLDFISLELSSFQLEN--IENFKPYISMIINMGPDHIERYKSFDEYYDTKFN-- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQV 291
             +   ++  + + ++    E+ KRA     + +SV    K   F+   K+C  H K  +
Sbjct: 211 --ITKNQTEDLYFIENIDDVEIEKRAKQVKAKRISVSKFKKADIFVENDKIC--HGKDSI 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---------ALVLEHLEKLHVV 342
                  D D L  L G   + N L        + ID          A  LEH  +L   
Sbjct: 267 I------DVDKL-SLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFN 319

Query: 343 PGRFEFVG 350
            G+ +F+ 
Sbjct: 320 YGKLKFIN 327


>gi|237742550|ref|ZP_04573031.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|229430198|gb|EEO40410.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
          Length = 468

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-L 268
           TN+  DH+D H       N K    E +   +  AII  D    KE + R       +  
Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIEFISHTQKEAIICMDCENLKEAITRLPKGKSVITY 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+  +   I  K +     K    + +  +   +F   +PGE  + N+L    L +   +
Sbjct: 238 SIKDENASIFAKNIRITDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVIYLALKFRV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + E L K      R++ +         G  ++  RI  DYAH    ++  LK I++
Sbjct: 298 SKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKKVRIIDDYAHHPTEIKATLKAIKS 357

Query: 379 ITSGRIIVVF 388
           I + R++ +F
Sbjct: 358 IDTSRLVAIF 367


>gi|255038275|ref|YP_003088896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
 gi|254951031|gb|ACT95731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
          Length = 434

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 139/368 (37%), Gaps = 39/368 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           RK  +VS+D+R I  G IF A+ G+K DG+ +  +A+ +GA       AY++ D   T+ 
Sbjct: 13  RKGAKVSTDTRQITDGCIFFALKGDKFDGNQYAAEALQKGA-------AYAVVD-DPTVA 64

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +    L+ ++    L   A          ++A+TG++GK++    + ++       S + 
Sbjct: 65  NGDRFLLFEDGLTALQDLARHHRKTLDIPVVALTGSNGKTTTKELIAKVL------SMKF 118

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206
              +T  +   +N +  P        L+ LS     H           Q  +  +  IA 
Sbjct: 119 NTYATRGNL--NNHIGVP--------LTVLSIDPAKHEMAVIEMGANHQQEIALLSSIAQ 168

Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN+G+ H++           K  LF+ L  K+    + +      +++ +    
Sbjct: 169 PTHGLITNIGKAHLEGFGGVSGIIKGKGELFDYLSKKKGTVFVNSTQDVIMDMVSKRRAF 228

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G  V                 I     V  S  GK       LPG +   N   A  +  
Sbjct: 229 GEIVFYCSENSPI----NPTLIEENPNVVFSNGGK--TVTTHLPGRYNFDNICAALAVGK 282

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             G++ A   E +        R + V  GTN+    I   Y    +S+   + N   + +
Sbjct: 283 HFGVEDADAYEAVATYEPDNNRSQIVKKGTNT---VIMDAYNANPSSMAAAVANFGRMEA 339

Query: 382 GRIIVVFG 389
            R I++ G
Sbjct: 340 ARKILILG 347


>gi|157413927|ref|YP_001484793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388502|gb|ABV51207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 478

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 29/239 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + +TGT+GK++V   +  I   +GL           + FA +  + TP    L K   
Sbjct: 121 NWIGITGTNGKTTVTHLLSHILCDTGL----------YAPFAGN--IGTP----LCKYAY 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              ++ +  V  E SS+ ++      +K   G +T    DH++ H+T + YFN K  L E
Sbjct: 165 SKKTEKIDWVVAELSSYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSLLE 222

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +S   IY  D  +      + + G  + +   +  FI     C      Q  I  
Sbjct: 223 -----KSDFRIYNYDDKNLRNHYSSLSRGVWITTSFDKSNFIQ----CDYWIDDQAFIVE 273

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            GK    L  F L G   + N L+       +G+    + + L     +P R E +  N
Sbjct: 274 RGKKLFKLEHFSLKGMHNLQNLLLVIAAARKVGLSGKEIKDSLSNYKQLPHRMETIYKN 332


>gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 454

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 16/138 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DS+ I  G +FV I+  K DGH ++ +A+ +GA A +   +Y   D    I    PI
Sbjct: 30  VCIDSKKITKGNLFVPIIRVK-DGHDYVKEAMEKGAAASLWKKSYG--DPPKGI----PI 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC-------QRSGLSS 144
           + VD+T   L   A R Y K     ++ +TG++GK+ V   +  I        +  G  +
Sbjct: 83  IFVDDTLLALQKIA-RYYRKTSNVKVIGITGSNGKTMVKDIISTILSTTYRVHKTKGNLN 141

Query: 145 FQIGPTSTISSFAQDNRL 162
            QIG   TI    QD   
Sbjct: 142 SQIGLPLTILEMKQDTEF 159


>gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
 gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
          Length = 842

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 47/342 (13%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY---------- 77
           I+ + +DSR +      +F A+   + DG  +IP   ++G    VVS             
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYSRGVRNFVVSKETYKAIENGQLI 83

Query: 78  ---SLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
              S+Q  D  +++      LVV N  K L   A +   +    ++ +TG++GK+ V  +
Sbjct: 84  IDDSIQRDDAQSSLIPQLNFLVVANPLKALQKLAEQHREQFQIPVIGITGSNGKTIVKEW 143

Query: 133 VQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVE 188
           + Q+          + P   I  S  + ++++  P  ++     S L+    G++ +   
Sbjct: 144 LHQL----------LSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGISEMGEM 193

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY 247
            +   +       IK   G  TN+G  H      Q+ +F+ + +  E+L L K    +IY
Sbjct: 194 RALQNI-------IKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKNCDVVIY 240

Query: 248 -ADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD + S  V K   +A     S     + + + KV    +   ++      D  F+ P
Sbjct: 241 NGDDEFISNCVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVISYRYLEMDNTFMLP 300

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +  + N+L     C+ + + +  + E +  L  V  R E
Sbjct: 301 FIDDASIENSLNCLAACLYLMLPAEKITERMTTLEPVAMRLE 342


>gi|153009075|ref|YP_001370290.1| UDP-N-acetylmuramate--L-alanine ligase [Ochrobactrum anthropi ATCC
           49188]
 gi|166224711|sp|A6WZQ7|MURC_OCHA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151560963|gb|ABS14461.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum anthropi ATCC
           49188]
          Length = 468

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG+  V NA  A  +   +GI +  +   L     V  RF   GT + G  I+ 
Sbjct: 276 DLRLPMPGQHNVSNATAAIAVAHELGISADDIRRGLGSFGGVKRRFTHTGTWN-GVEIFD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    +  +LK  R  T GR++ +
Sbjct: 335 DYGHHPVEIRAVLKAAREATKGRVVAI 361


>gi|21241550|ref|NP_641132.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|23821877|sp|Q8PPA7|MURC_XANAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21106901|gb|AAM35668.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 477

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 124/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V       + T+ + EG     
Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPCMRFTLRLPEGTTTPV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+    +   LE    +  RF  +G  T S G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTSTGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    LE +    R      R++V F
Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371


>gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
 gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
          Length = 821

 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 28/225 (12%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I+ + +DSR +      +F A+   + DGH +IP    +G    V++        +A+  
Sbjct: 24  IDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPDLYQKGVRNFVINEIPE----AASSY 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++   L+V N  K L   AS+   +    ++ +TG++GK+ V  ++ QI          +
Sbjct: 80  TDANFLIVPNPLKSLQRLASKHREQFQVPVIGITGSNGKTVVKEWLYQI----------L 129

Query: 148 GPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            P  TI  S  + ++++  P  ++L    + L   G+    +  S  G  +     I+  
Sbjct: 130 SPDRTITRSPRSYNSQIGVPLSVWLMNEHTEL---GIFEAGI--SEMGEMEALRPIIQPT 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            G  TN+G  H +   + Q     K++LF     K+   I+Y  D
Sbjct: 185 IGILTNIGGAHQENFSSVQDKCMEKLQLF-----KDCDVIVYNGD 224


>gi|332525742|ref|ZP_08401889.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332109299|gb|EGJ10222.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 861

 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 164/395 (41%), Gaps = 52/395 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF +   G+ P  ++AVTGT+GK++V+  +  +   +G   +++G T+T   +   +++ 
Sbjct: 460 LFPAGQDGRIP--VVAVTGTNGKTTVSRLIAHLFNAAG---YKVGMTNTDGVWVDGHQID 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DYH 220
           +        A + L+        +E +  G+ +  L   +      TN+G  DH+  +Y 
Sbjct: 515 SGDCSGPKSARNVLAHPDTEAAVLETARGGMLREGLGFDRCQVAVVTNVGAGDHLGLNYI 574

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T +     K R+  + + +   A++ A D  + ++ +  H  G  +L     G   HL 
Sbjct: 575 TTVEDLAVLK-RVIVQNVAESGYAVLNAADPITLQMAQ--HCPGGVIL-FAVDG---HLP 627

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGE-------------------FQVYNALVAAGL 321
            + A   +   T+ V+G   D +  + G                    FQV NAL A   
Sbjct: 628 AMVAHRAQGGRTVFVDG---DAIVAVNGSARARVPLREVPLTRNGTIGFQVENALAAVAA 684

Query: 322 CIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
               G+     SA +   +   H  PGRF  +  + RG  +  DY H ++++  ++  + 
Sbjct: 685 AWGCGLSFDAVSAGLASFVNDAHNAPGRFNVM--DYRGATVIADYGHNADAMRALVGAVE 742

Query: 378 TITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            + + R  VV    GD RD+  R     +     ++ +  D   R     ++ A +  G+
Sbjct: 743 AMPAQRRSVVISAAGDRRDEDIREQTQILGAAFDEVLLYQDAAQRGRADGEVIALLREGL 802

Query: 437 PGFIEKGNRIE-------AIRTAIEMLNKQDVLVV 464
            G   +  R+E       AI  A+E L   D+ +V
Sbjct: 803 RG-APRTRRVEEIHGEFVAIDQALESLQPGDLCLV 836


>gi|310287099|ref|YP_003938357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
 gi|309251035|gb|ADO52783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
          Length = 476

 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S                     T   S+    N L  P+   + KA
Sbjct: 100 PAPWVGITGTNGKTST--------------------TEMTSAMLCANGLVAPAVGNIGKA 139

Query: 174 LSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +S+ +       + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K +
Sbjct: 140 VSHAAVDPDNDALCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSK 197

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCR 266
           +F  +       +  ADD     +   AH A GCR
Sbjct: 198 VFRNV---RRALVFNADDRRVSALASAAHTAEGCR 229


>gi|46446887|ref|YP_008252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanine-ligase murF [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400528|emb|CAF23977.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine-ligase murF
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 445

 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-RSNTPILV 94
           DSR  +   +FVA+ G   DGH ++ +   +GA A +V   Y    F   + R+  P+L 
Sbjct: 30  DSRLTKKNEVFVALRGEHVDGHAYLNEVKQKGALAAIVDQNYQGPVFGMHLFRTENPLLA 89

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-------SGLSSFQI 147
                  L + A +   K    ++AVTG+ GK++   F++ + ++        G S+ Q+
Sbjct: 90  -------LQMLAQKCLEK-TSRVVAVTGSIGKTTTKEFIKTLLEQRYVTAASQGNSNSQV 141

Query: 148 GPTSTI 153
           G   T+
Sbjct: 142 GLPLTV 147


>gi|85707764|ref|ZP_01038830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
 gi|85689298|gb|EAQ29301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
          Length = 460

 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 148/387 (38%), Gaps = 93/387 (24%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA       P  ++ +TGT+GKS+  + V  I Q +G+ S   G             
Sbjct: 96  IELFARARADLLPHKVVGITGTNGKSTTVALVHHILQMAGIPSLLGG------------- 142

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                PI   + L+    +G   V V E SS+ +D      +     + TN+  DH+D +
Sbjct: 143 -NIGEPIMAQEPLA--PGEGGEGVYVLELSSYQIDL--TTSLDCEVAALTNITPDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
               AY  AK RLF+     +SP                      R L+V     F  L+
Sbjct: 198 DGFAAYAAAKERLFK----MQSP----------------------RNLAV-----FGSLE 226

Query: 281 KVCAIHNKQQVTISVEGK----DFDFL------FP-LPGEFQVYNALVAAGLCIAIGIDS 329
           +      ++Q+    EG+    D D L      +P L G   + N  VA  +   +G+  
Sbjct: 227 EPVGAIYRRQIEFRGEGRAQAADLDALRDRQANWPSLQGPHNLENVAVAVAIVEELGVTE 286

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A     + +   +P R E V      G ++++ +  +N          T  S   +  + 
Sbjct: 287 AQWSHAIPRFRGLPHRMEIVCEEE--GVLFINDSKATN----------TDASAPALAAYP 334

Query: 390 CG-GDRDQ--------GKRPIMGKIALDLADIAI---VTDDNPRSEDPEKIRAEIIHGIP 437
            G  DR +         K   +GK A  L DIA+   V +  PR        AE++ G  
Sbjct: 335 RGEADRPRIHWIVGGLAKEDGLGKCAEHLGDIAVAYTVGEAGPRF-------AELLEGEV 387

Query: 438 GFIEKGNRI-EAIRTAIEMLNKQDVLV 463
             +E+   + EA+R A +     DV++
Sbjct: 388 PKVERCELVSEAVRRAKDAAVAGDVVL 414


>gi|307707044|ref|ZP_07643841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
 gi|307617570|gb|EFN96740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKTEFDSRLITTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------ANHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS 140
           +   +
Sbjct: 121 LLSTT 125


>gi|119962409|ref|YP_947468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           aurescens TC1]
 gi|119949268|gb|ABM08179.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           aurescens TC1]
          Length = 524

 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 30/162 (18%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+   + L +TGT+GK++     + + Q +GL +  +G             + TP    L
Sbjct: 138 GRKTADWLTITGTNGKTTTVGMAESMLQAAGLKAIAVG------------NVGTPILDAL 185

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              + Y +       +VE SS  L  H    +  +A    N+  DH+D+H +  +Y   K
Sbjct: 186 RDPVDYDA------FAVELSSFQL--HWSHSLSPVASVCLNVAEDHVDWHGSYASYLADK 237

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVL 268
            +++E        A IY  +A   E  +   NA    GCR +
Sbjct: 238 AKVYE----NTQKAAIY--NAEQIETERMVENADVVEGCRAI 273


>gi|269219535|ref|ZP_06163389.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269210777|gb|EEZ77117.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 335

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 20/121 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L VTGT+GK++  S ++ I    GL    +G      + A+ +R                
Sbjct: 130 LCVTGTNGKTTAVSMIEAILDAGGLKGKAVGNVGN-PAVAEVSR---------------- 172

Query: 178 SSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  GV    +VE SS  L   R   +  +A    N+  DH+++H +++AY+ AK R++E 
Sbjct: 173 TDGGVAGAFAVELSSFQLRTTRT--MSPLASICLNIADDHLEWHGSREAYWRAKARVYER 230

Query: 237 L 237
           +
Sbjct: 231 V 231


>gi|229186153|ref|ZP_04313322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
 gi|228597329|gb|EEK54980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+    ++  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKN-QTEDDYSVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V+         LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|223986480|ref|ZP_03636481.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
 gi|223961542|gb|EEF66053.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
          Length = 535

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 114/278 (41%), Gaps = 26/278 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG+ GK+S  + +QQI      S        T +SF       TP  I +       
Sbjct: 192 IGITGSYGKTSSKNILQQILSEKFYS------LPTPASF------NTPMGITITIREQLK 239

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V    + A   G  +  +D ++   G  T++G  H++   +Q+     KM++ E+ 
Sbjct: 240 PTHEVFICEMGADHVGDIEQLMDFVQPQIGLVTSIGPQHLNTFGSQENIVTEKMKMIEK- 298

Query: 238 LPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV- 295
           LP     ++  D+    E+++  +    C +   G + + +  + V      Q  +  + 
Sbjct: 299 LPVTGFGVLNKDN----ELIRNYYIKNKCPIAWYGIEQEDVDYRAVNISFGPQGSSFDIH 354

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             EG D  F   L GE  + N L A  +   +G+    +   + ++  V  R E    N 
Sbjct: 355 TREGADIPFKTRLLGEHNIANILAAVAVGRHLGVSWEQLQSAVAQVRYVEHRLEVKKIN- 413

Query: 354 RGGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVVFG 389
             G  ++D A  SN +   M L+ ++T+   R IV  G
Sbjct: 414 --GYTFIDDAFNSNPVGSAMSLQVLKTMPGTRFIVTPG 449


>gi|118602740|ref|YP_903955.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|166224725|sp|A1AX27|MURC_RUTMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118567679|gb|ABL02484.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 469

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 114/288 (39%), Gaps = 35/288 (12%)

Query: 210 TNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           TN+  DH+     DY   + A+       F   LP     I+ ADD    E++   H   
Sbjct: 186 TNIDYDHMVTYDNDYQNLKDAFIK-----FSANLPFYGACIMCADDEGVNEILNSIHRP- 239

Query: 265 CRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +++ G+      + +++K+V  +     V      K       L G+  + N L A G
Sbjct: 240 --LITYGFNNGTDIQAVNVKQV-GMQMYFDVIYDKYTKQIPIKLNLIGKHNILNTLAAIG 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIR 377
           +C  + I + ++ + L     V  R +  G    N+    ++ DYAH    +  + ++++
Sbjct: 297 ICCELNIKTNIIQKALANFSGVARRLDHHGKLNINNAQVSLFDDYAHHPKEISAVFESLK 356

Query: 378 -TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP-----EKIR 429
            T    R++V+F     R    R +       L  ADI I+ +  P  E P         
Sbjct: 357 NTYQDKRLVVIF--QPHRYSRTRDLFDDFVYTLSSADILILLNIYPAQEKPIAHINSSTL 414

Query: 430 AEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           A  I    G   +   N  E +     ++N  D+L++ G G   +HI+
Sbjct: 415 ANAIRRSSGLNPMVIKNPKEILTVLPSIVNNNDILLILGAG--DIHIL 460


>gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
 gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
          Length = 849

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+    S DSR    G +F+A+   ++DGH +I  A+A GA  IV ++         T  
Sbjct: 26  RRFTGFSYDSRLTGVGELFLALRTPRDDGHAYITDALASGAAGIVCAT-------PPTES 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +N  +++ D+     + +A+    +    ++ VTG+ GK+S    +  +
Sbjct: 79  ANATVIIADDPALLAARWAAVRLRQVAPLVVGVTGSVGKTSTTRAIAAV 127


>gi|21674299|ref|NP_662364.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium tepidum TLS]
 gi|21647471|gb|AAM72706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium tepidum TLS]
          Length = 474

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 106/294 (36%), Gaps = 37/294 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRL 162
           L    L G+H    + V GT GK++  S V  + +  GL   F IG      +F    R 
Sbjct: 96  LVRRELIGRHTS--IVVAGTHGKTTTTSLVAWLLEAGGLLPGFLIG--GIPENFGDGCR- 150

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
               P  L++   +  ++G  + S          H    I +I     N+  DH D   +
Sbjct: 151 ----PSGLSEP-GFFVTEGDEYDSAFFDKRSKFLHYRPDIAII----NNVEFDHADIFDS 201

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                    RL   L+P     I+ ADD  S EV  +A    CRV + G  G        
Sbjct: 202 LDD-IKKSFRLLVNLVPSNGLLIVNADDPNSMEVSAKAF---CRVETFGLNGN------- 250

Query: 283 CAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            A      +    +G  F  +           PL G + V NAL A    I  G+    V
Sbjct: 251 -AEWTAADIATDTDGTSFTVVRDSEAIGRVKVPLFGNYNVMNALAATAAAIRAGVSFESV 309

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              L        R E VG  + G  +  D+AH   ++ + L  I     GR I+
Sbjct: 310 TRGLCSFKRPKRRMELVGEYAGGITLIEDFAHHPTAIRLTLGAIAEHYPGRRII 363


>gi|116670129|ref|YP_831062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter sp.
           FB24]
 gi|116610238|gb|ABK02962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter sp.
           FB24]
          Length = 528

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 32/166 (19%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+   + L +TGT+GK++     + + Q +GL +  +G             + TP    L
Sbjct: 138 GRKTADWLTITGTNGKTTTVGLTESMLQAAGLKAIAVG------------NVGTPILDAL 185

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              + Y        ++VE SS  L  H    +  +A    N+  DH+D+H +  +Y   K
Sbjct: 186 RDPVEY------DVLAVELSSFQL--HWSHSVSPVASVCLNVAEDHVDWHGSYASYLADK 237

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGY 272
            +++E        A IY  +A   E  +   NA    GCR  +VG+
Sbjct: 238 AKVYEH----TQKACIY--NAEQIETERMVENADVVEGCR--AVGF 275


>gi|302529277|ref|ZP_07281619.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302438172|gb|EFL09988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 481

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 7/183 (3%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D ++       A    F E        ++  DD +S+ V +     G RV 
Sbjct: 193 ITNIDADHLDQYEDVDTLARA-FAGFAERAGTTGFVVMPEDDPHSRWVTRYLRAKGIRVF 251

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGLCIAI 325
           + G +G    L           V  +   +D D      P+PG     NA  A    + +
Sbjct: 252 TFG-EGSPADLSIRLESELPGSVRFTARFRDDDEAAVEVPVPGSHMARNAGAALLTAVKL 310

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRI 384
           G   +  +  L +   V  RFE  G   RG R+Y DYA    S+   L  + RT   GR+
Sbjct: 311 GASRSGAVLGLAQYPGVGRRFELKG-EPRGIRVYDDYACHHTSIRASLTALRRTAMGGRL 369

Query: 385 IVV 387
           I V
Sbjct: 370 IAV 372


>gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 472

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  +S DSR I     F AI G+  DGH F+  A+ + A  +V+++     +  A+I
Sbjct: 24  EDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHAVQKSACLVVINA-----EMMASI 78

Query: 87  RS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              + P+ VV++    L+  AS    +    I+A+TG+ GK++    ++     +G
Sbjct: 79  GPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGSVGKTTAKEMLKLALSSAG 134


>gi|163741576|ref|ZP_02148967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385310|gb|EDQ09688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
          Length = 465

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 23/134 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+AVTG++GKS+  + +  I Q +G  S   G    I     D  +  P           
Sbjct: 122 IVAVTGSNGKSTTVALLHHILQEAGRESQLAG---NIGRGVLD--IDPPG---------- 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S G+  V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 167 --SGGI--VVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADD 250
             P    AII  D+
Sbjct: 221 GGPDR--AIIGVDE 232


>gi|317133419|ref|YP_004092733.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
 gi|315471398|gb|ADU28002.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
          Length = 454

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 116/325 (35%), Gaps = 58/325 (17%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVTGTSGKSSVASFVQQIC 137
           ++A +  + P +     +  L LF+      L  +H  +  AV+GT GK++  S + QI 
Sbjct: 74  YTAAVHEDNPEIQAARAKN-LPLFSRAELLGLLSRHYADTFAVSGTHGKTTTTSMLTQIL 132

Query: 138 QRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             +G       PT+ I     F   +     + + + +A  +  S    H +V       
Sbjct: 133 MMAGKD-----PTAVIGGKLPFIGGSSRIGATDLMVCEACEFQDSFLTLHPAVSV----- 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYS 253
                           N+  DH++Y ++ +      +  F     +   A+IY  DDA  
Sbjct: 183 --------------ILNIDNDHLEYFKSMENL----IEHFARFAAQTGNALIYNGDDA-- 222

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------- 303
              ++   NA    ++ G      H     A      + +      FD L          
Sbjct: 223 -NTLRAVRNASIHKITFGLD----HANDYSA----DNIGVVDRHLTFDLLRGEQTMAHIT 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   + NAL A       G+  A++ E L        RFE +G  + G  +  DYA
Sbjct: 274 LKVPGRHNILNALAACAAAAYAGVPDAVIEEGLNAFSGAGRRFEVLGRTANGTTVADDYA 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388
           H    L   L+  + +    +  VF
Sbjct: 334 HHPTELSATLRAAKDLGYAAVWAVF 358


>gi|218674669|ref|ZP_03524338.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli GR56]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+ D
Sbjct: 278 LVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GRII V
Sbjct: 337 YGHHPVEIKAVLRAAREACKGRIIAV 362


>gi|308271441|emb|CBX28049.1| UDP-N-acetylmuramate--L-alanine ligase [uncultured Desulfobacterium
           sp.]
          Length = 459

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 109/276 (39%), Gaps = 33/276 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +AV G  GK++  S V  +  + GL    +  G   +I S A                  
Sbjct: 108 IAVAGAHGKTTTTSIVASVLAKGGLDPTVVIGGKLKSIDSNA------------------ 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  QG   V+    S G        I ++    TN+ ++H+D++    A  +  +  F 
Sbjct: 150 -LLGQGNYIVAEADESDGSFLKYSPAIAVV----TNIDKEHLDFYSNIDAIKDVFLN-FI 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTIS 294
           + +P    A++  D+ Y ++++ +      R  + G   + +   K  +I     +  + 
Sbjct: 204 DRIPFYGLAVLCLDNEYVQDIIPKIKK---RFTTYGMSSQAVFQAKNVSIEGLISKFKVC 260

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G    +    LPG   VYN+L +  + + + I   ++ E LE +  V  R E  G   
Sbjct: 261 YNGNTLGEISLNLPGIHNVYNSLASIAVGMELDIPFDIIKEALENMQGVQRRLEIKG-EV 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
           RG  +  DY H    +   L+  +      R+IVVF
Sbjct: 320 RGITVVDDYGHHPTEIRTTLQAAKDCWPDRRVIVVF 355


>gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
 gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
          Length = 459

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 150/355 (42%), Gaps = 47/355 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+D+R IQ G +FV +VG   DGH ++ QA+ QGA A +  +   L    A    
Sbjct: 13  RIAGVSTDTRSIQPGQLFVPLVGENFDGHSYVAQALQQGAAAALWETKRELPQELA---- 68

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P+L V +T K L   A+    +    ++ +TG++GK++    V  +      +++++ 
Sbjct: 69  DAPLLFVRDTLKALQQLATSYREELYVRVIGITGSNGKTTTKDMVAAVLG----TAYKVH 124

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIA- 206
            T+       +N +  P        L+ L     T  +V E    G  +  L  +  IA 
Sbjct: 125 KTAG----NLNNHIGLP--------LTVLQLDEETDAAVLEMGMSGFGEIEL--LTNIAR 170

Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMKRAH 261
                 TN+G  H+    +++    AK+ +   L       ++Y  D    + E+   + 
Sbjct: 171 PDVAVITNIGDAHLLQLGSREGIAKAKLEIAHGL--HSGGILLYNGDEPLLAAELAGMSL 228

Query: 262 NAGCRVLSVG------YQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             G ++ + G      +    I +  V    A+  K Q T+S       +  P+PG+  V
Sbjct: 229 PEGTQLQTFGLGESNDWSAADIEVGAVSSAFAVKRKGQDTVSAP-----YTIPVPGQHNV 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            NAL A  +    GI    +   L  L +   R + V   +  G + ++ A+ +N
Sbjct: 284 SNALAAIAIGRRFGISEENIRNGLIGLELTGMRIQPV--KAHNGAMILNDAYNAN 336


>gi|78065117|ref|YP_367886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
 gi|77965862|gb|ABB07242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
          Length = 468

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 144/390 (36%), Gaps = 62/390 (15%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+DSR    G +FVA+ G + D H F+    A+GA A +V+   +            
Sbjct: 27  DRVSTDSRTAGPGDLFVALKGERFDAHDFLGDVAARGASAALVAHVPA--------GVTM 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P +    TR  L   A     +    ++AVTG++GK++V   +  I              
Sbjct: 79  PAIEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASIFA------------ 126

Query: 151 STISSFAQDNRLTTPS--------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG- 201
              ++   D RL T          P+ L + LS      V  + +          RL   
Sbjct: 127 ---AAVGADARLATAGNLNNDVGLPLTLLR-LSAAHRLAVIEIGMNHPGETEILARLTAP 182

Query: 202 -IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + L+     N  R+H ++  T +A       +    LP +  A+  ADDAY+   + R 
Sbjct: 183 TVALV----NNAQREHQEFMATVEAVALEHAAVIHA-LPPDGVAVFPADDAYAG--IWRV 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQ 311
              G R+L                  N  QVT  + G +     P           GE  
Sbjct: 236 AATGNRILDFALHD--------AGRQNDAQVTGRLHGGELAIDTPAGVVTVRLRALGEHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN-- 367
             NAL A    +  G+  + + + LE    V GR +       S  G   VD  + +N  
Sbjct: 288 ARNALAATAAALGAGVALSAIKQGLESFEPVKGRLQVKQAIAGSLAGATVVDDTYNANPD 347

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           S+   +  +    + R++V+   G   D+G
Sbjct: 348 SMRAAIDVLAAQPAPRVLVIGDMGEVGDEG 377


>gi|325293464|ref|YP_004279328.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
 gi|325061317|gb|ADY65008.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D + P+PG   V NA  A  +   +GI  A + + L     V  RF   G  + G +++ 
Sbjct: 277 DLVLPMPGRHNVSNATAAIAVANRLGISEADIKKGLASFAGVKRRFTLTG-EANGVQVFD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    ++ +L   R    GRI+ V
Sbjct: 336 DYGHHPVEIKAVLAAAREACKGRIVAV 362


>gi|218886060|ref|YP_002435381.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226711908|sp|B8DP81|MURD_DESVM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218757014|gb|ACL07913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 445

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E +LAVTGTSGK++  S    + +  GLS F  G           N  T  S   L+ A 
Sbjct: 119 EPVLAVTGTSGKTTTVSLCAAMLRAQGLSVFLGG-----------NIGTPLSEYVLSVAH 167

Query: 175 SYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                QG   V V E SS  L        +       N+  +H+DYH     Y +AK RL
Sbjct: 168 GGADGQGRADVLVIEISSFQLQA--CTTFRPRVAMLLNISENHLDYHADMAEYIDAKFRL 225

Query: 234 F 234
           F
Sbjct: 226 F 226


>gi|229031544|ref|ZP_04187544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
 gi|228729833|gb|EEL80813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 28/210 (13%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           A   +VM   A++ G +VL    +    G  I    +C    K      VE  D      
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKENALCFKGEK-----VVEVGD----IV 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAH 364
           LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  ++Y D   
Sbjct: 275 LPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KVYND--- 329

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            S +  M+          + IV+   G DR
Sbjct: 330 -SKATNMLATEKALAAFTQPIVLLAGGLDR 358


>gi|298386757|ref|ZP_06996312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
 gi|298260431|gb|EFI03300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 156/365 (42%), Gaps = 38/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G +F+A+ G   +G+ F  +A+  G A A++  S Y+       I  +  
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYA-------IEGDQR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+  + L   A+    +    ++ +TGT+GK++    +  +  +S    + +G   
Sbjct: 69  YILVDDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  PS +   KA        +  + + A+  G  +   + ++   G  TN
Sbjct: 128 -------NNHIGVPSTLLRLKA-----EHDLAVIEMGANHPGEIKFLSEIVEPDCGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L  KE S   I+ D+AY   + +     G  ++  
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKEGSTVFIHHDNAYLMNIAE-----GLNLIPY 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           G +       ++    N   +T       +GK +     L GE+   NAL A  +    G
Sbjct: 231 GTEDDLYVNGRITG--NSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFG 288

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384
           ++ A + E L        R +   T+     + +D A+ +N   M+  L+N R +     
Sbjct: 289 VEDAKINEALAGYTPQNNRSQLKKTDDN--TLIID-AYNANPTSMMAALQNFRNMEVPHK 345

Query: 385 IVVFG 389
           +++ G
Sbjct: 346 MLILG 350


>gi|258620874|ref|ZP_05715908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM573]
 gi|258586262|gb|EEW10977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM573]
          Length = 440

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 57/258 (22%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDKPVIAITGSNGKSTVTDLSGVLANAAGVKT------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S +   +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 147 ------ALDLISPEVELYV-LELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 198 RQAKLRIFDH----AETAVVNADDVQTFP----DHAAHLQVVTFG-------------VE 236

Query: 287 NKQQVTISVEGKDFDFLFP------------LPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              Q +++ E +  ++LF             L G   V N L    L  + G++  L L+
Sbjct: 237 QPAQFSVA-EHQGHEYLFARDNAVLASSELSLVGRHNVANVLTVLALLDSAGVNVRLALD 295

Query: 335 HLEKLHVVPGRFEFVGTN 352
            L+    +  R + V  N
Sbjct: 296 ALKSYTGLTHRCQVVADN 313


>gi|291457563|ref|ZP_06596953.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
 gi|291380616|gb|EFE88134.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
          Length = 481

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 102/275 (37%), Gaps = 45/275 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAK 172
           P   + +TGT+GK+S      ++    GL +   G   S   S +     T P    L  
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPKHDVLC- 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L  H  D ++L   + TN+  DH+D+H  ++ Y   K +
Sbjct: 159 --------------VELSSFQL--HFTDSLELDCAAITNIADDHLDWHGGRENYAADKSK 202

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVLSVGY-------------QGKFI 277
           +F          I Y A DA   E+ + A   AGCR   VG+              G  +
Sbjct: 203 VFR----AARRVIAYNAQDAKVSELAQAAPVAAGCR--KVGFTLNEPEAGQIGIADGWIV 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLE 334
               V      + + ++    DF  L    G      V +AL A  L + +G D    LE
Sbjct: 257 DRSGVAGGKVGEPIKLAAIA-DFTHLMEPDGSLYPHLVADALTALVLVLGLGADRETALE 315

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSN 367
            L+       R E V      G +  +VD +  +N
Sbjct: 316 ALQTFKPGGHRIETVAEARVNGGVIRFVDDSKATN 350


>gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 455

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 13/124 (10%)

Query: 22  PMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           P+Q R    +     V +DSR I    +FVA+VG   DG+ ++      GA A +VS + 
Sbjct: 13  PLQGRITGEDVCFTNVFTDSRQIAKNGLFVALVGENFDGNDYVEAVAENGAVAALVSRSS 72

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S         S  P L V++T+  L    +     +   ++A+TG+SGK++  + +  + 
Sbjct: 73  S---------SALPQLCVEDTQTALGRLGAFNRDLYTGPLVAITGSSGKTTAKNLINGVL 123

Query: 138 QRSG 141
            + G
Sbjct: 124 SQRG 127


>gi|328472000|gb|EGF42877.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           10329]
          Length = 485

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 115/287 (40%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   ++DDA  +  ++  H         G QGKF  ++K  A 
Sbjct: 234 IDDPVIRELIPRISRQVITYGFSDDADVR--IENYHQE-------GQQGKFTVVRKGRA- 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        + D    +PG     NA  A  +     I+   +L+ +        R
Sbjct: 284 -------------NLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRR 330

Query: 346 FEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G     +  DY H    +++ +   R+     R++++F
Sbjct: 331 FDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIF 377


>gi|255009968|ref|ZP_05282094.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147761|ref|ZP_07809954.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136528|gb|EFR53888.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 157/365 (43%), Gaps = 38/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G +F+A+ G   +G+ F  QA+  G A A+V  + Y+ +D       N  
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAAQALKDGCAYAVVDEAEYAPED-------NKH 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I++VDN  + L   A+    +    ++ +TGT+GK++    +  +  ++    +  G   
Sbjct: 69  IILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLAKAHNVLYTEGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +   KA        +  + + A+  G  +  +   +   G  TN
Sbjct: 128 -------NNHIGVPMTLLRLKA-----EHDLAVIEMGANHPGEIKFLVHIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L  K +S   I+ D+ Y  ++ +     G  ++  
Sbjct: 176 VGKAHLEGFGSFEGVIRTKGELYDYLREKDDSTVFIHHDNVYLMDIAR-----GLNLIPY 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326
           G +        V    N   +T   + GKD +       L GE+   NAL A  +    G
Sbjct: 231 GSENSLYVNGHVTG--NSPYLTFEWKAGKDGNLHQVQTQLIGEYNFPNALAAVTIGRFFG 288

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384
           ++S+ + E L        R +   T      + +D A+ +N   M+  L+N R +T  R 
Sbjct: 289 VESSKIDEALAGYTPRNNRSQLKKTADN--TLIID-AYNANPTSMMAALQNFRNMTVERK 345

Query: 385 IVVFG 389
           +++ G
Sbjct: 346 MLILG 350


>gi|190892582|ref|YP_001979124.1| UDP-N-acetylmuramate--alanine ligase [Rhizobium etli CIAT 652]
 gi|190697861|gb|ACE91946.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+ D
Sbjct: 278 LVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GRII V
Sbjct: 337 YGHHPVEIKAVLRAAREACKGRIIAV 362


>gi|169833765|ref|YP_001695051.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996267|gb|ACA36879.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
          Length = 457

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI +A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFIERAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       +N P ++VD+        ++    K   ++ AVTG++GK++    +  
Sbjct: 70  KKV---------ANHPYILVDDVLTAFQTLSAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|262373760|ref|ZP_06067038.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter junii SH205]
 gi|262311513|gb|EEY92599.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter junii SH205]
          Length = 481

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 187 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAVVCGDDANIREILPRV- 245

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVA 318
             G  VL+ G+  +   ++ V    +  +   +V  KD + L      PG   V NAL A
Sbjct: 246 --GRPVLTYGFN-EDNDVRAVDVEQDGMRSHFTVLRKDREPLRVTINQPGLHNVLNALAA 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKN 375
            G+    G+    +   LE    V  RF+  G    G    ++  DY H    +E  +K 
Sbjct: 303 IGVATDEGVSDGAICRALEGFSGVGRRFQVQGEFEVGEGTVKLVDDYGHHPKEVEATIKA 362

Query: 376 IRTITSGRIIVVF 388
            R     R +V+ 
Sbjct: 363 ARASHPDRRLVMM 375


>gi|229092960|ref|ZP_04224092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
 gi|228690414|gb|EEL44199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V+         LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|149914528|ref|ZP_01903058.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
 gi|149811321|gb|EDM71156.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
          Length = 477

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D+  T++   +     F   +P    A+   DD   + ++ +  +   RV++
Sbjct: 196 TNIDPEHMDHWGTEE-NLHRGFYEFVSNIPFYGLAVCCTDDPDVQALVAKLTDR--RVVT 252

Query: 270 VGYQGKFIHLKKVCAIHNKQ----QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIA 324
            G+  +   ++ V   + K      V +  EG   +    P+PG+  V NAL A  +   
Sbjct: 253 YGFNTQ-ADIRAVNLRYEKGVAHFDVALQAEGTMIEGCTLPMPGDHNVSNALSAVAVARH 311

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+  + + E L     V  RF  VG    G  I  DY H    +  +LK  R    GR+
Sbjct: 312 LGMKRSEIREALAAFGGVNRRFTKVG-EVNGVTIIDDYGHHPTEIAAVLKAARQACDGRV 370

Query: 385 IVV 387
           I V
Sbjct: 371 IAV 373


>gi|238918676|ref|YP_002932190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Edwardsiella
           ictaluri 93-146]
 gi|238868244|gb|ACR67955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Edwardsiella ictaluri 93-146]
          Length = 438

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 49/293 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++   +G   +Q+G    I                   ALS 
Sbjct: 107 IVAITGSNGKSTVTTLVGEMACAAG---WQVGVGGNIG----------------VPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++  A +  N+  DH++ Y    Q Y  AK+R++E
Sbjct: 148 LKHECRLYV-LELSSFQLET--TASLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +    H A  R +S G      HL       N+QQ  I +
Sbjct: 205 ----NARACVVNADDALTMPI----HGADTRCVSFGVDVGDYHL-------NRQQGEIWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +    L      L G     NAL A  L  A+G+  A  L  L     +  RF+ V  
Sbjct: 250 RVRGEKILNTKEMQLTGIHNYTNALAALALADAVGLPRASSLRALTTFRGLAHRFQLVLE 309

Query: 352 NSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           +S  G  +++ +  +N  S E  LK +    +G + ++ G G  +D    P++
Sbjct: 310 HS--GVRWINDSKATNVGSTEAALKGLH--LNGTLHLLLG-GDGKDADFTPLL 357


>gi|238752430|ref|ZP_04613907.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
           ATCC 43380]
 gi|238709363|gb|EEQ01604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
           ATCC 43380]
          Length = 442

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 99/238 (41%), Gaps = 42/238 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ + +G   +Q+G    I                   ALS 
Sbjct: 111 LVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIG----------------VPALSL 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +    V +E SS  L+      ++  A +  N+  DH D Y    Q Y  AK+R++E
Sbjct: 152 LQQEN-QLVVLELSSFQLETT--SSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYE 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL       NKQQ  I +
Sbjct: 209 ----NAKVCVVNADDALTMPI----RGADSRCISFGVDVGDYHL-------NKQQGEIWL 253

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +    L      L G     NAL A  L  A+GI  +  L  L     +P RF+ V
Sbjct: 254 RVRGEKVLNTREMKLTGRHNYTNALAALALADAVGIPRSSSLTALTTFTGLPHRFQLV 311


>gi|27381712|ref|NP_773241.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium japonicum
           USDA 110]
 gi|44888203|sp|Q89FU8|MURC_BRAJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27354881|dbj|BAC51866.1| UDP-N-acetylmuramate-alanine ligase [Bradyrhizobium japonicum USDA
           110]
          Length = 467

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 130/332 (39%), Gaps = 44/332 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
            GAE +VVS+A         I+ + P L+    R+   +  + +  +    ++ +A+ GT
Sbjct: 65  DGAEVVVVSTA---------IKRDNPELMAARERRIPVVRRAEMLAELMRLKSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  +    GL    I     I+++  + RL                  G  
Sbjct: 116 HGKTTTTTMVATLLDAGGLDPTVIN-GGIINAYGSNARL----------------GAGDW 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V     S G        + ++    TN+  +H+D+ +T +A  +A  R F E LP    
Sbjct: 159 MVVEADESDGTFLKLPTDVAIV----TNVDPEHLDHFKTFEAVQDA-FRHFVENLPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-- 300
           A++  D    + ++ +  +   R+++ G   +  + L  +  +    +  ++   +    
Sbjct: 214 AVMCIDHPVVQSLVGKIEDR--RIITYGENPQADVRLVDLTPMGGGSKFKVAFRDRKTGA 271

Query: 301 -----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D + P+PG     NA  A  +   +G+    +   +     V  RF   G    G
Sbjct: 272 VHEIPDLMLPMPGRHNASNATAAIAVARELGVSDEAIRSAIAGFGGVKRRFTKTG-EWNG 330

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             +  DY H    +  +LK  R  T+G+I+ V
Sbjct: 331 VTVIDDYGHHPVEIAAVLKAARESTNGKIVAV 362


>gi|229588491|ref|YP_002870610.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
 gi|259509778|sp|C3KCT1|MURC_PSEFS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229360357|emb|CAY47214.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
          Length = 481

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 136/349 (38%), Gaps = 80/349 (22%)

Query: 57  HLFIPQAIAQGAEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            +FI       AEA  +VVSSA +  +          I VV        L   R      
Sbjct: 63  QIFIGHRAENAAEADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR------ 116

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            + +AV GT GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A
Sbjct: 117 -HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEA 172

Query: 174 ----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S+L  Q +  V                        TN+  DH+    T    FN 
Sbjct: 173 DESDASFLHLQPLVAV-----------------------VTNIDADHM---ATYDGDFNK 206

Query: 230 KMRLFEEL---LPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSV---GYQ 273
             + F E    LP    A++  DD   +E++ +          + +A  R ++V   G Q
Sbjct: 207 LKKTFVEFLHNLPFYGLAVVCLDDPVVREILPQVKRPTVTYGFSEDADVRAINVRQEGMQ 266

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSAL 331
             F  L+      +++ + +SV          +PG   V N+L  A +CIA   G+    
Sbjct: 267 TYFTVLRP-----DREPLDVSVN---------MPGNHNVLNSL--ATICIATDEGVSDEA 310

Query: 332 VLEHLEKLHVVPGRFEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR 377
           ++E L +   V  RF+  G     GG + +  DY H    +  ++K +R
Sbjct: 311 IVEGLSRFAGVGRRFQVYGQLPVEGGDVMLVDDYGHHPTEVAAVIKAVR 359


>gi|228945809|ref|ZP_04108155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228813874|gb|EEM60149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 252

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 7/108 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA A +   +Y       +   
Sbjct: 32  EIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGAIASLWKKSY------GSPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             PI+ VD+T   L   A     +    ++ +TG++GK++V   ++ I
Sbjct: 85  GIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGI 132


>gi|225864166|ref|YP_002749544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
 gi|225786057|gb|ACO26274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
          Length = 255

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++I+ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 32  EIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGAVASLWKKSY------GTPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             PI+ VD+T   L   A     +    ++ +TG++GK++V
Sbjct: 85  GVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125


>gi|326564537|gb|EGE14763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 46P47B1]
 gi|326565722|gb|EGE15885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 12P80B1]
 gi|326574566|gb|EGE24506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis O35E]
 gi|326576146|gb|EGE26061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis CO72]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPENILAVTGTSGK 126
           A+ I++S   + +  S        I V+ + + F+    +R L       I+A+TG++ K
Sbjct: 62  ADQIIISPGINPRTPSIVAAKAQGIPVISDVQLFIDTLKARDLTQATNTPIIAITGSNAK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V + V ++ + +G+    +G    I          TP       AL  L+ Q +  V 
Sbjct: 122 STVTTLVGEMAKHAGMI---VGVGGNIG---------TP-------ALELLTIQNMDLVV 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE        AII
Sbjct: 163 LELSSFQLEH--ISNLAAQGATILNLSADHLDRHDGMVDYLAQKLRIFENC----QTAII 216

Query: 247 YADDA 251
             DDA
Sbjct: 217 CQDDA 221


>gi|167627721|ref|YP_001678221.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597722|gb|ABZ87720.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 561

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 121/303 (39%), Gaps = 44/303 (14%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTVRLTDYICRTAGKLT---GYTSTDWVKVNDELIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKAIVFRT- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHN------ 287
           + K+S A+I  D+ Y K+   +   A   V     Q     +L K    C + N      
Sbjct: 293 MGKDSHAVINLDNFYMKQQFDKLSCAKIIVTQDPDQHDMDYYLSKADYACVVENGIFTWI 352

Query: 288 ----KQQVTISVEGKDFDFLFPLP----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               K+Q+   V+        PL      +  + NA++A  L   +GID   + + L   
Sbjct: 353 DKKSKKQILPVVDA-------PLTVKGFAKHNIENAMIAIALSFKLGIDFDYIEKALGSY 405

Query: 340 HVVP----GR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG 391
              P    GR   FEF    +      +DYAH    +E +L  I+     G+  ++ G  
Sbjct: 406 KNDPKVNRGRANIFEFDNKVA-----VLDYAHNEAGMEALLNMIKAYDKGGKKYLMIGTT 460

Query: 392 GDR 394
           GDR
Sbjct: 461 GDR 463


>gi|158522796|ref|YP_001530666.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
 gi|229486488|sp|A8ZXW2|MURC_DESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158511622|gb|ABW68589.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
          Length = 457

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 115/280 (41%), Gaps = 37/280 (13%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+ R+H+D++    A   + +  F + +P    A++  D+   + ++        R ++
Sbjct: 179 TNIDREHLDFYPDLAAISKSFLE-FLDRIPFYGVAVVCLDNEPLQALVPLIKK---RFIT 234

Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGI 327
            G   +  +  + +  I+ K + ++    ++   +   +PG   V NAL A  + + +G+
Sbjct: 235 YGTSNQADLQARHITPINGKVRFSVVWRQEELGTIDLGVPGFHNVRNALAAVAVGLELGL 294

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRT-ITSGRII 385
             A++ E LE +  V  R E  G    GG I V DY H    ++  L+ +R      R++
Sbjct: 295 AFAVIKEALETMAGVQRRLEKKGET--GGVIVVDDYGHHPTEIKATLQGVRQHWEDRRVV 352

Query: 386 VVFGCGGDRDQGKRPIMGKIALD-------LADIAIVTDDNPRSEDP----------EKI 428
           VVF       Q  R    K   D         D  +V       E P          E I
Sbjct: 353 VVF-------QPHRYSRTKALFDDFTRAFYQCDELVVLPIYAAGEHPIDGVDGESVAEGI 405

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           RA   HG  G      R EA+    E+L K D+L+  G G
Sbjct: 406 RA---HGHKGVRYVEGRAEAVAYLKEILQKGDILLTLGAG 442


>gi|115375946|ref|ZP_01463194.1| folylpolyglutamate synthase [Stigmatella aurantiaca DW4/3-1]
 gi|115367029|gb|EAU66016.1| folylpolyglutamate synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPI 401
           PGR E +G       + +D AH    ++++L ++  +  GR +  VFG   D+D+G  P+
Sbjct: 267 PGRLEELGCQPP---VLLDGAHNPAGMKVLLASLEALYPGRALHAVFGVVADKDRG--PM 321

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           M  +    A + +   D PRS  PE+   E
Sbjct: 322 MQGLFPRCASVHLTPLDTPRSLPPERYLPE 351


>gi|114798168|ref|YP_761703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hyphomonas
           neptunium ATCC 15444]
 gi|114738342|gb|ABI76467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 33/257 (12%)

Query: 102 LSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           + LFA R     PE     ++AVTGT+GKS+  + +  I +++G  + ++G    I +  
Sbjct: 100 MELFA-RAVQALPERARPKVVAVTGTNGKSTTTALIGHILKQAGRDA-RVG--GNIGTGV 155

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            D      + IY+                +E SS+ LD   +  +      F NL  DH+
Sbjct: 156 LDLAALHSNAIYV----------------LELSSYQLD--LVKSLHCDVSVFMNLSPDHL 197

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           D H     Y  AKMR+F+    K   A+I  DD Y++ +       G + + V     + 
Sbjct: 198 DRHGGMDGYQAAKMRIFQNQTDKNV-AVIGFDDIYTQSIAIGLSAKGPQKV-VQISSTYT 255

Query: 278 HLKKVCAI----HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             K + A+    ++ Q       GK  D    L G     NA  A   C A+G+D A ++
Sbjct: 256 LGKGISAVDGRLYDNQSGKAEFVGK-LDECPALIGRHNHQNAAAAYAACRALGLDPATIM 314

Query: 334 EHLEKLHVVPGRFEFVG 350
             L     +  R E VG
Sbjct: 315 AGLRTFPGLAHRMEAVG 331


>gi|313837461|gb|EFS75175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA2]
 gi|314929329|gb|EFS93160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL044PA1]
 gi|314971668|gb|EFT15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA3]
 gi|328906993|gb|EGG26759.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium sp.
           P08]
          Length = 485

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 27/160 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +  G +++A+ G + DGH F   A   GA A++ + +   Q          P L+V
Sbjct: 31  DTRKVTPGALYIALPGARVDGHDFTQAAQDAGAAAVLTTRSTDAQ---------VPHLIV 81

Query: 96  DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
           D+ R  LS  A  +     E     +A+TG+SGK+S    + QI     L +F  GPT +
Sbjct: 82  DDGRAGLSRLARHVVATERERGMLTIALTGSSGKTSTKDMLAQI-----LETF--GPTVA 134

Query: 152 TISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVS 186
            + SF  +N +  P     +       +S + ++G+ H+S
Sbjct: 135 PVGSF--NNEIGAPLTACRSNEDTSFLVSEMGARGLGHIS 172


>gi|322369877|ref|ZP_08044439.1| dihydropteroate synthase [Haladaptatus paucihalophilus DX253]
 gi|320550213|gb|EFW91865.1| dihydropteroate synthase [Haladaptatus paucihalophilus DX253]
          Length = 816

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 117/316 (37%), Gaps = 60/316 (18%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLS-------------------------SFQIGPTSTIS 154
           V G++GK S A   +Q+ + +GLS                         +  +     +S
Sbjct: 44  VAGSNGKGSTARMTEQVLREAGLSVGLYTSPHFDDVRERITVDGRKITEAAMVEYVEAVS 103

Query: 155 SFAQDNRLTTPSPIYL----AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AG 207
            +  +      SP +     A AL Y   + V    +E    G    R D   ++   A 
Sbjct: 104 EYVTERATHGNSPTFFEGMTALALWYFGREDVDVAVLEVGIGG----RYDATSVVDPVAS 159

Query: 208 SFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-----VMKRAH 261
           + T++  +H     +T +     K  +  E  P  + A   A DA  K+     V+    
Sbjct: 160 AVTSVTLEHTGIIGETVEEIATDKAHVAPEDAPLVTGATGDALDAVRKQAGDVLVVGDGE 219

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFPLPGEFQVYNALVAA 319
           ++  R     Y+G+           N  +  IS+ G D++     PL GE+Q  NA +AA
Sbjct: 220 DSDVRAT---YEGRT----------NHTEAAISLSGPDWNLETSIPLLGEYQAQNAGIAA 266

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L   +   +   L    +    PGRFE +GT+     + +D AH   +   +   I   
Sbjct: 267 VLARQVADVTDTELARGLRKGFWPGRFEVMGTDP---LVALDGAHNPGACAALADTIAEF 323

Query: 380 TSGRIIVVFGCGGDRD 395
               +  VFG   D+D
Sbjct: 324 DYDDLHFVFGAMHDKD 339


>gi|310820716|ref|YP_003953074.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309393788|gb|ADO71247.1| Tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPI 401
           PGR E +G       + +D AH    ++++L ++  +  GR +  VFG   D+D+G  P+
Sbjct: 295 PGRLEELGCQPP---VLLDGAHNPAGMKVLLASLEALYPGRALHAVFGVVADKDRG--PM 349

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           M  +    A + +   D PRS  PE+   E
Sbjct: 350 MQGLFPRCASVHLTPLDTPRSLPPERYLPE 379


>gi|291523761|emb|CBK89348.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale DSM
           17629]
          Length = 459

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 125/331 (37%), Gaps = 38/331 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGT 123
           G  A  ++S   L  ++A I  + P            L  + L G+  +N    +AV GT
Sbjct: 60  GQSADNITSGIDLVVYTAAIHESNPEFAAAKAAGIPMLTRAELLGQIMDNYDYSIAVAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GK++  S + +I     L + Q  PT ++    S    N     S  ++++A  Y +S 
Sbjct: 120 HGKTTTTSMISEI-----LLAAQTDPTISVGGILSSIHGNLRVGDSEYFISEACEYTNSF 174

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                        L+      I L      N+  +H+D+ +      ++        L  
Sbjct: 175 -------------LNFRPRYSIIL------NIEAEHLDFFKDINDIRHSFREYASNTLAG 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD- 299
            +  I    D+Y + V         ++++ G+  K+    +     +K   + +   +  
Sbjct: 216 GATIINGEIDSYEEIVAGLPQ----KIITYGFDSKYDFYPENITYDDKACASFTAMRQGS 271

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             FD    +PG   V NAL A  L   +G+D   +L  L+K      RF++ G    G  
Sbjct: 272 PLFDVKLSVPGAHNVSNALAAIALSTTLGLDEESILTGLDKFGGADRRFQYKG-KVNGVT 330

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           I  DYAH    +   L   +     R+++ F
Sbjct: 331 IIDDYAHHPTEIRATLTAAQKYPHDRLVLCF 361


>gi|239813922|ref|YP_002942832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
 gi|239800499|gb|ACS17566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 148/370 (40%), Gaps = 30/370 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +D+R +  G +FVA+ G + D + F+  A A+GA A +          +      
Sbjct: 25  IARVHTDTRTLAEGDLFVALKGERFDANEFLADAKARGAVAAIAHGGLEAAGLAG----- 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              L V ++   L    +    +    ++AVTG++GK++V   +  +     L +F+ G 
Sbjct: 80  ---LEVPDSLAALGALGAGWRAQFDLPLIAVTGSNGKTTVTQMIAAV-----LVAFR-GD 130

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGI-KLIAG 207
            +  ++   +N +  P  +   +A          H  VE   +H  +  RL  I +    
Sbjct: 131 RALATAGNFNNEIGVPLTLLRLRAKH-------QHAVVELGMNHPGEIARLAAIARPTVA 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-R 266
              N  R+H+++  T +A       +F   +P++  A+    D ++      AH+    R
Sbjct: 184 LVNNAQREHLEFMATVEAVALENGAVF-SFVPEDGTAVFPHGDEFAPLWNDMAHDGATRR 242

Query: 267 VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            ++ G ++   I L          QV I     DFD    + G   V NAL A    +A 
Sbjct: 243 CMTFGEHEDADISLVAAEWQQGAWQVRIRTPLGDFDAQLHIAGRHNVVNALAATACALAT 302

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN--SLEMILKNIRTITS 381
           GI    +   L     V GR +       GG     VD ++ +N  S+   +  +  +  
Sbjct: 303 GIPPETIARGLSAFEPVKGRSKASAVLLPGGHSLTLVDDSYNANPDSVRAAIDVLAALPG 362

Query: 382 GRIIVVFGCG 391
            R++V+   G
Sbjct: 363 PRLLVLGDMG 372


>gi|30263914|ref|NP_846291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Ames]
 gi|47529344|ref|YP_020693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186762|ref|YP_030014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Sterne]
 gi|52141576|ref|YP_085253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus E33L]
 gi|167636572|ref|ZP_02394866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|167641133|ref|ZP_02399388.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|170688845|ref|ZP_02880048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|170709237|ref|ZP_02899658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|177655544|ref|ZP_02936954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190565997|ref|ZP_03018916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218905043|ref|YP_002452877.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228916550|ref|ZP_04080116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928961|ref|ZP_04091993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229604216|ref|YP_002868148.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
 gi|254721447|ref|ZP_05183236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. A1055]
 gi|254735953|ref|ZP_05193659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743848|ref|ZP_05201531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Kruger B]
 gi|254756744|ref|ZP_05208773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Australia 94]
 gi|60389927|sp|Q636B4|MURD_BACCZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390084|sp|Q81WC9|MURD_BACAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711879|sp|B7JK00|MURD_BACC0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766035|sp|C3P682|MURD_BACAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30258558|gb|AAP27777.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. Ames]
 gi|47504492|gb|AAT33168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180689|gb|AAT56065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. Sterne]
 gi|51975045|gb|AAU16595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           E33L]
 gi|167510913|gb|EDR86304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|167527995|gb|EDR90801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|170125844|gb|EDS94750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|170667200|gb|EDT17960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|172080073|gb|EDT65170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190562916|gb|EDV16882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218537488|gb|ACK89886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228830768|gb|EEM76373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843129|gb|EEM88211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268624|gb|ACQ50261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V+         LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|329848047|ref|ZP_08263075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
 gi|328843110|gb|EGF92679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
          Length = 475

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 25/161 (15%)

Query: 102 LSLFA---SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           + LFA   +R   ++    +A+TGT+GKS+  + +  I + +G  +  +G    I     
Sbjct: 100 IELFARTLARFPARNRPKTVAITGTNGKSTTTALIGHILKSAG-KNVHVGGNIGIGVLDL 158

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D     P  +Y+                +E SS+ LD       K       NL  DH+D
Sbjct: 159 DE--MQPGAVYV----------------IETSSYQLDLSLT--FKPDVSILMNLSPDHLD 198

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            H     Y  AK R+F     K   A+I ADD Y+ +++ +
Sbjct: 199 RHGGMDGYIAAKKRIFMN-QEKGQTAVIGADDDYTADLISQ 238


>gi|126662328|ref|ZP_01733327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
 gi|126625707|gb|EAZ96396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
          Length = 428

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 143/370 (38%), Gaps = 56/370 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I+   +FVA+ G+  D + F  +A+ +GA+ +V+ ++     F    R+   +
Sbjct: 17  VSTDTRKIEKNSLFVALKGDNFDANTFSKEALEKGAKYVVIDNS----KFYIDERT---L 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRS-------GLSS 144
           LV D+      L  ++ + KH    I+ +TG++GK++    +  +  +        G  +
Sbjct: 70  LVEDSLIALQEL--AKFHRKHLGLTIIGLTGSNGKTTTKELIHAVLLKKYNTLATIGNLN 127

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG   T+  F +D  +              +   G  H           Q  ++ +  
Sbjct: 128 NHIGVPLTLLRFTKDTEIG-------------IVEMGANH-----------QKEIEFLCE 163

Query: 205 IA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           IA    G  TN G+ H++     +     K  L+  +        I ADD   KE   ++
Sbjct: 164 IAQPDFGYITNFGKAHLEGFGGVEGVIKGKSELYNYIKNNNKTVFINADDPLQKE---KS 220

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +N      S       + + KV A      V IS   +  +    L G +   N   A  
Sbjct: 221 NNLTTYSFSTNETEADVTISKVVA---NPMVQISFNDETIN--SHLIGIYNANNINAAIT 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           +     I   L+ E +E       R + +  N  G +I +D Y    +S++  + N   +
Sbjct: 276 IGHYFKISDKLIKEAIENYIPENNRSQLIEKN--GNKIILDAYNANPSSMQAAITNFIQL 333

Query: 380 TSGRIIVVFG 389
                I + G
Sbjct: 334 EDNSKIAILG 343


>gi|75675242|ref|YP_317663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           winogradskyi Nb-255]
 gi|118595669|sp|Q3STT0|MURD_NITWN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|74420112|gb|ABA04311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           winogradskyi Nb-255]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 26/163 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT--STISSFAQDNRLTTPSPIYLAKALS 175
           +A+TGT+GKS+  + V  + + +G    Q+G    + I S     R              
Sbjct: 117 IAITGTNGKSTTTALVAHLMREAGYD-VQMGGNIGTAILSLEPPRR-------------- 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G  HV +E SS+ +D      +    G   NL  DH+D H T + Y   K RL  
Sbjct: 162 -----GRVHV-IEMSSYQIDL--APSLDPTVGILLNLSPDHLDRHGTIEHYAQVKERLIA 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
            + P+ + A++  DD +   +  R   AG  V+ V  +    H
Sbjct: 214 GVQPQGT-AVVGVDDHWCAAIADRQEQAGRSVVRVSVKRPLAH 255


>gi|302554927|ref|ZP_07307269.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472545|gb|EFL35638.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 463

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 12/214 (5%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGK 275
           H    A  +     FE  + + +P    +I AD   ++E+ +R      RV++ G  Q  
Sbjct: 190 HHANYASMDEIYESFETFVDRVTPGGTLVISADHEGARELTRRVAGRDVRVVTYGESQDA 249

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            + +  V     K +VT+ ++G++  F   +PG    +NA+ A    +A+GI +  +   
Sbjct: 250 GVRVLSVVPQGLKSEVTVVLDGEELTFTVSVPGRHYAHNAVAALAAGVALGIPAEELAPA 309

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGC---G 391
           L     V  R +  G  + G ++   YAH    +   L+ +R      RI+VVF      
Sbjct: 310 LAAYTGVKRRLQLKG-EAAGVQVIDSYAHHPTEMTADLEAMRAAAGDSRILVVFQPHLFS 368

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             ++ GK   MG+ AL LAD ++V D  P  EDP
Sbjct: 369 RTQELGKE--MGQ-ALSLADASVVLDIYPAREDP 399


>gi|229196428|ref|ZP_04323175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228587065|gb|EEK45136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 300

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   E+I+   ++   +   +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA
Sbjct: 13  KKLEEVIDGEGLYE-SFHHLEIHGVCIDSKNMKEGNLFVPIIRVK-DGHEYVKEAMDNGA 70

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +   +Y       T     PI+ VD+T   L   A     +    ++ +TG++GK++
Sbjct: 71  VASLWKKSY------GTPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTT 124

Query: 129 VASFVQQICQRS 140
           V   +  I   +
Sbjct: 125 VKDIIGSILSST 136


>gi|157377044|ref|YP_001475644.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
 gi|157319418|gb|ABV38516.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
          Length = 487

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 114/291 (39%), Gaps = 43/291 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK+S +S +  I +  G    F IG      +F    RL   SP ++ +A  
Sbjct: 128 VLAVSGTHGKTSTSSMLAWILEECGYEPGFLIG--GVPQNFGVSARLGN-SPFFVVEADE 184

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH---QTQQAYFNAKMR 232
           Y S+        + S     Q R     L+     NL  DH D     +  Q  FN  +R
Sbjct: 185 YDSA-----FFDKRSKFVHYQPR----TLV---INNLEFDHADIFDDLKAIQRQFNHVIR 232

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-- 290
                +P +   II+  D+   E +++    GC      Y        K        Q  
Sbjct: 233 T----VPGQG-KIIWPKDS---EAVQQVIEMGCWSEQETYTKSQSRGPKAIEQQAPAQGW 284

Query: 291 --VTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
               I+ +G  F+  F           L G+  V NA +A    + +G+   + +E L K
Sbjct: 285 STQLIADDGHKFELFFNGDSQGILDWSLIGQHNVENATMAIAAALHVGVQPEVAIEALTK 344

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                 R E +GT   G  +Y D+AH   ++   L+  R  +  G+I ++ 
Sbjct: 345 FSPPKRRMELIGT-VNGIEVYDDFAHHPTAIATTLQGTRAKVGEGKITIIL 394


>gi|120609516|ref|YP_969194.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
 gi|166222947|sp|A1TKD2|MURC_ACIAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120587980|gb|ABM31420.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
          Length = 475

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 140/338 (41%), Gaps = 54/338 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA+A+V S+A         ++S+ P ++    RK   +  + +  +    +  +A+ GT
Sbjct: 63  EGADAVVTSTA---------VQSDNPEVIAARERKIPVVPRALMLAELMRLKRGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +   +GL  +F IG    ++S   + +L                 QG 
Sbjct: 114 HGKTTTTSLVTSVLAEAGLDPTFVIG--GRLNSAGANAKL----------------GQG- 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++ VEA     D   L+ + ++A   TN+  DH++ +        +    F   +P   
Sbjct: 155 EYIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFGRLKSAFVDFLHRMPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-----IHNKQQVTI 293
            AI+  D+   +E++    +  C V S G+    Q + + ++         +  +  VT+
Sbjct: 212 TAILCTDNPAIREILP---DVTCPVTSYGFSEDAQVRAVDVRADAGRMRFRVQRRNGVTL 268

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-N 352
                D D +  L GE  V NAL A  + + + I    +L  L +   V  RF+  G   
Sbjct: 269 ----PDLDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYGELP 324

Query: 353 SRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
           ++GG  +    DY H    +   L   R    GR +V+
Sbjct: 325 AQGGGTFTLIEDYGHHPVEMTATLAAARGAFPGRRLVL 362


>gi|49479386|ref|YP_037974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118479132|ref|YP_896283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196035806|ref|ZP_03103208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196038844|ref|ZP_03106152.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225865894|ref|YP_002751272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228935228|ref|ZP_04098054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947632|ref|ZP_04109922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123426|ref|ZP_04252630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|301055403|ref|YP_003793614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           anthracis CI]
 gi|60390446|sp|Q6HEQ2|MURD_BACHK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158512491|sp|A0RHT3|MURD_BACAH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766037|sp|C1EPS6|MURD_BACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49330942|gb|AAT61588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418357|gb|ABK86776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|195991455|gb|EDX55421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196030567|gb|EDX69166.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225789057|gb|ACO29274.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228660202|gb|EEL15838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|228812152|gb|EEM58483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824393|gb|EEM70199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|300377572|gb|ADK06476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V+         LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|326562098|gb|EGE12426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 7169]
 gi|326567059|gb|EGE17181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC1]
 gi|326572224|gb|EGE22219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC8]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPENILAVTGTSGK 126
           A+ I++S   + +  S        I V+ + + F+    +R L       I+A+TG++ K
Sbjct: 62  ADQIIISPGINPRTPSIVAAKAQGIPVISDVQLFIDTLKARDLTQATNTPIIAITGSNAK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V + V ++ + +G+    +G    I          TP       AL  L+ Q +  V 
Sbjct: 122 STVTTLVGEMAKHAGMI---VGVGGNIG---------TP-------ALELLTIQNMDLVV 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE        AII
Sbjct: 163 LELSSFQLEH--ISNLAAQGATILNLSADHLDRHDGMVDYLAQKLRIFENC----QTAII 216

Query: 247 YADDA 251
             DDA
Sbjct: 217 CQDDA 221


>gi|299131924|ref|ZP_07025119.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
 gi|298592061|gb|EFI52261.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
          Length = 468

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 129/335 (38%), Gaps = 52/335 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GADVLVVSTA---------IKRDNPELMAARAQRIPVVRRAEMLAELMRLKSCIAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +     L    I     I+++  + RL     +                
Sbjct: 117 GKTTTTSMVATLLDAGALDPTVIN-GGIINAYGTNARLGAGDWMV--------------- 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + S     +  +D         TN+  +H+D+ +T +A   A  R F E +P    A
Sbjct: 161 VEADESDGTFLKLPVD-----VAIVTNVDPEHLDHFKTFEAVQEA-FRHFVEGVPFYGFA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLK--------KVCAIHNKQQVT 292
           ++  D A  + ++ +  +   R+++ G       + + L+        KV   H K    
Sbjct: 215 VMCIDHAVVQALVGKIEDR--RIITYGENPQADARLVDLQPFTGGSKFKVEIRHRKAGAA 272

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +     D + P+PG     NA  A  +   +G+    + + L     V  RF   G  
Sbjct: 273 HVIS----DLVLPMPGRHNALNATAAIAVAYEVGMSDEAIRKALAGFGGVKRRFTRTG-E 327

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             G  +  DY H    +  +LK  R  T GR+I V
Sbjct: 328 WNGVTVIDDYGHHPVEIAAVLKAARDSTKGRVIAV 362


>gi|295695332|ref|YP_003588570.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
 gi|295410934|gb|ADG05426.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 125/327 (38%), Gaps = 41/327 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+ +V SSA S          + P LV    R    L  S L  +    +  +AV G  
Sbjct: 64  GADCVVYSSAVS---------PDNPELVEARRRGVRILHRSELLAEILQAKKGIAVAGAH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +S +  +  ++GL  ++ +G    IS+  + N      P  +A+A          
Sbjct: 115 GKTTTSSMIAFVMNQAGLDPTYIVG--GVISNLGE-NAKAGLGPYAVAEA---------- 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               E+    L+ H    +       TN+  DH++ +  +        + F   + +   
Sbjct: 162 ---DESDGTFLNYHPYVAV------VTNIEPDHLENYGGKFENLRGAYKRFLGQVREGGL 212

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--D 301
           A++ ADD    E+         R +  G+        +   +H+          ++   D
Sbjct: 213 AVLCADD---PELSNLGSQLAGRTVWYGFSSGADWTAQDVDLHDGHSRCRVFYRREHVGD 269

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   + +AL A  +C   GI  + + E L        RF+ +  +  G  I  D
Sbjct: 270 LTLSVPGRHNISDALAAIAVCREAGIPFSTIAEILSSFRGAKRRFQQI-ADVAGVLIVDD 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVF 388
           YAH    +E  L   RT T  RI+ VF
Sbjct: 329 YAHHPTEIEATLAAART-TGRRIVAVF 354


>gi|121998869|ref|YP_001003656.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
 gi|189028995|sp|A1WYU2|MURC_HALHL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121590274|gb|ABM62854.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
          Length = 486

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 130/332 (39%), Gaps = 43/332 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG +A+VVS+A +  +          I VV        L   R       + +AV GT G
Sbjct: 83  QGMDAVVVSTAVTEDNPEVQAARQQRIPVVPRAEMLAELMRFR-------HGVAVAGTHG 135

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +      S L+  ++ PT  I       RL +        A  YL ++     
Sbjct: 136 KTTTTSLLA-----SCLAEGELDPTFVIG-----GRLISAGAHARLGAGPYLVAE----- 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKES 242
           + E+ +  L       +K +  + TN+  DH+    T    F A  R F E L   P   
Sbjct: 181 ADESDASFLH------LKPMMAAVTNVDADHLG---TYGGDFEALRRTFIEFLHHLPFYG 231

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDF 300
            A++  DD    EV +     G  VL+ G+ +   + +  + A  ++ +  I   +G  F
Sbjct: 232 LAVLCIDD---PEVRRLRGEIGRPVLTYGFSEDADVRVSGMEADGHRTRFRIEEGDGAAF 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGR 357
                LPG   V NA  A  L   +G+D A +   L     +  RF+    +        
Sbjct: 289 AVELSLPGRHNVLNAAAAIALARELGVDVAAIQRALSSFQGIGRRFQVYPDIPLAEGAAA 348

Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
           +  DYAH    LE  L+  R      R++VVF
Sbjct: 349 LVDDYAHHPRELEATLQAARAAWPERRLVVVF 380


>gi|254283739|ref|ZP_04958707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
 gi|219679942|gb|EED36291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
          Length = 456

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 155/384 (40%), Gaps = 70/384 (18%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ V+ DSR + AG +FVA+ G + DGH ++  A A GA A VV    +++        
Sbjct: 26  RVSGVAIDSRTVSAGDLFVALRGERVDGHDYVAAAHAGGAVAAVVEEPVAVE-------- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P L V  +   LSL A  +  ++   ++ +TG++GK+S  + +  +         + G
Sbjct: 78  -IPQLQVAASVDVLSLIAGMVREQYRGVLVGITGSAGKTSAKTLLASVLA-------EAG 129

Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSY------------------LSSQGVTHVSVEA 189
           PT   +S  Q+N +  P  ++ L  A+ +                  ++  G+T +   A
Sbjct: 130 PT-LATSGNQNNEIGVPLTLFRLDPAIEFAVVEMGAGRPGDIAHLCAVARPGITALLNAA 188

Query: 190 SSHGLDQHRLDGIKLIAGS-FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   +D I    G     LG   +      Q Y                 A ++ 
Sbjct: 189 PAHLANYDSVDAIARTKGEILAALGSGDLGVFNGDQRY-----------------ADVWR 231

Query: 249 DDAYSKEVMKRAHNAG--CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + A   EV     + G   R +++ Y+G K  H +            +      FD    
Sbjct: 232 EMAAPAEVRTFGMSKGVDVRAINIQYEGYKGTHFR------------VKTPEDGFDVALK 279

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   VYNAL A  +  A+G+  A +   LEK+    GR   +  +S G +I  D  + 
Sbjct: 280 LPGSPGVYNALAAIAIAGALGLSPAAIARGLEKVSPERGRGRALRASS-GAQIVDDSYNA 338

Query: 366 SNSLEMILKNIRTITSGRIIVVFG 389
           +        +   +T GR  ++ G
Sbjct: 339 NPVAVAAAIDTLAMTPGRRSLILG 362


>gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 829

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 156/393 (39%), Gaps = 43/393 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+ +  V+ DSR +  G +FVA+ G   DGH F+ QA   GA  +V+             
Sbjct: 23  EQPLRAVAIDSRRVLPGDLFVALGGRHCDGHDFVAQAEGAGASLVVLRRDRCPDSGPGPG 82

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++   L+V +    L   A+     H   ++AVTG++GK+ V         ++ L++  
Sbjct: 83  CAH---LLVADPLLALQRLAAWYRRTHIRRVVAVTGSNGKTVV---------KTALTALL 130

Query: 147 IGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
            G     SS    N ++  P  +  A   + L   GV    + A     +  RL+ I + 
Sbjct: 131 AGRFRVASSPGSWNSQVGVPLAVLTAPPGTEL---GVFEAGISAPG---EMERLEAILQP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAH 261
             G   N+G  ++    ++      K+RLF+ +       +I  DD     +    +R H
Sbjct: 185 DHGVLVNVGLANLGSFGSRAVTAREKLRLFQGM--DAHSWVIAPDDPLVNALPLPCRRIH 242

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +G + +   L     +   Q QVT+    +             V + L+A  
Sbjct: 243 PGAGPPRLLGQRSRGNGLLLQLDLGGCQAQVTVHTRSRPL-----------VDDLLIALT 291

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-SLEMILKNIRTI 379
               +G+ +A + E L+     P R E   T   G  I  D A     S++  L  +   
Sbjct: 292 AAHHLGVPAAEMAEVLQDYTFGPTRMETWRT-PEGITIINDTASDDPLSVQTALATVAAF 350

Query: 380 T-SGRIIVVFGCGGDR---DQGKRPIMGKIALD 408
              GR + VFG  GD    +Q +  ++G++A +
Sbjct: 351 PEGGRRLFVFGGMGDLGPCEQREHALIGRMAAE 383


>gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132]
 gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132]
          Length = 802

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 27/222 (12%)

Query: 35  SDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-RSNTP 91
           +DSR +      IF AI G + DGH FIP+   +G    VV      +     + +    
Sbjct: 15  TDSRFLSKPDSSIFFAIKGERHDGHQFIPELYDKGIREFVVEKRAFNEKLKGILEKEEVK 74

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+VD++   L   A +   K+   ++ +TG++GK+ V  ++  +  +     F I  + 
Sbjct: 75  ALLVDSSILTLQEMAGKNRQKYDHPVIGITGSNGKTIVKEWLNALLDK----DFDIVKSP 130

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                      +  S I +A ++  +SS+   G+    +          ++  I+   G 
Sbjct: 131 R----------SYNSQIGVALSVWEMSSRYQLGIFEAGISLPGEMKALQKI--IQPTIGV 178

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           FTN+G  H +  ++ +     K++LF      +S  +IY  D
Sbjct: 179 FTNIGSSHSEGFESDRQKIREKLQLF-----VKSETLIYCRD 215


>gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
 gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
          Length = 779

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 128/331 (38%), Gaps = 47/331 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA+AIVVS+A         I  + P ++     +   L  S +     +  + +AV G+
Sbjct: 70  RGADAIVVSTA---------IPYDNPEVIAAWDLRIPKLHRSDINAALVNEYDGIAVAGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +     R+G+S     PT  +     D  L T + +  ++   YL S+   
Sbjct: 121 HGKTTTTSMIGVTLDRAGVS-----PTVIVGGEVPD--LGTNAKLGTSR---YLVSEA-- 168

Query: 184 HVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                      D+     +KL       TN+  DH+D++ T +    A  R F   +  +
Sbjct: 169 -----------DESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEA-FRTFISQIDAD 216

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGK 298
             A++     Y  E+++R      R + V Y        +   I     V   T+   G 
Sbjct: 217 GTAVL----CYENEILRRLGAETDRTV-VSYAIDAAADYRAADIETCGSVISFTVFERGT 271

Query: 299 DFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               +   +PG   V NAL    +    G+D   + + L   H    RF+  G   RG  
Sbjct: 272 ALGRISLHIPGRHNVLNALACVAVARLAGLDFDRIADALAHFHGAKRRFQTKG-KERGIW 330

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  DYAH    +   L   R    GR++ VF
Sbjct: 331 VVDDYAHHPTEIAATLAAARQTEPGRLVCVF 361


>gi|262170650|ref|ZP_06038328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           MB-451]
 gi|261891726|gb|EEY37712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           MB-451]
          Length = 440

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDKPVIAITGSNGKSTVTDLSGVLANAAGVKT------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S +   +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 147 ------ALDLISPEVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 198 RQAKLRIFDH----AETAVVNADDVQTFP----DHAAHLQVVTFG-------------VE 236

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 237 QPAQFSVAEHQGREYLFARDNAVLASSELSLVGRHNVANVLTVLALLDSAGVNVRLALDA 296

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 297 LKSYTGLTHRCQVVADN 313


>gi|323142002|ref|ZP_08076853.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413534|gb|EFY04402.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
          Length = 464

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 22/189 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ T++  + A  + F   + +   A++  D+A   +V + A      V++
Sbjct: 183 TNIEDDHLDHYGTEENIYQA-FKQFVGNIKEGGKAVLCFDNA---KVRRLAAETDKEVIT 238

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAA 319
            G +G+        A +  + ++  V+G  +   +           +PG   V N++ A 
Sbjct: 239 YGVEGE-------GADYIARDISYGVDGTSYKLYYKGEFVTEVHLIVPGRHNVLNSMGAF 291

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                +GI +  +L  L+K      RFE  G    G  +  DYAH    + + LK  R  
Sbjct: 292 AAAHEMGIATDKILASLKKFGGAKRRFETKG-KVNGVWVVDDYAHHPTEIGVTLKAARQT 350

Query: 380 TSGRIIVVF 388
              R++ VF
Sbjct: 351 KPERLLCVF 359


>gi|209550173|ref|YP_002282090.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535929|gb|ACI55864.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+ D
Sbjct: 278 LVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GRII V
Sbjct: 337 YGHHPVEIKAVLRAAREACKGRIIAV 362


>gi|167647631|ref|YP_001685294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           sp. K31]
 gi|189082872|sp|B0T833|MURD_CAUSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167350061|gb|ABZ72796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter sp.
           K31]
          Length = 469

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 106/260 (40%), Gaps = 39/260 (15%)

Query: 102 LSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           + LFA R     PE+    I+A+TGT+GKS+  + +  +C+++G                
Sbjct: 100 IELFA-RTVNAAPEHKKPKIIAITGTNGKSTTTALIGHLCRQAG---------------- 142

Query: 158 QDNRLTTPSPIYLAKALSYLSSQ--GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           +D R+       + + +  L     G  +V +E SS+ LD      +K  A    N+  D
Sbjct: 143 RDTRVGG----NIGEGVLGLEDMHGGAVYV-LELSSYQLDL--TSSLKPDAVVLLNISPD 195

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+D H     Y  AK R+F     K   AII  DD + +++      A  R +     GK
Sbjct: 196 HLDRHGGMDGYIAAKRRIFLN-QGKGDTAIIGVDDPWCQQICTEITAANRRTIWPISAGK 254

Query: 276 FI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +      L+ V      ++VT   E  D      LPG     NA  A     AIGI + 
Sbjct: 255 AMGRGVYALQGVLYDATGERVT---EMADLLRARSLPGRHNWQNAAAAYAAAKAIGIPAH 311

Query: 331 LVLEHLEKLHVVPGRFEFVG 350
             ++ L     +  R E VG
Sbjct: 312 QAVDGLMSFPGLAHRMETVG 331


>gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 98/463 (21%), Positives = 169/463 (36%), Gaps = 84/463 (18%)

Query: 31  NEVSS----DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           NEV S    DSR +    +FV IVG   D H F+ +A+      + +SS   +      +
Sbjct: 30  NEVFSNIVIDSRQVDKDSLFVPIVGENNDAHKFL-EAVYNSGCKVAISSKKDI-----FL 83

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + +  I++VD+T K L      +  K    ++ VTG+ GK++    V        LS  +
Sbjct: 84  KKDFNIVLVDDTTKALQSLGKYIRKKLNLPLVGVTGSVGKTTTREMVAL-----ALSDLK 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +        F   N     S + +   LS +  + +  + +  S     +     +    
Sbjct: 139 V--------FKTPNNFN--SQVGVPITLSRIKDEEIGVIELGMSKFDEMEKIAKIVNCDC 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI+   T++     K  + + +  + S   + AD+       KR       
Sbjct: 189 ALVTNIGTAHIENLFTRENIRTEKFHIMDGM-KENSVVFLNADNDLLNNSPKRE------ 241

Query: 267 VLSVGYQGKFIHLK--KVCAIHNKQ--------QVTISVEGKDFDFLFPLPGEFQVYNAL 316
               G   KF   K  K C  +           +    +EGK       + GE Q+ NAL
Sbjct: 242 ----GIIYKFFSAKGNKDCEYYASDIVFNNAMPEFNAHIEGKTLRVHLNVFGEHQISNAL 297

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +     +      +HLE       R E +    RGG   +D  + ++   M     
Sbjct: 298 AALAVADHYNLSIESAAKHLEDFRGFSHRQELI---IRGGLTVIDDTYNASPDSM----- 349

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                  I ++ G    R                 IAI+ D     ED + +  E    I
Sbjct: 350 ----KASISILKGFNAKR----------------KIAILADMKELGEDEKNLHRE----I 385

Query: 437 PGFIEKGNRIEAIRTAIEMLNK------QDVLVVAGKGHETVH 473
             FI K  +++A+ T  E+  +      ++VL  + + +ET+ 
Sbjct: 386 GDFINKNVKVDAVFTVGELAKEIISNINENVLTKSFEDNETLE 428


>gi|326566289|gb|EGE16441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 103P14B1]
 gi|326574823|gb|EGE24753.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 101P30B1]
          Length = 468

 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPENILAVTGTSGK 126
           A+ I++S   + +  S        I V+ + + F+    +R L       I+A+TG++ K
Sbjct: 62  ADQIIISPGINPRTPSIVAAKAQGIPVISDVQLFIDTLKARDLTQATNTPIIAITGSNAK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V + V ++ + +G+    +G    I          TP       AL  L+ Q +  V 
Sbjct: 122 STVTTLVGEMAKHAGMI---VGVGGNIG---------TP-------ALELLTIQNMDLVV 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE        AII
Sbjct: 163 LELSSFQLEH--ISNLAAQGATILNLSADHLDRHDGMVDYLAQKLRIFENC----QTAII 216

Query: 247 YADDA 251
             DDA
Sbjct: 217 CQDDA 221


>gi|254683377|ref|ZP_05147237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. CNEVA-9066]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  A I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSA-INADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V+         LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
 gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
          Length = 810

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 114/277 (41%), Gaps = 49/277 (17%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           V+G+ GK++V+S +  I Q +    S+ IG  +++S     N  +  S  ++A+A     
Sbjct: 109 VSGSHGKTTVSSLITAIFQTAKKDPSYAIGGLNSLSL----NGYSGSSEYFIAEA----- 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                       S G  +H L  + ++    TNL  +H+   +  +    + +  F   +
Sbjct: 160 ----------DESDGSLKHYLPKVAVV----TNLDNEHLSNFEGSKEKLASTIEEFTRKV 205

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQ------ 290
             E+P + +             +N  C+ L     G      + C   I++  Q      
Sbjct: 206 --ENPRLCF-------------YNGDCQELKGRISGTSYGFSQDCHLRIYSYSQNGWRSL 250

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++S  GKD+ D    L G+  + NA VA G+ + +GID   + E L+    +  R E  
Sbjct: 251 FSLSFLGKDYLDIDLNLIGKHNIANAAVAMGIALTLGIDEESIREALKNFAGIQRRMERK 310

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             + +    + DYAH  + +   L+ +R     R IV
Sbjct: 311 NISEK-FLFFEDYAHHPSEISCTLRGLRDAVGLRRIV 346


>gi|150390641|ref|YP_001320690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017285|sp|A6TS63|MURD_ALKMQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149950503|gb|ABR49031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
          Length = 455

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 25/198 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G+  NL  DH++ H+T + Y  AK+ LF     ++   + Y DD  S+E  K        
Sbjct: 182 GTLLNLTPDHLNRHKTIENYREAKLNLFMNQSLQDYAVLNY-DDITSREAGK-------- 232

Query: 267 VLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAA 319
             ++  Q  +   K++       + Q +TI  + K +D +      + G+  + NAL A 
Sbjct: 233 --TLAAQKIYFSRKQILEEGVFVDNQLITIQTKEKRYDVIHIDEIKILGQHNLENALAAT 290

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   +G+ +  + + L     V  R EFV      G  Y++ +  +N+      +I+ I
Sbjct: 291 AMTFILGVSAEDIAKGLRNFPGVAHRLEFV--EEIEGVKYINDSKGTNT----DASIKAI 344

Query: 380 TSGRIIVVFGCGGDRDQG 397
            + +  ++   GG +D+G
Sbjct: 345 EAAQAPIILLAGG-QDKG 361


>gi|291460928|ref|ZP_06025930.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380013|gb|EFE87531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 613

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 36/250 (14%)

Query: 9   KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           KDF E++     N+L +F    ++ ++  V  DSR +  G +F AI     +G+ +I   
Sbjct: 178 KDFSEILKREKLNEL-LFEEFSKKVQVKNVVMDSRKVTEGSLFFAI----NNGNSYIKDV 232

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T   +  I+ V +T   +   A++   K    ++ +TG+
Sbjct: 233 LDKGASLVIADN---------TDVVDERIVKVSDTVATMQDLATKYRNKLDIQVIGITGS 283

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +  +   +    G          +N +  P  +     L+    +   
Sbjct: 284 NGKTSTKDIVYSLLSKKAKTLKTEGN--------YNNHIGLPYTL-----LNVTDEEKFV 330

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +  SS G +  RL  I     +  TN+G  HI++ +T+   F AK  L  E + KE 
Sbjct: 331 VLEMGMSSLG-EIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELL-EFVDKE- 387

Query: 243 PAIIYADDAY 252
              +  DD Y
Sbjct: 388 DTFVCGDDVY 397


>gi|222149135|ref|YP_002550092.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium vitis S4]
 gi|254763734|sp|B9JY53|MURC_AGRVS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221736120|gb|ACM37083.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium vitis S4]
          Length = 471

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 24/192 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  +       
Sbjct: 181 TNIDPEHLDHYGNFDA-VRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIEDRKVVTYG 239

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNA 315
               A  R  +V  +G     K +  +  +++ T    G+ F   D   P+PG   + NA
Sbjct: 240 ENPQADVRFFNVRNEGT----KSIFDVEIRRRRT----GRVFSFKDLTLPMPGRHNISNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   + I    + + L     V  RF   GT + G +++ DY H    ++ +LK 
Sbjct: 292 CAAIAVANRLDISEEAIRKGLSTFGGVKRRFTLTGTWN-GVQVFDDYGHHPVEIKAVLKA 350

Query: 376 IRTITSGRIIVV 387
            R    GRII V
Sbjct: 351 ARESCKGRIIAV 362


>gi|146281469|ref|YP_001171622.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri A1501]
 gi|189029022|sp|A4VIH9|MURC_PSEU5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145569674|gb|ABP78780.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas stutzeri A1501]
 gi|327479644|gb|AEA82954.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri DSM
           4166]
          Length = 485

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 123/327 (37%), Gaps = 58/327 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +    +     I VV        L   R       + +AV GT GK
Sbjct: 77  GADVLVVSSAINSANPEVALALEQRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 129

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  +    GL      PT     F    RLT         +  YL ++     +
Sbjct: 130 TTTTSLLASVFAAGGLD-----PT-----FVIGGRLTAAGTNAQLGSSRYLIAE-----A 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            E+ +  L       ++ +    TN+  DH+  +             F   LP    A++
Sbjct: 175 DESDASFLH------LQPMVAVVTNIDADHMSTYGGDFGKLKKTFVEFLHNLPFYGLAVL 228

Query: 247 YADDAYSKEVMKR----------AHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTI 293
             DD   +E++ +          + +A  R ++V   G +  F  L+  C     + + +
Sbjct: 229 CVDDPVVREIIPQIGRPTTTYGFSEDADVRAINVRQEGMRTYFTVLRDGC-----EPLDV 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-N 352
           SV          +PG   V NAL    +    GID   +++ L +   V  RF+  G   
Sbjct: 284 SVH---------MPGNHNVLNALATIAIATDEGIDDEAIVQGLAEFAGVGRRFQVYGNLP 334

Query: 353 SRGGRIYV--DYAHTSNSLEMILKNIR 377
             GG + +  DY H    +  ++K +R
Sbjct: 335 VDGGSVMLVDDYGHHPREVAAVIKAVR 361


>gi|115372723|ref|ZP_01460029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823490|ref|YP_003955848.1| UDP-n-acetylmuramoylalanine--d-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370204|gb|EAU69133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396562|gb|ADO74021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 454

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 39/184 (21%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKH 113
           H  +P  + +    +VVS    L   +F A   +  PI   V+   +FLS  A  L+G  
Sbjct: 60  HGPVPPGLLESQALVVVSPGVPLSRPEFKAARAAGVPIWGEVELASRFLS--AVPLFG-- 115

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
                 +TGT+GKS+  +   ++  R G  +F  G      S A                
Sbjct: 116 ------ITGTNGKSTTTALTGELFSRGGGRTFVGGNLGRPFSEAA--------------- 154

Query: 174 LSYLSSQGVTHVSVEASS---HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L+ +    + VE SS    G+ Q R  G  ++     NL  DHID +++  AY  AK
Sbjct: 155 ---LTPEAWDALVVELSSFQLEGIQQMRARGAAIL-----NLTPDHIDRYESHAAYGQAK 206

Query: 231 MRLF 234
            R+F
Sbjct: 207 TRIF 210


>gi|114704920|ref|ZP_01437828.1| UDP-N-acetylmuramate--L-alanine ligase [Fulvimarina pelagi
           HTCC2506]
 gi|114539705|gb|EAU42825.1| UDP-N-acetylmuramate--L-alanine ligase [Fulvimarina pelagi
           HTCC2506]
          Length = 471

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 12/186 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++ T +    A  R F E +P    A++  D    + V+    +   RV++
Sbjct: 181 TNIDPEHLDHYGTFERVKEA-FRSFVENVPFYGFAVMCIDHPVVQSVVSEIEDR--RVIT 237

Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISV-------EGKDFDFLFPLPGEFQVYNALVAAGL 321
            G   +  +  + V     K   +++V       E    +   P+PG+  V NA  A  +
Sbjct: 238 YGENPQADVRFENVSFEPGKSHFSVTVRDRVKGTETNLGELTLPMPGKHNVSNATAAIAV 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+    + + L     V  RF   G    G  IY DY H    +  +L   R   +
Sbjct: 298 ADRLGLSPEQIQKGLATFEGVKRRFTLTGVVD-GIAIYDDYGHHPVEIRSVLAAARASAN 356

Query: 382 GRIIVV 387
           GR+I V
Sbjct: 357 GRVIAV 362


>gi|238784570|ref|ZP_04628577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           bercovieri ATCC 43970]
 gi|238714536|gb|EEQ06541.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           bercovieri ATCC 43970]
          Length = 438

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 99/238 (41%), Gaps = 42/238 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ + +G   +Q+G    I                   AL+ 
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIG----------------VPALTL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +    V +E SS  L+      ++  A +  N+  DH D Y    Q Y  AK+R++E
Sbjct: 148 LKQEN-QLVVLELSSFQLET--TSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  V      A  R +S G      HL       NKQQ  I +
Sbjct: 205 ----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGEIWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +    L      L G     NAL A  L  A+GI  +  L  L     +P RF+ V
Sbjct: 250 RVRGEKVLNTREMKLTGRHNYTNALAALALADAVGIPRSSSLTALTTFTGLPHRFQLV 307


>gi|327399669|ref|YP_004340538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
 gi|327182298|gb|AEA34479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
          Length = 429

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 29/238 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  I   S DSR I+ G +FV I G + DG  F P+A+ +     +V            
Sbjct: 21  RDYTIKGFSIDSRAIKEGEVFVGIKGERFDGTDFAPEAVKKSKTFAIVEK---------- 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + + P ++V+N    L   A+    K     +A+ G+ GK++    V         + F
Sbjct: 71  -KVDCPHIIVNNALGALKRLATYKLKKSGAISVAIVGSVGKTTTKELV---------ADF 120

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                S   S   +N +     I + K L  +  +    V V  ++ G  +      +  
Sbjct: 121 LSCRYSVCRSLENENNI-----IGVCKTLLRVEDEDFCVVEVGINNPGEMEEIAAFFEPD 175

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              F N+   HI   +   A F  K +    ++ K S  +  ADD   KE  +   N+
Sbjct: 176 NVLFLNVTSTHIGNFENIDAIFKEKSK----IINKSSRLVYNADDEILKEAFEGKENS 229


>gi|167571348|ref|ZP_02364222.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           C6786]
          Length = 464

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 122/311 (39%), Gaps = 50/311 (16%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA A+VVS+A      +  A  R   PI+     R  +     RL     +  +A+ GT
Sbjct: 63  EGANAVVVSTAVRSDNPEVLAARRLGVPIV----PRAVMLAELMRL-----KQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    ++S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++         V+  G+     +  + V A   +   T+  EG
Sbjct: 208 PFYGSAVVCIDDPNVRQIVPLISKP---VVRYGFAPDAQVRAENVEARDGRMHFTVLREG 264

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G     G
Sbjct: 265 REPLPVVLNLPGLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEIPVAG 324

Query: 357 RIYV---DYAH 364
             Y    DY H
Sbjct: 325 GAYTLIDDYGH 335


>gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 788

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 155/415 (37%), Gaps = 75/415 (18%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139
           +++ I+ + P  +     K   L  S L     +N   LAVTGT GK++ +S +  +   
Sbjct: 66  YTSDIKESNPEFIAAQQLKCPMLHRSDLLALLMQNRKTLAVTGTHGKTTTSSLLSWVLHH 125

Query: 140 SGLS-SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +G   SF +G   + +++ AQ  +       ++A+A              E+    L   
Sbjct: 126 AGQDPSFAVGGVIAQLNANAQHGK----GDYFVAEA-------------DESDGSFLRYT 168

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
              GI       TN+  DH++Y+QT++                   A++ A   ++K+V 
Sbjct: 169 PYGGI------ITNIDLDHMNYYQTEE-------------------ALVGAFHQFAKKVE 203

Query: 258 KRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--------- 304
              H   C    R+  +  +G        C +H   Q T       FD  F         
Sbjct: 204 SADHLFWCGDDSRLQKLNIEGVSYGFNSDCQLH-ILQFTQKGWKTSFDITFRGLQYRQIE 262

Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DY 362
               G + V N+    GL + +GI+   + + L     V  R    G       +++ DY
Sbjct: 263 IAQIGSYNVLNSAAVFGLALQMGIEEHAIRKALSTFPGVGRRCTMRGQKQE--ILFIDDY 320

Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDN 419
           AH  N + + L+ IR  I   R+IV+F     R    +  +G      + AD+  VTD  
Sbjct: 321 AHHPNEIAVTLRAIRDAIGEKRLIVLF--QPHRYSRTKDCLGTYRGIFESADMVYVTDIY 378

Query: 420 PRSED------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              E        +K+  E+            R E +    + L   DV+V  G G
Sbjct: 379 SAGEQEIPGVTTQKVFDELSQDRSPDFYYSPRKEIVEKVYQTLFPHDVVVTLGAG 433


>gi|257066544|ref|YP_003152800.1| FolC bifunctional protein [Anaerococcus prevotii DSM 20548]
 gi|256798424|gb|ACV29079.1| FolC bifunctional protein [Anaerococcus prevotii DSM 20548]
          Length = 425

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 164/427 (38%), Gaps = 97/427 (22%)

Query: 110 YGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI------------- 153
           Y  +P++   ++ + GT+GK S A+ +     R         P  T              
Sbjct: 32  YFDNPQDKIKVIHIAGTNGKGSTANMIANTLSRENRVGLFTSPYMTKINEAISISGVDIS 91

Query: 154 -SSFAQD-NRLTTPSPIYLAKALS-------------YLSSQGVTHVSVEASSHGLDQHR 198
            S FA+  +RL  P      K L              Y   + V    VE    G     
Sbjct: 92  DSDFAEIIDRLKKPLEELDKKGLHNSYFEVLTAIMYIYFYEKKVDVAVVEVGLGG----S 147

Query: 199 LDGIKLI----AGSFTNLGRDHI--------DYHQTQQAYFNAKMRLFEELLPKESPAII 246
           LD   +I    A   T + +DHI        +  Q +      K  +F  L PKE     
Sbjct: 148 LDSTNIIKSPLACVITTISKDHIQILGDSLEEIAQNKAGIIKDKSEVF--LYPKEGTV-- 203

Query: 247 YADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
                  KEV +K+  N   R+ +                 +K+++ I   G D+ +F F
Sbjct: 204 -------KEVFIKKIENTSSRLHTF----------------DKEEINIIKTGPDYNEFSF 240

Query: 305 P--------LPGEFQVYNALVAAGLCIAIGIDSALVLEH--LEKLHVV--PGRFEFVGTN 352
                    L G  Q+YNA V A + +    D   + E    E L     PGR E +  N
Sbjct: 241 RSYKNIKTRLVGIHQIYNA-VTALITLDFLKDEFSICERDIYEGLLTTRNPGRLELINKN 299

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            R   + VD +H   +++ ++ +I +    ++IV F    D+D     ++  +A  +AD 
Sbjct: 300 PR---VLVDGSHNREAIDALIDSISSYKYRKLIVGFSILKDKDYDY--VIDSLA-KIADE 353

Query: 413 AIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            IVT   DNPR+ D +++ + +       IE  + ++A   + E+ ++ D+++  G  + 
Sbjct: 354 IIVTKIKDNPRAFDTDELYSLVKDKAKKAIEIVDLVKAYEYSKELAHEDDLVLWCGSLYL 413

Query: 471 TVHIVTN 477
              I+ N
Sbjct: 414 VGDILKN 420


>gi|113971900|ref|YP_735693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-4]
 gi|113886584|gb|ABI40636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-4]
          Length = 439

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 43/268 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++   +G    I +    + 
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMLREAGMA-VAVGGNIGIPAL---DL 151

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           LT  + I++                +E SS  L+  H L+    +A +  N+  DH+D +
Sbjct: 152 LTENADIFV----------------LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               AY  AK+RL+      +S +II+  DDA +        N+       G +      
Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K     H   ++    E         L G     N L A  L  A+G+D  ++ +     
Sbjct: 248 K---IYHGHSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTF 297

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +  R E VG   + G  YV+ +  +N
Sbjct: 298 TGLSHRCEVVGV--KAGVTYVNDSKATN 323


>gi|172057971|ref|YP_001814431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Exiguobacterium sibiricum 255-15]
 gi|226711910|sp|B1YIT8|MURD_EXIS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|171990492|gb|ACB61414.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Exiguobacterium
           sibiricum 255-15]
          Length = 449

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 20/190 (10%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           ++ +F NL   H+DYH    +Y  AK R+F   + +    ++ ADD   +EVM+ +  A 
Sbjct: 180 VSAAFLNLSPAHLDYHGDVTSYAAAKARIFSN-MDEAGRLVVNADD---EEVMRLSETAA 235

Query: 265 CRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              L+    Q  + H++       + ++    E         L G   + N L A  L  
Sbjct: 236 AERLTFSRRQDAYAHIENDMIFVGQTEILPVRE-------LALGGGHNLENVLAALTLIE 288

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-SLEMILKNIRTITSG 382
             GI    + + L     V  R E++G  + G ++Y D   T+N + E  L   ++    
Sbjct: 289 PFGISLTAIQDVLRTFGGVAHRTEYIGEFA-GRKVYNDSKATNNVATEAALSGFQS---- 343

Query: 383 RIIVVFGCGG 392
              +++ CGG
Sbjct: 344 --PIIWICGG 351


>gi|282878013|ref|ZP_06286821.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
 gi|281299848|gb|EFA92209.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
          Length = 443

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 132/316 (41%), Gaps = 45/316 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   +  G    I           P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKSAG---YDAGLAGNIGRSLALQVAEDPHEYYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   K       N+  DH+D Y    Q Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYKFKADIAILLNITPDHLDRYDNCMQNYVDAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++S  I + DD   K  +K+ +     + +V  Q  F  LK+  +I   ++   ++
Sbjct: 203 NQTAQDS-FIYWNDDPIIKRELKKYN-----IKAV--QCPFSELKEKGSIGYIEEGEYTI 254

Query: 296 EGKD-FDF---LFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
           E    F+       L G+  +YN+L AAG+   I GI + ++ + L     V  R E V 
Sbjct: 255 EKPTPFNMEQEALALTGKHNIYNSL-AAGIATDIAGIRNEVIRKSLSDFPGVEHRLEKVC 313

Query: 351 TNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
               GG  Y++ +  +N  +    L+++RT T    I++ G G D+     PI   +   
Sbjct: 314 --KVGGVQYINDSKATNVDACWYALESMRTPT----ILILG-GKDKGNDYGPIKDLVKEK 366

Query: 409 LADIAIVTDDNPRSED 424
              +  +  DN +  D
Sbjct: 367 CVALMYLGADNSKLHD 382


>gi|257454325|ref|ZP_05619588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
 gi|257448228|gb|EEV23208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
          Length = 486

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 51/247 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK-ALS 175
           I+A+TG++ KS+V + V ++ + +G   F++G    + + A D  L    PI +A   LS
Sbjct: 134 IIAITGSNAKSTVTTLVGEMVKNAG---FKVGVGGNLGTPALDLLL---EPIQMAVLELS 187

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF- 234
               Q  T+++ + ++                   N+  DH+D H     Y  AK R+F 
Sbjct: 188 SFQLQTTTNLAAKVAT-----------------VLNMSPDHLDRHGNMLGYHQAKHRIFQ 230

Query: 235 ---------EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
                    E+LL +     + ADD  +      A +     L     GK    +    +
Sbjct: 231 GVQSIVVNREDLLSRP----LVADDMPTISFGSNAPDMNQYGLIKDSDGKIWLARGRERL 286

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            N++ V             P+ GE  + NAL A  +    G+    +L  L+    +P R
Sbjct: 287 LNEKDV-------------PIKGEHNLMNALSALAIGELAGLPLESMLTTLKNFVGLPHR 333

Query: 346 FEFVGTN 352
            EF+ T 
Sbjct: 334 CEFITTT 340


>gi|50084464|ref|YP_045974.1| cyanophycin synthetase [Acinetobacter sp. ADP1]
 gi|49530440|emb|CAG68152.1| Cyanophycin synthetase [Acinetobacter sp. ADP1]
          Length = 914

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 145/360 (40%), Gaps = 57/360 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I A+TGT+GK++ +  +  I + +G     +G TST + +   N            A   
Sbjct: 486 IAAITGTNGKTTCSRMLAHILKMAG---HVVGQTSTDAVYIDGNVTVKGDMTGPVSAKMV 542

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L    V    +E +  G+ +  L       G+  N+  DH+           A+++    
Sbjct: 543 LRDPSVDIAVLETARGGIVRSGLGYQFCDVGAVLNVSSDHLGLGGVDTLDGLAEVKRVIA 602

Query: 237 LLPKESPAIIYADDAYS---------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-- 285
            + K++  ++ AD+AY+         K +M    +A  +++      + I L K   +  
Sbjct: 603 EVTKDT-VVLNADNAYTLKMAGHSPAKHIMYVTRDAENKLVR-----EHIRLGKRAVVLE 656

Query: 286 --HNKQQVTISVEGKDFDFLFP--LPGEFQ------VYNALVAAGLCIAIGIDSALVLEH 335
              N  Q+ I   G     ++   +P   +      V NA+ AAG+  A+G       ++
Sbjct: 657 KGLNGDQIVIYENGTQIPLIWTHLIPATLEGKAIHNVENAMFAAGMAYALG-------KN 709

Query: 336 LEKLHV-----------VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGR 383
           L+++ +            PGR      +  G R+ +DY H   ++  + + + R    GR
Sbjct: 710 LDQIRIGLRTFDNTFFQSPGRMNVF--DKHGFRVILDYGHNEAAVGAMTELVDRLNPRGR 767

Query: 384 IIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPR----SEDPEKIRAEIIH-GIP 437
            ++   C GD RD+    I  K+A    +     DD+ R     E P+ +R  +I  G+P
Sbjct: 768 RLLGVTCPGDRRDEDVVAIAAKVAGHFDEYYCHRDDDLRGRAPDETPKIMRDALIQLGVP 827


>gi|261254015|ref|ZP_05946588.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
 gi|260937406|gb|EEX93395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
          Length = 451

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 114/282 (40%), Gaps = 31/282 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVG--GVLGNFGVSARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----K 201

Query: 232 RLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           R F  L+   P     +    D   ++V++R    GC      + G+  + +    I + 
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDIALEDVLQR----GCWS-ETEFTGQQANWRAEKLIADG 256

Query: 289 QQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  +  + ++   + + L G+  V NAL+A G    +G+   L  E L K      R E
Sbjct: 257 SEFKVFFQDEEVGIVKWDLVGDHNVDNALMAIGAARHVGVTPDLACESLAKFINTKRRLE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             G    G  +Y D+AH   ++E+ L  +R  + S  II V 
Sbjct: 317 LKG-QVNGVTVYDDFAHHPTAIELTLGGLRNKVGSDNIIAVL 357


>gi|258625125|ref|ZP_05720042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM603]
 gi|258582576|gb|EEW07408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM603]
          Length = 440

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDKPVIAITGSNGKSTVTDLSGVLANAAGVKT------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S +   +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 147 ------ALDLISPEVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 198 RQAKLRIFDH----AETAVVNADDVQTFP----DHAAHLQVVTFG-------------VE 236

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 237 QPAQFSVAEHQGREYLFARDNAVLASSELSLVGRHNVANVLTVLALLDSAGVNVRLALDA 296

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 297 LKSYTGLTHRCQVVADN 313


>gi|83592285|ref|YP_426037.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
 gi|109892732|sp|Q2RVU5|MURC_RHORT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83575199|gb|ABC21750.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
          Length = 481

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 135/339 (39%), Gaps = 62/339 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGK--HPENILAVTGTS 124
           A+ +V+SSA         ++++ P  V+D   +FL +   + + G+    +  +AV GT 
Sbjct: 68  AQVVVISSA---------VKASNP-EVMDARARFLPVVRRAEMLGELMRLKWSIAVAGTH 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V Q+   +GL      PT  I+    + R T           +YL + G   
Sbjct: 118 GKTTTTSLVAQLLDAAGLD-----PT-VINGGILNARGTN----------AYLGT-GEWM 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V     S G        I L+    TN+  +H+D++ T      A  R F   LP    A
Sbjct: 161 VVEADESDGTFTKLPATISLV----TNIDPEHLDFYGTFDKVREA-FRAFIHNLPFYGFA 215

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            +  D    + ++ +  +   ++++ G   +        A      VT+   G  FD + 
Sbjct: 216 CMCIDHPEVQAMIPQLQDR--KIITYGLSPQ--------ADIRGANVTLGPRGARFDVIL 265

Query: 305 ----------------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                           P+ G   V NAL A G+   +GID A++ + L     V  RF  
Sbjct: 266 TDRAGGGSRTIEGIRLPMYGRHNVLNALGAIGIAAEMGIDDAVIRDGLYHFEGVKRRFTR 325

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            G ++ G  +  DY H    +  +LK  R  T   +I V
Sbjct: 326 TG-DAGGVTVIDDYGHHPVEIAAVLKAARDATEREVIAV 363


>gi|262166446|ref|ZP_06034183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM223]
 gi|262026162|gb|EEY44830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM223]
          Length = 440

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 41/250 (16%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDKPVIAITGSNGKSTVTDLSGVLANAAGVKT------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S +   +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 147 ------ALDLISPEVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G +   +  +   A H
Sbjct: 198 RQAKLRIFDH----AETAVVNADDMQTFP----DHAAHLQVVTFGVE---LPAQFSVAEH 246

Query: 287 NKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++   +   +D   L      L G   V N L    L  + G++  L L+ L+    +
Sbjct: 247 QGREYLFA---RDNAVLASSELSLVGRHNVANVLTVLALLDSAGVNVRLALDALKSYTGL 303

Query: 343 PGRFEFVGTN 352
             R + V  N
Sbjct: 304 THRCQVVADN 313


>gi|163753860|ref|ZP_02160983.1| cyanophycin synthetase [Kordia algicida OT-1]
 gi|161326074|gb|EDP97400.1| cyanophycin synthetase [Kordia algicida OT-1]
          Length = 884

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 111/303 (36%), Gaps = 26/303 (8%)

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   + +  +++G T++   + Q+  L T      A A   L    V +  +E +  GL 
Sbjct: 500 IAHMAKMKGYRVGYTTSDGVYIQNRLLMTGDCTGPASAEFVLRDPTVNYAVLECARGGLL 559

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +  L       G  TN+  DH+      T +     K  + E +LP +  AI+ ADD   
Sbjct: 560 RAGLGFKNCDIGIVTNVAADHLGLKGIHTIEQLAKVKGVIPETVLP-DGTAILNADDELV 618

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTIS--------VEGKD 299
             + K   N  C V          H+K       +CAI+    +T+         ++  +
Sbjct: 619 YAMRK---NVECNVALFSLDENNPHIKAMQKRGGICAIYENGYITLCRGEWKMRVIKAVN 675

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGI---DSALVLE-HLEKLHVVPGRFEFVGTNSRG 355
               F     F + N L A       G    D    LE  +      PGR        + 
Sbjct: 676 VPLTFGGKATFMIQNVLPAVITAYLKGFTLEDMRAALETFIPSASQTPGRLNLF--KFKN 733

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I VDYAH    +  + + +  + +   I +    GDR       MG +A ++ D  I+
Sbjct: 734 FQILVDYAHNPAGMRALKQFVDNLNATEKIGIIAGIGDRRVEDNNEMGALAAEMFDEVII 793

Query: 416 TDD 418
             D
Sbjct: 794 RQD 796


>gi|116071267|ref|ZP_01468536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
 gi|116066672|gb|EAU72429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
          Length = 462

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 39/245 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK++V   +  + +++GL +  +G    +S+     ++ T   +     +  L
Sbjct: 113 VGITGTNGKTTVTHLLSHVLEQAGLRA-PMGGNMGVSAAEMALKIKTGDLLRPDWLVMEL 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           SS  +      A S G+              +T L  DH++ H T +AY   K      L
Sbjct: 172 SSYQIEAGPTLAPSIGI--------------WTTLTPDHLERHGTLEAYRAIK----RGL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---- 293
           L + S AI   DDA        AH +  +       G ++     C         I    
Sbjct: 214 LQRSSLAIFNGDDADLN-----AHRSSLK------SGIWVQTATPCPDDQPADFWIDDAG 262

Query: 294 SVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +++ ++   +FP     +PG     N L+     I IG+++  + +       VP R E 
Sbjct: 263 TIQARESGAMFPADALAMPGAHNRQNQLLVTAAAIQIGLNAEQIAQGFRSFPGVPHRLER 322

Query: 349 VGTNS 353
           +G+ +
Sbjct: 323 LGSTA 327


>gi|149377264|ref|ZP_01895011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
 gi|149358452|gb|EDM46927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
          Length = 446

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 26/142 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GK++V + V ++ + +G    ++G             + TP       AL  
Sbjct: 111 IIAITGSNGKTTVTTLVGEMARAAG-RRVEVG-----------GNIGTP-------ALDL 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  +G     +E SS  L+  R   +  +A +  N+  DH+D +  + AYF AK R+F  
Sbjct: 152 LG-RGADLYVLELSSFQLETTR--ELNALAATVLNVSDDHMDRYPDKMAYFQAKQRIFNG 208

Query: 237 LLPKESPAIIYADDAYSKEVMK 258
                  A++  DDA S  + +
Sbjct: 209 C----QNAVVNLDDALSTPMAR 226


>gi|227512223|ref|ZP_03942272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
 gi|227084617|gb|EEI19929.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
          Length = 460

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 39/255 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           I+ VTG++GK++  + + +I   +R    ++  G    I   A +  L + +   +   L
Sbjct: 114 IIGVTGSNGKTTTVTMITKILNEERKKGHAYAAG---NIGVSATETALKSTADDTIVMEL 170

Query: 175 SYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           S     G+     HV+V                      TN+  +H+DYH+T++ Y NAK
Sbjct: 171 SSFMLLGIKKLHPHVAV---------------------LTNIFSNHLDYHKTRKNYVNAK 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           MR+     P +   + +  D + +++ KR+              +  + K     +N + 
Sbjct: 210 MRITMNQTPDDFFVVNFDSDEW-RQLSKRSRAQVVPFARTSEIDRGAYEKNGKLYYNDEF 268

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  + + K       +PG+  V NAL A      +G  +  +   LE    V  R +FV 
Sbjct: 269 IMNADDIK-------VPGQQNVENALAAIATAKILGKSNLAITNVLETFTGVRHRVQFV- 320

Query: 351 TNSRGGRIYVDYAHT 365
             + G + Y D   T
Sbjct: 321 LEADGRKFYNDSKAT 335


>gi|229174579|ref|ZP_04302109.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
 gi|228608884|gb|EEK66176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 24/182 (13%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           A   +VM   A++ G +VL    +    G  I    +C    K      VE  D      
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKENALCFKGEK-----VVEVGD----IV 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAH 364
           LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  ++Y D   
Sbjct: 275 LPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KVYNDSKA 332

Query: 365 TS 366
           T+
Sbjct: 333 TN 334


>gi|220927180|ref|YP_002502482.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium nodulans
           ORS 2060]
 gi|254766011|sp|B8IN63|MURC_METNO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219951787|gb|ACL62179.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium nodulans ORS
           2060]
          Length = 471

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 137/338 (40%), Gaps = 60/338 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSG 125
           AE +VVS+A         IR + P L +   R+   +  + +  +    ++ +AV GT G
Sbjct: 67  AELVVVSTA---------IRRDNPELALARERRLPVVRRAEMLAELMRFKSCVAVAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL    I     I+++  + R+                 +G   V
Sbjct: 118 KTTTTSLVATLLDAGGLDPTVIN-GGIINAYGTNARM----------------GEGDWMV 160

Query: 186 SVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VEA     D+     +KL A     TN+  +H+D+  +  A  +A  R F + +P    
Sbjct: 161 -VEA-----DESDGTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDA-FRAFIDNIPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHN-----------AGCRVLSV---GYQGKFIHLKKVCAIHNKQ 289
           A++  D    ++++ R  +           A  R++ V   G Q +F    +V     + 
Sbjct: 214 AVMCIDHPTVQDLVGRIEDRRIVTYGENPQADVRLIDVDLKGGQSRF----RVMIRDRRP 269

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              + +E    D + P+PG+    NA  A  +   +G+    +   L     V  RF   
Sbjct: 270 GFRLEME----DLVLPMPGKHNALNATAALAVAHELGVSPEAIRRALAGFGGVKRRFTRT 325

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           G    G +I+ DY H    ++ +LK  R  T GR++ V
Sbjct: 326 G-EWNGAQIFDDYGHHPVEIKAVLKAARASTEGRVVAV 362


>gi|160896913|ref|YP_001562495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
 gi|160362497|gb|ABX34110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
          Length = 471

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 153/376 (40%), Gaps = 29/376 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +D+R +QAG +FVA+ G + D + F+ QA   GA A +          +     +
Sbjct: 28  LTRVHTDTRTLQAGDLFVALKGERFDANQFLAQAREAGAAAALAHGGLEAAGLAGIEVPD 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ-RSGLSSFQIG 148
           +   +      + + FA  L        +AVTG++GK++V   V  I +  +G ++    
Sbjct: 88  SLAALGALATAWRARFALPL--------IAVTGSNGKTTVTQMVASILRAHAGEAAL--- 136

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             +T  +F  +N +  P  +    A   ++    G+ H    A    + Q     + L+ 
Sbjct: 137 --ATRGNF--NNSIGLPLSLMRMTAQHRVAVLEMGMNHPGEIAELAAIGQPT---VALV- 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +    LP +  A+  A D Y+    + A    C 
Sbjct: 189 ---NNAQREHQEFMHTVEAVARENGSVLLS-LPADGVAVFPAGDTYTPLWRELAAARQCL 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +      G  +H +    + +  Q T+     +      + G   V NAL AA    A G
Sbjct: 245 LFGESADGAQVHARDALWLGDAWQFTLVTPEGEAPVRLHIAGRHNVRNALAAAACAQAAG 304

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGR 383
           +  A +   L     V GR   +G + +G  + V    Y    +S+   ++ +R + + +
Sbjct: 305 VPLADIARGLSVFEPVQGRSRALGVSVQGRTVTVIDDSYNANPDSVAAAIEVLRELPAPQ 364

Query: 384 IIVVFGCGGDRDQGKR 399
           ++V+   G   DQG +
Sbjct: 365 LLVLGDMGEVGDQGPQ 380


>gi|312114846|ref|YP_004012442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219975|gb|ADP71343.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 470

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 22/154 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+  +    +   +G +S   G            R     P        +
Sbjct: 116 VIAITGTNGKSTTTALSNHLLNAAGRASVCGG---------NIGRAVLDLP-------PF 159

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  Q   H  +E SS  LD      +   AG   N+  DHID H + + Y   K +LF  
Sbjct: 160 VDGQ---HYVLELSSFQLDL--TPSLDPDAGILLNITPDHIDRHGSLEGYAAVKEKLFAN 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +    + A+I ADDA    +  RA   G R L +
Sbjct: 215 MTGGGT-AVIGADDALCDAIAARAEARGVRTLRI 247


>gi|261211501|ref|ZP_05925789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
 gi|260839456|gb|EEX66082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
          Length = 440

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 102/256 (39%), Gaps = 53/256 (20%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 147 ------ALDLISPDVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F         A++ ADD  +       H A  +V++ G +            H
Sbjct: 198 RQAKLRIFGH----AETAVVNADDTQTFP----DHAAHLQVVTFGVE------------H 237

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q      +G+++ F             L G   V N L    L  + G++  L L+ L
Sbjct: 238 AAQFSVAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDAL 297

Query: 337 EKLHVVPGRFEFVGTN 352
           +    +  R + V  N
Sbjct: 298 KSYTGLTHRCQVVADN 313


>gi|259418779|ref|ZP_05742696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
 gi|259345001|gb|EEW56855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
          Length = 472

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 21/129 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++AVTG++GKS+  + +  I +        +G  S ++       L    P+     
Sbjct: 119 PPKVIAVTGSNGKSTTVALLHHILE-------HVGRNSQMAGNIGRGVLDIDPPV----- 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                  GV  V +E SS+  D  R   +      FTNL  DH+D H     YF AK RL
Sbjct: 167 -----DGGV--VVLELSSYQTDLAR--ALTPDVAVFTNLTPDHLDRHAGMGGYFAAKRRL 217

Query: 234 FEELLPKES 242
           F E  P  +
Sbjct: 218 FAEGGPDRA 226


>gi|225859425|ref|YP_002740935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
 gi|225721821|gb|ACO17675.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
          Length = 457

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDVSLFA----DAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|170718784|ref|YP_001783967.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 2336]
 gi|189028994|sp|B0US68|MURC_HAES2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168826913|gb|ACA32284.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus somnus 2336]
          Length = 476

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 61/341 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  +VVSSA    +          I V+   +    +   R +G      +A+ GT G
Sbjct: 76  EGASVVVVSSAIKGDNIEVITAHEKRIPVIQRAQMLAEIMRFR-HG------IAIAGTHG 128

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT---STISSFAQDNRLTTPSPIYLAKA----LSYLS 178
           K++  + V  I  ++GL      PT     +   A  N     S   +A+A     S+L 
Sbjct: 129 KTTTTAMVAMIYAQAGLD-----PTFVNGGLVKSAGTNAYLGCSRYLIAEADESDASFLH 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q +  V        ++ +                  H D+ + +Q Y N     F   L
Sbjct: 184 LQPMVSVVTNIEPEHMETY------------------HGDFEEMKQTYVN-----FLRNL 220

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV------- 291
           P    +++ ADD     +M+ +   G +V++ G+  +  +      I + QQ        
Sbjct: 221 PFYGLSVMCADDPV---LMELSSQVGRQVVTYGFSDEADY-----RIEDYQQTGFQGHYT 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++  G+  D L  +PG+    NA  A  +    GI++  +L  L +      RF+ +G 
Sbjct: 273 VVAPNGERIDVLLNVPGKHNALNATAALTVAKEEGIENEAILTALAEFQGAGRRFDQLGQ 332

Query: 352 NSR-GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             R  G++ +  DY H    + + ++  R    + RI+++F
Sbjct: 333 FIRPNGKVMLVDDYGHHPTEVNVTIQAARQGWENKRIVMIF 373


>gi|227524045|ref|ZP_03954094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088784|gb|EEI24096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 460

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 39/255 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           I+ VTG++GK++  + + +I   +R    ++  G    I   A +  L + +   +   L
Sbjct: 114 IIGVTGSNGKTTTVTMITKILNEERKKGHAYAAG---NIGVSATETALKSTADDTIVMEL 170

Query: 175 SYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           S     G+     HV+V                      TN+  +H+DYH+T++ Y NAK
Sbjct: 171 SSFMLLGIKKLHPHVAV---------------------LTNIFSNHLDYHKTRKNYVNAK 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           MR+     P +   + +  D + +++ KR+              +  + K     +N + 
Sbjct: 210 MRITMNQTPDDFFVVNFDSDEW-RQLSKRSRAQVVPFARTSEIDRGAYEKNGKLYYNDEF 268

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  + + K       +PG+  V NAL A      +G  +  +   LE    V  R +FV 
Sbjct: 269 IMNADDIK-------VPGQQNVENALAAIATAKILGKSNLAITNVLETFTGVRHRVQFV- 320

Query: 351 TNSRGGRIYVDYAHT 365
             + G + Y D   T
Sbjct: 321 LEADGRKFYNDSKAT 335


>gi|65321239|ref|ZP_00394198.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus
           anthracis str. A2012]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 41  LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 99

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V+         LPG
Sbjct: 100 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLPG 150

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 151 QHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 207


>gi|225181532|ref|ZP_03734974.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167780|gb|EEG76589.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 26/142 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-----LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           ++ VTG+SGK+S    +  I ++ G     L S++ GP S  +   ++N  TT S   LA
Sbjct: 9   LIGVTGSSGKTSTILMLNSILEQCGNKPAMLESWK-GPAS-FTKLVKNN--TTGSRPLLA 64

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +            V VEA    L Q ++ G      + TNL  DH+    TQ+ Y   K 
Sbjct: 65  E------------VPVEA----LRQRQVKGEIFQCAALTNLTVDHLPACGTQERYHELKS 108

Query: 232 RLFEELLPKESPAIIYADDAYS 253
             F + LP  + A++ ADD  S
Sbjct: 109 EFFNQ-LPPSAKAVLNADDPRS 129


>gi|145297483|ref|YP_001140324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850255|gb|ABO88576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 427

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 112/283 (39%), Gaps = 49/283 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++   +GL   ++G    I + A +                 
Sbjct: 99  VIAITGSNGKSTVTTLVGEMIAEAGL---KVGVGGNIGTPALE----------------- 138

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +    +E SS  L+      ++  A    NL  DH+D +Q    Y  AKM + + 
Sbjct: 139 LLKQPMDLCVLELSSFQLETTH--SLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQH 196

Query: 237 LLPKESPAIIYADDAYSK-EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   ++  DDA ++ +V +   + G      G           C +  +  +T+  
Sbjct: 197 ----SKHILVNRDDAQTQPDVGQVWQSFGLDCNGYGR----------CLLDGRHWLTLHG 242

Query: 296 EGKDFDFLFPLP-----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           E      L P+      G     NAL A  LC A+GI     L  L +   +P R  FV 
Sbjct: 243 EP-----LLPVDEMKIVGAHNQANALAAMALCDAVGIPREPQLAVLRRFEGLPHRARFV- 296

Query: 351 TNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGG 392
               G R   D   T+    +  +  +R    GR++++ G  G
Sbjct: 297 REVNGVRWINDSKATNVGATLAAVAGVREAVKGRLLLLAGGQG 339


>gi|75675240|ref|YP_317661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           winogradskyi Nb-255]
 gi|74420110|gb|ABA04309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 149/370 (40%), Gaps = 31/370 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV +A   Q F+  +   
Sbjct: 28  ITGISIDSRTVAPGEAYFAIKGDVHDGHAFVGAALKAGAALAVVEAARRDQ-FALEL--- 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+    L   A     +    ++AVTG+ GK+S    ++ +    G +      
Sbjct: 84  -PLLVVDDVLAALRDLARASRARLAAQVIAVTGSVGKTSTKEALRGVLGAQGKTHV---- 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             +++SF  +N    P  +    A +  +    G+ H        G     +  ++    
Sbjct: 139 --SVASF--NNHWGVPLSLSRCPADARFAVFEIGMNHA-------GEITPLVKMVRPHVA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CR 266
             T +   H+++    +A  +AK  +FE + P +   ++  D+A    + + A   G  +
Sbjct: 188 IITTVEPVHLEFFSGVEAIADAKAEIFEGVEP-DGAVVLNRDNAQFARLQECARKLGIAK 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++ G   K        A+H     V   + G +  +   +PG     N+L         
Sbjct: 247 IVTFGADEKADARLLDLALHPAGSAVHAEILGSELTYKLGMPGRHMAMNSLAVLAAASLA 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM-----ILKNIRTI 379
           G D AL    L +     GR        RGG  + +D ++ +N   M     +L   +  
Sbjct: 307 GADLALAGLALSQAQPAAGRGVRRALAVRGGEALLIDESYNANPASMAAALNVLGEAKVG 366

Query: 380 TSGRIIVVFG 389
           T GR I V G
Sbjct: 367 TQGRRIAVLG 376


>gi|24213538|ref|NP_711019.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           interrogans serovar Lai str. 56601]
 gi|30316039|sp|Q8F7V4|MURD_LEPIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24194322|gb|AAN48037.1|AE011269_3 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 463

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 69/356 (19%), Positives = 131/356 (36%), Gaps = 55/356 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT GKS+  S +  + + S                 +   L  P         + 
Sbjct: 104 IIGITGTDGKSTTTSLIAHLLKES------------FPDLKEGGNLGIP--------FTS 143

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              + ++   +E SS+ L+      + L    F NL  DH++ H+T + YF AK+++   
Sbjct: 144 FCKESISLAVLELSSYQLEDS--SPLHLDVSVFLNLASDHLERHKTMENYFQAKLKI--- 198

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVC---AIHNKQQVT 292
                      AD + S   +  +     R+L S+ YQ K +   K     A  ++  + 
Sbjct: 199 -----------ADLSNSNHTLIVSEKIKERILNSISYQCKLLSFGKTSDSNAFLDENSLK 247

Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I      +D   F LPG     N   +      IG     +   +     +P RF+  G 
Sbjct: 248 IKTSKFVYDISKFYLPGTHNRENLAASILAAEEIGGKPESIQTRIPLFRGLPHRFQIAG- 306

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             + G  +++ + ++N   M+          +  ++ G G  + +  +P+   +   +  
Sbjct: 307 -EKLGISFINDSKSTNLHSMLAGMATWKNIDQTCLILG-GRPKQEDLKPLYNFLIRGIGC 364

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + +  +           RA    GI   I EK   +E +    E+  K ++  V G
Sbjct: 365 VVLFGE----------ARATWESGIKNIIGEKLYCVENLNDTFEIFKKGNIFPVPG 410


>gi|312959058|ref|ZP_07773577.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
 gi|311286828|gb|EFQ65390.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
          Length = 481

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 136/349 (38%), Gaps = 80/349 (22%)

Query: 57  HLFIPQAIAQGAEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            +FI       AEA  +VVSSA +  +          I VV        L   R      
Sbjct: 63  QIFIGHRAENAAEADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR------ 116

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            + +AV GT GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A
Sbjct: 117 -HGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEA 172

Query: 174 ----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S+L  Q +  V                        TN+  DH+    T    FN 
Sbjct: 173 DESDASFLHLQPLVAV-----------------------VTNIDADHM---ATYDGDFNK 206

Query: 230 KMRLFEEL---LPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSV---GYQ 273
             + F E    LP    A++  DD   +E++ +          + +A  R ++V   G Q
Sbjct: 207 LKKTFVEFLHNLPFYGLAVVCLDDPVVREILPQVKRPTVTYGFSEDADVRAINVRQEGMQ 266

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSAL 331
             F  L+      +++ + +SV          +PG   V N+L  A +CIA   G+    
Sbjct: 267 TYFTVLRP-----DREPLDVSVN---------MPGNHNVLNSL--ATICIATDEGVSDEA 310

Query: 332 VLEHLEKLHVVPGRFEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR 377
           ++E L +   V  RF+  G     GG + +  DY H    +  ++K +R
Sbjct: 311 IVEGLSRFAGVGRRFQVYGQLPVDGGDVMLVDDYGHHPTEVAAVIKAVR 359


>gi|237744449|ref|ZP_04574930.1| folylpolyglutamate synthase [Fusobacterium sp. 7_1]
 gi|229431678|gb|EEO41890.1| folylpolyglutamate synthase [Fusobacterium sp. 7_1]
          Length = 415

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 77/370 (20%)

Query: 103 SLFASRL----------YGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           S+F+ RL          Y  +P+N   ++ +TGT+GK SV++ V++I   +G   +++G 
Sbjct: 18  SMFSIRLGLDNIKEICKYLGNPQNSYKVIHITGTNGKGSVSTTVERILLEAG---YKVGK 74

Query: 150 TSTISSFAQDNRLT-----------------------------TPSPIYLAKALSYLSSQ 180
            ++      + R++                             T   +  A    Y    
Sbjct: 75  YTSPHILEFNERISFNDKYISNEDVAKYYEKVKKIIDEHNIQATFFEVTTAMMFDYFKDM 134

Query: 181 GVTHVSVEASSHGLDQHRLDGIKL---IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              +V +EA   G    R D   +   I    TN+  +H +Y      Y  AK +     
Sbjct: 135 KADYVILEAGMGG----RYDATNICDNIVSVITNVSLEHTEY-LGDTIYKIAKEK---AG 186

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISV 295
           + K  P  I+AD+  + +V K    A  + ++V   Y+    +L       N     I +
Sbjct: 187 IIKNCPYTIFADN--NPDVKKAIEEATDKYVNVLEKYKNSTYNLD-----FNTFSTNIFI 239

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G  +++   L G++Q  N L A  +   +GID  ++ E ++K+ V   RFE     S+ 
Sbjct: 240 NGNKYEY--SLFGDYQYKNFLCAYEVVKYLGIDENIIKEAVKKV-VWQCRFEVY---SKN 293

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  D AH    +E + K ++   +   +IV+     D+D   R  M +   +++   I
Sbjct: 294 PLVIFDGAHNLAGVEELTKIVKQHFSKDEVIVLVSILKDKD---RVSMFRKLNEISSCII 350

Query: 415 VTD--DNPRS 422
           +T   DNPR+
Sbjct: 351 LTSIPDNPRA 360


>gi|54023730|ref|YP_117972.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
 gi|54015238|dbj|BAD56608.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
          Length = 499

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 155/399 (38%), Gaps = 64/399 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLF-------------------IPQAIAQGAEAIVVSSA 76
           DSR I +G +F+A+ G + DGH +                   +P  + +     V +++
Sbjct: 34  DSRRIGSGDLFLALPGERADGHDYAAAAVAAGAAAVLAARPVGVPAVVVEPRRCSVPATS 93

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            +L    A     +   V+            RL       ++ VTG+SGK+S    +  +
Sbjct: 94  MAL----AHDADGSGAAVLAALAALARASVERLSAAGGLTVVGVTGSSGKTSTKDLLAAV 149

Query: 137 CQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEAS 190
                     +GP  +   SF  +N L  P     A A +      +S++GV H++  A 
Sbjct: 150 LA-------PLGPVVAPPGSF--NNELGHPWTALRATADTRFLVLEMSARGVGHIAALAE 200

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              +   R+       G   N+G  H+    +++A   AK  L E  LP +  AI+ ADD
Sbjct: 201 ---VAPPRI-------GVVLNVGTAHLGEFGSREAIARAKGELVEA-LPADGLAILNADD 249

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPG 308
                V   A     RV+ VG  G   +      +  + + T ++       +    + G
Sbjct: 250 ---PNVAAMAARTAARVVRVGLSGDADYRASEVRLDEQARATFTLHTPAGSTEIRLGVHG 306

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           E QV NAL AA +    G D A V   L     V  R   V T + G  +  D Y    +
Sbjct: 307 EHQVGNALAAAAVASECGADLATVAAALSGARAVSERRMDVRTTADGVTVVNDSYNANPD 366

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           S+   LK + T++           G+R +    ++G++A
Sbjct: 367 SVRAALKALVTMSR---------AGERPRRSWAVLGEMA 396


>gi|54310305|ref|YP_131325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum SS9]
 gi|60390455|sp|Q6LMF4|MURD_PHOPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46914746|emb|CAG21523.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Photobacterium profundum SS9]
          Length = 447

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V S + ++ + +G++   +G    I  FA  + L     +Y+ +  S+
Sbjct: 110 VVAITGSNGKSTVTSLIGEMAKEAGIN---VGVGGNIG-FAALDMLVNEHDLYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                     +E +S          ++L A  + NL  DH+D +   + Y  AKMR+FE
Sbjct: 166 ---------QLETTSS---------LQLKAAVYLNLSEDHMDRYNGLEDYSLAKMRIFE 206


>gi|253571213|ref|ZP_04848620.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839166|gb|EES67250.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 432

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 155/365 (42%), Gaps = 38/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G +F+A+ G   +G+ F  +A+  G A A++  S Y+       I  +  
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYA-------IEGDQR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+  + L   A+    +    ++ +TGT+GK++    +  +  RS    + +G   
Sbjct: 69  YILVDDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSRSHNILYTLGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  PS +   K     +   +  + + A+  G  +   +  +   G  TN
Sbjct: 128 -------NNHIGVPSTLLRLK-----TEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L  KE S   I+ D+AY   + +     G  ++  
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKEGSTVFIHHDNAYLMNIAE-----GLNLIPY 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           G +       ++    N   +T       +GK +     L GE+   NAL A  +    G
Sbjct: 231 GTEDDLYVNGRITG--NSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFG 288

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384
           ++ A + E L        R +   T+     + +D A+ +N   M+  L+N R +     
Sbjct: 289 VEDAKINEALSGYTPQNNRSQLKKTDDN--TLIID-AYNANPTSMMAALQNFRNMEVPHK 345

Query: 385 IVVFG 389
           +++ G
Sbjct: 346 MLILG 350


>gi|195953735|ref|YP_002122025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933347|gb|ACG58047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 446

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +V  DSR      +FVAI G K DGHL+I   + +     +V   +  ++  A  +S 
Sbjct: 21  IKDVFFDSRESIKDALFVAIKGEKTDGHLYIKNLLDENIAGFLVREDFDCKEILAKGKS- 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
              L   +T K L   AS        N++A+ G++GK++    +  +
Sbjct: 80  --CLKAKDTIKALQDIASLKRNSLKANVVAIAGSAGKTTTKELIAHV 124


>gi|312898962|ref|ZP_07758350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
 gi|310620124|gb|EFQ03696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
          Length = 454

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 109/260 (41%), Gaps = 26/260 (10%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL  DH+D H T +AY  AK R+F     K   AI+  DD+    V   A +    VL +
Sbjct: 187 NLTPDHLDRHHTMEAYGEAKKRIFLN-QDKNDYAILNYDDS---AVRAMASDLSGTVLYI 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIG 326
              G+      V A      + I +EGKD          L G+  + N L AA L    G
Sbjct: 243 SVHGEV----PVGAFAADGNLYIRMEGKDTCLCKETDLHLFGKHNIQNCLAAALLTYCAG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT-SNSLEMILKNIRTITSGRII 385
               ++   L +   V  R E+V  + +G   Y D   T +++ E  L+      SG +I
Sbjct: 299 ASIDVIRRVLTEFRGVEHRLEWV-RDVKGVPYYNDSKGTNTDASEKALEAF----SGHLI 353

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           ++ G G D+       M K+A    D  I+  +     + E  +A    G+      G  
Sbjct: 354 LIAG-GHDKMTDLTSFM-KLAARKVDTLILVGEAADRFEAEARKA----GMKDIRRVGFS 407

Query: 446 IE-AIRTAIEMLNK-QDVLV 463
           +E A+RTA E   K Q VL+
Sbjct: 408 MEKAVRTAYETAEKGQTVLL 427


>gi|46580910|ref|YP_011718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120601789|ref|YP_966189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris DP4]
 gi|62900546|sp|Q728U6|MURD_DESVH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158513900|sp|A1VBE6|MURD_DESVV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46450330|gb|AAS96978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562018|gb|ABM27762.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris DP4]
 gi|311234601|gb|ADP87455.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris RCH1]
          Length = 433

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 20/120 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E ++AVTGTSGK++  S    + +  GLS F  G             + TP   Y+    
Sbjct: 118 EPVIAVTGTSGKTTTVSLCAHMLRTQGLSVFLGG------------NIGTPLCEYV---- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  +    + +E SS  L        +       N+  +H+DYH   Q Y +AK RLF
Sbjct: 162 --LEGKRADVLVIEISSFQLQT--CSTFRPRVAMLLNITANHLDYHADMQEYIDAKFRLF 217


>gi|294635007|ref|ZP_06713524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
 gi|291091606|gb|EFE24167.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
          Length = 438

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 111/266 (41%), Gaps = 44/266 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++   +G   + +G    I                   AL+ 
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAHAAG---WPVGVGGNIG----------------VPALTL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      +K  A +  N+  DH++ Y    Q Y  AK+R++E
Sbjct: 148 LKQECRLYV-LELSSFQLETTH--SLKAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +        ++ ADDA +  +    H A  R +S G      HL       N+QQ  I +
Sbjct: 205 Q----ARACVVNADDALTMPI----HGADARCVSFGVDVGDYHL-------NRQQGEIWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +    L      L G     NAL A  L  A+G+  A  L  L     +  RF+ V  
Sbjct: 250 RVRGEKILNTSEMQLTGMHNYTNALAALALADAVGLPRASSLRALTTFRGLAHRFQLV-L 308

Query: 352 NSRGGRIYVDYAHTS-NSLEMILKNI 376
           +  G R   D   T+  S E  LK +
Sbjct: 309 DHNGVRWINDSKATNVGSTEAALKGL 334


>gi|303246305|ref|ZP_07332585.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
 gi|302492368|gb|EFL52240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
          Length = 441

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 103/266 (38%), Gaps = 57/266 (21%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E I+AVTG++GK++    V  + + +G   F  G             + TP   Y+    
Sbjct: 115 EPIVAVTGSNGKTTTVMLVSHLLEAAGRKVFTGG------------NIGTPLSEYV---- 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L+      V +E SS  L    +   +       N   +H+D+H   + Y +AK+ +F
Sbjct: 159 --LAGDPADVVVLEVSSFQL--QLVKSFRPKVAVLLNFSPNHLDWHADLEEYLSAKLNIF 214

Query: 235 EELLPKESPAIIYAD--DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               P ++ AI+  D  DA +     RA      V      G+F+   ++   HN+Q + 
Sbjct: 215 AAQRPGDT-AILPRDMRDALAGRSFTRAD-----VTWFEPSGRFV-CPRLAGAHNRQNME 267

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +       FL   P                  G+   +     E+    P R + +G  
Sbjct: 268 AA-------FLATQP-----------------FGVTEEIAKVAFERFAPAPHRLQIIG-- 301

Query: 353 SRGGRIYVD--YAHTSNSLEMILKNI 376
            +GG ++VD   A T  ++E  L++ 
Sbjct: 302 EKGGVLFVDDSKATTVAAMEAALRSF 327


>gi|77919798|ref|YP_357613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
 gi|122063252|sp|Q3A2G4|MURD_PELCD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77545881|gb|ABA89443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 25/150 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+    + +I +  G  +F  G             L TP        +  
Sbjct: 110 MVAITGTNGKSTTTCLMGEIMRCWGRRAFVGG------------NLGTP-------LIEA 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S     +  E SS  L+   +D  +   G   NL  DH+D +     Y  AK+RLFE 
Sbjct: 151 TRSTDWDWIVAEISSFQLEA--IDTFRPRYGMLLNLTADHLDRYAGMGEYVAAKLRLFEN 208

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +  E  A++ ADDA    V++   +  CR
Sbjct: 209 -MTAEDVAVVNADDAL---VVRSTTDLPCR 234


>gi|50086473|ref|YP_047983.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. ADP1]
 gi|59798249|sp|Q6F704|MURC_ACIAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49532449|emb|CAG70161.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ADP1]
          Length = 482

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 16/196 (8%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMK 258
           ++ +A   TN+  DH+D   T    F+     F E    LP    A++  DD   +E+M 
Sbjct: 188 LQPMAAIITNVDADHMD---TYGGSFDKLKDTFVEFIHRLPFYGLAVVCGDDHNVREIMP 244

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNA 315
           R    G   L+ G+  +   ++ V  +    Q   +V  KD + L      PG   + NA
Sbjct: 245 RF---GRPTLTYGFN-EDNDIRAVDVVQEGMQSHFTVLRKDREPLRLTVNQPGLHNILNA 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMI 372
           L A G+    G+  A +   LE    V  RF+  G    G    ++  DY H    +E  
Sbjct: 301 LAAIGVATDEGVSDAAIARALEGFSGVGRRFQVQGEFELGEGSVKLVDDYGHHPKEVEAT 360

Query: 373 LKNIRTITSGRIIVVF 388
           +K  R     R +V+ 
Sbjct: 361 IKAARQSHPDRRLVMM 376


>gi|291533201|emb|CBL06314.1| UDP-N-acetylmuramyl tripeptide synthase [Megamonas hypermegale
           ART12/1]
          Length = 104

 Score = 45.4 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I  ++ DSR ++   +FV I G + DG+ FIPQAI  GA AI+             + 
Sbjct: 21  KEIEFITHDSRRVRKNTLFVCICGTRVDGNKFIPQAIEAGACAIMTEK-------DVEVP 73

Query: 88  SNTPILVVDNTRKFLSLFASRLY 110
           ++  ++ V N R+ + L     Y
Sbjct: 74  ADITVIKVPNMREAMELAVPYFY 96


>gi|262402658|ref|ZP_06079219.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           RC586]
 gi|262351440|gb|EEZ00573.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           RC586]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 20/182 (10%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL  +GL I+  ID    L H +    + GR + +   SR   I +D A
Sbjct: 254 LPLPNAATALMALGCSGLEIS-DIDVVEGLRHAQ----LAGRMQLI---SREPIIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  +S   +++ ++     R+I +V G   D+D      +    ++L    +VT   P S
Sbjct: 306 HNPHSAHYLVEQLKQRYPQRVIHLVLGMLHDKD------IASTVMELN--PVVTHWYPAS 357

Query: 423 -EDPEKIRAE-IIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
              P    AE +   +P G I+  N + A   A+   + QDV+VVAG  H    ++ + +
Sbjct: 358 LSGPRAATAEQLCQYLPAGNIQYANPVAAFEAALTQASAQDVIVVAGSFHTVGEVLEHWQ 417

Query: 480 KK 481
           K+
Sbjct: 418 KR 419


>gi|159897146|ref|YP_001543393.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890185|gb|ABX03265.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 894

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 144/353 (40%), Gaps = 42/353 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + A+TGT+GK++ A     I + +G   + +G TST   +    R+          A   
Sbjct: 493 LAALTGTNGKTTTARMTAHILKMAG---YHVGMTSTDGIYIDGERVLRGDMTGPKSARMV 549

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235
           L    V    +E +  G+ +  L   ++  G+  N+  DH+           AK++ L  
Sbjct: 550 LRDPTVDAAVLETARGGILREGLGYDEVDVGAILNISADHLGLRGIDTLEEMAKVKSLII 609

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAH-----------NAGCRVLSVGYQGKFIHLKKVCA 284
           E++ ++  A++ ADD    +++ R             N   R   V   G+ I ++K   
Sbjct: 610 EVIKRDGWAVLNADDPLVAKLVARTRAKPFYFSFDPANPLVRE-QVQVGGRAIVVEKGV- 667

Query: 285 IHNKQQVTISVEGKDFDFLFP--LP------GEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             N   VT+  +G+    L+   +P       +F V NAL AA L  ++GI    + + L
Sbjct: 668 --NGDMVTLYDKGRHIPLLWTHLIPATLEGRAKFNVANALAAAALAYSLGISIENIRQGL 725

Query: 337 E----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
                  +  PGR      +    R+ +DY H   ++  ++  +R +   G+ I V    
Sbjct: 726 RTFTTSFYQTPGRLNVF--DEHPFRVILDYGHNPAAVSNLIDVVRQLPREGKAICVISVP 783

Query: 392 GDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           GDR +   R I   +   + D  I+ +D         +R      +PG+I +G
Sbjct: 784 GDRREVDAREIGRLLGAGVFDQIIIKEDT-------SLRGRKEGEMPGYIREG 829


>gi|45658619|ref|YP_002705.1| UDP-n-acetylmuramoylalanine--d-glutamate ligase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|60390496|sp|Q72NP4|MURD_LEPIC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|45601863|gb|AAS71342.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 463

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 69/356 (19%), Positives = 131/356 (36%), Gaps = 55/356 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT GKS+  S +  + + S                 +   L  P         + 
Sbjct: 104 IIGITGTDGKSTTTSLIAHLLKES------------FPDLKEGGNLGIP--------FTS 143

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              + ++   +E SS+ L+      + L    F NL  DH++ H+T + YF AK+++   
Sbjct: 144 FCKESISLAVLELSSYQLEDS--SPLHLDVSVFLNLASDHLERHKTMENYFQAKLKI--- 198

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVC---AIHNKQQVT 292
                      AD + S   +  +     R+L S+ YQ K +   K     A  ++  + 
Sbjct: 199 -----------ADLSNSNHTLIVSEKIKERILNSISYQCKLLSFGKTSDSNAFLDENSLK 247

Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I      +D   F LPG     N   +      IG     +   +     +P RF+  G 
Sbjct: 248 IKTSKFVYDISKFYLPGTHNRENLAASILAAEEIGGKPESIQTRIPLFRGLPHRFQIAG- 306

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             + G  +++ + ++N   M+          +  ++ G G  + +  +P+   +   +  
Sbjct: 307 -EKLGISFINDSKSTNLHSMLAGMATWKNIDQTCLILG-GRPKQEDLKPLYNFLIKGIGC 364

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + +  +           RA    GI   I EK   +E +    E+  K ++  V G
Sbjct: 365 VVLFGE----------ARATWESGIKNIIGEKLYCVENLNDTFEIFKKGNIFPVPG 410


>gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 513

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 136/374 (36%), Gaps = 75/374 (20%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-- 92
           SDSR ++ G +FVAI G + DGH F+ +A   GA   +V               + P+  
Sbjct: 39  SDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALVQHEV-----------DAPVAQ 87

Query: 93  LVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-----L 142
           +VV +T   L L      A+R     P  ++ +TG+ GK++    +  +    G     +
Sbjct: 88  IVVPDTVDALGLLAKANIAARRAAGTPFTLIGITGSVGKTTTKDLMAALLSTLGSTVAPV 147

Query: 143 SSF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            SF  +IG   T     +D R              +++  G +HV             + 
Sbjct: 148 GSFNNEIGLPLTALKVGRDTRF-------------FVAEMGASHVG-----------EIT 183

Query: 201 GIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            +  IA         +G  H+    + +    AK  + + L+P +  A++ ADDA+   +
Sbjct: 184 RLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVP-DGLAVLNADDAHVAAM 242

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------- 305
              A      V   G  G         A   K     + + +  D   P           
Sbjct: 243 APLAPQG--HVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGT 300

Query: 306 ------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G   V NAL AA +   +G+    + E L +   +      V T  RGG  +
Sbjct: 301 AHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSF 360

Query: 360 --VDYAHTSNSLEM 371
             +D +  +N   M
Sbjct: 361 TLIDDSFNANPDSM 374


>gi|52842820|ref|YP_096619.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|59798151|sp|Q5ZSA5|MURC_LEGPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52629931|gb|AAU28672.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 469

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 131/329 (39%), Gaps = 41/329 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+       ++ A  +  +H    +A+ GT G
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVIPRA----AMLAELMRFRHG---IAIAGTHG 125

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S V  +    GL  SF IG    ++S   + +L   S  ++ +A     S+L  +
Sbjct: 126 KTTTTSLVSSLLAEGGLDPSFVIG--GKLNSCGANAQLGK-SAYFVVEADESDASFLFLK 182

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V     +  +D +         G F  L    +++      Y  A + L +E + +
Sbjct: 183 PMMAVVTNIDADHMDTYE--------GDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEICR 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             PAI      Y  +  + AH         G   +F+ ++   A H  +Q+TI       
Sbjct: 235 ILPAIQRPTLTYGFK--EEAHYRAINWTQKGMLSEFVVVRP--APH--KQLTIQ------ 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRI 358
              F  PG   V NAL +  +   +G+D   ++  L+K   V  RF+ +G     +G  I
Sbjct: 283 ---FQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAI 339

Query: 359 YV-DYAHTSNSLEMILKNIRTITSGRIIV 386
            V DY H    +   +   R +   R +V
Sbjct: 340 IVDDYGHHPQEILSTIDAFRRVWPERRLV 368


>gi|29828747|ref|NP_823381.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces avermitilis
           MA-4680]
 gi|44888190|sp|Q82L07|MURC_STRAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29605851|dbj|BAC69916.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           avermitilis MA-4680]
          Length = 464

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 170/414 (41%), Gaps = 43/414 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R      SD++  +      A+      GH    + +A  A  +VVSSA    +     
Sbjct: 31  QRGAKVAGSDAKESETAEALRALGATVHIGH--AAEHLADDATCVVVSSAIRADNPELAR 88

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +   I VV  +     L    + G  P   +AV GT GK++  S +        LS+  
Sbjct: 89  AAELGIPVVHRSDALARL----MDGLRP---IAVAGTHGKTTTTSMLA-----VSLSTLG 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           + P     S+A    L  P         + L  +G   V+ EA       H+      I 
Sbjct: 137 LAP-----SYAIGGDLDAPGS-------NALHGEGDIFVA-EADESDRSFHKYAPDVAI- 182

Query: 207 GSFTNLGRDH-IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               N+  DH  +Y    + Y  A    F + + +    +I AD   ++E+ +R   +G 
Sbjct: 183 --VLNVELDHHANYASMDEIY--ASFETFVDRITEGGTLVIAADHEGARELTRRVTASGV 238

Query: 266 RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           RV++ G      + +  V A   K +V + ++G +  F   +PG    +NA+ A    +A
Sbjct: 239 RVVTYGESADADVCVLSVTAQGLKSEVEVLLDGTELTFTVSVPGRHYAHNAVAALAAGVA 298

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           +GI +A +   L     V  R +  G  + G ++   YAH    +   L+ +R      R
Sbjct: 299 LGIPAADLASALAAYTGVKRRLQLKGEEA-GVQVIDSYAHHPTEMTADLEAMRAAAGDAR 357

Query: 384 IIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433
           I+VVF        ++ GK   MG+ AL LAD ++V D  P  EDP   I +E+I
Sbjct: 358 ILVVFQPHLFSRTQELGKE--MGQ-ALALADASVVLDIYPAREDPIPGITSELI 408


>gi|254253334|ref|ZP_04946652.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
 gi|124895943|gb|EAY69823.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
          Length = 465

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 125/314 (39%), Gaps = 57/314 (18%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTR----KFLSLFASRLYGKHPENILAVT 121
           GA A+VVS+A         +RS+ P +L   + R    +   + A  +  K     +A+ 
Sbjct: 64  GANAVVVSTA---------VRSDNPEVLAARHQRVPIVQRAVMLAELMRLKQG---IAIA 111

Query: 122 GTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176
           GT GK++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+
Sbjct: 112 GTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASF 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+   V  V                        TN+  DH+D +    A        F +
Sbjct: 169 LNLYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LP    A++  DD   ++++        R  LS   Q   +  + + A   +   T+  
Sbjct: 206 RLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIR 262

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
           EG+     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G    
Sbjct: 263 EGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPT 322

Query: 353 SRGGRIYV--DYAH 364
           + GGR  +  DY H
Sbjct: 323 ADGGRYTLIDDYGH 336


>gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 451

 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 65/329 (19%), Positives = 134/329 (40%), Gaps = 41/329 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K +GH ++ +A+  GA A +   +Y       T   
Sbjct: 23  EIHGVCIDSKNMKEGNLFVPIIRMK-NGHEYVKEAMDNGAVASLWKKSY------GTPPK 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------G 141
             PI+ VD+T   L   A     +    ++ +TG++GK++V   +  I   +       G
Sbjct: 76  GIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKTKG 135

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + QIG   TI    +D         +L   +       + ++S  A            
Sbjct: 136 NFNSQIGLPLTILEMERDTE-------FLILEMGMSEKGQIRNLSRIAQPD--------- 179

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +G+ H++   +++    AK  + + L   +    +Y  D    E +   +
Sbjct: 180 ----VAVITMIGQSHLETLGSREEIAKAKFEIIDGL--NDDGLFLYNGD----EPLLSQN 229

Query: 262 NAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                + S  + GK+ + L       ++  V   +      +  PL G+  + NA+V   
Sbjct: 230 INMLSIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNNTKIQYDIPLHGKHNILNAIVGIA 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +     + +  + E L+++++   RF+F+
Sbjct: 290 VGQFYKVSTEKIQEALQQINITQMRFQFL 318


>gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
 gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
          Length = 843

 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 144/373 (38%), Gaps = 36/373 (9%)

Query: 27  ERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ER I  + +DSR + +    +F A+     DGH +IPQ    G  A  +     ++ +  
Sbjct: 29  ERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLYEHGVRAFFICEP--IEPYVE 86

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               +  I+ V  T + L   AS    ++   ++ +TG++GK+ V  F+  +   SG   
Sbjct: 87  RY-PDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKTVVKEFLYHLL--SGCYR 143

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               P S       +++L  P  I   +    L+   +    +      L   R+  I+ 
Sbjct: 144 IVRSPKSY------NSQLGVPLSILNMEEEHTLA---IFEAGISMPMEMLRLQRI--IRP 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  H +   +       K++LF +       A  +  DA S E+ +   N G
Sbjct: 193 TLGILTNIGAAHQENFVSLNQKIEEKLQLFVD-------ADHFVYDADSDEIQRGIDNLG 245

Query: 265 CRVLSVGYQ---GK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA---LV 317
               ++G+    GK + H+    +      +T+    +      P   +  + NA   L 
Sbjct: 246 LSDKAIGWSLTPGKAYYHVSYSHSGDGTTIITVQHADESSTVTIPFADQASIQNATHCLC 305

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL--K 374
             GL          VL     L  +  R E V     G R+  D Y +  NSL + L  +
Sbjct: 306 LIGLLPLTTAQRQAVLARFATLEAIEMRLE-VKEGQAGNRLINDAYNNDINSLRIALDFQ 364

Query: 375 NIRTITSGRIIVV 387
             RT TS +  V+
Sbjct: 365 KQRTATSHQQAVI 377


>gi|224282637|ref|ZP_03645959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 138/372 (37%), Gaps = 71/372 (19%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-- 92
           SDSR ++ G +FVAI G + DGH F+ +A   GA   +V               + P+  
Sbjct: 45  SDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALVQHEV-----------DAPVAQ 93

Query: 93  LVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-----L 142
           +VV +T   L L      A+R     P  ++ +TG+ GK++    +  +    G     +
Sbjct: 94  IVVPDTVDALGLLAKANIAARRAAGTPFTLIGITGSVGKTTTKDLMAALLSTLGSTVAPV 153

Query: 143 SSF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            SF  +IG   T     +D R              +++  G +HV         +  RL 
Sbjct: 154 GSFNNEIGLPLTALKVGRDTRF-------------FVAEMGASHVG--------EITRLT 192

Query: 201 GIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            I    IA     +G  H+    + +    AK  + + L+P +  A++ ADDA+   +  
Sbjct: 193 TIAPPDIA-VVLKVGCAHLGEFGSVERIAQAKSEIVQGLVP-DGLAVLNADDAHVAAMAP 250

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------------- 305
            A      V   G  G         A   K     + + +  D   P             
Sbjct: 251 LAPQG--HVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAH 308

Query: 306 ----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-- 359
               + G   V NAL AA +   +G+    + E L +   +      V T  RGG  +  
Sbjct: 309 VQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTL 368

Query: 360 VDYAHTSNSLEM 371
           +D +  +N   M
Sbjct: 369 IDDSFNANPDSM 380


>gi|119953594|ref|YP_945804.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia turicatae 91E135]
 gi|119862365|gb|AAX18133.1| UDP-N-acetylmuramate--alanine ligase [Borrelia turicatae 91E135]
          Length = 486

 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 62/431 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +  + ++ S AY   + S  + +    + + +  +F+   + + Y       + V G+ G
Sbjct: 89  KSYDILIYSPAYDKDNLSVLLEARELGIPILSYPEFIGKISKKYYS------IGVAGSHG 142

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ A+F+  +    GL    +   +++  F   + L   S I++A+   Y       H 
Sbjct: 143 KTTTAAFLGLLFNSLGLQP-NVILGASVKDFGDKSSLVGQSNIFIAETCEY--RNHFLHF 199

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S                       TN+  +H+D+ +  +A  N  ++     L K    I
Sbjct: 200 SPNMIV-----------------LTNIDYEHVDFFENYEAVENVFLQYINN-LKKNGILI 241

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I AD+    ++  R      +V SVG+           A    ++  +  E   FDFL  
Sbjct: 242 INADEVNLLKIKNRILRKDIKVFSVGFNS--------LADFKIERFELIDEFLKFDFLGG 293

Query: 306 LPGEFQ---VYNALVAAGLCIAIGI----DSALVLEHLEKLHV-------VPGRFEFVGT 351
           +    +   ++N L  A   +A+ +       LV    +++ +       +  R EF+  
Sbjct: 294 IDIRLRSPLMHNVLNFALSLLAVKLFFEEHKKLVWSFDDRIKMMAKEYMGIKRRMEFIM- 352

Query: 352 NSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             + G IY+ DYAH    +E  L  ++T   GR I++        + K  + G+    L+
Sbjct: 353 -EKDGVIYLDDYAHHPKEIESTLLGLKTFYKGRRIILDFMPHTFTRTK-VLFGEFVKVLS 410

Query: 411 DIAIVTDDN---PRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIE----MLNKQDV 461
           ++ ++   N      ED  P K+  E+   +    +     + +  A++    +L + D+
Sbjct: 411 NVDVLILHNIYLSVREDFNPNKLSKELFLALKDLNQNVYFFKEVVDAVDFIKGLLKRNDL 470

Query: 462 LVVAGKGHETV 472
            V  G G+  +
Sbjct: 471 FVTMGAGNNFI 481


>gi|303255991|ref|ZP_07342019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
 gi|302597050|gb|EFL64168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
          Length = 456

 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDISIF----EDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 70  KRV---------ANHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS 140
           +   +
Sbjct: 121 LLSTT 125


>gi|167564198|ref|ZP_02357114.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           EO147]
          Length = 464

 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 122/311 (39%), Gaps = 50/311 (16%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA A+VVS+A      +  A  R   PI+     R  +     RL     +  +A+ GT
Sbjct: 63  EGANAVVVSTAVRSDNPEVLAARRLGVPIV----PRAVMLAELMRL-----KQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    ++S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++         V+  G+     +  + V A   +   T+  EG
Sbjct: 208 PFYGSAVVCIDDPNVRQIVPLISRP---VVRYGFAPDAQVRAENVEARDGRMHFTVLREG 264

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G     G
Sbjct: 265 REPLPVVLNLPGLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEIPVAG 324

Query: 357 RIYV---DYAH 364
             Y    DY H
Sbjct: 325 GAYTLIDDYGH 335


>gi|165872273|ref|ZP_02216910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227813178|ref|YP_002813187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. CDC 684]
 gi|254754377|ref|ZP_05206412.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Vollum]
 gi|254766036|sp|C3L713|MURD_BACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|164711949|gb|EDR17489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227002721|gb|ACP12464.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V+         LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+    +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSKEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|119383341|ref|YP_914397.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
 gi|158512585|sp|A1AZK7|MURD_PARDP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119373108|gb|ABL68701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
          Length = 466

 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 102/260 (39%), Gaps = 37/260 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+  + +  I + +G  + QIG        + D       P +  +    
Sbjct: 122 VIAVTGSNGKSTTTALIHHILKETGRPT-QIGGNIGTGVLSLD-------PAHDGEV--- 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 171 --------VVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADDAYSKEV-----MKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHN 287
             P    A+I  D+   + +     M  A +   RV S     G+       K   A + 
Sbjct: 221 GGPDR--AVIGVDEVEGRYLAGQLGMGAADDRVIRVSSGQKLEGFGWSVFARKGYLAEYR 278

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +   S+   D   +  LPG     NA  A     A+GI    +         +P R +
Sbjct: 279 KGRQVASI---DLRGIQGLPGAHNHQNACAAYAAARAVGIAPREIERAFHSFQGLPHRSQ 335

Query: 348 FVGTNSRGGRIYVDYAHTSN 367
            V     GG  +V+ +  +N
Sbjct: 336 TVA--EIGGVAWVNDSKATN 353


>gi|302389258|ref|YP_003825079.1| FolC bifunctional protein [Thermosediminibacter oceani DSM 16646]
 gi|302199886|gb|ADL07456.1| FolC bifunctional protein [Thermosediminibacter oceani DSM 16646]
          Length = 434

 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 12/130 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPI 401
           PGR E +G N     + +D AH  + + ++   I     G R+I+V G   D+D  K   
Sbjct: 297 PGRLEIMGRNPD---VLIDGAHNPSGVGVLKSAILKYFPGKRVILVIGILKDKDYLK--- 350

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIRTAIEML 456
           M +  + +AD  + T  D+PR+ +P ++   I    +  +P    +    EAI TA E+ 
Sbjct: 351 MLEEIIPVADAVVATRPDSPRALEPNELEGSIKSLNLEKMPEIYVREEVEEAIDTAYEIA 410

Query: 457 NKQDVLVVAG 466
              DV+V AG
Sbjct: 411 GASDVIVFAG 420


>gi|126696889|ref|YP_001091775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543932|gb|ABO18174.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 476

 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 29/240 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + +TGT+GK++V   +  +   +GL           + FA +  + TP    L K   
Sbjct: 119 NWIGITGTNGKTTVTHLLSHMLCDTGL----------YAPFAGN--IGTP----LCKYAH 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + +  V  E SS+ ++      +K   G +T    DH++ H+T + YFN K  L E
Sbjct: 163 SKKHEKIDWVVAELSSYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSLLE 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +S   IY  D  +      + + G  + +   +   IH    C      Q  I  
Sbjct: 221 -----KSDFRIYNYDDKNLRNHYTSLSRGVWITTSFDKSNLIH----CDYWIDDQAYIVE 271

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            GK    L  F L G   + N L+       +G+    + + L     +P R E +  N+
Sbjct: 272 RGKKLFKLEHFSLKGMHNLQNLLLVIAAARKVGLSGKKIKDSLSNYKQLPHRMETIYKNN 331


>gi|113460505|ref|YP_718569.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
 gi|123131920|sp|Q0I1D2|MURC_HAES1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|112822548|gb|ABI24637.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
          Length = 476

 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 61/341 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  +VVSSA    +          I V+   +    +   R +G      +A+ GT G
Sbjct: 76  EGASVVVVSSAIKGDNIEVITAHEKRIPVIQRAQMLAEIMRFR-HG------IAIAGTHG 128

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT---STISSFAQDNRLTTPSPIYLAKA----LSYLS 178
           K++  + V  I  ++GL      PT     +   A  N     S   +A+A     S+L 
Sbjct: 129 KTTTTAMVAMIYAQAGLD-----PTFVNGGLVKSAGTNAYLGCSRYLIAEADESDASFLH 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q +  V        ++ +                  H D+ + +Q Y N     F   L
Sbjct: 184 LQPMVSVVTNIEPEHMETY------------------HGDFEEMKQTYVN-----FLRNL 220

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV------- 291
           P    +++ ADD     +M+ +   G +V++ G+  +  +      I + QQ        
Sbjct: 221 PFYGLSVMCADDPV---LMELSSQVGRQVVTYGFSDEADY-----RIEDYQQTGFQGHYT 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++  G+  D L  +PG+    NA  A  +    GI++  +L  L +      RF+ +G 
Sbjct: 273 VVAPNGERIDVLLNVPGKHNALNATAALTVAKEEGIENEAILTALAEFQGAGRRFDQLGQ 332

Query: 352 NSR-GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             R  G++ +  DY H    + + ++  R    + RI+++F
Sbjct: 333 FIRPNGKVMLVDDYGHHPTEVNVTIQAARQGWENKRIVMIF 373


>gi|282891539|ref|ZP_06300030.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498507|gb|EFB40835.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 449

 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 25/228 (10%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T + VE SS  LD   L   +L  G   N+  DH+D + + + Y  +KM++   +  KE 
Sbjct: 159 TVLVVELSSFQLDT--LQSRQLDMGVILNITPDHLDRYASMEDYALSKMKIKSCI--KEG 214

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   + A+      +A N  C +    +          C + + QQ       K+ D 
Sbjct: 215 APLYMEEKAFQNYGFLQA-NFPCHLYGYSHN---------CHLMSDQQHLFL--NKNIDS 262

Query: 303 LFPL----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + P+        ++ N + A GLC  +GID+ L  E +   +  P R E V    +    
Sbjct: 263 ILPIEYRETKSHRLENLMAAYGLCREMGIDATLFWEGVSTFNTPPHRIEKVAI-FKNVSY 321

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           Y D   T  +++ +++ I TI  G II++ G G D+     P +   A
Sbjct: 322 YNDSKGT--NIDAVMRAIETI-EGPIILIAG-GVDKGTDFSPWISAFA 365


>gi|269926713|ref|YP_003323336.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790373|gb|ACZ42514.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 474

 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 30/251 (11%)

Query: 104 LFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           L    L+ ++ P  I A+TG+ GKS+  S++  I +     +   G    +S+ +   ++
Sbjct: 107 LMEMNLFWRYCPAPITAITGSKGKSTTTSWLGHISKLWRPDTVVAG-NLRVSALSMLPQI 165

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +  +P+ L                 E SS  L+   + G        TN+  DH++ + +
Sbjct: 166 SEDTPVIL-----------------ELSSWQLEAFEVGGEAPHVSCITNISYDHLNRYPS 208

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +AY+N+K  ++      +     Y D   S+ V        C +  V +  +  H+K  
Sbjct: 209 FEAYYNSKRWIYRNQKTTDYAVFNYDDPIVSRFV------EDC-LAQVRWFSRSSHVKPG 261

Query: 283 CAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             I N     +   G     L      LPGE    NAL AA L  A+ I    ++E L  
Sbjct: 262 GYIDNDYIYLVDETGSTRKLLQVHELQLPGEHNRMNALAAAVLASAMNIPDEFIVEGLRT 321

Query: 339 LHVVPGRFEFV 349
              +P R E V
Sbjct: 322 FKGLPDRLELV 332


>gi|90580229|ref|ZP_01236036.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
 gi|90438531|gb|EAS63715.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
          Length = 487

 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 136/337 (40%), Gaps = 53/337 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  +V S+A S ++      +   I VV        L   R +G      +A+ GT G
Sbjct: 80  QGASVVVASTAISKENPELMAATELRIPVVRRAEMLAELMRYR-HG------IAIAGTHG 132

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  +   QI   +GL  +F  G    + S   + RL   S   +A+A     S+L  Q
Sbjct: 133 KTTTTALTTQIYSEAGLDPTFVNG--GLVKSAGTNARLGC-SRYLIAEADESDASFLHLQ 189

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEE 236
            +  V     +  +D +         G F  L +  ID+      Y  A M     +  E
Sbjct: 190 PMVCVVTNIEADHMDTY--------GGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVRE 241

Query: 237 LLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           LLP+   P + Y    ++++   R  N       +G QG F  L+K     +K  + I++
Sbjct: 242 LLPRVGRPMLTY---GFAEDADVRITN----YTQMGQQGHFTVLRK-----DKPALNITL 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     +PG+    NA  A  +    G+D   ++  L +      RF+ +G    G
Sbjct: 290 N---------IPGKHNALNATAAIAVATEEGVDDDAIMRALIEFEGTGRRFDHLGEFETG 340

Query: 356 -GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            G + +  DY H  + +++ ++  R      R++++F
Sbjct: 341 NGNVMLVDDYGHHPSEVDVTIQAARAGWADKRLVMIF 377


>gi|269468117|gb|EEZ79827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured SUP05
           cluster bacterium]
          Length = 434

 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 123/300 (41%), Gaps = 58/300 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GKS+V   +  +             T++    A    +  P       AL  
Sbjct: 103 VIGITGSNGKSTVTQLLGDMI------------TNSDKKVAVGGNIGKP-------ALDC 143

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-- 234
           L  Q + +  +E SS+ LD    + +KL+ G   N+  DH+D + +   Y ++K+ L+  
Sbjct: 144 LDDQ-IDYYVLELSSYQLD--YTNQLKLLTGVVLNITPDHLDRYDSFDDYTDSKLSLYRY 200

Query: 235 ---------EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
                    E ++PK++ A       +  ++ KRA + G    +V   G        C +
Sbjct: 201 CQDLVVNLDEVIVPKKNNA-----KHFGIDMPKRADDFG----TVTCHGS-------CYL 244

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                V +SV          L GE  V N L A  L   IG+   L+ + ++    +  R
Sbjct: 245 IKGDDVVMSVSE------MQLIGEHNVANMLAALALGDQIGLSVELMAQSIKNFKGLEHR 298

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E+V    + G  Y + +  +NS+  I + ++ +      +V   GG   +    +M K+
Sbjct: 299 LEWVA--KKQGVDYYNDSKATNSISTI-QALKALIDKHENIVLIAGGIAKEEDYSVMFKL 355


>gi|327312708|ref|YP_004328145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
 gi|326946102|gb|AEA21987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
          Length = 437

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 73/368 (19%), Positives = 144/368 (39%), Gaps = 39/368 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           V++DSR    G IF+A+ G   DG+ F   A+ +G   A+V    Y+  D       +  
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKAD-------DGR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+        A     + P  ++ +TGT+GK++    +  +        F +  T 
Sbjct: 69  YILVDDALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSE----KFNVHHTE 124

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L       +  + + AS  G  +  +  ++   G  TN
Sbjct: 125 A----NYNNDVGVPRTL-----LGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H+    + +     K  L++ L  K    +++ +++ +  +   A     R+++ G
Sbjct: 176 VGRAHLQGFGSFEGVKRTKGELYDFL--KAHDGLLFLNESNADLMEMAAQREFSRIITYG 233

Query: 272 ------YQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  QG  +     CA   K   Q ++       ++    L G + + N L A  + 
Sbjct: 234 QDETADVQGNVVS----CAPFLKFTWQALSHQPSSGTYEVQTHLIGSYNLDNMLAAIAIG 289

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           +  G+    V   LE  + +P       T +   R+ VD Y    +S+   ++N R +  
Sbjct: 290 LHFGVTPQQVCHALE--NYIPHNNRSQLTETAHNRLIVDAYNANPSSMAAAIENFRLMQV 347

Query: 382 GRIIVVFG 389
              + + G
Sbjct: 348 KDKMAILG 355


>gi|54298603|ref|YP_124972.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148358651|ref|YP_001249858.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|296108259|ref|YP_003619960.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|59798137|sp|Q5X1S6|MURC_LEGPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224700|sp|A5IAW2|MURC_LEGPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53752388|emb|CAH13820.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148280424|gb|ABQ54512.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|295650161|gb|ADG26008.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|307611493|emb|CBX01164.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           130b]
          Length = 469

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 131/329 (39%), Gaps = 41/329 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+       ++ A  +  +H    +A+ GT G
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVIPRA----AMLAELMRFRHG---IAIAGTHG 125

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S V  +    GL  SF IG    ++S   + +L   S  ++ +A     S+L  +
Sbjct: 126 KTTTTSLVSSLLAEGGLDPSFVIG--GKLNSCGANAQLGK-SAYFVVEADESDASFLFLK 182

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V     +  +D +         G F  L    +++      Y  A + L +E + +
Sbjct: 183 PMMAVVTNIDADHMDTYE--------GDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEICR 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             PAI      Y  +  + AH         G   +F+ ++   A H  +Q+TI       
Sbjct: 235 ILPAIQRPTLTYGFK--EEAHYRAINWTQKGMLSEFVVVRP--APH--KQLTIQ------ 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRI 358
              F  PG   V NAL +  +   +G+D   ++  L+K   V  RF+ +G     +G  I
Sbjct: 283 ---FQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAI 339

Query: 359 YV-DYAHTSNSLEMILKNIRTITSGRIIV 386
            V DY H    +   +   R +   R +V
Sbjct: 340 IVDDYGHHPQEILSTIDAFRRVWPERRLV 368


>gi|298245025|ref|ZP_06968831.1| FolC bifunctional protein [Ktedonobacter racemifer DSM 44963]
 gi|297552506|gb|EFH86371.1| FolC bifunctional protein [Ktedonobacter racemifer DSM 44963]
          Length = 472

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 20/191 (10%)

Query: 287 NKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLC-----IAIGIDSALVLEHLEKLH 340
            +Q+ ++    +++  L   L GE Q+ NA VA           +  D   +   L  + 
Sbjct: 262 ERQRFSVWTPQREYTGLELALAGEHQLENAAVALATLEQLREQGLTWDEDALRRGLASVQ 321

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
             P R E VG   R   I VD AH ++S++ +++ +R T    R++ V     D+DQ   
Sbjct: 322 W-PARIEVVG---RQPTIVVDGAHNTDSMQKLVQALRTTFAPRRLLFVLSTSKDKDQ--- 374

Query: 400 PIMGKI-ALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEM 455
              G I  L  AD+ ++T+  NPR    E + A      PG     +    EA+  A+ +
Sbjct: 375 --EGMIQTLADADVVVLTNMHNPRVTPLETLSALFSRHAPGVELHSEPTSEEALDLAVRL 432

Query: 456 LNKQDVLVVAG 466
            +K D++   G
Sbjct: 433 ADKDDLICATG 443


>gi|226355404|ref|YP_002785144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deinococcus
           deserti VCD115]
          Length = 429

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 29/117 (24%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTGT+GK S    + Q+ +  GL+             AQ+     P  + +      
Sbjct: 98  MVGVTGTAGKGSTTVLIAQLLRECGLN-------------AQEGGNIDPPLLDV------ 138

Query: 177 LSSQGVTHVSV---EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                V H  V   E SS  L+  R+ G++L     TNLG DH+D H+T +AY +AK
Sbjct: 139 -----VDHAEVAVVELSSFQLE--RVPGLRLPVAVITNLGVDHLDRHRTVEAYHDAK 188


>gi|160946328|ref|ZP_02093537.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
 gi|158447444|gb|EDP24439.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
          Length = 441

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 98/241 (40%), Gaps = 17/241 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L  H ++  K    S  N+  DHID+H +   Y   K+++F+  + K    I+
Sbjct: 159 IEVSSFQL--HNIENFKPYIASIGNITPDHIDWHGSFDNYIEDKLKIFKN-MDKNGNLIL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD    ++     N     +S+  +    +L +    HN +++      KD   L   
Sbjct: 216 NIDDEILGKI--NVENTNVTKISLNNKNADFYLSENNFYHNDKKL---FSMKDLKIL--- 267

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+    N L++  +C   GI    ++   +    V  R EFV     G + Y D   T 
Sbjct: 268 -GKHNAQNVLISLAICYNYGIIMDTIIFACKNFGGVEHRIEFV-RELNGIKFYNDSKGT- 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +++  +K I  +    I++V   G D++    P+       +  + +V D   +  D  
Sbjct: 325 -NVDSTIKAIEALEKPIILIV--GGYDKNVDFNPLFESFNGKVKTLILVGDTKYKFYDSA 381

Query: 427 K 427
           K
Sbjct: 382 K 382


>gi|89897956|ref|YP_515066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           felis Fe/C-56]
 gi|122063241|sp|Q255W7|MURD_CHLFF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89331328|dbj|BAE80921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           felis Fe/C-56]
          Length = 419

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 31/158 (19%)

Query: 83  SATIRSNTPILVVDNTRKFLSL-------FASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           S  I+++ P LV++  R+ + +       F S  + ++P   L +TG++GK++   F+  
Sbjct: 66  SPGIKTSHP-LVIEAKRRDIPIVTDVQLAFQSPEFYQYPS--LGITGSTGKTTTVLFLVH 122

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G+S+F +G                  PI     L  +  +GV    VE SS  L 
Sbjct: 123 LLHSLGISAFAMGNIGF--------------PI-----LQAMYQKGVR--VVEISSFQLT 161

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +       L   +  N+  +H+DYHQT  AY  AKM +
Sbjct: 162 EQEQKIPVLSGAAILNISENHLDYHQTLHAYSEAKMNI 199


>gi|291528773|emb|CBK94359.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale M104/1]
          Length = 459

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 125/331 (37%), Gaps = 38/331 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGT 123
           G  A  ++S   L  ++A I  + P            L  + L G+  +N    +AV GT
Sbjct: 60  GQSADNITSGIDLVVYTAAIHESNPEFAAAKAAGIPMLTRAELLGQIMDNYDYSIAVAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GK++  S + +I     L + Q  PT ++    S    N     S  ++++A  Y +S 
Sbjct: 120 HGKTTTTSMISEI-----LLAAQTDPTISVGGILSSIHGNLRVGDSEYFISEACEYTNSF 174

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                        L+      I L      N+  +H+D+ +      ++        L  
Sbjct: 175 -------------LNFRPRYSIIL------NIEAEHLDFFKDINDIRHSFREYASNTLAG 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD- 299
            +  I    D Y + V         ++++ G+  K+    +     +K   + +   +  
Sbjct: 216 GATIINGEIDRYEEIVAGLPQ----KIITYGFDSKYDFYPENITYDDKACASFTAMRQGS 271

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             FD    +PG   V NAL A  L   +G+D+  +L  L+K      RF++ G    G  
Sbjct: 272 PLFDVKLSVPGAHNVSNALAAIALSTTLGLDTESILTGLDKFGGADRRFQYKG-KVNGVT 330

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           I  DYAH    +   L   +     R+++ F
Sbjct: 331 IIDDYAHHPTEIRATLTAAQKYPHDRLVLCF 361


>gi|163815474|ref|ZP_02206847.1| hypothetical protein COPEUT_01639 [Coprococcus eutactus ATCC 27759]
 gi|158449111|gb|EDP26106.1| hypothetical protein COPEUT_01639 [Coprococcus eutactus ATCC 27759]
          Length = 448

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 145/363 (39%), Gaps = 83/363 (22%)

Query: 114 PEN---ILAVTGTSGKSSVASFVQQICQRSG--------------LSSFQIGPT------ 150
           P+N   ++ + GT+GK S+ +F+  I + +G              L  FQI  T      
Sbjct: 35  PQNKVKVVHIAGTNGKGSICAFLDGILENAGYVVGRYISPTIFTYLERFQINGTYMDEDT 94

Query: 151 ---------STISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                    +   + A D  NR T+      A A  Y   + V  + +E    GL    L
Sbjct: 95  FAVYLERVKNVADAMAADGLNRPTS-FETETAIAFCYFMDKNVDILLLETGMGGL----L 149

Query: 200 DGIKLIAGSF----TNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYA--DDAY 252
           D   +          ++  DH  +   T Q  ++ K+     ++ K+ P + Y   +D  
Sbjct: 150 DATNVCKSPLCTIIASISMDHTQFLGDTLQKIYSQKLG----IMKKDVPCVAYPVNEDLM 205

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQ 311
            + + K   NA     + G+    ++   +  +H+    +  + +G  +D    +PG +Q
Sbjct: 206 PQWIEKCDENA-----TTGFS-VMVNPSDIGILHSGLDGSSYIYKGNTYD--LAVPGIYQ 257

Query: 312 VYNALVAAGLCIAIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRG--------GRIY 359
           +YN++VA        +++A +L+     L+ +++  G      T  +G          +Y
Sbjct: 258 IYNSVVA--------VETAYMLQKEGYDLKNVNISDG---LAATRWKGRFQKLMDVPPVY 306

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VD AH       + KNI T   GR + ++ CG  RD+  R ++  +         V  DN
Sbjct: 307 VDGAHNPGGWRALRKNIDTYFPGRDL-IYICGVFRDKDYRQMLEIMMPGAGSFIAVQPDN 365

Query: 420 PRS 422
           PR+
Sbjct: 366 PRA 368


>gi|315271261|gb|ACO45390.2| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Deinococcus deserti VCD115]
          Length = 432

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 29/117 (24%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTGT+GK S    + Q+ +  GL+             AQ+     P  + +      
Sbjct: 101 MVGVTGTAGKGSTTVLIAQLLRECGLN-------------AQEGGNIDPPLLDV------ 141

Query: 177 LSSQGVTHVSV---EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                V H  V   E SS  L+  R+ G++L     TNLG DH+D H+T +AY +AK
Sbjct: 142 -----VDHAEVAVVELSSFQLE--RVPGLRLPVAVITNLGVDHLDRHRTVEAYHDAK 191


>gi|304383924|ref|ZP_07366381.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
 gi|304335002|gb|EFM01275.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
          Length = 443

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 127/320 (39%), Gaps = 53/320 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I +         P   Y+      
Sbjct: 104 MVCITGSNGKTTTTSLIYHIFREAG---YDVGLAGNIGNSLALQVAEDPHAFYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y    Q Y NAKMR+ +
Sbjct: 155 ----------IELSSFQLDD--MFDFRANIAILLNITPDHLDRYDHCMQNYVNAKMRILQ 202

Query: 236 ELLPKESPAIIYADDA--------YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
               ++S  I + DD         Y  + M+   +      S+GY  +  +  +     N
Sbjct: 203 NQTEEDS-FIFWNDDPIIKRELQKYDIKAMQYPFSELKENGSIGYIEEGRYTLEEPTPFN 261

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRF 346
            +Q  +S           L G   +YN+L AAG+  +I GI   ++ + L     V  R 
Sbjct: 262 MEQEELS-----------LTGRHNIYNSL-AAGIAGSIAGIKKDVIRKSLSDFPGVEHRL 309

Query: 347 EFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           E V     GG  Y++ +  +N  +    L ++RT T    I++ G G D+     PI   
Sbjct: 310 EKV--VKVGGVQYINDSKATNVDACWYALDSMRTPT----ILIIG-GKDKGNDYEPIKAL 362

Query: 405 IALDLADIAIVTDDNPRSED 424
           +      +  +  DN +  D
Sbjct: 363 VKEKCVGLVYLGADNSKLHD 382


>gi|224282639|ref|ZP_03645961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313139797|ref|ZP_07801990.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132307|gb|EFR49924.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 476

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 27/155 (17%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +    GL +  +G                     + KA
Sbjct: 100 PAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVG--------------------NIGKA 139

Query: 174 LSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +S+ +       + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K +
Sbjct: 140 VSHAAVDPDNDALCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSK 197

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCR 266
           +F  +       +  ADD     +   AH A GCR
Sbjct: 198 VFRNV---RRALVFNADDRRVSALASAAHTAEGCR 229


>gi|311063964|ref|YP_003970689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
           [Bifidobacterium bifidum PRL2010]
 gi|310866283|gb|ADP35652.1| MurD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 476

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 27/155 (17%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +    GL +  +G                     + KA
Sbjct: 100 PAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVG--------------------NIGKA 139

Query: 174 LSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +S+ +       + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K +
Sbjct: 140 VSHAAVDPDNDALCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSK 197

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCR 266
           +F  +       +  ADD     +   AH A GCR
Sbjct: 198 VFRNV---RRALVFNADDRRVSALASAAHTAEGCR 229


>gi|261855072|ref|YP_003262355.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
 gi|261835541|gb|ACX95308.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
          Length = 491

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 111/280 (39%), Gaps = 36/280 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++  S +  I   +G       PT  I        L++ S   L +   YL
Sbjct: 128 LAVAGTHGKTTTTSLLAAILAEAGWD-----PTYVIGG----KLLSSSSNARLGRG-EYL 177

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++       +AS   L  H            TN+  DH+   +T    F   +  F E 
Sbjct: 178 VAEADES---DASFLHLQPH--------VAIVTNIDADHL---ETYDGNFERLVDHFIEF 223

Query: 238 L---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
           L   P    A++ ADD  +  +  R    G +VL+ G  Q   +    V +     +  +
Sbjct: 224 LHNLPFYGLAVLCADDPVAAGITARV---GRQVLTYGIDQPADVRATDVYSDGFGSRFVV 280

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++  +  FD    +PG   V NAL A  +   +G+  A + + L     V  R E  G  
Sbjct: 281 NLPNQTQFDCRLAMPGRHNVLNALAAITVAQDLGVPVAAIQQALTSFQGVGRRLERRGAL 340

Query: 353 SRGGR---IYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
           +  G+   +  DY H    +E  L+ +R      R++V+F
Sbjct: 341 AIKGKKLPLIDDYGHHPREVEATLQAVRAAWPDVRLVVIF 380


>gi|163794525|ref|ZP_02188496.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium BAL199]
 gi|159180249|gb|EDP64772.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium BAL199]
          Length = 472

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 22/154 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+  + +  I     L+S  + P     +  +              AL +
Sbjct: 113 LVAITGTNGKSTTTALIGHI-----LASANV-PVEVGGNLGR-------------PALEF 153

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   V +E SS+ L+      +      + N+  DHID H +   Y  AK R+F  
Sbjct: 154 ADPGPNGVVVLELSSYQLEL--TPSLAPTVAVWLNITPDHIDRHGSLAGYVAAKRRIFAH 211

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
             P+   A+I  DDA+S++V  R    G R+  +
Sbjct: 212 QTPR-GLAVIGNDDAHSRDVADRLRRDGRRIFDL 244


>gi|315185898|gb|EFU19663.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 459

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 104/288 (36%), Gaps = 46/288 (15%)

Query: 94  VVDNTRKFLSLFASRLYGKHPEN------------ILAVTGTSGKSSVASFVQQICQRSG 141
            V  T +FLSL       +H E             ILAVTG+ GKS+ AS +  I   + 
Sbjct: 85  AVPRTSRFLSL------ARHVETDISLFLKACRSPILAVTGSKGKSTTASALHHILS-AA 137

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               ++G   T S       L+  +P+ L  +   L   G                R+  
Sbjct: 138 FPGARLGGNITTSPLTFLRELSEETPVVLELSSWQLGDLG---------------GRISF 182

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
              +A + TN+  DH + + + +AY   K  +       + P+  +   A+       A 
Sbjct: 183 TPQVA-ALTNIYPDHQNAYASMEAYVEDKFWITA----TQDPSQTFLYPAFDPWGRWMAA 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVA 318
           N     L   ++ +        A   +Q+      GK+   L     +PG     N L+A
Sbjct: 238 NTPATALPF-FEERPTSPPPRAAFLTEQEGLFLDHGKEIPLLPERLLVPGAHNRLNLLLA 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHT 365
             +    G D AL+   L     +P R E V    +GG   Y D A T
Sbjct: 297 GAMAYTFGTDPALIRTRLSSFPGIPHRLELV--REKGGVAFYNDSAAT 342


>gi|187932746|ref|YP_001884683.1| cyanophycin synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|187720899|gb|ACD22120.1| cyanophycin synthetase [Clostridium botulinum B str. Eklund 17B]
          Length = 872

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 162/396 (40%), Gaps = 45/396 (11%)

Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +YG++P+NI  ++VTGT+GK++    +  +  + G   + +G TST   +  +  +    
Sbjct: 470 MYGENPKNIPIVSVTGTNGKTTTTRLINHVLSQMG---YSVGMTSTEGIYVNNKCIHKGD 526

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH----QT 222
                 A + L ++ V    +E +  GL +  L          TN+  DH+         
Sbjct: 527 DSGFNSAKTILLNRDVDIAVLETARGGLIRKGLAYDIADVSVITNITNDHLGLDGINSME 586

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK------- 275
           + ++  A   L  E + +    I+ ADD +SK ++ R      ++    Y          
Sbjct: 587 ELSFVKA---LVGEAVKENGFTILNADDEWSKTIINRIK--ANKIFFSKYADNELIQKNI 641

Query: 276 -------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                  FI    +  ++N ++ +I     D    +    ++ + N + A G  + + ID
Sbjct: 642 IDGGISVFIENDNIIVVNNHKKYSIC-SINDVPLSYNGLLKYNLENIMAACGALVGMNID 700

Query: 329 SALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-II 385
             ++ + +     +   GRF       R  +I +DY H     + +L ++  I   + +I
Sbjct: 701 YCMISKGIMSFNLNNNNGRFNIYEIEDR--KIILDYGHNIEGYKAVLSSLDKIKKDKDLI 758

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-- 443
            V G  GDR       +G+I  ++ D  I+ +D  R    E   A ++    G + K   
Sbjct: 759 GVIGIPGDRCDDIAIEIGEICSEMLDKIIIKEDKDRRGRDEGEIASLLKN--GVLRKNKN 816

Query: 444 -------NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
                  + I+A+  A+ +  K D +VV  +  E++
Sbjct: 817 AKIHVCLDEIKALEKALMISKKGDTIVVFFEDLESI 852


>gi|163754139|ref|ZP_02161262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
 gi|161326353|gb|EDP97679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 149/368 (40%), Gaps = 43/368 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K   +++DSR I    IF A+ G+  +G+ +   A+ +GA       AY++ D    + 
Sbjct: 10  QKYPNITTDSRKITPNCIFFALKGDNFNGNKYAKDALEKGA-------AYAIVDEKEYVT 62

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S   ILV D       L     Y +   N  I+++TG++GK++    +  +  +      
Sbjct: 63  SEQTILVNDALESLQKLAN---YHRKQLNIPIISLTGSNGKTTTKELINAVLSK------ 113

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI- 202
           +   T+T  +   +N +  P        L+ LS    T + +    ++H  +   L  I 
Sbjct: 114 KFNTTATKGNL--NNHIGVP--------LTLLSMNSDTEIGIVEMGANHKREIAFLSSIA 163

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G  TN G+ H++     +     K  L++ L  K S   I+ +   +K+V +R  +
Sbjct: 164 EPDYGYITNFGKAHLEGFGGIEGVIIGKSELYDYL--KASDKFIFVNGDDTKQV-ERTQD 220

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A   V    + G   +   +  +     V+ +V+GK       L G +   N   A  + 
Sbjct: 221 ANTYV----FGGSDTYDLSIEFLTANPMVSCAVDGKKIQ--SQLIGSYNFSNIAAAIAIG 274

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
               ++S  + E +E       R + +  N+   +I +D Y     S++  L N   +T 
Sbjct: 275 TYFKVNSDDIKEAIEAYIPSNNRSQILTKNTN--KIILDAYNANPTSMKAALDNFSDLTD 332

Query: 382 GRIIVVFG 389
              I   G
Sbjct: 333 TSKIAFLG 340


>gi|298252074|ref|ZP_06975877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546666|gb|EFH80534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 476

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 166/405 (40%), Gaps = 49/405 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  +   +FVAI G + DGH FIP     G    + ++       S  + +    LVV
Sbjct: 35  DSRQYERDDLFVAITGARVDGHRFIPAIARAGGAGALCTT------LSEDVPAGFLQLVV 88

Query: 96  DNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STI 153
            +  K L   A     + PE + + +TG+SGK++    +  +  R       + PT  T 
Sbjct: 89  PDVVKALQATARVRVQRQPETLKIGITGSSGKTTTKEAIAAVLGR-------VAPTLKTY 141

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR--LDGIKLIAGS-F 209
           +S+  +N L  P        L+ L  +     +V E  +  + + R   + I     S  
Sbjct: 142 ASY--NNELGYP--------LTLLRLEAEHRYAVLEMGAEWVGELRGLCETIACPDWSVI 191

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +G  H+ +  +      AK  L + L P E  A +  DD   + + ++      RV+ 
Sbjct: 192 TTVGAAHLKHFGSLANVAIAKSELVQVLSP-EGIAFLNYDDPVVRAMKEKTR---ARVIY 247

Query: 270 VGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G QG     + +H+++   + ++   T+ +E +D      LPG   +  AL AA +  A
Sbjct: 248 YG-QGDGAAVRALHVEERGLLGSR--FTLRIEDEDVPVQLRLPGTHGITTALAAAAVGSA 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTIT-- 380
             I    + E LE L  V GR    G     G   +D  Y    +S+  + + ++  T  
Sbjct: 305 ANIPLESIRESLEALSPVQGRGVVKGGAGPNGSTLIDDTYNAIRHSIIAMAQAMQATTIA 364

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLA---DIAIVTDDNPR 421
             G+  VV G   ++ +  R       L LA   D  +V  DN R
Sbjct: 365 PQGKRWVVLGELFEQGEHTRDEHLASGLGLAGKVDYLVVLGDNAR 409


>gi|189502568|ref|YP_001958285.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498009|gb|ACE06556.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 433

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +VS DSR   A  IF A+ G   DG++F  QA+A+GA       AY++ D     + +  
Sbjct: 20  QVSFDSRKDVANTIFFALKGACCDGNIFASQALAKGA-------AYAVIDNPRYYQEDER 72

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            L+V++T + L   A     +    I+A+TG++GK++    +  +
Sbjct: 73  YLLVNDTLETLQQLAKLHRSQLNIPIIAITGSNGKTTTKELIYAV 117


>gi|149202203|ref|ZP_01879176.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. TM1035]
 gi|149144301|gb|EDM32332.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. TM1035]
          Length = 467

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 43/281 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  + V ++  + G+    +     I ++  + R+               
Sbjct: 114 IAVAGTHGKTTTTTLVAELLVKGGIDPTVVN-GGIIHAYGSNARM--------------- 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY----HQTQQAYFNAKMRL 233
             QG   V VEA       +RL     I    TN+  +H+++     + +Q +++     
Sbjct: 158 -GQGEWMV-VEADESDGTFNRLPATIAI---VTNIDPEHMEHWGNIERLRQGFYD----- 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF------IHLKKVCAIHN 287
           F   +P    A+   D    + ++ R  +   RV++ G+  +       +H +K  A  +
Sbjct: 208 FVSNIPFYGLAVCCTDHPEVQALVGRITDR--RVMTYGFNAQADVRAVNLHYEKGVAHFD 265

Query: 288 KQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              V +  EG+  +    P+PG+  V NAL A  +   +G+    +   L     V  RF
Sbjct: 266 ---VALQAEGRMIEGCTLPMPGDHNVSNALSAVAVARHLGMKGDEIRTALASFGGVNRRF 322

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             VG    G  I  DY H    +  +L+  R  T+GR+I V
Sbjct: 323 TRVG-EVNGVTIIDDYGHHPVEIAAVLRAARQATTGRVIAV 362


>gi|225166182|ref|ZP_03727899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutaceae
           bacterium TAV2]
 gi|224799576|gb|EEG18088.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutaceae
           bacterium TAV2]
          Length = 437

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 30/171 (17%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPENILAVTGTSGKSSVA 130
           SA++L  FS       P L        + L    FAS  +     +++A+TGT+GK+++ 
Sbjct: 57  SAFNLVIFSPGFPPGHPWLAAARAAGCVCLGEVDFASLFWRG---SLVAITGTNGKTTLT 113

Query: 131 SFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            F+    +  G    ++  IG  S +S    +     P  I + + +S   ++ + H+  
Sbjct: 114 EFLTHALRHIGRDVTATGNIG--SPLSHLVAERGGGGPESIAVCE-ISSFQAETLNHLRA 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +++                  +TN   DH++ H T + YF+AK RLFE  +
Sbjct: 171 DSAI-----------------WTNFAEDHLERHPTIEEYFHAKWRLFERCI 204


>gi|150025456|ref|YP_001296282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149771997|emb|CAL43473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 427

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 32/224 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I+   +F+A+ G+  D + F  +AI++GA  +++       D       +  I
Sbjct: 16  VSTDTRKIENNSLFIALKGDNFDANTFAEEAISKGALFVIID------DKKHHTNKDKMI 69

Query: 93  LVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           LV+D+  T + L+ +  +  G  P  I+A+TG++GK++    +  +  +   +   IG  
Sbjct: 70  LVLDSLQTLQELAKYHRQQLG-LP--IIALTGSNGKTTTKELINVVLSKKYNAKATIGNL 126

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206
                   +N +  P  +     LS+     +  V + A+     Q  ++ +  IA    
Sbjct: 127 --------NNHIGVPLTL-----LSFDEDTDIGIVEMGANH----QKEIELLCSIAEPNF 169

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           G  TN G+ H++          AK  L+  L   +  A +  DD
Sbjct: 170 GYITNFGKAHLEGFGGIDGVIKAKSELYNYLEENKQTAFVNLDD 213


>gi|117619646|ref|YP_858325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561053|gb|ABK38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 427

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 109/278 (39%), Gaps = 39/278 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++   +GL   ++G    I + A +                 
Sbjct: 99  VIAITGSNGKSTVTTLVGEMIAEAGL---KVGVGGNIGTPALE----------------- 138

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +    +E SS  L+      ++  A    NL  DH+D +Q    Y  AKM + + 
Sbjct: 139 LLKQPMDLCVLELSSFQLETTH--SLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQH 196

Query: 237 LLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   +I  DDA +  +V +   + G      G           C +  +  +T+  
Sbjct: 197 ----SQHILINRDDAQTLPDVGQVWQSFGLDCNGYGR----------CELDGRHWLTLHG 242

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E         + G     NAL A  LC A+GI     L  L +   +P R  FV     G
Sbjct: 243 EPLLAVDEMKIVGAHNQANALAAMALCDAVGIPREPQLRVLRRFEGLPHRARFV-REVNG 301

Query: 356 GRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGG 392
            R   D   T+    +  +  +R    GR++++ G  G
Sbjct: 302 VRWINDSKATNVGATLAAVAGVRESVKGRLLLLAGGQG 339


>gi|167647625|ref|YP_001685288.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter sp. K31]
 gi|189028981|sp|B0T827|MURC_CAUSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167350055|gb|ABZ72790.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter sp. K31]
          Length = 472

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 33/196 (16%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR 266
           TN+  +H+D+  T    F+A  + F++ +   P    A +  D    + +  R  N   R
Sbjct: 186 TNIDAEHLDHWGT----FDAVKKGFQDFIENIPFYGFAAVCTDHPEVQALTARIENR--R 239

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------------FPLPGEFQ 311
           +++ G   +        A      + +  EG  FD L                P+ G   
Sbjct: 240 LVTYGTNPQ--------AEVRVSNIQMGPEGAQFDILVSPLSGDLVLYEGLKMPMAGHHN 291

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA  A  +   +G+D+  +   L     V  RF   G  + G RI  DY H    +  
Sbjct: 292 VLNATAAVAVARELGVDADAIRAGLAGFGGVKRRFTTTGV-ANGVRIVDDYGHHPVEIAA 350

Query: 372 ILKNIRTITSGRIIVV 387
           +LK  R +++G++I V
Sbjct: 351 VLKAARAVSTGKVIAV 366


>gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
 gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
          Length = 479

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 149/375 (39%), Gaps = 37/375 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A     F+A   
Sbjct: 26  RDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVAAALNAGAALAVVEKAQR-DKFAA--- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P+LVVD+  + L         +    ++AVTG+ GK+S    ++ +           
Sbjct: 82  -DAPLLVVDDVLEGLRRLGIAARSRLSAKVIAVTGSVGKTSTKEGLRSVLGAQ------- 133

Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGIKLI 205
           GPT ++++SF  +N      P+ LA+        GV +   E   +H  +   L  +K++
Sbjct: 134 GPTHASVASF--NNHWGV--PLTLAR-----CPAGVRYAVFEIGMNHAGEIEPL--VKMV 182

Query: 206 ---AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  T +   H+++    +   +AK  +F  L P    A++  D      +   A  
Sbjct: 183 RPHVAIITTVEPVHLEFFSGVEGIADAKSEIFSGLEPG-GIALLNRDTPMFDRLSANALR 241

Query: 263 AGC-RVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           A   R+++ G            A+H +   V  S+ G D  +   +PG     N+L    
Sbjct: 242 ANVGRIVTFGTDPAADARLLDVALHADCSAVHASILGHDVTYKIGMPGRHMALNSLAVLA 301

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEM-----ILK 374
               +G D AL    + ++    GR          G    +D ++ +N   M     +L 
Sbjct: 302 AAELVGADLALAALAMSQVQPAVGRGARKALPIGSGEATLIDESYNANPASMAAALGVLG 361

Query: 375 NIRTITSGRIIVVFG 389
                  GR I V G
Sbjct: 362 RAEIGAQGRRIAVLG 376


>gi|325109905|ref|YP_004270973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970173|gb|ADY60951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
          Length = 473

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 132/317 (41%), Gaps = 38/317 (11%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S DSR +  G +F A+ G   DGH F+  A  +GA A VVS   +        R   P +
Sbjct: 39  SIDSRTLNPGDVFWALPGRNCDGHQFVTAAFEKGAAAAVVSQPVT--------REAGPCI 90

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V++    L+  +          ++ +TG+ GK++    +  +  ++         T T 
Sbjct: 91  QVEDVAAALAEASFEHRNSLEALMIGLTGSVGKTTTRQMLHAVLSKA--------YTGTA 142

Query: 154 SSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           S    +NRL  P S + +++A  Y        + + AS+ G      + ++      T +
Sbjct: 143 SRENFNNRLGVPLSLLGISEADEY------AVIEMGASAQGEIGALGELVQPEIALLTQI 196

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H+D   + +   + K  LF+  LP+   A++         + +R H+   RVL+VG 
Sbjct: 197 APAHLDGFGSIEGVISGKSELFDN-LPESGLAVLPEHLYVMPAIRRRIHS---RVLTVG- 251

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI----GID 328
           QG    +       +  Q+    +G  F      PG+    +   +AGLC+AI    G+ 
Sbjct: 252 QGPSADICLNNIRLDSGQLKFECDGDSFR--MNAPGK----HFASSAGLCVAIARELGLT 305

Query: 329 SALVLEHLEKLHVVPGR 345
           +A +   LE    V GR
Sbjct: 306 TAQIQAGLENFSPVEGR 322


>gi|209550176|ref|YP_002282093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535932|gb|ACI55867.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 470

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 25/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G  +   G   T         LT   P    KA  Y 
Sbjct: 117 IAITGTNGKSTTTALIAHILKSAGYDTQLGGNIGTAV-------LTLDPP----KAGRYY 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L
Sbjct: 166 V--------VECSSYQIDLAPT--LNPSAGILLNLTPDHLDRHGTMQHYADVK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +     AI+  DD++S  +  R   A  +V+ +
Sbjct: 212 VAGSDVAIVGVDDSHSALIADRVERADVKVVRI 244


>gi|319408823|emb|CBI82480.1| UDP-N-acetylmuramate--alanine ligase [Bartonella schoenbuchensis
           R1]
          Length = 468

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+DY+ +  A   A  R F E +P    A++  D    + +  R  +       
Sbjct: 179 TNIDSEHLDYYGSFDAVREA-FRQFVENMPFYGFAVMCLDHPEVQTLASRIDDRWVVTYG 237

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R L++  +G+  H   +       +     E +  + + P+ G+  + NA  A
Sbjct: 238 ANPQADVRFLNLSMEGQKTHFDVLIRSRKTNE-----ETELRNLVLPMSGQHNISNATAA 292

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +GI +  + + L +   V  RF   G+   G  I+ DY H    ++ +L   R 
Sbjct: 293 IAIAHELGISNESIRKGLAEFCGVKRRFTQTGSWC-GVEIFDDYGHHPVEIKAVLSAARE 351

Query: 379 ITSGRIIVV 387
              GR+I +
Sbjct: 352 SAKGRVIAI 360


>gi|126741300|ref|ZP_01756978.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
 gi|126717618|gb|EBA14342.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
          Length = 471

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 10/125 (8%)

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  R  ++ Y+G   H      +H + +  + +EG       P+PG+  V NAL A  + 
Sbjct: 248 ADVRASNLTYKGGVAHFD----VHLQAEDRV-IEG----CTLPMPGDHNVSNALSAVAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G++S+ + E L     V  RF  VG    G  I  DY H    +  +LK  R    G
Sbjct: 299 RHLGMNSSEIREALAAFGGVNRRFTKVG-EVDGVTIIDDYGHHPVEIAAVLKAARQACEG 357

Query: 383 RIIVV 387
           R+I V
Sbjct: 358 RVIAV 362


>gi|15639332|ref|NP_218781.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025574|ref|YP_001933346.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema pallidum subsp.
           pallidum SS14]
 gi|6093444|sp|O83361|MURC_TREPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620436|sp|B2S2T8|MURC_TREPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3322616|gb|AAC65326.1| UDP-N-acetylmuramate--alanine ligase (murC) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018149|gb|ACD70767.1| UDP-N-acetylmuramate--alanine ligase [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059731|gb|ADD72466.1| UDP-N-acetylmuramate--alanine ligase [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 481

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 20/193 (10%)

Query: 209 FTNLGRDHIDYHQTQQ----AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            T++  DH DY+ + +    AYF+     + + LP+        DD   +EV++ A  + 
Sbjct: 189 LTSVEHDHQDYYSSYEDILAAYFH-----YIDRLPQFGELFYCVDDQGVREVVQLAFFSR 243

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             ++ V Y G+        +IH  Q  +++ S+ G   +F   LPGE  V NA  A  L 
Sbjct: 244 PDLVYVPY-GERAWGDYGVSIHGVQDRKISFSLRGFAGEFYVALPGEHSVLNATGALALA 302

Query: 323 IAIGIDS--ALVLEHLEKLHVVPGRFEFVGTNS------RGGRIYVDYAHTSNSLEMILK 374
           +++       + +EHL  L  V   F+     S      RG     DY H   +++  L+
Sbjct: 303 LSLVKKQYGEVTVEHLTALRKVLALFQGCRRRSEVLGEVRGILFMDDYGHHPTAIKKTLR 362

Query: 375 NIRTITSGRIIVV 387
            ++T    R IVV
Sbjct: 363 GLKTFFPERRIVV 375


>gi|266625297|ref|ZP_06118232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
 gi|288862800|gb|EFC95098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
          Length = 111

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS DSR ++   +FV +VG K D H FI QA   GA A   S    ++D       N
Sbjct: 26  LDHVSIDSRTMKGNDLFVPLVGEKVDAHRFIGQAFDNGAAATFTSEHDVMED-------N 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            P + V +T++ L    +    +    ++ +TG
Sbjct: 79  RPWIRVSDTKRALQALGAWYRRRLKLPLVGITG 111


>gi|302871367|ref|YP_003840003.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574226|gb|ADL42017.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 21/194 (10%)

Query: 186 SVEASSHG------LDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +VE SS        +   +L+ IK      G   N+  DH++ H T + Y  AKMR+FE 
Sbjct: 152 TVETSSENTIFVLEISSFQLETIKYFKPKVGCILNITPDHLNRHATMENYVKAKMRIFEN 211

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISV 295
            + +    ++  D+  +++++  A     R + V  + K  H K +  +  NK   T   
Sbjct: 212 -IDEAGYTVLNYDNGITRDLIGLAK----RNVIVFSKNK-NHFKNMVFVEENKIYFTFGG 265

Query: 296 EGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + ++    D +F +PGE  + NAL A    +  G+    + + L+    V  R EFV T 
Sbjct: 266 KTQEVMKKDEIF-IPGEHNLENALAAIACTLPFGVAKDTIKDVLKTFKGVEHRIEFV-TE 323

Query: 353 SRGGRIYVDYAHTS 366
             G + Y D   T+
Sbjct: 324 INGIKFYNDSKGTN 337


>gi|291546674|emb|CBL19782.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. SR1/5]
          Length = 459

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 126/348 (36%), Gaps = 44/348 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A I  + P       +    L  + L G+   N    +A++GT GK++  S V  I  
Sbjct: 75  YTAAIHPDNPEFACAKEKGLPMLTRAELLGQIMRNYDTPIAISGTHGKTTTTSMVSHI-- 132

Query: 139 RSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSS--QGVTHVSVEASSHG 193
              L      PT ++         N     S  ++ +A  Y +S       +SV      
Sbjct: 133 ---LLEGDCDPTISVGGILPAIHGNIRVGNSETFITEACEYTNSFLSFFPKISV------ 183

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                            N+  DH+D+ +          R F ELLP +   II AD    
Sbjct: 184 ---------------ILNMDADHLDFFKDIDD-IRHSFRKFAELLPADGTLIINADTPEY 227

Query: 254 KEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
           + + +      C VL+ G  +   +         +     ++   GK    +   +PG  
Sbjct: 228 ETITREL---PCNVLTYGLEHDADYTAADITWDKYGHPSFSVLFRGKKIGSYYLRVPGIH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL A  +   + + + ++++ L        RF++ G    G  I  DYAH    +E
Sbjct: 285 NVSNALAAIAVGRLLDLPNDVIVKGLGSFTGTDRRFQYKG-EIGGITIIDDYAHHPTEIE 343

Query: 371 MILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTD 417
             L   +     ++  VF      R +   P   K AL LAD  ++ D
Sbjct: 344 ATLHAAKNYPHQKVWCVFQPHTYTRTKALLPEFAK-ALTLADHVVLAD 390


>gi|225849381|ref|YP_002729545.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644549|gb|ACN99599.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 454

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 115/292 (39%), Gaps = 57/292 (19%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------- 259
           S  N+  +H+ +++  +   NA +  F   +P     +   DD   K ++ R        
Sbjct: 178 SINNIDLEHLGFYKDLEDIKNAFVE-FANKVPFYGFVVANIDDENVKSIIPRIERKIIKF 236

Query: 260 --AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             + +A  R    GY  K ++ +    I++  ++ +SV           PG   VYNAL 
Sbjct: 237 GLSKDADIR----GYDLKLVNGRYKFKINDFGEIHLSV-----------PGIHNVYNALA 281

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              +C  +G+   ++ E LE       RFE     S G  +  DYAH    ++  L   R
Sbjct: 282 TISICNELGVPFCVIKESLENFKNAKRRFEI--KYSDGILVIDDYAHHPTEIKATLSAAR 339

Query: 378 TITS-GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +    RII VF     R      +  +   + D+ DI I+TD     E+P       I 
Sbjct: 340 DMYGQNRIISVFQP--HRYSRVYSLFDEFVESFDIPDIVIITDIYSAGENP-------IE 390

Query: 435 GIPG---------------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           G+ G               +++  N  E++  +I  +   DV++  G G+ T
Sbjct: 391 GVSGQLLADKIRQRRNNVFYVKDVNEAESLLKSI--IKNGDVVLTMGAGNIT 440


>gi|94984441|ref|YP_603805.1| FolC bifunctional protein [Deinococcus geothermalis DSM 11300]
 gi|94554722|gb|ABF44636.1| FolC bifunctional protein [Deinococcus geothermalis DSM 11300]
          Length = 414

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 15/109 (13%)

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           E   K+H  PGR E +    RGGR+ +D AH  +    +++ +R +   ++ ++FG   D
Sbjct: 268 EGARKVHW-PGRLEVL--PWRGGRVLLDGAHNPDGARALVEALRGLGVEQLPIIFGAAAD 324

Query: 394 RDQGK-----RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +D  +     RP+  ++ L  A +      +PR+ DP  + A    G+P
Sbjct: 325 KDIAEVAAALRPLASEVILTRAVL------SPRAADPTTL-APYFAGLP 366


>gi|54295451|ref|YP_127866.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
 gi|59798133|sp|Q5WTI7|MURC_LEGPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53755283|emb|CAH16777.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
          Length = 469

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 131/329 (39%), Gaps = 41/329 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+       ++ A  +  +H    +A+ GT G
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVIPRA----AMLAELMRFRHG---IAIAGTHG 125

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S V  +    GL  SF IG    ++S   + +L   S  ++ +A     S+L  +
Sbjct: 126 KTTTTSLVSSLLAEGGLDPSFVIG--GKLNSCGANAQLGK-SAYFVVEADESDASFLFLK 182

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V     +  +D +         G F  L    +++      Y  A + L +E + +
Sbjct: 183 PMMAVVTNIDADHMDTYE--------GDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEICR 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             PAI      Y  +  + AH         G   +F+ ++   A H  +Q+TI       
Sbjct: 235 ILPAIQRPTLTYGFK--EEAHYRAINWTQKGMLSEFVVVRP--APH--KQLTIQ------ 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRI 358
              F  PG   V NAL +  +   +G+D   ++  L+K   V  RF+ +G     +G  I
Sbjct: 283 ---FQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAI 339

Query: 359 YV-DYAHTSNSLEMILKNIRTITSGRIIV 386
            V DY H    +   +   R +   R +V
Sbjct: 340 IVDDYGHHPQEILSTIDAFRRVWPERRLV 368


>gi|301165435|emb|CBW25006.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Bacteriovorax marinus SJ]
          Length = 457

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 143/365 (39%), Gaps = 44/365 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+ GT GK++  SF+  I Q S     +  PT  I                + K L   
Sbjct: 110 LAIAGTHGKTTTTSFLATILQES-----KYDPTYIIGG--------------IVKNLDGH 150

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G     V  +        L  +  I    TN+  DH+D H   +A   +    F   
Sbjct: 151 AKVGKGEFLVAEADESDGSFLL--LNPIMSVVTNIDNDHMD-HYGSEANLLSSFTEFINK 207

Query: 238 LPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +P      + A D    A +KEV K     G       ++ + I  +    I++      
Sbjct: 208 VPFYGLTALNAHDERLMALTKEVKKPWVTFGVET-EADFEARDIRYENNITIYDLYH--- 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S E K  +    +PG+  + N+L A  L   +G+    + + + K   V  RF+ +    
Sbjct: 264 SGE-KKIEIRITIPGKHNILNSLGAIALAFNMGVPFEEIAKSIIKFDGVGRRFQTL-VAK 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLA 410
               +  DYAH    +++ LK ++ T  + +I+VVF     R    R          + A
Sbjct: 322 DNFEVIDDYAHHPTEIDVTLKAMKETRPNKKIVVVFEP--HRYSRTRDCWDSFLHCFNSA 379

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D   ++   P SE P      +++ A+I    P  ++K + IE I + I+   +++V LV
Sbjct: 380 DTVYISPIYPASEKPIPGIEADRLIADINKLHPDLVKKLDSIENIDSIIDNYKEENVTLV 439

Query: 464 VAGKG 468
             G G
Sbjct: 440 TLGAG 444


>gi|254446835|ref|ZP_05060310.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
 gi|198256260|gb|EDY80569.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
          Length = 435

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 10/113 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR I++G +F A+     DGH F+  A   GA   +V        F   I    P 
Sbjct: 3   LTNDSRKIESGELFAALKTAARDGHDFLESARRSGAAGAIVDR------FQEEI--ELPQ 54

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           LVVD   + L   A         N++ +TG+ GK++    +   C  SG ++ 
Sbjct: 55  LVVDEVGEALLALAGGYRATWQANVVGITGSCGKTTCKEVLA--CLLSGFATL 105


>gi|77361421|ref|YP_340996.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|122063255|sp|Q3IG02|MURD_PSEHT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76876332|emb|CAI87554.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 446

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 113/282 (40%), Gaps = 44/282 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+V +  QQ+   +G  +   G   T                 L    S 
Sbjct: 113 VVAVTGSNGKSTVVTLAQQVLLAAGYKAALGGNIGT---------------AVLDLLQSD 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           LS+  V    +E SS  LD      ++ I+ +  N+  DH+D + + QAY ++K+ ++  
Sbjct: 158 LSNNDVDVYVLELSSFQLDTTT--SLQPISATVLNVSEDHLDRYASYQAYIDSKLSIYNN 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                +  I  ADD       +  H+     LS G  QG +       ++   QQ T  +
Sbjct: 216 ----AALVITNADD-------EATHSKAKSQLSFGANQGDY-------SLGEYQQQTYFM 257

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +     FL      + G+    NAL    L     I  A       + + +  R +FV  
Sbjct: 258 QANKA-FLPVTSLAVVGKHNYLNALAVMALLSPFNISKAQYSTAFSQFNGLAHRCQFVA- 315

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             R G  Y + +  +N    I       T+G+ ++V   GGD
Sbjct: 316 -ERAGVKYFNDSKATNVGATIAAIDSLATNGQQLIVIA-GGD 355


>gi|209696054|ref|YP_002263984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Aliivibrio
           salmonicida LFI1238]
 gi|226711878|sp|B6ELH7|MURD_ALISL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|208010007|emb|CAQ80330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aliivibrio
           salmonicida LFI1238]
          Length = 442

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V     ++   +G+ +   G       FA  + L   + +Y+ +  S+
Sbjct: 110 VIAITGSNGKSTVTDLTGEMANAAGVKTAVGGNIG----FAALDLLEQDADLYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                     +E +S          +KL A +F NL  DH+D +Q  + Y  AK+R+F+
Sbjct: 166 ---------QLETTS---------SLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRVFD 206


>gi|114566875|ref|YP_754029.1| cyanophycin synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337810|gb|ABI68658.1| UDP-N-acetylmuramyl tripeptide synthase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 887

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 126/295 (42%), Gaps = 31/295 (10%)

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++VA  ++ +   +G    ++G T +  ++     +          A S L ++
Sbjct: 486 TGTNGKTTVARLIRHVLSLAGQ---KVGMTCSSGTYIGKECIAEGDNTGPLSAHSILYNR 542

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQAYFNAKMRLFEEL 237
            V    +E +  G+ +  L       G  TN+  DH+   D +  +   F  K  + E +
Sbjct: 543 DVEVAVLETARGGIIRRGLGYDLADVGVITNISGDHLGMDDINTLEDMAF-VKSLVVEAI 601

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFI--HLKK-VCAIHNKQQVT 292
            P    A++ ADD  ++ ++++A    C   + S+      +  H+K+   A+  ++ + 
Sbjct: 602 KPN-GYAVLNADDGMTEHIVRKAS---CNPVLFSLNRDNMLVEDHIKQDGMAVVIEEDLI 657

Query: 293 ISVEGKDFDFLFPL---PGEFQ------VYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +  + K  D +  +   P  F       + N+L A     A G+   ++   L      P
Sbjct: 658 VIYQNKIRDEIMTINEIPITFNGKAICNIENSLAAVASLSAFGLAKNVIRLGLMSFTSDP 717

Query: 344 ----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
               GRF      S   R+ +DY H  ++ + +++ I  + + R++ + G  GDR
Sbjct: 718 TANEGRFNLFDMGSF--RVLLDYGHNYSAYQSVMQFINNMNAARLVGIIGVPGDR 770


>gi|293604151|ref|ZP_06686559.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
 gi|292817376|gb|EFF76449.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
          Length = 871

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 153/376 (40%), Gaps = 50/376 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQD 159
           LF     G+ P  I+ VTGT+GK+ VA  V ++     +R+GL+  +            D
Sbjct: 472 LFPEGDAGRIP--IVGVTGTNGKTVVARLVSRLLHLSGKRTGLACSE--------GLYLD 521

Query: 160 NRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI 217
            RL         A     L ++ V    +E  S  +    L   +   G  TN+   DH+
Sbjct: 522 RRLVQKGDRADFASGTRLLMNRNVDAAVIENDSGVILGQGLAYDRCQVGVVTNIDDADHL 581

Query: 218 ---DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
              D ++T++  FN      + +LP  + A++ A D    E+ +    A   V+  G   
Sbjct: 582 GDFDINETER-MFNVFRTQVDVVLPTGA-AVLNARDPRVVEMAELCDGA---VIFFGIDP 636

Query: 275 KF----IHLKKVC-AIHNKQQVTISVEGKDFDFL-----FPLPG----EFQVYNALVAAG 320
                  HL++   A+  +    I  +G   + L      PL       FQV N L A G
Sbjct: 637 ALPAIAAHLQQDGRAVFVRDGGIILAQGVREERLADVAAIPLTHGGRVAFQVENVLAAVG 696

Query: 321 LCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              A+ I   L+   +E   +     P +F     N  G  + VD  H +++L  ++  I
Sbjct: 697 AAWALDIPVELIRAGIETFDIDQADAPWQFTLFERN--GSTVVVDDVHNASALRPLIAAI 754

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPE-KIRAEIIH 434
               + R   V+  G DR        G++  D  D  ++ DD   +S+ PE + RA +  
Sbjct: 755 DQFPAARRAAVYSAGADRRDADLIEQGRLLGDAFDRVVLYDDKTVQSKRPEGQARALLRQ 814

Query: 435 GIPGFIEKGNRIEAIR 450
           G    + +G+R++ I+
Sbjct: 815 G----LSQGSRVKDIQ 826


>gi|83721549|ref|YP_441667.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|167618582|ref|ZP_02387213.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           Bt4]
 gi|257137836|ref|ZP_05586098.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|109892697|sp|Q2SZI2|MURC_BURTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83655374|gb|ABC39437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia thailandensis
           E264]
          Length = 465

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 124/312 (39%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYG-KHPENILAVTGT 123
           +GA A+VVS+A         +RS+ P +L     R  +   A  L      +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    ++S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++         V+  G+     +  + V A   +   T+  EG
Sbjct: 208 PFYGSAVVCIDDPNVRQIVPLISKP---VVRYGFAADAQVRAENVEARDGRMHFTVLREG 264

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
           ++    +  LPG   V NAL A  +   + +    + + L + + V  RF+  G   + G
Sbjct: 265 REPLPVVLNLPGLHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEMPAAG 324

Query: 356 GRIYV---DYAH 364
           G  Y    DY H
Sbjct: 325 GGAYTLIDDYGH 336


>gi|87124205|ref|ZP_01080054.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
 gi|86167777|gb|EAQ69035.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
          Length = 460

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 135/333 (40%), Gaps = 34/333 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ +  V +DSR + AG  FV +VG + DGH F+ +A A+ A+A VV++A+S       +
Sbjct: 24  DQPLGPVCTDSRQLVAGAFFVPLVGERFDGHRFLVEAAARPAQAAVVATAWSDPVPPGLL 83

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                   V++T +   + A     + P  ++AVTG++GK++    +     R+ L+   
Sbjct: 84  HWR-----VNDTLEAYQMLARAHRRQLPCPVVAVTGSAGKTTTRELI-----RAALA--- 130

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             P   + + + +N      P+ +   L      G   + +     G         +   
Sbjct: 131 --PLGVVQASSGNNNNDVGVPLTV---LGVGPEHGAAVIEMGMRGPGEIARLSRCAEPQI 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI    +++A   AK  +   L   +   +I A D   +  +  A     R
Sbjct: 186 AVITNIGTAHIGRLGSREAIAAAKCEITASLA-ADGLVVIPAGDPLLEAAL--AQCWAGR 242

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLFPLPGEFQVYNALVAAGLC 322
           V  V  +G  +   +  A  ++  V     G    +      PL G     N L+A  + 
Sbjct: 243 VRRVALEGDALESVRPEAPVDRLGVVDVCAGVLRLEGLAIRLPLEGRHNARNLLLALTVA 302

Query: 323 IAIGIDSALVLEHLEKLHV-VPG----RFEFVG 350
             +G+     L  L+ L V VPG    R E  G
Sbjct: 303 QELGVP----LAQLQDLKVAVPGGRNRRIELAG 331


>gi|323497896|ref|ZP_08102905.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
 gi|323316941|gb|EGA69943.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
          Length = 486

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 114/288 (39%), Gaps = 52/288 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+PK S  +I   +A+DA  +    R           G QGKF         
Sbjct: 234 IDDPVVRELVPKISRQVITYGFAEDADVRIDNYRQE---------GQQGKF--------- 275

Query: 286 HNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                 T+  +GK D D    +PG     NA  A  +     I    +L  +        
Sbjct: 276 ------TVIRQGKADLDITLNIPGRHNALNASAAIAVATEDDIADEAILNAMAGTQGTGR 329

Query: 345 RFEFVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           RF+ +G    G G + +  DY H    +++ ++  R      R++++F
Sbjct: 330 RFDHLGEFDTGNGAVMLVDDYGHHPTEVDVTIQAARNGWEDKRLVMIF 377


>gi|297581030|ref|ZP_06942955.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
 gi|297534856|gb|EFH73692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
          Length = 444

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 104 ELFAWHVDTPVIAITGSNGKSTVTDLSGMLANAAGVKA------------AVGGNIGVP- 150

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 151 ------ALDLISPDVDLYV-LELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDY 201

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 202 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 240

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 241 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDA 300

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 301 LKSYTGLTHRCQVVADN 317


>gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
 gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 153/373 (41%), Gaps = 48/373 (12%)

Query: 26  RERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY------ 77
           R   I+ + +DSR +      +F A+   + DG  +I    A+G    VVS         
Sbjct: 20  RPAAIDWLLTDSRSLSFPEETLFFALPTKRNDGTRYIRDLYARGVRNFVVSEERLNEVGI 79

Query: 78  ---SLQDF-------SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               ++D        +A ++    +LVV N  K L   A +   +    ++ +TG++GK+
Sbjct: 80  GEPKVEDAVRQETVDTAAMQPAFNLLVVPNPLKALQKLAEQHRDRFQIPVIGITGSNGKT 139

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            V  ++ Q+          + P   I  S  + ++++  P  ++    +S  +   +   
Sbjct: 140 IVKEWLHQL----------LSPERMITRSPRSYNSQIGVPLSVW---QMSEQTELAILEA 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPA 244
            +  S  G  +   + IK   G  TN+G  H      Q+ +F+ + +  E+L L K    
Sbjct: 187 GI--SEPGEMRALQNIIKPTIGILTNIGGAH------QENFFSLQEKCMEKLALFKNCDV 238

Query: 245 IIY-ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +IY  DD +    + ++  A   +  S     + +++ KV    +   ++      D  F
Sbjct: 239 VIYNGDDEFINNCVGKSMLAAREIAWSRKDMERPLYISKVEKQEDSTVISYRYLDMDNTF 298

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P   +  + N+L     C+ + + +  + E + KL  V  R E      + G + ++ 
Sbjct: 299 TLPFIDDASIENSLNCLAACLYLMLPAEQITERMAKLEPVAMRLEV--KEGKNGCLLIND 356

Query: 363 AHTSN--SLEMIL 373
           ++ S+  SL++ L
Sbjct: 357 SYNSDLGSLDIAL 369


>gi|227509379|ref|ZP_03939428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227191091|gb|EEI71158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 39/255 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           I+ VTG++GK++  + + +I   +R    ++  G    I   A +  L + +   +   L
Sbjct: 114 IIGVTGSNGKTTTVTMITKILNEERKKGHAYAAG---NIGVSATETALKSTADDTIVMEL 170

Query: 175 SYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           S     G+     HV+V                      TN+  +H+DYH+T++ Y NAK
Sbjct: 171 SSFMLLGIKKLHPHVAV---------------------LTNIFSNHLDYHKTRKNYVNAK 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           MR+     P +   + +  D + +++ KR+              +  + K     +N + 
Sbjct: 210 MRITMNQTPDDFFVVNFDSDEW-RQLSKRSKAQIVPFARTSEIDRGAYEKNGKLYYNDEF 268

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  + + K       +PG+  V NAL A      +G  +  +   LE    V  R +FV 
Sbjct: 269 IMNADDIK-------VPGQQNVENALAAIATAKILGKSNLAITNVLETFTGVRHRVQFV- 320

Query: 351 TNSRGGRIYVDYAHT 365
             + G + Y D   T
Sbjct: 321 LEADGRKFYNDSKAT 335


>gi|226357091|ref|YP_002786831.1| tetrahydrofolate synthase (folylpolyglutamate synthase)
           [Deinococcus deserti VCD115]
 gi|226319081|gb|ACO47077.1| putative tetrahydrofolate synthase (folylpolyglutamate synthase)
           [Deinococcus deserti VCD115]
          Length = 435

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-----QG 397
           PGR E +      GR+ +D AH     E +++ +R +  G++ +VFG   D+D       
Sbjct: 295 PGRMEVLTVGE--GRVLLDGAHNPAGAEAVVRALRDLGVGKLPLVFGAAADKDLSGVAAA 352

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             P+  ++ L  A +      +PRS DP  +
Sbjct: 353 LEPVASQVVLTRARL------SPRSADPAAL 377


>gi|169831597|ref|YP_001717579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638441|gb|ACA59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 470

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V++D+R +  G +FVA+ G++ DGH F  QA+ +GA  ++VS   S+    A ++ 
Sbjct: 25  RVKRVTTDTRVLAGGELFVALRGSRFDGHDFAGQAVDRGACGLLVSREVSVPSGVAVLKV 84

Query: 89  NTPI-----LVVDNTRK 100
              +     L +DN R+
Sbjct: 85  ADTLTALQALALDNRRR 101


>gi|171462988|ref|YP_001797101.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|229620049|sp|B1XT10|MURC_POLNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171192526|gb|ACB43487.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 478

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 130/341 (38%), Gaps = 62/341 (18%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126
           EA+V+S+A         +  N P ++     K   +  + + G+    +  +A+ GT GK
Sbjct: 66  EAVVISTA---------VAGNNPEVLAARAAKIPVIQRAVMLGELMRLKQGIAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ AS V  +    GL  +F IG    ++S   + RL                      +
Sbjct: 117 TTTASLVASVLAEGGLDPTFVIG--GKLNSAGANARLGRGD-----------------FI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VEA     D+     ++L       TN+  DH+D +Q   A        F + +P    
Sbjct: 158 VVEA-----DESDASFLQLFPAMEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGV 212

Query: 244 AIIYADDAYSKEVMK----------RAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQ 290
           A++  DDA  ++++            + +A  R  +V   G  +H    ++    H  + 
Sbjct: 213 AVLCIDDANVRDIIPFVSQPVLRYGLSDDADIRAANVRADGTRMHFTVDRRTVRRHGNKP 272

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +++          LPG   V NAL A G+   +G+    + + L +   V  RF+  G
Sbjct: 273 GPLNIT-------LNLPGLHNVRNALAAIGIATELGVGDEAITKALSEFGGVGRRFQRYG 325

Query: 351 T---NSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVV 387
               +S G    + DY H    +   L   R     R +V+
Sbjct: 326 EIPLDSGGSFTLIDDYGHHPVEMSATLAAARGAYPDRRLVL 366


>gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1]
 gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1]
          Length = 844

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+ +  S DSR   AG +F+A+   + DGH +I  A+A GA  ++     +  D      
Sbjct: 21  RQFSGFSYDSRLTAAGELFLALRTPRGDGHAYIADALAAGATGVICEKPPA--DL----- 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           SNT ++V D+     + +A+    +    ++ VTG+ GK+S    +  +   SGL+
Sbjct: 74  SNTTMIVTDDPALLAARWAAARLRQVAPRVIGVTGSVGKTSATRAIAAVL--SGLA 127


>gi|262380536|ref|ZP_06073690.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
 gi|262297982|gb|EEY85897.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
          Length = 482

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 124/331 (37%), Gaps = 42/331 (12%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA  +VVS+A   +  +  A I    P++      +   +    +  +H    +AV GT
Sbjct: 80  KGASVLVVSTAIDPENPEVKAAIEQRIPVV------RRAEMLGELMRYRHG---IAVAGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  +    G+      PT  I      NR    + +  ++           
Sbjct: 131 HGKTTTTSLLTCMLAEEGMD-----PTYVIGGLL--NRTGVNAALGASR----------- 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++  EA         L+ +  I    TN+  DH+D +             F   LP    
Sbjct: 173 YIVAEADESDASFLHLEPMAAIV---TNIDADHMDTYGGSFDVLKDTFIQFLHKLPFYGL 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DDA  +E+M R       +L+ G+      ++ V    +  +   +V  KD + L
Sbjct: 230 AVVCGDDANIREIMPRIARP---LLTYGFNPDN-DIRAVDVEQDGMRSHFTVLRKDREPL 285

Query: 304 ---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGR 357
                 PG   V NAL A G+    G+  A +   LE    V  RF+     G      +
Sbjct: 286 RLTINQPGLHNVLNALAAIGVATDEGVSDAAIGRALEGFSGVGRRFQVQGEFGLEQGTVK 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  DY H    +E  +K  R     R +V+ 
Sbjct: 346 LVDDYGHHPKEVEATIKAARQSHPDRRLVMM 376


>gi|123441030|ref|YP_001005019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087991|emb|CAL10779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 444

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 101/238 (42%), Gaps = 36/238 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ + +G   +Q+G    I   A          + L K L+ 
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGVPA----------LNLLKQLT- 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L       V +E SS  L+      +   A +  N+  DH D Y    Q Y  AK+R++E
Sbjct: 153 LQKHENQLVVLELSSFQLET--TSSLHASAATILNVTEDHTDRYPFGLQQYRAAKLRVYE 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  V      A  R +S G      HL       NKQQ  I +
Sbjct: 211 ----NAKVCVVNADDALTMPV----RGADNRCISFGVDVGDYHL-------NKQQGEIWL 255

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +    L      L G     NAL A  L  A+GI  +  L+ L     +P RF+ V
Sbjct: 256 RVRGEKVLNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLV 313


>gi|116492948|ref|YP_804683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265588|sp|Q03EY1|MURD_PEDPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116103098|gb|ABJ68241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 131/321 (40%), Gaps = 64/321 (19%)

Query: 90  TPILVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P+LV    R    +    L Y      ++ VTG++GK++V + +Q +   +   ++  G
Sbjct: 87  NPVLVDAQARGIKIVSEPELAYWVMDSELIGVTGSNGKTTVTTLIQLMLDDNKKHAYVAG 146

Query: 149 ----PTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
               P +T++  + A+D  +   S   LA  +  L      H++V               
Sbjct: 147 NIGVPATTVAQKATAEDKIVMELSSFMLA-GIDRLHP----HIAV--------------- 186

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H+D+H+T++ Y N KM + +    K+   +I  D+   +E+ KR   
Sbjct: 187 ------LNNIFASHLDWHKTRENYVNDKMNITKN-QTKDDFLVINWDNTEWQELAKRTQ- 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFL------FPLPGEFQVYN 314
              +V+    QG    L K  A          +EGK +  D L        +PGE  V N
Sbjct: 239 --AKVVPFSRQG----LTKSGAYE--------IEGKLYFKDELIMEADEIGIPGEQNVEN 284

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMIL 373
           AL A  +     + +A + + L     V  R ++V  N  G + Y D   T   + ++ L
Sbjct: 285 ALAAIAVAKIEKVSTAHIKQVLTTFGGVKHRIQYV-ENLNGRQFYNDSKATDIEATQVAL 343

Query: 374 KNIRTITSGRIIVVFGCGGDR 394
           ++ +     + +++   G DR
Sbjct: 344 RSFK-----KPVILIAGGLDR 359


>gi|241762283|ref|ZP_04760364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373186|gb|EER62816.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 441

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 55/255 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TGT+GKS+  + +  I + +GL +  +G    +   A D     P P         
Sbjct: 124 VVGITGTNGKSTTTALIHHILKEAGLPTL-MGGNIGLPLLAAD-----PLP--------- 168

Query: 177 LSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               G  +V +E SS+ +D    LD    +    TN+  DH+D H   + Y  AK RLF 
Sbjct: 169 ---DGGVYV-LELSSYQIDLTFTLDCDIAV---LTNITPDHLDRHGGFEGYRKAKERLF- 220

Query: 236 ELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             L + SP  A+I  DD  S+ + K++                 HL  V A +      I
Sbjct: 221 --LLQSSPHYAVIATDDIPSQVIAKQSA---------------AHLVTVHADN------I 257

Query: 294 SVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           S E +     +P L G     NA++A  +   +GI   ++ + L     +P R + +G  
Sbjct: 258 SAEDQ---INWPNLQGPHNAQNAVLAMAVAHILGISDDVISKALVSYAGLPHRMQKIG-- 312

Query: 353 SRGGRIYVDYAHTSN 367
            R G +++D +  +N
Sbjct: 313 ERRGVLFIDDSKATN 327


>gi|116329177|ref|YP_798897.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121921|gb|ABJ79964.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 527

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K++ F    PGE  + NAL A   C   G     ++  + +   V  R E++G+ + G  
Sbjct: 341 KEYSFFLKYPGEHYLKNALAAILACSEAGAPVTELVSQISEYSGVSRRLEYLGSKN-GIE 399

Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
           +Y DY H    ++ +++++  +  +GR I++F
Sbjct: 400 VYDDYGHHPTEIKAVIQSMEGLKKNGRAIILF 431


>gi|315604422|ref|ZP_07879488.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315314128|gb|EFU62179.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 463

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 16/189 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D + +++ +    +     L+P     +  A+D  +  +   A + G RV++
Sbjct: 181 TNVEPDHLDRYHSREEFEEIFVEFVRRLVPG-GLLVACAEDPGAARLADTAKSLGARVVT 239

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAG 320
            G +        V        V++  EG      +          +PGE  V NA  A  
Sbjct: 240 YGREEHSQCEADVLIC----DVSVDAEGASASLAWGPRRARLRLAVPGEHHVLNAAAAWV 295

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             I  G++   + + L        RFE  G    G R++ DYAH    +E  ++  R + 
Sbjct: 296 AGIECGVEPQAMADGLGTYAGAARRFESRGAVG-GRRLFDDYAHHPTEVEAAIEQARVVA 354

Query: 381 S-GRIIVVF 388
           + G + VVF
Sbjct: 355 AGGEVTVVF 363


>gi|209884381|ref|YP_002288238.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872577|gb|ACI92373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oligotropha
           carboxidovorans OM5]
          Length = 465

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 24/157 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           +A+TGT+GKS+  +    + + +G  +   G   T I S A       P  +Y+      
Sbjct: 117 IAITGTNGKSTTTALTAHLMREAGFDAQMGGNIGTAILSLAP----PAPQRVYV------ 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS+ +D      +    G   N+  DHID H + + Y   K RL   
Sbjct: 167 ----------IEMSSYQIDL--TPSLDPSVGILLNVTEDHIDRHGSIEHYAEVKERLVVG 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            +P+   AI+  DD +S +  + A + G  V+ V  Q
Sbjct: 215 -VPRGGTAIVGVDDDFSTKAARAAEDTGKHVVRVSVQ 250


>gi|2073484|emb|CAA72472.1| UDP-MurNAc-pentapeptide synthetase [Rickettsia prowazekii]
          Length = 96

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 10/83 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH +I  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEIND-------KD 74

Query: 91  PILVVDNTRKFLSLFASRLYGKH 113
            I++V+N+  F +L    LY + 
Sbjct: 75  KIILVNNS--FEALQKMALYKRE 95


>gi|320093974|ref|ZP_08025801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979080|gb|EFW10596.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 457

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 109/278 (39%), Gaps = 32/278 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D + +++A F A    F   L      +  A+D  +  +   A   G   ++
Sbjct: 181 TNVEPDHLDRYGSREA-FEAVFAEFASRLVPGGALVACAEDPGASRLASHARERGITTIT 239

Query: 270 VGYQGKFIH-----LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G  G+        ++ V +  +     +  +G+       + GE  V NA  A     A
Sbjct: 240 YGRPGRCAQRPDAAIEDVDSTASGSTARVEWDGQAAVLRLAVAGEHNVLNATAALLAGAA 299

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +G+    +   L        RFE  G   SR  R++ DYAH    +   L+  R +  +G
Sbjct: 300 LGLGLPEMAAGLASFTGTARRFEERGRVGSR--RLFDDYAHHPTEVAAALRQARVVAGAG 357

Query: 383 RIIVVFGCGGDRDQGKRPIM----------GKIALDLADIAIVTDDNPRSEDPEK--IRA 430
            + VVF          +P +             AL  AD  +VTD     EDPE      
Sbjct: 358 GVTVVF----------QPHLYSRTRIFAARFAEALAAADHVVVTDVYAAREDPEPGVDST 407

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I   +PG +   +  EA RT   ++++  +L+  G G
Sbjct: 408 LITSALPGSLHVPDMHEAARTGAGLVDEGGILITMGAG 445


>gi|288958919|ref|YP_003449260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
 gi|288911227|dbj|BAI72716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
          Length = 498

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 142/382 (37%), Gaps = 42/382 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P  W       V+ DSR +  G +FVAI G   DGH F+  A+A        + A  +  
Sbjct: 24  PSAW---AATGVAIDSRKVAPGDLFVAIRGPNFDGHAFVGAALAA------GAVAALVDH 74

Query: 82  FSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
               + ++ P+L+   +  + ++             I+ VTG+ GK+     ++ +    
Sbjct: 75  PPDGLPADAPLLIAPVDPLEAMAAMGVVARANCGARIIGVTGSVGKTGTKETLRHVLSAQ 134

Query: 141 GLSSFQIGPTSTISSFAQDNRLTT--PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           G            +++A +  L      P+ LA+ L   S+ GV  + +  +       R
Sbjct: 135 G------------ATYATEGSLNNHWGVPLSLAR-LPADSAYGVFELGMNHAGEIGPLSR 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +K      T +   H+++    +A  +AK  +FE L P     +   +  Y++    
Sbjct: 182 Q--VKPHVAIITTVEAAHLEFFSGVEAIADAKAEIFEGLDPNGVAVLNRDNGQYARLAAA 239

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +    V   G   K       C++H     VT  + G+   +    PG   V N+L 
Sbjct: 240 ARRHGLSHVWGFGTDEKADARLLDCSLHATCSAVTAVIRGERLQYCLSQPGRHWVMNSLS 299

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYVDYAHTSNSLEM- 371
                 A+G D A     L  L  V GR    GT  R     G    +D ++ ++   M 
Sbjct: 300 VLLAVKALGGDVATAARALSSLPSVKGR----GTRRRIQLPQGAFTLIDESYNASPAAMA 355

Query: 372 ----ILKNIRTITSGRIIVVFG 389
               +L  I     GR + V G
Sbjct: 356 ATLEVLGKIDPGAGGRRVAVLG 377


>gi|262202909|ref|YP_003274117.1| UDP-N-acetylmuramate/alanine ligase [Gordonia bronchialis DSM
           43247]
 gi|262086256|gb|ACY22224.1| UDP-N-acetylmuramate/alanine ligase [Gordonia bronchialis DSM
           43247]
          Length = 529

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 132/367 (35%), Gaps = 74/367 (20%)

Query: 61  PQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPEN 116
           P A+ Q  G  +++V++        A I    P LV   +R    L   R+  +      
Sbjct: 68  PSALDQIPGGPSVIVTT-------HAAIPKTNPELVAARSRGIPILLRPRVLAELMAGHR 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            L + GT GK+S  S      Q  G                QD        +  +   ++
Sbjct: 121 TLLIAGTHGKTSTTSMAVVALQHCG----------------QDPSFAIGGELNESGTNAH 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               GV     + S   L ++  D + +     TN+  DH+D+  T + Y  A    F +
Sbjct: 165 HGHDGVFVAEADESDGSLLEYTPDVVVV-----TNIDVDHLDFFGTIERYV-AVFDDFAD 218

Query: 237 LLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN----- 287
            +      ++  DD    A    V  R  + G  VL  GY G+ +H      +H+     
Sbjct: 219 RIVDGGTLVVCLDDPGAAALGGRVAARLGDRGVAVL--GY-GEGVHAGLAPGVHHVAHLL 275

Query: 288 ---------KQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                    + +V  +     E  +F     LPG+    N + A   C  +G D A V+ 
Sbjct: 276 SWSASATGGQARVRFTAPLVDEPSEFTVGLTLPGKHMSLNGIGAIIGCARLGADLAGVIS 335

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIR-----------TITS 381
            +     V  RFEF G   R G + V  DYAH    +  +L   R           T  +
Sbjct: 336 GIGAFGGVHRRFEFRG---RCGGVDVIDDYAHHPTEVAAVLTAARDMVTARTDGPATGRA 392

Query: 382 GRIIVVF 388
           GR+I VF
Sbjct: 393 GRVIAVF 399


>gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
 gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
          Length = 458

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 6/119 (5%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI   ++    I+ VS+D+R I+ G ++V + G   +GH F+ +A  +GA A    + +S
Sbjct: 16  SIIDERYASVMIHGVSTDTRTIERGNLYVPLKGATFNGHQFVKEAFEKGAAA----ALWS 71

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
             + +A   ++ P++ V+++   L   A     +    I+ VTG++GK++    +  + 
Sbjct: 72  KHEPNAP--TDVPLIFVEDSLVALQQLAHAYRKQLRACIIGVTGSNGKTTTKDMIASLL 128


>gi|329943203|ref|ZP_08291977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|332287783|ref|YP_004422684.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|313848356|emb|CBY17359.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila psittaci RD1]
 gi|325506725|gb|ADZ18363.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|328814750|gb|EGF84740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|328915041|gb|AEB55874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
          Length = 420

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 28/175 (16%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQ 138
           S  I+++ P++V    R    +   +L  + PE      + VTG++GK++   F+  + +
Sbjct: 66  SPGIKTSHPVIVEAKHRGIPVVTDIQLAFQDPEFHRYPSIGVTGSAGKTTTVLFLVHLLR 125

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G+S+  +G                  PI     L  +  +G+    VE SS  L +  
Sbjct: 126 SVGISACAMGNIGF--------------PI-----LQAMYQKGIR--VVEMSSFQLAEQE 164

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           ++   L A +  N+  +H+DYH T QAY  AK  + + L   +SP  ++  D  S
Sbjct: 165 IEIPVLSAATILNISENHLDYHYTLQAYSEAKSNIVKCL---QSPESLWVGDGVS 216


>gi|33239474|ref|NP_874416.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|44888179|sp|Q7VEJ1|MURC_PROMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33236999|gb|AAP99068.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 472

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 41/291 (14%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+  DH DY+    +  N  ++ F +   K     I A+  Y    +++A    C 
Sbjct: 186 GLLTNIELDHTDYYTNIDSLINT-IKKFTKNCKK-----IVAN--YDCNNLRKA----CP 233

Query: 267 VLSVGY---QGKFIHLKKVCAIHNKQQVTISV--EGKDFDFL-FPLPGEFQVYNALVAAG 320
             ++ +   + K I+   +  I N Q    S    GK  D +   LPG   + N L A  
Sbjct: 234 DKTIWWSTNEFKNINFAAIPKIMNGQITLASYYENGKYIDDISISLPGVHNLNNTLGAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL------- 373
            C +  I+ + +  H+  L     RF+F G   +G +I  DYAH  + +   L       
Sbjct: 294 ACRSADINFSDIKPHVSSLKCPERRFQFKGI-WKGRQIVDDYAHHPSEIRETLSMARLMI 352

Query: 374 ---KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP--- 425
              K+I  + + RI+V+F     R    R ++ + A +L  AD+ I+T      E+P   
Sbjct: 353 NTKKSILPMAADRIVVIF--QPHRYSRTRDLITEFAKNLGAADLVILTPIYSAGEEPIKG 410

Query: 426 ---EKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHET 471
              EK+++  +   P   I    ++  +   I +  ++ D+L+  G G  T
Sbjct: 411 ITSEKLKSCTLANNPNLPIFTCKQLRDLENIINLKTRENDLLLFMGAGDIT 461


>gi|116330215|ref|YP_799933.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116123904|gb|ABJ75175.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 527

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K++ F    PGE  + NAL A   C   G     ++  + +   V  R E++G+ + G  
Sbjct: 341 KEYSFFLKYPGEHYLKNALAAILACSEAGAPVTELVSQISEYSGVSRRLEYLGSKN-GIE 399

Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
           +Y DY H    ++ +++++  +  +GR I++F
Sbjct: 400 VYDDYGHHPTEIKAVIQSMEGLKKNGRAIILF 431


>gi|37523895|ref|NP_927272.1| cyanophycin synthetase [Gloeobacter violaceus PCC 7421]
 gi|35214901|dbj|BAC92267.1| cyanophycin synthetase [Gloeobacter violaceus PCC 7421]
          Length = 876

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR      N  G  + VDYAH     E I + +  + + R I V G  GDR       +
Sbjct: 725 PGRLNVFDVN--GFEVIVDYAHNPAGYEAIQQVLERMDNPRKIGVIGGPGDRRDEDLRKL 782

Query: 403 GKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI 436
           G +A  + D AIV  DD+ R   P++  + I+ GI
Sbjct: 783 GYLAAGMFDAAIVKEDDDRRGRAPDEAASLIVEGI 817


>gi|254464869|ref|ZP_05078280.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
 gi|206685777|gb|EDZ46259.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
          Length = 465

 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 10/125 (8%)

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  R +++ Y+    H   V    ++      +EG       P+PG+  V NAL A  + 
Sbjct: 248 ADVRAVNLTYKAGVAHFDVVLQAEDR-----VIEG----CTLPMPGDHNVSNALSAVAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G++S  + E L     V  RF  VG    G  I  DY H    +  +LK  R    G
Sbjct: 299 RHLGMNSTEIREALAAFGGVNRRFTKVG-EVNGVTIIDDYGHHPVEIAAVLKAARQACEG 357

Query: 383 RIIVV 387
           R+I V
Sbjct: 358 RVIAV 362


>gi|309811809|ref|ZP_07705583.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
 gi|308434230|gb|EFP58088.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
          Length = 944

 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 23/153 (15%)

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--------RIIVVFGCG 391
           ++ PGR   +  +     ++VDY H    L+++ + +    +G        RI+VV   G
Sbjct: 746 YLSPGRLNRIEVDH--AEVFVDYCHNPAGLQLLGEFVDRYVAGKNKSTRVQRIVVVGAAG 803

Query: 392 GDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIEKG------- 443
             RDQ  R  MG++A    D  I+  DDN R   P +  A +  G    I+ G       
Sbjct: 804 DRRDQDIRE-MGELAAKWFDHVIIREDDNLRRRAPGETAALVAEGAQQAIDSGEARAASV 862

Query: 444 ----NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
               + +EA + AI+     D++V+    H  V
Sbjct: 863 ETVLDELEATQVAIDSARAGDLVVICADKHARV 895


>gi|229134722|ref|ZP_04263531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
 gi|228648768|gb|EEL04794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 25/194 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  +II ADDA   +VM   A++ G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEADY-SIINADDA---DVMALSAYSKGQ 239

Query: 266 RVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +VL    +    G +I   K  A++ K +  + V     D +  LPG+  + N L A  +
Sbjct: 240 KVLFSTTKEIEDGAYI---KDNALYFKGEKVVKVS----DIV--LPGKHNLENILAAMSI 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              +G+ +  ++  L+    V  R E+V T N+R  + Y D    S +  M+        
Sbjct: 291 AKLLGVSNEAIIAVLKSFTGVKHRLEYVTTINNR--KFYND----SKATNMLATEKALSA 344

Query: 381 SGRIIVVFGCGGDR 394
             + IV+   G DR
Sbjct: 345 FTQPIVLLAGGLDR 358


>gi|330811578|ref|YP_004356040.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379686|gb|AEA71036.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 486

 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 166/432 (38%), Gaps = 74/432 (17%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 73  AANADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 125

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  
Sbjct: 126 GKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHL 182

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-- 237
           Q +  V                        TN+  DH+    T    FN   + F E   
Sbjct: 183 QPLVAV-----------------------VTNIDADHM---ATYDGDFNKLKKTFVEFLH 216

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    A++  DD   +E++          ++ G+ G+   ++ +       Q   +V 
Sbjct: 217 NLPFYGLAVVCLDDPVVREILPLIKRP---TMTYGF-GEEADVRAINVRQQGMQTFFTVL 272

Query: 297 GKD---FDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGT 351
             D    D    +PG   V NAL  A +CIA   G+    +++ L     V  RF+  G 
Sbjct: 273 RPDREPLDVSVNMPGNHNVLNAL--ATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGE 330

Query: 352 -NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               GG + +  DY H    +  ++K +R      R+++V+     R    R +      
Sbjct: 331 LPVDGGNVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQP--HRYSRTRDLYDDFVQ 388

Query: 408 DLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEML 456
            LAD  + ++ +  P  E+  P     ++ H I       P +IE+G  ++       +L
Sbjct: 389 VLADANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYIERG--VDLAPLVKPLL 446

Query: 457 NKQDVLVVAGKG 468
              D+L+  G G
Sbjct: 447 RAGDILLCQGAG 458


>gi|260899196|ref|ZP_05907591.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AQ4037]
 gi|308107130|gb|EFO44670.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AQ4037]
          Length = 410

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 115/287 (40%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   ++DDA  +  ++  H         G QGKF  ++K  A 
Sbjct: 234 IDDPVIRELIPRISRQVITYGFSDDADVR--IENYHQE-------GQQGKFTVVRKGRA- 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        + D    +PG     NA  A  +     I+   +L+ +        R
Sbjct: 284 -------------NLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRR 330

Query: 346 FEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G     +  DY H    +++ +   R+     R++++F
Sbjct: 331 FDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIF 377


>gi|283458382|ref|YP_003363006.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
 gi|283134421|dbj|BAI65186.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
          Length = 539

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 23  MQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSL 79
           ++ RE ++  +  ++DSR +Q G +FVA  G   DGH FIP A  +GA  A+V       
Sbjct: 20  LEGREEQVYADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMAFERGATLALVEREVLDE 79

Query: 80  QDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           Q     +I+    +L + +  ++ S+   R  G+    ++ +TG++GK++    +  I  
Sbjct: 80  QGMPYPSIQVPDVVLAMGDLARY-SIEQMRAQGEL--TVIGITGSAGKTTTKDLLAAIFA 136

Query: 139 RSGLSSFQIG 148
             G +   +G
Sbjct: 137 PEGPTVAPVG 146


>gi|295677761|ref|YP_003606285.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437604|gb|ADG16774.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 113/290 (38%), Gaps = 39/290 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    R+   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL T   I              
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV------------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                 A +   D   L+   +I    TN+  DH+D +    A        F   LP   
Sbjct: 159 ------AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDF 300
            A++  DD   KE++        R  L+   Q + ++++   A   +   T+  E     
Sbjct: 212 IAVLCVDDPNVKEILPFVSKPIIRYGLAADAQVRAVNVE---AREGRMHFTVMREDAAPL 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           D    LPGE  V NAL A  +   + +  A +   L   + V  RF+  G
Sbjct: 269 DVTLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYG 318


>gi|46199022|ref|YP_004689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
 gi|46196646|gb|AAS81062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 131/354 (37%), Gaps = 60/354 (16%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G +F A+ G    G  FIP+A+A+GA  ++       Q   AT+    P   +    + L
Sbjct: 50  GSLFAALPGRTTHGRHFIPEALARGASLVLAD-----QAGPATLEVEDPWQALLRLGEAL 104

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                RL+   P  +LAV G+SGK++     + + Q  GL +    P   ++        
Sbjct: 105 R----RLF---PGPVLAVGGSSGKTTTK---EALAQGLGLPA----PPGNLN-------- 142

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T P  +     L   S   V  + V+      +   L    L     T LG +H++   T
Sbjct: 143 TAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKPHLAV--LTALGEEHLEAFGT 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +     +  L        +P  +  + A                L +G +   +     
Sbjct: 201 LEKAVQEEAHLLR------APTALVGEQAAP--------------LVLGLREDLLVYGFA 240

Query: 283 CAIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 + + + +    F +       P PG    Y AL A      +G+    V E L 
Sbjct: 241 EGTFRGRDLELGLRESRFRYGGLHVRVPYPGLGPAYGALAALAAAEVLGLSLEEVAERLS 300

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFG 389
           +L + PGR E   T   GG ++V+ A+ +N L  +   +R + +  GR   V G
Sbjct: 301 RLTLPPGRME---TREVGGVVFVNDAYNANPLS-VKAGLRWLAAQPGRKWAVLG 350


>gi|148257416|ref|YP_001242001.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
 gi|166222959|sp|A5EPK1|MURC_BRASB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146409589|gb|ABQ38095.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 131/333 (39%), Gaps = 48/333 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GADVVVVSTA---------IKRDNPELMTARAQRIPVVRRAEMLAELMRLKSCVAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +    G+    I     I+++  + RL     +                
Sbjct: 117 GKTTTTSMVAALLDAGGIDPTVIN-GGIINAYGTNARLGAGDWMV--------------- 160

Query: 185 VSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             VEA     D+     +KL A     TN+  +H+D+ +T  A  +A  R F E +P   
Sbjct: 161 --VEA-----DESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRAFVENVPFYG 212

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF- 300
            A++  D    + ++ +  +   R+++ G   +  + L  +   +   +  +    +   
Sbjct: 213 FAVMCIDHPVVQALVGKIEDR--RIITYGVNPQADVRLVDLSPANGSSRFKVVFRDRKSG 270

Query: 301 ------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D   P+PG     NA  A  +   +GI    + + +     V  RF   G    
Sbjct: 271 ATHEISDITLPMPGRHNASNATAAIAVAHELGISDEAIRKAIAGFGGVKRRFTRTG-EWN 329

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           G  I  DY H    +  +LK  R  TSG++I V
Sbjct: 330 GVTIIDDYGHHPVEIAAVLKAARESTSGKVIAV 362


>gi|118602749|ref|YP_903964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567688|gb|ABL02493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 433

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 45/184 (24%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K+   +FI   IAQ  E+IV+ +             N P++        + LF+   + K
Sbjct: 60  KKVDEIFISPGIAQN-ESIVIWAK----------EQNIPVI------SDIELFSR--FAK 100

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P  I+ +TG++GKS+V   + Q+   +G+              A    + TP    L +
Sbjct: 101 AP--IIGITGSNGKSTVTQLLTQMIINAGMQ------------VAMGGNIGTPVLDCLNE 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            + Y          +E SS+ LD  H L+   LI G   N+  DH+D +Q  + Y N+K+
Sbjct: 147 KIEY--------YVLELSSYQLDYSHHLN---LIVGVVLNITPDHLDRYQNFKHYINSKL 195

Query: 232 RLFE 235
            L++
Sbjct: 196 SLYQ 199


>gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF
           [Bifidobacterium bifidum PRL2010]
 gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 513

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 143/368 (38%), Gaps = 63/368 (17%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-- 92
           SDSR ++ G +FVAI G + DGH F+ +A   GA   +V               + P+  
Sbjct: 39  SDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALVQHEV-----------DAPVAQ 87

Query: 93  LVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +VV +T   L L      A+R     P  ++ +TG+ GK++    +  +          +
Sbjct: 88  IVVPDTVDALGLLAKANIAARRAVGTPFTLIGITGSVGKTTTKDLMAALLS-------TL 140

Query: 148 GPT-STISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKL 204
           GPT + + SF  +N +  P + + + +   +  ++ G +HV         +  RL  I  
Sbjct: 141 GPTVAPVGSF--NNEIGLPLTALKVGRDTRFFVAEMGASHVG--------EITRLTTIAP 190

Query: 205 --IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             IA     +G  H+    + +    AK  + + L+P +  A++ ADDA+   +   A  
Sbjct: 191 PDIA-VVLKVGCAHLGEFGSVERIAQAKSEIVQGLVP-DGLAVLNADDAHVAAMAPLAPQ 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------------- 305
               V   G  G         A   K     + + +  D   P                 
Sbjct: 249 G--HVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLA 306

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYA 363
           + G   V NAL AA +   +G+    + E L +   +      V T  RGG  +  +D +
Sbjct: 307 IRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDS 366

Query: 364 HTSNSLEM 371
             +N   M
Sbjct: 367 FNANPDSM 374


>gi|146328783|ref|YP_001209872.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
 gi|146232253|gb|ABQ13231.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
          Length = 436

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 41/233 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKAL 174
           + AVTG++GKS+V + +    +  GL +   G    S ++++ +D        +Y+    
Sbjct: 103 VAAVTGSNGKSTVVTMLADAARAVGLKTQLCGNIGKSVLTAWLEDEE---EPDLYV---- 155

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS+ L+  R   + +  G   N+  DH+D + +   Y  AK  L 
Sbjct: 156 ------------LELSSYQLE--RCPSLMIDVGVVLNVTPDHLDRYDSFLDYVAAKSHLA 201

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTI 293
           ++        I+  DD Y +++   +        +V +  + ++ ++    I N Q V  
Sbjct: 202 QQ----TQLTILNGDDEYCRQMAPLSRQ------TVFFGAQCVNRVENGAIIVNGQTVLT 251

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           + E K       + G+   YNALVA  +   +GID +  LE L+    +P R 
Sbjct: 252 ADELK-------IHGQHNAYNALVALLMASGLGIDISYTLEALKNFRGLPHRM 297


>gi|332291225|ref|YP_004429834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169311|gb|AEE18566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 424

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 26/235 (11%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           ++I  + +     N V +D+R +Q   I++++ G+  +G+ F  QA+  GA   V+    
Sbjct: 1   MTIAELHFHFLNSNGVCTDTRSLQKNQIYISLKGDNFNGNKFAKQALKDGARLAVIDEKE 60

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQ 135
              D++         ++VD+  K L   A+  R Y   P  I+ +TG++GK++    +  
Sbjct: 61  YEDDYT---------VLVDDVLKTLQQLANYHRNYLNLP--IIGLTGSNGKTTTKELINA 109

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +     ++    G          +N +  P  +     LS  S+  +  V + A+  G  
Sbjct: 110 VLSEKYVTVATKGNL--------NNHIGVPLTL-----LSMDSTTEIGIVEMGANHQGEI 156

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
               +  +   G  TN G+ H++     +     K  L+  L   E  A I   D
Sbjct: 157 AMLCEIAQPNFGYITNFGKAHLEGFGGFEGVIKGKSELYNYLRDNEEMAFINDTD 211


>gi|270159563|ref|ZP_06188219.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella longbeachae D-4968]
 gi|289165641|ref|YP_003455779.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269987902|gb|EEZ94157.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella longbeachae D-4968]
 gi|288858814|emb|CBJ12728.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Legionella longbeachae NSW150]
          Length = 454

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 33/316 (10%)

Query: 73  VSSAYSLQD----FSATIRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGT 123
           V + Y+LQ         I+   P+L  V+++ + + S     A  +  K    ++AV+GT
Sbjct: 54  VDTRYALQADLIIVGNAIKRGMPVLEAVLESGKPYTSGPQWLAENILSKF--QVIAVSGT 111

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S +  I  ++GL+  F IG  S  S F     L +    ++ +A  Y S+   
Sbjct: 112 HGKTTTTSMIAWILHQAGLNPGFLIGGVS--SDFKTSACLGS-GKWFVIEADEYDSAFFD 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                         H    I ++     NL  DH D + T  A    +   F   +P   
Sbjct: 169 KRPKF--------MHYRPRIAIL----NNLEFDHADIY-TDLAAIQLQFHYFLRTIPASG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI    D    EV+ R   +    LS+    ++          N     +   GK+   
Sbjct: 216 VAIKPCHDQALNEVIARGQYSRIEELSLDGDAQW---SAKLLEDNGSAFKVLYLGKEVAK 272

Query: 303 L-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           + +PL G F V N L A    +  G+   +    LE+   V  R E V +N  G  +Y D
Sbjct: 273 VNWPLIGRFNVENGLAALAASVNAGVSPEVAARALERFTPVKRRLE-VRSNMHGITVYDD 331

Query: 362 YAHTSNSLEMILKNIR 377
           +AH   ++   +  ++
Sbjct: 332 FAHHPTAIRRTVDALK 347


>gi|257051689|ref|YP_003129522.1| dihydropteroate synthase [Halorhabdus utahensis DSM 12940]
 gi|256690452|gb|ACV10789.1| dihydropteroate synthase [Halorhabdus utahensis DSM 12940]
          Length = 813

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 132/358 (36%), Gaps = 59/358 (16%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQ 134
           +   +F   +R   P    D TR+ L+     L   H E+I AV   G++GK S A  ++
Sbjct: 4   HEAANFLFDLRRFAPRPGTDATRELLAA----LDDPH-ESISAVQIAGSNGKGSTARMLE 58

Query: 135 QICQRSGLS-SFQIGP------------------------TSTISSFAQDNRLTTPSPIY 169
            + + +GL       P                           +  +A D      SP +
Sbjct: 59  AVLREAGLDVGLYTSPHLDDVRERVRVNGRKIPKAALVEFIEEVEPYATDRAAAGDSPTF 118

Query: 170 L----AKALSYLSSQGVTHVSVEASSHGLDQHRLDG---IKLIAGSFTNLGRDHIDYHQT 222
                A A      Q V    +E    G    R D    +  IA + T++  +H D    
Sbjct: 119 FETLTALAFWEFDRQNVDVAILEVGIGG----RYDATSVVDPIASAVTSVTLEHTDLLGD 174

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                +   R    + P ++P +  A    + + +   H+    V+ +G   +   L   
Sbjct: 175 T---VDEIARDKAAVAPADAPLVTAA----TGDALAAIHDEVEDVIRIGSPDEDADLTVE 227

Query: 283 CAIHN--KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC--IAIGIDSALVLEHLEK 338
               +  +  +T+S +G D +   PL GE Q  NA VAA L   +A   D  L    L +
Sbjct: 228 HGGRDGIESPITLSGQGLDVETRLPLLGEHQARNAGVAAALARQVADVTDETLAT-GLRR 286

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            H  PGRFE +    R   + +D AH     E + + + T     + +V G   D+D 
Sbjct: 287 AH-WPGRFEVL---DREPLVVLDGAHNPGGCERVAETLDTFEYDELHLVVGAMCDKDH 340


>gi|218509398|ref|ZP_03507276.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli Brasil 5]
          Length = 248

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI S  + + L     V  RF   G  + G +I+ D
Sbjct: 55  LVMPMPGRHNISNATAAIAVANRLGISSVDIAKGLASFGGVKRRFTLTGEWN-GVQIFDD 113

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GRII V
Sbjct: 114 YGHHPVEIKAVLRAAREACKGRIIAV 139


>gi|148273042|ref|YP_001222603.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830972|emb|CAN01917.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 514

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 18/191 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SSH L  H +  ++  + +F NL  DH+++H ++ AY  AK R++ +       A +
Sbjct: 191 VELSSHQL--HYMREVRPYSSAFLNLADDHLEWHGSRAAYAAAKGRVYAD----TRVACV 244

Query: 247 Y--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAI-----HNKQQVTISVEGK 298
           Y  AD A    + +     G R +  G        L  V  I       +++ T ++E  
Sbjct: 245 YNRADRATEDALREADVQDGARAIGFGLDAPGPSDLGIVDGILCDRAFLEERFTSALELT 304

Query: 299 DFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D L    L     V N L AA L  + G++  +V + L +  +   R E +G   R G
Sbjct: 305 TLDELRAVGLAAPHIVQNILAAAALARSYGVEPGVVRQALLRFELDSHRIERIG--ERDG 362

Query: 357 RIYVDYAHTSN 367
             +VD +  +N
Sbjct: 363 VAFVDDSKATN 373


>gi|94987544|ref|YP_595477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
           intracellularis PHE/MN1-00]
 gi|122063249|sp|Q1MPC1|MURD_LAWIP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94731793|emb|CAJ55156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 440

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 20/137 (14%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           NT + LS      Y    E ++A+TGT+GK+++AS    +    G+S F  G        
Sbjct: 103 NTIQVLSETELAWYQLSNEKVIAITGTNGKTTIASLCAAMLVEQGISVFVGG-------- 154

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                + TP   Y+      L  + V+ V +E SS  L    L   +      +N+  +H
Sbjct: 155 ----NIGTPLSEYV------LCKKKVSVVVLELSSFQLQTCSL--FRPDIAICSNISINH 202

Query: 217 IDYHQTQQAYFNAKMRL 233
           +DYH+    Y +AK+ +
Sbjct: 203 LDYHRNMDEYISAKLNI 219


>gi|37543036|gb|AAL79558.1| MurE [Neorickettsia sennetsu]
 gi|37543039|gb|AAL79560.1| MurE [Neorickettsia sennetsu]
 gi|38565249|gb|AAR23989.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamiaopimelate ligase
           [Neorickettsia sennetsu]
          Length = 156

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRD 395
           E++  + G  EF+       +I  D A T + L  +L +I+       + +V  C  + +
Sbjct: 1   EQISPLAGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDVTLVLRCSENYE 60

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                 M KIA  + +  I T D+  S   EK R E++   P  IE  +R +A+  AI  
Sbjct: 61  GKNTLKMAKIAAKMVNRIIFTSDSNGSTLTEKSRRELMSCCPKAIEIEDRKKAMEYAINN 120

Query: 456 LNKQDVLVVAG 466
               +++V+ G
Sbjct: 121 CKPSEIIVMQG 131


>gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
 gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
          Length = 824

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 139/330 (42%), Gaps = 39/330 (11%)

Query: 29  KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +I  + +DSR +      +F A+  ++ DGH +IP+   +G     V     L D S++ 
Sbjct: 23  RIGFILTDSRSLCFPEETLFFALKSDRNDGHRYIPELYRRGVRNFAVE---VLPDSSSSY 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGL 142
            ++   L V +T K L + A     KH E     I+ +TG++GK+ V  ++ Q+      
Sbjct: 80  -TDANFLKVADTLKALQMLAK----KHRETFHIPIIGITGSNGKTMVKEWLYQLLMPERF 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                    T S  + ++++  P  ++L   L+  +  G+    +      +D  R + I
Sbjct: 135 --------VTRSPRSYNSQIGVPLSVWL---LNENTQIGLFEAGISRPKE-MDALR-EII 181

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAH 261
           +   G  T +G  H +   + +     K+RLF     + +  I+Y  D+A +  ++    
Sbjct: 182 RPTIGVLTTIGTAHQENFASIEEKCREKLRLF-----RHAQTIVYCTDNALTARLISEES 236

Query: 262 NAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALV 317
             G  +  S   +   +++ ++      +  T+S   K+     +  P   +  V N++ 
Sbjct: 237 LEGEPIAWSTKDENAQLYVSRIEK--QAEHTTVSYRYKNHIEGQYTLPFIDDASVENSIT 294

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              + + +GI  A + + +  L  V  R E
Sbjct: 295 CTAVALYLGIAPAALAKRMAHLEPVAMRLE 324


>gi|18033116|gb|AAL56990.1|AF329282_2 cyanophycin synthetase [Synechococcus sp. MA19]
          Length = 903

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR       S      VDYAH  +S E +   +R+ T+G+ I V G  GDR       +
Sbjct: 726 PGRMNLFNLGSF--HALVDYAHNPHSYEALGCFVRSWTNGKRIGVVGGPGDRRDQDFITL 783

Query: 403 GKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           GK+A ++ D AIV  DD+ R          II GI     K  + E+I    + +NK
Sbjct: 784 GKLAAEIFDYAIVKEDDDTRGRTRGSAADLIIRGIKQVNPK-YKYESILDETQAINK 839


>gi|86282551|gb|ABC91614.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CFN
           42]
          Length = 452

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI S  + + L     V  RF   G    G +I+ D
Sbjct: 259 LVMPMPGRHNISNATAAIAVANRLGISSEDIAKGLASFGGVKRRFTLTG-EWNGVQIFDD 317

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +LK  R    GRII V
Sbjct: 318 YGHHPVEIKAVLKAAREACKGRIIAV 343


>gi|119773493|ref|YP_926233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           amazonensis SB2B]
 gi|119765993|gb|ABL98563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           amazonensis SB2B]
          Length = 443

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 27/152 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +    P  +LA+TG++GKS+V + V ++ +                    DN+
Sbjct: 101 VELFAREIQDMAP-CVLAITGSNGKSTVTTLVGEMAR-------------------ADNK 140

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                      AL  L  +G     +E SS  L+      +  IAG+  N+  DH+D + 
Sbjct: 141 AVAVGGNIGVPALELLG-KGAELFVLELSSFQLETTH--SLHCIAGTCLNISEDHMDRYT 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +AY  AK+RL+    P+   ++   DDA +
Sbjct: 198 DLEAYRQAKLRLY----PQSKLSVYNRDDAAT 225


>gi|316933184|ref|YP_004108166.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
 gi|315600898|gb|ADU43433.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
          Length = 465

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 22/157 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + + +G  + Q+G     +  +    L  P            
Sbjct: 117 VAITGTNGKSTTTALIAHLLREAGWDT-QLGGNIGTAILS----LEPP------------ 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  HV +E SS+ +D      +    G   N+  DHID H T + Y   K RL   +
Sbjct: 160 -KDGRVHV-IEMSSYQIDL--TPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
               + AI+  DD + +    R   AG RV+ +  QG
Sbjct: 216 QDGGT-AIVGVDDEFGRAAADRIERAGNRVVRMSVQG 251


>gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
 gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
          Length = 451

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 14/137 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       T     PI
Sbjct: 27  VCIDSKNMKEGNLFVPIIRVK-DGHEYVKEAMDNGAVASLWKKSY------GTPPKGIPI 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSSF 145
           + VD+T   L   A     +    ++ +TG++GK++V   +  I   +       G  + 
Sbjct: 80  IFVDDTLFALQQLAQFYRRELNVKVIGITGSNGKTTVKDIIGGILSSTYRVHKTKGNFNS 139

Query: 146 QIGPTSTISSFAQDNRL 162
           QIG   TI    +D   
Sbjct: 140 QIGLPLTILEMKRDTEF 156


>gi|56551725|ref|YP_162564.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|62900668|sp|Q5NPA7|MURD_ZYMMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56543299|gb|AAV89453.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 441

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 109/257 (42%), Gaps = 59/257 (22%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TGT+GKS+  + +  I + +GL +  +G    +   A D     P P         
Sbjct: 124 VVGITGTNGKSTTTALIHHILKEAGLPTL-MGGNIGLPLLAAD-----PLP--------- 168

Query: 177 LSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               G  +V +E SS+ +D    LD    +    TN+  DH+D H   + Y  AK RLF 
Sbjct: 169 ---DGGVYV-LELSSYQIDLTFTLDCDIAV---LTNITPDHLDRHGGFEGYRKAKERLF- 220

Query: 236 ELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHNKQQV 291
             L + SP  A+I  DD  S+ + K++                 HL  V A  I  + QV
Sbjct: 221 --LLQSSPHYAVIATDDIPSQVIAKQSA---------------AHLVTVHADNISAEDQV 263

Query: 292 TISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                       +P L G     NA++A  +   +GI   ++ + L     +P R + +G
Sbjct: 264 N-----------WPNLQGPHNAQNAVLAMAVAHILGISDDVISKALISYAGLPHRMQKIG 312

Query: 351 TNSRGGRIYVDYAHTSN 367
              R G +++D +  +N
Sbjct: 313 --ERRGVLFIDDSKATN 327


>gi|297242762|ref|ZP_06926700.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
 gi|296888973|gb|EFH27707.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
          Length = 601

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 29/226 (12%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           FP    +      + D+R I  G +   I GN +  +L    A  +G  A V   +Y+  
Sbjct: 64  FPNIDADECFTNATYDTRDITPGTLLF-IKGNFQSEYLL--NADNKGLAAYVAEQSYA-- 118

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC 137
            ++  +      L+V + +K +S+ A+  +G +P+  L + G   T GK++ A F   I 
Sbjct: 119 QYTKAVG-----LIVTDAKKAMSVLAAAFFG-NPQEKLTIVGITGTKGKTTTAYFTHAI- 171

Query: 138 QRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               L+S   G  +  SS           ++ LTTP      K +      G+ ++ +E 
Sbjct: 172 ----LNSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEV 227

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
           SS     +R+ G+K    +F N+  DHI    H T + Y   K ++
Sbjct: 228 SSQAYKVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQI 273



 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 28/217 (12%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRI 358
           +F   + G+F   NAL A  +   +GI+    L  L  +  V   GR E           
Sbjct: 391 EFALSIAGDFNYENALAAIAIAGELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIA 450

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            VDYAH   S + +L  +       + RI ++ G  GD+   +R  + + A +  +  I 
Sbjct: 451 VVDYAHNYISTKSVLDFVEERYGKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIF 510

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAI------EMLN-KQD 460
           T ++  +ED       I   +  ++   N        R EAI  A       E  N + +
Sbjct: 511 TTEDTDTEDV----MHICEDMQSYVTDPNVSSRIIIDRAEAIEYAYNDAANSEQKNGRLN 566

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495
           +L+  GKG E    + N  K +  + D  +I+ + GL
Sbjct: 567 ILLAIGKGDE--RWIKNKRKHVPYEGDSFVIKRLFGL 601


>gi|325981161|ref|YP_004293563.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
 gi|325530680|gb|ADZ25401.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
          Length = 857

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 310 FQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQ+ N L A G   A+GI      A V   +      PGRF     N R   +  DY H 
Sbjct: 675 FQIENVLAAVGAGWALGIGWSDICAGVTNFVNNTQTAPGRFNLF--NYRNATLIADYGHN 732

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            ++++ ++  I  I S +  VV    GDR
Sbjct: 733 PDAIQALVSAIENIPSRKRSVVISAAGDR 761


>gi|229061518|ref|ZP_04198862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
 gi|228717752|gb|EEL69402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 25/194 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  +II ADDA   +VM   A++ G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTETDY-SIINADDA---DVMALSAYSKGK 239

Query: 266 RVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +VL     +   G +I   K  A++ K +  + V          LPG+  + N L A  +
Sbjct: 240 KVLFSATKIIEDGAYI---KDNALYFKGEKVVKVSD------IVLPGKHNLENILAAMSI 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              +G+ +  +   L+    V  R E+V T N+R  + Y D    S +  M+        
Sbjct: 291 AKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNR--KFYND----SKATNMLATEKALSA 344

Query: 381 SGRIIVVFGCGGDR 394
             + IV+   G DR
Sbjct: 345 FTQPIVLLAGGLDR 358


>gi|16126795|ref|NP_421359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus CB15]
 gi|221235575|ref|YP_002518012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus NA1000]
 gi|30316113|sp|Q9A597|MURD_CAUCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766042|sp|B8H096|MURD_CAUCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13424123|gb|AAK24527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus CB15]
 gi|220964748|gb|ACL96104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus NA1000]
          Length = 471

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 101/250 (40%), Gaps = 43/250 (17%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K P+ I+A+TGT+GKS+  + +  +C  +G                +D R+     + + 
Sbjct: 114 KRPK-IIAITGTNGKSTTTALIGHLCASAG----------------RDTRVGGNIGLGV- 155

Query: 172 KALSYLSSQGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
             L      G     +E SS+ LD     + D + L+     N+  DH+D H     Y  
Sbjct: 156 --LGLEDMHGGAVYVLELSSYQLDLTSSLKPDAVVLL-----NISPDHLDRHGGMDGYIA 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVC 283
           AK R+F     K   AII  DDA+ +++      A  R +     GK +      L+ V 
Sbjct: 209 AKRRIFLN-QGKGDTAIIGVDDAWCQQICTEITAANRRTIWPISAGKAMGRGVYALQGVL 267

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                ++V   VE  D      LPG     NA  A     AIGI    + + ++ L   P
Sbjct: 268 YDATGERV---VEVADILRARSLPGRHNWQNAAAAYAAARAIGIS---MQDAVDGLMTFP 321

Query: 344 G---RFEFVG 350
           G   R E VG
Sbjct: 322 GLAHRMETVG 331


>gi|330994427|ref|ZP_08318352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
 gi|329758427|gb|EGG74946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
          Length = 463

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R +  G IF+A+ G   +GH  + +A+  GA  +V       +D     R    I
Sbjct: 31  VSIDTRTLHPGDIFIALRGENSNGHDHVARALEAGAACVVAH-----EDCGTDPR----I 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           L VD+T   +   A     +    +LAVTG+ GK+SV   +       G
Sbjct: 82  LRVDDTLAAMQAMARYARARFGGRMLAVTGSVGKTSVKDMLHAALAACG 130


>gi|317402452|gb|EFV83021.1| UDP-N-acetylmuramate-L-alanine ligase [Achromobacter xylosoxidans
           C54]
          Length = 468

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 122/314 (38%), Gaps = 50/314 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+AIV S+A +  +          I VV        L   RL     +  +AV GT GK
Sbjct: 64  GADAIVTSTAVAGDNPEVIAARAARIPVVPRAIMLAELM--RL-----KRGIAVAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  I     L  +F IG    ++S   + RL                 QG  ++
Sbjct: 117 TTTTSLVASILAAGDLDPTFVIG--GRLNSAGANARL----------------GQG-DYI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA     D   L+ + ++A   TN+  DH+D +    A   +    F + LP    A+
Sbjct: 158 VVEADES--DASFLNLLPVMA-IVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  DDA  +E+M         + S G  +   +   +V A  +  ++  +V+    D L 
Sbjct: 215 LCTDDANVREIMPFVSRP---ITSYGLNEDAMVRGYEVQA--DGTRMRFNVQRSHRDTLL 269

Query: 305 P-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNS 353
           P       LPG   V NAL A  +   +G+    + + L     V  RF    EF     
Sbjct: 270 PPLQVELNLPGLHNVRNALAAIAVATELGVSDEAIRDALASFKGVGRRFTQTGEFPVPAV 329

Query: 354 RGGRIYV---DYAH 364
            GG  +    DY H
Sbjct: 330 HGGGTFTVIDDYGH 343


>gi|313901115|ref|ZP_07834603.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium sp. HGF2]
 gi|312954073|gb|EFR35753.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium sp. HGF2]
          Length = 434

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 38/192 (19%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH+DY++  + Y +A    FE    + +   +++ DD            A  R L
Sbjct: 169 TNIELDHVDYYKDMEDYCDA----FEAFANQIQKGVVLFGDD------------AAVRSL 212

Query: 269 SVGYQGKFIHLK---KVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNA 315
            V  +  +  LK    V A+H KQ      +G  FD L+          P  G+  ++N+
Sbjct: 213 HVKTEHLYYGLKDHNDVQAVHVKQH----EDGMQFDVLYRKKLFAHFDLPFVGKPLLWNS 268

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILK 374
           L    + I  G+   L+ E L+    V  RF        G  +Y+ DYAH   +++ +++
Sbjct: 269 LGVIAIGIMEGLSGELLQEGLQSFPGVKRRFT---IEENGDNVYIDDYAHHPTAVKYMIE 325

Query: 375 NIRTITSGRIIV 386
             R    G+ ++
Sbjct: 326 AARIKYPGKKVI 337


>gi|296134865|ref|YP_003642107.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
 gi|295794987|gb|ADG29777.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
          Length = 469

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 124/316 (39%), Gaps = 56/316 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           Q A+A+VVS+A         +R++ P ++    R    +  + +  +    +  +A+ GT
Sbjct: 63  QDADAVVVSTA---------VRADNPEVLAARARHIPVVPRAVMLAELMRLKRGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    ++S   + +L                 QG 
Sbjct: 114 HGKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGVNAKL----------------GQG- 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++ VEA     D   L+ + ++A   TN+  DH+D +    A        F   LP   
Sbjct: 155 EYIVVEADES--DASFLNLLPVMA-VVTNIDADHMDTYGHDPARLRHAFVDFIARLPFYG 211

Query: 243 PAIIYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            A++  DDA  + +M            A +A  R + V  +G  +H   V   +  Q   
Sbjct: 212 AAVLCVDDAAVRGIMPFVSKPITSYGFAEDAQVRAIDVRAEGAQMHFT-VLRRNGVQLPP 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           ++V          LPG   V NAL A  +   + +D A +   L     V  RF+  G  
Sbjct: 271 LAVT-------LNLPGRHNVQNALAAIAVATELNVDDAAIQRALAGFTGVGRRFQRYGEV 323

Query: 351 TNSRGGRIYV--DYAH 364
               GG   +  DY H
Sbjct: 324 AAHHGGHFTLIDDYGH 339


>gi|255535504|ref|YP_003095875.1| cyanophycin synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341700|gb|ACU07813.1| Cyanophycin synthase [Flavobacteriaceae bacterium 3519-10]
          Length = 876

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 139/346 (40%), Gaps = 40/346 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT---TPSPIYLAKA 173
           I+AVTGT+GK++    +  I + +G   +++G T++   + Q+  LT   T  PI    A
Sbjct: 484 IIAVTGTNGKTTTTRLIAHIVKNNG---YRVGFTTSDGIYIQNTMLTKGDTTGPI---SA 537

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQAYFNAK 230
              L    V    +E +  G+ +  L       G  TN+  DH+   D H  +       
Sbjct: 538 EFILKDPTVEFAVLETARGGILRSGLGFSSCDIGVLTNIKEDHLGMNDIHNLKD--LTKV 595

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIH 286
            R+  + + K   +++ ADD YS  +M    ++   + S+     Y  KF    K+  ++
Sbjct: 596 KRVVLDAVKKGGWSVLNADDEYSMRLMPDL-DSKIAIFSLDENNEYIRKFAKEGKITCVY 654

Query: 287 NKQQVTIS--------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +  +TI         V+             F + N L A       G     +   L  
Sbjct: 655 EEGFITIKKGEWKIRVVKAHSVPITMEGKARFMISNVLAATLATYLHGFAIEDIANSLRT 714

Query: 339 L----HVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           L     + PGR   F+F   N     + +D+AH  +  E I   ++ + S + I +    
Sbjct: 715 LIPSAALTPGRLNIFKFKKFN-----VLIDFAHNPSGYEAIEDYLKNVDSPKKIGIISGV 769

Query: 392 GDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGI 436
           GDR        GKIA  + D I I  + + R    E+I   +I GI
Sbjct: 770 GDRRDEDIMQCGKIAGRMFDHIIIRNEKHLRGRTEEQINGLVISGI 815


>gi|162329635|ref|YP_470341.2| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli CFN 42]
 gi|109892728|sp|Q2K6C2|MURC_RHIEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 471

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI S  + + L     V  RF   G    G +I+ D
Sbjct: 278 LVMPMPGRHNISNATAAIAVANRLGISSEDIAKGLASFGGVKRRFTLTG-EWNGVQIFDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +LK  R    GRII V
Sbjct: 337 YGHHPVEIKAVLKAAREACKGRIIAV 362


>gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
 gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
          Length = 519

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 143/368 (38%), Gaps = 63/368 (17%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-- 92
           SDSR ++ G +FVAI G + DGH F+ +A   GA   +V               + P+  
Sbjct: 45  SDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALVQHEV-----------DAPVAQ 93

Query: 93  LVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +VV +T   L L      A+R     P  ++ +TG+ GK++    +  +          +
Sbjct: 94  IVVPDTVDALGLLAKANIAARRTVGTPFTLIGITGSVGKTTTKDLMAALLS-------TL 146

Query: 148 GPT-STISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKL 204
           GPT + + SF  +N +  P + + + +   +  ++ G +HV         +  RL  I  
Sbjct: 147 GPTVAPVGSF--NNEIGLPLTALKVGRDTRFFVAEMGASHVG--------EITRLTTIAP 196

Query: 205 --IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             IA     +G  H+    + +    AK  + + L+P +  A++ ADDA+   +   A  
Sbjct: 197 PDIA-VVLKVGCAHLGEFGSVERIAQAKSEIVQGLVP-DGLAVLNADDAHVATMAPLAPQ 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------------- 305
               V   G  G         A   K     + + +  D   P                 
Sbjct: 255 G--HVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLA 312

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYA 363
           + G   V NAL AA +   +G+    + E L +   +      V T  RGG  +  +D +
Sbjct: 313 IRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDS 372

Query: 364 HTSNSLEM 371
             +N   M
Sbjct: 373 FNANPDSM 380


>gi|262190386|ref|ZP_06048646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
 gi|262033726|gb|EEY52206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
          Length = 440

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 147 ------ALDLISPDVELYV-LELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G +      +   A H
Sbjct: 198 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFGVEQA---AQFSLAQH 246

Query: 287 NKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++  ++   ++  F+      L G   V N L    L  + G++  L L+ L+    +
Sbjct: 247 QGREYLVA---RNEAFMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL 303

Query: 343 PGRFEFVGTN 352
             R + V  N
Sbjct: 304 THRCQVVADN 313


>gi|255020011|ref|ZP_05292084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970540|gb|EET28029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 454

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 111/276 (40%), Gaps = 36/276 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I A+TG++GKS+V + + ++ + +G               A    L TP       AL  
Sbjct: 111 IAAITGSNGKSTVTTLLGEMAKAAG------------RRVAVGGNLGTP-------ALDL 151

Query: 177 LSSQGVTHVSV---EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L   G     +   E SS  L  H    ++    +  NL  DH+D+H   +AY  AK R+
Sbjct: 152 LPEAGAPEPELYVLELSSFQL--HYCHALRPRVAAILNLSPDHLDWHGDMEAYLAAKARI 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  +   E   ++   +  + + +     AG  +   G+  +        A+H      +
Sbjct: 210 FRTM--GEGDTLVLNGEDPALQSLPAKAPAGVEIRRFGHTPQLDAWADDLALHWPSAAPM 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +   D      LPG+    N L AA +  A+ +    + +       +P R ++V    
Sbjct: 268 PL--ADIH----LPGKHNGENVLAAALMANALNLPETAIRQAAADFRGLPHRLQWVARV- 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            GG  Y D +  +N L   L+ I+ +  G ++++ G
Sbjct: 321 -GGVDYYDDSKGTN-LGASLRAIQAL-PGPLVLILG 353


>gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 138/347 (39%), Gaps = 40/347 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++++ G +FV I+  K DGH ++ +A+  GA A +   +Y       T   
Sbjct: 32  EIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDNGAVASLWKKSY------GTPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141
             PI+ VD+T   L   A     +    ++ +TG++GK++V   +  I        +  G
Sbjct: 85  GIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYKVHKTKG 144

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + QIG   TI    ++         +L   +       + ++S  A            
Sbjct: 145 NFNSQIGLPLTILEMERNTE-------FLILEMGMSEKGQIRNLSRIAQPD--------- 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +G+ H++   +++    AK+ + + L  +E+   +Y  D        +  
Sbjct: 189 ----VAVITMIGQSHLETLGSRKEIAKAKLEIIDWL--RENGLFLYNGDEPLLSRNNKTS 242

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +  C+      +     L       ++  V   +      +  PL G+  ++N +V   +
Sbjct: 243 SVNCKTFG---EKDTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                +    + E L+++++   RF+F+ T   G  I  D  + S S
Sbjct: 300 GQFYKVPIEKIQEALQQINITKMRFQFL-TAKTGFTIINDAWNASPS 345


>gi|307566043|ref|ZP_07628501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
 gi|307345231|gb|EFN90610.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
          Length = 441

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 150/369 (40%), Gaps = 37/369 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G IF+A+ G   +G+ F   A+  G   AIV  S Y+  D       N  
Sbjct: 16  VTTDSRNCPKGSIFIALKGASFNGNAFAKTALENGCSYAIVDESKYAEPD-------NER 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I++V +        A          ++ +TGT+GK++    +      S + + +     
Sbjct: 69  IILVSDALIAYKELAREHRRSMNIPVIGITGTNGKTTSKELI------SAVLAEKYKVHH 122

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIAGSFT 210
           T+ ++  D        + + + L  ++++    V    +SH  D  +L   ++   G  T
Sbjct: 123 TLGNYNND--------VGVPRTLLEMTTKDEIAVIEMGASHPTDIKKLVTYVEPTCGLIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H++   + +     K  L++ L  K   A+++ +++    V         R+++ 
Sbjct: 175 NVGRAHLEGFGSFEGVKKTKGELYDYL--KAHNALLFLNESNPDLVEMATERNFDRIITY 232

Query: 271 G------YQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYNALVAAGL 321
           G       +G+ I          +  +++  E      ++    L G + + N L A  +
Sbjct: 233 GQDDTADVKGEVISCCPFLKFSWQAALSLGTEQVFSAIYEVQTNLIGAYNLDNMLAAVTI 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +  G++   +   LE       R + + T  +   + VD Y    +S++  ++N R + 
Sbjct: 293 GLHFGVEPHKICHALESYTPTNNRSQLIKT--KDNNLIVDAYNANPSSMKAAIENFRLME 350

Query: 381 SGRIIVVFG 389
               + + G
Sbjct: 351 VKNKMAILG 359


>gi|239617752|ref|YP_002941074.1| UDP-N-acetylmuramate/alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506583|gb|ACR80070.1| UDP-N-acetylmuramate/alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 445

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 73/184 (39%), Gaps = 15/184 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH++++        A    F + +   +   IY ADD  SK +       G  + 
Sbjct: 174 TNVRGDHLEHYNNSLKNLQAHFHYFAKRI---TGIFIYNADDEASKRLF-----GGMGIT 225

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG 326
                G +   K+ C    KQ   +   GK     F   LPG   VYNA     +   +G
Sbjct: 226 FGENDGDYRFTKRTCD-RTKQSFEV-YHGKHSLGRFTLNLPGIHNVYNATAVIAMAAELG 283

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR-I 384
           I   +V   L     V  RF F G +      ++ DYAHT + +   ++  +     R I
Sbjct: 284 IPMDIVKNSLATFKSVDRRFTFRGFSEEKNLYFIDDYAHTPDEIRNTIRGAKESYPDRKI 343

Query: 385 IVVF 388
           IVVF
Sbjct: 344 IVVF 347


>gi|152996626|ref|YP_001341461.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
 gi|189028999|sp|A6VYJ7|MURC_MARMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150837550|gb|ABR71526.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
          Length = 473

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 120/333 (36%), Gaps = 48/333 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS+A + Q+          I +V        L   R       + +AV GT GK+
Sbjct: 76  AHVIVVSTAINEQNPEIIWGKEHRIPIVRRAEMLAELMRYR-------HGIAVAGTHGKT 128

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   +G +     PT     F    RLT+      A A + L S    ++  
Sbjct: 129 TTTSLMASILAATGEA-----PT-----FVIGGRLTS------AGANAQLGSSA--YLVA 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA         L    +I    TN+  DH+D +             F   LP    A++ 
Sbjct: 171 EADESDASFLHLQPQTVIV---TNIDEDHMDTYDGDFEKVKHTFIEFVHNLPFYGLAVLC 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-------YQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            DD   +E++         VL+ G       Y  + +   + C     +      EG+  
Sbjct: 228 VDDENVREILPTLSRP---VLTYGIDQEADFYATEIVQTGRYCEFLAHRP-----EGEPL 279

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGG 356
               P+PG   V NAL    +   +G+D++ +   L     V  RF+        N    
Sbjct: 280 KIRLPMPGRHNVLNALATIAVATDLGVDASAIQAGLMGFEGVGRRFQEQKPLALPNGSNV 339

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               DY H  + +   +K IR      R+++V+
Sbjct: 340 MFVDDYGHHPSEVLATIKAIRAGWPEKRLVMVY 372


>gi|323494203|ref|ZP_08099317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
 gi|323311544|gb|EGA64694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
          Length = 451

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 107/271 (39%), Gaps = 30/271 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVG--GVLGNFGVSARLGE-SVFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           R F  L   +P     +    D   ++V+ R    GC      + GK    +    I + 
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDMDLEDVLSR----GCWS-ETEFSGKQGDWQAEKLIADG 256

Query: 289 QQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q  +  +G++   + + L G+  V NAL+A      +G+   L  E L K      R E
Sbjct: 257 SQFKVFFQGEEVGIVNWDLVGDHNVDNALMAIAAARHVGVTPDLACESLAKFINTKRRLE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             G    G  +Y D+AH   ++E+ L  +R 
Sbjct: 317 LKG-EVNGVTVYDDFAHHPTAIELTLGGLRN 346


>gi|284008381|emb|CBA74789.1| UDP-N-acetylmuramate--L-alanine ligase [Arsenophonus nasoniae]
          Length = 515

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 128/326 (39%), Gaps = 49/326 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  + +  I  ++GL      PT                   L KA    
Sbjct: 145 IAIAGTHGKTTTTAMIASIYAQAGLD-----PTFINGG--------------LVKAAGVH 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMR 232
           +  G +   + A +   D   L    L+A   TN+  DH+     D+ + +Q + +    
Sbjct: 186 ARLGTSRYLI-AEADESDASFLHLQPLVA-VITNIEADHMETYDGDFEKLKQTFIS---- 239

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV 291
            F   LP     ++  DD   + ++ +    G  + + G+     + +       N+   
Sbjct: 240 -FLHNLPFYGRVVLCIDDPVVRSLLPQI---GRYITTYGFSDDADVRITSYKQRGNQGFF 295

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T++ E + D  F+   PG     NA  A  +    GID + +L  L+K      RF+ +G
Sbjct: 296 TVARENRADLAFILNAPGRHNALNATAAIAVATEEGIDDSAILTALKKFQGTGRRFDLLG 355

Query: 351 T------NSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
                  N + G + +  DY H    ++  +K  +    + RI++VF     R    R +
Sbjct: 356 NFPLADVNGKKGSVMLVDDYGHHPTEVDATIKAAKEGWPNKRIVMVFQP--HRYTRTRDL 413

Query: 402 MGKIA--LDLADIAIVTDDNPRSEDP 425
               A  L+  D+ ++ D  P  E+P
Sbjct: 414 YDDFANILEQVDVLLMLDVYPAGEEP 439


>gi|170696722|ref|ZP_02887837.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
 gi|170138385|gb|EDT06598.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 119/312 (38%), Gaps = 47/312 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    R+   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL T   I              
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV------------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                 A +   D   L+   +I    TN+  DH+D +    A        F   LP   
Sbjct: 159 ------AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDF 300
            A++  DD   KE++        R  L+   Q + ++++   A   K   T   E     
Sbjct: 212 IAVLCVDDPNVKEILPFVSKPIIRYGLAPDAQVRAVNVE---ARDGKMHFTAMREDAAPL 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-------NS 353
           D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G          
Sbjct: 269 DIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVTSDGEP 328

Query: 354 RGGRIYV-DYAH 364
           RG    V DY H
Sbjct: 329 RGAYTLVDDYGH 340


>gi|325294545|ref|YP_004281059.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064993|gb|ADY73000.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 458

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 145/365 (39%), Gaps = 43/365 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S +  I   +GL      PT                 I +   LS L
Sbjct: 107 VAVAGTHGKTTTSSMIATIFHIAGLK-----PT-----------------ILVGGRLSIL 144

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKL-IAGSF---TNLGRDHIDYHQTQQAYFNAKMRL 233
              GV   S + +    +    DG  L +  +F   TN+  DH+DY+ + +    A +  
Sbjct: 145 G--GVNAQSGDGNWLVAEADESDGTFLKLTPTFSVITNIDADHVDYYGSFENLKEAFLD- 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT 292
           F   +       +  +    KE++   +    R L  G+  KF ++ K++  +       
Sbjct: 202 FANRVSFYGKVFLCGECQNVKEIVGSIYK---RKLIYGFSEKFDLYAKEIVPVGLGTIFD 258

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + K    +   +PG+  + NAL A G+ + +G+    + E LE       R E  GT
Sbjct: 259 VYYKSKKLGRVKLNVPGKHNILNALGAIGVSLEVGVSFNQIAESLEMFRNANRRMELKGT 318

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK---IAL 407
              G     DYAH    +E   K ++ +    RI+V+F         +  ++ K     L
Sbjct: 319 -VNGITFIDDYAHHPTEIETSYKALKSSFPDRRIVVLF---QPHRFSRTNLLWKEFVKVL 374

Query: 408 DLADIAIVTDDNPRSEDPEK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              D   ++D  P  E P K I A+ +    G +  G+  +A RT    L   DV +  G
Sbjct: 375 KEIDNLFISDIYPAGEKPIKGINAKNLARECGAVYCGSLKKACRTIKLELKPGDVFLSMG 434

Query: 467 KGHET 471
            G  T
Sbjct: 435 AGDVT 439


>gi|315604425|ref|ZP_07879491.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315314131|gb|EFU62182.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 481

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 25/134 (18%)

Query: 105 FASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           FA RL  + P      L VTGT+GK++    + QI   +G+   ++G   T  + A D+ 
Sbjct: 99  FAWRLQEEGPHAGRPWLTVTGTNGKTTTVGMLGQILTSAGVRVQEVGNIGTPITRAIDSD 158

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                                   +VE SS  L  H    +  +A    N+  DH+D+H 
Sbjct: 159 AEV--------------------FAVELSSFQL--HTTRSVSPLASVCLNVDSDHLDWHG 196

Query: 222 TQQAYFNAKMRLFE 235
           + QAY   K R++E
Sbjct: 197 SAQAYAADKARVYE 210


>gi|297569452|ref|YP_003690796.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925367|gb|ADH86177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 497

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 145/376 (38%), Gaps = 77/376 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTGT+GKS+V + V ++ + +G + F  G             L TP   YLA     
Sbjct: 124 VIAVTGTNGKSTVTTLVGELLRAAGRNVFVGG------------NLGTPLCEYLA----- 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-------NLGRDHIDYHQTQQAYFNA 229
              Q      +E SS  LD          AG F+       N+  DH+D +    AY  +
Sbjct: 167 -GPQEADWAVLEVSSFQLDS---------AGKFSPDIAVLLNISPDHLDRYPDYAAYAAS 216

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           K R+      +E  A+I  DD    E+++   A     RV   G +G    L        
Sbjct: 217 KWRIVAN-QGREQWAVINRDD---PEILRLLAAGPPASRVFGFGGRGMAGPLA------- 265

Query: 288 KQQVTISVEGKDFDFL-------------FPLPG-----EFQVYNALVAAGLCIAIGIDS 329
             Q   +  G   D L             +PLP      E    NAL A       G   
Sbjct: 266 ANQSREAAPGPPVDGLRLCLTQEDEHCEEYPLPANELAVEPNRQNALAAVLAARLAGCPP 325

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A V   L     +P R   V T + G R Y D   T  ++  ++  ++ +  G ++++ G
Sbjct: 326 AAVGPALAAFQALPHRLALVATVA-GVRYYDDSKAT--NIGAVISALQGL-PGPVVLIAG 381

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G D+    R ++  I   +  + ++          EK+RA +   +P   E  +   A+
Sbjct: 382 -GLDKGGDYRLLLPAIKEKVRAVVLIGSAR------EKMRAALAPAVP-VTEAADLPSAV 433

Query: 450 RTAIEMLNKQDVLVVA 465
           R A ++    + ++++
Sbjct: 434 RIATQLAAAGEAVLLS 449


>gi|291288105|ref|YP_003504921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885265|gb|ADD68965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 416

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 50/283 (17%)

Query: 112 KHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           K P +  ++AVTGT+GKS+V + + QI ++ GL +   G             +  P    
Sbjct: 78  KRPTDTVVVAVTGTNGKSTVTTLIAQILKKCGLEAVACG------------NIGLP---- 121

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            A+A++   + G   V + +   G+ QH      ++    TNL  DH+D ++    Y + 
Sbjct: 122 YAEAVTG-GAYGAYVVELSSFQTGMLQHFSADCVVV----TNLAEDHMDRYRDMDDYADD 176

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           KM L   L P+    +I  +D Y  +          RVL     G+       C      
Sbjct: 177 KMNLLRFLKPEGR--LIIENDEYLVQKSSVYKGDTVRVLPEVNNGRLDFGHFYCTTDK-- 232

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                         FPL GE  + N   AL+AA     +  D   + E+L  L     R 
Sbjct: 233 --------------FPLKGEHNLLNLSFALLAADSIAGLEGDVTYLTENLIGLE---HRC 275

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           EF    +  G  Y++ +  +N +   L  ++ +  G +I++ G
Sbjct: 276 EFAAEIN--GVEYINDSKGTN-IHSTLTALKGLPEGIVIILGG 315


>gi|94501895|ref|ZP_01308405.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
 gi|94425948|gb|EAT10946.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
          Length = 485

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 124/331 (37%), Gaps = 44/331 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A ++++          I +V        L   R +G      +AV GT GK+
Sbjct: 79  ANVVVVSTAINVENPEIQYAQQNRIPIVRRAEMLAELMRYR-HG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  I     L+     PT     F    RLT+           YL ++     + 
Sbjct: 132 TTTSLVASI-----LAEGDKDPT-----FVIGGRLTSAGTNAQLGGSRYLVAE-----AD 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPA 244
           E+ +  L       ++ +    TN+  DH+D   T    FN   + F E L   P    A
Sbjct: 177 ESDASFLH------LQPMVSIVTNIEADHMD---TYGGDFNRVKKTFIEFLHNLPFYGLA 227

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  +D   +E++         V++ G+      +    K   I+    V    + KD  
Sbjct: 228 VLCIEDETIREILPEVSRP---VVTYGFSDSADYYAQEIKQEGIYTSFTVKRPGDNKDLQ 284

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRI 358
               +PG   V NAL A  +    GI    ++  LEK   V  RF+  G          +
Sbjct: 285 IRLRMPGRHNVLNALSAIAVATDEGIADDAIIRALEKFQGVGRRFQICGEYPLQDDSVML 344

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             DY H    + + +  IR      R+++VF
Sbjct: 345 VDDYGHHPTEVAVTIDAIRKGWPEKRLLMVF 375


>gi|81428460|ref|YP_395460.1| putative polylpolyglutamate synthase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610102|emb|CAI55151.1| Putative polylpolyglutamate synthase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 434

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 305 PLPGEFQVYNALVA-AGLCIAIGI-DSALVLEHLEK--LHV-VPGRFEFVGTNSRGGRIY 359
           PL G++Q+ NA VA    C  + +    L ++ L++   HV  PGRFE V        I 
Sbjct: 259 PLMGDYQIENAAVALETFCQYLALTQQPLDIKTLKRGLAHVSWPGRFEKVNDEP---LII 315

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVTD 417
           +D AH    +E ++K  +       I ++FG  GD+   G  P + ++A  L  +     
Sbjct: 316 LDGAHNPAGVEQLVKTAKHQFKHQDIYILFGALGDKSLAGMLPELNQLATHL--VLTTVP 373

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DNPR+    +  A + + IP    + +   A+ T +  L+  DVL+V G
Sbjct: 374 DNPRAATQAQ-YAAVDNTIPF---EADWPVALTTMVSELSADDVLLVTG 418


>gi|319944702|ref|ZP_08018966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741951|gb|EFV94374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 471

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 8/108 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   +S+DSR ++ G +++A+ G++ DGH FI  AI  GA A++       + F   +R 
Sbjct: 23  RFTGISTDSRTVRPGDLYIALRGDRFDGHAFIDAAIDAGAAAVLT------EVFPERVR- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             P L V +TR+ L   A     +    ++AVTG++GK++    +  I
Sbjct: 76  -VPTLWVPDTRRALGALAGGWRRRFECPLIAVTGSNGKTTAKEMIAAI 122


>gi|229521234|ref|ZP_04410654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
 gi|229341766|gb|EEO06768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 127 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 173

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 174 ------ALDLISPDVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 224

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 225 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 263

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 264 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDA 323

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 324 LKSYTGLTHRCQVVADN 340


>gi|254454584|ref|ZP_05068021.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
 gi|198268990|gb|EDY93260.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
          Length = 471

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 10/183 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+++  T +   +A    F   +P    A+   DD+  + ++ +  +   RV++
Sbjct: 191 TNIDPEHMEHWGTIE-NLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLVGKITDR--RVVT 247

Query: 270 VGYQGKFIHLKKVCAIHNKQ----QVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA 324
            G+  +   ++ +   + K      V +  EG    D   P+PG+  V NAL A  +   
Sbjct: 248 YGFNAQ-ADVRAINLTYKKGVAHFDVVLQNEGLTIVDCALPMPGDHNVSNALSAIAVARY 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+ +  +   L     V  RF  VG    G  I  DY H    +  +LK  R  + GRI
Sbjct: 307 LGMKTEEIRTALTAFKGVGRRFTRVG-EVDGVTIIDDYGHHPTEITAVLKAARQASEGRI 365

Query: 385 IVV 387
           I V
Sbjct: 366 IAV 368


>gi|46199025|ref|YP_004692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermus
           thermophilus HB27]
 gi|55981051|ref|YP_144348.1| UDP-N-acetylmuramoylalanine--D-glutamiate ligase [Thermus
           thermophilus HB8]
 gi|62900672|sp|Q5SJD2|MURD_THET8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900686|sp|Q72JQ1|MURD_THET2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46196649|gb|AAS81065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermus
           thermophilus HB27]
 gi|55772464|dbj|BAD70905.1| UDP-N-acetylmuramoylalanine--D-glutamiate ligase [Thermus
           thermophilus HB8]
          Length = 417

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 33/142 (23%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTP 165
           Y   P  I+ +TGT+GK+S   F   + +  GL + + G    P  ++   A+       
Sbjct: 89  YRLSPTPIVGITGTAGKTSTTLFTAHLLRAHGLRAREGGNVDPPLVSVVDEAE------- 141

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                  A++ LSS                  R+   +       NLG DH+D H T +A
Sbjct: 142 ------VAVAELSS--------------FQLERVHAFRPRVAVLLNLGVDHLDRHGTVEA 181

Query: 226 YFNAKMRLFEELLPKESPAIIY 247
           Y  AK+ L + L P++  A++Y
Sbjct: 182 YHAAKLNLLKNLTPED--ALVY 201


>gi|167838002|ref|ZP_02464861.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           MSMB43]
          Length = 465

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 119/294 (40%), Gaps = 47/294 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYG-KHPENILAVTGT 123
           +GA A+VVS+A         +RS+ P +L     R  +   A  L      +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    ++S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297
           P    A++  DDA  ++++         V+  G+     +  + V A   +   T+  +G
Sbjct: 208 PFYGSAVVCIDDANVRQIVPLISKP---VVRYGFSADAQVRAENVEARDGRMHFTVLRDG 264

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G
Sbjct: 265 REPLPVVLNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYG 318


>gi|24375706|ref|NP_719749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
 gi|30316031|sp|Q8E9P6|MURD_SHEON RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24350640|gb|AAN57193.1|AE015855_4 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
          Length = 439

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 108/268 (40%), Gaps = 43/268 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GK++V + V ++ + +G++             A    
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKTTVTTLVGEMLREAGIA------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           +  P       AL  L       V +E SS  L+  H L+    +A +  N+  DH+D +
Sbjct: 144 IGIP-------ALDLLKENADIFV-LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               AY  AK+RL+      +S +II+  DDA +        N+       G +      
Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K     H   ++    E         L G     N L A  L  A+G+D  ++       
Sbjct: 248 K---IYHGHSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVDKQVMANVARTF 297

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +  R E VG   +GG  YV+ +  +N
Sbjct: 298 TGLSHRCEVVGV--KGGVTYVNDSKATN 323


>gi|91977859|ref|YP_570518.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
 gi|123762580|sp|Q133X2|MURC_RHOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91684315|gb|ABE40617.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 136/342 (39%), Gaps = 66/342 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GADVLVVSTA---------IKRDNPELLAARAQRIPVVRRAEMLAELMRLKSCIAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S V  +     L +  + PT      I+++  + RL                  
Sbjct: 117 GKTTTTSMVAAL-----LDAGDVDPTVINGGIINAYGTNARLGAGD-------------- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
               + VEA     D+     +KL A     TN+  +H+D+ +T  A  +A  R+F E +
Sbjct: 158 ---WMVVEA-----DESDGTFLKLPADVAVVTNVDPEHLDHFKTFDAVQDA-FRIFVENV 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTIS 294
           P    A++  D    + ++ +  +   R+++ G       + + LK   A       T  
Sbjct: 209 PFYGFAVMCIDHPVVQALVGKIEDR--RIITYGENPQADARLLDLKPSGA-----GSTFK 261

Query: 295 VEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           V  +D          D + P+PG     NA+ A  +   +G+    + + L     V  R
Sbjct: 262 VAFRDRKAGTAHEITDLMLPMPGPHNALNAVAAIAVAHELGLSDDTIRKALAAFGGVRRR 321

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           F   G    G  I  DY H    +  +LK  R  TS ++I V
Sbjct: 322 FTKTG-EWNGVTIIDDYGHHPVEIAAVLKAARQSTSAKVIAV 362


>gi|229514032|ref|ZP_04403494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
 gi|229349213|gb|EEO14170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 127 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 173

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 174 ------ALDLISPDVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 224

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 225 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 263

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 264 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDA 323

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 324 LKSYTGLTHRCQVVADN 340


>gi|254230417|ref|ZP_04923797.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|151937050|gb|EDN55928.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 484

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 112/284 (39%), Gaps = 44/284 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  EL+P+ S  +I     +S++   R  N        G QGKF  ++K  A    
Sbjct: 234 IDDPVVRELIPRISRQVITY--GFSEDADVRIEN----YRQEGQQGKFTVVRKGRA---- 283

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                     + D    +PG     NA  A  +     I+   +L+ +        RF+ 
Sbjct: 284 ----------NLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDH 333

Query: 349 VGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           +G    G     +  DY H    +++ +   R+     R++++F
Sbjct: 334 LGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIF 377


>gi|289668052|ref|ZP_06489127.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 452

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 135/345 (39%), Gaps = 53/345 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           + P  I+  A  +VV +A S        R N  +  V+D  R++ S    L    L G+ 
Sbjct: 54  YAPSNISPDAIDVVVGNALS--------RGNPAVEAVLDAGRRYTSGAQWLAEQVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + LAV GT GK++  + +  + + +G +     P   I   A+D              
Sbjct: 105 --DTLAVAGTHGKTTTTTILSYLLEAAGRA-----PGFLIGGVAEDF------------G 145

Query: 174 LSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +S    QG   V VEA  +       + +    + +     NL  DH D      A    
Sbjct: 146 VSARLGQGCEFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAI--- 201

Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCA 284
             R F  L+   P     I+  +DA+  EV+      GC   V   G+        ++ A
Sbjct: 202 -QRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTPVERFGFDASLDWSARLIA 256

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   +    +     +PL G   V N L A     A+G+D A+V+  L +   V  
Sbjct: 257 ADGSAFAVLHRGVEIGQVQWPLVGRHNVLNGLAALAAVHAVGVDPAMVMPALARFQSVKR 316

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           R E +G N+ G  +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 317 RLEVIG-NAHGVTVYDDFAHHPTAIATTLQGLRAKVGAARVVVAM 360


>gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
 gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
          Length = 477

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS      D +        +
Sbjct: 26  VSIDTRTIAPGDLFVALKAAR-DGHDFVAQALEKGAAAALVSHVPEGVDPAR-------L 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVVD+ +  L         +    ++AVTG+ GK+S    ++ +    G
Sbjct: 78  LVVDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKTSTKEMLRCVLGAQG 126


>gi|296876961|ref|ZP_06901005.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431996|gb|EFH17799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 449

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 151/360 (41%), Gaps = 62/360 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQ---RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAK 172
           I+ +TG++GK++  + + ++     + GL S  IG P S ++  A +  +       L  
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFPASQVAQTATEKEV-------LVM 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            LS     G+     E             I +I    TNL   HIDYH + + Y  AK  
Sbjct: 167 ELSSFQLMGIEAFHPE-------------IAVI----TNLMPTHIDYHGSFENYVAAKWN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-------I 285
           L + +  K+   + +  D  +KE+  +      RVL       F  ++KV         +
Sbjct: 210 LQKNMTEKDVIVLNFNQD-LAKELATKTK---ARVLP------FSTIEKVDGAYLEDGLL 259

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             K +V +  +         +PG   V NAL    +     +++ ++ E L     V  R
Sbjct: 260 KFKGEVVMRADE------LGVPGSHNVENALATIAVAKVRSVENEVIKETLSAFGGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            ++V    +G + Y D    S ++    K +    + ++I++ G G DR      ++  I
Sbjct: 314 LQYV-DEIQGVKFYND--SKSTNILATQKALSGFDNNKVILIAG-GLDRGNEFDELVPHI 369

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              L ++ I+ +  PR +     RA    G+P +++  +  +A + A ++ +  DV++++
Sbjct: 370 T-GLKEMVILGESAPRVK-----RAADKAGVP-YVDAADVADATKKAFDLASPGDVVLLS 422


>gi|256821912|ref|YP_003145875.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
 gi|256795451|gb|ACV26107.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
          Length = 444

 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 26/134 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V   V ++   SG  +   G             +  P       AL  
Sbjct: 109 VIAITGSNGKSTVTDLVGELINASGKKALVGG------------NIGVP-------ALDL 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  +G  +V++E SS  L+  R   ++ +A +  N+  DH+D ++  Q Y +AK  ++  
Sbjct: 150 LKLEG-DYVALELSSFQLESTR--SLEPVAATVLNVSEDHLDRYKNYQEYIDAKRSIY-- 204

Query: 237 LLPKESPAIIYADD 250
              K    ++ ADD
Sbjct: 205 --AKARTCLVNADD 216


>gi|126701142|ref|YP_001090039.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile 630]
 gi|254977143|ref|ZP_05273615.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-66c26]
 gi|255094472|ref|ZP_05323950.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile CIP
           107932]
 gi|255102728|ref|ZP_05331705.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-63q42]
 gi|255308549|ref|ZP_05352720.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile ATCC
           43255]
 gi|255316223|ref|ZP_05357806.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-76w55]
 gi|255518885|ref|ZP_05386561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-97b34]
 gi|255652064|ref|ZP_05398966.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-37x79]
 gi|260685038|ref|YP_003216323.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260688696|ref|YP_003219830.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
 gi|306521800|ref|ZP_07408147.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-32g58]
 gi|123066482|sp|Q181B7|MURC_CLOD6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115252579|emb|CAJ70422.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           difficile]
 gi|260211201|emb|CBA66689.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260214713|emb|CBE07377.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 157/410 (38%), Gaps = 60/410 (14%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138
           ++A +  +   LV    +  L +  +   G   +  +N +AV+GT GK+S  S +  I +
Sbjct: 66  YTAAVHPDNEELVAAKEKNKLVMNRATFLGQIMREYKNSIAVSGTHGKTSTTSMLSTIFE 125

Query: 139 RSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            + L      PT  +    S    N     S  ++ +A  Y+ S              L+
Sbjct: 126 YADLD-----PTILVGGNLSMIGGNVKIGNSNHFITEACEYVDSF-------------LN 167

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            +    I L      N+  DH+DY         A    F +LLP E   II  DD    +
Sbjct: 168 FNPKISIVL------NVEEDHLDYFSGIDE-IKASFNKFGKLLPPEGYFIINGDDENIDD 220

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDF-DFLFPLPGEFQV 312
           ++   ++    ++  G       + K     N       I  EG+D  +F   + G   +
Sbjct: 221 IL---YDVKATIIKYGRDSDNDAVIKDIHFDNSGHGIFRIEYEGRDLGEFELSVYGLHNI 277

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YNA  A    +  GID   + ++++    V  RFE  G   +   +  DYAH    L+  
Sbjct: 278 YNASSAIMAALVSGIDLETIRKNIKIYKGVGRRFETKGY-YKNALVVDDYAHHPTELKAT 336

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTD-DNPRSEDPEKIR 429
           L   + +    +  +F          + ++G+   A   AD  I+TD    R +DP  I 
Sbjct: 337 LAAAKKLKKSTLWCIFQP--HTYTRTKSLLGEFSEAFYAADKVIITDIYAAREKDPGDIH 394

Query: 430 AEIIHGIPGFIEK--GNRIEAI---------RTAIEMLNKQDVLVVAGKG 468
           ++        +EK   N ++AI         +   E +   D+++ AG G
Sbjct: 395 SK------DLVEKLYQNNVDAIYIKEFEDIVKYLRENVKDNDLVITAGAG 438


>gi|328950957|ref|YP_004368292.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451281|gb|AEB12182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 422

 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 27/158 (17%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           Y   P  ++ VTGT+GK S   F   + + SGL +   G                  P+ 
Sbjct: 93  YRHVPTPLIGVTGTAGKGSTTLFTAHLLRASGLRAVAGG--------------NLDPPLV 138

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                + ++   ++   +E   H   +              NLG DH+D H+T +AY  A
Sbjct: 139 DVVEDAEVAVVELSSFQLERVVHFAPR---------VAVLLNLGVDHLDRHRTPEAYHQA 189

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           K+ L + L  ++  A++Y  +A    V + AH    R+
Sbjct: 190 KLNLLKNLTDQD--ALVY--NAADPRVRQAAHRTPARL 223


>gi|308048069|ref|YP_003911635.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
 gi|307630259|gb|ADN74561.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
          Length = 486

 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D +             F   LP    A++  DD   + ++ R    G R+++
Sbjct: 193 TNIEPDHMDTYGGDINKLYDTFVDFLHNLPFYGVAVLCLDDPGVQVILPRV---GRRIVT 249

Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G+     +  +    +  + Q T+    +D    +  LPG   V NAL A  + +  G+
Sbjct: 250 YGFHPDADVRAEDFVQVGTRTQFTLHRPNRDPLPLVLNLPGRHNVQNALAAIAVAMEEGV 309

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG-GRIYV--DYAHTSNSLEMILKNIR-TITSGR 383
           +   +   L++   +  RF+  G    G G++ +  DY H  + + + +K  R +    R
Sbjct: 310 EDDAIEAALDQFQGIGRRFQQYGEFDTGAGKVLLVDDYGHHPSEVAVTIKAARASWPDRR 369

Query: 384 IIVVF 388
           +++VF
Sbjct: 370 LVMVF 374


>gi|269103565|ref|ZP_06156262.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163463|gb|EEZ41959.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 451

 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 111/280 (39%), Gaps = 26/280 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ AS +  I +  G +  F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVMAVSGTHGKTTTASMLAWILEDCGYNPGFLVG--GVLGNFGVSARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    I        NL  DH D     ++      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLI------MNNLEFDHADIFDDLKSI----Q 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R F  L+ +  P        +    +      GC    + Y G   H +    + +  Q 
Sbjct: 202 RQFHHLV-RTVPGNGRILAPHGVAAIDETLEMGCWS-ELEYIGGDGHWQAEKLMADGSQF 259

Query: 292 TISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++ ++G+    + +PL G+  V NAL+A      +G+   L  E L        R E  G
Sbjct: 260 SVLLDGEKVGVVNWPLVGDHNVNNALMAIAAARHVGVTPDLACEALGNFINTKRRLELKG 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVF 388
               G ++Y D+AH   ++E+ L  +R       RI+ V 
Sbjct: 320 -EVNGVKVYDDFAHHPTAIELTLGGLRAKVGADARILAVL 358


>gi|49474455|ref|YP_032497.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella quintana str.
           Toulouse]
 gi|59798260|sp|Q6G125|MURC_BARQU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49239959|emb|CAF26364.1| UDP-N-acetylmuramate--alanine ligase [Bartonella quintana str.
           Toulouse]
          Length = 475

 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+ R+H+D++ +  A   A  R F E +P    A++  D    + +  R  +       
Sbjct: 181 TNIDREHLDHYGSFCAVREA-FRQFVENVPFYGFAVLCLDHPEVQSLASRIDDRWVITYG 239

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R L++   G+  H          ++     E K+   + P+ G+  V NA  A
Sbjct: 240 TNPQADIRFLNLSMDGQKTHFDVFI---RSRKTGKETELKNL--VLPMSGQHNVSNATAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +GI +  + + L +   V  RF   G+  RG  I+ DY H    ++ +L   R 
Sbjct: 295 IAIAHELGISNESIKKGLAEFGGVKRRFTQTGS-WRGIEIFDDYGHHPVEIKAVLYAARE 353

Query: 379 ITSGRIIVV 387
              GR+I +
Sbjct: 354 SAKGRVIAI 362


>gi|320531618|ref|ZP_08032560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136147|gb|EFW28153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 483

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 12/121 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           V +DSR    G +FVA+ G + DGH  +  A A GA   +VS   + +   +  R+  P 
Sbjct: 31  VVTDSRQATEGSLFVAVHGERTDGHAHLGSAGALGAVGAIVSDLEAARSGLSQGRTEEPS 90

Query: 92  --ILVVDNTRKFLSLFA-------SRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
             +++V++T   L   A        R      E   ++A+TG+ GK++     +Q+   S
Sbjct: 91  MGLVLVEDTVTALGALARTHLEELRRAAADRGERLTVVAMTGSVGKTTTKDLTRQLLAPS 150

Query: 141 G 141
           G
Sbjct: 151 G 151


>gi|284991684|ref|YP_003410238.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
 gi|284064929|gb|ADB75867.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
          Length = 489

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 125/338 (36%), Gaps = 63/338 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTG 122
           A+ +VVS+A         IR + P L     R    L      A+ + GK     +AV G
Sbjct: 79  ADTVVVSTA---------IREDNPELAAARERGLRVLPRAVALAAVMAGKRS---VAVAG 126

Query: 123 TSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA------LS 175
           T GK+S  S +    Q  G+  SF IG     S     N       +++A+A        
Sbjct: 127 THGKTSTTSMLTVAVQACGVDPSFAIGGDLNESG---SNAHAGGGDVFVAEADESDRSFL 183

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L+  G    +VEA                         DH+D +    A   A  R  +
Sbjct: 184 LLAPHGAIVTNVEA-------------------------DHLDNYGDLAAVEAAFDRFLQ 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L P     ++ ADD  S  +      A  R              ++  +    + T   
Sbjct: 219 TLDPAGF-VVLCADDPGSARLRTVPTPARVRTYGTAEDSDL----RLVDVEVGPETTAWT 273

Query: 296 EGKDFDFL--FPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              D D L   P+  PGE    N+  A    + +G+ +  ++  L +   V  RFE  GT
Sbjct: 274 AVLDGDVLGRVPIRVPGEHMARNSAAALLAGLELGLPAEGLISGLGRFGGVHRRFELKGT 333

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVF 388
              G R+Y DYAH    +E  L+  R +  +GR++V F
Sbjct: 334 VG-GVRVYDDYAHHPTEVEAQLRAARAVAGTGRVVVAF 370


>gi|149201998|ref|ZP_01878972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
 gi|149145046|gb|EDM33075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
          Length = 478

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 138/354 (38%), Gaps = 55/354 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R ++ G +FVA+   + DGH F+ QA+A+GA A +VS           + +  P+
Sbjct: 26  VSIDTRTLKPGDLFVALNAAR-DGHEFVAQALAKGAAAALVSR------IPEGLPAEAPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-------SF 145
           L+V++ +K L         +    ++AVTG+ GK+S    ++ +    G +       + 
Sbjct: 79  LIVEDVQKGLEDLGRAARARSEARVVAVTGSVGKTSTKEMLRDVLGHQGRTHAAEASYNN 138

Query: 146 QIGPTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             G   T++    D         +     ++ L+     HV+V                 
Sbjct: 139 HWGVPLTLARMPVDTEFAVIEIGMNHPGEIAPLACMARPHVAV----------------- 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +   H++  +        K  +FE L P    A+I AD A +  +  +A    
Sbjct: 182 ----ITTVAAAHLEAFENIDGIAKEKASIFEGLEPG-GVAVINADIATTPILRAKAAQHA 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL------PGEFQVYNALVA 318
            R+LS G      H      +H+   VT+   G    +  PL      PG     NAL  
Sbjct: 237 ARILSFGTARGAHHRLLNVELHD--HVTV---GHARAWRSPLVYKVGVPGRHFAMNALAV 291

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
             +   +G D A+ +  L       GR    GT      + +D A    S+++I
Sbjct: 292 LAVAQVLGCDRAVAMADLASWAPPAGR----GTRE---ELVLDLASDGMSIDLI 338


>gi|319782849|ref|YP_004142325.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168737|gb|ADV12275.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 468

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   V NA  A  +   +G+ +  + + L     V  RF   G+   G  I+ DY 
Sbjct: 280 LPMPGRHNVSNATAAIAVAHELGLSAEAIKKGLSSFAGVKRRFTHTGSWD-GVEIFDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R+ T GR+I +
Sbjct: 339 HHPVEISAVLKAARSATQGRVIAI 362


>gi|323527434|ref|YP_004229587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
 gi|323384436|gb|ADX56527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
          Length = 475

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 150/371 (40%), Gaps = 28/371 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G++ D H F+    A+   A++V+                P 
Sbjct: 34  VSTDSRSAGPGDLFVALKGDRFDAHDFLADVAARNVSAVLVARVPDGW--------TVPA 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +TR  L   A     K    ++AVTG++GK++V   +  I   +  ++ ++   +T
Sbjct: 86  VRVADTRAGLGALARGWRRKFGMPLVAVTGSNGKTTVKEMIASIFAAAVGAAERL---AT 142

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
             +F  +N +  P  ++   A   L+   V  + +   +H  +   L  I +       N
Sbjct: 143 AGNF--NNDVGLPLTLFRLNAAHRLA---VVELGM---NHPGETSLLAKIAEPTVAVVNN 194

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             R+H ++  T +A       +   L P E  A+  A+DAY+   + R    G R++   
Sbjct: 195 AQREHQEFMATVEAVALEHASVIHALKP-EGVAVFPANDAYAS--IWRVAATGNRIIDFA 251

Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +      V    +   ++I            + G+   +NAL A    +A G+   
Sbjct: 252 LNTAERATEAAVTGTFDGGLLSIETPEGALQVSLQVLGDHNAHNALAATSAALAAGVSLD 311

Query: 331 LVLEHLEKLHVVPGRFEF----VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            +   LE    V GR +     +GT +    I   Y    +S+   +  + +  S R++V
Sbjct: 312 AIKRGLESFGAVKGRLQVKRAALGTLAGAKVIDDTYNANPDSMRAAIDVLASHASPRVLV 371

Query: 387 VFGCGGDRDQG 397
           +   G   D G
Sbjct: 372 MGDMGEVGDNG 382


>gi|241205556|ref|YP_002976652.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859446|gb|ACS57113.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 471

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+ D
Sbjct: 278 LVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GR+I V
Sbjct: 337 YGHHPVEIKAVLRAARESCKGRVIAV 362


>gi|116253047|ref|YP_768885.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|189029026|sp|Q1ME34|MURC_RHIL3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115257695|emb|CAK08793.1| putative UDP-N-acetylmuramate--L-alanine ligase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 471

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+ D
Sbjct: 278 LVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GR+I V
Sbjct: 337 YGHHPVEIKAVLRAARESCKGRVIAV 362


>gi|227082526|ref|YP_002811077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229507535|ref|ZP_04397040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229512269|ref|ZP_04401748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229519405|ref|ZP_04408848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229607041|ref|YP_002877689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae MJ-1236]
 gi|9656976|gb|AAF95546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|227010414|gb|ACP06626.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229344094|gb|EEO09069.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229352234|gb|EEO17175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229355040|gb|EEO19961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229369696|gb|ACQ60119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MJ-1236]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 127 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 173

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 174 ------ALDLISPDVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 224

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 225 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 263

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 264 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDA 323

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 324 LKSYTGLTHRCQVVADN 340


>gi|241518511|ref|YP_002979139.1| cyanophycin synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240862924|gb|ACS60588.1| cyanophycin synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 910

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHT 365
           F V NAL A+ + +  G+   ++ E L           GR   V     G RI VDYAH 
Sbjct: 706 FNVENALAASAMAVCNGVPLPVIREALRSFGTSYEQSAGRLNMV--EREGVRIIVDYAHN 763

Query: 366 SNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
              L  + + +  + +G    I V G GGDR       MG+IA  + D  I+ +D
Sbjct: 764 PGGLRALGRLVGKLRTGNSSCIGVVGIGGDRRDQDIYEMGEIAASVFDRLILKED 818


>gi|269792481|ref|YP_003317385.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100116|gb|ACZ19103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 462

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 20/133 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTG++GK++  S +  +   +G+S+   G    I +      L+  +P  +   LS 
Sbjct: 110 VVGVTGSNGKTTTTSILGHVLNAAGVSTAVAG---NIGNPLGSVPLSGETPSLVVAELSS 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  H   EAS  G             G  TNL  DHID+H + + Y  AK RL E 
Sbjct: 167 FQ----LHWCEEASFAG-------------GVVTNLAPDHIDWHGSYENYVLAKRRLIER 209

Query: 237 LLPKESPAIIYAD 249
             P     +  AD
Sbjct: 210 TGPDGFAVVQLAD 222


>gi|297616979|ref|YP_003702138.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144816|gb|ADI01573.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 456

 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 23/218 (10%)

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           VSVE SS  L+  R    ++ A    N+  DH+D H T + Y  AK ++     P +   
Sbjct: 161 VSVEVSSFQLETIREFHPRVAA--VLNITPDHLDRHGTMEQYVEAKAKILSNQGPDDFSV 218

Query: 245 IIYADDAYSKEVMKRAHN-----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + Y +DA+ + +   A +     +  R L    +G ++   K+ A     +V I      
Sbjct: 219 LNY-EDAWVRRLKTEAKSQVIFFSTARRLP---RGVYVEDGKIKARLYDDEVVICPREN- 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L GE  + N L A G+ IA+G+    + + L     V  R E V      G +Y
Sbjct: 274 ----VALRGEHNLENVLCAVGIAIALGVKPDTIADTLRSFKGVRHRLEEV--RRVNGVLY 327

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           V+ +  +N  E  +K ++      I++     G R++G
Sbjct: 328 VNDSKGTNP-ESTIKALQAFQEPVILI----AGGRNKG 360


>gi|90418196|ref|ZP_01226108.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337868|gb|EAS51519.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 470

 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 45/260 (17%)

Query: 102 LSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           + LF        PE   +A+TGT+GKS+  + +      +G    Q+G    ++      
Sbjct: 100 IELFCRERRALAPEAPFVAITGTNGKSTTTALIAHCLAHAG-RDVQLGGNIGVAVMT--- 155

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            L  P+P                H  VE SS+ +D      I+   G   NL  DH+D H
Sbjct: 156 -LAPPAP--------------ERHYVVECSSYQIDLAPT--IEPSIGLLLNLTPDHLDRH 198

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----------SV 270
            +  +Y   K R    L+     AI+  DD + +++     + G  V+           V
Sbjct: 199 GSMSSYAAVKAR----LVAGSQLAIVGVDDPHCRQIADELESEGHTVVRISQTDGLDAGV 254

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G+ G+ +H +    +  + + +      D   +  L G     NA  A  +  A+G+   
Sbjct: 255 GFDGRMLHRR----MEGRPEASF-----DLSAIGSLRGRHNGQNAAAAVAVFTALGLSDE 305

Query: 331 LVLEHLEKLHVVPGRFEFVG 350
            ++  LE    +  R E VG
Sbjct: 306 EIVAGLESFPGLAHRMEEVG 325


>gi|77460893|ref|YP_350400.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
 gi|109892724|sp|Q3K745|MURC_PSEPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77384896|gb|ABA76409.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
          Length = 486

 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 131/328 (39%), Gaps = 56/328 (17%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 73  AAAADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 125

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  
Sbjct: 126 GKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHL 182

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
           Q +  V     +        D +    G F  L +  +++      Y  A M L      
Sbjct: 183 QPLVAVVTNIDA--------DHMATYDGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234

Query: 236 ELLP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+LP  + P + Y    +S++   RA N    V   G Q  F  L+      +++ + +S
Sbjct: 235 EILPLVKRPTVTY---GFSEDADVRAIN----VRQQGMQTFFTVLRP-----DREPLDVS 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGT- 351
           V          +PG   V N+L  A +CIA   G+    +++ L     V  RF+  G  
Sbjct: 283 VN---------MPGNHNVLNSL--ATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGEL 331

Query: 352 NSRGGRIYV--DYAHTSNSLEMILKNIR 377
              GG + +  DY H    +  ++K +R
Sbjct: 332 PVDGGNVMLVDDYGHHPTEVAAVIKAVR 359


>gi|55981048|ref|YP_144345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
 gi|55772461|dbj|BAD70902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 131/354 (37%), Gaps = 60/354 (16%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G +F A+ G    G  FIP+A+A+GA  ++       Q   AT+    P   +    + L
Sbjct: 50  GSLFAALPGRTTHGRHFIPEALARGASLVLAD-----QAGPATLEVEDPWQALLRLGEAL 104

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                RL+   P  +LAV G+SGK++     + + Q  GL +    P   ++        
Sbjct: 105 R----RLF---PGPVLAVGGSSGKTTTK---EALAQGLGLPA----PPGNLN-------- 142

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T P  +     L   S   V  + V+      +   L    L     T LG +H++   T
Sbjct: 143 TAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKPHLAV--LTALGEEHLEAFGT 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +     +  L        +P  +  + A                L +G +   +     
Sbjct: 201 LEKAVQEEAHLLR------APTALVGEQAAP--------------LVLGLREDLLVYGFA 240

Query: 283 CAIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 + + + +    F +       P PG    Y AL A      +G+    V E L 
Sbjct: 241 EGTFRGRDLELGLRESRFRYGGLHVRVPYPGLGPAYGALAALAAAEVLGLSLEEVAERLA 300

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFG 389
           +L + PGR E   T   GG ++V+ A+ +N L  +   +R + +  GR   V G
Sbjct: 301 RLTLPPGRME---TREVGGVVFVNDAYNANPLS-VKAGLRWLAAQPGRKWAVLG 350


>gi|262395258|ref|YP_003287112.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|262338852|gb|ACY52647.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 485

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 44/284 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  EL+P+ S  +I     +S++   R  N        G QGKF  ++K  A    
Sbjct: 234 IDDPVVRELIPRISRQVITY--GFSEDADVRIEN----YRQEGQQGKFTVVRKGRA---- 283

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                     + D    +PG     NA  A  +     I+   +L+ +        RF+ 
Sbjct: 284 ----------NLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDH 333

Query: 349 VG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           +G   T +    +  DY H    +++ +   R+     R++++F
Sbjct: 334 LGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIF 377


>gi|209519096|ref|ZP_03267902.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
 gi|209500468|gb|EEA00518.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
          Length = 467

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 111/290 (38%), Gaps = 39/290 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA+A+VVS+A         +RS+ P ++    R+   +  + +  +    +  +A+ GT
Sbjct: 63  EGADAVVVSTA---------VRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL T   I              
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV------------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                 A +   D   L+   +I    TN+  DH+D +    A        F   LP   
Sbjct: 159 ------AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE-GKDF 300
            A++  DD   KE++         ++  G+  +  +    V A   +   T   E     
Sbjct: 212 IAVLCVDDPNVKEILPFVSKP---IIRYGFAAEAQVRAVNVEAREGRMHFTAMREDAPSL 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           D    LPGE  V NAL A  +   + +  A +   L   + V  RF+  G
Sbjct: 269 DITLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYG 318


>gi|167753175|ref|ZP_02425302.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
 gi|167659489|gb|EDS03619.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
          Length = 447

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 16/123 (13%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S++ +  R  +I   S+DSR I+   +F A+ G   DG+ F   A+ +GA       AY+
Sbjct: 31  SLYELYLRHPRI---STDSRRIEPDSVFFALRGASFDGNRFAADALEKGA-------AYA 80

Query: 79  LQDFSATIRSNTP-----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           + D   ++ +  P     ++VVD+  + L   A     +    ILA+TG++GK++    V
Sbjct: 81  VVD-DPSLPNTRPDKADRLIVVDDALQTLQALAREHRRELGLPILAITGSNGKTTTKELV 139

Query: 134 QQI 136
            ++
Sbjct: 140 SRV 142


>gi|167586022|ref|ZP_02378410.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ubonensis Bu]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 125/312 (40%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    ++   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARAKRVPIVQRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +     L  +F IG    + S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGDLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG
Sbjct: 208 PFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREG 264

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
           ++    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   + G
Sbjct: 265 REPLPVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPAAG 324

Query: 356 GRIYV---DYAH 364
           G  Y    DY H
Sbjct: 325 GGSYTLIDDYGH 336


>gi|4033456|sp|O51926|MURC_BUCAP RecName: Full=Putative UDP-N-acetylmuramate--L-alanine ligase;
           AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 127/335 (37%), Gaps = 70/335 (20%)

Query: 68  AEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ I++SSA    +    A  + N PIL+     + L +F    +G      +AV+GT G
Sbjct: 77  ADFIIISSAIPSDNPEIKAAKKKNIPILL---RAEMLQIFMQFKFG------IAVSGTHG 127

Query: 126 KSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKAL----SYLSS 179
           K+++ + +  I  ++ L    I  G   +I+S A+       S  ++A+A     S+L  
Sbjct: 128 KTTLLAMIFDILNQNKLDPTVINGGLIKSINSHAK----LGFSKYFIAEADESDGSFLCL 183

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              T +                        TN+  DHID +  +          F   +P
Sbjct: 184 NPTTAI-----------------------ITNIEPDHIDNYNGEFKLLKKTFLDFLNKIP 220

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHN-----KQQ 290
               AI+  D+   K ++       C+V++ G+    + +    K+   I N     K+Q
Sbjct: 221 SYGIAILCTDN---KAILNILPKIKCKVITYGFNKSAEFRITSYKQSDFISNFTLIRKKQ 277

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +       + + +  LPGE    NA  A        I    + + L+       RFE+VG
Sbjct: 278 LN------NLEIILNLPGEHNALNATAAIAFATYQKIPDEKIYQSLKNFKGTSRRFEYVG 331

Query: 351 T--------NSRGGRIYVDYAHTSNSLEMILKNIR 377
                     ++   +  DY H    L   +K IR
Sbjct: 332 KLFIKKKSIQNKSVMLINDYGHHPTELSETIKTIR 366


>gi|261749596|ref|YP_003257282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497689|gb|ACX84139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 433

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 121/301 (40%), Gaps = 49/301 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILV 94
           +S+ ++ G IF A+ GN  DG+ F  +AI+ GA  AIV +  YS         S+  I  
Sbjct: 19  NSKKVKNGSIFFALKGNNFDGNQFAHEAISNGAMIAIVDNIKYSF--------SHKNIFF 70

Query: 95  VDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           V N    L   A  LY +   N   I+A+TG++GK++       I  +     +++   S
Sbjct: 71  VKNALSSLQELA--LYHRLQLNRVPIIAITGSNGKTTTKELTTAILSK----KYEV-VHS 123

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F  +N +  P  +     LS   +  ++ V + A+     Q     I    G  TN
Sbjct: 124 TEKNF--NNHIGIPLTL-----LSMPKNTQISVVEIGANQEKEIQKMCSIIHPNYGYITN 176

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKEVMKRAHNA 263
            G+ H++  +  +     K+ L+  L   +    +  DD           + +     N+
Sbjct: 177 FGKAHLEGFKNIKGVIRGKLELYNFLKKNKKKVFVNGDDPIQLIHSLGIDRYIFSERINS 236

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V  + Y  K   LK V  I            KD   +  L G + +YN  +A+ + I
Sbjct: 237 DVDV-PIKYFWKKTDLKSVLCI------------KDMQIVSSLVGSYNLYN--IASAITI 281

Query: 324 A 324
            
Sbjct: 282 G 282


>gi|300112944|ref|YP_003759519.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
 gi|299538881|gb|ADJ27198.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
          Length = 477

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 130/331 (39%), Gaps = 40/331 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + +VVSSA    +          I VV        L   R YG      +AV GT G
Sbjct: 75  EGCDVVVVSSAIDENNPEVRAARGRLIPVVPRAEMLAELMRFR-YG------IAVAGTHG 127

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  I   + L  +F IG    ++S   ++RL             YL    V  
Sbjct: 128 KTTTTSLIAGILGEANLDPTFVIG--GQVNSIGANSRLGKGE---------YL----VAE 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                +S  L Q  L  I       TN+  DH+D +        A    F   LP    A
Sbjct: 173 ADESDASFLLLQPLLAVI-------TNVDADHMDAYGGDFIALKAAFLEFLHHLPFYGLA 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD--FD 301
           ++  DD   +E++    + G  VL+ G  +     L+ +  I  + Q  ++  GKD    
Sbjct: 226 VVCLDDPVLRELLP---DIGRPVLTYGTCKEADYQLQALKQIRARTQFQVARPGKDNWLT 282

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYV 360
            +  LPG     NAL A  +   +G+  + +   L+    +  RF+  G   +  G++ +
Sbjct: 283 VVLNLPGAHNALNALAAIAVAHELGVADSAIQRFLKGFSGIGRRFQCYGEIATPAGKVLL 342

Query: 361 --DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             DY H    L   L+ IR      R++V+F
Sbjct: 343 VDDYGHHPRELAATLEAIRVGWPERRLVVIF 373


>gi|253576129|ref|ZP_04853461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844472|gb|EES72488.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 104/274 (37%), Gaps = 41/274 (14%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIY 169
           P  IL +TG++GK++  +++  + + +G+     G    P    +  A +         +
Sbjct: 113 PAPILGITGSNGKTTTTTWIGNMLEAAGMRPIVAGNIGIPLCEAAEEADEGN-------W 165

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   LS    +G      E +                    N+   H+DYH T   Y ++
Sbjct: 166 LVAELSSFQLKGTRAFRPEVAC-----------------LLNVAETHLDYHGTMDDYISS 208

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           K +LF      +  A++  DD   +E+   +K           +  +G ++    +  + 
Sbjct: 209 KAKLFANQRETDR-AVLNWDDPVCRELVPYIKAKLIPFSMTEELQSEGVYVEPAYIPDVE 267

Query: 287 NKQQVTISVEGKDFDFL-------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +     I   G D +           LPG F + NAL A    IA G     + E L   
Sbjct: 268 DGLARRIMYRGADGEVRVIIDIADIALPGRFNIENALAAVAAAIAAGAAPEALAEPLRTF 327

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           H V  R E+V  + + G +Y + +  +NS   ++
Sbjct: 328 HGVEHRLEYV--DEKQGVVYYNNSKATNSKATVM 359


>gi|153214090|ref|ZP_01949224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|153826875|ref|ZP_01979542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
 gi|124115516|gb|EAY34336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|149739291|gb|EDM53547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
          Length = 440

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  PS
Sbjct: 100 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVPS 147

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                  L  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 148 -------LDLISPDVELYV-LELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 198 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 236

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 237 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDA 296

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 297 LKSYTGLTHRCQVVADN 313


>gi|83312945|ref|YP_423209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Magnetospirillum magneticum AMB-1]
 gi|118595663|sp|Q2W0H5|MURD_MAGSA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|82947786|dbj|BAE52650.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Magnetospirillum
           magneticum AMB-1]
          Length = 457

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 27/170 (15%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + L A  L G     +LAVTGT+GKS+  + +  +    GL     G   T         
Sbjct: 100 VELLAQALPGA---RMLAVTGTNGKSTTTTLLAHVLDECGLPVAAGGNLGT--------- 147

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYH 220
                      AL      G     +E SS+ L+  H L   KL      N+  DH+  H
Sbjct: 148 ----------AALDLPELPGDGRYVLELSSYQLELTHSL---KLGVAILLNVTPDHLGRH 194

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                Y  AK R+F+ L P  + A++  DD   + ++      G RV+ +
Sbjct: 195 GGMAGYIAAKRRVFDFLTPGGA-AVVGIDDGPCRAIVAELDRRGIRVVKI 243


>gi|329905042|ref|ZP_08273977.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547778|gb|EGF32551.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 831

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 148/388 (38%), Gaps = 52/388 (13%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+ P  ++AVTGT+GK++    +  +  ++GL   ++G T+T   + +  R+ +      
Sbjct: 443 GRIP--VVAVTGTNGKTTTVRLIAHLMTQTGL---RVGMTNTDGVYIRGRRIDSGDCSGP 497

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI------------ 217
             A + L    V     E +  G+ +  L   +      TN+G  DH+            
Sbjct: 498 RSARNVLLHPDVDAAVFETARGGVLREGLAFDRCQVAVVTNIGTGDHLGLNYITTVEDLA 557

Query: 218 --------DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
                   +   T  A  NA   +   +    S ++ +        VM      G RV+ 
Sbjct: 558 VLKRVIVQNVSDTGVAVLNATDPIVARMAGNCSGSVTFFGSDRRHPVMATHRAQGRRVV- 616

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGI 327
                 FI    + A   K +  I++     +      G   FQV N + +     A+ +
Sbjct: 617 ------FIDDDMLVAAEGKTEYRIALS----EIPITRGGAIGFQVENVMASVAAGWALDL 666

Query: 328 DSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382
           D  ++   L+         PGRF     + RG  +  DY H  +++  +++ +  + +  
Sbjct: 667 DWDVMRSGLKSFANDSDNAPGRFNVF--DYRGATLIADYGHNPDAILALVQAVECLPAKR 724

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R +V+ G G  RD+  R     +     D+ +  D   R     ++ A +  G+ G    
Sbjct: 725 RSVVISGAGDRRDEDIRQQTEILGAAFDDVLLYQDQCQRGRADGEVVALLRAGLAGASRT 784

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E      AI TA+E L+  D+ ++
Sbjct: 785 TVIDEIRGEFLAIDTALERLSPGDLCLI 812


>gi|325954316|ref|YP_004237976.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
 gi|323436934|gb|ADX67398.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
          Length = 446

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYV-DYA 363
           LPG   + NAL A  +   +GID   ++E L +   V  RF  F  T+    +IY+ DYA
Sbjct: 268 LPGRHNMENALAALAVADYMGIDEKKIIEALAEFKGVKRRFNRFEYTD----KIYIDDYA 323

Query: 364 HTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNP 420
           H  N L+ +++++R +  + ++++VF          R  + + A  L+  D  ++ D  P
Sbjct: 324 HHPNELKAVIESVRELYPTKKLLLVFQP--HLYTRTRDFVNEFAESLSAVDELVLLDIYP 381

Query: 421 RSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML--NKQDVLVVAGKGH 469
             E P E + +E +       +K  ++ ++  A+++L   K D+L+ AG G+
Sbjct: 382 ARELPIEGVTSEWLLSKITLDQK--KVCSLEGAMDLLKTKKFDILLTAGAGN 431


>gi|269122823|ref|YP_003305400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314149|gb|ACZ00523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
          Length = 405

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 137/344 (39%), Gaps = 80/344 (23%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +VS +S+      +F AI  NK  G+ +  +A + GA  I       + +          
Sbjct: 23  KVSINSKEATPNSVFFAI--NK--GNDYAKEAESMGAFVIYDKKELDIHNGH-------- 70

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
              V+++ KF+  FA R    +   ++ +TG++GK++V   +  +    G+  ++     
Sbjct: 71  --YVEDSVKFMQEFARRYRKNNKFIVIGITGSNGKTTVKDILHSVLSNKGVRVYK----- 123

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--- 208
             +    +N +  P  I  AK      S  +  + +  S+ G     +D +  IA     
Sbjct: 124 --TQGNYNNHIGLPFTILSAK-----DSDEILLLEMGMSNLG----EIDLLGYIAKPDYS 172

Query: 209 -FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G+ H++Y +T +  F AK     E++P  S  ++                     
Sbjct: 173 IITNIGQSHLEYLKTMENVFKAKT----EIIPHTSKKVV--------------------- 207

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                 GK   L K+  +       I VE KD      L G+  + N  +   L   +G 
Sbjct: 208 ----VNGKDEFLSKLDGV-------IKVETKDIK--TNLLGDHNLLNVSIVDSLLKYMGF 254

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           D  L  E++E   +  GRF+ V    +G   Y++ A+ ++ + M
Sbjct: 255 DD-LCYENIE---LTDGRFQIV----KGKYTYINDAYNASPISM 290


>gi|219870389|ref|YP_002474764.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
 gi|219690593|gb|ACL31816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
          Length = 432

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 138/338 (40%), Gaps = 59/338 (17%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            Y +    I+A+TG++GKS+V +   ++ +++G+   ++G    I               
Sbjct: 100 FYREAKAPIIAITGSNGKSTVTTLTTEMAKQAGV---KVGMGGNIG-------------- 142

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               ALS L      +V +E SS  L+      +K  A +  N+  DH+D +++ + Y  
Sbjct: 143 --VPALSLLKGDYELYV-LELSSFQLETTY--SLKAKAATILNISEDHMDRYESIEDYRQ 197

Query: 229 AKMRLFEE----LLPKESPAII--YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           AK++++      ++  E P      A  +  K   K A    C                 
Sbjct: 198 AKLKIYHHAENVIVNGEDPQTFPEQAVGSLKKFAEKDAEYTACN---------------- 241

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +++  +  I+++         + G   V NAL +  L  A G+D + +++ L+    +
Sbjct: 242 GELYSGDEAVIAIDE------LKITGRHNVMNALASMSLAEAAGVDRSGIVKALQSYSGL 295

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPI 401
             RF+ V TN  G R   D   T+    +   N   +     +++ G G D D  + +P 
Sbjct: 296 DHRFQLVPTND-GVRWINDSKATNVGSTVAALNGLQVEGTLYLLLGGDGKDADFSELKPF 354

Query: 402 MGK-------IALDLADIAIVTDDNPRSEDPEKIRAEI 432
           + +          D A++A +T ++   E  E+  A+I
Sbjct: 355 INQPNTVCYCFGKDGAELAALTQNSVLVETMEQAVAQI 392


>gi|330888571|gb|EGH21232.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 486

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 161/426 (37%), Gaps = 66/426 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A    S     H 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADE--SDASFLH- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKES 242
                           ++ + G  TN+  DH+    T +  FN   + F E    LP   
Sbjct: 182 ----------------LQPLVGVVTNIDADHM---ATYEGDFNKLKKTFVEFLHNLPFYG 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------E 296
            A++  DD   +E++ +        L+ G    F     + AI+ +Q   ++       +
Sbjct: 223 LAVMCIDDPVVREILPQVKRP---TLTYG----FSESADIRAINVRQDGMLTFFTVLRRD 275

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRG 355
            +  D    +PG   V N+L    +    G+    +++ L     V  RF+  G     G
Sbjct: 276 REPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEG 335

Query: 356 GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-- 411
           G + +  DY H    +  ++  +R     R +V+      R    R +       LAD  
Sbjct: 336 GNVMLVDDYGHHPREVAAVISAVRGGWPDRRLVMV-SQPHRFSRTRDLYDDFVQVLADAN 394

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + ++ +  P  E+  P      + H I       P +IE+G  +E       +L   D+L
Sbjct: 395 VLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAPLVKPLLRAGDIL 452

Query: 463 VVAGKG 468
           +  G G
Sbjct: 453 LCQGAG 458


>gi|300112941|ref|YP_003759516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
 gi|299538878|gb|ADJ27195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
          Length = 452

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 29/167 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS   +L + +  +     I V+ +    + LFAS  Y K P  ++ +TG++GKS
Sbjct: 74  AEQLVVSPGVALSEPAIQVAQARGIPVIGD----IELFAS--YAKAP--VIGITGSNGKS 125

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S ++ + +++G      G             L  P+   L K +  L    ++   +
Sbjct: 126 TVTSLLEMMARQAGKQVLAGG------------NLGLPALELLEKPVPDLYILELSSFQL 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           E +           +  +A    N+  DH+D +    AYF AK R++
Sbjct: 174 ETTYT---------LNTVAACVLNISPDHMDRYPDLDAYFQAKARIY 211


>gi|149280098|ref|ZP_01886222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
 gi|149229112|gb|EDM34507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
          Length = 433

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 44/367 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I    +F A+ G+K + + F  QA+ +GA       AY++ D          I
Sbjct: 17  VCTDTRAISKDCLFFALRGDKFNANEFAAQALKEGA-------AYAIIDDQQYHTDERCI 69

Query: 93  LVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           LV D       L  S R+  + P  ++ +TG++GK++    ++ I             + 
Sbjct: 70  LVPDVLTALQDLARSHRIELRIP--VIGLTGSNGKTTTKELIKAIL------------SE 115

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIA-GS 208
              +FA    L      ++   LS LS      ++V    ++H  +   L  I L   G 
Sbjct: 116 KYRTFATSGNLNN----HIGVPLSILSITDDIEIAVIEMGANHQKEIELLCSIALPEYGL 171

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H+D     +     K  L+  L  ++  A I  D+ Y   +++ AH A  ++ 
Sbjct: 172 ITNVGMAHLDGFGGFEGVKKGKAELYAHLKQQQGKAFINNDNPY---LLEMAHTA--QLS 226

Query: 269 SVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            + Y G         A+++     +++   +G +F     L G +   N L A    I I
Sbjct: 227 DIVYYGSERSNTISGALNSTDPFLELSWQKQGSEFSVGTQLTGAYNFENILAA----ICI 282

Query: 326 GIDSALVLEHLEK--LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           G   +L  E + K      P       T +    +  D Y    +S+   LKN+ ++ + 
Sbjct: 283 GDFFSLTPEQINKGLSGYAPQNNRSQLTKTEHNTVICDFYNANPSSMNAALKNMDSLHAA 342

Query: 383 RIIVVFG 389
             +V+ G
Sbjct: 343 NKVVIIG 349


>gi|116073647|ref|ZP_01470909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
 gi|116068952|gb|EAU74704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
          Length = 457

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 29/251 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK++V   +Q +   +GL +   G           N   + + + LA +  +L
Sbjct: 111 IGITGTNGKTTVTHLLQHVLSHAGLQAPMAG-----------NVGHSAAELALACSSGHL 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + +E SS+ ++  +    ++  G +T L  DH++ H T  AY   K      L
Sbjct: 160 PQP--DWIVMEMSSYQIEAAQQVAPRI--GIWTTLTPDHLERHGTLDAYRAIK----HGL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVE 296
           L +   A++ ADD    ++ +  H    +  +  +          C +  + +Q   S E
Sbjct: 212 LARSEQAVLNADD---PDLCRHHH----QWPAATWVSTSPTPPVPCTLWIDPEQWVCSRE 264

Query: 297 GKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            + F     PLPG     N L+     +  G+  + +   L     VP R E +G   +G
Sbjct: 265 QRLFPADALPLPGNHNRQNMLLVTAAALHAGLPPSAIEAALRCFSGVPHRLEPLGL-VKG 323

Query: 356 GRIYVDYAHTS 366
            R+Y D   T+
Sbjct: 324 MRVYNDSKATN 334


>gi|297170501|gb|ADI21531.1| UDP-N-acetylmuramate-alanine ligase [uncultured verrucomicrobium
           HF0070_15G23]
          Length = 416

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 105/273 (38%), Gaps = 30/273 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           L +TGT GK++ AS +  I   +G + S+ IG      +F+Q  R T    I +      
Sbjct: 69  LVITGTHGKTTTASLLAWILDCNGFNPSYLIGGIP--ENFSQGARFTDSEWIVM------ 120

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +G  + +          H L  + LI     NL  DH D     Q    +  RL   
Sbjct: 121 ---EGDEYDTAFFDKRSKFLHYLPEVVLI----NNLEFDHSDIFNDLQQIQTSFKRLI-N 172

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+P     ++  DD     ++   H   C + S        HL  +   + +  V   ++
Sbjct: 173 LVPSNGLLLVNGDDKNITPLIDVDH---CPIESFTLS----HLTDLG--YRQTGVRFVLD 223

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  F F  PL GE  V NAL    +    G+ +  +    +    +  R E V    RG 
Sbjct: 224 G--FCFELPLYGELNVRNALGVIYIARYCGLSNKQIQGGFDSFEGIKRRME-VKAEIRGI 280

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
            +  D+AH   ++   LK  R    G RI  VF
Sbjct: 281 TVVDDFAHHPTAIRETLKAARVRFPGKRIWAVF 313


>gi|306836710|ref|ZP_07469673.1| tetrahydrofolate synthase [Corynebacterium accolens ATCC 49726]
 gi|304567388|gb|EFM42990.1| tetrahydrofolate synthase [Corynebacterium accolens ATCC 49726]
          Length = 523

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 143/367 (38%), Gaps = 69/367 (18%)

Query: 113 HPE---NILAVTGTSGKSSVASFV-------------------QQICQRSGLSSFQIGPT 150
           HPE   +++ + GT+GKSS A  V                   Q++ +R G+    I P 
Sbjct: 105 HPEQSFDVIHIAGTNGKSSTARMVDSLLRSFHRRVGLVTSPHLQRVTERIGIDGRPIHPR 164

Query: 151 STISSFAQ--------DNRLTTP-SPIYLAKALSY--LSSQGVTHVSVEASSHGLDQHRL 199
             +  + +        D R   P S   +   LSY   +   V    VE    GL     
Sbjct: 165 DYVRLWHEIKPYVEMVDARSDVPMSKFEVLVGLSYAAFADAPVDVAVVEVGLGGL----W 220

Query: 200 DGIKLIAGS---FTNLGRDHIDYHQT--------QQAYFNAKMRLFEELLPKESPAIIYA 248
           D   ++       T +G DH DY  +        +      +    + L P E+ AII  
Sbjct: 221 DATNVVNADVSVITPVGLDHTDYLGSDIREIAGEKAGIIKHRADAEDPLTPNENIAIIAE 280

Query: 249 DDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            D  + +V ++RA +    V   G   +F  L+   A+   QQV I   G  + D   PL
Sbjct: 281 QDPEAMQVILQRAVDMDAGVARSG--AEFAALESRIAV-GGQQVNIQGLGGMYEDIFLPL 337

Query: 307 PGEFQVYNALVAA-------GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            GE Q  NA VA        G      +D A V     K  + PGR E V T+      +
Sbjct: 338 HGEHQAKNAAVALAAVEAFFGAASGHPLDIASVRNGFAKT-ISPGRLERVRTSP---TTF 393

Query: 360 VDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVTD 417
           +D AH  +  + +   + R     R+I V     D+D QG   I+  +   L+++ I  +
Sbjct: 394 IDAAHNPHGAKALGAALDRDFDFARLIGVVSIFADKDAQG---ILAALEPYLSEVVISQN 450

Query: 418 DNPRSED 424
            +PR+ D
Sbjct: 451 SSPRALD 457


>gi|254525588|ref|ZP_05137640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537012|gb|EEE39465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
          Length = 478

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 29/240 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + +TGT+GK++V   +  I   +GL           + FA +  + TP    L K   
Sbjct: 121 NWIGITGTNGKTTVTHLLSHILCDNGL----------YAPFAGN--IGTP----LCKYAC 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + +  V  E SS+ ++      +K   G +T    DH++ H+T + YFN K  L E
Sbjct: 165 SKKLEKIDWVVAELSSYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSLLE 222

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +S   IY  D  +      + + G  + +   +  FI     C      Q  I  
Sbjct: 223 -----KSDFRIYNYDDKNLRNHYSSLSRGVWITTSLDKSNFIQ----CDYWIDDQAYIVE 273

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            GK    L  F L G   + N L+       +G+    + + L     +P R E +  N+
Sbjct: 274 RGKRLFKLEYFSLRGMHNLQNLLLVIAAVRKVGLSGKEIKDSLSNYKQLPHRMETIYKNN 333


>gi|167614206|gb|ABZ89709.1| UDP-N-acetylmuramate--L-alanine ligase [Buchnera aphidicola]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 118/316 (37%), Gaps = 50/316 (15%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           ++N PIL+     + L +     YG      +A++GT GK++  S +  I   SGL    
Sbjct: 99  KNNIPILL---RAEMLEILMQFKYG------IAISGTHGKTTTTSIIADIFIESGLDPTI 149

Query: 147 I--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           I  G   +I+S A+               L Y     V     +AS   L+         
Sbjct: 150 INGGIIKSINSHAK---------------LGYSRYFIVEADESDASFLYLNPK------- 187

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+  DH+D++             F + +P    AI+  D+    +++       
Sbjct: 188 -IGIITNIEDDHMDHYDNNFIKLKQAFLTFLKKIPLNGTAIVCIDNDAICDILPYIK--- 243

Query: 265 CRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           C++L+ G+       I+  K        Q+ I  + K  +    +PG+    NA  A  L
Sbjct: 244 CKILTYGFNKNADFHIYSYKQDGFIGYLQIIIKHQIK-LNITLNIPGKHNALNATAAVVL 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--------DYAHTSNSLEMIL 373
            I   I    ++  L+       RFEF+G  S    I          DY H    L   +
Sbjct: 303 AIHEKIKHYNIIASLKNFQGTCRRFEFLGKYSIKKNIIKRQPTMLIDDYGHHPTELSETI 362

Query: 374 KNIRT-ITSGRIIVVF 388
             IRT   +  +I++F
Sbjct: 363 NTIRTGWPNNNLIMIF 378


>gi|270291458|ref|ZP_06197680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
 gi|270280304|gb|EFA26140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
          Length = 464

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 48/286 (16%)

Query: 117 ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIG----PTSTI--SSFAQDNRLTTPSPIY 169
           ++ VTG++GK++V + +Q  + Q+   +++  G    P +T+   + A D  +   S   
Sbjct: 118 LIGVTGSNGKTTVTTMIQLMLDQQDHHAAYVAGNIGVPATTVVQKATANDRVVMELSSFM 177

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           LA                     G+DQ     I ++   F+N    H+D+H+T++ Y N 
Sbjct: 178 LA---------------------GIDQLH-PHIAVVNNIFSN----HLDWHKTRENYVND 211

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           KMR+ E    K+   +I  D+   +++ +R      +V+    QG    L +  A     
Sbjct: 212 KMRITENQT-KDDYFVINWDNPEWQQLAQR---TAAQVVPFSRQG----LVENGAYAKDG 263

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q+    E         +PG+  V NAL A  +    G+ +  + + L+    V  R ++V
Sbjct: 264 QLYFKNERIMAADEIGVPGDQNVENALAAIAVAKIEGVANKHIKQVLQTFSGVKHRIQYV 323

Query: 350 GTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDR 394
            T + G + Y D   T   + ++ LK  +     R I++   G DR
Sbjct: 324 KTLA-GRQFYNDSKATDIEATQVALKAFQ-----RPIILIAGGLDR 363


>gi|220920537|ref|YP_002495838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium nodulans ORS 2060]
 gi|219945143|gb|ACL55535.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           nodulans ORS 2060]
          Length = 460

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 32/254 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TGT+GKS+  + +  + + +G    Q+G     +  +    L  P+P         
Sbjct: 116 FVAITGTNGKSTTTALIAHVLRETG-HDVQMGGNIGTAILS----LAPPAP--------- 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  HV +E SS  +D      +K   G   N+  DH+D H     Y   K    E 
Sbjct: 162 ----GRVHV-IEMSSFQIDL--TPTLKPSVGVLLNITPDHLDRHGDMANYAGIK----ER 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTIS 294
           L+     A+I  DD Y++ +  R H      + VG    G  I  +    I    +    
Sbjct: 211 LIASSDHAVIGVDDDYTRAIAAR-HAGPLTRVHVGETAPGPGILARHGVLIDGCTEPPSP 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V   D   +  L G     NA +A  +  A+G+      + L     +P R E VG   R
Sbjct: 270 V--ADLTGIPSLRGSHNWQNAGIAYAVARALGVAPDAFAQALRSFPGLPHRMEEVG--RR 325

Query: 355 GGRIYVDYAHTSNS 368
           G  ++++ +  +N+
Sbjct: 326 GSVLFINDSKATNA 339


>gi|53726037|ref|YP_104093.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|67643628|ref|ZP_00442373.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|121599536|ref|YP_991820.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei SAVP1]
 gi|124384790|ref|YP_001027313.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126449994|ref|YP_001082750.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|251766632|ref|ZP_04819734.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
 gi|254178949|ref|ZP_04885603.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|254202814|ref|ZP_04909177.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|254208156|ref|ZP_04914506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|254357640|ref|ZP_04973914.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|59798163|sp|Q62GS8|MURC_BURMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222963|sp|A3MR64|MURC_BURM7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222964|sp|A2S5U4|MURC_BURM9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222965|sp|A1V0R7|MURC_BURMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52429460|gb|AAU50053.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|121228346|gb|ABM50864.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei SAVP1]
 gi|124292810|gb|ABN02079.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126242864|gb|ABO05957.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|147747061|gb|EDK54138.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|147752050|gb|EDK59117.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|148026704|gb|EDK84789.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|160694863|gb|EDP84871.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|238525007|gb|EEP88437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|243065315|gb|EES47501.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 47/294 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYG-KHPENILAVTGT 123
           +GA A+VVS+A         +RS+ P +L     R  +   A  L      +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARRLRVPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    ++S   + RL     I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGMGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297
           P    A++  DDA  ++++         V+  G+     +  + V A   +   T+  EG
Sbjct: 208 PFYGSAVVCIDDANVRQIVPLISKP---VVRYGFAADAQVRAENVEARDGRMHFTVRREG 264

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G
Sbjct: 265 REPLPVVLNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYG 318


>gi|169831595|ref|YP_001717577.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638439|gb|ACA59945.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 14/161 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL  DH+D H T +AY  AK  +F      +   + + DD  ++ +  R   A     S 
Sbjct: 180 NLTSDHLDRHGTMEAYIEAKAAIFANQQASDWTVLNF-DDPRTRALASRTR-AEVIFFSR 237

Query: 271 GY---QGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +   QG FI   ++ A    K+     V          +PG   V NAL A      +G
Sbjct: 238 QHKLEQGVFIQDGQIMARAGGKEAAVCPVR------TLSIPGAHNVENALAATAAGWVLG 291

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           I  + +   L     VP R E VG    GG  YV+ +  +N
Sbjct: 292 IGPSALGRALTSFQGVPHRLETVGWV--GGVEYVNDSKATN 330


>gi|75908035|ref|YP_322331.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413]
 gi|8134380|sp|O86109|CPHA_ANAVT RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|3393028|emb|CAA06440.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413]
 gi|75701760|gb|ABA21436.1| Cyanophycin synthetase [Anabaena variabilis ATCC 29413]
          Length = 901

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 4/117 (3%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR       +
Sbjct: 727 PGRMNLF--NLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTL 784

Query: 403 GKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           GK+A ++ D  IV  DD+ R        A I  GI   ++   R E+I    + +NK
Sbjct: 785 GKLAAEIFDYIIVKEDDDTRGRPRGSASALITKGITQ-VKPDARYESILDETQAINK 840


>gi|323491031|ref|ZP_08096223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
 gi|323314695|gb|EGA67767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
          Length = 441

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 120/304 (39%), Gaps = 55/304 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V  +  Q+ + +GL   ++G    I              +    A  Y
Sbjct: 112 VIAITGSNGKSTVTDWTGQVAKATGL---KVGVGGNIG--------VPALDLLTLDADLY 160

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +         +E SS  L+       K  A +F NL  DH+D +Q  + Y  AK+R+F+ 
Sbjct: 161 V---------LELSSFQLETTSSLAPK--AAAFLNLTEDHMDRYQGMEDYRQAKLRIFDH 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   I+ A+D   K+     +N               HL +     + Q   I  +
Sbjct: 210 ----AQSCIVNAED---KQTYPDQNNK--------------HLVEFSLTDSTQFSVIDCD 248

Query: 297 GKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           G ++  +            L G   V NALV   L   +G+D    L+ L+  + +  R 
Sbjct: 249 GIEYLAMNGKQIIPAAELSLVGRHNVANALVVLALLSQVGVDIEKGLDALKSYNGLTHRC 308

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKI 405
           + V  N RG +   D   T+ +  M       +     ++V G G   D  +  P++ K+
Sbjct: 309 QVVADN-RGIKWVNDSKATNVASTMAALAGLELAGTLYLLVGGMGKGADFSQLAPVLDKL 367

Query: 406 ALDL 409
            L L
Sbjct: 368 DLQL 371


>gi|154503754|ref|ZP_02040814.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
 gi|153795854|gb|EDN78274.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
          Length = 487

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 44/339 (12%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           A+GA+      A ++ D      ++A IR     L+    +K   L  + L G+   N  
Sbjct: 81  AKGAQIFYGQKASNIIDGIDCVVYTAAIRRENAELMEAVAKKIPMLTRAELLGQLMANYK 140

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAK 172
             +AV+GT GK++  S +  +     L +    PT ++    Q    N     S I++ +
Sbjct: 141 TPIAVSGTHGKTTTTSMISHV-----LLAGDTDPTISVGGILQAIGGNIRVGSSGIFVTE 195

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y +S                 H    I +I     N+  DH+D+ +  +        
Sbjct: 196 ACEYTNSF---------------LHFFPKISII----LNIEADHLDFFKDLED-IRHSFH 235

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F  LLP +   II  +    +E+ +      C V++ G   +F +  +      K +V 
Sbjct: 236 QFAALLPSDGTLIINGEIDQYQEICE---GLDCSVVTYGMSPEFDYSAQNITYDEKGRVA 292

Query: 293 ISV--EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 GK D   +  + G+  V NAL A      +G+    + + L        RFE+ 
Sbjct: 293 FDFFRNGKLDTHIVLSVTGDHNVSNALSAIATAELLGLSMDTIQKGLLSFSGTDRRFEYK 352

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           GT      I  DYAH    ++  LK  +     ++  VF
Sbjct: 353 GTIDD-VTIVDDYAHHPTEIKATLKAAKHYPHRKLWCVF 390


>gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
 gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
          Length = 457

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 33/282 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER    V +D+R    G +FVA+ G + D H  +   +   A  ++V     +       
Sbjct: 23  ERVFEGVFTDTRQPLEGGLFVALRGPRFDAHEHVAADLP--AAVLLVERVLDVPH----- 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P +VV +T + L   A     +    ++A+TG++GK++    ++  C   G+ S  
Sbjct: 76  ----PQVVVADTGEALGRLAQHWRRRSRARVIALTGSNGKTTTKEMLR--CILEGVGSVH 129

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRL-DGIK 203
               +T  +   +N +  P        L+ L+    T  +V    ++H  +  R+    +
Sbjct: 130 ----ATQGNL--NNEIGVP--------LTLLAMPEDTDYAVIEMGANHAGEIGRMARWTE 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +    TN GR H++   + +   +AK  +F  L  +   A+I  DD ++   +    + 
Sbjct: 176 PMVAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGTAVINLDDPFADYWLSLNEHH 235

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            C+  S+   G+   ++ V    ++ ++TI   G+D     P
Sbjct: 236 HCQRFSLEGGGE---IEGVWQAPDRLRLTILGAGRDLRLASP 274


>gi|71082735|ref|YP_265454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71061848|gb|AAZ20851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 40/218 (18%)

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRL 109
           N +D H    + I +  + I++S    + +   S  ++ N   +  D     L +F SR 
Sbjct: 47  NIKDTHTTYKEIIKKEFDCIIISPGIDINNCKLSRFLKKNHKKIYTD-----LDIFYSR- 100

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSP 167
           Y  + +  + +TGT+GKS+ A  +  I +                   +D RL     +P
Sbjct: 101 YAFNQK--ITITGTNGKSTTAKLLYDILKDQ----------------KKDVRLVGNIGNP 142

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQA 225
           + L K +     +  T   +EASS+ L+  +L    I LI     N+  DH++ H+T   
Sbjct: 143 VLLEKKI-----KKDTLFVIEASSYQLEYSKLFKTNISLIL----NISPDHLERHKTINK 193

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           Y +AK +L +    K   AI+   + Y K  +K+   A
Sbjct: 194 YVSAKFKLIKN-QSKNDIAILNTKNFYIKRKLKQKKFA 230


>gi|33592809|ref|NP_880453.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|33572457|emb|CAE42026.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|332382222|gb|AEE67069.1| cyanophycin synthetase [Bordetella pertussis CS]
          Length = 857

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 117/316 (37%), Gaps = 41/316 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA R  G+ P  ++AV GT+GK++       I   +G    ++G T++   +    R+ 
Sbjct: 461 MFAERDDGRIP--VVAVAGTNGKTTTVRLTAHILDCAG---HRVGMTNSDGVYVGKQRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DH------ 216
           T        A   L    V    +E +  G+ +  L   +      TN+G  DH      
Sbjct: 516 TGDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHFGLGYI 575

Query: 217 -------------IDYHQTQ-QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                        + Y Q    A  NA   +  E+      +I Y  +  +  VM     
Sbjct: 576 STVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRA 635

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G RV+       +     + A     +V  ++   D          FQV N + A    
Sbjct: 636 QGHRVV-------YRDGDSLVAAQGGAEVAFAL--ADIPLTRGGAIAFQVENTMAALAAA 686

Query: 323 IAIGIDSALVLEHL----EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            A+GID   +   L          PGRF     + RG  +  DY H  ++++ +++ I T
Sbjct: 687 WALGIDWDTIRHALAIFVNDAQTAPGRFNVF--DFRGATLIADYGHNPDAIQALVRAIDT 744

Query: 379 ITSGRIIVVFGCGGDR 394
           + + R  VV    GDR
Sbjct: 745 MPARRRSVVISGAGDR 760


>gi|154245789|ref|YP_001416747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159874|gb|ABS67090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthobacter
           autotrophicus Py2]
          Length = 537

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 35/257 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  I + +G    Q+G     +  +    L  P P          
Sbjct: 130 IAITGTNGKSTTTALITHILRVAG-RDVQMGGNIGTAILS----LAPPKP---------- 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  HV VE SS+ +D      +    G   N+  DH+D H T + Y   K RL   +
Sbjct: 175 ---GRVHV-VECSSYQVDL--APSLDPSVGVMLNITPDHLDRHGTIEHYAAVKERLVAGV 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               + A++  DD +S  +  RA  AG  V+ +  +           I    +  +  EG
Sbjct: 229 EGGGT-AVVGVDDDFSAAMADRAVEAGKHVVRISVKRALPD-----GIWLDGETLVVSEG 282

Query: 298 KDFDFLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               F  PL       G     NA  A   C  +G+   ++   +++   +  R E VG 
Sbjct: 283 GAERFRLPLAGIGSLRGTHNAQNAAAAFAACRGVGVAPEIITIAMKRFPGLAHRMEEVG- 341

Query: 352 NSRGGRIYVDYAHTSNS 368
            ++G  ++V+ +  +N+
Sbjct: 342 -NKGAVLFVNDSKATNA 357


>gi|313885109|ref|ZP_07818861.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619800|gb|EFR31237.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 457

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 117/289 (40%), Gaps = 54/289 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG-PT-STISSFAQDNRLTTPSPIYLAKAL 174
           ++A+TG++GK++  + + +I     + +  IG P  S +     D RL           +
Sbjct: 114 MIAITGSNGKTTTTALINEILGEKAILAGNIGIPILSVVGETQADKRLVM--------EI 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S    QG +                   K   G  TN+   H+DYH + +AY  AK+++ 
Sbjct: 166 SSFQLQGTSF-----------------FKPKIGVITNIYPTHLDYHGSMEAYIAAKLKIA 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---------GKFIHLKKVCAI 285
             L   E   ++Y    Y +E+++ A  +  + + + +           + ++L+    I
Sbjct: 209 ANL--DEQDFLVY---NYDQEILQEAAKS-IKAIKLPFSRTQVTPELVAEGLYLQDGQVI 262

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           ++ Q + +S++         +PG+  + N L A  + +   +D   V   +E    +P R
Sbjct: 263 YHNQPI-LSLDS------IKIPGDHNIENVLAALAVAVIEKVDLPQVKATIEAYKGMPHR 315

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            E V +  +G   Y D    S +  M        +  + ++  G G DR
Sbjct: 316 IEHVAS-FKGREFYND----SKATNMTATITALASFNQDLIYIGGGLDR 359


>gi|197303947|ref|ZP_03168979.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
 gi|197296915|gb|EDY31483.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
          Length = 458

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 124/313 (39%), Gaps = 32/313 (10%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138
           ++A I  + P L+    +K   L  + L G   K+ +  +AV+GT GK++  S + ++  
Sbjct: 75  YTAAINKSNPELMEAVGKKIPMLTRAELLGQLMKNYDTPIAVSGTHGKTTTTSMISEV-- 132

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              L +  + PT ++    +    T    I + K+ ++++       + E ++  L  H 
Sbjct: 133 ---LLAADMDPTISVGGILK----TIGGNIRVGKSGNFITE------ACEYTNSFL--HF 177

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              I +I     N+  DH+D+ +  +         F  LLP +   II  D    +E+ +
Sbjct: 178 YPKISVI----LNIEEDHLDFFKDLED-IRHSFHQFSALLPSDGTLIINGDIKDYQEIYE 232

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNA 315
                 C V++ G   +F +         K  V+  +   +         + G+  V NA
Sbjct: 233 ---GLDCNVITYGSSAEFDYSATEIQYDEKGFVSFELLKHNTSCGRVQLSVTGDHNVSNA 289

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A      +GI    + + L        RFE+ GT   G  +  DYAH    +   LK 
Sbjct: 290 LAAIATAELLGIPMDTIRKGLLSFSGTDRRFEYKGT-FNGVTVVDDYAHHPTEIAATLKA 348

Query: 376 IRTITSGRIIVVF 388
            +      I  VF
Sbjct: 349 AQHYPHNEIWCVF 361


>gi|161581989|ref|NP_232033.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|254849525|ref|ZP_05238875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|298500237|ref|ZP_07010042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
 gi|254845230|gb|EET23644.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|297540930|gb|EFH76984.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
          Length = 444

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 104 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 150

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 151 ------ALDLISPDVELYV-LELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDY 201

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 202 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 240

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 241 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDA 300

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 301 LKSYTGLTHRCQVVADN 317


>gi|298207680|ref|YP_003715859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
 gi|83850317|gb|EAP88185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
          Length = 422

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 52/254 (20%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I+   IF A+ G+  +G+ +   AI QGA  +V+             + +   
Sbjct: 13  ISTDTRKIKKDNIFFALKGDNFNGNTYADLAIDQGASYVVIDEE--------QFKKDDRY 64

Query: 93  LVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143
           ++VD+  + L   AS  R Y   P  I+++TG++GK++    +  +  +        G  
Sbjct: 65  ILVDDVLQTLQELASFHRNYLGIP--IISLTGSNGKTTTKELINAVLTKGYKTVATVGNL 122

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  IG   T+ S ++D  L              +   G  H+             ++ + 
Sbjct: 123 NNHIGVPLTLLSMSKDTELG-------------IVEMGANHIG-----------EIEMLC 158

Query: 204 LIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            IA    G  TN G+ H++   +++     K  L++ L   +    + ++DA   ++ K 
Sbjct: 159 NIAQPDYGYITNFGKAHLEGFGSEEGVVIGKSELYKHLKSHDKIVFVNSNDAKQVDLTK- 217

Query: 260 AHNAGCRVLSVGYQ 273
               G +  + G +
Sbjct: 218 ----GMKTFTFGLK 227


>gi|255326224|ref|ZP_05367310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296678|gb|EET76009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 23  MQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSL 79
           ++ RE ++  +  ++DSR +Q G +FVA  G   DGH FIP A  +GA  A+V       
Sbjct: 20  LEGREEQVFADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMAFERGATLALVEREVLDE 79

Query: 80  QDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           Q     +I+    +L + +  ++ S+   R  G+    ++ +TG++GK++    +  I  
Sbjct: 80  QGVPYPSIQVPDVVLAMGDLARY-SIEQMRAQGEL--TVIGITGSAGKTTTKDLLAAIFT 136

Query: 139 RSGLSSFQIG 148
             G +   +G
Sbjct: 137 PEGPTVAPVG 146


>gi|262273815|ref|ZP_06051628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Grimontia hollisae
           CIP 101886]
 gi|262222230|gb|EEY73542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Grimontia hollisae
           CIP 101886]
          Length = 445

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 22/120 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GKS+V S V ++   +G++   +G    I  FA  + L     +Y+ +  S+
Sbjct: 109 VIGITGSNGKSTVTSLVGEMANAAGIN---VGVGGNIG-FAALDMLANGHDLYVLELSSF 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E +S          + L A  F NL  DH+D ++    Y +AK+R+F++
Sbjct: 165 ---------QLETTSS---------LNLDAAVFLNLSEDHMDRYEGMADYRDAKLRIFDQ 206


>gi|33602560|ref|NP_890120.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
 gi|33576999|emb|CAE34079.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
          Length = 857

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 117/316 (37%), Gaps = 41/316 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA R  G+ P  ++AV GT+GK++       I   +G    ++G T++   +    R+ 
Sbjct: 461 MFAERDDGRIP--VVAVAGTNGKTTTVRLTAHILDCAG---HRVGMTNSDGVYVGKQRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DH------ 216
           T        A   L    V    +E +  G+ +  L   +      TN+G  DH      
Sbjct: 516 TGDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHLGLGYI 575

Query: 217 -------------IDYHQTQ-QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                        + Y Q    A  NA   +  E+      +I Y  +  +  VM     
Sbjct: 576 STVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRA 635

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G RV+       +     + A     +V  ++   D          FQV N + A    
Sbjct: 636 QGHRVV-------YRDGDSLVAAQGGAEVAFAL--ADIPLTRGGAIAFQVENTMAALAAA 686

Query: 323 IAIGIDSALVLEHL----EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            A+GID   +   L          PGRF     + RG  +  DY H  ++++ +++ I T
Sbjct: 687 WALGIDWDTIRHALAIFVNDAQTAPGRFNVF--DFRGATLIADYGHNPDAIQALVRAIDT 744

Query: 379 ITSGRIIVVFGCGGDR 394
           + + R  VV    GDR
Sbjct: 745 MPARRRSVVISGAGDR 760


>gi|153803325|ref|ZP_01957911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|254226621|ref|ZP_04920201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|254291799|ref|ZP_04962584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|124121143|gb|EAY39886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|125620840|gb|EAZ49194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|150422311|gb|EDN14273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|327484899|gb|AEA79306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           LMA3894-4]
          Length = 440

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 147 ------ALDLISPDVELYV-LELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 198 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 236

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 237 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDA 296

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 297 LKSYTGLTHRCQVVADN 313


>gi|320334254|ref|YP_004170965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deinococcus
           maricopensis DSM 21211]
 gi|319755543|gb|ADV67300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deinococcus
           maricopensis DSM 21211]
          Length = 429

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 26/148 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ VTGT+GK   +  +QQ+    G+ +   G      +F  D  L           L  
Sbjct: 97  IIGVTGTAGKGGTSVLIQQLLAHLGVRAHLGG------NF--DPPL-----------LDV 137

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G      E SS  L+  R+   + + G  TNLG DH+D H + +AY  AK+ L   
Sbjct: 138 I--DGAEVAVCEISSFQLE--RVQDFRPVVGVITNLGVDHLDRHGSVEAYHAAKLNLARR 193

Query: 237 LLPKES---PAIIYADDAYSKEVMKRAH 261
           + P+++   PA + A  A +      AH
Sbjct: 194 MTPQDTLVLPAGVNAPSAATTVRFDGAH 221


>gi|121587626|ref|ZP_01677390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|153818416|ref|ZP_01971083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|153830351|ref|ZP_01983018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255746924|ref|ZP_05420869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262161533|ref|ZP_06030643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
 gi|30316132|sp|Q9KPG5|MURD_VIBCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121548136|gb|EAX58209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|126511049|gb|EAZ73643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|148874158|gb|EDL72293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255735326|gb|EET90726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262028844|gb|EEY47498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
          Length = 440

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 147 ------ALDLISPDVELYV-LELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 198 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 236

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 237 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDA 296

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 297 LKSYTGLTHRCQVVADN 313


>gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
 gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
          Length = 487

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 152/378 (40%), Gaps = 38/378 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF----- 82
           R +   S D+R ++ G +F AI G   DGH F+  A+ +      V +    ++F     
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALDK-GAGAAVVAEARAKEFEGVGS 83

Query: 83  --SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
             +     + P+L  D  R+ L L A     +    I+AVTG+ GK+     ++ +    
Sbjct: 84  VLAVPGEGDDPVL--DAMRR-LGLAA---RARTEAAIVAVTGSVGKTGTKEALRHVLSAQ 137

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G +       ++++S+  +N      P+ L + +   +  GV  + +   +HG +   L 
Sbjct: 138 GATH------ASVASY--NNHWGV--PLTLTR-MPEATRFGVFEIGM---NHGAEILPLT 183

Query: 201 G-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++      T +   HI++ ++  A  +AK  +F  L P    A+I  D+   + ++  
Sbjct: 184 AMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPG-GVAVINRDNPNYERLLAH 242

Query: 260 AHNA-GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           A  +   RV++ G +    +   ++    +   V  +V G    +    PG     N+L 
Sbjct: 243 AQASRAGRVITFGEHAAADVRAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLG 302

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEM----- 371
                 A+G D A     L  L    GR E        G  + VD ++ +N   +     
Sbjct: 303 VLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALA 362

Query: 372 ILKNIRTITSGRIIVVFG 389
            L  I T   GR I V G
Sbjct: 363 TLAGIDTGVKGRRIAVLG 380


>gi|145223576|ref|YP_001134254.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
 gi|189029001|sp|A4TBE7|MURC_MYCGI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145216062|gb|ABP45466.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
          Length = 475

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 15/189 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D++ T + Y      +F++ + +  P    ++  DD  +  + +R    G R
Sbjct: 192 TNIEADHLDFYGTVENY----TAVFDQFVDRIKPVGALVVCVDDPGAAALAERTAALGIR 247

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCI 323
           VL  G   G    L     +       ISV  +D        +PG     NAL A     
Sbjct: 248 VLRYGSAPGLDATLLDWSQLGTGAVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAAT 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--- 380
             G D   VL+ L     V  RFE VGT   G R++ DYAH    +   +  +R +    
Sbjct: 308 QAGADIDAVLDGLAGFDGVRRRFELVGTAG-GVRVFDDYAHHPTEVRAAITALRAVAEQT 366

Query: 381 -SGRIIVVF 388
              R + VF
Sbjct: 367 PGARTVAVF 375


>gi|89075543|ref|ZP_01161948.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
 gi|89048683|gb|EAR54255.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
          Length = 462

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PL G+  V NAL+A G    +G+   L  E L K      R E  G    G  +Y D+A
Sbjct: 285 WPLVGDHNVNNALMAIGAARHVGVTPDLACEALAKFINTKRRLELKG-EVNGVTVYDDFA 343

Query: 364 HTSNSLEMILKNIRT-ITSGRIIVVF 388
           H   ++E+ L  +R  +   RI+ V 
Sbjct: 344 HHPTAIELTLGGLRAKVNQSRILAVL 369


>gi|89067944|ref|ZP_01155388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046542|gb|EAR52598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
          Length = 480

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R +  G +FVA+   + DGH F+ QA+ +GA A +V+           + ++ P+
Sbjct: 26  VSIDTRTLAPGDLFVALKAAR-DGHEFVAQALEKGAAAALVTH------RPEGVAADAPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           LVV +    L         +    + A+TG+ GK+S    ++   +R G
Sbjct: 79  LVVPDVLAALEALGRAARARTNARVAAITGSVGKTSSKEMLRAALERQG 127


>gi|260495142|ref|ZP_05815270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
 gi|260197199|gb|EEW94718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
          Length = 432

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 49/248 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           ++A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 93  VIAITGTNGKSTTTAKISDMLNYAGYKAAYAGN--------------------IGRSLSE 132

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ +++   Y++ K    
Sbjct: 133 VLLKEKDLDFISLELSSFQLEN--IENFKPYISMIINMGPDHIERYKSFDEYYDTKFN-- 188

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQV 291
             +   ++    + ++    E+ KRA     + +SV    K   F+   K+C  H K  +
Sbjct: 189 --ITKNQTEDFYFIENIDDVEIEKRAKQVKAKRISVSKFKKADIFVENDKIC--HGKDSI 244

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---------ALVLEHLEKLHVV 342
                  D D L  L G   + N L        + ID          A  LEH  +L   
Sbjct: 245 I------DVDKL-SLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFN 297

Query: 343 PGRFEFVG 350
            G+ +F+ 
Sbjct: 298 YGKLKFIN 305


>gi|212550833|ref|YP_002309150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549071|dbj|BAG83739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 452

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 134/332 (40%), Gaps = 54/332 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY- 176
           + +TG++GK++ A+ +  I + +G     +G                     + K+L+  
Sbjct: 113 ICITGSNGKTTTATLIYYILKYAGFDVALVGN--------------------VGKSLAMQ 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFE 235
           ++ +   +  +E SS  LD   +   K       N+  DH+D ++ + Q Y N+KMR+ +
Sbjct: 153 VAEKDCNYYVIELSSFQLDG--MYHFKADIAVLLNITSDHLDCYEYEIQNYINSKMRIIQ 210

Query: 236 ELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               K    I ++DD   ++E+ K          S          K+V      +   I 
Sbjct: 211 N-QTKNDIFIYWSDDLVIAREIQKMKPTVTFYPFS--------EQKQVGVKAYTENGNIK 261

Query: 295 VEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           VE  +  F  P     L G+  +YN+L A  +   +G+   ++         +  R E V
Sbjct: 262 VETANGMFSMPQKYLVLRGKHNLYNSLAATAVAKLLGVKDEMLEHSFLNFKAIEHRMEKV 321

Query: 350 GTNSRGGRIYVDYAHTS-----NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
             + +G    VDY + S     NS   +L+++RT     II++ G G D+      I G 
Sbjct: 322 A-HIKG----VDYINDSKATNVNSCFYVLQSMRT----PIILILG-GVDKGNDYSEIEGL 371

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +      +  +  DN +  D    +  +I+ +
Sbjct: 372 VREKCRALIFLGVDNSKLHDFFDGKVNVIYDV 403


>gi|254469048|ref|ZP_05082454.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
 gi|207087858|gb|EDZ65141.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
          Length = 461

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 108/276 (39%), Gaps = 33/276 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK+S  S +  I   +GL  ++ IG    I+S  Q  RL              
Sbjct: 108 IAIAGTHGKTSTTSILATIMNDAGLDPTYVIG--GRINSLRQSARLGKSK---------- 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  H+ VEA         L+   ++    TN+  DH++ +   +         F  
Sbjct: 156 -------HMIVEADESDASFLHLNPSNVLV---TNIDYDHMETYGHDEERLKQTFVDFIH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV---T 292
            +P  +   +  DD   K + K        +++ G+  K   +  +V    NK      +
Sbjct: 206 QIPFYNEVFLCIDDKNIKSIQKLIARP---IITYGFSKKADYYPDRVVIKKNKSSFRVNS 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           IS + + F     +PG   + N L A  + +++ I   ++ + L+K   V  RF+     
Sbjct: 263 ISKKIRSFSVEIDMPGRHYILNTLGAIAIALSLNIKPQIISKALKKFKGVSRRFDLYEEF 322

Query: 353 SRGGR---IYVDYAHTSNSLEMILKNIRTITSGRII 385
             G +   +  DY H    ++ +L +I+    G+ I
Sbjct: 323 KLGEKNIHLIDDYGHHPTEIKAVLDSIKKGFPGKKI 358


>gi|145588356|ref|YP_001154953.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|189029017|sp|A4SV75|MURC_POLSQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145046762|gb|ABP33389.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 478

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 124/319 (38%), Gaps = 62/319 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSG 125
           AEA+V+S+A         +  N P ++     K   +  + + G+    +  +A+ GT G
Sbjct: 65  AEAVVISTA---------VAGNNPEVLAARAAKIPVIQRAVMLGELMRLKQGIAIAGTHG 115

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +     L  +F IG    ++S   + RL                      
Sbjct: 116 KTTTTSLVASVLAEGDLDPTFVIG--GKLNSAGANARLGRGD-----------------F 156

Query: 185 VSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           + VEA     D+     ++L       TN+  DH+D +Q   A        F + +P   
Sbjct: 157 IVVEA-----DESDASFLQLFPAMEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYG 211

Query: 243 PAIIYADDAYSKEVMK----------RAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQ 289
            A++  DDA  ++++            + +A  R  +V   G  +H    ++    H  +
Sbjct: 212 VAVLCIDDANVRDIIPFVSQPILRYGLSEDADIRASNVRADGTRMHFTVERRTVRRHGNK 271

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              ++V          LPG   V NAL A G+   +G+    +++ L +   V  RF+  
Sbjct: 272 PGPLNVT-------LNLPGLHNVRNALAAIGIATELGVGDQAIIKALSEFSGVGRRFQRY 324

Query: 350 G--TNSRGGRIYV--DYAH 364
           G    + GG+  +  DY H
Sbjct: 325 GDIPLASGGKFTLIDDYGH 343


>gi|159903953|ref|YP_001551297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889129|gb|ABX09343.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 457

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 116/293 (39%), Gaps = 54/293 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDN-RLTTPSPIYLAK 172
           + VTGT+GK++V   +  +   + +++   G    P S I   A D+ R +   P +L  
Sbjct: 108 IGVTGTNGKTTVTHMLHHVLNSNQINTAMGGNVGIPASQI---ALDSIRSSRTEPNWLVM 164

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            LS    +   ++S +                  G +T L  DH++ H + + Y + K R
Sbjct: 165 ELSSYQLETSPNISPK-----------------IGIWTTLTPDHLERHGSLENYSDIKKR 207

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L E      S  I   DD + K       NA  +++    +G ++        +N+    
Sbjct: 208 LLE----NSSIRIYNLDDHFLK-------NARSKLM----EGIWVSTNGAAINNNQADFW 252

Query: 293 ISVEGKDFD--------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           I+ +GK ++         L  +PG   + N L+       IG+    + + +     VP 
Sbjct: 253 ITSKGKLYEKGEEILDTTLLNIPGRHNLQNLLLVTAAAREIGLSPRDIEQAIASFKGVPH 312

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           R E +  N +G  I+ D   T+     I   +  + S  I++    GG   +G
Sbjct: 313 RLEKIA-NIKGIEIFNDSKATNYEAAKI--GLEAVPSPTIVI---AGGQSKKG 359


>gi|192292413|ref|YP_001993018.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           TIE-1]
 gi|229620427|sp|B3QFN0|MURC_RHOPT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|192286162|gb|ACF02543.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           TIE-1]
          Length = 467

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 132/337 (39%), Gaps = 54/337 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT
Sbjct: 65  KGADVLVVSTA---------IKRDNPELLAARAQRIPVVRRAEMLAELMRLKSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +     L    I     I+++  + RL                  G  
Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVIN-GGIINAYGTNARLG-----------------GGD 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            + VEA     D+     +KL A     TN+  +H+D+ +T  A  +A  R F E +P  
Sbjct: 158 WMVVEA-----DESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             A++  D    + ++ +  +           A  R+L +   G     K   A  +++ 
Sbjct: 212 GFAVMCIDHPVVQTLVGKIEDRRIITYGENPQADARLLDLAASGGGSTFK--VAFRDRKA 269

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T     +  D   P+PG     NA  A  +   +G+    + + L     V  RF   G
Sbjct: 270 GTAH---EIADLKLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               G  I  DY H    +  +LK  R  TSG++I V
Sbjct: 327 -EWNGVTIIDDYGHHPVEIAAVLKAARQSTSGKVIAV 362


>gi|332305223|ref|YP_004433074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172552|gb|AEE21806.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 441

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 30/169 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS   SLQ  +        + VV +    + LFA  ++   P  +LAVTG++GKS
Sbjct: 64  ADMLVVSPGLSLQTAAIQEAIEAGVQVVGD----IELFA--MFNNTP--VLAVTGSNGKS 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +VA+   ++C   G  +   G             + TP+   L K            + +
Sbjct: 116 TVATLAYEMCIAGGKKALLGG------------NIGTPALELLEKDADI--------IVL 155

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           E SS  L+      ++ +     NL  DH+D H    +Y  AK+R++++
Sbjct: 156 ELSSFQLESTHT--LRPLVACMLNLSDDHLDRHGDMLSYQRAKLRIYKD 202


>gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 27  ERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-EAIVVSSAYSLQDFS 83
           +R IN   VS+D+R+I    I+ A+ G   +G+ F  +A+A+GA  A++   AY + D  
Sbjct: 7   QRYINSAGVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIAD-- 64

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                    L+VD+    L   A+    K    ++ +TG++GK++    ++ +  +
Sbjct: 65  -------KTLLVDDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQ 113


>gi|149921020|ref|ZP_01909480.1| UDP-N-acetylmuramate--alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149818152|gb|EDM77608.1| UDP-N-acetylmuramate--alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 471

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 45/287 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSG 125
           A+ +V+SSA         I+ +   +V    RK   +  + + G+    +  L V G+ G
Sbjct: 66  ADVVVISSA---------IKPDNAEVVAARQRKIPVIPRAEMLGELMRLQQGLLVAGSHG 116

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +   +GL  +  IG    ++SF  + RL     I++A+A     S     
Sbjct: 117 KTTTTSMVAAVLHGAGLDPTVVIG--GKVNSFDSNARLGA-GEIFVAEADESDGS----- 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             V   +H +               TN+  +H+D++ + +A  +A +  F   +P    A
Sbjct: 169 FLVLPPTHAI--------------ITNIDAEHLDHYGSLEALLDAFVG-FANRVPFYGMA 213

Query: 245 IIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            I  DD   + V+    KR  + G       Y+   I L     +  +    ++  G+D 
Sbjct: 214 AICVDDPNVRAVLPRLTKRTVSYGIVSEDADYRASEIEL-----VGGRSHFRVTAHGEDR 268

Query: 301 D-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             F   +PG   V NAL    LC   G+ + +  + L +   V  RF
Sbjct: 269 GRFELAMPGRHNVLNALATIALCDEQGVSTEVTRKALREFQGVQRRF 315


>gi|304385172|ref|ZP_07367518.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
 gi|304329366|gb|EFL96586.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
          Length = 464

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 48/286 (16%)

Query: 117 ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIG----PTSTI--SSFAQDNRLTTPSPIY 169
           ++ VTG++GK++V + +Q  + Q+   +++  G    P +T+   + A D  +   S   
Sbjct: 118 LIGVTGSNGKTTVTTMIQLMLDQQDHHAAYVAGNIGVPATTVVQKATANDRVVMELSSFM 177

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           LA                     G+DQ     I ++   F+N    H+D+H+T++ Y N 
Sbjct: 178 LA---------------------GIDQLH-PHIAVVNNIFSN----HLDWHKTRENYVND 211

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           KMR+ E    K+   +I  D+   +++ +R      +V+    QG    L +  A     
Sbjct: 212 KMRITENQT-KDDYFVINWDNPEWQQLAQR---TAAQVVPFSRQG----LVENGAYAKDG 263

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q+    E         +PG+  V NAL A  +    G+ +  + + L+    V  R ++V
Sbjct: 264 QLYFKNERIMAADEIGVPGDQNVENALAAIAVAKIEGVANKHIKQVLQTFSGVKHRIQYV 323

Query: 350 GTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDR 394
            T + G + Y D   T   + ++ LK  +     R I++   G DR
Sbjct: 324 KTLA-GRQFYNDSKATDIEATQVALKAFQ-----RPIILIAGGLDR 363


>gi|257455148|ref|ZP_05620386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
 gi|257447481|gb|EEV22486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
          Length = 477

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 101/277 (36%), Gaps = 26/277 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++LAV GT GK++  + +  I   +G+ + F IG    + +   D RL         KA 
Sbjct: 104 HVLAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVDT--PDERLK--------KAF 153

Query: 175 ---SYLSSQGVT----HVSVEASSHG---LDQH-RLDGIKLIAGSFTNLGRDHIDYHQTQ 223
              SYL S        +  +EA  +     D+  +    +       NL  DH D     
Sbjct: 154 AHSSYLGSDTTADHEGYFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFPNL 213

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            A    +      ++P     I+ AD    +E +K+         ++         +   
Sbjct: 214 AA-IQTQFHHMVRMIPSNGKIIMPADTESLEETLKKGCWTPIWRTAIASTNPHADWQAKL 272

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              +  Q  +  +G      + + G   V N LVA      IG+  A   E L     + 
Sbjct: 273 MKQDGSQYEVMFDGHKGQVHWQMSGLHSVNNGLVAIAAAYNIGVSVAQACEALSNFAGIK 332

Query: 344 GRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIR 377
            R E VGT    G+   +Y D+AH   ++E  L   +
Sbjct: 333 RRMELVGTIDNHGKHIEVYDDFAHHPTAIETTLDGAK 369


>gi|33597711|ref|NP_885354.1| cyanphycin synthetase [Bordetella parapertussis 12822]
 gi|33574139|emb|CAE38469.1| cyanphycin synthetase [Bordetella parapertussis]
          Length = 857

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 117/316 (37%), Gaps = 41/316 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA R  G+ P  ++AV GT+GK++       I   +G    ++G T++   +    R+ 
Sbjct: 461 MFAERDDGRIP--VVAVAGTNGKTTTVRLTAHILDCAG---HRVGMTNSDGVYVGKQRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DH------ 216
           T        A   L    V    +E +  G+ +  L   +      TN+G  DH      
Sbjct: 516 TGDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHLGLGYI 575

Query: 217 -------------IDYHQTQ-QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                        + Y Q    A  NA   +  E+      +I Y  +  +  VM     
Sbjct: 576 STVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRA 635

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G RV+       +     + A     +V  ++   D          FQV N + A    
Sbjct: 636 QGHRVV-------YRDGDSLVAAQGGAEVAFAL--ADIPLTRGGAIAFQVENTMAALAAA 686

Query: 323 IAIGIDSALVLEHL----EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            A+GID   +   L          PGRF     + RG  +  DY H  ++++ +++ I T
Sbjct: 687 WALGIDWDTIRHALAIFVNDAQTAPGRFNVF--DFRGATLIADYGHNPDAIQALVRAIDT 744

Query: 379 ITSGRIIVVFGCGGDR 394
           + + R  VV    GDR
Sbjct: 745 MPARRRSVVISGAGDR 760


>gi|127514072|ref|YP_001095269.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
 gi|126639367|gb|ABO25010.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
          Length = 479

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 115/293 (39%), Gaps = 58/293 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK+S +S +  I +  G +  F IG      +F    RL   SP ++ +A  
Sbjct: 128 VLAVSGTHGKTSTSSMLAWILEDCGYAPGFLIG--GVPQNFGVSARLGD-SPFFVVEADE 184

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY---FNAKMR 232
           Y S+        + S     Q R     L+     NL  DH D     +A    FN  +R
Sbjct: 185 YDSA-----FFDKRSKFVHYQPR----TLV---INNLEFDHADIFDDLKAIQRQFNHVIR 232

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV------LSVGYQGKFIHLKKVCAIH 286
                +P +   I  +     +EV+    + GC        L  G  G +  L       
Sbjct: 233 T----VPGQGKVIWPSASDAVREVI----DMGCWSEQETYNLMAGSPGWYSEL------- 277

Query: 287 NKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                 +S +G  F+  F           L G+  V NA +A      +G+  A  +E L
Sbjct: 278 ------LSEDGHSFELFFDGESQGVLDWSLIGQHNVENATMAIAAARHVGVKPAAAIEAL 331

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +      R E +GT +    +Y D+AH   ++   L+  R  +  GRIIVV 
Sbjct: 332 TRFAPPKRRMELIGTVNDIA-VYDDFAHHPTAIATTLQGCRAKVGEGRIIVVL 383


>gi|227499420|ref|ZP_03929531.1| possible tetrahydrofolate synthase [Anaerococcus tetradius ATCC
           35098]
 gi|227218482|gb|EEI83725.1| possible tetrahydrofolate synthase [Anaerococcus tetradius ATCC
           35098]
          Length = 428

 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 26/161 (16%)

Query: 306 LPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVD 361
           L G  QVYNA  A  LC+  I  +  L  + + K       PGR + +   S+  RI +D
Sbjct: 254 LTGIHQVYNAATAL-LCLDHIKDEYNLTKDDIYKGIFRADNPGRLQMI---SKKPRILLD 309

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-----QGKRPIMGKIALDLADIAIVT 416
            +H   +++ ++K++   T  R+IV F    D+D     +    + GKI L         
Sbjct: 310 GSHNKEAIDALIKSLENYTYDRLIVGFSILKDKDYPYIIEKLSKVAGKIIL------TQI 363

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           +DNPR+ D + +  EI+       EK + +E I+  IE  N
Sbjct: 364 EDNPRAFDLDDL-YEIVK------EKFDDVEKIKDPIEAYN 397


>gi|322421364|ref|YP_004200587.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
 gi|320127751|gb|ADW15311.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 110/251 (43%), Gaps = 18/251 (7%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +S + V  V VE SS  L+   ++  +       NL  DH+D + + Q Y +AK+R+FE 
Sbjct: 152 MSGEEVDRVVVELSSFQLEG--IESFRPHVAVLLNLTEDHLDRYHSFQEYIDAKLRIFEN 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             P +  A++  DD     V   A     ++  +    +F  L++  + +    +T + +
Sbjct: 210 QGPADF-AVLNIDDPL---VAACASKLKAQLFPM---SRFHELQEGIS-YRDGFITFARK 261

Query: 297 GKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           GK   F    F L G   + N + +    + +G D     + ++    +P R EFV    
Sbjct: 262 GKVLRFGTDGFKLKGVHNLDNIMASMASTLLMGCDGDCAYQAVKSFKGLPHRMEFV-EEV 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G   Y D   T  ++  ++K++ +  SG  I +   G D+     P+   ++  ++ + 
Sbjct: 321 NGVSYYEDSKGT--NVGSVVKSLESFDSG--ITLIAGGKDKGGSYEPLAKLVSERVSHLV 376

Query: 414 IVTDDNPRSED 424
           ++ +   R ++
Sbjct: 377 LIGEARQRMKE 387


>gi|308177861|ref|YP_003917267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
 gi|307745324|emb|CBT76296.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
          Length = 509

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 26/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT+GK++     + I +  GL +  +G             + TP    + + + Y 
Sbjct: 139 LVITGTNGKTTTVGMTESILRADGLKAIAVG------------NVGTPILDAVREPVDY- 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                   +VE SS  L  H    I  +A    NL  DH+D+H   + Y  AK +++E  
Sbjct: 186 -----DVFAVELSSFQL--HYTHTISPVASVVLNLAEDHVDWHDGFENYKAAKAKIYE-- 236

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
             +   A I+  AD+A  K V       GCR +
Sbjct: 237 --RTQIAAIFNAADEATIKMVEDADVVEGCRAI 267


>gi|297544236|ref|YP_003676538.1| FolC bifunctional protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842011|gb|ADH60527.1| FolC bifunctional protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 427

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 162/443 (36%), Gaps = 123/443 (27%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L ++N R+ LS      Y  +P+    I+ V GT+GK S ++F+  I Q++G     +  
Sbjct: 20  LGLENIRRLLS------YMGNPQKSLKIIHVAGTNGKGSTSAFISNILQQAGYK-VALYT 72

Query: 150 TSTISSFAQDNRLT-------------------------------TPSPIYLAKALSYLS 178
           +  +  F +  R+                                T   +  A A  Y  
Sbjct: 73  SPYLEEFEERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFY 132

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-- 236
            + V  V +E    G    R D    I  S  ++    IDY  T +         +E+  
Sbjct: 133 DEKVDFVVLEVGLGG----RFDATNAIDSSLVSVITT-IDYDHTDRLGHTLGEIAYEKAG 187

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           ++ ++   + +     + +V+  A    C V +               +  K  V I  +
Sbjct: 188 IIKQKGVVVSFYQQPEAMKVIIEA----CEVRNA-----------YLTVLEKSNVIIKEQ 232

Query: 297 GKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----- 342
             DF         D    L GE Q+YNA              AL +E +EKL +      
Sbjct: 233 NPDFQIFDYKKYKDLKITLLGEHQIYNA--------------ALAIESVEKLRMYGYEIT 278

Query: 343 -------------PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
                        PGR E +    +   + +D AH    +  + ++++     R+I+V G
Sbjct: 279 KKDIKEGLYRAKWPGRLEVM---RKKPYVVIDGAHNPQGMTALKESLKLFKYDRLILVIG 335

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--- 446
              D+D  K   M  I +  ADI I T   P SE     RA     +   I+K N I   
Sbjct: 336 MLKDKDTQK---MLDIIVPEADIIITT--TPISE-----RAYKASELAQKIDKKNVIPIE 385

Query: 447 ---EAIRTAIEMLNKQDVLVVAG 466
              +A++ A+++  ++D+++  G
Sbjct: 386 NIEKAVKYALDIAKEEDMVLFCG 408


>gi|156973219|ref|YP_001444126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           harveyi ATCC BAA-1116]
 gi|166224769|sp|A7MXR3|MURD_VIBHB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156524813|gb|ABU69899.1| hypothetical protein VIBHAR_00900 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 121/310 (39%), Gaps = 69/310 (22%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL+   +G    I   A D                 
Sbjct: 110 VIAITGSNGKSTVTDLTGVMAKAAGLT---VGVGGNIGVPALD----------------- 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-- 234
           L  Q      +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F  
Sbjct: 150 LLEQDADLYVLELSSFQLESTL--SLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDN 207

Query: 235 ----------EELLP-KESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                     +E  P  E+P + +  D  AY  E                         +
Sbjct: 208 AELAVVNRDDQETFPDTETPLVTFGSDEQAYGLEADGN---------------------R 246

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              + + Q+V  S E K       L G+  + NALV   L  A  +D    L  L+    
Sbjct: 247 TWLLDHGQRVIASDELK-------LVGKHNLANALVVLALLKAADVDYHKSLNALKTYTG 299

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRD-QGKR 399
           +  R + V  N RG + +V+ +  +N    I       ++G++ ++V G G   D    +
Sbjct: 300 LTHRCQVVADN-RGVK-WVNDSKATNIASTIAALSGLESTGKLYLLVGGVGKGADFTPLK 357

Query: 400 PIMGKIALDL 409
           PI   + L L
Sbjct: 358 PIFATLNLQL 367


>gi|42783006|ref|NP_980253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 10987]
 gi|60390050|sp|Q732F6|MURD_BACC1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|42738933|gb|AAS42861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10987]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNXTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V          LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVEVGD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|134294648|ref|YP_001118383.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
 gi|166222968|sp|A4JB95|MURC_BURVG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134137805|gb|ABO53548.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 126/315 (40%), Gaps = 57/315 (18%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTR----KFLSLFASRLYGKHPENILAV 120
           +GA A+VVS+A         +RS+ P +L   + R    +   + A  +  K     +A+
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARHQRVPIVQRAVMLAELMRLKQG---IAI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LS 175
            GT GK++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S
Sbjct: 111 AGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDAS 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +L+   V  V                        TN+  DH+D +    A        F 
Sbjct: 168 FLNLYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++        R  LS   Q   +  + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSADAQ---VRAENIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--T 351
            EG+     +  LPG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRSPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 352 NSRGGRIYV--DYAH 364
           ++ GG+  +  DY H
Sbjct: 322 SADGGQYTLIDDYGH 336


>gi|313677380|ref|YP_004055376.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
 gi|312944078|gb|ADR23268.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV- 360
           F   +PG   V NA+VA  +   +G+    +LE +     V  RFE+V    R   +++ 
Sbjct: 279 FQLSVPGFHNVENAVVAIAIANQLGLSDKEILEGIRTYQGVKRRFEYV--IQRNDFVFID 336

Query: 361 DYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH  + ++ +L ++R +  G ++ V+F            +    +L LAD  ++ D  
Sbjct: 337 DYAHHPSEIKAMLTSVRALYPGKKVSVLFQPHLYSRTRDFAVEFSQSLSLADEVMLLDIY 396

Query: 420 PRSEDP-EKIRAEII 433
           P  E P E + +EI+
Sbjct: 397 PARELPIEGVSSEIL 411


>gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 448

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 158/369 (42%), Gaps = 47/369 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   S +S+ I    +F+ + G++ DGH F+ +A+  GA + +     S +DF       
Sbjct: 25  VKNFSINSKSIGKDTLFIPLKGSRFDGHDFVKEALQNGAISFI-----SQKDFDDL---K 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P + V +T   L+L +   + +   N   ++ VTG+ GK+S   ++  +       S +
Sbjct: 77  VPYVKVGDT--LLALQSLAYFARRKLNDLKVVGVTGSVGKTSTKEYIFNVL------SLR 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205
                   +F  +N +  P  I     L+      V    +  S+ G +  +L  I K  
Sbjct: 129 YRAFKNQGNF--NNHIGLPISI-----LNMPEDTQVAVFEMGMSNFG-EISKLSQIAKPD 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHN 262
            G  TN+G  HI+  +++   F AK  + ++ +P+    II  D+      K+  KR   
Sbjct: 181 IGVITNIGVAHIENLKSRYNIFLAKSEI-QDGMPESGILIINNDNDILNLHKKEFKR--- 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +V+++G + +     +    H   Q   S E   + +         +YN+L A  + 
Sbjct: 237 ---KVVTIGIENESNFRAQNVQKH---QNGFSFEVGGYTYFIKSFNFHDIYNSLFAIAVG 290

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             + ID  L+ E + +   +  RFE +   ++G    VD  + +++  M L  I +I   
Sbjct: 291 TILEIDRELIKEAILQKERLKRRFEVI---NKGSITVVDDTYNASTHSM-LSAIDSICEF 346

Query: 382 -GRIIVVFG 389
            G+ I+V G
Sbjct: 347 DGKKILVLG 355


>gi|298372208|ref|ZP_06982198.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275112|gb|EFI16663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 468

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 38/272 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + +TG++GK++       I + +G   + +G    +  SFA                   
Sbjct: 116 ICITGSNGKTTTTMLTYHILRNAG---YNVGLAGNVGKSFAMQ----------------- 155

Query: 177 LSSQGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMR 232
           ++     +  +E SS  LD     R D I +I    TN+  DH+D Y    Q Y ++K R
Sbjct: 156 VAEDNFDYYILEISSFQLDGMYSFRAD-IAII----TNITPDHLDRYDYKFQNYVDSKFR 210

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + +     +       D   + E+ KR  +   R +      +  ++     +  K  + 
Sbjct: 211 ILQNQTENDFFIFWAGDSTVANEIEKRGTSIKARKIPFDLTSQTDNVPNYAFVDGKDIIF 270

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFE 347
            ++  K F  +     PL G   +YN++ AAGL   + G+    +   LE    V  R E
Sbjct: 271 NNLTNKLFLEMETNNLPLKGNHNLYNSM-AAGLASQVAGVSKDAIRRSLETFEGVEHRME 329

Query: 348 FVGTNSRGGRIYVDYAHTS-NSLEMILKNIRT 378
           +V T  RG R   D   T+ NS    L+++ T
Sbjct: 330 YVAT-VRGVRYINDSKATNVNSCWYALQSMTT 360


>gi|258546154|ref|ZP_05706388.1| UDP-N-acetylmuramate--alanine ligase [Cardiobacterium hominis ATCC
           15826]
 gi|258518579|gb|EEV87438.1| UDP-N-acetylmuramate--alanine ligase [Cardiobacterium hominis ATCC
           15826]
          Length = 479

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 112/287 (39%), Gaps = 49/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  S +  I   +GL  +F IG   T    A  N         +A+A   
Sbjct: 121 IAVAGTHGKTTTTSLIASILADAGLDPTFVIGGVLTA---AGSNARLGDGQYLVAEADES 177

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V     +  L+ +         GSF NL          +Q +      
Sbjct: 178 DASFLHLQPMMSVVTNIDADHLENY--------GGSFDNL----------KQGFVR---- 215

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--- 289
            F   LP    A++  DD   + ++    + G  V + G    F    +V A++ +Q   
Sbjct: 216 -FLHNLPFYGLAVLCIDDEGVQSILG---DVGRPVRTYG----FSEAAEVRAVNVRQVGL 267

Query: 290 ----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                V   V G+ F     +PG+  V NAL A  +   +G+  A +   L +   V  R
Sbjct: 268 KMHFDVVDKVSGETFPLALSMPGKHNVLNALAAFIITSELGLTRAEITAGLAQFKGVGRR 327

Query: 346 FEFVG-TNSRGGR--IYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
           F   G      GR  ++ DY H  N +  +L+      +G RI  VF
Sbjct: 328 FTHHGIIEHEHGRAEVFEDYGHHPNEIRAVLQAAAEGFAGRRIFAVF 374


>gi|49475854|ref|YP_033895.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella henselae str.
           Houston-1]
 gi|59798262|sp|Q6G2Q6|MURC_BARHE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49238662|emb|CAF27908.1| UDP-N-acetylmuramate--alanine ligase [Bartonella henselae str.
           Houston-1]
          Length = 475

 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+ R+H+D++ +  A  +A  R F E +P    A++  D    + +  R  +       
Sbjct: 181 TNIDREHLDHYGSFAAVRDA-FRQFVENVPFYGFAVLCIDHPEVQSLASRIDDRWVITYG 239

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R L++   G+  +          ++     E K+   + P+ G+  V NA  A
Sbjct: 240 ANPQADIRFLNLSMDGQKTYFD---VFMRSRKTGRETELKNL--VLPMSGQHNVSNATAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +GI +  + + L     V  RF  +G+  RG  I+ DY H    ++ +L   R 
Sbjct: 295 IAIAHELGISNESIKKGLAGFGGVKRRFTQIGS-WRGVEIFDDYGHHPVEIKAVLCAARE 353

Query: 379 ITSGRIIVV 387
              GR+I +
Sbjct: 354 SAKGRVIAI 362


>gi|255657475|ref|ZP_05402884.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-23m63]
 gi|296449070|ref|ZP_06890860.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296879893|ref|ZP_06903866.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
 gi|296262163|gb|EFH08968.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296429182|gb|EFH15056.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 157/414 (37%), Gaps = 68/414 (16%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138
           ++A +  +   LV    +  L +  +   G   +  +N +AV+GT GK+S  S +  I +
Sbjct: 66  YTAAVHPDNEELVAAKEKNKLVMNRATFLGQIMREYKNSIAVSGTHGKTSTTSMLSTIFE 125

Query: 139 RSGLSSFQI--GPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            + L    +  G  S I         N   T +  Y+    S+L+      + +      
Sbjct: 126 YADLDPTILVGGNLSMIGGNVKIGNSNHFITEACEYVD---SFLNFNPKISIVLNVEEDH 182

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF--NAKMRLFEELLPKESPAII-YADD 250
           LD     GI  I  SF   G+         + YF  N      +++L      II Y  D
Sbjct: 183 LDY--FSGIDEIKASFNKFGK-----LLPPEGYFIINGDDENIDDILYDVKATIIKYGRD 235

Query: 251 AYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           + +  V+K  H  N+G  +  + YQG+ +                       +F   + G
Sbjct: 236 SDNDAVIKDIHFDNSGHGIFRIEYQGRDLG----------------------EFELSVYG 273

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              +YNA  A    +  GID   + ++++    V  RFE  G   +   +  DYAH    
Sbjct: 274 LHNIYNASSAIMAALVSGIDLETIRKNIKIYKGVGRRFETKGY-YKNALVVDDYAHHPTE 332

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTD-DNPRSEDP 425
           L+  L   + +    +  +F          + ++G+   A   AD  I+TD    R +DP
Sbjct: 333 LKATLAAAKKLKKSTLWCIFQP--HTYTRTKSLLGEFSEAFYAADKVIITDIYAAREKDP 390

Query: 426 EKIRAEIIHGIPGFIEK--GNRIEAI---------RTAIEMLNKQDVLVVAGKG 468
             I ++        +EK   N ++AI         +   E +   D+++ AG G
Sbjct: 391 GDIHSK------DLVEKLYQNNVDAIYIKEFEDIVKYLRENVKDNDLVITAGAG 438


>gi|163941652|ref|YP_001646536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           weihenstephanensis KBAB4]
 gi|226711883|sp|A9VU74|MURD_BACWK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|163863849|gb|ABY44908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 25/194 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  +II ADDA   +VM   A++ G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTETDY-SIINADDA---DVMALSAYSKGQ 239

Query: 266 RVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +VL    +    G +I   K  A++ K +  + V     D +  LPG+  + N L A  +
Sbjct: 240 KVLFSTTKEIEDGAYI---KDNALYFKGEKVVKVS----DIV--LPGKHNLENILAAMSI 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              +G+ +  +   L+    V  R E+V T N+R  + Y D    S +  M+        
Sbjct: 291 AKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNR--KFYND----SKATNMLATEKALSA 344

Query: 381 SGRIIVVFGCGGDR 394
             + IV+   G DR
Sbjct: 345 FTQPIVLLAGGLDR 358


>gi|85708883|ref|ZP_01039949.1| hypothetical protein NAP1_06570 [Erythrobacter sp. NAP1]
 gi|85690417|gb|EAQ30420.1| hypothetical protein NAP1_06570 [Erythrobacter sp. NAP1]
          Length = 474

 Score = 44.3 bits (103), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 186/466 (39%), Gaps = 65/466 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ---AIAQGAEAIVVSSAYSLQDFSATIRS 88
           EV+   R    G          ++G    PQ    I  G + ++ S+A  ++D    +R 
Sbjct: 37  EVAGSDRSYDQGRTPEKFAWLADNGFALFPQDGSGITSGKQILIASAA--VEDTVPEVRR 94

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +     +R  L    S L+ +  E+ +AV GTSGKS+V   +  I   +G       
Sbjct: 95  AKELGCQRMSRAEL---LSNLFNR-AEHSVAVGGTSGKSTVTGMIAWIMAEAGRD----- 145

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIAG 207
           PT  ++     N     +P   A+  S     G + VS V+ S   +  +R        G
Sbjct: 146 PT-VMNGAVMKNFADGSNPFASARMGS-----GRSFVSEVDESDGSIALYRPS-----VG 194

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH    + +Q        LF + +     A+I  D+  ++ + +R  N     
Sbjct: 195 VLLNVSLDHKSIEELRQ--------LFGDYVAISDRAVINFDNEEARFLAERVKN--VVS 244

Query: 268 LSVGYQGKFIHLKKVC----AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +V  Q   I ++       A+  +  V  +   + F  + P+PG   + NAL A     
Sbjct: 245 FAVHDQSADITVEPESIEQDALGIRAAVIDNRTREVFPLILPMPGMHNLSNALAAIAAAS 304

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A GI+    +  L+    +  RF+ VGT++ G  +  D+ H        L+ ++  T GR
Sbjct: 305 ASGIEVRSAVYVLKDFAGLARRFDVVGTSASGITVIDDFGHNPEKCAATLRTLKA-TEGR 363

Query: 384 IIVVF---GCGGDRDQGKRPIMGKIALDLA--DIAIVTD------DNPRSEDPEKIRAEI 432
           +I  F   G G  +  G   +    A +L   DI I+ D         RSE  E+I A I
Sbjct: 364 VIAFFQPHGYGPLKQMGHE-LAETFAKELGADDITIMCDPVYFGGTVDRSEGTERIIAMI 422

Query: 433 -IHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
             HG     IP     G+RI      IE+ +  D +V+ G   +T+
Sbjct: 423 EEHGGTAEHIPEREACGDRI------IEIASPGDRIVIMGARDDTL 462


>gi|254303962|ref|ZP_04971320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324154|gb|EDK89404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 432

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 49/248 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 93  IIAITGTNGKSTTTAKISDMLNHAGYKAAYAGN--------------------IGRSLSE 132

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ +++   Y++ K    
Sbjct: 133 VLLKEKDLDFISLELSSFQLEN--VENFKPYISMIINMGPDHIERYKSFDEYYDTKFN-- 188

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQV 291
             ++  ++  + + ++    E+ KRA     + +SV    K   F+   K+C  H +  +
Sbjct: 189 --IVKNQTEDLYFIENIDDVEIEKRAKQIKAKRISVSKFKKADIFVKNDKIC--HGENTI 244

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---------ALVLEHLEKLHVV 342
                  D D L  L G   + N L        + ID          A  LEH  +L   
Sbjct: 245 I------DVDKL-SLKGIHNLENTLFMVATAEILKIDKEKLKEFLMIATPLEHRTELFFN 297

Query: 343 PGRFEFVG 350
            G+ +F+ 
Sbjct: 298 YGKLKFIN 305


>gi|269926732|ref|YP_003323355.1| domain of unknown function DUF1727 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790392|gb|ACZ42533.1| domain of unknown function DUF1727 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 462

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 110/299 (36%), Gaps = 77/299 (25%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-----SSFAQDNR 161
           SR+  +  + +  V+GT+GK++ +  + +   + G         S +     SS   ++R
Sbjct: 44  SRVSSRLEDGVFLVSGTNGKTTTSRIIAECFVKDGYKVLHNRSGSNLVRGIASSLVDNSR 103

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           ++      LA          V  V  EAS  G+    L  +   +   TNL RD +D + 
Sbjct: 104 ISGMPTAELA----------VFEVD-EASLPGV----LSCLTPRSILLTNLFRDQLDRYG 148

Query: 222 TQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-------- 271
                   + R  E +  LP E   I+ ADD     ++  A    CRV+  G        
Sbjct: 149 EID---TVRKRWVEVISKLPSEVTLIVNADD---PSLVSIARQVNCRVIYYGLNDNEVAM 202

Query: 272 --------------------YQGKFI-HLKKVCAIH---NKQQVTISVEGKDFDFL---- 303
                               Y   ++ H+   C ++   ++  +     G  F+ +    
Sbjct: 203 HDLPHAADAVFCPDCGGGLLYSSVYVSHMGNYCCLNCGFSRPALDYEARGIQFNGVRSVS 262

Query: 304 -------------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                         PLPG + VYNAL A  L +  G+++ LV + +       GRFE V
Sbjct: 263 FELHHSQSILHLDLPLPGLYNVYNALAACSLVMEAGVEAYLVEQTIRSFEAAFGRFERV 321


>gi|163786279|ref|ZP_02180727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
 gi|159878139|gb|EDP72195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
          Length = 251

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 15/149 (10%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + I  +  + ++ N VS+D+R +    I+ A+ G   DG+ F+ +A+  GA+  VV    
Sbjct: 1   MKIEALYKKFKESNSVSTDTRKLPKECIYFALKGENFDGNKFVAKAVENGAKYCVV---- 56

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
              D  A I  N   ++V++    L   A+         I+++TG++GK++    +  + 
Sbjct: 57  --DDEDAMINENC--ILVEDVLTTLQQLATYHRNSIGIPIISLTGSNGKTTTKELINSVL 112

Query: 138 QRS-------GLSSFQIGPTSTISSFAQD 159
             +       G  +  IG   T+ SF++D
Sbjct: 113 TTTFNVKATLGNLNNHIGVPLTLLSFSED 141


>gi|120555362|ref|YP_959713.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
 gi|189028998|sp|A1U3F7|MURC_MARAV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120325211|gb|ABM19526.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
          Length = 481

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 103/279 (36%), Gaps = 33/279 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S +  +   +GL  +F IG    ++S   + +L              
Sbjct: 122 IAVAGTHGKTTTTSLIASVLGEAGLDPTFVIG--GKLNSAGTNAQLG------------- 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  ++  EA     D   L    +I+   TN+  DH+D +             F  
Sbjct: 167 ----GSRYLVAEADES--DASFLHLTPVIS-VVTNIEADHMDTYGGDVEKLKQTFVDFLH 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTIS 294
            LP    A++  DD Y +E++ R   A   +++ G        +   + +   K +  + 
Sbjct: 220 NLPFYGVAVMCVDDDYVQEIIPRISRA---IITYGIDNPDADYRAENITSDGLKTRFLVR 276

Query: 295 VEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             G   D      +PG   V NAL    +    G+D   +   L     V  RF+  G  
Sbjct: 277 RPGGRPDLQVELKMPGRHNVLNALATIAVATDEGVDDQAICRGLAGFAGVGRRFQVYGEY 336

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            T      +  DY H    +E +++  R     R IV+ 
Sbjct: 337 RTPKAAATLVDDYGHHPTEVEAVIRAAREAWPQRRIVML 375


>gi|134096475|ref|YP_001101550.1| cyanophycin synthetase [Herminiimonas arsenicoxydans]
 gi|133740378|emb|CAL63429.1| putative Cyanophycin synthetase [Herminiimonas arsenicoxydans]
          Length = 856

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 123/324 (37%), Gaps = 59/324 (18%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA    G+ P  ++AV GT+GK++    +  I Q    +  ++G T+T   + ++ R+
Sbjct: 462 TMFAEGDDGRIP--VVAVAGTNGKTTTVRLIAHILQ---ANKHRVGMTTTDGVYIENQRI 516

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI--DY 219
            T        A + L    V     E +  G+ +  L   +      TN+G  DH+  ++
Sbjct: 517 DTGDCSGPRSARNVLMHPDVDAAVFETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNF 576

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDA--------------YSKE----VMKRAH 261
             T +     K  + + + P  +  +  AD                ++K+    V+    
Sbjct: 577 ISTVEDLAVVKRVIVQNVAPNGTAVLNAADPMVANMAASCPGSVTFFAKDGNHAVLATHR 636

Query: 262 NAGCRVLS------VGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             G RV+       V  +G F H   L  +   HN                  L G FQ+
Sbjct: 637 AKGHRVVFLDGTSIVASEGAFEHRIALADIAITHNG-----------------LIG-FQI 678

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            NA+ A G   ++ +   +VL  L          PGRF        G  +  DY H  ++
Sbjct: 679 ENAMAAIGAAWSLNLSWDIVLNGLRTFENSAATTPGRFNLF--THHGATVIADYGHNPDA 736

Query: 369 LEMILKNIRTITSGRIIVVFGCGG 392
           +E +   +  + + R +VV    G
Sbjct: 737 IEALTHAVEAMPAKRRMVVISGAG 760


>gi|29349052|ref|NP_812555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340959|gb|AAO78749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 432

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 155/365 (42%), Gaps = 38/365 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G +F+A+ G   +G+ F  +A+  G A A++  S Y+       I  +  
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYA-------IEGDQR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+  + L   A+    +    ++ +TGT+GK++    +  +  +S    + +G   
Sbjct: 69  YILVDDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  PS +   KA        +  + + A+  G  +   +  +   G  TN
Sbjct: 128 -------NNHIGVPSTLLRLKA-----EHDLAVIEMGANHPGEIKFLSEIAEPDCGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L  KE S   I+ D+AY   + +     G  ++  
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKEGSTVFIHHDNAYLMNIAE-----GLNLIPY 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           G +       ++    N   +T       +GK +     L GE+   NAL A  +    G
Sbjct: 231 GTEDDLYVNGRITG--NSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFG 288

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384
           ++ A + E L        R +   T+     + +D A+ +N   M+  L+N R +     
Sbjct: 289 VEDAKINEALAGYTPQNNRSQLKKTDDN--TLIID-AYNANPTSMMAALQNFRNMEVPHK 345

Query: 385 IVVFG 389
           +++ G
Sbjct: 346 MLILG 350


>gi|304383669|ref|ZP_07366128.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella marshii DSM
           16973]
 gi|304335193|gb|EFM01464.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella marshii DSM
           16973]
          Length = 458

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 142/368 (38%), Gaps = 57/368 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V GT GK++ ++    I  +S      +   + +   ++D               +Y+
Sbjct: 115 LCVAGTHGKTTTSTMCAHIMHQS-----HVDCNAFLGGISKDY------------GTNYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA  +    H L   +      T+   DH+D + T++AY  +  R +  L
Sbjct: 158 LSDDSDYVVIEADEYDRSFHWL---RPWMSVITSTDADHLDIYGTREAYLES-FRHYTTL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + +E  A+I          MK     G R+   G      H K +  I N +        
Sbjct: 214 I-REGGALIIKHGL----AMKPDVKEGVRIYEYGRDEGDFHAKNI-RIANGEIT------ 261

Query: 298 KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             FDF+ P          LP    + N + A  +    G  +  +   ++  H V  RF+
Sbjct: 262 --FDFVSPVENVENVEMGLPIPINIENGVAAMAMAQLNGCTADELRYGMKTYHGVERRFD 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFG---CGGDRDQGKRPIMG 403
           F    +    +  DYAH    +   +K++R +  G RI  +F        RD  +     
Sbjct: 320 F-KIKTDHCVLLSDYAHHPKEIYQSIKSMRELYEGRRITAIFQPHLYSRTRDFYQEFAE- 377

Query: 404 KIALDLADIAIVTDDNPRSEDP-EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQD 460
             AL L D  I+ D  P  E P E + +++I+    PG  ++  + E +   +      D
Sbjct: 378 --ALSLLDEVILCDIYPARELPIEGVTSQLIYDCLKPGVEKRMIKTEEVLNVVRE-KDFD 434

Query: 461 VLVVAGKG 468
           VL++ G G
Sbjct: 435 VLMILGAG 442


>gi|289577961|ref|YP_003476588.1| FolC bifunctional protein [Thermoanaerobacter italicus Ab9]
 gi|289527674|gb|ADD02026.1| FolC bifunctional protein [Thermoanaerobacter italicus Ab9]
          Length = 427

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 94/444 (21%), Positives = 163/444 (36%), Gaps = 125/444 (28%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L ++N R+ LS      Y  +P+    I+ V GT+GK S ++F+  I Q++G     +  
Sbjct: 20  LGLENIRRLLS------YMGNPQKSLKIIHVAGTNGKGSTSAFISNILQQAGYK-VALYT 72

Query: 150 TSTISSFAQDNRLT-------------------------------TPSPIYLAKALSYLS 178
           +  +  F +  R+                                T   +  A A  Y  
Sbjct: 73  SPYLEEFEERMRINGENISKEKLIYYVEYIKPIISKMVEEGYNHPTEFEVVTAIAFKYFY 132

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-- 236
            + V  V +E    G    R D    I  S  ++    IDY  T +         +E+  
Sbjct: 133 DEKVDFVVLEVGLGG----RFDATNAIDSSLVSVITT-IDYDHTDRLGHTLGEIAYEKAG 187

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           ++ ++   + +     + +V+  A    C V +               +  K  V I  +
Sbjct: 188 IIKQKGVVVSFYQQPEAMKVIIEA----CEVRNA-----------YLTVLEKSNVIIKEQ 232

Query: 297 GKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----- 342
             DF         D    L GE Q+YNA              AL +E +EKL +      
Sbjct: 233 NPDFQIFDYKKYKDLKITLLGEHQIYNA--------------ALAIESVEKLRMYGYEIT 278

Query: 343 -------------PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
                        PGR E +    +   + +D AH    + ++ ++++     ++I+V G
Sbjct: 279 EKDIKEGLYRAKWPGRLEVM---RKKPYLVIDGAHNPQGMTVLKESLKLFKYDKLILVIG 335

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-------PEKIRAEIIHGIPGFIEK 442
              D+D  K   M  I +  ADI I T   P SE         E+I  E +  I   IEK
Sbjct: 336 MLKDKDTQK---MLNIIVPEADIIITT--TPLSERAYKASELAERIEKEKVIAIEN-IEK 389

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
                A++ A+++  ++D+++  G
Sbjct: 390 -----AVKYALDIAKEEDMVLFCG 408


>gi|228474999|ref|ZP_04059727.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|314936655|ref|ZP_07844002.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
 gi|228270984|gb|EEK12372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|313655274|gb|EFS19019.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
          Length = 448

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 21/191 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   H+DYH++ + Y NAK R+++     +     Y    Y +  +    N   + L 
Sbjct: 186 TNIYSAHLDYHESLENYQNAKRRIYKNQTEDD-----YLICNYHQRHLIETENLKAKTLY 240

Query: 270 VGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              Q +   I++K    ++N      +V   + D L  LPGE  + N L A    I  G+
Sbjct: 241 FSTQQEVDGIYIKDNYIVYN------NVNLINIDDLV-LPGEHNLENILAAVLAAILAGV 293

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +++ L     +  R +++GTN R  + Y D +  +N+L         + S +  ++
Sbjct: 294 PIKAIVDSLTTFSGIEHRLQYIGTN-RTNKYYND-SKATNTLATQF----ALNSFKQPII 347

Query: 388 FGCGG-DRDQG 397
           + CGG DR  G
Sbjct: 348 WLCGGLDRGNG 358


>gi|126650750|ref|ZP_01722966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
 gi|126592415|gb|EAZ86433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
          Length = 497

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 6/179 (3%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  H++Y +T + Y  AK  + + + PK +  II A+D  +K++     N   R
Sbjct: 215 GIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGT-LIINAEDMNTKKLDISKFNG--R 271

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIA 324
           VL VG      H +     + ++ +   +    K +D   P  G+ QVYNAL A      
Sbjct: 272 VLKVGIHDS-CHFRASHIQYYQKGMNFKLHHIRKIYDIFVPGFGQHQVYNALAAIAAAYE 330

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           IG+   +    L+    +  + +     +    +   ++ T+ SLE  LK +  +  G+
Sbjct: 331 IGVPIPVAANQLQSFRQLKKQLQLFEGINHSMLLDDTWSITTTSLEAGLKVLNDLGEGK 389


>gi|312128117|ref|YP_003992991.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778136|gb|ADQ07622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 458

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 21/194 (10%)

Query: 186 SVEASSHG------LDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +VE SS        +   +L+ IK      G   N+  DH++ H T + Y  AKMR+FE 
Sbjct: 152 TVETSSENTIFVLEISSFQLETIKYFKPKVGCILNITPDHLNRHMTMENYIKAKMRIFEN 211

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            + +    ++  D+  +++++  A   G  ++    + +F   + V  + N   +  + E
Sbjct: 212 -IDEMGYTVLNYDNNVTRDLIGLAK--GNVIVFSKTKTQF---ENVVFVEN-DVIYFTFE 264

Query: 297 GKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           GK  + +      +PG+  + NAL A    +  GI+   + + L+    V  R EFV   
Sbjct: 265 GKTQEVMKKDEIFIPGQHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFVA-E 323

Query: 353 SRGGRIYVDYAHTS 366
             G + Y D   T+
Sbjct: 324 INGIKFYNDSKGTN 337


>gi|293571733|ref|ZP_06682752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
 gi|291608190|gb|EFF37493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
          Length = 453

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 22/191 (11%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   HIDYH T++ Y  AK  L + +  ++   + +       E+ + A     RVL
Sbjct: 188 ITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLNWNQS----ELQELAQRTKARVL 243

Query: 269 SVGYQGKFIHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              +  K +    V A    I+ K++  + +          +PG   V NAL A  +   
Sbjct: 244 P--FSTKEVLEDGVYADDHAIYYKKEKIMEISE------LGVPGTHNVENALAAITVAKL 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGR 383
            GI +  + + L   H VP R ++VG   +G + Y D   T+  + +M L    T     
Sbjct: 296 YGISNEAIRQTLHLFHGVPHRTQYVG-EIQGRKFYNDSKATNILATKMALSGFETAK--- 351

Query: 384 IIVVFGCGGDR 394
            +V+   G DR
Sbjct: 352 -VVLLAGGLDR 361


>gi|229047597|ref|ZP_04193187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
 gi|228723844|gb|EEL75199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
          Length = 450

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G ++L S   + +     K  A++ K +  I V          LPG
Sbjct: 227 A---DVMALSAYSKGQKILFSTTKENEDGACIKDNALYFKGEKVIEVSD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G  +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|319899156|ref|YP_004159249.1| UDP-N-acetylmuramate--alanine ligase [Bartonella clarridgeiae 73]
 gi|319403120|emb|CBI76678.1| UDP-N-acetylmuramate--alanine ligase [Bartonella clarridgeiae 73]
          Length = 456

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+D++    A   A  R F E +P    A++  D    + ++ R H+       
Sbjct: 162 TNIDVEHLDHYGNFNALREA-FRQFVENVPFYGFAVMCLDHPEVQTLVSRIHDRWVITYG 220

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R L++  +G+ ++   +       + T     +  + + P+ G+  V NA  A
Sbjct: 221 ANPQADVRFLNLSMEGQKMYFDILIRSQKTGEKT-----EINNLILPMSGKHNVSNATAA 275

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G+    + + L +   V  RF   G +  G  I+ DY H    ++ +L   R 
Sbjct: 276 IAIAYELGVSPEAIKKGLAEFGGVKRRFTKTG-DWNGVEIFDDYGHHPVEIKAVLHAARE 334

Query: 379 ITSGRIIVV 387
              GR+I V
Sbjct: 335 SAKGRVIAV 343


>gi|294085900|ref|YP_003552660.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665475|gb|ADE40576.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 473

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 135/362 (37%), Gaps = 82/362 (22%)

Query: 60  IPQAIAQGAE-----AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           IP  + Q AE     A+VV+S     D    + +    L + +  + L       +    
Sbjct: 54  IPVMVGQSAENLGDAALVVTSTAIKADNPEVVAARAGFLPIVHRAEMLGELMRLRWS--- 110

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYL 170
              +AV GT GK++  S V  +     L   QI PT      I+ +  + RL        
Sbjct: 111 ---VAVAGTHGKTTTTSLVATL-----LDGAQIDPTVINGGIITGWGSNARL-------- 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                    +G   V     S G        +K      TN+  +H+D+H + +A   A 
Sbjct: 155 --------GKGKWMVVEADESDG----SFAKLKPTVAVVTNIDPEHLDHHGSFEALETAF 202

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +  F   +P    A +  D    + +M  AH    R+++ G          + A  + + 
Sbjct: 203 LN-FVSSIPFYGFATLCIDHPAVQRMM--AHIKDRRIITYG----------MSANADVRA 249

Query: 291 VTISVEGKDFDF------------------LFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + VEG++  F                  LFP+ G+  V N L A  + + + ID+  +
Sbjct: 250 TNLRVEGRNMLFDVLLSDRLVGEMERIDNVLFPMLGDHNVQNCLAAIAVALEMNIDAKKI 309

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     V  RFE  G  S G  I  DY H    ++  L+      +GR++    CG 
Sbjct: 310 KDSLAAFGGVGRRFETKGV-SDGVTIIDDYGHHPVEIKAALQ------AGRMM----CGD 358

Query: 393 DR 394
           ++
Sbjct: 359 NK 360


>gi|311741525|ref|ZP_07715349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303695|gb|EFQ79774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 509

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 44/249 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV-----------------VSSAYS 78
           DSR +  G +F+A+ G + DGH +  +AI QGA A++                 V+   +
Sbjct: 34  DSRKVTKGGLFLALPGARVDGHDYAEKAIEQGAVAVLAARPVGVPAVVVKPQGRVTGDAA 93

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             D  A     +   VV            RL  +   +I+ VTG++GK+S    +  I +
Sbjct: 94  NADIYAHDEDGSAAAVVQALSDIAREVTRRLTAEQGLDIVGVTGSAGKTSTKDLLATIFR 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVEASSHG 193
             G +    G      SF  +N +  P             ++ +S++G+ H+        
Sbjct: 154 AEGDTVAPPG------SF--NNEVGLPYTALRCDEHTRFLVAEMSARGIGHI-------- 197

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADD 250
             +H         G   N+G  H+    +++    AK  L  E LP  +    A++ ADD
Sbjct: 198 --RHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELV-EALPSAAEGGVAVLNADD 254

Query: 251 AYSKEVMKR 259
            +   +  R
Sbjct: 255 PFVAGMAPR 263


>gi|294338819|emb|CAZ87153.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Thiomonas
           sp. 3As]
          Length = 469

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 124/316 (39%), Gaps = 56/316 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           Q A+A+VVS+A         +R++ P ++    R    +  + +  +    +  +A+ GT
Sbjct: 63  QDADALVVSTA---------VRADNPEVLAARARHIPVVPRAVMLAELMRLKRGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    ++S   + +L                 QG 
Sbjct: 114 HGKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGVNAKL----------------GQG- 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++ VEA     D   L+ + ++A   TN+  DH+D +    A        F   LP   
Sbjct: 155 EYIVVEADES--DASFLNLLPVMA-VVTNIDADHMDTYGHDPARLRHAFVDFIARLPFYG 211

Query: 243 PAIIYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            A++  DDA  + +M            A +A  R + V  +G  +H   V   +  Q   
Sbjct: 212 AAVLCVDDAAVRGIMPFVSKPITSYGFAEDAQVRAIDVRAEGAQMHFT-VLRRNGVQLPP 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           ++V          LPG   V NAL A  +   + +D A +   L     V  RF+  G  
Sbjct: 271 LAVT-------LNLPGRHNVQNALAAIAVATELNVDDAAIQRALAGFTGVGRRFQRYGEV 323

Query: 351 TNSRGGRIYV--DYAH 364
               GG   +  DY H
Sbjct: 324 AAHHGGHFTLIDDYGH 339


>gi|293400553|ref|ZP_06644698.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305579|gb|EFE46823.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 437

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 37/217 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH+DY++  + Y +A    FE    +    I+ + DD    + ++R H    + L
Sbjct: 172 TNIELDHVDYYKDMEDYRDA----FETFANQVKKGIVLFGDD----QEVRRLH-VKTKHL 222

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVA 318
             G Q        V A+H    V  + EG  FD L+          P  G+  ++N+L  
Sbjct: 223 YYGLQDD----NDVQAVH----VIQNEEGMSFDVLYKKAYFGSFKLPFVGKPLLWNSLGV 274

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIR 377
             L I  G+  A++ E L     V  RF       + G +Y+ DYAH   +++ +++  R
Sbjct: 275 IALGIMEGLQPAVLQEGLASFPGVKRRF---TIEEKNGNVYIDDYAHHPTAVKYMIEAAR 331

Query: 378 -TITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
                 +II +F    DR       M + A  LD AD
Sbjct: 332 IKYPDKKIIAIFKP--DRYSRIYYFMDRFAQELDQAD 366


>gi|326315571|ref|YP_004233243.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372407|gb|ADX44676.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 475

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 134/336 (39%), Gaps = 50/336 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+A+V S+A    +          I VV        L   RL     +  +A+ GT G
Sbjct: 63  EGADAVVTSTAVQADNPEVLAARERKIPVVPRALMLAELM--RL-----KRGIAIAGTHG 115

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +   +GL  +F IG    ++S   + +L                 QG  +
Sbjct: 116 KTTTTSLVTSVLAEAGLDPTFVIG--GRLNSAGANAKL----------------GQG-EY 156

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA     D   L+ + ++A   TN+  DH++ +        +    F   +P    A
Sbjct: 157 IVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFGRLKSAFVDFLHRMPFYGTA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-----IHNKQQVTISV 295
           I+  D+   +E++    +  C V S G+    Q + + ++         +  +  VT+  
Sbjct: 214 ILCTDNPAIREILP---DVTCPVTSYGFSEDAQVRAVDVRADAGRMRFRVQRRNGVTL-- 268

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354
              D D +  L GE  V NAL A  + + + I    +L  L +   V  RF+  G   ++
Sbjct: 269 --PDLDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYGELPAQ 326

Query: 355 GGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
           GG  +    DY H    +   L   R    GR +V+
Sbjct: 327 GGGTFTLIEDYGHHPVEMTATLAAARGAFPGRRLVL 362


>gi|295688570|ref|YP_003592263.1| UDP-N-acetylmuramate/alanine ligase [Caulobacter segnis ATCC 21756]
 gi|295430473|gb|ADG09645.1| UDP-N-acetylmuramate/alanine ligase [Caulobacter segnis ATCC 21756]
          Length = 472

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G   V NA  A  +   +G+D+  + + L     V  RF   G  + G R+  DY 
Sbjct: 284 MPMAGHHNVLNATAAVAVARELGVDAESIAKGLAGFGGVKRRFTTTGV-ANGIRVVDDYG 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R +T G++I V
Sbjct: 343 HHPVEIAAVLKAARAVTQGKVIAV 366


>gi|255527337|ref|ZP_05394215.1| FolC bifunctional protein [Clostridium carboxidivorans P7]
 gi|296184932|ref|ZP_06853343.1| bifunctional protein FolC [Clostridium carboxidivorans P7]
 gi|255508984|gb|EET85346.1| FolC bifunctional protein [Clostridium carboxidivorans P7]
 gi|296050714|gb|EFG90137.1| bifunctional protein FolC [Clostridium carboxidivorans P7]
          Length = 447

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 107/234 (45%), Gaps = 16/234 (6%)

Query: 243 PAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQG-KFIHLKKVCAIHNK--QQVTISVEGK 298
           P I+Y  +   +EV++      G  ++ V +   +++  +K+    NK  Q++ +     
Sbjct: 202 PVIMYPQEKSVEEVIEEVCKEKGSNLIKVPFNCVEYVESEKISNNSNKYVQKLIVRTSSN 261

Query: 299 DFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNS 353
            ++    L G+ Q+ N   A+ A    I  G    L  +L  L+ +  + GR E +    
Sbjct: 262 IYNIELSLLGKHQMVNCATAIFAIEEIIKKGFRIELNNILNALKNVKWI-GRLEVMKNKP 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               + +D AH  + +  + +NI    S R +I++ G   D++  K  ++  IA     I
Sbjct: 321 L---VVIDGAHNIDGITKLKENIEKYFSYRKMILILGILADKEVEK--MVSTIAPMAEKI 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             VT D+ R+E+  ++   I         K N  EA +TA+  L ++D+L+++G
Sbjct: 376 IAVTPDSYRAENAHELEKIIKKCNANCESKDNYEEAYKTALSYLGEEDILIISG 429


>gi|146342497|ref|YP_001207545.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. ORS278]
 gi|166222960|sp|A4YZK2|MURC_BRASO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146195303|emb|CAL79328.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Bradyrhizobium sp. ORS278]
          Length = 467

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 134/337 (39%), Gaps = 56/337 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GADVVVVSTA---------IKRDNPELMAARAQRIPVVRRAEMLAELMRLKSCVAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +    GL    I     I+++  + RL                  G   
Sbjct: 117 GKTTTTSMVAALLDAGGLDPTVIN-GGIINAYGTNARL-----------------GGGEW 158

Query: 185 VSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           + VEA     D+     +KL A     TN+  +H+D+ +T +A  +A  R F E +P   
Sbjct: 159 MVVEA-----DESDGTFLKLPADVAIVTNVDPEHLDHFKTFEAVQDA-FRAFVENVPFYG 212

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLK--------KVCAIHNKQQ 290
            A++  D    + ++ +  +   R+++ G       + + L         KV     K  
Sbjct: 213 FAVMCIDHPVVQALVGKIEDR--RIITYGVNPQADVRLVDLTPMGGGSSFKVVFRDRKSG 270

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T  +     D + P+PG     NA  A  +   +G+    + + +     V  RF   G
Sbjct: 271 ATHEIS----DIVLPMPGRHNASNATAAIAVARELGLSDEAIRKAIGGFGGVKRRFTRTG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               G  +  DY H    +  +LK  R  ++G+++ V
Sbjct: 327 -EWNGVTVIDDYGHHPVEIAAVLKAARESSNGKVVAV 362


>gi|307731071|ref|YP_003908295.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
 gi|307585606|gb|ADN59004.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
          Length = 467

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 116/312 (37%), Gaps = 47/312 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    R+   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL T   I              
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV------------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                 A +   D   L+   +I    TN+  DH+D +    A        F   LP   
Sbjct: 159 ------AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE-GKDF 300
            A++  DD   KE++         ++  G+     +    V A   K   T   E     
Sbjct: 212 IAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVEARDGKMHFTAMREDAAPL 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-------NS 353
           D    LPGE  V NAL A  +   + +  A +   L   + V  RF+  G         +
Sbjct: 269 DITLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVIADGQT 328

Query: 354 RGGRIYV-DYAH 364
           RG    V DY H
Sbjct: 329 RGAYTLVDDYGH 340


>gi|255325348|ref|ZP_05366454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
 gi|255297913|gb|EET77224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
          Length = 509

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 44/249 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV-----------------VSSAYS 78
           DSR +  G +F+A+ G + DGH +  +AI QGA A++                 V+   +
Sbjct: 34  DSRKVTKGGLFLALPGARVDGHDYAEKAIEQGAVAVLAARPVGVPAVVVKPQGRVTGDAA 93

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             D  A     +   VV            RL  +   +I+ VTG++GK+S    +  I +
Sbjct: 94  NADIYAHDEDGSAAAVVQALSDIAREVTRRLTAEQGLDIVGVTGSAGKTSTKDLLATIFR 153

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVEASSHG 193
             G +    G      SF  +N +  P             ++ +S++G+ H+        
Sbjct: 154 AEGDTVAPPG------SF--NNEVGLPYTALRCDEHTRFLVAEMSARGIGHI-------- 197

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADD 250
             +H         G   N+G  H+    +++    AK  L  E LP  +    A++ ADD
Sbjct: 198 --RHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELV-EALPSAAEGGVAVLNADD 254

Query: 251 AYSKEVMKR 259
            +   +  R
Sbjct: 255 PFVAGMAPR 263


>gi|254485599|ref|ZP_05098804.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
 gi|214042468|gb|EEB83106.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
          Length = 471

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 131/337 (38%), Gaps = 58/337 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-----LAV 120
           +GAE IV+SSA         I+   P L   +  +F  L   R      E +     +AV
Sbjct: 69  EGAEVIVISSA---------IKPGNPEL---DAARFAGLPIVRRAEMLAELMRLKSNIAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++  + V ++  + G+    +     I ++  + R+                 Q
Sbjct: 117 AGTHGKTTTTTMVAELLVKGGIDPTVVN-GGIIHAYGSNARM----------------GQ 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID----YHQTQQAYFNAKMRLFEE 236
           G   V VEA       +RL     I    TN+  +H++    +   +Q + +     F  
Sbjct: 160 GEWMV-VEADESDGTFNRLPATIAI---VTNIDPEHMEHWGNFDTLRQGFLD-----FVS 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---I 293
            +P    AI   D    + ++ +  +   RV++ G+  +     +   +H K  V    I
Sbjct: 211 NIPFYGLAICCIDHPEVQALVGKITDR--RVMTYGFNAQAD--VRAVNLHYKAGVAHFDI 266

Query: 294 SVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             + +D    D   P+PG+  V NAL A  +   +GI    +   L     V  RF  VG
Sbjct: 267 QFQSEDITIKDCSLPMPGDHNVSNALAAVAVSRHLGIKGEEIRAALAGFGGVNRRFTKVG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               G  I  DY H    +  +LK  R  T GR+I V
Sbjct: 327 -EVDGVSIIDDYGHHPVEITAVLKAARQATEGRVIAV 362


>gi|183602422|ref|ZP_02963788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683263|ref|YP_002469646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191224|ref|YP_002968618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196630|ref|YP_002970185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218341|gb|EDT88986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620913|gb|ACL29070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249616|gb|ACS46556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251184|gb|ACS48123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289177340|gb|ADC84586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794217|gb|ADG33752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 481

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 55/299 (18%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++ +  G ++  +G                     +  A
Sbjct: 105 PAPWIGITGTNGKTSTTEMTSEMLKACGYTAPAVG--------------------NIGNA 144

Query: 174 LSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           LS  +   V  V  VE SS  L  H    ++L   + TN+  DH+D+H     Y   K +
Sbjct: 145 LSAAALDPVNDVLCVELSSFQL--HFTYSLELDCAAITNIAADHLDWHGGMANYATDKSK 202

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY-------------QGKFI 277
           +F+         I Y A DA   E+ + A  A GC    +G+              G  +
Sbjct: 203 VFD----GAKRVIAYNAQDARVSELARTAQTAEGCE--HIGFTLGEPVSGQIGIKDGWIV 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY---NALVAAGLCIAIGIDSALVLE 334
            +  +C     +   ++    DF  L    G    +   +AL A  L + +G D A  L 
Sbjct: 257 DMSGLCGGQTGEAYALAPIA-DFTHLAEPDGTIYPHLLADALTALILVVGLGADVATALN 315

Query: 335 HLEKLHVVPG--RFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            L++    PG  R + V    +  G   +VD +  +N+      ++ +   G ++ + G
Sbjct: 316 ALKRF--APGGHRIQTVAELASPEGTIRFVDDSKATNA-HAARASLNSFAPGSVVWIAG 371


>gi|84495980|ref|ZP_00994834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
 gi|84382748|gb|EAP98629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
          Length = 502

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 28/165 (16%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L G  P   L VTGT+GK++    +  I + +G  +   G   T              PI
Sbjct: 135 LEGAAP--WLTVTGTNGKTTTVQMLTSILRAAGKRAISAGNVGT--------------PI 178

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
             A     +  +    ++VE SS  L  H  D I+  A    N+  DH+D+H + + Y  
Sbjct: 179 LEA----IMDPEPFDAIAVELSSFQL--HWSDSIRPQASVCLNVAPDHVDWHGSYEDYLA 232

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGY 272
           AK +++      +   I   DD  ++ +++ A    GCR  +VG+
Sbjct: 233 AKGKVYNN---TQVACIYNVDDPQTERLVEDAEVQEGCR--AVGF 272


>gi|300856627|ref|YP_003781611.1| folylpolyglutamate synthase [Clostridium ljungdahlii DSM 13528]
 gi|300436742|gb|ADK16509.1| folylpolyglutamate synthase [Clostridium ljungdahlii DSM 13528]
          Length = 448

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 30/193 (15%)

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIG--IDSALVLEHLEKLHVVP 343
           Q++ +  + +D+     L G  Q+ N   AL A       G  ID   +L+ L  +  + 
Sbjct: 252 QKIKVHTKKEDYHIKLSLLGRHQLTNCACALFAIEELSRYGFDIDKQTILKALSNVKWI- 310

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIM 402
           GR E +    R   + +D AH    + M+ KN+ T     ++I++ G   D++     +M
Sbjct: 311 GRLEVM---HRKPLVVIDGAHNREGISMLRKNLCTYFNYNKMILILGILADKEV---EVM 364

Query: 403 GKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRT-------AI 453
            K  + LA+  I VT +N R+E+ ++++        G IEK N + EA+ T       A+
Sbjct: 365 VKTIVPLAERVIAVTPNNTRAENSKELK--------GVIEKYNSKCEALDTYEEAYEKAL 416

Query: 454 EMLNKQDVLVVAG 466
              ++ D+L+++G
Sbjct: 417 SYCSEDDILLISG 429


>gi|167614199|gb|ABZ89703.1| UDP-N-acetylmuramate--L-alanine ligase [Buchnera aphidicola]
          Length = 478

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 57/282 (20%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +A++GT GK++  S +  IC RS L+   I  G   +I+S+A     T  S  Y      
Sbjct: 122 IAISGTHGKTTTTSMITDICIRSRLNPTCINGGLIKSINSYA-----TLGSSRYFI---- 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA         L+    I    TN+  DH+D++ + Q      ++  +
Sbjct: 173 -----------VEADESDASFLYLNPTIAIV---TNIESDHMDHYNSLQQLIETFLKFLK 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-----------A 284
           ++ P    AII  D+     +  +     C++++ G+  K   ++ +C            
Sbjct: 219 KI-PIHGIAIICIDNFPIPNIFSKIK---CQIITYGFN-KNADIRILCYRQHSFLGFFSL 273

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           I NK+ + +S++         +PG+    NA  A    ++ G+ +  +++ L+       
Sbjct: 274 IVNKK-IKLSIK-------LNIPGKHNALNAAAAVAFSLSQGLKTEDIIKTLKNFQGTAR 325

Query: 345 RFEFVG--------TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           RFE++G         N++   +  DY H    L   +K IRT
Sbjct: 326 RFEYLGYLSITKDNINNKNSILIDDYGHHPTELSETIKTIRT 367


>gi|163760789|ref|ZP_02167869.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
 gi|162282111|gb|EDQ32402.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
          Length = 474

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N ++   +VE KD     P+PG+  V NA+ A  +   +G+    + + L +   V  RF
Sbjct: 265 NSRKTGETVELKDLRL--PMPGKHNVSNAVAAIAVAFELGLTPDQISKGLGQFGGVKRRF 322

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              G+   G  I+ DY H    ++ +L   R    GR+I V
Sbjct: 323 THTGS-WNGVEIFDDYGHHPVEIKAVLSAARDACQGRVIAV 362


>gi|328675240|gb|AEB27915.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida
           3523]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 119/316 (37%), Gaps = 42/316 (13%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSS 128
           V  + Y +  +S+ I +N P+L    T     L  +       K     LAVTGT GK++
Sbjct: 57  VYVANYDIVVYSSAILNNHPLLSQARTLGIQCLQRAMFLAVLMKDFSYSLAVTGTHGKTT 116

Query: 129 VASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +S +  + CQ    SSF +G                     +    S +   G   + +
Sbjct: 117 TSSILATLLCQLDKHSSFVVGGV-------------------VKHVDSNIQVNGTDKLVI 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA         L     I    TN+  DH+    T +  +   +  F   + KES   IY
Sbjct: 158 EADESDASFLYLSPQVAIV---TNIDLDHM---ATYKNSYQNLLENFANFISKESVKSIY 211

Query: 248 --ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDF 302
             ADD   ++++ +       + S G+        ++   H   ++T   I  +G +  F
Sbjct: 212 LCADDQGCRDLLAKYTLTDKNITSYGFSND--ADVQIYDYHIADEITHFKIIYKGDELSF 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-- 360
              LPG + V NA      C+ +G     +   L K+  V  RF+       G ++ V  
Sbjct: 270 KLQLPGRYNVQNATACIITCLDLGFKYEDISNALIKVAGVARRFDIYTKIISGYQVTVID 329

Query: 361 DYAH----TSNSLEMI 372
           DY H     +NSL  +
Sbjct: 330 DYGHHPVEVANSLSAV 345


>gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 838

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 135/338 (39%), Gaps = 43/338 (12%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATI 86
           I+ + +DSR +      +F A+   + DG  +I    A+G    V+S  ++ L D     
Sbjct: 24  IDWLLTDSRSLNFPEETLFFALTTKRNDGARYITDLYARGVRNFVLSEESFRLMDNGQLT 83

Query: 87  RSNT----------PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             N             L+V N  K L   A +   +    ++ +TG++GK+ V  ++ Q+
Sbjct: 84  IDNAMQRDDAQSIVNYLIVPNPLKALQKLAEQHRNQFQIPVIGITGSNGKTVVKEWLHQL 143

Query: 137 CQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSH 192
                     + P   I  S  + ++++  P  ++     S L+    G+       S  
Sbjct: 144 ----------LSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGI-------SEP 186

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADD 250
           G  +   + IK   G  TN+G  H      Q+ +F+ + +  E+L L K    +IY  DD
Sbjct: 187 GEMRALQNIIKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKNCDVVIYNGDD 240

Query: 251 AY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            + S  V K   +A     S     + +++ KV    +   ++      D  F  P   +
Sbjct: 241 EFVSNCVAKSMLSAREIAWSRKDMERPLYISKVEKRDDCTVISYRYLDMDNTFTLPFIDD 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             + N+L     C+ + + +  + E + +L  +  R E
Sbjct: 301 ASIENSLNCLAACLYLMLPAEQITERMARLEPIAMRLE 338


>gi|126665245|ref|ZP_01736228.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
 gi|126630615|gb|EBA01230.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
          Length = 486

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 104/279 (37%), Gaps = 33/279 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S +  +   +GL  +F IG    ++S   + +L              
Sbjct: 122 IAVAGTHGKTTTTSLIASVFAEAGLDPTFVIG--GKLNSAGTNAKL-------------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  ++  EA     D   L    LI+   TN+  DH+D +             F  
Sbjct: 166 ---GGSRYLIAEADES--DASFLHLTPLIS-VVTNIEADHMDTYGGDVEKLKQTFVDFLH 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    A++  DD Y +E++ R       +++ G        +    + +  +    V+
Sbjct: 220 NLPFYGVAVMCIDDPYVREILPRISRT---IITYGIDNPEADYRAENIVSDGLRTRFLVK 276

Query: 297 ----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 D      +PG   V NAL    +    G+D A +   L     V  RF+  G  
Sbjct: 277 RPGPRADLQVELKMPGRHNVLNALAVIAVATDDGVDDASIGRGLAGFAGVGRRFQVYGDY 336

Query: 353 --SRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVF 388
             ++G    V DY H    +  +++  R    GR +V+ 
Sbjct: 337 PIAKGSITLVDDYGHHPTEVAAVIRAARDAWPGRRVVML 375


>gi|78042912|ref|YP_360890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|122063239|sp|Q3AAE4|MURD_CARHZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77995027|gb|ABB13926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 23/218 (10%)

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           VS+E SS  L+   +   K       NL  DH+D H+T + Y  AK R+F     +    
Sbjct: 158 VSLEVSSFQLET--IKSFKPKVAVLLNLTPDHLDRHKTLEGYLEAKARIFIN-QDRTDVT 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  DD   + + ++      RV          +G F+   K+      + + +  E  D
Sbjct: 215 VLNYDDPRIRSLGRKTPG---RVFYFSQKEELEEGVFVKKGKIVV----RSLGVEEEIID 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            + L PLPG   + NAL     C + G+    +   L     V  R E V   +  G +Y
Sbjct: 268 IENL-PLPGPHNLENALATVAACWSFGVSGKNIERGLRNFQGVAHRLEKVAEIN--GVLY 324

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           V+ +  +N        I+ + S    +V   GG R++G
Sbjct: 325 VNDSKGTNP----DSTIKALNSYERPIVLIAGG-RNKG 357


>gi|196045927|ref|ZP_03113156.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
 gi|196023367|gb|EDX62045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
          Length = 450

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
               +VM   A++ G +VL S   + +     K  A++ K +  + V+         LPG
Sbjct: 227 V---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|326391690|ref|ZP_08213215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992268|gb|EGD50735.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 454

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH++ H+T ++Y + K R+FE     E   + + DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLNRHKTFESYRDIKGRIFENQRGDEYTVLNF-DDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +    +     A      + ISV G      D + ++ +PGE  + NAL A+ +    
Sbjct: 240 SRKSSLEN----GAYVKDGSIYISVNGNAKKIIDIEEIY-IPGEHNLENALAASSVAYLS 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ + +  ++
Sbjct: 295 GISANVIASTLKSFKGVEHRIEFV-DEINGVKFYNDSKGTNP--DASIKAIQALKTPIVL 351

Query: 386 VVFGC--GGDRDQGKRPIMGKI 405
           +  G   G + D+  +   GK+
Sbjct: 352 IAGGYDKGSEFDEFVKAFNGKV 373


>gi|319791664|ref|YP_004153304.1| UDP-N-acetylmuramoylalanyL-D-glutamyL-2,
           6-diaminopimelate/D-alanyL-D-alanyl ligase [Variovorax
           paradoxus EPS]
 gi|315594127|gb|ADU35193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus EPS]
          Length = 479

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 128/321 (39%), Gaps = 28/321 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +D+R +  G +FVA+ G + D + F+ QA  +GA A +          +      
Sbjct: 31  IARVHTDTRTLADGDLFVALKGERFDANDFLAQAKEKGAIAAIAHHGLEAAGLAG----- 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG- 148
              L V ++   L    +    +    ++AVTG++GK++V   +  I     L +F+   
Sbjct: 86  ---LEVPDSLVALGALGAGWRAQFELPLIAVTGSNGKTTVTQMIAAI-----LVAFRADR 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGI-KLIA 206
             +T  +F  +N +  P  +   +A          H  +E   +H  +  RL  I +   
Sbjct: 138 ALATAGNF--NNEIGVPLTLLRLRARHQ-------HAVLELGMNHPGEIARLSAISRPTI 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC- 265
               N  R+H ++  T +A       +F  +LP +  A+    D ++      AH+ G  
Sbjct: 189 ALVNNAQREHQEFMATVEAVAIENAAVF-AVLPDDGTAVFPYGDTFTSLWTDMAHDGGSR 247

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           R ++ G  +G  I L+          V +     +FD    + G     NAL A    +A
Sbjct: 248 RCMTFGEDEGADISLESAEWKQGAWAVRVRTPLGNFDASLHIAGRHNAGNALAATACALA 307

Query: 325 IGIDSALVLEHLEKLHVVPGR 345
            G+    + E L     V GR
Sbjct: 308 AGVPIDRIAEGLSAFEPVKGR 328


>gi|312111768|ref|YP_003990084.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
 gi|311216869|gb|ADP75473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 60/293 (20%)

Query: 118 LAVTGTSGKSSVASFVQQIC---QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
           + +TG++GK++  + + ++    ++  L +  IG  +  ++  A+ N        +L   
Sbjct: 115 IGITGSNGKTTTTTLIYEMLREGEKRPLLAGNIGVAACEVAQKAEANN-------WLVTE 167

Query: 174 LSYLSSQGV----THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           LS     G+     H+SV                       N+   H+DYH T++AY  A
Sbjct: 168 LSSFQLAGIRDFRPHISV---------------------LLNIFDAHLDYHGTKEAYAQA 206

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQ---GKFIHLKKVCA 284
           K  +F+     E  A++ ADD     VM+ A N+  +  + S   +   G +I   K   
Sbjct: 207 KANIFKN-QTNEDYAVVNADDEL---VMRLAENSCAQKVIFSATKKLDSGAYI---KDGW 259

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           I+   +  I+V          LPG+  + N L A  +    G+D+  + + L     V  
Sbjct: 260 IYWNDEAVIAVSD------IVLPGKHNLENILAAVAVAKLTGVDNKAIAKVLTTFTGVKH 313

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           R +++ T    GR + + +  +N    IL   R +++     V    G  D+G
Sbjct: 314 RLQYIATID--GRKFFNDSKATN----ILATQRALSAFEKDSVILLAGGLDRG 360


>gi|121611477|ref|YP_999284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verminephrobacter
           eiseniae EF01-2]
 gi|121556117|gb|ABM60266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verminephrobacter
           eiseniae EF01-2]
          Length = 638

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 22/125 (17%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
             +LA+TGT+GK++V +   Q+ QR+G S   +  IGPT   +     +  T P+ +++ 
Sbjct: 229 PTVLAITGTNGKTTVTALTGQLLQRAGRSVALAGNIGPTLLDTLAGHIDAGTLPA-VWV- 286

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+  R  G +  A +  N+ +DH+D+H    AY  AK 
Sbjct: 287 ---------------LELSSFQLE--RSTGFEPTAAALLNISQDHLDWHGDMAAYAAAKA 329

Query: 232 RLFEE 236
           R+F +
Sbjct: 330 RIFGQ 334


>gi|307266535|ref|ZP_07548068.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918454|gb|EFN48695.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 454

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH++ H+T ++Y + K R+FE     E   + + DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLNRHKTFESYRDIKGRIFENQRGDEYTVLNF-DDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +    +     A      + ISV G      D + ++ +PGE  + NAL A+ +    
Sbjct: 240 SRKSSLEN----GAYVKDGSIYISVNGNAKKIIDIEEIY-IPGEHNLENALAASSVAYLS 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ + +  ++
Sbjct: 295 GISANVIANTLKTFKGVEHRIEFV-DEINGVKFYNDSKGTNP--DASIKAIQALKTPIVL 351

Query: 386 VVFGC--GGDRDQGKRPIMGKI 405
           +  G   G + D+  +   GK+
Sbjct: 352 IAGGYDKGSEFDEFVKAFNGKV 373


>gi|86134152|ref|ZP_01052734.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
 gi|85821015|gb|EAQ42162.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 10/108 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           V++D+R+I+   IF A+ G+  +G+ F  +A+  GA  AIV    Y  QD          
Sbjct: 16  VNTDTRNIRKNTIFFALKGDNFNGNSFAEEALKLGANYAIVDEEVYQTQD---------A 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           I++V N  + L   A+    +    I+ +TG++GK++    +  +  +
Sbjct: 67  IILVPNVLETLQQLANYHRKQLKATIIGLTGSNGKTTTKELIFAVLSK 114


>gi|299143662|ref|ZP_07036742.1| folylpolyglutamate synthase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518147|gb|EFI41886.1| folylpolyglutamate synthase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 421

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 156/426 (36%), Gaps = 93/426 (21%)

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL------------ 142
           +DN +K L    S    ++   I+ V GT+GK SV S++Q     S L            
Sbjct: 22  LDNVKKLLEELGSI---QNKIKIIHVAGTNGKGSVCSYIQNTLSGSNLKCGLFISPYIDD 78

Query: 143 --SSFQI-GPTSTISSFAQ--------------DNRLTTPSPIYLAKALSYLSSQGVTHV 185
              + QI G   +   F +              +    T   I++A A  Y     V   
Sbjct: 79  IRETIQINGEYISEDDFVKCMEIIYPIVLKLDSEGYYVTSFEIFVAVAFLYFYKNKVDTA 138

Query: 186 SVEASSHGLDQHRLDGIKL----IAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPK 240
            +E    G    R D   +    IA   T++  DHI+   +T +     K  + ++    
Sbjct: 139 VMEVGMGG----RFDATNIFDAPIATVITSISLDHINILGKTLKEIAWQKGGIIKD---- 190

Query: 241 ESPAIIYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             P  IY      +EVM       +  NA     S+          K      ++   + 
Sbjct: 191 NVPVFIYPQ---KEEVMAELIRIAKEKNAPVHTFSLDDVKDIFSTDKYNEFSFREHKNMR 247

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP----------- 343
                      L G+ QVYNA +A            + L++L+    +            
Sbjct: 248 TS---------LLGKHQVYNASLAI-----------MTLDYLKNFFPISDDNLRKSISSA 287

Query: 344 ---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
              GR E +  N       +D +H + S++ +++N++T +  R+I+ F   GD+D     
Sbjct: 288 KNIGRIEVIKENPT---FVLDGSHNAESIDALIENLKTFSYNRLILGFSVLGDKDIDY-- 342

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           I+  +    + + + T DNPR+ + E ++ E+           +R  A    + + N+ D
Sbjct: 343 ILKNLIPLASSVVLTTIDNPRAAELEFLKREVSKYSNEVYAFEDRKIAFDKTVSLANEDD 402

Query: 461 VLVVAG 466
           +++  G
Sbjct: 403 MILWCG 408


>gi|260655417|ref|ZP_05860905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629865|gb|EEX48059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 468

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 3/107 (2%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G  F A  G   DGHL+I  A+A+GA  ++       +   A     T  +  
Sbjct: 37  DSRAVEPGDGFAAFQGESTDGHLYIESALARGASVVLAERGRVSEKLPAQWPQVT-FIFG 95

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
             +   L+  A     + P+  ++ AVTG+ GK++  SF+ +I   S
Sbjct: 96  HRSETALAELARAYLVRLPDLKHVAAVTGSVGKTTTRSFLARIMSAS 142


>gi|255529994|ref|YP_003090366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
 gi|255342978|gb|ACU02304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
          Length = 433

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 27/231 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R+I  G +F A+ G K D + F  +A+  GA       AYS+ D  A  ++N   
Sbjct: 17  VCTDTRNIVPGCLFFALKGEKFDANTFAEEALKLGA-------AYSIIDNEA-YQTNERC 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +    L   A     +    ++ +TG++GK++    +  +  R             
Sbjct: 69  LLVSDVLTALQDLARHHRSQLHIPVVGLTGSNGKTTTKELINAVLSRK------------ 116

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209
             +FA    L      ++   LS LS      ++V    ++H  +   L GI +   G  
Sbjct: 117 YKTFATRGNLNN----HIGVPLSILSLGPEIEMAVIEMGANHQKEIEFLCGIAQPTHGLI 172

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           TN+G  H+D     +     K  LF  L      A I  ++ Y  E+ ++A
Sbjct: 173 TNIGMAHLDGFGGFEGVKKGKAELFAYLKQHSGFAFINRNNPYLLEMSEKA 223


>gi|220904382|ref|YP_002479694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|254766049|sp|B8IZT9|MURD_DESDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219868681|gb|ACL49016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 434

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 20/120 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E +LAVTGTSGK++ AS    +    G + F  G             + TP   Y+    
Sbjct: 119 EPVLAVTGTSGKTTTASLAAAMLHEQGYAVFLGG------------NIGTPLSEYV---- 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             LS      + +E SS  L        +  AG   N+  +H+DYH+    Y  AK RLF
Sbjct: 163 --LSGHKADVLVLEISSFQLQTCSTFCPR--AGILLNITPNHLDYHKDMAEYTEAKFRLF 218


>gi|327194621|gb|EGE61471.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli
           CNPAF512]
          Length = 471

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI S  + + L     V  RF   G    G +I+ D
Sbjct: 278 LVMPMPGRHNISNATAAIAVANRLGISSVDIAKGLASFGGVKRRFTLTG-EWNGVQIFDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GRII V
Sbjct: 337 YGHHPVEIKAVLRAAREACKGRIIAV 362


>gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
 gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
          Length = 466

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 149/379 (39%), Gaps = 66/379 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR   AG +FVA  G K DGH +          A    +  ++           P+
Sbjct: 30  VEFDSRKAGAGGLFVAFPGEKVDGHDY----------AAAAVAGGAVAVLGTREVPGVPM 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS-----SF- 145
           ++V +    +   A  +  + P   ++ +TG+SGK++    + Q+  R G +     SF 
Sbjct: 80  VLVGDALDAMGRLARAVVDRLPALTVIGLTGSSGKTTTKDLIAQLTVRLGPTVAPPGSFN 139

Query: 146 -QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            ++G   T     QD R      + L K      ++GV HV          ++  + +  
Sbjct: 140 NELGHPWTALQADQDTRF-----LVLEK-----GARGVGHV----------RYLCEVVPP 179

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+G  H+    + +    AK  L E  LP +  A++ ADD    +VM  A    
Sbjct: 180 RISVVLNVGVAHLGEFGSVENIALAKGELVES-LPADGLAVLNADDPLV-DVM--AARTA 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFP---------LPGEFQV 312
            RV+  G            A  + + V ++++G+    +  + P         L G  QV
Sbjct: 236 ARVVRYGE----------AAHADVRAVDVTLDGRGRAAYTLVTPEGSAAVRLGLTGRHQV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
            N+L AA +   +G+  A +   L +L +V  R   V     G  +  D Y     S  +
Sbjct: 286 SNSLAAAAVARELGMPLAELAAALGELGLVSTRRMDVFERPDGVTVIDDSYNANPASTAV 345

Query: 372 ILKNIRTIT-SGRIIVVFG 389
            L+ +  +  +GR + V G
Sbjct: 346 ALRALAGMRGAGRAVAVLG 364


>gi|134095975|ref|YP_001101050.1| D-alanine:D-alanine-adding enzyme [Herminiimonas arsenicoxydans]
          Length = 371

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 118/288 (40%), Gaps = 23/288 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALS 175
           ++ VTG++GK++V   +  I   +       GP + +++    +N +  P  +    A  
Sbjct: 18  LIGVTGSNGKTTVKEMIAAILDAA------FGPDNYLATRGNFNNDIGVPLTLLRLNAAC 71

Query: 176 YLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             +    G+ H    A    + Q  +       G   N  R+H ++ ++ +A       +
Sbjct: 72  KAAVIELGMNHPGEIAVLSAIAQPTV-------GLVNNAQREHQEFMESVEAVAQENGAV 124

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              L P +  A+  ADDA++   + R++ A  + L+ G+           A      +++
Sbjct: 125 LASL-PADGVAVFPADDAFTP--LWRSYAAQRKTLTFGFSADADVRCTYAANVFGNDMSV 181

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +   + F       G   V NAL A    +AIGI    ++  L+    V GR +     S
Sbjct: 182 TAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVSGRLQRKLAAS 241

Query: 354 RGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             G + +D  + +N  S+   +  +  + S RI+V+   G   + G++
Sbjct: 242 --GALVIDDTYNANPDSVRAAIDVLAQMASPRILVLGDMGEVGNDGRQ 287


>gi|114570627|ref|YP_757307.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
 gi|122315581|sp|Q0AMW8|MURC_MARMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114341089|gb|ABI66369.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
          Length = 468

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 19/190 (10%)

Query: 210 TNLGRDHIDYHQT----QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           TN+  +H++++ T    +QA+F      F E LP    A++  D    + +  R  +   
Sbjct: 184 TNIDPEHMEHYGTFDVLRQAFFQ-----FVENLPFYGFAVLCTDHPEVQSLASRVEDR-- 236

Query: 266 RVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVA 318
           RV++ G   +    +   K+        V   + G+D     D   P+ GE  V NA+ A
Sbjct: 237 RVITYGQNPQADARLENLKMDPSGATFDVRFRLRGQDETVWRDIFLPMMGEHNVLNAVAA 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 +G+  A     L +   V  RF   G   +G  I  DY H    +  +LK  R 
Sbjct: 297 LATARELGLTEAGAKTALGQFGGVKRRFTRTG-EWKGAAIIDDYGHHPVEIAAVLKAARQ 355

Query: 379 ITSGRIIVVF 388
             +G++I V 
Sbjct: 356 AATGKVIAVM 365


>gi|119475944|ref|ZP_01616296.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
 gi|119450571|gb|EAW31805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 28/275 (10%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPI 168
           Y  H + ++AV GT GK++  S    I + +GL   F +G     ++F    RL   +  
Sbjct: 87  YLLHDKWVIAVAGTHGKTTTTSMTAWILEYAGLKPGFLVG--GVPANFGYSARLGE-TDF 143

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           ++ +A  Y +S        +  S  L  H    I      F NL  DH D      A  N
Sbjct: 144 FVIEADEYDTSY------FDRRSKFLHYHPRTAI------FNNLEYDHADIFPDLAAIQN 191

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HN 287
            +  L    +P E   I  ++D    EV+ +    GC   ++ +           AI  +
Sbjct: 192 -QFHLLVRTIPGEGLIIHPSNDNNVAEVLLK----GCWSKTLSFGPDISSKLSGTAISED 246

Query: 288 KQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               ++S+ G D + +     + + G   + NAL A      +GI  A+  E L K   V
Sbjct: 247 HSHFSVSLNGPDQNKIVGEINWLMTGLHNMNNALAAIAAARHVGISPAIACEALSKFTGV 306

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             R E +   S    +Y D+AH   ++E  L+ +R
Sbjct: 307 KRRMEVI-YESAEMTVYDDFAHHPTAIETTLEGLR 340


>gi|320450516|ref|YP_004202612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
 gi|320150685|gb|ADW22063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
          Length = 428

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 146/371 (39%), Gaps = 62/371 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + + ++  DSR    G +FVA+ G +  G  ++ +A A+GA  ++     S +   AT+ 
Sbjct: 27  KPVRDLHWDSRETTPGSLFVALPGQRVHGREYVDEARAKGAHLVL-----SDRPGPATVE 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                 VVD  +  L L    L    P  ++AV G+SGK++    + Q     GL  F  
Sbjct: 82  ------VVDTHQALLRL-GRALRELFPGQVVAVGGSSGKTTTKEALAQ-----GL-GFPA 128

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--------GVTHVSVEASSHGLDQHRL 199
            P          N+ T P    LA+ L  L  Q        GV  V   A   GL +  L
Sbjct: 129 PP---------GNQNTAPP---LARFLLRLDPQAPGCVVELGVDRVGEMAELMGLARPHL 176

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     T LG +H++   + +     +  L        +P  + +  A   EV++R
Sbjct: 177 -------AVLTALGEEHLEAFGSLEGVVEEEAGLL------SAPQALVSLQA--AEVLER 221

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               G  + + G+       + +  + ++ +          +   P PG      AL A 
Sbjct: 222 -FGLGRGLPTYGFGEATFRGENLRLLLHESRFRYGA----LEVHIPYPGMGPALAALAAL 276

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRT 378
           G+   +G++   V E L  L + PGR E      + G ++++ A+ +N L +        
Sbjct: 277 GVAEMLGLNPKEVAERLAHLVLPPGRME---RREKDGVVFLNDAYNANPLSVKAGLAWLA 333

Query: 379 ITSGRIIVVFG 389
           +  GR  VV G
Sbjct: 334 LQPGRKWVVLG 344


>gi|313667811|ref|YP_004048095.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica ST-640]
 gi|313005273|emb|CBN86706.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica 020-06]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A GA A+VV
Sbjct: 8   FICQALKLPMPSENKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVV 67

Query: 74  S--SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           S     SL+D           L VD+T   L   A          +  +TG+ GK++V  
Sbjct: 68  SREDCASLKD----------ALKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKE 117

Query: 132 FVQQICQR 139
            +  + +R
Sbjct: 118 MLAAVLRR 125


>gi|306827070|ref|ZP_07460368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304430816|gb|EFM33827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 455

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR I  G +F+ + G + DGH FI  A   GA A           FS      
Sbjct: 26  LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            P L+V++  K     A     K   +++AVTG++GK+S    +  +   +
Sbjct: 75  KPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMISAVLSTT 125


>gi|239907965|ref|YP_002954706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
 gi|239797831|dbj|BAH76820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
          Length = 442

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 104/267 (38%), Gaps = 57/267 (21%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           PE I+AVTG++GK++    +  + + +G   F  G             + TP   ++   
Sbjct: 114 PEPIVAVTGSNGKTTTVMLISALLEAAGRRVFTGG------------NIGTPLSDHV--- 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              LS +    V +E SS  L   +    K+      N   +H+D+H     Y +AK+R+
Sbjct: 159 ---LSEEPADVVVLEVSSFQLQLTKTFRPKVAV--LLNFAANHLDWHADLDEYLDAKLRI 213

Query: 234 FEELLPKESPAIIYAD--DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           F    P ++ AI+  +  D  S     RA      V        F+   ++  +HN+  +
Sbjct: 214 FATQRPDDT-AIVSEELRDLLSGRPFTRAG-----VTWYAAASGFL-CPRLAGVHNQANM 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +                  Y A      C A G+D  L  +        P R + +G 
Sbjct: 267 EAA------------------YLA------CRAFGVDIKLARQVFADFVPAPHRIQIIG- 301

Query: 352 NSRGGRIYVD--YAHTSNSLEMILKNI 376
             +GG ++VD   A T  ++E  +++ 
Sbjct: 302 -EKGGVLFVDDSKATTVTAMEAAIRSF 327


>gi|229013097|ref|ZP_04170262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
 gi|229168653|ref|ZP_04296375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228614809|gb|EEK71912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228748351|gb|EEL98211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
          Length = 450

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 25/194 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  +II ADDA   +VM   A++ G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEADY-SIINADDA---DVMALSAYSKGQ 239

Query: 266 RVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +VL    +    G +I   K  A++ K +  + V     D +  LPG+  + N L A  +
Sbjct: 240 KVLFSTTKEIEDGAYI---KDNALYFKGEKVVKVS----DIV--LPGKHNLENILAAMSI 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              +G+ +  +   L+    V  R E+V T N+R  + Y D    S +  M+        
Sbjct: 291 AKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNR--KFYND----SKATNMLATEKALSA 344

Query: 381 SGRIIVVFGCGGDR 394
             + IV+   G DR
Sbjct: 345 FTQPIVLLAGGLDR 358


>gi|298527810|ref|ZP_07015214.1| cyanophycin synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511462|gb|EFI35364.1| cyanophycin synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 888

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 117/322 (36%), Gaps = 40/322 (12%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +S  ++G T+T   + Q+  L          A   L    V +   E +  G+ +  L  
Sbjct: 506 MSGKKVGYTTTDGIYIQNRLLYKGDCSGPDSARFVLRDPTVDYAVFETARGGMMRAGLGY 565

Query: 202 IKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                G  TN+  DH+  +   T +     K  + E + P    A++ ADD Y   V   
Sbjct: 566 DLSDVGVVTNVASDHLGLYGIHTLEQLTRLKCLVAENVQPS-GYAVLNADDDY---VYSM 621

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV----TISVEGKDFDFL------FPL--- 306
             N  C             +KK C+      V     I +   D+  L       PL   
Sbjct: 622 QENVSCNTAFFSMNAGNPRIKKHCSSGGTAAVYDEGDIILRKGDWSMLVDRVINIPLTYF 681

Query: 307 -PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-------VPGR---FEFVGTNSRG 355
               FQV N L A   C+A  +    V E    L         +PGR   FEF       
Sbjct: 682 GKAAFQVQNVLAA---CLAAFVQEVKVEEIRLGLQTFAPSSAQLPGRMNIFEF-----EK 733

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ +DYAH  +S+E + + + ++  G    +    GDR        G++A +  D  IV
Sbjct: 734 FKVLIDYAHNPSSMEAMGRFVSSLGMGVSTAILAGTGDRRDKDLQDYGRVAAEYFDRIIV 793

Query: 416 TDDN--PRSEDPEKIRAEIIHG 435
            +D    R  D  K+   I  G
Sbjct: 794 WEDQDYARGRDSMKVMQLIQEG 815


>gi|325142970|gb|EGC65327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis 961-5945]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L + A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|225575651|ref|ZP_03784261.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037108|gb|EEG47354.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
          Length = 459

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 133/347 (38%), Gaps = 49/347 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           + QA+ A+GA+      + ++QD      F+A I  + P       ++   L  + L G+
Sbjct: 46  LTQALEAKGAQIFYGQRSSNIQDSVDVVVFTAAIHPDNPEYSCAVKKRLPMLTRAELLGQ 105

Query: 113 HPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPS 166
              N    +AV GT GK++  S +  I   S        PT ++         N     S
Sbjct: 106 IMRNYDTPIAVAGTHGKTTTTSMISHILLES-----DCDPTISVGGILPVIGGNIRVGNS 160

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
             ++ +A  Y +S     +S               I LI     N+  DH+D+ +  +  
Sbjct: 161 ETFVTEACEYTNS----FLSF-----------FPKISLIL----NIDADHLDFFKDIED- 200

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                RLF E LP +   II +D     E+++   +  C +++ G      +  +    +
Sbjct: 201 IRHSFRLFAEKLPADGTLIINSDTDKYTEIIR---DLPCEIITYGLNSNADYTAQNIQYN 257

Query: 287 NKQQVTISV--EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                T     +G +   +   +PG   V NAL    L   +G++S  +   L+      
Sbjct: 258 EYGYATFDCVKDGVNLGTYSLSVPGIHNVSNALATLVLGFKLGLNSEALKTGLKHFQGTD 317

Query: 344 GRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVF 388
            RF++ G   + G + V  DYAH    ++  L   +      +  VF
Sbjct: 318 RRFQYKG---KVGEVTVIDDYAHHPTEIKATLTAAKNYPHKSLWCVF 361


>gi|254441834|ref|ZP_05055327.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
 gi|198251912|gb|EDY76227.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260
           TN+  +H+++  T +   +A    F   +P    A+   DD+           + V+   
Sbjct: 185 TNIDPEHMEHWGTIE-NLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLVGKITDRRVVTYG 243

Query: 261 HNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            NA    R +++ Y+    H   V      + +TI       D   P+PG+  V NAL A
Sbjct: 244 FNAQADVRAINLTYKKGVAHFDVVL---QNEDLTIK------DCALPMPGDHNVSNALSA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G+ +  +   L     V  RF  VG    G  I  DY H    +  +LK  R 
Sbjct: 295 IAVARYLGMKAEEIRAALAAFKGVGRRFTRVGEVG-GVTIIDDYGHHPTEISAVLKAARQ 353

Query: 379 ITSGRIIVV 387
            + GRI+ V
Sbjct: 354 ASDGRILAV 362


>gi|192292416|ref|YP_001993021.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286165|gb|ACF02546.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris TIE-1]
          Length = 469

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 22/157 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + + +G  + Q+G     +  +    L  P            
Sbjct: 117 VAITGTNGKSTTTALIAHLLREAGWDT-QLGGNIGTAILS----LEPP------------ 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  HV +E SS+ +D      +    G   N+  DHID H T + Y   K RL   +
Sbjct: 160 -KDGRVHV-IEMSSYQIDL--TPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
               + +II  DD + +    R   AG RV+ +  QG
Sbjct: 216 QDGGT-SIIGVDDEFGRAAADRIERAGKRVVRMSVQG 251


>gi|327404202|ref|YP_004345040.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
 gi|327319710|gb|AEA44202.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
          Length = 459

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 125/322 (38%), Gaps = 54/322 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL--SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           L V GT GK++ ++ +  +  +S L  S+F  G +S  +S    N L   S  Y      
Sbjct: 119 LGVAGTHGKTTTSTMLAYVLSQSHLKCSAFLGGISSNFNS----NVLVDASADYSV---- 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +EA        RL   K  A   T +  DH+D + T++ +       F+
Sbjct: 171 -----------IEADEFDRSFLRL---KPYASIITAMDPDHLDIYGTEELFQEG----FQ 212

Query: 236 ELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQ 290
           E   K S    +IY  +   K+   R  + G    S    G  +H    K +  I  + +
Sbjct: 213 EYANKHSDNQLLIYKYNLPLKQTGFRGISYGINTPSAQVNGSNLHYEDGKFILDIQFQDE 272

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  SV          LPG     NAL  A +C  +G+    +   L+    V  RFE+  
Sbjct: 273 LWESVS-------LGLPGIHNAENALAVAMMCRELGLSEEEIRSGLKNFKGVKRRFEYHL 325

Query: 351 TNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIV------VFGCGGDRDQGKRPIMG 403
              +   IY+ DYAH    +  ++ +IR +   + I+      +F    D + G    + 
Sbjct: 326 RTEK--LIYIDDYAHHPTEIAALVSSIRLLYPDKKIIGVFQPHLFSRTRDFEDGFVVELS 383

Query: 404 KIALDLADIAIVTDDNPRSEDP 425
           K+     D AI+    P  E+P
Sbjct: 384 KL-----DQAIIMPIYPAREEP 400


>gi|163738719|ref|ZP_02146133.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
 gi|161388047|gb|EDQ12402.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+ S+ + E L     V  RF  VG    G  I  DY 
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMKSSEIREALAAFGGVNRRFTKVG-EVDGVTIIDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R    GR+I V
Sbjct: 339 HHPVEITAVLKAARQACDGRVIAV 362


>gi|62185436|ref|YP_220221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           abortus S26/3]
 gi|81174946|sp|Q5L521|MURD_CHLAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62148503|emb|CAH64274.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila abortus S26/3]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 28/175 (16%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQ 138
           S  I+++ P +V    R    +   +L  + PE      L VTG++GK++   F+  + +
Sbjct: 66  SPGIKTSHPFVVEAKHRGIPIVTDIQLAFQDPEFHRYPSLGVTGSAGKTTTVLFLVHLLR 125

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G+S+  +G                  PI     L  +  +G+    VE SS  L +  
Sbjct: 126 SVGMSACAMGNIGF--------------PI-----LQAMYQKGIR--VVEISSFQLAEQE 164

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           ++   L A +  N+  +H+DYH T QAY  AK  + + L   +SP  ++  D  S
Sbjct: 165 IEIPVLSAAAILNISENHLDYHYTLQAYTEAKSHIAKCL---QSPESLWVGDGVS 216


>gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 434

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 10/106 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNT 90
           +VS+DSR I+ G IF A+ G+  +G+ +   A+ QGA  A+V   A + QD         
Sbjct: 15  KVSTDSRKIEPGCIFFALRGDNFNGNQYAQSALEQGASYAVVDDPALATQD--------- 65

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             +VVD+    L   A     +    I+A+TG++GK++    +  +
Sbjct: 66  RCIVVDDVLDTLQALAKFHRRQLHIPIIAITGSNGKTTTKELIAAV 111


>gi|331016730|gb|EGH96786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 456

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 154/389 (39%), Gaps = 40/389 (10%)

Query: 12  PELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           P   ++L++ P+  R    +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+G
Sbjct: 4   PMTFSELTV-PLDARLVGGDCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGK 126
           A   +V              +  P LVV +TRK L+ L A    G     + AVTG+SGK
Sbjct: 63  AVGALVEHEVE--------GAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V   +  I +  G      G          +N L  P  + L  A  Y S+     + 
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNL--------NNELGVPLTL-LELAPEYTSAV----IE 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + AS  G   + ++  K      TN G  H+      +    AK  + E +    +  + 
Sbjct: 162 LGASRVGEIAYTVNLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLN 221

Query: 247 YADDAYSKEVMKRAHN-----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             D A+     +  H      A     +  + G+     + C        T++       
Sbjct: 222 LEDKAFPIWRKRAGHRNILTFALADAAADFHAGELSRDARGC-----PSFTMASPLGSAQ 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   V NAL AA    A+G+    ++  L  +  V GR       S G R+  D
Sbjct: 277 VQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGR-AVAQIASNGVRVIDD 335

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFG 389
            Y     S+   + +I T  +GR ++V G
Sbjct: 336 TYNANPGSINAAV-DILTGFTGRTVLVLG 363


>gi|295399713|ref|ZP_06809694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978116|gb|EFG53713.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 60/293 (20%)

Query: 118 LAVTGTSGKSSVASFVQQIC---QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
           + +TG++GK++  + + ++    ++  L +  IG  +  ++  A+ N        +L   
Sbjct: 115 IGITGSNGKTTTTTLIYEMLREGEKRPLLAGNIGVAACEVAQKAEANN-------WLVTE 167

Query: 174 LSYLSSQGV----THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           LS     G+     H+SV                       N+   H+DYH T++AY  A
Sbjct: 168 LSSFQLAGIRDFRPHISV---------------------LLNIFDAHLDYHGTKEAYAQA 206

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQ---GKFIHLKKVCA 284
           K  +F+     E  A++ ADD     VM+ A N+  +  + S   +   G +I   K   
Sbjct: 207 KANIFKN-QTNEDYAVVNADDEL---VMRLAENSCAQKVIFSATKKLDSGAYI---KDGW 259

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           I+   +  I+V          LPG+  + N L A  +    G+D+  + + L     V  
Sbjct: 260 IYWNDEAVIAVSD------IVLPGKHNLENILAAVAVAKLTGVDNKAIAKVLTTFTGVKH 313

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           R +++ T    GR + + +  +N    IL   R +++     V    G  D+G
Sbjct: 314 RLQYIATID--GRKFFNDSKATN----ILATQRALSAFEKDSVILLAGGLDRG 360


>gi|71908878|ref|YP_286465.1| cyanophycin synthetase [Dechloromonas aromatica RCB]
 gi|71848499|gb|AAZ47995.1| Cyanophycin synthetase [Dechloromonas aromatica RCB]
          Length = 857

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 124/303 (40%), Gaps = 38/303 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+ GT+GK++ +  + +I + +GL   ++G TST   + +  R+ T        A + 
Sbjct: 472 VVAIAGTNGKTTTSRLIGRIFESNGL---RVGMTSTDGIYIEGKRIDTGDCSGPRSARNV 528

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI--DYHQTQQAYFNAKMRL 233
           L    V     E +  G+ +  L          TN+G  DH+  +Y  T       K  +
Sbjct: 529 LMHPDVDAAVFETARGGVLREGLGFDLCDVAVVTNIGLGDHLGLNYVTTVDELAVVKRVI 588

Query: 234 FEELLPKESPAIIYADDAY--------SKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCA 284
            E + P  + A++ A D            +V+  A +    VL+    QGK +       
Sbjct: 589 VENVSPHGT-AVLNATDPIVASMAIHCPGDVIFFARDRNHHVLATHRAQGKRV------- 640

Query: 285 IHNKQQVTISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++ ++   I  EG       PL            FQV NA+ AA    A+G D  ++   
Sbjct: 641 VYVERDAIIFGEGGRKKHRVPLANVPLTRNGSIGFQVENAMAAAATGWALGYDWPVIERA 700

Query: 336 LEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           L          PGRF     + +G  +  DY H  ++++ ++K +  + + R  VV    
Sbjct: 701 LANFVSDATTAPGRFNVF--DFKGATLIADYGHNPDAIQALVKAVENMPAVRRSVVISGA 758

Query: 392 GDR 394
           GDR
Sbjct: 759 GDR 761


>gi|37678796|ref|NP_933405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus YJ016]
 gi|60390522|sp|Q7MNV3|MURD_VIBVY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|37197537|dbj|BAC93376.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           YJ016]
          Length = 442

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 46/302 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      +    G+              A    +  P       AL  
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKC------------AIGGNIGVP-------ALDL 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q V    +E SS  L+      + L+A +F NL  DH+D +Q    Y  AK+R+F+ 
Sbjct: 151 LE-QEVELYVLELSSFQLE--TTTSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVT 292
                   ++  DD  +         +   +++ G      G   H  +    +N+Q + 
Sbjct: 208 ----AKHGVVNRDDRQTYPETSHGQQS-LALVTFGSDDKEFGVMSHQGESWLSYNQQPIL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            S E K       L G+  V N LV   L    GID    L  L+    +  R + V  N
Sbjct: 263 ASRELK-------LVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLTHRCQVVADN 315

Query: 353 SRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
            RG + +V+ +  +N  S +  L  +    +G++ ++ G  G        +PI+ ++ L 
Sbjct: 316 -RGIK-WVNDSKATNLASTQAALSGLN--CAGKLYLLVGGDGKGADFSPLKPILAQLNLQ 371

Query: 409 LA 410
           L 
Sbjct: 372 LC 373


>gi|218768816|ref|YP_002343328.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
 gi|121052824|emb|CAM09171.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L + A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|89067941|ref|ZP_01155385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046539|gb|EAR52595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 41/290 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GKS+ A+ +  + +  G  S   G                     + + + 
Sbjct: 121 KVVAVTGSNGKSTTAALIHHVLREGGRESQLAG--------------------NIGRGVL 160

Query: 176 YLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            +   G   V V E SS+  +  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 161 DIDPPGDGGVVVLELSSYQTELAR--SLTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            E  P     I+  D+   + +  +     A  RV+ +    K      V A   K  ++
Sbjct: 219 AEGGPDRC--IVGVDELEGRFLANQLAESRADDRVIRISADRKLAEGWSVTA--RKGYLS 274

Query: 293 ISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +G+     D   +  LPG     NA  A  +   +G+    +         +P R +
Sbjct: 275 ELRKGRQVGSIDLREIKGLPGAHNHQNACAAYAVARTLGLGPRQIEAAFASYPGLPHRSQ 334

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            +    RGG  +V+ +  +N ++   K +     GRI  +  CGG + +G
Sbjct: 335 LIA--ERGGVRFVNDSKATN-VDSAAKALAAF--GRIRWI--CGGLQKEG 377


>gi|322389010|ref|ZP_08062580.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
 gi|321144315|gb|EFX39723.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
          Length = 449

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 155/356 (43%), Gaps = 54/356 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQ---RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAK 172
           I+ +TG++GK++  + + ++     + GL S  IG P S ++  A +  +       L  
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFPASQVAQTATEKDV-------LVM 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            LS     G+     E             I +I    TNL   HIDYH + + Y  AK  
Sbjct: 167 ELSSFQLMGIEAFHPE-------------IAVI----TNLMPTHIDYHGSFENYVAAKWN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L + +  K+   + +  D  +KE+  +      RVL       F  ++KV   + +  + 
Sbjct: 210 LQKNMTEKDVIVLNFNQD-LAKELATKTK---ARVLP------FSTIEKVDGAYLEDGL- 258

Query: 293 ISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  +G+     D L  +PG   V NAL    +    G+++ ++ E L     V  R ++V
Sbjct: 259 LKFKGEAVMRADEL-GVPGSHNVENALATIAVAKVRGVENEVIKETLSAFGGVKHRLQYV 317

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +G + Y D    S ++    K +    + ++I++ G G DR      ++  IA  L
Sbjct: 318 -DEIQGVKFYND--SKSTNILATQKALSGFDNSKVILIAG-GLDRGNEFDELVPHIA-GL 372

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++ I+ +  PR +     RA    G+  +++  +  +A + A ++ +  DV++++
Sbjct: 373 KEMVILGESAPRVK-----RAADKAGV-SYVDATDVADAAKKAFDLASPGDVVLLS 422


>gi|268608183|ref|ZP_06141910.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ruminococcus
           flavefaciens FD-1]
          Length = 446

 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 37/145 (25%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG----P 149
           +   T+ F ++F         + I+ +TGT GKS+V S +  I   SG  +   G    P
Sbjct: 98  ITSETQVFFTVFR--------DQIIGITGTKGKSTVTSLIYHILHESGRDTRIAGNIGIP 149

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              I+    D+                      T V  E S H L+   +   K +   F
Sbjct: 150 VFDIAEGVNDD----------------------TIVVCELSCHQLEYMTVSPAKAV---F 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLF 234
            NL  +H+D++ T + Y+NAK  ++
Sbjct: 185 LNLYEEHLDHYGTMENYYNAKKNIY 209


>gi|241667549|ref|ZP_04755127.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876094|ref|ZP_05248804.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842115|gb|EET20529.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 102/257 (39%), Gaps = 38/257 (14%)

Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AVTGT GK++ +S +  + C+    SSF +G    +  +A  N                
Sbjct: 106 IAVTGTHGKTTTSSILATLLCKLDTTSSFVVG---GVVKYADSN---------------- 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   + +EA         L+    I    TN+  DH+    T +  ++  +  F  
Sbjct: 147 IQVNGTDRLVIEADESDASFLYLNPNVAIV---TNIDLDHM---STYKNSYDNLLENFAN 200

Query: 237 LLPKESPAIIY--ADDAYSKEVMK--RAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
            L KES   IY   DD    +++   R+   G  ++S G+       I+  +V    N  
Sbjct: 201 FLMKESIENIYLCVDDHGCNDLLDKYRSRVVG-NIVSYGFAINSDARIYNYRVS--DNLT 257

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             T+  +  ++DF   LPG++ V NA      C+ +G     +   L  +  V  RF+  
Sbjct: 258 TFTVEYKSGNYDFELQLPGKYNVQNATACVVACLDLGFRYEDIYNALVTVKGVARRFDVY 317

Query: 350 GTNSRGGRIYV--DYAH 364
                  +I V  DY H
Sbjct: 318 DKQISSHKIPVIDDYGH 334


>gi|225077134|ref|ZP_03720333.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
 gi|224951545|gb|EEG32754.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
          Length = 455

 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR IQ G +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSENKPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCAALKGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|163741570|ref|ZP_02148961.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
 gi|161385304|gb|EDQ09682.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+ S+ + E L     V  RF  VG    G  I  DY 
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMKSSEIREALAAFGGVNRRFTKVG-EVDGVTIIDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R    GR+I V
Sbjct: 339 HHPVEITAVLKAARQACDGRVIAV 362


>gi|296285056|ref|ZP_06863054.1| hypothetical protein CbatJ_15620 [Citromicrobium bathyomarinum
           JL354]
          Length = 476

 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 113/283 (39%), Gaps = 40/283 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E  +AV GTSGKS+V   +  I   +G +   I   + + +F  D+R    +   +  A 
Sbjct: 119 ETGVAVAGTSGKSTVTGMLGWILHHAGKNP-TIMNGAVMKNFVSDDRPFASA--VVGDAD 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y+S        V+ S   + Q+     K   G   N+  DH    + +Q        LF
Sbjct: 176 LYVSE-------VDESDGSIAQY-----KPAVGILLNVSLDHKSMDELRQ--------LF 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAH-------NAGCRVLSVGYQGKFIH--LKKVCAI 285
            + L     +++ ADD  +  ++  A+         GC  L +  +G       ++   +
Sbjct: 216 GDFLEASDRSVVNADDEEAFRLVAHANAPLTFGVTNGCAALGI-VEGSIAEGPTRQAAMV 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           H+K+      +         LPG   + NAL A     A G+  A  +  L +   +  R
Sbjct: 275 HDKR------DDSQHALTLNLPGRHNLSNALAAIAGANAAGVSVADAVAALAEFKGLARR 328

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           F+ VGT+S G  +  D+ H        L+ ++    GR++  F
Sbjct: 329 FDIVGTSSSGVTVIDDFGHNPEKAAATLRTLKA-HEGRVLAFF 370


>gi|317055027|ref|YP_004103494.1| UDP-N-acetylmuramate/alanine ligase [Ruminococcus albus 7]
 gi|315447296|gb|ADU20860.1| UDP-N-acetylmuramate/alanine ligase [Ruminococcus albus 7]
          Length = 477

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 147/375 (39%), Gaps = 77/375 (20%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTG 122
           +GAE I+         ++A I ++ P L+       +    + + G      EN L V G
Sbjct: 71  EGAELII---------YTAAIMADNPELIAAKESGAIVCERADILGVITGWYENALCVCG 121

Query: 123 TSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           T GK++ +S + QI   +G  +S    G   +I    +  +                 S+
Sbjct: 122 THGKTTTSSMLTQIFVDAGEDVSCVIGGKLPSIGGSGRAGK-----------------SK 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +   + E   H L  H    I L      N+  DH++Y +  +      ++ F      
Sbjct: 165 DMVCEACEYQDHFLKLHPDCAIIL------NVDADHLEYFKNIENI----IKSFHTFADM 214

Query: 241 ESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTI 293
            S A+IY  DDA +++ ++    +G  ++S G      Y  + I  K +       + T 
Sbjct: 215 ASSAVIYNGDDANTRKALEGI--SGKELISFGWNKANDYSAEIISKKGLVT-----RFTA 267

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G+   +    +PG   V NAL A       GI      + L   H    RF+ +   
Sbjct: 268 FFKGESLGEIEINVPGNHNVLNALAALAAARYSGISFEAAAKGLSSFHGAIRRFQLI-DK 326

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP--------IMGK 404
            RG  I  DYAH    +E+ L+  +++   R+  VF          +P        +M  
Sbjct: 327 VRGLTIVDDYAHHPKEIEVTLRAAKSLDFKRVWAVF----------QPFTYSRTEILMDD 376

Query: 405 I--ALDLADIAIVTD 417
              AL++ADI+++TD
Sbjct: 377 FARALEIADISVITD 391


>gi|238922862|ref|YP_002936375.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
 gi|259509771|sp|C4ZBV1|MURC_EUBR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238874534|gb|ACR74241.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
          Length = 459

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           FD    +PG   V NAL A  L   +G+D   +L  L+K      RF++ G    G  I 
Sbjct: 274 FDVKLSVPGAHNVSNALAAIALSTTLGLDEESILTGLDKFGGADRRFQYKG-KVNGVTII 332

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            DYAH    +   L   +     R+++ F
Sbjct: 333 DDYAHHPTEIRATLTAAQKYPHDRLVLCF 361


>gi|227833495|ref|YP_002835202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262184483|ref|ZP_06043904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227454511|gb|ACP33264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 511

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 42/251 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL------------- 79
           V  DSR + +G +FVA+ G + DGH +   AI +GA A++ +    +             
Sbjct: 31  VEFDSRKVTSGSLFVALPGARVDGHDYATTAIDKGAVAVLAARPVGVPAIVVEPHGRVEG 90

Query: 80  ----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                D  A     +   VV            RL  +    I+ VTG++GK+S    +  
Sbjct: 91  DGANADIYANDEDGSAAAVVAALSAIARAVTQRLAAEQNLTIVGVTGSAGKTSTKDLIAT 150

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEAS 190
           I +  G +   + P  +      +N +  P + +   +   YL    S++G+ H+     
Sbjct: 151 IFREVGET---VAPPGSF-----NNEIGLPYTALRCDEHTRYLVAEMSARGIGHI----- 197

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYA 248
                +H  +      G   N+G  H+    +++    AK  L E L   E+   A++ A
Sbjct: 198 -----RHLTEITAPRVGVVLNVGTAHLGEFGSRENIAQAKGELVEALPNAEAGGVAVLNA 252

Query: 249 DDAYSKEVMKR 259
           DD +   +  R
Sbjct: 253 DDPFVAAMAPR 263


>gi|85707767|ref|ZP_01038833.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
 gi|85689301|gb|EAQ29304.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
          Length = 478

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 97/446 (21%), Positives = 165/446 (36%), Gaps = 95/446 (21%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA  +V SSA   +  + +  + + TP++      +   + A  +  K   + +AV GT
Sbjct: 66  EGAAVVVTSSAVRRTNPEVAHALENRTPVV------RRAEMLAELMRLK---STVAVAGT 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSS 179
            GK++  S +  +     L   +I PT      I  +  + R+     +           
Sbjct: 117 HGKTTTTSMIASL-----LDCGEIDPTVINGGIIEQYGSNARMGDSDWMV---------- 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL- 238
                  VEA        RLDG   +    TN+  +H+D++      F+   + F E + 
Sbjct: 162 -------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHY----GDFDGVKKAFVEFIH 207

Query: 239 --PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             P    AI+  D    + V+    +   +V++ G+  +      +C ++    V  +  
Sbjct: 208 NVPFYGAAILCVDHPEVQAVIGDVRDR--KVVTYGFSLQ----ADICGVN----VRPTES 257

Query: 297 GKDFDFL---------------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           G  FD +                P+PG   V NAL A  + I +G     +         
Sbjct: 258 GNTFDVIVRQRGEEDRRIEGVHLPMPGRHNVQNALAAIAVAIEMGCSDETICNGFGSFSG 317

Query: 342 VPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGD 393
           V  RF  VGT    +    I  DYAH    +  +L   R  T      GR+I V      
Sbjct: 318 VRRRFTKVGTVPFPTGHATIIDDYAHHPVEIRAVLGAAREATEAAGVEGRVIAVMQP--H 375

Query: 394 RDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRI---- 446
           R      +M       + AD+  +T      EDP E + +E +  + G   +G+R     
Sbjct: 376 RYTRLNDLMDDFQNCFNEADMVFITPVYEAGEDPIEGVNSESL--VTGLKSRGHRSAQTT 433

Query: 447 ----EAIRTAIEMLNKQDVLVVAGKG 468
               +   T  E L + D++V  G G
Sbjct: 434 PDHDDLAATLAEELREGDMVVCLGAG 459


>gi|300722060|ref|YP_003711340.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628557|emb|CBJ89129.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
          Length = 491

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D +Q            F   LP    A++  DD   KE++ R    G  V +
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGRAVMCIDDPVVKELIPRI---GRYVTT 249

Query: 270 VGYQGKFIHLKKVCAIHNKQQ-----VTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCI 323
            G+  +      V   H +Q+      T+S +G  D   +   PG     NA  A  +  
Sbjct: 250 YGFSEE----ADVRITHYEQKGAQGFFTVSRQGFPDLHVVLNAPGCHNALNATAAVAVAT 305

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGT------NSRGGRIYV--DYAHTSNSLEMILKN 375
             GI+ + +L  L +      RF+F+G       N + G + +  DY H    ++  +K 
Sbjct: 306 EEGINDSAILASLAEFQGTGRRFDFLGDFSLKYINKKEGSVMLVDDYGHHPTEVDATIKA 365

Query: 376 IRT-ITSGRIIVVF 388
            R   T  RI+++F
Sbjct: 366 ARAGWTDKRIVMIF 379


>gi|255037241|ref|YP_003087862.1| UDP-N-acetylmuramate--L-alanine ligase [Dyadobacter fermentans DSM
           18053]
 gi|254949997|gb|ACT94697.1| UDP-N-acetylmuramate/alanine ligase [Dyadobacter fermentans DSM
           18053]
          Length = 468

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 24/143 (16%)

Query: 300 FDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           FD ++P          +PG   + N++ A+ + + IG+    + E LE    V  RFE+ 
Sbjct: 269 FDLVYPGGVIGGIAMKIPGYHNIENSIAASAVALYIGVQPTKIREALESYGGVKRRFEY- 327

Query: 350 GTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIV------VFGCGGDRDQGKRPIM 402
                 G +Y+ DYAH    +E  L +++ +  GR +       +F    D   G     
Sbjct: 328 -QLEEKGNVYIDDYAHHPTEIEAFLSSVKGLYPGRHVTAIFQPHLFTRTRDFADGFAE-- 384

Query: 403 GKIALDLADIAIVTDDNPRSEDP 425
              +L LAD  +V D  P  E P
Sbjct: 385 ---SLSLADRLLVLDIYPARELP 404


>gi|258516086|ref|YP_003192308.1| Mur ligase middle domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779791|gb|ACV63685.1| Mur ligase middle domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 455

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 22/187 (11%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G DH+    T   Y NAK  + E  L      I+ ADD     +  + +    R
Sbjct: 178 GIITNIGVDHLSGCSTFDNYLNAKAEMMEG-LGYRGTLILNADDKNISRIDLQPYKG--R 234

Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           ++  G   K      ++       Q ++  +   +D   P  G   +YNAL A      +
Sbjct: 235 IIYFGLSKKSHFRASEISLTDKGMQFSLEYKKLRYDIFVPGFGTHSIYNALAAIACTHVL 294

Query: 326 GI---DSALVL---EHLEK-LHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
           G+   ++AL L   +HLE+ L VVPG           G   +D   +SN  S++  LK +
Sbjct: 295 GLGIKEAALRLASYKHLERHLQVVPG---------VNGSTIIDDTWSSNPTSMQAALKTL 345

Query: 377 RTITSGR 383
           + ++  +
Sbjct: 346 QNLSGNK 352


>gi|229075669|ref|ZP_04208651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
 gi|229098383|ref|ZP_04229328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|229104475|ref|ZP_04235142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228678917|gb|EEL33127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228685000|gb|EEL38933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|228707445|gb|EEL59636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
          Length = 450

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRV 267
           F NL   H+DYH T++ Y  AK  +F+     +  ++I ADDA   +VM   A++ G ++
Sbjct: 186 FLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADDA---DVMALSAYSKGQKI 241

Query: 268 L-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L S   + +     K  A++ K +  + V          LPG+  + N L A  +   +G
Sbjct: 242 LFSTAKENEDGACIKDNALYFKGEKVVEVSD------IVLPGQHNLENILAAMSIAKLLG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           + +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 296 VSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|39936594|ref|NP_948870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris CGA009]
 gi|62900683|sp|Q6N409|MURD_RHOPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39650450|emb|CAE28973.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rhodopseudomonas
           palustris CGA009]
          Length = 469

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 22/157 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + + +G  + Q+G     +  +    L  P            
Sbjct: 117 VAITGTNGKSTTTALIAHLLREAGWDT-QLGGNIGTAILS----LEPP------------ 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  HV +E SS+ +D      +    G   N+  DHID H T + Y   K RL   +
Sbjct: 160 -KDGRVHV-IEMSSYQIDL--TPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
               + +II  DD + +    R   AG RV+ +  QG
Sbjct: 216 QDGGT-SIIGVDDEFGRAAADRIERAGKRVVRMSVQG 251


>gi|47565784|ref|ZP_00236823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228987057|ref|ZP_04147182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47557064|gb|EAL15393.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228772651|gb|EEM21092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 450

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 17/181 (9%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  ++V     D +  LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVAVG----DIV--LPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N L A  +   +G+ +  +   L++   V  R E+V T S   R + + +  +N 
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISN--RKFYNDSKATNM 335

Query: 369 L 369
           L
Sbjct: 336 L 336


>gi|327404522|ref|YP_004345360.1| FolC bifunctional protein [Fluviicola taffensis DSM 16823]
 gi|327320030|gb|AEA44522.1| FolC bifunctional protein [Fluviicola taffensis DSM 16823]
          Length = 415

 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VD AH +  + +++K+I+ +  GR+  ++G   D++     I+ ++  + A     T +N
Sbjct: 291 VDCAHNAEGIHVLMKSIQEVNKGRLHCIYGTSSDKNL--ETIIHELPAEAA-YYFTTFEN 347

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           PRS   E++  ++   I       + I+A++ A E +NK D +++ G
Sbjct: 348 PRSLSFEELTQKMTPRIKKATFFDSPIKALKKAQETVNKSDTILIFG 394


>gi|317401778|gb|EFV82394.1| cyanphycin synthetase [Achromobacter xylosoxidans C54]
          Length = 856

 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 156/407 (38%), Gaps = 74/407 (18%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +++A    G+ P  ++AV GT+GK++       I    G +  ++G T++   +  + R+
Sbjct: 460 NMYADGDDGRIP--VVAVAGTNGKTTTVRLTAHIL---GTAGNRVGMTNSDGVYVDNLRI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDY-- 219
            T        A S L    V     E +  G+ +  L   +      TN+G  DH+    
Sbjct: 515 DTGDCSGPRSARSVLMHPDVDAAVFETARGGILREGLAFDRCNVAIVTNIGMGDHLGLGY 574

Query: 220 ------------------HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                             H +  A  NA   +  E+      +I Y  +  +  VM    
Sbjct: 575 ISTVEDLAVVKRVIVQHVHPSGTAVLNAADPIVAEMASSCPGSITYFAEDRNHPVMATHR 634

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG---------EFQV 312
             G RV                 ++      ++ +G + +  FPL            FQV
Sbjct: 635 AQGLRV-----------------VYRDGDAIVAAQGGE-ETRFPLAEIPLTRNGTIVFQV 676

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            NA+ +     A+G+D ++V   L          PGRF     + RG  +  DY H  ++
Sbjct: 677 ENAMASIAAAWALGLDWSIVRRGLATFVNDAQTAPGRFNVF--DYRGATVIADYGHNPDA 734

Query: 369 LEMILKNIRTITSG-RIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDNPRSED 424
           +  +++ +  + +  R +V+ G G  RD+  R    I+G+ A D  D+ +  D   R   
Sbjct: 735 ILALVRAVDAMPAKRRSVVISGAGDRRDEDIRMQTEILGE-AFD--DVLLYQDQCQRGRA 791

Query: 425 PEKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVV 464
             ++ A +  G+     +   IE       AI TA+  LN  D+ ++
Sbjct: 792 DGEVLALLQQGLVN-ASRTRHIEEIHGEFLAIDTALARLNAGDLCLI 837


>gi|229157491|ref|ZP_04285568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
 gi|228625941|gb|EEK82691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
          Length = 450

 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 17/181 (9%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  ++V     D +  LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVAVG----DIV--LPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N L A  +   +G+ +  +   L++   V  R E+V T S   R + + +  +N 
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISN--RKFYNDSKATNM 335

Query: 369 L 369
           L
Sbjct: 336 L 336


>gi|167770370|ref|ZP_02442423.1| hypothetical protein ANACOL_01713 [Anaerotruncus colihominis DSM
           17241]
 gi|167667692|gb|EDS11822.1| hypothetical protein ANACOL_01713 [Anaerotruncus colihominis DSM
           17241]
          Length = 400

 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 139/377 (36%), Gaps = 86/377 (22%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTST------------ISSFAQDNRL 162
            I+ + GT+GK S A     I   +GL +   + P  T            I+  A    +
Sbjct: 16  RIVHIAGTNGKGSTAVMTAAILSAAGLRTGLTVSPFITDFCERIQIDGAPIAHEALAREM 75

Query: 163 TTPSP------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF- 209
           T  +P            +  A A SY +  G + V  E    G    R D   +I+    
Sbjct: 76  TRIAPLAEQVGGMTEFELITAAAYSYFADSGCSAVVAEVGLGG----RFDATNVISRPLV 131

Query: 210 ---TNLGRDHID-YHQTQQAYFNAKMRLFEELLP-----KESPAIIYADDAYSKEVMKRA 260
              T +G DH D    T       K  + +  +P     K+ P      DA +  +M+  
Sbjct: 132 SVITRIGLDHTDVLGSTPGEIAFEKCGIIKPGVPVVTCGKQDP------DALAV-IMEEC 184

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYN- 314
              GC ++S G  G              ++V   ++G DF +       PL G  Q+ N 
Sbjct: 185 AKRGCTLIS-GNPGAV------------REVQSGLDGTDFIYQGMRLHLPLIGNHQITNA 231

Query: 315 --ALVAAGLCIAIGI----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
             A+ AAG  +   +    D   + + L  +H VP RFE V  N     + +D AH   +
Sbjct: 232 VTAITAAGQALPALLGRLPDERTIAKALAGVH-VPARFEIVQRNP---LVIIDGAHNPQA 287

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS------ 422
              +   +  +    +  V G   D+D     ++  +A  LA +  VT ++PR+      
Sbjct: 288 AGALADALTLLGDQPVTGVIGVLADKDSTG--LLRALAPRLARVLCVTPESPRALGAHEL 345

Query: 423 ---EDPEKIRAEIIHGI 436
               D   +RA   H I
Sbjct: 346 AVRADAVGLRASAAHSI 362


>gi|186685868|ref|YP_001869064.1| cyanophycin synthetase [Nostoc punctiforme PCC 73102]
 gi|186468320|gb|ACC84121.1| cyanophycin synthetase [Nostoc punctiforme PCC 73102]
          Length = 901

 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR      N       VDYAH + S E +   +R  T+G+ I V G  GDR       +
Sbjct: 727 PGRMNLF--NLGNYHALVDYAHNAASYEAVGSFVRNWTTGQRIGVIGGPGDRRDEDFVTL 784

Query: 403 GKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           GK+A  + D  IV  DD+ R          II GI   ++  +R E+I    + +NK
Sbjct: 785 GKLAAQIFDYIIVKEDDDTRGRLRGSAAQLIIQGITQ-VKPDSRYESILDETQAINK 840


>gi|317474461|ref|ZP_07933735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
 gi|316909142|gb|EFV30822.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 170/397 (42%), Gaps = 45/397 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTP 91
           V++DSR+   G +F+A+ G+  +G+ F  +A+  G       SAY++ D +A + + +T 
Sbjct: 16  VTTDSRNCPKGSLFIALKGDNFNGNTFAAKALEAG-------SAYAIVDEAAYVPAGDTH 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN+ + L   A+    +    I+ +TGT+GK++    +  +  R     + I    
Sbjct: 69  YILVDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSR----KYNI---- 120

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFT 210
               + Q N     +PI +   L  L ++    +    +SH  D   L  I +   G  T
Sbjct: 121 ---LYTQGN---LNNPIGVPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L  K +S   I+ D+ Y  ++       G   +S
Sbjct: 175 NVGKGHLEGFGSFEGVIRTKGELYDYLRQKGDSTIFIHQDNPYLTKLA-----WGLNPIS 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            G Q        V    N   +        EG   +    L GE+ + NAL A  +    
Sbjct: 230 YGEQDGLYVNGHVTG--NSPYLIFEWKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFF 287

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGR 383
           G++   + + L +      R +   T      + +D A+ +N   M+  + N   + +G+
Sbjct: 288 GVEPEKIDQALNEYEPRNNRSQLKKTADN--TLIID-AYNANPTSMLASISNFHNMQAGQ 344

Query: 384 IIVVFG----CGGDRDQGKRPIMGKI-ALDLADIAIV 415
            +++ G     G D  +  + I+  +   D  D+A+V
Sbjct: 345 KMLILGDMRELGKDSPEEHQKIVDYLEKCDFKDVALV 381


>gi|325138950|gb|EGC61500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis ES14902]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|308235556|ref|ZP_07666293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14018]
 gi|311114356|ref|YP_003985577.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14019]
 gi|310945850|gb|ADP38554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14019]
          Length = 525

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 33/159 (20%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +P   + +TGT+GK+S      ++    G  +  +G                     + K
Sbjct: 115 NPAPWVGITGTNGKTSTTEMTSEMLTACGFDAPAVG--------------------NIGK 154

Query: 173 ALSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           ++S+ + +    V  VE SS  L  H  + ++L   + TN+  DH+D+H   +AY   K 
Sbjct: 155 SVSHAAMESEHDVLCVELSSFQL--HFTNSMRLDCAAITNIAADHLDWHGGIEAYAKDKS 212

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCR 266
           ++F  +      A++Y  +A    V + A NA    GC+
Sbjct: 213 KVFNGV----KKALVY--NAQDSRVSELAANAQVEDGCK 245


>gi|169827840|ref|YP_001697998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992328|gb|ACA39868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 464

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 7/190 (3%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  H++Y +T + Y  AK  + + + PK +  II A+D  +K++     N   R
Sbjct: 182 GIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGT-LIINAEDMNTKKLDISKFNG--R 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIA 324
           ++ VG      H +     + ++ +   +    K +D   P  G+ QVYNAL A      
Sbjct: 239 LVKVGIHDS-CHFRASHIQYYQKGMNFKLHHNRKTYDIFVPGFGQHQVYNALAAIAAAYE 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-R 383
           IG+   +    L+    +  + +     +    +   ++ T+ SLE  LK +  +  G +
Sbjct: 298 IGVPIPVAANQLQSFRQLKKQLQLFEGINHSMLLDDTWSITTTSLEAALKVLNELGDGKK 357

Query: 384 IIVVFGCGGD 393
            I V G   D
Sbjct: 358 KIAVIGTITD 367


>gi|325205486|gb|ADZ00939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M04-240196]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L + A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|322436309|ref|YP_004218521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
 gi|321164036|gb|ADW69741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
          Length = 456

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 145/365 (39%), Gaps = 32/365 (8%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S DSR I AG +F A+ G++ DGH ++  A+A GA A VVS+ +   D    +     + 
Sbjct: 28  SIDSRTIGAGELFFAVTGDRVDGHDYVEAALANGAVAAVVSNRWLASDEPREVDPCKLLW 87

Query: 94  VVDNTR---KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           V +      + + L A R+       ++ VTG++GK++    V  +      S F +   
Sbjct: 88  VPEGEECVLRAMQLLALRVRQSWGGRVIGVTGSAGKTTTKEMVATVLS----SQFSV--- 140

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAG 207
              S+   +N    P        L  L  +    V+V     +H  +  RL  I +   G
Sbjct: 141 -LKSAGNLNNHFGVP--------LQLLRLEAEHEVAVIEMGMNHSGEIKRLAEIAEPQWG 191

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR- 266
             +N+   H+++     A   A  R   E LP +  AI+  DD +      R    G   
Sbjct: 192 VVSNVAAVHLEFFPAGIAGIAAAKRELIEALPSDGLAILNGDDEWV-----RGFGVGVDS 246

Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +  +G + +      V A  +    T+   G   +    L G+  V NAL A  +    
Sbjct: 247 VLYGLGDEAQVRATNVVEAGLDGVSFTVHAGGDTAEVHLALLGKHNVSNALAAIAVGWKS 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
           G+        L ++     R   +    RG ++  D Y     +L+ ++  + +  + R 
Sbjct: 307 GMTLTACAAALAEMRATDKRGAVI--EWRGAKLLNDSYNSNPKALDAMVDALISTPATRR 364

Query: 385 IVVFG 389
           IVV G
Sbjct: 365 IVVAG 369


>gi|224541556|ref|ZP_03682095.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525523|gb|EEF94628.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
          Length = 446

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 100/258 (38%), Gaps = 25/258 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AVTGT+GK++  + + +I + +G  +   G                  P       
Sbjct: 108 QHYIAVTGTNGKTTTVTLIYEILKAAGRKAHICGNYGI--------------PYCEVVLN 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            +L  +    + VE S+  L    ++  K    +  NL  DH+DY  +   Y+ +KMR++
Sbjct: 154 EHLYEEEGHDIVVEMSNFQLID--IEEFKPEVATVLNLTPDHLDYMDSLDEYYASKMRIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                K+       D+     + K    +     SV  QG  + LK     +  Q+V   
Sbjct: 212 MNQDEKDLFINNSDDETLQSYLAKYPVPSRIETFSVKGQGD-VELKDNAIYYKGQKVIDR 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K       + G   V N +VA   C ++G+    + + L     V  R EFV     
Sbjct: 271 DEIK-------IVGLHNVANMMVAIAACASVGVSLDSIHDTLAAFKGVEHRIEFV-RELD 322

Query: 355 GGRIYVDYAHTSNSLEMI 372
           G R Y D   T+    +I
Sbjct: 323 GVRYYNDSKGTNTDAAVI 340


>gi|183179413|ref|ZP_02957624.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MZO-3]
 gi|183012824|gb|EDT88124.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MZO-3]
          Length = 421

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 20/182 (10%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL  +GL I+  +D    L H +    + GR + +   SR   I +D A
Sbjct: 254 LPLPNAATALMALGCSGLEIS-DLDVVEGLRHAQ----LAGRMQVI---SREPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  +S   +++ ++     ++I +V G   D+D      +    ++L    +VT   P S
Sbjct: 306 HNPHSAHYLVEQLKQRYPQQVIHLVLGMLHDKD------IASTVMELN--PVVTHWYPAS 357

Query: 423 -EDPEKIRAE-IIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
              P    AE +   +P G I+  N + A   A+  ++ QDV+VVAG  H    ++ + +
Sbjct: 358 LSGPRAATAEQLCQYLPAGNIQYANPVVAFEAALTQVSAQDVIVVAGSFHTVGEVLEHWQ 417

Query: 480 KK 481
           K+
Sbjct: 418 KR 419


>gi|55377104|ref|YP_134954.1| dihydropteroate synthase [Haloarcula marismortui ATCC 43049]
 gi|55229829|gb|AAV45248.1| dihydropteroate synthase [Haloarcula marismortui ATCC 43049]
          Length = 814

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 17/197 (8%)

Query: 293 ISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEFV 349
           +SV+G  +  D   PL G  Q  NA +AA LC  +   S   LE  L   H  PGRFE +
Sbjct: 237 VSVDGSGWRVDTYLPLLGAHQAQNAGIAATLCQQVADISQTDLERGLRNAH-WPGRFEVM 295

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +     + +D AH   S+E   + + +     + VV G   D+D        +IA  L
Sbjct: 296 NESP---LVVLDGAHNPGSIERTAETLSSFDYDNLHVVIGAMVDKDH------ERIAAAL 346

Query: 410 ADIAIVTDDNP---RSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVA 465
            D   V    P   R+E    + A + +     +E  + +  A+  A++  +  D ++V 
Sbjct: 347 PDPDHVVACQPNVDRAESHHVVAAAVENATDATVETRSDVAGALDIALDAADSGDAVLVV 406

Query: 466 GKGHETVHIVTNGEKKM 482
           G  +      TN  + +
Sbjct: 407 GSLYAVREARTNWSRSL 423


>gi|27364041|ref|NP_759569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus CMCP6]
 gi|30316015|sp|Q8DEK8|MURD_VIBVU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27360158|gb|AAO09096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           CMCP6]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 46/302 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      +    G+              A    +  P       AL  
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKC------------AIGGNIGVP-------ALDL 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q V    +E SS  L+      + L+A +F NL  DH+D +Q    Y  AK+R+F+ 
Sbjct: 151 LE-QEVELYVLELSSFQLE--TTSSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVT 292
                   ++  DD  +         +   +++ G      G   H  +    +N+Q + 
Sbjct: 208 ----AKHGVVNRDDRQTYPETSHGQQS-LALVTFGSDDKEFGVISHQGESWLSYNQQPIL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            S E K       L G+  V N LV   L    GID    L  L+    +  R + V  N
Sbjct: 263 ASRELK-------LVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLTHRCQVVADN 315

Query: 353 SRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
            RG + +V+ +  +N  S +  L  +    +G++ ++ G  G        +PI+ ++ L 
Sbjct: 316 -RGIK-WVNDSKATNLASTQAALSGLN--CAGKLYLLVGGDGKGADFSPLKPILAQLNLQ 371

Query: 409 LA 410
           L 
Sbjct: 372 LC 373


>gi|269967387|ref|ZP_06181447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           alginolyticus 40B]
 gi|269827975|gb|EEZ82249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           alginolyticus 40B]
          Length = 437

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 35/147 (23%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL    +G    I   A D  L   + +Y+      
Sbjct: 110 VIAITGSNGKSTVTDLTGVMAKAAGLD---VGVGGNIGVPALD-LLEQDADLYV------ 159

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-- 234
                     +E SS  L+   +  +KL A +F NL  DH+D +Q    Y  AK+R+F  
Sbjct: 160 ----------LELSSFQLE--TMSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFNH 207

Query: 235 ----------EELLPK-ESPAIIYADD 250
                     +E  P  E P + +  D
Sbjct: 208 AALAVVNRDDQETFPDAEMPLVTFGSD 234


>gi|225857286|ref|YP_002738797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
 gi|225725342|gb|ACO21194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
          Length = 457

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F     + ++ +   DSR I  G +FV + G   DGH FI  A   GA A+ +S 
Sbjct: 16  NDVSLFA----DAQLEKAEFDSRLIGTGDLFVPLKGAL-DGHDFIETAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       SN P ++VD+        AS    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|167856476|ref|ZP_02479193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
 gi|167852399|gb|EDS23696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 50/242 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V +   ++ +++G+   ++G    I                   ALS 
Sbjct: 108 IIAITGSNGKSTVTTLTTEMAKQAGV---KVGMGGNIG----------------VPALSL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L      +V +E SS  L+      +K  A +  N+  DH+D +++ + Y  AK++++  
Sbjct: 149 LKGDYELYV-LELSSFQLETTY--SLKAKAATILNISEDHMDRYESIEDYRQAKLKIYHH 205

Query: 237 ----LLPKESPAII--YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
               ++  E P      A  +  K   K A    C                   +++  +
Sbjct: 206 AENVIVNGEDPQTFPEQAVGSLKKFAEKDAEYTACN----------------GELYSGDE 249

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I+++         + G   V NAL +  L  A G+D + +++ L+    +  RF+ V 
Sbjct: 250 AVIAIDE------LKITGRHNVMNALASMSLAEATGVDRSGIVKALQSYSGLDHRFQLVP 303

Query: 351 TN 352
           TN
Sbjct: 304 TN 305


>gi|298252630|ref|ZP_06976424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
 gi|297532994|gb|EFH71878.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
          Length = 538

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 35/159 (22%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + VTGT+GK+S       +    GL++  +G                     + K+
Sbjct: 128 PAYWIGVTGTNGKTSTTEMTSAMLTACGLNAPAVG--------------------NIGKS 167

Query: 174 LSYLSSQGVTH--VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +S+ + +   H  + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K 
Sbjct: 168 VSHAALE-CEHDALCVELSSFQL--HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKS 224

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCR 266
           ++F  +      A++Y  +A  + V K A  A    GC+
Sbjct: 225 KVFNNV----QKALVY--NAQDERVSKLADCAQVADGCK 257


>gi|293365894|ref|ZP_06612597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307702297|ref|ZP_07639255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|291315572|gb|EFE56022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307624100|gb|EFO03079.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
          Length = 457

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 77/391 (19%), Positives = 147/391 (37%), Gaps = 68/391 (17%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F     + ++ +   DSR I  G +FV + G + DGH FI  A   GA   VV+ 
Sbjct: 16  NDVSLFA----DVQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA---VVT- 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S    +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 67  ------LSEKEVANHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +   +       G  + +IG   T+     D                 +   G  H+   
Sbjct: 121 LLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG-- 165

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFE-----ELLPKES 242
                 D H L  +     +   L G  H+ + + +      KM++ +      LL   +
Sbjct: 166 ------DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPA 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            +I+       K+V++    A   +  +              +  K  +T      +   
Sbjct: 220 DSIVEDYLPTDKKVVRFGPGAELEITDL--------------VERKNSLTFKANFLEQAL 265

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+ G++   NA++AA + +  G+    + +  + L +   R E+    + G  I  D 
Sbjct: 266 DLPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKA-ANGADILSDV 324

Query: 362 YAHTSNSLEMILKNIRTITS---GRIIVVFG 389
           Y     ++++IL+    I +   G+ I V  
Sbjct: 325 YNANPTAMKLILETFSAIPANEGGKKIAVLA 355


>gi|255098863|gb|ACU00771.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium massiliense]
          Length = 188

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 12/175 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+  + +AY +A    F E L  E   ++  DD  +  + +RAH  G RV  
Sbjct: 15  TNIEADHLDHFGSAEAY-SAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHERGIRVRG 73

Query: 270 VGY--QGKFIHLKKVCAIHNKQ--------QVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            G   Q +   +     + + Q        Q+ ++ E         +PG     NAL A 
Sbjct: 74  YGSADQAEAGDVPVAGQLRDWQFKDTGATAQIQLAGESAPRTMRLSVPGRHMALNALAAV 133

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
                IG     VL+ L     V  RFE VG+     R++ DYAH    +  +L+
Sbjct: 134 VAAAEIGAAVDDVLDGLAGFEGVRRRFELVGS-VESVRVFDDYAHHPTEVRTVLQ 187


>gi|254882385|ref|ZP_05255095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|319640562|ref|ZP_07995282.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
 gi|254835178|gb|EET15487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|317387839|gb|EFV68698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 149/360 (41%), Gaps = 26/360 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV      ++++A    +  
Sbjct: 15  KVTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDE----KEYAAD--GHPR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           IL+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G   
Sbjct: 69  ILLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L       +  + + A+  G  +     ++   G  TN
Sbjct: 128 -------NNHIGVPLTL-----LRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L+E L       I    D      + +     C  +  G
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGME-G 234

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +G +I   K+ A           EG+ F+    L G + + NAL A  +     + S  
Sbjct: 235 REGLYIS-GKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQ 293

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFG 389
           + E LE    VP       T +   ++ VD A+ +N   M+  L+N R +     +V+ G
Sbjct: 294 ICEALEA--YVPHNNRSQLTETTDNKLIVD-AYNANPTSMMAALENFRLMNVAHKMVILG 350


>gi|223984266|ref|ZP_03634411.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
 gi|223963751|gb|EEF68118.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
          Length = 438

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 32/206 (15%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL  DH+DY  +  AY++AKM +++     +   ++  DD    E++KR     CR ++ 
Sbjct: 178 NLTPDHLDYFGSLDAYYDAKMLVWKNQT-GDDWFLVNLDDP---EIVKRCAELPCRRVTF 233

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPL-----PGEFQVYNALVAAGLCIA 324
                      VC    + QV +      FD  LF L     PG   + NA+VAA + + 
Sbjct: 234 SLD----QPADVCV--KQDQVWL------FDQPLFALSDLHLPGRHNLQNAMVAAAMAVK 281

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGR 383
           +G+D+  + E +     V  R EFV    RG R Y D   T+ ++  + LK        +
Sbjct: 282 LGVDADQIREGIRAFKGVEHRIEFVA-EIRGARYYNDSKGTNVDATTVALKAFE-----K 335

Query: 384 IIVVFGCGGDRD---QGKRPIMGKIA 406
            +++   G D+     G +P++ ++A
Sbjct: 336 PVILLAGGYDKKTGFDGLKPVLDRVA 361


>gi|222097358|ref|YP_002531415.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Bacillus
           cereus Q1]
 gi|254766038|sp|B9IVY9|MURD_BACCQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221241416|gb|ACM14126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Q1]
 gi|324327812|gb|ADY23072.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V          LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVEVGD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|206976740|ref|ZP_03237644.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217961334|ref|YP_002339902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus AH187]
 gi|229140561|ref|ZP_04269116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
 gi|226711882|sp|B7HM33|MURD_BACC7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206745050|gb|EDZ56453.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217063256|gb|ACJ77506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH187]
 gi|228643122|gb|EEK99398.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V          LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVEVGD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGVSNKAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|99080520|ref|YP_612674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
 gi|118595693|sp|Q1GIV4|MURD_SILST RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|99036800|gb|ABF63412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
          Length = 467

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 23/134 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+  + +  I +        +G  S ++       L    P+        
Sbjct: 122 VIAVTGSNGKSTTVALLHHILE-------HVGRNSQMAGNIGRGVLDIDPPV-------- 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               GV  V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 167 --DGGV--VVLELSSYQTDLAR--ALTPDVAVFTNLTPDHLDRHAGMGGYFAAKRRLFAE 220

Query: 237 LLPKESPAIIYADD 250
             P    A+I  D+
Sbjct: 221 GGPDR--AVIGVDE 232


>gi|110637119|ref|YP_677326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110279800|gb|ABG57986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 426

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 12/109 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R ++ G +F A+ G   +G+ F   A+  GA  +VV  A  +QD       +  +
Sbjct: 16  VTTDTRKVKNGDLFFALKGPNFNGNTFAATALEMGAAYVVVDEAEVVQD-------DRYV 68

Query: 93  LVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           LV D   T + L+    R  G     ILA+TG++GK++    V  +  +
Sbjct: 69  LVDDVLTTLQQLANLHRRTLGIP---ILAITGSNGKTTTKELVNAVMSK 114


>gi|307709605|ref|ZP_07646058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
 gi|307619641|gb|EFN98764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
          Length = 457

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 77/385 (20%), Positives = 150/385 (38%), Gaps = 56/385 (14%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +SIF     + ++ +   DSR I    +FV + G + DGH FI +A   GA A+ +S 
Sbjct: 16  NDVSIF----EDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHDFIERAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------ANHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDML-- 118

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194
               + L S       T  ++  +N +  P  +           +G   + +E    H  
Sbjct: 119 ----ANLLSTTYKTYKTQGNY--NNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 165

Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYA 248
           D H L  +     +   L G  H+ + + +      KM++ +      LL   +  I+ A
Sbjct: 166 DIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAEGSLLLAPADPIVEA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                K+V++    A   +  +              +  K  +T      +     P+ G
Sbjct: 226 YLPADKKVVRFGQGAELEITDL--------------VERKDSLTFKTNFLEQALDLPVTG 271

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           ++   NA++A+ + +  G+    + +  + L +   R E+    + G  I  D Y     
Sbjct: 272 KYNATNAMIASYIALQEGVSEEQIRQAFQGLELTRNRTEWKKA-ANGADILSDVYNANPT 330

Query: 368 SLEMILKNIRTITS---GRIIVVFG 389
           ++++IL+    I +   G+ I V  
Sbjct: 331 AMKLILETFSAIPANEGGKKIAVLA 355


>gi|260493998|ref|ZP_05814129.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_33]
 gi|260198144|gb|EEW95660.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_33]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 150/370 (40%), Gaps = 77/370 (20%)

Query: 103 SLFASRL----------YGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           S+F+ RL          Y  +P+N   ++ +TGT+GK SV++ V++I   +G   +++G 
Sbjct: 18  SMFSIRLGLDNIKEICKYLGNPQNSYKVIHITGTNGKGSVSTTVEKILLEAG---YKVGK 74

Query: 150 TSTISSFAQDNRLT-----------------------------TPSPIYLAKALSYLSSQ 180
            ++      + R++                             T   +  A    Y    
Sbjct: 75  YTSPHILEFNERISFNDKYISNEDVAKYYEKVKKIIDEHNIQATFFEVTTAMMFDYFKDM 134

Query: 181 GVTHVSVEASSHGLDQHRLDGIKL---IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              +V +EA   G    R D   +   I    TN+  +H +Y      Y  AK +     
Sbjct: 135 KADYVILEAGMGG----RYDATNICDNIVSVITNVSLEHTEY-LGDTIYKIAKEK---AG 186

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISV 295
           + K  P  I+AD+  + +V K    A  + ++V   Y+    +L       N     I +
Sbjct: 187 IIKNCPYTIFADN--NPDVKKAIEEATDKYVNVLKKYKNSTYNLD-----FNTFSTNIFI 239

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G  +++   L G++Q  N L A  +   +GID  ++ E ++K+ V   RFE     S+ 
Sbjct: 240 NGNKYEY--SLFGDYQYKNFLCAYEVVKYLGIDENIIKEAVKKV-VWQCRFEVY---SKN 293

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  D AH    +E + K ++   +   + V+     D+D   R  M +   +++   I
Sbjct: 294 PLVIFDGAHNLAGVEELTKIVKQHFSKDEVTVLVSILKDKD---RVSMFRKLNEISSCII 350

Query: 415 VTD--DNPRS 422
           +T   DNPR+
Sbjct: 351 LTSIPDNPRA 360


>gi|289582210|ref|YP_003480676.1| dihydropteroate synthase [Natrialba magadii ATCC 43099]
 gi|289531763|gb|ADD06114.1| dihydropteroate synthase [Natrialba magadii ATCC 43099]
          Length = 840

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVV 342
           A H +  V+I  +        PLPG  Q  NA +AA L   I  + +  +   L   H  
Sbjct: 243 ANHTEAAVSIDADDWSVSTQIPLPGTHQAENAGIAAALARQIADVSTDELARGLRNAH-W 301

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           PGRFE + T      + +D AH   + E +   + T     + +VFG   D+D 
Sbjct: 302 PGRFEVLDTEP---LVVLDGAHNPGACEQLAATLGTYEFDDLHLVFGAMHDKDH 352


>gi|15676328|ref|NP_273464.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis MC58]
 gi|7225638|gb|AAF40854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Neisseria
           meningitidis MC58]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|227822650|ref|YP_002826622.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
 gi|254766017|sp|C3MEM8|MURC_RHISN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|227341651|gb|ACP25869.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
          Length = 469

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   V NA  A  +   +G++   + + L     V  RF   G    G  I+ DY 
Sbjct: 280 LPMPGRHNVSNATAAVAVAQRLGMEPEAIAKGLASFGGVKRRFTLTG-EWNGASIFDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    ++ +L+  R    GRI+ V
Sbjct: 339 HHPVEIKAVLRAAREACQGRIVAV 362


>gi|224826079|ref|ZP_03699182.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
 gi|224601716|gb|EEG07896.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
          Length = 463

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 135/349 (38%), Gaps = 68/349 (19%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAV 120
           A  QGA+ +V S+A         ++++ P +V    R    +  + +  +    +  +A+
Sbjct: 60  AYMQGADVVVTSTA---------VKADNPEVVEAKARHIPVIPRAMMLAELMRFKQGIAI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
            GT GK++  S    +   +GL  +F IG   T    A  N         +A+A    S 
Sbjct: 111 AGTHGKTTTTSLTASVLAAAGLDPTFVIGGKLTA---AGTNAKLGSGEFLVAEADE--SD 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-----YHQTQQAYFNAKMRLF 234
               H++                  +    TN+  DH+D     + + +QA+ +     F
Sbjct: 166 ASFLHLAP-----------------VMAVVTNIDADHMDTYEHSFDKLKQAFVD-----F 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCA 284
              LP    A++  DDA  +E++ R          + +A  +  +V   G  +H   V  
Sbjct: 204 LHRLPFYGRAVLCLDDANVREILPRVTKPVTTYGFSDDADVQAANVRAVGGQMHFDVVA- 262

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             N  Q+        F  +  LPG   V NAL A  + +  G D A + + L +   V  
Sbjct: 263 -RNGNQL-------HFPVVLNLPGRHNVLNALSAIAIGLECGADVASIQQGLAEFAGVGR 314

Query: 345 RFEFVGTNS--RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
           RF+  G  +   GG   +  DY H    +   L  +R    + R+++ F
Sbjct: 315 RFQRYGEVACPSGGHFTLVDDYGHHPVEMAATLAAVRGAFPAQRLVLAF 363


>gi|222099429|ref|YP_002533997.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga neapolitana DSM
           4359]
 gi|254766030|sp|B9K6P8|MURC_THENN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221571819|gb|ACM22631.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga neapolitana DSM
           4359]
          Length = 457

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 25/216 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN   DH++ +    + + A    FE +       I +A+D  +  +           ++
Sbjct: 176 TNARGDHLENYANSISRYRAA---FERISRNSDLVITFAEDELTSHLGN---------VT 223

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G +     L+   A  + Q+  I    K + +    +PG   + NAL    L  ++G D
Sbjct: 224 FGVRKGMYTLEMRSASRSGQRAIIEKNRKRYAELKLRIPGFHNILNALAVTALFDSLGYD 283

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTI-TSGRII 385
              VL+ LE+   V  RF  +  +     IYV  DYAHT   ++ +L+  + +  + +++
Sbjct: 284 LEEVLKALERFPGVRRRFS-ISYHDPENNIYVVDDYAHTPEEIKNLLQTAKEVFENEKVV 342

Query: 386 VVFG----CGGDRDQGKRPIMGKIALDLADIAIVTD 417
           V+F        +R+ G        AL LAD  IVT+
Sbjct: 343 VIFQPHRYSRLEREDGN----FARALQLADEVIVTE 374


>gi|282883226|ref|ZP_06291825.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus lacrimalis
           315-B]
 gi|281297038|gb|EFA89535.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus lacrimalis
           315-B]
          Length = 462

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 102/281 (36%), Gaps = 42/281 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKA 173
           +A++GT GK+S  S V +I     + +    PT  +     D     ++     ++L +A
Sbjct: 115 IAISGTHGKTSTTSMVAEI-----IKNLDTDPTIMLGGQLDDINGNIKIGKEKKLFLTEA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKM 231
             Y                     + + +KL   +    N+  DH+DY            
Sbjct: 170 CEY---------------------KANILKLFPTTAVILNIDEDHLDYFDNIDHIIRT-F 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHN 287
           + F E L K+   II  DD  +++++    NA     ++     Y  K I        + 
Sbjct: 208 KGFTEKLNKDDYCIINIDDENTRKLLP-IDNAKLITFAIDKKADYMAKNIDFDMYGRPYY 266

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                    GK       + G   +YN L A G C   GID    ++ +     V  R E
Sbjct: 267 DLYYKDKYIGK---VELAILGYHNIYNTLAAIGACHENGIDFEKCIKGIGDYKGVHRRLE 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           F G   +  R+  DYAH    ++  +  I+     R+  VF
Sbjct: 324 FKGL-YKNSRVMDDYAHHPTEIKSSISAIKKSCKKRLFTVF 363


>gi|269967384|ref|ZP_06181444.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
 gi|269827972|gb|EEZ82246.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
          Length = 485

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 111/293 (37%), Gaps = 62/293 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F  L +  ID+             
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHN---------- 223

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSV---GYQGKFIHL 279
                LP    AI+  DD   +E++ R          + +A  R+      G QGKF  +
Sbjct: 224 -----LPFYGQAIVCIDDPVVRELIPRISRQVITYGFSEDADVRIEDYRQEGQQGKFTVV 278

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +K  A              + D    +PG     NA  A  +     I+   +L+ +   
Sbjct: 279 RKGRA--------------NLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGT 324

Query: 340 HVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                RF+ +G    G     +  DY H    +++ +   R+     R++++F
Sbjct: 325 QGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIF 377


>gi|254671177|emb|CBA08291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha153]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR IQ G +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSENKSVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L + A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVDPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 ASVLRR 125


>gi|34499800|ref|NP_904015.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Chromobacterium violaceum ATCC 12472]
 gi|62900566|sp|Q7NPZ7|MURD_CHRVO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|34105650|gb|AAQ62004.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chromobacterium
           violaceum ATCC 12472]
          Length = 453

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 126/309 (40%), Gaps = 50/309 (16%)

Query: 67  GAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           GAE +VVS    L + + A  R     +V D     + + A  + G   + ++A+TG++G
Sbjct: 67  GAELLVVSPGVPLANPAIAAFRRAGGEVVGD-----IEILARAIQGDGSK-VIAITGSNG 120

Query: 126 KSSVASFVQQICQRSGLSSF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           KS+V S V  +C+ +GL +     IG     +  A++     P    L   LS    +  
Sbjct: 121 KSTVTSLVGHLCEAAGLDTVVAGNIGLAVLEALLAREQSGKRPDVWVL--ELSSFQLEST 178

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             ++ +A+                 +  N+  DH+D +     Y +AK R+F      + 
Sbjct: 179 FSLAADAA-----------------TVLNISEDHLDRYADLLDYAHAKTRVFN----GKG 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEG-KD 299
             ++  DDA  + +++  H             K+  L      A+       + V+G K 
Sbjct: 218 VQVLNKDDALVRAMVRPGHPV-----------KWFSLNGAADYALARNGGYWLKVDGEKV 266

Query: 300 FDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           FD     L G     NAL A GLC  IG+    +L+ L+    +  R E V  +   G  
Sbjct: 267 FDCADMQLQGLHNAANALAALGLCQGIGLPLEKLLDGLKTFRGLAHRVELV--DEFDGIA 324

Query: 359 YVDYAHTSN 367
           ++D +  +N
Sbjct: 325 FIDDSKGTN 333


>gi|229162848|ref|ZP_04290805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
 gi|228620730|gb|EEK77599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 25/194 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADDA   +VM  + N  G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADDA---DVMALSVNTKGQ 239

Query: 266 RVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +VL    +    G +I   K  A++ K +  + V     D +  LPG+  + N L A  +
Sbjct: 240 KVLFSTTKEIEDGAYI---KDNALYFKGEKVVEVS----DIV--LPGQHNLENILAAMSI 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              +G+ +  +   L++   V  R E+V T N+R  + Y D    S +  M+        
Sbjct: 291 AKLLGVSNEAITVVLKRFTGVKHRLEYVTTLNNR--KFYND----SKATNMLATEKALSA 344

Query: 381 SGRIIVVFGCGGDR 394
             + IV+   G DR
Sbjct: 345 FAQPIVLLAGGLDR 358


>gi|254441842|ref|ZP_05055335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
 gi|198251920|gb|EDY76235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
          Length = 465

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 25/136 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+ ++ +  I + +G    Q+G                     + + +  
Sbjct: 122 VIAVTGSNGKSTTSALIYHILEHAG-RPVQLGGN-------------------IGRGVLD 161

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L       V V E SS+ +D  R   +      FTNL  DH+D H     YF AK RLF 
Sbjct: 162 LDEAHDGEVIVLELSSYQIDLAR--ALTPDVAVFTNLTPDHLDRHAGHGGYFAAKRRLFA 219

Query: 236 ELLPKESPAIIYADDA 251
           E  P    A+I  D+A
Sbjct: 220 EGGPDR--AVIGVDEA 233


>gi|117922177|ref|YP_871369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. ANA-3]
 gi|117614509|gb|ABK49963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           ANA-3]
          Length = 439

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 112/268 (41%), Gaps = 43/268 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++   +G    I +    + 
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMLREAGMA-VAVGGNIGIPAL---DL 151

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           LT  + I++                +E SS  L+  H L+    +A +  N+  DH+D +
Sbjct: 152 LTENADIFV----------------LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               AY  AK+RL+      +S +II+  DDA +        N+       G +      
Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K     H   ++    E         L G     N L A  L  A+G++  ++ +     
Sbjct: 248 K---IYHGHSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVEKQVMAKVARTF 297

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +  R E VG   + G  YV+ +  +N
Sbjct: 298 TGLSHRCEVVGV--KAGVTYVNDSKATN 323


>gi|86749115|ref|YP_485611.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris HaA2]
 gi|118595683|sp|Q2IYL0|MURD_RHOP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86572143|gb|ABD06700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris HaA2]
          Length = 466

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 22/153 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + +++G  +   G   T     +  R                
Sbjct: 117 VAITGTNGKSTTTALIAHLMRQAGYDTQMGGNIGTAILSLEPPR---------------- 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  HV +E SS+ +D      +    G   N+  DHID H T + Y   K RL   +
Sbjct: 161 --AGRVHV-IEMSSYQIDL--TPSLDPSVGILLNVTEDHIDRHGTIEHYAAVKERLVAGV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
               + AII  DD + ++   R   AG RV+ +
Sbjct: 216 QDGGT-AIIGVDDGFGRDAADRLERAGKRVVRI 247


>gi|307564720|ref|ZP_07627250.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
 gi|307346648|gb|EFN91955.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
          Length = 459

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 129/332 (38%), Gaps = 54/332 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ +S    I  +S      +G T+ +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSSMCAHIMHQSS-----VGCTAFLGGISKN------------YGTNYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA       H L     +    T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSNKSDYVVIEADEFDRSFHWLRPWMTV---ITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II+ D       MK     G RV     +    H   V     K    I    
Sbjct: 214 IKAGGALIIHKDLE-----MKPNVQEGVRVYEYSREEGDFHADNVRI---KDGTII---- 261

Query: 298 KDFDFLFPL----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             FDF+ P+          P    + N++ A  +    G+    + E ++    V  RF+
Sbjct: 262 --FDFISPIEPIKDVELGQPIPINIENSIAAMAMAQLNGVIPNEIREGIKTYSGVDRRFD 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFG---CGGDRDQGKRPIMG 403
           F   N++   +  DYAH    +    K+++ + S R I V+F        RD  K     
Sbjct: 320 FKVKNAK-HVVLSDYAHHPKEILQSAKSLKELYSNRKITVIFQPHLYTRTRDFYKE---F 375

Query: 404 KIALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
             +L   D  I+T+  P  E+P E + +++I+
Sbjct: 376 AYSLSFFDEVILTEIYPAREEPIEGVTSKLIY 407


>gi|254419677|ref|ZP_05033401.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
 gi|196185854|gb|EDX80830.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
          Length = 470

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G   V NAL A  +   + +    + E L     V  RF   G  + G RI  DY 
Sbjct: 283 LPMAGWHNVSNALAAIAVARELDVSDEAIREGLAGFGGVKRRFTTTGVVN-GVRIVDDYG 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPR 421
           H    +  +LK  R +T GR+I V      R    R +M +   A   AD  IV D  P 
Sbjct: 342 HHPVEIVAVLKAARQVTEGRVIAVVQP--HRYTRLRDLMNEFSTAFSDADSVIVADVYPA 399

Query: 422 SEDP 425
            E P
Sbjct: 400 GEPP 403


>gi|58425181|gb|AAW74218.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 134/346 (38%), Gaps = 55/346 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           + P  I+  A  +VV +A S        R N  +  V+D  R++ S    L    L G+ 
Sbjct: 57  YAPSNISPDATDVVVGNALS--------RGNPAVEAVLDAGRRYTSGAQWLAEQVLPGR- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             + LAV GT GK++  + +  + + +G +  F IG     + F    RL          
Sbjct: 108 --DTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIG--GVAADFGVSARL---------- 153

Query: 173 ALSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                  QG   V VEA  +       + +    + +     NL  DH D          
Sbjct: 154 ------GQGREFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPD----VA 202

Query: 229 AKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVC 283
           A  R F  L+   P     I+  +DA+  EV+      GC   V   G+        ++ 
Sbjct: 203 AIQRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTSVEQFGFDASLDWSARLI 258

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           A        +    +     +PL G   V N L A     A+G+D A V+  L     V 
Sbjct: 259 AADGSAFAVLHRGAEVGHVQWPLLGRHNVLNGLAALAAVHAVGVDPATVMPALAHFQSVK 318

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            R E +G+ +RG  +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 319 RRLEVIGS-ARGITVYDDFAHHPTAIATTLQGLRARVGAARVVVAM 363


>gi|325971603|ref|YP_004247794.1| FolC bifunctional protein [Spirochaeta sp. Buddy]
 gi|324026841|gb|ADY13600.1| FolC bifunctional protein [Spirochaeta sp. Buddy]
          Length = 454

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 8/114 (7%)

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G +   L  + G  Q  N+ +A  +   +G+ +  V+  +EK + +PGRF+ + T+   
Sbjct: 259 DGTEEHLLLSMRGSVQAQNSALALLVLRTLGLYNEKVIPAIEK-NQIPGRFQQLSTSPC- 316

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +YVD AHT++SL+ +L +  ++   G   +++G   D+D      M  + LD
Sbjct: 317 --LYVDGAHTTHSLKALLSSFSSLHHEGTNTIIYGALEDKDHHH---MANLVLD 365


>gi|296160540|ref|ZP_06843356.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
 gi|295889289|gb|EFG69091.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
          Length = 467

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 110/290 (37%), Gaps = 39/290 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    R+   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL T   I              
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV------------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                 A +   D   L+   +I    TN+  DH+D +    A        F   LP   
Sbjct: 159 ------AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE-GKDF 300
            A++  DD   KE++         ++  G+     +    V A   K   T   E     
Sbjct: 212 IAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPL 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G
Sbjct: 269 DIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYG 318


>gi|217979592|ref|YP_002363739.1| UDP-N-acetylmuramate--L-alanine ligase [Methylocella silvestris
           BL2]
 gi|254766012|sp|B8ETM5|MURC_METSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217504968|gb|ACK52377.1| UDP-N-acetylmuramate/alanine ligase [Methylocella silvestris BL2]
          Length = 468

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 128/335 (38%), Gaps = 54/335 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSG 125
           AE +VVS+A         I+ N P L      +   +  + +  +    +  +A+ GT G
Sbjct: 67  AEVVVVSTA---------IKRNNPELAYARELRLPVVRRAEMLAELMRLKQCVAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  + +  G     I     I+++  ++RL                      +
Sbjct: 118 KTTTTSLVATLLEAGGFDPTVIN-GGIINAYGTNSRLGAGD-----------------WM 159

Query: 186 SVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VEA     D+     +KL A     TN+  +H+D+  T +    A  R F E +P    
Sbjct: 160 VVEA-----DESDGTFLKLPADVAIITNIDPEHLDHFGTFENIRKA-FRSFVENIPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           A++  D    +E++ +  +           A  R++ +   G       V  + +++   
Sbjct: 214 AVMCLDHPTVQELVGQIEDRRVITYGENPHADVRLVDIDLAGGMSRFSVV--VRDRKSGG 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +V  K    L P+PG     NA  A  +   +G+    +   L     V  RF   G  
Sbjct: 272 ETVIEK---ILMPMPGLHNALNATAAIAVAHQLGMSPDQIRGALAGFGGVKRRFTRTG-E 327

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             G  ++ DYAH    +  +LK  R  T GR+I +
Sbjct: 328 WNGAIVFDDYAHHPVEIAAVLKAARASTKGRVIAI 362


>gi|291529269|emb|CBK94855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale M104/1]
          Length = 453

 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 25/223 (11%)

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S G T    E SS  L+   +D  K    +  N+  DH++ H T + Y  AK     E +
Sbjct: 155 STGETVTVAEISSFQLET--IDTFKPHVSAILNITPDHLNRHHTMENYIRAK-----EDI 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-------QGKFIHLKKVCAIHNKQQV 291
            K   A  Y    Y  EV+ R   A C    + +       +G ++    +   H+  + 
Sbjct: 208 TKNQTADDYCVLNYEDEVL-RNFAAECPAKVIFFSSRSELSEGFYLDGDIIIYAHDGVRD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++  + + L    G+    N + A  + I+ G+    ++E L+K   V  R E+V T
Sbjct: 267 KV-IDVNELNLL----GKHNFENVMAACAMSISFGVPMDKIVEVLKKFKAVEHRIEYV-T 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
             RG R Y D   T+   +  ++ IR +   R  ++ G G D+
Sbjct: 321 EKRGVRFYNDSKGTNP--DAAIQGIRAMN--RPTLLIGGGYDK 359


>gi|251792024|ref|YP_003006744.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533411|gb|ACS96657.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 476

 Score = 43.5 bits (101), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 127/337 (37%), Gaps = 55/337 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V+SSA    +          I V+   +    L   R +G      +AV GT GK
Sbjct: 77  GASVVVISSAIHGDNPEVMAAKKARIPVIQRAQMLAELMRFR-HG------IAVAGTHGK 129

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           ++  + V  I  ++GL    +     +   A  N     S   +A+A     S+L  Q +
Sbjct: 130 TTTTAMVSMIYAQAGLDPTFV--NGGLVKSAGTNAHLGCSRYLIAEADESDASFLHLQPM 187

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +        +D +                  H D+ + +Q Y N     F   LP   
Sbjct: 188 ISIVTNIEPDHMDTY------------------HGDFDEMKQTYVN-----FLHNLPFYG 224

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-------TISV 295
            A++ ADDA   ++M      G +V++ G+     +      I + QQ         I  
Sbjct: 225 LAVLCADDA---DLMSLVPQVGRQVITYGFSENADY-----RIEDYQQTGFQGHYTVICP 276

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR- 354
            G+  D L  +PG     NA  A  +    GI +  +L  L        RF+ +G   R 
Sbjct: 277 NGERIDVLLNVPGRHNALNATAALVVAKEEGIKNEAILAALADFQGAGRRFDQLGQFIRP 336

Query: 355 GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            G++ +  DY H    + + ++  R    + R++++F
Sbjct: 337 NGKVMLVDDYGHHPTEVGVTIQAARQGWENKRVVMIF 373


>gi|229006196|ref|ZP_04163882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
 gi|228755037|gb|EEM04396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 21/166 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD    +VM  + N+ G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEADY-SVINADDV---DVMALSANSKGQ 239

Query: 266 RVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +VL     V   G  I   K  A++ K +  + V+    D +  LPG+  + N L A  +
Sbjct: 240 KVLFSATKVIEDGACI---KDGALYFKGEKIVEVQ----DIV--LPGKHNLENILAAMSI 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
              +G+++  ++  L++   V  R E+V T N+R  + Y D   T+
Sbjct: 291 AKLLGVENEAIIAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|91228515|ref|ZP_01262437.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
 gi|91187949|gb|EAS74259.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
          Length = 485

 Score = 43.5 bits (101), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 111/293 (37%), Gaps = 62/293 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F  L +  ID+             
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHN---------- 223

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSV---GYQGKFIHL 279
                LP    AI+  DD   +E++ R          + +A  R+      G QGKF  +
Sbjct: 224 -----LPFYGQAIVCIDDPVVRELIPRISRQVITYGFSEDADVRIEDYRQEGQQGKFTVV 278

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +K  A              + D    +PG     NA  A  +     I+   +L+ +   
Sbjct: 279 RKGRA--------------NLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGT 324

Query: 340 HVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                RF+ +G    G     +  DY H    +++ +   R+     R++++F
Sbjct: 325 QGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIF 377


>gi|241763201|ref|ZP_04761260.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
 gi|241367700|gb|EER61966.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
          Length = 859

 Score = 43.5 bits (101), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 78/390 (20%), Positives = 153/390 (39%), Gaps = 42/390 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LFA    G+ P  ++AVTGT+GK++ A  +  +    G+   ++G T+T   +    ++ 
Sbjct: 460 LFAHGDDGRIP--VVAVTGTNGKTTTARLIAHLFTAQGM---RVGMTNTDGVYVNGRQID 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DYH 220
           +        A + L    V     E +  G+ +  L   +      TN+G  DH+  +Y 
Sbjct: 515 SGDCSGPKSARNVLLHPEVDAAVFETARGGILREGLGFDRCQVAVVTNIGAGDHLGLNYI 574

Query: 221 QTQQAYFNAKMRLFEELLPK-------ESPAIIYADDAYSKEVM----KRAHNAGCRVLS 269
            T +     K  + + + P          P +     A   +++     R H       +
Sbjct: 575 TTVEDLAVLKRVIVQNVTPTGYAVLNATDPIVAAMASACPGKIIYFASDRHHPVMATHRA 634

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G++  ++    + A     + TI +  +D          FQV N + +       G+  
Sbjct: 635 QGHRTVYVDGDSIVAAEGSWRETIHL--RDVPITRNGKIGFQVENVMASVAAAWGAGLPW 692

Query: 330 ALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RI 384
             +   L          PGRF  +  + +G  +  DY H  +++  +++ +  + +  R 
Sbjct: 693 QTIRRGLSGFVNDSDNAPGRFNLM--DFKGATVIADYGHNPDAMRALVQAVEALPANRRS 750

Query: 385 IVVFGCGGDRDQGKRP---IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           +V+ G G  RD+  R    I+G++     D+ +  D   R     ++ A +  G+ G   
Sbjct: 751 VVISGAGDRRDEDIREQTVILGEV---FDDVILYQDAAQRGRGDGEVMALLREGLAGAT- 806

Query: 442 KGNRIEAIR-------TAIEMLNKQDVLVV 464
           +   IE IR        A++ L   D+ +V
Sbjct: 807 RTQHIEEIRGEFIAIDAALDRLKSGDLCLV 836


>gi|163855000|ref|YP_001629298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           petrii DSM 12804]
 gi|163258728|emb|CAP41027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bordetella petrii]
          Length = 509

 Score = 43.5 bits (101), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 25/141 (17%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTIS 154
            R    L  SR Y   P  +L VTGT+GK++V +  +Q+ +  G++   +  IGP +  +
Sbjct: 117 ARALAELAESRDY--RP-RLLTVTGTNGKTTVTALTRQLVEAGGMTVRAAGNIGPAALAA 173

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                +    P    L                 E SS  L+  R   +   A    N+ +
Sbjct: 174 LIDALDADDLPQVWVL-----------------ELSSFQLETTR--SLMADAAVVLNVTQ 214

Query: 215 DHIDYHQTQQAYFNAKMRLFE 235
           DH+D+H    AY  AK RL +
Sbjct: 215 DHLDWHGGMDAYAQAKARLLK 235


>gi|297181730|gb|ADI17911.1| folylpolyglutamate synthase [uncultured Desulfobacterales bacterium
           HF0200_07G10]
          Length = 443

 Score = 43.5 bits (101), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEK-LHVVP--GRFEFVGTNSRGG 356
           +   PL G FQ  NA +A   C+A+  +   +  EHL + L +V   GR E V  N    
Sbjct: 249 NLTLPLNGHFQRNNAGLALSACLALNENGFNIEEEHLRQGLEMVSWEGRLETVSFNP--- 305

Query: 357 RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAI 414
            + +D AH  +S++ + K +R      R  +V G   D++  +   + KI   L D   +
Sbjct: 306 TVVLDCAHNEDSVKNMTKELRENFKFSRCFIVLGLMQDKNIDE---IIKILSRLGDQFFL 362

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           V+ + PR E  EK+  ++          G   +A++    + N+ D++ + G
Sbjct: 363 VSVNPPRGETSEKLAKKLKSHNKASQAFGTISDALQAVKHIANQDDLICITG 414


>gi|269978141|ref|ZP_06185091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|306818514|ref|ZP_07452237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|269933650|gb|EEZ90234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|304648687|gb|EFM45989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 483

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS---LQDFSATIRSN 89
           V++DSR I+AG +FVA+ G   DGH F+     +G +  VV+        QD++      
Sbjct: 28  VNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVAVVTKNRDEILAQDWATEEELG 87

Query: 90  TPILV-VDNTRKFLSLFA----------SRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             IL+ VD+ +  L   A          +R      + ++ +TG++GK++     +Q+  
Sbjct: 88  KLILLQVDDAQIALGKIAQAHLEQLRSRARNGSGKLKLVIGITGSAGKTTTKDLARQLLS 147

Query: 139 RSG 141
             G
Sbjct: 148 AKG 150


>gi|148244846|ref|YP_001219540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326673|dbj|BAF61816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 123/307 (40%), Gaps = 76/307 (24%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           E   +FI   IAQ +E IV             ++ N PI V D     + LF+   + K 
Sbjct: 61  EVDEVFISPGIAQ-SETIV----------GWAMKKNIPI-VSD-----IELFSR--FAKA 101

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++ +TG++GKS+V   + Q+   SG+              A    +  P       A
Sbjct: 102 P--VIGITGSNGKSTVTKLLTQMIADSGM------------LVAIGGNIGIP-------A 140

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  L+ + + +  +E SS+ LD      + LI G   N+  DH+D + + + Y ++K+ L
Sbjct: 141 LDCLNEK-IEYYVLELSSYQLDYSY--HLNLITGVVLNITPDHLDRYSSFEYYIHSKLSL 197

Query: 234 F-----------EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           +           E L+PK++         +   + KRA++ G            +    +
Sbjct: 198 YQYCQYSVVNLDEPLIPKQTNV-----KYFGINIPKRANDFGT-----------VTCHNI 241

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           C +       +SV+         L GE    N L A  L   I +  + +++ ++    +
Sbjct: 242 CYLLKGNNTLMSVDE------VQLIGEHNTKNILAALALGDQIKLPISSMIQSIKNFKAL 295

Query: 343 PGRFEFV 349
             R E+V
Sbjct: 296 EHRLEWV 302


>gi|87123641|ref|ZP_01079491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
 gi|86168210|gb|EAQ69467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
          Length = 466

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 114/294 (38%), Gaps = 48/294 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK++V   +Q +    GL +   G                 S   LA +LS +
Sbjct: 113 IGITGTNGKTTVTQLLQHVLSSGGLHAPMAGNVGH-------------SATELALSLSAV 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +     +  ++++   ++A   G +T L  DH++ H T +AY   K  L 
Sbjct: 160 APNDGDPATPDWLVMEMSSYQIEAAAIVAPRIGIWTTLTPDHLERHGTLEAYRAIKRGLL 219

Query: 235 EELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           E    +    I  ADD+  S++     H            G +I             +  
Sbjct: 220 E----RSQIRIFNADDSDLSRQRASWDH------------GLWISAAGAGDGATAADLWC 263

Query: 294 SVEG----KDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             EG    +    LFP     +PG+    N L+     +  G++  ++   L     VP 
Sbjct: 264 DAEGVVHCRRRGPLFPASALAMPGDHNRQNMLLVTAAALEAGLEPEVIAAALRTFPGVPH 323

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           R E +G   +G +++ D   T  + +  +  +R++    +++    GG   QG+
Sbjct: 324 RLERLG-ELKGMQVFNDSKAT--NFDAAVVALRSVPRPAVVL---AGGQTKQGE 371


>gi|256027223|ref|ZP_05441057.1| dihydrofolate synthase [Fusobacterium sp. D11]
          Length = 411

 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 153/376 (40%), Gaps = 77/376 (20%)

Query: 103 SLFASRL----------YGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           S+F+ RL          Y  +P+N   ++ +TGT+GK SV++ V++I   +G   +++G 
Sbjct: 14  SMFSIRLGLDNIKEICKYLGNPQNSYKVIHITGTNGKGSVSTTVERILLEAG---YKVGK 70

Query: 150 TSTISSFAQDNRLT-----------------------------TPSPIYLAKALSYLSSQ 180
            ++      + R++                             T   +  A    Y    
Sbjct: 71  YTSPHILEFNERISFNDKYISNEDVAKYYEKVKKIIDEHNIQATFFEVTTAMMFDYFKDM 130

Query: 181 GVTHVSVEASSHGLDQHRLDGIKL---IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              +V +EA   G    R D   +   I    TN+  +H +Y      Y  AK +     
Sbjct: 131 KADYVILEAGMGG----RYDATNICDNIVSVITNVSLEHTEY-LGDTIYKIAKEK---AG 182

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISV 295
           + K  P  I+AD+  + +V K    A  + ++V   Y+    +L       N     I +
Sbjct: 183 IIKNCPYTIFADN--NPDVKKAIEEATDKYVNVLEKYKNSTYNLD-----FNTFSTNIFI 235

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G  +++   L G++Q  N L A  +   +GID  ++ E ++K+ V   RFE     S+ 
Sbjct: 236 NGNKYEY--SLFGDYQYKNFLCAYEVVKYLGIDENIIKEAVKKV-VWQCRFEVY---SKN 289

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  D AH    +E + K ++   +   + V+     D+D   R  M +   +++   I
Sbjct: 290 PLVIFDGAHNLAGVEELTKIVKQHFSKDEVTVLVSILKDKD---RVSMFRKLNEISSCII 346

Query: 415 VTD--DNPRSEDPEKI 428
           +T   DNPR+   +++
Sbjct: 347 LTSIPDNPRASTAKEL 362


>gi|228992648|ref|ZP_04152574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
 gi|228766980|gb|EEM15617.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 21/166 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD    +VM  + N+ G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEADY-SVINADDV---DVMALSANSKGQ 239

Query: 266 RVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +VL     V   G  I   K  A++ K +  + V+         LPG+  + N L A  +
Sbjct: 240 KVLFSTTKVIEDGACI---KDGALYFKGEKIVEVQD------IVLPGKHNLENILAAMSI 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
              +G+++  ++  L++   V  R E+V T N+R  + Y D   T+
Sbjct: 291 AKLLGVENEAIIAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|228998694|ref|ZP_04158281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
 gi|228761162|gb|EEM10121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 21/166 (12%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD    +VM  + N+ G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEADY-SVINADDV---DVMALSANSKGQ 239

Query: 266 RVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +VL     V   G  I   K  A++ K +  + V+         LPG+  + N L A  +
Sbjct: 240 KVLFSATKVIEDGACI---KDGALYFKGEKIVEVQD------IVLPGKHNLENILAAMSI 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
              +G+++  ++  L++   V  R E+V T N+R  + Y D   T+
Sbjct: 291 AKLLGVENEAIIAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|298490446|ref|YP_003720623.1| cyanophycin synthetase ['Nostoc azollae' 0708]
 gi|298232364|gb|ADI63500.1| cyanophycin synthetase ['Nostoc azollae' 0708]
          Length = 900

 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DD 418
           VDYAH   S E +   +R  T+G+ I V G  GDR       +GK++ D+ D  +V  DD
Sbjct: 742 VDYAHNPASYEALGSFVRNWTTGQRIGVIGGPGDRRDEDFVTLGKLSADIFDYILVKEDD 801

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           + R          II GI   ++  +R E+I    + +NK
Sbjct: 802 DTRGRLRGSASDLIIQGITQ-VKPNSRFESILDETQAINK 840


>gi|218460179|ref|ZP_03500270.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli Kim 5]
          Length = 336

 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   + NA  A  +   +GI S  + + L     V  RF   G  + G +I+ D
Sbjct: 200 LVMPMPGRHNISNATAAIAVANRLGISSEDIAKGLASFGGVKRRFTLTGEWN-GVQIFDD 258

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV 387
           Y H    ++ +L+  R    GRII V
Sbjct: 259 YGHHPVEIKAVLRAAREACKGRIIAV 284


>gi|325954319|ref|YP_004237979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
 gi|323436937|gb|ADX67401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
          Length = 443

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 117/302 (38%), Gaps = 49/302 (16%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPE 115
           I    A   EA ++S+   ++  S  I  N P+++    ++   +    FASR       
Sbjct: 48  IEYEFAHHTEAKIMSADLVVK--SPGIPENVPLIMALKAKQIEVISEIEFASRF---TES 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKAL 174
            I+A+TG++GK++  S +  I + +GL    +G    I  SFAQ   L    P       
Sbjct: 103 KIIAITGSNGKTTTTSLMYHIMKEAGL---DVGLCGNIGKSFAQ---LVAEDP------- 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRL 233
                    +  +E SS  LD  R    K       N+  DH+D Y      Y ++K R+
Sbjct: 150 -------HEYYVIEISSFQLDDIRF--FKPYIAIILNITPDHLDRYENNFDKYAHSKFRI 200

Query: 234 FEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            E    KE    +Y  DD    E++K         +        +  KK  A  N++   
Sbjct: 201 TENQTDKE--YFVYNVDDEKINELIKELK------IKANKTSFSMKDKKQKAYANEK--I 250

Query: 293 ISVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             ++  D  FL P     L G+  V N+L AA     + I   ++   L     V  R E
Sbjct: 251 FEIKDNDNSFLMPIADLGLIGKHNVSNSLAAATAANILKIRKDVIKRSLSDFKSVEHRLE 310

Query: 348 FV 349
            V
Sbjct: 311 NV 312


>gi|307720528|ref|YP_003891668.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978621|gb|ADN08656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 113/298 (37%), Gaps = 78/298 (26%)

Query: 106 ASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            + L  KH +N I+ VTGT GKS++ + +  + + +G  S   G   T  +F     L  
Sbjct: 87  TTELLLKHFKNQIIGVTGTKGKSTLVTLIDSLLKNAGKKSVLCGNIGT-PAFDILENLDD 145

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            + I +      LSS  + HV+   S H                 TNL  +H+DY++   
Sbjct: 146 ETTIVME-----LSSHQLYHVNY--SVH-------------IAILTNLFEEHLDYYKDVD 185

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLK 280
            Y++AK  +F  L  K++   IY       + + R +N     L        Q  FIH  
Sbjct: 186 EYYSAKFNIF--LHQKKNDIFIYN----LPQKLTRGYNVHENELKYNVDFNLQNGFIHKS 239

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +  +   +++                                 + +D A+ L  +++  
Sbjct: 240 TLQILEKLKEI---------------------------------LALDDAVYLRTIQEFK 266

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHT--SNSLEM--ILKNIRTITSGRIIVVFGCGGDR 394
            +P R EFV  N +G     D   T    ++E   ILKN+ T+  G        G DR
Sbjct: 267 TLPHRLEFV-KNIKGVSYINDSISTIPQATIEAVKILKNVDTLILG--------GNDR 315


>gi|260752700|ref|YP_003225593.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552063|gb|ACV75009.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 441

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 55/255 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TGT+GKS+  + +  I + +GL +  +G    +   A D     P P         
Sbjct: 124 VVGITGTNGKSTTTALIHHILKEAGLPTL-MGGNIGLPLLAAD-----PLP--------- 168

Query: 177 LSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               G  +V +E SS+ +D    LD    +    TN+  DH+D H   + Y  AK RLF 
Sbjct: 169 ---DGGVYV-LELSSYQIDLTFTLDCDIAV---LTNITPDHLDRHGGFEGYRKAKERLF- 220

Query: 236 ELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             L + SP  A+I  DD  S+ + K++                     + A+H      I
Sbjct: 221 --LLQSSPHYAVIATDDIPSQVIAKQS------------------AAHLVAVHAD---NI 257

Query: 294 SVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           S E +     +P L G     N ++A  +   +GI   ++ + L     +P R + +G  
Sbjct: 258 SAEDQ---VNWPNLQGPHNAQNTVLAMAVAHILGISDDVISKALISYAGLPHRMQKIG-- 312

Query: 353 SRGGRIYVDYAHTSN 367
            R G +++D +  +N
Sbjct: 313 ERRGVLFIDDSKATN 327


>gi|85714971|ref|ZP_01045956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
 gi|85698168|gb|EAQ36040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
          Length = 466

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 22/153 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + V  + + +G    Q+G     +  +    L  P            
Sbjct: 117 VAITGTNGKSTTTALVAHLMREAG-HDVQMGGNIGTAILS----LEAPR----------- 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  HV +E SS+ +D      +    G   N+  DH+D H T + Y   K RL   +
Sbjct: 161 --RGRVHV-IEMSSYQIDL--APSLDPTVGILLNVSPDHLDRHGTIEHYAEVKERLIAGV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            P+ + A++  DD +   +  R   AG  V+ V
Sbjct: 216 QPQGT-AVVGVDDRWCAAIADRQERAGRNVVRV 247


>gi|321312518|ref|YP_004204805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
 gi|320018792|gb|ADV93778.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 103/284 (36%), Gaps = 60/284 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + Q +  +SF IG  +      Q N                 
Sbjct: 104 VAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGDGT-----GQGNE---------------- 142

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S+     + E   H L       I       TN+  DH DY  +    F+A    F+E+
Sbjct: 143 NSEYFVFEACEYRRHFLSYQPDYAI------MTNIDFDHPDYFSSIDDVFDA----FQEM 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             + +  II   D    E + + H N        G +  F            + +  S E
Sbjct: 193 ALQVNKGIIACGD---DEHLPKIHANVPVVYYGTGEENDF----------QARNIVKSTE 239

Query: 297 GKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           G  FD          F  P  G   V N+L    LC    IDS+++   L+    V  RF
Sbjct: 240 GTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRF 299

Query: 347 EFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVF 388
                   G ++ + DYAH    +++ ++  R     R I+ VF
Sbjct: 300 ---NEKQLGDQVLIDDYAHHPTEIKVTIEAARQKYPDREIVAVF 340


>gi|283782955|ref|YP_003373709.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Gardnerella vaginalis 409-05]
 gi|283441889|gb|ADB14355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Gardnerella vaginalis 409-05]
          Length = 599

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 29/226 (12%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           FP    +      + D+R I++G +   I GN +  +L    A  +G  A V   +Y+  
Sbjct: 62  FPNIDADEYFTNATYDTRDIKSGTLLF-IKGNFKSEYLL--DADNKGLAAYVAEQSYA-- 116

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC 137
            ++  +      L+V + +K +S+ A+  +G +P+  L + G   T GK++ A F   I 
Sbjct: 117 QYTKAVG-----LIVTDAKKAMSVLAAAFFG-NPQEKLTIVGITGTKGKTTTAYFTHAI- 169

Query: 138 QRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               L+S   G  +  SS           ++ LTTP      K +       + ++ +E 
Sbjct: 170 ----LNSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNDMKYLVMEV 225

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
           SS     +R+ G+K    +F N+  DHI    H T + Y   K ++
Sbjct: 226 SSQAYKVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQI 271



 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 28/217 (12%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRI 358
           +F   + G+F   NAL A  +   +GI+    L  L  +  V   GR E           
Sbjct: 389 EFALSIAGDFNYENALAAIAIAGELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIA 448

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            VDYAH   S + +L  +       + RI ++ G  GD+   +R  + + A +  +  I 
Sbjct: 449 VVDYAHNYISTKSVLDFVEERYGKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIF 508

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAI------EMLN-KQD 460
           T ++  +ED       I   +  ++   N        R EAI  A       E  N + +
Sbjct: 509 TTEDTDTEDV----MHICEDMQSYVTNPNVSSRIIIDRAEAIECAYNDAASSEQKNGRLN 564

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495
           +L+  GKG E    + N  K +  + D  +I+ + GL
Sbjct: 565 ILLAIGKGDE--RWIKNKRKHVPYEGDSFVIKRLFGL 599


>gi|91785292|ref|YP_560498.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
 gi|123168040|sp|Q13TZ3|MURC_BURXL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91689246|gb|ABE32446.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
          Length = 467

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 110/290 (37%), Gaps = 39/290 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    R+   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL T   I              
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV------------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                 A +   D   L+   +I    TN+  DH+D +    A        F   LP   
Sbjct: 159 ------AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE-GKDF 300
            A++  DD   KE++         ++  G+     +    V A   K   T   E     
Sbjct: 212 IAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPL 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G
Sbjct: 269 DIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYG 318


>gi|325134883|gb|EGC57516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M13399]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A GA A+VV
Sbjct: 8   FICQALKLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVV 67

Query: 74  S--SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           S     SL+D           L VD+T   L   A          +  +TG+ GK++V  
Sbjct: 68  SREDCASLKD----------ALKVDDTLAALQTLAKAWRENVDPFVFGITGSVGKTTVKE 117

Query: 132 FVQQICQR 139
            +  + +R
Sbjct: 118 MLAAVLRR 125


>gi|238760095|ref|ZP_04621245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
 gi|238701714|gb|EEP94281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
          Length = 444

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 36/238 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ + +G   +Q+G    I   A    L+    + L K  + 
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGVPA----LSLLKQLTLQKHENQ 159

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L    ++   +E +S  L +         A +  N+  DH D Y    Q Y  AK+R++E
Sbjct: 160 LVVLELSSFQLETTSSLLAK---------AATLLNVTEDHTDRYPFGLQQYRAAKLRVYE 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  V      A  R +S G      HL       NKQQ  I +
Sbjct: 211 ----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGEIWL 255

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +    L      L G     NAL A  L  A+GI  +  L+ L     +  RF+ V
Sbjct: 256 RVRGEKVLNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLSHRFQLV 313


>gi|149198201|ref|ZP_01875248.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
 gi|149138803|gb|EDM27209.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 28/220 (12%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           SD+R      +F A  G+  DGH ++  A+ +GA  +VV+    L     T+ S   I V
Sbjct: 30  SDTRKDLTDTVFFAFEGDNFDGHNYLDLAVEKGARVLVVAKEVEL----LTLDSVAMIKV 85

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            D  + +  L    L  +       +TG+SGK+S  + + Q+ +        I P   +S
Sbjct: 86  DDTVKAWQRLGHFLLQKQKSARRFGITGSSGKTSTNAILSQLLEF-------IRPKQVLS 138

Query: 155 SFAQDNRL--TTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLI---AGS 208
           +    N     T + + L    S+ S + G  H    A          D  K++   A  
Sbjct: 139 THGNTNNHIGVTQNIVRLKGDESFFSLEVGTNHPGEIA----------DLAKIVVPHAAI 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            T++G  HI       A F+ K+ +F   + ++  AI+ A
Sbjct: 189 LTSVGASHIGNFSGIDAIFDEKIDIF-RYMARDGVAIVPA 227


>gi|90413038|ref|ZP_01221036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum 3TCK]
 gi|90326053|gb|EAS42492.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum 3TCK]
          Length = 447

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V S + ++ + +   S  +G    I  FA  + L     +Y+ +  S+
Sbjct: 110 VVAITGSNGKSTVTSLIGEMAKEA---SINVGVGGNIG-FAALDMLANEHDLYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                     +E +S          ++L A  + NL  DH+D +   + Y  AKMR+FE
Sbjct: 166 ---------QLETTSS---------LELKAAVYLNLSEDHMDRYDGIEDYSLAKMRIFE 206


>gi|55977152|gb|AAV68370.1| unknown [Herminiimonas arsenicoxydans]
          Length = 414

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 122/310 (39%), Gaps = 31/310 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA    G+ P  ++AV GT+GK++    +  I Q    +  ++G T+T   + ++ R+
Sbjct: 20  TMFAEGDDGRIP--VVAVAGTNGKTTTVRLIAHILQ---ANKHRVGMTTTDGVYIENQRI 74

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI--DY 219
            T        A + L    V     E +  G+ +  L   +      TN+G  DH+  ++
Sbjct: 75  DTGDCSGPRSARNVLMHPDVDAAVFETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNF 134

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-------EVMKRAHNAGCRVLSV-- 270
             T +     K  + + + P  +  +  AD   +         V   A +    VL+   
Sbjct: 135 ISTVEDLAVVKRVIVQNVAPNGTAVLNAADPMVANMAASCPGSVTFFAKDGNHAVLATHR 194

Query: 271 --GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG--EFQVYNALVAAGLCIAIG 326
             G++  F+    + A     +  I++     D      G   FQ+ NA+ A G   ++ 
Sbjct: 195 AKGHRVVFLDGTSIVASEGAFEHRIALA----DIAITHNGLIGFQIENAMAAIGAAWSLN 250

Query: 327 IDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   +VL  L          PGRF        G  +  DY H  +++E +   +  + + 
Sbjct: 251 LSWDIVLNGLRTFENSAATTPGRFNLF--THHGATVIADYGHNPDAIEALTHAVEAMPAK 308

Query: 383 RIIVVFGCGG 392
           R +VV    G
Sbjct: 309 RRMVVISGAG 318


>gi|84394433|ref|ZP_00993149.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus 12B01]
 gi|84374932|gb|EAP91863.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus 12B01]
          Length = 373

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 96/246 (39%), Gaps = 40/246 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSVGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A M 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAVMC 233

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  EL+P+ S  +I     +S++   R  N     +  G QGKF  ++K  A    
Sbjct: 234 VDDPVVRELIPQVSRQVITY--GFSEDADIRIEN----YVQQGQQGKFTVVRKGKA---- 283

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                     + D    +PG     NA  A  +     I    +L+ +        RF+ 
Sbjct: 284 ----------NLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDH 333

Query: 349 VGTNSR 354
           +G   R
Sbjct: 334 LGDMKR 339


>gi|291336143|gb|ADD95723.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C161]
          Length = 833

 Score = 43.5 bits (101), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 31/219 (14%)

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--------Q 290
           PK    ++  DD ++ E++     + C+V  V Y  +  H + +  ++ ++         
Sbjct: 486 PKHQRVVVNLDDDFASEII-----SNCKVPVVTYARRREH-RDIADVYCERVDLSLFETA 539

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           V +S    + + +  L G+  V N L  +A+GL   I +++  + + L + +   GR E 
Sbjct: 540 VLVSTPVGETEIVTALVGDANVSNVLASIASGLATEIPLEN--IAQGLGRANPAGGRMEL 597

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDR-------DQGKRP 400
           V    +   + VD A T   +   +++ R I   R +IVV G  G         D G   
Sbjct: 598 VDEGQKFCAL-VDSAKTPEDVMNAIQSARAIPQCRRVIVVVGADGTNNDINATIDNGTEK 656

Query: 401 IM----GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            M    G+     AD+  VT  +P++ED   +  +++ G
Sbjct: 657 AMRRKLGETVDKYADVVFVTTQSPKNEDAYDLLEDVVDG 695


>gi|262276877|ref|ZP_06054670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
 gi|262223980|gb|EEY74439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
          Length = 443

 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++   +F+ I G   DGH +    + +    I++    S+  +   ++++  ++  
Sbjct: 17  DSRLVKENSVFLCIKGPNNDGHKYAKLVLDRFKRTIIICEKNSI--YLKNLKNSNRVIFC 74

Query: 96  DNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++T+ FL +L   + Y  + +N + +TG+SGK+S+   +
Sbjct: 75  NSTKDFLINLARIKRYLLNSKNFIGITGSSGKTSLKDLL 113


>gi|229198024|ref|ZP_04324738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
 gi|228585503|gb|EEK43607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G +VL S   + +     K  A++ K +  + V          LPG
Sbjct: 227 A---DVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVEVGD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G+ +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSISKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|227550457|ref|ZP_03980506.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257897140|ref|ZP_05676793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|293377364|ref|ZP_06623568.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
 gi|227180358|gb|EEI61330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257833705|gb|EEV60126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|292644056|gb|EFF62162.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
          Length = 453

 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 22/191 (11%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   HIDYH T++ Y  AK  L + +  ++   + +       E+ + A     RVL
Sbjct: 188 ITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLNWNQS----ELQELAQRTKARVL 243

Query: 269 SVGYQGKFIHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              +  K +    V A    I+ K++  + +          +PG   V NAL A  +   
Sbjct: 244 P--FSTKEVLEDGVYADDHAIYYKKEKIMEISE------LGVPGTHNVENALAAITVAKL 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGR 383
            G+ +  + + L   H VP R ++VG   +G + Y D   T+  + +M L    T     
Sbjct: 296 YGVSNEAIRQTLHLFHGVPHRTQYVG-EIQGRKFYNDSKATNILATKMALSGFETAK--- 351

Query: 384 IIVVFGCGGDR 394
            +V+   G DR
Sbjct: 352 -VVLLAGGLDR 361


>gi|310826356|ref|YP_003958713.1| hypothetical protein ELI_0736 [Eubacterium limosum KIST612]
 gi|308738090|gb|ADO35750.1| hypothetical protein ELI_0736 [Eubacterium limosum KIST612]
          Length = 438

 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 137/370 (37%), Gaps = 84/370 (22%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSS--FQIGPTSTISSFAQDNRLTTPS----------- 166
           V GT+GK SV++ +  I + +G ++  +      T +   Q N +  P            
Sbjct: 44  VAGTNGKGSVSTMLSTILKTAGYTTGLYTSPALETFNERVQLNNVPIPDDDLMQVTKKVQ 103

Query: 167 -----------------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---- 205
                             I  A A  Y   +G     VE    G    RLD   +I    
Sbjct: 104 AACDTLVAKGEPHPTGFEIETALAFEYFYEKGADLCVVEVGMGG----RLDATNIIPSPE 159

Query: 206 AGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEE-----LLPKESPA----IIYADDAYSKE 255
           A    ++  DH DY   T       K  + +E     + P+E  A    + YA    +  
Sbjct: 160 AVVIMSISLDHTDYLGDTIGKIAGEKAAIIKEGTSVVIYPQEKEAEDVIVSYAQSMKAPF 219

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +    N  CRV S    G+ +  KK   I           G D  F   L GE Q+ N 
Sbjct: 220 TIVNPDNI-CRV-SESLDGQVLKYKKPGGI----------AGLD-TFRLKLLGEHQILNC 266

Query: 316 LVAAG-----LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           L         L     I ++ +   L  +    GRFE +  +     I +D AH  N +E
Sbjct: 267 LTVLNTLEILLKKGYAIPTSAITAGLSDV-TFHGRFEILHHDPI---ILIDGAHNPNGIE 322

Query: 371 MILKNIRTITSG-RIIVVFGCGGDRD-----QGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +KNI+T   G +I + FG   D+D     +   P+ G       D+  +T +N R+  
Sbjct: 323 YFVKNIKTYFPGNKINLYFGMLADKDIDLALKYLMPVTG-------DVHALTPENDRALP 375

Query: 425 PEKIRAEIIH 434
            +K+ AE+IH
Sbjct: 376 ADKM-AELIH 384


>gi|218778063|ref|YP_002429381.1| FolC bifunctional protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759447|gb|ACL01913.1| FolC bifunctional protein [Desulfatibacillum alkenivorans AK-01]
          Length = 444

 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVD 361
           L GE+Q+ NA +A   C A+    A + E   K  +     PGR E   T      + +D
Sbjct: 250 LKGEYQIPNASLALAGCQALTKRGAKITEEQAKAGLEQVKWPGRLE---TIQESPMVILD 306

Query: 362 YAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDN 419
            AH   +++++ K +    + R + V+ G   D+   K  P++  +A   A I I     
Sbjct: 307 GAHNLAAMKVLTKYLAETFADRDVTVITGFLDDKPYKKMLPMLEALA---AKIIITRPKI 363

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R+ + +++   I +    F+EK +  EA++ A+E     DV+VVAG
Sbjct: 364 GRAVETKELTPLIRNKKDRFVEKPSVEEAVKYALENARDTDVIVVAG 410


>gi|149175312|ref|ZP_01853934.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
 gi|148845921|gb|EDL60262.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
          Length = 486

 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 109/264 (41%), Gaps = 32/264 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQD-NRLTTPSPIYLAKAL 174
           + + GT GKS+  +    I Q +G+S     P++ I +   +Q+ N       +++A++ 
Sbjct: 131 VCIAGTHGKSTTTALTAFILQNAGVS-----PSAVIGAELCSQNLNGWAGEGALFVAESC 185

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y                   Q     +     + TN+  DH DY + Q     A    F
Sbjct: 186 EY-------------------QRSFLNLFPFYAAITNIEPDHFDYFKNQDDMTTAYAE-F 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +PK    ++        + ++ A  A     S+  +G       + +     +  + 
Sbjct: 226 VARIPKGG-TLVLPSTCMGLQKLREACKAKISTFSLE-RGADWWATDIKSTAFGLRFRLF 283

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+ F +      G+  V NA+VAA LC   GID+  + E + +   +  R+E +G+  
Sbjct: 284 HQGEYFSEISLQKTGKHNVSNAMVAAILCHTAGIDAEQIREGIYEFPGIRRRYERMGSY- 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR 377
           +G  ++ DYAH   +++  LK +R
Sbjct: 343 KGLTLFDDYAHHPTAIQATLKMLR 366


>gi|187925441|ref|YP_001897083.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phytofirmans
           PsJN]
 gi|229486478|sp|B2SYX4|MURC_BURPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187716635|gb|ACD17859.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 112/290 (38%), Gaps = 39/290 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    R+   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL T   I              
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV------------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                 A +   D   L+   +I    TN+  DH+D +    A        F   LP   
Sbjct: 159 ------AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDF 300
            A++  DD   KE++        R   +   Q + +++K   A   K   T   E     
Sbjct: 212 IAVLCVDDPNVKEILPFVSKPIIRYGFAPDAQVRAVNVK---AHDGKMHFTAMREDAAPI 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G
Sbjct: 269 DIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYG 318


>gi|89055250|ref|YP_510701.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
 gi|109892708|sp|Q28NN6|MURC_JANSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|88864799|gb|ABD55676.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
          Length = 474

 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+ +  + E L+    V  RF  VG    G  +  DY 
Sbjct: 281 LPMPGDHNVSNALAAVAVARHLGMKADEIREALDGFKGVNRRFTKVGEVG-GITVIDDYG 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R  + GR+I V
Sbjct: 340 HHPVEIAAVLKAARQASDGRVIAV 363


>gi|307700756|ref|ZP_07637781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
 gi|307613751|gb|EFN92995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
          Length = 483

 Score = 43.5 bits (101), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS---LQDFSATIRSN 89
           V++DSR I+AG +FVA+ G   DGH F+     +G +  VV+        QD++      
Sbjct: 28  VNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVAVVTKNRDEILAQDWATEEELG 87

Query: 90  TPILV-VDNTRKFLSLFA----------SRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             IL+ VD+ +  L   A          +R      + ++ +TG++GK++     +Q+  
Sbjct: 88  KLILLQVDDAQIALGKIAQAHLEQLRSRARNGSGKLKLVIGITGSAGKTTTKDLARQLLS 147

Query: 139 RSG 141
             G
Sbjct: 148 AKG 150


>gi|56696080|ref|YP_166434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ruegeria
           pomeroyi DSS-3]
 gi|62900661|sp|Q5LU71|MURD_SILPO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56677817|gb|AAV94483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria pomeroyi
           DSS-3]
          Length = 466

 Score = 43.5 bits (101), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 116/295 (39%), Gaps = 52/295 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK---- 172
           ++AVTG++GKS+ ++ +  I   +G                         P+ LA     
Sbjct: 122 VVAVTGSNGKSTTSALIHHILSEAG------------------------RPVQLAGNIGR 157

Query: 173 -ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L     +  + V +E SS+  D  R   +      FTNL  DH+D H     YF AK 
Sbjct: 158 GVLDIEPGEEGSVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKR 215

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSV-------GYQGKFIHLKKV 282
           RLF E  P    A+I  D++    +  +        RV+ V       G   +    K  
Sbjct: 216 RLFAEGGPDR--AVIGVDESEGLYLAGQMSEGPGDDRVIRVSVSRKLTGPGWQVFARKGY 273

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            + + K +   S++ +D   +  LPG     NA  A   C A+G+    +   +     +
Sbjct: 274 LSEYRKGRQAGSIDLRD---IRGLPGAHNHQNACAAYAACRALGLSPKAIEAGMRSYPGL 330

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           P R + V     GG  YV+ +  +N ++  LK +      R I    CGG + +G
Sbjct: 331 PHRSQIVA--EAGGVTYVNDSKATN-VDAALKALGAFKRIRWI----CGGLQKEG 378


>gi|225175194|ref|ZP_03729190.1| FolC bifunctional protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169370|gb|EEG78168.1| FolC bifunctional protein [Dethiobacter alkaliphilus AHT 1]
          Length = 431

 Score = 43.5 bits (101), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 146/361 (40%), Gaps = 81/361 (22%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQ----------DNRLTT--- 164
           + GT+GK S A+F+  + +  GL   Q+G  ++  + +F            +NRL     
Sbjct: 44  IAGTNGKGSTAAFLASMLEAQGL---QVGLYTSPYLEAFTNRMAINGGDIDENRLAELVT 100

Query: 165 ----------------PSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                           P+   +  AL+  Y + +    V +E    G    RLD   +I 
Sbjct: 101 QIRRHVEEISQTEAGQPTEFEVVTALAFLYFAEEQPDWVIMEVGLGG----RLDATNVIE 156

Query: 207 GS---FTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAIIYADDAYSKEVMKRAH 261
            +    TN+G +H     TQ          FE+  ++   +PA+  A+   + +V     
Sbjct: 157 PAVSVLTNIGLEH-----TQVLGDTISAIAFEKAGIIKPSTPAVTAAEKEDALQVF---- 207

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQ 311
               R ++V      + + +       +Q++ S++G+ F++             L G  Q
Sbjct: 208 ----RSVAVERGATLVEMDR---DFGYEQLSASLDGQVFNYWSRQRKLDNLQISLLGPHQ 260

Query: 312 VYNALVAAGL--CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           V NA +A      + + +D+  +   L      PGR E     SR   + VD AH  + +
Sbjct: 261 VRNAALAVATRELLPVPLDTDAIYRGLAAAKW-PGRLEVF---SRRPLVLVDGAHNIDGI 316

Query: 370 EMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEK 427
           + +   + TI  GR + +V G  GD+   +  I+  I  L  A + +   DNPR+ +P +
Sbjct: 317 KALKSALDTILDGRPLRLVLGILGDKAVDE--ILSLIVPLATAGLIVTKPDNPRASNPRE 374

Query: 428 I 428
           +
Sbjct: 375 V 375


>gi|329890779|ref|ZP_08269122.1| mur ligase middle domain protein [Brevundimonas diminuta ATCC
           11568]
 gi|328846080|gb|EGF95644.1| mur ligase middle domain protein [Brevundimonas diminuta ATCC
           11568]
          Length = 493

 Score = 43.5 bits (101), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 107/283 (37%), Gaps = 23/283 (8%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           S L+   P +I  V GTSGKS++   +  I  ++G +     PT  ++     N      
Sbjct: 128 SELFNAAPTSI-GVAGTSGKSTITGMIAWILDQAGRT-----PT-VVNGAVMKNFADADH 180

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
           P   A         G+    V+ S   +   R D    +    +N+  DH    + +   
Sbjct: 181 PFASALIGGANDENGLFVAEVDESDGSI--ARYDPTVAV---VSNISLDHKSMEELRD-- 233

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                 LF   + + + A++  D+  +  + +          ++G +   +    +  + 
Sbjct: 234 ------LFGGFVGRATTAVLNLDNPETAALAQTLETGKAITFALGEEEADLSAHDLQPLP 287

Query: 287 NKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                   V G+        +PG   V NAL A G   A+G+     +  LE    +  R
Sbjct: 288 TGMTFEFRVRGEAARAARLNVPGAHNVANALAALGAVKALGVGMDQAVAALETFSGIRRR 347

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            E VG  + G  +  D+AH  + +   LK +     GR++++F
Sbjct: 348 LEVVGARN-GVTVIDDFAHNPDKIAATLKTLHAF-DGRLLILF 388


>gi|148273044|ref|YP_001222605.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830974|emb|CAN01919.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 469

 Score = 43.5 bits (101), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 152/364 (41%), Gaps = 32/364 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I  G IFVA  G + DGHLF P A+  GA  ++V     L      +      
Sbjct: 33  VDTDSRLIARGGIFVAKPGEETDGHLFAPAAVEAGAALLLVERELDLPVPQVLVPD---- 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            VVD   +      +R+       ++AVTG++GK++  + +  I    G +       S 
Sbjct: 89  -VVDALGRLAHEVVARVRALGDLRMVAVTGSNGKTTTKNLLHAILSTQGET------VSP 141

Query: 153 ISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           ++SF  +N +  P + + + +   +L ++      + AS  G     +   K   G    
Sbjct: 142 VASF--NNEVGAPLTMLKVTRTTRFLVAE------MGASGLGEITRLIRMAKPDVGIVLT 193

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H       +     K  + ++LLP+++ A++ ADD     V   +      VL  G
Sbjct: 194 VGLAHAGGFGGIERTLVTKTEMVKDLLPEDT-AVLNADD---PRVSSMSDKTEAPVLWFG 249

Query: 272 YQGK-FIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +  +    + A       T+ + +G +    F + GE  V NAL AA    A+G+D 
Sbjct: 250 RDARAAVRATDIVASAAGTTFTLHLPDGSERPVSFRVLGEHHVTNALAAAAGAWALGVDG 309

Query: 330 ALVLEHLEKLHVVP-GRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI--TSGRII 385
             ++  L+ +      R E +G N  G  I  D Y  + +S+   L+ +  I     R +
Sbjct: 310 DAIVSALQTVQRAERWRMEVLGGN--GVTIINDAYNASPDSMAAALRTLAQIRGPEQRTV 367

Query: 386 VVFG 389
            V G
Sbjct: 368 AVLG 371


>gi|78187343|ref|YP_375386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium luteolum DSM 273]
 gi|78167245|gb|ABB24343.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 109/277 (39%), Gaps = 47/277 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + V GT GK++  S +  + +  GL   F +G      +F    R     P   ++A  +
Sbjct: 124 IVVAGTHGKTTTTSIIAWLLESGGLKPGFLVG--GIPENFGIGCR-----PSGRSEAGFF 176

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +S       +          +R D I LI     N+  DH D   + +       RL   
Sbjct: 177 VSEGDEYDTAFFDKRSKFLLYRPD-IALI----NNVEFDHADIFNSLEE-IKRSFRLLVN 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+P +   I+  DD  + EV   A  A CR+ + G       L + C       + +  E
Sbjct: 231 LIPSKGALIVNGDDPVAMEV---AAGARCRLETFG-------LTEGCDWM-AGNIDVGEE 279

Query: 297 GKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG-- 344
           G  FD  +          PL G + + N + +    IA+   + + LE +E+   +PG  
Sbjct: 280 GSTFDVYYKGSLLQRFHAPLFGNYNITNTVAS----IAVATLAGMTLEQVEE--GLPGFL 333

Query: 345 ----RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
               R E +GT      +  D+AH   ++ + L+ IR
Sbjct: 334 RPKRRMETIGTFEGNITLVEDFAHHPTAIRVTLEAIR 370


>gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
          Length = 835

 Score = 43.5 bits (101), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 149/376 (39%), Gaps = 42/376 (11%)

Query: 27  ERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ER I  + +DSR + +    +F A+     DGH +IPQ    G  A  +     ++ +  
Sbjct: 21  ERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLYEHGVRAFFICEP--IEPYVE 78

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               +  I+ V  T + L   AS    ++   ++ +TG++GK+ V  ++  +   SG   
Sbjct: 79  RY-PDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKTVVKEYLYHLL--SGCYR 135

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EAS-SHGLDQHRLDG- 201
               P S       +++L  P        LS L+ +    +++ EA  S  ++  RL   
Sbjct: 136 IVRSPKSY------NSQLGVP--------LSILNMEEEYTLAIFEAGISMPMEMLRLQRI 181

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I+   G  TN+G  H +   +       K++LF +       A  +  DA S E+ +   
Sbjct: 182 IRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVD-------ADHFVYDADSDEIQRGID 234

Query: 262 NAGCRVLSVGYQ---GK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-- 315
           N G    ++G+    GK + H+    +      +T     +      P   +  + NA  
Sbjct: 235 NLGLSDKAIGWSLTPGKAYYHVSYSHSGDCTTTITAQHADESSTVTIPFADQASIQNATH 294

Query: 316 -LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
            L   GL          VL     L  +  R E V     G R+  D Y +  NSL + L
Sbjct: 295 CLCLIGLLPLTTAQRQAVLARFATLEAIEMRLE-VKEGQAGNRLINDAYNNDINSLRIAL 353

Query: 374 --KNIRTITSGRIIVV 387
             +  RT TS +  V+
Sbjct: 354 DFQKQRTATSHQQAVI 369


>gi|262340887|ref|YP_003283742.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272224|gb|ACY40132.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 426

 Score = 43.5 bits (101), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 23/220 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + ++S+ ++ G IF+A+ G   DG+ F  +AI+ GA   +V            + S   I
Sbjct: 6   IETNSKKVKKGSIFIALKGKNFDGNQFAHEAISNGAMIAIVDDK--------RVFSCRKI 57

Query: 93  LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + VD++  FL   A   R   +H   I+A+TG++GK++     + I  R           
Sbjct: 58  IYVDDSLHFLQKLAMYHRYQLRHIP-IIAITGSNGKTTTKELTKTILSRKY-------EK 109

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              +    +N +  P  I     LS   +  ++ + + A+           IK   G  T
Sbjct: 110 VHFTKNNLNNHIGIPLTI-----LSMPINTQISVIEIGANHEKEIDKMCSIIKPDYGYIT 164

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           N G+ H++  ++ +     K+ L+  L   +    +  DD
Sbjct: 165 NFGKAHLEGFKSIEGIIRGKLELYNFLKKNKKVVFVNGDD 204


>gi|188584697|ref|YP_001916242.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349384|gb|ACB83654.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 894

 Score = 43.5 bits (101), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 80/396 (20%), Positives = 153/396 (38%), Gaps = 48/396 (12%)

Query: 104 LFASR---LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           LF  R   L  + P  +++VTGT+GK++    +  I + +G     +G TS+  +F +  
Sbjct: 472 LFNKRNDTLQARAP--VISVTGTNGKTTTVRAIDHILRSNGKD---VGMTSSDGTFIKGE 526

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--D 218
            + +        A + L    +     E +  GL ++ L          TN+  DH+  D
Sbjct: 527 LIDSGDNTGPNSAKALLKDPTIDSFVFETARGGLVKNGLGYSNAKVAVVTNIANDHLGQD 586

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
             ++       K  L  E + K+   ++ A D Y  + +++A     R++    +    +
Sbjct: 587 GIESIDDLIFVK-SLVVEAVEKQGVVVLNASDHYVSDFIRKAKG---RIIFYAMESDNHY 642

Query: 279 LKK-----VCAIHNKQQVTISVEGKDFDFL-----FPLP----GEFQVYNALVAAGLCIA 324
           +K        A++  Q   +   GK    L      PL         + N +      I 
Sbjct: 643 VKSHLAAGGSALYLDQDNIVYATGKFHRKLGEITQLPLTMAGMARHNIENCMAGIAAAIG 702

Query: 325 IGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            GI  +   E L++        PGR        +G  + +DY H    +  +L  +  + 
Sbjct: 703 FGIAPSKAFEVLKQFAPSYQDTPGRCNLF--RCQGKTVLLDYGHNPEGMNRVLAMVEKMP 760

Query: 381 SGRIIVVFGCGGDRDQ------GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             ++I V G  GDR+       GK  ++GK    +  + +  D + R     +    +  
Sbjct: 761 VEKVISVIGVPGDRNDKLIKETGK--VVGKYHELIEKVLVKEDSDLRGRKSGETANLLQT 818

Query: 435 GIPGFIEK------GNRIEAIRTAIEMLNKQDVLVV 464
            +  F E+         IEAI+TA+    + D++++
Sbjct: 819 TMTEFSEELAVEQNLQEIEAIKTALSEAGENDLVLI 854


>gi|29840624|ref|NP_829730.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           caviae GPIC]
 gi|33301359|sp|Q821S1|MURD_CHLCV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29834974|gb|AAP05608.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           caviae GPIC]
          Length = 419

 Score = 43.5 bits (101), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 40/179 (22%)

Query: 93  LVVDNTRKFLSL-------FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           LVV+  R+ + +       F    + ++P   + +TG++GK++   F+  + +  G+ +F
Sbjct: 75  LVVEAKRRGIPIVTDVQLAFQDPEFHRYPS--IGITGSAGKTTTVLFLVHLLRSMGMGAF 132

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G                  PI     L  +  +G+    VE SS  L +  ++   L 
Sbjct: 133 AMGNIGV--------------PI-----LQAMREKGIR--VVEISSFQLTEQEIETPVLS 171

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--------SPAIIYADDAYSKEV 256
             +  N+  +H+DYHQ+ Q Y  AK  + + L   E        SP   Y D  Y+KE+
Sbjct: 172 GAAILNISENHLDYHQSLQNYSEAKRNITKCLQSVESLWVGEWLSPGKSYLD--YTKEI 228


>gi|289765200|ref|ZP_06524578.1| folylpolyglutamate synthase [Fusobacterium sp. D11]
 gi|289716755|gb|EFD80767.1| folylpolyglutamate synthase [Fusobacterium sp. D11]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 150/370 (40%), Gaps = 77/370 (20%)

Query: 103 SLFASRL----------YGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           S+F+ RL          Y  +P+N   ++ +TGT+GK SV++ V++I   +G   +++G 
Sbjct: 18  SMFSIRLGLDNIKEICKYLGNPQNSYKVIHITGTNGKGSVSTTVERILLEAG---YKVGK 74

Query: 150 TSTISSFAQDNRLT-----------------------------TPSPIYLAKALSYLSSQ 180
            ++      + R++                             T   +  A    Y    
Sbjct: 75  YTSPHILEFNERISFNDKYISNEDVAKYYEKVKKIIDEHNIQATFFEVTTAMMFDYFKDM 134

Query: 181 GVTHVSVEASSHGLDQHRLDGIKL---IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              +V +EA   G    R D   +   I    TN+  +H +Y      Y  AK +     
Sbjct: 135 KADYVILEAGMGG----RYDATNICDNIVSVITNVSLEHTEY-LGDTIYKIAKEK---AG 186

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISV 295
           + K  P  I+AD+  + +V K    A  + ++V   Y+    +L       N     I +
Sbjct: 187 IIKNCPYTIFADN--NPDVKKAIEEATDKYVNVLEKYKNSTYNLD-----FNTFSTNIFI 239

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G  +++   L G++Q  N L A  +   +GID  ++ E ++K+ V   RFE     S+ 
Sbjct: 240 NGNKYEY--SLFGDYQYKNFLCAYEVVKYLGIDENIIKEAVKKV-VWQCRFEVY---SKN 293

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  D AH    +E + K ++   +   + V+     D+D   R  M +   +++   I
Sbjct: 294 PLVIFDGAHNLAGVEELTKIVKQHFSKDEVTVLVSILKDKD---RVSMFRKLNEISSCII 350

Query: 415 VTD--DNPRS 422
           +T   DNPR+
Sbjct: 351 LTSIPDNPRA 360


>gi|227875252|ref|ZP_03993394.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844157|gb|EEJ54324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
          Length = 480

 Score = 43.5 bits (101), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS---LQDFSATIRSN 89
           V++DSR I+AG +FVA+ G   DGH F+     +G +  VV+        QD++      
Sbjct: 25  VNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVAVVTKNRDEILAQDWATEEELG 84

Query: 90  TPILV-VDNTRKFLSLFA----------SRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             IL+ VD+ +  L   A          +R      + ++ +TG++GK++     +Q+  
Sbjct: 85  KLILLQVDDAQIALGKIAQAHLEQLRSRARNGSGKLKLVIGITGSAGKTTTKDLARQLLS 144

Query: 139 RSG 141
             G
Sbjct: 145 AKG 147


>gi|222151005|ref|YP_002560158.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
 gi|254766053|sp|B9EB51|MURD_MACCJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222120127|dbj|BAH17462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
          Length = 445

 Score = 43.5 bits (101), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 40/258 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +IL +TGT+GK++V S +  + +    +    G    ++S    N     +   L   LS
Sbjct: 112 SILGITGTNGKTTVTSLIGDMFKAHEHAGLLCGNIGFVASKVAQNAGAHDT---LVMELS 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G+     E   H         I LI    TN+   H+DYH  QQ Y +AKM++ +
Sbjct: 169 SFQLMGIQ----EFRPH---------IALI----TNIYSAHLDYHGNQQNYIDAKMQITK 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQV 291
               ++   +I+ D    +  + + +N   +V+        +G +I   KV   +   + 
Sbjct: 212 NQTSED--YLIFND---KQRTLLQNYNIKSKVVYFSTDEKVEGAYIDQNKV---YFYDEF 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I V  KD      LPG   + N L +       GID+  + + L+    +  R +FV T
Sbjct: 264 IIDV--KD----IVLPGVHNLENVLASIAAAKLAGIDNIHICDTLKTFEGIKHRLQFV-T 316

Query: 352 NSRGGRIYVDYAHTSNSL 369
            + G + Y D +  +N+L
Sbjct: 317 ETDGVKYYND-SKATNTL 333


>gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 776

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 11/183 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ T +    A  R F   +  +  A++     Y  E+++R      R + 
Sbjct: 183 TNVEDDHMDHYGTMEKIIEA-FRTFISQIDADGTAVL----CYENEILRRLGAETDRTV- 236

Query: 270 VGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAI 325
           V Y        +   I     V   T+   G     +   +PG   V NAL    +    
Sbjct: 237 VSYAIDAAADYRAADIETCGSVISFTVFERGTALGRISLHIPGRHNVLNALACVAVARLA 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D   + + L   H    RF+  G   RG  +  DYAH    +   L   R    GR++
Sbjct: 297 GLDFDRIADALAHFHGAKRRFQTKG-KERGIWVVDDYAHHPTEIAATLAAARQTEPGRLV 355

Query: 386 VVF 388
            VF
Sbjct: 356 CVF 358


>gi|13471548|ref|NP_103114.1| UDP-N-acetylmuramate--L-alanine ligase [Mesorhizobium loti
           MAFF303099]
 gi|23821883|sp|Q98KB4|MURC_RHILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|14022290|dbj|BAB48900.1| UDP-N-acetylmuramate-alanine ligase [Mesorhizobium loti MAFF303099]
          Length = 466

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   V NA  A  +   +G+    + + L     V  RF   G+ + G  ++ DY 
Sbjct: 280 LPMPGRHNVSNATAAIAVAHELGLSGEAIKKGLSSFAGVKRRFTHTGSWN-GVDVFDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R+ T GR+I +
Sbjct: 339 HHPVEISAVLKAARSATKGRVIAI 362


>gi|319946061|ref|ZP_08020310.1| dihydrofolate:folylpolyglutamate synthetase [Streptococcus
           australis ATCC 700641]
 gi|319747869|gb|EFW00114.1| dihydrofolate:folylpolyglutamate synthetase [Streptococcus
           australis ATCC 700641]
          Length = 415

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 140/358 (39%), Gaps = 77/358 (21%)

Query: 106 ASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL- 162
           A +L G+  E +  + VTGT+GK S  +F++Q+ Q+ GL   ++G  ++    +  +R+ 
Sbjct: 26  AVKLLGEPHEAVPMIHVTGTNGKGSTIAFMRQLFQQHGL---KVGTFTSPHIVSMHDRIC 82

Query: 163 ------TTPSPIYLAK-------------------------ALSYLSSQGVTHVSVEASS 191
                 +    I L +                         A  Y   Q V    +E   
Sbjct: 83  INGQPISDQDLIRLGQSIQAMESQLLETHDQLSYFEIITLLAFLYFHEQKVDLALIEVGI 142

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            GL    LD   +I G    +    +D+ +T      A       +     PA+I     
Sbjct: 143 GGL----LDTTNVITGEVAVITSVGLDHQETLGGRLEAIATQKAGIFKAGKPAVI---GP 195

Query: 252 YSKEV----MKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFL-FP 305
            +KEV     ++A   GC +    Y+  F  +K V    H++           FD L   
Sbjct: 196 LAKEVEQVCTEKAQAIGCSLAR--YREDFQLVKGVFQDAHHR-----------FDSLKIG 242

Query: 306 LPGEFQVYNALVAAGLCI------AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           L G +Q  NA VA    +       + +D   V E L+     PGR E  G       +Y
Sbjct: 243 LKGAYQEENAAVALEAFLLFMEQRGLAVDENSVREALQATSW-PGRLENFGQG-----VY 296

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVT 416
           +D AH  +++  +++  RT +  R+ ++FG    +D QG   I  +  L  AD+ + T
Sbjct: 297 LDGAHNPHAIHRLVEYARTFSDKRVKILFGALKRKDYQGMLEIFSR-DLPEADLTVTT 353


>gi|289522905|ref|ZP_06439759.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503929|gb|EFD25093.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 485

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 5/181 (2%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH++++ T Q+  +A +R   +    +   II  +D   + V  +     C    
Sbjct: 193 TNIDWDHVNFYPTFQSVQDAFVRFLSKR-KDDGKIIICGEDTGCQSVAGK-FAPQCITYG 250

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G Q  +  +    ++      T+   G +  +    + GE  V NAL A  +C  +GI 
Sbjct: 251 WGMQWDWGAVGVNHSVGGGVSFTVVKRGAEIGEINLRVSGEHNVLNALAACAVCDLLGIS 310

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVV 387
              +   L K      R + +G        Y DY H    ++  L  +R I  S R++V+
Sbjct: 311 FNTIRHALHKFKGTKRRLQCLGV-CDDIYFYDDYGHHPREVQATLDTLRNIFPSRRLVVI 369

Query: 388 F 388
           F
Sbjct: 370 F 370


>gi|271502044|ref|YP_003335070.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
 gi|270345599|gb|ACZ78364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
          Length = 437

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 104/256 (40%), Gaps = 44/256 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V Q+   +G   + +G    I                   AL  
Sbjct: 106 IVAITGSNGKSTVTTLVGQMAHAAG---WAVGVGGNIG----------------VPALEL 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      +   A +  N+  DH + Y    Q Y  AK+R++E
Sbjct: 147 LKQESQLYV-LELSSFQLETTH--SLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    I+ ADDA +  V      A  R LS G      HL       N+QQ    +
Sbjct: 204 ----NAKVCIVNADDALTMPV----RGADARCLSFGVDVGDYHL-------NRQQGETWL 248

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             K    L      L G+    NAL A  L  A+GI  +  L  L     +P RF+   +
Sbjct: 249 RVKGERVLNTREIKLVGQHNYTNALAALALADAVGIPRSSALTALTTFTGLPHRFQL--S 306

Query: 352 NSRGGRIYVDYAHTSN 367
             R G  +V+ +  +N
Sbjct: 307 LERNGVRWVNDSKATN 322


>gi|257466677|ref|ZP_05630988.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917830|ref|ZP_07914070.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691705|gb|EFS28540.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 447

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH++ H   +       R F E    E   ++  D A  + V   + N       
Sbjct: 173 TNIEEDHLETHGNLEN-IEKSFRQFVE--QTERKVLVCTDCANVRAVF--SENEKIMTYG 227

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGID 328
           + Y+   I  K V  ++ K    + ++G++   F   +PG+  + N+L      +  G+ 
Sbjct: 228 MDYEAN-IMAKNVEIVNGKTSFEVLIQGENQGRFYISIPGKHNILNSLPVIYFSLLFGVP 286

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              + + L        R++ +  +    R I  DYAH    ++  LK +++I  G+II +
Sbjct: 287 KEEIQDKLLHFRGSKRRYDVLYWDQENNRKIIDDYAHHPTEIQATLKGVKSIEKGKIIGI 346

Query: 388 F 388
           F
Sbjct: 347 F 347


>gi|329895275|ref|ZP_08270917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
 gi|328922397|gb|EGG29740.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
          Length = 449

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSRH+Q+G +FVA  G+K DGH ++  A A+GA A +V     ++     IR  
Sbjct: 25  IQGLNFDSRHVQSGDLFVAFKGDKADGHDYVEAARARGAVAALVERWVPVE--ITQIR-- 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                V++    L+ +A  +        + +TG++GK++V S V  I    G +S   G
Sbjct: 81  -----VEDCLSALAEWAKSVRQSSAATFVGITGSAGKTTVKSTVAHILSAQGATSATQG 134


>gi|121595965|ref|YP_987861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
 gi|120608045|gb|ABM43785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
          Length = 482

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 142/369 (38%), Gaps = 27/369 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +D+R + AG +FVA+ G + D H F+ Q           + A +    +    +  P + 
Sbjct: 42  TDTRTLAAGDLFVALKGERFDAHQFLSQ--------ARRAGAAAAIAHAGLADAGLPGIE 93

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-SGLSSFQIGPTSTI 153
           V +T   L   A+    +    ++AVTG++GK++V   +  + +   G ++      +T 
Sbjct: 94  VPDTLAALGALAAGWRAQRDLPLIAVTGSNGKTTVTQMIAAVLRAWKGDAAL-----ATQ 148

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
            +F  D  +    P+ L   L          V +  +  G   +  D  +       N  
Sbjct: 149 GNFNNDVGV----PLTL---LRLRPGHEAAVVELGMNHPGEIANLADIARPTVALVNNAQ 201

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           R+H+++  T +A       +    LP +  A+  A DA++    + A    C  L+ G  
Sbjct: 202 REHLEFMHTVEAVARENGSVLSA-LPADGTAVFPAADAFTPLWRELAGTRHC--LTFGET 258

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +            QV I      FD    + G   V NAL A    +A G+  A + 
Sbjct: 259 AGEVRCAAAQWGGGAWQVRIDTPNGAFDTRLAIAGRHNVTNALAATACALAAGVPLASIA 318

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           + L     V GR   +     G  I V    Y    +S+   ++ +  +   R++V+   
Sbjct: 319 QGLAAFAPVNGRSRALAVRCGGRSITVVDDSYNANPDSVHAAIEVLAALPGPRLLVLGDM 378

Query: 391 GGDRDQGKR 399
           G   DQG +
Sbjct: 379 GEVGDQGPQ 387


>gi|90580815|ref|ZP_01236618.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
 gi|90438083|gb|EAS63271.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
          Length = 462

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PL G+  V NAL+A      +G+   L  E L K      R E  G  S G  +Y D+A
Sbjct: 285 WPLVGDHNVNNALMAIAAARHVGVKPELACEALAKFINTKRRLELKGEVS-GVTVYDDFA 343

Query: 364 HTSNSLEMILKNIRT-ITSGRIIVVF 388
           H   ++E+ L  +R  +   RI+ V 
Sbjct: 344 HHPTAIELTLGGLRAKVNQSRILAVL 369


>gi|282600178|ref|ZP_05973287.2| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
 gi|282566125|gb|EFB71660.1| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
          Length = 472

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 130/339 (38%), Gaps = 52/339 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A  +VVS+A S+ +          I V+        L   R +G      +AV GT G
Sbjct: 62  ENASVVVVSTAISMDNPEIQAAKELRIPVIRRAEMLAELMRYR-HG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I  ++GL                        P ++   L  + S G TH 
Sbjct: 115 KTTTTAMISGIYAQAGL-----------------------DPTFVNGGL--VKSAG-THA 148

Query: 186 SVEASSHGL---DQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            + +S + +   D+     + L  +    TN+  DH+D +Q            F   LP 
Sbjct: 149 RLGSSRYLIAEADESDASFLHLQPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPF 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-K 298
              A++  DD   + ++ +    G  + + G+ +   + + K     N+   TI+ EG  
Sbjct: 209 YGRAVMCIDDPVIRSLLPK---IGRYITTYGFSEDADVRITKYTQKGNQGFFTIAREGMP 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT------N 352
           +   +   PG     NA  A  +    GID   +L  L +      RF+F+G       N
Sbjct: 266 ELTVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNYALRNVN 325

Query: 353 SRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            + G + +  DY H    ++  +K  R      RI+++F
Sbjct: 326 GKEGEVMLVDDYGHHPTEVDATIKAARAGWPDKRIVMIF 364


>gi|297243802|ref|ZP_06927732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
 gi|296888223|gb|EFH26965.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
          Length = 533

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 35/159 (22%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +    GL++  +G                     + K+
Sbjct: 123 PAYWIGITGTNGKTSTTEMTSAMLTTCGLNAPAVG--------------------NIGKS 162

Query: 174 LSYLSSQGVTH--VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +S+ + +   H  + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K 
Sbjct: 163 VSHAALE-CEHDALCVELSSFQL--HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKS 219

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCR 266
           ++F  +      A++Y  +A  + V K A  A    GC+
Sbjct: 220 KVFNNV----QKALVY--NAQDERVSKLADCAQVADGCK 252


>gi|237708647|ref|ZP_04539128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|265755303|ref|ZP_06090073.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
 gi|229457347|gb|EEO63068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|263234445|gb|EEZ20035.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 149/360 (41%), Gaps = 26/360 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV      ++++A    +  
Sbjct: 15  KVTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDE----KEYAAD--GHPR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           IL+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G   
Sbjct: 69  ILLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L       +  + + A+  G  +     ++   G  TN
Sbjct: 128 -------NNHIGVPLTL-----LRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L+E L       I    D      + +     C  +  G
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGMEGG 235

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +G +I   K+ A           EG+ F+    L G + + NAL A  +     + S  
Sbjct: 236 -EGLYIS-GKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQ 293

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFG 389
           + E LE    VP       T +   ++ VD A+ +N   M+  L+N R +     +V+ G
Sbjct: 294 ICEALEA--YVPHNNRSQLTETTDNKLIVD-AYNANPTSMMAALENFRLMNVAHKMVILG 350


>gi|227889742|ref|ZP_04007547.1| possible tetrahydrofolate synthase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849606|gb|EEJ59692.1| possible tetrahydrofolate synthase [Lactobacillus johnsonii ATCC
           33200]
          Length = 421

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 20/168 (11%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           L PL   + +  A+ A  L + + +D   + E + + H+ PGR++ + T+     I VD 
Sbjct: 251 LRPLVEAYDIGVAVQAIQL-LQLDLDRKKIEEAINETHI-PGRYDVIQTSPE---IIVDG 305

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   ++E +L  +R    G+I V+ G   D+D G  P+  K+  D   + +   D PR+
Sbjct: 306 AHNLQAMENLLNLVRKKKKGQIYVLLGMMKDKDLG--PVT-KLFKD-EKVTLTRIDYPRA 361

Query: 423 ---ED-PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              ED P++ + E       F  K N  EA  +    L   D+L+V G
Sbjct: 362 ARLEDFPKEAQKE-------FEYKENFEEAYTSLKNKLQADDMLLVTG 402


>gi|167626976|ref|YP_001677476.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|189028990|sp|B0TW67|MURC_FRAP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167596977|gb|ABZ86975.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 120/308 (38%), Gaps = 51/308 (16%)

Query: 75  SAYSLQDFSATIRSNTPILV------VDNTRK--FLSLFASRLYGKHPENILAVTGTSGK 126
           S Y +  +S+ I  N P+L       V   ++  FL+L       K     +AVTGT GK
Sbjct: 60  SGYDMVVYSSAILDNHPLLSKARVLGVQCLKRAMFLALLM-----KDFRYSIAVTGTHGK 114

Query: 127 SSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ +S +  + C+    +SF +G    +  +A  N                +   G   +
Sbjct: 115 TTTSSILATLLCKLDTTNSFVVG---GVVKYADSN----------------IQINGTDRL 155

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +EA         L+    I    TN+  DH+    T +  ++  +  F   L KES   
Sbjct: 156 VIEADESDASFLYLNPNVAIV---TNIDLDHM---STYKNSYDNLLENFANFLMKESIEN 209

Query: 246 IY--ADDAYSKEVMK--RAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGK 298
           IY   DD    +++   R+   G  ++S G+       I+  +V    N    T+  +  
Sbjct: 210 IYLCVDDHGCNDLLDKYRSRVVG-NIVSYGFAINSDARIYNYRVS--DNLTTFTVEYKSG 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +DF   LPG++ V NA      C+ +G     +   L  +  V  RF+         +I
Sbjct: 267 KYDFELQLPGKYNVQNATACVVACLDLGFSYKDIYNALATVKGVARRFDVYDKQISSHKI 326

Query: 359 YV--DYAH 364
            V  DY H
Sbjct: 327 PVIDDYGH 334


>gi|150003104|ref|YP_001297848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294775869|ref|ZP_06741368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
 gi|149931528|gb|ABR38226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294450238|gb|EFG18739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 149/360 (41%), Gaps = 26/360 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV      ++++A    +  
Sbjct: 15  KVTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDE----KEYAAD--GHPR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           IL+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G   
Sbjct: 69  ILLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L       +  + + A+  G  +     ++   G  TN
Sbjct: 128 -------NNHIGVPLTL-----LRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L+E L       I    D      + +     C  +  G
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGMEGG 235

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +G +I   K+ A           EG+ F+    L G + + NAL A  +     + S  
Sbjct: 236 -EGLYIS-GKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQ 293

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFG 389
           + E LE    VP       T +   ++ VD A+ +N   M+  L+N R +     +V+ G
Sbjct: 294 ICEALEA--YVPHNNRSQLTETTDNKLIVD-AYNANPTSMMAALENFRLMNVAHKMVILG 350


>gi|84622537|ref|YP_449909.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|122879059|ref|YP_199603.6| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366477|dbj|BAE67635.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 134/346 (38%), Gaps = 55/346 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           + P  I+  A  +VV +A S        R N  +  V+D  R++ S    L    L G+ 
Sbjct: 54  YAPSNISPDATDVVVGNALS--------RGNPAVEAVLDAGRRYTSGAQWLAEQVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             + LAV GT GK++  + +  + + +G +  F IG     + F    RL          
Sbjct: 105 --DTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIG--GVAADFGVSARL---------- 150

Query: 173 ALSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                  QG   V VEA  +       + +    + +     NL  DH D          
Sbjct: 151 ------GQGREFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPD----VA 199

Query: 229 AKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVC 283
           A  R F  L+   P     I+  +DA+  EV+      GC   V   G+        ++ 
Sbjct: 200 AIQRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTSVEQFGFDASLDWSARLI 255

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           A        +    +     +PL G   V N L A     A+G+D A V+  L     V 
Sbjct: 256 AADGSAFAVLHRGAEVGHVQWPLLGRHNVLNGLAALAAVHAVGVDPATVMPALAHFQSVK 315

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            R E +G+ +RG  +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 316 RRLEVIGS-ARGITVYDDFAHHPTAIATTLQGLRARVGAARVVVAM 360


>gi|331092522|ref|ZP_08341344.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400743|gb|EGG80346.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 461

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 132/340 (38%), Gaps = 79/340 (23%)

Query: 64  IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---L 118
           I  G + +V ++A     ++F+  +R N P+L             + L G+   N    +
Sbjct: 66  IIDGIDVVVYTAAIHEDNEEFAEAVRQNIPMLS-----------RAELLGQLMTNYECPI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALS 175
           AV+GT GK++  S +  +     L   +  PT ++    +    N     S +++ +A  
Sbjct: 115 AVSGTHGKTTTTSMLSHV-----LLEGEKDPTISVGGILKAINGNIRVGNSGVFVTEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S                 H L  I +I     N+  DH+D+ +       +  R F 
Sbjct: 170 YTNSF---------------LHFLPKISIIL----NVEEDHMDFFKDIDDIRQSFHR-FA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +LLP+     +  +    K +        CRVL+ G  G + +  K  + +N+   T   
Sbjct: 210 QLLPQNEEGTLIINGEIEK-IEAITDGLTCRVLTYGLHGDYDYSAKNIS-YNETGCT--- 264

Query: 296 EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
               FDF             + GE  V NAL A    IA+G  + + LE ++K     G 
Sbjct: 265 ---SFDFYRFGEFADRISLSVTGEHNVSNALSA----IAVGELTNVPLESIKK-----GL 312

Query: 346 FEFVGTNSR--------GGRIYVDYAHTSNSLEMILKNIR 377
             F GT+ R        G  I  DYAH    +   L +++
Sbjct: 313 LSFSGTDRRFEYKGELNGFTIIDDYAHHPTEITATLSSVK 352


>gi|296332043|ref|ZP_06874507.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675562|ref|YP_003867234.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150814|gb|EFG91699.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413806|gb|ADM38925.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 103/284 (36%), Gaps = 60/284 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + Q +  +SF IG  +      Q N                 
Sbjct: 104 VAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGDGT-----GQGNE---------------- 142

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S+     + E   H L       I       TN+  DH DY  +    F+A    F+E+
Sbjct: 143 NSEYFVFEACEYRRHFLSYQPDYAI------MTNIDFDHPDYFSSIDDVFDA----FQEM 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             + +  II   D    E + + H N        G +  F            + +  S E
Sbjct: 193 ALQVNKGIIACGD---DEHLPKIHANVPVVYYGTGEENDF----------QARNIVKSTE 239

Query: 297 GKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           G  FD          F  P  G   V N+L    LC    IDS+++   L+    V  RF
Sbjct: 240 GTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRF 299

Query: 347 EFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVF 388
                   G ++ + DYAH    +++ ++  R     R I+ VF
Sbjct: 300 ---NEKQLGDQVLIDDYAHHPTEIKVTIEAARQKYPDREIVAVF 340


>gi|282896417|ref|ZP_06304438.1| Cyanophycin synthetase [Raphidiopsis brookii D9]
 gi|281198705|gb|EFA73585.1| Cyanophycin synthetase [Raphidiopsis brookii D9]
          Length = 860

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S + +   +R  TSG+ I V G  GDR       +GK+A ++ D  IV +D+
Sbjct: 718 VDYAHNPASYQALGSFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDD 777

Query: 420 PRSEDPEKIRAEIIHGIPGFIE-KGN-RIEAIRTAIEMLNK 458
                P    +++I  I G  + K N R E+I    + +NK
Sbjct: 778 DTRGRPRGSGSDLI--IQGITQTKANCRYESILDETQAINK 816


>gi|160915064|ref|ZP_02077277.1| hypothetical protein EUBDOL_01072 [Eubacterium dolichum DSM 3991]
 gi|158432863|gb|EDP11152.1| hypothetical protein EUBDOL_01072 [Eubacterium dolichum DSM 3991]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 108/259 (41%), Gaps = 24/259 (9%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAGCRV 267
            TN+  DH+DY++    Y +A    FE    +    I+ + DDA       R+     + 
Sbjct: 168 LTNIELDHVDYYKDLADYCDA----FEAFANQVKKGIVMFGDDANV-----RSLKVTTKH 218

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIA 324
           L  G +     ++ V  I N+  ++  V  ++     F  P  G+  ++N+L    L I 
Sbjct: 219 LYYGLEED-NDVRAVNVIQNENGMSFDVIYQNTVFGSFKLPFVGKPLLWNSLGVIALGIM 277

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR 383
            G+ + ++ E L     V  RF         G +Y+ DYAH   +++ +++  RT    R
Sbjct: 278 EGLSAQILQEGLASFPGVKRRFT---IEENHGNVYIDDYAHHPTAVQYMIEAARTKYPNR 334

Query: 384 -IIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            II +F    DR       M +   AL+LAD   + +    +   E I    I  +   I
Sbjct: 335 KIIALF--KPDRYSRIYYFMDRFAQALNLADEVFLCNFPENAAKEEGIDI-TIQDLADKI 391

Query: 441 EKGNRIEAIRTAIEMLNKQ 459
           EK   IE    A  ML K+
Sbjct: 392 EKAVVIEEDEAAARMLAKR 410


>gi|148240320|ref|YP_001225707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7803]
 gi|147848859|emb|CAK24410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 7803]
          Length = 463

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 110/289 (38%), Gaps = 43/289 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAK 172
           + +TGT+GK++V   +Q +   +GL +   G    +   A +  L     T P P ++  
Sbjct: 113 IGITGTNGKTTVTHLLQHVLAHAGLEAPMAG---NVGHSAAELALEVLQGTRPKPDWVVM 169

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +S    +    VS                    G +T L  DH++ H T  AY   K  
Sbjct: 170 EMSSYQIEAAGEVSPR-----------------IGIWTTLTPDHLERHGTLAAYRAIKRG 212

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQ 289
           L E     E+P ++ ADDA  ++        G R +S    G     IH   V    N Q
Sbjct: 213 LLER---AETP-VLNADDADIRQHCGAWSRPGLRWVSGADDGPDKDSIHRISV----NAQ 264

Query: 290 QVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                 E   F     PLPG+    N L+A    +   + ++ +   L     VP R E 
Sbjct: 265 GWVSQGERPLFPADALPLPGDHNRQNMLLATAAALEASVSASSIEAALRCFTGVPHRLEP 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +G+    G I V     + + +     +R++ +    VV   GG   QG
Sbjct: 325 LGSV---GGIPVFNDSKATNYDAAAVGLRSVQA---PVVLLAGGQTKQG 367


>gi|85058425|ref|YP_454127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sodalis
           glossinidius str. 'morsitans']
 gi|122063259|sp|Q2NVV3|MURD_SODGM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|84778945|dbj|BAE73722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 438

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 52/285 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V   V ++   +G   +Q+G    I   A    L +P  +Y+      
Sbjct: 107 VVAITGSNGKSTVTCMVGEMAAAAG---WQVGVGGNIGLPAL-TLLDSPCQLYV------ 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  L+      +K  A +  N+  DH++ Y    Q Y  AK++++ 
Sbjct: 157 ----------LELSSFQLETTH--SLKAAAATVLNISEDHMNRYPLGLQQYRAAKLKIYH 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS- 294
           +     +  ++ A+DA +  V  R H+A C  +S G +     L++    H  Q   ++ 
Sbjct: 205 D----AAVCVVNAEDALTLPV--RGHDARC--ISFGAERGDYCLRR----HAGQTWLMAR 252

Query: 295 ----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +EG +      + G     NAL A  L  A+GI SA  L  L +   +  RFE V 
Sbjct: 253 GEPLLEGAELR----VGGRHNYTNALAALALSDALGIPSAASLAALRQFRGLTHRFELV- 307

Query: 351 TNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGD 393
            + R G  +++ +  +N  S E  L  +  + +  +++    GGD
Sbjct: 308 -HERRGVRWINDSKATNVGSTEAALNGLEVVGTLHLLL----GGD 347


>gi|16080031|ref|NP_390857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310923|ref|ZP_03592770.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315250|ref|ZP_03597055.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320167|ref|ZP_03601461.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324448|ref|ZP_03605742.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3183540|sp|P40778|MURC_BACSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2293216|gb|AAC00294.1| putative UDP-N-acetylmuramate-alanine ligase [Bacillus subtilis]
 gi|2635463|emb|CAB14957.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485412|dbj|BAI86487.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 103/284 (36%), Gaps = 60/284 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + Q +  +SF IG  +      Q N                 
Sbjct: 104 VAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGDGT-----GQGNE---------------- 142

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S+     + E   H L       I       TN+  DH DY  +    F+A    F+E+
Sbjct: 143 NSEYFVFEACEYRRHFLSYQPDYAI------MTNIDFDHPDYFSSIDDVFDA----FQEM 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             + +  II   D    E + + H N        G +  F            + +  S E
Sbjct: 193 ALQVNKGIIACGD---DEHLPKIHANVPVVYYGTGEENDF----------QARNIVKSTE 239

Query: 297 GKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           G  FD          F  P  G   V N+L    LC    IDS+++   L+    V  RF
Sbjct: 240 GTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRF 299

Query: 347 EFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVF 388
                   G ++ + DYAH    +++ ++  R     R I+ VF
Sbjct: 300 ---NEKQLGDQVLIDDYAHHPTEIKVTIEAARQKYPDREIVAVF 340


>gi|300741263|ref|ZP_07071284.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|311113338|ref|YP_003984560.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380448|gb|EFJ77010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|310944832|gb|ADP41126.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 533

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 20/125 (16%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     L +TGT+GK++    V  I + +G  S Q+G             +  P+   +
Sbjct: 159 GRVTPKWLCLTGTNGKTTTVGMVDSILKAAGKKSLQVG------------NVGMPAVYAV 206

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           A    Y         +VE SS  L  H    +   A    N+  DH+D+H + +AY   K
Sbjct: 207 ADDEPY------EFFAVELSSFQL--HWTSSLSPYASVVLNVAEDHVDWHGSFEAYKADK 258

Query: 231 MRLFE 235
            R++E
Sbjct: 259 ARVYE 263


>gi|224368382|ref|YP_002602545.1| MurD [Desulfobacterium autotrophicum HRM2]
 gi|223691098|gb|ACN14381.1| MurD [Desulfobacterium autotrophicum HRM2]
          Length = 458

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 20/118 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GK++V + V ++ +RSGLS F  G             + TP   +L      
Sbjct: 119 LVAITGTNGKTTVTTLVSEMLKRSGLSVFTGG------------NIGTPLVEFLE----- 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            S Q    V  E SS  LD   +   ++      N+  DH+D +    AY ++K  L 
Sbjct: 162 -SGQTEDVVVAEVSSFQLDAATMFAPRVAV--LLNIAEDHMDRYTAFSAYADSKWALL 216


>gi|216263492|ref|ZP_03435487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
 gi|215980336|gb|EEC21157.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
          Length = 449

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 43/299 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q  ++      ++G    +S  +  ++
Sbjct: 100 ISLFL--IFNKNP--IIAVTGTKGKSTLVSLLYQALKKK-YPRVKLGGNIGVSPLSFFDQ 154

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 155 LDGKSPLIL-----------------ELSSWQL--QSLENFNPILSIITNVYNDHQNYYS 195

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
               Y   K ++F   + + S  +I  D AY K   K    A   + S   +    +L +
Sbjct: 196 NFDDYIIDKSKIF---VNQTSGIVIIQDKAYYKYFSKFESKAKVILFS---EFNPCNLDQ 249

Query: 282 VCAIHNKQQVTI--SVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                NK +V    ++ G  F+   +F +P        L+A  +   + ID   + + L+
Sbjct: 250 DIFYSNKGEVYFNDNLIGSFFESQVVFMIP-------KLIAFFVAYYLNIDLNHMFQILK 302

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
               +  R EFV    R    Y D A T  +S  + +K+++T  +   ++V G   + D
Sbjct: 303 NFKGIEHRLEFVKL-VRNVMFYNDTASTIPDSTVLSVKSLKTNDNCINLIVGGTDKNLD 360


>gi|39936591|ref|NP_948867.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           CGA009]
 gi|48428302|sp|P61682|MURC_RHOPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39650447|emb|CAE28970.1| UDP-N-acetylmuramate-alanine ligase [Rhodopseudomonas palustris
           CGA009]
          Length = 467

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 132/337 (39%), Gaps = 54/337 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT
Sbjct: 65  KGADVLVVSTA---------IKRDNPELLAARAQRIPVVRRAEMLAELMRLKSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +     L    I     I+++  + RL                  G  
Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVIN-GGIINAYGTNARLG-----------------GGD 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            + VEA     D+     +KL A     TN+  +H+D+ +T  A  +A  R F E +P  
Sbjct: 158 WMVVEA-----DESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             A++  D    + ++ +  +           A  R+L +   G     K   A  +++ 
Sbjct: 212 GFAVMCIDHPVVQTLVGKIEDRRIITYGENPQADARLLDLAASGGGSTFK--VAFRDRKA 269

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T     +  D   P+PG     NA  A  +   +G+    + + L     V  RF   G
Sbjct: 270 GTAH---EIADLKLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               G  I  DY H    +  +LK  R  T+G++I V
Sbjct: 327 -EWNGVTIIDDYGHHPVEIAAVLKAARQSTAGKVIAV 362


>gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 458

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 181/455 (39%), Gaps = 68/455 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             R R     + DSR +  G +FVAI G   DGH +   A+  GA A++ +   +     
Sbjct: 18  HGRARVTGPATIDSRDVPPGGLFVAIPGEHVDGHAYAEAAVRAGAAAVLCTRPVA----- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                  P ++V +    L L A   + +    + + +TG+SGK+S    +  + +    
Sbjct: 73  ------APHVLVPDATVALGLLARATHDRLDRLSTVGLTGSSGKTSTKDLLAHVLE---- 122

Query: 143 SSFQIGPT-STISSFAQDNRLTTPSPIYLA-KALSYLSSQGVTHVSVEASSHGLDQHRLD 200
               + PT +   SF  +N L  P  +  A  +  YL    V  +      H     R+ 
Sbjct: 123 ---PLAPTVAPTGSF--NNELGVPLTVLRADPSTRYL----VVEMGARGRGHIAALCRIS 173

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
              +      N+G  H     +      AK  L E L P  + A++ ADD     V   A
Sbjct: 174 PPDVAV--VLNVGTAHQGEFGSVDDTAVAKGELVEALGPGGT-AVLNADD---PRVAAMA 227

Query: 261 HNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALV 317
                +VL+ G  G  + + L    A H +  +T++  G D + F+ P  G     NA  
Sbjct: 228 GRTAGQVLTFGRGGDVRLVDLLTDAAGHPR--ITLA-HGPDRETFVLPQIGGHHGSNAAA 284

Query: 318 AAGLCIAIGIDSALVLEHLEKLHV-VPGRF-EFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            A + +A+G+D A V   L    V  P R    V  +   G + VD ++ +N  E +   
Sbjct: 285 TAAVAVALGVDLATVAARLATATVRSPHRMARHVRPD---GLVVVDDSYNANP-ESVAAA 340

Query: 376 IRTIT-------SGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +R++         GR +VV G     G D     R I G +A +L  I +V    P +  
Sbjct: 341 LRSVADLGAPGDGGRTVVVLGEMLELGADSADHHRRI-GALARELG-IGLVVAVGPGASP 398

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             +    +  G+P           +  A+E+L++Q
Sbjct: 399 VVEGAGALATGVPD----------VAAAVELLHEQ 423


>gi|157363500|ref|YP_001470267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
 gi|167017289|sp|A8F4W9|MURD_THELT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157314104|gb|ABV33203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
          Length = 430

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 147/364 (40%), Gaps = 68/364 (18%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++AVTG++GK++    +  + Q+ GL S+  G             + TP+   L   
Sbjct: 97  PNFVIAVTGSNGKTTSCKLLSFVFQKLGLDSYACG------------NIGTPAADVLGFK 144

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             YL         +E SS  L   ++  I +  G   N+  +H+D+H + + Y  +K++L
Sbjct: 145 TKYL--------VLEISSFQLFWSKMLHIDI--GVVLNIQPNHLDWHPSLEHYAKSKLKL 194

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIH----NK 288
            E      S   IY  +   + +M                 KFI  K  +CA       K
Sbjct: 195 LE-----FSKTGIY--NCSDQNIM-----------------KFISEKSNLCAFDPLKIRK 230

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               I  EGK + F        Q    L A   +   +  D   VLE LE    +  R E
Sbjct: 231 VDDGIVYEGKYYTFKNDFLKTHQNLQNLSAILKIFSVMNFDLKQVLEILEDFKPLKHRME 290

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           FV  +   G ++++ +  ++S   I  L+N  +    R +++   G  +++    ++ +I
Sbjct: 291 FV--DEINGVVFLNDSKATSSAATISALENFNS----RNVILLLAGRGKNEDYADLIAQI 344

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 + +        E  E +R E+ +  IP  I + N   A+  A E+  K DV+++
Sbjct: 345 KRKAKHVIVF------GEMVELLRDELKLSDIPYTISE-NMQNAVLKAFEISEKGDVVLL 397

Query: 465 AGKG 468
           +  G
Sbjct: 398 SPAG 401


>gi|296313578|ref|ZP_06863519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839879|gb|EFH23817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L + A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|229524389|ref|ZP_04413794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
 gi|229337970|gb|EEO02987.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
          Length = 467

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 27/144 (18%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 127 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 173

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 174 ------ALDLISPDVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 224

Query: 227 FNAKMRLFEELLPKESPAIIYADD 250
             AK+R+F+        A++ ADD
Sbjct: 225 RQAKLRIFDH----AETAVVNADD 244


>gi|172040889|ref|YP_001800603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852193|emb|CAQ05169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 500

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 44/260 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIRS-- 88
           V  DSR +  G IF+A+ G   DGH ++  A  QGA   +V     Y      A+ R+  
Sbjct: 31  VEFDSRKVAPGSIFMALPGATVDGHDYVAAAGEQGAALAIVGRPVGYPALLAPASERAEG 90

Query: 89  --NTPILVVDNTRKFLSLFAS-RLYGKHPENILA---------VTGTSGKSSVASFVQQI 136
             N+ +   D      ++ A+     +H  ++LA         VTG++GK+S    +  +
Sbjct: 91  TDNSAVFGADEEGYGAAVLAAVDKLARHNTDVLADEEGMVVVGVTGSAGKTSTKDLIGAL 150

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVEASS 191
               G +   + P  +      +N +  P     A       +S +S++GV H++     
Sbjct: 151 LGDLGET---VAPPGSF-----NNEIGLPYTALRASRGTKFLVSEMSARGVGHIA----- 197

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYAD 249
                H         G   N+G  H+    +++A   AK  L E L   E    AI+ AD
Sbjct: 198 -----HLTTVTPPKIGVELNVGSAHLGEFGSREAIAQAKGELVEALPAAEDGGIAILNAD 252

Query: 250 DAYSKEVMKRAHNAGCRVLS 269
           D     V+   H    RV++
Sbjct: 253 D---DAVIAMRHRTRARVVT 269


>gi|308388618|gb|ADO30938.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130842|gb|EGC53575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis OX99.30304]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L + A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|163732131|ref|ZP_02139577.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
 gi|161394429|gb|EDQ18752.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG+  V NAL A  +   +G+ + ++   L     V  RF  VG    G  I  
Sbjct: 277 DCSLPMPGDHNVSNALSAIAVARHLGMKAEVIKTALAAFGGVNRRFTRVGEID-GVTIID 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    +  +LK  R  T GR+I V
Sbjct: 336 DYGHHPVEIAAVLKAARQATEGRVIAV 362


>gi|320537962|ref|ZP_08037869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           phagedenis F0421]
 gi|320145215|gb|EFW36924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           phagedenis F0421]
          Length = 480

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 63/142 (44%), Gaps = 26/142 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ILAVTG+ GKSS  S +Q   Q  G  SF +G   TIS                   L +
Sbjct: 115 ILAVTGSKGKSSTVSALQYGLQGMGFRSF-LGGNITISP------------------LDF 155

Query: 177 LSSQGV-THVSVEASSHGLDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           LS  G  T V +E SS  L   R  G KL+       T +  DH +++ + +AY   K  
Sbjct: 156 LSETGKDTPVVLELSSWQLADLR--GKKLLKPEVAVITPVMPDHQNWYGSMEAYVADKKL 213

Query: 233 LFEELLPKESPAIIYADDAYSK 254
           L+ +  P+E     Y DD + K
Sbjct: 214 LYADQTPEEFCFCNY-DDQWGK 234


>gi|322383208|ref|ZP_08057019.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152477|gb|EFX45263.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 462

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 138/340 (40%), Gaps = 65/340 (19%)

Query: 66  QGAEAIVVSSAY---SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           +GA+ +V S+A    +++  +A  R N PIL   +  + L+   +   G      +AV G
Sbjct: 63  EGADLVVYSTALPKDNVEIVAAEAR-NIPIL---HRSQMLARLMNERKG------IAVAG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
             GK++ +S +  + ++ G     I  G    I S A+                   +  
Sbjct: 113 AHGKTTTSSMIALVMEKCGADPTYIIGGEIMNIGSNAK-------------------AGT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G   V+    S G        + L+     N+  DH++ +      F    + + + L +
Sbjct: 154 GEYVVAEADESDGTFLQYYPTLALV----NNIEADHLENYGGN---FENLKKAYAQFLSQ 206

Query: 241 ESP---AIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQV 291
             P   AI+  DDAY +E++    +    V++ G      YQ   IHL         ++V
Sbjct: 207 VKPGGKAIVCKDDAYIREMIPYVES---EVITYGIGSDADYQAVDIHL-------GDRKV 256

Query: 292 TISV--EGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + SV  +G++   +   +PG+  V NAL    +C+  G+    V   + + H    RF+ 
Sbjct: 257 SFSVLYKGENLGKIELSVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFHGAKRRFQV 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +G       I  DYAH    +   +   +  T  RIIVVF
Sbjct: 317 MG-EINDILIIDDYAHHPTEISATISAAKA-TGKRIIVVF 354


>gi|319411055|emb|CBY91455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alan ine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis WUE 2594]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L + A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLAALQMVAKAWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|257454702|ref|ZP_05619958.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
 gi|257448012|gb|EEV22999.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
          Length = 504

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 135/332 (40%), Gaps = 45/332 (13%)

Query: 68  AEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVSSA  ++  +  A +    P++      +   +    +  +H    +AV G  G
Sbjct: 99  ADVVVVSSAIDHTNPEIQAALSGRIPVV------RRADMLGELMRYRHG---IAVAGAHG 149

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I   +GL      PT  I       +L         K  S   S+ +   
Sbjct: 150 KTTTTSLLTMILTEAGLD-----PTYVIGG-----KLNAS-----GKNASLGQSRYLVAE 194

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+ +  L       ++ +A   TN+ +DH++ +        A    F + +P    A+
Sbjct: 195 ADESDASFL------SLRPMAAIVTNIDQDHMETYGGSFDKLKAAYVQFLQNMPFYGLAV 248

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-- 303
           +  DD   KE+          VL+ G + K   ++ +  + +  +   +V  KD + L  
Sbjct: 249 LCGDD---KELYGLIDKIARPVLTYGLE-KHNDVQAIDVVADGTKTHFTVLRKDREPLPI 304

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRI 358
              +PG   VYNAL A  +    G+    + + ++K   V  RFE  G     +  G  +
Sbjct: 305 TLNIPGIHNVYNALAAITISTDEGVSDEAICQAVKKFAGVGRRFENNGNYPVKDGAGDVL 364

Query: 359 YV-DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
            + DY H    + M +K  R +    R++++F
Sbjct: 365 LIDDYGHHPTEVAMTIKAARQSYPDRRLVMIF 396


>gi|291288107|ref|YP_003504923.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885267|gb|ADD68967.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I     DSR  + G  FVA  G K DG+ +    +  GA  ++V+     +D    I
Sbjct: 21  DQQIRNFVIDSRQSRKGSCFVAFKGEKTDGNRYAEAVLQSGACMVIVTD----EDVYEQI 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             N  +LV D       L A  L G++    +A+TG+ GK++    + ++ +
Sbjct: 77  EGN-KVLVADALYALKDLGAYNL-GRYKGRKIALTGSVGKTTTKELISEVLR 126


>gi|227504691|ref|ZP_03934740.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Corynebacterium
           striatum ATCC 6940]
 gi|227198701|gb|EEI78749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Corynebacterium
           striatum ATCC 6940]
          Length = 479

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           G   NL  DH+D+H +  AY  AK ++      K + A+I  DDA+ +E   +A NAG
Sbjct: 197 GVLLNLADDHLDWHGSFAAYAEAKAKVL-----KGAHAVIGRDDAHVREYADKARNAG 249


>gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 835

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 143/373 (38%), Gaps = 36/373 (9%)

Query: 27  ERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ER I  + +DSR + +    +F A+     DGH +IPQ    G  A  +     ++ +  
Sbjct: 21  ERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLYEHGVRAFFICEP--IEPYVE 78

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               +  I+ V  T + L   AS    ++   ++ +TG++GK+ V  ++  +   SG   
Sbjct: 79  RY-PDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKTVVKEYLYHLL--SGCYR 135

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
               P S       +++L  P  I   +    L+   +    +      L   R+  I+ 
Sbjct: 136 IVRSPKSY------NSQLGVPLSILNMEEEHTLA---IFEAGISMPMEMLRLQRI--IRP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  H +   +       K++LF +       A  +  DA S E+ +   N G
Sbjct: 185 TLGILTNIGAAHQENFVSLNQKIEEKLQLFVD-------ADHFVYDADSDEIQRGIDNLG 237

Query: 265 CRVLSVGYQ---GK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA---LV 317
               ++G+    GK + H+    +      +T     +      P   +  + NA   L 
Sbjct: 238 LSDKAIGWSLTPGKAYYHVSYSHSGDCTTTITAQHADESSTVTIPFADQASIQNATHCLC 297

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL--K 374
             GL          VL     L  +  R E V     G R+  D Y +  NSL + L  +
Sbjct: 298 LIGLLPLTTAQRQAVLARFATLEAIEMRLE-VKEGQAGNRLINDAYNNDINSLRIALDFQ 356

Query: 375 NIRTITSGRIIVV 387
             RT TS +  V+
Sbjct: 357 KQRTATSHQQAVI 369


>gi|224532035|ref|ZP_03672667.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           valaisiana VS116]
 gi|224511500|gb|EEF81906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           valaisiana VS116]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 27/168 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++AS + Q+ ++    + ++G    +S  +  ++
Sbjct: 102 ISLFL--IFNKNP--IIAVTGTKGKSTLASLLYQVLKKKYPRA-KLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGRSPLIL-----------------ELSSWQL--QSLENFNPILSIVTNIYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
               Y   K ++F   + + S  +I  D AY K   K    A   + S
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDKAYYKYFSKFESKAKVILFS 242


>gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36]
 gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36]
          Length = 841

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 142/345 (41%), Gaps = 54/345 (15%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSL------- 79
           I+ + +DSR +      +F A+   + DG  +I    A+G    V+S  ++ L       
Sbjct: 24  IDWLLTDSRSLNFPEETLFFALTTKRNDGARYIADLYARGVRNFVLSEESFRLIEHGELK 83

Query: 80  -----QDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                Q  +   +S+T   L+V N  K L   A +   +    ++ +TG++GK+ V  ++
Sbjct: 84  IDNDAQQPAIHFQSSTVNYLIVSNPLKALQKLAEQHRNRFQIPVIGITGSNGKTVVKEWL 143

Query: 134 QQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEA 189
            Q+          + P   I  S  + ++++  P  ++     S L+    G+       
Sbjct: 144 HQL----------LSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGI------- 186

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY- 247
           S  G  +   + IK   G  TN+G  H      Q+ +F+ + +  E+L L K    +IY 
Sbjct: 187 SEPGEMRALQNIIKPTIGILTNIGGAH------QENFFSLQEKCMEKLMLFKNCDVVIYN 240

Query: 248 ADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLF 304
            DD + S  V K   +A     S     + +++ KV     KQ     IS    D D  F
Sbjct: 241 GDDEFVSNCVAKSMLSAREIAWSRKDMERPLYISKV----EKQDDCTVISYRYLDMDNTF 296

Query: 305 PLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            LP   +  + N+L     C+ + + +  + E + KL  +  R E
Sbjct: 297 TLPFIDDASIENSLNCLAACLYLMLPAERITERMAKLEPIAMRLE 341


>gi|71082732|ref|YP_265451.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|109892719|sp|Q4FPK6|MURC_PELUB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71061845|gb|AAZ20848.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 464

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+ R+H+D++ + +      ++   ++ P    + I  DD  +K+++ +          
Sbjct: 182 TNIDREHMDFYNSMKDLKELFIKFINKV-PSFGKSFICIDDKNNKDLLSKLKMKNYYTYG 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQ--VTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCI 323
              +  F ++K +       Q  + I++ GK          PL G   + N+  A  + +
Sbjct: 241 TDNKSNF-YIKNIKQEKEYSQYDLAINLPGKKNLTIRKIKLPLLGIHNIRNSTAAIAVAV 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            IGI   ++ + L++   V  RF  + T+ R    Y DYAH    +  +L  +R
Sbjct: 300 TIGISQNIIKKGLKEFKGVQRRFNKIFTH-RETNFYDDYAHHPTEIREVLNGVR 352


>gi|326561546|gb|EGE11889.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis 7169]
          Length = 486

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 139/337 (41%), Gaps = 55/337 (16%)

Query: 68  AEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVSSA   Q  +  A ++++ P++      +   +    +  +H    +AV G  G
Sbjct: 83  ADVVVVSSAIDRQNPEIQAALKAHIPVV------RRADMLGELMRYRHG---IAVAGAHG 133

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +   +GL      PT  I       +L          A  YL ++     
Sbjct: 134 KTTTTSLLTMMLTEAGLD-----PTYVIGG-----KLNASGKNAALGASRYLVAE----- 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-----YHQTQQAYFNAKMRLFEELLPK 240
           + E+ +  L       ++ +A   TN+  DH++     + + +QAY       F   +P 
Sbjct: 179 ADESDASFL------SLRPMACVVTNIDEDHMETYEGSFDKLKQAYVQ-----FLHNMPF 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD- 299
              A++  DD   KE+     +    V++ G + K   ++ V  I +  +   +V  KD 
Sbjct: 228 YGLAVLCGDD---KELYAMIDDIARPVITYGLE-KHNDVQAVDVIADGTKTHFTVLRKDK 283

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNS 353
                   +PG   VYNAL A  +    G+    + + +EK   V  RFE  G    T+ 
Sbjct: 284 KPLPITLNIPGIHNVYNALGAITMATDEGVSDKAICQAVEKFAGVGRRFENNGSYPLTDG 343

Query: 354 RGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
            G  + + DY H    + M +K  R +    R++++F
Sbjct: 344 SGDVVLIDDYGHHPTEIAMTIKAARQSYPDRRLVMMF 380


>gi|297564828|ref|YP_003683800.1| FolC bifunctional protein [Meiothermus silvanus DSM 9946]
 gi|296849277|gb|ADH62292.1| FolC bifunctional protein [Meiothermus silvanus DSM 9946]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E +G N     + +D AH       + + ++       +++V     D+D    P 
Sbjct: 280 PGRLERLGEN-----VLLDGAHNPEGAWALRQALKAHFPDKPLVLVLALSKDKDA---PA 331

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           + +   DL  + +    +PRS  P ++RA      PG     N + A++ A+ M+ +  +
Sbjct: 332 IAQALGDLGPVILTRYASPRSRPPAELRAHF----PGARIVENPLPALQKALSMIPRNGL 387

Query: 462 LVVAG 466
           +VVAG
Sbjct: 388 VVVAG 392


>gi|78187951|ref|YP_375994.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
 gi|109892718|sp|Q3B130|MURC_PELLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78167853|gb|ABB24951.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 473

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           H +   TI+  G D+      +PG   + NAL A    + +GI+   ++  L +   +  
Sbjct: 254 HGRATFTITAFGTDYPGVCLNVPGRHNILNALSAFATGLELGIEPERLIAGLGRYSGMRR 313

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           RF+    +SRG  +  DYAH  + ++  +K  R+     R+I VF
Sbjct: 314 RFQVKFRDSRGLMVIDDYAHHPSEVKATVKAARSGWPDARVIAVF 358


>gi|319947393|ref|ZP_08021625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
 gi|319746333|gb|EFV98594.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
          Length = 456

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 74/378 (19%), Positives = 145/378 (38%), Gaps = 54/378 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +  + +   DSR I  G +FV +   + DGH FI  A   GA A +          S
Sbjct: 20  QFEDFDLQKPEFDSRLIGKGDLFVPLKVAR-DGHDFIETAFENGAVATL----------S 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P L+VD+        A  +  K   ++LAVTG++GK++    + Q+       
Sbjct: 69  EKEVEGHPYLLVDDVLGAFQKLAQYVLEKSQVDVLAVTGSNGKTTTKDMLAQLL------ 122

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGI 202
                 ++T  ++         + I L   + ++  +G   + +E    H  D H L  I
Sbjct: 123 ------STTYKTYKTQGNYN--NEIGLPYTVLHM-PEGTEKLVLEMGQDHLGDIHLLSEI 173

Query: 203 KLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD------AYSKE 255
                +   L G  H+++ + +      K+++ +  +P     ++ AD          +E
Sbjct: 174 AHPKAAIVTLIGEAHLEFFKDRTEIAKGKLQIADG-MPAGGLLLVPADPIVEDFLPNQQE 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +++    A  R+  +                 K  +T      +     P+ G++   NA
Sbjct: 233 LVRFGEGADIRITKLD--------------ERKDSLTFEANFLEEAIDLPVTGKYNATNA 278

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           ++A+ + +  G+    +    + L +   R E+    + G  I  D Y     ++ +IL+
Sbjct: 279 MIASYVALKEGVSEEAIRASFKGLELTKNRTEWKKAGN-GADILSDVYNANPTAMRLILE 337

Query: 375 NIRTITS---GRIIVVFG 389
              TI +   GR + V  
Sbjct: 338 TFSTIPANPNGRKLAVLA 355


>gi|111115413|ref|YP_710031.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
 gi|122956339|sp|Q0SMS3|MURD_BORAP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110890687|gb|ABH01855.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 43/299 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q  ++      ++G    +S  +  ++
Sbjct: 102 ISLFL--IFNKNP--IIAVTGTKGKSTLVSLLYQALKKK-YPRVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPILSIITNVYNDHQNYYS 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
               Y   K ++F   + + S  +I  D AY K   K    A   + S   +    +L +
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDKAYYKYFSKFESKAKVILFS---EFNPCNLDQ 251

Query: 282 VCAIHNKQQVTI--SVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                NK +V    ++ G  F+   +F +P        L+A  +   + ID   + + L+
Sbjct: 252 DIFYSNKGEVYFNDNLIGSFFESQVVFMIP-------KLIAFFVAYYLNIDLNHMFQILK 304

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
               +  R EFV    R    Y D A T  +S  + +K+++T  +   ++V G   + D
Sbjct: 305 NFKGIEHRLEFVKL-VRNVMFYNDTASTIPDSTVLSVKSLKTNDNCINLIVGGTDKNLD 362


>gi|329770442|ref|ZP_08261824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
           M325]
 gi|328836565|gb|EGF86225.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
           M325]
          Length = 446

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 41/214 (19%)

Query: 198 RLDGIKLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYS 253
           +L+G K    S    TNLG  H+DYH++ + Y NAK ++++  +  +   + I   D Y+
Sbjct: 167 QLEGTKYFRPSIAAITNLGEGHLDYHKSIENYRNAKRKIYKNQVDTDFLILNIKEKDKYN 226

Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              +    N+      + Y  KF     +++K    I+   ++  S +         LPG
Sbjct: 227 ISEI----NSNI----IFYDTKFNTDADVYIKDNMVIYGDVELFDSTK-------LTLPG 271

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-- 366
              V N + AA +    G D   + + L     V  R ++VG N +G + Y D   T+  
Sbjct: 272 LHNVENGINAAVIAYKKGADIESIRKVLYNFSGVKHRLQYVGEN-KGIKYYNDSKATNPV 330

Query: 367 ---NSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              N+L    KN          VV  CGG +D+G
Sbjct: 331 ATINALSGFEKN----------VVLICGG-QDRG 353


>gi|323491028|ref|ZP_08096220.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
 gi|323314692|gb|EGA67764.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
          Length = 486

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 52/288 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P  S  +I   +++DA  +    R           G QGKF         
Sbjct: 234 VDDPVVRELIPGISRQVITYGFSEDADVRIANYRQE---------GQQGKF--------- 275

Query: 286 HNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                 T+  +GK D D    +PG     NA  A  +     I    +L  +        
Sbjct: 276 ------TVIRQGKADLDITLNIPGRHNALNASAAIAVATEDDISDEAILNAMAGTQGTGR 329

Query: 345 RFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           RF+ +G    G     +  DY H    +++ ++  R      R++++F
Sbjct: 330 RFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTIQAARNGWQDKRLVMIF 377


>gi|170719785|ref|YP_001747473.1| UDP-N-acetylmuramate [Pseudomonas putida W619]
 gi|169757788|gb|ACA71104.1| UDP-N-acetylmuramate [Pseudomonas putida W619]
          Length = 449

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 108/274 (39%), Gaps = 46/274 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++ +S +  + + +G+S  F IG      +F+   RL   +P ++ +A  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIG--GVPQNFSVSARLGD-TPFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    I        NL  DH D      A    +     
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTAI------LNNLEFDHADIF-PDLASIERQFHHLV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +P E   I       +++ ++R    GC   V + G  G++            Q   +
Sbjct: 209 RTIPSEGLVI----HPTTEQALERVIGMGCWTPVQTTGEGGQW------------QARLL 252

Query: 294 SVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           S +G  F+ LF          PL G+  V NAL        +G+  A+ ++ L     V 
Sbjct: 253 SADGSRFEVLFEGQAQGIVDWPLTGQHNVANALATLAAARHVGVVPAMGIDGLSAFKSVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            R E V    +G  IY D+AH   ++   L  +R
Sbjct: 313 RRMETV-AEVQGVTIYDDFAHHPTAIATTLDGLR 345


>gi|330501922|ref|YP_004378791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
 gi|328916208|gb|AEB57039.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
          Length = 450

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 45/292 (15%)

Query: 109 LYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           L+ +H +  I+A+TG++ KS+V + V ++   +G               A    L TP  
Sbjct: 104 LFARHAKAPIVAITGSNAKSTVTTLVGEMAAAAG------------KRVAVGGNLGTP-- 149

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                AL  L+     +V +E SS  L+    D +     +  N+  DH+D +    AY 
Sbjct: 150 -----ALDLLADDVELYV-LELSSFQLETT--DQLNAEVATCLNISEDHMDRYSGLPAYH 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK R+F          +I  DDA S+ ++        +V S  +       K+   +  
Sbjct: 202 LAKHRIFR----GARQVVINRDDALSRPLIAD------QVTSWEFGLGKPDFKRFGLLEE 251

Query: 288 KQQVTISVEGKDFDFLFPLP-----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             + +++     FD L P+      G     NAL A  L  A+G+    +L  L +   +
Sbjct: 252 NGEKSLAFR---FDALLPVSELKIRGAHNQSNALAALALGHAVGLPMEAMLATLRQFAGL 308

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGG 392
           P R ++VG   RGG  Y D +  +N  +    ++ +    +G+++++ G  G
Sbjct: 309 PHRCQWVG--ERGGVSYYDDSKATNVGAALAAIEGLGADIAGKLVLIAGGDG 358


>gi|124004439|ref|ZP_01689284.1| UDP-N-acetylmuramate--alanine ligase [Microscilla marina ATCC
           23134]
 gi|123990011|gb|EAY29525.1| UDP-N-acetylmuramate--alanine ligase [Microscilla marina ATCC
           23134]
          Length = 479

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 14/149 (9%)

Query: 289 QQVTISVEGKDFDF----------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           Q V +S E   FDF             +PG   + NA VA  + + +GID   + + L  
Sbjct: 255 QHVQVSPEAFYFDFHTEDITIQNIKIKVPGYHNIINATVAIAVALELGIDPQQIRDALAV 314

Query: 339 LHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              V  RFE++  +     IY+ DYAH    +E+ LK+++ +   + I          + 
Sbjct: 315 YKGVKRRFEYILQHK--NIIYIDDYAHHPTEIEVFLKSVKAMYPNKKITAIFQPHLFTRT 372

Query: 398 KRPIMG-KIALDLADIAIVTDDNPRSEDP 425
           +  + G   +L L D  ++ D  P  E P
Sbjct: 373 RDFLDGFAKSLSLTDQLVLLDIYPAREQP 401


>gi|91762846|ref|ZP_01264811.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718648|gb|EAS85298.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 464

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+ R+H+D++ + +      ++   ++ P    + I  DD  +K+++ +          
Sbjct: 182 TNIDREHMDFYNSMKDLKELFIKFINKV-PSFGKSFICIDDKNNKDLLSKLKMKNYYTYG 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQ--VTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCI 323
              +  F ++K +       Q  + I++ GK          PL G   + N+  A  + +
Sbjct: 241 TDNKSNF-YIKNIKQEKEYSQYDLAINLPGKKNLTIRKIKLPLLGIHNIRNSTAAIAVAV 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            IGI   ++ + L++   V  RF  + T+ R    Y DYAH    +  +L  +R
Sbjct: 300 TIGISQNIIKKGLKEFKGVQRRFNKIFTH-RETNFYDDYAHHPTEIREVLNGVR 352


>gi|319949798|ref|ZP_08023821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
 gi|319436538|gb|EFV91635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
          Length = 500

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 125/322 (38%), Gaps = 53/322 (16%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-------RS 88
           DSR +  G +F+A+ G + DGH F+ +A+  GA   +V+      D +  +        +
Sbjct: 33  DSRRLTPGGLFLALPGERVDGHDFVARALDAGAAGALVAHEVDGVDGAQIVVPAVDRRET 92

Query: 89  NTPILVVDNTRKFLSLFAS----------RLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           N   L  D      ++  +          RL   H   ++ VTG+SGK+S    +  +  
Sbjct: 93  NAMALAADTDGSGAAVLTALGALARASVDRLVADHGLVVVGVTGSSGKTSTKDLIGAVLS 152

Query: 139 RSGL-----SSF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +G       SF  +IG   T     +D         +L   LS  +   +  ++     
Sbjct: 153 AAGTVVAPPGSFNNEIGHPWTALRADEDTD-------FLVLELSARAPGNIRELAA---- 201

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---PAIIYA 248
             L   R+       G   N+G  H+    +++     K  L E  LP  +    A++ A
Sbjct: 202 --LAPPRI-------GVVLNVGTAHLGEFGSREVIAATKGELVEA-LPDAAHGGVAVLNA 251

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFLFPL 306
           DD     V   A      V++VG  G      +   + +  +   T+     + +    +
Sbjct: 252 DD---DRVAAMAGRTSAEVVTVGLGGSADVRAEGVRLDDEVRASFTLVTPRGEAEVALRV 308

Query: 307 PGEFQVYNALVAAGLCIAIGID 328
            GE QV NAL AA + +A G+D
Sbjct: 309 HGEHQVGNALSAAAVGLACGMD 330


>gi|256394930|ref|YP_003116494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256361156|gb|ACU74653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 447

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 33/220 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R  + G +FVA  G   DGH F+ QA   GA A++ +   SL           P +VV
Sbjct: 32  DGRKAEPGGLFVAFAGEYADGHDFVDQAARAGAAAVLGTRPTSL-----------PTVVV 80

Query: 96  DNTRKFLSLFASRLYGK-HPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152
            + R+ L   A  +  +  P   ++ VTG+ GK+     +  +   +        PT +T
Sbjct: 81  QDAREALQRLAKHVVDRLRPGLTVVGVTGSQGKTGTKDLIAAVLSSA-------APTVAT 133

Query: 153 ISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             S   +N L  P  +  A A +   +   G  HV   A+         D +        
Sbjct: 134 AGSL--NNELGVPLTMLRADAETRFLVLEMGARHVGDIAA-------LTDLVAPDVAVVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           N+GR H+    ++ A    K  L + L P  + A++ ADD
Sbjct: 185 NVGRAHLGEFGSRGAIAKTKAELVQGLAPGGT-AVLNADD 223


>gi|306844329|ref|ZP_07476921.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO1]
 gi|306275401|gb|EFM57142.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO1]
          Length = 471

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 14/188 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  +   R+++
Sbjct: 181 TNIDPEHLDHYGNFDA-VRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDR--RIIT 237

Query: 270 VG----YQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLC 322
            G     + +FI+ +   A      V  S +G+     D   P+PG   V NA  A  + 
Sbjct: 238 YGSNPQAEVRFINQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATAAIAVA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI S  +   L     V  RF   G+ + G  I+ DY H    +  +LK  R  TS 
Sbjct: 298 HELGISSDDIRRGLGSFGGVKRRFTHTGSWN-GVEIFDDYGHHPVEIRAVLKAAREATSQ 356

Query: 382 --GRIIVV 387
             GR++ +
Sbjct: 357 AGGRVVAI 364


>gi|15679903|ref|NP_275877.1| UDP-MurNac-tripeptide synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|7482867|pir||B69198 UDP-N-acetylmuramyl tripeptide synthetase related protein -
           Methanobacterium thermoautotrophicum (strain Delta H)
          Length = 450

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 117/299 (39%), Gaps = 53/299 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTGT+GKS+    +  I + +G SS+     +   S ++ N L  P    +++ ++  
Sbjct: 87  VVVTGTNGKSTTTHMIHHIIETTGASSY-----TNTDSRSEFNTLIDP---VVSQQIAEA 138

Query: 178 SSQGVTH---VSVEASSHGLDQHRLDGIKLIAGS-------FTNLGRDHIDYHQTQQAYF 227
           SS G      + V      L +   D  +++  +        TN+  DHI   ++ +  F
Sbjct: 139 SSDGAPEFMVIEVSEVQGWLGRVMRDHARMMTAAIGPEVVVITNVAMDHIGLVESVEDVF 198

Query: 228 N---AKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVG------YQGKFI 277
                 +R  E  +     A++ ADD   + V   AH N G  V+  G      Y G+ I
Sbjct: 199 REVAGALRAIESGV-----AVLNADD---ERVRAMAHVNPGLSVVFYGSDSPVRYDGEGI 250

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           H+     I  ++               P   E  + N L AA  C+ +G     +   ++
Sbjct: 251 HIGGDLIIPAEE--------------LPFRSEHFIQNTLAAAAACLELGFSPEDIRMGVK 296

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
               +  RF  + T      +  D+AH  + +   +++      GR+ VV    G R +
Sbjct: 297 TYRPLKRRFSVLMTEP---LVIDDFAHNPSGIRFTVRSAAANLRGRLWVVNAIRGSRGE 352


>gi|46201829|ref|ZP_00208265.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 28/194 (14%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++ T +    A  R F E +P    A +  D    + ++ R  +   ++++
Sbjct: 182 TNIDPEHMDHYGTVEKLHEA-FRTFVENIPFYGFAAMCIDHPEVQALVARVPDR--KLVT 238

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----------------FPLPGEFQVY 313
            G+  +        A+   + +T+ ++G  +D +                 P+ GE  V 
Sbjct: 239 YGFNHQ--------ALVRVENLTMDIKGASYDVVITDRVTGATRTISGIHLPMYGEHNVL 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L A  +   +G+ + +V + L     V  RF   G  ++G  +  DY H    +  +L
Sbjct: 291 NSLAAIAVANELGLPNDVVKKALGGFKGVKRRFTRTG-EAKGVTVIDDYGHHPVEIAAVL 349

Query: 374 KNIRTITSGRIIVV 387
           K  R+   G +I V
Sbjct: 350 KAARSACQGNVIAV 363


>gi|294627149|ref|ZP_06705737.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598582|gb|EFF42731.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 136/345 (39%), Gaps = 53/345 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS---LFASR-LYGKH 113
           + P  I+  A  ++V +A S        R N  +  V+D  R++ S     A R L G+ 
Sbjct: 54  YAPSNISPDATEVIVGNALS--------RGNPAVEAVLDAGRRYTSGAQWLAERVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + LAV GT GK++  + +  + + +G +     P   I   A+D              
Sbjct: 105 --DTLAVAGTHGKTTTTTILSYLLEAAGRA-----PGFLIGGVAEDF------------G 145

Query: 174 LSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +S    QG   V VEA  +       + +    + +     NL  DH D      A    
Sbjct: 146 VSARLGQGREFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAI--- 201

Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCA 284
             R F  L+   P     I+  +DA+  EV+      GC   V   G++       ++ A
Sbjct: 202 -QRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTPVERFGFEASLDWSARLIA 256

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   +    +     +PL G   V N L A     A+G+D A V+  L +   V  
Sbjct: 257 ADGSAFAVLHRGVEIGQVQWPLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVKR 316

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           R E +G N+R   +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 317 RLEVIG-NARDITVYDDFAHHPTAIATTLQGLRAKVGAARVLVAM 360


>gi|556014|gb|AAB40043.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 348

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 103/284 (36%), Gaps = 60/284 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + Q +  +SF IG  +      Q N                 
Sbjct: 20  VAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGDGT-----GQGNE---------------- 58

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S+     + E   H L       I       TN+  DH DY  +    F+A    F+E+
Sbjct: 59  NSEYFVFEACEYRRHFLSYQPDYAI------MTNIDFDHPDYFSSIDDVFDA----FQEM 108

Query: 238 LPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             + +  II   D    E + + H N        G +  F            + +  S E
Sbjct: 109 ALQVNKGIIACGD---DEHLPKIHANVPVVYYGTGEENDF----------QARNIVKSTE 155

Query: 297 GKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           G  FD          F  P  G   V N+L    LC    IDS+++   L+    V  RF
Sbjct: 156 GTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRF 215

Query: 347 EFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVF 388
                   G ++ + DYAH    +++ ++  R     R I+ VF
Sbjct: 216 ---NEKQLGDQVLIDDYAHHPTEIKVTIEAARQKYPDREIVAVF 256


>gi|124265651|ref|YP_001019655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
 gi|124258426|gb|ABM93420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
          Length = 470

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 154/378 (40%), Gaps = 41/378 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V SD+R ++AG +FVA+ G + D H F+PQA A GA A +     +    +         
Sbjct: 30  VHSDTRTLRAGDLFVALKGERFDAHDFLPQARAAGAVAAIAEHGLAEAGLAG-------- 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTS 151
           L V ++R  L    +    +    ++AVTG++GK++V   +  I +   G ++F     +
Sbjct: 82  LHVADSRAALGTLGANWRARMSLPLIAVTGSNGKTTVTQMIASILRAWVGDAAF-----A 136

Query: 152 TISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           T  +F  D        RL   +  +   A+  L   G+ HV   A    L +     + L
Sbjct: 137 TEGNFNNDIGVPLTLLRLRQDADTWHRAAVVEL---GMNHVGEIAQ---LARMAAPTVAL 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +     N  R+H ++  + +A       +  E+L     A+  +DDA++         AG
Sbjct: 191 V----NNAQREHQEFMASVEAVARENGAVI-EVLGANGTAVFPSDDAHAAVWQAL---AG 242

Query: 265 CR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            R  L+   +G    + +     +     +            + G   V NAL A    +
Sbjct: 243 TRPTLTFSLEGPSDLVAEAVWSGDHWAAVLHTPAGATAIRLRVAGWHNVKNALAATACAL 302

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN--SLEMILKNIRTI 379
           A G     V   LE    V GR + V    RGGR    VD ++ +N  S+   +  + T+
Sbjct: 303 AAGCPLEAVARGLEAFEPVKGRSQ-VKALQRGGRAVTLVDDSYNANPDSVRAAIDVLATL 361

Query: 380 TSGRIIVVFGCGGDRDQG 397
              R +V+   G   DQG
Sbjct: 362 PGPRWLVLGDMGEVGDQG 379


>gi|309775628|ref|ZP_07670628.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916722|gb|EFP62462.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 38/192 (19%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH+DY++  + Y NA    FE    + +   +++ DD            A  R+L
Sbjct: 169 TNIELDHVDYYKDMEDYCNA----FETFANQIQKGVVLFGDD------------AAVRLL 212

Query: 269 SVGYQGKFIHLK---KVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNA 315
            V     +  L+    V A+H +Q    +  G  FD L+          P  G+  ++N+
Sbjct: 213 HVKTPHLYYGLQDDNDVQAVHIQQ----NENGMQFDVLYHKELFGHFELPFVGKPLLWNS 268

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILK 374
           L    + I  G+ + L+ E L+    V  RF        G  +Y+ DYAH   +++ +++
Sbjct: 269 LGVIAVGIMEGLSAQLLQEGLQSFPGVKRRF---TIEENGDNVYIDDYAHHPTAVKYMIE 325

Query: 375 NIRTITSGRIIV 386
             R    G+ ++
Sbjct: 326 AARIKYPGKKVI 337


>gi|302338774|ref|YP_003803980.1| FolC bifunctional protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635959|gb|ADK81386.1| FolC bifunctional protein [Spirochaeta smaragdinae DSM 11293]
          Length = 444

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 28/189 (14%)

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-------CAIHNKQQVTISVEGKDFD 301
           +DA  + + KRA   G R         F +L ++       C+++  +   + +EG +  
Sbjct: 212 EDAALEVLRKRAKELGSR---------FYYLPEIYPVVRSRCSLYGSE---VEIEGAEEK 259

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   + G+FQ  NA +A  +   +  DS  +         +PGR E + ++     I 
Sbjct: 260 KHFSIAMTGDFQAENAALAYLVLRTVETDSEALFSGFASA-TLPGRIETISSDPL---II 315

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VD AHT +S+  ++ N R +    +I+     G R      +   IA    DI I     
Sbjct: 316 VDAAHTESSVRRVIANFRNMFDDGVIIFGSISGKRSDA---MAALIAPHFHDIIISRPGT 372

Query: 420 PRSEDPEKI 428
            +  DP+ +
Sbjct: 373 FKKSDPKAL 381


>gi|257888485|ref|ZP_05668138.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
 gi|257824539|gb|EEV51471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 22/191 (11%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   HIDYH T++ Y  AK  L + +  ++   + +       E+ + A     RVL
Sbjct: 188 ITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLNWNQS----ELQELAQRTKARVL 243

Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               +      ++       + K+++  IS  G        +PG   V NAL A  +   
Sbjct: 244 PFSTKEVLEDGVYADDHAIYYRKEKIMEISELG--------VPGTHNVENALAAITVAKL 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGR 383
            GI +  + + L   H VP R ++VG   +G + Y D   T+  + +M L    T     
Sbjct: 296 YGISNEAIRQTLHLFHGVPHRTQYVG-EIQGRKFYNDSKATNILATKMALSGFETAK--- 351

Query: 384 IIVVFGCGGDR 394
            +V+   G DR
Sbjct: 352 -VVLLAGGLDR 361


>gi|237807298|ref|YP_002891738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
 gi|237499559|gb|ACQ92152.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
          Length = 430

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 26/133 (19%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA     K P  ++A+TG++GKS+V + V  + +++G   F++G    I + A D  
Sbjct: 91  IELFARE--AKAP--VVAITGSNGKSTVTTLVGLMAEQAG---FKVGIGGNIGTPALD-L 142

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L  P+ +Y+ +  S+          +E +S          ++  A    NL  DH+D + 
Sbjct: 143 LLQPADLYVLELSSF---------QLETTSS---------LQPAAAVILNLSEDHLDRYD 184

Query: 222 TQQAYFNAKMRLF 234
               Y  AK R+F
Sbjct: 185 GMAGYLAAKQRIF 197


>gi|73662332|ref|YP_301113.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|109892744|sp|Q49YH1|MURC_STAS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72494847|dbj|BAE18168.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 437

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 103/276 (37%), Gaps = 44/276 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  +          L  P+  Y A      
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTG---------LGIPASDYFAFE---- 150

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                   + E   H L  H    I       TN+  DH DY +     FNA    F+E+
Sbjct: 151 --------ACEYRRHFLSYHPDYAI------MTNIDFDHPDYFKDVDDVFNA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV 295
                 AII + DD + +++      A   V   G+  K         I  K  +  +  
Sbjct: 193 AHNVKKAIIAWGDDTHLRKI-----EADVPVYYYGFSNKDDVYADNLEISEKGTKFDVYF 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ FD FL P  G+  + NAL    +     ++   + E LE    V  RF        
Sbjct: 248 KGEYFDTFLSPQFGDHNILNALSVITISYLESLNIDNIKEALETFGGVKRRF---NETKV 304

Query: 355 GGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVF 388
           G ++ V DYAH    +   ++  R     + +I VF
Sbjct: 305 GNQVLVDDYAHHPREISATIETARKKYPNKDVIAVF 340


>gi|320106152|ref|YP_004181742.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924673|gb|ADV81748.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 124/337 (36%), Gaps = 65/337 (19%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +++A+TG++GK++  S + +I + +G+ +   G                   I L     
Sbjct: 109 SVVAITGSNGKTTTTSLIGEILRGAGVPTLVGGN------------------IGLPVVEM 150

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S   T   +E SS  L+       K+      N+  DH+D H T + Y  AK R+ E
Sbjct: 151 VAESTDTTWSVLEISSFQLETVETFAPKIAV--VLNITPDHLDRHGTFEKYAEAKTRITE 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAI---HN 287
                ++PA     +A  K     A     ++          QG F+H   +  +     
Sbjct: 209 ----MQTPADFLVLNAEDKPTQMVAAKTKAQIFWFSPRRPIKQGAFVHGDSILFLPREGG 264

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +  + V         PL G   V N L A   C   G+ S  + E +     V  R +
Sbjct: 265 KAEPVMPVSE------IPLVGAHNVENVLAAVCACRLAGVSSEKIREGVRGFKAVDHRLQ 318

Query: 348 FVGTNSRGGRIYVDYA-----HTSNSLEMILKNIRTITSG----------------RIIV 386
           FV   + G + Y D        T+ +L     N+  I  G                R++ 
Sbjct: 319 FVAEVA-GVKYYNDSKATNVDATAKALASFEGNVLLILGGKDKGSDYTELNDLLRERVVT 377

Query: 387 VFGCGGDRDQGKRPIMGKIALDLAD-----IAIVTDD 418
           V+  G   ++ +  + G + L  A+     +A+ T+D
Sbjct: 378 VYTIGSAAEKIETQLAGVMTLKHAETLERAVALATED 414


>gi|203284490|ref|YP_002222230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia duttonii
           Ly]
 gi|201083933|gb|ACH93524.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia duttonii
           Ly]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 27/168 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ ++P  I+A+TGT GKS++AS + ++   S   + ++G    IS     + 
Sbjct: 102 ISLFL--MFNRNP--IIAITGTKGKSTLASLLYRVLVAS-YPNVKLGGNIGISPLNFLDE 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SPI L                 E SS  L  H +  +  +    TN+  DH +Y+ 
Sbjct: 157 LDGISPIIL-----------------ELSSWQL--HDIKSLSPMISIITNVYCDHQNYYS 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
               Y   K ++F   + + S  +I  D AY     +  HN    + S
Sbjct: 198 NFDDYIEDKAKIF---INQNSGILIVQDQAYCNYFSRFKHNLKIVLFS 242


>gi|289550504|ref|YP_003471408.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180036|gb|ADC87281.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 437

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 97/274 (35%), Gaps = 40/274 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    Q +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGLG-IPQSDYFAFEACEYRRHFLSYR 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +  +  F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDVEDVFDA----FQEM 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296
                 AII    A+  +   R  N    +   G   K  ++   +       +  + + 
Sbjct: 193 ANNVKKAII----AWGDDEHLRKLNVDIPIYYYGLSDKDDVYANDIQITDKGTEFDVYIN 248

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK +D FL P  G   + NAL    +     +D A + E LE    V  RF    T    
Sbjct: 249 GKYYDHFLTPQYGNHNIQNALAVITISYLEDMDVANIKEALETFGGVKRRFN--ETKYDQ 306

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             +  DYAH    +   ++  R    +  +I VF
Sbjct: 307 QVLVDDYAHHPREISATIETARKKYPNKEVIAVF 340


>gi|282883313|ref|ZP_06291907.1| bifunctional protein FolC [Peptoniphilus lacrimalis 315-B]
 gi|281296817|gb|EFA89319.1| bifunctional protein FolC [Peptoniphilus lacrimalis 315-B]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 14/184 (7%)

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVP----- 343
           +  +++E KD++      G +Q+ N+++     + I I  AL+  + L+   ++      
Sbjct: 238 KFILNLEKKDYEISLDQIGLYQIENSILCL-YSLFILIKKALIDFDFLKATKLIKDAKWK 296

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR + V   S+  RI +D AH    +E +  N++     ++ +V     D+D  K  ++ 
Sbjct: 297 GRMDLV---SKNPRILLDGAHNIGGIEKLRDNLKLFYFDKLYLVSSILKDKDHKK--MLE 351

Query: 404 KIALDLADIAIVTDDNPRS-EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +I  ++AD+ I+ D   +S ED E +  E    +   + K +  EA+   + M    D++
Sbjct: 352 EIG-EIADLLILVDLESKSNEDIEILEKEAQISVKKVMCKSSLKEALNYIVPMARPDDLI 410

Query: 463 VVAG 466
           +V+G
Sbjct: 411 LVSG 414


>gi|227014297|gb|ACP10507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
          Length = 467

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 104/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 127 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 173

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q    Y
Sbjct: 174 ------ALDLISPDVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMGDY 224

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 225 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 263

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 264 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVTNVLTVLALLDSAGVNFRLALDA 323

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 324 LKSYTGLTHRCQVVADN 340


>gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
          Length = 821

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 136/321 (42%), Gaps = 34/321 (10%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +DSR +      +F A+     DGH +I           VVS+   L +F +   +N   
Sbjct: 29  TDSRRLSFPEQSLFFALQTKTNDGHNYIQGLYKLRVRNFVVSTF--LPEFESMPEAN--F 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +T K L   A+    +    ++ +TG++GK+ V  F+ Q+      + F I     
Sbjct: 85  LVVKDTLKALQKLAAHHRKRFNIPVIGITGSNGKTIVKEFLYQLLH----NEFNI----V 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
            S  + +++L  P  ++    +S  ++ G+    +   S   +  RL   I    G  TN
Sbjct: 137 RSPRSYNSQLGVPLSVW---QMSDKNTLGIFEAGI---SQPDEMERLQPIIAPTIGVITN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRA---HNAGCR 266
           +G  H      Q+ + ++  +  E+L L  +  AIIY  DDA+    ++ A   H A   
Sbjct: 191 IGEAH------QENFISSTQKCLEKLTLFNDCEAIIYDGDDAFIANCIESACLSHKA--I 242

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S       ++++ +  + ++  +  ++ G D  +  P   +  + NA+    + + + 
Sbjct: 243 TWSRTDSEAPLYIESIKKLDSETIIRCTLLGFDRTYTIPFTDDASIENAIHCMAVMLYLK 302

Query: 327 IDSALVLEHLEKLHVVPGRFE 347
             S   +E  ++L  V  R +
Sbjct: 303 PTSVNDIEKFKRLEPVAMRLD 323


>gi|330448820|ref|ZP_08312467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493011|dbj|GAA06964.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 450

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 110/282 (39%), Gaps = 25/282 (8%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPI 168
           Y  H   ++AV+GT GK++ AS +  I +  G    F +G    + +F    RL   S  
Sbjct: 98  YLLHDRWVMAVSGTHGKTTTASMLAWILEDCGYQPGFLVG--GVLGNFGISARLGE-SMF 154

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           ++ +A  Y S+        +  S  +  H    I        NL  DH D     +A   
Sbjct: 155 FVVEADEYDSA------FFDKRSKFVHYHPRTLI------MNNLEFDHADIFDDLKAI-- 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              R F  L+ +  P           + +      GC    + Y G   H +      + 
Sbjct: 201 --QRQFHHLV-RTVPGNGRILAPKGVKNIDETLEMGCWS-ELEYIGGDGHWRAEKHREDG 256

Query: 289 QQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               + ++G +   + +PL G+  V NAL+A      +G+   L  E L K      R E
Sbjct: 257 SVFDVYLDGDNVGTVRWPLVGDHNVNNALMAIAAARHVGVTPDLACEALAKFINTKRRLE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             G  + G  +Y D+AH   ++E+ L  +R  +   RI+ V 
Sbjct: 317 LKG-EANGVTVYDDFAHHPTAIELTLGGLRAKVGDSRILAVL 357


>gi|320531620|ref|ZP_08032562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320136149|gb|EFW28155.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 519

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 28/163 (17%)

Query: 112 KHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            HP+   L +TGT GK++  S +  I    GL++  +G             + TP     
Sbjct: 132 SHPDVPWLTLTGTDGKTTTVSMLSTILAAQGLTAPAVG------------NIGTP----- 174

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +  + S     ++VE SS  L  H    +  +A +  NL  DH+D+H   +AY   K
Sbjct: 175 --VIEAVLSGSADALAVELSSFQL--HTTRTLAPLASTCLNLAADHLDWHGGLEAYARDK 230

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY 272
            R++         A+    DA +++++++A    GCR  +VG+
Sbjct: 231 ARVYSG---TRLAAVYNLADAATEDMVRQADVVQGCR--AVGF 268


>gi|145220556|ref|YP_001131265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189082914|sp|A4SH04|MURD_PROVI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145206720|gb|ABP37763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 465

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 124/303 (40%), Gaps = 40/303 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA-KALS 175
           I+ +TGT GK++ A+ V  I    G                + NR      I +   A+ 
Sbjct: 110 IVGITGTDGKTTTATLVHDIAAAEG--------------SLRGNRAWGVGNIGVPFSAMV 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
               +G T V VE SS+ L+  R    +      TN+  DH+  Y  + + Y  AK R+ 
Sbjct: 156 GEMEEGDTAV-VELSSYQLE--RCVTFRPDVSVLTNITPDHLGRYDGSMERYAAAKFRIC 212

Query: 235 EELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRV---------LSVGYQGKFIHLKKVCA 284
             +  KE   +IY ADD+  +E          RV           V + G F+   ++  
Sbjct: 213 --MNQKEGDTLIYNADDSLLEEHFGGGAFPFRRVPFSLEEPPSAGVMHDGVFLRDGEIVV 270

Query: 285 IHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +  +  ++   +   FL     G   +YNAL A  +  A+GI   +V + L     V 
Sbjct: 271 ARDGGERRVA---RTDGFLKNSFRGRHNIYNALAAVAVSEALGIGDGVVRDGLGAFQGVR 327

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +FV     GG  +++ +  +N   M  +       G+I+++ G G D+    RP++ 
Sbjct: 328 HRQQFV--RRLGGADWINDSKATNVNAM--RQALEAVEGKIVLIAG-GRDKGNDYRPVLP 382

Query: 404 KIA 406
            +A
Sbjct: 383 LVA 385


>gi|256821827|ref|YP_003145790.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
 gi|256795366|gb|ACV26022.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 131/345 (37%), Gaps = 57/345 (16%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS---LFASRLYGKHP 114
           F P+ I +  + +VV +A S        R N  +  V++    + S     A  +   H 
Sbjct: 53  FDPKHIPEHTDCVVVGNAMS--------RGNPSVEYVLEQGLTYRSGPQWLAENII--HD 102

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LA  GT GK++ AS +  I Q + L   F IG      +F    R+T  SP ++ +A
Sbjct: 103 KWVLAAAGTHGKTTTASMLAWILQYANLEPGFLIG--GVPENFGLSARVTE-SPFFVVEA 159

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y         +          +R   + +      NL  DH D     +A    +   
Sbjct: 160 DEY-------DTAFFDKRSKFVHYRPRTLIM-----NNLEYDHADIFPNLEA-IKTQFHH 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++P     I   DDA  + V++R              G +   + +   H  Q   +
Sbjct: 207 LLRIVPGNGLVIYPKDDANLQNVVER--------------GLWSDKELIGDEHGWQYKLL 252

Query: 294 SVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +G  F+ LF          PL G   V NAL A       G+ ++   + L +   V 
Sbjct: 253 EEDGSHFEVLFAGQKQGEVNWPLIGLHNVNNALAAIAAARHAGVPASHCCDALAEFKNVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
            R E  G  S G ++Y D+AH   +++  L   R  +   R+I +
Sbjct: 313 RRMELKGEAS-GVKVYDDFAHHPTAVKTTLDGFRAKVGEQRVIAI 356


>gi|15639888|ref|NP_219338.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189026126|ref|YP_001933898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema pallidum
           subsp. pallidum SS14]
 gi|6093445|sp|O83873|MURD_TREPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3323217|gb|AAC65856.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018701|gb|ACD71319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema pallidum
           subsp. pallidum SS14]
 gi|291060261|gb|ADD72996.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 532

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 29/216 (13%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           E+ H+ I   I +GA  I +S+A   Q   A I ++            +SLF  RL    
Sbjct: 75  ENAHVVIKNPIVKGAHNIYLSAA---QRAGARIETD------------ISLFL-RL---S 115

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  +LAV+G+ GKSS AS +    +  G  +F +G  ST+S        T  +P+ L   
Sbjct: 116 PAPLLAVSGSKGKSSTASALCYSLRALGFPAF-LGGNSTVSPLEFVRHTTPATPVVLE-- 172

Query: 174 LSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              LSS  +  + +V+A  H +  H    ++      T +  DH +++   ++Y   K  
Sbjct: 173 ---LSSWQLADLRAVDAQDHTV--HHAGLLRPEIAIMTPIMADHQNWYADMESYVADKQV 227

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           L+      ++  +  ADD +       A   G RV 
Sbjct: 228 LYAHQGTHDT-LLCNADDGWGPRFACEAQKNGVRVF 262


>gi|320535924|ref|ZP_08035992.1| UDP-N-acetylmuramate--alanine ligase [Treponema phagedenis F0421]
 gi|320147228|gb|EFW38776.1| UDP-N-acetylmuramate--alanine ligase [Treponema phagedenis F0421]
          Length = 479

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 14/189 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T++  DH D++   +    A ++  + L P+ S     ADD  +KE +  A ++   ++ 
Sbjct: 190 TSVESDHQDFYPQYEDILAAFLQYIDRL-PQFSEIFYCADDPGAKEAINLAFSSRPDLIY 248

Query: 270 VGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + Y G+ +  +    IH    +++  S++G   +F   +PG   V NA  A  L +++  
Sbjct: 249 IPY-GESVSSEFGVKIHGVRDEKLYFSLKGFAGEFYLTVPGHHNVLNAAAAIALVLSLVK 307

Query: 328 ---------DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                    D  ++ + L        R E VG  ++G     DYAH   +++  LK ++ 
Sbjct: 308 LERKETTINDITIIRKALASFKGAKRRSEIVG-EAKGILFMDDYAHHPTAIKTTLKGLKE 366

Query: 379 ITSGRIIVV 387
               R I+V
Sbjct: 367 FYPNRRIIV 375


>gi|312901615|ref|ZP_07760886.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
 gi|311291303|gb|EFQ69859.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
          Length = 306

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 83/185 (44%), Gaps = 8/185 (4%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            + T +G  H++   ++     AKM + + L  K+    + +D+   + ++++      +
Sbjct: 32  AAITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEPLVEKVTQ---Q 87

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V++ G+  +   L+ +     K+Q +  +      F  P+PG + V NAL+A G+     
Sbjct: 88  VITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIGRYFQ 146

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRI 384
           +  + + + L    +   R E++   + G  I  D Y     ++ ++L +   ++  G+ 
Sbjct: 147 LTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLDSFSKMSKVGKR 205

Query: 385 IVVFG 389
           I V G
Sbjct: 206 IAVLG 210


>gi|296112510|ref|YP_003626448.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|295920204|gb|ADG60555.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|326564127|gb|EGE14365.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           46P47B1]
 gi|326564829|gb|EGE15037.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           12P80B1]
 gi|326566496|gb|EGE16643.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           103P14B1]
 gi|326568016|gb|EGE18108.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC7]
 gi|326570680|gb|EGE20714.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC1]
 gi|326571236|gb|EGE21259.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC8]
 gi|326573081|gb|EGE23054.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis CO72]
 gi|326577221|gb|EGE27114.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           101P30B1]
 gi|326577784|gb|EGE27656.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis O35E]
          Length = 486

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 23/201 (11%)

Query: 202 IKLIAGSFTNLGRDHID-----YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           ++ +A   TN+  DH++     + + +QAY       F   +P    A++  DD   KE+
Sbjct: 189 LRPMACVVTNIDEDHMETYEGSFDKLKQAYVQ-----FLHNMPFYGLAVLCGDD---KEL 240

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVY 313
                +    V++ G + K   ++ V  I +  +   +V  KD         +PG   VY
Sbjct: 241 YAMIDDIARPVITYGLE-KHNDVQAVDVIADGTKTHFTVLRKDKKPLPITLNIPGIHNVY 299

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYV-DYAHTSNS 368
           NAL A  +    G+    + + +EK   V  RFE  G    T+  G  + + DY H    
Sbjct: 300 NALGAITMATDEGVSDKAICQAVEKFAGVGRRFENNGSYPLTDGSGDVVLIDDYGHHPTE 359

Query: 369 LEMILKNIR-TITSGRIIVVF 388
           + M +K  R +    R++++F
Sbjct: 360 IAMTIKAARQSYPDRRLVMMF 380


>gi|254436097|ref|ZP_05049604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
 gi|207089208|gb|EDZ66480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
          Length = 463

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 126/302 (41%), Gaps = 44/302 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS   +L + +        I VV +    + LFAS  Y K P  ++ +TG++GKS
Sbjct: 84  AEQLVVSPGVALSEPAILAARARGIPVVGD----IELFAS--YVKAP--VIGITGSNGKS 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S ++ + +++G      G             L TP+   L K +  L    ++   +
Sbjct: 136 TVTSLLEAMARQAGRQVLAGG------------NLGTPALELLEKPVPDLYILELSSFQL 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E +++ LD         +A    N+  DH+D +    AY  AK R++          +I 
Sbjct: 184 E-TTYTLDA--------VAACVLNISPDHMDRYPDLDAYCQAKARIYR----GTGTMVIN 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LF 304
           ADD +    + + H   C   ++G      +      +  +   T  V G +        
Sbjct: 231 ADD-FRVASLVQPHRP-CLRFTLGMPAVDEY-----GLQERAGETWLVRGHERLLSARRL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G   + NAL A  L  A+G+  A +L  L+    +P R E++     G R Y D   
Sbjct: 284 PLAGRHNLANALAALALGEAVGLPRAAMLSALQAFSGLPHRCEWL-AEVNGVRWYNDSKG 342

Query: 365 TS 366
           T+
Sbjct: 343 TN 344


>gi|150016657|ref|YP_001308911.1| FolC bifunctional protein [Clostridium beijerinckii NCIMB 8052]
 gi|149903122|gb|ABR33955.1| FolC bifunctional protein [Clostridium beijerinckii NCIMB 8052]
          Length = 437

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 18/233 (7%)

Query: 243 PAIIYADDAYSKEV-MKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF 300
           P ++Y     ++EV +K A     +V  V  Q GK + +       N   V +      +
Sbjct: 195 PVVLYPQKKEAEEVILKIAEEKKSKVYFVNEQNGKLVDINYDDFYQN---VVVKSIKNIY 251

Query: 301 DFLFPLPGEFQVYNALVAAG----LCI--AIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              FPL GE Q+ N  VA      LC    I ++++L+ + L+++ V  GR E +    +
Sbjct: 252 KIKFPLLGEHQILNLGVALSAIEVLCENEKIELNTSLIEKALQEV-VWIGRLEVL---KK 307

Query: 355 GGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I +D AH  + ++ + KNI +     ++ ++ G   D+    + ++ +I      + 
Sbjct: 308 KPTIVIDGAHNIDGIKALRKNIEKYFKYNKLYLLLGILADKQV--KEMVQEITPLAEKVY 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +T  + R+E  E ++ EI++     I   +  EA   A++   ++D++VV+G
Sbjct: 366 ALTPHSERAELSENLKEEILNYNSNTIALESYEEAFSLALKEAKEEDLIVVSG 418


>gi|328952332|ref|YP_004369666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452656|gb|AEB08485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 467

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 120/296 (40%), Gaps = 51/296 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + A++GT+GK++  + V ++   SG      G   T              P+     +  
Sbjct: 117 VAAISGTNGKTTTTTLVGKMLLASGKRPLVGGNIGT--------------PL-----VDL 157

Query: 177 LSSQGVTH-VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           LS Q     + +E SS  LD       +  A +  N+  DH+D +   QAY  +K  LF 
Sbjct: 158 LSQQAEADCIILEVSSFQLDTA--PSFRPRAAALLNISEDHLDRYPDFQAYARSKAGLFR 215

Query: 236 ELLPKESPAIIYADD----AYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQ 290
              P E+ A++ ADD    A + +V  + +    R  L+ G       L +VC       
Sbjct: 216 RQGPSET-AVLNADDPKAAALADQVQSQVYLFSTRKKLTFGAWQAGESL-RVCLARGP-- 271

Query: 291 VTISVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                E K     FP     LPG   + N + A  L + +G       E L +   +P R
Sbjct: 272 -----EAK-----FPLNKIVLPGRHNLENIMAALLLALEMGATPQGCAEALARFKGLPHR 321

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            E+V   + GG  + D +  +N +  +++++      R +V+   G D+    RP+
Sbjct: 322 LEWVA--NIGGVDFYDDSKGTN-VGAVVRSLEHFD--RPVVLIAGGRDKGGDYRPL 372


>gi|262404717|ref|ZP_06081272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
 gi|262349749|gb|EEY98887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
          Length = 440

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 104/256 (40%), Gaps = 53/256 (20%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDKPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 147 ------ALDLISPDVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F         A++ ADD  ++    RA  A  +V++ G +            H
Sbjct: 198 RQAKLRIFGH----AETAVVNADD--TQTFPDRA--AHLQVVTFGVE------------H 237

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q      +G+++ F             L G   V N L    L  + G++  L L+ L
Sbjct: 238 AAQFSVAQHQGREYLFAHDEAVMACDELSLVGRHNVANVLTVLALLDSAGVNFRLALDAL 297

Query: 337 EKLHVVPGRFEFVGTN 352
           +    +  R + V  N
Sbjct: 298 KSYTGLTHRCQVVVDN 313


>gi|256425925|ref|YP_003126578.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
 gi|256040833|gb|ACU64377.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
          Length = 446

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 39/280 (13%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA R Y K  + ++A+TG++GKS+  +    I + +GL +  +G      S+A+    T 
Sbjct: 96  FAYR-YSKDSK-VIAITGSNGKSTTTALTFNIFETAGLHAAMVGNIGL--SYAR-QIATA 150

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P+  Y+                VE SS  LD  R    K       N+  DH+D +  + 
Sbjct: 151 PADYYI----------------VEVSSFQLDDIR--DFKPNVAILLNITPDHLDRYDYKM 192

Query: 225 A-YFNAKMRLFEELLPKESPAIIYADD-----AYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           A Y  +K R+     P++    +Y  D      Y KE    +      ++    QG F+ 
Sbjct: 193 ANYVASKFRIAMNQGPEDY--FVYCIDDPEITNYLKEHTIYSTTIPFTIMEPLKQGGFMA 250

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            ++V    N + + +S+      +   L G+  +YN++ A      + I    + E L  
Sbjct: 251 NEQVNIQVNDEPMIVSM------YDLALKGKHNLYNSMAAGIAGRTMDIRKEKIRESLTS 304

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIR 377
              +  R E+V T  RG     D   T+ NSL   L+++ 
Sbjct: 305 FKSLEHRMEYVAT-VRGVDFINDSKATNVNSLWFALESME 343


>gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
 gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 10/108 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-EAIVVSSAYSLQDFSATIRSNTP 91
           VS+D+R+I    I+ A+ G   +G+ F  +A+A+GA  A++   AY + D          
Sbjct: 15  VSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIAD---------K 65

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            L+VD+    L   A+    K    ++ +TG++GK++    ++ +  +
Sbjct: 66  TLLVDDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQ 113


>gi|307707460|ref|ZP_07643942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
 gi|307616412|gb|EFN95603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
          Length = 457

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 75/380 (19%), Positives = 155/380 (40%), Gaps = 46/380 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F     + ++ +   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NNVSLFA----DAQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIEIAFENGA-AVTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       +N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 70  KKV---------ANHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194
           +      ++++   T        +N +  P  +           +G   + +E    H  
Sbjct: 121 LLS----TTYKTYKTQG----NYNNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 165

Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           D H L  +     +   L G  H+ + + +      KM++ + +    S +++ A    +
Sbjct: 166 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM---SSNSLLLAP---A 219

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +++       +V+  G QG  + +  +  I  K  +T      +     P+ G++   
Sbjct: 220 DPIVEDYLPTDKKVVRFG-QGAELEITDL--IERKDSLTFKANFLEQALDLPVTGKYNAT 276

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NA++A+ + +  G+    + +  + L +   R E+    + G  I  D Y     ++++I
Sbjct: 277 NAMIASYVALQEGVSEEQIRQAFQNLELTRNRTEWKKA-ANGADILSDVYNANPTAMKLI 335

Query: 373 LKNIRTITS---GRIIVVFG 389
           L+    I +   G+ I V  
Sbjct: 336 LETFSAIPANEGGKKIAVLA 355


>gi|256825187|ref|YP_003149147.1| cyanophycin synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688580|gb|ACV06382.1| cyanophycin synthetase [Kytococcus sedentarius DSM 20547]
          Length = 908

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 21/152 (13%)

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSL----EMILKNIRTITSG----RIIVVFGCG 391
           ++ PGR   V  N  G  +YVDYAH    L    E +     ++  G    + IVV G  
Sbjct: 731 YLSPGRLNRVEVN--GAEVYVDYAHNPAGLQALSEFVANRAMSLAEGGEEPQRIVVLGAA 788

Query: 392 GDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEI----------IHGIPGFI 440
           GDR       +G++A    D  ++  D+N R  +P +    I                 I
Sbjct: 789 GDRRDSDVRELGEVAAQQFDTVVIREDENLRRREPGEAAGLIREGVDAAVAAGARATTVI 848

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           E+ + ++A + A+   N  D++ +A   H  V
Sbjct: 849 EEWDEVQACKVAMSHANPGDIVAMAVDQHADV 880


>gi|304316506|ref|YP_003851651.1| FolC bifunctional protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778008|gb|ADL68567.1| FolC bifunctional protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 425

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 175/437 (40%), Gaps = 95/437 (21%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L +DN ++ L      ++  +P++ L    V GT+GK S+ +F+  I   +G   F++G 
Sbjct: 20  LGLDNIKRLL------MHMGNPQSNLKFIHVAGTNGKGSICAFINSILFEAG---FKVGL 70

Query: 150 TST--ISSFAQDNRLT-------------------------------TPSPIYLAKALSY 176
            ++  +  F +  R+                                T   I  A A  Y
Sbjct: 71  YTSPYLEEFEERMRINNQNIPKDKLIYYVEYIKPIIEKLVVEGYNHPTEFEIITAIAFKY 130

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              + V  V +E    G    R D   +I  S  ++    IDY    +     +   FE+
Sbjct: 131 FCDENVDFVVLEVGLGG----RFDATNVIDSSLVSVITT-IDYDHMDKLGDTLEKIAFEK 185

Query: 237 L-LPKESPAII--YADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----- 286
             + KE+  ++  Y  D   K  E + R  NA   V+ +      + +K+  + H     
Sbjct: 186 AGIIKENGTVVSFYQKDEALKVIEEVSRFKNASLSVMDIND----VKIKESNSNHQVFDY 241

Query: 287 -NKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            N + + IS+ GK            Q+YN   A++A    I  GI+   + E + K  ++
Sbjct: 242 KNYKNLKISIIGK-----------HQIYNASLAVMAVEKLIQYGIN---ISEDVIKRGLI 287

Query: 343 ----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGR E +   S+   I +D AH    +  + + +   T  R+I+V G   D+D   
Sbjct: 288 NAKWPGRIEVI---SKLPLIVIDGAHNPQGMAALKEALNLFTYNRLILVIGMLKDKDTDS 344

Query: 399 RPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              M K+ +  AD+ I T   + R+   E++  +I +      E  N  +AI  A++   
Sbjct: 345 ---MLKLIVPEADLIITTKPISDRAYTAEELSQKIAYDDVLHFE--NIDDAINEALKSAG 399

Query: 458 KQDVLVVAGKGHETVHI 474
           K D+++  G  +   H+
Sbjct: 400 KNDLILFCGSLYMIGHV 416


>gi|148657880|ref|YP_001278085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           sp. RS-1]
 gi|148569990|gb|ABQ92135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseiflexus sp. RS-1]
          Length = 490

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 30/236 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS----SAYSLQDFSATI 86
           +E   DSR   +  +FVA+ G + DGH F+  A A+GA   +V     S  SL+   A I
Sbjct: 37  SEAVIDSRQATSECLFVALRGERVDGHEFLADAAARGARGALVRRDKLSNLSLERPYAVI 96

Query: 87  --------RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      TP    ++ VD+ +  L+  A+   GK+   ++ VTG+ GK+S      
Sbjct: 97  DPVTGEGLEQATPDSVLLIAVDDPQAALNRLAAYHRGKYHPVVIGVTGSVGKTSTKEVTA 156

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + QR    SF+     +  S+  +  L    PI L   L   +   V  + +     G 
Sbjct: 157 SVLQR----SFRT--LKSPRSYNSEASL----PIVL---LKLTADHQVAVLEMGMYGPGE 203

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             H     +   G  TN+G  H++   + +A   AK  L  + LP +  AI+  DD
Sbjct: 204 IAHLAALARPRLGIVTNVGPSHLERMGSIEAIQRAKSEL-PQALPDDGFAILNIDD 258


>gi|94969647|ref|YP_591695.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551697|gb|ABF41621.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 123/309 (39%), Gaps = 31/309 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRS 140
           +A  R N  +  V + R   +  A  L+ +  H   ++A+ GT GK++  S +  I   +
Sbjct: 72  NAISRGNVELEYVLDRRIPFTSMAELLHREFLHDREVIAIAGTHGKTTTTSMLSWIFHHA 131

Query: 141 GLS-SFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G + SF IG  +    SSFA            +A    ++        +          +
Sbjct: 132 GRNPSFLIGGIAENFGSSFA------------VADGAEFIIEGDEYDTAFFDKGPKFLHY 179

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               + L A  F     DH D ++       A  RL   L+P+    + +       E +
Sbjct: 180 FPKSLILTAVEF-----DHADIYKDLDEVKTAFKRLVN-LVPRSGCILAWDGHPNVDECV 233

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDF-DFLFPLPGEFQVYN 314
            +A    C+V   G+  +    + V   H  ++ +  V   G+ +  F FP+ G++ V N
Sbjct: 234 TKAF---CKVERYGFTAR-ADWRIVDVEHAPEKTSWRVLRNGEPWAHFEFPIAGDYNVLN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  AA +     ID+  + E L     V  R E V    +G  I  D+AH   ++   LK
Sbjct: 290 ATAAAAMAAHYAIDTDAIAEALHHFKSVKRRLE-VKAEVKGITIIDDFAHHPTAIAETLK 348

Query: 375 NIRTITSGR 383
            +R+  +GR
Sbjct: 349 ALRSRYAGR 357


>gi|163751822|ref|ZP_02159038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
 gi|161328307|gb|EDP99468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
          Length = 449

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 25/136 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA R        ++ +TG++GKS+V + V ++ + +GL+ + +G    I      + 
Sbjct: 97  VELFA-RAVKNSSSCVIGITGSNGKSTVTTLVGEMAKAAGLN-YAVGGNIGIPVL---DL 151

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           L +P  +Y+                +E SS  L+  H L+    IA +  N+  DH+D +
Sbjct: 152 LQSPIDLYI----------------LELSSFQLETTHSLN---CIAATCLNISEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEE 236
           +  +AY  AK+ L+++
Sbjct: 193 RDLEAYRQAKLSLYDQ 208


>gi|109892713|sp|Q2Y639|MURC_NITMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 493

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 94/266 (35%), Gaps = 48/266 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S +  +   +G+      PT  I                L  A S+ 
Sbjct: 108 IAIAGTHGKTTTTSLITSVLAEAGMD-----PTFVIGG-------------RLEAAGSHA 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + VEA         L  +  +    TN+  DH+D ++            F + 
Sbjct: 150 KLGRGEFIVVEADESDASFLHLQPVLAVV---TNIDADHMDTYEHDFGKLKQAFVDFVQH 206

Query: 238 LPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           LP    A++  DDA+  E+M            +  A  R   + +    +H   +  ++ 
Sbjct: 207 LPFYGMAVLCVDDAHVLEIMPAITKPVTTYGLSETAQVRAADIRHSEGQMHFTALIGVNG 266

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K         +    +  LPG   V NAL A  +C  +G+    ++  L     V  RF+
Sbjct: 267 KT--------RKLKIVLNLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQ 318

Query: 348 FVG----TNSRGGR-----IYVDYAH 364
             G    T+   GR     +  DY H
Sbjct: 319 RYGEIPLTDPETGRNGSFTLIDDYGH 344


>gi|326531704|dbj|BAJ97856.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 503

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/249 (19%), Positives = 113/249 (45%), Gaps = 19/249 (7%)

Query: 13  ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           EL+++  + P+     ++  ++ V SD+  + AG +FV +    E G   + +A  +GA 
Sbjct: 226 ELLDESKLVPVAVTGDQDVALSGVQSDATLVAAGDLFVCV---GESGLAGLTEADKRGAV 282

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A+V        D   T+     +++VD+    L +  + LYG+  ++  ++ +TGT G +
Sbjct: 283 AVVADQDV---DIEGTLACRA-LVIVDDITAALRVLPACLYGRPSKDMAVIGITGTDGVT 338

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP----IYLAKALSYLSSQGVT 183
           + +  V+ + +  G+ +  +G      +F  +     P+     + + K ++ +   G  
Sbjct: 339 TASHLVKAMYEAMGVRTGMVGVLGAY-AFGTNKLDAQPAASGDSMAVQKLMATMLHNGAE 397

Query: 184 HVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKE 241
            V +E ++  +    +D  I       TN+   +++   T + Y ++   LF  ++ P+ 
Sbjct: 398 AVVLEKTTDEMLPSGVDSEIDYDIAVLTNVRHGNLEASMTYEGYMSSMASLFSRMVDPER 457

Query: 242 SPAIIYADD 250
              ++  DD
Sbjct: 458 HRKVVNIDD 466


>gi|320157425|ref|YP_004189804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
 gi|319932737|gb|ADV87601.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 119/302 (39%), Gaps = 46/302 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      +    G+              A    +  P       AL  
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKC------------AIGGNIGVP-------ALDL 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  +   +V +E SS  L+      + L+A +F NL  DH+D +Q    Y  AK+R+F+ 
Sbjct: 151 LEQEVELYV-LELSSFQLE--TTSSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVT 292
                   ++  DD  +             +++ G      G   H  +    +N+Q + 
Sbjct: 208 ----AKHGVVNRDDRQTYPETSHGQQL-LALVTFGSDDKEFGVMSHQGESWLSYNQQPIL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            S E K       L G+  V N LV   L    GID    L  L+    +  R + V  N
Sbjct: 263 ASRELK-------LVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLTHRCQVVADN 315

Query: 353 SRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
              G  +V+ +  +N  S +  L  +    +G++ ++ G  G        +PI+ ++ L 
Sbjct: 316 R--GIKWVNDSKATNLASTQAALSGLN--CAGKLYLLVGGDGKGADFSPLKPILAQLNLQ 371

Query: 409 LA 410
           L 
Sbjct: 372 LC 373


>gi|224540980|ref|ZP_03681519.1| hypothetical protein CATMIT_00131 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526131|gb|EEF95236.1| hypothetical protein CATMIT_00131 [Catenibacterium mitsuokai DSM
           15897]
          Length = 436

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 49/320 (15%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++V +A+   +       + P + + +   FL+    +L   H    + + GT GK+S  
Sbjct: 62  VIVGNAFDRSNEEVAAAEDNPNVTIHHYYDFLA----KLMDDHI--TIGIAGTHGKTSTT 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                + +    ++  IG  +                 Y  K   Y  ++       E  
Sbjct: 116 GMAYHLFKDYDKTNVLIGDGTG----------------YATKGAKYFIAE-----CCEYK 154

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYAD 249
            H L  H             N+  DH+DY ++ + Y  +    FE+   +   AI I+ D
Sbjct: 155 DHFLWYHP------DYSYINNIEMDHVDYFKSMEQYEQS----FEKYANQAKKAIVIWGD 204

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
           D +   +     N   RV+  G + G  +  K V          + + G  F  F  P  
Sbjct: 205 DPHLPHL-----NYTKRVVKFGVKDGNDVQAKNVINNEKGLSFDVYIYGDLFGHFTLPFY 259

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTS 366
           G   +YN L    L    G+D   +   L        R+        G  +YV DYAH  
Sbjct: 260 GMHTLYNTLGVITLGYLEGMDFDYMQSQLSTFKGTKRRY---AVKEVGNNVYVDDYAHHP 316

Query: 367 NSLEMILKNIRTITSGRIIV 386
            +++ +++  RT   G+ IV
Sbjct: 317 TAIKYVIEETRTRFPGKQIV 336


>gi|295094720|emb|CBK83811.1| UDP-N-acetylmuramyl pentapeptide synthase [Coprococcus sp.
          ART55/1]
          Length = 87

 Score = 42.7 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
          +I +++ DSR +  G +FV   G + DGH +I  A+A+GA  IVV+
Sbjct: 22 QITDLADDSRDVTQGTLFVCRRGARTDGHRYIDDAVARGAACIVVT 67


>gi|254719461|ref|ZP_05181272.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella sp. 83/13]
 gi|265984467|ref|ZP_06097202.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. 83/13]
 gi|306839240|ref|ZP_07472057.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. NF 2653]
 gi|264663059|gb|EEZ33320.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. 83/13]
 gi|306405787|gb|EFM62049.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. NF 2653]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 14/188 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  +   R+++
Sbjct: 181 TNIDPEHLDHYGNFDA-VRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDR--RIIT 237

Query: 270 VG----YQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLC 322
            G     + +FI+ +   A      V  S +G+     D   P+PG   V NA  A  + 
Sbjct: 238 YGSNPQAEVRFINQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATAAIAVA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI S  +   L     V  RF   G+ + G  I+ DY H    +  +LK  R  TS 
Sbjct: 298 HELGISSDDIRRGLGSFGGVKRRFTHTGSWN-GVEIFDDYGHHPVEIRAVLKAAREATSQ 356

Query: 382 --GRIIVV 387
             GR++ +
Sbjct: 357 AGGRVVAI 364


>gi|192361367|ref|YP_001983389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
 gi|190687532|gb|ACE85210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
          Length = 463

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 123/295 (41%), Gaps = 48/295 (16%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R + AG +F+A+ G + D H F+ QA A+   A+VV      + F+  I+   P 
Sbjct: 37  VSTDTRTLDAGDLFIALRGERFDAHDFLAQAEARQPCAMVV------EKFNPAIQ--LPQ 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV ++   L   A+         ++A+TG+SGK++V + V  I    G          T
Sbjct: 89  LVVADSTLALGQVAALNRSLFTGPLVAITGSSGKTTVKTLVASILGECG---------ET 139

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           +++    +N +  P  +     L          + + AS      +     K       N
Sbjct: 140 LATRGNLNNHIGVPLTL-----LELEERHQFAVIEMGASGPSEIAYACSLAKPQVAMINN 194

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH---------- 261
           +   HI+   +     NAK  ++  L+     A++  DDA++ + +++            
Sbjct: 195 VMPAHIEGFGSIAGVANAKSEIYGGLVTG-GIAVVNIDDAFAPQWIQQLAGKKTLTVSLA 253

Query: 262 --NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +A CR  ++ Y  +  HL     IH +Q++ I +  +         GE  V N
Sbjct: 254 NPDANCRAEAIEYASE--HLAFDLLIH-RQRLRIILNAQ---------GEHSVRN 296


>gi|157963621|ref|YP_001503655.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella pealeana ATCC
           700345]
 gi|189082500|sp|A8H983|MURC_SHEPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157848621|gb|ABV89120.1| UDP-N-acetylmuramate--alanine ligase [Shewanella pealeana ATCC
           700345]
          Length = 489

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 16/177 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D ++            F   LP    A++  DD   +E++ R    G R+++
Sbjct: 195 TNIEADHMDTYEGDLEKLKTTFVDFLHNLPFYGVAVVCIDDPIVRELIPRI---GRRIVT 251

Query: 270 VGYQGKFIHLKKVCAIHNKQ-----QVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCI 323
            G    F     V A+  KQ     + T+   G  D      LPGE  V N+L A  +  
Sbjct: 252 YG----FSEDADVRALDFKQTGYSCEFTVRRAGMDDLQLSVNLPGEHNVLNSLAAIAVAT 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGG-RIYVDYAHTSNSLEMILKNIR 377
              I+   ++  L     +  RF+ +G  T ++G  ++  DY H  + +   +K  R
Sbjct: 308 EDEIEDEAIITALADFQGIGRRFQQIGEFTTAKGEIKLVDDYGHHPSEVAATIKAAR 364


>gi|113869225|ref|YP_727714.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha H16]
 gi|123032665|sp|Q0K6M5|MURC_RALEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113528001|emb|CAJ94346.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
          Length = 477

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 41/292 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A S  +       +  I VV        L   RL     +  +A+ GT GK
Sbjct: 64  GANAVVVSTAVSGDNPEVLAARSKRIPVVPRAVMLAELM--RL-----KQGVAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  +    GL  +F IG    ++S   + RL T   I                 
Sbjct: 117 TTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIV---------------- 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              A +   D   L+   +I    TN+  DH+D +    A        F + LP    A+
Sbjct: 159 ---AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------- 298
           +  DD   +E++         V+  G+  +   ++ V A     Q+  +V+ +       
Sbjct: 215 LCVDDPNVREILPFVSKP---VVRYGF-AEDAQIRAVDARAVDGQMHFTVQRQLNGHTEP 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             + +  LPG   V NAL A  +   + +  A +++ L + H V  RF+  G
Sbjct: 271 PLEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYG 322


>gi|206561803|ref|YP_002232568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
 gi|198037845|emb|CAR53789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
          Length = 468

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 147/375 (39%), Gaps = 32/375 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+DSR +  G +FVA+ G + D H F+          +    A +     A      
Sbjct: 27  DRVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPAGVAM 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P++    TR  L   A     + P  ++AVTG++GK++V   +  I   +      +G  
Sbjct: 79  PMIAGGETRAALGALAHGWRMRFPLPVVAVTGSNGKTTVKEMIASIFAAA------VGAD 132

Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           + +++    +N +  P  +    A   L+    G+ H      +  L +     + L+  
Sbjct: 133 ARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNH---PGETEVLARLTAPTVALV-- 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A       +    LP +  A+  ADDAY+   + R    G R+
Sbjct: 188 --NNAQREHQEFMATVEAVALEHAAVIHA-LPPDGVAVFPADDAYAG--IWRVAATGNRI 242

Query: 268 LSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L    +  +  +  ++    +  ++ I              GE    NAL A    +  G
Sbjct: 243 LDFALHDAERQNDAQIVGRMHGDELAIDTPAGAVTVRLRALGEHNARNALAATAAALGAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
           +  + + + LE    V GR +       S  G   VD  + +N  S+   +  +    + 
Sbjct: 303 VALSAIRQGLEAFEPVKGRLQVKPASVGSLAGATVVDDTYNANPDSMRAAIDVLAAHPAP 362

Query: 383 RIIVVFGCGGDRDQG 397
           R++V+   G   D+G
Sbjct: 363 RVLVIGDMGEVGDEG 377


>gi|89074172|ref|ZP_01160671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium sp. SKA34]
 gi|89050108|gb|EAR55634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium sp. SKA34]
          Length = 446

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 31/169 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L      + +   I +V +    + LFA  +     + ++A+TG++GKS
Sbjct: 69  ADLIVASPGIALATPELVVAAEAGIEIVGD----IELFAREV----DKPVVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G++   +G    I  FA               AL  L+ Q   +V +
Sbjct: 121 TVTSLVGEMAKEAGVN---VGVGGNI-GFA---------------ALDMLAQQHALYV-L 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           E SS  L+      ++L A  + NL  DH+D Y      Y  AKMR+F+
Sbjct: 161 ELSSFQLETTT--SLELTAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFD 207


>gi|154483291|ref|ZP_02025739.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
 gi|149735801|gb|EDM51687.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
          Length = 460

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 131/350 (37%), Gaps = 69/350 (19%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAV 120
           I  G +A  V++   +  ++A ++++ P LV         L  +   G   K+    + V
Sbjct: 57  IYYGQKASNVAADTEVLIYTAAVKADNPELVAATEMNIPLLTRAEFLGQIMKNYHTAIGV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----------SSFAQDNRLTTPSPIYL 170
           +GT GK++  S + QI   +        PT  +          +     + + T +  Y 
Sbjct: 117 SGTHGKTTTTSMLSQIMLEA-----NTDPTILVGGIMPAINGNTRIGHSDNMITEACEYT 171

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS+  + G+                            N+  DH+D+ +         
Sbjct: 172 NSFLSFAPTIGI--------------------------ILNVAADHLDFFKDLDD-IRHS 204

Query: 231 MRLFEELLPKESPAIIYADDA---YSKEVMKRAHNAGCRVLSVG-------YQGKFIHLK 280
            R + EL+P+    +I +D     Y  E +K      C V++VG       Y    I   
Sbjct: 205 FRRYAELIPEGGALVINSDIDNLDYFTEGLK------CNVITVGSDPEKSMYSAANITYD 258

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +         + ++ E K    +  + GE  +YN+L +      +GID   ++  L++  
Sbjct: 259 EFA--RGSYDLVVNGETKTH-IVLKVTGEHNIYNSLASIAAAHFMGIDDNSIIAGLQQYG 315

Query: 341 VVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVF 388
               RF++ G   + G I V  DYAH  + +   +K  +     ++ VVF
Sbjct: 316 GTDRRFQYKG---KLGDITVIDDYAHHPDEIRATIKTAKHYPHKKMWVVF 362


>gi|254495866|ref|ZP_05108776.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
 gi|254354902|gb|EET13527.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
          Length = 458

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 130/332 (39%), Gaps = 42/332 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ +V SSA  + +          I V+       ++ A  +  +H    +AV GT G
Sbjct: 62  QGADVVVRSSAVGMNNPEVVAAREQLIPVIPRA----AMLAELMRFRHG---IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    GL  SF IG    ++S   + +L   SP ++ +A    +S     
Sbjct: 115 KTTTTSLVSSLLAEGGLDPSFVIG--GKLNSAGVNAKLGQ-SPYFVVEADESDAS----- 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +K +    TN+  DH+  ++            F   LP    A
Sbjct: 167 --------------FLFLKPMMAIVTNIDADHMSTYEDNFDKLRTTFLEFLHHLPFYGLA 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGK--DF 300
           ++  DD   + +++         L+ G+  +  H + V    N+   + T++        
Sbjct: 213 VVCTDDPEVRNILQSIERP---TLTYGFNDE-AHYRAVDWTQNELLSEFTVARPAPYPPL 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRI 358
           +  F  PG   V NAL A  +   +G+  A ++  L K   V  RF+ +G     RG  +
Sbjct: 269 NICFQYPGRHNVLNALAAIAIATELGVSDAAIVSALAKFQGVGRRFQMLGEKHFERGSAL 328

Query: 359 YV-DYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
            V DY H    +   +   R +  + R++ VF
Sbjct: 329 VVDDYGHHPQEIFSTIDAFRRVWPNKRLVHVF 360


>gi|156973222|ref|YP_001444129.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi ATCC
           BAA-1116]
 gi|166224748|sp|A7MXR2|MURC_VIBHB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156524816|gb|ABU69902.1| hypothetical protein VIBHAR_00903 [Vibrio harveyi ATCC BAA-1116]
          Length = 485

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 113/282 (40%), Gaps = 40/282 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F  L +  ID+             
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHN---------- 223

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + + 
Sbjct: 224 -----LPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSEDADVRIEDYHQEGQQGKF 275

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  EG+ + D    +PG     NA  A  +     I    +L+ +        RF+ +G
Sbjct: 276 TVVREGRANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTQGTGRRFDHLG 335

Query: 351 TNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               G     +  DY H    +++ +   R+     R++++F
Sbjct: 336 EFDTGNGHAMLVDDYGHHPTEVDVTIHAARSGWQDKRLVMIF 377


>gi|124265656|ref|YP_001019660.1| UDP-N-acetylmuramate--L-alanine ligase [Methylibium petroleiphilum
           PM1]
 gi|166224702|sp|A2SCY6|MURC_METPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|124258431|gb|ABM93425.1| UDP-N-acetylmuramate--L-alanine ligase [Methylibium petroleiphilum
           PM1]
          Length = 469

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 129/334 (38%), Gaps = 47/334 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GAEA+V S+A         ++ + P ++   +R+   +  + +  +    +  +A+ GT 
Sbjct: 64  GAEAVVTSTA---------VKGDNPEVIAARSRRVPVVPRAVMLAELMRLKQGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  +   +GL  +F IG    ++S   ++RL                     
Sbjct: 115 GKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANSRLGAGD----------------- 155

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++ VEA     D   L+ + +++   TN+  DH+D +             F   +P    
Sbjct: 156 YIVVEADES--DASFLNLLPVLS-VVTNIDADHMDTYGHDLGRLKHAFLEFLHRMPFYGA 212

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ-----QVTISVEG 297
           AII  DD   + ++         V+S G+ +   I    V A+   Q     Q    V  
Sbjct: 213 AIICGDDPGVRSIIPMISRP---VVSYGFGEDAQIRAVDVLALPGGQMRFTAQRRNGVVM 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRG 355
            D      LPG   V NAL    +   + +  A V + L     V  RF+  G      G
Sbjct: 270 PDLPITLNLPGRHNVLNALAVIAVAAELELPDAPVQKALAAFDGVGRRFQRYGELPTPAG 329

Query: 356 GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
           GR  +  DY H    +  ++   R    GR +V+
Sbjct: 330 GRFTLIDDYGHHPVEMAAVIAAARGAFPGRRLVI 363


>gi|198282524|ref|YP_002218845.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667206|ref|YP_002424714.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|226706334|sp|B5ELC2|MURC_ACIF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711856|sp|B7J3V1|MURC_ACIF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198247045|gb|ACH82638.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519419|gb|ACK80005.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 464

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 103/279 (36%), Gaps = 37/279 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  I    GL      PT     F    RL +        +  YL
Sbjct: 108 IAIAGTHGKTTTTSLVASILGAGGLD-----PT-----FVIGGRLKSAGTHAALGSGEYL 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++              D+     + L  +    TN+  DH++ +             F 
Sbjct: 158 VAEA-------------DESDASFLYLSPVMAVVTNIDADHMETYGGSLDNLRGAFLQFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK----VCAIHNKQQV 291
           + LP    A++  D+A    ++         VL  G+ G    L+     V  I ++  V
Sbjct: 205 QRLPFYGLAVLCTDEAVVAGLIPELRTP---VLRYGF-GADADLQARDVTVQGIGSRFAV 260

Query: 292 TISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              V+     +L     +PG   V NAL A G+   +GI  + +   L     V  RFE 
Sbjct: 261 WRRVDSDYVHWLDVELGIPGRHNVLNALAAIGIASKVGIPESTIATALADFRGVGRRFEL 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           VGT   G  +  DY H    +   +   R++   R +VV
Sbjct: 321 VGTFD-GITVVDDYGHHPREIAATIAAARSVWPERPLVV 358


>gi|316933187|ref|YP_004108169.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
 gi|315600901|gb|ADU43436.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
          Length = 468

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 132/337 (39%), Gaps = 54/337 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT
Sbjct: 65  KGADVLVVSTA---------IKRDNPELLAARAQRIPVVRRAEMLAELMRLKSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +     L    I     I+++  + RL     +               
Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVIN-GGIINAYGTNARLGAGDWMV-------------- 160

Query: 184 HVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              VEA     D+     +KL A     TN+  +H+D+ +T  A  +A  R F E +P  
Sbjct: 161 ---VEA-----DESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             A++  D    + ++ +  +           A  R+L +   G     K   A  +++ 
Sbjct: 212 GFAVMCIDHPVVQTLVGKIEDRRIITYGENPQADARLLDLTPSGGGSTFK--VAFRDRKA 269

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T     +  D + P+PG     NA  A  +   +G+    + + L     V  RF   G
Sbjct: 270 GTAH---EIADLMLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               G  I  DY H    +  +LK  R  T+G++I V
Sbjct: 327 -EWNGVTIIDDYGHHPVEIAAVLKAARQSTAGKVIAV 362


>gi|260550189|ref|ZP_05824402.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
 gi|260406717|gb|EEX00197.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
          Length = 482

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 8/192 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRV- 246

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  V++ G+ +   I    V     +   T+  +G++        PG   V NAL A 
Sbjct: 247 --GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTINQPGLHNVLNALAAI 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
           G+    G+    +   L+    V  RF+  G    G    ++  DY H    +E  +K  
Sbjct: 305 GVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDDYGHHPKEVEATIKAA 364

Query: 377 RTITSGRIIVVF 388
           R     R +V+ 
Sbjct: 365 RQSHPDRRLVML 376


>gi|166713309|ref|ZP_02244516.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 135/345 (39%), Gaps = 53/345 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           + P  I+  A  +VV +A S        R N  +  V+D +R++ S    L    L G+ 
Sbjct: 54  YAPSNISPDATDVVVGNALS--------RGNPAVEAVLDASRRYTSGAQWLAEQVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + LAV GT GK++  + +  + + +G +     P   I   A+D              
Sbjct: 105 --DTLAVAGTHGKTTTTTILSYLLEAAGRA-----PGFLIGGVAEDF------------G 145

Query: 174 LSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +S    QG   V VEA  +       + +    + +     NL  DH D      A    
Sbjct: 146 VSARLGQGREFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAI--- 201

Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCA 284
             R F  L+   P     I+  +DA+  EV+      GC   V   G+        ++ A
Sbjct: 202 -QRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTPVERFGFDASLDWSARLIA 256

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   +    +     +PL G   V N L A     A+G+D A ++  L     V  
Sbjct: 257 ADGSAFAVLHRGAEVGHVQWPLLGRHNVLNGLAALAAVHAVGVDPATLMPALAHFQSVKR 316

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           R E +G+ +RG  +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 317 RLEVIGS-ARGITVYDDFAHHPTAIATTLQGLRARVGAARVVVAM 360


>gi|126643342|ref|YP_001086326.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ATCC 17978]
          Length = 448

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 8/192 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 154 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRV- 212

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  V++ G+ +   I    V     +   T+  +G++        PG   V NAL A 
Sbjct: 213 --GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTINQPGLHNVLNALAAI 270

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
           G+    G+    +   L+    V  RF+  G    G    ++  DY H    +E  +K  
Sbjct: 271 GVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDDYGHHPKEVEATIKAA 330

Query: 377 RTITSGRIIVVF 388
           R     R +V+ 
Sbjct: 331 RQSHPDRRLVML 342


>gi|262341152|ref|YP_003284007.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272489|gb|ACY40397.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 453

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 101/236 (42%), Gaps = 33/236 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           I+++TG++GK++ +S + +I +R G+    +G    I  SF+++  +     +Y+     
Sbjct: 108 IISITGSNGKTTTSSIIYKILKREGI---DVGIAGNIGRSFSKE--VIKKKDVYV----- 157

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +E SS  LD  ++   +       N+  DH+D +   ++Y ++K ++  
Sbjct: 158 -----------LEVSSFQLDDCQI--FRSNIAVLLNITEDHLDRYDDIESYMHSKFKI-A 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKR----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L  KE   I   DD   ++ +K+    +H     +    + G +I   K+   + K Q 
Sbjct: 204 TLQKKEDIFIYNHDDPLIRKGLKKYPIFSHCIPFSIKEELHIGAYIKNNKIFIRNQKNQE 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                 KD     PL G+  +YN + +  +     +    ++  + KL  +  R E
Sbjct: 264 ICFFNVKD----IPLIGDHNLYNIMASLMISEIFNVKKKSIVSTILKLKPIEHRME 315


>gi|121728372|ref|ZP_01681401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|147674702|ref|YP_001217905.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O395]
 gi|262168384|ref|ZP_06036081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
 gi|172047587|sp|A5F5N1|MURD_VIBC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121629363|gb|EAX61794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|146316585|gb|ABQ21124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
 gi|262023276|gb|EEY41980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
          Length = 440

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 104/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 100 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q    Y
Sbjct: 147 ------ALDLISPDVELYV-LELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMGDY 197

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+        A++ ADD  +       H A  +V++ G             + 
Sbjct: 198 RQAKLRIFDH----AETAVVNADDTQTFP----DHAAHLQVVTFG-------------VE 236

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 237 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVTNVLTVLALLDSAGVNFRLALDA 296

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 297 LKSYTGLTHRCQVVADN 313


>gi|206561798|ref|YP_002232563.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           J2315]
 gi|229486475|sp|B4E6J1|MURC_BURCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198037840|emb|CAR53784.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           J2315]
          Length = 465

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 126/312 (40%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    ++   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARAKRVPIVQRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG
Sbjct: 208 PFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREG 264

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR 354
           +     +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   ++ 
Sbjct: 265 RAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSAD 324

Query: 355 GGRIYV--DYAH 364
           GG+  +  DY H
Sbjct: 325 GGQYTLIDDYGH 336


>gi|327404532|ref|YP_004345370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
 gi|327320040|gb|AEA44532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
          Length = 427

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 30/235 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRSNTP 91
           + +D+R IQ G +F  + G   DG+ F  +AI QGA A VV +  Y ++    TI  +  
Sbjct: 14  IETDTRKIQKGSLFFCLKGLNFDGNKFAQEAIQQGAIAAVVDNPEYHIE--GKTILVDDT 71

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L + N  K       R   + P  I+ +TG++GK++    +  +        F  G   
Sbjct: 72  LLALQNLAKH-----HRCQFQIP--IIGITGSNGKTTSKELISVVLSTQLHVHFTSGNL- 123

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IAGSFT 210
                  +N +  P  +     L   ++  +  + + A+  G D   L  I L   G  T
Sbjct: 124 -------NNHIGVPLTL-----LQLNTTHEIAVIEMGANKPG-DIKELVEIALPTHGIIT 170

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKEVMKRAHN 262
           N+GR H++  ++ +     K  LF  L   ++   I+A   D+  +  +    HN
Sbjct: 171 NIGRAHLEGFKSLEGVIKTKTELFNFL--AQNRGHIFANKEDETITSHLPSNTHN 223


>gi|237742552|ref|ZP_04573033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           4_1_13]
 gi|229430200|gb|EEO40412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           4_1_13]
          Length = 454

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 49/248 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 115 IIAITGTNGKSTTTAKISDMLNHAGYRAAYAGN--------------------IGRSLSE 154

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ + +   Y++ K    
Sbjct: 155 VLLKEKDLDFISLELSSFQLEN--IENFKPYISMIINMGPDHIERYNSFDEYYDTKFN-- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQV 291
             +   ++  + + ++    E+ KRA     + +SV    K   F+   K+C  H +  +
Sbjct: 211 --ITKNQTEDLYFIENIDDVEIEKRAKQIKAKRISVSKFKKADIFVKNDKIC--HGENSI 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---------ALVLEHLEKLHVV 342
                  D D L  L G   + N L        + ID          A  LEH  +L   
Sbjct: 267 I------DVDKL-SLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFN 319

Query: 343 PGRFEFVG 350
            G+ +F+ 
Sbjct: 320 YGKVKFIN 327


>gi|218458612|ref|ZP_03498703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
          etli Kim 5]
          Length = 81

 Score = 42.7 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
          I  +S DSR I  G  F AI G++ DGH +   A+A GA  +VVS A
Sbjct: 26 ITGISIDSRSISPGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA 72


>gi|30316124|sp|Q9F1N2|MURD_SHEVD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|11761333|dbj|BAB19200.1| MurD [Shewanella violacea]
          Length = 449

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 25/136 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +GL+ + +G    I      + 
Sbjct: 97  VELFARAIKDRSP-CVIGITGSNGKSTVTTLVGEMAKAAGLN-YAVGGNIGIPVL---DL 151

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           L  P  +Y+                +E SS  L+  H L+    I+ +  N+  DH+D +
Sbjct: 152 LQKPVDLYI----------------LELSSFQLETTHSLN---CISATCLNISEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEE 236
              +AY  AK+ L+++
Sbjct: 193 SDLEAYRQAKLALYDQ 208


>gi|310814884|ref|YP_003962848.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
 gi|308753619|gb|ADO41548.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
          Length = 470

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 28/241 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+++  T +A        F   +P    A++  D    + +  R  +   RV++
Sbjct: 191 TNIDPEHMEHWGTIEA-LRKGFTDFVTQIPFYGLAVLCTDHPEVRALAARVTDR--RVVT 247

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G+  +   ++ V   + K Q    +   +G       P+PG+  V NAL A  +   +G
Sbjct: 248 FGFN-EDADIRAVNLTYEKGQAHFDIALPDGVIAGCTLPMPGDHNVSNALAAVAVARHLG 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D   +   L     V  RF  V     G  I  DY H    +  +++  R  TSG+++ 
Sbjct: 307 MDHDAISAALAGFAGVGRRFTKV-AEVDGITIIDDYGHHPVEIAAVMRAARQATSGKVVA 365

Query: 387 VFGCGGDRDQGKRPIMGKIA---------LDLADIAIVTDDNPRSED--PEKIRAEIIHG 435
           V        Q  R    ++A          DLAD   +TD     ED  P   R +++ G
Sbjct: 366 VH-------QPHR--YSRLAHLFDEFSACFDLADYVGITDVYAAGEDPIPGASRDDLVAG 416

Query: 436 I 436
           I
Sbjct: 417 I 417


>gi|326771698|ref|ZP_08230983.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           viscosus C505]
 gi|326637831|gb|EGE38732.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           viscosus C505]
          Length = 311

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 27/156 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT GK++  S +  I +  GL++  +G   T              P+     +  +
Sbjct: 139 LTLTGTDGKTTTVSMLSAILEAQGLTAPAVGNIGT--------------PV-----IEAV 179

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +     ++VE SS  L  H    +  +A +  NL  DH+D+H   +AY   K R++   
Sbjct: 180 LAGSADALAVELSSFQL--HTTRTLAPLASACLNLAADHLDWHGGLEAYAQDKARVYSH- 236

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY 272
                 A+    DA +++++++A    GCR  +VG+
Sbjct: 237 --TRLAAVYNLADAATEDMVRQADVVEGCR--AVGF 268


>gi|301630395|ref|XP_002944307.1| PREDICTED: UDP-N-acetylmuramate--L-alanine ligase-like [Xenopus
           (Silurana) tropicalis]
          Length = 480

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 141/342 (41%), Gaps = 59/342 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           QGA+A+V S+A         ++ + P ++    RK   +  + +  +       +A+ GT
Sbjct: 63  QGADAVVTSTA---------VQGDNPEVLAARARKIPVVPRALMLAELMRLRQGVAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +   +GL  +F IG    ++S   + RL                 QG 
Sbjct: 114 HGKTTTTSLVTSVLAEAGLDPTFVIG--GRLNSAGANARL----------------GQG- 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEEL 237
            ++ VEA     D   L+ + ++A   TN+  DH+     D+ + ++A+ +     F   
Sbjct: 155 EYIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFGRLKRAFVD-----FLHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IHNKQQVT 292
           +P    AI+  D+   +E++    +    V S G+    Q + +H++     +H   Q +
Sbjct: 207 MPFYGAAILCVDNPGVREILA---DVARPVTSYGFGADAQVRAVHVRADAGRMHFTVQRS 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             V   D +    L GE  V NAL A  + + +GI  A VL  L     V  RF+  G  
Sbjct: 264 NGVTLPDLEVELNLAGEHNVLNALAAIAVAVELGIPDAAVLRALAGFSGVGRRFQRYGDQ 323

Query: 353 ----SRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
                 GG  Y    DY H    +   L   R    GR +V+
Sbjct: 324 PARAENGGGHYQLIEDYGHHPVEMAATLAAARGAFPGRRLVL 365


>gi|212691758|ref|ZP_03299886.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|237724084|ref|ZP_04554565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. D4]
 gi|212665659|gb|EEB26231.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|229437544|gb|EEO47621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides dorei
           5_1_36/D4]
          Length = 432

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 149/360 (41%), Gaps = 26/360 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV      ++++A    +  
Sbjct: 15  KVTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDE----KEYAAD--GHPR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           IL+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G   
Sbjct: 69  ILLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L       +  + + A+  G  +     ++   G  TN
Sbjct: 128 -------NNHIGVPLTL-----LRLTPEHELAVIEMGANHPGEIKALTCIVEPDYGMITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L+E L       I    D      + +     C  +  G
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGMEGG 235

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +G +I   K+ A           EG+ F+    L G + + NAL A  +     + S  
Sbjct: 236 -EGLYIS-GKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQ 293

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFG 389
           + E LE    VP       T +   ++ VD A+ +N   M+  L+N R +     +V+ G
Sbjct: 294 ICEALEA--YVPHNNRSQLTETTDNKLIVD-AYNANPTSMMAALENFRLMNVAHKMVILG 350


>gi|170728851|ref|YP_001762877.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella woodyi ATCC
           51908]
 gi|229620422|sp|B1KKX6|MURC_SHEWM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169814198|gb|ACA88782.1| UDP-N-acetylmuramate--alanine ligase [Shewanella woodyi ATCC 51908]
          Length = 489

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 128/328 (39%), Gaps = 46/328 (14%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           HL   +    GA+ +VVS+A    +          I VV        L   R +G     
Sbjct: 70  HLGHKEEQVHGADVVVVSTAIHADNPELLEAQALRIPVVRRAEMLAELMRYR-HG----- 123

Query: 117 ILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-- 173
            +AV GT GK++  S +  +  Q     +F IG    ++S   + RL   S   +A+A  
Sbjct: 124 -VAVAGTHGKTTTTSLIASVYGQAERDPTFVIG--GLLNSAGTNARLGN-SRYLIAEADE 179

Query: 174 --LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              S+L  Q +  V                        TN+  DH+D ++       +  
Sbjct: 180 SDASFLHLQPMVSV-----------------------ITNIEADHMDTYEGDFERLKSTF 216

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
             F   LP    A++  DD   +E++    + G ++++ G+ +   +          + +
Sbjct: 217 IDFLHNLPFYGIAVMCIDDPVVRELLP---SVGRKIVTYGFSEDADVQALNFVQDGYRSR 273

Query: 291 VTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            T+   G +D + +  LPGE  V NAL A  +     I+   +++ L     +  RFE +
Sbjct: 274 FTLRRTGVEDVEVMVNLPGEHNVLNALAAIAVASEDEIEDEAIIQALADFEGIGRRFEQL 333

Query: 350 GT--NSRGGRIYV-DYAHTSNSLEMILK 374
           G     RG  + V DY H  + +   +K
Sbjct: 334 GCFDTDRGEVVLVDDYGHHPSEVAATIK 361


>gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4]
 gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4]
          Length = 819

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 144/359 (40%), Gaps = 47/359 (13%)

Query: 29  KINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +IN + +DSR +      +F AI   + +GH +I +   Q     VVS  +   +F    
Sbjct: 21  EINWLLTDSRSLSFPVESLFFAIHTARNNGHNYIAELYQQNLRYFVVSEMHP--EFEKM- 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++   L V+++ K L   A          ++ +TG++GK+ V  ++ Q+      + + 
Sbjct: 78  -TDAVFLKVEDSLKALQALAVAHRNAFDIPVIGITGSNGKTVVKEWLYQLLH----TDYV 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205
           I    T S  + ++++  P  ++   ALS  +  G+    +   S   +  RL  I +  
Sbjct: 133 I----TRSPRSYNSQIGVPLSVW---ALSESTQLGIFEAGI---SEPHEMKRLQPIIRPT 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G FTNLG  H +     +     K++LF+     +S  ++Y  D    E+         
Sbjct: 183 IGIFTNLGDAHQENFSGLKQKCEEKLQLFD-----QSEVLVYCSDNKLVEI--------- 228

Query: 266 RVLSVGYQGKFIHL----KKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYNA 315
            +    ++G F       K    I  K+      +V +     +     P   +  + NA
Sbjct: 229 SIAQSAFKGVFFSWGKSDKATVQIVQKEKTVSSTKVVLKYNAVESSVTIPFTDDASIENA 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           L    + + +G+ +A + + +  L  V  R E V    R   I  D Y    NSL + L
Sbjct: 289 LQCVAVMLYLGLKTAEIAKRILLLEAVAMRLE-VKEGVRDCLIINDSYNSDLNSLSIAL 346


>gi|44888240|sp|Q9F1M9|MURC_SHEVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 54/326 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G + +VVS+A   ++          I VV        L   R +G      +AV GT G
Sbjct: 79  HGTDVVVVSTAIDAENPELVAAKELRIPVVQRAEMLAELMRYR-HG------VAVAGTHG 131

Query: 126 KSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S +  I  Q     +F IG    ++S   + RL   S   +A+A     S+L  Q
Sbjct: 132 KTTTTSLIASIYAQADRDPTFVIG--GLLNSAGTNARLGN-SRYLIAEADESDASFLHLQ 188

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D +        +    F   LP 
Sbjct: 189 PMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFIDFLHNLPF 225

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295
              A++  DD   +E++ +    G ++++ G+         + A++  QQ      T+  
Sbjct: 226 YGVAVMCIDDPVVRELLPK---VGRKIVTYGFSED----ADIQALNFVQQGYSSHFTLRR 278

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--N 352
           +G +D   +  LPGE  V NAL +  +     I+   ++  L +   +  RF+ +GT   
Sbjct: 279 DGVEDIAVMVNLPGEHNVLNALASIAVATEDEIEDEAIVLALAQFEGIGRRFQQLGTFAT 338

Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377
           S+G  + V DY H  + +   +K  R
Sbjct: 339 SKGEVMLVDDYGHHPSEVAATIKAAR 364


>gi|294142806|ref|YP_003558784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
 gi|293329275|dbj|BAJ04006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
          Length = 451

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 25/136 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +GL+ + +G    I      + 
Sbjct: 99  VELFARAIKDRSP-CVIGITGSNGKSTVTTLVGEMAKAAGLN-YAVGGNIGIPVL---DL 153

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           L  P  +Y+                +E SS  L+  H L+    I+ +  N+  DH+D +
Sbjct: 154 LQKPVDLYI----------------LELSSFQLETTHSLN---CISATCLNISEDHMDRY 194

Query: 221 QTQQAYFNAKMRLFEE 236
              +AY  AK+ L+++
Sbjct: 195 SDLEAYRQAKLALYDQ 210


>gi|91762843|ref|ZP_01264808.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91718645|gb|EAS85295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 40/218 (18%)

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRL 109
           N +D +    + I +  + I++S    + +   S  ++ N   +  D     L +F SR 
Sbjct: 47  NIKDTYTTYKEIIKKKFDCIIISPGIDINNCKLSRFLKKNHKKIYTD-----LDIFYSR- 100

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSP 167
           Y  + +  + +TGT+GKS+ A  +  I +                   +D RL     +P
Sbjct: 101 YAFNQK--ITITGTNGKSTTAKLLYDILKDQ----------------KKDVRLVGNIGNP 142

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQA 225
           + L K +     +  T   +EASS+ L+  +L    I LI     N+  DH++ H+T   
Sbjct: 143 VLLEKKI-----KKDTLFVIEASSYQLEYSKLFKTNISLIL----NISPDHLERHKTINK 193

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           Y +AK +L +    K   AI+   + Y K  +K+   A
Sbjct: 194 YVSAKFKLIKN-QSKNDIAILNTKNFYIKRKLKQKKFA 230


>gi|74316133|ref|YP_313873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055628|gb|AAZ96068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 464

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 8/117 (6%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P+   + ++  V++DSR ++ G +FVA+ G + DG  F  QA+ QGA  +V+  A +  D
Sbjct: 20  PLPGADAEVVRVTTDSRTLRPGDLFVALRGERFDGGAFAAQALQQGAAGVVLDRAQA-PD 78

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            +  +R       VD+TR  L   A     +    ++A+TG++GK++V   +  I +
Sbjct: 79  LAQALR-------VDDTRLALGRLAQAWRQRFAIPLVAITGSNGKTTVKEMLAAILR 128


>gi|326390736|ref|ZP_08212290.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993273|gb|EGD51711.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 429

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 99/449 (22%), Positives = 164/449 (36%), Gaps = 135/449 (30%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L ++N R+ L+      Y  +P+    I+ V GT+GK S ++F+  I Q++G     +  
Sbjct: 20  LGLENIRRLLN------YMGNPQKNLKIIHVAGTNGKGSTSAFISNILQQAGYK-VALYT 72

Query: 150 TSTISSFAQDNRLT-------------------------------TPSPIYLAKALSYLS 178
           +  +  F +  R+                                T   +  A A  Y  
Sbjct: 73  SPYLEEFEERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFY 132

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            + V  V +E    G    R D    I  S  ++    IDY  T         RL   L 
Sbjct: 133 DEKVDFVVLEVGLGG----RFDATNAIDFSLVSVITT-IDYDHTD--------RLGHTL- 178

Query: 239 PKESPAIIYADDAYSKE-VMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHN-------KQ 289
                     + AY K  ++KR       V+S   Q + +  + + C + N       K 
Sbjct: 179 ---------GEIAYEKAGIIKR----NGVVVSFYQQPEALKVIIEACEVRNAYLTVLEKS 225

Query: 290 QVTISVEGKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            V I  +  DF         D    L GE Q+YNA              AL +E +EKL 
Sbjct: 226 NVIIKEQNPDFQIFDYKKYKDLKITLLGEHQIYNA--------------ALAIESVEKLK 271

Query: 341 VV------------------PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +                   PGR E +    +   + +D AH    + ++ ++++     
Sbjct: 272 MYGYEITEKDIREGLYRAKWPGRLEVM---RKKPYVVIDGAHNPQGMTVLKESLKLFKYD 328

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-----NPRSEDPEKIRAEIIHGIP 437
           ++I+V G   D+D  K   M  I +  ADI I T          SE  E+I  E +  I 
Sbjct: 329 KLILVIGMLKDKDTQK---MLDIIVPEADIIITTTPISERAYKASELAERIEKEKVIAIE 385

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 N  EA++ A+++  ++D+++  G
Sbjct: 386 ------NIEEAVKYALDIAKEEDMVLFCG 408


>gi|315443923|ref|YP_004076802.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
 gi|315262226|gb|ADT98967.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
          Length = 475

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 77/189 (40%), Gaps = 15/189 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266
           TN+  DH+D++ T + Y      +F++ + +  P    ++  DD  +  + +R    G R
Sbjct: 192 TNIEADHLDFYGTVENY----TAVFDQFVDRIKPGGALVVCVDDPGAAALAERTAALGIR 247

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCI 323
           VL  G   G    L     +       ISV  +D        +PG     NAL A     
Sbjct: 248 VLRYGSAPGLDATLLDWSQLGTGAVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAAT 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--- 380
             G +   VL+ L     V  RFE VGT   G R++ DYAH    +   +  +R +    
Sbjct: 308 QAGAEIDAVLDGLAGFDGVRRRFELVGTAG-GVRVFDDYAHHPTEVRAAITALRAVAEQT 366

Query: 381 -SGRIIVVF 388
              R + VF
Sbjct: 367 PGARTVAVF 375


>gi|293192329|ref|ZP_06609440.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
 gi|292820244|gb|EFF79238.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
          Length = 463

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 18/190 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D + +++ +    +     ++P     +  A+D  +  + + A   G RV++
Sbjct: 181 TNVEPDHLDRYHSREEFEGIFVEFARRMVPG-GLLVTCAEDEGAVRLAQSARAEGLRVVT 239

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAG 320
            G + + +    V        V +  +G      +          +PGE  V NA  A  
Sbjct: 240 YGRRERSLCTPDVVI----ADVRVEAQGAGASLTWGELSASLALSVPGEHNVLNAAAAWV 295

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             I  G+    + + L +      RFE  G   SR  R++ DYAH    +E  ++    +
Sbjct: 296 AGIECGLSPQAIADGLGEFTGAARRFEARGQVGSR--RLFDDYAHHPTEVEAAIREAHVV 353

Query: 380 TS-GRIIVVF 388
              G + VVF
Sbjct: 354 AGEGDVTVVF 363


>gi|169794349|ref|YP_001712142.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AYE]
 gi|184159850|ref|YP_001848189.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ACICU]
 gi|213159076|ref|YP_002321074.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|215481905|ref|YP_002324087.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|239503825|ref|ZP_04663135.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB900]
 gi|301344638|ref|ZP_07225379.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB056]
 gi|301513416|ref|ZP_07238653.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB058]
 gi|301596387|ref|ZP_07241395.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB059]
 gi|332850155|ref|ZP_08432542.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332868969|ref|ZP_08438528.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
 gi|189029225|sp|A3M9Y0|MURC_ACIBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711854|sp|B7GV74|MURC_ACIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711855|sp|B7ICE4|MURC_ACIB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470258|sp|B2I1J4|MURC_ACIBC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470266|sp|B0V9F6|MURC_ACIBY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169147276|emb|CAM85135.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii AYE]
 gi|183211444|gb|ACC58842.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078672|gb|ABO13724.2| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii ATCC
           17978]
 gi|213058236|gb|ACJ43138.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|213988079|gb|ACJ58378.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|322509764|gb|ADX05218.1| murC [Acinetobacter baumannii 1656-2]
 gi|323519777|gb|ADX94158.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332731004|gb|EGJ62310.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332733012|gb|EGJ64214.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
          Length = 482

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 8/192 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRV- 246

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  V++ G+ +   I    V     +   T+  +G++        PG   V NAL A 
Sbjct: 247 --GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTINQPGLHNVLNALAAI 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
           G+    G+    +   L+    V  RF+  G    G    ++  DY H    +E  +K  
Sbjct: 305 GVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDDYGHHPKEVEATIKAA 364

Query: 377 RTITSGRIIVVF 388
           R     R +V+ 
Sbjct: 365 RQSHPDRRLVML 376


>gi|148259082|ref|YP_001233209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           cryptum JF-5]
 gi|146400763|gb|ABQ29290.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           cryptum JF-5]
          Length = 461

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 27/120 (22%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL---SSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + +TGT+GKS+  + +  I   +G+   +   +GP                     A AL
Sbjct: 120 VGITGTNGKSTTTALLAHILADAGIEVAAGGNLGPA--------------------ALAL 159

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L   GV    +E SS+ L+  R+  ++  AG+  NL  DH+D H     Y  AK RLF
Sbjct: 160 PRLGDDGV--YVLEMSSYMLE--RIVNMRFSAGAMLNLTPDHLDRHGNMAGYEAAKSRLF 215


>gi|186477420|ref|YP_001858890.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phymatum
           STM815]
 gi|229486477|sp|B2JHF9|MURC_BURP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|184193879|gb|ACC71844.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia phymatum STM815]
          Length = 464

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 117/308 (37%), Gaps = 43/308 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    R+   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL T   I              
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV------------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                 A +   D   L+   +I    TN+  DH+D +    A        F   LP   
Sbjct: 159 ------AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE-GKDF 300
            A++  DD   KE++         ++  G+     +    V A   K   T   E     
Sbjct: 212 IAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVEAREGKMHFTAMREDAPPI 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRI 358
           D +  LPG   V NAL A  +   + +  A +   L   + V  RF+  G  T + GG  
Sbjct: 269 DIVLNLPGLHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVTVTSGGAY 328

Query: 359 YV--DYAH 364
            +  DY H
Sbjct: 329 TLVDDYGH 336


>gi|326402233|ref|YP_004282314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           multivorum AIU301]
 gi|325049094|dbj|BAJ79432.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           multivorum AIU301]
          Length = 461

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 27/120 (22%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL---SSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + +TGT+GKS+  + +  I   +G+   +   +GP                     A AL
Sbjct: 120 VGITGTNGKSTTTALLAHILADAGIEVAAGGNLGPA--------------------ALAL 159

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L   GV    +E SS+ L+  R+  ++  AG+  NL  DH+D H     Y  AK RLF
Sbjct: 160 PRLGDDGV--YVLEMSSYMLE--RIVNMRFSAGAMLNLTPDHLDRHGNMAGYEAAKSRLF 215


>gi|281424945|ref|ZP_06255858.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
 gi|281400789|gb|EFB31620.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
          Length = 443

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 129/323 (39%), Gaps = 59/323 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I           P   Y+      
Sbjct: 104 MVCITGSNGKTTTTSLIYHIFKSAG---YDVGLAGNIGKSLALQVAEDPHEYYV------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D +  + + Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYDFRANIAILLNITPDHLDRYDFKFENYADAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              P++S  I + DD   K+ +++            Y   F  LK+  +I         +
Sbjct: 203 NQTPEDS-FIYWNDDPVIKKELEKFEIK-------AYACPFSELKEKGSIG-------YI 247

Query: 296 EGKDFDFLFPLP-----------GEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVP 343
           E   +   +P P           G+  +YN+L AAGL   I GI   ++ + L     V 
Sbjct: 248 EAGTYKLEYPTPFNMEQEALSLTGKHNIYNSL-AAGLASNIAGIKKEIIRKSLSDFPGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            R E V     GG  Y++ +  +N  +    L++++T T    +++ G G D+     PI
Sbjct: 307 HRLEKVC--KVGGVQYINDSKATNVDACWYALESMKTPT----VLILG-GKDKGNDYTPI 359

Query: 402 MGKIALDLADIAIVTDDNPRSED 424
              +      +  +  DN +  D
Sbjct: 360 KELVKKKCRGLVYLGADNKKLHD 382


>gi|257483446|ref|ZP_05637487.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330987135|gb|EGH85238.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011578|gb|EGH91634.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 486

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 163/431 (37%), Gaps = 76/431 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--- 295
           P    A++  DD   +E++ +        L+ G    F     + AI+ +Q   ++    
Sbjct: 219 PFYGLAVMCIDDPVVREILPQVKRP---TLTYG----FSESADIRAINVRQDGMLTFFTV 271

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351
              + +  D    +PG   V N+L    +    G+    +++ L     V  RF+  G  
Sbjct: 272 LRRDREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGEL 331

Query: 352 NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              GG + +  DY H    +  ++  +R      R+++V+     R    R +       
Sbjct: 332 PVEGGNVMLVDDYGHHPREVAAVISAVRGGWPDRRLVMVYQP--HRFSRTRDLYDDFVQV 389

Query: 409 LAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLN 457
           LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E       +L 
Sbjct: 390 LADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAPLVKPLLR 447

Query: 458 KQDVLVVAGKG 468
             D+L+  G G
Sbjct: 448 AGDILLCQGAG 458


>gi|77166314|ref|YP_344839.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
 gi|122063251|sp|Q3J787|MURD_NITOC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76884628|gb|ABA59309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
          Length = 453

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 126/302 (41%), Gaps = 44/302 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS   +L + +        I VV +    + LFAS  Y K P  ++ +TG++GKS
Sbjct: 74  AEQLVVSPGVALSEPAILAARARGIPVVGD----IELFAS--YVKAP--VIGITGSNGKS 125

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S ++ + +++G      G             L TP+   L K +  L    ++   +
Sbjct: 126 TVTSLLEAMARQAGRQVLAGG------------NLGTPALELLEKPVPDLYILELSSFQL 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E +++ LD         +A    N+  DH+D +    AY  AK R++          +I 
Sbjct: 174 E-TTYTLDA--------VAACVLNISPDHMDRYPDLDAYCQAKARIYR----GTGTMVIN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LF 304
           ADD +    + + H   C   ++G      +      +  +   T  V G +        
Sbjct: 221 ADD-FRVASLVQPHRP-CLRFTLGMPAVDEY-----GLQERAGETWLVRGHERLLSARRL 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G   + NAL A  L  A+G+  A +L  L+    +P R E++     G R Y D   
Sbjct: 274 PLAGRHNLANALAALALGEAVGLPRAAMLSALQAFSGLPHRCEWL-AEVNGVRWYNDSKG 332

Query: 365 TS 366
           T+
Sbjct: 333 TN 334


>gi|294677019|ref|YP_003577634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
 gi|294475839|gb|ADE85227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
          Length = 483

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 133/351 (37%), Gaps = 51/351 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S D+R I+ G +FVA+  +  DGH F+  A+ +GA   +VS                P+
Sbjct: 27  LSIDTRSIRPGEMFVAL-KDVRDGHDFVADALKKGAACALVSR------IPEGCSEEDPL 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +  + L         +    ++AVTG+ GK+S    ++ +    G         + 
Sbjct: 80  LLVPDVLRALEDLGRAGRARARAQVIAVTGSVGKTSTKEMLRAVLSAQGRVH------AA 133

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +SF  +N      PI LA+     +      + V  +  G     +   +  A   T +
Sbjct: 134 EASF--NNHWGV--PITLAR---MPAEADFAVIEVGMNHPGEISPLVKMARPHAAMITTV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLP----------KESPAIIYADDAYSKEVMKRAHN 262
              H++  +T       K  +F+ L P          + +P ++ A  A + +V+     
Sbjct: 187 AAAHLEAFETLDDIAREKAAIFDGLEPGGTAVVPTGLESTPILLAAAKARAGQVVTFGPA 246

Query: 263 AGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            G   R++S    G          I   +Q      GK   F    PG+    NAL    
Sbjct: 247 PGSDYRLVSAKIAGD-------ATIVQAEQA-----GKPMLFKVMTPGKHFANNALGVLA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           L  A+G D A+    +       GR    GT     RI++D    + S ++
Sbjct: 295 LARAVGADPAVAALDIGLWAPPAGR----GTRE---RIWLDLIDEAQSFDL 338


>gi|260557901|ref|ZP_05830114.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ATCC
           19606]
 gi|260408692|gb|EEX01997.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ATCC
           19606]
          Length = 482

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 8/192 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRV- 246

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  V++ G+ +   I    V     +   T+  +G++        PG   V NAL A 
Sbjct: 247 --GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTINQPGLHNVLNALAAI 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
           G+    G+    +   L+    V  RF+  G    G    ++  DY H    +E  +K  
Sbjct: 305 GVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDDYGHHPKEVEATIKAA 364

Query: 377 RTITSGRIIVVF 388
           R     R +V+ 
Sbjct: 365 RQSHPDRRLVML 376


>gi|84495983|ref|ZP_00994837.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
 gi|84382751|gb|EAP98632.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
          Length = 488

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 105/295 (35%), Gaps = 53/295 (17%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    +AV G +GK++  S +    Q + L            SFA    LT         
Sbjct: 118 HDSRPVAVAGANGKTTTTSMLTVALQAADLDP----------SFASGGELT--------- 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQT----QQ 224
                  QG            ++    DG  L+ G      TN+  DH+D++ T    Q+
Sbjct: 159 ------GQGTNAAWTGGDVFVVEADESDGSFLVYGPEVAIVTNVQPDHLDFYGTFDNVQR 212

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           AY +     F + +  +   +  ADD+ S  +   A   G RVL+ G+           A
Sbjct: 213 AYAS-----FADSIRSDGLLVACADDSGSLFLASNAAIGGTRVLTYGFDDT---ADLTLA 264

Query: 285 IHNKQQVTISV-------EGKDFDFLFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHL 336
            H      I         +G         PG     NA  A        G D+ALVLE L
Sbjct: 265 DHRADDEGIGTTTTLRLPDGSTATMRLATPGAHNALNAAAAYLAATEGFGADAALVLEGL 324

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVF 388
                   RFE  G +  G  +  DYAH +  +  +++    I +   GR+ V F
Sbjct: 325 AGFDGARRRFEVRG-DVAGVTVVDDYAHNAGKVAAVVRTAAEIAARRGGRLHVAF 378


>gi|186477425|ref|YP_001858895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
 gi|184193884|gb|ACC71849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
          Length = 470

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 9/105 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G++ D H F+    A    A++ +   +  +F        P 
Sbjct: 28  VSTDSRTCGPGDLFVALKGDRFDAHDFLSDVAAHNVSAVLATR--TPDNF------EVPA 79

Query: 93  L-VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           L V  +TR  L   A+    +    ++AVTG++GK++V   +  I
Sbjct: 80  LRVTGDTRTALGALANGWRQRFSLPLVAVTGSNGKTTVKEMISSI 124


>gi|20808074|ref|NP_623245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479543|ref|ZP_05092860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
 gi|30316069|sp|Q8R9G4|MURD_THETN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|20516656|gb|AAM24849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034511|gb|EEB75268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
          Length = 450

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 31/221 (14%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+  E SS  L+  +    K+      N+  DH+D H+T + Y N K R+FE    +E  
Sbjct: 159 HIVAEISSFQLETVKEFRPKI--SCIINITPDHLDRHKTFENYANIKGRIFENQREEEYV 216

Query: 244 AIIYADDAYSKEVMKRAHN-----AGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVE 296
            + Y DD  +  + +RA       +  +VL  G   K  F++L       NK+   I VE
Sbjct: 217 VLNY-DDPVTWGLKERAKAKVFPFSRKKVLENGAYVKEGFLYL------QNKK--VIKVE 267

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PGE  + NAL A+ +    GI+   +   L     V  R EFV     G 
Sbjct: 268 D------IYIPGEHNLENALAASSVAYLSGIEVDAIETTLRTFKGVEHRIEFVA-EIEGI 320

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           + Y D   T+        +I+ I + +  +V   GG  D+G
Sbjct: 321 KFYNDSKGTNPD-----ASIKAIQALKTPIVLIAGG-YDKG 355


>gi|300813578|ref|ZP_07093909.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512326|gb|EFK39495.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 462

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 101/281 (35%), Gaps = 42/281 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKA 173
           +A++GT GK+S  S V +I     + +    PT  +     D     ++     ++L +A
Sbjct: 115 IAISGTHGKTSTTSMVAEI-----IKNLDTDPTIMLGGQLDDINGNIKIGKEKKLFLTEA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKM 231
             Y                     + + +KL   +    N+  DH+DY            
Sbjct: 170 CEY---------------------KANILKLFPTTAVILNIDEDHLDYFDNIDHIIRT-F 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHN 287
           + F E L K    II  DD  +++++    NA     ++     Y  K I        + 
Sbjct: 208 KGFTEKLNKNDYCIINIDDENTRKLLP-IDNAKLITFAIDKKADYMAKNIDFDMYGRPYY 266

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                    GK       + G   +YN L A G C   GID    ++ +     V  R E
Sbjct: 267 DLYYKDKYIGK---VELAILGYHNIYNTLAAIGACHENGIDFEKCIKGIGDYKGVHRRLE 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           F G   +  R+  DYAH    ++  +  I+     R+  VF
Sbjct: 324 FKGL-YKNSRVMDDYAHHPTEIKSSISAIKKSCKKRLFTVF 363


>gi|304392255|ref|ZP_07374197.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
 gi|303296484|gb|EFL90842.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
          Length = 472

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 22/194 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAK--MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           TN+  +H+D+++T   +  AK   R F E LP     ++  D    + ++ R  +   R+
Sbjct: 181 TNIDPEHLDHYKT---FDRAKKAFRRFIENLPFYGFGVMCIDHPEVQALVARVEDR--RL 235

Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-------DFLFPLPGEFQVYNALVAA 319
           ++ G   +  +  + V A   K    + ++ +         D   P+PG   V NA  A 
Sbjct: 236 VTYGNNPQADVRFRNVRAQGAKNIFDVVIQDRRSPDAIELNDLELPMPGIHNVSNATAAI 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   +G+ +  + + L     V  RF   G+ + G  ++ DYAH    +  +LK  R+ 
Sbjct: 296 AVAWQLGVGAQEIRDGLAAFKGVRRRFTHTGSWN-GVEVFDDYAHHPVEISAVLKAARSA 354

Query: 380 ------TSGRIIVV 387
                 T GR+I +
Sbjct: 355 VRSGDGTGGRVIAI 368


>gi|226953384|ref|ZP_03823848.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|226835861|gb|EEH68244.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ATCC 27244]
          Length = 481

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 10/193 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 187 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAVVCGDDANIREILPRV- 245

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVA 318
             G  VL+ G+  +   ++ +    +  +   +V  KD + L      PG   V NAL A
Sbjct: 246 --GRPVLTYGFD-EDNDIRAIDVEQDGMRSHFTVLRKDREPLRVTVNQPGLHNVLNALAA 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKN 375
            G+    G+    +   L     V  RF+  G    G    ++  DY H    +E  +K 
Sbjct: 303 IGVATDEGVSDDAICRALAGFSGVGRRFQVQGEFEVGDGLVKLVDDYGHHPKEVEATIKA 362

Query: 376 IRTITSGRIIVVF 388
            R     R +V+ 
Sbjct: 363 ARASHPDRRLVML 375


>gi|170744732|ref|YP_001773387.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium sp. 4-46]
 gi|229620047|sp|B0UFC6|MURC_METS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168199006|gb|ACA20953.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium sp. 4-46]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 136/338 (40%), Gaps = 60/338 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSG 125
           AE +VVS+A         IR + P L +   R+   +  + +  +    ++ +AV GT G
Sbjct: 67  AELVVVSTA---------IRRDNPELAMARERRLPVVRRAEMLAELMRFKSCVAVAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL    I     I+++  + R+                 +G   V
Sbjct: 118 KTTTTSLVATLLDAGGLDPTVIN-GGIINAYGTNARM----------------GEGEWMV 160

Query: 186 SVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VEA     D+     +KL A     TN+  +H+D+  +  A  +A  R F + +P    
Sbjct: 161 -VEA-----DESDGTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDA-FRAFIDNIPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHN-----------AGCRVLSV---GYQGKFIHLKKVCAIHNKQ 289
           A++  D    ++++ R  +           A  R++ V   G Q +F    +V     + 
Sbjct: 214 AVMCIDHPTVQDLVGRIEDRRIITYGENPQADVRLIDVDLRGGQSRF----RVMIRDRRP 269

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              + +E    D + P+PG+    NA  A  +   +G+    +   L     V  RF   
Sbjct: 270 GFRLEME----DLVLPMPGKHNALNATAALAVAHELGVAPEAIRRALAGFGGVKRRFTRT 325

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           G    G +I+ DY H    ++ +LK  R  T G ++ V
Sbjct: 326 G-EWNGAQIFDDYGHHPVEIKAVLKAARASTEGNVVAV 362


>gi|91228512|ref|ZP_01262434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           alginolyticus 12G01]
 gi|91187946|gb|EAS74256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           alginolyticus 12G01]
          Length = 437

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 35/147 (23%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      +   +GL    +G    I   A D  L   + +Y+ +  S+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANAAGLD---VGVGGNIGVPALD-LLEQDADLYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-- 234
                     +E +S          +KL A +F NL  DH+D +Q    Y  AK+R+F  
Sbjct: 166 ---------QLETTS---------SLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFNH 207

Query: 235 ----------EELLPK-ESPAIIYADD 250
                     +E  P  E P + +  D
Sbjct: 208 AALAVVNRDDQETFPDAEMPLVTFGSD 234


>gi|294142803|ref|YP_003558781.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella violacea DSS12]
 gi|11761336|dbj|BAB19203.1| MurC [Shewanella violacea]
 gi|293329272|dbj|BAJ04003.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella violacea DSS12]
          Length = 494

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 54/326 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G + +VVS+A   ++          I VV        L   R +G      +AV GT G
Sbjct: 90  HGTDVVVVSTAIDAENPELVAAKELRIPVVQRAEMLAELMRYR-HG------VAVAGTHG 142

Query: 126 KSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S +  I  Q     +F IG    ++S   + RL   S   +A+A     S+L  Q
Sbjct: 143 KTTTTSLIASIYAQADRDPTFVIG--GLLNSAGTNARLGN-SRYLIAEADESDASFLHLQ 199

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V     +  +D +         G F  L    ID+                  LP 
Sbjct: 200 PMVSVVTNIEADHMDTY--------GGDFEKLKSTFIDFLHN---------------LPF 236

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295
              A++  DD   +E++ +    G ++++ G+         + A++  QQ      T+  
Sbjct: 237 YGVAVMCIDDPVVRELLPK---VGRKIVTYGFSED----ADIQALNFVQQGYSSHFTLRR 289

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--N 352
           +G +D   +  LPGE  V NAL +  +     I+   ++  L +   +  RF+ +GT   
Sbjct: 290 DGVEDIAVMVNLPGEHNVLNALASIAVATEDEIEDEAIVLALAQFEGIGRRFQQLGTFAT 349

Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377
           S+G  + V DY H  + +   +K  R
Sbjct: 350 SKGEVMLVDDYGHHPSEVAATIKAAR 375


>gi|317493278|ref|ZP_07951700.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918671|gb|EFV40008.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 500

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 131/348 (37%), Gaps = 74/348 (21%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+        L   R +G      +A+ GT GK+
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRFR-HG------IAIAGTHGKT 135

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  + V  I   +GL  +F  G    + +     RL + S   +A+A     S+L  Q +
Sbjct: 136 TTTAMVSSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADESDASFLHLQPM 192

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V     +  +D +                  H D+   +Q + N     F   LP   
Sbjct: 193 VAVVTNIEADHMDTY------------------HGDFENLKQTFIN-----FLHNLPFYG 229

Query: 243 PAIIYADDAYSKEVMKR----------AHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQ 289
            A++  DD   +E++ R          + +A  R+ S    G QG F     +C   +K 
Sbjct: 230 RAVMCIDDPVVRELLPRVGRHITTYGFSEDADVRIESYQQNGAQGTFF----ICR-QDKP 284

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ +++           PG     NA  A  +    GI    +L  LE       RF+F+
Sbjct: 285 RLAVTLNA---------PGRHNALNAAAAVSVATEEGIADEDILRALEGFQGTGRRFDFL 335

Query: 350 G------TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           G       N + G+  +  DY H    ++  +K  R    + R++++F
Sbjct: 336 GEYALENVNGKEGKAMLVDDYGHHPTEVDATIKAARAGWPNRRLVMIF 383


>gi|285019573|ref|YP_003377284.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas albilineans GPE
           PC73]
 gi|283474791|emb|CBA17290.1| probable udp-n-acetylmuramate-l-alanine ligase protein [Xanthomonas
           albilineans]
          Length = 478

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 124/331 (37%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    G+      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLTAAVLSEGGMD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  +    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLISV---ITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G  +   +  + V    ++   T+ + EG     
Sbjct: 224 VLCIDD---PEVAALAAQTPRHVMSYGLSENADVRAEDVVQEGSRMHFTLRMPEGSSTAV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   +G+  A +   L+    +  RF  +G    + G R+ V
Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVTPAAIASALQSFAGIGRRFNDLGEVVTANGARVRV 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H    L  +    R      R++V F
Sbjct: 341 VDDYGHHPRELAAVFAAARGGWPDKRLVVAF 371


>gi|294852756|ref|ZP_06793429.1| UDP-N-acetylmuramate-alanine ligase [Brucella sp. NVSL 07-0026]
 gi|294821345|gb|EFG38344.1| UDP-N-acetylmuramate-alanine ligase [Brucella sp. NVSL 07-0026]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 14/188 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  +   R+++
Sbjct: 181 TNIDPEHLDHYGNFDA-VRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDR--RIIT 237

Query: 270 VG----YQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLC 322
            G     + +F++ +   A      V  S +G+     D   P+PG   V NA  A  + 
Sbjct: 238 YGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATAAIAVA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI S  +   L     V  RF   G+ + G  I+ DY H    +  +LK  R  TS 
Sbjct: 298 HELGISSDDIRRGLGSFGGVKRRFTHTGSWN-GVEIFDDYGHHPVEIRAVLKAAREATSQ 356

Query: 382 --GRIIVV 387
             GR++ +
Sbjct: 357 AGGRVVAI 364


>gi|229117409|ref|ZP_04246785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
 gi|228666019|gb|EEL21485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
          Length = 450

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRV 267
           F NL   H+DYH T++ Y  AK  +F+     +  ++I ADDA   +VM   A++ G ++
Sbjct: 186 FLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADDA---DVMALSAYSKGQKI 241

Query: 268 L-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           + S   + +     K  A++ K +  + V          LPG+  + N L A  +   +G
Sbjct: 242 IFSTAKENEDGACIKDNALYFKGEKVVEVSD------IVLPGQHNLENILAAMSIAKLLG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           + +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 296 VSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|33151489|ref|NP_872842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           ducreyi 35000HP]
 gi|60390541|sp|Q7VP56|MURD_HAEDU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33147709|gb|AAP95231.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           ducreyi 35000HP]
          Length = 435

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ Q++G+   ++G    I                   ALS 
Sbjct: 109 IIAITGSNGKSTVTTLVSEMAQQAGI---KVGMGGNIG----------------IPALSL 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L ++G     +E SS  L+      +K  A +  N+ +DH+D + + + Y  AK+R++E
Sbjct: 150 L-NKGYELFVLELSSFQLETTY--SLKAKAATILNVSQDHMDRYASGEHYRQAKLRIYE 205


>gi|255320030|ref|ZP_05361226.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
 gi|255302898|gb|EET82119.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
          Length = 482

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 123/331 (37%), Gaps = 42/331 (12%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + A  +VVS+A   +  +  A I    P++      +   +    +  +H    +AV GT
Sbjct: 80  KNASVLVVSTAIDPENPEVKAAIEQRIPVV------RRAEMLGELMRYRHG---IAVAGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  +    G+      PT  I      NR    + +  ++           
Sbjct: 131 HGKTTTTSLLTCMLAEEGMD-----PTYVIGGLL--NRTGVNAALGASR----------- 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++  EA         L+ +  I    TN+  DH+D +             F   LP    
Sbjct: 173 YIVAEADESDASFLHLEPMAAIV---TNIDADHMDTYGGSFDVLKDTFIQFLHKLPFYGL 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DDA  +E+M R       +L+ G+      ++ V    +  +   +V  KD + L
Sbjct: 230 AVVCGDDANIREIMPRIARP---LLTYGFNPDN-DIRAVDVEQDGMRSHFTVLRKDREPL 285

Query: 304 ---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGR 357
                 PG   V NAL A G+    G+  A +   LE    V  RF+     G      +
Sbjct: 286 RLTINQPGLHNVLNALAAIGVATDEGVSDAAIGRALEGFSGVGRRFQVQGEFGLEQGTVK 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  DY H    +E  +K  R     R +V+ 
Sbjct: 346 LVDDYGHHPKEVEATIKAARQSHPDRRLVMM 376


>gi|332885965|gb|EGK06209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas mossii
           DSM 22836]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 44/286 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           ++ +TG++GK++  S +  I + +GL+   +G    I  SFA+                 
Sbjct: 104 MICITGSNGKTTTTSLIYHILKSAGLN---VGLGGNIGRSFARQ---------------- 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
            ++     +  +E SS  L+   +   K       N+  DH+D Y    Q Y +AKMR+ 
Sbjct: 145 -VAEDNFDYYVLELSSFQLEN--MYSFKADIAILLNITPDHLDRYDHDMQKYVDAKMRIV 201

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    +++      D   SKE+ K        ++S G Q  F   K   AI   +   I 
Sbjct: 202 QNQTEEDAFIFWEEDPIVSKEIQK--------LVSKGKQYTFADHKVGNAIAYPENNEIK 253

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++     F     L  L G   +YN+L +      + I    +   L     V  R E V
Sbjct: 254 IDTPKSIFIMKEDLLALEGTHNLYNSLASGITAKLLDITDENLRHSLSDFQGVEHRLEKV 313

Query: 350 GTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDR 394
               RG +   D   T+ NS    L++++T    +++++ G G D+
Sbjct: 314 A-RVRGIQFINDSKATNVNSCWYALQSMKT----KVVLILG-GTDK 353


>gi|332872846|ref|ZP_08440811.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
 gi|332739007|gb|EGJ69869.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
          Length = 482

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 8/192 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRV- 246

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  V++ G+ +   I    V     +   T+  +G++        PG   V NAL A 
Sbjct: 247 --GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTINQPGLHNVLNALAAI 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
           G+    G+    +   L+    V  RF+  G    G    ++  DY H    +E  +K  
Sbjct: 305 GVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDDYGHHPKEVEATIKAA 364

Query: 377 RTITSGRIIVVF 388
           R     R +V+ 
Sbjct: 365 RQSHPDRRLVML 376


>gi|313905181|ref|ZP_07838549.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
 gi|313469934|gb|EFR65268.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 103/256 (40%), Gaps = 37/256 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAVTGT+GK++  + + +I +      + +G           N  T  + + L +  + 
Sbjct: 109 VLAVTGTNGKTTTVTLLGEIMKDYYPEVYVVG-----------NIGTPYTDVVLQQTENA 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +   V+   +E          ++    +A + TN+  DH++ H T + Y   K R+ E 
Sbjct: 158 WTVAEVSSFQMET---------IEEFHPVASALTNITEDHLNRHHTMEEYIRCKARVTEN 208

Query: 237 LLPKESPAIIYADDA---YSKEV-MKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQ 290
              ++   + Y D+    ++++V  K    +  RVL  G   +G  I LK      +  +
Sbjct: 209 QTAEDCCVLNYEDEVLRPFAEKVNAKVIFFSSRRVLEKGIYLEGDTIRLK------DGGE 262

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V   V+  D   L    G     N +VA  +    G+    +   +     V  R EFV 
Sbjct: 263 VIDVVKTGDLQLL----GLHNFENVMVAVAMAYFAGVPMDSIRRTICAFRGVEHRIEFV- 317

Query: 351 TNSRGGRIYVDYAHTS 366
              +G R Y D   T+
Sbjct: 318 EEKKGVRYYNDSKGTN 333


>gi|312874957|ref|ZP_07734976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089702|gb|EFQ48127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
          Length = 455

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 131/325 (40%), Gaps = 37/325 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR   A  +FV +VG + DGH +I  A+A GA A +       Q   A    N
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYIANAVANGAVAAL------WQKDHANRPEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+T   L   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLI 205
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L  I   
Sbjct: 133 TQ--ANF--NNEIGVP--------ITILEMKPTTEILV--LEMGMDRAGQLHHLSEIVCP 178

Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +G  HI++  T+    +AKM + + L  KE    I+  D     +  RA    
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIFNGD--EPLLQARAQKLN 234

Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               + G+     I+     +  +    TI+       F  P+ G+  V NAL A  +  
Sbjct: 235 QLQATFGFNSTDTIYATNFNSYMHHASFTIN--DSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEF 348
             G+    + + L        R ++
Sbjct: 293 TFGVPDVEIAQALANFVPTANRMQW 317


>gi|296504406|ref|YP_003666106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
 gi|296325458|gb|ADH08386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
          Length = 424

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 22/207 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 142 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 200

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G ++L S   + +     K  A++ K +  I V          LPG
Sbjct: 201 A---DVMALSAYSKGQKILFSTTKEIEDGACIKDNALYFKGEKVIEVSD------IVLPG 251

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSN 367
           +  + N L A  +   +G  +  +   L++   V  R E+V T N+R  + Y D    S 
Sbjct: 252 QHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYND----SK 305

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDR 394
           +  M+          + IV+   G DR
Sbjct: 306 ATNMLATEKALSAFTQPIVLLAGGLDR 332


>gi|296116435|ref|ZP_06835049.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977028|gb|EFG83792.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 466

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 28/134 (20%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF---QIGPTSTISSFAQDNRL 162
           A R  G H    + VTGT+GKS+    +  +   +G+ +     +GP +       DN  
Sbjct: 107 AVRRAGSH-ARFVGVTGTNGKSTTTVLLAHLLDHAGIPAIAGGNLGPAALSLPLLPDNG- 164

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                +Y+ +  SY+                    RLD +   A    NL  DH+D H  
Sbjct: 165 -----VYVLEMSSYM------------------LERLDRMHFDAACLLNLTPDHLDRHGD 201

Query: 223 QQAYFNAKMRLFEE 236
              Y  AK+ +F+ 
Sbjct: 202 MAGYSRAKLHIFDR 215


>gi|260566065|ref|ZP_05836535.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 4 str. 40]
 gi|260155583|gb|EEW90663.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 4 str. 40]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 14/188 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  +   R+++
Sbjct: 181 TNIDPEHLDHYGNFDA-VRAAFRQFVENVPFYGFGVMCLDHPEMQALVSRIEDR--RIIT 237

Query: 270 VG----YQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLC 322
            G     + +F++ +   A      V  S +G+     D   P+PG   V NA  A  + 
Sbjct: 238 YGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATAAIAVA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI S  +   L     V  RF   G+ + G  I+ DY H    +  +LK  R  TS 
Sbjct: 298 HELGISSDDIRRGLGSFGGVKRRFTHTGSWN-GVEIFDDYGHHPVEIRAVLKAAREATSQ 356

Query: 382 --GRIIVV 387
             GR++ +
Sbjct: 357 AGGRVVAI 364


>gi|78356087|ref|YP_387536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|122063243|sp|Q313Q5|MURD_DESDG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78218492|gb|ABB37841.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 447

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 18/119 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           +LAVTGTSGK++  S    + + +G   F  G   T +S +  D          L   +S
Sbjct: 125 VLAVTGTSGKTTTVSLCAAMLRAAGKRVFLGGNIGTPLSEYVLDVAAGEAPADVLVLEVS 184

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               Q  T +  E +                    N+  +H+DYH   Q Y +AK RLF
Sbjct: 185 SFQLQTCTTLRPEVAV-----------------LINISANHLDYHADMQEYLDAKFRLF 226


>gi|300715306|ref|YP_003740109.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
 gi|299061142|emb|CAX58249.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
          Length = 438

 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 31/164 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V  + + +G   +Q+G    I   A    L  P+ +Y+      
Sbjct: 107 IVAITGSNGKSTVTTLVGDMAKAAG---WQVGVGGNIGLPAL-MLLEQPAQLYV------ 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  L+      +K  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 157 ----------LELSSFQLETTA--SLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                 +  ++ ADDA +  V  R  +A C  +S G      HL
Sbjct: 205 ----NAAVCVVNADDAMTFPV--RGLDARC--VSFGINAGDYHL 240


>gi|213650215|ref|ZP_03380268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 370

 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 134/308 (43%), Gaps = 36/308 (11%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +     
Sbjct: 3   PQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY----- 57

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T S+F  D  +    PI L + L++     V  + + A+  G     +   +  A    
Sbjct: 58  -TASNFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALVN 109

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRAH 261
           NL   H++   +      AK  ++  L P+   AI+ AD+            ++V + + 
Sbjct: 110 NLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFSP 168

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           NA     +  +    IH+       +  + T+       D L PLPG   + NAL AA L
Sbjct: 169 NAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAAL 219

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379
            +A+G   A V   L  L  VPGR   +  +    ++ +D A+ +N  S+   ++ +  +
Sbjct: 220 SMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSEM 277

Query: 380 TSGRIIVV 387
              R++VV
Sbjct: 278 PGYRVLVV 285


>gi|323527429|ref|YP_004229582.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
 gi|323384431|gb|ADX56522.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
          Length = 467

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 109/290 (37%), Gaps = 39/290 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    R+   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL T   I              
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIV------------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                 A +   D   L+   +I    TN+  DH+D +    A        F   LP   
Sbjct: 159 ------AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE-GKDF 300
            A++  DD   KE++         ++  G+     +    V A   K   T   E     
Sbjct: 212 IAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPL 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           D    LPGE  V NAL A  +   + +  A +   L   + V  RF+  G
Sbjct: 269 DITLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYG 318


>gi|60117291|gb|AAX14420.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila mojavensis]
          Length = 185

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           +V NAL A  + I +GI  A + + L +   V  RF  +  + +G ++  DYAH  N + 
Sbjct: 3   KVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLIA-DIKGVKLIEDYAHHPNEIY 61

Query: 371 MILKNIRTITSGRII 385
             L   R+IT G++I
Sbjct: 62  ATLTAARSITKGKVI 76


>gi|329895277|ref|ZP_08270919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
 gi|328922399|gb|EGG29742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
          Length = 452

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 27/134 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GKS+V + V ++  ++GL +   G  S  +    D+ +     +Y+      
Sbjct: 117 VIGITGSNGKSTVTTLVGEMLAKAGLRAAVGGNLSPAALAILDDDIE----VYV------ 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS  L+  R + + L      N+  DHID+H +  AY  AK R+F  
Sbjct: 167 ----------LEMSSFQLE--RSNALGLDVAVVLNVTADHIDHHGSMAAYHAAKHRIF-- 212

Query: 237 LLPKESPAIIYADD 250
              +++ A++  DD
Sbjct: 213 ---RKAKAVVVNDD 223


>gi|172059550|ref|YP_001807202.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           MC40-6]
 gi|229486473|sp|B1YSS5|MURC_BURA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171992067|gb|ACB62986.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 121/309 (39%), Gaps = 47/309 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +       +  + +V        L   RL     +  +A+ GT GK
Sbjct: 64  GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELM--RL-----KQGIAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+   
Sbjct: 117 TTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLNLYP 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  V                        TN+  DH+D +    A        F + LP  
Sbjct: 174 VIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRLPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-D 299
             A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG+  
Sbjct: 211 GSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREGRAP 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGR 357
              +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   ++ GG+
Sbjct: 268 LAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQ 327

Query: 358 IYV--DYAH 364
             +  DY H
Sbjct: 328 YTLIDDYGH 336


>gi|169634770|ref|YP_001708506.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           SDF]
 gi|229470259|sp|B0VNZ8|MURC_ACIBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169153562|emb|CAP02734.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii]
          Length = 482

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 8/192 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRV- 246

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  V++ G+ +   I    V     +   T+  +G++        PG   V NAL A 
Sbjct: 247 --GRPVITYGFNEDNDIRAIDVERDGMRSHFTVLRKGREPLRLTINQPGLHNVLNALAAI 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
           G+    G+    +   L+    V  RF+  G    G    ++  DY H    +E  +K  
Sbjct: 305 GVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDDYGHHPKEVEATIKAA 364

Query: 377 RTITSGRIIVVF 388
           R     R +V+ 
Sbjct: 365 RQSHPDRRLVML 376


>gi|238917838|ref|YP_002931355.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
 gi|259509770|sp|C4Z4L9|MURC_EUBE2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238873198|gb|ACR72908.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
          Length = 459

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 32/279 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +N + + GT GK++  S V +I   + +    I     ++S   + R+   +  ++A+A 
Sbjct: 111 KNAINIAGTHGKTTTTSMVSEILLAASMDP-TISVGGILNSIGGNTRVGGDN-YFVAEAC 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y +S     +S   + + +                N+  DH+D+ +          +LF
Sbjct: 169 EYTNS----FLSFNPTMNII---------------LNVKEDHLDFFKDIDD-IRHSFKLF 208

Query: 235 EELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVT 292
            E LP +   II  D D Y         +  C V++ G    K ++     A     + T
Sbjct: 209 TEKLPSDGTLIINTDIDNYEY----FYQDTDCEVITFGSDPAKSMYSASDIAYDELGRCT 264

Query: 293 IS--VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            S  + G+  D +   +PG   VYN+L A      + +D   +   L        RFE  
Sbjct: 265 YSLLINGEKADTITLGVPGLHNVYNSLAAIAATRKLSVDMEHIKAGLSNFKGTNRRFEKK 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           GT   G  +  DYAH  + +   L +       R+ VVF
Sbjct: 325 GT-FNGVTVIDDYAHHPDEIRATLSSAAHYPHNRVWVVF 362


>gi|149184749|ref|ZP_01863067.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
 gi|148832069|gb|EDL50502.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
          Length = 475

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 135/329 (41%), Gaps = 43/329 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS--LFASRLYGKHPENILAVTGTSG 125
            E IVV+SA +++D    I     +  +  TR  L+  LF +   G      +AV GTSG
Sbjct: 76  GEQIVVASA-AIEDSVPEIDRANELGCLRLTRAELNSILFNTSGAG------IAVAGTSG 128

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V   +  I + +G +        TI + A      +P   +   A + + SQ +   
Sbjct: 129 KSTVTGMLGWILEATGRAP-------TIMNGAVMKNFVSPERPF---ASAVVGSQSIYAS 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            V+ S   +  +R        G   N+  DH    + +Q        LF + L +   ++
Sbjct: 179 EVDESDGSIALYRP-----AVGVLLNVSLDHKSMEELRQ--------LFGDYLSRSRISV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---CAIHNKQQVTISVEGKDFD- 301
           I ADD  +  ++ +A +    V++ G +     +  V    A    +Q  + ++  D   
Sbjct: 226 INADDEEALALLPQAKD----VITFGIEQDKAQISIVPGSIAEGPVRQAAMVIDRHDKSE 281

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG   + NAL A     A G+  A  +E L     +  RF+ VGT+     + 
Sbjct: 282 QALRLNMPGRHNLSNALAAIAGAAAAGVPVAASVEALAGFEGLARRFDIVGTSHAAITVI 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            D+ H        L+ +R   SGR++V F
Sbjct: 342 DDFGHNPEKCAATLRTLRA-HSGRVLVFF 369


>gi|325860151|ref|ZP_08173276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
 gi|325482238|gb|EGC85246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
          Length = 437

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 73/369 (19%), Positives = 144/369 (39%), Gaps = 41/369 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           V++DSR    G IF+A+ G   DG+ F   A+ +G   A+V    Y+  D       +  
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKAD-------DGR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+        A     + P  ++ +TGT+GK++    +  +        F +  T 
Sbjct: 69  YILVDDALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLS----EKFNVHHTE 124

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L       +  + + AS  G  +  +  ++   G  TN
Sbjct: 125 A----NYNNDVGVPRTL-----LGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H+    + +     K  L++ L  K    +++ +++    +   A     R+++ G
Sbjct: 176 VGRAHLQGFGSFEGVKRTKGELYDFL--KAHDGLLFLNESNVDLMEMAAQREFSRIITYG 233

Query: 272 ------YQGKFIH----LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  QG  +     LK +    + Q  + + E +       L G + + N L A  +
Sbjct: 234 QDETADVQGNVVSCAPFLKFIWQALSHQPSSGTCEVQTH-----LIGSYNLDNMLAAIAI 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +  G+    V   LE  + +P       T +   R+ VD Y    +S+   ++N R + 
Sbjct: 289 GLHFGVTPQQVCHALE--NYIPHNNRSQLTETAHNRLIVDAYNANPSSMAAAIENFRLMQ 346

Query: 381 SGRIIVVFG 389
               + + G
Sbjct: 347 VKDKMAILG 355


>gi|82703608|ref|YP_413174.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411673|gb|ABB75782.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
          Length = 522

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 94/266 (35%), Gaps = 48/266 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S +  +   +G+      PT  I                L  A S+ 
Sbjct: 137 IAIAGTHGKTTTTSLITSVLAEAGMD-----PTFVIGG-------------RLEAAGSHA 178

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + VEA         L  +  +    TN+  DH+D ++            F + 
Sbjct: 179 KLGRGEFIVVEADESDASFLHLQPVLAV---VTNIDADHMDTYEHDFGKLKQAFVDFVQH 235

Query: 238 LPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           LP    A++  DDA+  E+M            +  A  R   + +    +H   +  ++ 
Sbjct: 236 LPFYGMAVLCVDDAHVLEIMPAITKPVTTYGLSETAQVRAADIRHSEGQMHFTALIGVNG 295

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K         +    +  LPG   V NAL A  +C  +G+    ++  L     V  RF+
Sbjct: 296 KT--------RKLKIVLNLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQ 347

Query: 348 FVG----TNSRGGR-----IYVDYAH 364
             G    T+   GR     +  DY H
Sbjct: 348 RYGEIPLTDPETGRNGSFTLIDDYGH 373


>gi|269101761|ref|ZP_06154458.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161659|gb|EEZ40155.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 472

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 134/337 (39%), Gaps = 53/337 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  +VVS+A S ++          I VV        L   R       + +A+ GT G
Sbjct: 66  EGASVVVVSTAISQENPELVAARELRIPVVRRAEMLAELMRYR-------HGIAIAGTHG 118

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  + V QI   +GL  +F  G    + S   + RL   S   +A+A     S+L  Q
Sbjct: 119 KTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGC-SRYLIAEADESDASFLHLQ 175

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEE 236
            +  V     +  +D +         G F  L +  ID+      Y  A M     +  E
Sbjct: 176 PMVCVVTNIEADHMDTY--------GGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVRE 227

Query: 237 LLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           LLP+   P + Y    +S++   R  +        G QG F  ++K     +K ++ +++
Sbjct: 228 LLPRVGRPMLTY---GFSEDADVRLMD----YQQCGQQGFFTIVRK-----DKPELKVTL 275

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TN 352
                     +PG     NA  A  +    G+D   ++  L +      RF+ +G   T 
Sbjct: 276 N---------VPGRHNALNATAAVAVATEEGVDDDAIIRALAEFQGTGRRFDHLGEFETG 326

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           +    +  DY H  + +++ ++  R      R+++VF
Sbjct: 327 NGTAMLVDDYGHHPSEVDVTIQAARAGWPDKRLVMVF 363


>gi|297588764|ref|ZP_06947407.1| possible tetrahydrofolate synthase [Finegoldia magna ATCC 53516]
 gi|297574137|gb|EFH92858.1| possible tetrahydrofolate synthase [Finegoldia magna ATCC 53516]
          Length = 415

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 148/392 (37%), Gaps = 71/392 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSS--------------FQIGPTSTISSFAQ---- 158
           I+ V GT+GK S ++F+ Q  +  G  +               +I    +   F +    
Sbjct: 41  IIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFMRIFEI 100

Query: 159 --------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI----KLIA 206
                   D +++T   I L  A+ Y + Q   +V +E    G    RLD      + + 
Sbjct: 101 IKDTIEENDIKVSTFEFITLC-AIYYFAEQKCEYVVLEVGMGG----RLDATNATDETLL 155

Query: 207 GSFTNLGRDHIDY---HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              T +G DH +Y      + AY  A       ++ +    ++Y       +V +     
Sbjct: 156 SVITKIGLDHQEYLGNTLEEIAYEKAC------IMKQNGRCVVYDQQESVLDVFREVAEE 209

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVA 318
               L +            C     + + I+     FD+        L G +Q+YNA +A
Sbjct: 210 RNNKLYI------------CDFDEAKNIEINATYNSFDWKNLHIETRLVGRYQLYNAQLA 257

Query: 319 AGLCIAIGIDSALVLEHL---EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                 +  +  L  E +    K   +P RF+ +  N     +  D  H ++ ++ +  +
Sbjct: 258 LSAIDVLRDELDLSDEDIIKGFKNAYIPARFDVIRHNPT---VIYDGGHNADGVKALKSS 314

Query: 376 IRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           I ++    +I+ V+G   D+D      +  I  +       T D+PR+   E ++ +I  
Sbjct: 315 IESVFGDKKIVFVYGVLKDKDYDDEIKL--IHENAKAFVTFTPDSPRALKAEDLKKQIEA 372

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                + K N  +A+  AIE   K DV+++ G
Sbjct: 373 YSDNVVAKSNVNDAVDYAIEHF-KDDVIIIFG 403


>gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl]
 gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            + S DSR   AG  F+A+   + DGH +IP A+A GA  I+ +        +AT     
Sbjct: 25  TDWSYDSRLTVAGECFIALRTTRADGHDYIPAALAAGARGILCTRPPH-DAGTAT----- 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            ++V  + +  L  +AS    +    ++AVTG  GK+
Sbjct: 79  -VVVCPDPQALLLRWASNRLQRLQPTVIAVTGGIGKT 114


>gi|110634359|ref|YP_674567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mesorhizobium
           sp. BNC1]
 gi|118595664|sp|Q11GS3|MURD_MESSB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110285343|gb|ABG63402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chelativorans sp.
           BNC1]
          Length = 467

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 32/196 (16%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           R++  H   ++A+TGT+GKS+  +    + + +G  + Q+G     +    D  +     
Sbjct: 108 RMHAAHAP-LVAITGTNGKSTTTALTAHVLKAAGRDT-QMGGNIGRAVMTLDPPVAD--- 162

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                           H  +E SS+ +D      +   AG   N+  DH+D H T + Y 
Sbjct: 163 ---------------RHYVLECSSYQIDLSPT--LNPTAGVLLNITPDHLDRHGTMENYA 205

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH------LKK 281
             K    E L+     AII  DD Y + V  R   AG +V  +   G           + 
Sbjct: 206 AIK----ERLVAGSDTAIIGVDDEYCRAVADRLEKAGRKVSRISLTGTLEDGFFADGTQL 261

Query: 282 VCAIHNKQQVTISVEG 297
             A   K +   S+EG
Sbjct: 262 FRAGQGKAEPLFSLEG 277


>gi|300021779|ref|YP_003754390.1| UDP-N-acetylmuramate/alanine ligase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523600|gb|ADJ22069.1| UDP-N-acetylmuramate/alanine ligase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 478

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH--NAG 264
           G  TN+  +H+DY  + +A  + +   F + +P    A+   D    +++++R +    G
Sbjct: 178 GIVTNIDPEHLDYFGSVEAMHH-EYEAFLKNIPFFGLAVACIDHPVVRDMIERLNLRADG 236

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQ----QVTISVEG---KDFDFLFPLPGEFQVYNAL 316
            R+L+ G  Q   + L+ +    N       +T SV+G   K  D+  P+PG     NAL
Sbjct: 237 RRLLTYGQSQDADLVLQSIRIEGNTTYFDATLTASVKGGARKLTDWSVPIPGAHNALNAL 296

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +    G++ A +   +     V  RF+F G    G  IY DY H    +  +L   
Sbjct: 297 AAIAVATQAGLEDAKIKAAMAGFSGVKRRFQFTG-EWNGVGIYDDYGHHPAEISAVLAAA 355

Query: 377 RTITSGRIIVV 387
           R  T G++I V
Sbjct: 356 RGGTKGKVIAV 366


>gi|30022001|ref|NP_833632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 14579]
 gi|228960130|ref|ZP_04121794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229129190|ref|ZP_04258163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|229146484|ref|ZP_04274855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|60390083|sp|Q819Q2|MURD_BACCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29897557|gb|AAP10833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 14579]
 gi|228637117|gb|EEK93576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|228654427|gb|EEL10292.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|228799646|gb|EEM46599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 450

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 22/207 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G ++L S   + +     K  A++ K +  I V          LPG
Sbjct: 227 A---DVMALSAYSKGQKILFSTTKEIEDGACIKDNALYFKGEKVIEVSD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSN 367
           +  + N L A  +   +G  +  +   L++   V  R E+V T N+R  + Y D    S 
Sbjct: 278 QHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYND----SK 331

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDR 394
           +  M+          + IV+   G DR
Sbjct: 332 ATNMLATEKALSAFTQPIVLLAGGLDR 358


>gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510]
 gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510]
          Length = 821

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 34/232 (14%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           R  +I+ + +DSR +      +F A+   + DGH ++P+   +G    VV       +  
Sbjct: 20  RSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVVG------ELP 73

Query: 84  ATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           A ++S  +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ Q+     
Sbjct: 74  ADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQL----- 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRL 199
           LS  ++    T S  + ++++  P  ++L    + L+    G++ +    +   +     
Sbjct: 129 LSPDRV---VTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTI----- 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD 250
             IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   IIY  D
Sbjct: 181 --IKPTVGILTNIGGAH------QENFFSLQDKCMEKLTLFKDCDVIIYDGD 224


>gi|163784268|ref|ZP_02179185.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880457|gb|EDP74044.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 237

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            +K+N    DSR  + G  FV + GN  DGH FI +   +GA             FS+  
Sbjct: 19  NKKVNRFIIDSRQAKKGDFFVPLKGNNVDGHQFIDEVFKKGA----------FGSFSSKN 68

Query: 87  RSNTPILVVDNTRKFLS 103
              + +LVVD+T K L+
Sbjct: 69  IEKSNVLVVDDTLKALT 85


>gi|303236845|ref|ZP_07323424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
 gi|302483013|gb|EFL46029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 182/432 (42%), Gaps = 63/432 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           +++DSR    G IF+A+ G   +G+ F   A+ +G   AI+    Y+ +       ++  
Sbjct: 16  ITTDSRECPQGSIFIALKGASFNGNKFAKMALEKGCSYAIIDEKEYAEEG------NDRL 69

Query: 92  ILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           ILV D    F  +  +RL+ +    P  ++ +TGT+GK++    +      S + S +  
Sbjct: 70  ILVKDALVAFKKI--ARLHRREFHIP--VIGITGTNGKTTSKELI------SAVLSEKYN 119

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIAG 207
              T  +F  D        + + K L  L  +    V    +SH  D  +L + ++   G
Sbjct: 120 VLHTEGNFNND--------VGVPKTLLRLDGKHEIAVIEMGASHQGDIKKLVEYVEPTCG 171

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+GR H++   + +     K  L++ L  K +  +++ +++        A     R+
Sbjct: 172 LITNVGRAHLEGFGSFEGVKLTKGELYDYL--KANDCLLFLNESNPDLSEMAAQRNFERI 229

Query: 268 LSVG------YQGKFIHLKKVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +S G       QG+ I     CA  +H + +  +  E K  + +  L G + + N L A 
Sbjct: 230 ISYGQNDMVNVQGEIID----CAPFLHFRWR-EVGSEWK--EVMTHLVGAYNLDNMLAAI 282

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIR 377
            L +   +    +   LE    VP       T +   ++ VD A+ +N   M+  ++N R
Sbjct: 283 ALGLHFSVAPQQICHALETY--VPSNNRSQLTETVHNKLVVD-AYNANPSSMVAAIENFR 339

Query: 378 TITSGRIIVVFG----CGGDRDQGKRPIMGKI-ALDLADIAIVTD-------DNPRSEDP 425
            +     + + G     G   D   + ++ ++ A  L ++ +V +       D  +  D 
Sbjct: 340 LMNVENKMAILGDMRELGEVTDVEHQKVVEQLKAAGLTNVWLVGENFGKTNTDFKKFHDV 399

Query: 426 EKIRAEIIHGIP 437
           E+++AEI    P
Sbjct: 400 EEVKAEIAKAQP 411


>gi|290476452|ref|YP_003469357.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
 gi|289175790|emb|CBJ82593.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
          Length = 491

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 60/343 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  +V S+A S  +          I V+        L   R +G      +A+ GT G
Sbjct: 77  RGASVVVASTAISADNPEIIAAREARIPVIRRAEMLAELMRYR-HG------IAIAGTHG 129

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  + +  I  ++GL  +F  G    + +     RL T S   +A+A     S+L  Q
Sbjct: 130 KTTTTAMIAGIYAQAGLDPTFVNG--GLVKAAGTHARLGT-SRYLIAEADESDASFLHLQ 186

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D +Q            F   LP 
Sbjct: 187 PMVAV-----------------------ITNIEADHMDTYQGDFENLKQTFVNFLHNLPF 223

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-----TISV 295
              A++  DD   KE++ R    G  + + G+  +      +   H +Q+      TIS 
Sbjct: 224 YGRAVMCIDDPVVKELIPR---IGRYITTYGFSEE----ADIRITHYEQKAAQGFFTISR 276

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
           +   +   +   PG     NA  A  +    GI+ A +L  L +      RF+F+G    
Sbjct: 277 DDLPELHVVLNAPGRHNALNATAAVAVATEEGINDAAILASLAEFQGTGRRFDFLGEFSL 336

Query: 352 ---NSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
              N + GR+ +  DY H    ++  +K  R      RI+++F
Sbjct: 337 KHINGKEGRVMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLF 379


>gi|229111382|ref|ZP_04240935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
 gi|228672158|gb|EEL27449.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
          Length = 450

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 22/207 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G ++L S   + +     K  A++ K +  I V          LPG
Sbjct: 227 A---DVMALSAYSKGQKILFSTTKEIEDGACIKDNALYFKGEKVIEVSD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSN 367
           +  + N L A  +   +G  +  +   L++   V  R E+V T N+R  + Y D    S 
Sbjct: 278 QHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYND----SK 331

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDR 394
           +  M+          + IV+   G DR
Sbjct: 332 ATNMLATEKALSAFTQPIVLLAGGLDR 358


>gi|254470266|ref|ZP_05083670.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
 gi|211960577|gb|EEA95773.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
          Length = 473

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D + P+PG   V NA  A  L  ++GI    + + L     V  RF   G+   G   + 
Sbjct: 277 DLVLPMPGLHNVSNATAAIALAHSLGISGENIRKGLASFGGVKRRFTHTGS-WNGVEFFD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF 388
           DYAH    ++ +L   R    G++I V 
Sbjct: 336 DYAHHPVEIKSVLHAAREAAEGKVIAVM 363


>gi|170700184|ref|ZP_02891202.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
 gi|170134916|gb|EDT03226.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 121/309 (39%), Gaps = 47/309 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +       +  + +V        L   RL     +  +A+ GT GK
Sbjct: 64  GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELM--RL-----KQGIAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+   
Sbjct: 117 TTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLNLYP 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  V                        TN+  DH+D +    A        F + LP  
Sbjct: 174 VIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRLPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-D 299
             A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG+  
Sbjct: 211 GSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREGRAP 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGR 357
              +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   ++ GG+
Sbjct: 268 LAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQ 327

Query: 358 IYV--DYAH 364
             +  DY H
Sbjct: 328 YTLIDDYGH 336


>gi|159900033|ref|YP_001546280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893072|gb|ABX06152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 489

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 108/484 (22%), Positives = 182/484 (37%), Gaps = 74/484 (15%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       I     DSR      +FVA+ G + DGH FI  A A+G  A +V     L 
Sbjct: 21  LPAALANLPIRSACIDSREASVDGLFVALQGERVDGHDFIAAAAARGVRAALVQRG-RLA 79

Query: 81  DFS---------------ATIRSNTP-----ILVVDNTRKFLSLFASRLYGKHPENILAV 120
           D S                 I +  P     ++ VD T   +   A+R   +    ++ +
Sbjct: 80  DPSQLGLDRPFVLLDPDQGQIANEAPANAFFLISVDQTLTAMHRLATRYRQQQDLVVVGI 139

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSY 176
           TG+ GK+S    +          +  + PT     +  S+  +N L    P+ +   L  
Sbjct: 140 TGSVGKTSTKEVL----------AAMLAPTMRTHKSPRSYNSENTL----PLVV---LGI 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +  + +   + G     L  +  IA    G  TN+G  H++   T +    AK  
Sbjct: 183 EPEHQIAVLEMGIYNKG----DLALLTTIAQPQIGIVTNVGASHLERMHTIENVAEAKSE 238

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L +  LP +  AI+  DD   +  M++   A  +V + G   +               + 
Sbjct: 239 LVQA-LPADGWAILNYDDQRVR-AMQQVTKA--QVFTYGLDPEADLWADNIESRGLDGIG 294

Query: 293 ISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                 G+ +    PL G   V+ AL AA + I +G+    +++ L        +   + 
Sbjct: 295 FDAHYRGEQWHIKLPLIGLHSVHTALAAAAVGIVLGLSWDSLIQGLRS----SAQLRLLS 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
             + GG   +D  + ++ +  I   N+     GR I VFG     G  D+    ++G  A
Sbjct: 351 YPAVGGATLIDDTYNASPVSCIAALNLLAELQGRRIAVFGDMAELGPHDESGHRLVGVRA 410

Query: 407 LDLADIAIVTDDNPRSEDPEKIR----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D+ D   V  +  R    E I     AE +H +P   +K   I A+++    L   D +
Sbjct: 411 ADVVDQLYVVGEKARWIGEEAIEVGLPAEQVHVLP---DKAALIAALQST---LQANDYV 464

Query: 463 VVAG 466
           +V G
Sbjct: 465 LVKG 468


>gi|17986863|ref|NP_539497.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|23502301|ref|NP_698428.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis 1330]
 gi|62290323|ref|YP_222116.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700247|ref|YP_414821.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis biovar
           Abortus 2308]
 gi|148560387|ref|YP_001259323.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ovis ATCC 25840]
 gi|161619378|ref|YP_001593265.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella canis ATCC 23365]
 gi|163843686|ref|YP_001628090.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis ATCC 23445]
 gi|189024556|ref|YP_001935324.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus S19]
 gi|225627881|ref|ZP_03785917.1| UDP-N-acetylmuramate--alanine ligase [Brucella ceti str. Cudo]
 gi|225852912|ref|YP_002733145.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis ATCC
           23457]
 gi|237815830|ref|ZP_04594827.1| UDP-N-acetylmuramate--alanine ligase [Brucella abortus str. 2308 A]
 gi|254689624|ref|ZP_05152878.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 6 str.
           870]
 gi|254694114|ref|ZP_05155942.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697766|ref|ZP_05159594.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702151|ref|ZP_05163979.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|254704688|ref|ZP_05166516.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|254708102|ref|ZP_05169930.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|254710471|ref|ZP_05172282.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|254714464|ref|ZP_05176275.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M644/93/1]
 gi|254717362|ref|ZP_05179173.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M13/05/1]
 gi|254730655|ref|ZP_05189233.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 4 str.
           292]
 gi|256031965|ref|ZP_05445579.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|256045060|ref|ZP_05447961.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113983|ref|ZP_05454766.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|256160164|ref|ZP_05457858.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M490/95/1]
 gi|256255370|ref|ZP_05460906.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti B1/94]
 gi|256257874|ref|ZP_05463410.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|256263607|ref|ZP_05466139.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369846|ref|YP_003107357.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella microti CCM 4915]
 gi|260169102|ref|ZP_05755913.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella sp. F5/99]
 gi|260546865|ref|ZP_05822604.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus NCTC 8038]
 gi|260565341|ref|ZP_05835825.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|260755152|ref|ZP_05867500.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 6
           str. 870]
 gi|260758371|ref|ZP_05870719.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 4
           str. 292]
 gi|260762197|ref|ZP_05874540.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884165|ref|ZP_05895779.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|261214414|ref|ZP_05928695.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 3
           str. Tulya]
 gi|261219193|ref|ZP_05933474.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M13/05/1]
 gi|261222572|ref|ZP_05936853.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti B1/94]
 gi|261315605|ref|ZP_05954802.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|261318043|ref|ZP_05957240.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|261322254|ref|ZP_05961451.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M644/93/1]
 gi|261752721|ref|ZP_05996430.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|261755381|ref|ZP_05999090.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|261758609|ref|ZP_06002318.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. F5/99]
 gi|265989074|ref|ZP_06101631.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|265991487|ref|ZP_06104044.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995325|ref|ZP_06107882.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|265998537|ref|ZP_06111094.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M490/95/1]
 gi|297248710|ref|ZP_06932428.1| UDP-N-acetylmuramate-alanine ligase [Brucella abortus bv. 5 str.
           B3196]
 gi|306843223|ref|ZP_07475834.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO2]
 gi|54037855|sp|P65469|MURC_BRUSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041505|sp|P65468|MURC_BRUME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|75496536|sp|Q57C79|MURC_BRUAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892694|sp|Q2YLY6|MURC_BRUA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222961|sp|A5VRH6|MURC_BRUO2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028976|sp|A9M689|MURC_BRUC2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028977|sp|B0CHL9|MURC_BRUSI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229486472|sp|B2S6Q3|MURC_BRUA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765986|sp|C0RE69|MURC_BRUMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17982501|gb|AAL51761.1| udp-n-acetylmuramate--alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|23348277|gb|AAN30343.1| UDP-N-acetylmuramate--alanine ligase [Brucella suis 1330]
 gi|62196455|gb|AAX74755.1| MurC, UDP-N-acetylmuramate--alanine ligase [Brucella abortus bv. 1
           str. 9-941]
 gi|82616348|emb|CAJ11405.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramate--ala [Brucella
           melitensis biovar Abortus 2308]
 gi|148371644|gb|ABQ61623.1| UDP-N-acetylmuramate--alanine ligase [Brucella ovis ATCC 25840]
 gi|161336189|gb|ABX62494.1| UDP-N-acetylmuramate--alanine ligase [Brucella canis ATCC 23365]
 gi|163674409|gb|ABY38520.1| UDP-N-acetylmuramate--alanine ligase [Brucella suis ATCC 23445]
 gi|189020128|gb|ACD72850.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus S19]
 gi|225617044|gb|EEH14090.1| UDP-N-acetylmuramate--alanine ligase [Brucella ceti str. Cudo]
 gi|225641277|gb|ACO01191.1| UDP-N-acetylmuramate--alanine ligase [Brucella melitensis ATCC
           23457]
 gi|237789128|gb|EEP63339.1| UDP-N-acetylmuramate--alanine ligase [Brucella abortus str. 2308 A]
 gi|256000009|gb|ACU48408.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella microti CCM 4915]
 gi|260095915|gb|EEW79792.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus NCTC 8038]
 gi|260151409|gb|EEW86503.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|260668689|gb|EEX55629.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 4
           str. 292]
 gi|260672629|gb|EEX59450.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675260|gb|EEX62081.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 6
           str. 870]
 gi|260873693|gb|EEX80762.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|260916021|gb|EEX82882.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 3
           str. Tulya]
 gi|260921156|gb|EEX87809.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti B1/94]
 gi|260924282|gb|EEX90850.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M13/05/1]
 gi|261294944|gb|EEX98440.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M644/93/1]
 gi|261297266|gb|EEY00763.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|261304631|gb|EEY08128.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|261738593|gb|EEY26589.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. F5/99]
 gi|261742474|gb|EEY30400.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|261745134|gb|EEY33060.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|262553161|gb|EEZ08995.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M490/95/1]
 gi|262766438|gb|EEZ12227.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|263002271|gb|EEZ14846.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093658|gb|EEZ17663.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 2
           str. 63/9]
 gi|264661271|gb|EEZ31532.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|297175879|gb|EFH35226.1| UDP-N-acetylmuramate-alanine ligase [Brucella abortus bv. 5 str.
           B3196]
 gi|306286588|gb|EFM58165.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO2]
 gi|326409454|gb|ADZ66519.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis M28]
 gi|326539160|gb|ADZ87375.1| UDP-N-acetylmuramate--alanine ligase [Brucella melitensis M5-90]
          Length = 471

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 14/188 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  +   R+++
Sbjct: 181 TNIDPEHLDHYGNFDA-VRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDR--RIIT 237

Query: 270 VG----YQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLC 322
            G     + +F++ +   A      V  S +G+     D   P+PG   V NA  A  + 
Sbjct: 238 YGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATAAIAVA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI S  +   L     V  RF   G+ + G  I+ DY H    +  +LK  R  TS 
Sbjct: 298 HELGISSDDIRRGLGSFGGVKRRFTHTGSWN-GVEIFDDYGHHPVEIRAVLKAAREATSQ 356

Query: 382 --GRIIVV 387
             GR++ +
Sbjct: 357 AGGRVVAI 364


>gi|315225589|ref|ZP_07867398.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
 gi|314944406|gb|EFS96446.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 116/289 (40%), Gaps = 46/289 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           I+ +TG++GK++       I + +GL   Q+G    I  SFA+   + T +P Y    +S
Sbjct: 104 IVGITGSNGKTTTTLLTYHIFKEAGL---QVGLGGNIGYSFAE--LVATENPPYYVLEIS 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
                G+ H +   +                    N+  DH+D Y    + Y N+K R+ 
Sbjct: 159 SFQLDGIEHFAPHIA-----------------VLLNITPDHLDRYDYKFENYINSKFRI- 200

Query: 235 EELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNK 288
             +   E+  +IY ADD    + +   H    +++         QG F+   K+  +   
Sbjct: 201 -AMNQTENDYLIYDADDEVITQWLS-THTIKSKLIPFSIEKELPQGAFLKDNKIYIMLEN 258

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q   I VE         L G+  + N + A+     + I +  + E L+     P R E 
Sbjct: 259 QTTEIDVEE------ISLRGKHNIKNTMAASVAARLVNIRNNSLRESLKGFKGAPHRLEE 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           V      G  YV+ +  +N +  +   + TI +  + +V    G +D+G
Sbjct: 313 VKVVD--GVTYVNDSKATN-VNSVFYALDTIKTPIVWIV----GGQDKG 354


>gi|285017564|ref|YP_003375275.1| hypothetical protein XALc_0769 [Xanthomonas albilineans GPE PC73]
 gi|283472782|emb|CBA15287.1| conserved hypothetical protein [Xanthomonas albilineans]
          Length = 458

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 143/355 (40%), Gaps = 67/355 (18%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           ++P+ I      ++V +A S        R N  +  V+D  R ++S    L    L G+ 
Sbjct: 54  YLPEHIEADCAQVIVGNALS--------RGNLAVEAVLDAGRAYISGAQWLSEQVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTP-----SP 167
               LAV GT GK++  S +  + Q +G    F IG  +    F    RL  P      P
Sbjct: 105 --ETLAVAGTHGKTTTTSILTWLLQSAGREPGFLIGGVA--EDFGVSARLGGPVAAPQRP 160

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           +++ +A  Y ++        +  S  +    L  I        NL  DH D         
Sbjct: 161 LFVVEADEYDTA------FFDKRSKFVHYRPLVAI------LNNLEYDHADIFPD----V 204

Query: 228 NAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKV 282
            A  R F  L+   P     I+  +DA+ +EV+      GC   V   G+   F    ++
Sbjct: 205 AAIQRQFHHLVRTVPHRGRLIVNGEDAHLREVLA----MGCWTPVERFGFDPGFDWSARL 260

Query: 283 CA--------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            A        +H  QQ+ + VE       + L G   V NAL A     A+G+  A V+ 
Sbjct: 261 LAADGSRFAVLHAGQQLGV-VE-------WSLLGRHNVMNALAALAAAHAVGVAPAQVIP 312

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            L +   V  R E +G  ++G  +Y D+AH   ++   L+ +R  + + RI+V  
Sbjct: 313 ALARFRSVKRRLEVLG-QAQGITVYDDFAHHPTAIRTTLEGLRAKVGTARIVVAM 366


>gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
 gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
          Length = 821

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 34/232 (14%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           R  +I+ + +DSR +      +F A+   + DGH ++P+   +G    VV       +  
Sbjct: 20  RSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVVG------ELP 73

Query: 84  ATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           A ++S  +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ Q+     
Sbjct: 74  ADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQL----- 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRL 199
           LS  ++    T S  + ++++  P  ++L    + L+    G++ +    +   +     
Sbjct: 129 LSPDRV---VTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTI----- 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD 250
             IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   IIY  D
Sbjct: 181 --IKPTVGILTNIGGAH------QENFFSLQDKCMEKLTLFKDCDVIIYDGD 224


>gi|225454866|ref|XP_002275450.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 307

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 20/125 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ILA TGT+GKS++A+F  Q+    G+     G      S A    LT PSP         
Sbjct: 42  ILAATGTNGKSTIATFSGQMLSHLGIEVIVEGNLGIPLSEAAIQCLTCPSP--------- 92

Query: 177 LSSQGVTHVS-VEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              + V  V+ VE SS+ L+   +H    +  + G   +L  DH++ H+T + Y   K R
Sbjct: 93  ---KPVFQVAVVEVSSYQLEVPNKHFCPSV--VVG--LDLTSDHLERHKTMKNYAITKCR 145

Query: 233 LFEEL 237
           L   +
Sbjct: 146 LLSHM 150


>gi|21244161|ref|NP_643743.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109793|gb|AAM38279.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 452

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 135/345 (39%), Gaps = 53/345 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           + P  I+  A  +VV +A S        R N  +  V+D  R++ S    L    L G+ 
Sbjct: 54  YAPSNISLDATEVVVGNALS--------RRNPAVEAVLDAGRRYTSGAQWLAEQVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + LAV GT GK++  + +  + + +G +     P   I   A+D              
Sbjct: 105 --DTLAVAGTHGKTTTTTILSYLLEAAGRA-----PGFLIGGVAEDF------------G 145

Query: 174 LSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +S    QG   V VEA  +       + +    + +     NL  DH D      A    
Sbjct: 146 VSARLGQGREFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAI--- 201

Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCA 284
             R F  L+   P     I+  +DA+  EV+      GC   V   G++       ++ A
Sbjct: 202 -QRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTPVERFGFEASLDWSARLIA 256

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   +    +     +PL G   V N L A     A+G+D A V+  L +   V  
Sbjct: 257 ADGSAFAVLHRGVEIGQVQWPLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVKR 316

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           R E +G N+R   +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 317 RLEVIG-NARDITVYDDFAHHPTAIATTLQGLRAKVGAARVVVAM 360


>gi|257899138|ref|ZP_05678791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
 gi|257837050|gb|EEV62124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
          Length = 453

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 22/191 (11%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   HIDYH T++ Y  AK  L + +  ++   + +       E+ + A     RVL
Sbjct: 188 ITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLNWNQS----ELQELAQRTKARVL 243

Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               +      ++       + K+++  IS  G        +PG   V NAL A  +   
Sbjct: 244 PFSTKEVLEDGVYADDHAIYYRKEKIMEISELG--------VPGTHNVENALAAITVAKL 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGR 383
            G+ +  + + L   H VP R ++VG   +G + Y D   T+  + +M L    T     
Sbjct: 296 YGVSNEAIRQTLHLFHGVPHRTQYVG-EIQGRKFYNDSKATNILATKMALSGFETAK--- 351

Query: 384 IIVVFGCGGDR 394
            +V+   G DR
Sbjct: 352 -VVLLAGGLDR 361


>gi|220925312|ref|YP_002500614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate/D-alanyl-D-alanyl ligase
          [Methylobacterium nodulans ORS 2060]
 gi|219949919|gb|ACL60311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate/D-alanyl-D-alanyl ligase
          [Methylobacterium nodulans ORS 2060]
          Length = 494

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
          +S D+R ++ G +F AI G   DGH F+  A+A+GA A VVS A      +A +  + P+
Sbjct: 39 LSIDTRTLKVGDLFFAIRGETRDGHDFVRDALARGAGAAVVSQAR-----AAELAGSGPL 93

Query: 93 LVV 95
          +VV
Sbjct: 94 VVV 96


>gi|150004319|ref|YP_001299063.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides vulgatus ATCC 8482]
 gi|149932743|gb|ABR39441.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides vulgatus ATCC 8482]
          Length = 821

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 34/232 (14%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           R  +I+ + +DSR +      +F A+   + DGH ++P+   +G    VV       +  
Sbjct: 20  RSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVVG------ELP 73

Query: 84  ATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           A ++S  +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ Q+     
Sbjct: 74  ADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQL----- 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRL 199
           LS  ++    T S  + ++++  P  ++L    + L+    G++ +    +   +     
Sbjct: 129 LSPDRV---VTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTI----- 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD 250
             IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   IIY  D
Sbjct: 181 --IKPTVGILTNIGGAH------QENFFSLQDKCMEKLTLFKDCDVIIYDGD 224


>gi|296448265|ref|ZP_06890159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylosinus
           trichosporium OB3b]
 gi|296254217|gb|EFH01350.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylosinus
           trichosporium OB3b]
          Length = 473

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 66/158 (41%), Gaps = 28/158 (17%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TGT+GKS+  + +  I +R+G    Q+G    I +   D  L  P          
Sbjct: 115 TFIAITGTNGKSTTTALIAHILRRAG-KDVQLG--GNIGTPILD--LEPP---------- 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S+   HV +E SS  +D      +    G   NL  DHID H T   Y   K RL +
Sbjct: 160 ---SEERIHV-IECSSFQIDL--TPSLAPTIGILINLTPDHIDRHGTMDDYAAVKERLVD 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSV 270
                   A+I  DD Y   +  R   AH  G RV+ V
Sbjct: 214 ----GADIALIGVDDVYCHAIGARLTQAHCEGQRVIPV 247


>gi|78779845|ref|YP_397957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9312]
 gi|118595673|sp|Q319C4|MURD_PROM9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78713344|gb|ABB50521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 468

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 91/241 (37%), Gaps = 31/241 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           N + +TGT+GK++V   +  I C+    + F     + +  +A   +             
Sbjct: 121 NWIGITGTNGKTTVTHLLSHILCENKLYAPFAGNIGTPLCKYAYSKKY------------ 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                + +  V  E SS+ ++      +K   G +T    DH++ H+T + YFN K  L 
Sbjct: 169 -----EKIDWVVAELSSYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSLL 221

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E     +S   IY  D  +      + + G  + +   +  FI     C      Q  I 
Sbjct: 222 E-----KSDFRIYNYDDKNLRNHYSSLSKGVWITTSLDKSNFIQ----CDYWIDDQAFII 272

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             GK    L  F L G   + N L+       +G+    + + L     +P R E +  N
Sbjct: 273 ERGKRLFKLEHFSLKGIHNLQNLLLVIAAARKVGLSGKKIKDSLSNYKQLPHRMETIYKN 332

Query: 353 S 353
           +
Sbjct: 333 N 333


>gi|254475825|ref|ZP_05089211.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
 gi|214030068|gb|EEB70903.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
          Length = 465

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G++S+ +   L     V  RF  VG    G  I  DY 
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMNSSEIRAALAAFGGVNRRFTKVG-EVDGVTIIDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R    GR+I V
Sbjct: 339 HHPVEIAAVLKAARQACDGRVIAV 362


>gi|119717289|ref|YP_924254.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nocardioides
           sp. JS614]
 gi|119537950|gb|ABL82567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nocardioides sp.
           JS614]
          Length = 488

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 20/123 (16%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L VTGT+GK++    +  I + +GL S  +G                  PI  A 
Sbjct: 120 HRTPWLCVTGTNGKTTTVQMLDSILRAAGLRSIAVGNVGL--------------PIVEA- 164

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
               +  +    ++VE SS  L  H  D +   A +  N+  DH+D++ +  AY   K R
Sbjct: 165 ---VMDPEPYDVLAVELSSFQL--HYTDSMSAEAAAVLNVAEDHLDWYSSFGAYAADKGR 219

Query: 233 LFE 235
           ++E
Sbjct: 220 IYE 222


>gi|114566364|ref|YP_753518.1| UDP-N-acetylmuramate--alanine ligase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|123322290|sp|Q0AYQ7|MURC_SYNWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114337299|gb|ABI68147.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 465

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 28/222 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+DY+++      A  +  E++ P E  A++Y  DA+++ ++K       R+L 
Sbjct: 181 TNVEDDHLDYYKSVDNIRKAFRQFVEQIRP-EGFAMLYGGDAFNRSLVKDL-TLNKRLLF 238

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNALVA 318
            G       L       N + + +   G  FD           F   +PG+    NAL A
Sbjct: 239 YGED-----LSNDYYFLNWESIGL---GSHFDVYKRELGFLGRFELAVPGKHNALNALAA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + +G++   +   L+  H    RF+  G  +    +  DYAH    +   +   R 
Sbjct: 291 IASALELGLEMEPIKSALKNFHGARRRFQIQGQKAL-VTVVDDYAHHPTEIRATIDAARN 349

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTD 417
             SGR+IVV+         +  ++G+    AL  AD+AI+T+
Sbjct: 350 FHSGRVIVVY---QPHRYSRTQLLGRQLGEALINADLAIITE 388


>gi|115350518|ref|YP_772357.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
 gi|122324103|sp|Q0BIK0|MURC_BURCM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115280506|gb|ABI86023.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
          Length = 465

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 121/309 (39%), Gaps = 47/309 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +       +  + +V        L   RL     +  +A+ GT GK
Sbjct: 64  GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELM--RL-----KQGIAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+   
Sbjct: 117 TTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLNLYP 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  V                        TN+  DH+D +    A        F + LP  
Sbjct: 174 VIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRLPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-D 299
             A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG+  
Sbjct: 211 GSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREGRAP 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGR 357
              +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   ++ GG+
Sbjct: 268 LAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQ 327

Query: 358 IYV--DYAH 364
             +  DY H
Sbjct: 328 YTLIDDYGH 336


>gi|68535826|ref|YP_250531.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium jeikeium
           K411]
 gi|109892701|sp|Q4JW94|MURC_CORJK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68263425|emb|CAI36913.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium
           K411]
          Length = 498

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 37/211 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADD----AYSKEVMKRAHN 262
           TN+  DH+DY +T+ AY      +FE+   +  P    ++  DD    A ++E++  A  
Sbjct: 189 TNIEPDHLDYFKTESAY----REVFEKFAHRIVPGGFLVVCLDDPGSAALAEELIAGAEE 244

Query: 263 AGCRVLSV-GY---QGKFIHLK----------------KVCAIHNKQQVTISVE--GKDF 300
                 +V GY   +G   H                   V A+   ++V  + E     +
Sbjct: 245 GNPLPFTVVGYGTAEGCDAHPSVPPAAIIESTEVTAEGTVSALRLTEEVKKAAEEAAGTY 304

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V NA  A    + +G D   V+  +     V  RFE+ GT  +   +Y 
Sbjct: 305 SLRVAIPGIHMVLNAAAAVLGSVLLGADVDKVIAGIGGFDGVRRRFEYHGTR-QDVEVYD 363

Query: 361 DYAHTSNSLEMILKNIR---TITSGRIIVVF 388
           DYAH    +  +L   R       GRI+ VF
Sbjct: 364 DYAHHPTEVAAVLAAARQRVEARGGRIVAVF 394


>gi|226943454|ref|YP_002798527.1| UDP-N-acetylmuramate--L-alanine ligase [Azotobacter vinelandii DJ]
 gi|259509764|sp|C1DQA0|MURC_AZOVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226718381|gb|ACO77552.1| UDP-N-acetylmuramate--alanine ligase [Azotobacter vinelandii DJ]
          Length = 488

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 128/328 (39%), Gaps = 56/328 (17%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 75  AASADVLVVSSAVNSSNPEVMTALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 127

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L + S   +A+A     S+L  
Sbjct: 128 GKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGS-SRYLIAEADESDASFLHL 184

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFE 235
           Q +  V     +  +D +         G F+ L +  +D+      Y  A +     +  
Sbjct: 185 QPMVAVVTNIDADHMDTYE--------GDFSRLKKTFVDFLHNLPFYGLAVLCVDDPVVR 236

Query: 236 ELLPKES-PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           E+LP  + P I Y   +DA  + V  R   AG R         F  L++      +  + 
Sbjct: 237 EILPLVARPTITYGLGEDADIRAVDIR--QAGMRTY-------FTVLRQ-----ERAPLE 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351
           +SV          +PG   V NAL    +    GID   +++ L     V  RF+  G  
Sbjct: 283 MSVN---------MPGVHNVLNALATIAIACDEGIDDTAIVQGLSGFQGVGRRFQVYGEL 333

Query: 352 NSRGGRIYV--DYAHTSNSLEMILKNIR 377
              GG + +  DY H    +  +LK +R
Sbjct: 334 QIEGGGVMLVDDYGHHPREVAAVLKAVR 361


>gi|203288024|ref|YP_002223039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           recurrentis A1]
 gi|201085244|gb|ACH94818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           recurrentis A1]
          Length = 451

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 27/168 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ ++P  I+A+TGT GKS++AS + ++   S   + ++G    IS     + 
Sbjct: 102 ISLFL--MFNRNP--IIAITGTKGKSTLASLLYRVLVAS-YPNVKLGGNIGISPLNFLDE 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SPI L                 E SS  L  H +  +  +    TN+  DH +Y+ 
Sbjct: 157 LDGISPIIL-----------------ELSSWQL--HDIKSLSPMISIITNVYCDHQNYYS 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
               Y   K ++F   + + S  +I  D AY     +  HN    + S
Sbjct: 198 NFDDYIEDKAKIF---INQNSGILIVQDQAYYNYFSRFKHNLKIVLFS 242


>gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5]
 gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5]
          Length = 445

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ--DFSATIR 87
           +   S DSR I+ G +F+ + G K D H FIP A  +GA  ++      +    F   +R
Sbjct: 24  VKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGAVGVISEREVDVPPGKFLIKVR 83

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           S      +++ R+          GK    ++ V G++GK++    +  +    G
Sbjct: 84  S-----TLESLREIAKFKRENFKGK----VIGVAGSAGKTTTKELLSHLLSIKG 128


>gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
 gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
          Length = 821

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 155/367 (42%), Gaps = 40/367 (10%)

Query: 29  KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +I+ + +DSR +      +F A+   + DGH +I +   +G    VVS     ++  A +
Sbjct: 23  RIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIHELYERGVRNFVVSDL--PENGEAYV 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGL 142
            +N   L V N  + L     RL  KH E     ++ +TG++GK+ V  ++ Q+     L
Sbjct: 81  DTN--FLKVANPLRAL----QRLVAKHREQFQIPVVGITGSNGKTIVKEWLYQL-----L 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +I    T S  + ++++  P  ++L   L+  +  G+    +  S  G  +     I
Sbjct: 130 SPERI---ITRSPRSYNSQIGVPLSVWL---LNEHTELGIFEAGI--SEMGEMEALRPII 181

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRA 260
           +   G  TN+G  H +   + Q     K++LF     K+   IIY  D    S  V K  
Sbjct: 182 QPTIGVLTNIGGAHQENFTSLQDKCMEKLQLF-----KDCDVIIYNGDNELISSCVAKSL 236

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     S+    + + ++ +        +     G   ++  P   +  + N+L    
Sbjct: 237 FTAREIAWSMKDTERPLFIESISKDETGTTIKYRYLGFFKEYRIPFIDDASIENSLNCLA 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI-- 376
           + + + +   ++ E + +L  V  R E      + G + ++ ++ S+  SL++ L  +  
Sbjct: 297 VALYLMVSPEVIAERMLRLEPVAMRLEV--KEGKNGCVLINDSYNSDFASLDIALDFMAR 354

Query: 377 RTITSGR 383
           RT   GR
Sbjct: 355 RTEDKGR 361


>gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38]
 gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38]
          Length = 780

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 59/310 (19%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F AI G   D HL+I + I++G    VV      +     +      ++V+N+ K L  
Sbjct: 8   LFFAIKGQNHDAHLYIEELISKGVRYFVV------EYIPEHLYEKANFIIVENSLKALQQ 61

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A     K     + +TG++GK+ V  ++          +F + P   I    +      
Sbjct: 62  TAIGYRKKFDFPFVGITGSNGKTIVKEWL----------NFLLSPNHLIVRNPKSYNSQV 111

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSFTNLGRDHIDYHQ 221
             P      LS L  +G+    +  +   L        K+IA   G  TN+G  H +   
Sbjct: 112 GVP------LSVLGVEGIYDFGLFETGISLPNEMFQLEKIIAPKYGILTNIGAAHDEGFP 165

Query: 222 TQQAYFNAKMRLFEE----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
            ++A    K++LFE      L K     +   +   K     +      +++   +    
Sbjct: 166 NREAKIKEKIKLFENCTDIFLEKNESIEVLLSNKIQKHTWSFSDETAHLLVTQKKE---- 221

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                   +N  Q+T       F  + P      + NA+      + +  D + + + + 
Sbjct: 222 --------NNTTQLTFKNSTTSFSVIVPFSDANSIENAITCVNFMLFLNEDISFIQKRVG 273

Query: 338 KLHVVPGRFE 347
           +L+ V  R +
Sbjct: 274 ELYPVELRLQ 283


>gi|291561835|emb|CBL40635.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SS3/4]
          Length = 460

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 116/314 (36%), Gaps = 33/314 (10%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138
           ++A +  + P       +    L  + L G   K+ E  +AV+GT GK++  S + +I  
Sbjct: 75  YTAAVHPDNPEYAAAAAKNLPILSRAELLGQLMKNYEKSIAVSGTHGKTTTTSMLTEILM 134

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
               +   I     + S   + R+  P  +++ +A  Y +S      ++E          
Sbjct: 135 DEKKNP-TISVGGMLDSIGGNIRVGGPE-LFVTEACEYTNSFLSFFPNMEI--------- 183

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                       N+  DH+D+ +  +       R F ELLP     II +D    KE+  
Sbjct: 184 ----------ILNIEADHLDFFKDIED-IRHSFRKFAELLPANGVLIINSDIRDYKEICD 232

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFL-FPLPGEFQVYN 314
                  +V++VG      H        N+      T+  +GK  D +   +PG   VYN
Sbjct: 233 ---GLPIKVITVGSDPAKSHYSAADVTFNENACATYTLLEDGKAIDTITLGVPGIHNVYN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L +      +GI    +   L +      RFE  G    G  +  DYAH    +   L 
Sbjct: 290 SLASIAAAHELGIRGEGIRNGLLRFTGTHRRFEKKGMIG-GVTVIDDYAHHPQEIAATLA 348

Query: 375 NIRTITSGRIIVVF 388
             +      I  VF
Sbjct: 349 AAKNYPHREIWCVF 362


>gi|229521231|ref|ZP_04410651.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
 gi|229341763|gb|EEO06765.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
          Length = 506

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 201

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F NL +  ID+      Y  A + 
Sbjct: 202 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHNLPFYGQAILC 253

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   ++DDA  +    R +         G QG+F  ++K  A 
Sbjct: 254 IDDPVIRELIPRVSRQVITYGFSDDADVRIENYRQN---------GQQGQFTVVRKGKA- 303

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        + D    +PG     NA  A  +     I    +L  +        R
Sbjct: 304 -------------NLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRR 350

Query: 346 FEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G  + +   DY H    +++ +K  R      R++++F
Sbjct: 351 FDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 397


>gi|194290812|ref|YP_002006719.1| udp-N-acetylmuramate--l-alanine ligase [Cupriavidus taiwanensis LMG
           19424]
 gi|229486486|sp|B3R6V8|MURC_CUPTR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|193224647|emb|CAQ70658.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Cupriavidus taiwanensis LMG 19424]
          Length = 474

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 112/291 (38%), Gaps = 39/291 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A S  +       +  I VV        L   RL     +  +A+ GT GK
Sbjct: 64  GANAVVVSTAVSGDNPEVLAARSQRIPVVPRAVMLAELM--RL-----KQGVAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  +    GL  +F IG    ++S   + RL T   I                 
Sbjct: 117 TTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIV---------------- 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              A +   D   L+   +I    TN+  DH+D +    A        F + LP    A+
Sbjct: 159 ---AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI--SVEG---KD 299
           +  DD   +E++         V+  G+ +   I      A+  +   T+   + G     
Sbjct: 215 LCVDDPNVREILPFVSKP---VVRYGFAEDAQIRAVDARAVDGQMHFTVLRQLNGHTEPP 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + +  LPG   V NAL A  +   + +  A +++ L + H V  RF+  G
Sbjct: 272 LEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYG 322


>gi|33861920|ref|NP_893481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|60390532|sp|Q7V0A5|MURD_PROMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33640288|emb|CAE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 40/242 (16%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + +TGT+GK++V   +  I + + L           + FA +  + TP    L +   
Sbjct: 121 NWIGITGTNGKTTVTHLLSHILRENNL----------FAPFAGN--IGTP----LCEIAY 164

Query: 176 YLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              S+ +  +  E SS  ++   H    IK   G +T    DH+D H+T   YF  K  L
Sbjct: 165 STKSKNIDWIVAELSSFQIEIATH---CIKPKIGIWTTFTPDHLDRHKTLDNYFKIKNSL 221

Query: 234 FEELLPKESPAIIYA-DDAYSKEVMKRAHN-----AGCRVLSVGYQGKFIHLKKVCAIHN 287
                 K+S   IY  DD Y KE  K   N         V    +   +I+ +    I  
Sbjct: 222 L-----KQSEFRIYNYDDQYLKENFKSLLNGIWITTNPNVSDSDHCDYWINNENF--IVE 274

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +++  +S++       F L G     N L+A      IG+ +  +   L     +P R E
Sbjct: 275 RREKLLSLKN------FKLKGNHNTQNLLLAVAAARKIGLSTERIKNALLSYEQLPHRME 328

Query: 348 FV 349
            +
Sbjct: 329 TI 330


>gi|94312058|ref|YP_585268.1| UDP-N-acetylmuramate--L-alanine ligase [Cupriavidus metallidurans
           CH34]
 gi|166224718|sp|Q1LIM7|MURC_RALME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93355910|gb|ABF09999.1| UDP-N-acetylmuramate:L-alanine ligase [Cupriavidus metallidurans
           CH34]
          Length = 471

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 114/295 (38%), Gaps = 47/295 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A +  +          I VV        L   RL     +  +A+ GT GK
Sbjct: 64  GANAVVVSTAVTNDNPEVLAARARRIPVVPRAVMLAELM--RL-----KQGVAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S V  +    GL  +F IG    ++S   + RL T   I +A+A     S+L+   
Sbjct: 117 TTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFI-VAEADESDASFLNLFP 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  V                        TN+  DH+D +    A        F + LP  
Sbjct: 174 VMEV-----------------------ITNIDADHMDTYGHDFARLKQAFVEFTQRLPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI--SVEG- 297
             A++  DD   +E++         V+  G+ +   I      A+  +   T+   + G 
Sbjct: 211 GIAVLCVDDPNVREILPFVSKP---VVRYGFAEDAQIRAVNARAVDGQMHFTVLRQLNGH 267

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                D +  LPG   V NAL A  +   + +  A +++ L + H V  RF+  G
Sbjct: 268 AEPPLDIVLNLPGIHNVQNALAAIAIATELEVPDASIVKALREFHGVGRRFQRYG 322


>gi|254455302|ref|ZP_05068731.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082304|gb|EDZ59730.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 464

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+ R+H+DY+++     N+    F + +P    + I  DD  ++ ++K+  N       
Sbjct: 182 TNIDREHMDYYRSMNE-LNSYFLNFVKKVPSFGKSFICLDDKNNRHLIKKIENKNFYSYG 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNALVAAGLCI 323
           +  +  F  +K +    +  Q  + +   +        F  PL G   + N++ A  + +
Sbjct: 241 LDQKSNFC-IKNIKQHKDYSQFDLKIRLPNKKNQMIKKFRIPLLGNHNIKNSVAAIAVSL 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +G+    + + L+    V  RF  + T ++    + DYAH    +  +L  I+ +
Sbjct: 300 TVGLSVLNIKKGLKNFKGVQRRFNKIFTLNKVD-FFDDYAHHPTEIMEVLDGIKNV 354


>gi|325518027|gb|EGC97835.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. TJI49]
          Length = 465

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 125/312 (40%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    ++   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARAKRVPIVQRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++        R  LS   Q   +  + V A   +   T+  E 
Sbjct: 208 PFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAENVDARDGRMHFTVIRER 264

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR 354
           +     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   ++ 
Sbjct: 265 RAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSAD 324

Query: 355 GGRIYV--DYAH 364
           GG   +  DY H
Sbjct: 325 GGHYTLIDDYGH 336


>gi|291534965|emb|CBL08077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis M50/1]
          Length = 401

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 91/248 (36%), Gaps = 56/248 (22%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++ +TGT GKS+ ++ +  +     L +    P   + +  Q      P   Y  +  
Sbjct: 87  DQVIGITGTKGKSTTSAMLYTV-----LKACSSRPVLLLGNIGQ------PCLDYFEEVT 135

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                   T +  E S H L    +     I   F NL  +H+DY+ T + YF AK  + 
Sbjct: 136 E------DTIIVYEMSCHQLAHTNVSPHIAI---FLNLYEEHLDYYGTVEKYFEAKSHI- 185

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTI 293
                           AY K                   G +  + + V  I  K Q T+
Sbjct: 186 ---------------AAYQK------------------SGDYFFVGENVPQIDTKAQRTV 212

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + K   +   L GE   Y+A     +   +G +   VL+ +     +P R ++VGT  
Sbjct: 213 LHQPKGVHYELKLAGEHNQYDAQFVERVAELLGCEKEAVLKSMADFEGLPHRLQYVGT-Y 271

Query: 354 RGGRIYVD 361
           RG R Y D
Sbjct: 272 RGVRYYDD 279


>gi|296284500|ref|ZP_06862498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 107/272 (39%), Gaps = 71/272 (26%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA       P  ++ +TGT+GKS+  +    I + +G+ +  +G    +    Q+  
Sbjct: 96  IELFAQAREHLPPHKVVGITGTNGKSTTTALTHHILKTAGVPT-TMGGNIGLPILGQE-- 152

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYH 220
              P P            +G  +V +E SS+ +D    LD    +     N+  DH+D +
Sbjct: 153 ---PLP------------EGGVYV-LELSSYQIDLTFSLDCDVAV---ILNITPDHLDRY 193

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           ++ +AY  AK+RL  +L     P +I                 G  VL +   G+ +  +
Sbjct: 194 ESFEAYAEAKLRL-SDLQSAGRPTVI-----------------GDEVLGLWNPGRNVAPE 235

Query: 281 K--VCAIHNKQQVTISVEGKDFDFLFPLPGE---------FQVYNALVAAGLCIAIGIDS 329
              VC                 D  +PLPG+             N   A  L   +GI+ 
Sbjct: 236 DLWVC-----------------DREYPLPGQSNWPTLQGPHNSENVDAAGCLASQLGIED 278

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           A++ + L     +P R E VG   R G +YV+
Sbjct: 279 AVIDQALRTFPGLPHRMERVG--ERAGVLYVN 308


>gi|187735166|ref|YP_001877278.1| UDP-N-acetylmuramate/alanine ligase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425218|gb|ACD04497.1| UDP-N-acetylmuramate/alanine ligase [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 765

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V N+L A  L   +G+D   V   L        RFE    +S   RI  DY H 
Sbjct: 280 IPGRHNVLNSLAAIALATELGVDFPAVTRGLASFAGAKRRFETKYLSS-SIRIVDDYGHH 338

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +   L+  R++   R++V F      R Q      GK+ L  AD+  V D  P SE 
Sbjct: 339 PTEIAATLQTARSLQPNRLVVYFQPHRYTRTQLLADDFGKV-LQEADLVFVADVYPASEL 397

Query: 425 P 425
           P
Sbjct: 398 P 398


>gi|15642397|ref|NP_232030.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|153803321|ref|ZP_01957907.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|153822230|ref|ZP_01974897.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227082523|ref|YP_002811074.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229512266|ref|ZP_04401745.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229519402|ref|ZP_04408845.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229528613|ref|ZP_04418003.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229607044|ref|YP_002877692.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae MJ-1236]
 gi|254849522|ref|ZP_05238872.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297581027|ref|ZP_06942952.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|298500240|ref|ZP_07010045.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
 gi|9656973|gb|AAF95543.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|124121139|gb|EAY39882.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|126520240|gb|EAZ77463.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227010411|gb|ACP06623.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229332387|gb|EEN97873.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229344091|gb|EEO09066.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229352231|gb|EEO17172.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229369699|gb|ACQ60122.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MJ-1236]
 gi|254845227|gb|EET23641.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297534853|gb|EFH73689.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|297540933|gb|EFH76987.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
          Length = 506

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 201

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F NL +  ID+             
Sbjct: 202 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------- 243

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q 
Sbjct: 244 -----LPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQF 295

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G
Sbjct: 296 TVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLG 355

Query: 351 TNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               G  + +   DY H    +++ +K  R      R++++F
Sbjct: 356 EFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 397


>gi|292558099|gb|ADE31100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus suis GZ1]
          Length = 83

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 9/72 (12%)

Query: 414 IVTDDNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGKG 468
           I+T D+P  EDP    E+IRA +      FI   +R EAIRTA+   +  +D +++AGKG
Sbjct: 2   ILTVDDPNREDPAAIAEQIRAHMTR-TSNFIL--DREEAIRTAMSQTSSPKDAVIIAGKG 58

Query: 469 HETVHIVTNGEK 480
            +   IV NGEK
Sbjct: 59  ADAYQIV-NGEK 69


>gi|119953370|ref|YP_945579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia turicatae
           91E135]
 gi|119862141|gb|AAX17909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia turicatae
           91E135]
          Length = 451

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 27/151 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ ++P  I+A+TGT GKS++AS + ++      +S ++G    +S  +  + 
Sbjct: 102 ISLFL--MFNQNP--IIAITGTKGKSTLASLLHKVLVIKYPNS-KLGGNIGVSPLSFLDE 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SPI L                 E SS  L  H L  +  I    TN+  DH +Y+ 
Sbjct: 157 LDGVSPIIL-----------------ELSSWQL--HDLRNLCPIISIITNIYSDHQNYYS 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              +Y   K R+F   + + S  +I  D AY
Sbjct: 198 NFDSYIEDKSRIF---INQNSGILISQDQAY 225


>gi|153826877|ref|ZP_01979544.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229524386|ref|ZP_04413791.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
 gi|149739293|gb|EDM53549.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229337967|gb|EEO02984.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
          Length = 506

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 201

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F NL +  ID+      Y  A + 
Sbjct: 202 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHNLPFYGQAILC 253

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   ++DDA  +    R +         G QG+F  ++K  A 
Sbjct: 254 IDDPVIRELIPRVSRQVITYGFSDDADVRIENYRQN---------GQQGQFTVVRKGKA- 303

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        + D    +PG     NA  A  +     I    +L  +        R
Sbjct: 304 -------------NLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRR 350

Query: 346 FEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G  + +   DY H    +++ +K  R      R++++F
Sbjct: 351 FDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 397


>gi|152998950|ref|YP_001364631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS185]
 gi|151363568|gb|ABS06568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS185]
          Length = 439

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 28/149 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++             A    
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMAREAGIA------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +  P       AL  L       V +E SS  L+      +K +  +  N+  DH+D + 
Sbjct: 144 IGVP-------ALDLLHENADLFV-LELSSFQLETTH--SLKCVVATCLNISEDHMDRYS 193

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADD 250
              AY  AK+RL+     K+S A+++  D
Sbjct: 194 DIAAYREAKLRLY-----KQSRAVLFNRD 217


>gi|325067281|ref|ZP_08125954.1| UDP-N-acetylmuramate/alanine ligase [Actinomyces oris K20]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + +  +PG+    +A  A    I +G++ AL+ + L        RFE  G  + G R+  
Sbjct: 72  ELVLAVPGDHVALDAAGAWAAGIELGVEPALMAQALGAFGGTGRRFEDRG-EADGVRVID 130

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVT 416
           DYAH    +E +L+  R +     GR++V+F      R +      G+ AL LAD  ++T
Sbjct: 131 DYAHHPTEIEALLRTARGVAQERGGRVLVLFQPHLFSRTRAFADRFGQ-ALALADAVVIT 189

Query: 417 DDNPRSED----PEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
           D  P  E     P+     +   +PG   +    R+EA     ++    D+L+
Sbjct: 190 DVYPARETQADFPDITGDTVAQRVPGGTARFVAERLEAAHAVADLARPGDLLL 242


>gi|308048066|ref|YP_003911632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
 gi|307630256|gb|ADN74558.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 22/120 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V  + Q  G+S   +G    I + A D                 
Sbjct: 109 VVAITGSNGKSTVTTLVGHLAQACGVS---VGVGGNIGTPALD----------------- 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  QG     +E SS  L+  R   +    G+  N+  DH+D + + +AY +AK+ L+ +
Sbjct: 149 LLGQGHQLYVLELSSFQLETTR--SLPAQVGTVLNVSPDHLDRYDSYEAYRDAKLALYPQ 206


>gi|271964372|ref|YP_003338568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
 gi|270507547|gb|ACZ85825.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
          Length = 465

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL        LA+TGT+GK++V   +  +   +G ++  +G   T    A    +T 
Sbjct: 93  LAWRLRPAGAAPWLALTGTNGKTTVVRMLTSMLTAAGHAALAVGNVGTPVVEA----VTG 148

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P+ +                ++VE SS  L  HR   +     +  N+  DH+D+H + +
Sbjct: 149 PADV----------------LAVELSSFQL--HRSPSLAPHTAAVLNVAPDHLDWHGSLE 190

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            Y   K  +F     +    +  ADD +S   +   ++ G    SVG+
Sbjct: 191 EYARVKGEIFT----RAGTVVHNADDEWSAR-LAAPYDGGTGARSVGF 233


>gi|254470506|ref|ZP_05083910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudovibrio sp.
           JE062]
 gi|211960817|gb|EEA96013.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudovibrio sp.
           JE062]
          Length = 466

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 41/204 (20%)

Query: 102 LSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG-----PTSTISS 155
           + LF +      PE   +A+TGT+GKS+  + +  + +  G+   Q+G     P   +  
Sbjct: 100 VELFVNEREAVCPEAPFVAITGTNGKSTTTALISHVLKECGM-DVQMGGNIGRPVLDLEG 158

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F++D        +Y+                VE SS+ +D      +    G   NL  D
Sbjct: 159 FSEDR-------VYV----------------VEVSSYQID--LAPSLAPDIGVMMNLSPD 193

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-- 273
           H+D H   + Y + K RL +        A++  DD +S  + +R   +G  +  +     
Sbjct: 194 HLDRHGNMENYASIKERLVK----AARLAVVGVDDEFSAAIAQRRAESGEPIELISCHEP 249

Query: 274 ---GKFIHLKKVCAIHNKQQVTIS 294
              G +    KV  + +++QV ++
Sbjct: 250 VEFGVYAADGKVIEVFDEEQVVVA 273


>gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 438

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 35/250 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++  S DSR  + G +FV IV  + DGH FIP A+  GA          L D +   
Sbjct: 20  DATVDSASIDSRSARPGQLFVPIVAAR-DGHDFIPSAVQAGAP-------VYLTDRAPDP 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 + V +T + L+     +    P +++ VTG+ GK+S    +  +      ++F+
Sbjct: 72  ALGATAVQVADTAEALADLGRFVRAGLPGSVVGVTGSVGKTSTKDLLAGVLG----TTFR 127

Query: 147 IGPTSTISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
              +    SF  +N L  P     +P      +  + ++GV H++   S           
Sbjct: 128 TAASE--KSF--NNELGLPLTLLGAPDDTEAVVLEMGARGVGHIAQLCSIA--------- 174

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                G  T +   H++   +      AK  L E  LP +  A++ AD      +  R  
Sbjct: 175 -SPTVGVLTRVEAVHLEMFGSLDDVAQAKGELVEA-LPADGLAVLNADHPVVAAMTSRTS 232

Query: 262 NAGCRVLSVG 271
               RVL+ G
Sbjct: 233 ---ARVLTYG 239


>gi|254419673|ref|ZP_05033397.1| Mur ligase middle domain family [Brevundimonas sp. BAL3]
 gi|196185850|gb|EDX80826.1| Mur ligase middle domain family [Brevundimonas sp. BAL3]
          Length = 468

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 126/327 (38%), Gaps = 35/327 (10%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + + A+ +V + A  ++D    I +   +  V  TR  L    S+L+   P ++  V GT
Sbjct: 65  VTRSAQTVVATGA--IEDTVPDIGAARRVGAVIKTRPQL---LSQLFNAAPTSV-GVAGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGKS++   +  I     LS     PT  ++     N      P   A AL       V 
Sbjct: 119 SGKSTITGMIAWI-----LSQTDRNPT-VVNGAVMKNFADADHP--FASALVGGPDLFVA 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V     S       + G        +N+  DH    + +         LF     + + 
Sbjct: 171 EVDESDGS-------IAGYDPTVAVVSNISLDHKSMEELRD--------LFGGFTARATT 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  D+  +  +++          ++G +   +    +       +  +     ++D +
Sbjct: 216 AVLNLDNPETAALVQTLPAGKAITFALGEEKADLSAYDLQPTPTGMKFRLMEGWSEYDVV 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--D 361
             +PG   V NAL A G   A+ + +   ++ LE    +  R E VGT +    I V  D
Sbjct: 276 LNVPGAHNVANALAALGAVKALDVPTGQAVKALETFAGIRRRMEVVGTVN---DITVIDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVF 388
           +AH  + +   LK +     GR++++F
Sbjct: 333 FAHNPDKIAATLKTLHAF-DGRLLILF 358


>gi|311104877|ref|YP_003977730.1| cyanophycin synthetase 1 [Achromobacter xylosoxidans A8]
 gi|310759566|gb|ADP15015.1| cyanophycin synthetase 1 [Achromobacter xylosoxidans A8]
          Length = 857

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 65/326 (19%), Positives = 120/326 (36%), Gaps = 58/326 (17%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +++A    G+ P  ++AV GT+GK++       I    G +  ++G T++   +  + R+
Sbjct: 460 NMYADGDDGRIP--VVAVAGTNGKTTTVRLTAHIL---GAAGNRVGMTNSDGVYVDNLRI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDY-- 219
            T        A S L    V     E +  G+ +  L   +      TN+G  DH+    
Sbjct: 515 DTGDCSGPRSARSVLMHPDVDAAVFETARGGILREGLAFDRCNVAIVTNIGMGDHLGLGY 574

Query: 220 ------------------HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                             H +  A  NA   +  E+      +I Y  +  +  V+    
Sbjct: 575 ISTVEDLAVVKRVIVQHVHPSGTAVLNAADPIVAEMAASCPGSITYFAEDRNHPVLATHR 634

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG---------EFQV 312
             G R                C   +   +  + +G + +  +PL            FQV
Sbjct: 635 AQGLR----------------CVYRDGDAIVTAQQGAE-ETRYPLAAIPLTRNGTITFQV 677

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            NA+ +     A+G+D+ ++   L          PGRF     + RG  +  DY H  ++
Sbjct: 678 ENAMASIAAAWALGLDTDIIRRGLATFVNDAQTAPGRFNVF--DYRGATVIADYGHNPDA 735

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDR 394
           +  +++ +  + + R  VV    GDR
Sbjct: 736 ILALVRAVDAMPAKRRSVVISGAGDR 761


>gi|227014294|gb|ACP10504.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 506

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 201

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F NL +  ID+             
Sbjct: 202 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------- 243

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q 
Sbjct: 244 -----LPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQF 295

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G
Sbjct: 296 TVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLG 355

Query: 351 TNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               G  + +   DY H    +++ +K  R      R++++F
Sbjct: 356 EFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 397


>gi|224536612|ref|ZP_03677151.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521703|gb|EEF90808.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 30/267 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +GL+   +G    I                 + AL  
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGK---------------SLALQV 145

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
            + Q   +V +E SS  LD   +   +       N+  DH+D Y+   Q Y +AK R+ +
Sbjct: 146 ATDQHDYYV-IELSSFQLDN--MYKFRANIAVLMNITPDHLDRYNHCMQNYVDAKFRITQ 202

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              P E   I + DD    +E+ K    A     S   +   I   +   +   + +  +
Sbjct: 203 NQTP-EDAFIFWNDDPIIKRELDKHGLCAHLYPFSAMKEDGAIAYVEDGEVEINEPIAFN 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E +       L G   +YN+L A       GI+   +   L     V  R E V T  R
Sbjct: 262 MEQEK----LALQGTHNLYNSLAAGISANLAGIEKEYIRRALSDFKGVEHRLEKVAT-VR 316

Query: 355 GGRIYVDYAHTS-NSLEMILKNIRTIT 380
           G     D   T+ NS    L++++T T
Sbjct: 317 GVEFINDSKATNVNSCWYALQSMKTKT 343


>gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
 gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
          Length = 815

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 140/333 (42%), Gaps = 44/333 (13%)

Query: 30  INEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I  ++ DSR I +     F+AI  +K  G  FI  A+ +G + I+    Y   +F     
Sbjct: 24  IKNIAYDSRIIYSIKNTAFIAINTHKNSGEKFIESAMDRGIKVIISEHHYP--EFE---- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N   ++V+N+  FL   A   +       + +TG++GK+ +  ++ Q C  +   + + 
Sbjct: 78  -NITWIIVENSVAFLQKLAKYHFENSHLQSIGITGSNGKTILKEWLYQ-CLWNEFPTVK- 134

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-- 205
            P S  S            P+ L + ++     G+  V +         H ++ ++ I  
Sbjct: 135 SPKSFNSQIGL--------PLSLLQ-INDSHQLGIFEVGISKP------HEMEKLENIFH 179

Query: 206 --AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHN 262
              G  T++G  H     +++   + K+RLF     K S  IIY  D+    + +K ++ 
Sbjct: 180 PQIGLLTHIGTAHAANFSSEEELIDEKIRLF-----KNSEVIIYNGDNDLVDQKIKNSY- 233

Query: 263 AGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +  ++++ G++ +   FI       I   + + +   G++  F      E  + NA+   
Sbjct: 234 SDKKLIAYGFKKENQVFIK----SNISKDENIIVEYFGEEISFPAHQRDEATLTNAMALI 289

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +   + I++  ++E +  L  V  R E +  N
Sbjct: 290 TVLKELNIENKKIVEKINLLKAVEMRLEAIEGN 322


>gi|154509041|ref|ZP_02044683.1| hypothetical protein ACTODO_01558 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798675|gb|EDN81095.1| hypothetical protein ACTODO_01558 [Actinomyces odontolyticus ATCC
           17982]
          Length = 463

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 10/186 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D + +++ +    +     ++P     +  A+D  +  + + A   G RV++
Sbjct: 181 TNVEPDHLDRYHSREEFEGIFVEFARRMVPG-GLLVTCAEDEGAVRLAQSARAEGLRVVT 239

Query: 270 VGYQGKFIHLKKVCAIHNKQQV-----TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G + + +    V     + +      +++           +PGE  V NA  A    I 
Sbjct: 240 YGRRERSLCTPDVVIADVRVEAHGAGASLTWGELSASLALSVPGEHNVLNAAAAWVAGIE 299

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSNSLEMILKNIRTITS-G 382
            G+    + + L +      RFE  G   SR  R++ DYAH    +E  ++    +   G
Sbjct: 300 CGLSPQAIADGLGEFTGAARRFEARGQVGSR--RLFDDYAHHPTEVEAAIREAHVVAGEG 357

Query: 383 RIIVVF 388
            + VVF
Sbjct: 358 DVTVVF 363


>gi|19704790|ref|NP_604352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19715127|gb|AAL95651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 454

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 28/156 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 115 IIAITGTNGKSTTTAKISDMLNHAGYKATYAGN--------------------IGRSLSE 154

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ +++   Y+N K    
Sbjct: 155 VLLKEKDLDFISLELSSFQLEN--IENFKPCISMIINIGPDHIERYKSFDEYYNTKFN-- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
             +   ++  + + ++   +E+ KRA     + +SV
Sbjct: 211 --ITKNQTEDLYFIENIDDEEIEKRAKQIKAKRISV 244


>gi|325288828|ref|YP_004265009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964229|gb|ADY55008.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 454

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 105/251 (41%), Gaps = 26/251 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  + + ++ +++G  +   G   T                 ++  +  
Sbjct: 109 VVGITGSNGKTTTTTLIGELAKKTGRPAVVAGNIGT----------------AISGKVEG 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L S+G+  V  E SS  L+   +D +++      N+  DH+D H T + Y  AK R+FE 
Sbjct: 153 LGSRGI--VVAELSSFQLEL--IDRLRVNIAVLINITPDHLDRHGTLENYAAAKARIFEN 208

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K+  A++  D    +E  K        + +       I L     + ++   T  + 
Sbjct: 209 QTGKDL-AVLSWDYPMVREYGKITQARVTYISTEELLADGIGLSGNDLVWSRDGKTTKII 267

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            ++      L G+  + N +    + + +G+    + E L     V  R E VG  S  G
Sbjct: 268 ARNE---LQLRGKHNLENVMCGIAVGLEMGLSGPQIAEVLRGFAPVAHRQEVVG--SYDG 322

Query: 357 RIYVDYAHTSN 367
            +Y++ +  +N
Sbjct: 323 ILYINDSKGTN 333


>gi|197334581|ref|YP_002156996.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
 gi|226706333|sp|B5FB34|MURC_VIBFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197316071|gb|ACH65518.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
          Length = 487

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  +   QI   +GL  +F  G    + +   + RL + S   +A+A   
Sbjct: 125 IAVAGTHGKTTTTALTTQIYSEAGLDPTFVNG--GLVKNAGTNARLGS-SRFLIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A M 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAVMC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  ELLP+ S  +I   ++DDA  + +  R          VG Q  F   +K    
Sbjct: 234 VDDPVVRELLPQVSRQVITYGFSDDADVRLINYR---------QVGQQSFFTVQRK---- 280

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                     +  D D +  +PG+    NA  A  +     ++   +L  L        R
Sbjct: 281 ----------DRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILTALLNFEGAGRR 330

Query: 346 FEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G   T +    +  DY H    +++ +K  R      R++++F
Sbjct: 331 FDQLGEFETGNGSAMLVDDYGHHPTEVDVTIKAARAGWAEKRLVMIF 377


>gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 817

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 130/322 (40%), Gaps = 39/322 (12%)

Query: 33  VSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +S DSR +Q     +F A+VG   D H++I   I++G +  VV+           +    
Sbjct: 31  ISIDSRSLQNNENTLFFALVGPNNDAHIYIGDLISKGVKNFVVTY------IPKRLTGKA 84

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+V NT   L +FA          I+ +TG++GK+ V  ++          +F + P 
Sbjct: 85  NFLIVKNTLVALQIFARYYRNLFHFPIIGITGSNGKTIVKEWL----------NFLLSPD 134

Query: 151 STI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             I  S  + ++++  P  +    A++   + G+    +       +  ++  I+   G 
Sbjct: 135 YNIIRSPKSYNSQVGVPLSVI---AINENHNLGIFEAGISTKDEMENLQKI--IQPTIGI 189

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLF---EELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            TN+G  H +           K++LF   E L+  ++  I   +   +KE+     +   
Sbjct: 190 LTNIGTAHDEGFADISEKIKEKLKLFTAVEVLILNKNKTI---ETFINKEINTFTWSTND 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +   V +Q K         +++   + I+ +GK F    P   E  + N++    + + +
Sbjct: 247 QSADVFFQKK--------TLNDHALLNITNQGKYFKIKIPFIDEASLENSMHCILVMLYL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFE 347
             D   +   + +L  V  R +
Sbjct: 299 KYDLDTIKHRISQLFPVEMRLK 320


>gi|110680531|ref|YP_683538.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter denitrificans
           OCh 114]
 gi|123361696|sp|Q163J1|MURC_ROSDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109456647|gb|ABG32852.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter denitrificans OCh
           114]
          Length = 468

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+ + ++   L     V  RF  VG    G  I  DY 
Sbjct: 280 LPMPGDHNVSNALSAIAVARHLGMKAEVIKTALAAFGGVNRRFTRVGEID-GVTIIDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R  T GR+I V
Sbjct: 339 HHPVEIAAVLKAARQATEGRVIAV 362


>gi|59712807|ref|YP_205583.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio fischeri ES114]
 gi|75353396|sp|Q5E2Q1|MURC_VIBF1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59480908|gb|AAW86695.1| UDP-N-acetylmuramate:L-alanine ligase [Vibrio fischeri ES114]
          Length = 487

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  +   QI   +GL  +F  G    + +   + RL + S   +A+A   
Sbjct: 125 IAVAGTHGKTTTTALTTQIYSEAGLDPTFVNG--GLVKNAGTNARLGS-SRFLIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A M 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAVMC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  ELLP+ S  +I   ++DDA  + +  R          VG Q  F   +K    
Sbjct: 234 VDDPVVRELLPQVSRQVITYGFSDDADVRLINYR---------QVGQQSFFTVQRK---- 280

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                     +  D D +  +PG+    NA  A  +     ++   +L  L        R
Sbjct: 281 ----------DRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILTALLNFEGAGRR 330

Query: 346 FEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G   T +    +  DY H    +++ +K  R      R++++F
Sbjct: 331 FDQLGEFETGNGSAMLVDDYGHHPTEVDVTIKAARAGWAEKRLVMIF 377


>gi|84501756|ref|ZP_00999928.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
 gi|84390377|gb|EAQ02936.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
          Length = 469

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           V +  EG   D    P+PG+  V NAL A  +   +G+    +   L     V  RF  V
Sbjct: 266 VLLQAEGDRIDGCSLPMPGDHNVSNALSAVAVARHLGMKKDEIRTALANFGGVNRRFTRV 325

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           G    G  +  DY H    +  +LK  R  T GR+I V
Sbjct: 326 GEVG-GVTVIDDYGHHPVEIAAVLKAARQATEGRVIAV 362


>gi|109899819|ref|YP_663074.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas atlantica
           T6c]
 gi|122971620|sp|Q15Q18|MURC_PSEA6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109702100|gb|ABG42020.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoalteromonas atlantica
           T6c]
          Length = 484

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 131/337 (38%), Gaps = 56/337 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A  +VVSSA    +      +   I V+        L   R +G      +A+ GT G
Sbjct: 75  EKANVVVVSSAIDPTNPEVNAANEMRIPVIRRAEMLAELMRFR-HG------IAIAGTHG 127

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  I  ++ L  +F IG    ++S   + RL + S   +A+A    S     H
Sbjct: 128 KTTTTSLIATIFAQAELDPTFVIG--GLLNSAGTNARLGS-SQYLIAEADE--SDASFVH 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLP 239
                            ++ +    TN+  DH+     D+ + Q  Y +     F   LP
Sbjct: 183 -----------------LQPMVSVVTNIEPDHMETYQGDFQKMQDTYID-----FLHNLP 220

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQVTIS 294
               A++  DD    +++ R      + L+ GY      +  V A H     N+ + T+ 
Sbjct: 221 FYGLAVLCIDDPVITQLLPRIKR---KYLTYGYS----EVADVRATHVKHTFNQSEFTLK 273

Query: 295 -VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + +D   +   PG+  V NAL A  +     I+ A +   L     +  RFE +G  +
Sbjct: 274 RKDHQDIQVVVNAPGKHNVLNALAAIAVATDENIEDAAITAALANFSGIGRRFEMLGEFA 333

Query: 354 RG-GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
            G G + +  DY H    +E  +   R     R +V+
Sbjct: 334 TGEGDVLLVDDYGHHPTEVEATIAVARNNWPDRRLVM 370


>gi|312130994|ref|YP_003998334.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Leadbetterella
           byssophila DSM 17132]
 gi|311907540|gb|ADQ17981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leadbetterella
           byssophila DSM 17132]
          Length = 433

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 51/231 (22%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R+IQ   +F A+ G K +G+ F  QAI  GA       AY++ D  A+++    +
Sbjct: 16  ITTDTRNIQKDNLFFALKGEKFNGNGFAEQAIQDGA-------AYAVVD-DASLKGKERM 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-------SGLSSF 145
           +  ++  + L   A     +    ++A+TG++GK++    + ++  +        G  + 
Sbjct: 68  IYCEDVLETLQALARHHRRQFDIAVIALTGSNGKTTNKELLTRVLGQKYKVHATKGNLNN 127

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH-------VSVEASSHGLDQHR 198
            IG   T+ S   D ++              +   G  H        S+   +HG     
Sbjct: 128 HIGVPLTLLSMPDDAQVA-------------IIEMGANHQKEIALLCSIAEPTHGF---- 170

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                      TNLG+ H++    ++     K  LF+ L  K+S  I++ +
Sbjct: 171 ----------ITNLGKAHLEGFGGEEGIRKGKGELFDFL--KQSGGIVFVN 209


>gi|284030820|ref|YP_003380751.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
 gi|283810113|gb|ADB31952.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
          Length = 479

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 11/223 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266
           T++  DH+D +  + +Y  A    FE+   +  P    +I  DDA ++ +   A   G  
Sbjct: 189 TSVEPDHLDNYGDEASYTKA----FEDFCDRVLPGGFLVICVDDAGARRLAGFARERGID 244

Query: 267 VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIA 324
           V + G      + + ++ A    Q       G+    +     G+    NA  A  + + 
Sbjct: 245 VRTYGESADADLRVTEITATGAVQSFVPVWRGRKLPVVNLQQAGKHNALNASAALAVGLG 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           +G  +A + E L        RFEF G    G R+Y  YAH    L + L   R +   GR
Sbjct: 305 LGFSAADLAEGLASFTGTGRRFEFKGQED-GVRVYDSYAHHPTELAVDLTAARQVAGEGR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +I  F                 AL LAD  +V D     EDPE
Sbjct: 364 VIACFQPHLFSRTRIFATEFSAALALADEVVVMDVFAAREDPE 406


>gi|170728148|ref|YP_001762174.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
 gi|169813495|gb|ACA88079.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
          Length = 461

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 112/291 (38%), Gaps = 52/291 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK+S +S +  I +  G    F IG      +F    R T  SP ++ +A  
Sbjct: 109 VLAVSGTHGKTSTSSMLAWILEYCGYEPGFLIG--GVPQNFGVSAR-TGNSPFFVVEADE 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH---QTQQAYFNAKMR 232
           Y S+        + S     Q R     L+     NL  DH D     +  Q  FN  +R
Sbjct: 166 YDSA-----FFDKRSKFVHYQPR----TLV---INNLEFDHADIFDDLKAIQRQFNHVIR 213

Query: 233 LF----EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                 + + PKES A+         EV+K     GC       + +F            
Sbjct: 214 TVPGEGKIIWPKESQAVT--------EVIKM----GCWS-----EQEFYSSSADTGQAGW 256

Query: 289 QQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
               I+ +G  F+  F           L G+  V NA +A      +G+     +E L K
Sbjct: 257 STKLIADDGHQFELFFDGVSQGTLDWQLIGQHNVENATMAVAAARHVGVKPQAAIEALVK 316

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                 R E +GT   G  +Y D+AH   ++   L+  R  +  G+I ++ 
Sbjct: 317 FQPPKRRMELIGT-VNGIEVYDDFAHHPTAIATTLQGTRAKVGEGKITIIL 366


>gi|217971631|ref|YP_002356382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS223]
 gi|217496766|gb|ACK44959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS223]
          Length = 439

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 28/149 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++             A    
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMAREAGIA------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +  P       AL  L       V +E SS  L+      +K +  +  N+  DH+D + 
Sbjct: 144 IGVP-------ALDLLHENADLFV-LELSSFQLETTH--SLKCVVATCLNISEDHMDRYS 193

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADD 250
              AY  AK+RL+     K+S A+++  D
Sbjct: 194 DIAAYREAKLRLY-----KQSRAVLFNRD 217


>gi|160873536|ref|YP_001552852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS195]
 gi|160859058|gb|ABX47592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS195]
 gi|315265766|gb|ADT92619.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS678]
          Length = 439

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 28/149 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++             A    
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMAREAGIA------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +  P       AL  L       V +E SS  L+      +K +  +  N+  DH+D + 
Sbjct: 144 IGVP-------ALDLLHENADLFV-LELSSFQLETTH--SLKCVVATCLNISEDHMDRYS 193

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADD 250
              AY  AK+RL+     K+S A+++  D
Sbjct: 194 DIAAYREAKLRLY-----KQSRAVLFNRD 217


>gi|83589695|ref|YP_429704.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
 gi|109892711|sp|Q2RK78|MURC_MOOTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83572609|gb|ABC19161.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
          Length = 468

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 142/382 (37%), Gaps = 50/382 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A G + +V+SSA    +          + VV        LF +R         +AV G 
Sbjct: 64  LAPGVQEVVISSAVPSSNPEVVAARQRSLPVVKRGELLARLFNAR-------RGIAVAGA 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++ ++ V  + +  GL      P + I  + ++             A +    +G  
Sbjct: 117 HGKTTTSALVALVMKEGGLE-----PAAVIGGYVREF------------ASNAYPGRGDF 159

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V+    S G        I LI    TN+  DH++++ +      A     +++ P    
Sbjct: 160 LVAEADESDGSFLWLKPEIALI----TNIEADHLEHYGSLDRIVAAFKDFIDQIRPG-GK 214

Query: 244 AIIYADD--------AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           AI+ A+D           ++V+    N      + G Q     +    AI+ ++Q     
Sbjct: 215 AILCAEDPRVAGLVACSPRQVITYGLNGRPDYRATGVQ--MAGMGGRAAIYYREQYL--- 269

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     +PG   + NAL A      +GI  A++   L +   V  RFE +  +   
Sbjct: 270 ----GQLTMAVPGRHNILNALGAIAAGHQLGIPFAVMARALGQFRGVGRRFEILWDDGT- 324

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAI 414
            R+  DYAH    +   L     + + R++ VF      R        G+ A   AD+ I
Sbjct: 325 TRVVDDYAHHPTEIRATLAAASQVGAKRVVAVFQPHRYTRTHHLYREFGQ-AFRQADVVI 383

Query: 415 VTDDNPRSEDP-EKIRAEIIHG 435
           V D  P  E P   + +++I G
Sbjct: 384 VNDIYPAGEAPLPGVNSQLITG 405


>gi|170718781|ref|YP_001783964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 2336]
 gi|168826910|gb|ACA32281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           2336]
          Length = 436

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 112/287 (39%), Gaps = 55/287 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV+S   S++           + VV +   F        Y   P  I+A+TG++GKS
Sbjct: 67  ADLIVISPGLSVKTLEIQTALQAGVEVVGDIELFCR------YANKP--IIAITGSNGKS 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +  GL   ++G    I                   AL  L      +V +
Sbjct: 119 TVTTLVSEMAKEDGL---KVGIGGNIG----------------IPALELLQQDYDLYV-L 158

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++E        A+I 
Sbjct: 159 ELSSFQLETTY--SLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENC----QRAVIN 212

Query: 248 ADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP- 305
           A+D   + E +K         ++ G       LK      N +Q  ++ E      + P 
Sbjct: 213 AEDVLTTTEDLKSP-------ITFGESQADYWLK----TENGKQYLMAKE----RLILPC 257

Query: 306 ----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               L G     NAL A+ L  A+ I    +   L K   +  RF+ 
Sbjct: 258 DEMKLVGRHNYMNALAASALVQAVDISFTAIRTALRKFTGLAHRFQL 304


>gi|226358157|ref|YP_002787896.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319800|gb|ACO47794.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 917

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 131/335 (39%), Gaps = 40/335 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GKS+ +  V  I Q+SG     +G T++   +    ++ +        A   
Sbjct: 505 IISITGTNGKSTTSRMVAHILQQSGKV---VGLTTSNGIYIGGEQVVSGDTTGPKSAKVV 561

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235
           LS   V    +E +  G+ +  L       G+  N+  DH+     +     A ++ L  
Sbjct: 562 LSDPSVEVAVLETARGGILREGLGFATCDVGAVLNIQPDHLGLKGIETIEDLAWVKSLIV 621

Query: 236 ELLPKESPAIIYADD-----------------------AYSKEVMKRAHNAGCRVLSVGY 272
           E++ +   +++ ADD                       AYS E+ +     G  ++    
Sbjct: 622 EVVSRNGASVLNADDPLTLKMRRKARGEIILFSMCGGGAYSAELKEHIGGGGTAIVR--- 678

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +   L     ++   +    +  +D         +  V NAL AA + +A  +   ++
Sbjct: 679 --EPTVLGDELVLYQDDRRQPIMRARDIPATLGGFAQVNVQNALAAAAIAVAQQVPLQMI 736

Query: 333 LEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIV 386
              L        + PGR      +    R+ +DYAH    +E + + I  +    GR+I 
Sbjct: 737 RSALSSFSTSFELSPGRLNLY--DGHPFRVLLDYAHNPTGMEHLRELIGHLRPPKGRVIG 794

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           V G  GDR       MG++A    D+ IV +D  R
Sbjct: 795 VMGVAGDRRDEDIVRMGELAAQAFDVLIVREDELR 829


>gi|84489390|ref|YP_447622.1| UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera stadtmanae
           DSM 3091]
 gi|84372709|gb|ABC56979.1| predicted UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 447

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           H+KK     NKQ++T+       +  FP  G +  YN      LC  + I   ++ + + 
Sbjct: 245 HIKK----ENKQEITLKTYDNIINITFPYIGTYNTYNVCGVYALCDTLNIKPQIIEKQMA 300

Query: 338 KLHVVPGRFEFVGTNSRGGRI 358
             H   GR E +  N++  +I
Sbjct: 301 NFHFSLGRMEDMTYNNKTIKI 321


>gi|229514029|ref|ZP_04403491.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
 gi|229349210|gb|EEO14167.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
          Length = 506

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 201

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F NL +  ID+             
Sbjct: 202 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------- 243

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q 
Sbjct: 244 -----LPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQF 295

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G
Sbjct: 296 TVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLG 355

Query: 351 TNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               G  + +   DY H    +++ +K  R      R++++F
Sbjct: 356 EFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 397


>gi|261401200|ref|ZP_05987325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208881|gb|EEZ75336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
          Length = 452

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   +A GA A+VV
Sbjct: 8   FICQALKLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVV 67

Query: 74  S--SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           S     SL+D           L VD+T   L   A          +  +TG+ GK++V  
Sbjct: 68  SREDCASLKD----------ALKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKE 117

Query: 132 FVQQICQR 139
            +  + +R
Sbjct: 118 MLAAVLRR 125


>gi|254246418|ref|ZP_04939739.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
 gi|124871194|gb|EAY62910.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
          Length = 465

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 123/312 (39%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA A+VVS+A      +  A  R   PI+     R  +     RL     +  +A+ GT
Sbjct: 63  EGANAVVVSTAVRSDNPEVLAARRQGVPIV----QRAVMLAELMRL-----KQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG
Sbjct: 208 PFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREG 264

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR 354
           +     +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   ++ 
Sbjct: 265 RAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSAD 324

Query: 355 GGRIYV--DYAH 364
           GG+  +  DY H
Sbjct: 325 GGQYTLIDDYGH 336


>gi|260593466|ref|ZP_05858924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
 gi|260534582|gb|EEX17199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
          Length = 440

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 73/371 (19%), Positives = 150/371 (40%), Gaps = 42/371 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G IF+A+ G   DG+ F   A+ +G   AIV    Y+         ++  
Sbjct: 16  VTTDSRYCPEGSIFIALKGALFDGNKFAKAALDKGCSYAIVDEKEYADP-------TDKR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I++V++        A     +    ++ +TGT+GK++    +  +        +++  T 
Sbjct: 69  IILVEDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISTVLAE----KYKVHHTE 124

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L   S   +  + + AS  G  +  +  ++   G  TN
Sbjct: 125 A----NYNNDVGVPRTL-----LGIGSDDEIAVIEMGASHPGDIKKLVTYVEPTCGLITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H+    + +     K  L++ L  K   A+++ +++ +      A     R+++ G
Sbjct: 176 VGRAHLQGFGSFEGVKRTKGELYDYL--KAHDALLFLNESNADLTEMAAQREFDRIITYG 233

Query: 272 ------YQGK------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  QGK      F+  +   +  NKQQ   ++    ++    L G + + N L A 
Sbjct: 234 QDDTADVQGKVISCAPFLKFEWQSSSLNKQQPANTI----YEVQTHLIGSYNLDNMLAAI 289

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            + +  G+    +   LE    +P       T +   ++ VD Y    +S+   ++N R 
Sbjct: 290 TIGLHFGVTPQQINHALESY--IPHNNRSQLTETAHNKLIVDAYNANPSSMAAAIENFRL 347

Query: 379 ITSGRIIVVFG 389
           +     + + G
Sbjct: 348 MEVEHKMAILG 358


>gi|221632098|ref|YP_002521319.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
 gi|221155634|gb|ACM04761.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
          Length = 462

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 144/397 (36%), Gaps = 58/397 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ---ICQRSGLSSFQIGPTSTISSFAQ 158
           L +  S +  +HPE             VA+F  Q   I +R+ L  +      TI+    
Sbjct: 75  LLVVTSAVRAQHPE-------------VAAFAAQRIPIVKRAALLGWLAASYRTIAVAGT 121

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVT---HVSVEASSHGLDQHRLDGIKLIA--------- 206
             + TT   I LA     L + G+T    +  E    G    RL G  L           
Sbjct: 122 HGKSTTCGMIALA-----LDAAGLTPGFAIGAEVRDLGGTSARLPGGNLFVVEADEYDYS 176

Query: 207 --------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                       N+  DH D    + +   A  R    L P  + A+++ADD  +  V  
Sbjct: 177 FLFLEPDIAVVLNVDHDHPDLFPDRASVARAFRRFLARLRPVGT-AVVWADDPVACAVAD 235

Query: 259 RAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              + G RV++ G   +  + +    A+ +         G  +     +PG     NA  
Sbjct: 236 ELQSRGHRVVTFGETAEAAYRVLPDGALRDPS-------GAIWPLALAVPGRHNRLNAAA 288

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    + +G+   + +  LE  + V  RFE VG  + G R+ +DYAH    +   +   R
Sbjct: 289 AVAAVVQVGVPLVVAVRALEHFNGVGRRFEEVGIVN-GVRVILDYAHHPREIAATIAAAR 347

Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAE 431
               + R+  VF         +       AL+ AD+A+V +     E P         A 
Sbjct: 348 ERFPAARLWAVFQPHTYSRTARFLTEFAHALEQADLAVVAEIYAAREQPLAGIDAAALAS 407

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I  IP  I   + + A  T    +   DV++V G G
Sbjct: 408 AIRRIPA-IAVPDPMAAAETVGAAMRAGDVVLVLGAG 443


>gi|206889186|ref|YP_002248401.1| folylpolyglutamate synthase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741124|gb|ACI20181.1| folylpolyglutamate synthase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 438

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 45/245 (18%)

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYF-N 228
           AL Y   +G+ +  +E    G    RLD   ++       TN+G DH ++     A    
Sbjct: 123 ALQYFKEKGIEYAVIETGMGG----RLDATNVVNPLISVITNIGLDHQEFLGADLASIAK 178

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K  + +  +P  S +         K ++K+A      +    Y   FI + K       
Sbjct: 179 EKAGIIKNGIPVVSSS---QKKEVEKVIIKKAEEMESPLFI--YDRDFIGVLK------- 226

Query: 289 QQVTISVEGKDFDF----------------LFPLPGEFQVYNALVAAGLCIAI--GIDSA 330
              ++S+EG  FDF                  PL G  Q+ N  VA    I I    +  
Sbjct: 227 ---SMSLEGIVFDFYPFSFQPSTSSLQSNLFLPLTGFHQLENVSVALKAFINIYPMYNEN 283

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E L+ + + PGR E +           D AH  ++ E+++K+++T+T  + +VVF  
Sbjct: 284 AIKEGLKNVKI-PGRLEIIYDKPLA---VFDIAHNPDAAEVLIKSLKTLTDKKPVVVFAM 339

Query: 391 GGDRD 395
             D++
Sbjct: 340 MRDKN 344


>gi|170738609|ref|YP_001767264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate--D-alanyl-D-alanyl ligase
          [Methylobacterium sp. 4-46]
 gi|168192883|gb|ACA14830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate--D-alanyl-D-alanyl ligase
          [Methylobacterium sp. 4-46]
          Length = 485

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
          ++ +S D+R ++ G +F AI G + DGH F+  A+A+GA A VVS A +
Sbjct: 28 LSGLSIDTRTLKVGDLFFAIRGEQRDGHDFVRDALARGAGAAVVSQARA 76


>gi|304411645|ref|ZP_07393257.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|307306303|ref|ZP_07586048.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
 gi|304349833|gb|EFM14239.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|306911176|gb|EFN41603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
          Length = 439

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 28/149 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++             A    
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMAREAGIA------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +  P       AL  L       V +E SS  L+      +K +  +  N+  DH+D + 
Sbjct: 144 IGVP-------ALDLLHENADLFV-LELSSFQLETTH--SLKCVVATCLNISEDHMDRYS 193

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADD 250
              AY  AK+RL+     K+S A+++  D
Sbjct: 194 DIAAYREAKLRLY-----KQSRAVLFNRD 217


>gi|292490622|ref|YP_003526061.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
 gi|291579217|gb|ADE13674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
          Length = 452

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 33/188 (17%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ Q AE +V+S   +L + +  +     I V+ +    + LFA   + + P  ++A+TG
Sbjct: 69  ALMQQAERLVISPGVALSEPAIQVAQARGIPVLGD----IELFA--YWAQAP--VIAITG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+V   V+ + +++G      G             L  P+   L K +  L    +
Sbjct: 121 SNGKSTVTVLVEAMARQAGKKVLSGG------------NLGLPALELLEKPVPDLYVLEL 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +   +E +S          +  +A    N+  DH+D +   +AY  AK R++        
Sbjct: 169 SSFQLETTST---------LNAVAACILNISPDHMDRYPNLEAYVQAKGRVYH----GTG 215

Query: 243 PAIIYADD 250
             +I ADD
Sbjct: 216 AMVINADD 223


>gi|262189738|ref|ZP_06048096.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
 gi|262034382|gb|EEY52764.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
          Length = 403

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 51/331 (15%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + Q  +  A      PI+      +   + A  +  +H    +AV GT GK++
Sbjct: 2   VVVSTAINEQNPEIQAAREKRIPIV------RRAEMLAELMRFRHG---IAVAGTHGKTT 52

Query: 129 VASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGVT 183
             + V QI   +GL  +F  G    + S   + RL + S I +A+A     S+L  Q + 
Sbjct: 53  TTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADESDASFLHLQPMV 109

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +     +  +D +         G F NL +  ID+                  LP    
Sbjct: 110 TIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------------LPFYGQ 146

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
           AI+  DD   +E++ R      +V++ G+ +   + ++       + Q T+  +GK + D
Sbjct: 147 AILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKANLD 203

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV- 360
               +PG     NA  A  +     I    +L  +        RF+ +G    G  + + 
Sbjct: 204 ITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGEFETGNGVAML 263

Query: 361 --DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             DY H    +++ +K  R      R++++F
Sbjct: 264 VDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 294


>gi|160903252|ref|YP_001568833.1| Mur ligase middle domain-containing protein [Petrotoga mobilis
          SJ95]
 gi|160360896|gb|ABX32510.1| Mur ligase middle domain protein [Petrotoga mobilis SJ95]
          Length = 430

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
          DSR +  G +F+ + G K DGHLFI  A+  GA  ++V
Sbjct: 15 DSRKVNEGDVFLCLKGEKTDGHLFINDALKNGASYVIV 52


>gi|33862300|ref|NP_893860.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9313]
 gi|44888177|sp|Q7V9C3|MURC_PROMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33640413|emb|CAE20202.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 488

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 19/183 (10%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPK-ESPAIIYADDAYSKEVMKRAHN 262
           G  TNL  DH D++       N   R  +    LL   + P +    DA +   +K +  
Sbjct: 193 GVITNLELDHTDHYANLDELINTMKRFGQGCRRLLANFDCPILKEHFDATAWWSVKTS-- 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           AG    ++           +C   ++    I  +GK       P+PG   + NA+ A   
Sbjct: 251 AGVDFAAL----------PICLNGDQTIADIYEQGKRMGQITLPMPGLHNLSNAMAAIAA 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-T 380
           C   G+    V + L  L     RF+F GT   G +I  DYAH  + +   L   R I T
Sbjct: 301 CRLEGLSFEDVQQGLADLQPPGRRFDFRGT-WEGRQIVDDYAHHPSEVSATLTMARLIVT 359

Query: 381 SGR 383
           SGR
Sbjct: 360 SGR 362


>gi|145220553|ref|YP_001131262.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189029018|sp|A4SH01|MURC_PROVI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145206717|gb|ABP37760.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 469

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL A    + +G+D A ++  L     +  RF+    N RG  +  DYAH 
Sbjct: 275 VPGRHNVQNALAAFATGLELGLDPARLVHGLGCYSGMRRRFQIKYDNGRGLLVVDDYAHH 334

Query: 366 SNSLEMILKNIRT-ITSGRIIVVF 388
            + ++  LK  R    S RI+ VF
Sbjct: 335 PSEVKATLKAARNGWPSARIVAVF 358


>gi|126172652|ref|YP_001048801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS155]
 gi|125995857|gb|ABN59932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS155]
          Length = 439

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 28/149 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +G++             A    
Sbjct: 97  VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMAREAGIA------------VAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +  P       AL  L       V +E SS  L+      +K +  +  N+  DH+D + 
Sbjct: 144 IGVP-------ALDLLHENADLFV-LELSSFQLETTH--SLKCVVATCLNISEDHMDRYS 193

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADD 250
              AY  AK+RL+     K+S A+++  D
Sbjct: 194 DIAAYREAKLRLY-----KQSRAVLFNRD 217


>gi|298243532|ref|ZP_06967339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556586|gb|EFH90450.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 478

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 37/229 (16%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            E   DSR ++ G +F+AI G K DGH FI +A   GA A + +  + ++D         
Sbjct: 33  TEAHHDSRQVKPGDLFIAIKGAKVDGHAFIHKAAQAGASAALCT--HPVEDVPEGFLQ-- 88

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSG-----LSS 144
             +VV +    L   A     + PE   + +TG++GK+S    +  + +R       L+S
Sbjct: 89  --IVVPDVVAALHATARARTRRQPETTYIGITGSNGKTSTKEAIAAVLERHAPTLKTLAS 146

Query: 145 F--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +IG   T+      +R           A+  + +Q V  + +           L GI
Sbjct: 147 YNTEIGYPLTLLRLEPQHRY----------AVLEMGAQWVGELKM-----------LSGI 185

Query: 203 KLIAGS-FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                S  TN+G  H+ Y  +Q+    AK  L + L P +  A++  DD
Sbjct: 186 TCPDWSVITNVGASHLGYFGSQEQVVIAKSELVQVLSP-DGIALLNYDD 233


>gi|149922481|ref|ZP_01910913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
 gi|149816676|gb|EDM76168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
          Length = 468

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 123/314 (39%), Gaps = 45/314 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+L  +  + +  E  L +TGT+GKS+V +    + +  G S+F  G             
Sbjct: 112 LALLVAASWPRSLETAL-ITGTNGKSTVTALTGALLEAGGRSTFTGG------------N 158

Query: 162 LTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-GSFTNLGRDHIDY 219
           L  P S + LA A      +    + +E SS+ L+  R+ G   ++     N+  DH+D 
Sbjct: 159 LGVPLSELVLAVARG--EREAPEALVLECSSYQLETLRVHGSPAVSVAMLLNVSPDHLDR 216

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           + + + Y   K R+F  L P    A++ A DA++  + +    A   VL  G   +    
Sbjct: 217 YDSLEHYAETKGRVFGGLEPG-GLALLSARDAFTPRLRRFVPEAARCVLVDGEDDR---- 271

Query: 280 KKVCAIHNKQQVTISVE---GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                    +    S+E   G+  D     L G     NAL A      +G+        
Sbjct: 272 --------PRLSDASLELGAGESIDRRALALAGRHNALNALFAVLAARHLGVSLDTCEAT 323

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L +   +P R   +    R G  Y D +  +N +  +L  +       +++   CGG   
Sbjct: 324 LRRFQALPHRMNPIA--ERDGVRYFDDSKATN-VASVLAGLDGFEQTFVLI---CGGRAK 377

Query: 396 QGK-----RPIMGK 404
            G      RP++ +
Sbjct: 378 DGDDLGALRPVLAR 391


>gi|153830363|ref|ZP_01983030.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
 gi|148874170|gb|EDL72305.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
          Length = 403

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 51/331 (15%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + Q  +  A      PI+      +   + A  +  +H    +AV GT GK++
Sbjct: 2   VVVSTAINEQNPEIQAAREKRIPIV------RRAEMLAELMRFRHG---IAVAGTHGKTT 52

Query: 129 VASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGVT 183
             + V QI   +GL  +F  G    + S   + RL + S I +A+A     S+L  Q + 
Sbjct: 53  TTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADESDASFLHLQPMV 109

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +     +  +D +         G F NL +  ID+                  LP    
Sbjct: 110 TIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------------LPFYGQ 146

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
           AI+  DD   +E++ R      +V++ G+ +   + ++       + Q T+  +GK + D
Sbjct: 147 AILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKANLD 203

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV- 360
               +PG     NA  A  +     I    +L  +        RF+ +G    G  + + 
Sbjct: 204 ITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGEFETGNGVAML 263

Query: 361 --DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             DY H    +++ +K  R      R++++F
Sbjct: 264 VDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 294


>gi|56696089|ref|YP_166443.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria pomeroyi DSS-3]
 gi|81350286|sp|Q5LU62|MURC_SILPO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56677826|gb|AAV94492.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria pomeroyi DSS-3]
          Length = 465

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  R  ++ Y+G   H   +      Q   + +EG       P+PG+  V NAL A  + 
Sbjct: 248 ADVRATNLTYKGGVAHFDILL-----QHEDMVIEG----CTLPMPGDHNVSNALSAVAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+ +  +   L     V  RF  VG    G  I  DY H    +  +LK  R  + G
Sbjct: 299 RHLGMKADEIRAALAAFGGVNRRFTKVG-EVNGVTIIDDYGHHPVEIAAVLKAARQASEG 357

Query: 383 RIIVV 387
           R+I V
Sbjct: 358 RVIAV 362


>gi|83942742|ref|ZP_00955203.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. EE-36]
 gi|83846835|gb|EAP84711.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. EE-36]
          Length = 471

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG+  V NA+ A  +   +G+ +  +   L     V  RF  VG    G  I  
Sbjct: 277 DCSLPMPGDHNVSNAMAAVAVSRHLGMKTEEIRAALAGFGGVNRRFTKVG-EVDGVTIID 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    +  +LK  R  T GR+I V
Sbjct: 336 DYGHHPVEITAVLKAARQATEGRVIAV 362


>gi|319937676|ref|ZP_08012079.1| hypothetical protein HMPREF9488_02915 [Coprobacillus sp. 29_1]
 gi|319807111|gb|EFW03725.1| hypothetical protein HMPREF9488_02915 [Coprobacillus sp. 29_1]
          Length = 403

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 76/385 (19%), Positives = 153/385 (39%), Gaps = 64/385 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPI----- 168
           +N++ + GT+GK S  ++++ I    G   F++G  ++      ++R+     PI     
Sbjct: 39  KNMIHIAGTNGKGSTVNYLRSILNAHG---FRVGTFTSPYLICHNDRIRVDDQPISDEDL 95

Query: 169 --YLAK-------------------ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             Y+ +                    L+Y  S  + +  +E    GL   + + I  I  
Sbjct: 96  LKYVNQYYDIIEEDGLSMFEIDVLIMLAYFQSLDLDYRIIETGIGGL-HDKTNVIDPIIS 154

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + TN+G DH      Q+    +   +  E +    P  ++        ++ R        
Sbjct: 155 AITNIGMDH------QKQLGESIYDIINEKMGIIKPHQMFITSEAKGTILARLQEQCDVQ 208

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA--- 324
            +V Y         V   +   +       ++  F     G +QV NA +A  L IA   
Sbjct: 209 EAVMY---------VVPEYQVSRYPFHFRYRNMAFTLKNQGIYQVTNARLA--LTIASKL 257

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I +D+ L    +E      GR+E +    + G + +D AH    ++ +++ +R      I
Sbjct: 258 ITLDTQLTTSAIENA-AWKGRYETLP--YQDGTVEIDGAHNLPGIKALIQTLRVKKEENI 314

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            ++F C  D+D   +P++  +  +   + + T ++ R+ D   + ++     P  I   N
Sbjct: 315 SIIFSCLDDKD--VQPMLDLMLKEGYTVYLTTFNDDRAIDITTVESQ-----PHLIIVDN 367

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGH 469
            +EA++TA     K+  +V+ G  H
Sbjct: 368 FVEALQTA---YIKKSHIVITGSLH 389


>gi|257462517|ref|ZP_05626929.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. D12]
 gi|317060172|ref|ZP_07924657.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D12]
 gi|313685848|gb|EFS22683.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D12]
          Length = 447

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 10/182 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH++ H   +   N K + F + + +    ++   D  +   ++   +   ++ S
Sbjct: 173 TNIEEDHLETHGNLE---NIK-KSFRQFVDQTERQVLVCKDCVN---VRSVFSENEKITS 225

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGI 327
            G  Q   I  K +  +  K    +  EG++   F   +PG+  + N+L      +  G+
Sbjct: 226 YGIEQEADIMAKNIEIVDGKTSFEVWTEGENQGRFSISIPGKHNILNSLPVIYFALKFGV 285

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGRIIV 386
               + + L        R++ +  +    R I  DYAH    ++  LK +++I +G+II 
Sbjct: 286 SKEEIQDKLLHFRGSKRRYDILYWDQEKNRKIIDDYAHHPTEIQATLKGVKSIETGKIIG 345

Query: 387 VF 388
           +F
Sbjct: 346 IF 347


>gi|187918670|ref|YP_001884237.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia hermsii DAH]
 gi|119861518|gb|AAX17313.1| UDP-N-acetylmuramate--alanine ligase [Borrelia hermsii DAH]
          Length = 486

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 111/285 (38%), Gaps = 46/285 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G+ GK++ A+F+  +    GL    +   +++  F   + L     I++A+   Y 
Sbjct: 135 IGVAGSHGKTTTAAFLGMLFNSLGLQP-NVILGASVKDFKNKSSLVGQGNIFIAETCEY- 192

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 H S             D I L     +N+  +H+D+ +  +A  N  ++     
Sbjct: 193 -RNHFLHFSP------------DMIVL-----SNIDYEHVDFFENYEAVLNVFLKYINN- 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L +    II AD+    ++  +      +V SVG+           A    +   +  E 
Sbjct: 234 LKQNGILIINADEVNLLKITNKILRKDIKVFSVGFNS--------LADFKIEHFEVIDEF 285

Query: 298 KDFDFLFPLPGEFQ---VYNALVAAGLCIAIGI----DSALVLEHLEKLHVVPG------ 344
             FDFL  +    +   ++N L  A   +A+ +       LV    E++ +V        
Sbjct: 286 LKFDFLGGIDIRLRTPLIHNVLNFASALLALKLFLEEHKKLVWSFDERIKIVAKEYMGIK 345

Query: 345 -RFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVV 387
            R EF+    + G IY+ DYAH    +E  L  ++     R I++
Sbjct: 346 RRMEFIM--EKDGVIYLDDYAHHPKEIESTLLGLKNFYKDRRIIL 388


>gi|33860582|ref|NP_892143.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|44888175|sp|Q7V3P8|MURC_PROMP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33633524|emb|CAE18481.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 297 GKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354
           GK  D +  P+PG   + N   A   C  +G+    + ++ E L +   RFEF G  N R
Sbjct: 269 GKFIDIINIPVPGLHNLSNITAAIAACRMVGVSFKEIKKNTESLKLPKKRFEFRGEINQR 328

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              IY DYAH  N ++       TI   R+ +      DR++  R I
Sbjct: 329 --IIYDDYAHHPNEIKA------TIDLARLFIKDKNSSDREEKGRLI 367


>gi|30316070|sp|Q8RDQ1|MURD_FUSNN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 432

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 28/156 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 93  IIAITGTNGKSTTTAKISDMLNHAGYKATYAGN--------------------IGRSLSE 132

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ +++   Y+N K    
Sbjct: 133 VLLKEKDLDFISLELSSFQLEN--IENFKPCISMIINIGPDHIERYKSFDEYYNTKFN-- 188

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
             +   ++  + + ++   +E+ KRA     + +SV
Sbjct: 189 --ITKNQTEDLYFIENIDDEEIEKRAKQIKAKRISV 222


>gi|253689955|ref|YP_003019145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756533|gb|ACT14609.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 438

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 29/155 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A    L  P+ +Y+ +  S+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIGLPAL-QLLEQPAQLYVLELSSF 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S+ A+               A +  N+  DH + Y    Q Y  AK+R++E
Sbjct: 163 ---QLETTSSLHAA---------------AATILNVTEDHTNRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                    ++ ADDA +  V  R  +A CR   V
Sbjct: 205 H----ADLCVVNADDALTMPV--RGADARCRSFGV 233


>gi|83953981|ref|ZP_00962702.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83841926|gb|EAP81095.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. NAS-14.1]
          Length = 471

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG+  V NA+ A  +   +G+ +  +   L     V  RF  VG    G  I  
Sbjct: 277 DCSLPMPGDHNVSNAMAAVAVSRHLGMKTEEIRAALAGFGGVNRRFTKVG-EVDGVTIID 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    +  +LK  R  T GR+I V
Sbjct: 336 DYGHHPVEITAVLKAARQATEGRVIAV 362


>gi|257452943|ref|ZP_05618242.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|317059484|ref|ZP_07923969.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|313685160|gb|EFS21995.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_5R]
          Length = 447

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 12/183 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH++ H   +       R F E    E   ++  D A  + V   +     ++++
Sbjct: 173 TNIEEDHLETHGNLEN-IEKSFRQFVE--QTERKVLVCTDCANVRTVFSESE----KIMT 225

Query: 270 VG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIG 326
            G  Y+   I  K V  ++ K    + ++G+    F   +PG+  + N+L      +  G
Sbjct: 226 YGMDYEAN-IMAKNVEIVNGKTSFEVLIQGESQGRFYISIPGKHNILNSLPVIYFSLLFG 284

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGRII 385
           +    + + L        R++ +  +    R I  DYAH    ++  LK +++I  G+II
Sbjct: 285 VPKEEIQDKLLHFRGSKRRYDVLYWDQENNRKIIDDYAHHPTEIQATLKGVKSIEKGKII 344

Query: 386 VVF 388
            +F
Sbjct: 345 GIF 347


>gi|91792018|ref|YP_561669.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
 gi|91714020|gb|ABE53946.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
          Length = 464

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 118/287 (41%), Gaps = 40/287 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK+S +S +  I + SG    F IG      +F    RL   S  ++ +A  
Sbjct: 109 VLAVSGTHGKTSTSSMLAWILEYSGYEPGFLIG--GVPQNFGVSARLGN-SNFFVVEADE 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ---TQQAYFNAKMR 232
           Y S+        + S     Q R     L+     NL  DH D        Q  FN  +R
Sbjct: 166 YDSA-----FFDKRSKFVHYQPR----TLV---INNLEFDHADIFDDLTAIQRQFNHVIR 213

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P +   I  A+    ++V++    +     S G      + +K    H K   T
Sbjct: 214 T----VPGQGKIIWPANSEAVQQVIEMGCWSEQETYSAGVHD--FNTEKTLGWHAK---T 264

Query: 293 ISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           +S +  +F+  F           L G+  V NA++A      +G+  A  +  L +    
Sbjct: 265 LSADAHEFEVYFDGHSQGVMSWNLIGQHNVENAVMAIAAARHVGVVPAQAMAALSEFSPP 324

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             R E +GT   G  ++ D+AH   +++  L+ +R  + +G+I VV 
Sbjct: 325 KRRLELLGTIG-GVAVFDDFAHHPTAIDSTLQGLRAKVGNGKITVVL 370


>gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 488

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 146/379 (38%), Gaps = 56/379 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR + AG +F+A+ G + DGH  +  A+  GA A +VS         A I ++  +
Sbjct: 39  VCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSR------IPAGIATDR-L 91

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-------SGLSSF 145
           LVV++T + L   A     +    ++ VTG+ GK+     + Q   R        G  + 
Sbjct: 92  LVVEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNLNN 151

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLA----KALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             G   T++    D  L     I L       L  L+     HV++              
Sbjct: 152 HFGLPLTLARMPADTDLAV---IELGMNHPGELGPLARLARPHVAI-------------- 194

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   TN+   H+++  + +A  +AK  + E + P  +  ++  D+ + + + + A 
Sbjct: 195 -------ITNVAAVHLEFFDSVEAIADAKAEILEGVEPGGT-VVLNRDNRFFERLRRAAA 246

Query: 262 NAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  + LS G           CA+        ++ G D   +   + G     N+L   
Sbjct: 247 ARGIDKTLSFGNHIGADARVLDCAVDANGTAVFALIGDDPLAYRMAVEGRHWALNSLGVL 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMI--- 372
            +  A+G+D       L   +VVP    GR + V     G    +D A+ ++   +I   
Sbjct: 307 AVVRALGLDIHSAANGLA--NVVPPRGRGRRQSVSLGGDGAIQVIDDAYNASPESVIAAL 364

Query: 373 --LKNIRTITSGRIIVVFG 389
             L   R    GR I V G
Sbjct: 365 TTLSMTRPGPRGRRIAVLG 383


>gi|332678415|gb|AEE87544.1| Cyanophycin synthase II [Francisella cf. novicida Fx1]
          Length = 561

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 117/295 (39%), Gaps = 28/295 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTVRLTDYICRVAGKLT---GYTSTDWVKVNDELIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKSIVFRA- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHNKQQVTI 293
           L + S  II  D++Y KE   +   A   V     Q     +L K    C + +   V +
Sbjct: 293 LGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYACIVEDGNFVWV 352

Query: 294 SVEGKDFDFLFPLP---------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP- 343
               K    + P+           +  + NA++A  L   +GI   ++ + L      P 
Sbjct: 353 EANSK--KVILPVVEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKALRSYSNDPK 410

Query: 344 ---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
              GR      +++     +DYAH    +E +L  ++     G+  ++ G  GDR
Sbjct: 411 VNRGRANVFEWDNKVA--ILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGDR 463


>gi|323099951|gb|ADX23551.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus mycoides]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 28/210 (13%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G+++      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVEMFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           A   +VM   A + G +VL    +    G +I   K  A++ K +    V     D +  
Sbjct: 227 A---DVMTLSAQSKGQKVLFSTTKEIEDGAYI---KENALYYKGEKVAEVS----DIV-- 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAH 364
           LPG+  + N L A  +   +G+ +  +   L+    V  R E+V T N+R  + Y D   
Sbjct: 275 LPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNR--KFYND--- 329

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            S +  M+          + IV+   G DR
Sbjct: 330 -SKATNMLATEKALSAFTQPIVLLAGGLDR 358


>gi|312136986|ref|YP_004004323.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224705|gb|ADP77561.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 476

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 128/317 (40%), Gaps = 36/317 (11%)

Query: 91  PILVVDNTRKFLSLFASRLYGKH--PENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           PI++V N  +  S FA +   K+  P    + +TGT+GKS+    +  I   +G  +F  
Sbjct: 78  PIILV-NKIELASAFAIKWTIKNFAPNTYRVVITGTNGKSTTTHMIYHILTHAGKKAFT- 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASS--HGLDQHRLDGIKL 204
             T   S F   N L  P    +AK L+  +  + + ++ +E S     LD+   D   L
Sbjct: 136 -NTDAKSEF---NTLIDP---MVAKLLAEKAKKENLEYLVIEVSEVQGWLDRLMKDHAYL 188

Query: 205 IAGSFTNL-------GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           +  S             DHI    + +  F       + L  ++  A++  D+ ++++ M
Sbjct: 189 MTKSINPNVVVVTNVALDHIGLVNSIEEVFEETSGAVKAL--EKGFAVLNYDNEFTRK-M 245

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            +  N   +V   G         K   I+    + I  E        P   E+ + N L 
Sbjct: 246 AKLTNKNVKVFFYGKNCPVTF--KSGGIYVNNDLFIKKEE------LPFKSEYFIQNTLA 297

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A   C+ + I   ++ + +     +  RF  +    +   I  D+AH  + ++M +K+ +
Sbjct: 298 AISACLCLNIPPDIIKKGILTYKPLKRRFSIL---CKKPLIIDDFAHNPDGIKMAIKSAK 354

Query: 378 TITSGRIIVVFGCGGDR 394
            +T  ++ VV    G R
Sbjct: 355 KLTKNKLWVVCAIRGSR 371


>gi|257125000|ref|YP_003163114.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
 gi|257048939|gb|ACV38123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
          Length = 459

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 143/333 (42%), Gaps = 50/333 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I++ TGT+GK++ ++ + ++   SG  +                +L   +    AK ++ 
Sbjct: 93  IISFTGTNGKTTTSTKMAELLNFSGFRA----------------KLAGNAGFSFAKLVA- 135

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              + + ++ +E SS+ L+ +    I        NL  DH+  + + + Y+  K  +F++
Sbjct: 136 -DEEKLDYIVLELSSYQLENNP--QIHSNIAGIINLTPDHLTRYNSVEDYYITKFNIFDK 192

Query: 237 LLPKESPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQ 290
            +  +  A+I  DD      Y +  +K    +    LS   +G  F++   +C + + ++
Sbjct: 193 QVESDF-ALINLDDKEFEKLYERNEIKEKIKSKKIYLSTETKGTIFVYKNDICIMKDFKK 251

Query: 291 VTISVEGKDFDF-----------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               +E  D +               L G+  + N L   G    + I +  + E L+  
Sbjct: 252 RIDEIENFDENVDKVSEILMKTDELSLKGKHNLENMLFLIGSAKILNISNEKISEFLKST 311

Query: 340 HVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
             +  R E  F+    +G  I+++ +  +N +E  LK I +  +  II++ G G D+   
Sbjct: 312 VALEHRLENFFI----KGNTIFINDSKGTN-VESTLKAIDSFDNS-IIMILG-GDDKKID 364

Query: 398 KRPIMGKIALDLADIAIVTDDNPR--SEDPEKI 428
             P++ +I  + AD   +  DN +   +D EKI
Sbjct: 365 NMPLIERIK-EKADFVYLIGDNAQILIDDMEKI 396


>gi|254374519|ref|ZP_04990000.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151572238|gb|EDN37892.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 561

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 117/295 (39%), Gaps = 28/295 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTVRLTDYICRVAGKLT---GYTSTDWVKVNDQLIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKSIVFRA- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHNKQQVTI 293
           L + S  II  D++Y KE   +   A   V     Q     +L K    C + +   V +
Sbjct: 293 LGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHNMKYYLAKADYACIVEDGNFVWV 352

Query: 294 SVEGKDFDFLFPLP---------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP- 343
               K    + P+           +  + NA++A  L   +GI   ++ + L      P 
Sbjct: 353 EANSK--KVILPVVEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKALRSYSNDPK 410

Query: 344 ---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
              GR      +++     +DYAH    +E +L  ++     G+  ++ G  GDR
Sbjct: 411 VNRGRANVFEWDNKVA--ILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGDR 463


>gi|109947254|ref|YP_664482.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
 gi|109714475|emb|CAJ99483.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
          Length = 493

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 138/337 (40%), Gaps = 58/337 (17%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           ++++L +   ++       ++A+TG+ GK+S  +F+ QI Q            +T+   A
Sbjct: 151 SKQYLQIAKDKIASLKSLKVIAITGSFGKTSTKNFLHQILQTKFNVHASPKSVNTLLGIA 210

Query: 158 QD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
            D    L   S IY+A+A +   ++G     ++  +H ++ H            T +G  
Sbjct: 211 NDINQNLEDSSEIYIAEAGA--RNKG----DIKEITHLIEPH--------LAVITEVGEQ 256

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQ 273
           H++Y +T +     K  L +                      KR  NA C  +     Y 
Sbjct: 257 HLEYFKTLENICETKAELLDS---------------------KRLENAFCYSIETIKPYA 295

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIA 324
                L    ++    Q T+  +G  F+ L           + G+F  YN  +A  +   
Sbjct: 296 PNNAPLIDYSSLVKNIQSTL--KGTFFEMLLDGVWESFGTKVLGKFNAYNIALAILIAKH 353

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSG 382
           +G+++  + + +  L+ +  R + +  N    ++ +D +   N L+ +L+ IR  ++  G
Sbjct: 354 LGLETERIKQLVLNLNPIAHRLQLLEVNQ---KVIIDDSFNGN-LKGMLEGIRLASLYEG 409

Query: 383 R-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           R +IV  G      +    +  KI  ++ D+AI+T +
Sbjct: 410 RKVIVTPGLVESNTESNETLAKKIN-EVFDVAIITGE 445


>gi|88811840|ref|ZP_01127093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrococcus mobilis
           Nb-231]
 gi|88790724|gb|EAR21838.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrococcus mobilis
           Nb-231]
          Length = 445

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IVVS   SL + +        I V+ +   F    A+         +LAVTGT+GKS
Sbjct: 67  AEEIVVSPGVSLAEPALCAARAEGIPVIGDIELFARAAAA--------PVLAVTGTNGKS 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + + ++ + +GL            + A    L  P       AL  L    V    +
Sbjct: 119 TVTALLGEMARAAGL------------NVAVGGNLGPP-------ALELLQLPQVQLFVL 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +  +   A S  N+  DH+D +    AY  AK  +F      +   I+ 
Sbjct: 160 ELSSFQLES--VYSLNAQAASLLNIAPDHLDRYPNIAAYLEAKAVIFR----GDGVMILN 213

Query: 248 ADD 250
           ADD
Sbjct: 214 ADD 216


>gi|309379062|emb|CBX22364.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 452

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   +A GA A+VV
Sbjct: 8   FICQALKLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVV 67

Query: 74  S--SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           S     SL+D           L VD+T   L   A          +  +TG+ GK++V  
Sbjct: 68  SREDCASLKD----------ALKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKE 117

Query: 132 FVQQICQR 139
            +  + +R
Sbjct: 118 MLAAVLRR 125


>gi|237785344|ref|YP_002906049.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758256|gb|ACR17506.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 537

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 126/359 (35%), Gaps = 86/359 (23%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----- 173
           + GT GK+S  S      Q++G+  SF +G    +S+   +    T S +++A+A     
Sbjct: 148 IAGTHGKTSTTSLAVIALQQAGMDPSFAVG--GQLSTTGTNAHHGTGS-VFVAEADESDA 204

Query: 174 --LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L+Y  +  V                           TN+  DH+D++ ++Q+Y +   
Sbjct: 205 SLLTYSPNVAV--------------------------VTNIEADHLDFYGSEQSYVH--- 235

Query: 232 RLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK------------- 275
            +F+E   +       ++  DD ++  + +R    G R+  +GY                
Sbjct: 236 -VFDEFADRIVDGGYLVVCVDDPHAAALAERIVQQGNRINVIGYGTSDACTRHPSIPVGA 294

Query: 276 ----------------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                            I L    + +N        E         +PG+  V NA+ A 
Sbjct: 295 EITEITPKPDRTDALIRISLPAHASANNSAGEANEAETSTHRVEMHIPGKHMVLNAVAAI 354

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGRIYVDYAHTSNSLEMILKN 375
              + +G D    +  +     V  RFE  GT S     G  +Y DYAH    +  +L  
Sbjct: 355 VSSVLVGADRERAVSGVNGFQGVRRRFESHGTISHVYYEGASVYDDYAHHPTEVRAVLTA 414

Query: 376 IRTITSG---------RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            R              R+IVVF         +       AL LAD AIV D     E P
Sbjct: 415 AREKIQAMDPVEGHQRRVIVVFQPHMYSRTEEFASEFAEALSLADEAIVMDIYGAREKP 473


>gi|294666197|ref|ZP_06731451.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604015|gb|EFF47412.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 452

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 138/355 (38%), Gaps = 73/355 (20%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS---LFASR-LYGKH 113
           + P  I+  A  ++V +A S        R N  +  V+D  R++ S     A R L G+ 
Sbjct: 54  YAPSNISPDATEVIVGNALS--------RGNPAVEAVLDAGRRYTSGAQWLAERVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + LAV GT GK++  + +  + + +G +     P   I   A+D              
Sbjct: 105 --DTLAVAGTHGKTTTTTILSYLLEAAGRA-----PGFLIGGVAEDF------------G 145

Query: 174 LSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +S    QG   V VEA  +       + +    + +     NL  DH D      A    
Sbjct: 146 VSARLGQGREFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAI--- 201

Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCA 284
             R F  L+   P     I+  +DA+  EV+      GC   V   G++       ++  
Sbjct: 202 -QRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTPVERFGFEASLDWSARL-- 254

Query: 285 IHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                   I+ +G  F  L          +PL G   V N L A     A G+D A V+ 
Sbjct: 255 --------IAADGSAFAVLHRGVGIGQVQWPLVGRHNVLNGLAALAAVQAAGVDPATVMP 306

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            L +   V  R E +G N+R   +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 307 ALAQFQSVKRRLEVIG-NARDITVYDDFAHHPTAIATTLQGLRAKVGAARVLVAM 360


>gi|256027427|ref|ZP_05441261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp.
           D11]
 gi|289765390|ref|ZP_06524768.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11]
 gi|289716945|gb|EFD80957.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11]
          Length = 432

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 49/248 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 93  IIAITGTNGKSTTTAKISDMLNYAGYKAAYAGN--------------------IGRSLSE 132

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ +++   Y++ K    
Sbjct: 133 VLLKEKDLDFISLELSSFQLEN--IENFKPYISMIINMGPDHIERYKSFDEYYDTKFN-- 188

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQV 291
             +   ++  + + ++    E+ KRA     + +SV    K   F+   K+   H K  +
Sbjct: 189 --ITKNQTEDLYFIENIDDVEIEKRAKQVKAKRISVSKFKKADIFVENDKIY--HGKDSI 244

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---------ALVLEHLEKLHVV 342
                  D D L  L G   + N L        + ID          A  LEH  +L   
Sbjct: 245 I------DVDKL-SLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFT 297

Query: 343 PGRFEFVG 350
            G+ +F+ 
Sbjct: 298 YGKLKFIN 305


>gi|229528610|ref|ZP_04418000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
 gi|229332384|gb|EEN97870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
          Length = 467

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+  H +  ++A+TG++GKS+V      +   +G+ +            A    +  P 
Sbjct: 127 ELFAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKA------------AVGGNIGVP- 173

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  +S     +V +E SS  L+      +KL A +F NL  DH+D +Q  + Y
Sbjct: 174 ------ALDLISPDVELYV-LELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMEDY 224

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+R+F+     E+  +    +AY  +     H A  +V++ G             + 
Sbjct: 225 RQAKLRIFDH---AETAVV----NAYDTQTFPD-HAAHLQVVTFG-------------VE 263

Query: 287 NKQQVTISV-EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              Q +++  +G+++ F             L G   V N L    L  + G++  L L+ 
Sbjct: 264 QAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDA 323

Query: 336 LEKLHVVPGRFEFVGTN 352
           L+    +  R + V  N
Sbjct: 324 LKSYTGLTHRCQVVADN 340


>gi|218780973|ref|YP_002432291.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
 gi|254766048|sp|B8FBS0|MURD_DESAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218762357|gb|ACL04823.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+AVTGT+GK++V S + ++ + SG+S+F  G                 +P+     ++Y
Sbjct: 110 IIAVTGTNGKTTVTSLIGEMMEASGISAFVGG--------------NIGNPL-----VNY 150

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +    V V E SS  LD   ++         TN+  DH+D +   + Y  +K R+F
Sbjct: 151 AKGEDKAQVVVAEISSFQLDT--IESFAPKVALLTNVTEDHMDRYDGMEGYAASKARVF 207


>gi|90580226|ref|ZP_01236033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           angustum S14]
 gi|90438528|gb|EAS63712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           angustum S14]
          Length = 446

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 23/120 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V S V ++ + +G++   +G    I  FA               AL  
Sbjct: 110 VVAITGSNGKSTVTSLVGEMAKEAGIN---VGVGGNI-GFA---------------ALDM 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L+ Q   +V +E SS  L+      ++L A  + NL  DH+D Y      Y  AKMR+F+
Sbjct: 151 LAQQHSLYV-LELSSFQLETTT--SLELTAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFD 207


>gi|238791171|ref|ZP_04634810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
 gi|238729304|gb|EEQ20819.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
          Length = 438

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 99/243 (40%), Gaps = 52/243 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-----QDNRLTTPSPIYLA 171
           ++A+TG++GKS+V + V ++ + +G   +Q+G    I   A     Q+N+L         
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGVPALTLLRQENQLVV------- 156

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAK 230
             L   S Q  T  S+ AS               A +  N+  DH D Y    Q Y  AK
Sbjct: 157 --LELSSFQLETTSSLHAS---------------AATILNVTEDHTDRYPFGLQQYRAAK 199

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +R++E         ++ ADDA +  V      A  R +S G      HL       NKQQ
Sbjct: 200 LRVYE----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQ 244

Query: 291 VTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             I +  +    L      L G     NAL A  L  A+GI  +  L+ L     +  RF
Sbjct: 245 GEIWLRVRGEKVLNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLSHRF 304

Query: 347 EFV 349
           + V
Sbjct: 305 QLV 307


>gi|227113988|ref|ZP_03827644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 438

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 29/155 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A    L  P+ +Y+ +  S+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIGLPAL-QLLEQPAQLYVLELSSF 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S+ A+               A +  N+  DH + Y    Q Y  AK+R++E
Sbjct: 163 ---QLETTSSLHAA---------------AATILNVTEDHTNRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                    ++ ADDA +  V  R  +A CR   V
Sbjct: 205 H----ADLCVVNADDALTMPV--RGADARCRSFGV 233


>gi|6523805|gb|AAF14862.1|AF110740_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
 gi|12060818|gb|AAG48251.1|AF306766_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
          Length = 487

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 126/337 (37%), Gaps = 51/337 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 79  ADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 131

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  +    GL      PT     F    RL          A  YL ++    
Sbjct: 132 GKTTTTSLIASVFAAGGLD-----PT-----FVIGGRLNAAGTNAQLGASRYLVAE---- 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
            + E+ +  L       ++ +    TN+  DH+    T    FN   + F E    LP  
Sbjct: 178 -ADESDASFLH------LQPMVAVVTNIDADHM---ATYGGDFNKLKKTFVEFLHNLPFY 227

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISV 295
             A++  DD   +E++ +         +V Y         V AI+ +Q+        +  
Sbjct: 228 GLAVMCVDDPVVREILPQIARP-----TVTY--GLSEDADVRAINIRQEGMRTWFTVLRP 280

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354
           E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G     
Sbjct: 281 EREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQVE 340

Query: 355 GGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
           GG + +  DY H    +  ++K IR      R+++V+
Sbjct: 341 GGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVY 377


>gi|227486694|ref|ZP_03917010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235282|gb|EEI85297.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 449

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 112/279 (40%), Gaps = 34/279 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GK+S  S V  I    G  ++ +G                     + + + + 
Sbjct: 107 IAITGTNGKTSTTSMVAHILNECGKPAYAVGN--------------------IGEGVLWQ 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +       E SS  L  H     K   G+  N+  DHID+H +   Y N+K++L    
Sbjct: 147 MYEKKGVFVEELSSFQL--HDTQAYKPHIGAILNIKEDHIDWHGSFDDYINSKLKLAANQ 204

Query: 238 LPKESPAIIYADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   I + D+   K +   +A        ++  +G F+   K+C  +    +   ++
Sbjct: 205 DQGDYLVINHEDEISQKHIKDFKAQIYEFSSQNIVDRGLFLEGNKICLRNGGCVIEEILD 264

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +D   +    G     N + A  L    G++ + +++ ++    +  R E+V T S G 
Sbjct: 265 VRDLSVI----GRHNYENVMAAILLTYLYGLNLSEIIKAIKTFKSIAHRLEYVRTLS-GI 319

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDR 394
             Y D   T+     +  +++ I S  R I++   G D+
Sbjct: 320 DFYNDSKGTN-----VDSSVKAIESFDRPILIIAGGYDK 353


>gi|206971160|ref|ZP_03232111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218232675|ref|YP_002368712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus B4264]
 gi|228954189|ref|ZP_04116217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071412|ref|ZP_04204634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|229081165|ref|ZP_04213675.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|229152110|ref|ZP_04280305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|229180188|ref|ZP_04307532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|226711881|sp|B7H6P8|MURD_BACC4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206733932|gb|EDZ51103.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218160632|gb|ACK60624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           B4264]
 gi|228603397|gb|EEK60874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|228631459|gb|EEK88093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|228702209|gb|EEL54685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|228711703|gb|EEL63656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|228805509|gb|EEM52100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 22/207 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G ++L S   + +     K  A++ K +  + V          LPG
Sbjct: 227 A---DVMALSAYSKGQKILFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSN 367
           +  + N L A  +   +G  +  +   L++   V  R E+V T N+R  + Y D    S 
Sbjct: 278 QHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYND----SK 331

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDR 394
           +  M+          + IV+   G DR
Sbjct: 332 ATNMLATEKALSAFTQPIVLLAGGLDR 358


>gi|71735898|ref|YP_276229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|109892721|sp|Q48EF9|MURC_PSE14 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71556451|gb|AAZ35662.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322449|gb|EFW78542.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330082|gb|EFW86069.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874984|gb|EGH09133.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 486

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 168/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 219 PFYGLAVMCIDDPVVREILPLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 275 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 324

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 325 FQVYGELPVEGGNVMLVDDYGHHPREVSAVISAVRGGWPDRRLVMVYQP--HRFSRTRDL 382

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 383 YDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAP 440

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 441 LVKPLLRAGDILLCQGAG 458


>gi|171057209|ref|YP_001789558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
 gi|170774654|gb|ACB32793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
          Length = 489

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 24/228 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + I  V SD+R ++AG +FVA+ G + D H F+PQA A GA A +               
Sbjct: 29  QPIARVHSDTRSLRAGDLFVALRGERFDAHDFLPQAQAAGAVAAIAERGLDA-------- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           S  P + V ++   L   A+    +H   ++AVTG++GK++V   +  I +        +
Sbjct: 81  SGMPGIEVPDSLLALQALAAGWRAEHLLPVIAVTGSNGKTTVTQMIAAILR------AWL 134

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           G  +  ++   +N +  P  +    A   + +   G+ H    A    + Q     + L+
Sbjct: 135 GDAAHATAGNFNNHIGVPLTLLALHAGHRAAVVELGMNHPGEIAELARIAQ---PTVALV 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                N  R+H ++ QT +A       +    LP +  A+  ADD Y+
Sbjct: 192 ----NNAQREHQEFMQTVEAVARENGCVISA-LPADGVAVFPADDDYT 234


>gi|261365114|ref|ZP_05977997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566546|gb|EFC88106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
          Length = 455

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    P     + ++ V +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALNLPTPSENKPVSRVVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|206900799|ref|YP_002250477.1| folylpolyglutamate synthase [Dictyoglomus thermophilum H-6-12]
 gi|206739902|gb|ACI18960.1| folylpolyglutamate synthase [Dictyoglomus thermophilum H-6-12]
          Length = 442

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 13/112 (11%)

Query: 295 VEGKDF--DFLFPLPGEFQVYNALVAAG----LCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +EG+D   +F  PL GE Q+ NA+ A G    L   + ID+ +V +  E +    GRF+ 
Sbjct: 251 LEGRDIKEEFFIPLLGEHQIVNAVTAYGAIYVLKNRLNIDNEVVKKGFENVQ-WRGRFQI 309

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGK 398
           +  N     I VD AH  +S  M LKN     +   R+ ++ G   D+D  K
Sbjct: 310 INKNP---LIVVDGAHNVDS-AMALKNTLESYVNFDRLFLICGIMKDKDAEK 357


>gi|219670075|ref|YP_002460510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfitobacterium hafniense DCB-2]
 gi|254766050|sp|B8FT58|MURD_DESHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219540335|gb|ACL22074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfitobacterium
           hafniense DCB-2]
          Length = 454

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L+  +  L  +G+  +  E SS  L+   +D + +  G   N+  DH+D H T + Y 
Sbjct: 144 VALSDQVENLDEEGI--IVAELSSFQLEL--VDSLCMNVGILLNVTPDHLDRHGTLENYL 199

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEV 256
            AK R+FE+  P +  AI+  DDA  +E+
Sbjct: 200 AAKARIFEKQRPSDC-AILNWDDARVREL 227


>gi|56708206|ref|YP_170102.1| hypothetical protein FTT_1129c [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670677|ref|YP_667234.1| hypothetical protein FTF1129c [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118497701|ref|YP_898751.1| Mur ligase family protein [Francisella tularensis subsp. novicida
           U112]
 gi|134302120|ref|YP_001122089.1| glutamate ligase domain-containing protein [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|194323673|ref|ZP_03057449.1| Mur ligase family, glutamate ligase domain protein [Francisella
           tularensis subsp. novicida FTE]
 gi|224457310|ref|ZP_03665783.1| glutamate ligase domain-containing protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370693|ref|ZP_04986698.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875019|ref|ZP_05247729.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604698|emb|CAG45762.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321010|emb|CAL09145.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423607|gb|ABK89997.1| Mur ligase family protein [Francisella novicida U112]
 gi|134049897|gb|ABO46968.1| glutamate ligase domain protein, Mur ligase family [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151568936|gb|EDN34590.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|194322037|gb|EDX19519.1| Mur ligase family, glutamate ligase domain protein [Francisella
           tularensis subsp. novicida FTE]
 gi|254841018|gb|EET19454.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159424|gb|ADA78815.1| glutamate ligase domain protein, Mur ligase family [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 561

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 118/295 (40%), Gaps = 28/295 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTVRLTDYICRVAGKLT---GYTSTDWVKVNDQLIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKSIVFRA- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHNKQQVTI 293
           L + S  II  D++Y KE   +   A   V     Q     +L K    C + +   V +
Sbjct: 293 LGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYACIVEDGNFVWV 352

Query: 294 SVEGKDFDFLFPL---P------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP- 343
               K    + P+   P       +  + NA++A  L   +GI   ++ + L      P 
Sbjct: 353 EANSK--KVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKALRSYSNDPK 410

Query: 344 ---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
              GR      +++     +DYAH    +E +L  ++     G+  ++ G  GDR
Sbjct: 411 VNRGRANVFEWDNKVA--ILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGDR 463


>gi|295397238|ref|ZP_06807336.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
 gi|294974519|gb|EFG50248.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
          Length = 447

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 74/193 (38%), Gaps = 30/193 (15%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN+  DH DY++     F A      ++  K    I Y  DAY ++    A  +   V 
Sbjct: 171 FTNIDFDHPDYYENIDQVFAANTTFAHQVKKK---VIAYGGDAYLRQF---ADQSDIDVW 224

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVA 318
             G +G   H+           V ++ +G  FD          F  P  GE  V NAL  
Sbjct: 225 YYGLEGGDNHIVA-------SNVDLATDGSHFDVHVMGEFYGHFDIPTFGEHNVMNALSV 277

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI 376
            G C      +  V E L     V  RF    +  + G + +  DYAH  + ++  +   
Sbjct: 278 IGFCYLENFPADRVAEELRTFGGVKRRF----SEKKIGDMTLIDDYAHHPSEIKATINAA 333

Query: 377 R-TITSGRIIVVF 388
           R    + +I+ VF
Sbjct: 334 RQKYPNKKIVSVF 346


>gi|228922665|ref|ZP_04085965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837094|gb|EEM82435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G ++L S   + +     K  A++ K +  + V          LPG
Sbjct: 227 A---DVMALSAYSKGQKILFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G  +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|208779766|ref|ZP_03247110.1| Mur ligase family, glutamate ligase domain protein [Francisella
           novicida FTG]
 gi|208744221|gb|EDZ90521.1| Mur ligase family, glutamate ligase domain protein [Francisella
           novicida FTG]
          Length = 561

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 118/295 (40%), Gaps = 28/295 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTVRLTDYICRVAGKLT---GYTSTDWVKVNDQLIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKSIVFRA- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHNKQQVTI 293
           L + S  II  D++Y KE   +   A   V     Q     +L K    C + +   V +
Sbjct: 293 LGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYACIVEDGNFVWV 352

Query: 294 SVEGKDFDFLFPL---P------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP- 343
               K    + P+   P       +  + NA++A  L   +GI   ++ + L      P 
Sbjct: 353 EANSK--KVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKALRSYSNDPK 410

Query: 344 ---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
              GR      +++     +DYAH    +E +L  ++     G+  ++ G  GDR
Sbjct: 411 VNRGRANVFEWDNKVA--ILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGDR 463


>gi|254373067|ref|ZP_04988556.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570794|gb|EDN36448.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 561

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 118/295 (40%), Gaps = 28/295 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTVRLTDYICRVAGKLT---GYTSTDWVKVNDELIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKSIVFRA- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHNKQQVTI 293
           L + S  II  D++Y KE   +   A   V     Q     +L K    C + +   V +
Sbjct: 293 LGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYACIVEDGNFVWV 352

Query: 294 SVEGKDFDFLFPL---P------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP- 343
               K    + P+   P       +  + NA++A  L   +GI   ++ + L      P 
Sbjct: 353 EANSK--KVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKALRSYSNDPK 410

Query: 344 ---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
              GR      +++     +DYAH    +E +L  ++     G+  ++ G  GDR
Sbjct: 411 VNRGRANVFEWDNKVA--ILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGDR 463


>gi|119026121|ref|YP_909966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|226711884|sp|A1A2F1|MURD_BIFAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118765705|dbj|BAF39884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 479

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 30/163 (18%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           S   GK P   + +TGT+GK+S      ++    GL++  +G                  
Sbjct: 96  SNTTGK-PAQWIGITGTNGKTSTTEMTSEMLTACGLAAPAVG------------------ 136

Query: 167 PIYLAKALSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
              + KA+S+ +      V  VE SS  L  H    ++L   + TN+  DH+D+H   + 
Sbjct: 137 --NIGKAVSHAAVDPANDVLCVELSSFQL--HFTYSLELDCAAITNIADDHLDWHGGIEN 192

Query: 226 YFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAG-CR 266
           Y   K ++F  +      A++Y ADD    ++   A  A  CR
Sbjct: 193 YAADKAKVFHNV----KKALVYNADDERVTKLAFAAQTAPECR 231


>gi|124266216|ref|YP_001020220.1| cyanophycin synthetase [Methylibium petroleiphilum PM1]
 gi|124258991|gb|ABM93985.1| cyanphycin synthetase [Methylibium petroleiphilum PM1]
          Length = 855

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 125/318 (39%), Gaps = 45/318 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF     G+ P  ++AVTGT+GK++ A  +  +   SGL   ++G T+T   + +  ++ 
Sbjct: 460 LFGHGDDGRIP--VVAVTGTNGKTTTARLIAHLFATSGL---RVGMTNTDGVYVEGRQID 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DYH 220
           +        A + L    V     E +  G+ +  L   +      TN+G  DH+  +Y 
Sbjct: 515 SGDCSGPKSARNVLMHPDVDAAVFETARGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYI 574

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T +     K R+  + + +   A++ A D     V   A    C    + +     H  
Sbjct: 575 TTVEDLAVLK-RVIVQNVAQSGYAVLNATD-----VNVAAMAGTCPGDVIFFAADRHH-- 626

Query: 281 KVCAIHNKQ-QVTISVEGKDFDFLFPLPGE-------------------FQVYNALVAAG 320
            V A H  Q + T+ VEG   D L    G                    FQV NA+ A  
Sbjct: 627 PVMATHRAQGKRTVYVEG---DALVAAQGAWREKLLLRDIPLTRGGTIGFQVENAMAAVA 683

Query: 321 LCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               +G+D   V   L          PGRF  +  + +G  +  DY H  +++  ++  +
Sbjct: 684 AAWGVGLDWDTVRRGLASFVNDADNAPGRFNVM--DFKGATVIADYGHNPDAMRALVAAV 741

Query: 377 RTITSGRIIVVFGCGGDR 394
             + + R  VV    GDR
Sbjct: 742 DAMPATRRAVVISGAGDR 759


>gi|300309679|ref|YP_003773771.1| UDP-N-acetylmuramate-L-alanine ligase [Herbaspirillum seropedicae
           SmR1]
 gi|300072464|gb|ADJ61863.1| UDP-N-acetylmuramate-L-alanine ligase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 475

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 116/290 (40%), Gaps = 39/290 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA+AIV S+A         ++ + P ++    +    +  + + G+    +  +A+ GT
Sbjct: 63  EGADAIVTSTA---------VKGDNPEVLAARKKHIPIVPRAVMLGELMRLKKGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +  + GL  +F IG    ++S   + +L T   I      S  S   +
Sbjct: 114 HGKTTTTSLVASVLAQGGLDPTFVIG--GRLTSAGANAKLGTGEFIVAEADESDASFLNL 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T V                I++I    TN+  DH++ +    A        F + LP   
Sbjct: 172 TPV----------------IEVI----TNIDADHMETYNHDFARLKQAFVEFTQRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDF 300
            A++  DD + +E+M         +L+ G+ +   +      A+  K + T+  +G    
Sbjct: 212 VAVLCLDDPHVREIMPMVSKP---ILTYGFHEDADVRAIDAKAVDGKMEFTVIQDGYAPM 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                 PG   V NA  A  +   + +D A   + L + + V  RF   G
Sbjct: 269 QVSLNQPGMHNVQNACAAIAIARELDVDDAATQKALTEFNGVGRRFTRYG 318


>gi|260596516|ref|YP_003209087.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
 gi|260215693|emb|CBA28032.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
          Length = 488

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 106/277 (38%), Gaps = 48/277 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V  I   +GL  +F  G    + +     RL   S   +A+A   
Sbjct: 122 IAVAGTHGKTTTTAMVSSIYAEAGLDPTFVNG--GLVKAAGTHARLGN-SRYLIAEADES 178

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F NL +  I++      Y  A M 
Sbjct: 179 DASFLHLQPMVAIVTNIEADHMDTYH--------GDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  ELLP+    I      +S++   R  N        G QG F  +++     +K
Sbjct: 231 VDDPVIRELLPRVGRQITTY--GFSEDADVRVEN----YRQTGAQGHFTLVRQ-----DK 279

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++ +++           PG     NA  A  +    GI+   +L  LE       RF+F
Sbjct: 280 PELRVTLNA---------PGRHNALNAAAAVSVATEEGIEDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGRIYV--DYAHTSNSLEMILKNIR 377
           +G       N + G   +  DY H    ++  ++  R
Sbjct: 331 LGEFPLANVNGKSGTAMLVDDYGHHPTEVDATVRAAR 367


>gi|255068197|ref|ZP_05320052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
 gi|255047539|gb|EET43003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
          Length = 455

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    P     + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQTLNLPTPSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D +A   +    L VD+T   L   A    G     +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCAALDGA----LKVDDTLAALQTLAKAWRGNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQ 138
             + +
Sbjct: 120 AAVLR 124


>gi|83592288|ref|YP_426040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodospirillum rubrum ATCC 11170]
 gi|118595685|sp|Q2RVU2|MURD_RHORT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83575202|gb|ABC21753.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 477

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 40/242 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY- 176
           L +TGT+GKS+  + +  I  ++     Q+G             L TP       ALS+ 
Sbjct: 121 LGITGTNGKSTTTALIGHIL-KAARHPVQVG-----------GNLGTP-------ALSFE 161

Query: 177 -LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L   G T+V +E SS+ L+   +  +        N+  DH+  H     Y  AK ++F 
Sbjct: 162 PLPFHG-TYV-LELSSYQLEL--VPSLCCDVAVLLNITPDHLARHGGMDGYIAAKRQIFR 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVT 292
              P+   A++  DD  S  +    H+A CR      V    + +    V A+    Q+ 
Sbjct: 218 -CGPRPGVAVVCIDDEPSLAI----HDALCRENGRKVVAVSTRALPRGGVGAVDG--QLV 270

Query: 293 ISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            + +G+     D   +  LPG     NA  A   C   GID+ +++E +     +P R E
Sbjct: 271 DATQGRPRAVADLTTIATLPGAHNWQNAAAAYAACRQHGIDAKIIVEAMASFPGLPHRQE 330

Query: 348 FV 349
            V
Sbjct: 331 LV 332


>gi|229192082|ref|ZP_04319051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
 gi|228591408|gb|EEK49258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 18/179 (10%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G++L      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A   +VM   A++ G ++L S   + +     K  A++ K +  + V          LPG
Sbjct: 227 A---DVMALSAYSKGQKILFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +  + N L A  +   +G  +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 278 QHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|153214069|ref|ZP_01949203.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
 gi|124115495|gb|EAY34315.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
          Length = 486

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F NL +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHNLPFYGQAILC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  EL+P+ S  +I   ++DDA  +    R +         G QG+F  ++K  A 
Sbjct: 234 IDDPVIRELIPRVSRQVITYGFSDDADVRIENYRQN---------GQQGQFTVVRKGKA- 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        + D    +PG     NA  A  +     I    +L  +        R
Sbjct: 284 -------------NLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRR 330

Query: 346 FEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G  + +   DY H    +++ +K  R      R++++F
Sbjct: 331 FDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 377


>gi|121727433|ref|ZP_01680561.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|147675374|ref|YP_001218037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|262167568|ref|ZP_06035273.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
 gi|121630205|gb|EAX62605.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|146317257|gb|ABQ21796.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|227014431|gb|ACP10641.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae O395]
 gi|262024021|gb|EEY42717.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
          Length = 451

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L+   P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  LF           L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLFKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVSPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|89256192|ref|YP_513554.1| hypothetical protein FTL_0832 [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009773|ref|ZP_02274704.1| hypothetical protein Ftulh_03394 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367520|ref|ZP_04983546.1| hypothetical protein FTHG_00773 [Francisella tularensis subsp.
           holarctica 257]
 gi|89144023|emb|CAJ79271.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253336|gb|EBA52430.1| hypothetical protein FTHG_00773 [Francisella tularensis subsp.
           holarctica 257]
          Length = 561

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 118/295 (40%), Gaps = 28/295 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTVRLTDYICRVAGKLT---GYTSTDWVKVNDQLIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKSIVFRA- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHNKQQVTI 293
           L + S  II  D++Y KE   +   A   V     Q     +L K    C + +   V +
Sbjct: 293 LGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYACIVEDGNFVWV 352

Query: 294 SVEGKDFDFLFPL---P------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP- 343
               K    + P+   P       +  + NA++A  L   +GI   ++ + L      P 
Sbjct: 353 EANSK--KVILPVIEAPLTVRSFAKHNIENAMIAIALSFKLGISFDVIEKALRSYSNDPK 410

Query: 344 ---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDR 394
              GR      +++     +DYAH    +E +L  ++     G+  ++ G  GDR
Sbjct: 411 VNRGRANVFEWDNKVA--ILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGDR 463


>gi|54297251|ref|YP_123620.1| hypothetical protein lpp1296 [Legionella pneumophila str. Paris]
 gi|53751036|emb|CAH12447.1| hypothetical protein lpp1296 [Legionella pneumophila str. Paris]
          Length = 428

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 49/320 (15%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-T 163
           A +L  + P   ++ V GT+GK S  + ++ I  +SG   F++G  ++      + R+  
Sbjct: 36  AQKLNLQRPNCKVITVAGTNGKGSTVTALETIYHQSG---FRVGTYTSPHLLVFNERIRI 92

Query: 164 TPSPIY---LAKALS------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             +PI    L KA S      Y ++     ++  A+     QH LD I L  G    L  
Sbjct: 93  NLAPIQDKDLCKAFSVIEEARYPTNLTYFEMATLAALWYFKQHDLDLIILEVGLGGRLDA 152

Query: 215 DH-----------IDYHQTQQAYFNAKMRL--FEE--LLPKESPAIIYADDAYSKEVMKR 259
            +           ID+    Q +    + L  +E+  +L K  P  IYAD +  K V++ 
Sbjct: 153 TNIVDTDLAIITTIDF--DHQNFLGDTLELIGYEKAGILRKNKP-FIYADLSLPKSVVEV 209

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A   G   LS  Y   + + ++           ++ +GK F+ L     + Q+ +A  A 
Sbjct: 210 AVQLGA--LSYLYGKDYFYQEEA------DHWGVTCQGKPFEQL--TRPKIQLRSAAAAV 259

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             C  +  D  +  E+L+K   L  +PGR +     +    I  D +H   S+ ++   +
Sbjct: 260 MACHLMQNDLPVSYENLKKAMDLTDIPGRLQLQKGKT---DILYDVSHNPQSVRLLADTV 316

Query: 377 RTIT-SGRIIVVFGCGGDRD 395
           + I   G+I  VF    D+D
Sbjct: 317 KKINVKGQIHAVFSALKDKD 336


>gi|88858803|ref|ZP_01133444.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
 gi|88819029|gb|EAR28843.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
          Length = 478

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 39/270 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  +   + L  +F IG    ++S   + +L + S   +A+A   
Sbjct: 116 IAIAGTHGKTTTTSLIASVFAEAELDPTFVIG--GLLNSAGTNAKLGS-SRFLIAEADES 172

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH+D +Q           
Sbjct: 173 DASFLHLQPMVSV-----------------------ITNIEADHMDTYQGDFENMKDTYI 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQ 290
            F   LP    A++  DD   KE++ R    G + L+ G   Q  +     V + +  Q 
Sbjct: 210 EFIHNLPFYGLAVVCCDDEVVKELIPRF---GRKFLTYGQSSQADYRMSDFVQSGNTSQF 266

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V    +G   +    +PG     NA  A  +    GI    ++  L K   +  RFE  G
Sbjct: 267 VVTDKQGHSLNVKLNMPGLHNALNATAAIAVAKDEGIADDAIIRALAKFEGIGRRFEHYG 326

Query: 351 T--NSRGGRIYV-DYAHTSNSLEMILKNIR 377
                RG  + V DY H  + +   +K  R
Sbjct: 327 NFATERGDIMLVDDYGHHPSEVAATIKAAR 356


>gi|212712758|ref|ZP_03320886.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
 gi|212684674|gb|EEB44202.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
          Length = 472

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 130/339 (38%), Gaps = 52/339 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A  +VVS+A S ++          I V+        L   R +G      +AV GT G
Sbjct: 62  ENASVVVVSTAISAENPEIQAAKELRIPVIRRAEMLAELMRYR-HG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I  ++GL                        P ++   L  + S G TH 
Sbjct: 115 KTTTTAMISGIYAQAGL-----------------------DPTFVNGGL--VKSAG-THA 148

Query: 186 SVEASSHGL---DQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            + +S + +   D+     + L  +    TN+  DH+D +Q            F   LP 
Sbjct: 149 RLGSSRYLIAEADESDASFLHLQPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPF 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-K 298
              A++  DD   + ++ +    G  + + G+ +   + + K     N+   TI+ EG  
Sbjct: 209 YGRAVMCIDDPVIRSLLPK---IGRYITTYGFSEDADVRITKYEQKGNQGFFTIAREGMP 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT------N 352
           +   +   PG     NA  A  +    GID   +L  L +      RF+F+G       N
Sbjct: 266 ELTVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNYALRNVN 325

Query: 353 SRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            + G + +  DY H    ++  +K  R      RI++VF
Sbjct: 326 GKEGDVMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVF 364


>gi|154488894|ref|ZP_02029743.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
 gi|154083031|gb|EDN82076.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
          Length = 479

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 30/163 (18%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           S   GK P   + +TGT+GK+S      ++    GL++  +G                  
Sbjct: 96  SNTTGK-PAQWIGITGTNGKTSTTEMTSEMLTACGLAAPAVG------------------ 136

Query: 167 PIYLAKALSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
              + KA+S+ +      V  VE SS  L  H    ++L   + TN+  DH+D+H   + 
Sbjct: 137 --NIGKAVSHAAVDPANDVLCVELSSFQL--HFTYSLELDCAAITNIADDHLDWHGGIEN 192

Query: 226 YFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAG-CR 266
           Y   K ++F  +      A++Y ADD    ++   A  A  CR
Sbjct: 193 YAADKAKVFHNV----KKALVYNADDERVTKLAFAAQTAPECR 231


>gi|254238926|ref|ZP_04932249.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|126170857|gb|EAZ56368.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
          Length = 480

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 120/325 (36%), Gaps = 50/325 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 72  ADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  +    GL      PT     F    RL          A  YL ++    
Sbjct: 125 GKTTTTSLISSVFAAGGLD-----PT-----FVIGGRLNAAGTNAQLGASRYLVAE---- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
            + E+ +  L       ++ +    TN+  DH+    T    FN   + F E    LP  
Sbjct: 171 -ADESDASFLH------LQPMVAVVTNIDADHM---ATYGGDFNKLKKTFVEFLHNLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISV 295
             A++  DD   +E++ +         +V Y         V AI+ +Q+        +  
Sbjct: 221 GLAVMCVDDPVVREILPQIARP-----TVTY--GLSEDADVRAINIRQEGMRTWFTVLRP 273

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354
           E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G     
Sbjct: 274 EREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQVE 333

Query: 355 GGRIYV--DYAHTSNSLEMILKNIR 377
           GG + +  DY H    +  ++K IR
Sbjct: 334 GGSVMLVDDYGHHPREVAAVIKAIR 358


>gi|5834372|gb|AAD53938.1|AF179611_22 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 269

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 28/147 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TGT+GKS+  + +  I + +GL +   G                  P+  A  L  
Sbjct: 124 VVGITGTNGKSTTTALIHHILKEAGLPTLMGGNIGL--------------PLLAADPLP- 168

Query: 177 LSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               G  +V +E SS+ +D    LD    +    TN+  DH+D H   + Y  AK RLF 
Sbjct: 169 ---DGGVYV-LELSSYQIDLTFTLDCDIAV---LTNITPDHLDRHGGFEGYRKAKERLF- 220

Query: 236 ELLPKESP--AIIYADDAYSKEVMKRA 260
             L + SP  A+I  DD  S+ + K++
Sbjct: 221 --LLQSSPHYAVIATDDIPSQVIAKQS 245


>gi|187918447|ref|YP_001884010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia hermsii
           DAH]
 gi|119861295|gb|AAX17090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia hermsii
           DAH]
          Length = 451

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ ++P  I+A+TGT GKS++AS + ++      +S ++G    IS  +  + 
Sbjct: 102 ISLFL--MFNQNP--IIAITGTKGKSTLASLLHKVLVAKYPNS-KLGGNIGISPLSFLDE 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SPI L                 E SS  L  H L+ +  I    TN+  DH +Y+ 
Sbjct: 157 LDGTSPIVL-----------------ELSSWQL--HDLENLCPIISIITNIYCDHQNYYS 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +Y   K ++F   + + S  +I  D AY     K
Sbjct: 198 NFDSYIADKSKIF---INQNSGILISQDQAYYNYFYK 231


>gi|123965256|ref|YP_001010337.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123199622|gb|ABM71230.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 469

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYA 363
           P+PG   + N   A   C  IG+    + ++++ L +   RFEF G  N R    Y DYA
Sbjct: 278 PIPGLHNLSNITAAIAACRMIGVSFKEIKKNIKSLELPKKRFEFRGELNQR--VFYDDYA 335

Query: 364 HTSNSLE---------MILKNIRTITSGRIIVVF 388
           H  N ++         +I  NI     GR+I +F
Sbjct: 336 HHPNEIKATIDLARLFIIDNNINKNQKGRLIAIF 369


>gi|261211959|ref|ZP_05926245.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           RC341]
 gi|260838567|gb|EEX65218.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           RC341]
          Length = 421

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL+A G C  + I    ++E L    +  GR + +   SR   I +D A
Sbjct: 254 LPLP---NAATALMALG-CSGLEISDLDIVEGLRNAQLA-GRMQLI---SREPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  +S   ++  ++     + I +V G   D+D      +    ++L    +VT   P S
Sbjct: 306 HNPHSAHYLVDQLKQRYPQQTIHLVLGMLQDKD------IASTVMELN--PVVTHWYPAS 357

Query: 423 -EDPEKIRAE-IIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
              P    AE +   +P G I+  N + A   A+   + QDV+VVAG  H    ++ + +
Sbjct: 358 LSGPRAATAEQLCQYLPVGNIQYANPVAAFEAALTQASAQDVIVVAGSFHTVGEVLEHWQ 417

Query: 480 KK 481
           K+
Sbjct: 418 KR 419


>gi|163868712|ref|YP_001609924.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella tribocorum CIP
           105476]
 gi|189028974|sp|A9IWA4|MURC_BART1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161018371|emb|CAK01929.1| UDP-N-acetylmuramate--alanine ligase [Bartonella tribocorum CIP
           105476]
          Length = 475

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+D++ +  A   A  R F E +P    A++  D    + +  R  +       
Sbjct: 181 TNIDAEHLDHYGSFDAVRTA-FRQFVENVPFYGFAVLCVDHPEVQSLAGRIDDRWVITYG 239

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R L++   G+  H   +      ++    +E K+   L P+ G+  V NA  A
Sbjct: 240 ANPQADVRFLNLSRDGQKTHFDVLV---RSRKTGRKIELKNL--LLPMAGQHNVANATAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +GI + L+ + L +   V  RF   G+  RG  I+ DY H    ++ +L+  R 
Sbjct: 295 IAIAHELGISNELIKKGLAEFGGVKRRFTRTGS-WRGIEIFDDYGHHPVEIKAVLRAARE 353

Query: 379 ITSGRIIVV 387
              GR+I +
Sbjct: 354 SAKGRVIAI 362


>gi|86749119|ref|YP_485615.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
 gi|109892730|sp|Q2IYK6|MURC_RHOP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86572147|gb|ABD06704.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
          Length = 468

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 134/342 (39%), Gaps = 66/342 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GADVLVVSTA---------IKRDNPELLAARAQRIPVVRRAEMLAELMRLKSCVAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S V  +     L +    PT      I+++  + RL     +            
Sbjct: 117 GKTTTTSMVAAL-----LDAGDFDPTVINGGIINAYGTNARLGAGDWMV----------- 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 VEA     D+     +KL A     TN+  +H+D+ +T  A  +A  R F E +
Sbjct: 161 ------VEA-----DESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENV 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTIS 294
           P    A++  D    + ++ +  +   R+++ G       + + LK      +    T  
Sbjct: 209 PFYGFAVMCIDHPVVQALVGKIEDR--RIITYGENPQADARLLELKP-----SGSGSTFK 261

Query: 295 VEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           V  +D          + + P+PG     NA  A  +   +G+    + + L     V  R
Sbjct: 262 VAFRDRKAGTAHEIAELMLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRR 321

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           F   G +  G  I  DY H    +  +LK  R  T GR+I V
Sbjct: 322 FTKTG-DWNGVTIIDDYGHHPVEIAAVLKAARQSTDGRVIAV 362


>gi|227327093|ref|ZP_03831117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 29/155 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A    L  P+ +Y+ +  S+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIGLPAL-QLLEQPAQLYVLELSSF 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S+ A+               A +  N+  DH + Y    Q Y  AK+R++E
Sbjct: 163 ---QLETTSSLHAA---------------AATILNVTEDHTNRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                    ++ ADDA +  V  R  +A CR   V
Sbjct: 205 H----ADLCVVNADDALTMPV--RGADARCRSFGV 233


>gi|115314665|ref|YP_763388.1| tetrahydrofolylpolyglutamate synthase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502248|ref|YP_001428313.1| UDP-N-acetylmuramyl tripeptide synthase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|254369190|ref|ZP_04985202.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290954333|ref|ZP_06558954.1| UDP-N-acetylmuramyl tripeptide synthase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312241|ref|ZP_06803039.1| UDP-N-acetylmuramyl tripeptide synthase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|115129564|gb|ABI82751.1| possible tetrahydrofolylpolyglutamate synthase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156252851|gb|ABU61357.1| UDP-N-acetylmuramyl tripeptide synthase with glutame ligase domain
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122140|gb|EDO66280.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 561

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 118/295 (40%), Gaps = 28/295 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTVRLTDYICRVAGKLT---GYTSTDWVKVNDQLIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKSIVFRA- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHNKQQVTI 293
           L + S  II  D++Y KE   +   A   V     Q     +L K    C + +   V +
Sbjct: 293 LGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYACIVEDGNFVWV 352

Query: 294 SVEGKDFDFLFPL---P------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP- 343
               K    + P+   P       +  + NA++A  L   +GI   ++ + L      P 
Sbjct: 353 EANSK--KVILPVIEAPLTVRSFAKHNIENAMIAIALSFKLGISFDVIEKALRSYSNDPK 410

Query: 344 ---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
              GR      +++     +DYAH    +E +L  ++     G+  ++ G  GDR
Sbjct: 411 VNRGRANVFEWDNKVA--ILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGDR 463


>gi|283783550|ref|YP_003374304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
 gi|283441283|gb|ADB13749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
          Length = 533

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 35/159 (22%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +    GL++  +G                     + K+
Sbjct: 123 PAYWIGITGTNGKTSTTEMTSAMLTACGLNAPAVG--------------------NIGKS 162

Query: 174 LSYLSSQGVTH--VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +S+ + +   H  + VE SS  L  H  D + L   + TN+  DH+D+H   ++Y   K 
Sbjct: 163 VSHAALE-CEHDALCVELSSFQL--HFTDSLALDCAAITNIAADHLDWHGGMESYARDKS 219

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCR 266
           ++F  +      A++Y  +A  + V K A  A    GC+
Sbjct: 220 KVFNNV----QKALVY--NAQDERVSKLADCAQVADGCK 252


>gi|226226830|ref|YP_002760936.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090021|dbj|BAH38466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 474

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 14/130 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           Y  F  +   L   P     + +  +S+D+R I  G +FVA+ G++ D H F+  A   G
Sbjct: 25  YWTFERVAAALGTGPSM--PQPLAGISTDTRRIARGDVFVALRGDRFDAHDFLATAKDAG 82

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTS 124
           A A VVS      D +  +    P  VV +T   L   A     ++G+H   ++AV G++
Sbjct: 83  AAAFVVS------DATRAVGLGVPTYVVPDTLIALGQLAHTWRTVWGRH---VIAVAGSN 133

Query: 125 GKSSVASFVQ 134
           GK+S    ++
Sbjct: 134 GKTSTKELLK 143


>gi|126741293|ref|ZP_01756971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
 gi|126717611|gb|EBA14335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
          Length = 465

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 116/306 (37%), Gaps = 40/306 (13%)

Query: 101 FLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           F + FA + +     P  ++A+TG++GKS+  + +  I +        +G  S ++    
Sbjct: 104 FFASFAHQGWDMMDQPPKVVAITGSNGKSTTVALLHHILE-------SVGRDSQMAGNIG 156

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              L    P          +  GV  V +E SS+  +  R   +       TNL  DH++
Sbjct: 157 RGVLDIDPP----------ADGGV--VVLELSSYQTELAR--ALTPDVAILTNLSEDHLE 202

Query: 219 YHQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            H     YF AK RLF E  P        E   +  A       V  R      +    G
Sbjct: 203 RHAGLGGYFAAKRRLFAEGGPDRAIIGIDEDEGLFLAGQLSQAAVDDRVIRISAKKKLTG 262

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +    K   + + K +   S+   D   +  LPGE    NA  A      +G+   +
Sbjct: 263 PGWQIFARKGFLSEYRKGRQVASI---DLRQMTGLPGEHNHQNACAAYAAARVLGLAPRV 319

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + L+    +P R + +   +  G  YV+ +  +N L+  +K +      R I    CG
Sbjct: 320 IEQALDSYPGLPHRSQTIAEAA--GVRYVNDSKATN-LDSAIKALSAFPKIRWI----CG 372

Query: 392 GDRDQG 397
           G   +G
Sbjct: 373 GLEKEG 378


>gi|89095258|ref|ZP_01168179.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
 gi|89080465|gb|EAR59716.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
          Length = 482

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 103/270 (38%), Gaps = 38/270 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S +  I      +  ++ PT     F    RL +           YL
Sbjct: 121 IAVAGTHGKTTTTSLLASI-----FAEGELDPT-----FVIGGRLNSAGTNAKMGTSRYL 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++     + E+ +  L    +  I       TN+  DH++ ++   +        F   
Sbjct: 171 VAE-----ADESDASFLHLQPMVAI------VTNIDADHMETYENDFSRLKKTFVEFLHN 219

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQV 291
           LP    A++  DD    E++         VL+ G      Y+ + I  + +C     ++ 
Sbjct: 220 LPFYGLAVMCVDDPVVCEILPEISRP---VLTYGVSEDADYRAENIRQEGMCTRFTVKRP 276

Query: 292 TISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               EG  D D    +PG   + NAL    +    GI    +   LEK   V  RF+ +G
Sbjct: 277 ----EGFADLDVSLNMPGHHNMLNALATIAVASDEGISDEAICSALEKFEGVGRRFQVLG 332

Query: 351 TNS--RGGRIYV-DYAHTSNSLEMILKNIR 377
             S   G  + V DY H    +  ++K IR
Sbjct: 333 DVSVTDGTAMLVDDYGHHPREVNAVVKAIR 362


>gi|121587635|ref|ZP_01677399.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|153818410|ref|ZP_01971077.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|20532180|sp|Q9KPG8|MURC_VIBCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121548145|gb|EAX58218.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|126511043|gb|EAZ73637.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|327484896|gb|AEA79303.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae LMA3894-4]
          Length = 486

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F NL +  ID+             
Sbjct: 182 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------- 223

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q 
Sbjct: 224 -----LPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQF 275

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G
Sbjct: 276 TVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLG 335

Query: 351 TNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               G  + +   DY H    +++ +K  R      R++++F
Sbjct: 336 EFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 377


>gi|154252864|ref|YP_001413688.1| UDP-N-acetylmuramate--L-alanine ligase [Parvibaculum
           lavamentivorans DS-1]
 gi|171769613|sp|A7HVU8|MURC_PARL1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154156814|gb|ABS64031.1| UDP-N-acetylmuramate--alanine ligase [Parvibaculum lavamentivorans
           DS-1]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+DY+ +  A  +A +  F E +P    A++  D    + ++ R  +       
Sbjct: 182 TNIDPEHLDYYGSFDAAKDAFL-AFVENVPFYGAAVMCIDHPEVQALIGRVRDRRIVTYG 240

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R  +   +  F ++  V     K      + G        + G   + N+L A
Sbjct: 241 TNPQADIRATNARVEDGF-NVFDVAITDRKTGTAREMTG----VRLAMHGTHNMLNSLAA 295

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+   +GI    +   LE    V  RF FVG+ +    IY DY H    +  +L+  R+
Sbjct: 296 IGVATQMGIADDKIRAALEGFGGVKRRFTFVGSWN-DVNIYDDYGHHPVEIAAVLQAARS 354

Query: 379 ITSGRIIVV 387
            T GR I V
Sbjct: 355 ATKGRTIAV 363


>gi|119487890|ref|ZP_01621387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
 gi|119455466|gb|EAW36604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 21/179 (11%)

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + V  V  E SS+ ++       K+  G +T    DH++ H T + Y+N K +    LL 
Sbjct: 160 KSVDWVIAEVSSYQIESSSTLAPKI--GVWTTFTPDHLNRHHTLENYYNIKAK----LLK 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-------HLKKVCAIHNKQQVT 292
                +I  DD Y ++   +     C   SV  + K I       +++    I N+Q++ 
Sbjct: 214 NSEIQVINGDDPYLRQNADQEWKNACWT-SVQGKSKLIGNPDLGVYIENDYIIQNQQKI- 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +  K    +    G+  + N L+A       GI+   + + +     VP R E VG+
Sbjct: 272 --IPLKTLKMV----GKHNLQNLLMAVATARLAGIEPPAIEQAISNFPGVPHRLEAVGS 324


>gi|189464537|ref|ZP_03013322.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
 gi|189438327|gb|EDV07312.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
          Length = 444

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 106/267 (39%), Gaps = 30/267 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +GL+   +G    I                 + AL  
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGK---------------SLALQV 145

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
            + Q   +V +E SS  LD   +   +       N+  DH+D Y    Q Y +AK R+ +
Sbjct: 146 ATDQHDYYV-IELSSFQLDN--MYKFRANIAVLMNITPDHLDRYDHCMQNYVDAKFRITQ 202

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              P E   I + DD    +E+ K    A     S   +   I   +   +   + +  +
Sbjct: 203 NQTP-EDAFIFWNDDPIIKRELDKHGLRAHLYPFSAVKEDGAIAYVEDGEVEINEPIAFN 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E +       L G   +YN+L A       GI+   +   L     V  R E V T  R
Sbjct: 262 MEQEK----LALQGTHNLYNSLAAGISANLAGIEKEYIRRALSDFKGVEHRLEKVAT-VR 316

Query: 355 GGRIYVDYAHTS-NSLEMILKNIRTIT 380
           G     D   T+ NS    L++++T T
Sbjct: 317 GVEFINDSKATNVNSCWYALQSMKTKT 343


>gi|107100004|ref|ZP_01363922.1| hypothetical protein PaerPA_01001025 [Pseudomonas aeruginosa PACS2]
 gi|296391120|ref|ZP_06880595.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAb1]
          Length = 469

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 120/325 (36%), Gaps = 50/325 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 61  ADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  +    GL      PT     F    RL          A  YL ++    
Sbjct: 114 GKTTTTSLIASVFAAGGLD-----PT-----FVIGGRLNAAGTNAQLGASRYLVAE---- 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
            + E+ +  L       ++ +    TN+  DH+    T    FN   + F E    LP  
Sbjct: 160 -ADESDASFLH------LQPMVAVVTNIDADHM---ATYGGDFNKLKKTFVEFLHNLPFY 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISV 295
             A++  DD   +E++ +         +V Y         V AI+ +Q+        +  
Sbjct: 210 GLAVMCVDDPVVREILPQIARP-----TVTY--GLSEDADVRAINIRQEGMRTWFTVLRP 262

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354
           E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G     
Sbjct: 263 EREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQVE 322

Query: 355 GGRIYV--DYAHTSNSLEMILKNIR 377
           GG + +  DY H    +  ++K IR
Sbjct: 323 GGSVMLVDDYGHHPREVAAVIKAIR 347


>gi|322392711|ref|ZP_08066171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
 gi|321144703|gb|EFX40104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
          Length = 455

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +++F     +  +N+   DSR I  G +FV + G + DGH FI  A   GA A+ +S 
Sbjct: 16  NDVTVF----LDDSLNKAEFDSRLIAEGDLFVPLKGAR-DGHDFIETAFENGA-ALTLSE 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                       ++ P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 70  KEV---------ASHPYILVDDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTKDMLAH 120

Query: 136 IC 137
           + 
Sbjct: 121 LL 122


>gi|88802248|ref|ZP_01117775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
 gi|88781106|gb|EAR12284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
          Length = 418

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 33/227 (14%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPIL 93
           +D+R I+   +F A+ G   +G+ F  +A+AQGA  +I+  +AY          +    +
Sbjct: 18  TDTRSIRKNTVFFALKGANFNGNAFAAEALAQGASLSIIDDAAY---------FTGPKTI 68

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +VDN  + L   A     +    +LA+TG++GK++    +  +  +      +   T+T 
Sbjct: 69  LVDNVLETLQALARYHRKQLKIPVLALTGSNGKTTTKELISAVLSK------KYRTTATH 122

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA----GS 208
            +   +N +  P        L+ LS    T +  VE  ++   Q  +  +  +A    G 
Sbjct: 123 GNL--NNHIGVP--------LTLLSMTPKTEIGIVEMGAN--HQKEIAFLCSLAAPDYGY 170

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            TN G+ H++     +     K  L+  L   +  A I   DA  KE
Sbjct: 171 ITNFGKAHLEGFGGMEGVVMGKSELYTFLHTHQKTAFINPKDALQKE 217


>gi|121728371|ref|ZP_01681400.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|147675354|ref|YP_001217902.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O395]
 gi|172047586|sp|A5F5M8|MURC_VIBC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121629362|gb|EAX61793.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|146317237|gb|ABQ21776.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 486

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F NL +  ID+             
Sbjct: 182 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------- 223

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q 
Sbjct: 224 -----LPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQF 275

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G
Sbjct: 276 TVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLG 335

Query: 351 TNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               G  + +   DY H    +++ +K  R      R++++F
Sbjct: 336 EFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 377


>gi|148242946|ref|YP_001228103.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RCC307]
 gi|147851256|emb|CAK28750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RCC307]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 17/119 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK++V S V  + Q+ GL +   G    I + A +             AL+ L
Sbjct: 114 IGITGTNGKTTVTSLVAHLLQQGGLDAPACG---NIGASAAE------------LALACL 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             +    V VE SS+ ++      ++   G +T L  DH+D H T + Y + K  L ++
Sbjct: 159 EGEKPERVVVELSSYQIEAA--PSVQPSIGVWTTLTPDHLDRHGTLERYRSIKAGLLQQ 215


>gi|302380550|ref|ZP_07269015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311493|gb|EFK93509.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 138/359 (38%), Gaps = 50/359 (13%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G+   AI  N ++    I   +    E+I     Y +   S  IR + P+++  N     
Sbjct: 24  GYDLGAIDDNIDEEKTKILNELDVQIESIDTIDKYDIILKSPGIRMDNPVILKANELNIE 83

Query: 103 SL----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            +     A R++G     I+A+TGT+GK++  S + ++   SG  +  IG          
Sbjct: 84  VVSDLELAQRIFGDIK--IVAITGTNGKTTTTSLMTKMLNDSGRKAISIG---------- 131

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                    I +       +S   T+  +E SS  L+  +    K       N+  DHID
Sbjct: 132 --------NIGVGMLWEIYNSDKDTYFVIECSSFQLESTK--NFKPQYSCIINITPDHID 181

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGK 275
           +H + Q Y NAK  + +    +    ++ ADD Y +E  K+   A    +S      +G 
Sbjct: 182 WHGSMQNYVNAKKNVLKN-QDENCYTVLNADDEYYEEC-KKFTKANVYDISTSKNVKRGS 239

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-----GEFQVYNALVAAGLCIAIGIDSA 330
           FI           +  +I     D D +  L      G     N L    L   IGI+  
Sbjct: 240 FI-----------KDNSIYFSDSDCDKIIDLKNVNLIGYHNYQNVLFCVTLAKLIGINDD 288

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            + E L     V  R EFV   S G + Y D   T  +++  +K I +     II+  G
Sbjct: 289 SIRETLMSFSGVEHRLEFVRDLS-GVKYYNDSKGT--NVDASVKAIESFDKNVIILAGG 344


>gi|254450302|ref|ZP_05063739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
 gi|198264708|gb|EDY88978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
          Length = 465

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 29/137 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSS---FQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           ++AVTG++GKS+ ++ +  I + +G  +     IG        A D  +           
Sbjct: 122 VIAVTGSNGKSTTSALIHHILEHAGRPAQLAGNIGRGVLDLDEAHDGEV----------- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + +E SS+  D  R   +      FTNL  DH+D H     YF AK RL
Sbjct: 171 -----------IVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHAGLGGYFAAKRRL 217

Query: 234 FEELLPKESPAIIYADD 250
           F E  P    A+I  D+
Sbjct: 218 FAEGGPDR--AVIGVDE 232


>gi|167037933|ref|YP_001665511.1| FolC bifunctional protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116348|ref|YP_004186507.1| FolC bifunctional protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856767|gb|ABY95175.1| FolC bifunctional protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929439|gb|ADV80124.1| FolC bifunctional protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 427

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 92/443 (20%), Positives = 163/443 (36%), Gaps = 123/443 (27%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L ++N R+ LS      Y  +P+    I+ V GT+GK S ++F+  I Q++G     +  
Sbjct: 20  LGLENIRRLLS------YMGNPQKNLKIIHVAGTNGKGSTSAFISNILQQAGYK-VALYT 72

Query: 150 TSTISSFAQDNRLT-------------------------------TPSPIYLAKALSYLS 178
           +  +  F +  R+                                T   +  A A  Y  
Sbjct: 73  SPYLEEFEERMRINGENISKEKLIYYVEYIKPIISKMVKEGYNHPTEFEVITAIAFKYFY 132

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-- 236
            + V  V +E    G    R D    I  S  ++    IDY  T +         +E+  
Sbjct: 133 DEKVDFVVLEVGLGG----RFDATNAIDSSLVSVITT-IDYDHTDRLGHTLGEIAYEKAG 187

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           ++ ++   + +     + +V+  A    C V +               +  K  V I  +
Sbjct: 188 IIKQKGVVVSFYQQPEAMKVIIEA----CEVRNA-----------YLTVLEKSNVIIKEQ 232

Query: 297 GKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----- 342
             DF         D    L GE Q+YNA              AL +E +EKL +      
Sbjct: 233 NPDFQIFDYKKYKDLKITLLGEHQIYNA--------------ALAVESVEKLRMYGYEVT 278

Query: 343 -------------PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
                        PGR E +    +   + +D AH    + ++ ++++     ++I+V G
Sbjct: 279 EKDIKEGLYRAKWPGRLEVM---RKKPYVVIDGAHNPQGMTVLKESLKLFKYDKLILVIG 335

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--- 446
              D+D  K   M  I +  AD+ I T   P SE     RA     +   I+K N I   
Sbjct: 336 MLKDKDTQK---MLDIIVPEADMIITT--TPISE-----RAYKASELAQKIDKENVIPIE 385

Query: 447 ---EAIRTAIEMLNKQDVLVVAG 466
              +A++ A+++  ++D+++  G
Sbjct: 386 NIEKAVKYALDIAKEEDMVLFCG 408


>gi|116512399|ref|YP_809615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris SK11]
 gi|122940065|sp|Q02XX9|MURD_LACLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116108053|gb|ABJ73193.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 449

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 38/201 (18%)

Query: 179 SQGVTHVSVEASSH---GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +Q    + +E SS    G+D  R   I LI    TNL   H+DYH +Q+AY  AK R+ E
Sbjct: 158 AQATDTLVMELSSFQLMGIDTFR-PKIALI----TNLFSAHLDYHGSQEAYEAAKWRIQE 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +          ADD     ++   +   CR L+   +        V A   K++V+ + 
Sbjct: 213 NM---------TADDF----LILNFNQEKCRKLADKTKA------TVLAFSTKEKVSGAY 253

Query: 296 --EGKDF---DFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             EGK +   +F+       LPG+  + NAL A       G ++  ++E L     V  R
Sbjct: 254 VNEGKIYFKDEFIMEASELSLPGDHNLENALAAIVASKLRGAENEAIIEVLTSFAGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTS 366
            +++G    G ++Y D   T+
Sbjct: 314 LQYLG-EIDGRKVYNDSKATN 333


>gi|329118766|ref|ZP_08247464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465113|gb|EGF11400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 459

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    P   +   ++ + +DSR I+AG +F A+ G + DGH F    +A GA A VV
Sbjct: 12  FICQALNLPAPAQNLAVSRIVTDSRDIRAGDVFFALDGERFDGHDFAEDVLAAGAAAAVV 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     ++  A +R     L V +T + L   A          +  +TG+ GK++V   +
Sbjct: 72  S-----REDCAGLRG---ALQVADTLEALQTLAQAWRENVNPFVFGITGSGGKTTVKEML 123

Query: 134 QQICQR 139
             + +R
Sbjct: 124 AAVLRR 129


>gi|282899544|ref|ZP_06307508.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195423|gb|EFA70356.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii
           CS-505]
          Length = 860

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S + +   +R  TSG+ I V G  GDR       +GK+A ++ D  IV +D+
Sbjct: 718 VDYAHNPASYQALGSFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDD 777

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNK 458
                P    +++I  I G  +     R E+I    + +NK
Sbjct: 778 DTRGRPRGSGSDLI--IQGITQTKVNCRYESILDETQAINK 816


>gi|240143954|ref|ZP_04742555.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|257203987|gb|EEV02272.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|291539527|emb|CBL12638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis XB6B4]
          Length = 401

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 91/248 (36%), Gaps = 56/248 (22%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++ +TGT GKS+ ++ +  +     L +    P   + +  Q      P   Y  +  
Sbjct: 87  DQVIGITGTKGKSTTSAMLYTV-----LKACSGRPVLLLGNIGQ------PCLDYFEEVT 135

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                   T +  E S H L    +     I   F NL  +H+DY+ T + YF AK  + 
Sbjct: 136 E------DTIIVYEMSCHQLAHTNVSPHIAI---FLNLYEEHLDYYGTVEKYFEAKSHI- 185

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTI 293
                           AY K                   G +  + + V  I  K Q T+
Sbjct: 186 ---------------AAYQK------------------SGDYFFVGENVPQIDTKAQRTV 212

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + K   +   L GE   Y+A     +   +G +   VL+ +     +P R ++VGT  
Sbjct: 213 LHQPKGVHYELKLAGEHNQYDAQFVERVAELLGCEKEAVLKSMADFEGLPHRLQYVGT-Y 271

Query: 354 RGGRIYVD 361
           RG R Y D
Sbjct: 272 RGVRYYDD 279


>gi|291549817|emb|CBL26079.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus torques L2-14]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 117/316 (37%), Gaps = 38/316 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138
           ++A I    P L+    RK   L  + L G+  +N    +AV+GT GK++  S +  I  
Sbjct: 75  YTAAINKANPELMEAVARKIPMLTRAELLGQLMKNYKTPIAVSGTHGKTTTTSMISHI-- 132

Query: 139 RSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              L +  + PT ++    +    N     S  ++ +A  Y +S                
Sbjct: 133 ---LLAADLDPTISVGGILKAIGGNIRVGKSETFITEACEYTNSF--------------- 174

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            H    I +I     N+  DH+D+ +  +         F  LLP +   II  D    +E
Sbjct: 175 LHFYPKISVI----LNIEEDHLDFFKDLED-IRHSFHQFAALLPSDGTLIINGDIDNYQE 229

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFL-FPLPGEFQV 312
           +     +  C V++ G      +         K  V   +   GK  D +   + G+  V
Sbjct: 230 IYD---SLDCNVITYGSSDMLDYSASNITYDEKGLVAFDLIKNGKVVDHIQLSVTGDHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL +      + I    + + +        RFE+ GT   G  +  DYAH    +   
Sbjct: 287 SNALASIATAELLQIPMETIKKGILSFSGTDRRFEYKGT-FNGVTVVDDYAHHPTEIAAT 345

Query: 373 LKNIRTITSGRIIVVF 388
           LK  +     ++  VF
Sbjct: 346 LKAAQHYPHNQVWCVF 361


>gi|259416006|ref|ZP_05739926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
 gi|259347445|gb|EEW59222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
          Length = 463

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 132/354 (37%), Gaps = 44/354 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S D+R +  G +FVA+   + DGH F+ QA+A+GA A +VS           +   
Sbjct: 23  VDGISIDTRTLAPGDLFVALKAAR-DGHDFVAQALAKGAGAALVSH------IPEGVAEG 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-- 147
           +P+LVVD+ +  L         +    ++AVTG+ GK+S    +  +    G +   +  
Sbjct: 76  SPLLVVDDVQAALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLAPQGRTHAAVAS 135

Query: 148 -----GPTSTISSFAQDNRLTTPSPIYLA----KALSYLSSQGVTHVSVEASSHGLDQHR 198
                G   T++    D        I L       ++ LS Q   HV++           
Sbjct: 136 YNNHWGVPLTLARMPADTEFAV---IELGMNHPGEIAPLSRQARPHVAL----------- 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                      T +   H++  +        K  + E L P    A++ AD   +  +  
Sbjct: 182 ----------VTTVAAVHLEAFEDVAGIAREKAAIIEGLEPG-GVAVLNADLDETPVLRA 230

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A  AG      G       LK      +  +  +S+ G+D        G     NA  A
Sbjct: 231 VAEAAGIETRWFGQSADAYRLKDAELDGDITRAHLSLAGRDVTADIQSLGTHFAMNATGA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEM 371
               +A+G D  L L  L     V GR      +   G + V D A+ +N   M
Sbjct: 291 LASVLALGGDLDLALAGLAGWSPVKGRGARFTVDLPSGSVTVLDDAYNANPTSM 344


>gi|254502723|ref|ZP_05114874.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
 gi|222438794|gb|EEE45473.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
          Length = 469

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + + P+PG   V NA  A  +   +G+    + + +     V  RF F G  + G +++ 
Sbjct: 275 NLVLPMPGLHNVSNATAAIAVASQLGVSPQDIEKGISSFGGVKRRFTFTG-EAGGVQVFD 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF 388
           DY H    ++ +L   R  T G++I V 
Sbjct: 334 DYGHHPVEIKAVLHAARESTDGKVIAVM 361


>gi|294791080|ref|ZP_06756238.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
 gi|294458977|gb|EFG27330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 26/139 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   + +TGT+GK+S      +I Q + L++  +G             +  P    +++
Sbjct: 94  QPAAWIGITGTNGKTSTTEMTAEILQAASLAAPAVG------------NIGVP----VSQ 137

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A    ++Q +    VE SS  L  H    ++L A + TNL  DH+D+H   + Y   K R
Sbjct: 138 AAVDENNQALV---VELSSFQL--HYTYSLQLEAAAITNLADDHLDWHGGFENYVADKAR 192

Query: 233 LFEELLPKESPAIIY-ADD 250
           +++ +      A++Y ADD
Sbjct: 193 VYQHV----KKALVYNADD 207


>gi|293610569|ref|ZP_06692869.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826913|gb|EFF85278.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 482

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 8/192 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRV- 246

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  V++ G+ +   I    +     +   T+  +G++        PG   V NAL A 
Sbjct: 247 --GRPVITYGFNEDNDIRAVDIEQDGMQSHFTVLRKGREPLRLTINQPGLHNVLNALAAI 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
           G+    G+    +   LE    V  RF+  G         ++  DY H    +E  +K  
Sbjct: 305 GVATDEGVSDDAISRALEGFSGVGRRFQVQGEFELADGNVKLVDDYGHHPKEVEATIKAA 364

Query: 377 RTITSGRIIVVF 388
           R     R +V+ 
Sbjct: 365 RQSHPDRRLVML 376


>gi|302528471|ref|ZP_07280813.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           AA4]
 gi|302437366|gb|EFL09182.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           AA4]
          Length = 468

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 28/156 (17%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +HP   L +TGT+GK++    ++ I + +G  +   G                  P+  A
Sbjct: 103 EHPPAWLVITGTNGKTTTVGMLESILRAAGADAVACG--------------NVGYPVLDA 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                    G   ++VE SS  L  H    I   A    NL  DH+D+H + + Y  AK 
Sbjct: 149 ------VRGGHQVLAVELSSFQL--HWSSTIAPDASVVLNLAEDHLDWHGSMEEYAAAKG 200

Query: 232 RLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCR 266
           R+      + S A+++  DD +S  + +     G R
Sbjct: 201 RVH-----QRSRAVVHNVDDPWSTRIAEEHAPDGAR 231


>gi|237799292|ref|ZP_04587753.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022148|gb|EGI02205.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 486

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 168/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 219 PFYGLAVMCIDDPVVREILPMVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 275 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 324

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 325 FQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQP--HRFSRTRDL 382

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 383 YDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAP 440

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 441 LVKPLLRAGDILLCQGAG 458


>gi|163856171|ref|YP_001630469.1| cyanophycin synthetase [Bordetella petrii DSM 12804]
 gi|163259899|emb|CAP42200.1| cyanophycin synthetase [Bordetella petrii]
          Length = 946

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRFEFVGTNSRGGRIYVDYAHTSN 367
           FQV N L A G   A+GI  A++   +E   +      ++F      G  + VD  H ++
Sbjct: 762 FQVENVLAAVGTAWALGIPDAIIRAGIEAFDIDQADAPWQFTLFERGGATVVVDDVHNAS 821

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +L+ ++       + R   V+  G DR        G++     D  ++ DD
Sbjct: 822 ALQALIDAAARFPASRRCAVYAAGADRRDADLIEQGRLLAGAFDRVVLYDD 872


>gi|325123865|gb|ADY83388.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 482

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 8/192 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRV- 246

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  V++ G+ +   I    +     +   T+  +G++        PG   V NAL A 
Sbjct: 247 --GRPVITYGFNEDNDIRAVDIEQDGMQSHFTVLRKGREPLRLTINQPGLHNVLNALAAI 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
           G+    G+    +   LE    V  RF+  G         ++  DY H    +E  +K  
Sbjct: 305 GVATDEGVSDDAISRALEGFSGVGRRFQVQGEFELADGNVKLVDDYGHHPKEVEATIKAA 364

Query: 377 RTITSGRIIVVF 388
           R     R +V+ 
Sbjct: 365 RQSHPDRRLVML 376


>gi|325067118|ref|ZP_08125791.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces oris K20]
          Length = 483

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           V +DSR    G +FVA+ G + DGH  +  A   GA   +VS   + +   +  ++  P 
Sbjct: 31  VVTDSRQAAEGSLFVAVHGERTDGHAHLGSAGVLGAVGAIVSDLEAARSGLSLDQAEEPT 90

Query: 92  ---ILVVDNTRKFLSLFASRLYGKHPE--------NILAVTGTSGKSSVASFVQQICQRS 140
              +LV D      +L  + L G             ++A+TG+ GK++     +Q+   S
Sbjct: 91  MGLVLVEDTVVALGALARTHLEGLRQAAAERGERLTVVAMTGSVGKTTTKDLTRQLLAAS 150

Query: 141 G 141
           G
Sbjct: 151 G 151


>gi|307244053|ref|ZP_07526172.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492577|gb|EFM64611.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
          Length = 453

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 48/330 (14%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSV 129
           +S+  ++  ++A I  +   LV    +  L +  +   G   +   N +AV GT GK+S 
Sbjct: 57  ISNDINMVVYTAAISDDNEELVEAKNKNILLINRAAFLGQIMREYRNSIAVAGTHGKTST 116

Query: 130 ASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            S +  I   +     Q  PT      +S+   + R+   S  ++ +A  Y+ S      
Sbjct: 117 TSILSTIFDYA-----QTDPTVLVGGNLSTIGGNVRIGN-SKHFITEACEYVDSF----- 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                   L  + L GI L      N+  DH+DY         A    F +LLP+    I
Sbjct: 166 --------LSFNPLIGIVL------NIEEDHLDYFSGLDE-IKASFNKFGKLLPQSGYFI 210

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-------GKFIHLKKVCAIHNKQQVTISVEGK 298
           I  D+  +K+++   ++    ++  G             + +   AI N +   +++ G 
Sbjct: 211 INGDNENTKDIV---YDVRANIIRFGQNPDNDAIISDIRYDENGYAIFNLKYKGVNLGG- 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F   + G   +YNA  A    I   ID   + + + + H V  RFE  G       +
Sbjct: 267 ---FHLSVYGLHNIYNATAAILAAIVSDIDVDTIRKSVLEYHGVGRRFEKKGY-YNDALV 322

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             DYAH    ++  L   + +   ++ V F
Sbjct: 323 IDDYAHHPTEIKATLAAAKNLRDKKLWVAF 352


>gi|326797499|ref|YP_004315318.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
 gi|326548263|gb|ADZ76648.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
          Length = 454

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 128/333 (38%), Gaps = 58/333 (17%)

Query: 107 SRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRL 162
           S + GK  E+   +AV GT GK++ +S +  I   SG   S+F  G    I++    N L
Sbjct: 106 SEILGKISESHFTIAVAGTHGKTTTSSMIAHILTSSGRPCSAFLGG----IAANYNTNLL 161

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S +++ +A  +  S    H ++                      T    DH+D +  
Sbjct: 162 LADSDLFVVEADEFDRSFLTLHPNIAV-------------------VTATDPDHLDIYGD 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIY------ADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            +    +  RLF   + K+   II        D  Y+ E  KRA                
Sbjct: 203 SEHMLES-FRLFVNQVAKDGKRIIKEGLHLPTDIRYAVE--KRADVYATN---------- 249

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I ++  C   +      S+    FD    + G+  + NA+ A  +   +G+D   +   L
Sbjct: 250 IQIRNKCFYFDYLGYNKSI----FDIKLGIAGKHNIENAVAAITVAKLLGVDDEAISGSL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDR 394
                V  RFE++   +R  ++YV DYAH    L   L  ++ +   + I  VF      
Sbjct: 306 ASFKGVKRRFEYI--VNREDQVYVDDYAHHPEELRACLSAMKELYGDKEITCVF--QPHL 361

Query: 395 DQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP 425
               R  + + A  L LAD+ ++ D  P  E P
Sbjct: 362 FTRTRDFVDEFAEVLGLADVLLLMDIYPAREQP 394


>gi|15805654|ref|NP_294350.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
 gi|25008807|sp|Q9RWN9|MURC_DEIRA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|6458326|gb|AAF10205.1|AE001920_8 UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
          Length = 482

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 87/237 (36%), Gaps = 23/237 (9%)

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304
           A S  V+  A   G   L  G + +  + +   A +    V     G  FD  F      
Sbjct: 236 AQSGRVLFCADWPGLDTLCSGAREQLTYGQSAGADYRAVNVRPDESGTTFDVEFRGERLG 295

Query: 305 ----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                LPG   V N L A  +    G D       L   H    R+E  G   RGG + V
Sbjct: 296 EARVSLPGTHNVLNGLAALAVTHLYGGDFDRAARALADFHGPGRRWEIKG--ERGGALVV 353

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDD 418
            DYAH +  +   ++  R  T  R+ VVF      R Q   P +    +D AD  +V D 
Sbjct: 354 DDYAHNATKVASAVQAARQ-TGRRVRVVFQPHRYLRTQQSWPRLADALMD-ADEVLVLDI 411

Query: 419 NPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              SE P E + A +I       G P      +R   +R   E     D++V  G G
Sbjct: 412 AAASETPIEGVHATLITDRMTQGGHPNVHYCPDRAAVVRDLRESAQPGDIIVTMGAG 468


>gi|312622927|ref|YP_004024540.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203394|gb|ADQ46721.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 12/164 (7%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N+  DH++ H T + Y  AKMR+FE  + +    ++  D+  +++++  A   G  
Sbjct: 182 GCILNITPDHLNRHLTMENYTKAKMRIFEN-IDEMGYTVLNYDNNITRDLIGLAK--GNV 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLC 322
           ++    + +F   + V  + N   +  + EGK  + +      +PG+  + NAL A    
Sbjct: 239 IVFSKTKTQF---ENVVFVEN-DVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISCT 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           +  GI+   + + L+    V  R EFV     G + Y D   T+
Sbjct: 295 LPFGIEKDTIEQVLKTFRGVEHRIEFVA-EINGIKFYNDSKGTN 337


>gi|294651909|ref|ZP_06729199.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822232|gb|EFF81145.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 10/193 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 187 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAVVCGDDANIREILPRV- 245

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVA 318
             G  V++ G+  +   ++ +    +  +   +V  KD + L      PG   V NAL A
Sbjct: 246 --GRPVITYGFD-EDNDIRAIDVEQDGMRSHFTVLRKDREPLRVTVNQPGLHNVLNALAA 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKN 375
            G+    G+    +   L     V  RF+  G    G    ++  DY H    +E  +K 
Sbjct: 303 IGVATDEGVSDDAICRALAGFSGVGRRFQVQGEFEVGDGLVKLVDDYGHHPKEVEATIKA 362

Query: 376 IRTITSGRIIVVF 388
            R     R +V+ 
Sbjct: 363 ARASHPDRRLVML 375


>gi|329115575|ref|ZP_08244297.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pomorum DM001]
 gi|326695003|gb|EGE46722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pomorum DM001]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 44/186 (23%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGL---SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            + +TGT+GKS+  + +  I   + L   +   +GP +       DN       +Y+   
Sbjct: 154 FVGITGTNGKSTTTTLLAHILAEAKLPVAAGGNLGPAALALPLLPDNG------VYV--- 204

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +E SS+ L+  RLD ++  A    NL  DH+D H     Y  AK R+
Sbjct: 205 -------------LEMSSYMLE--RLDTLRFDAACLLNLTPDHLDRHAGMDGYAQAKKRV 249

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F     K+  A++  DD +            CR ++     +  H    C   +    T 
Sbjct: 250 FTGQTGKDM-AVVGMDDTW------------CRTIAA----ELEHEPAKCETISGTNPTC 292

Query: 294 SVEGKD 299
           S  GKD
Sbjct: 293 SYYGKD 298


>gi|295135754|ref|YP_003586430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
 gi|294983769|gb|ADF54234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
          Length = 430

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R+I+   +F A+ G   +G+ F  +A+ +GAE  +V       D  A  +     
Sbjct: 16  VSTDTRNIKPNSLFFALKGENFNGNEFAEEALNKGAEVAIV-------DEEAYAKDQDNY 68

Query: 93  LVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           + V++    L   A+  R +   P  +LA+TG++GK++    +  +  +
Sbjct: 69  IFVEDCLDALQQLATFHRHFLGIP--VLAITGSNGKTTTKELINAVLTK 115


>gi|254515245|ref|ZP_05127306.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
 gi|219677488|gb|EED33853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
          Length = 459

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 129/319 (40%), Gaps = 28/319 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR +  G +F+A+ G + DGH F+  AIA+GA A +V            ++ + P 
Sbjct: 28  VAIDSRQVSPGDLFIALPGERVDGHDFVDAAIARGAIAALVER---------PVQVSIPC 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V N    LS             ++A+TG+ GK++V +  + I   +G         ST
Sbjct: 79  LQVSNCLDALSEIGRASRDLSASVVVAITGSCGKTTVKNLCRSIFSEAG---------ST 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +++    N      P+ LA+            V + A+  G   H     +    +  N 
Sbjct: 130 VATAGNYNN-EIGVPLTLAR---LQDDTRYAIVEMGATKRGDIAHLCTLARPSITTVLNA 185

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++   +     + K  +++ L      AI+  D  +      R   AG + LS   
Sbjct: 186 MEAHLEGFGSVADVADIKAEIYDGL-GSSGAAIVNLDQPWVPLWRDRIAQAGAQALSYSL 244

Query: 273 QGK----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                  ++   + C +      T+ + G+     +PLPG   V NAL AA L IA G+ 
Sbjct: 245 DDSSADLYVSGLQECGLEGSA-FTLHIRGESRALKYPLPGRHSVANALAAAALAIAAGLS 303

Query: 329 SALVLEHLEKLHVVPGRFE 347
              ++  LE     PGR +
Sbjct: 304 LDQIVVGLEHAQAEPGRLQ 322


>gi|152989249|ref|YP_001350319.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa PA7]
 gi|189029019|sp|A6VB84|MURC_PSEA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150964407|gb|ABR86432.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PA7]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 120/325 (36%), Gaps = 50/325 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 72  ADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  +    GL      PT     F    RL          A  YL ++    
Sbjct: 125 GKTTTTSLIASVFAAGGLD-----PT-----FVIGGRLNAAGTNAQLGASRYLVAE---- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
            + E+ +  L       ++ +    TN+  DH+    T    FN   + F E    LP  
Sbjct: 171 -ADESDASFLH------LQPMVAVVTNIDADHM---ATYGGDFNKLKKTFVEFLHNLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISV 295
             A++  DD   +E++ +         +V Y         V AI+ +Q+        +  
Sbjct: 221 GLAVMCVDDPVVREILPQIARP-----TVTY--GLSEDADVRAINIRQEGMRTWFTVLRP 273

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354
           E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G     
Sbjct: 274 EREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQVE 333

Query: 355 GGRIYV--DYAHTSNSLEMILKNIR 377
           GG + +  DY H    +  ++K IR
Sbjct: 334 GGSVMLVDDYGHHPREVAAVIKAIR 358


>gi|21910619|ref|NP_664887.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28895693|ref|NP_802043.1| D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
 gi|21904821|gb|AAM79690.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28810942|dbj|BAC63876.1| putative D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
          Length = 455

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +  DSR I  G +F+ + G + +GH FI  A   GA A           FS      
Sbjct: 26  LHHIEFDSRKITKGDLFLPLKGQR-NGHEFIDLAFQNGAVAT----------FSEKELPG 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            P L+V++  K     A     K   +++AVTG++GK+S    +
Sbjct: 75  KPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMI 118


>gi|294783034|ref|ZP_06748358.1| tetrahydrofolate synthase [Fusobacterium sp. 1_1_41FAA]
 gi|294479912|gb|EFG27689.1| tetrahydrofolate synthase [Fusobacterium sp. 1_1_41FAA]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 150/370 (40%), Gaps = 77/370 (20%)

Query: 103 SLFASRL----------YGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           S+F+ RL          Y  +P+N   ++ +TGT+GK SV++ V+++   +G   +++G 
Sbjct: 18  SMFSIRLGLDNIKEICKYLGNPQNSYKVIHITGTNGKGSVSTTVERVLIDAG---YKVGK 74

Query: 150 TSTISSFAQDNRLT-----------------------------TPSPIYLAKALSYLSSQ 180
            ++      + R++                             T   +  A    Y    
Sbjct: 75  YTSPHILEFNERISFNDKYISNEDIAKYYEKVKKIIEEHKIQATFFEVTTAMMFDYFKDM 134

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              +V +EA   G    R D   +   +    TN+  DH +Y      Y   K+   +  
Sbjct: 135 KAEYVILEAGMGG----RYDATNICDNTVSVITNVSLDHTEY-LGDTIY---KIATEKAG 186

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISV 295
           + K  P  I+AD+  + +V K       + ++V   Y+     L       N     I++
Sbjct: 187 IIKNCPYTIFADN--NPDVKKAIEEVTDKYVNVLDKYKDSTYKLD-----FNTFTTNINI 239

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G  +++   L G++Q  N L A  +   +GID  ++ E ++K+ V   RFE     S+ 
Sbjct: 240 NGNIYEY--SLFGDYQYKNFLCAYEVLKYLGIDENIIKEAIKKV-VWQCRFEVF---SKN 293

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  D AH    +E ++K ++   +   + V+     D+D   R  M K   +++   +
Sbjct: 294 PLVIFDGAHNPAGVEELIKIVKQHFSKDEVTVLVSILKDKD---RASMFKKLNEISSSIV 350

Query: 415 VTD--DNPRS 422
           +T   DNPR+
Sbjct: 351 LTSIPDNPRA 360


>gi|146329426|ref|YP_001209869.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
 gi|189029172|sp|A5EY22|MURC_DICNV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146232896|gb|ABQ13874.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
          Length = 478

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 24/193 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH++ +        A    F   LP    A++  DDA  + ++            
Sbjct: 192 TNIDADHLENYNGSYETLKAGFVRFLHNLPFYGLAVLCIDDAGVRSILPEVGRPVRTYGF 251

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + +A  R ++V  +G  +H   +   H+        E + F     + G+  V NAL A 
Sbjct: 252 SEDADVRAINVRQKGLAMHFDVIA--HD--------EDRCFSVTLNMAGKHNVLNALAAI 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRG-GRIYVDYAHTSNSLEMILKNI 376
            +   +GID   ++E L +   V  RF   G   +  G   ++ DY H    ++ +L   
Sbjct: 302 IVGEELGIDRETIIEGLAQFKGVARRFTHHGRIAHDHGFADVFEDYGHHPREIKAVLDAA 361

Query: 377 RTITSG-RIIVVF 388
               +G RI+ VF
Sbjct: 362 MEGFAGRRIVAVF 374


>gi|332976264|gb|EGK13126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Desmospora sp. 8437]
          Length = 70

 Score = 41.6 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
          +I  +  DSR ++ G +F+A+ G   DGH FI QA+ +GA A+V+
Sbjct: 22 EITGMEVDSRRVRPGDLFIALKGFTVDGHRFIRQAVEKGARAVVL 66


>gi|229524524|ref|ZP_04413929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
 gi|229338105|gb|EEO03122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
          Length = 451

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  LF           L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAKKITADGSQFHVLFKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|229019116|ref|ZP_04175950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
 gi|229025359|ref|ZP_04181777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228735944|gb|EEL86521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228742132|gb|EEL92298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
          Length = 450

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 28/210 (13%)

Query: 194 LDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L   +L G+++      +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADD
Sbjct: 168 LSSFQLMGVEMFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETDY-SVINADD 226

Query: 251 AYSKEVMK-RAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           A   +VM   A + G +VL    +    G +I   K  A++ K +    V     D +  
Sbjct: 227 A---DVMTLSAQSKGQKVLFSTTKEIEDGAYI---KENALYFKGEKVAEVS----DIV-- 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAH 364
           LPG+  + N L A  +   +G+ +  +   L+    V  R E+V T N+R  + Y D   
Sbjct: 275 LPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNR--KFYND--- 329

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            S +  M+          + IV+   G DR
Sbjct: 330 -SKATNMLATEKALSAFTQPIVLLAGGLDR 358


>gi|261337516|ref|ZP_05965400.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
 gi|270277915|gb|EFA23769.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
          Length = 535

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 35/143 (24%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR    G +FVAI G   DGH ++      GA A +V             +S+   LVV
Sbjct: 48  DSRQAHEGSLFVAINGEHADGHAYVATLGDSGALAAIVDHEIP--------QSSVVQLVV 99

Query: 96  DNTRKFLSLFASRLYGKH-----------PENILAVTGTSGKSSVASFVQQICQRSG--- 141
           D+T K L   A     +            P +I+ +TG+ GK++    +  +    G   
Sbjct: 100 DDTVKALGELARHNLAQRRAMAAAHPDAAPFSIVGITGSVGKTTTKDLLHALLGELGETV 159

Query: 142 -------------LSSFQIGPTS 151
                        L++ Q+GP+S
Sbjct: 160 APVGSFNNELGLPLTALQVGPSS 182


>gi|222528782|ref|YP_002572664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|254766034|sp|B9MQ99|MURD_ANATD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222455629|gb|ACM59891.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 457

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 12/164 (7%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N+  DH++ H T + Y  AKMR+FE  + +    ++  D+  +++++  A   G  
Sbjct: 181 GCILNITPDHLNRHLTMENYTKAKMRIFEN-IDEMGYTVLNYDNNITRDLIGLAK--GNV 237

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLC 322
           ++    + +F   + V  + N   +  + EGK  + +      +PG+  + NAL A    
Sbjct: 238 IVFSKTKTQF---ENVVFVEN-DVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISCT 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           +  GI+   + + L+    V  R EFV     G + Y D   T+
Sbjct: 294 LPFGIEKDTIEQVLKTFRGVEHRIEFVA-EINGIKFYNDSKGTN 336


>gi|158318858|ref|YP_001511366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158114263|gb|ABW16460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 447

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 33/220 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R  + G +FVA  G   DGH +  QA   GA A + S    L           P +VV
Sbjct: 32  DGRQAEPGGLFVAFAGEHVDGHDYAGQAGRAGAVATLGSRPTPL-----------PTVVV 80

Query: 96  DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152
           ++ +  L   A+ +  +  +   ++ +TG+ GK+S    +  +     LSS    PT +T
Sbjct: 81  EDAQSALQALAAHVVARLRDGLTVVGLTGSQGKTSTKDLLAAV-----LSSAA--PTIAT 133

Query: 153 ISSFAQDNRLTTPSPIYLA-KALSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           I S   +N L  P  +  A  A  +L+   G  H+   A   GL       +        
Sbjct: 134 IGSL--NNELGVPLTMLRADPATRFLALEMGARHIGDIAELTGL-------VAPDIAVVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           N+G+ H+    +++A    K  L + L P  + A++ ADD
Sbjct: 185 NVGQAHLGEFGSREAIARTKGELVQGLAPGGT-AVLGADD 223


>gi|169824312|ref|YP_001691923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
 gi|167831117|dbj|BAG08033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 138/359 (38%), Gaps = 50/359 (13%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G+   AI  N ++    I   +    E+I     Y +   S  IR + P+++  N     
Sbjct: 24  GYNLGAIDDNIDEEKTKILNELDVQIESIDTIDKYDIILKSPGIRMDNPVILKANELNIE 83

Query: 103 SL----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            +     A R++G     I+A+TGT+GK++  S + ++   SG  +  IG          
Sbjct: 84  VVSDLELAQRIFGDIK--IVAITGTNGKTTTTSLMTKMLNDSGRKAISIG---------- 131

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                    I +       +S   T+  +E SS  L+  +    K       N+  DHID
Sbjct: 132 --------NIGVGMLWEIYNSDKDTYFVIECSSFQLESTK--NFKPQYSCIINITPDHID 181

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGK 275
           +H + Q Y NAK  + +    +    ++ ADD Y +E  K+   A    +S      +G 
Sbjct: 182 WHGSMQNYVNAKKNVLKN-QDENCYTVLNADDEYYEEC-KKFTKANVYDISTSKNVKRGS 239

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-----GEFQVYNALVAAGLCIAIGIDSA 330
           FI           +  +I     D D +  L      G     N L    L   IGI+  
Sbjct: 240 FI-----------KDNSIYFSDSDCDKIIDLKDVKLIGYHNYQNVLFCVTLAKLIGINDD 288

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            + E L     V  R EFV   S G + Y D   T  +++  +K I +     II+  G
Sbjct: 289 SIRETLMSFSGVEHRLEFVRDLS-GVKYYNDSKGT--NVDASVKAIESFDKNVIILAGG 344


>gi|332527091|ref|ZP_08403171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111522|gb|EGJ11504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +Q G +FVA+ G + DGH F+  A A+ A A+   + + L D         P 
Sbjct: 28  VHTDTRTLQPGDLFVALRGERFDGHEFL--ASAREAGAVAAIAEHGLSD-------ALPG 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           L V +    L   A+    +    ++AVTG++GK++V   V  I +
Sbjct: 79  LQVPDALAALQQLAAGWRARFTLPLVAVTGSNGKTTVTQMVAAILR 124


>gi|307824827|ref|ZP_07655050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
 gi|307734185|gb|EFO05039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
          Length = 519

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 168/412 (40%), Gaps = 96/412 (23%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA---------IAQGAEAIVV------- 73
           I+ VS D+R I+ G ++VAI G+  DG+ F+ +A         + QG  A  +       
Sbjct: 23  ISSVSIDTRAIKPGQLYVAIKGHNFDGNEFVAEAEQAGAVAAIVHQGITATAIDGGHDCS 82

Query: 74  --SSAY--SLQDFSATI-------------------------------------RSNTPI 92
             SSA+  S++  S  I                                     R   P 
Sbjct: 83  RQSSAFPPSMEVRSVAISTTAWKQDDCKDAGGRATQGAVAEVEQRMEQLPRELMRPTIPH 142

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+TR  L+  A     K   +++ +TG++GK++V   V  I   +  + F  G    
Sbjct: 143 IVVDDTRLALAELAGVWRKKAAVSVVGITGSNGKTTVKEMVAAILSVNADTLFTQGNL-- 200

Query: 153 ISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSF 209
                 +N +  P + + L +   Y +   G  H   +E +S    Q+    + +I    
Sbjct: 201 ------NNDIGVPLTLLRLNEQHRYAVIEMGANHPGEIEYTS----QYAQADVAII---- 246

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---YSKEVMKRAHNAGCR 266
           TN+G  HI+   +      AK  +  + L ++  A++  DDA   Y K +      AG R
Sbjct: 247 TNVGAAHIEGFGSIDGVAKAKGEII-QTLKQDGVAVLNRDDAYFDYWKSI------AGTR 299

Query: 267 -VLSVGYQGK---FIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVAA 319
            V+S G   +     H  K   I++    T   ++ +G +      L G   V NAL AA
Sbjct: 300 KVISFGIDERADVTAHSVKTEIINHAFATTFELVTAKG-ELTVKLKLAGRHNVVNALAAA 358

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             C+A+  D   + + LE +  V GR + +   SR G I +D  + +NS  +
Sbjct: 359 TACLALDTDLQQIKQGLESVKPVTGRLQPL--VSRLGNIVIDDTYNANSASL 408


>gi|293391356|ref|ZP_06635690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951890|gb|EFE02009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 434

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 26/143 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +GL   ++G    I                   ALS 
Sbjct: 106 IVAITGSNGKSTVTTLVAEMAKAAGL---RVGMGGNIG----------------IPALSL 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+ Q   +V +E SS  L+      +K +A +  N+  DH++ +   Q Y +AK+ ++  
Sbjct: 147 LNQQYDLYV-LELSSFQLETTY--SLKAVAATVLNVTEDHMNRYMDLQDYRHAKLNIYNH 203

Query: 237 LLPKESPAIIYADDAYSKEVMKR 259
                  A+I A+DA +    +R
Sbjct: 204 C----QTAVINAEDALTLPATQR 222


>gi|163760792|ref|ZP_02167872.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hoeflea
           phototrophica DFL-43]
 gi|162282114|gb|EDQ32405.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hoeflea
           phototrophica DFL-43]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 26/167 (15%)

Query: 102 LSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           + +FA       P+   +A+TGT+GKS+  + +  + + SG  + Q+G    I +     
Sbjct: 100 VEIFARERRAHAPDAAFIAITGTNGKSTTTALIAHLIEHSGRDA-QLG--GNIGTAVLTL 156

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
              T   +Y+                +E SS+ +D      +   AG   NL  DH+D H
Sbjct: 157 EPLTDDRVYV----------------IECSSYQIDLA--PSLDPSAGLLLNLTPDHLDRH 198

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            + Q Y   K R    L+ +   AII  DD + +++  +    G +V
Sbjct: 199 GSMQHYAEVKTR----LVAQSDMAIIGVDDDWCRDIATQIEADGRKV 241


>gi|152976274|ref|YP_001375791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|189082871|sp|A7GRN8|MURD_BACCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152025026|gb|ABS22796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 451

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADDA   +VM+ + N+ G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTAADY-SVINADDA---DVMELSANSKGQ 239

Query: 266 RVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           ++L S   + +     K  A++ K +  + +  KD      LPG+  + N L A  +   
Sbjct: 240 KILFSTTKEIEDGACIKENALYFKGEKVVEI--KD----IVLPGKHNLENILAAMSIAKL 293

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +G+ +  ++  L++   V  R E+V T
Sbjct: 294 LGVANEAIVAVLKRFTGVKHRLEYVTT 320


>gi|262401830|ref|ZP_06078395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
 gi|262351802|gb|EEZ00933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
          Length = 451

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 109/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S V  +    G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLDHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V KR    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVFKR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  LF           L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLFKGERVGQVNWSLVGDHNVSNALMAIAAVRHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|77462660|ref|YP_352164.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221638517|ref|YP_002524779.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332557542|ref|ZP_08411864.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
 gi|109892733|sp|Q3J4M1|MURC_RHOS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766019|sp|B9KNK0|MURC_RHOSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77387078|gb|ABA78263.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221159298|gb|ACM00278.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332275254|gb|EGJ20569.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I  DY 
Sbjct: 282 LPMPGDHNVSNALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVGEVG-GVTIIDDYG 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R    GR+I V
Sbjct: 341 HHPVEIAAVLKAARQAVKGRVIAV 364


>gi|15599607|ref|NP_253101.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAO1]
 gi|116052445|ref|YP_792757.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893502|ref|YP_002442371.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|254244778|ref|ZP_04938100.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|313106941|ref|ZP_07793144.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
 gi|23821886|sp|Q9HW02|MURC_PSEAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122257549|sp|Q02H29|MURC_PSEAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711872|sp|B7UZI9|MURC_PSEA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9950643|gb|AAG07799.1|AE004856_10 UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|115587666|gb|ABJ13681.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126198156|gb|EAZ62219.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|218773730|emb|CAW29544.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|310879646|gb|EFQ38240.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 120/325 (36%), Gaps = 50/325 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA+ +VVSSA +  +          I VV        L   R       + +AV GT 
Sbjct: 72  ADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAELMRYR-------HGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  +    GL      PT     F    RL          A  YL ++    
Sbjct: 125 GKTTTTSLIASVFAAGGLD-----PT-----FVIGGRLNAAGTNAQLGASRYLVAE---- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
            + E+ +  L       ++ +    TN+  DH+    T    FN   + F E    LP  
Sbjct: 171 -ADESDASFLH------LQPMVAVVTNIDADHM---ATYGGDFNKLKKTFVEFLHNLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISV 295
             A++  DD   +E++ +         +V Y         V AI+ +Q+        +  
Sbjct: 221 GLAVMCVDDPVVREILPQIARP-----TVTY--GLSEDADVRAINIRQEGMRTWFTVLRP 273

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354
           E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G     
Sbjct: 274 EREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQVE 333

Query: 355 GGRIYV--DYAHTSNSLEMILKNIR 377
           GG + +  DY H    +  ++K IR
Sbjct: 334 GGSVMLVDDYGHHPREVAAVIKAIR 358


>gi|115524121|ref|YP_781032.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
 gi|122296545|sp|Q07PT2|MURC_RHOP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115518068|gb|ABJ06052.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 134/342 (39%), Gaps = 66/342 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GADVVVVSTA---------IKRDNPELLAARAQRIPVVRRAEMLAELMRLKSCVAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S V  +     L + +  PT      I+++  + RL                  
Sbjct: 117 GKTTTTSMVAAL-----LDAGEFDPTVINGGIINAYGTNARLGAGE-------------- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
               + VEA     D+     +KL A     TN+  +H+D+ +T +A  NA  R F E +
Sbjct: 158 ---WMVVEA-----DESDGTFLKLPADVAIVTNVDPEHLDHFKTFEAVQNA-FRDFVENV 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTIS 294
           P    A++  D    + ++ +  +   R+++ G       + + LK      N    T  
Sbjct: 209 PFYGFAVMCIDHPVVQALVGKIEDR--RIITYGENPQADVRLLDLKP-----NGGASTFK 261

Query: 295 VEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           V  +D          D   P+PG     NA  A  +   +G+    + + L     V  R
Sbjct: 262 VAFRDRKANTAHEIADLKLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAGFGGVRRR 321

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           F   G +  G  I  DY H    +  +LK  R  T  ++I V
Sbjct: 322 FTKTG-DWNGVSIIDDYGHHPVEIAAVLKAARESTKTKVIAV 362


>gi|294670604|ref|ZP_06735483.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307729|gb|EFE48972.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 455

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    P     + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQTLNLPTSSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCAALDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|126461553|ref|YP_001042667.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|166224719|sp|A3PHS9|MURC_RHOS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126103217|gb|ABN75895.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I  DY 
Sbjct: 282 LPMPGDHNVSNALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVGEVG-GVTIIDDYG 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R    GR+I V
Sbjct: 341 HHPVEIAAVLKAARQAVKGRVIAV 364


>gi|296327766|ref|ZP_06870305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296155113|gb|EFG95891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 428

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 28/156 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 89  IIAITGTNGKSTTTAKISDMLNHAGYKATYAGN--------------------IGRSLSE 128

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ +++   Y+N K    
Sbjct: 129 VLLKEKDLDFISLELSSFQLEN--IENFKPCISMIINIGPDHIERYKSFDEYYNIKFN-- 184

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
             +   ++  + + ++   +E+ KRA     + +SV
Sbjct: 185 --ITKNQTEDLYFIENIDDEEIEKRAKQIKAKRISV 218


>gi|269127138|ref|YP_003300508.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
 gi|268312096|gb|ACY98470.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
          Length = 469

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 29/216 (13%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+ +G + +VVS  +          +   + +       L+   SR  G      LA+T
Sbjct: 62  DALPEGTDLVVVSPGWRPDAPLPAAAAAAGVEIYGEVE--LAWRLSREDGGRAAPWLALT 119

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT+GK++    +  I + +G  +  +G   T I   A D     PS   LA         
Sbjct: 120 GTNGKTTTVRMLACILRAAGHRAPAVGNVGTPIVEAALD-----PSCDVLA--------- 165

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ L  H    +   AG+  N+  DH+D+H + +AY   K +++      
Sbjct: 166 ------VELSSYQL--HWSSSLAPEAGAVLNVAPDHLDWHGSLEAYAADKGKIYA----P 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            + A+  ADD  S  +   A  A    L +   G+ 
Sbjct: 214 GTVAVFNADDEISTRLAAGAERAVGFTLGIPAPGQL 249


>gi|251792021|ref|YP_003006741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533408|gb|ACS96654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 26/143 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ +  GLS   +G    I                   ALS 
Sbjct: 106 IVAITGSNGKSTVTTLVAEMAKAGGLS---VGMGGNIG----------------IPALSL 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+ Q   +V +E SS  L+      +K +A +  N+  DH++ +   Q Y +AK+++++ 
Sbjct: 147 LNQQHDLYV-LELSSFQLETTY--SLKAMAATVLNVTEDHMNRYVDLQDYRHAKLKIYDN 203

Query: 237 LLPKESPAIIYADDAYSKEVMKR 259
                  A+I  +DA +    +R
Sbjct: 204 C----QTAVINGEDALTLPTTQR 222


>gi|229032111|ref|ZP_04188089.1| Folyl-polyglutamate synthetase [Bacillus cereus AH1271]
 gi|228729201|gb|EEL80199.1| Folyl-polyglutamate synthetase [Bacillus cereus AH1271]
          Length = 433

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 29/204 (14%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDS 329
           K   A+H +     S EG+ FDF  P          + G  QV NA +A    + +    
Sbjct: 226 KHFTALHKQS----SEEGEQFDFTCPFATFEDLRISMKGSHQVGNAALALMAVMYVKTYL 281

Query: 330 ALVLEH------LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
           + ++E       L++ + + GRFE + +N     I +D AH    +E ++K + +     
Sbjct: 282 SFLIEEEEIRTGLQEAYWI-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            +IV+F   GD+      ++G++     +I   T    R+   +K+ +          E 
Sbjct: 338 NVIVLFTALGDKQL--HNMVGQLETIADEIIFTTFAFDRAISADKLASYSKKESKLVFE- 394

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            N  EAI T +EM+ + DV ++ G
Sbjct: 395 -NWKEAIDTKVEMIGENDVFIITG 417


>gi|188990288|ref|YP_001902298.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732048|emb|CAP50238.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris]
          Length = 452

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 136/344 (39%), Gaps = 51/344 (14%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKH---P 114
           ++P  I+  A+ +V+ +A S        R N  +  V+D  R++ S   ++   +H    
Sbjct: 54  YLPANISADAQDVVIGNALS--------RGNAAVEAVLDAGRRYSS--GAQWLAEHVLPG 103

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            N LAV GT GK++  + +  + + +G +     P   I   A+D              +
Sbjct: 104 RNTLAVAGTHGKTTTTTILSYLLEAAGRA-----PGFLIGGVAEDF------------GV 146

Query: 175 SYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           S    QG   V VEA  +       + +    + +     NL  DH D          A 
Sbjct: 147 SARLGQGQEFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPD----VAAI 201

Query: 231 MRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAI 285
            R F  L+   P     I+  +DA   EV+      GC   V   G+        ++ A 
Sbjct: 202 QRQFHHLVRTVPARGRLIVNGEDARLAEVLA----MGCWTPVERFGFDPALDWSAQLLAD 257

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              +   +    +     +PL G   V N L A     A+G+D A V+  L +   V  R
Sbjct: 258 DGSRFAVLHRGEEIGQVQWPLLGRHNVLNGLAALAAVQAVGVDPATVMPALARFQSVKRR 317

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            E +G  ++G  +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 318 LEVLG-QAQGITVYDDFAHHPTAIATTLQGLRAKVGTARVLVAM 360


>gi|323144096|ref|ZP_08078736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
 gi|322416111|gb|EFY06805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
          Length = 440

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 112/285 (39%), Gaps = 40/285 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++  + +  I + + L+  F +G      +F    R  T SP ++ +A
Sbjct: 91  KKVLAVAGTHGKTTTTAMLAWILEANNLNPGFLVG--GIPENFGYSAR-ATESPYFVIEA 147

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ---QAYFNAK 230
             Y  +        +  S  L  H    I        NL  DH D   +    +  F+  
Sbjct: 148 DEYDCA------FFDKRSKFLHYHPFVQI------LNNLEFDHADIFNSLDDIKKQFHHL 195

Query: 231 MRLFEE----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAI 285
           +R        ++P   PA+   +D     V       G +    G   K I     V A+
Sbjct: 196 VRTVPGNGTIVMPYAYPAL---EDVLKMGVWTPVKRIGGKD---GLHAKLIKQDGSVFAV 249

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +N  +    V  +         GE+ V NAL+AA    A+G+D    L  LE   +   R
Sbjct: 250 YNGAEFICEVNAQ-------FCGEYNVSNALMAAAAAAAVGVDLKKALLSLETYKMPKRR 302

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVF 388
            E+ G       +Y D+AH   ++++ L  +R       RII VF
Sbjct: 303 MEYKGCEGN-VVVYDDFAHHPTAIKLTLNGLRAKVGKDKRIIAVF 346


>gi|284172781|ref|YP_003406163.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
 gi|284017541|gb|ADB63490.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
          Length = 810

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 169/424 (39%), Gaps = 64/424 (15%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
           D+  +++   P L  + T   L+     L   H + + + + G++GK S A  ++++ + 
Sbjct: 8   DYLESLQRRRPKLGTETTAALLT----HLDRPHEDLDCVQIAGSNGKGSTACMLERVLRD 63

Query: 140 SGLS--------------SFQIG----PTSTISSFAQD-------NRLTTPSPIYL---- 170
           +GL                 QI     P   +  F  +        R    +P Y     
Sbjct: 64  AGLDVGLYTSPDLNDLRERIQINGRKIPKQRVQEFVAEIDDCVERLREVDDTPTYFEVLT 123

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDG---IKLIAGSFTNLGRDHID-YHQTQQAY 226
           A AL + +++ V    +E    G    R D    +  +A + T++  +H D    T +  
Sbjct: 124 ALALHHFANEDVDVAVLEVGIGG----RYDATSAVDPVASAVTSVSLEHTDILGDTIEEI 179

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
              K ++     P ++P +  A  A  + +          V++VG     + + +   + 
Sbjct: 180 ARDKAQVS----PADAPLVTGASGAALEAIRSETD-----VITVGSDDADV-VAREHGLA 229

Query: 287 NKQQVTISVEGKDFDF--LFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVP 343
           +  +  IS+ G  + F    PL G  Q  NA VAA L   + G+D   +   L   +  P
Sbjct: 230 SPIESEISIAGPKWSFETRLPLVGPHQATNAGVAATLADQVAGVDPESIARGLRDSY-WP 288

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GRFE + T        +D AH   + E +   +   +   + +VFG   ++D   R +  
Sbjct: 289 GRFEVMSTTPLA---ILDGAHNPGACETLASLVDRYSFDDLHLVFGAMREKDH--RGMAA 343

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVL 462
            +    A + +   D PR+E+ + + A      P  I+  G+ +EA   A+   ++ D +
Sbjct: 344 ALPSPDA-LYLCEPDVPRAENTDAL-AAAFDDRPATIDCAGSVLEATERALSAADEGDCV 401

Query: 463 VVAG 466
           +V G
Sbjct: 402 LVTG 405


>gi|144897248|emb|CAM74112.1| UDP-N-acetylmuramate--alanine ligase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 474

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 28/194 (14%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+DY+ +     +A  R F E +P    A    D    + ++ R  +   ++++
Sbjct: 182 TNIDPEHMDYYGSFDKLRDA-FRTFVENIPFYGFAACCIDHPEVQALIARVPDR--KIVT 238

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----------------FPLPGEFQVY 313
            G+  +        A+     V I   G  +D +                 P+ GE  V 
Sbjct: 239 YGFSPQ--------ALIRATNVKIGPGGARYDVVITDRVTGATRIIDDVRLPMYGEHNVL 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L A      +G+ + +V + L     V  RF   G  ++G  +  DY H    +  +L
Sbjct: 291 NSLAAIACANELGLTNDVVRKALGGFSGVKRRFTKTG-EAKGITVIDDYGHHPVEINAVL 349

Query: 374 KNIRTITSGRIIVV 387
           K  R+ T+G +I V
Sbjct: 350 KAARSATTGNVIAV 363


>gi|303235010|ref|ZP_07321634.1| bifunctional protein FolC [Finegoldia magna BVS033A4]
 gi|302493865|gb|EFL53647.1| bifunctional protein FolC [Finegoldia magna BVS033A4]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 151/389 (38%), Gaps = 65/389 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSS--------------FQIGPTSTISSFAQ---- 158
           I+ V GT+GK S ++F+ Q  +  G  +               +I    +   F +    
Sbjct: 41  IIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFMRIFEI 100

Query: 159 --------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI----KLIA 206
                   D +++T   I L  A+ Y + Q   +V +E    G    RLD      + + 
Sbjct: 101 IKNTIEENDIKVSTFEFITLC-AIYYFAEQKCEYVVLEVGMGG----RLDATNATDETLL 155

Query: 207 GSFTNLGRDHIDY---HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              T +G DH +Y      + AY  A       ++ +    ++Y       +V +     
Sbjct: 156 SVITKIGLDHQEYLGNTLEEIAYEKAC------IMKQNGRCVVYNQQESVLDVFREVAEE 209

Query: 264 GCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               L   Y   F   K  ++ A HN      S + K+      L G +Q++NA +A   
Sbjct: 210 RNNKL---YICDFDEAKNIEINATHN------SFDWKNLHIETRLVGRYQLFNAQLALTA 260

Query: 322 CIAIGIDSALVLEHL---EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
              +  +  L  E +    K   +P RF+ +  N     +  D  H ++ ++ +  +I +
Sbjct: 261 IDVLRDELDLSDEDIINGFKNAYIPARFDVIRHNPT---VIYDGGHNADGVKALKSSIES 317

Query: 379 IT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +    +I+ V+G   D+D      +  I  +       T D+PR+   E ++ +I     
Sbjct: 318 VFGDKKIVFVYGVLKDKDYNDEIKL--IHENAKAFVTFTPDSPRALKAEDLKKQIEVYSD 375

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             + K N  +A+  AIE   K DV+++ G
Sbjct: 376 NVVAKSNVNDAVDYAIEHF-KDDVIIIFG 403


>gi|145223571|ref|YP_001134249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate--D-alanyl-D-alanyl ligase
          [Mycobacterium gilvum PYR-GCK]
 gi|145216057|gb|ABP45461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium gilvum PYR-GCK]
          Length = 504

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
          R R    V  DSR + AG +F+A+ G + DGH F   A+A GA A++ +
Sbjct: 27 RLRVTGTVEFDSRAVTAGGLFLALPGARSDGHDFAATAVASGAVAVLAA 75


>gi|225351421|ref|ZP_03742444.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157765|gb|EEG71048.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 31/158 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK+S                     T   S       LT P+   + KA+S+ 
Sbjct: 107 IGITGTNGKTST--------------------TEMTSEMLTACDLTAPAVGNIGKAVSHA 146

Query: 178 SSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  V  VE SS  L  H  D + L   + TN+  DH+D+H   + Y   K ++F  
Sbjct: 147 VVDPANDVLCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIENYAADKAKVFHR 204

Query: 237 LLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY 272
           +      A++Y ADD     +   A  A GCR   VG+
Sbjct: 205 V----KKALVYNADDERVTRLAFAAETAEGCR--KVGF 236


>gi|160894558|ref|ZP_02075334.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
 gi|156863869|gb|EDO57300.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
          Length = 460

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 119/322 (36%), Gaps = 56/322 (17%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQI 136
           ++F A    N P+L    TR       ++L G+   N    +AV+GT GK++  + +  I
Sbjct: 84  EEFQAAKAKNIPML----TR-------AQLLGQIMTNYKYSVAVSGTHGKTTTTAMLSYI 132

Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              +      + PT ++     D   N     S  ++ +A  Y +S            H 
Sbjct: 133 MLEA-----DVDPTISVGGIIDDIGGNIRVGSSDYFVTEACEYTNS-----------FHA 176

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +    I +I     N+  DH+D+    +         F    P+    I+  D  Y 
Sbjct: 177 FSPY----ISII----LNVDADHLDFFSGIEE-IAESFHTFATKTPENGKVIVNGDMKYF 227

Query: 254 KEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
             V +   +  C+V++ G      Y    I   +      +   T+ ++G++  D    +
Sbjct: 228 DTVTR---DLKCQVITFGEDPKNHYSAANIRFDEF----GRPTYTLVIDGENITDITLHV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  VYN+L A      +GID   +   L        RFE+ GT     ++  DYAH  
Sbjct: 281 FGKHNVYNSLSAIAAATELGIDIDAIKAGLLHCKGAERRFEYKGTILDNVKVMDDYAHHP 340

Query: 367 NSLEMILKNIRTITSGRIIVVF 388
             +   L   +      +  VF
Sbjct: 341 TEIAATLAAAKNTDYHELWCVF 362


>gi|91216028|ref|ZP_01252997.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186005|gb|EAS72379.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 447

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FAS   G    NI+ +TG++GK++V + V  I + +GLS    G      SFA+      
Sbjct: 95  FASWFTGA---NIIGITGSNGKTTVTNMVYHILKNAGLSVSMAGNVGF--SFAEQ----- 144

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQ 223
                       ++ Q   +  +E SS  LD   ++  +      T++  DH+D YH   
Sbjct: 145 ------------VARQSFHNYVLELSSFQLDG--VEDFRPHIAILTSITPDHLDRYHDNF 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Q Y  AK ++ +    K+   I   DD        K  +K           +     FI 
Sbjct: 191 QEYIQAKFKITKN-QTKDDFLIYNKDDKVIVNWLEKNTVKAQLIPFTNTTIMTDLSAFIE 249

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             K+    N    T+SV          + G+    NA+ A+     + I    + E +E 
Sbjct: 250 NNKINIKLNHNLFTMSVND------LSVKGDHNTRNAMAASTAARLLKIRKQTIRESMES 303

Query: 339 LHVVPGRFEFVG 350
              V  R E +G
Sbjct: 304 FQGVEHRLEQLG 315


>gi|56421350|ref|YP_148668.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261418169|ref|YP_003251851.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. Y412MC61]
 gi|297529026|ref|YP_003670301.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|319767871|ref|YP_004133372.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
 gi|68565686|sp|Q5KW36|MURC_GEOKA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56381192|dbj|BAD77100.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261374626|gb|ACX77369.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC61]
 gi|297252278|gb|ADI25724.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|317112737|gb|ADU95229.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
          Length = 434

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 104/296 (35%), Gaps = 65/296 (21%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           F  +L GK     +AVTG+ GK++    +  + Q +  +S+ IG   T            
Sbjct: 93  FLGQLAGKFTS--IAVTGSHGKTTTTGLLAHVMQGAHPTSYLIG-DGTGKGEPGSKYFVF 149

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            +  Y    LSY     +                           TN+  DH DY     
Sbjct: 150 EACEYRRHFLSYFPDYAI--------------------------MTNIDFDHPDYFANVD 183

Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKK 281
             F+A    F+++  +   AI+   DD Y   +      A   +L  G+  +  F     
Sbjct: 184 DVFSA----FQQMANQVKKAIVACGDDPYLPNI-----QAKVPILFYGFGEENDF----- 229

Query: 282 VCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                  + +  + EG  FD          F  P  G   V NAL    LC   G+D+  
Sbjct: 230 -----QARNIVKTTEGMAFDVFVRNTFFASFAIPRFGTHNVLNALAVIALCHYEGVDAGT 284

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIV 386
           + + L+    V  RF      + G ++ + DYAH    +   L+  R    GR +V
Sbjct: 285 IAKRLQTFQGVKRRFS---EKTVGRQVLIDDYAHHPREITATLEAARQKYPGREVV 337


>gi|330446841|ref|ZP_08310492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491032|dbj|GAA04989.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 23/120 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V S V ++ + +G+    +G    I  FA  + L     +Y+ +  S+
Sbjct: 110 VVAITGSNGKSTVTSLVGEMAKEAGI---DVGVGGNI-GFAALDMLAQQHQLYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E +S          ++L A  + NL  DH+D Y      Y  AKMR+F+
Sbjct: 166 ---------QLETTSS---------LELTAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFD 207


>gi|261337518|ref|ZP_05965402.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277918|gb|EFA23772.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
          Length = 474

 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 100/265 (37%), Gaps = 44/265 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S    V  +    G ++  +G                     +  A
Sbjct: 100 PAPWIGITGTNGKTSTTEMVSTMLTACGYTAPAVG--------------------NIGNA 139

Query: 174 LSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           LS  +      V  VE SS  L  H  D + L   + TN+G DH+D+H   + Y   K +
Sbjct: 140 LSLAAVDPNNDVLCVELSSFQL--HFTDSMALDCAAITNIGADHLDWHGGIERYAADKSK 197

Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLS----------VGYQGKFIHLKK 281
           ++         AI+Y A DA  ++ +  A +A C  +           +G    +I  + 
Sbjct: 198 VYAH----AQQAIVYNAQDARVRD-LAFAADASCARIGFTLDVPQDGMIGVADGWIVDRA 252

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY---NALVAAGLCIAIGIDSALVLEHLEK 338
                +     +     DF  L    G    +   +A+ A    ++ G D+A  LE L+ 
Sbjct: 253 GLMGSDPATPVMVAPVADFTHLREPDGTVYPHLLADAMTALAWVLSFGADAAPALEALKT 312

Query: 339 LHVVPGRFEFVG--TNSRGGRIYVD 361
                 R E V   T+  G   ++D
Sbjct: 313 FKPGGHRIECVAQYTSDEGAIRFID 337


>gi|88704096|ref|ZP_01101811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
 gi|88701923|gb|EAQ99027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 124/296 (41%), Gaps = 31/296 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +     ++ ++ DSR +  G +FVA+ G + DGH +I  A+A GA A +V        
Sbjct: 17  PYEGAPLAVSGITIDSRAVTPGDLFVALPGERVDGHNYIDAAVANGAIAALVEH------ 70

Query: 82  FSATIRSNTPILVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
               + ++ P L V +    LS    ASR + +    ++A+TG+ GK++V +  + I   
Sbjct: 71  ---PVDADVPCLRVSSCLAALSDIGRASRDFSRSL--VIAITGSCGKTTVKNLCRSIFT- 124

Query: 140 SGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                 Q GPT +T  ++  +N +  P  + LA+            V + A+  G   H 
Sbjct: 125 ------QAGPTVATAGNY--NNEIGVP--LTLAR---LDDETRFAIVEMGATRRGDIAHL 171

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +    +  N    H++   +     + K  +F+ L   +  AI+  D  +     +
Sbjct: 172 CALARPSITTVLNAMEAHLEGFGSVADVADIKAEIFDGL-GAQGTAILNLDQPWVSLWRE 230

Query: 259 RAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           R   AG   +S  +G +G               + T+ V G++    FPLPG   V
Sbjct: 231 RIARAGADTVSYSLGEEGDITVADLRDLGLQGSEFTLRVHGEEQAVRFPLPGRHSV 286


>gi|91977862|ref|YP_570521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisB5]
 gi|91684318|gb|ABE40620.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisB5]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 22/153 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + + +G  +   G   T     +  R                
Sbjct: 117 VAITGTNGKSTTTALIAHLMREAGYDTQMGGNIGTAILSLEPPR---------------- 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  HV +E SS+ +D      +    G   N+  DHID H T + Y   K RL   +
Sbjct: 161 --SGRVHV-IEMSSYQIDL--TPSLAPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
               + AII  DD + ++   R   AG +V+ +
Sbjct: 216 QDGGT-AIIGVDDGFGRDAADRLERAGKQVVRI 247


>gi|310779640|ref|YP_003967973.1| UDP-N-acetylmuramate--L-alanine ligase [Ilyobacter polytropus DSM
           2926]
 gi|309748963|gb|ADO83625.1| UDP-N-acetylmuramate--L-alanine ligase [Ilyobacter polytropus DSM
           2926]
          Length = 443

 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 114/285 (40%), Gaps = 47/285 (16%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIY 169
           + E  +AV GT GK++ +S +       G +   + PT  +     +   N     S ++
Sbjct: 99  NEEQGIAVAGTHGKTTTSSML-------GAAMLSLDPTIVVGGILPEINSNAKAGSSKLF 151

Query: 170 LAKA----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           +A+A     S+L     T +                        TN+  DH++ H + + 
Sbjct: 152 IAEADESDNSFLYLNPFTSI-----------------------ITNIEADHLENHGSLEN 188

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                 R F E + K    +I   D  + ++V+K       +  S+      I+   +  
Sbjct: 189 I----ERSFIEFIDKTKDEVIVNIDCENIRKVIKGKEK--IKTYSLKNNNADIYASNIRV 242

Query: 285 IHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +K    ++V G++   F+  +PGE  V N+L    L    G++   + + L+      
Sbjct: 243 EDSKIHYEVTVCGENLGTFVLSVPGEHNVSNSLPVIYLAHKYGVEKEEMKKMLKFFKGAK 302

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            R++ +    +  +I  DYAH    ++  L+  R+I  G+I+ VF
Sbjct: 303 RRYDIL--YDKNVKIIDDYAHHPTEIKATLQGARSIEKGKIVAVF 345


>gi|220933947|ref|YP_002512846.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995257|gb|ACL71859.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 442

 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 25/134 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ + +GL            + A       P       AL  
Sbjct: 108 VVAITGSNGKSTVTALVGEMARAAGL------------NVAVGGNFGIP-------ALDL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+   V    +E SS  L+    + +  +A +  N+  DH+D +++ + Y  AK R+F  
Sbjct: 149 LNDADVELYVLELSSFQLET--TESLAPVAATVLNISADHLDRYESLEDYAAAKERIFR- 205

Query: 237 LLPKESPAIIYADD 250
              +   A+I  DD
Sbjct: 206 ---RTETAVINRDD 216


>gi|331696621|ref|YP_004332860.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951310|gb|AEA25007.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 476

 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 123/290 (42%), Gaps = 45/290 (15%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+H T++AY  A    F   + ++   ++ ADDA +  + ++A   G  V  
Sbjct: 184 TNVEPDHLDHHGTEEAY-RAVFEAFVGRIAEKGTLVVCADDAGAAALGEQAEARGLTVRR 242

Query: 270 VGYQGK-------FIHLK-----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            G             H+      ++ A H   ++ + +          +PGE    NAL 
Sbjct: 243 YGRTATGPDDAVLLDHVPDGPGARMRARHRDAELAVRLA---------VPGEHMALNALA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    + +G     +L  L +   V  RFEF G  + G  +Y DYAH    +   L+  R
Sbjct: 294 ALLAGVELGAPVDGLLAGLAEFDGVRRRFEFKG-RAAGVAVYDDYAHHPTEVAATLRAAR 352

Query: 378 TIT--SGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------- 427
           ++   +GR++V F      R +      G+ AL LAD  +V D     EDPE        
Sbjct: 353 SVAGPTGRVVVAFQPHLYSRTRLFATEFGR-ALALADEVVVLDVYGAREDPEPGVTGALV 411

Query: 428 -----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
                +  +++H +P +    +++ A+     +    D+++  G G  TV
Sbjct: 412 ADAVTLPPQVVHHVPSW----SQVPAVLA--RLARPGDLVLTMGAGDVTV 455


>gi|212696146|ref|ZP_03304274.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676775|gb|EEB36382.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 463

 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 114/294 (38%), Gaps = 56/294 (19%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPI 168
           K+ +N +AV+G+ GKS+  S + +I   S  +     PT  +     +   N       I
Sbjct: 109 KNYKNSIAVSGSHGKSTTTSMISKILMNSTKN-----PTILLGGDLDEIEGNVHVGDEEI 163

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            + +A  Y  +    + S+                   G   N+  DH+DY++      N
Sbjct: 164 LVTEACEYKGNIRYYYPSI-------------------GIILNIDEDHLDYYKD----LN 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHL--KKVCAI 285
             +  F+  L  +        D  SK ++     N    + SV  QG+ I    +   A 
Sbjct: 201 DIIETFKSYLKNQ--------DENSKTILNLNEENNKLVIDSV--QGELITYGQENPDAD 250

Query: 286 HNKQQVTISVEGKD-FD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +N   +T   +GK  FD          F   + G   + NA  A    +  G+D   +  
Sbjct: 251 YNATNITFDEDGKPRFDLIMKDGSTEHFELSILGRHNINNACAAIISTLESGVDIETIKN 310

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            ++    +  R + +G N  G +I +DY H  + +++ L  +   T GR+I V+
Sbjct: 311 SIQSYKGLERRMQLLG-NIDGCKIILDYGHHPSEIQVNLSALAEHTKGRLICVW 363


>gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 97/229 (42%), Gaps = 32/229 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I    +F+A+ G+  + + F  +A+ +GA  +++       D          +
Sbjct: 16  VCTDTRKISPNSLFIALKGDNYNANEFAQEALNKGALFVIIDDKKYYTD-------ENKM 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V+N+ + L   A+    +    I+A+TG++GK++    +  +  +   +   IG    
Sbjct: 69  LLVNNSLQALQELANYHRNQLGLPIIALTGSNGKTTTKELINVVLSKKYKTIATIGNL-- 126

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIA---- 206
                 +N +  P        L+ LS +  T +++    ++H   Q  ++ +  I     
Sbjct: 127 ------NNHIGVP--------LTLLSIKEDTDIAIVEMGANH---QKEIESLCSITEPDF 169

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           G  TN G+ H++     +     K  ++  L      A +  DD+  +E
Sbjct: 170 GYITNFGKAHLEGFGGIEGVIKGKSEMYTYLKTHNKTAFVNLDDSIQEE 218


>gi|320183625|gb|EFW58468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           CDC 796-83]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L ++   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDAECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+       K +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSWKAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|307720865|ref|YP_003892005.1| Mur ligase middle domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978958|gb|ADN08993.1| Mur ligase middle domain protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 48/309 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQD--NRLTTPSPIYL 170
           I+ +TG+ GK+S+ +F  QI        F++  T    +T+     D  N L+  + IY+
Sbjct: 162 IICITGSYGKTSIKNFTAQILSHK----FKVYATPRSVNTLGGIIADINNNLSQDTEIYV 217

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A +  S         E ++       L+   ++ G    +G  HI+Y ++ +     K
Sbjct: 218 CEAGARQSGD-----IYEITTF------LEPQTVVVG---RVGEAHIEYFKSLKNIIATK 263

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + + +   PK   A I+        V    H        V + G    +K + A      
Sbjct: 264 LEIMQS--PKLKQAFIHT------SVTDEPHE------KVTFFGD--EIKNIDAGLEGTD 307

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I +EGK       + G FQ  N  VA  +  + G+    +++ ++ L  V  R + + 
Sbjct: 308 FDIELEGKTLHLHTDILGAFQTMNIAVAVRIAKSFGLSDDEIIDAVKNLEPVEHRLQLI- 366

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGR-IIVVFGCGGDRDQGKRPIMGKIAL 407
               GG+I +D  +  N ++ +L+ IR  ++  GR +IV  G     D+    ++  I  
Sbjct: 367 --KAGGKIILDDGYNGN-IDGMLEGIRLCSLHKGRKVIVTPGLVESSDELNLKLIEAIN- 422

Query: 408 DLADIAIVT 416
            + DI IVT
Sbjct: 423 KVFDIVIVT 431


>gi|311742797|ref|ZP_07716606.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
 gi|311314425|gb|EFQ84333.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
          Length = 467

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 164/407 (40%), Gaps = 58/407 (14%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHP----ENILAVTGTSGKSSVASFVQQICQ 138
           S  +R + P  +V+  R+ L L+  R  G          +AV GT GK++  + +     
Sbjct: 81  STAVRDDNP-EIVEALRRGLRLW-PRSAGLRSVMDGHTTVAVAGTHGKTTTTAMLTCALV 138

Query: 139 RSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +G+  SF IG  + ++S   + R  T   + +A+A                     D+ 
Sbjct: 139 GAGVDPSFAIG--AEVASLGANARRGT-GEVLVAEA---------------------DES 174

Query: 198 RLDGIKLI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAY 252
             DG  L+    A   TN+  DH+D   T++AY  A    F E +   +   ++ ADD  
Sbjct: 175 --DGAFLVYHPAAAVVTNVDADHLDTWGTEEAYAAA----FTEFIGTVAEFVVLSADDPG 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----LPG 308
           ++ +   A   G  VL  G+            +   +    +  G+  + L P    +PG
Sbjct: 229 ARALAAPAAERGLEVLLAGFADDAEVRGTDVVVDGTRSTFTAWRGR--ERLGPVELAVPG 286

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V +AL+A    + +G D   ++  L        R + +G  + G R+Y  YAH    
Sbjct: 287 DHYVQDALMALAAGLRLGADPHGLVAGLATYTGAHRRMQPLGEVA-GVRVYDSYAHHPTE 345

Query: 369 LEMILKNIRTITS-GRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +   L   R +    R++V F      R +     MG   L  AD+ +V D     EDP+
Sbjct: 346 IRADLAAARQVAGDDRLVVAFQPHLVSRTRIFGAAMGA-ELSAADLVVVADLYLAREDPD 404

Query: 427 -----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                ++ A+ + G+P  +  G   +     ++ L   D+L+  G G
Sbjct: 405 PQVGAELVADAVVGVP-VLLGGAVADLPALLLDHLRPGDLLLTLGAG 450


>gi|288800560|ref|ZP_06406018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332773|gb|EFC71253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 122/300 (40%), Gaps = 49/300 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +     I           P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKEAG---YDVSLAGNIGKSLALQVAEAPHAYYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y    Q Y +AKMR+ +
Sbjct: 155 ----------IEISSFQLDD--MYDFRANTAVLLNITPDHLDRYEYKMQLYTDAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKR---------AHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                +S      DD  + E+ K          + NA   V +    G+ +  K V    
Sbjct: 203 NQTKDDSFVYWADDDVVAAELHKYNIEAQQLTFSENASNSVAACVDNGEIVVKKPVEFTM 262

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           ++ +++             L G   +YN+L AA    A G+D   + + L     V  R 
Sbjct: 263 SRAELS-------------LLGRHNLYNSLAAALAAAANGVDVEAIKQGLRTFAGVEHRL 309

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC--GGDRDQGKRPIMGK 404
           E+V T + G R Y++ +  +N ++     + ++T+  I+++ G   G D ++ K+ ++ K
Sbjct: 310 EYV-TTANGVR-YINDSKATN-VDACRWALESMTTPTILILGGLDKGNDYNEIKQLVLDK 366


>gi|114330272|ref|YP_746494.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
 gi|122314677|sp|Q0AJE2|MURC_NITEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114307286|gb|ABI58529.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
          Length = 473

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 96/436 (22%), Positives = 169/436 (38%), Gaps = 79/436 (18%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVT 121
           Q A+A+V+S+A         I+ + P ++    R+      ++  + L   H    +A+ 
Sbjct: 63  QSADAVVISTA---------IQPDNPEVIAARERRIPVVPRAMMLAELLRLHQG--IAIA 111

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQ 180
           GT GK++  S V  I   +G       PT     F    RL T  S   L K        
Sbjct: 112 GTHGKTTTTSLVASILAEAGQD-----PT-----FVIGGRLKTVDSHARLGKG------- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFE 235
               + VEA         L  +  +    TN+  DH+     D+++ +Q +       F 
Sbjct: 155 --EFIVVEADESDASFLYLQPVLTVV---TNIDADHMSTYEHDFNRLKQTFVE-----FI 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV------CAIHNKQ 289
           E LP    A++ ADD +   ++        +V + G   +   ++        C +H   
Sbjct: 205 EHLPFYGMAVLCADDPHVSAIIPMVSK---QVTTYGITSENAQIRATDIRHDQCKMHFCA 261

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            + ++   +  D    LPG+  V NAL A  +   + I    +++ L     V  RF+  
Sbjct: 262 HIGVNGSARTLDITLNLPGKHNVLNALAAIAVGNELNIPDEAMVKALATFGGVDRRFQQY 321

Query: 350 G----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGK 404
           G     + R   +  DY H    +   +   R    G R+++VF     R    R +   
Sbjct: 322 GEIRLPDRRSFTLIDDYGHHPAEIAATMAAARNAFPGRRLVLVF--QPHRYSRTRDLFED 379

Query: 405 I--ALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGI--PGFIEKGNRIE-AIRTA 452
               L  AD  ++T+     E+P         +RA  + G   P +IE  N ++ A+ T 
Sbjct: 380 FVRVLSSADALLLTEIYSAGEEPIIAADSKSLVRAIRVQGKIEPIYIEHINELKSAVHTV 439

Query: 453 IEMLNKQDVLVVAGKG 468
           ++   + DV+++ G G
Sbjct: 440 VQ---EGDVVLIMGAG 452


>gi|323496076|ref|ZP_08101136.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sinaloensis DSM 21326]
 gi|323318820|gb|EGA71771.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sinaloensis DSM 21326]
          Length = 455

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 115/284 (40%), Gaps = 35/284 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVG--GVLGNFGVSARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----K 201

Query: 232 RLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L+   P     +    +A   +V++R    GC   +   G Q ++   +K+ A  
Sbjct: 202 RQFHHLVRTVPGNGRILAPKHEAAISDVLER----GCWSETEFSGEQSEW-QAEKLSA-- 254

Query: 287 NKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +  Q  +  + K    + + L G+  V NAL+A      +G+   L  + L K      R
Sbjct: 255 DGSQFKVYFQAKAVGVVNWDLVGDHNVNNALMAIAAARHVGVTPDLACDSLAKFISTKRR 314

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            E  G    G  +Y D+AH   ++E+ L  +R  +   RI+ V 
Sbjct: 315 LELKG-EVHGVTVYDDFAHHPTAIELTLDGLRNKVGQNRILAVL 357


>gi|315443918|ref|YP_004076797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium sp. Spyr1]
 gi|315262221|gb|ADT98962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium sp. Spyr1]
          Length = 501

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
          R R    V  DSR + AG +F+A+ G + DGH F   A+A GA A++ +
Sbjct: 24 RLRVTGTVEFDSRAVTAGGLFLALPGARSDGHDFAATAVASGAVAVLAA 72


>gi|312888796|ref|ZP_07748359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
 gi|311298671|gb|EFQ75777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
          Length = 461

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 145/358 (40%), Gaps = 52/358 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S    I + +GL+   +G    I                  K+ +Y
Sbjct: 121 MICITGSNGKTTTTSLTYHILKNAGLN---VGLAGNI-----------------GKSFAY 160

Query: 177 -LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
            ++++   +  +E SS  LD   +   K       N+  DH+D Y    + Y  +K R+ 
Sbjct: 161 QVATEQFDYYVLEISSFMLD--NMYKFKADIAVLLNITPDHLDRYDYKMENYTASKFRIA 218

Query: 235 EELLPKESPAIIY-ADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQ 290
           +      +   IY ADD  + K + +R   A     S+         KKV   A  ++Q 
Sbjct: 219 QN--QTAADYFIYCADDPETIKGIAEREIEAQLLTFSIE--------KKVERGAYLDQQD 268

Query: 291 VTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + I+   + F        L G+  +YN++ +      + I +  + + +E    +  R E
Sbjct: 269 LIINATLEHFKMSLNKLALQGKHNIYNSMASGITSKVLDIRNKTIRDSMEDFQNIEHRLE 328

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FVG  S    I    A   NS    L+++    S  +I++ G G D+      +   +  
Sbjct: 329 FVGKISGISFINDSKATNVNSTWYALESM----SNNVILILG-GVDKGNDYNMLKELVKQ 383

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +  I  +  DN R  D  +   ++I      +   +  EA++ A  +  K D ++++
Sbjct: 384 KVKSIVCMGKDNNRIHDAFEDDVDVI------VNTSSASEAVQVAYHLATKGDTVLLS 435


>gi|156740113|ref|YP_001430242.1| FolC bifunctional protein [Roseiflexus castenholzii DSM 13941]
 gi|156231441|gb|ABU56224.1| FolC bifunctional protein [Roseiflexus castenholzii DSM 13941]
          Length = 454

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 12/128 (9%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-----PGRFEFVGTNSRG 355
           D +  LPG FQV NA +A G  + +  D+ L +        +     PGR E +  +   
Sbjct: 266 DIMPSLPGIFQVVNARLATGAALLLR-DAGLPITDAAIAAGLASARWPGRMEIIDGSP-- 322

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I +D AH   S++ ++ ++  I  G R ++VFG   D+D  +  ++  +A  +  + +
Sbjct: 323 -PIVLDGAHNGESIQQLVVSLNRIFPGRRCVIVFGASRDKDLAR--MIPALAPAIDALVL 379

Query: 415 VTDDNPRS 422
               +PR+
Sbjct: 380 TASRHPRA 387


>gi|222109851|ref|YP_002552115.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
 gi|221729295|gb|ACM32115.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
          Length = 861

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQV N + A G    +G+    +   L          PGRF  +  + RG  +  DY H 
Sbjct: 674 FQVENVMAAIGAAWGVGLPWQTIRRGLAGFMNDSDNAPGRFNVM--DYRGATVIADYGHN 731

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPR 421
            +++  +++ ++ + +  R +V+ G G  RDQ    +  I+G+ A D  D+ +  D   R
Sbjct: 732 PDAMRALVQAVQAMPARQRSVVISGAGDRRDQDIVEQTQILGQ-AFD--DVVLYQDACQR 788

Query: 422 SEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++ A +  G+ G        E      AI  A+E L   D+ +V
Sbjct: 789 GRADGEVLALLRQGLQGAPRTRYVTEIHGEFIAIDHALERLQPGDLCLV 837


>gi|125623755|ref|YP_001032238.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|158512796|sp|A2RJQ3|MURD_LACLM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|124492563|emb|CAL97506.1| MurD protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070524|gb|ADJ59924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 38/201 (18%)

Query: 179 SQGVTHVSVEASSH---GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +Q    + +E SS    G+D  R   I LI    TNL   H+DYH +Q+AY  AK R+ E
Sbjct: 158 AQATDTLVMELSSFQLMGIDTFR-PKIALI----TNLFSAHLDYHGSQEAYEAAKWRIQE 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +          ADD     ++   +   CR L+   +        V A   K++V+ + 
Sbjct: 213 NM---------TADDF----LILNFNQEKCRKLADKTKA------TVLAFSTKEKVSGAY 253

Query: 296 --EGKDF---DFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             EGK +   +F+       LPG+  + NAL A       G ++  ++E L     V  R
Sbjct: 254 VNEGKIYFKDEFIMEASELSLPGDHNLENALAAIVASKLRGAENEAIVEVLTSFAGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTS 366
            +++G    G ++Y D   T+
Sbjct: 314 LQYLG-EIDGRKVYNDSKATN 333


>gi|312880220|ref|ZP_07740020.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
 gi|310783511|gb|EFQ23909.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
          Length = 462

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 22/131 (16%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           ++L VTG++GK++  S +  + +  G+                  R++    I     L+
Sbjct: 110 SLLGVTGSNGKTTTTSLIGHLLREEGV------------------RVSVAGNI--GNPLA 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +    V  E SS  L  H    ++      TNL  DHID+H + +AY +AK  L  
Sbjct: 150 SAVREEAEWVVAELSSFQL--HWARRLRCSLAVVTNLAPDHIDWHGSYEAYVDAKANLVR 207

Query: 236 ELLPKESPAII 246
            L P    AI+
Sbjct: 208 ALDPTTGMAIV 218


>gi|253997368|ref|YP_003049432.1| UDP-N-acetylmuramate--L-alanine ligase [Methylotenera mobilis JLW8]
 gi|253984047|gb|ACT48905.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera mobilis JLW8]
          Length = 479

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 116/286 (40%), Gaps = 40/286 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S +  I   +G+  +F IG    + +   + +L T   I    A + 
Sbjct: 108 IAVAGTHGKTTTTSLIASILGEAGMDPTFVIG--GKLEAANANAKLGTGDYIV---AEAD 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S     H++                  +    TN+ +DH+D ++       +    F +
Sbjct: 163 ESDASFLHLTP-----------------VMAVVTNIDQDHMDTYEHSFEKLKSAFVEFLQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS- 294
            LP    A++  DDA  +E++ R       V++ G  +   I  K V A   K   T+  
Sbjct: 206 QLPFWGMAVVCVDDANIREILPRVTKP---VMTYGLSEDARIRAKNVRADDGKMHFTVQR 262

Query: 295 VEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351
           + G   +FD    LPG   V NAL A  +   + +  A +++ L++   V  RFE  G  
Sbjct: 263 INGVTTEFDVTLNLPGNHYVLNALAAIAIASELNVPDAAIIKALKEFKGVGRRFERYGEV 322

Query: 352 -----NSRGGRIYV---DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
                N+     +    DY H    ++ ++   R    + R+++ F
Sbjct: 323 PAMPRNAASAGTFTLIDDYGHHPVEMQAVIAAARGAFPNRRLVMAF 368


>gi|87301576|ref|ZP_01084416.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
 gi|87283793|gb|EAQ75747.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
          Length = 487

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 72/194 (37%), Gaps = 41/194 (21%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TNL  DH D++   +A      R                   ++        NA C 
Sbjct: 186 GLITNLELDHTDHYPDLEALIQTLQR-------------------FAAGCGSLLANADCP 226

Query: 267 VLSVGYQ-GKFIHLKK-------VCAIHNKQQVTISVEGKDF--------DFLFPLPGEF 310
           VL   +Q G +  +++         A+    + T++    DF         F  PLPG  
Sbjct: 227 VLRQHFQPGAWWSIERSEGVEFAALAVEEHGEGTMA----DFYENGELVGRFSLPLPGRH 282

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA  A   C   G+    +   +  L     RF+F G  + G ++  DYAH  + +E
Sbjct: 283 NLSNATAALAACRLEGVPFGALATAMRTLRSPGRRFDFRGRWA-GRQVVDDYAHHPSEVE 341

Query: 371 MILKNIR-TITSGR 383
             L   R  +TSGR
Sbjct: 342 ATLHMARLMVTSGR 355


>gi|322378887|ref|ZP_08053304.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
 gi|322380387|ref|ZP_08054593.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321147177|gb|EFX41871.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321148697|gb|EFX43180.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
          Length = 464

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 51/331 (15%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD- 159
           ++SL   +L       I+A+TG+ GK+SV +++ QI Q        +   +T+   +QD 
Sbjct: 124 YVSLAKEKLKRMKNLQIIAITGSFGKTSVKNYLYQILQGKFTIYSSLNSVNTLLGLSQDI 183

Query: 160 -NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              L   S +Y+A+A +    +G     ++A    L+ H            T +G  HI+
Sbjct: 184 NQNLDETSTLYIAEAGA--RQKG----DIKAIGSLLEHHY--------AIITEIGNQHIE 229

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y +   + +  K  L       +SP +I A   Y K  ++  +      + + Y G+  H
Sbjct: 230 YFKDIDSIYETKAELL------QSPRLIQA-FCYDKNPLEPFYTELTDKIKL-YPGQIRH 281

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGIDS 329
                          ++EG  F+             + G F V N  +A  +     I  
Sbjct: 282 ------------ANATLEGTSFELFLDNQWVAFETKILGAFNVDNIALAVLMGHYFDISI 329

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVV 387
             +   + KL+ VP R   +  N    +  +D     N L+ +L+++R  ++  GR I+V
Sbjct: 330 PQLQRLVAKLNPVPHRLHPLHIND---KFIIDDGFNGN-LKGMLESVRLASLYMGRRIIV 385

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
                + D      + K    + DIAI+T +
Sbjct: 386 TPGLVESDVESNTTLAKAIDSVFDIAIITGE 416


>gi|319937184|ref|ZP_08011591.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. 29_1]
 gi|319807550|gb|EFW04143.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. 29_1]
          Length = 436

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 107/263 (40%), Gaps = 26/263 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            N+  DH+DY Q+ + Y    ++ FE+   + +   +++ DD +   +     N   RVL
Sbjct: 168 NNIEMDHVDYFQSIEQY----VQSFEQFANQVKDTVVVWGDDPHLPHL-----NYTKRVL 218

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326
             G   K  +  K +   ++     + + G  F  F  P  G   +Y++L    L     
Sbjct: 219 KFGISDKNDVIAKNIINNNHGLYFDVYIHGDLFGHFALPFYGMHMLYDSLAVITLGYLEN 278

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRII 385
           +D+  + + L     V  R+        G  +YV DYAH   +++ +++  R+   G+ I
Sbjct: 279 MDADYIQKRLSTFDGVKRRYT---VQEVGNNVYVDDYAHHPTAIKYVIEATRSRYPGKEI 335

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-----IHGIPGFI 440
           V         +G R      A + A+   + D       PE  + E      IH I  ++
Sbjct: 336 VAIFQPDRFSRGLR-----FAKEFAESMNLADYPFLVHFPENAKKEAGIDIDIHEIGQYL 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVLV 463
            +   I     A+++L + D +V
Sbjct: 391 PRAIVIHEDEDAVKLLAEHDDVV 413


>gi|313903440|ref|ZP_07836831.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466261|gb|EFR61784.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 549

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 20/160 (12%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LF  R  GK    +L VTG++GK++  + + +  +++       GP +    F   N 
Sbjct: 170 IDLFLERCRGK----VLGVTGSAGKTTTTTLLAEGLRQAAAPG---GPLAGRPVFVGGN- 221

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           +  P    L + +  +  + +  V +E SS  L+  HR   + +    + NL  +H+D H
Sbjct: 222 IGRP----LIEEVDRIPPEAL--VVLELSSFQLELCHRAPDVAV----YLNLRPNHLDIH 271

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            T +AY  AK R+  EL   +  A++ AD+     +  RA
Sbjct: 272 GTMEAYAAAKARIV-ELQEPDGWAVLNADEPAPAGLAGRA 310


>gi|256751766|ref|ZP_05492639.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749294|gb|EEU62325.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 427

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 92/443 (20%), Positives = 162/443 (36%), Gaps = 123/443 (27%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L ++N RK L       Y  +P+    I+ V GT+GK S ++F+  I Q++G     +  
Sbjct: 20  LGLENIRKLLD------YMGNPQKSLKIIHVAGTNGKGSTSAFISNILQQAGYK-VALYT 72

Query: 150 TSTISSFAQDNRLT-------------------------------TPSPIYLAKALSYLS 178
           +  +  F +  R+                                T   +  A A  Y  
Sbjct: 73  SPYLEEFEERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFY 132

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-- 236
            + V  V +E    G    R D    I  S  ++    IDY  T +         +E+  
Sbjct: 133 DEKVDFVVLEVGLGG----RFDATNAIDSSLVSV-ITTIDYDHTDRLGHTLGEIAYEKAG 187

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           ++ ++   + +     + +V+  A    C V +               +  K  V I  +
Sbjct: 188 IIKQKGVVVSFYQQPEAMKVIIEA----CEVRNA-----------YLTVLEKSNVIIKEQ 232

Query: 297 GKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----- 342
             DF         D    L GE Q+YNA              AL +E +EKL +      
Sbjct: 233 NPDFQIFDYKKYKDLKITLLGEHQIYNA--------------ALAVESVEKLRMYGYEVT 278

Query: 343 -------------PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
                        PGR E +    +   + +D AH    + ++ ++++     ++I+V G
Sbjct: 279 EKDIKEGLYRAKWPGRLEVM---RKKPYVVIDGAHNPQGMTVLKESLKLFKYDKLILVIG 335

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--- 446
              D+D  K   M  I +  AD+ I T   P SE     RA     +   I+K N I   
Sbjct: 336 MLKDKDTQK---MLDIIVPEADMIITT--TPISE-----RAYKASELAQKIDKENVIPIE 385

Query: 447 ---EAIRTAIEMLNKQDVLVVAG 466
              +A++ A+++  ++D+++  G
Sbjct: 386 NIEKAVKYALDIAKEEDMVLFCG 408


>gi|217077223|ref|YP_002334941.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho africanus TCF52B]
 gi|217037078|gb|ACJ75600.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho africanus TCF52B]
          Length = 433

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 17/188 (9%)

Query: 281 KVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           K+  I N    Q++TI+       F+  +PG     NAL    L   +G +  LVLE   
Sbjct: 227 KINKIENNKFSQKITINTPYGKKKFILNVPGVHNALNALSIISLLFEMGYEKDLVLEAFS 286

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              +   RF+ +  N     I  DY+HT   ++ +L   +++   + I +        + 
Sbjct: 287 DFSLPKRRFD-ISYNENDIVIIDDYSHTPVEIKSLLSTAKSVFKDKKITIIFQPHRYSRL 345

Query: 398 KRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           KR       AL LAD   +T+     E    I A +I            +E I  AI + 
Sbjct: 346 KREWKNFSEALSLADKIYITEVYGAFESKNGISARLI------------VEKINNAIFVQ 393

Query: 457 NKQDVLVV 464
            K+++L +
Sbjct: 394 EKEELLQI 401


>gi|253689952|ref|YP_003019142.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259509777|sp|C6DEU2|MURC_PECCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251756530|gb|ACT14606.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 486

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 135/348 (38%), Gaps = 74/348 (21%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+        L   R +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRAEMLAELMRFR-HG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  + V  I   +GL  +F  G    + +     RL + S   +A+A     S+L  Q +
Sbjct: 132 TTTAMVTSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADESDASFLHLQPM 188

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +     +  +D ++        G F NL          +Q + N     F   LP   
Sbjct: 189 VAIVTNIEADHMDTYQ--------GDFENL----------KQTFIN-----FLHNLPFYG 225

Query: 243 PAIIYADDAYSKEVMKR----------AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQ 289
            A++  DDA  +E++ R          + +A  RV     VG QG F   +K     +K 
Sbjct: 226 QAVMCIDDAVIRELLPRVGRHITTYGFSDDADVRVSGYRQVGAQGHFTLERK-----DKP 280

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +T+++           PG     NA  A  +    GID   +L  LE+      RF+F+
Sbjct: 281 LLTVTLNA---------PGRHNALNAAAAVAVATDEGIDDEAILRALERFQGTGRRFDFL 331

Query: 350 G------TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           G       N + G   +  DY H    ++  +K  R      R++++F
Sbjct: 332 GEYPLELVNGQSGTAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIF 379


>gi|325846778|ref|ZP_08169693.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481536|gb|EGC84577.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 463

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 114/294 (38%), Gaps = 56/294 (19%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPI 168
           K+ +N +AV+G+ GKS+  S + +I   S  +     PT  +     +   N       I
Sbjct: 109 KNYKNSIAVSGSHGKSTTTSMISKILMNSTKN-----PTILLGGDLDEIEGNVHVGDEEI 163

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            + +A  Y  +    + S+                   G   N+  DH+DY++      N
Sbjct: 164 LVTEACEYKGNIRYYYPSI-------------------GIILNIDEDHLDYYKD----LN 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHL--KKVCAI 285
             +  F+  L  +        D  SK ++     N    + SV  QG+ I    +   A 
Sbjct: 201 DIIETFKSYLKNQ--------DENSKTILNLNEENNKLVIDSV--QGELITYGQENPDAD 250

Query: 286 HNKQQVTISVEGKD-FD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +N   +T   +GK  FD          F   + G   + NA  A    +  G+D   +  
Sbjct: 251 YNATNITFDEDGKPRFDLIMKDGSTEHFELSILGRHNINNACAAIISTLESGVDIETIKN 310

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            ++    +  R + +G N  G +I +DY H  + +++ L  +   T GR+I V+
Sbjct: 311 SIQSYKGLERRMQLLG-NIDGCKIILDYGHHPSEIQVNLSALAEHTKGRLICVW 363


>gi|260426600|ref|ZP_05780579.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
 gi|260421092|gb|EEX14343.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
          Length = 475

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I  DY 
Sbjct: 290 LPMPGDHNVSNALAAVAVARHLGMKREEIRLALAAFGGVNRRFTRVG-EVNGVTIIDDYG 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R  T GR+I V
Sbjct: 349 HHPVEIAAVLKAARQATEGRVIAV 372


>gi|218131936|ref|ZP_03460740.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
 gi|217985812|gb|EEC52152.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
          Length = 432

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 169/397 (42%), Gaps = 45/397 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTP 91
           V++DSR+   G +F+A+ G+  +G+ F  +A+  G       SAY++ D +  + + +T 
Sbjct: 16  VTTDSRNCPKGSLFIALKGDNFNGNAFAAKALEAG-------SAYAIVDEADYVPAGDTH 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN+ + L   A+    +    I+ +TGT+GK++    +  +  R     + I    
Sbjct: 69  YILVDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSR----KYNI---- 120

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFT 210
               + Q N     +PI +   L  L ++    +    +SH  D   L  I +   G  T
Sbjct: 121 ---LYTQGN---LNNPIGVPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L  K +S   I+ D+ Y  ++       G   +S
Sbjct: 175 NVGKGHLEGFGSFEGVIRTKGELYDYLRQKGDSTIFIHQDNPYLTKLA-----WGLNPIS 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            G Q        V    N   +        EG   +    L GE+ + NAL A  +    
Sbjct: 230 YGEQDGLYVNGHVTG--NSPYLIFEWKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFF 287

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGR 383
           G++   + + L +      R +   T      + +D A+ +N   M+  + N   + +G+
Sbjct: 288 GVEPEKIDQALNEYEPRNNRSQLKKTADN--TLIID-AYNANPTSMLASISNFHNMQAGQ 344

Query: 384 IIVVFG----CGGDRDQGKRPIMGKI-ALDLADIAIV 415
            +++ G     G D  +  + I+  +   D  D+A+V
Sbjct: 345 KMLILGDMRELGKDSPEEHQKIVDYLEKCDFKDVALV 381


>gi|159045011|ref|YP_001533805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912771|gb|ABV94204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 479

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 136/344 (39%), Gaps = 29/344 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS D+R +  G +FVA+   + DGH F+ QA+A GA A +VS           +  +
Sbjct: 24  VTGVSIDTRELAPGDLFVALTAAR-DGHDFVAQALAAGAGAALVSR------IPEGVAED 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L+V + +  L         +    ++A+TG+ GK+S    ++      G +      
Sbjct: 77  APLLLVPDVQTALEALGRAGRARTEARVIAITGSVGKTSAKEMMRAALASQGRAH----- 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +   SF  +N      P+ LA+ +   +   V  + +          R+   +  A   
Sbjct: 132 -AAERSF--NNHWGV--PLTLAR-MPAGTEVAVIEIGMNHPGEIAPLARM--ARPHAALI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++   + +A    K  +FE L P +  A+I  D   +  +   A +AG R+ S
Sbjct: 184 TTIAAAHLEALGSLEAIAVEKASIFEGLEP-DGLAVIPGDLPQTPILRAAAEDAGARIES 242

Query: 270 VGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G      H L  V A+         + G +       PG   +  AL        +G D
Sbjct: 243 FGTGAGNTHRLSDVQAVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAGVGAD 302

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            A  L  L       GR    GT     R+ +D    + S+E+I
Sbjct: 303 PARALMALGAWAPPSGR----GTRE---RLQLDPVIEAMSIELI 339


>gi|113460502|ref|YP_718566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 129PT]
 gi|112822545|gb|ABI24634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           129PT]
          Length = 436

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 48/248 (19%)

Query: 108 RLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            L+ +H    I+A+TG++GKS+V + V ++ +  GL   ++G    I             
Sbjct: 98  ELFCRHANKPIIAITGSNGKSTVTTLVSEMAKEDGL---KVGMGGNIG------------ 142

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 AL  L      +V +E SS  L+      +K  A +  N+  DH+D +   + Y
Sbjct: 143 ----IPALELLQQDYDIYV-LELSSFQLETTY--SLKATAATILNISEDHMDRYLDIEDY 195

Query: 227 FNAKMRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             AK+R++E        A+I A+D   + E +K         ++ G       LK     
Sbjct: 196 RQAKLRIYENC----QRAVINAEDVLTTTEDLKSP-------ITFGESQADYWLK----T 240

Query: 286 HNKQQVTISVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            N +Q  ++ E      + P     L G     NAL A+ L  A+ I    +   L K  
Sbjct: 241 ENGKQYLMAKE----RLILPCDEMKLVGRHNYMNALAASALVQAVDISFTAIRTALRKFT 296

Query: 341 VVPGRFEF 348
            +  RF+ 
Sbjct: 297 GLAHRFQL 304


>gi|289624983|ref|ZP_06457937.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647041|ref|ZP_06478384.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488536|ref|ZP_07006566.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156877|gb|EFH97967.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 486

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 168/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 219 PFYGLAVMCIDDPVVREILPLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 275 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 324

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 325 FQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQP--HRFSRTRDL 382

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 383 YDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAP 440

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 441 LVKPLLRAGDILLCQGAG 458


>gi|254282164|ref|ZP_04957132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
 gi|219678367|gb|EED34716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 22/118 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GKS+V   V  I + SG            S+ A    L TP       AL  
Sbjct: 102 VIGITGSNGKSTVTEMVAAILRASG------------SAVAVGGNLGTP-------ALDL 142

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L      +V +E SS  L+  R + + L   +  N+  DH+D H +   Y  AK R+F
Sbjct: 143 LEHPADIYV-LELSSFQLE--RSEKLGLAVATVLNISADHLDRHGSMPRYHQAKHRIF 197


>gi|254507374|ref|ZP_05119509.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
 gi|219549630|gb|EED26620.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
          Length = 453

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 112/281 (39%), Gaps = 34/281 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEACGYQPGFLVG--GVLGNFGVSARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIH 286
           R F  L   +P          D    +V++R    GC     S G QG +   +KV  ++
Sbjct: 202 RQFHHLVRTVPGNGRIFAPKQDKALADVLER----GCWSETESSGEQGDW-QAEKV--VN 254

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +     +  +G    +  + L G+  V NAL+A      +G+   L  + L K      R
Sbjct: 255 DGSHFKVFFQGNQVGEVRWSLVGDHNVDNALMAIAAARHVGVTPDLACDALGKFINTKRR 314

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            E  G  + G  +Y D+AH   ++E+ L  +R     R I+
Sbjct: 315 LECKGEIA-GVTVYDDFAHHPTAIELTLGGLRNKVGPRRIL 354


>gi|146305955|ref|YP_001186420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina ymp]
 gi|145574156|gb|ABP83688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           mendocina ymp]
          Length = 448

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 45/292 (15%)

Query: 109 LYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           L+ +H +  I+A+TG++ KS+V + V ++   +G               A    L TP  
Sbjct: 102 LFARHAKAPIVAITGSNAKSTVTTLVGEMAAAAG------------KRVAVGGNLGTP-- 147

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                AL  L+     +V +E SS  L+    D +     +  N+  DH+D +    AY 
Sbjct: 148 -----ALDLLADDVELYV-LELSSFQLETT--DQLNAEVATCLNISEDHMDRYSGLPAYH 199

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK R+F          ++  DDA S+ ++  A    C    +G        K+   +  
Sbjct: 200 LAKHRIFR----GARQVVVNRDDALSRPLI--ADQVTCWEFGLGKP----DFKRFGLLEE 249

Query: 288 KQQVTISVEGKDFDFLFPLP-----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             + +++     F+ L P+      G     NAL A  L  A+G+    +L  L +   +
Sbjct: 250 NGEKSLAFR---FEALLPVSELKIRGAHNQSNALAALALGHAVGLPMEAMLATLRQFAGL 306

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGG 392
           P R ++VG   R G  Y D +  +N  +    ++ +    +G+++++ G  G
Sbjct: 307 PHRCQWVG--ERAGVNYYDDSKATNVGAALAAIEGLGADIAGKLVLIAGGDG 356


>gi|47779372|gb|AAT38601.1| predicted UDP-N-acetylmuramate: L-alanyl-diaminopimelate ligase
           [uncultured gamma proteobacterium eBACHOT4E07]
          Length = 432

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 114/278 (41%), Gaps = 40/278 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKAL 174
           N+ A++GT GK++ +  +  I    G    +IG     IS    ++      PI++ +A 
Sbjct: 102 NVFAISGTHGKTTTSYMLAHIFLDQGR---EIGYLVGGISDDFDNSACLGKDPIFVIEAD 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA---KM 231
            Y              S   D+      K I  S TNL  ++I++       FN      
Sbjct: 159 EY-------------DSAFFDKRS----KFIHYSPTNLIINNIEFDHAD--IFNDIEDVK 199

Query: 232 RLFEELLP--KESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           + F  L+   K S  IIY  DD+ SKEV+++     C  + +   G       V A    
Sbjct: 200 KQFHHLIKIIKSSGNIIYFDDDSTSKEVIEKG--IWCSKIGINSNG-------VKADFES 250

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +++ I  E    + L PL GE    N + +       GI     +  L+K   V  R +F
Sbjct: 251 KELIIDDEIFQLNEL-PLIGEHNFKNYVCSILAAKLEGISETESINSLKKFKGVKRRMDF 309

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +   S G RIY D+AH   ++++    IR   S + I+
Sbjct: 310 IKEIS-GIRIYDDFAHHPTAIKLSCSAIRNKYSDKKIL 346


>gi|293391359|ref|ZP_06635693.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951893|gb|EFE02012.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 497

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 137/382 (35%), Gaps = 71/382 (18%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V+SSA    +       +  I V+   +    L   R +G      +AV GT GK
Sbjct: 98  GASVVVISSAIHGDNPEVMAAKDARIPVIQRAQMLAELMRFR-HG------IAVAGTHGK 150

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           ++  + V  I   +GL    +     +   A  N     S   +A+A     S+L  Q +
Sbjct: 151 TTTTAMVSMIYAEAGLDPTFV--NGGLVKSAGTNAHLGCSRYLIAEADESDASFLHLQPM 208

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +        +D +                  H D+ + +Q Y N     F   LP   
Sbjct: 209 ISIVTNIEPDHMDTY------------------HGDFDEMKQTYVN-----FLHNLPFYG 245

Query: 243 PAIIYADDAYSKEVMKR----------AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQ 289
            A++ ADD    E++            + NA  R+      G+QG   H   +C      
Sbjct: 246 LAVLCADDEVLMELVPLVGRQVITYGFSENADYRIEDYQQTGFQG---HYTVICP----- 297

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                  G+  D L  +PG     NA  A  +    GI +  +L  L        RF+ +
Sbjct: 298 ------NGERIDVLLNVPGRHNALNATAALVVAKEEGIKNDAILAALADFQGAGRRFDQL 351

Query: 350 GTNSR-GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           G   R  G++ +  DY H    + + ++  R    + RI+++F     R    R +    
Sbjct: 352 GQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIFQP--HRYSRTRDLFDDF 409

Query: 406 --ALDLADIAIVTDDNPRSEDP 425
              L   D+ I+ D  P  E P
Sbjct: 410 VQVLSQVDVLIMLDVYPAGEAP 431


>gi|241765146|ref|ZP_04763134.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
 gi|241365225|gb|EER60072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
          Length = 475

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 22/225 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +D+R +QAG +FVA+ G + D + F+  A A GA A +               + 
Sbjct: 30  VARVHTDTRTLQAGDLFVALKGERFDANAFLADARAGGAVAAIAHGGLEA--------AG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-SGLSSFQIG 148
            P + V ++   L   A+    +    ++ +TG++GK++V   V  I +   G ++F   
Sbjct: 82  LPGIEVPDSLAALGALAAGWRAQFGLPLIGITGSNGKTTVTQMVASILRAWKGEAAF--- 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             ST  +F  D  +        A   + +   G+ H    A+   + Q     + L+   
Sbjct: 139 --STQGNFNNDIGVPLTLLRLRAAHAAAVIEMGMNHPGEIATLAAIAQPT---VALV--- 190

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             N  R+H+++  T +A       +    LP +  A+  A D YS
Sbjct: 191 -NNAQREHLEFMHTVRAVAEENGSVLAA-LPADGVAVFPAGDPYS 233


>gi|229829365|ref|ZP_04455434.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
 gi|229792528|gb|EEP28642.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
          Length = 451

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 19/217 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T +  E SS  L+   ++    +  +  N+  DH++ H T + Y   K R+ E     E+
Sbjct: 155 TRIVAEVSSFQLET--IETFHPLVSAILNITPDHLNRHHTMENYIACKERITENQTADET 212

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  +D   +E  K   N       V + GK   LKK      + +     +G++ +F
Sbjct: 213 -VVLNLEDPILREFGKTLPNH-----VVWFSGKR-RLKKGYYYREEDRSIRYCQGQEEEF 265

Query: 303 LFPLP-----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  +      G     NA+ A  +  A+G+    + E L     V  R E+V T  RG R
Sbjct: 266 ILSVRELQVVGRHNYENAMAAIAISRAMGVPMDKIKEGLRAFTAVEHRIEYVCTK-RGVR 324

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            Y D   T+   +  +K I  + S   ++  G G D+
Sbjct: 325 YYNDSKGTNP--DAAIKGIEAMDSPTCLI--GGGYDK 357


>gi|169824784|ref|YP_001692395.1| folylpolyglutamate synthase [Finegoldia magna ATCC 29328]
 gi|167831589|dbj|BAG08505.1| folylpolyglutamate synthase [Finegoldia magna ATCC 29328]
          Length = 415

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 151/389 (38%), Gaps = 65/389 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSS--------------FQIGPTSTISSFAQ---- 158
           I+ V GT+GK S ++F+ Q  +  G  +               +I    +   F +    
Sbjct: 41  IIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFMRIFEI 100

Query: 159 --------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI----KLIA 206
                   D +++T   I L  A+ Y + Q   +V +E    G    RLD      + + 
Sbjct: 101 IKDTIEKNDIKVSTFEFITLC-AIYYFAEQKCEYVVLEVGMGG----RLDATNATDETLL 155

Query: 207 GSFTNLGRDHIDY---HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              T +G DH +Y      + AY  A       ++ +    ++Y       +V +     
Sbjct: 156 SVITKIGLDHQEYLGNTLEEIAYEKAC------IMKQNGRCVVYDQQESVLDVFREVAEE 209

Query: 264 GCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               L   Y   F   K  ++ A HN      S + K+      L G +Q++NA +A   
Sbjct: 210 RNNKL---YICDFDEAKNIEINATHN------SFDWKNLHIETRLVGRYQLFNAQLALTA 260

Query: 322 CIAIGIDSALVLEHL---EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
              +  +  L  E +    K   +P RF+ +  N     +  D  H ++ ++ +  +I +
Sbjct: 261 IDVLRDELDLSDEDIINGFKNAYIPARFDVIRHNPT---VIYDGGHNADGVKALKSSIES 317

Query: 379 IT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +    +I+ V+G   D+D      +  I  +       T D+PR+   E ++ +I     
Sbjct: 318 VFGDKKIVFVYGVLKDKDYNDEIKL--IHENAKAFVTFTPDSPRALKAEDLKKQIEVYSD 375

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             + K N  +A+  AIE   K DV+++ G
Sbjct: 376 NVVAKSNVNDAVDYAIEHF-KDDVIIIFG 403


>gi|325067120|ref|ZP_08125793.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Actinomyces oris
           K20]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 29/157 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT GK++  S +  I    GL++  +G   T              P+     +  +
Sbjct: 139 LTLTGTDGKTTTVSMLSAILTAHGLTAPAVGNIGT--------------PV-----IEAV 179

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +     ++VE SS  L  H    +  +A +  NL  DH+D+H   +AY   K R++   
Sbjct: 180 LAGSADALAVELSSFQL--HTTRTLAPLASACLNLAADHLDWHGGLEAYAQDKARVYS-- 235

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY 272
             +   A IY  AD A    V +     GCR  +VG+
Sbjct: 236 --RTRLAAIYNLADSATEDMVRQADVVEGCR--AVGF 268


>gi|312136564|ref|YP_004003901.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224283|gb|ADP77139.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 492

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F VYNAL AA     + ID   ++E L     VPGR E +    +   I +DYAH   
Sbjct: 317 GIFNVYNALAAAAAAFILKIDFDKIIEGLNTFKKVPGRMEKI---YKKPEIIIDYAHNVA 373

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS----- 422
            ++ IL+ I+    GR+IVV     +    +   + KI L  ADI I    + R      
Sbjct: 374 GVKAILQTIK--PKGRLIVVNTISSESGIKEDIKIAKI-LSSADILIPASYSARKASKYT 430

Query: 423 -------EDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +  EK   +   G   F +E     EAI+ A+   +K D +++ G+G
Sbjct: 431 NTTVINVKSTEKKFKKGTLGASKFQVE-----EAIKKALSYADKNDTILIIGEG 479


>gi|76801390|ref|YP_326398.1| folylpolyglutamate synthase / dihydropteroate synthase
           [Natronomonas pharaonis DSM 2160]
 gi|76557255|emb|CAI48830.1| folylpolyglutamate synthase / dihydropteroate synthase
           [Natronomonas pharaonis DSM 2160]
          Length = 812

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 16/182 (8%)

Query: 293 ISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFV 349
           + ++G D+  +   PL G  Q  NA VAA L   +G + +A +   L   H  PGRFE +
Sbjct: 236 VVLDGDDWHVETALPLLGAHQARNAGVAAALARTVGNVSTADIERGLRNAH-WPGRFEVM 294

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
              +R   + +D AH   S   +   + T     + +VFG   D+D       G + AL 
Sbjct: 295 ---NREPLVVLDGAHNPGSCAGVAATLSTFAYDDLHLVFGAMCDKDH-----RGMVEALP 346

Query: 409 LADIAIVT-DDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A +A     D  R+E  + + A  E + G       G   +A+  A+      D ++V 
Sbjct: 347 DATVAYTCRPDIQRAETADSLAAVFEAVGGAAAVEPVGAVEDAVERALAAAGSDDAVIVC 406

Query: 466 GK 467
           G 
Sbjct: 407 GS 408


>gi|319789935|ref|YP_004151568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114437|gb|ADU96927.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 113/293 (38%), Gaps = 68/293 (23%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174
           + ++VTGT+GKS+  + +    + SG  SF  G     +S+FA D    T    + A  L
Sbjct: 81  SFISVTGTNGKSTTTAVIYHALKLSGRESFIGGNYGIPLSTFALD----TTEESFTALEL 136

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S    + +T      S                  F N+  DH++ + + + Y  AK+RL 
Sbjct: 137 SSFQIEDLTSFRSRVS-----------------VFLNVTPDHLNRYSSFEEYREAKLRLL 179

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +           ++D               C V++ G    F HLK    I+     T S
Sbjct: 180 D-----------FSD---------------CAVVN-GDDPSFKHLKGKLGIYTFSVSTDS 212

Query: 295 -----VEGKDFDFL--------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                VEG+   F          PL G   + N L A      +G+    + E  +    
Sbjct: 213 GADARVEGELLVFSGYRIPYRELPLKGIHNLENYLAALVALAVVGLSEEEIYEGFKAFKG 272

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           +P R E VG   +GG ++V+ +  +N   M     + + S R +V+   G D+
Sbjct: 273 LPHRCEVVG--RKGGVVFVNDSKATNPDAM----KKALESFRSVVLIAGGSDK 319


>gi|120555365|ref|YP_959716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
 gi|158513048|sp|A1U3G0|MURD_MARAV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120325214|gb|ABM19529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
          Length = 446

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 26/138 (18%)

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V + V ++ + +G  + Q+G             + TP       AL  L  Q
Sbjct: 115 TGSNGKTTVTTLVGEMARAAG-RNVQVG-----------GNIGTP-------ALDLLE-Q 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G     +E SS  L+    + +  +A +  N+  DH+D +  + AYF AK R++      
Sbjct: 155 GADLYVLELSSFQLETT--EELGALAATVLNVSDDHMDRYPDKMAYFQAKQRIYRGC--- 209

Query: 241 ESPAIIYADDAYSKEVMK 258
              AI+  DDA S  + +
Sbjct: 210 -KNAIVNLDDALSTPMAR 226


>gi|152979588|ref|YP_001345217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus succinogenes 130Z]
 gi|150841311|gb|ABR75282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           succinogenes 130Z]
          Length = 437

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 43/238 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ +  GL +   G             +  P       ALS 
Sbjct: 110 VVAITGSNGKSTVTTLVAEMAKADGLRAGMGG------------NIGIP-------ALSL 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L ++   +V +E SS  L+     G++  A +  N+  DH++ +   + Y  AK++++  
Sbjct: 151 LDAEYDLYV-LELSSFQLETTF--GLRARAATVLNVTEDHMNRYADLEDYRQAKLKIY-- 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  A+I A+D+ +++  +RA     R  S G      H        N +Q  ++  
Sbjct: 206 --ANAETAVINAEDSLTQDNKQRAK----RQFSFGES----HADYWLKTENGKQYLMA-- 253

Query: 297 GKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           G+  + + P     + G     NAL +  L  A+G+ +  +   L     +  RF+  
Sbjct: 254 GR--EVVLPCDEVKISGRHNYMNALASIALAQAVGVKTHGIRTALRTFTGLDHRFQLA 309


>gi|42783594|ref|NP_980841.1| folylpolyglutamate synthase [Bacillus cereus ATCC 10987]
 gi|42739523|gb|AAS43449.1| folylpolyglutamate synthase [Bacillus cereus ATCC 10987]
          Length = 433

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEHFDFTCPFASFEDVRISMKGSHQVRNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K + +      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+   +K+ +          E  N  EAI T +EML
Sbjct: 352 --HNMVGQLESIADEIIFTTFAFDRAISADKLASYAKEESKLVFE--NWKEAIDTKVEML 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 GENDVFIITG 417


>gi|2463563|dbj|BAA22556.1| MURD [Staphylococcus aureus]
          Length = 269

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 30/124 (24%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++V S +  + ++S L+    G    ++S  AQ+ + T     YL   LS
Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                G+     H+++                      TN+   H+DYH+  + Y NAK 
Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207

Query: 232 RLFE 235
           ++++
Sbjct: 208 QIYK 211


>gi|254246422|ref|ZP_04939743.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871198|gb|EAY62914.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 468

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 147/375 (39%), Gaps = 32/375 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+DSR +  G +FVA+ G + D H F+          +    A +     A      
Sbjct: 27  DRVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPADVAM 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P++    TR  L   A     + P  ++AVTG++GK++V   +  I       +  +G  
Sbjct: 79  PMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIF------AAAVGAD 132

Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           + +++    +N +  P  +    A   L+    G+ H      +  L +     + L+  
Sbjct: 133 ARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNH---PGETEVLARLTAPTVALV-- 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A       +    LP +  A+  ADDAY+   + R    G R+
Sbjct: 188 --NNAQREHQEFMATVEAVALEHAAVIHA-LPPDGVAVFPADDAYAG--IWRVAATGNRI 242

Query: 268 LSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L    +  +  +  ++    +  ++ I              GE    NAL A    +  G
Sbjct: 243 LDFALHDAERQNDAQIVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAATAAALGAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
           +  + + + LE    V GR +       S  G   VD  + +N  S+   +  +    + 
Sbjct: 303 VALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDVLAAHPAP 362

Query: 383 RIIVVFGCGGDRDQG 397
           R++V+   G   D+G
Sbjct: 363 RVLVIGDMGEVGDEG 377


>gi|261867478|ref|YP_003255400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412810|gb|ACX82181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 434

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 26/143 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +GL   ++G    I                   ALS 
Sbjct: 106 IVAITGSNGKSTVTTLVAEMAKAAGL---RVGMGGNIG----------------IPALSL 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+ Q   +V +E SS  L+      +K +A +  N+  DH++ +   Q Y +AK+ ++  
Sbjct: 147 LNQQHDLYV-LELSSFQLETTY--SLKAVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNH 203

Query: 237 LLPKESPAIIYADDAYSKEVMKR 259
                  A+I A+DA +    +R
Sbjct: 204 C----QTAVINAEDALTLPTTQR 222


>gi|198274199|ref|ZP_03206731.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
 gi|198272874|gb|EDY97143.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSA 76
           + I  +  R  + N +++DSRH   G +F+A+ G   +G+ F  Q++AQG   A+V    
Sbjct: 1   MDIEELYSRFTECNGLTTDSRHCPEGSMFLALKGETFNGNAFAAQSLAQGCRYAVVDEPQ 60

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           Y+  +       N  IL+V+N  + L   A+
Sbjct: 61  YASPE-------NPYILLVENCLQTLQQLAN 84


>gi|332829615|gb|EGK02261.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 444

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 48/288 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           ++ +TG++GK++  S +  I + +GL+   +G    I  SFA+                 
Sbjct: 104 MICITGSNGKTTTTSLIYHILKSAGLN---VGLGGNIGRSFARQ---------------- 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
            ++ +   +  +E SS  L+   +   K       N+  DH+D Y    Q Y +AKMR+ 
Sbjct: 145 -VAEENYDYYVLELSSFQLE--NMYSFKADIAILLNITPDHLDRYDHDIQKYIDAKMRIV 201

Query: 235 EELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQ 290
           +     E+ A I+   D   SKE+ K        ++S G Q  F   K     A  N  +
Sbjct: 202 QN--QTEADAFIFWEEDPIVSKEIKK--------LVSKGKQYTFAEHKVGNAIAYLNDHE 251

Query: 291 VTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + I+     F     L  L G   +YN+L +      + I    +   L     V  R E
Sbjct: 252 IDINTPNSAFIMEQDLLALEGTHNLYNSLASGIAAKLLDITDDNLRHSLSDFQGVEHRLE 311

Query: 348 FVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDR 394
            V    +G +   D   T+ NS    L++++T    +++++ G G D+
Sbjct: 312 KVA-KVKGIQFINDSKATNVNSCWYALQSMKT----KVVLILG-GTDK 353


>gi|269219537|ref|ZP_06163391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210779|gb|EEZ77119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 472

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 15/129 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P      +I+ +++D+R +  G +F AI G + DG      A++ GA A+V S      D
Sbjct: 22  PPDVAREQISSLTADTRTVSGGEVFAAIKGARVDGAELAGAALSAGARAVVTS------D 75

Query: 82  FSATIRSNTP---ILVVDNTRKFLSLFA------SRLYGKHPENILAVTGTSGKSSVASF 132
            S  + S      ++VVD+  K +   A      +R  G     ++AVTG+ GK++V   
Sbjct: 76  PSTAVASGADPARVIVVDDVEKAIGALARANLQRARAEGNPALKVVAVTGSVGKTTVKDL 135

Query: 133 VQQICQRSG 141
           +  + +  G
Sbjct: 136 LASLVESRG 144


>gi|262280495|ref|ZP_06058279.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|299768392|ref|YP_003730418.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
 gi|262258273|gb|EEY77007.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|298698480|gb|ADI89045.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 8/192 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E+M R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREIMPRV- 246

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
             G  V++ G+ +   I    V     +   T+  +G++        PG   + NAL A 
Sbjct: 247 --GRPVITYGFNEDNDIRAIDVEQDGMRSHFTVLRKGREPLRLTINQPGMHNILNALAAI 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
           G+    G+    +   L     V  RF+  G         ++  DY H    +E  +K  
Sbjct: 305 GVATDEGVSDDAISRALAGFSGVGRRFQVQGEFELADGNVKLVDDYGHHPKEVEATIKAA 364

Query: 377 RTITSGRIIVVF 388
           R     R +V+ 
Sbjct: 365 RQSHPDRRLVML 376


>gi|219849960|ref|YP_002464393.1| FolC bifunctional protein [Chloroflexus aggregans DSM 9485]
 gi|219544219|gb|ACL25957.1| FolC bifunctional protein [Chloroflexus aggregans DSM 9485]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 74/188 (39%), Gaps = 28/188 (14%)

Query: 297 GKDFDFLFPLP-------GEFQVYNALVAAGLCI-----AIGIDSALVLEHLEKLHVVPG 344
           G      +P P       G FQ  NA +A G  +      I ID A +   L +    PG
Sbjct: 243 GTTTRLAYPAPPQPGKLHGTFQRENARLAMGAALLLRGQGIAIDDAAIRRGLAEAWW-PG 301

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMG 403
           RFE +    R   I +D AH  +S   + + I + +   R I+V G   D+D        
Sbjct: 302 RFEVIDGRPR---ILIDGAHNGDSAVKLWQAIEQELPHRRFILVLGTSRDKDIAAIAAAL 358

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNK 458
               D   I I    +P++ D ++I AE    +  F      I     EAI TA  +   
Sbjct: 359 APHAD--HIIITRSSHPKAMDLDRIAAE----VEPFASAPMTIVPVVAEAIATARTLAGP 412

Query: 459 QDVLVVAG 466
            D++ V G
Sbjct: 413 ADLICVTG 420


>gi|66047328|ref|YP_237169.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500775|sp|Q4ZNZ1|MURC_PSEU2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|63258035|gb|AAY39131.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 486

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 168/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 219 PFYGLAVMCIDDPVVREILPLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 275 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 324

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 325 FQVYGELPVDGGHVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQP--HRFSRTRDL 382

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 383 YDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQSGQLDPIYIERG--VELAP 440

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 441 LVKPLLRAGDILLCQGAG 458


>gi|116626350|ref|YP_828506.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|123319314|sp|Q01Q49|MURC_SOLUE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116229512|gb|ABJ88221.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 472

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 119/329 (36%), Gaps = 44/329 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVSSA   Q+          I V+        L   + YG      +AV G+ GK
Sbjct: 75  GARALVVSSAVDEQNPEVQEARRISIPVIPRGELLAELMRLK-YG------IAVAGSHGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    I   +GL      PT  +                       + + G ++  
Sbjct: 128 TTTTSMAATILNYAGLD-----PTVVVGG--------------------RVGTMGGSNAR 162

Query: 187 VEASSH-GLDQHRLDG--IKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  S    ++    DG  +KL  I    TN+ R+H+D++    A   A    F   +P  
Sbjct: 163 VGHSDFLVVESDESDGSFLKLAPIIAVVTNVDREHLDHYPDLDA-IRAAFLEFVNKVPFY 221

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF 300
              I+  DDA  + ++        R ++ G   +  +    +       +  +     D 
Sbjct: 222 GAVIVCLDDANVQGLLPEIRR---RTITYGTTAQADMEAGDISCGPFASEFRLRYRTADL 278

Query: 301 D-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   +PG   V NA+ A  + + + +    + E LE    V  RF+  G   RG  + 
Sbjct: 279 GRFRLHIPGRHNVLNAMAAIAVAMELEVKPDTIREALETFSGVDRRFQLRG-QERGIAVV 337

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            DY H    +   L   R     RI V+F
Sbjct: 338 DDYGHHPTEIRATLDGARQCGFRRIHVLF 366


>gi|187732828|ref|YP_001878898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii CDC 3083-94]
 gi|187429820|gb|ACD09094.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           CDC 3083-94]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L ++   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDAECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|330981215|gb|EGH79318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 460

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 168/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 49  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 101

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 102 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 158

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 159 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 192

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 193 PFYGLAVMCIDDPVVREILPLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 248

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 249 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 298

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 299 FQVYGELPVDGGNVMLVDDYGHHPREVAAVISAVRGGWPDRRLVMVYQP--HRFSRTRDL 356

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 357 YDDFVQVLADANVLLLMEVYPAGEEPVPGADSRNLCHSIRQRGQLDPIYIERG--VELAP 414

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 415 LVKPLLRAGDILLCQGAG 432


>gi|330895226|gb|EGH27564.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 486

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 168/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 219 PFYGLAVMCIDDPVVREILPLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 275 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 324

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 325 FQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQP--HRFSRTRDL 382

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 383 YDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAP 440

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 441 LVKPLLRAGDILLCQGAG 458


>gi|307544553|ref|YP_003897032.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
 gi|307216577|emb|CBV41847.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
          Length = 507

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 17/190 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+  +             F   LP    A++  DDA  + +++R +    + ++
Sbjct: 215 TNIDADHMATYGGDFERLKGTFIEFLHNLPFYGLAVLCIDDANVRGLIERVNR---QFVT 271

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL------PGEFQVYNALVAAGLCI 323
            G+     +  +    H  +   +S   +  D L PL      PGE    NA+ A  +  
Sbjct: 272 YGFSEDADYRLENFVQHGGE---VSFIARRPDGLAPLEVRLAMPGEHNALNAMAAIAVAS 328

Query: 324 AIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYV-DYAHTSNSLEMILKNIRT 378
             G++ A +L  L     V  RF+    F      G  + V DY H    +EM++K +R 
Sbjct: 329 DAGVEDAAILRGLASFAGVGRRFQVHGHFASPQGEGEVMLVDDYGHHPREVEMVIKAVRE 388

Query: 379 ITSGRIIVVF 388
               R +V+ 
Sbjct: 389 GWPERRLVML 398


>gi|289209363|ref|YP_003461429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
 gi|288944994|gb|ADC72693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
          Length = 448

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 29/160 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V +I   +G               A      TP       AL  
Sbjct: 109 VIAITGSNGKSTVTALVGEILTAAG------------RKVAIGGNFGTP-------ALDL 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L      +V +E SS  L+  R + +K    +  N+  DH+D +    AY  AK R+ + 
Sbjct: 150 LDPVVEVYV-LELSSFQLE--RSEQLKPDGAAILNISPDHMDRYPDLAAYIQAKARILD- 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
              + +  ++  DD + +E+      AG RV+S G     
Sbjct: 206 ---RAARGVLNRDDPWLREL---PLPAGLRVVSFGLDAPL 239


>gi|110640090|ref|YP_680300.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406]
          Length = 842

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 139/361 (38%), Gaps = 38/361 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHL 58
           MK  D+   + P ++    I         I ++  DSR + A  G +F AI G   DGH 
Sbjct: 21  MKSIDISVNELPGIVQGECIQQSTEPNTFIKQLVIDSRKLMAPAGAVFFAIDGKHHDGHA 80

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            I +   +G    +V  + SL +   +A IR  + +          +L A   Y +   +
Sbjct: 81  HITEMYKKGVRIFIVEKSISLNEIPQAACIRVKSSVS---------ALQACAAYRRKQLD 131

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           I  +A+TG++ K+ V  ++ Q    +   S    P S       ++++  P  ++   AL
Sbjct: 132 IPIVAITGSNAKTIVKEWLSQTV--AADYSVVKSPRS------YNSQIGVPLSVW---AL 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   + G+    +  +       ++  I+   G FTN+G  H    + ++     K++LF
Sbjct: 181 NERHTIGIFEAGISTTKEMQALQKV--IEPTIGIFTNIGSAHDKGFKNREEKIQEKLKLF 238

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                 +   +IY  D   +E+            +   Q     ++   A  +  Q  I 
Sbjct: 239 -----ADCKVVIYCSD--HEEIHAEITAQHLPTFNWSLQSSAT-IEYSIAAKDSFQTQIE 290

Query: 295 VEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           V+ K+    F LP   +  + NAL  A     +G     V   +  L  V  R E    N
Sbjct: 291 VKTKEHQGFFYLPFVDDASIENALHVATTLFYLGYSIQEVSRKISGLQAVGMRLELKEAN 350

Query: 353 S 353
           +
Sbjct: 351 N 351


>gi|78049108|ref|YP_365283.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037538|emb|CAJ25283.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 452

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 138/346 (39%), Gaps = 55/346 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           + P  I+  A  +VV +A S        R N  +  V+D  R++ S    L    L G+ 
Sbjct: 54  YAPSNISPDATDVVVGNALS--------RGNAAVEAVLDAGRRYTSGAQWLAEQVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + LAV GT GK++  + +  + + +G +     P   I   A+D              
Sbjct: 105 --DTLAVAGTHGKTTTTTILSYLLEAAGRA-----PGFLIGGVAEDF------------G 145

Query: 174 LSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +S    QG   V VEA  +       + +    + +     NL  DH D      A    
Sbjct: 146 VSARLGQGREFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAI--- 201

Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCA 284
             R F  L+   P     I+  +DA+  EV+      GC   V   G+        ++ A
Sbjct: 202 -QRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTPVERFGFDASLDWSARLIA 256

Query: 285 IHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +    T+   G +   + +PL G   V N L A     A+G+D A V+  L +   V 
Sbjct: 257 A-DGSAFTVLHRGVEIGQVQWPLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVK 315

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            R E +G+ +R   +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 316 RRLEVIGS-ARAITVYDDFAHHPTAIATTLQGLRAKVGAARVVVAM 360


>gi|254673384|emb|CBA08673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha275]
 gi|325208769|gb|ADZ04221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 452

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|163746132|ref|ZP_02153491.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
 gi|161380877|gb|EDQ05287.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
          Length = 472

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 133/344 (38%), Gaps = 50/344 (14%)

Query: 56  GHLFIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           G +F  QA    +GA  IV+SSA    +          + VV        L   RL    
Sbjct: 58  GRIFEGQAAENIEGAAVIVISSAIKPGNAELDEARRRGLPVVRRAEMLAELM--RL---- 111

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++ +AV GT GK++  + V ++    G+    +     I ++  + R+           
Sbjct: 112 -KSNIAVAGTHGKTTTTTLVAELLVAGGIDPTVVN-GGIIHAYGSNARM----------- 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI----DYHQTQQAYFNA 229
                 QG   V VEA       +RL     I    TN+  +H+    D+   +Q + N 
Sbjct: 159 -----GQGEWMV-VEADESDGTFNRLPATIAI---VTNIDPEHMEHWGDFDTLRQGFLN- 208

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   +P    A+   D    + ++ +  +   RV++ G+  +     +   +H K 
Sbjct: 209 ----FVSNIPFYGLAVCCTDHPEVQSLVGKLTDR--RVMTYGFNAQAD--VRAVGLHYKD 260

Query: 290 QVT---ISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            V    + ++ +D    +   P+PG+  V NAL A  +   +G+    +   L     V 
Sbjct: 261 GVAHFDVHLQSEDMVIENCALPMPGDHNVSNALAAVTVARHLGMKLEQIRAALGSFGGVN 320

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            RF  VG    G  +  DY H    +  +LK  R  + GR+I V
Sbjct: 321 RRFTRVG-EVDGVTVIDDYGHHPVEISAVLKAARQASKGRVIAV 363


>gi|87122626|ref|ZP_01078503.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
 gi|86162084|gb|EAQ63372.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
          Length = 478

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 118/325 (36%), Gaps = 51/325 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A  IVVS+A ++++          I +V        L   R       + +AV GT G
Sbjct: 74  ESAHVIVVSTAINIENPEIKWGKENRIPIVRRAEMLAELMRYR-------HGIAVAGTHG 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +   +G +     PT     F    RLT+        +  YL ++     
Sbjct: 127 KTTTTSLMASVLAATGDA-----PT-----FVIGGRLTSAGTNAQLGSSKYLVAEAD--- 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             +AS   L  H        +   TN+  DH+D +             F   LP    A+
Sbjct: 174 ESDASFLHLQPH--------SAIVTNIDEDHMDTYGGDFEKVKHTFVEFLHNLPFYGMAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVG-------YQGKFIHLKKVCAI--HNKQQVTISVE 296
           +  DD   +E++ +       +L+ G       Y    +   + C    H      I + 
Sbjct: 226 LCVDDENVREILPQVSRP---ILTYGIEHEADFYATDLVQTGRYCEFVAHRPNLEPIRIR 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNS 353
                   P+PG+  V NAL    +   +G+++  +   L     V  RF+    +    
Sbjct: 283 -------LPMPGKHNVLNALATIAVATDLGVEAVAIQAGLMGFEGVGRRFQEQSPLALPK 335

Query: 354 RGGRIYV-DYAHTSNSLEMILKNIR 377
            G  +++ DY H    +E+ +  IR
Sbjct: 336 SGEVMFIDDYGHHPREVEVTIDAIR 360


>gi|84516388|ref|ZP_01003747.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
 gi|84509424|gb|EAQ05882.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
          Length = 471

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 126/336 (37%), Gaps = 58/336 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +V+SSA    +        T + VV        L   RL     ++ +AV GT GK
Sbjct: 76  GAEVVVISSAIKPGNPELDAARATGLPVVRRADMLAELM--RL-----KSNVAVAGTHGK 128

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V  +    G+    I     I ++  + R+                 QG   V 
Sbjct: 129 TTTTTMVAALLDEGGIDPTVIN-GGIIHAYGSNARM----------------GQGEWMV- 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT----QQAYFNAKMRLFEELLPKES 242
           VEA       +RL     I    TN+  +H+++  T    ++ +++     F   +P   
Sbjct: 171 VEADESDGTFNRLPATIAI---VTNIDPEHMEHWGTIENLRKGFYD-----FVSNIPFYG 222

Query: 243 PAIIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            A+   D    + ++ R  +           A  R +++ Y+    H     A+ ++ QV
Sbjct: 223 LAVCCTDHPEVQALVGRITDRRVVTFGFNAQADVRAINLTYKAGVAHFD--IALQSEDQV 280

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                        P+PG+  V NAL A  +   +G+    +   L     V  RF  V  
Sbjct: 281 IAGCS-------LPMPGDHNVSNALAAVAVARHLGLKKDEIRAALAGFGGVNRRFTKV-A 332

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              G  I  DY H    +  +L+  R  T+GR+I V
Sbjct: 333 EVNGVTIIDDYGHHPVEIAAVLRAARQATTGRVIAV 368


>gi|89093868|ref|ZP_01166813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanospirillum sp. MED92]
 gi|89081754|gb|EAR60981.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanospirillum sp. MED92]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 117/284 (41%), Gaps = 42/284 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK++ ++ +  I + +G+   F IG      +F    R+   SP ++ +A  
Sbjct: 93  VLAVSGTHGKTTTSTMLAWILEHAGMQPGFLIGGVPL--NFGISARVGE-SPFFVIEADE 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH---QTQQAYFNAKMR 232
           Y ++        +  S  +  H    +        NL  DH D        Q  F+  +R
Sbjct: 150 YDTA------FFDKRSKFVHYHPRTLV------MNNLEYDHADIFPDLAAIQRQFHHVVR 197

Query: 233 LF----EELLPKESPAI--IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--A 284
           +     + +LP+   A+  +    A+S  V     N  C      +Q + +     C   
Sbjct: 198 IVPGNGQIILPQGESALDEVLEMGAWSPVVRTSLQNDDCE-----WQARLLSEDGRCFEV 252

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +H       +V+G      + + G+  V N L+A      +G+     +E L +   V  
Sbjct: 253 LHQG-----AVQGV---VNWSMTGKHSVNNGLIAIAAARNVGVQPVHAIEALNEFGGVKR 304

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
           R E +G    G ++Y D+AH   ++E  L+ IR  +   +++ V
Sbjct: 305 RMELLG-EVDGIKVYDDFAHHPTAIETTLEGIRAQVGEAKVVAV 347


>gi|330950223|gb|EGH50483.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae Cit 7]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 168/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 47  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 99

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 100 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 157 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 190

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 191 PFYGLAVMCIDDPVVREILPLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 246

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 247 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 296

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 297 FQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQP--HRFSRTRDL 354

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 355 YDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAP 412

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 413 LVKPLLRAGDILLCQGAG 430


>gi|242239991|ref|YP_002988172.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Dickeya dadantii Ech703]
 gi|242132048|gb|ACS86350.1| FolC bifunctional protein [Dickeya dadantii Ech703]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLP       AL  +GL     ID  ++   L     +PGRF+ V        + +D AH
Sbjct: 254 PLPNAATALAALQVSGL----DIDEDIIRLGLRNA-ALPGRFQIVREKPL---LILDVAH 305

Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD-DNP 420
             ++   +   +  +   GR+ +V G   D+D     I G +A    LAD       D P
Sbjct: 306 NPHAAGYLASRLNALPRYGRVRIVIGMLADKD-----IPGTLAYLKPLADDWYCAPLDGP 360

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI------ 474
           R    E++   +     G  +  +   A R A++    QD++VV G  H   H+      
Sbjct: 361 RGAGVEQLACHLA----GCGQYADVASAWRQAMQDAGPQDIVVVCGSFHTVAHVMEALEG 416

Query: 475 -VTNGE 479
            VT+GE
Sbjct: 417 SVTHGE 422


>gi|121635450|ref|YP_975695.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
 gi|120867156|emb|CAM10923.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
          Length = 479

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 35  FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 90

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 91  AVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEML 146

Query: 134 QQICQR 139
             + +R
Sbjct: 147 AAVLRR 152


>gi|282880606|ref|ZP_06289312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305501|gb|EFA97555.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 122/287 (42%), Gaps = 43/287 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   +  G    I           P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKAAG---YDAGLAGNIGRSLALQVAEDPHEYYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   K       N+  DH+D Y    Q Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYKFKADIAILLNITPDHLDRYDNCMQNYVDAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K+S  I + DD   K  +++       + +V  Q  F  LK+  +I   ++   ++
Sbjct: 203 NQTEKDS-FIYWNDDPIIKRELQKYD-----IKAV--QCPFSELKEKGSIGYIEEGQYTI 254

Query: 296 EGKD-FDF---LFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
           E    F+       L G+  VYN+L AAG+   I GI + ++ + L     V  R E V 
Sbjct: 255 EKPTPFNMEQEALSLTGKHNVYNSL-AAGIATDIAGIRNDVIRKSLSDFSGVEHRLEKVC 313

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               GG  Y++ +  +N ++     + ++ +  ++++    G +D+G
Sbjct: 314 --KVGGVEYINDSKATN-VDACWYALESMNTPTVLIL----GGKDKG 353


>gi|152990837|ref|YP_001356559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
 gi|151422698|dbj|BAF70202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
          Length = 474

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 129/309 (41%), Gaps = 46/309 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKA 173
            I+AVT + GK+S+ +F+ Q+ + S          +T++   +D     P    +Y+ +A
Sbjct: 155 TIIAVTASYGKTSIKNFIYQLLKDSYHVYKTPRSVNTLAGIIKDINTALPQVCEVYVVEA 214

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +G     +   +  L+ H              +G  HI+Y +T +     K+ +
Sbjct: 215 GA--RERG----DILEITKFLNHHY--------AVVGKVGPQHIEYFKTLENIIATKLEI 260

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQ 289
                             +SK + K     G   L V    KF+    ++K V A  +  
Sbjct: 261 L-----------------HSKRLKKAFLWDG---LPVKDDPKFVKFGSNIKNVKADLDGV 300

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              + ++G+ F F  P+ G F  +N   A  +   +GID A + + + +L  V  R + +
Sbjct: 301 SWDLELQGEIFHFQAPILGGFNAFNITAAILVAKELGIDMATLQKRVSQLKGVEHRLQRI 360

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIAL 407
                GG++ +D +   N LE ++ +   + +  GR +VV     + D+     + K   
Sbjct: 361 ---EAGGKVIIDDSFNGN-LEGMIASYELVKNYPGRKVVVTPGIVESDEKSNIELAKKIN 416

Query: 408 DLADIAIVT 416
           ++ D+AI+T
Sbjct: 417 EVFDLAIIT 425


>gi|71909112|ref|YP_286699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
 gi|118595653|sp|Q47AA2|MURD_DECAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71848733|gb|AAZ48229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
          Length = 450

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 128/303 (42%), Gaps = 46/303 (15%)

Query: 102 LSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           + LFA  +  + P + I+A+TG++GK++  +    +   +G+ +   G    IS  A D 
Sbjct: 95  IELFADGVREQVPNSQIIAITGSNGKTTTTALTAHLLNGAGVPAIACG---NISPSALDA 151

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            +        A AL  +    ++   +E + H         +   A +  N+  DH+D +
Sbjct: 152 LMDAQD----AGALPQVWVVELSSFQLETTHH---------LNAAAATVLNVSEDHLDRY 198

Query: 221 QTQQA-YFNAKMRLFEELLPKESPAIIYADDAYS-------KEVMKRAHNAGCRVLSVGY 272
           +   A Y  AK R+F+     +   ++  DD +S       ++++    NA  R +  GY
Sbjct: 199 EGSLANYAAAKSRVFQ----GKGVMVLNRDDDWSMANGRCGRKMVTFGLNAAPRGVDYGY 254

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                      AI   +   ++++         L G     NA+ A  LC AIG+D   +
Sbjct: 255 ADG--------AIWRGKDKLVAIDA------LKLSGLHNAANAMAALALCEAIGVDPLRL 300

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           +E L+    +P R E V     GG +YVD +  +N +   L  I  +     IV+ G G 
Sbjct: 301 IEPLKGFSGLPHRVETVA--EIGGVLYVDDSKGTN-VGATLAAIEGMGRKVAIVLGGDGK 357

Query: 393 DRD 395
            +D
Sbjct: 358 GQD 360


>gi|325496024|gb|EGC93883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ECD227]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L ++   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDAECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
 gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
          Length = 825

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 152/377 (40%), Gaps = 58/377 (15%)

Query: 29  KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           KI  + +DSR +      +F A+   + DGH +I +   +G    VV+      +  A  
Sbjct: 23  KIGFILTDSRSLCFPEETLFFALKSGRNDGHRYILELYHRGVRNFVVT------EVPANY 76

Query: 87  RSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            S+ P    L V ++ + L   A R   +    I+ +TG++GK+ V  ++ Q      L 
Sbjct: 77  ASDYPQANFLKVVDSLESLQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQ------LL 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           S  +  T +  S+  ++++  P  ++L   L+  S  GV    +      L     D I+
Sbjct: 131 SDDLFVTRSPRSY--NSQVGVPLSVWL---LNEHSQVGVFEAGISQPGEMLVLR--DIIQ 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHN 262
                 TNLG  H +   +++A    K+ LF      ++  ++Y  DD+   + +    +
Sbjct: 184 PTIAVLTNLGDAHQENFVSREAKCKEKLVLFH-----DAKIVVYNGDDSLISDCVNALED 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------DFDFLFPLPGE 309
                    ++G+ ++    C+ HN      S+E K             +  +  P   +
Sbjct: 239 ---------FRGERLYWS--CSDHNAPFFVKSIEKKATATTITYIYKGIESWYSLPFIDD 287

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             + N+   A + + +G+    + E + +L  +  R E V     G  +  D Y    NS
Sbjct: 288 ASITNSFACAAVALTLGVSKDALDERMLQLEPIAMRLE-VKQGQHGCTLINDSYNSDINS 346

Query: 369 LEMILK--NIRTITSGR 383
           L++ L   N R    GR
Sbjct: 347 LDIALDFMNRRPDHQGR 363


>gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Chitinophaga pinensis DSM 2588]
 gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588]
          Length = 834

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 66/330 (20%), Positives = 138/330 (41%), Gaps = 64/330 (19%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F+ +V ++ + H +I +   +G    +VS       +    ++N  ILV D  +   +L
Sbjct: 41  LFIPLVSSRRNAHQYIQELYEKGVSNFIVSEPVPEGKYP---KANI-ILVKDTMQALHAL 96

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A      H   ++ +TG++GK+ V  ++ Q+ ++     + I      S  + ++++  
Sbjct: 97  VAYHRQQFHIP-VIGITGSNGKTIVKEWLYQLLEK----DYNI----VRSPKSYNSQIGV 147

Query: 165 PSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           P  ++  K    L+    G+       S  G  +H    I+   G FTN+G  H      
Sbjct: 148 PLSVWQMKPEHQLAIFEAGI-------SQPGEMEHLEKIIRPNIGIFTNIGEAH------ 194

Query: 223 QQAYFNAKMRLFEEL-LPKESPAIIYADDAYS-KEVMKRAHN------------------ 262
            + + N + ++ E+L L  +S  +IY+ D  +  E +   HN                  
Sbjct: 195 NEGFLNIRQKINEKLVLFSKSDLLIYSKDYLALNECVLNFHNLVGKKDNHEGGLQLFTWS 254

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R++SV    K  H  ++ A++    + I++         P   E  V NA+  
Sbjct: 255 RKTEADLRIISV---DKSEHHSRIDALYQTIPIHINI---------PFVDEGSVENAIHC 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             L + +G++ +++ + +++L  +  R E 
Sbjct: 303 WALMLHLGMEHSVIQQRMDQLGNIAMRLEL 332


>gi|148358874|ref|YP_001250081.1| bifunctional protein FolC [Legionella pneumophila str. Corby]
 gi|296106921|ref|YP_003618621.1| folylpolyglutamate synthase [Legionella pneumophila 2300/99 Alcoy]
 gi|148280647|gb|ABQ54735.1| FolC bifunctional protein [Legionella pneumophila str. Corby]
 gi|295648822|gb|ADG24669.1| folylpolyglutamate synthase [Legionella pneumophila 2300/99 Alcoy]
          Length = 428

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 132/324 (40%), Gaps = 57/324 (17%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-T 163
           A +L  + P   ++ V GT+GK S  + ++ I  +SG   F++G  ++      + R+  
Sbjct: 36  AQKLNLQRPNCKVITVAGTNGKGSTVTALETIYHQSG---FRVGTYTSPHLLVFNERIRI 92

Query: 164 TPSPIY---LAKALS------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             +PI    L KA S      Y ++     ++  A+     QH LD I L  G    L  
Sbjct: 93  NLTPIQDKDLCKAFSVIEEARYPTNLTYFEMATLAALWYFKQHDLDLIILEVGLGGRLDA 152

Query: 215 DH-----------IDYHQTQQAYFNAKMRL--FEE--LLPKESPAIIYADDAYSKEVMKR 259
            +           ID+    Q +    + L  +E+  +L K  P  IYAD +  K V++ 
Sbjct: 153 TNIVDTDLAIITTIDF--DHQNFLGDTLELIGYEKAGILRKNKP-FIYADLSPPKSVVEV 209

Query: 260 AHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           A   G      G    YQ +  H +  C            +GK F+ L     + Q+ +A
Sbjct: 210 ALQLGASSYLYGKDYFYQEEADHWEVTC------------QGKPFEQL--TRPKIQLRSA 255

Query: 316 LVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
             A   C  +  D  +  ++L+K   L  +PGR +     +    I  D +H   S+ ++
Sbjct: 256 AAAVMACHLMQNDLPVSYKNLKKAMELIYIPGRLQLQKGKT---DILYDVSHNPQSVRLL 312

Query: 373 LKNIRTIT-SGRIIVVFGCGGDRD 395
              I+ I   G+I  VF    D+D
Sbjct: 313 ADTIKKINVKGQIHAVFSALKDKD 336


>gi|30061655|ref|NP_835826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 2457T]
 gi|30039897|gb|AAP15631.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
 gi|313646529|gb|EFS10990.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 122/285 (42%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCR------EAQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDCHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NALVA  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|319941790|ref|ZP_08016112.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
 gi|319804723|gb|EFW01590.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
          Length = 465

 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 120/342 (35%), Gaps = 60/342 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+A++VSSA    +   T      I VV        L   R         +A+ G  G
Sbjct: 63  RGADAVIVSSAVKADNPEVTAARELDIPVVPRAVMLAELMRLR-------RGIAIAGAHG 115

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    GL  +F IG    ++S   + RL T    +L              
Sbjct: 116 KTTTTSLTASLLAAGGLDPTFVIG--GKLNSAGANARLGTGE--FLV------------- 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
               A +   D   L+   +IA + TN+  DH+D +        +    F   LP    A
Sbjct: 159 ----AEADESDASFLNLTPVIA-AVTNIDEDHMDTYGHDFEKLKSAFVDFLGRLPFYGVA 213

Query: 245 IIYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++  DD   + +  R          +H+A  R + V   G  +    +   H    V ++
Sbjct: 214 VLCMDDDNVRSIRPRVTKPVIGYGLSHDATVRAIDVTADGTRMRFTVLRPDHPPLPVVLN 273

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
                      LPG   V NAL A  +    G+    +   L +   V  RF   G    
Sbjct: 274 -----------LPGVHNVRNALAAVAIATLAGVKDEDIKRGLAEFKGVGRRFAQWGDIPI 322

Query: 352 NSRGGRIYV------DYAHTSNSLEMILKNIRTITSGRIIVV 387
               GRI        DY H  + +   L  +R    GR IVV
Sbjct: 323 QDADGRITGTFTLIDDYGHHPHEMAATLAAVRGAWPGRRIVV 364


>gi|258654962|ref|YP_003204118.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
 gi|258558187|gb|ACV81129.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
          Length = 914

 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 155/392 (39%), Gaps = 55/392 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK-ALS 175
           I+AVTGT+GK++ +  +  I +  G    ++G TST      D+RL   S     + A  
Sbjct: 506 IVAVTGTNGKTTCSRMIGHIFKSMGR---KVGMTST-DGVVIDDRLVIRSDASGPRSARM 561

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LF 234
            L +  V     E +  G+ +  L   +       N+  DH+           A+++ + 
Sbjct: 562 VLQNPRVDFAVFEVARGGILREGLGYPRNDVAVVLNVAPDHLGLRGIDTVEQLAQVKQVI 621

Query: 235 EELLPKESPAIIYADD--------AYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKK--- 281
            E +PK   A++ ADD        A S EV+  +     R++S      GK + L++   
Sbjct: 622 VEAVPKSGSAVLNADDPLVAGMRRACSGEVVWFSTEPDNRMISDHCRRGGKAVILERSDL 681

Query: 282 ---VCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIA----IGIDSA 330
              +  +H ++++ ++     +  L P        F V NA+ AA         +G    
Sbjct: 682 GELIVLVHGRRRMPLA-----YTHLVPATFGGKAMFNVQNAMAAAAAAYCAGAHLGDIRG 736

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL-------EMILKNIRTITSGR 383
            +       +  PGR     T  RG ++ VDY H + ++       +   ++  +    +
Sbjct: 737 GLRSFTPSYYSAPGRMNL--TEVRGVKVIVDYCHNAPAMVALGAFVDRFFEDSASWERPQ 794

Query: 384 IIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            I V    GD RDQ    +  + A     I +  D+  R   P +    I+ G      +
Sbjct: 795 RIGVIATAGDRRDQDMIDLGLEAAKHFDRIIVREDERLRGRAPGETAGLIVQGAKEAQAQ 854

Query: 443 GNR----------IEAIRTAIEMLNKQDVLVV 464
           G R          IEA + A+E  N  D+++V
Sbjct: 855 GGRVKQIEVVLDEIEATKVAVEWANPGDLVLV 886


>gi|320172821|gb|EFW48053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae CDC 74-1112]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L ++   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDAECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|269838017|ref|YP_003320245.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787280|gb|ACZ39423.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 18/176 (10%)

Query: 183 THVSVEASS---HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           T V +E SS    GL +H   G+       TN+  DH++ + +  AY  AK ++     P
Sbjct: 174 TPVVIELSSWQIEGLAEH---GLSPHVAVITNISEDHLNRYPSMAAYVEAKRQIARYQGP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   ++  DD  + E   R+  AG RV+  G  G         A  +  ++    +G +
Sbjct: 231 DDW-LVLNRDDPLAWE--SRSAGAG-RVVPFGMAGD----APAGAFRDGDRLVWRWDGSE 282

Query: 300 FDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + L    FPLPG+  V NAL AA   I  G D A V   L     VP R E V T
Sbjct: 283 VELLRRDEFPLPGDHAVANALAAAAAAILAGADPAQVRTGLLAATPVPHRQEIVAT 338


>gi|253988592|ref|YP_003039948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780042|emb|CAQ83203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photorhabdus
           asymbiotica]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 113/293 (38%), Gaps = 56/293 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L        ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 53  ADLIVVSPGIALATAELQAAADAGIEIVGDIELFCR--------EATTPIIAITGSNGKS 104

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G   +Q+G    I                   AL  L      +V +
Sbjct: 105 TVTSLVGEMAKAAG---WQVGVGGNIG----------------LPALELLKQSCQLYV-L 144

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D Y Q    Y  AK+R++ +        I+
Sbjct: 145 ELSSFQLETTY--SLKAAAATVLNVTEDHMDRYPQGLSQYRAAKLRVYHQ----AKRCIV 198

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---IHNKQQVTISVEGKDFDFL 303
              D  +            R +SVG       L    A   +HN Q +  + E K     
Sbjct: 199 NVQDTLTLP----ETGMDSRCVSVGVDCGDYQLDSENAFLKVHN-QSLLAANEIK----- 248

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNS 353
             L G     N LVA  L  A+GI        L  L V PG   RF+ V  N+
Sbjct: 249 --LTGRHNYVNGLVALALADAVGIPRE---ASLATLTVYPGLNHRFQLVHLNN 296


>gi|256020074|ref|ZP_05433939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella sp.
           D9]
 gi|300821907|ref|ZP_07102051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|309796078|ref|ZP_07690490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331666325|ref|ZP_08367206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331680662|ref|ZP_08381321.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332281224|ref|ZP_08393637.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
 gi|300525507|gb|EFK46576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|308120320|gb|EFO57582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331066536|gb|EGI38413.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331072125|gb|EGI43461.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332103576|gb|EGJ06922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L ++   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDAECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|237736132|ref|ZP_04566613.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium mortiferum ATCC
           9817]
 gi|229421685|gb|EEO36732.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium mortiferum ATCC
           9817]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 13/184 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR----AHNAGC 265
           TN+  DH++ H + +      ++ F + + + S  +    D    E+++       N   
Sbjct: 182 TNIEADHLENHGSLENI----IKSFSKFIDQTSKEVFICSDC---EILRGLAAIKENKKI 234

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIA 324
              S+  +   I+ + +     K    + ++G+    F   +PGE  + N+L    L + 
Sbjct: 235 TRYSIKDKTADIYAENIEVGEGKTSYDVVIKGEKIGRFTLYIPGEHNILNSLPVIYLALE 294

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G++   +    EK      R+E V  +  G RI  DYAH    ++  L+   +I   +I
Sbjct: 295 FGLEEKDIERAFEKFRGSKRRYE-VLYSGNGIRIIDDYAHHPTEIKATLQGATSIEDSKI 353

Query: 385 IVVF 388
            V+F
Sbjct: 354 TVIF 357


>gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 647

 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A++GT+GKS+V SF  Q+       +F  G    I     D  L      ++   L+ 
Sbjct: 226 IVAISGTNGKSTVCSFTAQLLASCDCRTFMGG---NIGKPLSDCALEFILAEHICGHLAD 282

Query: 177 LSSQGVTHVS-VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L        + VE SS+ LD      ++  A    NL  DH++ H++   Y  AK ++F 
Sbjct: 283 LGHHWPYDAAVVECSSYQLDHP--GTLRFDAACILNLTPDHLERHKSMANYATAKTQIFA 340

Query: 236 ELLPKESPAII 246
            L    + A++
Sbjct: 341 GLRGTHTLAVL 351


>gi|302185268|ref|ZP_07261941.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae 642]
          Length = 486

 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 168/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 219 PFYGLAVMCIDDPVVREILPLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 275 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 324

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 325 FQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQP--HRFSRTRDL 382

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 383 YDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAP 440

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 441 LVKPLLRAGDILLCQGAG 458


>gi|167040832|ref|YP_001663817.1| FolC bifunctional protein [Thermoanaerobacter sp. X514]
 gi|300914867|ref|ZP_07132183.1| FolC bifunctional protein [Thermoanaerobacter sp. X561]
 gi|307723899|ref|YP_003903650.1| FolC bifunctional protein [Thermoanaerobacter sp. X513]
 gi|166855072|gb|ABY93481.1| FolC bifunctional protein [Thermoanaerobacter sp. X514]
 gi|300889802|gb|EFK84948.1| FolC bifunctional protein [Thermoanaerobacter sp. X561]
 gi|307580960|gb|ADN54359.1| FolC bifunctional protein [Thermoanaerobacter sp. X513]
          Length = 429

 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 90/442 (20%), Positives = 160/442 (36%), Gaps = 121/442 (27%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L ++N RK L       Y  +P+    I+ V GT+GK S ++F+  I Q++G     +  
Sbjct: 20  LGLENIRKLLD------YMGNPQKSLKIIHVAGTNGKGSTSAFISNILQQAGYK-VALYT 72

Query: 150 TSTISSFAQDNRLT-------------------------------TPSPIYLAKALSYLS 178
           +  +  F +  R+                                T   +  A A  Y  
Sbjct: 73  SPYLEEFEERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFY 132

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-- 236
            + V  V +E    G    R D    I  S  ++    IDY  T +         +E+  
Sbjct: 133 DEKVDFVVLEVGLGG----RFDATNAIDSSLVSV-ITTIDYDHTDRLGHTLGEIAYEKAG 187

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           ++ ++   + +     + +V+  A    C V +               +  K  V I  +
Sbjct: 188 IIKQKGVVVSFYQQPEAMKVIIEA----CEVRNA-----------YLTVLEKSNVIIKEQ 232

Query: 297 GKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----- 342
             DF         D    L GE Q+YNA              AL +E +EKL +      
Sbjct: 233 NPDFQIFDYKKYKDLKITLLGEHQIYNA--------------ALAIESVEKLKMYGYEIT 278

Query: 343 -------------PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
                        PGR E +    +   + +D AH    + ++ ++++     ++I+V G
Sbjct: 279 EKDIREGLYRAKWPGRLEVM---RKKPYVVIDGAHNPQGMTVLKESLKLFKYDKLILVIG 335

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDD-----NPRSEDPEKIRAEIIHGIPGFIEKGN 444
              D+D  K   M  I +  A++ I T          SE  E+I  E +  I       N
Sbjct: 336 MLKDKDTQK---MLDIIVPEANMIITTTPISERAYKASELAERIEKEKVIAIE------N 386

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             EA++ A+++  ++D+++  G
Sbjct: 387 IEEAVKYALDIAKEEDMVLFCG 408


>gi|191167754|ref|ZP_03029561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
 gi|190902180|gb|EDV61922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L ++   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDAECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|325144955|gb|EGC67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M01-240013]
          Length = 479

 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 35  FICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 90

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 91  AVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEML 146

Query: 134 QQICQR 139
             + +R
Sbjct: 147 AAVLRR 152


>gi|323487300|ref|ZP_08092600.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
 gi|323399345|gb|EGA91743.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
          Length = 459

 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 147/381 (38%), Gaps = 58/381 (15%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           A+GA       A +++D      ++A I  + P  +    R    +  + L G+  +N  
Sbjct: 52  AKGAVVYYGQKAENIKDGIDAVVYTAAIHEDNPEFMEVKRRGIPMMSRAELLGQMMKNYR 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V +I   +  ++  I     ++S   + R+  P   ++ +A  
Sbjct: 112 EAIAIAGTHGKTTTTSMVTEIFMEAD-NNPTISVGGILNSIGGNIRVGGPE-FFVTEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S    + ++                       N+  DH+D+ +          R F 
Sbjct: 170 YTNSFLSFYPTMAV-------------------ILNIEEDHLDFFKDIDD-IRRSFRQFI 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTI 293
           E +P+    I+       +E+      A  +V++ G   +  +     V   + +    +
Sbjct: 210 EKVPENGTIIMNGTIENWRELTA---GAAGKVVTFGNSKENDYSFDAVVYDEYARPSFDL 266

Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++G+  + +   + GE  VYNAL A    IA+ ++S   LE   +     G  +F GTN
Sbjct: 267 YIKGEKKERISLGVQGEHNVYNALGA----IAVAMESGAGLEAAGR-----GLLKFTGTN 317

Query: 353 SR--------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            R        G  I  DYAH    +E  LK        RI   F          +  M +
Sbjct: 318 RRFEKKGELKGITIIDDYAHHPQEIEATLKAAENYPHKRICCAFQP--HTYTRTKAFMKE 375

Query: 405 I--ALDLADIAIVTDDNPRSE 423
              AL LAD  ++TD  P  E
Sbjct: 376 FAQALSLADCVMLTDIYPARE 396


>gi|71282429|ref|YP_271112.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
 gi|109892700|sp|Q47VR0|MURC_COLP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71148169|gb|AAZ28642.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
          Length = 503

 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 119/286 (41%), Gaps = 48/286 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  I  +  L  +F IG    ++S   + RL + S   +A+A   
Sbjct: 131 IAIAGTHGKTTTTSLIASIFAQGKLDPTFVIG--GLLNSAGTNARLGS-SRYLVAEADES 187

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH++ +Q           
Sbjct: 188 DASFLHLQPMVSV-----------------------ITNIDADHMETYQGDFEKLKDTYI 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--- 289
            F   LP    A++  D+   +E++ R      +V++ G+         V A++ +Q   
Sbjct: 225 EFLHNLPFYGLAVVCIDNPVVRELLPRISR---QVITYGFSKD----ADVRAVNYQQNGA 277

Query: 290 --QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               T+ VEG++  +    LPG+  V NAL    +    G++   + + L +   +  RF
Sbjct: 278 VSHFTVEVEGQEPLEMSVNLPGQHNVLNALAGVAVAKDEGVNDEAICKALTEFEGIGRRF 337

Query: 347 EFVG--TNSRGGRIYV-DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           E +   + + G  + V DY H  + ++  +  +R      R+++VF
Sbjct: 338 EKLTDFSTAAGDMVLVDDYGHHPSEVKATILAMRQGWPDKRLVMVF 383


>gi|114564956|ref|YP_752470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336249|gb|ABI73631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 25/136 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  K P  ++ +TG++GKS+V + V ++   +G             S A    
Sbjct: 97  VELFAREIADKKP-CVVGITGSNGKSTVTTLVYEMLLAAG------------KSVAIGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           + TP       AL  L      +V +E SS  L+  H L+    IA +  N+  DH+D +
Sbjct: 144 IGTP-------ALDLLPQNADFYV-LELSSFQLETTHSLN---CIAATCLNVSEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEE 236
                Y  AK+RL+ +
Sbjct: 193 SDLNTYREAKLRLYPQ 208


>gi|331696616|ref|YP_004332855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951305|gb|AEA25002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
          Length = 488

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 122/315 (38%), Gaps = 50/315 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-----------AEAIVVSS 75
           + ++  V  DSR I  G +F+A+ G + DGH F   A+A G           A A+VV  
Sbjct: 23  DERVTAVEFDSRAIGPGGLFLALPGERVDGHDFAAAAVAAGAAGVLAARAVDAPAVVVPP 82

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPEN--ILAVTGTSGKSSV 129
           A +       +  + P          L+  A      L    P    ++ VTG+SGK+S 
Sbjct: 83  AEARSGAGTYLAEHDPDGAGAAVLAALARLARHNVDALTAGGPPGLAVVGVTGSSGKTST 142

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVT 183
              +  +          +GPT +   SF  +N L  P     A A +      LS++G  
Sbjct: 143 KDLLAAVLA-------PLGPTVAPPGSF--NNELGHPWTALRADASTRHLVLELSARGPG 193

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H++           R+   ++  G   N+GR H+    + +A   AK  L E  LP    
Sbjct: 194 HIAALC--------RVAPPRI--GVVLNVGRAHLGEFGSPEAIAQAKGELVEA-LPAGGD 242

Query: 244 ---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
              A++ ADD     V+  A     R++SVG   G  +    V +   + +  +     +
Sbjct: 243 GGVAVLNADD---PAVIGMAPRTAARLVSVGRSAGATVRAVDVGSEAGRARFRLVSPAGE 299

Query: 300 FDFLFPLPGEFQVYN 314
            D    L G   V N
Sbjct: 300 ADVALRLVGTHHVGN 314


>gi|157373549|ref|YP_001472149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315923|gb|ABV35021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 50/297 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA R   +    ++ +TG++GKS+V + V ++ + +G++            +A    
Sbjct: 97  VELFA-RAVKERDACVIGITGSNGKSTVTTLVAEMAKAAGIN------------YAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220
           +  P        L  L S    +V +E SS  L+  H L+    I+ +  N+  DH+D +
Sbjct: 144 IGIP-------VLDLLQSDIELYV-LELSSFQLETTHSLN---CISATCLNISEDHMDRY 192

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
              +AY  AK+RL+ +       A+   +D  +K   K   N     LS+    ++    
Sbjct: 193 SDIEAYRQAKLRLYSQ----TRFALFNREDELTKP--KDPMNQNSFGLSLPDNDEW---- 242

Query: 281 KVCA---IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            VC    +H   +V IS++         L G     N + A  L    GI+ A ++E   
Sbjct: 243 GVCEGKIVHGSVEV-ISLQD------VALVGSHNHANLIAAMALAYQAGIEKAAMVEVAS 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGG 392
               +  RFE V   +R G  Y++ +  +N +   +  I  I+   G II++ G  G
Sbjct: 296 SFTGLEHRFEMV--VNRNGVAYINDSKATN-VGATVAAIEGISEHLGDIILIAGGDG 349


>gi|82542692|ref|YP_406639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii Sb227]
 gi|193065871|ref|ZP_03046932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|193070830|ref|ZP_03051763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194429374|ref|ZP_03061899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218693557|ref|YP_002401224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 55989]
 gi|260842324|ref|YP_003220102.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|260853301|ref|YP_003227192.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|260866241|ref|YP_003232643.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|293476748|ref|ZP_06665156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|307311461|ref|ZP_07591103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|118595690|sp|Q326E7|MURD_SHIBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81244103|gb|ABB64811.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella boydii
           Sb227]
 gi|192926458|gb|EDV81091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|192955860|gb|EDV86330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194412594|gb|EDX28891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218350289|emb|CAU95972.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           55989]
 gi|257751950|dbj|BAI23452.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|257757471|dbj|BAI28968.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|257762597|dbj|BAI34092.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|291321201|gb|EFE60643.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|306908440|gb|EFN38938.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|315059311|gb|ADT73638.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           W]
 gi|323157845|gb|EFZ43948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EPECa14]
 gi|323160114|gb|EFZ46075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E128010]
 gi|323171251|gb|EFZ56899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LT-68]
 gi|323176396|gb|EFZ61988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1180]
 gi|323181785|gb|EFZ67198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1357]
 gi|323380131|gb|ADX52399.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           KO11]
 gi|323945717|gb|EGB41765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H120]
 gi|324118438|gb|EGC12332.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1167]
 gi|332098911|gb|EGJ03862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           3594-74]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L ++   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDAECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|310642989|ref|YP_003947747.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Paenibacillus
           polymyxa SC2]
 gi|309247939|gb|ADO57506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa SC2]
          Length = 473

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 23/142 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           I+ +TG++GK++  ++V ++ + SG++    G   T +   A D           AK+  
Sbjct: 114 IIGITGSNGKTTTTTWVGKLLEASGMNPIVAGNIGTPLCEAAVD-----------AKSDE 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           ++         VE SS  L   +    K       N+   H+DYH   + Y  +K RLF 
Sbjct: 163 WMV--------VELSSFQLKGTK--DFKPAVACLLNVAETHLDYHGGMEDYVASKARLFA 212

Query: 236 ELLPKESPAIIYADDAYSKEVM 257
                ++ A++  DD+  +E++
Sbjct: 213 NQTASDT-AVVNWDDSVCRELV 233


>gi|298253385|ref|ZP_06977177.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
 gi|297532780|gb|EFH71666.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
          Length = 596

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 28/217 (12%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRI 358
           +F   + G+F   NAL A  +   +GI+    L  L  +  V   GR E           
Sbjct: 386 EFALSIAGDFNYENALAAIAIAGELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIA 445

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            VDYAH   S + +L  +       + RI ++ G  GD+   +R  + + A +  +  I 
Sbjct: 446 VVDYAHNYISTKSVLDFVEERYGKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIF 505

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAI------EMLN-KQD 460
           T ++  +ED       I   +  ++   N        R EAI  A       E  N + +
Sbjct: 506 TTEDTDTEDV----MHICEDMQSYVTNTNVSSRIIIDRAEAIEYAYNDAANSEQKNGRLN 561

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495
           +L+  GKG E    + N  K +  + D  +I+ + GL
Sbjct: 562 ILLAIGKGDE--RWIKNKRKHVPYEGDSFVIKRLFGL 596



 Score = 40.4 bits (93), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 27/225 (12%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           FP    +      + D+R I  G +   I GN +  +L    A  +G  A V   +Y+  
Sbjct: 59  FPNIDADECFTNATYDTRDITLGTLLF-IKGNFKSEYLL--DADNKGLAAYVAEQSYA-- 113

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASFVQQICQ 138
            ++  +      L+V + +K +S+ A+  +G   E +  +  T  K     A F   I  
Sbjct: 114 QYTKAVG-----LIVTDAKKAMSVLAAAFFGNPQEKLTIIGITGTKGKTTTAYFTHAI-- 166

Query: 139 RSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              L+S   G  +  SS           ++ LTTP      K +      G+ ++ +E S
Sbjct: 167 ---LNSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEVS 223

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
           S     +R+ G+K    +F N+  DHI    H T + Y   K ++
Sbjct: 224 SQAYKVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQI 268


>gi|170728854|ref|YP_001762880.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           woodyi ATCC 51908]
 gi|169814201|gb|ACA88785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella woodyi
           ATCC 51908]
          Length = 442

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 25/134 (18%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA  +  + P  ++ +TG++GKS+V + V ++ + +GL ++ +G    + +    + 
Sbjct: 97  VELFARAVKDREP-CVIGITGSNGKSTVTTLVGEMARVAGL-NYAVGGNIGVPAL---DL 151

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYH 220
           L  P  +Y+                +E SS  L+  H L+    I  +  N+  DH+D +
Sbjct: 152 LREPRDLYI----------------LELSSFQLETTHSLN---CIVATCLNISEDHMDRY 192

Query: 221 QTQQAYFNAKMRLF 234
              +AY  AK+ L+
Sbjct: 193 TDLEAYRQAKLSLY 206


>gi|258622767|ref|ZP_05717785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
 gi|258584955|gb|EEW09686.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 110/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S V  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V KR    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVFKR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|258625793|ref|ZP_05720672.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
 gi|258582031|gb|EEW06901.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 110/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S V  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V KR    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVFKR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|187251915|ref|YP_001876397.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
 gi|226711909|sp|B2KEW4|MURD_ELUMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|186972075|gb|ACC99060.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
          Length = 452

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 105/227 (46%), Gaps = 19/227 (8%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           LA+ +S +    +  + +E SS+ L+       K  A +  N+  DHID+H + + Y +A
Sbjct: 153 LAEVMSEIKQHDL--IVMEVSSYQLEDSSY--FKPYAATILNITPDHIDHHGSFKKYLDA 208

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K ++F+    K+   I  AD    K  +K A N   ++   G+    +   +    ++  
Sbjct: 209 KSKIFKFQTQKDIAVINSAD----KNCLKAAKNIKSKLY--GFATTPLQQIRSHVFYDGD 262

Query: 290 QVTISVEGKDFDFLFP--LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++  S   +    + P  LPG   V NA+ A+ L +A G+DS  + +   K   V  R E
Sbjct: 263 ELVFSAGER----ISPPKLPGIHNVENAMAASLLALAAGVDSQSIQQAFNKFKTVEHRIE 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +G   + G  +++ +  +N ++  +  +R++  G+   +   G D+
Sbjct: 319 LLGI--KKGISFINDSKATN-IDSTIIALRSMPDGKKTWLILGGQDK 362


>gi|194364381|ref|YP_002026991.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia R551-3]
 gi|229620423|sp|B4SJX6|MURC_STRM5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194347185|gb|ACF50308.1| UDP-N-acetylmuramate/alanine ligase [Stenotrophomonas maltophilia
           R551-3]
          Length = 478

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 130/331 (39%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLTAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  I    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMSI---ITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G   +  +  + V    ++ + T+ + +G   + 
Sbjct: 224 VLCIDD---PEVAALAAKTPRHVMSYGMSPQADVRAENVVQEGSRMRFTLRLPQGTSQEV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
           +  LPG+  V NAL AA +   +G+    +   LE    V  RF  +G  T + G ++ +
Sbjct: 281 VLALPGKHNVLNALAAAAVGWQLGVAPDAIARALEGFAGVGRRFNDLGEVTTASGAKVRI 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H  + LE +    R      R++V F
Sbjct: 341 IDDYGHHPSELEAVFAAARGGWADKRLVVAF 371


>gi|313619830|gb|EFR91420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
          [Listeria innocua FSL S4-378]
          Length = 79

 Score = 40.8 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
          SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A
Sbjct: 28 SIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVA 79


>gi|307564692|ref|ZP_07627222.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
 gi|307346620|gb|EFN91927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 45/288 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I          +P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIFHIFKDAG---YDVGLAGNIGKSLALQVAESPHAYYV------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D ++ + + Y NAKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYKFRANIAILLNITPDHLDRYEYKFENYANAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               KE   I + DD   K+ +++       V +V Y   F  LK+  +I   ++   ++
Sbjct: 203 N-QTKEDSFIYWKDDPVIKKELEKFD-----VKAVQYP--FSELKETGSIGYIEEGMYTI 254

Query: 296 EGKDFDFL-----FPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFV 349
           E K   F        L G+  +YN+L AAG+   I GI    + + L     V  R E V
Sbjct: 255 E-KPIPFNMEQEDLSLTGKHNIYNSL-AAGIAANIGGIKKENIRKSLSDFKGVEHRLEKV 312

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              S  G  Y++ +  +N ++     + ++ +  ++++    G RD+G
Sbjct: 313 CKVS--GVQYINDSKATN-VDACWYALESMVTPTVLIL----GGRDKG 353


>gi|89895655|ref|YP_519142.1| hypothetical protein DSY2909 [Desulfitobacterium hafniense Y51]
 gi|122063244|sp|Q24TE4|MURD_DESHY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89335103|dbj|BAE84698.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 454

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 20/205 (9%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L+  +  L  +G+  +  E SS  L+   +D +++  G   N+  DH+D H T   Y 
Sbjct: 144 VALSDQVEDLDGEGI--IVAELSSFQLEW--VDSLRMNVGILLNVTPDHLDRHGTLDNYL 199

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-----SVGYQGKFIHLKKV 282
            AK R+FE+  P +  AI+  DDA    V   A +   RV+     S+  +G  +   +V
Sbjct: 200 AAKARIFEKQSPSDC-AILNWDDA---RVRALAPHLKARVVFFSPTSLLAEGYGVRGDEV 255

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 +   I   G+       L G   + N + A      +G+    + + L     V
Sbjct: 256 VLAEGGKITPIIARGE-----LQLRGSHNLENIMAAIAAVRELGLSWEEITQGLRDFKGV 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSN 367
             R E VGT    G ++++ +  +N
Sbjct: 311 EHRQEVVGTYE--GILFINDSKGTN 333


>gi|157156086|ref|YP_001461258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli E24377A]
 gi|209917281|ref|YP_002291365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SE11]
 gi|218552671|ref|YP_002385584.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI1]
 gi|300816126|ref|ZP_07096349.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300923130|ref|ZP_07139190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|301330131|ref|ZP_07222800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|157078116|gb|ABV17824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E24377A]
 gi|209910540|dbj|BAG75614.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE11]
 gi|218359439|emb|CAQ96977.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI1]
 gi|300420585|gb|EFK03896.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|300531333|gb|EFK52395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300843878|gb|EFK71638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|320200393|gb|EFW74979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EC4100B]
 gi|324017751|gb|EGB86970.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 117-3]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L ++   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDAECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFAGLPHRFEVV 307


>gi|325128832|gb|EGC51691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis N1568]
          Length = 452

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR  +AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L + A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|294784925|ref|ZP_06750213.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 3_1_27]
 gi|294486639|gb|EFG34001.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 3_1_27]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 49/248 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 93  IIAITGTNGKSTTTAKISDMLNYAGYKAAYAGN--------------------IGRSLSE 132

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ + +   Y++ K    
Sbjct: 133 VLLKEKDLDFISLELSSFQLEN--IENFKPYISMIINMGPDHIERYNSFDEYYDTKFN-- 188

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQV 291
             +   ++  + + ++    E+ KRA     + +SV    K   F+   K+C   N    
Sbjct: 189 --ITKNQTEDLYFIENIDDVEIEKRAKQIKAKRISVSKFKKADIFVKNDKICYGENS--- 243

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---------ALVLEHLEKLHVV 342
            I V+         L G   + N L        + ID          A  LEH  +L   
Sbjct: 244 IIDVDK------LSLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFN 297

Query: 343 PGRFEFVG 350
            G+ +F+ 
Sbjct: 298 YGKVKFIN 305


>gi|254525136|ref|ZP_05137191.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
 gi|219722727|gb|EED41252.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
          Length = 478

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 130/331 (39%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLTAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  I    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMSI---ITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G   +  +  + V    ++ + T+ + +G   + 
Sbjct: 224 VLCIDD---PEVAALAAKTPRHVMSYGMSPQADVRAENVVQEGSRMRFTLRLPQGTSQEV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
           +  LPG+  V NAL AA +   +G+    +   LE    V  RF  +G  T + G ++ +
Sbjct: 281 VLALPGKHNVLNALAAAAVGWQLGVAPDAIARALEGFAGVGRRFNDLGEVTTASGAKVRI 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H  + LE +    R      R++V F
Sbjct: 341 IDDYGHHPSELEAVFAAARGGWADKRLVVAF 371


>gi|124021741|ref|YP_001016048.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9303]
 gi|166224716|sp|A2C5M3|MURC_PROM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123962027|gb|ABM76783.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 488

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 19/183 (10%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRL---FEELLPK-ESPAIIYADDAYSKEVMKRAHN 262
           G  TNL  DH D++       N   R       LL   + P +    DA +   +K +  
Sbjct: 193 GVITNLELDHTDHYADLDELINTMKRFGRGCRRLLANFDCPILKEHFDATAWWSVKTS-- 250

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           AG    ++           +C   ++    I  +GK       P+PG   + NA+ A   
Sbjct: 251 AGVDFAAL----------PICLNGDQTIADIYEQGKRMGQITLPMPGLHNLSNAMAAIAA 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-T 380
           C   G+    + + L  L     RF+F GT   G +I  DYAH  + +   L   R I T
Sbjct: 301 CRLAGLSFEDLQQGLADLQPPGRRFDFRGT-WEGRQIVDDYAHHPSEVSATLAMARLIVT 359

Query: 381 SGR 383
           SGR
Sbjct: 360 SGR 362


>gi|325136983|gb|EGC59580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M0579]
          Length = 463

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+   +A        
Sbjct: 19  FICQALKLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAA 74

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 75  AVVVSREDCAALKDA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 130

Query: 134 QQICQ 138
             + +
Sbjct: 131 AAVLR 135


>gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301]
          Length = 789

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 29  KINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ++  V +DSR +     +G +FVA+ G   D H F+ Q  A+G  A +V           
Sbjct: 22  EVQSVVTDSRSLTCELGSGPVFVAMCGANHDSHAFVAQMYARGVRAFMVERPLEAL---- 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                   +VV+N    L   A+    +    ++ +TG++GK+ +  ++ +
Sbjct: 78  ---PECGYVVVENAIAALQCLAAYHRAQFRGTVVGITGSNGKTVIKEWIAE 125


>gi|149186206|ref|ZP_01864520.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
 gi|148830237|gb|EDL48674.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
          Length = 493

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 148/391 (37%), Gaps = 71/391 (18%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V  DSR +  G +FVA+ G   DGH F+ +A A GA A +V               
Sbjct: 45  QVAGVEMDSRDVVHGDLFVALKGEAMDGHRFLDKAFANGAAAAIVDRPV----------- 93

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF--- 145
           + P ++V++T + L   A     +    I+ VTG+ GK+ V   +    +R+   +    
Sbjct: 94  DYPHILVEDTTEALKALARAARNRTEAKIIGVTGSVGKTGVKEAIFASLERASRGAAHRS 153

Query: 146 ------QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                  +G   +++     NR       +  A  +  L++Q   HV+V           
Sbjct: 154 TRSYNNHVGVPLSLARMPARNRFGIFEMGMNNAGEIEGLTTQVRPHVAV----------- 202

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-- 256
                      T +   HI+   + +A  +AK  +F  L P    A+I AD  + + +  
Sbjct: 203 ----------ITTIAPAHIENLGSMEAIADAKAEIFAGLEPG-GVAVIPADSEHFERLRL 251

Query: 257 -----------MKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                        RA NA  R+L        G  +     C   N  +      G    +
Sbjct: 252 AALRMSASVVSFGRAANADVRLLDAIPSANGGSLV----TCEFGNPAK-----GGGRLCY 302

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVD 361
               PG+  V N+L       A G D A     L ++  + GR    G ++ GG+ + +D
Sbjct: 303 TVAEPGDHWVINSLAVMATVRAAGGDMAAAGLALAEMGGLKGRGARHGIDAPGGKALLID 362

Query: 362 YAHTSN--SLEMILKNIRTITSGRIIVVFGC 390
            ++ +N  S+   L  +    S R I V G 
Sbjct: 363 ESYNANPASMRATLAQLGQTPSSRRIAVLGS 393


>gi|163784502|ref|ZP_02179369.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880227|gb|EDP73864.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 114/279 (40%), Gaps = 30/279 (10%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           S  N+  +H+ Y++       A ++ F   +P      +  DD   K+++ +      +V
Sbjct: 134 SINNIDLEHVGYYRNLDDIKKAFIK-FANKVPFYGAVALNIDDKNVKDILPKIEK---KV 189

Query: 268 LSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +  G + K   I+  ++  ++   +  ++  G+       +PG+  VYNAL A  +   +
Sbjct: 190 IKFGIENKDADINAYELELVNGTYRFKVNDLGQ---IHLSVPGKHNVYNALTAVAIADEL 246

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIR-TITSG 382
           GI   +V E LE       RFE        G I V  DYAH  + L+  +   +      
Sbjct: 247 GIPFCVVKETLENFKNASRRFEI----KYDGNIKVIDDYAHHPSELKATICAAKDKYPDR 302

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP-EKIRAEIIHGIPGF 439
           RII VF     R      +  + A     +D  I+TD     E P E I AE +      
Sbjct: 303 RIITVFQP--HRYTRLHSLFNQFAESFGNSDTVIITDIYSAGEKPIENISAEKL--TEKI 358

Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHET 471
            EKG  +       +      EM+ + DV+++ G G+ T
Sbjct: 359 KEKGKEVYFAKYLSDVENMLKEMIKEGDVVLILGAGNIT 397


>gi|74310707|ref|YP_309126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           sonnei Ss046]
 gi|118595692|sp|Q3Z5S1|MURD_SHISS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|73854184|gb|AAZ86891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sonnei
           Ss046]
 gi|323165971|gb|EFZ51751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella sonnei
           53G]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L ++   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDAECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|323975748|gb|EGB70844.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TW10509]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L ++   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDAECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|313887870|ref|ZP_07821549.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846036|gb|EFR33418.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 425

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 29/180 (16%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--------GRFEFVGTN 352
           D    L G+ Q YNA +A            +VLE+L K + +          R E +G  
Sbjct: 244 DVEISLIGDHQAYNAALAL-----------MVLEYLRKDYKLGPDKIKEGLKRAENIGRT 292

Query: 353 ---SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              SR   I VD +H  +S+E I K+++  T  ++I+ F    D+D   + I+ KI   L
Sbjct: 293 ECLSRDPLIVVDGSHNLDSIEGIEKSVKKFTYNKLILGFSLLKDKDH--KHILEKIE-RL 349

Query: 410 ADIAIVTD-DNPRSEDPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  ++T+ D+ R  D + +  E   I     F  K +R EA+   +E+  + D+++  G
Sbjct: 350 ADKIVLTEIDSDRFTDIDLLEKEFKKISNKEIFAIK-DRKEAVEKTLELAGEGDMILWCG 408


>gi|262170518|ref|ZP_06038196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
 gi|261891594|gb|EEY37580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 110/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S V  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V KR    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVFKR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|269956080|ref|YP_003325869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304761|gb|ACZ30311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 105/250 (42%), Gaps = 26/250 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R    V +DSR ++ G +F AI G + DG  F   A A    A++V +A  +      + 
Sbjct: 24  RVTGPVVADSRLVEPGALFAAIPGARVDGADF--AAGAVADGAVLVLAAREIDGLPVVVV 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC--QRSGLSS 144
            +    + D  R  L     RL   +P   + ++TG++GK++    + ++   + +   S
Sbjct: 82  DDVAAALGDLARVVL----ERLRAANPAVKVFSITGSAGKTTTKDLLGRLVAGEAADGGS 137

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH---VSVEASSHGLDQHRLDG 201
             I PT + +S              +   L+ L     T    + + A   G   +    
Sbjct: 138 DTIAPTGSFNS-------------EIGLPLTVLRGTAATRKLVLELGADKPGDIGYLASI 184

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++        +G  HI++  +Q+A  +AK  +   L+P  + A++ ADD     +  RA 
Sbjct: 185 VRPQIAVILMVGTAHIEFFGSQEAIADAKAEVLGGLVPGGT-AVLNADDERVLGLAPRAT 243

Query: 262 NAGCRVLSVG 271
             G RV++ G
Sbjct: 244 ALGHRVVTFG 253


>gi|121593081|ref|YP_984977.1| cyanophycin synthetase [Acidovorax sp. JS42]
 gi|120605161|gb|ABM40901.1| cyanophycin synthetase [Acidovorax sp. JS42]
          Length = 861

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQV N + A G    +G+    +   L          PGRF  +  + RG  +  DY H 
Sbjct: 674 FQVENVMAAIGAAWGVGLPWQTIRRGLAGFMNDSDNAPGRFNVM--DYRGATVIADYGHN 731

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPR 421
            +++  +++ ++ + +  R +V+ G G  RDQ    +  I+G+      D+ +  D   R
Sbjct: 732 PDAMRALVQAVQAMPARQRSVVISGAGDRRDQDIVEQTQILGQ---SFDDVVLYQDACQR 788

Query: 422 SEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++ A +  G+ G        E      AI  A+E L   D+ +V
Sbjct: 789 GRADGEVLALLRQGLQGAPRTRYVTEIHGEFLAIDHALERLQPGDLCLV 837


>gi|329118775|ref|ZP_08247473.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465122|gb|EGF11409.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 484

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 123/322 (38%), Gaps = 41/322 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++  S    +   +GL  +F IG   T S    + RL     I      S 
Sbjct: 123 IAIAGTHGKTTTTSLTASVLAAAGLDPTFVIGGKLTAS--GTNARLGKGEYIVAEADESD 180

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQTQ---QAYFNAKMR 232
            S   +T +    ++  +D+  +D       S   L +  +D+ H+     +A+  A   
Sbjct: 181 ASFLHLTPIMSVVTN--IDEDHMD---TYGHSVEKLHQAFVDFIHRMPFYGKAFLCADSE 235

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +LPK S    Y    + ++   RA N    + S G Q KF              V 
Sbjct: 236 HVRAILPKVSKP--YTTYGFGEDADIRAEN----IESDGAQMKF-------------AVR 276

Query: 293 ISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + ++G    DF     LPG   V NAL A G+ +  G D+A + + L+    V  RF+  
Sbjct: 277 VRMKGHEPLDFPVTLNLPGRHNVLNALAAIGVALECGADTAAIQQGLQNFGGVGRRFQSY 336

Query: 350 G--TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           G      GG   V  DY H    +   L   R     R + V      R    R +    
Sbjct: 337 GEIPLKTGGSALVIDDYGHHPTEMAATLAAARGAYPHRRL-VLAFQPHRYTRTRDLFDDF 395

Query: 406 A--LDLADIAIVTDDNPRSEDP 425
           A  L+  D  ++TD     EDP
Sbjct: 396 AKVLNTVDTLVLTDVYAAGEDP 417


>gi|256820163|ref|YP_003141442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581746|gb|ACU92881.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 46/289 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           I+ +TG++GK++       I + +GL   Q+G    I  SFA+   + T +P Y    +S
Sbjct: 104 IVGITGSNGKTTTTLLTYHIFKEAGL---QVGLGGNIGYSFAE--LVATKNPPYYVLEIS 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
                G+ H +   +                    N+  DH+D Y    + Y ++K R+ 
Sbjct: 159 SFQLDGIEHFAPHIA-----------------VLLNITPDHLDRYDYKFENYIDSKFRI- 200

Query: 235 EELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNK 288
             +   E+  +IY ADD    + +   H    +++         QG F+   K+  +   
Sbjct: 201 -AMNQTENDYLIYDADDEVITQWLS-THTIKSKLIPFSIEKELPQGAFLKDNKIYIMLEN 258

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q   I VE         L G+  + N + A+     + I +  + E L+     P R E 
Sbjct: 259 QTTEIDVEE------ISLRGKHNIKNTMAASVAARLVNIRNNSLRESLKGFKGAPHRLEE 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           V      G  YV+ +  +N +  +   + TI +  + +V    G +D+G
Sbjct: 313 VKV--VDGVTYVNDSKATN-VNSVFYALDTIKTPIVWIV----GGQDKG 354


>gi|153955827|ref|YP_001396592.1| hypothetical protein CKL_3218 [Clostridium kluyveri DSM 555]
 gi|219856194|ref|YP_002473316.1| hypothetical protein CKR_2851 [Clostridium kluyveri NBRC 12016]
 gi|146348685|gb|EDK35221.1| FolC [Clostridium kluyveri DSM 555]
 gi|219569918|dbj|BAH07902.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 450

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 20/188 (10%)

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-------IGIDSALVLEHLEKLHV 341
           QQV I+ +  D+D    L G+ Q+ N   AA L          I +D +++   L  +  
Sbjct: 252 QQVKIATKEADYDIKLSLLGKHQLLNC--AAALFTLEQLSRYDILVDKSVISRALGNVS- 308

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRP 400
             GR E +G N     + +D AH    + M+ +NI R      +I++ G   D++  K  
Sbjct: 309 WKGRLEVMGRNP---LVVIDGAHNIQGISMLKENICRYFQYNDMILILGILADKEVEK-- 363

Query: 401 IMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNK 458
            M K  + LA  +  VT  + R +   +++  II       E  N  E A R A+   +K
Sbjct: 364 -MVKTIVPLAKRVMAVTPKDKRGQIAGRLKT-IIGKYNSNCEDFNDYEKAYRKALSYCSK 421

Query: 459 QDVLVVAG 466
           +D+++V G
Sbjct: 422 EDLILVCG 429


>gi|197116887|ref|YP_002137314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
 gi|226711912|sp|B5EBP9|MURD_GEOBB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197086247|gb|ACH37518.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
          Length = 452

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 36/236 (15%)

Query: 178 SSQGVTHVSVEASS---HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S Q V+ V VE SS    G++  R D   L+     N+  DH+D + + Q Y +AK+R+F
Sbjct: 153 SGQEVSRVVVELSSFQLEGVESFRPDVAVLL-----NITEDHLDRYHSFQEYIDAKLRIF 207

Query: 235 EE-------LLPKESPAIIYADDAYSKEV--MKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           E        +L  + P +         ++  M R H        + Y+  FI        
Sbjct: 208 ENQTADDFAVLNIDDPLVAACASKLKAQLFPMSRLHELE---EGISYRDGFITFS----- 259

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           H  + +    EG      F L G   + N + +    + +  D     E ++    +P R
Sbjct: 260 HKGKVLRFGTEG------FKLKGVHNLDNIMASLASTLLMRCDGDCAYEAVKNFKGLPHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            E V      G  Y + +  +N +  ++K++ +  SG  I +   G D+     P+
Sbjct: 314 MELV--EEIDGVAYYEDSKGTN-VGSVVKSLESFDSG--ITLIAGGKDKGGSYEPL 364


>gi|313903534|ref|ZP_07836924.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466087|gb|EFR61611.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 478

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 12/171 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266
           TN+  +H+D+++     F   +  F   L    P    +   D    ++++        R
Sbjct: 189 TNVEPEHLDHYEGD---FRRLLDAFRGFLGNVRPGGLVVACGDHPVVRQLLAGLPAGRVR 245

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDF-DFLFPLPGEFQVYNALVAAGLCI 323
           V   G + +  HL+        +    SV  EG+   +    +PGE  V NAL A  + +
Sbjct: 246 VARYGVEAEDCHLRARDVQTGPEGTRFSVWQEGRPLGEVTLAVPGEHNVLNALAALAVGL 305

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMIL 373
            +G+   +  + L   H    RF+ +  + R G + V DYAH    +   L
Sbjct: 306 EVGVPFGVAAQALAGFHGAKRRFQVI--HDRDGILVVDDYAHHPTEIRATL 354


>gi|313673685|ref|YP_004051796.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940441|gb|ADR19633.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT+GKS+V     Q+ +  G+++   G    I     D  L     +Y+      
Sbjct: 85  IIGITGTNGKSTVTFLTAQLLKNIGINAEFCG---NIGVTVGDTYLLKNPDVYV------ 135

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                     VE SS  LD   L   +    + TN+  DH+D ++T   Y  +K R+ E
Sbjct: 136 ----------VEVSSFQLDL--LKRFRFDTSTITNITPDHLDRYKTMDRYITSKSRMVE 182


>gi|239994434|ref|ZP_04714958.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii ATCC
           27126]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 128/334 (38%), Gaps = 47/334 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + IVVSSA + Q+    +     I ++        L   R +G      +AV GT G
Sbjct: 73  EGMDVIVVSSAINEQNPEIIVAREKRIPIIRRAEMLAELMRFR-HG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S +  I   +    +F IG    ++S   + RL   S   +A+A     S+L  Q
Sbjct: 126 KTTTTSLISTIFAEAEYDPTFVIG--GLLNSAGTNARLGK-SRYLIAEADESDASFLHLQ 182

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D +    +        F   LP 
Sbjct: 183 PMVSV-----------------------VTNIEADHMDTYGGDFSKVKDTFVDFLSNLPF 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT-ISVEGK 298
              AI+  DDA  +E+  R    G  +L+ G++       + V     K   T I  E +
Sbjct: 220 YGQAIVCGDDANIQEIRPR---IGRSILTYGFESHNDYRAENVSLSFGKANFTVIRPERE 276

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGG 356
             D    L G   V NAL A  +    G+D   ++  L     +  RFE +G  T S+G 
Sbjct: 277 PLDITLNLTGNHNVLNALAAIAVATDEGVDDDAIIRALASFGGIGRRFEQLGTFTTSKGE 336

Query: 357 RIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
              V DY H    +   +   R      R+++V+
Sbjct: 337 VCLVDDYGHHPTEVRATIAAARANWPDKRLVMVY 370


>gi|171060710|ref|YP_001793059.1| cyanophycin synthetase [Leptothrix cholodnii SP-6]
 gi|170778155|gb|ACB36294.1| cyanophycin synthetase [Leptothrix cholodnii SP-6]
          Length = 865

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 29/334 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTGT+GK++    +  I   SGL   ++G T+T   +    ++ +        A + 
Sbjct: 477 LVAVTGTNGKTTATRLIAHILATSGL---RVGMTNTDGVYVNGRQIDSGDCSGPKSARNV 533

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DYHQTQQAYFNAKMRL 233
           L    V     E +  G+ +  L   +      TN+G  DH+  +Y  T +     K R+
Sbjct: 534 LMHPDVDAAVFETARGGVLREGLGFDRCQVAVVTNIGAGDHLGLNYITTVEDLAVLK-RV 592

Query: 234 FEELLPKESPAIIYADDAYSKEVM------------KRAHNAGCRVLSVGYQGKFIHLKK 281
             + +     A++ A D     +              R H       + G +  F+   +
Sbjct: 593 IVQNVAASGYAVLNAADPICAAMATTCPGQVIFFAADRQHPVMATHRAQGKRCVFVDGDQ 652

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-- 339
           + A     + ++S+  +D          FQV NA+ A      +G+D   V   L     
Sbjct: 653 LVAAEGAWRESVSL--RDIPITRGGLIGFQVENAMAAVAAAWGVGLDWDAVRRGLASFVN 710

Query: 340 --HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQ 396
                PGRF  +  + RG  +  DY H  +++  ++  +  +    R +V+ G G  RD+
Sbjct: 711 DADNAPGRFNVL--DYRGATVIADYGHNPDAMRALVSAVDALPGKRRSVVISGAGDRRDE 768

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRS-EDPEKIR 429
             R     +     D+ +  D   R  ED E +R
Sbjct: 769 DIREQTQILGQAFDDVILFQDACQRGREDGEVLR 802


>gi|119484349|ref|ZP_01618966.1| cyanophycin synthetase [Lyngbya sp. PCC 8106]
 gi|119457823|gb|EAW38946.1| cyanophycin synthetase [Lyngbya sp. PCC 8106]
          Length = 868

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 132/343 (38%), Gaps = 29/343 (8%)

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           IG T+T  ++  D  L +        A   L+   V    +E +  G+ +  L   +   
Sbjct: 517 IGYTTTDGTYIGDFLLESGDNTGRQSAQLILNDPTVEVAVLETARGGILRSGLGFNRCDV 576

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           G   N+  DH+           A+++ +  E    +  A++ ADD    ++ K       
Sbjct: 577 GVVLNVAADHLGLEDINTLEDMAQVKTVVAEATDDKGYAVLNADDPLVADMAKWVKGK-V 635

Query: 266 RVLSVGYQGKFI--HLKK--VCAIHNKQQVTISVEGKD---FDFLFPLPG------EFQV 312
              S+      +  HL+K  + AI++   +T    G+D    + +  +P        F +
Sbjct: 636 AYFSINPHNPIVQEHLRKGGIAAIYDGDFLTFC-NGQDTLQVEQMVNVPSTLRGLVSFMI 694

Query: 313 YNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            N L A+      G+    +   L      L   PGR   +        + +DYAH    
Sbjct: 695 ANVLAASLAAYVQGVSIENISTGLRTFQASLEHTPGRMNLIELGKF--HVLIDYAHNPAG 752

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-----TDDNPRSE 423
            + I + +   + G  I V G  GDR       +G+++  + D  I+     T D PR E
Sbjct: 753 YKAIGEFVCQWSEGERIGVIGGPGDRRDQDLKELGRLSTQMFDWVIIKEDDNTRDRPRGE 812

Query: 424 DPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVV 464
               IR  I    P F   E  +  EAI++A+   ++  ++V+
Sbjct: 813 AASLIREGICQEKPQFNYQEIWDETEAIQSALASASEGSLVVI 855


>gi|34556863|ref|NP_906678.1| D-alanyl-D-alanine-adding enzyme [Wolinella succinogenes DSM 1740]
 gi|34482578|emb|CAE09578.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Wolinella succinogenes]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 132/314 (42%), Gaps = 52/314 (16%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI-GPTSTISSFAQ-----DNRLTTPSPIY 169
            I+A+TG+ GK+S+ +F+ QI       +F++     ++++FA      +  L+  S IY
Sbjct: 161 TIIAITGSYGKTSLKNFLAQILN----DNFKVHASPRSVNTFAGIVADINENLSPLSDIY 216

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +A+A         T   ++     L+ H         G    +G  H++Y +T +     
Sbjct: 217 IAEA------GARTRGDIKEIGVLLEHHY--------GIVGKVGEQHMEYFRTLENVRET 262

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIH 286
           K  L       +SP +        KE+     N   +G +  S   + +      + A  
Sbjct: 263 KFEL------AQSPRL--------KELFSYEGNTPPSGIKATSFPTETR-----NIKATL 303

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 + +EG+ + F   + GEF V N   A  + + +GI    +   + +L  +P R 
Sbjct: 304 KGTSFEMLIEGQFYPFETEVLGEFNVTNISAAILVALRLGIPIEKIQRQVARLKPIPHRL 363

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGK 404
           + +  N    ++ +D +   N LE +L+ IR  ++  GR ++V     +  +     + +
Sbjct: 364 QKMEVNL---KLILDDSFNGN-LEGMLEAIRLSSLYYGRKVIVTPGLVESTEEANTTLAQ 419

Query: 405 IALDLADIAIVTDD 418
              +  DIAI+T +
Sbjct: 420 AINETFDIAILTGE 433


>gi|315181129|gb|ADT88043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio furnissii NCTC 11218]
          Length = 486

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 112/285 (39%), Gaps = 46/285 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  +D+      Y  A + 
Sbjct: 182 DASFLHLQPMATIVTNIEADHMDTY--------GGDFETLKQTFVDFLHNLPFYGQAILC 233

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  EL+P+ S  +I     +S++   R  N        G QGKF            
Sbjct: 234 VDDPVVRELIPRISRHVITY--GFSEDADVRIEN----YRQEGQQGKF------------ 275

Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              T+  +G+ + D    +PG     NA  A  +     I   ++L  +        RF+
Sbjct: 276 ---TVVRQGRANLDITLNIPGRHNALNASAAIAVATEDDIHDDVILRAMANTQGTGRRFD 332

Query: 348 FVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +G    G G + +  DY H    + + +   R      R++++F
Sbjct: 333 HLGEFDTGNGDVMLVDDYGHHPTEVGVTIAAARNGWADKRLVMIF 377


>gi|256061487|ref|ZP_05451631.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella neotomae 5K33]
 gi|261325494|ref|ZP_05964691.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella neotomae 5K33]
 gi|261301474|gb|EEY04971.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella neotomae 5K33]
          Length = 471

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 14/188 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  +   R+++
Sbjct: 181 TNIDPEHLDHYGNFDA-VRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDR--RIIT 237

Query: 270 VG----YQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLC 322
            G     + +F + +   A      V  S +G+     D   P+PG   V NA  A  + 
Sbjct: 238 YGSNPQAEVRFANQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNATAAIAVA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
             +GI S  +   L     V  RF   G+ + G  I+ DY H    +  +LK  R  TS 
Sbjct: 298 HELGISSDDIRRGLGSFGGVKRRFTHTGSWN-GVEIFDDYGHHPVEIRAVLKAAREATSQ 356

Query: 382 --GRIIVV 387
             GR++ +
Sbjct: 357 AGGRVVAI 364


>gi|34763168|ref|ZP_00144135.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887166|gb|EAA24270.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 31/172 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+A+TGT+GKS+  + +  +   +G  +   G                     + ++LS 
Sbjct: 115 IIAITGTNGKSTTTAKISDMLNHAGYRAAYAGN--------------------IGRSLSE 154

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  + +  +S+E SS  L+   ++  K       N+G DHI+ + +   Y++ K    
Sbjct: 155 VLLKEKDLDFISLELSSFQLEN--IENFKPYISMIINMGPDHIERYNSFDEYYDTKFN-- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVC 283
             +   ++  + + ++    E+ KRA     + +SV    K   F+   K+C
Sbjct: 211 --ITKNQTEDLYFIENIDDVEIEKRAKQIKAKRISVSKFKKADIFVKNDKIC 260


>gi|317014152|gb|ADU81588.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori
           Gambia94/24]
          Length = 493

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 145/336 (43%), Gaps = 68/336 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKAL 174
           ++A+TG+ GK+S  +F+ QI Q    +       +T+   A D    L   S IY+A+A 
Sbjct: 170 VIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDINQNLDDRSEIYIAEAG 229

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   ++G     ++  +H ++ H    + ++A     +G  H++Y +T +     K  L 
Sbjct: 230 A--RNKG----DIKEITHLIEPH----LAVVA----EVGEQHLEYFKTLENICETKAELL 275

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVT 292
           +                      KR   A C  +     Y  K   L  V ++    Q T
Sbjct: 276 DS---------------------KRLEKAFCYSVEKIKPYAPKDSLLTDVSSLVRNIQST 314

Query: 293 ISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHV 341
           +  +G  F+ L           + GEF  YN  +A+ + IA  +G+++  +   +  L+ 
Sbjct: 315 L--KGTSFEMLLDSVWERFETKVLGEFSAYN--IASAILIAKHLGLETERIKRLVLDLNP 370

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGR-IIVVFGCGGDRDQGK 398
           +  R + +  N    +I +D +   N L+ +L+ IR  ++  GR +IV  G      +  
Sbjct: 371 IAHRLQLLEVNQ---KIIIDDSFNGN-LKGMLEGIRLASLHQGRKVIVTPGLVESNTESN 426

Query: 399 RPIMGKIALDLADIAIVTDD-NPRS-----EDPEKI 428
             +  KI  ++ D+AI+T + N ++     + P+KI
Sbjct: 427 EALAQKID-EVFDVAIITGELNSKTIASQLKTPQKI 461


>gi|253699158|ref|YP_003020347.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sp. M21]
 gi|259509773|sp|C6DZK7|MURC_GEOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251774008|gb|ACT16589.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M21]
          Length = 461

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 156/422 (36%), Gaps = 63/422 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA   +D    + ++  ++ V    + L+      YG      +AV GT GK+
Sbjct: 65  ADVVVISSAVH-EDNPEVVEAHLRLIPVIPRAEMLAELMRMKYG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  I  + G     I PT  I    + N L T + +           QG   V+ 
Sbjct: 118 TTTSMVATILSKGG-----IDPTIVIG--GRLNSLGTNARL----------GQGQFLVAE 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S G        I ++    TN+  DH+D++   +   +  +    ++ P    A++ 
Sbjct: 161 ADESDGSFLLLSPTIAVV----TNIDADHLDFYSGIEEIKDTFVEFINKI-PFYGLAVLC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------- 300
            D+    +V+ R      R  S G   +        A      V +S     F       
Sbjct: 216 LDNGNVADVLPRVKK---RFTSYGLSAQ--------ADFRATDVRLSGFSTSFVAHHKGV 264

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +  F +PG   V NAL A  + + + I    + E       V  RF   G  + G  
Sbjct: 265 RLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFGGVGRRFHLKG-EANGIM 323

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAI 414
           +  DY H    ++  L   +      R++VVF     R    + +      A   AD+ I
Sbjct: 324 VVDDYGHHPTEIKATLGAAKAGFAENRLVVVFQP--HRYSRTKELFEDFVKAFHDADVLI 381

Query: 415 VTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +TD  P  E P E + AE +      HG        +R +       +L   D+L+  G 
Sbjct: 382 LTDIYPAGEAPIEGVTAEALANRVRRHGQRDVTWISDRDKLCEHLERVLAPGDILLTLGA 441

Query: 468 GH 469
           G+
Sbjct: 442 GN 443


>gi|188997128|ref|YP_001931379.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|254766029|sp|B2VA52|MURC_SULSY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188932195|gb|ACD66825.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 454

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 71/179 (39%), Gaps = 21/179 (11%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYA 363
           +PG   VYNAL    +C  + +   ++ E LE       RFE   +N     I V  DYA
Sbjct: 270 VPGIHNVYNALATIAICNELSVPFCVIKESLENFKNAKRRFEIKYSND----IIVIDDYA 325

Query: 364 HTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNP 420
           H    L+  L   R      RII VF     R      +  +   A D+ DI IVT+   
Sbjct: 326 HHPTELKATLSAARDYFKDRRIIAVFQP--HRYSRLNALFEEFAKAFDIPDITIVTEVYS 383

Query: 421 RSEDP-EKIRAEIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHET 471
             E P E +  E +       E GN +       EA      ++ K DV++  G G  T
Sbjct: 384 AGESPIENVSGEKL--AEKIREYGNNVYYVSNLEEAENLLKNIIQKGDVILTLGAGSIT 440


>gi|197116890|ref|YP_002137317.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter bemidjiensis Bem]
 gi|226706323|sp|B5EBQ2|MURC_GEOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197086250|gb|ACH37521.1| UDP-N-acetylmuramate--alanine ligase [Geobacter bemidjiensis Bem]
          Length = 461

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 156/422 (36%), Gaps = 63/422 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA    D    + ++  ++ V    + L+      YG      +AV GT GK+
Sbjct: 65  ADVVVISSAVH-DDNPEVVEAHLRLIPVIPRAEMLAELMRMKYG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  I  + G     I PT  I    + N L T + +           QG   V+ 
Sbjct: 118 TTTSMVATILSKGG-----IDPTIVIG--GRLNSLGTNARL----------GQGQFLVAE 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S G        I ++    TN+  DH+D++   +   +  +    ++ P    A++ 
Sbjct: 161 ADESDGSFLLLSPTIAVV----TNIDADHLDFYSGIEEIKDTFVEFINKI-PFYGLAVLC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------- 300
            D+    +V+ R      R  S G   +        A      V +S     F       
Sbjct: 216 LDNGNIADVLPRVKK---RFTSYGMSAQ--------ADFRATDVKLSGFSTSFVAHHKGV 264

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +  F +PG   V NAL A  + + + I    + E       V  RF   G  + G  
Sbjct: 265 RLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFGGVGRRFHLKG-EANGIM 323

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAI 414
           +  DY H    ++  L   +      R++VVF     R    + +  +   A   AD+ I
Sbjct: 324 VVDDYGHHPTEIKATLGAAKAGFAENRLVVVFQP--HRYSRTKELFEEFVKAFHDADVLI 381

Query: 415 VTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +TD  P  E P E + AE +      HG        +R +       +L   D+L+  G 
Sbjct: 382 LTDIYPAGEAPIEGVTAEALANRVRRHGQKDVTWISDRDKLCEHLERVLAPGDILLTLGA 441

Query: 468 GH 469
           G+
Sbjct: 442 GN 443


>gi|315657994|ref|ZP_07910868.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis
           M23590]
 gi|315497030|gb|EFU85351.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis
           M23590]
          Length = 437

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 97/274 (35%), Gaps = 40/274 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    Q +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGLG-IPQSDYFAFEACEYRRHFLSYR 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +  +  F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDVEDVFDA----FQEM 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296
                 AII    A+  +   R  N    +   G   K  ++   +       +  + + 
Sbjct: 193 ANNVKKAII----AWGDDEHLRKLNVDIPIYYYGLSDKDDVYANDIQITDKGTEFDVYIN 248

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK ++ FL P  G   + NAL    +     +D A + E LE    V  RF    T    
Sbjct: 249 GKYYNHFLTPQYGNHNIQNALAVITISYLEDMDVANIKEALETFGGVKRRFN--ETKYDQ 306

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             +  DYAH    +   ++  R    +  +I VF
Sbjct: 307 QILVDDYAHHPREISATIETARKKYPNKEVIAVF 340


>gi|294085905|ref|YP_003552665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665480|gb|ADE40581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 483

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 133/324 (41%), Gaps = 37/324 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ ++ DSR  + G +FVA+ G + DGH F+ +A    A A +V++     D S  +   
Sbjct: 29  IDHITMDSRMCRKGSLFVALPGAQADGHDFLAKAANADASAALVTT----PDISIELAQ- 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              ++V +    L+  A     +    ++A+TG+ GK+     +  + +  G S    G 
Sbjct: 84  ---IIVPDCLAALTALAVAGRNRFKGAMIAITGSVGKTGTKEMLAHLLRACGQSHANEG- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--GVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +F  +N +  P  +    A S  + Q  G+ H    A    L +     I +I  
Sbjct: 140 -----NF--NNHIGLPLSLAALPAGSQFAIQEIGMNHAGEIAK---LTRIARPDIAMI-- 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CR 266
             T +   H  + ++  A  NAK  +FE +      A++  DD +   + + A +AG  R
Sbjct: 188 --TRIAAVHSGHFESIDAIANAKAEIFEGM--HGGTAVLNIDDPFFPHLSQAAKSAGISR 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +++ G         + C + ++Q     ++   + G    F   + G+    N+L     
Sbjct: 244 IVTFGSHSD----AEFCLLSSRQDNDGMKIEADLSGVPVSFHLGMSGQHWAMNSLGVLAC 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGR 345
             A+G D     + L     + GR
Sbjct: 300 VHALGEDPVAASDSLASFGDIAGR 323


>gi|225009973|ref|ZP_03700445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
 gi|225005452|gb|EEG43402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
          Length = 428

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 55/295 (18%), Positives = 121/295 (41%), Gaps = 41/295 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I++  I+ A+ G + +G+ F   A+  GA   VV +A          + +   
Sbjct: 16  VSTDSRKIESNSIYFALSGERFNGNDFAIDALNNGALYAVVDAA--------KYKDHPGC 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +  K L    +         ++++TG++GK++    + ++  +   +S  +G    
Sbjct: 68  IYVADVLKALQALGTYHRNYCKAKVISLTGSNGKTTTKELIYKVLSQKYNTSATLGNL-- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIA---- 206
                 +N +  P        LS L+ +  T  +V    ++H   Q  ++ +  +A    
Sbjct: 126 ------NNHIGVP--------LSLLNIKESTEFAVIEMGANH---QKEIEFLCALAQPDF 168

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN G+ H++     Q     K  L++ L+      +   +D      +++  ++   
Sbjct: 169 GCITNFGKAHLEGFGGVQGVIKGKSELYQYLIANNKTILYNNEDPIQAGALRQYDHS--- 225

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            +S G   +  +   +     K   ++ ++ +D      L G +   N ++AA +
Sbjct: 226 -ISFGKDQESTYTTSIL----KSNTSVKIQFQDTTINTSLYGAYNATNCMIAASI 275


>gi|88809337|ref|ZP_01124845.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 7805]
 gi|88786556|gb|EAR17715.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 7805]
          Length = 483

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 23/185 (12%)

Query: 207 GSFTNLGRDHIDYH-------QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           G  TNL  DH D++       +T Q + N   RL   L  ++ P +     A +   ++R
Sbjct: 186 GVITNLELDHTDHYRDLDDLIETLQRFGNGCQRL---LANQDDPILNEHFQADAWWSIQR 242

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + N     L V  +G     + +  ++ +      +         P+PG   + N + A 
Sbjct: 243 SDNVDFAGLPVALEGD----RTIADLYEQGTFVGQIT-------LPMPGLHNLSNTIGAL 291

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-T 378
             C   G+    ++ HL +L     RF++ G + +G +I  DYAH  + +   L      
Sbjct: 292 AACRMEGVPLERLISHLSELKTPGRRFDYRG-DWQGRQIVDDYAHHPSEVAATLDMANLM 350

Query: 379 ITSGR 383
           ++SGR
Sbjct: 351 VSSGR 355


>gi|291087162|ref|ZP_06571832.1| tetrahydrofolate synthase [Clostridium sp. M62/1]
 gi|291075829|gb|EFE13193.1| tetrahydrofolate synthase [Clostridium sp. M62/1]
          Length = 469

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 21/173 (12%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P   ++Q  NA++A      +GI    V E L+K  V PGR E +        +Y+D AH
Sbjct: 287 PFAAQYQAVNAMLAVQAAEILGIPERAVREGLQKT-VWPGRMEEIMPG-----VYLDGAH 340

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTD----- 417
               +    +   +++  R I++F    D++  +   M +I L     D+ I+T      
Sbjct: 341 NEGGIRAFARAAASLSGKRKILLFAVSSDKEYRE---MAEILLREFAPDVLILTQIAYGR 397

Query: 418 --DNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             D  R E+   E +     HG P    + +  EA+ TA++   ++D +  AG
Sbjct: 398 GLDIHRLEEASREAMAKAGGHG-PRLFVRPSAEEALLTALDEKGEEDTVFCAG 449


>gi|332977769|gb|EGK14529.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp.
           1501(2011)]
          Length = 476

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 31/201 (15%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +A   TN+ +DH++ +        A    F + +P    A++  DD   KE+     + G
Sbjct: 188 MAAIVTNIDQDHMETYGNSFDKLKAAYIQFLQNMPFYGLAVVCGDD---KELYSMIDDIG 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEG---------KDFDFL---FPLPGEFQ 311
             VL+ G++            HN  Q T + VEG         KD + L     +PG+  
Sbjct: 245 RPVLTYGFEP-----------HNNVQATDVRVEGTKTHFTVLRKDHEPLQLTLNIPGQHN 293

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE---FVGTNSRGGRIYVDYAHTSNS 368
           V NAL A  +    G+D   +   L K   V  RFE    V  +     +  DY H    
Sbjct: 294 VLNALAAITMATDEGVDDEAIKRALAKFAGVGRRFEQQACVKKDEGDVLLIDDYGHHPVE 353

Query: 369 LEMILKNIR-TITSGRIIVVF 388
           +   +K  R +    R++++F
Sbjct: 354 VAATIKAARESYPERRLVMLF 374


>gi|156935389|ref|YP_001439305.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166224688|sp|A7MIF0|MURC_ENTS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156533643|gb|ABU78469.1| hypothetical protein ESA_03247 [Cronobacter sakazakii ATCC BAA-894]
          Length = 488

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 106/277 (38%), Gaps = 48/277 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V  I   +GL  +F  G    + +     RL   S   +A+A   
Sbjct: 122 IAVAGTHGKTTTTAMVSSIYAEAGLDPTFVNG--GLVKAAGTHARLGN-SRYLIAEADES 178

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F NL +  I++      Y  A M 
Sbjct: 179 DASFLHLQPMVAIVTNIEADHMDTYH--------GDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  ELLP+    I      +S++   R  N        G QG F  +++     +K
Sbjct: 231 VDDPVIRELLPRVGRQITTY--GFSEDADVRVEN----YRQTGAQGHFTLVRQ-----DK 279

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++ +++           PG     NA  A  +    GI+   +L  LE       RF+F
Sbjct: 280 PELHVTLNA---------PGRHNALNAAAAVSVATEEGIEDDAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGRIYV--DYAHTSNSLEMILKNIR 377
           +G       N + G   +  DY H    ++  ++  R
Sbjct: 331 LGEFPLANVNGKSGTAMLVDDYGHHPTEVDATVRAAR 367


>gi|90423695|ref|YP_532065.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisB18]
 gi|118595684|sp|Q216E0|MURD_RHOPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90105709|gb|ABD87746.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisB18]
          Length = 466

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + +++G  +   G   T         L+   P          
Sbjct: 117 VAITGTNGKSTTTALIAHLLRQAGFDTQMGGNIGTAI-------LSLEPP---------- 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  HV VE SS+ +D      +    G   N+  DH+D H + + Y   K RL    
Sbjct: 160 -AAGRVHV-VEMSSYQIDL--TPSLDPSVGILLNVTEDHLDRHGSIEHYAAVKQRLVAG- 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           +P    AI+  DD +S    +R    G  VL
Sbjct: 215 VPDGGTAIVGVDDDFSATAAERVALDGKTVL 245


>gi|330957969|gb|EGH58229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 486

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 167/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G++ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GSDVLVVSSAINTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       +  A  R ++V   G    F  L++    
Sbjct: 219 PFYGLAVMCVDDPVVREILPLVKRPTMTYGFSEEADVRAINVRQDGMLTFFTVLRR---- 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 275 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVKGLSGFQGVGRR 324

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 325 FQIYGELPVEGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQP--HRFSRTRDL 382

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 383 YDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAP 440

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 441 LVKPLLRAGDILLCQGAG 458


>gi|320157546|ref|YP_004189925.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus MO6-24/O]
 gi|319932859|gb|ADV87723.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus MO6-24/O]
          Length = 453

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 111/282 (39%), Gaps = 31/282 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVG--GVLGNFGVSARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    I        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLI------MNNLEFDHADIFDDLEAI----K 201

Query: 232 RLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           R F  L+   P     +    D    +V+ R    GC      + G+    + V    + 
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDGALADVLSR----GCWS-DQEFSGQDGEWQAVKLSKDG 256

Query: 289 QQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               + ++G+    + + L G+  V NAL+A      +G+ + L  E L +      R E
Sbjct: 257 SHFEVWLQGEQVGTVQWDLVGDHNVDNALMAIAAARHVGVTADLACEALGRFINTKRRLE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 317 LKG-EINGVAVYDDFAHHPTAIELTLAGLRNKVGDKKIIAVL 357


>gi|297583948|ref|YP_003699728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
 gi|297142405|gb|ADH99162.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
          Length = 455

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 115/292 (39%), Gaps = 58/292 (19%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +++ +TG++GK++  +    + + S  +    G    ++S   D  L  P  I + + LS
Sbjct: 112 DMIGITGSNGKTTTTTMTASMLENSPKNPKAAGNIGEVASKVADASL--PEDILVVE-LS 168

Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
               QG      H++V                     F NL   H+DYH T   Y  AK 
Sbjct: 169 SFQLQGTNRFKPHIAV---------------------FLNLIEAHLDYHGTMDDYAQAKA 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC------RVLSVG---YQGKFIHLKKV 282
           R+F     K+   I  ADD     + ++A ++ C      R++  G     G  + L +V
Sbjct: 208 RIFRN-QSKDDVLIYNADDPLVSSLAEQA-DSTCIPFSTQRIVDGGSYIKDGDIVVLGEV 265

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               +                F LPG++ + N L AA   +  G D   V   L     V
Sbjct: 266 LMRRDD---------------FSLPGDYNLSNGLAAATAAMKAGADPEQVRHVLASFEGV 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
             R ++V T +  G  Y + +  +N +   +K +      RII++ G G DR
Sbjct: 311 KHRLQYVDTVN--GVRYFNNSKATN-VPATVKALEAFPGERIILIAG-GLDR 358


>gi|284039185|ref|YP_003389115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
 gi|283818478|gb|ADB40316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
          Length = 449

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 16/132 (12%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVV 73
           I  LS   +  + ++   VS+D+R I    +F+A+ G   DG+ F  QA+A GA  A+V 
Sbjct: 3   IGMLSTEQLYHKFQECTGVSTDTRRITPDCLFIALKGGNFDGNQFAEQALASGARYALVD 62

Query: 74  SSAYSLQD-FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-----ILAVTGTSGKS 127
            +A + +D  S T R    +LV D       L A +   +H        ++ +TG++GK+
Sbjct: 63  DAAVAERDRASGTDRC---LLVAD------GLTALQDLARHHRQTFTFPVIGLTGSNGKT 113

Query: 128 SVASFVQQICQR 139
           +    +  +  +
Sbjct: 114 TTKELIAGVLSK 125


>gi|218547545|ref|YP_002381336.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ATCC 35469]
 gi|218355086|emb|CAQ87693.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia
           fergusonii ATCC 35469]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L ++   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDAECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|167627720|ref|YP_001678220.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668292|ref|ZP_04755870.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876824|ref|ZP_05249534.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597721|gb|ABZ87719.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842845|gb|EET21259.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 940

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 157/400 (39%), Gaps = 51/400 (12%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + +   + YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +     
Sbjct: 481 IDMLIPKEYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKI---VGLTTTDGVYINGKL 537

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                      A   L    V    +E +  GL +  +       G+  N+  DH+    
Sbjct: 538 TVAGDTTGPTSAQMVLKDPSVEMAILETARGGLLRSGMGYDYCNVGACLNVSSDHLGLKG 597

Query: 222 TQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIH 278
                  AK++    ++P+ +   A++ ADD     V+K +     + +L V    +   
Sbjct: 598 INTLEDLAKVK---SIVPQAAKDVAVLNADDP---NVLKMSAKVTAKHILYVTMNPEHAL 651

Query: 279 LK-------KVCAIH---NKQQVTISVEGKDFDFLFP--LPGEFQ------VYNALVAAG 320
           +K       K C I    N   +TI         L+   +P   +      V N++ A  
Sbjct: 652 VKQHIRAGGKACIIEKGVNGDMITIFDNNVHIPVLWTHLIPATMEGKAIHNVQNSMFAIA 711

Query: 321 LCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +C ++G+    + + L       +  PGR  +   +    ++ +DY H   +++++ + I
Sbjct: 712 ICYSMGMSLDDLRDGLRTFVTSFYQAPGRMNWFEEHPF--KVLMDYGHNPAAIKLVSQMI 769

Query: 377 RTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH 434
             +  SG+ I V    GDR       + K A    D  I   DD+ R     +I   +  
Sbjct: 770 DNMEFSGKKICVLASPGDRRDQDVYEIAKTAAPYYDYFICKGDDDTRGRADGEIPRMLKE 829

Query: 435 GIPGFIEKG---NRIEAIRT-------AIEMLNKQDVLVV 464
           G+   IE G   +RIE I++       A+ M    D++V+
Sbjct: 830 GL---IEAGVDASRIETIQSEQKAVDHALSMAQDGDLVVI 866


>gi|119512793|ref|ZP_01631862.1| Cyanophycin synthetase [Nodularia spumigena CCY9414]
 gi|119462565|gb|EAW43533.1| Cyanophycin synthetase [Nodularia spumigena CCY9414]
          Length = 876

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   S E +   +R  T+G  I V G  GDR       +GK++ D+ D  IV +D+
Sbjct: 718 VDYAHNPASYEALGSFVRNWTTGERIGVVGGPGDRRDEDFVTLGKLSADIFDYIIVKEDD 777


>gi|32490954|ref|NP_871208.1| hypothetical protein WGLp205 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173033|sp|Q8D2Z7|MURC_WIGBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25166160|dbj|BAC24351.1| murC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 475

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 25/196 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+ +DH++ +Q            F   +P    +++  DD   K+++   +    ++++
Sbjct: 186 TNIEKDHLESYQGNFKKLKESFIKFLHNIPFYGYSVLCLDDIEIKKIIPLINK---KIVT 242

Query: 270 VGYQ-------GKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            G+         KF    KK+  I     V I  + +   F+  L G+    N   A  +
Sbjct: 243 YGFNRNSDFCITKFFQSNKKIIFI-----VYIKHQKRYLKFVSNLLGKHNALNITAAITI 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT------NSRGGRIYV--DYAHTSNSLEMIL 373
            I  GI   ++L  ++K   +  RF+F+        N++ G I +  DY H    L++ +
Sbjct: 298 AIKEGIKYNIILNSIKKFPGINRRFDFINKYDLSNLNNKKGTITIVDDYGHHPTELKLTI 357

Query: 374 KNIRTITSG-RIIVVF 388
           K+++ I +  R+I++F
Sbjct: 358 KSVKKIWNKRRLIMIF 373


>gi|171316209|ref|ZP_02905432.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098623|gb|EDT43420.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 465

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 120/309 (38%), Gaps = 47/309 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +       +  + +V        L   RL     +  +A+ GT GK
Sbjct: 64  GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELM--RL-----KQGIAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+   
Sbjct: 117 TTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLNLYP 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  V                        TN+  DH+D +    A        F + LP  
Sbjct: 174 VIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRLPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-D 299
             A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG+  
Sbjct: 211 GSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREGRAP 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGR 357
              +  LPG   V NAL A  +   +G+    +   L + + V  RF+  G   ++ GG+
Sbjct: 268 LAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQ 327

Query: 358 IYV--DYAH 364
             +  DY H
Sbjct: 328 YTLIDDYGH 336


>gi|323694259|ref|ZP_08108435.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
 gi|323501732|gb|EGB17618.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
          Length = 459

 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 147/381 (38%), Gaps = 58/381 (15%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           A+GA       A +++D      ++A I  + P  +    R    +  + L G+  +N  
Sbjct: 52  AKGAVVYYGQKAENIKDGIDAVVYTAAIHEDNPEFMEVKRRGIPMMSRAELLGQMMKNYR 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V +I   +  ++  I     ++S   + R+  P   ++ +A  
Sbjct: 112 EAIAIAGTHGKTTTTSMVTEIFLEAD-NNPTISVGGILNSIGGNIRVGGPE-FFVTEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S    + ++                       N+  DH+D+ +          R F 
Sbjct: 170 YTNSFLSFYPTMAV-------------------ILNIEEDHLDFFKNIDD-IRRSFRQFI 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTI 293
           E +P+    I+       +E+      A  +V++ G   +  +     V   + +    +
Sbjct: 210 EKVPENGTIIMNGTIENWRELTA---GAAGKVVTFGNSKENDYSFDAVVYDEYARPSFDL 266

Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++G+  + +   + GE  VYNAL A    IA+ ++S   LE   +     G  +F GTN
Sbjct: 267 YIKGEKKERISLGVQGEHNVYNALGA----IAVAMESGAGLEAAGR-----GLLKFTGTN 317

Query: 353 SR--------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            R        G  I  DYAH    +E  LK        RI   F          +  M +
Sbjct: 318 RRFEKKGELKGITIIDDYAHHPQEIEATLKAAENYPHKRICCAFQP--HTYTRTKAFMKE 375

Query: 405 I--ALDLADIAIVTDDNPRSE 423
              AL LAD  ++TD  P  E
Sbjct: 376 FAQALSLADCVMLTDIYPARE 396


>gi|300774444|ref|ZP_07084307.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
 gi|300506259|gb|EFK37394.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
          Length = 445

 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 149/357 (41%), Gaps = 51/357 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           I+A+TG++GK++  S +  I +  GL+   +G    I  SFA+                 
Sbjct: 103 IIAITGSNGKTTTTSLIYYILKNDGLN---VGLGGNIGYSFAKQ---------------- 143

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
            ++ +   +  +E SS  LD   +   +       NL +DH+D Y+   + Y  AK R+ 
Sbjct: 144 -VADENHEYYVLEVSSFQLDD--IQNFRPYISLLLNLSQDHLDQYNYNYEEYALAKFRIA 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVG---YQGKFIHLKKVCAIHNKQQ 290
           E     ++  I   DD  SK ++++    A     S      +G F++  ++  +  K +
Sbjct: 201 EN-QENDNFFIYNKDDEMSKNLLEKLEIKAKMIPFSTKEKLQEGGFVNEDEIV-VKMKDE 258

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ V+         L G   V N+L A+     + I++  +   L     V  R EFV 
Sbjct: 259 FSMKVDE------LSLLGNHNVANSLAASIAGKILEINNESIRHSLMTFQAVEHRLEFV- 311

Query: 351 TNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALD 408
           T   G +   D   T+ N+    L++++T T      V+  GG D+      I   +   
Sbjct: 312 TEIDGVKYINDSKATNVNATYYALESMKTPT------VWIVGGLDKGNDYTEIEDLVKRK 365

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  I  +  DN +  D  K + E I+      +  +  EA+R +  +  K D ++++
Sbjct: 366 VKAIVCLGIDNKKIIDFFKDKKEFIY------DTSSMEEAVRISKSLAKKGDTVLLS 416


>gi|229490474|ref|ZP_04384315.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodococcus
           erythropolis SK121]
 gi|229322764|gb|EEN88544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodococcus
           erythropolis SK121]
          Length = 507

 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S  V +++VE SS  L  H    ++  AG   N+  DH+D+H    AY  AK R     
Sbjct: 170 TSPRVEYLAVELSSFQL--HWAPSVRPDAGVVLNVAEDHLDWHGGMSAYAEAKSRALSGR 227

Query: 238 LPKESPAIIYADDAYSKEVMKRA 260
           +     A++  DDA + E+  RA
Sbjct: 228 V-----AVVGLDDAIASELGTRA 245


>gi|78065122|ref|YP_367891.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
 gi|109892696|sp|Q39JW9|MURC_BURS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77965867|gb|ABB07247.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
          Length = 465

 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 125/312 (40%), Gaps = 51/312 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A+VVS+A         +RS+ P ++    ++   +  + +  +    +  +A+ GT
Sbjct: 63  EGANAVVVSTA---------VRSDNPEVLAARAKRVPIVQRAVMLAELMRLKQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178
            GK++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLN 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V                        TN+  DH+D +    A        F + L
Sbjct: 171 LYPVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRL 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P    A++  DD   ++++        R  LS   Q   +  + + A   +   T+  +G
Sbjct: 208 PFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIRDG 264

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR 354
           +     +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G    + 
Sbjct: 265 RAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPAAD 324

Query: 355 GGRIYV--DYAH 364
           GG+  +  DY H
Sbjct: 325 GGQYTLIDDYGH 336


>gi|322387387|ref|ZP_08060997.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
 gi|321141916|gb|EFX37411.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
          Length = 450

 Score = 40.8 bits (94), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 153/382 (40%), Gaps = 49/382 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQ---RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAK 172
           I+ +TG++GK++  + + ++     ++GL S  IG P S ++  A D          L  
Sbjct: 114 IVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYPASQVAQTATDKDT-------LVM 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            LS     G+     E             I +I    TNL   HIDYH + + Y  AK  
Sbjct: 167 ELSSFQLMGIQEFHPE-------------IAVI----TNLMPTHIDYHGSFEDYVAAKWN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +   +   +   + + +   +KE+  +  NA     S   +    +L+        ++V 
Sbjct: 210 IQSNMTAADYLVLNF-NQELAKELATKT-NAAVVPFSTLEKVDGAYLEDGLLYFRGEKVM 267

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            + E         +PG   V NAL    +    G+D+  + E L     V  R +FV   
Sbjct: 268 AADE-------IGVPGSHNVENALATIAVAKLRGVDNETIKETLSAFGGVKHRLQFV-DQ 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G + Y D    S ++    K +    + ++I++ G G DR      ++  I   L  +
Sbjct: 320 INGVKFYND--SKSTNILATQKALSGFDNSKVILIAG-GLDRGNEFDELVPDIT-GLKKM 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            I+       +  E+I+         +++  +  +A R A E+  + DV++++   + + 
Sbjct: 376 VIL------GQSAERIKRAADKAGVAYVDATDIADATRKASELAEEGDVVLLS-PANASW 428

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            +  N E +  +  D + E+ G
Sbjct: 429 DMYANFEVRGDLFIDTVAELKG 450


>gi|330877132|gb|EGH11281.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964058|gb|EGH64318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 486

 Score = 40.8 bits (94), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 167/438 (38%), Gaps = 90/438 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T    FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYGGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 219 PFYGLAVMCVDDPVVREILPLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 275 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 324

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           F+  G     GG + +  DY H    +  ++  +R      R+++V+     R    R +
Sbjct: 325 FQVYGELPVEGGNVMLVDDYGHHPREVAAVISAVRGGWPDRRLVMVYQP--HRFSRTRDL 382

Query: 402 MGKIALDLAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  LAD  + ++ +  P  E+  P      + H I       P +IE+G  +E   
Sbjct: 383 YDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNLCHSIRQRGQLDPIYIERG--VELAP 440

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 441 LVKPLLRAGDILLCQGAG 458


>gi|114562573|ref|YP_750086.1| FolC bifunctional protein [Shewanella frigidimarina NCIMB 400]
 gi|114333866|gb|ABI71248.1| FolC bifunctional protein [Shewanella frigidimarina NCIMB 400]
          Length = 425

 Score = 40.8 bits (94), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 86/206 (41%), Gaps = 33/206 (16%)

Query: 287 NKQQVTISVEGKDFDF--------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL-- 336
           N+   T+   G +F++        L+      Q Y  L    L +A       +L H+  
Sbjct: 218 NQLHTTLYRVGHEFNYHKNQTQPALWHFESARQSYTGLTVPRLPLANAASVVALLSHIWP 277

Query: 337 --EKLHV--------VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              + H+        + GR E V   S+   + +D AH  +++  + + ++     RI+ 
Sbjct: 278 QISQQHINQGLQQAQLAGRLEQV---SQQPLVLLDVAHNPHAVRYLAQQLQAYQGRRIVA 334

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-----IHGIPGFIE 441
           +  CG  +D+  + ++  +A  ++   +V+ DNPR    + +R  +        +  F +
Sbjct: 335 L--CGMLKDKDIKSVLATLAEQISHWNLVSLDNPRGASAQALRQALPNDGSCEHVSEFAD 392

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGK 467
             +  +AI+  +   N  DV++V G 
Sbjct: 393 IASAWQAIQATV---NADDVVIVFGS 415


>gi|330994422|ref|ZP_08318347.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
 gi|329758422|gb|EGG74941.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
          Length = 482

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D+  T++A   A    F   +P    A++  D    ++++ R  +   R+++
Sbjct: 182 TNMDPEHLDHWGTEEA-MQAAYDQFVSNIPFYGFAVLCIDHPAVQQMIPRLSDH--RIIT 238

Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISV---------EGKDFDFLFPLPGEFQVYNALVAA 319
            G+  +  +  +KV  I +K   T  V           +   F  P+ G   V NAL A 
Sbjct: 239 YGFSPQADVRAEKV--ITDKLGATFEVVITNRNRNRSRRAGPFRLPMLGHHNVQNALAAI 296

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   + ID A +         V  RF   G  + G  I  DY H    +  +LK  R  
Sbjct: 297 AVGTEMEIDDATIRSAFAAFRGVKRRFTRTG-ETGGITIIDDYGHHPVEIAAVLKAARQA 355

Query: 380 TSGRIIVVF 388
            +G +I V 
Sbjct: 356 GAGNVIAVM 364


>gi|326333495|ref|ZP_08199736.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
 gi|325948695|gb|EGD40794.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
          Length = 488

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 25/134 (18%)

Query: 105 FASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
            A RL  + P+N    LAVTGT+GK++    +  I + +GL S  +G             
Sbjct: 121 LAWRL--RDPDNAAPWLAVTGTNGKTTTVQMLDNILRTAGLRSVAVGNVGL--------- 169

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                PI  A     +  +     +VE SS  L  H    +   A    N+  DH+D++ 
Sbjct: 170 -----PIVEA----VMDPEPYDVFAVELSSFQL--HYTSSMAAEAAVVLNIAEDHLDWYP 218

Query: 222 TQQAYFNAKMRLFE 235
           + + Y   K R++E
Sbjct: 219 SMEEYAADKGRVYE 232


>gi|322374681|ref|ZP_08049195.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
 gi|321280181|gb|EFX57220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
          Length = 450

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 115/286 (40%), Gaps = 49/286 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG---LSSFQIG-PTSTISSFAQDNRLTTPSPIYLAK 172
           I+ +TG++GK++  + + ++   +G   L S  IG P S ++        T  +   L  
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQVAQ-------TATAKDTLVM 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            LS     GV     E             I +I    TNL   HIDYH + + Y  AK  
Sbjct: 167 ELSSFQLMGVQEFHPE-------------IAVI----TNLMPTHIDYHGSFEEYVAAKWN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNK 288
           +  ++   +   + +  D  +KE+  +       V+    Q    G ++   ++C     
Sbjct: 210 IQNKMTAADFLVLNFNQD-LAKELASKTQ---ATVVPFSTQEKVDGAYLEDGQLC--FRG 263

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + V  + E         +PG   V NAL A  +    G+D+  + E L     V  R +F
Sbjct: 264 EVVMAASE-------IGVPGSHNVENALAAIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           V    +G + Y D    S ++    K +    + ++I++ G G DR
Sbjct: 317 V-DEIQGVKFYND--SKSTNILATQKALSGFDNSKVILIAG-GLDR 358


>gi|261378426|ref|ZP_05982999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145204|gb|EEZ71622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
          Length = 452

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   +A        
Sbjct: 8   FICQALNLPMPSENKSVSRIVTDSRDIRVGDVFFALAGERFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             I +R
Sbjct: 120 AAILRR 125


>gi|190572802|ref|YP_001970647.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia K279a]
 gi|229620424|sp|B2FNN8|MURC_STRMK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190010724|emb|CAQ44333.1| putative UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas
           maltophilia K279a]
          Length = 478

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 129/331 (38%), Gaps = 42/331 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           G + +VVSSA         IR + P L+   +++   +  + +  +       +AV GT 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    +    GL      PT  I                L  A +     G   
Sbjct: 125 GKTTTTSLTAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +  I    TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLMSI---ITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKDFDF 302
           ++  DD    EV   A      V+S G   +  +  + V    ++ + T+ + +G   + 
Sbjct: 224 VLCIDD---PEVAALAARTPRHVMSYGMSPQADVRAENVVQEGSRMRFTLRLPQGTSQEV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
           +  LPG   V NAL AA +   +G+    +   LE    V  RF  +G  T + G ++ +
Sbjct: 281 VLALPGRHNVLNALAAAAVGWQLGVAPDAIARALEGFAGVGRRFNDLGEVTTASGAKVRI 340

Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             DY H  + LE +    R      R++V F
Sbjct: 341 IDDYGHHPSELEAVFAAARGGWADKRLVVAF 371


>gi|258593041|emb|CBE69352.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [NC10 bacterium 'Dutch sediment']
          Length = 568

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 118/296 (39%), Gaps = 44/296 (14%)

Query: 72  VVSSAYSLQDFSA--TIRSNTPILVVDNT--RKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +V+  +++ + +A   + +N  +  ++ T  R+F +   +R+  ++P  ++ +TG+ GK+
Sbjct: 169 LVAGLFTVSEVAAGTILAANASLAPLERTINRRFYAQATARMR-RYPGEVIGITGSYGKT 227

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT---- 183
           +   F+           F+                 TP  +     +  +  +G+     
Sbjct: 228 TT-KFITAALLHGRYPVFK-----------------TPDGVNTTMGIVRVVREGLRDDHR 269

Query: 184 HVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              VE +++G  + R   + ++   G  T +G  H++   T +    AK  L + L P +
Sbjct: 270 FFVVEVAAYGPGEIREVCEVLRPRIGILTAVGVQHLERFGTPERIAEAKYELIDSL-PPD 328

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI+ ADD     + +RA   G RVL  G        ++   +  K  VT+S +G  F 
Sbjct: 329 GLAIVNADDPVCLRLAERARQEGRRVLLYGIGED----ERALGVRGK-DVTLSSKGSAFR 383

Query: 302 ---------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                    F   L G + + N L A    +  G+    +   +  L   P R E 
Sbjct: 384 VETGHGAAMFETRLLGGWNIGNILGATAAALECGVPLEEIAAGVRALAPAPKRLEI 439


>gi|167586015|ref|ZP_02378403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia
           ubonensis Bu]
          Length = 292

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 25/224 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FVA+ G + D H F+    A+GA A +VS   +            P 
Sbjct: 29  VSTDSRTVGPGDLFVALKGERFDAHDFLADVAARGAAAALVSHTPAGLAM--------PT 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +    TR  L   A     + P  ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  IEGGETRAALGALAHGWRKRFPLPVVAVTGSNGKTTVKEMIASIFAAA------VGADAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNLNNDVGLPLTLLRLNAAHRLAVIELGMNH---PGETEILARLTAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            N  R+H ++  T +A       +   L P +  A+  ADDAY+
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALAP-DGVAVFPADDAYA 230


>gi|146276746|ref|YP_001166905.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|166224720|sp|A4WQD6|MURC_RHOS5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145554987|gb|ABP69600.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 470

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I  DY 
Sbjct: 282 LPMPGDHNVSNALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVGEVG-GVTIIDDYG 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +L+  R    GR+I V
Sbjct: 341 HHPVEIAAVLRAARQAVKGRVIAV 364


>gi|295091436|emb|CBK77543.1| folylpolyglutamate synthase/dihydrofolate synthase [Clostridium cf.
           saccharolyticum K10]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 21/173 (12%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P   ++Q  NA++A      +GI    V E L+K  V PGR E +        +Y+D AH
Sbjct: 274 PFAAQYQAVNAMLAVQAAEILGIPERAVREGLQKT-VWPGRMEEIMPG-----VYLDGAH 327

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTD----- 417
               +    +   +++  R I++F    D++  +   M +I L     D+ I+T      
Sbjct: 328 NEGGIRAFARAAASLSGKRKILLFAVSSDKEYRE---MAEILLREFAPDVLILTQIAYGR 384

Query: 418 --DNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             D  R E+   E +     HG P    + +  EA+ TA++   ++D +  AG
Sbjct: 385 GLDIHRLEEASREAMAKAGGHG-PRLFVRPSAEEALLTALDEKGEEDTVFCAG 436


>gi|328675940|gb|AEB28615.1| Cyanophycin synthase II [Francisella cf. novicida 3523]
          Length = 561

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 28/295 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++       IC+ +G  +   G TST      D  +              L++
Sbjct: 177 VTGTNGKTTTIRLTDYICRVAGKLT---GYTSTDWVKVNDELIDEGDYSGPTGHQFVLTN 233

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEEL 237
           + V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK  +F   
Sbjct: 234 KKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAKSIVFRA- 292

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK---VCAIHNKQQVTI 293
           L + S  +I  D++Y KE   +   A   V     Q     +L K    C + +   V +
Sbjct: 293 LGQGSHGVINLDNSYMKERFDKLSCAKIVVTQNPQQHDMEYYLSKADYACIVEDGNFVWV 352

Query: 294 SVEGKDFDFLFPLP---------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP- 343
               K    + P+           +  + NA++A  L   +GI   ++ + L      P 
Sbjct: 353 EANSK--KVILPVVEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKALRSYSNDPK 410

Query: 344 ---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
              GR      +++     +DYAH    +E +L  ++     G+  ++ G  GDR
Sbjct: 411 VNRGRANVFEWDNKVA--VLDYAHNEAGIEALLNMVKAYDKGGKKYLMIGTTGDR 463


>gi|288553163|ref|YP_003425098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
 gi|288544323|gb|ADC48206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
          Length = 450

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 36/238 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +++A+TG++GK++  + + ++ + S  +    G   T+S        +    +  A +  
Sbjct: 113 DMIAITGSNGKTTTTTLIYEMLKNSAKNPLIAGNIGTVSCDVAKGAASDDVIVLEASSFQ 172

Query: 176 YLSSQGV-THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            L ++    +VSV                       NL   H+DYH T++ Y  AK ++ 
Sbjct: 173 LLGTENFHPNVSV---------------------LLNLFDAHLDYHGTKEEYVAAKSKIT 211

Query: 235 EELLPKESPAIIYA-DDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 E    +Y  DD    +V +++  A        V  +G +++     +I+ K Q+
Sbjct: 212 AN--QTEDDVFVYNLDDPLVSQVAEKSKAAKLPFSTKEVVSEGVYVNQG---SIYFKDQL 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            I++          LPG   V N L A G  + +G     +   L+    V  R +FV
Sbjct: 267 IIALSE------VVLPGSHNVENILAAVGAAMTMGAKVTQIQHVLKTFSGVEHRLQFV 318


>gi|225552447|ref|ZP_03773387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
 gi|225371445|gb|EEH00875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
          Length = 463

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +  V S  +   + 
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSREHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  K     +A+TG++GK++    +  I  +
Sbjct: 84  IKYLNDNEELVFLLTSNVIKLLQTLASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK 142


>gi|330997824|ref|ZP_08321659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569712|gb|EGG51477.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 109/262 (41%), Gaps = 49/262 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I +++G   + +G    I                 + AL  
Sbjct: 105 MICITGSNGKTTTTSLIYHIFKKAG---YNVGLAGNIGQ---------------SLALQ- 145

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           ++ +   +  +E SS  LD   +   +       N+  DH+D Y    Q Y +AKMR+ +
Sbjct: 146 VAEKDYDYYVIELSSFQLDN--MYRFRANIAVLLNITPDHLDRYDHCMQNYVDAKMRILQ 203

Query: 236 ELLPKESPAIIYADD--AYSKEVMK---RAHNAGCRVLS----VGYQGKFIHLKKVCAIH 286
               +E+ A +Y +D     KE+ K   +A      +L     +GY     ++ +     
Sbjct: 204 N--QEETDAFVYWNDDPIIRKELEKYQIKAKKCPFSILKKEGMIGYLADGQYVIEYPTPF 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N +Q ++++ GK             +YN+L A       G+ + ++ + L     V  R 
Sbjct: 262 NMEQESLALTGK-----------HNMYNSLAAGITADIAGVKNEVIRQSLSDFEGVEHRL 310

Query: 347 EFVGTNSRGGRIYVDYAHTSNS 368
           E V    RG    VDY + S +
Sbjct: 311 EKV-VRVRG----VDYINDSKA 327


>gi|226307041|ref|YP_002767001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodococcus
           erythropolis PR4]
 gi|226186158|dbj|BAH34262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodococcus
           erythropolis PR4]
          Length = 507

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S  V +++VE SS  L  H    ++  AG   N+  DH+D+H    AY  AK R     
Sbjct: 170 TSPRVEYLAVELSSFQL--HWAPSVRPDAGVVLNVAEDHLDWHGGMSAYAEAKSRALSGK 227

Query: 238 LPKESPAIIYADDAYSKEVMKRA 260
           +     A++  DDA + E+  RA
Sbjct: 228 V-----AVVGLDDAIASELGTRA 245


>gi|170731884|ref|YP_001763831.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           MC0-3]
 gi|229486474|sp|B1JV79|MURC_BURCC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169815126|gb|ACA89709.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 121/310 (39%), Gaps = 47/310 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A+VVS+A    +       +  + +V        L   RL     +  +A+ GT G
Sbjct: 63  EGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELM--RL-----KQGIAIAGTHG 115

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+  
Sbjct: 116 KTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLNLY 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V                        TN+  DH+D +    A        F + LP 
Sbjct: 173 PVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRLPF 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
              A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG+ 
Sbjct: 210 YGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREGRA 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGG 356
               +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   ++ GG
Sbjct: 267 PLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSADGG 326

Query: 357 RIYV--DYAH 364
           +  +  DY H
Sbjct: 327 QYTLIDDYGH 336


>gi|99080524|ref|YP_612678.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
 gi|122984382|sp|Q1GIV0|MURC_SILST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|99036804|gb|ABF63416.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
          Length = 469

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 36/198 (18%)

Query: 210 TNLGRDHI----DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--- 262
           TN+  +H+    D+ + +  ++      F   LP    A+   D A  + ++ R  +   
Sbjct: 185 TNIDPEHMEHWGDFDRLRDGFYE-----FVSNLPFYGLAVCCTDHAEVQALVGRITDRRV 239

Query: 263 --------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVY 313
                   A  R +++ Y+G   H            + +  EG+  +    P+PG+  V 
Sbjct: 240 VTYGFNAQADVRAVNLTYKGGVAHF----------DILLQAEGQKIEGCTLPMPGDHNVS 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  +C  +G+    +   L     V  RF  VG    G  I  DY H    +  +L
Sbjct: 290 NALSAVAVCRHLGMKREEIRTALAAFGGVNRRFTKVG-EVDGVTIIDDYGHHPVEIAAVL 348

Query: 374 KNIR----TITSGRIIVV 387
           K  R    T   GR+I V
Sbjct: 349 KAARQAIGTEGEGRVIAV 366


>gi|238924607|ref|YP_002938123.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
 gi|238876282|gb|ACR75989.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
          Length = 463

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 25/223 (11%)

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S G T    E SS  L+   +D  K    +  N+  DH++ H T + Y  AK     E +
Sbjct: 165 STGETVTVAEISSFQLET--IDTFKPHVSAILNITPDHLNRHHTMENYIRAK-----EDI 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-------QGKFIHLKKVCAIHNKQQV 291
            K   A  Y    Y  EV+ R   A C    + +       +G ++    +   H+  + 
Sbjct: 218 TKNQTADDYCVLNYEDEVL-RDFAAKCPAKVIFFSSKSELSEGFYLDGDIIIYAHDGVRD 276

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++  + + L    G+    N + A  + I+ G+    ++E L+    V  R E+V T
Sbjct: 277 EV-IDVNELNLL----GKHNFENVMAACAMSISFGVPMDKIVEVLKVFKAVEHRIEYV-T 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
             RG R Y D   T+   +  ++ IR +   R  ++ G G D+
Sbjct: 331 EKRGVRFYNDSKGTNP--DAAIQGIRAMN--RPTLLIGGGYDK 369


>gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 111/263 (42%), Gaps = 42/263 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  VS+D+R I  G +FVA+ G + DGH ++        EA    +A ++    A   +
Sbjct: 26  ELAGVSTDTRTIVPGALFVALRGERFDGHAYL-------GEASAKGAAAAVVAHGAAAGA 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-------CQRSG 141
             P+L V +T   L   A     +    ++ VTG++GK++    +  I        +  G
Sbjct: 79  PLPVLAVPDTLAALGAIARHHRRRFHIPVVGVTGSNGKTTTREMIAGILATRGPVLKTEG 138

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + ++G   T+     ++R             S +   G+ H    A    + +  +  
Sbjct: 139 NLNNEVGVPLTLLGLGPEHR-------------SAVIEMGMNHPGEIARLAAIAEPYVGV 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + L A +       H++   T  A  +AK  L++ L   +   I+ A +A    ++KRA 
Sbjct: 186 VTLAAAA-------HLEGLGTVDAVADAKAELYQGL---QDTGIVVA-NADDPRMLKRAQ 234

Query: 262 NAGCRVLS----VGYQGKFIHLK 280
            AG R+L+     G +G  + L+
Sbjct: 235 AAGKRMLTFAAGAGRRGDVVVLE 257


>gi|82775495|ref|YP_401842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           dysenteriae Sd197]
 gi|309787236|ref|ZP_07681848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
 gi|118595691|sp|Q32K04|MURD_SHIDS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81239643|gb|ABB60353.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella
           dysenteriae Sd197]
 gi|308924814|gb|EFP70309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter heparinus DSM 2366]
 gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366]
          Length = 817

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 131/334 (39%), Gaps = 53/334 (15%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I+++  DSR +    G +F A+ G + DGH F+  A A G    V+S A   + F     
Sbjct: 28  ISKLVIDSRSVIDPDGSLFFALKGQR-DGHGFLKDAYANGIRNFVISEAKYTRLFP---- 82

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  IL+V +    L   A     ++   +L +TG++GK+ V  ++ Q+       +   
Sbjct: 83  -DANILLVQDVLLALHTIAKYNRNQYDLKVLGITGSNGKTIVKEWLYQLLAAD--HNIVR 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG----IK 203
            P S       ++++  P  ++   A+  L   G+    +  +        +D     IK
Sbjct: 140 SPKSF------NSQIGVPLSVWEITAIHTL---GIFEAGISKTD------EMDALASMIK 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN+G  H +   + +     K++LF      ++   IYA +          + A
Sbjct: 185 PNVGILTNVGEAHAEGFVSLKEKLLEKLKLF-----NDADLFIYAPE----------YTA 229

Query: 264 GCRVLSVGYQGKFIHLKK---------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           G     +  + KF   KK         V  I  K  +    +G + + L P   +  V N
Sbjct: 230 GLSTDDLPGKTKFSWSKKQQADLQILFVEPIDGKNYIRADFKGIEIECLIPFSDQASVEN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++     +A+G       + LEKL  V  R E 
Sbjct: 290 GIICWATLLALGYTPEEADKRLEKLTRVSMRLEL 323


>gi|333010584|gb|EGK30017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           VA-6]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|254805552|ref|YP_003083773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|254669094|emb|CBA07659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|261391930|emb|CAX49392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis 8013]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   +A        
Sbjct: 8   FICQALKLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSREDCVAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|251772195|gb|EES52765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 467

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 17/106 (16%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR I +G +FVA+ G + DGH  + QA A+G    VV               N P +V
Sbjct: 34  TDSRTILSGNVFVALRGLRTDGHDHLEQAAARGTTLAVVERGIP--------GVNIPQIV 85

Query: 95  VDNT----RKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           V++T    RK   L L A R  G     ++++TG+ GK++    ++
Sbjct: 86  VEDTLVALRKMGALVLAAHRRAGHR---LISLTGSVGKTTTRELIR 128


>gi|323935140|gb|EGB31507.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1520]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LEDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|15799772|ref|NP_285784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 EDL933]
 gi|15829346|ref|NP_308119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. Sakai]
 gi|168751402|ref|ZP_02776424.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755696|ref|ZP_02780703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764033|ref|ZP_02789040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168771312|ref|ZP_02796319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776932|ref|ZP_02801939.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781973|ref|ZP_02806980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168801515|ref|ZP_02826522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|195939304|ref|ZP_03084686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. EC4024]
 gi|208807723|ref|ZP_03250060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812067|ref|ZP_03253396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818888|ref|ZP_03259208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398858|ref|YP_002268696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325428|ref|ZP_03441512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254791225|ref|YP_003076062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. TW14359]
 gi|291280913|ref|YP_003497731.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|30316080|sp|Q8X9Y9|MURD_ECO57 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12512791|gb|AAG54392.1|AE005185_9 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359548|dbj|BAB33515.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767768|gb|EDU31612.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014554|gb|EDU52676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000408|gb|EDU69394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357000|gb|EDU75419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189359908|gb|EDU78327.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365875|gb|EDU84291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189376376|gb|EDU94792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|208727524|gb|EDZ77125.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733344|gb|EDZ82031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739011|gb|EDZ86693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160258|gb|ACI37691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209746564|gb|ACI71589.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746566|gb|ACI71590.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746568|gb|ACI71591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746570|gb|ACI71592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746572|gb|ACI71593.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|217321649|gb|EEC30073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254590625|gb|ACT69986.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760786|gb|ADD54747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190389|gb|EFW65039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320642127|gb|EFX11478.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. G5101]
 gi|320647490|gb|EFX16285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. 493-89]
 gi|320652824|gb|EFX21062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. H 2687]
 gi|320658213|gb|EFX25942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320663522|gb|EFX30806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320668834|gb|EFX35629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326345192|gb|EGD68935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346954|gb|EGD70688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1044]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|24111533|ref|NP_706043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 301]
 gi|62900692|sp|Q83MF9|MURD_SHIFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24050291|gb|AAN41750.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 301]
 gi|281599450|gb|ADA72434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2002017]
 gi|332762278|gb|EGJ92545.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2747-71]
 gi|332762649|gb|EGJ92914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           4343-70]
 gi|332764934|gb|EGJ95162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-671]
 gi|332768878|gb|EGJ99057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2930-71]
 gi|333009070|gb|EGK28526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-218]
 gi|333022251|gb|EGK41489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-304]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NALVA  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|313200239|ref|YP_004038897.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Methylovorus sp.
           MP688]
 gi|312439555|gb|ADQ83661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           MP688]
          Length = 460

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 102/259 (39%), Gaps = 46/259 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA   +      ++A+TG +GK++V + V ++C+ +GL +   G             
Sbjct: 99  VELFAQ--FRPRSSKVIAITGANGKTTVTTLVGEMCKAAGLKTVVAGNIG---------- 146

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                 + +  AL  + + G   V V E SS  L+      +   A +  N+  DH+D +
Sbjct: 147 ------LPVLDALRQVETDGAPDVYVLELSSFQLET--TSSLAPDAAAVLNVTEDHMDRY 198

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--- 277
                Y  AK R+ +                   +V+ R  +A CR +++  Q       
Sbjct: 199 PGMPEYAAAKARILK---------------GAGVQVLNR-EDAWCRNMALPDQPVVTFGL 242

Query: 278 ------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                 H   + A+H++  +              +PG     NAL A  LC AIG+D A 
Sbjct: 243 DLPVESHAYGLLALHDQLWLAQGAHPILHVEELRIPGLHNAANALAALALCRAIGVDWAP 302

Query: 332 VLEHLEKLHVVPGRFEFVG 350
           +   L +   +P R E+V 
Sbjct: 303 LQHVLREFKGLPHRVEWVA 321


>gi|297521714|ref|ZP_06940100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Escherichia coli OP50]
          Length = 76

 Score = 40.4 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
          +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS
Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVS 68


>gi|261367207|ref|ZP_05980090.1| UDP-N-acetylmuramate--alanine ligase [Subdoligranulum variabile DSM
           15176]
 gi|282570805|gb|EFB76340.1| UDP-N-acetylmuramate--alanine ligase [Subdoligranulum variabile DSM
           15176]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   +YNAL        +G+     +   E  H    RFE  G    G  I  DYAH 
Sbjct: 281 VPGYHNIYNALAMCCCVRPLGLKPEDAVRAAEAFHGTGRRFEIKG-ECNGAVIVDDYAHH 339

Query: 366 SNSLEMILKNIRTITSGRIIVV 387
              LE  LK  + +   R+I V
Sbjct: 340 PTELEATLKTAKGLGYQRVIAV 361


>gi|196230906|ref|ZP_03129767.1| UDP-N-acetylmuramate/alanine ligase [Chthoniobacter flavus
           Ellin428]
 gi|196225247|gb|EDY19756.1| UDP-N-acetylmuramate/alanine ligase [Chthoniobacter flavus
           Ellin428]
          Length = 766

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 32/228 (14%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMK---------RA 260
           N+  +H+DY+    A   A   +F +LL +    +I+ ADDA +  +            +
Sbjct: 191 NIEEEHLDYY----ADLAAIEVVFNQLLSQTRGKVIFSADDANATRICSTHPGAISYGES 246

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           H A  R   V  +    H + +        +T++V           PG   V N++ A  
Sbjct: 247 HTAFYRFDDVHTKDFQSHFRVLRGGEPLGAITLNV-----------PGRHNVSNSVGAIA 295

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT 378
           L   +G+  A + E LE       RFE      R  R  V  DY H  + ++  L   + 
Sbjct: 296 LATELGVPFAKIAEALESFRGARRRFEI---KYRSDRYMVVDDYGHHPSEVKATLATAKN 352

Query: 379 ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
               R++ +F      R    +   G+ A   AD+A++ D  P SE P
Sbjct: 353 TGRKRVLCMFQPHRYSRTLKLKAEFGR-AFHHADVAVIADVYPASELP 399


>gi|154509044|ref|ZP_02044686.1| hypothetical protein ACTODO_01561 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798678|gb|EDN81098.1| hypothetical protein ACTODO_01561 [Actinomyces odontolyticus ATCC
           17982]
          Length = 481

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 25/137 (18%)

Query: 105 FASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
            A RL  + P      L VTGT+GK++    + +I + +G  + Q+G   T  + A D+ 
Sbjct: 99  LAWRLQEEGPHAGRPWLVVTGTNGKTTTVGMLGEILRCAGAKAEQVGNIGTPITRAIDSD 158

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                                   +VE SS  L  H +  +  +A    N+  DH+D+H 
Sbjct: 159 AEV--------------------FAVELSSFQL--HTVRTVSPLASICLNVDADHLDWHG 196

Query: 222 TQQAYFNAKMRLFEELL 238
           + +AY   K R++E  +
Sbjct: 197 SVEAYAADKARVYENTI 213


>gi|107021639|ref|YP_619966.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116688584|ref|YP_834207.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
 gi|123371911|sp|Q1BZG2|MURC_BURCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222962|sp|A0K487|MURC_BURCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|105891828|gb|ABF74993.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116646673|gb|ABK07314.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
          Length = 465

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 121/310 (39%), Gaps = 47/310 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A+VVS+A    +       +  + +V        L   RL     +  +A+ GT G
Sbjct: 63  EGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVMLAELM--RL-----KQGIAIAGTHG 115

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  S V  +    GL  +F IG    + S   + RL T   I +A+A     S+L+  
Sbjct: 116 KTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFI-VAEADESDASFLNLY 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V                        TN+  DH+D +    A        F + LP 
Sbjct: 173 PVIEV-----------------------ITNIDADHMDTYGHDFARLKQAFIEFTQRLPF 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
              A++  DD   ++++        R  LS   Q   +  + + A   +   T+  EG+ 
Sbjct: 210 YGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQ---VRAEDIDARDGRMHFTVIREGRA 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGG 356
               +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   ++ GG
Sbjct: 267 PLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGG 326

Query: 357 RIYV--DYAH 364
           +  +  DY H
Sbjct: 327 QYTLIDDYGH 336


>gi|94984592|ref|YP_603956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deinococcus
           geothermalis DSM 11300]
 gi|118595654|sp|Q1J147|MURD_DEIGD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94554873|gb|ABF44787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deinococcus
           geothermalis DSM 11300]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           VE SS  L+  R+ G++L     TNLG DH+D H+T +AY  AK+
Sbjct: 183 VELSSFQLE--RVPGLRLPVAVITNLGVDHLDRHRTVEAYHAAKL 225


>gi|237756370|ref|ZP_04584917.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691467|gb|EEP60528.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   VYNAL    +C  + +   ++ E LE       RFE   +N     I  DYAH 
Sbjct: 270 VPGIHNVYNALATIAICNELNVPFCVIKESLENFKNAKRRFEIKYSNDI--VIIDDYAHH 327

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI-------ALDLADIAIVTD 417
              L+  L   R      RII VF       Q  R     +       A D+ DI IVT+
Sbjct: 328 PTELKATLSAARDYFKDRRIIAVF-------QPHRYSRLNVLFEEFAKAFDIPDITIVTE 380

Query: 418 DNPRSEDP 425
                E+P
Sbjct: 381 VYSAGENP 388


>gi|170731879|ref|YP_001763826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815121|gb|ACA89704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
          Length = 468

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 147/375 (39%), Gaps = 32/375 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+DSR +  G +FVA+ G + D H F+          +    A +     A      
Sbjct: 27  DRVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPAGIAM 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P++    TR  L   A     + P  ++AVTG++GK++V   +  I   +      +G  
Sbjct: 79  PMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFAAA------VGAD 132

Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           + +++    +N +  P  +    A   L+    G+ H      +  L +     + L+  
Sbjct: 133 ARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNH---PGETEVLARLTAPTVALV-- 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A       +    LP +  A+  ADDAY+   + R    G R+
Sbjct: 188 --NNAQREHQEFMATVEAVALEHAAVIHA-LPPDGVAVFPADDAYAG--IWRVAATGNRI 242

Query: 268 LSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L    +  +  +  +V    +  ++ I              GE    NAL A    +  G
Sbjct: 243 LDFALHDAERQNDAQVVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAATAAALGAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382
           +  + + + LE    V GR +       S  G   VD  + +N  S+   +  +    + 
Sbjct: 303 VALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDVLAAHPAP 362

Query: 383 RIIVVFGCGGDRDQG 397
           R++V+   G   D+G
Sbjct: 363 RVLVIGDMGEVGDEG 377


>gi|91209152|ref|YP_539138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UTI89]
 gi|110640301|ref|YP_668029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 536]
 gi|117622374|ref|YP_851287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|191174589|ref|ZP_03036083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218557028|ref|YP_002389941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli S88]
 gi|237704237|ref|ZP_04534718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|300984510|ref|ZP_07177002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|306815314|ref|ZP_07449463.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|331661134|ref|ZP_08362066.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
 gi|118595655|sp|Q0TLQ1|MURD_ECOL5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595656|sp|Q1RGA7|MURD_ECOUT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91070726|gb|ABE05607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           UTI89]
 gi|110341893|gb|ABG68130.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           536]
 gi|115511498|gb|ABI99572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|190905136|gb|EDV64781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218363797|emb|CAR01457.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           S88]
 gi|222031919|emb|CAP74657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LF82]
 gi|226902149|gb|EEH88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|281177308|dbj|BAI53638.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE15]
 gi|294492798|gb|ADE91554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           IHE3034]
 gi|300306679|gb|EFJ61199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|305850976|gb|EFM51431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|307629662|gb|ADN73966.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UM146]
 gi|312944694|gb|ADR25521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315285166|gb|EFU44611.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 110-3]
 gi|315300011|gb|EFU59249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 16-3]
 gi|323950916|gb|EGB46793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H252]
 gi|323955286|gb|EGB51059.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H263]
 gi|324012251|gb|EGB81470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 60-1]
 gi|331052176|gb|EGI24215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|331645198|ref|ZP_08346309.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
 gi|330909935|gb|EGH38445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           AA86]
 gi|331045955|gb|EGI18074.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|291525273|emb|CBK90860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale DSM 17629]
          Length = 453

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 25/223 (11%)

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S G T    E SS  L+   +D  K    +  N+  DH++ H T + Y  AK     E +
Sbjct: 155 STGETVTVAEISSFQLET--IDTFKPHVSAILNITPDHLNRHHTMENYIRAK-----EDI 207

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-------QGKFIHLKKVCAIHNKQQV 291
            K   A  Y    Y  EV+ R   A C    + +       +G ++    +   H+  + 
Sbjct: 208 TKNQTADDYCVLNYEDEVL-RNFAAECPAKVIFFSSRSELSEGFYLDGDIIIYAHDGVRD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++  + + L    G+    N + A  + I+ G+    ++E L+    V  R E+V T
Sbjct: 267 EV-IDVNELNLL----GKHNFENVMAACAMSISFGVPMDKIVEVLKVFKAVEHRIEYV-T 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
             RG R Y D   T+   +  ++ IR +   R  ++ G G D+
Sbjct: 321 EKRGVRFYNDSKGTNP--DAAIQGIRAMN--RPTLLIGGGYDK 359


>gi|227497591|ref|ZP_03927814.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces urogenitalis
           DSM 15434]
 gi|226832960|gb|EEH65343.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces urogenitalis
           DSM 15434]
          Length = 495

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 112/285 (39%), Gaps = 29/285 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D + T++A+  A +  F   L      I  A D  +  + + A   G RV++
Sbjct: 188 TNVEPDHLDTYGTREAFEEAFLD-FSRRLIAGGLLIACAQDPGALRLARAAAGEGRRVVT 246

Query: 270 --------------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQ 311
                         VG     + +++  A   + ++T+       D        +PGE  
Sbjct: 247 YGSLSPAELPDQDLVGLAHVELEVEEHPAQGTRSRLTLWTTPTSHDEPVSLELSVPGEHV 306

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +A  A    + +G     +   L        RFE  G    G R+  DYAH    ++ 
Sbjct: 307 ALDAAAAWACGVELGAQPQAMARALGAFGGTKRRFEDRGEVG-GVRVVDDYAHHPTEIQA 365

Query: 372 ILKNIRTIT---SGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    R +     GR++++F      R Q      G+ AL LAD+ +VT   P  E  E 
Sbjct: 366 LATAAREVAQARGGRLLILFQPHLFSRTQAFAERFGQ-ALSLADLVVVTAVYPAREAQED 424

Query: 428 IRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   +   +PG     +R+EA R+  +   + D+L+  G G
Sbjct: 425 FPGVSGRTVSEHVPGGRYLADRVEAARSLADAAQRGDLLLTVGAG 469


>gi|16128081|ref|NP_414630.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89106971|ref|AP_000751.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. W3110]
 gi|157159559|ref|YP_001456877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli HS]
 gi|170021556|ref|YP_001726510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ATCC 8739]
 gi|170079727|ref|YP_001729047.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188492751|ref|ZP_03000021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194439413|ref|ZP_03071490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|238899489|ref|YP_002925285.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|253774882|ref|YP_003037713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037503|ref|ZP_04871580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|254160210|ref|YP_003043318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli B str. REL606]
 gi|256025402|ref|ZP_05439267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           sp. 4_1_40B]
 gi|297519210|ref|ZP_06937596.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli OP50]
 gi|300931785|ref|ZP_07147085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|300949894|ref|ZP_07163857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300955954|ref|ZP_07168287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|301028571|ref|ZP_07191801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|301646400|ref|ZP_07246282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|307136689|ref|ZP_07496045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli H736]
 gi|312970182|ref|ZP_07784364.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|331640541|ref|ZP_08341689.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331650985|ref|ZP_08352013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|127537|sp|P14900|MURD_ECOLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|40856|emb|CAA38865.1| UDP-MurNac-L-Ala-D-Glu (MurD) (AA 1-438) [Escherichia coli]
 gi|42060|emb|CAA35933.1| unnamed protein product [Escherichia coli]
 gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|21321969|dbj|BAB96656.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K12 substr. W3110]
 gi|157065239|gb|ABV04494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           HS]
 gi|169756484|gb|ACA79183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ATCC 8739]
 gi|169887562|gb|ACB01269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188487950|gb|EDU63053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194421672|gb|EDX37682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|226840609|gb|EEH72611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|238863752|gb|ACR65750.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|242375924|emb|CAQ30605.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BL21(DE3)]
 gi|253325926|gb|ACT30528.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972111|gb|ACT37782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli B str. REL606]
 gi|253976320|gb|ACT41990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli BL21(DE3)]
 gi|260450705|gb|ACX41127.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           DH1]
 gi|284919868|emb|CBG32923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           042]
 gi|299878382|gb|EFI86593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|300317174|gb|EFJ66958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|300450726|gb|EFK14346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300460445|gb|EFK23938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|301075370|gb|EFK90176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|309700299|emb|CBI99587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ETEC H10407]
 gi|310337680|gb|EFQ02791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|315134782|dbj|BAJ41941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli DH1]
 gi|315616133|gb|EFU96752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           3431]
 gi|323939872|gb|EGB36072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E482]
 gi|323960034|gb|EGB55680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H489]
 gi|331040287|gb|EGI12494.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331051439|gb|EGI23488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|332341420|gb|AEE54754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Escherichia
           coli UMNK88]
 gi|333011476|gb|EGK30890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-272]
 gi|333021719|gb|EGK40968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-227]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|319938679|ref|ZP_08013043.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus anginosus
           1_2_62CV]
 gi|319811729|gb|EFW07995.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus anginosus
           1_2_62CV]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 69/182 (37%), Gaps = 13/182 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + S  + +Y +D   KE+ +   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQVSKGLFVYGED---KELRRVTANAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
                  FI    +          +S  GK+  +F  P  G   + NA    GL    G 
Sbjct: 224 GFKEGNDFI-AHDLLRSTTGSSFKVSFCGKELGEFKIPSFGRHNIMNATAVIGLLYTAGF 282

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIV 386
           D  LV EHL     V  RF     N  G  I  D+AH    +   L   R    S  I+ 
Sbjct: 283 DLTLVREHLATFGGVKRRFTEKVVN--GTTIIDDFAHHPTEIIATLDAARQKYPSKEIVA 340

Query: 387 VF 388
           +F
Sbjct: 341 IF 342


>gi|161511189|ref|NP_813012.2| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
 gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
          Length = 849

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 118/303 (38%), Gaps = 41/303 (13%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           E+G   +  A+ Q       +S  S+ DFS         L+V N  K L     +L   H
Sbjct: 78  ENGEWKMENAMQQDGAQPTPNSRLSILDFSN-------FLIVANPLKALQ----KLAEAH 126

Query: 114 PEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167
            EN    ++ +TG++GK+ V  ++ Q+          + P   I  S  + ++++  P  
Sbjct: 127 RENFKIPVIGITGSNGKTIVKEWLHQL----------LSPDRCIVRSPRSYNSQIGVPLS 176

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           ++    L+  +  G+    +          R+  IK   G  TN+G  H      Q+ +F
Sbjct: 177 VW---QLNEEAELGIFEAGISEMGEMGALKRM--IKPTIGILTNIGGAH------QENFF 225

Query: 228 NAKMRLFEEL-LPKESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           + + +  E+L L K+   +IY  D    S  V K    A     S     + +++ KV  
Sbjct: 226 SLQEKCMEKLTLFKDCDVVIYNGDNELISNCVAKSMLTAREIAWSCKDIERPLYISKVTK 285

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             +   +       D  F  P   +  + NAL     C+ +   +  + E + +L  +  
Sbjct: 286 KEDHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAM 345

Query: 345 RFE 347
           R E
Sbjct: 346 RLE 348


>gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
 gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 128/334 (38%), Gaps = 38/334 (11%)

Query: 27  ERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           E  I+ + +DSR +      +F A+   +  G  +IP    +G    VV+     +DF  
Sbjct: 21  EATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVVTE----EDFEK 76

Query: 85  TIR------SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                    S    L+V N  K L   A     +    I+ +TG++GK+ V  ++ Q+  
Sbjct: 77  FKNGELGKLSTLNFLIVANPLKALQKLAEIHREEFKIPIIGITGSNGKTIVKEWLHQL-- 134

Query: 139 RSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                   + P   I  S  + ++++  P  ++    L+  +  G+    +         
Sbjct: 135 --------LSPDRRIVRSPRSYNSQIGVPLSVW---QLNEEAELGIFEAGISEMGEMNAL 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYS 253
            R+  IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +IY  D    S
Sbjct: 184 KRM--IKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKDCDVVIYNGDNELIS 235

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V K    A     S     + +++ +V    +   ++      D  F  P   +  + 
Sbjct: 236 NCVAKSMLTAREIAWSRKDIERPLYISRVTKKEDHTVISYRYLDMDNTFCIPFIDDASIE 295

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           N L     C+ +   +  + E + +L  +  R E
Sbjct: 296 NVLNCLAACLYLMTPADQITERMARLEPIAMRLE 329


>gi|261823015|ref|YP_003261121.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium wasabiae
           WPP163]
 gi|261607028|gb|ACX89514.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium wasabiae
           WPP163]
          Length = 486

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 133/342 (38%), Gaps = 62/342 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+        L   R +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRAEMLAELMRFR-HG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  + V  I   +GL  +F  G    + +     RL + S   +A+A     S+L  Q +
Sbjct: 132 TTTAMVTSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADESDASFLHLQPM 188

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELL 238
             +     +  +D ++        G F NL +  I++      Y  A M     +  ELL
Sbjct: 189 VAIVTNIEADHMDTYQ--------GDFENLKQTFINFLHNLPFYGQAVMCVDDEVIRELL 240

Query: 239 PKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           P+    II   ++DDA  +        AG R    G QG F   +K   + N   VT++ 
Sbjct: 241 PRVGRHIITYGFSDDADVR-------IAGYR--QTGAQGHFTLERKDKPLLN---VTLNA 288

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----- 350
                      PG     NA  A  +    GID   +L  LE+      RF+F+G     
Sbjct: 289 -----------PGRHNALNAAAAVAVATDEGIDDESILRALERFQGTGRRFDFLGEYPLE 337

Query: 351 -TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             N   G   +  DY H    ++  +K  R      R++++F
Sbjct: 338 LVNGHSGTAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIF 379


>gi|259500989|ref|ZP_05743891.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190562|ref|ZP_07266816.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus iners
           AB-1]
 gi|309804651|ref|ZP_07698716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808562|ref|ZP_07702458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|329920439|ref|ZP_08277171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
 gi|259167683|gb|EEW52178.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308166043|gb|EFO68261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168190|gb|EFO70312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|328936115|gb|EGG32568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
          Length = 455

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 37/325 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR   A  +FV +VG + DGH ++  A+A GA A +       Q   A    N
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAAL------WQKDHANRPEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+T   L   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLI 205
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L  I   
Sbjct: 133 TQ--ANF--NNEIGVP--------ITILEMKPTTEILV--LEMGMDRAGQLHHLSEIVCP 178

Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +G  HI++  T+    +AKM + + L  KE    I+  D     +  RA    
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIFNGD--EPLLQARAQKLN 234

Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               + G+     I+     +  +    TI+       F  P+ G+  V NAL A  +  
Sbjct: 235 QLQATFGFNSTDTIYATNFNSYMHHASFTIN--DSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEF 348
             G+    + + L        R ++
Sbjct: 293 TFGVPDVEIAQALANFVPTANRMQW 317


>gi|42518884|ref|NP_964814.1| hypothetical protein LJ0959 [Lactobacillus johnsonii NCC 533]
 gi|41583170|gb|AAS08780.1| hypothetical protein LJ_0959 [Lactobacillus johnsonii NCC 533]
 gi|329667570|gb|AEB93518.1| hypothetical protein LJP_1196c [Lactobacillus johnsonii DPC 6026]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 18/129 (13%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR++ + T+     I VD AH   ++E +L  +R    G+I V+ G   D+D G  P+
Sbjct: 288 IPGRYDVIQTSPE---IIVDGAHNLQAMENLLNLVRKKKKGQIYVLLGMMKDKDLG--PV 342

Query: 402 MGKIALDLADIAIVTDDNPRS---ED-PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             K+  D   + +   D PR+   ED P++ + E       F  K N  EA  +    L 
Sbjct: 343 T-KLFKD-EKVTLTRIDYPRAARLEDFPKEAQKE-------FEYKENFEEAYTSLKNKLQ 393

Query: 458 KQDVLVVAG 466
             D+L+V G
Sbjct: 394 ADDMLLVTG 402


>gi|293408179|ref|ZP_06652019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
 gi|291472430|gb|EFF14912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|260578085|ref|ZP_05846007.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603825|gb|EEW17080.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium ATCC
           43734]
          Length = 498

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 37/211 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADD----AYSKEVMKRAHN 262
           TN+  DH+DY +T+ AY      +FE    +  P    ++  DD    A ++ ++  A  
Sbjct: 189 TNIEPDHLDYFKTEAAY----REVFENFAHRIVPGGFLVVCLDDPGSAALAENLIAGAEE 244

Query: 263 AGCRVLSV-GY---QGKFIHLK----------------KVCAIHNKQQVTISVE--GKDF 300
                 +V GY   +G   H                   V A+   ++V  + E     +
Sbjct: 245 GTPLPFTVVGYGTAEGCDAHPSVPPAAIIESTEVTAEGTVSALRLTEEVKKAAEEAAGTY 304

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V NA  AA   + +G D   V+  +     V  RFE+ GT  +   +Y 
Sbjct: 305 SLRVAIPGIHMVLNAAAAALGSVLLGADVDKVIGGIGGFDGVRRRFEYHGTR-QDVEVYD 363

Query: 361 DYAHTSNSLEMILKNIR---TITSGRIIVVF 388
           DYAH    +  +L   R       GRI+ VF
Sbjct: 364 DYAHHPTEVAAVLAAARQRVEARGGRIVAVF 394


>gi|114763032|ref|ZP_01442462.1| UDP-N-acetylmuramate--L-alanine ligase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544356|gb|EAU47364.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. HTCC2601]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  +  DY 
Sbjct: 291 LPMPGDHNVSNALAAVAVARHLGMTREEIRAALAAFGGVNRRFTRVG-EVNGVTVIDDYG 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R  + GR+I V
Sbjct: 350 HHPVEIAAVLKAARQASEGRVIAV 373


>gi|26246021|ref|NP_752060.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli CFT073]
 gi|218687965|ref|YP_002396177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ED1a]
 gi|227885007|ref|ZP_04002812.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300981125|ref|ZP_07175371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|301048480|ref|ZP_07195505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|30316043|sp|Q8FL65|MURD_ECOL6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|26106418|gb|AAN78604.1|AE016755_104 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           CFT073]
 gi|218425529|emb|CAR06312.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           ED1a]
 gi|227837836|gb|EEJ48302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300299666|gb|EFJ56051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|300409027|gb|EFJ92565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|307551932|gb|ADN44707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ABU 83972]
 gi|315294717|gb|EFU54060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 153-1]
 gi|324008323|gb|EGB77542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 57-2]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|254226619|ref|ZP_04920199.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
 gi|125620838|gb|EAZ49192.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
          Length = 506

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 114/282 (40%), Gaps = 40/282 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 201

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F NL +  ID+             
Sbjct: 202 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------- 243

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q 
Sbjct: 244 -----LPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQF 295

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +GK + +    +PG     NA  A  +     I    +L  +        RF+ +G
Sbjct: 296 TVVRKGKANLEITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLG 355

Query: 351 TNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               G  + +   DY H    +++ +K  R      R++++F
Sbjct: 356 EFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 397


>gi|302380184|ref|ZP_07268656.1| bifunctional protein FolC [Finegoldia magna ACS-171-V-Col3]
 gi|302311967|gb|EFK93976.1| bifunctional protein FolC [Finegoldia magna ACS-171-V-Col3]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 151/389 (38%), Gaps = 65/389 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSS--------------FQIGPTSTISSFAQ---- 158
           I+ V GT+GK S ++F+ Q  +  G  +               +I    +   F +    
Sbjct: 41  IIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFMRIFEI 100

Query: 159 --------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI----KLIA 206
                   D +++T   I L  A+ Y + Q   +V +E    G    RLD      + + 
Sbjct: 101 IKNTIEENDIKVSTFEFITLC-AIYYFAEQKCEYVVLEVGMGG----RLDATNATDETLL 155

Query: 207 GSFTNLGRDHIDY---HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              T +G DH +Y      + AY  A       ++ +    ++Y       +V +     
Sbjct: 156 SVITKIGLDHQEYLGNTLEEIAYEKAC------IMKQNGRCVVYDQQESVLDVFREVAEE 209

Query: 264 GCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               L   Y   F   K  ++ A HN      S + K+      L G +Q++NA +A   
Sbjct: 210 RNNKL---YICDFDEAKNIEINATHN------SFDWKNLHIETRLVGRYQLFNAQLALTA 260

Query: 322 CIAIGIDSALVLEHL---EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
              +  +  L  E +    K   +P RF+ +  N     +  D  H ++ ++ +  +I +
Sbjct: 261 IDILRDELDLSDEDIINGFKNAYIPARFDVIRHNPT---VIYDGGHNADGVKALKSSIES 317

Query: 379 IT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +    +I+ V+G   D+D      +  I  +       T D+PR+   E ++ +I     
Sbjct: 318 VFGDKKIVFVYGVLKDKDYNDEIKL--IHENAKAFVTFTPDSPRALKAEDLKKQIEVYSD 375

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             + K N  +A+  AIE   K DV+++ G
Sbjct: 376 KVVAKSNVNDAVDYAIEHF-KDDVIIIFG 403


>gi|226307038|ref|YP_002766998.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus erythropolis
           PR4]
 gi|259509779|sp|C1A0X4|MURC_RHOE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226186155|dbj|BAH34259.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus erythropolis
           PR4]
          Length = 502

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 98/256 (38%), Gaps = 48/256 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAG-- 264
           TN+  DH+DY  + +AY    +++F++ + K  P    I   DD  S ++ KR   +G  
Sbjct: 187 TNIEADHLDYFGSVEAY----VKVFDDFVDKLRPGGLLIACLDDPGSADLAKRIVASGRS 242

Query: 265 -CRVLS----------------------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             RVL                       VG +    H   V  +    Q  ++ E     
Sbjct: 243 DIRVLGYGSADAQEVEAGTAFEPVDGVEVGVRLLGFHAHDVGGV---LQFQLAGENAART 299

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG     NAL A       G ++  ++E L     V  RF+F G   RG R++ D
Sbjct: 300 VRMAVPGRHMALNALAALLAARDAGAETEEIVEGLAGFGGVHRRFQFTG-RERGVRVFDD 358

Query: 362 YAHTSNSLEMILKNIRTI------------TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           YAH    +  +L     +             +GR+IVVF            +    ALDL
Sbjct: 359 YAHHPTEVRAVLGAAADLVRPEDDSSSTNSAAGRVIVVFQPHLYSRTAAFAVEFAQALDL 418

Query: 410 ADIAIVTDDNPRSEDP 425
           AD  +V D     E+P
Sbjct: 419 ADEVVVLDVYGAREEP 434


>gi|215485254|ref|YP_002327685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312966216|ref|ZP_07780442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|215263326|emb|CAS07641.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamateligase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312289459|gb|EFR17353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|320197461|gb|EFW72075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           WV_060327]
 gi|323190230|gb|EFZ75506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           RN587/1]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|190149288|ref|YP_001967813.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262601|ref|ZP_07544231.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470255|sp|B3GZK9|MURC_ACTP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189914419|gb|ACE60671.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872024|gb|EFN03738.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 475

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 19/190 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D +        A    F   LP    A++ ADD   + VM+ A   G +VL+
Sbjct: 192 TNIEPDHMDTYGGDFEQMKATYVKFLRNLPFYGLAVMCADD---ETVMEIAPQVGRQVLT 248

Query: 270 VGYQGKFIHLKKVCAIHNKQQV-------TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G+  K  +      I + QQ         +   G+  D L  +PG+    NA  A  + 
Sbjct: 249 YGFSEKADY-----RIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNALNATAALAVA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV--DYAHTSNSLEMILKNIRT- 378
              GI +  +L  L        RF+ +G+  R  G++ +  DY H    +++ +K  R+ 
Sbjct: 304 KEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARSG 363

Query: 379 ITSGRIIVVF 388
             + R++++F
Sbjct: 364 WENKRVVMIF 373


>gi|110804152|ref|YP_687672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 5 str. 8401]
 gi|110613700|gb|ABF02367.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri 5
           str. 8401]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NALVA  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|51598838|ref|YP_073026.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBi]
 gi|51573409|gb|AAU07434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBi]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 27/168 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q+ +++   + ++G    +S  +  ++
Sbjct: 102 ISLFL--IFNKNP--IIAVTGTKGKSTLVSLLYQVLKKNYPRA-KLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGISPLIL-----------------ELSSWQL--QSLENFNPILSIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
               Y   K ++F   + + S   I  D AY K   K    A   + S
Sbjct: 198 NFDDYIIDKSKIF---VNQASGITIIQDKAYYKYFSKFESKAKVILFS 242


>gi|53803428|ref|YP_114842.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
 gi|59798159|sp|Q604V8|MURC_METCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53757189|gb|AAU91480.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
          Length = 472

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 106/284 (37%), Gaps = 44/284 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S    I    GL  +F IG    ++S   + +L              
Sbjct: 114 VAVAGTHGKTTTTSLTASILAEGGLDPTFVIG--GRLNSVGANAQL-------------- 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG   V+    S     H    I ++    TN+ +DH+  +             F  
Sbjct: 158 --GQGEYLVAEADESDASFLHLQPMIAVV----TNIDQDHMGTYGNDFGRLKDAFVEFLH 211

Query: 237 LLPKESPAIIYADDAYSKEVMKR--------AHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            +P    A++ A+D   ++++ R            G  + +VG Q   +  +        
Sbjct: 212 HVPFYGAAVLCAEDPGVRDILPRLSKPYRTYGEREGVDIRAVGIQRLGLQSRFSVLRQGA 271

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + + I++          LPG   + NAL A G+   +G+  A++   L     +  RF+ 
Sbjct: 272 EPLEITLN---------LPGYHNILNALAAIGVATELGVADAVIQRALAGFRGIGRRFQI 322

Query: 349 VGTNSRG-GRIYV--DYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
               + G G I    DY H  + L   L + R      R++VVF
Sbjct: 323 NACLNFGDGEITFVDDYGHHPSELAATLDSARNAWPDRRLVVVF 366


>gi|222153421|ref|YP_002562598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           uberis 0140J]
 gi|254766059|sp|B9DUV7|MURD_STRU0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222114234|emb|CAR42820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           uberis 0140J]
          Length = 453

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 140/372 (37%), Gaps = 86/372 (23%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFA-QDNRLTTPSPIYLA 171
           I+A+TG++GK++  + +  +    G S+   G    P S ++  A QD+ LT        
Sbjct: 114 IIAITGSNGKTTTTTMIADVLNHGGKSALLSGNIGFPASEVAMTASQDDILTME------ 167

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS     G+            D H    I LI    TNL   H+DYH +  AY  AK 
Sbjct: 168 --LSSFQLMGIK-----------DFHP--HIALI----TNLMPTHLDYHGSFDAYIQAKW 208

Query: 232 RL------------------FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            +                   +EL  K   +++Y     SKE ++ A+    ++    Y+
Sbjct: 209 NIQNNMTADDVLILNAEQDQTKELAQKTQASLVYFS---SKEKVEGAYQEDGKLF---YK 262

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           G++I   +   +                     PG   V NAL    +    GI +  + 
Sbjct: 263 GEYIMDAQSLGV---------------------PGLHNVENALATIAVAKLSGISNQAIA 301

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           E L     V  R + +GT  +    Y D    S ++    K +    + ++I++ G G D
Sbjct: 302 ETLSSFGGVKHRLQKLGT-IKDVAFYND--SKSTNILACQKALSGFDNNKVILIAG-GLD 357

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           R      +       + DI  +       E  EK++        G++E  +  +A R A 
Sbjct: 358 RGNAFDTL-------IPDIKGLKKMILLGESAEKMKEAAERAGVGYLEAKDVADATRIAF 410

Query: 454 EMLNKQDVLVVA 465
           E     D+++++
Sbjct: 411 EQAQPGDIILLS 422


>gi|229507538|ref|ZP_04397043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
 gi|229355043|gb|EEO19964.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
          Length = 506

 Score = 40.4 bits (93), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 113/282 (40%), Gaps = 40/282 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 201

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F NL +  ID+             
Sbjct: 202 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------- 243

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q 
Sbjct: 244 -----LPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQF 295

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G
Sbjct: 296 NVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLG 355

Query: 351 TNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               G  + +   DY H    +++ +K  R      R++++F
Sbjct: 356 EFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 397


>gi|161870658|ref|YP_001599831.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
 gi|161596211|gb|ABX73871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
          Length = 463

 Score = 40.4 bits (93), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+   +A        
Sbjct: 19  FICQALKLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAA----GAA 74

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D  A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 75  AVVVSREDCVAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEML 130

Query: 134 QQICQR 139
             + +R
Sbjct: 131 AAVLRR 136


>gi|149910625|ref|ZP_01899263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
 gi|149806353|gb|EDM66328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
          Length = 445

 Score = 40.4 bits (93), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 116/290 (40%), Gaps = 57/290 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++   +G+ +  IG    I +    + L    P  L     Y
Sbjct: 111 IIAITGSNGKSTVTTLVGEMANAAGVKT-AIGGNIGIPAL---DLLDVAEPYQL-----Y 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +         +E SS  L+      +K +A +  N+  DH+D +   +AY  AK+ ++++
Sbjct: 162 V---------LELSSFQLETTH--SLKAVAATVLNVTDDHLDRYPDFEAYRQAKLSIYQD 210

Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNA-----------GCRVLSVGYQGKFIHLKKV 282
              ++      +       +++V K +  A           GC  L+  YQG+ I     
Sbjct: 211 AQTIVTNRDDVLTVCATQDNRDVGKHSVGADDADYGLIQQQGCTWLA--YQGEGI----- 263

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                       +   D      + G   + NAL A  L  A G+D    L  L++   +
Sbjct: 264 ------------ISADDLQ----ITGVHNLMNALSAIALLDAAGVDRIKTLPGLKQFTGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
             R EF+   +    I    A    +    L  +++   GR+ ++ G  G
Sbjct: 308 AHRCEFIRKLNDVMWINDTKATNVGATLAALDGLKSSVKGRLYLIAGGDG 357


>gi|313898702|ref|ZP_07832237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312956586|gb|EFR38219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 523

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 35/252 (13%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQ 158
           A  L   +  +I+ +TG+ GK+SV + + ++           G  + Q+G T TI     
Sbjct: 171 AKLLRSNNALSIVGITGSYGKTSVKTILNELLSDVYYTLMTPGSYNNQMGITLTIR---- 226

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
            N+L     ++L +        G  HV      H L Q     +K   G  T++G  H+ 
Sbjct: 227 -NKLERLHEVFLCE-------MGADHVK---EIHDLMQF----VKPQYGVVTSVGAQHLA 271

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              + +   + KM++ E  LP +    +  D+AY   +   +    CR++  G      +
Sbjct: 272 TFGSMENILHEKMQMIE-CLPADGIGFVNRDNAY---IRTYSIQNTCRIVWFGMSEDADY 327

Query: 279 LKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             + C I   ++    T+  EG+   F   L G+  V N   A  +   +G+   ++   
Sbjct: 328 --RCCDIRYSEEGTSFTVIQEGQSHRFHTKLLGKHNVVNITCAIAVAHTLGVSWEIMALA 385

Query: 336 LEKLHVVPGRFE 347
           +EKL  V  R +
Sbjct: 386 VEKLPYVEHRLQ 397


>gi|302036133|ref|YP_003796455.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
 gi|300604197|emb|CBK40529.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
          Length = 460

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 151/397 (38%), Gaps = 62/397 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA +  +          I V+        L   + +G      +A+ G  GK+
Sbjct: 65  AQVVVISSAVAATNPEVVAAKARQIPVIPRAEMLAELMRLK-FG------VAIAGAHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +  S V  +  + GL    +  G  + + S A+  R      + +A+A            
Sbjct: 118 TTTSMVANVLAQGGLDPTMVIGGKVNALGSHARLGR----GDLLIAEA------------ 161

Query: 186 SVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                    D+     ++L     + TN+ R+H+D++ + +   N     F   +P    
Sbjct: 162 ---------DESDGSFLRLAPTIAAVTNIDREHLDHYGSMEK-LNDSFLEFVNKVPFYGL 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQ---QVTISVEGK 298
           A++ +DD   + ++ R      R  + G      H+   +   I  +Q   +  +   G+
Sbjct: 212 AVLCSDDERLRNLLPRVVK---RYQTYGLHEHPGHVPDFRATDISLRQWGSEFRVFFRGR 268

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +   F   +PG   V N+LVA  + + + I   L+ + L     V  RF   G  + G  
Sbjct: 269 NLGPFRLSIPGIHNVSNSLVAIAIGMELDIPVDLIRKGLAAFSGVERRFHLRGEKA-GIM 327

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415
           +  DY H    +   +   +     R++V+F     R    R +M +   A D AD   +
Sbjct: 328 VVDDYGHHPTEVRATIAAAKQGWDRRVVVLFQP--HRYSRSRDLMQEFAHAFDQADALFM 385

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           T+     E P          IPG +     +EA++ A
Sbjct: 386 TEIYAAGEQP----------IPG-VSGAKLVEAVQAA 411


>gi|268319719|ref|YP_003293375.1| hypothetical protein FI9785_1248 [Lactobacillus johnsonii FI9785]
 gi|262398094|emb|CAX67108.1| folC [Lactobacillus johnsonii FI9785]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 18/129 (13%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR++ + T+     I VD AH   ++E +L  +R    G+I V+ G   D+D G  P+
Sbjct: 288 IPGRYDVIQTSPE---IIVDGAHNLQAMENLLNLVRKKKKGQIYVLLGMMKDKDLG--PV 342

Query: 402 MGKIALDLADIAIVTDDNPRS---ED-PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             K+  D   + +   D PR+   ED P++ + E       F  K N  EA  +    L 
Sbjct: 343 T-KLFKD-EKVTLTRIDYPRAARLEDFPKEAQKE-------FEYKENFEEAYTSLKNKLQ 393

Query: 458 KQDVLVVAG 466
             D+L+V G
Sbjct: 394 ADDMLLVTG 402


>gi|209963945|ref|YP_002296860.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum centenum SW]
 gi|226706326|sp|B6IRG1|MURC_RHOCS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|209957411|gb|ACI98047.1| UDP-N-acetylmuramate--alanine ligase [Rhodospirillum centenum SW]
          Length = 482

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 13/186 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++ T +    A  R F E +P    A +  D    + ++ RA     R+++
Sbjct: 182 TNMDPEHLDFYGTFEKEREAFDR-FVENIPFYGFAALCTDHPEVQALVARADR---RIVT 237

Query: 270 VGYQGKF-IHLKKVCAIHNKQ----QVTISVEGKDFDFL---FPLPGEFQVYNALVAAGL 321
            G+  +  +    V   H       QV+  V G+         P+ G   V N+L A  +
Sbjct: 238 YGFNPQADVRAVNVEGDHRGAFYDVQVSERVTGEARTIERVHLPMYGLHNVQNSLAAIAV 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            I +GI    +     +   V  RF   G  S G  +  DY H    ++ +LK  R   S
Sbjct: 298 AINMGIADEQIRASFARFSGVKRRFTRTG-ESNGVVVIDDYGHHPVEIQAVLKAARMAGS 356

Query: 382 GRIIVV 387
           GR I V
Sbjct: 357 GRTIAV 362


>gi|153822243|ref|ZP_01974910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|126520253|gb|EAZ77476.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
          Length = 282

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ ADD  +       H
Sbjct: 15  LKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVNADDTQTFP----DH 66

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFL----------FPLPGEF 310
            A  +V++ G             +    Q +++  +G+++ F             L G  
Sbjct: 67  AAHLQVVTFG-------------VEQAAQFSLAQHQGREYLFARDEAVMACAELSLVGRH 113

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V N L    L  + G++  L L+ L+    +  R + V  N
Sbjct: 114 NVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 155


>gi|162449933|ref|YP_001612300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161160515|emb|CAN91820.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 456

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 33/189 (17%)

Query: 63  AIAQGAEAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           A+  GA+ +VVS    S     A  RS   ++      +  S F S         ++ V 
Sbjct: 65  ALFDGADLVVVSPGVPSFPALDAVARSGREVI---GELELASRFVS-------APVVLVG 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  +    + +R+GL +F  G               TP        L+ +  Q 
Sbjct: 115 GTNGKSTTTALTGAMLERAGLRTFVGG------------NFGTP--------LAEVVDQT 154

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +E SS      R+  +   A +  N+  DH+D + +  AY +AK   FE + P +
Sbjct: 155 WDVLVLEISS--FQAERVPTLHARAHALLNITDDHLDRYASFAAYADAKGNPFERMTPDD 212

Query: 242 SPAIIYADD 250
              + + D+
Sbjct: 213 VAVVPFGDE 221


>gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 773

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 118/303 (38%), Gaps = 41/303 (13%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           E+G   +  A+ Q       +S  S+ DFS         L+V N  K L     +L   H
Sbjct: 2   ENGEWKMENAMQQDGAQPTPNSRLSILDFSN-------FLIVANPLKALQ----KLAEAH 50

Query: 114 PEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167
            EN    ++ +TG++GK+ V  ++ Q+          + P   I  S  + ++++  P  
Sbjct: 51  RENFKIPVIGITGSNGKTIVKEWLHQL----------LSPDRCIVRSPRSYNSQIGVPLS 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           ++    L+  +  G+    +          R+  IK   G  TN+G  H      Q+ +F
Sbjct: 101 VW---QLNEEAELGIFEAGISEMGEMGALKRM--IKPTIGILTNIGGAH------QENFF 149

Query: 228 NAKMRLFEEL-LPKESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           + + +  E+L L K+   +IY  D    S  V K    A     S     + +++ KV  
Sbjct: 150 SLQEKCMEKLTLFKDCDVVIYNGDNELISNCVAKSMLTAREIAWSCKDIERPLYISKVTK 209

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             +   +       D  F  P   +  + NAL     C+ +   +  + E + +L  +  
Sbjct: 210 KEDHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAM 269

Query: 345 RFE 347
           R E
Sbjct: 270 RLE 272


>gi|30248992|ref|NP_841062.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
 gi|60390554|sp|Q82VS5|MURD_NITEU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30138609|emb|CAD84900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
          Length = 471

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 136/361 (37%), Gaps = 93/361 (25%)

Query: 66  QGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVT 121
           QG +AI +S   ++ +    A ++   P++        + LFA  L  Y      ILA+T
Sbjct: 66  QGIDAIAISPGVAVAEPLVQAALQQGVPVI------GDIELFAVALDQYAPPGTKILAIT 119

Query: 122 GTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           G++GK++V S V ++ + +G     +  IGP +                  L   +  + 
Sbjct: 120 GSNGKTTVTSMVGEMVKNAGWDVEVAGNIGPAA------------------LDALMQRMD 161

Query: 179 SQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +    H+ ++E SS  L+      ++  A +  NL  DH+D + + + Y  AK R+F   
Sbjct: 162 ANKWPHLWALELSSFQLET--TSSLRPDAATVLNLSEDHLDRYDSIEEYAAAKARIF--- 216

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                                R HN GC ++L+      +    K     N +QVT  + 
Sbjct: 217 --------------------SRPHNNGCVQILNRDDARVYAMADK-----NSKQVTFGLS 251

Query: 297 GKDFDFLFPL-PGEFQVYNA-----------------------LVAAGLCIAIGIDSALV 332
               D  F L PG   V+ A                       L A  LC A+ +    +
Sbjct: 252 APVSDEEFGLLPGGSDVWLAQGSTHLLKTSELAVAGLHNAANALAALALCRAVDLPFEPL 311

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           L  L     +P R + V   +  G  + D + ++N    I   +  +   R  V+   GG
Sbjct: 312 LHALRTFRGLPHRMQKVAEFN--GVTFYDDSKSTN----IGSAVAALNGFRKNVILIAGG 365

Query: 393 D 393
           D
Sbjct: 366 D 366


>gi|329964558|ref|ZP_08301612.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
 gi|328524958|gb|EGF52010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 32/268 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +GL+   +G    I S       T     Y+      
Sbjct: 126 MICITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGSSLALQVATEKHDYYI------ 176

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y    Q Y +AK R+ +
Sbjct: 177 ----------IELSSFQLDN--MYKFRANIAVLMNITPDHLDRYDHCMQNYVDAKFRITQ 224

Query: 236 ELLPKESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              P +  A IY +D     +E+ K    A     +   +   I   +   +   + +  
Sbjct: 225 NQTPDD--AFIYWNDDPIIKRELAKHGLKAHLYPFAAVKKDGVIAYVEDGEVEINEPIAF 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++E ++      L G   +YN+L A       GI    + + L     V  R E V T  
Sbjct: 283 NMEQEE----LALRGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVEHRLEKVAT-V 337

Query: 354 RGGRIYVDYAHTS-NSLEMILKNIRTIT 380
           RG +   D   T+ NS    L+++ T T
Sbjct: 338 RGVQFINDSKATNVNSCWYALQSMTTKT 365


>gi|325288637|ref|YP_004264818.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964038|gb|ADY54817.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 453

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 50/332 (15%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + A+ IV S+AY     + +     N PI    +  +FL L  S+  G      + ++GT
Sbjct: 63  ENADMIVASAAYDDHHPEIARAKELNIPIY---SYPQFLGLLMSKKCG------ICISGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  + + +I   SG+  S  +G  S++ S   + R         A   +Y  ++  
Sbjct: 114 HGKTTTTAMIGKILVDSGIDPSIVVG--SSVPSIGGNAR---------AGKGNYFVAE-- 160

Query: 183 THVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              S E   H L+   QH +          TN+  DH DY++       A   L  +L P
Sbjct: 161 ---SCEYRRHFLNYSPQHLV---------VTNIEFDHPDYYKDIHDVIAAFQSLTGKL-P 207

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
                II+ +D    ++  +A      + + G+ +   I  + +   +     ++ +  +
Sbjct: 208 ANGNLIIWQEDPNRTQIQTKA-----PITTYGFSEDADIKAENIVYSNGGSIFSVVINKE 262

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                + P+ G+  + +AL A  L   +GI  + ++  L        RFE +GT + G  
Sbjct: 263 SIGTLMLPVAGKHNILDALAAIALAFRLGIAPSEIIRSLSGFDGTKRRFERLGTKN-GAV 321

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
           I+ DYAH    ++  L  +R      RI  VF
Sbjct: 322 IFDDYAHHPTEIQTTLDGVRLCFPDRRIRAVF 353


>gi|309803741|ref|ZP_07697827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164150|gb|EFO66411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 455

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 37/325 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR   A  +FV +VG + DGH ++  A+A GA A +       Q   A    N
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAAL------WQKDHANRPEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+T   L   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLI 205
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L  I   
Sbjct: 133 TQ--ANF--NNEIGVP--------ITILEMKPTTEILV--LEMGMDRAGQLHHLSEIVCP 178

Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +G  HI++  T+    +AKM + + L  KE    I+  D     +  RA    
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIFNGD--EPLLQARAQKLN 234

Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               + G+     I+     +  +    TI+       F  P+ G+  V NAL A  +  
Sbjct: 235 QLQATFGFNSTDTIYATNFNSYMHHASFTIN--DSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEF 348
             G+    + + L        R ++
Sbjct: 293 TFGVPDVEIAQALANFVPTANRMQW 317


>gi|297544895|ref|YP_003677197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842670|gb|ADH61186.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 19/202 (9%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH++ H+T + Y + K R+FE     E   + + DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLNRHKTFENYRDIKGRIFENQRENEYTVLNF-DDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +     L+    + N   + ISV+       D + ++ +PGE  + NAL A+ +    
Sbjct: 240 SRKN---SLENGAYVKN-GSIYISVDKNAKKIIDIEEIY-IPGEHNLENALAASSVAYLS 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI   ++   L+    V  R EFV     G + Y D   T+   +  +K I+ +    ++
Sbjct: 295 GISVDVIANTLKTFKGVEHRIEFV-DEINGVKFYNDSKGTNP--DASIKAIQALKPPIVL 351

Query: 386 VVFGC--GGDRDQGKRPIMGKI 405
           +  G   G + D+  +   GK+
Sbjct: 352 IAGGYDKGSEFDEFVKAFNGKV 373


>gi|225849192|ref|YP_002729356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643195|gb|ACN98245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 424

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 88/192 (45%), Gaps = 20/192 (10%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D+H+  + Y  +K ++F+    +E   I+  DD   K++  ++      +  +
Sbjct: 152 NISKDHLDWHKKMKHYILSKFKIFKN-QTEEDYLILNYDDNCLKQIKAKSQIYYFSLNQL 210

Query: 271 GYQGKFIHLKK-------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               K I+LK        +  + +K+++ I V+         L G   + N + +  +  
Sbjct: 211 PQDKKGIYLKNIEKSGEYILTLQDKEKIDIKVKT-------SLVGLHNLQNIMASLVVSY 263

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G+D   VL+ +++   +  R EFV ++  G   Y D   T  +++ + K I +     
Sbjct: 264 LYGLDLDKVLKVIQEFKPLSHRIEFV-SSINGVSFYNDSKAT--TVQAVEKAIDSFDKNV 320

Query: 384 IIVVFGC--GGD 393
           ++++ G   GGD
Sbjct: 321 VLILGGINKGGD 332


>gi|167622393|ref|YP_001672687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352415|gb|ABZ75028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 439

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/169 (18%), Positives = 76/169 (44%), Gaps = 27/169 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I++S   + +     +  +  I V+ +   F     +R   +    ++ +TG++GK+
Sbjct: 67  AQQIIISPGIACETPEVRVAFDMGIEVIGDVELF-----AREVSQGSAKVIGITGSNGKT 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +  G  S+ +G    + +    + L  P  +Y+                +
Sbjct: 122 TVTTLVGEMAKACG-CSYAVGGNIGVPAL---DLLLEPKELYI----------------L 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           E SS  L+      ++  A +  N+  DH+D +   ++Y  AK++L+++
Sbjct: 162 ELSSFQLETTH--SLQCTAATCLNISEDHMDRYSDLESYRQAKLKLYKQ 208


>gi|323964816|gb|EGB60283.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           M863]
 gi|327255066|gb|EGE66669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           STEC_7v]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|312140141|ref|YP_004007477.1| UDP-N-acetylmuramate-l-alanine ligase murc [Rhodococcus equi 103S]
 gi|325676978|ref|ZP_08156650.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
 gi|311889480|emb|CBH48797.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Rhodococcus equi 103S]
 gi|325552278|gb|EGD21968.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
          Length = 498

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 127/333 (38%), Gaps = 58/333 (17%)

Query: 84  ATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           A I  + P LV    R        ++ AS + G      L V+GT GK+S  S +    Q
Sbjct: 81  AAIPKDNPELVEAAARGIPVILRPAVLASLMQG---HRTLLVSGTHGKTSTTSMLVVALQ 137

Query: 139 RSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G   SF +G      + A  N       +++A+A              + S   L Q+
Sbjct: 138 HCGFDPSFAVGGEL---NEAGTNAHHGTGDVFVAEA--------------DESDGSLLQY 180

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSK 254
             D + +     TN+  DH+D+  T  AY    +++F++ + + +P    +   DD  S 
Sbjct: 181 DPDVVIV-----TNVEADHLDFFGTSDAY----VQVFDDFVARIAPGGLLVACLDDPGSA 231

Query: 255 EVMKRAHNAG---CRVLSVGYQGKF---------IHLKKVCAIHNKQQVTISVEGKDF-- 300
            + +R   AG    RV+  G              + L    A        I   G+D   
Sbjct: 232 ALARRTIEAGRDDVRVVGYGTADGVAAAGPVPVGVELVSWEARDTGGVAQIRFAGEDAAR 291

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG+    NAL A       G     +LE L     V  RF+F G   RG R++ 
Sbjct: 292 TLRLGVPGKHMALNALAALLAGRGAGASIDELLEGLAGFGGVHRRFQFTG-RERGVRVFD 350

Query: 361 DYAHTSNSLEMILKNIRTITS-----GRIIVVF 388
           DYAH    +  +L     +       GR++VVF
Sbjct: 351 DYAHHPTEVRAVLGAASDLVDDDRQPGRVVVVF 383


>gi|114763025|ref|ZP_01442455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544349|gb|EAU47357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. HTCC2601]
          Length = 477

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 142/354 (40%), Gaps = 48/354 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + N VS D+R I  G +FVA+   + DGH F+ QA+  GA A +VS      D +     
Sbjct: 22  EANGVSIDTRTIAKGDLFVALKAAR-DGHDFVAQALENGASAALVSRIPEGVDPAN---- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +L+VD+ +  L         +    ++AVTG+ GK+S    ++ +          +G
Sbjct: 77  ---LLIVDDVQAGLEALGRAARARTRARVVAVTGSVGKTSTKDMLRVV----------LG 123

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVEASSHGLDQHRLDGIKL 204
             S + +  +        P+ LA+    +       G+ H    A    + +  +  I +
Sbjct: 124 AQSRVHAAEKSYNNHWGVPLTLARMPEDVDFAVIEIGMNHPGEIAPLSDMARPDVAMITI 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +A +       H+   ++ +     K  +FE L P  + A++  D   S  ++       
Sbjct: 184 VAPA-------HLAAFESLEGIAREKAAIFEGLEPGGT-AVVNGDLPVSPLLVAAGEARA 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVYNALVAAG 320
             V++ G      H  +V  +      T+ V+G+ +     F   +PG     N +    
Sbjct: 236 AHVITFGEAEGNHH--RVTHVDIGDSTTV-VQGRAWRSPVLFKVSVPGRHFAVNGMGVLA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMI 372
           +  A+G+D AL +  L          ++     RG R  I +D   T  SLE+I
Sbjct: 293 VAHALGLDRALAVTALG---------QWTAGAGRGQRETILLDPVETHLSLELI 337


>gi|9257128|pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|13096498|pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 147 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 204 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 250

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 251 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 306


>gi|327439195|dbj|BAK15560.1| UDP-N-acetylmuramate-alanine ligase [Solibacillus silvestris
           StLB046]
          Length = 432

 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 118/302 (39%), Gaps = 66/302 (21%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           KFL  +++R         +A+TG  GK+S    +  +      +S+ IG  +   S  +D
Sbjct: 92  KFLGEYSNRY------TSIAITGAHGKTSTTGLMSHVVGGYMPTSYLIGDGT--GSGKED 143

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                 +  ++ +A  Y               H L  H    I       TN+  DH DY
Sbjct: 144 ------ASYFVMEACEY-------------RRHFLAYHPDYAI------MTNIDFDHPDY 178

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             +    ++A    F++L  + + AII   D   +++ K   N     + V Y G F   
Sbjct: 179 FTSIDDVYDA----FQQLALQVNKAIIACGD--DEQLQKIQAN-----VPVVYYG-FDPA 226

Query: 280 KKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               A    + +  + EG +FD          F  PL G+  + N L    LC   G+ +
Sbjct: 227 NDFSA----RNIVKTSEGTEFDVYVRNEFYSKFFIPLFGDHTILNTLAVISLCHYEGVPA 282

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIV 386
            L+ E L     V  RF    T ++ G  I V DYAH    +   L++ R    GR ++ 
Sbjct: 283 KLIQERLNTYGGVKRRF----TETKVGNAILVDDYAHHPTEIAATLQSARQKYPGREVVA 338

Query: 387 VF 388
           VF
Sbjct: 339 VF 340


>gi|297203112|ref|ZP_06920509.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
 gi|197717453|gb|EDY61487.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
          Length = 463

 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 11/215 (5%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQG 274
           H +Y    + Y +     F + + K    ++ AD   ++E+  R   +G RV++ G  + 
Sbjct: 191 HANYASMDEIYES--FETFVDRIAKGGTLVVNADHEGARELTWRVTASGVRVVTYGDAED 248

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
             + +  V     K +VT+ ++G+   F   +PG    +NA+ A    +A+G+ +  +  
Sbjct: 249 ADVRVLSVAPQGLKSEVTVLLDGRQLTFTVSVPGRHYAHNAVAALAAGVALGVPAEDLAP 308

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGC--- 390
            L     V  R +  G  + G ++   YAH    +   L+ +R      RI+VVF     
Sbjct: 309 ALAAYTGVKRRLQLKG-EAAGVQVIDSYAHHPTEMTADLEAMRAAAGDARILVVFQPHLF 367

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              ++ GK   MG+ AL LAD ++V +  P  EDP
Sbjct: 368 SRTQELGKE--MGE-ALALADGSLVLEIYPAREDP 399


>gi|219684279|ref|ZP_03539223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBr]
 gi|219672268|gb|EED29321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBr]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 27/168 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q+ ++    + ++G    IS  +  ++
Sbjct: 102 ISLFL--IFNKNP--IIAVTGTKGKSTLVSLLYQVLKKKYPRA-KLGGNIGISPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGRSPLIL-----------------ELSSWQL--QSLENFNPILSIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
               Y   K ++F   + + S   I  D AY K   K    A   + S
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIAIIQDKAYYKYFSKFESKAKVILFS 242


>gi|319900256|ref|YP_004159984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415287|gb|ADV42398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
          Length = 432

 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 152/370 (41%), Gaps = 48/370 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  +A+ QG+   +V  A            NT  
Sbjct: 16  VTTDSRNCPQGSLFIALKGANFNGNAFAAKALEQGSTYAMVDEA------QYAPAGNTHY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    I+ +TGT+GK++    +  +  +        G +  
Sbjct: 70  ILVDNCLRTLQKLANYHRNQQGTRIIGITGTNGKTTTKELMAAVLSQ--------GHSVL 121

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +    +N +  P  +   KA   L+      + + AS  G  +  ++  +   G  TN+
Sbjct: 122 YTQGNLNNHIGVPLTLLRLKAHHDLAV-----IEMGASHPGDIRELVEITEPDYGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   +       K  L++ L  + +S   I  D+ Y KE+       G  ++  G
Sbjct: 177 GKAHLEGFGSFDGVIKTKGELYDYLRRRGDSTIFIDHDNPYLKEIA-----WGLNMIPYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + +     ++    N   +T       EG+  +    L GE+   N L A  +    G+
Sbjct: 232 TEDELYVNGRITG--NSPYLTFKWKAGKEGERHEVQTQLIGEYNFPNVLAAVTIGRFFGV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR------GGRIYVDYAHTSNSLEMI--LKNIRTI 379
           + A + + L          E+V  N+R         I +  A+ +N   M+  + N R +
Sbjct: 290 EPAKIDKALA---------EYVPQNNRSQLKKTADNILIVDAYNANPTSMMAAISNFRNM 340

Query: 380 TSGRIIVVFG 389
            +   +++ G
Sbjct: 341 QAENKMLILG 350


>gi|260889998|ref|ZP_05901261.1| tetrahydrofolate synthase [Leptotrichia hofstadii F0254]
 gi|260860604|gb|EEX75104.1| tetrahydrofolate synthase [Leptotrichia hofstadii F0254]
          Length = 193

 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F+ PL G+FQ  N L+A  +    GI   ++ + L+++  + GRFE    N       +D
Sbjct: 5   FILPLFGKFQTNNFLIAYEIAKIYGIGDEIIQKGLDEIS-LAGRFEIFSQNPAT---ILD 60

Query: 362 YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRD 395
            AH  +S+ ++++N+  +  +  +I +    G +D
Sbjct: 61  VAHNDDSVRVLVENLNELFKNDEVIFILSILGTKD 95


>gi|325282928|ref|YP_004255469.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
 gi|324314737|gb|ADY25852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   A   FVA+ G ++ G+ FI  A+ +GA        + L D           
Sbjct: 24  LTWDSRQADADTAFVALPGERDHGNRFIEAALERGA-------PFVLTDLPGAASRLPRT 76

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           + V ++   L+ +A +   K+P  ++ VTG+ GK++  S+V
Sbjct: 77  VEVPDSLAALTAWAQQERAKNP-LVVGVTGSVGKTTTKSYV 116


>gi|331671607|ref|ZP_08372405.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
 gi|331071452|gb|EGI42809.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKICVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|299142299|ref|ZP_07035432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
 gi|298576388|gb|EFI48261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 129/323 (39%), Gaps = 59/323 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I           P   Y+      
Sbjct: 104 MVCITGSNGKTTTTSLIYHIFKSAG---YDVGLAGNIGKSLALQVAEDPHEYYV------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFE 235
                     +E SS  L+   +   +       N+  DH+D +  + + Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLNN--MYDFRANIAILLNITPDHLDRYDFKFENYADAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              P++S  I + DD   K+ +++            Y   F  LK+  +I         +
Sbjct: 203 NQTPEDS-FIYWNDDPVIKKELEKFEIK-------AYACPFSELKEKGSIG-------YI 247

Query: 296 EGKDFDFLFPLP-----------GEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVP 343
           E   +   +P P           G+  +YN+L AAGL   I GI   ++ + L     V 
Sbjct: 248 EAGTYKLEYPTPFNMEQEALSLTGKHNIYNSL-AAGLASNIAGIKKEIIRKSLSDFPGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            R E V     GG  Y++ +  +N  +    L++++T T    +++ G G D+     PI
Sbjct: 307 HRLEKVC--KVGGVQYINDSKATNVDACWYALESMKTPT----VLILG-GKDKGNDYTPI 359

Query: 402 MGKIALDLADIAIVTDDNPRSED 424
              +      +  +  DN +  D
Sbjct: 360 KELVKKKCRGLVYLGADNRKLHD 382


>gi|227503057|ref|ZP_03933106.1| tetrahydrofolate synthase [Corynebacterium accolens ATCC 49725]
 gi|227076118|gb|EEI14081.1| tetrahydrofolate synthase [Corynebacterium accolens ATCC 49725]
          Length = 523

 Score = 40.4 bits (93), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 142/367 (38%), Gaps = 69/367 (18%)

Query: 113 HPE---NILAVTGTSGKSSVASFV-------------------QQICQRSGLSSFQIGPT 150
           HPE   +++ + GT+GKSS A  V                   Q++ +R G+    I P 
Sbjct: 105 HPEQSFDVIHIAGTNGKSSTARMVDSLLRSFHRRVGLVTSPHLQRVTERIGIDGRPIHPR 164

Query: 151 STISSFAQ--------DNRLTTP-SPIYLAKALSY--LSSQGVTHVSVEASSHGLDQHRL 199
             +  + +        D R   P S   +   LSY   +   V    VE    GL     
Sbjct: 165 DYVRLWHEIKPYVEMVDARSDVPMSKFEVLVGLSYAAFADAPVDVAVVEVGLGGL----W 220

Query: 200 DGIKLIAGS---FTNLGRDHIDYHQT--------QQAYFNAKMRLFEELLPKESPAIIYA 248
           D   ++       T +G DH DY  +        +      +    + L P E+ AII  
Sbjct: 221 DATNVVNADVSVITPVGLDHTDYLGSDIREIAGEKAGIIKRRADAEDPLTPNENIAIIAE 280

Query: 249 DDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
               + +V ++RA +    V   G   +F  L+   A+   QQV I   G  + D   PL
Sbjct: 281 QVPEAMQVILQRAVDMDAGVARSG--AEFAALESRIAV-GGQQVNIQGLGGMYEDIFLPL 337

Query: 307 PGEFQVYNALVAA-------GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            GE Q  NA VA        G      +D A V     K  + PGR E V T+      +
Sbjct: 338 HGEHQAKNAAVALAAVEAFFGAASGHPLDIASVRNGFAKT-ISPGRLERVRTSP---TTF 393

Query: 360 VDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVTD 417
           +D AH  +  + +   + R     R+I V     D+D QG   I+  +   L+++ I  +
Sbjct: 394 IDAAHNPHGAKALGAALDRDFDFARLIGVVSIFADKDAQG---ILAALEPYLSEVVISQN 450

Query: 418 DNPRSED 424
            +PR+ D
Sbjct: 451 SSPRALD 457


>gi|183221142|ref|YP_001839138.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911233|ref|YP_001962788.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775909|gb|ABZ94210.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779564|gb|ABZ97862.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase); putative
           signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 469

 Score = 40.4 bits (93), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 165/437 (37%), Gaps = 72/437 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V SSA + +      R     + + +  +F+ L  S       +  ++V G+ GK
Sbjct: 61  GIQMVVYSSAINDKHKDVFNRIQNLNIPLKHRSEFMHLLVSN------QKSISVAGSHGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  + V QI    GL      PT  I     D  L       L K    +         
Sbjct: 115 TSTTTMVSQILTEVGLD-----PTIMIGG---DTSL-------LQKRGGKMGKGDYAVYE 159

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-- 244
            + S     +H+ + I+L+    TN+  DH+DY++T++    A    F + +   SP   
Sbjct: 160 SDESDGTFLRHKAN-IRLL----TNIDNDHLDYYRTRERLEEA----FLDYMGFGSPGEV 210

Query: 245 IIYADDAYSKEVMK------RAHNAGCRVLSVG-----------YQGKFIHLKKVCAIHN 287
           +++  D   K V++        HN     L V            +  +F     V     
Sbjct: 211 VLFVGDPGIKSVLEIHYRNLTFHNELHLNLLVTKSHTNEEWFSYFLSQFQKQITVVLYEV 270

Query: 288 KQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           K+ Q+   +E + +    P PG   + N LVA      IGI  +   + L +   V  R 
Sbjct: 271 KENQLYFQLENQSYTLELPYPGVHYLTNGLVALTCAYRIGISPSQSSQILSRYIGVKRRQ 330

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           E +G  +    I  DY H    ++M+++++  +    G++ V+F       Q  R    K
Sbjct: 331 EILGVWNEVTVI-DDYGHHPTEIKMVIQSLKDKIKNKGKLHVIF-------QPHRYTRTK 382

Query: 405 IAL-DLADIAIVTD-----------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           + L DLA   +  D           +NP            + G    +  GN  E +   
Sbjct: 383 LLLEDLAKSLLGADFVFLLPIYSAGENPMEGITSNRFLPYLTGSQTTMLDGNIREDLEQI 442

Query: 453 IEMLNKQDVLVVAGKGH 469
              LNK D+L+  G G+
Sbjct: 443 KSHLNKGDLLLCLGAGN 459


>gi|16126785|ref|NP_421349.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter crescentus
           CB15]
 gi|221235565|ref|YP_002518002.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter crescentus
           NA1000]
 gi|23821884|sp|Q9A5A6|MURC_CAUCR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765989|sp|B8H086|MURC_CAUCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13424109|gb|AAK24517.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter crescentus CB15]
 gi|220964738|gb|ACL96094.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter crescentus
           NA1000]
          Length = 473

 Score = 40.4 bits (93), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 296 EGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           E   +D L  P+ G   V NA  A  +   +G+D+  + + L     V  RF   G  + 
Sbjct: 275 EAVRYDGLKMPMAGHHNVLNATAAVAVARELGVDAEAIAKGLAGFGGVKRRFTTTGV-AN 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387
           G R+  DY H    +  +LK  R +T +G++I V
Sbjct: 334 GIRVVDDYGHHPVEIAAVLKAARAVTPNGKVIAV 367


>gi|300905497|ref|ZP_07123261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300919643|ref|ZP_07136134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|301303812|ref|ZP_07209932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|300402647|gb|EFJ86185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300413283|gb|EFJ96593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|300840939|gb|EFK68699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|315253162|gb|EFU33130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 85-1]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|290956552|ref|YP_003487734.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
 gi|260646078|emb|CBG69171.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
          Length = 461

 Score = 40.4 bits (93), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 9/213 (4%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQG 274
           H +Y    + Y  A    F   +      +I AD   ++E+  R   +G RV++ G  + 
Sbjct: 191 HANYASMDEIY--ASFETFAGRIVPGGTLVISADHEGARELTSRL--SGVRVVTYGERED 246

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
             + +  V A   K +VT+ ++G++  F   +PG    +NA+ A    +A+G+ +A +  
Sbjct: 247 ADVRVLSVVAQGLKSEVTVLLDGQEITFAVSVPGRHYAHNAVAALAAGVALGVPAAELAP 306

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG-G 392
            L     V  R +  G  +RG ++   YAH    +   L+ +R+     RI+VVF     
Sbjct: 307 ALAAYTGVKRRLQLKG-EARGVQVIDSYAHHPTEMTADLEAMRSAAGDARILVVFQPHLF 365

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            R Q     MG+ +L LAD ++V D  P  EDP
Sbjct: 366 SRTQELGTEMGQ-SLALADASVVLDIYPAREDP 397


>gi|149182972|ref|ZP_01861428.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. SG-1]
 gi|148849309|gb|EDL63503.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. SG-1]
          Length = 876

 Score = 40.4 bits (93), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 32/74 (43%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R  F  T  +G  I +DYAH    L+ I   +  I   R I V    GDR       M +
Sbjct: 723 RGRFNRTRVQGKEIIIDYAHNQAGLKAIYDAVEHIERNRTITVISAAGDRQDSAIRQMAR 782

Query: 405 IALDLADIAIVTDD 418
           IA   +D  I+ +D
Sbjct: 783 IASANSDHLIIKED 796


>gi|262044868|ref|ZP_06017911.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037837|gb|EEW39065.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IIAITGSNGKSTVTTLVGEMAKAAGIN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDTDRELYV-LELSSFQLETT--SSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAKTCVVNADDALTMPV----RGADERCISFGVDVGDYHLNR 242


>gi|254500899|ref|ZP_05113050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Labrenzia
           alexandrii DFL-11]
 gi|222436970|gb|EEE43649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Labrenzia
           alexandrii DFL-11]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 30/183 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + +  GL   Q+G             + TP        L   
Sbjct: 117 IAITGTNGKSTTTALIAHLLRELGL-DVQMG-----------GNIGTP-------VLELE 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   H  VE SS+ +D      +    G   NL  DH+D H T + Y   K    E L
Sbjct: 158 PPRPGRHYVVECSSYQIDLAPT--LDPTVGLHMNLSPDHLDRHGTLENYAAIK----ERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVT 292
           +     AI+  DD  S  +  R   A    CR+        G + H  ++   H+  Q  
Sbjct: 212 VAGAKVAIVGVDDGLSSMIADRLELARKPVCRIAGERELTAGIYAHNGRLIEAHDGAQTE 271

Query: 293 ISV 295
           +++
Sbjct: 272 VAL 274


>gi|198282527|ref|YP_002218848.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666253|ref|YP_002424717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247048|gb|ACH82641.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518466|gb|ACK79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 448

 Score = 40.4 bits (93), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 33/157 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +GL +            A    L TP       AL  
Sbjct: 108 IVAITGSNGKSTVTTLVGEMARAAGLRA------------AVGGNLGTP-------ALDL 148

Query: 177 LSSQGVTH--VSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           L   G       +E SS  L    D H        A +  NL  DH+D+H    AY  AK
Sbjct: 149 LPETGPEPDLYVLELSSFQLAACHDFHPR------AAAILNLSPDHLDWHGDYAAYAAAK 202

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            R+F  +   ++  ++ A D ++  +  +   AG RV
Sbjct: 203 TRIFRAMGAGDT-LVLNAGDTFTAALPPQV-PAGVRV 237


>gi|121998872|ref|YP_001003659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
 gi|121590277|gb|ABM62857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
          Length = 447

 Score = 40.4 bits (93), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 35/184 (19%)

Query: 67  GAEAIVVSSAYSLQDFSAT-IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           GAE +VVS    L+    T +R+    +V +     L+LFA  + G     + AVTG++G
Sbjct: 70  GAERVVVSPGLDLRHGVWTELRAAGRSVVGE-----LTLFAEAVAGP----VCAVTGSNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V S + ++ + +G               A    L TP       AL  L        
Sbjct: 121 KSTVVSLLGEMARAAGW------------DVAVGGNLGTP-------ALELLEQAPADGY 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----ELLPKE 241
            +E SS  L+     G +    +  N+  DH+D + +   Y  AK R+ +     +L  E
Sbjct: 162 LIEVSSFQLEA--CPGFRADVAALLNVSADHMDRYDSLDDYAAAKARVLDGARVAVLNAE 219

Query: 242 SPAI 245
            P I
Sbjct: 220 DPQI 223


>gi|117924065|ref|YP_864682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
 gi|117607821|gb|ABK43276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 26/168 (15%)

Query: 109 LYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           L  +H E    + +TGT+GKS+V + V       GL   ++  T+       D  L+   
Sbjct: 98  LLFRHSEQAAFVGITGTNGKSTVTTLV-------GLMLARLPGTTRTGGNLGDAALS--- 147

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            ++ A    Y+         +E SS  L+   ++G      +  NL  DH+D +   Q Y
Sbjct: 148 -LWQADVERYV---------LELSSFQLES--IEGFHPEVAALLNLSDDHLDRYNGLQGY 195

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVLSVGYQ 273
             AK R+F+    ++  A+I ADD   + V     H +  RV+    Q
Sbjct: 196 LRAKARIFQRQTQRDR-AVINADDPALQPVRDILGHPSAPRVVPFSTQ 242


>gi|219685169|ref|ZP_03539989.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           garinii Far04]
 gi|219673265|gb|EED30284.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           garinii Far04]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 27/168 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q+ ++    + ++G    +S  +  ++
Sbjct: 102 ISLFL--IFNKNP--IIAVTGTKGKSTLVSLLYQVLKKKYPKA-KLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGRSPLIL-----------------ELSSWQL--QSLENFNPILSIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
               Y   K ++F   + + S   I  D AY K   K    A   + S
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIAIIQDKAYYKYFSKFESKAKVILFS 242


>gi|210634199|ref|ZP_03298039.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
 gi|210158889|gb|EEA89860.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
          Length = 474

 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 111/291 (38%), Gaps = 49/291 (16%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPI 168
           YG+     +A  GT GK++ +S V  +  R GL  SF IG    +  +  + +       
Sbjct: 115 YGR---TTVAAAGTHGKTTTSSMVATMLDRMGLDPSFLIG--GVVEGYGTNGK------- 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                    +  G   V VEA         L+   +I    TN+  DH+D++ + +    
Sbjct: 163 ---------NGDGEYFV-VEADESDSSFLYLNPHVVI---VTNVEADHMDHYSSLEE-IE 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                F  L+ ++   I+  +D +  E+   A + G  VL+ G +G+   +   CA    
Sbjct: 209 DTFCAFMNLVGEDGTVIVCGEDPHLVEL---ARSTGRAVLTYG-EGEGFDVS--CA---- 258

Query: 289 QQVTISVEGKDFDFLFP-----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              +    G DF    P            PG   + NA  A      +G+D+      L 
Sbjct: 259 PMASSHTFGTDFSVTLPDGAVRTVAIKNNPGRHNMLNATAALASAYVLGLDTEDAARALS 318

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                  RF  VG  +RG  +  DY H    ++  L   +++   ++ VVF
Sbjct: 319 TFEGARRRFTHVG-ETRGVMLVDDYGHHPTEVKATLHAAKSLDFAKVAVVF 368


>gi|254291802|ref|ZP_04962587.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
 gi|150422314|gb|EDN14276.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
          Length = 506

 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 114/282 (40%), Gaps = 40/282 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 145 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 201

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F NL +  ID+             
Sbjct: 202 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHN---------- 243

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q 
Sbjct: 244 -----LPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQF 295

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +GK + +    +PG     NA  A  +     I    +L  +        RF+ +G
Sbjct: 296 TVVRKGKANLNITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLG 355

Query: 351 TNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               G  + +   DY H    +++ +K  R      R++++F
Sbjct: 356 EFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 397


>gi|138896357|ref|YP_001126810.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|166224692|sp|A4IRW1|MURC_GEOTN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134267870|gb|ABO68065.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 434

 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 101/300 (33%), Gaps = 67/300 (22%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +FL   AS+         +AVTG+ GK++    +  + Q +  +S+ IG   T       
Sbjct: 92  RFLGELASKF------TSIAVTGSHGKTTTTGLLAHVMQGAHPTSYLIG-DGTGKGEPGS 144

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                 +  Y    LSY     +                           TN+  DH DY
Sbjct: 145 KYFVFEACEYRRHFLSYFPDYAI--------------------------ITNIDFDHPDY 178

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
                  F+A    F+++  +    I+   DD Y + +  +          +G +  F  
Sbjct: 179 FANIDDVFSA----FQQMAQQVKKGIVACGDDPYLQNIQAKV---PILFYGLGEENDF-- 229

Query: 279 LKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGID 328
                     + +  + EG  FD          F  P  G   V NAL    LC   GID
Sbjct: 230 --------QARNIVKTTEGTAFDVFVRNTFFASFTIPRFGTHNVLNALAVIALCHYEGID 281

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +  +   L+    V  RF    T    GR  +  DYAH    +   L+  R    GR +V
Sbjct: 282 AGTIAARLQTFQGVKRRF----TEKTVGRQVLIDDYAHHPREIMATLEAARQKYPGREVV 337


>gi|104779893|ref|YP_606391.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Pseudomonas entomophila
           L48]
 gi|95108880|emb|CAK13576.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas entomophila L48]
          Length = 449

 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 107/274 (39%), Gaps = 46/274 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++ +S +  + + +G+S  F IG      +F+   RL   +P ++ +A  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIG--GVPQNFSVSARLGG-TPFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    I        NL  DH D      A    +     
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTAI------LNNLEFDHADIF-PDLASIERQFHHLV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +P E   I       +++ ++R    GC   V + G  G++            Q   +
Sbjct: 209 RTIPSEGLVI----HPTTEQALERVIGMGCWTPVQTTGEGGQW------------QARLL 252

Query: 294 SVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           S +G  F+ LF           L G+  V NAL        +G+  A+ +E L     V 
Sbjct: 253 SPDGSRFEVLFEGEAQGVVDWALTGQHNVANALATLAAARHVGVAPAMGIEGLSAFKSVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            R E V    +G  IY D+AH   ++   L  +R
Sbjct: 313 RRMEKV-AEVQGVTIYDDFAHHPTAIATTLDGLR 345


>gi|315639620|ref|ZP_07894760.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
 gi|315484581|gb|EFU75037.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 13/161 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   HIDYH ++  Y  AK R+ + +  K+   I +       E+ + A +    V+ 
Sbjct: 191 TNIYEAHIDYHGSRPEYVQAKWRIQKNMTDKDYLVINWN----QTELRELAKSTKATVVP 246

Query: 270 VGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              +G+     ++   +  K Q+ +SV+         +PG+  V NAL A  +     + 
Sbjct: 247 FSTEGQVDGAYEIDGQLFFKGQLIMSVDE------LGVPGQHNVENALAAIAVASLKQVR 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              +   L +   VP R ++VGT+  G   + + +  +NSL
Sbjct: 301 PEAIKAALSQFTGVPHRTQYVGTH--GDVRFFNDSKATNSL 339


>gi|254450940|ref|ZP_05064377.1| mur ligase family protein [Octadecabacter antarcticus 238]
 gi|198265346|gb|EDY89616.1| mur ligase family protein [Octadecabacter antarcticus 238]
          Length = 556

 Score = 40.4 bits (93), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 39/300 (13%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-----SSFAQDNRLTTPSPIYLAKAL 174
           VTGT+GKS+       I   +G     +G +++           +   + P+   LA   
Sbjct: 162 VTGTNGKSTTVRLTAAIGAAAGKC---VGMSTSDWVRVGGEILDEGDYSGPAGARLA--- 215

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--AYFNAKMR 232
             L    V    +E +  GL +  L      A   TN+  DH+  +      A  +AK +
Sbjct: 216 --LRDPRVDLAIIETARGGLMRRGLPVPTADACLLTNVAADHLGTYGIMDVTALADAKFQ 273

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK------FIHLKKVCAIH 286
           L + + P     I+ ADD    E++KRA      +   G +        +I      A  
Sbjct: 274 LSDAIRPG-GLLILNADD---PELVKRAAQFSGDITWFGLEFDRAILDIWIMGGGRVAFV 329

Query: 287 NKQQVTISVEG------KDFDFLFPLPG--EFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              Q+ ++  G         DF+  L G  +F VYNAL A  L  A+ +    + + L  
Sbjct: 330 EDGQMVLARNGIVEPVLAVADFVPALGGAAKFNVYNALGAICLADALELPINAMAKGLAG 389

Query: 339 LHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
               P    GR  +V     G  + +D+AH  + +  +   I++I + R +V+ G  GDR
Sbjct: 390 FTDTPDENPGRGNYVKVG--GLNLLIDFAHNPHGVHALSSAIKSIPAKRRLVIAGQAGDR 447


>gi|170768370|ref|ZP_02902823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
 gi|170122474|gb|EDS91405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L ++   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDAECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R+++         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRTAKLRIYD----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|170681706|ref|YP_001742210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SMS-3-5]
 gi|218698511|ref|YP_002406140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI39]
 gi|218703348|ref|YP_002410867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UMN026]
 gi|293403160|ref|ZP_06647257.1| murD [Escherichia coli FVEC1412]
 gi|298378690|ref|ZP_06988574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300900881|ref|ZP_07119018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300938483|ref|ZP_07153223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331661462|ref|ZP_08362386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331681473|ref|ZP_08382110.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
 gi|170519424|gb|ACB17602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           SMS-3-5]
 gi|218368497|emb|CAR16232.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI39]
 gi|218430445|emb|CAR11311.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           UMN026]
 gi|291430075|gb|EFF03089.1| murD [Escherichia coli FVEC1412]
 gi|298281024|gb|EFI22525.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300355645|gb|EFJ71515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300456552|gb|EFK20045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331061377|gb|EGI33340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331081694|gb|EGI52855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKICVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|72161515|ref|YP_289172.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
 gi|109892752|sp|Q47QW8|MURC_THEFY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71915247|gb|AAZ55149.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
          Length = 472

 Score = 40.4 bits (93), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 124/344 (36%), Gaps = 67/344 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVSSA         IR   P LV    R  + L   A+          +AV GT G
Sbjct: 75  ADTVVVSSA---------IRDTNPELVEARARNLRILPRAAALGALLLGRCGVAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  + Q  G +  + IG     +    D                     G   
Sbjct: 126 KTTTTSMITVVLQHLGAMPGYVIGGQLVTTGLGAD--------------------AGADD 165

Query: 185 VSVEASSHGLDQHRLDGIKLI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           + V      ++    DG  L+        TN+  DH+D +   +   +     F   + +
Sbjct: 166 IIV------VEADESDGSFLMLSPRVAVITNVEADHLDNYGDLEEIHDK----FAAFIGR 215

Query: 241 ESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTI 293
            S  ++   DD  ++ V + A   G +VL+ G      Y+ + I +     +      T 
Sbjct: 216 VSETVVVGVDDPGARRVAEVARQRGLKVLTYGEADTADYRVRDITVDGFTTMFTIDPPT- 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G       PLPG     NA  A  +   IG D  + +E L +      RFEF G  +
Sbjct: 275 ---GDPVHCTLPLPGRHNTLNAAAAVAVADTIGYDPEVAVEGLAEFAGAARRFEFKG-EA 330

Query: 354 RGGRIYVDYAHTSNSLEMIL---------KNIRTITSGRIIVVF 388
            G  +Y  YAH    +   L         +  +   +GRI+V+F
Sbjct: 331 NGVSVYDSYAHHPTEIAADLDAARAALDSQAAKGGKAGRIVVLF 374


>gi|301026104|ref|ZP_07189579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
 gi|300395675|gb|EFJ79213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKICVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|162455697|ref|YP_001618064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161166279|emb|CAN97584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 490

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I  G  FVA+ G   DGH F+  A  +GA A +VS   +L      +  N  +
Sbjct: 35  VSTDSRTIAPGAAFVALAGESFDGHRFLDAAAQRGAAAFIVSREVALPPGGGAVLVNDGL 94

Query: 93  LVVDN-TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             +    R     + +  +   P  I+A+ G++GK++    +  +    G
Sbjct: 95  TALGALARAHRERWRAGAHPGGPRAIVAIGGSAGKTTTTRTIAALLAAVG 144


>gi|53804641|ref|YP_113756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
 gi|53758402|gb|AAU92693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
          Length = 449

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 135/346 (39%), Gaps = 34/346 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E   + VS+D+R I+ G +F A+ G++ D H FI         A  V    +       I
Sbjct: 20  ETSFDGVSTDTRAIRPGSLFFALRGDRFDAHDFI---------ADAVGGGAAALVVERRI 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  P ++V + R+ L   A+    +    ++AV G++GK++V   +  I          
Sbjct: 71  DTPLPQIIVPDGRRALGAAAAAWRAQFDVPLIAVAGSNGKTTVTQMIAAILA-------- 122

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYL-----SSQGVTHVSVEASSHGLDQHRLDG 201
                  ++F ++ RL T   +     L  +     +   +  + +  +  G   +  + 
Sbjct: 123 -------AAFGEERRLATRGNLNNDVGLPLMLFELKAGHRIAVLELGMNHPGEIAYLANL 175

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +      TN  R+H ++  + +A  +    +    LP +  A+  ADD  +    K A 
Sbjct: 176 ARPTVALVTNAQREHQEFMASVEATAHENGSVIAA-LPTDGTAVFPADDPCAGIWRKLAG 234

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               RV+    +G               +V+I+     +    PL GE  V+NAL A   
Sbjct: 235 TR--RVIDFARRGTATVSGTFRTSAGFAEVSITTPAGCWQANLPLAGEHNVHNALAATAA 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +A G+    +   LE    V GR   V   +R G   +D  + +N
Sbjct: 293 ALAAGVPPEAIRRGLESFRPVAGR--GVQLRTRTGARLIDDTYNAN 336


>gi|332881748|ref|ZP_08449396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332680387|gb|EGJ53336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 109/262 (41%), Gaps = 49/262 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I +++G   + +G    I                 + AL  
Sbjct: 105 MICITGSNGKTTTTSLIYHIFKKAG---YNVGLAGNIGQ---------------SLALQ- 145

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           ++ +   +  +E SS  LD   +   +       N+  DH+D Y    Q Y +AKMR+ +
Sbjct: 146 VAEKDYDYYVIELSSFQLDN--MYRFRANIAVLLNITPDHLDRYDHCMQNYVDAKMRILQ 203

Query: 236 ELLPKESPAIIYADD--AYSKEVMK---RAHNAGCRVLS----VGYQGKFIHLKKVCAIH 286
               +E+ A +Y +D     KE+ K   +A      +L     +GY     ++ +     
Sbjct: 204 N--QEETDAFVYWNDDPIIRKELEKYQIKAKKCPFSILKKEGMIGYLADGQYVIEYPTPF 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N +Q ++++ GK             +YN+L A       G+ + ++ + L     V  R 
Sbjct: 262 NMEQESLALTGK-----------HNMYNSLAAGITADIAGVKNEVIRQSLGDFEGVEHRL 310

Query: 347 EFVGTNSRGGRIYVDYAHTSNS 368
           E V    RG    VDY + S +
Sbjct: 311 EKV-VRVRG----VDYINDSKA 327


>gi|153002099|ref|YP_001367780.1| UDP-N-acetylmuramate [Shewanella baltica OS185]
 gi|151366717|gb|ABS09717.1| UDP-N-acetylmuramate [Shewanella baltica OS185]
          Length = 463

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 118/291 (40%), Gaps = 47/291 (16%)

Query: 114 PEN-ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           PE  +LAV+GT GK+S +S +  I    G    F IG      +F    RL   +  ++ 
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIG--GVPQNFGVSARLGK-TAFFVV 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ---TQQAYFN 228
           +A  Y S+        +  S  +  H    +        NL  DH D        Q  FN
Sbjct: 161 EADEYDSA------FFDKRSKFVHYHPRTLV------INNLEFDHADIFADLAAIQKQFN 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV---------LSVGYQGKFIHL 279
             +R     +P E   I++  D+++   +K+  + GC            + G+ GK   L
Sbjct: 209 HLVRT----VPGEG-KIVWPADSHA---VKQTIDMGCWSEQETYHLAESTSGWYGK--AL 258

Query: 280 KKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              C      +  +  +G+    L + L G+  + NA++A      +G+  +  +E L K
Sbjct: 259 SDDC-----HRFEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAK 313

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                 R E +GT   G  +Y D+AH   ++   LK +R  +   +I VV 
Sbjct: 314 FMPPKRRLELLGT-VNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVL 363


>gi|255326226|ref|ZP_05367312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296680|gb|EET76011.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 528

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 20/118 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT+GK++    V  + + +G  S Q+G                  PI  A A    
Sbjct: 161 LCLTGTNGKTTTVGMVDSVLKAAGKKSIQVGNVGM--------------PIVYAIA---- 202

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +     +VE SS  L  H    +   A    N+  DH+D+H + + Y   K R++E
Sbjct: 203 DDEPYEFFAVELSSFQL--HWTHSMSPYASVVLNIAEDHVDWHGSFERYKADKARVYE 258


>gi|312871545|ref|ZP_07731638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|311092940|gb|EFQ51291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 37/325 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR   A  +FV +VG + DGH ++  A+A GA A +       Q   A    N
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAAL------WQKDHANRPEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+T   L   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLI 205
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L  I   
Sbjct: 133 TQ--ANF--NNEIGVP--------ITILEMKPTTEILV--LEMGMDRAGQLHHLSEIVCP 178

Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +G  HI++  T+    +AKM + + L  KE    I+  D     +  RA    
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIFNGD--EPLLQARAQKLN 234

Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               + G+     I+     +  +    TI+       F  P+ G+  V NAL A  +  
Sbjct: 235 QLQATFGFNSTDTIYATNFNSYMHHASFTIN--DSKVKFTIPMIGKHNVSNALAAILVGR 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEF 348
             G+    + + L        R ++
Sbjct: 293 TFGVPDVEIAQALANFVPTANRMQW 317


>gi|309812642|ref|ZP_07706386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
 gi|308433337|gb|EFP57225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
          Length = 501

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 26/153 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT+GK++  + ++ + +  GL +   G                  P+  A     L
Sbjct: 142 LTITGTNGKTTAVTMLESMLKAQGLRAVAAGNVGM--------------PLLEA----VL 183

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q    ++VE SS  L   R   +   A    N+  DHID+H + + Y   K R++E  
Sbjct: 184 HPQPYDVIAVELSSFQLHWSRT--VSPYASCCLNVAPDHIDWHGSYEEYKRQKGRVYE-- 239

Query: 238 LPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVL 268
             +   A +Y  DD  ++ +++ A    GCR +
Sbjct: 240 --RTQVACVYNVDDPATEAMVEDAEVVDGCRAI 270


>gi|297626714|ref|YP_003688477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922479|emb|CBL57052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 510

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 38/245 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+  +  G +FV + G   DG    PQA   GA A +V       D +A +    P L+V
Sbjct: 53  DTHQVTPGALFVGLPGEHVDGADLAPQAAGAGAAAALVG-----HDVTAGL----PRLIV 103

Query: 96  DNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++  + LS  A+ +        L   A+TG+SGK+S    + Q+ + +       GPT +
Sbjct: 104 EDAGRGLSALATGVVATELARGLITFAITGSSGKTSTKDLLAQVLEAT-------GPTVS 156

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA------ 206
            +    +N +  P           LS+ GV   +    S    + + D   L        
Sbjct: 157 PAGN-HNNEIGVP-----------LSACGVDATTRYLVSEMGSRGKGDVATLCRIVPPRI 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +  N+G  H+    +Q A   AK  + E  LP +  A++ ADD     +  R +    R
Sbjct: 205 STVLNVGTAHLGEFGSQDAIAEAKGEIVEA-LPADGWAVLNADDPRVAAMAPRTNAHIAR 263

Query: 267 VLSVG 271
             + G
Sbjct: 264 WTTTG 268


>gi|269118800|ref|YP_003306977.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
 gi|268612678|gb|ACZ07046.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
          Length = 448

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 10/181 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVL 268
           TN+  DH++ H +   Y N K + FEE + K S  ++   D +  E+ K    N      
Sbjct: 179 TNVEADHLENHGS---YENIK-KSFEEFIDKTSDIVVLNKDCH--EIKKLNLKNKNIIWY 232

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S+  +   I+   +   + +    +   G+    F   +PGE  + N+L    L      
Sbjct: 233 SINDESADIYAANIEYKNRESHYEVVKNGESLGKFRLSIPGEHNISNSLGVIYLAHEFLC 292

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D   V E+L        R++ +   S   +I  DYAH    +   +   + I +G+I VV
Sbjct: 293 DMDKVKEYLYNFRGANRRYQILYDKSI--KIIDDYAHHPTEITATINAAKKIETGKITVV 350

Query: 388 F 388
           F
Sbjct: 351 F 351


>gi|196019058|ref|XP_002118918.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
 gi|190577726|gb|EDV18596.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
          Length = 456

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 28/125 (22%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSF---QIG-PTSTISSFAQDNRLTTPSPIYLA 171
           N + +TGT+GKS+  S +  I Q +   S     IG P   + +F   N           
Sbjct: 114 NYIGITGTNGKSTTTSLINHILQSNNYKSALGGNIGIPVLNLPNFNNSNE---------- 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                       H  +E SS+ LD   +   K    +  ++  DH+D + + + Y NAK+
Sbjct: 164 ------------HYILELSSYQLD--LMLNYKFNIAALLSITPDHLDRYASFEDYKNAKL 209

Query: 232 RLFEE 236
           R+F  
Sbjct: 210 RIFNN 214


>gi|323970760|gb|EGB66014.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TA007]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPHASSLKALTTFTGLPHRFEVV 307


>gi|218289897|ref|ZP_03494087.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240037|gb|EED07223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 458

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 136/359 (37%), Gaps = 55/359 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I A+TG++GK++  + V ++ + SG      G   T      D     P  + + +  S+
Sbjct: 119 IYAITGSNGKTTTTTLVGEMLKASGYHPIVAGNIGTPVCDVVDQ----PGDLLVLEVSSF 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                                +L+G         +  N    H+DYH T +AY  AK +L
Sbjct: 175 ---------------------QLEGTHTFHPRGAALLNFYPAHLDYHGTYEAYQQAKWKL 213

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F    P +  AI+  D A    V  RA     RV     +G     + V  I       +
Sbjct: 214 FANQTPDDV-AILNWDQAL---VRDRAGELAARVRGFSLEGAPFD-EGVGVIDG---ALV 265

Query: 294 SVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +V G +   + P     LPG   + NA  AA L +A G     V   L     V  R EF
Sbjct: 266 AVRGGERTPILPVDQVALPGRHNLQNAAAAAALALAAGAHVEAVARVLATFQGVEHRLEF 325

Query: 349 VGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           V     G R Y D   T+ ++    LK+       R +V    G DR     P++  I+ 
Sbjct: 326 V-REVAGVRYYNDSKATNPDAARQALKSFE-----RDVVWIAGGLDRGISFDPLLPDISG 379

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +    ++       E  EK+R  +   G+   +      EA+R A  +    DV++++
Sbjct: 380 RVRAAVLL------GETKEKLREVLARAGVSTCVFASTMEEAVREASRIAEPGDVVLLS 432


>gi|226321051|ref|ZP_03796594.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 29805]
 gi|226233575|gb|EEH32313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 29805]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 27/168 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IVAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
               Y   K ++F   + + S  +I  D AY K   K    A   + S
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYCKYFSKFKSKARVILFS 242


>gi|119773496|ref|YP_926236.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella amazonensis
           SB2B]
 gi|166224726|sp|A1S2G0|MURC_SHEAM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119765996|gb|ABL98566.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella amazonensis
           SB2B]
          Length = 484

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 109/276 (39%), Gaps = 51/276 (18%)

Query: 118 LAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  S +  I  Q     +F IG    ++S   + RL + S   +A+A   
Sbjct: 123 VAVAGTHGKTTTTSLIASIYGQAERDPTFVIG--GLLNSAGTNARLGS-SRYLIAEADES 179

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH+D +        +   
Sbjct: 180 DASFLHLQPMVTV-----------------------VTNIEADHMDTYGGDFEKLKSTFV 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------KFIHLKKVCAI 285
            F   LP    A++  DD   +E++ R    G +V++ G+          F+     C  
Sbjct: 217 DFMHNLPFYGVAVVCVDDPVVRELIPR---IGRQVVTYGFSDDADVQALNFVQEGHSC-- 271

Query: 286 HNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               + T+  +GK D      LPG+  V N+L A  +     I+   +++ L +   +  
Sbjct: 272 ----RFTVRRKGKDDLSLKVNLPGQHNVLNSLAAIAVATEDDIEDEAIVKALAEFQGIGR 327

Query: 345 RFEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR 377
           RF+ +G   +  G + +  DY H  + +   +K  R
Sbjct: 328 RFQHLGKFATPNGEVMLVDDYGHHPSEVLATIKAAR 363


>gi|332531947|ref|ZP_08407831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038574|gb|EGI75017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 444

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 34/167 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+V +   ++ + +G   +++     I +   D  L     +Y+      
Sbjct: 113 VVAVTGSNGKSTVVTLAYEVLKEAG---YKVALGGNIGTAVLD-LLNDDFDVYV------ 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE- 235
                     +E SS  LD      +K ++ +  N+  DH+D + + QAY ++K+ +++ 
Sbjct: 163 ----------LELSSFQLDTTT--SLKPVSATVLNVSEDHLDRYDSYQAYIDSKLSIYDG 210

Query: 236 -ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
            EL+      ++ ADD  +  V +        ++S G Q    HL +
Sbjct: 211 AELI------VVNADDIQTHPVERGT----TPLISFGAQQGDYHLAQ 247


>gi|329122143|ref|ZP_08250751.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
 gi|327466950|gb|EGF12466.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
          Length = 463

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 96/244 (39%), Gaps = 39/244 (15%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D++ T +   NA ++   +        I+  D+   K ++ +          
Sbjct: 180 TNIEDDHLDHYLTVENIKNAFIKFINQTDKINGNTILCIDNEGVKSILPKLDENSYITYG 239

Query: 260 -AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            + NA  + ++  Y   ++       +++K+    +V          +PG   V NAL A
Sbjct: 240 TSDNAEYKAINKRYIDSYMMFD----VYHKESFLGTVS-------LMIPGTHNVRNALAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  GID   +++ L + + V  RF+     S   +I  DYAH    +   LK  + 
Sbjct: 289 LVTGLICGIDFKTIVKSLMEFNGVKRRFQI--KYSGEVKIVDDYAHHPTEIMSTLKAAKE 346

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
               R+I    C     +  R  + K     A D ADI  +TD     E P       I+
Sbjct: 347 CGKHRVI----CAFQPHRYSRTNLLKYEFANAFDNADIIFITDIYSAGEKP-------IN 395

Query: 435 GIPG 438
           GI G
Sbjct: 396 GISG 399


>gi|325298740|ref|YP_004258657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
          diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
          salanitronis DSM 18170]
 gi|324318293|gb|ADY36184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
          diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
          salanitronis DSM 18170]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
          V++DSRH   G +F+A+ G   +G+ F  QA+AQG         Y++ D     R  + I
Sbjct: 16 VTTDSRHCPQGSMFIALKGETFNGNAFAAQALAQGCR-------YAVVDEPEYARGESYI 68

Query: 93 LVVD 96
          LV D
Sbjct: 69 LVDD 72


>gi|312872550|ref|ZP_07732618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091912|gb|EFQ50288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 45/329 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR   A  +FV +VG + DGH ++  A+A GA A +       Q   A    N
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAAL------WQKDHANRPEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+T   L   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLI 205
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L  I   
Sbjct: 133 TQ--ANF--NNEIGVP--------ITILEMKPTTEILV--LEMGMDRAGQLHHLSEIVCP 178

Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEVMKR 259
                T +G  HI++  T+    +AKM + + L  KE    I+  D     A ++++ + 
Sbjct: 179 DVCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIFNGDEPLLQARAQKLNQL 236

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               G       Y   F        +H     + ++      F  P+ G+  V NAL A 
Sbjct: 237 QATFGFNSTDTIYATNF-----NSYMH---HASFAINDSKVKFTIPMIGKHNVSNALAAI 288

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +    G+    + + L        R ++
Sbjct: 289 LVGRTFGVPDVEIAQALANFVPTANRMQW 317


>gi|229527526|ref|ZP_04416918.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|229335158|gb|EEO00643.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|327485027|gb|AEA79434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae LMA3894-4]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDTALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|170763998|ref|ZP_02636857.2| Mur ligase family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170710779|gb|EDT22961.1| Mur ligase family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 560

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 148/371 (39%), Gaps = 32/371 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK+S +  + +  +  G  S  +  T  I    +  +    +  Y AK +  
Sbjct: 165 IVSITGTNGKTSTSRLIYKGFENLGYFS-GLAMTGGIIINNEFVKKGDTTGFYSAKKV-- 221

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234
           L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+   
Sbjct: 222 LTNPQVEIGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITT 281

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGC----------RVLSVGYQGKFIHLKKVCA 284
            E+LP E   II A+     EV++   N             + +  G +  F+  K V  
Sbjct: 282 REVLP-EGKVIIKAEPKLY-EVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDKNVIF 339

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +     
Sbjct: 340 FDGKDKNIIS-NIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIEC--D 396

Query: 345 RFEFVGTNS----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +  +G  +       +I +DY H   + E +      I   +II +    GDR      
Sbjct: 397 VYNNIGRQNIIELENFKIILDYGHNPEAFEELFYLANKIKRNKIISIVSSPGDRLDEYIK 456

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTA 452
            +G+IA + +D  I+ +  + R  +  +I   I  GI     K   +       EAI+ A
Sbjct: 457 ELGRIAGENSDTIIIKETFDRRGREELEITNLIKSGINEIENKSVEVLSIIDEEEAIKKA 516

Query: 453 IEMLNKQDVLV 463
           I M  + D++V
Sbjct: 517 ISMAKEGDIIV 527


>gi|330815444|ref|YP_004359149.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
 gi|327367837|gb|AEA59193.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
          Length = 465

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 43/308 (13%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA A+VVS+A      +  A  R   PI+     R  +     RL     +  +A+ GT
Sbjct: 63  EGANAVVVSTAVRSDNPEVLAARRLRVPIV----PRAVMLAELMRL-----KQGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    GL  +F IG    + S   + RL               S   +
Sbjct: 114 HGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLG--------------SGDFI 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              + E+ +  L+ + +  I++I    TN+  DH+D +    A        F + LP   
Sbjct: 158 VAEADESDASFLNLYPV--IEVI----TNIDEDHMDTYGHDFARLKQAFIEFTQRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDF 300
            A++  DD   ++++        R  LS   +   +  ++V A   +   T+  +G    
Sbjct: 212 SAVVCVDDPNVRQIIPFISKPVVRYGLSPDAE---VRAEQVDARDGRMHFTVIRDGLAPL 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRI 358
             +  LPG   V NAL A  +   +G+  A + + L   + V  RF+  G    + GG  
Sbjct: 269 RVVLNLPGLHNVQNALAAIAIATDLGVADAAIQQALADFNGVGRRFQRYGELAAADGGSY 328

Query: 359 YV--DYAH 364
            +  DY H
Sbjct: 329 TLIDDYGH 336


>gi|218679971|ref|ZP_03527868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           etli CIAT 894]
          Length = 319

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS+ +D      +   AG   NL  DH+D H T Q Y + K    E L+     AI+
Sbjct: 27  VECSSYQIDLAPT--LDPSAGILLNLTPDHLDRHGTMQHYADVK----ERLVAGSDTAIV 80

Query: 247 YADDAYSKEVMKRAHNAGCRVLSV 270
             DD++S  +  R   AG +V+ +
Sbjct: 81  GIDDSHSALIADRVERAGVKVVRI 104


>gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
 gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 113/265 (42%), Gaps = 30/265 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           VS+D+R+I  G I+ A+ G   +G+ F  +A+ +GA+ A++   AY   D          
Sbjct: 14  VSTDTRNIAKGSIYFALKGASFNGNTFAAEALEKGAQYAVIDEVAYQTSD---------K 64

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +++V +    L   A+         ++ +TG++GK++    ++ +  +      Q+   +
Sbjct: 65  MILVSDVLTTLQELATYHRNTLKTLVIGITGSNGKTTTKELIKSVLSQ------QLNVVA 118

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +   +N +  P  +     LS      +  V + A+  G      +  +   G  T+
Sbjct: 119 TQGNL--NNNIGVPLTL-----LSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITS 171

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L   +   I  AD+  ++ ++    N      S G
Sbjct: 172 IGKAHLEGFGSFEGVIQTKGELYDYLKAHQKTIIANADNPITEALLADYDND----YSFG 227

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVE 296
             GK +++   C     Q VTI  E
Sbjct: 228 V-GKGVNVAVQCV--GTQPVTIQFE 249


>gi|153801140|ref|ZP_01955726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
 gi|124123373|gb|EAY42116.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDTALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|119358484|ref|YP_913128.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
 gi|166222971|sp|A1BJX7|MURC_CHLPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119355833|gb|ABL66704.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 466

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 287 NKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           N+ + T+   GK++  +   +PG   V NAL A    + +GI    ++  L +   +  R
Sbjct: 255 NRSRFTVRASGKEYPGVSLNVPGRHNVMNALAAFASGLELGIAPERIIAGLTRYSGMRRR 314

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+    NS G  +  DYAH  + ++  +K  R    +  I+ VF
Sbjct: 315 FQIKYDNSAGVLVVDDYAHHPSEVKAAVKAARDGWPNAEIVAVF 358


>gi|330443875|ref|YP_004376861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
 gi|328806985|gb|AEB41158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
          Length = 419

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 25/115 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTG++GK++  SF+  +    GLS+  +G   T              PI        L
Sbjct: 104 IGVTGSNGKTTTVSFLTHLFHTLGLSAVSMGNIGT--------------PI--------L 141

Query: 178 SSQGVTHVS-VEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             QGV+ +  VE SS  L DQ     +   + +  N+ ++H+DYH T  AY  AK
Sbjct: 142 ELQGVSGIRVVEISSFQLVDQEERIPV-FSSAALLNVCQNHLDYHDTMDAYMMAK 195


>gi|187926155|ref|YP_001892500.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|241665643|ref|YP_002984002.1| cyanophycin synthetase [Ralstonia pickettii 12D]
 gi|187727909|gb|ACD29073.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|240867670|gb|ACS65330.1| cyanophycin synthetase [Ralstonia pickettii 12D]
          Length = 886

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 151/390 (38%), Gaps = 58/390 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG------LSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           I+ +TGT+GK+ VA  V Q+ Q SG       S         + S A+ +R    +    
Sbjct: 488 IVGITGTNGKTVVAKLVAQMLQLSGKHTGLGCSDGLYLDRRQVESGARTDRAAWDA---- 543

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI-DYHQTQQAYFN 228
                 L ++ V     E+ S  +    L   +   G  TN G+ DH+ D++   +    
Sbjct: 544 --CHRILMNRAVEAAVFESDSGMILSQGLPYDRCQVGVVTNFGKPDHLGDFYVEDEDRMV 601

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMK------------------RAHNAGCRVLSV 270
           + +R   +++ K    ++ A DA   E+ +                   AH A       
Sbjct: 602 SVLRTQIDVVLKTGVGVLNAADARLVEMAELCDGEVIFFALSGDLEAIAAHRA------A 655

Query: 271 GYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G +  F+   KV       ++ ++ V      +   +P  FQ+ N L A     A+GI +
Sbjct: 656 GKRAVFVRDGKVVLATGPTELALADVSAIPLTYDGRVP--FQLENVLAAVATGWALGISN 713

Query: 330 ALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            L+   +    V    VPGRF        G  I VD AH +++LE +   +    + R  
Sbjct: 714 DLMRAGIMTFDVGQVDVPGRFTLF--QHHGATIVVDDAHNASALEALAAALDNFPAQRRT 771

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPE---KIRAEIIHGIPG--- 438
           +VFG G  R        G +     D  ++ +D + +  D E   + RA +  G+     
Sbjct: 772 LVFGAGLQRRDEDLVAQGTVIGQTFDRVLLCEDASVKRTDAEFDRQARALLKQGLQAGGR 831

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +E   R + +  A+  +   D+LV+
Sbjct: 832 VAEVVVEGAKRRDVVDAALSQVTAGDLLVL 861


>gi|15805794|ref|NP_294492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
 gi|6458474|gb|AAF10342.1|AE001931_13 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 13/123 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R    ++ DSR       FVA+ G K  G+ F+ +A+A GA  ++        D    +R
Sbjct: 18  RPARRLTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPFVLTD-----LDVPRAVR 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                  VD+ R  L  +A     K+P  ++ +TG++GK++  S+         +  F  
Sbjct: 73  -------VDDARGALFAWARSERAKNP-LVVGITGSAGKTTAKSYAAAALDAHFMPVFNT 124

Query: 148 GPT 150
            P 
Sbjct: 125 MPA 127


>gi|325108984|ref|YP_004270052.1| FolC bifunctional protein [Planctomyces brasiliensis DSM 5305]
 gi|324969252|gb|ADY60030.1| FolC bifunctional protein [Planctomyces brasiliensis DSM 5305]
          Length = 454

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 12/119 (10%)

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI------AIGIDSALVLEHLEKL 339
           H +QQV+++ +G+ +    P PG     NA +A   C+         + ++ +      +
Sbjct: 249 HREQQVSLNCDGETWKLRLPFPGSVYADNAAIAVA-CVHELASRGFPVPNSTIAAAARDI 307

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQG 397
            V+P RFE +  +     +  D AH + S+  ++K +R  + S  + V+     D+D  
Sbjct: 308 -VLPLRFEILDESP---VLIADSAHNAASIRALIKAVREHLPSQPVTVMLAVSSDKDHA 362


>gi|292490625|ref|YP_003526064.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291579220|gb|ADE13677.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 113/279 (40%), Gaps = 33/279 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S +  I    G   +F IG    ++S   + RL +           Y
Sbjct: 119 IAVAGTHGKTTTTSLIAGILGEGGFDPTFVIG--GRVNSIGANGRLGSG---------EY 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L ++     + E+ +  L       ++ +    TN+  DH+  +        A    F  
Sbjct: 168 LVAE-----ADESDASFLH------LQPLLAVVTNVDADHMGTYGGDFTALKAAFLEFLH 216

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            LP    A++  +D   +E++    + G  VL+ G  +     L+++  +  + Q  ++ 
Sbjct: 217 HLPFYGLAVVCLNDPVLRELLP---DIGRPVLTYGTCEDADYRLRELKHVQGRTQFRVAR 273

Query: 296 EGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--T 351
            G D     +  LPG     NAL A  +   +G + A +   LE    +  RF+  G   
Sbjct: 274 PGNDNWLTVVLNLPGAHNALNALAAMVVAHELGAEDAAIQRALEGFSGIGRRFQCYGEIA 333

Query: 352 NSRGGRIYV-DYAHTSNSLEMILKNIRTITSG-RIIVVF 388
             RG  + V DY H    L   L+ +     G R++VVF
Sbjct: 334 TPRGRVLLVDDYGHHPRELTATLEALHAGWPGRRVVVVF 372


>gi|317050622|ref|YP_004111738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
 gi|316945706|gb|ADU65182.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
          Length = 439

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 22/126 (17%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            Y ++   I+AVTGT+GKS+V + +  I Q+SG+S+   G             +  P+  
Sbjct: 93  FYQEYEGAIIAVTGTNGKSTVTALIAHILQQSGISAVAAG------------NIGLPALD 140

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            LA         G     +E SS  L+   +   +       N+  DH++ + T + Y +
Sbjct: 141 TLA--------LGCQVTVLELSSFQLET--IQTFRPDIAVLLNVTEDHLNRYDTFEHYVD 190

Query: 229 AKMRLF 234
           AK R+F
Sbjct: 191 AKERIF 196


>gi|253699155|ref|YP_003020344.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
 gi|259509788|sp|C6DZK4|MURD_GEOSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251774005|gb|ACT16586.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
          Length = 452

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 36/236 (15%)

Query: 178 SSQGVTHVSVEASS---HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S Q V  V VE SS    G++  R D   L+     N+  DH+D + + Q Y +AK+R+F
Sbjct: 153 SGQEVARVVVELSSFQLEGVESFRPDVAVLL-----NITEDHLDRYHSFQEYIDAKLRIF 207

Query: 235 EE-------LLPKESPAIIYADDAYSKEV--MKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           E        +L  + P +         ++  M R H        + Y+  FI        
Sbjct: 208 ENQTADDFAVLNIDDPLVAACASKLKAQLFPMSRLHELE---EGISYRDGFITFS----- 259

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           H  + +    EG      F L G   + N + +    + +  D     E ++    +P R
Sbjct: 260 HKGKVLRFGTEG------FKLKGVHNLDNIMASLASTLLMRCDGDCAYEAVKSFKGLPHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            E V      G  Y + +  +N +  ++K++ +  SG  I +   G D+     P+
Sbjct: 314 MELV--EEIDGVAYYEDSKGTN-VGSVVKSLESFDSG--ITLIAGGKDKGGSYEPL 364


>gi|160903087|ref|YP_001568668.1| UDP-N-acetylmuramate--alanine ligase [Petrotoga mobilis SJ95]
 gi|160360731|gb|ABX32345.1| UDP-N-acetylmuramate--alanine ligase [Petrotoga mobilis SJ95]
          Length = 452

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 10/182 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL  DH++++  +     + +  F +    +   I+  DD +    + + H    +VL 
Sbjct: 175 NNLRPDHLEHYNNEFEKLESSLYKFAK--NTKELVILNGDDVH----LNKWHLNEKKVLY 228

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   K  ++ K    +N  QV        +  D    LPG    Y+AL +  L + +GI
Sbjct: 229 FGQSEKADYIIKNRHQYNGYQVFEIYHKNTYIGDITLNLPGLHYAYDALASTALSLELGI 288

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-LEMILKNIRTITSGRIIV 386
           + + + E   + + V  RF  +  +     I  DYAHT +  LE I          +II 
Sbjct: 289 EFSTIKETFHRYNSVGRRFNIL-YDKDNLSIIDDYAHTPDEILETIKATKEYFPKRKIIT 347

Query: 387 VF 388
           +F
Sbjct: 348 IF 349


>gi|92114314|ref|YP_574242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
 gi|118595648|sp|Q1QVG5|MURD_CHRSD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91797404|gb|ABE59543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I A+TG++ KS+V + + ++ + SG  +            A    L TP       AL  
Sbjct: 113 IAAITGSNAKSTVTTLLGEMARESGWKT------------AVGGNLGTP-------ALDL 153

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L       + V E SS  L+     G    A  F NL  DH+D H   Q Y  AK R+F
Sbjct: 154 LDESPDAELFVLELSSFQLETTPWLGADTAA--FLNLSEDHLDRHGDMQGYRAAKQRIF 210


>gi|288937140|ref|YP_003441199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|290512563|ref|ZP_06551929.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
 gi|288891849|gb|ADC60167.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|289774904|gb|EFD82906.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IIAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDTDRELYV-LELSSFQLETT--SSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAKTCVVNADDALTMPV----RGADDRCISFGVDVGDYHLNR 242


>gi|255527653|ref|ZP_05394513.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296186918|ref|ZP_06855319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|255508666|gb|EET85046.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296048632|gb|EFG88065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
          Length = 458

 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 42/222 (18%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRL--YGKH-PENILAVTGTSGKSSVASFVQQICQR 139
           + ++R +TP L+  N +K  +   S +  + K+ P  +  VTG+ GK++  + +  I ++
Sbjct: 84  TPSMRIDTPALI--NAKKQGAYITSEMEEFIKYCPAKVYGVTGSDGKTTTTTLIYNILKQ 141

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G  ++ +G       F +  ++ +   + L      LSS  +  ++V            
Sbjct: 142 QGYKTW-VGGNIGTPLFTEIEKMKSDDKVVLE-----LSSFQLMTMNVSPE--------- 186

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TNL  +H+D H+  Q Y ++K  +F +    ES  I+  D+  +  +   
Sbjct: 187 ------VAVVTNLSPNHLDIHKDMQEYIDSKKNIF-KYQQSESLLILNRDNNLTNSMFNE 239

Query: 260 AHNAGCRVLSVGYQGK------------FIHLKKVCAIHNKQ 289
           A     RVL    + K            +I  K+VC ++  Q
Sbjct: 240 AKG---RVLEFSIKEKVKDGAYFEENKLYIKEKEVCKLNEIQ 278


>gi|160891418|ref|ZP_02072421.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|317478449|ref|ZP_07937609.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
 gi|156858825|gb|EDO52256.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|316905338|gb|EFV27132.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 35/281 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +GL+   +G    I +               + AL  
Sbjct: 103 MVCITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGN---------------SLALQV 144

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
            + Q   +V +E SS  LD   +   +       N+  DH+D Y    Q Y +AK R+ +
Sbjct: 145 ATEQHDYYV-IELSSFQLDN--MYNFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQ 201

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              P E   I + DD    +E+ K    A     +   +   I   +   +   + +  +
Sbjct: 202 NQTP-EDAFIFWNDDPIIKRELDKHGLRAHLYPFAAVKEDGAIAYVEDGEVEINEPIAFN 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E ++      L G   +YN+L A       GI    + + L     V  R E V T  R
Sbjct: 261 MEQEE----LALHGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVEHRLEKVAT-VR 315

Query: 355 GGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDR 394
           G     D   T+ NS    L+++    +G+ +++ G G D+
Sbjct: 316 GVSFINDSKATNVNSCWYALQSM----TGKTVLILG-GKDK 351


>gi|62178693|ref|YP_215110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224581969|ref|YP_002635767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|75484866|sp|Q57TD2|MURD_SALCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62126326|gb|AAX64029.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224466496|gb|ACN44326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322713146|gb|EFZ04717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 50/286 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +  E I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIELFCR--------EAQEPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L +    +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALMLLDADRELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E    K    ++
Sbjct: 158 ELSSFQLETT--SSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE----KAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--- 303
            ADDA +  V      A  R +S G      HL       N+QQ    +  K    L   
Sbjct: 212 NADDALTMPV----RGADERCVSFGVNMGDYHL-------NRQQGETWLRVKGEKVLNVK 260

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              L G+    NAL A  L  A+G+  A  L+ L     +  RF+ 
Sbjct: 261 EMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQL 306


>gi|254291457|ref|ZP_04962249.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
 gi|150422647|gb|EDN14602.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDTALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|160876819|ref|YP_001556135.1| UDP-N-acetylmuramate [Shewanella baltica OS195]
 gi|160862341|gb|ABX50875.1| UDP-N-acetylmuramate [Shewanella baltica OS195]
 gi|315269021|gb|ADT95874.1| UDP-N-acetylmuramate [Shewanella baltica OS678]
          Length = 463

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 118/291 (40%), Gaps = 47/291 (16%)

Query: 114 PEN-ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           PE  +LAV+GT GK+S +S +  I    G    F IG      +F    RL   +  ++ 
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIG--GVPQNFGVSARLGK-TAFFVV 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ---TQQAYFN 228
           +A  Y S+        +  S  +  H    +        NL  DH D        Q  FN
Sbjct: 161 EADEYDSA------FFDKRSKFVHYHPRTLV------INNLEFDHADIFADLAAIQKQFN 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV---------LSVGYQGKFIHL 279
             +R     +P E   I++  D+++   +K+  + GC            + G+ GK   L
Sbjct: 209 HLVRT----VPGEG-KIVWPADSHA---VKQTIDMGCWSEQETYHLAESTSGWYGK--AL 258

Query: 280 KKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              C      +  +  +G+    L + L G+  + NA++A      +G+  +  +E L K
Sbjct: 259 SDDC-----HRFEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAK 313

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                 R E +GT   G  +Y D+AH   ++   LK +R  +   +I VV 
Sbjct: 314 FMPPKRRLELLGT-VNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVL 363


>gi|54023316|ref|YP_117558.1| putative folylpolyglutamate synthetase [Nocardia farcinica IFM
           10152]
 gi|54014824|dbj|BAD56194.1| putative folylpolyglutamate synthetase [Nocardia farcinica IFM
           10152]
          Length = 493

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 22/228 (9%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKM-----RLFEELLPKESPAIIYADDAYSKEVM-KRAHN 262
            T +G DH +Y     A    +      R  E L+P+++ A+I   +  + EV+ +RA  
Sbjct: 202 ITPIGLDHTEYLGPDLASIAGEKAGIIKRAPESLVPRDTVAVIAQQEPEAMEVLLRRAVE 261

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGL 321
               V   G   +F  L +  A+   QQ+ +   G  +D +F PL GE Q  NA++A   
Sbjct: 262 VDAAVAREG--AEFTVLSRRIAV-GGQQLELQGLGGVYDEIFLPLHGEHQARNAVLALAA 318

Query: 322 C---IAIGIDSALVLEHLEKLHVV---PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                  G    L +E +         PGR E + +      I+VD AH       +   
Sbjct: 319 VEAFFGAGAQRQLDVEAVRAGFAAVASPGRMERMRSAP---SIFVDAAHNPAGARALATT 375

Query: 376 IRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           I T    R +V V    GD+D     I+  +     +I + T+ +PR+
Sbjct: 376 ISTEFDFRKLVGVIAVLGDKDAAG--ILEALEPVFDEIVVTTNGSPRA 421


>gi|330836865|ref|YP_004411506.1| FolC bifunctional protein [Spirochaeta coccoides DSM 17374]
 gi|329748768|gb|AEC02124.1| FolC bifunctional protein [Spirochaeta coccoides DSM 17374]
          Length = 460

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE Q  N  +A  +   +G   A   E   +  ++PGRF+ +     G  +Y+D AHT N
Sbjct: 271 GEVQAENCALALLVLKKLGQYQAGKTEAALETCLLPGRFQVLA--GCGTPLYIDGAHTVN 328

Query: 368 SLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDP 425
           SL  ++ + + I    +  V++G   D+D      M +I L+ A   IV T  + +  DP
Sbjct: 329 SLTRLMHSFKEIHDETKTTVIYGALLDKDHDH---MTRIILETAHTIIVSTPGHFKKSDP 385

Query: 426 EKIRA 430
           + + A
Sbjct: 386 DALYA 390


>gi|312874320|ref|ZP_07734352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653951|ref|ZP_07906867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325913189|ref|ZP_08175559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
 gi|311090193|gb|EFQ48605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315488647|gb|EFU78293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325477610|gb|EGC80752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 133/327 (40%), Gaps = 41/327 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR   A  +FV +VG + DGH ++  A+A GA A +       Q   A    N
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAAL------WQKDHANRPEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+T   L   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLI 205
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L   +L+
Sbjct: 133 TQ--ANF--NNEIGVP--------ITILEMKPTTEILV--LEMGMDRAGQLHHLS--ELV 176

Query: 206 AGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  T +G  HI++  T+    +AKM + + L  KE    I+  D     +  RA  
Sbjct: 177 CPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIFNGD--EPLLQARAQK 232

Query: 263 AGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 + G+     I+     +  +    TI+       F  P+ G+  V NAL A  +
Sbjct: 233 LNQLQATFGFNSTDTIYATNFNSYMHHASFTIN--DSKVKFTIPMIGKHNVSNALAAILV 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEF 348
               G+    + + L        R ++
Sbjct: 291 GRTFGVPDVEIAQALANFVPTANRMQW 317


>gi|294791082|ref|ZP_06756240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
 gi|294458979|gb|EFG27332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
          Length = 524

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           KI  V +DSR +  G +FVAI G + DGH ++ QA   GA A +V              +
Sbjct: 36  KITSVVTDSRQVSEGSLFVAIKGERVDGHDYVNQAARAGACAALVEHPVE--------GA 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVASFVQQICQR 139
             P LVV +T   L   A     +  +          ++ +TG+ GK++    V+ + Q 
Sbjct: 88  VLPQLVVTDTIGSLGRLARYNISRRRQIALAEGKDFTVVGITGSVGKTTTKDLVKDLLQT 147

Query: 140 SGLSSFQIG 148
           +G +   +G
Sbjct: 148 AGTTIAPVG 156


>gi|261867481|ref|YP_003255403.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412813|gb|ACX82184.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 124/343 (36%), Gaps = 67/343 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V+SSA    +          I V+   +    L   R +G      +AV GT GK
Sbjct: 77  GASVVVISSAIHGDNPEVMAAKEARIPVIQRAQMLAELMRFR-HG------IAVAGTHGK 129

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           ++  + V  I   +GL    +     +   A  N     S   +A+A     S+L  Q +
Sbjct: 130 TTTTAMVSMIYAEAGLDPTFV--NGGLVKSAGTNAHLGCSRYLIAEADESDASFLHLQPM 187

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +        +D +                  H D+ + +Q Y N     F   LP   
Sbjct: 188 ISIVTNIEPDHMDTY------------------HGDFDEMKQTYVN-----FLHNLPFYG 224

Query: 243 PAIIYADDAYSKEVMKR----------AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQ 289
            A++ ADD    E++            + NA  R+      G+QG   H   +C      
Sbjct: 225 LAVLCADDEVLMELVPLVGRQVITYGFSENADYRIEDYQQTGFQG---HYTVICP----- 276

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                  G+  D L  +PG     NA  A  +    GI +  +L  L        RF+ +
Sbjct: 277 ------NGERIDVLLNVPGRHNALNATAALVVAKEEGIKNDAILAALADFQGAGRRFDQL 330

Query: 350 GTNSR-GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           G   R  G++ +  DY H    + + ++  R    + RI+++F
Sbjct: 331 GQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIF 373


>gi|196249983|ref|ZP_03148678.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
 gi|196210497|gb|EDY05261.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 102/299 (34%), Gaps = 65/299 (21%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +FL   AS+         +AVTG+ GK++    +  + Q +  +S+ IG   T       
Sbjct: 92  RFLGELASKF------TSIAVTGSHGKTTTTGLLAHVMQGAHPTSYLIG-DGTGKGEPGS 144

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                 +  Y    LSY     +                           TN+  DH DY
Sbjct: 145 KYFVFEACEYRRHFLSYFPDYAI--------------------------ITNIDFDHPDY 178

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
                  F+A    F+++  +    I+   DD Y + +  +          +G +  F  
Sbjct: 179 FANIDDVFSA----FQQMAQQVKKGIVACGDDPYLQNIQAKV---PILFYGLGEENDF-- 229

Query: 279 LKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGID 328
                     + +  + EG  FD          F  P  G   V NAL    LC   GID
Sbjct: 230 --------QARNIVKTTEGTAFDVFVRNTFFASFTIPRFGTHNVLNALAVIALCHYEGID 281

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIV 386
           +  +   L+    V  RF      + G ++ + DYAH    +   L+  R    GR +V
Sbjct: 282 AGTIAARLQTFQGVKRRFS---EKTVGRQVLIDDYAHHPREIMATLEAARQKYPGREVV 337


>gi|103487369|ref|YP_616930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977446|gb|ABF53597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 459

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 25/243 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +F+A+ G   DGH FI +AIA GA  IV  +A            +
Sbjct: 25  VSGVAFDSREVTRGDLFIAMKGENADGHSFIDKAIAAGAAGIVCETAI-----------D 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V ++   L+   +    +    I+ VTG++GK+     +     R     F+ G 
Sbjct: 74  HPHVRVADSAAALNALGTASRARSHGRIIGVTGSAGKTGTKEALFAALDR-----FRPGK 128

Query: 150 T-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              ++ S+  +N +    P+ LA+ +   +  G+  + +  +       R+  ++     
Sbjct: 129 AHRSVKSY--NNHVGV--PLSLAR-MPSTADFGIFEMGMNHAGELAALTRI--VRPHVAI 181

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +   H+++  +++A  +AK  +FE L P  + AII  D  +   +  +A      ++
Sbjct: 182 VTTIAPAHMEFFGSEEAIADAKGEIFEGLEPGGT-AIIPFDSPHYARLRAKAEQHAAHIV 240

Query: 269 SVG 271
           S G
Sbjct: 241 SFG 243


>gi|325912429|ref|ZP_08174824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
 gi|325475771|gb|EGC78942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 133/327 (40%), Gaps = 41/327 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR   A  +FV +VG + DGH ++  A+A GA A +       Q   A    N
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAAL------WQKDHANRPEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+T   L   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLI 205
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L   +L+
Sbjct: 133 TQ--ANF--NNEIGVP--------ITILEMKPTTEILV--LEMGMDRAGQLHHLS--ELV 176

Query: 206 AGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  T +G  HI++  T+    +AKM + + L  KE    I+  D     +  RA  
Sbjct: 177 CPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIFNGD--EPLLQARAQK 232

Query: 263 AGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 + G+     I+     +  +    TI+       F  P+ G+  V NAL A  +
Sbjct: 233 LNQLQATFGFNSTDTIYATNFNSYMHHASFTIN--DSKVKFTIPMIGKHNVSNALAAILV 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEF 348
               G+    + + L        R ++
Sbjct: 291 GRTFGVPDVEIAQALANFVPTANRMQW 317


>gi|309779051|ref|ZP_07673818.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
 gi|308922116|gb|EFP67746.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
          Length = 886

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 151/384 (39%), Gaps = 46/384 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG------LSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           I+ +TGT+GK+ VA  V Q+ Q SG       S         + S A+ +R    +    
Sbjct: 488 IVGITGTNGKTVVAKLVAQMLQLSGKHTGLGCSDGLYLDRRQVESGARTDRAAWDA---- 543

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI-DYHQTQQAYFN 228
                 L ++ V     E+ S  +    L   +   G  TN G+ DH+ D++   +    
Sbjct: 544 --CHRILMNRAVEAAVFESDSGMILSQGLPYDRCQVGVVTNFGKPDHLGDFYVEDEDRMY 601

Query: 229 AKMRLFEELLPKESPAIIYADDAY--------SKEVMKRAHNAGCRVLSV----GYQGKF 276
           + +R   +++ K    ++ A DA           EV+  A       ++     G +  F
Sbjct: 602 SVLRTQIDVVLKTGVGVLNAADARLVEMADLCDGEVIFFALTGDLEAIAAHRAAGKRAVF 661

Query: 277 IHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           +   KV       ++ ++ V      +   +P  FQ+ N L A     A+GI + L+   
Sbjct: 662 VRDGKVVLATGPTELALADVSAIPLTYDGRVP--FQLENVLAAVATGWALGISNDLMRAG 719

Query: 336 LEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +    V    VPGRF        G  I VD AH +++LE +   +    + R  +VFG G
Sbjct: 720 ILTFDVGQVDVPGRFTLF--QHHGATIVVDDAHNASALEALAAALDNFPAQRRTLVFGAG 777

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPE---KIRAEIIHGIPG-------FI 440
             R        G +     D  ++ +D + +  D E   + RA +  G+          +
Sbjct: 778 LQRRDEDLVAQGTVIGQTFDRVLLCEDASVKRTDAEFDRQARALLKQGLQAGGRVAEVVV 837

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
           E   R + +  A+  +   D+LV+
Sbjct: 838 EGAKRRDVVDAALSQVTAGDLLVL 861


>gi|293375146|ref|ZP_06621434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292646252|gb|EFF64274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 460

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 10/181 (5%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G DH+D  +T + Y  AK  + + +  K +  I+ ADD   K++          
Sbjct: 183 GIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGT-LILNADDDNIKKISLEDFKGKII 241

Query: 267 VLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              VG    YQ   I       +       ++V  K +    P  G  QVYN++ A    
Sbjct: 242 YYGVGENSDYQASNIEF-----VPKGMSYILTVNNKRYKVFIPGYGVHQVYNSMAAIAAA 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI     ++ L     +   FE +   ++   I   +     SLE  +K +  I   
Sbjct: 297 YEVGISYRDSIKLLPSFKHLNSHFEVMKGLNQCQLIVDTWNINPTSLEASIKTMCEIAKN 356

Query: 383 R 383
           R
Sbjct: 357 R 357


>gi|270340242|ref|ZP_06007559.2| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
 gi|270332137|gb|EFA42923.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
          Length = 497

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 61/296 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTG++GK++  S +  I + +G   + +G    I           P   Y+      
Sbjct: 158 MICVTGSNGKTTTTSLIYHIFKNAG---YDVGLAGNIGRSLALQVAEDPHAYYI------ 208

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y    Q Y +AKMR+  
Sbjct: 209 ----------IELSSFQLDN--MYDFRANIAILLNITPDHLDRYDYKFQNYVDAKMRIIR 256

Query: 236 ELLPKESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               ++S  I + DD   K+ +++   H   C          F  LK+  +I        
Sbjct: 257 NQTEEDS-FIYWNDDPVVKKELEKYDIHAVQC---------PFSELKEKGSIG------- 299

Query: 294 SVEGKDFDFLFPLP-----------GEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHV 341
            +E   +   +P+P           G+  +YN+L AAGL   I GI    + + L     
Sbjct: 300 YIEEGQYKLEYPVPFNMEQERLSLTGKHNIYNSL-AAGLASNISGIRKEQIRKSLSDFPG 358

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           V  R E V      G  Y++ +  +N ++     + ++T+  I+++    G RD+G
Sbjct: 359 VEHRLEKVC--DVAGVHYINDSKATN-VDACWYALESMTTPTILII----GGRDKG 407


>gi|261211101|ref|ZP_05925390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
 gi|260839602|gb|EEX66213.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDTALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|255015709|ref|ZP_05287835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           2_1_7]
          Length = 441

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 111/290 (38%), Gaps = 48/290 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++       I + +G+    +G    + +         P  +Y+      
Sbjct: 101 MICITGSNGKTTTTMLTYHILKEAGV---DVGLAGNVGNSLALQVAEDPHAVYV------ 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y+   Q Y +AK R+ +
Sbjct: 152 ----------IELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQ 199

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               K+   I + DD   ++E+ KR   A        Y     H   V       QV I 
Sbjct: 200 N-QTKDDAFIFWNDDPIIAREIAKRHPEATL------YPFAETHENGVKGYTENNQVVIE 252

Query: 295 VEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                F     L  L G   +YN+L       A GI S +V  H EK+       +F G 
Sbjct: 253 TANGTFTMEQDLLALTGTHNLYNSL-------ASGIASKIVDIHDEKIRASLS--DFTGV 303

Query: 352 NSRGGRIY----VDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCGGDRD 395
             R  ++     VDY + S +  +      ++++T+  ++++ G     D
Sbjct: 304 EHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTTPVVLILGGTDKGND 353


>gi|218899066|ref|YP_002447477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228902418|ref|ZP_04066572.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
 gi|228966866|ref|ZP_04127910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|226711880|sp|B7IUS2|MURD_BACC2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218545114|gb|ACK97508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228792965|gb|EEM40523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228857162|gb|EEN01668.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADDA   E+   A   G +
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDY-SVINADDADVMEL--SADTKGQK 240

Query: 267 VL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +L S   + +     K  A++ K +  + V          LPG+  + N L A  +   +
Sbjct: 241 ILFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLPGQHNLENILAAMSIAKLL 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           G  +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 295 GTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM
           22836]
          Length = 823

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 131/335 (39%), Gaps = 33/335 (9%)

Query: 21  FPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY- 77
            P    E  I+ + +DSR +      +F A+     DGH +I +    G    VVS    
Sbjct: 15  MPTDLNETAISILLTDSRQVFFPDETLFFALKTKNNDGHRYISELYELGVRNFVVSDLQP 74

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
             +++      +   LVV +T   L   A+    +    ++ +TG++GK+ V  ++ Q+ 
Sbjct: 75  EWEEYE-----DANFLVVVHTLFALQRLAAYHRNQFNVPVIGITGSNGKTVVKEWLYQVL 129

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                  F I    T S  + ++++  P  ++   + + L   GV    V   S   +  
Sbjct: 130 HHD----FNI----THSPRSYNSQIGVPLSVWQMNSHTQL---GVFEAGV---SQPEEMA 175

Query: 198 RLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPAIIYADDAYSK 254
           +L+ I     G FTN+G+ H      Q+ + + K +  E  EL       I   ++    
Sbjct: 176 KLEAIINPTIGIFTNIGQAH------QEGFKSMKQKCLEKLELFINCDVIICEEENELVD 229

Query: 255 EVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           E M+ A  +  R+     G     +H+ KV  + N   +  S+ G    F  P      +
Sbjct: 230 ECMEIACLSHKRLTWSRKGSNKSPLHIMKVEKLGNSTTIHYSILGMASQFTIPFADNAAI 289

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            NA+      I + +    + + +  L  V  R +
Sbjct: 290 ENAIQVLATAIYLHLPLPDINQRMADLEPVAMRLD 324


>gi|251788248|ref|YP_003002969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya zeae
           Ech1591]
 gi|247536869|gb|ACT05490.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya zeae
           Ech1591]
          Length = 437

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 107/256 (41%), Gaps = 44/256 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   + +G    I   A +  L   S +Y+ +  S+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMARAAG---WAVGVGGNIGVPALE-LLKQESQLYVLELSSF 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S+ A+               A +  N+  DH + Y    Q Y  AK+R++E
Sbjct: 162 ---QLETTYSLHAA---------------AATILNVTEDHTNRYPLGLQQYRAAKLRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    I+ ADDA +  V      A  R LS G      HL       N+QQ    +
Sbjct: 204 ----NAKVCIVNADDALTMPV----RGADDRCLSFGVDVGDYHL-------NRQQGETWL 248

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             K    L      L G+    NAL A  L  A+GI  +  L  L     +P RF+    
Sbjct: 249 RVKGERVLNTREIKLVGQHNYTNALAALALADAVGIPRSSALIALTTFTGLPHRFQL--A 306

Query: 352 NSRGGRIYVDYAHTSN 367
             R G  +V+ +  +N
Sbjct: 307 LERNGVRWVNDSKATN 322


>gi|330973386|gb|EGH73452.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 74/335 (22%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238
           +  V                        TN+  DH+    T +  FN   + F E    L
Sbjct: 185 LVAV-----------------------VTNIDADHM---ATYEGDFNKLKKTFVEFLHNL 218

Query: 239 PKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGK---FIHLKKVCAI 285
           P    A++  DD   +E++   KR       + +A  R ++V   G    F  L++    
Sbjct: 219 PFYGLAVMCIDDPVVREILPLVKRPTLTYGFSESADIRAINVRQDGMLTFFTVLRR---- 274

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +++ + +SV          +PG   V N+L    +    G+    +++ L     V  R
Sbjct: 275 -DREPLDVSVN---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRR 324

Query: 346 FEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR 377
           F+  G     GG + +  DY H    +  ++  +R
Sbjct: 325 FQVYGELPVDGGHVMLVDDYGHHPREVAAVINAVR 359


>gi|309774771|ref|ZP_07669793.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917456|gb|EFP63174.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 523

 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 133/323 (41%), Gaps = 40/323 (12%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFA 157
           A RL  +H + +I+ +TG+ GK+SV + + ++           G  + Q+G T TI +  
Sbjct: 170 AQRLLQEHGDLSIIGITGSYGKTSVKTILNELLSGVYYTLMTPGSYNNQMGITLTIRTKL 229

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           Q          +L +   +L   G  HV      H L Q     +K   G  T++G  H+
Sbjct: 230 Q----------HLHEV--FLCEMGADHVR---EIHDLMQF----VKPRYGVVTSVGPQHL 270

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKF 276
               +     + KM++ E  LP +    +  D+AY +    +     C ++  G ++   
Sbjct: 271 ATFGSMDNILHEKMQMIE-CLPLDGIGFVNRDNAYIQSYTIKN---KCHIVWFGMHESAD 326

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                +         T++ E ++  F   L G+  V N   A  +   +GI   ++   +
Sbjct: 327 YRCSNIRYSEEGTSFTVTAENQEHSFHTRLLGKHNVVNITCAIAVAHTLGISWEIMALAV 386

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGC--GG 392
           EKL  V  R +      +     +D A+ SN       L+ I+ +   R I+  G    G
Sbjct: 387 EKLPYVEHRLQV----RKSFCTLLDDAYNSNPEGARCALEVIKQMKHKRFIITPGFLELG 442

Query: 393 DRDQGKRPIMGKIALDLADIAIV 415
           ++ + ++  +G+   D  D+A++
Sbjct: 443 EKQEEEQYTLGQEIADSVDVALL 465


>gi|303238914|ref|ZP_07325445.1| protein of unknown function DUF1727 [Acetivibrio cellulolyticus
           CD2]
 gi|302593547|gb|EFL63264.1| protein of unknown function DUF1727 [Acetivibrio cellulolyticus
           CD2]
          Length = 467

 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           LPG + +YNAL AA     +G+ +  ++E LE      GR E + TN +  +I
Sbjct: 281 LPGLYNIYNALAAAACGTVLGLPAGNLVEALENFECGFGRMETITTNGKTIKI 333


>gi|256841648|ref|ZP_05547154.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
 gi|256736542|gb|EEU49870.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
          Length = 445

 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 111/290 (38%), Gaps = 48/290 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++       I + +G+    +G    + +         P  +Y+      
Sbjct: 105 MICITGSNGKTTTTMLTYHILKEAGV---DVGLAGNVGNSLALQVAEDPHAVYV------ 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y+   Q Y +AK R+ +
Sbjct: 156 ----------IELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQ 203

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               K+   I + DD   ++E+ KR   A        Y     H   V       QV I 
Sbjct: 204 N-QTKDDAFIFWNDDPIIAREIAKRHPEATL------YPFAETHENGVKGYTENNQVVIE 256

Query: 295 VEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                F     L  L G   +YN+L       A GI S +V  H EK+       +F G 
Sbjct: 257 TANGTFTMEQDLLALTGTHNLYNSL-------ASGIASKIVDIHDEKIRASLS--DFTGV 307

Query: 352 NSRGGRIY----VDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCGGDRD 395
             R  ++     VDY + S +  +      ++++T+  ++++ G     D
Sbjct: 308 EHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTTPVVLILGGTDKGND 357


>gi|309809589|ref|ZP_07703446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170070|gb|EFO72106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 133/327 (40%), Gaps = 41/327 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR   A  +FV +VG + DGH ++  A+A GA A +       Q   A    N
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAAL------WQKDHANRPEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+T   L   A     K    ++ +TG++GK++    V  +  +     F +  
Sbjct: 77  IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLI 205
           T   ++F  +N +  P        ++ L  +  T + V     G+D+    H L   +L+
Sbjct: 133 TQ--ANF--NNEIGVP--------ITILEMKPTTEILV--LEMGMDRAGQLHHLS--ELV 176

Query: 206 AGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  T +G  HI++  T+    +AKM + + L  KE    I+  D     +  RA  
Sbjct: 177 CPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIFNGD--EPLLQARAQK 232

Query: 263 AGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 + G+     I+     +  +    TI+       F  P+ G+  V NAL A  +
Sbjct: 233 LNQLQATFGFNSTDTIYATNFNSYMHHASFTIN--DSKVKFTIPMIGKHNVSNALAAILV 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEF 348
               G+    + + L        R ++
Sbjct: 291 GRTFGVPDVEIAQALANFVPTANRMQW 317


>gi|228909738|ref|ZP_04073561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
 gi|228850027|gb|EEM94858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADDA   E+   A   G +
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDY-SVINADDADVMEL--SADTKGQK 240

Query: 267 VL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +L S   + +     K  A++ K +  + V          LPG+  + N L A  +   +
Sbjct: 241 ILFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLPGQHNLENILAAMSIAKLL 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           G  +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 295 GTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|209696051|ref|YP_002263981.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
 gi|226706336|sp|B6ELH4|MURC_ALISL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|208010004|emb|CAQ80327.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
          Length = 487

 Score = 40.0 bits (92), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 113/287 (39%), Gaps = 50/287 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  +   QI   +GL  +F  G    + +   + RL + S   +A+A   
Sbjct: 125 IAVAGTHGKTTTTALTTQIYSEAGLDPTFVNG--GLVKNAGTNARLGS-SRFLIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A M 
Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFEVLKQTFIDFLHNLPFYGQAVMC 233

Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               +  ELLP+ S  +I   ++DDA              R+++   +G+    K    +
Sbjct: 234 IDDDVVRELLPRVSRQVITYGFSDDA------------DVRLINYRQEGQ----KSFFTV 277

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             K +        D D +  +PG+    NA  A  +     ++ + +L  L        R
Sbjct: 278 QRKDRT-------DLDIVLNIPGKHNALNATAAIAVATEEDVEDSAILSALLNFEGAGRR 330

Query: 346 FEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+ +G    G     +  DY H    +++ +K  R      R++++F
Sbjct: 331 FDQLGEFETGNGHAMLVDDYGHHPTEVDVTIKAARAGWEDKRLVMIF 377


>gi|260201274|ref|ZP_05768765.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 205

 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 45  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 101

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           R+  P+LV    R  L   A+ +YG HP   L V
Sbjct: 102 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTV 134


>gi|260891629|ref|ZP_05902892.1| UDP-N-acetylmuramate--alanine ligase [Leptotrichia hofstadii F0254]
 gi|260858639|gb|EEX73139.1| UDP-N-acetylmuramate--alanine ligase [Leptotrichia hofstadii F0254]
          Length = 453

 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 8/180 (4%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+H T    F    + FE+ +       +   D   K V     N      S
Sbjct: 179 TNIEADHLDHHGT----FENIKKSFEQFIDSTEKIAVLCKDTVEK-VGLNIKNKNVVWYS 233

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +  +   I+ K +   +      +  +G+D   F   +PGE  V N+L           +
Sbjct: 234 IKDETADIYAKNIRVENGITSFEVVKKGEDLGTFSLSIPGEHNVSNSLPVIYFAHEFKCN 293

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V E + K      R++ +  N+   R+  DYAH    +++ +        G++ V+F
Sbjct: 294 MKKVKERILKFKGANRRYQVIYDNNL--RLIDDYAHHPTEVKVTINAAHNTEKGKVTVIF 351


>gi|229111928|ref|ZP_04241472.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock1-15]
 gi|228671492|gb|EEL26792.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock1-15]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G++FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEEFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K I        +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTIEAHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+   +K+ +          E  N  EAI T +EM+
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE--NWKEAIDTKVEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 AENDVFIITG 417


>gi|294056592|ref|YP_003550250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615925|gb|ADE56080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 457

 Score = 40.0 bits (92), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D+R +Q+G  F+A+     DGH F+ QA+A GA + +VS    L           P LVV
Sbjct: 32  DTRQLQSGDCFIALTAGARDGHDFVEQALAAGAGSALVSRPLDLP---------IPQLVV 82

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           ++T   +    + +       ++ VTG+ GK+S    ++ +   S
Sbjct: 83  EDTLLAMEAIGAAVRAAFSGPVVGVTGSCGKTSTKEMLRLVLGES 127


>gi|325838831|ref|ZP_08166678.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490694|gb|EGC93003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 460

 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 10/181 (5%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G DH+D  +T + Y  AK  + + +  K +  I+ ADD   K++          
Sbjct: 183 GIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGT-LILNADDDNIKKISLEDFKGKII 241

Query: 267 VLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              VG    YQ   I       +       ++V  K +    P  G  QVYN++ A    
Sbjct: 242 YYGVGENADYQASNIEF-----VPKGMSYILTVNNKRYKVFIPGYGVHQVYNSMAAIAAA 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +GI     ++ L     +   FE +   ++   I   +     SLE  +K +  I   
Sbjct: 297 YEVGISYRDSIKLLPSFKHLNSHFEVMKGLNQCQLIVDTWNINPTSLEASIKTMCEIAKN 356

Query: 383 R 383
           R
Sbjct: 357 R 357


>gi|304380665|ref|ZP_07363336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340772|gb|EFM06701.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
          Length = 444

 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 170 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 199

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +  +       + V
Sbjct: 200 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQIMDKGTAFDVYV 254

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 255 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 312

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 313 NQVIVDDYAHHPREISATIETAR 335


>gi|296125247|ref|YP_003632499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
 gi|296017063|gb|ADG70300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 32  EVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           E+S+DSR    +  +F+AI G+K DG+ F  +   +G    ++S      D +  +  N 
Sbjct: 34  EISTDSRDSFDSTKLFLAIKGDKFDGNKFALETYNKGCRYFILS------DQTINMPDNA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            +   D+T  F    A     +    I++VTG+ GK++      
Sbjct: 88  KVFYTDDTILFFIKLAREYRRRFNIPIISVTGSCGKTTTKELTH 131


>gi|227499842|ref|ZP_03929935.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
 gi|227217951|gb|EEI83224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 113/286 (39%), Gaps = 33/286 (11%)

Query: 105 FASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            + RLY   P+  I+++TGT+GK+S  S V  I   + + S  +G               
Sbjct: 89  LSYRLY---PQAKIISITGTNGKTSSTSMVNHIVNEACIKSIAVGNIG------------ 133

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                     L  + +      + E SS  L  H            TN+  DHID+H + 
Sbjct: 134 -------EGILWQMYNNKDAFFACELSSFQL--HDTKTYHPHIACITNITEDHIDWHGSF 184

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y N+K+ + +     E+  +I   +    +  K+ + A     S   + +     K  
Sbjct: 185 EDYINSKLNITKN--QDENDFLIINHEDKILQDHKKDYKAQVYEFSSKNEVERGAYLKDG 242

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           AI+ K +  I V   D D L  + G     N +VA       GI    +++ L     + 
Sbjct: 243 AIYLKDKEEIKV--IDVDEL-SVIGSHNYENIMVALLSTYLFGIKIQDIIKGLRSFKAIE 299

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            R E+V T  R  +IY D   T  +++  +K I + T   II+  G
Sbjct: 300 HRLEYVDT-IRKVKIYNDSKGT--NVDSSIKAIESFTEPLIIIAGG 342


>gi|293375435|ref|ZP_06621716.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325844415|ref|ZP_08168142.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
 gi|292645988|gb|EFF64017.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325489089|gb|EGC91473.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
          Length = 543

 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 28/197 (14%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           G  T++G  H++  +T     N K   FE  E LP++    I  DD   ++  +      
Sbjct: 275 GVLTSVGPQHLETFKTID---NVKQTKFELIEYLPEDGIGFINIDDENIRDYYENKFQGK 331

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYN 314
           C+V + G + +        A +    + +S +G  F+  F           L G   +YN
Sbjct: 332 CKVYTYGIERE--------ADYRASDIEVSEKGTTFNVHFKDGRVETFQTKLLGLHNIYN 383

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL--EMI 372
            L + GL   +GI    +   + K+  V  R E       G    +D A  SN +  +M 
Sbjct: 384 TLASIGLGYELGIPVEKMQMAVRKMKPVTHRLEL---RRNGNFTIIDDAFNSNPVGSKMA 440

Query: 373 LKNIRTITSGRIIVVFG 389
           L+ +  +   RI++  G
Sbjct: 441 LEVLGQMNGKRIVITPG 457


>gi|332363491|gb|EGJ41273.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK355]
          Length = 459

 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 37/238 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQ---RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAK 172
           I+ +TG++GK++  + + Q+     ++GL S  IG P S ++        T  S   L  
Sbjct: 123 IIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ-------TASSKDTLVM 175

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            LS     G+     +             I +I    TNL   H+DYH + + Y  AK  
Sbjct: 176 ELSSFQLMGIEAFHPQ-------------IAVI----TNLMPTHLDYHGSLEEYAAAKWN 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + + +   +   + +  D ++KE+  +A  A     S   +    +L+        + + 
Sbjct: 219 IQKNMTADDYLVLNFNQD-WAKEMASQAQ-ATVVPFSTTEKVDGAYLEGDVLTFRGEAIM 276

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + E         +PG   + NAL    +    GID+  + E L     V  R ++VG
Sbjct: 277 QAAE-------IGVPGSHNIENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVG 327


>gi|313893665|ref|ZP_07827233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441809|gb|EFR60233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 456

 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 17/166 (10%)

Query: 194 LDQHRLDGIK---LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L  ++L+ IK    I     N+  DH+  H+T + Y  AK R+FE  L K    ++  DD
Sbjct: 164 LSSYQLETIKHFRPIGAIMLNITPDHLARHKTMENYIAAKERIFENQL-KSDYLVLNIDD 222

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                V    H A   +L +  +     G + +    C +      T  +  KD      
Sbjct: 223 PI---VADMEHRAPSHILQISQKQTVENGAY-YANGQCYVVKNGVATAVIGDKDIH---- 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +PG   + N L    L  A+G+    +   + + H V  R E V T
Sbjct: 275 IPGSHNIENILTVIALTYALGVPVVEIHRIISEFHGVEHRLERVKT 320


>gi|312148110|gb|ADQ30769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi JD1]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IVAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               Y   K ++F   + + S  +I  D AY K   K
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYCKYFSK 231


>gi|312890789|ref|ZP_07750319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296752|gb|EFQ73891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 12/109 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I  G IF A+ G+K D + F  QA+  GA   V+ +     D++ + +     
Sbjct: 16  ISTDTRKIIPGSIFFALKGDKFDANTFAQQALDAGAAYAVIDNG----DYNVSQKC---- 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR 139
           ++VD+    L   A   Y +   NI  + +TG++GK++    ++ +  +
Sbjct: 68  ILVDDVLSCLQNLAR--YHRKQLNIPFVGLTGSNGKTTTKELIRAVLSQ 114


>gi|283458379|ref|YP_003363003.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rothia mucilaginosa
           DY-18]
 gi|283134418|dbj|BAI65183.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rothia mucilaginosa
           DY-18]
          Length = 528

 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 20/118 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT+GK++    V  I + +G  S Q+G                  PI  A A    
Sbjct: 161 LCLTGTNGKTTTVGMVDSILKAAGKKSIQVGNVGM--------------PIVYAIA---- 202

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +     +VE SS  L  H    +   A    N+  DH+D+H +   Y   K R++E
Sbjct: 203 DDEPYEFFAVELSSFQL--HWTYSMSPYASVVLNIAEDHVDWHGSFDGYKADKARVYE 258


>gi|225548647|ref|ZP_03769694.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 94a]
 gi|225370677|gb|EEH00113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 94a]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IVAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               Y   K ++F   + + S  +I  D AY K   K
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYCKYFSK 231


>gi|329116440|ref|ZP_08245157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
 gi|326906845|gb|EGE53759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
          Length = 452

 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 98/251 (39%), Gaps = 63/251 (25%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAK 172
           I A+TG++GK++  + +  +   +G S+   G    P S ++  A++N           +
Sbjct: 114 IFAITGSNGKTTTTTMIADVLNHAGQSALLSGNIGFPASEVAVDAKEND----------R 163

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +  LSS  +          G+DQ R   I +I    TNL   HIDYH + + Y NAK  
Sbjct: 164 LIMELSSFQLM---------GVDQFR-PHIAVI----TNLMPTHIDYHGSFEEYVNAKWN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEV-------------MKRAHNAGCRVLSVGYQGKFIHL 279
           +   +  K+   I+  D   S ++              K    A C    + ++G++   
Sbjct: 210 IQNNMSDKDF-LILNGDQEISYDLANKTKATILYFSSQKEVDGAYCLDGKLYFEGEY--- 265

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                I +  Q+ +             PG   V NAL    +     +D+  + E L   
Sbjct: 266 -----IMDADQIGV-------------PGLHNVENALATIAVAKLANVDNDSIKETLASF 307

Query: 340 HVVPGRFEFVG 350
             V  R ++VG
Sbjct: 308 GGVKHRLQYVG 318


>gi|262383988|ref|ZP_06077124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
 gi|262294886|gb|EEY82818.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
          Length = 445

 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 111/290 (38%), Gaps = 48/290 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++       I + +G+    +G    + +         P  +Y+      
Sbjct: 105 MICITGSNGKTTTTMLTYHILKEAGV---DVGLAGNVGNSLALQVAEDPHAVYV------ 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y+   Q Y +AK R+ +
Sbjct: 156 ----------IELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQ 203

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               K+   I + DD   ++E+ KR   A        Y     H   V       QV I 
Sbjct: 204 N-QTKDDAFIFWNDDPIIAREIAKRHPEATL------YPFAETHENGVKGYTENNQVVIE 256

Query: 295 VEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                F     L  L G   +YN+L       A GI S +V  H EK+       +F G 
Sbjct: 257 TANGTFTMEQDLLALTGTHNLYNSL-------ASGIASKIVDIHDEKIRASLS--DFTGV 307

Query: 352 NSRGGRIY----VDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCGGDRD 395
             R  ++     VDY + S +  +      ++++T+  ++++ G     D
Sbjct: 308 EHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTTPVVLILGGTDKGND 357


>gi|221141545|ref|ZP_03566038.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|269941218|emb|CBI49606.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|302751566|gb|ADL65743.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|329314414|gb|AEB88827.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 437

 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +  +       + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQIMDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|206575746|ref|YP_002240440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
 gi|206564804|gb|ACI06580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IIAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDTDRELYV-LELSSFQLETT--SSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAKTCVVNADDALTMPV----RGADDRCISFGVDVGDYHLNR 242


>gi|90413041|ref|ZP_01221039.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
 gi|90326056|gb|EAS42495.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 132/337 (39%), Gaps = 53/337 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  +VVS+A +  +          I VV        L   R +G      +A+ GT G
Sbjct: 80  NGASVVVVSTAIAQDNPELVAARELRIPVVRRAEMLAELMRYR-HG------IAIAGTHG 132

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  + + QI   +GL  +F  G    + S   + RL   S   +A+A     S+L  Q
Sbjct: 133 KTTTTALMTQIYFEAGLDPTFVNG--GLVKSAGTNARLGC-SRYLIAEADESDASFLHLQ 189

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V                        TN+  DH+D +             F   LP 
Sbjct: 190 PMVSV-----------------------VTNIEADHMDTYGGDFEVLKQTFIDFLHNLPF 226

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVE 296
              A++  DD   +E++ R    G ++++ G+      + +  K+     ++   TI   
Sbjct: 227 YGLAVMCVDDPVVRELLPR---IGRQIITYGFSDDADVRIVEYKQYA---HQGHFTIVRA 280

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK D +    +PG+    NA  A  +    G+D   ++  L +      RF+ +G    G
Sbjct: 281 GKPDLNVKLNIPGKHNALNATAAVAVATEEGVDDDAIIRALLEFEGTGRRFDHLGEFDTG 340

Query: 356 -GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            G + +  DY H  + +++ ++  R      R++++F
Sbjct: 341 NGSVMLVDDYGHHPSEVDVTIQAARAGWEKKRLVMIF 377


>gi|270263957|ref|ZP_06192225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
 gi|270042150|gb|EFA15246.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
          Length = 439

 Score = 40.0 bits (92), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   + +G    I                   ALS 
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WAVGVGGNIG----------------LPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      +K  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LRQECQLYV-LELSSFQLETTF--SLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                 +  ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAALCVVNADDALTMPV----RGADQRCISFGADVGDYHLNR 242


>gi|256827370|ref|YP_003151329.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cryptobacterium
           curtum DSM 15641]
 gi|256583513|gb|ACU94647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cryptobacterium
           curtum DSM 15641]
          Length = 541

 Score = 40.0 bits (92), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 113/286 (39%), Gaps = 52/286 (18%)

Query: 131 SFVQQICQRSGLSSF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    I Q++G+ +     IG T   +  A D      + +Y+A+  SY  +  +     
Sbjct: 141 ALTAHILQQAGMRARAVGNIGDTCLAAVMAHD------TDVYVAEVSSYQLASTI----- 189

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                    H    + +I     N+  DH+ +HQT + Y  AK R+   L   ++P  + 
Sbjct: 190 ---------HFAPNVAVI----LNITPDHLTWHQTHENYVAAKFRILANL--NQTPGALA 234

Query: 248 ADDAYSKEVMKR----AH---NAGCRVLSVGYQGKFI-HLKKVCAIHNK-------QQVT 292
             +A  + V  R    AH     G   + VG        ++ +C   N        + +T
Sbjct: 235 VLNAVDETVRARVRTLAHATEQCGFAYIPVGTAAGLAGDMRTICGSENAAFIEGSDRWLT 294

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +++  +           +PGE  V NAL AA  CIA+G     +   L     +  R E 
Sbjct: 295 VALAKEQHRLCRADDLLIPGEHNVSNALAAATACIAVGASDDAITRGLTTFTALSHRLEA 354

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            GT  RG   Y D   T  +++  LK +   +  R IV+ G G D+
Sbjct: 355 CGT-IRGVTCYDDSKAT--NVDATLKALAAFSPRRPIVLLG-GSDK 396


>gi|224534651|ref|ZP_03675223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           spielmanii A14S]
 gi|224513899|gb|EEF84221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           spielmanii A14S]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 27/168 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I++VTGT GKS++ S + ++ ++      ++G    +S  +  ++
Sbjct: 102 ISLFL--IFNKNP--IISVTGTKGKSTLVSLLYRVLKKK-YPKVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGRSPLIL-----------------ELSSWQL--QSLENFNPILSIITNVYNDHQNYYS 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
               Y   K ++F   + + S  +I  D AY K   K    A   + S
Sbjct: 198 NFDDYIVDKSKIF---VNQTSGIVIIQDKAYYKYFSKFESKAKVILFS 242


>gi|153830112|ref|ZP_01982779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
 gi|148874424|gb|EDL72559.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|87123322|ref|ZP_01079173.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. RS9917]
 gi|86169042|gb|EAQ70298.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. RS9917]
          Length = 483

 Score = 40.0 bits (92), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG   + N   A   C   G++ + +   LE+L     RF+F G + +G +I  DYA
Sbjct: 276 LPLPGLHNLSNVTGALAACRLAGVEFSRLQRGLEQLQAPGRRFDFRG-DWQGRQIVDDYA 334

Query: 364 HTSNSLEMILKNIR-TITSGR 383
           H  + +   L   R  ++SGR
Sbjct: 335 HHPSEVSATLTMARLMVSSGR 355


>gi|322436407|ref|YP_004218619.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX9]
 gi|321164134|gb|ADW69839.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX9]
          Length = 478

 Score = 40.0 bits (92), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 110/276 (39%), Gaps = 26/276 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V GT GK++  S +  I + +     +  P+  I   A++   +     ++ +A    
Sbjct: 113 LVVAGTHGKTTTTSMLAWIYETAAKYDAKFAPSFLIGGVAENFGAS-----FMVRATRPF 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +G      E  +   D+    G K +     A   T++  DH D +    A   A  R
Sbjct: 168 LLEGD-----EYDTAFFDK----GPKFLHYFPDAAILTHVEFDHADIYDDLNAVKTAFKR 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
            F  L+P+    + Y  +    E + +A    C V   G   G +  +  + A     + 
Sbjct: 219 -FVNLIPRRGRLVAYDGNVNVTECVAKAF---CAVERYGLAPGSYWRVTGLTADEGGTRW 274

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +G+ F +   P+PGE    NA  AAGL    G+    + E L     V  R E V 
Sbjct: 275 TLERDGEFFAELKLPMPGEHNALNATAAAGLAAGQGVAVEAIKEALATFRSVKRRLE-VR 333

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
               G  +  D+AH   ++   L+ ++   +GR +V
Sbjct: 334 AEVNGITVIEDFAHHPTAIRETLRALKASYAGRRLV 369


>gi|229513465|ref|ZP_04402929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
 gi|229521606|ref|ZP_04411024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229341200|gb|EEO06204.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229349342|gb|EEO14298.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|83312948|ref|YP_423212.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetospirillum magneticum
           AMB-1]
 gi|109892710|sp|Q2W0H2|MURC_MAGMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|82947789|dbj|BAE52653.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 82/194 (42%), Gaps = 28/194 (14%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D++ T +    A  R F E +P    A +  D    + ++ R  +   ++++
Sbjct: 182 TNIDPEHMDHYGTVERLHEA-FRTFVENIPFYGFAAMCIDHPEVQALVARVPDR--KLVT 238

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----------------FPLPGEFQVY 313
            G+  +        A+   +++++ + G  +D +                 P+ GE  V 
Sbjct: 239 YGFNHQ--------ALVRVEKLSMDITGARYDVVITDRVTGATRTIADIHLPMYGEHNVL 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L A  +   +G+ + +V   L     V  RF   G  ++G  +  DY H    +  +L
Sbjct: 291 NSLAAIAVANELGLPNDVVKTALGGFKGVKRRFTRTG-EAKGVTVIDDYGHHPVEIAAVL 349

Query: 374 KNIRTITSGRIIVV 387
           K  R+   G +I V
Sbjct: 350 KAARSACQGNVIAV 363


>gi|307132585|ref|YP_003884601.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
 gi|306530114|gb|ADN00045.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
          Length = 437

 Score = 40.0 bits (92), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++   +G   + +G    I   A +  L   S +Y+ +  S+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAHAAG---WAVGVGGNIGVPALE-LLKQESQLYVLELSSF 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S+ A+               A +  N+  DH + Y    Q Y  AK+R++E
Sbjct: 162 ---QLETTYSLHAA---------------AATILNVTEDHTNRYPLGLQQYRAAKLRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    I+ ADDA +  V      A  R LS G      HL       N+QQ    +
Sbjct: 204 ----NAKVCIVNADDALTMPV----RGADARCLSFGVDVGDYHL-------NRQQGETWL 248

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             K    L      L G+    NAL A  L  A+GI  +  L  L     +P RF+ 
Sbjct: 249 RVKGERVLNTREIKLVGQHNYTNALAALALADAVGIPRSSALIALTSFTGLPHRFQL 305


>gi|289443664|ref|ZP_06433408.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
 gi|289416583|gb|EFD13823.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 219

 Score = 40.0 bits (92), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A  + + +   
Sbjct: 59  DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           R+  P+LV    R  L   A+ +YG HP   L V
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTV 148


>gi|262037242|ref|ZP_06010724.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
 gi|261748714|gb|EEY36071.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
          Length = 447

 Score = 40.0 bits (92), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 104/282 (36%), Gaps = 30/282 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+++H T   Y N K + FE+ +       I   D      +    N      S
Sbjct: 179 TNVEPDHLEHHGT---YENIK-KSFEKFIDSTEKLAILCKDCEDMSTL-NIKNKNIIWYS 233

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +  +   I    +          +   GK+  +F   +PGE  V N+L    L    G +
Sbjct: 234 IKKEDVHIFATNITVKDGCTHYEVIKNGKNLGEFTLCIPGEHNVSNSLPVIYLADEAGCN 293

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V E L +      R++ +    +  RI  DYAH    +++ ++  +    G + V+F
Sbjct: 294 MDTVKERLAQFKGANRRYQVI--YDKNLRIIDDYAHHPTEIKVTIEAAKATEKGNVTVIF 351

Query: 389 GCGGDRDQGKRPIMGKIALD-------------LADIAIVTDDNPRSEDPEKIRAEIIHG 435
                  Q  R    K   D             L  I    +DN      EK+  +I +G
Sbjct: 352 -------QPHRYSRTKFFFDDFVTSLKKADELILLPIYSAGEDNIYDVSSEKLAEKIGNG 404

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +  + E+   I+ +    E  NK  V + AG   +  H + N
Sbjct: 405 VKVYSEE--EIQKLVKDNENSNKSYVFMGAGSVSKLAHEIKN 444


>gi|256825479|ref|YP_003149439.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kytococcus
           sedentarius DSM 20547]
 gi|256688872|gb|ACV06674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kytococcus
           sedentarius DSM 20547]
          Length = 528

 Score = 40.0 bits (92), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 32/209 (15%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGAE +V S     S     A  R+  P+     +   L+       G  P   L VTGT
Sbjct: 111 QGAEVVVTSPGLRPSTPLLEAARRAGIPVW----SEVELAWRMRPSQGAAP--WLCVTGT 164

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V   +  + +  G  +   G   T              PI  A     L      
Sbjct: 165 NGKTTVVRMLTAMLEAGGERAVAAGNVGT--------------PIMEA----ILDPTRFG 206

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            ++VE SS  L  H    +   A    N+  DH+D+H + +AY   K R+       +  
Sbjct: 207 AIAVELSSFQL--HHTWTVSPEASCVLNIAADHVDWHGSIEAYAGDKGRIHHN---AQVA 261

Query: 244 AIIYADDAYSKEVMKRAHNA-GCRVLSVG 271
           A+    D  ++ ++++A    GCR +  G
Sbjct: 262 AVYNVQDEVTRTLVEQADVVEGCRAVGFG 290


>gi|220933950|ref|YP_002512849.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995260|gb|ACL71862.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 475

 Score = 40.0 bits (92), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 118/309 (38%), Gaps = 39/309 (12%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  Q A+ +VVSSA   ++          I VV        L   R       + +AV G
Sbjct: 67  AYVQDADVLVVSSAIDPRNPELIAAREARIPVVRRAEMLAELMRFR-------HGIAVAG 119

Query: 123 TSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S V  +    GL  +F IG    ++S A  +RL                 QG
Sbjct: 120 THGKTTTTSLVASLLAEGGLDPTFVIG--GRLNSTASHSRL----------------GQG 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V+    S     H    ++ I    TN+  DH+  +Q       A    F   LP  
Sbjct: 162 AYLVAEADESDASFLH----LQPIIAVVTNIDADHLATYQGDFGRLRATFLEFLHHLPFY 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD- 299
             A++ A+D   +E+       G  VL+ G      +  + V A   +    I +  +D 
Sbjct: 218 GLAVLCAND---RELAGMIAEVGRPVLTYGIGVDADVTARNVRAEGTRTHFEICLPERDD 274

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGR 357
                  LPG   V NAL A  +   +G+D A + + L+K   +  RF+  G   +  G 
Sbjct: 275 TLAVTLNLPGRHNVLNALAAVAVAHELGVDDAAIQQGLDKFQGIGRRFQVYGELKTAAGT 334

Query: 358 IYV--DYAH 364
           + +  DY H
Sbjct: 335 VTLVDDYGH 343


>gi|162455913|ref|YP_001618280.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161166495|emb|CAN97800.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 495

 Score = 40.0 bits (92), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 117/303 (38%), Gaps = 35/303 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIG--PTSTISSFAQDNRLTTP 165
           L G+ P   L V GT GK++ +S    I   +G    F IG  P +  +SF      ++ 
Sbjct: 100 LAGRSP---LVVAGTHGKTTTSSMCAWILHEAGRDPGFLIGGLPKNFEASFRLPRSASSA 156

Query: 166 SPIYLAKALSYLSSQGV----THVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHI 217
           S     + L  L   G     T   VE   +         +    +   G  T++  DHI
Sbjct: 157 SD---RRGLPLLGEAGAGRRRTPFVVEGDEYDTAFFEKTPKFWHYQPEVGVVTSMEHDHI 213

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           D +    +Y  A  R F E +P+    +  A D    E++ R  +A   V     +G   
Sbjct: 214 DIYPDAASY-EAAFRGFVERIPETELVVAAAHDPRVVELVSR--SARAEVAWFALEGDDT 270

Query: 278 HLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCI-AIG 326
           H +    +    +   S  G+ FD          F   +PG   V NA+ A        G
Sbjct: 271 HGRPPHWLAAPAEAGES--GQSFDLYAGGVLAGRFALQMPGHHNVRNAIAAIAAAAQGFG 328

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385
           +  +     L     V  R + +   +RG R+Y D+AH   +++  L+ +R+   +G + 
Sbjct: 329 VPLSTATTALAGFAGVRRRQDLL-FEARGVRVYDDFAHHPTAVDETLRALRSRHPAGALW 387

Query: 386 VVF 388
            VF
Sbjct: 388 AVF 390


>gi|15642537|ref|NP_232170.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587894|ref|ZP_01677650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|153817994|ref|ZP_01970661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|153822958|ref|ZP_01975625.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229507403|ref|ZP_04396908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229509672|ref|ZP_04399153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229516797|ref|ZP_04406243.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229606910|ref|YP_002877558.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254851084|ref|ZP_05240434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262154693|ref|ZP_06028819.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
 gi|9657126|gb|AAF95683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547864|gb|EAX57949.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|126511429|gb|EAZ74023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|126519528|gb|EAZ76751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229345860|gb|EEO10832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229353146|gb|EEO18085.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229354908|gb|EEO19829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229369565|gb|ACQ59988.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254846789|gb|EET25203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262030533|gb|EEY49171.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
          Length = 451

 Score = 40.0 bits (92), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|332638190|ref|ZP_08417053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           cibaria KACC 11862]
          Length = 447

 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 114/284 (40%), Gaps = 44/284 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++GK++    +  + +    S  QI     I +   +   +      L   LS  
Sbjct: 106 IALTGSNGKTTTTEMIAAVLRTQATSDHQIVVAGNIGTPVSEVAPSLRDTDTLVTELSSF 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+     EA  +         I +I    TN+   H+DYH +++ Y  AKM + +  
Sbjct: 166 QLMGMP----EAKPN---------IAII----TNIFASHLDYHGSRENYVAAKMGITKNQ 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              +   I Y D A  +E+ ++       V  L     G + H  ++   +  + V  + 
Sbjct: 209 TADDYLVINY-DRAEWRELAQQTAATVVPVSRLDNSEDGAYEHDGQLY--YQGELVMAAA 265

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIG----IDSALVLEHLEKLHVVPGRFEFVGT 351
           E         +PG+  V NALVA    IA+G    + +  + E L +   V  R +FVGT
Sbjct: 266 E-------LGVPGDHNVENALVA----IAVGKLRHVPTNDIAEALRRFTGVEHRLQFVGT 314

Query: 352 NSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDR 394
              G ++Y D   T   + EM L           +V+   G DR
Sbjct: 315 FD-GRQVYNDSKATDIEATEMALSGFTA-----PVVLLAGGLDR 352


>gi|307265320|ref|ZP_07546877.1| FolC bifunctional protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919604|gb|EFN49821.1| FolC bifunctional protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 427

 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 164/449 (36%), Gaps = 135/449 (30%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L ++N R+ L+      Y  +P+    I+ V GT+GK S ++F+  I Q++G     +  
Sbjct: 20  LGLENIRRLLN------YMGNPQKNLKIIHVAGTNGKGSTSAFISNILQQAGYK-VALYT 72

Query: 150 TSTISSFAQDNRLT-------------------------------TPSPIYLAKALSYLS 178
           +  +  F +  R+                                T   +  A A  Y  
Sbjct: 73  SPYLEEFEERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFY 132

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            + V  V +E    G    R D    I  S  ++    IDY  T         RL   L 
Sbjct: 133 DEKVDFVVLEVGLGG----RFDATNAIDFSLVSVITT-IDYDHTD--------RLGHTL- 178

Query: 239 PKESPAIIYADDAYSKE-VMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHN-------KQ 289
                     + AY K  ++KR       V+S   Q + +  + + C + N       K 
Sbjct: 179 ---------GEIAYEKAGIIKR----NGVVVSFYQQPEALKVIIEACEVRNAYLTVLEKS 225

Query: 290 QVTISVEGKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            V I  +  DF         D    L GE Q+YNA              AL +E +EKL 
Sbjct: 226 NVIIKEQNPDFQIFDYKKYKDLKITLLGEHQIYNA--------------ALAIESVEKLK 271

Query: 341 VV------------------PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +                   PGR E +    +   + +D AH    + ++ ++++     
Sbjct: 272 MYGYEITEKDIREGLYRAKWPGRLEVM---RKKPYVVIDGAHNPQGMTVLKESLKLFKYD 328

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-----NPRSEDPEKIRAEIIHGIP 437
           ++I+V G   D+D  K   M  I +  A++ I T          SE  E+I  E +  I 
Sbjct: 329 KLILVIGMLKDKDTQK---MLDIIVPEANMIITTTPISERAYKASELAERIEKEKVIAIE 385

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 N  EA++ A+++  ++D+++  G
Sbjct: 386 ------NIEEAVKYALDIAKEEDMVLFCG 408


>gi|75765115|ref|ZP_00744396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74487397|gb|EAO51332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 337

 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 17/190 (8%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADDA   E+   A   G +
Sbjct: 71  AAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDY-SVINADDADVMEL--SADTKGQK 127

Query: 267 VL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +L S   + +     K  A++ K +  + V          LPG+  + N L A  +   +
Sbjct: 128 ILFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLPGQHNLENILAAMSIAKLL 181

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           G  +  +   L++   V  R E+V T N+R  + Y D    S +  M+          + 
Sbjct: 182 GTSNEAITVVLKRFTGVKHRLEYVTTINNR--KFYND----SKATNMLATEKALSAFTQP 235

Query: 385 IVVFGCGGDR 394
           IV+   G DR
Sbjct: 236 IVLLAGGLDR 245


>gi|325959935|ref|YP_004291401.1| Mur ligase middle domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331367|gb|ADZ10429.1| Mur ligase middle domain protein [Methanobacterium sp. AL-21]
          Length = 486

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 59/305 (19%), Positives = 116/305 (38%), Gaps = 53/305 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTGT+GKS+    +Q I   +G + +     +   S ++ N L  P            
Sbjct: 109 VVVTGTNGKSTTTHMIQNILNHAGYNCY-----TNTDSKSEFNTLIDPVVSDQISRFKAK 163

Query: 178 SSQGVTHVSVEASS--HGLDQHRLDGIKLIAGS-------FTNLGRDHIDY-HQTQQAYF 227
           + + +  + VE S     +D+   D   L+  +        TN+  DHI   +  ++ Y 
Sbjct: 164 TKKPIDAMVVEVSEVQGWMDKLMKDHAYLMTDAVKPDVLVLTNITMDHIGLINSIEETYA 223

Query: 228 N----------------AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
                            A +   + LL K +  I+      S   ++   N    V S G
Sbjct: 224 EIYGALAAVEKSCQNNYAVLNYDDPLLRKMAGEIVTCPSIISHGSVEPDFNPDLTVKSDG 283

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                        IH++ ++ + +E        P   +  + N + A G C+A+ ID++ 
Sbjct: 284 -------------IHHEDELFLKMED------LPFKSKHFLQNTMAAIGACLALNIDTSA 324

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   +     +  RF  +    +   I  D+AH  + +   +K+   ++ G +I++F   
Sbjct: 325 IKAGILSYSPLNRRFSIL---YQEPLIIDDFAHNPDGITATIKSASEMSEGTLIILFAVR 381

Query: 392 GDRDQ 396
           G R +
Sbjct: 382 GSRGE 386


>gi|307706011|ref|ZP_07642834.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK564]
 gi|307620430|gb|EFN99543.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK564]
          Length = 444

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G      ++         T+   G+D   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASELLRSTTGSTFTVHFRGQDLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|260576892|ref|ZP_05844875.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
 gi|259020929|gb|EEW24242.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
          Length = 479

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+  A + E L     V  RF  VG    G  I  DY 
Sbjct: 287 LPMPGDHNVSNALAAIAVARHLGMKKAEIREALAGFAGVNRRFTRVGV-VNGVTIIDDYG 345

Query: 364 HTSNSLEMILKNIRTITSG----RIIVV 387
           H    +  +L+  R  T+G    R+I V
Sbjct: 346 HHPVEIAAVLRAARQATAGTPGARVIAV 373


>gi|254478616|ref|ZP_05091989.1| FolC bifunctional protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035470|gb|EEB76171.1| FolC bifunctional protein [Carboxydibrachium pacificum DSM 12653]
          Length = 428

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 88/438 (20%), Positives = 166/438 (37%), Gaps = 96/438 (21%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L ++N R+ L       Y  +PE    I+ V GT+GK S +SF+  I + +G     +  
Sbjct: 20  LGLENIRRLLG------YIGNPEKNLKIIHVAGTNGKGSTSSFISSILKEAGYK-VALYT 72

Query: 150 TSTISSFAQDNRLT-------------------------------TPSPIYLAKALSYLS 178
           +  +  F +  ++                                T   +  A A  Y S
Sbjct: 73  SPYLEEFEERMKINGENISREKLVYYVEYIKPIIARMVREGYNHPTEFEVITAIAFKYFS 132

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF----TNLGRDHIDYHQTQQ---AYFNAKM 231
            + V  V +E    G    R D    I+ S     T++  DH+D         AY  A  
Sbjct: 133 DEEVDFVVLEVGLGG----RFDATNAISSSLVSVITSIDYDHMDKLGNTLGDIAYEKAG- 187

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                ++ K+   + +    Y +E   +  N  C V                 + +K  V
Sbjct: 188 -----IIKKKGVVVSF----YQQEEALKVINDACEVKEA-----------YLTVLDKSNV 227

Query: 292 TISVEGKDF---------DFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHV 341
            I  +  DF         D    L G  Q+YNA +A  +   +  I    + E   K  +
Sbjct: 228 VIKEQNSDFQVFDYKNFKDLKITLLGTHQIYNASLAVEVIQKLKNIYGYRIEEEAIKRGL 287

Query: 342 V----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +    PGR E +    +   + +D AH    + ++ ++++     R+I+V G   D++  
Sbjct: 288 MSAKWPGRLEVM---KKRPYVVIDGAHNPQGMTVLKESLKLFNYRRLILVIGMLKDKEVN 344

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           K   M  I   +AD+ I T   + R+   + + ++I       +++ ++  A+  A++M 
Sbjct: 345 K---MLNIITPVADVIITTTPLSDRAYSAKDLASKISRNSVFAVDQIDK--AVNEALKMA 399

Query: 457 NKQDVLVVAGKGHETVHI 474
            ++D+++  G  +   H+
Sbjct: 400 GEEDMVLFCGSLYMIGHV 417


>gi|152968673|ref|YP_001333782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330012009|ref|ZP_08307226.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
 gi|150953522|gb|ABR75552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328533998|gb|EGF60650.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
          Length = 438

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IIAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDTDRELYV-LELSSFQLETT--SSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAKTCVVNADDALTMPV----RGADERCISFGVDVGDYHLNR 242


>gi|227082660|ref|YP_002811211.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|298500631|ref|ZP_07010435.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
 gi|227010548|gb|ACP06760.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|297540800|gb|EFH76857.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|324112499|gb|EGC06476.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia
           fergusonii B253]
          Length = 438

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +    + LF      + P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGD----IELFCRE--AQAP--IVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L  +   +V +
Sbjct: 118 TVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALILLDDECELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|297539591|ref|YP_003675360.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
 gi|297258938|gb|ADI30783.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
          Length = 472

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 105/256 (41%), Gaps = 34/256 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S +  I   +G+  +F IG                   +  A A + 
Sbjct: 108 IAVAGTHGKTTTTSLIASILAEAGMDPTFVIG-----------------GKLEAANANAK 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L +    ++  EA         L  +  +    TN+ +DH+D ++       +    F +
Sbjct: 151 LGTG--EYIVAEADESDASFLHLTPVMAVV---TNIDQDHMDTYEHSFDKLKSAFVEFLQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS- 294
            LP    A++  DDA  +E++ R       V++ G+ +   +    V A   K   T   
Sbjct: 206 QLPFWGMAVVCIDDANIREILPRVTKP---VMTYGFSEDARVRAINVRADDGKMHFTAQR 262

Query: 295 VEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + G   +FD    LPG   V NAL A  +   + +  A +++ L++   V  RFE  G  
Sbjct: 263 INGVVTEFDVTLNLPGNHYVLNALAAIAIASELNVPDAAIIKALKEFKGVGRRFERYGEI 322

Query: 353 S-RGGRIYV---DYAH 364
           + +GG  +    DY H
Sbjct: 323 AVKGGGAFTLIDDYGH 338


>gi|119385135|ref|YP_916191.1| Mur ligase middle domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374902|gb|ABL70495.1| Mur ligase, middle domain protein [Paracoccus denitrificans PD1222]
          Length = 1020

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 119/298 (39%), Gaps = 55/298 (18%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +++AVTG++GK+S +  +                   +++ A+D ++   S      AL+
Sbjct: 658 HVVAVTGSAGKTSQSLML-------------------MAAMAKDRKVIGNS------ALN 692

Query: 176 YLSSQGVTH-----------VSVEASSHGLDQHRLDGIKLIA---GSFTNLGRDHIDYH- 220
           Y S  G+ H           V VEA+   ++  +   I+L+    G  TN+   H+    
Sbjct: 693 YNSRVGILHLLANTPPSTDLVVVEAAVTAINAPKFQNIRLMRPDIGLVTNIAPSHMQRSG 752

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           Q  +     K  L E + P  +  +    D Y    + RA      V++ G  G+   L+
Sbjct: 753 QGLETVARRKANLVEGIAPGGTLLLNREIDFYDV-FLDRAKQRDLCVVTFG-AGEDADLR 810

Query: 281 KVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            V       +V   + G    D+    PG     N+L   G+ + +G D A  LE LE+ 
Sbjct: 811 LVGYDQATGRVKARLPGGGLLDYRISAPGRHMAMNSLACIGVRLLLGGDLAPFLEGLEEF 870

Query: 340 HVVPG-----RFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-TSGRIIVVFG 389
               G     R EF G         VD ++ +N  S++  L     +  +GR I++ G
Sbjct: 871 QPAEGRGAVSRVEFEGCPL----TVVDDSYNANPVSMQAALSTFAGMKVAGRRILILG 924


>gi|261823018|ref|YP_003261124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium wasabiae WPP163]
 gi|261607031|gb|ACX89517.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           wasabiae WPP163]
          Length = 438

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 29/155 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A    L  P+ +Y+ +  S+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIGLPAL-QLLEQPAQLYVLELSSF 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S+ A+               A +  N+  DH + Y    Q Y  AK+R++E
Sbjct: 163 ---QLETTSSLHAA---------------AATILNVTEDHTNRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                    ++ ADDA +  +  R  +  CR   V
Sbjct: 205 H----ADLCVVNADDALTMPI--RGADVRCRSFGV 233


>gi|323488418|ref|ZP_08093665.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
 gi|323397925|gb|EGA90724.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
          Length = 437

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 103/286 (36%), Gaps = 64/286 (22%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG  GK+S    +  +       S+ IG  + +            S  ++A+A  Y 
Sbjct: 104 VAITGAHGKTSTTGLMAHVLGGYKPVSYLIGDGTGVGQ--------EDSHFFVAEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H    I       TN+  DH DY       F A    FEE+
Sbjct: 155 ------------RRHFLAYHPDYAI------MTNIDFDHPDYFTGIDDVFKA----FEEM 192

Query: 238 LPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTIS 294
             +    II   DD Y +++      A   V+  G+  +  F            + +  S
Sbjct: 193 AQQVKKCIIACGDDEYLQQI-----QAPTPVVYYGFGEENDF----------QARNIVKS 237

Query: 295 VEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           V+G  FD          F  P+ G+  + NAL    LC    I + ++ +  E    V  
Sbjct: 238 VDGTTFDVVIRNEFFHTFKLPMFGDHAILNALAVISLCHYESIPADIIQQQFEDFEGVKR 297

Query: 345 RFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVF 388
           RF      +   RI + DYAH    +   L++ R     R +I +F
Sbjct: 298 RFT---QTAIADRILIDDYAHHPTEIRATLQSARQKYPERELIAIF 340


>gi|254225932|ref|ZP_04919534.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
 gi|125621558|gb|EAZ49890.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|242238101|ref|YP_002986282.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya dadantii Ech703]
 gi|242130158|gb|ACS84460.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech703]
          Length = 486

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 116/293 (39%), Gaps = 57/293 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  + V  I   +GL  +F  G    + +     RL + S   +A+A   
Sbjct: 122 IAIAGTHGKTTTTAIVTSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADES 178

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D ++        G F NL +  I++      Y +A M 
Sbjct: 179 DASFLHLQPMVAIVTNIEADHMDTYQ--------GDFENLKQTFINFLHNLPFYGHAVMC 230

Query: 233 L----FEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           L      ELLP+    I    ++DDA  +    R          VG QG F         
Sbjct: 231 LDDPVIRELLPRVGRHITTYGFSDDADVRVADYR---------QVGAQGLF--------- 272

Query: 286 HNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                 T++ +GK   +     PG     NA  A  +    GI+   +L  LE+      
Sbjct: 273 ------TLARQGKPLLNVTLNAPGRHNALNAAAAVAVATEEGIEDDAILRALERFQGTGR 326

Query: 345 RFEFVG------TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           RF+F+G       N + G + +  DY H    ++  +K  R      R++++F
Sbjct: 327 RFDFLGEFPLEPVNGKSGAVMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIF 379


>gi|218249929|ref|YP_002375093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi ZS7]
 gi|226321891|ref|ZP_03797417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi Bol26]
 gi|226711886|sp|B7J2E8|MURD_BORBZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218165117|gb|ACK75178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi ZS7]
 gi|226233080|gb|EEH31833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi Bol26]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IVAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               Y   K ++F   + + S  +I  D AY K   K
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYCKYFSK 231


>gi|153215192|ref|ZP_01949873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|153825779|ref|ZP_01978446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
 gi|124114837|gb|EAY33657.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|149740502|gb|EDM54617.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 111/293 (37%), Gaps = 53/293 (18%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G    + +F    RL   S  ++ 
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVG--GVLGNFGISARLGE-SMFFVV 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y S+        +  S  +  H    +        NL  DH D     +A      
Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDNLEAI----K 201

Query: 232 RLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIH 286
           R F  L   +P     +    D    +V++R    GC   +   G QG++          
Sbjct: 202 RQFHHLVRTVPGNGRILAPKQDEALADVLQR----GCWSETEFSGEQGEW---------- 247

Query: 287 NKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             Q   I+ +G  F  L          + L G+  V NAL+A      +G+   L  E L
Sbjct: 248 --QAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEAL 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                   R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V 
Sbjct: 306 GLFVNTKRRLELKG-EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVL 357


>gi|147673270|ref|YP_001216473.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O395]
 gi|262167164|ref|ZP_06034877.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           RC27]
 gi|146315153|gb|ABQ19692.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O395]
 gi|227012818|gb|ACP09028.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O395]
 gi|262024385|gb|EEY43073.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           RC27]
          Length = 421

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 22/183 (12%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL+A G C  + I    +++ L    +  GR + +   S    I +D A
Sbjct: 254 LPLP---NAATALMALG-CSGLAISDINIVDGLRNAQLA-GRMQVI---SHQPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPR 421
           H  +S   +++ +      R I +VFG   D+D         IA  +A+ I  VT   P 
Sbjct: 306 HNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD---------IASTVAELIPAVTHWYPA 356

Query: 422 SEDPEK--IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           S    +    A++   +P  I +  N + A   A+     QDV+VVAG  H    ++ + 
Sbjct: 357 SLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDVIVVAGSFHTVGEVLEHW 416

Query: 479 EKK 481
           +K+
Sbjct: 417 QKR 419


>gi|260775365|ref|ZP_05884262.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608546|gb|EEX34711.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 486

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 113/285 (39%), Gaps = 46/285 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           +AV GT GK++  + V QI      S  ++ PT      + S   + RL + S I +A+A
Sbjct: 125 IAVAGTHGKTTTTALVTQI-----YSEAELDPTFVNGGLVKSAGTNARLGS-SRILIAEA 178

Query: 174 ----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S+L  Q +  +     +  +D +         G F  L +  ID+          
Sbjct: 179 DESDASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHN------- 223

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
                   LP    AI+  DD   +E++ R      +V++ G+ +   + ++  C    +
Sbjct: 224 --------LPFYGQAIVCIDDPVVRELIPRISR---QVITYGFAEDADVRIENYCQEGQQ 272

Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            + T+  +G+ + D    +PG     NA  A  +     ID   +L  +        RFE
Sbjct: 273 GKFTVVRQGRANLDITLNIPGRHNALNAAAAIAVATEDDIDDESILRAMAGTQGTGRRFE 332

Query: 348 FVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +G   T +    +  DY H    +++ +   R      R++++F
Sbjct: 333 HLGEFDTGNGSAMLVDDYGHHPTEVDVTIHAARNGWQDKRLVMIF 377


>gi|167464919|ref|ZP_02330008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384122|ref|ZP_08057840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151202|gb|EFX44511.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 463

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 36/242 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175
           I+ +TG++GK++  + V ++ + + LS    G                     + +ALS 
Sbjct: 114 IIGITGSNGKTTTTTLVGKMLEEAELSPVVAG--------------------NIGRALSE 153

Query: 176 -YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +     + VE SS  L +   D    IA    N+   H+DYH + + Y  +K +LF
Sbjct: 154 AALDANETDRLVVELSSFQL-KGTTDFRPHIA-CLLNVYETHLDYHGSMEDYVASKAKLF 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +E  A+I  DD   + ++     AG    S+  +     L     +   Q++  +
Sbjct: 212 ANQT-QEDTAVINWDDPVCRSLVPTI-KAGLMPFSMKEK-----LLPGVYLDEHQKIVFT 264

Query: 295 VEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   + P     + G   + NAL A+ + +  G++ + +   L+    V  R E+V
Sbjct: 265 DRSGATHTILPAKELGIRGSHNIENALAASAIALCAGVNISNIAGVLKLFRGVEHRLEYV 324

Query: 350 GT 351
           GT
Sbjct: 325 GT 326


>gi|50122736|ref|YP_051903.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|59798236|sp|Q6D0I4|MURC_ERWCT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49613262|emb|CAG76713.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 486

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 133/342 (38%), Gaps = 62/342 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+        L   R +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRAEMLAELMRFR-HG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  + V  I   +GL  +F  G    + +     RL + S   +A+A     S+L  Q +
Sbjct: 132 TTTAMVTSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADESDASFLHLQPM 188

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELL 238
             +     +  +D ++        G F NL +  I++      Y  A M     +  ELL
Sbjct: 189 VAIVTNIEADHMDTYQ--------GDFENLKQTFINFLHNLPFYGQAVMCIDDAVIRELL 240

Query: 239 PKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           P+    I    ++DDA  +        AG R    G QG F   +K   + N   VT++ 
Sbjct: 241 PRVGRHITTYGFSDDADVRV-------AGYR--QTGAQGHFTLERKDKTLLN---VTLNA 288

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----- 350
                      PG     NA  A  +    GID   +L  LE+      RF+F+G     
Sbjct: 289 -----------PGRHNALNAAAAVAVATDEGIDDEAILRALERFQGTSRRFDFLGEYPLE 337

Query: 351 -TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             N + G   +  DY H    ++  +K  R      R++++F
Sbjct: 338 LVNGQSGTAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIF 379


>gi|126172967|ref|YP_001049116.1| UDP-N-acetylmuramate [Shewanella baltica OS155]
 gi|125996172|gb|ABN60247.1| UDP-N-acetylmuramate [Shewanella baltica OS155]
          Length = 463

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 118/291 (40%), Gaps = 47/291 (16%)

Query: 114 PEN-ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           PE  +LAV+GT GK+S +S +  I    G    F IG      +F    RL   +  ++ 
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIG--GVPQNFGVSARLGK-TAFFVV 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ---TQQAYFN 228
           +A  Y S+        +  S  +  H    +        NL  DH D        Q  FN
Sbjct: 161 EADEYDSA------FFDKRSKFVHYHPRTLV------INNLEFDHADIFADLAAIQKQFN 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV---------LSVGYQGKFIHL 279
             +R     +P E   I++  D+++   +K+  + GC            + G+ GK   L
Sbjct: 209 HLVRT----VPGEG-KIVWPADSHA---VKQTIDMGCWSEQETYHLAESANGWYGK--AL 258

Query: 280 KKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              C      +  +  +G+    L + L G+  + NA++A      +G+  +  +E L K
Sbjct: 259 SDDC-----HRFEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAK 313

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                 R E +GT   G  +Y D+AH   ++   LK +R  +   +I VV 
Sbjct: 314 FMPPKRRLELLGT-VNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVL 363


>gi|229820900|ref|YP_002882426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
 gi|229566813|gb|ACQ80664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
          Length = 474

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 112/297 (37%), Gaps = 53/297 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR   AG +FVA+ G   DGH ++  A   GA   +V+         A +       +V
Sbjct: 33  DSREATAGSLFVALPGEHVDGHAYVRVAHENGATTSLVTRLVPDAGDGAQV-------LV 85

Query: 96  DNTRKFLSLFASRLYGK------HPENILAVTGTSGKSSVASFVQQICQRSGLS------ 143
           D+ ++ L   A  +  +       P  ++ +TG+ GK+S    + ++    G+       
Sbjct: 86  DDAQRALGDLARHVLARRREVADEPPVVVGITGSVGKTSTKDLLAEVLAPLGVVHAPPGS 145

Query: 144 -SFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            + ++G   T+    QD R+        A   L+YL+S     V+V              
Sbjct: 146 LNNELGLPLTVLRAPQDARVVVAEMGADAPGNLTYLTSIAPPDVAV-------------- 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                     +GR H+    +  A    K  L   L P    A++ ADD     + + A 
Sbjct: 192 -------VLTVGRAHLAGFGSVDAVAATKSELVSGLAPGGF-AVLNADDERVAAMARLA- 242

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317
               RV++ G  G  +    V A    + VT+   G+  F    P   E  V  ALV
Sbjct: 243 ---PRVVTFG-SGDAVPPPSVGA----RDVTLDAAGRAAFVLTTPDGEEVPVTLALV 291


>gi|172040887|ref|YP_001800601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium urealyticum DSM 7109]
 gi|226711902|sp|B1VHC6|MURD_CORU7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|171852191|emb|CAQ05167.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 493

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 129/351 (36%), Gaps = 74/351 (21%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +A+TGT+GK++  +    + Q  GL++  +G             + TP        
Sbjct: 117 PRTWIAITGTNGKTTATAMTTAMLQAGGLAAVSVG------------NIGTP------PG 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + ++ +   ++  E SS  L  H         G   NL  DH+D+H +   Y   K+R 
Sbjct: 159 AALVADERADYLVAEVSSFQL--HWAPSFTPDTGVVLNLAEDHLDWHGSMAGYAGDKLRA 216

Query: 234 F---------EELLPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
                     +E L +E       P ++        EV+ +AH     V  V  +   + 
Sbjct: 217 LRGPRPVVAVDEQLVRELAADNGVPNVVACSMQDPAEVLAQAHFP-LVVGVVESEAGAVI 275

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +   A + + QVT     +        PG   + +A+ A  L  A  +    + + L  
Sbjct: 276 TEVATAENGELQVTPIASAEAIS----PPGPAGIADAVAACALVRAFDVPPVAISQALHG 331

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITSGRI--------- 384
             V   R + V  +   G I++D +  +N    I     L+NI  +  G++         
Sbjct: 332 FEVQAHRGQAV--HLAEGVIWIDNSKATNPHAAIAALGGLENIVWVAGGQLKGAEVHDLI 389

Query: 385 ---------IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
                     VV GC  DR +    I+ ++A    D+ +    N    DPE
Sbjct: 390 ATVGPGLRGAVVLGC--DRAE----IIRELAAQFPDLPVTEVSN---TDPE 431


>gi|216264830|ref|ZP_03436822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 156a]
 gi|221218094|ref|ZP_03589560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 72a]
 gi|223888943|ref|ZP_03623534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 64b]
 gi|224533660|ref|ZP_03674249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi CA-11.2a]
 gi|225549611|ref|ZP_03770577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 118a]
 gi|215981303|gb|EEC22110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 156a]
 gi|221192042|gb|EEE18263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 72a]
 gi|223885759|gb|EEF56858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 64b]
 gi|224513333|gb|EEF83695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi CA-11.2a]
 gi|225369888|gb|EEG99335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 118a]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IVAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               Y   K ++F   + + S  +I  D AY K   K
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYCKYFSK 231


>gi|325198902|gb|ADY94358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis G2136]
          Length = 436

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M    + ++ + +DSR I+AG +F A+ G + D H F+   +A        +   S +D 
Sbjct: 1   MPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAAAVVVSREDC 56

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            A   +    L VD+T   L + A          +  +TG+ GK++V   +  + +R
Sbjct: 57  VAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRR 109


>gi|15594930|ref|NP_212719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi B31]
 gi|3914074|sp|O51532|MURD_BORBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2688512|gb|AAB91522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi B31]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IVAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               Y   K ++F   + + S  +I  D AY K   K
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYCKYFSK 231


>gi|325962945|ref|YP_004240851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469032|gb|ADX72717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 488

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 105/291 (36%), Gaps = 54/291 (18%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           V +DSR    G ++VA  G   DGH F+  A A GA   +V       D        TP 
Sbjct: 28  VVTDSREATQGSLYVAKPGENADGHDFVGSAFAAGATLALVEHPVLSPD-------GTPY 80

Query: 92  --ILVVDNTRKFLSLFAS---RLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSG 141
             +LV D       L A    R+     E      ++ +TG++GK++    +  I    G
Sbjct: 81  PSVLVPDAVLAMGKLAAESVRRIRAARAETNDELTVIGITGSAGKTTTKDLLAGILSAHG 140

Query: 142 LS-------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +       + +IG   T+ +   D R       YL   +  + + G+ H+S        
Sbjct: 141 TTVAPKGSYNGEIGVPLTVFTAGTDTR-------YL---VIEMGATGIGHIS-------- 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             + +D +K   G    +G  H       +    AK  L E L    + AII  DD    
Sbjct: 183 --YLVDMVKPDIGVVLAVGTAHAGEFGGVENIAQAKGELVEGLAASGT-AIINLDDERVA 239

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            +  R       VL    +G     +   A+      T +    +FD L P
Sbjct: 240 AMQARTS---ASVLGFTAEG-----RPGAAVQALNADTNAEGNPEFDLLLP 282


>gi|323343902|ref|ZP_08084129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
 gi|323095721|gb|EFZ38295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
          Length = 436

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 178/461 (38%), Gaps = 65/461 (14%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNT 90
           ++++DSR      IF+A+ G   DG+ F   A+ +G A AIV    Y   D S  I    
Sbjct: 16  QITTDSRICPKDSIFIALRGENFDGNKFAETALEKGCAYAIVDEQKYQKPDDSRYI---- 71

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
              +VDN  K     A     +    I+ +TGT+GK++    V  +  +      +    
Sbjct: 72  ---LVDNCLKTYQQLAREHRRRFHIPIIGITGTNGKTTTKELVSAVLGK------KYSVL 122

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            T  +F  D        + + K L  LS +  +  + + AS  G  +  ++ ++   G  
Sbjct: 123 HTDGNFNND--------VGVPKTLFRLSEKHQIAVIEMGASHRGDIKTLVEIVEPDYGII 174

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKRAHNAGCRV 267
           TN+G+ H+    + +     K  L++ L  K+  +   I AD+ Y   + +     G  +
Sbjct: 175 TNVGKAHLQGFGSFEGVIRTKGELYDYLRAKQGGNKVFINADNPYLMNISQ-----GLTL 229

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-----------LPGEFQVYNAL 316
           +  G +         C +  K +VT      DF +              + G + + N L
Sbjct: 230 IKYGKRDD-------CELSVKGEVTGCSPFLDFRWYNTQAGHWNEVHTRMIGAYNIDNML 282

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            AA + +  GI  A + E L K      R +   TN    ++ VD Y     S+   ++N
Sbjct: 283 AAACIGLHFGISEADIDEALSKYTPSNNRSQLTVTNDN--KLIVDAYNANPTSMHAAIEN 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDPEKIRAEII 433
            + +     I + G   +     +    +IA  L  AD            D   +  E  
Sbjct: 341 FKAMHVSPKIAILGDMRELGNASKEEHQRIADELKTADF-----------DNVWLVGEEF 389

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       K + IE ++TA++  NK     +  KG   +H+
Sbjct: 390 YNTKSGFRKFHNIEEVKTALQT-NKPKGCYILIKGSNGLHL 429


>gi|307706220|ref|ZP_07643037.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK321]
 gi|307618410|gb|EFN97560.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK321]
          Length = 444

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + IY +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFIYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G+D   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAKGNDFVASDLLRSTTGSTFTVHFRGQDLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|150009088|ref|YP_001303831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937512|gb|ABR44209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
          Length = 445

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 111/290 (38%), Gaps = 48/290 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++       I + +G+    +G    + +         P  +Y+      
Sbjct: 105 MICITGSNGKTTTTMLTYHILKEAGV---DVGLAGNVGNSLALQVAEDPHAVYV------ 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   K       N+  DH+D Y+   Q Y +AK R+ +
Sbjct: 156 ----------IELSSFQLDN--MYDFKADIAIILNITPDHLDRYNYEMQNYVDAKFRILQ 203

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               K+   I + DD   ++E+ KR   A        Y     H   +       QV I 
Sbjct: 204 N-QTKDDAFIFWNDDPIIAREIAKRHPEATL------YPFAETHENGMKGYTENNQVVIE 256

Query: 295 VEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                F     L  L G   +YN+L       A GI S +V  H EK+       +F G 
Sbjct: 257 TANGTFTMEQDLLALTGTHNLYNSL-------ASGIASKIVDIHDEKIRASLS--DFTGV 307

Query: 352 NSRGGRIY----VDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCGGDRD 395
             R  ++     VDY + S +  +      ++++T+  ++++ G     D
Sbjct: 308 EHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTTPVVLILGGTDKGND 357


>gi|325132962|gb|EGC55639.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M6190]
          Length = 436

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M    + ++ + +DSR I+AG +F A+ G + D H F+   +A        +   S +D 
Sbjct: 1   MPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAAAVVVSREDC 56

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           +A   +    L VD+T   L   A          +  +TG+ GK++V   +  + +R
Sbjct: 57  AAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRR 109


>gi|268679675|ref|YP_003304106.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617706|gb|ACZ12071.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 476

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 134/305 (43%), Gaps = 40/305 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKAL 174
           ++A+T + GK+S+ +F+  I  +           +T++   +D  N L     IY+ +A 
Sbjct: 157 VIAITASYGKTSIKNFLASILSKEFNVYHTPRSVNTLAGIVKDINNDLPDTCDIYIVEAG 216

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +  QG     ++  +  ++ H    I ++      +G  HI+Y +T +   N KM + 
Sbjct: 217 ARM--QG----DIDEIARCVNPH----IAVVG----RIGEQHIEYFKTLENIRNTKMEMI 262

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +   A I+ + A  KE           +LS G +     +K+V A  +    ++ 
Sbjct: 263 HS--NRLQKAFIH-ESAQIKET--------PTILSFGSE-----IKEVKASLDGLTFSML 306

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +EGK+  F   L G+F   N      +   +G+   ++ E + +L  V  R + +     
Sbjct: 307 LEGKEEHFSASLLGDFNAINLAACVHVARELGMSIEMIQEAMRELKGVEHRLQKI---EA 363

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT--SGR-IIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           GG+I +D +   N LE +L +   ++   GR +IV  G     ++  + +  KI   + D
Sbjct: 364 GGKIIIDDSFNGN-LEGMLSSYELVSHYEGRKVIVTPGIVESTEEANKCLAEKID-AIFD 421

Query: 412 IAIVT 416
           + I+T
Sbjct: 422 VVIIT 426


>gi|198471897|ref|XP_002133294.1| GA28065 [Drosophila pseudoobscura pseudoobscura]
 gi|198139515|gb|EDY70696.1| GA28065 [Drosophila pseudoobscura pseudoobscura]
          Length = 199

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            ++A W+F A++   +DG+  IP       E++V+   +  +D++  +      L+VD  
Sbjct: 73  RVKANWMFSAVLDESDDGNYIIPN-----TESVVLGGTHQERDYNTRVCEKDKKLIVDGC 127

Query: 99  RKFL 102
           R+F+
Sbjct: 128 RQFV 131


>gi|307132582|ref|YP_003884598.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
 gi|306530111|gb|ADN00042.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
          Length = 486

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 150/417 (35%), Gaps = 83/417 (19%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG----- 67
           EL    SI P   R R I+ V      +      +A  G +  G    P A+ Q      
Sbjct: 5   ELAKLRSIVPEMHRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNAVTQQLIDLG 64

Query: 68  --------------AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
                         A  +VVSSA +  +          I V+        L   R +G  
Sbjct: 65  ARIYFHHRPENVNEASVVVVSSAIAADNPEIIAAHEARIPVIRRAEMLAELMRFR-HG-- 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  + V  I   +GL  +F  G    + +     RL + S   +A+
Sbjct: 122 ----IAVAGTHGKTTTTAMVTSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAE 174

Query: 173 A----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           A     S+L  Q +  +     +  +D ++        G F NL +  I++      Y +
Sbjct: 175 ADESDASFLHLQPMVAIVTNIEADHMDTYQ--------GDFENLKQTFINFLHNLPFYGH 226

Query: 229 AKMRL----FEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           A M L      ELLPK    I    ++DDA  +    R          VG QG F     
Sbjct: 227 AVMCLDDAVIRELLPKVGRHITTYGFSDDADVRLADYR---------QVGAQGLF----- 272

Query: 282 VCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                     T++ +GK   +     PG     NA  A  +    GID   +L  L +  
Sbjct: 273 ----------TLARQGKPLLNVTLNAPGRHNALNAAAAVAVATEQGIDDDAILRALARFQ 322

Query: 341 VVPGRFEFVG------TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               RF+F+G       N + G   +  DY H    ++  +K  R      R++++F
Sbjct: 323 GTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIF 379


>gi|257870256|ref|ZP_05649909.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
 gi|257804420|gb|EEV33242.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
          Length = 458

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 13/166 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   H+DYH  +  Y  AK RL + +  ++   I +       E+++ +     +V+ 
Sbjct: 189 TNIYEAHLDYHGNRSEYVRAKWRLQQNMTAEDFLVINWN----QPELVELSQQTKAKVIP 244

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              Q K        A   ++Q+    E         +PG   V NAL A  +    GI +
Sbjct: 245 FSTQQKV-----AGAYLFEEQLYFKDEAIMPVSELGVPGSHNVENALAAIAVAKLEGIAN 299

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL--EMIL 373
             +++ L     VP R ++V T   G R + D +  +NSL  EM L
Sbjct: 300 EAIVQALHTFSGVPHRTQYVDT-IEGVRFFND-SKATNSLATEMAL 343


>gi|227538303|ref|ZP_03968352.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241818|gb|EEI91833.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 452

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           EGK  D    +PG   V NA+ A      +GI  A ++  L     V  RFE++  N + 
Sbjct: 262 EGKISDIHLGIPGIHNVENAVAAITAARLLGIADAKIVTALSTFKGVKRRFEYIVRNPQ- 320

Query: 356 GRIYV-DYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
             IY+ DYAH    L   + ++R +  + ++ VVF
Sbjct: 321 -TIYIDDYAHHPEELRAFISSMRKLYPTKKLTVVF 354


>gi|205374471|ref|ZP_03227267.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus coahuilensis m4-4]
          Length = 439

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 121/347 (34%), Gaps = 66/347 (19%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-RSNTPILVVDNTRKFLSLFASRLYG 111
           +E G   +P       E + V +  +  D    I R+    L V    KFL  F  +   
Sbjct: 44  EESGITILPFNADNIKEGLTVIAGNAFSDNHEEIERAKELGLPVIRYHKFLGEFMKKFTS 103

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AVTG  GK+S    +  +      +S+ IG  +         + T  S  ++ 
Sbjct: 104 ------VAVTGAHGKTSTTGLLAHVISGDKPTSYLIGDGT--------GKGTEDSQYFVF 149

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y               H L  H    I       TN+  DH DY    +  F+A  
Sbjct: 150 EACEY-------------RRHFLSYHPDYAI------MTNIDFDHPDYFADVEDVFSA-- 188

Query: 232 RLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             F+E+  + +  II   DD + + +  +           G +  F            + 
Sbjct: 189 --FQEMALQVNKGIIACGDDEHLQSIQTKV---PVVFYGFGEENDF----------QARN 233

Query: 291 VTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +T+   G  FD          F     G+  V NAL    LC    ID+A+V E L    
Sbjct: 234 ITVDENGTTFDVFVRNTFYASFTISTYGKHNVLNALGVIALCHYENIDTAVVQERLRTHK 293

Query: 341 VVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIV 386
            V  RF       +G ++ + DYAH    +   + + R     R IV
Sbjct: 294 GVKRRFT---EKVKGSQVIIDDYAHHPTEINATIDSARQKYPNREIV 337


>gi|189485641|ref|YP_001956582.1| UDP-N-acetylmuramate-L-alanine ligase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|229620440|sp|B1GYM8|MURC_UNCTG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170287600|dbj|BAG14121.1| UDP-N-acetylmuramate-L-alanine ligase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 7/181 (3%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+DY+ + +    A ++     +P    AII +D+   ++++ +      R ++
Sbjct: 179 TNIDNDHLDYYDSMENLKEAFVKHIN-CIPFYGTAIICSDNEVVRKIIPQITR---RYIT 234

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G  G   I    +  + N     +  +  K       + G+  V N+L A G+ + +GI
Sbjct: 235 YGLMGNPDIKASNIKVLKNHTSFDVFYMRKKVGSVCMKILGKHNVSNSLAAIGVGLRLGI 294

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             + + + + K   V  R E  G  + G  +  DY H    +   L+ I+     R +VV
Sbjct: 295 SFSSIADTINKFDGVSRRLEIKGEKN-GMMVIDDYGHHPTEVAATLRAIKLFWPERRLVV 353

Query: 388 F 388
            
Sbjct: 354 L 354


>gi|54295453|ref|YP_127868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Lens]
 gi|62900487|sp|Q5WTI5|MURD_LEGPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53755285|emb|CAH16779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Lens]
          Length = 447

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+V + V ++ + +G   F++     I          TP        L  
Sbjct: 107 VIAITGTNGKSTVTTLVGEMAKAAG---FRVAVAGNIG---------TP-------VLDM 147

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L  +    + V E SS  LD      +  +  +  N+  DH+D H T +AY  AK R++
Sbjct: 148 LDDEHHYDLWVLELSSFQLDLTY--SLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIY 204


>gi|54310302|ref|YP_131322.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           SS9]
 gi|59798288|sp|Q6LMF7|MURC_PHOPR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46914743|emb|CAG21520.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
          Length = 487

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 132/340 (38%), Gaps = 59/340 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  +VVS+A +  +          I VV        L   R +G      +A+ GT G
Sbjct: 81  NGASVVVVSTAIAQDNPELVAARELRIPVVRRAEMLAELMRYR-HG------IAIAGTHG 133

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  + + QI   +GL  +F  G    + S   + RL   S   +A+A     S+L  Q
Sbjct: 134 KTTTTALMTQIYFEAGLDPTFVNG--GLVKSAGTNARLGC-SRYLIAEADESDASFLHLQ 190

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEE 236
            +  V     +  +D +         G F  L +  ID+      Y  A M     +  E
Sbjct: 191 PMVSVVTNIEADHMDTY--------GGDFEVLKQTFIDFLHNLPFYGLAVMCVDDPVVRE 242

Query: 237 LLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           LLP+    II   ++DDA  + V    H          +QG F               TI
Sbjct: 243 LLPRIGRQIITYGFSDDADVRIVEYGQH---------AHQGHF---------------TI 278

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              GK D +    +PG+    NA  A  +    G+D   ++  L +      RF+ +G  
Sbjct: 279 LRAGKPDLNVKLNIPGKHNALNATAAVAVATEEGVDDDAIIRALLEFEGTGRRFDHLGEF 338

Query: 353 SRG-GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             G G + +  DY H  + +++ ++  R      R++++F
Sbjct: 339 ETGNGSVMLVDDYGHHPSEVDVTIQAARAGWEKKRLVMIF 378


>gi|320093977|ref|ZP_08025804.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319979083|gb|EFW10599.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 484

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 22/118 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L VTGT+GK++    + +I + SG  + ++G   T  + A D+                 
Sbjct: 121 LCVTGTNGKTTTVGMLGEILRASGADAAEVGNIGTPITRAIDSAAEV------------- 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   +VE SS  L  H    +  +A    N+  DH+D+H + +AY   K R+++
Sbjct: 168 -------FAVELSSFQL--HTAHSVSPLASICLNVDADHLDWHGSAEAYAVDKARVYQ 216


>gi|284030818|ref|YP_003380749.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
 gi|283810111|gb|ADB31950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
          Length = 479

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 31/169 (18%)

Query: 105 FASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
            A RL  + P N    L VTGT+GK++    +  +   +G                  +R
Sbjct: 111 LAWRL--RDPANAAPWLCVTGTNGKTTTVQMLTAMLTAAG------------------HR 150

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 + L    + +  +    ++VE SS+ L  H    +   + +  NL  DH+D+H 
Sbjct: 151 AVAAGNVGLPLLEAVMDPEPYDVIAVELSSYQL--HFTHSMSAHSAAVLNLAPDHVDWHG 208

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268
           + +AY   K R+FE        A +Y  AD A  K V +     GCR +
Sbjct: 209 SLEAYAADKGRIFENC----QVACVYNVADAATEKLVEQADVVEGCRAI 253


>gi|224372973|ref|YP_002607345.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
 gi|223589775|gb|ACM93511.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
          Length = 470

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 136/326 (41%), Gaps = 52/326 (15%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISS 155
           K+  L   +L    P+ I+A+T + GK+S+ +F+ Q+ +     +F++  T    +T+  
Sbjct: 138 KYKKLAKEKLTKIDPK-IVAITASYGKTSIKNFLYQLLE----GTFKVYKTPRSVNTLKG 192

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR- 214
             +D  +  P  I +     Y++  G       A   G     L+ ++ +   ++ LG+ 
Sbjct: 193 IIKDINVDMPENIEI-----YIAEAG-------AREKG---DILEIVEFLENEYSILGKI 237

Query: 215 --DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              HI+Y +T       K+ +F      ++P +      +S EV    +N    V+    
Sbjct: 238 GPQHIEYFKTLDNIKQTKLEIF------KTPKL---KKGFSYEV---PYNEKVLVIKN-- 283

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 +K + A  N  +  + +  +   F   L G F   N  +A    +  G+    +
Sbjct: 284 -----KIKNIKASLNGIEWEVEINDRIHKFECKLLGGFNAVNVTLAIFQALEFGLSVEEL 338

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFGC 390
            + + KL  +P R + +     GG+I +D +   N   MI   + ++     +I+V  G 
Sbjct: 339 KQKVLKLESIPHRLQKIEV---GGKIIIDDSFNGNLEGMIESYELVKEYKGKKILVTPGI 395

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT 416
               D+  + +  KI  ++ D+ I+T
Sbjct: 396 VEATDEQNKQLAKKID-EVFDLVILT 420


>gi|293510628|ref|ZP_06669333.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M809]
 gi|291466519|gb|EFF09040.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 437

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGVG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+ +   I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKESDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|50122739|ref|YP_051906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium atrosepticum SCRI1043]
 gi|60390382|sp|Q6D0I1|MURD_ERWCT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49613265|emb|CAG76716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 438

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 29/155 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   +Q+G    I   A    L  P+ +Y+ +  S+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIGLPAL-QLLEHPAQLYVLELSSF 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S+ A+               A +  N+  DH + Y    Q Y  AK+ ++E
Sbjct: 163 ---QLETTTSLHAA---------------AATILNVTEDHTNRYPFGLQQYRAAKLHIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                    ++ ADDA +  V  R  +A CR   V
Sbjct: 205 H----ADLCVVNADDALTMPV--RGADARCRSFGV 233


>gi|121728122|ref|ZP_01681158.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           V52]
 gi|121629590|gb|EAX62012.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           V52]
          Length = 421

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 22/183 (12%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL+A G C  + I    +++ L    +  GR + +   S    I +D A
Sbjct: 254 LPLP---NAATALMALG-CSGLAISDINIVDGLRNAQLA-GRMQVI---SHQPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPR 421
           H  +S   +++ +      R I +VFG   D+D         IA  +A+ I  VT   P 
Sbjct: 306 HNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD---------IASTVAELIPAVTHWYPA 356

Query: 422 SEDPEK--IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           S    +    A++   +P  I +  N + A   A+     QDV+VVAG  H    ++ + 
Sbjct: 357 SLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDVIVVAGSFHTVGEVLEHW 416

Query: 479 EKK 481
           +K+
Sbjct: 417 QKR 419


>gi|325276639|ref|ZP_08142373.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas sp. TJI-51]
 gi|324098224|gb|EGB96336.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas sp. TJI-51]
          Length = 449

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 107/274 (39%), Gaps = 46/274 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++ +S +  + + +G+S  F IG      +F+   RL   +P ++ +A  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIG--GVPQNFSVSARLGA-TPFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    I        NL  DH D      A    +     
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTAI------LNNLEFDHADIF-PDLASIERQFHHLV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +P E   I       +++ ++R    GC   V + G  G++            Q   +
Sbjct: 209 RTIPSEGLVI----HPTTEQALERVIGMGCWTPVHTTGEGGQW------------QARLL 252

Query: 294 SVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           S +G  F+ LF           L G+  V NAL        +G+  A+ +E L     V 
Sbjct: 253 SADGSRFEVLFEGQAQGVVDWALTGQHNVANALATLAAARHVGVVPAMGIEGLCAFKSVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            R E V    +G  IY D+AH   ++   L  +R
Sbjct: 313 RRMEKV-AEVQGVTIYDDFAHHPTAIATTLDGLR 345


>gi|307611494|emb|CBX01167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 130b]
          Length = 447

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+V + V ++ + +G   F++     I          TP        L  
Sbjct: 107 VIAITGTNGKSTVTTLVGEMAKAAG---FRVAVAGNIG---------TP-------VLDM 147

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L  +    + V E SS  LD      +  +  +  N+  DH+D H T +AY  AK R++
Sbjct: 148 LDDEHHYDLWVLELSSFQLDLTY--SLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIY 204


>gi|298369640|ref|ZP_06980957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282197|gb|EFI23685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 455

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            I Q    P     + ++ + +DSR I AG +F A+ G + D H F+   +A        
Sbjct: 8   FICQTLNLPTPSENKPVSRIVTDSRDICAGDVFFALAGERFDAHDFVEDVLAA----GAA 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +   S +D +A   +    L VD+T   L   A          +  +TG+ GK++V   +
Sbjct: 64  AVVVSHEDCAALDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119

Query: 134 QQICQR 139
             + +R
Sbjct: 120 AAVLRR 125


>gi|313496921|gb|ADR58287.1| UDP-N-acetylmuramate [Pseudomonas putida BIRD-1]
          Length = 449

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 107/274 (39%), Gaps = 46/274 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++ +S +  + + +G+S  F IG      +F+   RL   +P ++ +A  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIG--GVPQNFSVSARLGD-TPFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    I        NL  DH D      A    +     
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTAI------LNNLEFDHADIF-PDLASIERQFHHLV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +P E   I       +++ ++R    GC   V + G  G++            Q   +
Sbjct: 209 RTIPGEGLVI----HPTTEQALERVIGMGCWTPVQTTGEGGQW------------QARLL 252

Query: 294 SVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           S +G  F+ LF           L G+  V NAL        +G+  A+ +E L     V 
Sbjct: 253 SPDGSRFEVLFEGEVQGVVDWALTGQHNVANALATLAAARHVGVVPAMGIEGLSAFKSVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            R E V    +G  IY D+AH   ++   L  +R
Sbjct: 313 RRMEKV-AEVQGVTIYDDFAHHPTAIATTLDGLR 345


>gi|238918679|ref|YP_002932193.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella ictaluri
           93-146]
 gi|238868247|gb|ACR67958.1| UDP-N-acetylmuramate--alanine ligase, putative [Edwardsiella
           ictaluri 93-146]
          Length = 491

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 118/298 (39%), Gaps = 67/298 (22%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  + V  I   +GL  +F  G    + +     RL + S   +A+A   
Sbjct: 126 IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADES 182

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +                  H D+   +Q + N    
Sbjct: 183 DASFLHLQPMVAIVTNIEADHMDTY------------------HGDFENLKQTFIN---- 220

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR----------AHNAGCRV---LSVGYQGKFIHL 279
            F   LP    A++  DD   +E++ R          + +A  R+      G QG F   
Sbjct: 221 -FLHNLPFYGRAVLCIDDPVIRELLPRVGRQVTTYGFSQDADVRIEEYRQCGAQGTFFLC 279

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++     ++ ++ +++           PG     NA  AA +    GID   +L  L++ 
Sbjct: 280 RQ-----DRPRLAVTLNA---------PGRHNALNAAAAAAVASEEGIDDEAILRALDRF 325

Query: 340 HVVPGRFEFVG------TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                RF+F+G       N+R GR+ +  DY H    ++  +K  R      R+++VF
Sbjct: 326 QGTGRRFDFLGEFSLQHVNNRPGRVMLVDDYGHHPTEVDATIKAARAGWPDRRLVMVF 383


>gi|260886503|ref|ZP_05897766.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|330839653|ref|YP_004414233.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|260863646|gb|EEX78146.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747417|gb|AEC00774.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
          Length = 457

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 13/184 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ T  A      R F E +     A++  D+   +++   A   G +V+S
Sbjct: 179 TNIEDDHLDHYGTL-ANIRKAFREFLENIKPGGHAVLCFDNENVRDI---AQTLGRKVIS 234

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFL-FPLPGEFQVYNALVAAGLCIAIG 326
                +  +      +H    V  SV  EGKD   +   LPG   V +AL      ++IG
Sbjct: 235 YAIDHEADYRAGKIEMHGAG-VDFSVLHEGKDLGRVRLNLPGRHNVLDALATVVTGLSIG 293

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRI 384
           +    +   L   H    RF+   T  R   ++V  DYAH    +   L   R     RI
Sbjct: 294 LTVEQMAAGLALFHGAKRRFQ---TKGRVQDVWVVDDYAHHPTEIATTLLAARQTKPRRI 350

Query: 385 IVVF 388
           I  F
Sbjct: 351 ICAF 354


>gi|293401981|ref|ZP_06646121.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304639|gb|EFE45888.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 523

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 127/320 (39%), Gaps = 55/320 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-------SFQIGPTSTISSFAQDNRLTTPSPIY 169
           I+ +TG+ GK+SV + + Q+ +    +       + ++G T TI  + Q        P++
Sbjct: 181 IIGITGSYGKTSVKNVLYQLMKEDWYALATPQSYNNRMGITKTILEYLQ--------PLH 232

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                 +L   G  HV      H +++  +  ++   G  T +G+ H+    + +   + 
Sbjct: 233 EL----FLCEMGADHV------HEIEE-LMKFVRPQYGIVTAVGQQHLATFHSMENILHE 281

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           KM++ E+ L +E    + AD+ + +    R H   CRV+  G        K + A +   
Sbjct: 282 KMQMIEQ-LGREGIGFLNADNEWIRSYPLRVH---CRVIWFG--------KDMLADYRYG 329

Query: 290 QVTISVEGKDFD---------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            V+   EG  F          F   L GE  + N      +   +G+    + +  E+L 
Sbjct: 330 NVSYDEEGSRFTITHKAVAHVFHTRLLGEHNLMNITCGVAVAHQLGMSWDALGKQCEQLP 389

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFG---CGGDRD 395
            V  R E            +D A+ +N       L  +R +   RII+  G    G  +D
Sbjct: 390 YVTHRLE---KKQMADYTLLDDAYNANPKGARYALDVLREMPQQRIIITPGLIDLGYAQD 446

Query: 396 QGKRPIMGKIALDLADIAIV 415
           +    +   +A  + D+ +V
Sbjct: 447 KENELLGAYMAACVDDVILV 466


>gi|261855756|ref|YP_003263039.1| FolC bifunctional protein [Halothiobacillus neapolitanus c2]
 gi|261836225|gb|ACX95992.1| FolC bifunctional protein [Halothiobacillus neapolitanus c2]
          Length = 429

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 57/233 (24%)

Query: 198 RLDGIKLIAGSF---TNLGRDHIDY---HQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           RLD + ++       TN+G DH  Y    +TQ  Y  A +        ++  A +YAD  
Sbjct: 152 RLDAVNILDADLALITNIGLDHQAYLGDTRTQIGYEKAGVL-------RKGQAAVYADTD 204

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF- 310
             + V+  A+  GC ++    +G+   ++              +E  D    +PLPG F 
Sbjct: 205 PIESVIDHANAIGCPLI---VRGRDFMVE-------ADATGWRLEQGDRSSYWPLPGMFG 254

Query: 311 --QVYNALVAAGL-------------CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             QV NA     L              I  G+ SA             GRFE      R 
Sbjct: 255 RTQVDNAASVVALLQHPKSTLNLRASSIEAGVRSA----------KNRGRFEIWVHEGR- 303

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            ++ +D AH   S+ ++L N+  + T  R + VFG   D     +PI   I+L
Sbjct: 304 -QVILDVAHNLESVRVLLDNLHALATPSRRLAVFGALDD-----KPIEAMISL 350


>gi|182414448|ref|YP_001819514.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
 gi|177841662|gb|ACB75914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
          Length = 442

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 19/119 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTGT+GK+++  F+    +  G  +  +G  +   SFAQ           +A++  
Sbjct: 98  TVIAVTGTNGKTTLTEFLTHALRSIGRDARSVG--NVGHSFAQA----------VAESNG 145

Query: 176 YLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             S Q  V  VS            L   +  A  +TN+  DH++ H   ++YFNAK  L
Sbjct: 146 GTSEQIAVCEVS------SFQAETLKHFRASATLWTNIAEDHLERHPGLESYFNAKWNL 198


>gi|163856170|ref|YP_001630468.1| cyanophycin synthetase [Bordetella petrii DSM 12804]
 gi|163259898|emb|CAP42199.1| cyanophycin synthetase [Bordetella petrii]
          Length = 857

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 150/397 (37%), Gaps = 54/397 (13%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S+FA    G+ P  ++AV GT+GK++       +   SGL   ++G T++   +     +
Sbjct: 461 SMFAEGDDGRIP--VVAVAGTNGKTTTVRLTTHLLAGSGL---RVGMTNSDGVYIGARSI 515

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDY-- 219
            +        A   L+  GV     E +  G+ +  L   +      TNLG  DH+    
Sbjct: 516 DSGDCSGPRSARRVLAHPGVDAAVFETARGGILREGLAFDRCDVAIVTNLGMGDHLGLGY 575

Query: 220 ------------------HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKR 259
                             H    A  NA   +  ++      ++ +  +D A+      R
Sbjct: 576 ISTVEDLAVVKRVIVQYVHAGGTAVLNATDPIVADMASACPGSVTFFSSDPAHPLIGTHR 635

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A          G++  +     + A     +V I++   D          FQV NA+ A 
Sbjct: 636 AQ---------GHRVVYRDGPDIVAAQGDAEVRIAL--ADIPLTHGGAIAFQVDNAMAAV 684

Query: 320 GLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
               ++G+D  ++ + L         VPGRF     + RG  +  DY H  ++++ +++ 
Sbjct: 685 AAAWSLGVDWPVIRQGLAGFISDAQTVPGRFNMF--DYRGATVIADYGHNPDAIQALVQA 742

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIH 434
           +  + + R  VV    GDR         +I  D   D+ +  D   R     ++   +  
Sbjct: 743 VEALPARRRSVVISGAGDRRDDDLRRQTEILGDAFDDVVLYEDQCQRGRADGEVLTLLRQ 802

Query: 435 GIPGFIEKGNRIEAIR-------TAIEMLNKQDVLVV 464
           G+ G  ++   +E IR       TA+  L   D+ +V
Sbjct: 803 GLAG-AQRARHVEEIRGEFLAIDTALARLEAGDLCLV 838


>gi|163746127|ref|ZP_02153486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
 gi|161380872|gb|EDQ05282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
          Length = 466

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           FTNL  DH+D H     Y+ AK RLF E  P    A+I  D+A  +
Sbjct: 193 FTNLSPDHLDRHAGMGGYYAAKRRLFAEGGPDR--AVIGVDEAEGR 236


>gi|118581688|ref|YP_902938.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
 gi|166224713|sp|A1AU60|MURC_PELPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118504398|gb|ABL00881.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
          Length = 460

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 105/272 (38%), Gaps = 20/272 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++             F   +P    A++  DD   + ++ R      R ++
Sbjct: 179 TNIDADHLDHYSGGIEEIKDTFVKFINKVPFYGMAVLCLDDPNIRAILPRVKK---RYMT 235

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIG 326
            G   +   ++     H+    + +   K +   +  F +PG   V NA+    + + + 
Sbjct: 236 YGLSSQ-ADIRATHVRHDGFTTSFTAHFKGYRLGEISFTMPGAHNVLNAMACIAVALELD 294

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRII 385
           +  + + E   +   V  RF   G   RG  +  DY H    ++  L   R      RI+
Sbjct: 295 VPFSAIQEGFSRFGGVGRRFTIKG-EPRGITVVDDYGHHPAEIKATLAAARLGWPERRIV 353

Query: 386 VVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP------EKIRAEII-HGI 436
            VF     R      + G+   A   AD+ I+TD     E P      E++  EI+ HG 
Sbjct: 354 AVFQP--HRYTRTHELFGEFVTAFYDADVLILTDVYAAGEQPVEGATAERLSQEILRHGQ 411

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  NR    +  + ++ + D+++  G G
Sbjct: 412 KDVTWIPNRELIPQHLLGIVKEGDMVITLGAG 443


>gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A]
          Length = 846

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 131/343 (38%), Gaps = 46/343 (13%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----------- 76
           I+ + +DSR +      +F A+   +  G  +IP    +G    V++             
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELR 83

Query: 77  --YSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+Q   A    N+ +     L+V N  K L   A     K    ++ +TG++GK+ V
Sbjct: 84  VESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIV 143

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             ++ Q+          + P   I  S  + ++++  P  ++    LS  +  G+    +
Sbjct: 144 KEWLHQL----------LSPDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGI 190

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246
                     R+  IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +I
Sbjct: 191 SEMGEMGALKRM--IKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKDCDVVI 242

Query: 247 YADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           Y  D    S  V K    A     S     + +++ +V    +   ++      D  F  
Sbjct: 243 YNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEMDNTFCI 302

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           P   +  + NAL     C+ +   +  + E + +L  +  R E
Sbjct: 303 PFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLE 345


>gi|198282931|ref|YP_002219252.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668082|ref|YP_002425134.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247452|gb|ACH83045.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520295|gb|ACK80881.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 455

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 104/285 (36%), Gaps = 44/285 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++  S +  I Q +GL   F IG      +F    RLT  SP ++ +A  
Sbjct: 105 VLAVAGTHGKTTTTSILTWILQEAGLDPGFLIG--GEARNFGVSARLTD-SPFFVIEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y ++        +  S  +  H    I        NL  DH D     +A       L  
Sbjct: 162 YDTA------FFDKRSKFVHYHPRSLI------LNNLEYDHADIFPDMEAIITQFHHLLR 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +    + AII  D       +KR    GC          +  L++       Q    +V
Sbjct: 210 TV--PGAGAIIVKDGV---PALKRVLERGC----------WTPLQRFAGTGEWQVRLDAV 254

Query: 296 EGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +G  F  L          + + G F   NAL A       G+  A+    L     V  R
Sbjct: 255 DGSRFTVLEQGVERGQVGWEMAGSFNAENALAALLAARHAGVPLAVGCAALRSFQGVRRR 314

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVF 388
            E  G  + G  +Y D+AH   ++   +  +R    G  R+I V 
Sbjct: 315 LELRG-RAGGVAVYDDFAHHPTAIAATITALRGRMEGTERLIAVL 358


>gi|282859040|ref|ZP_06268176.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
 gi|282588208|gb|EFB93377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
          Length = 443

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 123/293 (41%), Gaps = 55/293 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I +         P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIFHIFKDAG---YDVGLAGNIGNSLALQVAEDPHDYYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D ++ + + Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDD--MYNFRANIAILLNITPDHLDRYEYKFENYADAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--------SVGY--QGKFIHLKKVCAI 285
               KE   I + DD   K+ +++      R          S+GY  QG++         
Sbjct: 203 N-QTKEDSFIYWNDDPVIKKELEKFDVKAVRYPFSELKEKGSIGYIEQGQYTI------- 254

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPG 344
             +Q    ++E +D      L G+  +YN+L AAG+   I GI    + + L     V  
Sbjct: 255 --EQPTPFNMEQED----LSLTGKHNIYNSL-AAGIAANIGGIKKENIRKSLSDFPGVEH 307

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           R E V      G  Y++ +  +N ++     + ++T+  ++++    G +D+G
Sbjct: 308 RLEKVC--KVAGVQYINDSKATN-VDACWYALESMTTPTVLII----GGKDKG 353


>gi|237753180|ref|ZP_04583660.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375447|gb|EEO25538.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 486

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 132/315 (41%), Gaps = 54/315 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQD--NRLTTPSPIYL 170
           I+AVTG+ GK+S+ +++ QI Q     SF++  T    +T++    D    L+  + IY+
Sbjct: 165 IIAVTGSYGKTSLKNYLSQILQE----SFKVHSTPRSVNTLTGIIADINQNLSPLTDIYI 220

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYF 227
                           VEA + G    + + ++LIA        +G  HI+Y +  +  +
Sbjct: 221 ----------------VEAGARGSGDIK-EIVELIAPQIVVVGKIGEAHIEYFKNIENIY 263

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCAI 285
             K  + E    +   A IY ++     +  R  N       +    QG    LK     
Sbjct: 264 RTKYEILES--SRLQNAYIYKENIQPTNIQARIINFPQDPSDIEATLQGTNFSLK----- 316

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                    V+G+   F   + G F V N   A  +   +GI +  +++  +KL  +  R
Sbjct: 317 ---------VKGEKLSFQTRILGAFNVINISAAIAVGSDLGISNERLVKQAQKLEPINHR 367

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMG 403
              +  N    +I +D ++  N L+ +L+ IR  ++ +G+ I+V     +  +     + 
Sbjct: 368 LSKIVVND---KIILDDSYNGN-LDGMLEAIRLASLHNGKKIIVTPGLVESSKEANIKLA 423

Query: 404 KIALDLADIAIVTDD 418
           +    + DIAI+T +
Sbjct: 424 EAIDKVFDIAIITGE 438


>gi|316984925|gb|EFV63881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
 gi|325140931|gb|EGC63438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis CU385]
 gi|325199604|gb|ADY95059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
          Length = 439

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M    + ++ + +DSR I+AG +F A+ G + D H F+   +A        +   S +D 
Sbjct: 1   MPSESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAA----GAAAVVVSREDC 56

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           +A   +    L VD+T   L   A          +  +TG+ GK++V   +  + +R
Sbjct: 57  AAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRR 109


>gi|295110282|emb|CBL24235.1| folylpolyglutamate synthase/dihydrofolate synthase [Ruminococcus
           obeum A2-162]
          Length = 432

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 38/247 (15%)

Query: 264 GCRVLSVGYQGKFIH-LKKVCA----------IHNKQQVTISVEGKDFDFL-----FPLP 307
           GC V++VG + + +  +++VC           + + + V     G+  ++        L 
Sbjct: 193 GCSVVTVGQRPETMEVIREVCREKGADLTETDLSSAKAVKEDFAGQTLEYRGETYELSLA 252

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-------- 359
           G +Q  NA        A+ +D+  VL H      V  R + +      GR+         
Sbjct: 253 GSYQTENA--------ALALDALEVLNHKGYPTTVEQRKKGLRETKWNGRLTIIHRDPLF 304

Query: 360 -VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTD 417
            VD AH   + +M+  ++R    GR +  F  G  RD+    I+ K+      I  I T 
Sbjct: 305 IVDGAHNPAAADMLEDSVRKYFKGRNMY-FIMGVFRDKDYSYIIRKLCPYAEQIVTIETP 363

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH---ETVHI 474
           DNPR+   +++   +    P      N  +A+     M +++DV++  G      E   I
Sbjct: 364 DNPRALPAQELAEAVRECNPHVQAAENIQDAVNKVFAMADREDVILSFGSLSFIGEITTI 423

Query: 475 VTNGEKK 481
           V N E+K
Sbjct: 424 VKNREEK 430


>gi|126729253|ref|ZP_01745067.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
 gi|126710243|gb|EBA09295.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
          Length = 465

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I  DY 
Sbjct: 280 LPMPGDHNVSNALSAIAVARHLGMTGEEIRAALAAFGGVNRRFTKVG-EVNGVTIIDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
           H    +  +LK  R  + GR+I V
Sbjct: 339 HHPVEIAAVLKAARQASEGRVIAV 362


>gi|126726615|ref|ZP_01742455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703944|gb|EBA03037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 474

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 142/377 (37%), Gaps = 46/377 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS D+R I  G +FVA+  ++ DGH F+ QA+A GA A +V            +  + P+
Sbjct: 27  VSIDTRTIAKGDLFVAL-KDQRDGHEFVAQALAAGASAALVDH------IPDNVAPDAPL 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V N    L    +    +    ++AVTG+ GK+S    ++ +    G           
Sbjct: 80  LIVPNVLTALEALGTAARARTSAKVVAVTGSVGKTSTKEMLRVMLSTQG--------KCH 131

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            +  + +N    P  +    A +  +    G+ H         L Q  +       G  T
Sbjct: 132 AAEKSYNNHWGVPLTLARMPADADFAVIEIGMNHPGEIGPLAKLTQPDI-------GLIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H+      Q     K  LF   L +   AI+  D   S  +M  A   G  +L  
Sbjct: 185 TVAAVHLAAFDNIQGIAVEKSALFSG-LTENGVAIVNGDLETSDVLMNAAQ--GKTILRF 241

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIGID 328
           G    F  + +   +  + Q     +  D  FL+ +  PG     NAL A     A+G D
Sbjct: 242 GSDAGFEFVLENVTV-TEDQTMCQAQTNDSAFLYKISSPGRHFALNALGALASVSALGAD 300

Query: 329 SALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSN------SLEMI----- 372
             L    L +     GR      +    ++      +D A+ +N      ++E++     
Sbjct: 301 MGLAAVDLAQWVPFTGRGQKKIIQLDRGDASLTLTLIDDAYNANPTSVAAAIEILSVSNP 360

Query: 373 LKNIRTITSGRIIVVFG 389
           + NI  I  GR I V G
Sbjct: 361 IDNIGRIRKGRRIAVLG 377


>gi|119478635|ref|ZP_01618538.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
 gi|119448412|gb|EAW29663.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
          Length = 477

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 108/280 (38%), Gaps = 38/280 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  S +  +   + L  +F IG    + + A  N     S   +A+A   
Sbjct: 122 IAVAGTHGKTTTTSLIASVFAEARLDPTFVIG---GLLNSAGTNAQLGESRFLVAEADES 178

Query: 174 -LSYLSSQGVTHV--SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             S+L  Q +  V  ++EA          D +    G F  L +  +++      Y  A 
Sbjct: 179 DASFLHLQPMVSVVTNIEA----------DHMATYDGDFNKLKKTFVEFLHNLPFYGMAV 228

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           M + ++++ +  PA+  A   Y       +H+A   ++ V   G          +     
Sbjct: 229 MCIDDDVVRELLPAVGRATLTYG-----FSHDADFSIVDVNKLG----------LRTSFS 273

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V    + K  D    +PG+  V NA  A  +    GID   +   +EK   V  RF+  G
Sbjct: 274 VKRPGKHKQIDITINMPGDHNVLNATAAIAVATDEGIDDEAIQRGIEKFEGVGRRFQVYG 333

Query: 351 TN--SRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVV 387
                 G  + V DY H    +E  +   R     R +V+
Sbjct: 334 EFDIEEGSVLLVDDYGHHPTEVEATISAARQAWPDRRLVM 373


>gi|319440257|ref|ZP_07989413.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium variabile
           DSM 44702]
          Length = 499

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 94/261 (36%), Gaps = 43/261 (16%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA------ 263
           TN+  DH+D++ T++AY          ++P     +   DD  + E+ +R          
Sbjct: 191 TNIEADHLDFYGTEEAYHEVFGAFAGRVVPG-GFLVTCVDDPGAAELAERVVAGEVELAE 249

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFP----------------L 306
           G RVL  G    F  H             T    G      FP                 
Sbjct: 250 GTRVLGYGTAAAFEAHPTVPVGALIVDAGTTPDGGSQAAVRFPGAGGSGDDTTRTVTVRT 309

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NA  A      +G D   V++ +     V  RFE+ GT + G  +Y DYAH  
Sbjct: 310 PGRHMLLNATAAVLAGGLVGSDLDEVIDGVAAFDGVRRRFEYHGT-AGGVEVYDDYAHHP 368

Query: 367 NSLEMILKNIR---------TITSGRIIVVFGCGGDRDQGKRPIM----GKIALDLADIA 413
             +  +L   R            +GR+I VF          R I        +L LAD A
Sbjct: 369 TEVRAVLSAARDKVAARAAADGVAGRVIAVF----QPHLYSRTITFAEEFAESLSLADTA 424

Query: 414 IVTDDNPRSEDP-EKIRAEII 433
           +V D     EDP E + + II
Sbjct: 425 VVLDIYGAREDPVEGVTSRII 445


>gi|322436304|ref|YP_004218516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164031|gb|ADW69736.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 38/295 (12%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H+T + Y+ AK R+       E   I+ A+D  ++++      A  R    
Sbjct: 184 NVTPDHLDRHKTFERYWEAKARI-TACQESEDFLILNAEDVNAQKMA-----AKTRAQIY 237

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAI 325
            + G+   +K+   +H +    +  EG   + + P     L G   V N L A       
Sbjct: 238 WFSGRR-QVKQGAFVHGESVFFLGKEGGKPEPVLPVSEIALKGAHNVENVLAAVCAARLA 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GID+  +   ++    V  R E V    R G  + + +  +N ++  +K + +   G I 
Sbjct: 297 GIDAETIRAAVKGFRAVEHRLELV--RVRNGVEFYNDSKATN-VDATVKAVESFAGG-IH 352

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKIRAEIIHGIPGFI 440
           ++ G G D+D            D A ++ +  +  R         EKI  + + G+   +
Sbjct: 353 LILG-GKDKDS-----------DYATLSALLKERVRVVYTIGSAAEKIERQ-LDGVVKIV 399

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           + G   +A++ A E     +++++A     +    TN E++  V  D+   +LGL
Sbjct: 400 QAGTLDKAVKLAAEAAVSDEIVLLA-PACSSFDQFTNYEERGRVFRDV---VLGL 450


>gi|253581419|ref|ZP_04858645.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium varium ATCC
           27725]
 gi|251836783|gb|EES65317.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium varium ATCC
           27725]
          Length = 452

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 288 KQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           K    ++++GKD   +   +PG   + N+L         G+D   + + LE       R+
Sbjct: 249 KTSYNVAIKGKDVGRYTISIPGHHNILNSLPVIYYAKKFGVDEEFLKKALENFKGSKRRY 308

Query: 347 EFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           + +  N  +G +I  DYAH    +   L+  ++I   ++ ++F
Sbjct: 309 DVLYCNEDKGIKIIDDYAHHPTEIRATLQGAKSIEHEKLTIIF 351


>gi|218247349|ref|YP_002372720.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8801]
 gi|218167827|gb|ACK66564.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8801]
          Length = 494

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 63/290 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S V  +  ++GL                D  +     +   +  ++L
Sbjct: 145 IAVAGTHGKTTTSSLVGYVLLKAGL----------------DPTIIVGGEVDAWEGNAHL 188

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY------FNAKM 231
            S        + S   L +H         G  TN+  DH D++++ +        F  + 
Sbjct: 189 GSSKYLVAEADESDGSLVKH-----SPTIGVVTNIELDHPDHYESLEQVVRTFQIFETQC 243

Query: 232 RLF------EELLPKESPAIIYADDAYSK---EVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +       E +  + +P I Y+ D        V    ++A   +  V  +G+F+     
Sbjct: 244 EILVGCIDCETVRSQLNPTITYSLDPTKNADYTVKNLTYDAQGTIAEVWERGRFL----- 298

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                + ++TI             PGE  V NAL A  +   +G+D  ++ + L      
Sbjct: 299 ----GQMRLTI-------------PGEHNVSNALAAVAVGRKLGLDFQVIADALATFGGA 341

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVF 388
             RFE  G  S G     DYAH  + ++  L   R+      S R++ +F
Sbjct: 342 KRRFEHRGY-SNGITFIDDYAHHPSEIQATLSAARSKVDQNGSSRVVAIF 390


>gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
 gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
          Length = 846

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 131/343 (38%), Gaps = 46/343 (13%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----------- 76
           I+ + +DSR +      +F A+   +  G  +IP    +G    V++             
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELR 83

Query: 77  --YSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+Q   A    N+ +     L+V N  K L   A     K    ++ +TG++GK+ V
Sbjct: 84  VESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIV 143

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             ++ Q+          + P   I  S  + ++++  P  ++    LS  +  G+    +
Sbjct: 144 KEWLHQL----------LSPDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGI 190

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246
                     R+  IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +I
Sbjct: 191 SEMGEMGALKRM--IKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKDCDVVI 242

Query: 247 YADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           Y  D    S  V K    A     S     + +++ +V    +   ++      D  F  
Sbjct: 243 YNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEMDNTFCI 302

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           P   +  + NAL     C+ +   +  + E + +L  +  R E
Sbjct: 303 PFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLE 345


>gi|251788251|ref|YP_003002972.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya zeae Ech1591]
 gi|247536872|gb|ACT05493.1| UDP-N-acetylmuramate/alanine ligase [Dickeya zeae Ech1591]
          Length = 486

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 150/417 (35%), Gaps = 83/417 (19%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG----- 67
           EL    SI P   R R I+ V      +      +A  G +  G    P A+ Q      
Sbjct: 5   ELAKLRSIVPEMHRVRHIHFVGIGGAGMGGIAEVLANEGYEISGSDLAPNAVTQQLTDLG 64

Query: 68  --------------AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
                         A  +VVSSA +  +          I V+        L   R +G  
Sbjct: 65  ARIYFHHRPENVNEASVVVVSSAIAADNPEIIAAHEARIPVIRRAEMLAELMRFR-HG-- 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ GT GK++  + V  I   +GL  +F  G    + +     RL + S   +A+
Sbjct: 122 ----IAIAGTHGKTTTTAMVTSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAE 174

Query: 173 A----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           A     S+L  Q +  +     +  +D ++        G F NL +  I++      Y +
Sbjct: 175 ADESDASFLHLQPMVAIVTNIEADHMDTYQ--------GDFENLKQTFINFLHNLPFYGH 226

Query: 229 AKMRL----FEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           A M L      ELLPK    I    ++DDA  +    R          VG QG F     
Sbjct: 227 AVMCLDDAVIRELLPKVGRHITTYGFSDDADVRVADYR---------QVGAQGLF----- 272

Query: 282 VCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                     T++ +GK   +     PG     NA  A  +    GID   +L  L +  
Sbjct: 273 ----------TLARQGKPLLNVTLNAPGRHNALNAAAAVAVATEQGIDDEAILRALARFQ 322

Query: 341 VVPGRFEFVG------TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               RF+F+G       N + G   +  DY H    ++  +K  R      R++++F
Sbjct: 323 GTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIF 379


>gi|183221139|ref|YP_001839135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911230|ref|YP_001962785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775906|gb|ABZ94207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779561|gb|ABZ97859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase
           D-alanyl-D-alanine-adding enzyme;
           D-alanyl-D-alanine-adding enzyme) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 459

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 20/228 (8%)

Query: 18  LSIFPMQ--WRER---KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           LS+F ++  W      K   +S+ S+ IQ   +FV + G + DGH +I  A+  GA   +
Sbjct: 13  LSLFSLKPVWENPMNPKFFWISTSSKEIQKNTLFVPLRGER-DGHEYIADALKAGATGFL 71

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
               + +    +       I V D T   L   A+    +    ++A+TG+SGK+S    
Sbjct: 72  CEKNHPILKNLSNEDQKKAIFVKD-TLIALGTLANFHRNRFCPIVIAITGSSGKTSTKDL 130

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +       GL SF    +  ++    +N +  P  ++       ++ +    +     +H
Sbjct: 131 L------GGLFSFLGSKSLVVTEKNYNNEIGVPFTLF------RITERTQVVICEMGMNH 178

Query: 193 GLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             + +RL  +     +  TN+G  HI+  ++++     K+ +   L P
Sbjct: 179 RGEINRLSKMAEPTHALITNIGSAHIENLKSRENIAEEKIDIINGLRP 226


>gi|54298605|ref|YP_124974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Paris]
 gi|62900489|sp|Q5X1S4|MURD_LEGPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53752390|emb|CAH13822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Paris]
          Length = 447

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+V + V ++ + +G   F++     I          TP        L  
Sbjct: 107 VIAITGTNGKSTVTTLVGEMAKAAG---FRVAVAGNIG---------TP-------VLDM 147

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L  +    + V E SS  LD      +  +  +  N+  DH+D H T +AY  AK R++
Sbjct: 148 LDDEHHYDLWVLELSSFQLDLTY--SLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIY 204


>gi|296134862|ref|YP_003642104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
 gi|295794984|gb|ADG29774.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
          Length = 514

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 21/133 (15%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +L A R Y      I+A+TGT+GK++V      + +R+G S    G  S           
Sbjct: 111 ALRAERGYAP---KIVAITGTNGKTTVTRLTGLMLERAGWSVAVAGNIS----------- 156

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
               P  L    + L +  +    V E SS  L  H ++G    A +  N+ +DH+D+H 
Sbjct: 157 ----PSMLDVLQARLDADDLPAAWVLELSSFQL--HGMEGFAADAATVLNITQDHLDWHG 210

Query: 222 TQQAYFNAKMRLF 234
              AY   K  +F
Sbjct: 211 DMTAYAADKANIF 223


>gi|190573195|ref|YP_001971040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Stenotrophomonas maltophilia K279a]
 gi|190011117|emb|CAQ44726.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Stenotrophomonas maltophilia K279a]
          Length = 469

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 116/288 (40%), Gaps = 24/288 (8%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           + +VE SS+   +    G +       NL  +H+D+H ++Q Y   K+RL  E  P+   
Sbjct: 166 YWAVELSSYQTGEVARSGARPQVAVVLNLFPEHLDWHGSEQRYIEDKLRLVTEAAPRI-- 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ A D +               LS+    + +   ++   H +  +    E   FD  
Sbjct: 224 AVLNATDPH------------LAALSL-PDSEVVWFNQLQGWHMRGDIVHRGEQAVFDTR 270

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG     N         A+G+D+A +   ++    +P R + +G     G  YV+ 
Sbjct: 271 NAPLPGRHNRGNLCAVLAALEALGLDAAALAPAVQDFRPLPNRLQRIGVAD--GLTYVND 328

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNP 420
           +  S +    L  +      RI ++ G G DR       M  +A D+  + IVT   + P
Sbjct: 329 S-ISTTPHASLAALECFAGQRIALLVG-GHDRGLDWTDFMQHMAHDVPPVEIVTMGSNGP 386

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           R     +  A+   G  G    G+  EA+  A   L +Q  +V+   G
Sbjct: 387 RIHAMLQPLADA--GRFGLHAAGDLAEAMALARTALGEQGGVVLLSPG 432


>gi|148265303|ref|YP_001232009.1| FolC bifunctional protein [Geobacter uraniireducens Rf4]
 gi|146398803|gb|ABQ27436.1| FolC bifunctional protein [Geobacter uraniireducens Rf4]
          Length = 424

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D+  +   +EK H  PGR E +GT+ R   I +D AH     + + + +  I   R+++
Sbjct: 269 LDAGTLRSGIEKAHW-PGRMEILGTSPR---ILLDGAHNPAGSKALAEALEDIPRDRLLI 324

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGN 444
           V G  GD+D     I+G + L LAD  +    +     P +  AE     G+    + G 
Sbjct: 325 VAGMMGDKDVDG--ILGPL-LPLADEMLAVAPSLARALPSEKLAEFCRSRGVTAH-DAGT 380

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
               + +A ++    D+++V G
Sbjct: 381 VAAGLSSARDIAGPDDLILVCG 402


>gi|298377157|ref|ZP_06987111.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
 gi|298266141|gb|EFI07800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
          Length = 445

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 46/261 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++       I + +G+    +G    + +         P  +Y+      
Sbjct: 105 MICITGSNGKTTTTMLTYHILKEAGV---DVGLAGNVGNSLALQVAEDPHAVYV------ 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y+   Q Y +AK R+ +
Sbjct: 156 ----------IELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQ 203

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               K+   I + DD   ++E+ KR   A     +  Y+        V       QV I 
Sbjct: 204 N-QTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETYEN------GVKGYTENNQVVIE 256

Query: 295 VEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                F     L  L G   +YN+L       A GI S +V  H EK+       +F G 
Sbjct: 257 TVNGTFTMEQDLLALTGTHNLYNSL-------ASGIASKIVDIHDEKIRASLS--DFTGV 307

Query: 352 NSRGGRIY----VDYAHTSNS 368
             R  ++     VDY + S +
Sbjct: 308 EHRLEKVLRVRGVDYINDSKA 328


>gi|304314889|ref|YP_003850036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588348|gb|ADL58723.1| predicted UDP-N-acetylmuramyl tripeptide synthase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 469

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 116/317 (36%), Gaps = 33/317 (10%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + PI++VD      +L  S    +   +   +AVTGT+GKS+    +  I   +G SS+ 
Sbjct: 72  DVPIILVDRIEIANALALSWTINRFASSSRRIAVTGTNGKSTTTHMINHIITTAGRSSYT 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLDGIKL 204
              T + S F      T   P+         S + +  + +E S     L +   D  +L
Sbjct: 132 --NTDSRSEFN-----TLIDPVVAQHIAEAASREQLEFMVIEVSEVQGWLGRVMRDHAQL 184

Query: 205 IAGS-------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           +  +        TN+  DHI   ++    F         +      A++ +DD   + + 
Sbjct: 185 MTSAIQPEMVVITNVAMDHIGLVESVDDVFREVSGALRAM--DSGVAVLNSDDERVRAMA 242

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               N   R +  G  G   +      IH    + I  +        P  GE  + N L 
Sbjct: 243 D--INPLLRTVFYGSHGPVRYTGN--GIHCGDDLIIQTDE------LPFTGEHFIQNTLA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    + +G     V   +E    +  RF  +  N    R+  D+AH  + +   +++  
Sbjct: 293 AITAALELGFSYEDVRRGVETYRALKRRFTHLMDNP---RVIDDFAHNPDGIRATVRSAA 349

Query: 378 TITSGRIIVVFGCGGDR 394
               GR+ VV    G R
Sbjct: 350 CDLKGRLWVVNAIRGSR 366


>gi|225552147|ref|ZP_03773087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia sp. SV1]
 gi|225371145|gb|EEH00575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia sp. SV1]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IIAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               Y   K ++F   + + S  +I  D AY K   K
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYYKYFSK 231


>gi|52842822|ref|YP_096621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|62900494|sp|Q5ZSA3|MURD_LEGPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52629933|gb|AAU28674.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 447

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+V + V ++ + +G   F++     I          TP        L  
Sbjct: 107 VIAITGTNGKSTVTTLVGEMAKAAG---FRVAVAGNIG---------TP-------VLDM 147

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L  +    + V E SS  LD      +  +  +  N+  DH+D H T +AY  AK R++
Sbjct: 148 LDDEHHYDLWVLELSSFQLDLTY--SLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIY 204


>gi|148358649|ref|YP_001249856.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|296108261|ref|YP_003619962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280422|gb|ABQ54510.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|295650163|gb|ADG26010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 447

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+V + V ++ + +G   F++     I          TP        L  
Sbjct: 107 VIAITGTNGKSTVTTLVGEMAKAAG---FRVAVAGNIG---------TP-------VLDM 147

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L  +    + V E SS  LD      +  +  +  N+  DH+D H T +AY  AK R++
Sbjct: 148 LDDEHHYDLWVLELSSFQLDLTY--SLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIY 204


>gi|251772200|gb|EES52770.1| UDP-N-acetylmuramate--alanine ligase [Leptospirillum
           ferrodiazotrophum]
          Length = 471

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 127/318 (39%), Gaps = 45/318 (14%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRS 140
           S+ IR + P  +   TR    +    +     +P   +AVTG+ GK++  S V  +   +
Sbjct: 73  SSAIRHSNPEWIAAVTRGIPIVHRGEMLASLVNPSYGIAVTGSHGKTTTTSMVASLLVSA 132

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           GL      PT  +       R+++    +   AL   S   VT       S      RL 
Sbjct: 133 GLD-----PTCVVG-----GRVSS----FPGCALVGRSRYFVTEADESDGSFMKLAPRL- 177

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVM 257
             +++    TN+ R+H+D++ T    F+  ++ F   L         I+  DD     ++
Sbjct: 178 --RIV----TNIDREHMDFYGT----FDNLIQAFSTYLDTGDEGGIGILCIDDPGVAALI 227

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFD-FLFPLPGEFQVYN 314
           +R        L+ G       ++    +H        + V+G  +  F   +PG   + N
Sbjct: 228 ERISTI---PLTYGLSSA-ARVRAENIVHEGVGSSFDVRVDGACWGRFSLHVPGMHNILN 283

Query: 315 ALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEM 371
           AL A  AG+C+ I  D  L+ + L +   V  RF  +G   R G I V DY H    +  
Sbjct: 284 ALAAICAGICLEISPD--LMRQALSRFESVGRRFTLLG--ERDGVIVVDDYGHHPTEIRA 339

Query: 372 ILKNIRTITSG-RIIVVF 388
            L   R    G RI+ VF
Sbjct: 340 TLAAARLAYPGRRIVAVF 357


>gi|257061316|ref|YP_003139204.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8802]
 gi|256591482|gb|ACV02369.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8802]
          Length = 494

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 109/289 (37%), Gaps = 61/289 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S V  +  ++GL                D  +     +   +  ++L
Sbjct: 145 IAVAGTHGKTTTSSLVGYVLLKAGL----------------DPTIIVGGEVDAWEGNAHL 188

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY------FNAKM 231
            S        + S   L +H         G  TN+  DH D++++ +        F  + 
Sbjct: 189 GSSKYLVAEADESDGSLVKH-----SPTIGVVTNIELDHPDHYESLEQVVRTFQIFETQC 243

Query: 232 RLF------EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVC 283
            +       E +  + +P I Y+ D         A NA   V ++ Y  QG    + +  
Sbjct: 244 EILVGCIDCETVRSQLNPTITYSLDP--------AKNADYTVKNLTYDAQGTIAEVWERG 295

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++TI             PGE  V NAL A  +   +G+D  ++ + L       
Sbjct: 296 RFLGQMRLTI-------------PGEHNVSNALAAVAVGRKLGLDFQVIADALATFGGAK 342

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVF 388
            RFE  G  S G     DYAH  + ++  L   R+      S R++ +F
Sbjct: 343 RRFEHRGY-SNGITFIDDYAHHPSEIQATLSAARSKVDQNGSSRVVAIF 390


>gi|224532736|ref|ZP_03673353.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           burgdorferi WI91-23]
 gi|224512354|gb|EEF82738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           burgdorferi WI91-23]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IVAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               Y   K ++F   + + S  +I  D AY K   K
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYYKYFSK 231


>gi|330823366|ref|YP_004386669.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
 gi|329308738|gb|AEB83153.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
          Length = 863

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 13/166 (7%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQV NA+ A      +G+    +   L          PGRF  +  + RG  +  DY H 
Sbjct: 674 FQVENAMAAIAATWGLGLPWQTIRRGLAGFVNDSDNAPGRFNVM--DYRGATLIADYGHN 731

Query: 366 SNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++  +++ +  I +  R +V+ G G  RDQ        +     D+ +  D   R   
Sbjct: 732 PDAIRALVQAVDAIPAKQRSVVISGAGDRRDQDIIEQTRTLGAAFDDVVLYQDACQRGRA 791

Query: 425 PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++ A +  G+ G        E      AI  A+E L   D+ +V
Sbjct: 792 DGEVLALLKQGLEGAPRTRYVTEIHGEFVAIDHALERLQPGDLCLV 837


>gi|238893068|ref|YP_002917802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545384|dbj|BAH61735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 438

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I   A    L T   +Y+ +  S+
Sbjct: 107 IIAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIGLPAL-MLLDTDRELYVLELSSF 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              Q  T  S++A               +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 163 ---QLETTFSLQA---------------VAATILNVTEDHMDRYPLGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAKTCVVNADDALTMPV----RGADERCISFGVDVGDYHLNR 242


>gi|302344210|ref|YP_003808739.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
 gi|301640823|gb|ADK86145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
          Length = 446

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 21/131 (16%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GKS+V S +  + +  GL +F  G             L TP   Y+A A      
Sbjct: 110 ITGTNGKSTVTSLIAAMLEAEGLRAFAGG------------NLGTPLCAYVAGA------ 151

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q      +E SS   D      ++   G   N+  DH+D + + + Y  +K RL      
Sbjct: 152 QDDDWAVLEVSSFQTDTAV--SLRPKVGVILNITDDHLDRYDSFEQYAQSKFRLLANQAE 209

Query: 240 KESPAIIYADD 250
            +  A++ ADD
Sbjct: 210 GDV-AVLCADD 219


>gi|119773906|ref|YP_926646.1| UDP-N-acetylmuramate [Shewanella amazonensis SB2B]
 gi|119766406|gb|ABL98976.1| UDP-N-acetylmuramate [Shewanella amazonensis SB2B]
          Length = 458

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 111/289 (38%), Gaps = 51/289 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK+S +S +  + +  G    F IG      +F    RL   SP ++ +A  
Sbjct: 105 VLAVAGTHGKTSTSSMLAWVLEHCGYEPGFLIG--GVPQNFGVSARLGN-SPFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H      +I     NL  DH D              +F+
Sbjct: 162 YDSA------FFDKRSKFV--HYQPKTLVI----NNLEFDHAD--------------IFD 195

Query: 236 EL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ 290
            L  + ++   +I       K +  +   A   V+  G    Q  F H     A  +   
Sbjct: 196 SLADIQRQFSHVIRTVPGCGKVIWPKGSKAVAEVIEKGLWSEQETFSHQ----ADADWSV 251

Query: 291 VTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             ++ +G  F+ LF           L G   + NA++A      +G+  A  +E L    
Sbjct: 252 RPLAADGHKFEVLFGGEVQGVLDWQLIGNHNMENAVMAIAAARHVGVAPAAAIEALSGFM 311

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               R E +G    G  +Y D+AH   ++E  LK +R  + + RI VV 
Sbjct: 312 PPKRRLELIGEVG-GVSLYDDFAHHPTAIETTLKGLRAKVGNARIFVVL 359


>gi|332521388|ref|ZP_08397844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
 gi|332043116|gb|EGI79314.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
          Length = 400

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 35/220 (15%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+ G+  +G+ F  +A+ +GA+ +++              +++  ++V+N  + L  
Sbjct: 1   MFFALKGDNFNGNTFSTEALKKGAKYVIIDEL--------EYNTSSQTILVENVLETLQQ 52

Query: 105 FAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            A+  R Y   P  I+ +TG++GK++    +  +  +      +   T+T  +   +N +
Sbjct: 53  LATYHREYLNIP--IIGLTGSNGKTTTKELINTVLSK------KYNTTATKGNL--NNHI 102

Query: 163 TTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA----GSFTNLGRDHI 217
             P        L+ LS    T +  VE  ++ L +  ++ +  IA    G  TN G+ H+
Sbjct: 103 GVP--------LTLLSMTKDTEIGIVEMGANHLKE--IEFLSNIAKPDFGYITNFGKAHL 152

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           +   + Q   N K  L+  L+  +      ADD    E +
Sbjct: 153 EGFGSIQGVINGKSELYNYLITYKKHIFFNADDTIQNEKL 192


>gi|256372024|ref|YP_003109848.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008608|gb|ACU54175.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 455

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 15/88 (17%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           RF+F     RG RI  DYAH    +   L+  R + SGRI+VVF       Q  R    K
Sbjct: 312 RFQF-KRELRGARIIDDYAHLPGEITATLQAARQLGSGRIVVVF-------QPHRYSRTK 363

Query: 405 I-------ALDLADIAIVTDDNPRSEDP 425
           +       AL  AD  +VTD     E+P
Sbjct: 364 LLGVELGRALGDADEVVVTDVYAAGEEP 391


>gi|90424796|ref|YP_533166.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
 gi|109892731|sp|Q211T9|MURC_RHOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|90106810|gb|ABD88847.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
          Length = 467

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 132/338 (39%), Gaps = 58/338 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+ +VVS+A         I+ + P L+    ++   +  + +  +    ++ +A+ GT 
Sbjct: 66  GADVVVVSTA---------IKRDNPELLAARAQRIPVVRRAEMLAELMRLKSCVAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S V  +     L + +  PT      I+++  + RL     +            
Sbjct: 117 GKTTTTSMVAAL-----LDAGEFDPTVINGGIINAYGTNARLGAGEWMV----------- 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 VEA     D+     +KL A     TN+  +H+D+ +T  A   A  R F E +
Sbjct: 161 ------VEA-----DESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQEA-FRDFVENV 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P    A++  D    + ++ +  +   R+++ G +     ++ +    N       V  +
Sbjct: 209 PFYGFAVMCIDHPVVQALVGKIEDR--RIITYG-ENPQADVRLLDLTPNGGSSAFRVAFR 265

Query: 299 D---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           D          D + P+PG     NA  A  +   +G+    + + L     V  RF   
Sbjct: 266 DRKAGTAHEIADLVLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAGFGGVRRRFTKT 325

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           G    G  I  DY H    +  +LK  R  T G++I V
Sbjct: 326 G-EWNGVTIIDDYGHHPVEIAAVLKAARESTKGKVIAV 362


>gi|118590894|ref|ZP_01548294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Stappia
           aggregata IAM 12614]
 gi|118436416|gb|EAV43057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Stappia
           aggregata IAM 12614]
          Length = 466

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 32/187 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+  + +  + +  G    Q+G             + TP        L  
Sbjct: 116 LIAITGTNGKSTTTALIAHLLKALG-RDVQLG-----------GNIGTP-------VLEL 156

Query: 177 LSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              Q   H  VE SS+ +D    LD      G   NL  DH+D H + + Y   K    E
Sbjct: 157 DPPQPGRHYVVECSSYQIDLAPTLDA---TVGIHMNLSPDHLDRHGSMENYAAIK----E 209

Query: 236 ELLPKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQ 290
            L+     A++  DD  S  +   M+ A    CR+        G +    ++   H+  Q
Sbjct: 210 RLVAGAKVAVVGVDDRLSSAIADRMELARKPVCRIAGEKELTNGIYARHGRLIEAHDGSQ 269

Query: 291 VTISVEG 297
           V +++ G
Sbjct: 270 VEVALLG 276


>gi|153216045|ref|ZP_01950250.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           1587]
 gi|153826205|ref|ZP_01978872.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MZO-2]
 gi|229512437|ref|ZP_04401910.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           TMA 21]
 gi|262190863|ref|ZP_06049082.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           CT 5369-93]
 gi|124114495|gb|EAY33315.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           1587]
 gi|149740065|gb|EDM54234.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MZO-2]
 gi|229350518|gb|EEO15465.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           TMA 21]
 gi|262033254|gb|EEY51773.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           CT 5369-93]
          Length = 421

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 22/183 (12%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL+A G C  + I    +++ L    +  GR + +   S    I +D A
Sbjct: 254 LPLP---NAATALMALG-CSGLAISDINIVDGLRNAQLA-GRMQVI---SHQPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIA-IVTDDNPR 421
           H  +S   +++ +      R I +VFG   D+D         IA  +A+++  VT   P 
Sbjct: 306 HNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD---------IASTVAELSPAVTHWYPA 356

Query: 422 SEDPEK--IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           S    +    A++   +P  I +  N + A   A+     QDV+VVAG  H    ++ + 
Sbjct: 357 SLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDVIVVAGSFHTVGEVLEHW 416

Query: 479 EKK 481
           +K+
Sbjct: 417 QKR 419


>gi|269795573|ref|YP_003315028.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
 gi|269097758|gb|ACZ22194.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
          Length = 499

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 40/212 (18%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTS 124
           GA+ +VVSSA         +R + P LV   +     L  S+           +AV G  
Sbjct: 73  GAQTLVVSSA---------VREDNPELVAARSAGLRVLHRSQALAILMSGSRAVAVAGAH 123

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++ ++    + +  GL  SF IG +    + A     +    + +A+A     S+L+ 
Sbjct: 124 GKTTTSAMTAVVLREVGLDPSFAIGGSVITETGAVPGGHSGTGDVLVAEADESDGSFLAY 183

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    V                        TN+  DH+D++ T+ A+  A +     ++P
Sbjct: 184 RPTVAV-----------------------VTNVEPDHLDHYGTRAAFEEAFVEFAGNIVP 220

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             +  +  ADDA + E+ +R   AG  V++ G
Sbjct: 221 GGT-LVACADDAGAAELARRHAAAGGEVVTYG 251


>gi|327404198|ref|YP_004345036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
 gi|327319706|gb|AEA44198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
          Length = 447

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 36/239 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSY 176
           + +TG++GK++    +  + +++GL   ++G    +  SFA+   L   + IY+      
Sbjct: 109 VCITGSNGKTTTTMLIHHMLKKAGL---KVGLAGNVGYSFAKQVAL-EDNEIYV------ 158

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   ++  K      TN+  DH+D Y    Q Y N+K R+  
Sbjct: 159 ----------LELSSFQLDD--MEDFKAEIAILTNITPDHLDRYEYNMQLYVNSKFRILN 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVT 292
                +       D     E+ KR+ +A     S+     QG +   K++  I+   Q T
Sbjct: 207 NQTAGDYFIYNADDKTILAELEKRSISAQKLPFSLTQEFEQGAYTANKQLI-INFNNQFT 265

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
           +S+          L G+    N+L A+GL   I  I   +V E L     V  R EFV 
Sbjct: 266 MSIHE------LALKGKHNTQNSL-ASGLAGRILDIRKDIVRESLSDFVNVEHRLEFVA 317


>gi|239617757|ref|YP_002941079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506588|gb|ACR80075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 446

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 90/240 (37%), Gaps = 31/240 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F+A+ G + DG+ FI  A+ +GA   V + +           S+ P +  
Sbjct: 24  DSRVVKIGDVFIALKGTRVDGNDFIDDALKRGAIFGVSNRS-----------SDNPAVFF 72

Query: 96  DNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               K L + A+    KH   ++ +A+TG++GK++    +  I    G            
Sbjct: 73  HPDPKKLLIEAAAFILKHSKIKHKIAITGSNGKTTTKEILASILSDYG------------ 120

Query: 154 SSFAQDNRLTTP--SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
             F     L T    PI + +  S L+           S  G      D +        N
Sbjct: 121 KVFKTPGNLNTEIGIPIAILENRSQLAECDYAIFEFGTSKKGDISFLTDLVNPDIAVLLN 180

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H      +      K  +FE  L K+S AI   DD   K +        C+ L  G
Sbjct: 181 VGTAHRGNFNDETELLQEKCSIFET-LQKDSTAITNGDD---KRIRSMISELSCKKLFFG 236


>gi|323487062|ref|ZP_08092370.1| tetrahydrofolate synthase [Clostridium symbiosum WAL-14163]
 gi|323399563|gb|EGA91953.1| tetrahydrofolate synthase [Clostridium symbiosum WAL-14163]
          Length = 455

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 130/344 (37%), Gaps = 64/344 (18%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V+  R+ L +       +    I+ + GT+GK SV +F+  I + SG  SF +  +  +
Sbjct: 31  TVETVREMLKILG---ISQEDMKIVHIAGTNGKGSVCAFLSSILRESG-HSFAVFTSPHL 86

Query: 154 SS----FAQDNRLTTPSPIYLA-----KALSYLSSQGVTH------------VSVEAS-- 190
            S    FA + R         A      AL      G  H            V V+ S  
Sbjct: 87  LSIRERFAFNGRDVEDELFLFAFRKVCDALEAFGEIGAGHPSYFEFLFLMFMVMVKESPC 146

Query: 191 -----SHGLDQHRLDGIKLI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                  GL   RLD    +    A   T++  DH++Y     +    +      ++   
Sbjct: 147 DYVILETGLGG-RLDATNCVEHPLAAVITSVSLDHMEYLGDTVSKIAGEK---AGIIKAG 202

Query: 242 SPAIIYADDAYSKEVMK-RAHNAGCRVLSV---GYQGKFI---HLKKVCAIHNKQQVTIS 294
            P I     A +  V++ +A   G R   V    Y G  +   HLK +    NK      
Sbjct: 203 VPVIFDNTSAEASSVIRAKAEEMGSRAWPVDNTSYSGLELDGDHLKLLA--KNKDG---- 256

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +++    P   E+Q  N+++A      +GI   ++   + +  V PGR E +  +  
Sbjct: 257 --DREYRLDIPFAAEYQAVNSMLAFRTAELMGIGEDVICRGIGQA-VWPGRMEQIMKD-- 311

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRD 395
              +Y+D AH    +    K  RTI +   GR I+VF    D++
Sbjct: 312 ---VYLDGAHNEGGIREFAKAARTIAARHGGRKILVFAVVSDKE 352


>gi|315223120|ref|ZP_07864988.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus anginosus
           F0211]
 gi|315187809|gb|EFU21556.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus anginosus
           F0211]
          Length = 443

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 69/182 (37%), Gaps = 13/182 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + S  + +Y +D   KE+ +   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQVSKGLFVYGED---KELRRVTANAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
                  FI    +          +S  G++  +F  P  G   + NA    GL    G 
Sbjct: 224 GFKEGNDFI-AHDLLRSTTGSSFKVSFHGEELGEFKIPSFGRHNIMNATAVIGLLYTAGF 282

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIV 386
           D  LV EHL     V  RF     N  G  I  D+AH    +   L   R    S  I+ 
Sbjct: 283 DLNLVREHLVTFGGVKRRFTEKMVN--GTTIIDDFAHHPTEIIATLDAARQKYPSKEIVA 340

Query: 387 VF 388
           +F
Sbjct: 341 IF 342


>gi|283471006|emb|CAQ50217.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 437

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+ +   I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKESDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 821

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 102/231 (44%), Gaps = 32/231 (13%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDF 82
           R  +I+ + +DSR +      +F A+   + DGH ++ +   +G  + VV      +Q F
Sbjct: 20  RSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRSFVVGELPADMQSF 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ Q+     L
Sbjct: 80  Q-----DANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQL-----L 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD 200
           S  ++    T S  + ++++  P  ++L    + L+    G++ +    +   +      
Sbjct: 130 SPDRV---VTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTI------ 180

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD 250
            IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   I+Y  D
Sbjct: 181 -IKPTVGILTNIGGAH------QENFFSLQDKCMEKLTLFKDCDVIVYDGD 224


>gi|326202902|ref|ZP_08192769.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986979|gb|EGD47808.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 893

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 54/288 (18%), Positives = 114/288 (39%), Gaps = 31/288 (10%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L  + +G TST   +  D  +          A   L+++ V    +E +  G+ +  L  
Sbjct: 504 LMGYNVGMTSTSGIYVGDECVQKGDNTGPVSAEVILTNKEVDIAVLETARGGIVRRGLGY 563

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKRA 260
                G   N+  DH+           AK + L  E +  +  A++ ADD  +  +++R 
Sbjct: 564 DLADVGVLINISDDHLGIDGINTIEDLAKTKALVVEAVKHDGYAVLNADDGMTPYILERT 623

Query: 261 ------------------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                             H    + ++V  +  F+ +++    +NK+   IS++  D   
Sbjct: 624 RSNVIMFSRGISNPVFKRHCKNPKNIAVFVRESFVWIQR----NNKKIPLISLD--DIPI 677

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRI 358
            F    +  + N+L A    I + I    +++ +      + + PGRF      +   ++
Sbjct: 678 TFGGIVDCNIENSLAAISALIGLNIPLDAIVKGMNTFQPDMELNPGRFNIFDMGTF--KV 735

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            +DY+H       ++K ++ I + R++ + G  GDR       +G++ 
Sbjct: 736 MIDYSHNIAGYSAVVKFMQRIKAKRLVGIIGMPGDRQDSNLKEVGELC 783


>gi|111018100|ref|YP_701072.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
 gi|123145349|sp|Q0SHS2|MURC_RHOSR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110817630|gb|ABG92914.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
          Length = 503

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 127/347 (36%), Gaps = 71/347 (20%)

Query: 84  ATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           A I  + P LV    R        ++ AS + G      L V+GT GK+S  S +    Q
Sbjct: 80  AAIPKDNPELVEAARRGIPVILRPAVLASLMQG---HRTLLVSGTHGKTSTTSMLVVALQ 136

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G             SFA    L        A   ++  S  V     + S   L Q+ 
Sbjct: 137 HCGFDP----------SFAVGGELNE------AGTNAHHGSGDVFVAEADESDGSLLQYE 180

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKE 255
            D + +     TN+  DH+DY  + +AY    +++F++   + SP    +   DD  S  
Sbjct: 181 PDVVVV-----TNVEADHLDYFGSTEAY----IQVFDDFAARLSPGGLLVACLDDPGSAA 231

Query: 256 VMKRAHN---AGCRVLSVG----YQGKFIHLKKVCA-----------IHNKQQVTISVEG 297
           + +R       G RVL  G      G F  +  V             +    Q  ++ E 
Sbjct: 232 LAQRVAARGLPGVRVLGYGSAEDADGAFASVDGVEVGARLLSFEARDVGGVLQFQLAGEQ 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   +PG     NAL A       G D   +LE +     V  RF+F G    G R
Sbjct: 292 SPRTVRMGVPGRHMALNALAALLAAREAGADVDEILEGIAGFGGVHRRFQFTG-REHGVR 350

Query: 358 IYVDYAHTSNSLEMIL----------------KNIRTITSGRIIVVF 388
           ++ DYAH    +  +L                ++  ++ SG++IVVF
Sbjct: 351 VFDDYAHHPTEVRAVLGAAADLVRQPHEADRRESEDSVRSGKVIVVF 397


>gi|51246782|ref|YP_066666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase [Desulfotalea psychrophila LSv54]
 gi|50877819|emb|CAG37659.1| probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Desulfotalea psychrophila LSv54]
          Length = 478

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 110/279 (39%), Gaps = 32/279 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           L +TGT GK++  S +  +   + L  +F IG    +  F  + RL             Y
Sbjct: 120 LVITGTHGKTTTCSLLASVLYHAKLDPTFMIG--GIVREFNSNFRLGKGK---------Y 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID----YHQTQQAYFNAKMR 232
             ++G  + +          H    I +I    T+L  DH D      Q ++A+  AK  
Sbjct: 169 FVAEGDEYDTAFFDKESKFLHYRPQIAVI----TSLEFDHADIFADLEQIKRAF--AK-- 220

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV 291
            F +LLP +   I   D+    ++ + A  A C V   G    F   L K+ +       
Sbjct: 221 -FIQLLPPDGLLIANLDNP---DIAELAQAAPCPVEGYGLNSSFPWSLGKISSQSGYTHF 276

Query: 292 TISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  +G  +D F   LPG+    N+L    +   +G+D+  + + L     V  R E  G
Sbjct: 277 EVLKDGTLWDSFTVALPGQHNCLNSLAVCAIMHHLGLDTKTINQGLVAFGGVKRRQEIRG 336

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
             +    +  D+AH   ++   L  ++      R++ VF
Sbjct: 337 IEN-NITVIDDFAHHPTAVRETLAALKAAYPQNRLVTVF 374


>gi|27381715|ref|NP_773244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium japonicum USDA 110]
 gi|62900585|sp|Q89FU5|MURD_BRAJA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27354884|dbj|BAC51869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium
           japonicum USDA 110]
          Length = 466

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 22/153 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + + +G  +   G   T     +  R                
Sbjct: 117 VAITGTNGKSTTTALIAHLTKVAGYDTQMGGNIGTAILSLEPPR---------------- 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  HV +E SS+ +D      +    G   N+  DHID H T   Y   K RL   +
Sbjct: 161 --TGRVHV-IEMSSYQIDL--TPSLDPSVGILLNVSEDHIDRHGTIAHYAAVKERLVAGV 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
               + +I+  DD Y +++  R   AG  V+ +
Sbjct: 216 QAGGT-SIVGVDDGYCRDIADRLDRAGKNVVRI 247


>gi|315656830|ref|ZP_07909717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492785|gb|EFU82389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 483

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 103/260 (39%), Gaps = 30/260 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L   + + P +   R      +DSR +  G +FVA+ G   DGH F+     
Sbjct: 1   MIDMTLDALREAIGLEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVAR 60

Query: 66  QGAEAIVVS------------SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +G +  +VS            +A  L   +    S+    +    R  L    ++  G  
Sbjct: 61  RGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGT 120

Query: 114 P--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
              + ++ +TG++GK++     +Q+    G +   + P   ++SF  +N +  P  +  A
Sbjct: 121 GKLKLVIGITGSAGKTTTKDLTKQLLSTKGAT---VAP---VASF--NNEVGLPLTVLEA 172

Query: 172 K-ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             +  YL       + + AS  G   +  D   L       +G  H++ + + +A    K
Sbjct: 173 DVSTEYLV------LEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEK 226

Query: 231 MRLFEELLPKESPAIIYADD 250
             + E L P    AI+ ADD
Sbjct: 227 ATILENLGPS-GMAILNADD 245


>gi|304389587|ref|ZP_07371549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327140|gb|EFL94376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 483

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 103/260 (39%), Gaps = 30/260 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L   + + P +   R      +DSR +  G +FVA+ G   DGH F+     
Sbjct: 1   MIDMTLDALREAIGLEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVAR 60

Query: 66  QGAEAIVVS------------SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +G +  +VS            +A  L   +    S+    +    R  L    ++  G  
Sbjct: 61  RGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGT 120

Query: 114 P--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
              + ++ +TG++GK++     +Q+    G +   + P   ++SF  +N +  P  +  A
Sbjct: 121 GKLKLVIGITGSAGKTTTKDLTKQLLSTKGAT---VAP---VASF--NNEVGLPLTVLEA 172

Query: 172 K-ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             +  YL       + + AS  G   +  D   L       +G  H++ + + +A    K
Sbjct: 173 DVSTEYLV------LEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEK 226

Query: 231 MRLFEELLPKESPAIIYADD 250
             + E L P    AI+ ADD
Sbjct: 227 ATILENLGPS-GMAILNADD 245


>gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
 gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
          Length = 846

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 131/343 (38%), Gaps = 46/343 (13%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----------- 76
           I+ + +DSR +      +F A+   +  G  +IP    +G    V++             
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELR 83

Query: 77  --YSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+Q   A    N+ +     L+V N  K L   A     K    ++ +TG++GK+ V
Sbjct: 84  VESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIV 143

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             ++ Q+          + P   I  S  + ++++  P  ++    LS  +  G+    +
Sbjct: 144 KEWLHQL----------LSPDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGI 190

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246
                     R+  IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +I
Sbjct: 191 SEMGEMGALKRM--IKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKDCDVVI 242

Query: 247 YADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           Y  D    S  V K    A     S     + +++ +V    +   ++      D  F  
Sbjct: 243 YNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEMDNTFCI 302

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           P   +  + NAL     C+ +   +  + E + +L  +  R E
Sbjct: 303 PFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLE 345


>gi|293192326|ref|ZP_06609437.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           odontolyticus F0309]
 gi|292820241|gb|EFF79235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           odontolyticus F0309]
          Length = 481

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 25/137 (18%)

Query: 105 FASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
            A RL  + P      L VTGT+GK++    + +I + +G  + ++G   T  + A D+ 
Sbjct: 99  LAWRLQEEGPHAGRPWLVVTGTNGKTTTVGMLGEILRCAGAKAEEVGNIGTPITRAIDSD 158

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                                   +VE SS  L  H +  +  +A    N+  DH+D+H 
Sbjct: 159 AEV--------------------FAVELSSFQL--HTVRTVSPLASICLNVDADHLDWHG 196

Query: 222 TQQAYFNAKMRLFEELL 238
           + +AY   K R++E  +
Sbjct: 197 SVEAYAADKARVYENTI 213


>gi|288553797|ref|YP_003425732.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudofirmus OF4]
 gi|288544957|gb|ADC48840.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudofirmus OF4]
          Length = 432

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 114/308 (37%), Gaps = 70/308 (22%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS+AY  +D     R+    + VD    FL  F  +         +AVTG  GK+S  
Sbjct: 64  VIVSAAYG-EDHEEVARAKEIGIPVDQYPHFLGDFIQQF------TSVAVTGCHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +   +  +S+ IG  +         +    S  ++ +A  Y              
Sbjct: 117 GLLSHVLGSAFPTSYLIGDGT--------GKGEEDSKYFVFEACEYR------------- 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-D 249
                +H L+  K      TN+  DH DY +     F A    F E+  +   AI+   D
Sbjct: 156 -----RHFLN-YKPDYCIMTNIDFDHPDYFKDVDDVFEA----FSEMAMQVKKAIVACGD 205

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFD------ 301
           D Y + +     +A   V+  G+  Q  F            + V ++ +G  FD      
Sbjct: 206 DQYLQGI-----HANVPVVFYGFSEQNDF----------QARSVEVTDKGTKFDVYVRNN 250

Query: 302 ----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F  P  G   V NAL    LC    + + ++ EHL+    V  RF        G +
Sbjct: 251 LYGTFTIPGYGNHNVLNALAVIALCHYENVPAEVLKEHLKTFQGVKRRFT---EKKVGSQ 307

Query: 358 IYV-DYAH 364
           I + DYAH
Sbjct: 308 ILIDDYAH 315


>gi|160896918|ref|YP_001562500.1| UDP-N-acetylmuramate--L-alanine ligase [Delftia acidovorans SPH-1]
 gi|229486487|sp|A9BUK7|MURC_DELAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160362502|gb|ABX34115.1| UDP-N-acetylmuramate--alanine ligase [Delftia acidovorans SPH-1]
          Length = 477

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH++ +             F   +P    AI+  D    +E++ +          
Sbjct: 179 TNIDADHMETYGHDFGRLKGAFVDFLHRMPFYGRAIVCVDSPAVREILPQVARPVTTYGF 238

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A +A  R L+V  +   +H        N Q         D D +  LPGE  V NAL A 
Sbjct: 239 AEDAQVRALNVRAEAGSMHF--TVRRSNGQSY------PDLDVVLSLPGEHNVLNALSAV 290

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV--DYAH 364
            + + + I    +L   E    V  RF+  G    + GG   V  DY H
Sbjct: 291 AVAMELEISDDALLRAFESFKGVGRRFQRYGELAAADGGSFTVIDDYGH 339


>gi|168789615|ref|ZP_02814622.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
 gi|261226845|ref|ZP_05941126.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255249|ref|ZP_05947782.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|189370788|gb|EDU89204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
          Length = 438

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 46/240 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EG------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G      K+  F     G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKF----SGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|148980586|ref|ZP_01816133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
 gi|145961169|gb|EDK26485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
          Length = 438

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 61/246 (24%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V      + + +GL+   +G    I      + L   + +Y+ +  S+
Sbjct: 110 VVAITGSNGKSTVTDLTGVLAKAAGLN---VGVGGNIG-IPALDLLELDADLYVLELSSF 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-- 234
                     +E +S+         +KL A +F NL  DH+D +Q    Y  AK+R+F  
Sbjct: 166 ---------QLETTSN---------LKLAAAAFLNLSEDHMDRYQGMTDYREAKLRIFNN 207

Query: 235 ----------EELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                     +E  P ++ P + +  D    +    +   GC  L               
Sbjct: 208 AQCTIVNREDKETYPDQTMPLVTFGLD---NQEFGVSTIGGCEWL--------------- 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            + N + V  + +         L G   V NALV+  L   +GID    LE L+  + + 
Sbjct: 250 -VDNGKPVLTTQD-------LTLVGRHNVANALVSLALLKQVGIDYNKSLEALKAYNGLT 301

Query: 344 GRFEFV 349
            R + V
Sbjct: 302 HRCQVV 307


>gi|315937120|gb|ADU56127.1| hypothetical protein CA915-6 [uncultured organism CA915]
          Length = 447

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 105/245 (42%), Gaps = 42/245 (17%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           D R  + G +FVA  G   DGH F  QA   GA A++ S    L           P +VV
Sbjct: 32  DGREARPGGLFVAFDGEHVDGHDFAGQAGQAGAVAVLGSRPTVL-----------PTVVV 80

Query: 96  DN----TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT- 150
           D+     +   +   +RL  +    ++AVTG+ GK+S    +  +          + PT 
Sbjct: 81  DDVQAALQALAAHVLARL--RAGLTVIAVTGSQGKTSTKDQLGAVLA-------SVAPTI 131

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAG 207
           +T+++  ++N L  P        L+ L +   T   V    + H  D   L  +  L   
Sbjct: 132 ATVAN--RNNELGVP--------LTVLRAGPETRFLVLEMGARHTGDIAMLTNLYPLDVA 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H+    +++A   AK  L   L+P  + A++ ADD   +  + R+ + G  V
Sbjct: 182 VVLNVGTAHLGEFGSREAIGRAKGELVRGLVPGGT-AVLNADD--PRVALMRSLSDGP-V 237

Query: 268 LSVGY 272
           L+ GY
Sbjct: 238 LTFGY 242


>gi|254673378|emb|CBA08656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha275]
          Length = 210

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G     N + A  LC A+G+    +LEH++    +P R E +G   + G +++D + 
Sbjct: 35  PLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG--KKNGVVFIDDSK 92

Query: 365 TSN 367
            +N
Sbjct: 93  GTN 95


>gi|118594413|ref|ZP_01551760.1| UDP-N-acetylmuramate--L-alanine ligase [Methylophilales bacterium
           HTCC2181]
 gi|118440191|gb|EAV46818.1| UDP-N-acetylmuramate--L-alanine ligase [Methylophilales bacterium
           HTCC2181]
          Length = 457

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 102/266 (38%), Gaps = 35/266 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK+S  S +  I  +  L  +F IG    I+S   + +L     I++      
Sbjct: 108 IAVAGTHGKTSTTSLLASILSQGNLDPTFVIG--GRINSMKANAKLGA-GDIFV------ 158

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VEA         L+ I  I    TN+ RDH++ +Q       A    F  
Sbjct: 159 ----------VEADESDASFLHLNPINTIV---TNIDRDHLEAYQGDFERLKATYLDFIH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P  S   +  DD    E+ K   +    +++ G   +   ++    +H + ++   V 
Sbjct: 206 QVPFYSNVFLCVDD---DEINKIIPDIMRPIVTYGLSAQ-AQIQATSIVHFENKMNFVVH 261

Query: 297 GK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--- 348
            K      FD    LPG   V N L A  + +  G+    + + L     V  R++    
Sbjct: 262 DKYYKKIKFDININLPGIHYVNNTLAAIAVGLEFGVSIKNIQKALRDFEGVSRRYDVYRG 321

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILK 374
           +  N++   +  DY H    +  +L+
Sbjct: 322 IYKNNKNFIVVDDYGHHPTEIRAVLE 347


>gi|312149280|gb|ADQ29351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi N40]
          Length = 451

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IVAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               Y   K ++F   + + S  +I  D AY K   K
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYYKYFSK 231


>gi|301310866|ref|ZP_07216795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
 gi|300830929|gb|EFK61570.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
          Length = 445

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 98/261 (37%), Gaps = 46/261 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++       I + +G+    +G    + +         P  +Y+      
Sbjct: 105 MICITGSNGKTTTTMLTYHILKEAGV---DVGLAGNVGNSLALQVAEDPHAVYV------ 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y+   Q Y +AK R+ +
Sbjct: 156 ----------IELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQ 203

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               K+   I + DD   ++E+ KR   A        Y     H   V       QV I 
Sbjct: 204 N-QTKDDAFIFWNDDPIIAREIAKRHPKATL------YPFAETHENGVKGYTENNQVVIE 256

Query: 295 VEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                F     L  L G   +YN+L       A GI S +V  H EK+       +F G 
Sbjct: 257 TVNGTFTMEQDLLALTGTHNLYNSL-------ASGIASKIVDIHDEKIRASLS--DFTGV 307

Query: 352 NSRGGRIY----VDYAHTSNS 368
             R  ++     VDY + S +
Sbjct: 308 EHRLEKVLRVRGVDYINDSKA 328


>gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 836

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 30  INEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV----SSAYSLQDFSA 84
           I  +S DSR I     +FVA+ G   DGH F+ +A   GA+  +V       Y L+D   
Sbjct: 25  IKHISIDSRRIFSPSTLFVALKGQAHDGHAFVAEAAKSGAKYALVHQDWQPPYPLKDI-I 83

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +R N P+      + F +L  +    +    ++A+ G+ GK+ +   ++ +  +
Sbjct: 84  LLRVNDPL------KAFQALAKAYRQERTQCKVVAIGGSYGKTMLKDLLETMLAK 132


>gi|195977729|ref|YP_002122973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|226722945|sp|B4U1U3|MURD_STREM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195974434|gb|ACG61960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 452

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 132/321 (41%), Gaps = 56/321 (17%)

Query: 86  IRSNTPILV--VDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ---R 139
           IR + P++V  +D     L+ +  + L  + P  I+ +TG++GK++  + +  +     +
Sbjct: 82  IRYDNPMVVCALDKAISILTEVELAYLVSEAP--IIGITGSNGKTTTTTMIADVLNAGNQ 139

Query: 140 SGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYL---SSQGVTHVSVEASSHGLD 195
           S L +  IG P S ++  A      T   I + +  S+    + Q   H++V        
Sbjct: 140 SALLAGNIGFPASEVAQAA------TAKDILVMELSSFQLLGTEQFQPHIAV-------- 185

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                         TNL   H+DYH + + Y  AK R+   +  K+   ++ AD    K 
Sbjct: 186 -------------ITNLVPTHLDYHGSFEDYIAAKWRIQHRMTDKDY-LVLNADQELVKS 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + ++   A     S   +    +L        ++QV  + E         LPG   + NA
Sbjct: 232 LAQKT-KASPVFFSTKEKVDGAYLADGYLYFKEEQVMSAAE-------LGLPGRHNIENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL-- 373
           L    +    GI + ++ + L     V  R + VGT ++     V + + S S  ++   
Sbjct: 284 LATIAVAKLRGISNQVISKTLSHFSGVKHRLQLVGTLNQ-----VTFYNDSKSTNILACQ 338

Query: 374 KNIRTITSGRIIVVFGCGGDR 394
           K +    + R+I++ G G DR
Sbjct: 339 KALSGFDNSRVILIAG-GLDR 358


>gi|319776623|ref|YP_004139111.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|329124136|ref|ZP_08252683.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
 gi|317451214|emb|CBY87447.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|327467561|gb|EGF13059.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
          Length = 437

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 40/237 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGV---KVGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 148 LNEDCELYV-LELSSFQLETTY--SLKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYHN 204

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +L  E       ++  +K  +  A N      S  Y  K  + K+   +  K +V 
Sbjct: 205 AKVGVLNNEDRLTFGENENQAKHTVSFAEN------SADYWLKTENGKQYLMV--KDEVI 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  E         L G     N L A  L  AIGI+   +   L     +  RF+ V
Sbjct: 257 LPCEEA------TLVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLV 307


>gi|269215876|ref|ZP_06159730.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
 gi|269130826|gb|EEZ61902.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
          Length = 463

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 23/190 (12%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++        A  + F   +P +   ++  +D    E+   A + G RV+S
Sbjct: 182 TNVEADHLDHYVGGIDEIRATFKTFMASVPADGALVVCGEDPSLAEL---AESTGRRVVS 238

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-----------LPGEFQVYNALVA 318
            G+          C +      T  V    F   FP            PG     NA   
Sbjct: 239 YGFS-------PACDVRVSDYATHGVS-STFTLSFPDGTVVESGLAKNPGRHNALNAAGV 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+  A+G+D A     +     V  RF+  G  + G  +  DYAH    +   L    +
Sbjct: 291 LGVIWALGLDVASASAGIASYSGVRRRFDLKG-EAAGVAVVDDYAHHPTEIAATLAAATS 349

Query: 379 ITSGRIIVVF 388
           +   R+ V+F
Sbjct: 350 LDFNRVHVIF 359


>gi|291278995|ref|YP_003495830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753697|dbj|BAI80074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
          Length = 453

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F  LI+ +S   +++     N V  +S+ ++ G IF+A+ G   DG+ F  +A  +GA  
Sbjct: 10  FKNLIDYISPTIVEY-----NNVVINSKEVKKGDIFLALKGTNVDGNSFFKEAYERGAIL 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            V  + Y      A+I     +LV D+     S    +L     + + A+TG+ GK++  
Sbjct: 65  TVFDNPYFYN--KASI---NKVLVEDSFNAIKSFGIWKLKNNFAKRV-AITGSVGKTTTK 118

Query: 131 SFVQQICQR 139
             + +I  +
Sbjct: 119 KLLYEIFSK 127


>gi|149910623|ref|ZP_01899261.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
 gi|149806351|gb|EDM66326.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
          Length = 478

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R I+AG +F+A+ G+  D + F+  A  +GA A +V+   ++         +
Sbjct: 24  ITAVSTDTRTIKAGDLFIALSGDNFDANRFVATAAEEGAIAAIVTKKQAV---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            P ++V ++R  L L    +       + A+TG++GK++    +  I +
Sbjct: 75  IPQIIVKDSRIALGLLGKMVREHVAPKVAALTGSNGKTTTKEMLAAILK 123


>gi|293417964|ref|ZP_06660586.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
 gi|291430682|gb|EFF03680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
          Length = 438

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    + G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKISGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|269958264|ref|YP_003328051.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma centrale str.
           Israel]
 gi|269848093|gb|ACZ48737.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma centrale str.
           Israel]
          Length = 472

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   V NAL A      +G+D + +   LE    V  RFE + ++ RG     DYA
Sbjct: 273 LPVPGRHNVENALAAVAAVKRLGVDCSCIKSGLENFMGVRRRFEVI-SSVRGVTFVDDYA 331

Query: 364 HTSNSLEMILKNIRTITS-GRII 385
           H    ++      +   + GR+I
Sbjct: 332 HHPTEIDATRNTAKLFAAGGRVI 354


>gi|157147488|ref|YP_001454807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           koseri ATCC BAA-895]
 gi|157084693|gb|ABV14371.1| hypothetical protein CKO_03287 [Citrobacter koseri ATCC BAA-895]
          Length = 438

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I   A          + L  A   
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIGLPA----------LMLLDAARE 153

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L    ++   +E +S          ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 154 LYVLELSSFQLETTSS---------LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAKVCVVNADDALTMPV----RGADARCVSFGVNMGDYHLNR 242


>gi|149918773|ref|ZP_01907260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
 gi|149820374|gb|EDM79790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
          Length = 482

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I     DSR    G +FV IV  + DGH FIP A+A GA A +V          A   
Sbjct: 22  RPIQAAFIDSRTPTPGGLFVPIVAAR-DGHDFIPAALAAGASATLVGPGRG----EAVPE 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            +  ++ V +T + L+  A     +    ++A+TG++GK++  +FV+
Sbjct: 77  GDFTVVEVGDTLEGLTQLARDARAQLDGPVVAITGSNGKTTTRAFVE 123


>gi|145296122|ref|YP_001138943.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium glutamicum R]
 gi|140846042|dbj|BAF55041.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 472

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           AG   NL  DHID+H + + Y  AKM +      K   AII ADD Y  ++   A  +G 
Sbjct: 189 AGVVLNLAEDHIDWHGSMRDYALAKMEVL-----KGKVAIIGADDPYLVQLTSEADLSGL 243


>gi|229543492|ref|ZP_04432552.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
 gi|229327912|gb|EEN93587.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
          Length = 437

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 102/276 (36%), Gaps = 44/276 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +S+ IG  +         +    +  ++ +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLAHVMHEIKPTSYLIGDGT--------GKGVPGAEYFVFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H    I       TN+  DH DY+      F+A    F+E+
Sbjct: 155 ------------RRHFLSYHPDYAI------MTNIDFDHPDYYANIDDVFSA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
             +    II Y DD   +++      A   V+  G++ G     + +       +  + V
Sbjct: 193 ALQVKKGIIAYGDDEQLQKI-----QAKVPVVFYGFEEGNDFQARNIVTEPQGTKFDVVV 247

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +  F  P  G   V NAL    LC   GI+   V  HL+  H V  RF        
Sbjct: 248 RNNFYGTFEIPSFGNHNVLNALGVIALCQYEGIEKEAVETHLKTFHGVKRRFT---EKEI 304

Query: 355 GGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVF 388
           G +I + DYAH    ++  +   R     R ++ VF
Sbjct: 305 GTQIIIDDYAHHPTEIKATIDAARKKYPERELVAVF 340


>gi|49483980|ref|YP_041204.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425853|ref|ZP_05602277.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428520|ref|ZP_05604918.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431153|ref|ZP_05607530.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433835|ref|ZP_05610193.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436752|ref|ZP_05612796.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904309|ref|ZP_06312197.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906134|ref|ZP_06313989.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909051|ref|ZP_06316869.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911365|ref|ZP_06319167.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914534|ref|ZP_06322320.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919502|ref|ZP_06327237.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924880|ref|ZP_06332546.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958488|ref|ZP_06375939.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503612|ref|ZP_06667459.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293537169|ref|ZP_06671849.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428310|ref|ZP_06820939.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|56749227|sp|Q6GFW8|MURC_STAAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49242109|emb|CAG40809.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271547|gb|EEV03693.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275361|gb|EEV06848.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278101|gb|EEV08749.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281928|gb|EEV12065.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284103|gb|EEV14226.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313246|gb|EFB43642.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317312|gb|EFB47686.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321715|gb|EFB52040.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325060|gb|EFB55370.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327315|gb|EFB57610.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331426|gb|EFB60940.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595927|gb|EFC00891.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790637|gb|EFC29454.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920014|gb|EFD97082.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095278|gb|EFE25543.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|295127710|gb|EFG57347.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315195646|gb|EFU26033.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 437

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+ +   I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKESDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|195941718|ref|ZP_03087100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi 80a]
          Length = 451

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +SLF   ++ K+P  I+AVTGT GKS++ S + Q   +      ++G    +S  +  ++
Sbjct: 102 ISLFL--MFNKNP--IVAVTGTKGKSTLVSLLYQ-ALKEKYPGVKLGGNIGVSPLSFFDQ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L   SP+ L                 E SS  L    L+    I    TN+  DH +Y+ 
Sbjct: 157 LDGKSPLIL-----------------ELSSWQL--QSLENFNPIISIITNVYNDHQNYYL 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               Y   K ++F   + + S  +I  D AY K   K
Sbjct: 198 NFDDYIIDKSKIF---VNQTSGIVIIQDQAYYKYFSK 231


>gi|217974677|ref|YP_002359428.1| UDP-N-acetylmuramate [Shewanella baltica OS223]
 gi|217499812|gb|ACK48005.1| UDP-N-acetylmuramate [Shewanella baltica OS223]
          Length = 463

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 112/287 (39%), Gaps = 46/287 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV+GT GK+S +S +  I    G    F IG      +F    RL   +  ++ +A  
Sbjct: 108 VLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIG--GVPQNFGVSARLGK-TAFFVVEADE 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ---TQQAYFNAKMR 232
           Y S+        +  S  +  H    +        NL  DH D        Q  FN  +R
Sbjct: 165 YDSA------FFDKRSKFVHYHPRTLV------INNLEFDHADIFADLAAIQKQFNHLVR 212

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV---------LSVGYQGKFIHLKKVC 283
                +P E   +  AD    K+ ++     GC            + G+ GK   L   C
Sbjct: 213 T----VPGEGKIVWPADSHAVKQTIEM----GCWSEQETYHLAESTSGWYGK--ALSDDC 262

Query: 284 AIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 +  +  +G+    L + L G+  + NA++A      +G+  +  +E L K    
Sbjct: 263 -----HRFEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPP 317

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             R E +GT   G  +Y D+AH   ++   LK +R  +   +I VV 
Sbjct: 318 KRRLELLGT-VNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVL 363


>gi|71909109|ref|YP_286696.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
 gi|109892702|sp|Q47AA5|MURC_DECAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71848730|gb|AAZ48226.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
          Length = 463

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 132/318 (41%), Gaps = 63/318 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+A+V+S+A         ++++ P ++    RK   +  +++  +    ++ +A+ GT 
Sbjct: 64  GADAVVISTA---------VKADNPEVIAARERKIPVVPRAQMLAELMRLKSGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S V  I    G+  +F IG    +++   + RL +     +A+A     S+L  
Sbjct: 115 GKTTTTSLVTSILAEGGIDPTFVIG--GRLNAAGANARLGS-GDFLVAEADESDASFLFL 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLF 234
             V  V                        TN+  DH+     D+ + + A+ +     F
Sbjct: 172 SPVISV-----------------------VTNIDADHMETYGHDFERLKSAFVD-----F 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV-T 292
              LP    A++  DDA  ++++ R      ++++ G   +   H + + A + + +   
Sbjct: 204 LNRLPFYGVAVVCGDDANIRDILPRVPK---QIITYGLSNECNFHAENIVADNGQMRFDC 260

Query: 293 ISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + V G        L  PG   V NAL A  +   + +  A +++ L +   V  RF+  G
Sbjct: 261 VRVNGTTSRLSITLNTPGMHNVLNALAAIAVATEVQVSDAAIVKALAEFKGVGRRFQRYG 320

Query: 351 TNS--RGGRIYV--DYAH 364
             +   GG   +  DY H
Sbjct: 321 EVALPAGGSFTLVDDYGH 338


>gi|19553360|ref|NP_601362.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62390999|ref|YP_226401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326338|emb|CAF20500.1| UDP-N-ACETYLMURAMOYLALANINE D-GLUTAMATE LIGASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 472

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           AG   NL  DHID+H + + Y  AKM +      K   AII ADD Y  ++   A  +G 
Sbjct: 189 AGVVLNLAEDHIDWHGSMRDYALAKMEVL-----KGKVAIIGADDPYLVQLTSEADLSGL 243


>gi|323694570|ref|ZP_08108736.1| hypothetical protein HMPREF9475_03600 [Clostridium symbiosum
           WAL-14673]
 gi|323501338|gb|EGB17234.1| hypothetical protein HMPREF9475_03600 [Clostridium symbiosum
           WAL-14673]
          Length = 455

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 130/344 (37%), Gaps = 64/344 (18%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V+  R+ L +       +    I+ + GT+GK SV +F+  I + SG  SF +  +  +
Sbjct: 31  TVETVREMLKILG---ISQEDMKIVHIAGTNGKGSVCAFLSSILRESG-HSFAVFTSPHL 86

Query: 154 SS----FAQDNRLTTPSPIYLA-----KALSYLSSQGVTH------------VSVEAS-- 190
            S    FA + R         A      AL      G  H            V V+ S  
Sbjct: 87  LSIRERFAFNGRDVEDELFLFAFRKVCDALEAFGEIGAGHPSYFEFLFLMFMVMVKESPC 146

Query: 191 -----SHGLDQHRLDGIKLI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                  GL   RLD    +    A   T++  DH++Y     +    +      ++   
Sbjct: 147 DYVILETGLGG-RLDATNCVEHPLAAVITSVSLDHMEYLGDTVSKIAGEK---AGIIKAG 202

Query: 242 SPAIIYADDAYSKEVMK-RAHNAGCRVLSV---GYQGKFI---HLKKVCAIHNKQQVTIS 294
            P I     A +  V++ +A   G R   V    Y G  +   HLK +    NK      
Sbjct: 203 VPVIFDNTSAEASSVIRAKAEEMGSRAWPVDNTSYSGLELDGDHLKLLA--KNKDG---- 256

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +++    P   E+Q  N+++A      +GI   ++   + +  V PGR E +  +  
Sbjct: 257 --DREYRLDIPFAAEYQAVNSMLAFHTAELMGIGGDVICRGIGQA-VWPGRMEQIMKD-- 311

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRD 395
              +Y+D AH    +    K  RTI +   GR I+VF    D++
Sbjct: 312 ---VYLDGAHNEGGIREFAKAARTIAARHGGRKILVFAVVSDKE 352


>gi|297590727|ref|ZP_06949365.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|297575613|gb|EFH94329.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437804|gb|ADQ76875.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 444

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 170 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 199

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+ +   I+ + +          + V
Sbjct: 200 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKESDDIYAQNIQITDKGTAFDVYV 254

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 255 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 312

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 313 NQVIVDDYAHHPREISATIETAR 335


>gi|254449007|ref|ZP_05062461.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
 gi|198261401|gb|EDY85692.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
          Length = 468

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 110/285 (38%), Gaps = 48/285 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  S    +    GL  +F IG    ++S   + RL +     +A+A   
Sbjct: 107 IAVAGTHGKTTTTSLTASLLAEGGLDPTFVIG--GKLNSAGTNARLGS-GDYLVAEADES 163

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q V  V                        TN+  DH+  +            
Sbjct: 164 DASFLILQPVMSV-----------------------VTNIEPDHLATYGGSFEKLKDTFV 200

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DD   +E++ R     C+ L+ G Q        + AI+ + +  
Sbjct: 201 EFLHHLPFYGLAVMCVDDPVVREILPRVT---CQTLTYGIQ----EGADIQAINLRFEGA 253

Query: 293 ISV------EGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            SV       GK  D +   +PGE  V NAL A  +   +G+    +   L+    +  R
Sbjct: 254 TSVFDVALPNGKRLDGITLNMPGEHNVQNALAALAIAHELGVSGDSISSALQSFGGIGRR 313

Query: 346 FEFVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
           F+ +G    G G + +  DY H  + +   L+  R     R +VV
Sbjct: 314 FQLLGDIQCGNGSVTLVDDYGHHPSEMSATLRAARNAWPDRRLVV 358


>gi|319789776|ref|YP_004151409.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
 gi|317114278|gb|ADU96768.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
          Length = 446

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 105/281 (37%), Gaps = 44/281 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S +  I   +G S     PT                 I +   L +L
Sbjct: 103 IAVGGTHGKTTTSSMIATILHSAGTS-----PT-----------------ILVGGRLPFL 140

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQ-------AYFN 228
                   S +      D+     +KL       TN+  DH+D++ + +       A+ N
Sbjct: 141 GGDNAALGSGKWIVIEADESDGTFLKLTPTLSVITNVDNDHLDFYGSPEEIDKAFTAFAN 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                 +  L  E P +       S +V KR         + G++G     ++V  +   
Sbjct: 201 RVAFYGKVFLCIECPRV----RKISPKVYKRKE-------TYGFEGADFTAEEVTQVGLS 249

Query: 289 QQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              T+  +GK    +   +PG+  V NAL A  + +  G+      E L +      R E
Sbjct: 250 SIFTVRYKGKKLGKVRLNVPGKHNVLNALGAIAVALETGVPFKEAAEALGQFRNASRRME 309

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             GT  +G   + DY H    ++   + I++    R +VV 
Sbjct: 310 LKGT-VKGITFFDDYGHHPTEIKASYEAIKSAFPNRRVVVL 349


>gi|297571249|ref|YP_003697023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931596|gb|ADH92404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 470

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++D+R I  G +FVAI G + DG+ F   A+  GA A++ +   +     A     
Sbjct: 26  VTSIATDNRTISGGELFVAIAGERVDGNRFAQAALDAGAVAVLTADPAAACATGAAPER- 84

Query: 90  TPILVVDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             ++ VD+    L   A       R  G     ++ VTG+ GK++    +  +  + G
Sbjct: 85  --VIAVDDPIVALGRLAHEQAHIVRKCGAENFQVIGVTGSVGKTTTKDLLAHLLGQRG 140


>gi|253732390|ref|ZP_04866555.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|297207546|ref|ZP_06923982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300911629|ref|ZP_07129073.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|253723912|gb|EES92641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|296887882|gb|EFH26779.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300887050|gb|EFK82251.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 444

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 170 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 199

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 200 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 254

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 255 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 312

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 313 NQVIVDDYAHHPREISATIETAR 335


>gi|47566647|ref|ZP_00237469.1| FolC family protein [Bacillus cereus G9241]
 gi|47556677|gb|EAL15009.1| FolC family protein [Bacillus cereus G9241]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 39/197 (19%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K + +      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTD---DNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAI 449
               ++G++   +AD  I T    D   S D      K  ++++          N  EAI
Sbjct: 352 --HNMVGQLE-TIADETIFTTFAFDRAISADKLASYSKKESKLVFE--------NWKEAI 400

Query: 450 RTAIEMLNKQDVLVVAG 466
            T +EML + DV ++ G
Sbjct: 401 DTKVEMLGENDVFIITG 417


>gi|297538642|ref|YP_003674411.1| cyanophycin synthetase [Methylotenera sp. 301]
 gi|297257989|gb|ADI29834.1| cyanophycin synthetase [Methylotenera sp. 301]
          Length = 856

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 31/312 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++FA+   G+ P  ++ V GT+GK++    +  I    GL   ++G T++   + +  R+
Sbjct: 460 TMFAAGDDGRIP--LVTVAGTNGKTTTVRLISHILTCQGL---RVGMTNSDGVYIEGRRI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219
            T        A + L    V    +E +  G+ +  L   +      TN+G  DH+   Y
Sbjct: 515 DTGDCSGPKSARNVLMHPDVDAAVLETARGGVLREGLAFDRCNVAVVTNIGMGDHLGLSY 574

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--- 276
             T +     K  + + + P +  A++ A D  +  +      A   V      G+    
Sbjct: 575 ITTVEDLAVVKRVVVQNVAP-DGMAVLNAADPMTANMAAACPGA---VTFFAQNGQLPVI 630

Query: 277 ----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE------FQVYNALVAAGLCIAIG 326
                H  +V  +   Q V      +    L  +P        FQV NA+ A     A+ 
Sbjct: 631 ATHRAHGHRVVYVEGGQIVAAQQNNEHRIDLAKIPVTRNGTIGFQVENAMAAIASAWALK 690

Query: 327 IDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           ++  ++L+ +          PGRF F     RG  +  DY H  +++  ++  I  I + 
Sbjct: 691 VEWDVILQGVSTFVNDAQTAPGRFNFF--EYRGASVIADYGHNPDAIVALVSAIENIPAK 748

Query: 383 RIIVVFGCGGDR 394
           + +VV    GDR
Sbjct: 749 KRMVVISGAGDR 760


>gi|269302690|gb|ACZ32790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae LPCoLN]
          Length = 417

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 187 VEASSHGLDQHRLDGIKLIAGS-FTNLGRDHIDYHQTQQAYFNAKMRL 233
           VE SS  L     + I  ++GS F N  R+H+DYH+   AYF+AK+R+
Sbjct: 152 VEISSFQLATQE-EHIPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRI 198


>gi|302533953|ref|ZP_07286295.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
 gi|302442848|gb|EFL14664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
          Length = 476

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E      + A
Sbjct: 165 LAVELSSYQL--HWAPSVRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE----GNTIA 218

Query: 245 IIY--ADDAYSKEVMKRAHNAGCRVL 268
            +Y  AD A  + V +     GCR +
Sbjct: 219 CVYNVADPATERLVEEADVEEGCRAI 244


>gi|312109889|ref|YP_003988205.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y4.1MC1]
 gi|311214990|gb|ADP73594.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y4.1MC1]
          Length = 434

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 96/283 (33%), Gaps = 63/283 (22%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G+ GK+S    +  + Q +  +S+ IG   T             +  Y    LSY 
Sbjct: 104 IAVAGSHGKTSTTGLLAHVMQGAHSTSYLIG-DGTGKGIEGSKYFVFEACEYRRHFLSYF 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY       F+A    F+E+
Sbjct: 163 PDYAIM--------------------------TNIDFDHPDYFANIDDVFSA----FQEM 192

Query: 238 LPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTIS 294
             +    II   DD Y +++      A   VL  G+     F            + V  +
Sbjct: 193 ALQVKKGIIACGDDEYLQKI-----KAKVPVLFYGFGDDNDF----------QARNVVKT 237

Query: 295 VEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            EG  FD          F  P  G+  V NAL    LC    ID  ++ E L+    V  
Sbjct: 238 TEGTSFDVFVRNTFFASFEIPRFGDHNVLNALAVIALCHYEEIDVHIIQERLKTFQGVKR 297

Query: 345 RFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIV 386
           RF        G +I + DYAH    +   +   R    GR IV
Sbjct: 298 RF---SEKVLGNQILIDDYAHHPREIIATIDAARQKYPGREIV 337


>gi|254796835|ref|YP_003081672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
 gi|254590075|gb|ACT69437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
          Length = 326

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S D   +  G IFV       D H  I  A   GA AI+          +A  +   PI+
Sbjct: 32  SMDYEKVGKGEIFVTADAKNHDTHHLIETAYLNGALAIITKKD------TACPKVPIPII 85

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            VD+  + +   A+ L   +   ++ +TG+SGK+   + +  + +  G + + 
Sbjct: 86  KVDDPLRAMEKLAAILIRNYQPIVIGITGSSGKTLTKNLIVTLLKNYGKTCYN 138


>gi|291301480|ref|YP_003512758.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570700|gb|ADD43665.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 454

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 22/130 (16%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A RL        LA+TGT+GK++  + +  I   +GL +  +G   T            
Sbjct: 94  LAWRLRPADAAPWLAITGTNGKTTAVTMLASILTAAGLKTAALGNIGT------------ 141

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
             P+  A    Y        ++VE SS  L  H    +    G+  NL  DH+ +H    
Sbjct: 142 --PLVDAVTADY------DVLAVELSSQQL--HWSKQLSPRVGALLNLADDHLSWHGDFD 191

Query: 225 AYFNAKMRLF 234
           AY +AK  ++
Sbjct: 192 AYSHAKTAIW 201


>gi|239826521|ref|YP_002949145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. WCH70]
 gi|259509789|sp|C5D8M2|MURD_GEOSW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|239806814|gb|ACS23879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           WCH70]
          Length = 451

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 10/159 (6%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+DYH T++AY  AK  +F+     E  A+I ADD    ++ +  H       + 
Sbjct: 188 NIFDAHLDYHGTKEAYAQAKANIFKN-QTNEDYAVINADDELVMQLAENIHAQKVAFSAT 246

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G+  ++       N + V    +         LPG+  + N L A  +    G+D+ 
Sbjct: 247 KVLGRGAYINNGFIYWNDEAVIAVAD-------IVLPGKHNLENILAAVAVAKLAGVDNK 299

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            + + L     V  R ++V T    GR + + +  +N L
Sbjct: 300 SIYQVLTTFTGVKHRLQYVATID--GRKFFNDSKATNIL 336


>gi|332305226|ref|YP_004433077.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172555|gb|AEE21809.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 484

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 115/292 (39%), Gaps = 63/292 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++  S +  I  ++ L  +F IG    ++S   + RL + S   +A+A   
Sbjct: 120 IAIAGTHGKTTTTSLIATIFAQAELDPTFVIG--GLLNSAGTNARLGS-SQYLIAEADE- 175

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKM 231
            S     H                 ++ +    TN+  DH+     D+ + Q  Y +   
Sbjct: 176 -SDASFVH-----------------LQPMVSVVTNIEPDHMETYQGDFDKMQDTYID--- 214

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSVGY---QGKFIH 278
             F   LP    A++  DD    E++ R          + NA  R  +V +   Q +F  
Sbjct: 215 --FLHNLPFYGLAVLCIDDPVITELLPRIKRKYLTYGYSENADVRATNVKHRFNQSEFTL 272

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++K    H+  QVT++            PG+  V N+L A  +     I  + +   L  
Sbjct: 273 IRK---DHDDIQVTVNA-----------PGKHNVLNSLAAIAVATDENIADSAIKTALAN 318

Query: 339 LHVVPGRFEFVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387
              +  RFE +G  + G G + +  DY H    +E  +   R     R +V+
Sbjct: 319 FSGIGRRFEMLGEFATGDGDVLLVDDYGHHPTEVEATIAVARNNWPDRRLVM 370


>gi|304386670|ref|ZP_07368952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339255|gb|EFM05333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 452

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M    + ++ + +DSR I+AG +F A+ G + D H F+   +A        +   S +D 
Sbjct: 17  MPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAAAVVVSREDC 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            A   +    L VD+T   L + A          +  +TG+ GK++V   +  + +R
Sbjct: 73  VAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRR 125


>gi|189464540|ref|ZP_03013325.1| hypothetical protein BACINT_00882 [Bacteroides intestinalis DSM
           17393]
 gi|189438330|gb|EDV07315.1| hypothetical protein BACINT_00882 [Bacteroides intestinalis DSM
           17393]
          Length = 459

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 137/359 (38%), Gaps = 52/359 (14%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +G T+ +   +++             
Sbjct: 110 HNSKGLCVAGTHGKTTTSTMTAHLLYQS-----HVGCTAFLGGISKN------------Y 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L     +    T    DH+D + T++AY  +  R
Sbjct: 153 DTNLLLSQSSPYTVIEADEFDRSFHWLSPYMSV---ITATDPDHLDIYGTEEAYLES-FR 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II+ D A   +V      AG +V S        H + +  I N +   
Sbjct: 209 HYTTLIQSGGALIIHKDIALKPDV-----QAGVKVYSYARTEGDFHAENI-RIGNGEIFI 262

Query: 293 --ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I+ + +  D    +P    + N + A  L    G+    + + +     V  RF+F  
Sbjct: 263 DFIAPDTRINDIQLGVPVSINIENGVAAMALAHLNGVTDEEIKQGMASFRGVDRRFDFKV 322

Query: 351 TNSRGGRIYV-DYAHTSNSLEMILKNIRTI-TSGRIIVVFG---CGGDRDQGKRPIMGKI 405
            N +   +++ DYAH    +   +K+IR +    +I  +F        RD  K       
Sbjct: 323 KNDK--VVFLSDYAHHPAEIAQSVKSIRDLYQDKKITAIFQPHLYTRTRDFYKE---FAN 377

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE--MLNKQDVL 462
           +L L D  I+ D  P  E P          IPG +      + +R  IE  M  K+D+L
Sbjct: 378 SLSLLDEVILVDIYPAREQP----------IPG-VTSQLIYDNLRPGIEKCMCKKEDIL 425


>gi|91203776|emb|CAJ71429.1| similar to UDP-N-acetylmuramate:L-alanine ligase MurC [Candidatus
           Kuenenia stuttgartiensis]
          Length = 471

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 131/333 (39%), Gaps = 53/333 (15%)

Query: 63  AIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            I +  + ++VSSA   Q  D    +  N  I    N      +F ++ +G      +AV
Sbjct: 73  GIKETTDVVIVSSAIEEQNPDIKKALSLNKKITTRSNI--LAEMFNTK-FG------IAV 123

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT+GK++V+S V  +   +G+S     PT  +    + N LT   P       S +   
Sbjct: 124 GGTNGKTTVSSMVGYVLDHAGMS-----PTIIVGGCIK-NYLTPDFPGNAKVGDSDI--- 174

Query: 181 GVTHVSVEA-SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V++EA  S G   +    I +I    TN+ +DH               +LFE    
Sbjct: 175 ----VAIEADESDGSIVNYTPKISII----TNMSKDHKPIESIS--------KLFETFSQ 218

Query: 240 KESPAIIYADDAYS-KEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +I  DD    K++  R  N    G R  +  Y    I+  + C        T  +
Sbjct: 219 NTRDLLIINDDCPELKKIPFRHKNTITFGLRKSADIYASNIIN--RPCL------STFDI 270

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+ F+    LPG   V NAL A  +   + I    +   L +   V  R + +G    G
Sbjct: 271 NGQSFE--LKLPGIHNVSNALAAISVARHMNIKDNEIAAALYEYKGVQRRMDNIG-EYNG 327

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            ++  D+AH    +   ++ ++ I   R+I VF
Sbjct: 328 IKVIDDFAHNPEKIAAAIRAVK-IGGNRVIAVF 359


>gi|15618810|ref|NP_225096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae CWL029]
 gi|16752135|ref|NP_445502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae AR39]
 gi|33242264|ref|NP_877205.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae TW-183]
 gi|30316148|sp|Q9Z705|MURD_CHLPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4377221|gb|AAD19039.1| Muramoylalanine-Glutamate Ligase [Chlamydophila pneumoniae CWL029]
 gi|7189877|gb|AAF38745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae AR39]
 gi|33236775|gb|AAP98862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae TW-183]
          Length = 417

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 187 VEASSHGLDQHRLDGIKLIAGS-FTNLGRDHIDYHQTQQAYFNAKMRL 233
           VE SS  L     + I  ++GS F N  R+H+DYH+   AYF+AK+R+
Sbjct: 152 VEISSFQLATQE-EHIPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRI 198


>gi|15924730|ref|NP_372264.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927317|ref|NP_374850.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus N315]
 gi|21283412|ref|NP_646500.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486565|ref|YP_043786.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|148268218|ref|YP_001247161.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394286|ref|YP_001316961.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980057|ref|YP_001442316.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|255006526|ref|ZP_05145127.2| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257794123|ref|ZP_05643102.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781]
 gi|258415827|ref|ZP_05682098.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763]
 gi|258420656|ref|ZP_05683595.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719]
 gi|258438306|ref|ZP_05689590.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299]
 gi|258443764|ref|ZP_05692103.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115]
 gi|258445975|ref|ZP_05694151.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300]
 gi|258448298|ref|ZP_05696425.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224]
 gi|258454175|ref|ZP_05702146.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937]
 gi|269203378|ref|YP_003282647.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893234|ref|ZP_06301468.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117]
 gi|282927869|ref|ZP_06335480.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102]
 gi|295406051|ref|ZP_06815859.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819]
 gi|296276768|ref|ZP_06859275.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245024|ref|ZP_06928901.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796]
 gi|54037858|sp|P65475|MURC_STAAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54037859|sp|P65476|MURC_STAAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041508|sp|P65474|MURC_STAAM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56749192|sp|Q6G8I7|MURC_STAAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224735|sp|A7X3H5|MURC_STAA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082503|sp|A6U2K6|MURC_STAA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082504|sp|A5ITR2|MURC_STAA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13701535|dbj|BAB42829.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247512|dbj|BAB57902.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204853|dbj|BAB95548.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49245008|emb|CAG43469.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147741287|gb|ABQ49585.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946738|gb|ABR52674.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722192|dbj|BAF78609.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257788095|gb|EEV26435.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781]
 gi|257839420|gb|EEV63893.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763]
 gi|257843260|gb|EEV67670.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719]
 gi|257848350|gb|EEV72341.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299]
 gi|257851170|gb|EEV75113.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115]
 gi|257855217|gb|EEV78156.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300]
 gi|257858537|gb|EEV81413.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224]
 gi|257863627|gb|EEV86384.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937]
 gi|262075668|gb|ACY11641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590379|gb|EFB95458.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102]
 gi|282764552|gb|EFC04678.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117]
 gi|285817422|gb|ADC37909.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus
           04-02981]
 gi|294969048|gb|EFG45069.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819]
 gi|297178104|gb|EFH37352.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796]
 gi|302333404|gb|ADL23597.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|312830118|emb|CBX34960.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130621|gb|EFT86607.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329727526|gb|EGG63982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329733180|gb|EGG69517.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 437

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|323439606|gb|EGA97326.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O11]
          Length = 437

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|306829827|ref|ZP_07463014.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus mitis ATCC
           6249]
 gi|304427838|gb|EFM30931.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus mitis ATCC
           6249]
          Length = 444

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITANAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTFGHHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|294787902|ref|ZP_06753146.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
 gi|294484195|gb|EFG31878.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
          Length = 470

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 118/311 (37%), Gaps = 43/311 (13%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGA+ +V S+A      +  A +  + P++     R  +     R      +N +A+ GT
Sbjct: 63  QGAQVVVTSTAIRADNPEVLAALEQHIPVI----PRAMMLAELMRF-----KNGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S    +   +GL      PT     F    +LT       A   + L S    
Sbjct: 114 HGKTTTTSLTASVLGAAGLD-----PT-----FVIGGKLTA------AGTNAKLGSG--N 155

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++  EA         L  +  +    TN+  DH+D +  +          F   +P    
Sbjct: 156 YIVAEADESDASFLYLSPVFTVV---TNIDEDHMDTYDHKIDKLYQAFTDFIHRMPFYGK 212

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---- 299
           A +  D A+ + ++       C   S+  +   I+   + AI ++ + T  +  +     
Sbjct: 213 AFLCVDSAHVRNILPEIKRPYC-TYSISDETADIYATNILAIGSQMKFTAHIRQQKNNEP 271

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RG 355
             FD +  +PG   V NAL + G+ +   +    +   L     V  RF+  G  +  +G
Sbjct: 272 LVFDVVLNIPGVHNVCNALASIGVALECKVPVDAIQAGLAGFSGVGRRFQSYGEMNLPQG 331

Query: 356 GRIYV--DYAH 364
           G+  V  DY H
Sbjct: 332 GKALVIDDYGH 342


>gi|255262234|ref|ZP_05341576.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
 gi|255104569|gb|EET47243.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
          Length = 466

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           + P+PG+  V NAL A  +   +G+ S  +   LE    V  RF  VG    G  I  DY
Sbjct: 280 MLPMPGDHNVSNALAAVAVSRHLGMKSEEIKTALENFGGVNRRFTRVG-KVNGVTIIDDY 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV 387
           AH    +   LK  R    GR+I V
Sbjct: 339 AHHPVEIAAALKAARQACDGRVIAV 363


>gi|253315887|ref|ZP_04839100.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
          Length = 429

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|121611475|ref|YP_999282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556115|gb|ABM60264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 475

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 26/248 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  V +D+R +QAG +FVA+ G + D H F                A +         +
Sbjct: 45  PVARVHTDTRTVQAGDLFVALRGPRFDAHAF--------LAQARAGGAAAALAQGGLADA 96

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P + V ++   L+L A+    +    ++AVTG++GK++V   V  I     L ++Q G
Sbjct: 97  GLPGIEVPDSLAALALLAAGWRAQFDLPLIAVTGSNGKTTVTQMVAAI-----LRAWQ-G 150

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206
             +  +    +N +  P  +   +A   ++    G+ H    A+  G+ Q    G+ L+ 
Sbjct: 151 DAALATQGNFNNAIGLPLTLLRLRARHTVAVVELGMNHPGEIAALAGIAQ---PGVALV- 206

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H+++  +  A       +F   LP    A+  ADD Y  + + +   AG  
Sbjct: 207 ---NNAQREHLEFMHSVAAVARENGSVFAS-LPAHGVAVFPADDDY--QALWQELAAGRE 260

Query: 267 VLSVGYQG 274
            L  G  G
Sbjct: 261 CLRFGAGG 268


>gi|298695008|gb|ADI98230.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 417

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 84  VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 142

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 143 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 172

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 173 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 227

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 228 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 285

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 286 NQVIVDDYAHHPREISATIETAR 308


>gi|299131927|ref|ZP_07025122.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Afipia sp. 1NLS2]
 gi|298592064|gb|EFI52264.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Afipia sp. 1NLS2]
          Length = 465

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 24/157 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  +    + +++G    Q+G                     +  A+  L
Sbjct: 117 VAITGTNGKSTTTALTAHLMRQAGF-DVQMGGN-------------------IGTAILSL 156

Query: 178 SSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  V V E SS+ +D      +    G   N+  DHID H + + Y   K RL   
Sbjct: 157 EPPAARRVHVIEMSSYQIDL--TPSLDPSVGILLNVTEDHIDRHGSIENYAEVKERLVVG 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +  +   AI+  DD +S +  + A  AG  V++V  Q
Sbjct: 215 VQ-RGGTAIVGVDDDFSAKAARNAELAGKHVVTVSVQ 250


>gi|253681289|ref|ZP_04862087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
 gi|253562527|gb|EES91978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
          Length = 458

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 21/122 (17%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  +  +TG+ GK++  + V  + +  G  ++ +G       FA   R+T    + L   
Sbjct: 116 PAKVFGITGSDGKTTTTTLVYNMLKSQGYKTW-VGGNIGNPLFANIERMTKEDKVVLE-- 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              LSS  +  ++ + +                   TNL  +H+D H+  + Y NAK  +
Sbjct: 173 ---LSSFQLMTINEDIN---------------CALVTNLSPNHLDVHKDMEEYVNAKKNI 214

Query: 234 FE 235
           F+
Sbjct: 215 FK 216


>gi|238754433|ref|ZP_04615788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
 gi|238707262|gb|EEP99624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
          Length = 438

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V   V ++ + +G   +Q+G    I                   AL+ 
Sbjct: 107 IIAITGSNGKSTVTMLVGEMAKAAG---WQVGVGGNIG----------------VPALTL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +    V +E SS  L+      ++  A +  N+  DH D Y    Q Y  AK+R+++
Sbjct: 148 LKQEN-QLVVLELSSFQLET--TSSLQATAATILNVTEDHTDRYPFGLQQYRAAKLRIYD 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL K
Sbjct: 205 ----NAKICVVNADDALTMPV----RGADSRCISFGVDVGDYHLNK 242


>gi|213647637|ref|ZP_03377690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 90

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V +D+R +  G +FVA+ G + D H F  +A A GA A++VS    +         +
Sbjct: 24  LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74

Query: 90  TPILVVDNTRK 100
            P ++V +TR+
Sbjct: 75  LPQVIVKDTRQ 85


>gi|240850891|ref|YP_002972291.1| UDP-N-acetylmuramate--alanine ligase [Bartonella grahamii as4aup]
 gi|240268014|gb|ACS51602.1| UDP-N-acetylmuramate--alanine ligase [Bartonella grahamii as4aup]
          Length = 475

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 18/189 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262
           TN+  +H+D++ +  A   A  R F E +P    A++  D    + +  R  +       
Sbjct: 181 TNIDAEHLDHYGSFDAVREA-FRQFVENVPFYGFAVLCLDHPEVQSLAGRIDDRWVITYG 239

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  R L++   G+  H   +      ++    +E K+   L P+ G+  V NA  A
Sbjct: 240 ANPQADVRFLNLSMDGQKTHFDVLV---RSRKTGRKIELKNL--LLPMAGQHNVANATAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +GI +  +   L +   V  RF   G+  RG  I+ DY H    ++ +L+  R 
Sbjct: 295 IAIAHELGISNEAIKRGLAEFGGVKRRFTRTGS-WRGIEIFDDYGHHPVEIKAVLRAARE 353

Query: 379 ITSGRIIVV 387
              GR+I +
Sbjct: 354 SAKGRVIAI 362


>gi|212638300|ref|YP_002314820.1| UDP-N-acetylmuramate--L-alanine ligase [Anoxybacillus flavithermus
           WK1]
 gi|226711857|sp|B7GK78|MURC_ANOFW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212559780|gb|ACJ32835.1| UDP-N-acetyl muramate-alanine ligase [Anoxybacillus flavithermus
           WK1]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 100/281 (35%), Gaps = 59/281 (20%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + Q +  +S+ IG  S         +    S  ++ +A  Y 
Sbjct: 104 IAVTGAHGKTSTTGLLAHVMQGAKPTSYLIGDGS--------GKGREGSEYFVFEACEYR 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 H    +  + +               TN+  DH DY    +  F+A    F+++
Sbjct: 156 R-----HFLAYSPDYAI--------------MTNIDFDHPDYFANIEDVFSA----FQQM 192

Query: 238 LPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             +    II   DD Y +++  +           G    F            + +  + E
Sbjct: 193 AWQVKKGIIACGDDEYLQKIQAKV---PVVFYGFGEDNDF----------QARNIVKTPE 239

Query: 297 GKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           G  FD          F  P  G+  V NAL    LC   GID  ++ E L+    V  RF
Sbjct: 240 GTSFDVFVRHTFFASFHIPRYGDHNVLNALAVIALCHYEGIDVNIIQERLKTFPGVKRRF 299

Query: 347 EFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIV 386
                   G ++ + DYAH    +   ++  R     R IV
Sbjct: 300 H---EKMLGSQVLIDDYAHHPTEIRATIEAARQKYPERQIV 337


>gi|3122408|sp|O31211|MURC_STAAU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2642659|gb|AAB87090.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Staphylococcus aureus]
          Length = 437

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|270159321|ref|ZP_06187977.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|289165857|ref|YP_003455995.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
 gi|269987660|gb|EEZ93915.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|288859030|emb|CBJ12959.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
          Length = 879

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 163/409 (39%), Gaps = 44/409 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L+ S L  + P  I+AVTGT+GK++V   V+ I   +  ++  +G T+T   +  +  + 
Sbjct: 473 LYPSHLSARIP--IVAVTGTNGKTTV---VRLIAHFARYANHHVGFTTTDGVYLNNKLIH 527

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           +        A   L    V    +E +  G+ +  L   +      TN+  DH+  +   
Sbjct: 528 SGDCSGPGSAQVVLYDPEVDFAVLECARGGILRSGLGFDECDISIITNITGDHLGLNDIH 587

Query: 224 QAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                A+++ +      K   AI+ ADD  + E ++   +    + S+ Y+   I  +K 
Sbjct: 588 TLEELAQVKAVVAHSTKKSGYAILNADDNLTYE-LRNDFDCNIALFSM-YESPRI--RKH 643

Query: 283 C-----AIHNKQQVTISVEGKDFDFLF---PLPGEFQVYNALVAAGLCIAI--GIDSALV 332
           C     A +  Q   +   G D  FL     +P  F      + A +  A   G+ S   
Sbjct: 644 CRSGGLAAYIDQGKLVVQRGADRTFLSNIKSIPLSFHGAATSMIANILAATLAGVISQFS 703

Query: 333 LEHL-EKLHV-------VPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + + E LHV       +PGR   F+F        ++ VDYAH   +   +   + ++  
Sbjct: 704 FDKIKEALHVFYPTFENLPGRMNLFKFPHC-----QVMVDYAHNEGAFCELKNYLESVHC 758

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGI---- 436
            + I + G  GDR       +G  A  + D I I  D + R     +I   ++ GI    
Sbjct: 759 AKKIGIIGAVGDRRDEDIEKLGFQAASMFDEIVIRHDKDGRGRTHNEINRLLVSGILRSE 818

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-HETVHIVTNGEKKM 482
             P      +   A+   +E+ +    +  A +   ETVH +   EK+ 
Sbjct: 819 FKPSLNIISDEQAALEHVLEVADVNSFIFCAIENVFETVHFLKQKEKQF 867


>gi|315498794|ref|YP_004087598.1| UDP-N-acetylmuramate/alanine ligase [Asticcacaulis excentricus CB
           48]
 gi|315416806|gb|ADU13447.1| UDP-N-acetylmuramate/alanine ligase [Asticcacaulis excentricus CB
           48]
          Length = 475

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 296 EGKDFDFLF---------------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           EG  FD +F               P+ G   V NA  A  +   +G+    V + L    
Sbjct: 264 EGATFDVVFSPVGVEPFVWAGLKLPMTGNHNVSNATAAIAIARELGVSEDDVRKGLGAFG 323

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            V  RF   G    G RI  DY H    +  +LK  R +T G++I V
Sbjct: 324 GVKRRFTTTGI-VNGVRIIDDYGHHPVEIAAVLKAARQVTQGKVIAV 369


>gi|227327090|ref|ZP_03831114.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 486

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 132/339 (38%), Gaps = 56/339 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+        L   R +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRAEMLAELMRFR-HG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  + V  I   +GL  +F  G    + +     RL + S   +A+A     S+L  Q +
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADESDASFLHLQPM 188

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +     +  +D ++        G F NL          +Q + N     F   LP   
Sbjct: 189 VAIVTNIEADHMDTYQ--------GDFENL----------KQTFIN-----FLHNLPFYG 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFD 301
            A++  DDA  +E++ R    G  + + G+        ++   H    Q   ++E KD  
Sbjct: 226 QAVMCIDDAVIRELLPR---VGRHITTYGFSDDAD--VRISGYHQTGAQGHFTLERKDKP 280

Query: 302 FL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TN 352
            L      PG     NA  A  +    GID   +L  LE+      RF+F+G       N
Sbjct: 281 LLTVTLNAPGRHNALNAAAAVAVATDEGIDDDAILRALERFQGTGRRFDFLGEYPLELVN 340

Query: 353 SRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            + G   +  DY H    ++  +K  R    + R++++F
Sbjct: 341 GQSGTAMLVDDYGHHPTEVDATIKAARAGWPNKRLVMIF 379


>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]
          Length = 806

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 30/214 (14%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLD---QHRLDGIKLIAGSFTNLGRDHI 217
           LT PSP            + V  V+V E SS+ L+   +H    + ++     NL  DH+
Sbjct: 265 LTCPSP------------KPVFQVAVVEVSSYQLEVPNKHFCPSVAVV----LNLTSDHL 308

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF- 276
           + H+T + Y   K RL   +   +   + + +   + E M+   N     +++ + G F 
Sbjct: 309 ERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLN-EAMEELVNE----VNLAWIGAFP 363

Query: 277 -IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA--GLCIAIGIDSALVL 333
            + + K   + + +   I V  +       + G    YNA VAA   L + +GID+  + 
Sbjct: 364 GVKVDKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAIS 423

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +EKL V P R + V  +S  G  ++D +  +N
Sbjct: 424 STIEKLRVPPHRMQIVHKDSY-GVTWIDDSKATN 456


>gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 468

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 23/241 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS+D+R + AG +FVA+ G + D H  +  A A GA A+VVS A++    +    + 
Sbjct: 31  VDGVSTDTRTLAAGQLFVALKGERFDAHDHLEAAAAAGAAALVVSGAWAAAHPAPPRPAL 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                V +T   L   A     +    ++ VTG++GK++    +  I           GP
Sbjct: 91  A----VADTLAALGAIARFHRCRFGIPVIGVTGSNGKTTTREMIAAILATR-------GP 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
                    +N +  P  ++       L     T V     +H  +  RL  I +   G 
Sbjct: 140 VLKTEG-NLNNEVGVPLTLF------GLDDAHATAVIEMGMNHPGEIARLAAIAQPQVGV 192

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T     H++   T +A  +AK  L+E  LP    A++ ADDA    ++KR   +G R+L
Sbjct: 193 VTLAAPAHLEGLGTVEAVADAKAELYEG-LPAGGIAVVNADDA---RMLKRGVASGRRML 248

Query: 269 S 269
           +
Sbjct: 249 T 249


>gi|295399556|ref|ZP_06809538.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294979022|gb|EFG54618.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 434

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 96/283 (33%), Gaps = 63/283 (22%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G+ GK+S    +  + Q +  +S+ IG   T             +  Y    LSY 
Sbjct: 104 IAVAGSHGKTSTTGLLAHVMQGAHSTSYLIG-DGTGKGIEGSKYFVFEACEYRRHFLSYF 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY       F+A    F+E+
Sbjct: 163 PDYAIM--------------------------TNIDFDHPDYFANIDDVFSA----FQEM 192

Query: 238 LPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTIS 294
             +    II   DD Y +++      A   VL  G+     F            + V  +
Sbjct: 193 ALQVKKGIIACGDDEYLQKI-----KAKVPVLFYGFGDDNDF----------QARNVVKT 237

Query: 295 VEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            EG  FD          F  P  G+  V NAL    LC    ID  ++ E L+    V  
Sbjct: 238 TEGTSFDVFVRNTFFASFEIPRFGDHNVLNALAVIALCHYEEIDVHIIQERLKTFQGVKR 297

Query: 345 RFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIV 386
           RF        G +I + DYAH    +   +   R    GR IV
Sbjct: 298 RF---SEKVLGNQILIDDYAHHPREIIATIDAARQKYPGREIV 337


>gi|291166629|gb|EFE28675.1| UDP-N-acetylmuramate--alanine ligase [Filifactor alocis ATCC 35896]
          Length = 452

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 130/356 (36%), Gaps = 47/356 (13%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFL 102
           + G+    + F  +   +GA   +  SA +++       ++A I  + P  +    +   
Sbjct: 27  VSGSDSQENFFTKELANKGATIHIGQSAQNIKPDIDLVIYTAAIHPDNPEWMEAKKQNLK 86

Query: 103 SLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
            L  S   G   K  EN +A++GT GK++  S +  +   S        PT  +    ++
Sbjct: 87  MLSRSEFLGLVMKKYENSIAISGTHGKTTTTSMLSVLYSYSDYD-----PTILVGGNLKE 141

Query: 160 ---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
              N     S  ++ +A  Y  S              LD +   GI L      N+  DH
Sbjct: 142 INGNFRIGNSEHFITEACEYFDS-------------FLDLYPKFGIIL------NIEADH 182

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +DY  +      +  R F + +      I   DD   +  +K   N  C +         
Sbjct: 183 LDYFDSLDVIIQS-FRKFSQNVSSNGYTIANGDDQNVRTALKDLPN--CILFGYDKNNDA 239

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFP----LPGEFQVYNALVAAGLCIAIGIDSALV 332
           + +      +     +I +   D D L P    +PG+  + NA  A        I    +
Sbjct: 240 VIVDNSFDKNGNGHFSIQL---DSDILGPFSIKVPGKHNIMNATAAILTAYKDDIPLEKI 296

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   H V  RF++ G N     +Y DYAH  + ++  L   + +   R++ +F
Sbjct: 297 QHGIFSYHGVDRRFQYKG-NYGDVLVYDDYAHHPSEIKATLSAAKFLNPNRLVAIF 351


>gi|227113985|ref|ZP_03827641.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 486

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 131/339 (38%), Gaps = 56/339 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+        L   R +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRAEMLAELMRFR-HG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  + V  I   +GL  +F  G    + +     RL + S   +A+A     S+L  Q +
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADESDASFLHLQPM 188

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +     +  +D ++        G F NL          +Q + N     F   LP   
Sbjct: 189 VAIVTNIEADHMDTYQ--------GDFENL----------KQTFIN-----FLHNLPFYG 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFD 301
            A++  DDA  +E++ R    G  + + G+        ++   H    Q   ++E KD  
Sbjct: 226 QAVMCIDDAVIRELLPR---VGRHITTYGFSDDAD--VRISGYHQTGAQGHFTLERKDKP 280

Query: 302 FL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TN 352
            L      PG     NA  A  +    GID   +L  LE+      RF+F+G       N
Sbjct: 281 LLTVTLNAPGRHNALNAAAAVAVATDEGIDDEAILRALERFQGTGRRFDFLGEYPLELVN 340

Query: 353 SRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            + G   +  DY H    ++  +K  R      R++++F
Sbjct: 341 GQSGTAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIF 379


>gi|295104114|emb|CBL01658.1| UDP-N-acetylmuramate--L-alanine ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 461

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   +YNAL    +C  +G+ +    E          RFE  G    G  +  DYAH 
Sbjct: 284 VPGRHNIYNALAMCAVCRFVGLSAEQCAEAALNFKGAGRRFEVYG-ECNGALVIDDYAHH 342

Query: 366 SNSLEMILKNIRTITSGRIIVV 387
              L   L   + +   R+I V
Sbjct: 343 PTELRATLNTAKEMGYKRLIAV 364


>gi|298346704|ref|YP_003719391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|298236765|gb|ADI67897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
          Length = 480

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 101/252 (40%), Gaps = 30/252 (11%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   + + P +   R      +DSR +  G +FVA+ G   DGH F+     +G +  +V
Sbjct: 6   LREAIGLEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVAIV 65

Query: 74  S------------SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILA 119
           S            +A  L   +    S+    +    R  L    ++  G     + ++ 
Sbjct: 66  SHDRTEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLVIG 125

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK-ALSYLS 178
           +TG++GK++     +Q+    G +   + P   ++SF  +N +  P  +  A  +  YL 
Sbjct: 126 ITGSAGKTTTKDLTKQLLSTKGAT---VAP---VASF--NNEVGLPLTVLEADVSTEYLV 177

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + + AS  G   +  D   L       +G  H++ + + +A    K  + E L 
Sbjct: 178 ------LEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLG 231

Query: 239 PKESPAIIYADD 250
           P    AI+ ADD
Sbjct: 232 PS-GMAILNADD 242


>gi|182420535|ref|ZP_02643564.2| Mur ligase family protein [Clostridium perfringens NCTC 8239]
 gi|182380050|gb|EDT77529.1| Mur ligase family protein [Clostridium perfringens NCTC 8239]
          Length = 560

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 148/371 (39%), Gaps = 32/371 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK+S +  + +  +  G  S  +  T  I    +  +    +  Y AK +  
Sbjct: 165 IVSITGTNGKTSTSRLIYKGFENLGYFS-GLAMTGGIIINNEFVKKGDTTGFYSAKKV-- 221

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234
           L++  V   ++E +  G+ +  L          T+L  DHI  D  +      + K+   
Sbjct: 222 LTNPQVEVGALETARGGILKKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITT 281

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGC----------RVLSVGYQGKFIHLKKVCA 284
            E+LP E   II A+     EV++   N             + +  G +  F+  + V  
Sbjct: 282 REVLP-EGKVIIKAEPKLY-EVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIF 339

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +     
Sbjct: 340 FDGKDKNIIS-NIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIEC--D 396

Query: 345 RFEFVGTNS----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +  +G  +       +I +DY H   + E +      I   +II +    GDR      
Sbjct: 397 VYNNIGRQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIK 456

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTA 452
            +G+IA   +D  I+ +  + R  +  +I   I  GI     K   +       EAI+ A
Sbjct: 457 ELGRIAGKNSDTIIIKETFDRRGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIKKA 516

Query: 453 IEMLNKQDVLV 463
           I M  + D++V
Sbjct: 517 ISMAKEGDIIV 527


>gi|119505122|ref|ZP_01627198.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
 gi|119459104|gb|EAW40203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
          Length = 453

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 30/176 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  ++ +G   ++VS   +L+        N  + V+ +   F++  ++ + G        
Sbjct: 65  IDPSVLEGITELIVSPGVALEHPLVQFALNNKVRVMGDIDLFVAAASAPVIG-------- 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GKS+V + V  +    G               A      TP       AL  L  
Sbjct: 117 ITGSNGKSTVTAMVASMLSACG------------KRVAVGGNFGTP-------ALDLLD- 156

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Q V    +E SS  L+  R   +KL   +  N+  DH+D H +   Y +AK ++F+
Sbjct: 157 QAVDFYVLELSSFQLE--RAQPLKLAVATVLNVSADHLDRHGSMPRYHHAKHKIFQ 210


>gi|15896442|ref|NP_349791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum ATCC 824]
 gi|30316107|sp|Q97EB9|MURD_CLOAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15026265|gb|AAK81131.1|AE007815_1 UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           acetobutylicum ATCC 824]
          Length = 462

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 21/121 (17%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I  VTG+ GK++  + +  + +  G  ++  G   T   F++   ++T   + L   
Sbjct: 117 PAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVGGNIGT-PLFSKIKEVSTKDKVVLE-- 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              LSS  +  + V                      TNL  +H+D H+  + Y NAK  +
Sbjct: 174 ---LSSFQLMTIDVSPE---------------VAVVTNLSPNHLDIHKNMEEYINAKKNI 215

Query: 234 F 234
           F
Sbjct: 216 F 216


>gi|325510600|gb|ADZ22236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum EA 2018]
          Length = 462

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 21/121 (17%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I  VTG+ GK++  + +  + +  G  ++  G   T   F++   ++T   + L   
Sbjct: 117 PAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVGGNIGT-PLFSKIKEVSTKDKVVLE-- 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              LSS  +  + V                      TNL  +H+D H+  + Y NAK  +
Sbjct: 174 ---LSSFQLMTIDVSPE---------------VAVVTNLSPNHLDIHKNMEEYINAKKNI 215

Query: 234 F 234
           F
Sbjct: 216 F 216


>gi|16273062|ref|NP_439294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae Rd KW20]
 gi|260580220|ref|ZP_05848050.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
 gi|1171072|sp|P45063|MURD_HAEIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus
           influenzae Rd KW20]
 gi|260093504|gb|EEW77437.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
          Length = 437

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 40/237 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGV---KVGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 148 LNEDCELYV-LELSSFQLETTY--SLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN 204

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +L  E       ++  +K  +  A N      S  Y  K  + K+   +  K +V 
Sbjct: 205 AKVGVLNNEDRLTFGENENQAKHTVSFAEN------SADYWLKTENGKQYLMV--KDEVI 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  E         L G     N L A  L  AIGI+   +   L     +  RF+ V
Sbjct: 257 LPCEEA------TLVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLV 307


>gi|328542967|ref|YP_004303076.1| UDP-N-acetylmuramate-L-alanine ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412713|gb|ADZ69776.1| UDP-N-acetylmuramate-L-alanine ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 468

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 12/186 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D H    A   A  R F E +P    A++  D    + ++ +  +   R+++
Sbjct: 179 TNIDPEHLD-HYGDFAGVRAAFRHFVENVPFYGFAVMCLDHPEVQSLVGQIEDK--RIVT 235

Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISVE-------GKDFDFLFPLPGEFQVYNALVAAGL 321
            G   +  +    V  +  +   ++  +       G   + + P+PG   V NA  A  +
Sbjct: 236 YGANPQADVRFTDVAMVGGRSTFSVRFQDRRTGETGTLSNLVLPMPGLHNVANAAAAIAV 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+DS  + + L     V  RF + G+ + G  I+ DY H    +  +L   R    
Sbjct: 296 AHELGVDSEAIRKGLAGFGGVKRRFTYTGSWN-GVEIFDDYGHHPVEIRAVLHAARETAK 354

Query: 382 GRIIVV 387
           GR+I V
Sbjct: 355 GRVIAV 360


>gi|323341728|ref|ZP_08081961.1| UDP-N-acetylmuramate--L-alanine ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464153|gb|EFY09346.1| UDP-N-acetylmuramate--L-alanine ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 441

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 28/187 (14%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           TN   DH+DY ++ + Y +A    F+E     ES  +++ DD + +++     +      
Sbjct: 174 TNFEIDHVDYFKSVEDYLSA----FKEFAKNVESLIVVWGDDPHYQDL-----SFDVETW 224

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIG 326
           S G+ +G  I   ++          + V+GK    F  P+ G+  + +AL      IA+G
Sbjct: 225 SYGFGEGNKIRATELEKTTTHSIFDVEVDGKRIHRFNLPIVGDHMILDALA----VIAVG 280

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSR------GGRIYV-DYAHTSNSLEMILKNIRTI 379
           +      E +E   +  G   F G   R         +Y+ DYAH    + + L+  RT 
Sbjct: 281 L-----YEGIEPNDIEAGLQTFTGAKRRFVIETGKDNVYIDDYAHHPTEVRVTLEAARTR 335

Query: 380 TSGRIIV 386
              R IV
Sbjct: 336 YPDRKIV 342


>gi|253734476|ref|ZP_04868641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253727530|gb|EES96259.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|320141683|gb|EFW33518.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143768|gb|EFW35542.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 444

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 170 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 199

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 200 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 254

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 255 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 312

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 313 NQVIVDDYAHHPREISATIETAR 335


>gi|188578475|ref|YP_001915404.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522927|gb|ACD60872.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 455

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 134/346 (38%), Gaps = 55/346 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           + P  I+  A  +VV +A S        R N  +  V+D  R++ S    L    L G+ 
Sbjct: 57  YAPSNISPDATDVVVGNALS--------RGNPAVEAVLDAGRRYTSGAQWLAEQVLPGR- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             + LAV GT GK++  + +  + + +G +  F IG  +  + F    RL          
Sbjct: 108 --DTLAVAGTHGKTTTTTILSYLLEAAGRAPGFLIGGVA--ADFGVSARL---------- 153

Query: 173 ALSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                  QG   V VEA  +       + +    + +     NL  DH D      A   
Sbjct: 154 ------GQGREFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAI-- 204

Query: 229 AKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVC 283
              R F  L+   P     I+  +DA+  EV+      GC   V   G+        ++ 
Sbjct: 205 --QRQFHHLVRTVPARGRLIVNGEDAHLAEVLAM----GCWTSVEQFGFDASLDWSARLI 258

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           A        +    +     + L G   V N L A     A+G+D A V+  L     V 
Sbjct: 259 AADGSAFAVLHRGAEVGHVQWLLLGRHNVLNGLAALAAVHAVGVDPATVMPALAHFQSVK 318

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            R E +G+ +RG  +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 319 RRLEVIGS-ARGITVYDDFAHHPTAIATTLQGLRARVGAARVVVAM 363


>gi|182626009|ref|ZP_02953772.1| Mur ligase family protein [Clostridium perfringens D str. JGS1721]
 gi|177908716|gb|EDT71227.1| Mur ligase family protein [Clostridium perfringens D str. JGS1721]
          Length = 560

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 148/371 (39%), Gaps = 32/371 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK+S +  + +  +  G  S  +  T  I    +  +    +  Y AK +  
Sbjct: 165 IVSITGTNGKTSTSRLIYKGFENLGYFS-GLAMTGGIIINNEFVKKGDTTGFYSAKKV-- 221

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234
           L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+   
Sbjct: 222 LTNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITT 281

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGC----------RVLSVGYQGKFIHLKKVCA 284
            E+LP E   II A+     EV++   N             + +  G +  F+  + V  
Sbjct: 282 REVLP-EGKVIIKAEPKLY-EVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIF 339

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +     
Sbjct: 340 FDGKDKNIIS-NIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIEC--D 396

Query: 345 RFEFVGTNS----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +  +G  +       +I +DY H   + E +      I   +II +    GDR      
Sbjct: 397 VYNNIGRQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIK 456

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTA 452
            +G+IA + +D  I+ +  + R  +  +I   I  GI     K   +       EAI+ A
Sbjct: 457 ELGRIAGENSDTIIIKETFDRRGREKLEITNLIKSGIKEVENKSVEVLSIIDEEEAIKKA 516

Query: 453 IEMLNKQDVLV 463
           I M  + D++V
Sbjct: 517 ISMAEEGDIIV 527


>gi|160942737|ref|ZP_02089979.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446011|gb|EDP23014.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
          Length = 461

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   +YNAL    +C  +G+ +    E          RFE  G    G  +  DYAH 
Sbjct: 284 VPGRHNIYNALAMCAVCRFVGLSAEQCAEAALNFKGAGRRFEVYG-ECNGALVIDDYAHH 342

Query: 366 SNSLEMILKNIRTITSGRIIVV 387
              L   L   + +   R+I V
Sbjct: 343 PTELRATLNTAKEMGYKRLIAV 364


>gi|57652038|ref|YP_186623.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87159924|ref|YP_494380.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195554|ref|YP_500360.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221845|ref|YP_001332667.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161509957|ref|YP_001575616.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|258424154|ref|ZP_05687036.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635]
 gi|258452291|ref|ZP_05700304.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948]
 gi|262049049|ref|ZP_06021927.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30]
 gi|262051815|ref|ZP_06024032.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           930918-3]
 gi|282925627|ref|ZP_06333276.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765]
 gi|284024787|ref|ZP_06379185.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294849901|ref|ZP_06790640.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754]
 gi|68565674|sp|Q5HF34|MURC_STAAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892742|sp|Q2FFZ8|MURC_STAA3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122539287|sp|Q2FXJ0|MURC_STAA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|172048949|sp|A6QHS3|MURC_STAAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082505|sp|A8Z4G7|MURC_STAAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|57286224|gb|AAW38318.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87125898|gb|ABD20412.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203112|gb|ABD30922.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374645|dbj|BAF67905.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368766|gb|ABX29737.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257845775|gb|EEV69807.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635]
 gi|257860016|gb|EEV82851.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948]
 gi|259160309|gb|EEW45336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           930918-3]
 gi|259162866|gb|EEW47430.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30]
 gi|282592407|gb|EFB97421.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765]
 gi|294823240|gb|EFG39670.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754]
 gi|315197209|gb|EFU27548.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|329726994|gb|EGG63451.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 437

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|320093979|ref|ZP_08025806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979085|gb|EFW10601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 468

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR    G ++VA  G   DGH ++  A   GA   +V     L D        T +
Sbjct: 27  VVTDSREAAPGGVYVARRGENADGHDYVASAARAGAVCALVERVVDLSDCPPI----TQV 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136
           +V D T     L  + L         +++AVTG+ GK++    + Q+
Sbjct: 83  VVGDATGALGDLARAHLEALRAGGAIDVVAVTGSVGKTTTKDLLLQV 129


>gi|283835150|ref|ZP_06354891.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
 gi|291069450|gb|EFE07559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
          Length = 438

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L ++   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDAERELYV-LELSSFQLETT--SSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAKVCVVNADDALTMPV----RGADERCVSFGINMGDYHLNR 242


>gi|156741088|ref|YP_001431217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232416|gb|ABU57199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 485

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 30/266 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +++     E+  ++   P    +   +E   DSR   +  +FVA+ G + DGH F+
Sbjct: 2   LRLDEVLPGVQEEVNRRIHALPPALMQVAFSEAVIDSRLATSECLFVALRGERVDGHEFL 61

Query: 61  PQAIAQGAEAIVVS----SAYSLQDFSATI--------RSNTP----ILVVDNTRKFLSL 104
             A A+GA   +V     S+ +L+     I           TP    ++ VD+ +  L+ 
Sbjct: 62  ADAAARGARGALVRRSKVSSLTLERPYVVIDPVTGEGLERATPDTMLLIAVDDPQAALNR 121

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A+   G +   ++ +TG+ GK+S       + QR    SF+     T+ S    N   T
Sbjct: 122 LAAYHRGMYNPVVIGITGSVGKTSTKEVTAGVLQR----SFR-----TLKSPRSYNSEAT 172

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
             PI L   L   +   V  + +     G   H     +   G  TN+G  H++   + +
Sbjct: 173 -LPIVL---LKLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVTNVGPSHLERMGSIE 228

Query: 225 AYFNAKMRLFEELLPKESPAIIYADD 250
           A   AK  L  + LP++  AI+  DD
Sbjct: 229 AIQRAKSEL-PQALPEDGFAILNIDD 253


>gi|12725089|gb|AAK06138.1|AE006433_8 UDP-N-acetylmuramate-alanine ligase [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 457

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 33/192 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH DY +  +   +A    F++        I     AY ++V  R   A   +  
Sbjct: 185 TNIDFDHPDYFEGIEDVTSA----FQDYANNIKKGIF----AYGEDVNLRKLTAKAPIYY 236

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAA 319
            G++            +  + +  S  G  FD          F+ P  G+  V NAL   
Sbjct: 237 YGFEAN--------DDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPAYGKHNVLNALSVV 288

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIR 377
            +C  +G+D   V +HL     V  RF    T  + G   +  D+AH    +E  L   R
Sbjct: 289 AVCHNLGLDMTEVADHLLTFRGVKRRF----TEKKVGETVIIDDFAHHPTEIEATLDAAR 344

Query: 378 TITSGR-IIVVF 388
                R I+ VF
Sbjct: 345 QKYPDREIVAVF 356


>gi|119717286|ref|YP_924251.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
 gi|166224710|sp|A1SL79|MURC_NOCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119537947|gb|ABL82564.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
          Length = 446

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 103/274 (37%), Gaps = 45/274 (16%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AV GT GK++  S +    Q +G       PT  I                 A  ++
Sbjct: 116 RVVAVAGTHGKTTTTSLLTVALQAAGAD-----PTYAIGGD------------LAATGVN 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G   V+    S G   H        A   TN+  DH+D   T +AY  A    F 
Sbjct: 159 AAEGTGDLFVAEADESDGAFLH----YSPYAAVVTNIEADHLDQWGTPEAY-AAAFDEFA 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + L  +   +  ADD  +  + +R   AG RV++V         +   A+     VT+  
Sbjct: 214 DTLAPDGFLVCVADDPGAAALAERHRAAGRRVVTV-------SARDAGALDG---VTLWS 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                      PGE  + +AL A    + +G  +A +   L        R E  G  + G
Sbjct: 264 -----------PGEHYLADALAALAAGVELGYAAADLARGLASYTGTKRRMERKG-EAGG 311

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVF 388
            R+Y  YAH    +   L+  R +  SGR++V F
Sbjct: 312 VRVYDSYAHHPTEIAGDLQAARAVAGSGRVVVAF 345


>gi|229163413|ref|ZP_04291364.1| Folyl-polyglutamate synthetase [Bacillus cereus R309803]
 gi|228619982|gb|EEK76857.1| Folyl-polyglutamate synthetase [Bacillus cereus R309803]
          Length = 434

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 29/204 (14%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDS 329
           K   A+H +     S +G+ FDF  P          + G  QV NA +A    + +    
Sbjct: 226 KHFTALHKQS----SEDGEQFDFTCPFATFDDVQISMKGSHQVGNAALALMAVMYVKTYV 281

Query: 330 ALVLEH------LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
           + ++E       L++ + V GRFE +  N     + +D AH    +E ++K +       
Sbjct: 282 SFLIEEEEIRTGLQEAYWV-GRFEKLQNNPD---VIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            +IV+F   GD+      ++G++     +I   T    R+   +K+       I   +  
Sbjct: 338 NVIVLFTALGDKQL--HNMVGQLETISDEIIFTTFAFDRAISADKLAT--YSQIESKLVF 393

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            N  EAI T +EM+ + DV ++ G
Sbjct: 394 ENWKEAIDTKLEMIGENDVFIITG 417


>gi|225441698|ref|XP_002277291.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1713

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 30/214 (14%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLD---QHRLDGIKLIAGSFTNLGRDHI 217
           LT PSP            + V  V+V E SS+ L+   +H    + ++     NL  DH+
Sbjct: 692 LTCPSP------------KPVFQVAVVEVSSYQLEVPNKHFCPSVAVV----LNLTSDHL 735

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF- 276
           + H+T + Y   K RL   +   +   + + +   + E M+   N     +++ + G F 
Sbjct: 736 ERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLN-EAMEELVNE----VNLAWIGAFP 790

Query: 277 -IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA--GLCIAIGIDSALVL 333
            + + K   + + +   I V  +       + G    YNA VAA   L + +GID+  + 
Sbjct: 791 GVKVDKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAIS 850

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +EKL V P R + V  +S  G  ++D +  +N
Sbjct: 851 STIEKLRVPPHRMQIVHKDSY-GVTWIDDSKATN 883


>gi|26987285|ref|NP_742710.1| UDP-N-acetylmuramate [Pseudomonas putida KT2440]
 gi|24981930|gb|AAN66174.1|AE016245_3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas putida KT2440]
          Length = 449

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 107/274 (39%), Gaps = 46/274 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++ +S +  + + +G+S  F IG      +F+   RL   +P ++ +A  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIG--GVPQNFSASARLGD-TPFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    I        NL  DH D      A    +     
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTAI------LNNLEFDHADIF-PDLASIERQFHHLV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +P E   I       +++ ++R    GC   V + G  G++            Q   +
Sbjct: 209 RTIPSEGLVI----HPTTEQALERVIGMGCWTPVQTTGEGGQW------------QARLL 252

Query: 294 SVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           S +G  F+ LF           L G+  V NAL        +G+  A+ ++ L     V 
Sbjct: 253 SPDGSRFEVLFEGEVQGVVDWALTGQHNVANALATLAAARHVGVVPAMGIDGLSAFKSVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            R E V    +G  IY D+AH   ++   L  +R
Sbjct: 313 RRMEKV-AEVQGVTIYDDFAHHPTAIATTLDGLR 345


>gi|145633131|ref|ZP_01788863.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145635590|ref|ZP_01791288.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148826248|ref|YP_001291001.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229844906|ref|ZP_04465044.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
 gi|166224693|sp|A5UCW7|MURC_HAEIE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|144986357|gb|EDJ92936.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145267152|gb|EDK07158.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148716408|gb|ABQ98618.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229812287|gb|EEP47978.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
          Length = 475

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 131/350 (37%), Gaps = 79/350 (22%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAV 120
           +GA  +VVSSA         I+ + P LV    ++        + A  +  +H    +AV
Sbjct: 76  EGASVVVVSSA---------IKDDNPELVASKQKRIPVIQRAQMLAEIMRFRHG---IAV 123

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176
            GT GK++  + +  I  ++ L    +     +   A  N     S   +A+A     S+
Sbjct: 124 AGTHGKTTTTAMISMIYTQAKLDPTFV--NGGLVKSAGKNAHLGASRYLIAEADESDASF 181

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +  V                        TN+  DH+D ++       A    F  
Sbjct: 182 LHLQPMVSV-----------------------VTNMEPDHMDTYEGDFEKMKATYVKFLH 218

Query: 237 LLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLS---VGYQGKFIHLKKVC 283
            LP    A++ ADD    E++ +          +  A  R+      G+QG   H   +C
Sbjct: 219 NLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQG---HYTVIC 275

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N +++ +         L  +PG+    NA  A  +    GID+  +LE L       
Sbjct: 276 P--NNERINV---------LLNVPGKHNALNATAALAIAKEEGIDNEAILEALADFQGAG 324

Query: 344 GRF----EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            RF    EF+  N +  R+  DY H    + + +K  R      RI+++F
Sbjct: 325 RRFDQLGEFIRPNGK-VRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIF 373


>gi|332531950|ref|ZP_08407834.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038577|gb|EGI75020.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 483

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 109/283 (38%), Gaps = 42/283 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  I  ++GL  +F IG    + + A  N     S   +A+A   
Sbjct: 121 IAIAGTHGKTTTTSLIASIYGQAGLDPTFIIG---GLLNSAGSNAKVGKSDFLIAEADES 177

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH+D +            
Sbjct: 178 DASFLHLQPMVSV-----------------------ITNIEEDHMDTYGGSLEKMKDTYV 214

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  D   + E++ R    G  V++ G + K    +      +    T
Sbjct: 215 DFIHNLPFYGLAVVCIDSEVAAELIPRF---GRPVITYG-ESKDADYRMSDFSQSANTCT 270

Query: 293 ISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +V  K  + L     +PG     NA  A  +     I +  +LE L+K   +  RF+  
Sbjct: 271 FTVTNKQGECLTATLNMPGRHNALNATAAIAVAKDQNIANHAILEALQKFEGIGRRFQHY 330

Query: 350 G--TNSRGGRIYV-DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           G   N RG  + V DY H  + +   +  +R      R+++V+
Sbjct: 331 GEFENERGNVMLVDDYGHHPSEVAATIAAVREGWPDKRLVMVY 373


>gi|239945137|ref|ZP_04697074.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|239991598|ref|ZP_04712262.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 11379]
 gi|291448599|ref|ZP_06587989.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
 gi|291351546|gb|EFE78450.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
          Length = 466

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 25/244 (10%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHN-AGCRVLSVG 271
           H +Y    + Y +     FE  + K  P    +I AD   + E+ +R  + A  +V++ G
Sbjct: 191 HANYASMDEIYDS-----FETFVGKVVPGGTLVISADQPGAVELTRRVRDLADLKVVTYG 245

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   + + KV       +VT+ + GK   F   +PG    +NA+ A    +A+GI + 
Sbjct: 246 SAEDADVRVHKVTPRGLTSEVTVLLNGKFLTFTVSVPGAHYAHNAVAALAAGVALGIPAH 305

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFG 389
            +   L     V  R +  G  + G ++   YAH    +   L+ +R   +  RI+VVF 
Sbjct: 306 NLASALGSYTGVKRRLQLKG-EAAGVQVIDSYAHHPTEMTADLEAMRGAAADARILVVFQ 364

Query: 390 CG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
                R Q     MG+ AL LAD ++V D  P  EDP          IPG I     I+A
Sbjct: 365 PHLFSRTQELGTEMGQ-ALALADASVVLDIYPAREDP----------IPG-ITSALIIDA 412

Query: 449 IRTA 452
            +TA
Sbjct: 413 AKTA 416


>gi|229495556|ref|ZP_04389289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317539|gb|EEN83439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 460

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 164/390 (42%), Gaps = 55/390 (14%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           KD   L N++ I  +    ++ + V++DSR  +   +F+A+ G + DG+ F   A+A+G 
Sbjct: 13  KDSSLLPNRMDILELYTYFKRCSGVTTDSRAPKRDSLFIALKGERFDGNDFALDALAKGC 72

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
                  AY++ D +   +     L V+++   L+  A     +    I+ +TGT+GK++
Sbjct: 73  -------AYAVVDRAELAQKEARCLYVEDSFVALTELARMHRRQLGFPIIGITGTNGKTT 125

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + +    S++ IG  +T+ +   +N++  P  +     LS+        V + 
Sbjct: 126 TKELISAVLR----STYTIG--ATVGNL--NNQIGVPLTL-----LSFTPEMQYGVVEMG 172

Query: 189 ASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           AS  G D   L  I +   G  TN+GR H++   + +    AK  L++ L      A + 
Sbjct: 173 ASHIG-DIAELTAIAEPDFGLITNIGRAHLEGFGSFEGVTKAKCELYDWLGQHNGEAWVN 231

Query: 248 ADDA----YSKEVMKRAHNAGCRVL--------SVGY--QGKFIHLKKVCAIHNKQQVTI 293
           ADD     +S  +++  +                +GY     F   ++   +H +     
Sbjct: 232 ADDPLLMQHSAPLVRTTYGTSREAFFRASLLDHPLGYFLAFAFYWQRETYRVHTQ----- 286

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G++ + NAL A  + + +G+    ++  LE       R +++    
Sbjct: 287 ------------LVGKYNLPNALAAVAVGLRLGVAPPDIVMALEHYSPSNSRSQYIANTP 334

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
               + VD Y    +S+   ++N  + TSG
Sbjct: 335 HHNNLVVDAYNANPSSMYTAIENFLS-TSG 363


>gi|189501429|ref|YP_001960899.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
 gi|226711894|sp|B3EQC0|MURD_CHLPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189496870|gb|ACE05418.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 466

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 129/301 (42%), Gaps = 49/301 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA-K 172
           P  I+ +TGT GK++ +S V+ IC  SG +S             ++ R+ +   I +   
Sbjct: 107 PAFIIGITGTDGKTTTSSMVEAICL-SGANS-------------REQRVFSAGNIGVPFS 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKM 231
           +L     +G   V VE SS+ L++ R    +      TN+  DH+D Y  + + Y  AK 
Sbjct: 153 SLVGEMRKGDIAV-VELSSYQLERCR--SFRPDVAVITNIMPDHLDRYGGSMKRYAEAKY 209

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-----RVLSVGYQGKFIHLKKVC--A 284
           R++ +   K+   +  ADD    E + RAH  G      +++      K   L   C  A
Sbjct: 210 RIYAQQR-KQDTLVYNADD----ETL-RAHFEGGGAFVPQLVPFSLDRKRASLGGACYAA 263

Query: 285 IHNKQQVTISVEGKDFD-------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           I     +T+ V G++         F     G   + NAL A     A G+D   + E L 
Sbjct: 264 IEGDWLITV-VNGREEKVITGSGLFKRSFRGRHNLENALAAVAATRAAGVDVFPIREALR 322

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDRDQ 396
           +   V  R E+V T        VD+ + S +  +  L+     T G+++++    G RD+
Sbjct: 323 RFAGVEHRQEYVRTMH-----GVDWINDSKATNLNALRQALDATPGKLVLI---AGGRDK 374

Query: 397 G 397
           G
Sbjct: 375 G 375


>gi|312870041|ref|ZP_07730178.1| Mur ligase middle domain protein [Lactobacillus oris PB013-T2-3]
 gi|311094438|gb|EFQ52745.1| Mur ligase middle domain protein [Lactobacillus oris PB013-T2-3]
          Length = 445

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +V A+        +V+  D++F  P+ G + +YNAL A  L   +G+D   +    EK  
Sbjct: 240 RVTAVDEMTSADSTVKFDDYEFKIPVGGSYNIYNALAAYSLSRFMGVDQEAIKTAFEKSP 299

Query: 341 VVPGRFEFV 349
            + GR E V
Sbjct: 300 EIFGRQERV 308


>gi|297621609|ref|YP_003709746.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Waddlia
           chondrophila WSU 86-1044]
 gi|297376910|gb|ADI38740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Waddlia
           chondrophila WSU 86-1044]
          Length = 415

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTGT+GK++V   +  +  R G  +  +G                   I L   L  
Sbjct: 105 MIAVTGTNGKTTVTQLIGHVLNRCGKPAKVLGNGG----------------IPLTAELDA 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  + +     E SS+ L+   L+   +  G+  N+  DH+D +   +AY  AK+RL
Sbjct: 149 LQKEMIV---CELSSYQLET--LNSRVVDVGAVLNITPDHLDRYLNMEAYAKAKLRL 200


>gi|294338816|emb|CAZ87150.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) MurD [Thiomonas sp. 3As]
          Length = 514

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 16/118 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TGT+GK++V      + +R+G S    G  S             PS + + +A   
Sbjct: 122 IVAITGTNGKTTVTRLTGLMLERAGWSVAVAGNIS-------------PSMLDVLQARLQ 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                   V +E SS  L  H ++G    A +  N+ +DH+D+H    AY   K  +F
Sbjct: 169 ADDLPAAWV-LELSSFQL--HGMEGFAADAATVLNITQDHLDWHGDMTAYAADKANIF 223


>gi|283768730|ref|ZP_06341641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
 gi|283104516|gb|EFC05889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
          Length = 523

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 130/315 (41%), Gaps = 44/315 (13%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-------IGPTSTI 153
           ++ L   RLY +     + +TG+ GK+S  + +Q I +    S          +G T TI
Sbjct: 164 YIHLGKKRLYAQRDLIKIGITGSYGKTSTKNIIQSIVREEYHSLMTPASYNTPMGITMTI 223

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
            ++ +        PI+      ++   G  HV       G     +  ++   G  T++G
Sbjct: 224 RNYLK--------PIHQV----FVCEMGADHV-------GEITRLMKYVQPQIGVVTSVG 264

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             H+    + +   + KM++ E  LPK+   +I  D+ Y ++   R  N+   ++S G Q
Sbjct: 265 PQHLLTFGSLENIIHEKMQMIER-LPKDGLGVINLDNDYIRQY--RVKNS-VPLISFGIQ 320

Query: 274 GKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA--IGIDS 329
            + +  +  K+         T+    ++  F   L GE  + N L  +G+ +A  +GI  
Sbjct: 321 SEDVDYRAVKISYTTTGSYFTVVHAKEEVAFHTKLLGELNIMNIL--SGIVVARHLGISW 378

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVV 387
             +   +  +  V  R E    N   G  ++D A  +N +  +M L+ +  +   R I+ 
Sbjct: 379 KSLQRAVANMEQVEHRLELKKIN---GHRFIDDAFNANPIGAKMALEVLSMMPGKRYIIT 435

Query: 388 FG---CGGDRDQGKR 399
            G    G  +D+  R
Sbjct: 436 PGMIDLGKKQDEYNR 450


>gi|327399129|ref|YP_004339998.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
 gi|327181758|gb|AEA33939.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
          Length = 460

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 109/287 (37%), Gaps = 18/287 (6%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+  DH+ ++      F  +   F + +      II  DD   K+    +      
Sbjct: 181 GLLTNIDNDHLGFYGN----FENEKVAFYDFMDNSEKLIINIDDPIIKQWKNLSKRQNLL 236

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAI 325
             S+  +   ++   +         +I    K  + +   + G   + NAL    L   +
Sbjct: 237 TYSIKSKKADVYAYDIQTNAAYSIFSIKTPTKKIEQIKLKIIGTHNISNALAVVCLAEIL 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            I   ++ + L +   V  RF +VG N R  ++Y DYAH    +   LK  + I S  I 
Sbjct: 297 EIGEDIIRKTLSEFEGVDRRFTYVG-NYRNLKVYDDYAHHPTEIRETLKAAKLI-SKNIY 354

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADI--AIVTDDNPRSEDP-----EKIRAEIIHGIPG 438
            VF     R      +M + A    D     V D  P SE P      +I A+ ++ I  
Sbjct: 355 AVFQP--HRFSRTAYLMDEFAGSFKDAKRVFVLDIFPASESPIDGIDSQILAQKVNEISA 412

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG--HETVHIVTNGEKKMS 483
                N  + ++  ++ + +  V+V  G G     +  +TN  K ++
Sbjct: 413 NAVYINNEDMLKKHLDQIEEDGVVVALGAGSVSRIIRKITNDYKNIT 459


>gi|326387156|ref|ZP_08208766.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208337|gb|EGD59144.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 106/281 (37%), Gaps = 36/281 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           HP   +AV GTSGKS+V   +  I   +G       PT  ++     N +   +P   A+
Sbjct: 126 HP---IAVGGTSGKSTVTGMIGWILTVAGRD-----PT-IMNGAVMKNFVAPEAPFASAR 176

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                   G   V+    S G        I L   +   L    +D+   ++        
Sbjct: 177 V-----GTGTDFVAEVDESDG-------SIALYRPAIAVLNNVSLDHKSLEELRV----- 219

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
           LF + L +   A I ADD  S  +  RA  A    L+ G+ +   I +           +
Sbjct: 220 LFGDFLARAQAAAINADDPESMALAPRARCA----LTFGFGETAQISVDPTSIRQGPTTI 275

Query: 292 TISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +V     G+   F  P PG   + NAL A   C   G+  A  +  LE    +  RF+
Sbjct: 276 AATVIDRRSGETHAFTLPQPGRHNLANALAALAACDLSGVPLAQAVAALESFAGLARRFD 335

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            VGT   G  +  D+ H    +   L  ++    GR+I +F
Sbjct: 336 IVGTTPSGITVIDDFGHNPEKVAATLTTLKA-HPGRVIALF 375


>gi|301155884|emb|CBW15353.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           parainfluenzae T3T1]
          Length = 437

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 108 IIGITGSNGKSTVTTLVYEMAKAAGI---KVGMGGNIG----------------IPALSL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 149 LNEDCDLYV-LELSSFQLETTY--SLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYH- 204

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  A++  +D   K       N   +V+S         LK      N +Q  ++ E
Sbjct: 205 ---NAETAVVNLED---KLTFGEGENQAKKVVSFAENQADYWLK----TENGKQYLMAKE 254

Query: 297 GKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               + + P     L G     N L A  L  A+GI+   +   L +   +  RF+ 
Sbjct: 255 ----EVILPCDEATLVGRHNYMNILAATALAQAVGINLEAIRTALRQFKGLDHRFQL 307


>gi|212635043|ref|YP_002311568.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella piezotolerans
           WP3]
 gi|226711874|sp|B8CNL2|MURC_SHEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212556527|gb|ACJ28981.1| UDP-N-acetylmuramate-alanine ligase [Shewanella piezotolerans WP3]
          Length = 489

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 10/174 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D +             F   LP    A++  DD   +E++ R      +V++
Sbjct: 195 TNIEADHMDTYGGDIEKLKNTFVDFIHNLPFYGVAVVCIDDPIVRELLPRFSR---KVVT 251

Query: 270 VGYQGKFIHLKKVCAIHN--KQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G+ G    ++ V         Q T+   G  D +    LPGE  V NAL A  +     
Sbjct: 252 YGF-GDDADVQAVGFTQTGYSSQFTVRRSGVADLNLSVNLPGEHNVLNALAAIAVASEDD 310

Query: 327 IDSALVLEHLEKLHVVPGRFEFVG--TNSRGG-RIYVDYAHTSNSLEMILKNIR 377
           I+   +++ L +   +  RF+ VG    ++G  ++  DY H  + +   +K  R
Sbjct: 311 IEDEAIIKALAEFQGIGRRFQQVGDFETAKGEVKLVDDYGHHPSEVAATIKAAR 364


>gi|126643213|ref|YP_001086197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 397

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 25/282 (8%)

Query: 93  LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           LVV +TR  L  L A R        ++A+TG+SGK++    +  I  R       + PT 
Sbjct: 22  LVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR-------LAPT- 73

Query: 152 TISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            I+    +N L  P  +  L K   Y   + G  H      +  + Q  + GI       
Sbjct: 74  LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGI------- 126

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+     +     AK  ++  +LP +  AII   D ++ E+ + A +   +++S
Sbjct: 127 LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIIPQQDDFTAEIREAAKS--HQIMS 183

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G  G     +      +      + +G  F  L P  GE  V NA  A    +A+G+  
Sbjct: 184 FGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVAFALALGVSL 242

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             +++ L +     GR  F+    +   +++D  + +N   M
Sbjct: 243 EDIVKGLAQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 281


>gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 823

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 27/206 (13%)

Query: 35  SDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +DSR +   A  +F A+     DGH +I +    G    VVS    L D+     +N   
Sbjct: 29  TDSRQVFYPAETLFFALSTKNNDGHKYINELYELGVRNFVVSQI--LPDWENYNDAN--F 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV NT   L   A+    +    ++ +TG++GK+ V  ++ QI  +     F I    T
Sbjct: 85  LVVTNTLAALQRIAAYHRNQFDIPVIGITGSNGKTVVKEWLYQILHQ----DFNI----T 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
            S  + ++++  P  ++     + L   G+    +   S   +  +L+  I+   G  TN
Sbjct: 137 HSPRSYNSQIGVPLSVWQMNDHTQL---GIFEAGI---SQPEEMSKLEAIIRPTIGILTN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +G+ H      Q+ + + K +  E+L
Sbjct: 191 IGQAH------QEGFKSMKQKCLEKL 210


>gi|295111740|emb|CBL28490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synergistetes
           bacterium SGP1]
          Length = 458

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 47/285 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTG++GKS+V + +  +   +   +  +G                     L +A S 
Sbjct: 115 LIGVTGSNGKSTVTALIGHMLN-AAHRNVAVGGN-------------------LGRAASV 154

Query: 177 LSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            + +    V +E SS  L+  H L     I    TNL  DH+++H + +AY  AK ++  
Sbjct: 155 FAGREFDAVVLELSSFQLEWTHTLSSCVSI---VTNLAPDHLNWHGSYEAYVAAKAKILS 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              P     I+   D    E +K       RV+++ ++ +  H         +++ T+ +
Sbjct: 212 LRAPS-GWGIVQDRDV---EALKAGGEE--RVITLSWEERPKHGMAGHIFMGEEEATLRL 265

Query: 296 EGKDFDFLF-----PLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFV 349
            G +   LF      L G   + N  ++      +G+D  A  L  L+    +P R E  
Sbjct: 266 NG-EMTPLFRYSETTLLGAHNLENVAMSVAALRLLGLDEDAKTL--LKGFFPLPHRCERA 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGG 392
           GT    G +YVD +  +N    +  ++  +T+  GR +V+ G  G
Sbjct: 323 GTVD--GVLYVDDSKGTN----VAASVTAMTALPGRKVVILGGRG 361


>gi|148652337|ref|YP_001279430.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp. PRwf-1]
 gi|189029024|sp|A5WCT9|MURC_PSYWF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148571421|gb|ABQ93480.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp. PRwf-1]
          Length = 476

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 9/190 (4%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +A   TN+ +DH+D +        A    F + +P    A++  DD   KE+     + G
Sbjct: 188 MAAIVTNIDQDHMDTYGNSFDKLKAAYIQFLQNMPFYGLAVVCGDD---KELFDMIDDIG 244

Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLC 322
             VL+ G +    +    V     K   T+  + ++  +    +PG+  V NAL A  + 
Sbjct: 245 RPVLTFGLEPHNNVQATNVRVDGTKTHFTVLRKDREPLELTLNIPGQHNVLNALAAITMA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE---FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-T 378
              G++   +   L K   V  RFE    V  +     +  DY H    +   +K  R +
Sbjct: 305 TDEGVNDDAIKRALAKFAGVGRRFEQQACVAKDDGDVLLIDDYGHHPVEVAATIKAARAS 364

Query: 379 ITSGRIIVVF 388
               R++++F
Sbjct: 365 YPERRLVMLF 374


>gi|331266039|ref|YP_004325669.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus oralis Uo5]
 gi|326682711|emb|CBZ00328.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus oralis Uo5]
          Length = 444

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITANAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|323441520|gb|EGA99172.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O46]
          Length = 437

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVPNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|254562107|ref|YP_003069202.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
 gi|254269385|emb|CAX25351.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
          Length = 468

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 128/323 (39%), Gaps = 51/323 (15%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRS 140
           S  IR + P L+    R+   +  + +  +    ++ +AV GT GK++  S V  +    
Sbjct: 73  STAIRRDNPELIEARERRLPVVRRAEMLAELMRFKSCVAVAGTHGKTTTTSLVATLLDAG 132

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            L    I     I+++  + R+                      + VEA     D+    
Sbjct: 133 NLDPTVIN-GGIINAYGTNARMGAGD-----------------WMVVEA-----DESDGT 169

Query: 201 GIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +KL A     TN+  +H+D+  + +A  +A  R F + +P    A++  D    ++++ 
Sbjct: 170 FLKLPADVAIVTNIDPEHLDHFGSFEAIKDA-FRRFIDNIPFYGFAVMCIDHPIVQDLVG 228

Query: 259 RAHN-----------AGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
              +           A  R++ +   G Q +F    +V     +    + +E    D + 
Sbjct: 229 HIEDRRIITYGENPQADVRLIDIDLKGGQSRF----RVMIRDRRPGFRMEIE----DLVL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG     NA  A  +   +G+ S  + + L     V  RF   G  + G  I+ DY H
Sbjct: 281 PMPGRHNALNATAALAVAHELGVPSDAIRKALAGFGGVKRRFTRTGEWN-GATIFDDYGH 339

Query: 365 TSNSLEMILKNIRTITSGRIIVV 387
               ++ +L+  R  T GR+I +
Sbjct: 340 HPVEIQAVLRAARASTDGRVIAI 362


>gi|111018103|ref|YP_701075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodococcus
           jostii RHA1]
 gi|118595686|sp|Q0SHR9|MURD_RHOSR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110817633|gb|ABG92917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodococcus jostii
           RHA1]
          Length = 499

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 22/125 (17%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSP 167
           LYG  P   L VTGT+GK++  S +Q I + + L S   G    I     D  R T P  
Sbjct: 116 LYGP-PRRWLVVTGTNGKTTTTSMLQSILEAAELPSLACG---NIGIPVLDALRQTEPR- 170

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
              A+AL+           VE SS  L  H    ++  AG+  N+  DH+D+H   Q Y 
Sbjct: 171 ---AEALA-----------VELSSFQL--HWAPSVRPTAGAILNIAEDHLDWHGGMQPYI 214

Query: 228 NAKMR 232
           +AK R
Sbjct: 215 DAKAR 219


>gi|52841572|ref|YP_095371.1| FolC bifunctional protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628683|gb|AAU27424.1| FolC bifunctional protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 428

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 132/324 (40%), Gaps = 57/324 (17%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-T 163
           A +L  + P   ++ V GT+GK S  + ++ I  +SG   F++G  ++      + R+  
Sbjct: 36  AQKLNLQRPNCKVITVAGTNGKGSTVTALETIYHQSG---FRVGTYTSPHLLVFNERIRI 92

Query: 164 TPSPIY---LAKALS------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             +PI    L KA S      Y ++     ++  A+     QH LD I L  G    L  
Sbjct: 93  NLTPIQDKDLCKAFSVIEEARYPTNLTYFEMATLAALWYFKQHDLDLIILEVGLGGRLDA 152

Query: 215 DH-----------IDYHQTQQAYFNAKMRL--FEE--LLPKESPAIIYADDAYSKEVMKR 259
            +           ID+    Q++    + L  +E+  +L K  P  IYAD +  K +++ 
Sbjct: 153 TNIVDTDLAIITTIDF--DHQSFLGDTLELIGYEKAGILRKNKP-FIYADLSPPKSIVEF 209

Query: 260 AHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           A   G      G    YQ +  H    C            +GK F+ L     + Q+ +A
Sbjct: 210 AVQLGASSYLYGKDYFYQEEADHWGVTC------------QGKLFEQL--TRPKIQLRSA 255

Query: 316 LVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
             A   C  +  D  +  ++L+K   L  +PGR +     +    I  D +H   S+ ++
Sbjct: 256 AAAVMACYLMQNDLPVSYKNLKKAMELIYIPGRLQLQKGKT---DILYDVSHNLQSVRLL 312

Query: 373 LKNIRTIT-SGRIIVVFGCGGDRD 395
              ++ I   G+I  VF    D+D
Sbjct: 313 ADTVKKINVKGQIHAVFSALKDKD 336


>gi|322375569|ref|ZP_08050081.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C300]
 gi|321279277|gb|EFX56318.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C300]
          Length = 444

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITANAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|281492643|ref|YP_003354623.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376307|gb|ADA65798.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 443

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 33/192 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH DY +  +   +A    F++        I     AY ++V  R   A   +  
Sbjct: 171 TNIDFDHPDYFEGIEDVTSA----FQDYANNIKKGIF----AYGEDVNLRKLTAKAPIYY 222

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAA 319
            G++            +  + +  S  G  FD          F+ P  G+  V NAL   
Sbjct: 223 YGFEAN--------DDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPAYGKHNVLNALSVV 274

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIR 377
            +C  +G+D   V +HL     V  RF    T  + G   +  D+AH    +E  L   R
Sbjct: 275 AVCHNLGLDMTEVADHLLTFRGVKRRF----TEKKVGETVIIDDFAHHPTEIEATLDAAR 330

Query: 378 TITSGR-IIVVF 388
                R I+ VF
Sbjct: 331 QKYPDREIVAVF 342


>gi|254446684|ref|ZP_05060159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
 gi|198256109|gb|EDY80418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
          Length = 429

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 21/118 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALS 175
           I+ +TGT+GK+++  F+      +G+ ++  G     ISS   D+               
Sbjct: 107 IVVITGTNGKTTLTEFITSAFSSAGIEAYACGNIGRPISSLVADD--------------C 152

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            L +  V  VS   S       RL    L+   +TN   DH+D H++ ++YF  K  L
Sbjct: 153 NLEAIAVCEVS---SFQAEITKRLHADSLL---WTNFDEDHLDRHKSLESYFKCKYTL 204


>gi|71281643|ref|YP_268601.1| cyanophycin synthetase [Colwellia psychrerythraea 34H]
 gi|71147383|gb|AAZ27856.1| cyanophycin synthetase [Colwellia psychrerythraea 34H]
          Length = 939

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 157/388 (40%), Gaps = 53/388 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALS 175
           I  +TGT+GK++ +  +  I + +G     +G TST   +  D +L+    +     +  
Sbjct: 498 IAGITGTNGKTTTSRMLAHILKSAG---HVVGMTSTDGVYV-DGQLSVKGDMTGPVSSQI 553

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L    V    +E +  G+ +  L   +    +  N+  DH+           A+++   
Sbjct: 554 VLRDPSVDIAVLETARGGIARSGLGYNECDVAACINVQEDHLGLRGIDTLDQLAEVKRIV 613

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCR-----VLSVGYQ---------GKFIHLKK 281
             + K+S  ++ ADD    + +K A +   +      ++ G+          G+ + L+K
Sbjct: 614 VEVAKDS-VVLNADDP---QCLKMAEHTKAKHLCYVTMNTGHSLVREHIRAGGRAVVLEK 669

Query: 282 VCAIHNKQQVTISVEGKDFDFLFP--LPGEFQ------VYNALVAAGLCIAIGIDSALVL 333
                N   +TI   G     L+   +P   +      V NA+ AA L   +      + 
Sbjct: 670 GI---NGDMITIFDNGTHIPLLWTHLIPATLEGKALHNVQNAMFAAALAYCLDKPLEAIQ 726

Query: 334 EHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVV 387
           + L       +  PGR      +    R+ +DYAH ++ +  +  L +   +   RI V+
Sbjct: 727 QGLRTFTTTFYQAPGRMNVF--DEHHFRVILDYAHNADGVRCMSELASKLEVKGKRITVL 784

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPR----SEDPE----KIRAEIIHGIPG 438
            G G  RD+    I  K A    DI I   DDN R    +E PE     +RAE I     
Sbjct: 785 AGPGDRRDEDIVNI-AKAAAGHFDIYICKADDNRRGRGVNEVPELLASSLRAEGIDESQI 843

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    + +EAI   +E+ N  D+L++ G
Sbjct: 844 YC-ISDEVEAINKGLELANTDDLLMIFG 870


>gi|86148538|ref|ZP_01066825.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
           MED222]
 gi|85833684|gb|EAQ51855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
           MED222]
          Length = 438

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 25/154 (16%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKR 259
           + L A +F NL  DH+D +Q    Y +AK+R+F         AI+  +D   Y  + M  
Sbjct: 173 LNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIFN----NAQCAIVNREDKETYPDQTMS- 227

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                  +++ G   +   +  +  I     N + V  S +         L G   V NA
Sbjct: 228 -------LVTFGLDDQEFGVATIDGIEWLIDNGKPVLPSQD-------LTLVGRHNVANA 273

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           LV+  L   +GID +  LE L+  + +  R + V
Sbjct: 274 LVSLALLKQVGIDYSKSLEALKAYNGLTHRCQVV 307


>gi|114564396|ref|YP_751910.1| UDP-N-acetylmuramate [Shewanella frigidimarina NCIMB 400]
 gi|114335689|gb|ABI73071.1| UDP-N-acetylmuramate [Shewanella frigidimarina NCIMB 400]
          Length = 479

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 117/303 (38%), Gaps = 55/303 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK+S +S +  + +  G    F IG      +F    RL   S  ++ +A  
Sbjct: 109 VLAVAGTHGKTSTSSMLAWVLEYCGYEPGFLIG--GVPQNFGVSARLGN-SVFFVVEADE 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    +        NL  DH D      A   A  R F 
Sbjct: 166 YDSA------FFDKRSKFVHYHPRTLV------INNLEFDHADIF----ADLAAIQRQFN 209

Query: 236 ELL---PKESPAIIYADDAYSKEVMKRAHNAGC----------RVLSVGYQGKFIHLKKV 282
            ++   P E   I  +D     E +++  + GC            L+ G     +++   
Sbjct: 210 HVIRTVPGEGKVIWPSD----VEAVQQVIDMGCWSEQEIYSKATSLTTGLAEHSVNVSAN 265

Query: 283 CAIHNKQQV-TISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSAL 331
               N  Q  TI+ +G +F+ LF           L G+  + NA++A      +G+  + 
Sbjct: 266 QGEPNAWQPRTIADDGHEFEVLFKGESQGIVNWSLIGQHNIENAIMAIAAARHVGVAPSH 325

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS------GRII 385
            +E L +      R E + T   G  +Y D+AH   ++   L+ +R   +      G II
Sbjct: 326 AIEALAQFSPPKRRLELLAT-VNGVSVYDDFAHHPTAIATTLQGLRAKVASSDNANGNII 384

Query: 386 VVF 388
           VV 
Sbjct: 385 VVL 387


>gi|315655249|ref|ZP_07908150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
 gi|315490504|gb|EFU80128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
          Length = 483

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 103/260 (39%), Gaps = 30/260 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L   + + P +   R      +DSR +  G +FVA+ G   DGH F+     
Sbjct: 1   MIDMTLDALREAIGLEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVAR 60

Query: 66  QGAEAIVVS------------SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +G +  +VS            +A  L   +    S+    +    R  L    ++  G  
Sbjct: 61  RGGKVAIVSHDRTEILNQGWATADELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGT 120

Query: 114 P--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
              + ++ +TG++GK++     +Q+    G +   + P   ++SF  +N +  P  +  A
Sbjct: 121 GKLKLVIGITGSAGKTTTKDLTKQLLSTKGAT---VAP---VASF--NNEVGLPLTVLEA 172

Query: 172 K-ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             +  YL       + + AS  G   +  D   L       +G  H++ + + +A    K
Sbjct: 173 DVSTEYLV------LEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEK 226

Query: 231 MRLFEELLPKESPAIIYADD 250
             + E L P    AI+ ADD
Sbjct: 227 ATILENLGPS-GMAILNADD 245


>gi|315652426|ref|ZP_07905414.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
 gi|315485325|gb|EFU75719.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
          Length = 437

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 127/343 (37%), Gaps = 75/343 (21%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG----KHPENILAVTGTSGKSS 128
           +S    L  ++A I  + P  +    +    +  ++L G    K  E+I A++GT GK++
Sbjct: 45  ISDDIDLFVYTAAIHKDNPEFIKAKEKNIKVMTRAQLLGYVMSKFKESI-AISGTHGKTT 103

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  I   + L      PT ++    +  R      +Y+    ++++       + E
Sbjct: 104 TTSMLSYILLDTNLD-----PTISVGGIVKKIR----GNVYIGNGDTFVTE------ACE 148

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            ++  L+ +   G+ L      N+  DH+D+              F++L           
Sbjct: 149 YTNSFLELYPTVGVIL------NIEEDHLDF--------------FKDL----------- 177

Query: 249 DDAYS--KEVMKRAHNAGC----------RVLSVGYQGKFIHL---KKVCAIHNKQQVTI 293
           DD     K+ +K     GC          R +++GY+G  +        C   N +   I
Sbjct: 178 DDIRDSFKKFVKNTSREGCIIINDKIKNNREITMGYEGNVVRYGTENSDCYAANIRYDAI 237

Query: 294 SVEGKDF--------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                D         D    + G   +YNAL A  +   +G+    +   L +   V  R
Sbjct: 238 GYPTFDLVHKEETYEDVKLCVGGNHNIYNALAAVCVAFELGVGIEDIRRGLLEFKGVDRR 297

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           FE  G    G  I  DYAH  + +   L   +     R++VVF
Sbjct: 298 FEIKG-KLDGITIVDDYAHHPSEISATLNIAKRYPHDRLVVVF 339


>gi|239928208|ref|ZP_04685161.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291436539|ref|ZP_06575929.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339434|gb|EFE66390.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
          Length = 462

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 35/225 (15%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKR------------AHNAG 264
           H    A      + FE  + +  P    +I AD   ++E+ +R            A +A 
Sbjct: 190 HHANYASMEEIHQSFETFVGRIVPGGTLVISADHEGARELTRRLDGAVRTVTYGEAEDAD 249

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            RVLSV  QG             K +VT+ ++G    F   +PG    +NA+ A     A
Sbjct: 250 VRVLSVVPQGL------------KSEVTVELDGAPLTFTVSVPGRHYAHNAVAALAAGAA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           +G+  A +   L     V  R +  G  + G ++   YAH    +   L+ +R      R
Sbjct: 298 LGVPPAELAPALAAYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMTADLEAMRAAAGDSR 356

Query: 384 IIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           I+VVF        R+ GK   MG+ AL LAD ++V D  P  EDP
Sbjct: 357 ILVVFQPHLFSRTRELGKE--MGR-ALALADASLVLDVYPAREDP 398


>gi|319946445|ref|ZP_08020682.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus australis
           ATCC 700641]
 gi|319747413|gb|EFV99669.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus australis
           ATCC 700641]
          Length = 444

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY    +  FNA    F +   + S A+ IY +D    E+ +   NA     
Sbjct: 171 TNIDFDHPDYFTGLEDVFNA----FNDYAKQISKALFIYGED---PELRRITANAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G+D   F  P  G   + NA    GL    G 
Sbjct: 224 GFEEEGNDFVASDLLRSTTGSTFTVHFRGEDLGQFQIPSFGRHNIMNATAVVGLLYIAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLDLVREHLKTFGGVKRRF 302


>gi|313633042|gb|EFR99962.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria seeligeri FSL
           N1-067]
          Length = 407

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 103/277 (37%), Gaps = 46/277 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +          I PTS                 YL    +  
Sbjct: 64  IAITGSHGKTSTTGLLSHVVG-------AIRPTS-----------------YLIGDGTGS 99

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G  + ++EA  +   Q      K      TN+  DH DY ++    FNA    FE L
Sbjct: 100 GTKGAEYFALEACEY---QRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 152

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+     A   +V  R       ++  G+ G+    +    I         V  
Sbjct: 153 GKQVKKAVF----ALGDDVELRKLTLDIPIIYFGF-GEENEFQAKNVIKETTGTRFDVYH 207

Query: 298 KDFDFL--FPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +D +FL  F +P  G+  V NAL    LC   G+    V   L+    V  RF       
Sbjct: 208 RD-EFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVKRRFSIT---D 263

Query: 354 RGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
           +G ++ V DYAH  + +   +   R      +I+ VF
Sbjct: 264 KGNQVLVDDYAHHPSEIRATVNAARQKYPDKKIVAVF 300


>gi|217032142|ref|ZP_03437641.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298736442|ref|YP_003728968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
 gi|216946132|gb|EEC24741.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298355632|emb|CBI66504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
          Length = 493

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 143/336 (42%), Gaps = 68/336 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKAL 174
           ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D    L   S IY+A+A 
Sbjct: 170 VIAITGSFGKTSTKNFLLQILQATFNAHASPKSVNTLLGLANDINQNLDDRSEIYIAEAG 229

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   ++G     ++  +H ++ H +            +G  H++Y +T +     K  L 
Sbjct: 230 A--RNKG----DIKEITHLIEPHLV--------VVAEVGEQHLEYFKTLENICETKAELL 275

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVT 292
           +                      KR   A C  +     Y  K   L  V ++    Q T
Sbjct: 276 DS---------------------KRLEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQST 314

Query: 293 ISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHV 341
           +  +G  F+ L           + GEF  YN  +A+ + IA  +G+++  +   + +L+ 
Sbjct: 315 L--KGTSFEMLLDSVWESFETKVLGEFSAYN--IASAILIAKHLGLETERIKRLVLELNP 370

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGR-IIVVFGCGGDRDQGK 398
           +  R + +  N    +I +D +   N L+ +L+ IR  ++  GR +IV  G      +  
Sbjct: 371 IAHRLQLLEVNQ---KIIIDDSFNGN-LKGMLEGIRLASLHKGRKVIVTPGLVESNTESN 426

Query: 399 RPIMGKIALDLADIAIVTDD-NPRS-----EDPEKI 428
             +  KI   + D+AI+T + N ++     + P+KI
Sbjct: 427 ETLAQKID-GVFDVAIITGELNSKTIASQLKTPQKI 461


>gi|161723236|ref|NP_268197.2| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|25014077|sp|Q9CE10|MURC_LACLA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|326407576|gb|ADZ64647.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 443

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 33/192 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH DY +  +   +A    F++        I     AY ++V  R   A   +  
Sbjct: 171 TNIDFDHPDYFEGIEDVTSA----FQDYANNIKKGIF----AYGEDVNLRKLTAKAPIYY 222

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAA 319
            G++            +  + +  S  G  FD          F+ P  G+  V NAL   
Sbjct: 223 YGFEAN--------DDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPAYGKHNVLNALSVV 274

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIR 377
            +C  +G+D   V +HL     V  RF    T  + G   +  D+AH    +E  L   R
Sbjct: 275 AVCHNLGLDMTEVADHLLTFRGVKRRF----TEKKVGETVIIDDFAHHPTEIEATLDAAR 330

Query: 378 TITSGR-IIVVF 388
                R I+ VF
Sbjct: 331 QKYPDREIVAVF 342


>gi|322388819|ref|ZP_08062416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
 gi|321140438|gb|EFX35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
          Length = 457

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 11/105 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I  G +FV + G + DGH FI  A   GA A+ +S     Q+ +     + P ++V
Sbjct: 32  DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGA-AVTLSE----QEVA-----DHPYILV 80

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           ++        A+    K   ++ AVTG++GK++    +  +   S
Sbjct: 81  EDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLSTS 125


>gi|218258175|ref|ZP_03474577.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225698|gb|EEC98348.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
          Length = 453

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 111/290 (38%), Gaps = 48/290 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++       I +++G+    +G    + +         P  +Y+      
Sbjct: 113 MICITGSNGKTTTTMLTYHILRQAGV---DVGLAGNVGNSLALQVAEDPHAVYV------ 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   K       N+  DH+D Y+   Q Y +AK R+ +
Sbjct: 164 ----------IELSSFQLDN--MYDFKADIAILLNITPDHLDRYNYEMQNYVDAKFRILQ 211

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                E   I + DD   ++E+ KR   A        Y     H   V      +++ I 
Sbjct: 212 NQTA-EDAFIFWNDDPIIAREIAKRHPEATL------YPFAETHEAGVKGYTEDKKIRIE 264

Query: 295 VEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                F     L  L G   +YN+L       A GI S LV  H E L       +F G 
Sbjct: 265 TSNGTFTMEQDLLALSGTHNLYNSL-------ASGIASKLVDIHDENLRASLS--DFTGV 315

Query: 352 NSRGGRIY----VDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCGGDRD 395
             R  ++     VDY + S +  +      ++++T+  ++++ G     D
Sbjct: 316 EHRLEKVARVRGVDYINDSKATNVNSCWYALQSMTTPLVLILGGTDKGND 365


>gi|148658617|ref|YP_001278822.1| FolC bifunctional protein [Roseiflexus sp. RS-1]
 gi|148570727|gb|ABQ92872.1| FolC bifunctional protein [Roseiflexus sp. RS-1]
          Length = 453

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 300 FDFLFPLPGEFQVYNALVAAGLCI-----AIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           FD    LPG FQ  NA +A G  +      + I    +   L      PGR E +     
Sbjct: 264 FDIAPSLPGVFQKVNARLATGAALLLRDAGLPIADDAIARGLADAR-WPGRMEIIDGAP- 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I +D AH   S+  +++++R +  + R +VVFG   D+D  +  ++ ++A  +  + 
Sbjct: 322 --PIVLDGAHNGESMRQLVQSLRCLFPNRRYVVVFGASRDKDLER--MLPELAPAVDALV 377

Query: 414 IVTDDNPRS 422
           +    +PR+
Sbjct: 378 LTASRHPRA 386


>gi|261417495|ref|YP_003251178.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373951|gb|ACX76696.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328089|gb|ADL27290.1| putative UDP-N-acetylmuramate--alanine ligase murC [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 475

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 138/331 (41%), Gaps = 43/331 (12%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAV 120
            + +G  A+VVS+A         I  + P L          +  S +  K       +A+
Sbjct: 67  GVVEGLTAVVVSTA---------IEDSNPDLKRAKELGVPVMHRSEMLAKISKEARTIAI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +GTSGKS+V + V  I   +GL    +     ++  AQ             K  + +S +
Sbjct: 118 SGTSGKSTVTAMVYHILDYAGLQPSVMTGAGLVNLQAQ------------GKIGNAVSGK 165

Query: 181 GVTHVS-VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           G   V+ V+ S   L ++  +      G   N+ +DH +  + +Q +    ++  + +L 
Sbjct: 166 GEWLVAEVDESDGTLVRYEPE-----IGVILNIDKDHKEISELEQIF----LKFSQNVL- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEG 297
             +  I+  +DA+    + +  +AG R    GY+  ++ ++ +   ++    Q  +    
Sbjct: 216 -SAGHILIVNDAHP---LAKKFSAG-REFDFGYE-SYVSVQGIDFKSVGTHIQFRVRHGN 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +   F  PLPG+  + NAL A    +  G+      + L     V  R + +GT + G  
Sbjct: 270 ELVKFEIPLPGKHNMENALAATAAALRAGVSLHTCADALSSFPGVFRRHQILGTFN-GIT 328

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  D+AH    +   +K+ +  T GR+I  F
Sbjct: 329 LVDDFAHNPAKIAASIKSAQDFTEGRVIAWF 359


>gi|171913321|ref|ZP_02928791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 457

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)

Query: 173 ALSYLSSQGVTH--VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           ALS ++  G T+  ++VE SS  L+   +   +     + N   DH+D +   +AYF AK
Sbjct: 158 ALSEVAVSGETYDLLTVEVSSFQLET--ITSFRPRVAVWLNFAPDHLDRYPDNEAYFAAK 215

Query: 231 MRLFEELLPKESPAIIYA 248
            R+F+ + P +  AII A
Sbjct: 216 KRIFDYMTPNDV-AIIRA 232


>gi|120555944|ref|YP_960295.1| hypothetical protein Maqu_3034 [Marinobacter aquaeolei VT8]
 gi|120325793|gb|ABM20108.1| protein of unknown function DUF403 [Marinobacter aquaeolei VT8]
          Length = 312

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 15/135 (11%)

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP-----GRFEFV----G 350
           +DFL  + G  Q+ N L+A  +    G D   V  +LE+  +       G  +F+    G
Sbjct: 130 YDFLNEIVGRCQMLNGLLAGCMSHDEGYDFIRVGRNLERADMATRQIEVGALQFLDGWDG 189

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T + GG ++       ++ +M   N+R   SG +++ F    +      P    +   L+
Sbjct: 190 TETYGGLLWTSVLRYQSAFQMYRHNVRRKVSGPLVIRFLLQNE------PFPRSVLHSLS 243

Query: 411 DIAIVTDDNPRSEDP 425
           ++A      PR+E P
Sbjct: 244 EVAGALGRLPRNEIP 258


>gi|283770818|ref|ZP_06343710.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283460965|gb|EFC08055.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 437

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDLTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|319788248|ref|YP_004147723.1| UDP-N-acetylmuramate [Pseudoxanthomonas suwonensis 11-1]
 gi|317466760|gb|ADV28492.1| UDP-N-acetylmuramate [Pseudoxanthomonas suwonensis 11-1]
          Length = 467

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 152/396 (38%), Gaps = 54/396 (13%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS---LFASR-LYGKH 113
           + P  I+  AE +V+ +A S        R N  +  V+D+ R++ S     A R L G+ 
Sbjct: 54  YDPAHISAAAEEVVIGNALS--------RGNAAVEQVLDDGRRYTSGAQWLAERVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               LAV GT GK++  S +  + Q +G    F +G  +    F    R+ +    ++ +
Sbjct: 105 --TTLAVAGTHGKTTTTSLLAFLLQAAGRDPGFLVGGVA--EDFGTSARIGSGRE-FVVE 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           A  Y ++               D+  +    +       NL  DH D          A  
Sbjct: 160 ADEYDTAF-------------FDKRSKFVHYRPTVAILNNLEYDHADIFPD----LAAIQ 202

Query: 232 RLFEELL---PKESPAIIYADDAYSKEVMKRA----------HNAGCRVLSVGYQGKFIH 278
           R F  L+   P+    ++  +DA+  EV+               A   +   G    F  
Sbjct: 203 RQFHHLVRTVPRAGRLVVNGEDAHLAEVLAMGCWTPLETFGLEGADVAIARAGGGSGFDW 262

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             ++ A      V +    +    L+PL G   V NAL A     A+G+  A V   L  
Sbjct: 263 SARLLAADGSAFVVLQDGREVATVLWPLLGRHNVMNALAALAAAHAVGVAPADVAPALAG 322

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ- 396
            H V  R E +G  + G  +Y D+AH   ++   L+ +R  +   RI+V      +  + 
Sbjct: 323 FHSVKRRLEVLGEPA-GITVYDDFAHHPTAIRTTLEGLRAKVGDARIVVAMEPRSNSMRL 381

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           G        +LDLAD+ +       + D  K+ A +
Sbjct: 382 GAHADALAPSLDLADVVVFLHRPELAWDAGKVVAAV 417


>gi|282917000|ref|ZP_06324758.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319487|gb|EFB49839.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 437

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +    + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG-LPESDYFAFEACEYRRHFLSYK 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +                           TN+  DH DY +     F+A    F+E+
Sbjct: 163 PDYAI--------------------------MTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G++    I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF    T   
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDLTNIKEALETFGGVKRRFN--ETTIA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              I  DYAH    +   ++  R
Sbjct: 306 NQVIVDDYAHHPREISATIETAR 328


>gi|268590480|ref|ZP_06124701.1| FolC protein [Providencia rettgeri DSM 1131]
 gi|291314159|gb|EFE54612.1| FolC protein [Providencia rettgeri DSM 1131]
          Length = 429

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 22/142 (15%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRD-QG 397
           +PGRF+ +G       + +D AH  ++   ++  +  +    + RI+ V G  GD+D +G
Sbjct: 294 LPGRFQIIGEKPL---MILDVAHNPHAAGYLVSKLAALPETKNRRILAVVGMLGDKDIKG 350

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML- 456
               + +   D   +A +T+           R   +  +  ++   N+ E++  A +   
Sbjct: 351 TLECLSQQVTDWY-LAPLTE----------FRGADVAQLSQYLPTANQFESVEKAWQQAC 399

Query: 457 ---NKQDVLVVAGKGHETVHIV 475
              N+QDV+VV G  H   H++
Sbjct: 400 VDANEQDVIVVCGSFHTVAHVM 421


>gi|320540407|ref|ZP_08040057.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
 gi|320029338|gb|EFW11367.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
          Length = 439

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 52/322 (16%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           Q     A+ IVVS   +L   + +  ++  + +V +   F          +    I+A+T
Sbjct: 60  QGWLLAADLIVVSPGVALATPALSAAADAGVEIVGDVELFCR--------EAQAPIVAIT 111

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GKS+V + V Q+ + +G   + +G    I                   ALS L  + 
Sbjct: 112 GSNGKSTVTTLVGQMAKAAG---WAVGIGGNIG----------------LPALSLLRQEC 152

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPK 240
             +V +E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E     
Sbjct: 153 QLYV-LELSSFQLETTH--SLRTAAATMLNVTEDHMDRYPFGLQQYRVAKLRVYE----N 205

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  DD  +  V  R  +A C  +S G      HL       N QQ    +  +  
Sbjct: 206 AGVCVVNTDDTLTLPV--RGTDARC--VSFGVDVGDYHL-------NCQQGETWLRVRGE 254

Query: 301 DFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             L      L G     NAL A  L  A+ I  A  L+ L     +P RF++V     G 
Sbjct: 255 KVLNTREMKLTGCHNYTNALAALALADAVNIPRASSLKALTTFTGLPHRFQWV-WECNGV 313

Query: 357 RIYVDYAHTS-NSLEMILKNIR 377
           R   D   T+  S E  LK ++
Sbjct: 314 RWINDSKATNVGSTEAALKGLQ 335


>gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
 gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
          Length = 457

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPIL 93
           DSR      +FV +VG K D H F+      G    + S    +S  DF+        I+
Sbjct: 32  DSREANKNSLFVPVVGEKNDAHKFLESVYDAGCRVAISSRKDIFSKPDFN--------IV 83

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V++T K L      L  K    ++ VTG+ GK++
Sbjct: 84  LVEDTIKALQSLGIYLRSKLSLPLVGVTGSVGKTT 118


>gi|228941001|ref|ZP_04103559.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973932|ref|ZP_04134507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980521|ref|ZP_04140831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228779341|gb|EEM27598.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228785798|gb|EEM33802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818680|gb|EEM64747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326941682|gb|AEA17578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 450

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGC 265
            +F NL   H+DYH T++ Y  AK  +F+     +  ++I ADDA   +VM   A   G 
Sbjct: 184 AAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDY-SVINADDA---DVMALSADTKGQ 239

Query: 266 RVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           ++L S   + +     K  A++ K +  + V          LPG+  + N L A  +   
Sbjct: 240 KILFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLPGQHNLENILAAMSIAKL 293

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTS 366
           +G  +  +   L++   V  R E+V T N+R  + Y D   T+
Sbjct: 294 LGTSNEAITIVLKRFTGVKHRLEYVTTINNR--KFYNDSKATN 334


>gi|90962026|ref|YP_535942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius UCC118]
 gi|118595662|sp|Q1WT99|MURD_LACS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90821220|gb|ABD99859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           salivarius UCC118]
          Length = 458

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 25/217 (11%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--------GSFTN 211
           N+  T    Y+A  +   +SQ    V+ EA+S       L   +L+            TN
Sbjct: 134 NQGQTEGKAYVAGNIGVPASQ----VAQEATSKDTIVTELSSFQLLGITEYHPKVAVLTN 189

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   HIDYH T++ Y NAKMR+      ++   ++  D+   +E+ +R+     +++   
Sbjct: 190 IYEAHIDYHGTRENYVNAKMRIVMNQT-EDDYFVVNWDNEEWQELSQRSK---AKIVPFS 245

Query: 272 YQGKFIHLKKVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             GK      V    +  K+   + V+         +PG   V NAL A  +    G  +
Sbjct: 246 RLGKSKDGAYVAGGYLFYKEDKIMPVDN------IKVPGTHNVENALAAIAVAKIFGKSN 299

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             + E L     V  R ++V T   G + Y D   T+
Sbjct: 300 EDIKEVLTTFSGVRHRTQYV-TTLNGRKFYNDSKATN 335


>gi|54294230|ref|YP_126645.1| hypothetical protein lpl1295 [Legionella pneumophila str. Lens]
 gi|53754062|emb|CAH15535.1| hypothetical protein lpl1295 [Legionella pneumophila str. Lens]
          Length = 428

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 132/324 (40%), Gaps = 57/324 (17%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-T 163
           A +L  + P   ++ V GT+GK S  + ++ I  +SG   F++G  ++    A + R+  
Sbjct: 36  AQKLNLQRPNCKVITVAGTNGKGSTVTALETIYHQSG---FRVGTYTSPHLLAFNERIRI 92

Query: 164 TPSPIY---LAKALS------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             +PI    L +A S      Y ++     ++  A+     QH LD I L  G    L  
Sbjct: 93  NLAPIQDKDLCQAFSVIEEARYPTNLTYFEMATLAALWYFKQHGLDLIILEVGLGGRLDA 152

Query: 215 DH-----------IDYHQTQQAYFNAKMRL--FEE--LLPKESPAIIYADDAYSKEVMKR 259
            +           ID+    Q +    + L  +E+  +L K  P  IYAD +  K V++ 
Sbjct: 153 TNIVDTDLAIITTIDF--DHQNFLGDTLELIGYEKAGILRKNKP-FIYADLSPPKSVVEF 209

Query: 260 AHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           A   G      G    YQ +  H    C            +GK F+ L     + Q+ +A
Sbjct: 210 AVQLGASSYLYGKDYFYQEEADHWGVTC------------QGKPFEQL--TRPKIQLRSA 255

Query: 316 LVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
             A   C  +  D  +  ++L+K   L  +PGR +     +    I  D +H   S+ ++
Sbjct: 256 AAAVMACHLMQNDLPVSYKNLKKAMELIYIPGRLQLEKGKT---DILYDVSHNPQSVRLL 312

Query: 373 LKNIRTIT-SGRIIVVFGCGGDRD 395
              ++ I   G+I  VF    D+D
Sbjct: 313 ADTVKKINVKGQIHAVFSALKDKD 336


>gi|325102889|ref|YP_004272543.1| UDP-N-acetylmuramate/alanine ligase [Pedobacter saltans DSM 12145]
 gi|324971737|gb|ADY50721.1| UDP-N-acetylmuramate/alanine ligase [Pedobacter saltans DSM 12145]
          Length = 453

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 15/110 (13%)

Query: 287 NKQQVTISVEGKDFDFLFP------------LPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           + + V I VE  +F F F             LPG+  + NA+ A  + + +GI    +  
Sbjct: 243 DAKAVNIRVEDGEFRFDFSNDEIEMKDLVLGLPGQHNIENAVAAIQVALKMGISQQDIKS 302

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR 383
            L+    V  RFE++        +Y+ DYAH    L    + +RT+   R
Sbjct: 303 GLKSFKGVKRRFEYIVKTD--AFVYIDDYAHHPEELRACFRAVRTLYPTR 350


>gi|298507099|gb|ADI85822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens KN400]
          Length = 452

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +   V  V VE SS  L+  R    +       N+  DH+D + T Q Y +AK R+FE  
Sbjct: 153 TGAAVDRVVVEISSFQLEWIR--SFRPTVAVLLNITEDHLDRYATYQEYIDAKARIFENQ 210

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
              +  A++  DD     +  R   A   V  +  Q     G F     +   H  +Q  
Sbjct: 211 TASDW-AVLNVDDPIVAGLTGRTRAA---VFPMSRQRELAEGIFYRDGVIIFRHAGRQER 266

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +       F + G   + N + +    + +G D+   L  +E    +P R E V   
Sbjct: 267 FPTD------RFRITGVHNIENIMASLAAALLLGCDADRALACVEAFGGLPHRMELV-RE 319

Query: 353 SRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             G R + D   T+  S+E  L +   IT      +   G D+     P+ G +A
Sbjct: 320 LDGVRYFEDSKATNVGSVEKALASFNDIT------LIAGGKDKGGSYAPLAGLVA 368


>gi|119505603|ref|ZP_01627674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
 gi|119458546|gb|EAW39650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
          Length = 1110

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 113/277 (40%), Gaps = 26/277 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVL 268
           T++  DH+++H++  +    KM +   +       ++  D AY   +   A   +   +L
Sbjct: 500 TDIQADHMEFHESVASVITTKMEIIWGV-ESGGTVVLNRDSAYFATLHGLALQRSDINIL 558

Query: 269 SVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G   +     +   +   Q V  + V  + F +   LPG     N+L+A  + ++ G+
Sbjct: 559 TFGQHPQADICAEEIVLEPVQSVIQVRVFQQTFKYTLSLPGMHMALNSLIAIAVIVSEGV 618

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYV-DYAHTSNSLEM-----ILKNIRTIT 380
           D A  L   E +     R + +  T++ G RI + D +  +N   +     +L+ +R  +
Sbjct: 619 DLATSLPVFENIGAETRRNQKIRVTSASGARIQILDDSFNANPASIRSNLHLLELMRPES 678

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I+V    G+        MG  AL     A+  D N    D      +  H +   I
Sbjct: 679 EGRRILVLSDMGE--------MGSEALHY-HTALAQDINDSQIDIFLSIGDYCHALDQLI 729

Query: 441 EKG------NRIEAIRTAI-EMLNKQDVLVVAGKGHE 470
           E        N +EA+ T + E++   D++   G   E
Sbjct: 730 ENRITHKHFNSVEALETFLQEVVRSGDIVSFKGSARE 766


>gi|222086443|ref|YP_002544977.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
 gi|221723891|gb|ACM27047.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
          Length = 471

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D + P+PG   + NA  A  +   +GI +  + + L     V  RF   G    G +++ 
Sbjct: 277 DLVMPMPGRHNISNATAAVAVANRLGISNEAIAKGLASFGGVKRRFTLTG-EWNGVKVFD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387
           DY H    ++ +LK  R    GR+I V
Sbjct: 336 DYGHHPVEIKAVLKAAREACKGRVIAV 362


>gi|163852359|ref|YP_001640402.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218531119|ref|YP_002421935.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240139696|ref|YP_002964173.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
 gi|229620038|sp|A9VWV4|MURC_METEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766010|sp|B7KSC2|MURC_METC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163663964|gb|ABY31331.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218523422|gb|ACK84007.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240009670|gb|ACS40896.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
          Length = 468

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 128/323 (39%), Gaps = 51/323 (15%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRS 140
           S  IR + P L+    R+   +  + +  +    ++ +AV GT GK++  S V  +    
Sbjct: 73  STAIRRDNPELIEARERRLPVVRRAEMLAELMRFKSCVAVAGTHGKTTTTSLVATLLDAG 132

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            L    I     I+++  + R+                      + VEA     D+    
Sbjct: 133 NLDPTVIN-GGIINAYGTNARMGAGD-----------------WMVVEA-----DESDGT 169

Query: 201 GIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +KL A     TN+  +H+D+  + +A  +A  R F + +P    A++  D    ++++ 
Sbjct: 170 FLKLPADVAIVTNIDPEHLDHFGSFEAIKDA-FRRFIDNIPFYGFAVMCIDHPIVQDLVG 228

Query: 259 RAHN-----------AGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
              +           A  R++ +   G Q +F    +V     +    + +E    D + 
Sbjct: 229 HIEDRRIITYGENPQADVRLIDIDLKGGQSRF----RVMIRDRRPGFRMEIE----DLVL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG     NA  A  +   +G+ S  + + L     V  RF   G  + G  I+ DY H
Sbjct: 281 PMPGRHNALNATAALAVAHELGVPSDAIRKALAGFGGVKRRFTRTGEWN-GATIFDDYGH 339

Query: 365 TSNSLEMILKNIRTITSGRIIVV 387
               ++ +L+  R  T GR+I +
Sbjct: 340 HPVEIQAVLRAARASTDGRVIAI 362


>gi|118590891|ref|ZP_01548291.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
 gi|118436413|gb|EAV43054.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
          Length = 466

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 12/187 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+D H    A   A  R F E +P    A++  D    + ++    +   RV++
Sbjct: 181 TNIDPEHLD-HYGDFAGVRAAFRQFVENVPFYGFAVMCLDHPEVQTMIGTIEDR--RVVT 237

Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-------DFLFPLPGEFQVYNALVAAGL 321
            G   +  +    V     K   ++++  +         +   P+PG   V NA  A  +
Sbjct: 238 YGANPQADVRYTDVSMDGGKSMFSVTLRDRRSGQVIELNNLTLPMPGLHNVSNATAAIAV 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+ +  + + +     V  RF   GT   G +++ DY H    ++ +L   R  T 
Sbjct: 298 ASQLGVGADELRKGIAAFGGVKRRFTHTGTVG-GVQVFDDYGHHPVEIKAVLHAARESTK 356

Query: 382 GRIIVVF 388
           G++I V 
Sbjct: 357 GKVIAVM 363


>gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
 gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
          Length = 515

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 152/380 (40%), Gaps = 65/380 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R I  G  F+A+VG   DG+ F+ QA+A G    +  S          + ++ P+
Sbjct: 72  ICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAAGCAGAIGRS----------MPTDWPV 121

Query: 93  LVVDNTRKFLSL--FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             V+ +    +L   A     ++  +++ +TG+ GK++  + V    +  G     I  T
Sbjct: 122 GFVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTKAMVALALESLG----HIHQT 177

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                 +++N +  P  +    AL   S   V  + +      L+  R+   K       
Sbjct: 178 QG----SENNHIGVPLTLL---ALPSFSPACVIEMGMNHLGEILELSRI--CKPSVRVVL 228

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY------SKEVM----KRA 260
           N+G  H++   + +    AK  LF +   +    I+ ADD        S + M     R+
Sbjct: 229 NVGPAHMENLGSLEQVALAKGELFRD-SGRGDVCILNADDPLVMAMPVSPDAMIRFFGRS 287

Query: 261 HNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             +  R+L    + G QG    L        +QQ    V G +  FL   PG     NA 
Sbjct: 288 EVSDLRLLNGEVTSGGQGVKFTL--------QQQ---GVPGFETTFL-SCPGIHLASNAC 335

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEM--- 371
            AA +  ++G+      E + K   V    R E + +N +     ++ A+ +N + M   
Sbjct: 336 AAACVATSLGVPLKAASESISKFSPVGMRSRLEAISSNIQ----LINDAYNANPMSMTVA 391

Query: 372 --ILKNIRTITSGRIIVVFG 389
             IL ++     GR +V  G
Sbjct: 392 LEILASVE--CKGRKVVALG 409


>gi|195156429|ref|XP_002019102.1| GL26186 [Drosophila persimilis]
 gi|194115255|gb|EDW37298.1| GL26186 [Drosophila persimilis]
          Length = 342

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            ++A W+F A++   +DG+  IP       E++V+   +  +D++  +      L+VD  
Sbjct: 216 RVKANWMFSAVLDESDDGNYIIPN-----TESVVLGGTHQERDYNTRVCEKDKKLIVDGC 270

Query: 99  RKFL 102
           R+F+
Sbjct: 271 RQFV 274


>gi|332527086|ref|ZP_08403166.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111517|gb|EGJ11499.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
          Length = 473

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 129/338 (38%), Gaps = 50/338 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA+A+V+S+A         ++ + P ++    R+   +  + +  +       +A+ GT
Sbjct: 63  EGADAVVISTA---------VKGDNPEVITARARRIPVVPRAVMLAELMRLRRGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +   +G                +D        +  A A S L S    
Sbjct: 114 HGKTTTTSLVASVLAEAG----------------RDPTFVIGGKLLSAGANSRLGSG--E 155

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++ VEA     D   L+ + ++A   TN+  DH++ +    +   +    F   +P    
Sbjct: 156 YIVVEADES--DASFLNLMPIMA-VVTNIDADHMETYGHDLSRLRSAFVDFIHRMPFYGA 212

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-------CAIHNKQQVTISVE 296
           AI+  DD   + +M         V+S G  G+ + ++ V         +    Q    V 
Sbjct: 213 AIVCGDDPGVRAIMPMLSRP---VVSYGL-GEDVQVRAVDVEALPGGRMRFTAQRRNGVA 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TN 352
             D      LPG   V NAL A  + + + +     +  L     V  RF+  G    + 
Sbjct: 269 LPDLSITLNLPGVHNVCNALAAIAVAMELELPDEPTVRALAGFTGVGRRFQRWGELPVSA 328

Query: 353 SRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
           +RGG  +    DY H    +  ++   R    GR +V+
Sbjct: 329 ARGGGSFTLIDDYGHHPAEMAAVVAAARGAFPGRRLVL 366


>gi|329944587|ref|ZP_08292727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530140|gb|EGF57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 486

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 15/124 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ------DFSATI 86
           V +DSR    G +FVA+ G + DGH  +  A A GA   +VS   + +      +   T 
Sbjct: 31  VVTDSRLATEGALFVAVHGERTDGHAHLGSAGALGAVGAIVSDLEAARSGLIQGERGETE 90

Query: 87  RSNTPILVVDNTRKFLSLFA-------SRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
             +  +++V++T   L   A        R      E   ++A+TG+ GK++     +Q+ 
Sbjct: 91  DPSMGLVLVEDTVTALGALARTHLAGLRRTAADRGERLTVVAMTGSVGKTTTKDLTRQLL 150

Query: 138 QRSG 141
             SG
Sbjct: 151 AASG 154


>gi|228960733|ref|ZP_04122372.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798949|gb|EEM45924.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 433

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K +        +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+   +K+ +          E  N  EAI T +EM+
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE--NWKEAIDTKVEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 AENDVFIITG 417


>gi|16763516|ref|NP_459131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167989999|ref|ZP_02571099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168243459|ref|ZP_02668391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194448105|ref|YP_002044096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197265563|ref|ZP_03165637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198243206|ref|YP_002214078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351465|ref|YP_002225266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855640|ref|YP_002242291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|30316095|sp|Q8ZRU4|MURD_SALTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16418625|gb|AAL19090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194406409|gb|ACF66628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197243818|gb|EDY26438.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937722|gb|ACH75055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271246|emb|CAR36034.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205331455|gb|EDZ18219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205337477|gb|EDZ24241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|206707443|emb|CAR31716.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261245359|emb|CBG23148.1| D-glutamic acid adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991804|gb|ACY86689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301156754|emb|CBW16229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911095|dbj|BAJ35069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|323128446|gb|ADX15876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|326621822|gb|EGE28167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326626492|gb|EGE32835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
 gi|332987079|gb|AEF06062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 438

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDADRELYV-LELSSFQLETT--SSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K    ++ ADDA +  V      A  R +S G      HL       N+QQ    +
Sbjct: 205 ----KAKVCVVNADDALTMPV----RGADERCVSFGVNMGDYHL-------NRQQGETWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             K    L      L G+    NAL A  L  A+G+  A  L+ L     +  RF+ 
Sbjct: 250 RVKGEKVLNVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQL 306


>gi|125983993|ref|XP_001355761.1| GA10855 [Drosophila pseudoobscura pseudoobscura]
 gi|54644078|gb|EAL32820.1| GA10855 [Drosophila pseudoobscura pseudoobscura]
          Length = 342

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            ++A W+F A++   +DG+  IP       E++V+   +  +D++  +      L+VD  
Sbjct: 216 RVKANWMFSAVLDESDDGNYIIPN-----TESVVLGGTHQERDYNTRVCEKDKKLIVDGC 270

Query: 99  RKFL 102
           R+F+
Sbjct: 271 RQFV 274


>gi|229152659|ref|ZP_04280847.1| Folyl-polyglutamate synthetase [Bacillus cereus m1550]
 gi|228630805|gb|EEK87446.1| Folyl-polyglutamate synthetase [Bacillus cereus m1550]
          Length = 433

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K +        +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+   +K+ +          E  N  EAI T +EM+
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE--NWKEAIDTKVEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 AENDVFIITG 417


>gi|161612470|ref|YP_001586435.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161361834|gb|ABX65602.1| hypothetical protein SPAB_00160 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 438

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDADRELYV-LELSSFQLETT--SSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K    ++ ADDA +  V      A  R +S G      HL       N+QQ    +
Sbjct: 205 ----KAKVCVVNADDALTMPV----RGADERCVSFGVNMGDYHL-------NRQQGETWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             K    L      L G+    NAL A  L  A+G+  A  L+ L     +  RF+ 
Sbjct: 250 RVKGEKVLNVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQL 306


>gi|81428361|ref|YP_395361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|122063248|sp|Q38XM9|MURD_LACSS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78610003|emb|CAI55051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 454

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 132/324 (40%), Gaps = 60/324 (18%)

Query: 86  IRSNTPILVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQ-----QICQR 139
           IR + P++     R+   L    L Y     + ++VTG++GK++  + +      Q  Q 
Sbjct: 82  IRYDNPMVAEAIKREIPVLTEPELAYEVSEADWVSVTGSNGKTTTTTLIALMLNYQRAQG 141

Query: 140 SGLSSFQIG-PTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              ++  IG P S ++  + A+D  +T          LS     G T V           
Sbjct: 142 HAYAAGNIGIPLSEVAQKATAKDTMVT---------ELSSFQLMGTTTV----------- 181

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K      TN+   H+DYH T++ Y  AKMR+ +     ++ +  +  +    E+
Sbjct: 182 ------KPKVAVLTNIYEAHLDYHGTRENYVQAKMRIVQ----NQTASDYFVVNWDLPEL 231

Query: 257 MKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              +     +V     L    +G ++   ++C    K +V + V   D +    +PG+  
Sbjct: 232 RTLSQQTKAQVVPFSRLGTSEEGAYVKDGQLCF---KGEVIMPV--TDIN----VPGDHN 282

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLE 370
           V NAL A      +G  +  ++E L     V  R +FV   + G R Y D   T+  + E
Sbjct: 283 VENALAALAAAKLMGQSNEAIIEVLTTFTGVKHRMQFVKEFA-GRRFYNDSKATNMEATE 341

Query: 371 MILKNIRTITSGRIIVVFGCGGDR 394
           + LK+ +     + IV+   G DR
Sbjct: 342 VALKSFK-----QPIVLIAGGLDR 360


>gi|56412398|ref|YP_149473.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|167550679|ref|ZP_02344436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168234890|ref|ZP_02659948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168262189|ref|ZP_02684162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464322|ref|ZP_02698225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820880|ref|ZP_02832880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442341|ref|YP_002039358.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194736856|ref|YP_002113144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197361334|ref|YP_002140969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|200387467|ref|ZP_03214079.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926704|ref|ZP_03217906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238911183|ref|ZP_04655020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|62900669|sp|Q5PDC2|MURD_SALPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56126655|gb|AAV76161.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194401004|gb|ACF61226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194712358|gb|ACF91579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633046|gb|EDX51500.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197092809|emb|CAR58235.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197291916|gb|EDY31266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199604565|gb|EDZ03110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323369|gb|EDZ08564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205324366|gb|EDZ12205.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205342390|gb|EDZ29154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348968|gb|EDZ35599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320084369|emb|CBY94162.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322615947|gb|EFY12864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322620731|gb|EFY17591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623917|gb|EFY20754.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627365|gb|EFY24156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630672|gb|EFY27436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638108|gb|EFY34809.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640594|gb|EFY37245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647735|gb|EFY44220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648084|gb|EFY44551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656884|gb|EFY53170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657406|gb|EFY53678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322663725|gb|EFY59925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666558|gb|EFY62736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672283|gb|EFY68395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676405|gb|EFY72476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322679502|gb|EFY75547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322686169|gb|EFY82153.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195013|gb|EFZ80199.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323200078|gb|EFZ85165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201101|gb|EFZ86170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323209498|gb|EFZ94431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212250|gb|EFZ97074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216555|gb|EGA01281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219904|gb|EGA04382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225816|gb|EGA10036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228642|gb|EGA12771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236744|gb|EGA20820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239755|gb|EGA23802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242197|gb|EGA26226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249379|gb|EGA33295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252288|gb|EGA36139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256622|gb|EGA40352.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262991|gb|EGA46541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265476|gb|EGA48972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271736|gb|EGA55154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 438

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDADRELYV-LELSSFQLETT--SSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K    ++ ADDA +  V      A  R +S G      HL       N+QQ    +
Sbjct: 205 ----KAKVCVVNADDALTMPV----RGADERCVSFGVNMGDYHL-------NRQQGETWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             K    L      L G+    NAL A  L  A+G+  A  L+ L     +  RF+ 
Sbjct: 250 RVKGEKVLNVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQL 306


>gi|329901113|ref|ZP_08272729.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549212|gb|EGF33800.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 471

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 135/339 (39%), Gaps = 56/339 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA+AIV S+A         ++ + P +V    R    +  + +  +    +  +A+ GT 
Sbjct: 64  GADAIVTSTA---------VKEDNPEVVAGRERHIPIVPRALMLAELMRLKRGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +  + GL      PT     F    RLT+        A  ++ ++    
Sbjct: 115 GKTTTTSLVASVLAQGGLD-----PT-----FVIGGRLTSAGANAKLGAGDFIVAE---- 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLP 239
            + E+ +  L+   +  I++I    TN+  DH+     D+++ +QA+ +  +R     LP
Sbjct: 161 -ADESDASFLNLSPV--IEVI----TNIDADHMETYEHDFNKLKQAFVDFTLR-----LP 208

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG- 297
               A++  DD + +E+M R       +++ G+  +  +      A+    Q T+  +G 
Sbjct: 209 FYGIAVLCLDDVHVREIMPRIAKP---IMTYGFHEEADVRAIDARAVGGLMQFTVIQDGY 265

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF------EFVGT 351
                    PG   V NA  A  +   + +      + L + + V  RF       F G 
Sbjct: 266 PPLPISLNQPGMHNVQNACAAIAIARELSVADCDTQKALAEFNGVGRRFTRYGEIAFAGR 325

Query: 352 NSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + G  +    DY H        L   R    GR +V+
Sbjct: 326 DGKPGGTFALVDDYGHHPVETAATLSAARGAYPGRRLVL 364


>gi|168230405|ref|ZP_02655463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469017|ref|ZP_03075001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197248149|ref|YP_002145112.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194455381|gb|EDX44220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197211852|gb|ACH49249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205334952|gb|EDZ21716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 438

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDADRELYV-LELSSFQLET--TSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K    ++ ADDA +  V      A  R +S G      HL       N+QQ    +
Sbjct: 205 ----KAKVCVVNADDALTMPV----RGADERCVSFGVNMGDYHL-------NRQQGETWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             K    L      L G+    NAL A  L  A+G+  A  L+ L     +  RF+ 
Sbjct: 250 RVKGEKVLNVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQL 306


>gi|15673572|ref|NP_267746.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. lactis Il1403]
 gi|281492169|ref|YP_003354149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis KF147]
 gi|30316118|sp|Q9CF91|MURD_LACLA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12724595|gb|AAK05688.1|AE006389_8 UDP-N-acetylmuramoylalanine D-glutamate ligase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281375840|gb|ADA65334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis KF147]
 gi|326407055|gb|ADZ64126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 450

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 30/167 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL   H+DYH +Q+AY  AK R+ E +          +DD     ++   +   CR L+
Sbjct: 187 TNLFSAHLDYHGSQKAYEAAKWRIQENM---------TSDDF----LILNFNQEKCRNLA 233

Query: 270 VGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDF---DFL-----FPLPGEFQVYNALVAA 319
              +        V A   K++V    S +GK +   +++       LPGE  + NAL A 
Sbjct: 234 DKTKA------TVLAFSTKEKVNGAYSKDGKIYFNDEYIMEVSELSLPGEHNLENALAAI 287

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                 G  +  ++E L     V  R +++G    G ++Y D   T+
Sbjct: 288 VASKLQGTKNEAIVEVLTSFAGVKHRLQYLG-EIDGRKVYNDSKATN 333


>gi|88801288|ref|ZP_01116816.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
 gi|88781946|gb|EAR13123.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
          Length = 460

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 33/140 (23%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           I+ +TG++GK++    V +I + +GL+   +G    I  SFAQ                 
Sbjct: 120 IVGITGSNGKTTTTMLVHRILKDAGLN---VGLAGNIGVSFAQQ---------------- 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS---FTNLGRDHID-YHQTQQAYFNAKM 231
                 V  VS E     L   +LDGI+  +      TN+  DH+D Y    + Y  +K 
Sbjct: 161 ------VAEVSHENYVVELSSFQLDGIEKFSSHIAILTNITPDHLDRYEYDFEKYVASKF 214

Query: 232 RLFEELLPKESPAIIY-ADD 250
           R+ +    KES  +IY ADD
Sbjct: 215 RITQN--QKESDYLIYDADD 232


>gi|239978973|ref|ZP_04701497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           albus J1074]
 gi|291450852|ref|ZP_06590242.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces albus
           J1074]
 gi|291353801|gb|EFE80703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces albus
           J1074]
          Length = 476

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+++    ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E 
Sbjct: 162 LAAEPYDVLAVELSSYQL--HWTPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE- 218

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGY 272
                  A +Y     + E + RA +   GCR  +VG+
Sbjct: 219 ---GNRVACVYNTADPATEALVRAADVEEGCR--AVGF 251


>gi|329964640|ref|ZP_08301694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
 gi|328525040|gb|EGF52092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
          Length = 433

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 132/311 (42%), Gaps = 32/311 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K   V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   VV  A     ++ T  
Sbjct: 11  QKCTCVTTDSRNCPEGSLFIALKGDNFNGNAFASKALENGSAYAVVDEA----GYAPT-- 64

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +   ++VDN  + L   A+    +    I+ +TGT+GK++    +  +  +S    +  
Sbjct: 65  GDAHYIIVDNCLRTLQQLANFHRRQLGTRIIGITGTNGKTTTKELMSAVLSQSYHVLYTA 124

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G          +N +  P  +     L   +   +  V + AS  G  +  ++  +   G
Sbjct: 125 GNL--------NNSIGVPLTL-----LRLTTEHDLAVVEMGASHPGDIKELVEIAEPDYG 171

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKRAHNAGC 265
             TN+G+ H++   + +     K  L++ L  ++  S   I+ D+ Y +E+       G 
Sbjct: 172 IITNVGKAHLEGFGSFEGVIKTKGELYDYLRRRKEGSTIFIHYDNPYLREIA-----YGL 226

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGL 321
             ++ G + +     +V    N   +T       EGK       L GE+   NAL A  +
Sbjct: 227 NQITYGSEEELYVSGRVTG--NSPYLTFEWKAGKEGKTHQVQTQLIGEYNFPNALAAVTI 284

Query: 322 CIAIGIDSALV 332
               G++ A +
Sbjct: 285 GRFFGVEPAKI 295


>gi|310778639|ref|YP_003966972.1| FolC bifunctional protein [Ilyobacter polytropus DSM 2926]
 gi|309747962|gb|ADO82624.1| FolC bifunctional protein [Ilyobacter polytropus DSM 2926]
          Length = 409

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I++E K + F   L GE+QV N L A      +GI+S ++     K+   PGRFE     
Sbjct: 233 INIENKKYSF--SLFGEYQVGNFLCAYETLKILGIESEVIQRAAAKVR-WPGRFE---VY 286

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRD 395
           S+   + +D AH +++ E + +N+  + +   ++ V     D+D
Sbjct: 287 SKTPLVILDGAHNADAAEKLRENLNLSFSPEEVVAVVSVLDDKD 330


>gi|307610046|emb|CBW99581.1| hypothetical protein LPW_13511 [Legionella pneumophila 130b]
          Length = 412

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 132/324 (40%), Gaps = 57/324 (17%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-T 163
           A +L  + P   ++ V GT+GK S  + ++ I  +SG   F++G  ++    A + R+  
Sbjct: 20  AQKLNLQRPNCKVITVAGTNGKGSTVTALETIYHQSG---FRVGTYTSPHLLAFNERIRI 76

Query: 164 TPSPIY---LAKALS------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             +PI    L +A S      Y ++     ++  A+     QH LD I L  G    L  
Sbjct: 77  NLAPIQDKDLCQAFSVIEEARYPTNLTYFEMATLAALWYFKQHDLDLIILEVGLGGRLDA 136

Query: 215 DH-----------IDYHQTQQAYFNAKMRL--FEE--LLPKESPAIIYADDAYSKEVMKR 259
            +           ID+    Q +    + L  +E+  +L K  P  IYAD +  K V++ 
Sbjct: 137 TNIVDTDLAIITTIDF--DHQNFLGDTLELIGYEKAGILRKNKP-FIYADLSPPKSVVEF 193

Query: 260 AHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           A   G      G    YQ +  H    C            +GK F+ L     + Q+ +A
Sbjct: 194 AVQLGASSYLYGKDYFYQEEADHWGVTC------------QGKPFEQL--TRPKIQLRSA 239

Query: 316 LVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
             A   C  +  D  +  ++L+K   L  +PGR +     +    I  D +H   S+ ++
Sbjct: 240 AAAVMACHLMQNDLPVSYKNLKKAMELIYIPGRLQLEKGKT---DILYDVSHNPQSVRLL 296

Query: 373 LKNIRTIT-SGRIIVVFGCGGDRD 395
              ++ I   G+I  VF    D+D
Sbjct: 297 ADTVKKINVKGQIHAVFSALKDKD 320


>gi|303327347|ref|ZP_07357788.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302862287|gb|EFL85220.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 457

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 10/180 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++++++A  +A    F   +P     ++  DD   + ++ R       VL+
Sbjct: 179 TNVDEDHLDHYKSREA-IDAAFVQFMNNVPFYGINVVCGDDPGVRALLPRVKRP---VLT 234

Query: 270 VGYQGKFIHLKKV---CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G+     HL+ V     + ++ +V    E K  +   P PG   + NAL A G  +   
Sbjct: 235 YGFAADN-HLRAVPLESGLRSRFEVWREDE-KLGEVSLPQPGRHNILNALAAIGAAMEAD 292

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I        L     V  RFEF G    G  +  DY H    +   L   R +  GR IV
Sbjct: 293 IAFERCARGLGGFGGVGRRFEFKGEKD-GVTVVDDYGHHPAEIAATLATARQVFPGRRIV 351


>gi|229048174|ref|ZP_04193743.1| Folyl-polyglutamate synthetase [Bacillus cereus AH676]
 gi|229129749|ref|ZP_04258716.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-Cer4]
 gi|228653665|gb|EEL09536.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-Cer4]
 gi|228723161|gb|EEL74537.1| Folyl-polyglutamate synthetase [Bacillus cereus AH676]
          Length = 433

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K +        +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+   +K+ +          E  N  EAI T +EM+
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE--NWKEAIDTKVEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 AENDVFIITG 417


>gi|301300388|ref|ZP_07206590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851990|gb|EFK79672.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 437

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 25/217 (11%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--------GSFTN 211
           N+  T    Y+A  +   +SQ    V+ EA+S       L   +L+            TN
Sbjct: 113 NQGQTEGKAYVAGNIGVPASQ----VAQEATSKDTIVTELSSFQLLGITEYHPKVAVLTN 168

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   HIDYH T++ Y NAKMR+      ++   ++  D+   +E+ +R+     R++   
Sbjct: 169 IYEAHIDYHGTRENYVNAKMRIVMNQT-EDDYFVVNWDNEEWQELSQRSK---ARIVPFS 224

Query: 272 YQGKFIHLKKVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             GK      V    +  K+   + V+         +PG   V NAL A  +    G  +
Sbjct: 225 RLGKSKGGAYVADGYLFYKEDKIMPVDD------IKVPGTHNVENALAAIAVAKIFGKSN 278

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             + E L     V  R ++V T   G + Y D   T+
Sbjct: 279 EDIKEVLTTFSGVRHRTQYV-TTLNGRKFYNDSKATN 314


>gi|333029695|ref|ZP_08457756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
 gi|332740292|gb|EGJ70774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
          Length = 436

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 166/388 (42%), Gaps = 56/388 (14%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++DSR+   G +F+A+ G   DG+L+  +A+  GA  ++V +          I  +  
Sbjct: 16  QITTDSRNCPKGSLFIALKGENFDGNLYASKALENGAAFVIVDNP------EVVIEGDDR 69

Query: 92  ILVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            ++V ++   L   A+  R   K P  I+A+TGT+GK++    +  +  +   + +  G 
Sbjct: 70  YILVHDSLHALQQMANYHRQMLKTP--IIAITGTNGKTTTKELIANVLLKKYKTHYTQGN 127

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +N +  P  I     LS  +S  +  + + A+  G  +     +    G  
Sbjct: 128 L--------NNHIGVPLTI-----LSMTASDEMAVIEMGANHPGEIKDLTRIVLPDYGLI 174

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVL 268
           TN+G+ H++   + +     K  L++ L  K++  A I  DD+    +MK+A      ++
Sbjct: 175 TNVGKAHLEGFGSLEGVIRTKSELYDYLKEKKNGTAFINFDDSI---LMKQAEGIS-HLI 230

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------------LPGEFQVYNAL 316
           + G          VC   +   +T+S+E     +  P            L G++ + N L
Sbjct: 231 TYGTSES----TSVCGKIDDSSLTLSLE-----WYKPTLSNNIQRINTQLIGDYNLSNIL 281

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LK 374
            A  + +   +    + E LE+      R +F  T S   ++ +D A+ +N   M+  L 
Sbjct: 282 AAITIGVFFKVPIEDIKEALEQYTPQNNRSQFKKTESN--QLIID-AYNANPTSMLAALN 338

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           N   + +   +V+   G  R+ GK  ++
Sbjct: 339 NFCNLKAEHKMVIL--GDMRELGKDSLL 364


>gi|260589032|ref|ZP_05854945.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
 gi|260540811|gb|EEX21380.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
          Length = 474

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 115/328 (35%), Gaps = 58/328 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGT 123
           G  A  ++    L  ++A I  + P       +    +  + L G+  +N    +AV GT
Sbjct: 75  GQRASNITDDIDLVVYTAAIHEDNPEFACAKEKGIPMITRAELLGQIMKNYRLPIAVAGT 134

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSS- 179
            GK++  S +  +     L   +  PT ++         N     S  ++ +A  Y +S 
Sbjct: 135 HGKTTTTSMISHV-----LLEAEADPTISVGGILPAIHGNIRVGNSETFITEACEYTNSF 189

Query: 180 -QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 +S+                       N+  DH+D+ +          RLF E L
Sbjct: 190 LSFFPKISI---------------------ILNIDADHLDFFKDLDD-IRHSFRLFAEKL 227

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVC-----AIHN 287
           P +   II  D    +E+  +     C V++ G      Y    I   +        +H 
Sbjct: 228 PADGTLIINGDIPNVEEITDKL---PCEVITYGLEKAADYTAANITFDETAHASFDCLHK 284

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q +     G+   F   +PG   V NAL A  L   +G D   V   +        RF+
Sbjct: 285 GQCI-----GR---FSLAVPGLHNVSNALSAIALGEKVGFDLDTVRRGILHFGGTDRRFQ 336

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + G  + G  I  DYAH    +   LK 
Sbjct: 337 YKGKVA-GVTIIDDYAHHPTEIAATLKT 363


>gi|171913439|ref|ZP_02928909.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 477

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 12/182 (6%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH +YHQ   +  N   R     LP     +   +   S++V   A  A C   
Sbjct: 203 LTNVYPDHPEYHQGDGSSLN-HFRTLMCQLPANGLLLTGDNGPLSRQV---AEMAPCMRQ 258

Query: 269 SVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            VG++           IH  N+++  I     +  F  P+ G     NA +AA      G
Sbjct: 259 RVGFEES-----ADIRIHDWNQEEDGIQFTLGNTKFFLPVTGRHNALNAAMAAVAAEHHG 313

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +  A    HL     V GR + VG++ RG  +Y D A+   SL ++ +N R     R +V
Sbjct: 314 VPLAHSAAHLSAFQGVQGRQDLVGSH-RGIDLYRDLAYLPESLLLVQENFRLRFPDRRLV 372

Query: 387 VF 388
           + 
Sbjct: 373 LL 374


>gi|170764283|ref|ZP_02640360.2| Mur ligase family protein [Clostridium perfringens CPE str. F4969]
 gi|170713818|gb|EDT26000.1| Mur ligase family protein [Clostridium perfringens CPE str. F4969]
          Length = 560

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 148/371 (39%), Gaps = 32/371 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK+S +  + +  +  G  S  +  T  I    +  +    +  Y AK +  
Sbjct: 165 IVSITGTNGKTSTSRLIYKGFENLGYFS-GLAMTGGIIINNEFVKKGDTTGFYSAKKV-- 221

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234
           L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+   
Sbjct: 222 LTNPQVEVGVLETARGGILKKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITT 281

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGC----------RVLSVGYQGKFIHLKKVCA 284
            E+LP E   II A+     EV++   N             + +  G +  F+  + V  
Sbjct: 282 REVLP-EGKVIIKAEPKLY-EVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIF 339

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +     
Sbjct: 340 FDGKDKNIIS-NIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIEC--D 396

Query: 345 RFEFVGTNS----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +  +G  +       +I +DY H   + E +      I   +II +    GDR      
Sbjct: 397 VYNNIGRQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIK 456

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTA 452
            +G+IA + +D  I+ +  + R  +  +I   I  GI     K   +       EAI+ A
Sbjct: 457 ELGRIAGENSDTIIIKETFDRRGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIKKA 516

Query: 453 IEMLNKQDVLV 463
           I M  + D++V
Sbjct: 517 ISMAKEGDIIV 527


>gi|330720684|gb|EGG98925.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC2047]
          Length = 482

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 105/290 (36%), Gaps = 56/290 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  S +  +    GL  +F IG    ++S   + +L   S I +A+A   
Sbjct: 121 IAVAGTHGKTTTTSLLASLLAEGGLDPTFVIG--GLLNSAGTNAKLGA-SRILVAEADES 177

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +T +                        TN+  DH+  +    +       
Sbjct: 178 DASFLHLQPMTAI-----------------------VTNIDADHMSTYGGDFSKLTDTFI 214

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSVGYQG-KFIHLKK 281
            F   LP     +   DD   K V+            A  A  R + +   G +     K
Sbjct: 215 SFLHNLPFYGLVVACIDDDNVKAVLPDVSRPVITYGVAEEADYRAVDIKQTGLRMTFTAK 274

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               H   QVT+++           PG   V NA+ A  +    G+    +   L+K   
Sbjct: 275 RPNDHQDLQVTLNI-----------PGHHNVLNAMAAIAVATDEGVSDEAICAALQKFEG 323

Query: 342 VPGRFEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVF 388
           V  RF+  G   +  G + +  DY H    ++  L  +R+    R +V+ 
Sbjct: 324 VGRRFQICGEFETVNGSVLMVDDYGHHPREVKATLDTVRSSWPDRRLVML 373


>gi|221632096|ref|YP_002521317.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
 gi|221157253|gb|ACM06380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
          Length = 469

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 20/178 (11%)

Query: 180 QGVTHVSVEASS---HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           Q  T V +E SS    GLD+H   G+       T++  DH+D + + +AY +AK  +   
Sbjct: 163 QPDTPVVLELSSWQLEGLDEH---GLSPHIAVLTSISPDHLDRYPSFEAYIDAKRAIARH 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             P +   ++  DD     V     +AGC +V+  G            A     ++    
Sbjct: 220 QRPGDW-FVVNRDDP----VAWACRDAGCGKVVPFGRDDGVSD----GAFWRDDRLIWRW 270

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            G++ D L    FPL GE  V NAL AA   +  G   A V   L +   VP R E V
Sbjct: 271 GGEEQDLLRRSDFPLMGEHAVGNALAAAAAALLRGASPAHVAAALREAEPVPHRLEHV 328


>gi|212702358|ref|ZP_03310486.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
 gi|212674236|gb|EEB34719.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
          Length = 457

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 14/183 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ T+QA  +A ++ F   +P     ++  DD   + ++ R       VL+
Sbjct: 179 TNVDEDHLDHYGTRQAIDDAFVQ-FMNKVPFYGLNVVCGDDPGVRALLPRVKRP---VLT 234

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G+        ++ A+  +  +T   E      K  +   P PG   + NAL A G   A
Sbjct: 235 YGFAAD----NQLRAVLLESGMTSRFEVWRDDQKLGEVTLPHPGRHNILNALAAIGAATA 290

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             I     +E L     V  RFEF G  + G  +  DY H    +   L   R +   R 
Sbjct: 291 ADIPFERCVEGLATFRGVGRRFEFKGERN-GVTVIDDYGHHPAEIAATLATARQVFPNRR 349

Query: 385 IVV 387
           +VV
Sbjct: 350 LVV 352


>gi|294787089|ref|ZP_06752343.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315226742|ref|ZP_07868530.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
 gi|294485922|gb|EFG33556.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315120874|gb|EFT84006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
          Length = 525

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 24/131 (18%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++   +DSR ++ G +FVAI G + DGH ++ QA A GA A VV    +         +
Sbjct: 32  QVDSAVTDSRQVRPGSLFVAIKGERVDGHAYLEQAAAAGAVAAVVDHEVA--------GA 83

Query: 89  NTPILVVDNTRKFLSLFASR-------LYG--KHPENILAVTGTSGKSSVASFVQQICQR 139
           + P ++V++T + L   A         L G  + P  I+ +TG+ GK++    ++ +   
Sbjct: 84  SLPQILVEDTVRALGFLARHNIEKRRSLAGQARTPFTIVGITGSVGKTTTKDLIRALLS- 142

Query: 140 SGLSSFQIGPT 150
                  +GPT
Sbjct: 143 ------PLGPT 147


>gi|229147027|ref|ZP_04275387.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST24]
 gi|228636415|gb|EEK92885.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST24]
          Length = 433

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K +        +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+   +K+ +          E  N  EAI T +EM+
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE--NWKEAIDTKVEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 AENDVFIITG 417


>gi|120600140|ref|YP_964714.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
 gi|120560233|gb|ABM26160.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
          Length = 464

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 51/293 (17%)

Query: 114 PEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT---PSPIY 169
           PE  +LAV+GT GK+S +S +  I +  G       P   I    Q+  ++     S  +
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQ-----PGFLIGGVPQNFGVSACLGESAFF 158

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ---TQQAY 226
           + +A  Y S+        +  S  +  H    +        NL  DH D        Q  
Sbjct: 159 VVEADEYDSA------FFDKRSKFVHYHPRTLV------INNLEFDHADIFADLAAIQKQ 206

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------VGYQGKFI 277
           FN  +R     +P E   II+  DA S   +K+  + GC              G+ GK +
Sbjct: 207 FNHLIRT----VPGEG-KIIWPVDAQS---VKQTIDMGCWSKQEHYHTAESITGWYGKAL 258

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                C         +  +G+    L + L G+  + NA++A      +G+  +  +E L
Sbjct: 259 SDDCHC-------FEVFFDGESQGVLEWDLIGQHNIENAIMAIAAARHVGVKPSAAIEAL 311

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +      R E +GT   G  +Y D+AH   ++   LK +R  +   +IIVV 
Sbjct: 312 AQFIPPKRRLELLGT-VNGISVYDDFAHHPTAIATTLKGMRAKVGQSKIIVVL 363


>gi|302382172|ref|YP_003817995.1| Mur ligase middle domain protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192800|gb|ADL00372.1| Mur ligase middle domain protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 469

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL A G   A+G+     +  LE    +  R E VG  + G  +  D+AH 
Sbjct: 282 VPGAHNVANALAALGAVRALGVPLDQAVASLETFAGIRRRMEVVGA-ANGVTVIDDFAHN 340

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
            + +   +K +     GR++++F
Sbjct: 341 PDKIAATVKTLHAF-DGRLLILF 362


>gi|256421380|ref|YP_003122033.1| Mur ligase middle domain protein [Chitinophaga pinensis DSM 2588]
 gi|256036288|gb|ACU59832.1| Mur ligase middle domain protein [Chitinophaga pinensis DSM 2588]
          Length = 450

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 100/263 (38%), Gaps = 28/263 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +N + V G+ GK++  + +  + Q+SG  +F     + ++ F Q   +T  +P+ + +  
Sbjct: 104 KNRVVVGGSHGKTTTTAMIMHVLQQSG-QAFDYLVGARLAGFPQSVNITD-APVIVCEGD 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y +S     +      H L  H            T +  DHI+   T + Y   +  +F
Sbjct: 162 EYPASV----IEKRPKFHFLHPH--------IAVLTGIAWDHINVFPTFENYLE-QFAIF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              + K    +IY +     E++K     G  +  V Y             H       +
Sbjct: 209 LRTM-KAGHTLIYNNT--DPELVKLVKAEGLHLKLVPYD---------IPQHQINNGVTT 256

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V   D      + G+  + N   A  +C  +GI   + L+ +        R E VG N  
Sbjct: 257 VHFGDQQTELEVFGDHNLLNMHAARLVCNELGISDEVFLKAIATFKGAAKRLELVGKNEH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIR 377
              IY D+AH  + ++  +  +R
Sbjct: 317 CA-IYRDFAHAPSKVKATISALR 338


>gi|303235636|ref|ZP_07322243.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
 gi|302484083|gb|EFL47071.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
          Length = 453

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 120/297 (40%), Gaps = 53/297 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I           P   Y+      
Sbjct: 114 MVCITGSNGKTTTTSLIYHIFKNAG---YDVGLAGNIGKSLALQIAEEPHEYYV------ 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D +  Q + Y +AKMR+ +
Sbjct: 165 ----------IELSSFQLDN--MYDFRANIAILLNITPDHLDRYDFQFEKYADAKMRIIQ 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--------SVGYQGKFIHLKKVCAIHN 287
               KE   I + DD   K+ +++      +          S+GY  +  ++ +     N
Sbjct: 213 N-QTKEDSFIYWNDDPVIKKELEKFDVKAVQYPFSELKEKGSIGYIEEGQYILETPTPFN 271

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRF 346
            +Q  +S+ GK             +YN+L AAGL   I GI    + + L     V  R 
Sbjct: 272 MEQEDLSLTGK-----------HNIYNSL-AAGLASNISGITKENIRKSLSDFPGVEHRL 319

Query: 347 EFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           E V      G  Y++ +  +N  +    L+++RT T    I++ G G D+     PI
Sbjct: 320 EKVC--KVAGVQYINDSKATNVDACWYALESMRTPT----ILIIG-GKDKGNDYTPI 369


>gi|15836434|ref|NP_300958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae J138]
 gi|8979275|dbj|BAA99109.1| muramoylalanine-glutamate ligase [Chlamydophila pneumoniae J138]
          Length = 417

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 187 VEASSHGLDQHRLDGIKLIAGS-FTNLGRDHIDYHQTQQAYFNAKMRL 233
           VE SS  L     + +  ++GS F N  R+H+DYH+   AYF+AK+R+
Sbjct: 152 VEISSFQLATQE-EHVPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRI 198


>gi|330904826|gb|EGH35398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 47

 Score = 38.5 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 23/38 (60%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R TTP PI +   L+ L   G   V++E SSHGLDQ R
Sbjct: 1   RHTTPDPIAVQATLTDLRQAGARAVAMEVSSHGLDQGR 38


>gi|19920852|ref|NP_609075.1| CG11236 [Drosophila melanogaster]
 gi|7297177|gb|AAF52443.1| CG11236 [Drosophila melanogaster]
 gi|19528251|gb|AAL90240.1| GH12548p [Drosophila melanogaster]
 gi|220944122|gb|ACL84604.1| CG11236-PA [synthetic construct]
 gi|220954032|gb|ACL89559.1| CG11236-PA [synthetic construct]
          Length = 341

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            ++A WIF A++   +DG+  IP       E++V+   +  +D++  +  N   ++VD  
Sbjct: 215 RVRANWIFSAVLDESDDGNYIIPN-----TESVVLGGTHQERDYNTKVCQNDRRMIVDGC 269

Query: 99  RKFL 102
           ++++
Sbjct: 270 QRYI 273


>gi|322377008|ref|ZP_08051501.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M334]
 gi|321282815|gb|EFX59822.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M334]
          Length = 444

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + IY +DA  +++M    +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFIYGEDAELRKIMS---DAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|312196218|ref|YP_004016279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
 gi|311227554|gb|ADP80409.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
          Length = 493

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 60/296 (20%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +FVA+ G + DGH F   A+A GA A++ +   S+           P ++V
Sbjct: 33  DSRLVEPGALFVALPGARVDGHDFAAGAVAAGARAVLAARPVSV-----------PAVLV 81

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STIS 154
            +    L   A+ +       +LA+TG+SGK++    +  +          +GPT +   
Sbjct: 82  ADPAGALMALAAHVRTLTKATVLAITGSSGKTTTKDLLADLLG-------SLGPTLAPPG 134

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHRLDGIKLIA----GSF 209
           SF  +N +  P        L+ L  +  T +V++E  + G+    +  +  +A    G  
Sbjct: 135 SF--NNEIGLP--------LTLLRLEPDTEYVALEMGARGIGH--IAALCQVARPQVGVV 182

Query: 210 TNLGRDHI-DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            N+G  H+ +Y   +     AK  L E         ++ ADD     +  RA  AG RV+
Sbjct: 183 INVGSAHVGEYADGRAGIAQAKGELAEA---ATDVVVLNADDPLVAAMRPRA--AGRRVV 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL---------FPLPGEFQVYN 314
           + G            A    +++ +   G+  FD +           L GE QV N
Sbjct: 238 TFGVAAD--------ADVRAERIALDAAGRASFDLVTDAERHRVALALVGEHQVGN 285


>gi|240948408|ref|ZP_04752786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor NM305]
 gi|240297234|gb|EER47792.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor NM305]
          Length = 434

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 28/152 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG +GKS+V +   ++ +++G+   ++G    I                   ALS 
Sbjct: 108 IIAITGANGKSTVTTLTTEMAKQAGI---KVGMGGNIG----------------VPALSL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L S    +V +E SS  L+      +K  A +  N+  DH+D Y+ + + Y  AK+R+++
Sbjct: 149 LKSDYELYV-LELSSFQLETTY--SLKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQ 205

Query: 236 E----LLPKESPAIIYADDAYSKEVMKRAHNA 263
                ++  E P + Y   A  K +     NA
Sbjct: 206 NAENIIVNGEDP-LTYPTQAVEKLIRFAEQNA 236


>gi|114570630|ref|YP_757310.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Maricaulis
           maris MCS10]
 gi|114341092|gb|ABI66372.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maricaulis maris
           MCS10]
          Length = 474

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 102 LSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           + LFA  L     K    ++ +TGT+GKS+  + +  I + +G  +  +G     +  AQ
Sbjct: 100 IELFAQALADLPEKRRPKVIGITGTNGKSTTTALIGHILRATG-RNVVVGGNIGDAILAQ 158

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHI 217
               + P P               ++  +E SS+ LD  H L           N+  DHI
Sbjct: 159 ----SPPRP--------------GSYYVLELSSYQLDLTHTL---ACDVAVLLNVTPDHI 197

Query: 218 DYHQTQQAYFNAKMRLFEELLP 239
           D H     YF AK RLFE   P
Sbjct: 198 DRHGDFDGYFRAKKRLFEMQKP 219


>gi|313637657|gb|EFS03043.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria seeligeri FSL
           S4-171]
          Length = 350

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 103/277 (37%), Gaps = 46/277 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +          I PTS                 YL    +  
Sbjct: 7   IAITGSHGKTSTTGLLSHVVG-------AIRPTS-----------------YLIGDGTGS 42

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G  + ++EA  +   Q      K      TN+  DH DY ++    FNA    FE L
Sbjct: 43  GTKGAEYFALEACEY---QRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 95

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+     A   +V  R       ++  G+ G+    +    I         V  
Sbjct: 96  GKQVKKAVF----ALGDDVELRKLTLDIPIIYFGF-GEENEFQAKNVIKETTGTRFDVYH 150

Query: 298 KDFDFL--FPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +D +FL  F +P  G+  V NAL    LC   G+    V   L+    V  RF       
Sbjct: 151 RD-EFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVKRRFSIT---D 206

Query: 354 RGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
           +G ++ V DYAH  + +   +   R      +I+ VF
Sbjct: 207 KGNQVLVDDYAHHPSEIRATVNAARQKYPDKKIVAVF 243


>gi|239787357|emb|CAX83834.1| UDP-N-acetylmuramate--alanine ligase [uncultured bacterium]
          Length = 450

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 32/193 (16%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  +H+++ +TQ++   A  + F E        +   DD  +  V+K+          
Sbjct: 175 TNIDLEHMEFFKTQESLEKA-FQTFIENTSILGCTLACIDDPLAAVVIKKTPHHTIITYG 233

Query: 260 -AHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNA 315
            + N+  R+  L  G  G +  +K                 K++  LF P+ G+  V N+
Sbjct: 234 ESENSDIRLTALDKGITGSYFSVK--------------TRRKEYKNLFLPMMGKHNVLNS 279

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILK 374
           L   G    + +D   + E L+    V  RF   GT +    ++V DYAH    +E ++K
Sbjct: 280 LAIVGAGEFLDLDEDTIRETLKNFQGVQRRFTIRGTVNSA--VFVDDYAHHPREIETVIK 337

Query: 375 NIRTITSGRIIVV 387
           + +   + +I+ +
Sbjct: 338 SAKQYGATKIVAI 350


>gi|78188037|ref|YP_378375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
 gi|122063240|sp|Q3ANV5|MURD_CHLCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78170236|gb|ABB27332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
          Length = 464

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 52/258 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQ----RSGLSSFQIG----PTSTISSFAQDNRLTTPSPI 168
           ++ +TGT GK++ ++ +  +C+    R G  S+ +G    P S++    Q N +      
Sbjct: 107 MVGITGTDGKTTTSTLIHTLCEADGKRHGYRSYSVGNSGIPFSSMVLAMQPNDVAV---- 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYF 227
                             +E SS+ L+  R           TN+  DH+D Y Q  Q Y 
Sbjct: 163 ------------------IELSSYQLE--RSISFHPQVSLITNITPDHLDRYGQNMQRYA 202

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-----CRVLSVGYQG-KFIHLKK 281
            AK R+F  +  +     IY  D     +++ A  A      CR ++ G +    + L K
Sbjct: 203 EAKYRIF--MNQQAGDTFIYNQD---DSMLQAAFGASQIAVPCRSVAFGLEPLTNVQLDK 257

Query: 282 VCAIHNKQQVTI--------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              + N   V +         +   D        G+  + N L A  +  A+GI S ++ 
Sbjct: 258 RRVLVNGNMVVVRQNDGALQPIVAVDEVLNRAFRGKHNLSNVLAAVAVGEALGIGSEVMR 317

Query: 334 EHLEKLHVVPGRFEFVGT 351
           + L     V  R E V T
Sbjct: 318 QALTAFGGVEHRQELVAT 335


>gi|38234177|ref|NP_939944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200439|emb|CAE50127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium diphtheriae]
          Length = 496

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 44/240 (18%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQA---------------IAQG-AEAIVVSSAYSL 79
           DSR +  G +FVA+ G + DGH F+P A               I  G A AIVV  A   
Sbjct: 34  DSRKVSEGSLFVALAGARVDGHDFVPAALESGAAAALVAHPVKIDSGLAPAIVVPPATGQ 93

Query: 80  QDFSATIRS-NTPILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQ 135
           Q  + +  + +     V    + + L A R+          ++ VTG++GK+S    +  
Sbjct: 94  QQSANSYATEHDEDGSVAAVLQGMGLIARRVIDTLTAQGLTVMGVTGSAGKTSTKDMLAS 153

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEAS 190
           I       S Q    +   SF  +N +  P + +   +   YL    S++G+ H++    
Sbjct: 154 IL------SNQAPTVAPPGSF--NNEIGHPYTALRCTEQTRYLVAEMSARGIGHIA---- 201

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H         G   N+G  H+    +++    AK  L E  LP +  A++ ADD
Sbjct: 202 ------HLAQIAPPKIGVVLNVGTAHLGEFGSREVIAQAKGELVEA-LPHDGVAVLNADD 254


>gi|302383887|ref|YP_003819710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194515|gb|ADL02087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 474

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 141/345 (40%), Gaps = 29/345 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N ++ +SR I+ G +F+A+ G + DGH F   A A GA   +V                 
Sbjct: 30  NGLTYNSREIEPGDLFLALKGAR-DGHDFAASAFAAGAAGALVERPVD----------GG 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P +VV +T   L    +    + P     AVTG+ GK+SV   ++     +G +      
Sbjct: 79  PCIVVPDTLHALEALGAAARDRAPHIRRGAVTGSVGKTSVTQAIKAGLDLAGPAH----- 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++I S+  +N +  P  + LA+ +     + V  + + A        R+  ++  A   
Sbjct: 134 -ASIKSY--NNHIGVP--LTLAR-MHPSVERAVFEIGMNAPGEIGPLARM--VQPHAACV 185

Query: 210 TNLGRDHIDYHQTQQAYFNA-KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           T +G  HI+     +A   A K  +F+ L P    A+I  D+ + + + + A  AG RV 
Sbjct: 186 TTVGPVHIEAFADGEAGVAAEKAAIFQGLGPGGL-AVINGDNPWVELLHQAALRAGARVA 244

Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G +      L          +VT  V G+   F     G     N+L    +  A+ +
Sbjct: 245 TFGSEPAHDARLIDFTPNPEGARVTAEVYGRTHVFPLRQSGFHWGLNSLAVILMLDALDV 304

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEM 371
                LE L     + GR E    +  +G    +D ++ +N L M
Sbjct: 305 PVETALEALAHFEPLKGRGETRLVHLPKGAFTLIDESYNANPLSM 349


>gi|27904698|ref|NP_777824.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29427599|sp|P59418|MURC_BUCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27904095|gb|AAO26929.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 486

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 104/271 (38%), Gaps = 61/271 (22%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +A++GT GK+S  + +  I + S LS   I  G   +I+S    N     +P Y      
Sbjct: 122 IAISGTHGKTSTTAIIFSIFEDSNLSPTLINGGYLKSINS----NIKIGKNPFYCI---- 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL-- 233
                      VEA         L  I +I    TN+ +DHI+ +    ++ N K+    
Sbjct: 174 -----------VEADESDASFLHLKPITII---LTNIEKDHIETYN--GSFHNLKLAFIK 217

Query: 234 FEELLPKESPAIIYADDAYSKEVM---KR-------AHNAGCRVLSVGYQGKFIHLKKVC 283
           F   LP    AI+  D+   + ++   KR       + NA  R+     Q KF       
Sbjct: 218 FIHNLPFYGTAIMCIDNHAVQTILPYIKRNIITYGFSSNADVRI-DRYVQKKF------- 269

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHV 341
                + + I V     +    LPG     NA   A +C+A    ID   +++ L+    
Sbjct: 270 ---TSRFIVIRVNKPTLNVTLNLPGRHNALNA--TAAICVATQENIDDKNIIQSLKNFQG 324

Query: 342 VPGRFEFVGT---NSRGGR-----IYVDYAH 364
           V  RFE   T   NS+  R     +  DY H
Sbjct: 325 VQRRFELSKTFTINSKSHRKKEIMLINDYGH 355


>gi|296504948|ref|YP_003666648.1| folylpolyglutamate synthase [Bacillus thuringiensis BMB171]
 gi|296326000|gb|ADH08928.1| folylpolyglutamate synthase [Bacillus thuringiensis BMB171]
          Length = 407

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 210 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 269

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K +        +IV+F   GD+  
Sbjct: 270 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQL 325

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+   +K+ +          E  N  EAI T +EM+
Sbjct: 326 --HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE--NWKEAIDTKVEMI 381

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 382 AENDVFIITG 391


>gi|228923210|ref|ZP_04086500.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836416|gb|EEM81767.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 433

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 27/203 (13%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDS 329
           K   A+H +     + +G+ FDF  P          + G  QV NA +A    + +    
Sbjct: 226 KHFTALHKQS----NEDGEQFDFTCPFSTFEDLQISMKGIHQVGNAALALMAVMYVKTYV 281

Query: 330 ALVLEHLE-----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGR 383
           + ++E  E     +L    GRFE + +N     I +D AH    +E ++K +        
Sbjct: 282 SFLIEEEEIRTGLQLAYWIGRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKN 338

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +IV+F   GD+      ++G++     +I   T    R+   +K+ +          E  
Sbjct: 339 VIVLFTALGDKQL--HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE-- 394

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           N  EAI T +EM+ + DV ++ G
Sbjct: 395 NWKEAIDTKVEMIAENDVFIITG 417


>gi|229830143|ref|ZP_04456212.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
 gi|229791441|gb|EEP27555.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
          Length = 458

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NAL    +   +G+    + E   K H    RF++ G    G  +  DYAH 
Sbjct: 280 VPGRHNIGNALSVLAVAHRMGLSEEEIREGFAKFHGADRRFQYKG-KFHGATVIDDYAHH 338

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
              +   L   +     RI+VVF
Sbjct: 339 PTEIRASLAAAKNYPHKRIVVVF 361


>gi|51892345|ref|YP_075036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856034|dbj|BAD40192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 521

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 37/229 (16%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR ++ G  FVA+ G + DGH F  QA A+GA  ++ +      D +      
Sbjct: 27  VSGIAWDSRLVRPGDCFVALAGERADGHDFAAQAAARGAACVLAARPVPAGDAA------ 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             ++V  +    L      L  +HP   ++ +TG+ GK++       +        F++ 
Sbjct: 81  --VVVCPDPLLGLGRLGLALRSRHPHLRVVGITGSVGKTTTKEMTAAVLA----ERFRV- 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
                  F  +  L   S + L  +L+ L+ +   H   EA+   +       I  +A  
Sbjct: 134 -------FRTEGNLN--SEVGLPASLAGLTDE---H---EAAVLEMGMRAPGEIAYLASI 178

Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                G  TN+G  H++   TQ+    AK  L    LP +  A++ ADD
Sbjct: 179 ARPQVGVVTNVGITHLELLGTQENIALAKSELVRA-LPPDGVAVLNADD 226


>gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B]
 gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B]
          Length = 821

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 29/231 (12%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +DSR +      +F A+     DGH +I +         VVS    L +F +   +N   
Sbjct: 29  TDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRVRNFVVSDM--LPEFESMKDAN--F 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +T + L   A+    +    ++ +TG++GK+ V  F+ Q+      + F I     
Sbjct: 85  LIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLH----NEFNI----V 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
            S  + +++L  P  ++    +S  ++ G+    +   S   +  RL   I    G  TN
Sbjct: 137 RSPRSYNSQLGVPLSVW---QMSEKNTLGIFEAGI---SQPDEMERLQPIIAPTIGIITN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRA 260
           +G  H      Q+ + ++  +  E+L L  +  AIIY  DD +    ++ A
Sbjct: 191 IGEAH------QENFLSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESA 235


>gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13]
 gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13]
          Length = 821

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 29/242 (11%)

Query: 24  QWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           Q  +  ++ + +DSR +      +F A+     DGH +I +         VVS    L +
Sbjct: 18  QLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRVRNFVVSDM--LPE 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           F +   +N   L+V +T + L   A+    +    ++ +TG++GK+ V  F+ Q+     
Sbjct: 76  FESMKDAN--FLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLH--- 130

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            + F I      S  + +++L  P  ++    +S  ++ G+    +   S   +  RL  
Sbjct: 131 -NEFNI----VRSPRSYNSQLGVPLSVW---QMSEKNTLGIFEAGI---SQPDEMERLQP 179

Query: 202 -IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMK 258
            I    G  TN+G  H      Q+ + ++  +  E+L L  +  AIIY  DD +    ++
Sbjct: 180 IIAPTIGIITNIGEAH------QENFLSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIE 233

Query: 259 RA 260
            A
Sbjct: 234 SA 235


>gi|194290727|ref|YP_002006634.1| udp-N-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
 gi|193224562|emb|CAQ70573.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
          Length = 462

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 292 TISVEGKD-FDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           T +  GKD FD  F           L G     NAL A G    +G+ +A  +E L +  
Sbjct: 254 TPAAPGKDAFDVWFGDAVAGTVVWDLQGTHNRMNALAAIGAARHVGVPAAQAIESLSRFA 313

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388
            V  R E  G  + G  +Y D+AH   +++  L  + R + + RI+ V 
Sbjct: 314 NVKRRMEVRGV-AGGVTVYDDFAHHPTAIQTTLDGLRRRVGNARILAVL 361


>gi|148238364|ref|YP_001223751.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. WH 7803]
 gi|189082507|sp|A5GHN9|MURC_SYNPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147846903|emb|CAK22454.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. WH 7803]
          Length = 486

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 23/185 (12%)

Query: 207 GSFTNLGRDHIDYHQ-------TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           G  TNL  DH D+++       T Q + +   RL      ++ P +     A +   ++R
Sbjct: 189 GVITNLELDHTDHYRDLDDLIATLQRFGDGCKRLLAN---QDDPILSEHFQADAWWSVQR 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + N     L V  +G     + +  ++ +      +         P+PG   + N + A 
Sbjct: 246 SDNVDFAGLPVALEGD----RTIADLYEQGTFVGQIT-------LPMPGLHNLSNTIGAL 294

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-T 378
             C   G+    ++ HL +L     RF++ G + +G +I  DYAH  + +   L      
Sbjct: 295 AACRMEGVPLEHLISHLSELKTPGRRFDYRG-DWQGRQIVDDYAHHPSEVAATLNMANLM 353

Query: 379 ITSGR 383
           ++SGR
Sbjct: 354 VSSGR 358


>gi|326388916|ref|ZP_08210498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206516|gb|EGD57351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 452

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 21/140 (15%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA+      P  ++ +TGT+GKS+  + V  IC+ +G  +   G             
Sbjct: 96  IELFAAIRPELPPHRVVGITGTNGKSTTTALVHHICREAGFPARMGGNIGL--------- 146

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                P+   +AL      G  +V +E SS+ +D      ++    +  N+  DH+D + 
Sbjct: 147 -----PVLGEEAL----PAGGVYV-LELSSYQIDLTY--SLEADVAALINISPDHLDRYD 194

Query: 222 TQQAYFNAKMRLFEELLPKE 241
               Y  +K RLF    P +
Sbjct: 195 GFAGYAASKARLFAMQRPDQ 214


>gi|169827009|ref|YP_001697167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
 gi|168991497|gb|ACA39037.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
          Length = 276

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL   H+DYH T   Y  AK  +       ES   IY  D     V+  A  +  + +
Sbjct: 13  LTNLYDAHLDYHGTFDNYAEAKFGVTRN--QDESDYFIYNAD--QPIVVGYAAKSNAQKI 68

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG 326
                G+ +H             TI  +G  +       LPG+  + N L A   CI +G
Sbjct: 69  PFSSNGRTVHGISA------DDTTIYWQGDPYMDRANIALPGKHNLENILAAVAACILVG 122

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            D   + E L     V  R +FV     G +IY D   T+
Sbjct: 123 CDKGKMEEVLATFGGVRHRTQFV-REWNGRKIYNDSKATN 161


>gi|78778407|ref|YP_396519.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
 gi|78711906|gb|ABB49083.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 469

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 22/182 (12%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYA 363
           P+PG   + N   A      IG+D   + ++++ L +   RFEF G  + R   +Y DYA
Sbjct: 278 PIPGLHNLSNITAAIAASRMIGVDFLEIKKNIKYLKLPKKRFEFRGQVDERN--LYDDYA 335

Query: 364 HTSNSLEMILKNIRTIT---------SGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
           H  N ++  +K  R            +GR+I +F     R    +    + AL+L  ADI
Sbjct: 336 HHPNEIKATIKLGRLFINHKRNNESHNGRLIAIF--QPHRYSRVKQFAKEFALELSKADI 393

Query: 413 AIVTDDNPRSE-DPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAG 466
             +T      E + + I + II  +     K      N  E  +   E+  K D+++  G
Sbjct: 394 IYITSIYAAGEGNEDNINSTIITDLIYKQNKNVSYINNYHEITKKFYELTQKGDLILNMG 453

Query: 467 KG 468
            G
Sbjct: 454 AG 455


>gi|16759121|ref|NP_454738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29140671|ref|NP_804013.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213052851|ref|ZP_03345729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213417202|ref|ZP_03350346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213426157|ref|ZP_03358907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646588|ref|ZP_03376641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213859656|ref|ZP_03385360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289823736|ref|ZP_06543348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|30316091|sp|Q8Z9H0|MURD_SALTI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293608|pir||AC0518 UDP-N-acetylmuramoyl-L-alanine,D-glutamate ligase [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501411|emb|CAD01283.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136295|gb|AAO67862.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 438

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDADRELYV-LELSSFQLET--TSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K    ++ ADDA +  V      A  R +S G      HL       N+QQ    +
Sbjct: 205 ----KAKVCVVNADDALTMPV----RGADERCVSFGVNMGDYHL-------NRQQGETWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             K    L      L G+    NAL A  L  A+G+  A  L+ L     +  RF+ 
Sbjct: 250 RVKGEKVLNVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQL 306


>gi|330752175|emb|CBL87134.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 165/419 (39%), Gaps = 43/419 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R+I  G +F A+ G   +G+ F  +A+ QGA   VV           T+  +  I
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE---------TMDQDIRI 63

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +  + L   A          +  +TG++GK++    +  +     LS+       T
Sbjct: 64  IQVSDVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAV-----LST----KYKT 114

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGS 208
            ++F   +N +  P        L+ LS    T +++    ++H L+   L  I +   G 
Sbjct: 115 HATFGNLNNHVGVP--------LTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGY 166

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN G+ H++     +     K  L++     ++  ++  DD+   E  K  +  G    
Sbjct: 167 ITNYGKAHMEGFGGLEGIIKGKSELYDFAFEHQTQVMVNFDDSLQSEKTKDHNRFGFGHS 226

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G   K     +  +I       +  +G        L G F   N   AA L +   + 
Sbjct: 227 KGGVTWKSTSDNEFASIQ------LETKGNSTSIKSQLSGHFNESNLAAAATLGLHFDVP 280

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI-RTITSGRIIV 386
              +   LE       R E+  T      + +D Y     S+ + ++N  +  TSG +I+
Sbjct: 281 LKDIKTALEAYVPSMNRVEWRKTQYNA--VLMDAYNANPTSMSLSIQNFGKWHTSGLMIL 338

Query: 387 --VFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             ++  G         I+ + I+LD+A   I+  ++    D E ++ +    +  F +K
Sbjct: 339 GDMYELGKASKVEHEAIVREVISLDMAQNCILIGEHFYDCDFEGLKFKTTKHLIDFWQK 397


>gi|264680245|ref|YP_003280155.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|299533117|ref|ZP_07046502.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
 gi|262210761|gb|ACY34859.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|298718894|gb|EFI59866.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
          Length = 477

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 18/167 (10%)

Query: 210 TNLGRDHI-----DYHQTQQAY--FNAKMRLF-EELLPKESPAIIYADDAYSKEVMKRAH 261
           TN+  DH+     D+ + +QA+  F  +M  +   +L  +SPA+       ++ V     
Sbjct: 179 TNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGRAILCVDSPAVREILPKLARPVTTYGF 238

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               +V +V  + +   ++      N Q         D + +  LPGE  V NAL A  +
Sbjct: 239 AEDAQVRAVNVRAEAGRMRFTVRRQNGQSY------PDLEVVLSLPGEHNVLNALSAVAV 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV--DYAH 364
            + + I    +L  LE    V  RF+  G    + GG   V  DY H
Sbjct: 293 AMELEISDEALLRALEGFKGVGRRFQRYGELPAANGGTFTVIDDYGH 339


>gi|226226835|ref|YP_002760941.1| UDP-N-acetylmuramate--L-alanine ligase [Gemmatimonas aurantiaca
           T-27]
 gi|226090026|dbj|BAH38471.1| UDP-N-acetylmuramate--L-alanine ligase [Gemmatimonas aurantiaca
           T-27]
          Length = 501

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D ++      +   R FE  + K    +  ADD  +   ++ A +      S 
Sbjct: 212 NVEADHLDIYRD----LDDITRTFEVYVSKAKTLVRCADDEGAMS-LRVASSREIIAYSA 266

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAG 320
              G     + V A      + +   G  F  +F           +PG   V NAL A G
Sbjct: 267 TVPGTLPAPRAVDARLLAADLVLDAAGSRFMVVFDGERLGEISLAVPGLHNVRNALAAIG 326

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A+G   A +   L     V  RF+ +G+ + G  +  DYAH    +   L   R   
Sbjct: 327 SGLALGCTVAQMAPGLAGFRGVQRRFQRLGSAA-GVEVVDDYAHHPTEVRATLAAARHAF 385

Query: 381 SGRIIVV 387
            GR IV+
Sbjct: 386 PGRRIVL 392


>gi|189462921|ref|ZP_03011706.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
 gi|189430348|gb|EDU99332.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
          Length = 444

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 111/276 (40%), Gaps = 48/276 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I +++GL+   +G    I                  ++L+Y
Sbjct: 105 MICITGSNGKTTTTSLIYHIFKKAGLN---VGLAGNI-----------------GQSLAY 144

Query: 177 -LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
            ++     +  +E SS  LD   +           N+  DH+D Y    Q Y +AK R+ 
Sbjct: 145 QVAECNYDYYVIELSSFQLDN--MYKFHANIAVLMNITPDHLDRYDYKMQNYVDAKFRII 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK----VCAIHNKQQ 290
           +     ++ A I+ +D     + K  H  G      G+   F   K+         NK  
Sbjct: 203 QN--QTDNDAFIFWND--DPVIQKELHKYGIH----GHYYPFAEKKEEGLAAFVEQNKVY 254

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFV 349
            T  +E         L G   ++N++ AAG+   I GI    + E L     V  R E V
Sbjct: 255 FTKPIEFNMEQEELALTGTHNLFNSM-AAGISANIAGIRKECIREALSDFKGVEHRLEKV 313

Query: 350 GTNSRGGRIYVDYAHTS-----NSLEMILKNIRTIT 380
            T  RG    VDY + S     NS    L +++T T
Sbjct: 314 -TRVRG----VDYINDSKATNVNSCWYALNSMKTKT 344


>gi|119469212|ref|ZP_01612196.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
 gi|119447464|gb|EAW28732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
          Length = 444

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 30/168 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           ++ I+VS   SL+  +     N+ + V+ +   F  +        + + ++AVTG++GKS
Sbjct: 72  SDMIIVSPGLSLKTPAIASAINSGVEVIGDVELFARI--------NTKPVVAVTGSNGKS 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V +    + + +G   F +     I +   D  L     +Y+                +
Sbjct: 124 TVVTLAYDVLKAAG---FNVALGGNIGTAVLD-LLNDDFDVYV----------------L 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           E SS  LD      +K ++ +  N+  DH+D + + QAY ++K+ ++ 
Sbjct: 164 ELSSFQLDTTT--SLKSVSATVLNVSEDHLDRYDSYQAYIDSKLSIYN 209


>gi|331083260|ref|ZP_08332373.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404341|gb|EGG83886.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 459

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 115/328 (35%), Gaps = 58/328 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGT 123
           G  A  ++    L  ++A I  + P       +    +  + L G+  +N    +AV GT
Sbjct: 60  GQRASNITDDIDLVVYTAAIHEDNPEFACAKEKGIPMITRAELLGQIMKNYRLPIAVAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSS- 179
            GK++  S +  +     L   +  PT ++         N     S  ++ +A  Y +S 
Sbjct: 120 HGKTTTTSMISHV-----LLEAEADPTISVGGILPAIHGNIRVGNSETFITEACEYTNSF 174

Query: 180 -QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 +S+                       N+  DH+D+ +          RLF E L
Sbjct: 175 LSFFPKISI---------------------ILNIDADHLDFFKDLDD-IRHSFRLFAEKL 212

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVC-----AIHN 287
           P +   II  D    +E+  +     C V++ G      Y    I   +        +H 
Sbjct: 213 PADGTLIINGDIPNVEEITDKL---PCEVITYGLEKAADYTAANITFDETAHASFDCLHK 269

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q +     G+   F   +PG   V NAL A  L   +G D   V   +        RF+
Sbjct: 270 GQCI-----GR---FSLAVPGLHNVSNALSAIALGEKVGFDLDTVRRGILHFGGTDRRFQ 321

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + G  + G  I  DYAH    +   LK 
Sbjct: 322 YKGKVA-GVTIIDDYAHHPTEIAATLKT 348


>gi|150009966|ref|YP_001304709.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Parabacteroides distasonis ATCC
           8503]
 gi|255012771|ref|ZP_05284897.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. 2_1_7]
 gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503]
          Length = 821

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 29/231 (12%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +DSR +      +F A+     DGH +I +         VVS    L +F +   +N   
Sbjct: 29  TDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRVRNFVVSDM--LPEFESMKDAN--F 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +T + L   A+    +    ++ +TG++GK+ V  F+ Q+      + F I     
Sbjct: 85  LIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLH----NEFNI----V 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
            S  + +++L  P  ++    +S  ++ G+    +   S   +  RL   I    G  TN
Sbjct: 137 RSPRSYNSQLGVPLSVW---QMSEKNTLGIFEAGI---SQPDEMERLQPIIAPTIGIITN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRA 260
           +G  H      Q+ + ++  +  E+L L  +  AIIY  DD +    ++ A
Sbjct: 191 IGEAH------QENFLSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESA 235


>gi|148545836|ref|YP_001265938.1| UDP-N-acetylmuramate [Pseudomonas putida F1]
 gi|148509894|gb|ABQ76754.1| UDP-N-acetylmuramate [Pseudomonas putida F1]
          Length = 449

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 107/274 (39%), Gaps = 46/274 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++ +S +  + + +G+S  F IG      +F+   RL   +P ++ +A  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIG--GVPQNFSVSARLGD-TPFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    I        NL  DH D      A    +     
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTAI------LNNLEFDHADIF-PDLASIERQFHHLV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +P E   I       +++ ++R    GC   V + G  G++            Q   +
Sbjct: 209 RTIPSEGLVI----HPTTEQALERVIGMGCWTPVQTTGEGGQW------------QARLL 252

Query: 294 SVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           S +G  F+ LF           L G+  V NAL        +G+  A+ ++ L     V 
Sbjct: 253 SPDGSRFEVLFEGEVQGVVDWALTGQHNVANALATLAAARHVGVVPAMGIDGLSAFKSVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            R E V    +G  IY D+AH   ++   L  +R
Sbjct: 313 RRMEKV-AEVQGVTIYDDFAHHPTAIATTLDGLR 345


>gi|146310298|ref|YP_001175372.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           sp. 638]
 gi|145317174|gb|ABP59321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter sp.
           638]
          Length = 438

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 44/232 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S  ++L   S +  ++  + +V +    + LF      + P  ++A+TG++GKS
Sbjct: 66  ADLIVASPGFALAHPSLSAAADAGVEIVGD----IELFCRE--AQAP--VIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++   +G    I                   AL  L      +V +
Sbjct: 118 TVTTLVGEMAKAAGIN---VGVGGNIG----------------LPALMLLDQDRELYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +  +A +  N+  DH+D Y    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLET--TSSLHAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYE----NAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ADDA +  V      A  R +S G      HL      H + +  + V+G+
Sbjct: 212 NADDALTMPV----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGE 254


>gi|15602008|ref|NP_245080.1| UDP-N-acetylmuramate--L-alanine ligase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431689|sp|P57818|MURC_PASMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12720360|gb|AAK02227.1| MurC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 482

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 129/345 (37%), Gaps = 71/345 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VVSSA    +          I V+   +    +   R +G      +AV GT GK
Sbjct: 83  GASVVVVSSAIRADNVEVVAAQERRIPVIQRAQMLAEIMRFR-HG------IAVAGTHGK 135

Query: 127 SSVASFVQQICQRSGLSSFQIGPT---STISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           ++  + +  I   +GL      PT     +   A  N     S   +A+A     S+L  
Sbjct: 136 TTTTAMISMIYAEAGLD-----PTFVNGGLVKSAGTNAHLGCSRYLIAEADESDASFLHL 190

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YH----QTQQAYFNAKMRLF 234
           Q +  V                        TN+  DH++ YH    + +  Y N     F
Sbjct: 191 QPMVSV-----------------------VTNIEPDHMETYHGSFEEMKHTYVN-----F 222

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---- 290
              LP    A++ ADD    E+  +    G +V++ G+  K  +      I + QQ    
Sbjct: 223 LHNLPFYGLAVLCADDDVLTELTPK---VGRQVITYGFSEKADY-----RIEDYQQTGFQ 274

Query: 291 ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                I+  G+  D L  +PG     NA  A  +    GI +  +L  L        RF+
Sbjct: 275 GHYTVITPSGERIDVLLNVPGRHNALNATAALVVAKEEGIGNEAILAALADFQGAGRRFD 334

Query: 348 FVGTNSR-GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +G   R  G++ +  DY H    + + ++  R    + RI ++F
Sbjct: 335 QLGQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIAMIF 379


>gi|110637753|ref|YP_677960.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280434|gb|ABG58620.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cytophaga hutchinsonii ATCC 33406]
          Length = 458

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 27/269 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G+ GK+++ + +  +  ++    F     + +  F    ++T  +PI + +   YL
Sbjct: 109 IVIAGSHGKTTITAMIMHVL-KTHKRKFDYLVGAKLDGFETMVQITDDAPIIIIEGDEYL 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S       ++ +   L  H    I LI+G    +  DHI+ + T + Y   +   F + 
Sbjct: 168 TS------PLDLTPKFLHYHH--HIGLISG----VAWDHINVYPTFEEYVK-QFDAFADS 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK    I    D  +  V   A      V ++GY            I N     ++ +G
Sbjct: 215 TPKGGILIYSESDDLATLV---ADKPRPDVQAIGYSAP------KHEIVNGITYLLTDKG 265

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K       + G+  + N   A  +C+ IGI  A+  + ++       R E +G   +   
Sbjct: 266 K---IELEVFGKHNLKNINAAKNVCLKIGITEAMFYDAIKTFKGAANRLEILG-RGKHNV 321

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ++ D+AH  + L+   K ++   S R ++
Sbjct: 322 VFKDFAHAPSKLKATSKAVKKQFSDRKLI 350


>gi|307824829|ref|ZP_07655052.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
 gi|307734187|gb|EFO05041.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
          Length = 479

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 26/134 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A++G++GKS+V + + ++ + +G+   ++G             L TP       AL  
Sbjct: 135 IVAISGSNGKSTVTTMLGEMAKATGM---KVG---------VGGNLGTP-------ALDL 175

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+  R   +  +A +  N+  DH+D H     Y   K R+F  
Sbjct: 176 LALNAQLYV-LELSSFQLE--RTSALNAVAATVLNVSADHLDRHVDMAEYAREKQRVFR- 231

Query: 237 LLPKESPAIIYADD 250
               +   +I ADD
Sbjct: 232 ---GDGVMVINADD 242


>gi|93007167|ref|YP_581604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychrobacter
           cryohalolentis K5]
 gi|118595677|sp|Q1Q883|MURD_PSYCK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|92394845|gb|ABE76120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychrobacter
           cryohalolentis K5]
          Length = 471

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 29/170 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A  I++S   SL + +        I VV + + F               I+A+TG++ 
Sbjct: 74  QQAARIIISPGISLDNVAIAAARAANIPVVSDIQLFCEACTVP--------IVAITGSNA 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + V Q+   +G++   +G    I                   ALS LS++ +   
Sbjct: 126 KSTVTTLVGQMAADAGIN---VGVGGNIG----------------VPALSLLSNKEMELA 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +E SS  L+     G ++   +  N+  DH+D H     Y  AK R+F+
Sbjct: 167 VIELSSFQLETVTNLGAQV--ATVLNMSPDHLDRHGDMLGYHQAKHRIFQ 214


>gi|253998170|ref|YP_003050233.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
 gi|253984849|gb|ACT49706.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
          Length = 460

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 46/259 (17%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA   +      ++A+TG +GK++V + V ++C+ +GL +   G             
Sbjct: 99  VELFAQ--FRPRSSKVIAITGANGKTTVTTLVGEMCKAAGLKTVVAGNIG---------- 146

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                 + +  AL  + + G   V V E SS  L+      +   A +  N+  DH+D +
Sbjct: 147 ------LPVLDALRQVETDGAPDVYVLELSSFQLET--TSSLAPDAAAVLNVTEDHMDRY 198

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--- 277
                Y  AK R+ +                   +V+ R  +A CR +++  Q       
Sbjct: 199 PGMPEYAAAKARILK---------------GAGVQVLNR-EDAWCRNMALPDQPMVTFGL 242

Query: 278 ------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                 H   + A+ ++  +              +PG     NAL A  LC AIG+D A 
Sbjct: 243 DLPVESHAYGLLALRDQLWLAQGAHPILHVEELRIPGLHNAANALAALALCRAIGVDWAP 302

Query: 332 VLEHLEKLHVVPGRFEFVG 350
           +   L +   +P R E+V 
Sbjct: 303 LQHVLREFKGLPHRVEWVA 321


>gi|254420158|ref|ZP_05033882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
 gi|196186335|gb|EDX81311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
          Length = 476

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 161/380 (42%), Gaps = 54/380 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I  ++ +SR I AG +F+A+ G + DGH F   A A GA A +V            +
Sbjct: 27  DRPITGLTYNSREIVAGDLFLALKGAR-DGHEFAANAFAAGAAAALVER---------PV 76

Query: 87  RSNTPILVVDNTRKFLSL-FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                ++V D      +L  A+R    H +   AVTG+ GK+SV   +     ++GL   
Sbjct: 77  EGGASVVVPDTLHGLEALGVAARERAPHVKRG-AVTGSVGKTSVTQAI-----KAGLD-- 128

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             GP  ++I S+  +N +    P+ LA+ +   + + V  + + A        R   +  
Sbjct: 129 LAGPAHASIKSY--NNHIGV--PLTLAR-MPVETRRAVFEIGMNAPGEIAPLSRF--VAP 181

Query: 205 IAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            A   T +G  HI+ +   +      K  +F+ L+P  + A+   D A+S  +   A   
Sbjct: 182 HAACVTTVGPVHIEAFADGEAGVAREKAAIFQGLVPGGT-AVANGDVAFSGVLCDAARAV 240

Query: 264 GCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALV 317
           G R++      G+  + +  +      + +   ++ E  G+  D+     G     N+  
Sbjct: 241 GARLVVFGTDPGHDARLLDFRP-----DAEGAAVAAELFGRRIDYRLAQSGAHWGLNS-- 293

Query: 318 AAGLCIAIGIDSALV-----LEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEM 371
              LC+ + +D+  V     L+ L     + GR +       GG    +D ++ +N L M
Sbjct: 294 ---LCVLLMLDALDVALETGLQALAGFQPLAGRGQTRTVAVPGGAFTLIDESYNANPLSM 350

Query: 372 I--LKNIRT-ITSGRIIVVF 388
               K++    T+GR IVV 
Sbjct: 351 TAGFKSLGARPTAGRRIVVL 370


>gi|157827094|ref|YP_001496158.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
 gi|166224722|sp|A8GW94|MURC_RICB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157802398|gb|ABV79121.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
          Length = 478

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 115/297 (38%), Gaps = 65/297 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G+ GK++  S V  + + +GL      PT  I+    +NR T     YL  + +YL
Sbjct: 116 VAVSGSHGKTTTTSLVACLFEAAGLH-----PT-VINGGIINNRSTNA---YLGSS-NYL 165

Query: 178 SSQG----VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            ++      T +S+ ++           I +I    TN+  +H+DY++      NA  R 
Sbjct: 166 IAEADESDATFISIPST-----------IAII----TNIDPEHLDYYKDFDTLINA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKR-------------------AHNAGCRVLSVGYQG 274
           F   LP    A+   D    +E++                     A N    + S  +  
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRELVNNITERKVITYGIDSDDAHITAFNISTDITSSTFDV 269

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           K I L  V  +   +++TI           P PG   + N+L A  + + +      +  
Sbjct: 270 K-ISLPNVSGVTIIEKITI-----------PTPGRHNILNSLAAISVGVELDFGIKAIKN 317

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL---KNIRTITSGRIIVVF 388
                  V  RF  V   ++   I  DYAH    ++  L   KNI     G++I +F
Sbjct: 318 GFNSFKGVKRRFTKVAEYNQASVID-DYAHHPEEIKATLSTAKNIANKQHGKVIAIF 373


>gi|311085956|gb|ADP66038.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 484

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 129/329 (39%), Gaps = 55/329 (16%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  + I+ SSA S   ++  A  + N PIL+     + L  F   +         AV+GT
Sbjct: 76  KNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKGI---------AVSGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            GK++  S +  I   SGL    I  G   +I+S+A+                  L S  
Sbjct: 127 HGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAK------------------LGSS- 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            ++   EA         L+   +I    TN+  DHID++            +F + +   
Sbjct: 168 -SYFITEADESDASFLYLNPNIIIV---TNIESDHIDHYDNSFKKLKQTFLIFLKKITLY 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISVE 296
             AI+  D+    +++    N  C++++ G+        F++ +     H      I   
Sbjct: 224 GTAIVCIDNNAICDILT---NLKCKIITYGFNKNADVRIFLYKQNNFIGH---FYIILKN 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV------- 349
            K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF+       
Sbjct: 278 NKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQ 337

Query: 350 GTNSRGGRIYV-DYAHTSNSLEMILKNIR 377
           G + R   + + DY H    L   +K IR
Sbjct: 338 GFDKRANCMLIDDYGHHPTELSETIKTIR 366


>gi|161504749|ref|YP_001571861.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189082495|sp|A9MQC1|MURC_SALAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160866096|gb|ABX22719.1| hypothetical protein SARI_02872 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 491

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 103/275 (37%), Gaps = 44/275 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  + V  I   +GL      PT                   L KA    
Sbjct: 122 IAIAGTHGKTTTTAMVSSIYAEAGLD-----PTFVNGG--------------LVKAAGVH 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YH----QTQQAYFNAKMR 232
           +  G +   + A +   D   L  ++ +    TN+  DH+D YH      +Q + N    
Sbjct: 163 ARLGHSRYLI-AEADESDASFLH-LQPMVAIVTNIEADHMDTYHGDFENLKQTFIN---- 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV 291
            F   LP    A++  DD   +E++ R    G +  + G+     + ++    I  +   
Sbjct: 217 -FLHNLPFYGRAVMCVDDPVIRELLPR---VGRQTTTYGFSDDADVRVEDYQQIGPQGHF 272

Query: 292 TISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  +G  D       PG     NA  A  +    GID   +L  LE       RF+F+G
Sbjct: 273 TLLRQGMPDLRVTLNAPGRHNALNATAAVAVATEEGIDDDAILRALESFQGTGRRFDFLG 332

Query: 351 ------TNSRGGRIYV--DYAHTSNSLEMILKNIR 377
                  N + G   +  DY H    ++  +K  R
Sbjct: 333 EFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAAR 367


>gi|149927130|ref|ZP_01915387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Limnobacter
           sp. MED105]
 gi|149824069|gb|EDM83290.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Limnobacter
           sp. MED105]
          Length = 495

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 70/189 (37%), Gaps = 35/189 (18%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L  H    +K  A +  N+ +DH+D+H   Q Y   K R+F E        +I
Sbjct: 177 LELSSFQL--HWTKRLKFDASTVLNITQDHLDWHPDMQEYAQDKFRIFSE----NGVCVI 230

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-------------QGKFIHLKKVCAIHNKQQVT- 292
             DDA    V+     AG RV + G              +G  + L ++     K Q T 
Sbjct: 231 NRDDAL---VLDANLPAGTRVSTFGTSAPAQVDDFGLIREGGMLWLAQLVGDQEKSQETP 287

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGL------------CIAIGIDSALVLEHLEKLH 340
           IS   +  + + P         AL   GL            C  +G+  A +L  L    
Sbjct: 288 ISTRRRKQEEVEPRQKLLMPIEALQVVGLHNASNALAALALCQGLGLPMAKLLHGLRSYQ 347

Query: 341 VVPGRFEFV 349
             P R + V
Sbjct: 348 GEPHRVQHV 356


>gi|148265987|ref|YP_001232693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
 gi|189082910|sp|A5G8K2|MURD_GEOUR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146399487|gb|ABQ28120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
          Length = 453

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 42/295 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GK++  +   +I    G  +F  G             +  P    L + ++ 
Sbjct: 110 LVAITGTNGKTTTTTLTGEIFAACGFKTFVGG------------NIGNP----LIELVT- 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI---KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S + V  V VE SS      +L+GI   +       N+  DH+D + T Q Y +AK+R+
Sbjct: 153 -SGEAVDRVVVELSS-----FQLEGIIDFRPQVAVLLNITEDHLDRYATYQEYIDAKLRI 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           FE     +  A++  DD     V   A     RV+    + +          +    +  
Sbjct: 207 FENQTSADY-AVLNMDDPL---VAAYAGKMKARVVPTSQRQELAQ----GIFYRNGSIVY 258

Query: 294 SVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             EG++  F    F L G   + N + A    + +G D+   L  LE    +P R EFV 
Sbjct: 259 RWEGREELFATASFRLKGVHNIDNIMAALASTLLMGCDAGQALAALEAFAGLPHRMEFV- 317

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
               G   Y D   T  ++  ++K++ +  SG  I +   G D+     P+ G +
Sbjct: 318 REVNGVAWYEDSKGT--NVGSVVKSLESFDSG--ITLIAGGKDKGGEYTPLAGLV 368


>gi|260584179|ref|ZP_05851927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
 gi|260158805|gb|EEW93873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
          Length = 453

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 113/279 (40%), Gaps = 41/279 (14%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +D  K       N+   H+DYH +++ Y  AK++L +     E   ++Y  D      + 
Sbjct: 178 IDQFKPKIACIVNIFSAHLDYHGSREEYIKAKLQLTKN--QTEDDYLVYNADYPELITLI 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFP-----LPGE 309
             H     V                +  N  +   SVEG    F    + P     +PG 
Sbjct: 236 EEHTNATLV--------------PFSRKNSLEFGASVEGDYICFNGEKVIPVSTIQVPGT 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSNS 368
             V N L A  +    G  +  + + ++  H V  R +FV   N R  R Y D   T  +
Sbjct: 282 QNVENVLAAVAIAKLAGATNEGIKKAVQNFHGVKHRTQFVKEVNKR--RFYNDSKAT--N 337

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +      +R+ T+  +I++ G G DR  G   +       + D+  V+      E  EK+
Sbjct: 338 IIATQTALRSFTNQSVILIAG-GLDRGNGFDEL-------IPDLTAVSGIVLYGETKEKL 389

Query: 429 R-AEIIHGIPGFIEKGNRI-EAIRTAIEMLNKQDVLVVA 465
           + A  + GIP  IE  N + EA + A E+  + D+++++
Sbjct: 390 QEAAKVAGIP-VIEVVNTLEEATKKAYEISKENDIILLS 427


>gi|114327095|ref|YP_744252.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315269|gb|ABI61329.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 462

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 33/165 (20%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL---SSFQIGPTSTISSFAQDNRL 162
           A RL G      + +TGT+GKS+  +    I + +G    +   +GP +       DN  
Sbjct: 105 AVRLSGSR-ARFVGITGTNGKSTTTALTAHILREAGCPVAAGGNLGPAALALPLLPDNG- 162

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                +Y+ +  SY+                    RL  ++  A +  NL  DHID H  
Sbjct: 163 -----VYVLEMSSYM------------------LERLQTLRFDAAAMLNLSPDHIDRHGD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKRAHNA 263
              Y  AK  +F+     +  A+I  DD    A ++ + K  H A
Sbjct: 200 MAGYETAKREIFQRQTGADL-AVIGIDDPLSAAMAETLRKDGHPA 243


>gi|111115130|ref|YP_709748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|216263734|ref|ZP_03435728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
 gi|110890404|gb|ABH01572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|215979778|gb|EEC20600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
          Length = 463

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ ++  S DSR I      G ++ A  GNK DG  F+   I  G +  + S  +   + 
Sbjct: 25  EKVVSFYSLDSREINDNNINGSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  +     +A+TG++GK++    +  I  +
Sbjct: 84  IEYLNDNEGLVFLLTSNVIKLLQTLASFLIKRTSFKRIAITGSNGKTTTKEILYSILSK 142


>gi|34499797|ref|NP_904012.1| UDP-N-acetylmuramate--L-alanine ligase [Chromobacterium violaceum
           ATCC 12472]
 gi|44888169|sp|Q7NQ00|MURC_CHRVO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|34105647|gb|AAQ62001.1| UDP-N-acetylmuramate-alanine ligase [Chromobacterium violaceum ATCC
           12472]
          Length = 464

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 39/190 (20%)

Query: 210 TNLGRDHID-----YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           TN+  DH+D     + + +QA+ +     F + +P    A++  DD   +E+ +R     
Sbjct: 179 TNIDADHMDTYDHSFDKLKQAFVD-----FLQRMPFYGRAVLCVDDPNVREIRERVTKP- 232

Query: 265 CRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG---KDFDFLFPLPGEFQVYNALVAAG 320
             V + G      I+ + V A   +    + V+      F  +  LPG   V NAL A  
Sbjct: 233 --VTTYGLDDSADIYAENVRAAAGQMHFDVVVKNGAITRFPLVLNLPGRHNVLNALSA-- 288

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----------GGRIYV--DYAHTSN 367
             IAIG++    +E ++K     G  EF G   R           GG   +  DY H   
Sbjct: 289 --IAIGLECGASIEAIQK-----GLSEFAGVGRRFQRYGEVKAQDGGSFTLIDDYGHHPV 341

Query: 368 SLEMILKNIR 377
            +   L  +R
Sbjct: 342 EMAATLAAVR 351


>gi|319944700|ref|ZP_08018964.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lautropia mirabilis
           ATCC 51599]
 gi|319741949|gb|EFV94372.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lautropia mirabilis
           ATCC 51599]
          Length = 552

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 18/135 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------TTPSPIY 169
           +++A+TGT+GK++V      +   +GL +   G  S     A  +RL        P+P+ 
Sbjct: 126 DVVAITGTNGKTTVTRLCAFLANEAGLEAVAAGNISPSMLDALMDRLGDLPIEPVPAPLQ 185

Query: 170 LAKALSYLSSQGVTH----------VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
            +      + + +             ++E SS  L   R    +  A    N+  DH+D+
Sbjct: 186 ESAPEDESAPESLPPSAAAAAMPRLWALELSSFQLAVSRPPACQ--AAVVLNVTPDHLDW 243

Query: 220 HQTQQAYFNAKMRLF 234
           H + + Y  AK+R++
Sbjct: 244 HGSMENYRAAKLRIY 258


>gi|126649728|ref|ZP_01721964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
 gi|126593447|gb|EAZ87392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
          Length = 449

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 13/160 (8%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL   H+DYH T   Y  AK  +       ES   IY  +A    V+  A  +  + +
Sbjct: 186 LTNLYDAHLDYHGTFDNYAEAKFAVTRN--QDESDYFIY--NADQPIVVGYAAQSNAQKI 241

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG 326
                G+ ++   + A     + TI  +G+ +       LPG+  + N L A   CI +G
Sbjct: 242 PFSSNGRTVN--GISA----DETTIYWQGEPYMDRANIALPGKHNLENILAAVAACILVG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            D   + E L     V  R +FV     G +IY D   T+
Sbjct: 296 CDKGKMEEVLATFGGVRHRTQFV-REWNGRKIYNDSKATN 334


>gi|110800740|ref|YP_697134.1| Mur ligase family protein [Clostridium perfringens ATCC 13124]
 gi|110675387|gb|ABG84374.1| Mur ligase family protein [Clostridium perfringens ATCC 13124]
          Length = 560

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 147/371 (39%), Gaps = 32/371 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK+S +  + +  +  G  S  +  T  I    +  +    +  Y AK +  
Sbjct: 165 IVSITGTNGKTSTSRLIYKGFENLGYFS-GLAMTGGIIINNEFVKKGDTTGFYSAKKV-- 221

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234
           L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+   
Sbjct: 222 LTNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITT 281

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGC----------RVLSVGYQGKFIHLKKVCA 284
            E+LP E   II A+     EV++   N             + +  G +  F+  + V  
Sbjct: 282 REVLP-EGKVIIKAEPKLY-EVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIF 339

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +     
Sbjct: 340 FDGKDKNIIS-NIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLREVVDSLKNIEC--D 396

Query: 345 RFEFVGTNS----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +  +G  +       +I +DY H   + E +      I   +II +    GDR      
Sbjct: 397 VYNNIGRQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIK 456

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTA 452
            +GKIA   +D  I+ +  + R  +  +I   I  GI     K   +       EAI+ A
Sbjct: 457 ELGKIAGKNSDTIIIKETFDRRGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIKKA 516

Query: 453 IEMLNKQDVLV 463
           I M  + D++V
Sbjct: 517 ISMAKEGDIIV 527


>gi|311693456|gb|ADP96329.1| UDP-N-acetylmuramate-L-alanine ligase [marine bacterium HP15]
          Length = 481

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 96/265 (36%), Gaps = 33/265 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S +  I   +GL  +F IG    ++S   + +L              
Sbjct: 122 IAVAGTHGKTTTTSLIASILGEAGLDPTFVIG--GKLNSAGTNAQLG------------- 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  ++  EA     D   L    +I+   TN+  DH+D +             F  
Sbjct: 167 ----GSRYLVAEADES--DASFLHLTPVIS-VVTNIEADHMDTYGGDVEKLKQTFVDFLH 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            LP    A++  DD Y +E++ R   A    G       Y+ + I+      +     V 
Sbjct: 220 NLPFYGVAVMCVDDGYVQEIIPRISRAIITYGIDNPEADYRAESINSD---GLRTHFVVK 276

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
                 D      +PG   V NAL A  +    G+    +   L     V  RF+  G  
Sbjct: 277 RPAGRSDLTVELKMPGRHNVLNALAAIAVATDEGVADDAICRGLAGFAGVGRRFQVYGDY 336

Query: 351 TNSRGGRIYV-DYAHTSNSLEMILK 374
              +G    V DY H    +E +++
Sbjct: 337 QTPKGTVTLVDDYGHHPTEVEAVIR 361


>gi|157693382|ref|YP_001487844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
 gi|167017279|sp|A8FGB7|MURC_BACP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157682140|gb|ABV63284.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
          Length = 432

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 131/377 (34%), Gaps = 94/377 (24%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            ER I  +  D  +IQ G   +A  GN   D H  I +A+++G   I             
Sbjct: 44  EERNIKILPFDPDNIQPGMTVIA--GNAFPDTHPEIERALSEGIPVI------------- 88

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                          KFL  +            +A+TG  GK+S    +  + Q +  +S
Sbjct: 89  ------------RYHKFLGEYMDSFTN------VAITGAHGKTSTTGLLAHVMQSAKPTS 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           + IG  S +    ++N     S  ++ +A  Y               H L  H    I  
Sbjct: 131 YLIGDGSGM---GKEN-----SEYFVFEACEY-------------RRHFLSYHPDYAI-- 167

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263
                TN+  DH DY       F+A    F+ +  +   AII   DD +  ++      A
Sbjct: 168 ----MTNIDFDHPDYFSDIDDVFDA----FQNMALQVKKAIIACGDDEHLPKI-----QA 214

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVY 313
              V+  G+  +             + V  + EG  FD          F  P  G   V 
Sbjct: 215 KVPVVYYGFNEE--------NDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAYGNHNVL 266

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMI 372
           N+L    LC    ID  L+   L     V  RF        G ++ + DYAH    +E+ 
Sbjct: 267 NSLAVIALCHYESIDVELIKGALTTFGGVKRRF---NEKVVGAQVLIDDYAHHPTEIEVT 323

Query: 373 LKNIRTITSGR-IIVVF 388
           ++  R     R I+ VF
Sbjct: 324 IEAARQKYPDREIVAVF 340


>gi|125625078|ref|YP_001033561.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|166224698|sp|A2RNJ0|MURC_LACLM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|124493886|emb|CAL98880.1| UDP-N-acetyl muramate-alanine ligase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071883|gb|ADJ61283.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 443

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH DY +  +   +A    F++        I     AY ++V  R  +A   +  
Sbjct: 171 TNIDFDHPDYFEGIEDVTSA----FQDYANNIKKGIF----AYGEDVNLRKLSAKAPIYY 222

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAA 319
            G++            +  + +  S  G  FD          F+ P  G+  V NAL   
Sbjct: 223 YGFEAN--------DDYRAENLIRSTRGSSFDAYFRGEKIGHFVVPAYGKHNVLNALSVV 274

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIR 377
            +C  +G+D   V +HL     V  RF    T  + G   +  D+AH    +E  L   R
Sbjct: 275 AVCHNLGLDMTDVADHLLTFRGVKRRF----TEKKVGETVIIDDFAHHPTEIEATLDAAR 330

Query: 378 TITSGR-IIVVF 388
                R I+ VF
Sbjct: 331 QKYPDREIVAVF 342


>gi|53729118|ref|ZP_00134082.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207507|ref|YP_001052732.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975477|ref|YP_001651070.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250498|ref|ZP_07336695.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244820|ref|ZP_07526919.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249218|ref|ZP_07531215.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251540|ref|ZP_07533447.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253774|ref|ZP_07535628.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256040|ref|ZP_07537828.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258231|ref|ZP_07539974.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260470|ref|ZP_07542165.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166222951|sp|A3MY91|MURC_ACTP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706335|sp|B0BRH8|MURC_ACTPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126096299|gb|ABN73127.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875578|gb|ABY68626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302650486|gb|EFL80645.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854265|gb|EFM86471.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306858742|gb|EFM90801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861004|gb|EFM93010.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863258|gb|EFM95198.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865462|gb|EFM97357.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867691|gb|EFM99536.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869873|gb|EFN01655.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 475

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 19/190 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D +        A    F   LP    A++ ADD   + V++ A   G +VL+
Sbjct: 192 TNIEPDHMDTYGGDFEQMKATYVKFLRNLPFYGLAVMCADD---ETVIEIAPQVGRQVLT 248

Query: 270 VGYQGKFIHLKKVCAIHNKQQV-------TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G+  K  +      I + QQ         +   G+  D L  +PG+    NA  A  + 
Sbjct: 249 YGFSEKADY-----RIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNALNATAALAVA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV--DYAHTSNSLEMILKNIRT- 378
              GI +  +L  L        RF+ +G+  R  G++ +  DY H    +++ +K  R+ 
Sbjct: 304 KEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARSG 363

Query: 379 ITSGRIIVVF 388
             + R++++F
Sbjct: 364 WENKRVVMIF 373


>gi|323343872|ref|ZP_08084099.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
 gi|323095691|gb|EFZ38265.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
          Length = 443

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 120/285 (42%), Gaps = 39/285 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I           P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKTAG---YDVGLAGNIGRSLALQVAEEPHEYYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +           N+  DH+D Y    Q Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYKFHANIAILLNITPDHLDRYEYCMQHYVDAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               ++S  I + DD   K  +++   H   C    +  +G   ++++      ++    
Sbjct: 203 NQTKQDS-FIYWNDDPIIKHELEKYDIHAVKCPFSELKEKGSIGYIEE-GQYKIEKPTPF 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++E ++      L G+  +YN+L AAG+   I GI   ++ + L     V  R E V   
Sbjct: 261 NMEQEE----LSLTGKHNIYNSL-AAGIASNISGIKKDIIRKSLSDFPGVEHRLEKVC-- 313

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
             GG  Y++ +  +N ++     + ++ +  I+++    G +D+G
Sbjct: 314 KVGGVQYINDSKATN-VDACWYALESMKTPTILIL----GGKDKG 353


>gi|311087110|gb|ADP67190.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087656|gb|ADP67735.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 129/329 (39%), Gaps = 55/329 (16%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  + I+ SSA S   ++  A  + N PIL+     + L  F   +         AV+GT
Sbjct: 45  KNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKGI---------AVSGT 95

Query: 124 SGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            GK++  S +  I   SGL    I  G   +I+S+A+                  L S  
Sbjct: 96  HGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAK------------------LGSS- 136

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            ++   EA         L+   +I    TN+  DHID++            +F + +   
Sbjct: 137 -SYFITEADESDASFLYLNPNIIIV---TNIESDHIDHYDNSFKKLKQTFLIFLKKITLY 192

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISVE 296
             AI+  D+    +++    N  C++++ G+        F++ +     H      I   
Sbjct: 193 GTAIVCIDNNAICDILT---NLKCKIITYGFNKNADVRIFLYKQNNFIGH---FYIILKN 246

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV------- 349
            K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF+       
Sbjct: 247 NKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMIASLKNFQGTCRRFEFLGFLSIDQ 306

Query: 350 GTNSRGGRIYV-DYAHTSNSLEMILKNIR 377
           G + R   + + DY H    L   +K IR
Sbjct: 307 GFDKRANCMLIDDYGHHPTELSETIKTIR 335


>gi|18311428|ref|NP_563362.1| hypothetical protein CPE2446 [Clostridium perfringens str. 13]
 gi|18146112|dbj|BAB82152.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 553

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 147/371 (39%), Gaps = 32/371 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GK+S +  + +  +  G  S  +  T  I    +  +    +  Y AK +  
Sbjct: 158 IVSITGTNGKTSTSRLIYKGFENLGYFS-GLAMTGGIIINNEFVKKGDTTGFYSAKKV-- 214

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234
           L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+   
Sbjct: 215 LTNPQVEVEVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITT 274

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGC----------RVLSVGYQGKFIHLKKVCA 284
            E+LP E   II A+     EV++   N             + +  G +  F+  + V  
Sbjct: 275 REVLP-EGKVIIKAEPKLY-EVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIF 332

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +     
Sbjct: 333 FDGKDKNIIS-NIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIEC--D 389

Query: 345 RFEFVGTNS----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +  +G  +       +I +DY H   + E +      I   +II +    GDR      
Sbjct: 390 VYNNIGRQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIK 449

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTA 452
            +G+IA   +D  I+ +  + R  +  +I   I  GI     K   +       EAI+ A
Sbjct: 450 ELGRIAGKNSDTIIIKETFDRRGREELEITNLIKSGINEIKNKSVEVLSIIDEEEAIKKA 509

Query: 453 IEMLNKQDVLV 463
           I M  + D++V
Sbjct: 510 ISMAKEGDIIV 520


>gi|86132113|ref|ZP_01050709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
 gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
          Length = 424

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 105/246 (42%), Gaps = 28/246 (11%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           ++I  + +     N V +D+R ++   I+ A+ G   +G+ F  QA+  GA   +V    
Sbjct: 1   MTIAELHFHFLDSNGVCTDTRSLEKNQIYFALKGENFNGNKFAQQALKSGASLAIVDEKE 60

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQ 135
            + D S         ++VD+    L   A+  R Y   P  I+ +TG++GK++    +  
Sbjct: 61  YVTDRS---------VLVDDVLSTLQQLANYHRNYLDIP--IIGITGSNGKTTTKELIYA 109

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +       S Q    +T  +   +N +  P  +     L+  +S  +  V + A+  G  
Sbjct: 110 VL------SEQYNVIATKGNL--NNHIGVPLTL-----LTMDASTEIGIVEMGANHQGEI 156

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           +   +  +   G  TN G+ H++     +     K  L+  L  +E+  +++ +D    +
Sbjct: 157 KMLCEIAQPNFGYITNFGKAHLEGFGGFEGVIKGKSELYNYL--RENNELVFINDQDEIQ 214

Query: 256 VMKRAH 261
           V + A+
Sbjct: 215 VRQSAN 220


>gi|23014460|ref|ZP_00054275.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 470

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           W  R    VS DSR +Q   +F+A+ G   DGH  +  A+A GA   +V           
Sbjct: 24  WEARG---VSIDSRTVQPSDLFIALEGPNHDGHDHVASALAGGAAGALV------HKLPK 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++ + P+++V +T   L         +   +I+AVTG+ GK+     +       G++ 
Sbjct: 75  GVQDDAPLILVRDTMTALQDLGVASRARSSAHIVAVTGSVGKTGSKEMLALALSDQGVTH 134

Query: 145 FQIG 148
           + +G
Sbjct: 135 YSLG 138


>gi|325299145|ref|YP_004259062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318698|gb|ADY36589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 444

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 72/353 (20%), Positives = 145/353 (41%), Gaps = 48/353 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118
           IP    Q  E++++++   ++  S  I +N P+++    +    +      G++    ++
Sbjct: 49  IPWEEGQHTESLILNADEVIK--SPGIPNNAPMILKLREQGTPIISEIEFAGRYTNAKMI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-L 177
            +TG++GK++  S +  I +++GL+   +G    I                  ++L+Y +
Sbjct: 107 CITGSNGKTTTTSLIYHIFKKAGLN---VGLAGNI-----------------GQSLAYQV 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEE 236
           +     +  +E SS  LD   +           N+  DH+D Y    Q Y +AK R+ + 
Sbjct: 147 AECNYDYYVIELSSFQLDN--MYKFHANIAVLMNITPDHLDRYDYKMQNYIDAKFRIIQN 204

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               ++      D    +E+ K   +      +   +       +   ++  + +  ++E
Sbjct: 205 QTDNDAFVFWNDDPIIREELHKYGIHGQYYPFAEKREDGLAAFSEQDKVYFTKPIEFNME 264

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++      L G   ++N++ AAG+   I GI  + + E L     V  R E V    RG
Sbjct: 265 QEE----LALTGTHNLFNSM-AAGISANIAGIRKSCIREALSDFKGVEHRLEKVA-RVRG 318

Query: 356 GRIYVDYAHTS-----NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
               VDY + S     NS    LK+++T T    +++ G G D+      I G
Sbjct: 319 ----VDYINDSKATNVNSCWYALKSMKTKT----VLILG-GKDKGNDYNEIAG 362


>gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
 gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
          Length = 808

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAH 364
           LPG   V NA  A G+ +  GI+ +++ + L+K   V  R E    N     +Y+ DYAH
Sbjct: 267 LPGRHNVLNAAAACGVALTFGIEISVIRKALKKFPGVQRRLE--QKNCSNKYLYLEDYAH 324

Query: 365 TSNSLEMILKNIR-TITSGRIIVVF 388
               +   L+ +R  +   R+I +F
Sbjct: 325 HPVEISHTLQAVRDAVGLRRVIAIF 349


>gi|317493281|ref|ZP_07951703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918674|gb|EFV40011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 438

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G S   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKSAGWS---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LKQECDLYV-LELSSFQLETTT--SLRAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ +DDA +  +      A  R +S G      HL       N+QQ  I +
Sbjct: 205 ----NAKVCVVNSDDALTMPI----RGADSRCVSFGADVGDYHL-------NRQQGEIWL 249

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +    L      + G+    NAL A  L  A+GI  A  L+ L     +  RF+ 
Sbjct: 250 RVRGEKILNTREMKITGKHNFTNALAALALADAVGIPRASSLKALTTFTGLAHRFQL 306


>gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
 gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
          Length = 821

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 29/231 (12%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +DSR +      +F A+     DGH +I +         VVS    L +F +   +N   
Sbjct: 29  TDSRRLSFPEQSLFFALKTKTNDGHRYIQELYKLRVRNFVVSDM--LPEFESMKDAN--F 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +T + L   A+    +    ++ +TG++GK+ V  F+ Q+      + F I     
Sbjct: 85  LIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLH----NEFNI----V 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
            S  + +++L  P  ++    +S  ++ G+    +   S   +  RL   I    G  TN
Sbjct: 137 RSPRSYNSQLGVPLSVW---QMSEKNTLGIFEAGI---SQPDEMERLQPIIAPTIGIITN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRA 260
           +G  H      Q+ + ++  +  E+L L  +  AIIY  DD +    ++ A
Sbjct: 191 IGEAH------QENFLSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESA 235


>gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4]
 gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4]
          Length = 821

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 101/231 (43%), Gaps = 32/231 (13%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDF 82
           R  +I+ + +DSR +      +F A+   + DGH ++ +   +G    VV      +Q F
Sbjct: 20  RSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVGELPADMQSF 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ Q+     L
Sbjct: 80  Q-----DANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQL-----L 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD 200
           S  ++    T S  + ++++  P  ++L    + L+    G++ +    +   +      
Sbjct: 130 SPDRV---VTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTI------ 180

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD 250
            IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   I+Y  D
Sbjct: 181 -IKPTVGILTNIGGAH------QENFFSLQDKCMEKLTLFKDCDVIVYDGD 224


>gi|91205778|ref|YP_538133.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii RML369-C]
 gi|109892734|sp|Q1RHX0|MURC_RICBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91069322|gb|ABE05044.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia bellii RML369-C]
          Length = 478

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 115/297 (38%), Gaps = 65/297 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G+ GK++  S V  + + +GL      PT  I+    +NR T     YL  + +YL
Sbjct: 116 VAVSGSHGKTTTTSLVACLFEAAGLH-----PT-VINGGIINNRSTNA---YLGSS-NYL 165

Query: 178 SSQG----VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            ++      T +S+ ++           I +I    TN+  +H+DY++      NA  R 
Sbjct: 166 IAEADESDATFISIPST-----------IAII----TNIDPEHLDYYKDFDTLINA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKR-------------------AHNAGCRVLSVGYQG 274
           F   LP    A+   D    +E++                     A N    + S  +  
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRELVNNITERKVITYGIDSDDAHITAFNISTDITSSTFDV 269

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           K I L  V  +   +++TI           P PG   + N+L A  + + +      +  
Sbjct: 270 K-ISLPNVSGVTIIEKITI-----------PTPGRHNILNSLAAISVGVELDFGIKAIKN 317

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL---KNIRTITSGRIIVVF 388
                  V  RF  V   ++   I  DYAH    ++  L   KNI     G++I +F
Sbjct: 318 GFNSFKGVKRRFTKVAEYNQASVID-DYAHHPEEIKATLSTAKNIANKQHGKVIAIF 373


>gi|262195186|ref|YP_003266395.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
           ochraceum DSM 14365]
 gi|262078533|gb|ACY14502.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
           ochraceum DSM 14365]
          Length = 490

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 14/123 (11%)

Query: 113 HPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           HPE  ++A+TGT+GKS+  +    +CQ +  S     PT     F   N    P    L 
Sbjct: 111 HPEAQLIAITGTNGKSTTTALTGALCQAA--SDAGAPPT-----FCGGNLGNHP----LI 159

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A+ + ++     V  E +   L+     G +    +  N+  DH+D + T   Y + K 
Sbjct: 160 EAVDHPANTAGGFVVAEVAGFMLET--CAGFRPNVAACLNITEDHLDRYGTMDVYASMKT 217

Query: 232 RLF 234
           R++
Sbjct: 218 RVY 220


>gi|217967148|ref|YP_002352654.1| FolC bifunctional protein [Dictyoglomus turgidum DSM 6724]
 gi|217336247|gb|ACK42040.1| FolC bifunctional protein [Dictyoglomus turgidum DSM 6724]
          Length = 443

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 21/152 (13%)

Query: 287 NKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAG----LCIAIGIDSALVLEHLEKLH 340
           N Q+  +S  GKD   +F  PL GE Q+ NA+ A G    L   + ID   V E  +K+ 
Sbjct: 246 NGQRFLLS--GKDINEEFFIPLLGEHQIVNAITAFGAIYLLRDKLSIDYETVREGFKKVQ 303

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNS---LEMILKNIRTITSGRIIVVFGCGGDRD-Q 396
            + GRF+ V   S+     +D AH   S   L   LKN   +   R+ ++ G   D+D +
Sbjct: 304 WM-GRFQIV---SKSPLTIIDGAHNVESAIALRDTLKN--YVNFNRLFLICGLMKDKDAE 357

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           G   I+  +      + + +    R+  PE++
Sbjct: 358 GFLKILNPLVYSYNFVPLSSH---RTRSPEEL 386


>gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
 gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
          Length = 821

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 101/231 (43%), Gaps = 32/231 (13%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDF 82
           R  +I+ + +DSR +      +F A+   + DGH ++ +   +G    VV      +Q F
Sbjct: 20  RSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVGELPADMQSF 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ Q+     L
Sbjct: 80  Q-----DANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQL-----L 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD 200
           S  ++    T S  + ++++  P  ++L    + L+    G++ +    +   +      
Sbjct: 130 SPDRV---VTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTI------ 180

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD 250
            IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   I+Y  D
Sbjct: 181 -IKPTVGILTNIGGAH------QENFFSLQDKCMEKLTLFKDCDVIVYDGD 224


>gi|303251841|ref|ZP_07338012.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249142|ref|ZP_07531149.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302649271|gb|EFL79456.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854430|gb|EFM86626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 475

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 19/190 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D +        A    F   LP    A++ ADD   + V++ A   G +VL+
Sbjct: 192 TNIEPDHMDTYGGDFEQMRATYVKFLRNLPFYGLAVMCADD---ETVIEIAPQVGRQVLT 248

Query: 270 VGYQGKFIHLKKVCAIHNKQQV-------TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G+  K  +      I + QQ         +   G+  D L  +PG+    NA  A  + 
Sbjct: 249 YGFSEKADY-----RIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNALNATAALAVA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV--DYAHTSNSLEMILKNIRT- 378
              GI +  +L  L        RF+ +G+  R  G++ +  DY H    +++ +K  R+ 
Sbjct: 304 KEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARSG 363

Query: 379 ITSGRIIVVF 388
             + R++++F
Sbjct: 364 WENKRVVMIF 373


>gi|317154472|ref|YP_004122520.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944723|gb|ADU63774.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 433

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 20/126 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAVTGT+GK++  + + +I + +G+ +F  G             + TP   YL      
Sbjct: 119 VLAVTGTNGKTTTTTLISEIFRHAGIKAFTGG------------NIGTPLCEYL------ 160

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  +    + +E SS  L   RL   K   G F N   +H+DYH+    Y +AK+ +F  
Sbjct: 161 LDMEQAEVIVLEVSSFQLQNCRL--FKPRVGLFLNFAANHLDYHEDMDEYLSAKLTMFSR 218

Query: 237 LLPKES 242
           +  +++
Sbjct: 219 MTGEDT 224


>gi|218961094|ref|YP_001740869.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729751|emb|CAO80663.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 464

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 113/287 (39%), Gaps = 56/287 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + + GT GK++  S    + + +GL      PT      + +F  +N + +         
Sbjct: 108 IGIAGTHGKTTSTSMAGSVLESAGLE-----PTIIVGGKVKNFGSNNVMGSGK------- 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                     ++ VEA  +  D   L     IAG  TN+  DH+D ++      ++ +  
Sbjct: 156 ----------YIVVEADEY--DHSFLTLTPCIAG-ITNVDADHLDCYRNLDEIKSSFIE- 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +   +P     I   DD   + ++   H    ++++ G+  +           + Q   I
Sbjct: 202 YANKVPFFGSVIACLDDPGVQAILPFIHK---KIVTYGFSRQ----------ADVQARDI 248

Query: 294 SVEG--KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            ++G    +D LF           + G+  + N+L+AA + + + I    + + L K   
Sbjct: 249 DMQGFNSSYDLLFKDYKLGRISLKVTGKHNIQNSLLAASIGLELDIPFPAIQDGLGKFSG 308

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           V  RF+  G  + G  +Y DYAH    +   L+  +     RI+ +F
Sbjct: 309 VYRRFDLKG-EAGGITVYDDYAHHPTEIIATLEGFKDSAKRRIVALF 354


>gi|270295564|ref|ZP_06201765.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274811|gb|EFA20672.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 432

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 105/231 (45%), Gaps = 22/231 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G +F+A+ G   +G+ F  +A+  G A AIV   AY+ +        +T 
Sbjct: 16  VTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPE-------GDTR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            +VV+N+ K L   A+    +    I+ +TGT+GK++    +  +  ++    + +G   
Sbjct: 69  YIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L       +  V + AS  G  +  ++  +   G  TN
Sbjct: 128 -------NNHIGVPLTL-----LRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261
           +G+ H++   + +     K  +++ L   KE+   I+ D+ Y K++    H
Sbjct: 176 VGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLH 226


>gi|226311546|ref|YP_002771440.1| hypothetical protein BBR47_19590 [Brevibacillus brevis NBRC 100599]
 gi|226094494|dbj|BAH42936.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 388

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 22/217 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
           ++AVTG++GK++    +  I       S ++    ++   +F  + R  T       K +
Sbjct: 22  VIAVTGSAGKTTTKEMIYSIL------SLRMPTYKSMYNKNFLGNTRAHT-------KRI 68

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-DYHQTQQAYFNAKMRL 233
                  V    +  S H L QH    I+   G  TN+G  HI ++    +    AK  L
Sbjct: 69  RDEHKAAVLEYGIYRSGH-LRQH-CKIIQPSMGVITNIGTAHIGNFGGDAKQLALAKTEL 126

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIH-NKQQ 290
              + P  +   +  D  YS+E +++ +  +   ++++ G + +  +      I  N  +
Sbjct: 127 IRHMKPTGT-VFLNRDCPYSREFVQQPYLGSFTGKIVTFGKEQEADYKAGRTKIEGNGFR 185

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              S+ G+   F  P+PGE  +YNAL A  +   +GI
Sbjct: 186 FECSLRGEKESFFVPIPGEHNLYNALAAIAVAHTMGI 222


>gi|157369007|ref|YP_001476996.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia proteamaculans
           568]
 gi|167017284|sp|A8G9S8|MURC_SERP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157320771|gb|ABV39868.1| UDP-N-acetylmuramate--alanine ligase [Serratia proteamaculans 568]
          Length = 492

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 134/350 (38%), Gaps = 78/350 (22%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+        L   R +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPELVAAREARIPVIRRAEMLAELMRFR-HG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  + V  I   +GL  +F  G    + +     RL + S   +A+A     S+L  Q +
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADESDASFLHLQPM 188

Query: 183 THV--SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             +  ++EA          D ++   G F NL          +Q + N     F   LP 
Sbjct: 189 VAIVTNIEA----------DHMETYQGDFENL----------KQTFIN-----FLHNLPF 223

Query: 241 ESPAIIYADDAYSKEVMKR----------AHNAGCRVLS---VGYQGKFIHLKKVCAIHN 287
              A++  DD   +E++ R          + +A  R+ S   VG QG F       +  +
Sbjct: 224 YGRAVMCVDDPVVRELLPRVGRHITTYGFSDDADVRIESYRQVGPQGHF-----TLSRQD 278

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K  +T+++           PG     NA  A  +    GID A +L  L        RF+
Sbjct: 279 KPLMTVTLNA---------PGRHNALNAAAAVAVATEEGIDDADILRALAGFQGTGRRFD 329

Query: 348 FVG------TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+G       N + G   +  DY H    ++  LK  R      R+++VF
Sbjct: 330 FLGEFPLEPVNGKSGSAMLVDDYGHHPTEVDATLKAARAGWPDKRLVMVF 379


>gi|297578608|ref|ZP_06940536.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           RC385]
 gi|297536202|gb|EFH75035.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           RC385]
          Length = 421

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL+A G C  + I    +++ L    +  GR + +   S    I +D A
Sbjct: 254 LPLP---NAATALMALG-CSGLAISDINIVDGLRNAQLA-GRMQVI---SHQPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  +S   +++ +      R I +VFG   D+D     +    A+     A ++   PR+
Sbjct: 306 HNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKDIASTVVELSPAVTYWYPASLS--GPRA 363

Query: 423 EDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                  A++   +P  I +  N + A   A+     QDV+VVAG  H    ++ + +K+
Sbjct: 364 ----ATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDVIVVAGSFHTVGEVLEHWQKR 419


>gi|149242346|pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|149242349|pdb|2JFG|A Chain A, Crystal Structure Of Murd Ligase In Complex With Uma And
           Adp
 gi|149242350|pdb|2JFH|A Chain A, Crystal Structure Of Murd Ligase In Complex With L-Glu
           Containing Sulfonamide Inhibitor
 gi|170785037|pdb|2UUO|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|170785038|pdb|2UUP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261087|pdb|2VTD|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261088|pdb|2VTE|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
          Length = 445

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  A +R++E
Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 307


>gi|300214728|gb|ADJ79144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus
           salivarius CECT 5713]
          Length = 458

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 25/217 (11%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--------GSFTN 211
           N+  T    Y+A  +   +SQ    V+ EA+S       L   +L+            TN
Sbjct: 134 NQGQTEGKAYVAGNIGVPASQ----VAQEATSKDTIVTELSSFQLLGITEYHPKVAVLTN 189

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   HIDYH T++ Y NAKMR+       +   + + ++ + +E+ +R+     +++   
Sbjct: 190 IYEAHIDYHGTRENYVNAKMRIVMNQTENDYFVVNWDNEEW-QELSQRSK---AKIVPFS 245

Query: 272 YQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             GK      V    +  K+   + V+         +PG   V NAL A  +    G  +
Sbjct: 246 RLGKSKDGAYVADGYLFYKEDKIMPVDN------IKVPGTHNVENALAAIAVAKIFGKSN 299

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             + E L     V  R ++V T   G + Y D   T+
Sbjct: 300 EDIKEVLTTFSGVRHRTQYV-TTLNGRKFYNDSKATN 335


>gi|149181058|ref|ZP_01859558.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1]
 gi|148851145|gb|EDL65295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1]
          Length = 443

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 105/286 (36%), Gaps = 64/286 (22%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + + +  +S+ IG  +         +    +  ++ +A  Y 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVIRGAKPTSYLIGDGT--------GKGEKDAEYFVFEACEY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H    I       TN+  DH DY       F A    F+E+
Sbjct: 162 ------------RRHFLSYHPDYAI------MTNIDFDHPDYFANVDDVFQA----FQEM 199

Query: 238 LPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTIS 294
             +    II   DD + +++      A   VL  G+  +  F            + V  +
Sbjct: 200 AMQVKKGIIACGDDEHLQKI-----QAKVPVLFYGFAEENDF----------QARNVNKT 244

Query: 295 VEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            EG  FD          F  P  G+  + NAL    LC    ID+ +V E L     V  
Sbjct: 245 PEGTTFDVFVRNEFFATFSIPGYGDHSIMNALSVIALCHYEDIDTEIVKERLTSFQGVKR 304

Query: 345 RFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVF 388
           RF        G +I + DYAH    +++ ++  R     R II VF
Sbjct: 305 RF---SEKKIGEQILIDDYAHHPTEIKVTIEAARQKFPDREIIAVF 347


>gi|288801604|ref|ZP_06407046.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
 gi|288335646|gb|EFC74079.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
          Length = 443

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 124/313 (39%), Gaps = 39/313 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   +  G    I +         P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKDAG---YDAGLAGNIGNSLALQVAEDPHEYYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y    + Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYDFRANIAILLNITPDHLDRYDYKFENYADAKMRIIQ 202

Query: 236 ELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               KE   I + DD    KE+ K   +A C   S   +   I   +      +Q    +
Sbjct: 203 NQT-KEDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEEGQYTIEQPEPFN 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +E +D      L G   +YN+L AAG+   I GI    + + L     V  R E V    
Sbjct: 262 MEQED----LSLTGRHNIYNSL-AAGIASDISGIKKENIRKSLSDFPGVEHRLEKVC--K 314

Query: 354 RGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             G  Y++ +  +N  +    L+++RT T    I++ G G D+      I   +    A 
Sbjct: 315 VAGVQYINDSKATNVDACWYALESMRTPT----ILIIG-GKDKGNDYNSIKDLVKQKCAG 369

Query: 412 IAIVTDDNPRSED 424
           I  +  DN +  D
Sbjct: 370 IVYLGADNKKLHD 382


>gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
 gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
          Length = 821

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 101/231 (43%), Gaps = 32/231 (13%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDF 82
           R  +I+ + +DSR +      +F A+   + DGH ++ +   +G    VV      LQ F
Sbjct: 20  RSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVGELPVDLQSF 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ Q+     L
Sbjct: 80  Q-----DANFLQLINPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQL-----L 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD 200
           S  ++    T S  + ++++  P  ++L    + L+    G++ +    +   +      
Sbjct: 130 SPDRV---VTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTI------ 180

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD 250
            IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   I+Y  D
Sbjct: 181 -IKPTVGILTNIGGAH------QENFFSLQDKCMEKLTLFKDCDVIVYDGD 224


>gi|7245651|pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7245652|pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7546574|pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|157834055|pdb|1UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  A +R++E
Sbjct: 147 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 204 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 250

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 251 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 306


>gi|309806966|ref|ZP_07700948.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166586|gb|EFO68783.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 198

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR   A  +FV +VG + DGH ++  A+A GA A +       Q   A    N
Sbjct: 24  VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAAL------WQKDHANRPEN 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P+LVVD+T   L   A     K    ++ +TG++GK++    V  +  +
Sbjct: 77  IPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSK 126


>gi|258645243|ref|ZP_05732712.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
 gi|260402593|gb|EEW96140.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
          Length = 469

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 126/328 (38%), Gaps = 44/328 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVSSA  + +       +  + +   +    ++F    +GK     +AV G  GKS
Sbjct: 67  ADVLVVSSAIGMDNPELQEAKSRDLPIFHRSDVLAAIFK---WGKG----IAVAGAHGKS 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + ++ + QI   +     ++ PT  +  F            YL K  S L      H+  
Sbjct: 120 TTSAMIGQIFHVA-----KMDPTIVLGGFTD----------YL-KGNSCLGHG--EHIIA 161

Query: 188 EASSHGLDQHRLDGIKLIAGSF----TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           EA          DG  L   +F    TN+  DH+D++ T +    A +     +  K+  
Sbjct: 162 EADES-------DGSFLKFATFLSVVTNIEDDHLDHYGTVENIRKAFVEFLNHVTYKDGG 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDF 300
           AI+  D    + ++ +      +V+S G        + V   + KQ +   V   + K  
Sbjct: 215 AIVCIDSEGVQAILPQIKK---KVISFGINDS-AEYRAVNKRYKKQNMLFDVYHYKEKLG 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V +AL A  + +  GI     ++ L     V  RF+       G  I  
Sbjct: 271 TVSLQIPGIHNVRDALGAIVVALYCGISFETSVKALSVFSGVKRRFQ-TKMKEHGVWIVD 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF 388
           DYAH    +   LK  + +   R+I  F
Sbjct: 330 DYAHHPTEIAATLKAAKEMGRHRVICAF 357


>gi|37527520|ref|NP_930864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|60390525|sp|Q7N145|MURD_PHOLL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|36786955|emb|CAE16029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 436

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 117/306 (38%), Gaps = 57/306 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L        +N  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVVSPGIALATAVLQAAANAGIEIVGDIELFCR--------EATAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ +    +++Q+G    I                   AL  L      +V +
Sbjct: 118 TVTSLVGEMAKA---ANWQVGVGGNIG----------------LPALELLKKSCQLYV-L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH+D Y Q    Y  AK+R++ +        I+
Sbjct: 158 ELSSFQLETTY--SLNATAAAVLNVTEDHMDRYPQGVSQYRAAKLRIYHQ----AKRCIV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---IHNKQQVTISVEGKDFDFL 303
            A D  +   M        R +S G       L    A   +HN Q +  + E K     
Sbjct: 212 NAQDPLTLPEM----GMDSRCVSFGVDCGDYQLDSENAFLKVHN-QSLLATNEIK----- 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYV 360
             L G     N LVA  L  A+GI        L  L V PG   RF+    N +G R   
Sbjct: 262 --LTGRHNYANGLVALALADAVGIPRE---ASLATLTVYPGLDHRFQLARLN-KGVRWIN 315

Query: 361 DYAHTS 366
           D   T+
Sbjct: 316 DSKATN 321


>gi|82775498|ref|YP_401845.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella dysenteriae Sd197]
 gi|309787233|ref|ZP_07681845.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
 gi|109892738|sp|Q32K01|MURC_SHIDS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81239646|gb|ABB60356.1| UDP-N-acetyl-muramate:alanine ligase [Shigella dysenteriae Sd197]
 gi|308924811|gb|EFP70306.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
          Length = 491

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPIRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLAPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|259419223|ref|ZP_05743140.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
 gi|259345445|gb|EEW57299.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
          Length = 469

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 16/130 (12%)

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGL 321
           A  R +++ Y+G   H            + +  EG+  +    P+PG+  V NAL A  +
Sbjct: 248 ADVRAVNLTYKGGVAHF----------DILLQAEGQKIEGCTLPMPGDHNVSNALSAVAV 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C  +G+    +   L     V  RF  VG    G  I  DY H    +  +LK  R    
Sbjct: 298 CRHLGMKLDEIRAALAAFGGVNRRFTKVG-EVDGVTIIDDYGHHPVEIAAVLKAARQAIG 356

Query: 382 ----GRIIVV 387
               GR+I V
Sbjct: 357 SEGEGRVIAV 366


>gi|269118797|ref|YP_003306974.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612675|gb|ACZ07043.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 445

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 121/310 (39%), Gaps = 49/310 (15%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPI 168
           Y      I+++TGT+GK++ A+ + ++ + +G  +   G    + +    D +     P 
Sbjct: 86  YMDKKTKIISITGTNGKTTTATKIYELLKEAGFDAELAGNAGFSFAKLVSDGK----EPD 141

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           Y+   LS    +       E  SH            IAG   NL  DH+  + +   Y+ 
Sbjct: 142 YVVLELSSYQLEN----DPEVHSH------------IAG-IINLTPDHLTRYNSLDDYYK 184

Query: 229 AKMRLFE----------ELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
            K  +F+           L  KE   II  + D   K   KR   +G +   V  +   I
Sbjct: 185 TKFNIFDHQNENDYALINLDDKEILRIISENKDIDDKIKAKRIFLSGEKKADVFQKDGMI 244

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           ++      HN Q + +    +       L G+  + N L    + + + +D  ++   L 
Sbjct: 245 NVTD----HNSQLIPLMKTSE-----LSLKGKHNLENILFIISVGMILNVDIEVMKSFLS 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQ 396
               +  R E      +G  ++++ +  +NS E  +K I       +++   CGG D+  
Sbjct: 296 STKPLEHRLE--NFFEKGKTVFINDSKGTNS-ESTIKAIEAFGKSTVLI---CGGYDKQA 349

Query: 397 GKRPIMGKIA 406
             + ++ KIA
Sbjct: 350 SNKELIDKIA 359


>gi|213585604|ref|ZP_03367430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 320

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 29  IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 69

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 70  LDADRELYV-LELSSFQLET--TSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE 126

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K    ++ ADDA +  V      A  R +S G      HL       N+QQ    +
Sbjct: 127 ----KAKVCVVNADDALTMPV----RGADERCVSFGVNMGDYHL-------NRQQGETWL 171

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             K    L      L G+    NAL A  L  A+G+  A  L+ L     +  RF+ 
Sbjct: 172 RVKGEKVLNVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQL 228


>gi|323356553|ref|YP_004222949.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Microbacterium
           testaceum StLB037]
 gi|323272924|dbj|BAJ73069.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Microbacterium
           testaceum StLB037]
          Length = 503

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 36/210 (17%)

Query: 180 QGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            G   + VE SSH L     Q+  D +   A    NL  DH+++H +  AY +AK  ++ 
Sbjct: 176 SGFDALVVELSSHQLWYLNRQNGPDALSPHASVCLNLADDHLEWHGSADAYRDAKAGVYA 235

Query: 236 ELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL--SVGYQGK--------------FI 277
               +   A +Y  AD A  + V +     G R +   +G  G               F+
Sbjct: 236 ----RTRVACVYNKADVATREMVEEAEVEEGARAIGFDLGVPGPSDLGVVDGILVDRAFL 291

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +   A+       ++  G        L     V N L A+ L  ++G+  A + + LE
Sbjct: 292 EERATSALELTTVADLAERG--------LAAPHVVANILAASALARSLGVAPADIHDALE 343

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           +  + P R + V  ++  G  +VD +  +N
Sbjct: 344 RFRLDPHRIQVVAAHA--GITWVDDSKATN 371


>gi|225549111|ref|ZP_03770086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
 gi|225370337|gb|EEG99775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
          Length = 463

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +    S  +   + 
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  K     +A+TG++GK++    +  I  +
Sbjct: 84  IKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK 142


>gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
 gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
          Length = 821

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 122/325 (37%), Gaps = 44/325 (13%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-------------YSLQDFSATIRSNTPI 92
           F A+   +  G  +IP    +G    V++                S+Q   A    N+ +
Sbjct: 17  FFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQL 76

Query: 93  -----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                L+V N  K L   A     K    ++ +TG++GK+ V  ++ Q+          +
Sbjct: 77  STLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQL----------L 126

Query: 148 GPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            P   I  S  + ++++  P  ++    LS  +  G+    +          R+  IK  
Sbjct: 127 SPDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGISEMGEMGALKRM--IKPT 181

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEVMKRAHN 262
            G  TN+G  H      Q+ +F+ + +  E+L L K+   +IY  D    S  V K    
Sbjct: 182 IGILTNIGGAH------QENFFSLQEKCMEKLTLFKDCDVVIYNGDNELISNCVAKSMLT 235

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A     S     + +++ +V    +   ++      D  F  P   +  + NAL     C
Sbjct: 236 AREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAAC 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE 347
           + +   +  + E + +L  +  R E
Sbjct: 296 LYLMTPADQITERMARLEPIAMRLE 320


>gi|312148181|gb|ADQ30840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi JD1]
          Length = 463

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +    S  +   + 
Sbjct: 25  ERVVSFYSLDSREIKDDNIDDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  K     +A+TG++GK++    +  I  +
Sbjct: 84  IKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK 142


>gi|255034326|ref|YP_003084947.1| cyanophycin synthetase [Dyadobacter fermentans DSM 18053]
 gi|254947082|gb|ACT91782.1| cyanophycin synthetase [Dyadobacter fermentans DSM 18053]
          Length = 906

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 27/251 (10%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           G  TN+  DH+  +  Q     A+++ +  E + ++  A++ A++ +   +  R     C
Sbjct: 571 GVITNIAADHLGLNGVQTLEDMARVKSVIAESVSRDGYAVLNAENEHCVALAARLE---C 627

Query: 266 RVLSVGYQGKFIH-LKKVC-----AIHNKQQVTI--SVEGKDFDFLFPLPGE------FQ 311
           ++       +  H L   C      I+    +TI  + E    + +  +P        F 
Sbjct: 628 KIAFFSINPENAHVLAHTCEGCLACIYRDGYITIIDASERIQIEHVRDIPATMGGKCPFM 687

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSN 367
           + N L A       G   + + + L    V     PGR        R   + VDYAH  +
Sbjct: 688 IENVLAAVLAAYCQGARLSQIRQGLRAFQVSDQSTPGRLNHFAF--RDFNVLVDYAHNPH 745

Query: 368 SLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDP 425
            L  + + ++TI  SG++ ++ G G  RD+  R  +G +A    D I I  DD+ R    
Sbjct: 746 GLHALGEYLKTIPASGKLGIITGVGDRRDEDIRE-LGNVAAGCFDQIIIRLDDDLRGRQQ 804

Query: 426 EKIRAEIIHGI 436
           +++   +  GI
Sbjct: 805 QQMIDLLKQGI 815


>gi|332686272|ref|YP_004456046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
 gi|332370281|dbj|BAK21237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
          Length = 455

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 120/262 (45%), Gaps = 29/262 (11%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCR 266
            TN+   H+DYH+T++ Y +AK ++ ++ + +E   II  +    +E++K  RA      
Sbjct: 187 ITNIYEAHLDYHKTRENYVSAKWQI-QQNMEQEDQLIINWNQPELREMVKTTRATVVPFS 245

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-- 324
              V   G ++  +    ++ K ++ +SV+         +PG   + NAL  A +C+A  
Sbjct: 246 TYEV-VNGAYLLNE---TLYFKDEIIMSVDE------LGVPGNHNIENAL--AAICVAKL 293

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             I +  + E L +   V  R +++ T  +  R + + +  +N L   +  +    S ++
Sbjct: 294 YNIANESIRETLHRFSGVAHRTQYIDTIKQ--RKFYNDSKATNILATKMA-LSGFPSNQL 350

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKG 443
           I++ G G DR      ++  +  DL  I +        E  EK+R    + G+       
Sbjct: 351 ILLAG-GLDRGNDFDELI-PVLKDLKGIVLF------GETKEKLRKIAKNAGVLIIKTAA 402

Query: 444 NRIEAIRTAIEMLNKQDVLVVA 465
           N  +A+R A E+  K D ++++
Sbjct: 403 NMTDAVREAFEISQKNDTILLS 424


>gi|188527417|ref|YP_001910104.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
 gi|188143657|gb|ACD48074.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
          Length = 470

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 146/336 (43%), Gaps = 68/336 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKAL 174
           ++A+TG+ GK+S+  F+ QI Q +  +       +T+   A D    L   S IY+A+A 
Sbjct: 147 VIAITGSFGKTSIKKFLLQILQTTFNTHASPKSVNTLLGLANDINQNLDDRSDIYIAEAG 206

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   ++G     ++  +H ++ H    + ++A     +G  H++Y +T +     K  L 
Sbjct: 207 A--RNKG----DIKEITHLIEPH----LAVVA----EVGEQHLEYFKTLENICETKAELL 252

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVT 292
           +                      KR   A C  +     Y  K   L    ++    Q T
Sbjct: 253 DS---------------------KRLEKAFCYSVEKINPYAPKDSPLIDYSSLVKNIQST 291

Query: 293 ISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHV 341
           +  +G  F+ L           + G+F  YN  +A+ + IA  +G+++  +   + +L+ 
Sbjct: 292 L--KGTSFEMLIGSVWESFETKVLGKFNAYN--IASAILIAKHLGLETERIKRLVLELNP 347

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGR-IIVVFGCGGDRDQGK 398
           +  R + +  N    +I +D +   N L+ +L+ IR  ++  GR +IV  G      +  
Sbjct: 348 IAHRLQLLEVNQ---KIIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESN 403

Query: 399 RPIMGKIALDLADIAIVTDD-NPRS-----EDPEKI 428
             +  KI  ++ D+AI+T + N ++     + P+KI
Sbjct: 404 ETLAQKID-EVFDVAIITGELNSKTIASQLKTPQKI 438


>gi|187777501|ref|ZP_02993974.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
 gi|187774429|gb|EDU38231.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 21/122 (17%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P NI  VTG+ GK++  + V ++ ++ G  ++  G   T   FA    +     + L   
Sbjct: 116 PANIFGVTGSDGKTTTTTLVYEMLKKEGYKTWVGGNIGT-PLFANIEEMKEDHMVVLE-- 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              LSS  +  + V              I LI    TNL  +H+D H+  + Y  AK  +
Sbjct: 173 ---LSSFQLMTMDVSPE-----------ISLI----TNLSPNHLDVHKDFEEYVEAKKNI 214

Query: 234 FE 235
           F+
Sbjct: 215 FK 216


>gi|119469215|ref|ZP_01612199.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
 gi|119447467|gb|EAW28735.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
          Length = 483

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 102/277 (36%), Gaps = 53/277 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  I  ++GL  +F IG    + + A  N     S   +A+A   
Sbjct: 121 IAIAGTHGKTTTTSLIASIYAQAGLDPTFIIG---GLLNSAGSNAKVGKSDFLIAEADES 177

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH+D +            
Sbjct: 178 DASFLHLQPMVSV-----------------------ITNIEEDHMDTYGGSLEKMKDTYV 214

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-------YQGKFIHLKKVCA- 284
            F   LP    A++  D   + E++ R    G  +++ G           F      C  
Sbjct: 215 DFIHNLPFYGLAVVCIDSEVAAELIPRF---GRPIITYGESPTADYRMSDFSQSANTCTF 271

Query: 285 -IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            + NKQ       G+       +PG+    NA  A  +     I +  +LE L+K   + 
Sbjct: 272 TVTNKQ-------GECLTATLNMPGKHNALNATAAIAVAKDQNIANQAILEALQKFEGIG 324

Query: 344 GRFEFVG--TNSRGGRIYV-DYAHTSNSLEMILKNIR 377
            RF+  G   N RG  + V DY H  + +   +  +R
Sbjct: 325 RRFQQYGEFENERGNIMLVDDYGHHPSEVAATIAAVR 361


>gi|324328360|gb|ADY23620.1| folylpolyglutamate synthase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 434

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+  DF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEHLDFTCPFASFEDVRISMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K + +      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+   +K+ +          E  N  EAI T +EML
Sbjct: 352 --HNMVGQLESIADEIIFTTFAFDRAISADKLASYAKEESKLVFE--NWKEAIDTKVEML 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 GENDVFIITG 417


>gi|258627104|ref|ZP_05721900.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio mimicus
           VM603]
 gi|258580622|gb|EEW05575.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio mimicus
           VM603]
          Length = 421

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 22/183 (12%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL+A G C  + I    ++E L    +  GR + +   SR   I +D A
Sbjct: 254 LPLP---NAATALMALG-CSGLEISDIDIVEGLRNAQLA-GRMQVI---SREPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPR 421
           H  +S   +++ ++     + I +V G   D+D         IA  +A++  +V+   P 
Sbjct: 306 HNPHSAHYLVEQLKQRYPHQTIHLVLGMLHDKD---------IASTVAELKPVVSHWYPA 356

Query: 422 S-EDPEKIRAE-IIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           S   P    AE +   +P G  +  N + A   A+   +  DV+VVAG  H    ++ + 
Sbjct: 357 SLSGPRAATAEQLCQYLPAGNTQYANPVAAFEAALTQTSAHDVIVVAGSFHTVGEVLEHW 416

Query: 479 EKK 481
           +K+
Sbjct: 417 QKR 419


>gi|257125322|ref|YP_003163436.1| FolC bifunctional protein [Leptotrichia buccalis C-1013-b]
 gi|257049261|gb|ACV38445.1| FolC bifunctional protein [Leptotrichia buccalis C-1013-b]
          Length = 455

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F+ PL G+FQ  N L+A  +    GI   ++ + L+++  + GRFE     S      +D
Sbjct: 267 FILPLFGKFQANNFLIAYEIAKIYGISDEIIQKGLDEIS-LAGRFEIF---SPKPITILD 322

Query: 362 YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRD 395
            AH  +S+ ++++N+  +  +  +I +    G +D
Sbjct: 323 VAHNHDSVRVLVENLNELFKNDEVIFILSILGTKD 357


>gi|194862694|ref|XP_001970076.1| GG10434 [Drosophila erecta]
 gi|190661943|gb|EDV59135.1| GG10434 [Drosophila erecta]
          Length = 341

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99
           ++A WIF A++   +DG+  IP       E++V+   +  +D++  +      ++VD  R
Sbjct: 216 VKASWIFSAVLDESDDGNYIIPN-----TESVVLGGTHQERDYNTQVCQQDRRMIVDGCR 270

Query: 100 KFL 102
           +++
Sbjct: 271 RYI 273


>gi|78484911|ref|YP_390836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
 gi|118595701|sp|Q31I61|MURD_THICR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78363197|gb|ABB41162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
          Length = 449

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 28/135 (20%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA R  GK    I+A+TG++GKS+V + V +  + +G   + +G    I   A D  
Sbjct: 91  IELFA-RAAGKP---IVAITGSNGKSTVTTLVAEALKEAG---YAVGVGGNIGCPALD-L 142

Query: 162 LTTPSP--IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           LT P+   +Y+                +E SS  L+      ++ IA +  N+  DH+D 
Sbjct: 143 LTHPTEFDVYV----------------LELSSFQLETTY--SLQTIAATVLNISEDHMDR 184

Query: 220 HQTQQAYFNAKMRLF 234
           +   + Y  AKM + 
Sbjct: 185 YLALEDYIQAKMTIL 199


>gi|304445552|pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Rhodanine Inhibitor
 gi|306991519|pdb|2X5O|A Chain A, Discovery Of Novel 5-Benzylidenerhodanine- And
           5-Benzylidene- Thiazolidine-2,4-Dione Inhibitors Of Murd
           Ligase
          Length = 439

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 38/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  A +R++E
Sbjct: 147 LDDECELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ ADDA +  +      A  R +S G      HL      H + +  + V
Sbjct: 204 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 250

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +G+    +    L G+    NAL A  L  A G+  A  L+ L     +P RFE V
Sbjct: 251 KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 306


>gi|300813304|ref|ZP_07093659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512575|gb|EFK39720.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 438

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 177 LSSQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L ++    + +EASS  L D H     K      T + +DH+D+H+T+  Y NAK ++F 
Sbjct: 142 LEAKNNDFIVIEASSFQLEDTHEF---KPKVALLTYVTKDHLDWHKTEDNYRNAKYKIFA 198

Query: 236 ELLPKESPAIIYADD 250
               K+  +II  DD
Sbjct: 199 N-QDKDDFSIINYDD 212


>gi|218234174|ref|YP_002369264.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus B4264]
 gi|218162131|gb|ACK62123.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus B4264]
          Length = 433

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGERFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K +        +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+   +K+ +          E  N  EAI T +EM+
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE--NWKEAIDTKVEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 AENDVFIITG 417


>gi|167773014|ref|ZP_02445067.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
 gi|167664947|gb|EDS09077.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
          Length = 453

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 125/326 (38%), Gaps = 39/326 (11%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ IV ++A      +  A   S TP +     R  L  F + LY    E+ + V GT 
Sbjct: 69  GADLIVYTAAIMDDNPELRAAFASKTPTV----ERAELLGFLTGLY----EDCICVCGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + + Q+   +GL      PT+ I             P       +  SS  V  
Sbjct: 121 GKTTTTAMLTQMLLGAGLD-----PTAVIGG---------KLPAIGGNGRAGESSLMVCE 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            + E   H L  H    + L      N+  DH++Y  T +    +  + F ++  +    
Sbjct: 167 -ACEFKDHFLQLHPDLSVIL------NVDADHLEYFGTIENIIKSFHK-FADMTTR--TI 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           I+   D  S   ++  +  G  +++ G+   F +          Q +  +   G+    L
Sbjct: 217 IVNGSDPNSMRAVEGIN--GKEIITFGWDEHFDYYPANIRRKGAQAEFDLCCGGRALTHL 274

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   + NA  A    I  G+    + EHL +      RFE +G    G  I  DY
Sbjct: 275 TLHVPGLHNILNATAACAAAIKSGVPVTALGEHLAQFRGAGRRFEILG-EVHGVTIADDY 333

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVF 388
           AH    + + L+  R +   R+  VF
Sbjct: 334 AHHPAEIAVTLRAAREMDFRRVWAVF 359


>gi|241664306|ref|YP_002982666.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12D]
 gi|240866333|gb|ACS63994.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12D]
          Length = 483

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 134/317 (42%), Gaps = 58/317 (18%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA A+VVS+A         +R + P ++    ++   +  + +  +    +  +A+ GT 
Sbjct: 64  GANAVVVSTA---------VRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S V  +    GL  +F IG    ++S   + RL T   I +A+A     S+L+ 
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFI-VAEADESDASFLNL 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
             V  V     +  +D +  D        F  L +  I++ Q    Y  A + +      
Sbjct: 172 FPVIEVITNIDADHMDTYGHD--------FARLKQAFIEFTQRLPFYGIAVLCVDDPNVR 223

Query: 236 ELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           E+LP  S  ++   +A+DA  + V  RA         V  + +F  ++++   H +  ++
Sbjct: 224 EILPFVSKPVVRYGFAEDAQVRAVNARA---------VDGRMEFTVIRQLNG-HAEPPLS 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           I++          LPG   V NAL A  +   + +    +++ L + + V  RF+  G  
Sbjct: 274 ITLN---------LPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEV 324

Query: 351 -TNSRGGRIYV--DYAH 364
            T    GR  +  DY H
Sbjct: 325 PTADGKGRFTLIDDYGH 341


>gi|126695359|ref|YP_001090245.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542402|gb|ABO16644.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 448

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 111/282 (39%), Gaps = 61/282 (21%)

Query: 118 LAVTGTSGKSSVASFVQ---QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           LAV G+ GK+S ++F+    ++C R+  SS   G                  PIY +   
Sbjct: 99  LAVAGSHGKTSTSTFLSTILELCTRNS-SSITGGII----------------PIYNSNC- 140

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-------TQQAYF 227
            +L +       V+ S   +++++ D      G   N+  DH D+         T +++ 
Sbjct: 141 -HLDNTKYLVAEVDESDGTINKYKSD-----IGIINNIDFDHCDHFSNLNEVISTFKSFA 194

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
               +L      + S    Y++  +S    K   N    ++ +              I++
Sbjct: 195 KNSKKLLLNFDCETSRNNFYSNWKWSNSTAK---NVTYAIIPI-------------EINS 238

Query: 288 KQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           K  +    E  +F      P+PG   + N   A      IG+D   + ++++ L +   R
Sbjct: 239 KYTIGKYYENGNFISSLNIPIPGLHNLSNITAAIAASRMIGVDFIEIKKNIKYLKLPKKR 298

Query: 346 FEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           FEF G  + R   +Y DYAH  N ++       TI  GR+++
Sbjct: 299 FEFRGQLDERS--LYDDYAHHPNEIK------ETIKLGRLLI 332


>gi|91201183|emb|CAJ74243.1| similar to UDP-N-acetylmuramoylalanine D-glutamate ligase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 476

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 37/260 (14%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + VTG++GKS+  + +  I Q++  +   +G     S   Q   +  P+ I     
Sbjct: 128 PAFTIGVTGSNGKSTTTTLIGDILQQTS-NKIWVGGNIGKSLLLQLEEMK-PADI----- 180

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                      V +E SS  L+   L  IK        TN+  +H+D H+   +Y +AK 
Sbjct: 181 -----------VVLELSSFQLES--LSSIKKSPCISIVTNISPNHLDRHKDIDSYIHAKK 227

Query: 232 RLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            +   L  K+S  AI+  DD   +   K  +    RVL    Q       +  A    + 
Sbjct: 228 NII--LHQKQSDSAILNYDDTELRTWGKECYG---RVLWYSTQQPV----ENGAFRENEH 278

Query: 291 VTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           + IS++G            LPG+  ++N L A+      G +   + + +     +  R 
Sbjct: 279 IVISIDGNTISIPCVSKIKLPGDHNLHNVLAASCATYLHGANKQTIEKTVTSFCGLEHRL 338

Query: 347 EFVGTNSRGGRIYVDYAHTS 366
           EFV   ++G R Y D   T+
Sbjct: 339 EFV-REAKGIRYYNDSKATT 357


>gi|330752054|emb|CBL80565.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 31/234 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R+I  G +F A+ G   +G+ F  +A+ QGA   VV           T+  +  I
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE---------TMDQDIRI 63

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +  + L   A          +  +TG++GK++    +  +     LS+       T
Sbjct: 64  IQVSDVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAV-----LST----KYKT 114

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGS 208
            ++F   +N +  P        L+ LS    T +++    ++H L+   L  I +   G 
Sbjct: 115 HATFGNLNNHVGVP--------LTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGY 166

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            TN G+ H++     +     K  L++     ++  ++  DD+   E  K  HN
Sbjct: 167 ITNYGKAHMEGFGGLEGIIKGKSELYDFAFEHQTQVMVNFDDSLQSEKTKD-HN 219


>gi|299133064|ref|ZP_07026259.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
 gi|298593201|gb|EFI53401.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
          Length = 1310

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 31/276 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV+G+ GKSS  + +  I + SG   S  +G  S      Q       S I++A+A   
Sbjct: 107 VAVSGSHGKSSTTTMIANILRASGQDVSHVVGAPSECLDNIQGR--CGASDIFVAEACEA 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              Q +  +S +             I LI     N+  DHI+++ + +    A  R F  
Sbjct: 165 F--QNLAPLSPD-------------IALI----LNIDDDHIEHYGSVEKLHGA-FRDFAG 204

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV 295
            +      I+  +DA ++++   A +A   V + G+   F +H   +         ++  
Sbjct: 205 RIRNGGALIVNGEDARARDI---AASAIAPVTTFGFAAGFDVHAAHIAMDGGGSTFSVIA 261

Query: 296 EGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G +   L   +PG   + NAL     C+A+ +  A +    E+   V  R++  G    
Sbjct: 262 YGAELGTLRLKVPGRHMIGNALACVAACLALDVSFAGIQRGFEQFTGVSRRWQMHG-EVH 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVF 388
           G R+  DYAH    L   L+  R I   SG + + F
Sbjct: 321 GVRLIDDYAHHPTELRACLETARLIAAHSGSLCIAF 356


>gi|332187398|ref|ZP_08389136.1| mur ligase family, catalytic domain protein [Sphingomonas sp. S17]
 gi|332012559|gb|EGI54626.1| mur ligase family, catalytic domain protein [Sphingomonas sp. S17]
          Length = 461

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  +     +PG   V NAL A G  +A G+     +  +E+   +  RFE VG  + G 
Sbjct: 266 GAGYHVRLSVPGRHNVSNALAAIGASVAAGVPLIDAIRAVERFTGLKRRFEKVG-EANGV 324

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            +  D+ H  + +   L  +     GR++++F
Sbjct: 325 TVIDDFGHNPDKIAATLDTLHAF-PGRLLILF 355


>gi|307704455|ref|ZP_07641365.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK597]
 gi|307621975|gb|EFO01002.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK597]
          Length = 444

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G      ++         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASELLRSTTGSTFTVHFRGQELGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|302557646|ref|ZP_07309988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
 gi|302475264|gb|EFL38357.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
          Length = 462

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 35/225 (15%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKR------------AHNAG 264
           H    A      + FE  + +  P    +I AD   ++E+ +R            + +A 
Sbjct: 190 HHANYASMEEIHQSFETFVGRVVPGGTLVISADHEGARELTRRLDGSVRTVTYGESADAD 249

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            RVLSV  QG             + +VT+ ++G    F   +PG    +NA+ A     A
Sbjct: 250 VRVLSVVPQGL------------RSEVTVELDGAPLTFTVSVPGRHYAHNAVAALAAGAA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           +GI +A +   L     V  R +  G  + G ++   YAH    +   L+ +R      R
Sbjct: 298 LGIPAAELAPALAAYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMTADLEAMRAAAGDAR 356

Query: 384 IIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           I+VVF        R+ GK   MG+ +L LAD ++V D  P  EDP
Sbjct: 357 ILVVFQPHLFSRTRELGKE--MGQ-SLSLADASVVLDIYPAREDP 398


>gi|238026133|ref|YP_002910364.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia glumae BGR1]
 gi|237875327|gb|ACR27660.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia glumae BGR1]
          Length = 466

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 33/255 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++  S V  +    GL  +F IG    + S   + RL              
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLG------------- 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S   +   + E+ +  L+ + +  I++I    TN+  DH+D +    A        F +
Sbjct: 153 -SGDFIVAEADESDASFLNLYPV--IEVI----TNIDEDHMDTYGHDFARLKQAFIEFTQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LP     ++  DD   ++++        R  L+   +   +  ++V A   +   T   
Sbjct: 206 KLPFYGSVVVCVDDPNVRQILPFISKPVVRYGLAPDAE---VRAEQVAARDGRMHFTAIR 262

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
           EG+     +  LPG   V NAL A  +   +G+  A + + L   + V  RF+  G    
Sbjct: 263 EGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVADAAIQQALADFNGVGRRFQRYGEIAT 322

Query: 353 SRGGRIYV---DYAH 364
           + G   Y    DY H
Sbjct: 323 ADGAGSYTLVDDYGH 337


>gi|255659952|ref|ZP_05405361.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
 gi|260847826|gb|EEX67833.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
          Length = 465

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 85/228 (37%), Gaps = 26/228 (11%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D++ T +    A  +  + +  +   A+I  D            N   R ++
Sbjct: 186 TNVEDDHMDHYGTMENIIKAFTQFIQNVDKETGYAVICFD------------NENLRNMA 233

Query: 270 VGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVA 318
                K+I +     A +  + +T S  G  FD              +PG   V +A+  
Sbjct: 234 KNLDRKYITYAIDHEADYRAKNITHSGTGISFDVFHGEEELGHVDLNIPGRHNVLDAMAC 293

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               ++IG+    +   L   H    RF+  G    G  I  DYAH    +   LK  + 
Sbjct: 294 IVTGLSIGVSFEKMASGLAAFHGAKRRFQTKG-RVNGVWIVDDYAHHPTEIAATLKAAKE 352

Query: 379 ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
               R+I VF      R Q      GK A   AD+ ++TD     E P
Sbjct: 353 TNPKRLICVFQPHRYSRTQLLHEEFGK-AFVSADVLVLTDVYAAGEAP 399


>gi|195338757|ref|XP_002035990.1| GM16217 [Drosophila sechellia]
 gi|194129870|gb|EDW51913.1| GM16217 [Drosophila sechellia]
          Length = 341

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            ++A WIF A++   +DG+  IP       E++V+   +  +D+++ +      ++VD  
Sbjct: 215 RVKANWIFSAMLDESDDGNYIIPN-----TESVVLGGTHQERDYNSKVCQKDRQMIVDGC 269

Query: 99  RKFL 102
           R+++
Sbjct: 270 RRYI 273


>gi|332663138|ref|YP_004445926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331952|gb|AEE49053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 441

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 138/352 (39%), Gaps = 53/352 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKALS 175
           + +TG++GK++  + V  +   +G+     G      SFA   R+      P Y+ +  S
Sbjct: 110 IGITGSNGKTTTTNLVYHLLATAGMDVAMGGNVG--KSFA---RIVAERDYPFYVLELSS 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLF 234
           +                G+ ++R D I +I     N+  DH+D +  Q + Y  AK  + 
Sbjct: 165 F-------------QLEGIREYRPD-IAMI----LNITPDHLDRYDYQLEKYAAAKFNIV 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     E   +  ADD           N G ++     Q K + +    +    +   + 
Sbjct: 207 KAQ-QAEDTFLYNADDP----------NVGGQLEHYPTQAKAVPI----SFQMTEGTRLK 251

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V G  FD    PL G     NAL A  + + +GI    + E L      P R E V T  
Sbjct: 252 VGGYTFDMSTTPLMGRHNYMNALFAVQVALQVGIAPEAIQEGLNTFVNAPHRLEKVATVE 311

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             G  Y++ +  +N ++ +   +  ++   + +V G     D G  P++  +   +  + 
Sbjct: 312 --GVEYINDSKATN-VDSVYYALEAMSRPTVWIVGGQDKGNDYG--PLLEFVKAKVKAVV 366

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +  DN       KI       +   +E G+ +EA+  A  + +  D ++++
Sbjct: 367 CMGLDN------RKIVQCFSGIVENIVETGSAVEAVTAAARLASPGDTVLLS 412


>gi|195117204|ref|XP_002003139.1| GI23973 [Drosophila mojavensis]
 gi|193913714|gb|EDW12581.1| GI23973 [Drosophila mojavensis]
          Length = 341

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            ++A W+F AI+   +DG+  IP       E++V+   +  +D++  + +     ++D  
Sbjct: 215 RVRANWVFTAILDESDDGNYIIPN-----TESVVLGGTHQERDYNTDVCAKDKRFIIDGC 269

Query: 99  RKFLSLFASRLYGKHPENILAVTG 122
           R  L         KH E++    G
Sbjct: 270 RSLLPGL------KHSEHLFDWVG 287


>gi|289168335|ref|YP_003446604.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus mitis B6]
 gi|288907902|emb|CBJ22742.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus mitis B6]
          Length = 444

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G      ++         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASELLRSTTGSTFTVHFRGQELGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|282882890|ref|ZP_06291495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297301|gb|EFA89792.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
          Length = 438

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 177 LSSQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L ++    + +EASS  L D H     K      T + +DH+D+H+T+  Y NAK ++F 
Sbjct: 142 LEAKNNDFIVIEASSFQLEDTHEF---KPKVALLTYVTKDHLDWHKTEDNYRNAKYKIFA 198

Query: 236 ELLPKESPAIIYADD 250
               K+  +II  DD
Sbjct: 199 N-QDKDDFSIINYDD 212


>gi|228987709|ref|ZP_04147820.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771983|gb|EEM20438.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 433

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 39/197 (19%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K + +      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKGNRI------EAI 449
               ++G++     +I   T    R+         I+ G +  + +K +++      EAI
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRA---------ILAGELASYSKKESKLVFENWKEAI 400

Query: 450 RTAIEMLNKQDVLVVAG 466
            T +EML + DV ++ G
Sbjct: 401 DTKVEMLGENDVFIITG 417


>gi|227494646|ref|ZP_03924962.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
 gi|226831828|gb|EEH64211.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
          Length = 494

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 23/119 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT+GK++    V  I + +G            + +A    +  P    + KA    
Sbjct: 124 LAITGTNGKTTTVGLVGSILEAAG------------AKYAVVGNVGEPIVTTVLKA---- 167

Query: 178 SSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               V  ++VE SS  L+  H L  +  +     N+  DH+D+H + + Y +AK R++E
Sbjct: 168 ---DVEVLAVELSSFQLETTHTLSPLAAVC---LNVDADHLDWHGSVENYRDAKARIYE 220


>gi|195941342|ref|ZP_03086724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi 80a]
          Length = 463

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +    S  +   + 
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  K     +A+TG++GK++    +  I  +
Sbjct: 84  IKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK 142


>gi|149194595|ref|ZP_01871691.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2]
 gi|149135339|gb|EDM23819.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2]
          Length = 469

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 128/306 (41%), Gaps = 46/306 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--SPIYLAKAL 174
           I+ +TG+ GK+S+ +FV Q+ +    +       +TI     D   + P  + IY+ +A 
Sbjct: 155 IITITGSYGKTSIKNFVYQLLKDDFKAYKTPRSVNTIKGIILDINTSLPEDTEIYITEAG 214

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +    +G     ++     L+ H       I G    +G  H++Y +T +     K+ +F
Sbjct: 215 A--RERG----DIKTIVKFLENHY-----AILGK---IGPQHLEYFKTIENIEKTKLEVF 260

Query: 235 E--ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           E   L+   S  I Y ++    ++  + HN                   + A   K +  
Sbjct: 261 ESNNLIKGFSYDIPYRENVI--KIKDKIHN-------------------IKATLEKLEWD 299

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + + G+   F   + GEF   N  +A    +   +D   + E + KL  +P R + +   
Sbjct: 300 LEINGELHHFECNILGEFNAINISLAIYQALEF-LDIETIKEKVLKLEPIPHRLQKIEV- 357

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             GG+I +D +   N +E +LK+ + I +  GR I+V     + ++     + K      
Sbjct: 358 --GGKIIIDDSFNGN-IEGMLKSFKLIKTHPGRKIIVTPGIIEGNENLNIKLAKAINKTF 414

Query: 411 DIAIVT 416
           D+AI+T
Sbjct: 415 DLAIIT 420


>gi|309783022|ref|ZP_07677741.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918130|gb|EFP63808.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
          Length = 483

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 134/317 (42%), Gaps = 58/317 (18%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA A+VVS+A         +R + P ++    ++   +  + +  +    +  +A+ GT 
Sbjct: 64  GANAVVVSTA---------VRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S V  +    GL  +F IG    ++S   + RL T   I +A+A     S+L+ 
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFI-VAEADESDASFLNL 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
             V  V     +  +D +  D        F  L +  I++ Q    Y  A + +      
Sbjct: 172 FPVIEVITNIDADHMDTYGHD--------FARLKQAFIEFTQRLPFYGIAVLCVDDPNVR 223

Query: 236 ELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           E+LP  S  ++   +A+DA  + V  RA         V  + +F  ++++   H +  ++
Sbjct: 224 EILPFVSKPVVRYGFAEDAQVRAVNARA---------VDGRMEFTVIRQLNG-HAEPPLS 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           I++          LPG   V NAL A  +   + +    +++ L + + V  RF+  G  
Sbjct: 274 ITLN---------LPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEV 324

Query: 351 -TNSRGGRIYV--DYAH 364
            T    GR  +  DY H
Sbjct: 325 PTADGKGRFTLIDDYGH 341


>gi|256545068|ref|ZP_05472435.1| tetrahydrofolate synthase [Anaerococcus vaginalis ATCC 51170]
 gi|256399271|gb|EEU12881.1| tetrahydrofolate synthase [Anaerococcus vaginalis ATCC 51170]
          Length = 428

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 30/161 (18%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP---------GRFEFVGTNSRGG 356
           L G+ Q+YNA      C AI        E     +++          GR E +   S+  
Sbjct: 252 LIGKVQIYNA------CNAINFLDYFKEEFFLDENIIKEGIFESKNSGRMELI---SKSP 302

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           ++ +D +H   S++ ++K+++     R+IV F    D+D     I+  ++    ++ I  
Sbjct: 303 KVLIDGSHNKESIDALIKSLKLFKYNRLIVGFSVLKDKDYD--YIIENLSSVADEMVITK 360

Query: 417 DDNPRSED---PEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            DNPR+ D    EKI  E    +       N I+ I+ A E
Sbjct: 361 VDNPRAFDLGELEKIVREKFANV-------NAIDNIKNAYE 394


>gi|229158075|ref|ZP_04286145.1| Folyl-polyglutamate synthetase [Bacillus cereus ATCC 4342]
 gi|228625394|gb|EEK82151.1| Folyl-polyglutamate synthetase [Bacillus cereus ATCC 4342]
          Length = 433

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 39/197 (19%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRNGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K + +      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKGNRI------EAI 449
               ++G++     +I   T    R+         I+ G +  + +K +++      EAI
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRA---------ILAGELASYSKKESKLVFENWKEAI 400

Query: 450 RTAIEMLNKQDVLVVAG 466
            T +EML + DV ++ G
Sbjct: 401 DTKVEMLGENDVFIITG 417


>gi|154494018|ref|ZP_02033338.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
 gi|154086278|gb|EDN85323.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
          Length = 453

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 112/292 (38%), Gaps = 52/292 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +TG++GK++       I +++G+ +   G    S     A+D     P  +Y+    
Sbjct: 113 MICITGSNGKTTTTMLTYHILRQAGVDAGLAGNVGNSLALQVAED-----PHAVYV---- 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRL 233
                       +E SS  LD   +   K       N+  DH+D Y+   Q Y +AK R+
Sbjct: 164 ------------IELSSFQLDN--MYDFKADIAILLNITPDHLDRYNYEMQNYVDAKFRI 209

Query: 234 FEELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  E   I + DD   ++E+ KR   A        Y     H   V      +++ 
Sbjct: 210 IRNQTA-EDAFIFWNDDPIIAREIAKRHPQATL------YPFAETHEAGVKGYTEDKKII 262

Query: 293 ISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           I      F     L  L G   +YN+L       A GI S LV  H E L       +F 
Sbjct: 263 IETSNGTFTMEEDLLALSGTHNLYNSL-------ASGIASKLVDIHDENLRASLS--DFT 313

Query: 350 GTNSRGGRIY----VDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCGGDRD 395
           G   R  ++     VDY + S +  +      ++++T+  ++++ G     D
Sbjct: 314 GVEHRLEKVARVRGVDYINDSKATNVNSCWYALQSMTTPLVLILGGTDKGND 365


>gi|83589845|ref|YP_429854.1| UDP-N-acetylmuramyl tripeptide synthase [Moorella thermoacetica
           ATCC 39073]
 gi|83572759|gb|ABC19311.1| UDP-N-acetylmuramyl tripeptide synthase [Moorella thermoacetica
           ATCC 39073]
          Length = 455

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 297 GKDFDF------LF---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           G DF+       LF   P+PG + VYN L AAG  + +G++ A ++  +     +PG+  
Sbjct: 247 GTDFNLVHPGGALFLHTPMPGIYNVYNILAAAGTALYLGVEPATIVRVVASF--LPGQGR 304

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               N R  RI +        + + L   RT+ +GR  + F
Sbjct: 305 AEAFNLRDRRITLMLVKNPTGMGVAL---RTLATGRQKMAF 342


>gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6]
 gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6]
          Length = 845

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 130/335 (38%), Gaps = 59/335 (17%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            + S DSR    G  FVA+   + DGH +IP AIA GA  I+ S       +     + T
Sbjct: 24  TDWSYDSRLTAPGECFVALRTPRADGHDYIPAAIAAGATGILCS-------WPPADSAGT 76

Query: 91  PILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            +L+ D+ +  L  +AS RL    P  ++ +TG+ GK++       +  R   ++FQ   
Sbjct: 77  TVLLCDDPQTTLLRWASARLAAVQP-TVVDITGSVGKTTARRAAAAVLARR-AATFQ--- 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-----DGIKL 204
                     +R +  S + L  A++ L  Q    V    S H  +  RL       I L
Sbjct: 132 ----------SRRSFNSFLGLPIAIARLEDQHRFAVLELGSDHRGEIARLATFFPPKIAL 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHN 262
           +    T +   H+    + +A    K  L   L PK   AII  D   ++ +M R  AH 
Sbjct: 182 V----TAVEAAHLRSFGSLEAIAAEKGDLLAALPPKGV-AIINGDSPLARALMGRTKAHT 236

Query: 263 ------AGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                   C    R L  G  G  + L+                G + D   PL G   +
Sbjct: 237 ITYGQGRSCDLSGRGLRYGLDGTLLRLRWC--------------GTEVDVHTPLIGIPGL 282

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           Y AL    + +A G+D    +  L  +  V GR  
Sbjct: 283 YAALAGVAVGLACGMDLVDCVAALPHIVPVAGRLR 317


>gi|270263960|ref|ZP_06192228.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
 gi|270042153|gb|EFA15249.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
          Length = 491

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 132/348 (37%), Gaps = 74/348 (21%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+        L   R +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRFR-HG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  + V  I   +GL  +F  G    + +     RL + S   +A+A     S+L  Q +
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAEADESDASFLHLQPM 188

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +     +  +D ++        G F NL          +Q + N     F   LP   
Sbjct: 189 VAIVTNIEADHMDTYQ--------GDFENL----------KQTFIN-----FLHNLPFYG 225

Query: 243 PAIIYADDAYSKEVMKR----------AHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQ 289
            A++  DD   +E++ R          + +A  R+ S   VG QG F       +  +K 
Sbjct: 226 RAVMCVDDPVVRELLPRVGRHITTYGFSEDADVRIESYRQVGPQGHF-----TLSRQDKP 280

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +T+++           PG     NA  A  +    GID   +L  L        RF+F+
Sbjct: 281 LMTVTLNA---------PGRHNALNAAAAVAVATEEGIDDEDILRALAGFQGTGRRFDFL 331

Query: 350 G------TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           G       N + G   +  DY H    +++ LK  R      R++++F
Sbjct: 332 GEFPLEPVNGKSGTAMLVDDYGHHPTEVDVTLKAARAGWPDKRLVMIF 379


>gi|226321622|ref|ZP_03797148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
 gi|226232811|gb|EEH31564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
          Length = 463

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +    S  +   + 
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  K     +A+TG++GK++    +  I  +
Sbjct: 84  IKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK 142


>gi|218249487|ref|YP_002374827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|218164675|gb|ACK74736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
          Length = 463

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +    S  +   + 
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  K     +A+TG++GK++    +  I  +
Sbjct: 84  IKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK 142


>gi|216264224|ref|ZP_03436216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215980697|gb|EEC21504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 463

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +    S  +   + 
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  K     +A+TG++GK++    +  I  +
Sbjct: 84  IKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK 142


>gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 830

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 131/343 (38%), Gaps = 46/343 (13%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----------- 76
           I+ + +DSR +      +F A+   +  G  +IP+   +G    V++             
Sbjct: 8   IDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELK 67

Query: 77  --YSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              S QD  A    N+ +     L+V N  K L   A     K    ++ +TG++GK+ V
Sbjct: 68  MEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIV 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             ++ Q+          + P   I  S  + ++++  P  ++    LS  +  G+    +
Sbjct: 128 KEWLHQL----------LSPDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGI 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246
                     R+  IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +I
Sbjct: 175 SEMGEMGALKRM--IKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKDCDVVI 226

Query: 247 YADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           Y  D    S  V K    A     S     + +++ +V    +   ++      D  F  
Sbjct: 227 YNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCI 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           P   +  + N L     C+ +   +  + E + +L  +  R E
Sbjct: 287 PFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLE 329


>gi|56459543|ref|YP_154824.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178553|gb|AAV81275.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 467

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ VS+D+R      +F+A+ G   D H F+ QAIA+GA AI+             + S 
Sbjct: 24  IDAVSTDTRADLTDALFIALKGKNFDAHDFVEQAIAKGAAAIICEK---------KVDSE 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
              ++V+N+R  L    + +  K     +AVTG++GK++V   +  I
Sbjct: 75  CRQIIVENSRHALGRLGAAIKAKVAPKTVAVTGSNGKTTVKEMLAAI 121


>gi|329888140|ref|ZP_08266738.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
 gi|328846696|gb|EGF96258.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
          Length = 481

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G   V NAL A  +   IG+D   +   L     V  RF   G  + G R+  DY 
Sbjct: 289 LPMAGWHNVSNALAAIAVAREIGVDDDAIRTGLAGFGGVKRRFTTTGV-AHGVRVIDDYG 347

Query: 364 HTSNSLEMILKNIRTI-----TSGRIIVV 387
           H    +  +LK  R +      +GR+I V
Sbjct: 348 HHPVEIAAVLKAARQVVQNADNTGRVIAV 376


>gi|301155887|emb|CBW15356.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus parainfluenzae
           T3T1]
          Length = 475

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 130/344 (37%), Gaps = 67/344 (19%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAV 120
           QGA  +VVSSA         I  + P L+     +        + A  +  +H    +AV
Sbjct: 76  QGASVVVVSSA---------IHEDNPELIAAKQNRIPVIQRAQMLAEIMRFRHG---IAV 123

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176
            GT GK++  + +  I  ++ L    +     +   A  N     S   +A+A     S+
Sbjct: 124 AGTHGKTTTTAMISMIYTQAKLDPTFV--NGGLVKSAGKNAHLGASRYLIAEADESDASF 181

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +  V                        TN+  DH+D ++       A    F  
Sbjct: 182 LHLQPMVSV-----------------------VTNIEPDHMDTYEGDFEKMKATYVKFLH 218

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV----- 291
            LP    A++ ADDA   E++ +    G +VL+ G+     +      I + +Q      
Sbjct: 219 NLPFYGLAVMCADDAVLMELVPQV---GRQVLTYGFSEHADY-----RIEDYEQTGFQGH 270

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--- 346
              +   G+  + L  +PG+    NA  A  +    GI +  +LE L        RF   
Sbjct: 271 YTVVCPSGERINVLLNVPGKHNALNATAALAVAKEEGIGNEAILEALADFQGAGRRFDQL 330

Query: 347 -EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            EF+  N +  R+  DY H    +++ +K  R      RI+++F
Sbjct: 331 GEFIRPNGK-VRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIF 373


>gi|160871628|ref|ZP_02061760.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
 gi|159120427|gb|EDP45765.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
          Length = 471

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 135/341 (39%), Gaps = 64/341 (18%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A+ IV SSA S  +       +  I VV        +   R         +AV GT G
Sbjct: 71  RDADVIVYSSAVSCDNVEIQAARHALIPVVPRALMLAEIMRFRYS-------IAVAGTHG 123

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    GL  +F IG    ++S     RL +           YL ++    
Sbjct: 124 KTTTTSLVASLLGEGGLDPTFVIG--GKLNSTRTHARLGSGR---------YLVAE---- 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLP 239
            + E+ +  L       +K +    TN+ RDH+     ++ Q ++++       F   LP
Sbjct: 169 -ADESDASFL------YLKPMIAIVTNIDRDHMGTYSGNFQQLKKSFLE-----FLWHLP 216

Query: 240 KESPAIIYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               A++  DD + + ++            + +A  R+ S  +Q K         I N  
Sbjct: 217 FYGLAVLCCDDPFIRSILPDIMRPILTYGFSEDADIRITS--FQQK--------EIKNYF 266

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +V +  + K  D +  LPGE    NAL A  +   +GI + ++ + L     V  RF+ +
Sbjct: 267 RV-LRPKKKPMDIILNLPGEHNALNALAAIAVASELGIKNDVICKALSHFSGVDRRFQVL 325

Query: 350 G--TNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVV 387
           G  T   G  + + DY H    +   LK IR     R +V+
Sbjct: 326 GKLTCKHGDALLIDDYGHHPREIAATLKAIRHAWPDRRLVM 366


>gi|15594649|ref|NP_212438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
 gi|3915785|sp|Q44777|MURF_BORBU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2688162|gb|AAC66644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
          Length = 464

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +    S  +     
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHE---- 80

Query: 83  SATIR-----SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S  I+          L+  N  K L   AS L  K     +A+TG++GK++    +  I 
Sbjct: 81  SECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSIL 140

Query: 138 QR 139
            +
Sbjct: 141 SK 142


>gi|222097903|ref|YP_002531960.1| folylpolyglutamate synthase [Bacillus cereus Q1]
 gi|221241961|gb|ACM14671.1| folylpolyglutamate synthase [Bacillus cereus Q1]
          Length = 407

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + + I  + ++E       L+
Sbjct: 210 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKIYLSFLIEEEEIRTGLQ 269

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K + +      +IV+F   GD+  
Sbjct: 270 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQL 325

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+    ++ +          +  N  EAI T +EML
Sbjct: 326 --HNMVGQLESIADEIIFTTFAFDRAISAGELASYAKEESKLVFD--NWKEAIDTKVEML 381

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 382 GENDVFIITG 391


>gi|328947389|ref|YP_004364726.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           succinifaciens DSM 2489]
 gi|328447713|gb|AEB13429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           succinifaciens DSM 2489]
          Length = 531

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 27/155 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+AVTG+ GKSS  S +     ++G   F +G   T+S                   LS+
Sbjct: 129 IIAVTGSKGKSSTVSALSYGLNQAGFKCF-LGGNITVS------------------PLSF 169

Query: 177 LS-SQGVTHVSVEASSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMR 232
           L  + G T V +E SS  L   R  G KL+       T +  DH +++    +Y   K  
Sbjct: 170 LEKTDGTTPVVLELSSWQLADLR--GRKLLKPKISIITKIVPDHQNWYGDMDSYVEDKKL 227

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +F +    +   + + +D Y KE    +   GCR 
Sbjct: 228 IFADQDKNDFTILDFDEDNYLKETA--SPKRGCRC 260


>gi|311086530|gb|ADP66611.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 129/329 (39%), Gaps = 55/329 (16%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  + I+ SSA S   ++  A  + N PIL+     + L  F   +         A++GT
Sbjct: 45  KNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKGI---------AISGT 95

Query: 124 SGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            GK++  S +  I   SGL    I  G   +I+S+A+                  L S  
Sbjct: 96  HGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAK------------------LGSS- 136

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            ++   EA         L+   +I    TN+  DHID++            +F + +   
Sbjct: 137 -SYFITEADESDASFLYLNPNIIIV---TNIESDHIDHYDNSFKKLKQTFLIFLKKITLY 192

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISVE 296
             AI+  D+    +++    N  C++++ G+        F++ +     H      I   
Sbjct: 193 GTAIVCIDNNAICDILT---NLKCKIITYGFNKNADVRIFLYKQNNFIGH---FYIILKN 246

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV------- 349
            K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF+       
Sbjct: 247 NKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQ 306

Query: 350 GTNSRGGRIYV-DYAHTSNSLEMILKNIR 377
           G + R   + + DY H    L   +K IR
Sbjct: 307 GFDKRANCMLIDDYGHHPTELSETIKTIR 335


>gi|312114843|ref|YP_004012439.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219972|gb|ADP71340.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 477

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 109/290 (37%), Gaps = 53/290 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTG+ GK++  S +  + +++GL      PT  +                       L
Sbjct: 110 ICVTGSHGKTTTTSMIGWVMEKAGLD-----PTVLVGGV--------------------L 144

Query: 178 SSQGVTHVSVEASSHGL---DQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMR 232
            S G T+  + AS   +   D+     IKL    G  TN+  +H+DY+ + +A   A  R
Sbjct: 145 RSWG-TNARIGASRWMVVEADESDATFIKLPTEIGVATNIDPEHLDYYGSVEALHEA-FR 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMK---------------RAHNAGCRVLSVGYQGKFI 277
            F   +P+   A+   D    +E+ +               RA +A  ++ +V  QG  +
Sbjct: 203 TFLRQIPQTGVAVAGIDHPVVRELTQELAASGELPPLTSFGRALDARVKIDNVVSQGASV 262

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               V A    +        +       +PG     NA  A   C+  G+ +  + + L 
Sbjct: 263 MFDVVIAGKPGEPPL-----RHTGVKLQVPGAHNALNAAAAIAACLHAGLSADQIFDGLA 317

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               V  RF   G    G  IY DYAH    +  +L   R    GR+I V
Sbjct: 318 SFEGVDRRFSPRG-EWNGVAIYDDYAHHPAEIAAVLSAARGAARGRVIAV 366


>gi|225850024|ref|YP_002730258.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
 gi|225646530|gb|ACO04716.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
          Length = 440

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 22 PMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
          P++ R+  ++I     DSR  Q    FV + G+K DGH FI  A+ +G+   + S
Sbjct: 14 PLKLRDADKEIKRFIIDSRKAQKDSFFVPLKGSKADGHDFIDDALKKGSSGYLTS 68


>gi|221217708|ref|ZP_03589176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223889004|ref|ZP_03623595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224533118|ref|ZP_03673718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224533787|ref|ZP_03674375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225550109|ref|ZP_03771069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|221192385|gb|EEE18604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223885820|gb|EEF56919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224511845|gb|EEF82246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224513080|gb|EEF83443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225369221|gb|EEG98674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|312149582|gb|ADQ29653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi N40]
          Length = 463

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +    S  +     
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHE---- 80

Query: 83  SATIR-----SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S  I+          L+  N  K L   AS L  K     +A+TG++GK++    +  I 
Sbjct: 81  SECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSIL 140

Query: 138 QR 139
            +
Sbjct: 141 SK 142


>gi|28871542|ref|NP_794161.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966566|ref|ZP_03394717.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|302059793|ref|ZP_07251334.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato K40]
 gi|302131740|ref|ZP_07257730.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999568|sp|Q87WY6|MURC_PSESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28854793|gb|AAO57856.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928416|gb|EEB61960.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|331016735|gb|EGH96791.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 486

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 126/324 (38%), Gaps = 52/324 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEEL 237
           +  V     +        D +    G F  L +  +++      Y  A M     +  ++
Sbjct: 185 LVAVVTNIDA--------DHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVRDI 236

Query: 238 LP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LP  + P + Y    +S++   RA N    V   G    F  L++     +++ + +SV 
Sbjct: 237 LPLVKRPTMTY---GFSEDSDVRAIN----VRQDGMLTFFTVLRR-----DREPLDVSVN 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRG 355
                    +PG   V N+L    +    G+    +++ L     V  RF+  G     G
Sbjct: 285 ---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEG 335

Query: 356 GRIYV--DYAHTSNSLEMILKNIR 377
           G + +  DY H    +  ++  +R
Sbjct: 336 GHVMLVDDYGHHPREVAAVISAVR 359


>gi|120554475|ref|YP_958826.1| FolC bifunctional protein [Marinobacter aquaeolei VT8]
 gi|120324324|gb|ABM18639.1| FolC bifunctional protein [Marinobacter aquaeolei VT8]
          Length = 438

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 17/142 (11%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLP +     A+++  L   + ++S   L+H  +   VPGRFE +  +     + +D  H
Sbjct: 261 PLPVQSVAAAAVLSRQLVPELSLES---LQHAIQNVRVPGRFETIHHDPD---VIIDVGH 314

Query: 365 TSNSLEMILKNIRTIT---SGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVTDDNP 420
             ++   +  N+R +     GRI+ V+G  GD+D +G   ++G ++  +    +   D P
Sbjct: 315 NPHAAAWLADNLRRLRCGGPGRILAVYGALGDKDVEG---VVGAMSSVVDQWYLAGLDVP 371

Query: 421 RSEDPEKIRAEI----IHGIPG 438
           R  D + +   I    + G PG
Sbjct: 372 RGLDSDSLMKRISTVALQGKPG 393


>gi|23009655|ref|ZP_00050624.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 252

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 26/240 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I   S D+R ++ G +F AI G   DGH F+  A+ +   A     A S  D  A   
Sbjct: 25  RAIRGASIDTRSLEPGDLFFAIRGEARDGHDFVQAALDK--GAGAAVVAASRADDCA--- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              P+L V    +   L A R  G     +    I+AVTG+ GK+     ++ +    G 
Sbjct: 80  GAGPVLAVPEGGEDPVLDAMRRLGLAARARSRAAIVAVTGSVGKTGTKEALRHVLSAQGA 139

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG- 201
           +       ++++S+  +N      P+ LA+ +   +  GV  + +   +HG +   L   
Sbjct: 140 TH------ASVASY--NNHWGV--PLTLAR-MPEAAQFGVFEIGM---NHGAEILPLTAM 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T +   HI++ ++  A  +AK  +F  L P    A+I  D+A  + ++  A 
Sbjct: 186 VRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPG-GVAVINRDNANFERLLAHAQ 244


>gi|294674970|ref|YP_003575586.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
 gi|294473470|gb|ADE82859.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
          Length = 443

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 128/314 (40%), Gaps = 41/314 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   +  G    I +         P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKEAG---YDAGLAGNIGNSLALQVAEDPHEYYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y+   Q Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYDFRADIAILLNITPDHLDRYNFEMQNYVDAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K++  I +ADD   K  +++       + S+ Y   F  LK+   I   ++    +
Sbjct: 203 NQTDKDA-FIYWADDPIIKRELEKYD-----IHSIQY--PFSELKEKGVIGYIEEGKYKI 254

Query: 296 EGKD-FDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           E  + F+       L G+  +YN+L A       GI    + + L     V  R E V T
Sbjct: 255 EKPEPFNMEQESLSLTGKHNIYNSLAAGIAADIAGIKKEEIRKSLSDFPGVEHRLEKVCT 314

Query: 352 NSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             RG +   D   T+ ++    L+ ++T    ++I++ G G D+     PI   +    +
Sbjct: 315 -VRGVQYINDSKATNVDACWYALEAMKT----KVILIIG-GKDKGNDYEPIKPLVKEKCS 368

Query: 411 DIAIVTDDNPRSED 424
            I  +  DN +  D
Sbjct: 369 GIVYLGADNQKLHD 382


>gi|294340070|emb|CAZ88438.1| Dihydroxy-acid dehydratase (DAD) [Thiomonas sp. 3As]
          Length = 613

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 15/109 (13%)

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I +D  + + H   L+ +P R + +  +      Y+  AHT+++L + + N   IT G +
Sbjct: 77  IAVDDGIAMGHDGMLYSLPSR-DIIADSVE----YMCNAHTADAL-VCISNCDKITPGML 130

Query: 385 I--------VVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED 424
           +        VVF  GG  + GK  + GK I+LDL D  +   D+  S+D
Sbjct: 131 MAALRLNIPVVFVSGGPMEAGKTRLAGKVISLDLIDAMVAAADDKVSDD 179


>gi|294142636|ref|YP_003558614.1| dihydroxy-acid dehydratase [Shewanella violacea DSS12]
 gi|293329105|dbj|BAJ03836.1| dihydroxy-acid dehydratase [Shewanella violacea DSS12]
          Length = 616

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I +D  + + H   L+ +P R E +  +      Y+  AH +++L + + N   IT G +
Sbjct: 77  IAVDDGIAMGHGGMLYSLPSR-ELIADSVE----YMVNAHCADAL-VCISNCDKITPGMM 130

Query: 385 I--------VVFGCGGDRDQGKRPIMGK-IALDLADIAIV-TDDNPRSEDPEKI 428
           +        V+F  GG  + GK  + G  I LDL D  +   DD    ED EKI
Sbjct: 131 MAALRLNIPVIFVSGGPMEAGKTKLSGNIIKLDLVDAMVAGADDRVSDEDSEKI 184


>gi|289434885|ref|YP_003464757.1| hypothetical protein lse_1520 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171129|emb|CBH27671.1| murC [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 103/277 (37%), Gaps = 46/277 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +          I PTS                 YL    +  
Sbjct: 104 IAITGSHGKTSTTGLLSHVVG-------AIRPTS-----------------YLIGDGTGS 139

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G  + ++EA  +   Q      K      TN+  DH DY ++    FNA    FE L
Sbjct: 140 GTKGADYFALEACEY---QRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+     A   +V  R       ++  G+ G+    +    I         V  
Sbjct: 193 GKQVKKAVF----ALGDDVELRKLTLDIPIIYFGF-GEENEFQAKNVIKETTGTRFDVYH 247

Query: 298 KDFDFL--FPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +D +FL  F +P  G+  V NAL    LC   G+    V   L+    V  RF       
Sbjct: 248 RD-EFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVKRRFSI---TD 303

Query: 354 RGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
           +G ++ V DYAH  + +   +   R      +I+ VF
Sbjct: 304 KGKQVLVDDYAHHPSEIRATVNAARQKYPDKKIVAVF 340


>gi|206976041|ref|ZP_03236951.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus H3081.97]
 gi|217961946|ref|YP_002340516.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH187]
 gi|229141195|ref|ZP_04269734.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST26]
 gi|206745793|gb|EDZ57190.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus H3081.97]
 gi|217067672|gb|ACJ81922.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH187]
 gi|228642236|gb|EEK98528.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST26]
          Length = 433

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + + I  + ++E       L+
Sbjct: 236 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKIYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K + +      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+    ++ +          +  N  EAI T +EML
Sbjct: 352 --HNMVGQLESIADEIIFTTFAFDRAISAGELASYAKEESKLVFD--NWKEAIDTKVEML 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 GENDVFIITG 417


>gi|134294643|ref|YP_001118378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
 gi|134137800|gb|ABO53543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
          Length = 468

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 147/386 (38%), Gaps = 58/386 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR    G +FVA+ G + D H F+          +    A +            P+
Sbjct: 29  VSTDSRTAGPGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHVPAGLAMPV 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +    TR  L   A     +    ++AVTG++GK++V   +  I       +  +G  + 
Sbjct: 81  VEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASIF------AAAVGADAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNLNNDIGVPLTLLRLSAAHRLAVIELGMNH---PGETDVLARLAAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R+L 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALAP-DGVAVFPADDAYAG--IWRVAATGNRILD 244

Query: 270 VGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFP---------LPGEFQVYNA 315
                         A+H+ Q     QVT  + G +     P           GE    NA
Sbjct: 245 F-------------ALHDAQRQVGAQVTGRLHGGELAIDTPSGALTVRLRALGEHNARNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEM 371
           L A    +A G++ A +   LE    V GR +       S  G   VD  + +N  S+  
Sbjct: 292 LAATAAALAAGVELAAIGRGLEAFEPVKGRLQVRRADVGSLAGATVVDDTYNANPDSMRA 351

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG 397
            +  +    + R++V+   G   D+G
Sbjct: 352 AIDVLAAQAAPRVLVIGDMGEVGDEG 377


>gi|303233989|ref|ZP_07320638.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
 gi|302494914|gb|EFL54671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
          Length = 441

 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 138/354 (38%), Gaps = 40/354 (11%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G+   AI  N ++    I   +    E+I     Y +   S  IR + P+++  N     
Sbjct: 24  GYDLGAIDDNIDEEKTKILNELDVRIESIDTIDKYDIILKSPGIRMDNPVILKANELNIE 83

Query: 103 SL----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            +     A R++G     I+A+TGT+GK++  S + ++   SG  +  IG          
Sbjct: 84  VVSDLELAQRIFGDIK--IVAITGTNGKTTTTSLMTKMLNDSGRKAISIG---------- 131

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                    I +       +S   T+  +E SS  L+  +    K       N+  DHID
Sbjct: 132 --------NIGVGMLWEIYNSDKDTYFVIECSSFQLESTK--HFKPQYSCIINITPDHID 181

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGK 275
           +H + + Y NAK  + +    +    ++ ADD Y +E  K+   A    +S      +G 
Sbjct: 182 WHGSMKNYVNAKKNVLKN-QDENCYTVLNADDEYYEEC-KKFTKANIYDISTSKNIERGS 239

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           FI  K      +       ++ KD      L G     N L    L   IGI+   + E 
Sbjct: 240 FI--KDNSIYFSDSYCDKIIDLKD----VKLIGYHNYQNVLFCVTLAKLIGINDDSIRET 293

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           L     V  R EFV   S G + Y D   T  +++  +K I +     II+  G
Sbjct: 294 LMSFSGVEHRLEFVRDLS-GVKYYNDSKGT--NVDASVKAIESFDKNVIILAGG 344


>gi|296136097|ref|YP_003643339.1| dihydroxy-acid dehydratase [Thiomonas intermedia K12]
 gi|295796219|gb|ADG31009.1| dihydroxy-acid dehydratase [Thiomonas intermedia K12]
          Length = 613

 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 15/109 (13%)

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I +D  + + H   L+ +P R + +  +      Y+  AHT+++L + + N   IT G +
Sbjct: 77  IAVDDGIAMGHDGMLYSLPSR-DIIADSVE----YMCNAHTADAL-VCISNCDKITPGML 130

Query: 385 I--------VVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED 424
           +        VVF  GG  + GK  + GK I+LDL D  +   D+  S+D
Sbjct: 131 MAALRLNIPVVFVSGGPMEAGKTRLAGKVISLDLIDAMVAAADDKVSDD 179


>gi|149275985|ref|ZP_01882130.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter sp. BAL39]
 gi|149233413|gb|EDM38787.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter sp. BAL39]
          Length = 451

 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 45/268 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL--SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +AV GT GK++ +S +  +   +G   ++F  G  S  +S    N L   + + + +A  
Sbjct: 116 IAVAGTHGKTTTSSIIAHVLTDTGFGCTAFLGGIASNYNS----NFLLGNNDVVVVEADE 171

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y  S    H  +                      T++  DH+D +        +   LF 
Sbjct: 172 YDRSFLTLHPDIAV-------------------VTSMDADHLDIYGDASQLVES-FGLFA 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L KE    + A     + +   A + G R++    +           +   + V   V
Sbjct: 212 GQLKKEGTLYVKAGLPLQQGISYSAVDEG-RLMGTNIR-----------VEGARFVFDYV 259

Query: 296 EGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +G DF   D    +PG   V NA+ A  + + +GI+  LV + +     V  RFE++   
Sbjct: 260 DG-DFSIADLQLMVPGRHNVENAVAAIAVALRLGIEPELVKKAIGNFKGVKRRFEYIVNT 318

Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIRTI 379
           S    +Y+ DYAH    L+     IR +
Sbjct: 319 SE--YVYIDDYAHHPEELKACFGAIRQL 344


>gi|15616833|ref|NP_240045.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681586|ref|YP_002467972.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471272|ref|ZP_05635271.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133466|sp|P57310|MURC_BUCAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765987|sp|B8D913|MURC_BUCA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293621|pir||C84955 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) [imported] -
           Buchnera sp. (strain APS)
 gi|10038896|dbj|BAB12931.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219624429|gb|ACL30584.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 484

 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 129/329 (39%), Gaps = 55/329 (16%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  + I+ SSA S   ++  A  + N PIL+     + L  F   +         AV+GT
Sbjct: 76  KNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKGI---------AVSGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            GK++  S +  I   SGL    I  G   +I+S+A+                  L S  
Sbjct: 127 HGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAK------------------LGSS- 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            ++   EA         L+   +I    TN+  DHID++            +F + +   
Sbjct: 168 -SYFITEADESDASFLYLNPNIIIV---TNIEPDHIDHYDNSFKKLKQTFLIFLKKITLY 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISVE 296
             AI+  D+    +++    N  C++++ G+        F++ +     H      I   
Sbjct: 224 GTAIVCIDNNAICDILT---NLKCKIITYGFNKNADVRIFLYKQNNFIGH---FYIILKN 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV------- 349
            K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF+       
Sbjct: 278 NKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMIASLKNFQGTCRRFEFLGFLSIDQ 337

Query: 350 GTNSRGGRIYV-DYAHTSNSLEMILKNIR 377
           G + R   + + DY H    L   +K IR
Sbjct: 338 GFDKRANCMLIDDYGHHPTELSETIKTIR 366


>gi|313203975|ref|YP_004042632.1| udp-N-acetylmuramoylalanine--d-glutamate ligase [Paludibacter
           propionicigenes WB4]
 gi|312443291|gb|ADQ79647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paludibacter
           propionicigenes WB4]
          Length = 444

 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 115/307 (37%), Gaps = 65/307 (21%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA R Y K    ++ +TG++GK++    V  I + +GL   ++G    +           
Sbjct: 95  FAGR-YTK--AKMICITGSNGKTTTTMLVYHILKNAGL---KVGLAGNVGQ--------- 139

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQ 223
                 + AL  +++    +  VE SS  LD   +   K       N+  DH+D Y    
Sbjct: 140 ------SLALQ-VATDTFDYYVVELSSFQLDG--MTEFKADIAILLNITPDHLDRYEYNF 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           Q Y ++K R+ +    ++S      D     E+ KR      ++ S  Y       ++  
Sbjct: 191 QNYVDSKFRITQNQTEEDSFIFWENDPVIKAELAKR------KIQSTMYPFSIERSERTK 244

Query: 284 AIHNKQQVTISVEGKDFDFLFPLP-------GEFQVYNALVAAGLCIAI-GIDSALVLEH 335
           A   + ++ I    K    LF +P       G    YN++ AAGL  +I  +    + + 
Sbjct: 245 AFIEQDELII----KTLKTLFTMPTTDLALQGMHNTYNSM-AAGLAASIVNVRKESIRQS 299

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L+    V  R E+V T                     +KNIR +   +   V  C     
Sbjct: 300 LQDFQGVEHRLEYVAT---------------------VKNIRFVNDSKATNVNSCWYALQ 338

Query: 396 QGKRPIM 402
             K P++
Sbjct: 339 SMKTPVV 345


>gi|86132608|ref|ZP_01051201.1| UDP-N-acetylmuramate-alanine ligase [Dokdonia donghaensis MED134]
 gi|85816850|gb|EAQ38035.1| UDP-N-acetylmuramate-alanine ligase [Dokdonia donghaensis MED134]
          Length = 450

 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 12/116 (10%)

Query: 284 AIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVL 333
           A ++ Q V I      FDF +P          LPG   ++NA  A  + +A G   A + 
Sbjct: 238 ATYSTQNVRIVDGAYHFDFKYPDGVLKDLKVTLPGRHNLFNATTALSMAVAYGTPVAKLP 297

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
           E L     V  RF +    S+   +  DYAH    +  + ++I+ +  G  ++ +F
Sbjct: 298 EALASYAGVNRRFTY-RYESQDKVLIDDYAHHPTEIAAVYQSIKEMYPGEEVLAIF 352


>gi|320333170|ref|YP_004169881.1| FolC bifunctional protein [Deinococcus maricopensis DSM 21211]
 gi|319754459|gb|ADV66216.1| FolC bifunctional protein [Deinococcus maricopensis DSM 21211]
          Length = 414

 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           V PGR E +    R   + +D AH  +    + + + T+  GR+ VVFG   D+D     
Sbjct: 275 VWPGRLERLTWGER--EVLLDGAHNPDGARALRRALATLGVGRVPVVFGATADKDVAG-- 330

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDP 425
           + G+IA   +++ +     +PR+  P
Sbjct: 331 VAGEIAAFASEVVLTRAVLSPRAAPP 356


>gi|229523208|ref|ZP_04412615.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           TM 11079-80]
 gi|229339571|gb|EEO04586.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           TM 11079-80]
          Length = 421

 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL+A G C  + I    +++ L    +  GR + +   S    I +D A
Sbjct: 254 LPLP---NAATALMALG-CSGLAISDINIVDGLRNAQLA-GRMQVI---SHQPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  +S   +++ +      R I +VFG   D+D     +  +++  +      +   PR+
Sbjct: 306 HNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKDIASTVV--ELSPAVTHWYPASLSGPRA 363

Query: 423 EDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                  A++   +P  I +  N + A   A+     QDV+VVAG  H    ++ + +K+
Sbjct: 364 ----ATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDVIVVAGSFHTVGEVLEHWQKR 419


>gi|240949193|ref|ZP_04753537.1| folylpolyglutamate synthase/dihydrofolate synthase [Actinobacillus
           minor NM305]
 gi|240296309|gb|EER46953.1| folylpolyglutamate synthase/dihydrofolate synthase [Actinobacillus
           minor NM305]
          Length = 431

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 71/399 (17%), Positives = 145/399 (36%), Gaps = 63/399 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST----------------------IS 154
           ++ V GT+GK S   F++    ++GL+   +G  S+                      I 
Sbjct: 51  VITVAGTNGKGSTCRFLEVALLKAGLT---VGVYSSPHLIRYNERVRINGDVLADQFHIQ 107

Query: 155 SFAQDNRLTTPSPIYLA----KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AG 207
           SFA  N   T S  Y       AL    +  +  V +E    G    RLD   ++     
Sbjct: 108 SFADINEKKTASLTYFEFSTLSALQLFKNAKLDVVILEVGLGG----RLDATNIVDPHLA 163

Query: 208 SFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             T++  DH+ +    ++     K  +F E +P     ++  +      ++  A    C 
Sbjct: 164 VITSIDIDHVAFLGDNREDIGREKAGIFREHIP-----VVIGEPDCPNSILTHAKQLQCH 218

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V+       +    +  +     Q  + +       L P+P         +A    +   
Sbjct: 219 VMQRDVDWHYFVKAESFSWKALDQQFVDLPMP----LIPIPNA----GTAIATLTQLPFN 270

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRG--------GRIYVDYAHTSNSLEMILKNIRT 378
           I   ++ E L +  +  GRF+ + T+            ++ +D  H  ++   + + ++ 
Sbjct: 271 ISEQVIRETLSEAQMT-GRFQTLTTSDFAQFSGIIPKAKVIIDVGHNPHAARYLAERLQA 329

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +  G+I  +F C  D++     I+  +   + +   V  D  R +  E +  +++  +P 
Sbjct: 330 VKKGKIFAIFSCLEDKELSG--IVEPLDNLIDEWFCVGLDCWRGQRGEAVLEKLVKSLPN 387

Query: 439 FIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                  N  +A   A     +QD+++V G  H    +V
Sbjct: 388 ATACAYENIAQATPIAFNQAKEQDIVLVFGSFHTVADLV 426


>gi|149181751|ref|ZP_01860243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148850599|gb|EDL64757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 165

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  + +  + +Q G +F  I G++ D H    +A+  GA A+V      L         +
Sbjct: 24  IANLKNHHKKVQNGDLFFCIKGSEVDSHTLAKEAVLSGAAAVVSERELEL---------D 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            P+++V ++R+ +++ A   Y K P   L +
Sbjct: 75  VPVIIVKDSRRAMAVLADYFY-KQPTKQLKL 104


>gi|229184422|ref|ZP_04311629.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228599218|gb|EEK56831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
          Length = 124

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I+ V  DS++I+ G +FV I+  K DGH ++ +++  GA A +   +Y       T   
Sbjct: 32  EIHGVRIDSKNIKEGNVFVPIIRVK-DGHEYVKESMDNGAVASLWKKSY------GTPPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             PI+ VD+T   L   A     +    ++ +TG+  K
Sbjct: 85  GVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSMAK 122


>gi|260171780|ref|ZP_05758192.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. D2]
 gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 846

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 131/343 (38%), Gaps = 46/343 (13%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----------- 76
           I+ + +DSR +      +F A+   +  G  +IP+   +G    V++             
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELK 83

Query: 77  --YSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              S QD  A    N+ +     L+V N  K L   A     K    ++ +TG++GK+ V
Sbjct: 84  MEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIV 143

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             ++ Q+          + P   I  S  + ++++  P  ++    LS  +  G+    +
Sbjct: 144 KEWLHQL----------LSPDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGI 190

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246
                     R+  IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +I
Sbjct: 191 SEMGEMGALKRM--IKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKDCDVVI 242

Query: 247 YADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           Y  D    S  V K    A     S     + +++ +V    +   ++      D  F  
Sbjct: 243 YNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCI 302

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           P   +  + N L     C+ +   +  + E + +L  +  R E
Sbjct: 303 PFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLE 345


>gi|237729386|ref|ZP_04559867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
 gi|226909115|gb|EEH95033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
          Length = 438

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      ++ +A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDDERELYV-LELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  +      A  R +S G      HL +
Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGINMGDYHLNR 242


>gi|237654083|ref|YP_002890397.1| UDP-N-acetylmuramate--L-alanine ligase [Thauera sp. MZ1T]
 gi|237625330|gb|ACR02020.1| UDP-N-acetylmuramate/alanine ligase [Thauera sp. MZ1T]
          Length = 471

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 114/289 (39%), Gaps = 60/289 (20%)

Query: 83  SATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S  ++++ P +V    R         + A  +  KH    +A+ GT GK++  S V  I 
Sbjct: 71  STAVKADNPEVVAARERHIPVVPRAQMLAELMRFKHG---IAIAGTHGKTTTTSLVASIL 127

Query: 138 QRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G+  +F IG    +++   + RL T           YL ++     + E+ +  L  
Sbjct: 128 AEGGIDPTFVIG--GRLNAAGANARLGTG---------DYLVAE-----ADESDASFLL- 170

Query: 197 HRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                +  +    TN+  DH+     D+ + +QA+ +     F   LP    A++  DD 
Sbjct: 171 -----LNPVISVVTNIDADHMDTYGHDFGRVKQAFVD-----FLHRLPFYGVAVLCEDDP 220

Query: 252 YSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             +E++ +          +  A  R  +V  +G  +     C   N     +S+E     
Sbjct: 221 NVREIIPQVAKQIVRYGFSETANIRAENVRAEGGRMRFD--CVRVNGTTSRLSIE----- 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               LPG   V NAL A  +   + +  A +++ L + + V  RF+  G
Sbjct: 274 --LNLPGLHNVLNALAAIAVATEVQVPDAAIVKALAEFNGVGRRFQRYG 320


>gi|85373184|ref|YP_457246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
 gi|84786267|gb|ABC62449.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
          Length = 459

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 21/133 (15%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA       P  ++ +TGT+GKS+  + V  + + +G+ + ++G    +    ++  
Sbjct: 96  IELFAQARSALPPHRVIGITGTNGKSTTTALVTHLLKEAGVEA-RMGGNIGLPILGEE-- 152

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
              P P            +G  +V +E SS+ +D  R   +   A +  N+  DH+D + 
Sbjct: 153 ---PLP------------EGGVYV-LELSSYQIDLTR--SLACEAAALLNITPDHLDRYD 194

Query: 222 TQQAYFNAKMRLF 234
             ++Y  +K RLF
Sbjct: 195 GFESYAFSKGRLF 207


>gi|304392258|ref|ZP_07374200.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
 gi|303296487|gb|EFL90845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
          Length = 463

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 29/174 (16%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           RS  PI  V +   F    A       P  ++A+TGT+GKS+  + +  + +++G    Q
Sbjct: 91  RSEVPI--VGDVELFFRQMAK---AGRPAPVIAITGTNGKSTTTALIAHVLKQAG-RDVQ 144

Query: 147 IGPTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +    D    TP+  +Y+                VE SS+ +D      I   
Sbjct: 145 MGGNIGRAVLDLDPLSETPANQVYV----------------VEISSYQID--LAPSIAPH 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G   NL  DH++ H T + Y   K    E L+     A++  DD + + +  R
Sbjct: 187 VGLLLNLTPDHLERHGTLENYAGIK----ERLVAASDLAVVGLDDEHCRAISGR 236


>gi|282866568|ref|ZP_06275611.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
 gi|282558615|gb|EFB64174.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
          Length = 464

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 10/222 (4%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNA-GCRVLSVG-YQG 274
           H    A  +     FE    K  P    ++ AD   + E+ +R     G +V++ G  +G
Sbjct: 190 HHANYASMDEIYESFETFTGKVVPGGTLVVSADQQGAVELTRRVRGQDGLQVVTYGEAEG 249

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
             + + K+       +VT+ + GK   F   +PG     NA+ A    +A+G+ +  +  
Sbjct: 250 ADVRVHKITPRGLTSEVTVVLGGKYLTFTVSVPGRHYALNAVAALAAGVALGVPAHNLAS 309

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCG-G 392
            +     V  R +  G  + G ++   YAH    +   L+ +R   +G R++VVF     
Sbjct: 310 AIGTYTGVKRRLQLKG-EAAGVQVIDSYAHHPTEMAADLEAMRGAAAGSRLLVVFQPHLF 368

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433
            R Q     MG+ AL LAD ++V D  P  EDP   I +E+I
Sbjct: 369 SRTQELGTEMGQ-ALALADASLVLDIYPAREDPIPGITSELI 409


>gi|299821556|ref|ZP_07053444.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
 gi|299817221|gb|EFI84457.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
          Length = 455

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 15/186 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   H+DYH  +  Y  AK ++ ++    +   +I  D    K + K+         +
Sbjct: 188 TNIYEAHLDYHADRDEYVQAKWKI-QKNQTADDILVINWDQEELKTLTKKTKAQIVPFST 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               G   +++    + N + V     G+  D L  LPG+  + N L +  +   IG+ +
Sbjct: 247 TQKLGLGSYVQNGKLMFNDEIV-----GERADIL--LPGDHNLENILASIAVAKTIGVSN 299

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +++ L+    VP R +FV T   G + Y D   T+     IL     +   +  VV  
Sbjct: 300 EQIMQVLKTFKGVPHRTQFV-TEWHGRKFYNDSKATN-----ILATQSALKGFKEPVVLL 353

Query: 390 CGG-DR 394
            GG DR
Sbjct: 354 AGGLDR 359


>gi|288574849|ref|ZP_06393206.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570590|gb|EFC92147.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 453

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 111/274 (40%), Gaps = 56/274 (20%)

Query: 131 SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S +  + + SGL +  +G   S +  FA + R      +++ +  S+             
Sbjct: 123 SLIAHLLEVSGLDALALGNIGSPLGDFAGERR-----DVFVIELSSF------------- 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             H  ++   D I +I    TN+  DHID+H + + Y +AK +           AI +  
Sbjct: 165 QLHWTEKSEFD-ISVI----TNIAPDHIDWHGSYENYISAKKK-----------AISHRR 208

Query: 250 DAYSKEVMKRAHN-----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           D     V ++  +     +  R + +  +     LKK     N ++    +EG   D   
Sbjct: 209 DTGWSIVQEKDRSLLGGQSDPRTIGLTLEN---DLKKDGIFINNERAIAVIEGVRHDLFM 265

Query: 305 ----PLPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               PL G   + NA +AA  CI   +  ID ++    L      P R +F+    + G 
Sbjct: 266 SKQVPLLGGHNIENAAMAATACILSSSRKIDWSM---GLASYQAPPHRCQFI--VEKDGI 320

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
            YVD +  +N +      +R+I  G+++++ G G
Sbjct: 321 SYVDDSKGTN-VASTCTALRSIPGGKVVILGGKG 353


>gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565]
 gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565]
          Length = 852

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 116/299 (38%), Gaps = 30/299 (10%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           E+G L I  A+       +++S  S  +F +T+      L+V N  K L   A     + 
Sbjct: 78  ENGELRIESAMQDDDAQPILNSQLSTLNFPSTLN----FLIVPNPLKALQKLAEVHRERF 133

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLA 171
              ++ +TG++GK+ V  ++ Q+          + P   I  S  + ++++  P  ++  
Sbjct: 134 NIPVIGITGSNGKTIVKEWLHQL----------LSPDRCIVRSPRSYNSQIGVPLSVW-- 181

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS  +  G+    +          R+  IK   G  TN+G  H      Q+ +F+ + 
Sbjct: 182 -QLSEEAELGIFEAGISEMGEMGALKRM--IKPSIGILTNIGGAH------QENFFSLQE 232

Query: 232 RLFEEL-LPKESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +  E+L L K+   +IY  D    S  V K    A     S     + +++  V    + 
Sbjct: 233 KCMEKLTLFKDCDVVIYDGDNELISNCVAKSMLTAREIAWSRTDIERPLYISCVTKKEDH 292

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +       D  F  P   +  + N L     C+ +   +  + E + +L  +  R E
Sbjct: 293 TVIAYRYLNMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLE 351


>gi|16330305|ref|NP_441033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechocystis
           sp. PCC 6803]
 gi|3122410|sp|P73668|MURD_SYNY3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|1652794|dbj|BAA17713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechocystis sp.
           PCC 6803]
          Length = 452

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 41/230 (17%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S VQ I Q++GL++   G                    Y A  L  L +Q    +  E S
Sbjct: 122 SLVQAIFQKAGLNAPACGNIG-----------------YAACEL-VLQNQNYDWIVAEIS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ ++       ++  G +T    DH+  H+T + YFN K      LL + +  ++  DD
Sbjct: 164 SYQIESSPTLAPQI--GLWTTFTPDHLSRHKTLENYFNIKA----SLLSRSAIQVLNGDD 217

Query: 251 ----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFD-- 301
               ++   +  +AH           QG   HL  +C        Q   ++  G+     
Sbjct: 218 PHLHSHGPNLYPQAH-------WTSTQGAN-HLAGLCDPKQGVYLQDNWVNAFGELIAPI 269

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            LF +PG+    N L+A       GID   + E L     VP R E + T
Sbjct: 270 NLFKMPGQHNQQNLLMAIAAARLAGIDKKAITETLLTFTGVPHRLEPICT 319


>gi|315633818|ref|ZP_07889107.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
 gi|315477068|gb|EFU67811.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
          Length = 476

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 139/343 (40%), Gaps = 67/343 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           GA  +V+SSA         IR + P +V     +        + A  +  +H    +AV 
Sbjct: 77  GASVVVISSA---------IRDDNPEVVAAKEARIPVIQRAQMLAELMRFRHG---IAVA 124

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  + V  I   +GL      PT       +    +  +  +L ++  YL ++ 
Sbjct: 125 GTHGKTTTTAMVSMIYAEAGLD-----PTFVNGGLVK----SAGTNAHLGRS-RYLIAE- 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YH----QTQQAYFNAKMRLFEE 236
               + E+ +  L  H    I ++    TN+  DH+D YH    + +Q Y N     F  
Sbjct: 174 ----ADESDASFL--HLQPMISIV----TNIEPDHMDTYHGDFDEMKQTYVN-----FLH 218

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV----- 291
            LP    A++ ADDA   ++M      G +V++ G+     +      I + QQ      
Sbjct: 219 NLPFYGLAVLCADDA---DLMSLVPQVGRQVITYGFSENADY-----RIEDYQQTGFQGH 270

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              I   G+  D L  +PG     NA  A  +    GI +  +L  L        RF+ +
Sbjct: 271 YTVICPSGERIDVLLNVPGRHNALNATAALAVAKEEGIKNEAILAALADFQGAGRRFDQL 330

Query: 350 GTNSR-GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           G   R  G++ +  DY H    + + ++  R    + RI+++F
Sbjct: 331 GQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIF 373


>gi|292493269|ref|YP_003528708.1| dihydroxy-acid dehydratase [Nitrosococcus halophilus Nc4]
 gi|291581864|gb|ADE16321.1| dihydroxy-acid dehydratase [Nitrosococcus halophilus Nc4]
          Length = 623

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 15/108 (13%)

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I +D  + + H   L+ +P R E +  +      Y+  AH +++L + + N   IT G +
Sbjct: 77  IAVDDGIAMGHSGMLYSLPSR-EIIADSVE----YMVNAHCADAL-VCISNCDKITPGML 130

Query: 385 I--------VVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRSE 423
           +        VVF  GG  + GK  I GK ++LDL D  +   D   SE
Sbjct: 131 MAALRLNIPVVFVSGGPMEAGKAKIHGKNLSLDLVDAMVAAADPSESE 178


>gi|226328330|ref|ZP_03803848.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
 gi|225203063|gb|EEG85417.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
          Length = 436

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 50/292 (17%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA    A+ I+ S   +L   +    +N  + +V +    + LF      K P  I+A+T
Sbjct: 60  QAWLNDADLIISSPGIALSTPALVEAANHGVEIVGD----IELFCRE--AKAP--IVAIT 111

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GKS+V + V ++    G+   ++G    I   A    LT P  +Y+           
Sbjct: 112 GSNGKSTVTTLVGEMASADGI---RVGVGGNIGVPAL-TLLTEPHDLYV----------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPK 240
                +E SS  L+      +K  A +  N+  DH++ Y    + Y  AK+R+++     
Sbjct: 157 -----LELSSFQLETTY--SLKAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDN---- 205

Query: 241 ESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEG 297
            + A +Y  DDA +  +  + +   C    VG QG +   ++ ++  +  ++ ++ +   
Sbjct: 206 -AKACVYNEDDALTLPLAGKDNR--CVSFGVG-QGDYQLDNINRILKVKGEKVLSTAE-- 259

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   L G+    NAL A  L  A+GI     +E L+  H +  RF+ V
Sbjct: 260 ------MYLSGQHNYTNALAALALADAVGISRKATIEVLKTYHGLAHRFQLV 305


>gi|221232233|ref|YP_002511386.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae ATCC
           700669]
 gi|254766025|sp|B8ZLC2|MURC_STRPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|220674694|emb|CAR69267.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae ATCC
           700669]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFSGVKRRF 302


>gi|195577143|ref|XP_002078432.1| GD23432 [Drosophila simulans]
 gi|194190441|gb|EDX04017.1| GD23432 [Drosophila simulans]
          Length = 341

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            ++A WIF A++   +DG+  IP       E++V+   +  +D+++ +      ++VD  
Sbjct: 215 RVKANWIFSAMLDESDDGNYIIPN-----TESVVLGGTHQERDYNSKVCQKDRGMIVDGC 269

Query: 99  RKFL 102
           R+++
Sbjct: 270 RRYI 273


>gi|148378126|ref|YP_001252667.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932484|ref|YP_001382527.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935877|ref|YP_001386079.1| cyanophycin synthetase [Clostridium botulinum A str. Hall]
 gi|148287610|emb|CAL81675.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152928528|gb|ABS34028.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152931791|gb|ABS37290.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A
           str. Hall]
          Length = 873

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 142/359 (39%), Gaps = 51/359 (14%)

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  ++G T+T   +  +  +          A + L+++      +E +  GL +  L  
Sbjct: 501 FSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEAEVAVLELARGGLIRDGLPY 560

Query: 202 IKLIAGSFTNLGRDHIDYHQTQ----QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                G  TN+  DH+           AY  A   L  E + K+   +I ADD  S  ++
Sbjct: 561 DLADVGIITNVTEDHLGLGGINTLEDMAYVKA---LVGEAIKKDGYVVINADDEASISII 617

Query: 258 KR--------AHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDF 300
            R          N    ++S     K          I+LKK+    NK +  I+V     
Sbjct: 618 NRMKSKIILFTKNKNNPIISQYLDNKNLVLYLDEDTIYLKKL----NKNEEIINVN---- 669

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355
                L G+  + V NA+ A    IA+GID   + + LE        PGRF     N  G
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGIDVNTIRQGLESFSNEEQNPGRFNMY--NVHG 727

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   +
Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKIKHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYVYI 787

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464
            +D  +        A+++    G +E G          +  EA++ AIE  N  D++++
Sbjct: 788 KEDRDKRGRKHGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844


>gi|94498175|ref|ZP_01304736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
 gi|94422305|gb|EAT07345.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
          Length = 443

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 29/194 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSN---TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G + IVVS    L      +R+     PI+        + LFA       P  ++ +TGT
Sbjct: 64  GFDGIVVSPGVPLNRHPINMRAKLAGVPII------GDIELFALARPTLPPHKVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +  I +++G  +  +G    +   +Q      P    L  A  Y+      
Sbjct: 118 NGKSTTTALIHHIIEQAGYPTV-MGGNIGLPILSQ-----PPLEPNLKGAGVYV------ 165

Query: 184 HVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              +E SS+ +D  H LD    +     N+  DH+D +   + Y  +K RLF  +     
Sbjct: 166 ---LELSSYQIDLTHSLDCDVAV---LLNITPDHLDRYDGFEGYVASKARLF-AMQSAGH 218

Query: 243 PAIIYADDAYSKEV 256
            A+I  +D  S+ V
Sbjct: 219 KAVIATEDEPSRSV 232


>gi|90416334|ref|ZP_01224266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
 gi|90332059|gb|EAS47273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
          Length = 450

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 32/169 (18%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSG 125
           G + +VVS   SL++         P LV    +K   L    L+ +H +  ++ +TG++G
Sbjct: 70  GFDTVVVSPGISLEE---------PALVAAQQQKVKLLGDVELFLEHAKAPVVLITGSNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V   V ++ Q SGL   ++G             L TP        L  L  +   +V
Sbjct: 121 KSTVTKLVGEMAQASGL---KVG---------VGGNLGTP-------MLDLLDDENQLYV 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            +E SS  L+   +   +    +  N+  DH+D +   Q Y  AK R+F
Sbjct: 162 -IELSSFQLE--LVTDTRGAISAILNISPDHMDRYADLQQYHAAKHRIF 207


>gi|313608536|gb|EFR84427.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes FSL
           F2-208]
          Length = 380

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 60/284 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +          I PTS                 YL    +  
Sbjct: 37  IAITGSHGKTSTTGLLSHVVG-------AIRPTS-----------------YLIGDGTGS 72

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G  + ++EA  +   Q      K      TN+  DH DY ++    FNA    FE L
Sbjct: 73  GTKGAEYFALEACEY---QRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 125

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             +   A+    DDA   E+ K + +        G + +F            + V     
Sbjct: 126 GKQVKKAVFALGDDA---ELRKLSLDIPIIYFGFGEENEF----------QAKNVIKETT 172

Query: 297 GKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           G  FD          F  P  G+  V NAL    LC   G+    V + L+    V  RF
Sbjct: 173 GTKFDVYHRGEFLGSFEIPAYGDHNVLNALSVIALCDYEGLPVEDVKKELKTFEGVKRRF 232

Query: 347 EFVGTNSRGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
                  +  ++ V DYAH  + +   +   R      +++ VF
Sbjct: 233 SIT---EKANQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVF 273


>gi|229490346|ref|ZP_04384187.1| UDP-N-acetylmuramate--alanine ligase [Rhodococcus erythropolis
           SK121]
 gi|229322636|gb|EEN88416.1| UDP-N-acetylmuramate--alanine ligase [Rhodococcus erythropolis
           SK121]
          Length = 502

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 97/256 (37%), Gaps = 48/256 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAG-- 264
           TN+  DH+DY  + +AY    +++F++ + K  P    I   DD  S ++ KR   +G  
Sbjct: 187 TNIEADHLDYFGSVEAY----VKVFDDFVDKLRPGGLLIACLDDPGSADLAKRIVVSGRS 242

Query: 265 -CRVLS----------------------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             RVL                       VG +    H   V  +    Q  ++ E     
Sbjct: 243 DIRVLGYGSADAQEVEAGTAFEPVDGVEVGVRLLGFHAHDVGGV---LQFHLAGESAART 299

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG     NAL A       G ++  ++E L     V  RF+F G   RG R++ D
Sbjct: 300 VRMAVPGRHMALNALAALLAARDAGAETEEIVEGLAGFGGVHRRFQFTG-RERGVRVFDD 358

Query: 362 YAHTSNSLEMILKNIRTI------------TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           YAH    +  +L     +             +GR+IVVF                 ALDL
Sbjct: 359 YAHHPTEVRAVLGAAADLVRPEDDSSSTNSAAGRVIVVFQPHLYSRTAAFAEEFAQALDL 418

Query: 410 ADIAIVTDDNPRSEDP 425
           AD  +V D     E+P
Sbjct: 419 ADEVVVLDVYGAREEP 434


>gi|313891497|ref|ZP_07825110.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
 gi|313120074|gb|EFR43253.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
          Length = 463

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 39/244 (15%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D++ T +   NA ++   +        I+  D+   K ++ +          
Sbjct: 180 TNIEDDHLDHYLTVENIKNAFIKFINQTDKINGNTILCIDNEGVKSILPKLDKNSYITYG 239

Query: 260 -AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            + NA  + ++     ++I    +  +++K+    +V          +PG   V NAL A
Sbjct: 240 TSDNAEYKAIN----KRYIDSHMMFDVYHKESFLGTVS-------LMIPGTHNVRNALAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  GID   + + L + + V  RF+     S   +I  DYAH    +   LK  + 
Sbjct: 289 LVTGLICGIDFKTIAKSLMEFNGVKRRFQI--KYSGEVKIVDDYAHHPTEIMSTLKAAKE 346

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
               R+I    C     +  R  + K     A D ADI  +TD     E P       ++
Sbjct: 347 CGKHRVI----CAFQPHRYSRTNLLKYEFANAFDNADIIFITDIYSAGEKP-------VN 395

Query: 435 GIPG 438
           GI G
Sbjct: 396 GISG 399


>gi|293378750|ref|ZP_06624908.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
 gi|292642678|gb|EFF60830.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
          Length = 496

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 135/330 (40%), Gaps = 33/330 (10%)

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           TP  +V+++RKFL   +++L       ++A+TG++GK+S    +  + Q           
Sbjct: 95  TPQFIVEDSRKFLLELSAKLRSCFVNPVVAITGSAGKTSTRMMITHLLQE---------- 144

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
              +     ++ +    P+Y++K LS         +++E S + L+ +    +  LI   
Sbjct: 145 -EKVLENRGNHNVRFAVPLYMSKLLS-----NPDVLNLEVSVNALNSYDTGSMSNLIQQD 198

Query: 209 F---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEV-MKRAH 261
               T++G  H+   +  +     K ++FE  L ++  AII  D   + +S  V      
Sbjct: 199 IAIVTSIGEAHLSSLKNTKGVAVHKAKIFEG-LKQDGIAIINGDIGKEEFSILVSAAEKR 257

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            +   V S+    + + +K++       +V +S  G+D      +  E  + N+L A  +
Sbjct: 258 TSKIVVYSLHDASRDVFVKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIV 317

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +  + +  ++  E    +P   E     S  G  +     T N+    +KN      
Sbjct: 318 AKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFD 377

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           G  I  F  G      K  I+G+IA DL D
Sbjct: 378 G--IQPFYKG-----NKVLILGQIA-DLGD 399


>gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
 gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
          Length = 498

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 157/388 (40%), Gaps = 40/388 (10%)

Query: 20  IFPMQWR------ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           + P++ R       R    VS D+R +  G +F AI G   DGH ++  A+ +GA A VV
Sbjct: 31  VAPLEARISGGAPRRGATGVSIDTRTLCPGDLFFAISGFNSDGHDYVAAALEKGALAAVV 90

Query: 74  SSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             A+     + ++    P+ VV D+    L         +    I AVTG+ GK+S    
Sbjct: 91  DEAH-----AESLARLGPLYVVRDDVLAALERLGVAARARTRARIAAVTGSVGKTSTKEA 145

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++     +G +       ++++S+  +N      P+ LA+ +   +  GV  + +     
Sbjct: 146 LRLALSAAGRTH------ASVASY--NNHWGV--PLTLAR-MPRQTEFGVFEIGMNHQGE 194

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA- 251
                R+  ++      T +   H++     +A  +AK  +F  L P    AI+ AD+  
Sbjct: 195 ITPLTRM--VRPHVAIITTVAPVHMENFTGVEAIADAKAEIFAGLEPG-GVAILPADNPQ 251

Query: 252 YSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           + +       +A   V S G     + + + + ++ A H+  +  I   G+   +    P
Sbjct: 252 FERLAAAAKRSAAGLVTSFGADKHAEARLLDV-RLAADHSMVEADIC--GQLLTYRLGAP 308

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTS 366
           G     N+L       A+G+D     + L      PGR + +   +  G    +D ++ +
Sbjct: 309 GRHLAMNSLAVLLAAKALGVDPREAAQTLASFAAQPGRGQRLELQAPDGAFTLIDESYNA 368

Query: 367 NSLEM-----ILKNIRTITSGRIIVVFG 389
           N   M     +   +   + GR + V G
Sbjct: 369 NPASMRAAFDLAGALAPPSPGRRVAVLG 396


>gi|148556850|ref|YP_001264432.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
 gi|148502040|gb|ABQ70294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
          Length = 495

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 109/260 (41%), Gaps = 44/260 (16%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA          ++ +TGT+GKS+  + +  I + +G+ +  +G    +    +D  
Sbjct: 137 IELFAQARASLPAHKVVGITGTNGKSTTTALIAHILETAGVPTL-MGGNIGLPILGRDP- 194

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYH 220
                          L + GV    +E SS+ +D    LD    +    TN+  DH+D +
Sbjct: 195 ---------------LPAGGV--YVLELSSYQIDITQSLDCDVAV---LTNITPDHLDRY 234

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGK- 275
                Y  +K+RLF   +  +  ++I  DD  S E++    N      S+ +    QG+ 
Sbjct: 235 DGFAGYAASKLRLFT--MQGKGISVIAGDDEPSVEIINALRNRPIHPASLSWATTEQGEQ 292

Query: 276 -----FIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDS 329
                 + + +V  +     ++ S++G++    +P L G     NA +A   C  +G+  
Sbjct: 293 RPVISRVEMGRVMRV-----MSSSLQGQEN---WPALQGPHNAQNAALAIETCRLLGLSY 344

Query: 330 ALVLEHLEKLHVVPGRFEFV 349
           + + + L     +P R + V
Sbjct: 345 SQIDQGLRSYPGLPHRMQRV 364


>gi|188026236|ref|ZP_02961393.2| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
 gi|188022175|gb|EDU60215.1| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
          Length = 472

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 128/350 (36%), Gaps = 74/350 (21%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A  +VVS+A S  +          I V+        L   R +G      +AV GT G
Sbjct: 62  EDASVVVVSTAISADNPEIQAAHELRIPVIRRAEMLAELMRYR-HG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I  ++GL                        P ++   L  + S G TH 
Sbjct: 115 KTTTTAMISGIYAQAGL-----------------------DPTFVNGGL--VKSAG-THA 148

Query: 186 SVEASSHGL---DQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            + +S + +   D+     + L  +    TN+  DH+D +Q            F   LP 
Sbjct: 149 RLGSSRYLIAEADESDASFLHLQPLVAVVTNIEADHMDTYQGNFETLKDTFINFLHNLPF 208

Query: 241 ESPAIIYADDAYSKEVMKR----------AHNAGCRVLSV---GYQGKFIHLKKVCAIHN 287
              A++  DD   + ++ R          + +A  R++     G QG F       A  N
Sbjct: 209 YGRAVMCIDDPVIRSLLPRVSRYVTTYGFSEDADVRIVKYEQKGNQGFF-----TIAREN 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             ++T+ +           PG     NA  A  +    GID   +L  L +      RF+
Sbjct: 264 MPELTVVLNA---------PGRHNALNATAAVAVATEEGIDDQHILSALVEFQGTGRRFD 314

Query: 348 FVGT------NSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           F+G       N + G + +  DY H    ++  +K  R      RI++VF
Sbjct: 315 FLGNYSLRHVNGKEGEVMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVF 364


>gi|169834096|ref|YP_001694928.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|229620426|sp|B1ICU3|MURC_STRPI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168996598|gb|ACA37210.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFSGVKRRF 302


>gi|148988565|ref|ZP_01819998.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP6-BS73]
 gi|168493422|ref|ZP_02717565.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC3059-06]
 gi|225854964|ref|YP_002736476.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           JJA]
 gi|254766026|sp|C1CFA5|MURC_STRZJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147925766|gb|EDK76841.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP6-BS73]
 gi|183576266|gb|EDT96794.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC3059-06]
 gi|225723347|gb|ACO19200.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae JJA]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFSGVKRRF 302


>gi|297170220|gb|ADI21258.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 385

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 45/231 (19%), Positives = 92/231 (39%), Gaps = 33/231 (14%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++Q+  F     +  I  +  DSR  + G +F+ + G   D  +++ + + +GA  I   
Sbjct: 13  LSQILGFENVQTDANIERIVFDSRIARKGDLFIPLKGKNYDAEIYVEEVLKKGASVITKQ 72

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             +            + I+V D     L + A++L  K+   ++ +TG+ GK+++   ++
Sbjct: 73  KIFG-----------SSIVVDDVYSSLLDICANKLI-KNKGKVIFITGSYGKTTIKDMLK 120

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHG 193
            +          +G     S   ++N    P  I  + K   YL         VE  +  
Sbjct: 121 SL----------LGDKCHASKDNENNEFGIPFTILSMPKNTEYL--------VVECGARN 162

Query: 194 LDQHRLDGIKLIAGSF--TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +    L   KL    F  T +  +H+   +  +     K++L E L  K++
Sbjct: 163 IGDFDLISEKLYCDVFILTAIASNHLSTFKNIENISKTKLKLKECLKDKDN 213


>gi|306824891|ref|ZP_07458235.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304433102|gb|EFM36074.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 12/182 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITANAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +        +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEDNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIV 386
           D  LV EHL+    V  RF     N  G  I  D+AH    +   L   R    S  I+ 
Sbjct: 284 DLNLVREHLKTFAGVKRRFTEKVVN--GTIIIDDFAHHPTEIIATLDAARQKYPSKEIVA 341

Query: 387 VF 388
           +F
Sbjct: 342 IF 343


>gi|229525614|ref|ZP_04415019.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           bv. albensis VL426]
 gi|229339195|gb|EEO04212.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           bv. albensis VL426]
          Length = 421

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL+A G C  + I    +++ L    +  GR + +   S    I +D A
Sbjct: 254 LPLP---NAATALMALG-CSGLAISDINIVDGLRNAQLA-GRMQVI---SHQPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  +S   +++ +      R I +VFG   D+D     +  +++  +      +   PR+
Sbjct: 306 HNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKDIASTVV--ELSPAVTHWYPASLSGPRA 363

Query: 423 EDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                  A++   +P  I +  N + A   A+     QDV+VVAG  H    ++ + +K+
Sbjct: 364 ----ATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDVIVVAGSFHTVGEVLEHWQKR 419


>gi|226328326|ref|ZP_03803844.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
 gi|225203059|gb|EEG85413.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
          Length = 487

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 143/387 (36%), Gaps = 65/387 (16%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ I +GA  +VVS+A S ++          I V+        L   R +G      +A+
Sbjct: 73  PENI-RGASVVVVSTAISAENPEIIAAREARIPVIRRAEMLAELMRYR-HG------VAI 124

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++  + +  I  ++GL                        P ++   L  + S 
Sbjct: 125 AGTHGKTTTTAMISNIYAQAGL-----------------------DPTFVNGGL--VKSA 159

Query: 181 GVTHVSVEASSHGL---DQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           G TH  +  S + +   D+     + L  +    TN+  DH+D +             F 
Sbjct: 160 G-THARLGCSRYLIAEADESDASFLHLQPMVAVVTNIEADHMDTYHGNFDNLKETFITFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----- 290
             LP    A++  DD   + ++ +    G  + + G+         V   H +Q+     
Sbjct: 219 HNLPFYGRAVMCLDDDVIRSIIPK---VGRYITTYGFSED----ADVRITHYEQKGAQGF 271

Query: 291 VTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            TIS EG  D   +   PG     NA  A  +    GI    +L  L        RF+F+
Sbjct: 272 FTISREGMPDLQVVLNAPGRHNALNATAAVAVATEEGIADEHILAALLSFQGTGRRFDFL 331

Query: 350 GT------NSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRP 400
           G       N + G + +  DY H    ++  +K  R      R++++F     R    R 
Sbjct: 332 GNYGLEHVNGQEGEVMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQP--HRYTRTRD 389

Query: 401 IMGKIA--LDLADIAIVTDDNPRSEDP 425
           +    A  L+  DI ++TD     E P
Sbjct: 390 LYEDFATVLNQVDILLLTDVYSAGEAP 416


>gi|213622394|ref|ZP_03375177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 227

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 27/141 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I                   AL  
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L +    +V +E SS  L+      ++  A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LDADRELYV-LELSSFQLETT--SSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEV 256
               K    ++ ADDA +  V
Sbjct: 205 ----KAKVCVVNADDALTMPV 221


>gi|194017884|ref|ZP_03056493.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
 gi|194010536|gb|EDW20109.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
          Length = 432

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 131/377 (34%), Gaps = 94/377 (24%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            ER I  +  D  +IQ G   +A  GN   D H  I +A+++G   I             
Sbjct: 44  EERNIKILPFDPDNIQPGMTVIA--GNAFPDTHPEIERALSEGIPVI------------- 88

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                          KFL  +            +A+TG  GK+S    +  + Q +  +S
Sbjct: 89  ------------RYHKFLGEYMDTFTN------VAITGAHGKTSTTGLLAHVMQSAKPTS 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           + IG  S +    ++N     S  ++ +A  Y               H L  H    I  
Sbjct: 131 YLIGDGSGM---GKEN-----SEYFVFEACEY-------------RRHFLSYHPDYAI-- 167

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263
                TN+  DH DY       F+A    F+ +  +   AII   DD +  ++      A
Sbjct: 168 ----MTNIDFDHPDYFSDIDDVFDA----FQNMALQVKKAIIACGDDEHLPKI-----QA 214

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVY 313
              V+  G+  +             + V  + EG  FD          F  P  G   V 
Sbjct: 215 KVPVVYYGFNEE--------NDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAYGNHNVL 266

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMI 372
           N+L    LC    ID  L+   L     V  RF        G ++ + DYAH    +E+ 
Sbjct: 267 NSLAVIALCHYEAIDVELIKGALTTFGGVKRRF---NEKVVGEQVLIDDYAHHPTEIEVT 323

Query: 373 LKNIRTITSGR-IIVVF 388
           ++  R     R I+ VF
Sbjct: 324 IEAARQKYPDREIVAVF 340


>gi|293604150|ref|ZP_06686558.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
 gi|292817375|gb|EFF76448.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
          Length = 856

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 79/404 (19%), Positives = 149/404 (36%), Gaps = 68/404 (16%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +++A    G+ P  ++AV GT+GK++       +    G +  ++G T++   +  + R+
Sbjct: 460 NMYADGDDGRIP--VVAVAGTNGKTTTVRLTAHLL---GAAGNRVGMTNSDGVYIDNLRI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDY-- 219
            T        A S L    V     E +  G+ +  L   +      TN+G  DH+    
Sbjct: 515 DTGDCSGPRSARSVLMHPDVDAAVFETARGGILREGLAFDRCNVAIVTNIGMGDHLGLGY 574

Query: 220 ------------------HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                             H +  A  NA   +  E+      +I Y  +  +  V+    
Sbjct: 575 ISTVEDLAVVKRVIVQHVHPSGTAVLNAADPIVAEMAASCPGSITYFAEDRNHPVLATHR 634

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG---------EFQV 312
             G R                 +++      ++ +G + +  FPL            FQV
Sbjct: 635 AQGLR-----------------SVYRDGDAIVAAQGAE-EIRFPLADIPLTRNGTITFQV 676

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            NA+ +     A+ +D  +V   L          PGRF     + RG  +  DY H  ++
Sbjct: 677 ENAMASIAAAWALNLDWEVVRRGLATFVNDAQTAPGRFNVF--DYRGATVIADYGHNPDA 734

Query: 369 LEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  +++ +  + +  R +V+ G G  RD+  R     +     D+ +  D   R     +
Sbjct: 735 ILALVRAVDAMPAKRRSVVISGAGDRRDEDIRMQTEILGAAFDDVLLYQDQCQRGRADGE 794

Query: 428 IRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVV 464
           + A +  G+ G   +   IE       AI TA+  L   D+ ++
Sbjct: 795 VLALLQEGLVG-APRTQHIEEIHGEFLAIDTALARLQAGDLCLI 837


>gi|15641016|ref|NP_230647.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121587337|ref|ZP_01677108.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           2740-80]
 gi|153819839|ref|ZP_01972506.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           NCTC 8457]
 gi|153829527|ref|ZP_01982194.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           623-39]
 gi|227081175|ref|YP_002809726.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           M66-2]
 gi|229505400|ref|ZP_04394910.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           BX 330286]
 gi|229510930|ref|ZP_04400409.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           B33]
 gi|229518051|ref|ZP_04407495.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           RC9]
 gi|229529905|ref|ZP_04419295.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           12129(1)]
 gi|229608419|ref|YP_002879067.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           MJ-1236]
 gi|254226231|ref|ZP_04919825.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           V51]
 gi|254291875|ref|ZP_04962658.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           AM-19226]
 gi|254848131|ref|ZP_05237481.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MO10]
 gi|255744783|ref|ZP_05418734.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholera
           CIRS 101]
 gi|262151272|ref|ZP_06028408.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           INDRE 91/1]
 gi|298498885|ref|ZP_07008692.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MAK 757]
 gi|9655464|gb|AAF94162.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121548420|gb|EAX58480.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           2740-80]
 gi|125621267|gb|EAZ49607.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           V51]
 gi|126509620|gb|EAZ72214.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           NCTC 8457]
 gi|148874987|gb|EDL73122.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           623-39]
 gi|150422235|gb|EDN14199.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           AM-19226]
 gi|227009063|gb|ACP05275.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           M66-2]
 gi|229333679|gb|EEN99165.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           12129(1)]
 gi|229344766|gb|EEO09740.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           RC9]
 gi|229350895|gb|EEO15836.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           B33]
 gi|229357623|gb|EEO22540.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           BX 330286]
 gi|229371074|gb|ACQ61497.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           MJ-1236]
 gi|254843836|gb|EET22250.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MO10]
 gi|255737814|gb|EET93208.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholera
           CIRS 101]
 gi|262030963|gb|EEY49591.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           INDRE 91/1]
 gi|297543218|gb|EFH79268.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MAK 757]
 gi|327483719|gb|AEA78126.1| Dihydrofolate synthase [Vibrio cholerae LMA3894-4]
          Length = 421

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLP       AL+A G C  + I    +++ L    +  GR + +   S    I +D A
Sbjct: 254 LPLP---NAATALMALG-CSGLAISDINIVDGLRNAQLA-GRMQVI---SHQPTIVLDVA 305

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  +S   +++ +      R I +VFG   D+D     +  +++  +      +   PR+
Sbjct: 306 HNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKDIASTVV--ELSPAVTHWYPASLSGPRA 363

Query: 423 EDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                  A++   +P  I +  N + A   A+     QDV+VVAG  H    ++ + +K+
Sbjct: 364 ----ATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDVIVVAGSFHTVGEVLEHWQKR 419


>gi|307294498|ref|ZP_07574340.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878972|gb|EFN10190.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 440

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 28/208 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G E +VVS    L      + +    + +    +  +L A     KH   ++ +TGT+G
Sbjct: 64  KGLEGVVVSPGVPLNKHPIAMHARLAGVPIIGDIELFAL-ARPALPKH--RVVGITGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  + V  I + +G+ + ++G    +    Q+     P P            +G  +V
Sbjct: 121 KSTTTALVHHIIETAGIPT-RMGGNIGLPILGQE-----PLP------------EGGVYV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS+ +D  +   +        N+  DH+D +   + Y  +K RLF E+   +  A+
Sbjct: 163 -LELSSYQIDLTQ--SLDCDVAVLLNITPDHLDRYNGFEGYVASKARLF-EMQSVDHVAV 218

Query: 246 IYADDAYSK---EVMKRAHNAGCRVLSV 270
           I  +D  S+   E ++ +   G  V+ V
Sbjct: 219 IATEDEPSRSIFENLRHSREGGNDVVEV 246


>gi|301794533|emb|CBW36975.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           INV104]
 gi|332200961|gb|EGJ15032.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA47901]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFSGVKRRF 302


>gi|300871753|ref|YP_003786626.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
 gi|300689454|gb|ADK32125.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
          Length = 460

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 155/385 (40%), Gaps = 56/385 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A++G+ GK++  S + QI   + L+     P   I      N     S  Y       L
Sbjct: 111 IAISGSHGKTTTTSLISQIMIEAKLN-----PICIIGG----NHFNLKSNAYCN-----L 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL-FEE 236
           +S+   ++  EA        RL  +  +    TN+  DH+DY+   +     K+RL F +
Sbjct: 157 NSE---YMVCEADESDGSFLRLSPVFSVV---TNIDNDHLDYYGNVE-----KLRLAFLD 205

Query: 237 LLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
            + K  P    +   +  +V+K  A +   +  S G+  ++       +I  ++ +    
Sbjct: 206 FINK-VPFYGCSFLCFENDVVKDLAKSVSKKYYSYGFSNEYDFYVDKSSIKTEEFKTYFK 264

Query: 295 VEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              KD    +F  PL GE  V N+L +  +   + ID+  + + L+    V  R   +  
Sbjct: 265 AYYKDKFLGEFELPLIGEHNVLNSLASIAVAYHLDIDTDTIKKALKTFEGVGRRLNKL-- 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGG-DRDQGKRPIMGKIALDL 409
             +   ++ DY H    ++  L ++R      RII +F      R Q          LD 
Sbjct: 323 YDKEITLFDDYGHHPTEIKATLSSLRNAYKDRRIIAIFQPHRYSRTQLLLNDFENAFLD- 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRT------AIEMLNKQ 459
           AD  I+TD     E P       I GI G     I K N I+ I+        +E + K 
Sbjct: 382 ADNLIITDIYAAGESP-------IAGISGETICKIVKNNNIKYIKNIEDILPELEKIKKD 434

Query: 460 -DVLVVAGKGHETVHIVTNGEKKMS 483
            D+++  G G+  V +  +  KK+S
Sbjct: 435 GDIIITLGAGN-IVKVSNDYAKKLS 458


>gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
          Length = 846

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 131/343 (38%), Gaps = 46/343 (13%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----------- 76
           I+ + +DSR +      +F A+   +  G  +IP+   +G    V++             
Sbjct: 24  IDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELK 83

Query: 77  --YSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              S QD  A    N+ +     L+V N  K L   A     K    ++ +TG++GK+ V
Sbjct: 84  MEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIV 143

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             ++ Q+          + P   I  S  + ++++  P  ++    LS  +  G+    +
Sbjct: 144 KEWLHQL----------LSPDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGI 190

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246
                     R+  IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +I
Sbjct: 191 SEMGEMGALKRM--IKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKDCDVVI 242

Query: 247 YADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           Y  D    S  V K    A     S     + +++ +V    +   ++      D  F  
Sbjct: 243 YNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCI 302

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           P   +  + N L     C+ +   +  + E + +L  +  R E
Sbjct: 303 PFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLE 345


>gi|238060680|ref|ZP_04605389.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
 gi|237882491|gb|EEP71319.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
          Length = 484

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G +     P P    +++A  A    +A+G+D A V   +     V  RFE +  ++R G
Sbjct: 276 GTETRLTLPTPATHHLHDAAAAVACAVALGLDPADVTAAVGTFAGVRRRFEHI--DTRAG 333

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVF 388
              +D YA   N +   L+  RT+  GR+ VVF
Sbjct: 334 VTVIDSYASHPNEIAADLQAARTLARGRVFVVF 366


>gi|229846170|ref|ZP_04466282.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
 gi|229811174|gb|EEP46891.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
          Length = 475

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 131/350 (37%), Gaps = 79/350 (22%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAV 120
           +GA  +VVSSA         I+ + P LV    ++        + A  +  +H    +AV
Sbjct: 76  EGASVVVVSSA---------IKDDNPELVASKQKRIPVIQRAQMLAEIMRFRHG---IAV 123

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176
            GT GK++  + +  I  ++ L    +     +   A  N     S   +A+A     S+
Sbjct: 124 AGTHGKTTTTAMISMIYTQAKLDPTFV--NGGLVKSAGKNAHLGASRYLIAEADESDASF 181

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +  V                        TN+  DH+D ++       A    F  
Sbjct: 182 LHLQPMVSV-----------------------VTNMEPDHMDTYEGDFEKMKATYVKFLH 218

Query: 237 LLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLS---VGYQGKFIHLKKVC 283
            LP    A++ ADD    E++ +          +  A  R+      G+QG   H   +C
Sbjct: 219 NLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQG---HYTVIC 275

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N +++ I         L  +PG+    NA  A  +    GI +  +LE L       
Sbjct: 276 P--NNERINI---------LLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAG 324

Query: 344 GRF----EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            RF    EF+  N +  R+  DY H    +++ +K  R      RI+++F
Sbjct: 325 RRFDQLGEFIRPNGK-VRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIF 373


>gi|225866438|ref|YP_002751816.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus 03BB102]
 gi|225790168|gb|ACO30385.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus 03BB102]
          Length = 433

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S  G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K +++      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVKSHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+    ++ +          E  N  EAI T IEM+
Sbjct: 352 --HNMVGQLETIANEIIFTTFAFDRAISAGELASYAKKESKLVFE--NWKEAIDTKIEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 GENDVFIITG 417


>gi|24111536|ref|NP_706046.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           301]
 gi|30061658|ref|NP_835829.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|44888197|sp|Q83MF8|MURC_SHIFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24050295|gb|AAN41753.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30039900|gb|AAP15634.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|281599453|gb|ADA72437.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2002017]
 gi|313646526|gb|EFS10987.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|332762290|gb|EGJ92557.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2747-71]
 gi|332764937|gb|EGJ95165.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-671]
 gi|333022321|gb|EGK41559.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-304]
          Length = 491

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMCVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|332768881|gb|EGJ99060.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2930-71]
          Length = 476

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 178 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 237

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 238 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMCVTLNA---------PGRHNALNAA 283

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 284 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 343

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 344 VDATIKAAR 352


>gi|289640743|ref|ZP_06472914.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
 gi|289509319|gb|EFD30247.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
          Length = 482

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 114/284 (40%), Gaps = 43/284 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LAV GT GK++ +  V    Q  G   SF IG  S I+  A  N       I++A+A   
Sbjct: 119 LAVAGTHGKTTTSLMVTVALQACGADPSFVIG--SDINE-AGSNAHAGTGEIFVAEADE- 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRL 233
             S G                   G  L+A S    TN+  DH+DY+Q  +    A  R 
Sbjct: 175 --SDG-------------------GFLLLAPSGAIVTNVEADHLDYYQRPEDVEAAFARF 213

Query: 234 FEELLPKESPAIIYADD---AYSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCA 284
            + + P     +  ADD   A     ++     G +   V   G+ +       L  V A
Sbjct: 214 VDGVDPNGF-VVACADDPGAALLVAALRERERDGGKAPRVTTYGESVDAHVRVELPMVSA 272

Query: 285 IHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +  +V   V G+    L   +PG   ++NA  A    + +G+ +A +LE L       
Sbjct: 273 AGSTCEVV--VRGRRLGELSLRVPGRHNLHNAAGALAAGLELGLPAAGLLEGLAGFAGAR 330

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            RFE  GT   G R+  DYA+    +  +L+  R I  G  +VV
Sbjct: 331 RRFETKGTAG-GIRVIDDYANHPTKVVSVLRAARDIVDGGNVVV 373


>gi|46446885|ref|YP_008250.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|62900536|sp|Q6MBS4|MURD_PARUW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46400526|emb|CAF23975.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 119/291 (40%), Gaps = 56/291 (19%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +I+ VTGT+GK++V   +  I   +GL +  +G             + TP    L + + 
Sbjct: 112 SIIGVTGTNGKTTVTLLITHILNANGLKAKALG------------NVGTP----LTREIL 155

Query: 176 YLSSQGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  Q +    +E SS+ LD   Q  LD   ++     N+  DH++ ++T + Y  +K +
Sbjct: 156 TLDFQEIA--VLELSSYQLDTFQQQVLDEAVVL-----NITPDHLERYETMENYAKSKFQ 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + + L  K+S  +        K  ++  H       + GY         +C++       
Sbjct: 209 IGKCL--KKSGKLFVE----RKAAVEYQHLLNFPHSTYGYLPSCHTYTDLCSVF------ 256

Query: 293 ISVEGKDFDFLFPLPGEFQ------VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +EG      F LP E+Q      + N L A  +C   GI     L+ L+       R 
Sbjct: 257 --LEGMQ---QFELPLEWQGKENHDLENLLAAYAICARRGIKPQQFLQALKTFQKPSHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           EFV     G   Y D   T  +++ +++ +++I       VF   G  D+G
Sbjct: 312 EFV-LEKNGIHFYDDSKGT--NIDAVMRAVQSINRP----VFLIAGGVDKG 355


>gi|259501810|ref|ZP_05744712.1| Mur ligase [Lactobacillus antri DSM 16041]
 gi|259170234|gb|EEW54729.1| Mur ligase [Lactobacillus antri DSM 16041]
          Length = 445

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +V A+         V+  D++F  P+ G + +YNAL A  L   IG++ A +    EK  
Sbjct: 240 RVTAVDEMTSADSIVKFDDYEFKIPVGGSYNIYNALAAYSLSRFIGVEQADIKTAFEKSP 299

Query: 341 VVPGRFEFV 349
            + GR E V
Sbjct: 300 EIFGRQERV 308


>gi|241668949|ref|ZP_04756527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877481|ref|ZP_05250191.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843502|gb|EET21916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 414

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 119/288 (41%), Gaps = 54/288 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS++ + +  + +  G  S  +G             + TP    + +   Y
Sbjct: 99  MIAVTGSNGKSTIVTMLDFVLRNLGYKSILVG------------NIGTPPLNKIGEKFDY 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VE SS  +D    + ++   G   N+  DH+D ++  + Y  +K+ L + 
Sbjct: 147 --------CVVEVSSFQID--LFNSVEFDLGCVVNVSPDHLDRYKNYEEYKQSKLNLAK- 195

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                     ++ D +  +V    HN G +     Y G++  ++   +I+      + + 
Sbjct: 196 ----------FSKDFFVYDV----HNTGIK-----YAGEYQIVRG--SIYKDTTKLLDIT 234

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +      L GE  + N +V   +    GID +  +  ++K   +  R E V   +  G
Sbjct: 235 ETN------LFGEHNLENIIVVLNIFDRFGIDISKAVAAIKKFKGLKHRCEIV--KNIAG 286

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
             Y++ +  +N +   +  + +ITS + I++   GG    G   +M K
Sbjct: 287 VTYINDSKGTN-VGATIAALNSITSSKNIILL-LGGVAKGGDFSLMSK 332


>gi|21232719|ref|NP_638636.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767206|ref|YP_241968.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114532|gb|AAM42560.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572538|gb|AAY47948.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 452

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 135/345 (39%), Gaps = 53/345 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLS----LFASRLYGKH 113
           ++P  I+  A+ +V+ +A S        R N  +  V+D  R++ S    L    L G+ 
Sbjct: 54  YLPANISADAQDVVIGNALS--------RGNAAVEAVLDAGRRYSSGAQWLAEQVLPGR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + LAV GT GK++  + +  + + +G +     P   I   A+D              
Sbjct: 105 --DTLAVAGTHGKTTTTTILSYLLEAAGRA-----PGFLIGGVAEDF------------G 145

Query: 174 LSYLSSQGVTHVSVEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +S    QG   V VEA  +       + +    + +     NL  DH D          A
Sbjct: 146 VSARLGQGREFV-VEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPD----VAA 200

Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCA 284
             R F  L+   P     I+  +DA   EV+      GC   V   G+        ++ A
Sbjct: 201 IQRQFHHLVRTVPARGRLIVNGEDARLAEVLA----MGCWTPVERFGFDPALDWSAQLLA 256

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               +   +    +     +PL G   V N L A     A+G+D   V+  L +   V  
Sbjct: 257 DDGSRFAVLHRGEEIGQVQWPLLGRHNVLNGLAALAAVQAVGVDPVTVMPALARFQSVKR 316

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           R E +G  ++G  +Y D+AH   ++   L+ +R  + + R++V  
Sbjct: 317 RLEVLG-QAQGITVYDDFAHHPTAIATTLQGLRAKVGTARVLVAM 360


>gi|298242456|ref|ZP_06966263.1| protein of unknown function DUF1727 [Ktedonobacter racemifer DSM
           44963]
 gi|297555510|gb|EFH89374.1| protein of unknown function DUF1727 [Ktedonobacter racemifer DSM
           44963]
          Length = 603

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 38/74 (51%)

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           ++Q++ I++   + + + PLPG + +YN L A  +  AI +    V   +E+   V GR 
Sbjct: 312 DRQRLHIAIGDTEHELVVPLPGIYNIYNTLGAIAVAEAINLPWIPVQTGIERFKPVFGRG 371

Query: 347 EFVGTNSRGGRIYV 360
           E +    R  R+ +
Sbjct: 372 ESIDVEGRTIRLLL 385


>gi|269838015|ref|YP_003320243.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
 gi|269787278|gb|ACZ39421.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
          Length = 473

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 101/273 (36%), Gaps = 26/273 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LAV GT GKS+ +  +      +G   SF +G  + +     + R     P ++A+A  Y
Sbjct: 118 LAVAGTHGKSTTSGMLALALVHAGEDPSFAVG--AVVKELGTNARPGA-GPFFVAEADEY 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S    H  V                      TN+  DH D   ++++   A  R    
Sbjct: 175 DYSFLWLHPDVAV-------------------VTNIEHDHPDLFPSRESVLEAFTRFVSG 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           + P  +  ++ ADD   ++++ R  +   RV++ G                   +  +  
Sbjct: 216 MRPDGT-LVVSADDPGCRDLLARLGDRRPRVVTFGSDPNADWSIVRDEETGSGDLVRAPG 274

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+       +PG     NAL A     A G+    +L  L     V  RFE  G  +RG 
Sbjct: 275 GRTLRLRLAVPGWHNRLNALAALAAGEAAGVAPERLLPGLAAFGGVGRRFEVRG-QARGV 333

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            +  DYAH    +   ++  R    + R+  VF
Sbjct: 334 TVVDDYAHHPTEIRATIEAARERYPAARLWAVF 366


>gi|226320606|ref|ZP_03796166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
 gi|226234025|gb|EEH32746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
          Length = 339

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+   I    + A  GNK DG  F+   I  G +    S  +   + 
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  K     +A+TG++GK++    +  I  +
Sbjct: 84  IKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK 142


>gi|30248995|ref|NP_841065.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas europaea ATCC
           19718]
 gi|44888192|sp|Q82VS2|MURC_NITEU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30138612|emb|CAD84903.1| murC; UDP-N-acetylmuramate--alanine ligase protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 473

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 116/300 (38%), Gaps = 55/300 (18%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           Q A+A+V+S+A         I S+ P ++    R+   +  + +  +       +A+ GT
Sbjct: 63  QSADAVVISTA---------IHSDNPEVIAARERRIPVVPRAMMLAELLRLRRGIAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLS-SFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            GK++  S V  I   +G   +F IG    T+ S A+           L K         
Sbjct: 114 HGKTTTTSLVASILAEAGQDPTFVIGGKLKTVDSHAR-----------LGKG-------- 154

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEE 236
              + VEA         L  +  +    TN+  DH+     D+++ +Q +       F E
Sbjct: 155 -EFIVVEADESDASFLYLQPVLTVV---TNIDADHMSTYEHDFNRLKQTFVE-----FIE 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV------CAIHNKQQ 290
            LP    A++  DD + +E++         V + G   +   +         C +H    
Sbjct: 206 HLPFYGMAVLCVDDPHVREIISMITRP---VTTYGIASEDAQICATNIRHDRCRMHFLAH 262

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + ++   +  +    LPG+  V NAL A  +   +G+    +++ L     V  RF+  G
Sbjct: 263 IGVNGSPRTLEVTLNLPGKHNVLNALAAIAVGNELGVPDEAIVKALATFGGVDRRFQQYG 322


>gi|167626512|ref|YP_001677012.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189082909|sp|B0TZ72|MURD_FRAP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167596513|gb|ABZ86511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 414

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 119/288 (41%), Gaps = 54/288 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS++ + +  + +  G  S  +G             + TP    + +   Y
Sbjct: 99  MIAVTGSNGKSTIVTMLDFVLRDMGYKSILVG------------NIGTPPLNKIGEKFDY 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VE SS  +D    + ++   G   N+  DH+D ++  + Y  +K+ L + 
Sbjct: 147 --------CVVEVSSFQID--LFNSVEFDLGCVVNVSLDHLDRYKNYEEYKQSKLNLAK- 195

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                     ++ D +  +V    HN G +     Y G++  ++   +I+      + + 
Sbjct: 196 ----------FSKDFFVYDV----HNTGIK-----YAGEYQIVRG--SIYKDTTKLLDIT 234

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +      L GE  + N +V   +    GID +  +  ++K   +  R E V   +  G
Sbjct: 235 ETN------LFGEHNLENIIVVLNIFDRFGIDISKAVAAIKKFKGLKHRCEIV--KNIAG 286

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
             Y++ +  +N +   +  + +ITS + I++   GG    G   +M K
Sbjct: 287 VTYINDSKGTN-VGATIAALNSITSSKNIILL-LGGVAKGGDFSLMSK 332


>gi|315658530|ref|ZP_07911402.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
 gi|315496859|gb|EFU85182.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
          Length = 449

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 26/205 (12%)

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G+D++R   I +I    TN+   H+DYH T + Y NAK +++     K   A  Y    Y
Sbjct: 174 GIDKYR-PHIAII----TNIYSAHLDYHGTLENYQNAKKQIY-----KNQTADDYLICNY 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEF 310
            +  +  +     + L    Q      ++V  I+ K    I   V   + D L  LPGE 
Sbjct: 224 HQRHLIESEQLKAKTLYFSTQ------QEVDGIYIKDNFIIYKGVRIINIDDLV-LPGEH 276

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N L A    +  G+    +++ L     +  R +++GTN R  + Y D +  +N+L 
Sbjct: 277 NLENILAAVLASLLAGVPVKAIIDSLTTFSGIEHRLQYIGTN-RTNKYYND-SKATNTLA 334

Query: 371 MILKNIRTITSGRIIVVFGCGG-DR 394
                   + S    +++ CGG DR
Sbjct: 335 TQF----ALNSFNQPIIWLCGGLDR 355


>gi|85058428|ref|YP_454130.1| UDP-N-acetylmuramate--L-alanine ligase [Sodalis glossinidius str.
           'morsitans']
 gi|109892741|sp|Q2NVV0|MURC_SODGM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84778948|dbj|BAE73725.1| UDP-N-acetylmuramate-alanine ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 490

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 104/293 (35%), Gaps = 57/293 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  + V  I   +GL      PT                   L KA    
Sbjct: 122 IAIAGTHGKTTTTAMVASIYAEAGLD-----PTFVNGG--------------LVKAAGVH 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G +   + A +   D   L    ++A   TN+  DH+D +Q            F   
Sbjct: 163 ARLGCSRYLI-AEADESDASFLHLQPMVA-IITNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 238 LPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSV---GYQGKFIHLKKVCA 284
           LP    A++  DD   +E++ R          + +A  R+      G +G F   ++   
Sbjct: 221 LPFYGRAVMCIDDPVIRELLPRVGRQITTYGFSDDADLRITDYRQDGARGSFTFTRQ--- 277

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                      E  D       PG     NA+ A  +    GI+   +L+ + +      
Sbjct: 278 -----------EKADLRVELNAPGRHNALNAVAAIAVATEEGINDESILQAMLQFQGTGR 326

Query: 345 RF------EFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           RF      + V  N + G + +  DY H    ++  +K  R      R+++VF
Sbjct: 327 RFDDLGHYDLVNVNGKTGEVMLVDDYGHHPTEVDATIKAARAGWPDKRLVMVF 379


>gi|332976801|gb|EGK13630.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Psychrobacter
           sp. 1501(2011)]
          Length = 522

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 29/145 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++ KS+V + V Q+ + +G+S   +G    I                   ALS 
Sbjct: 163 IVAITGSNAKSTVTTLVGQMAKDAGIS---VGVGGNIG----------------VPALSL 203

Query: 177 LSSQ----GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           L  +     +T   +E SS  L+     G K+   +  N+  DH+D H     Y  AK R
Sbjct: 204 LDDEQLGDNMTLAVLELSSFQLETVTNLGAKV--ATVLNMSPDHLDRHGDMLGYHQAKHR 261

Query: 233 LFEELLPKESPAIIYADDAYSKEVM 257
           +F+         ++  DDA S+ ++
Sbjct: 262 IFQ----GAQSVVVNRDDALSRPLI 282


>gi|325519769|gb|EGC99074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. TJI49]
          Length = 131

 Score = 37.7 bits (86), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FVA+ G + D H F+          +    A +     A      P+
Sbjct: 29  VSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPAGLAMPL 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           +V   TR  L   A     +    ++AVTG++GK++V   +  I   +G
Sbjct: 81  IVGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASIFAAAG 129


>gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145]
 gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145]
          Length = 818

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 74/373 (19%), Positives = 147/373 (39%), Gaps = 53/373 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           LI++ S  P  +  + I+ + +DSR +      +F  + G K + H +I     +G  + 
Sbjct: 14  LISEKSSLP--FPNQVIHRLLTDSRKVTETKNTLFFVLKGRK-NAHHYIKDLYHKGVRSF 70

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V    Y  Q F  T   +   L   +  + L   A+   GK    ++ +TG++GK+ V  
Sbjct: 71  V----YYDQGFDITNFPDANFLYSPDPLRALQNLAAVHRGKFSFPVIGITGSNGKTVVKE 126

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEA 189
           ++ Q+       +++     +  S+  ++++  P  I+    L  L+    G++      
Sbjct: 127 WLYQLL------AYKYTIVRSPKSY--NSQIGVPLSIWKMDTLYNLAIFEAGISQTG--- 175

Query: 190 SSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--------LPK 240
                +  RL+  IK   G FTN+G  H +    ++     K +LF  +          +
Sbjct: 176 -----EMERLEKIIKPSIGVFTNIGSSHDEGFSDKEEKIAEKFKLFAHVNKLICNKEFSE 230

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +P  +   D Y+  +     N   + +SV   G  I      + +  ++++I +     
Sbjct: 231 YAPQSV---DLYTWSLDDNTANLYVKEISVEDTGTSIK-----STYEDREISIKI----- 277

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P   +    NA+    + +  G   + + + + KLH V  R E     +    I  
Sbjct: 278 ----PFKDKASTENAITCLLVMLVFGYSESEIEDKMSKLHPVKMRLEMKSGINNTSIIDD 333

Query: 361 DYAHTSNSLEMIL 373
            Y    +SLE+ L
Sbjct: 334 SYNSDLSSLEIAL 346


>gi|284036910|ref|YP_003386840.1| FolC bifunctional protein [Spirosoma linguale DSM 74]
 gi|283816203|gb|ADB38041.1| FolC bifunctional protein [Spirosoma linguale DSM 74]
          Length = 428

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 157/395 (39%), Gaps = 55/395 (13%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYL 177
           V GT+GK S +  +  I Q +G   +++G  ++  + SF +  RL    PI   + + ++
Sbjct: 51  VAGTNGKGSTSHMLAAIYQSAG---YRVGLYTSPHLKSFTERIRLNG-RPIPEEEVVRFV 106

Query: 178 SSQGVTHVSVEAS--------------SHGLD--------QHRLDG---IKLIAGSFTNL 212
             Q     SVE S               H +D          RLD    I  IA   TN+
Sbjct: 107 EQQQPLIESVEPSFFEVTVAMAFYFFARHAVDIAIIEVGLGGRLDSTNVITPIASVITNI 166

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G DH D          A+      ++    P II      ++EV      +      + +
Sbjct: 167 GYDHTDILGDTLPLIAAEK---AGIIKPGVPVIIGESHPETQEVFTSV--SASLQAPITF 221

Query: 273 QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNA----LVAAGLCIAIGI 327
             +   +  +  +   +Q +IS  +G  +     L G +Q+ N          L     +
Sbjct: 222 ADRQYLVNDLGLVDGIRQASISRGDGSGWLAQLDLLGAYQLKNLPGVFATVEQLQQQFPV 281

Query: 328 DSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            +A   E L  + ++ G   RF+ +G++ R   +  D AH    LE +   IR+I    +
Sbjct: 282 TAAQQQEGLASVSLLTGLKGRFQTLGSHPR---VIADTAHNQPGLEALFDTIRSIPYKTL 338

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFIEK 442
            ++ G   D+D+ K  ++  +  + A       + PRS   + ++ E  ++  I      
Sbjct: 339 RIIIGLVADKDRSK--VLSVLPTN-AVYYFCQANTPRSLSAQLLQQEARVLGRIGDVFTD 395

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            N   A+  A+E  +  D+L++ G  + T+  +TN
Sbjct: 396 VN--TALAAALEQADPDDLLLITGSNY-TIAELTN 427


>gi|254413248|ref|ZP_05027019.1| Vault protein inter-alpha-trypsin [Microcoleus chthonoplastes PCC
           7420]
 gi|196179868|gb|EDX74861.1| Vault protein inter-alpha-trypsin [Microcoleus chthonoplastes PCC
           7420]
          Length = 1037

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 38/82 (46%)

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G  +A V+   E   VV   F     N     I V +  T N+ E   + +R + + + 
Sbjct: 813 LGRGTAEVVPPNESAEVVAQEFFQEINNPVLTNIQVSWEGTGNAPEFYPQKVRDLFANQP 872

Query: 385 IVVFGCGGDRDQGKRPIMGKIA 406
           +VVFG  GDR  GK  I G +A
Sbjct: 873 LVVFGRKGDRTNGKLKISGTVA 894


>gi|160893852|ref|ZP_02074635.1| hypothetical protein CLOL250_01406 [Clostridium sp. L2-50]
 gi|156864504|gb|EDO57935.1| hypothetical protein CLOL250_01406 [Clostridium sp. L2-50]
          Length = 458

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 14/140 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           PE I++VTGT+GK++V + +    +++G         S I++          S +     
Sbjct: 51  PETIISVTGTNGKTTVCNMIIDALEKNGYDVLSNRAGSNINA-------GVASALIAESK 103

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS  + + +    ++  S  L       IK      TNL RD I  +   +  FN    +
Sbjct: 104 LSGKTRKKIAVFEIDERSSKL---IYPYIKPTFAVCTNLFRDSIHRNANPEFIFN----I 156

Query: 234 FEELLPKESPAIIYADDAYS 253
               LP+ES  I+ ADD  S
Sbjct: 157 INSSLPEESHLILNADDLIS 176


>gi|160880895|ref|YP_001559863.1| FolC bifunctional protein [Clostridium phytofermentans ISDg]
 gi|160429561|gb|ABX43124.1| FolC bifunctional protein [Clostridium phytofermentans ISDg]
          Length = 424

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 152/399 (38%), Gaps = 62/399 (15%)

Query: 110 YGKHPENILA---VTGTSGKSSVASFVQQICQRSGL--------------SSFQI-GPTS 151
           Y  HPE  L    V GT+GK S    +  I + +GL                 QI G   
Sbjct: 31  YMDHPEKKLKFIHVAGTNGKGSTCKMLSSILRCAGLKVGLFTSPFLETENEQIQINGEVI 90

Query: 152 TISSFAQDNRLTTPSPIYL-------------AKALSYLSSQGVTHVSVEASSHG-LDQH 197
           +   FA+  +       YL             A A  Y        V +E    G LD  
Sbjct: 91  SNEDFAKVCKKVKDFTTYLMLDEIPTEFELTTAMAFQYFYDTKCDLVVLEVGLGGELDAT 150

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            +    L++   TN+G DH+DY  T       K      ++ +    + Y  +   +EV+
Sbjct: 151 NVIETPLVS-VLTNIGIDHVDYLGTTLKEIACKKA---GIIKENGIVVSYEQEKEVEEVI 206

Query: 258 K----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           K      HN   +++   +    +H + +    ++Q+ +     ++ +    L GE Q  
Sbjct: 207 KLTCEERHN---KLVFAEFSELKLHQENL----SRQKFSYK---QNTNLSLSLIGEHQRK 256

Query: 314 NALVAAGLCIAIGIDSALVLEHL--EKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           NA VA  +   +      + E+   E ++ V  PGRFE +    +   + +D  H    +
Sbjct: 257 NAAVALEVIAQLQTLGYKISENAISEGMNYVTWPGRFEVL---CKQPLVILDGGHNVQCV 313

Query: 370 EMILKNIRTITSG-RIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           E   + ++    G + IV+ G   D+D +G  P +  +      IA VT  N R+   E+
Sbjct: 314 EAFSEVLKQFIPGKKAIVILGVLADKDYKGMIPYL--VPFTKRFIA-VTPKNTRALPSEQ 370

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  E+    P        +E I  A+    + D++ V G
Sbjct: 371 LAEELSKHHPLVSHNATPVEGIMAALRDAREDDIICVIG 409


>gi|30022545|ref|NP_834176.1| folylpolyglutamate synthase [Bacillus cereus ATCC 14579]
 gi|29898103|gb|AAP11377.1| Folylpolyglutamate synthase [Bacillus cereus ATCC 14579]
          Length = 433

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 23/189 (12%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLE-----K 338
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E  E     +
Sbjct: 236 SEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGYQ 295

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQG 397
                GRFE + +N     I +D AH    +E ++K +        +IV+F   GD+   
Sbjct: 296 EAYWVGRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQL- 351

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++G++     +I   T    R+   +K+ +          E  N  EAI T +EM+ 
Sbjct: 352 -HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE--NWKEAIDTKVEMIA 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 ENDVFIITG 417


>gi|323343869|ref|ZP_08084096.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
 gi|323095688|gb|EFZ38262.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
          Length = 458

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 135/363 (37%), Gaps = 70/363 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL--SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           L   GT GK++ ++    I  +S L  ++F  G +    +                   +
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGT-------------------N 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y+ S     V +EA       H L   +      T+   DH+D + T++AY  +  R + 
Sbjct: 156 YILSDTSDFVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYT 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTIS 294
            L+ K    II+ D       MK+    G +V     ++G F          + + + I 
Sbjct: 212 TLIQKGGALIIHRDLE-----MKQNVQEGVKVYDYSLHEGDF----------HAENIVIE 256

Query: 295 VEGKDFDFLFPL----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                FDF+ P+          P    + N + A  +    G  S  +   ++  H V  
Sbjct: 257 NGEITFDFISPIENIKDIRLGQPIPINIVNGIAAMAMAQLNGCTSEELRYGMKTYHGVER 316

Query: 345 RFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR-IIVVFG---CGGDRDQGKR 399
           RF+F     +   +++ DYAH    +    K+IR +   R I  +F        RD  K 
Sbjct: 317 RFDFKIKTDK--LVFLSDYAHHPKEIYQSAKSIRELYKDRKITAIFQPHLFTRTRDFYKE 374

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                 AL   D  I+ D  P  E P       I G+   +   N  E +  +  M++K+
Sbjct: 375 FAE---ALSQLDEVILCDIYPAREQP-------ISGVTSKLIYDNLKEGVEKS--MIHKE 422

Query: 460 DVL 462
           DV+
Sbjct: 423 DVI 425


>gi|291326816|ref|ZP_06125975.2| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
 gi|291312715|gb|EFE53168.1| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
          Length = 472

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 129/340 (37%), Gaps = 54/340 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A  +VVS+A S ++          I V+        L   R +G      +AV GT G
Sbjct: 62  ENASVVVVSTAISSENPEIQAAKELRIPVIRRAEMLAELMRYR-HG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  + +  I  ++GL  +F  G    + S     RL + S   +A+A     S+L  Q
Sbjct: 115 KTTTTAMISGIYAQAGLDPTFVNG--GLVKSAGTHARLGS-SRYLIAEADESDASFLHLQ 171

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V     +  +D ++        G F NL    I++      Y  A M + + ++  
Sbjct: 172 PLVAVVTNIEADHMDTYQ--------GDFDNLTNTFINFLHNLPFYGRAVMCIDDPVIRS 223

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEG 297
             P I      Y       + +A  R+      G QG F       A  N  ++T+ +  
Sbjct: 224 LLPKIGRYITTYGF-----SEDADVRITQYEQKGNQGFF-----TIARENMPELTVVLNA 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT------ 351
                    PG     NA  A  +    GID   +L  L +      RF+F+G       
Sbjct: 274 ---------PGRHNALNATAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNFPLRNV 324

Query: 352 NSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           N + G + +  DY H    ++  +K  R      RI++VF
Sbjct: 325 NGKEGEVMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVF 364


>gi|261338918|ref|ZP_05966776.1| hypothetical protein ENTCAN_05116 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318743|gb|EFC57681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 438

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G++   +G    I           P+ + L K    
Sbjct: 107 IIAITGSNGKSTVTTLVGEMAKAAGMN---VGVGGNIG---------LPALMLLDK---- 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
               G     +E SS  L+      +   A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 151 ----GCELYVLELSSFQLETTT--SLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAKVCVVNADDALTMPV----RGADDRCISFGITMGDYHLNR 242


>gi|296129439|ref|YP_003636689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
 gi|296021254|gb|ADG74490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
          Length = 476

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G +FVA+ G   DGH F   A A  A A +V +A +L      +  +   
Sbjct: 30  VVTDSREVEPGGLFVALPGEHVDGHDF--AAGAVAAGAALVLAARALPGLPCVVVPDVER 87

Query: 93  LVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            + D  R  L+    A+ L G     ++ VTG+ GK++    + Q+C  +G
Sbjct: 88  ALGDLARAVLARLRDAATLPGGSGLRVIGVTGSVGKTTTKDVLAQLCGAAG 138


>gi|225857146|ref|YP_002738657.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           P1031]
 gi|254766027|sp|C1CLL9|MURC_STRZP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225725082|gb|ACO20934.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           P1031]
          Length = 444

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLIRSTTGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFSGVKRRF 302


>gi|239917865|ref|YP_002957423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413641|ref|ZP_06245383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839072|gb|ACS30869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
          Length = 504

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 33  VSSDSRHIQA-GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           V+ DSR + A G ++VA  G + DGH FI  A+  GA A++   A    D +A      P
Sbjct: 30  VTPDSREVTAEGTLYVAKPGERADGHDFIDTALGAGAAAVLAERATHAPDGAA-----HP 84

Query: 92  ILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            ++V++    +   A     R+    P  ++ +TG++GK++    +  +    G +   +
Sbjct: 85  AIIVEDAVLAMGALAREVVRRVREHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPV 144

Query: 148 G 148
           G
Sbjct: 145 G 145


>gi|254491357|ref|ZP_05104537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxidans DMS010]
 gi|224463486|gb|EEF79755.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxydans DMS010]
          Length = 413

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 27/153 (17%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           Y + P  I+A+TG++GKS+V + +  + Q SG             +      L TP    
Sbjct: 71  YAEAP--IVAITGSNGKSTVTTLLALMAQLSG------------KTVKAGGNLGTP---- 112

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              AL  L  +      +E SS  L+  R   +   A    N+  DH+D + +   Y  A
Sbjct: 113 ---ALDLLEGETPDFYILELSSFQLETVR--SLNAFAAVVLNVSPDHMDRYDSVSDYQQA 167

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K ++F      +   ++  +D + +E+     N
Sbjct: 168 KQKIFN----GDGVMVLNTEDPFVQEMRIEGRN 196


>gi|295688148|ref|YP_003591841.1| dihydroxy-acid dehydratase [Caulobacter segnis ATCC 21756]
 gi|295430051|gb|ADG09223.1| dihydroxy-acid dehydratase [Caulobacter segnis ATCC 21756]
          Length = 617

 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 15/109 (13%)

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I +D  + + H   L+ +P R + +  +      Y+  AH ++++ + + N   IT G +
Sbjct: 77  IAVDDGIAMGHGGMLYSLPSR-DLIADSVE----YMVNAHCADAI-VCISNCDKITPGML 130

Query: 385 I--------VVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
           +        VVF  GG  + GK  + GKI ALDL D  +V  D+  S++
Sbjct: 131 MAAMRLNIPVVFVSGGPMEAGKVTVKGKIRALDLVDAMVVAADDSYSDE 179


>gi|83312943|ref|YP_423207.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
 gi|82947784|dbj|BAE52648.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 470

 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR I+ G +F+A+ G   DGH  +  A+A GA A +V   + L   +A    + P+
Sbjct: 29  VSIDSRSIEPGDLFIALEGPNHDGHDHVASALANGAAAALV---HKLPRGTA---EDAPL 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           ++V +T   L         +    I+AVTG+ GK+     +       G + + +G
Sbjct: 83  VLVKDTMTALQDLGIASRARSTARIVAVTGSVGKTGTKEMLALALSDQGATHYSVG 138


>gi|331645201|ref|ZP_08346312.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
 gi|330909938|gb|EGH38448.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli AA86]
 gi|331045958|gb|EGI18077.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
          Length = 491

 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|227548911|ref|ZP_03978960.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079039|gb|EEI17002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 475

 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 23/105 (21%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGI-------------KLI--AGSFTNLGRDHIDY 219
           S L +Q   ++ V  S   +D HR+D +             +L+  AG   NL  DHID+
Sbjct: 150 SGLRAQACGNIGVAVSDALVDAHRVDVLVAELSSFQLHWSQELVPDAGVLLNLADDHIDW 209

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           H +  AY +AK ++ +  +     A+   DDA   EV K A   G
Sbjct: 210 HGSFAAYAHAKAKVLQARV-----AVAGVDDA---EVAKLAARTG 246


>gi|167758768|ref|ZP_02430895.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
 gi|167663508|gb|EDS07638.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
          Length = 450

 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N   DH++ H T +AY NAK  +     P++   I+  +D  ++E  K+      +VL  
Sbjct: 185 NFTPDHLNRHHTMEAYVNAKKNIARNQGPQDY-CILNYEDGLTREFGKKVK---AQVLYF 240

Query: 271 GYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             Q K    I+L+    I+   +        +   L    G     N + A  +    G+
Sbjct: 241 SSQRKLEKGIYLEDGNIIYRDGEEVSVCRVDELQLL----GTHNYENVMAAVAMAYVYGV 296

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               + + +++   V  R E+V    + G  Y + +  +N  +  +K I+ +   R  V+
Sbjct: 297 PMETIRKSIKEFKGVEHRIEYV--TEKNGVAYYNDSKGTNP-DAAIKGIQAMN--RPTVL 351

Query: 388 FGCGGDRD 395
            G G D+D
Sbjct: 352 IGGGYDKD 359


>gi|222053879|ref|YP_002536241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
 gi|254766051|sp|B9M170|MURD_GEOSF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221563168|gb|ACM19140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
          Length = 453

 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 84/218 (38%), Gaps = 27/218 (12%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S   V  V VE SS      +L+GI+          N+  DH+D + + Q Y +AK+R+F
Sbjct: 153 SGNDVAQVVVELSSF-----QLEGIQRFRPKVAVLLNITEDHLDRYASYQDYIDAKLRIF 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E     +  A++  DD     V   A     RV     Q K +     C   +K  +   
Sbjct: 208 ENQTVDDF-AVLNVDDPL---VAACAATVKSRVFPFS-QRKELAEGIFC---SKGIIVYR 259

Query: 295 VEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +G +  F    F L G   + N + A    +  G D       +E    +  R EF+  
Sbjct: 260 WQGSELRFDTAAFKLKGVHNIENIMAALASTLLSGADPIKAGRAVESFKGLRHRMEFI-- 317

Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSGR 383
              GG  Y + +  +N      SLE   K I  I  G+
Sbjct: 318 REVGGVAYYEDSKGTNVGSVVKSLESFDKGITLIAGGK 355


>gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
 gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
          Length = 465

 Score = 37.7 bits (86), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ ++ DSR ++ G ++V ++G   DGH F  Q++A GA   +      + D  A     
Sbjct: 17  ISGITKDSRAVEPGQLYVPLIGENFDGHEFAAQSLAAGAAGSLWEEGCPVPDELA----E 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            P+++V +T   L   AS    +    I+ +TG++GK++       +
Sbjct: 73  APLVLVPDTLSALQRLASAYREELNVRIVGITGSNGKTTTKDLTAAV 119


>gi|289551034|ref|YP_003471938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180566|gb|ADC87811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 449

 Score = 37.7 bits (86), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 26/205 (12%)

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G+D++R   I +I    TN+   H+DYH T + Y NAK +++     K   A  Y    Y
Sbjct: 174 GIDKYR-PHIAII----TNIYSAHLDYHGTLENYQNAKKQIY-----KNQTADDYLICNY 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEF 310
            +  +  +     + L    Q      ++V  I+ K    I   V   + D L  LPGE 
Sbjct: 224 HQRHLIESEQLKAKTLYFSTQ------QEVDGIYIKDNFIIYKGVRIINIDDLV-LPGEH 276

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N L A    +  G+    +++ L     +  R +++GTN R  + Y D +  +N+L 
Sbjct: 277 NLENILAAVLASLLAGVPVKAIIDSLTTFSGIEHRLQYIGTN-RTNKYYND-SKATNTLA 334

Query: 371 MILKNIRTITSGRIIVVFGCGG-DR 394
                   + S    +++ CGG DR
Sbjct: 335 TQF----ALNSFNQPIIWLCGGLDR 355


>gi|302876578|ref|YP_003845211.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
 gi|307687253|ref|ZP_07629699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulovorans 743B]
 gi|302579435|gb|ADL53447.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
          Length = 458

 Score = 37.7 bits (86), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 21/122 (17%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I A+TG+ GK++  + V +I +  G +++  G   T              P++    
Sbjct: 116 PGKIFAITGSDGKTTTTTLVYEILKTEGYNTWVGGNIGT--------------PLFTKIE 161

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 +    V +E SS  L   +L    +   + TNL  +H+D H++   Y  AK  +
Sbjct: 162 ----EIKNTDKVVLELSSFQLMTIQL---PIEVSAVTNLSPNHLDMHKSMNEYIEAKENI 214

Query: 234 FE 235
           F+
Sbjct: 215 FK 216


>gi|25011704|ref|NP_736099.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           NEM316]
 gi|77414228|ref|ZP_00790390.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae 515]
 gi|44888215|sp|Q8E3U2|MURC_STRA3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24413244|emb|CAD47323.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159717|gb|EAO70866.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae 515]
          Length = 443

 Score = 37.7 bits (86), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 26/147 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH DY    +  FNA     +++   +    IY +D+   E+  +A      +  
Sbjct: 171 TNIDFDHPDYFTGLEDVFNAFNDYAKQV---QKGLFIYGEDSKLHEITSKA-----PIYY 222

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAA 319
            G++     + K         +T +V G DF   +          P  G+  + NA    
Sbjct: 223 YGFEDSNDFIAK--------DITRTVNGSDFKVFYNQEEIGQFHVPAYGKHNILNATAVI 274

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346
                +GID ALV EHL+    V  RF
Sbjct: 275 ANLYIMGIDMALVAEHLKTFSGVKRRF 301


>gi|299065670|emb|CBJ36843.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           CMR15]
          Length = 449

 Score = 37.7 bits (86), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 107/275 (38%), Gaps = 24/275 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++  S +  I Q +G    F +G      +F Q  RLT  S  ++ +A  
Sbjct: 93  VLAVAGTHGKTTTTSMLAWILQDAGYDPGFLVG--GVPRNFGQSARLTA-SDFFVIEADE 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y ++        +  S  +       I        NL  DH D      A    +     
Sbjct: 150 YDTA------FFDKRSKFVHYRPRTAI------LNNLEFDHADIF-PDLAAIETQFHHLV 196

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P +   ++   +   K V+ R    GC   +  +  +      +  + +     + +
Sbjct: 197 RTVPGQGRLLVNGREDSLKRVLAR----GCWSEAEFFGAEDGAGWAIANLGDDDSFDVML 252

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+      +PL G+    NAL A      +G+  A  +E L +   V  R E  GT   
Sbjct: 253 DGQVQGRVRWPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVD- 311

Query: 355 GGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388
           G  +Y D+AH   ++   +  + R + + RI+ V 
Sbjct: 312 GITVYDDFAHHPTAIRTTIDGLRRRVGAARILAVL 346


>gi|86605662|ref|YP_474425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. JA-3-3Ab]
 gi|118595697|sp|Q2JVR9|MURD_SYNJA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86554204|gb|ABC99162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           JA-3-3Ab]
          Length = 469

 Score = 37.7 bits (86), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GKS+  + V ++ + +GL     G     +S  A +       P ++   LS 
Sbjct: 106 VGITGTNGKSTTTALVAEMFKVAGLEGIPCGNIGLPLSQVALETWQGRRQPAWIVAELS- 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +EAS H +      G     G +T    DH++ H T + Y   K RL + 
Sbjct: 165 -------SYQLEASRHLMQSS--PGSPPRIGVWTTFTPDHLERHGTLERYAGFKARLLQ- 214

Query: 237 LLPKESPAIIYADDAY 252
              +    ++  +D Y
Sbjct: 215 ---RAQWRVVNGEDPY 227


>gi|326771700|ref|ZP_08230985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
 gi|326637833|gb|EGE38734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
          Length = 483

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-FSATIRSNTP 91
           V +DSR    G +FVA+ G + DGH  +  A   GA   +VS   + +   S       P
Sbjct: 31  VVTDSRQAAEGSLFVAVHGERTDGHAHLGSARDLGAVGAIVSDLEAARSGLSQGQAEEVP 90

Query: 92  I---LVVDNTRKFLSLFASRLYGKHPE--------NILAVTGTSGKSSVASFVQQICQRS 140
           I   LV D      +L  + L               ++A+TG+ GK++     +Q+   S
Sbjct: 91  IGLVLVEDTVAALGALARTHLEALRQAAAEQGDRLTVVAMTGSVGKTTTKDLTRQLLAAS 150

Query: 141 G 141
           G
Sbjct: 151 G 151


>gi|227891044|ref|ZP_04008849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
 gi|227867133|gb|EEJ74554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
          Length = 458

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 31/220 (14%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--------GSFTN 211
           N+  T    Y+A  +   +SQ    V+ EA+S       L   +L+            TN
Sbjct: 134 NQGKTEGKAYVAGNIGVPASQ----VAQEATSKDTIVTELSSFQLLGITEYHPKVAVLTN 189

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   HIDYH T++ Y NAKMR+           +   +D Y    +    N   + LS  
Sbjct: 190 IYEAHIDYHGTRENYVNAKMRI----------VMNQTEDDY---FVVNWDNEEWQELSQR 236

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIG 326
            + K +   ++    +   V         D + P     +PG   V NAL A  +    G
Sbjct: 237 SKAKIVPFSRLGKSKDGAYVADGYLFYREDKIMPVDDIKVPGTHNVENALAAIAVAKIFG 296

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             +  + E L     V  R ++V T   G + Y D   T+
Sbjct: 297 KSNEDIKEVLTTFSGVRHRTQYV-TTLNGRKFYNDSKATN 335


>gi|221202510|ref|ZP_03575540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
 gi|221208168|ref|ZP_03581173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221172071|gb|EEE04513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221177605|gb|EEE10022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
          Length = 468

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 147/373 (39%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR + AG +FVA+ G + D H F+          +    A +     A      P+
Sbjct: 29  VSTDSRTVGAGDLFVALKGERFDAHDFL--------ADVAARGAAAALVAQAPAGVALPM 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V   TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  IVGGETRASLGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAA------VGADAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNLNNDVGLPLTLLRLTAAHRLAVIELGMNH---PGETEILARLTAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R+L 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHAL-PPDGVAVFPADDAYAS--IWRVAATGNRILD 244

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              +  +     +V    +  ++ I              GE    NAL A    +A G+ 
Sbjct: 245 FALHDDERQTAAQVAGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAATAAALAAGVA 304

Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384
            + + + LE    V GR +       S  G   VD  + +N  S+   +  +    + R+
Sbjct: 305 LSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAPRV 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   D+G
Sbjct: 365 LVIGDMGEVGDEG 377


>gi|217964242|ref|YP_002349920.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290893199|ref|ZP_06556186.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|254766008|sp|B8DHD7|MURC_LISMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217333512|gb|ACK39306.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290557181|gb|EFD90708.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|307571190|emb|CAR84369.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes L99]
          Length = 447

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 129/362 (35%), Gaps = 71/362 (19%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL---- 104
           + G+  D + F  +A+ +    I+  SA ++Q+    I  N      +   + L L    
Sbjct: 28  VQGSDVDKYFFTQKALEEKQIPIMTFSADNIQEGLTIIAGNAFPDTHEEIERALELGLPV 87

Query: 105 -----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                F  +L   +    +A+TG+ GK+S    +  +          I PTS        
Sbjct: 88  IRYHKFLGQLIDGYTS--IAITGSHGKTSTTGLLSHVVG-------AIRPTS-------- 130

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                    YL    +   ++G  + ++EA  +   Q      K      TN+  DH DY
Sbjct: 131 ---------YLIGDGTGSGTKGAEYFALEACEY---QRHFLAYKPTYAIMTNIDWDHPDY 178

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
            ++    FNA    FE L  +   A+    DDA   E+ K + +        G + +F  
Sbjct: 179 FKSVDDVFNA----FETLGKQVKKAVFALGDDA---ELRKLSLDIPIIYFGFGEENEF-- 229

Query: 279 LKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGID 328
                     + V     G  FD          F  P  G+  V NAL    LC   G+ 
Sbjct: 230 --------QAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSVIALCDYEGLP 281

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIV 386
              V + L+    V  RF       +  ++ V DYAH  + +   +   R      +++ 
Sbjct: 282 VEDVKKELKTFEGVKRRFSIT---EKANQVLVDDYAHHPSEIRATVNAARQKYPDKKVVA 338

Query: 387 VF 388
           VF
Sbjct: 339 VF 340


>gi|145633134|ref|ZP_01788866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145635587|ref|ZP_01791285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229844909|ref|ZP_04465047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
 gi|144986360|gb|EDJ92939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145267149|gb|EDK07155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229812290|gb|EEP47981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
          Length = 437

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 40/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGV---KVGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 148 LNEDCELYV-LELSSFQLETTY--SLKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYHN 204

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +L  E       ++  +K  +  A N      S  Y  K  + K+   +  K +V 
Sbjct: 205 AKVGVLNNEDRLTFGENENQAKHTVSFAEN------SADYWLKTENGKQYLMV--KDEVI 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  E         L G     N L A  L  AIGI+   +   L     +  RF+ 
Sbjct: 257 LPCEEA------TLVGRHNYMNILAATALAQAIGINLDSIRAALRHFKGLDHRFQL 306


>gi|325847851|ref|ZP_08170073.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480869|gb|EGC83922.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 436

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L  H     K   G+  N+  DHID+H + + Y N K++L +    K+   +I 
Sbjct: 149 EVSSFQL--HNTKTFKPHIGAILNISPDHIDWHGSFENYANDKLKLAKN-QDKDDFLVIN 205

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD   K + K  +    ++     + K    I+LK        ++    +  KD     
Sbjct: 206 HDD---KILSKNKNKFKAKIYEFSMKEKVERGIYLKDDSLYLKDEKDIFLLNKKD----L 258

Query: 305 PLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFV 349
            + G   + NA   A LC+ + GID   V+++ +    +  R EFV
Sbjct: 259 KIVGNHNLANA-ACAMLCLYLYGIDLEKVIKYTKTFKAIEHRLEFV 303


>gi|218698514|ref|YP_002406143.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI39]
 gi|218703351|ref|YP_002410870.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UMN026]
 gi|293403163|ref|ZP_06647260.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|293408182|ref|ZP_06652022.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298378693|ref|ZP_06988577.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300900878|ref|ZP_07119015.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|301026101|ref|ZP_07189576.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331661465|ref|ZP_08362389.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331671610|ref|ZP_08372408.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
 gi|226711865|sp|B7NHJ7|MURC_ECO7I RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711867|sp|B7N7W4|MURC_ECOLU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218368500|emb|CAR16235.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI39]
 gi|218430448|emb|CAR11314.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli UMN026]
 gi|291430078|gb|EFF03092.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|291472433|gb|EFF14915.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298281027|gb|EFI22528.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300355642|gb|EFJ71512.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|300395672|gb|EFJ79210.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331061380|gb|EGI33343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331071455|gb|EGI42812.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
          Length = 491

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|153006301|ref|YP_001380626.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. Fw109-5]
 gi|152029874|gb|ABS27642.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. Fw109-5]
          Length = 513

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 115/286 (40%), Gaps = 37/286 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           P + + V GT GK++ ++ +  +   +G   SF +G       F  + RL          
Sbjct: 150 PRHGVVVVGTHGKTTTSAMMGFLLHHAGRDPSFLVG--GVTRDFDSNYRLGA-------- 199

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLI-----AGSFTNLGRDHIDYHQTQQAY 226
                      H +VE   +  D    D G K +        FT+   DH D ++  +A+
Sbjct: 200 ---------GPHFAVEGDEY--DTAYFDKGPKFLHYRPRTAIFTSCELDHADIYR-DEAH 247

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCA 284
           + +    F  +LP++      A  A  + V++ A  A CRV   +V   G     + +  
Sbjct: 248 YESAFERFMGILPEDG---FLAACASYESVLRIARGARCRVETYAVDRPGADWEARGLAL 304

Query: 285 IHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                + T++  G+   + L P+ G   V NAL  A    A+G+  A +   L   H V 
Sbjct: 305 SPEGARFTLARRGEALAEVLLPVGGAHNVENALGVAAAASALGLSPAEIAAGLGAFHGVK 364

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388
            R E  G  + G  +  D+AH   +++  L  IR    G R++  F
Sbjct: 365 RRQEVRG-KAGGVTVIDDFAHHPRAVQKTLAAIRGAYPGARLLAAF 409


>gi|118479623|ref|YP_896774.1| folylpolyglutamate synthase [Bacillus thuringiensis str. Al Hakam]
 gi|196044779|ref|ZP_03112013.1| FolC bifunctional protein [Bacillus cereus 03BB108]
 gi|229186698|ref|ZP_04313857.1| Folyl-polyglutamate synthetase [Bacillus cereus BGSC 6E1]
 gi|118418848|gb|ABK87267.1| folylpolyglutamate synthase [Bacillus thuringiensis str. Al Hakam]
 gi|196024267|gb|EDX62940.1| FolC bifunctional protein [Bacillus cereus 03BB108]
 gi|228596801|gb|EEK54462.1| Folyl-polyglutamate synthetase [Bacillus cereus BGSC 6E1]
          Length = 433

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S  G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K +++      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVKSHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+    ++ +          E  N  EAI T IEM+
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRAISAGELASYAKKESKLVFE--NWKEAIDTKIEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 GENDVFIITG 417


>gi|15895664|ref|NP_349013.1| folylpolyglutamate synthase [Clostridium acetobutylicum ATCC 824]
 gi|15025411|gb|AAK80353.1|AE007739_9 Folylpolyglutamate synthase [Clostridium acetobutylicum ATCC 824]
 gi|325509814|gb|ADZ21450.1| Folylpolyglutamate synthase [Clostridium acetobutylicum EA 2018]
          Length = 431

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 143/357 (40%), Gaps = 69/357 (19%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQ-----DNRLT--------- 163
           V GT+GK S  + + QI   +G   +++G  ++  I  F +     +N ++         
Sbjct: 44  VAGTNGKGSTTAMISQILIEAG---YRVGMYTSPYIEEFEERIQINNNNISKYDLCVIIE 100

Query: 164 -----------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG---IK 203
                            T   I  A A  Y   + V +  +E    G    R D    I 
Sbjct: 101 KVSDAVDKLKCEGIENPTEFEIITAAAFLYFCIKKVDYAVIEVGLGG----RFDATNVIN 156

Query: 204 LIAGSFTNLGRDHIDY---HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR- 259
            I    T++  DH+        + AY  A       ++ ++ P ++Y     ++EV+KR 
Sbjct: 157 PILTVITSISYDHMAILGDTLGKIAYEKAG------IIKEKVPLVMYPQHKEAEEVIKRA 210

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           AH     ++ V  +GK   +  +    NK  Q + I      +D    L G+ Q+ NA+ 
Sbjct: 211 AHEKEVSIIDVR-KGKAEFIDNLLE-DNKYFQYIHIKTLRDQYDVKLALLGKHQIINAVT 268

Query: 318 AAGLC-----IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A         + + +    +L  L K+    GR E + +N     + VD AH S+ +  +
Sbjct: 269 AVMAIETLKNVGVKVAKDHILNGLSKVR-WKGRLEVLKSNP---LVVVDGAHNSDGILKL 324

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            ++I       R+I++ G   D++  K  ++  I  D   I  V+  N R+ED +++
Sbjct: 325 KESIGVHFKYKRLILILGILADKEVKK--MVELITKDAYKIITVSPHNNRAEDEKEL 379


>gi|319649665|ref|ZP_08003821.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
 gi|317398827|gb|EFV79509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
          Length = 450

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 27/196 (13%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-----A 263
            TNL   H+DYH T++ Y  AK  +      K+   I+ AD     E   R+       +
Sbjct: 186 LTNLYDAHLDYHGTREEYHAAKANITMNQTEKDY-FIVNADQDKVMEAAARSEAKIIPFS 244

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             RVLS G      ++K      N +QV   ++ KD      LPGE  + N L +     
Sbjct: 245 TSRVLSEG-----AYVKDGWIYFNDEQV---MKRKDVS----LPGEHNLENILSSVAAAK 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             G+ +  + + L     V  R ++VG   SR  + Y D   T+     IL     +++ 
Sbjct: 293 LTGVGNEAISQVLSSFTGVKHRLQYVGEYQSR--KFYNDSKATN-----ILATKNAVSAF 345

Query: 383 RIIVVFGCGG-DRDQG 397
              V+   GG DR  G
Sbjct: 346 DQPVILLAGGLDRGNG 361


>gi|313680162|ref|YP_004057901.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Oceanithermus
           profundus DSM 14977]
 gi|313152877|gb|ADR36728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanithermus
           profundus DSM 14977]
          Length = 418

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           G+    VE SS  L+  R+ G +       NLG DH+D H + + Y  AK+RL   L
Sbjct: 141 GLAAAVVELSSFQLE--RVRGFRPRVAVLLNLGTDHLDRHGSLERYHAAKLRLLANL 195


>gi|309388994|gb|ADO76874.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium praevalens DSM
           2228]
          Length = 455

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 13/184 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KRAHNAGCRVL 268
            NL  DH D+++    + N   R F     KE+  +   DD     +   R  ++   + 
Sbjct: 179 NNLELDHPDFYKNLAEFMNIFER-FANKNDKEAFLLYNKDDQNLNNLFASRKKSSSFSLN 237

Query: 269 SVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              +  K I   + +    ++   Q  I +E         +PGE+ +YNAL AA + + +
Sbjct: 238 QANFSAKNIQYNNFESSFELYYLDQFVIKIE-------LSVPGEYNLYNALAAAAVSLKL 290

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRI 384
            ID   +   L+K   V  RF+F G    G    V DYAH    ++ +LK ++ +    I
Sbjct: 291 NIDLTALKSALKKFSGVGRRFDFKGKLLEGKVDLVDDYAHHPTEVKELLKTVKNMNYSNI 350

Query: 385 IVVF 388
            VVF
Sbjct: 351 RVVF 354


>gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
 gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
          Length = 462

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 66/127 (51%), Gaps = 12/127 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-SLQDFSATIRS 88
           ++ +S+DSR I+ G +F+ + G++ DGH ++     +  +  + + ++   Q   AT+  
Sbjct: 23  VSGISTDSRTIKPGELFIPLRGDRFDGHDYLNGLTERRIQVSLCNESWLQHQQPPATL-- 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQICQ---RSG 141
               + V +T + L   A+    +    ++ VTG++GK++    +A+ + Q+ Q    SG
Sbjct: 81  --SCIAVRDTLRALGDLAAAFRKRFALTMIGVTGSNGKTTTKEMLAAILDQVDQGLKTSG 138

Query: 142 LSSFQIG 148
             + QIG
Sbjct: 139 NLNNQIG 145


>gi|39998162|ref|NP_954113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
 gi|62900554|sp|Q748D4|MURD_GEOSL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39985108|gb|AAR36463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
          Length = 452

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 90/233 (38%), Gaps = 21/233 (9%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +   V  V VE SS  L+  R    +       N+  DH+D + T Q Y +AK R+F+  
Sbjct: 153 TGAAVDRVVVEISSFQLEWIR--SFRPTVAVLLNITEDHLDRYATYQEYIDAKARIFKNQ 210

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +  A++  DD     +  R   A     R   +G +G F     +   H  +Q    
Sbjct: 211 TASDW-AVLNVDDPIVAGLAGRTCAAVFPMSRQRELG-EGIFYRDGAIIFRHAGRQERFP 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +       F + G   + N + +    + +G D+   L  +E    +P R E V     
Sbjct: 269 TD------RFRITGVHNIENIMASLAAALLLGCDADRALACVEAFGGLPHRMELV-RELN 321

Query: 355 GGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           G R + D   T+  S+E  L +   IT      +   G D+     P+ G +A
Sbjct: 322 GVRYFEDSKATNVGSVEKALASFNDIT------LIAGGKDKGGSYAPLAGLVA 368


>gi|331681476|ref|ZP_08382113.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
 gi|331081697|gb|EGI52858.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
          Length = 491

 Score = 37.7 bits (86), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDKAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|227885004|ref|ZP_04002809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|227837833|gb|EEJ48299.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|307551935|gb|ADN44710.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli ABU 83972]
          Length = 491

 Score = 37.7 bits (86), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|226360234|ref|YP_002778012.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
 gi|226238719|dbj|BAH49067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
          Length = 504

 Score = 37.7 bits (86), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 150/380 (39%), Gaps = 60/380 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-------------------SSA 76
           DSR + AG +F+A+ G + DGH     A+  GA A++                    S A
Sbjct: 34  DSRKVTAGGLFLALPGARVDGHDHAASAVEAGAVAVLAARPVGVPAVVVSPAPGTGPSKA 93

Query: 77  YSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            +L+ D   +  +    L          L A  L       ++ VTG++GK+S    +  
Sbjct: 94  MALEHDTDGSGAAVLAALAKLARASVDDLTAKGL------TVVGVTGSAGKTSTKDLLAA 147

Query: 136 ICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +        +GP  +   SF  +N L  P     A A       G   + +E S+   
Sbjct: 148 VLR-------PLGPVVAPPGSF--NNELGHPWTALRADA-------GTGFLVLEMSAR-- 189

Query: 195 DQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYA 248
           D+  +  +  IA    G   N+G  H+    ++ A   AK  L E L   +    AI+ A
Sbjct: 190 DRGHIASLAAIAPPKIGVVLNVGTAHLGEFGSRDAIAAAKGELPESLPSADDGGVAILNA 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFP 305
           DD     V+  A     RV+ VG + +  H++    + +++   + T++           
Sbjct: 250 DDPL---VVAMAPRTSARVVLVG-RSESAHVRATDIVLDERARARFTLTTAAGSVPVELA 305

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + GE QV NAL AA + +  G D   +   L     V GR   V     G  +  D Y  
Sbjct: 306 VHGEHQVGNALAAAAVALECGADLDQIARALSAAAAVSGRRMDVRDRPDGVTVVNDSYNA 365

Query: 365 TSNSLEMILKNIRTIT-SGR 383
             +S+   LK + ++  SGR
Sbjct: 366 NPDSMRAALKALVSMARSGR 385


>gi|240168219|ref|ZP_04746878.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mycobacterium
           kansasii ATCC 12478]
          Length = 490

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 23/169 (13%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH---N 262
           AG   N+  DH+D+H T  AY  AK R+    +     A++  DD+ +  +++ A     
Sbjct: 192 AGVVLNIAEDHLDWHGTMAAYTEAKARVLTGRV-----AVVGLDDSRAAALLETAPAQVR 246

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVA 318
           AG R L     G+         + +   V  +    D   L     P+PG   V +AL A
Sbjct: 247 AGFR-LGEPAAGEL-------GVRDGHLVDRAF-AADLPLLPVASIPVPGPVGVLDALAA 297

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           A L  ++G+ +  + E +    V   R E V      G  YVD +  +N
Sbjct: 298 AALARSVGVSAGAIAEAVASFQVGRHRSEVVAVVD--GVTYVDDSKATN 344


>gi|229198586|ref|ZP_04325288.1| Folyl-polyglutamate synthetase [Bacillus cereus m1293]
 gi|228584868|gb|EEK42984.1| Folyl-polyglutamate synthetase [Bacillus cereus m1293]
          Length = 434

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S +G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SEDGEHFDFTCPFASFEDVRISMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K + +      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+    ++ +          E  N  EAI T +EML
Sbjct: 352 --HNMVGQLESIADEIIFTTFAFDRAISAGELASYAKEESKLVFE--NWKEAIDTKVEML 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 GENDVFIITG 417


>gi|284031631|ref|YP_003381562.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
 gi|283810924|gb|ADB32763.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
          Length = 953

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 159/405 (39%), Gaps = 58/405 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK-ALS 175
           I+AVTGT+GK++ A  +  + +  GL   ++G TST      D RL   +     K A  
Sbjct: 520 IVAVTGTNGKTTTARMISHVFK--GLGR-KVGMTST-DGVVIDERLVIRADASGPKSARM 575

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRL 233
            L +  V     E +  G+ +  L   +       N+  DH+      T +   + K  L
Sbjct: 576 VLQNPRVDFAVFEVARGGILREGLGYERNDVAVVLNIQPDHLGLRGVDTLEQLADVKAVL 635

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQV 291
            E + P++  A++ ADD   ++ M+R  +      S    G  +  +++  C    +  V
Sbjct: 636 VEAV-PRDGFAVLNADDPLVRK-MRRKCSGQVVWFSTAEAGSEVREYIEGHCRRGGRAVV 693

Query: 292 TISVEGKD------------FDFLFPLPGEF------QVYNALVAAGLCIAIGIDSALVL 333
               E  D              +   LP  F       V N + AA    A G     + 
Sbjct: 694 LERSELGDMIIMKHGRRSMQLAWTHLLPATFGGRAMMNVQNVMAAAAAAFAAGAPLHDIR 753

Query: 334 EHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---------- 379
           + L       ++ PGR   +  + R   + VDY H + ++ M+   +  +          
Sbjct: 754 QGLRTFNTSYYLSPGRLNEIEVDGR--HVIVDYCHNAPAMRMLGDFVDKLGESLGASSEV 811

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIP 437
               RI V+   G  RD   R  +G++A    D+ +V +D           AE I+ G+ 
Sbjct: 812 GRPSRIGVIATAGDRRDDDMRE-LGEVAAQHFDVVLVREDTRLRGRRRGESAELIVEGVR 870

Query: 438 GFIEKGNR----------IEAIRTAIEMLNKQDVLVVAGKGHETV 472
             I +G R          ++A+R A+   N+ D++V+    H++V
Sbjct: 871 AAIAQGARCRSVETVLEELDAVRHALTRSNRGDLVVLCVDQHQSV 915


>gi|225571175|ref|ZP_03780173.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
 gi|225160006|gb|EEG72625.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
          Length = 459

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 101/254 (39%), Gaps = 37/254 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKAL 174
           +AV+GT GK++  S +  I     L +  + PT ++    +    N     S +++ +A 
Sbjct: 114 IAVSGTHGKTTTTSMLSHI-----LLAGDLDPTISVGGILKAIGGNIKVGTSGLFVTEAC 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y +S                 H    I +I     N+  DH+D+ +      N+  R F
Sbjct: 169 EYTNSF---------------LHFFPKISVI----LNIDEDHLDFFKDLDDIRNS-FRRF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LLP +   +I  +    +E+        CRV++ G +    +     + + K   +  
Sbjct: 209 AALLPADGTLVINGEIENLEEITA---GLSCRVVTYGTEHSMNYSASNISHNEKGDASFD 265

Query: 295 VEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  K+ +F+      + G+  V NAL A  +   + +  A +   L++      RFE  G
Sbjct: 266 LV-KNGEFMERVQLSVNGDHNVSNALAAVAVADILSVPLADICRGLKEFAGTNRRFEHKG 324

Query: 351 TNSRGGRIYVDYAH 364
               G  +  DYAH
Sbjct: 325 -EKNGFTVIDDYAH 337


>gi|223041416|ref|ZP_03611619.1| folylpolyglutamate synthase [Actinobacillus minor 202]
 gi|223017674|gb|ACE87886.2| folylpolyglutamate synthase [Actinobacillus minor 202]
          Length = 431

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 74/402 (18%), Positives = 150/402 (37%), Gaps = 69/402 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST----------------------IS 154
           ++ V GT+GK S   F++    ++GL+   +G  S+                      I 
Sbjct: 51  VITVAGTNGKGSTCRFLEVALLKAGLT---VGVYSSPHLIRYNERVRINGEVLADHFHIQ 107

Query: 155 SFAQDNRLTTPSPIYLA----KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AG 207
           SFA  N   T S  Y       AL    +  +  V +E    G    RLD   ++     
Sbjct: 108 SFADINEKKTASLTYFEFSTLSALQLFKNAKLDVVILEVGLGG----RLDATNIVDPHLA 163

Query: 208 SFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             T++  DH+ +    ++     K  +F E +P     ++  +      ++  A    C 
Sbjct: 164 VITSIDIDHVAFLGDNREDIGREKAGIFREHIP-----VVIGEPDCPNSILTYAKQLQCH 218

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNA--LVAAGLCI 323
           V+           + V   ++ +    S +  D  F+  P+P    + NA   +AA   +
Sbjct: 219 VMQ----------RDVDWHYSVKAERFSWKAADQQFVDLPMP-LIPIPNAGTAIAALTQL 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--------GRIYVDYAHTSNSLEMILKN 375
              +   ++ E L +  +  GRF+ +  +            ++ +D  H  ++   + + 
Sbjct: 268 PFNMSEQIIRETLSEAQMT-GRFQTLAASDFAQFSGIMPKAKVIIDVGHNPHAARYLAER 326

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++ +  G+I  +F C  D++     I+  +   + +   V  D  R +  E +  +++  
Sbjct: 327 LQAVKKGKIFAIFSCLEDKELSG--IVEPLDNLIDEWFCVGLDCWRGQSGEAVFEKLVKS 384

Query: 436 IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +P        N  +A   A     +QD+++V G  H     V
Sbjct: 385 LPNATACAYENIAQATPIAFNQAKEQDIVLVFGSFHTVADFV 426


>gi|117622377|ref|YP_851290.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
 gi|166224687|sp|A1A7D6|MURC_ECOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115511501|gb|ABI99575.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
          Length = 491

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|27364038|ref|NP_759566.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio vulnificus CMCP6]
 gi|29611803|sp|Q8DEL1|MURC_VIBVU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27360155|gb|AAO09093.1| UDP-N-acetylmuramate--alanine ligase [Vibrio vulnificus CMCP6]
          Length = 486

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 44/284 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  +     +  +D +         G F  L +  ID+      Y  A + 
Sbjct: 182 DASFLHLQPMVCIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  EL+P+ S  +I     +S++   R  N        G QGKF  ++K C     
Sbjct: 234 IDDPVIRELIPRISRQVITY--GFSEDADVRIEN----YRQEGQQGKFTVVRKDC----- 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                    +  D    +PG     NA  A  +     I    +L  +        RFE 
Sbjct: 283 ---------EALDITLNIPGRHNALNAAAAIAVATEDEIGDDAILAAMVGTQGTGRRFEH 333

Query: 349 VGTNSRG-GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           +G    G G + +  DY H    +++ ++  R      R++++F
Sbjct: 334 LGEFETGNGNVMLVDDYGHHPTEVDVTIQAARNGWQEKRLVMIF 377


>gi|296269387|ref|YP_003652019.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
 gi|296092174|gb|ADG88126.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
          Length = 472

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 115/319 (36%), Gaps = 38/319 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV GT GK++  S +    Q+ G   S+ +G     +    D+                
Sbjct: 118 IAVAGTHGKTTTTSMLTVALQKCGADPSYCVGGLLATTGLGADD---------------- 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G   V+    S G        I ++    TN+  DH+D +   +A   +  R  E 
Sbjct: 162 --GAGDLFVAEADESDGSFLMLRPAIAIV----TNVEADHLDNYGDVRAVHESFARFVER 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +    S  ++ ADD  S  +   A   G  V++ G +      + V  +     V  +V 
Sbjct: 216 V---GSLLVLCADDPGSAALAAPARERGLTVVTYG-ESAGADYRTVDVVPEGLGVEFAVA 271

Query: 297 GKDFDFLFPL------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                  +PL      PG     NA     +   +G+    V   L        RFE  G
Sbjct: 272 AGSPGPGWPLRVRLAVPGRHNALNATAVIAVADRLGLPLGEVAAGLAAFGGAKRRFEAKG 331

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCG-GDRDQGKRPIMGKIAL 407
             + G  ++  YAH    L   L+  R + +GR  +I VF      R +      G  AL
Sbjct: 332 -EAGGVAVFDSYAHHPTELTADLRAAREVNAGRGRVIAVFQPHLYSRTRFFADAFGA-AL 389

Query: 408 DLADIAIVTDDNPRSEDPE 426
            LAD  IV D     EDPE
Sbjct: 390 GLADEVIVLDVYGAREDPE 408


>gi|295098595|emb|CBK87685.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 491

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 34/270 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  + V  I   +GL      PT                   L KA    
Sbjct: 122 IAVAGTHGKTTTTAMVSSIYAEAGLD-----PTFVNGG--------------LVKAAGVH 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G +   + A +   D   L  ++ +    TN+  DH+D +Q            F   
Sbjct: 163 ARLGHSRYLI-AEADESDASFLH-LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           LP    A++  DD   +E++ R    G ++ + G+ +   + ++    I  +   T++ +
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQITTYGFSEDADVRVEDYKQIGAQGHFTLARQ 277

Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----- 350
            KD        PG     NA  A  +    GID   +L  LE       RF+F+G     
Sbjct: 278 DKDLLHVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLE 337

Query: 351 -TNSRGGRIYV--DYAHTSNSLEMILKNIR 377
             N + G   +  DY H    ++  +K  R
Sbjct: 338 PVNGKPGSAMLVDDYGHHPTEVDATIKAAR 367


>gi|296101251|ref|YP_003611397.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055710|gb|ADF60448.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 438

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 39/217 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ IV S   +L   S +  ++  + +V +    + LF      + P  ++A+TG++G
Sbjct: 64  QAADLIVASPGMALAHPSLSAAADAGVEIVGD----IELFCRE--AQAP--VIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + V ++ + +G +   +G    I           P+ + L K        G    
Sbjct: 116 KSTVTTLVGEMAKAAGKN---VGVGGNIG---------LPALMLLDK--------GCELY 155

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPA 244
            +E SS  L+      +   A +  N+  DH+D Y    Q Y  AK+R++E         
Sbjct: 156 VLELSSFQLET--TSSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYE----NAKVC 209

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           ++ ADDA +  V      A  R +S G      HL +
Sbjct: 210 VVNADDALTMPV----RGADDRCISFGITMGDYHLNR 242


>gi|261253809|ref|ZP_05946382.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio orientalis
           CIP 102891]
 gi|260937200|gb|EEX93189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio orientalis
           CIP 102891]
          Length = 440

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 26/134 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V  +   + + SGL   ++G    I      + L   + +Y+ +  S+
Sbjct: 112 VIAITGSNGKSTVTDWTGCVAKASGL---KVGVGGNIG-VPALDLLQLDADLYVLELSSF 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E +S          +K  A +F NL  DH+D +     Y  AK+R+F++
Sbjct: 168 ---------QLETTS---------SLKPAAATFLNLSEDHMDRYDGMSDYRQAKLRIFQQ 209

Query: 237 LLPKESPAIIYADD 250
                   ++ ADD
Sbjct: 210 ----AKTCVVNADD 219


>gi|15799775|ref|NP_285787.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           EDL933]
 gi|15829349|ref|NP_308122.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. Sakai]
 gi|26246024|ref|NP_752063.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli CFT073]
 gi|91209155|ref|YP_539141.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UTI89]
 gi|157154862|ref|YP_001461261.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli E24377A]
 gi|157159562|ref|YP_001456880.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli HS]
 gi|168751399|ref|ZP_02776421.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755699|ref|ZP_02780706.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764030|ref|ZP_02789037.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771315|ref|ZP_02796322.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776935|ref|ZP_02801942.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781976|ref|ZP_02806983.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789618|ref|ZP_02814625.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801518|ref|ZP_02826525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|170683694|ref|YP_001742213.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SMS-3-5]
 gi|193065876|ref|ZP_03046937.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|193070828|ref|ZP_03051761.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194429353|ref|ZP_03061878.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194434422|ref|ZP_03066684.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194439419|ref|ZP_03071496.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|195939307|ref|ZP_03084689.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806463|ref|ZP_03248800.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812324|ref|ZP_03253653.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819975|ref|ZP_03260295.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400617|ref|YP_002268699.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215485257|ref|YP_002327688.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217325189|ref|ZP_03441273.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552674|ref|YP_002385587.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI1]
 gi|218557031|ref|YP_002389944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli S88]
 gi|218687968|ref|YP_002396180.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ED1a]
 gi|218693560|ref|YP_002401227.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 55989]
 gi|237704240|ref|ZP_04534721.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|253774879|ref|YP_003037710.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160213|ref|YP_003043321.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|254791228|ref|YP_003076065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|256020071|ref|ZP_05433936.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sp. D9]
 gi|260842327|ref|YP_003220105.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260866244|ref|YP_003232646.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261226848|ref|ZP_05941129.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255252|ref|ZP_05947785.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291280916|ref|YP_003497734.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|293417967|ref|ZP_06660589.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|293476751|ref|ZP_06665159.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|297518216|ref|ZP_06936602.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli OP50]
 gi|300816129|ref|ZP_07096352.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|300821904|ref|ZP_07102048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300931782|ref|ZP_07147082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300938486|ref|ZP_07153226.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300981128|ref|ZP_07175374.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|301048483|ref|ZP_07195508.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|306815311|ref|ZP_07449460.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|312966219|ref|ZP_07780445.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|331661137|ref|ZP_08362069.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331666328|ref|ZP_08367209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331680665|ref|ZP_08381324.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332281221|ref|ZP_08393634.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|54037856|sp|P65471|MURC_ECO57 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041506|sp|P65470|MURC_ECOL6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122425020|sp|Q1RGA4|MURC_ECOUT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017280|sp|A7ZHI2|MURC_ECO24 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017281|sp|A7ZW43|MURC_ECOHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706321|sp|B5YZC7|MURC_ECO5E RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711864|sp|B7MAL4|MURC_ECO45 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711866|sp|B7M134|MURC_ECO8A RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711868|sp|B1LG28|MURC_ECOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766001|sp|B7UIE1|MURC_ECO27 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766002|sp|B7LFW1|MURC_ECO55 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766003|sp|B7MNV0|MURC_ECO81 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12512797|gb|AAG54395.1|AE005186_1 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Escherichia coli O157:H7 str. EDL933]
 gi|26106421|gb|AAN78607.1|AE016755_107 UDP-N-acetylmuramate--alanine ligase [Escherichia coli CFT073]
 gi|13359551|dbj|BAB33518.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli O157:H7 str.
           Sakai]
 gi|91070729|gb|ABE05610.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli UTI89]
 gi|157065242|gb|ABV04497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli HS]
 gi|157076892|gb|ABV16600.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E24377A]
 gi|170521412|gb|ACB19590.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli SMS-3-5]
 gi|187767764|gb|EDU31608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014538|gb|EDU52660.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000410|gb|EDU69396.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357039|gb|EDU75458.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359896|gb|EDU78315.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365892|gb|EDU84308.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370793|gb|EDU89209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376362|gb|EDU94778.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|192926463|gb|EDV81096.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|192955858|gb|EDV86328.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194412573|gb|EDX28870.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194417338|gb|EDX33445.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194421678|gb|EDX37688.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|208726264|gb|EDZ75865.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733601|gb|EDZ82288.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740098|gb|EDZ87780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162017|gb|ACI39450.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746534|gb|ACI71574.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746536|gb|ACI71575.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746538|gb|ACI71576.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746540|gb|ACI71577.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746542|gb|ACI71578.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|215263329|emb|CAS07644.1| UDP-N-acetylmuramate: L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217321410|gb|EEC29834.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350292|emb|CAU95975.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli 55989]
 gi|218359442|emb|CAQ96980.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI1]
 gi|218363800|emb|CAR01460.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli S88]
 gi|218425532|emb|CAR06315.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli ED1a]
 gi|222031922|emb|CAP74660.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli LF82]
 gi|226902152|gb|EEH88411.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|242375927|emb|CAQ30608.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli BL21(DE3)]
 gi|253325923|gb|ACT30525.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972114|gb|ACT37785.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|253976323|gb|ACT41993.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli BL21(DE3)]
 gi|254590628|gb|ACT69989.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|257757474|dbj|BAI28971.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257762600|dbj|BAI34095.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281177311|dbj|BAI53641.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE15]
 gi|284919871|emb|CBG32926.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli 042]
 gi|290760789|gb|ADD54750.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|291321204|gb|EFE60646.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|291430685|gb|EFF03683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|294492769|gb|ADE91525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli IHE3034]
 gi|300299669|gb|EFJ56054.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|300409030|gb|EFJ92568.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|300456555|gb|EFK20048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300460442|gb|EFK23935.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300525504|gb|EFK46573.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300531336|gb|EFK52398.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|305850973|gb|EFM51428.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|307629665|gb|ADN73969.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UM146]
 gi|312289462|gb|EFR17356.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|312944697|gb|ADR25524.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315285163|gb|EFU44608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 110-3]
 gi|315294714|gb|EFU54057.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 153-1]
 gi|315300008|gb|EFU59246.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 16-3]
 gi|320179653|gb|EFW54602.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii ATCC 9905]
 gi|320190386|gb|EFW65036.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197458|gb|EFW72072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli WV_060327]
 gi|320642130|gb|EFX11481.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. G5101]
 gi|320647493|gb|EFX16288.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. 493-89]
 gi|320652827|gb|EFX21065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. H 2687]
 gi|320658216|gb|EFX25945.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663525|gb|EFX30809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668837|gb|EFX35632.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323160111|gb|EFZ46072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E128010]
 gi|323171254|gb|EFZ56902.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli LT-68]
 gi|323176399|gb|EFZ61991.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1180]
 gi|323935143|gb|EGB31510.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1520]
 gi|323945720|gb|EGB41768.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H120]
 gi|323950913|gb|EGB46790.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H252]
 gi|323955289|gb|EGB51062.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H263]
 gi|323960037|gb|EGB55683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H489]
 gi|323964813|gb|EGB60280.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli M863]
 gi|323970763|gb|EGB66017.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TA007]
 gi|323975745|gb|EGB70841.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TW10509]
 gi|324008326|gb|EGB77545.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 57-2]
 gi|324118441|gb|EGC12335.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1167]
 gi|326345189|gb|EGD68932.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1125]
 gi|326346957|gb|EGD70691.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1044]
 gi|327255069|gb|EGE66672.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli STEC_7v]
 gi|331052179|gb|EGI24218.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331066539|gb|EGI38416.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331072128|gb|EGI43464.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332095382|gb|EGJ00405.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 5216-82]
 gi|332097809|gb|EGJ02782.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 155-74]
 gi|332103573|gb|EGJ06919.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|332341423|gb|AEE54757.1| UDP-N-acetylmuramate--alanine ligase MurC [Escherichia coli UMNK88]
          Length = 491

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|74310710|ref|YP_309129.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sonnei Ss046]
 gi|109892739|sp|Q3Z5R8|MURC_SHISS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|73854187|gb|AAZ86894.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella sonnei Ss046]
 gi|323165974|gb|EFZ51754.1| UDP-N-acetylmuramate--alanine ligase [Shigella sonnei 53G]
          Length = 491

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|163846031|ref|YP_001634075.1| FolC bifunctional protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523759|ref|YP_002568229.1| FolC bifunctional protein [Chloroflexus sp. Y-400-fl]
 gi|163667320|gb|ABY33686.1| FolC bifunctional protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447638|gb|ACM51904.1| FolC bifunctional protein [Chloroflexus sp. Y-400-fl]
          Length = 438

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 21/173 (12%)

Query: 306 LPGEFQVYNALVAAGLCI-----AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           L G FQ  NA +A G  +      + ID   +   L +    PGRFE +    R   I +
Sbjct: 259 LRGGFQRENARLAMGTALLLRDQGVPIDDQAIRRGLAEAWW-PGRFELIAGPPR---ILI 314

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           D AH  +S + + + I   +   + I+V G   D+D     I   +A   A + I   ++
Sbjct: 315 DGAHNGDSAQKLWQAISDELPHRQFILVLGTSRDKDIAA--IAAALAPQAAHVIITRSNH 372

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGK 467
           P++ D ++I AE+      F     +I     EA+ TA  +  + D++ V G 
Sbjct: 373 PKAMDLDRIAAEVAP----FTNAPMQIVPVVAEALATAQALAEQDDLICVTGS 421


>gi|325929133|ref|ZP_08190278.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
 gi|325540485|gb|EGD12082.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
          Length = 339

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 15/184 (8%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGC 265
             NL  DH D      A      R F  L+   P     I+  +DA+  EV+      GC
Sbjct: 71  LNNLEYDHADIFPDVAAI----QRQFHHLVRTVPARGRLIVNGEDAHLAEVLA----MGC 122

Query: 266 R--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V   G+        ++ A        +    +     +PL G   V N L A     
Sbjct: 123 WTPVERFGFDASLDWSARLIAADGSAFAVLHRGVEIGQVQWPLVGRHNVLNGLAALAAVQ 182

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
           A+G+D A V+  L +   V  R E +G+ +R   +Y D+AH   ++   L+ +R  + + 
Sbjct: 183 AVGVDPATVMPALAQFQSVKRRLEVIGS-ARAITVYDDFAHHPTAIATTLQGLRAKVGAA 241

Query: 383 RIIV 386
           R++V
Sbjct: 242 RVVV 245


>gi|320536303|ref|ZP_08036346.1| protein FolC [Treponema phagedenis F0421]
 gi|320146863|gb|EFW38436.1| protein FolC [Treponema phagedenis F0421]
          Length = 452

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 26/113 (23%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P RFE V    +   I VD AHT NS+   L    +I   + I++F C  D+   +  
Sbjct: 307 TLPARFEVV---QKEPLIVVDGAHTKNSIAGTLATFLSIAPEKFILLFACAEDKSSEE-- 361

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
               + L+ A                   AEI   IPG  +K N  E  R A 
Sbjct: 362 -FAPLFLNHA-------------------AEIFLTIPGVFKKSN-FERTRKAF 393


>gi|302344984|ref|YP_003813337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
 gi|302150055|gb|ADK96317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
          Length = 443

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 124/313 (39%), Gaps = 39/313 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   +  G    I +         P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKDAG---YDAGLAGNIGNSLALQVAEDPHEYYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D Y    + Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYDFRANIAILLNITPDHLDRYDYKFENYADAKMRIIQ 202

Query: 236 ELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               KE   I + DD    KE+ K   +A C   S   +   I   +      +Q    +
Sbjct: 203 NQT-KEDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKEKGSIGYIEEGQYTIEQPEPFN 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +E +D      L G   +YN+L AAG+   I GI    + + L     V  R E V    
Sbjct: 262 MEQED----LSLTGRHNIYNSL-AAGIASDISGIKKENIRKSLSDFPGVEHRLEKVC--K 314

Query: 354 RGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             G  Y++ +  +N  +    L+++RT T    I++ G G D+      I   +    A 
Sbjct: 315 VAGVQYINDSKATNVDACWYALESMRTPT----ILIIG-GKDKGNDYNSIKDLVKQKCAG 369

Query: 412 IAIVTDDNPRSED 424
           I  +  DN +  D
Sbjct: 370 IVYLGADNKKLHD 382


>gi|261340708|ref|ZP_05968566.1| FolC protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317124|gb|EFC56062.1| FolC protein [Enterobacter cancerogenus ATCC 35316]
          Length = 422

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKR 399
           ++PGRF+ V   S   R+ +D AH  ++   +   ++++  +G++  V G   D+D G  
Sbjct: 285 ILPGRFQIV---SESPRLILDVAHNPHAAAYLAGRLKSLPKTGQVRAVIGMLHDKDIGGT 341

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
               +  +D    A +  + PR    E++ A +  G        + +EA   A+     +
Sbjct: 342 LACMESVVDSWYCAPL--EGPRGATAEQLMAHLGEGK----AYASVVEAWHAAMADAKPE 395

Query: 460 DVLVVAGKGHETVHIV 475
           D ++V G  H   H++
Sbjct: 396 DTVLVCGSFHTVAHVM 411


>gi|195387642|ref|XP_002052503.1| GJ21247 [Drosophila virilis]
 gi|194148960|gb|EDW64658.1| GJ21247 [Drosophila virilis]
          Length = 341

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            I+A W+F AI+   +DG+  IP       E++V+   +  +D++  +       ++D  
Sbjct: 215 RIKANWVFAAILDESDDGNYIIPN-----TESVVLGGTHQEKDYNTKVSDVDKRFIIDGC 269

Query: 99  RKFL 102
           R+ +
Sbjct: 270 RRLM 273


>gi|153813010|ref|ZP_01965678.1| hypothetical protein RUMOBE_03418 [Ruminococcus obeum ATCC 29174]
 gi|149830957|gb|EDM86047.1| hypothetical protein RUMOBE_03418 [Ruminococcus obeum ATCC 29174]
          Length = 287

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 42/251 (16%)

Query: 264 GCRVLSVGYQGKFIH-LKKVCA----------IHNKQQVTISVEGKDFDFL-----FPLP 307
           GC V++VG Q + +  +++VC           +H  + V     G+  ++        L 
Sbjct: 48  GCSVVTVGQQPETMAVIERVCRENGADLTEADLHEAKAVKEDFAGQTLEYRGENYELALA 107

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-------- 359
           G +Q  NA        A+ +++  VL  +     V  R + +      GR+         
Sbjct: 108 GSYQTENA--------ALALEALEVLGRVGYPTTVEQRKKGLKDTKWNGRLTIIHREPLF 159

Query: 360 -VDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLAD--IAIV 415
            VD AH   + +M+  ++R    GR +  + G   D+D    P + +     A+  I I 
Sbjct: 160 IVDGAHNPAAADMLEDSVRKYFKGRKLFFIMGVFRDKDY---PYIIRKLCPYAEQIITIE 216

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH---ETV 472
           T DNPR+   +++  E+    P      +  +A+     M  ++DV++  G      E  
Sbjct: 217 TPDNPRALPAQELAEEVKKCNPHVQAADSIPDAVDKIFAMAGREDVILSFGSLSFIGEIT 276

Query: 473 HIVTNGEKKMS 483
            IV   E+K S
Sbjct: 277 TIVKTQEEKNS 287


>gi|110804155|ref|YP_687675.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 5 str.
           8401]
 gi|123343170|sp|Q0T8A6|MURC_SHIF8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110613703|gb|ABF02370.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|332762093|gb|EGJ92362.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 4343-70]
 gi|333009336|gb|EGK28792.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-218]
 gi|333010587|gb|EGK30020.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri VA-6]
 gi|333011479|gb|EGK30893.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-272]
 gi|333021722|gb|EGK40971.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-227]
          Length = 491

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|68249685|ref|YP_248797.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 86-028NP]
 gi|260581815|ref|ZP_05849611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|81174949|sp|Q4QLG0|MURD_HAEI8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68057884|gb|AAX88137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           influenzae 86-028NP]
 gi|260095008|gb|EEW78900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|309973397|gb|ADO96598.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2846]
          Length = 437

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 40/237 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGV---KVGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 148 LNEDCELYV-LELSSFQLETTY--SLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN 204

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +L  E        +  +++ +  A N      S  Y  K  + K+   +  K +V 
Sbjct: 205 AEVGVLNNEDKLTFGEGENQARQTVSFAEN------SADYWLKTENGKQYLMV--KDEVI 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  E         L G     N L A  L  A+GI+   +   L     +  RF+ V
Sbjct: 257 LPCEE------VTLVGRHNYMNILAATALAQAVGINLDSIRTALRHFKGLDHRFQLV 307


>gi|312970185|ref|ZP_07784367.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
 gi|310337683|gb|EFQ02794.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
          Length = 491

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|228967559|ref|ZP_04128585.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792138|gb|EEM39714.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 442

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 27/203 (13%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDS 329
           K   A+H + +     +G++FDF  P          + G  QV NA +A    + +    
Sbjct: 235 KHFTALHKQSKE----DGEEFDFTCPFAAFEDLQISMKGIHQVGNAALALMAVMYVKTYL 290

Query: 330 ALVLEHLE-----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGR 383
           + ++E  E     +     GRFE + +N     I +D AH    +E ++K +        
Sbjct: 291 SFLIEEEEIRTGLREAYWIGRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKN 347

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +IV+F   GD+      ++G++     +I   T    R+   +K+ +          E  
Sbjct: 348 VIVLFTALGDKQL--HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE-- 403

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           N  EAI T +EM+ + DV ++ G
Sbjct: 404 NWKEAIDTKVEMIGENDVFIITG 426


>gi|307708397|ref|ZP_07644863.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis NCTC
           12261]
 gi|307615496|gb|EFN94703.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis NCTC
           12261]
          Length = 444

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + IY +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFIYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G      ++         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASELLRSTTGSTFTVHFRGQELGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  L+ EHL+    V  RF
Sbjct: 284 DLNLLREHLKTFAGVKRRF 302


>gi|262276881|ref|ZP_06054674.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium
           HIMB114]
 gi|262223984|gb|EEY74443.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium
           HIMB114]
          Length = 463

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 11/186 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +N+  +H+DY++T Q   N+  + F    P     I+  DD   K+++K         L+
Sbjct: 183 SNIDIEHMDYYKTTQNLINS-FKFFLNKTPLLGKNIVCIDDLNIKKLIKEIDKKN--FLT 239

Query: 270 VGY-QGKFIHLKKVCAIH--NKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCI 323
            G+ +   +  K +  +    K  ++I+  GK     +    L G+  V NA     + +
Sbjct: 240 YGFAKNANLQCKNIRNVDMGMKFDISINSSGKKKLVKNIFINLLGKHNVLNATATFAIGL 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSG 382
            + I    + + L     V  R   +  N +   IY DYAH    ++ +L   +    + 
Sbjct: 300 LLNIKIERIKKSLSSFSGVQRRLTLIYENKK-SLIYDDYAHHPTEIKAVLSACKNNFKNK 358

Query: 383 RIIVVF 388
           +II +F
Sbjct: 359 KIIAIF 364


>gi|213019092|ref|ZP_03334899.1| murC-like protein [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|212995201|gb|EEB55842.1| murC-like protein [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 332

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G  ++ NAL A  + + +GI    + + L +   V  RF  +  + +G ++  DYAH  N
Sbjct: 149 GMHKISNALAAISVAVKLGISDEEIKKGLLEFKGVARRFSLIA-DIKGVKLIEDYAHHPN 207

Query: 368 SLEMILKNIRTITSGRI 384
            ++  L   R  T G++
Sbjct: 208 EIQATLSAARLTTKGKV 224


>gi|23098924|ref|NP_692390.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Oceanobacillus iheyensis HTE831]
 gi|30316035|sp|Q8ER50|MURD_OCEIH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22777152|dbj|BAC13425.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oceanobacillus
           iheyensis HTE831]
          Length = 449

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 109/293 (37%), Gaps = 63/293 (21%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           ++ +TG++GK++  + + ++  RS +S     +  +  T   SS   D ++         
Sbjct: 113 VIGITGSNGKTTTTTLITEMLDRSNVSVKVAGNIGVVATEVASSLQSDEKMVME------ 166

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS    QG+                 D ++       NL   H+DYH + + Y  AK 
Sbjct: 167 --LSSFQLQGI-----------------DQLQFSTAVLLNLFEAHLDYHGSFENYVEAKC 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHN-----AGCRVLSVG--YQGKFIHLK--KV 282
            +F+    K    I  ADD      +K A       +  R L+ G      F++ K  K+
Sbjct: 208 NIFKS-QNKHDYLIYNADDDNVSAAIKTAEATKVPFSSSRPLADGAWMDDDFLYYKDEKI 266

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            AI +                  L G+  + N L A       G  +  +++ L     V
Sbjct: 267 IAIRD----------------IVLVGKHNMENILAAIATAKLNGATNEGIVQVLTTFSGV 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDR 394
             R EFVG    G  IY D   T+     IL   + + +  + +V+   G DR
Sbjct: 311 KHRLEFVGV-INGRYIYNDSKATN-----ILATKKALAAFNKNVVLLAGGLDR 357


>gi|125972961|ref|YP_001036871.1| hypothetical protein Cthe_0440 [Clostridium thermocellum ATCC
           27405]
 gi|256004758|ref|ZP_05429733.1| protein of unknown function DUF1727 [Clostridium thermocellum DSM
           2360]
 gi|281417173|ref|ZP_06248193.1| protein of unknown function DUF1727 [Clostridium thermocellum JW20]
 gi|125713186|gb|ABN51678.1| Domain of unknown function DUF1727 [Clostridium thermocellum ATCC
           27405]
 gi|255991208|gb|EEU01315.1| protein of unknown function DUF1727 [Clostridium thermocellum DSM
           2360]
 gi|281408575|gb|EFB38833.1| protein of unknown function DUF1727 [Clostridium thermocellum JW20]
 gi|316940802|gb|ADU74836.1| domain of unknown function DUF1727 [Clostridium thermocellum DSM
           1313]
          Length = 467

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 19/156 (12%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ R+ I Y  +++AY N+       ++  ++   +Y    Y        H  G    + 
Sbjct: 181 NMDREAIYYGFSEEAYNNSST-----VVNSDASICLYCKSKYEYSYNVYGHLGGFSCPNC 235

Query: 271 GYQGKFIHLKKVCAIHNKQQVTIS--------VEGKD----FDFLFPLPGEFQVYNALVA 318
           GY       K  C   N+   + S        ++G D    ++    LPG + +YNAL A
Sbjct: 236 GYMRP--DSKVTCVKINELNTSYSDIIFSLSPIKGNDEPVSYNARINLPGLYNIYNALAA 293

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           A L    G     +++ +E      GR E + T+ +
Sbjct: 294 ASLGHLSGFSPESLVKAMESFECGFGRMETIETDGK 329


>gi|16128084|ref|NP_414633.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89106974|ref|AP_000754.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170021553|ref|YP_001726507.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ATCC 8739]
 gi|170079730|ref|YP_001729050.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188495590|ref|ZP_03002860.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|238899492|ref|YP_002925288.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|254037506|ref|ZP_04871583.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|256025405|ref|ZP_05439270.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia sp. 4_1_40B]
 gi|300905500|ref|ZP_07123264.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300919646|ref|ZP_07136137.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300923127|ref|ZP_07139187.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300949891|ref|ZP_07163854.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300955957|ref|ZP_07168290.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|301028574|ref|ZP_07191804.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|301303808|ref|ZP_07209928.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|301330128|ref|ZP_07222797.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301646403|ref|ZP_07246285.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|307136692|ref|ZP_07496048.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli H736]
 gi|331640544|ref|ZP_08341692.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|127536|sp|P17952|MURC_ECOLI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028987|sp|B1IR87|MURC_ECOLC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620033|sp|B1XC68|MURC_ECODH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509769|sp|C4ZRI6|MURC_ECOBW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|40859|emb|CAA38868.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli]
 gi|42056|emb|CAA36868.1| (UDP-N-acetylmuramate: L-alanine ligase) (AA 1-491) [Escherichia
           coli]
 gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|21321972|dbj|BAB96659.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169756481|gb|ACA79180.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli ATCC 8739]
 gi|169887565|gb|ACB01272.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188490789|gb|EDU65892.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|226840612|gb|EEH72614.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|238863750|gb|ACR65748.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|260450702|gb|ACX41124.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli DH1]
 gi|299878385|gb|EFI86596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|300317177|gb|EFJ66961.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|300402650|gb|EFJ86188.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300413286|gb|EFJ96596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300420582|gb|EFK03893.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300450723|gb|EFK14343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300840935|gb|EFK68695.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|300843875|gb|EFK71635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301075373|gb|EFK90179.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|309700302|emb|CBI99590.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli ETEC H10407]
 gi|315134785|dbj|BAJ41944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli DH1]
 gi|315253165|gb|EFU33133.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 85-1]
 gi|315616130|gb|EFU96749.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 3431]
 gi|323939869|gb|EGB36069.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E482]
 gi|331040290|gb|EGI12497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|228660|prf||1808265A murC gene
          Length = 491

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|260853304|ref|YP_003227195.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257751953|dbj|BAI23455.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|323157842|gb|EFZ43945.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EPECa14]
          Length = 491

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|16127274|ref|NP_421838.1| dihydroxy-acid dehydratase [Caulobacter crescentus CB15]
 gi|221236075|ref|YP_002518512.1| dihydroxy-acid dehydratase [Caulobacter crescentus NA1000]
 gi|13638233|sp|P55186|ILVD_CAUCR RecName: Full=Dihydroxy-acid dehydratase; Short=DAD
 gi|254805977|sp|B8H367|ILVD_CAUCN RecName: Full=Dihydroxy-acid dehydratase; Short=DAD
 gi|13424688|gb|AAK25006.1| dihydroxy-acid dehydratase [Caulobacter crescentus CB15]
 gi|220965248|gb|ACL96604.1| dihydroxy-acid dehydratase [Caulobacter crescentus NA1000]
          Length = 617

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 15/109 (13%)

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I +D  + + H   L+ +P R + +  +      Y+  AH ++++ + + N   IT G +
Sbjct: 77  IAVDDGIAMGHGGMLYSLPSR-DLIADSVE----YMVNAHCADAI-VCISNCDKITPGML 130

Query: 385 I--------VVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
           +        VVF  GG  + GK  + GKI ALDL D  +V  D+  S++
Sbjct: 131 MAAMRLNIPVVFVSGGPMEAGKVTVKGKIRALDLVDAMVVAADDSYSDE 179


>gi|268318243|ref|YP_003291962.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
 gi|262335777|gb|ACY49574.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
          Length = 455

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 44/290 (15%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALS 175
           I+AVTGT+GK++  S +  I +R+G  +   G      S +  D   TTP  +       
Sbjct: 110 IVAVTGTNGKTTTTSLIGYIFRRAGRRTIVAGNIGYPFSDYVLD---TTPDDV------- 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
                    V +E SS  LD   +   +       N+  DH+D Y+     Y  +K R+F
Sbjct: 160 ---------VVLEVSSFQLDH--VATFRPRVSVLLNITPDHLDRYNYNFNEYAQSKFRIF 208

Query: 235 EELLPKESPAIIYA-DDAYSKEVMKRAHNA-GCRVLSVGYQ-----GKFIHLKKVCAIHN 287
                +    ++Y  DD   +   +RAH   G RVL    +     G F+       +  
Sbjct: 209 AN--QRGEDVLVYNHDDELIRMAAERAHRKRGLRVLGFSQRTELPAGAFVR-DGYLILRI 265

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +QQ  + +   +      L G   +YN+L AA     + + + +V E L     VP R E
Sbjct: 266 EQQEEVLMHANE----LALRGRHNLYNSLAAAVAARVMEVRNDVVRESLASFEGVPHRLE 321

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           FV      G  YV+ +  +N +  +   + + +   +++     G RD+G
Sbjct: 322 FV--RELDGVRYVNDSKATN-VNAVWYALESFSCPIVLI----AGGRDKG 364


>gi|225619677|ref|YP_002720934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225214496|gb|ACN83230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 450

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 32  EVSSDSR-HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           E+S+DSR +     +F+AI G K DG+ F  +   +G    ++S A      S  +  + 
Sbjct: 34  EISTDSRDNFDENKLFLAIKGEKFDGNKFALETYNKGCRYFILSDA------SIKLPDDA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +   D+T  F    A     +    ++++TG+ GK++ 
Sbjct: 88  VVFYADDTILFFIKLAREYRRRFNIPVISITGSCGKTTT 126


>gi|145627896|ref|ZP_01783697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145639344|ref|ZP_01794950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|144979671|gb|EDJ89330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145271647|gb|EDK11558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|309751218|gb|ADO81202.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2866]
          Length = 437

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 40/237 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGV---KVGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 148 LNEDCELYV-LELSSFQLETTY--SLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLRIYHN 204

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +L  E       ++  +K  +  A N      S  Y  K  + K+   +  K +V 
Sbjct: 205 AKVGVLNNEDRLTFGENENQAKHTVSFAEN------SADYWLKTENGKQYLMV--KDEVI 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  E         L G     N L A  L  AIGI+   +   L     +  RF+ V
Sbjct: 257 LPCEEA------TLVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLV 307


>gi|332976288|gb|EGK13148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 463

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 142/345 (41%), Gaps = 38/345 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS+D+R +Q   ++V + G + DGH F   A+  GA A + +    L          
Sbjct: 27  VDGVSTDTRTLQRNNLYVPLKGERFDGHAFWMDAVRAGAAAALWNREVPLPKDPP----- 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V++T   L   A+    +    ++ +TG++GK++       I      + +++  
Sbjct: 82  IPLIQVEDTLIALQELAAGYRRELEVKVVGITGSNGKTTTKDLTAAILA----TRYRVHR 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIAG 207
           T        +N +  P        L+ LS    T V+V     +H  +  RL  I     
Sbjct: 138 TQG----NLNNHIGLP--------LTLLSMPPDTEVAVVEMGMNHAGEIARLSKIAAPDL 185

Query: 208 SF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           +  TN+G  H+++  ++ A  +AK+ +  E +P     II  D+   +E +         
Sbjct: 186 ALVTNIGEAHLEFLGSRGAIADAKLEI-REGMPSTGTLIIDGDEPLLRERLAGEERP--- 241

Query: 267 VLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           V+ VG+      + + L+    +  +  +  +    D  F   L G+    NAL+     
Sbjct: 242 VIRVGFGESNDDRILDLE----LKGRAGIAFTSSATDTRFETGLMGKHNALNALLGIQAA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             +G+    + E L+       R E   + +  G + VD ++ ++
Sbjct: 298 RLLGLTETGIREGLKGAEGSGRRLET--STASNGMLVVDDSYNAS 340


>gi|297379937|gb|ADI34824.1| Hypothetical protein HPV225_0748 [Helicobacter pylori v225d]
          Length = 493

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 146/336 (43%), Gaps = 68/336 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKAL 174
           ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D    L   S IY+A+A 
Sbjct: 170 VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDDRSEIYIAEAG 229

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   ++G     ++  +H ++ H    + ++A     +G  H++Y +T +     K  L 
Sbjct: 230 A--RNKG----DIKEITHLIEPH----LAVVA----EVGEQHLEYFKTLENICETKAELL 275

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVT 292
           +                      KR   A C  +     Y  K   L    ++    Q T
Sbjct: 276 DS---------------------KRLEKAFCYSVEKIKPYAPKDSPLIDYSSLVKNIQST 314

Query: 293 ISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHV 341
           +  +G  F+ L           + G+F  YN  +A+ + IA  +G+++  +   + +L+ 
Sbjct: 315 L--KGTSFEMLIGSVWESFETKVLGKFNAYN--IASAILIAKHLGLETERIKRLVWELNP 370

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGR-IIVVFGCGGDRDQGK 398
           +  R + +  N    +I +D +   N L+ +L+ IR  ++  GR +IV  G      +  
Sbjct: 371 IAHRLQLLEVNQ---KIIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESN 426

Query: 399 RPIMGKIALDLADIAIVTDD-NPRS-----EDPEKI 428
             +  KI  ++ D+AI+T + N ++     + P+KI
Sbjct: 427 ETLAQKID-EVFDVAIITGELNSKTIASQLKTPQKI 461


>gi|145641278|ref|ZP_01796858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|145274115|gb|EDK13981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.4-21]
          Length = 437

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 40/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGV---KVGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 148 LNEDCELYV-LELSSFQLETTY--SLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN 204

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +L  E       ++  +K  +  A N      S  Y  K  + K+   +  K +V 
Sbjct: 205 AKVGVLNNEDRLTFGENENQAKHTVSFAEN------SADYWLKTENGKQYLMV--KDEVI 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  E         L G     N L A  L  AIGI+   +   L     +  RF+ 
Sbjct: 257 LPCEEA------TLVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQL 306


>gi|312885129|ref|ZP_07744813.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367202|gb|EFP94770.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 489

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 142/364 (39%), Gaps = 59/364 (16%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS------NTPILVVDNTR--- 99
           I G+    +L       +GA+  +  SA ++ D S  + S      N  I+     R   
Sbjct: 49  ITGSDITANLVTDNLSQKGAKVYIGHSADNISDASVVVISTAIDDHNPEIIAARQARIPI 108

Query: 100 -KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFA 157
            +   + A  +  +H    +A+ GT GK++  + V QI   +GL  +F  G    + S  
Sbjct: 109 VRRAEMLAELMRFRHG---IAIAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAG 163

Query: 158 QDNRLTTPSPIYLAKA----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
              RL + S I +A+A     S+L  Q +  +     +  +D +        AG F  L 
Sbjct: 164 ASARLGS-SRILIAEADESDASFLHLQPMVSIVTNIEADHMDTY--------AGDFEKLK 214

Query: 214 RDHIDYHQTQQAYFNAKM----RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +  ID+      Y  A +     +  +L+PK S  +I     +S+    R  N       
Sbjct: 215 QTFIDFLHNLPFYGQAIVCIDDPIVRDLIPKISRQVITY--GFSEHADVRIEN----YHQ 268

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G+QG+F               T+  EGK   D    +PG     NA  A  +     I 
Sbjct: 269 TGHQGQF---------------TVVREGKPLLDITLNIPGRHNALNAAAAIAVATEDDIK 313

Query: 329 SALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRI 384
              +L  +        RFE +G  ++  G++ +  DY H    +++ ++  R      R+
Sbjct: 314 DEAILSAMASTQGTGRRFEHLGEFDTDKGQVMLVDDYGHHPTEVDVTIQAARNGWPQSRL 373

Query: 385 IVVF 388
           ++++
Sbjct: 374 VMIY 377


>gi|254372509|ref|ZP_04987998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570236|gb|EDN35890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3549]
          Length = 417

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 118/287 (41%), Gaps = 54/287 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GKS+V +    + +  G  S  +G             + TP+   + +   Y 
Sbjct: 100 IAVTGSNGKSTVVTMTDFVLKDLGYKSILVG------------NIGTPALNKIGEKFDY- 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS  +D    + ++   G   N+  DH+D +Q  + Y  +K+ L +  
Sbjct: 147 -------CVVEVSSFQID--LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAK-- 195

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                    +++D +  +V    HN G +     Y G++  + +     N  ++    E 
Sbjct: 196 ---------FSNDFFVYDV----HNNGIK-----YAGEY-QIIRGAIYRNSTKLLDIAET 236

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K F       GE  + N +V   +   +G+D    ++ ++K   +  R + V      G 
Sbjct: 237 KLF-------GEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKIV--KKVNGT 287

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            Y++ +  +N +   +  + +IT+ + I++   GG    G   +M K
Sbjct: 288 TYINDSKGTN-VGATIAALNSITNSKNIILL-LGGVAKGGDFSLMIK 332


>gi|15903416|ref|NP_358966.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           R6]
 gi|116515384|ref|YP_816811.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           D39]
 gi|148984866|ref|ZP_01818119.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP3-BS71]
 gi|149003263|ref|ZP_01828159.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007572|ref|ZP_01831207.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP18-BS74]
 gi|149011756|ref|ZP_01832952.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP19-BS75]
 gi|168487491|ref|ZP_02711999.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1087-00]
 gi|168491587|ref|ZP_02715730.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC0288-04]
 gi|182684476|ref|YP_001836223.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CGSP14]
 gi|194398270|ref|YP_002038152.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           G54]
 gi|225861354|ref|YP_002742863.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650203|ref|ZP_04524455.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CCRI 1974]
 gi|237820914|ref|ZP_04596759.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298230253|ref|ZP_06963934.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298254457|ref|ZP_06978043.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503257|ref|YP_003725197.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255306|ref|ZP_07341376.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS455]
 gi|303260146|ref|ZP_07346118.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP-BS293]
 gi|303262536|ref|ZP_07348477.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264938|ref|ZP_07350853.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS397]
 gi|303267248|ref|ZP_07353112.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS457]
 gi|303269558|ref|ZP_07355321.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS458]
 gi|32171458|sp|Q8DP40|MURC_STRR6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122277691|sp|Q04HS5|MURC_STRP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706331|sp|B5E685|MURC_STRP4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620434|sp|B2IQY8|MURC_STRPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766028|sp|C1CSE1|MURC_STRZT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15459022|gb|AAL00177.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus pneumoniae R6]
 gi|116075960|gb|ABJ53680.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae D39]
 gi|147758723|gb|EDK65720.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760931|gb|EDK67901.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147764187|gb|EDK71119.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922888|gb|EDK74004.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP3-BS71]
 gi|182629810|gb|ACB90758.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CGSP14]
 gi|183569685|gb|EDT90213.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574271|gb|EDT94799.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC0288-04]
 gi|194357937|gb|ACF56385.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae G54]
 gi|225726468|gb|ACO22319.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238852|gb|ADI69983.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301800356|emb|CBW32986.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           OXC141]
 gi|301802241|emb|CBW34992.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           INV200]
 gi|302597674|gb|EFL64750.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS455]
 gi|302636253|gb|EFL66747.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638643|gb|EFL69106.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP-BS293]
 gi|302640902|gb|EFL71286.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS458]
 gi|302643213|gb|EFL73496.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS457]
 gi|302645457|gb|EFL75689.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS397]
 gi|327389706|gb|EGE88051.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA04375]
 gi|332073857|gb|EGI84335.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA41301]
 gi|332074274|gb|EGI84751.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA17545]
 gi|332199565|gb|EGJ13640.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA41317]
          Length = 444

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|326803163|ref|YP_004320981.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650206|gb|AEA00389.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 452

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 111/328 (33%), Gaps = 60/328 (18%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F P  I +G   ++  +A+   D    +R+    L V     FL     +         +
Sbjct: 56  FDPDNIHEGM-TVICGNAFK-DDHPEVVRAKELGLTVIRYHYFLGELIKKY------TSV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG+ GK+S    +  +      +S+ IG   T             +  Y    L+Y  
Sbjct: 108 AITGSHGKTSTTGLMSHVLGSLKTTSYLIGD-GTGKGVEDGEYFVLEADEYREHFLAYEP 166

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +                          FTN+  DH D++   +  F A  +   ++ 
Sbjct: 167 DYAI--------------------------FTNIDFDHPDFYHNIEEVFAANRKFAHQVK 200

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KF-IHLKKVCAIHNKQQVTI 293
            K    I Y DD Y +++           + V Y G     F I  K +          +
Sbjct: 201 NK---VIAYGDDPYLQKLKDE--------VDVWYYGIDNDDFDIVAKDIVRNTKGSHFDV 249

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V+GK + +F     G+  + N+L   G C   G D   V E L     V  RF     N
Sbjct: 250 WVQGKHYGNFSIHTFGQHSILNSLAVIGFCYLEGFDPEDVQEALTSFKGVKRRF-----N 304

Query: 353 SRGGRIYV---DYAHTSNSLEMILKNIR 377
            R     V   DYAH  + ++  +   R
Sbjct: 305 ERFVEDMVIVDDYAHHPSEIKATIDAAR 332


>gi|167031608|ref|YP_001666839.1| UDP-N-acetylmuramate [Pseudomonas putida GB-1]
 gi|166858096|gb|ABY96503.1| UDP-N-acetylmuramate [Pseudomonas putida GB-1]
          Length = 449

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 106/274 (38%), Gaps = 46/274 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++ +S +  + + +G+S  F IG      +F+   RL   +P ++ +A  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIG--GVPQNFSVSARLGD-TPFFVVEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+        +  S  +  H    I        NL  DH D      A    +     
Sbjct: 162 YDSA------FFDKRSKFVHYHPRTAI------LNNLEFDHADIF-PDLASIERQFHHLV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +P E   I       +++ ++R    GC   V + G  G++            Q   +
Sbjct: 209 RTIPSEGLVI----HPTTEQALERVIGMGCWTPVQTTGEGGQW------------QARLL 252

Query: 294 SVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           S +G  F+ LF           L G+  V NAL        +G+  A+ +  L     V 
Sbjct: 253 SPDGSRFEVLFEGEAQGVVDWALTGQHNVANALATLAAARHVGVVPAMGIAGLSAFKSVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            R E V    +G  IY D+AH   ++   L  +R
Sbjct: 313 RRMEKV-AEVQGVTIYDDFAHHPTAIATTLDGLR 345


>gi|256846972|ref|ZP_05552418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715636|gb|EEU30611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 457

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 52/195 (26%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           Y +   +A ++  TPI+         +     ++  H   +++VTG++GK++  + +Q++
Sbjct: 84  YDVPLVAAFVKKGTPIITE-------AELGYEIFSGH---LVSVTGSNGKTTTTTLIQKM 133

Query: 137 CQRSGLS-------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT----HV 185
              +GLS       +  +  T T    + D+        YL   LS     G      H+
Sbjct: 134 LD-AGLSHIAKYAGNIGVSFTKTAQELSADD--------YLVTELSSFQLLGTPDLHPHI 184

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +V                      TN+  +H+DYH+T++ Y NAK+ +      K+   I
Sbjct: 185 AV---------------------ITNIFANHLDYHKTRENYINAKLNITRNQT-KDDYLI 222

Query: 246 IYADDAYSKEVMKRA 260
           +  D    +E+ +R+
Sbjct: 223 MNWDRDEWQEIARRS 237


>gi|221213281|ref|ZP_03586256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
 gi|221166733|gb|EED99204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
          Length = 468

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 151/386 (39%), Gaps = 58/386 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR + AG +FVA+ G + D H F+          +    A +     A      P+
Sbjct: 29  VSTDSRTVGAGDLFVALKGERFDAHDFL--------ADVAARGAAAALVAQAPAGVALPM 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V   TR  L   A     +    ++AVTG++GK++V   +  I   +      +G  + 
Sbjct: 81  IVGGETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAA------VGADAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNLNNDVGLPLTLLRLTAAHRLAVIELGMNH---PGETEILARLTAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R+L 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHAL-PPDGVAVFPADDAYAS--IWRVAATGNRILD 244

Query: 270 VGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFP---------LPGEFQVYNA 315
                         A+H+ +     QVT  + G +     P           GE    NA
Sbjct: 245 F-------------ALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEM 371
           L A    +A G+  + + + LE    V GR +       S  G   VD  + +N  S+  
Sbjct: 292 LAATAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRA 351

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG 397
            +  +    + R++V+   G   D+G
Sbjct: 352 AIDVLAAQPAPRVLVIGDMGEVGDEG 377


>gi|224531597|ref|ZP_03672229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511062|gb|EEF81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 463

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 27  ERKINEVSSDSRHIQAGWI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ ++  S DSR I+   I    + A  GNK DG  F+   I  G +  V S  +   + 
Sbjct: 25  EKIVSFYSLDSREIKNDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSRDHE-SEC 83

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  N  +  L+  N  K L   AS L  +     +A+TG++GK++    +  I  +
Sbjct: 84  IEYLNDNEELVFLLTSNVIKLLQTLASCLIERTSFKRIAITGSNGKTTTKEMLYSILSK 142


>gi|148997418|ref|ZP_01825023.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575284|ref|ZP_02721247.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           MLV-016]
 gi|307068165|ref|YP_003877131.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus pneumoniae
           AP200]
 gi|147756473|gb|EDK63514.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578920|gb|EDT99448.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           MLV-016]
 gi|306409702|gb|ADM85129.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus pneumoniae
           AP200]
          Length = 444

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGSDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|21224390|ref|NP_630169.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces coelicolor
           A3(2)]
 gi|6919932|sp|Q9X827|MURC_STRCO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4691386|emb|CAB41553.2| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           coelicolor A3(2)]
          Length = 462

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 154/382 (40%), Gaps = 69/382 (18%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A  A  +VVSSA    +      +   I VV  +    +L    + G  P   +AV GT
Sbjct: 66  LAADASCVVVSSAIREDNPELVRAAELGIPVVHRSDALAAL----MNGLRP---IAVAGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +        LS   +GP     S+A    L  P         + L  +G  
Sbjct: 119 HGKTTTTSMLA-----VSLSELDLGP-----SYAIGGDLDAPGS-------NALHGEGEI 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQTQQAYFNAKMRLFEELLPKES 242
            V+ EA       H+      I     N+  DH  +Y    + Y +     FE    K  
Sbjct: 162 FVA-EADESDRSFHKYAPEVAI---VLNVELDHHANYASMDEIYES-----FETFAGKIV 212

Query: 243 PA---IIYADDAYSKEVMKR------------AHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           P    +I AD   ++E+ +R            + +A  R+LSV  QG             
Sbjct: 213 PGGTLVIAADHEGARELTRRLAGRVRTVTYGESEDADVRILSVVPQGL------------ 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +VT+ ++G +  F   +PG    +NA+ A     A+G+ +A +   L     V  R +
Sbjct: 261 KSEVTVVLDGAELTFAVSVPGRHYAHNAVAALAAGAALGVPAAELAPALAAYTGVKRRLQ 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGC---GGDRDQGKRPIMG 403
             G  + G ++   YAH    +   L+ +R  +   RI+V+F        ++ GK   MG
Sbjct: 321 LKG-EAAGVQVVDSYAHHPTEMTADLEAMRAAVGDARILVLFQPHLFSRTQELGKE--MG 377

Query: 404 KIALDLADIAIVTDDNPRSEDP 425
           + AL LAD ++V D  P  EDP
Sbjct: 378 Q-ALALADASVVLDIYPAREDP 398


>gi|190570659|ref|YP_001975017.1| murC-like protein [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|190356931|emb|CAQ54315.1| murC-like protein [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
          Length = 322

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G  ++ NAL A  + + +GI    + + L +   V  RF  +  + +G ++  DYAH  N
Sbjct: 139 GMHKISNALAAISVAVKLGISDEEIKKGLLEFKGVARRFSLIA-DIKGVKLIEDYAHHPN 197

Query: 368 SLEMILKNIRTITSGRI 384
            ++  L   R  T G++
Sbjct: 198 EIQATLSAARLTTKGKV 214


>gi|119478638|ref|ZP_01618541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
 gi|119448415|gb|EAW29666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
          Length = 453

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 23/119 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-IYLAKALS 175
           I A+TG++GK++V + V  + +R G S+  +G    + +    + L  P P +Y+     
Sbjct: 111 IAAITGSNGKTTVTTLVGLMAERCGRSA-AVGGNIGVPAL---DLLLEPEPDMYV----- 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                      +E SS  L+  R D +   A +  N+  DH+D +     Y  AK R+F
Sbjct: 162 -----------LELSSFQLE--RADVLGFEAATVLNISADHMDRYPDLSTYRRAKYRIF 207


>gi|51246751|ref|YP_066635.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea
           psychrophila LSv54]
 gi|62900515|sp|Q6AJ52|MURD_DESPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50877788|emb|CAG37628.1| related to UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Desulfotalea psychrophila LSv54]
          Length = 456

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 36/128 (28%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GK++V S V  + + SG   F  G                  P+     L  
Sbjct: 116 VVAITGTNGKTTVTSLVGDLLRASGKRVFVGGNIGV--------------PL-----LDL 156

Query: 177 LSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-------NLGRDHIDYHQTQQAYFN 228
           LSS   V  + +E SS  L+         +AG F+       NL  DH+D H     Y  
Sbjct: 157 LSSGDEVDVIVLEVSSFQLE---------LAGDFSPHIALLLNLSPDHLDRHGDLAGYRA 207

Query: 229 AKMRLFEE 236
           AKM LF++
Sbjct: 208 AKMHLFQK 215


>gi|172058141|ref|YP_001814601.1| FolC bifunctional protein [Exiguobacterium sibiricum 255-15]
 gi|171990662|gb|ACB61584.1| FolC bifunctional protein [Exiguobacterium sibiricum 255-15]
          Length = 416

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G  QV+NA  A      +G     +   L      PGRFE +   SR  RI +D AH 
Sbjct: 250 LEGMHQVHNAANAVVCAKQLGWSKTAIRRGLRN-ATHPGRFEII---SRKPRIILDGAHN 305

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +  +++ ++     + +VV  C   RD+ ++ ++ ++     DI   T D PR+   
Sbjct: 306 PEGVTALVERLKE--ESKPVVVL-CSILRDKDRKAMLRQLREVTPDIYETTFDFPRARTL 362

Query: 426 EKI 428
           E++
Sbjct: 363 EEL 365


>gi|300309676|ref|YP_003773768.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Herbaspirillum
           seropedicae SmR1]
 gi|300072461|gb|ADJ61860.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 710

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 102 LSLFASRLYGKHPEN-----ILAVTGTSGKSSVASFVQQICQRSGLS 143
           + LFA  L     E      +LA+TGT+GK++V      +CQR+GLS
Sbjct: 105 IELFAQALVALREETLYQPKVLAITGTNGKTTVTRLTGLLCQRAGLS 151


>gi|254480308|ref|ZP_05093556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
 gi|214039870|gb|EEB80529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
          Length = 455

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++ KS+V   V  + +R+ L+                  L TP       AL  
Sbjct: 117 IIGITGSNAKSTVTELVGDMARRAKLN------------VGVGGNLGTP-------ALDL 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  +   +V +E SS  L+  R   + L      NL  DH+D H     Y  AK R+F  
Sbjct: 158 LDDERQLYV-LELSSFQLE--RAGKLGLAVAVVLNLSADHLDRHGNMPRYHQAKHRIFMG 214

Query: 237 LLPKESPAIIYADDAYSKEVMK 258
                S A+ ++DD  +  +++
Sbjct: 215 C----STAVAHSDDPLTVPLLE 232


>gi|118497141|ref|YP_898191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323439|ref|ZP_03057216.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|254373970|ref|ZP_04989452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|158512419|sp|A0Q5C2|MURD_FRATN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118423047|gb|ABK89437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida U112]
 gi|151571690|gb|EDN37344.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|194322294|gb|EDX19775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|328676610|gb|AEB27480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
           novicida Fx1]
          Length = 417

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 118/287 (41%), Gaps = 54/287 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GKS+V +    + +  G  S  +G             + TP+   + +   Y 
Sbjct: 100 IAVTGSNGKSTVVTMTDFVLKDLGYKSILVG------------NIGTPALNKIGEKFDY- 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS  +D    + ++   G   N+  DH+D +Q  + Y  +K+ L +  
Sbjct: 147 -------CVVEVSSFQID--LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAK-- 195

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                    +++D +  +V    HN G +     Y G++  + +     N  ++    E 
Sbjct: 196 ---------FSNDFFVYDV----HNNGIK-----YAGEY-QIIRGAIYRNSTKLLDIAET 236

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K F       GE  + N +V   +   +G+D    ++ ++K   +  R + V      G 
Sbjct: 237 KLF-------GEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKIV--KKVNGT 287

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            Y++ +  +N +   +  + +IT+ + I++   GG    G   +M K
Sbjct: 288 TYINDSKGTN-VGATIAALNSITNSKNIILL-LGGVAKGGDFSLMIK 332


>gi|301167446|emb|CBW27028.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteriovorax marinus SJ]
          Length = 448

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 46/254 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I++VTGT+GK++  + +  + + +G SSF  G             + TP   Y  + LS 
Sbjct: 115 IISVTGTNGKTTTVTIIDLLARGAGCSSFLGG------------NIGTPLATYALEVLSS 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S+  + +++E SS  L+   +D  K    +  N+  +H + ++    Y  AK  + + 
Sbjct: 163 KRSEA-SLITLELSSFQLES--MDTFKSDVAAILNISANHGERYERVSDYARAKFSIADN 219

Query: 237 LLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           L   +S  I   D   + KE      N  C ++                   K +V  S 
Sbjct: 220 L--DDSDNIFVGDLGGFEKEF-----NPSCNLI-------------------KLEVPRSA 253

Query: 296 E--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +    F L GE  + N   A  L   +G+D    LE L++   V  R +     S
Sbjct: 254 DIFSGNVRESFQLIGEHNLSNLNFATKLLETVGVDWKNGLEQLKEFQGVSYRLQ--KRPS 311

Query: 354 RGGRIYVDYAHTSN 367
           R G    + A ++N
Sbjct: 312 REGLYIFNDAKSTN 325


>gi|291166139|gb|EFE28185.1| tetrahydrofolate synthase [Filifactor alocis ATCC 35896]
          Length = 434

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 30/210 (14%)

Query: 279 LKKVCAIHNKQQVTISVEGKDF--------DFLF-------PLPGEFQVYNALVAAGLC- 322
           LKK C + N + V        F        DF +        L GE Q+YNA+V      
Sbjct: 207 LKKKCKLVNSKLVQPDCTSLQFNTNSFGVCDFSYEGISYKKSLLGEVQLYNAIVVITASK 266

Query: 323 ----IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +   + S  +   +E    +P R E +   S    + +D +H  +    + K + T
Sbjct: 267 ELNQLGFSLPSESICYGVEHT-FIPARMEIL---SESPLVLLDGSHNEDGAIALKKTLAT 322

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIP 437
                I ++ G   D++  K  I+   A  L+DI I V+ ++PR+   +K+ AE+     
Sbjct: 323 FPKTSIKMIMGVLKDKNIYK--ILENTA-TLSDIFIAVSPNHPRALSSKKL-AEVSKQYC 378

Query: 438 GFIEKGNRIE-AIRTAIEMLNKQDVLVVAG 466
             +++ + +E A+ +A   L + D+LV+ G
Sbjct: 379 NNVKQASSLEEAVNSAFLNLKESDILVICG 408


>gi|219682144|ref|YP_002468528.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254765988|sp|B8D7B8|MURC_BUCAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219621877|gb|ACL30033.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 484

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 128/329 (38%), Gaps = 55/329 (16%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  + I+ SSA S   ++  A  + N PIL+     + L  F   +         AV+GT
Sbjct: 76  KNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILMSFKKGI---------AVSGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            GK++  S +  I   SGL    I  G   +I+S+A+                  L S  
Sbjct: 127 HGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAK------------------LGSS- 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            ++   EA         L+   +I    TN+  DHID++             F + +   
Sbjct: 168 -SYFITEADESDASFLYLNPNIIIV---TNIESDHIDHYDNSFKKLKQTFLTFLKKITLY 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISVE 296
             AI+  D+    +++    N  C++++ G+        F++ +     H      I   
Sbjct: 224 GTAIVCIDNNAICDILT---NLKCKIITYGFNKNADVRIFLYKQNNFIGH---FYIILKN 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV------- 349
            K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF+       
Sbjct: 278 NKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQ 337

Query: 350 GTNSRGGRIYV-DYAHTSNSLEMILKNIR 377
           G + R   + + DY H    L   +K IR
Sbjct: 338 GFDKRANCMLIDDYGHHPTELSETIKTIR 366


>gi|149021790|ref|ZP_01835797.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930026|gb|EDK81013.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 444

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGSDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|317010960|gb|ADU84707.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SouthAfrica7]
          Length = 493

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 151/341 (44%), Gaps = 40/341 (11%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           ++++L +   ++       ++A+TG+ GK+S  +F+ QI Q +          +T+   A
Sbjct: 151 SKQYLQIAKDKIASLKNLKVIAITGSFGKTSTKNFLHQILQTTFNVHASPKSVNTLLGIA 210

Query: 158 QD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
            D    L   S IY+A+A +   ++G     ++  +  ++ H    + +IA     +G  
Sbjct: 211 SDINQNLEDSSEIYIAEAGA--RNKG----DIKDITRLIEPH----LAVIA----EVGEQ 256

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H++Y +T +     K     ELL  +       ++A+   V K    A      + Y   
Sbjct: 257 HLEYFKTLENICETK----AELLDSKR-----LENAFCYSVEKIKPYAPNNAPLIDYSSL 307

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              +K + +        + ++G   +F   + G+F  YN  +A  +   +G+++  +   
Sbjct: 308 ---VKNIQSTLKGTSFEMLLDGVWENFETKVLGKFNAYNIALAILIAKHLGLETERIKRL 364

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGD 393
           +  L+ +  R + +  N    ++ +D +   N L+ +L+ IR  ++  GR ++V     +
Sbjct: 365 VLDLNPIAHRLQLLEVNQ---KVIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVE 420

Query: 394 RDQGKRPIMGKIALDLADIAIVTDD-NPRS-----EDPEKI 428
            +     I+ +   ++ D+AI+T + N ++     + P+KI
Sbjct: 421 SNTESNEILAEKINEVFDVAIITGELNSKTIASHLKKPQKI 461


>gi|254495864|ref|ZP_05108774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
 gi|254354900|gb|EET13525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
          Length = 444

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 26/139 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GKS+V + V ++ + +G   + +     I             P+     L  
Sbjct: 107 VIAITGTNGKSTVTTLVGEMAKAAG---YNVAVAGNIGM-----------PV-----LDM 147

Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L  +    + V E SS  LD      +  +  +  N+  DH+D H +  AY  AK R++ 
Sbjct: 148 LEDEHQYDLWVLELSSFQLD--LTSSLAPVVATILNVSPDHLDRHHSMDAYIRAKQRVYH 205

Query: 236 ELLPKESPAIIYADDAYSK 254
                    +   DDAY++
Sbjct: 206 H----AQVVLFNRDDAYTE 220


>gi|313884894|ref|ZP_07818646.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619585|gb|EFR31022.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 443

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 105/282 (37%), Gaps = 56/282 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G+ GK+S    +  +          I PTS                 YL    +  
Sbjct: 107 IAVSGSHGKTSTTGLLSHVVS-------HIQPTS-----------------YLIGDGTGF 142

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   + ++EA  +   +H            TN+  DH D++ +  A F+A M+ F   
Sbjct: 143 GDEAANYFALEACEY---RHHFLAYSPDYAIITNVDFDHPDFYPSIDAVFDA-MQTFANQ 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K    I   +D Y +++  +        + V + G F H  +V A     ++  + EG
Sbjct: 199 THK--GVIACGEDEYLRKLEAK--------VPVHFYG-FSHDNEVYA----DKIERTPEG 243

Query: 298 KDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             FD          F+ P  G+  + NAL    +    G D  LV +H+     V  RF 
Sbjct: 244 SQFDVYINGEFYHHFVLPAFGQHNILNALAVITVLNLEGFDKDLVAQHIASFPGVKRRFS 303

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388
               N+    +  DYAH  + +   +    +     RI+ VF
Sbjct: 304 ARKVNNL--TLIDDYAHHPSEIRATIDAAQQKFPHKRIVAVF 343


>gi|262273812|ref|ZP_06051625.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
 gi|262222227|gb|EEY73539.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
          Length = 487

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 147/377 (38%), Gaps = 61/377 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           GA  +VVS+A         IR + P LV   T +        + A  +  +H    +AV 
Sbjct: 81  GASVVVVSTA---------IRQDNPELVAAKTARIPVVRRAEMLAELMRYRHG---IAVA 128

Query: 122 GTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176
           GT GK++  +    I Q +GL  +F  G    + S   + RL   S   +A+A     S+
Sbjct: 129 GTHGKTTTTALTTLIYQEAGLDPTFVNG--GLVKSAGTNARLGC-SRYLIAEADESDASF 185

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +  +     +  +D +         G+F NL +  ID+                 
Sbjct: 186 LHLQPMVAIVTNIEADHMDTY--------GGNFDNLKQTFIDFLHN-------------- 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            LP    A++  DD   +E++ R    G +V++ G+ +   + LK       K   T+  
Sbjct: 224 -LPFYGLAVMCVDDPVVRELIPR---IGRQVITYGFSEDADVRLKDYRQEGQKGIFTVLR 279

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---T 351
            GK D      +PG     NA  A  +    G++   +L  L        RF+ +G    
Sbjct: 280 AGKPDIHVELNIPGRHNALNAAAAVAVATEDGVEDDAILRALASFEGTGRRFDQLGLFPV 339

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA--LD 408
           +     +  DY H  + +++ ++  R      R+++VF     R    R +    A  L+
Sbjct: 340 DDGYALLVDDYGHHPSEVDVTIQAARAGWADNRLVMVFQP--HRYSRTRDLYDDFANVLE 397

Query: 409 LADIAIVTDDNPRSEDP 425
             D+ ++ D  P  E P
Sbjct: 398 QVDVLLMLDVYPAGEAP 414


>gi|258516477|ref|YP_003192699.1| FolC bifunctional protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780182|gb|ACV64076.1| FolC bifunctional protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 429

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 54/290 (18%)

Query: 202 IKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           I  +    TN+  DH+DY   T Q     K  + +  +P           A + E +K  
Sbjct: 155 ITPVVSVLTNIAMDHMDYLGNTIQEITAVKTGIIKSGIP-------VVTSAKNPEALKII 207

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEF 310
             A CR        K   L  V      +Q   S  G+ F          D   PL G  
Sbjct: 208 -EAACR-------EKAAQLTVVGNQVTVEQKEFSTAGQKFSIFTDSNHYEDLTLPLLGRH 259

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHL------EKLHV------VPGRFEFVGTNSRGGRI 358
           Q+ N   AAG+   I      VL+ L      E +H        P R E +    +   +
Sbjct: 260 QITN---AAGVVAVIE-----VLQQLGYTIPKEAVHSGLAKTDWPARLEIM---RQKPTV 308

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +D AH  + ++ + + +     S ++ +V G  GD+++ K  ++ ++   LA+  ++T 
Sbjct: 309 LIDAAHNLDGVQSLKQALLDYFPSKKVTLVLGMLGDKERSK--VVAELT-PLAEAVVITK 365

Query: 418 DN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            N PR+ D E +  E            N  EA+  A+ M  ++D++ + G
Sbjct: 366 PNSPRAGDWELLADEARRFTDKVTLIENITEAVDAAMSMAGEEDLVCITG 415


>gi|322513881|ref|ZP_08066960.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
 gi|322120280|gb|EFX92227.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
          Length = 436

 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 23/120 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG +GKS+V + V ++ +++G+   ++G    I             P+     LS 
Sbjct: 108 IIAITGANGKSTVTTLVTEMAKQAGI---KVGMGGNIG-----------VPV-----LSL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L+ +    V +E SS  L+      +K +  +  N+  DH+D Y+ + + Y  AK+R+++
Sbjct: 149 LNEEYELFV-LELSSFQLETT--SSLKAVVATILNISEDHMDRYNNSVEEYRLAKLRIYD 205


>gi|319897397|ref|YP_004135594.1| udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Haemophilus
           influenzae F3031]
 gi|317432903|emb|CBY81269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3031]
          Length = 437

 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 40/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGV---KVGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 148 LNEDCELYV-LELSSFQLETTY--SLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN 204

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +L  E       ++  +K  +  A N      S  Y  K  + K+   +  K +V 
Sbjct: 205 AKVGVLNNEDRLTFGENENQAKHTVSFAEN------SADYWLKTENGKQYLMV--KDEVI 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  E         L G     N L A  L  AIGI+   +   L     +  RF+ 
Sbjct: 257 LPCEEA------TLVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQL 306


>gi|299065609|emb|CBJ36781.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CMR15]
          Length = 483

 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 62/319 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA A+VVS+A         +R + P ++    ++   +  + +  +    +  +A+ GT 
Sbjct: 64  GANAVVVSTA---------VRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  +    GL  +F IG    ++S   + RL T   I               
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIV-------------- 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                A +   D   L+   +I    TN+  DH+D +    A        F   LP    
Sbjct: 159 -----AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGI 212

Query: 244 AIIYADDAYSKEVMK----------RAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQ 290
           A++  DD   +E++            A +A  R +   +V  + +F  ++++   H +  
Sbjct: 213 AVLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNG-HAEPP 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++I++          LPG   V NAL A  +   + +    +++ L + + V  RF+  G
Sbjct: 272 LSITLN---------LPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYG 322

Query: 351 ---TNSRGGRIYV--DYAH 364
              T    GR  +  DY H
Sbjct: 323 EVPTADGQGRFTLIDDYGH 341


>gi|257791843|ref|YP_003182449.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eggerthella lenta
           DSM 2243]
 gi|257475740|gb|ACV56060.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eggerthella lenta
           DSM 2243]
          Length = 505

 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMK-RAHNAGCRV 267
           N+  DH+ +H++ +AY +AK++L   L  +P     +   +D    EV + RA +AG R 
Sbjct: 206 NITPDHLHWHRSFEAYRDAKLKLLANLPGVPGAVAVLDATNDVVRAEVRRLRALDAGERG 265

Query: 268 LS-------VGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFL----FPLPGEF 310
            S        G  G    ++  C   N         + +++ G +          + GE 
Sbjct: 266 FSYVPLGTAAGLTGD---MRAACGSDNAAFLDADGTLRVALNGAEHAAARVEELQIKGEH 322

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL  A   +A+G+  + V E L     +  R E  G+ + G R Y D   T  +++
Sbjct: 323 NASNALAVAAAALALGVHESDVAEGLRTFAPLEHRIEPCGSVA-GVRCYNDSKAT--NVD 379

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             LK +      R +V+ G G D+     P++
Sbjct: 380 ATLKALAAFPEARPVVLLG-GDDKGTDLAPLV 410


>gi|94970655|ref|YP_592703.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|166222948|sp|Q1IKH1|MURC_ACIBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94552705|gb|ABF42629.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 137/374 (36%), Gaps = 53/374 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GAE +V SSA   ++          I V+        L   + YG      +A+ G  G
Sbjct: 63  EGAEVVVTSSAIDSRNPEVAEAHANHIPVIQRAEMLAELMRLK-YG------IAIAGMHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +     L+  ++ PT  +                   A+   +  G +H 
Sbjct: 116 KTTTTSMVAAV-----LAGGELDPTVIVGG--------------RVDAMGSNARLGKSHY 156

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL---PKE 241
            V A +   D+  L  +  I    TN+ R+H+D YH  +        R F E +   P  
Sbjct: 157 LV-AEADESDRSFLK-LWFIHAVVTNIDREHMDTYHDMEDVE-----RTFVEFMDRVPFY 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-------QVTIS 294
              +   D+   + ++ R      R+++ G       L +     ++Q       + ++ 
Sbjct: 210 GMVVACNDNEPLRAILPRVRR---RIVTYGTTEGSDFLIRCVPCDSEQLLLGFLNRFSVE 266

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             GK   +FL  +PG   V NA  A  + + + I +  +   L +   V  RF+  G  +
Sbjct: 267 YRGKSLGEFLLRVPGLHNVRNATAAIAIGVGLDIPADKIRAALAEFRGVDRRFQLKG-KA 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--AD 411
               +  DY H    +   L   +      I VVF     R    R +M + A     AD
Sbjct: 326 NDISVIDDYGHHPTEIRATLAAAKQCGFRHIHVVFQP--HRYTRTRDLMDEFASSFGDAD 383

Query: 412 IAIVTDDNPRSEDP 425
              + D  P SE P
Sbjct: 384 SLYLLDIYPASEQP 397


>gi|304413644|ref|ZP_07395088.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
 gi|304283735|gb|EFL92129.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
          Length = 493

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 121/334 (36%), Gaps = 42/334 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  +VVSSA    +          I V+        L   R +G      +AV GT G
Sbjct: 77  QGASVVVVSSAIPENNVEIVAARAARIPVIRRAEMLAELMRYR-HG------IAVAGTHG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  I   +GL      PT                   L KA    +  G +  
Sbjct: 130 KTTTTAMVASIYADAGLD-----PTFVNGG--------------LVKAAGVHARLGCSRY 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A +   D   L    ++A   TN+  DH+D +Q            F   LP    A+
Sbjct: 171 LI-AEADESDASFLHLQPMVA-IVTNIEADHMDTYQGNFENLKQTFINFLHHLPFYGRAV 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           +  DDA  +E++ R    G  + + G+     I +K       +   T+   GK +   +
Sbjct: 229 MCIDDARIREILPR---IGRHITTYGFSDDADIQIKDYQQQQAQGCFTLCRPGKTELKVM 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR 357
              PG     NA  A  +     I    +L  L        RF+F+G       N + G 
Sbjct: 286 LNAPGCHNALNAAAAIAVATEERISDDCILTALANFQGTGRRFDFLGHFSLEKVNGKKGS 345

Query: 358 IYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
           + +  DY H    + + +K  R      RI+++F
Sbjct: 346 VMLVDDYGHHPTEVAVTIKAARAGWPEKRIVMIF 379


>gi|254416325|ref|ZP_05030078.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196176763|gb|EDX71774.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 869

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD- 418
           VDYAH + S E +   +R  +  R+ VV G G  RD+     +G+++ D+ D  I+ +D 
Sbjct: 718 VDYAHNAASYEAVGGFVRNWSGERVGVVGGPGDRRDE-DFINLGRLSADIFDRIIIKEDA 776

Query: 419 ----NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P  E  E IR  I+   P   +    N  +AI TA++ +    ++V+
Sbjct: 777 DLRGRPSGEAAELIRKGILETNPDREYEIILNETDAINTALDGVASGGLVVI 828


>gi|311696484|gb|ADP99357.1| protein containing DUF403, bacteria [marine bacterium HP15]
          Length = 301

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 15/135 (11%)

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP-----GRFEFV----G 350
           ++FL  + G  Q+ N L+A  +    G D   V  +LE+  +       G  +F+    G
Sbjct: 119 YEFLNEIVGRCQMLNGLLAGCMSHDEGYDFIRVGRNLERADMATRQIEVGALQFLDGWDG 178

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T + GG ++       ++ +M   N+R   SG +++ F    +      P    +   L+
Sbjct: 179 TETYGGLLWTSVLRYQSAFQMYRHNVRRKVSGPLVIRFLLQNE------PFPRSVLHSLS 232

Query: 411 DIAIVTDDNPRSEDP 425
           ++A      PR+E P
Sbjct: 233 EVANALGRLPRNEIP 247


>gi|301384719|ref|ZP_07233137.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato Max13]
          Length = 486

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 126/324 (38%), Gaps = 52/324 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV        L   R       + +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGIAVAGTHGK 127

Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           ++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  Q 
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHLQP 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEEL 237
           +  V     +        D +    G F  L +  +++      Y  A M     +  ++
Sbjct: 185 LVAVVTNIDA--------DHMVTYGGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVRDI 236

Query: 238 LP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LP  + P + Y    +S++   RA N    V   G    F  L++     +++ + +SV 
Sbjct: 237 LPLVKRPTMTY---GFSEDSDVRAIN----VRQDGMLTFFTVLRR-----DREPLDVSVN 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRG 355
                    +PG   V N+L    +    G+    +++ L     V  RF+  G     G
Sbjct: 285 ---------MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEG 335

Query: 356 GRIYV--DYAHTSNSLEMILKNIR 377
           G + +  DY H    +  ++  +R
Sbjct: 336 GHVMLVDDYGHHPREVAAVISAVR 359


>gi|220933763|ref|YP_002512662.1| dihydroxy-acid dehydratase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995073|gb|ACL71675.1| dihydroxy-acid dehydratase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 635

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 16/116 (13%)

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-- 382
           I +D  + + H   L+ +P R E +         Y+  AH +++L + + N   IT G  
Sbjct: 77  IAVDDGIAMGHGGMLYSLPSR-EIIADAVE----YMVNAHCADAL-VCISNCDKITPGML 130

Query: 383 ------RIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAE 431
                  I VVF  GG  + GK  I GK + LDL D A+V+  NP+  D + +  E
Sbjct: 131 NAALRLNIPVVFVSGGPMESGKAIIGGKEVHLDLVD-AMVSAANPKESDADVMEME 185


>gi|207721502|ref|YP_002251942.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
 gi|206586662|emb|CAQ17248.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
          Length = 483

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 62/319 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA A+VVS+A         +R + P ++    ++   +  + +  +    +  +A+ GT 
Sbjct: 64  GANAVVVSTA---------VRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  +    GL  +F IG    ++S   + RL T   I               
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIV-------------- 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                A +   D   L+   +I    TN+  DH+D +    A        F   LP    
Sbjct: 159 -----AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGI 212

Query: 244 AIIYADDAYSKEVMK----------RAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQ 290
           A++  DD   +E++            A +A  R +   +V  + +F  ++++   H +  
Sbjct: 213 AVLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNG-HAEPP 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++I++          LPG   V NAL A  +   + +    +++ L + + V  RF+  G
Sbjct: 272 LSITLN---------LPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYG 322

Query: 351 ---TNSRGGRIYV--DYAH 364
              T    GR  +  DY H
Sbjct: 323 EVPTADGQGRFTLIDDYGH 341


>gi|221065139|ref|ZP_03541244.1| UDP-N-acetylmuramate/alanine ligase [Comamonas testosteroni KF-1]
 gi|220710162|gb|EED65530.1| UDP-N-acetylmuramate/alanine ligase [Comamonas testosteroni KF-1]
          Length = 477

 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 22/169 (13%)

Query: 210 TNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           TN+  DH+     D+ + +QA+ +     F   +P    AI+  D    +E++ R     
Sbjct: 179 TNIDADHMETYGHDFGRLKQAFVD-----FLHRMPFYGRAILCVDSPAVREILPRLARP- 232

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLFPLPGEFQVYNALVAA 319
             V + G+ +   +    V A   + + T+  +      D + +  LPGE  V NAL A 
Sbjct: 233 --VTTYGFAEDAQVRAVNVRAEAGRMRFTVRRQNGQSYPDLEVVLSLPGEHNVLNALSAV 290

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYV---DYAH 364
            + + + I    +L  LE    V  RF+  G   +  G ++    DY H
Sbjct: 291 AVAMELEISDEALLRALEGFKGVGRRFQRYGELPAADGNMFTVIDDYGH 339


>gi|317968396|ref|ZP_07969786.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CB0205]
          Length = 460

 Score = 37.4 bits (85), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  PLPG   + NA  A   C   G+  A +   +E L     RF++ G N  G ++  D
Sbjct: 254 FRLPLPGLHNLSNAAAAMAACRLHGVSFAELQRAVEGLQAPGRRFDYRG-NWCGRQVVDD 312

Query: 362 YAHTSNSLEMILKNIRTITSG----------RIIVVF 388
           YAH  + ++  L   R + S           R++VVF
Sbjct: 313 YAHHPSEVQATLAMARLMVSSGRSPLPEAPQRLLVVF 349


>gi|229117960|ref|ZP_04247320.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock1-3]
 gi|228665409|gb|EEL20891.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock1-3]
          Length = 433

 Score = 37.4 bits (85), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 39/209 (18%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDS 329
           K   A+H +     + +G+ FDF+ P          + G  QV NA +A    + +    
Sbjct: 226 KHFTALHKQS----NEDGERFDFVCPFASFEDVRMSMKGVHQVGNASLALMAIMYLKTYV 281

Query: 330 ALVLEHLE---KLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGR 383
           + ++E  E    LH     GRFE + +N     I +D AH    +E ++K +        
Sbjct: 282 SFLIEEEEIRAGLHEAYWIGRFEKLKSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKN 338

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           IIV+F   GD+      ++G++     +I   T    R+   +K+ A          +K 
Sbjct: 339 IIVLFTALGDKQL--HNMVGQLETIADEIIFTTFAFDRAISADKLAAHS--------QKK 388

Query: 444 NRI------EAIRTAIEMLNKQDVLVVAG 466
           ++I      EAI T +EM+   DV ++ G
Sbjct: 389 SKIVFEDWKEAIDTKVEMIGGNDVFIITG 417


>gi|195438214|ref|XP_002067032.1| GK24241 [Drosophila willistoni]
 gi|194163117|gb|EDW78018.1| GK24241 [Drosophila willistoni]
          Length = 341

 Score = 37.4 bits (85), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/76 (19%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++++  V      I+A WI+ AI+   +DG+  IP       + +V+   + ++D++  +
Sbjct: 203 DQQMYAVRGQVSRIKANWIYTAILDESDDGNYIIPN-----CDTVVLGGTHQVKDYNVNV 257

Query: 87  RSNTPILVVDNTRKFL 102
             +    ++   R+F+
Sbjct: 258 SPSDKSFILQGCRRFV 273


>gi|47094075|ref|ZP_00231802.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|47017551|gb|EAL08357.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|328464970|gb|EGF36249.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           1816]
          Length = 447

 Score = 37.4 bits (85), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 128/362 (35%), Gaps = 71/362 (19%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL---- 104
           + G+  D + F  +A+ +    I+  SA ++Q+    I  N      +   + L L    
Sbjct: 28  VQGSDVDKYFFTQKALEEKQIPIMTFSADNIQEGLTIIAGNAFPDTHEEIERALELGLPV 87

Query: 105 -----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                F  +L   +    +A+TG+ GK+S    +  +          I PTS        
Sbjct: 88  IRYHKFLGQLIDGYTS--IAITGSHGKTSTTGLLSHVVG-------AIRPTS-------- 130

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                    YL    +   ++G  + ++EA  +   Q      K      TN+  DH DY
Sbjct: 131 ---------YLIGDGTGSGTKGAEYFALEACEY---QRHFLAYKPTYAIMTNIDWDHPDY 178

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
            ++    FNA    FE L  +   A+    DDA   E+ K   +        G + +F  
Sbjct: 179 FKSVDDVFNA----FETLGKQVKKAVFALGDDA---ELRKLTLDIPIIYFGFGEENEF-- 229

Query: 279 LKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGID 328
                     + V     G  FD          F  P  G+  V NAL    LC   G+ 
Sbjct: 230 --------QAKNVIKETTGTKFDVYHRGEFLGSFEIPTYGDHNVLNALSVIALCDYEGLP 281

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIV 386
              V + L+    V  RF       +  ++ V DYAH  + +   +   R      +++ 
Sbjct: 282 VEDVKKELKTFEGVKRRFSIT---EKANQVLVDDYAHHPSEIRATVNAARQKYPDKKVVA 338

Query: 387 VF 388
           VF
Sbjct: 339 VF 340


>gi|145627891|ref|ZP_01783692.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145639341|ref|ZP_01794947.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|144979666|gb|EDJ89325.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145271644|gb|EDK11555.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|309751215|gb|ADO81199.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2866]
          Length = 475

 Score = 37.4 bits (85), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 132/344 (38%), Gaps = 67/344 (19%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAV 120
           +GA  +VVSSA         I+ + P LV    ++        + A  +  +H    +AV
Sbjct: 76  KGASVVVVSSA---------IKDDNPELVASKQKRIPVIQRAQMLAEIMRFRHG---IAV 123

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176
            GT GK++  + +  I  ++ L    +     +   A  N     S   +A+A     S+
Sbjct: 124 AGTHGKTTTTAMISMIYTQAKLDPTFV--NGGLVKSAGKNAHLGASRYLIAEADESDASF 181

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +  V                        TN+  DH+D ++       A    F  
Sbjct: 182 LHLQPMVSV-----------------------VTNMEPDHMDTYEGDFEKMKATYVKFLH 218

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------ 290
            LP    A++ ADD    E++ +    G +V++ G+  +  +      I + +Q      
Sbjct: 219 NLPFYGLAVMCADDPVLMELVPKV---GRQVITYGFSEQADY-----RIEDYEQTGFQGH 270

Query: 291 -VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--- 346
            + I    +  + L  +PG+    NA  A  +    GI +  +LE L        RF   
Sbjct: 271 YIVICPNNERINVLLNVPGKHNALNATAALAIAKEEGIANEAILEALADFQGAGRRFDQL 330

Query: 347 -EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            EF+  N +  R+  DY H    +++ +K  R      RI+++F
Sbjct: 331 GEFIRPNGK-VRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIF 373


>gi|301169879|emb|CBW29483.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           10810]
          Length = 475

 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 131/350 (37%), Gaps = 79/350 (22%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAV 120
           +GA  +VVSSA         I+ + P LV    ++        + A  +  +H    +AV
Sbjct: 76  EGASVVVVSSA---------IKDDNPELVASKQKRIPVIQRAQMLAEIMRFRHG---IAV 123

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176
            GT GK++  + +  I  ++ L    +     +   A  N     S   +A+A     S+
Sbjct: 124 AGTHGKTTTTAMISMIYTQAKLDPTFV--NGGLVKSAGKNAHLGASRYLIAEADESDASF 181

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +  V                        TN+  DH+D ++       A    F  
Sbjct: 182 LHLQPMVSV-----------------------VTNMEPDHMDTYEGDFEKMKATYVKFLH 218

Query: 237 LLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLS---VGYQGKFIHLKKVC 283
            LP    A++ ADD    E++ +          +  A  R+      G+QG   H   +C
Sbjct: 219 NLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQG---HYTVIC 275

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N +++ +         L  +PG+    NA  A  +    GI +  +LE L       
Sbjct: 276 P--NNERINV---------LLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAG 324

Query: 344 GRF----EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            RF    EF+  N +  R+  DY H    +++ +K  R      RI+++F
Sbjct: 325 RRFDQLGEFIRPNGK-VRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIF 373


>gi|229846167|ref|ZP_04466279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
 gi|229811171|gb|EEP46888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
          Length = 437

 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 42/237 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGV---KVGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 148 LNEDCELYV-LELSSFQLETTY--SLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYH- 203

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   ++  +D+ +        N   +++S    G    LK      N +Q  ++  
Sbjct: 204 ---NAKVGVLNNEDSLT---FGEGENQAEQIVSFAENGADYWLK----TENGKQYLMA-- 251

Query: 297 GKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            KD + + P     L G     N L A  L  A+GI+   +   L +   +  RF+ 
Sbjct: 252 -KD-EVILPCEEATLVGRHNYMNILAATALAQAVGINLDAIRTALRQFKGLDHRFQL 306


>gi|149190169|ref|ZP_01868445.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
 gi|148836058|gb|EDL53019.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
          Length = 486

 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 134/339 (39%), Gaps = 57/339 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A  +VVS+A   ++          I VV        L   R +G      +AV GT G
Sbjct: 80  ENASVVVVSTAIDPENQELVAAKELRIPVVRRAEMLAELMRFR-HG------IAVAGTHG 132

Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180
           K++  + V QI   +G+  +F  G    + S   + RL + S I +A+A     S+L  Q
Sbjct: 133 KTTTTALVTQIYSEAGMDPTFVNG--GLVKSAGTNARLGS-SRILIAEADESDASFLHLQ 189

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEE 236
            +  +     +  +D +         G F  L +  ID+      Y  A M     +  E
Sbjct: 190 PMVSIVTNIEADHMDTY--------GGDFDTLKQTFIDFLHNLPFYGQAVMCVDDPVVRE 241

Query: 237 LLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           L+P  S  +I   ++DDA  +    R           G QGKF  ++K      ++ + I
Sbjct: 242 LIPSVSRQVITYGFSDDADVRIENYRQD---------GQQGKFTVVRK-----GRENLEI 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++          +PG+    NA  A  +     I    ++  +        RFE +G   
Sbjct: 288 TLN---------IPGQHNALNAAAAIAVATEDNIADEAIVNAMLGTEGTGRRFEHLGEFE 338

Query: 354 RG-GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            G G++ +  DY H    +++ +K  R      R++++F
Sbjct: 339 TGNGKVMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 377


>gi|145630236|ref|ZP_01786018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|144984517|gb|EDJ91940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
          Length = 437

 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 40/236 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GKS+V + V ++ + +G+   ++G    I                   ALS 
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGV---KVGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++  
Sbjct: 148 LNEDCELYV-LELSSFQLETTY--SLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN 204

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +L  E       ++  +K  +  A N      S  Y  K  + K+   +  K +V 
Sbjct: 205 AKVGVLNNEDRLTFGENENQAKHTVSFAEN------SADYWLKTENGKQYLMV--KDEVI 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  E         L G     N L A  L  AIGI+   +   L     +  RF+ 
Sbjct: 257 LPCEEA------TLVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQL 306


>gi|218258245|ref|ZP_03474647.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225588|gb|EEC98238.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
          Length = 428

 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +     D+    R+   
Sbjct: 15  KVTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNP----DYFIGERT--- 67

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK-------SSVASFVQQICQRSGLSS 144
            ++VDN    L   A R        I+ +TGT+GK       +SV S    +    G  +
Sbjct: 68  -ILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLN 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG   T+     D+ +                      + + AS  G  +  +D  + 
Sbjct: 127 NHIGVPLTLLRLTHDHEMAV--------------------IEMGASHPGDIKELVDIAQP 166

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             G  TN+GR H++   + +     K  L++ +   +    I  D+ Y KE+
Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIKTKGELYDYMRRTKGKIFINQDNKYLKEI 218


>gi|167614190|gb|ABZ89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 438

 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 41/288 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TGT+GKS+VA+ V+ I ++SG   +  G       F   + L   + +Y+      
Sbjct: 108 IISITGTNGKSTVATIVKNIAKKSGYKVYLGGNI----GFPALDMLEKKADLYI------ 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                     +E SS  L+   +  +K       N+  DH+D Y    Q Y   K+ ++ 
Sbjct: 158 ----------LELSSFQLEN--IFSLKSKLSVVLNINEDHLDRYPDGFQQYKKIKLSIY- 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                ++  I   +    K   K  H       +         +K    ++ KQ+     
Sbjct: 205 -----KNSEICLINLREKKYCFKNKHKKYITFGTNDSDYYVSSIKDKIFLYYKQK----- 254

Query: 296 EGKDFDFLFPLPGEFQVY-NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             K FD       E Q Y NALV+  +  A+      V         +P RF+ V  ++ 
Sbjct: 255 --KIFDMSKTSIHEHQNYENALVSLAISDAMNFPRDKVKYVFSNFKSLPHRFQIVHKHND 312

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
              I    +   NS ++ L NI   T G I ++   GGD+      I+
Sbjct: 313 ISWINDSKSTNINSTKIALSNIN--TKGTIWLLL--GGDKKSANFQIL 356


>gi|281356125|ref|ZP_06242618.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
 gi|281317494|gb|EFB01515.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
          Length = 459

 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 25  WRERKINE----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV--SSAYS 78
           WR+ ++      V +D+R    G +F+A+ G K D H ++ QA+A GA  + +    A  
Sbjct: 19  WRDGRLPAEAVAVYTDTRVAGEGRLFLALPGEKFDAHDYLAQAVAAGAGGLCIRRDRAEK 78

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQI 136
           L +         P+L VD+T       A+    + PE  ++AVTG+ GK+SV   V+ I
Sbjct: 79  LPE-----PCPVPVLEVDDTLAAYQKIANFHRRRFPELKLVAVTGSVGKTSVKEIVRAI 132


>gi|56684727|gb|AAW22050.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori]
          Length = 493

 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 144/335 (42%), Gaps = 66/335 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKAL 174
           ++A+TG+ GK+S   F+ QI Q +  +       +T+   A D    L   S IY+A+A 
Sbjct: 170 VIAITGSFGKTSTKKFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDKSEIYIAEAG 229

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   ++G     ++  +  ++ H    + +IA     +G  H++Y +T +     K  L 
Sbjct: 230 A--RNKG----DIKEITRLIEPH----LAVIA----EVGEQHLEYFKTLENICETKAELL 275

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVT 292
           +                      KR   A C  +     Y  K   L  V ++    Q T
Sbjct: 276 DS---------------------KRLEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQST 314

Query: 293 ISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHV 341
           +  +G  F+ L           + GEF  YN  +A+ + IA  +G+++  +   + +L+ 
Sbjct: 315 L--KGTSFEMLLDSVWERFETKVLGEFSAYN--IASAILIAKHLGLETERIKRLVLELNP 370

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKR 399
           +  R + +  N    +I +D +   N L+ +L+ IR  ++  GR ++V     + +    
Sbjct: 371 IAHRLQLLEVNQ---KIIIDDSFNGN-LKGMLEGIRLASLHKGRKVIVTPGLVESNTESN 426

Query: 400 PIMGKIALDLADIAIVTDD-NPRS-----EDPEKI 428
            ++ +    + D+AI+T + N ++     + P+KI
Sbjct: 427 EVLAQKIDGVFDVAIITGELNSKTIASKLKTPQKI 461


>gi|170768600|ref|ZP_02903053.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
 gi|170122704|gb|EDS91635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
          Length = 491

 Score = 37.4 bits (85), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDNAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|116512986|ref|YP_811893.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|123320128|sp|Q02W92|MURC_LACLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116108640|gb|ABJ73780.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 443

 Score = 37.4 bits (85), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH DY +  +   +A    F++        I     AY ++V  R  +A   +  
Sbjct: 171 TNIDFDHPDYFEGIEDVTSA----FQDYANNIKKGIF----AYGEDVNLRKLSAKAPIYY 222

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAA 319
            G++            +  + +  +  G  FD          F+ P  G+  V NAL   
Sbjct: 223 YGFEAN--------DDYRAENLIRNTRGSSFDAYFRGEKIGHFVVPAYGKHNVLNALSVV 274

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIR 377
            +C  +G+D   V +HL     V  RF    T  + G   +  D+AH    +E  L   R
Sbjct: 275 AVCHNLGLDMTDVADHLLTFRGVKRRF----TEKKVGETVIIDDFAHHPTEIEATLDAAR 330

Query: 378 TITSGR-IIVVF 388
                R I+ VF
Sbjct: 331 QKYPDREIVAVF 342


>gi|317478547|ref|ZP_07937705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
 gi|316905300|gb|EFV27096.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
          Length = 432

 Score = 37.4 bits (85), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 104/231 (45%), Gaps = 22/231 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G +F+A+ G   +G+ F  +A+  G A AIV   AY+          +T 
Sbjct: 16  VTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPA-------GDTR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            +VV+N+ K L   A+    +    I+ +TGT+GK++    +  +  ++    + +G   
Sbjct: 69  YIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L       +  V + AS  G  +  ++  +   G  TN
Sbjct: 128 -------NNHIGVPLTL-----LRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261
           +G+ H++   + +     K  +++ L   KE+   I+ D+ Y K++    H
Sbjct: 176 VGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLH 226


>gi|218899625|ref|YP_002448036.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus G9842]
 gi|218545377|gb|ACK97771.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus G9842]
          Length = 433

 Score = 37.4 bits (85), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 27/203 (13%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDS 329
           K   A+H + +     +G++FDF  P          + G  QV NA +A    + +    
Sbjct: 226 KHFTALHKQSKE----DGEEFDFTCPFAAFEDLQISMKGIHQVGNAALALMAVMYVKTYL 281

Query: 330 ALVLEHLE-----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGR 383
           + ++E  E     +     GRFE + +N     I +D AH    +E ++K +        
Sbjct: 282 SFLIEEEEIRTGLREAYWIGRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKN 338

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +IV+F   GD+      ++G++     +I   T    R+   +K+ +          E  
Sbjct: 339 VIVLFTALGDKQL--HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE-- 394

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           N  EAI T +EM+ + DV ++ G
Sbjct: 395 NWKEAIDTKVEMIGENDVFIITG 417


>gi|315633815|ref|ZP_07889104.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
 gi|315477065|gb|EFU67808.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
          Length = 434

 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 22/119 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +GLS   +G    I                   ALS 
Sbjct: 106 IVAITGSNGKSTVTTLVAEMAKAAGLS---VGMGGNIG----------------IPALSL 146

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L+     ++ +E SS  L+      +K +A +  N+  DH++ +   Q Y +AK+++++
Sbjct: 147 LNQSHDIYI-LELSSFQLETTY--SLKTVAATVLNVTEDHMNRYVDLQDYRHAKLKIYD 202


>gi|83748767|ref|ZP_00945782.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|207744400|ref|YP_002260792.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724588|gb|EAP71751.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|206595805|emb|CAQ62732.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
          Length = 483

 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 62/319 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA A+VVS+A         +R + P ++    ++   +  + +  +    +  +A+ GT 
Sbjct: 64  GANAVVVSTA---------VRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  +    GL  +F IG    ++S   + RL T   I               
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIV-------------- 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                A +   D   L+   +I    TN+  DH+D +    A        F   LP    
Sbjct: 159 -----AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGI 212

Query: 244 AIIYADDAYSKEVMK----------RAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQ 290
           A++  DD   +E++            A +A  R +   +V  + +F  ++++   H +  
Sbjct: 213 AVLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNG-HAEPP 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++I++          LPG   V NAL A  +   + +    +++ L + + V  RF+  G
Sbjct: 272 LSITLN---------LPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYG 322

Query: 351 ---TNSRGGRIYV--DYAH 364
              T    GR  +  DY H
Sbjct: 323 EVPTADGQGRFTLIDDYGH 341


>gi|304407502|ref|ZP_07389154.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343453|gb|EFM09295.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
          Length = 444

 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 33/197 (16%)

Query: 210 TNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           TN+  DH+     D+++ ++AY    ++   ++ P +  AI+  DD   +E++       
Sbjct: 162 TNIEPDHLENYEGDFNKLKEAY----VQFLHQVKP-DGKAIVCIDDTNLQEMLPSLRGGA 216

Query: 265 CR---VLSVG------YQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            R   +++ G      Y+   + L  +KV  I ++   T+       +    +PG   VY
Sbjct: 217 LRNDQIVTYGIDQEANYRASDLQLGDRKVSFILHRDGETLG------NVELSVPGRHNVY 270

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEM 371
           NA+     C+  G+    V E +        RF  +G  +    I V  DYAH    ++ 
Sbjct: 271 NAMATIITCLEAGLSFESVAEAIRLFRGAKRRFHVLGEKN---DILVIDDYAHHPTEIQA 327

Query: 372 ILKNIRTITSGRIIVVF 388
            +   +  T  RI+ VF
Sbjct: 328 TISAAKA-TGKRIVAVF 343


>gi|260911068|ref|ZP_05917704.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634872|gb|EEX52926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 433

 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   AG IF A+ G   +G+ F   A+ QG   +VV  A         ++ +   
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCAFVVVDEA------EYCVQGDERY 69

Query: 93  LVVDNTRKFLSLFA 106
           ++VDN  +   L A
Sbjct: 70  ILVDNVLRAFQLLA 83


>gi|154494091|ref|ZP_02033411.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
 gi|154086351|gb|EDN85396.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
          Length = 428

 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +     D+    R+   
Sbjct: 15  KVTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNP----DYFIGERT--- 67

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK-------SSVASFVQQICQRSGLSS 144
            ++VDN    L   A R        I+ +TGT+GK       +SV S    +    G  +
Sbjct: 68  -ILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLN 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG   T+     D+ +                      + + AS  G  +  +D  + 
Sbjct: 127 NHIGVPLTLLRLTHDHEMAV--------------------IEMGASHPGDIKELVDIAQP 166

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             G  TN+GR H++   + +     K  L++ +   +    I  D+ Y KE+
Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIKTKGELYDYMRRTKGKIFINQDNKYLKEI 218


>gi|109946909|ref|YP_664137.1| folylpolyglutamate synthase / dihydrofolate synthase [Helicobacter
           acinonychis str. Sheeba]
 gi|109714130|emb|CAJ99138.1| folylpolyglutamate synthase / dihydrofolate synthase [Helicobacter
           acinonychis str. Sheeba]
          Length = 386

 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 11/79 (13%)

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           VL+HL+ L ++ GR E +  N     I +D  H  +S + + + I+ + + +II+++ C 
Sbjct: 254 VLQHLKPLDLI-GRCELLSPN-----ILIDVGHNPHSAKALKEEIKRVFNTKIILIYNCY 307

Query: 392 GDRD-----QGKRPIMGKI 405
            D+D     +  +P++ K+
Sbjct: 308 QDKDAFGVLEILKPVIKKV 326


>gi|46907836|ref|YP_014225.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226224206|ref|YP_002758313.1| UDP-N-acetyl muramate-alanine ligase [Listeria monocytogenes
           Clip81459]
 gi|254824335|ref|ZP_05229336.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|254852227|ref|ZP_05241575.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|254931544|ref|ZP_05264903.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|254994071|ref|ZP_05276261.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           J2-064]
 gi|300766118|ref|ZP_07076085.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|59798317|sp|Q71Z62|MURC_LISMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509776|sp|C1KVQ2|MURC_LISMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46881105|gb|AAT04402.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876668|emb|CAS05377.1| Putative UDP-N-acetyl muramate-alanine ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605535|gb|EEW18143.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|293583099|gb|EFF95131.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|293593569|gb|EFG01330.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|300513199|gb|EFK40279.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|332312046|gb|EGJ25141.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes str.
           Scott A]
          Length = 447

 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 128/362 (35%), Gaps = 71/362 (19%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL---- 104
           + G+  D + F  +A+ +    I+  SA ++Q+    I  N      +   + L L    
Sbjct: 28  VQGSDVDKYFFTQKALEEKQIPIMTFSADNIQEGLTIIAGNAFPDTHEEIERALELGLPV 87

Query: 105 -----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                F  +L   +    +A+TG+ GK+S    +  +          I PTS        
Sbjct: 88  IRYHKFLGQLIDGYTS--IAITGSHGKTSTTGLLSHVVG-------AIRPTS-------- 130

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                    YL    +   ++G  + ++EA  +   Q      K      TN+  DH DY
Sbjct: 131 ---------YLIGDGTGSGTKGAEYFALEACEY---QRHFLAYKPTYAIMTNIDWDHPDY 178

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
            ++    FNA    FE L  +   A+    DDA   E+ K   +        G + +F  
Sbjct: 179 FKSVDDVFNA----FETLGKQVKKAVFALGDDA---ELRKLTLDIPIIYFGFGEENEF-- 229

Query: 279 LKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGID 328
                     + V     G  FD          F  P  G+  V NAL    LC   G+ 
Sbjct: 230 --------QAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSVIALCDYEGLP 281

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIV 386
              V + L+    V  RF       +  ++ V DYAH  + +   +   R      +++ 
Sbjct: 282 VEDVKKELKTFEGVKRRFSIT---EKANQVLVDDYAHHPSEIRATVNAARQKYPDKKVVA 338

Query: 387 VF 388
           VF
Sbjct: 339 VF 340


>gi|110640304|ref|YP_668032.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 536]
 gi|191174588|ref|ZP_03036082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300984513|ref|ZP_07177005.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|123148432|sp|Q0TLP8|MURC_ECOL5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110341896|gb|ABG68133.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli 536]
 gi|190905135|gb|EDV64780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300306682|gb|EFJ61202.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|324012254|gb|EGB81473.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 60-1]
          Length = 491

 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---------- 259
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 260 AHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 SEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMHVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|218532974|ref|YP_002423790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium chloromethanicum CM4]
 gi|218525277|gb|ACK85862.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           chloromethanicum CM4]
          Length = 455

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 27/143 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  +    + + +G    Q+G                     +  A+  L
Sbjct: 117 VAITGTNGKSTTTALTAHLLRHAG-RDVQMGGN-------------------IGTAILSL 156

Query: 178 SSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                T V V E SS  +D      +K   G   NL  DH+D H T + Y   K    E 
Sbjct: 157 EPPAATRVHVVELSSFQIDL--TPSLKPGVGILLNLTPDHLDRHGTMENYAAIK----ER 210

Query: 237 LLPKESPAIIYADDAYSKEVMKR 259
           L+     A+I  DD Y   + +R
Sbjct: 211 LVAGADLAVIGVDDPYCAAIAER 233


>gi|156741086|ref|YP_001431215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|189082915|sp|A7NI97|MURD_ROSCS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156232414|gb|ABU57197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 472

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 173 ALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           AL  L S    T V +E SS  L+     G+       T +  DH+D H T +AY  AK 
Sbjct: 149 ALDQLPSISATTPVVLELSSFVLEGLGEAGLSPKIACITTIAPDHLDRHGTMEAYIQAKE 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
            ++    P + P ++ AD    + +       G  V   G +G  ++  K
Sbjct: 209 EIWRHQRPGD-PVVLCADSPIMRAMAVVDRRPGDMVWFAGAKGSDVYRLK 257


>gi|326795769|ref|YP_004313589.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
 gi|326546533|gb|ADZ91753.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
          Length = 476

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 114/289 (39%), Gaps = 53/289 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  S +  I   +G   +F IG    ++S   + +L + S   +A+A   
Sbjct: 120 IAVAGTHGKTTTTSLMSSILTATGDAPTFVIG--GKLTSAGTNAQLGS-SKYLVAEADES 176

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q  T +                        TN+  DH+D   T Q  F    R
Sbjct: 177 DASFLHLQPQTVI-----------------------VTNIDEDHMD---TYQGDFEQVKR 210

Query: 233 LFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHN 287
            F E    LP    A++  DD   + +M         VL+ G   Q  F       +   
Sbjct: 211 TFIEFIHNLPFYGLAVLCIDDENVRSIMPELSRP---VLTYGIEEQADFYATDIKQSGRY 267

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            + +    EG+      P+PG+  V NAL    +   +G+   ++   L     V  RF+
Sbjct: 268 CEFMAHLPEGEPIRIRLPMPGKHNVLNALATIAVATDLGVAPNVIQAGLMGFEGVGRRFQ 327

Query: 348 FVG--TNSRGGR-IYV-DYAHTSNSLEMILKNIRTITSG----RIIVVF 388
            +     S GG+ ++V DY H  +    +L  I  I  G    R+++V+
Sbjct: 328 ELEPLVLSDGGKAMFVDDYGHHPSE---VLATINAIRDGWPEKRLVMVY 373


>gi|322386970|ref|ZP_08060594.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus cristatus
           ATCC 51100]
 gi|321269252|gb|EFX52188.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus cristatus
           ATCC 51100]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +D   +++ +   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGED---EQLRRITSNAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +    +     +S  G++  +F  P  G   + NA    GL    GI
Sbjct: 224 GFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGRHNIMNATAVIGLLYIAGI 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFSGVKRRF 302


>gi|238916668|ref|YP_002930185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           eligens ATCC 27750]
 gi|259509787|sp|C4Z534|MURD_EUBE2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|238872028|gb|ACR71738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           eligens ATCC 27750]
          Length = 450

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 111/292 (38%), Gaps = 39/292 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           Y      I+A+TGT+GK++  + V QI       +F +G    I +      L T    Y
Sbjct: 103 YNYDKGKIIAITGTNGKTTTTALVGQIIAAYNEKTFVVG---NIGNSYTGEVLKTSEDSY 159

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               +S    + V              H       I  +  N+  DH++ H T + Y   
Sbjct: 160 TVAEISSFQLETV--------------HEF---HPIVSAILNITPDHLNRHHTMECYAWT 202

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K R+ E    K    ++  +D Y  +         C+   V +  +      V A  + +
Sbjct: 203 KERISEN-QTKADTCVLNLEDKYLTDFAPE-----CKANVVWFSSE--RKPSVGAYVDGE 254

Query: 290 QVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +  +    D+D L      L G+    N   A  +  A GI   +++E ++K   V  R
Sbjct: 255 MIKYTDGTNDYDMLNVHDMNLLGKHNYENVCAAIAMTKAAGIPDDIIIEQVKKFKAVEHR 314

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            E+V T  + G  Y + +  +N  E  +K I  +    I++    GG  D+G
Sbjct: 315 IEYVAT--KNGVDYYNDSKGTNP-EAAVKAIEAMVKPTILI----GGGYDKG 359


>gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
 gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
          Length = 820

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 128/338 (37%), Gaps = 46/338 (13%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-------------YSL 79
           +DSR +      +F A+   +  G  +IP+   +G    V++                S 
Sbjct: 3   TDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSG 62

Query: 80  QDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           QD  A    N+ +     L+V N  K L   A     K    ++ +TG++GK+ V  ++ 
Sbjct: 63  QDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLH 122

Query: 135 QICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           Q+          + P   I  S  + ++++  P  ++    LS  +  G+    +     
Sbjct: 123 QL----------LSPDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGISEMGE 169

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD- 250
                R+  IK   G  TN+G  H      Q+ +F+ + +  E+L L K+   +IY  D 
Sbjct: 170 MGALKRM--IKPTIGILTNIGGAH------QENFFSLQEKCMEKLTLFKDCDVVIYNGDN 221

Query: 251 -AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              S  V K    A     S     + +++ +V    +   ++      D  F  P   +
Sbjct: 222 ELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCIPFIDD 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             + N L     C+ +   +  + E + +L  +  R E
Sbjct: 282 ASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLE 319


>gi|269798175|ref|YP_003312075.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
 gi|269094804|gb|ACZ24795.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
          Length = 456

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 194 LDQHRLDGIK---LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L  ++L+ IK    I     N+  DH+  H+T + Y  AK R+FE  L  +   ++  DD
Sbjct: 164 LSSYQLETIKHFRPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTDY-LVLNIDD 222

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                V    H A   +L +  +     G +    K C I         +  +D      
Sbjct: 223 PV---VADMEHRAPSHILKISQKKAVENGAYYADGK-CYIAKDGVAKFVIADEDIH---- 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +PG   + N L    L  A+G+    +   + + H V  R E V T
Sbjct: 275 IPGSHNIENILTVIALSYALGVPVETIHRIISEFHGVEHRLERVKT 320


>gi|254382594|ref|ZP_04997952.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           Mg1]
 gi|194341497|gb|EDX22463.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           Mg1]
          Length = 481

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E      + A
Sbjct: 174 LAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE----GNTVA 227

Query: 245 IIY--ADDAYSKEVMKRAHNAGCRVL 268
            +Y  AD A    V +     GCR +
Sbjct: 228 CVYNVADRATEDLVGEADVEEGCRAI 253


>gi|284045211|ref|YP_003395551.1| UDP-N-acetylmuramate/alanine ligase [Conexibacter woesei DSM 14684]
 gi|283949432|gb|ADB52176.1| UDP-N-acetylmuramate/alanine ligase [Conexibacter woesei DSM 14684]
          Length = 477

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           RFE +GT + G  +Y DYAH    +   +   RT+  GR++VVF
Sbjct: 330 RFELLGTTASGATVYDDYAHHPTEVAATVAAARTLAPGRVVVVF 373


>gi|326797502|ref|YP_004315321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
 gi|326548266|gb|ADZ76651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
          Length = 457

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 116/281 (41%), Gaps = 43/281 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + +TG++GKS+       I Q++G++   +G    I  SF                AL  
Sbjct: 116 VCITGSNGKSTTTMLTYHILQKAGIN---VGLAGNIGKSF----------------ALQV 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
            + Q   +V +E SS  LD   +   +       N+  DH+D Y    + Y N+K R+  
Sbjct: 157 ATEQYEVYV-LEISSFMLDD--MYDFRADIAVLLNITPDHLDRYDYKMENYVNSKFRITR 213

Query: 236 ELLPKESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKK--VCAIHNK 288
               +E+   IY  D    +K +  +  NA     S+  +   G +++ +K  V  + N+
Sbjct: 214 N--QRENDIFIYCKDDPETNKALTAKEINATMYPFSLTEEVQYGAYLNEEKEIVITLPNQ 271

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           ++  +S+          L G+  VYN + +  +     + +  + E +     +P R E 
Sbjct: 272 ERFIMSIND------LALQGKHNVYNNMASGIVAKVWELRNESIRESMGDFVNIPHRLEH 325

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           V   S    I    A   NS+   L+++     G+I+++ G
Sbjct: 326 VTKISGIEFINDSKATNVNSVWYALESL----PGKIVLIMG 362


>gi|325202773|gb|ADY98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240149]
          Length = 436

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M    + ++ + +DSR I+AG +F A+ G + D H F+   +A        +   S +D 
Sbjct: 1   MPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAA----GAAAVVVSREDC 56

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            A   +    L VD+T   L   A          +  +TG+ GK++V   +  + +R
Sbjct: 57  VAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRR 109


>gi|255020009|ref|ZP_05292082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970538|gb|EET28027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 448

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 147/373 (39%), Gaps = 48/373 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+ V +D+R   +G +FVA+ G + DGH F+  A   GA A++V             
Sbjct: 24  EKEIHGVGTDTRTHLSGRLFVALRGPRFDGHDFVEAARKAGAAAVLVQRP---------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS--- 143
            S  P ++V +    L + A+    +   ++ AVTG+ GK++V   +  + ++SG     
Sbjct: 74  -SPGPGVLVADPLAALQVLAAAWRRELGTSLAAVTGSCGKTTVKEILAAMLRQSGPCLAT 132

Query: 144 ----SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
               +  IG   T++    ++R               +   G+ H    A    L +   
Sbjct: 133 RGNLNNHIGVPLTLAELGPEHR-------------HAVVEMGMNHAGEIAV---LTRMAR 176

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             + LI     N G  HI+   +  A   AK  + E  L     A+I  DD Y+    +R
Sbjct: 177 PDLALI----NNAGPAHIENLGSIAAIAAAKGEILEG-LSAHGIAVINGDDEYADYWAER 231

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVA 318
           A      V       +   ++       K  V  +     +     PL G     N L A
Sbjct: 232 APG---EVWRFSLDDRPARVRGQWRPQGKGGVLDLRAPQGNVSLRIPLSGRHNGANVLAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
               +A+ +    +   +E L   PGR ++     +GG   +D  + +N  S+E  L+ +
Sbjct: 289 TTAALALNLGLDQIARAVEALTPAPGRLQW--REGKGGSRILDDTYNANPASVEAALR-V 345

Query: 377 RTITSGRIIVVFG 389
                GR  +V G
Sbjct: 346 LAEQPGRRYLVLG 358


>gi|17547562|ref|NP_520964.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           GMI1000]
 gi|25008811|sp|Q8XVI8|MURC_RALSO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17429866|emb|CAD16550.1| probable udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 483

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 62/319 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA A+VVS+A         +R + P ++    ++   +  + +  +    +  +A+ GT 
Sbjct: 64  GANAVVVSTA---------VRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  +    GL  +F IG    ++S   + RL T   I               
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIV-------------- 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                A +   D   L+   +I    TN+  DH+D +    A        F   LP    
Sbjct: 159 -----AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGI 212

Query: 244 AIIYADDAYSKEVMK----------RAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQ 290
           A++  DD   +E++            A +A  R +   +V  + +F  ++++   H +  
Sbjct: 213 AVLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNG-HAEPP 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++I++          LPG   V NAL A  +   + +    +++ L + + V  RF+  G
Sbjct: 272 LSITLN---------LPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYG 322

Query: 351 ---TNSRGGRIYV--DYAH 364
              T    GR  +  DY H
Sbjct: 323 EVPTADGQGRFTLIDDYGH 341


>gi|16800714|ref|NP_470982.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria innocua Clip11262]
 gi|24212046|sp|Q92BA4|MURC_LISIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16414133|emb|CAC96877.1| murC [Listeria innocua Clip11262]
 gi|313623565|gb|EFR93744.1| UDP-N-acetylmuramate--alanine ligase [Listeria innocua FSL J1-023]
          Length = 447

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 100/283 (35%), Gaps = 58/283 (20%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +          I PTS                 YL    +  
Sbjct: 104 IAITGSHGKTSTTGLLSHVVG-------AIRPTS-----------------YLIGDGTGS 139

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++   + ++EA  +   Q      K      TN+  DH DY ++    FNA    FE L
Sbjct: 140 GTKDAKYFALEACEY---QRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+    D    E+ K + +        G + +F            + V     G
Sbjct: 193 GKQVKKAVFALGD--DVELRKLSLDVPIIYFGFGSENEF----------QAKNVKKETTG 240

Query: 298 KDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             FD          F  P  G+  V NAL    LC   G+    V + L+    V  RF 
Sbjct: 241 TKFDVYHRDEFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDEVKKELKTFEGVKRRFS 300

Query: 348 FVGTNSRGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVF 388
                 +G ++ V DYAH  + +   +   R    + +I+ VF
Sbjct: 301 IT---EKGNQVLVDDYAHHPSEIRATVNAARQKYPNKKIVAVF 340


>gi|89099607|ref|ZP_01172482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
 gi|89085760|gb|EAR64886.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
          Length = 450

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL   H+DYH T+  YF AK  + +    +E   II AD    + V++ A  +  R++
Sbjct: 186 LTNLYDAHLDYHGTRHDYFEAKANITKNQT-EEDYFIINAD---QEAVIQLAEESRARIV 241

Query: 269 S-----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                 V   G  +    +C   N + V    +         LPG   + N L +     
Sbjct: 242 PFSVSRVLEAGACVKDGWIC--FNGEPVMKREDAS-------LPGNHNLENILSSIAAAK 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G+D+  + + +     V  R +++G    G + Y D   T+     IL     I +  
Sbjct: 293 LSGVDNKAIFKVMSSFAGVKHRLQYIG-EVDGRKFYNDSKATN-----ILATKNAIAAFD 346

Query: 384 IIVVFGCGG-DRDQGKRPIMGKIA 406
           + V+   GG DR  G   ++  +A
Sbjct: 347 VPVILLAGGLDRGNGFEELIPSLA 370


>gi|118594248|ref|ZP_01551595.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophilales bacterium HTCC2181]
 gi|118440026|gb|EAV46653.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophilales bacterium HTCC2181]
          Length = 453

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 33/285 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQ--DNRLTTPSPI 168
           H + +LAV GT GK++  + +  I + +GL+   +  G     SS A+  DN        
Sbjct: 101 HDKWVLAVAGTHGKTTTTAMLAWILESNGLAPGYLIGGVPGNFSSSARIPDNTSKNAPSF 160

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           ++ +A  Y ++        +  S  +  H    I        NL  DH D     + +  
Sbjct: 161 FVIEADEYDTA------FFDKRSKFVHYHPRTLI------LNNLEFDHADIFDDLE-HIK 207

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCA 284
             +      +P+    I  A+    +E +K    +     S      YQ +         
Sbjct: 208 KHVHHLVRTIPEHGRIICNAESRALEETIKMGLWSEIEYFSHDKEWSYQWQ--------- 258

Query: 285 IHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +KQ + I  + K    L + L G     NAL A      +G+  A  ++ L     V 
Sbjct: 259 -EDKQSIDIFYQAKKQGSLTWNLIGHHNASNALAAIAAARHVGVSPAQSIQALSSFKGVK 317

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVV 387
            R E +     G +IY D+AH  ++++  LK + +T  SGRI+VV
Sbjct: 318 KRMEKIAQLKNGVQIYDDFAHHPSAIQTTLKGLNQTKKSGRIVVV 362


>gi|329940944|ref|ZP_08290224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseoaurantiacus M045]
 gi|329300238|gb|EGG44136.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseoaurantiacus M045]
          Length = 489

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    +++ + +  NL  DH+D+H + +AY   K R++E        A
Sbjct: 182 LAVELSSYQL--HWAPSLRVHSAAVLNLAPDHLDWHGSMEAYAADKGRVYE----GNRIA 235

Query: 245 IIY--ADDAYSKEVMKRAHNAGCRVLSVGY 272
            +Y  AD A    V +     GCR  +VG+
Sbjct: 236 CVYNMADKATEDLVREADVEEGCR--AVGF 263


>gi|255603590|ref|XP_002538076.1| UDP-n-acetylmuramate--l-alanine ligase, putative [Ricinus communis]
 gi|223513909|gb|EEF24307.1| UDP-n-acetylmuramate--l-alanine ligase, putative [Ricinus communis]
          Length = 101

 Score = 37.0 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   V NA  A  +   +G+D+  +   L     V  RF   G  + G R+  DY H
Sbjct: 24  PMAGHHNVLNATAAVAVARELGLDADAIRAGLAAFGGVKRRFTTTGV-ANGIRVVDDYGH 82

Query: 365 TSNSLEMILKNIRTITSGR 383
               +  +LK  R ++ G+
Sbjct: 83  HPVEIAAVLKAARAVSQGK 101


>gi|77361418|ref|YP_340993.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876329|emb|CAI87551.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 453

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 97/264 (36%), Gaps = 53/264 (20%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  I  ++GL  +F IG    + + A  N     S   +A+A   
Sbjct: 91  IAIAGTHGKTTTTSLIASIYAQAGLDPTFIIG---GLLNSAGSNAKVGKSDFLIAEADES 147

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  V                        TN+  DH++ +            
Sbjct: 148 DASFLHLQPMVSV-----------------------ITNIEEDHMETYGGSLEKMKDTYV 184

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-------YQGKFIHLKKVC-- 283
            F   LP    A++  D   + E++ R    G  V++ G           F      C  
Sbjct: 185 DFIHNLPFYGLAVVCIDSEVASELIPRF---GRPVITYGESSDADYRMSDFSQSANTCKF 241

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            + NKQ       G+       +PG+    NA  A  +     I +  +LE L+K   + 
Sbjct: 242 TVTNKQ-------GESLTATLNMPGKHNALNATAAIAVAKDQNIANFAILEALQKFEGIG 294

Query: 344 GRFEFVG--TNSRGGRIYV-DYAH 364
            RF+  G   N RG  + V DY H
Sbjct: 295 RRFQHYGEFENERGSVMLVDDYGH 318


>gi|332663135|ref|YP_004445923.1| UDP-N-acetylmuramate--L-alanine ligase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331949|gb|AEE49050.1| UDP-N-acetylmuramate--L-alanine ligase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 456

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG   + NA VA  + + +G     + + LE    V  RFE +  +      + DYA
Sbjct: 270 MPLPGRHNIENATVAMSIALQLGASDEALRDGLEAFRGVKRRFEIIHRDEEVA-FFDDYA 328

Query: 364 HTSNSLEMILKNIRTI-TSGRIIVVF 388
           H    L   +   R +  + RI  VF
Sbjct: 329 HHPTELNAAIGAARELFPAARITGVF 354


>gi|300690342|ref|YP_003751337.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
 gi|299077402|emb|CBJ50027.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
          Length = 483

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 62/319 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA A+VVS+A         +R + P ++    ++   +  + +  +    +  +A+ GT 
Sbjct: 64  GANAVVVSTA---------VRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  +    GL  +F IG    ++S   + RL T   I               
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIV-------------- 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                A +   D   L+   +I    TN+  DH+D +    A        F   LP    
Sbjct: 159 -----AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGI 212

Query: 244 AIIYADDAYSKEVMK----------RAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQ 290
           A++  DD   +E++            A +A  R +   +V  + +F  ++++   H +  
Sbjct: 213 AVLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNG-HAEPP 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++I++          LPG   V NAL A  +   + +    +++ L + + V  RF+  G
Sbjct: 272 LSITLN---------LPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYG 322

Query: 351 ---TNSRGGRIYV--DYAH 364
              T    GR  +  DY H
Sbjct: 323 EVPTADGQGRFTLIDDYGH 341


>gi|325690935|gb|EGD32935.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK115]
          Length = 444

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + IY +D   +++ +   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFIYGED---EQLRRITSNAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +    +     +S  G++  +F  P  G   + NA    GL    G+
Sbjct: 224 GFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGRHNIMNATAVIGLLYTAGL 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFGGVKRRF 302


>gi|325838528|ref|ZP_08166550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490823|gb|EGC93125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 459

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSV 270
           G DH++  +T Q Y NAK  +   ++P+    I+ ADD    E +K    + C+  ++  
Sbjct: 189 GIDHLERCKTLQGYINAKAEMV-SVIPEGGTLILNADD----EKIKTIDTSKCKGNIIYF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCIAIGI 327
           G           +   +N    T+++    +    P  G+ QVYNAL  +AA   + IGI
Sbjct: 244 GIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQVYNALAALAATHEMGIGI 303

Query: 328 DSA--------LVLEHLE 337
             A        L++ H E
Sbjct: 304 TQAAQALSSFKLLMNHCE 321


>gi|303235741|ref|ZP_07322348.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella disiens
           FB035-09AN]
 gi|302484188|gb|EFL47176.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella disiens
           FB035-09AN]
          Length = 459

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 104/276 (37%), Gaps = 38/276 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL--SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           L   GT GK+S ++    I  +S L  ++F  G +    +                   +
Sbjct: 115 LCFAGTHGKTSTSTMCAHIMHQSHLDCNAFLGGISKNYGT-------------------N 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y+ S    +V +EA       H L   +      T+   DH+D + T++AY  +  R + 
Sbjct: 156 YILSDSSDYVVIEADEFDRSFHWL---RPYMSVITSTDPDHLDIYGTKEAYLES-FRHYT 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           EL+ K    +I+ D       MK     G +V     +    H + +  I N   V   V
Sbjct: 212 ELIQKGGTLVIHTDLE-----MKPNVQEGVKVYEYSREKGDFHAENI-RIKNGTIVFDMV 265

Query: 296 EG----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  D +   P+P    + N + A  L    G  S  + + ++    V  RF+F   
Sbjct: 266 SPIENINDIELGQPIP--INIENGIAAMALAQLSGCTSDELRKGMKSYAGVDRRFDFKIM 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           N +   +  DYAH    +    K+++ I   R I V
Sbjct: 324 NDQ-HVLLSDYAHHPKEILQSAKSLKEIYPDRKITV 358


>gi|187735187|ref|YP_001877299.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
 gi|187425239|gb|ACD04518.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
          Length = 460

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 11/181 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+  DH D + + +       R   +++P+   A++ ADD    +V+K    A C V +
Sbjct: 186 NNIEFDHADIYNSLEE-IKLSFRRLTQIIPRNGLALVNADDPNCLDVVK---GAPCPVKT 241

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           VG+     I +  V    +    T+  EG    +  P+ GEF + NA +A       G++
Sbjct: 242 VGFSDSSNIRILDVETSTDGSHFTL--EGT--RYYVPMIGEFNIRNAAMAIAAAQFAGLN 297

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
              + + + +   V  R E  G    G  +  D+AH   +++  +  +R      RI  +
Sbjct: 298 VKQLADSMSRFEGVARRQEVKGV-VNGISVVDDFAHHPTAIKQAILGLRQRYPESRIWAI 356

Query: 388 F 388
           F
Sbjct: 357 F 357


>gi|160887823|ref|ZP_02068826.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
 gi|156862653|gb|EDO56084.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
          Length = 432

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 104/231 (45%), Gaps = 22/231 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G +F+A+ G   +G+ F  +A+  G A AIV   AY+          +T 
Sbjct: 16  VTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPA-------GDTR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            +VV+N+ K L   A+    +    I+ +TGT+GK++    +  +  ++    + +G   
Sbjct: 69  YIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P  +     L       +  V + AS  G  +  ++  +   G  TN
Sbjct: 128 -------NNHIGVPLTL-----LRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261
           +G+ H++   + +     K  +++ L   KE+   I+ D+ Y K++    H
Sbjct: 176 VGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLH 226


>gi|148651992|ref|YP_001279085.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychrobacter
           sp. PRwf-1]
 gi|148571076|gb|ABQ93135.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychrobacter sp.
           PRwf-1]
          Length = 485

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 37/194 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   SL   +        I +V + + F      +   K P  I+A+TG++ KS
Sbjct: 85  ASRIIISPGVSLATPAVAAAKQAGIAIVSDIQLF------KEACKAP--IVAITGSNAKS 136

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS- 186
           +V + V Q+ + +G++   +G    I                   ALS L  + +     
Sbjct: 137 TVTTLVGQMAKDAGVN---VGVGGNIG----------------VPALSLLEDEALGEAMQ 177

Query: 187 ---VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS  L+     G K+   +  N+  DH+D H     Y  AK R+F+        
Sbjct: 178 LAVLELSSFQLETVTNLGAKV--ATVLNMSPDHLDRHGDMLGYHQAKHRIFQ----GAQS 231

Query: 244 AIIYADDAYSKEVM 257
            ++  DDA S+ ++
Sbjct: 232 VVVNRDDALSRPLI 245


>gi|125718599|ref|YP_001035732.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK36]
 gi|166224742|sp|A3CPS7|MURC_STRSV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125498516|gb|ABN45182.1| UDP-N-acetylmuramate--L-alanine ligase, putative [Streptococcus
           sanguinis SK36]
          Length = 444

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + IY +D   +++ +   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFIYGED---EQLRRITSNAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +    +     +S  G++  +F  P  G   + NA    GL    G+
Sbjct: 224 GFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGRHNIMNATAVIGLLYTAGL 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFGGVKRRF 302


>gi|288916244|ref|ZP_06410624.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f]
 gi|288352435|gb|EFC86632.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f]
          Length = 840

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 25/128 (19%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-----------SRLYGKH 113
           AQG +A+V+S A  ++D  A +R+ T   V+    +F +  A            RL+G  
Sbjct: 703 AQGTDALVLSGAGLVRDVVADLRAGTTPAVI--AARFHTTLARLTVDTCVALRERLFGTE 760

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLS------------SFQIGPTSTISSFAQDNR 161
           P  +    G  G   +A  ++    RSG +               +G  +  S+ +Q+N+
Sbjct: 761 PGTVALSGGVFGNVRLAGEIEDGLARSGFTVLTHARVPCNDGGISLGQAAVASARSQENQ 820

Query: 162 LTTPSPIY 169
             +P+P +
Sbjct: 821 SDSPAPSF 828


>gi|237739354|ref|ZP_04569835.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
 gi|229422962|gb|EEO38009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
          Length = 432

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 97/247 (39%), Gaps = 47/247 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TGT+GKS+  + +  +   +G  +   G                     L++AL  
Sbjct: 93  IIAITGTNGKSTTTAKISDLLNHAGYKACYAGNIGR----------------SLSEAL-- 134

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  + +  VS+E SS  L+   ++  +       N+G DHI+ +++   Y++ K      
Sbjct: 135 LHEKDLDFVSLELSSFQLEN--VENFRPYISMIINMGPDHIERYKSFDEYYDTKFN---- 188

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +   ++    + ++    E+ KRA     + +SV    +      V    NK  V     
Sbjct: 189 IAKNQNENQYFIENIDDVEIEKRAKQIKAKRISVSKSKE----ANVYVEDNKIYV----- 239

Query: 297 GKDF----DFLFPLPGEFQVYNALVAAGLCIAIGIDS---------ALVLEHLEKLHVVP 343
           GKDF    D L  L G   + N L        + ID          A  LEH  +L    
Sbjct: 240 GKDFIIEADKL-SLKGIHNLENTLFMVATAEILNIDREKLKEFLMVATPLEHRTELFFNY 298

Query: 344 GRFEFVG 350
           G+ +F+ 
Sbjct: 299 GKVKFIN 305


>gi|254462013|ref|ZP_05075429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206678602|gb|EDZ43089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 485

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S D+R I+ G +FVA+   + DGH F+ QA+A+GA A +V+           +  +
Sbjct: 23  VSGISIDTRSIEVGDLFVALKAAR-DGHEFVAQALAKGAGAALVTH------VPEGVAKD 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            P+LVV++    L         +    ++A+TG+ GK+S    ++ +    G
Sbjct: 76  APLLVVEDVLSALEDLGRAGRARTEARVVAITGSVGKTSTKEMLRDVLSAQG 127


>gi|157369004|ref|YP_001476993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Serratia
           proteamaculans 568]
 gi|157320768|gb|ABV39865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia
           proteamaculans 568]
          Length = 439

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 31/166 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++GKS+V + V ++ + +G   + +G    I                   ALS 
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WAVGVGGNIG----------------LPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L  +   +V +E SS  L+      +   A +  N+  DH+D Y    Q Y  AK+R++E
Sbjct: 148 LRQECQLYV-LELSSFQLETTF--SLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYE 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    ++ ADDA +  V      A  R +S G      HL +
Sbjct: 205 ----NAEVCVVNADDALTMPV----RGADKRCISFGADVGDYHLNR 242


>gi|332670123|ref|YP_004453131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
 gi|332339161|gb|AEE45744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
          Length = 485

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 21/224 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G +FVA+ G   DGH + P A+A GA  ++ +   +  D         P 
Sbjct: 34  VVTDSREVEPGGLFVALPGEHVDGHDYAPGAVAAGAALVLGARELTGADGRLLPVVVVPD 93

Query: 93  L---VVDNTRKFL-SLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +   + D  R+ L  L A+ L    P   ++ +TG+ GK++    + Q+C  +       
Sbjct: 94  VERALGDLAREVLVRLRAASLEPGGPGLRVVGITGSVGKTTTKDLLAQLCGSA------- 146

Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           GPT + + SF  +N +  P  +  A       S     + + AS  G   +  D      
Sbjct: 147 GPTVAPVRSF--NNEIGLPLTVLRAD-----ESTRFLVLEMGASGPGHLTYLTDIAPPDV 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                +G  H+      +A   AK  + + LLP +  A++ ADD
Sbjct: 200 AVVLVVGHAHLGGFGGIEAVATAKSEIVQGLLP-DGVAVLNADD 242


>gi|330938046|gb|EGH41814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 332

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 26/133 (19%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA   Y K P  ++A+TG++ KS+V + V ++   +G               A    
Sbjct: 100 IELFAR--YAKAP--VIAITGSNAKSTVTTLVGEMAAAAG------------KRVAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L TP+         YL S  V    +E SS  L+    D +     +  N+  DH+D + 
Sbjct: 144 LGTPA--------LYLLSDEVELYVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYS 193

Query: 222 TQQAYFNAKMRLF 234
              AY  AK R+F
Sbjct: 194 GLPAYHLAKHRIF 206


>gi|271502041|ref|YP_003335067.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
 gi|270345596|gb|ACZ78361.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
          Length = 486

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 150/417 (35%), Gaps = 83/417 (19%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG----- 67
           EL    SI P   R R I+ V      +      +A  G +  G    P A+ Q      
Sbjct: 5   ELAKLRSIVPEMHRVRHIHFVGIGGAGMGGIAEVLANEGYEISGSDLAPNAVTQQLTDLG 64

Query: 68  --------------AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
                         A  +VVSSA +  +          I V+        L   R +G  
Sbjct: 65  ARIYFHHRPENVNEASVVVVSSAIAADNPEIIAAHEARIPVIRRAEMLAELMRFR-HG-- 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ GT GK++  + V  I   +GL  +F  G    + +     RL + S   +A+
Sbjct: 122 ----IAIAGTHGKTTTTAMVTSIYAEAGLDPTFVNG--GLVKAAGTHARLGS-SRYLIAE 174

Query: 173 A----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           A     S+L  Q +  +     +  +D ++        G F NL +  I++      Y +
Sbjct: 175 ADESDASFLHLQPMVAIVTNIEADHMDTYQ--------GDFENLKQTFINFLHNLPFYGH 226

Query: 229 AKMRL----FEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           A M L      ELLPK    I    +++DA  +    R          VG QG F     
Sbjct: 227 AVMCLDDAVIRELLPKVGRHITTYGFSEDADVRVADYR---------QVGAQGLF----- 272

Query: 282 VCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                     T++ +GK   +     PG     NA  A  +    GID   +L  L +  
Sbjct: 273 ----------TLARQGKPLLNVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALVRFQ 322

Query: 341 VVPGRFEFVG------TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               RF+F+G       N + G   +  DY H    ++  +K  R      R++++F
Sbjct: 323 GTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIF 379


>gi|227114782|ref|ZP_03828438.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 422

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 24/142 (16%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400
           +PGRF+ V  + R   + +D AH  ++   + K +  +  +G++  V G   D+D     
Sbjct: 286 LPGRFQTVQASPR---LILDVAHNPHAAAYLAKRLAELPKTGKVRAVVGMLSDKD----- 337

Query: 401 IMGKIALDLADIAIVTD-------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
               IA  LA +  + D       + PR    ++I AE +     F    + + A + A+
Sbjct: 338 ----IAGTLAHLTPLVDAWYCAPLEGPRGATAQQI-AEHLTRSQSF---SDVVAAWKQAM 389

Query: 454 EMLNKQDVLVVAGKGHETVHIV 475
               +QD+++V G  H   H++
Sbjct: 390 SEATEQDIVIVCGSFHTVAHVM 411


>gi|160901141|ref|YP_001566723.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
 gi|160366725|gb|ABX38338.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
          Length = 875

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 13/137 (9%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQV N + A      +G+    +   L          PGRF  +  + RG  +  DY H 
Sbjct: 690 FQVENVMAAIAAAWGVGMPWQTIRRGLAGFVNDSDNAPGRFNVM--DYRGATLIADYGHN 747

Query: 366 SNSLEMILKNIRTITSG-RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPR 421
            +++  +++ +  + +  R +V+ G G  RDQ    +  I+GK A D  D+ +  D   R
Sbjct: 748 PDAIRALVQAVDAMPAQRRSVVISGAGDRRDQDITEQTQILGK-AFD--DVILYQDACQR 804

Query: 422 SEDPEKIRAEIIHGIPG 438
                ++ A +  G+ G
Sbjct: 805 GRADGEVLALLQQGLQG 821


>gi|49475857|ref|YP_033898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           henselae str. Houston-1]
 gi|62900525|sp|Q6G2Q3|MURD_BARHE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49238665|emb|CAF27911.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Bartonella
           henselae str. Houston-1]
          Length = 466

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 106/265 (40%), Gaps = 38/265 (14%)

Query: 110 YGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           YG   E++  +A+TGT+GKS+  + +  + ++ G      G   T         + T  P
Sbjct: 114 YGFCDEDVPFIAITGTNGKSTTTALLAHLLEQMGYDVQMGGNIGT--------AILTLKP 165

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
               K   Y+         +E SS  +D      ++   G   NL  DHID H +   Y 
Sbjct: 166 --FVKKRIYV---------IECSSFQID--LAPSLQPTIGLLLNLTPDHIDRHGSFAHYV 212

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           NAK    + L+   S A I  DDA  + + ++  + G  V +V  +    H  +     +
Sbjct: 213 NAK----KNLVTGASQAFISVDDAACQVLYRQLLHEGHHVEAVSKE----HFVENGFYAD 264

Query: 288 KQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             Q+    +G+     D   +  L G     NAL+A     A+ I    + +HL     +
Sbjct: 265 GTQLFSVCQGRRHMLADLASMAALRGSHNAQNALMALATLQALKITDPHMNKHLASYQGL 324

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSN 367
             R + V     G  ++++ +  +N
Sbjct: 325 AHRMQQV--RKMGSVLFINDSKATN 347


>gi|325275007|ref|ZP_08141002.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas sp. TJI-51]
 gi|324099856|gb|EGB97707.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas sp. TJI-51]
          Length = 312

 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 108/279 (38%), Gaps = 50/279 (17%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  A+ +VVSSA +  +          I VV        L   R +G      +AV GT 
Sbjct: 73  AATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-HG------VAVAGTH 125

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
           GK++  S +  +    GL  +F IG    +++   + +L T S   +A+A     S+L  
Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235
           Q +  V     +        D +    G F  L +  +++      Y  A M L      
Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234

Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+LP+ + P + Y    +S+E   RA N    V   G Q  F  L++ C           
Sbjct: 235 EILPQVKRPTVTY---GFSEEADIRAIN----VRQQGMQTHFTVLRRDC----------- 276

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALV 332
              +  D    +PG   V NAL    +    GI D A+V
Sbjct: 277 ---EPLDVSVNMPGNHNVLNALATIAIATDEGITDEAIV 312


>gi|229093553|ref|ZP_04224655.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-42]
 gi|228689883|gb|EEL43688.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-42]
          Length = 433

 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S  G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K +++      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVKSHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+    ++ +          E  N  EAI T +EM+
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRAISAGELASYAKKESKLVFE--NWKEAIDTKVEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 GENDVFIITG 417


>gi|297616870|ref|YP_003702029.1| FolC bifunctional protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144707|gb|ADI01464.1| FolC bifunctional protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 419

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 20/176 (11%)

Query: 301 DFLFPLPGEFQVYN---ALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRG 355
           +    L G++Q+ N   A++     +A G D  +  V + L +L   PGR E +  +   
Sbjct: 239 EVFLSLAGDYQLENLKTAMMVLSRLVARGWDLPVSAVKQALGEL-TWPGRMEKLSDDPM- 296

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VD AH S+  + + + + ++  G  RI+V   CG   D+    I+G + +    + 
Sbjct: 297 --VVVDAAHNSDGAKALARALDSVLPGKSRILV---CGVLDDKDGEAILGSL-VSRTRMC 350

Query: 414 IVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +VT   P S+  +K R +        P  +E  +  +A+ TA+  L +++ ++V G
Sbjct: 351 VVT--RPESDRAQKWREKTAIAYRLFPRVVEAEDIEQALSTAVNELQREEYILVTG 404


>gi|296532819|ref|ZP_06895494.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
 gi|296266856|gb|EFH12806.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
          Length = 478

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 15/195 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  +A   TN+  +H+D+  T++A      + F   +P    A++ AD    + ++    
Sbjct: 174 LPAVAAVVTNMDAEHLDHWGTEEAMKQGYAQ-FVGNIPFYGFAVLCADHPNVQAMIPHLD 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGEFQV 312
               R+++ G+  +   ++    I ++   T  V  +D              P+ G+  V
Sbjct: 233 R---RLITYGFSPQ-ADVRAERLITDRMGATFEVTVQDRLTGRSRSLKPMRLPMLGQHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  + I + ID   +   L     V  RF  VG    G +I  DY H    +  +
Sbjct: 289 QNALAAIAVGIEMDIDEGTIRSALLGFKGVKRRFTRVG-EVNGVQIIDDYGHHPVEIAAV 347

Query: 373 LKNIRTITSGRIIVV 387
           LK  R   +  +I V
Sbjct: 348 LKAARQAGARDVIAV 362


>gi|294632042|ref|ZP_06710602.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
 gi|292835375|gb|EFF93724.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
          Length = 463

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 35/225 (15%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKR------------AHNAG 264
           H    A  +     FE    K  P    +I AD   ++E+ +R            + +A 
Sbjct: 190 HHANYASMDEIYESFETFAGKIVPGGTLVISADHDGARELTRRLAGSVRTVTYGESADAD 249

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            RVLSV  QG             K +VT+ ++G +  F   +PG    +NA+ A    +A
Sbjct: 250 VRVLSVVPQGL------------KSEVTVLLDGAELTFAVSVPGRHYAHNAVAALAAGVA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           +GI +A +   L     V  R +  G  + G ++   YAH    +   L+ +R      R
Sbjct: 298 LGIPAAELAPALAAYAGVKRRLQLKG-EAAGVQVIDSYAHHPTEMSADLEAMRAAAGDAR 356

Query: 384 IIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           I+VVF        ++ GK   MG+ AL LAD + V D  P  EDP
Sbjct: 357 ILVVFQPHLFSRTQELGKE--MGQ-ALTLADASAVLDIYPAREDP 398


>gi|226360232|ref|YP_002778010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodococcus
           opacus B4]
 gi|226238717|dbj|BAH49065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodococcus opacus
           B4]
          Length = 499

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 22/127 (17%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSP 167
           LYG      L VTGT+GK++  S +Q I + +GL S   G    I     D  R T P  
Sbjct: 116 LYGPPR-RWLVVTGTNGKTTTTSMLQSILEAAGLPSLACG---NIGLPVLDALRPTGPRA 171

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             LA               VE SS  L  H    ++  AG+  N+  DH+D+H   Q Y 
Sbjct: 172 EVLA---------------VELSSFQL--HWAPSVRPTAGAILNIAEDHLDWHGGMQPYI 214

Query: 228 NAKMRLF 234
           +AK R  
Sbjct: 215 DAKARAL 221


>gi|71891930|ref|YP_277660.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|109892692|sp|Q493Q0|MURC_BLOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71796036|gb|AAZ40787.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 480

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 14/190 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DHI  +Q    Y       F   LP    AI+  DD    E++ +      ++++
Sbjct: 193 TNIDTDHIHEYQGNFEYLKKAFIDFLHNLPFYGYAIVCIDDPVICEILPKIKR---KIIT 249

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G+ +   +H+        K   T+S             PG     NA  A  +    GI
Sbjct: 250 YGFNKNANLHIFNYRQHIEKSSFTVSRFNQTKLQVTLNAPGCHNALNATAAIAVATEEGI 309

Query: 328 DSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
              ++L+ +        RFE +G       N + G I +  DY H    L   +  IRT 
Sbjct: 310 SDKIILKTMLDFQGTHRRFENLGYYSLNKINDQTGEILLIDDYGHHPAELHATIVAIRTG 369

Query: 379 ITSGRIIVVF 388
               R+++VF
Sbjct: 370 WPDRRLVMVF 379


>gi|303250495|ref|ZP_07336692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307251537|ref|ZP_07533444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307256037|ref|ZP_07537825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|302650483|gb|EFL80642.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861001|gb|EFM93007.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306865459|gb|EFM97354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 436

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 23/120 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG +GKS+V + V ++ +++G+   ++G    I             P+     LS 
Sbjct: 108 IIAITGANGKSTVTTLVTEMAKQAGI---KVGMGGNIG-----------VPV-----LSL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L+ +    V +E SS  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++
Sbjct: 149 LNDEYELFV-LELSSFQLETT--SSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYD 205


>gi|300702963|ref|YP_003744565.1| UDP-N-acetylmuramate--l-alanine ligase [Ralstonia solanacearum
           CFBP2957]
 gi|299070626|emb|CBJ41921.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CFBP2957]
          Length = 483

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 62/319 (19%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124
           GA A+VVS+A         +R + P ++    ++   +  + +  +    +  +A+ GT 
Sbjct: 64  GANAVVVSTA---------VRGDNPEVLAARAKRIPIVPRAVMLAELMRLKQGIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  +    GL  +F IG    ++S   + RL T   I               
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIV-------------- 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                A +   D   L+   +I    TN+  DH+D +    A        F   LP    
Sbjct: 159 -----AEADESDASFLNLFPVIE-VITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGI 212

Query: 244 AIIYADDAYSKEVMK----------RAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQ 290
           A++  DD   +E++            A +A  R +   +V  + +F  ++++   H +  
Sbjct: 213 AVLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNG-HAEPP 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++I++          LPG   V NAL A  +   + +    +++ L + + V  RF+  G
Sbjct: 272 LSITLN---------LPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYG 322

Query: 351 ---TNSRGGRIYV--DYAH 364
              T    GR  +  DY H
Sbjct: 323 EVPTADGQGRFTLIDDYGH 341


>gi|25028611|ref|NP_738665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium efficiens YS-314]
 gi|259507669|ref|ZP_05750569.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Corynebacterium
           efficiens YS-314]
 gi|30316047|sp|Q8FNT8|MURD_COREF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23493897|dbj|BAC18865.1| putative UDP-N-acetylmuramoyl-L-alanyl-D- glutamate synthetase
           [Corynebacterium efficiens YS-314]
 gi|259164716|gb|EEW49270.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Corynebacterium
           efficiens YS-314]
          Length = 475

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           AG   NL  DHID+H + + Y  AK R+    +     A+I ADD+Y  E+      +G 
Sbjct: 194 AGLVLNLAEDHIDWHGSFRDYALAKTRVLTAPV-----AVIGADDSYLVELTTELGLSGL 248

Query: 266 RVLSVGYQG 274
              ++G  G
Sbjct: 249 IGFTLGEPG 257


>gi|293365802|ref|ZP_06612508.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus oralis ATCC
           35037]
 gi|307703329|ref|ZP_07640273.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus oralis ATCC
           35037]
 gi|291315735|gb|EFE56182.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus oralis ATCC
           35037]
 gi|307623105|gb|EFO02098.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus oralis ATCC
           35037]
          Length = 444

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +D    E+ K   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDP---ELRKITANAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|253828104|ref|ZP_04870989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511510|gb|EES90169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 478

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 133/319 (41%), Gaps = 62/319 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQD--NRLTTPSPIYL 170
           I+AVTG+ GK+S+ +F+ Q+ Q      F++  T    +T++    D    L++ + IY+
Sbjct: 157 IIAVTGSYGKTSLKNFLVQVLQ----DEFKVYATPRSVNTLTGIIADINQNLSSLTDIYI 212

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A               A   G  +  ++ IK        +G  HI+Y ++    + AK
Sbjct: 213 VEA--------------GARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAK 258

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIH--- 286
             +       +SP             +++ +N         + G  I   + V ++    
Sbjct: 259 YEIL------QSPN------------LQKVYNYKDNTPPQNFYGNMIWFPQNVSSVDTSL 300

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N    +++  G+  DF   + G F V N   A  +    GI S  +++ + ++  V  R 
Sbjct: 301 NGTSFSLTYNGEKMDFETKILGAFNVANISAAIQVAKDFGISSERIIKQVCRMEGVSHRL 360

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGK 404
             +  N    ++ +D ++  N L+ +L+ IR  ++  GR ++V    G  +  K      
Sbjct: 361 SKIMVND---KVILDDSYNGN-LDGMLEAIRLSSLYDGRKVIV--TPGLVESSKE---AN 411

Query: 405 IALDLA-----DIAIVTDD 418
           IAL  A     DIAI+T +
Sbjct: 412 IALAEAIDRVFDIAIITGE 430


>gi|326318672|ref|YP_004236344.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375508|gb|ADX47777.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 861

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQV NA+ +      IG+    +   L          PGRF  +  + RG  +  DY H 
Sbjct: 674 FQVENAMASIAAAWGIGLPWDTIRRGLAGFVNDSDNAPGRFNVM--DFRGATVIADYGHN 731

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRD----QGKRPIMG 403
            +++  ++  +  +   R  VV    GDR     +G+  I+G
Sbjct: 732 PDAMRALVSAVDALPGNRRSVVISGAGDRRDEDIRGQTEILG 773


>gi|325203523|gb|ADY98976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240355]
          Length = 436

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M    + ++ + +DSR  +AG +F A+ G + D H F+   +A        +   S +D 
Sbjct: 1   MPSESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDVLAA----GAAAVVVSREDC 56

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            A        L VD+T   L + A          +  +TG+ GK++V   +  + +R
Sbjct: 57  VAM----DGALKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRR 109


>gi|191167770|ref|ZP_03029577.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209917284|ref|YP_002291368.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SE11]
 gi|307311458|ref|ZP_07591100.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|309796081|ref|ZP_07690493.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|226706322|sp|B6HZ68|MURC_ECOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190902196|gb|EDV61938.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209910543|dbj|BAG75617.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE11]
 gi|306908437|gb|EFN38935.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|308120323|gb|EFO57585.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|315059314|gb|ADT73641.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli W]
 gi|320200390|gb|EFW74976.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EC4100B]
 gi|323181788|gb|EFZ67201.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1357]
 gi|323380128|gb|ADX52396.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli KO11]
 gi|324017748|gb|EGB86967.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 117-3]
          Length = 491

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 35/189 (18%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--------- 260
           TN+  DH+D +Q            F   LP    A++  DD   +E++ R          
Sbjct: 193 TNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGF 252

Query: 261 -HNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             +A  RV     +G QG F  L++     +K+ + +++           PG     NA 
Sbjct: 253 NEDADVRVEDYQQIGPQGHFTLLRQ-----DKEPMRVTLNA---------PGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRIYV--DYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIR 377
           ++  +K  R
Sbjct: 359 VDATIKAAR 367


>gi|68249688|ref|YP_248800.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260581812|ref|ZP_05849608.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|81335883|sp|Q4QLF7|MURC_HAEI8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68057887|gb|AAX88140.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260095005|gb|EEW78897.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|309973394|gb|ADO96595.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2846]
          Length = 475

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 131/350 (37%), Gaps = 79/350 (22%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAV 120
           +GA  +VVSSA         I+ + P LV    ++        + A  +  +H    +AV
Sbjct: 76  KGASVVVVSSA---------IKDDNPELVASKQKRIPVIQRAQMLAEIMRFRHG---IAV 123

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176
            GT GK++  + +  I  ++ L    +     +   A  N     S   +A+A     S+
Sbjct: 124 AGTHGKTTTTAMISMIYTQAKLDPTFV--NGGLVKSAGKNAHLGASRYLIAEADESDASF 181

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q +  V                        TN+  DH+D ++       A    F  
Sbjct: 182 LHLQPMVSV-----------------------VTNMEPDHMDTYEGDFEKMKATYVKFLH 218

Query: 237 LLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLS---VGYQGKFIHLKKVC 283
            LP    A++ ADD    E++ +          +  A  R+      G+QG   H   +C
Sbjct: 219 NLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQG---HYTVIC 275

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N +++ +         L  +PG+    NA  A  +    GI +  +LE L       
Sbjct: 276 P--NNERINV---------LLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAG 324

Query: 344 GRF----EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            RF    EF+  N +  R+  DY H    +++ +K  R      RI+++F
Sbjct: 325 RRFDQLGEFIRPNGK-VRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIF 373


>gi|306834707|ref|ZP_07467777.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49726]
 gi|304569411|gb|EFM44906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49726]
          Length = 153

 Score = 37.0 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 32  EVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           EVS+   DS  +  G +F A+ G +  G  F+    A GA   V++ A  L D       
Sbjct: 23  EVSACGLDSASLPEGALFAALPGTRVHGAQFVGDTKA-GA---VLTDAPGL-DHLRQANE 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             PI+VVD+ R  L   A+ +YG HP   L V G
Sbjct: 78  TRPIIVVDDIRAVLGPIAAEIYG-HPTRDLTVLG 110


>gi|255325491|ref|ZP_05366593.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Corynebacterium tuberculostearicum SK141]
 gi|255297429|gb|EET76744.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Corynebacterium tuberculostearicum SK141]
          Length = 511

 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 137/363 (37%), Gaps = 61/363 (16%)

Query: 113 HPE---NILAVTGTSGKSSVASFV-------------------QQICQRSGLSSFQIGPT 150
           HPE   +++ + GT+GKSS A  V                   Q++ +R G+    I P 
Sbjct: 93  HPERSFDVIHIAGTNGKSSTARMVDSLLRAFHRRVGLVTSPHLQRVTERIGIDGQPIHPR 152

Query: 151 S------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS--SHGLDQHRLDGI 202
           +       I  F +     +  P+   + L  LS        V+ +    GL   R D  
Sbjct: 153 NYVRIWHEIKPFVEMVDAQSDVPMSKFEVLVGLSYAAFADAPVDVAVVEVGL-GGRWDAT 211

Query: 203 KLIAGS---FTNLGRDHIDY--------HQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            ++       T +G DH DY           +      +    + L P E+  +I   D 
Sbjct: 212 NVVNADVSVITPVGLDHTDYLGDTLAEIAGEKAGIIKPREDADDPLTPNENIVVIAEQDP 271

Query: 252 YSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
            +  V +++A +    V   G +  F  L+   A+   QQV I   G  + D   PL GE
Sbjct: 272 EAMRVILQQAVDVEAGVARSGSE--FAALESRIAV-GGQQVNIQGLGGLYEDIFLPLHGE 328

Query: 310 FQVYNALVAA-------GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            Q  NA VA        G      +D A V     +  + PGR E V T+      ++D 
Sbjct: 329 HQAKNAAVALAAVEAFFGASAGHPLDVATVRNGFAQA-ISPGRLERVRTSP---TTFIDA 384

Query: 363 AHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH  +  + +   + R     R+I V     D+D     I+  +   L ++ I  + +PR
Sbjct: 385 AHNPHGAKALGAALDRDFDFARLIGVLSIFADKDATG--ILTALEPYLTEVVITPNSSPR 442

Query: 422 SED 424
           + D
Sbjct: 443 ALD 445


>gi|238019064|ref|ZP_04599490.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
 gi|237864319|gb|EEP65609.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
          Length = 456

 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 194 LDQHRLDGIK---LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           L  ++L+ IK    I     N+  DH+  H+T + Y  AK R+FE  L  +   ++  DD
Sbjct: 164 LSSYQLETIKHFRPIGAIMLNITADHLARHKTMENYIAAKERIFENQLSTDF-MVLNIDD 222

Query: 251 AYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
               ++  R  +H        V   G + + K  C +  K  +   V G D      +PG
Sbjct: 223 PIVADMEHRVLSHILKISQHQVVPNGAY-YDKGQCYV-TKDGIATPVIGSDD---IHIPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              + N L    L   +G+ +  +   + + H V  R E V T
Sbjct: 278 SHNIENILTVIALTYVLGVPAETIHRIISEFHGVEHRLERVKT 320


>gi|109892723|sp|Q3IFY1|MURC_PSEHT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 98/262 (37%), Gaps = 49/262 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +A+ GT GK++  S +  I  ++GL  +F IG    + + A  N     S   +A+A   
Sbjct: 121 IAIAGTHGKTTTTSLIASIYAQAGLDPTFIIG---GLLNSAGSNAKVGKSDFLIAEADES 177

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231
             S+L  Q +  V              D ++   GS   +   ++D+      Y  A + 
Sbjct: 178 DASFLHLQPMVSVITNIEE--------DHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVC 229

Query: 232 ---RLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--AI 285
               +  EL+P+   P I Y + + +   M                  F      C   +
Sbjct: 230 IDSEVASELIPRFGRPVITYGESSDADYRMS----------------DFSQSANTCKFTV 273

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            NKQ       G+       +PG+    NA  A  +     I +  +LE L+K   +  R
Sbjct: 274 TNKQ-------GESLTATLNMPGKHNALNATAAIAVAKDQNIANFAILEALQKFEGIGRR 326

Query: 346 FEFVG--TNSRGGRIYV-DYAH 364
           F+  G   N RG  + V DY H
Sbjct: 327 FQHYGEFENERGSVMLVDDYGH 348


>gi|328946830|gb|EGG40967.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1087]
          Length = 444

 Score = 37.0 bits (84), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + IY +D   +++ +   NA     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFIYGED---EQLRRITSNAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +    +     +S  G++  +F  P  G   + NA    GL    G+
Sbjct: 224 GFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGRHNIMNATAVIGLLYTAGL 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFGGVKRRF 302


>gi|207092460|ref|ZP_03240247.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 467

 Score = 37.0 bits (84), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 62/320 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKAL 174
           ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D    L   S IY+A+A 
Sbjct: 144 VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDNKSEIYIAEAG 203

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   ++G     ++  +  ++ H    + +IA     +G  H++Y +T +     K  L 
Sbjct: 204 A--RNKG----DIKEITRLIEPH----LAVIA----EVGEQHLEYFKTLENICETKAELL 249

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVT 292
           +                      KR   A C  +     Y  K   L  V ++    Q T
Sbjct: 250 DS---------------------KRLEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQST 288

Query: 293 ISVEGKDFD---------FLFPLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHV 341
           +  +G  F+         F   + GEF  YN  +A+ + IA  +G+++  +   + +L+ 
Sbjct: 289 L--KGTSFEIFIDSVWERFETKILGEFSAYN--IASAILIAKHLGLETERIKRLVLELNP 344

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGR-IIVVFGCGGDRDQGK 398
           +  R + +  N    +I +D +   N L+ +L+ IR  ++  GR +IV  G      +  
Sbjct: 345 IAHRLQLLEVNQ---KIIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESN 400

Query: 399 RPIMGKIALDLADIAIVTDD 418
             +  KI   + D+AI+T +
Sbjct: 401 ETLAQKID-GVFDVAIITGE 419


>gi|307127726|ref|YP_003879757.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           670-6B]
 gi|306484788|gb|ADM91657.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           670-6B]
          Length = 444

 Score = 37.0 bits (84), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDIFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEVEGNDFVASDLLRSITGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|293376913|ref|ZP_06623130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292644459|gb|EFF62552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 459

 Score = 37.0 bits (84), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSV 270
           G DH++  +T Q Y NAK  +   ++P+    I+ ADD    E +K    + C+  ++  
Sbjct: 189 GIDHLERCKTLQGYINAKAEMV-SVIPEGGTLILNADD----EKIKTIDTSKCKGNIIYF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCIAIGI 327
           G           +   +N    T+++    +    P  G+ QVYNAL  +AA   + IGI
Sbjct: 244 GIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQVYNALADLAATHEMGIGI 303

Query: 328 DSA--------LVLEHLE 337
             A        L++ H E
Sbjct: 304 TQAAQALSSFKLLMNHCE 321


>gi|224419171|ref|ZP_03657177.1| D-alanyl-D-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313142677|ref|ZP_07804870.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313131708|gb|EFR49325.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
          Length = 485

 Score = 37.0 bits (84), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 133/319 (41%), Gaps = 62/319 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQD--NRLTTPSPIYL 170
           I+AVTG+ GK+S+ +F+ Q+ Q      F++  T    +T++    D    L++ + IY+
Sbjct: 164 IIAVTGSYGKTSLKNFLVQVLQ----DEFKVYATPRSVNTLTGIIADINQNLSSLTDIYI 219

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A               A   G  +  ++ IK        +G  HI+Y ++    + AK
Sbjct: 220 VEA--------------GARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAK 265

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIH--- 286
             +       +SP             +++ +N         + G  I   + V ++    
Sbjct: 266 YEIL------QSPN------------LQKVYNYKDNTPPQNFYGNMIWFPQNVSSVDTSL 307

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N    +++  G+  DF   + G F V N   A  +    GI S  +++ + ++  V  R 
Sbjct: 308 NGTSFSLTYNGEKMDFETKILGAFNVANISAAIQVAKDFGISSERIIKQVCRMEGVSHRL 367

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGK 404
             +  N    ++ +D ++  N L+ +L+ IR  ++  GR ++V    G  +  K      
Sbjct: 368 SKIMVND---KVILDDSYNGN-LDGMLEAIRLSSLYDGRKVIV--TPGLVESSKE---AN 418

Query: 405 IALDLA-----DIAIVTDD 418
           IAL  A     DIAI+T +
Sbjct: 419 IALAEAIDRVFDIAIITGE 437


>gi|46203167|ref|ZP_00051951.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 341

 Score = 37.0 bits (84), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 25/142 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  +    + + +G    Q+G     +  +    L  P+P  +       
Sbjct: 129 VAITGTNGKSTTTALTAHLLRHAG-RDVQMGGNIGTAILS----LQPPAPNRV------- 176

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 HV +E SS  +D      +    G   NL  DH+D H T + Y   K    E L
Sbjct: 177 ------HV-IELSSFQIDL--TPSLAPSIGILLNLTPDHLDRHGTMENYAAIK----ERL 223

Query: 238 LPKESPAIIYADDAYSKEVMKR 259
           +     A++  DDAY   + +R
Sbjct: 224 IAGAELAVVGVDDAYCAAIAER 245


>gi|312869526|ref|ZP_07729681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           oris PB013-T2-3]
 gi|311094973|gb|EFQ53262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           oris PB013-T2-3]
          Length = 458

 Score = 37.0 bits (84), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  +H+DYH+T++ Y NAK+ +     P +   + +  D + +E+ +R       V+ 
Sbjct: 188 TNIFSNHLDYHKTRENYINAKLNITRNQTPDDFLIMNWDRDEW-QEIARRTR---ATVVP 243

Query: 270 VGYQGK 275
              QGK
Sbjct: 244 FSRQGK 249


>gi|238754435|ref|ZP_04615790.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
 gi|238707264|gb|EEP99626.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
          Length = 476

 Score = 37.0 bits (84), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 132/344 (38%), Gaps = 66/344 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+        L   R +G      +AV GT GK+
Sbjct: 64  ASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRYR-HG------IAVAGTHGKT 116

Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGV 182
           +  + V  I   +GL  +F  G    + +     RL + S   +A+A     S+L  Q +
Sbjct: 117 TTTAMVSSIYAEAGLDPTFVNG--GLVKAAGVHARLGS-SRYLIAEADESDASFLHLQPM 173

Query: 183 THV--SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEE 236
             +  ++EA          D ++   G F NL +  I++      Y  A M     +  E
Sbjct: 174 VAIVTNIEA----------DHMETYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVVRE 223

Query: 237 LLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           LLP+    I    ++DDA  +    R          +G QG F   ++     +K  +T+
Sbjct: 224 LLPRVGRHITTYGFSDDADVQIASYR---------QIGPQGHFTLRRQ-----DKSLLTV 269

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
           ++           PG     NA  A  +    GID   +L  L        RF+F+G   
Sbjct: 270 TLNA---------PGRHNALNAAAAVAVATEEGIDDEAILRALSSFQGTGRRFDFLGNFP 320

Query: 352 ----NSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
               N + G + +  DY H    +   +K  R      RI++VF
Sbjct: 321 LEKVNGKSGSVMLVDDYGHHPTEVSATIKAARAGWPDKRIVMVF 364


>gi|219870392|ref|YP_002474767.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
 gi|254766005|sp|B8F3B7|MURC_HAEPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219690596|gb|ACL31819.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
          Length = 475

 Score = 37.0 bits (84), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 132/340 (38%), Gaps = 59/340 (17%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA  +V SSA   S  + +A   +  P++      +   + A  +  +H    +A+ GT
Sbjct: 76  EGASVVVASSAINESNPEVAAAKEARIPVI------QRAQMLAEIMRFRHG---IAIAGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
            GK++  + +  I   +GL    +     +   A  N     S   +A+A     S+L  
Sbjct: 127 HGKTTTTAMISMIYTEAGLDPTFV--NGGLVKSAGKNAHLGASRYLIAEADESDASFLHL 184

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q +  V                        TN+  DH+D +             F   LP
Sbjct: 185 QPMVSV-----------------------VTNIEPDHMDTYGGDFEKMKETYVRFLRNLP 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-------T 292
               A++ ADD   + VM+ A   G +V+S G+  K  +      I + QQ         
Sbjct: 222 FYGLAVMCADD---ETVMEIAPKVGRQVISYGFSEKADY-----RIEDYQQTGFQGHYTV 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +   G+  + L  +PG     NA  A  +    GI +  +L  L        RF+ +G+ 
Sbjct: 274 VCPTGERIEILLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 353 SR-GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            R  G++ +  DY H    +++ +K  R    + R+++VF
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVF 373


>gi|325578820|ref|ZP_08148867.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159644|gb|EGC71776.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 475

 Score = 37.0 bits (84), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 132/335 (39%), Gaps = 49/335 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAV 120
           QGA  +VVSSA         I  + P L+     +        + A  +  +H    +AV
Sbjct: 76  QGASVVVVSSA---------IHEDNPELIAAKQNRIPVIQRAQMLAEIMRFRHG---IAV 123

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++  + +  I  ++ L      PT     F     + +        A  YL ++
Sbjct: 124 AGTHGKTTTTAMISMIYTQAKLD-----PT-----FVNGGLVKSAGKNAHLGASRYLIAE 173

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                + E+ +  L       ++ +    TN+  DH+D ++       A    F   LP 
Sbjct: 174 -----ADESDASFLH------LQPMVSVVTNIEPDHMDTYEGDFEKMKATYVKFLHNLPF 222

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGK 298
              A++ ADD    E++ +    G +VL+ G+ +    H++       +   T+    G+
Sbjct: 223 YGLAVMCADDTVLMELVPQV---GRQVLTYGFSEHADYHIEDYEQTGFQGHYTVVCPSGE 279

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSR 354
             + L  +PG+    NA  A  +    GI +  +LE L        RF    EF+  N +
Sbjct: 280 RINVLLNVPGKHNALNATAALAVAKEEGIGNEAILEALADFQGAGRRFDQLGEFIRPNGK 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             R+  DY H    + + +K  R      RI+++F
Sbjct: 340 -VRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIF 373


>gi|256830370|ref|YP_003159098.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579546|gb|ACU90682.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
          Length = 458

 Score = 37.0 bits (84), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 122/313 (38%), Gaps = 34/313 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S +  I   + L      PT  I       RL        A   + +
Sbjct: 108 VAVAGTHGKTTTTSLLATIFMEAHLD-----PTVIIG-----GRLN-------AYGSNAM 150

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG   ++    S G     L  I ++    TN+  DH+DY++      ++ +  F   
Sbjct: 151 LGQGRYLIAEADESDGSFLCLLPRISIV----TNVDADHLDYYKDLDEIRDSFVD-FMNS 205

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P     ++  DD   + ++ R       V++ G+  +     ++ +     +  +  + 
Sbjct: 206 VPFYGLNVVCGDDKGVQSILSRVRRP---VMTYGFGEENDLRAEIISCEAGSRFNVYRQS 262

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + + +     PG   V NAL A G+ +  G+    ++  L     V  RFE  G   R G
Sbjct: 263 EFWGEVTLTHPGRHNVLNALAAIGVAMEAGVPKKDIIHGLGAFAGVGRRFEHKG--ERNG 320

Query: 357 RIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DI 412
            + V DY H    +   L+  R      R++V F     R    + + G  +   A  D 
Sbjct: 321 VLVVDDYGHHPTEIAATLETARLCYPHKRLVVAFQP--HRFTRTQALFGDFSKVFAGVDQ 378

Query: 413 AIVTDDNPRSEDP 425
            ++T+  P SE P
Sbjct: 379 LLLTEIYPASESP 391


>gi|148992591|ref|ZP_01822259.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP9-BS68]
 gi|168484938|ref|ZP_02709883.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1873-00]
 gi|168488818|ref|ZP_02713017.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP195]
 gi|147928608|gb|EDK79622.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP9-BS68]
 gi|172041914|gb|EDT49960.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1873-00]
 gi|183572646|gb|EDT93174.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP195]
 gi|332072314|gb|EGI82797.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA17570]
 gi|332200083|gb|EGJ14156.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA47368]
          Length = 444

 Score = 37.0 bits (84), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEVEGNDFVASDLLRSITGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|85374297|ref|YP_458359.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
 gi|84787380|gb|ABC63562.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
          Length = 476

 Score = 37.0 bits (84), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 30/278 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E  +A+ GTSGKS+V   +  I   +G     I   + + +F  + R         A A+
Sbjct: 119 ETGVAIAGTSGKSTVTGMLGWILHHAGREP-TIMNGAVMKNFVSEGR-------PFASAV 170

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                  V+ V     S  L Q ++       G   N+  DH    + +         LF
Sbjct: 171 IGGVDLYVSEVDESDGSIALYQPKV-------GLLLNVSLDHKSMEELRT--------LF 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL----KKVCAIHNKQQ 290
            + +     A+I ADD  + ++  RA +A     ++  +G  I +    +    +     
Sbjct: 216 GDYVEASDIAVINADDDEAIQLEGRADDA--ITFAIYDKGASIGVVDGSRADGPVRQAAT 273

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V    +  +   +  +PG   + NAL A     A G+  A  +  L +   +  RF+ +G
Sbjct: 274 VIDRRDDSEHALVLHMPGRHNLSNALAAIAGASAAGVQVADAVAALAEFKGLARRFDIIG 333

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           T++ G  +  D+ H        L+ ++    GR++  F
Sbjct: 334 TSASGITVIDDFGHNPEKCRATLRTLKA-HPGRVLAFF 370


>gi|53729121|ref|ZP_00134085.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207504|ref|YP_001052729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae L20]
 gi|307249215|ref|ZP_07531212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|126096296|gb|ABN73124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|306858739|gb|EFM90798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 436

 Score = 37.0 bits (84), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 23/120 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG +GKS+V + V ++ +++G+   ++G    I             P+     LS 
Sbjct: 108 IIAITGANGKSTVTTLVTEMAKQAGI---KVGMGGNIG-----------VPV-----LSL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L+ +    V +E SS  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++
Sbjct: 149 LNDEYELFV-LELSSFQLETT--SSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYD 205


>gi|324112496|gb|EGC06473.1| UDP-N-acetylmuramate-alanine ligase [Escherichia fergusonii B253]
          Length = 491

 Score = 37.0 bits (84), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 103/281 (36%), Gaps = 56/281 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  + V  I   +GL      PT       +            A  +   
Sbjct: 122 IAIAGTHGKTTTTAMVSSIYAEAGLD-----PTFVNGGLVK------------AAGVHAR 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   ++    S     H    ++ +    TN+  DH+D +Q            F   
Sbjct: 165 LGHGRYLIAEADESDASFLH----LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 238 LPKESPAIIYADDAYSKEVMKR----------AHNAGCRV---LSVGYQGKFIHLKKVCA 284
           LP    A++  DD   +E++ R          + +A  RV     +G QG F  L++   
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPRVGRQITTYGFSEDADVRVEDYQQIGPQGHFTLLRQ--- 277

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             +K+ + +++           PG     NA  A  +    GI+  ++L  LE       
Sbjct: 278 --DKEPLRVTLNA---------PGRHNALNAAAAVAVATEEGIEDDVILRALESFQGTGR 326

Query: 345 RFEFVG------TNSRGGRIYV--DYAHTSNSLEMILKNIR 377
           RF+F+G       NS+ G   +  DY H    ++  +K  R
Sbjct: 327 RFDFLGEFPLNPVNSKSGTAMLVDDYGHHPTEVDATIKAAR 367


>gi|225387337|ref|ZP_03757101.1| hypothetical protein CLOSTASPAR_01090 [Clostridium asparagiforme
           DSM 15981]
 gi|225046549|gb|EEG56795.1| hypothetical protein CLOSTASPAR_01090 [Clostridium asparagiforme
           DSM 15981]
          Length = 448

 Score = 37.0 bits (84), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 37/206 (17%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLF-----EELL---------PKESPAIIYADDAY 252
           G   N+  +H+D++ T + Y  AK R+F     +++L         P E P+ +      
Sbjct: 175 GVLINIHEEHLDHYGTMEKYVAAKHRIFRNQDSDDILVCNMQCLPEPGECPSRLI----- 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              V     +A   V + G  G F+     C  +   +  I            L G+   
Sbjct: 230 --RVGTNRPDADVNVDNCGENGTFVDYG--CRRYRIPETEIR-----------LLGQHNY 274

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           ++  V   +C  +GI  A   E L+    +P R +++G   R G  Y D +  S      
Sbjct: 275 FDIAVVYAVCGLLGIGEAAFTEGLKSYEPLPHRLQYLG--QRDGVKYYDDS-ISTICATT 331

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGK 398
           ++ ++T+T    +++ G     D G+
Sbjct: 332 IQALKTLTDADTVLIGGMDRGIDYGE 357


>gi|165975474|ref|YP_001651067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|303251838|ref|ZP_07338009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307249139|ref|ZP_07531146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|165875575|gb|ABY68623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649268|gb|EFL79453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854427|gb|EFM86623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 436

 Score = 37.0 bits (84), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 23/120 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG +GKS+V + V ++ +++G+   ++G    I             P+     LS 
Sbjct: 108 IIAITGANGKSTVTTLVTEMAKQAGI---KVGMGGNIG-----------VPV-----LSL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L+ +    V +E SS  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++
Sbjct: 149 LNDEYELFV-LELSSFQLETT--SSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYD 205


>gi|114330275|ref|YP_746497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
 gi|122314675|sp|Q0AJD9|MURD_NITEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|114307289|gb|ABI58532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
          Length = 470

 Score = 37.0 bits (84), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 18/137 (13%)

Query: 102 LSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + LFA  L    P    ILA+TG++GK++VA+ V ++ + +G      G     +  A  
Sbjct: 98  IELFAIALDQHAPPGTKILAITGSNGKTTVATMVGEMARNTGWDVEVAGNIGLAALDALM 157

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
            R+ T    +L                +E SS  L+      ++  A    NL  DH+D 
Sbjct: 158 QRIDTGKWPHLW--------------VLELSSFQLET--TSSLRPNAAVVLNLSEDHLDR 201

Query: 220 HQTQQAYFNAKMRLFEE 236
           ++  + Y  AK R+F +
Sbjct: 202 YRIIEEYAAAKARIFPD 218


>gi|196232259|ref|ZP_03131113.1| UDP-N-acetylmuramate [Chthoniobacter flavus Ellin428]
 gi|196223627|gb|EDY18143.1| UDP-N-acetylmuramate [Chthoniobacter flavus Ellin428]
          Length = 461

 Score = 37.0 bits (84), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 171/434 (39%), Gaps = 67/434 (15%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASR----LYGKH 113
           + P+ +   A+ IVV +A S        R N  I  V N +  +LSL  +     L GKH
Sbjct: 58  YKPENLPANADLIVVGNAIS--------RGNPEIEAVLNRKLYYLSLPETLKQFFLRGKH 109

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L VTGT GK++  S +  I + +GL+     P   I   A++          L + 
Sbjct: 110 N---LVVTGTHGKTTTTSLLTWILKSAGLN-----PAYMIGGIAKN----------LGQG 151

Query: 174 LSYLSSQGVTHVSVEASSHGLDQ-----HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            S   ++ V     E  +   D+     H L  + ++     N+  DH D      A   
Sbjct: 152 ASLHDARHVVLEGDEYDTAFFDKRSKFLHYLPELVIV----NNIEFDHADIFDNLDA-IK 206

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHN 287
              R    ++P+    +I  DD   K  +  A N   +++ VG+      H+K V    +
Sbjct: 207 LSFRRLLNIVPESGMVLINGDD---KNCIDVAENCRAQLVEVGFSANASRHIKDVAYDAH 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+     D  F   + GE+ V NA +A       GI  + + + +     V  R E
Sbjct: 264 GSAFTL----LDTRFTIQMVGEYNVRNAAMAISAAHFYGIPLSAIAKAVAAFEGVKRRQE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRD-----QGKRPI 401
             G   RG  +  D+ H   ++   L+ +R    S R+  +F    +       Q + P 
Sbjct: 320 VRG-EVRGMTVIDDFGHHPTAIRETLRGLRHQYPSRRLWAIFEPRSNTTRRAVFQHELPA 378

Query: 402 M-----GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM 455
                 G I   +A +  +  DN    DP K+ A+I   G P F E    + AI   ++ 
Sbjct: 379 ALGEADGVILAQVARMDQLAADN--RLDPAKVVADIAATGRPAFYEPD--VTAIIARLKP 434

Query: 456 LNKQ-DVLVVAGKG 468
           L K+ DV+V+   G
Sbjct: 435 LVKERDVIVILSNG 448


>gi|190149285|ref|YP_001967810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262598|ref|ZP_07544228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914416|gb|ACE60668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872021|gb|EFN03735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 436

 Score = 37.0 bits (84), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 23/120 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG +GKS+V + V ++ +++G+   ++G    I             P+     LS 
Sbjct: 108 IIAITGANGKSTVTTLVTEMAKQAGI---KVGMGGNIG-----------VPV-----LSL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L+ +    V +E SS  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++
Sbjct: 149 LNDEYELFV-LELSSFQLETT--SSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYD 205


>gi|115350513|ref|YP_772352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria AMMD]
 gi|115280501|gb|ABI86018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia ambifaria AMMD]
          Length = 468

 Score = 37.0 bits (84), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 33/229 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FVA+ G++ D H F+      G  A   ++A  +    A +    P+
Sbjct: 29  VSTDSRTVGPGDLFVALKGDRFDAHDFL------GDVAARGAAAALVAHVPAGL--AMPV 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +    TR  L   A     +    ++AVTG++GK++V   +  I                
Sbjct: 81  VEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASIFA-------------- 126

Query: 153 ISSFAQDNRLTTPSPIY--LAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIAGS 208
            ++   D RL T   +   +   L+ L   G   V+V     +H  +   L   +L A +
Sbjct: 127 -AAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEIL--ARLAAPT 183

Query: 209 FT---NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                N  R+H ++  T +A       +   L P +  A+  ADDAY+ 
Sbjct: 184 VALVNNAQREHQEFMATVEAVALEHAAVIHALTP-DGVAVFPADDAYAS 231


>gi|300726265|ref|ZP_07059718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
 gi|299776462|gb|EFI73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
          Length = 434

 Score = 37.0 bits (84), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 149/369 (40%), Gaps = 44/369 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91
           V++DSR      IF+A+ G   DG+ F   A+ +G   AI+    Y+       +  ++ 
Sbjct: 16  VTTDSRDCPQDSIFIALKGESFDGNKFAASALEKGCSYAIIDEKEYA-------VEGDSR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++ DNT   L+ F         +  + V G +G +   +  + +   S + S +     
Sbjct: 69  YILTDNT---LTTFKELAREHRRQFDIPVIGITGTNGKTTTKELV---SAVLSEKYNVMH 122

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIAGSFT 210
           T  +F  D        I + K L  L+ +    V    +SH  D   L   ++   G  T
Sbjct: 123 TEGNFNND--------IGVPKTLLRLNKEHEIAVVEMGASHPGDIDVLVKYVEPTCGMIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---KEVMKRAHNAGCRV 267
           N+GR H+    + +     K  L++ L   E+ A+++ +++     K V +R  N   RV
Sbjct: 175 NVGRAHLLGFGSFEGVKKTKGELYDFL--AENDALVFLNESNPHLVKMVQQRNIN---RV 229

Query: 268 LSVGY------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           ++ G       QG+ +     CA   K       E + ++    L G + + N L A  +
Sbjct: 230 ITYGQDEDANIQGEVLS----CAPFLKFNWRKEGEPQLYEVQTQLIGAYNIDNMLAAITI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +  G+D   +   LE       R +   T +   ++ VD Y    +S+   L+N + + 
Sbjct: 286 GLHFGVDPVQINHALENYCPSNNRSQL--TVTENNKLIVDAYNANPSSMAAALENFKVMA 343

Query: 381 SGRIIVVFG 389
               + + G
Sbjct: 344 VSPKMAILG 352


>gi|111115652|ref|YP_710270.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia afzelii PKo]
 gi|216263556|ref|ZP_03435551.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
 gi|123341262|sp|Q0SM34|MURC_BORAP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110890926|gb|ABH02094.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii PKo]
 gi|215980400|gb|EEC21221.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
          Length = 468

 Score = 37.0 bits (84), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 33/221 (14%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLY 110
           E+ + F  + + +  + IV SSAY      A + +   N PIL   +  + L   + + Y
Sbjct: 59  ENIYEFSLKELGRSFDLIVYSSAYDKYGLPALLEAKELNIPIL---SYSEVLGELSRKYY 115

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  + + G+ GK++  +F+  +  + GL+   +   S++  F  ++ +   S I++
Sbjct: 116 S------VGIAGSHGKTTTTAFLGLLFNKLGLNP-NVIVGSSVKDFGDNSAIAGISNIFI 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           A+   Y   +   H S                 LI    TN+  +H+D+ +  +A  +A 
Sbjct: 169 AETCEY--KKHFLHFSPNM--------------LI---LTNIDYEHVDFFENYEALEDAF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           ++     L K    II +DD    ++ ++ +     + S G
Sbjct: 210 LQYINN-LKKNGILIINSDDNNLLKIKRQINRKDINIFSFG 249


>gi|308233776|ref|ZP_07664513.1| UDP-N-acetylmuramate--alanine ligase [Atopobium vaginae DSM 15829]
 gi|328943775|ref|ZP_08241240.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae DSM
           15829]
 gi|327491744|gb|EGF23518.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae DSM
           15829]
          Length = 470

 Score = 37.0 bits (84), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 112/281 (39%), Gaps = 29/281 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+++T           F +L+      ++  ++ +  E+ +  +     V++
Sbjct: 184 TNIEADHLDHYKTMDN-LEHTFCEFMDLVGDAGTIVVCGENHHCVELARSTNR---HVVT 239

Query: 270 VGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAI 325
            G+     ++ K     +K +   V  + +G       P  PG+  V NA     +   +
Sbjct: 240 YGFDETCDYVCKQTVQSHKIRNNFVVCAPDGSCLSISLPANPGKHNVLNATATMAVADVL 299

Query: 326 GI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           G+   D+A  L + +  H    RF  VG       +  DY H    ++  L   + +   
Sbjct: 300 GVNLQDAAHALSNFKGAH---RRFTHVGDIDD-ICVVDDYGHHPTEIKATLAAAKNLEFN 355

Query: 383 RIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----------EKIRAE 431
           RI+ VF      R Q  +      A D AD+ IVT+     E P          EKI+A 
Sbjct: 356 RIVCVFQPHRYSRTQNLQDEFAH-AFDDADVLIVTEVFSAGETPIPGVNGMMLAEKIQAS 414

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
             H    F+ +  + + +   + ++   D+++  G G  T+
Sbjct: 415 TKHCDVTFVSQ--KKDVVAHLLSIVRPHDLIITQGAGDVTM 453


>gi|307244817|ref|ZP_07526916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253771|ref|ZP_07535625.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258228|ref|ZP_07539971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260467|ref|ZP_07542162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306854262|gb|EFM86468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863255|gb|EFM95195.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867688|gb|EFM99533.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869870|gb|EFN01652.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 436

 Score = 36.6 bits (83), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 23/120 (19%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG +GKS+V + V ++ +++G+   ++G    I             P+     LS 
Sbjct: 108 IIAITGANGKSTVTTLVTEMAKQAGI---KVGMGGNIG-----------VPV-----LSL 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           L+ +    V +E SS  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++
Sbjct: 149 LNDEYELFV-LELSSFQLETT--SSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYD 205


>gi|168187611|ref|ZP_02622246.1| folylpolyglutamate synthase [Clostridium botulinum C str. Eklund]
 gi|169294519|gb|EDS76652.1| folylpolyglutamate synthase [Clostridium botulinum C str. Eklund]
          Length = 436

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 20/188 (10%)

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIG--IDSALVLEHLEKLHVVP 343
           Q + I+V+  +++    L G+ Q+ N    L A      +G  I +  ++  L K+  + 
Sbjct: 244 QNIIINVDNNEYNINLALLGKHQILNCTTVLYAVNELKKMGVVISNTSIINALIKVKWM- 302

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIM 402
           GRFE +  +     + +D AH  + +  + ++I T  S + I+++ G   D+       M
Sbjct: 303 GRFEILNNDPT---VIIDGAHNIDGITKLKESIDTYVSYKDIVLILGILNDKQVED---M 356

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNK 458
            K+    A + I     P SE  E I  E++  +  +      IE    A  TA+   N+
Sbjct: 357 VKVITPSAKMVICV--TPHSERAE-IAKELMRSVKTYNSNCIAIEDYKTAYETALNYCNR 413

Query: 459 QDVLVVAG 466
           +D+L+++G
Sbjct: 414 EDLLLISG 421


>gi|52425724|ref|YP_088861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mannheimia
           succiniciproducens MBEL55E]
 gi|62900506|sp|Q65RY4|MURD_MANSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52307776|gb|AAU38276.1| MurD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 439

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 26/144 (18%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TG++GKS+V + V ++ + +GLS   +G    I                   ALS 
Sbjct: 107 VIAITGSNGKSTVTALVTEMGKAAGLS---VGMGGNIG----------------IPALSL 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+     +V +E SS  L+      +K  A +  N+  DH++ +   + Y  AK+ ++  
Sbjct: 148 LNENHDLYV-LELSSFQLETTY--SLKATAATVLNVTEDHMNRYADLEEYRQAKLNIYHH 204

Query: 237 LLPKESPAIIYADDAYSKEVMKRA 260
                  A+I  +D  +KE  K++
Sbjct: 205 C----QTAVINGEDPLTKEDDKQS 224


>gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD]
          Length = 741

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 60/279 (21%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI------CQRSG----- 141
           L+VD+T KFL   A      H    + +TG++GK+ V  ++ Q       C +S      
Sbjct: 9   LIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCVKSPKSFNS 68

Query: 142 -----LSSFQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                LS   I P   +  F    ++ N +TT   I+  K                    
Sbjct: 69  QIGLPLSLLNIKPEHKVGIFEVGISEPNEMTTLETIFSPKI------------------- 109

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                         G  T++G  HI   ++++   + K+ LF     K+S +II+  D  
Sbjct: 110 --------------GVLTHIGSAHISNFKSEKHLVDEKISLF-----KDSESIIFNGDNI 150

Query: 253 SKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                     +   ++S G+ +   IH+        +Q +T+    K F F      E  
Sbjct: 151 LVSNKINTLYSSKNLISYGFNKDNNIHISSNWK-DRQQPITVQCFDKSFSFPAQQRDEAT 209

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + N L    +   +   +  ++E +  L  V  R E V 
Sbjct: 210 LSNVLAIIAVMHLLEFSTEKMIEKINNLKAVEMRLESVN 248


>gi|28493193|ref|NP_787354.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Tropheryma
           whipplei str. Twist]
 gi|28476234|gb|AAO44323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei str. Twist]
          Length = 528

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 21/118 (17%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GK++ A     +  + G      G   T              P+  A      + 
Sbjct: 173 ITGTNGKTTTALLTGSMLAKDGARVAVCGNIGT--------------PVLDA----VRNP 214

Query: 180 QGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +G  ++ VE SS  L     H    +K  + +  NL  DH+++H  ++ Y+ AK R++
Sbjct: 215 KGFDYLVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYYCAKSRVY 272


>gi|54295408|ref|YP_127823.1| hypothetical protein lpl2494 [Legionella pneumophila str. Lens]
 gi|53755240|emb|CAH16734.1| hypothetical protein lpl2494 [Legionella pneumophila str. Lens]
          Length = 2106

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 16/128 (12%)

Query: 342  VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR-DQGK-- 398
            +P R++F G NSR           SN +E +L+  R      I +  G  GD  D G   
Sbjct: 1719 LPERYQFFGVNSR--------VECSNVVEAVLRTSRKFPESNITLFAGGAGDELDFGASN 1770

Query: 399  -RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             R ++ +IA     +++V + +  S      R    H + G IE   R  ++ T  E+  
Sbjct: 1771 LRNLIYQIAASNRSVSLVIEKDSLSSMDMVER----HLLAGLIEYPGRKISLHTVTELPK 1826

Query: 458  KQDVLVVA 465
             +D +++A
Sbjct: 1827 TKDAIILA 1834


>gi|33603367|ref|NP_890927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella bronchiseptica
           RB50]
 gi|33577491|emb|CAE34756.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella bronchiseptica RB50]
          Length = 456

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 125/316 (39%), Gaps = 42/316 (13%)

Query: 86  IRSNTPIL--VVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRS 140
           +    P++  ++D+  +++S    +  G+H     ++LAV GT GK++ +S +  I Q +
Sbjct: 71  VSRGNPLMEAILDSGARYIS--GPQWLGEHILPGAHVLAVAGTHGKTTTSSMLAWILQCA 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL----DQ 196
                Q  P   I   A D ++            S   + G     +EA  +       +
Sbjct: 129 -----QRQPNFLIGGVAPDLQV------------SARYAPGARPFVIEADEYDTAFFDKR 171

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            +    +       NL  DH D      A    +       +P     ++  D    + V
Sbjct: 172 SKFVHYRPRTAILNNLEYDHADIF-PDLAAIETQFHHLVRTVPSNGQLVLPTDAPALERV 230

Query: 257 MKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVY 313
           ++R    GC   V   G  G++    +      +    +SV+G+D   + + L GE    
Sbjct: 231 LER----GCWTPVARFGPGGQW----QAGPADEQGAFEVSVDGRDAGTVRWTLGGEHNRR 282

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A       G+  A  +E L +   V  R E  GT + G R+Y D+AH   ++   +
Sbjct: 283 NALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGTVN-GIRVYDDFAHHPTAIATTI 341

Query: 374 KNI-RTITSGRIIVVF 388
           + + R + + RI+ V 
Sbjct: 342 EGLRRQVGAARILAVL 357


>gi|260591742|ref|ZP_05857200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
 gi|260536026|gb|EEX18643.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
          Length = 443

 Score = 36.6 bits (83), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 128/321 (39%), Gaps = 55/321 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +G   + +G    I +         P   Y+      
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKDAG---YDVGLAGNIGNSLALQVAEDPHAYYI------ 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFE 235
                     +E SS  LD   +   +       N+  DH+D +  + + Y +AKMR+ +
Sbjct: 155 ----------IELSSFQLDN--MYNFRANIAILLNITPDHLDRYDFKFENYADAKMRIIQ 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-------SVGY--QGKFIHLKKVCAIH 286
                +S      D    KE+ K   +A C          S+GY  +G++    K+    
Sbjct: 203 NQTKDDSFIYWNDDPVIKKELKKYDVHAVCYPFSELKEHGSIGYIEEGQY----KI---- 254

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGR 345
            +Q    ++E +D      L G   +YN+L AAG+   I GI    + + L     V  R
Sbjct: 255 -EQPEPFNMEQED----LSLTGRHNIYNSL-AAGIASNISGIKKESIRKSLSDFPGVEHR 308

Query: 346 FEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            E V      G  Y++ +  +N  +    L+++RT T    I++ G G D+      I  
Sbjct: 309 LEKVC--KVAGVQYINDSKATNVDACWYALESMRTPT----ILILG-GKDKGNDYSAIKD 361

Query: 404 KIALDLADIAIVTDDNPRSED 424
            +      +  +  DN +  D
Sbjct: 362 LVKEKCTGLVYLGADNKKLHD 382


>gi|33593931|ref|NP_881575.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella pertussis Tohama
           I]
 gi|33598427|ref|NP_886070.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella parapertussis
           12822]
 gi|33564005|emb|CAE43271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella pertussis Tohama I]
 gi|33574556|emb|CAE39203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella parapertussis]
 gi|332383350|gb|AEE68197.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella pertussis CS]
          Length = 456

 Score = 36.6 bits (83), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 125/316 (39%), Gaps = 42/316 (13%)

Query: 86  IRSNTPIL--VVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRS 140
           +    P++  ++D+  +++S    +  G+H     ++LAV GT GK++ +S +  I Q +
Sbjct: 71  VSRGNPLMEAILDSGARYIS--GPQWLGEHILPGAHVLAVAGTHGKTTTSSMLAWILQCA 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL----DQ 196
                Q  P   I   A D ++            S   + G     +EA  +       +
Sbjct: 129 -----QRQPNFLIGGVAPDLQV------------SARYAPGARPFVIEADEYDTAFFDKR 171

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            +    +       NL  DH D      A    +       +P     ++  D    + V
Sbjct: 172 SKFVHYRPRTAILNNLEYDHADIF-PDLAAIETQFHHLVRTVPSNGQLVLPTDAPALERV 230

Query: 257 MKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVY 313
           ++R    GC   V   G  G++    +      +    +SV+G+D   + + L GE    
Sbjct: 231 LER----GCWTPVARFGPGGQW----QAGPADEQGAFEVSVDGRDAGTVRWTLGGEHNRR 282

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A       G+  A  +E L +   V  R E  GT + G R+Y D+AH   ++   +
Sbjct: 283 NALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGTVN-GIRVYDDFAHHPTAIATTI 341

Query: 374 KNI-RTITSGRIIVVF 388
           + + R + + RI+ V 
Sbjct: 342 EGLRRQVGAARILAVL 357


>gi|330981219|gb|EGH79322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 448

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 26/133 (19%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA   Y K P  ++A+TG++ KS+V + V ++   +G               A    
Sbjct: 100 IELFAR--YAKAP--VIAITGSNAKSTVTTLVGEMAAAAG------------KRVAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L TP       AL  LS +   +V +E SS  L+    D +     +  N+  DH+D + 
Sbjct: 144 LGTP-------ALDLLSDEVELYV-MELSSFQLET--TDQLNAEVATVLNISEDHMDRYN 193

Query: 222 TQQAYFNAKMRLF 234
              AY  AK R+F
Sbjct: 194 GLPAYHLAKHRIF 206


>gi|89897954|ref|YP_515064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
 gi|89331326|dbj|BAE80919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
          Length = 448

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 162/396 (40%), Gaps = 45/396 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +Q ++ +D+  L+     +P     RKI+ V+ DSR ++ G +F A+ G   DGH F+ Q
Sbjct: 1   MQSILLEDWVSLMLSDVKYPRS--GRKISGVAIDSRQVRPGDLFFALSGQCTDGHHFLKQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A VVS  Y    F         ++VV +T + L              I+ +TG
Sbjct: 59  AAQAGAVAAVVSKDYCGDSFGLD------LVVVQDTTEALKEAGENQGHLFQGTIVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++  +F +     S +      P S       +++LT P  + +A        +  
Sbjct: 113 SIGKTTTKTFAKTFL--SSVYRVYASPKSY------NSQLTVPLSLLMADG-----DEDF 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDY-HQTQQAYFNAKMRLFE----E 236
             + +  S  G  +  L  ++      TN+   H I++  Q  +     K  + +    +
Sbjct: 160 IILEMGVSEPGNMRDLLSIVEPEISVITNIADQHAINFPDQGVRGIAEEKSHILQTSRIQ 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LLPK+SP        +    +K++ ++     +   +    + K +     K  V IS  
Sbjct: 220 LLPKDSP--------WYSHFIKQSPSSEKFSFAFYNETADFYYKAI----QKDSVIISTP 267

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D DF    P +    N L++  L   + +    ++     L + P RFE    + R G
Sbjct: 268 EGDVDFAVSFPYKPAYSNLLISFSLAWLLDVPVDRIIHSCSDLQLPPMRFEL---SMRNG 324

Query: 357 RIYVDYAHTSNSLEMI--LKNIRTITS-GRIIVVFG 389
              ++ A+ +    MI  L  I   +  G++I++ G
Sbjct: 325 IQVINDAYNACPEAMIAALDAIPNPSEGGKVILILG 360


>gi|329954172|ref|ZP_08295267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
 gi|328528149|gb|EGF55129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
          Length = 444

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 32/268 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +GL+   +G    I +       +    + + K   Y
Sbjct: 104 MICITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGN-------SLALQVAMEKHDYY 153

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
           +         +E SS  LD   +   +       N+  DH+D Y    Q Y +AK R+ +
Sbjct: 154 V---------IELSSFQLDN--MYKFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQ 202

Query: 236 ELLPKESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              P++  A IY +D     +E+ K    A     +   +   I   +   +   + +  
Sbjct: 203 NQTPED--AFIYWNDDPIIRRELEKHGLKAHLYPFAAVKEDGAIAYVEDGEVEINEPIAF 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++E ++      L G   +YN+L A       GI    + + L     V  R E V T  
Sbjct: 261 NMEQEE----LALHGTHNLYNSLAAGISANLAGIRKEDIRKALSDFKGVEHRLEKVAT-V 315

Query: 354 RGGRIYVDYAHTS-NSLEMILKNIRTIT 380
           RG +   D   T+ NS    L+++ T T
Sbjct: 316 RGIQFINDSKATNVNSCWYALQSMTTKT 343


>gi|123967558|ref|YP_001008416.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           AS9601]
 gi|123197668|gb|ABM69309.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 449

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYA 363
           P+PG   + N   A      IG+D   + ++++ L +   RFEF G  + R   +Y DYA
Sbjct: 258 PIPGLHNLSNITAAIAASRMIGVDFIEIKKNIKYLKLPKKRFEFRGQIDERS--LYDDYA 315

Query: 364 HTSNSLEMILKNIRTITSGRIIV 386
           H  N ++       TI  GR+++
Sbjct: 316 HHPNEIK------ETIKLGRLLI 332


>gi|330895229|gb|EGH27567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 448

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 26/133 (19%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           + LFA   Y K P  ++A+TG++ KS+V + V ++   +G               A    
Sbjct: 100 IELFAR--YAKAP--VIAITGSNAKSTVTTLVGEMAAAAG------------KRVAVGGN 143

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L TP       AL  LS +   +V +E SS  L+    D +     +  N+  DH+D + 
Sbjct: 144 LGTP-------ALDLLSDEVELYV-MELSSFQLET--TDQLNAEVATVLNISEDHMDRYN 193

Query: 222 TQQAYFNAKMRLF 234
              AY  AK R+F
Sbjct: 194 GLPAYHLAKHRIF 206


>gi|297170218|gb|ADI21256.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured
           myxobacterium HF0010_08B07]
          Length = 356

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 27/121 (22%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALS 175
           + VTGT+GKS++ +++ QI   +  SS  +G      + +    N+ T            
Sbjct: 95  IGVTGTNGKSTLVNYLNQILNIAS-SSIALGNIGNPLLDNIKHTNKYTV----------- 142

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +E SS  L++ + +         TN+  DHID+H   + Y NAK+++  
Sbjct: 143 -----------IEVSSFQLEKMKKNYFDF--SIITNIQNDHIDFHGNFENYKNAKLKICS 189

Query: 236 E 236
           E
Sbjct: 190 E 190


>gi|326775888|ref|ZP_08235153.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656221|gb|EGE41067.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 466

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 14/217 (6%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHN-AGCRVLSVG 271
           H +Y    + Y +     FE  + K  P    ++ AD   + E+ +R  + +  +V++ G
Sbjct: 191 HANYASMDEIYDS-----FETFVGKVVPGGTLVVSADQPGAVELTRRVRDLSDLKVVTYG 245

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   + + KV       +VT+ + GK   F   +PG    +NA+ A    +A+GI + 
Sbjct: 246 CAEDADVRVHKVTPRGLTSEVTVLLNGKFLTFTVSVPGAHYAHNAVAALAAGVALGIPAH 305

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFG 389
            +   L     V  R +  G  + G ++   YAH    +   L+ +R   +  RI+VVF 
Sbjct: 306 NLASALGSYTGVKRRLQLKG-EAAGVQVIDSYAHHPTEMTADLEAMRGAAADARILVVFQ 364

Query: 390 CG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
                R Q     MG+ AL LAD ++V D  P  EDP
Sbjct: 365 PHLFSRTQELGTEMGQ-ALALADASVVLDIYPAREDP 400


>gi|167856479|ref|ZP_02479196.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
 gi|167852402|gb|EDS23699.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
          Length = 475

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 127/338 (37%), Gaps = 55/338 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  +V SSA +  +          I V+   +    +   R       + +A+ GT G
Sbjct: 76  EGASVVVASSAINESNPEVAAAKEARIPVIQRAQMLAEIMRFR-------HGIAIAGTHG 128

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQG 181
           K++  + +  I   +GL    +     +   A  N     S   +A+A     S+L  Q 
Sbjct: 129 KTTTTAMISMIYTEAGLDPTFV--NGGLVKSAGKNAHLGASRYLIAEADESDASFLHLQP 186

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  V                        TN+  DH+D +             F   LP  
Sbjct: 187 MVSV-----------------------VTNIEPDHMDTYGGDFEKMKETYVRFLRNLPFY 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-------TIS 294
             A++ ADD   + VM+ A   G +V+S G+  K  +      I + QQ         + 
Sbjct: 224 GLAVMCADD---ETVMEIAPKVGRQVISYGFSEKADY-----RIEDYQQTGFQGHYTVVC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             G+  + L  +PG     NA  A  +    GI +  +L  L        RF+ +G+  R
Sbjct: 276 PTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSFIR 335

Query: 355 -GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             G++ +  DY H    +++ +K  R    + R+++VF
Sbjct: 336 PNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVF 373


>gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
 gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
          Length = 833

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 84/192 (43%), Gaps = 19/192 (9%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLS 103
           ++ AI G   +GH F+ +  A+G    V+      ++  A ++  N  IL V +    L 
Sbjct: 42  LYFAINGEHHNGHEFVAELYARGVRNFVIE-----ENLPAHVKLPNANILKVTSAVNALQ 96

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+    ++   ++ VTG++GK+ V  ++ ++        F++      S  + +++  
Sbjct: 97  QVAAAHRNQYQIPVIGVTGSNGKTMVKEWLAKLLAED----FKV----VKSPKSYNSQTG 148

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P  ++    ++   + G+    + A +      ++  I+   G FTNLG  H +    +
Sbjct: 149 VPLSVW---QMNKRHTMGIFEAGISAKNEMTALQKV--IQPSIGIFTNLGTAHDEGFDNR 203

Query: 224 QAYFNAKMRLFE 235
              F  K +LFE
Sbjct: 204 TQKFAEKWKLFE 215


>gi|309388991|gb|ADO76871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium
           praevalens DSM 2228]
          Length = 449

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           + N   DH+D HQT++ Y  AK  +F+   P +  AII  DD Y  E+  +      +VL
Sbjct: 183 YLNYSPDHLDRHQTEKNYQAAKANIFKNQQPSDF-AIIDLDDPYLSELKNKLE---AKVL 238

Query: 269 SVGYQGK 275
           ++  + +
Sbjct: 239 TISAKNE 245


>gi|309806287|ref|ZP_07700300.1| bifunctional protein FolC [Lactobacillus iners LactinV 03V1-b]
 gi|308167271|gb|EFO69437.1| bifunctional protein FolC [Lactobacillus iners LactinV 03V1-b]
          Length = 295

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 17/130 (13%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           ++P R++ V    +   I VD AH   ++  ++  +R I+ GRI ++ G   D+D  K  
Sbjct: 157 IIPARYQIV---QKKPLIMVDGAHNIQAVHELISYVRKISQGRIYILLGMMKDKDIAK-- 211

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ- 459
            + K+      I       PR+     I  ++   I       N I+  R+A ++L  + 
Sbjct: 212 -VVKLFDPKEKITFTRISYPRAATKSDIEEDLNCHI-------NFIDDYRSAYDILKNKL 263

Query: 460 ---DVLVVAG 466
              D+LVV G
Sbjct: 264 TQDDILVVTG 273


>gi|240850894|ref|YP_002972294.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Bartonella grahamii
           as4aup]
 gi|240268017|gb|ACS51605.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Bartonella grahamii
           as4aup]
          Length = 464

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 46/262 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG-----PTSTISSFAQDNRLTTPSPIYLA 171
            +A+TGT+GKS+    +  + ++ G    Q+G        T+  F +         IY+ 
Sbjct: 123 FIAITGTNGKSTTTVLLAHLLEKMGY-DVQVGGNIGKAILTLKPFVKKR-------IYV- 173

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  +D      ++   G   NL  DHID H +   Y   K 
Sbjct: 174 ---------------IECSSFQID--LTPSLQPTIGLLLNLTPDHIDRHGSFACYVQTK- 215

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIH 286
                L+ + S A I  DDA  + + ++  + G ++ ++        G +    K+ A++
Sbjct: 216 ---RHLIAQASQAFISVDDAACRFLYQQLLHEGKKIGAISKDHFVENGFYADGTKLFAVY 272

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             Q+  ++    D   +  L G     NAL+A     A+ I    + +HL     +  R 
Sbjct: 273 QGQRHMLA----DLTSMTALRGRHNAQNALMALATLQALKITDPSMNKHLASYKGLDHRM 328

Query: 347 EFVGTNSRGGRIYVDYAHTSNS 368
           + V     G  ++++ +  +N+
Sbjct: 329 QQV--RKMGAVLFINDSKATNA 348


>gi|196034514|ref|ZP_03101923.1| FolC bifunctional protein [Bacillus cereus W]
 gi|195993056|gb|EDX57015.1| FolC bifunctional protein [Bacillus cereus W]
          Length = 433

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 25/190 (13%)

Query: 294 SVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH------LE 337
           S  G+ FDF  P          + G  QV NA +A    + +    + ++E       L+
Sbjct: 236 SENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQ 295

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
           + + V GRFE + +N     I +D AH    +E ++K + +      +IV+F   GD+  
Sbjct: 296 EAYWV-GRFEKLQSNPD---IIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQL 351

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++G++     +I   T    R+    ++ +          E  N  EAI T IEM+
Sbjct: 352 --HNMVGQLETIADEIIFTTFAFDRAISAGELASYAKKESKLVFE--NWKEAIDTKIEMI 407

Query: 457 NKQDVLVVAG 466
            + DV ++ G
Sbjct: 408 GENDVFIITG 417


>gi|161526009|ref|YP_001581021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349274|ref|YP_001944902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
 gi|160343438|gb|ABX16524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189333296|dbj|BAG42366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
          Length = 468

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 151/386 (39%), Gaps = 58/386 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR + AG +FVA+ G + D H F+          +    A +     A      P+
Sbjct: 29  VSTDSRTVGAGDLFVALKGERFDAHDFL--------ADVAARGAAAALVAQAPAGIALPM 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V   TR  L   A     +    ++AVTG++GK++V   +  I       +  +G  + 
Sbjct: 81  IVGGETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIF------AAAVGAHAR 134

Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +++    +N +  P  +    A   L+    G+ H      +  L +     + L+    
Sbjct: 135 LATAGNLNNDVGLPLTLLRLAAAHRLAVIELGMNH---RGETEILARLTAPTVALV---- 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A       +   L P +  A+  ADDAY+   + R    G R+L 
Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHAL-PPDGVAVFPADDAYAS--IWRVAATGNRILD 244

Query: 270 VGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFP---------LPGEFQVYNA 315
                         A+H+ +     QVT  + G +     P           GE    NA
Sbjct: 245 F-------------ALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEM 371
           L A    +A G+  + + + LE    V GR +       S  G   VD  + +N  S+  
Sbjct: 292 LAATAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRA 351

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG 397
            +  +    + R++V+   G   D+G
Sbjct: 352 AIDVLAAQPAPRVLVIGDMGEVGDEG 377


>gi|296133262|ref|YP_003640509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296031840|gb|ADG82608.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 473

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 48/338 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++KI  + S  + ++ G ++  + G    D ++ +  A+ +GA A+V+S       F+  
Sbjct: 22  QQKITGIMSRCKAVKPGQVYFDVKGGPGSDENILV--ALDKGAVALVISKHKKKLPFN-- 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              N  I V+   + + + +    Y +   NI  V G +G S   +  + I      S F
Sbjct: 78  ---NHKISVIAVPKVWDAFWDCVSYHRDQFNI-PVVGVTGTSGKTTTKEMIA-----SIF 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +      I    Q+  L +  P ++ + L+      V  + +    H   Q R+  IK +
Sbjct: 129 K-KKWGKILKTEQNLNLPSFVPGHIMR-LTAEHKAAVFEIGMNRRGHVAKQSRV--IKPM 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G+ H+    +++A    K  + E + PK    +I ADD           N+G 
Sbjct: 185 IGIITNIGQAHVGMLGSKEAVIEEKGSIIEGI-PKNGYLLINADD----------ENSGK 233

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTIS--------------VEGKDFDFLFPLPGEFQ 311
             LS  +QGK +       I NK                    + GK+     P+ G+  
Sbjct: 234 LDLS-SFQGKTLRF----GIKNKADYVAEDIATGLDFVSFKTVIYGKEEQIRVPISGKHN 288

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           VYNAL A      + I+   + + L        R + V
Sbjct: 289 VYNALAAIAASTLLNIEVKYIKQGLAGFRRPKLRLQLV 326


>gi|254387287|ref|ZP_05002546.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
 gi|194346091|gb|EDX27057.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
          Length = 465

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 12/179 (6%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKR-AHNAGCRVLSVG 271
           H +Y   ++ Y +     FE  + K  P    ++    A + E+  R A N G RV++ G
Sbjct: 192 HANYASMEEIYES-----FETFVAKVVPGGTLVVAHGQAGAAEIAARVAGNEGLRVVTYG 246

Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +    + + K+       +VT+ ++G+   F   +PG    +NA+ A    +A+GI + 
Sbjct: 247 EEEAADVRITKITPRGLTSEVTVVIDGRMLTFTVSVPGRHYAHNAVAALAAGVALGIPAH 306

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVF 388
            +   L K   V  R +  G  + G ++   YAH    +   L+ IR      RI+VVF
Sbjct: 307 NLASALGKYTGVKRRLQLKG-EAAGVQVIDSYAHHPTEMSADLEAIRGAAGDSRILVVF 364


>gi|322513884|ref|ZP_08066963.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
 gi|322120283|gb|EFX92230.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
          Length = 475

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 19/190 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D +        A    F    P    A++ ADD   + VM+ A   G +V++
Sbjct: 192 TNIEPDHMDTYGGDFEQMKATYVKFLSNSPFYGLAVMCADD---ETVMEIAPQVGRQVVT 248

Query: 270 VGYQGKFIHLKKVCAIHNKQQV-------TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G+  K  +      I + QQ         +   G+  D L  +PG+    NA  A  + 
Sbjct: 249 YGFSDKADY-----RIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNALNATAALAVA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV--DYAHTSNSLEMILKNIRT- 378
              GI +  +L  L        RF+ +G+  R  G++ +  DY H    +++ +K  R+ 
Sbjct: 304 KEEGIGNEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARSG 363

Query: 379 ITSGRIIVVF 388
               R++++F
Sbjct: 364 WEDKRVVMIF 373


>gi|256832304|ref|YP_003161031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685835|gb|ACV08728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
          Length = 502

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 27/162 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   LAVTGT+GK++    +  I    GL    +G                      A  
Sbjct: 117 PAPWLAVTGTNGKTTTVELLATILHADGLRVATVGNVG-------------------APV 157

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  + +  +    +E SS  L  H    ++ +A +  N+  DH+D+H +   Y + K R+
Sbjct: 158 IRQIQNPTIDVFVLELSSFQL--HFTYSMEPLASAILNIAEDHVDWHGSFDQYASDKARI 215

Query: 234 FEELLPKESPAIIYA--DDAYSKEVMKRAHNAGCRVLSVGYQ 273
           F         A +Y+  DD   + + +   + G R +SV  +
Sbjct: 216 FTHT----HRACVYSEGDDRVVRLLHEADVHPGARAISVSAE 253


>gi|240168221|ref|ZP_04746880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           kansasii ATCC 12478]
          Length = 524

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 127/337 (37%), Gaps = 59/337 (17%)

Query: 20  IFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ-----------G 67
           I P    +R++   V  DSR I  G +F+A+ G   DGH +   A A            G
Sbjct: 20  ISPQDAAQRRVTGTVEFDSRAIGPGGLFLALPGAHVDGHDYAASAAAAGAVAVLAARPVG 79

Query: 68  AEAIVVSSAYSL----------QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
             AIVV+   SL           D   +  +    L          L A  L       I
Sbjct: 80  VPAIVVTPERSLAEGALAGVLEHDADGSGAAVLAALAKLAKAVAAELVAGGL------TI 133

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA-KALSY 176
           + +TG+SGK+S    V  + Q  G+     G      SF  +N L  P  +  A +   Y
Sbjct: 134 IGITGSSGKTSTKDLVAAVLQPLGVVVAPPG------SF--NNELGHPWTVLRAGRDTDY 185

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIA-GSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           L    +  +S   + H  +   L  I   A G   N+G  H+    +++A    K  L  
Sbjct: 186 L----ILEMS---ARHPGNIAALAQIATPAIGVVLNVGTAHLGEFGSREAIARTKSEL-P 237

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKF----IHLKKVCAIHNKQ 289
           + +P+    I+ ADD     V   A     RV+ V  G  G      + L ++     + 
Sbjct: 238 QAVPQSGVVILNADD---PAVAAMAEVTAARVVRVSRGSTGDVWAGPVSLDELA----RP 290

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           Q T+       +    + G+ QV NAL AA + +  G
Sbjct: 291 QFTVHAGATQAEVRLGVYGDHQVSNALCAAAVALECG 327


>gi|71066594|ref|YP_265321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychrobacter
           arcticus 273-4]
 gi|118595676|sp|Q4FQ21|MURD_PSYA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71039579|gb|AAZ19887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychrobacter
           arcticus 273-4]
          Length = 476

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 21/119 (17%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+A+TG++ KS+V + V Q+   +G++   +G    I                   ALS 
Sbjct: 117 IVAITGSNAKSTVTTLVGQMAADAGIN---VGVGGNIG----------------VPALSL 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           LS+  +    +E SS  L+     G ++   +  N+  DH+D H     Y  AK R+F+
Sbjct: 158 LSNDKMELAVIELSSFQLETVTNLGAQV--ATVLNMSPDHLDRHGDMLGYHQAKHRIFQ 214


>gi|15901367|ref|NP_345971.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           TIGR4]
 gi|111658364|ref|ZP_01409051.1| hypothetical protein SpneT_02000443 [Streptococcus pneumoniae
           TIGR4]
 gi|225859278|ref|YP_002740788.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           70585]
 gi|25008813|sp|Q97PS8|MURC_STRPN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766024|sp|C1C8B2|MURC_STRP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|14973011|gb|AAK75611.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           TIGR4]
 gi|225720652|gb|ACO16506.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           70585]
          Length = 444

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAGCRVL 268
           TN+  DH DY  + +  FNA    F +   + +  + +Y +DA   E+ K   +A     
Sbjct: 171 TNIDFDHPDYFTSLEDVFNA----FNDYAKQITKGLFVYGEDA---ELRKITSDAPIYYY 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       +         T+   G++   F  P  G   + NA    GL    G 
Sbjct: 224 GFEAEGNDFVASDLLRSITGSTFTVHFRGQNLGQFHIPTFGRHNIMNATAVIGLLYTAGF 283

Query: 328 DSALVLEHLEKLHVVPGRF 346
           D  LV EHL+    V  RF
Sbjct: 284 DLNLVREHLKTFAGVKRRF 302


>gi|326405142|ref|YP_004285224.1| pyruvate carboxylase [Acidiphilium multivorum AIU301]
 gi|325052004|dbj|BAJ82342.1| pyruvate carboxylase [Acidiphilium multivorum AIU301]
          Length = 1147

 Score = 36.6 bits (83), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGK 298
           +E+ A    D+ Y +++++RA +   ++L   + G  +HL ++ C I  + Q  I  E  
Sbjct: 189 REALAAFGNDEVYFEKLVRRARHVEVQILGDSH-GNLVHLFERDCTIQRRHQKVI--ERA 245

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGID--SALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              +L     +      L AA L I    D  +A  +E L  L    GRF F+  N    
Sbjct: 246 PAPYL-----DAATREGLCAAALAIGRATDYRNAGTVEFL--LDRETGRFYFIEVNP--- 295

Query: 357 RIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           RI V++  T     L+++   IR    GRI       G  D+   P    I LD   +  
Sbjct: 296 RIQVEHTVTEVVTGLDIVKAQIRIAEGGRI-------GRPDETGIPAQEAIVLDGHALQC 348

Query: 415 -VTDDNPRSE-DPEKIRAEIIHGIPGF 439
            +T +NP +   P+  R     G  GF
Sbjct: 349 RITTENPENNFIPDYGRISAYRGAFGF 375


>gi|300864111|ref|ZP_07109007.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
 gi|300337877|emb|CBN54153.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
          Length = 906

 Score = 36.6 bits (83), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR       +      VDYAH ++S E +   +R      I VV G G  RD+     +
Sbjct: 729 PGRMNLFNLGTY--HALVDYAHNAHSYEALGSFVRNWPGFHIGVVGGPGDRRDE-DFITL 785

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           GK++  + D  IV +D  R   P    AE+I
Sbjct: 786 GKLSAKIFDRIIVKEDADRRGRPAGSAAELI 816


>gi|158421725|ref|YP_001523017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Azorhizobium
           caulinodans ORS 571]
 gi|158328614|dbj|BAF86099.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase precursor
           [Azorhizobium caulinodans ORS 571]
          Length = 536

 Score = 36.6 bits (83), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 26/154 (16%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GKS+  + +  + +  G    Q+G                     +  A+  L 
Sbjct: 189 AITGTNGKSTTTALLSHLMKVGG-RDVQMGGN-------------------IGTAILSLE 228

Query: 179 S--QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  HV VE SS+ +D     G+    G   NL  DHID H T + Y   K RL   
Sbjct: 229 PFKAGRVHV-VECSSYQIDL--APGLDPSVGIHLNLTPDHIDRHGTFEHYGAVKERLIAG 285

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           + P  + A++  DDA S  +  RA  AG  V+ +
Sbjct: 286 VQPGGT-AVVGVDDAPSAAIADRAEAAGIHVVRI 318


>gi|62900690|sp|Q83GN2|MURD_TROWT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 480

 Score = 36.6 bits (83), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 21/118 (17%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GK++ A     +  + G      G   T              P+  A      + 
Sbjct: 125 ITGTNGKTTTALLTGSMLAKDGARVAVCGNIGT--------------PVLDA----VRNP 166

Query: 180 QGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +G  ++ VE SS  L     H    +K  + +  NL  DH+++H  ++ Y+ AK R++
Sbjct: 167 KGFDYLVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYYCAKSRVY 224


>gi|171316203|ref|ZP_02905426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
 gi|171098617|gb|EDT43414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
          Length = 468

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FVA+ G++ D H F+      G  A   ++A  +    A +    P+
Sbjct: 29  VSTDSRTVGPGDLFVALKGDRFDAHDFL------GDVAARGAAAALVAHVPAGL--AMPV 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +    TR  L   A     +    ++AVTG++GK++V   +  I                
Sbjct: 81  VEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASIFA-------------- 126

Query: 153 ISSFAQDNRLTTPSPIY--LAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIAGS 208
            ++   D RL T   +   +   L+ L   G   V+V     +H  +   L   +L A +
Sbjct: 127 -AAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEIL--ARLAAPT 183

Query: 209 FT---NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                N  R+H ++  T +A       +   L P +  A+  ADDAY+
Sbjct: 184 VALVNNAQREHQEFMATVEAVALEHAAVIHALTP-DGVAVFPADDAYA 230


>gi|148261652|ref|YP_001235779.1| pyruvate carboxylase [Acidiphilium cryptum JF-5]
 gi|146403333|gb|ABQ31860.1| pyruvate carboxylase [Acidiphilium cryptum JF-5]
          Length = 1164

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGK 298
           +E+ A    D+ Y +++++RA +   ++L   + G  +HL ++ C I  + Q  I  E  
Sbjct: 206 REALAAFGNDEVYFEKLVRRARHVEVQILGDSH-GNLVHLFERDCTIQRRHQKVI--ERA 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGID--SALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              +L     +      L AA L I    D  +A  +E L  L    GRF F+  N    
Sbjct: 263 PAPYL-----DAATREGLCAAALAIGRATDYRNAGTVEFL--LDRETGRFYFIEVNP--- 312

Query: 357 RIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           RI V++  T     L+++   IR    GRI       G  D+   P    I LD   +  
Sbjct: 313 RIQVEHTVTEVVTGLDIVKAQIRIAEGGRI-------GRPDETGIPAQEAIVLDGHALQC 365

Query: 415 -VTDDNPRSE-DPEKIRAEIIHGIPGF 439
            +T +NP +   P+  R     G  GF
Sbjct: 366 RITTENPENNFIPDYGRISAYRGAFGF 392


>gi|172059545|ref|YP_001807197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992062|gb|ACB62981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
          Length = 468

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 33/229 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR +  G +FVA+ G++ D H F+      G  A   ++A  +    A +    P+
Sbjct: 29  VSTDSRTVGPGDLFVALKGDRFDAHDFL------GDVAARGAAAALVAHVPAGL--AMPV 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +    TR  L   A     +    ++AVTG++GK++V   +  I                
Sbjct: 81  VEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASIFA-------------- 126

Query: 153 ISSFAQDNRLTTPSPIY--LAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIAGS 208
            ++   D RL T   +   +   L+ L   G   V+V     +H  +   L   +L A +
Sbjct: 127 -AAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEIL--ARLAAPT 183

Query: 209 FT---NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                N  R+H ++  T +A       +   L P +  A+  ADDAY+ 
Sbjct: 184 VALVNNAQREHQEFMATVEAVALEHAAVIHALTP-DGVAVFPADDAYAS 231


>gi|260773493|ref|ZP_05882409.1| UDP-N-acetylmuramate--alanine ligase [Vibrio metschnikovii CIP
           69.14]
 gi|260612632|gb|EEX37835.1| UDP-N-acetylmuramate--alanine ligase [Vibrio metschnikovii CIP
           69.14]
          Length = 487

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 112/293 (38%), Gaps = 62/293 (21%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173
           +AV GT GK++  + V QI   +GL  +F  G    + S   + RL + S I +A+A   
Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181

Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S+L  Q +  +     +  +D +         G F  L +  +D              
Sbjct: 182 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFETLKQTFVD-------------- 219

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR----------AHNAGCRVLSV---GYQGKFIHL 279
            F   LP    A++  DD   +E++ R          + +A  R+      G QG F  L
Sbjct: 220 -FLHNLPFYGQAVLCIDDPVVRELIPRISRHVITYGFSEDADVRIADYHQQGQQGHFTVL 278

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +  D      +PG     NA  A  +     ID   +L  +   
Sbjct: 279 RQ--------------DKADLAITLNIPGRHNALNAAAAIAVASEDDIDDDAILRAMAST 324

Query: 340 HVVPGRFEFVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                RF+ +G  + G G + +  DY H    +++ +K  R   T  R++++F
Sbjct: 325 QGTGRRFDHLGEFATGNGHVMLVDDYGHHPTEVDVTIKAARNGWTEKRLVMIF 377


>gi|163854031|ref|YP_001642074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium extorquens PA1]
 gi|163665636|gb|ABY33003.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens PA1]
          Length = 455

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 27/143 (18%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  +    + + +G    Q+G                     +  A+  L
Sbjct: 117 VAITGTNGKSTTTALTAHLLRHAG-RDVQMGGN-------------------IGTAILSL 156

Query: 178 SSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                T V V E SS  +D      +K   G   NL  DH+D H T + Y   K    E 
Sbjct: 157 EPPAATRVHVVELSSFQIDL--TPSLKPGVGILLNLTPDHLDRHGTMENYAVIK----ER 210

Query: 237 LLPKESPAIIYADDAYSKEVMKR 259
           L+     A+I  DD Y   + +R
Sbjct: 211 LVAGADLAVIGVDDPYCAAIAER 233


>gi|300858816|ref|YP_003783799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686270|gb|ADK29192.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206521|gb|ADL10863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium pseudotuberculosis C231]
 gi|308276763|gb|ADO26662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium pseudotuberculosis I19]
          Length = 461

 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 60/311 (19%)

Query: 79  LQDFSATIRS-----NTPILV---------VDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           LQDFS  I S     +TP+LV         + +      L  + + GK P   L VTGT+
Sbjct: 64  LQDFSCVITSPGWSPDTPLLVQAKDLGIEVLGDVELAYRLDRAEVCGK-PRQWLVVTGTN 122

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + ++ + +R+G  +  +G                   + +A+AL+  + + +  
Sbjct: 123 GKTTTTAMLEAMIKRAGFKAQAVGNIG----------------VPVAEALN--APERIDV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              E SS  L  H  + +    G   NL  DHID+H +  +Y  AK ++ +  +     A
Sbjct: 165 FVAELSSFQL--HWSEQLVPDVGILLNLADDHIDWHGSFDSYAAAKAKVLQAPI-----A 217

Query: 245 IIYADDAYSKEVMKRAHN--------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           I   D+ +  +++             A  R   +G + K I     CA  +  ++ +S E
Sbjct: 218 IAGVDNEHVAQILSTTKTQKLVEFTAAEPRAGQLGIRNKMI---VDCAFADSLEI-VSAE 273

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G          G   VY+AL AA    A+G+ +  +   L   HV   R + VG N+R G
Sbjct: 274 G------IEPAGPAGVYDALAAAAAARAMGVCADTIAAALADFHVAGHRGQIVG-NAR-G 325

Query: 357 RIYVDYAHTSN 367
            + +D +  +N
Sbjct: 326 IVAIDNSKATN 336


>gi|290969170|ref|ZP_06560695.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780676|gb|EFD93279.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 454

 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + LA+A++ L  Q V     E SS  L+      +  +     N+  DH+D H T +AY 
Sbjct: 148 VGLAQAVTDLPPQAVA--VAELSSFQLEL--TSSLHAVGAVILNITPDHLDRHHTMEAYS 203

Query: 228 NAKMRLFEELLPKESPAIIYADD 250
            AK R+F      ++  + Y DD
Sbjct: 204 AAKERIFSNQEATDTAVLNYDDD 226


>gi|118594410|ref|ZP_01551757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
 gi|118440188|gb|EAV46815.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
          Length = 481

 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 25/168 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   S  +  A  +      VV++   FL       +      I+ VTGT+GK++ 
Sbjct: 88  CIVLSPGISFSEIKAIAQGKD---VVNDIFLFLKFIEKNNHRVKNLKIIGVTGTNGKTTT 144

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F++ + +  G++    G                 SP+ L   L Y+    +   S + 
Sbjct: 145 CFFLEHLYKSLGVNVRVAGNIGL-------------SPLELIDDLDYIEIIILEISSFQL 191

Query: 190 S---SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               S GL       +KL  G   NL  DH+D H+  + Y+  K  L 
Sbjct: 192 LPFISKGLP------VKLDVGILLNLSPDHLDIHKNMEEYYQTKAELL 233


>gi|332669998|ref|YP_004453006.1| FolC bifunctional protein [Cellulomonas fimi ATCC 484]
 gi|332339036|gb|AEE45619.1| FolC bifunctional protein [Cellulomonas fimi ATCC 484]
          Length = 463

 Score = 36.6 bits (83), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 16/197 (8%)

Query: 240 KESPAIIYA--DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           KE   ++ A  D+     V+  A   G RV+  G     +  ++  A+  +      + G
Sbjct: 216 KEGATLVLAQQDEVVEGVVLAAAAEKGARVVREGVDIDVV--ERQVAVGGQLLTLRGLGG 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCI-----AIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              D   PL GEFQ +NAL+A             +D  +V      +   PGR E V ++
Sbjct: 274 VYADVFLPLHGEFQAHNALLALVAAEAFLTGGAALDGDVVGTAFADVS-SPGRLEVVRSS 332

Query: 353 SRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                + VD AH    +E ++  +       R++ V G   D+D     I+  +   LA+
Sbjct: 333 P---TVLVDGAHNPAGVEALVAALDEAFAFQRVVGVVGVMADKD--PEGILALLEPVLAE 387

Query: 412 IAIVTDDNPRSEDPEKI 428
           + +    NPR+ DP+ +
Sbjct: 388 VVVTRASNPRALDPQDL 404


>gi|293370650|ref|ZP_06617202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
 gi|292634384|gb|EFF52921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
          Length = 431

 Score = 36.6 bits (83), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 72/366 (19%), Positives = 152/366 (41%), Gaps = 41/366 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G +F+A+ G   +G+ F   A+  G A AI+  + Y+       +  +  
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYA-------VEGDKR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G   
Sbjct: 69  YILVDNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P+ +   K         +  + + A+  G  +   +  +   G  TN
Sbjct: 128 -------NNHIGVPTTLLRLK-----PEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  K++   I+ D+AY   + +     G  ++S G
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNAYLMNIAQ-----GLNLISYG 230

Query: 272 YQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +      G+        A   K       +G+       L GE+   NAL A  +    
Sbjct: 231 TEDDLYVNGQITDNSPYLAFEWKA----GKDGERHQVRTQLIGEYNFPNALAAITIGRFF 286

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGR 383
           G+++  + E L        R +   T      + +D A+ +N   M+  L+N R +T   
Sbjct: 287 GVEAKKIDEALASYTPQNNRSQLKKTEDN--TLIID-AYNANPTSMMAALQNFRNMTVPH 343

Query: 384 IIVVFG 389
            +++ G
Sbjct: 344 KMLILG 349


>gi|160885477|ref|ZP_02066480.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|260172201|ref|ZP_05758613.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. D2]
 gi|315920509|ref|ZP_07916749.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109099|gb|EDO10844.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|313694384|gb|EFS31219.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 431

 Score = 36.6 bits (83), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 72/366 (19%), Positives = 152/366 (41%), Gaps = 41/366 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91
           V++DSR+   G +F+A+ G   +G+ F   A+  G A AI+  + Y+       +  +  
Sbjct: 16  VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYA-------VEGDKR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G   
Sbjct: 69  YILVDNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNL- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +N +  P+ +   K         +  + + A+  G  +   +  +   G  TN
Sbjct: 128 -------NNHIGVPTTLLRLK-----PEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  K++   I+ D+AY   + +     G  ++S G
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNAYLMNIAQ-----GLNLISYG 230

Query: 272 YQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +      G+        A   K       +G+       L GE+   NAL A  +    
Sbjct: 231 TEDDLYVNGQITDNSPYLAFEWKA----GKDGERHQVRTQLIGEYNFPNALAAITIGRFF 286

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGR 383
           G+++  + E L        R +   T      + +D A+ +N   M+  L+N R +T   
Sbjct: 287 GVEAKKIDEALASYTPQNNRSQLKKTEDN--TLIID-AYNANPTSMMAALQNFRNMTVPH 343

Query: 384 IIVVFG 389
            +++ G
Sbjct: 344 KMLILG 349


>gi|75759955|ref|ZP_00740024.1| Folylpolyglutamate synthase / Dihydrofolate synthase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74492552|gb|EAO55699.1| Folylpolyglutamate synthase  / Dihydrofolate synthase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 442

 Score = 36.6 bits (83), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 27/203 (13%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDS 329
           K   A+H + +     +G+ FDF  P          + G  QV NA +A    + +    
Sbjct: 235 KHFTALHKQSKE----DGEQFDFTCPFAAFEDLQISMKGIHQVGNAALALMAVMYVKTYL 290

Query: 330 ALVLEHLE-----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGR 383
           + ++E  E     +     GRFE + +N     I +D AH    +E ++K +        
Sbjct: 291 SFLIEEEEIRTGLREAYWIGRFEKLQSNPD---IIIDGAHNPEGIESLVKTVEAHYKDKN 347

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +IV+F   GD+      ++G++     +I   T    R+   +K+ +          E  
Sbjct: 348 VIVLFTALGDKQL--HNMVGQLETIADEIIFTTFAFDRAISADKLASYSQKESKLVFE-- 403

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           N  EAI T +EM+ + DV ++ G
Sbjct: 404 NWKEAIDTKVEMIGENDVFIITG 426


>gi|307328984|ref|ZP_07608152.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
 gi|306885346|gb|EFN16364.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
          Length = 474

 Score = 36.6 bits (83), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 92/221 (41%), Gaps = 17/221 (7%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQ 273
           H +Y    + Y  A    F   +      +I AD + ++E+  R        RVL+ G  
Sbjct: 193 HANYASMDEIY--ASFETFVGRIRSGGALVISADQSGARELTARVSGGEEPPRVLTYGED 250

Query: 274 GKFIHLKKVCAIHN---KQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                  +V AI       +VT+    S+ G +  F   +PG     NA+ A     A+G
Sbjct: 251 ESAD--VRVLAIEPHGLTSEVTVRLAESLGGAEITFTVSVPGRHYALNAVAALTAGAALG 308

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRII 385
           + +  +   L     V  R +  GT + G ++   YAH    +   L+ IR     GR++
Sbjct: 309 VPAGELAPALASYTGVKRRLQLKGTAA-GVQVIDSYAHHPTEIAADLEAIRGGAGEGRVL 367

Query: 386 VVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           VVF      R Q     MG+ AL LAD ++V D  P  EDP
Sbjct: 368 VVFQPHLFSRTQELGTEMGE-ALALADASVVLDIYPAREDP 407


>gi|317012551|gb|ADU83159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori Lithuania75]
          Length = 493

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 142/336 (42%), Gaps = 68/336 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKAL 174
           ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D    L   S IY+A+A 
Sbjct: 170 VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIAEAG 229

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   ++G     ++  +  ++ H +            +G  H++Y +T +     K  L 
Sbjct: 230 A--RNKG----DIKEITRLIEPHLV--------VVAEVGEQHLEYFKTLENICETKAELL 275

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVT 292
           +                      KR   A C  +     Y  K   L  V ++    Q T
Sbjct: 276 DS---------------------KRLEKAFCYSVEKIKPYAPKDSPLIDVSSLVKNIQST 314

Query: 293 ISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHV 341
           +  +G  F+ L           + GEF  YN  +A+ + IA  +G+++  +   + +L+ 
Sbjct: 315 L--KGTSFEMLLDSVWESFETKVLGEFSAYN--IASAILIAKHLGLETERIRRLVLELNP 370

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGR-IIVVFGCGGDRDQGK 398
           +  R + +  N    +I +D +   N L+ +L+ IR  ++  GR +IV  G      +  
Sbjct: 371 IAHRLQLLEVNQ---KIIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESN 426

Query: 399 RPIMGKIALDLADIAIVTDD-NPRS-----EDPEKI 428
             +  KI   + D+AI+T + N ++     + P+KI
Sbjct: 427 EALAQKID-GVFDVAIITGELNSKTIASKLKTPQKI 461


>gi|309783019|ref|ZP_07677738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ralstonia sp.
           5_7_47FAA]
 gi|308918127|gb|EFP63805.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ralstonia sp.
           5_7_47FAA]
          Length = 499

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 31/209 (14%)

Query: 166 SPIYLAKALSYLSSQGVTHVSV-EASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           SP  L K    + +  +  V V E SS  L+  H LD     A +  N+ +DH+D+H T 
Sbjct: 158 SPSALDKLSECVDADTLPDVWVLELSSFQLETTHTLDAD---AATVLNITQDHLDWHGTL 214

Query: 224 QAYFNAKMRLFEE-----LLPKESPAIIYA-----------DDAYSKEVMKRAHNAGCR- 266
           +AY  AK R+F       L  +++  + +A           D+  + + +    + G   
Sbjct: 215 EAYAAAKGRIFGANTVRVLNRQDAGVMAFASKNGGDITFGIDEPGTPDALGLLRDGGMPW 274

Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-----LPGEFQVYNALVAAG 320
            VL+   Q +     +     N    T+ V  K    L P     + G     NA+ A  
Sbjct: 275 IVLAEAEQDELPKPTRRKKGDNAPAATVPVRLKR---LMPADALRIRGLHNATNAMAALA 331

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           LC AIG+  + +L  L      P R E +
Sbjct: 332 LCRAIGLPVSALLHGLRDYAGEPHRVELI 360


>gi|297156474|gb|ADI06186.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 476

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 16/220 (7%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVGYQ- 273
           H +Y   ++   +   + F E +      ++ AD   ++E+  R     G RVL+ G   
Sbjct: 193 HANYASMEE--IHESFQTFVERIRPGGTLVVSADHPGARELTGRVTGREGLRVLTYGEDP 250

Query: 274 GKFIHLKKVCAIHNKQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G  + +  +       +VT+    ++ G +  F   +PG     NA+ A     A+G+ +
Sbjct: 251 GADVRVLDIAQRGLTSEVTVLLPDALGGGELTFTVSVPGRHYALNAVAALTAGAALGVPA 310

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             +   L     V  R +  G  + G ++   YAH    +   L+ IR     GR++VVF
Sbjct: 311 RELAPALGSYTGVRRRLQLKGVAA-GVQVIDSYAHHPTEISADLEAIRGGAGDGRVLVVF 369

Query: 389 GC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
                   R+ G    MG+ AL LAD ++V D  P  EDP
Sbjct: 370 QPHLFSRTRELGVE--MGQ-ALALADASVVLDIYPAREDP 406


>gi|270295451|ref|ZP_06201652.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
 gi|270274698|gb|EFA20559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
          Length = 444

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 114/281 (40%), Gaps = 35/281 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  S +  I + +GL+   +G    I +               + AL  
Sbjct: 104 MVCITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGN---------------SLALQV 145

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
            + Q   +V +E SS  LD   +   +       N+  DH+D Y    Q Y +AK R+ +
Sbjct: 146 ATEQHDYYV-IELSSFQLDN--MYNFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQ 202

Query: 236 ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                E   I + DD    +E+ K    A     +   +   I   +   +   + +  +
Sbjct: 203 N-QTSEDAFIFWNDDPIIKRELDKHGLRAHLYPFAAVKEDGAIAYVEDGEVEINEPIAFN 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E ++      L G   +YN+L A       GI    + + L     V  R E V T  R
Sbjct: 262 MEQEE----LALHGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVEHRLEKVAT-VR 316

Query: 355 GGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDR 394
           G     D   T+ NS    L+++    +G+ +++ G G D+
Sbjct: 317 GVSFINDSKATNVNSCWYALQSM----TGKTVLILG-GKDK 352


>gi|240950384|ref|ZP_04754647.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
 gi|240295098|gb|EER45930.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
          Length = 475

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 132/340 (38%), Gaps = 59/340 (17%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA  +V SSA   S  + +A   +  P++      +   + A  +  +H    +A+ GT
Sbjct: 76  EGASVVVASSAIDESNPEVAAAKEARIPVI------QRAQMLAEIMRFRHG---IAIAGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179
            GK++  + +  I   +GL    +     +   A  N     S   +A+A     S+L  
Sbjct: 127 HGKTTTTAMISMIYTEAGLDPTFV--NGGLVKSAGKNAHLGASRYLIAEADESDASFLHL 184

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q +  V                        TN+  DH+D +             F   LP
Sbjct: 185 QPMVSV-----------------------VTNIEPDHMDTYGGDFEKMKETYVRFLRNLP 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-------T 292
               A++ ADD   + VM+ A   G +V+S G+  K  +      I + QQ         
Sbjct: 222 FYGLAVMCADD---ETVMEIAPKVGRQVISYGFSEKADY-----RIEDYQQTGFQGHYTV 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +   G+  + L  +PG     NA  A  +    GI +  +L  L        RF+ +G+ 
Sbjct: 274 VCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 353 SR-GGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            R  G++ +  DY H    +++ +K  R    + R+++VF
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVF 373


>gi|157147485|ref|YP_001454804.1| UDP-N-acetylmuramate--L-alanine ligase [Citrobacter koseri ATCC
           BAA-895]
 gi|166222972|sp|A8ALK5|MURC_CITK8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157084690|gb|ABV14368.1| hypothetical protein CKO_03284 [Citrobacter koseri ATCC BAA-895]
          Length = 491

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 102/281 (36%), Gaps = 56/281 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  + V  I   +GL      PT                   L KA    
Sbjct: 122 IAIAGTHGKTTTTAMVSSIYAEAGLD-----PTFVNGG--------------LVKAAGVH 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G +   + A +   D   L    ++A   TN+  DH+D +Q            F   
Sbjct: 163 ARLGHSRYLI-AEADESDASFLHLQPMVA-IVTNIEADHMDTYQGDFENLKQTFINFLHN 220

Query: 238 LPKESPAIIYADDAYSKEVMKR----------AHNAGCRV---LSVGYQGKFIHLKKVCA 284
           LP    A++  DD   +E++ R          + +A  RV     VG QG F  L++   
Sbjct: 221 LPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSDDADVRVEEYQQVGPQGHFTLLRQDKP 280

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                QVT++            PG     NA  A  +    GID   +L  LE       
Sbjct: 281 ---AMQVTLNA-----------PGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGR 326

Query: 345 RFEFVG------TNSRGGRIYV--DYAHTSNSLEMILKNIR 377
           RF+F+G       N + G   +  DY H    ++  +K  R
Sbjct: 327 RFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAAR 367


>gi|319425223|gb|ADV53297.1| UDP-N-acetylmuramate [Shewanella putrefaciens 200]
          Length = 464

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           + L G+  + NA++A      +G+  +  +E L +      R E +GT   G  +Y D+A
Sbjct: 279 WDLIGQHNIENAIMAIAAARHVGVKPSAAIEALAQFIPPKRRLELLGT-VNGISVYDDFA 337

Query: 364 HTSNSLEMILKNIRT-ITSGRIIVVF 388
           H   ++   LK +R  +   +IIVV 
Sbjct: 338 HHPTAIATTLKGMRAKVGQSKIIVVL 363


Searching..................................................done


Results from round 2




>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/497 (100%), Positives = 497/497 (100%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI
Sbjct: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV
Sbjct: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ
Sbjct: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK
Sbjct: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF
Sbjct: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV
Sbjct: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP
Sbjct: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK
Sbjct: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480

Query: 481 KMSVDCDIIREILGLIL 497
           KMSVDCDIIREILGLIL
Sbjct: 481 KMSVDCDIIREILGLIL 497


>gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 500

 Score =  568 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 380/496 (76%), Positives = 439/496 (88%), Gaps = 3/496 (0%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQDLIYKDFPELINQLS FP+Q RER+I+++SSDSRHIQ GW+FVAIVGN+EDGH FI
Sbjct: 1   MKLQDLIYKDFPELINQLSRFPIQLRERRIHDISSDSRHIQVGWMFVAIVGNQEDGHFFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA+AQGA  IVVSS +  QDFS  ++++ PILVVDNTR+FLSL A+RLYGKHPE I AV
Sbjct: 61  PQAVAQGAGVIVVSSMHQSQDFSHVVKADIPILVVDNTRRFLSLVAARLYGKHPEKIFAV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASFVQQI Q +GLSSFQIGP S + S  + DNRLTTPSP+Y+A+AL+YL+S
Sbjct: 121 TGTSGKTSVASFVQQISQHAGLSSFQIGPISLMPSLQREDNRLTTPSPVYIAQALAYLAS 180

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG THVS+EASSHGLDQHRLDGIK IAGSFTN GRDHIDYH+TQQAYFNAKMRLFEELLP
Sbjct: 181 QGTTHVSIEASSHGLDQHRLDGIKFIAGSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLP 240

Query: 240 KESPA--IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           K SPA      DD++S +VM+RAHNAGCRVLSVGY+G FI LK +  I++KQQV+ISVEG
Sbjct: 241 KGSPAVICNNDDDSWSNKVMERAHNAGCRVLSVGYKGTFIRLKNLTQINDKQQVSISVEG 300

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           KDFDFLFPL G FQV NALV+AGLCIA GID  +V+E+LEK++V+PGRFEF+G NS+GGR
Sbjct: 301 KDFDFLFPLQGAFQVSNALVSAGLCIATGIDVPVVIEYLEKVNVIPGRFEFIGNNSKGGR 360

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           IYVDYAHT NSLEM+L+N+R ITSGRIIVVFGCGGDRD+GKR IMGKIAL+LAD++IVTD
Sbjct: 361 IYVDYAHTPNSLEMVLRNLRNITSGRIIVVFGCGGDRDRGKRKIMGKIALELADLSIVTD 420

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSE+P+ IRAEII+G PGFIE+GNR EAIR AI MLNK+DVLVVAGKGHETV I+ N
Sbjct: 421 DNPRSENPQAIRAEIINGFPGFIEEGNRQEAIRIAISMLNKEDVLVVAGKGHETVQIIHN 480

Query: 478 GEKKMSVDCDIIREIL 493
           G+ KMSVDCD+IREIL
Sbjct: 481 GKIKMSVDCDVIREIL 496


>gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
 gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
          Length = 483

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 229/489 (46%), Positives = 298/489 (60%), Gaps = 13/489 (2%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F E +             +I  +S+DSR +  G++FVA+ G K DG  +I  AI 
Sbjct: 2   LFGTVFTECLED-----QNLSSMEITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIK 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA AIV      L+D         PIL V N R  L+L A+R YG  PE ++AVTGTSG
Sbjct: 57  RGARAIVTDCHAVLEDLP------VPILRVSNVRHSLALAAARFYGSQPETVVAVTGTSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTH 184
           K+SV SF++QI    G  +  IG    +S         TTP P+ L + L  +S +GVTH
Sbjct: 111 KTSVVSFIRQIWTHVGFCAASIGTVGVVSPKQNVYGSLTTPDPVALHRLLCEISHEGVTH 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH   + Y  AKM+LF+ LLP  +PA
Sbjct: 171 AALEASSHGLDQGRLDGVRLTAGAFTNLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPA 230

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I+ADD YS++V+     A  RVL++G +G+FI + +V    +KQ +   VE   + F  
Sbjct: 231 LIFADDVYSQKVIDVVTQARRRVLTIGRKGQFITINRVEHQRSKQCIECRVENNIYTFDL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G+FQV NAL+AAGL IA G+    V   LE L   PGR EFVG       +Y+DYAH
Sbjct: 291 PLAGDFQVANALMAAGLAIATGVSPRKVFSALETLQGAPGRLEFVGKTENNAPVYIDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +LE +L ++R  T GR+IVVFGCGGDRDQGKRP+MGKIA D ADI IVTDDNPR+E 
Sbjct: 351 KPEALEQVLLSVRPFTQGRLIVVFGCGGDRDQGKRPLMGKIAADKADIVIVTDDNPRTEM 410

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           PEKIR +I+  +P  IE  +R EAI  A+E+L   D L++AGKGHE   I+         
Sbjct: 411 PEKIRKDILQAVPTAIEIADRGEAISYAVELLKAGDTLIIAGKGHEDGQII-GQTTYPFS 469

Query: 485 DCDIIREIL 493
           D     E L
Sbjct: 470 DRLKAIEAL 478


>gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CFN 42]
 gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CFN 42]
          Length = 506

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 236/494 (47%), Positives = 313/494 (63%), Gaps = 14/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR+++ G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRNVEPGNAFVAVTGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S                P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 78  ADAAGRGAAVAIASQPVDAA---------IPVLAVKEPRRFLSIAAARFYGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +    TTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + ++ A +AG  V +VG +G ++ LK+V    +KQ   I +  + 
Sbjct: 249 KGAPAVIFADDPWSPQAVQAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 308

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G++    +  LEKL    GR E VG    G   Y
Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKAAMAALEKLVGASGRLELVGHTKDGALAY 368

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E G+R  AIR A+ ML   D L+VAGKGHE    +  G 
Sbjct: 429 PRSEEPAAIRAEIMTAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHEEGQTI-GGV 487

Query: 480 KKMSVDCDIIREIL 493
                D   +R+ L
Sbjct: 488 TLPFSDHAEVRKAL 501


>gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
 gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
          Length = 486

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 236/495 (47%), Positives = 318/495 (64%), Gaps = 12/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++DL   +FPEL  QL        E  I  +++DSR ++ G +FVA+ G K +G  +I
Sbjct: 1   MKIRDLAGTNFPELSAQLQ---GNAAEIDIAGITADSRQVKPGDLFVAVAGTKANGSAYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA A++V+         +   +  P+  +   R+FL+  A+RL+G+ PE ++AV
Sbjct: 58  ADALSRGAAAVIVAEG-------SGADAGAPVFELSEPRRFLAQAAARLFGRQPETMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   SGL++  IG T  T         LTTP P+ L K L+ L+ 
Sbjct: 111 TGTAGKTSVASFTRQIWAHSGLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELAD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y  +KMRLF  LLP
Sbjct: 171 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S E +  A  AG  V +VG  G FI LK+V    +KQ   + V    
Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFISLKRVEHFRHKQSAEVHVGDDI 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ GI++ +    LEKL    GR E VG    G   Y
Sbjct: 291 FEIHVPLAGDFQVANALVAAGLAMSTGIEAKVAFSALEKLQGASGRLELVGQTKDGALAY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L+++R  T+GR+I+VFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 351 VDYAHKPDALENVLESVRPFTTGRVIIVFGCGGDRDKGKRPIMGQIAARLADVVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IR+EI+ G  G  E  +R EAIRTA+ ML   D L+VAGKGHE    + +  
Sbjct: 411 PRSEIPETIRSEIMAGAKGATEIADRAEAIRTAVGMLKAGDTLIVAGKGHEEGQTIGSVT 470

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ LG
Sbjct: 471 LP-FSDHAEVRKGLG 484


>gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
 gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
          Length = 487

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 230/497 (46%), Positives = 314/497 (63%), Gaps = 13/497 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D+    FPEL  Q+        + +I  +S+DSR +  G  FVA+ G K DG  FI
Sbjct: 1   MNLRDIAGNTFPELNGQVG---GALGDLEITGLSADSRKVAPGMAFVAVAGTKADGASFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA  ++  +  ++        +  P+L VD  R+FL++ ASR YGK PE ++AV
Sbjct: 58  ADAVSRGASVVIAGNGAAV--------TGAPLLTVDEPRRFLAVAASRFYGKQPETMVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G  +  IG T  +S    D    TTP P+ L + L+ L+ 
Sbjct: 110 TGTAGKTSVASFTRQIWAYAGHPAAMIGTTGVVSPTRNDYGSLTTPDPVSLHQLLAALAD 169

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y  AKMRLF +LLP
Sbjct: 170 EGVTHAAMEASSHGLDQFRLDGVRLAAAAFTNLGRDHMDYHPTVEDYMAAKMRLFRDLLP 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S++ +  A + G  + +VG +G F+ LK+V    +KQ   + +    
Sbjct: 230 KGSPAVIFADDPWSEQAIAAARDTGQDIRTVGRKGDFLALKRVEHFRHKQIAEVHIGDDI 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL I+ G+ + + +  LEKL    GR E VG    G   Y
Sbjct: 290 FEIHIPLAGDFQVANALVAAGLAISTGVAAPVAMAALEKLVGAAGRLELVGHTHDGALAY 349

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GRIIVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 350 VDYAHKPDALENVLTSVRPFTTGRIIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 409

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E  +R EAIR A+ ML   D L+VAGKGHE    + +  
Sbjct: 410 PRSEEPAAIRAEIMAAASCATEIADRAEAIREAVSMLTSGDTLIVAGKGHEEGQTIGSVT 469

Query: 480 KKMSVDCDIIREILGLI 496
                D   +R+ L  +
Sbjct: 470 LP-FSDHAELRKALEEV 485


>gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
 gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
          Length = 483

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 224/485 (46%), Positives = 307/485 (63%), Gaps = 12/485 (2%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F E I    +F M     +I  +++DSR +  G++FVA+ GN++DG  +I  AI 
Sbjct: 2   LFGTVFTECIENSRLFSM-----EITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIK 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+AIV      L++FS       P+L V + R  L++ A+R YG  PE ++AVTGTSG
Sbjct: 57  RGAQAIVTDCNAVLENFS------VPVLRVLDVRHSLAIAAARFYGSQPEIVVAVTGTSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SV SF++QI    GL +  IG    +S    D    TTP P+ L + L  +S++GVTH
Sbjct: 111 KTSVVSFLRQIWTHVGLCAASIGTVGIVSPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTH 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH+  + Y  AKMRLF+ LLP+++PA
Sbjct: 171 AALEASSHGLDQSRLDGVRLTAAAFTNLGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPA 230

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +++ADD YS++V+     A  R+L++G +GKFI + ++     KQ V   VE   + F  
Sbjct: 231 LVFADDIYSQKVIDIVTKARRRILTIGRKGKFITINRIEHQRLKQCVECRVENNIYTFDL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G FQV NAL+AAGL IA G+    V   LE L   PGR E VG       +Y+DYAH
Sbjct: 291 PLAGNFQVTNALMAAGLAIATGVSPKKVFHSLEILQGAPGRLELVGKTENNAPVYIDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +LE +L ++R  T GR+I+VFGCGGDRDQGKRP+MGKIA + ADI IVTDDNPR+E 
Sbjct: 351 KPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRPLMGKIAENKADIVIVTDDNPRTEM 410

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           PEKIR +I+   P  IE  +R EAI  A+ +L  +D L++AGKGHE   ++       S 
Sbjct: 411 PEKIRKDILQAAPRAIEIADRGEAISYAVGLLKAEDTLIIAGKGHENGQVIGKKTYPFSD 470

Query: 485 DCDII 489
              +I
Sbjct: 471 RLKVI 475


>gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium meliloti 1021]
 gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
 gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Sinorhizobium meliloti 1021]
 gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
          Length = 486

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 231/495 (46%), Positives = 312/495 (63%), Gaps = 12/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ DL   +FPEL  QL          +I  +++DSR ++ G +FVA+ G+K DG  +I
Sbjct: 1   MKITDLAGSNFPELSAQLKGDAAT---IEIGGITADSRQVKPGDLFVAVAGSKADGAAYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA A+V  +    +       +  P+  + + R+FL+  AS  YG+ PE ++AV
Sbjct: 58  ADALSRGASAVVAGTGTPAE-------AGAPVFAISDPRRFLAKAASSFYGRQPETMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   SG S+  IG T  ++    +    TTP P+ L K L+ L+ 
Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVAPGRTEYGSLTTPDPVSLHKLLAELAD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y  +KMRLF  LLP
Sbjct: 171 EGVTHAAMEASSHGLDQRRLDGVELAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S E +  A  AG  V +VG  G FI LK+V    +KQ   + V    
Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQ+ NALVAAGL ++ GI +      LE+L    GR E VG    G   Y
Sbjct: 291 YEIHVPLAGDFQIANALVAAGLAMSTGITAKAAFSALERLQGASGRLELVGQTKDGALAY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L  +L+++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 351 VDYAHKPDALANVLESVRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRAEI+    G  E G+R EAIR A+ ML   D L+VAGKGHE    V +  
Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRAAVGMLKTGDTLIVAGKGHEEGQTVGSVT 470

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ LG
Sbjct: 471 LP-FSDHAEVRKALG 484


>gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CNPAF512]
          Length = 486

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 236/494 (47%), Positives = 312/494 (63%), Gaps = 14/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P+   +  I+ +SSDSR +  G  FVA+ G K DG  FI
Sbjct: 1   MKLRDLAGDQFPELEAQLE-GPVGLLD--ISGLSSDSRKVAPGNAFVAVAGTKADGAGFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A+GA   + S                P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 58  ADAAARGAVVAIASQPVDAA---------IPVLAVKEPRRFLSIAAARFYGRQPETMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +    TTP P+ L K L+ L+ 
Sbjct: 109 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 169 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + +K A +AG  V +VG +G ++ LK+V    +KQ   I +  + 
Sbjct: 229 KGAPAVIFADDPWSAQAVKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+     +  LEKL    GR E VG    G   Y
Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVAPKAAMAALEKLVGASGRLELVGHTKDGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IR+EI+       E G+R  AIR A+ ML   D L+VAGKGHE    + +  
Sbjct: 409 PRSEEPAAIRSEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHEEGQTIGSVT 468

Query: 480 KKMSVDCDIIREIL 493
                D   +R+ L
Sbjct: 469 LP-FSDHAEVRKAL 481


>gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           [Rhizobium etli CIAT 652]
 gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CIAT 652]
          Length = 506

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 236/494 (47%), Positives = 316/494 (63%), Gaps = 14/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR++  G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDLFPELEAQLE-GPAGLLD--ISGLSSDSRNVAPGNAFVAVAGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S           + ++ P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 78  ADAAGRGAAVAIASQP---------VDASIPVLAVKEPRRFLSIAAARFYGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +    TTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S++ +K A +AG  V +VG +G ++ LK+V    +KQ   I +  + 
Sbjct: 249 KGAPAVIFADDPWSRQAVKAAVDAGLDVRTVGRKGDYLTLKRVEHFRHKQMAEIHIGDEI 308

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+   + +  LEKL    GR E VG    G   Y
Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVVPKVAMAALEKLVGASGRLELVGHTKDGALAY 368

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E G+R  AIR A+ ML   D L+VAGKGHE    + +  
Sbjct: 429 PRSEEPAAIRAEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHEEGQTIGSVT 488

Query: 480 KKMSVDCDIIREIL 493
                D   +R+ L
Sbjct: 489 LP-FSDHAEVRKAL 501


>gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
 gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
          Length = 483

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 220/489 (44%), Positives = 308/489 (62%), Gaps = 13/489 (2%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F E +   ++  M     +I  +S+DSR I  G+IFVA+ G+++DG  +I  A+ 
Sbjct: 2   LFGTIFTECLEDENLSSM-----EITGISADSRQILPGYIFVALQGHQDDGKHYINDALK 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+AIV      L++ S       P+L V + R  L++ A+R YG  PE ++AVTGTSG
Sbjct: 57  RGAQAIVTDCNVVLENLS------VPLLRVLDARHSLAVAAARFYGSQPETVVAVTGTSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTH 184
           K+SV SF++QI  + GL +  IG    +S    D    TTP P++L + LS ++++GVTH
Sbjct: 111 KTSVVSFLRQIWTKVGLCAASIGTLGVVSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTH 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH + + Y  AKMRLF+ LLP+++ A
Sbjct: 171 AALEASSHGLDQCRLDGVRLTAAAFTNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASA 230

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I+ADD YS++V+     A   VL++G +G+FI + ++    +KQ V   +E   + F  
Sbjct: 231 LIFADDIYSQKVIDTLTQARRHVLTIGRKGQFITINRIEHQRSKQCVECRLENNIYTFNL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G+FQV NAL+AAGL I+ GI    V   LE L   PGR E VG       +Y+DYAH
Sbjct: 291 PLAGDFQVNNALMAAGLAISTGISPDKVFRSLETLQGAPGRLELVGKTENNASVYIDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +LE +L ++R  T GR+I+VFGCGGDRDQGKRP+MGKIA + ADI I+TDDNPR+E 
Sbjct: 351 KPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRPLMGKIAENKADIVIITDDNPRTEM 410

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           P KIR +I+   P  IE  +R EAI  A+ +L   D L++AGKGHE   I+   +     
Sbjct: 411 PAKIRKDILQAAPKAIEIADRGEAITYAVGLLKAGDTLIIAGKGHENGQII-GQKTYPFS 469

Query: 485 DCDIIREIL 493
           D     E L
Sbjct: 470 DRLKAIEAL 478


>gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
 gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
          Length = 483

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 229/467 (49%), Positives = 299/467 (64%), Gaps = 8/467 (1%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  +S+DSR +  G++FVA+ G K DG  +I  AI +GA AIV      L+D S    
Sbjct: 19  IEITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIVTDCQAVLEDLS---- 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P+L V N R  L+L A+R YG  PE ++AVTGTSGK+SV SF++QI    GL +  I
Sbjct: 75  --VPVLRVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGLCAASI 132

Query: 148 GPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +S    D    TTP P+ L + L  +S +GVTH ++EASSHGLDQ RLDG++L A
Sbjct: 133 GTVGVVSPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRLDGVRLTA 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G+FTNLGRDH+DYH+  + Y  AKMRLF+ LLP  +PA+I+ADD YSK+V+     A  R
Sbjct: 193 GAFTNLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVIDAVTQARRR 252

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VL++G +G FI + +V    +KQ +   VE K + F  PL G+FQV NALVAAGL IA G
Sbjct: 253 VLTIGRKGHFITINRVEHQRSKQCIECRVENKIYTFDLPLAGDFQVANALVAAGLAIATG 312

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    V   LE L   PGR EFVG   +   +Y+DYAH   +LE +L ++R  T GR+IV
Sbjct: 313 LSPDKVFSALETLQGAPGRLEFVGKTEKNAPVYIDYAHKPEALEQVLLSVRPFTQGRLIV 372

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRDQGKR +MGKIA D ADI IVTDDNPR+E+PEKIR +I+  +P  IE  +R 
Sbjct: 373 VFGCGGDRDQGKRALMGKIAADKADIVIVTDDNPRTENPEKIRKDILQAVPTAIEIADRG 432

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI  ++ +L   D L++AGKGHE   I+   +     D     E L
Sbjct: 433 EAISYSVGLLKAGDTLIIAGKGHEDGQII-GQKTYPFSDRLKAIEAL 478


>gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 505

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 237/494 (47%), Positives = 320/494 (64%), Gaps = 15/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPE+  QL   P    +  I+ +SSDSRH+  G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDQFPEIEAQLE-GPAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S A         + ++ P+L V   R+FLS+ ASR +G+ PE ++AV
Sbjct: 78  ADAAGRGAAVAIASQA---------VETSIPVLAVKEPRRFLSIAASRFFGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +    TTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAG 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF +LLP
Sbjct: 189 EGVTHAAMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLF-QLLP 247

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + +K A +AG  V +VG +G ++ LK+V    +KQ   I ++G+ 
Sbjct: 248 KGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIDGEI 307

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G++  + +  LEKL    GR E VG    G   Y
Sbjct: 308 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMAALEKLVGASGRLELVGHTKDGALAY 367

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 368 VDYAHKPDALENVLGSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 427

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+    G  E  +R +AIR A+ ML   D L+VAGKGHE    + +  
Sbjct: 428 PRSEEPAAIRAEIMAAASGASEIADRAKAIREAVGMLRSGDTLIVAGKGHEEGQTIGSVT 487

Query: 480 KKMSVDCDIIREIL 493
                D   +R+ L
Sbjct: 488 LP-FSDHAEVRKAL 500


>gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium medicae WSM419]
 gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae
           WSM419]
          Length = 486

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 231/495 (46%), Positives = 309/495 (62%), Gaps = 12/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++DL    FPEL  QL          +I  +++DSR ++ G +FVA+ G K DG  +I
Sbjct: 1   MKIRDLAGSSFPELSAQLK---GDAANIEIGGITADSRQVRPGDLFVAVAGAKADGSAYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA A+V  +       SA   +   +  +   R+FL+  +S  +G+ PE ++AV
Sbjct: 58  TDALSRGASAVVAGT-------SARAEAGINVFTISEPRRFLAKASSSFFGRQPETMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   SG S+  IG T  +S    +    TTP P+ L K L+ L+ 
Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVSPGRAEYGSLTTPDPVSLHKLLAELAD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+ L A +FTNLGRDH+DYH T + Y  +KMRLF  LLP
Sbjct: 171 EGVTHAAMEASSHGLDQQRLDGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S + +  A  AG  V +VG  G FI LK+V    +KQ   + V    
Sbjct: 231 KGSPAVIFADDQWSADAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQV NALVAAGL ++ GI +      LE+L    GR E VG    G   Y
Sbjct: 291 YEIHVPLAGDFQVANALVAAGLAMSTGISAKAAFSALERLQGASGRLELVGQTKDGALAY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L  +L+++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 351 VDYAHKPDALSNVLESLRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRAEI+    G  E G+R EAIR A+ ML   D L+VAGKGHE    V +  
Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRVAVGMLKTGDTLIVAGKGHEEGQTVGSVT 470

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ LG
Sbjct: 471 LP-FSDHAEVRKALG 484


>gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
          Length = 490

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +          E +I  V+SDSR ++ G++F A+ G K DG  F+
Sbjct: 3   MKLKEIAL--FKELASG------NAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV      + D      +  P+L VD+ R  L++ A++ YGK P+ ++AV
Sbjct: 55  ADAVKRGASAIVAGKDTVIAD------AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+ 
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAD 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL AG+FTNLGRDH+DYH T + Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII++DD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFSDDHFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+AIVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+   PG  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAAPGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 486

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 234/494 (47%), Positives = 317/494 (64%), Gaps = 14/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR +  G +FVA+ G K DG  FI
Sbjct: 1   MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRKVAPGNVFVAVAGTKADGAGFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S A         I ++ P+  V   R+FLS+ A+R +GK P+ ++AV
Sbjct: 58  VDAAGRGAAVAIASQA---------IDASIPVFAVKEPRRFLSIAAARFHGKQPDTMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +    TTP P+ L + L+ L+ 
Sbjct: 109 TGTAGKTSVASFTRQIWAYAGHTAAMIGTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAG 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T ++Y  AKMRLF+ LLP
Sbjct: 169 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S + +K A +AG  + +VG +G ++ LK+V    +KQ   I + G+ 
Sbjct: 229 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+++ + +  LEKL    GR E VG    G   Y
Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKVAMAALEKLVGASGRLELVGHTKDGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E  +R  AIR A+ ML   D L+VAGKGHE    + +G 
Sbjct: 409 PRSEEPASIRAEIMAAAACAAEIADRASAIREAVSMLRSGDTLIVAGKGHEEGQTI-DGV 467

Query: 480 KKMSVDCDIIREIL 493
                D   +R  L
Sbjct: 468 TLPFSDHAEVRRAL 481


>gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
          Length = 484

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 230/497 (46%), Positives = 318/497 (63%), Gaps = 22/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKL+DL             I P++     + ++  +SSDSR ++ G IF A+ G+K DG 
Sbjct: 1   MKLRDL-----------DGILPVEGTASADLEVTGISSDSRQVKPGVIFFALAGSKADGS 49

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            +   A  +GA AIV +   ++           P+L VD+ R  L+L A+R +G  P+ +
Sbjct: 50  AYAADAARRGAVAIVTAKGSTVGGHP------IPVLAVDDPRLALALGAARFFGNQPQTM 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSY 176
           +AVTGTSGK+SVA+F +QI +++G ++  IG T  ++    +    TTP P+ L + L  
Sbjct: 104 VAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLKE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+  GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  AK+RLF+ 
Sbjct: 164 LADAGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDT 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LLPK +PA+I+ADD +S   ++ A  AG  VL+VG  G F+ LK+V    ++Q+  +   
Sbjct: 224 LLPKGAPAVIFADDPWSAPTIQAARAAGLEVLTVGRHGDFLRLKRVEHERHRQRAEVEAN 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  ++   PL G+FQ+ NALV+AGL I+ GI +A  L  LEKL   PGR + VGT + G 
Sbjct: 284 GVLYEIDLPLAGDFQISNALVSAGLAISTGIPTAKALMSLEKLKGAPGRLDLVGTTANGA 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVT
Sbjct: 344 PVYVDYAHKPDALENVLTSVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSE PE IRA I+   PG IE G+R +AI  A+ ML+  D L+VAGKGHE    + 
Sbjct: 404 DDNPRSEVPETIRAAIMAAAPGAIEIGDRRKAIHDAVAMLDAGDTLIVAGKGHEEGQTIG 463

Query: 477 NGEKKMSVDCDIIREIL 493
           + E     D + +R  L
Sbjct: 464 S-ETLHFSDHEEVRAAL 479


>gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 490

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 233/485 (48%), Positives = 312/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +          E +I  V+SDSR ++ G++F A+ G K DG  F+
Sbjct: 3   MKLKEIAL--FKELASG------DAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK P+ ++AV
Sbjct: 55  ADAVKRGASAIIAGKDTAIAD------AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+ 
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAD 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL AG+FTNLGRDH+DYH T + Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII++DD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFSDDHFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+AIVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+   PG  E G+R EAI TA+ M+   D LVVAGKGHE   IV +  
Sbjct: 409 PRSEVPAQIRSEIMAAAPGATEIGDRREAIFTAVSMMQAGDTLVVAGKGHEEGQIVGSIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 486

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 171/503 (33%), Positives = 273/503 (54%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DLI     E I+ L      +  + I +++ +S++ + G +FV I G K DGH +I
Sbjct: 1   MKLKDLI-----ENIDVLETNVGDFG-KDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G   ++  ++
Sbjct: 55  NEAIQNGACLVVVDEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I +  G     IG     I S   + + TTP    L K    +
Sbjct: 111 GVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSIEIEAQHTTPESYDLQKLFWQM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF   
Sbjct: 171 KNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF--- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ ADD + K +++   ++   V         +  + +    NK Q  +   G
Sbjct: 228 -GMSKKRVVNADDMWGKRIIEMYPDS---VTYAKDSDAQVFARNIKLFVNKNQFELWYNG 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  +    +PG F +YN+L A+  CI++GI    + + LE L  VPGRFE V +N +   
Sbjct: 284 EKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQK-FT 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + L  ++K +  +T GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 343 VVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTS 402

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 403 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+ +       + ++++ IL  I
Sbjct: 463 ILKDKTIP-FDEREVVKNILKEI 484


>gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
 gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
          Length = 490

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  A C V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella bacilliformis KC583]
 gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella
           bacilliformis KC583]
          Length = 483

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 222/463 (47%), Positives = 291/463 (62%), Gaps = 7/463 (1%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  +S++SR I  G++FVA+ GNK DG  +I  AI +GA  +V    +  ++ S    
Sbjct: 19  IKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS---- 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P+L V + R  L+L A+R Y   PE +LAVTGTSGK+SV SF++QI Q  G  +  I
Sbjct: 75  --VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASI 132

Query: 148 GPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +S    D    TTP P+ L + L  L+ +GVTH ++EASSHGLDQ RLDG+ L A
Sbjct: 133 GTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRLDGVNLAA 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH   + Y  AKMRLF+ LLP ++PA+I ADD YS+EV+     AG R
Sbjct: 193 AAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRR 252

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            L++G +G+FI + ++    +KQ V   +E   + F  PL G FQV NAL+AAGL I  G
Sbjct: 253 ALTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLAITTG 312

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             S  V   L+KL   PGR E V        +YVDYAH   +LE +L   R  T GR+IV
Sbjct: 313 SSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPGRLIV 372

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRDQGKRP+MGKIA+D ADI IVTDDNPR+E+PEKIR +I+   PG +E  +R 
Sbjct: 373 VFGCGGDRDQGKRPLMGKIAVDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEIADRS 432

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           EAI  A+ +L   D L++AGKGHE   +V    +  S   + I
Sbjct: 433 EAIYYAVGLLEAGDTLIIAGKGHENGQVVGQETRPFSDRLEAI 475


>gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M644/93/1]
 gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M13/05/1]
          Length = 488

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  A C V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
 gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
          Length = 490

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 312/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L   P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIA------LFNELP--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 486

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 172/503 (34%), Positives = 273/503 (54%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DLI     E I+ L      + ++ I +++ +S++ + G +FV I G K DGH +I
Sbjct: 1   MKLLDLI-----ENIDVLETNVGDF-DKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G   ++  ++
Sbjct: 55  NEAIQNGACLVVVDEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I +  G     IG     I S   + + TTP    L K    +
Sbjct: 111 GVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S+GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF   
Sbjct: 171 KSEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF--- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ ADD + K +++   ++   V         +  + +    NK Q  +   G
Sbjct: 228 -GMSKKRVVNADDMWGKRIIEMYPDS---VTYAKDSDAQVFARNIKLFVNKNQFELWYNG 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  +    +PG F +YN+L A+  CI++GI    + + LE L  VPGRFE V +N +   
Sbjct: 284 EKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQK-FT 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + L  ++K +  +T GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 343 VVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTS 402

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 403 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+ +       + ++++ IL  I
Sbjct: 463 ILKDRTIP-FDEREVVKNILKEI 484


>gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 5 str. 513]
          Length = 488

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 312/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++       L N+L   P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIA------LFNELP--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
 gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
          Length = 490

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 236/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
 gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
          Length = 490

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis B2/94]
 gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
          Length = 488

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 236/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. 83/13]
 gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
 gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
          Length = 488

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
 gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
          Length = 483

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 213/485 (43%), Positives = 295/485 (60%), Gaps = 9/485 (1%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   L N ++  P    + +I+ ++ DSR +  G++FVA+ G+K DG  FI  A A+GA 
Sbjct: 2   NLARLANGIAHAPDNLDKTEISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKGAV 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++ SS        A + ++ P++  DN R   +  A+R Y K PE ++AVTGT+GK+S+
Sbjct: 62  AVLTSSD-------AVVETDLPVIRADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSI 114

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVE 188
           ASF++QI   +GL +  IG T  +S    D    TTP P+ LA+ L+ L  +GVTH S+E
Sbjct: 115 ASFLRQIWTATGLKAASIGTTGVVSPSRNDYGTLTTPDPVALAELLASLEGEGVTHASME 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHG+DQ RLDG++L AG FTNLG DH+DYH   ++YF AKM LF  LLPK +PA+I  
Sbjct: 175 ASSHGIDQFRLDGVRLAAGGFTNLGHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINT 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD +S   ++ A   GC V +VG  G  + LK++     +Q   +         + PL G
Sbjct: 235 DDQWSGRAIEVATGVGCDVRTVGRNGSLLALKRLEHERERQVAEVKTPDGIQRVVLPLAG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           EFQ+ NALVAAGL I  G      LE LE L    GR E  G  + G  ++VDYAH   +
Sbjct: 295 EFQMSNALVAAGLAIVTGTPVKAALETLENLKGASGRLEKAGMTAGGVPVFVDYAHKPEA 354

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R  T+GR+I+V GCGGDRD+ KRP+MG+IA  LAD+ IVTDDNPRSEDP  I
Sbjct: 355 LEHVLRAVRPFTTGRVILVMGCGGDRDKTKRPMMGEIANRLADVVIVTDDNPRSEDPAVI 414

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           R+EI+       E G+R EAIR A+      D ++VAGKGHET  +V +       D + 
Sbjct: 415 RSEIMAAAGEAREIGDRREAIRAAVGEARTGDTVIVAGKGHETGQMVGS-INHPFSDHEE 473

Query: 489 IREIL 493
           +R  +
Sbjct: 474 VRRAI 478


>gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
 gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
          Length = 483

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 220/485 (45%), Positives = 300/485 (61%), Gaps = 12/485 (2%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ + F E I         +    I  +S+DSR I  G++FVA+ GN+ DG  ++  AI 
Sbjct: 2   LLGELFIECIKDDY-----FASIDITGISADSRQILPGYVFVALKGNQRDGREYVNDAIK 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  IV    +  ++      S  P++ V N R  L++ A+R Y   PE ++AVTGTSG
Sbjct: 57  RGARVIVTDHNFVFEN------SLVPVVRVLNVRHSLAIAAARFYNSQPEIMVAVTGTSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTH 184
           K+SV SF++QI +  G  +  IG    +S    D    TTP P+ L + L  ++++GVTH
Sbjct: 111 KTSVVSFIRQIWKYVGCCAASIGTVGVVSPKRHDLGSLTTPDPVMLQRLLCEIANEGVTH 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++EASSHGLDQ R+DG++L A +FTNLGRDH+DYH+  + YF+AKMRLF  LLP+++PA
Sbjct: 171 AALEASSHGLDQCRIDGVRLAAAAFTNLGRDHMDYHKCIEDYFHAKMRLFNTLLPQDAPA 230

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I+ADD YS++V+     A  +VL++G  GKFI L +V     KQ V   +    + F  
Sbjct: 231 LIFADDIYSQKVIDIVRRAHRQVLTIGRTGKFITLNRVEHQRLKQCVECRMGNNIYTFDL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G+FQV NAL+AAGL IA      +V   LEKL   PGR E VG    G  +YVDYAH
Sbjct: 291 PLVGDFQVANALMAAGLAIATRASPDMVFRSLEKLQGAPGRLELVGKTEDGAPVYVDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +LE +L ++R  T GR+I+VFGCGGDRDQGKR +MG IA + ADI IVTDDNPR+E 
Sbjct: 351 KPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRALMGTIAGNKADIVIVTDDNPRTEA 410

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           PEKIR +I+  +P  IE  +R EAI  A+ +L   D L+VAGKGHE   I+       S 
Sbjct: 411 PEKIRKDILQAVPEAIEIADRAEAIYYAVRLLKTGDTLIVAGKGHENGQIIGQKTYPFSD 470

Query: 485 DCDII 489
              +I
Sbjct: 471 RLQVI 475


>gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
 gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
          Length = 490

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
 gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
          Length = 499

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 477

Query: 480 KKMSV 484
              S 
Sbjct: 478 LPFSD 482


>gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis ATCC 23445]
 gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
 gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC
           23445]
 gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
          Length = 488

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
 gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
          Length = 488

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 234/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +       +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEITL--FNELASG------EAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
          Length = 490

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 482

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/502 (31%), Positives = 262/502 (52%), Gaps = 32/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+     E+               I+ V  DSR  +  ++F+AI G K DG L++
Sbjct: 1   MRLVDLLKGVKHEI--------KGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V     S             +++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVTDRDISE-------YPGVTVVLVEDARAAMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+SV   ++ I ++       +G     I         TTP  + L +  S +
Sbjct: 106 GITGTNGKTSVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  HR+D        FTNL +DH+D+H++ + Y   K +LF+  
Sbjct: 166 VNEGVKYVVMEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFK-- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +  ++I  DD YS  +++ +     +VL+ G +   ++  K++    +  +  + ++
Sbjct: 224 -MAKKASVINIDDKYSSMMIESSKG---KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQ 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K  +    +PG F VYNAL A  +   +GI    V E L  +  V GRFE V T  R  
Sbjct: 280 DKKEEISLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVT-VKGRFEPVET-GRDF 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++DYAHT + +  I++ ++   +GR I+VFG GGDRD+ KRP+MG++A   AD  I+T
Sbjct: 338 YVFIDYAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILT 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSE+P++I A+I  GI      ++   +R EAIR A+    K DV+++AGKGHET 
Sbjct: 398 SDNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETY 457

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I+ +       + +I++EIL 
Sbjct: 458 QIIGDKVIP-FDEREIVKEILA 478


>gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 492

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/502 (31%), Positives = 262/502 (52%), Gaps = 32/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+     E+               I+ V  DSR  +  ++F+AI G K DG L++
Sbjct: 11  MRLVDLLKGVKHEI--------KGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V     S             +++V++ R  ++  AS  Y      +  +
Sbjct: 63  EEAIKNGAVAVVTDRDISE-------YPGVTVVLVEDARAAMAKIASNFYNNPTSKLTLI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+SV   ++ I ++       +G     I         TTP  + L +  S +
Sbjct: 116 GITGTNGKTSVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLM 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  HR+D        FTNL +DH+D+H++ + Y   K +LF+  
Sbjct: 176 VNEGVKYVVMEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFK-- 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +  ++I  DD YS  +++ +     +VL+ G +   ++  K++    +  +  + ++
Sbjct: 234 -MAKKASVINIDDKYSSMMIESSKG---KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQ 289

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K  +    +PG F VYNAL A  +   +GI    V E L  +  V GRFE V T  R  
Sbjct: 290 DKKEEISLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVT-VKGRFEPVET-GRDF 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++DYAHT + +  I++ ++   +GR I+VFG GGDRD+ KRP+MG++A   AD  I+T
Sbjct: 348 YVFIDYAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILT 407

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSE+P++I A+I  GI      ++   +R EAIR A+    K DV+++AGKGHET 
Sbjct: 408 SDNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETY 467

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I+ +       + +I++EIL 
Sbjct: 468 QIIGDKVIP-FDEREIVKEILA 488


>gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 1 str. 9-941]
 gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brucella abortus bv. 1 str. 9-941]
 gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramyl-tripe [Brucella
           melitensis biovar Abortus 2308]
 gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
          Length = 488

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
 gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
          Length = 490

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 234/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +       +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIAL--FNELASG------EAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella canis ATCC 23365]
 gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 3 str. 686]
 gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC
           23365]
          Length = 488

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 234/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +       +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIAL--FNELASG------EAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
 gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
          Length = 499

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 477

Query: 480 KKMSV 484
              S 
Sbjct: 478 LPFSD 482


>gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
          Length = 499

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 234/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 477

Query: 480 KKMSV 484
              S 
Sbjct: 478 LPFSD 482


>gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
 gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
          Length = 490

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis
           M5-90]
          Length = 490

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 234/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis ATCC 23457]
 gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC
           23457]
          Length = 488

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 234/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
 gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 477

Query: 480 KKMSV 484
              S 
Sbjct: 478 LPFSD 482


>gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 490

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 488

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 499

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 236/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGNIT 477

Query: 480 KKMSV 484
              S 
Sbjct: 478 LPFSD 482


>gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 477

Query: 480 KKMSV 484
              S 
Sbjct: 478 LPFSD 482


>gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 488

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 236/485 (48%), Positives = 311/485 (64%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis]
          Length = 483

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 220/463 (47%), Positives = 289/463 (62%), Gaps = 7/463 (1%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  +S++SR I  G++FVA+ GNK DG  +I  AI +GA  +V    +  ++ S    
Sbjct: 19  IKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS---- 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P+L V + R  L+L A+R Y   PE +LAVTGTSGK+SV SF++QI Q  G  +  I
Sbjct: 75  --VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASI 132

Query: 148 GPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +S    D    TTP P+ L + L  L+ +GVTH ++EASSHGL+Q RLDGI L A
Sbjct: 133 GTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRLDGINLAA 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH   + Y  AKMRLF+ LLP ++PA+I ADD YS+EV+     AG R
Sbjct: 193 AAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRR 252

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            L++G +G+FI + ++    +KQ V   +E   + F  PL G FQV NAL+AAGL I  G
Sbjct: 253 ALTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLAITTG 312

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             S  V   L+KL   PGR E V        +YVDYAH   +LE +L   R  T GR+IV
Sbjct: 313 SSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPGRLIV 372

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRDQ KRP+MGK+ LD ADI IVTDDNPR+E+PEKIR +I+   PG +E  +R 
Sbjct: 373 VFGCGGDRDQRKRPLMGKLQLDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEIADRS 432

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           EAI  A+ +L   D L++AGKGHE   +V    +  S   + I
Sbjct: 433 EAIYYAVGLLEAGDTLIIAGKGHENGQVVGQETRPFSDRLEAI 475


>gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 500

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/500 (35%), Positives = 274/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+DLI     E I+ L      + ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 15  LKLKDLI-----ENIDVLETNVKDF-DKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G   ++  ++
Sbjct: 69  DEAIKNGARLVVVDEFFD----TSKIDGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I + +      IG     I S   + + TTP    L K    +
Sbjct: 125 GVTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQM 184

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV  V +E SSH L+ +R+       G FTNL +DH+D+H T + YF AK++LFE  
Sbjct: 185 KNEGVDSVVMEVSSHSLELYRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFE-- 242

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ ADD++ K +++   +    V         +  K V    NK Q  +   G
Sbjct: 243 --MSKKRVVNADDSWGKRIIEMYPDC---VTYAKDSDAQVCTKNVKLFVNKNQFELWYNG 297

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F +YN+L AA  CI++GI+   + + LE L  VPGRFE V +N R   
Sbjct: 298 KKEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNER-FT 356

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 357 IVIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTS 416

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 417 DNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKGHETYQ 476

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       +  I+++IL
Sbjct: 477 ILKDRTIP-FDERKIVKDIL 495


>gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 500

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/500 (33%), Positives = 272/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+DLI     E I+ L      + ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 15  LKLKDLI-----ENIDVLETNVGDF-DKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +    ++  ++
Sbjct: 69  DEAIQNGARLVVVDEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFAHPSKDFLLI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I + +G     IG     I S   + + TTP    L K    +
Sbjct: 125 GVTGTNGKTSTTFMIKSILEANGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQM 184

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S+GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF+AK++LF   
Sbjct: 185 KSEGVDSVVMEVSSHSLELFRVYACDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLF--- 241

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ ADD++ K +++   +              +  + +    NK Q  +    
Sbjct: 242 -GMSKKRVVNADDSWGKRIIEMYPDCITY---AKDSDANVCAQNIKLFVNKNQFDLYYNN 297

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  + L  +PG F +YN+L AA  CI +GI+   + + LE+L  VPGRFE V +N +   
Sbjct: 298 KKENILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVESNQK-FT 356

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 357 VVIDYAHTPDGLLNLMKTVNEVADGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTS 416

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 417 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQ 476

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       + ++++ IL
Sbjct: 477 ILKDRTIP-FDEREVVKNIL 495


>gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 492

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 180/503 (35%), Positives = 268/503 (53%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +L+ +    +I +  I    W E ++  +  DSR ++ G IFVAI G   DGH FI
Sbjct: 1   MKIAELV-EILKTIITKNGI---NWAELEVTGIEQDSRQVKPGNIFVAIKGFTADGHDFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            + I +    IV                    L+V ++R+ L+L A   YG   E I  +
Sbjct: 57  EKVIEKKPALIVAEEERPGIF-------GVNHLLVKDSRQALALLARTFYGNPTEKISVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   V  + +  G  +  IG     I         TTP  + L +  + +
Sbjct: 110 GVTGTNGKTTVTHLVTSLLESFGYKTGLIGTIYNRIGDKILPVTNTTPDALSLQRLFAEM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V+HV++E SSH L Q R+ GI    G FTNL +DH+D+H++ + YFNAK  LF+ L
Sbjct: 170 VKSEVSHVAMEVSSHALVQKRVLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKIL 229

Query: 238 LPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
             +++ P +I  DD Y + ++K   +     ++ G  +   I  K V   ++    T+  
Sbjct: 230 AEQKALPGVINKDDFYGQRILKEVAHPF---VTYGIKEQADITAKNVELTNSGTAFTLCY 286

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + +++     L G F VYN L A G  + +G     ++++L  L+ VPGRFE +    + 
Sbjct: 287 QEEEYPVKVKLLGLFNVYNILAAVGTLLTLGFSLPDIVKNLPLLNPVPGRFELID-EGQD 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + LE ILK+ R IT GR+I VFGCGGDRD+ KRP MGKI+  LADI I+
Sbjct: 346 FAVIVDYAHTPDGLENILKSARAITPGRVIAVFGCGGDRDKTKRPKMGKISATLADITII 405

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+EDPE I  EI  G        ++++ +R +AI+TA+ +    D +V+AGKGHE
Sbjct: 406 TSDNPRTEDPEAIINEIEKGFFDALPGKYLKEVDRKKAIKTALLLAKPGDTVVIAGKGHE 465

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+    K    D  + REIL
Sbjct: 466 DYQIIGT-TKYPFDDRVVAREIL 487


>gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella schoenbuchensis R1]
          Length = 483

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/458 (46%), Positives = 287/458 (62%), Gaps = 7/458 (1%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  +SSDSR +  G++FVA+ G + DG  ++  AI +GA  IV     +L+       
Sbjct: 19  IEITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIVTDYNCALEGVY---- 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P+L V + R  L++ A+R YG  PE + AVTGTSGK+SV SFV+QI + +G  +  I
Sbjct: 75  --VPVLRVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTSVVSFVRQIWKHAGFCAASI 132

Query: 148 GPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +S    D    TTP P+ L + L  ++ +GVTH ++EASSHGLDQ RLDG++L A
Sbjct: 133 GTVGVVSPKRNDYGSLTTPDPVMLQRLLCEIAGEGVTHAALEASSHGLDQGRLDGVRLAA 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH   + Y  AKMRLF+ LLP ++PAII+ADD YS++V+     AG  
Sbjct: 193 AAFTNLGRDHMDYHPCVEDYLRAKMRLFDTLLPCDAPAIIFADDVYSQKVIDHVTRAGRP 252

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VL++G  GKFI + ++     KQ V   +    + F  PL GEFQV NAL+AAGL IA  
Sbjct: 253 VLTIGRSGKFITINRIEHQRLKQCVECRMGNDIYTFDLPLAGEFQVTNALMAAGLAIATN 312

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +  + V   L+KL   PGR E VG       +YVDYAH   +LE +L ++R  T GR+I+
Sbjct: 313 VPPSSVFRSLKKLQGAPGRLELVGNTKDNAFVYVDYAHKPEALEQVLLSVRPFTLGRLIL 372

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGGDRDQGKRP+MGKIA   ADI IVTDDNPR+EDP KIR +I+    G +E  +R 
Sbjct: 373 VFGCGGDRDQGKRPLMGKIAASKADIVIVTDDNPRTEDPAKIRKDILQAASGAMEIADRG 432

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           EAI  A+ +L   D L++AGKGHE   I+       S 
Sbjct: 433 EAIDYAVRLLEAGDTLIIAGKGHENGQIIGKTTYPFSD 470


>gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. 1-1C]
          Length = 484

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 220/486 (45%), Positives = 304/486 (62%), Gaps = 13/486 (2%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ + F E I    +  +     +I  +S+DSR +  G++FVA+ GN+ DG  ++  AI 
Sbjct: 2   LLGELFVECIKDDCLASI-----EITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQ 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  I+  + +  ++ S       P++ V + R  L++ A+R Y   PE ++AVTGTSG
Sbjct: 57  RGARVIITDNNFVFENLS------IPVIHVLDARHKLAIAAARFYNSQPETVVAVTGTSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSY-LSSQGVT 183
           K+SV SFV+QI +  G  +  IG    +S    D    TTP P+ L + L    + +GVT
Sbjct: 111 KTSVVSFVRQIWEYIGFCAASIGTVGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVT 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H + EASSHGLDQ R+DG+ L A +FTNLGRDH+DYH++ + YF+AKMRLF  LLP+++P
Sbjct: 171 HAAFEASSHGLDQCRIDGVHLAAAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAP 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I+ADD YS++V+     A  +VL++G  GKFI L +V     KQ+V   +    + F 
Sbjct: 231 ALIFADDVYSQKVIDTVRQAHRQVLTIGRTGKFITLNRVEHQRLKQRVECRMGNNIYTFD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G+FQV NAL+AAGL IA    S +V   LEKL   PGR E VG    G  IYVDYA
Sbjct: 291 LPLAGDFQVTNALMAAGLAIATNAPSDMVFRSLEKLQGAPGRLELVGNTEDGAPIYVDYA 350

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +LE +L ++R  T GR+++VFGCGGDRDQGKR +MGKIA + ADI IVTDDNPR+E
Sbjct: 351 HKPEALEQMLLSVRPFTQGRLVLVFGCGGDRDQGKRALMGKIAGNKADIVIVTDDNPRTE 410

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            PEKIR +I+  +P  IE  +R +AI  A+E+L   D L+VAGKGHE   I+       S
Sbjct: 411 APEKIRKDILQAVPEAIEIADRGQAIEYAVELLKAGDTLIVAGKGHENGQIIGQEIYPFS 470

Query: 484 VDCDII 489
               +I
Sbjct: 471 DRLKVI 476


>gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. AR 15-3]
          Length = 484

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 212/486 (43%), Positives = 298/486 (61%), Gaps = 13/486 (2%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ + F E I    +  +     +I  +S+DSR +  G++FVA+ GN+ DG  ++  AI 
Sbjct: 2   LLGELFIECIKDDYLASI-----EITGISADSRQVLPGYVFVALKGNQRDGREYVNDAIK 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  I+  + +  ++ S       P++ V   R  L++ A+R Y   PE ++AVTGTSG
Sbjct: 57  RGARVIITDNNFVFENLS------IPVIHVSEVRHRLAIAAARFYNSQPEIMVAVTGTSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSY-LSSQGVT 183
           K+SV SF++QI +  G  +  IG    +S    D    TTP P+ L + L    + +GVT
Sbjct: 111 KTSVVSFIRQIWEYVGFCAASIGTVGVVSPKRHDIGFLTTPDPVMLQRLLYEIANDEGVT 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H + EASSHG+DQ R+DG+ L A +FTNLGRDH+DYH   + YF+AKMRLF  +LP+++P
Sbjct: 171 HAAFEASSHGIDQCRIDGVHLAAAAFTNLGRDHMDYHGCIEDYFHAKMRLFNTILPQDAP 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I+ADD YS++V+     A  +VL++G  GKFI L +V     KQ+V   +    + F 
Sbjct: 231 ALIFADDVYSQKVIDIVRQAHRKVLTIGRTGKFITLNRVEHQRLKQRVECRMGNNIYTFD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G+FQV NAL+AAGL IA      +V   LEKL   PGR E VG    G  +YVDYA
Sbjct: 291 LPFSGDFQVANALMAAGLAIATNAPPDMVFRSLEKLQGPPGRLELVGKTKDGAPVYVDYA 350

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +LE +L ++R  T GR+I+VFGCGGDRD+GKR +MGKIA + AD+ IVTDDNPR+E
Sbjct: 351 HKPEALEQVLLSVRPFTQGRLILVFGCGGDRDRGKRALMGKIAENKADVVIVTDDNPRTE 410

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            PEKIR +I+  +P  IE  +R +AI  A+ +L   D L+VAGKGHE   I+       S
Sbjct: 411 APEKIRKDILQVVPEAIEIADRGKAIDYAVRLLKAGDTLIVAGKGHENGQIIGRETYPFS 470

Query: 484 VDCDII 489
               +I
Sbjct: 471 DRLKVI 476


>gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 489

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 230/494 (46%), Positives = 312/494 (63%), Gaps = 14/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR +  G  FVA+ G K DG  FI
Sbjct: 4   MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRKVMPGNAFVAVAGTKADGAGFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A              ++   S  + ++ P+  V   R+FLS+ A+R +G+ P+ ++AV
Sbjct: 61  VDA---------AGRGAAIAIASQAVDASIPVFAVKEPRRFLSIAAARFHGRQPDTMVAV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +    TTP P+ L   L+ L+ 
Sbjct: 112 TGTAGKTSVASFTRQIWAYAGHAAAMIGTTGVVSPTRNEYGSLTTPDPVSLHALLAELAG 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 172 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 231

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S + +K A +AG  + +VG +G ++ LK+V    +KQ   I + G+ 
Sbjct: 232 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+++ + +  LEKL    GR E VG    G   Y
Sbjct: 292 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKIAMAALEKLVGASGRLELVGHTKDGALAY 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 352 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 411

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E  +R  AIR A+ ML   D L+VAGKGHE    +  G 
Sbjct: 412 PRSEEPASIRAEIMTAASCAAEIADRAMAIREAVGMLRSGDTLIVAGKGHEEGQTI-GGV 470

Query: 480 KKMSVDCDIIREIL 493
                D   +R+ L
Sbjct: 471 TLPFSDHAEVRKAL 484


>gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 484

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 218/486 (44%), Positives = 301/486 (61%), Gaps = 13/486 (2%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ + F E I    +  +     +I  +S+DSR +  G++FVA+ GN+ DG  ++  AI 
Sbjct: 2   LLGELFIECIKDDCLASI-----EITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQ 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  I+  + +  ++ S       P++ V + R  L++ A+R Y   PE ++AVTGTSG
Sbjct: 57  RGARVIITDNNFVFENLS------IPVIHVLDVRHKLAIAAARFYNSQPETVVAVTGTSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSY-LSSQGVT 183
           K+SV SFV+QI +  G  +  IG    +S    D    TTP P+ L + L    + +GVT
Sbjct: 111 KTSVVSFVRQIWEYIGFCAASIGTVGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVT 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H + EASSHGLDQ R+DG+ L A +FTNLGRDH+DYH++ + YF+AKMRLF  LLP+++P
Sbjct: 171 HAAFEASSHGLDQCRIDGVHLAAAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAP 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I+ADD YS++V+     A  +VL++G  GKFI L +V     KQ V   +    + F 
Sbjct: 231 ALIFADDVYSQKVIDTVRQAHRQVLTIGRTGKFITLNRVEHQRLKQCVECRMGNNIYTFD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G+FQV NAL+AAGL IA      +V   LEKL   PGR E VG    G  +YVDYA
Sbjct: 291 LPLAGDFQVTNALMAAGLAIATNAPPDMVFRSLEKLQGAPGRLELVGNTEDGAPVYVDYA 350

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +LE +L ++R  T GR+I+VFGCGGDRDQGKR +MGKIA + ADI IVTDDNPR+E
Sbjct: 351 HKPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRALMGKIAGNKADIMIVTDDNPRTE 410

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            PEKIR +I+  +P  IE  +R +AI  A+ +L   D L+VAGKGHE   I+       S
Sbjct: 411 APEKIRKDILQAVPEAIEIADRGQAIEYAVGLLKAGDTLIVAGKGHENGQIIGQEIYPFS 470

Query: 484 VDCDII 489
               +I
Sbjct: 471 DRLKVI 476


>gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 486

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 170/500 (34%), Positives = 271/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DLI     E I+ L      + ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 1   MKLKDLI-----ENIDVLETNVKDF-DKDITDIAYNSKNAKEGCAFVCIKGFKADGHEYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G   ++  ++
Sbjct: 55  DEAIQNGACLVVVEEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I + +      IG     I S   + + TTP    L K    +
Sbjct: 111 GVTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF   
Sbjct: 171 KNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF--- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ ADD + K +++   ++   V         +  + +    NK Q  +   G
Sbjct: 228 -GMSKKRVVNADDRWGKRIIEMYPDS---VTYAKDSDAQVCARNIKLFVNKNQFELWYNG 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  +    +PG F +YN+L A+  CI++GI    + + LE L  VPGRFE V +N +   
Sbjct: 284 EKEEITLNIPGLFSIYNSLAASACCISLGIKLDTIKKGLENLKAVPGRFEIVESNEK-FT 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 343 IVIDYAHTPDGLLNLMKTVDEVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTS 402

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 403 DNPRTEDPLKIIADILEGIRKTNVEYMVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       +  I+++IL
Sbjct: 463 ILKDRTIP-FDERRIVKDIL 481


>gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
 gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
          Length = 495

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/500 (33%), Positives = 272/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+DLI     E I+ L      + ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 10  LKLKDLI-----ENIDVLETNVGDF-DKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYI 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA  IVV   +     ++ I+     +   NTRK L++ ++  +    ++  ++
Sbjct: 64  DEAIQNGARLIVVDEFFD----TSKIKGKIDYIKTSNTRKALAVMSANFFAHPSKDFLLI 119

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I +  G     IG     I S   + + TTP    L K    +
Sbjct: 120 GVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQM 179

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF+AK++LF   
Sbjct: 180 RNEGVDSVVMEVSSHSLELFRVYASDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLF--- 236

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +I ADD++ K +++   +              +  + +    NK Q  +    
Sbjct: 237 -GMSKKRVINADDSWGKRIIEMYPDCMTY---AKDSNATVCARNIKLYVNKNQFDLWYND 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  + L  +PG F +YN+L AA  CI +GI+   + + LE+L  VPGRFE V +N +   
Sbjct: 293 KKEEILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVESNEK-FT 351

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + L  +++ +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 352 VVIDYAHTPDGLLNLMRTVNEVADGRKVLLFGCGGDRDRAKRPIMGEIAGRMADFVIVTS 411

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 412 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQ 471

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       + ++++ IL
Sbjct: 472 ILKDRTIP-FDEREVVKNIL 490


>gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 495

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/500 (34%), Positives = 272/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+DLI     E I+ +      + ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 10  LKLKDLI-----ENIDAMETNVKDF-DKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYI 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA  +VV   +     ++ I      +   NTRK L++ ++  +G   ++  ++
Sbjct: 64  DEAIKNGARLVVVDEFFD----TSKIEGKVDYIKTSNTRKALAVMSANFFGHPSKDFLLI 119

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I + +      IG     I S   + + TTP    L K    +
Sbjct: 120 GVTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQM 179

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF   
Sbjct: 180 KNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF--- 236

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ ADD++ K +++   +    V         +  K +    NK Q  +   G
Sbjct: 237 -GMSKKRVVNADDSWGKRIIEMYPDC---VTYAKDSDAQVCAKNIKLFVNKNQFEMWYNG 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F +YN+L AA  CI++GI+   + + LE L  VPGRFE V +N R   
Sbjct: 293 KKEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNER-FT 351

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 352 IVIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTS 411

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 412 DNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKGHETYQ 471

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       +  I+++IL
Sbjct: 472 ILKDRTIP-FDERRIVKDIL 490


>gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 480

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 200/477 (41%), Positives = 278/477 (58%), Gaps = 3/477 (0%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       I  +++DSR +Q G++F A  G+  DG  F+P+A+   A A++ ++  + +
Sbjct: 3   LPDTADGLSIEGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAVAVLCAT-NAAE 61

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              A +     +L  D  R   S  A+R YG+ P+ I+AVTGT+GK+SVA FV+QI Q +
Sbjct: 62  AVRALVPPTVAVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSVAHFVRQIFQAA 121

Query: 141 GLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  +  +G    I         LTTP P+ L K L+ L+++G+ + ++EASSHGLDQ+RL
Sbjct: 122 GHPAASLGTLGIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALEASSHGLDQYRL 181

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG++L A +FTNLGRDH+DYH T + Y  AK+RLF ELLP     ++   + Y+  V+  
Sbjct: 182 DGVRLTAAAFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDPGEKYTDRVLAI 241

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A   G  V +VG  GK + L  +      Q +T+     ++    PL G FQV NAL+AA
Sbjct: 242 AEERGLPVFTVGETGKDLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIGRFQVSNALIAA 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           GL I  GID+   L  LE L   PGR E  GT   GG ++VDYAH  ++L+  L  ++  
Sbjct: 302 GLAITAGIDAGAALRALENLKGAPGRLELAGTTPAGGMVFVDYAHKPDALDKALAALKPF 361

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G + VV G GGDRD GKRP+MG+ A   AD+ IVTDDNPRSEDP  IR  ++ G PG 
Sbjct: 362 AEGSLSVVVGAGGDRDPGKRPLMGEAAARHADLVIVTDDNPRSEDPATIRKAVLAGAPGG 421

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +E G+R EAI   I  L   D+L VAGKGHET  IV +       D D +R+ L  +
Sbjct: 422 LEIGDRAEAIAEGIRRLKSGDILCVAGKGHETGQIVGD-TVIPFSDHDSVRQALNQL 477


>gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelagibaca bermudensis HTCC2601]
 gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. HTCC2601]
          Length = 494

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 190/476 (39%), Positives = 272/476 (57%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +     R+ ++  +S DSR +  G +F A+ G K  G  FI  A+AQGA A++  
Sbjct: 8   LSDLGLTARGGRDARVTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGAVAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +    +A   S+  +++    R  L+   +  +G  P  ++AVTGT+GK+SVASFV+
Sbjct: 68  AEGARLAEAALAESDVALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTSVASFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           ++ Q  G  +  +G T     +    R TTP PI L KAL+  +S GV H ++EASSHGL
Sbjct: 128 RLWQELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L+A  FTN  +DH+DYH   + YF AK  LF  +LP+E  A++  DDA   
Sbjct: 188 DQRRLDGVQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARGI 247

Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +++  A   G  VL+VG  +G  + L         Q++ +S  G        L G FQ  
Sbjct: 248 DMLAIARARGQEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQGQ 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NALVAAGL IA G ++  V   L +L  V GR +   T   G  +YVDYAHT +++   +
Sbjct: 308 NALVAAGLVIACGAEAEDVFRALPRLETVHGRMQLAATRDSGAAVYVDYAHTPDAVATAI 367

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR+I + G GGDRD GKRP+MG+ A + AD+ IVTDDNPRSEDP  IRA+++
Sbjct: 368 KALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAAENADLVIVTDDNPRSEDPAAIRAQVL 427

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G P   E G+R EAI   +++L   D L+V GKGHET  IV +       D +  
Sbjct: 428 EGAPEATEVGDRAEAILRGVDLLQPGDALLVCGKGHETGQIVGD-TVYPFDDVEQA 482


>gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium kluyveri DSM 555]
 gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016]
 gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555]
 gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 485

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/499 (35%), Positives = 256/499 (51%), Gaps = 27/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++     ++I              I E+  DSR ++ G +FV I G   DGH +I
Sbjct: 1   MNLKDVLRGIDYKIIKGK-------NNLNIGEIQYDSRKVKTGDLFVCIAGYVTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A   GA AIV+S              +  ++ V +TRK L+L +S  Y    E   I+
Sbjct: 54  ESAFKNGAAAIVLSKKVDF-------IPDCTVIEVKDTRKALALMSSNYYDNPAEDMKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ I + +G     +G  S  I +    +  TTP  + L K    +
Sbjct: 107 GITGTNGKTTSTFMVKSILETAGYKVGVVGTISNYIGNKKIPSHRTTPESLELQKLFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +EASSH L   R+ G++     FTNL RDH+D+H+T + Y+ +K+ LF+  
Sbjct: 167 VDDGVDYCVMEASSHSLYLDRVYGVEFCQALFTNLTRDHLDFHKTFEEYYKSKIILFKNT 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +     ++I  DD Y + V + A        ++      +    +          IS EG
Sbjct: 227 VN----SVINIDDKYGERVYEDAKGKKL-TYAIDKNADLM-ADNLKIHSRGVNFNISYEG 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
                   +PG++ V NAL +AG+C+A GID   V + LE +  VPGR E V  +   G 
Sbjct: 281 NTKHINLNIPGKYNVMNALGSAGVCLAEGIDLNTVKKGLEDMPSVPGRCEIVTKSYNLGY 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE ILK  R  T G++I VFGCGGDRD  KRPIMG I    +D A+VT
Sbjct: 341 EVVVDYAHTPDGLENILKCAREFTKGKLISVFGCGGDRDSTKRPIMGNIGTKFSDFAVVT 400

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR E+P  I  +I+ GI    +I   NR EAI+ A+EM    DV+V+AGKGHE   I
Sbjct: 401 SDNPRGEEPMAIIKDILTGIKKNNYIVIENRKEAIKKAMEMAETGDVVVIAGKGHEDYQI 460

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       + +I+ EI+
Sbjct: 461 LKDRTIH-FDEREIVAEII 478


>gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 493

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 269/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL++     R+  I+ ++ DSR ++ G++F A+ G++  G  FI  A+  GA AI+  
Sbjct: 8   LSQLALTARGGRDPDISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGASAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +    +    S   ++VV++ R+ L+L A+  +G  P  ++AVTGT+GK+SV++FV+
Sbjct: 68  AEGARIAAAELAASQAALVVVEDPRQTLALTAALWFGAQPATMVAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    ++      TTP PI L + L+   + GVTH ++EASSHGL
Sbjct: 128 QIWTELGHDAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP +  A+I  DD    
Sbjct: 188 EQRRLDGVVLKAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMDDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  VL+VG     + L         Q +  S  GK +     L G FQ  N
Sbjct: 248 EMRAIAAARGQNVLTVGRGPCDLSLTNQRFDATGQDLLFSWRGKAYQARLDLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G     V E L  L  V GR +   T + G  ++VDY+HT +++   L+
Sbjct: 308 ILLACGLVIASGGAPERVFETLPHLGTVRGRMQLAATRANGAAVFVDYSHTPDAVATALR 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MGK A++ ADI I+TDDNPRSEDP  IRA ++ 
Sbjct: 368 ALRPHVMGRLVAIVGAGGDRDPYKRPLMGKAAVENADIVIITDDNPRSEDPALIRAAVMQ 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G PG  E G+R EAI   ++ L   D L++ GKGHET  +V +       D +  
Sbjct: 428 GAPGATEVGDRAEAILRGVDTLEPGDALLICGKGHETGQVVGDQVLP-FDDVEQA 481


>gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 493

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 187/475 (39%), Positives = 272/475 (57%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +         +  +S DSR +Q G +F A+ G+K  G  FI  A+  GA A++  
Sbjct: 8   LSSLGLTAKGGGNPPVTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +     A  ++   ++V D  R+ LS  A+  YG  P+ ++AVTGT+GK+SV++FV+
Sbjct: 68  AEGATLAADALAQAEVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GL++  +G T    ++      TTP PI L + L++ S+ G+TH ++EASSHGL
Sbjct: 128 QIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T  AYF+AK  LF  +LP++  A+I  DD    
Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGV 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +++  A   GC V++VG  G  +HL         Q +  S  GK +     L G FQ  N
Sbjct: 248 DMVAIARARGCEVITVGRDGGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AAGL IA G D A V + L  L  V GR +   T   GG ++VDYAHT +++   L+
Sbjct: 308 VLLAAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQ 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IRA ++ 
Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVME 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   I+ +   D L++AGKGHET   + + +     D +  
Sbjct: 428 GAPEATEVGDRAEAILRGIDAIGTGDALLIAGKGHETGQTIGD-DVLPFDDVEQA 481


>gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
 gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
          Length = 489

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 230/497 (46%), Positives = 313/497 (62%), Gaps = 14/497 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D+    FPEL   L     +    +I  +++DSR    G +FVA+ G K DG  ++
Sbjct: 1   MNLRDISGNAFPELKELLL---SEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A         V+           + ++ P+LVV + R +LSL ASR YGK P+ ++AV
Sbjct: 58  KDA---------VAKGAVAVVSGHAVEADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASFV+QI   +G ++ QIG T  I+   +D    TTP P+ L   L+ L+S
Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+ L A  FTNLGRDH+DYH T + Y  AKMRLF+ L+ 
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + +  A  AG  V +VG  G+++ LK+V    +KQ + +  +G  
Sbjct: 229 KGAPAVIFADDPWSDKAIGAAREAGLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+ +A  L+ LEKL    GR E VG    G   Y
Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  TSGRII VFGCGGDRD+GKRPIMG++A  L+DI IVTDDN
Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSED   IR+E++    G +E G+R EAIR A+ ML+  D L+VAGKGHE   IV +  
Sbjct: 409 PRSEDAATIRSEVMAAAAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGSVT 468

Query: 480 KKMSVDCDIIREILGLI 496
                D + +R  L  +
Sbjct: 469 LP-FSDHEQVRSALAEL 484


>gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium novyi NT]
 gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium novyi NT]
          Length = 483

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 169/501 (33%), Positives = 266/501 (53%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +L+     E++N          E +++ +  DSR I    +FVAI G   DGH FI
Sbjct: 1   MKVNELLKGLEYEILNG-------DLELEVSSIEYDSRKISENDVFVAIEGFNVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI +GA+ IV S           I+     + V+NTRK L++ AS LY    +   ++
Sbjct: 54  EKAINEGAKVIVCSKEIE-------IKKGITYIKVENTRKALAIMASNLYNNPSKDIKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I + +G S+  IG  S  I +       TTP  + L +    +
Sbjct: 107 GITGTNGKTTSTYMIKSILESAGHSTGLIGTISNFIGNEKIKAERTTPESLELHEMFKKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  +E SSH L   R+ G++   G FTNL +DH+D+H+T + Y+ AK+ +F+  
Sbjct: 167 KDKNIEYCVMEVSSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDN- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 +II  DD Y + ++    ++  ++     +   +  K +       +  +  + 
Sbjct: 226 ---AKNSIINIDDTYGERILNDVPDSSNKITYSTEKKADLFAKDIVNHARGAEFVLCYKD 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+      +PG + VYNAL +AG C++ GI    V + LE + V             G  
Sbjct: 283 KETHINLSIPGIYNVYNALCSAGACLSEGISMEDVKKGLESVVVPGRCENATKDYDLGFD 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + LE IL+  R  T GR+I VFGCGGDRD+ KRPIMGKI  D++DIAI+T 
Sbjct: 343 VIIDYAHTPDGLENILETARDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPR+E+P +I  +++ GI    +I   NR EAI+ AIE+  + DV+VVAGKGHE   I+
Sbjct: 403 DNPRTEEPSQIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKQGDVIVVAGKGHEDYQIL 462

Query: 476 TNGEKKM---SVDCDIIREIL 493
            +         +  DII+E+ 
Sbjct: 463 KDKTIHFDERELIADIIKELF 483


>gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
 gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
          Length = 487

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 206/502 (41%), Positives = 288/502 (57%), Gaps = 27/502 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L D++ +D                +  +  V++DSR +  G +F A+ G   DG  FIP
Sbjct: 5   RLSDILRRDLD-------------HDPFVTGVTADSRKVDKGTLFCALPGTAIDGRDFIP 51

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA+A+GA A++        D +A    ++ ++ V + R+  +L A   YG  P+  +AVT
Sbjct: 52  QALAKGAAAVLA-----PDDTAALESPDSLLVKVSDVRRAYALAAKAFYGSQPKICVAVT 106

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYLAKAL 174
           GT+GK+SVA+F +QI    G  S  +G    + S              TTP    +A+ L
Sbjct: 107 GTNGKTSVATFCRQIFSTLGKKSASMGTLGVVKSDIDGTETAVTGPGLTTPDAADMARHL 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S L++ GVTH+++EASSHG+DQ RLDG+ L A  FTNL +DH+DYH T +AY  AK+RLF
Sbjct: 167 SELAADGVTHLALEASSHGIDQRRLDGVSLTAAGFTNLTQDHLDYHATMEAYRCAKLRLF 226

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E LLP+   A++ AD             +G  V+SVG +G+ + +       + Q + I 
Sbjct: 227 ESLLPRGRTAVLNADSDAYNSFAAMCVLSGTSVMSVGERGRGLAMVGRDLTVDGQILFIE 286

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G+ ++   PL G FQ  NALVAAGLCIA G D   V+  L  L    GR E VG    
Sbjct: 287 HQGRKYETKLPLAGLFQASNALVAAGLCIAAGEDPGAVIHALSLLKGARGRLERVGAKRN 346

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +YVDYAHT + LE +LK +R  T G+++VVFGCGGDRD+GKRP MG IA  LAD AI
Sbjct: 347 AAEVYVDYAHTPDGLETVLKALRPHTQGKLVVVFGCGGDRDKGKRPQMGAIAARLADRAI 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           VTDDNPRSEDP  IRAE++ G+    +E G+R +AI  A+  L   DVLVVAGKGHE   
Sbjct: 407 VTDDNPRSEDPATIRAEVLAGMSSETVEIGDRKKAILEAVSGLKTGDVLVVAGKGHEQGQ 466

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
           I+ +       D  ++++ L +
Sbjct: 467 IIGDKVLP-FDDVAVVQQALKV 487


>gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 485

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 172/500 (34%), Positives = 267/500 (53%), Gaps = 29/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+  L+ K+  E+++          E +I+ ++ DSR ++ G +FVAI G K DGH FI
Sbjct: 1   MKVDQLL-KNLSEIVD-----VKGSTEVEISSIAYDSRKVKKGGLFVAIKGFKLDGHDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAI  GA  ++     +L         +   + V N+RK LS  +S  +GK  E +  +
Sbjct: 55  GQAINNGAVVVIGEKEINL-------PEDVLYIKVKNSRKALSEASSLFFGKPAERLNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I   +G S+  +G     I         TTP  + L +  S +
Sbjct: 108 GVTGTNGKTTTTYLIKAILDEAGYSTGVVGTIGIRIKERLLPAERTTPESLELNEIFSEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +V++E SSH L  HR+D +K   G FTNL +DH+D+H + + Y+ +K +LF+  
Sbjct: 168 VKEGVEYVTMEVSSHSLKLHRVDHVKFEVGVFTNLTQDHLDFHVSFEDYYASKKKLFD-- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
                 A+I  DD   + +          V++   +    +  + V    +     +   
Sbjct: 226 --LSRKAVINVDDESGERLCSEL---NIPVITYAIEKNADVRAENVVIGSDGVSYEVCAG 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+     + +PG F VYN+L A   C+++GID   + + LEK+  VPGRFE V    +  
Sbjct: 281 GERRKITYKVPGRFSVYNSLAAISACLSLGIDLETMAKALEKVRGVPGRFEPVD-EGQDF 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE +L  ++T   GRII VFG GGDRD+GKRP+MGK+  + +D  I+T
Sbjct: 340 TVIVDYAHTPDGLENVLNTVKTFARGRIITVFGAGGDRDRGKRPLMGKVVSERSDYFIIT 399

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP+ I  +I  G+     + +  +R EAIR AIEM    DV+++AGKGHE   
Sbjct: 400 SDNPRTEDPQAIIDDIEKGVTERSNYEKIIDRREAIRRAIEMALPGDVVLIAGKGHEDYQ 459

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       D ++ RE L
Sbjct: 460 IIGDKVLH-FDDREVAREFL 478


>gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
 gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
          Length = 485

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 216/500 (43%), Positives = 285/500 (57%), Gaps = 29/500 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+ +D                +  I  V+SDSR +  G +FVA+ G   DG  FIPQ
Sbjct: 6   LSDLLRRDVA-------------SDPIITGVTSDSRKVAPGALFVALPGTAADGRAFIPQ 52

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVT 121
           A+AQGA A++  +         T  S  P+LV   + R+  ++ A   YG  P   +AVT
Sbjct: 53  ALAQGAAAVLAPTD--------TPDSAAPVLVTSGDVRRAYAIAARGFYGAQPRTCVAVT 104

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ------DNRLTTPSPIYLAKALS 175
           GT+GK+SVA+F +QI    G  S  +G    +              LT+P     A+ ++
Sbjct: 105 GTNGKTSVAAFCRQIWAGLGHKSASMGTLGVVGQKGDRTYALTGPGLTSPDAAEAARLMA 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L+++ VTHV+VEASSHG+DQ RLDG+ L A +FTNL +DH+DYH T   Y  AKMRLFE
Sbjct: 165 ELAAKDVTHVAVEASSHGIDQRRLDGVALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFE 224

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LLP+   A++ AD          +  AG  V+ VG +G+ + L    A    Q++T+ V
Sbjct: 225 ALLPRGRTAVLNADSDAYSAFAAASIMAGLGVMGVGERGRDLALIGRQATPEGQRLTLDV 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G   D L PL G FQ  NALVAAGLCIA G     V+  LE L    GR + +   +  
Sbjct: 285 RGDVRDILLPLAGAFQASNALVAAGLCIAAGDRPDEVISALEGLTGAQGRLQRIAAETGR 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G +YVDYAHT + LE +L  +R   +GR+IVVFG GGDRD+GKRP+MG+IA  LAD+AIV
Sbjct: 345 GEVYVDYAHTPDGLETVLTALRPHATGRLIVVFGAGGDRDRGKRPLMGEIAGRLADVAIV 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA++  G P  +E G+R  AI  AIEM+   DV+V+AGKGHE   IV
Sbjct: 405 TDDNPRSEDPASIRAQVRAGCPEALEIGDRRAAIEAAIEMMRDGDVVVIAGKGHEQGQIV 464

Query: 476 TNGEKKMSVDCDIIREILGL 495
             G      D  +  E L L
Sbjct: 465 -GGTTHPFDDATVASEALSL 483


>gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
 gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
          Length = 483

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 172/498 (34%), Positives = 266/498 (53%), Gaps = 24/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +L+     E++N          E  IN +  DSR I    +FVAI G K DGH FI
Sbjct: 1   MKVNELLKGLNYEILNG-------TLELDINAIQYDSRKISESDVFVAIEGFKVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI++GA+ IV S           I      + V NTRK L++ AS LY    +   ++
Sbjct: 54  EKAISEGAKVIVCSKEVE-------IHEEITYIKVQNTRKALAIMASNLYNNPSKDIKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I + +G S+  IG  S  I +    +  TTP  + L +    +
Sbjct: 107 GITGTNGKTTSTYMIKSILELAGHSTGLIGTISNFIGNEKIKSERTTPESLELHEMFKKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  +E SSH L   R+ G++   G FTNL +DH+D+H+T + Y+ AK+ +F+  
Sbjct: 167 KDKNIEYCVMEVSSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDN- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 +II  DD Y + V+    ++  ++     +   +  K +       +  +  + 
Sbjct: 226 ---AKNSIINIDDTYGERVLNDVPDSSNKITYSTEKKADLFAKDIVNYARGAEFILCYKS 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++      +PG + VYNAL +AG C++ GI    V + LE + V             G  
Sbjct: 283 EETHINLSIPGIYNVYNALCSAGACLSEGISMEDVKKGLESVVVPGRCENATKEYDLGFD 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + LE IL+  R  T GR+I VFGCGGDRD+ KRPIMGKI  D++DIAIVT 
Sbjct: 343 VIIDYAHTPDGLENILETARDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIVTS 402

Query: 418 DNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPR+E+P +I  +++ GI    +I   NR EAI+ AIE+  K DV+VVAGKGHE   I+
Sbjct: 403 DNPRTEEPSEIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKKGDVIVVAGKGHEDYQIL 462

Query: 476 TNGEKKMSVDCDIIREIL 493
            +       + ++I +I+
Sbjct: 463 KDKTIH-FDEREVIADII 479


>gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
 gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
          Length = 487

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 210/505 (41%), Positives = 289/505 (57%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L D++ +D                +  +  V++DSR +  G +F A+ G   DG  FI
Sbjct: 4   LRLSDILRRDLD-------------VDPVVTGVTADSRKVGPGTLFCALPGTARDGREFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA++QGA A++            T+ + + IL   + R+  +L A   YG  P+  +A+
Sbjct: 51  PQALSQGAAAVLAPED--------TLATASNILTTYDVRRAYALAAKAFYGAQPKTCVAI 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYLAKAL 174
           TGT+GK+SVA+F +Q+    G  S  +G    ++             LTTP    +A+ L
Sbjct: 103 TGTNGKTSVATFCRQMFAHMGYHSASVGTLGIVTQNGAAEHAITPPGLTTPDAADIAEHL 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L+  GVTH+++EASSHG+DQ RLDG+ L A  FTNL +DH+DYH T +AY  AK+RLF
Sbjct: 163 ASLARDGVTHLALEASSHGIDQRRLDGVTLTAAGFTNLTQDHLDYHATMEAYRAAKLRLF 222

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E+LLP+   A++ AD          A  AG  +LSVG +G+ + L       + Q + + 
Sbjct: 223 EQLLPRGRVAVLNADSDAYNAFAASAITAGASLLSVGERGQHLTLTHRDLTVDGQILYLE 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G+ F+    L G FQ  NALVAAGLC+A G  +  VLE L  L    GR E VG+   
Sbjct: 283 HQGRKFEVKLKLAGLFQASNALVAAGLCLAAGQKAEPVLEALTHLTGARGRLERVGSTGN 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  IYVDYAHT + LE +LK +R  T GR++ VFGCGGDRD+GKRP MG IA  LAD  I
Sbjct: 343 GAEIYVDYAHTPDGLETVLKALRPHTQGRLVCVFGCGGDRDRGKRPQMGAIAERLADRVI 402

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VTDDNPRSE+P  IRAEI+ G+ G      +E G+R +AI  A+  L   DVLVVAGKGH
Sbjct: 403 VTDDNPRSEEPASIRAEIMAGLAGTQSSNVLEIGDRRQAIFEAVASLKTGDVLVVAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E   IV  G+     D  ++ E L 
Sbjct: 463 EQGQIVA-GKVLPFDDAGVVLEALN 486


>gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 485

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 195/486 (40%), Positives = 283/486 (58%), Gaps = 11/486 (2%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   +L+ +    P      ++  ++ DSR ++ G +F A+ G K DG  FIP AI +GA
Sbjct: 3   RTLADLLPETLSAPQGADGVEVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             I+     +            P++  ++  + LS  A+  Y + P  I A+TGT+GKSS
Sbjct: 63  VCILAPKGVTAP---------VPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSS 113

Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
              F++QI  ++G+ +  +G    T +S   D   TTP  I L K+L  L+ +GVTH+++
Sbjct: 114 TVEFLRQIWAKAGIEAAALGTLGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAM 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL Q R+DG++L    FTNL +DH+DYH   + YF++KMRLF  L P  +PA+I 
Sbjct: 174 EASSHGLKQRRMDGVRLSLVGFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVIN 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D  +S+ V + A +AG   + +G++G+ + + ++      Q V  S +G++ +   PL 
Sbjct: 234 MDSDWSQRVAQAAQSAGLSPVEIGWRGRDLTVHEITPHPASQMVRFSWKGEEREVDLPLI 293

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEFQ  NAL AA + IA G+      E + +L  V GR + VGT   G  + +DYAHT +
Sbjct: 294 GEFQAANALGAAAMAIASGVSPDAAFEAMGQLTGVAGRLQTVGTTKDGAPVLLDYAHTPD 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L+ +L+  R  T GRII+VFG GGDRD  KR  MG+IA  L+D+AIVTDDNPRSEDP  
Sbjct: 354 GLDKLLRAARPHTQGRIILVFGAGGDRDPTKRAPMGEIAARLSDVAIVTDDNPRSEDPAG 413

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           IR  I+   PG  E G+R  AIR  IEML   DVL+VAGKGHET  I+ +       + +
Sbjct: 414 IRKTILAACPGAQEIGDREAAIRAGIEMLKAGDVLLVAGKGHETGQILAD-RIIPFDETE 472

Query: 488 IIREIL 493
           I+  IL
Sbjct: 473 IVTRIL 478


>gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 495

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 190/476 (39%), Positives = 265/476 (55%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +     ++ +I  +S DSR ++ G +F A+ G+K  G  FI  A+   A AI+  
Sbjct: 9   LSALGLRAKGGQDVEITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYALRMEAAAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +         S T ++V ++ R  L+  A+  +G  PE ++AVTGT+GK+SVASF +
Sbjct: 69  REGARIAADELAASKTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGTNGKTSVASFTR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GL +  IG T    +FA  +  TTP PI L + L+ +S  GVTH ++EASSHGL
Sbjct: 129 QIWTELGLMAANIGTTGVEGAFAAPSPHTTPEPITLHRLLAEMSQAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RL+G+ L A  FTN  +DH+DYH +   YF AK RLF  +LP +  A++  DD   +
Sbjct: 189 DQRRLEGVHLAAAGFTNFTQDHLDYHASFDDYFRAKARLFNRVLPDDGVAVLNVDDPRGR 248

Query: 255 EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           E+ + A   G  V+S+G      + L         QQ+     G+       L G FQ  
Sbjct: 249 ELEEIAQERGQEVISIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRPQTVQLDLIGGFQAE 308

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N LVAAGL IA G D   V      L  V GR +       G  I+VDYAHT ++L   L
Sbjct: 309 NVLVAAGLAIASGSDPDEVFATFPALTTVRGRMQLAAKRDNGAAIFVDYAHTPDALATAL 368

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    G+++VVFG GGDRD  KR +MGK A D AD+ IVTDDNPR+EDP  IRA ++
Sbjct: 369 EALRPHVMGKLVVVFGAGGDRDTTKRKLMGKAAADYADVVIVTDDNPRTEDPAAIRAMVL 428

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G P   E G+R EAI   ++ML+  D L++AGKGHET  IV + +     D +  
Sbjct: 429 EGCPDANEYGDRAEAILRGVDMLDPGDALLIAGKGHETGQIVGD-DVLPFDDAEQA 483


>gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 482

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/500 (34%), Positives = 261/500 (52%), Gaps = 29/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+        +++N L+   ++  +   I E+  DSR +++G +FV I G   DGH +
Sbjct: 1   MKLK--------KVMNGLTYEVVKGNDDLNIGEIQYDSREVKSGDVFVCIKGYVTDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +A   GA AIV+S              +  ++ V +TRK L++ +S  Y    + +  
Sbjct: 53  IDKAYKNGAAAIVISEEVEN-------VPDCTVIKVKDTRKALAIISSNYYDNPSKKMKI 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    ++ I + +G     +G  +  I      +  TTP  + L K    
Sbjct: 106 IGITGTNGKTTSTFMMKSILETAGYKVGLVGTIANYIGEKKIPSHRTTPESLELQKLFKQ 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV +  +E SSH L   R  G++     FTNL RDH+D+H+T + Y+ AK+ LF+ 
Sbjct: 166 MVDEGVQYCVMEVSSHSLYLDRAYGVRFSEAIFTNLTRDHLDFHKTFENYYKAKLILFKN 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +     ++I  DD Y  +V + A        ++  +        +          I+  
Sbjct: 226 TIN----SVINIDDKYGDKVYEDALGTKI-TYAINKEADLK-ANDLNIHSRGANFNITYR 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
           G+       +PG++ V NAL + G C+  GI   +V + LE ++ VPGR E V      G
Sbjct: 280 GQTAHINLNIPGKYNVMNALGSIGACLCEGISLEVVKKGLESMNAVPGRCEIVTKGYNLG 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + LE ILK  R  T+GR+I VFGCGGDRD  KRPIMGKI  +L+D A++
Sbjct: 340 YEVIVDYAHTPDGLENILKTAREFTTGRLIAVFGCGGDRDNTKRPIMGKIGTELSDFAVI 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPR E+P  I  EI++G+    +    NR EAI+ AI M  K DV+VVAGKGHE   
Sbjct: 400 TSDNPRGEEPRAIIDEIVNGVEKDDYKVVENRKEAIKEAIHMAQKGDVIVVAGKGHEDYQ 459

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       + +II EIL
Sbjct: 460 ILKDKTIH-FDEREIIAEIL 478


>gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 488

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/503 (33%), Positives = 262/503 (52%), Gaps = 33/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L D++          ++   ++   +  +  +  DSR+ + G +FVAI G K DG  +
Sbjct: 1   MRLVDILK--------DVNYTTVKGNIDVDVKGICYDSRNSKEGSLFVAIKGFKFDGADY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  A+ +GA AIVV    S       I  +  ++ V+N RK L+  AS  YG   + +  
Sbjct: 53  INDAVERGAVAIVVEREVS-------IDKDITVIKVENARKSLAKIASNYYGDPSKQLFM 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+SV   ++ I +        IG     I         TTP  + L + L  
Sbjct: 106 IGVTGTNGKTSVTYMIKSILESQNNKVGLIGTIHNMIGDKVYPTERTTPESLDLQRYLRL 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV +V +E SSH L  +R+D  K     FTNL +DH+D+H+T   Y NAK +LF  
Sbjct: 166 MVDEGVKYVVMEVSSHSLALNRVDECKFDIAVFTNLTQDHLDFHKTMDEYANAKAKLFR- 224

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV 295
               ++  +I  DD YS  +++   N+  +V++ G +   +I  K +       + T+ +
Sbjct: 225 --MAKTACVINIDDDYSSYMIE---NSNAKVVTYGIKDYAYIMAKDIKNDIKGAKFTVQI 279

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E    +    +PG F VYN+L A  +   +GI    V   L+ +  + GRFE +  +   
Sbjct: 280 EDIKSEIALKIPGLFSVYNSLAAISVAFILGIPLQSVKMALKDVK-IKGRFEVLDLDV-P 337

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAHT + LE ++K      +G+ I++FGCGGDRD+GKRP MG++A   AD  I+
Sbjct: 338 YNVVIDYAHTPDGLENLMKAFGEYNTGKKILLFGCGGDRDKGKRPKMGEVAGKYADFVII 397

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPRSE+P KI  EI  GI      +    +R EAI+ A+ +    DV+++AGKGHET
Sbjct: 398 TSDNPRSEEPIKIIQEIEEGIKNTKCPYTIIEDRKEAIKYALSIAKDNDVVILAGKGHET 457

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             ++ +       + DI+R+IL 
Sbjct: 458 YQVLKDKVID-FDERDIVRDILN 479


>gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter sp. X514]
 gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X514]
 gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 483

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 261/501 (52%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I+ V  DSR  +  ++F+AI G K DG  ++
Sbjct: 1   MKLIDILKGVKCEIKGD--------PNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V                    ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVADREIKE-------YPGITTVLVEDARATMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G     I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  +R+D  +     FTNL +DH+D+HQ  + Y   K +LF+  
Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFK-- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +  ++I  DD YS  +++   ++  +VL+ G +   ++  K +    +  +  + +E
Sbjct: 224 -MAKRASVINIDDKYSSMMIE---SSKAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIE 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K  +    +PG F VYNAL A  +   +GI    V E L ++  V GRFE V T  +  
Sbjct: 280 DKKEEMSLKIPGLFNVYNALAAITVADFLGISLRSVREALSQVT-VKGRFEPVET-GKDF 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++DYAHT + ++ I++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T
Sbjct: 338 YVFIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILT 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSEDP +I ++I  GI      ++   NR EAIR A+    K DV+++AGKGHET 
Sbjct: 398 SDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKGHETY 457

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ N       + +I++EIL
Sbjct: 458 QIIGNKVIP-FDEREIVKEIL 477


>gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 483

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 261/501 (52%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I+ V  DSR  +  ++F+AI G K DG  ++
Sbjct: 1   MKLIDILKGVKCEIKGD--------PNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V                    ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVADREIKE-------YPGITTVLVEDARATMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G     I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  +R+D  +     FTNL +DH+D+HQ  + Y   K +LF+  
Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFK-- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +  ++I  DD YS  +++   ++  +VL+ G +   ++  K +    +  +  + +E
Sbjct: 224 -MAKRASVINIDDKYSSMMIE---SSKAKVLTYGVKDFAYVMAKDIRNSLDGVKFKVQIE 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K  +    +PG F VYNAL A  +   +GI    V E L ++  V GRFE V T  +  
Sbjct: 280 DKKEEMSLKIPGLFNVYNALAAITVADFLGISLRSVREALSQVT-VKGRFEPVET-GKDF 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++DYAHT + ++ I++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T
Sbjct: 338 YVFIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILT 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSEDP +I ++I  GI      ++   NR EAIR A+    K DV+++AGKGHET 
Sbjct: 398 SDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKGHETY 457

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ N       + +I++EIL
Sbjct: 458 QIIGNKVIP-FDEREIVKEIL 477


>gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
 gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
          Length = 493

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 188/475 (39%), Positives = 272/475 (57%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +         I  +S DSR +Q G +F A+ G+K  G  FI  A+  GA A++  
Sbjct: 8   LSSLGLTAKGGGNPPIAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +     A  +++  ++V D  R+ LS  A+  YG  P+ ++AVTGT+GK+SV++FV+
Sbjct: 68  AEGAKLAADALAQADVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GL++  +G T    ++      TTP PI L + L+  S+ G+TH ++EASSHGL
Sbjct: 128 QIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T  AYF+AK  LF  +LP++  A+I  DD    
Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGV 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +++  A   GC V++VG  G  +HL         Q +  S  GK +     L G FQ  N
Sbjct: 248 DMVAIARARGCEVITVGRDGGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AAGL IA G D A V + L  L  V GR +   T   GG ++VDYAHT +++   L+
Sbjct: 308 VLLAAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQ 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IRA ++ 
Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVME 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   I+ +   D L++AGKGHET   + + +     D +  
Sbjct: 428 GAPEATEVGDRAEAILRGIDAIGTGDALLIAGKGHETGQTIGD-DVLPFDDVEQA 481


>gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
 gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
          Length = 486

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 243/501 (48%), Gaps = 27/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++     E I  LS+  +   + ++  V  DSR ++ G +F+ I G   DGH +I
Sbjct: 1   MKLNHIL-----EGIEVLSV--VGNEDVEVLNVEYDSRKVEEGTLFICIKGFVSDGHRYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A  +GA   ++      ++       +   + V++TRK ++  A+       +   ++
Sbjct: 54  DSAYEKGARVFLIQDDVDFKE-------DCTYVKVEDTRKTMAKVAANFCEHPADKFDVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+ +F+ +I +        IG            +  TTP  + L K    +
Sbjct: 107 GVTGTNGKTSITTFINEILRNCNKKVGLIGTIKIFDGDNEVPSNSTTPESVDLQKIFKRM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G    ++E SSH L+  R+D      G FTNL  DH+D+H+T + Y  AK +LF   
Sbjct: 167 VDNGCDCCAMEVSSHSLELSRVDDTNFKIGIFTNLTPDHLDFHKTLENYRKAKEKLFH-- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
                  II  DD   +++ +          + G +       K + +  +    T+   
Sbjct: 225 -KTTQANIINVDDEGGRKIYEAIKGLDTPCYTYGIEHDADFTAKNIKSDASGVAYTLVTP 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               D   P+PG+F VYN L     C  +GID    L  L     V GRFE V  N +G 
Sbjct: 284 NHTEDIFIPVPGKFTVYNTLAVIAACEMLGIDKEDYLNSLRNTGGVAGRFETVP-NDKGI 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE +L   R    G +I VFGCGGDRD  KRP+MG I   L+D  I+T
Sbjct: 343 SVIVDYAHTPDALENVLNTAREFVEGDLIAVFGCGGDRDSEKRPLMGGIGQRLSDRCIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +DNPR+EDPE I  +I+ G+      +    +R EAI+ AIE   K DV+++AGKGHE  
Sbjct: 403 NDNPRTEDPELIIKDILAGLDESNENYKVVMDRKEAIKEAIESAKKGDVILIAGKGHENY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+    K    D ++ RE+L
Sbjct: 463 QILGT-VKHHFDDKEVAREVL 482


>gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
 gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
          Length = 496

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/508 (31%), Positives = 256/508 (50%), Gaps = 29/508 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +  K   +++  L    ++     +I +V++DSR ++AG +F+A+ G   DGH ++ +AI
Sbjct: 1   MYMKHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTG 122
             GA A++VS           +  +  ++ V++TR  + +     +        ++ VTG
Sbjct: 61  EAGAVAVLVSKPVD-------VSGDVCVITVEDTRAAMMVCVPYFFDYPANSMRMIGVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++ +  ++ I +  G     IG     I   +     TTP  + L   L  +  +G
Sbjct: 114 TNGKTTTSHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEG 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---- 237
           VT+  +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++    
Sbjct: 174 VTYCVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPN 233

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
            +     A+I  DDAY   V+++       +++    G   ++   V       + T+S 
Sbjct: 234 QVKSGKGAVINIDDAYGHRVVEKTTAP---IITYSIDGSGTLNAHDVDMTPKSSRYTVSY 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G D+       G F VYN L A G C+  GI    + + L+    VPGRFE +    + 
Sbjct: 291 DGHDYTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQP 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  V
Sbjct: 350 FAVVVDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYV 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T DNPR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKG
Sbjct: 410 TSDNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAQPGDIVLIAGKG 469

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLI 496
           HE   I+ +       D +  R  L  I
Sbjct: 470 HEDYQILKDKTIH-FDDREEARAALKEI 496


>gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. WCH70]
 gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70]
          Length = 490

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/504 (32%), Positives = 253/504 (50%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+       ++  + +        I  +  DSR ++ G +F+ I G   DGH F 
Sbjct: 1   MKLQTLLS-----YLHDFTTYV--GENPTITSIEMDSRQVKNGALFICIKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+  GA A++      +         + P++VV ++R+ +++ A   YG+    +  +
Sbjct: 54  KQAVENGAVAVIAERPLDV---------DVPVIVVRDSRRAMAMLADAFYGQPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I +++   +  IG     I       + TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTHIIEHIARKANKKTGLIGTVHIKIGDHTYPTKNTTPESLLLQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV    +E SSH L   R+ G       FTNL +DH+DYH T + Y NAK  LF +L
Sbjct: 165 VDEGVDVAVMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 238 LPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
             +        A++  DD  SK      H     V++ G +    I  KK+  + +    
Sbjct: 225 GNRYDHERPKFAVLNNDDPASKY---YKHMTAASVITYGIETDSDIMAKKIDIVPSGMSF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L A   C+  GI   +++E +E++  V GRFE V  
Sbjct: 282 DLITPNGTVRVKTRLIGLFNVYNLLAAVSACLVSGIPLPVIVEAIEEISGVAGRFETVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK IR     ++ VV GCGGDRD+ KRP+M K A+  AD
Sbjct: 341 EGQNFTVIVDYAHTPDSLENVLKTIRQFAQKKVYVVVGCGGDRDRTKRPLMAKTAVKYAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +AI T DNPRSEDPE+I  ++  G+PG  ++   +R EAI  AIE   + D++++AGKGH
Sbjct: 401 VAIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEGDIILIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+ +       D  + RE +
Sbjct: 461 ETYQIIGDRVID-FDDRLVAREAI 483


>gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
          Length = 483

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/499 (33%), Positives = 263/499 (52%), Gaps = 27/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ ++ +   EL+           + +I E+  DSR++++G +FV I G   DGH ++
Sbjct: 1   MNLKKILKEIKYELLKGND-------DLEIREIQYDSRNVKSGDLFVCIEGYSTDGHKYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A++ GA A++ S             +   ++  ++TRK L+L ++  Y    + +  +
Sbjct: 54  SSAVSNGAAAVICSKDIEN-------LTECTVIKTEDTRKVLALASANYYDHPSDKLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I +  G     +G  +  +         TTP  + L K  + +
Sbjct: 107 GITGTNGKTTSTFMMKSILEAQGYKVGLLGTIANYVGDKKIPAHRTTPESLELQKLFAEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +  +E SSH L   R+ G+K     FTNL RDH+D+H+T + Y+NAK+ LF+  
Sbjct: 167 VEEGVNYCIMEVSSHSLYLDRVYGVKFCQAIFTNLTRDHLDFHKTFENYYNAKLILFKNT 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L     +++  DD Y + V + +     +      +   +    +       +  I+ + 
Sbjct: 227 LS----SVVNIDDEYGERVYEDSEGK--KTSYAIDKVADVKGSNLHMHSRGVEFDITYKN 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           +       +PG++ V NAL +A  C+  G+  A V E LE +  VPGR E V  N   G 
Sbjct: 281 ETQHINLNIPGKYNVMNALGSAAACLGEGMSLATVKEGLEAMLCVPGRCEIVTKNYDLGY 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE ILK  R  T G++I VFGCGGDRD  KRPIMGKI  +L+D A++T
Sbjct: 341 EVIVDYAHTPDGLENILKTAREFTKGKLISVFGCGGDRDNTKRPIMGKIGTELSDKAVIT 400

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+EDP  I  E++ G+    +I   NR EAI+ A+EM  K DV+VVAGKGHE   I
Sbjct: 401 SDNPRTEDPMSIIKEVVAGVEKDNYIVVENRREAIKKAMEMAKKDDVIVVAGKGHEDYQI 460

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       + ++I EI+
Sbjct: 461 LKDKTIH-FDEREVIAEII 478


>gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 484

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 168/500 (33%), Positives = 273/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++     +L+           +++I+ V+ DSR ++   +F+ I G   DGH +I
Sbjct: 1   MNLKDILKGIDYKLV-------QGSLDKEISSVNYDSRKVKKSDVFICIKGYATDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  I+      +QD    +  N  ++ V +TRK L+L     Y    + +  +
Sbjct: 54  QKAIENGASVII------MQDEIEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G     IG  +  I +       TTP  + L +  + +
Sbjct: 108 GITGTNGKTTTAFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +  +E SSH L+  R+ G+    G FTNL RDH+D+H+T + Y+N+K +LF+  
Sbjct: 168 VNKGVEYCVMEVSSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
               +  II  DD Y K+V+K  +    + +      +  + K        + ++  V  
Sbjct: 227 ---SNIRIINNDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNL 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
            K+ +F+  +PGE+ +YNAL A G C  + I    +   + K+  VPGR E   TN    
Sbjct: 284 EKEEEFILSIPGEYNIYNALGAIGACYKLNIPMEAIKNGINKVI-VPGRCERTATNYNLP 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +DYAHT + L+ IL+  R  T GR+I +FGCGGDRD+ KRP MGKI  D+ADIAIV
Sbjct: 343 YDIIIDYAHTPDGLKNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIV 402

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSE+P +I  +I+ GI    +    NR +AI+ A+++  + DV+V+AGKGHET  
Sbjct: 403 TSDNPRSEEPMRIIDDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       + +++++IL
Sbjct: 463 ILKDKTIH-FDEREVVKQIL 481


>gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 493

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 270/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +         I  ++ DSR ++ G +F A+ G++  G  FI  A+  GA A++  
Sbjct: 8   LSSLGLTARAGANPMITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +     A   SN  ++V D+ R+ L+  A+  +G  P  ++AVTGT+GK+SV++FV+
Sbjct: 68  AEGAKIAAEALAGSNAALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GL +  +G T    ++A     TTP PI L + L+  +  G+TH ++EASSHGL
Sbjct: 128 QIWVEMGLPAVNLGTTGVEGAWAAPLAHTTPEPITLHRTLAEAARNGITHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP++  A++  DD    
Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVNIDDEKGI 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   GC V++VG  G  +HL+        Q +  +  GK +     L G FQ  N
Sbjct: 248 DIAAIARARGCEVITVGRDGGDLHLQGQRFDATGQDLRFTWRGKTYQKRLNLIGGFQGDN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AAGL IA G D+  V + L  L  V GR +   T   G  ++VDYAHT +++   L 
Sbjct: 308 VLLAAGLVIACGADAQEVFDTLPHLTTVRGRMQLAATRDNGAAVFVDYAHTPDAVATALS 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD+ KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA ++ 
Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDRVKRPLMGQAAAENADMVIVTDDNPRSEDPASIRAAVLS 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   ++ L   D L++AGKGHET   V + +     D +  
Sbjct: 428 GAPDAWEVGDRAEAILRGVDALEPGDALLIAGKGHETGQTVGD-DVLPFDDVEQA 481


>gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 484

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 172/500 (34%), Positives = 274/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++     +L+           +++I+ V+ DSR ++   IF+ I G   DGH +I
Sbjct: 1   MNLKDILKGIDYKLV-------QGSLDKEISSVNYDSRKVKKSDIFICIKGYATDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  I+      +QD    +  N  ++ V +TRK L+L     Y    + +  +
Sbjct: 54  QKAIENGASVII------MQDDIEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G     IG  +  I +       TTP  + L +  + +
Sbjct: 108 GITGTNGKTTTAFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +  +E SSH L+  R+ G+    G FTNL RDH+D+H+T + Y+N+K +LF+  
Sbjct: 168 VNKGVEYCVMEVSSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
               +  II  DD Y K+V+K  +    + +      +  + K        + ++  V  
Sbjct: 227 ---SNIRIINNDDNYGKQVIKDLNKLKAKNIYEYSIREDSNFKAFDEKMGSKNISFKVNL 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
            K+ +F+  +PGE+ +YNAL A G C  + I    + E + K+  VPGR E   TN    
Sbjct: 284 EKEEEFILSIPGEYNIYNALGAIGACYKLNIPMEAIREGINKVI-VPGRCERTATNYNLP 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +DYAHT + L+ IL+  R  T GR+I +FGCGGDRD+ KRP MGKI  D+ADIAIV
Sbjct: 343 YDIIIDYAHTPDGLQNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIV 402

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSE+P KI  +I+ GI    +    NR +AI+ A+++  + DV+V+AGKGHET  
Sbjct: 403 TSDNPRSEEPMKIIEDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       + +I+++IL
Sbjct: 463 ILKDKTIH-FDEREIVKQIL 481


>gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
 gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
          Length = 485

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/500 (33%), Positives = 265/500 (53%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++ K    ++N          E  I  +  DSR+I+   IF AI G   DGH FI
Sbjct: 1   MKLKEVLKKLEYNILNG-------NIEIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ IV    +  ++       +   + V N+RK L++ AS  YG   + +  +
Sbjct: 54  ESAIEKGAKVIVFDKGFENENM----YKDITFIKVKNSRKALAVAASNYYGNPKDKLKLI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I + +G     +G     I       + TTP  + + K    +
Sbjct: 110 GVTGTNGKTTSTFMIKSILEEAGFKVGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L   R+ GI+   G FTNL +DH+D+H+T + Y+N+K+ LF+  
Sbjct: 170 VDSGVDYCVMEVSSHSLYLDRVYGIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNS 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           +     ++I  DD Y + ++K       +  +   +    +  + V       + T+  +
Sbjct: 230 IN----SVINIDDNYGERILKEIEE---KTFTYSIKKYSDLKAESVRLHSRGGEFTVDFK 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
           G        +PGE+ V NAL +   C+  GI   ++   LEKL  VPGR E V      G
Sbjct: 283 GNKEKINIHIPGEYNVSNALGSILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLG 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + L+ +L+  R  T G++I V+GCGGDRD+ KRPIMG+I  +L+D+AI+
Sbjct: 343 YDVIVDYAHTPDGLDNVLRTARDFTKGKLISVYGCGGDRDRAKRPIMGRIGTELSDLAIL 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPR+E+P  I  +I+ G+    +I   +R EAI+ A+ +  K DV+VVAGKGHE   
Sbjct: 403 TSDNPRTEEPFSIIDDIVKGVTKDNYIIVQSRREAIKKAMTIAKKDDVIVVAGKGHEDYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       + ++I+EI+
Sbjct: 463 ILKDKTIH-FDEREVIKEII 481


>gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 493

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 179/475 (37%), Positives = 263/475 (55%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL++      + +I  ++ DSR ++ G++F A+ G +  G  FI  A+  GA AI+  
Sbjct: 8   LSQLALTARGGADPEIAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++VV + R+ L+  A+  +G  P  ++AVTGT+GK+S+++FV+
Sbjct: 68  AEGARIAADELAASDAALVVVQDPRQTLAYTAALWFGAQPRTMVAVTGTNGKTSISTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    ++      TTP PI L + L+  +  GVTH ++EASSHGL
Sbjct: 128 QIWTELGHMAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  F+N  +DH+DYH T +AYF AK  LF+ +L ++  A+I  DD    
Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +   A   G  VL+VG     + L         Q +  +  GK F     L G FQ  N
Sbjct: 248 AIRDIAQARGQTVLTVGSGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G ++  V + L  L  V GR +   T S G  ++VDYAHT +++   L+
Sbjct: 308 VLLACGLVIASGDEAEHVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALQ 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MG+ A + ADI  VTDDNPRSEDP  IRA ++ 
Sbjct: 368 ALRPHVMGRLIAIVGAGGDRDSTKRPLMGRAAAENADIVFVTDDNPRSEDPAAIRAAVMA 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E  +R EAI   I+ L   D L++AGKGHET  IV +       D +  
Sbjct: 428 GAPDATEVADRAEAILRGIDALQPGDALLIAGKGHETGQIVGDQVLP-FDDVEQA 481


>gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
 gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
          Length = 485

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/503 (33%), Positives = 251/503 (49%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+          L    M     +I E+  D+R +    +F+ I G   DGH F 
Sbjct: 1   MKLHTLL--------EALPFVKMPAVNPEITELVQDNRLVTKNSLFICIKGYTVDGHKFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A  +GA AI+      +         + P+++V NT++ ++L A R YG+      ++
Sbjct: 53  VDAAKRGAAAILAEKPVDV---------DIPVIIVRNTKRAMALLADRFYGQPSRKFRLV 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  +++I + +G ++  IG     I     + + TTP  + L K    +
Sbjct: 104 GITGTNGKTTTSHIIEKIYRDAGRTTGLIGTMYMKIGDETLETKNTTPDSLTLQKTFHEM 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +++GVT   +E SSH L + R+ G       FTNL +DH+DYH+T   Y  AK  LF +L
Sbjct: 164 NARGVTDCVMEVSSHSLVEGRVHGCDYDIAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQL 223

Query: 238 LP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  K   AI+ ADDA SKE  ++          + +   F+  + +         T
Sbjct: 224 GNSCPQDKPKYAILNADDAASKEF-EQVTAVPVITYGIDHDADFM-AENIDMHARGTTFT 281

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    V++  E +  V GRFE V   
Sbjct: 282 LVTPFEKREVRLKLAGKFSVYNMLAAIAAGVVSGVPLDSVIKTAEAMEGVRGRFELVN-G 340

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK IR     +I VV GCGGDRD+ KRP+M +IA   A  
Sbjct: 341 GQDFSVIVDYAHTPDSLENVLKTIRQFARKKIFVVVGCGGDRDKTKRPVMAQIACKYAHY 400

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I T DNPRSEDP  I  E+  G+ G  +    +R EAI+TAI      DV+++AGKGHE
Sbjct: 401 PIFTSDNPRSEDPIAILREMEKGVEGEQYECIPDRREAIKTAIFRAEAGDVVLIAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+ N E     D ++  E++
Sbjct: 461 TYQIIGN-EVHHFDDREVALEMI 482


>gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 501

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 175/504 (34%), Positives = 264/504 (52%), Gaps = 24/504 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ KD P      S       + KI+ +  DSR I  G  ++A+ G + DGH FI
Sbjct: 1   MKLLTLL-KDLP------SHTLTGSPQVKISHLECDSRRILPGSCYIALKGTRADGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+AI +GA A+V     + +   A +      + V+++R  +SL  +   G+   ++  +
Sbjct: 54  PEAIRRGACAVVAEMPCTQEAREAGVSW----VEVNDSRLAVSLMGAAWNGRPSRHMTMI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A     + ++S L +  IG  +         +  TTP P+ L   L  +
Sbjct: 110 GVTGTNGKTTTAYIAHSLLKQSWLRAGLIGTIAYDNGEEITPSTHTTPGPLELEHLLKEM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   VS+E SSH LDQ R+ GI    G FTNL +DH+DYH T + YF AK +LFE++
Sbjct: 170 YENGCRGVSMEVSSHALDQERVAGINFNVGIFTNLTQDHLDYHHTMENYFQAKAKLFEQM 229

Query: 238 LPKES-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                      A+I  DDAY + + +        V + G   G    +    A     + 
Sbjct: 230 AQDTKSRRKPVAVINIDDAYGRRLAEMFSGRMT-VKTYGSALGADFRMLVHHATAKGSEY 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  +GK +    PL G+F +YN+L A    I  GI     + +L+ +  VPGR E   T
Sbjct: 289 ELEYKGKSYLVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQVPGRLELF-T 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +  G +I++DYAHT ++LE + K ++ + S R+I VFGCGGDRD+GKRP+MG  A  L+D
Sbjct: 348 HPGGAQIFIDYAHTPDALENVCKTLKELCSRRLITVFGCGGDRDRGKRPLMGAAAARLSD 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             IVT DNPRSE+P  I ++I  G+P   +    +R  AI TAIE     D++++AGKGH
Sbjct: 408 ACIVTSDNPRSEEPLSIISQIAAGMPEGRYAIIPDRARAIATAIEQARLGDIVLIAGKGH 467

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    ++ G    S   ++ R + 
Sbjct: 468 ENYQELSTGRIDFSDAKEVRRNMF 491


>gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
 gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
          Length = 483

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 188/502 (37%), Positives = 280/502 (55%), Gaps = 26/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+  +            ++  E+ +  ++ DSR ++ G++F A+ G K  G  FI
Sbjct: 1   MTLNDLLLDE---------GLVVEGGEQTVRGLTLDSRKVEPGFVFAALPGVKVHGRDFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+A+  GA  I+                  P++ V      L+  A+R Y + P +I+A+
Sbjct: 52  PKALTAGASVILTDEPVEAP---------VPVIAVPEPAALLARMAARFYPRQPGHIVAI 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GKSS   F++QI   +G+ +  +G    T  +  +    TTP  + L  AL  L+ 
Sbjct: 103 TGTNGKSSTVEFLRQIWAGAGIEAACLGTLGVTRGNSVEVTGYTTPDAVALQAALDRLAG 162

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+ +EASSHGL QHR+DG++L  G+FTNL +DH+DYH     YF +K++LF E LP
Sbjct: 163 EGVTHLGMEASSHGLKQHRMDGVRLQVGAFTNLTQDHLDYHPDFADYFASKLKLFTERLP 222

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+I  D  +  ++   A   G  VL++G++G  + ++++      Q V  + +G++
Sbjct: 223 ADGRAVINVDSEWGGKMAASARERGLEVLTMGWRGSDLAIREITPRAASQSVIFAWKGRE 282

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL GEFQ+ NAL AA + ++ G+  A VL+ L+ L  VPGR E VG  + G  + 
Sbjct: 283 HALDIPLVGEFQILNALGAAAIALSDGVAEASVLDTLKGLAGVPGRLEKVGETAAGAPVL 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L+ +L+  R  T GR+IV+FGCGGDRD  KR  MG IA + AD  IVTDDN
Sbjct: 343 VDYAHTPDGLDKLLRAARPHTRGRVIVIFGCGGDRDASKRAKMGVIAANQADHVIVTDDN 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSEDP  IR  ++ G P   E  +R +AIR  + ML   D L++AGKGHET   V +  
Sbjct: 403 PRSEDPAAIRKAVLKGCPRAEEIADRAQAIRHGVAMLKAGDCLLIAGKGHETGQTVGD-I 461

Query: 480 KKMSVDCD------IIREILGL 495
                D +      + RE   +
Sbjct: 462 VHPFDDREQGRAALVAREAANV 483


>gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 493

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 185/475 (38%), Positives = 265/475 (55%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L++         I  ++ DSR ++ G++F A+ G +  G  FI  A+  GA AI+  
Sbjct: 8   LSELALTARGGANPDITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAAAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++V ++ R+ L+  A+  +G  P+ I+AVTGT+GK+SVASFV+
Sbjct: 68  ARGAEIAADELAASDAALIVTEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSVASFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI     L++  +G T    ++      TTP PI L + L+  +  GVTH ++EASSHGL
Sbjct: 128 QIWTELDLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  F+N  +DH+DYH T +AYF AK  LF+ +LP++  A+I   D    
Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVINLGDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+ + A   G  +L+VG +G  + L         Q +  S  GK       L G FQ  N
Sbjct: 248 EMRRIAEARGQNILTVGPEGADLCLLNQRFDATGQDLRFSWRGKVRQTRLNLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V + L  L  V GR +   T S G  ++VDYAHT +++   LK
Sbjct: 308 VLLACGLVIAAGEDPDRVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALK 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MGK A D AD+  VTDDNPRSEDP  IR  ++ 
Sbjct: 368 AMRPHVMGRLIAIVGAGGDRDATKRPLMGKAAADNADLVFVTDDNPRSEDPASIRTAVML 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   I+ L   D L++AGKGHET  IV +       D +  
Sbjct: 428 GAPDATEVGDRAEAILRGIDALQPGDALLIAGKGHETGQIVGDQVLP-FDDVEQA 481


>gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
 gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
          Length = 499

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/504 (33%), Positives = 266/504 (52%), Gaps = 31/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +LI    P       +      +++I+ +  DSR +    +F+ I G   DGH +I
Sbjct: 1   MKISELIKDITP-------VETRGDLDKEIDNIVYDSRQVTDNSLFICIEGFNTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI +GA A+V+     +         +   + V+++R+ +   AS  Y    +N+  +
Sbjct: 54  DKAIKKGAVAVVIEKDLEV------YSEDITYIRVNDSRETMGYLASTFYNYPLKNLSLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I + +G ++  +G    I          TTP  + L +  + +
Sbjct: 108 GVTGTNGKTTTTYLIKAILEEAGFNTGLVGTIKNIIGDETLPATRTTPESLDLYRLFARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GVTH  +E SSH LD  R++G++   G FTN+ +DH+DYH++   Y  AK RLF +L
Sbjct: 168 VDSGVTHAVMEVSSHALDLKRVEGMEFKIGVFTNISQDHLDYHKSLDEYLKAKSRLFRQL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    A++  DD++S +++K   +    +++ G +G    LK      +   V+  V G
Sbjct: 228 EP-GGWAVVNIDDSHSDKIIK---STTGNIITYGIEGD-CDLKANEINLSPTGVSYHVSG 282

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K+ F     L G F VYN+L A      +GI+   +   +EK+  V GRFE V    +  
Sbjct: 283 KESFKIDLNLTGLFNVYNSLAAISCGHVLGINGETIKAGIEKVQGVAGRFELVN-EGQDF 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + +E +L+  R    G IIVVFGCGGDRD+GKRP+MGKIA  L D  I+T
Sbjct: 342 AVVVDYAHTPDGMENVLETAREFVKGNIIVVFGCGGDRDKGKRPLMGKIATQLGDYCIIT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            DNPRSEDP +I  +I  GI         ++++ +R +AI +AI    K D++++ GKGH
Sbjct: 402 SDNPRSEDPMEIIKDIEKGIQEEVISDTPYVKEPDRRKAIFSAINSARKDDMVIIFGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I  +       D ++ RE L
Sbjct: 462 ETYQIFKDKTIP-FDDREVAREAL 484


>gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
 gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
          Length = 482

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 169/499 (33%), Positives = 267/499 (53%), Gaps = 29/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  Q+LI +  P++++        + +  I  +  +S+ I+ G IFVAI G   DGH FI
Sbjct: 1   MNAQELI-QIIPDILS-----VKGYTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+A+ +GA  ++   A  L             + V ++RK L+L ++  YG   + +  +
Sbjct: 55  PEALERGAGVVIGEKALDL--------GGKLYIRVKDSRKALALSSAWFYGYPADKLKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGTSGK++V   + ++ +  G+ +  IG    + ++       TTP  + L +  S +
Sbjct: 107 GVTGTSGKTTVTYLISEMLKDIGICTGIIGTIGNVLNNRKLPTSHTTPESLELNQLFSKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + ++++E SSH L   R++GIK   G FTNL +DH+D+H+T + YFN+K +LF + 
Sbjct: 167 VEENIEYLAMEVSSHSLKLQRVEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFSQ- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
                 A+I  DD   K ++           + G   K  +  + +    N     +   
Sbjct: 226 ---SKQAVINIDDESGKRLLSII---NIPRYTYGLDKKADLRAENIRMTANGVSYDLVFR 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K +   +  PG F VYN+L A    +A+G     ++  L+K   VPGRFE V  N++G 
Sbjct: 280 NKIYPVFYSTPGLFSVYNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELV-ENNQGI 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAH  + L+ +L  IR   +G+II VFGCGGDRD+GKRPIMGKI+ +L+D  I+T
Sbjct: 339 IVIVDYAHKPDGLKNVLLTIREFCTGKIITVFGCGGDRDKGKRPIMGKISSELSDYTIIT 398

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPRSE PE I  +I  GI    + +   R EAI+ AI +  K D +++AGKGHET  I
Sbjct: 399 SDNPRSEKPEAIIEQIESGIIGDNYEKITERAEAIKKAISIAKKGDAVLIAGKGHETYQI 458

Query: 475 VTNGEKKMSVDCDIIREIL 493
             + +     D ++ +E L
Sbjct: 459 FND-KIIHFDDREVAKECL 476


>gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
 gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
          Length = 490

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 189/476 (39%), Positives = 268/476 (56%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L + P    +  +++++ DSR +QAG +F A+ G +  G  FI  A+  GA AI+  
Sbjct: 5   LSDLGLTPKSGGDVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTD 64

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A +    +    ++  ++VV++    L+  A+  +G  PE ++AVTGT+GK+SVASF +
Sbjct: 65  RAGAEIAATDLAATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTR 124

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +  G+ +  IG T    +F      TTP P+ L + L+ + + GVTH ++EASSHGL
Sbjct: 125 QIWEALGVPAVNIGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ R+DG++L A +FTNL +DH+DYH T +AYF AK+RLF  LLP    A++  DD +  
Sbjct: 185 DQKRMDGVRLAAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHGL 244

Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            V +     G  V+ V  Y    + +         Q V    +G        L G FQ  
Sbjct: 245 RVAEACSTRGIEVIGVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGAFQAM 304

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L AAGL IA G D   V   L K+  V GR +     S G  IYVDY+HT +SLE+ L
Sbjct: 305 NVLTAAGLVIAGGEDPEDVFAVLHKMEGVRGRMQLAARRSHGAPIYVDYSHTPDSLEVAL 364

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR++VVFG GGDRD  KRP+MG  A   +D+A VTDDNPR+EDP  IRA ++
Sbjct: 365 KALRPHVLGRLVVVFGAGGDRDTAKRPLMGNAATLWSDVAFVTDDNPRTEDPAAIRAAVL 424

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G P      +R EAI  A++ML   D L++AGKGHET   V +       D +  
Sbjct: 425 AGCPEATVVADRAEAILRAVDMLEPGDALLIAGKGHETGQQVGD-VIYPFDDVEQA 479


>gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
 gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
          Length = 493

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/476 (39%), Positives = 269/476 (56%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L +     RE +I+ +S DSR +  G +F A+ G K  G  F+  A++QGA A++  
Sbjct: 7   LSELGLTARGGREARISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAALSQGAAAVLTD 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S   +++  + R+ L+   +  +G  P  ++AVTGT+GK+SVA+FV+
Sbjct: 67  AEGAQIAAETLAGSEVALVIAADPRQALAFACALFFGAQPATMIAVTGTNGKTSVATFVR 126

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           ++ Q  G  +  +G T     +    R TTP PI L KAL+  +  GV H ++EASSHGL
Sbjct: 127 RLWQEMGFRAVNLGTTGIEGDWQAPLRHTTPDPITLHKALAEAALAGVEHAAMEASSHGL 186

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH   + YF AK  LF  +LP+E  A++  DDA   
Sbjct: 187 DQRRLDGVQLRAAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARGI 246

Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +++  A   G   L+VG  QG  + L         Q++ +S  G        L G FQ  
Sbjct: 247 DMLAIAKARGQETLTVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQGQ 306

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL+AAGL IA G ++  V   L KL  V GR +   T   G  +YVD+AHT +++   +
Sbjct: 307 NALLAAGLVIACGAEAEDVFRALPKLDTVRGRMQLAATRDSGAAVYVDFAHTPDAVSTAI 366

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR++ + G GGDRD GKRP+MG  A + AD+ IVTDDNPRSEDP  IR +++
Sbjct: 367 KALRPHVMGRLVAIIGAGGDRDAGKRPLMGAAAAEHADVVIVTDDNPRSEDPAAIRLQVL 426

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G P  IE G+R EAI   ++ML   D L+V GKGHET  IV +       D +  
Sbjct: 427 GGAPEAIEVGDRAEAILRGVDMLQPGDALLVCGKGHETGQIVGD-TVYPFDDVEQA 481


>gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
 gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
          Length = 483

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 171/503 (33%), Positives = 261/503 (51%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         +++  L    +    + ++N++  DSR +  G +FVAI G   DGH F
Sbjct: 1   MKL--------IQILKGLEYKKISGTLDLEVNKIEYDSRKVLKGDVFVAIEGFNVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           I +AI  GA+ I+ S              N+  + V+NTRK L++ AS  YG       +
Sbjct: 53  INKAIENGAKVIICSKNTEF-------YENSTYIKVENTRKALAIMASNFYGNPSNEIKL 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    ++ I + +G ++  IG  +  I         TTP  + L +    
Sbjct: 106 IGITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANFIGEKKIKAERTTPESLELQEMFKK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ + + +  +E SSH L   R+ G+K   G FTNL +DH+D+H+T + Y+ AK+ +F  
Sbjct: 166 MNDKNIEYCIMEVSSHSLSLDRVYGLKFSQGIFTNLTQDHLDFHKTFENYYKAKLSMF-- 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  +II  DD Y   ++K       ++     +   +  + +       +  +  +
Sbjct: 224 --HNAKNSIINIDDFYGDRMLKDIPKTSTKITYSTERQADLFAENIVNHSRGAEFDLIYK 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
                    +PG + VYNAL +A  C+  GI    V E LE + VVPGR E V      G
Sbjct: 282 ETMIHINLSIPGIYNVYNALCSAAACLEEGISIEKVKEGLENV-VVPGRCENVTKKYNLG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + LE IL   +  T GR+I VFGCGGDRD+ KRPIMGKI  +L+DIAI+
Sbjct: 341 FDVIVDYAHTPDGLENILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSNLSDIAII 400

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPR+E+P  I  +++ GI    +I   NR EAI+ A++M  K DV+VVAGKGHE   
Sbjct: 401 TSDNPRTEEPMSIIDDVVSGIDKDNYIVVENRKEAIKQAMKMAKKDDVIVVAGKGHEDYQ 460

Query: 474 IVTNGEKKM---SVDCDIIREIL 493
           I+ +         V  DI++E+ 
Sbjct: 461 ILKDKVIHFDEREVIADIVKELF 483


>gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
 gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
          Length = 496

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 178/475 (37%), Positives = 271/475 (57%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +     R+ K+ +++ DSR ++ G++F A+ G +  G  FI  A+  GA A++  
Sbjct: 11  LRDLGLTARGGRDVKVTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGAGAVLTD 70

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         ++  ++V ++ R+ L+  ++  +G  PE ++AVTGT+GK+SVA+F +
Sbjct: 71  AAGAKIAADVLGGADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTSVATFTR 130

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI Q  GL +  +G T     +    + TTP PI L + L+  +  GVTH ++EASSHGL
Sbjct: 131 QIWQELGLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLAGAAESGVTHAAMEASSHGL 190

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q RLDG++L+A  FTN  +DH+DYH + + YF AK  LF  +LP++  A+I  DD    
Sbjct: 191 SQRRLDGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINIDDPRGV 250

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +++  A   G  VL+VG +   I L+        Q++ +S EG+       L G FQ  N
Sbjct: 251 DMVAIARARGQEVLTVGREAADICLEAQRFDATGQEIRLSFEGEVRQERLGLIGGFQADN 310

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AAGL IA G D   V + L  L  V GR +       G  ++VDYAHT +++   +K
Sbjct: 311 VLLAAGLVIACGGDPDDVFDVLPMLGTVRGRMQLAAMRDNGAAVFVDYAHTPDAVATAIK 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD+GKR +MG+ A + AD  IVTDDNPRSEDP  IRA ++ 
Sbjct: 371 ALRPHVMGRLVAIVGAGGDRDKGKRLLMGQAAAEFADSVIVTDDNPRSEDPASIRAMVME 430

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +E G+R EAI   ++ L   D L++ GKGHE+  IV +       D +  
Sbjct: 431 GAPEALEVGDRAEAILRGVDALGPGDALLICGKGHESGQIVGD-TVFPFDDAEQA 484


>gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
 gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
          Length = 495

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/475 (39%), Positives = 270/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      + +I  ++ DSR ++ G++F A+ G++  G  FIP A+ +GA AI+  
Sbjct: 10  LSQLGLTARGGADPQIRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTD 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S+  ++VV++ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+FV+
Sbjct: 70  AAGAGIAAKVLDESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVR 129

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 130 QIWTELGHEAVNMGTTGIEGAWSYPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 189

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A+I  +D    
Sbjct: 190 DQRRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRGA 249

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  V+SVG     + L  +      Q +  +   K +     L G FQ  N
Sbjct: 250 EMRAVAAARGQEVISVGRGLGDLSLLGLRYDGTGQDMRFAWHDKPYQVRLNLIGGFQAEN 309

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V E L  L  V GR +       G  ++VDYAHT +++   +K
Sbjct: 310 VLLACGLAIAGGEDPERVFETLPHLTTVRGRMQLAAERDNGSAVFVDYAHTPDAVASAIK 369

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 370 ALRPHVLGRLIAIVGAGGDRDTSKRPLMGQAAHENADVVIVTDDNPRSEDPAAIRAAVKG 429

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G PG IE G+R EAI    +ML   D L++ GKGHET   V +       D +  
Sbjct: 430 GAPGCIEIGDRAEAILRGADMLGPGDALIICGKGHETGQTVGD-TVLPFNDVEQA 483


>gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 483

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 260/501 (51%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I  V  DSR  +  ++F+AI G K DG L++
Sbjct: 1   MKLIDILKGVNCEIKGD--------PNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA AIVV                   ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAIAIVVDREIKE-------YPGVTTVLVEDARAAMAKIASNFYNNPTTKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G     I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L   R++  +     FTNL +DH+D+H   + Y   K +LF+  
Sbjct: 166 VNKGVKYVVMEVSSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFK-- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +  ++I  DD YS  +++   ++  RVL+ G +   ++  K +    +  +  + +E
Sbjct: 224 -MAKRASVINIDDKYSSMMIE---SSKARVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIE 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K  +    +PG F VYNAL A  +   +GI    V E L ++  V GRFE V T  +  
Sbjct: 280 DKKEEMSLKIPGLFSVYNALAAITVADFLGISLRSVREALSQVT-VKGRFEPVET-GKDF 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++DYAHT + ++ +++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T
Sbjct: 338 YVFIDYAHTPDGIQNMMEALKEYKAGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILT 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSE+P +I ++I  GI      ++   NR EAIR A+    K DV+++AGKGHET 
Sbjct: 398 SDNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKGHETY 457

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ N       + +I++EIL
Sbjct: 458 QIIGNKVIP-FDEREIVKEIL 477


>gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 1; AltName:
           Full=Meso-A2pm-adding enzyme 1; AltName:
           Full=Meso-diaminopimelate-adding enzyme 1; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium
           acetobutylicum ATCC 824]
 gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum EA 2018]
          Length = 482

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/500 (33%), Positives = 258/500 (51%), Gaps = 29/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ +I     ELI             +I+ ++ DSR +    +F  I G   DGH FI
Sbjct: 1   MKLKKIIGDVKYELICG-------DLNVEIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+ +GA+ IV +              N  ++ V++ RK +++  +  Y      +  +
Sbjct: 54  DKAVEKGADVIVCTK-------VPKKLPNCTVVKVEDGRKAMAVMGANFYDNPSHKLKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ + + SG     IG  +  I     ++  TTP  + L K  S +
Sbjct: 107 GITGTNGKTTSTYMMKSMLESSGYKVGLIGTIANYIGDKKIESHRTTPESLELQKLFSDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               + +  +E SSH L   R+ GI    G FTNL +DH+D+H+T + Y+ AKM LF+  
Sbjct: 167 VHDKIDYCVMEVSSHSLYLDRVYGIVFEEGIFTNLTQDHLDFHKTFENYYKAKMILFKN- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                 +II  DD Y + V K A N     ++ G  +   +  + +       +  +   
Sbjct: 226 ---SKRSIINIDDKYGERVFKDAGNDK---ITYGLTEKADLKAENLKMTSRGTEFDLCYR 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
           G        +PG++ VYNAL +   C+  GI    V + L KL  VPGR E V  N+   
Sbjct: 280 GLREHVKINIPGKYNVYNALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLD 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAHT + LE +LK  R  T GR+I VFGCGGDRD+ KRPIMG+I   L+DIA++
Sbjct: 340 FDVVLDYAHTPDGLEKVLKASREFTKGRLISVFGCGGDRDKTKRPIMGEIGSKLSDIAVI 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSE+PE+I  +I+ GI    ++   NR EAI+ A+ M  K DV+V+AGKGHE   
Sbjct: 400 TSDNPRSENPEEIIKDIVQGIKTDNYVIVENRKEAIKKAMLMAKKDDVIVLAGKGHENYQ 459

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       + +I+ E +
Sbjct: 460 ILGDKTIH-FDEKEIVSEFI 478


>gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 484

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/500 (33%), Positives = 272/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++     +L+           +++I+ ++ DSR +    IF+ I G   DGH +I
Sbjct: 1   MNLKDILKGIDYKLV-------QGSLDKEISSINYDSRKVNKSDIFICIKGYATDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  I+      +QD    +  N  ++ V +TRK L+L     Y    + +  +
Sbjct: 54  QKAIENGASVII------MQDDIEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G     IG  +  I +       TTP  + L +  + +
Sbjct: 108 GITGTNGKTTTAFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +  +E SSH L+  R+ G+    G FTNL RDH+D+H+T + Y+N+K +LF+  
Sbjct: 168 VNKGVEYCVMEVSSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
               +  II  DD Y K+V+K  +    + +      +  + K        + ++  V  
Sbjct: 227 ---SNIRIINNDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNL 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
            K+ +F+  +PGE+ +YNAL A G C  + I    +   + K+  VPGR E   TN    
Sbjct: 284 EKEEEFILSIPGEYNIYNALGAIGACYKLNIPMEAIKNGINKVI-VPGRCERTATNYNLP 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +DYAHT + L+ IL+  R  T GR+I +FGCGGDRD+ KRP MGKI  D+ADIAIV
Sbjct: 343 YDIIIDYAHTPDGLQNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIV 402

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSE+P +I  +I+ GI    +    NR +AI+ A+++  + DV+V+AGKGHET  
Sbjct: 403 TSDNPRSEEPMRIIEDILVGIEKDNYEIIENRKDAIKKAMDIAKENDVIVIAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       + +++++IL
Sbjct: 463 ILKDKTIH-FDEREVVKQIL 481


>gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 483

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 165/495 (33%), Positives = 269/495 (54%), Gaps = 21/495 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLEYSIIKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ +S  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----DLSYYKDCTIIKVPDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G  +  I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKN----AQNSVI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLF 304
             DD+Y ++V+K+A       ++ G + K   LK      + + V      + +      
Sbjct: 234 NIDDSYGEKVLKKALGNK---ITYGVE-KNCDLKAENLHMHSRGVEFDTIFKNEKETIAL 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYA 363
            +PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G  + VDYA
Sbjct: 290 NIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP+ I  +++ GI    +I    R +AIR A+EM  + DV+VVAGKGHE   I+ +    
Sbjct: 410 DPKLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEMAKENDVIVVAGKGHEDYQILKDKTIH 469

Query: 482 MSVDCDIIREILGLI 496
              + ++I E++  I
Sbjct: 470 -FDEREVIEELIKEI 483


>gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Ahrensia sp. R2A130]
 gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Ahrensia sp. R2A130]
          Length = 1015

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 213/497 (42%), Positives = 288/497 (57%), Gaps = 15/497 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+    PE                I  V+ DSR ++ G +F+A+ G+ +DG  F+
Sbjct: 1   MRLNDLLGGGLPEASRD------DVGALDITNVTVDSRKVKPGGLFIAVSGSAQDGAKFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+  GA A++      +   S       P+L   N RK L+  ASR + + PE I AV
Sbjct: 55  PMAVENGAVAVLADRDADIGKIS------VPVLRNGNIRKALANIASRFHPRQPEIIAAV 108

Query: 121 TGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLS 178
           TGT+GK+SVASF++QI   +       IG T   +    D    TTP P+ L + L  L+
Sbjct: 109 TGTAGKTSVASFLRQIWGHKDDAVPAMIGTTGVFAPGRSDYGSLTTPDPVKLHELLDELA 168

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GVTH ++EASSHGLDQ RLDG++L    FTNLGRDH+DYH   + Y  AK+RLF +LL
Sbjct: 169 GEGVTHCAMEASSHGLDQMRLDGVRLAVAGFTNLGRDHLDYHADIEEYLTAKLRLFGDLL 228

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
               PA+IYADD +S  V+  A   G  V +VG +G+FI +K++      Q   +  +G+
Sbjct: 229 KPGQPAVIYADDEFSGRVIDHAEFHGLDVKTVGREGEFIAVKRIEQHRTSQVAEVVCDGE 288

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +    PL GEFQ+ NALVAAG+ IA G+++      L  L    GR E +G  + G   
Sbjct: 289 TYRVELPLAGEFQLANALVAAGMAIASGMEAKAAFIALTTLEGASGRLELIGKTTEGAAC 348

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAH   +LE +L  +R  T+G++++VFGCGGDRD GKR IMG+IA  +AD  IVTDD
Sbjct: 349 YVDYAHKPEALENVLAALRPYTTGQLVLVFGCGGDRDPGKRAIMGEIAARMADRVIVTDD 408

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPRSE+P  IRA I+   P   E G+R EAI  A+E L   D L+VAGKGHE   IV + 
Sbjct: 409 NPRSENPGSIRAAIMEAAPDATEIGDRYEAIINAVEGLGSGDTLIVAGKGHEEGQIVGD- 467

Query: 479 EKKMSVDCDIIREILGL 495
                 D  ++RE L L
Sbjct: 468 TVLPFSDHAVLREALAL 484



 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 167/456 (36%), Gaps = 34/456 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P    E  I  +S D+R +Q G  + AI G+  DGH F+  A A GA   VV+  +   
Sbjct: 557 LPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVAAAHAAGATVSVVAKDW--- 613

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                      +LVVD+    L         +    ++A+TG+ GK++    ++      
Sbjct: 614 -VGRLEGDCGRLLVVDDVLHALVRLGLAARARTSAQVVAITGSVGKTTTKEMLRTGLAAC 672

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRL 199
           G     +               +  +   +   L+ + +     V     +H G     +
Sbjct: 673 GHVHAAV--------------ASFNNHWGVPLTLARMPADSDFAVIEIGMNHPGEITPLV 718

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              +       N+   H+    +     +AK  +F+ L+P    A++ ADD     ++ R
Sbjct: 719 QMTRPHVAIINNVAAVHLGAFDSVDEIAHAKSEIFDGLIP-GGTAVLNADDERLPIMLDR 777

Query: 260 AHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           A  A     VL        + L+K+  + +   ++ +V G+        PG     NALV
Sbjct: 778 ATEAEVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNALV 837

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHTSNSLEMILK 374
              +      D A V   L ++  V GR +    +  +G  + +D  Y     S+   L 
Sbjct: 838 VLAVAKLFDADLAKVSLALAEMEAVKGRGQQHKLSVGQGAAVLIDESYNANPTSMAASLD 897

Query: 375 ---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
              +      GR I V G   +       +   IA  ++D  I +       D   +R  
Sbjct: 898 LLGSREPAPGGRRIAVLGDMLELGATSAQLHADIADPISDNRI-SRVFLAGSDMRALRDT 956

Query: 432 II--HGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++   G+   + +  + I AI    + +   DV++V
Sbjct: 957 LMNTKGVHVTWCDTADEIGAILA--DEIRSGDVVMV 990


>gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
          Length = 490

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 165/504 (32%), Positives = 253/504 (50%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+            + P       I  +  DSR ++ G +F+ I G   DGH F 
Sbjct: 1   MKLQTLLSYLH-------DLTPYVGENPTITSIEMDSRQVKKGALFICIKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+  GA AI+      +         + P++VV ++R+ +++ A   YG+    +  +
Sbjct: 54  KQAVENGAVAIIAERPLDV---------DVPVIVVRDSRRAMAVLADAFYGQPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++QI +++   +  IG     I   A   + TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTHIIEQIVRKANKKTGLIGTVHIKIGDDAYPTQNTTPESLLLQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +GV    +E SSH L   R+ G       FTNL +DH+DYH T + Y NAK  LF +L
Sbjct: 165 ADEGVDVAIMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 238 LPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
             +        A++  DD  S+      H     V++ G +    I  K++  + N    
Sbjct: 225 GNRYDHERPKFAVLNNDDPASQY---YKHMTAATVITYGTKTDSDIMAKRIDIVPNGMAF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L A   C+  GI   +++E +E++  V GRFE V  
Sbjct: 282 DLITPHGTARVKTKLIGLFNVYNLLAAVSACLVSGIPFPVIVEAIEEISGVAGRFETVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +      + VV GCGGDRD+ KRP+M K+A+  AD
Sbjct: 341 EGQDFTVIVDYAHTPDSLENVLKTAQQFARKNVYVVVGCGGDRDRTKRPLMAKVAVQYAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +AI T DNPRSEDPE+I  ++  G+PG  ++   +R EAI  AIE   + D++++AGKGH
Sbjct: 401 VAIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEGDIVLIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+ +       D  + RE +
Sbjct: 461 ETYQIIGD-RVIAFDDRLVAREAI 483


>gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 481

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 216/494 (43%), Positives = 292/494 (59%), Gaps = 16/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L D++              P      ++  +++ S  +  G IF A+ G+K DG  ++
Sbjct: 1   MRLSDVLPAGIE--------PPPGAGSVEVTGITAASAAVGKGAIFAALPGSKVDGASYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+ +GA AIV+     +     T+ +   ++ VDN R  L+  A++  G+ P   +AV
Sbjct: 53  PDALQRGASAIVIGKGKGV-----TVPAGVALIEVDNPRAALAKIAAKFAGRQPRCAVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA F +QI    G  +  +G    +    A    LTTP P+ L   L+ L+ 
Sbjct: 108 TGTSGKTSVADFTRQIFTSLGRKAASVGTIGIVKPDGAVYGSLTTPDPVTLHTTLASLAD 167

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH++ EASSHGLDQ+RLDG++L A +FTNLGRDH+DYH T++AY  AK+RLF ELL 
Sbjct: 168 EGVTHLAFEASSHGLDQNRLDGVELSAAAFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQ 227

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              PA+I  D A S +V   A   G RV++VG  G  +    +     +Q++ I  +G+ 
Sbjct: 228 PGQPAVINTDGARSADVAAAAKARGLRVMTVGQSGDTLKRTSLTRDGFQQRIGILFDGRS 287

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           FD   PL G +QV NALVAAGL IA G  +  VL  LE L  VPGR E +G    GG   
Sbjct: 288 FDVRLPLVGAYQVENALVAAGLAIATGEKADAVLAALESLKGVPGRLEIIG-ERNGGLAV 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +L   L   R   +GR+I VFGCGGDRD+GKRPIMG+I+++ AD+ IVTDDN
Sbjct: 347 VDYAHKPEALAAALDACRPFVTGRLISVFGCGGDRDKGKRPIMGRISVEKADVTIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSED   IRAEI+ G  G  E GNR EAI TA+ M+   DV ++AGKGHET  IV +  
Sbjct: 407 PRSEDAASIRAEILAGAAGAREIGNRAEAIATAVSMMQPGDVALIAGKGHETGQIVGD-R 465

Query: 480 KKMSVDCDIIREIL 493
                D D +R+ L
Sbjct: 466 ILPFSDHDEVRKAL 479


>gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 488

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 157/495 (31%), Positives = 257/495 (51%), Gaps = 27/495 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI  L    ++ R +  I  +  DSR ++ G++FV I G   DGH FIP+AI +G+ 
Sbjct: 5   LRELIKDLKEKRVEGRQDLVIRGIECDSRKVEEGFLFVCIPGFNFDGHKFIPEAIKRGSR 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            +VV               +  ++ V NTR  L++ A+R YG   + +  + + GT+GK+
Sbjct: 65  VVVVEKDV-------KTAKDVTVIKVPNTRYALAVLANRFYGYPSKKLQVVGIAGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    V+ + +++G      G     + +       TTP  + L   L+ L ++   +V 
Sbjct: 118 TTTYLVRDVLKKAGKKVALFGTIEYDLGNRTLPASTTTPQSLELQAMLNELVNKEFEYVV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E S+H     R+ G +   G FTN+ RDH+D+H+T + Y  A+++ F  L      A+I
Sbjct: 178 MEVSTHATVLDRVTGCEFDIGVFTNISRDHMDFHKTMENYLEAEIKFFRLLSRTGRRAVI 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             DD Y++ ++K   N    +L+ G   K   I    +       +  +     +  F  
Sbjct: 238 NIDDPYAEHIIK---NTRTEILTYGINDKNADIRAFDIKVSKTGSRFNVITPLGETVFYL 294

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG + VYNAL A G+ I+ G++   + E +     VPGRFE +    +   + VDYAH
Sbjct: 295 RLPGRYNVYNALAAVGVGISEGLNLNEIREAIAH-ASVPGRFERIDC-GQSFDVIVDYAH 352

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++L+  L+  R ++ GRIIVVFGCG D+D  +RP+MG +A  ++DIAI+T DN R+E+
Sbjct: 353 TPDALQKALETARGLSEGRIIVVFGCGDDKD--RRPLMGVVAARMSDIAILTSDNSRNEE 410

Query: 425 PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           P +I ++I  GI        ++   +R EAI  A+EM  + D++++AGKGHE   I+ + 
Sbjct: 411 PSEIISDIESGIKKVDNSFQYLVIEDRFEAITQALEMAKEGDLVLIAGKGHEEYQIIKD- 469

Query: 479 EKKMSVDCDIIREIL 493
            K    D  +   IL
Sbjct: 470 RKIPFNDRKVAERIL 484


>gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 498

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 255/509 (50%), Gaps = 34/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+ L    F   IN             +  +++DSR ++ G +FVA+ G+  DGH F 
Sbjct: 1   MRLRQL----FQPFIN---FQVTNAENPDVLNITTDSREVEPGSLFVAVRGHTVDGHRFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+ +GA A++V          A + ++ P +VV +TR + +L A RL+G       ++
Sbjct: 54  GQAVERGAVAVMVEEPV------ADVPASIPQVVVPDTRHWSALVADRLFGSPSRELRVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   V+ +   +G  +  IG     + S +     TTP  + + + L   
Sbjct: 108 GVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTVGAKLGSTSWSLPNTTPEAVEVHRLLRRF 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G TH  +E SSH L + R  G+     +FTNL +DH+D+H T + Y  AK  LF  L
Sbjct: 168 VDAGATHAVMEVSSHALVERRAAGVSFACAAFTNLTQDHLDFHGTMERYAAAKALLFSRL 227

Query: 238 LPKES-------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ 289
                        A+I ADD +S  +   A  +   +L+ G +    +  + V    +  
Sbjct: 228 GNGTGDDPARSVYAVINADDPWSPVM---AEASAAPILTYGIERAADVRARDVRLSASGA 284

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  +      F+   PL G F VYN L A  + +  G+ ++ + E +     VPGR E +
Sbjct: 285 RFWVDSPAGAFEIETPLIGRFNVYNTLAAVAIALVEGLAASEIQEGIRSYPSVPGRMERI 344

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   ++VDYAHT + LE +L ++R     R++VV GCGGDRD+ KRP M ++A+ L
Sbjct: 345 D-EGQPFSVFVDYAHTPDGLENVLASVREFAPARVLVVVGCGGDRDRTKRPKMAEVAVRL 403

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD AI T DNPRSEDP  I AE+  G+         E+ +R  AI  AI      DV+V+
Sbjct: 404 ADRAIFTSDNPRSEDPVAILAEMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVI 463

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHE   I+   EK+   D +  R  +
Sbjct: 464 AGKGHEDYQIIGA-EKRHFDDREEARRAI 491


>gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
 gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
          Length = 483

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 175/503 (34%), Positives = 265/503 (52%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         +++ +L    +    +  +N+V  DSR I +G +FVAI G   DGH F
Sbjct: 1   MKL--------IQILKELDYTNLNGTLDLDVNKVEYDSRKILSGDVFVAIEGFNVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           IP+AI  GA+ IV S           I  +   + V+NTRK L++ AS  YG       +
Sbjct: 53  IPKAIENGAKVIVCSKDTE-------INESCTYIKVENTRKALAIIASNFYGNPSNKIKL 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    ++ I + +G ++  IG  +  I         TTP  + L +    
Sbjct: 106 IGITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANFIGEEKIKAERTTPESLELHEMFKK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + + +  +E SSH L   R+ G++   G FTNL +DH+D+H+T + Y+ AK+ +F  
Sbjct: 166 MKDKNIEYCIMEVSSHSLSLDRVYGLEFSQGVFTNLTQDHLDFHKTFENYYEAKLSMF-- 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  +II  DD+Y + ++K   N   +V     +   +    +       +  +  +
Sbjct: 224 --NNAKNSIINIDDSYGERMLKDIPNTNLKVTYSTERQADLVANNIVNHARGAEFDLIYK 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
           G        +PG + VYNAL +AG C+   I    V E LE + VVPGR E V      G
Sbjct: 282 GTTIHINLSIPGIYNVYNALCSAGACLEEEISIEKVKEGLENV-VVPGRCENVTKKYNLG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + LE IL   +  T GR+I VFGCGGDRD+ KRPIMGKI  DL+DIAI+
Sbjct: 341 FDVIVDYAHTPDGLENILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDLSDIAII 400

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPR+E+P  I  +++ GI    ++   NR +AI+ A+++  K DV+VVAGKGHE   
Sbjct: 401 TSDNPRTEEPMSIIDDVVSGIDKDNYVVVENRKDAIKEAMKIAKKDDVIVVAGKGHEDYQ 460

Query: 474 IVTNGEKKM---SVDCDIIREIL 493
           I+ +         V  DI++E+ 
Sbjct: 461 ILKDKVIHFDEREVIADIVKELF 483


>gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 483

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/495 (33%), Positives = 269/495 (54%), Gaps = 21/495 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLEYSFIKENKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ +S  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G  +  I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKN----AQNSVI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLF 304
             DD+Y ++V+K+A       ++ G + K   LK      + + V      + +      
Sbjct: 234 NIDDSYGEKVLKKALGNK---ITYGVE-KNCDLKAENLHMHSRGVEFDTIFKNEKETIAL 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYA 363
            +PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G  + VDYA
Sbjct: 290 NIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP+ I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +    
Sbjct: 410 DPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKDKTIH 469

Query: 482 MSVDCDIIREILGLI 496
              + ++I E++  I
Sbjct: 470 -FDEREVIEELIKEI 483


>gi|126741290|ref|ZP_01756968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717608|gb|EBA14332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
          Length = 499

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 185/481 (38%), Positives = 274/481 (56%), Gaps = 1/481 (0%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +D    +++L +      +  I+ +S DSR    G +F A+ G++  G  FIP A+ +GA
Sbjct: 8   QDLSRPLSELGLTARGGADPVIHSISVDSREALEGGLFAALPGSQVHGAKFIPAALERGA 67

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            AI+  +  +         S+  +++V++ R+ L+  A+  +G  PE ++AVTGT+GK+S
Sbjct: 68  TAILTDAKGAEIAAQPLSESHAAVVIVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTS 127

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           VASFV+QI    G  +  +G T    +++     TTP PI L +AL+  ++ GVTH ++E
Sbjct: 128 VASFVRQIWCELGHQAVNLGTTGVEGAWSYPLAHTTPEPITLHRALARAAAAGVTHAAME 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGLDQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +LP+E  A+I  
Sbjct: 188 ASSHGLDQGRLDGVQLAAAGFTNFTQDHLDYHKTFEAYFAAKAGLFRRVLPEEGVAVINM 247

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +D    E+   A   G  VL+VG     + L  +      Q +  +   + F +   L G
Sbjct: 248 NDPRGAEMRAIAAARGQEVLTVGRGLGDLSLSGLRYDGTGQDLRFAWHDRPFQYRLNLIG 307

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  N L+A GL IA G D   V   L  L  V GR E   T   G  ++VDYAHT ++
Sbjct: 308 GFQAENVLLACGLAIASGEDPEAVFATLPHLTTVRGRMEHAATRENGASVFVDYAHTPDA 367

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +   +K +R    GR++ + G GGDRD GKRP+MG+ A + AD+ IVTDDNPR+EDP  I
Sbjct: 368 VATAIKALRPHVLGRLLAIVGAGGDRDAGKRPLMGQAAAENADLVIVTDDNPRTEDPAAI 427

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           RA +  G P  +E G+R EAI   +++L   D L++ GKGHE+  IV + +     D + 
Sbjct: 428 RAAVKGGAPEALEVGDRAEAILRGVDLLGPGDSLLICGKGHESGQIVGS-DVLPFDDVEQ 486

Query: 489 I 489
            
Sbjct: 487 A 487


>gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium vitis S4]
 gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase
           [Agrobacterium vitis S4]
          Length = 486

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 236/491 (48%), Positives = 309/491 (62%), Gaps = 13/491 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   DF +L   L        + +I  +++DSR ++ G +FVA+ G K DG  F 
Sbjct: 1   MKLRDLASGDFGDLTGPLD---GPVGDVEITGITADSRKVEPGMLFVALQGVKADGAGF- 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    A  V+   +     + +    P LV D  R  L+L A+R+Y   PE ++AV
Sbjct: 57  --------VADAVARGAAAVLSGSHLDIAVPALVTDQPRHALALLAARVYSGQPETMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +GL+S QIG T  IS    D    TTP P+ L + L+ L+ 
Sbjct: 109 TGTAGKTSVASFTRQIWAYAGLASAQIGTTGVISPTRSDYGSLTTPDPVALHQLLADLAQ 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T   Y  AKMRLF+ LLP
Sbjct: 169 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S E ++ A  AG  V +VG  G F+ LK+V    +KQ   I  +G  
Sbjct: 229 KGSPAVIFADDEWSAEAIRVARQAGHDVRTVGRAGDFLSLKRVEHFRHKQIAEIHHQGAI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQ+ NALV+AGL I+ G++++L L+ LEKL    GR E VG  + G   Y
Sbjct: 289 FEVDLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASGRLELVGQANSGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L  +R  TSGRIIVVFGCGGDRD+GKRPIMG+IA  LADI IVTDDN
Sbjct: 349 VDYAHKPDALEKVLTAVRPFTSGRIIVVFGCGGDRDKGKRPIMGEIADRLADIVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE    IR+E++   P  IE G+R +AIR A+ ML   D L+VAGKGHE   IV    
Sbjct: 409 PRSEVAATIRSEVMAATPKGIEIGDRAQAIRAAVAMLATGDTLIVAGKGHEEGQIVGAQT 468

Query: 480 KKMSVDCDIIR 490
              S   +I +
Sbjct: 469 LPFSDHAEIRK 479


>gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
 gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
          Length = 480

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 209/476 (43%), Positives = 287/476 (60%), Gaps = 11/476 (2%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  EL +  + F  Q  E  +  ++ DSR ++ G +F A+ G+K DG  FI  AI  GA 
Sbjct: 2   NLRELFSGDATFDPQTSELAVAGLAVDSRAVKPGDVFFALGGSKTDGARFIGAAIEAGAV 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V   A+S+         + P++V  N R+ L+L A+  Y + P+ I AVTGTSGK+SV
Sbjct: 62  AVVADHAHSV---------SVPVIVTSNPRRALALAAAAFYPRQPQTIAAVTGTSGKTSV 112

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVE 188
           A+F +Q+    G  +  +G    +S         TTP P+ L +AL  L+  GVTH+++E
Sbjct: 113 AAFTRQLWDSLGYDAASLGTIGIVSRHRNVYGSLTTPDPVALHRALDELAGDGVTHLALE 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGLDQHRLDG+++ A +FTNL RDH+DYH T + Y  AK+RLF +L P+ +PA+I A
Sbjct: 173 ASSHGLDQHRLDGVRIAAAAFTNLSRDHMDYHPTVEHYLAAKLRLFTDLAPEGAPAVIAA 232

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D  +S  V+  A      V+++G +G+ I L         Q++TI   G+      PL G
Sbjct: 233 DHEHSAAVIAAARARKLDVITIGRKGEGIRLVDATIDGFGQKMTIQHRGQTHRLRLPLVG 292

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           EFQ+ NALVAAGL IA G D+      LE+L    GR E +G + RG  ++VDYAH  ++
Sbjct: 293 EFQIENALVAAGLVIATGGDATKTFSALEQLEGAKGRLELIG-DCRGAPVFVDYAHKPDA 351

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L   L+ +R    GR++VVFG GGDRD GKRP+MG IA+  AD  IVTDDNPRSE P  I
Sbjct: 352 LMKALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGAIAMRYADAVIVTDDNPRSERPATI 411

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           RAEI+    G  E G+R EAIR+A+  L   DVL++AGKGHET  IV +     S 
Sbjct: 412 RAEILAAAKGAKEIGDRAEAIRSAVASLQPGDVLLIAGKGHETGQIVGDKVLPFSD 467


>gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
          Length = 489

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 218/494 (44%), Positives = 303/494 (61%), Gaps = 11/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  LI    P     LS       +  +  +++DSR ++   +F A+ G K DG  F+
Sbjct: 1   MNLSALISALPP---GTLSAPSSANLDFSVTGLTADSRVVEPSNLFFALAGVKTDGARFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI++       ++A      +        +L  D+ R  L+  A+  +G  P  + AV
Sbjct: 58  QEAISK------GAAAIVAASGAGISTDGVAVLRSDDPRLALARMAAAFFGPQPRVMAAV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF++QI   +G  +  +G T  ++    +    TTP P+ L + L+ L+S
Sbjct: 112 TGTAGKTSVASFLRQIWAHAGEKAAMLGTTGVVAPGRSEYGSLTTPDPVALHRLLAELAS 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+ L    FTNLGRDH+DYH T + Y  AKMRLF+ LLP
Sbjct: 172 EGVTHAAMEASSHGLDQRRLDGVMLSVAGFTNLGRDHMDYHPTMEDYMAAKMRLFDTLLP 231

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S++ ++ A  AG RVL+VG +G F+ LK+V  + +KQ   + ++G+ 
Sbjct: 232 KGAPAVIFADDPWSEQAVEVAERAGARVLTVGRKGGFLSLKRVEHLRHKQIAEVHLDGRI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQ+ NALVAAG+ IA G  +   +  LE L    GR E VG+   G   Y
Sbjct: 292 FEIHVPLAGDFQISNALVAAGMAIATGTGADQAMAALEHLTGASGRLELVGSTGDGAPAY 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   ++E +L  +R  T+GRII+VFGCGGDRD+GKRPIMG IA  LAD+ IVTDDN
Sbjct: 352 VDYAHKPEAMENVLDAVRPFTTGRIIMVFGCGGDRDRGKRPIMGSIATKLADVVIVTDDN 411

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PR+EDP +IR+EI+   PG  E  +R EAIRTA+EML   D L+VAGKGHE    V +  
Sbjct: 412 PRTEDPAEIRSEILVAAPGATEIADRAEAIRTAVEMLEAGDTLIVAGKGHEQGQTVGD-T 470

Query: 480 KKMSVDCDIIREIL 493
                D + IR  L
Sbjct: 471 VLHFSDHEEIRAAL 484


>gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Pseudovibrio sp. JE062]
 gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Pseudovibrio sp. JE062]
          Length = 1257

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 211/495 (42%), Positives = 300/495 (60%), Gaps = 6/495 (1%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL      E+ +     P       I+ +++DSR ++ G++F A+ G K DG  FI
Sbjct: 1   MLLKDLTK---QEIDSAAGDGPDGAGALTISGLTADSRAVEPGFVFAALKGAKVDGAQFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  GA AI +  A  + D         P++  ++ R+ L+L A+   G+ PE ++AV
Sbjct: 58  EQAVDAGAAAI-LIDADRIDDDIRKKAKQVPLIAANDARRELALMAAAFAGRQPEKMVAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVA FV+QI + +GL S  +G   T+ S+      LTTP P+ L + L  L+ 
Sbjct: 117 TGTAGKTSVAVFVRQIFEYAGLVSASLGTIGTVTSTGQSYGGLTTPDPVSLHEDLKRLAE 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH ++EASSHGLDQHRLDG++++A  FTNLGRDH+DYH T + Y  AK+RLF +LLP
Sbjct: 177 DGITHAAMEASSHGLDQHRLDGVRIVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLP 236

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   +I  +  ++  V++ A   G +  + G+ G+ + ++ V      Q + +      
Sbjct: 237 DDGVVVIDPEAQFADRVLEVAKERGLKTFTTGFFGEDLKVRSVQPEGFSQVLELETAEGV 296

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F    PL G+FQV NAL+AAGL IA G+     LE L  L   PGR E VGT   G  ++
Sbjct: 297 FSVALPLAGDFQVSNALIAAGLAIAAGVPLQTALEALTVLRGAPGRIEHVGTRENGALVF 356

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L  +R    GR+I VFGCGGDRD GKRP+MG+I+  LAD++IVTDDN
Sbjct: 357 VDYAHKPEALENVLAALRPFAPGRLISVFGCGGDRDAGKRPLMGEISARLADVSIVTDDN 416

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PR+E+P+ IR EI+   P  +E G+R  AIR A++ML + DVL VAGKGHET  IV   E
Sbjct: 417 PRTENPDSIREEIVAACPAALEIGDRALAIRQAVKMLQEGDVLCVAGKGHETGQIVGT-E 475

Query: 480 KKMSVDCDIIREILG 494
                D + I++ L 
Sbjct: 476 VLPFSDHEEIQKALA 490



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 172/471 (36%), Gaps = 38/471 (8%)

Query: 7    IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            +  DF E ++      +      I  +S DSR IQ G  F AI G   DGH F   A+  
Sbjct: 788  LLSDFLEAVDGDVHGDLAD---DITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVEA 844

Query: 67   GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            GA   VVS     +     +      + VD+  K L         +    I+AVTG+ GK
Sbjct: 845  GASVAVVSREKLGE-----LPEGGRYVAVDDVLKALERLGVAARARSKARIIAVTGSVGK 899

Query: 127  SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
            +     ++    +SG++   +               +  +   +   L+ + +     + 
Sbjct: 900  TGTKEALRLCLSKSGITHAPV--------------ASFNNHWGVPLTLARMHADTEFGIF 945

Query: 187  VEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                +H G     +  ++      T +   H++   + +    AK  +F  + P    AI
Sbjct: 946  EIGMNHRGEITPLVKMVRPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEP-GGVAI 1004

Query: 246  IYADDAYSKEVMKRAHNAGCR-VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +  D+     +   A  AG + ++S G Q G     KKV    +   +  ++ G++  + 
Sbjct: 1005 LNRDNRQYDLLRYLAAVAGVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYK 1064

Query: 304  FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--- 360
               PG   V N+L      + +G + A     L ++    GR      +  GG   +   
Sbjct: 1065 IGAPGAHHVINSLGVLTGVMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDE 1124

Query: 361  DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV 415
             Y     S+   +  +  +    +GR I V G   +       +   +A  L+ A I IV
Sbjct: 1125 SYNANPASMRAAINLVAGLPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIV 1184

Query: 416  TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +   +       G   + E  +++E  +  +  +   D+++V G
Sbjct: 1185 YCVGTHMKVLWERLPAQTRG--AYSETSDKLE--KDLLSEVRPNDIVMVKG 1231


>gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
 gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
          Length = 494

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 180/481 (37%), Positives = 269/481 (55%), Gaps = 2/481 (0%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D  + ++ L +     R+  +  ++ DSR ++ G++F A+ G+   G  FI  AI +GA 
Sbjct: 3   DHRKTLSDLGLTASGGRKADVTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERGAT 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AI+   A +         S+  +++ D+ R+ L+  A+   G  P  ++AVTGT+GK+SV
Sbjct: 63  AILTDPAGARLAADVPSASDVAVVLADDPRQTLAFAAALWSGGQPNTMIAVTGTNGKTSV 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           ++F +QI    G ++  +G T    ++      TTP PI L + L+  +S GVTH ++EA
Sbjct: 123 STFCRQIWVEMGYAAANLGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAMEA 182

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGLDQ RLDG++++A  FTN  +DH+D+H+T +AYF AKM LF  +L  +S A++  D
Sbjct: 183 SSHGLDQRRLDGVRIMAAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVVNLD 242

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D    EV + A++ G  V+ VG  +   + L         Q +    EGK +     L G
Sbjct: 243 DPKGPEVAEIAYDLGIDVIGVGRSEHADLQLLAQWFDATGQDLRFDFEGKTYVKRLNLIG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  N L+AA L IA G D+  V + L  L  V GR E   T   G  ++VDYAHT ++
Sbjct: 303 GFQADNVLLAAALVIACGADADEVFDTLPHLTTVRGRMELAATRDNGAAVFVDYAHTPDA 362

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +   L  +R    GR+I + G GGDRD  KRP+MG+ A+  AD+  VTDDNPRSEDP  I
Sbjct: 363 VATALSAMRPHVMGRLIAIIGAGGDRDATKRPLMGEAAMREADLVFVTDDNPRSEDPAVI 422

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           R  ++ G P   E G+R EAI   ++ L   D L++AGKGHET   + + +     D + 
Sbjct: 423 RTAVMLGAPEATEVGDRAEAILRGVDALRPGDALLIAGKGHETGQTIGD-DVFPFNDVEQ 481

Query: 489 I 489
            
Sbjct: 482 A 482


>gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
 gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
          Length = 493

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 263/475 (55%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +         I  ++ DSR ++ G++F A+ G+   G  FI  A+  GA A++  
Sbjct: 8   LSSLGLTAKGEANPLITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         +   ++V D  R+ L+  A+  +G  P  ++AVTGT+GK+SV++FV+
Sbjct: 68  ATGAAMAADLMASAGVAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GLS+  +G T    ++      TTP PI L +AL+  ++ G+TH ++EASSHGL
Sbjct: 128 QIWIEMGLSAVNLGTTGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH T  AYF+AK  LF  +LP++  A+I  DD    
Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGI 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   GC VLSVG  G  +HL         Q +     GK +     L G FQ  N
Sbjct: 248 DMAAIARARGCEVLSVGRDGGDLHLTGQRFDATGQDLRFDWRGKTYQKRLNLIGGFQADN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G   A V + +  L  V GR +   T   GG ++VDYAHT +++   LK
Sbjct: 308 VLLACGLVIACGAKPADVFDTIPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAISTALK 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A   AD+  VTDDNPRSEDP  IRA +I 
Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDTTKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVIA 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   I+ +   D L++AGKGHET   + + +     D +  
Sbjct: 428 GAPDATEVGDRAEAILRGIDAIGPGDALLIAGKGHETGQTIGD-DVLPFDDVEQA 481


>gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum F str. 230613]
          Length = 483

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/495 (33%), Positives = 269/495 (54%), Gaps = 21/495 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLGYSFIKEYKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ +S  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G  +  I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKN----AQNSVI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLF 304
             DD+Y ++V+K+A       ++ G + K   LK      + + V      + +      
Sbjct: 234 NIDDSYGEKVLKKALGNK---ITYGVE-KNCDLKAENLHMHSRGVEFDTIFKNEKETIAL 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYA 363
            +PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G  + VDYA
Sbjct: 290 NIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP+ I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +    
Sbjct: 410 DPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKDKTIH 469

Query: 482 MSVDCDIIREILGLI 496
              + ++I E++  I
Sbjct: 470 -FDEREVIEELIKEI 483


>gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
 gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
          Length = 486

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 228/494 (46%), Positives = 316/494 (63%), Gaps = 14/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D+    FPEL N+L +  +     +I  +++DSR    G +FVA+ G K DG  ++
Sbjct: 1   MNLRDISGTAFPEL-NELLLSEIGA--IEIGGITADSRKAAPGSLFVAVAGTKADGAAYV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                       V+           + ++ P+L V + R +LSL ASR YGK PE ++AV
Sbjct: 58  KD---------AVAKGAVAVVSGHAVDADVPVLAVTDPRLYLSLAASRFYGKQPETMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASFV+QI   +G ++ QIG T  I+   +D    TTP P+ L   L+ L++
Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAA 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL A  FTNLGRDH+DYH T + Y  AKMRLF+ L+ 
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + ++ A +AG  V +VG +G ++ LK+V    +KQ + +  +G  
Sbjct: 229 KGAPAVIFADDPWSDKAIRAAADAGLNVRTVGRKGDYLTLKRVEHFRHKQLIEVHHDGVI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PL G+FQV NALVAAGL ++ G+ +A  ++ LEKL    GR E VG    G   Y
Sbjct: 289 HEVDIPLAGDFQVANALVAAGLAMSTGVSAATAMKALEKLIGAAGRLELVGQTKNGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  TSGRII VFGCGGDRD+GKRPIMG++A  L+DI IVTDDN
Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSED   IR+E++   PG +E G+R EAIR A+ +L+  D L+VAGKGHE   IV +  
Sbjct: 409 PRSEDAATIRSEVMAAAPGALEIGDRAEAIRHAVSLLSNGDTLIVAGKGHEEGQIVGSVT 468

Query: 480 KKMSVDCDIIREIL 493
                D + +R  L
Sbjct: 469 LP-FSDHEQVRTAL 481


>gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 483

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/495 (32%), Positives = 267/495 (53%), Gaps = 21/495 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    ++  +++I ++  DSR ++ G +F+ I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLGYSFIKEDKKEIEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ AS  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----ELSYYKDCTIIKVPDSRKALAIMASNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G  +  I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKN----AQNSVI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLF 304
             DD+Y ++V+K+A       ++ G + K   LK      + + V      + +      
Sbjct: 234 NIDDSYGEKVLKKALGNK---ITYGVE-KNCDLKAENLHMHSRGVEFDTIFKNEKETIAL 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYA 363
            +PG++ +YNAL + G C+  GI    + E L  +  VPGR E V  N   G  + VDYA
Sbjct: 290 NIPGKYNIYNALGSIGACLLEGIPLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP  I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +    
Sbjct: 410 DPTLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKDKTIH 469

Query: 482 MSVDCDIIREILGLI 496
              + ++I E++  +
Sbjct: 470 -FDEREVIEELIKEV 483


>gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 483

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/495 (33%), Positives = 269/495 (54%), Gaps = 21/495 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLEYSFIKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ +S  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G  +  I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKN----AQNSVI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLF 304
             DD+Y ++V+K+A       ++ G + K   LK      + + V      + +      
Sbjct: 234 NIDDSYGEKVLKKALGNK---ITYGVE-KNCDLKAENLHMHSRGVEFDTIFKNEKETIAL 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYA 363
            +PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G  + VDYA
Sbjct: 290 NIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP+ I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +    
Sbjct: 410 DPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKDKTIH 469

Query: 482 MSVDCDIIREILGLI 496
              + ++I E++  I
Sbjct: 470 -FDEREVIEELIKEI 483


>gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
 gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus subtilis subsp. natto BEST195]
 gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
          Length = 494

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/479 (33%), Positives = 238/479 (49%), Gaps = 25/479 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++ +I  +  DSR ++ G +FV + G   DGH F  +A+  GA AIV      +      
Sbjct: 20  QDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV------ 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
              N P+++V  + + LS+ +   YG+  + +  + +TGT+GK+S    V +I +++G  
Sbjct: 74  ---NVPVIIVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     I       + TTP  + L K    ++ + V    +E SSH L   R+ G 
Sbjct: 131 TGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGRVHGC 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVM 257
                 FTNL +DH+DYH+T   Y +AK  LF +L           A++ ADD  S    
Sbjct: 191 DYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYFE 250

Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           K        + + G +    +  K +          +            L G+F VYN L
Sbjct: 251 K---VTAAHISTYGIKNDADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNVYNVL 307

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   CIA GI   ++ E +E+LH V GRFE V    +   + VDYAHT +SLE +L+  
Sbjct: 308 AAVATCIAAGIPFEIITEAVEELHGVRGRFELVN-QQQEFPVIVDYAHTPDSLENVLETC 366

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T G++ VV GCGGDRD+ KRP M KIA++LAD  I T DNPRSEDP  I  ++  G+
Sbjct: 367 RDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDMEAGV 426

Query: 437 PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +    NR +AI  AI    K DV+++AGKGHET   + N E     D ++    +
Sbjct: 427 ENAYYHSIANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGN-ETFDFDDAEVAARAI 484


>gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
 gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
          Length = 483

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 260/501 (51%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I  V  DSR  +  ++F+AI G K DG L++
Sbjct: 1   MKLIDILKGVNCEIKGD--------PNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+VV                   ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAIAVVVDREIKE-------YPGITTVLVEDARAAMAKIASNFYNNPTTKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G     I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L   R++  +     FTNL +DH+D+H   + Y   K +LF+  
Sbjct: 166 VNKGVKYVVMEVSSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFK-- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +  ++I  DD YS  +++   ++  +VL+ G +   ++  K +    +  +  + +E
Sbjct: 224 -MAKRASVINIDDKYSSMMIE---SSKAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIE 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K  +    +PG F VYNAL A  +   +GI    V E L ++  V GRFE V T  +  
Sbjct: 280 DKKEEISLKIPGLFSVYNALAAITVADFLGISLRSVREALSQVT-VKGRFEPVET-GKDF 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++DYAHT + ++ +++ ++   +GR I++FG GGDRD+ KRP+MG+IA   AD  I+T
Sbjct: 338 YVFIDYAHTPDGIQNMMEALKEYKAGRKILLFGAGGDRDRIKRPLMGEIAGKYADFCILT 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSE+P +I ++I  GI      ++   NR EAIR A+    K DV+++AGKGHET 
Sbjct: 398 SDNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKGHETY 457

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ N       + +I++EIL
Sbjct: 458 QIIGNKVIP-FDEREIVKEIL 477


>gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum H04402 065]
          Length = 483

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 269/495 (54%), Gaps = 21/495 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    M+  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLEYSFMKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ +S  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G  +  I +   ++  TTP  I L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKESIFTNLTQDHLDFHKTFENYFNSKLILFKN----AQNSVI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLF 304
             DD+Y ++V+K+A       ++ G + K   LK      + + V      + +      
Sbjct: 234 NIDDSYGEKVLKKALGNK---ITYGLE-KNCDLKAENLHMHSRGVEFDTIFKNEKETIAL 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYA 363
            +PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G  + VDYA
Sbjct: 290 NIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+E
Sbjct: 350 HTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTE 409

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP+ I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ +    
Sbjct: 410 DPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKDKTIH 469

Query: 482 MSVDCDIIREILGLI 496
              + ++I E++  I
Sbjct: 470 -FDEREVIEELIKEI 483


>gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-63q42]
 gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile ATCC 43255]
          Length = 484

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 238/505 (47%), Gaps = 30/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL D        +I  L I  ++      IN V  DSR +  G +F+ I G   DGH +
Sbjct: 1   MKLND--------IIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I  AI +GA A +V     ++            + V +TRK ++  A   Y    +   +
Sbjct: 53  IKDAIEKGASAFLVEEDVEIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S+ + + +I   +      IG            +  TTP  I L    + 
Sbjct: 105 IGVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNN 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +LF +
Sbjct: 165 MLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFK 224

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
                   II  DD   K++ +          + G   K     + + +  +     +  
Sbjct: 225 TTMAN---IINIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLIT 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +     P+PG F VYN L     C  +GI   +  E L   + V GRFE V  N +G
Sbjct: 282 PSYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I    +D+ I+
Sbjct: 341 ISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCII 400

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+E+PE I  +I+ GI      +    +R +AI  AI M  K DV+++ GKGHET
Sbjct: 401 TSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+    K    D ++  E L  +
Sbjct: 461 YQIIGK-VKHHFDDKEVANECLSKM 484


>gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-23m63]
 gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
 gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
          Length = 484

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 159/505 (31%), Positives = 237/505 (46%), Gaps = 30/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL D        +I  L I  ++      IN V  DSR +  G +F+ I G   DGH +
Sbjct: 1   MKLND--------IIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I  AI +GA A +V     ++            + V +TRK ++  A   Y    +   +
Sbjct: 53  IKDAIEKGASAFLVEEDVEIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S+ + + +I   +      IG            +  TTP  I L    + 
Sbjct: 105 IGVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNN 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +LF +
Sbjct: 165 MLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFK 224

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
                   II  DD   K++ +          + G         + + +  +     +  
Sbjct: 225 TTMAN---IINIDDEGGKKIYENIKGINVPCYTYGVDTNADFMARDIKSDSDGVSYRLIT 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +     P+PG F VYN L     C  +GI   +  E L   + V GRFE V  N +G
Sbjct: 282 PSYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I    +D+ I+
Sbjct: 341 ISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCII 400

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+E+PE I  +I+ GI      +    +R +AI  AI M  K DV+++ GKGHET
Sbjct: 401 TSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAISEAISMAKKDDVVIITGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+    K    D ++  E L  +
Sbjct: 461 YQII-GKVKHHFDDKEVANECLSKM 484


>gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate
           ligase-like protein [polymorphum gilvum SL003B-26A1]
 gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase, putative-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 489

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 205/484 (42%), Positives = 292/484 (60%), Gaps = 4/484 (0%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L   L + P       ++ +++DSR ++ G++F A+ G   DG  F+P+A+ QGA A
Sbjct: 3   LDSLAADLGL-PHPPPTLSVSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAVA 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +  +    + T+  + P+LV  + R+ L+L A+R YG+ P  ++AVTGTSGK+SVA
Sbjct: 62  VLTDAQGAAA-LAGTMPDSVPVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVA 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            FV+QI + +G +S  +G   T++S  +    LTTP P+ L   L+ L+ +G+TH ++EA
Sbjct: 121 HFVRQIFEHAGHASASLGTIGTVTSRGRAYGGLTTPDPVSLHAELARLADEGITHAALEA 180

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL+QHRLDG++L+AG+FTNLGRDH+DYH T++ Y  AK+RLF +LLP     ++   
Sbjct: 181 SSHGLEQHRLDGVRLVAGAFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPG 240

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +  +  V+  A   G  + +VG +G  + L  +      Q++T+     D+    PL G 
Sbjct: 241 ERCADRVLAVARERGLHIFTVGERGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAGR 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           FQV NAL+AAGL I  G  +  VL  LE L   PGR E VG  + G  ++VDYAH  ++L
Sbjct: 301 FQVSNALIAAGLAITAGEATGAVLRALEDLEGAPGRLELVGRKANGALVFVDYAHKPDAL 360

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  +R  T GR+ VV G GGDRD GKRP+MG  A   AD+ IVTDDNPRSEDP  IR
Sbjct: 361 ENALAALRPFTCGRLFVVIGAGGDRDPGKRPLMGAAAARHADVVIVTDDNPRSEDPAAIR 420

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             ++ G P  +E G+R  AI  A+  L   DVL VAGKGHET  IV +       D D +
Sbjct: 421 KAVLAGAPDALEIGDRGAAIAEAVARLEAGDVLCVAGKGHETGQIVGD-TVLPFSDHDAV 479

Query: 490 REIL 493
           R  L
Sbjct: 480 RAAL 483


>gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
 gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
          Length = 486

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 204/501 (40%), Positives = 284/501 (56%), Gaps = 27/501 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL  + F               +  I  V++DSR + AGW+F A+ G K DG  F  
Sbjct: 4   RLSDLFNRPFA-------------NDSVIAGVTADSRKVTAGWLFAALPGTKVDGRDFAE 50

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+A+GA AI+      L+          P++  ++ R+  +L ++  +GK P   +AVT
Sbjct: 51  GAVAKGAAAILA-PEGGLEGL------GVPVVRSEDARRAYALASAAFWGKQPAMCVAVT 103

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-------QDNRLTTPSPIYLAKAL 174
           GT+GK+SVA F +QI  + G  +  +G    + S A           LTTP    +A+ +
Sbjct: 104 GTNGKTSVAGFCRQIFAQLGHKAASMGTLGVVVSEAGQPDQQLTPPGLTTPDAGDVAEMI 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L+  GVTH+++EASSHG+DQ R+DG+KL A +FTN  +DH+DYH + +AY  AK+RLF
Sbjct: 164 ARLADMGVTHLALEASSHGVDQRRVDGVKLKAAAFTNFTQDHLDYHGSMEAYRAAKLRLF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L P  + A++ AD          A  +G  V SVG  G+ + L         Q + + 
Sbjct: 224 DTLTPAGATAVLNADSEAFPTFASTAVTSGQSVFSVGEDGQGLRLISRTPTPAGQDLVVE 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G+ +D   PL G FQ  N LVAAGLC+A G D   VL+ LE L    GR + VG    
Sbjct: 284 AQGRTYDIRLPLAGAFQASNVLVAAGLCVAAGEDVGKVLKALENLEGAAGRLQRVGRGPH 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GG  YVDYAHT + L+ +L+ +R  T G++I VFG GGDRD+GKRP+MG I   LADIAI
Sbjct: 344 GGEAYVDYAHTPDGLQTVLEALRPHTRGKLIAVFGAGGDRDRGKRPLMGAIGAKLADIAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           VTDDNPRSEDP  IRA I+   PG  E G+R  AIR A+++L + DVLVVAGKGHE   I
Sbjct: 404 VTDDNPRSEDPASIRAAILEAAPGAREIGDRRAAIRAAVDLLAEGDVLVVAGKGHEQGQI 463

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           V           + +  + G+
Sbjct: 464 VAGVVHPFDDVAETLAALEGV 484


>gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 483

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 260/501 (51%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I+ V  DSR  +  ++F+AI G K DG  ++
Sbjct: 1   MKLIDILKGVNCEIKGD--------PNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V                    ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVTDREIKE-------YPGITTVLVEDARAAMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G     I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  +R+D  +     FTNL +DH+D+HQ  + Y   K +LF+  
Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKGKLFK-- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +S ++I  DD YS  +++   ++  +VL+ G +   ++  K +    +  +  + +E
Sbjct: 224 -MAKSASVINIDDKYSSMMIE---SSKAKVLTYGIKDFAYVMAKDIRNSLSGVKFKVQIE 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K  +    +PG F VYNAL A  +   +GI    V E L ++  V GRFE V T  +  
Sbjct: 280 DKKEEISLKIPGIFSVYNALAAITVADFLGISLRSVREALSQVT-VKGRFELVET-GKDF 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT + ++ I++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T
Sbjct: 338 YVIIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILT 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSEDP +I ++I  GI      ++   NR EAI  A+    K DV+++AGKGHET 
Sbjct: 398 SDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKGHETY 457

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ +       + +I++EIL
Sbjct: 458 QIIGDKVIH-FDEREIVKEIL 477


>gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile 630]
 gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile]
          Length = 484

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 239/505 (47%), Gaps = 30/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL D        +I  L I  ++      IN V  DSR +  G +F+ I G   DGH +
Sbjct: 1   MKLND--------IIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I  AI +GA A +V    +++            + V +TRK ++  A   Y    +   +
Sbjct: 53  IKDAIEKGASAFIVEEDVAIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S+ + + +I   +      IG            +  TTP  I L    + 
Sbjct: 105 IGVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNN 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +LF +
Sbjct: 165 MLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFK 224

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
                   II  DD   K++ +          + G   K     + + +  +     +  
Sbjct: 225 TTMAN---IINIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLIT 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +     P+PG F VYN L     C  +GI   +  E L   + V GRFE V  N +G
Sbjct: 282 PSYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I    +D+ I+
Sbjct: 341 ISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCII 400

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+E+PE I  +I+ GI      +    +R +AI  AI M  K DV+++ GKGHET
Sbjct: 401 TSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+    K    D ++  E L  +
Sbjct: 461 YQIIGK-VKHHFDDKEVANECLSKM 484


>gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 483

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 260/501 (51%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I+ V  DSR  +  ++F+AI G K DG  ++
Sbjct: 1   MKLIDILKGVNCEIKGD--------PNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V                    ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVTDREIKE-------YPGITTVLVEDARAAMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G     I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  +R+D  +     FTNL +DH+D+HQ  + Y   K +LF+  
Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKSKLFK-- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +S ++I  DD YS  +++   ++  +VL+ G +   ++  K +    +  +  + +E
Sbjct: 224 -MAKSASVINIDDKYSSMMIE---SSKAKVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIE 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K  +    +PG F VYNAL A  +   +GI    V E L ++  V GRFE V T  +  
Sbjct: 280 DKKEEISLKIPGIFSVYNALAAITVADFLGISLRSVREALSQVT-VKGRFELVET-GKDF 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT + ++ I++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T
Sbjct: 338 YVIIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILT 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSEDP +I ++I  GI      ++   NR EAI  A+    K DV+++AGKGHET 
Sbjct: 398 SDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKGHETY 457

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ +       + +I++EIL
Sbjct: 458 QIIGDKVIH-FDEREIVKEIL 477


>gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
 gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
          Length = 500

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/512 (32%), Positives = 263/512 (51%), Gaps = 40/512 (7%)

Query: 1   MKLQDLIYKDF-PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+LQDL+       ++ ++S         ++ +V++DSR    G +F+A+ G+  DGH F
Sbjct: 1   MRLQDLVSALLHVRVVGEISA-------VEVTDVTADSRTAGPGSLFIALRGHTVDGHAF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           + +A   GA A VV                 P +VV +TR+  ++ A+  +        +
Sbjct: 54  VDEARRSGAVAAVVEDCLDTP---------LPQIVVPDTRRAAAVLAAVFFRHPSRAMRV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V   +  + +  G  +  IG   T I   +     TTP  + L +  + 
Sbjct: 105 IGVTGTNGKTTVTHLIDHLLRAGGARTGLIGTIQTRIGDRSSGAVNTTPEAVELQRLFAQ 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+H  +E SSH L+  R+ G +     FTNL +DH+D+H + +AY  AK +LF  
Sbjct: 165 MRDAGVSHAVMEVSSHALELDRVAGTRFHTAVFTNLTQDHLDFHGSMEAYREAKGKLFAR 224

Query: 237 LLPKES-------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNK 288
           L  +          A++  DD   K + ++      + ++ G      +  ++V      
Sbjct: 225 LGNEYGDTRADQAFAVVNLDDPVGKWMARQ---TTAQTVTYGVDRPADLRAREVEVDTRG 281

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +    +EG+      PLPG F VYN L A G     G+D   + + L ++  VPGR E 
Sbjct: 282 VRFVAEIEGRRTRVHVPLPGRFSVYNTLAAMGAGWIQGLDLDWMADQLARVSGVPGRMER 341

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +   + VDYAHT +SL+ +L+ +R + SGR+IVVFGCGGDRD+ KRP+MG+IA  
Sbjct: 342 VDA-GQPFGVVVDYAHTPDSLDNVLQALREVASGRLIVVFGCGGDRDRTKRPLMGRIAYT 400

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDV 461
            AD AI+T DNPR+EDPE+I  +I  G+         +    +R EAIR AI +  ++DV
Sbjct: 401 RADYAILTSDNPRTEDPERILDDIEAGLREIGADTSRYERISDRTEAIRRAIHLAGEKDV 460

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHET  I+    K    D    R+ L
Sbjct: 461 VLIAGKGHETYQIIGR-RKFPFDDRVEARKAL 491


>gi|306844335|ref|ZP_07476927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
 gi|306275407|gb|EFM57148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
          Length = 488

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG  F 
Sbjct: 1   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAVEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 466

Query: 480 KKMSV 484
              S 
Sbjct: 467 LPFSD 471


>gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
          Length = 490

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/504 (32%), Positives = 243/504 (48%), Gaps = 31/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     E +         + +  I  +  DSR ++ G +FV I G   DGH F 
Sbjct: 1   MKLTKLLTYLMTEPVQN------DFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA AIV      +         + P+++V  +++ LS+ +   YG+  + +  +
Sbjct: 55  QKAAENGAAAIVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+S    V +I +++G  +  IG     I       + TTP  + L K    +
Sbjct: 106 GITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + + V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF +L
Sbjct: 166 NDEHVETAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQL 225

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
                  K   A++ ADD  S    +        +L+ G +    +  K++         
Sbjct: 226 GGSFNHEKPKRAVLNADDKASAYFER---VTAAHILTYGIENDADVMAKQIEISAQGTSF 282

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L AA   IA G+    +   LE+L  V GRFE V  
Sbjct: 283 ELVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNH 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N +   + VDYAHT +SLE +L   + +T G++ VV GCGGDRD+ KRP M +IA+ +AD
Sbjct: 343 N-QPFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIAD 401

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPRSEDP  I  ++  G+ G  +    NR +AI  AI    K DV+++AGKGH
Sbjct: 402 EPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + N E     D ++    +
Sbjct: 462 ETYQQIGN-ETFDFDDAEVAGRAI 484


>gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens LL3]
          Length = 490

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/504 (32%), Positives = 243/504 (48%), Gaps = 31/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     E +         + +  I  +  DSR ++ G +FV I G   DGH F 
Sbjct: 1   MKLTKLLTYLMTEPVQN------DFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA AIV      +         + P+++V  +++ LS+ +   YG+  + +  +
Sbjct: 55  QKAAENGAAAIVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+S    V +I +++G  +  IG     I       + TTP  + L K    +
Sbjct: 106 GITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + + V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF +L
Sbjct: 166 NDEHVDTAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQL 225

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
                  K   A++ ADD  S    +        +L+ G +    +  K++         
Sbjct: 226 GGSFNHEKPKRAVLNADDKASAYFER---VTAAHILTYGIENDADVMAKQIEISAQGTSF 282

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L AA   IA G+    +   LE+L  V GRFE V  
Sbjct: 283 ELVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNH 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N +   + VDYAHT +SLE +L   + +T G++ VV GCGGDRD+ KRP M +IA+ +AD
Sbjct: 343 N-QPFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIAD 401

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPRSEDP  I  ++  G+ G  +    NR +AI  AI    K DV+++AGKGH
Sbjct: 402 EPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + N E     D ++    +
Sbjct: 462 ETYQQIGN-ETFDFDDAEVAGRAI 484


>gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 483

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 213/499 (42%), Positives = 286/499 (57%), Gaps = 29/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L DL+ +D                +  I  V++DSR + +G +FVA+ G   DG  FI
Sbjct: 4   IRLSDLLRRDVA-------------ADPVITGVTADSRKVTSGSLFVALPGTAADGRAFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA++QGA A++             +RS        + R+  +L A   YG  P   +AV
Sbjct: 51  PQALSQGAAAVLAPQDTPDGAAPLLVRSG-------DVRRAYALAARGFYGAQPATCVAV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST------ISSFAQDNRLTTPSPIYLAKAL 174
           TGT+GK+SVA+F +QI    G+ +  +G          I+       LT+P     A+ L
Sbjct: 104 TGTNGKTSVAAFCRQIWAALGIKAASMGTLGVVAQSGSITESLTPPGLTSPDAGDAARLL 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L+  GVTH+++EASSHG+DQ RLDG+ L A +FTNL +DH+DYH    AY  AK+RLF
Sbjct: 164 ATLAEGGVTHLALEASSHGIDQRRLDGVTLKAAAFTNLTQDHLDYHGDMAAYRAAKLRLF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E LLP+   A++ AD          +  +G  V+ VG +G+ + L +  A+   Q++ + 
Sbjct: 224 ESLLPRGRTAVLNADSDAYNAFAAASIMSGLGVMGVGERGRDLSLIERRAVPEGQRLILD 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V G   D L PL G FQ  NALVAAGLCIA G D+A VL  LEK+    GR + V     
Sbjct: 284 VRGDRHDVLLPLAGAFQASNALVAAGLCIAAGEDAARVLHALEKITGAAGRLQRVSGGR- 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G  YVDYAHT + LE +LK +R   +GR+IVVFG GGDRD+GKRP+MG IA  LAD+AI
Sbjct: 343 -GEAYVDYAHTPDGLETVLKALRPHATGRLIVVFGAGGDRDKGKRPLMGGIAGRLADVAI 401

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           VTDDNPRSEDP  IRA++  G P   E G+R  AIR A+ M+   DV+VVAGKGHE   I
Sbjct: 402 VTDDNPRSEDPAVIRAQVRAGCPSAREVGDRRAAIREAVAMMRDGDVVVVAGKGHEQGQI 461

Query: 475 VTNGEKKMSVDCDIIREIL 493
           V  G      D   + E L
Sbjct: 462 V-GGTTHPFDDATELAEAL 479


>gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 493

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 157/477 (32%), Positives = 240/477 (50%), Gaps = 13/477 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            K+ E+  DSR  + G +FVA+ G++ DG  +I QAI +GA A++  +  + Q       
Sbjct: 17  IKLTEMILDSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLSEADNADQHLQIEWH 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P++      + LS  A   Y    +   ++ VTGT+GK++++  + Q  +  G +S 
Sbjct: 77  QDVPVIQFYQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQLLAQWTKLLGHTSA 136

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +    ++   TT S + +  +L+    QG   V++E SSHGL QHR++ +  
Sbjct: 137 VMGTIGNGLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVSSHGLVQHRVEALDF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL RDH+DYH T + Y  AK RLF EL PK     I ADD    E +    +A 
Sbjct: 197 DVAIFTNLSRDHLDYHLTMENYAAAKKRLFTELKPKHQI--INADDPVGVEWLAELGSAV 254

Query: 265 CRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  +   Q K++   K+   +    +       + +    L GEF V N L+    
Sbjct: 255 AVSCREDFHPTQKKWLKATKITFNNKGAHIQFESSWGNGELHSGLIGEFNVSNLLLVFAT 314

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++  D   +L     L  V GR E + T S      VDYAHT ++LE  L+  R    
Sbjct: 315 LLSLDYDFDELLRTASSLTGVCGRMEML-TQSNQPTAIVDYAHTPDALEKALQAARLHCQ 373

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PG 438
           G++  VFGCGGDRD GKRP+M  IA  LAD  IVTDDNPR+E  EKI  +I+ G      
Sbjct: 374 GQLWCVFGCGGDRDTGKRPLMAHIAERLADKVIVTDDNPRTEAAEKIMQDILLGFEDQSA 433

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                +R +AI  AIE  + +D +++AGKGHE   I+   +K    D +++++   +
Sbjct: 434 VKILHDREQAIAFAIEQADPEDTILIAGKGHEDYQIIGK-QKHHFSDQEMVKKYFDV 489


>gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 484

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 170/502 (33%), Positives = 266/502 (52%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L D++ KD    I + ++      +  I  +  DSR+ + G +FVAI G K DG  +I
Sbjct: 1   MRLADVL-KDIEYTIVKGNV------DVDIRGICYDSRNSKDGSMFVAIKGFKSDGADYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA A++V       D   +I  +  ++ V NTRK L+  AS  YG   + +  +
Sbjct: 54  GDAIERGAVAVLV-------DGEISIDKDITLIKVQNTRKSLAKIASNYYGDPSKQLFLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +        IG     I         TTP  + L + L  +
Sbjct: 107 GVTGTNGKTSVTYMIKSILESQNNKVGLIGTIQNMIGDKVYPTERTTPESLDLQRYLRLM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +V +E SSH L  +R+D        FTNL +DH+D+H+T   Y NAK +LF   
Sbjct: 167 VDEGVKYVVMEVSSHSLALNRVDECDFDIAVFTNLTQDHLDFHKTMDDYANAKAKLFR-- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              ++  +I  DD YS  +++   N+  +V++ G +   +I  K +       + T+ +E
Sbjct: 225 -MAKTACVINIDDDYSSLIIE---NSNAKVVTYGIKDYAYIMAKDIKNDIKGAKYTVQIE 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               D    +PG F VYN+L A  +   +GI    V   L+ +  + GRFE +  ++   
Sbjct: 281 DIKSDIALKIPGLFSVYNSLAAISVAFILGIPLQSVKIALKDVK-IKGRFEILDIDA-PY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT + LE ++K      +GR I++FGCGGDRD+GKRP MG++A   AD  I+T
Sbjct: 339 NVVIDYAHTPDGLENLMKAFGEYDTGRKILLFGCGGDRDKGKRPKMGEVAGKYADFVIIT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSEDP +I +EI  GI      +    NR EAI+ A+ +    D++++AGKGHET 
Sbjct: 399 SDNPRSEDPMQIISEIEMGIKNTKCPYKIIENRKEAIKYALSIAKDNDIVILAGKGHETY 458

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            ++ +       + +I++EIL 
Sbjct: 459 QVLKDRVID-FDEREIVKEILN 479


>gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
 gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
          Length = 490

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 235/485 (48%), Positives = 310/485 (63%), Gaps = 15/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG  F 
Sbjct: 3   MKLKEIAL--FNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDMAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D    TTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGNIT 468

Query: 480 KKMSV 484
              S 
Sbjct: 469 LPFSD 473


>gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 494

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/478 (32%), Positives = 233/478 (48%), Gaps = 23/478 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++ +I  +  DSR ++ G +FV + G   DGH F  +A+  GA AIV      +      
Sbjct: 20  QDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAERELDV------ 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
              + P+++V  + + LS+ +   YG+  + +  + +TGT+GK+S    V +I +++G  
Sbjct: 74  ---DVPVIIVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     I       + TTP  + L K    ++ + V    +E SSH L   R+ G 
Sbjct: 131 TGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGRVHGC 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVM 257
                 FTNL +DH+DYH+T   Y  AK  LF +L           A++ ADD  S    
Sbjct: 191 DYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYF- 249

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           ++   A      +      +  K +          +            L G+F VYN L 
Sbjct: 250 EKVTAAHISTYGIKNNADVM-AKNITITAQGTSFDLVTNKGTKHITMSLVGQFNVYNVLA 308

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A   CIA GI    +   +E+LH V GRFE V    +   + VDYAHT +SLE +L   R
Sbjct: 309 AVATCIAAGIPFETITAAVEELHGVRGRFELVN-QQQEFPVIVDYAHTPDSLENVLNTCR 367

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +T G++ VV GCGGDRD+ KRP M KIA++LAD  I T DNPRSEDP  I  ++  G+ 
Sbjct: 368 DMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDMEAGVE 427

Query: 438 G--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +    NR +AI  AI    K DV+++AGKGHET   + + E     D ++    +
Sbjct: 428 NEYYHSIANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGS-ETFDFDDAEVAARAI 484


>gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 486

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 212/497 (42%), Positives = 295/497 (59%), Gaps = 20/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L    FP+ +    I P  +  R+I  ++ DSR +    +F A+ G K DG  + 
Sbjct: 1   MRLDAL----FPDAL----IEPPAFGAREIAGLACDSRLVAKDQVFFAVPGTKADGLTYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+A+ +GA A+V   + S+   +A +      + V + R  L++ ++R Y + PE ++AV
Sbjct: 53  PEAVRRGALAVVTEQSASVPFETAAL------VKVADVRSALAIASARFYARQPETVVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI    G  +  +G    ++   A    LTTP PI L + L  L+ 
Sbjct: 107 TGTSGKTSVAAFARQIWASLGFKAASVGTLGVVAPDGASYGGLTTPDPISLHRTLDELAG 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASSHGLDQHRLD ++L A  FTNL RDH+DYH T +AYF AK+ LF  +LP
Sbjct: 167 AGVTHLALEASSHGLDQHRLDYVRLKAAGFTNLSRDHLDYHPTLEAYFQAKLLLFTHVLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   ++ AD +   EV+  A   G +V S+G+ G+ +HL +         + ++  GKD
Sbjct: 227 ADGTVVVDADSSAGHEVIDVAKARGLKVFSLGFAGETLHLLEARPEAAATLLRLTFAGKD 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G FQ  NAL+AAGLCI+ G     V   LE+L   PGR E VG   RG  I+
Sbjct: 287 WALRLPLVGSFQAANALMAAGLCISTGAAPDAVFAALERLEGAPGRLEKVG-ERRGASIF 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE  L+ +R  T  R+IV+FGCGGDRD GKRP+MG+IA  LAD  IVTDDN
Sbjct: 346 VDYAHKPDALEKALQALRPFTQKRLIVIFGCGGDRDAGKRPLMGEIAARLADHVIVTDDN 405

Query: 420 PRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PRSEDP+ IR  I+ G    P   E G+R  AI++ I ML   D+L++AGKGHET  I+ 
Sbjct: 406 PRSEDPDLIRKAILQGAGSGPHIREIGDREAAIKSGIGMLEPGDLLLIAGKGHETGQILA 465

Query: 477 NGEKKMSVDCDIIREIL 493
           +       D D  R  L
Sbjct: 466 DRTLP-FSDRDCARAAL 481


>gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-66c26]
 gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CIP 107932]
 gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-76w55]
 gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-97b34]
 gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-37x79]
 gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CD196]
 gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile R20291]
 gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-32g58]
 gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile CD196]
 gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile R20291]
          Length = 484

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 159/505 (31%), Positives = 238/505 (47%), Gaps = 30/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL D        +I  L I  ++      IN V  +SR +  G +F+ I G   DGH +
Sbjct: 1   MKLND--------IIQGLDIINVKGELNIDINNVQYNSRKVTKGTLFICIKGFVSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I  AI +GA A +V     ++            + V +TRK ++  A   Y    +   +
Sbjct: 53  IKDAIEKGASAFLVEEDVEIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S+ + + +I   +      IG            +  TTP  I L    + 
Sbjct: 105 IGVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNN 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +LF +
Sbjct: 165 MLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFK 224

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
                   II  DD   K++ +          + G   K     + + +  +     +  
Sbjct: 225 TTMAN---IINIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLIT 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +     P+PG F VYN L     C  +GI   +  E L   + V GRFE V  N +G
Sbjct: 282 PSYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I    +D+ I+
Sbjct: 341 ISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCII 400

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+E+PE I  +I+ GI      +    +R +AI  AI M  K DV+++ GKGHET
Sbjct: 401 TSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+    K    D ++  E L  +
Sbjct: 461 YQII-GKVKHHFDDKEVANECLSKM 484


>gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 495

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 170/495 (34%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L   L+ +     ER + E++ DSR   AG +FVAIVG+  DG  +IPQAIAQG  A+
Sbjct: 4   RNLRALLAPWVADAPERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D +       P++ +    + LS  A R Y +      ++ VTGT+GK+++
Sbjct: 64  IAEADGEAEDGTIRESHGIPVIYLSQLNQRLSALAGRFYHQPGADLRLIGVTGTNGKTTI 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +      +  TT S + +   L  L SQG T  ++E
Sbjct: 124 TQLLAQWGQLLGETSAVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A +FTNL RDH+DYH   + Y  AK  LF          II A
Sbjct: 184 VSSHGLVQDRVAALPFAASAFTNLSRDHLDYHGDMEHYEQAKWLLFS--THHSGEKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + ++ +A        L   + G+++   +V    +   ++            
Sbjct: 242 DDEVGQRWLAKSPDAVAVTMEQRLPENWAGRWVSASQVDYHDSGASISFDSSWGKGVLES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVAA   +A+G    ++ +   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLVAAATMLALGYPLDVLCKTSSQLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALEAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQYADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I A+I++G+           R EA+  AI      DV++VAGKGHE   +V N    
Sbjct: 421 PRAIMADILNGMLDAGHAQAISGRAEAVTGAIMQAKPDDVILVAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 481 YS-DRVTVARLLGVI 494


>gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
 gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
          Length = 483

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 196/485 (40%), Positives = 273/485 (56%), Gaps = 14/485 (2%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS       + +   ++ DSR +  G++F A++G   DG  FI  AI  GA A++    
Sbjct: 2   KLSQIFDNAPDWEFTGLTCDSRKVAPGFVFAALLGTVSDGRDFIQAAIDNGAIAVLTDER 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                         P + V   R   +  A+  Y K PE ++AVTGT+GKSS   F++QI
Sbjct: 62  DG--------EWEIPAIKVAEPRLAFAKAAAAFYHKQPEVMVAVTGTNGKSSTVDFLRQI 113

Query: 137 CQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G    +  S A +   TTP P+ +   L+ L+++GVTH ++EASSHGL 
Sbjct: 114 WTELGHVSASVGTLGAVGPSGAVELGHTTPDPVAVQSTLAILANEGVTHCAMEASSHGLA 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R+ G++L AG F NL +DH+DYH+  + YF AKM+LF ELLP+ +PAII AD     +
Sbjct: 174 QYRMHGVQLAAGGFLNLSQDHLDYHKDFEDYFAAKMKLFSELLPEGAPAIINADSDMKDK 233

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQ 311
            +  A  A  +  +VG++G  + + ++   +  Q++ +  E     K+     PL GEFQ
Sbjct: 234 ALAIATAANLKPFTVGWRGDHLWIDEISPRNTGQKLQLQWETPEGDKETIVNLPLIGEFQ 293

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NAL AAG+ +++G D   V   +EKL  V GR E V     G  I+VD+AHT + L+ 
Sbjct: 294 ALNALAAAGIALSLGADPMAVFAAMEKLKGVKGRLELVAETQNGAGIFVDFAHTPDGLDT 353

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+  R   +GR+I VFGCGGDRD GKRPIMG+IA   AD  IVTDDNPRSEDP  IRA 
Sbjct: 354 LLRAARPHAAGRVICVFGCGGDRDAGKRPIMGEIAAKYADEVIVTDDNPRSEDPASIRAA 413

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           I+ G P   E   R  AI+  I  L K DVL++AGKGHET  I+  GE     D +    
Sbjct: 414 IMAGAPNATEIDGREAAIKEGISRLKKGDVLMIAGKGHETGQIIK-GETFPFSDHEAALT 472

Query: 492 ILGLI 496
            L  I
Sbjct: 473 ALAEI 477


>gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 498

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/509 (31%), Positives = 250/509 (49%), Gaps = 34/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+ L           ++          +  +++DSR ++ G +FVA+ G+  DGH F 
Sbjct: 1   MRLRQLFQP-------FVNFQVTNAENPDVVNITTDSRDVEPGSLFVAVRGHTVDGHRFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+ +GA A++V          A + ++ P +VV +TR + +L A RL+G       ++
Sbjct: 54  RQAVERGAVAVMVEEPV------AEVPASIPQVVVPDTRHWSALVADRLFGSPSRELRVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   V+ +   +G  +  IG     +   +     TTP  + + + L   
Sbjct: 108 GVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTVGAKLGQASWPLPNTTPEAVEVHRWLRRF 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G TH  +E SSH L + R  G+     +FTNL +DH+D+H T + Y  AK  LF  L
Sbjct: 168 VDAGATHAVMEVSSHALVERRAAGVSFACAAFTNLTQDHLDFHGTMERYAGAKALLFSRL 227

Query: 238 LPKES-------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ 289
                        A+I  DD +S  +   A  +   +L+ G +    +  + V    +  
Sbjct: 228 GNGTGDDPARSVYAVINVDDPWSSVM---AEASAAPILTYGIERAGDVRARDVRLSASGA 284

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  +      F+   PL G F VYN L A  + +  G+    + E +     VPGR E +
Sbjct: 285 RFFVDSPAGAFEIETPLIGRFNVYNTLAAVAIALVEGLTPTEIQEGIRSYPSVPGRMERI 344

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   ++VDYAHT + LE +L ++R     R++VV GCGGDRD+ KRP M ++A+ L
Sbjct: 345 D-EGQPFSVFVDYAHTPDGLENVLASVREFAPARVLVVVGCGGDRDRTKRPKMAEVAVRL 403

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD AI T DNPRSEDP  I A++  G+         E+ +R  AI  AI      DV+V+
Sbjct: 404 ADRAIFTSDNPRSEDPVAILADMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVI 463

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHE   I+   EK+   D +  R  +
Sbjct: 464 AGKGHEDYQIIGA-EKRHFDDREEARRAI 491


>gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
          Length = 493

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/473 (38%), Positives = 269/473 (56%), Gaps = 1/473 (0%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           QL +     R+  +  ++ DSR ++ G++F A+ G++  G  FI  A+  GA AI+  +A
Sbjct: 10  QLGLTARNGRQATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAILTDAA 69

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            +    +    S   +++ D+ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+FV+QI
Sbjct: 70  GAQLAATELGASEAALVISDDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATFVRQI 129

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  +  +G T    +++     TTP PI L +AL+  + QGVTH ++EASSHGLDQ
Sbjct: 130 WTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAARQGVTHAAMEASSHGLDQ 189

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RLDG+ L A  FTN  +DH+DYH T + YF AK  LF  +LP+++ A+I  D     ++
Sbjct: 190 RRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADRGVDM 249

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A    C V++VG     +HL  +      Q V     G  +     L G FQ  N +
Sbjct: 250 AAIAEARNCPVITVGRDSGDLHLGNIQVDSTGQVVCFMHHGTQYVRRLGLIGSFQAENVM 309

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +AA L IA G D   V + LE L  V GR +  GT   G  ++VDYAHT +++   LK +
Sbjct: 310 LAAALVIACGEDPQHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIATALKAL 369

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    GR+I + G GGDRD  KRP+MG+ A + AD+  VTDDNPRSEDP  IRA ++ G 
Sbjct: 370 RPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPASIRAAVLLGA 429

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           P  IE G+R EAI   ++ L   D L++AGKGHET  +V + +     D +  
Sbjct: 430 PDAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD-DVLPFDDAEQA 481


>gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia succiniciproducens MBEL55E]
 gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 488

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 159/476 (33%), Positives = 253/476 (53%), Gaps = 13/476 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            K+N ++ DSR ++ G +FVAI G+  DG  FIPQAI+ GA A++     + +    + +
Sbjct: 17  IKLNRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQ 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P++   +  + LS  A + Y    +++  + VTGT+GK++V+  + Q  Q  G    
Sbjct: 77  NQIPVISYYHLSEHLSDIADQFYKAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPA 136

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +    +    TT S I +  +L+    QG    ++E SSHGL QHR++ +  
Sbjct: 137 VMGTIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSHGLVQHRIEALHF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            AG FTNL RDH+DYH + + Y +AK RLF EL  ++    I ADD    + ++   +A 
Sbjct: 197 AAGIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQKI--INADDEIGVQWLRELPDAV 254

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               +  YQ    +  KV A+    Q   +T +           L G F V N ++    
Sbjct: 255 AVSCNPAYQPTQENWLKVTAVSFNSQGATITFNSSWGGAILTSRLIGAFNVSNLMLVLAT 314

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G     +L+ + +L  V GR E +   +    + VDYAHT ++LE  L+  R   +
Sbjct: 315 LLSLGYSLDELLKTVSQLTGVCGRMEMLHA-AHKPTVIVDYAHTPDALEKALQAARAHCT 373

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR+  VFGCGGDRD+GKRP+M ++A   AD  IVTDDNPR+ED  +I  +I+ G      
Sbjct: 374 GRLWCVFGCGGDRDRGKRPLMAQVAERFADYVIVTDDNPRTEDRHQIVQDIVAGFKRPES 433

Query: 442 KG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                +R +AIRTA++   + DV+++AGKGHE   I+ +  K    D + +++ LG
Sbjct: 434 VNIVYDREQAIRTAVQSAVENDVILIAGKGHEDYQIIGH-TKHHFSDQEAVKKYLG 488


>gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parasuis SH0165]
 gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           SH0165]
          Length = 496

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/482 (33%), Positives = 239/482 (49%), Gaps = 18/482 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SA 84
           +++N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA  ++  +   +Q       
Sbjct: 18  KELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRFAEK 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
              S   +L V N  K LS  A   YG   E +  + +TGT+GK++ A    Q     G 
Sbjct: 78  FANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGG 137

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G     +    Q+   TT S + +   L+     G    ++E SSHGL Q+R + 
Sbjct: 138 KSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAMEVSSHGLAQYRAEA 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH T + Y  AK RLF EL  K+    I ADD   ++ + +  
Sbjct: 198 LDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQV--INADDEIGRKWLAKLP 255

Query: 262 NAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        +Q    ++I  K V        +       + +    L G F V N L A
Sbjct: 256 EAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTA 315

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKN 375
               +A+G D   ++E    L+ V GR E + +         + VDYAHT ++LE  L  
Sbjct: 316 FAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDYAHTPDALEKALDA 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  VFGCGGDRD GKRP+M +IA  LAD  IVTDDNPR+EDP+ I  +++ G
Sbjct: 376 ARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRTEDPDVIFNDVMKG 435

Query: 436 I--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              P  ++  + R  AI  AI     +DV+++AGKGHE   I+   +K    D +  R+ 
Sbjct: 436 FRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWARKF 494

Query: 493 LG 494
           LG
Sbjct: 495 LG 496


>gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
          Length = 471

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 240/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  AIV  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +      ++ VTGT+GK++ +  + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTSQLLAQWSQALGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A      
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINADDEVGRRWLSQLPQAVAVSME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L  G++G ++   +V    N   +T      +      L G F V N LVA    +++
Sbjct: 239 GHLPAGWKGPWLSASQVEYHDNGANITFGSSWGEGQIESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHALAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    + DV+++AGKGHE   +V N     S D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYS-DRVTVARLLGVV 470


>gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
 gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
          Length = 509

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/521 (32%), Positives = 255/521 (48%), Gaps = 43/521 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+       IN L I      E  ++ V  +SR      +FVAI G K DGH +I
Sbjct: 1   MNLSILLKG-----INILGISGPSGSEVNVSSVCYNSRQCTPDSLFVAIRGLKSDGHEYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA+ IV            T+     ++ V+N R+ L L A   Y      ++AV
Sbjct: 56  DDAVRCGAKVIVCEKEV-------TMPPEITVVRVENGRRTLGLLARNFYADPSRCLVAV 108

Query: 121 T--GTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
              GT+GK++V   ++ I Q +G S   +G  +        +   TTP  + L + +  +
Sbjct: 109 AVMGTNGKTTVTYILESIFQAAGFSCGVLGTVNYRYPGLVMEAPNTTPESLDLQRIIREM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GVTH+  E SSH +D  R+D      G FTNL +DH+DYH+T + YF AK R F E+
Sbjct: 169 VDHGVTHLVAEVSSHAVDLRRIDDCDFDLGIFTNLTQDHLDYHKTMENYFQAKKRFFSEV 228

Query: 238 LPKESPAI-----IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
           LP           + ADD + K +++       R L+ G + K  I         +  + 
Sbjct: 229 LPGGRKQHRYAMAVNADDPWGKRLIRE-TGEISRPLTFGIEEKADIRASSFDLSLDGIRA 287

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I V    FD    L G+F +YN L A    +A+ +    +   +  ++ VPGR E V  
Sbjct: 288 EIVVGSMSFDVDTALIGKFNLYNVLAAVSASVALRVPIEAIRRGVRAMNAVPGRLEKVSG 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +++   ++VDYAHT ++L  +L+++     GRII VFGCGGDRD+GKRP+MGK+A + +D
Sbjct: 348 STQ-PDVFVDYAHTDDALRRVLQSLSPFKRGRIITVFGCGGDRDRGKRPLMGKVATNYSD 406

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTA 452
           + I+T DNPRSEDP  I  +I  GI                    G++   +R EAI  A
Sbjct: 407 LTILTSDNPRSEDPLSIIRDIEVGINSQSIPEGSSEDLSRGMTGRGYVVIPDRREAIGAA 466

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I      D++++AGKGHE   I+   ++    D  + +E L
Sbjct: 467 IRSARPSDIVLIAGKGHEDYQIIGE-KRLFFDDRAVAKEFL 506


>gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 492

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 165/493 (33%), Positives = 259/493 (52%), Gaps = 25/493 (5%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL++ + +  +   ++ ++  ++ DSR +Q G++FVAI G K DGH FI  A   GA 
Sbjct: 8   LKELLSAIDVIAISGPQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNAREAGAT 67

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A        + +    + ++  ++ V ++R+ L+L A + YG       ++ VTGT+GK+
Sbjct: 68  A-------VVVEREVEVPADLTVIKVSDSRQALALLADKFYGHPSRKMTVVGVTGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +  I ++ GL    +G     I   A     TTP  + L K ++ +  + V  V+
Sbjct: 121 TTTHLIAAIWRQVGLKPGVVGTIHNLIGEKALPVTNTTPESLDLHKLMAEMVREDVQGVA 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L  +R+ G+K     FTN+ +DH+D+H   + Y  AK +LFE        A+I
Sbjct: 181 MEVSSHALALNRVAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKLFE---KDIKYAVI 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            ADD  ++++ K +     +V + G +    +  K +         T++    +      
Sbjct: 238 NADDQAAEQLFKISRG---KVYTYGIENNADVRAKDIQVTARGVSFTVNSPWGEQRLELK 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F VYN+L A  + + +G +   V   LE +  V GRFE V    +   + VDYAHT
Sbjct: 295 LTGRFNVYNSLAAYTVGMVLGYNGMDVKAALEGVTGVAGRFELVD-QGQDFAVVVDYAHT 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R IT GR+I VFGCGGDRD+ KRPIMG+IA   +D+ +VT DNPR+EDP
Sbjct: 354 PDGLENILTTARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDLPVVTSDNPRTEDP 413

Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +KI  +I+ G+ G     ++   +R EAI  AI +    DV+V+AGKGHE   I+    K
Sbjct: 414 QKIIEDILVGLQGKDPGSYLVIADRREAINRAINLAEPGDVVVIAGKGHEDYQIIGT-TK 472

Query: 481 KMSVDCDIIREIL 493
               D ++  E L
Sbjct: 473 YHFDDREVAAEAL 485


>gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
 gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
          Length = 494

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 186/478 (38%), Positives = 265/478 (55%), Gaps = 5/478 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +      +  +  +S DSR ++ G +F A+ G +  G  F+  A+ +GA A++  
Sbjct: 8   LSALGLTARPGSDVAVTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A       A      P+LVV++ R  LS  A+  +G  P  ++AVTGT+GK+SVA+F +
Sbjct: 68  RAGEDTARQALAGGTVPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVATFTR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q  GL +  IG T    +FA  +  TTP PI L + L+ +++ GVTH ++EASSHGL
Sbjct: 128 MIWQALGLDAANIGTTGVEGAFAAPSSHTTPEPITLHRLLAEMAAAGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q RLDG+ L A +FTN  +DH+DYH T   YF+AK  LF  +LP+E  A+I  DD    
Sbjct: 188 AQRRLDGVMLKAAAFTNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +++RA   G +++ VG QG      L+        Q V    +G       PL G FQ 
Sbjct: 248 VLVERARARGQKLIRVG-QGDTCEIQLQGQRFDAAGQDVRFLWQGGPQMVRLPLIGGFQA 306

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L AAGL IA G +   V E L +L  V GR +   T + G  ++VDYAHT +++E  
Sbjct: 307 MNVLTAAGLVIACGAEPKAVFEVLPQLATVRGRMQLAATRTNGATVFVDYAHTPDAVETA 366

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GRII + G GGDRD+ KRP+MG  A   AD  IVTDDNPR+EDP  IRA +
Sbjct: 367 LRALRPHVLGRIIAIVGAGGDRDRTKRPLMGAAAAAHADAVIVTDDNPRTEDPALIRAAV 426

Query: 433 IHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G  P   E G+R EAI   ++ L   D L++ GKGHE   ++   +     D +  
Sbjct: 427 MAGAGPEATEVGDRAEAILRGVDALGPGDALLIMGKGHERGQVIGT-DVFPFDDAEQA 483


>gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
 gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
          Length = 500

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/499 (33%), Positives = 246/499 (49%), Gaps = 25/499 (5%)

Query: 18  LSIFPM--QWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           LS FP    W E K +N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA  ++  
Sbjct: 5   LSFFPALESWAELKTLNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAE 64

Query: 75  SAYSLQDFSATIR-------SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           +   +Q      +           +L V N  K LS  A   YG   E +  + +TGT+G
Sbjct: 65  ADDDVQAVRLAEKFAKNHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNG 124

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ A    Q     G  S  +G     +    Q+   TT S I + + L+     G   
Sbjct: 125 KTTTAQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADF 184

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q+R + +      FTNL RDH+DYH T + Y  AK RLF EL  K+   
Sbjct: 185 CAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQV- 243

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            I ADD   +E + +   A        +Q    +++  K V        + +     + +
Sbjct: 244 -INADDEIGREWLAKLPEAVAVSTDSQFQPQQARWVKAKAVQFTLQGATIEVESSWGNGE 302

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRI 358
               L G F V N L A    +A+G D   ++E    L+ V GR E + +         +
Sbjct: 303 LKSRLIGAFNVSNLLTAFAGLLALGYDLQKLIETAPLLNGVCGRMECLISEENPEESPMV 362

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L   R    G +  VFGCGGDRD GKRP+M +IA  LAD  IVTDD
Sbjct: 363 IVDYAHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADKVIVTDD 422

Query: 419 NPRSEDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+EDP+ I  +I+ G   P  ++  + R  AI  AI     +DV+++AGKGHE   I+
Sbjct: 423 NPRTEDPDVIFNDIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQII 482

Query: 476 TNGEKKMSVDCDIIREILG 494
              +K    D +  ++ LG
Sbjct: 483 GT-KKYHFSDQEWAKKFLG 500


>gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
 gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
          Length = 492

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 186/479 (38%), Positives = 263/479 (54%), Gaps = 5/479 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +   Q R+  I  ++ DSR +  G +F A+ G K  G  FI  A+  GA A++  
Sbjct: 4   LTALGLTAAQGRDATITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALRMGAAAVLTD 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S+  ++V ++ R+ L+  AS  +G HP  ++AVTGT+GK+SV+SF +
Sbjct: 64  AAGARIAADVLAASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNGKTSVSSFCR 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +  GL+   +G T    ++A   + TTP PI L + L+  +  G+THV++EASSHGL
Sbjct: 124 QIWEEMGLAGVNLGTTGVEGAWAYPLKHTTPEPITLHRVLAEAAGHGITHVAMEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH T ++YF AKM LF  +L ++  A++  DD    
Sbjct: 184 DQRRLDGVVLAAAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAVVNLDDPKGP 243

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            V       G  V+ VG        L         Q +  + +G+       L G FQ  
Sbjct: 244 VVAAICTQRGQEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRPHHARLALIGGFQAE 303

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL IA G D   V   L +L  V GR E   T + G  ++VDYAHT +++E  L
Sbjct: 304 NVLLAAGLVIAAGADPLDVFAALSQLGTVRGRMELAATRANGAAVFVDYAHTPDAVETAL 363

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GRI+ + G GGDRD  KRP+MG  A + AD  IVTDDNPRSEDP  IRA ++
Sbjct: 364 KALRPHVMGRIVAIIGAGGDRDSTKRPLMGAAAAEFADSVIVTDDNPRSEDPASIRAAVL 423

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G  G     E  +R EAI   I+ML   D L++AGKGHE+  I+ +       D +  
Sbjct: 424 AGAQGCDSLSEVADRAEAILRGIDMLQPGDALLIAGKGHESGQIIGD-TIMPFDDVEQA 481


>gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 484

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 228/494 (46%), Positives = 309/494 (62%), Gaps = 16/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL           L +  +   + ++  +SSDSR ++AG +F A+ G K DG ++ 
Sbjct: 1   MKLRDL--------AGILPVEGIASVDLEVTGISSDSRQVKAGVVFFALAGTKADGAVYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    A   ++A      S       P+L VD+ R  L+  A+R +GK PE ++AV
Sbjct: 53  ED------AAARGAAAIVAGKGSTIAGLPVPVLAVDDPRLALAQSAARYFGKQPEIMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +++G ++  IG T  ++    D    TTP P+ L + L  L+ 
Sbjct: 107 TGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNDYGSLTTPDPVALHQLLQELAD 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  AK+RLF+ LLP
Sbjct: 167 AGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTIEDYHRAKLRLFDTLLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S      A  AG  VL+VG  G F+ LK+V    ++Q+  +  +G  
Sbjct: 227 KGAPAVIFADDPWSAPTTVAAKAAGLNVLTVGRHGDFLRLKRVEHERHRQRAEVEADGVL 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQ+ NALV+AGL I+ G   A  L  LEKL   PGR + VGT   G  +Y
Sbjct: 287 YEIDLPLAGDFQISNALVSAGLAISTGTPVAKALMALEKLKGAPGRLDLVGTTGNGAPVY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPDALENVLASVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIATRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRA I+   PG IE G+R +AI  A+ ML+  D L+VAGKGHE    + + E
Sbjct: 407 PRSEVPETIRAAILAAAPGAIEIGDRRQAIHEAVAMLHAGDTLIVAGKGHEEGQTIGS-E 465

Query: 480 KKMSVDCDIIREIL 493
                D + +R  L
Sbjct: 466 TLHFSDHEEVRAAL 479


>gi|307944899|ref|ZP_07660236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
 gi|307771823|gb|EFO31047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
          Length = 489

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 204/476 (42%), Positives = 283/476 (59%), Gaps = 3/476 (0%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           I P       I  +++DSR I+ G++F A+ G   DG  F  +A+  GA A++     + 
Sbjct: 11  IVPAAGSTVSITGLTADSRAIKPGFLFAALKGTHVDGADFAAKAVGAGAVAVLCERD-AA 69

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +  +  +  +   DN R+  +L A+R +G  PE ++AVTGTSGK+SVA FV+QI Q 
Sbjct: 70  DRLAQELSKDVVLWPSDNPRRDFALMAARFHGAQPEVMVAVTGTSGKTSVAHFVRQIFQA 129

Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G +S  +G   T+ +       LTTP P+ L   L+ LS +G+TH ++EASSHGLDQHR
Sbjct: 130 AGHASASLGTIGTVTADGQSYGGLTTPDPVSLHAELARLSKEGITHTALEASSHGLDQHR 189

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LDG++L+A  FTNLGRDH+DYH T + Y  AK+RLF +LL K +P ++   + Y+  V+ 
Sbjct: 190 LDGVRLVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLLKGAPVVVEPSEPYADRVIA 249

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G  V SVG  G+ I L K+      Q++ +   G+    L PL G FQV NALVA
Sbjct: 250 VAQERGLPVFSVGEAGENIRLAKLTPTAGGQELVVEAGGQTTTVLLPLIGRFQVSNALVA 309

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AGLCI  G+     +  L +L   PGR EF G +  GG +Y+DYAH  ++LE  L  +R 
Sbjct: 310 AGLCICAGVAPDEAIAALAELKGAPGRLEFAGRSQTGGTVYIDYAHKPDALENALAALRP 369

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
             SG++ VV G GGDRD GKR IMG+++   AD+ IVTDDNPR+EDP  IR  ++ G PG
Sbjct: 370 FASGQLSVVIGAGGDRDPGKREIMGRVSQVGADLVIVTDDNPRTEDPATIRKAVLSGAPG 429

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +E G+R EAIR  +  L   D+L VAGKGHET  I+         D + + E L 
Sbjct: 430 ALEIGDRREAIREGVRRLKSGDILCVAGKGHETGQII-GQTVHPFSDHEAVAEALA 484


>gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
 gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
          Length = 496

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/482 (33%), Positives = 239/482 (49%), Gaps = 18/482 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SA 84
           +++N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA  ++  +   +Q       
Sbjct: 18  KELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRFAEK 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
              S   +L V N  K LS  A   YG   E +  + +TGT+GK++ A    Q     G 
Sbjct: 78  FANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFSQWRNLLGG 137

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G     +    Q+   TT S + +   L+     G    ++E SSHGL Q+R + 
Sbjct: 138 KSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAMEVSSHGLAQYRAEA 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH T + Y  AK RLF EL  K+    I ADD   ++ + +  
Sbjct: 198 LDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQV--INADDEIGRKWLAKLP 255

Query: 262 NAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        +Q    ++I  K V        +       + +    L G F V N L A
Sbjct: 256 EAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTA 315

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKN 375
               +A+G D   ++E    L+ V GR E + +         + VDYAHT ++LE  L  
Sbjct: 316 FAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDYAHTPDALEKALDA 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  VFGCGGDRD GKRP+M +IA  LAD  I+TDDNPR+EDP+ I  +++ G
Sbjct: 376 ARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIITDDNPRTEDPDVIFNDVMKG 435

Query: 436 I--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              P  ++  + R  AI  AI     +DV+++AGKGHE   I+   +K    D +  R+ 
Sbjct: 436 FRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWARKF 494

Query: 493 LG 494
           LG
Sbjct: 495 LG 496


>gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
 gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
          Length = 506

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 180/526 (34%), Positives = 258/526 (49%), Gaps = 52/526 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L     P       +      + +I  +  DSR ++AG +F A+ G   DG+ F+
Sbjct: 1   MLLSELTKSVMP-------LEVGGGADPEIEGLYYDSRRVKAGGLFFALKGVASDGYSFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI  GA A+VV                 P + V + R  +S  A+  YG       ++
Sbjct: 54  DTAIKAGAVAVVVD--------GTLTPQGIPWVRVADARLAMSRMAAAFYGFPTATLPLV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++   ++ I ++SG+ +  +G  +      A     TTP  + L + L  L
Sbjct: 106 GITGTNGKTTITYLIESILEKSGIPAAVLGTVNYRFREKAIPAPNTTPESVDLQRTLREL 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SSH L Q R+DG     G FTNL RDH+DYH   ++YF +KMRLF EL
Sbjct: 166 IDMGAKGVVMEVSSHALQQRRVDGCCFDVGVFTNLTRDHLDYHLDMESYFQSKMRLFSEL 225

Query: 238 LPKES-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQV 291
           L  +       A++  DD Y   +++ A    C VLS G  G      ++V         
Sbjct: 226 LAADRIKPKRCAVVNIDDPYGPRIVQGAA---CPVLSYGISGNAHVRAERVVFSVAGISC 282

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +       +    L G F +YN L A    IA+ +    + E LE    VPGR E V  
Sbjct: 283 VLVTPQGQINLHSELLGRFNLYNILAATAAGIAMELPLDAIHEGLEHHPQVPGRVERVA- 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N RG  I VDYAHT ++LE +L+ +  +  GRII VFGCGGDRD+GKRP+MG+IA   +D
Sbjct: 342 NDRGLTILVDYAHTGDALENVLRTLTELKKGRIITVFGCGGDRDRGKRPVMGEIAGRYSD 401

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTA 452
           ++I+T DNPRSEDPEKI A +  GI                    G+    +R EAIR A
Sbjct: 402 LSIITSDNPRSEDPEKIIAGVREGIVPLGIREYGSEELRHGFSEKGYAAVESRREAIRLA 461

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII----REILG 494
           +      D++++AGKGHE   I+ + EK    D +      RE+ G
Sbjct: 462 VAAARPGDIVLLAGKGHEDYQIIGS-EKHHFDDREEAAQACRELAG 506


>gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 501

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/486 (33%), Positives = 238/486 (48%), Gaps = 22/486 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +      
Sbjct: 19  KPLKQMTLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGAALVLAEADEGQDEIELDAK 78

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R+   ++ V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q  
Sbjct: 79  FAKYNLDRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL Q
Sbjct: 139 NLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R + +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E 
Sbjct: 199 YRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELNTKAQV--LNADDEVGREW 256

Query: 257 MKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + +  NA       S     KF+ +  V       ++T      +      L G F V N
Sbjct: 257 LAKLPNAVAVSTDASFSSDHKFVKVTDVSFSLQGVKITFESSWGNGALNSRLIGAFNVNN 316

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
            L A    + +G D   ++E    L  V GR E+V +         + VDYAHT ++LE 
Sbjct: 317 LLTALASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDALEK 376

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R  T G +  +FGCGGDRD GKRP+M  IA  LAD  I TDDNPR+ED  KI A+
Sbjct: 377 ALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEKLADKVIATDDNPRTEDNAKIMAD 436

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I+ G   +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D + 
Sbjct: 437 ILKGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQET 495

Query: 489 IREILG 494
             + L 
Sbjct: 496 AAKYLA 501


>gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
 gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
          Length = 498

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 165/502 (32%), Positives = 257/502 (51%), Gaps = 30/502 (5%)

Query: 9   KDFPELINQL-SIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           K   EL  ++  I+ +  R+  +I  +S+DSR I+ G++FV I G   DG  F  QA+ +
Sbjct: 2   KTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVEK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++ +    L             + V +    L       Y    + +  + VTGT+
Sbjct: 62  GAVAVLTNKHLDL-------PLEITQITVPDIHAALEDIVPYFYDYPGKKMRMIGVTGTN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +  +  I + +G     IG   + I     +   TTP  + L   L+ + ++G+ 
Sbjct: 115 GKTTTSHIIAHILREAGYHVGVIGTIHALIDDKELEIHNTTPDVVELQALLALMCAEGMD 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----L 238
           +V +E SSH L  +R+ GI+     FTNL +DH+D+H++ + Y  AK +LF  L     +
Sbjct: 175 YVVMEVSSHALALNRVAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFSGLTAEPPV 234

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
            K   A+I  DD ++ E++K      C+VL+ G +    +    +          +    
Sbjct: 235 KKNKTAVINIDDPHADEILK---ATSCKVLTYGVEKDADLKGSNLQVGLKSSSFDVVGPF 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + G F VYN L A G   A G+D+ ++ + ++  + VPGRFE V    +   
Sbjct: 292 VSVSLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFELV-EAGQDFA 350

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VDY+HT +SLE  L   R +   RII VFGCGGDRD+ KRPIMG IA   ADI IVT 
Sbjct: 351 IVVDYSHTPDSLEKALTTARAMKPNRIITVFGCGGDRDRTKRPIMGGIAAQYADIPIVTS 410

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DNPRSEDPE I +E+  G+   +++G       +R +AI  AIE+    D++++AGKGHE
Sbjct: 411 DNPRSEDPEFIISEVEGGVRAALKEGQRHEVIVDRRQAIYKAIEIAEPGDIVLIAGKGHE 470

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T  I+ +G      D ++ R+ 
Sbjct: 471 TYQILKDGTIH-FDDREVARDA 491


>gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
 gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
          Length = 484

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/492 (33%), Positives = 252/492 (51%), Gaps = 22/492 (4%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +L+N +  + +       I  +  DSR +  G +FVAI G K DGH FI QAI  GA
Sbjct: 2   ELIKLLNDIEYYTVNGDVHLDIKNICYDSRKVTPGSLFVAIEGFKTDGHRFIRQAIDNGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A+VV+    L D          ++ V+++R  L+  +   Y    + +  + VTGT+GK
Sbjct: 62  VAVVVTRDVPLPD-------GVSVVKVEDSRLSLAALSRAFYDYPDKQLHLIGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SV   V+ I ++SG     IG     I         TTP    L      ++  G+  V
Sbjct: 115 TSVTYMVKSILEQSGRKVGLIGTIQNMIGDVVLHTERTTPESSDLYALFRQMADGGIQDV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L  +R+ G +   G FTNL  DH+D+H     YF AK++LF+          
Sbjct: 175 VMEVSSHSLALNRVAGCRFDIGIFTNLTEDHLDFHSNMDDYFAAKLKLFQN----SGLIA 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              DD+Y  ++     +       +  +   +    + +        I + G     +  
Sbjct: 231 TNVDDSYGVKLKDMFVSKTVYTYGIEREA-HVTASNILSDAKGSTFDIDICGDRRPVIIN 289

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG F VYNAL AA  C A+G+ +  + + L+ L  VPGRFE +GT++    + +DYAHT
Sbjct: 290 IPGRFSVYNALAAAAACYAMGVSADDISKGLQALKSVPGRFEVLGTDTD-FTVIIDYAHT 348

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE ILK+++ I  GR+I +FGCGGDRD  KRPIMG+I    AD  I+T DNPRSEDP
Sbjct: 349 PDGLENILKSVKDIAKGRVIALFGCGGDRDAAKRPIMGEIGGRYADFCILTSDNPRSEDP 408

Query: 426 EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             I  +I  GI      +I   NR +AI+  ++   K D+L++AGKGHET  I+ +    
Sbjct: 409 MAIIRQIEEGIRKTHCPYIVIENRRQAIKYGLQTARKDDILLLAGKGHETYQILKDKTIH 468

Query: 482 MSVDCDIIREIL 493
              + +++RE+L
Sbjct: 469 -FDEREVVRELL 479


>gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
 gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
          Length = 499

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 182/475 (38%), Positives = 274/475 (57%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L +      +  I+ ++ DSR    G +F A+ G++  G  FIP A+ QGA AI+  
Sbjct: 14  LSELGLTARGGADPLISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGAVAILTD 73

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S+  +++V++ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+FV+
Sbjct: 74  AAGAKIAAQPLEESHAALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSVATFVR 133

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 134 QIWCALGHEAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEASSHGL 193

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +LP++  A+I  +D+   
Sbjct: 194 DQCRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMNDSRGA 253

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  V+S+G     I L  +      Q +  +   + +     L G FQ  N
Sbjct: 254 EMRAVAAARGQEVISIGRGLGDISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIGGFQAEN 313

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D A V + L +L  V GR E   T   G  ++VDYAHT +++   +K
Sbjct: 314 VLLACGLVIAGGEDPAAVFDTLPQLTTVRGRMEHAATRDNGASVFVDYAHTPDAVATAIK 373

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 374 ALRPHVLGRLVAIVGAGGDRDATKRPLMGRAAQENADVVIVTDDNPRSEDPAVIRAAVRG 433

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +E G+R EAI   ++ML+  D L++ GKGHE+  +V   +     D +  
Sbjct: 434 GAPDALEVGDRAEAILRGVDMLSTGDALLICGKGHESGQVVGT-DVLPFDDVEQA 487


>gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
 gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
          Length = 486

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 195/474 (41%), Positives = 277/474 (58%), Gaps = 12/474 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  V++DSR    G +F A+ G K+DG  FIPQAI+QGA A++V    +  D     
Sbjct: 19  DPDILAVTADSRRAGPGTLFFALRGAKQDGSAFIPQAISQGAAAVIVDQETARPD----- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            S  P++V  + +  L+  AS L G  P  I A+TGT+GKSS A F++Q+    G  +  
Sbjct: 74  -SAVPVIVRPDAKHLLACMASALAGPQPSCIAAITGTNGKSSTADFLRQLWILQGNRAAS 132

Query: 147 IGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +G    IS          TTP P+ L++ L+ L+  GV HV++EASSHGL+QHRLDG+ L
Sbjct: 133 LGTLGLISDTDVPAPPSLTTPDPVSLSQTLAALARNGVEHVALEASSHGLEQHRLDGVTL 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD--DAYSKEVMKRAHN 262
            A  F+NL RDH+DYH T +AY  AK+RLF+E+LP    A + AD        +   A  
Sbjct: 193 TAAGFSNLTRDHLDYHLTLEAYRAAKLRLFDEVLPTGGIAAVNADMDSETFSALQDIAAR 252

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
              ++ SVG  G  + L +     + Q + +++ G++  +    LPG FQ  N ++AA +
Sbjct: 253 RSLKLRSVGRNGTTLRLIEARPTPSGQILRLALHGEELPEISLSLPGRFQADNVMLAAAM 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C     D+  V+  L +L  V GR E       G   YVDYAHT ++L+ +L ++R  T+
Sbjct: 313 CWQDDADTRQVVALLPRLTGVHGRCERAVALPNGAAAYVDYAHTPDALDCVLSSLRPHTT 372

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR++VVFG GGDRD+GKRP+MG +A  +AD+AIVTDDNPR+E+P  IR+EI+   P  +E
Sbjct: 373 GRLVVVFGAGGDRDRGKRPLMGAVAARMADLAIVTDDNPRTEEPSSIRSEILAACPDALE 432

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
             +R  AI   +E L   D+LVVAGKGHE   IV   E     D  +IRE+ G+
Sbjct: 433 IADRRSAIAAGLEALQPGDILVVAGKGHEQGQIVGT-EILPFDDRLVIRELAGV 485


>gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens FZB42]
 gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42]
          Length = 490

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/504 (32%), Positives = 243/504 (48%), Gaps = 31/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     E +         + +  I  +  DSR ++ G +FV I G   DGH F 
Sbjct: 1   MKLTKLLTYLMAEPVQN------DFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA AIV      +         + P+++V  +++ LS+ +   YG+  + +  +
Sbjct: 55  QKAAENGAAAIVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+S    V +I +++G  +  IG     I       + TTP  + L K    +
Sbjct: 106 GITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + + V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF +L
Sbjct: 166 NDEHVDTAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQL 225

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
                  K   A++ ADD  S    K        +L+ G +    +  K++         
Sbjct: 226 GGSFNHEKPKRAVLNADDKASAYFEK---VTAAHILTYGIENDADVMAKQIEISAQGTSF 282

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L AA   IA G+    +   LE+L  V GRFE V  
Sbjct: 283 ELVTPKGTKQITVSLVGRFNVYNVLAAAATGIAAGLPFDTITSALEELQGVRGRFELVNH 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N +   + VDYAHT +SLE +L   + +T G++ VV GCGGDRD+ KRP M +IA+ +AD
Sbjct: 343 N-QPFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIAD 401

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPRSEDP  I  ++  G+ G  +    NR +AI  AI    K DV+++AGKGH
Sbjct: 402 EPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + N E     D ++    +
Sbjct: 462 ETYQQIGN-ETFDFDDAEVAGRAI 484


>gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
 gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
          Length = 503

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 185/482 (38%), Positives = 264/482 (54%), Gaps = 8/482 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +     RE  I  +S DSR ++ G +F A+ G K  G  FI  A+  GA AI+  
Sbjct: 12  LAALGLRGQGGREATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILTD 71

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +    +    S   +++ ++ R  L+L AS  +G HPE ++AVTGT+GK+SV++F +
Sbjct: 72  AQGAQIAANELAESTAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFAR 131

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI     L++  +G T    ++    + TTP PI L + L++  S  +THV+VEASSHGL
Sbjct: 132 QIWIEMNLAAVNLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVAVEASSHGL 191

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN   DH+DYH+T +AYF+AKM LF  LLP++  A+I  DD    
Sbjct: 192 DQRRLDGVVLSAAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDPKGP 251

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           EV++ A N G   ++VG        L         Q++    +         L G FQ  
Sbjct: 252 EVVQIAQNRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKLIGGFQAD 311

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A  L IA G D   V + L  L  V GR +   T   GG ++VDYAHT +++   L
Sbjct: 312 NVLLATALVIAAGGDPEEVFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATAL 371

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R    G++I + G GGDRD GKRP+MG+ A   AD+  VTDDNPRSEDP  IRA ++
Sbjct: 372 MAMRPHVMGKLIAIVGAGGDRDTGKRPLMGQAAAQNADMVFVTDDNPRSEDPATIRAAVM 431

Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G          IE G+R EAI   ++ L   D L++AGKGHE+  I+ + +     D +
Sbjct: 432 VGALENAAGKSVIEVGDRAEAILRGVDALGPGDALLIAGKGHESGQIIGD-DVLPFDDVE 490

Query: 488 II 489
             
Sbjct: 491 QA 492


>gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
          Length = 482

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 204/471 (43%), Positives = 278/471 (59%), Gaps = 9/471 (1%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            +    +I  +++DSR ++ G++F A+ G K DG  FI QAI +GA A++V         
Sbjct: 12  PEGGATEILGLTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLV-------PL 64

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            A + +N P++   N R+ L+L A+  +G  P  + AVTGT+GK+S+A+F+++I    G 
Sbjct: 65  DAAVAANVPVIADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFLREIWAALGE 124

Query: 143 SSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G    T +   +    TTP P+ L   L+ L+ +GVTH+++EASSHGL Q+RLDG
Sbjct: 125 EAASLGTLGVTSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSHGLAQYRLDG 184

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +KL A  FTN+ RDH+DYH +   Y  AK+RLF E++     A++ AD A   E      
Sbjct: 185 VKLRAAGFTNITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQYAEFEAVCW 244

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G R++SVG +GK I L         Q + +  EGK++    PL G FQ  NALVAAGL
Sbjct: 245 ARGHRIISVGRKGKGIFLAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQASNALVAAGL 304

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            I  G  +  V   LEKL    GR E       G  +Y+DYAHT ++LE  L+ IR  T+
Sbjct: 305 AIGCGGAAEKVFAALEKLTGAKGRMEEAAHLPNGASVYIDYAHTPDALENALEAIRPHTA 364

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR+ +VFGCGGDRD GKRP+MG  A  LADI  VTDDNPRSE  + IRA ++ G PG IE
Sbjct: 365 GRLSIVFGCGGDRDAGKRPLMGAAAAKLADIIYVTDDNPRSEAADAIRAAVLKGCPGAIE 424

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            G+R  AI TA+  L   DVLVVAGKGHET  IV +       D + IRE 
Sbjct: 425 IGDRAAAIETAMRALQPGDVLVVAGKGHETGQIVGDKVLP-FSDHEAIREA 474


>gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechocystis sp. PCC 6803]
 gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803]
          Length = 505

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 166/504 (32%), Positives = 247/504 (49%), Gaps = 18/504 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQ-----WRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           KL  L+    PE++        +        + +  +S++S     G +F+ + G + DG
Sbjct: 3   KLGQLLAS-VPEVVAAAPWLAQESDRCPALGKIVTGLSTNSHACPPGTLFIGMPGTRVDG 61

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
             F   A+  GA A VVS   +LQ F    ++   ++ V +     +  A+  Y    + 
Sbjct: 62  GEFWSGALEAGAIAAVVSEK-ALQKFP--PQNGECVIAVPDLVPVCAGLAAAFYQHPAQT 118

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
             ++ VTGT+GK++ +  ++    +   SS  +G   T    + +    TTP    L K 
Sbjct: 119 LQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGTLYTRWPGYQKTATHTTPFATDLQKQ 178

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+     G  +  +E SSH L Q R+         FTNL +DH+D+H T + YF AK  L
Sbjct: 179 LAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAVFTNLTQDHLDFHGTMENYFAAKALL 238

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+E   +   A+I  DD Y + ++ R         SV       + K +       + T 
Sbjct: 239 FKESYLQ-GRAVINQDDPYGQRLIDRLPLDQVYTYSVNDSTADFYTKDLDYQPTGVKGTF 297

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352
                +F FL PL G+F + N L A    + +G+D A +++ L     VPGR E V    
Sbjct: 298 VTPQGEFPFLSPLVGQFNLANVLAAIASGLHLGLDPAAMVKDLLDFPGVPGRMEQVQIRP 357

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE  LK  R    GR+I +FGCGGDRD+ KRP+MG IA  LAD+
Sbjct: 358 DQDISVMVDYAHTPDSLENALKAARPFIPGRLICIFGCGGDRDRTKRPLMGNIAAQLADL 417

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           A+VT DNPR+EDPE+I A+++ GI   IE    G+R  AI  AI      D +++AGKGH
Sbjct: 418 AVVTSDNPRTEDPEQILADVVQGISLDIEPWIIGDRATAIHKAIREAKPGDGVLIAGKGH 477

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I+   EK    D +  RE L
Sbjct: 478 EDYQILGT-EKIHFDDREQAREAL 500


>gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 495

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 186/476 (39%), Positives = 270/476 (56%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L +  M  +E +I  +S DSR ++ G +F A+ G    G  FI  A+ QGA AI+  
Sbjct: 10  LAELGLTAMGAQEAQITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQGAAAILTD 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +         S   +++  + R+ L+  A+  +G  PE  +AVTGT+GK+SVASF +
Sbjct: 70  QKGAEIAKKEIEASGAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKTSVASFTR 129

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP PI L + ++ ++  G+THV++EASSHGL
Sbjct: 130 QIWALLGFEAANVGTTGVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAMEASSHGL 189

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG++L A  FTN  +DH+DYH   +AYFNAK  LF  +L ++  A++  +DA  +
Sbjct: 190 EQRRLDGMQLAAAGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVVNRNDARFQ 249

Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++ + A   G  VLSVG  +   I +         Q V      + F+   PL G FQ  
Sbjct: 250 DISRLAEKRGQEVLSVGRDENASIRIIAQRFEPMGQTVLFEYNDRTFEVKLPLIGGFQAE 309

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL IA G D+  +   L +L  V GR E   T   G  I+VDYAHT ++L    
Sbjct: 310 NVLMAAGLAIASGADANEIFGVLPQLKTVRGRMELAATRKNGASIFVDYAHTPDALATAC 369

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GR+IVVFG GGDRD+GKRP+MG+ A   AD+  VTDDNPRSEDP  IR E++
Sbjct: 370 RALRPHVLGRLIVVFGAGGDRDKGKRPLMGQAAEAHADVIFVTDDNPRSEDPAVIRREVM 429

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G    IE  +R EAI   ++ L   DVL++AGKGHET  ++ + +     D +  
Sbjct: 430 DGCIEAIEVADRAEAILRGVDALGAGDVLLIAGKGHETGQVIGD-DVLPFDDLEQA 484


>gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 486

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ ++     EL+           + +IN+++ DSR +    +FV + G   DGH + 
Sbjct: 1   MNLKSILNGLDYELL-------QGTEDVQINKINYDSRKVCKDDLFVCVKGYATDGHKYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+  GA+ IV+    ++ D          I+   +TRK L+L  +  YG   E +  +
Sbjct: 54  EKAVLNGAKVIVIQDDVNIDD------KEITIVKCSDTRKALALMGANYYGNPSEKMKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G     IG  +  I         TTP  + L +    +
Sbjct: 108 GITGTNGKTTTAFMIKDILECAGKKVGLIGTIANYICGEKIHTERTTPESLELQELFGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +  +E SSH L   R+ G+K   G FTNL RDH+D+H+T + Y++AK +LFE  
Sbjct: 168 VEKGVEYCVMEVSSHSLALDRVYGVKFECGIFTNLTRDHLDFHKTFENYYDAKFKLFER- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  +I  DD Y  +V+K         + S   +    +      + ++      V 
Sbjct: 227 ---SCIKVINVDDNYGIQVLKDCQKLNAENIYSFSVKSDSDYKAYDELMGSRDIKFKVVL 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
            ++ +F+  +PGE+ +YNAL A G+C  +GI    + E +E   +VPGR E VG      
Sbjct: 284 DEEEEFILGIPGEYNIYNALGAIGVCHKMGIAIEAIKEGIEN-ALVPGRCERVGKEYNLP 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +DYAHT + LE ILK  +  T G++I +FGCGGDRD+ KRP MGKI +D+AD+A++
Sbjct: 343 YEIIIDYAHTPDGLENILKTAKAFTKGKLIAIFGCGGDRDKVKRPQMGKIGIDIADLAVI 402

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSEDP  I  +I  G+    +I   NR +AI+ AIE+  K DV+V+AGKGHET  
Sbjct: 403 TSDNPRSEDPMAIIEDIKAGLDKDNYIIIENRHDAIKKAIELAEKDDVIVIAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+ +       + ++++EIL  I
Sbjct: 463 ILKDKTIH-FDEREVVKEILDNI 484


>gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 213/498 (42%), Positives = 302/498 (60%), Gaps = 23/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL    FP   N          E +I  ++SDSR +Q GW+F A+ G+  DG  F+
Sbjct: 1   MKLSDL----FPLAENG---------ETEILGMTSDSRKVQPGWLFAALKGSVHDGGKFV 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA+AQGA AI+                + P ++ D  R+ L+L A R YG+ PE ++AV
Sbjct: 48  PQAVAQGAAAILSDGGIG--------AVSVPHVMADEPRRALALAAKRFYGEQPEFVVAV 99

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GKSS   F +QI  R+G+ +  +G    I  +   D   TTP P+ +++ +  L+ 
Sbjct: 100 TGTNGKSSTVDFARQIWSRAGIKAASMGTLGAIGPAGKVDIGHTTPDPVTVSETMKALAR 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QGVTH ++EASSHGL+QHRLDG+ L A +F NL +DH+DYH T +AY +AK+RLF +L P
Sbjct: 160 QGVTHCAMEASSHGLEQHRLDGVDLSAVAFLNLTQDHLDYHATMEAYLDAKVRLFRDLAP 219

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +  PAI+ AD  + + V + A  AG +V+S G++G+ + + ++      Q + +  +  +
Sbjct: 220 RGIPAIVNADSDHREAVEETARKAGLQVVSFGWRGEDLWIDELMPKATGQTLFLYWKDVE 279

Query: 300 F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL GEFQ  NAL AA LC+++G++   V + L  L  V GR EFVG    G  +
Sbjct: 280 QKPIELPLIGEFQTLNALAAAALCLSLGMEFPAVADGLANLKPVKGRLEFVGKTETGAAV 339

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +VDYAHT + L+++L+ +R  T+GR+ V+FGCGGDRD  KRPIMG+IA   AD  IVTDD
Sbjct: 340 FVDYAHTPDGLDVLLRAVRPHTAGRLKVIFGCGGDRDAKKRPIMGEIASRQADDVIVTDD 399

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPRSEDP KIRA ++ G  G  E G+R EAI   +  L K D LV+AGKGHET  I+ + 
Sbjct: 400 NPRSEDPAKIRASVLGGATGAREIGDRAEAIHAVVRELKKGDTLVIAGKGHETGQIIGSQ 459

Query: 479 EKKMSVDCDIIREILGLI 496
               S   + +  + GL+
Sbjct: 460 VLPFSDQDEALAALKGLV 477


>gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 493

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 182/473 (38%), Positives = 267/473 (56%), Gaps = 2/473 (0%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+      R R +  ++ DSR ++ G++F  + G++  G  FI  A+  GA AI+  +  
Sbjct: 10  LAELGFAERGRPVTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEG 69

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +         +   ++V ++ R+  S  A+  YG  P  ++ VTGT+GK+SVASF +Q+ 
Sbjct: 70  ARIARDVLDGAEVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLW 129

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           Q  G ++  IG T     F+ D   TTP P+ L  AL+ +++QG+TH ++EASSHGLDQ 
Sbjct: 130 QGLGHAAANIGTTGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQR 189

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RLDG++L+A  FTN  +DH+DYH+T +AYF AK  LF  +L  +  A+I  DD    ++M
Sbjct: 190 RLDGVRLVAAGFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMM 249

Query: 258 KRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             AH AG  +L+VG     +  L       + Q++  + +G        L G FQ  N L
Sbjct: 250 AIAHGAGAELLTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVL 309

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA GL +A G     ++  L +L  V GR + V     G  ++VDYAHT ++L+  L+ +
Sbjct: 310 VAMGLVMATGAQVGDLVPLLPRLATVRGRMQKVARRENGATVFVDYAHTPDALKTALRAL 369

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    GR++VVFG GGDRD GKRP+MG  A   AD+  VTDDNPRSEDP  IRA++  G 
Sbjct: 370 RPHVLGRLVVVFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRAGC 429

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           P   +  +R EAI   ++ L   DVL++AGKGHET   V +       D +  
Sbjct: 430 PEATDVPDRAEAILRGVDALEPGDVLLIAGKGHETGQTVGD-VVYPFDDAEQA 481


>gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 485

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/492 (32%), Positives = 252/492 (51%), Gaps = 22/492 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  ++    + +  +I  +  DSR ++ G +F  I G   DGH F  QA+ +GA 
Sbjct: 3   ELLRVLRGITPLKKEHQSIEIAHLEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V     +L         + P+++V +T++ ++  AS  YG+  + +  + VTGT+GK+
Sbjct: 63  AVVAERPLAL---------DVPVVIVRDTKRAMARLASHFYGEPTKRLQLIGVTGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV   +  + + +G  +  IG   T I     + R TTP  + L +  + + ++ V    
Sbjct: 114 SVTHILDTMFREAGQKTGLIGTLYTKIGDETIETRNTTPESLVLQQRFASMVNKQVETAV 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPA 244
           +E SSH L   R+ G       FTNL  DHIDYH+T + Y  AK  LF +L        A
Sbjct: 174 MEVSSHALHLGRVRGCDYDIAVFTNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKTA 233

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +I +DD  S  +++        V++ G +    ++ + +       + T+ V G+  D  
Sbjct: 234 VINSDDPASDRLIQM---TTADVVTYGIKKQADVYGENIKVSAAGTRFTLHVFGEKTDVQ 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F VYNAL AA      G+  + +   LEK+  V GRFE V    +   + VDYA
Sbjct: 291 LKLIGLFNVYNALAAAASAYVSGLSLSTIKASLEKVTGVAGRFEPVD-EGQDFTVIVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +SLE +L+ ++      I VV GCGGDRD  KRP+MG+IA+  AD  I T DNPR+E
Sbjct: 350 HTPDSLENVLQTVQDFADNDIHVVVGCGGDRDATKRPVMGRIAVQYADRTIFTSDNPRTE 409

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP+ I A+I  G+    +    +R  AI  AI   N  D++V+AGKGHET   +   ++ 
Sbjct: 410 DPDAILADITEGLDPDQYTVIVDRKTAIEQAIAAANTGDIVVIAGKGHETYQEIGR-QRI 468

Query: 482 MSVDCDIIREIL 493
              D ++ R+ L
Sbjct: 469 HFDDREVARDAL 480


>gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
 gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
          Length = 498

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 180/477 (37%), Positives = 261/477 (54%), Gaps = 3/477 (0%)

Query: 15  INQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++  + P    + +  I  +  DSR I++G +FVA+ G+K  G  F+  A+   A A++
Sbjct: 11  LSEFGLVPSNEIYTDPIITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVL 70

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                         + + PI+V ++ R  LS   +R +G  P  ++AVTGT+GK+SVA+F
Sbjct: 71  TDEDGFNFAKKIFTKIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANF 130

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI +  G  +  IG      + + +   TTP P  L K L  + + GVTH S+EASSH
Sbjct: 131 TRQIWECLGKKAVNIGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEASSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RLDG+ L A +FTN   DH+DYH+T  AYFN+K+ LFE +L  E   +I  DD  
Sbjct: 191 GLDQKRLDGVYLTAAAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMDDPK 250

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              + + A   G  +++VG     + LK        QQ+  S   +       L G FQ 
Sbjct: 251 GLYIYEVAKLRGQDIITVGKNNCDLTLKNCTFDATGQQILFSWRDEIKSVRLDLIGYFQA 310

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L AA L IA G     V + L +L  V GR +     S G  ++VDYAHT +++E  
Sbjct: 311 MNILQAAALVIACGEQPNDVFDTLSELRTVSGRMQLAAKRSNGASVFVDYAHTPDAVETA 370

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK +R    GR++++ G GGDRD+ KR ++G+ A   AD+  VTDDNPRSEDP+ IR  I
Sbjct: 371 LKAMRPHVMGRLLIIVGAGGDRDKSKRELIGEAAQKYADVVFVTDDNPRSEDPDSIRKSI 430

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G P  IE G+R  AI T ++ L   D L++AGKGHET  I+ N +     D +  
Sbjct: 431 LLGCPDAIEIGDRARAILTGVDALKPGDALLIAGKGHETGQIIGN-DIFDFNDLEQA 486


>gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
 gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
          Length = 483

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 165/507 (32%), Positives = 254/507 (50%), Gaps = 38/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+    P  I       +   E +I  ++ DSR I  G +FVA+ G + DGH FI
Sbjct: 1   MELSKLLKNIKPTAI-------VGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA+A++        D           + V +T   +   A+  +G     +  +
Sbjct: 54  SKAIELGAKAVLCE------DMPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK++VA+ +  + ++ G     +G  ST+ ++ +D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKMGHK---VGLLSTVCNYIEDEAIPADHTTPDPIELNELL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +   G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F
Sbjct: 165 DRMVKAGCEYVFMECSSHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L PK++ AI  ADD      M    N    + +   +       ++   H  + + + 
Sbjct: 225 DGL-PKDAFAITNADDKNG---MVMVQNCKATIKTYSTRTMADFRARIIECHF-EGMYLE 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V+G +        G+F V N L   G  I +G     VL  +  L  V GR E +  ++ 
Sbjct: 280 VDGHEVGV--QFIGKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPI-RSAE 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    +DYAHT ++LE +L  I  +    GR+I V G GG+RD+GKRP+M   A+  +D 
Sbjct: 337 GVTAIIDYAHTPDALENVLSAIHEVLNGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDK 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  M  K DV+++AGK
Sbjct: 397 VIITSDNPRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           GHE    +  G K    D +++REI  
Sbjct: 457 GHEDYQEIK-GVKHHFDDKEVVREIFA 482


>gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
 gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
          Length = 485

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 173/509 (33%), Positives = 266/509 (52%), Gaps = 39/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+ K+   + +Q +I      + +I  V+ DSR I+ G +F+A+ G + DGH FI
Sbjct: 1   MKLSELL-KNVKVIASQGNI------DVEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA AI+      L+D    +      + V +T +     A+  YG+    +  +
Sbjct: 54  SKAIELGAVAIL------LEDMPEELNEKVTYIQVASTEEEAGKVATMFYGEPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK+++A+ + ++ +  G     +G  ST+ ++  D       TTP PI L   L
Sbjct: 108 GVTGTNGKTTIATLLYRMFREFGHK---VGLLSTVCNYINDEEVPASHTTPDPIELNCLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +   G  +  +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK   F
Sbjct: 165 AKMVEAGCEYAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L PK + AI  ADD     +M +   A  +  S+     F   +      + + + + 
Sbjct: 225 DGL-PKTAFAITNADDKNG-MIMVQNTKATVKTYSIKRMADF---RAKILECHFEGMYLE 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V+GK+        G+F V N L   G  I +G     VL  +  L  V GR E + +   
Sbjct: 280 VDGKEVGV--QFIGKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSPE- 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           G    VDYAHT ++LE +L  I  +     G +I V G GG RD+GKRP+M + A+  +D
Sbjct: 337 GYTAVVDYAHTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSD 396

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR E+P+ I  +++ G+        +   +R EAIRTA  M  K DV++VAG
Sbjct: 397 TVILTSDNPRDEEPQAIIDDMLAGLDTTQRKKVLTITDRKEAIRTAAMMAQKGDVILVAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHE    + NG K    D ++IREI G+
Sbjct: 457 KGHENYQEI-NGVKHHFDDHEVIREIFGI 484


>gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
 gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
          Length = 498

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 184/476 (38%), Positives = 270/476 (56%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +     RE +I  ++ DSR +  G +F A+ G++  G  FI  A+AQ A AI+  
Sbjct: 13  LSTLGLTAQGGREAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTD 72

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         ++  +++ ++ R+ L+  A+  +G+HP  ++AVTGT+GK+SV++F +
Sbjct: 73  AEGARLARDELAEADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTR 132

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++   R TTP PI L + L+  + QGVTHV++EASSHGL
Sbjct: 133 QIWYELGEPAVNLGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGL 192

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L AG FTN  +DH+DYH++ +AYF+AKM LF  +L  +  A++  DD    
Sbjct: 193 DQRRLDGMVLSAGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGP 252

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            V + A   G  V+ VG   +    L         Q++    +G+       L G FQ  
Sbjct: 253 LVAQIAEERGQEVIGVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQAE 312

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL I  G D A V   L  L  V GR +   T   G  ++VDYAHT +++   +
Sbjct: 313 NVLLAAGLAIGSGSDPAEVFAALGHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAV 372

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GRI+ + G GGDRD+ KRP+MG+ A + AD  IVTDDNPRSEDP  IRAE++
Sbjct: 373 EALRPHVIGRIVAIVGAGGDRDRTKRPLMGQAAAEHADRVIVTDDNPRSEDPATIRAEVL 432

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G PG  E G+R EAI    +ML   D L++ GKGHET  IV +       D +  
Sbjct: 433 AGAPGATEVGDRAEAILRGADMLEPGDALLICGKGHETGQIVGDAVLP-FDDAEQA 487


>gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
 gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
          Length = 494

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 185/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      +  I  ++ DSR +  G +F A+ G++  G  F P A+  GA AI+  
Sbjct: 9   LSQLGLTARGGVDPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S   ++VV++ R+ L+  ++  +G  PE ++AVTGT+GK+SVASFV+
Sbjct: 69  AAGAQIVAELLRDSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFVR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP P+ L  AL+  ++ GVTH ++EASSHGL
Sbjct: 129 QIWIELGHKAVNLGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP++  A+I  DD    
Sbjct: 189 DQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRGP 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  V+SVG     + L       + Q +  +   K +     L G FQ  N
Sbjct: 249 EMRAIAAARGQEVISVGRGAGDLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V E L  L  V GR +   T   G  ++VDYAHT +++   +K
Sbjct: 309 ILLACGLVIASGEDPQAVFETLPHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQENADLVIVTDDNPRSEDPAVIRAAVKG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G PG +E G+R EAI   ++ L   D L++ GKGHET  IV   +     D +  
Sbjct: 429 GAPGALEVGDRAEAILRGVDALGAGDALLICGKGHETGQIVGT-DVLPFDDVEQA 482


>gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
 gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
          Length = 497

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 174/478 (36%), Positives = 264/478 (55%), Gaps = 2/478 (0%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +  L +     R+  I  ++ DSR ++ G++F A+ G +  G  FI  A+ QGA A++
Sbjct: 9   QTLGGLGLTAHGGRDVVITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVL 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +  +         S+  +++ ++ R+ L+  A+  + K P  + AVTGT+GK+SVASF
Sbjct: 69  TDAEGARIAERDLAESDAALVIAEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASF 128

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++QI    G  +  +G T    S++     TTP PI L + ++ L+  G+TH ++EASSH
Sbjct: 129 LRQIWMLVGREAVNLGTTGVEGSYSAPLMHTTPEPITLHRMMAELAEAGITHAAMEASSH 188

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q RLDG+ L  G+FTNL +DH+DYH   + YF+AK  LF  +L  ++ A+I  D   
Sbjct: 189 GLAQRRLDGVMLRVGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLR 248

Query: 253 SKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++ + A + G  VL+VG ++   + +       + Q +  S +G+       L G FQ
Sbjct: 249 GVDMAEVAADRGLDVLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQ 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N LVAAG+ I  G D   V   L  L  V GR E     + G  ++VDYAHT +++  
Sbjct: 309 AENVLVAAGMAILSGEDPDQVFTVLPALSTVHGRMELAARRTNGAAVFVDYAHTPDAVAT 368

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GR++ V G GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IR  
Sbjct: 369 ALKALRPHVLGRLVAVIGAGGDRDRTKRPLMGEAAAAHADLVFVTDDNPRSEDPAAIRQA 428

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           ++ G P   E  +R EAI  A++ L   D L++AGKGHET  I+ +       D +  
Sbjct: 429 VLLGCPDATEVADRAEAILRAVDALAPGDALLIAGKGHETGQIIGD-TVFPFDDTEQA 485


>gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
 gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
          Length = 496

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 246/495 (49%), Gaps = 21/495 (4%)

Query: 18  LSIFPM--QWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           LS FP    W E K +N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA+ ++  
Sbjct: 5   LSFFPALESWAELKTLNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAE 64

Query: 75  SAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +   +Q      +   S   +L V N  K LS  A   YG   E +  + +TGT+GK++ 
Sbjct: 65  ADDDVQAVRLAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A    Q     G  S  +G     +    Q+   TT S + + + L+     G    ++E
Sbjct: 125 AQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAME 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R + +      FTNL RDH+DYH T + Y  AK RLF EL  K+    I A
Sbjct: 185 VSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQV--INA 242

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           DD   +E + +   A        +Q    +++  K V        +       + +    
Sbjct: 243 DDEIGREWLAKLPEAVAVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSR 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDY 362
           L G F V N L A    +A+  D   ++E    L+ V GR E + +         + VDY
Sbjct: 303 LIGAFNVSNLLTAFAGLLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDY 362

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L   R    G +  VFGCGGDRD GKRP+M +IA  LAD  IVTDDNPR+
Sbjct: 363 AHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRT 422

Query: 423 EDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP+ I  +I+ G   P  ++  + R  AI  AI     +DV+++AGKGHE   I+   +
Sbjct: 423 EDPDVIFNDIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-K 481

Query: 480 KKMSVDCDIIREILG 494
           K    D +  ++ LG
Sbjct: 482 KYHFSDQEWAKKSLG 496


>gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 494

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      +  I  ++ DSR +  G +F A+ G++  G  F P A+  GA AI+  
Sbjct: 9   LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S   ++VV++ R+ L+  A+  +G  PE ++AVTGT+GK+SVASFV+
Sbjct: 69  AAGAQIVAELLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    S++     TTP P+ L  AL+  ++ GVTH ++EASSHGL
Sbjct: 129 QIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP +  A+I  DD   +
Sbjct: 189 EQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGE 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   G  V+SVG     + L       + Q +  +   K +     L G FQ  N
Sbjct: 249 QMRAVAAARGQEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V + L  L  V GR +   T   G  ++VDYAHT +++   +K
Sbjct: 309 ILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVKG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +E G+R EAI   ++ L   D L++ GKGHET  IV + +     D +  
Sbjct: 429 GAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIVGS-DVLPFDDVEQA 482


>gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
 gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
          Length = 485

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/509 (33%), Positives = 266/509 (52%), Gaps = 39/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+ K+   + +Q +I      + +I  V+ DSR I+ G +F+A+ G + DGH FI
Sbjct: 1   MKLSELL-KNVKVIASQGNI------DVEIKGVNIDSRKIKNGHLFIAMKGTQVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA AI+      L+D    +      + V +T +     A+  YG+    +  +
Sbjct: 54  SKAIELGAVAIL------LEDMPEELNEKVTYVQVASTEEEAGKVATMFYGEPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK+++A+ + ++ +  G     +G  ST+ ++  D       TTP PI L   L
Sbjct: 108 GVTGTNGKTTIATLLYRMFREFGHK---VGLLSTVCNYINDEEVPASHTTPDPIELNCLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +   G  +  +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK   F
Sbjct: 165 AKMVEAGCEYAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L PK + AI  ADD     +M +   A  +  S+     F   +      + + + + 
Sbjct: 225 DGL-PKTAFAITNADDKNG-MIMVQNTKATVKTYSIKRMADF---RAKILECHFEGMYLE 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V+GK+        G+F V N L   G  I +G     VL  +  L  V GR E + +   
Sbjct: 280 VDGKEVGV--QFIGKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSPE- 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           G    VDYAHT ++LE +L  I  +     G +I V G GG RD+GKRP+M + A+  +D
Sbjct: 337 GYTAVVDYAHTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSD 396

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR E+P+ I  +++ G+        +   +R EAIRTA  M  K DV++VAG
Sbjct: 397 TVILTSDNPRDEEPQAIIDDMLAGLDATQRKKVLTITDRKEAIRTAAMMAQKGDVILVAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHE    + NG K    D ++IREI G+
Sbjct: 457 KGHENYQEI-NGVKHHFDDHEVIREIFGI 484


>gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
          Length = 492

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 151/512 (29%), Positives = 238/512 (46%), Gaps = 42/512 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP- 114
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 115 -ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
              ++ +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSL 222

Query: 233 LFEELLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIH 286
           LF  L        +  A++ ADD   +   K        V++ G + G  +  K +    
Sbjct: 223 LFARLGNNLSTIDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNGADVQAKNITLSP 279

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR 
Sbjct: 280 KGIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRM 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +  N +   + VDYAHT ++LE +L  IR    G+II VFGCGGDRD  KR IMG IA
Sbjct: 340 EIIDEN-QDFLVIVDYAHTPDALENVLSTIREFAKGKIITVFGCGGDRDAKKRSIMGGIA 398

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDV 461
              +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+
Sbjct: 399 GSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDI 458

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHET  I+ +       D +  R+ +
Sbjct: 459 VLIAGKGHETYQILKDSTIH-FDDKEKARQAI 489


>gi|163732138|ref|ZP_02139584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
 gi|161394436|gb|EDQ18759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
          Length = 493

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 182/475 (38%), Positives = 271/475 (57%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +     R+  +  ++ DSR ++ G++F A+ G++  G  FI  A+  GA AI+  
Sbjct: 8   LSQLGLTARDGRQAALTGLAVDSRDVKDGYLFAALPGSRIHGAEFIQYALRMGASAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +    +    S+  +++ D+ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+FV+
Sbjct: 68  IVGARLAATELGASDAALVISDDPREALARTAALWFGAQPKTMIAVTGTNGKTSVATFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP PI L +AL+  + +GVTH ++EASSHGL
Sbjct: 128 QIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAAREGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH T + YF AK  LF  +LP+++ A+I  D     
Sbjct: 188 DQRRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDAKAVINIDVDRGV 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A    C V++VG     +HL  +      Q V     GK +     L G FQ  N
Sbjct: 248 DMAAIAKARNCPVITVGRDSGDLHLGNIQVDATGQVVCFMHHGKQYVRRLGLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            ++AA L IA G +   V + LE L  V GR +  GT   G  ++VDYAHT +++   LK
Sbjct: 308 VMLAAALVIACGEEPPHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIATALK 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MG+ A + AD+  VTDDNPRSEDP  IRA ++ 
Sbjct: 368 ALRPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPATIRAAVLL 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  IE G+R EAI   ++ L   D L++AGKGHET  +V + +     D +  
Sbjct: 428 GAPEAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD-DVLPFDDAEQA 481


>gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 494

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/496 (31%), Positives = 254/496 (51%), Gaps = 17/496 (3%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +    L+ Q+ + P      ++ E+  DSR ++ G +FVA+ G++ DG  +IPQAIA+GA
Sbjct: 2   RRLTALLGQVELAP----NIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGA 57

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            A++  +  + Q  S  I    PI+        LS  A   Y        ++ VTGT+GK
Sbjct: 58  SAVLAETEDAQQHLSTKIEQGVPIISFYQLGSHLSALAGLFYDNPSHKLTLVGVTGTNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++++  + Q     G  S  +G     +    ++   TT S + +  +L+    +G    
Sbjct: 118 TTISQLLAQWTTLLGHRSAVMGTIGNGLLGQVKEATNTTGSAVEVQASLADFVKRGADFA 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSHGL QHR++ +      FTNL RDH+DYHQ+ + Y  AK RLF EL       I
Sbjct: 178 AIEVSSHGLVQHRVEALAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTEL--NSRHQI 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           I ADD+  +  ++   NA        +   Q +++    +       ++         + 
Sbjct: 236 INADDSVGQTWLQEQPNAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGEL 295

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+F V N L+     +++G D   +++ + +L  V GR E +  +++     VDY
Sbjct: 296 HSALIGQFNVSNLLLVFATLLSLGYDIEKLMKTVPQLTGVCGRMERLSASNQ-PTAIVDY 354

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L+  R    G++  VFGCGGDRD+GKRPIM KIA   AD  IVTDDNPR+
Sbjct: 355 AHTPDALEKALQAARLHCQGKLWCVFGCGGDRDRGKRPIMAKIAEQFADHVIVTDDNPRT 414

Query: 423 EDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E   +I  +I+ G   P  +E  + R +AI  A++  +  DV+++AGKGHE   I+   +
Sbjct: 415 ESAAQIVQDILAGFEHPQHVEVCHARDQAIIQALQKADSDDVVLIAGKGHEDYQIIGT-Q 473

Query: 480 KKMSVDCDIIREILGL 495
           K+   D + +++   +
Sbjct: 474 KQHFSDQETVQQYFKV 489


>gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
 gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 35/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKL +L             +   +W+   + +I  +  DSR + +G +F  I G   DGH
Sbjct: 2   MKLSELTN----------VLRSYEWKNEGDPEITHIEMDSREVVSGTLFFCIKGYTVDGH 51

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            F  QA+ +GA A++        +         P ++V +T++ ++  A+  YG      
Sbjct: 52  DFAKQAVEKGAVALIAEREVKGVE--------VPTIIVQDTKRTMARLANLFYGDPTSKM 103

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
            ++ VTGT+GK++V   ++QI   +   +  IG   T I       + TTP  I L K  
Sbjct: 104 NLIGVTGTNGKTTVTHLLEQIMNDANKRTGLIGTMYTKIGDVELKTQNTTPESITLQKRF 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +    V    +E SSH L   R+ G       FTNL  DH+DYH+T +AY  AK  LF
Sbjct: 164 KEMVDADVETALMEVSSHALHLGRVRGCDFDIAVFTNLTPDHLDYHETMEAYLFAKGLLF 223

Query: 235 EELLPK---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQ 290
            +L  +      A++  DD  + E++K        VL+ G + K  I  + +        
Sbjct: 224 AQLGNRFTEGKVAVLNRDDEAADELLKM---TTVDVLTYGVENKADIMAEDIEITARGTT 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+    +  +    L G F VYNAL AA   IA GI    + + LE +H V GRFE V 
Sbjct: 281 FTLKAGTESIEIEMKLIGMFSVYNALAAASAAIASGIPLEQIKKSLEAVHGVAGRFEPVD 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHTS+SLE +L  +R    G+I VV GCGGDRD+ KRP+M +IA   A
Sbjct: 341 A-GQDYTVIVDYAHTSDSLENVLTTVREFAKGKISVVVGCGGDRDRTKRPVMAEIATKYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D AI T DNPRSEDP++I  ++ HG+    +    +R EAI  AI   NK D+LV+AGKG
Sbjct: 400 DNAIFTSDNPRSEDPKQILDDMTHGLESSNYTVCVDRKEAIYQAINDANKDDILVIAGKG 459

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET  I+         D ++ ++ +
Sbjct: 460 HETYQIIGANTTH-FDDREVAKQAI 483


>gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
 gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
          Length = 482

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 270/495 (54%), Gaps = 22/495 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   DLSLILKSLEYSFVKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV      L+D S     +  I+ V ++RK L++ AS  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKD--LEDLSCY--KDCTIIKVPDSRKALAIMASNYYGTPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G  +  I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESNRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+        ++I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKN----AQNSVI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLF 304
             DD+Y ++V+K+A       ++ G + K   LK      + + V      + +      
Sbjct: 234 NIDDSYGEKVLKKALGNK---VTYGVE-KSCDLKAENLHMHSRGVEFDTIFKNEKETIAL 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYA 363
            +PG++ +YNAL + G C+  GI    + E L  +  VPGR E V  N   G  + VDYA
Sbjct: 290 NIPGKYNIYNALGSIGACLLEGISLQTIKEALGDIS-VPGRCEIVTKNYDLGYDVIVDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  DL+DIAI+T DNPR+E
Sbjct: 349 HTPDGLENILATAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSDLSDIAIITSDNPRTE 408

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP  I  +++ GI    +I    R +AI+ A+E+  + DV+VVAGKGHE   I+ +    
Sbjct: 409 DPSLIIKDVLEGIEKDNYIVVEGRRDAIKKAMEIAKENDVIVVAGKGHEDYQILKDRTIH 468

Query: 482 MSVDCDIIREILGLI 496
              + ++I E++  I
Sbjct: 469 -FDEREVIEELIKEI 482


>gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 486

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 170/493 (34%), Positives = 262/493 (53%), Gaps = 22/493 (4%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   ++  +    +Q   + ++N+++ DSR      +FV + G   DGH +I +AI  GA
Sbjct: 2   NLKSILKGIDYESIQGDIDIEVNKINYDSRKAGNDDVFVCVKGYATDGHKYIEKAIENGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + IV+     ++D       N  I+  ++TRK L+L  +  Y      I  + VTGT+GK
Sbjct: 62  KVIVIQDDIEIKD------ENITIIKCNDTRKALALMGANYYDNPSSKIKIIGVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A  ++ I + S      IG  +  I         TTP  + L +  S +  +GV + 
Sbjct: 116 TTTAFMIKHILEESNKKVGLIGTIANFIGDEKIHTERTTPESLELQELFSEMVDKGVEYC 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L   R+ GI+   G FTNL RDH+D+H+T + Y+ AK +LFE         I
Sbjct: 176 VMEVSSHSLALDRVYGIEFQVGIFTNLTRDHLDFHKTFENYYKAKFKLFER----SRIKI 231

Query: 246 IYADDAYSKEVMKRAHNAGCR-VLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +  DD Y ++V+   +N  C  + S   +               + +  ++++ +D  F+
Sbjct: 232 VNVDDNYGRQVISDLNNLKCDDIYSFSVKSISDFKAFDEEMGSREIKFKLNLK-EDEQFV 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDY 362
             +PGE+ +YNAL A   C  +G+    +   +E + VV GR E V      G  I +DY
Sbjct: 291 LNIPGEYNIYNALGAIAACFKLGMPIKDIKSGIENV-VVLGRCERVAKEYNLGYEIIIDY 349

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + LE ILK  +  T GR+I VFGCGGDRD+ KRP MGKI+ D+ADI IVT DNPRS
Sbjct: 350 AHTPDGLENILKTAKAFTKGRLISVFGCGGDRDKVKRPEMGKISTDIADITIVTSDNPRS 409

Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           E+P  I  +I  GI    +    NR EAI+ +I++    DV+V+AGKGHET  ++ + E 
Sbjct: 410 EEPLSIIKDIEAGIDKDNYFVIENRKEAIKKSIDIALDNDVIVIAGKGHETYQVLKD-ET 468

Query: 481 KMSVDCDIIREIL 493
               + +I++EIL
Sbjct: 469 IHFDEREIVKEIL 481


>gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
 gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
          Length = 484

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/504 (33%), Positives = 253/504 (50%), Gaps = 31/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ+L+       I  L+I  +   +  I  V+ DSR I  G  FVA+ G + DGH FI
Sbjct: 1   MNLQELLKS-----IKSLAI--IGDTDVDITGVNIDSRKISNGHAFVAMKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+AI  GA+AI+        D           + V +T + +   A+  YG   + +  +
Sbjct: 54  PKAIELGAKAILCE------DMPEDRTDGVTYVQVASTAEAVGKLATAFYGYPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +      I         TTP  I L + L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKMGHRCGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH + Q R+ G+      FTNL RDH+DYH T + Y NAK   F++L
Sbjct: 168 VDAGCEYVFMECSSHAIAQRRIGGLTFTGALFTNLTRDHLDYHGTFENYRNAKKMFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + AI  ADD     +++    A  +  S+     F   +      +   + ++V+G
Sbjct: 228 -PKSAFAITNADDKNGMFMVQN-TKATIKTYSMERMADF---RARIIEMHFAGMYLNVDG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D        G+F V N L   G    +G     +L  L  LH V GR E +  +S G  
Sbjct: 283 NDVGV--QFIGKFNVSNLLAVYGAARMLGKQPEDILVTLSTLHSVSGRLEPIQ-SSEGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VDYAHT ++L  +L  IR +   G+II V G GG+RD+GKRP+M + A+  +D  I+T
Sbjct: 340 AIVDYAHTPDALANVLNAIREVDKTGQIITVCGAGGNRDKGKRPLMAQEAVKQSDRVIIT 399

Query: 417 DDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR E+P+ I  +++ G     +   +   +R EAI+TA  +  K DV++VAGKGHE 
Sbjct: 400 SDNPRFEEPQDIIDDMLAGLNTQQMKKVVSIADRREAIKTACMLAKKGDVVLVAGKGHEN 459

Query: 472 VHIVTNGEKKMSVDCDIIREILGL 495
              +  G K    D ++IREI G+
Sbjct: 460 YQEIK-GVKHHFDDREVIREIFGI 482


>gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
 gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
          Length = 483

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 163/502 (32%), Positives = 261/502 (51%), Gaps = 33/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+     EL+           E+++N +  DSR +  G +FV + G + DGH + 
Sbjct: 1   MKLLDLLKGVDYELLEGTV-------EKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA+ ++      ++           +L+V+  RK L+  ++  YG   +   ++
Sbjct: 54  NKAIEAGAKVVLCEKKIDIK------SEGVTVLLVNEGRKALATMSANYYGHPTKSLKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ + +++G     +G  +  I      +  TTP  + L K    +
Sbjct: 108 GVTGTNGKTTTVYLLKSMLEKAGKKVGLVGTIANYIGENKLKSERTTPESLELQKLFKDM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +  +E SSH L   R+ G +   G FTNL RDH+D+H++   Y+NAK +LFE  
Sbjct: 168 VDANCEYCVMEVSSHSLQLDRVYGCEFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLFER- 226

Query: 238 LPKESPAIIYADDAYSKEVMK---RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                 ++I  DD Y   V+K   +  N   +  S+     F   K    +  +  +   
Sbjct: 227 ---SKASVINVDDDYGYRVLKDVEKLENKEIKTYSINNNSDF---KASDLMLKEGDIHFK 280

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G++F+    LPGE+ VYNAL A G    +GI +  + + L  + VVPGR E +G    
Sbjct: 281 INGEEFN--SVLPGEYNVYNALGAVGAMSILGISNESIRKGLLDV-VVPGRCERIGYKYD 337

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +D+AHT + L+ IL+ ++  T  R+I V+GCGGDRD+ KR  +G+I  +LAD+A
Sbjct: 338 IPYDIIIDFAHTPDGLKNILETLKGFTKNRLIAVYGCGGDRDKVKRAELGRIGTELADLA 397

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPR EDP  I  EI+ GI    ++   NR+EAI+ A+ M  + DV+V+AGKGHE 
Sbjct: 398 IITSDNPREEDPMAIIKEIVAGITKSNYLAIENRVEAIKLALGMAEEGDVVVLAGKGHEN 457

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I   G      + +++ EIL
Sbjct: 458 YQITNEGVIH-FDEREVVDEIL 478


>gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 500

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 241/485 (49%), Gaps = 22/485 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +      
Sbjct: 19  KPLKQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAK 78

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q  
Sbjct: 79  FAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G     +    Q+   TT S I + + L+     GV   ++E SSHGL Q
Sbjct: 139 NLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R + +      FTNL RDH+DYH+T + Y  AK RLF EL       ++ ADD   +E 
Sbjct: 199 YRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSEL--DTKAQVLNADDEVGREW 256

Query: 257 MKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + +  +A       S   + KF+    V       ++       + +    L G F V N
Sbjct: 257 LAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNN 316

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
            L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE 
Sbjct: 317 LLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEK 376

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+
Sbjct: 377 ALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMAD 436

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G   +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D + 
Sbjct: 437 ILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQET 495

Query: 489 IREIL 493
             + L
Sbjct: 496 AAKYL 500


>gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 500

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 240/485 (49%), Gaps = 22/485 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +      
Sbjct: 19  KPLKQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAK 78

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q  
Sbjct: 79  FAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G     +    QD   TT S I + + L+     G    ++E SSHGL Q
Sbjct: 139 NLLGGKSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R + +      FTNL RDH+DYH+T + Y  AK RLF EL       ++ ADD   +E 
Sbjct: 199 YRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSEL--DTKAQVLNADDEVGREW 256

Query: 257 MKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + +  +A       S   + KF+    V       ++       + +    L G F V N
Sbjct: 257 LAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNN 316

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
            L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE 
Sbjct: 317 LLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEK 376

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+
Sbjct: 377 ALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMAD 436

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G   +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D + 
Sbjct: 437 ILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQET 495

Query: 489 IREIL 493
             + L
Sbjct: 496 AAKYL 500


>gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
 gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
          Length = 482

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/494 (34%), Positives = 250/494 (50%), Gaps = 25/494 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F ELI  +    +       I  V  DSR ++ G +FVAI G + DGH +IP+AI  GA 
Sbjct: 3   FSELIKGIKTSAVIGEANVNITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIELGAA 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           AI+   A          + N    VV +T   +   A+R +G   +   ++ VTGT+GK+
Sbjct: 63  AILCEEA------PQQPQPNVTYAVVKSTEDEVGKVATRFFGDPSKHLKLVGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +VA+ +  + ++ G     +      I         TTP PI L + L+ + + G  +V 
Sbjct: 117 TVATLLYNLFRKLGHKCGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCEYVF 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH + Q R+ G+    G FTNL RDH+DYH+T + Y NAK   F+ L PK + AI 
Sbjct: 177 MECSSHAIAQKRIGGLTFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDGL-PKSAFAIT 235

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD      M    N    V +   Q       ++   H  Q + ++++G++       
Sbjct: 236 NADDKNG---MVMVQNTKASVKTYSIQSMADFKARIIECHF-QGMYLAIDGQEVGV--QF 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F V N L   G    +G      L  +  LH V GR + + +   G    VDYAHT 
Sbjct: 290 TGKFNVSNLLAVYGAARMLGKQREETLIAMSTLHTVNGRMDTLQSPE-GFTAIVDYAHTP 348

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++L+ +L  I  +   G II V G GG+RD+GKRP+M K A+ L+D  I+T DNPR EDP
Sbjct: 349 DALKNVLLAIHEVDGKGHIITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEDP 408

Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           + I  +++ G+        +   +R EAIRTA  +  KQDV++VAGKGHET   +  G K
Sbjct: 409 QDIINDMLAGLDAQDQKKVLTIADRKEAIRTACMLAQKQDVILVAGKGHETYQEIK-GVK 467

Query: 481 KMSVDCDIIREILG 494
               D +++R+I  
Sbjct: 468 HHFDDKEVLRDIFA 481


>gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 492

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 149/512 (29%), Positives = 239/512 (46%), Gaps = 42/512 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     +I  +  DSR I +G +F+ + G   DG    
Sbjct: 1   MKLKELASLLLIK-------DTVGDMNVEITGLEMDSRKITSGDLFICVSGI--DGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP- 114
            H F+  A+  GA A++V    +++          P +VV + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIVVKDARYAMAVIASHFYGYPSN 102

Query: 115 -ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
              ++ +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTKDHLDYHGTFHEYKHVKGL 222

Query: 233 LFEELLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIH 286
           LF  L        +  A++ ADD   +   K        V++ G   +  +  K +    
Sbjct: 223 LFSRLGNDLSTTDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNRADVQAKNITLSP 279

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR 
Sbjct: 280 KGIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRM 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +  N +   + VDYAHT ++LE +L  I   ++G++I VFGCGGDRD  KR IMG IA
Sbjct: 340 EIIDEN-QDFLVIVDYAHTPDALENVLSTISEFSTGKVITVFGCGGDRDTKKRSIMGGIA 398

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDV 461
              +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+
Sbjct: 399 GSYSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAITHAINMASSNDI 458

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHET  I+  G      D +  R+ +
Sbjct: 459 VLIAGKGHETYQILK-GSTIYFDDKEKARQAI 489


>gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 499

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/508 (29%), Positives = 238/508 (46%), Gaps = 37/508 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLF 59
           DL  K+   L+  L    +   + +I  +  DSR I  G +F+ + G   DG     H F
Sbjct: 7   DLKLKELANLL--LIKETIGNMDVEITGLEMDSRKITDGDLFICVSGI--DGFLEDRHQF 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  A+  GA A++V    +++          P ++V + R  +++ AS  YG       +
Sbjct: 63  VEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + L  
Sbjct: 114 IGITGTNGKTTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQM 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  LF  
Sbjct: 174 MKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFAR 233

Query: 237 LLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ 290
           L        +  A++ ADD   +   K        V++ G + G  +  K +       +
Sbjct: 234 LGNNLSTIDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNGADVQAKNITLSPKGIR 290

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E + 
Sbjct: 291 FLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIID 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N +   + VDYAHT ++LE +L  I     G+II VFGCGGDRD  KR IMG IA   +
Sbjct: 351 EN-QDFLVIVDYAHTPDALENVLSTISEFAKGKIITVFGCGGDRDAKKRSIMGGIAGSYS 409

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++++A
Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHET  I+ +       D +  R+ +
Sbjct: 470 GKGHETYQILKDSTIH-FDDKEKARQAI 496


>gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
 gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
          Length = 494

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      +  I  ++ DSR +  G +F A+ G++  G  F P A+  GA AI+  
Sbjct: 9   LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S   ++VV++ R+ L+  A+  +G  PE ++AVTGT+GK+SVASFV+
Sbjct: 69  AAGAQIVAQLLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    S++     TTP P+ L  AL+  ++ GVTH ++EASSHGL
Sbjct: 129 QIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP +  A+I  DD   +
Sbjct: 189 EQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGE 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   G  V+SVG     + L       + Q +  +   K +     L G FQ  N
Sbjct: 249 QMRAVAAARGHEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V + L  L  V GR +   T   G  ++VDYAHT +++   +K
Sbjct: 309 ILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVKG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +E G+R EAI   ++ L   D L++ GKGHET  IV + +     D +  
Sbjct: 429 GAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIVGS-DVLPFDDVEQA 482


>gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
 gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
          Length = 483

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/507 (32%), Positives = 253/507 (49%), Gaps = 38/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+    P  I       +   E +I  ++ DSR I  G +FVA+ G + DGH FI
Sbjct: 1   MELSKLLKNIKPTAI-------VGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA+A++        D           + V +T   +   A+  +G     +  +
Sbjct: 54  SKAIELGAKAVLCE------DMPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK++VA+ +  + ++ G     +G  ST+ ++ +D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKMGHK---VGLLSTVCNYIEDEAIPADHTTPDPIELNELL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +   G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F
Sbjct: 165 DRMVKAGCEYVFMECSSHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L  K++ AI  ADD      M    N    + +   +       ++   H  + + + 
Sbjct: 225 DGL-SKDAFAITNADDKNG---MVMVQNCKATIKTYSTRTMADFRARIIECHF-EGMYLE 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V+G +        G+F V N L   G  I +G     VL  +  L  V GR E +  ++ 
Sbjct: 280 VDGHEVGV--QFIGKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPI-RSAE 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    +DYAHT ++LE +L  I  +    GR+I V G GG+RD+GKRP+M   A+  +D 
Sbjct: 337 GVTAIIDYAHTPDALENVLSAIHEVLNGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDK 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  M  K DV+++AGK
Sbjct: 397 VIITSDNPRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           GHE    +  G K    D +++REI  
Sbjct: 457 GHEDYQEIK-GVKHHFDDKEVVREIFA 482


>gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
 gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
          Length = 487

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/506 (32%), Positives = 250/506 (49%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+    P       +  +   + ++  V+ DSR I+ G +FVA+ G + DGH FI
Sbjct: 1   MKLQELLKNIEP-------VQIIGDADVEVTGVNIDSRKIKEGHLFVAMKGTQVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+A+  GA++++        D           + V +T   +   A+  YG     +  +
Sbjct: 54  PKALELGAKSVLCE------DMPEEKVEGVTYIQVASTEDAVGKVATLFYGDPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +      I   A     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNMLLGKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G++   G FTNL RDH+DYH+T + Y NAK   F+ L
Sbjct: 168 VEAGCEYAFMECSSHAIAQKRIGGLQFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K + AI  ADD      M    N    V +   +       ++   H    + + ++G
Sbjct: 228 -SKTAFAITNADDKNG---MIMVQNTKATVKTYSTRSMADFRARILECHFG-GMYLEIDG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++        G+F V N L   G  I +G     VL  +  LH V GR E + +   G  
Sbjct: 283 REVGV--QFIGKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLHSVSGRLEPIQSPE-GYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++LE +L  I  +     G +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLEGKGGEVITVCGAGGNRDKGKRPLMAQEAVKQSDKVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  +  K DV++VAGKGH
Sbjct: 400 ITSDNPRFEEPQDIINDMLAGLNAQQMKKVISIVDRKEAIRTACMLAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    +  G K    D ++IR+I G+
Sbjct: 460 EDYQEIK-GVKHHFDDKEVIRDIFGI 484


>gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
 gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
          Length = 493

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 163/502 (32%), Positives = 247/502 (49%), Gaps = 34/502 (6%)

Query: 1   MKLQDLI---YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKLQ+L+     +  ELIN+            I  +  DSR ++ G +FV I G   DGH
Sbjct: 3   MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKEGSLFVCIKGYTVDGH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115
            +  +A+  GA AIV     ++ D         P+++V ++++ L+  A   Y +  H  
Sbjct: 54  DYAEKAVKSGAAAIVAEHPLNITD--------VPVIIVKHSQRALARIADAFYEQPTHKL 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
           N++ +TGT+GK+S    ++Q+ +++   +  IG     ++    D + TTP  + L K  
Sbjct: 106 NLIGITGTNGKTSTTHMIEQVMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  Q V    +E SSH L   R+ G       FTNL +DH+DYH T + Y +AK  LF
Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225

Query: 235 EEL-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            +L       K   AI+ ADD  S    ++   A     ++  +   +  K +  +    
Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYF-EKVTAAEVMTYALEQKADVM-AKNIQIMPKGT 283

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q  +            L G+F VYN L A  + I  G+    ++  +E+L  V GRFE V
Sbjct: 284 QFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELEGVKGRFELV 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT +SLE +L   R +T G+I  V GCGGDRD+ KRP M +IA+  
Sbjct: 344 NC-DQDFPVIVDYAHTPDSLENVLTTCRELTEGKIFCVIGCGGDRDKTKRPQMAQIAVKY 402

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  + T DNPRSEDP  I  ++ +G+P   +    NR +AI  AI    K D +++AGK
Sbjct: 403 ADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGK 462

Query: 468 GHETVHIVTNGEKKMSVDCDII 489
           GHET  I+ +       D  I 
Sbjct: 463 GHETYQIIGDQVYD-FDDAKIA 483


>gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 493

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/510 (28%), Positives = 238/510 (46%), Gaps = 38/510 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---EDGH 57
           MKL++L      +         +     +I  +  DSR I +G +F+ + G     ED H
Sbjct: 1   MKLKELTSLLLIK-------DTVGDMNIEITGLEMDSRKITSGNLFICVSGINGFLEDRH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--E 115
            F+  A+  GA A++V    +++          P ++V + R  +++ AS  Y       
Sbjct: 54  QFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYDYPSNKM 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
            ++ +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + L
Sbjct: 105 KLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + +Q V +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  LF
Sbjct: 165 QMMKNQNVDYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLF 224

Query: 235 EELLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNK 288
             L        +  A++ ADD   +   K        V++ G   +  +  K +      
Sbjct: 225 SRLGNDLSTTDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNRADVQAKNITLSPKG 281

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E 
Sbjct: 282 IRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKRIEGRMEI 341

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +  N +   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA  
Sbjct: 342 IDEN-QDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 400

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+++
Sbjct: 401 YSDFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVL 460

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+ +       D +  R+ +
Sbjct: 461 IAGKGHETYQILKDSTIH-FDDKEKARQAI 489


>gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
 gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
          Length = 494

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 244/505 (48%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KLQ L+        +  +    Q    +I  +  DSR + +G +F+ I G   DGH F 
Sbjct: 4   LKLQTLLT-------SIPAYRTSQDLSGEITNIEQDSRKVVSGTLFICIDGEIVDGHQFA 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA A GA AI+             I  + P++ V ++++ +++ A R YG   + +  +
Sbjct: 57  KQAEANGATAILAEKE---------IDVSIPVVYVKDSKRAMAILADRFYGSPSQKMKMI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   V+QI + +G  +  IG     I     + + TTP  + L +    +
Sbjct: 108 GVTGTNGKTTVTHLVEQIVRDAGSETGLIGTMYRKIGREILETKNTTPDSLTLQRTYHEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V  V++E SSH L Q R  G       FTNL +DH+DYH+T + Y  AK  LF +L
Sbjct: 168 LAADVQTVAMEVSSHALVQGRTYGTDFDIAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQL 227

Query: 238 LP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  K   AII  DD  S+ +          V++ G           V    +    
Sbjct: 228 GNSYDSEKPKYAIINQDDPVSQRMK---TATAAPVITYGIDKAADFGATDVMVTSSGTTF 284

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     DFD    + G+F +YN L A     A+ I     +  LEK+  V GRFE V  
Sbjct: 285 KLHTPDGDFDVRIKMIGKFSIYNCLAALATSYALEIPIHQAITSLEKVQGVAGRFEIVDA 344

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT + L  +L+ I      R+  + GCGGDRD+GKRP M KIA+D A 
Sbjct: 345 -GQDFTVIVDYAHTPDGLLNVLETIEEFKRSRVFAIVGCGGDRDKGKRPQMAKIAIDYAT 403

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + T DNPRSEDPE I  +++ G+P    +  + +R EAI  A+      DV+++AGKG
Sbjct: 404 DPVFTSDNPRSEDPEAIIQDMLAGLPANAVYQVRTDRKEAITYAVNEAQAGDVILIAGKG 463

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET  I+ +       D  + RE +
Sbjct: 464 HETYQIIGDQVLD-FDDRAVAREAI 487


>gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 500

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 241/485 (49%), Gaps = 22/485 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +      
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAK 78

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q  
Sbjct: 79  FAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G     +    Q+   TT S I + + L+     GV   ++E SSHGL Q
Sbjct: 139 NLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R + +      FTNL RDH+DYH+T + Y  AK RLF EL       ++ ADD   +E 
Sbjct: 199 YRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSEL--DTKAQVLNADDEVGREW 256

Query: 257 MKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + +  +A       S   + KF+    V       ++       + +    L G F V N
Sbjct: 257 LAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNN 316

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
            L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE 
Sbjct: 317 LLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEK 376

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+
Sbjct: 377 ALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMAD 436

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G   +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D + 
Sbjct: 437 ILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQET 495

Query: 489 IREIL 493
             + L
Sbjct: 496 AAKYL 500


>gi|110634362|ref|YP_674570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium sp. BNC1]
 gi|123162148|sp|Q11GS0|MURE_MESSB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110285346|gb|ABG63405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chelativorans sp. BNC1]
          Length = 483

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 228/494 (46%), Positives = 308/494 (62%), Gaps = 17/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E  + L +      E  I+ ++SDSR + AG +F A+ G+K       
Sbjct: 1   MKL--------GEFADILPLSGSIAGETTISGLASDSRRVNAGDLFFALQGSK------- 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A  A+A    +   +           P++  D+ R  L+L ++RLYG  P  ++AV
Sbjct: 46  ADGAAYAADAAGRGAVAIIARPGTVGDVGVPVIEADDPRHVLALASARLYGAQPATMVAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +++GL++  IG T  ++    +   LTTP P+ L K L  L+ 
Sbjct: 106 TGTSGKTSVAAFTRQIWEKAGLAAASIGTTGVVAPGRDEYGELTTPDPVSLHKLLRELAD 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  +KMRLF+ LLP
Sbjct: 166 AGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEHYHQSKMRLFKTLLP 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S+   K A  AG ++L+VG +G F+ +K+V    ++Q+  I  EG  
Sbjct: 226 KGAPAVIFADDPWSEPTEKVALAAGLQLLTVGRRGTFLTIKRVEHERHRQRTEIEHEGMI 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +D + PL G+FQV NALVAAGL I+ G+ +   +  LE L    GR E  GT   G +IY
Sbjct: 286 YDIMLPLAGDFQVGNALVAAGLAISTGLPADKAVAALEHLKGASGRLELTGTTEDGAQIY 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L+ +R  T+GR+IVVFGCGGDRD GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 346 VDYAHKPDALENVLQAVRPFTTGRVIVVFGCGGDRDPGKRPIMGEIARRLADVVIVTDDN 405

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR  I+  +P   E G+R EAIRTA+ MLN  D L+VAGKGHE    +  G 
Sbjct: 406 PRSEVPAEIRRAILEAVPEATEIGDRREAIRTAVAMLNSGDTLIVAGKGHEIGQEIA-GT 464

Query: 480 KKMSVDCDIIREIL 493
           K    D + +R  L
Sbjct: 465 KLPFSDHEEVRRAL 478


>gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
 gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
          Length = 483

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/504 (32%), Positives = 252/504 (50%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+     E++N          + +I  V+ DSR I+AG +FVAI G   DGH FI
Sbjct: 1   MKLNELLKNV--EVLN-----TQGDVDVEITGVNIDSRRIEAGHLFVAIPGTVTDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+AI  GA A++       QD           + V +T   +   A++ YG     +  +
Sbjct: 54  PKAIELGATAVLCEKLPEEQD------PKVTFVQVASTESCVGEVATQFYGDPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +      I   A     TTP PI L + L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNRLLAQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y +AK   F+ L
Sbjct: 168 VDAGCEYAFMECSSHAIAQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRDAKKAFFDGL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K++ AI  ADD      M    N    V +   +       K+   H  + + + + G
Sbjct: 228 -EKDAFAITNADDKNG---MVMVQNCKANVKTYSTRTMADFKAKIIECHF-EGMYLDING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+        G+F V N L   G  + +G     +L  +  L  V GR E + +   G  
Sbjct: 283 KEVGV--QFIGKFNVSNLLAVYGAAVMLGKKPEDILLIMSTLKSVNGRLEPIHSPE-GYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +L  I  +    G++I V G GG+RD+GKRPIM + A+  +D  I+
Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPIMAQEAVKQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDQKQMKKVVSIVDRREAIRTACMLAEKGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D ++++EI  
Sbjct: 460 DYQEIK-GVKHHFDDKEVVKEIFN 482


>gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 496

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 163/481 (33%), Positives = 231/481 (48%), Gaps = 19/481 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++ +++ DSR +QAG +FVA+ G++ DG  FIP AI QGA  I+  +     +     +
Sbjct: 19  TELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEAELDSK 78

Query: 88  ---------SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQI 136
                    +   ++ V N  K LS  A   Y      +    +TGT+GK++ A  + Q 
Sbjct: 79  FAKFNLDRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTAQLLAQW 138

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL 
Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLA 198

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R + +      FTNL RDH+DYH T + Y  AK RLF EL  K     I ADD   +E
Sbjct: 199 QFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQV--INADDEIGRE 256

Query: 256 VMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + +  NA             +F+    V        +       + +    L G F V 
Sbjct: 257 WLTQLPNAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRLIGAFNVN 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A    +A+G D   +++    L  V GR E + T      + VDYAHT ++LE  L
Sbjct: 317 NLLTAFAGLLALGFDIQDLIKTSPNLVGVAGRMECI-TAPNKPMVIVDYAHTPDALEKAL 375

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R    G +  +FGCGGDRD GKRP+M  IA  L D  I TDDNPR+ED +KI A+I+
Sbjct: 376 QAARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIV 435

Query: 434 HGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            G     +   NR EAI+TAIE     DV+++AGKGHE   I+   EK    D +  R+ 
Sbjct: 436 KGFSKPQQIIHNREEAIKTAIEQAKATDVILIAGKGHENYQIIGT-EKLHFSDQETARKY 494

Query: 493 L 493
           L
Sbjct: 495 L 495


>gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 500

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 240/485 (49%), Gaps = 22/485 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +      
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAK 78

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q  
Sbjct: 79  FAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL Q
Sbjct: 139 NLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R + +      FTNL RDH+DYH+T + Y  AK RLF EL       ++ ADD   +E 
Sbjct: 199 YRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSEL--DTKAQVLNADDEVGREW 256

Query: 257 MKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + +  NA       S   + KF+    V       ++       + +    L G F V N
Sbjct: 257 LAKLPNAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELDSRLIGAFNVNN 316

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
            L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE 
Sbjct: 317 LLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEK 376

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+
Sbjct: 377 ALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMAD 436

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G   +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D + 
Sbjct: 437 ILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQET 495

Query: 489 IREIL 493
             + L
Sbjct: 496 AAKYL 500


>gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
          Length = 492

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/512 (28%), Positives = 238/512 (46%), Gaps = 42/512 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +   + +I  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLIK-------ETIGNMDVEITGLEMDSRKITDGDLFICVSGI--DGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP- 114
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------MPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 115 -ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
              ++ +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHVKGL 222

Query: 233 LFEELLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIH 286
           LF  L        +  A++ ADD   +   K        V++ G   +  +  K +    
Sbjct: 223 LFSRLGNDLSTTDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNRADVQAKNITLSP 279

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR 
Sbjct: 280 KGIRFLVSSFNGEIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRM 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +  N +   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA
Sbjct: 340 EIIDEN-QDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDTKKRSIMGGIA 398

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDV 461
              +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+
Sbjct: 399 GSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAITHAINMASSNDI 458

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHET  I+ +       D +  R+ +
Sbjct: 459 VLIAGKGHETYQILKDSTIH-FDDKEKARQAI 489


>gi|259416449|ref|ZP_05740369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
 gi|259347888|gb|EEW59665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
          Length = 494

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/475 (37%), Positives = 266/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      + +I  ++ DSR +Q G++F A+ G++  G  F+ Q + QGA AI+  
Sbjct: 9   LSQLGLTARAGMDPQITGLAVDSREVQQGFVFAALPGSRVHGAKFVDQVLDQGAVAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +     A  R+   ++V ++ R+ LS  A+  +G  P  + AVTGT+GK+SV++F++
Sbjct: 69  TAGAEIAGEAIARAGAALVVAEDPRQALSGAAALWFGGQPPVMAAVTGTNGKTSVSTFLR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 129 MIWTELGHQAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +L ++  A+I   D    
Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   G  +++VG     I L  +      Q +  +   + F     L G FQ  N
Sbjct: 249 KMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVAAGL IA G D   V + L  L  V GR E   T   G  ++VDYAHT +++   +K
Sbjct: 309 VLVAAGLAIASGEDPVQVFDTLPHLSTVRGRMELAATRENGATVFVDYAHTPDAIATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD  IVTDDNPRSEDP  IRA ++ 
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGQAAHENADTVIVTDDNPRSEDPAAIRAAVMG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +  G+R EAI   ++ML   D L++ GKGHE+   +   +     D +  
Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEPGDALLICGKGHESGQTIGT-DVLPFDDVEQA 482


>gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
 gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
          Length = 483

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/504 (33%), Positives = 252/504 (50%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       +  +  +   I  V+ DSR I  G +F+A+ G + DGH FI
Sbjct: 1   MKLNELLKNIKP-------VAVIGEQSIDIKGVNIDSRKIAEGHLFIAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+AI QGA+AI+        D           + V++T       A+  YG   + +  +
Sbjct: 54  PKAIEQGAKAILCE------DMPEMKVEGVTYVKVESTEDAAGKVATLFYGDPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +  + ++ G     +      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKMGYKCGLLSTVCNYIEDEAIPADHTTPDPIELNELLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F+EL
Sbjct: 168 VNTGCEYAFMECSSHAIAQKRISGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDEL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + AI  ADD      M    N    V +   +       ++   H  + + + ++G
Sbjct: 228 -PKGAFAITNADDKNG---MIMVQNTKATVKTYSTRSAADFKARILECHF-EGMYLDIDG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +        G+F V N L   G    +G     +L  +  LH V GR E + +   G  
Sbjct: 283 HEVGV--QFIGKFNVSNLLTVYGAARMLGKQPEDILLVMSTLHSVSGRLEPIHSPE-GYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +LK I  +    G++I V G GG+RD+GKRP+M + A+  +D  I+
Sbjct: 340 AIVDYAHTPDALENVLKAIHEVLNGKGKLITVCGAGGNRDKGKRPLMAQEAVKQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  M  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLDGLNAQQLKKVISIVDRKEAIRTACMMAQKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T   +  G K    D +I+  I G
Sbjct: 460 TYQEIK-GVKYHFDDKEILNNIFG 482


>gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
 gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
          Length = 493

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/476 (37%), Positives = 262/476 (55%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +     R+  I  ++ DSR ++ G++F A+ G    G  FI  A+ QGA AI+  
Sbjct: 7   LAALGLTAQAGRQANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYALRQGAGAILTD 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++V ++ R+ L+  A+  +G  PE ++AVTGT+GK+SVA+F +
Sbjct: 67  ATGARLAQDFLSLSDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGTNGKTSVATFTR 126

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +R GL++  +G T    +++     TTP PI L + L+     GVTH ++EASSHGL
Sbjct: 127 QIWERMGLAAVNLGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVTHGAMEASSHGL 186

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q RLDG+ L+A  FTN  +DH+DYH +   YF AK  LF  +LP++  A+I  DD    
Sbjct: 187 AQRRLDGVHLMAAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGVAVINIDDPRGA 246

Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           E+   A   G  +++VG   G  + L         Q +    E +       L G FQ  
Sbjct: 247 EMAAIATERGQDLITVGRAPGADLRLIAQRFDATGQVLRFEWEDEVNQLRLDLIGGFQAE 306

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL I  G D+  V E L  +  V GR +   T   G  ++VDYAHT +++   +
Sbjct: 307 NVLLAAGLVIGAGADAEQVFEVLPDMRTVRGRMQLAATRDNGAAVFVDYAHTPDAVATAI 366

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR+I + G GGDRD+ KRP+MG+ A   AD  IVTDDNPRSE+P  IRA ++
Sbjct: 367 KALRPHVMGRLIAIVGAGGDRDRAKRPLMGQAAAAHADRVIVTDDNPRSENPASIRAAVM 426

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G P   + G+R EAI   ++ L   D L++ GKGHET  IV + +     D +  
Sbjct: 427 QGCPKATDVGDRAEAILRGVDALGPGDALLICGKGHETGQIVGD-DVLPFNDVEQA 481


>gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 1313]
          Length = 485

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 166/502 (33%), Positives = 261/502 (51%), Gaps = 34/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+DL        +  L++  ++   + +I +++ DSR  +AG +FV I G K DGH F
Sbjct: 1   MKLKDL--------VKGLNVLEVEGDMDVEIKDIAYDSRKAKAGSLFVCIEGFKVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           IPQAI  G  A +V     + D       +  ++ V +TR  L+  A   +G       +
Sbjct: 53  IPQAIENGTRAFLVQKDVDVPD-------DATVVRVKDTRYALASVADIFFGHPSSKFNL 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT GK++    ++ I +  G     +G  +  I         TTP    L +  S 
Sbjct: 106 VGITGTKGKTTTTYMIKSILEAFGQKVGLVGTIANMIGHEVLPTDRTTPESYDLQELFSE 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + V  V +E SSH L+ HR+   +   G FTNL RDH+D+H+T + Y NAK++LF  
Sbjct: 166 MVQKNVNSVVMEVSSHALELHRVSCCEYEIGVFTNLSRDHLDFHKTFENYLNAKIKLF-- 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
                   +I  D+ +  +V+  A    C V ++G   K  +    +    +    T+  
Sbjct: 224 --GMCKKGLINIDNEFGPKVVDSAR---CEVYTMGIDNKADLRAVDIVHHPDSVDFTVVS 278

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D    +PG+F VYNAL A G C  +G+    + + LEK+  VPGR E +    + 
Sbjct: 279 PWFTGDVRVNIPGKFSVYNALAAIGTCALMGVPFEYIKKGLEKVT-VPGRAEVLDIK-KD 336

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH+ +SLE IL  ++    GR++ VFGCGGDRD+ KRPIMG+I+  LAD  I+
Sbjct: 337 YTVMIDYAHSPDSLENILTTVKAYAPGRVVCVFGCGGDRDKTKRPIMGRISGQLADFTII 396

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+EDP+ I  +I  GI      +    +R EAI+ A+     +D++++AGKGHET
Sbjct: 397 TSDNPRTEDPDAIIRDIEEGIKQTGGLYTTITDRREAIKYALMNAKPKDIILLAGKGHET 456

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ +       + +++R+IL
Sbjct: 457 YIILKDKTIH-FDEREVVRDIL 477


>gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae L20]
 gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 500

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 240/485 (49%), Gaps = 22/485 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +      
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAK 78

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q  
Sbjct: 79  FAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL Q
Sbjct: 139 NLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R + +      FTNL RDH+DYH+T + Y  AK RLF EL       ++ ADD   +E 
Sbjct: 199 YRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSEL--DTKAQVLNADDEVGREW 256

Query: 257 MKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + +  +A       S   + KF+    V       ++       + +    L G F V N
Sbjct: 257 LAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNN 316

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
            L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE 
Sbjct: 317 LLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEK 376

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+
Sbjct: 377 ALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMAD 436

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G   +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D + 
Sbjct: 437 ILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQET 495

Query: 489 IREIL 493
             + L
Sbjct: 496 AAKYL 500


>gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
 gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
          Length = 508

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/502 (33%), Positives = 253/502 (50%), Gaps = 15/502 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+ K    + +     P    E+ +  ++++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLKELLAK----VADLSEFKPHPAFEKDVKGLATNSHACQTGDLFIGMPGTRVDGGDFW 56

Query: 61  PQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE--N 116
           P AIA GA A +VS  A      ++T     P ++   N     +  A+  YG   +   
Sbjct: 57  PSAIANGAVAALVSQQAAEKTPQTSTESPELPCVIPSVNMTTACAQVAAAFYGYPAQQLK 116

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK++    ++ + + S   +   G   T           TTP  + L + L+
Sbjct: 117 LVGVTGTNGKTTTTHLIEYLLECSDKPTVLFGTLYTRWLGSQITAAYTTPFAVELQQKLA 176

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G  +  +E SSH L Q R+         FTNL +DH+DYHQT + YF AK  LF 
Sbjct: 177 EAVKAGCQYGVMEVSSHALHQGRVLECPFDVAVFTNLTQDHLDYHQTMEDYFEAKALLFS 236

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   AII ADD+Y K +++R         S+      +   ++    N  +  +  
Sbjct: 237 PQYLQ-GRAIINADDSYGKRLIERLEADRVWSYSINDSTADLWAAQLSYEPNGVKGVLHT 295

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR- 354
              +  F  PL G++ + N L A G  +++G+D A ++  L +   VPGR E V  +S+ 
Sbjct: 296 PQGEAAFELPLVGQYNLSNLLAAIGAGLSLGLDLATMMAKLPEFLGVPGRMERVQISSQQ 355

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DLAD+ +
Sbjct: 356 DVSVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLADVVV 415

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+EDP +I  +I+ GI      I   +R  AI+ AI      D +++AGKGHE 
Sbjct: 416 VTSDNPRTEDPNRILEDILAGIDLEIKPIVMCDRAHAIQRAIAEAKPGDGVLIAGKGHED 475

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   EK    D +  RE L
Sbjct: 476 YQILGT-EKVHFDDREQAREAL 496


>gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 531

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 170/520 (32%), Positives = 259/520 (49%), Gaps = 39/520 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  LI     +  N +        +  +  +  +SR ++   +F AI GN  DGH+F+
Sbjct: 1   MKLSRLIDGLKADQRNPVLEITGAQGDPDVISIQYNSRLVKPQGLFTAIKGNAVDGHIFV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ +GA A+V                   ++ V ++R+ L+  AS  +G+  E +   
Sbjct: 61  QDAVKKGAAAVVTEEPVEA-------PIGVAVIRVKDSRRALANMASEFFGRPTEKLKLA 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V  F + +   +G     +G  S+      +++ +TTP  + L + L+ +
Sbjct: 114 GITGTNGKTTVTYFAEAMLGAAGCKVGIVGTVSSRWPGHEKESSVTTPESLELQETLARM 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GVTH  +E SSH L Q R    +  AG FTN+ +DH+DYH+  ++YF AK  LF++L
Sbjct: 174 VDAGVTHAIIEVSSHALTQSRPAFCQFDAGVFTNITQDHLDYHKDMESYFQAKRILFDDL 233

Query: 238 L----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           L     +   A+I  DD     + +        VL  G  +G  I    V A  +  +  
Sbjct: 234 LAASTKENKTAVINLDDPQGAVLCREVKTP---VLCTGLTEGSSIRSIDVKAGADGLKGV 290

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     +  F  P  G   +YN + AAG+ +A G+    V   L     VPGR E V  N
Sbjct: 291 METPAGELVFESPAVGRHNLYNLMSAAGVGLAFGLSLEEVEMGLNAAVNVPGRLEKV-EN 349

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                ++VDYAHT ++LE +L+ +R ++  +II VFGCGGDRD+GKRP MG  A   +D+
Sbjct: 350 GLDRHVFVDYAHTPDALENVLEALRRVSKAKIITVFGCGGDRDKGKRPKMGAAAARHSDL 409

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-------------------FIEKGNRIEAIRTAI 453
            +VT DNPRSEDPE I  +I+ GI G                   F+ + +R +AI TAI
Sbjct: 410 VVVTSDNPRSEDPEAIIDDILPGISGEGAQRLNASYCMMCSRKSAFMVEPDRRKAILTAI 469

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 D++++AGKGHET  IV NG +    D    R  L
Sbjct: 470 MSSGPGDLVLIAGKGHETYQIVKNG-RFAFDDRVEARNAL 508


>gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 478

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 203/470 (43%), Positives = 273/470 (58%), Gaps = 7/470 (1%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  +++DSR ++ G++F A+ G K DG  FIP AIA GA A++V    +++     +
Sbjct: 9   DVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLVPHGSTVE-----V 63

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                ++   N R+  +L AS  +G  P  + AVTGT+GK+S A F +QI  R G  S  
Sbjct: 64  PPQVALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAA 123

Query: 147 IGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG    I+    ++   TTP P  L   L+ L+  G+TH  +EASSHGLDQHRLDG+KL+
Sbjct: 124 IGTLGIIAPGWDNSGGLTTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRLDGVKLM 183

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A +FTNL RDH+DYH + QAY  AK+RLF E+LP+ + A+I AD   +   ++     G 
Sbjct: 184 AAAFTNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGI 243

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            VL  G   + + L       + Q++ + + G+      PL G FQ  NAL A GL +A 
Sbjct: 244 TVLGYGRAARDLRLAAARPTADGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALAC 303

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G D    LE L  L  V GR + V   + G  +YVDYAHT ++LE +LK +R   S R++
Sbjct: 304 GADPVTALEALGSLEGVHGRLQKVAARAHGAPVYVDYAHTPDALETVLKALRPHASRRLV 363

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           VVFGCGGDRD GKRP+MG I   LAD  IVTDDNPRSEDP  IRA +    P  IE G+R
Sbjct: 364 VVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGIEIGDR 423

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +AIR A+  L K DVLV+AGKGHE   IV         D +  R  + L
Sbjct: 424 RDAIRAAVSGLQKGDVLVIAGKGHEKGQIVGT-TVLAFDDAEEARTAVDL 472


>gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 500

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 240/485 (49%), Gaps = 22/485 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +      
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAK 78

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q  
Sbjct: 79  FAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL Q
Sbjct: 139 NLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R + +      FTNL RDH+DYH+T + Y  AK RLF EL       ++ ADD   +E 
Sbjct: 199 YRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSEL--DTKAQVLNADDEVGREW 256

Query: 257 MKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + +  +A       S   + KF+    V       ++       + +    L G F V N
Sbjct: 257 LAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNN 316

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
            L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE 
Sbjct: 317 LLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEK 376

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+
Sbjct: 377 ALQAARLHTEGELYCIFGCGGDRDAGKRPMMAVIAEELADKVIATDDNPRTEDNAKIMAD 436

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G   +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D + 
Sbjct: 437 ILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQET 495

Query: 489 IREIL 493
             + L
Sbjct: 496 AAKYL 500


>gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
 gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
          Length = 488

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 261/505 (51%), Gaps = 32/505 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D++YK          I      +  I+ +  DSR + AG +FVAI G + DGH +I 
Sbjct: 3   NLKDILYKVKL-------ISVSGATDIAIDAIQFDSRIVGAGDVFVAIKGTQVDGHEYIS 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           +AI QGA AIV        D  + I      +  DN+ K L + A+  +G   E +  +A
Sbjct: 56  KAIEQGAVAIVCE------DIPSDIHPQVTYVQTDNSAKALGVMAANYFGHPSEKLKLIA 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++  S + Q+    G  +  I      I++       TTP  + L   L  + 
Sbjct: 110 VTGTNGKTTTVSLLHQLFMNLGYHTGMISTVQNQINNAVIPATHTTPDALQLNSLLKKMV 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   V +EASSH ++Q R+ G+KL    FTN+  +H+DYH+T   Y  AK +LF++L 
Sbjct: 170 DSGCNIVFMEASSHAIEQERMAGLKLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDDL- 228

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P ++ A++  DD   K  M    N      +   +   I+  KV +    Q + ++++ K
Sbjct: 229 PSDAFALVNVDD---KRGMVMLQNCKASKYTYSLKMMAIYKAKVLSNSI-QGLELNIDQK 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  F     G F  YN L A      +  +S  VL +L ++ +  GRFE V  N+ G   
Sbjct: 285 DVWFRQ--IGYFNAYNLLAAYATAHLLEEESEEVLMNLSQIELKNGRFEQVP-NNAGITA 341

Query: 359 YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VDYAHT ++LE +L+ I    +G  +++ V GCGG+RD  KRP+M +IA   +D  I+T
Sbjct: 342 VVDYAHTPDALENVLQTIDNFRTGNEQVLTVVGCGGNRDTTKRPLMAEIACRFSDRVILT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR E+PE I A++  G+P           +R EAI+ A     K D+++VAGKGHET
Sbjct: 402 SDNPRFEEPEAIIADMQKGVPVSQVRKVTNLPDRKEAIKLACSFAQKGDIILVAGKGHET 461

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
              +  GE+    D +++RE+L LI
Sbjct: 462 YQEIK-GERSHFDDKEVVREMLSLI 485


>gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 495

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/498 (32%), Positives = 249/498 (50%), Gaps = 28/498 (5%)

Query: 12  PELINQLSIFP----MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +L + L++ P    +   ++ I +V++DSR + AG +F+ + G   DGH F+  A  +G
Sbjct: 3   KQLASLLALLPQAEVIGSADKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A A +V       D  A +     ++ V +TR+ + L     Y      +  + VTGT+G
Sbjct: 63  AVAALVE------DVPAEVPQGVTLIKVADTREAMELVTPYFYDYPGRKLRMIGVTGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  + ++ I +++G     IG  +  I+    ++  TTP  + L K L  +   G  +
Sbjct: 117 KTTSTNIIRLILRKAGYKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
             +E SSH L   R+ GI+      TN+ +DH+D+H+T + Y +AK  LFE L     P 
Sbjct: 177 CVMEVSSHALALKRVAGIEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPN 236

Query: 244 --AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             A+   DD  S  + +R       VL+ G      I+           Q+ +     + 
Sbjct: 237 KNAVFNMDDPSSAIIRERTK---ANVLTYGEGHDNDIYPLSFTVEPKHMQLLLHTPVGEM 293

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    + GEF VYN +   G  +A  ID  ++   L+    VPGRF+ V    +   + V
Sbjct: 294 DLELKITGEFNVYNVMGVIGAMLAENIDKDIIGSVLDGFDGVPGRFQLV-EAGQPYTVIV 352

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + LE +LK  R+IT G++ VVFGCGGDRD  KRP+MG +AL+LAD  +VT DNP
Sbjct: 353 DYAHTPDGLENVLKTARSITRGKLWVVFGCGGDRDNKKRPLMGALALELADNIVVTSDNP 412

Query: 421 RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           R+EDPE I  EI   +             +R EAI  A+      DV+++AGKGHE   I
Sbjct: 413 RTEDPELIIDEIFTALQNVPAGKHVTRLSDRREAICYALAEAADNDVILIAGKGHENYQI 472

Query: 475 VTNGEKKMSVDCDIIREI 492
           + +       D +++ E 
Sbjct: 473 LKDRTIH-FDDKEVVMEY 489


>gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Heliobacillus mobilis]
          Length = 528

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/512 (31%), Positives = 253/512 (49%), Gaps = 33/512 (6%)

Query: 1   MKLQDLIY----KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M+L  ++     ++         +  +   +++I+ ++ DSR +  G++F  I G K DG
Sbjct: 23  MELSKVLANVEVREIRWTGETDDLQRLMQPKQEISGLAYDSRQVAPGFLFFCIPGQKTDG 82

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F  QA+  GA  +VV     L+          P + V +TR+ L+L A   YG   E+
Sbjct: 83  HNFAAQAVEGGAAVLVVERFVDLK---------VPQIRVTSTRESLALAAGAFYGHPSEH 133

Query: 117 ILAVTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
           +L +  T           ++ + +  G S   IG     +         TTP    L K 
Sbjct: 134 LLMIGVTGTNGKTTTTYMIEAVLKAKGYSVGVIGTIGNQLGEKRWPAAHTTPESSDLQKL 193

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +   G   V +E SSH LDQHR+ G+     +FTNL +DH+DYH T + Y  AK +L
Sbjct: 194 LAEMRDDGADAVVMEVSSHSLDQHRVLGVNFDIAAFTNLTQDHLDYHHTLENYRAAKGKL 253

Query: 234 FEELLPKESP------AIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIH 286
           F EL  KES       A+I ADD  +   +     +    ++ G  +   I  K      
Sbjct: 254 FRELGQKESKKGIVKRAVINADDPSADYFL---QVSSVPAVTYGVEEDAAIRAKDWDVTP 310

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              + T+   G   D    L G F + N+L A  +   +G++   ++E L+ L  VPGRF
Sbjct: 311 QGARCTVQYPGGTVDMTLQLTGRFNISNSLAAFTVGWIVGMEPEQIVEALQSLRGVPGRF 370

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V    +   + VDYAHT + L  +L     +  G+I+ VFGCGGDRD+ KRPIMG + 
Sbjct: 371 ESVD-QGQPFSVIVDYAHTPDGLVNVLNTAEALAEGKIVTVFGCGGDRDRTKRPIMGAVV 429

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDV 461
            +++DIA+VT DNPR+E+P +I  +I+ G+       +  + +R +AI  A+ M N  D+
Sbjct: 430 AEMSDIAVVTSDNPRTENPHRIIEDILPGVQAVPGIEYKVEPDRKKAIALALSMANPGDL 489

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHE   IV   E     D ++ R++L
Sbjct: 490 VMIAGKGHENYQIVGK-EVLPFDDREVARQVL 520


>gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
 gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
          Length = 496

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/481 (34%), Positives = 232/481 (48%), Gaps = 19/481 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++ +++ DSR +QAG +FVA+ G++ DG  FIP AI QGA  I+  +     +     +
Sbjct: 19  TELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEIELDPK 78

Query: 88  ---------SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQI 136
                    +   ++ V    K LS  A  LY      +    +TGT+GK++ A  + Q 
Sbjct: 79  FAKFNLDRTACCKVVSVPRLPKLLSEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQW 138

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G     +    Q+   TT S I +   L+     G    ++E SSHGL 
Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLA 198

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R + +      FTNL RDH+DYH T + Y  AK RLF EL  K     I ADD   +E
Sbjct: 199 QFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQV--INADDEIGRE 256

Query: 256 VMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + +  NA        + G  +F+    V        +       + +    L G F V 
Sbjct: 257 WLTQLPNAVAVSTDPKFAGNHQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVN 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A    +A+G D   +++    L  V GR E + T      + VDYAHT ++LE  L
Sbjct: 317 NLLTAFAGLLALGFDIQELVKTAPNLVGVAGRMECI-TAPNKPMVIVDYAHTPDALEKAL 375

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R    G +  +FGCGGDRD GKRP+M  IA  L D  I TDDNPR+ED +KI A+I+
Sbjct: 376 QAARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIV 435

Query: 434 HGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            G     +   NR EAI+TAIE     DV+++AGKGHE   I+   EK    D +  R+ 
Sbjct: 436 KGFSKPQQIIHNREEAIKTAIEQAKATDVILIAGKGHEDYQIIGT-EKLHFSDQETARKY 494

Query: 493 L 493
           L
Sbjct: 495 L 495


>gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
          Length = 493

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 149/512 (29%), Positives = 238/512 (46%), Gaps = 42/512 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP- 114
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 115 -ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
              ++ +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSL 222

Query: 233 LFEELLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIH 286
           LF  L        +  A++ ADD   +   K        V++ G + G  +  K +    
Sbjct: 223 LFARLGNDLSTTDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNGADVQAKNITLSP 279

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR 
Sbjct: 280 KGIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKSIEGRM 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +  N +   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA
Sbjct: 340 EIIDEN-QDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIA 398

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDV 461
              +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+
Sbjct: 399 GSYSDFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDI 458

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHET  I+ +       D +  R+ +
Sbjct: 459 VLIAGKGHETYQILKDSTIH-FDDKEKARQAI 489


>gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 500

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 240/485 (49%), Gaps = 22/485 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +      
Sbjct: 19  KPLKQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAK 78

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q  
Sbjct: 79  FAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL Q
Sbjct: 139 NLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R + +      FTNL RDH+DYH+T + Y  AK RLF EL       ++ ADD   +E 
Sbjct: 199 YRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSEL--DTKAQVLNADDEVGREW 256

Query: 257 MKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + +  +A       S   + KF+    V       ++       + +    L G F V N
Sbjct: 257 LAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNN 316

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
            L A    + +G D   ++E    L  V GR E V +         + VDYAHT ++LE 
Sbjct: 317 LLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEK 376

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+  R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+
Sbjct: 377 ALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMAD 436

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++G   +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D + 
Sbjct: 437 ILNGFVQVEKVQVIHDREQAIKTAIEQTNEKDVILIAGKGHEDYQIIGT-TKHHFSDQET 495

Query: 489 IREIL 493
             + L
Sbjct: 496 AAKYL 500


>gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
 gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
          Length = 484

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 172/502 (34%), Positives = 272/502 (54%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   + +  +
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG  +  I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K         +V +   + +      ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +EG + +F   +PGE+ +YN+L        + I    + E L  + V+PGR E V     
Sbjct: 283 LEGIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKN 340

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+  +    F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ + E     + +++ +IL
Sbjct: 461 YQILKD-ETIHFDEREVVYDIL 481


>gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 484

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 172/502 (34%), Positives = 272/502 (54%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   + +  +
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG  +  I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ G++   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K         +V +   + +      ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +EG + +F   +PGE+ +YN+L        + I    + E L  + V+PGR E V     
Sbjct: 283 LEGIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKN 340

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+  +    FI + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFIIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ + E     + +++ +IL
Sbjct: 461 YQILKD-ETIHFDEREVVYDIL 481


>gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
 gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
          Length = 477

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/470 (35%), Positives = 237/470 (50%), Gaps = 12/470 (2%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + ++SDSR + AG +FVA  G+  DG  +IPQAIA GA A++  +    + FS       
Sbjct: 15  SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEA----EGFSWPTDLQA 70

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L V + RK     A   YG       ++ VTGT+GK+S   ++          +  IG
Sbjct: 71  VNLPVKDLRKQAGEIADEFYGHPSRALWMVGVTGTNGKTSCTQWLTHCLNSLQRKTAVIG 130

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                          TTP PI L   L+    QG    ++E SSHGLDQ R++G+     
Sbjct: 131 TLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGRVNGVHFDVA 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  AK RL E   P    A++ A+DAY    ++   + G  V
Sbjct: 191 VFTNLTRDHLDYHGDMDSYAAAKRRLME--WPGLKLAVLNAEDAYGLTFLQALRSEGRPV 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G Q   +H   +       Q++++    D      + G F  YN L      +A+ +
Sbjct: 249 LSYGMQSGDVHSTSLHLHETGMQMSVTTPWGDVTLQASVMGRFNAYNLLAVLATLLAMDV 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                 + +  L  VPGR E  G N+    + +DYAHT ++LE  L+ +R  T G++  V
Sbjct: 309 PLEAAAQAIATLKPVPGRMEQYGGNA-MPVVVIDYAHTPDALENALQALREQTRGKLWCV 367

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRI 446
           FGCGGDRD GKRP+MG IA  LAD  +VT DNPRSE+P+ I A+I   +    +   +R 
Sbjct: 368 FGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGRNHQIMVDRR 427

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            AI  AIE     D+++VAGKGHET   +  G +    D D++  +LG +
Sbjct: 428 AAIAHAIEQAAPGDIVLVAGKGHETYQEIK-GVRHPYSDVDVVTTLLGAV 476


>gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
          Length = 508

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/515 (30%), Positives = 260/515 (50%), Gaps = 43/515 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         +++  ++       + +I+ ++ DSR ++ G +F A+ G   DGH + 
Sbjct: 1   MKLS--------QIVADVTSQGELAADVEISHLAYDSRCVRPGTLFFALRGVLVDGHDYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             A+ +GA A+VV     L D           +VVD++R  ++  A+  Y    + +L  
Sbjct: 53  KSAVERGAVAVVVEQPVDLPD-------EIVQVVVDDSRYAMARCAACFYDYPAQGMLIV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++   ++ + +++G +   +G  S  +   A +   TTP  + L + L+  
Sbjct: 106 GVTGTNGKTTMTYLLESVLKQAGYTPAVVGTISNRMGDDAVEAEHTTPESLDLQRILAEF 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
            SQG   + +E SSH L Q R+ G+      FTNL  +H+DYH+  ++YF AK RLF+E 
Sbjct: 166 KSQGADALVIEVSSHALMQSRVVGLTFDVAVFTNLTPEHLDYHKNMESYFAAKTRLFKEP 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISV 295
            +  +  A++  DD Y  ++++  +      LSVG ++G  + +  V         T+  
Sbjct: 226 QIYGDFTAVVNTDDPYGAKLVRELNEP----LSVGMHRGADVRVCDVEQTMQGTVATLET 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +     PL G F + N L A G  + + +    + + L   + VPGR E V  N+ G
Sbjct: 282 PQGEITVRSPLVGPFNLENLLCAVGAGLVLDLPITTIEQGLAAANRVPGRLEPVD-NTLG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I VDYAHT ++L   L+ +  +   RII VFGCGGDRD  KRP MG++A   +D++IV
Sbjct: 341 ALIVVDYAHTGDALAKALEAMAALKPQRIITVFGCGGDRDTLKRPAMGEVAGRYSDLSIV 400

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLNK 458
           T DNPR+E+P KI  +I  GI                   ++   +R EAI  A+  L  
Sbjct: 401 TSDNPRTENPAKIIDDIKVGIERICPNLAVDGDPDSVGKCYVVIEDRHEAIVYAVNQLRA 460

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            D+L++AGKGHE   ++   +K    D + +R  L
Sbjct: 461 GDLLLIAGKGHEDYQVIGT-QKIHFDDREQVRLAL 494


>gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 488

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 238/478 (49%), Gaps = 13/478 (2%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                + E++ DSR  +AG +FVAI G++ DG  +IPQA+  GA A++  +    Q    
Sbjct: 13  AENVNLTEMTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQHLQV 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
                 P++      + LS  A   YG+  +   ++ VTGT+GK++ A  + Q  +  G 
Sbjct: 73  RYEQQVPLIAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKILGH 132

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +S  +G     +    ++   TT S + +  +L+   +QG    ++E SSHGL QHR++ 
Sbjct: 133 TSAVMGTIGNGLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVSSHGLVQHRVEA 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   A  FTNL RDH+DYH T + Y  AK RLF EL       II ADD      +    
Sbjct: 193 VHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFSEL--DSRHHIIDADDPVGAAWLAEMP 250

Query: 262 NAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A     +  +   Q K++    V   H    +       + +    L G F V N L+ 
Sbjct: 251 EAVAVSANADFAPRQAKWLKAVNVSFNHKGASIQFESSWGNGELQSALIGAFNVSNLLLI 310

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +A+G D A ++    KL  V GR E +    +   + VDYAHT ++LE  L+  R 
Sbjct: 311 MATLLALGYDLAELIGSAHKLTGVCGRMEMLHAPHK-PTVIVDYAHTPDALEKALQAARL 369

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              G++  +FGCGGDRD GKRP+M KIA  LAD  I TDDNPR+ED  +I A+I+ G   
Sbjct: 370 HCHGKLWCIFGCGGDRDSGKRPLMAKIAEQLADKVIATDDNPRTEDHTQIMADILKGFIH 429

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                    R EAI TAI+   + DV+++AGKGHE   I+    K    D ++ R  L
Sbjct: 430 PQAVQVIHQREEAIATAIQSAVENDVILIAGKGHEDYQII-GKTKHHFSDQEVARHYL 486


>gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
 gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
          Length = 493

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/502 (31%), Positives = 247/502 (49%), Gaps = 34/502 (6%)

Query: 1   MKLQDLI---YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKLQ+L+     +  ELIN+            I  +  DSR ++ G +FV I G   DGH
Sbjct: 3   MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKKGSLFVCIKGYTVDGH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115
            +  +A+  GA AIV     ++ +         P+++V ++++ L+  A   Y +  H  
Sbjct: 54  DYAEKAVKSGATAIVAEHPLNITE--------VPVIIVKHSQRALARIADAFYEQPTHKL 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
           N++ +TGT+GK+S    ++Q+ +++   +  IG     ++    D + TTP  + L K  
Sbjct: 106 NLIGITGTNGKTSTTHMIEQMMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  Q V    +E SSH L   R+ G       FTNL +DH+DYH T + Y +AK  LF
Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225

Query: 235 EEL-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            +L       K   AI+ ADD  S    ++   A     ++  +   +  K +  +    
Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYF-EKVTAAEVMTYALERKADVM-AKNIQIMPKGT 283

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q  +            L G+F VYN L A  + I  G+    ++  +E+L  V GRFE V
Sbjct: 284 QFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELEGVKGRFELV 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT +SLE +L   + +T G+I  V GCGGDRD+ KRP M +IA+  
Sbjct: 344 NC-DQDFPVIVDYAHTPDSLENVLTTCKELTEGKIFCVIGCGGDRDKTKRPQMAQIAVKY 402

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  + T DNPRSEDP  I  ++ +G+P   +    NR +AI  AI    K D +++AGK
Sbjct: 403 ADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGK 462

Query: 468 GHETVHIVTNGEKKMSVDCDII 489
           GHET  I+ +       D  + 
Sbjct: 463 GHETYQIIDDQVYD-FDDAKVA 483


>gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
          Length = 501

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/485 (36%), Positives = 261/485 (53%), Gaps = 8/485 (1%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            + +  L +     R   I  ++ DSR ++ G +F A+ G +  G  FI  A+  GA AI
Sbjct: 6   RKSLTDLGLTAQGGRRADITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAI 65

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +  +A +        +S+  ++V ++ R+ L+  A+  +G  PE ++ VTGT+GK+SVAS
Sbjct: 66  LTDAAGARIAADVLAQSDAALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVAS 125

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           F +QI    G  +  IG T    ++      TTP PI L + L+     GVTH ++EASS
Sbjct: 126 FCRQIWCELGYEAVNIGTTGVEGAYEAPLAHTTPEPITLHRVLAECEVAGVTHAAMEASS 185

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RLDG+ L+A  F+N  +DH+DYH T   YF AK  LF  +LP++  A+I  DD 
Sbjct: 186 HGLEQRRLDGVHLVAAGFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVINIDDP 245

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               + + A   G  +++VG + G  +H++        Q +    +G+       L G F
Sbjct: 246 KGPAMAEIARARGQDLITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLNLMGGF 305

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q  N  +AAGL IA G D   V + L  +  V GR +   T   G  ++VDYAHT +++ 
Sbjct: 306 QGENVALAAGLVIAAGSDPDRVFDTLRHMKTVRGRMQLAATRRNGAAVFVDYAHTPDAVS 365

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +R    GR++ + G GGDRD  KRP+MG  A   AD+ IVTDDNPRSEDP  IRA
Sbjct: 366 TALSALRPHVMGRLVAIIGAGGDRDTAKRPLMGAAAAQNADLVIVTDDNPRSEDPAAIRA 425

Query: 431 EIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
            ++ G+          E G+R EAI   ++ML   D L++ GKGHET  IV + +     
Sbjct: 426 AVMAGVRDAGGADWATEVGDRAEAILRGVDMLGPGDALLICGKGHETGQIVGD-DVFPFD 484

Query: 485 DCDII 489
           DC+  
Sbjct: 485 DCEQA 489


>gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
 gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
          Length = 497

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 181/480 (37%), Positives = 267/480 (55%), Gaps = 2/480 (0%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             + + +L +      +  +  +S DSR  + G +F A+ G    G  FI  A+ +GA A
Sbjct: 7   MRKSLTELGLTAQGGAQALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGAAA 66

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +  +         +   ++V ++ R+ LS  A+  YG  PE ++AVTGT+GK+SVA
Sbjct: 67  VLTDAEGAALARDLLDGAAVALVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTSVA 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           SF +QI    G  +  +G T    ++      TTP PI L + L+   + GVTH ++EAS
Sbjct: 127 SFTRQIWAELGFEAVNLGTTGVEGAYQVPLAHTTPEPITLHRVLAECQAAGVTHAAMEAS 186

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL Q RLDG++L A  FTN  +DH+DYH +   YF+AK  LF  +LP++  A+I  DD
Sbjct: 187 SHGLAQRRLDGVQLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINIDD 246

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               E+ + A + G  +L VG +    + L+        Q +    EG+ +    PL G 
Sbjct: 247 PRGAEMAEIARHRGQGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLIGG 306

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           FQ  N L+AAGL IA G D + V + L ++  V GR E   T   G  ++VDYAHT +++
Sbjct: 307 FQGENLLLAAGLAIATGADPSRVFDTLPQMRTVRGRMELAATRENGAAVFVDYAHTPDAV 366

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              ++ +R    GR+I + G GGDRD GKRP+MG+ A + AD  IVTDDNPRSEDP  IR
Sbjct: 367 GTAIRALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAGEHADQVIVTDDNPRSEDPALIR 426

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           A ++ G P  +E G+R EAI   ++ML   D L++ GKGHET   V + +     DC+  
Sbjct: 427 AAVLEGCPEALEMGDRAEAILRGVDMLGPGDALLILGKGHETGQTVGD-DVLPFDDCEQA 485


>gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 501

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/483 (32%), Positives = 234/483 (48%), Gaps = 22/483 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI---- 86
            +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +         
Sbjct: 22  KQITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGAGLVLAEADEGQTEIELDAKFAK 81

Query: 87  ----RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
               R++  ++ V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     
Sbjct: 82  YNLDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLL 141

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL Q+R 
Sbjct: 142 GGKSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQYRA 201

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + +      FTNL RDH+DYH+T + Y  AK RLF EL       ++ ADD   +E + +
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSEL--DTKAQVLNADDEVGREWLAK 259

Query: 260 AHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             NA       S     KF+    V       ++       + +    L G F V N L 
Sbjct: 260 LPNAVAVSTDASFSSDHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLT 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILK 374
                + +G D   ++E    L  V GR E V +         + VDYAHT ++LE  L+
Sbjct: 320 TLASLLVLGHDLQKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQ 379

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A I+ 
Sbjct: 380 AARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNTKIMANILK 439

Query: 435 G---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G   +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   +
Sbjct: 440 GFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAK 498

Query: 492 ILG 494
            L 
Sbjct: 499 YLA 501


>gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
 gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
          Length = 507

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/517 (32%), Positives = 254/517 (49%), Gaps = 38/517 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E  +             +  V+ DSR ++ G +FVAI G KEDG  FI
Sbjct: 1   MKLTDVLAGCGAEQTSGGR------SAVDVTGVTQDSRRVKPGDLFVAIPGTKEDGAQFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+++GA A+V               S  P   V + RK L+L A+  YG+  + +  L
Sbjct: 55  GEAVSRGAVAVVSEKPVP--------SSQVPFFKVSSARKALALIAANFYGRPADQLTLL 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ +   +  S+  IG      +    +   TTP P+ L + L  +
Sbjct: 107 GITGTNGKTTTSYLLEAMSTAAYASTGVIGTLGYKFAGRTVECANTTPDPLELHRILREM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V +E SSH L Q R+ G+   A  F+NL RDH+DYH+  + YF +K +LF E 
Sbjct: 167 VEAGVETVIMEVSSHALAQERVHGLTFKAAGFSNLSRDHLDYHKDMEDYFQSKRKLFAEN 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
           L     A++  DD Y+  +                QG   I    V       +  +   
Sbjct: 227 LSATGVAVVNGDDTYASRIYNEQRGQKRMAWKFSRQGSGEISAADVSFSLQGIKGVLKTP 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D      L G   + N L+A G+ +  G     V E +E++  V GR E V      G
Sbjct: 287 AGDIPLKSKLLGPHNLENILLAVGIGLGAGFARRDVQEGIERMMPVAGRMERVENYGPSG 346

Query: 357 R--IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++L+  ++  R++  GR+I VFGCGGDRD+GKRP+MG +A + AD+A+
Sbjct: 347 APAVLVDYAHTDDALKRSIEAARSLAKGRVIAVFGCGGDRDKGKRPLMGAVAGEGADLAV 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLN 457
           VT DNPR+EDPE+I +++  GI                  G++   +R  AI  AI + +
Sbjct: 407 VTSDNPRTEDPEEIISQVTAGIEKSGLRRISAGKAKSGEKGYLVDADRRAAIEQAISLAS 466

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             DV+++AGKGHET   V   EK +  D  +  + L 
Sbjct: 467 ADDVVLIAGKGHETYQQVGE-EKLVFDDRQVAAKALA 502


>gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
 gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
          Length = 477

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/470 (35%), Positives = 236/470 (50%), Gaps = 12/470 (2%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + ++SDSR + AG +FVA  G+  DG  +IPQAIA GA A++  +    + FS       
Sbjct: 15  SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEA----EGFSWPADLQA 70

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L V + RK     A   YG       ++ VTGT+GK+S   ++          +  IG
Sbjct: 71  VNLPVKDLRKQAGEIADEFYGHPSSALWMVGVTGTNGKTSCTQWLTHCLNSLQRKTAVIG 130

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                          TTP PI L   L+    QG    ++E SSHGLDQ R++G+     
Sbjct: 131 TLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGRVNGVHFDIA 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  AK RL E   P    A++ A+DAY    ++   + G  V
Sbjct: 191 VFTNLTRDHLDYHGDMDSYAAAKRRLME--WPGLKLAVLNAEDAYGLTFLQALRSEGRPV 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G Q   +H   +       Q++++    D      + G F  YN L      +A+ +
Sbjct: 249 LSYGMQSGDVHCTSLHLHETGMQLSVTTPWGDVTLHAAVMGRFNAYNLLAVLATLLAMDV 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                 + +  L  VPGR E  G N+    + +DYAHT ++LE  L+ +R  T G++  V
Sbjct: 309 PLEAAAQAIATLKPVPGRMEQYGGNA-MPVVVIDYAHTPDALENALQALREQTRGKLWCV 367

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446
           FGCGGDRD GKRP+MG IA  LAD  +VT DNPRSE+P+ I A+I   +        +R 
Sbjct: 368 FGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGRNHQIMVDRR 427

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            AI  AIE     D+++VAGKGHET   +  G +    D D++  +LG +
Sbjct: 428 AAIAHAIEQAAPGDIVLVAGKGHETYQEIK-GVRHPYSDVDVVTTLLGAV 476


>gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
 gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
          Length = 484

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 257/505 (50%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       I      + +I  V+ DSR I+ G +F+A+ G + DGH FI
Sbjct: 1   MKLSELLKNVSP-------IAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+ QGA A++      L++   T+  N   + V +T +     A+  YG     +  +
Sbjct: 54  GKAVEQGAAAVL------LENLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G  +  +      I+        TTP PI L   L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G  +  +E SSH + Q R+ G+  + G FTNL RDH+DYH+T + Y NAK   F+ L
Sbjct: 168 AAAGCEYAFMECSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + A+  ADD     +++    A  +  S+     F   +      + + + + ++G
Sbjct: 228 -PKNAFALTNADDKNGMFMVQN-TKASVKTYSIKRMADF---RAKILECHFEGMYLEIDG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+        G+F V N L   G  + +G     +L  +  L  V GR E + +   G  
Sbjct: 283 KEVGV--QFIGKFNVSNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSPE-GFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++L  +L  I  +     G +I V G GG RD+GKRP+M + A+  +D  I
Sbjct: 340 AVVDYAHTPDALANVLAAIHDVLDSKGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EAIRTA  M  K DV++VAGKGH
Sbjct: 400 LTSDNPRDEDPQAIIDDMLAGLDSTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    + NG K    D ++IREI G
Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFG 483


>gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 496

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/509 (32%), Positives = 257/509 (50%), Gaps = 32/509 (6%)

Query: 1   MKLQDL--IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKLQ L  I    PE           +   ++  V +D+R +  G +FVAI GNK DGH 
Sbjct: 1   MKLQHLFSILPGIPE---------NAFSHIEVTGVFNDARLVVPGSVFVAIRGNKLDGHT 51

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A+A+GA A+VV     + +    +     ++ V N+R+ L + ASR Y    + + 
Sbjct: 52  FIPDAVAKGAAALVVEDKAKIPEGYEGV-----VVQVPNSREVLDVLASRFYWDPGQELF 106

Query: 119 AV--TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALS 175
            V  TGT+GK+SV    + I     + +  IG     +      + +TTP P++L K L 
Sbjct: 107 CVGVTGTNGKTSVTYMTEAILNHGKIPTGVIGTVNHHLGDQVWPSEMTTPDPVFLQKRLR 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S G   V++E SSH LDQ R+D +      FTNL RDH+DYH T ++Y  AK RLF 
Sbjct: 167 EFRSAGALAVAMEVSSHALDQRRVDSVPFNTVIFTNLTRDHLDYHNTMESYLEAKQRLFT 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +LL K      +A    + +  +R   A   V  + G +   I  + +          + 
Sbjct: 227 DLLWKTHKRPCFAIVNTADKFGRRLRVADPAVLWTYGEKDSDIRYEILKMDFALTHFKVW 286

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +   P+ G   V NAL A G  ++ G+   + +E L++   VPGR + V  N +
Sbjct: 287 TPVGEGEVRLPMSGTHNVMNALAALGAGLSAGLPLNICIEALDRFTGVPGRLQSVP-NDK 345

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDL 409
              ++VDYAHT ++LE +L  +  +        RI  +FGCGGDRD+GKRP+M ++AL  
Sbjct: 346 NLSVFVDYAHTPDALENVLMALTKVRENLQSQSRIWTIFGCGGDRDKGKRPLMAEMALKY 405

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +D  ++T DNPR+EDP+ I  +I+ G+            +R +AI   ++   + DV+++
Sbjct: 406 SDEVVITSDNPRTEDPQTIIQDILAGVGGANKAKATTVVDRKDAITQTLKRAQEGDVILI 465

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHE   I+   +K    D  +  E L
Sbjct: 466 AGKGHEDYQIIGT-QKFPFSDVKVAEEAL 493


>gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
          Length = 483

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 205/477 (42%), Positives = 275/477 (57%), Gaps = 17/477 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  V++DSR ++AG +F A+ G K DG             A  + +  +       +
Sbjct: 15  DPEITGVTADSRKVRAGTLFAALPGTKVDGAS---------FAAAAIQAGAAAVIADRDL 65

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P +V  + R+  +L A+  +G+ P+  +AVTGT+GK+SVA+F +Q+  R+G +S  
Sbjct: 66  GLPVPTIVAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSAS 125

Query: 147 IGPTSTISSFAQDNRLT-------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G      S               TP    +A+ L+ ++  GV+H ++EASSHG+DQ RL
Sbjct: 126 MGTLGVTVSRPDGTHEQLTPPGLTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRRL 185

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG+KL A  F NL +DH+DYH T +AY  AK+RLFE LLP+   A++ AD          
Sbjct: 186 DGVKLTAAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNADSDAFPAFAAA 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A  AG  V+ VG  G  + L K   +   Q + I  EG+  D   PL G FQ  NALVAA
Sbjct: 246 AVIAGQWVMPVGETGATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALVAA 305

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           GLC A G+    V   LE L   PGR + VG  +RGG  YVDYAHT + LE +LK +R  
Sbjct: 306 GLCWAAGLTLEEVFAGLEALEGAPGRLQRVGQGARGGEAYVDYAHTPDGLETVLKALRPH 365

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             GR+IVVFG GGDRD+GKRP+MGK+A +LAD+AIVTDDNPRSE P  IRAE++ G PG 
Sbjct: 366 VRGRLIVVFGAGGDRDRGKRPLMGKVAGELADVAIVTDDNPRSEVPAAIRAEVLAGCPGA 425

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            E G+R EAIR A+ ML   D+LVVAGKGHE   IV  G      D     + L L+
Sbjct: 426 AEIGDRREAIREAVAMLRDGDILVVAGKGHEQGQIV-GGVTHPFDDVAETAQALELV 481


>gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 489

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/502 (32%), Positives = 258/502 (51%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +LI     EL +          +R+I+ ++ DSR ++ G +F+ I G K DGHLF 
Sbjct: 1   MKLVELIKNLTIELQDGP-------LDREISGIAYDSRRVKPGDLFICISGLKSDGHLFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAI  GA A++                   +L   +TR  L+L A+  YG+  +   ++
Sbjct: 54  GQAIENGAVAVLAERQLD-------TGGKATLLTTPDTRSALALLAANYYGRPSKSIRVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++    ++ I + +G  +  +G   + +    ++ + TTP  + +   ++  
Sbjct: 107 AVTGTNGKTTTTDLIKAILEEAGKKTAIMGTLYAQVGEIQREMQHTTPEALEIESFMALC 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   ++ +E SSH L   R+  I      FTNL +DH+D+HQ    Y  AK++LF+ +
Sbjct: 167 REEKADYIVMEVSSHALQLQRVAEIDFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMI 226

Query: 238 LP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K++ AII  DD +++E+  +A    CR   +  +  +    ++    +     +   
Sbjct: 227 KEEKQNYAIINIDDPWAEEIF-QAATIPCRSYGIKKRSDYQ-AGELKIDLDGSSFRLHYG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L G F +YNAL A    +  GID  L+   L ++  VPGRFE V    +  
Sbjct: 285 DNSLMINMKLIGLFSIYNALAAISFALQEGIDPGLIQSALARVEGVPGRFEKVDC-GQDF 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE IL+  R +   R+I VFGCGGDRD+ KRP+MG+IA   +D  +VT
Sbjct: 344 AVIVDYAHTPDGLENILQTSRELGKKRLICVFGCGGDRDRSKRPLMGEIAAKYSDFCVVT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPRSEDP  I AEII G+       +    +R EAIR AI +    D++V+AGKGHE 
Sbjct: 404 SDNPRSEDPHAIIAEIIPGMDKVEKSRYAIIVDRREAIRHAIHLARTGDLVVIAGKGHEN 463

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             +V +   +   D  +  E+L
Sbjct: 464 YQLVKDQVLE-FDDRKVAAELL 484


>gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
 gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
          Length = 499

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 150/508 (29%), Positives = 237/508 (46%), Gaps = 37/508 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLF 59
           DL  K+   L+  L    +     KI  +  DSR I  G +F+ + G   DG     H F
Sbjct: 7   DLKLKELANLL--LVKETIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLEDRHQF 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  A+  GA A++V    +++          P ++V + R  +++ AS  YG       +
Sbjct: 63  VEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + L  
Sbjct: 114 IGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQM 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  LF  
Sbjct: 174 MKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFAR 233

Query: 237 LLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ 290
           L        +  A++ ADD   +   K        V++ G + G  +  K +       +
Sbjct: 234 LGNNLSTIDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNGADVQAKNITLSPKGIR 290

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +S      +    L G F VYNAL A  + +  GI    + + L  L  + GR E + 
Sbjct: 291 FLVSSFNGQIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIID 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N +   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   +
Sbjct: 351 EN-QDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYS 409

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++++A
Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHET  I+ +       D +  R+ +
Sbjct: 470 GKGHETYQILKDSTIH-FDDKEKARQAI 496


>gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
 gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
          Length = 486

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 174/509 (34%), Positives = 261/509 (51%), Gaps = 39/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       I  +   E+ I  ++ DSR I+   +FVAI G + DGH +I
Sbjct: 1   MKLNELLKNVKP-------IQIIGDTEKNIIGINIDSRKIEKDHLFVAIKGTQTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA AI+V       D    +  N   + V +T + +   A+  YG     +  +
Sbjct: 54  DKAIELGACAILVE------DIPEKLSENITYIQVKSTEEAVGKVATTFYGDPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKAL 174
            VTGT+GK++VA+ +  + ++ G     +G  ST+ ++  D       TTP PI L   L
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKFGHK---VGLLSTVCNYIDDKAVPASHTTPDPIELNILL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +  +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F
Sbjct: 165 AKMVEEGCEYAFMECSSHAIHQRRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKMFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++L  K++ AI  ADD      M    N    V +   + +    K      + + + + 
Sbjct: 225 DDL-GKDAFAITNADDKNG---MIMVQNCKATVKTYSTK-RAADFKAHLLECHFEGMYLE 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V GK+        G+F V N L   G  + +G     +L  L  L  V GR E + T+  
Sbjct: 280 VNGKEVGV--QFIGKFNVSNLLAVYGAAVMLGKKPEDILVALSALKNVNGRLEPI-TSLD 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           G    +DYAHT ++LE +L  I  +     G II V G GG+RD+GKRP+M   A+  +D
Sbjct: 337 GITAIIDYAHTPDALENVLLAIHEVLEGKGGHIITVCGAGGNRDKGKRPLMALEAVKKSD 396

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR+EDP+ I  +++ G+        +   NR EAIR A  M +K DV+++AG
Sbjct: 397 NVILTSDNPRNEDPQAIINDMLEGLDNTQKKKVLTIVNRKEAIRAACMMAHKGDVVLIAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHET   + NG K    D +++REI GL
Sbjct: 457 KGHETYQEI-NGVKHHFDDHEVVREIFGL 484


>gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
 gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
          Length = 495

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 186/482 (38%), Positives = 267/482 (55%), Gaps = 8/482 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L +     RE +I  ++ DSR ++ G++F A+ G +  G  FI  A+   A AI+  
Sbjct: 4   LAELGLTARGGREAQITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRMKAGAILTD 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++V  + R+ L+  AS  +G HP+ ++AVTGT+GK+SV++F +
Sbjct: 64  AKGAEIAADELAASDAAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGKTSVSTFCR 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +   L    +G T    ++    + TTP PI L + ++  +  G+THV++EASSHGL
Sbjct: 124 QIWEELDLPGVNLGTTGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVAMEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  F+N  +DH+DYH+T +AYF+AKM LF+ +L ++  A+I  DD   K
Sbjct: 184 DQRRLDGVILAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVINLDDPKGK 243

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           EV       G  V+ VG        L         Q +    +G+       L G FQ  
Sbjct: 244 EVAAICTARGQEVIGVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARLELIGGFQAE 303

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A+GL IA G D   V + L+ L  V GR E   T   G  ++VDYAHT +++E  L
Sbjct: 304 NVLLASGLVIAAGADPDEVFDTLQYLTTVRGRMELAATRQSGAAVFVDYAHTPDAVETAL 363

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GRIIV+ G GGDRD GKRP+MG  A   ADI IVTDDNPRSEDP  IRA ++
Sbjct: 364 RAMRPHVMGRIIVIVGAGGDRDAGKRPLMGAAAAQHADIVIVTDDNPRSEDPAAIRAAVM 423

Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G           E G+R EAI   I+ML   D L++AGKGHET  +V +       D +
Sbjct: 424 AGAVDAGGSDSITEVGDRAEAILRGIDMLGAGDALLIAGKGHETGQVVGDAVLP-FDDVE 482

Query: 488 II 489
             
Sbjct: 483 QA 484


>gi|99081858|ref|YP_614012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
 gi|99038138|gb|ABF64750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
          Length = 494

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/475 (37%), Positives = 261/475 (54%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      + +I  ++ DSR +  G++F A+ G +  G  F+ Q + QGA AI+  
Sbjct: 9   LSQLGLTARAGLDPQITGLAVDSREVGEGFVFAALPGTRVHGATFVEQVLDQGAVAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +     A   +   ++V ++ R+ LS  A+  +G  P  + AVTGT+GK+SV++F++
Sbjct: 69  AKGAEIAGEAIAAAGAALVVAEDPRQALSGAAALWFGAQPPVMAAVTGTNGKTSVSTFLR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 129 MIWTELGHKAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +L ++  A+I   D    
Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  +++VG     I L  +      Q +  +   + F     L G FQ  N
Sbjct: 249 EMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVAAGL IA G D   V + L  L  V GR +   T   G  ++VDYAHT +++   +K
Sbjct: 309 VLVAAGLAIASGEDPEQVFDTLPHLSTVRGRMQLAATRDNGATVFVDYAHTPDAVATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG  A D AD  IVTDDNPRSEDP  IRA ++ 
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGAAAQDNADAVIVTDDNPRSEDPAAIRAAVMG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +  G+R EAI   ++ML   D L++ GKGHE+   +   +     D +  
Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEAGDALLICGKGHESGQTIGT-DVLPFDDVEQA 482


>gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
          Length = 492

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 153/508 (30%), Positives = 250/508 (49%), Gaps = 35/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+    P       +        +I  +++DSR ++ G++FV + G   DGH F 
Sbjct: 1   MFLRDLLMPLLP-------VTVSGDDSMEITGLTADSRQVKPGYLFVCLTGYTVDGHTFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+  GA A++      +            I+ V +TR+ +++ A R++G   +   ++
Sbjct: 54  AQAVKNGAVAVLSEQDLDVP---------ATIVKVPDTRRAMAMLADRIFGSPTKEVKVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    + +I +     +  IG     I    ++ + TTP  I L ++   +
Sbjct: 105 GVTGTNGKTTTTHLIDKILRDQSKQTGLIGTIHMRIGDVTEEVKNTTPDAIDLQRSFRRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +  +E SSH L+  R+ G ++    FTNL +DH+DYH+T + Y  AK  LF +L
Sbjct: 165 CDVNTDYAIIEVSSHALELGRVRGCEIHTAVFTNLTQDHLDYHKTMENYRYAKSLLFSQL 224

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                      A++ ADD  S+     A     RV++ G  Q   +  K++         
Sbjct: 225 GNGYDTDRLKTAVLNADDEASEL---YATVTPARVITYGIDQPADVRAKQIEITSKGTSF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+            L G+F VYNAL A  + +A GI    +   LE++  V GRFE V  
Sbjct: 282 TVESFAGSARLNLRLMGKFNVYNALAAIAVTLAEGIPLEAIKASLEEVAGVNGRFEAVDA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDY+HT +SLE  L  ++    G +  + GCGGDRD+ KRPIM +IA   AD
Sbjct: 342 -GQPFAVLVDYSHTPDSLENALMTVKEFARGNVFCIVGCGGDRDRTKRPIMAQIATKYAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + ++T DNPRSE+P+ I  +++ G+       +    +R EAI  A+ +    DV+++AG
Sbjct: 401 LTVLTSDNPRSEEPQAILDDMLAGLSEVAPDRYTALTDRREAIAHAVSLAKPDDVILIAG 460

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHET  I+ +       D ++ RE + 
Sbjct: 461 KGHETYQIIKDQVLP-FDDREVAREAIA 487


>gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
 gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
          Length = 529

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/502 (31%), Positives = 242/502 (48%), Gaps = 18/502 (3%)

Query: 11  FPELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +L+NQ  I P          ++  + +DSR +QAG +F+ + G++ DG  F+ +A+ +
Sbjct: 16  LGQLLNQAGIQPQVVQGSLEGVQVRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALTR 75

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLSLFASRLYGKHPENILAVTGTS 124
           GA A +++     +        + PILV+  +   + L+  A+  YG  P   L + G +
Sbjct: 76  GAVAALIAQEAWEKVSGEAGGGSQPILVLPRSGINRALAQVAAAFYG-FPARQLTLVGVT 134

Query: 125 GKSSVA---SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ 180
           G +        ++ + Q +G  +  +G          +    T   P+ L ++L      
Sbjct: 135 GTNGKTTTTHLIEHLLQAAGRPTALLGTLYNRWPGHCEVAPHTTLFPLELQRSLRQAKEA 194

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G     +E SSH L Q R  G    A  +TNL +DH+D+H + + Y+ AK  LF +    
Sbjct: 195 GAEVAVMEVSSHALAQDRAWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLF-QPEYL 253

Query: 241 ESPAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  A++ ADD   + +++            L        +    V    N  Q T+    
Sbjct: 254 QGRAVVNADDEGGRRLLETIPASLEPWAYSLQPLEGIPALWPGDVQVHPNGLQATLHTPL 313

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PL G F + N L A G+ + +GI   L+   L     VPGR E V    +   
Sbjct: 314 GTLAVAAPLVGSFNLANLLAAVGVALHLGIPLELIQAALPHFPGVPGRMERVTLPGQDIT 373

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE +LK +R    GR+I VFGCGGDRD+GKRP MG+IA   AD  +VT 
Sbjct: 374 VIVDYAHTPDGLENLLKALRPQVQGRLICVFGCGGDRDRGKRPQMGRIAATWADRVVVTS 433

Query: 418 DNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPR+EDP++I  +I+ GIPG  +  + +R +AIR AI      D +V+AGKGHE   I+
Sbjct: 434 DNPRTEDPQQILQDILAGIPGSPWAVEVDRRQAIRLAILEAQPGDTVVIAGKGHEDYQIL 493

Query: 476 TNGEKKMSVDCDIIREILGLIL 497
              EK    D +  R  L L L
Sbjct: 494 GR-EKIHFDDREEARAALALRL 514


>gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
 gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
          Length = 520

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/506 (33%), Positives = 257/506 (50%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P  I+  +       + +I  V+ DSR I+ G +FVA+ G + DGH FI
Sbjct: 37  MKLSELLRNVKPIAIHGNA-------DVEIKGVNIDSRRIEDGHLFVAMRGTQVDGHRFI 89

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+AQGA A++      L+D  A +      + V +T +     A+  YG       ++
Sbjct: 90  GKAVAQGAVAVL------LEDMPAVMDEKVTYVQVASTEEDAGKVATVFYGNPSRRLKLV 143

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +  + ++ G  +  +      I         TTP PI L   LS +
Sbjct: 144 GVTGTNGKTTVATLLYNMFRKFGYKTGLLSTVCNYIDDKEVPADHTTPDPIELNCLLSRM 203

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G++   G FTNL RDH+DYH+T + Y NAK   F+ L
Sbjct: 204 VDAGCEYAFMECSSHAIHQRRISGLEFAGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGL 263

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + A+  ADD     +++    A  +  S+     F   +      + + + + +EG
Sbjct: 264 -PKNAFALTNADDKNGLFMVQNTKAA-VKTYSIKRMADF---RAKILECHFEGMYLEIEG 318

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+        G+F V N L   G  I +G     +L  +  L  V GR E + +   G  
Sbjct: 319 KEVGV--QFIGKFNVSNLLAVYGAAILLGRQPEEILVAMSTLKSVNGRLEPIQSPE-GFT 375

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++L  +L  I  +     G +I V G GG RD+GKRP+M + A+  +D  I
Sbjct: 376 AVVDYAHTPDALANVLAAIHDVLDTKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVI 435

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EAIRTA  M  K DV++VAGKGH
Sbjct: 436 LTSDNPRDEDPQAIIDDMLSGLDAAQRKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGH 495

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    + NG K    D ++IREI G+
Sbjct: 496 ENYQEI-NGVKHHFDDHEVIREIFGI 520


>gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
 gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
          Length = 485

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/509 (33%), Positives = 261/509 (51%), Gaps = 39/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P  I+  +       E +I  V+ DSR I  G +F+A+ G + DGH FI
Sbjct: 1   MKLSELLKNITPIAIHGNA-------EVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI QGA A++      L+D   T+  N   + V++T       A+  YG     +  +
Sbjct: 54  GKAIEQGAVAVL------LEDMPNTLNDNVTYVQVESTENTAGKVATLFYGDPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK+++A+ +  + +  G     +G  ST+ ++  D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYNMFREFGYK---VGLLSTVCNYIDDKAIPADHTTPDPIELNQLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + + + G  +  +E SSH + QHR+ G+      FTNL RDH+DYH+T + Y NAK   F
Sbjct: 165 ADMVAAGCEYAFMECSSHAIHQHRIGGLDFTGAIFTNLTRDHLDYHKTFENYRNAKKMFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L  K + AI  ADD     +M +   A  +  S      F   +      + + + + 
Sbjct: 225 DGL-SKHAFAITNADDKNG-MIMVQNTKATIKTYSTKRMADF---RAKILECHFEGMYLE 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++GK+        G+F V N L   G    +G  +  +L  L  L  V GR E + +   
Sbjct: 280 IDGKEVGV--QFIGKFNVSNLLAVYGAAKMLGKSTDEILLALSTLKSVNGRLEPIQSPE- 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           G    VDYAHT ++LE +L  I  +     G II V G GG RD+GKRP+M + A+  +D
Sbjct: 337 GFTAIVDYAHTPDALENVLTAIHDVLDNKGGHIITVCGAGGHRDKGKRPLMAQEAVKQSD 396

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR EDP+ I  +++ G+        +   +R EAIRTA  M  + DV++VAG
Sbjct: 397 TVILTSDNPRDEDPQAIINDMMAGLDATQRKKVLNIVDRKEAIRTAAMMAKRGDVILVAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHET   + NG K    D ++IREI G+
Sbjct: 457 KGHETYQEI-NGVKHHFDDHEVIREIFGI 484


>gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
 gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
          Length = 490

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/480 (33%), Positives = 235/480 (48%), Gaps = 23/480 (4%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            + +  I  +  DSR ++ G +FV + G   DGH F  +A+  GA AIV      +    
Sbjct: 18  DFHDPDITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAERELDV---- 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                + P+ +V N+++ LS+ +   YG+  + +  + +TGT+GK+S +  V +I +++G
Sbjct: 74  -----SVPVTIVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAG 128

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  IG     I       + TTP  + L K    ++   V    +E SSH L   R+ 
Sbjct: 129 KRTGLIGTMYIKIDEETFPVKNTTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGRVH 188

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKE 255
           G       FTNL +DH+DYH+T   Y  AK  LF +L       K   AI+ ADD  S  
Sbjct: 189 GCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEASAY 248

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             ++   A      +      +  K +          +            L G+F VYN 
Sbjct: 249 -YEKVTAAHISTYGIKNDADVM-AKHIKTTAQGTSFELVTNKGTKPITISLVGQFNVYNV 306

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A   CIA GI    V E +E+LH V GRFE V  N +   + VDYAHT +SLE +LK 
Sbjct: 307 LAAVATCIAAGIPFETVAEAVEELHGVRGRFELVNKN-QEFPVIVDYAHTPDSLENVLKT 365

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            + +T G++ VV GCGGDRD+ KRP M KIA+ LAD  I T DNPRSEDP  I  ++  G
Sbjct: 366 CKDMTEGKVFVVVGCGGDRDKTKRPKMAKIAVQLADEPIFTSDNPRSEDPLAILRDMEAG 425

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +    +    NR +AI  AI    K DV+++AGKGHET   +   E     D ++    +
Sbjct: 426 VENEYYHSIANREQAIFFAIANARKGDVVLIAGKGHETYQQIGA-ETFDFDDAEVAARAI 484


>gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 487

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 187/474 (39%), Positives = 264/474 (55%), Gaps = 2/474 (0%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           QL +   + R   I  ++ DSR +QAG++F A+ G+K  G  FI  A+   A AI+  + 
Sbjct: 3   QLGLTAAEGRNPAITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAILTDAV 62

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            +         S+  I+V D+ R  L+  ++  +G  P+ + AVTGT+GK+SV++FV+QI
Sbjct: 63  GAEIAADELANSDAAIIVTDDPRSALAFASALYFGAQPQIMTAVTGTNGKTSVSTFVRQI 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                L +  +G T    S       TTP PI L + L+ L  +G++H ++EASSHGLDQ
Sbjct: 123 WNLLDLEAVNLGTTGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHGLDQ 182

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RLDG+ L A  FTN  +DH+DYH T +AYF+AKM LF  +L  +  A++  DD    EV
Sbjct: 183 RRLDGVNLAAAGFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKGAEV 242

Query: 257 MKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              A   G  ++ VG      + L         Q +      + F     L G FQ  N 
Sbjct: 243 AMIAQAHGHELIGVGRDPEADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIGGFQAENV 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+AAGL IA G D A V + L  L  V GR +   T + G  ++VDYAHT +++E  LK 
Sbjct: 303 LLAAGLVIACGEDPARVFDTLGDLETVHGRMQLAATRTNGAAVFVDYAHTPDAVETALKA 362

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R    GR++ + G GGDRD+GKRP+MG+ A + AD+  VTDDNPRSEDP  IRA ++ G
Sbjct: 363 MRPHVMGRLVALIGAGGDRDRGKRPLMGQAATENADLVFVTDDNPRSEDPALIRAAVMGG 422

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            P  IE  +R EAI  A++ L   D L++AGKGHET   V +       DC+  
Sbjct: 423 APEAIEVADRAEAILRAVDALGPGDALLIAGKGHETGQTVGD-TVFPFDDCEQA 475


>gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
 gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
          Length = 484

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 257/505 (50%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       I      + +I  V+ DSR I+ G +F+A+ G + DGH FI
Sbjct: 1   MKLSELLRNISP-------IAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+ QGA A++      L++   T+  N   + V +T +     A+  YG     +  +
Sbjct: 54  GKAVEQGAAAVL------LENLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G  +  +      I+        TTP PI L   L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G  +  +E SSH + Q R+ G+  + G FTNL RDH+DYH+T + Y NAK   F+ L
Sbjct: 168 AAAGCEYAFMECSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + A+  ADD     +++    A  +  S+     F   +      + + + + ++G
Sbjct: 228 -PKNAFALTNADDKNGMFMVQN-TKASVKTYSIKRMADF---RAKILECHFEGMYLEIDG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+        G+F V N L   G  + +G     +L  +  L  V GR E + +   G  
Sbjct: 283 KEVGV--QFIGKFNVSNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSPE-GFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++L  +L  I  +     G +I V G GG RD+GKRP+M + A+  +D  I
Sbjct: 340 AVVDYAHTPDALANVLAAIHDVLDSKGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EAIRTA  M  K DV++VAGKGH
Sbjct: 400 LTSDNPRDEDPQAIIDDMLAGLDFTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    + NG K    D ++IREI G
Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFG 483


>gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 485

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/478 (33%), Positives = 240/478 (50%), Gaps = 25/478 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I  ++ DSR +Q G +FVA+ G + DGH +I +A+ +GA A+V  +   +Q       
Sbjct: 23  RNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAVEKGAVAVVCEAWPEVQ------A 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
                + V ++   +   A+  YG     +  + VTGT+GK+++A+ +  + +  G    
Sbjct: 77  EGVTYVQVKDSESAVGRLATVFYGDPTSKLQLIGVTGTNGKTTIATLLYNMFRVFGYKCG 136

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                   I   A     TTP PI L + L  ++ +G  +  +E SSH + QHR+ G+K 
Sbjct: 137 LCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHAVAQHRIAGLKF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FTNL RDH+DYH+T + Y +AK   F+ L PK + A+   DD      M    N  
Sbjct: 197 AGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGL-PKGAFAVTNVDDRNG---MIMVQNTK 252

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V +   +       KV      + + + V GK+     P  G F V N L      + 
Sbjct: 253 AVVKTYSLRAAADFKAKVLEESF-EGMCLDVNGKEVSV--PFIGRFNVSNLLAVYAAAVC 309

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSG 382
           +G  +  VL  L  L  V GRFE + +   G    VDYAHT ++L  +L  +  I    G
Sbjct: 310 MGRGAEDVLVALSTLRPVNGRFETIRSKE-GVTAIVDYAHTPDALVNVLSTVNEILKRRG 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-----IP 437
            +I V G GG+RD+GKRPIM + A+  +D  I+T DNPR E+P++I  +++ G     + 
Sbjct: 369 EVITVCGAGGNRDKGKRPIMAQEAVKNSDRVIITSDNPRFEEPQEIINDMLAGLDKEEMR 428

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
             I   +R EAIRTA  M    DV++VAGKGHE    V  G K    D ++I+E+ G+
Sbjct: 429 KVISIVDRKEAIRTACMMARPGDVVLVAGKGHEDYQEVK-GVKHHFDDHEVIKEVFGI 485


>gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
 gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
          Length = 511

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/500 (32%), Positives = 250/500 (50%), Gaps = 16/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+  + P +    S+      ER +  +S++S   Q G IF+ + G + DG  F 
Sbjct: 16  MKLHDLL-NNVPSI---SSLPNHPALERDVKGISTNSHSCQPGDIFIGMPGTRVDGGEFW 71

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  GA A ++S   + +        +  +++VD+     +  A+  Y    +  N++
Sbjct: 72  QSAMEVGATAAMISPQAAEKFPPT---DDHCVMIVDDLITVAAEVAAAFYHYPAQQLNMI 128

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    +    +  IG   T    F Q    TTP    L + L+  
Sbjct: 129 GVTGTNGKTTTTHLIEYFLSQCQKPTALIGTLYTRWPGFQQTAVHTTPFAPELQEQLAEA 188

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +  +E SSH L Q R+         FTNL +DH+D+H+  + YF AK  LF   
Sbjct: 189 VSANNEYCVMEVSSHALAQGRVKQCPFKVSVFTNLTQDHLDFHKDMEDYFAAKQLLFTPD 248

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +E  AII  DD Y K +++          SVG      + + +    N    T+    
Sbjct: 249 YLQEK-AIINLDDPYGKRLIESLKPEQVWSYSVGDTQADFYTRDLTYRGNGVTGTLHTPL 307

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
              +F  PL G+F + N L A    + +G+D   ++E L     VPGR E V  N  +  
Sbjct: 308 GTVNFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFLGVPGRMERVQINDKQDI 367

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE  LK  R    G++I VFGCGGDRD+ KRP+MG+ + +LAD+++VT
Sbjct: 368 TVIVDYAHTPDSLENSLKAARPFIQGQLICVFGCGGDRDRTKRPLMGQASAELADVSVVT 427

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I  +I+ GIP  +E     +R EAI+TAI      D +++AGKGHE   
Sbjct: 428 SDNPRTEDPQRILEDILTGIPETVEPFVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQ 487

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +   + L
Sbjct: 488 ILGT-EKIHFDDREEAGKAL 506


>gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580]
          Length = 488

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/506 (33%), Positives = 254/506 (50%), Gaps = 35/506 (6%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL  L+   K+ P    Q         +  I  +  DSR ++ G +FV I G   DGH 
Sbjct: 1   MKLTKLLTYLKNVPSYAGQ--------EDPDITSIEMDSREVKTGSLFVCIKGYTVDGHD 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
           +  QA  +GA AIV             + ++ P++++ +T++ L++ +   YG+  +   
Sbjct: 53  YARQAAEKGAAAIVAERE---------VDADVPVIIIRHTKRALAVLSDAFYGQPTKQLR 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ +TGT+GK+S +  V++I +++G  +  IG   T I     + + TTP  + L K   
Sbjct: 104 LIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFR 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  QGV    +E SSH L   R+ G      +FTNL +DH+DYH+T + Y +AK  LF 
Sbjct: 164 KMVDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFS 223

Query: 236 EL-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
           +L           A++ ADD  S      A      +L+ G Q    +  + +       
Sbjct: 224 QLGGSFNHETPKWAVLNADDPASAYF---AQVTSAHLLTYGIQNDADVMAENIKMAPKGT 280

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +           PL G F VYN L AA + IA  I  A + E +E L  V GRFE V
Sbjct: 281 TFDLVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELV 340

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT +SLE +L   R +T G++ VV GCGGDRD+ KRP M KIA+DL
Sbjct: 341 DA-GQDFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAVDL 399

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  + T DNPRSE+P  I  ++  G+ G  +    NR +AI  AI    K DV+++AGK
Sbjct: 400 ADEPVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET   +  G+     D ++ +  +
Sbjct: 460 GHETYQQI-GGQTFDFDDAEVAKRAI 484


>gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
 gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
          Length = 483

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/506 (33%), Positives = 258/506 (50%), Gaps = 38/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +++    P       I  +     +I  V+ DSR I+AG +FVAI G + DGH FI
Sbjct: 1   MKLNEVLKNITP-------IKIVGNDNVEITGVNIDSRRIKAGHLFVAIRGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA+A++        +    +  +   + V++T   +   A+  YG     +  +
Sbjct: 54  DKAIELGADAVLCE------ELPEKLSDHVTYVQVESTEDAVGKVATLFYGNPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK+++A+ +  + ++ G     +G  ST+ ++  D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYK---VGLLSTVCNYIDDVEVPADHTTPDPIELNELL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +   G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F
Sbjct: 165 AKMVEAGCEYAFMECSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L PK++ AI  ADD      M    N    V +   +       ++   H  + + + 
Sbjct: 225 DGL-PKDAFAITNADDKNG---MIMVQNTKATVKTYSIRSMADFRARILECHF-EGMYLE 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++G++        G+F V N L   G  I +G     +L  L  LH V GR E + +   
Sbjct: 280 IDGREVGV--QFIGKFNVSNLLAVYGAAIMLGKKPEDILLVLSTLHSVSGRLEPIHSPE- 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  +L  I  +    G +I V G GG+RD+GKRP+M + A+  +D 
Sbjct: 337 GFTAIVDYAHTPDALANVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDK 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR EDP++I  E++ G     +   I   +R EAIRTA  M  K DV++VAGK
Sbjct: 397 VIITSDNPRFEDPQEIINEMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    D +++ EI 
Sbjct: 457 GHENYQEIK-GVKHHFDDKEVLHEIF 481


>gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 496

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/503 (31%), Positives = 249/503 (49%), Gaps = 29/503 (5%)

Query: 8   YKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            K+  EL+  +    ++      I  V+ DSR  + G +F+ + G+K DGH +I QA A 
Sbjct: 2   AKNLQELVALMPGCEVRGDINLTITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAG 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++V    S++           ++ V +TR  +       +    + +  + VTGT+
Sbjct: 62  GAVAVLVEKEVSVE-------PGMTVIKVSDTRAAMQAITPFFFDYPSQKLRVIGVTGTN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    ++ I  ++G     IG   T I       + TTP  + L   L+ + + G+ 
Sbjct: 115 GKTTTTHLIRSILMQAGYKVGLIGTIHTLIGDRTLPVKNTTPDVVDLQGLLAEMVAAGMD 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELL 238
           +  +E SSH L  +R  G +   G FTN+ RDH+D+H T + Y +AK  LF      + +
Sbjct: 175 YAVMEVSSHALALNRTAGCEFDIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNV 234

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
                A+I  DD  +  +++       R ++ G Q G  +  + +    +  +       
Sbjct: 235 KTGKSAVINTDDPAAAHMLREVT---YRAITYGVQDGADLTARNINIQADGAKFEAVTTR 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + G F VYN L A G+ +A GI+  +V   LE    VPGRFE V    +   
Sbjct: 292 GIIPLALQITGLFNVYNVLAAIGVALAEGIEPDVVKTALEAFRSVPGRFEIVDA-GQPFT 350

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE ILK  R     RII VFGCGGDRD+ KRPIMG++A + AD+ + T 
Sbjct: 351 VIVDYAHTPDGLENILKTARQFAQRRIIAVFGCGGDRDRTKRPIMGRLAAEYADVVVATS 410

Query: 418 DNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DNPR+EDP  I  EI  GI         +    +R +AI  A+ +   QD++++AGKGHE
Sbjct: 411 DNPRTEDPVSILKEIEVGIREGLKPGKSYEVIVDRRQAIERALSLAEPQDIVIIAGKGHE 470

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+ +       D ++ REI+
Sbjct: 471 TYQILKDKTIP-FDDREVAREII 492


>gi|13471554|ref|NP_103120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
 gi|21362712|sp|Q98KA8|MURE_RHILO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14022296|dbj|BAB48906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
          Length = 484

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 228/494 (46%), Positives = 313/494 (63%), Gaps = 16/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL           L +      + ++  +SSDSR ++ G +F A+ G K DG  + 
Sbjct: 1   MKLRDL--------AGVLPVEGTASADLEVTGISSDSRQVKPGVVFFALAGTKADGAAYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA A+V   + S+           P+L VD+ R  L+L A+R +GK P  ++AV
Sbjct: 53  ADAARRGALAVVAGKSNSVAGLP------VPVLTVDDPRLALALSAARYFGKQPRTMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +++G ++  IG T  ++    +    TTP P+ L + L  L+ 
Sbjct: 107 TGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLRELAD 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVT+ S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  AK+RLF+ LLP
Sbjct: 167 AGVTYASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S   ++ A  AG  VL+VG  G F+ LK+V    ++Q+  +  EG  
Sbjct: 227 KGAPAVIFADDPWSAPTIQAAQAAGLNVLTVGRHGDFLTLKRVEHERHRQRAEVEAEGVL 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQ+ NALV+AGL I+ G   A  L  LEKL   PGR + VGT   G  +Y
Sbjct: 287 YEIDLPLAGDFQISNALVSAGLAISTGTPVAKALAALEKLKGAPGRLDLVGTTVSGAPVY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPDALENVLASVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRA I+   PG IE G+R +AI  A+ ML+  D L+VAGKGHE    + + E
Sbjct: 407 PRSEVPETIRAAILAAAPGAIEIGDRRKAIHEAVGMLHAGDTLIVAGKGHEEGQTIGS-E 465

Query: 480 KKMSVDCDIIREIL 493
                D + +R  L
Sbjct: 466 TLHFSDHEEVRAAL 479


>gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 484

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/502 (33%), Positives = 270/502 (53%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   + +  +
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG  +  I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ G++   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K         +V +   + +      ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGLKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E  + +F   +PGE+ +YN+L        + I    + E L  +  +PGR E V     
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVV-IPGRCELVAKEKN 340

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+  +    F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ + E     + +++ +IL
Sbjct: 461 YQILKD-ETIHFDEREVVYDIL 481


>gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
 gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
          Length = 484

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 170/502 (33%), Positives = 270/502 (53%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   + +  +
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG  +  I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K         +V +   + +      ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E  + +F   +PGE+ +YN+L        + I    + E L  +  +PGR E V     
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVV-IPGRCELVAKEKN 340

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+  +    F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ + E     + +++ +IL
Sbjct: 461 YQILKD-ETIHFDEREVVYDIL 481


>gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 484

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/502 (33%), Positives = 270/502 (53%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   + +  +
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG  +  I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ G++   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K         +V +   + +      ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E  + +F   +PGE+ +YN+L        + I    + E L  +  +PGR E V     
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVV-IPGRCELVAKEKN 340

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+  +    F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ + E     + +++ +IL
Sbjct: 461 YQILKD-ETIHFDEREVVYDIL 481


>gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 484

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/502 (34%), Positives = 272/502 (54%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   + +  +
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG  +  I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K         +V +   + +      ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E  + +F   +PGE+ +YN+L        + I    + E L  + V+PGR E V    +
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKK 340

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+  +    F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ + E     + +++ +IL
Sbjct: 461 YQILKD-ETIHFDEREVVYDIL 481


>gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 499

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/508 (29%), Positives = 239/508 (47%), Gaps = 37/508 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLF 59
           DL  K+   L+  L    +     KI  +  DSR I  G +F+ + G   DG     H F
Sbjct: 7   DLKLKELANLL--LVKETIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLKDRHQF 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  A+  GA A++V    +++          P ++V + R  +++ AS  YG       +
Sbjct: 63  VEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + L  
Sbjct: 114 IGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQM 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH+T   Y + K  LF  
Sbjct: 174 MKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFAR 233

Query: 237 LLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ 290
           L        +  A++ ADD   +   K        V++ G + G  +  K +       +
Sbjct: 234 LGNDLSTIDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNGADVQAKNITLSPKGIR 290

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E + 
Sbjct: 291 FLVSSFNGEIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIID 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N +   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   +
Sbjct: 351 EN-QDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYS 409

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++++A
Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHET  I+ +       D +  R+ +
Sbjct: 470 GKGHETYQILKDSTIH-FDDKEKARQAI 496


>gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 493

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/494 (31%), Positives = 242/494 (48%), Gaps = 22/494 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    P L+ QL +         I  V +DSR +  G +F+A  G   DG  FIP A+ +
Sbjct: 8   LPDWDPALLQQLGL--------PIKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEK 59

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++   A     F+       P L V N R+   + A+ + G    ++  + +TGT+
Sbjct: 60  GAAAVLWDEA---DGFAWKAEWQAPNLAVPNLRERAGIVAAHVLGLPSRDLTVVGITGTN 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S++ ++ Q     G  +  IG           +   TTP P+ + + L+    QG  
Sbjct: 117 GKTSISHWLAQAFSLLGQKAALIGTVGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAH 176

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SSHGLDQ R++G++     FTNL RDH+DYH + +AY  +K +LF         
Sbjct: 177 VVTMEVSSHGLDQFRVNGVEFATAVFTNLTRDHLDYHGSMEAYGESKKKLF--FWEGLKH 234

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I ADDA+ +++         RV++ G +   +    + A     Q+T++      D  
Sbjct: 235 AVINADDAFGRQLAAGIDPKQTRVVTYGLEQGDVRPLALAATLEGLQLTVATPWGTVDVR 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F   N L         G+        + ++    GR + VG  +    + +DYA
Sbjct: 295 TGLVGRFNAANLLACLATLCVNGVSLQDAAAVMARIQPARGRMQSVG-GAHEPLVVIDYA 353

Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++LE  L  +  I    GR+  VFGCGGDRD GKRP+MG IA   AD+A++T DNPR
Sbjct: 354 HTPDALEKALATLSEIRPAGGRLFCVFGCGGDRDPGKRPMMGAIAEKHADVAVLTSDNPR 413

Query: 422 SEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           SEDP+ I  +++ G+       + +R  AI  A+      DV++VAGKGHE    +  G 
Sbjct: 414 SEDPQAIIRDVLAGMDAARAHVEADREAAIHWAVAQARVGDVVLVAGKGHEEYQDIA-GV 472

Query: 480 KKMSVDCDIIREIL 493
           K+   D  +  E L
Sbjct: 473 KRPFSDFRVAEEAL 486


>gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
 gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
          Length = 488

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 169/506 (33%), Positives = 254/506 (50%), Gaps = 35/506 (6%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL  L+   K+ P    Q         +  I  +  DSR ++ G +FV I G   DGH 
Sbjct: 1   MKLTKLLTYLKNAPSYAGQ--------EDPDITSIEMDSREVKTGSLFVCIKGYTVDGHD 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
           +  QA  +GA AIV             + ++ P++++ +T++ L++ +   YG+  +   
Sbjct: 53  YARQAAEKGAAAIVAERE---------VDADVPVIIIRHTKRALAVLSDAFYGQPTKQLR 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ +TGT+GK+S +  V++I +++G  +  IG   T I     + + TTP  + L K   
Sbjct: 104 LIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFR 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  QGV    +E SSH L   R+ G      +FTNL +DH+DYH+T + Y +AK  LF 
Sbjct: 164 KMVDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFS 223

Query: 236 EL-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
           +L           A++ ADD  S      A      +L+ G Q    +  + +       
Sbjct: 224 QLGGSFNHETPKWAVLNADDPASAYF---AQVTSAHLLTYGIQNDADVMAENIKMAPKGT 280

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +           PL G F VYN L AA + IA  I  A + E +E L  V GRFE V
Sbjct: 281 TFDLVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELV 340

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT +SLE +L   R +T G++ VV GCGGDRD+ KRP M KIA+DL
Sbjct: 341 DA-GQDFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAVDL 399

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  + T DNPRSE+P  I  ++  G+ G  +    NR +AI  AI    K DV+++AGK
Sbjct: 400 ADEPVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET   +  G+     D ++ +  +
Sbjct: 460 GHETYQQI-GGQTFDFDDAEVAKRAI 484


>gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/516 (30%), Positives = 249/516 (48%), Gaps = 39/516 (7%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             +L+N+  + P+      + +I  +  DSR +  G +FV + G K DGH F  QAI +G
Sbjct: 97  LRKLLNEARVSPLSTEGDLDVEITGIQQDSRLVAPGDLFVCVKGLKSDGHQFAIQAIEKG 156

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A AI+     SL +           ++V++T   LS  A  +YG   + +  + +TGT+G
Sbjct: 157 AVAIISLMEVSLTEGLKAA------VIVEDTSVILSALAGVIYGHPSKKLSVVGITGTNG 210

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ +  +Q + +  GL    +G            +   TTP  + L   ++ +   G  
Sbjct: 211 KTTTSYLLQSLYEAMGLQVGLLGTIQYYIGGKNKLEADHTTPEALNLQNLMASMVQNGTE 270

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKES 242
              +E SSHGL   R + I+     FTNL RDH+D+H+T++ Y  AK  LF +++ P+  
Sbjct: 271 VCIMEVSSHGLVLGRCEDIEFDVAVFTNLTRDHMDFHKTEEEYRRAKGLLFAKMVDPERQ 330

Query: 243 PAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             ++  DD      + +   +       +G +   ++   V     + +V +     D +
Sbjct: 331 RKVVNIDDPNVSYFVSQGNQDVPVVTFGMGDKSADVYPLAVKLSLVESEVLVRTPQGDVE 390

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   VYN L A  + IA+G     ++  +E +  VPGR E +    +   + VD
Sbjct: 391 ISSRLLGRHNVYNILTAVAVGIAVGAPLEDIVRGIEAVDAVPGRCELID-EGQTFAVLVD 449

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT +++  +L  +R     RII V GCGGDRD+GKRPIM KIA D +D+ I+T DNPR
Sbjct: 450 YAHTPDAVARLLDTVRECGPKRIITVLGCGGDRDKGKRPIMAKIAADKSDVCIITSDNPR 509

Query: 422 SEDPEKIRAEIIHGIPGFIE-----KGN-----------------RIEAIRTAIEMLNKQ 459
           +E P  I  +++ G+   +E     + +                 R +AIR A+ M  + 
Sbjct: 510 TEKPLDIIDDMLAGVGWSMEQYCKWEEDSSYPLLPNGHRLFCQEIRSKAIRAAVAMAEEG 569

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           D +V+AGKGHET  I+    K    D +  RE L L
Sbjct: 570 DAVVIAGKGHETYQIIGE-IKGHFDDREECREALRL 604


>gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 486

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/496 (33%), Positives = 267/496 (53%), Gaps = 28/496 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+        +L+N + I   +  + +I  ++ DSR +  G +F AI G   DG+ FI
Sbjct: 1   MKLK--------KLLNHIGIS-YEGIDLEILSITDDSREVIPGSLFFAITGFSTDGNKFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+AI +GA A++  +A  ++ +S   +   P + V + R+  +L  S+ +G+  + +  +
Sbjct: 52  PEAIKKGAVAVISDNAEVVKLYSKKYK--VPFIYVKDIREKEALIVSKFFGEPSKKLKVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            VTGT+GK++ +  +  +  + G  +  IG     + + +     TTPS +   K L   
Sbjct: 110 GVTGTNGKTTTSYIIYNVLNKLGHKTAIIGTVEYGTPYKRKAASRTTPSSLEYNKLLREF 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q +  V  E SSHGL+ HR+ GIK     FTNL +DH+D+H+    YF +K +LF   
Sbjct: 170 LDQKIEFVVSEVSSHGLELHRVTGIKFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLF--- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +S ++I  DD + K +        C +++ G  GK + ++ V       ++T+ +E 
Sbjct: 227 FLTKSISVINIDDPFGKVLSGLRAIFPCELITYGKNGK-VKIENVENKKFGSEITLRLEN 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K +     L GE+  YN   A  L +++G  +  + +  E +  VPGR E V  N     
Sbjct: 286 KRYVIKTNLKGEYNAYNVAAAFSLLVSLGFKAEEIKDLFESIK-VPGRLEEVVEN----- 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +++DYAHT ++LE +L  +  I  G++I VFGCGGDRD+ KRP MGK+A   +D  I+T+
Sbjct: 340 VFIDYAHTPDALEKVLTVLSQIKKGKLITVFGCGGDRDREKRPFMGKVAEKFSDRVIITN 399

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE+P KI  +I+ GI      I   NR EAI  A+E     D++++AGKGHE   I
Sbjct: 400 DNPRSEEPSKIIEDILSGIENREKVIVIPNRKEAIFKALEEKRGNDIVLIAGKGHENYQI 459

Query: 475 VTNGEKKMSVDCDIIR 490
           + N +K    D +++ 
Sbjct: 460 IGN-KKIHFSDREVVE 474


>gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
 gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
          Length = 494

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 254/505 (50%), Gaps = 29/505 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    ++     +I +V++DSR ++ G +F+A+ G   DGH ++ +A+  G
Sbjct: 2   KHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS           I S+  ++ V++TR  +       +        ++ VTGT+G
Sbjct: 62  AVAVLVSKPIE-------ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG     I   +     TTP  + L   L  +  +GVTH
Sbjct: 115 KTTTTHMIRHILRAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LP 239
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++     + 
Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
               A+I  DDAY + V+++       +++    G   ++   V       + T+S +G 
Sbjct: 235 SGKGAVINIDDAYGQRVVEKTTAP---IITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGH 291

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D+       G F VYN L A G C+  GI    + + L+    VPGRFE +    +   +
Sbjct: 292 DYTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAV 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  VT D
Sbjct: 351 VVDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSD 410

Query: 419 NPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE 
Sbjct: 411 NPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ +       D +  R  L  I
Sbjct: 471 YQILKDKTIH-FDDREEARAALKEI 494


>gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1005

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/503 (32%), Positives = 250/503 (49%), Gaps = 22/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            LQ++  ++  + I+ L +         I+ V+SDSR +  G +FVAI G   DG  FI 
Sbjct: 9   NLQEVQLEELLKEISSLELLGKAGFGGAISMVTSDSREVLPGSLFVAIKGYATDGGRFIR 68

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--A 119
            A+ +GA A++        +F +        + V + RK L+  A   YGK  + +L   
Sbjct: 69  SAVERGAAAVICE------EFPSDPALPCLYIKVADARKALAEAARIFYGKASDQLLIIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ A  +  +   +G+S+  IG     I         TTP    L      + 
Sbjct: 123 VTGTNGKTTTAKLITAMLNANGISAGYIGTNMCRIGELEIPLDRTTPEAHGLHALFRQML 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G     +E SSH L   R+ GI+  A  FTNL ++H+D+H+T   Y  AK +LF++L 
Sbjct: 183 EAGCKAAVMEVSSHALVLQRVYGIRFHAALFTNLTQEHLDFHETMHDYAEAKQQLFDQLS 242

Query: 239 PKESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQV 291
           P +  A++  DD Y++++  R  +    C  +  G Q      +      +        +
Sbjct: 243 P-DGFAVLNIDDPYAEQMAARVADDKIYCCTMQRGLQPALSCSRLFAADLLQGTLASSTI 301

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +  +    LPG F V N L AA +   + + +  +   L  +  V GR E VG 
Sbjct: 302 VLHFPDESVEMQVKLPGNFNVMNVLEAAAIGTGMALSAKEICNALSAVSTVEGRMERVGE 361

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL 409
           + +G   +VDYAHT ++L   L  +  +     R+IVVFGCGG+RD+ KR  MG+IA ++
Sbjct: 362 SRQGWMAFVDYAHTPDALFKALDALHGLKEDASRLIVVFGCGGNRDKEKRSEMGRIASEI 421

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  I+T DNPR EDPE+I   I  GI G  ++   +R EAIR A+ ML   D+L+VAGK
Sbjct: 422 ADEVIITSDNPRDEDPEEILDAIERGITGVHYLRISDRAEAIRRAVLMLKAGDLLLVAGK 481

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE    +  G K    D  II+
Sbjct: 482 GHEKYQEIA-GHKYFFSDQAIIK 503



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 157/455 (34%), Gaps = 37/455 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +F+A+ G   DGH FI     +GA   +VS  +  +  S         
Sbjct: 563 VVIDSREVRGGELFIALKGENADGHCFIGTVFEKGASWAMVSRQWYEEQGSVDPPPGKGF 622

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V D+T   L   A+    +    +LA+ G++GK++    V  +                
Sbjct: 623 IVTDDTVAGLQQLATIYRHQFSIPVLAIGGSNGKTTTKEMVASVLGT------------- 669

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
                  +     + + +   L  L       V     +H  +   L  I        TN
Sbjct: 670 -GFRVHMSEGNRNNHLGVPLTLLQLRGDTDIAVVEMGINHPGEMVLLAAIGSPTHALLTN 728

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G +H+++         A++ LF+ L      A +  DD      +  A +     +  G
Sbjct: 729 IGHEHLEFLVDLDGVEAAEIPLFDYLRQSGGIAFVNMDDPR----ISAAASGMAGSVPYG 784

Query: 272 YQGKFIHLKKVCAIHNKQ----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              +  H      I           +              G+  V NA+ AA +    G+
Sbjct: 785 MATRSEHSCWARDISVNSAGALSFLLCSIAGSEPVTLNFTGKHNVMNAIAAATVGHYFGL 844

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRII 385
               + E LE+L   PG       ++ G RI  D Y   S+S+   +  +  +   G+ +
Sbjct: 845 SLCQIREGLERLTPAPGWKRLEVLDACGVRILNDTYNANSDSMRKAIDALCDLPGAGKRV 904

Query: 386 VVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            V G   +     + +   +G      +   + T      E        +     G  E 
Sbjct: 905 AVLGDMLELGLAGEVEHQAIGNYLQQSSVDLLFT----FGESARLFGRAVPERYRGHFES 960

Query: 443 GNRIEAIRTAIEM-LNKQDVLVVAG-KGHETVHIV 475
               EA+  A+   L + D+++  G +G +   +V
Sbjct: 961 ---REALLEALRTVLQEGDIVLFKGSRGMKLEQVV 992


>gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 486

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/497 (33%), Positives = 256/497 (51%), Gaps = 26/497 (5%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+N++ +  +     R+I E+  DSR +    ++VA+ G   DGH FI  AI +GA 
Sbjct: 3   ITELVNRIPVLEIHGDNSREITELVIDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKGAA 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V        +   T+  N   ++V ++ K L   AS  YG   + +  + VTGT+GK+
Sbjct: 63  AVVCE------ELPETLAENVTYILVKDSSKALGYLASNYYGNPSQKLKLIGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV++ +  + +  G  +  +      I         TTP  I + + L+    +G     
Sbjct: 117 SVSTLLFDVFKNLGYPAALLSTVEIRIGEEIIPATHTTPDVITINRILAEAVEKGCEFAF 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHG+ Q+R++G+      FTNL  DH+DYH+T + Y   K R F+EL    + AI 
Sbjct: 177 MEVSSHGIAQNRIEGLHFKIAGFTNLTHDHLDYHKTFEEYLKTKKRFFDEL-EDTAIAIT 235

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD     ++    N   +  S   +    +  K+  +     + ++  GK+F     L
Sbjct: 236 NVDDKNGNVML---QNTKAKKKSYALKTMADYHGKLLEVDFNGML-LNFNGKEFW--TTL 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F VYN L+  G+   +G +   +L+ + KL  V GRFE   ++  G    VDYAHT 
Sbjct: 290 TGKFNVYNLLLVFGIAAELGFEQDEILQAISKLKRVSGRFETFKSDG-GIFFIVDYAHTP 348

Query: 367 NSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           ++LE IL +I  I +    +I VFGCGGDRD  KRP MG IA   + +AI+T DNPR+ED
Sbjct: 349 DALENILDSINDIRTKNERLITVFGCGGDRDHSKRPEMGNIATKKSTLAIITSDNPRTED 408

Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P +I  EI  G+       +    +R EAI+ AI+    +D+++VAGKGHET   + NG 
Sbjct: 409 PTQIIKEIEAGVEPQNFSKYTSIPDRKEAIKMAIKFAEPKDIVLVAGKGHETYQEI-NGV 467

Query: 480 KKMSVDCDIIREILGLI 496
           K    D ++I E+  L+
Sbjct: 468 KHHFDDKEVINELWKLM 484


>gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 492

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 146/510 (28%), Positives = 235/510 (46%), Gaps = 38/510 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---EDGH 57
           MKL++L      +         +     KI  +  DSR I  G +F+ + G     ED H
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEIDSRKITNGNLFICVSGINGFLEDRH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--E 115
            F+  A+  GA A++V    +++          P ++V + R  +++ AS  Y       
Sbjct: 54  QFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYDYPSNKM 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
            ++ +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + L
Sbjct: 105 KLIGITGTNGKTTTSYLLEKIFSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + ++   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  LF
Sbjct: 165 QMMKNRNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLF 224

Query: 235 EELLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNK 288
             L        +  A++ ADD   +   K        V++ G + G  +  K +      
Sbjct: 225 ARLGNDLSTTEKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNGADVQAKNITLSPKG 281

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +S    + +    L G F VYNAL A  + +  GI    + +    L  + GR E 
Sbjct: 282 IHFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSFSNLKSIEGRMEI 341

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +  N +   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA  
Sbjct: 342 IDEN-QDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 400

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+++
Sbjct: 401 YSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 460

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+ +       D +  R+ +
Sbjct: 461 IAGKGHETYQILKDSTIH-FDDKEKARQAI 489


>gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
 gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
          Length = 495

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/511 (29%), Positives = 246/511 (48%), Gaps = 39/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQ L       L+    +      +     + +DSR +Q G +F+ + G   DGH + 
Sbjct: 1   MQLQQLAS-----LLAVSRVMGDGTVDC--RGIGADSRRVQPGDLFLCLPGFTVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+A GA A+VV     +           P LVV + R  +++ A  ++      +  +
Sbjct: 54  GQAVASGAAALVVERELDVP---------VPQLVVKDARHAMAVLADYMFDSPSRRMRMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++   +++I Q +G+++  IG      +        TTP  + L + L  +
Sbjct: 105 GITGTNGKTTITYLIEKIMQDAGVNTGLIGTIQMRYNGQSYPMSGTTPEAVELQRYLGNM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + QGV    +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK  LF  L
Sbjct: 165 AEQGVQCCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRL 224

Query: 238 LP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
                        A++ ADD  S  +  +      +V++ G +    +   ++       
Sbjct: 225 GNAFSRDASNSKYAVLNADDPASSYLQAQTA---AQVITYGVEKDSDVQASRITISAKGT 281

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +S    + D    + G+F VYNAL A    +  GI    +   LE +  V GR E V
Sbjct: 282 SFHVSTFKGETDIELRMVGKFNVYNALAAISAALLEGISLVDIKRSLESIAGVDGRVEPV 341

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT + LE +L+ ++   +G++  VFGCGGDRD+ KRP+MGKIA   
Sbjct: 342 DA-GQPFAVIVDYAHTPDGLENVLRTVKEFATGKVWCVFGCGGDRDRTKRPLMGKIAARY 400

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +D + +T DNPR+EDP  I  +I  G+         +    +R  AI  A+EM +  DV+
Sbjct: 401 SDHSFITSDNPRTEDPIVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVV 460

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHET  ++         D  + +E +
Sbjct: 461 LIAGKGHETYQLIGK-TVHEFDDRIVAKEAI 490


>gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 504

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 169/505 (33%), Positives = 256/505 (50%), Gaps = 30/505 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L+  + I       +  +  ++ DSR IQAG +FVA+ G + DG+ FIP+A+  GA 
Sbjct: 5   LNNLLRDVEILQTAGPLDVPVTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPEAVRSGAS 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A++  +    +  +        ++ V ++RK ++  A+  YG       ++ VTGT+GK+
Sbjct: 65  AVITETVGFSECPA-------TVVRVSDSRKAMARMAANYYGHPCAGLKMIGVTGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +R G S   +G       + ++   +TTP  + L      +   GVTHV 
Sbjct: 118 TTTLLLESILKRGGHSVGVLGTLFYRWGAKSKTAGMTTPESLDLQGLFYEMREDGVTHVV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q R+      A  FTNL +DH+DYH T + YF AK  LF E L   S A+I
Sbjct: 178 MEVSSHALAQGRVAECAFDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLRTGSVAVI 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y   ++++A   G    S G +    H+K      +  +  +       D   PL
Sbjct: 238 NGDDPYGARLVEKA-GPGAWSYSTGSEAARAHVKSARLTASGIEARLCGPDGSMDIHSPL 296

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   +YN L A    +A+G+  A + E +  L  V GR + V +   G  + VDYAHT 
Sbjct: 297 IGRLNLYNILAAVTASLAMGVPEAAIREGVAGLTSVDGRLQRVASPGTGFEVVVDYAHTP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E  L  +R +T+GR++VVFGCGGDRD+GKRP+MGK+A  L D+ IVT DNPRSE PE
Sbjct: 357 DAMEKSLGCLREMTAGRLLVVFGCGGDRDRGKRPLMGKVAGALGDLVIVTSDNPRSEVPE 416

Query: 427 KIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +I  EI  G+                  G+I + +R  AI  A+      D + + GKGH
Sbjct: 417 RIIDEIEPGVRASGLERILAAEPGNGARGYIVEVDRKSAIEKALAWARPGDTVFIGGKGH 476

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           ET  +V  GE     D  ++ + L 
Sbjct: 477 ETYQLV-GGEVLPFDDRLVVAQYLA 500


>gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
 gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
          Length = 483

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/504 (31%), Positives = 250/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+    P  I       +   + +I  V+ DSR I  G +F+A+ G + DGH FI
Sbjct: 1   MKLKELLKGIHPTTI-------IGEEDIEIAAVNIDSRRIGKGHLFIAMRGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+AI QGA AI+  +           ++    +VV +T       A+  YG       ++
Sbjct: 54  PKAIEQGASAILCET------IPEQQKAGVTYIVVSSTEDAAGKVATIFYGNPSMRLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +  + ++ G     +      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKFGYKCGLLSTVCNYIEEEAVPADHTTPDPIALNQLLHRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +V +E SSH + Q R+ G+    G FTNL RDH+DYH+T   Y NAK   F+ L
Sbjct: 168 AESGCEYVFMECSSHAIAQKRISGLHFSGGIFTNLTRDHLDYHKTFDNYRNAKKAFFDSL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK S AI  ADD     ++    N    + +   +       K+   H  + + + ++G
Sbjct: 228 -PKSSFAITNADDKNGMYMV---QNCKATIKTYSLRNMADFKAKILECHF-EGMYLEIDG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++        G+F V N L   G  + +G     +L  +  L  V GR E +  +  G  
Sbjct: 283 REVGV--QFIGKFNVSNLLAVYGTAMMLGKQPEDILLAMSTLKSVSGRLEPI-RSQEGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRP+M + A   +D  I+
Sbjct: 340 AVVDYAHTPDALANVLNAIHEVLDGKGKVITVCGAGGNRDKGKRPLMAQEAAKQSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR EDP+ I  +++ G+        +   +R EAIRTA+ M  + DV+++AGKGHE
Sbjct: 400 TSDNPRDEDPQSIIDDMLAGLNMQQRKKTLSIVDRKEAIRTAVMMAERGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T   +  G K    D + +  +  
Sbjct: 460 TYQEIK-GVKHHFDDKETVSALFN 482


>gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
 gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
          Length = 483

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 167/506 (33%), Positives = 259/506 (51%), Gaps = 38/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       I  +   + +I  V+ DSR I+AG +FVA+ G + DGH FI
Sbjct: 1   MKLNELLKNITP-------IKIIGNDDVEITGVNIDSRRIKAGHLFVAMKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA +++        D    ++     + V++T   +   A+  YG     +  +
Sbjct: 54  GKAIELGAISVLCE------DLPEVLQEGITYVQVESTEDAVGKVATLFYGNPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK+++A+ +  + ++ G     +G  ST+ ++  D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHK---VGLLSTVCNYIDDVEVPADHTTPDPIELNELL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +   G  +  +E SSH + Q R+ G+K     FTNL RDH+DYH+T + Y NAK   F
Sbjct: 165 AKMVEAGCEYAFMECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKKAFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L PK++ AI  ADD     +M +   A  +  S+     F   +      + + + + 
Sbjct: 225 DGL-PKDAFAITNADDKNG-MIMVQNTKATVKTYSIRTLADF---RARILECHFEGMYLE 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++G++        G+F V N L   G  I +G     VL  L  LH V GR E + +   
Sbjct: 280 IDGREVGV--QFIGKFNVSNLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIHSPE- 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  +L  I  +    G +I V G GG+RD+GKRP+M + A+  +D 
Sbjct: 337 GFTAIVDYAHTPDALANVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDK 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  M  K DV++VAGK
Sbjct: 397 VIITSDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET   +  G K    D +++ EI 
Sbjct: 457 GHETYQEIK-GVKHHFDDKEVLHEIF 481


>gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
 gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
          Length = 494

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/505 (31%), Positives = 253/505 (50%), Gaps = 29/505 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    ++     ++ ++++DSR ++AG +F+A+ G   DGH ++ +A+  G
Sbjct: 2   KQLQDIVKTLQTPHIEGNTAVEVLDITADSRAVKAGSLFIALDGATVDGHNYVNKAVEAG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS           +  +  ++ V++TRK +       +        ++ VTGT+G
Sbjct: 62  AVAVLVSKPVE-------VSGDVCVITVEDTRKAMMACVPYFFDYPANSMRMIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG     I   +     TTP  + L   L  +  +GVTH
Sbjct: 115 KTTTTHMIRHILKGQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LP 239
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++       
Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
               AII  DD Y   V+++       +++    GK  ++   V       + T+S +G 
Sbjct: 235 SGKGAIINIDDEYGHRVIEKTTAP---IITYSIDGKGTLNAHDVEMTPKSSRYTVSYDGN 291

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D+       G F VYN L A G C+  GI    + + ++    VPGRFE +    +   +
Sbjct: 292 DYTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKAMKTFSAVPGRFELI-EEGQPFAV 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    DI  VT D
Sbjct: 351 VVDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDIVYVTSD 410

Query: 419 NPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE 
Sbjct: 411 NPRTEDPVQIVKDVEVGVKEGLREGSHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ +       D +  R  L  I
Sbjct: 471 YQILKDKTIH-FDDREEARAALKEI 494


>gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
 gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
          Length = 484

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/502 (34%), Positives = 270/502 (53%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   + +  +
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG  +  I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K         +V +   + +      ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E  + DF   +PGE+ VYN+L        + I    + E L  +  +PGR E V     
Sbjct: 283 LEEVE-DFSINIPGEYNVYNSLGCIICAYNLNIPMNKIKEGLSDVV-IPGRCELVAKEKN 340

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTRNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+  +    F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ + E     + +++ +IL
Sbjct: 461 YQILKD-ETIHFDEREVVYDIL 481


>gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
 gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
          Length = 503

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 183/482 (37%), Positives = 266/482 (55%), Gaps = 8/482 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +     R+  I  +S DSR ++ G +F A+ G K  G   I  A+  GA AI+  
Sbjct: 12  LAALGLRAKGGRDATITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILTD 71

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  +++ ++ R  L+L AS  +G HPE ++AVTGT+GK+SV++F +
Sbjct: 72  AQGAQIAAKELADSSAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFAR 131

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI     L++  +G T    ++    + TTP PI L + L+   S G+THV++EASSHGL
Sbjct: 132 QIWIEMELAAVNLGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHGL 191

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T +AYF+AKM LF  LLP++  A+I  DD+   
Sbjct: 192 DQRRLDGVVLAAAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKGP 251

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           EV++ A + G   ++VG        L         Q++    +         L G FQ  
Sbjct: 252 EVVQIAESRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQAD 311

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AA L IA G D     + L  L  V GR +   T   GG ++VDYAHT +++   L
Sbjct: 312 NVLLAAALVIAAGGDPEEAFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATAL 371

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R    G++I + G GGDRD GKRP+MG+ A+  AD+  VTDDNPRSEDP  IRA ++
Sbjct: 372 MAMRPHVMGKLIAIVGAGGDRDTGKRPLMGQAAVQNADMVFVTDDNPRSEDPRVIRAAVM 431

Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G          IE G+R EAI   I+ L   D L++AGKGHE+  I+ + +     D +
Sbjct: 432 AGALENAAGKSVIEVGDRAEAILRGIDALGPGDALLIAGKGHESGQIIGD-DVLPFDDVE 490

Query: 488 II 489
             
Sbjct: 491 QA 492


>gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 463

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 25/473 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +DSR ++ G +F+ I G   DGH +   A+  GA A++     SL         N P
Sbjct: 2   SLENDSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAERELSL---------NVP 52

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +++V +T + +++ A   YG+  + +  + +TGT+GK++ +  +++I   +G S+  IG 
Sbjct: 53  VIIVKDTARAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGT 112

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T ++    + + TTP  + L K  + +  + V    +E SSH LD+ R+ G       
Sbjct: 113 MYTKVAGETLETKNTTPESLTLQKTFASMVEKKVEAAVMEVSSHALDEGRVHGCDFNVAV 172

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAHNA 263
           FTNL +DH+DYH+T   Y  AK  LF +L       K   A++ ADD  S E  K   + 
Sbjct: 173 FTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRK---ST 229

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             ++L+        +    +          +            L G+F VYN L A G  
Sbjct: 230 AAQILTYAIDNEADLRAVHIQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNVLAAIGAA 289

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G++   +LE +  +  VPGRFE V    +   + VDYAHT +SLE  L+ ++    G
Sbjct: 290 LASGLELEAILESISTVKGVPGRFETVDA-GQDFSVIVDYAHTPDSLENALETVKEFAEG 348

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFI 440
           RI VV GCGGDRD+ KRP+M KIA  LA  A+ T DNPRSEDPE+I  ++  G+P   + 
Sbjct: 349 RIFVVVGCGGDRDRTKRPLMAKIACGLATDAVFTSDNPRSEDPEEILKDMAAGVPEGNYT 408

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R EAI  ++    K DV+++AGKGHET   +  G+     D    RE +
Sbjct: 409 MIADRKEAIAYSVGAAGKGDVILIAGKGHETYQQI-GGQTFDFDDRTAAREAI 460


>gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 481

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 144/474 (30%), Positives = 242/474 (51%), Gaps = 17/474 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++ ++  +++D+R ++ G +FV I G   DGH F   A   GA AIV    Y L++ +  
Sbjct: 11  QDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCE--YELENIA-- 66

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
                P ++V +T   L   A  ++ K  E +    +TGT+GK++ A  ++ +       
Sbjct: 67  ----IPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYILEHLLTGFEGH 122

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG      ++   + + TTP P+ L +    +  +GV  V++E SSH L+ HR+D  
Sbjct: 123 VGYIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVAIEVSSHALELHRVDYC 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +     FTNL  +H+D+H T   YF AK +LFE L P +   I+  DD Y ++++ R   
Sbjct: 183 QFKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTP-DGHGIVNLDDEYGEKLVNRLKE 241

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +   V + G +       + +          ++     ++   PL G F VYNAL A   
Sbjct: 242 SQTAVYTYGIESDADFKAEDIHMTSFGTSFKLTCPEGIYEVQTPLLGRFNVYNALGAMAS 301

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             +  +    ++  ++ L  V GR E +    +   + VDYAHT + +E +L+ +  I  
Sbjct: 302 AYSASMPMEQIIALIKTLSPVDGRMEIIN-EGQDFTVIVDYAHTPDGVEKVLEFVTGIKQ 360

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GF 439
             + VV GC GDRD+ KRP++ K+++D AD  I T D+P SEDP  I  E++ GI    +
Sbjct: 361 NGVKVVIGCPGDRDRTKRPVIAKLSVDYADDVIFTTDDPHSEDPVDILNEMVSGIKPMNY 420

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +RIEAI TAI    K D++++AG+GHE +    +G  ++  D ++ +E+L
Sbjct: 421 EVIVDRIEAIETAINKAQKNDIVLIAGRGHEQIQYWKSGNIRL-DDREVAKEVL 473


>gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 487

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/496 (31%), Positives = 250/496 (50%), Gaps = 26/496 (5%)

Query: 10  DFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           D  EL+  L  F  +  +   I  +  DSR ++ G +F+ I G   DGH F   A+ +GA
Sbjct: 2   DLRELLTHLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            AI+      ++     ++S         T++ +++ A   Y +  +   ++ VTGT+GK
Sbjct: 62  VAILAEKPVDVEVPVVRVKS---------TKRAMAVLADAFYNQPTQKMHLIGVTGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ I +     +  IG     I   + D + TTP  + L K    +  + V   
Sbjct: 113 TTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVA 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPK 240
            +E SSH LD  R+ G       F+NL +DH+DYH T + Y  AK  LF +L       +
Sbjct: 173 MMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNR 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
              A++ ADDA ++E +K   N    V++ G      I    +   ++     ++   + 
Sbjct: 233 PKFAVLNADDAATEEYIK---NTAATVITYGIDRDSDIRATNIQITNSGTTFDLTTPTET 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G+F VYN L A   C+  GI  ++++E ++ L  V GRFE V    +   + 
Sbjct: 290 VRVEMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEVVDAE-QDFTVI 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT +SLE +LK ++      I V+ GCGGDRD+ KRPIM +IA + +  AI+T DN
Sbjct: 349 VDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAEYSTQAILTSDN 408

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PRSEDP  I  ++  G+    ++   +R EAIR A+E  +  DV+V+AGKGHET  I+  
Sbjct: 409 PRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVEAAHADDVVVIAGKGHETYQIIGK 468

Query: 478 GEKKMSVDCDIIREIL 493
                  D ++ R+++
Sbjct: 469 KVFD-FDDREVARKMI 483


>gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 494

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 250/505 (49%), Gaps = 29/505 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    +      +I ++++DSR ++AG +F+A+ G   DGH ++ +AI  G
Sbjct: 2   KQLQDIVKTLQAPQVTGNTAVEILDITADSRAVKAGSLFIALDGATVDGHNYVNKAIEAG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS           +  +  ++ V++TR  +       +        ++ VTGT+G
Sbjct: 62  AVAVLVSKPVE-------VSGDICVITVEDTRTAMMACVPYFFDYPANSMRMIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG     I         TTP  + L   L  +  +GVTH
Sbjct: 115 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDATYPIHNTTPDVVDLQHILHQMVEEGVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LP 239
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++       
Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
               AII  DDAY   V+++       +++    G   ++   V       + T+S +G 
Sbjct: 235 SGKGAIINIDDAYGHRVVEKTKAP---IITYSIDGNGTLNAHDVDMTPKSSRYTVSYDGH 291

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D+       G F VYN L A G C+  GI    + + L+    VPGRFE +    +   +
Sbjct: 292 DYTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAV 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  VT D
Sbjct: 351 VVDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSD 410

Query: 419 NPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE 
Sbjct: 411 NPRTEDPVQIVKDVEAGVKEGLREGSYYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ +       D +  R  L  I
Sbjct: 471 YQILKDKTIH-FDDREEARAALKEI 494


>gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
 gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
          Length = 489

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/500 (31%), Positives = 243/500 (48%), Gaps = 28/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+ +          +      +  I  +S+DSR +Q G +F+ + G + DG  F 
Sbjct: 4   MRLHELLART--------GLDTRNLPDIDIAGLSTDSRQVQPGDLFIGLPGTRVDGSEFW 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQAIA GA  +V+S      + +  + +  P++ V +     +  AS  Y   P   L +
Sbjct: 56  PQAIAGGAAGLVIS------ENARGVEAAVPVIRVPDVVGTCARLASAYY-DFPARKLTL 108

Query: 121 TGTSGKSSVA---SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            G +G +        ++ + Q    +       S     +Q+ R TTP  + + K L+ +
Sbjct: 109 AGVTGTNGKTTTTHLIENLLQAQAPTGLVGTLYSRWPGQSQEARHTTPFALEIQKLLAQM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH L Q R+ G +  A  FTNL +DH+D+H   ++YF AK  LF   
Sbjct: 169 VEAGCQYGVMEVSSHALAQQRVAGCRFEAAVFTNLTQDHLDFHPDMESYFQAKATLFSP- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
             +   A+I ADD +   +      A  +V +  +Q G  I+ +         + T+   
Sbjct: 228 EYRSGRAVINADDPWGVRLAA----AYDQVWTYSFQPGADIYPEDAVFTPEGIRGTLVTP 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                F  PL G+F + N L A G  +A+GID   +   L     VPGR E V  +    
Sbjct: 284 VGRAAFTSPLVGQFNLANLLAAVGATLALGIDLEAIAAGLSGFGGVPGRMERVSGSDDDI 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + L  +L+  R    GR+I VFGCGGDRD+ KRP MG+IA +L+D+ +VT
Sbjct: 344 AVIVDYAHTPDGLRKLLEATRPFVRGRLICVFGCGGDRDRTKRPQMGRIAAELSDLPVVT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E+PE I  +I+ GIP       + +R  AI  A+      D +V+AGKGHE   
Sbjct: 404 SDNPRTENPEAILDDILAGIPVGVSPTVEVDRRRAILQALLEAKAGDCVVIAGKGHEDYQ 463

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+    K    D +  RE L
Sbjct: 464 ILGT-TKIHFDDREQAREAL 482


>gi|257058188|ref|YP_003136076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8802]
 gi|256588354|gb|ACU99240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8802]
          Length = 501

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/501 (30%), Positives = 247/501 (49%), Gaps = 16/501 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KLQDL+ K  P +     I P    +R++  + ++S   Q G +F+ + G + DG  F  
Sbjct: 3   KLQDLLAK-VPTI---QEIPPHPSLQREVKGICTNSHACQQGDLFIGMPGTRVDGGQFWT 58

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+  GA A +++   +          +  +++ ++     +  A+  Y    +   ++ 
Sbjct: 59  SALEAGAVAAIITPEAAAHFPPT---PDVCVIIAEDMISVSAQLATAFYNYPTQQLKMIG 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++    +S   +  +G   T    F Q    TTP  + L + L+   
Sbjct: 116 VTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  +  +E SSH L Q R+ G +     F+NL +DH+DYH+  + YF+AK  LF    
Sbjct: 176 DAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPDY 235

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                AII  DDAY + +++          SV       +   +         T+     
Sbjct: 236 LA-KRAIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTPQG 294

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GR 357
              F  PL G+F + N L A    + +G+D   V+  L +   VPGR E V  + +    
Sbjct: 295 TIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQVINQLPQFMGVPGRMERVQISDQQEIS 354

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP+MG+I+  LAD+++VT 
Sbjct: 355 VIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVVTS 414

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP++I  +I+ GIP     +   +R  AI  AI+     D +++AGKGHE   I
Sbjct: 415 DNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIHQAIQQAQPGDGVLIAGKGHEDYQI 474

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           +   EK    D +  ++ L +
Sbjct: 475 LGT-EKIHFDDREQAKKALAV 494


>gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
 gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
          Length = 496

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/508 (31%), Positives = 254/508 (50%), Gaps = 29/508 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +  K   +++  L    ++     +I +V++DSR ++ G +F+A+ G   DGH ++ +A+
Sbjct: 1   MYMKHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAV 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTG 122
             GA A++VS           I S+  ++ V++TR  +       +        ++ VTG
Sbjct: 61  EAGAVAVLVSKPVE-------ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++    ++ I +  G     IG     I   +     TTP  + L   L  +  +G
Sbjct: 114 TNGKTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEG 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---- 237
           VTH  +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++    
Sbjct: 174 VTHCVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPN 233

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
            +     A+I  DDAY   V+++       +++    G   ++   V       + T+S 
Sbjct: 234 QVKSGKGAVINIDDAYGHRVVEKTTAP---IITYSIDGSGTLNAHDVDMTPKSSRYTVSY 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G D+       G F VYN L A G C+  GI    + + L+    VPGRFE +    + 
Sbjct: 291 DGHDYTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQP 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  V
Sbjct: 350 FAVVVDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYV 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T DNPR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKG
Sbjct: 410 TSDNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKG 469

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLI 496
           HE   I+ +       D +  R  L  I
Sbjct: 470 HEDYQILKDKTIH-FDDREEARAALKEI 496


>gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
 gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
          Length = 483

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 167/508 (32%), Positives = 260/508 (51%), Gaps = 38/508 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       I  +   + +I  V+ DSR I+ G +FVA+ G + DGH FI
Sbjct: 1   MKLNELLKNITP-------IKIIGNDDVEITGVNIDSRRIKTGHLFVAMKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA +++        D    ++     + V++T   +   A+  YG     +  +
Sbjct: 54  GKAIELGAISVLCE------DLPKVLQEGITYVQVESTEDAVGKVATLFYGDPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK+++A+ +  + ++ G     +G  ST+ ++  D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHK---VGLLSTVCNYIDDVEVPADHTTPDPIELNELL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +   G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F
Sbjct: 165 AKMVEAGCEYAFMECSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L PK++ AI  ADD     +M +   A  +  S+     F   +      + + + + 
Sbjct: 225 DSL-PKDAFAITNADDKNG-MIMVQNTKATVKTYSIRTLADF---RARILECHFEGMYLE 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++G++        G+F V N L   G  I +G     VL  L  LH V GR E + +   
Sbjct: 280 IDGREVGV--QFIGKFNVSNLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIHSPE- 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  +L  I  +    G +I V G GG+RD+GKRP+M + A+  +D 
Sbjct: 337 GFTAIVDYAHTPDALANVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDK 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  M  K DV++VAGK
Sbjct: 397 VIITSDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGL 495
           GHET   +  G K    D +++ EI  +
Sbjct: 457 GHETYQEIK-GVKHHFDDKEVLHEIFKV 483


>gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
          Length = 484

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 171/502 (34%), Positives = 271/502 (53%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   + +  +
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG  +  I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K         +V +   + +      ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGLKTKVSAFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E  + +F   +PGE+ +YN+L        + I    + E L  + V+PGR E V     
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKN 340

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+  +    F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ + E     + +++ +IL
Sbjct: 461 YQILKD-ETIHFDEREVVYDIL 481


>gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
 gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
          Length = 494

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 254/505 (50%), Gaps = 29/505 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    ++     +I +V++DSR ++AG +F+A+ G   DGH ++ +A+  G
Sbjct: 2   KQLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAVESG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS           + S+  ++ V++TR  +       +        ++ VTGT+G
Sbjct: 62  AVAVLVSKPVE-------VSSDVCVITVEDTRAAMMSCVPYFFDYPANSMRMIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG     I   +     TTP  + L   L  +  +GVTH
Sbjct: 115 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LP 239
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++     + 
Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
               A+I  DDAY   V+++       +++    G   ++   V       + T+S +G 
Sbjct: 235 SGKGAVINIDDAYGHRVVEKTTAP---IITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGH 291

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D+       G F VYN L A G C+  GI    + + L+    VPGRFE +    +   +
Sbjct: 292 DYTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAV 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  VT D
Sbjct: 351 VVDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSD 410

Query: 419 NPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE 
Sbjct: 411 NPRTEDPIQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ +       D +  R  L  I
Sbjct: 471 YQILKDKTIH-FDDREEARAALKEI 494


>gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
 gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
          Length = 484

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/507 (31%), Positives = 251/507 (49%), Gaps = 38/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++I       +N+L    +   +R I  +  DSR +  G +FVAI G + DGH +I
Sbjct: 1   MKLEEIIKAV---TVNEL----IGSADRDITGIQIDSRLVGPGHLFVAIKGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  IV             IR     + + +T   +   A+  YG     +  +
Sbjct: 54  QKAIENGACGIVCEQ------LPEEIRPEVTYIRLADTEGAVGKLATAFYGDPTSKLDLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK+++A+ + ++ ++ G     +G  ST+ ++  D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYKMFRQFGYK---VGLLSTVCNYIDDEAIPADHTTPDPITLNRLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ +G  +  +E SSH + Q R+ G++   G FTN+ RDH+DYH+T + Y  AK   F
Sbjct: 165 GRMADEGCKYAFMEVSSHAIAQRRIAGLRFAGGIFTNITRDHLDYHKTFENYLKAKKAFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L PK + A+   DD   K ++    N   R+ +   +      K          + + 
Sbjct: 225 DNL-PKSAFALTNLDDKNGKVMV---QNTKARIAAYSLR-TLCDFKGKVLEDGFDGMLLD 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +  ++ +      G F   N L   G    +G  S  VL  L  L  V GRF+ +  + R
Sbjct: 280 INNREVNVR--FIGRFNASNLLAVYGAACLLGKPSEEVLIALSTLCPVAGRFDAL-RSRR 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  +L  I  +    GR+I V G GG+RD+GKRP+M + A+  +D 
Sbjct: 337 GYTAIVDYAHTPDALVNVLNAIHEVLRGQGRVITVVGAGGNRDKGKRPLMAQEAVKQSDK 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR EDP+ I  +++ G     +   +   +R EAIRTA  +   QDV+++AGK
Sbjct: 397 VIITSDNPRFEDPQDIINDMLAGLDKDDMKKVLSIVDRKEAIRTACMLAQPQDVVLIAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           GHE    +  G K    D +I+  I  
Sbjct: 457 GHENYQEIK-GVKHHFDDKEIVNGIFA 482


>gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
 gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
          Length = 491

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 251/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  ++  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNRKKYAVLNSDDPVAEEYMR---STAATVVTYGIDVSSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  D    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +   +G +  + GCGGDRD+ KRP+M  +A++ A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  ++I G  G  +    +R EAIR AI     +D++++AGKGH
Sbjct: 401 QAIYTSDNPRSEDPVAILDDMIKGAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQIIGK-EVHHFDDREVAKEAI 483


>gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
 gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
          Length = 482

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/473 (34%), Positives = 262/473 (55%), Gaps = 25/473 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++  ++ +S+ ++ G++F AI G + DGH FI +A  +GA A+VV    S         
Sbjct: 21  KRVKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPVS--------- 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S  P+++V++TRK L   A   +GK  E +  + +TGT+GK++    +++I   +G  + 
Sbjct: 72  SKVPVIIVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTG 131

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     +      +  TTP  I   + L      G  +V  E SSH LDQ+R+   + 
Sbjct: 132 LIGTIYYRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYPTRF 191

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL +DH+DYH+T + YF +K +LF E   +    II ADD Y K ++K  H   
Sbjct: 192 EAVLFTNLSQDHLDYHKTMEDYFASKAKLFTE--YESKVKIINADDTYGKRLLKITHG-- 247

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +++ G +G    L           + I+ +GK+++F   L G+FQ YN   A    + 
Sbjct: 248 -EIITYGKKGDLKIL-NFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAYALW 305

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            GI+  L+   L+ ++ VPGRFE V   S    + +DYAHT +++E +L+  R ++ G++
Sbjct: 306 KGIEPDLIQRALKCVN-VPGRFEVVH--SDKFTVIIDYAHTPDAVENVLRTARKLSKGKL 362

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441
           I VFG GG+RD+ KRP+MGK A   +D+ I+T DNPR E+PEKI  +I+ GI      I 
Sbjct: 363 ISVFGAGGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGISEKDKVII 422

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + +R +AI+ AI+M  + D++ + GKGHE    +  G K    D  +++EILG
Sbjct: 423 EADRRKAIKKAIDMAKEGDMVAILGKGHEDYQEIK-GVKYPFSDAQVVKEILG 474


>gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2866]
          Length = 488

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 243/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +      FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKVAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
 gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
          Length = 495

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/511 (30%), Positives = 246/511 (48%), Gaps = 39/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQ L       L+    +      +     + +DSR +Q G +F+ + G   DGH + 
Sbjct: 1   MQLQQLAS-----LLAVSRVVGDGTVDC--RGIGADSRRVQQGDLFLCLPGFTVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAIA GA A+VV     +           P LVV + R  +++ A  ++      +  +
Sbjct: 54  EQAIASGAAALVVERELDVP---------VPQLVVKDARHAMAVLADYMFDSPSRRMRMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++   +++I + +G+++  IG         +     TTP  + L + L  +
Sbjct: 105 GITGTNGKTTITYLIEKIMKDAGVNTGLIGTIQMRYGGQSYPMSGTTPEAVELQRYLGNM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + QGV    +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK  LF  L
Sbjct: 165 AEQGVQCCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRL 224

Query: 238 LP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
                        A++ ADD  S  +  +      +V++ G + +  +    +       
Sbjct: 225 GNAFSRDASDSKYAVLNADDPASSYLQAQTA---AQVITYGVEKESDVQASSITIGSKGT 281

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +S    D D    + G+F VYNAL A    +  GI    +   LE +  V GR E V
Sbjct: 282 SFHVSTFKGDTDIELRMVGKFNVYNALAAITAALLEGISLVDIKRSLESIAGVDGRVEPV 341

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT + LE +L+ ++    G++  VFGCGGDRD+ KRP+MGKIA   
Sbjct: 342 DA-GQPFAVIVDYAHTPDGLENVLRTVKEFAVGKVWCVFGCGGDRDRTKRPLMGKIAARY 400

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +D + +T DNPR+EDP+ I  +I  G+         +    +R  AI  A+EM +  DV+
Sbjct: 401 SDHSFITSDNPRTEDPKVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVV 460

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHET  ++         D  + +E +
Sbjct: 461 LIAGKGHETYQLIGK-TVHEFDDRIVAKEAI 490


>gi|298293105|ref|YP_003695044.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
 gi|296929616|gb|ADH90425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
          Length = 495

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 212/480 (44%), Positives = 281/480 (58%), Gaps = 8/480 (1%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL+ + + + +      + E + DSR  +AG +F A+ G+K DG  F   A+A+G  A
Sbjct: 17  LRELVGEDADYALADPGLIVGEPALDSRKARAGDVFFALAGSKADGLSFARDAVARGVLA 76

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V  +             +   + V N R+ ++L A+R + K PE I AVTGTSGK+SVA
Sbjct: 77  VVAEAER-----PPWFDPSVSYVRVGNARRAVALAAARAFPKQPETIAAVTGTSGKTSVA 131

Query: 131 SFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +F +QI  R G +S  +G    ++ S A    LTTP PI L + L  L+ +GVTH+ +EA
Sbjct: 132 AFARQIWARLGHASASLGTLGVVTPSGAVYGSLTTPDPIELQRTLHMLAKEGVTHLCLEA 191

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGLDQ+RLDG++L AG FTNL RDH+DYH + +AY +AKMRLF ELLP+   A ++ D
Sbjct: 192 SSHGLDQYRLDGVRLSAGGFTNLSRDHLDYHPSMEAYLDAKMRLFRELLPRGGGAAVWVD 251

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 V + A +    VL +G  G  I L         Q + +  +G+ F    PL G 
Sbjct: 252 STEGSHVAQVAADHELNVLGIGVAGAGISLLARHDEGLGQLLEVEADGRRFTLRLPLVGA 311

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           FQ  NALVAAGL +  G  +   L  LE L  VPGR E VGT   G  ++VDYAH  ++L
Sbjct: 312 FQACNALVAAGLVLLTGAGAREALLALETLEGVPGRLELVGTKD-GAGVFVDYAHKPDAL 370

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +R   +GR+IVVFGCGGDRD+GKRPIMG IA + AD+ IVTDDNPRSEDP  IR
Sbjct: 371 ANALDALRPYATGRLIVVFGCGGDRDRGKRPIMGAIAAEKADVVIVTDDNPRSEDPAFIR 430

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           A I+   P   E G+R EAI  AI M    DV+++AGKGHET  IV +       D D  
Sbjct: 431 AAILEAAPEAQEIGDRAEAIAAAIGMAKSGDVVLIAGKGHETGQIVGD-RTLPFSDRDTA 489


>gi|218245162|ref|YP_002370533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8801]
 gi|218165640|gb|ACK64377.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8801]
          Length = 501

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/501 (30%), Positives = 247/501 (49%), Gaps = 16/501 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KLQDL+ K  P +     I P    +R++  + ++S   Q G +F+ + G + DG  F  
Sbjct: 3   KLQDLLAK-VPTI---QEIPPHPSLQREVKGLCTNSHACQQGDLFIGMPGTRVDGGQFWT 58

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+  GA A +++   +          +  +++ ++     +  A+  Y    +   ++ 
Sbjct: 59  SALEAGAVAAIITPEAAAHFPPT---PDVCVIIAEDMISVSAQLATAFYNYPTQQLKMIG 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++    +S   +  +G   T    F Q    TTP  + L + L+   
Sbjct: 116 VTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  +  +E SSH L Q R+ G +     F+NL +DH+DYH+  + YF+AK  LF    
Sbjct: 176 DAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPDY 235

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                AII  DDAY + +++          SV       +   +         T+     
Sbjct: 236 LA-KRAIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTPQG 294

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GR 357
              F  PL G+F + N L A    + +G+D   ++  L +   VPGR E V  + +    
Sbjct: 295 TIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQIINQLPQFMGVPGRMERVQISDQQEIS 354

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP+MG+I+  LAD+++VT 
Sbjct: 355 VIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVVTS 414

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP++I  +I+ GIP     +   +R  AI  AI+     D +++AGKGHE   I
Sbjct: 415 DNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIDQAIQQAQPGDGVLIAGKGHEDYQI 474

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           +   EK    D +  ++ L +
Sbjct: 475 LGT-EKIHFDDREQAKKALAV 494


>gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Haemophilus influenzae 10810]
          Length = 488

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 244/488 (50%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVITTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|117924068|ref|YP_864685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
 gi|117607824|gb|ABK43279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
          Length = 495

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/493 (34%), Positives = 260/493 (52%), Gaps = 19/493 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K     I+QL++  +   E  I ++ +DSR  + G +F A+ G++ DG  +IPQA+  
Sbjct: 4   TLKSLAANIDQLTV--LGDGETVITQLCNDSRLCEPGSLFAALPGSRVDGRDYIPQALEL 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
            A AI+        D S ++  NTP L+  + R+ L+  A+  YG+  + +  + +TGT+
Sbjct: 62  EAAAIL-------HDGSLSLDPNTPQLIHPDPRRALAHVAAAFYGQPQKKLKSIVITGTN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GKS+VAS    I + SG     I      I         TTP  I L   L+ +      
Sbjct: 115 GKSTVASMCATILRHSGQRVGLISTVGIDIEGQKLATSHTTPDAITLYGLLADMVQANCR 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +EASSH LDQHRL GI+     FTNL RDH+DYH    AYF AK +LF E  PK   
Sbjct: 175 WLVMEASSHALDQHRLVGIQPDVALFTNLSRDHLDYHGDMGAYFQAKAKLFREYHPK--L 232

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDF 302
           A++ + DA+++ +       G  V + G   +  ++ K++ A  +  +  +  + +    
Sbjct: 233 ALLPSSDAHAQALNSICREQGVAVQTYGRVARQGVYAKQISAAIDCTRFVLQQKNQSAPV 292

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
               PG F + NAL AA  C+ + +D   V E L +   V GR + +    +   + VD+
Sbjct: 293 TLMAPGRFNLDNALAAASACLGMDLDLETVAEGLNRFQSVAGRVQAIH-EGQNFAVLVDF 351

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++L+ +L ++R +T G++ VVFGCGGD+D GKRP MG+ A  LA   I+TDDNPRS
Sbjct: 352 AHTPDALDRLLSSLRPLTPGKLWVVFGCGGDKDSGKRPHMGECAGRLAHFPIITDDNPRS 411

Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           EDP  IRA+I+ G       E  +R +AI  A+      D +V+AGKGHE   I  +G  
Sbjct: 412 EDPAAIRAQIMRGCRNRNAQEMDDREDAITYALVNAQPGDTVVIAGKGHEQSQIGAHGAT 471

Query: 481 KMSVDCDIIREIL 493
               D ++ R+ L
Sbjct: 472 P-FSDAEVARQAL 483


>gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
 gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
          Length = 499

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 149/503 (29%), Positives = 237/503 (47%), Gaps = 36/503 (7%)

Query: 11  FPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLFIPQAI 64
             EL N L I   +   + +I  +  DSR I  G +F+ + G   DG     H F+  A+
Sbjct: 10  LKELANLLLIKETIGDMDVEITGLEMDSRKITDGDLFICVSGI--DGFLEDRHQFVEGAV 67

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
             GA A++V    +++          P ++V + R  +++ AS  YG       ++ +TG
Sbjct: 68  KNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITG 118

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++ +  +++I    G  +  +G     ++S      + T  P  L + L  + +Q 
Sbjct: 119 TNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVNSKWYPTDINTQEPPTLQRNLQMMKNQN 178

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK- 240
             +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  LF  L    
Sbjct: 179 ADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHVKGLLFARLGNDL 238

Query: 241 ----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
               +  A++ ADD   +   K        V++ G   +  +  K +       +  +S 
Sbjct: 239 STTEKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNRADVQAKNINLSPKGIRFLVSS 295

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              + +    L G F VYNAL A  + I  GI    + + L  L  + GR E +  N + 
Sbjct: 296 FNGEIEISLNLVGRFNVYNALAAITVAIVEGIPLTNICDSLSNLKCIEGRMEIIDEN-QD 354

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   +D   +
Sbjct: 355 FLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFI 414

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++++AGKGHE
Sbjct: 415 TSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHE 474

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+ +       D +  R+ +
Sbjct: 475 TYQILKDSTIH-FDDKEKARQAI 496


>gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
          Length = 488

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/488 (31%), Positives = 244/488 (50%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  AI  GA A+V  
Sbjct: 4   LTALFNLPELKDDVELHSMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAIHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  S  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRSAVMGTIGNGLLGQIIEAKNTTGSAVEIQSSLSNFKQAGADFASIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGHQWLTELPDAIAVSMNADFKVGLHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 489

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 246/488 (50%), Gaps = 14/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P+   +  +  +  DSR +  G +FVA+ G++ D   F+PQAI+ GA A+++ 
Sbjct: 4   LTALFDLPV-LSDINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +    +  S   ++N P++   +    LS  A + YG   E   ++ VTGT+GK++V+  
Sbjct: 63  TDLENEHLSIQWQNNVPVIRYYHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQL 122

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  +G     +    ++ + TT S + +   L+    +G    S+E SS
Sbjct: 123 LAQWATLLGHKAAVMGTIGNGLLDQVKEAKNTTGSAVEVQANLADFVEKGADFASIEVSS 182

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL Q+R++ +K  +  FTNL RDH+DYH+T + Y  AK R F +L  +     + ADD 
Sbjct: 183 HGLAQYRVEALKFKSAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLASELQI--LNADDP 240

Query: 252 YSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                +    N+        +     ++++  ++   H    +       +     PL G
Sbjct: 241 IGAAWLNELPNSIAVSCHPNFHATSKQWLYATEIRFTHEGAVIEFVSSWGNGTLHSPLIG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+A  + +A+G     ++  + +L  V GR E +    +   + VDYAHT ++
Sbjct: 301 AFNVSNLLLATAVLLALGYSFDDLIRTVSQLKGVNGRMELIKKAGK-PTVIVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L + R    G++  +FGCGGDRD GKRP+M K A   AD+ IVT DNPR+EDP KI
Sbjct: 360 LEKALNSARQHCKGKLWCIFGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKI 419

Query: 429 RAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G   +       +R EAI+  IE   + DV+V+AGKGHE   I+ +       D
Sbjct: 420 EADILTGFSRMEDVGVIPDREEAIKFTIENAVEDDVIVIAGKGHENYQIIGDKTLH-FSD 478

Query: 486 CDIIREIL 493
            ++    L
Sbjct: 479 QEVAEAYL 486


>gi|152979591|ref|YP_001345220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841314|gb|ABR75285.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           succinogenes 130Z]
          Length = 488

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/503 (32%), Positives = 246/503 (48%), Gaps = 25/503 (4%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L  L+  + PEL              +  E+  DSR ++ G +FVAI G+  DG  F
Sbjct: 1   MKNLTALLGLNSPEL-----------DGIRFTEMCLDSRSVKTGCLFVAIKGHNVDGRRF 49

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118
           IP AI + A A++       +        N P++   N  + LS  A + Y    + ++ 
Sbjct: 50  IPVAIERHAAAVLAECDNESEHLQVRFERNIPVISYFNLPEHLSEIADKFYDGPSQRLIL 109

Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
             VTGT+GK++V+  + Q  +  G     +G     +    Q    TT S I +  +L+ 
Sbjct: 110 TGVTGTNGKTTVSQLLAQWARILGNIPAVMGTVGNGLLGQLQSAANTTGSAIEVQSSLAR 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG    ++E SSHGL Q R++ +K  A  FTNL RDH+DYH +  AY +AK RLF  
Sbjct: 170 FIEQGADFAAIEVSSHGLVQKRIEALKFTAVIFTNLSRDHLDYHGSMTAYADAKKRLFTA 229

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTI 293
           L       II ADD   +  ++    A     +  +Q +   ++    +    +  ++  
Sbjct: 230 L--PSKYQIINADDEVGRTWLQELPRAVAVSCNPDFQPQQKNWLKATALSFTGDGAEIKF 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    D      L G F V N L+     + +G     ++  + +L  V GR E +    
Sbjct: 288 ASSWGDGVLASRLIGAFNVSNLLLVLATLLCLGYPLQTLIRTVSQLRGVCGRMEMLKAVH 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT ++LE  L+  RT   G++  +FGCGG+RD GKRP+M +IA  LAD  
Sbjct: 348 K-PTVIVDYAHTPDALEKALQAARTHCRGKLWCIFGCGGERDNGKRPMMAQIAESLADRV 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           IVTDDNPR+EDPEKI A+I  G   +        R  AI  AI+   + DV+++AGKGHE
Sbjct: 407 IVTDDNPRTEDPEKIVADITAGFARLKNVQIIHAREAAICAAIQSAAENDVILIAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   EK+   D +  ++ L
Sbjct: 467 DYQIVGK-EKRYFSDQETAKKYL 488


>gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
 gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium cellulovorans 743B]
 gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
          Length = 481

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/495 (32%), Positives = 250/495 (50%), Gaps = 29/495 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++LI     E++N          +  IN +  DSR + +  +FV I G   DGH F 
Sbjct: 1   MNLKELIKDLDYEVLNG-------DIDVDINGIQYDSRKVNSSDVFVCIPGFTVDGHNFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+  GA  I+            T   +  I+ V NTRK L+  ++  Y      +  +
Sbjct: 54  EKAVNSGANVIICEKDI-------TAYKDVTIIKVKNTRKALAKVSAVYYNNPERRLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I +++G     IG  +  I         TTP  + L K  + +
Sbjct: 107 GVTGTNGKTTSVFMLKAILEKAGFKVGLIGTIANYIGDKKLKAERTTPESLELFKLFNDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  GV +  +E SSH LD  R+ GI+  +G FTNL +DH+DYH+T + YFN+K +LF   
Sbjct: 167 TEAGVDYCVMEVSSHSLDLDRVYGIEFNSGIFTNLTQDHLDYHKTLENYFNSKAKLFT-- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 +II  DD Y   +  +        +    +   +  + +          +   G
Sbjct: 225 --VSKSSIINLDDDYGVALADKTQEKLTYAI---DKNADLKAENINLTSRGSTFELEYNG 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           +   F   +PG++ + NAL   G  +  G+   ++ E L+ L  VPGR E V      G 
Sbjct: 280 EKEIFNINIPGKYNIQNALGCIGSILKEGVHLKVIKEGLDSLKAVPGRCEIVTQGRNLGF 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I VDYAHT +SL  ILK  R  T GR+I VFGCGGDRD  KR IMG I  + +DIAI+T
Sbjct: 340 EIIVDYAHTPDSLLKILKTAREFTDGRLISVFGCGGDRDNSKRHIMGGIGSENSDIAIIT 399

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPRSE+P +I  +++ GI    ++ + +R +AI+ A++     D++VVAGKGHE   +
Sbjct: 400 SDNPRSEEPSEIIKQVVSGIKKDNYLVEEDRRKAIKLAMKTAKNGDIIVVAGKGHEDYQV 459

Query: 475 VTNGEKKMSVDCDII 489
           + +  K +  D  I+
Sbjct: 460 LKD--KTIDFDERIV 472


>gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 531

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 259/503 (51%), Gaps = 39/503 (7%)

Query: 9   KDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  +L++ L    +   E+  +  ++  S  + +G +FVA+ G + DGHL+I +AI +G
Sbjct: 10  KNLAQLLSGLKYLRIWGDEQVPVQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERG 69

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A  +V+  A                + V +TR  L+  A+  Y     N+  + +TGT+G
Sbjct: 70  AAVVVLEDAVE-------PTPGVVCVQVPDTRLALAHMAAAFYDHPSCNLTVVGITGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  ++ I Q SG     IG       S  + + +TTP  + L   L+ + +  V  
Sbjct: 123 KTTTSYLLEAIWQASGAQVGVIGTVNCRFGSQVRSSPVTTPESLDLQDLLAEMRAAAVDC 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-- 242
             +E SSH LD  R+  ++  AG FTNL +DH+DYH   ++YF  K RLF ELL      
Sbjct: 183 AIMEVSSHALDLKRVQAVRFAAGLFTNLSQDHLDYHGDMESYFAVKSRLFCELLTDCGDG 242

Query: 243 --PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
              A+I  DD + ++++ +       VL+ G+  G  I  + +   H   Q  +      
Sbjct: 243 PQLAVINRDDPWGQKLLPQTSPP---VLTYGFAAGADIRPEDITLTHQGIQARLHTPYGR 299

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + PL G + +YN L A+G  + +GI    V+  L  +  V GR E V    +   + 
Sbjct: 300 LDIVSPLMGRYNLYNILAASGAALGLGISPEHVVTGLANITGVDGRLEPVAAPGQ-PLVL 358

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE +L  ++ +   RII VFGCGGDRD+ KRP+MG++    +D+ I+T DN
Sbjct: 359 VDYAHTPDALEKVLAALKALDFDRIITVFGCGGDRDRRKRPLMGQVVARGSDVVIITSDN 418

Query: 420 PRSEDPEKIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           PR+E+P  I  +I+ G+                  G++   +R +AIR AI + N  +V+
Sbjct: 419 PRTEEPLAIIEDILAGLREMNCPRLDVSEAREGHRGYLVIADRRQAIRQAIAIGNPGEVI 478

Query: 463 VVAGKGHETVHIVTNGEKKMSVD 485
           ++AGKGHET  I+  G +++  D
Sbjct: 479 LLAGKGHETYQIL--GTRRIHFD 499


>gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium johnsoniae UW101]
 gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium
           johnsoniae UW101]
          Length = 487

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/504 (32%), Positives = 262/504 (51%), Gaps = 33/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++YK   E +   +       +  I ++  DSR +++  +FVAI G+  DGH +
Sbjct: 1   MKVLKDILYKVTIESVTGST-------DIDIQKIEFDSRKVESNDVFVAIRGSLSDGHDY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI  GA+AI+             I+ +   + V +T   L+  A+  +G     +  
Sbjct: 54  IEKAIQLGAKAIICDK------LPENIQKDVTYIQVKDTNTALAFMAANYFGDPSAKLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++AS + Q+ +++G     +      +         TTP  + +   L+ 
Sbjct: 108 VGVTGTNGKTTIASLLFQLFEKAGFKVGLLSTVKIVVDKTEYPATHTTPDSLTINHYLNE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  GVTH  +E SSHG+ Q R + +  + G FTNL  DH+DYH T   Y + K   F+ 
Sbjct: 168 MAEAGVTHCFMEVSSHGIHQKRTEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKKSFFDS 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK +  +   DD     ++    N   + L+   +    +  ++          + ++
Sbjct: 228 L-PKTAFVLSNIDDKNGSVML---QNTAAKKLTYALKSYADYRAQILESQLSG---LLLK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D +    L G F  YN L   G  + +GIDS   L  L  L  V GRF+++  +  G 
Sbjct: 281 VNDNEVWVKLIGTFNAYNVLAIYGTAVELGIDSLEALRLLSDLESVSGRFQYI-VSDNGI 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +LK I  I +   ++I V GCGG+RD+ KRPIM KIA DL+D AI
Sbjct: 340 TAVVDYAHTPDALENVLKTINDIRTKNEQLITVVGCGGNRDKTKRPIMAKIATDLSDKAI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR+EDPE I  E+  G+ G      +   +R +AI+TA ++   +D++++AGKGH
Sbjct: 400 LTSDNPRNEDPEVILDEMEQGVEGHNYKKVLRITDRKQAIKTACQLAQSKDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + NG +    D + ++EIL
Sbjct: 460 ETYQEI-NGVRHHFDDMETVKEIL 482


>gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
 gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
          Length = 500

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 148/508 (29%), Positives = 237/508 (46%), Gaps = 37/508 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLF 59
           DL  K+   L+  L    +     +I  +  DSR I +G +F+ + G   DG     H F
Sbjct: 7   DLKLKELANLL--LIKETIGDMNVEITGLEMDSRKITSGNLFICVSGI--DGFLEDRHQF 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  A+  GA A++V    +++          P ++V + R  +++ AS  Y        +
Sbjct: 63  VEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYSYPSNEMKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++ +  +++I    G  +  +G     I S      + T     L + L  
Sbjct: 114 IGITGTNGKTTTSYLLEKILTDYGFQTGIMGNNGVKIGSKWYPTDINTQESPALQRNLQM 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + +    +  +E +S GL   R+ G       FTNL +DH+DYH T + Y + K  LF  
Sbjct: 174 MKNHNTDYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFEEYKHVKGLLFSR 233

Query: 237 LLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQ 290
           L        +  AI+ ADD   +   K        V++ G   G  +  K +       Q
Sbjct: 234 LGNDFSATDKKIAILNADDPSVEYFKK---VTSAEVITYGINNGADVQAKSITLSSKGIQ 290

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +S    + +    L G F VYNAL      +  GI    + + L  +  + GR E + 
Sbjct: 291 FLVSSFNGEIEINLNLVGRFNVYNALAVITATLVEGIPLTNISDSLSHVKSIEGRMEIID 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N +   + VDYAH+ ++LE +L  I   +  +II VFGCGGDRD  KRPIMG+IA   +
Sbjct: 351 EN-QDFLVIVDYAHSPDALENVLSTISEFSKAKIITVFGCGGDRDAKKRPIMGEIAGGYS 409

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI+M +  D++++A
Sbjct: 410 DFVYITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAIQMASSNDIVLIA 469

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHET  I+ +       D +I R+ +
Sbjct: 470 GKGHETYQILKDSTIH-FDDKEIARQAI 496


>gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 491

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/497 (31%), Positives = 242/497 (48%), Gaps = 21/497 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++       I    + P  + + +++ + SD+R ++   IFVAI G   DGH FIP+AI 
Sbjct: 1   MLASTLISEIKFKVVSPKDYDDFEVSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIR 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
           +GA+AIVV                  I+ V+NT + L++ A + YG       ++ VTGT
Sbjct: 61  KGAKAIVVQEETDD-------IQGVTIVRVNNTNRALAILADKFYGSPSSSMKVIGVTGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++V   ++ I +     +  IG     I         TTP  + L K  + +  + V
Sbjct: 114 NGKTTVTHMIEAIFRDQKDRTGLIGTMYRRIGEKTYPTANTTPDILTLQKTFAEMKKENV 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--- 239
              ++E SS  L Q R+ GI +    FTN  +DH+DYH+T   Y +AK  LF +L     
Sbjct: 174 KAAAIEVSSIALIQGRVWGIDVDTAVFTNFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYG 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGK 298
            +  A+I  DD   K     A +   +VL+ G +   +     V          + V   
Sbjct: 234 NDKTAVINIDDEMGKNF---AQDTATQVLTYGIKNDAMIKASNVNIHSQGTDFDLKVFED 290

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           ++       G F VYN L A G   A G+    ++E LEK   V GR + + ++  G   
Sbjct: 291 EYHLHVKTVGMFNVYNLLAAFGAAYANGVSVHAIIESLEKFPGVKGRLQLI-SSDCGISA 349

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDY+HT + L   L+ I    SG +  V GCGGDRD  KRP M +IA++ ++  I T D
Sbjct: 350 IVDYSHTPDGLLNALETINEFASGDVYCVVGCGGDRDATKRPKMAQIAVEYSNHPIFTSD 409

Query: 419 NPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+EDPEKI  +++ G+P        +R EAI+ A+   N  D++++AGKGHE   I+ 
Sbjct: 410 NPRTEDPEKILDQMLSGVPEKNVPVYLDRREAIQAAVNAANPGDIILIAGKGHEDYQIIG 469

Query: 477 NGEKKMSVDCDIIREIL 493
           +  K    D +   + L
Sbjct: 470 H-TKHHFDDAEEATKAL 485


>gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
 gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
          Length = 484

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 158/464 (34%), Positives = 231/464 (49%), Gaps = 16/464 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +++ DSR +  G +F+A+ G   DGH FI  AI +GA AI+      +Q       +  P
Sbjct: 21  DITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGAVAILCERRVPIQH-----DTQVP 75

Query: 92  ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + VVD  R  L   A R YG   H   ++ +TGT+GK+S   +V Q     G     IG 
Sbjct: 76  VCVVDGLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGIIGT 135

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +     D   TTP  I L + LS   SQG    ++E SSHGLDQ R+DG+      
Sbjct: 136 NGQGLWGQLSDTLNTTPDVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGRVDGLHFSTAV 195

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH + +AYF AK RL     P    A++  DD + ++  +R         
Sbjct: 196 FTNLSRDHLDYHHSMEAYFEAKWRLMR--WPGLRNAVVNLDDEWVQKNRERIMAERVWTY 253

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           ++        L +V          +     D D    L G F + NAL A  + +A G+ 
Sbjct: 254 ALETDADVQAL-EVNCHEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVMLAEGVP 312

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                  +   + V GR E + +      + VDYAHT ++LE  L++ R   +GR++V+F
Sbjct: 313 VNTAARVISNCNPVKGRMETLRSAY-SPTVVVDYAHTPDALEKALQSCREHVNGRLVVIF 371

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445
           GCGGDRD GKRP M ++A   AD+ +VTDDNPR+E   +I A+I  G      +    +R
Sbjct: 372 GCGGDRDGGKRPEMARVAEQYADVVVVTDDNPRTEPSARIIADIEQGFSTEANYRVIPDR 431

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            EAI   +    + DV+++AGKGHE+   + +G +    D D +
Sbjct: 432 REAIVQTLNDSERSDVVLIAGKGHESYQEI-DGVRHPFSDQDTV 474


>gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 483

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/491 (33%), Positives = 250/491 (50%), Gaps = 25/491 (5%)

Query: 13  ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           ELI  +    +       I+ V+ DSR I+ G +FVAI G + DGH +I +AI  GA A+
Sbjct: 5   ELIKDIKCTDILGDTNVSISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +   A           S+   +VV +T   +   A+R YG   +   ++ VTGT+GK+++
Sbjct: 65  LCEKA------PKEPLSDITYIVVTSTEDAVGKVATRFYGDPSKHLKLIGVTGTNGKTTI 118

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A+ +  + ++ G     +      I         TTP PI L + L+ +  Q   +V +E
Sbjct: 119 ATLLYNMFRKLGHRCGLLSTVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHCEYVFME 178

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH + Q R+ G+    G FTNL RDH+DYH+T + Y NAK   F+ L PK + AI  A
Sbjct: 179 CSSHAIAQKRIGGLNFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDHL-PKSAFAITNA 237

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD     VM +   A  +  SV     F      C     Q + + ++G++        G
Sbjct: 238 DDKNG-MVMVQNTKATVKTYSVRTAADFKARIIECHF---QGMYLEIDGQEVGV--QFIG 291

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F V N L        +G     +L  +  LH V GR + +  + +G    VDYAHT ++
Sbjct: 292 KFNVSNLLAVYATARMLGKQREEILIAMSTLHSVNGRMDTLH-SPQGFTAVVDYAHTPDA 350

Query: 369 LEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           L+ +L  I  +   G +I V G GG+RD+GKRP+M K A+ L+D  I+T DNPR E+P+ 
Sbjct: 351 LKNVLLAIHEVDGKGHVITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEEPQD 410

Query: 428 IRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           I  +++ G     +   +   +R EAIRTA  + +K DV++VAGKGHET   V  G K  
Sbjct: 411 IINDMLAGLDAQDMKKVLSIVDRREAIRTACMLADKNDVVLVAGKGHETYQEVK-GVKHH 469

Query: 483 SVDCDIIREIL 493
             D +++ EI 
Sbjct: 470 FDDKEVLAEIF 480


>gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 465

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/472 (34%), Positives = 263/472 (55%), Gaps = 23/472 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++   +++DSR ++ G++F AI G + DGH F+ +A+ +GA A+VV              
Sbjct: 11  KEAQGITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVERDVEAVQR----- 65

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               ++ V+NTRK L+  A   YG+  E   ++ VTGT+GK++    ++ I ++SG  + 
Sbjct: 66  ----VIKVENTRKTLAESAHLFYGRPSESLKVVGVTGTNGKTTTTYILESILKKSGSHAG 121

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +      +  TTP PI   + L  +   G THV  E SSH LDQ+R+ G + 
Sbjct: 122 LMGTIQYRLGDKVFGSGRTTPDPITWHRTLREMVGSGATHVVAEVSSHALDQYRVWGTEF 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL +DH+DYH+  + YF AK RLF     K   A++  DD Y K + +   +  
Sbjct: 182 EAVIFTNLTQDHLDYHRDMEDYFRAKARLF--FDYKYRFAVVNTDDPYGKRLARDLGD-- 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R L+ G +G+ + ++      +  ++ +S +GK F F   L G+FQ YN   A    + 
Sbjct: 238 -RALTYGREGETLRIEDFKTGFDGSELRVSFKGKSFRFHSNLIGDFQAYNLSAALCYTLE 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GID   + E L+ +H VPGRFE V  + RG    VDYAHT ++++ +L+ +R +T  R+
Sbjct: 297 VGIDPNAIQEALKDVH-VPGRFE-VHRSDRGFIAVVDYAHTPDAMDNVLRTMRRLTKNRV 354

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441
           I VFG GG+RD+GKRP+MGK A   +D+ I+T DNPR E+PE+I  +I+ G+        
Sbjct: 355 ICVFGAGGNRDRGKRPLMGKSAEKWSDVVIITSDNPRDEEPERIIEDILKGVEDKGKVKV 414

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +R EAI  A+ +  + D++ + GKGHE    +  G K    D +++++ L
Sbjct: 415 IPDRREAIAEALNIAKEGDIVAILGKGHEDYQEIK-GVKYPFSDSEVLKKFL 465


>gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 507

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/498 (31%), Positives = 241/498 (48%), Gaps = 25/498 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DLI      +I+          + ++  ++ DSR ++ G++F A+ G K DGH FIP+
Sbjct: 4   LRDLIEGLDKPVISG-------GLDVEVAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A+GA AIV  +A            +   L V N R  L+  A+   G HP   +AV G
Sbjct: 57  ALAEGAVAIVAETAPPED-------CSVTWLHVKNARVALAEMAAAYKG-HPARSMAVGG 108

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLS 178
            +G +   +    +      +  + G   T+        +    TTP  + L   LS + 
Sbjct: 109 VTGTNGKTTTAFLLHHLLNHAHRRCGLLGTVVYDVGGDLKPATHTTPESLELQGLLSEMR 168

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-L 237
            +G   V++E SSH +DQHR  G+   A  FTNL +DH+DYH T + YF AK +LF    
Sbjct: 169 DRGCVAVAMEVSSHAIDQHRTHGVPFAAAVFTNLSQDHLDYHGTMEEYFKAKSKLFSSTA 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
             +    +I  DD + + ++  AH     +++ G                      +  +
Sbjct: 229 ASRSGKLVINVDDIWGRRLVD-AHKEHPGLVTYGLGVAADYRAVNPRYDLTGTSFELEHK 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+      P  G+F VYN+L A      +G +    ++ ++    +PGR E V  ++   
Sbjct: 288 GRSLLVRIPQIGQFNVYNSLAALAAAHGMGCNLRDTVKAMQSSPQIPGRMERVTPDNHSF 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAHT + L   L   R +   RII VFGCGGDRD+ KRP+M +   + +DI+I+T
Sbjct: 348 HVFVDYAHTPDGLVNALSTARALRPERIITVFGCGGDRDRLKRPLMARAVEEHSDISILT 407

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+EDP+ I  +   G          +R EAI TAI+   + D++V+AGKGHE    
Sbjct: 408 SDNPRTEDPQAIMDDARKGFTRSAHALIADRKEAIHTAIKGAREGDIVVIAGKGHEPYQD 467

Query: 475 VTNGEKKMSVDCDIIREI 492
           V  G K    D  + R++
Sbjct: 468 V-QGVKHPFDDRRVARQL 484


>gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 489

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 249/488 (51%), Gaps = 14/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P+   +  +  +  DSR +  G +FVA+ G++ D   F+PQ+I+ GA A+V+ 
Sbjct: 4   LTALFDLPV-LSDINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
           +    +  S   ++N P++   +    LS  A + Y    E +  + VTGT+GK++V+  
Sbjct: 63  TDLENEHLSIQWQNNVPVIHYYHLSANLSALAGKFYEHPSEKLTLVGVTGTNGKTTVSQL 122

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  +G     +    ++ + TT S + + + L+    +G    S+E SS
Sbjct: 123 LAQWATLFGHKAAVMGTIGNGLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSS 182

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +K  A  FTNL RDH+DYH+T + Y  AK R F +L P+     + ADD 
Sbjct: 183 HGLVQHRVEALKFKAAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLAPELQI--LNADDP 240

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                +    N         +Q    ++++  ++C  H    + ++    +     PL G
Sbjct: 241 IGAAWLSELPNGIAVSCRPDFQPTSKQWLYATQICFTHEGAVIDVASSWGNGTLHSPLIG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+A  + +A+G     ++  + +L  V GR E +    +   + VDYAHT ++
Sbjct: 301 AFNVSNLLLATAVLLALGYSFDELIRTVSQLKGVNGRMELIKKAGK-PTVIVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G++  +FGCGGDRD GKRP+M K A   AD+ IVT DNPR+EDP KI
Sbjct: 360 LEKALNAAREHCKGKLWCIFGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKI 419

Query: 429 RAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G   +       +R EAI+  IE   + DV+V+AGKGHE   I+ +       D
Sbjct: 420 EADILTGFSRMEDVGVIPDREEAIKFTIENAVENDVIVIAGKGHENYQIIGDKTLH-FSD 478

Query: 486 CDIIREIL 493
            ++    L
Sbjct: 479 QEVAEAYL 486


>gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 481

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 250/501 (49%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  ++    P       +  +   E ++  V  DSR +  G +FVAI G + DGH FI
Sbjct: 1   MTLSSILKNVKP-------LNVVGNAEVQVTAVDIDSRKVGPGHLFVAIKGTQVDGHAFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+AQGA A++  +        A +      + V++T   +   A+  YG+  +   ++
Sbjct: 54  SKAVAQGAVAVLCET------MPAELPQGVTFVQVESTEDAVGPVATLFYGEPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +      I   A     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH + Q R+ G+    G F+NL RDH+DYH+T + Y NAK   F+ +
Sbjct: 168 VEAGCEYVFMECSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFFD-M 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ AI  ADD      M    N    V +   +       K+   H  + + + + G
Sbjct: 227 LPKQAFAITNADDKNG---MVMVQNTRATVKTYSTRSMADFKAKILECHF-EGMYLEING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +        G+F V N L   G  + +G     +L  +  LH V GR E +  +  G  
Sbjct: 283 AEVGV--QFIGKFNVSNLLAVYGTAVMLGKRPEDILLVMSTLHSVNGRLEPL-RSPEGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VDYAHT ++LE +L  I  +    G++I V G GG+RD+GKRP+M   A+  +D  I+
Sbjct: 340 VIVDYAHTPDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR EDP+ I  +++ G     +   +   +R EAIRTA  M  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEDPQAIINDMLAGLNAQQMKKVVSIVDRREAIRTACMMAQKGDVVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIRE 491
               +  G K    D ++++E
Sbjct: 460 DYQEIE-GVKHHFDDKEVVKE 479


>gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
 gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
          Length = 488

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 244/488 (50%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
 gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
          Length = 487

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 167/503 (33%), Positives = 252/503 (50%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+Y   P       I  +   E+++  V+ DSR I+ G +F+A+ G + DGH +I
Sbjct: 1   MKLQELLYDIKP-------IQIIGDVEKEVTGVNIDSRKIEKGHLFIAMKGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            +AI  GA AI+      L+D           + V++T   +   A+  YG    +++  
Sbjct: 54  AKAIELGATAIL------LEDMPQQYTEGITYIQVESTEDSVGKVATAFYGNPSHHLILV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + +R G     +      I   A     TTP PI L   LS +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRRMGHKCGLLSTVCNYIEDKAVPADHTTPDPIELNALLSEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G+K     FTNL RDH+DYH+T + Y NAK   F+ L
Sbjct: 168 VKAGCEYAFMECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDGL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K++ AI  ADD      M    N    V +   +       K+   H    + + V G
Sbjct: 228 -SKDAFAITNADDKNG---MIMVQNTKATVKTYSIRTLADFSAKILECHFD-GMELEVNG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+ +      G+F V N L   G  + +G D   VL  L  LH V GR +    +  G  
Sbjct: 283 KEVNV--QFIGKFNVSNLLAVYGAAVMLGKDPEDVLVALSALHSVNGRLQPFH-SPNGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +L  I  +    G +I V G GG+RD+GKRP+M + A+  +D  I+
Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLNGKGHVITVCGAGGNRDKGKRPLMAQEAVKQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R E IRTA  +  K DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDNKQMKKVISIVDRKEGIRTACMLAQKGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQDIK-GVKHHFDDKEVLQEIF 481


>gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
          Length = 493

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/473 (34%), Positives = 250/473 (52%), Gaps = 9/473 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA++G+  DG  FI  AI QGA A++  +       +  I  +
Sbjct: 25  VSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIEQGANAVLAQACEVKAHGTVEIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   + LS  A +LY     +++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 85  VPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        Q    TT + + + K LS L++Q  T+ ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDNLQQAANTTGNAVEIQKTLSSLANQHATYTALEVSSHGLTQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF +   +   AII  DD        +  NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLELFTQ--HQCERAIINVDDEVGHAWATQLSNAIAVSL 262

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +    I    V    +   +    +        PL GEF   N ++A    +++G 
Sbjct: 263 KPNTEFESAIWATDVRYAESGITIQFDGKFGSGQLHAPLIGEFNATNLMLAFATLLSLGK 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D   +LE   +L  V GR E   T  R  ++ VDYAHT ++LE  L+ +R    G++  +
Sbjct: 323 DKQALLETAGQLQPVLGRMELFQTEDR-AKVVVDYAHTPDALEKALQALRVHCEGQLWAI 381

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP +I  +++ G+      I + +
Sbjct: 382 FGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDMLSGLSKPAEAIVQHD 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           R +A+  A+E  + +D++++AGKGHE   I  NGE     D +   ++LGL L
Sbjct: 442 RFKALSYAVENASPKDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGLSL 493


>gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
 gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
          Length = 488

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 246/488 (50%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  GL +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGLRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + + +  +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTKLPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 485

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/507 (31%), Positives = 251/507 (49%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR + +G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIHP-------VKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA AI+        +  A +      + V ++   +   A+  YG       ++
Sbjct: 54  PAAIEKGAIAILCE------ELPAELNEEITYIQVTDSEDAVGKVATAFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+EL
Sbjct: 168 ADEGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK S ++   DD      +    N   +V +   +       KV   H +  +   ++ 
Sbjct: 228 -PKSSFSLTNLDDKNG---LVMTQNTKSKVYTYSLRSLSDFKGKVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G F   N L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVQFIGRFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAI-RSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDNEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIFSLTI 485


>gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
 gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
          Length = 490

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 164/496 (33%), Positives = 261/496 (52%), Gaps = 21/496 (4%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  ELI+ L +  +    + +I+ + SDSR ++ G++FVA+ G   DGH +I  AI +GA
Sbjct: 2   ELKELIHPLEVLEVVGNTDVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIGKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
            AIV     +L D    +  + P+ + V ++   L    S  Y    +N++   VTGT+G
Sbjct: 62  AAIVCEEIPALSDEDIQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++A+ + ++ ++ G     +      I   A     TTP P+ L   ++ +   G  +
Sbjct: 122 KTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVEAGCEY 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++L P  + A
Sbjct: 182 AFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL-PTSAFA 240

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  ADD      +    N   R L+   +       K+   H +    + V G++   + 
Sbjct: 241 LTNADDKAG---LVMLQNTAARKLTYSLRTLADFKGKILESHFEGTEML-VNGRE--VMT 294

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G F  YN L   G  +++G D   VL  L  LH V GRF+ +  + +G    VDYAH
Sbjct: 295 RFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQ-SPKGYTAIVDYAH 353

Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++L  +L +I  +   +GR+I V GCGG+RD+GKRPIM K A  L+D  I+T DNPR 
Sbjct: 354 TPDALTNVLNSIHEVLNGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLILTSDNPRF 413

Query: 423 EDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           E+P++I  +++ G+        +   +R +AI+TA  +  K DV++VAGKGHE    V  
Sbjct: 414 EEPDEIIKDMVAGLNAADMEHTLCITDRAQAIKTATMLARKGDVILVAGKGHEDYQEVK- 472

Query: 478 GEKKMSVDCDIIREIL 493
           G K    D + ++EI 
Sbjct: 473 GVKHHFDDREQLKEIF 488


>gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
 gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
          Length = 489

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 207/499 (41%), Positives = 295/499 (59%), Gaps = 15/499 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M++++L      +L+  ++      +     I  ++SDSR +  G +FVA+ G K DG  
Sbjct: 1   MRMRELEAGTMADLLALIAGHARLERGGSVPIAAITSDSRKVGPGTLFVAVPGTKADGAR 60

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A+A+GA A+++    +  D       + P++   + R+ L+L A+RL+ + P+ I+
Sbjct: 61  FIPDALAKGAAAVLMEPTGAPPDM------DVPLVFSLDVRRSLALAAARLHPRQPQTIV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK+SVA FV+QI    G+ +  +G    I+   +    LT+P P+ L   L  L
Sbjct: 115 AVTGTAGKTSVAEFVRQIWAHLGIPAAYMGTLGLIAPGESSYGGLTSPDPVDLHATLDRL 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G+TH+++EASSHGLDQ RL+G++L AG FTNLGRDH+DYH T +AYF+AK+RLF EL
Sbjct: 175 AGAGITHMALEASSHGLDQRRLEGVRLAAGGFTNLGRDHLDYHPTVEAYFHAKLRLFTEL 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P  +PAI   D  Y    +  A   G    ++G  G    + +V A    Q++  +   
Sbjct: 235 MPDGAPAIAALDAPYGATTLAFARTRGLPTFAIGATGDLK-VTEVVAEGTSQRIRFA--- 290

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              + L PL G FQ  NAL+AA L  A G+     L  L  L  VPGR E +G +     
Sbjct: 291 DRPEILLPLVGRFQADNALLAASLVAAGGVPLDDALSALPHLKGVPGRLERIGHDPARP- 349

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           ++VDYAH   +LE +L  +R  T+GR+I +FGCGGDRD+GKRP+MG IA   AD+ IVTD
Sbjct: 350 VFVDYAHKPEALETVLDTLRAATAGRLIALFGCGGDRDRGKRPLMGAIAAAKADVVIVTD 409

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSEDP  IRAEI+   PG +E G R EAIR  + M+   DVL+VAGKGHET  I+ +
Sbjct: 410 DNPRSEDPSAIRAEILAAAPGALEIGAREEAIRAGVAMMGAGDVLLVAGKGHETGQIIGD 469

Query: 478 GEKKMSVDCDIIREILGLI 496
                  D   +   LG +
Sbjct: 470 -RTYPFSDTAAVLAALGEV 487


>gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 490

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/500 (31%), Positives = 253/500 (50%), Gaps = 26/500 (5%)

Query: 6   LIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  D  EL+  L  F  +  +   I  +  DSR ++ G +F+ I G   DGH F   A+
Sbjct: 1   MVGMDLRELLTHLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAV 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122
            +GA AI+      ++     ++S         T++ +++ A   Y +  +   ++ VTG
Sbjct: 61  EKGAVAILAEKPVDVEVPVVRVKS---------TKRAMAVLADAFYNQPTQKMHLIGVTG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   ++ I +     +  IG     I   + D + TTP  + L K    +  + 
Sbjct: 112 TNGKTTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEEN 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---- 237
           V    +E SSH LD  R+ G       F+NL +DH+DYH T + Y  AK  LF +L    
Sbjct: 172 VEVAMMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAY 231

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
              +   A++ ADDA ++E +K   N    V++ G      I    +   ++     ++ 
Sbjct: 232 NHNRPKFAVLNADDAATEEYIK---NTAATVITYGIDRESDIRATNIQITNSGTTFDLTT 288

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +       L G+F VYN L A   C+  GI  ++++E ++ L  V GRFE V    + 
Sbjct: 289 PTETVRVGMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEVVDAE-QD 347

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK ++      I V+ GCGGDRD+ KRPIM +IA + +  AI+
Sbjct: 348 FTVIVDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAEYSTQAIL 407

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSEDP  I  ++  G+    ++   +R EAIR A+E ++  DV+V+AGKGHET  
Sbjct: 408 TSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVETVHADDVIVIAGKGHETYQ 467

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+         D ++ R+++
Sbjct: 468 IIGKKVFD-FDDREVARKMI 486


>gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
 gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
          Length = 494

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/479 (33%), Positives = 245/479 (51%), Gaps = 11/479 (2%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++     + ++  DSR I+ G IFVAIVG+  DG  FI +A+AQGA+A++  ++      
Sbjct: 20  LELDAIVVEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHG 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +  P++ V      LS  A R+Y      ++ VTGT+GK+++   + Q     G 
Sbjct: 80  LVEWLNAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQ 139

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G T        +    TT S I + + LS L+ +   + ++E SSHGL Q R+  
Sbjct: 140 RSAVMGTTGNGFLDNLKIAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKA 199

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G FTNL RDH+DYH T + Y  AK  LF +   K   A+I  DD   K  +    
Sbjct: 200 LNFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQ--HKCKHAVINVDDEVGKAWVSDLS 257

Query: 262 NAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           NA    LS   GYQ        V       Q++            PL G+F   N LVA 
Sbjct: 258 NAIAVSLSPLTGYQQSVW-ASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAF 316

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +++GID  ++++   +L  V GR E   T ++  ++ VDYAHT ++LE  L  +R  
Sbjct: 317 STLLSLGIDKQILVDTASQLQPVIGRMELFQTPNK-AKVVVDYAHTPDALEKALAALRVH 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
            SG++  +FGCGGDRD GKRP+M   A   AD  I++DDNPRSEDP  I  +++ G+   
Sbjct: 376 CSGQLWAIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEP 435

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                + +R +A++ A+E     D++++AGKGHE   ++ +     S D +   ++LG+
Sbjct: 436 ESAFVEHDRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKDETIHYS-DRESALQLLGI 493


>gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus halodurans C-125]
 gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus halodurans C-125]
          Length = 486

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/475 (31%), Positives = 240/475 (50%), Gaps = 22/475 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I+ +  DSR +  G +F  I G   DGH +  QA++ GA A+V      L       
Sbjct: 21  NPDIHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPLEL------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSS 144
             + P++VV ++R+ ++  A++ YG+      ++ VTGT+GK+++   +++I Q  G  +
Sbjct: 74  --SVPVVVVRDSRRAMAQVATKFYGEPTNDLQLIGVTGTNGKTTITHLIEKIMQDQGKMT 131

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG   T I    ++ + TTP  + L +  + +   GVT   +E SSH L   R+ G  
Sbjct: 132 GLIGTMYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGRVRGCD 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAH 261
                F+NL  DH+DYH T + Y  AK  LF +L    +   A++ ADD  S +  +   
Sbjct: 192 FDVAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDPASADFAEM-- 249

Query: 262 NAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
               +V++ G +       + V          ++   +  +    L G+F VYN L AA 
Sbjct: 250 -TIAQVVTYGIENEADFQAENVRITSTGTTFELAAFEERMELSIHLIGKFSVYNVLAAAA 308

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+    + + LE++  V GRFE V    +   + VDYAHT +SLE +LK +  + 
Sbjct: 309 AAYVSGVPLQEIKKSLEEVKGVAGRFETVKH-DQPFTVIVDYAHTPDSLENVLKTVGELA 367

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            G + VV GCGGDRD+ KRP+M +IA   A+ AI T DNPRSE+P  I  ++  G  G  
Sbjct: 368 KGDVRVVVGCGGDRDKTKRPVMAEIATTFANQAIFTSDNPRSEEPMDILRDMEQGAKGDS 427

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++   +R EAI  AIE+  + D++V+AGKGHET     +       D  + ++ +
Sbjct: 428 YLMIEDRKEAIFKAIELAKEDDIIVIAGKGHETYQQFRDRTID-FDDRIVAQQAI 481


>gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
 gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
          Length = 506

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/504 (32%), Positives = 250/504 (49%), Gaps = 17/504 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+ K    + N + I   +  +  +  + ++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLRELLAK----IANIVEIPSPEGLDVTVTGICTNSHACQPGDLFIGMPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
             AIA GA A ++S   + +     +   +   ++  D+     +  A+  Y    + + 
Sbjct: 57  ESAIASGAVAAIISPQAAAKHPPQELSPETGVCVIAADDMTTVSAQTAAAFYDYPAQKLR 116

Query: 118 -LAVTGTSGKSSVASFVQQICQRSG--LSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKA 173
            + VTGT+GK++    ++ +   S   + +  +G   +    F Q    TTP  + L + 
Sbjct: 117 LIGVTGTNGKTTTTHLIEFLLAHSSSPIPTALLGTLYARWPGFEQTASYTTPFAVQLQQQ 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L      G     +E SSH L Q R+ G       FTNL +DH+DYHQ    YF+AK +L
Sbjct: 177 LQLAVKAGAQMAVMEVSSHALAQGRIQGCPFEVAVFTNLTQDHLDYHQNMDDYFSAKAKL 236

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F     K   AII ADD+Y + ++++         S+         K +       +  +
Sbjct: 237 FSSDYLK-GRAIINADDSYGERLIQQLPTEQVWSYSIQNPSADFWTKDLSYEPTGVRGIM 295

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-N 352
                +  F  PL G++ + N L A G  + +G+D  LV   L +   VPGR E V    
Sbjct: 296 HTPVGEVSFNSPLVGQYNLSNLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQIQP 355

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +L+  R    G++I VFGCGGDRD+ KRP MGKIA  LAD+
Sbjct: 356 EQDISVIVDYAHTPDSLENLLRASRPFIEGKMICVFGCGGDRDRTKRPKMGKIAAQLADV 415

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           A+VT DNPR+E+PE I  +++ GIP  +E     +R  AIRTAI      D +++AGKGH
Sbjct: 416 AVVTSDNPRTENPESILEDVLEGIPQSVEPMVICDRATAIRTAILQAKPGDGVLIAGKGH 475

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I+   EK    D +  R+ L
Sbjct: 476 EDYQILGT-EKIHFDDREQARDAL 498


>gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
 gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
          Length = 487

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/501 (29%), Positives = 256/501 (51%), Gaps = 27/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++     ++IN          +  I+++  DSR I+   +F+AI G   DGH +I
Sbjct: 1   MKLNKILNGIEHKIINGK-------NDLNISDLQYDSRKIKNNDLFIAIKGFNVDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
            +A+ +GA A++V              S    + V+NTRK +++ A   +       +++
Sbjct: 54  KEAVEKGATAVIVEKKLK------KYLSGITYIEVENTRKEMAVLAKNFFANPLADIDLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  +  I +++   +   G    I +        TTP  + L +  S  
Sbjct: 108 GITGTNGKTTTAYLIYNILRKNSFKTAMFGTIKNIIAGEEISATRTTPESLDLYRYFSQA 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + GV ++ +E SSH LD +R+  +      FTNL  +H+DYH+   +Y  AK +LF +L
Sbjct: 168 KTAGVQYIVMEVSSHALDLYRVHQMDFSLAVFTNLSPEHLDYHKDLASYRQAKSKLFSQL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P ++ A+I  DD  S  +++++     +        +   L        +  +    +G
Sbjct: 228 SP-DASAVINLDDKNSGFMLEKSKAHNFK---YSLSNQNADLYCQNYKLKQNSLNYQSQG 283

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +F   L G F +YN+L A      +GI +  ++  LE++  VPGRFE +    +  
Sbjct: 284 LIKRNFQLKLGGIFNIYNSLAAVLSVFLLGISADKIVNSLEEIKGVPGRFELINA-GQDF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           ++ VDYAHT + +E +L+  + IT  R+IV+FGCGGDRD+ KRP+M K+A D AD   +T
Sbjct: 343 QLIVDYAHTPDGMENVLEAAKEITKNRLIVLFGCGGDRDRSKRPVMAKLAEDNADYVFLT 402

Query: 417 DDNPRSEDPEKIRAEIIHG----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +DNPRSEDPE I +EI  G       +    +R +AI  AI    K D++++ G+GHE  
Sbjct: 403 NDNPRSEDPEFILSEIKSGFSNSFSNYEVISDRKKAIVEAINFAKKDDIILILGRGHEKY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            ++ + + ++  D  +  + L
Sbjct: 463 QVIKDKKIEL-DDRKVAYQAL 482


>gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 488

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 244/488 (50%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFRQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M +IA   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQIAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 482

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 248/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       +      E+ I  V+ DSR + AG +F+A+ G + DGH +I
Sbjct: 1   MKLSELLKTIQP-------VQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA A++        D       N   + V ++   +   A+  YG       ++
Sbjct: 54  PAAIEKGAIAVLCE------DMPEEPTPNITYIQVKDSENAVGKVATAFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRHFGYKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADSGCKYAFMEVSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK + ++   DD      +    N   RV +   +       K+   H +  + +    
Sbjct: 227 MPKNAFSLTNLDDKNG---LVMTQNTRSRVYTYSLRSLSDFKGKILESHFEGML-LDFNN 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++        G+F  YN L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 283 RELAVR--FIGKFNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFDSI-RSPKGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHDVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAI+TA  +    DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRKEAIKTAYMLAQPGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D +II+EI+ 
Sbjct: 460 NYQEIK-GVKHHFDDKEIIKEIMN 482


>gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
 gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
          Length = 487

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/498 (30%), Positives = 239/498 (47%), Gaps = 26/498 (5%)

Query: 9   KDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL+N +++  +    +R+I  +  DSR I+ G +F+A  G   DGH FI +A+ +G
Sbjct: 2   KKLKELLNGVNVGKVYGDTDREIGHIHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTRG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A+V                    +   +T + L + A   +        ++ VTGT+G
Sbjct: 62  AVAVVCEQ------LPENRPEEVTYIWTADTSEALGVMAGNYWDNPSRELKLVGVTGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ A+ + ++ + +G  +  +      I         TTP  + + + L  +   G  +
Sbjct: 116 KTTTATLLYELVRLAGEKAGLLSTVCNYIGEEKIPATHTTPDALSIQELLRRMVDAGCRY 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +EASSH + Q R+ G+      F+N+  DH+DYH+T +AY  AK   F+ L P  + A
Sbjct: 176 CFMEASSHAIHQKRIAGLDFDGAIFSNITHDHLDYHKTFKAYIEAKKAFFDRL-PAHAFA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  ADD      +    N      +   +       K    H    + + ++G++     
Sbjct: 235 LTNADDKNG---LVMLQNTRAHRYTYSCRTMADFTAKAIEKHLDGTL-LRLDGEE--VWT 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G+F  YN L        +G     VLE++  L  V GRFE +  ++ G    VDYAH
Sbjct: 289 KFTGDFNAYNLLAVYAAARLLGFPKENVLEYVSLLVPVSGRFETL-ISTEGVMAVVDYAH 347

Query: 365 TSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T +++E +L  I  +     ++I V G GGDRD+ KRP M   A   +D  I+T DNPRS
Sbjct: 348 TPDAVENVLSTICGLKGRDNQVITVVGAGGDRDKTKRPEMADAACRYSDHVILTSDNPRS 407

Query: 423 EDPEKIRAEIIHGIPGFIE-----KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           EDPE+I  +++ G+    +       +R EAIR AI M +K D+++VAGKGHE    V  
Sbjct: 408 EDPEQIIRDMLTGVKEGFQYRVEAITDRKEAIRKAIGMASKGDIILVAGKGHENYQEVK- 466

Query: 478 GEKKMSVDCDIIREILGL 495
           G K    D ++IREI  L
Sbjct: 467 GVKHHFDDKEVIREIFDL 484


>gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 497

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/505 (31%), Positives = 258/505 (51%), Gaps = 26/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E++    I     +E  I  ++++S+ ++  + F AI G   DGH FI
Sbjct: 1   MKL-------LKEILTDEKII-YGNQETVIEGITNNSKKVEKNYAFFAIKGTSVDGHNFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  I +     ++        N  +++ DN RK L+L ++R Y    E +  +
Sbjct: 53  DEAIKNGASVIFIEDEKYVESLKG---KNITVVLTDNGRKSLALASNRFYDNPSEKLKVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           A+TGT+GK++ ++ + Q  + +G     IG  +  +      +  TTP P+   K L  +
Sbjct: 110 AITGTNGKTTTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V  E SSH  DQ+R+   K   G FTNL +DH+DYHQT + YF AK R+FE++
Sbjct: 170 KDKGADVVVAEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQI 229

Query: 238 --LPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
               KE+   I  DD Y + ++    N       ++++ G   +   +        + + 
Sbjct: 230 DEFNKEAIYSINVDDEYGRRILDYLKNHLKVNDDKIITYGKTSEDFKILDYRLSLFETEF 289

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   +         L G F +YN   A    I  G D   + E    L  + GRFE +  
Sbjct: 290 SYKYKDTLSKIKTKLRGVFNIYNLSAAVSFLIKDGFDLKFLEEKALHLKPIKGRFEVI-- 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +G  + +DYAHT ++LE ILK++  I   RII VFG GG+RD+ KRP+MG+ A  L+D
Sbjct: 348 EGQGFIVVIDYAHTPDALENILKSLNEIKENRIIAVFGAGGNRDKTKRPLMGETAEKLSD 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I I+T DNPR+EDP  I  +I+ GI      I   +R +AI  AI +  ++D++++AGKG
Sbjct: 408 IVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKG 467

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   I+ + +     D ++++EI+
Sbjct: 468 HENYQIIGD-KILHFDDAEVVKEII 491


>gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2846]
          Length = 488

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 244/488 (50%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPI-VIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
 gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
          Length = 491

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/476 (33%), Positives = 242/476 (50%), Gaps = 15/476 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ ++++S+ ++ G +F AI G K DGH FI  AI  GA A+V+S     + +S     
Sbjct: 19  KVSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKYP- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   ++ DN RK  +  ++R Y    E +  + VTGT+GK++V + + Q  + +G ++  
Sbjct: 78  DVTFVISDNIRKTQAEVSNRFYDHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTGI 137

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG            +  TTP  I     LS +  +G  +V  E SSH +DQ+R+ G    
Sbjct: 138 IGTIHYKYREKIFASGRTTPDSIEWFYLLSEMRDRGADYVVAEVSSHAVDQYRVYGTVFH 197

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKRAHNA 263
            G FTNL +DH+DYH+  + YF  K   F+ +             DD Y + + +   + 
Sbjct: 198 GGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDFKSC 257

Query: 264 GCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               +S G        +                 G        L GEF +YN   A    
Sbjct: 258 M-NTISYGRDKNAQFRVSDFVVDMKGVSFCYEYNGIKRRVKSDLKGEFNIYNIAAAFSYL 316

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +  G D   +    EKL  + GRFE V    +   +  DYAHT +++E IL ++  I   
Sbjct: 317 LRSGFDIDFLHHATEKLKPIRGRFETV---EKDFLVVNDYAHTPDAIEKILMSLNQIKKN 373

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439
           RII+VFG GGDRD+GKRP+MGKIA +LADI I+T DNPRSEDP +I  +I  G+      
Sbjct: 374 RIIIVFGAGGDRDRGKRPLMGKIAEELADIIILTSDNPRSEDPSRIIEDIKSGMKMEKEI 433

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            E  +R EAI+ AIE+  K D++++AGKGHET  I+ + +     D D+ ++ LG 
Sbjct: 434 YEIIDREEAIKKAIEIARKDDIVLIAGKGHETYQIIGD-KTYYFDDLDVAKKYLGF 488


>gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
          Length = 521

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/495 (32%), Positives = 241/495 (48%), Gaps = 26/495 (5%)

Query: 11  FPELINQLSIFPMQWRER---KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             +L+  +S   ++       ++  V+SDSR +  G +FVA+ G   DGH FI  A+ +G
Sbjct: 15  LEKLLGGISALELRGNRELAGEVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERG 74

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
           A +++        +  + I      + V + R  L+  A   YG   + ++   VTGT+G
Sbjct: 75  AGSVICE------EIPSGIEDGVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNG 128

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  +  +    G+S   IG    T +        TTP    L      +   G   
Sbjct: 129 KTTTSKLITSMLNARGISCGYIGTNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRA 188

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH L   R+ GI+  A  FTNL  +H+D+H+T +AY +AK  LF++L P +  A
Sbjct: 189 VVMEVSSHALMLKRVHGIRFRAAVFTNLTPEHLDFHETMEAYASAKQLLFDQLTP-DGFA 247

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-------GKFIHLKKVCAIHNKQQVTISVEG 297
           ++  DD  +  +  R         S+  +       G     +   A     +V +    
Sbjct: 248 VLNRDDPAAPFMAARVLPEKIYCCSLSARQDTSLACGNSFFAEITGASIASSRVALHFPE 307

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG F V N L AA +   +G+D   +   L  +  V GR E VG +  GG 
Sbjct: 308 TVVSIEVRLPGSFNVMNMLEAASVGFGLGLDPDEICRALSLVSAVEGRMERVGESCSGGM 367

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +VDYAHT ++L  +L  +R +      +IVVFGCGG+RD+ KRP MG+IA +LAD  I+
Sbjct: 368 AFVDYAHTPDALFKVLSTLRDLKDEHSRLIVVFGCGGNRDRSKRPEMGRIASELADEVII 427

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR EDPE I  EI  G+     +    +R EAI  A+ M+ K DVL+VAGKGHE  
Sbjct: 428 TSDNPRDEDPEAILDEIEQGMNRDGRYRRIIDRAEAISVAVSMIGKGDVLLVAGKGHEKY 487

Query: 473 HIVTNGEKKMSVDCD 487
             + +G K    D +
Sbjct: 488 QEI-SGRKAFFSDRE 501


>gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
 gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
          Length = 486

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 168/508 (33%), Positives = 260/508 (51%), Gaps = 38/508 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+        N      +   ++ I  V  DSR ++ G +FVAI G + +GH +I
Sbjct: 1   MNLKTLLK-------NITIKTSLYVEDKDITSVCFDSRKVEKGSMFVAITGTQSNGHEYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAI  GA AIV                +   +VV N+   L+L A+  YG   E +  +
Sbjct: 54  DQAIRSGANAIVCEQ------LPQQPLPDVSYIVVPNSHSALALIAANFYGNPSEKLTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKAL 174
            VTGT+GK+++A+ + Q+ +++G  +   G  ST++ +  D R     TTP P+ L   L
Sbjct: 108 GVTGTNGKTTIATLLYQLFRKAGQKA---GLLSTVAVYVDDQRFEATHTTPDPLQLNHYL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  QGV +  +E SSHG+DQHR +G++   G FTNL RDH+DYH+T  AY + K R F
Sbjct: 165 HLMVEQGVKYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L P  + A++  DD     +++    A  +  ++     +   K          + + 
Sbjct: 225 DAL-PATAFALVNNDDKNGAFMLQN-TKAQKKTYALKTHADY---KAYIIESRFDGLLLR 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +     +    L GEF  YN L        +GID    L  +  +  V GRF++   ++ 
Sbjct: 280 IN--QHEVWTKLIGEFNAYNLLAVYATATLLGIDELETLTLISAIEPVAGRFQY-AVSAT 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D 
Sbjct: 337 GVITIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDN 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR+E+PE I +E+  G+            +R +AI++  +   K D++++AGK
Sbjct: 397 VILTSDNPRNEEPETILSEMEQGVQPQHFYKVQNITDRRQAIQSVCKNAQKGDIILIAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGL 495
           GHET   +  G +    D +I+RE L L
Sbjct: 457 GHETYQEIK-GVRHHFDDFEIVREYLEL 483


>gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
 gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
          Length = 493

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/471 (34%), Positives = 251/471 (53%), Gaps = 9/471 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA++G+  DG  FI  AI QGA A +  +       +  I  +
Sbjct: 25  VSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   + LS  A +LY     +++ VTGT+GK+++   + Q  +     +  +G 
Sbjct: 85  VPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDDKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  Q    TT + + + K LS L++Q  T+ ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF +   +   AII  DD    +   +  NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLGLFTQ--HQCKRAIINVDDEVGHQWASQLSNAIAISL 262

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +    I   +V    +   +    +    +   PL GEF   N ++A    +++GI
Sbjct: 263 KPNTEFESAIWATEVSYAESGITIKFDGKFGSGELHAPLIGEFNATNLMLAFATLLSLGI 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   +LE   +L  V GR E   T  R  ++ VDYAHT ++LE  L+ +R    G++  +
Sbjct: 323 EKQALLETAGQLQPVLGRMELFQTEDR-AKVVVDYAHTPDALEKALQALRVHCEGQLWAI 381

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP +I  +++ G+      I + +
Sbjct: 382 FGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDMLAGLSKPAEAIVQHD 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           R +A+  AIE  +  D++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 442 RFKALSYAIENASPNDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
 gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
          Length = 491

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/504 (30%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAILADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHDREKYAVLNNDDAVTPEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    V++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSE+P  I  +++ G  G  +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQII-GKDVHHFDDREVAKEAI 483


>gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
 gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
          Length = 488

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 244/488 (50%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
 gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
          Length = 488

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 243/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++  TGT+GK++++  
Sbjct: 64  TELSSEHLTVDFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGATGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +L+     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLATFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 499

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 149/508 (29%), Positives = 237/508 (46%), Gaps = 37/508 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLF 59
           DL  K+   L+  L    +     KI  +  DSR I  G +F+ + G   DG     H F
Sbjct: 7   DLKLKELANLL--LVKETIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLEDRHQF 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  A+  GA A++V    +++          P ++V + R  +++ AS  YG       +
Sbjct: 63  VEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + L  
Sbjct: 114 IGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQM 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  LF  
Sbjct: 174 MKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFAR 233

Query: 237 LLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ 290
           L        +  A++ ADD   +   K        V++ G + G  +  K +       +
Sbjct: 234 LGNNLSTIDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNGADVQAKNINLSPKGIR 290

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E + 
Sbjct: 291 FLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIID 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N +   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   +
Sbjct: 351 EN-QDFLVIVDYAHTLDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYS 409

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D   +T DNP SEDP+ I  +I  G        +  + +R  AI  AI M +  D++++A
Sbjct: 410 DFVFITSDNPCSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHET  I+ +       D +  R+ +
Sbjct: 470 GKGHETYQILKDSTIH-FDDKEKARQAI 496


>gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
 gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
          Length = 490

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/485 (33%), Positives = 264/485 (54%), Gaps = 23/485 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            + +E KI  +  DSR I+  ++F A+ G+  DGH FI +AI  GA+ I+V     +  +
Sbjct: 14  HKGKEFKIEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMIIVEENIEVSKY 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
                 +   + V++ RK L + AS  YG   + I  + +TGT+GK++ +  ++ I +  
Sbjct: 74  DKY--EDISFVFVEDVRKHLGIIASNYYGYPQDKIKIIGITGTNGKTTSSYILENILE-- 129

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              + +IG T   I     +   TTP  + L K ++    +GV +  +E SSH L+  R+
Sbjct: 130 --KTARIGTTGNRILDEEFETVNTTPESLELVKLINESVKRGVEYFIMEVSSHALEIGRV 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + +K  +  FTNL +DH+D+H+T + YFNAK ++F  +L       +  DD Y K +++ 
Sbjct: 188 NMLKFDSAIFTNLTQDHLDFHKTMENYFNAKRKIFS-MLRNSGTGTVNIDDGYGKRIIEE 246

Query: 260 ---AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A N   + +S+  +   ++ +     ++  ++ I    K++     L GE+ +YN L
Sbjct: 247 KKDAENVCYKTVSIKDKNADLYGEIAEYTNDGMKIKIVHNDKEYFANINLVGEYNLYNVL 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             A   +A+GI+   ++E L+K+  VPGRFE V  N++  RI VDYAHT + L  I K +
Sbjct: 307 GCAASALALGIEIEKIIEKLQKMPSVPGRFETVK-NNKNARIVVDYAHTDDGLTNIGKTL 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R IT  R+I VFG GGDRD  KRP M K A + +D  I+T DNPR+E+P  I  E+  G+
Sbjct: 366 RKITDNRVITVFGAGGDRDNKKRPKMAKAAAEFSDFIILTSDNPRTENPANILKEVEAGL 425

Query: 437 -------PGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
                    +    +R +AI+ A+ EM  + D L++AGKGHET  I+   EK+   D +I
Sbjct: 426 IEINFPKDKYTVIEDREQAIKYAVQEMTGEGDSLLIAGKGHETYQIIGK-EKRHFDDREI 484

Query: 489 IREIL 493
            ++ L
Sbjct: 485 AKKYL 489


>gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 488

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 243/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPI-VIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
 gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
          Length = 485

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/493 (32%), Positives = 246/493 (49%), Gaps = 26/493 (5%)

Query: 14  LINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+  +S+  ++    R I  ++ DSR +Q G +FVA+ G + DGH +I +AI +GA A+V
Sbjct: 8   LLKSVSVVRVEGDTARNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAIEKGAVAVV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
             +   +Q            + V ++   +   ++  YG     +  + VTGT+GK+++A
Sbjct: 68  CEAWPEVQ------AEGVTYVQVKDSESAVGRLSTVFYGDPTSKLQLVGVTGTNGKTTIA 121

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           + +  + +  G            I   A     TTP PI L + L  ++ +G  +  +E 
Sbjct: 122 TLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFMEV 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH + QHR+ G+K   G FTNL RDH+DYH+T + Y +AK   F+ L PK + A+   D
Sbjct: 182 SSHAVAQHRIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGL-PKGAFAVTNVD 240

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D      M    N    V +   +       KV      + + + V GK+     P  G 
Sbjct: 241 DRNG---MIMVQNTKAVVNTYSLRAVADFKAKVLEESF-EGMCLDVNGKEVSV--PFIGR 294

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L      + +G  +  VL  L  L  V GRFE +  +  G    VDYAHT ++L
Sbjct: 295 FNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFETI-RSREGVTAIVDYAHTPDAL 353

Query: 370 EMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +L  +  I    G +I V G GG+RD+GKRPIM + A+  +D  I+T DNPR E+P++
Sbjct: 354 VNVLSTVNEILKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVIITSDNPRFEEPQE 413

Query: 428 IRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           I  +++ G     +   I   +R EAIRTA  M    DV++VAGKGHE    V  G K  
Sbjct: 414 IINDMLAGLDKEQMRKVISIVDRKEAIRTACMMARPGDVVLVAGKGHEDYQEVK-GVKHH 472

Query: 483 SVDCDIIREILGL 495
             D ++I+ + G+
Sbjct: 473 FDDHEVIKGVFGI 485


>gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
 gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
          Length = 500

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 147/509 (28%), Positives = 239/509 (46%), Gaps = 37/509 (7%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HL 58
           +DL  K+  + +  L    +     +I  +  DSR I +G +F+ + G   DG     H 
Sbjct: 6   RDLKLKELADSL--LIKDTIGNMNVEITGLEMDSRKITSGNLFICVSGI--DGFLEDRHQ 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--EN 116
           F+  A+  GA A++V    ++Q          P ++V + R  +++ AS  YG       
Sbjct: 62  FVEDAVKNGAVALIVERDVNIQ---------IPKIIVKDARYAMAIIASHFYGYPSNKIK 112

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ +TGT+GK++ +  +++I    G  +  +G     +        + T  P  L + L 
Sbjct: 113 LIGITGTNGKTTTSYLLEKILTDHGFQTGLMGNNGVKVGPKWYPTDINTQEPPILQRNLQ 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            + +    +  +E +S GL   R+ G       FTNL +DH+DYH T + Y   K  LF 
Sbjct: 173 MMKNHNTDYCVMEVTSQGLHMERVKGCNFKTAVFTNLTQDHLDYHGTFEEYKQVKGLLFS 232

Query: 236 ELLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQ 289
            L        +  AI+ ADD   +   K        V++ G + G  +  K +       
Sbjct: 233 RLGNDFSTTDKKIAILNADDPSVEYFKK---VTSAEVITYGIHNGADVQAKNITLSPKGI 289

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q  +S    + +    L G F VYNAL A  + +   I    + + L  +  + GR E +
Sbjct: 290 QFLVSTFNGEKEINLNLVGRFNVYNALAAITVALVEDIPLTNISDSLSHVKSIEGRMEII 349

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N +   + VDYAHT ++LE +L  I   + G+II VFGCGGDRD  KR IMG+IA   
Sbjct: 350 DEN-QDFLVIVDYAHTPDALENVLSTISEFSKGKIITVFGCGGDRDTKKRSIMGEIAGSY 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +D   +T DNPRSEDP+ I  +I  G+       +  + +R  AI  AI M +  D++++
Sbjct: 409 SDFVYITSDNPRSEDPQAIMKDIEKGLSQNNNLNYKVEVDRELAINHAINMASSNDIVLI 468

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHET  I+ +       + +  R+ +
Sbjct: 469 AGKGHETYQILKDSTIH-FDNKEKARQAI 496


>gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
 gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
          Length = 491

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 250/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHNF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  ++  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNRKKYAVLNSDDPVTEEYMR---STAATVVTYGIDVSSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  D    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +   +G +  + GCGGDRD+ KRP+M  +A++ A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  ++I    G  +    +R EAIR AI     +D++++AGKGH
Sbjct: 401 QAIYTSDNPRSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQIIGK-EVHHFDDREVAKEAI 483


>gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Bacteroides fragilis NCTC 9343]
          Length = 485

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/507 (30%), Positives = 254/507 (50%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR +++G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+ +GA AI+        +  A +      + V ++   +   A+  YG     +  +
Sbjct: 54  PAAVEKGATAILCE------ELPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G++   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK S ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 227 MPKNSFSLTNLDDKNG---LVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485


>gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
 gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
          Length = 479

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/502 (31%), Positives = 236/502 (47%), Gaps = 34/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+ KD          +   + +  I +VS DSR +    +F  I G + DGH F 
Sbjct: 1   MKLSELL-KDIE--------YTGTYVDCDITDVSCDSRKLTPNSVFACIKGVQSDGHDFA 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+A+G   I+      L +           L+V +T    +   +  YG   + +  +
Sbjct: 52  QAALAKGVPCILCERDLGLNN----------QLLVQDTHFAFAKMCANFYGNPAKKLKLV 101

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V S ++++    G     IG     I         TTP      K LS +
Sbjct: 102 GVTGTNGKTTVTSIIKRVLAGLGCKVGLIGTIQNEIGDQVIPTTKTTPDAGEFQKILSDM 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH LDQ RL        +FTNL +DH+DYH+  + YF AK +LF   
Sbjct: 162 VEAGCEYVIIEVSSHALDQCRLADSHFEVAAFTNLTQDHLDYHKDMEDYFQAKAKLF--- 218

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +I  DD+Y + +   AH    R  S          + +       +  +    
Sbjct: 219 -HMCDKGVICIDDSYGRRLALEAH-CSLRTFSAEDASASCFARNIEMDITGVRFEMVTGA 276

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F  PG F V NAL AA +C+ +GI    V+  +     + GR E + T  R   
Sbjct: 277 VISRMQFGTPGLFSVRNALCAALVCLDLGISLDSVVGGINACGHIKGRSEIIPT-GRDFT 335

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DYAHT + L  IL +I      GR + VFGCGGDRD+ KRPIMG++    AD+ IVT
Sbjct: 336 VLCDYAHTPDGLVNILSSINEYKGKGRAVAVFGCGGDRDRKKRPIMGEVVARNADLLIVT 395

Query: 417 DDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDP+ I  EI+ GI      F+   NR EAI  A++     D++++AGKGHE  
Sbjct: 396 SDNPRTEDPDAIIDEIVAGIEPTGTPFLRITNRREAIHYAVQHAQPGDIILLAGKGHEDY 455

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            ++   +K    + +++ E L 
Sbjct: 456 QVLGT-QKVHFDEREVVAEALA 476


>gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
 gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
          Length = 486

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 251/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG     ++  
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +      I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+  ADD      +    N   + L+   +       K+   H  +   + + G
Sbjct: 228 -PAGTFALTNADDKSG---LVMLQNTKAKKLTYSLRTLADFKGKILESHF-EGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +    G F  YN L   G  +++G D   VL  L  L  V GRFE +  +  G  
Sbjct: 283 RE--VMVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQ-SPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A  L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D + +REI 
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIF 481


>gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7425]
 gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425]
          Length = 501

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/500 (30%), Positives = 245/500 (49%), Gaps = 14/500 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+     E+     +      +R+I  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLRELLTAVQSEITLIGDLPCHPALDREITSLSTNSWACQPGSLFIGMPGTRVDGGNFW 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI+         +A           +   ++ V +  +     A+ LY    +   ++
Sbjct: 61  ASAISA-----GAVAALVSAAVPLPDPAEACVIPVQDVSRACGAIAAALYNYPTQRLKLV 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ +  ++G  +  +G   T    + +    TTP  + L   L+  
Sbjct: 116 GVTGTNGKTTTTHLIEYLLNQTGQPTALLGTLYTRWPGYQETAVHTTPFAVELQGQLASA 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH L Q R+ G     G FTNL +DH+D+H+  + YF+AK  LF   
Sbjct: 176 VKAGCPFAVMEVSSHALAQGRVQGCTFQVGVFTNLTQDHLDFHKDLEDYFSAKALLFSP- 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 AII  DD Y + ++++   A     S        + + +  + N  +  +    
Sbjct: 235 GYLSGKAIINQDDPYGQRLIQQLEPAQVWTYSTSDSTADFYTRDLNYLANGVEGILHTPE 294

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGG 356
            +  F  PL G+F V N L A G  +++G++   +   L +   VPGR + V    S+  
Sbjct: 295 GEIAFTSPLVGQFNVANLLAAVGAALSLGVNLTTIAAALPQFSGVPGRMQQVQVAPSQDI 354

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +L+  R     R+I VFGCGGDRD+ KRP MG IA  LAD  +VT
Sbjct: 355 SVIVDYAHTPDSLENMLRAARPFVKHRMICVFGCGGDRDRTKRPKMGGIAAQLADQVVVT 414

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I  +I+ G+P     I +G+R +AI+TAI      D +++AGKGHE   
Sbjct: 415 SDNPRTEDPQRILEDILTGVPDGVNLIVEGDRRKAIQTAILNAQPGDSVLIAGKGHEDYQ 474

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  +  L
Sbjct: 475 ILGT-EKVHFDDREEAQAAL 493


>gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
 gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
          Length = 493

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/505 (31%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+       +NQ            I+ ++ DSR +  G +FVAI G+  DG  FI
Sbjct: 2   MQLSELLLSWCE--LNQS---------VAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118
             AI QGA A++  +       +  + +N  ++ +D+    LS  A   Y   K    ++
Sbjct: 51  SSAIEQGAVAVIADADEDNIAGTVKVINNAIVVYIDSLYTQLSAIAGAFYQADKRCMQLV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++  + Q        +  +G T   + S  +    TT SPI + + L+ L
Sbjct: 111 GITGTNGKTTISQIIAQWTTLLDQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTEL 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G    ++E SSHGL Q R++ +   A  FTNL RDH+DYH   + Y  AK  LF   
Sbjct: 171 ENIGAKLTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMENYAEAKKLLFTSH 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTI 293
            PK S   I ADD    + +K   +A    L+      + GK +    V       Q+++
Sbjct: 231 RPKHSI--INADDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIQLSV 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S +  +  F  PL G F   N LVA    +++G D   + +   +L+ V GR E   T  
Sbjct: 289 SSDWGNVAFSVPLIGAFNASNILVAFATLLSLGYDIQALAQTASQLNAVIGRMELF-TAD 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              ++ VDYAHT ++L+  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD+ 
Sbjct: 348 NKAKVVVDYAHTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I++DDNPRSE+P  I  +++ G+          +R EA + A+   N+ D++++AGKGHE
Sbjct: 408 ILSDDNPRSEEPSLITNDMLAGLKNSESAHVIHDRFEACQFALSQANENDIILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
              ++ +       D +  + +LGL
Sbjct: 468 DYQVLADKTV-YYSDRETAQTLLGL 491


>gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Bacteroides fragilis 638R]
          Length = 485

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/507 (30%), Positives = 254/507 (50%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR +++G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+ +GA AI+        +  A +      + V ++   +   A+  YG     +  +
Sbjct: 54  PAAVEKGATAILCE------ELPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK S ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 227 MPKNSFSLTNLDDKNG---LVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485


>gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
 gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
          Length = 491

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 250/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHNF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  ++  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNRKKYAVLNSDDPVTEEYMR---STAATVVTYGIDVSSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  D    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +   +G +  + GCGGDRD+ KRP+M  +A++ A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  ++I    G  +    +R EAIR AI     +D++++AGKGH
Sbjct: 401 QAIYTSDNPRSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQIIGK-EVHHFDDREVAKEAI 483


>gi|67922594|ref|ZP_00516100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
 gi|67855522|gb|EAM50775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
          Length = 501

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/499 (32%), Positives = 248/499 (49%), Gaps = 16/499 (3%)

Query: 6   LIYKDFPELINQLSIFP----MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L  K    L+N LS  P        ER++  +S++S   Q G IF+ + G + DG  F  
Sbjct: 2   LTSKKLQYLLNNLSNIPSLPNHSALEREVKGISTNSHSCQLGDIFIGMPGTRVDGGEFWQ 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+  GA A ++S   + +      + +  +++V++     +  A+  Y    +   ++ 
Sbjct: 62  SAMEVGAVAAIISPQAAQKFPP---KDDDCVIIVEDIITVAAQIAAAFYDYPAQQLKMVG 118

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT+GK++    V+    +    +  IG   T    F +    TTP    L + L+   
Sbjct: 119 ITGTNGKTTTTHLVEYFLNQCQKPTALIGTLYTRWPGFERTAVHTTPFAPELQEQLAEAV 178

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +    +  +E SSH L Q R+         FTNL +DH+D+H+  + YF AK  LF    
Sbjct: 179 AANNEYCVMEVSSHALVQGRVKQCPFQVSVFTNLTQDHLDFHKDMEDYFAAKRLLFTPDY 238

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +E  AI+  DD Y K ++           SV       +   +    N    T++    
Sbjct: 239 LQEK-AIVNLDDPYGKRLIDSFQTEQVWTYSVEDTKADFYTSNLTYQANGVTGTLTTPFG 297

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGR 357
           + +F  PL G+F + N L A    + +G+D   V+E L     VPGR E V  N  +   
Sbjct: 298 NIEFTSPLVGQFNLSNVLAAVATVLYLGLDVREVVEKLPHFLGVPGRMERVQINDKQDIS 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP+MG+ +  LAD+++VT 
Sbjct: 358 VIVDYAHTPDSLENLLKAARPFIKGKMICVFGCGGDRDRTKRPLMGQASAQLADVSVVTS 417

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP++I  +++ GIP  IE     +R +AI TAI   N  D +++AGKGHE   I
Sbjct: 418 DNPRTEDPQRILEDVLTGIPETIEPLVISDRAKAINTAILQANPGDGVLIAGKGHEDYQI 477

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +   EK    D +  R+ L
Sbjct: 478 LGT-EKIHFDDREEARKAL 495


>gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
 gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
          Length = 509

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 165/500 (33%), Positives = 249/500 (49%), Gaps = 17/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+ K     +        Q  E +I  ++++S   Q G +F+ + G + DG  F 
Sbjct: 11  MKLRELLAKVSSISLTN----NYQALETEIKGLATNSHACQTGDLFLGMPGTRVDGGDFW 66

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AIA GA   +VS + + +        N  ++ V +  +     A+  Y    + +  +
Sbjct: 67  KSAIANGAVGAIVSVSAATKH----PAKNECVIPVADMSQTCPEIAAAFYDYPGQKMKMV 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ I   + L +   G        F +    TT  P+ L   L+  
Sbjct: 123 GITGTNGKTTTTHLVEFILNNAQLPTALFGTLYMRWPGFQKTAAYTTSFPVELQNQLAQA 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  +  +E SSH LDQ R+ G       FTNL +DH+DYH+    YF AK RLF   
Sbjct: 183 LAAGSKYGIMEVSSHSLDQKRVWGCTYEVAVFTNLTQDHLDYHKDMDDYFEAKARLFSSD 242

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   AI+ ADD Y ++++ R  +      S       +    +       +  +    
Sbjct: 243 YLK-GRAIVNADDPYGQKLIARLESEKVWSYSTSDTSTDLWASDLEYKPTGVKGMLHTPK 301

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGG 356
            +  F  PL G++ + N L A G  + +G+D ++V+  L     VPGR E V  T  +  
Sbjct: 302 GEMIFSLPLVGQYNLSNMLAAVGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDV 361

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA +L+D+A+V+
Sbjct: 362 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELSDLAVVS 421

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDPE+I  +I+ GI      +   +R EAIRTAI      D +++AGKGHE   
Sbjct: 422 SDNPRTEDPERILQDILEGISPEVKPLVISDRAEAIRTAIMEAQSGDGVLIAGKGHEDYQ 481

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 482 ILGT-EKIHFDDREQARNTL 500


>gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
 gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
          Length = 486

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 251/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG     ++  
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +      I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+  ADD      +    N   + L+   +       K+   H  +   + + G
Sbjct: 228 -PAGTFALTNADDKSG---LVMLQNTKAKKLTYSLRTLADFKGKILESHF-EGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +    G F  YN L   G  +++G D   VL  L  L  V GRFE +  +  G  
Sbjct: 283 RE--VMVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQ-SPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A  L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERVLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D + +REI 
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIF 481


>gi|221638508|ref|YP_002524770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159289|gb|ACM00269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
          Length = 495

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 185/478 (38%), Positives = 267/478 (55%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   ++V ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALAGSGAALVVAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A     RV+  G+     + L         Q +  S +G+      PL G FQ
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRI+VVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V   +     D +  
Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484


>gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 501

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/502 (32%), Positives = 244/502 (48%), Gaps = 15/502 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+      + N + +      + +I  + ++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLHDLL----RAIPNVVEMPNHPALDAQITGICTNSHACQPGNLFIGMPGTRVDGGDFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSAT-IRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
             AIA GA A ++S   + +        +  P ++           A+  +  +P   L 
Sbjct: 57  QSAIASGAVAALISPQAAQKHPPQPKPDAEPPCIICATDMTVACAQAAAAFYNYPTRQLQ 116

Query: 120 VTGTSGKSSVA---SFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALS 175
           + G +G +        ++ I  ++   +   G   +    F+Q    TTP P+ L + L 
Sbjct: 117 LVGVTGTNGKTTTTHLIEFILTQAQRPTALFGTLYARWQGFSQTAVHTTPFPVELQQQLH 176

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              + G     +E SSH L Q R+ G +     FTNL +DH+D+H+  + YF AK  LF 
Sbjct: 177 SAVAAGCELGVMEVSSHALAQGRVLGCEFDVAVFTNLTQDHLDFHRDMEDYFAAKALLFN 236

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   AII ADD Y K ++++         SV      ++   +       + T+  
Sbjct: 237 SDYLH-GKAIINADDPYGKRLIEKVGRDRTWSYSVQNPSADLYTSNLTYTLIGVKGTLHT 295

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SR 354
              D  F  PL G++ + N L A G  + +G+D   V+  L +   VPGR E V     +
Sbjct: 296 PVGDVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFPGVPGRMERVQLKPDQ 355

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKI  +LAD+A+
Sbjct: 356 DISVIVDYAHTPDSLENLLKAARPFIQGRMICVFGCGGDRDRTKRPKMGKIGAELADVAV 415

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+EDPE+I  +I+ GIP  +E     +R  AIRTAI      D +++AGKGHE 
Sbjct: 416 VTSDNPRTEDPERIIQDILEGIPATVEPIVMSDRATAIRTAILDAKPGDGVLIAGKGHED 475

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   EK    D +  RE L
Sbjct: 476 YQILGT-EKIHFDDREQAREAL 496


>gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
 gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
          Length = 488

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 243/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK  LF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKGLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_7]
          Length = 486

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 252/503 (50%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG     ++  
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +      I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+  ADD      +    N   + L+   +       K+   H  +   + + G
Sbjct: 228 -PAGTFALTNADDKSG---LVMLQNTKAKKLTYSLRTLADFKGKILESHF-EGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +    G F  YN L   G  +++G D   VL  L  L  V GRFE +  +  G  
Sbjct: 283 RE--VMVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQ-SPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A+ L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D + +REI 
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIF 481


>gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
 gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
          Length = 485

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/507 (30%), Positives = 253/507 (49%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR +++G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+ +GA AI+        +    +      + V ++   +   A+  YG     +  +
Sbjct: 54  PAAVEKGATAILCE------ELPVELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK S ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 227 MPKNSFSLTNLDDKNG---LVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485


>gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
 gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
          Length = 492

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/502 (32%), Positives = 233/502 (46%), Gaps = 25/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+     N P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDDG---KFTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDSLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGTLEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E+  R       +   GY   +   I +    A  +  +     
Sbjct: 230 HGLQHAIINVDDEYGAELAGRLKKDCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VLE L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +        +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVSNPERVEVDRAVAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             V  G K    D +I  + L 
Sbjct: 469 QDV-QGVKHHFSDFEIAEKALA 489


>gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
 gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
          Length = 494

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/478 (33%), Positives = 244/478 (51%), Gaps = 9/478 (1%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++     + ++  DSR I+ G IFVAIVG+  DG  FI +A+AQGA+A+V  ++      
Sbjct: 20  LELDAIAVEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHG 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +  P++ V      LS  A R+Y      ++ VTGT+GK+++   + Q     G 
Sbjct: 80  LVEWLNAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQ 139

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G T        +    TT S I + + LS L+ +   + ++E SSHGL Q R+  
Sbjct: 140 RSAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKA 199

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G FTNL RDH+DYH T + Y  AK RLF +   K   A+I  DD   K  M    
Sbjct: 200 LNFEVGVFTNLSRDHLDYHGTMEEYALAKKRLFTQ--HKCKHAVINVDDEVGKAWMADLS 257

Query: 262 NAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           NA     L +    + +    V       +++        D   PL G+F   N LVA  
Sbjct: 258 NAIAVSLLPLSDYQQSVWASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFA 317

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +++GID   +++   +L  V GR E     S+  ++ VDYAHT ++LE  L  +R   
Sbjct: 318 TLLSLGIDKQTLVDTASQLQPVIGRMELFQVPSK-AKVVVDYAHTPDALEKALAALRVHC 376

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
           SG++  +FGCGGDRD GKRP+M   A   AD  I++DDNPRSEDP  I  +++ G+    
Sbjct: 377 SGKLWAIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPE 436

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
               + +R +A++ A+E     D++++AGKGHE   ++ +     S D +   ++LG+
Sbjct: 437 SAFVEHDRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKDETIHYS-DRESALQLLGI 493


>gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 489

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 167/500 (33%), Positives = 255/500 (51%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         E+   L  +    + E+ +  ++ DSR ++ G+IFVAI G K DGH F
Sbjct: 1   MKLS--------EICAVLEKYKCNSFTEKVVLGLTHDSRKVKEGYIFVAIKGYKSDGHDF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  AI +GA A+V                N P +VV N R+ LSL +   YG     +  
Sbjct: 53  ISMAIEKGAIAVVAEKGVD-------YVINVPQIVVPNARRALSLLSEYFYGYPSSKMTI 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++ + F + I + SG  +  IG     + S       TTP  + +   LS 
Sbjct: 106 VGITGTNGKTTTSFFTKSIIESSGNKAGLIGTIYYQLGSRIIPANETTPESVDIQSHLSD 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + +  + +  +EASSH L QHRLDG+   +  FTNL  +H+DYH+  + Y   K++L   
Sbjct: 166 MLNNNIRYAVIEASSHALSQHRLDGVHFRSAVFTNLSAEHLDYHENIKNYREEKIKLMRG 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L  + + A++ AD   SK   K           +      +  + +    N  +  +   
Sbjct: 226 L-DENASAVLNADHTSSKYFAKSTVAQIVW-YGIKDTSAHVRAEIINMGVNGTRFLLISP 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L G   VYNAL AA     +G D  ++ + LE L+ VPGR E +    +  
Sbjct: 284 WGKEVIHLKLTGNHNVYNALAAATTGFCLGFDMEIIRKGLESLNNVPGRLEKLD-YGQDF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT ++L+++L+ +R I + RII+VFGCGGDRD+GKR  MG IA   +D+  +T
Sbjct: 343 HVLIDYAHTHDALQVVLETLRGIAARRIILVFGCGGDRDKGKRAKMGHIAEKYSDLFWIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +DNPRSEDP  I  EI  GI     +  + +R  AI  A+    K DV+V+AGKGHE   
Sbjct: 403 NDNPRSEDPLNIIREIQRGIKRDSCYKVQLDRKVAIEEALLEAKKGDVVVIAGKGHERCQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       DC++++++L
Sbjct: 463 ILKDKSIP-FDDCEVVKQVL 481


>gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
 gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
          Length = 485

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 169/506 (33%), Positives = 262/506 (51%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+ +     +  LSI      +  I  V+ DSR I  G IFVAI G + DGH FI
Sbjct: 1   MKLTDLLSE-----VKTLSIT--GDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA+AI+      L+D  + ++     + V++T K +   A+  YG   + +  +
Sbjct: 54  NKAIESGAKAIL------LEDVPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + +  G     +      I + A     TTP PI L + LS +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRAFGYKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLLSKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + QHR+ G+    G FTNL RDH+DYH+T + Y NAK   F+ L
Sbjct: 168 VEAGCEYAFMECSSHAIHQHRIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAKKMFFDSL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK++ AI  ADD      M    N    + +   Q +    +      + + + + ++G
Sbjct: 228 -PKKAFAITNADDKNG---MIMVQNCKANIKTYSIQ-RMADFRARIIECHFEGMYLDIDG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+        G+F V N L   G  + +G     +L  L  L  V GR E +  +  G  
Sbjct: 283 KEVGV--QFIGKFNVSNLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPI-RSPEGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++L  +L  I  +    +G+II V G GG+RD+GKRP+M + A+  +D+ I
Sbjct: 340 AIVDYAHTPDALSNVLSAIHDVMEGKTGQIITVCGAGGNRDKGKRPLMAQEAVKHSDVVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EA+RTA ++  K DV++VAGKGH
Sbjct: 400 LTSDNPRFEDPQDIINDMVAGLDETQLNKVLTIVDRREAMRTAAKLAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    +  G K    D +++R+I  +
Sbjct: 460 EDYQEIK-GVKHHFDDHEVLRDIFNI 484


>gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
 gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
          Length = 488

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 242/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y     N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDASAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
 gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
          Length = 486

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 251/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG     ++  
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +      I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+  ADD      +    N   + L+   +       K+   H  +   + + G
Sbjct: 228 -PAGTFALTNADDKSG---LVMLQNTKAKKLTYSLRTLADFKGKILESHF-EGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +    G F  YN L   G  +++G D   VL  L  L  V GRFE +  +  G  
Sbjct: 283 RE--VMVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQ-SPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A  L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D + +REI 
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIF 481


>gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus
           influenzae F3031]
 gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae F3031]
          Length = 488

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 243/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYHQLSRHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGAGFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPI-VIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 537

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 164/489 (33%), Positives = 255/489 (52%), Gaps = 40/489 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  I  V   S+ ++   IFVA+ G++ DGH F+  AI +GA AIVV           
Sbjct: 48  YLDPDIASVHYKSQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVVQKKTV------ 101

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
               ++ I+ V+NTRK L   A+  YG   E +  + +TGT+GK++ A  ++ I Q +G 
Sbjct: 102 ---KDSIIIEVENTRKALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAYLIESILQTAGF 158

Query: 143 SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  IG      S     + +TTP  + L K LS +   GVTHV +E SSH +D  R++G
Sbjct: 159 KTGVIGTINCRYSGKTFPSPVTTPESLDLQKILSEMVIDGVTHVVMEVSSHAIDLFRIEG 218

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-----PKESPAIIYADDAYSKEV 256
               +  FTNL +DH+DYH+  ++Y+  K +LF E L      +++  +I  DD   K +
Sbjct: 219 CFFDSAVFTNLTQDHLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTVINCDDERGKAL 278

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                    +  S       I+           +  IS     F     L G+  + N +
Sbjct: 279 SGILSTKCIKTGS--DSECDIYASNSRIDTLGIKALISTPESTFSIESELVGKHNIENIM 336

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AAG+   +GI S ++ + ++ L V+PGR E +  N  G  +YVDYAHT ++L+ +L ++
Sbjct: 337 SAAGVASGLGISSEIIKKGIKSLSVIPGRLEKIN-NEAGISVYVDYAHTPDALKNVLLSL 395

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R I  GR+I VFGCGGDRD+ KRP+MG++A DL+D A++T DNPR+EDP +I  +II GI
Sbjct: 396 RPIVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAVITSDNPRTEDPTEIINQIITGI 455

Query: 437 -------------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                               G++ + +R +AI   I +    DV+++AGKGHET  ++  
Sbjct: 456 KRNKIDRYEPTAPSLFSDKKGYVVEPDRKKAIHLGINIAKAGDVVLIAGKGHETYQLIGK 515

Query: 478 GEKKMSVDC 486
            +     D 
Sbjct: 516 -DSFPFDDR 523


>gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 491

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG+ G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREVAKEAI 483


>gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
 gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
          Length = 493

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 182/481 (37%), Positives = 265/481 (55%), Gaps = 2/481 (0%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D  + +  L +     +E +I  ++ DSR ++ G++F A+ G K  G  FI  A+  GA 
Sbjct: 3   DQVKTLADLGLTAKAGQEARITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGAS 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++     +         S+  ++V  + R+ L+  A+  +G  PE ++ VTGT+GK+SV
Sbjct: 63  AVLTDVEGAKIADDVLAGSSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTSV 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           A+F +QI    G ++  IG T    ++   +  TTP PI L + L+  ++ GVTH ++EA
Sbjct: 123 ATFTRQIWSALGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAMEA 182

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGLDQ RLDG++L A  FTN  +DH+DYH T  AYF AK  LF  +LP +  A+I  +
Sbjct: 183 SSHGLDQRRLDGVRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINLN 242

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D    E+   A   G R++SVG+ +   + +         Q V    +G+       L G
Sbjct: 243 DPRGAEIALLAAERGQRLISVGHGKVCDLQIAGQRFDATGQDVRYLWQGQPHQVRLNLIG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  N  +AAGL I  G  +  V   L +L  V GR +   T   G  ++VDYAHT ++
Sbjct: 303 GFQAENVALAAGLAIGSGAPAGDVFAVLPRLEGVRGRMQLAATRRNGASVFVDYAHTPDA 362

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +   LK +R    GRI+VVFG GGDRD  KRP+MG+ A + AD+  VTDDNPRSEDP  I
Sbjct: 363 IATALKALRPHVMGRIVVVFGAGGDRDTTKRPLMGQAAREHADVLYVTDDNPRSEDPATI 422

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           RA I+   P   E G+R EAI   ++ L   D L+VAGKGHE+  ++  G+     D + 
Sbjct: 423 RAAIMAACPEANEVGDRAEAILRGVDALGPGDALLVAGKGHESGQVIK-GDVYPFDDVEQ 481

Query: 489 I 489
            
Sbjct: 482 A 482


>gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
 gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
          Length = 486

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 252/503 (50%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG     ++  
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +      I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+  ADD      +    N   + L+   +       K+   H  +   + + G
Sbjct: 228 -PAGTFALTNADDKSG---LVMLQNTKAKKLTYSLRTLADFKGKILESHF-EGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +    G F  YN L   G  +++G D   VL  L  L  V GRFE +  +  G  
Sbjct: 283 RE--VMVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQ-SPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A+ L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D + +REI 
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIF 481


>gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
 gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
          Length = 491

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    V++ ++KL  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKKLAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSE+P  I  +++ G  G  +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEEPGTILDDMVQGANGNNYEVIIDRKEAIYHAISNAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQII-GKDVHHFDDREVAKEAI 483


>gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 491

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae Rd KW20]
 gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
 gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae Rd KW20]
 gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
          Length = 488

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++        LS  A   Y     N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYYQLAHHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G     +     + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSAFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK-PTVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G     +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 491

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG+ G  +    +R EAI  A+      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAVTKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREVAKEAI 483


>gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
 gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
          Length = 488

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/503 (30%), Positives = 249/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +++           +       +++I+ +  DSR I+ G +FVA+ G + DGH +I
Sbjct: 1   MKLGNILQAI-------TTGMVKGNLDKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI +GA A+V  +         T+      + V+++   +   A+  YG     +  +
Sbjct: 54  GKAIEKGATAVVCET------LPETLSETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G  +  I      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F+ L
Sbjct: 168 ADEGCKYAFMEVSSHAVAQKRIGGLKFAGGIFTNLTRDHLDYHKTFENYLKAKKAFFDGL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K + A+  ADD      +    N   +V +   +       KV     +  + + +  
Sbjct: 228 L-KTAFALTNADDRNG---LVMTQNTKAKVATYSLRSLADFKGKVLEDGFEGML-LDINN 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++ +      G F   N L        +G     VL  L  L  V GRF+ +  +++G  
Sbjct: 283 REVNV--QFIGRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSL-RSTKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM + A+ L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNTIHEVLNGRGKVITVVGAGGNRDKGKRPIMAQEAVRLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLKSNDMNKVLSITDRKEAIRTACMLAQAGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +++ EI 
Sbjct: 460 NYQDIK-GVKHHFDDKEVLSEIF 481


>gi|126461544|ref|YP_001042658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126103208|gb|ABN75886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 495

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 184/478 (38%), Positives = 267/478 (55%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   +++ ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + LS  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLSEAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A     RV+  G+     + L         Q +  S +G+      PL G FQ
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRI+VVFG GGDRD+GKRP+MG+ A + AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAAEHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V   +     D +  
Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484


>gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 491

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  ++ L  VPGRFE V  
Sbjct: 282 TLVTPNESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
          Length = 490

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/496 (32%), Positives = 259/496 (52%), Gaps = 21/496 (4%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  ELI+ L +  +    + +I+ + SDSR ++ G++FVA+ G   DGH +I  AI +GA
Sbjct: 2   ELKELIHPLEVLEVVGNADVEISGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIEKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
            AIV      L D +  +  + P+ + V ++   L    S  Y    +N++   VTGT+G
Sbjct: 62  AAIVCEEIPVLPDENMQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++A+ + ++ ++ G     +      I   A     TTP P+ L   ++ +   G  +
Sbjct: 122 KTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVDAGCEY 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++L P  + A
Sbjct: 182 AFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL-PASAFA 240

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  ADD      +    N   + L+   +       K+   H +    + V G++   + 
Sbjct: 241 LTNADDKSG---LVMLQNTAAKKLTYSLRTLADFKGKILESHFEGTEML-VNGRE--VMT 294

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G F  YN L   G  +++G D   VL  L  LH V GRF+ +  +  G    VDYAH
Sbjct: 295 RFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQ-SPLGYTAIVDYAH 353

Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++L  +L  I  +   +GR+I V GCGG+RD+GKRPIM K A  L+D  I+T DNPR 
Sbjct: 354 TPDALTNVLSGIHEVLDGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLILTSDNPRF 413

Query: 423 EDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           E+P++I  +++ G     +   +   +R +AI+TA  +  K DV++VAGKGHE    V  
Sbjct: 414 EEPDEIIKDMVAGLNAADMERTLCITDRAQAIKTATMLARKGDVILVAGKGHEDYQEVK- 472

Query: 478 GEKKMSVDCDIIREIL 493
           G K    D + ++EI 
Sbjct: 473 GVKHHFDDREQLKEIF 488


>gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parabacteroides distasonis
           ATCC 8503]
          Length = 486

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/503 (32%), Positives = 253/503 (50%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             AI +GA AIV        +  + +      +VV ++ + L L  SR YG     ++  
Sbjct: 54  DSAIEKGAVAIVCE------ETPSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSRKLMLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +      I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+  ADD      +    N   + L+   +       K+   H  +   + + G
Sbjct: 228 -PAGTFALTNADDKSG---LVMLQNTKAKKLTYSLRTLADFKGKILESHF-EGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +    G F  YN L   G  +++G D   VL  L  L  V GRFE +  +  G  
Sbjct: 283 RE--VMVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQ-SPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A+ L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K+   D + +REI 
Sbjct: 460 DYQEIK-GVKQHFDDREKLREIF 481


>gi|77462651|ref|YP_352155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387069|gb|ABA78254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 495

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 184/478 (38%), Positives = 267/478 (55%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   +++ ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A     RV+  G+     + L         Q +  S +G+      PL G FQ
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRI+VVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V   +     D +  
Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484


>gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
 gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
          Length = 491

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  + +  L G+F VYN L A    +  G+    ++  +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVMMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
 gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
          Length = 517

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/503 (33%), Positives = 245/503 (48%), Gaps = 25/503 (4%)

Query: 11  FPELINQLSIFPMQ----WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             ELI+ L     +      +R ++ VSSDSR I  G IFVA+ G   DGHL I  AI  
Sbjct: 13  LGELIDGLGGLVDRRGACASDRPVSGVSSDSRQIGPGSIFVAVRGFITDGHLHIDSAIEA 72

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA AIV  +      + A +R     L V  +RK L+  +   YG   + +  + VTGT+
Sbjct: 73  GAVAIVCEA------YPAELRDGVCYLRVTESRKALAELSKNCYGNASDQLMLIGVTGTN 126

Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ A  +  +   +G+ +  IG     I +   +   TTP P  L      +   G  
Sbjct: 127 GKTTTARLISSMLNAAGIPAGYIGTGLCRIGNRDIELERTTPEPNGLHALFRQMVDAGCC 186

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SSH L   R+ G++  +  FTNL  +H+D+H+T + Y  AK  LF  L   +  
Sbjct: 187 AAVMEVSSHALVLDRVHGLRFRSAVFTNLTPEHLDFHETMEEYAAAKRLLFSRLT-DDGF 245

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV------CAIHNKQQVTISVEG 297
           A++ ADD  +  +     N      S+                   +        ++   
Sbjct: 246 AVLNADDPQAGFMAAGLPNDYLYCCSLSGNSSLCDSDHRFRAFISASTVEGSTAEVTFGA 305

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +      PLPGE+ V N L A  + I++G+D A  L  L +   VPGR E + +  R   
Sbjct: 306 QSATMQVPLPGEYNVMNMLEAFAVGISLGLDPAKALAGLAESEAVPGRMERIWSADRSRC 365

Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L+  L+ +R +T    ++ VVFGCGG+RD+ KRP MG+IA +LAD  I+
Sbjct: 366 GVVDYAHTPDALQKALETLRAVTPSGSKLSVVFGCGGNRDRKKRPEMGRIAAELADRVIL 425

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPR E+PE I  E+  G+ G   +   +R EAIR A+E L   D+L+VAGKGHE   
Sbjct: 426 TSDNPRDENPELILDEVEAGMAGRVHLRISDRAEAIRRAVEGLGTGDILLVAGKGHEEYQ 485

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
            V  G K    D + +      +
Sbjct: 486 EVA-GRKHHFSDRETLAACFAEV 507


>gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
 gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
          Length = 498

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/501 (33%), Positives = 251/501 (50%), Gaps = 16/501 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+  +       L        + +I  ++++S   + G +F+ + G + DG  F 
Sbjct: 1   MKLKDLLNPNL------LPPEYHPALDMEITGLATNSHACKPGDLFLGMPGTRVDGGDFW 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NI 117
           P AIA GA A +VS + +      T     P ++   +     +  A+  Y    +   +
Sbjct: 55  PSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTTACAEIATAFYNHPAQTLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ +       +  +G   T    F +    TTP  + L   L+ 
Sbjct: 115 VGVTGTNGKTTTTHLIEFLLSNLDQPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQLAD 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G     +E SSH L Q R+ G       FTNL +DH+DYH T   YF AK  LF +
Sbjct: 175 AVGAGCQFGVMEVSSHALHQGRVLGCPFRVAVFTNLTQDHLDYHPTMDDYFEAKALLFSD 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   AII ADD Y K++M R  +      SV      I    +       +  +   
Sbjct: 235 DYLQ-GKAIINADDDYGKKLMARLGSDRFWSYSVSDPSADIWADSLVYQPTGIKGVLHTP 293

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
                F  PL G++ + N L A G  +A+G+D + +++ L     VPGR E V  +  + 
Sbjct: 294 MGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVQLSPEQD 353

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DL+D+A+V
Sbjct: 354 ITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLSDLAVV 413

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +I+ GIP     I  G+R +AIRTAI+     D +++AGKGHE  
Sbjct: 414 TSDNPRTEDPDRILQDILAGIPADVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKGHEDY 473

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   EK    D +  R+ L
Sbjct: 474 QIIGT-EKVHFDDREQARDAL 493


>gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
 gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
          Length = 491

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 491

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 247/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI  +   D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGASGNNYEVIIDRKEAIHHAITKVKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 486

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 263/503 (52%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++++YK   E+++  +       +  ++ +  DSR IQ+  +FVAI G+  +GH FI
Sbjct: 1   MLLKEILYKVALEVVHGST-------DVAVHNIHFDSRKIQSNDVFVAIRGSVSNGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AIA GA+AIV  +          + S    + V +T   L+  A+  Y    + +  +
Sbjct: 54  DKAIALGAKAIVCDT------LPTNLLSQITYVKVKDTNAALAYLATNFYDNPSQKLQLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++AS + Q+ +++G     +      +         TTP  + +   L  +
Sbjct: 108 GVTGTNGKTTIASLLYQLFKKAGFKVGLLSTVKILVDEIEHKATHTTPDSLTINYYLDKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSHG+ Q R +G++ + G FTNL  DH+DYH T   Y + K   F+ L
Sbjct: 168 VEAGCQYCFMEVSSHGIHQKRTEGLQFVGGVFTNLSHDHLDYHPTFSDYRDVKKSFFDNL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + A+   DD     +M    N   R LS   +  +   K +   +    + + +  
Sbjct: 228 -PKNAFALSNIDDKNGAVMM---QNTKARKLSYALK-TYADYKAIIIENQLSGLLLKINE 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++      L G F  YN L   G+ I +GI+   VL  L +L  V GRF+F+  + +   
Sbjct: 283 QEVWVR--LIGTFNAYNLLAIYGVAIELGIEKLEVLRLLSELESVSGRFQFI-VSKQNIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +L  I  I +   ++I + GCGGDRD+ KRPIM  IA  ++D AI+
Sbjct: 340 AIVDYAHTPDALENVLSTINDIRTRNEQLITIVGCGGDRDKTKRPIMANIASQMSDKAIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+E+PE I AE+  GI       ++   +R +AI+TA ++    D++++AGKGHE
Sbjct: 400 TSDNPRTENPETIIAEMEAGITAVNYKKYMSIIDRKQAIKTACQLAQPNDIILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   + NG +    D  I++EIL
Sbjct: 460 TYQEI-NGVRHDFDDMQIVKEIL 481


>gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
 gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
          Length = 485

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/507 (30%), Positives = 253/507 (49%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR +++G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+ +GA AI+        +  A +      + V ++   +   A+  YG     +  +
Sbjct: 54  PAAVEKGATAILCE------ELPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK S ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 227 MPKNSFSLTNLDDKNG---LVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K D ++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDAILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485


>gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 494

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 160/498 (32%), Positives = 251/498 (50%), Gaps = 10/498 (2%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++L       L   +S+      +  I  +  DSR I+ G  FVAI G+  DG  FI  A
Sbjct: 3   KELTLTHL--LAPWVSLSHQVCNDVAIQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I QGA AI+  +             +  ++ + +  + LS  ASRL       ++AVTGT
Sbjct: 61  IQQGANAIIAEAGEQNVHGKVEQLGSVSVVYIADLSQKLSQLASRLQPLSYNQLIAVTGT 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+++   + Q  + SG  +  +G T             TT + + + + LS L  QG 
Sbjct: 121 NGKTTITQLIAQWLELSGQRAAVLGTTGNGFLESLTPALNTTGNALEIQQTLSELEDQGA 180

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + ++E SSHGL Q+R+  +    G F+NL RDH+DYH T + Y  AK+ LF   +   +
Sbjct: 181 QYTAMEISSHGLVQNRVKALSFSVGVFSNLSRDHLDYHGTMEEYARAKLSLFT--VHDCA 238

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD      ++   N     LS    GK +   +V        ++ S +  +  F
Sbjct: 239 KAVINIDDTVGASWVELLDNCIPVSLSPIQTGKGVFATQVQYSEAGITLSFSGQYGEGRF 298

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL GEF   N +VA    +++GID  +++E   +L  V GR E      +  ++ VDY
Sbjct: 299 TVPLIGEFNASNVMVAFATLLSLGIDKQILVESASQLKPVLGRMELFHAQGK-AKVVVDY 357

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L  ++   +GR+  +FGCGGDRD GKRP+M  I   LAD+ I+TDDNPRS
Sbjct: 358 AHTPDALEKALLALKVHCNGRLWAIFGCGGDRDTGKRPMMASIGEKLADVVILTDDNPRS 417

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E P  I  +++ G+      I + +R  A+  A++  +  D++++AGKGHE   ++ N  
Sbjct: 418 ESPSAIVKDMLAGMASPENAIVEHDRYNALVHALKHSSGDDIILIAGKGHEDYQVLANET 477

Query: 480 KKMSVDCDIIREILGLIL 497
              S D +  + +L L L
Sbjct: 478 VHYS-DRESAQRLLELTL 494


>gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
 gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
          Length = 490

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 211/497 (42%), Positives = 288/497 (57%), Gaps = 21/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+      L N L+          +  +S DSR +    +F A+ G K DG  F 
Sbjct: 1   MRLAELLPG--ASLTNDLASL-------DVAALSCDSRKVAPKALFFAVPGTKADGLAFA 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA  +GA AIV          SA      P++ V + R  L+  A+R + + PE I+A+
Sbjct: 52  PQAARKGAVAIVAE------GKSAASIEGAPVIAVADVRAALAEAAARFFPRQPETIVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+FV+Q+   +G ++  +G    ++ + +    LTTP PI L + L  L++
Sbjct: 106 TGTSGKTSVAAFVRQLFAANGFAAASLGTLGVVAPNGSVYGSLTTPDPINLHETLDGLAA 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASSHGL Q RLDG++L AG+FTNL RDH+DYH T   Y  AK+ LF+ LL 
Sbjct: 166 SGVTHLALEASSHGLTQRRLDGVRLKAGAFTNLSRDHLDYHATMAEYLAAKLELFQRLLD 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              PA+I AD   + EV+      G ++ +VG +G+ + L +         + ++ EG+ 
Sbjct: 226 PGQPAVIDADSDVATEVIAACKARGLKIFTVGSKGESLKLLRATPKAAATGIEVAHEGRI 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G FQ  NALVAAGL I  G+ +   L  LE +   PGR E VG    G  IY
Sbjct: 286 YKLELPLAGAFQTSNALVAAGLAIVCGVSAERALTALEHIEGAPGRLEKVG-ERNGAPIY 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L  +R   +GR++VVFGCGGDRD GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 345 VDYAHKPDALEKVLCALRPAVAGRLLVVFGCGGDRDAGKRPIMGEIAAKLADLVIVTDDN 404

Query: 420 PRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PRSEDP  IRA I+ G  G     E G+R  AIR  +  LN  D L++AGKGHET  I+ 
Sbjct: 405 PRSEDPASIRAAILKGAAGAATVREIGDRASAIRAGVAALNSGDCLLIAGKGHETGQIIG 464

Query: 477 NGEKKMSVDCDIIREIL 493
           +       D D  R  L
Sbjct: 465 DVTLP-FSDADCARAAL 480


>gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
 gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
          Length = 491

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++ G  G  +    +R EAI  AI  +   D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 495

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 189/478 (39%), Positives = 269/478 (56%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P+  R  +I    ++ DSRH++ G++F A+ G+   G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   ++V ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALQGSTAALIVAEDPRQALAGAAALWFGRQPATMVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLADAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E   ++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A + G +V+  G+     + L         Q +  S +G       PL G FQ
Sbjct: 248 GPEIAALARDRGQKVIGTGFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTRLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAAGL I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAAGLAIGAGDAPERVFATFPQLQGVRGRMQLAATRQNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRIIVVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIIVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE   IV   +     D +  
Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHEAGQIVGT-DIFPFDDAEQA 484


>gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 484

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/494 (31%), Positives = 249/494 (50%), Gaps = 26/494 (5%)

Query: 11  FPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +LI+ +  I  +    ++I  V+ DSR I+A  +F+A+ G + DGH +I  AI +GA 
Sbjct: 3   ISKLISSIKPIEIIGDANKEIVGVNIDSRKIEANHLFIAVKGTQVDGHRYIETAIEKGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A++        D       +   + V +T +   + A+  YG+  +   ++ VTGT+GK+
Sbjct: 63  AVLCE------DLPEVKAPHVTYIQVQDTTQAAGVVATIFYGEPSKKVKLVGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++A+ +  + ++ G     +      I   A     TTP PI L   LS +   G  +V 
Sbjct: 117 TIATLLYNLFRKLGYKCGLLSTVCNYIEDEAVPADHTTPDPIALNYLLSRMVEAGCDYVF 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH + Q R+ G+    G FTNL RDH+DYH+T + Y +AK   F+ L PK S AI 
Sbjct: 177 MECSSHAIAQKRIAGLHFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDSL-PKTSFAIT 235

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD     ++    N    V +   +       ++   H  + + + ++G++       
Sbjct: 236 NADDKNGMYMV---QNTKATVKTYSARSLADFKARIIECHF-EGMYLEIDGREVGVR--F 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F V N L   G  + +      +L  L  L  V GR E + +   G    VDYAHT 
Sbjct: 290 IGKFNVSNLLAVYGASVMLQQQPENILLALSTLQSVSGRLEPIYSPE-GFTCIVDYAHTP 348

Query: 367 NSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           ++LE +L  I  +    G++I V G GG+RD+GKRP+M + A+  +D  I+T DNPR ED
Sbjct: 349 DALENVLLAIHDVLNGKGKVITVCGAGGNRDKGKRPLMAQEAVKQSDKVILTSDNPRFED 408

Query: 425 PEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P+ I  ++  G+        +   +R EAIRTA  +  K DV++VAGKGHE    + NG 
Sbjct: 409 PQDILNDMKEGLNNAQLKKTLTIVDRKEAIRTACSLAQKGDVVLVAGKGHEDYQEI-NGV 467

Query: 480 KKMSVDCDIIREIL 493
           K    D +++ EI 
Sbjct: 468 KHHFNDKEVLYEIF 481


>gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
 gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
          Length = 484

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/502 (30%), Positives = 236/502 (47%), Gaps = 37/502 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLF 59
           MKL +LI            +      + +I+ ++SD+R  ++AG +FV I G   DGH  
Sbjct: 7   MKLYELIK----------GVAETSLPDMEISGITSDTRAEVKAGGMFVCIKGKTFDGHDA 56

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
             Q + +G   +V      L+            +VV +TR    +  +  +G HPE    
Sbjct: 57  AQQMLDKGCAVVVCERDLGLE----------RQIVVSDTRAAFPMLCAAWFG-HPERELE 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK+++ + ++++    G     IG     I         TTP P  L +   
Sbjct: 106 LIGVTGTNGKTTITTVIKKVLSGFGCKVGLIGTCQNEIGEEIIPTARTTPEPYDLFELFR 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++  G  +  +E SS GL+Q R+ G     G FTNL +DH+D H T + Y+ AK  LF+
Sbjct: 166 RMADAGCKYTVMEVSSQGLEQKRVQGCHFKVGVFTNLTQDHLDVHGTMENYYQAKKMLFD 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   AII  DD Y +   K       +  SV     F+  + V       +     
Sbjct: 226 ----ISDSAIINIDDEYGRRYAKEIP-CPYKSYSVNGSADFM-AQDVMLGTAGVKYVFDD 279

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +  F +PG F V N+L        +G      +   EK+  V GR E V T  R 
Sbjct: 280 GRVKKNVSFNMPGLFNVSNSLAVIACMEVLGYTPCQTIREFEKIQGVRGRAEIVPT-GRD 338

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAHT ++L  +L  I+    G++  +FGCGG+RD+ KR  M   A + AD  IV
Sbjct: 339 FTVICDYAHTPDALINVLSAIKEGAKGKVKCLFGCGGNRDRTKRAPMAAAAAEHADFLIV 398

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+EDP++I  +++ G+ G    ++   +R EAI  A++   K D++V+AGKGHE 
Sbjct: 399 TSDNPRNEDPDEIINDVMEGLKGKDTPYVRITDRREAIHWAVKNAEKDDIIVLAGKGHED 458

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+  G K    + +++ E L
Sbjct: 459 YQILAGGVKIHFDEREVVAEAL 480


>gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
 gi|46576978|sp|Q819Q0|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
          Length = 491

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  ++ L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 488

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 241/476 (50%), Gaps = 13/476 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  + E++ DSR  +AG +F+AI G++ DG  +IPQA+  GA A++  +  + Q      
Sbjct: 15  DINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQQHLQVHY 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
               P++      + LS  A   Y    ++  ++ VTGT+GK++ A  + Q  Q  G + 
Sbjct: 75  EQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTG 134

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +    ++   TT S + +  +L+   ++G    ++E SSHGL QHR++ + 
Sbjct: 135 AVMGTIGNGLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESVH 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A  FTNL RDH+DYH T + Y  AK RLF EL       II ADD      +    +A
Sbjct: 195 FSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTEL--DSRYQIIDADDPVGAVWLAEMPHA 252

Query: 264 GCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +   Q  ++    V   H    +       + +   PL G F V N L+   
Sbjct: 253 VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNLLLVTA 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +    + ++  + KL  V GR E + T  +   + VDYAHT ++LE  L+  R   
Sbjct: 313 TLLTLDYPLSGLINSVHKLTGVCGRMEMLHTPQK-PTVIVDYAHTPDALEKALQAARLHC 371

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437
            G++  +FGCGGDRD GKRP+M KIA  LAD  I TDDNPR+E+P+KI A+I++G     
Sbjct: 372 RGKLWCIFGCGGDRDSGKRPLMAKIAEQLADHVIATDDNPRTEEPKKIMADILNGFVHPQ 431

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  R +AI TAI+   + DV+++AGKGHE   I+    K    D +++R  L
Sbjct: 432 SVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQII-GKTKYHFSDQEVVRNYL 486


>gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 2336]
 gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336]
          Length = 495

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/481 (32%), Positives = 242/481 (50%), Gaps = 17/481 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+ ++ E+  DSR  + G +FVAI G++ DG  FI QAI  GA A++  +    Q  + +
Sbjct: 19  RDIELQEMILDSRLAKTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVS 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
              N P++      K LS  A R Y    +   ++ VTGT+GK+++A  + Q  Q  G +
Sbjct: 79  FEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHT 138

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G     +    ++   TT S I +  +L     QG    ++E SSHGL QHR++ +
Sbjct: 139 SAVMGTIGNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVSSHGLVQHRVEAL 198

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              AG FTNL RDH+DYH T + Y  AK RLF EL  +     +  DD      +     
Sbjct: 199 TFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKI--LNVDDEIGATWLIELSK 256

Query: 263 AGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               V++V  +         ++    +        +  +    +     PL G F V N 
Sbjct: 257 DDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNGILSSPLIGGFNVSNL 316

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+     +++G D   +L  + +L  V GR E +    +   + VDYAHT ++LE  L++
Sbjct: 317 LLVLATLLSLGYDIDKLLATVRQLTGVCGRMEMLSAKHK-ATVIVDYAHTPDALENALQS 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                 G++  +FGCGGDRD+GKRP+M  IA   AD  IVTDDNPR+E+PE+I  +I+ G
Sbjct: 376 AAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNPRTENPEQIMQDILTG 435

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                       R +AI+TA++   + DV+++AGKGHE   I+    K    D +I+++ 
Sbjct: 436 FQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGT-TKYHFSDQEIVKKY 494

Query: 493 L 493
            
Sbjct: 495 F 495


>gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
 gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
          Length = 491

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+     ++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETTIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREVAKEAI 483


>gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
 gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
          Length = 491

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFLKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHDREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    V++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSE+P  I  +++ G  G  +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQII-GKDVHHFDDREVAKEAI 483


>gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 491

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAVILDDMVHGARGNNYEVIIDRKEAIHHAIAKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
 gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
          Length = 486

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/497 (32%), Positives = 253/497 (50%), Gaps = 26/497 (5%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   L+  +SI    +  ++ I  V  DSR ++ G +FVAI G + +GH +I QA   GA
Sbjct: 2   NLKTLLKNISIKASLYEEDKPITSVCFDSRKVEKGSMFVAISGTQSNGHEYIDQATRSGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            AIV             +  +   ++V NT   L+L A+  YG   E +  + VTGT+GK
Sbjct: 62  TAIVCEQ------LPQLLFPDVSYIIVPNTHSALALIAANFYGNPSEKLTLVGVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++A+ + Q+ +++G  +  +   +  I +   +   TTP P+ L   L  +  QGV + 
Sbjct: 116 TTIATLLYQLFRKAGQKAGLLSTVAVYIDNQRFEATHTTPDPLQLNHYLHLMVEQGVKYC 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSHG+DQHR +G++   G FTNL RDH+DYH+T  AY + K R F+ L P  + A+
Sbjct: 176 FMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDAL-PATAFAL 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD     ++    N   +  +   +    +   +          + +     +    
Sbjct: 235 VNNDDKNGAFML---QNTKAQKKTYALKTYSDYKAYIIESRFDG---LLLRINQHEVWTK 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF  YN L        +GID    L  +  +  V GRF++   +  G    VDYAHT
Sbjct: 289 LIGEFNAYNLLAVYAAATLLGIDELEALTLISAIEPVAGRFQY-AVSVTGVITIVDYAHT 347

Query: 366 SNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D  I+T DNPR+E
Sbjct: 348 PDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVILTSDNPRNE 407

Query: 424 DPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           +PE I AE+  G+            +R +AI++  +   K D++++AGKGHET   +  G
Sbjct: 408 EPETILAEMEQGVQPQHFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKGHETYQEIK-G 466

Query: 479 EKKMSVDCDIIREILGL 495
            K    D + +RE L L
Sbjct: 467 VKHHFDDFETVREFLEL 483


>gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus weihenstephanensis KBAB4]
 gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           weihenstephanensis KBAB4]
          Length = 491

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 253/504 (50%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPTE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y NAK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  AI+ +DD  ++E M+   +    V++ G      I  + +         
Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP+ I  ++++ + G  +    +R EAIR+AI  +  +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 495

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 184/478 (38%), Positives = 267/478 (55%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   +++ ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A     RV+  G+     + L         Q +  S +G+      PL G FQ
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRQNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRI+VVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V   +     D +  
Sbjct: 428 ILGACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484


>gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
 gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
          Length = 491

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYHQT + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                   E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNGEKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|126658487|ref|ZP_01729635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
 gi|126620229|gb|EAZ90950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
          Length = 490

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/478 (32%), Positives = 236/478 (49%), Gaps = 12/478 (2%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               ER +  +S++S   Q G IF+ + G + DG  F   A+  GA A ++S   + +  
Sbjct: 13  HPALERDVKGISTNSHACQTGDIFIGMPGTRVDGGEFWQSAMEVGATAAIISPQAAEKFP 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
                 +  +++VD+     +  A+  YG   +   ++ VTGT+GK++    ++    +S
Sbjct: 73  P---NDDQCVIIVDDLITVAAEIAAAFYGHPAQQLKMIGVTGTNGKTTTTHLIEYFLGQS 129

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +  IG   T    F Q    TTP    L + L+   +    +  +E SSH L Q R+
Sbjct: 130 QKPTALIGTLYTRWPGFEQTAIHTTPFAPELQEQLAQAVAANNEYCVMEVSSHALAQGRV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                    FTNL +DH+D+H+  + YF+AK  LF     +E  AII  DD Y K +++ 
Sbjct: 190 KQCPFKVSVFTNLTQDHLDFHKDMEDYFSAKQLLFTPDYLQEK-AIINLDDPYGKRLIES 248

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                    SV       +   +    N    T+       +F  PL G+F + N L A 
Sbjct: 249 FKPEQVWSYSVSNAEADFYTSDLTYRGNGVTGTLYTPLGSVEFSSPLVGQFNLSNVLAAV 308

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRT 378
              +  G+D    +E L     VPGR E V  N  +   + VDYAHT +SLE  LK  R 
Sbjct: 309 SAVLHFGLDLTETIESLPHFLGVPGRMERVQINEKQDISVIVDYAHTPDSLENSLKAARP 368

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G++I VFGCGGDRD+ KRP+MG+ +  LAD+++VT DNPR+EDP++I  +I+ GI  
Sbjct: 369 FVKGKLICVFGCGGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDILTGISQ 428

Query: 439 FIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +E     +R EAI+TAI      D +++AGKGHE   I+   EK    D +  R+ L
Sbjct: 429 SVEPLVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQILGT-EKIHFDDREEARKAL 485


>gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 512

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/481 (36%), Positives = 267/481 (55%), Gaps = 22/481 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDG---HLFIPQAIAQGAEAIVVSSAY--SLQDFS 83
           +++ +S DSR +  G +F+     + DG     F+ +AIA+GA  +V S  +  S+ +  
Sbjct: 31  RLSGISDDSRKVSPGDLFL----LRMDGPLQEKFLDEAIAKGAALLVASRRHLPSVLERR 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
                  P+ VV+N ++   + AS  YG+      ++ VTGT+GK++ +  V+ +  RSG
Sbjct: 87  QVSGRKVPVCVVENIQEAAGVIASAWYGEPSRSMKVVGVTGTNGKTTSSFLVRSMLDRSG 146

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L +  IG     +     +   TTP  ++L ++     + G+  +S+E SSH L Q R+ 
Sbjct: 147 LRAGLIGTVWFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLVAMSMEVSSHALSQDRVA 206

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--PAIIYADDAYSKEVMK 258
           G    A  FTNL RDH+DYH+T + YFNAK RL   + P  S  PA+I ADD Y + + +
Sbjct: 207 GTFFSAVHFTNLTRDHLDYHKTFEDYFNAKARLLHWVNPDGSLPPAVINADDPYGRILAE 266

Query: 259 R-AHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + A     R+L+ G+  +  IH  +     +  +  +SVEG+       LPG+F + N +
Sbjct: 267 QIARRGDRRLLTYGHSERLSIHPLESVISLDGIKGALSVEGRRISVDSTLPGDFNLQNIM 326

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  +A+GI    V   ++ L  VPGRFE      +   + VDYAHT ++L+ IL  +
Sbjct: 327 GAVGCALALGISPEAVEAGIQSLPGVPGRFERANPGGK-FAVIVDYAHTDDALKNILSAL 385

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T GR+I VFGCGGDRD+GKRP MGK+A +L+DI +VT DNPR+EDPE I  EI  G+
Sbjct: 386 RPLTPGRVITVFGCGGDRDRGKRPRMGKVAGELSDIVVVTSDNPRTEDPEFIIDEIEPGL 445

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 ++ + +R  AI  A+ +    D +++AGKGHE   I+ +  K    D +  REI
Sbjct: 446 NMTGRSYLREVDRRTAIARALSLAQPGDAVLIAGKGHEPYQIIGH-AKSHFDDRETAREI 504

Query: 493 L 493
           L
Sbjct: 505 L 505


>gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
 gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
          Length = 491

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 243/503 (48%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M R+  A      +G     +  K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYM-RSTAATVVTYGIGTTSDVM-AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD-G 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIGK-DVHHFDDREVAKEAI 483


>gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
 gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
          Length = 491

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREVAKEAI 483


>gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 539

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 199/499 (39%), Positives = 273/499 (54%), Gaps = 14/499 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+       +  L+          I+ +++DSR +  GW+F A+ G K DG  FI
Sbjct: 50  MMLSNLLADTSAAPVTSLTGMAG----VHISGITADSRQVMPGWVFAALPGQKTDGRRFI 105

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+  +  +            P++     R+ L+L A+RL G  P  I A+
Sbjct: 106 ADAVERGAAAILAPAGTAWPPGVPP----RPMIQDAEPRRLLALMAARLAGAQPHTIAAI 161

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S A F++QI    G S+  +G    I+  F   + LTTP P+ LA+ L+ L+ 
Sbjct: 162 TGTNGKTSTADFLRQIWTLLGRSAASLGTLGLIAEGFHPQDSLTTPDPVTLAQTLAMLAR 221

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+ H ++EASSHGLDQ RLDG++L A +FTNL RDH+DYH T+ AY  AK+RLF +LLP
Sbjct: 222 AGIQHTALEASSHGLDQFRLDGVRLSAAAFTNLTRDHLDYHGTEAAYRTAKLRLFADLLP 281

Query: 240 KESPAI--IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +PAI     D    + +   A   G R++  G     + L  +      Q +TI  EG
Sbjct: 282 AGAPAIASPTLDQITLEALRGIARRRGLRLIIAGSPDSPLPLLAIEPHAGGQYLTIREEG 341

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PLPG FQ  N + AA +  ++G     ++  L +L  V GR E   T   G  
Sbjct: 342 TTHRINVPLPGRFQADNIITAATIAASLG--KRGIVPLLSRLTGVRGRMEQAATLPNGAA 399

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           IYVDYAHT ++LE +L  +R  TSG++ VVFG GGDRD GKRP+MG+ A   AD  IVTD
Sbjct: 400 IYVDYAHTPDALERLLDALRPHTSGKLHVVFGAGGDRDPGKRPLMGEAARTHADRLIVTD 459

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSE+P KIRA I+   P   E G+R EAI  AI  L   DVL +AGKGHE    +  
Sbjct: 460 DNPRSENPAKIRAAILAACPDAEEIGDRAEAIAHAIRSLQPGDVLAIAGKGHEQGQTIGK 519

Query: 478 GEKKMSVDCDIIREILGLI 496
                  D  + R I   +
Sbjct: 520 -TVHPFDDVSVARAIAAQV 537


>gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 498

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/499 (32%), Positives = 257/499 (51%), Gaps = 28/499 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E++  + +       E ++  ++ DSR    G++FVA+ G + DGH +I  A+  GA 
Sbjct: 3   FGEILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+++     L D+ A  R       V ++RK L+L ++R Y      +  + VTGT+GK+
Sbjct: 63  AVILQKDMILPDYIAWAR-------VPDSRKALALLSARFYNYPSRRLKMIGVTGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A  ++ + + +G  +  IG     I     + + TTP    L   LS +   GV  V+
Sbjct: 116 TTAHLIESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVVA 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--- 243
           +E SSH L+ HR+DG +     FTNL +DH+D+H+  + Y  AK  LF  L         
Sbjct: 176 MEVSSHALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNGA 235

Query: 244 --AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AII ADD  +  + + +     +V++ G  +   I  + +    +    T++      
Sbjct: 236 KYAIINADDEAAARLTRLSGG---QVITYGMVKKADIIAENITVRADGASFTVASRQGKV 292

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G+F VYNAL A  + +  G    ++   LE +  VPGRFE V    +   + V
Sbjct: 293 TINLNLTGKFNVYNALAAYSVGMVSGFSPQVIKHALEGVKGVPGRFELVD-EGQDFAVIV 351

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + L  IL   R  T+G++I VFGCGGDRD+ KRP+MG+I+  L+D  IVT DNP
Sbjct: 352 DYAHTPDGLRNILNTAREFTAGKLINVFGCGGDRDRTKRPLMGEISGRLSDFTIVTSDNP 411

Query: 421 RSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           R ED ++I  +I+ GI   +E        +R  AI+ A+      DV+++AGKGHET  I
Sbjct: 412 RREDADRIILDILVGISRVVERDYYTIISDRRAAIKAALAQAASGDVVIIAGKGHETYQI 471

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +  +    D + +R+ L
Sbjct: 472 IGD-VRYAFDDREEVRQAL 489


>gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
          Length = 498

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/504 (33%), Positives = 254/504 (50%), Gaps = 28/504 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  EL+N  S   +    ++ I ++++DSR ++ G +F+ + G   DGH ++ +A+ +G
Sbjct: 2   KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A AI+     S       +     ++ V NTR  +   A   +    +   ++AVTGT+G
Sbjct: 62  AVAIIAEKKIS-------VPEGVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    +  I +++G  +  IG   + I     +   TTP  I L + L  +    VTH
Sbjct: 115 KTTTTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDVIDLQRLLYKMKKAKVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-----EELLP 239
           V +E SSH L   R++G +     F+NL  DH+D+H+T   Y NAK +LF     E  + 
Sbjct: 175 VCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEG 297
               A I  DD YS  ++    +     L      +   LK +         +     + 
Sbjct: 235 SNKNACINIDDDYSHIMIDAIKDRKLCKLHTSSMNRDAELKVISTEFTGKNTKFICVYKN 294

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K++     L G F VYN + A    I+ GID   +++ L     VPGRFE +    +   
Sbjct: 295 KEYPVTVKLMGRFNVYNIMAAMSAAISEGIDFNFIIKALTDFTNVPGRFELID-EGQEFS 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE IL   R IT+G+IIVVFGCGGDRD  KRPIMG+IA   +DIAIVT 
Sbjct: 354 VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRPIMGRIAAKYSDIAIVTS 413

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DNPR+EDP  I  +++ G+    EK         +R  AI+ AIE+    D++++AGKGH
Sbjct: 414 DNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIVIIAGKGH 473

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I+ N       D +  R +L
Sbjct: 474 EDYQILKNKTIH-FDDREEARRVL 496


>gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
 gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
          Length = 491

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/504 (30%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREVAKEAI 483


>gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 491

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     D + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFDVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DD  + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDVVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQII-GKDVHHFDDREVAKEAI 483


>gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
          Length = 491

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREVAKEAI 483


>gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
 gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
          Length = 492

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/502 (32%), Positives = 237/502 (47%), Gaps = 25/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+     N P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDDG---KFTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E++ R       +   GY   +   I +    A  +  +     
Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQADICITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VLE L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQSAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPEYVEADRAAAIRYAVERAATNDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             V  G K    D +I  + L 
Sbjct: 469 QDV-QGVKHHFSDFEIAEKALA 489


>gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 491

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSE+P  I  +++HG     +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEEPGAILDDMVHGANGKNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D +I +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREIAKEAI 483


>gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 490

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/496 (32%), Positives = 256/496 (51%), Gaps = 15/496 (3%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  +L+    +  +  + + +  ++++S  +Q  + F AI GN  DGH FI  AI +GA
Sbjct: 2   KELQDLLTGEKVVNL-GKSQVVKGITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITKGA 60

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
             + +    S+ D          I+  +NTRK L+  +++ Y +  +   ++ +TGT+GK
Sbjct: 61  STVFIQ-DTSIIDTLKRKYPYINIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SV++ + Q  + +G     IG  +  I      +  TTP P+   + L+ +  +G   V
Sbjct: 120 TSVSNLLAQYYENAGYKVGVIGTINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDVV 179

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESP 243
             E SSH   Q R+       G FTNL +DH+DYH T + YF AK   F +  L   ++ 
Sbjct: 180 VAEVSSHAAHQFRVYSTLFHGGIFTNLTQDHLDYHGTMENYFLAKREFFNQIQLFNDKAI 239

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A +  DD Y K +           ++ G++G+F  +K       +    I  +GK  +F 
Sbjct: 240 ASVNIDDPYGKRIYNDFKEK-IDFITYGFEGEFK-IKDYNLSLFETLFNIEYKGKTLNFK 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F VYN   +    I  G D   + +    L  + GRFE V   ++   + +DYA
Sbjct: 298 TKLRGLFNVYNLSASISFLIKDGFDIDFLKDKTLDLKPIRGRFEVV--EAKDFIVVIDYA 355

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE ILK++  I   R+I VFG GG+RD+ KRP+MGK+A D +DI I+T DNPR E
Sbjct: 356 HTPDALENILKSLNQIKQNRVITVFGAGGNRDRTKRPLMGKVAQDFSDIVILTSDNPRFE 415

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP +I  +I+ GI      I + +R +AI  AI+   K D++++AGKGHE   I+ +   
Sbjct: 416 DPNQIIKDILEGITQKSKVIVEPDRKKAIEYAIKTAQKGDIVLIAGKGHENYQIIKDQVI 475

Query: 481 KMSVDCDIIREILGLI 496
               D +++ +IL  I
Sbjct: 476 P-FDDKEVVNQILKEI 490


>gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
 gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
          Length = 491

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/504 (30%), Positives = 253/504 (50%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPTE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  AI+ +DD  ++E M+   +    V++ G      I  + +         
Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP+ I  ++++ + G  +    +R EAIR+AI  +  +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
 gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
          Length = 491

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 252/504 (50%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPTE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  AI+ +DD  ++E M+   +    V++ G      I  + +         
Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP+ I  ++++ +    +    +R EAIR+AI  +  +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPKAILDDMVNDVNRDNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
 gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
          Length = 491

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/504 (30%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH L+  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALNLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  ++ L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQII-GKEVHHFDDREVAKEAI 483


>gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 493

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 166/493 (33%), Positives = 249/493 (50%), Gaps = 21/493 (4%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              LI+ L +       +++I  V  DSR I+ G++FV I G K DGH ++  A+  GA 
Sbjct: 4   LENLISGLEVIETSGDLDKEIKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGAGAI 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A++V                  ++ V +TRK L + AS  YG       ++ VTGT+GK+
Sbjct: 64  ALLVEK-------PVAGTQGVTVVRVKDTRKALPIVASNFYGAPSRQLRLIGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +  + + +G     +G   +      +    TTP  + L + +  +  +G  +  
Sbjct: 117 TTTHLITSVLEEAGYQVGILGTLYARWRGKQESMAHTTPESVDLERFIRRVVDEGGDYTV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LD  R+D +   A  FTNL +DH+DYH+T   Y  AK++LF  L  K+    +
Sbjct: 177 MEVSSHALDLGRVDCLDFDAAVFTNLTQDHLDYHRTMDDYREAKLKLFRRLKNKDGHFAV 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D  S  V + A  +  RV++ G      +   +V         T+     D      
Sbjct: 237 INRDDPSWTVFRDATPS--RVVTYGITDEAAVRATEVRVEPEGSCFTLKWPEGDLRLSLN 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F V NAL AA   +  GI   ++   LEK+  +PGRFE V    +   + VDYAHT
Sbjct: 295 LSGWFNVSNALAAAAFALKEGISPEVIKRGLEKVSGIPGRFETVKC-GQDFTVIVDYAHT 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE ILK  R I   RII VFGCGGDRD+GKRP+MGKIA + +D +I+T DNPRSEDP
Sbjct: 354 PDGLENILKTARAIAKKRIITVFGCGGDRDRGKRPLMGKIAAECSDFSIITSDNPRSEDP 413

Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             I  +I+ G+       +    +R  AI  AI M   +D++++AGKGHET  ++ + E 
Sbjct: 414 LAIIEDIVTGVKKVPNSRYTVIADRRVAIGQAINMAQAEDMVIIAGKGHETYQLLKD-EV 472

Query: 481 KMSVDCDIIREIL 493
               D ++ +E +
Sbjct: 473 LPFDDREVAKEFI 485


>gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
 gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
          Length = 511

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/474 (34%), Positives = 250/474 (52%), Gaps = 20/474 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           RK+  ++ +S+ +Q   +FVA+ G + DGH FI QAI +GA A+V      + +  A   
Sbjct: 35  RKLTHLTDNSQEVQPRGLFVAVRGERVDGHRFIEQAIERGAVAVVGE---FVPEAFAERF 91

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
                + V N+R+ L + A+  +      +  + +TGT+GK++ A  V  +    G  + 
Sbjct: 92  PKASFVQVSNSRRALGILATIFHMNPARRLRLIGITGTNGKTTTAFLVYHMLNAIGQETG 151

Query: 146 QIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG               TTP PI L   L  ++     +  +E SSH L+Q R+ G+  
Sbjct: 152 LIGTVCYRFGRHELPASNTTPGPIELNHLLRRMTGVPCKNCVMEVSSHALEQERVAGLSF 211

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL RDH+DYH + +AY  AK +LF+ L  + + A+   DD     ++       
Sbjct: 212 SIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDGLTFR-ATALYNIDDPSGPAMVADTQACC 270

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              +S G +       ++   H+ + +T++++G+     FPL G F  YN L A G+  A
Sbjct: 271 ---ISYGQREDAQIRMRIVG-HSLEGLTLNIDGR--FQRFPLVGCFNAYNLLAAYGVGRA 324

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG- 382
           +G+D  L+LE L ++  +PGRFE   T   G    VDYAHT ++LE +L+ IR  +  G 
Sbjct: 325 MGLDPDLLLEALGRVPQIPGRFERF-TFEDGTTAIVDYAHTPDALENVLRTIREVMPEGA 383

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439
           R+  VFGCGG+RD+GKRP+MG +A  LAD  IVT DNPRSEDP +I  +I  G+      
Sbjct: 384 RLWCVFGCGGERDRGKRPMMGAVAERLADCVIVTSDNPRSEDPLQIFEDIRQGMRHPEAA 443

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + + +R  AI  A ++    DV++VAGKGHE   I+   EK    D  +++E  
Sbjct: 444 LWEVDRARAIEQAAKLCRPGDVVLVAGKGHEAYQIIGT-EKIPLDDRQLVQEYF 496


>gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 491

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DD  + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDVVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQII-GKDVHHFDDREVAKEAI 483


>gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
 gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
          Length = 499

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/506 (31%), Positives = 245/506 (48%), Gaps = 32/506 (6%)

Query: 11  FPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +LI+ L   P++  E     +I +V++DSR ++ G +F  + G   DGH F   A   
Sbjct: 1   MKQLIDLLKATPIERMEGNSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNFANMAAEN 60

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA AI+             + S+  I+ V +TRK +       +    + +  +A+TGT+
Sbjct: 61  GAAAIIAEKKID-------VASDVTIIYVADTRKAMEDIVPYFFDYPSKKMRMIALTGTN 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    +  I    G  +  IG   + I         TTP  I L + L  +  + VT
Sbjct: 114 GKTTTTHVISHILHHVGYKTGVIGTVHALIGDKEIPTHNTTPDVIDLQRILYQMLKENVT 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----L 238
           HV +E SSH L   R+ G +     FTNL  DH+DYH+T   Y  AK  LF+ +     +
Sbjct: 174 HVCMEVSSHSLVMGRVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKMVSDKDQI 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
                A I +DD Y+  +     +   C+V + G+ G   +    V          I + 
Sbjct: 234 KDGKSAWINSDDPYAAVMSNAISDPDFCQVSTYGFNGNPDLKASDVHFSGKSSSFKIQLG 293

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K +     L G F VYN + A G  ++ G+D   +   L     V GRFE +    +  
Sbjct: 294 EKRYVIKTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELI-EEGQSF 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE IL   + I  GR+I  FGCGGDRD+ KRPIMG+IA + +D+ ++T
Sbjct: 353 SVVVDYAHTPDGLEKILTTAKEIAKGRLITCFGCGGDRDKLKRPIMGRIAANYSDVVVIT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            DNPR+EDPE+I  EI  G+           +    +R  AI+ A+ + + QD++++AGK
Sbjct: 413 SDNPRTEDPEEIIREIAAGVQDISQHKSNLLYKTVTDRRAAIQYALSIAHNQDIVLIAGK 472

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE   I+ +       D + +R+ L
Sbjct: 473 GHEDYQILKDKTVH-FDDREEVRKAL 497


>gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 507

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/517 (32%), Positives = 255/517 (49%), Gaps = 38/517 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E ++             +  V+ DSR ++ G +FVA+ G KEDG  ++
Sbjct: 1   MKLTDVLAGCGAEQVSGGR------SSVDVTGVTQDSRRVKPGDLFVAVPGTKEDGAQYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+++GA A+V               S  P   V ++RK L+L A+  YG+  + +  L
Sbjct: 55  GEAVSRGAVAVVSEKPVG--------SSQVPFFKVSSSRKALALIAANFYGRPAQQLTLL 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I   +  S+  IG     ++    +   TTP P+ L +    +
Sbjct: 107 GVTGTNGKTTTTYLLEAISAAAYASTGVIGTLGYKVNGKVVETANTTPDPLELHRIFREM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V +E SSH L Q R+ G+   A +FTNL RDH+DYH+  + YF AK RLF E 
Sbjct: 167 VDAGVETVVMEVSSHALVQERVHGLTFKAAAFTNLTRDHLDYHKDIEEYFQAKRRLFGEN 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
           L     A++  DD Y+  +                QG   I    V       + T+   
Sbjct: 227 LSATGVAVVNGDDTYASRIYNELRGQKRMAWKFSRQGAGEISAADVSFSLQGIKATLKTP 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR 354
             D      L G   + N L A G+ +  GI    V   +E++  +PGR E V       
Sbjct: 287 AGDIPVKSRLVGPHNLENILAATGVALGAGIARRDVQTGIERMGGLPGRMERVENYMPGP 346

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++L+  L+  RT+  GR+IVVFGCGGDRD+GKRP+MG  A + AD+ +
Sbjct: 347 APAVLVDYAHTDDALKRALEASRTLAKGRVIVVFGCGGDRDKGKRPLMGTAAAEGADLVV 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLN 457
           VT DNPR+EDP +I  ++  G+                  G++   +R  AI TA+ +  
Sbjct: 407 VTSDNPRTEDPAEIIEQVTPGLEKGGLRRISAGKAKSGEKGYLVDADRRAAIETAVGLAR 466

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + DV++VAGKGHET  IV   EK+   D +   + L 
Sbjct: 467 EDDVVLVAGKGHETYQIVGT-EKRPFDDREAATKALA 502


>gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
 gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
          Length = 482

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/506 (31%), Positives = 257/506 (50%), Gaps = 38/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+    P       +      + +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG       ++
Sbjct: 54  PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKAL 174
            VTGT+GK+++A+ +    +      +++G  ST+ ++  D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYNTFR---YFRYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F
Sbjct: 165 GRMADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++L PK + ++   DD      +    N   +V +   +       +V   H +  +   
Sbjct: 225 DDL-PKSAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML--- 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +
Sbjct: 278 LDFNNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQ 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D 
Sbjct: 337 GVTAIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDR 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGK
Sbjct: 397 VIITSDNPRFEEPQDIINDMLAGLDAEDMKKTVSIADRKEAIRTACMLAEKGDVILVAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    D ++++EI 
Sbjct: 457 GHENYQEIK-GVKHHFDDKEVLKEIF 481


>gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 491

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREVAKEAI 483


>gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
          Length = 495

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 245/495 (49%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ + +   ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G     +         TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II A
Sbjct: 184 VSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A        + VG+ G ++   +V    N   +       +     
Sbjct: 242 DDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++G     +L     L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLGYPLTQLLAAASHLQPVCGRMEVFNAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI      DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG++
Sbjct: 481 YS-DRVTVARLLGVV 494


>gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
 gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
          Length = 491

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 249/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  AI+ +DD  ++E M+   +    V++ G      I  + +         
Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGNVYCIVGCGGDRDRTKRPIMASVAAEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP+ I  ++++G  G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPKAILDDMVNGANGNNYEVIIDRKEAIHCAIAKAKDADIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQII-GKKVHHFDDREVAKEAI 483


>gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
 gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 491

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREVAKEAI 483


>gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
 gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
          Length = 491

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +      +I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERSIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DD  + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDVVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQII-GKDVHHFDDREVAKEAI 483


>gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Arthrospira platensis NIES-39]
          Length = 498

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/501 (33%), Positives = 251/501 (50%), Gaps = 16/501 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+  +       L        + +I  ++++S   + G +F+ + G + DG  F 
Sbjct: 1   MKLKDLLNPNL------LPPEYHPALDMEITGLATNSHACKPGDLFLGMPGTRVDGGDFW 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NI 117
           P AIA GA A +VS + +      T     P ++   +  K  +  A+  Y    +   +
Sbjct: 55  PSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFYNHPAQTLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ +       +  +G   T    F +    TTP  + L   L+ 
Sbjct: 115 VGVTGTNGKTTTTHLIEFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQLAD 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G     +E SSH L Q R+ G       FTNL +DH+DYH T   YF AK  LF +
Sbjct: 175 AVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALLFSD 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   AII ADD Y K++M R         SV      I    +       Q  +   
Sbjct: 235 DYLQ-GKAIINADDDYGKKLMARLGGDRVWSYSVSDPSADIWADSLVYQPTGIQGVLHTP 293

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RG 355
                F  PL G++ + N L A G  +A+G+D + +++ L     VPGR E V  +  + 
Sbjct: 294 MGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDCLPAFGGVPGRMERVQISPEQN 353

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DL+D+A+V
Sbjct: 354 ITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLSDLAVV 413

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +++ GIP     I  G+R +AIRTAI+     D +++AGKGHE  
Sbjct: 414 TSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKGHEDY 473

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   EK    D +  R+ L
Sbjct: 474 QILGT-EKVHFDDREQARDAL 493


>gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 484

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 243/471 (51%), Gaps = 16/471 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR ++ G +FVA+ G+  DG  FI  A+ +GA  +V                   
Sbjct: 20  NIRIDSRKVRQGDVFVALPGSSVDGGAFIADALERGASYVVC-----RPCSVPVQTGGAA 74

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++V ++ RK L L A+  Y        ++ +TGT+GK++    +  + + +G  +  +G 
Sbjct: 75  VVVAEDPRKALGLLAAARYDTADTGFPLVGITGTNGKTTCTYLLDHLFRTAGHVTGLLGT 134

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +       +   +TTP  + L   LS +   GV    +E SSH LDQ R+ G +  A  
Sbjct: 135 VNFRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEAAFMEVSSHALDQQRVSGARFAAAL 194

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL +DH+DYH   +AYF+AK RLF EL  ++    + ADD Y + ++ +        +
Sbjct: 195 LTNLTQDHLDYHHDMEAYFSAKSRLFLELPDEDKVCAVNADDPYGRRLLPQLGRGVGYSV 254

Query: 269 --SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             +V    + +    + +  +   +++  EGK ++   PL G F   N        +A+G
Sbjct: 255 QGTVVPDCQVLQATILSSGPDGLHLSMDFEGKTWELRSPLVGAFNASNLAGVQAAGLAMG 314

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +     ++ L     VPGR E +  N +G  ++VDYAHT ++LE +L+ +R     R+I 
Sbjct: 315 LPVE-AMQGLASFSGVPGRMERI-ENDKGLNVFVDYAHTPDALENVLRALRAAGFARVIA 372

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443
           VFGCGGDRD+ KRP+MG+     AD+A++T DNPR+EDP  I A++  G+      +E+ 
Sbjct: 373 VFGCGGDRDRTKRPLMGQAVCRHADVAVLTSDNPRTEDPVAIMADVKPGLAQCDHVVEEP 432

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +R +A+  A+EM    D ++VAGKGHE   ++    K    D + +RE+L 
Sbjct: 433 DRRKALAAAVEMARPGDAVLVAGKGHEDYQVIGT-TKIHFSDQETLRELLA 482


>gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 487

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 166/500 (33%), Positives = 259/500 (51%), Gaps = 32/500 (6%)

Query: 10  DFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   L+N L+I    +  ++ I  V  DSR ++ G +FVAI G + +GH +I QA   GA
Sbjct: 3   NLTSLLNNLTIKASLYVEDKPITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRSGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            AIV             +  +   +VV N+   L+L A+  YG   E +  + VTGT+GK
Sbjct: 63  TAIVCEQ------LPQLLFPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGV 182
           +++A+ + Q+ +++G  +   G  ST++ +  D R     TTP P+ L   L  +  QGV
Sbjct: 117 TTIATLLYQLFRKAGQKA---GLLSTVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGV 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSHG+DQHR +G+    G FTNL RDH+DYH+T  AY + K R F+ L P  +
Sbjct: 174 KYCFMEVSSHGIDQHRTEGLHFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDAL-PSTA 232

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD     ++    N   +  +   +    +   +          + +     + 
Sbjct: 233 FALVNIDDKNGAFML---QNTKAQKKTYALKTHADYKAHIIESRFDG---LLLRINQHEV 286

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L GEF  YN L   G    +G+D    L  +  +  V GRF++   ++ G    VDY
Sbjct: 287 WTKLIGEFNAYNLLAVFGAATLLGVDELEALTLISAIEPVAGRFQY-AVSATGVITIVDY 345

Query: 363 AHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AHT ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D  I+T DNP
Sbjct: 346 AHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVILTSDNP 405

Query: 421 RSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R+E+PE I +E+  G+            +R +AI++  +   K D++++AGKGHET   +
Sbjct: 406 RNEEPEAILSEMEQGVQAQHFHKVQTITDRRQAIQSVCKNAQKGDIVLIAGKGHETYQEI 465

Query: 476 TNGEKKMSVDCDIIREILGL 495
             G +    D +I+RE L L
Sbjct: 466 K-GVRHHFDDFEIVREYLEL 484


>gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
 gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
          Length = 491

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSE+P  I  +++HG  G  +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D +I +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREIAKEAI 483


>gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
 gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
          Length = 482

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 250/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+    P       +      + +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG       ++
Sbjct: 54  PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 228 -PKSAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 482

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 250/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+    P       +      + +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG       ++
Sbjct: 54  PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 228 -PKSAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|303240798|ref|ZP_07327311.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
 gi|302591686|gb|EFL61421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
          Length = 484

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/495 (33%), Positives = 256/495 (51%), Gaps = 26/495 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI  L I  +      ++N ++ DSR  ++G +FV + G K DGH FIPQAI  G  
Sbjct: 3   LKELIKDLEIVDVTGDLNLEVNTIAYDSRKTRSGSLFVCVEGFKADGHKFIPQAIENGTR 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A++V            +     ++ VD+TR  L+  A + +G      N++ VTGT GK+
Sbjct: 63  ALLVQREVE-------VPEGITVIRVDDTRYALASVADKFHGHPSGDFNLVGVTGTKGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +  G  +  IG  S  I         TTP    L +    +  + V  V 
Sbjct: 116 TTTYMIKSILEMYGQKTGLIGTISNKIGDEVLPTDRTTPESYDLQELFGEMVEKQVNSVV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LD HR+   +   G FTNL RDH+D+H+T + Y  AK++LF+         +I
Sbjct: 176 MEVSSHALDLHRVSCSEFDIGVFTNLSRDHLDFHKTFENYLAAKIKLFK----MCKKGLI 231

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             D  Y ++V++ A    C V + G      I    +    +  +  +       D    
Sbjct: 232 NVDSEYGRKVVENAE---CEVYTFGIDSSADIRAVDIVKHPDSVEFKVITPWFTGDIAVN 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+F VYNAL A G C  +GI    + + L+ +  VPGR E V T +    I +DYAH+
Sbjct: 289 IPGKFSVYNALGAIGSCALMGIPLEYIQKGLKNVT-VPGRAEVVQTGTD-YTIIIDYAHS 346

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +SLE IL  ++     R+I +FGCGGDRD+ KRPIMG+I+  LAD  ++T DNPR+E+P
Sbjct: 347 PDSLENILTTVKGYAPARVISLFGCGGDRDKTKRPIMGEISGKLADFTVITSDNPRTEEP 406

Query: 426 EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             I  +I  GI      +I   +R EAI+ A++    +D++V+AGKGHET  ++ +    
Sbjct: 407 AAIINDIEEGIKKTTSAYITIVDRREAIKYAMQHAQPKDIIVLAGKGHETYIMLNDKTIH 466

Query: 482 MSVDCDIIREILGLI 496
              + +++REIL  +
Sbjct: 467 -FDEREVVREILDEM 480


>gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 496

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 231/481 (48%), Gaps = 31/481 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR +Q G +F+ + G+  DGH +  QA  QGA A+VV                 
Sbjct: 24  TGIAIDSRKVQPGDLFICLPGHTVDGHDYARQAEEQGAAALVVER--------WLDDVAL 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P L V ++R+ +++     +G     +  + VTGT+GK++    +++I Q  G  +  IG
Sbjct: 76  PQLKVKDSRQAMAVLGGVFFGAPSSRLKVIGVTGTNGKTTTTYLIERILQDQGRETGLIG 135

Query: 149 PT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 +        TTP  + L + L  ++  G  +  +E SSH L Q R+ G +    
Sbjct: 136 TIQRRFAGQTYPMSGTTPESLELQQYLHDMAEGGGEYCVMEVSSHALAQGRVKGTRFRTA 195

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEVMKRA 260
            FTNL +DH+DYH+T   Y  AK   F  L         + S A++  DD  S    K+ 
Sbjct: 196 VFTNLTQDHLDYHKTMDEYRWAKGLFFSRLGNTYAENPEERSYAVLNVDDPASAYFAKQT 255

Query: 261 HNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V++ G  Q   +    +          +       D    + G+F VYNAL A 
Sbjct: 256 A---AEVITYGVEQDADVRASNISITARGTSFHVDTFRGSADISLRMVGKFNVYNALAAI 312

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +  GI    +   LE +  V GR E V    +   + VDYAHT + LE +L+ +   
Sbjct: 313 SATLLEGIPLEQIKASLESVKGVEGRVEAVD-EGQDFAVIVDYAHTPDGLENVLRTVNEF 371

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436
             GR+I VFGCGGDRD+ KRPIMG+IA   AD  +VT DNPR+EDP+ I  +I  G+   
Sbjct: 372 AKGRVICVFGCGGDRDRKKRPIMGQIAAKYADYVLVTSDNPRTEDPQAILRDIEQGLVED 431

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 +    +R EAI  AIEM +++DV+++AGKGHET  ++ +       D  + +E 
Sbjct: 432 GVDQARYELIVDRREAIGKAIEMASREDVVLIAGKGHETYQLIGSKVLD-FDDRIVAKEA 490

Query: 493 L 493
           +
Sbjct: 491 I 491


>gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrospira platensis str. Paraca]
          Length = 498

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/501 (33%), Positives = 250/501 (49%), Gaps = 16/501 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+  +       L        + +I  ++++S   + G +F+ + G + DG  F 
Sbjct: 1   MKLKDLLNPNL------LPPEYHPALDMEITGLATNSHACKPGDLFLGMPGTRVDGGDFW 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NI 117
           P AIA GA A +VS + +      T     P ++   +  K  +  A+  Y    +   +
Sbjct: 55  PSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFYNHPAQTLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ +       +  +G   T    F +    TTP  + L   L+ 
Sbjct: 115 VGVTGTNGKTTTTHLIEFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQLAD 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G     +E SSH L Q R+ G       FTNL +DH+DYH T   YF AK  LF +
Sbjct: 175 AVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALLFSD 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   AII ADD Y K++M R         SV      I    +       Q  +   
Sbjct: 235 DYLQ-GKAIINADDDYGKKLMARLGGDRVWSYSVSDPSTDIWADSLVYQPTGIQGVLHTP 293

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RG 355
                F  PL G++ + N L A G  +A+G+D + +++ L     VPGR E V  +  + 
Sbjct: 294 MGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVKISPEQN 353

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DL+D+A+V
Sbjct: 354 ITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLSDLAVV 413

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +++ GIP     I  G+R +AIRTAI      D +++AGKGHE  
Sbjct: 414 TSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAINEAQPGDGVLIAGKGHEDY 473

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   EK    D +  R+ L
Sbjct: 474 QILGT-EKVHFDDREQARDAL 493


>gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
 gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|46576983|sp|Q81WC7|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
          Length = 491

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIAMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREVAKEAI 483


>gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
 gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
          Length = 489

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 187/489 (38%), Positives = 269/489 (55%), Gaps = 11/489 (2%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L+  + +  +     +I+ +++DSR ++ G +F A+ G K DG  FI  A+  GA A
Sbjct: 5   LSTLLAAVGLPALPG-NPEISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAAA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +         T     P+++  N R  L+L A+ L G  P++++A+TGT+GK+S A
Sbjct: 64  VLAPADTQWP----TDVPACPLVLASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTA 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTHVSV 187
            F++QI    G  +  IG      +           TP P+ LA  L+ L+  G  HV++
Sbjct: 120 DFMRQIWALQGFKAAAIGTLGLTGAEETSISFPALTTPDPVALANGLAALTQAGFQHVAL 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL+Q RLDG+ L A  FTNL RDH+DYH T +AY  AK++LF+ LLP+ + A   
Sbjct: 180 EASSHGLEQGRLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAAN 239

Query: 248 ADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           AD      + +   A     R+  VG  G  + L    A+   Q++TI  +G+    L P
Sbjct: 240 ADMDAQTLQAICAIAARRNLRLRLVGEHGTTLRLVAYNALPAGQELTIEHDGRTSTVLLP 299

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG FQ  N L+A  L      +   +L  L  L  V GR E       G   YVDYAHT
Sbjct: 300 IPGRFQADNVLLAVALAAQDNAEITRILPLLPHLKGVRGRLERATVLPNGACAYVDYAHT 359

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L ++R    G++IVV G GGDRD GKRP+MG+ A+  ADIAI+TDDNPR+E+P
Sbjct: 360 PDALARLLASLRPHARGKLIVVLGAGGDRDSGKRPLMGQEAVKGADIAIITDDNPRTENP 419

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             IRA+I  G P  +E  +R +AI  A+ ML   DVLVVAGKGHE   I+ N       D
Sbjct: 420 ASIRADIKTGAPQALEIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGN-TILPFDD 478

Query: 486 CDIIREILG 494
             ++R + G
Sbjct: 479 AAVLRTLAG 487


>gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
 gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
          Length = 493

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 160/471 (33%), Positives = 248/471 (52%), Gaps = 9/471 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA++G   DG  FI  AI QGA A +  +       +  I  +
Sbjct: 25  VSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   + LS  A ++Y     +++ VTGT+GK+++   + Q  +     +  +G 
Sbjct: 85  VPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDHKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  Q    TT + + + K LS L++Q  T+ ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF +   +   AII  DD    +   +  NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLGLFTQ--HQCERAIINVDDEVGHQWASQLSNAIAVSL 262

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +    I   +V    +   +    +        PL GEF   N ++A    +++G 
Sbjct: 263 KANTEFESAIWATEVSYAESGITIKFDGKFGSGKLHAPLIGEFNATNLMLAFATLLSLGK 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   +LE   +L  V GR E   T  R  ++ VDYAHT ++LE  L+ +R    G++  +
Sbjct: 323 EKQALLETAGQLQPVLGRMELFQTEDR-AKVVVDYAHTPDALEKALQALRVHCEGQLWAI 381

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP +I  +++ G+      I + +
Sbjct: 382 FGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDMLAGLSKPAEAIVQHD 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           R +A+  AIE  +  D++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 442 RFKALSYAIENASPNDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 491

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIAMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D ++ +E +
Sbjct: 461 ETYQIIGK-DXHHFDDREVAKEAI 483


>gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 487

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 236/485 (48%), Gaps = 14/485 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G     +      R +AI   I   N  DV+V+AGKGHE    + +G++    D    
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 475

Query: 490 REILG 494
            + L 
Sbjct: 476 AKALA 480


>gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 491

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/505 (30%), Positives = 247/505 (48%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L        ++ L  FP+  +E  +I  + +DSR ++ G +FV + G   D H F
Sbjct: 1   MKLHTL--------VSCLHDFPVVSKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
                         +   +       I  + P+++V NT + L++ A   YG+    +  
Sbjct: 53  ---------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + 
Sbjct: 104 IGITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAK 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +
Sbjct: 164 MVEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQ 223

Query: 237 L-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290
           L       +E  A++  DDA + E M+   +    V++ G      +  K +        
Sbjct: 224 LGNSYNHNREKYAVLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTT 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V 
Sbjct: 281 FTLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A
Sbjct: 341 -GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             AI T DNPRSEDP  I  +++HG  G  +    +R EAI  AI      D++++AGKG
Sbjct: 400 THAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET  I+   +     D ++ +E +
Sbjct: 460 HETYQIIGK-DVHHFDDREVAKEAI 483


>gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 497

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/505 (31%), Positives = 257/505 (50%), Gaps = 26/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E++    I     +E  +  ++++S+ ++  + F AI G   DGH FI
Sbjct: 1   MKL-------LKEILTDEKII-YGNQETAVEGITNNSKKVEKNYAFFAIKGTSVDGHNFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  I +     ++        N  +++ DN RK L+L ++R Y    E +  +
Sbjct: 53  DEAIKNGASVIFIEDEKYIESLKG---KNITVVLTDNGRKSLALASNRFYDNPSEKLKVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           A+TGT+GK++ ++ + Q  + +G     IG  +  +      +  TTP P+   K L  +
Sbjct: 110 AITGTNGKTTTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V  E SSH  DQ+R+   K   G FTNL +DH+DYHQT + YF AK R+FE++
Sbjct: 170 KDKGADVVVAEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQI 229

Query: 238 --LPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
               KE+   I  DD + + ++    N       ++++ G   +   +        + + 
Sbjct: 230 DKFNKEAIYSINVDDEHGRRILDYLKNHLKVNDDKIITYGKTSEDFKILDYRLSLFETEF 289

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   +         L G F +YN        I  G D   + E    L  + GRFE +  
Sbjct: 290 SYKYKDTLSKIKTKLRGVFNIYNLSATVSFLIKDGFDLKFLEEKALHLKPIKGRFEVI-- 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +G  + +DYAHT ++LE ILK++  I   RII VFG GG+RD+ KRP+MG+ A  L+D
Sbjct: 348 EGQGFIVVIDYAHTPDALENILKSLNEIKENRIITVFGAGGNRDKTKRPLMGETAESLSD 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + I+T DNPR+EDP  I  +I+ GI      I   +R +AI  AI +  ++D++++AGKG
Sbjct: 408 VVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKG 467

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   I+ + +     D ++++EI+
Sbjct: 468 HENYQIIGD-KILHFDDAEVVKEII 491


>gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/504 (30%), Positives = 248/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA AI+        D      +    + V ++   +   A+  YG       ++
Sbjct: 54  PAAIQKGATAILCE------DIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 227 MPKNAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGRVIESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAI-RSPKGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P++I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQEIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D ++++EI  
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIFN 482


>gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
 gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
          Length = 492

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/475 (34%), Positives = 242/475 (50%), Gaps = 23/475 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR ++ G+IF AI G   DGH FIP+A+A+GA  IV             +    
Sbjct: 23  RGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAERKVE-------VPPGV 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            + VV NTR+ L+  A++ YG     +  + VTGT+GK++    +  + Q  G     IG
Sbjct: 76  VLEVVPNTRRALAWAAAQFYGHPSRKLHVVGVTGTNGKTTTTHLLSSLYQEQGKKVGLIG 135

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +   A     TTP  + L   L+ +  +G+    +E SSHGL   R+ G+     
Sbjct: 136 TLYVKLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEVSSHGLALERVTGVAFDVA 195

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAG 264
            FTNL +DH+D+H+  + YF  K RLF ELL   P +  A+I  DD Y + +        
Sbjct: 196 VFTNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINRDDPYGQRLTSLCRG-- 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             VL+ G +   +H           ++  S  G+  +    LPG F VYNAL A  + + 
Sbjct: 254 VEVLTYGLKEGEVHALDYELRPEGTRLLASAGGERVEVKLSLPGIFNVYNALAALAVAVG 313

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+   L    L ++  VPGR E +    +   + VDYAHT + L  IL+  R I+ GR+
Sbjct: 314 EGMPLDLAARALSRVQAVPGRCERID-EGQDFTVLVDYAHTPDGLLNILRTAREISRGRV 372

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------G 438
           IVVFGCGGDRD  KRP+MG+IA + AD+ +VT DNPRSEDP  I   I  G+        
Sbjct: 373 IVVFGCGGDRDPSKRPVMGRIAGEYADLVVVTSDNPRSEDPVAIMQAIAQGLAQVAPPSR 432

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++   +R  AI+ A       D++++AGKGHE   I+ + ++    D ++ R +L
Sbjct: 433 YLLIEDREAAIKEAFARARPGDIVILAGKGHENCQIIGD-KRIPFDDREVARRLL 486


>gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 492

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 160/502 (31%), Positives = 236/502 (47%), Gaps = 25/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDDG---KFTWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEEATHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E++ R       +   GY   +   I +    A  +  +     
Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VLE L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVERAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +  G K    D ++  + L 
Sbjct: 469 QDM-QGVKHHFSDFEVAEKALA 489


>gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
 gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
          Length = 491

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA + E M+   +    V++ G      +  K +         
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V  
Sbjct: 282 TLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI T DNPRSE+P  I  +++HG     +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAIYTSDNPRSEEPGAILDDMVHGAIGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   +     D +I +E +
Sbjct: 461 ETYQIIGK-DVHHFDDREIAKEAI 483


>gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
 gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
          Length = 485

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/504 (33%), Positives = 256/504 (50%), Gaps = 33/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+       IN  +       +  I  ++ DSR I+AG +FVA+ G + DGH FI
Sbjct: 1   MKLTDLLKGVKTLNINGNA-------DIDIAGINIDSRKIKAGHLFVAVKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA+A++V       D    ++ +   + V +T   +   A+  YG   + +  +
Sbjct: 54  NKAIELGAKAVLVE------DMPTDLKEDVTYVQVASTETEVGKIATIFYGNPTKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     I      I   A+    TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKVGLISTVCNYIDDEARPTDHTTPDPIELNQLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  +  +E SSH + QHR+ G+    G FTNL RDH+DYH+T + Y NAK   F+ L
Sbjct: 168 VAAGCEYAFMECSSHAIHQHRIGGLHFEGGVFTNLTRDHLDYHKTFENYRNAKKMFFDSL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K + AI  ADD      M    N    + +   Q       K+   H  + + + V+G
Sbjct: 228 -SKNAFAITNADDKNG---MIMVQNCKANIKTYSMQRMADFRAKIIECHF-EGMYLEVDG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+        G+F V N L   G  I +G     +L  L  L  V GR + V +   G  
Sbjct: 283 KEVGV--QFIGKFNVSNLLAVYGTAIMLGKSQDDILLALSTLKSVNGRLDPVHSPE-GFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++LE +L  I  +    +G++I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 340 AIVDYAHTPDALENVLGAIHDVLEGKNGKVITVCGAGGNRDKGKRPLMAQEAVKQSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EA+RTA  M  K DV++VAGKGH
Sbjct: 400 LTSDNPRFEDPQAIIDDMVAGLDANQRKKVLTIVDRREAMRTAAMMAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +++REI 
Sbjct: 460 EDYQDI-QGVKHHFDDHEVLREIF 482


>gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
 gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
          Length = 484

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/505 (31%), Positives = 254/505 (50%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I  ++        ++I+ ++ DSR I+ G IF+A+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDMA--------QEISGINMDSRLIEPGHIFIAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I      I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F+ 
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDS 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK + A+   DD      +    N   +V +   +       KV     +  +   ++
Sbjct: 227 L-PKTAFALTNLDDKNG---LVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGML---LD 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  +    G +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    +  G K    D +++R+I  
Sbjct: 459 ENYQEIK-GVKHHFDDKEVLRDIFA 482


>gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 493

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 165/505 (32%), Positives = 257/505 (50%), Gaps = 25/505 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+       +NQ+          +I+ ++ DSR +  G +FVAI G+  DG  FI
Sbjct: 2   MQLSELLLPWCE--LNQV---------VEISSMTLDSRKVTTGCLFVAIKGHAVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENIL 118
           P AI QGA A++  S    +  + +    TPI+ +D     LS  A R Y   +    ++
Sbjct: 51  PVAIKQGASAVLAQSDEVNKTGTISFLDQTPIIYLDALSIKLSAVAGRFYHAEQRKMQLV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++  + Q     G  +  +G T   + +  +    TT SPI + + L+ L
Sbjct: 111 GITGTNGKTTISQIIAQWATLLGKPAGVMGTTGNGLLTDLKPALNTTGSPIEIQQTLTDL 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G    ++E SSHGL Q R++ +   A  FTNL RDH+DYH     Y  AK  LF   
Sbjct: 171 ENIGAKLTALEISSHGLVQGRVNALNFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSH 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTI 293
            PK S   I ADD      +K   NA    L+ G    + GK +    V    +  Q+++
Sbjct: 231 SPKYSI--INADDTVGASWLKELPNAVGVSLNEGNLSFHSGKKVFATSVIYSTDGIQISL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + +    D   PL G F   N LVA    +++G D   + +   KL  V GR E   +  
Sbjct: 289 NSDWGTADLSVPLIGAFNANNILVAFATLLSLGYDITELADAAPKLTAVIGRMELFSSEG 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              ++ VDYAHT ++L+  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD+ 
Sbjct: 349 N-AKVVVDYAHTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I++DDNPRSEDP  I  +++ G+           R +A + A+   +K D++++AGKGHE
Sbjct: 408 ILSDDNPRSEDPSLITKDMLAGLNQPDIAHVIHQRFDACQFALSQASKHDIILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
              ++       S D +  +++LGL
Sbjct: 468 EYQVLATETIHYS-DRETAQKLLGL 491


>gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
 gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
          Length = 482

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/507 (30%), Positives = 253/507 (49%), Gaps = 38/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       +  +   E+ I  V+ DSR + AG +F+A+ G + DGH +I
Sbjct: 1   MKLTELLKAIQP-------VQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI QGA A++        D       +   + V ++   +   A+  YG       ++
Sbjct: 54  PTAIEQGAIAVLCE------DMPEEPNPDITYIQVKDSENAVGKVATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKAL 174
            VTGT+GK+++A+ +    +  G     +G  ST+ ++  D       TTP P+ L + L
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYK---VGLISTVCNYIDDQPVPTEHTTPDPVTLNRLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F
Sbjct: 165 GEMADSGCKYAFMEVSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++ +PK + ++   DD      +    N   RV +   +       KV   H +  +   
Sbjct: 225 DD-MPKSAFSLTNLDDKNG---LVMTQNTRSRVYTYSLRSLSDFKGKVLESHFEGML--- 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +
Sbjct: 278 LDFNNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFDSI-RSPK 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D 
Sbjct: 337 GITAIVDYAHTPDALVNVLNAIHDVLAGRGKVITVVGAGGNRDKGKRPIMAKESARLSDR 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR E+P+ I  +++ G+        I   +R  AI+TA  +    DV++VAGK
Sbjct: 397 VIITSDNPRFEEPQDIINDMLAGLDKDDLEKTISITDRKYAIKTACLLAQPGDVILVAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           GHE    +  G K    D ++++EI+ 
Sbjct: 457 GHENYQEIK-GVKHHFDDKEVLKEIMN 482


>gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 481

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 247/501 (49%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  ++    P       +  +   E +I  V  DSR +    +FVAI G + DGH FI
Sbjct: 1   MTLSSILKNVKP-------LSVVGNAEVEITGVDIDSRKVGEEHLFVAIKGTQVDGHTFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+AQGA A++  +          +      + V++T   +   A+  YG+  + +  +
Sbjct: 54  DKAVAQGATAVLCET------MPTQLPQGVTFVQVESTEDAVGPVATMFYGEPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +      I   A     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH + Q R+ G+    G F+NL RDH+DYH+T + Y NAK   F+ +
Sbjct: 168 VEAGCEYVFMECSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFFD-M 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ AI  ADD      M    N    V +   +       K+   H  + + + + G
Sbjct: 227 LPKQAFAITNADDKNG---MVMVQNTRAAVKTYSTRSMADFKAKILECHF-EGMYLEING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +        G+F V N L      + +G     +L  +  LH V GR + + ++  G  
Sbjct: 283 AEVGV--QFIGKFNVSNLLAVYATAVMLGKRPEDILLVMSTLHSVNGRLQPL-SSPEGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +L  I  +    G++I V G GG+RD+GKRP+M   A+  +D  I+
Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR EDP+ I  +++ G     +   I   +R EAIRTA  M  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEDPQAIINDMLAGLNAQQMKKVISIVDRREAIRTACMMAQKGDVVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIRE 491
               +  G K    D ++++E
Sbjct: 460 DYQEIE-GVKHHFDDKEVVKE 479


>gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
 gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
          Length = 492

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/502 (32%), Positives = 233/502 (46%), Gaps = 25/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLQHAIINVDDGYGAELAGRLKKDCLDLAVYSYGFSEHADIRITNFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL  L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLAVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P       +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPNPERVEVDRAVAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             V  G K    D +   + L 
Sbjct: 469 QDV-QGVKHHFSDFETAEKALA 489


>gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 513

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/503 (31%), Positives = 244/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADD  S  + K        V++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQK---ATAAHVITFGIKQQADFKASNIRITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGK
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQVIGD-EVIDFDDRVEAR 481


>gi|118590897|ref|ZP_01548297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
 gi|118436419|gb|EAV43060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
          Length = 489

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 199/484 (41%), Positives = 275/484 (56%), Gaps = 3/484 (0%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +      P     RKI  +++DSR +Q G++F A  G   DG  F P A A      +
Sbjct: 4   EYLAAGLTLPEAAGARKITGLTADSRKVQPGFLFAAFKGVSVDGTKFAPDAAAA-GAIAI 62

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           + +  +  +  A +     ++     R+  +  A+R YG  P+ I+AVTGT+GK+SVA F
Sbjct: 63  LCAEDAAAEVRALVPETVAVVSAVEPRQVFAKMAARFYGAQPDTIVAVTGTAGKTSVAHF 122

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +QI Q +G  +  +G    I         LTTP P+ L K L+ L  +GV H ++EASS
Sbjct: 123 ARQIFQAAGHPAASLGTLGLIKPDGESYGGLTTPDPVALHKQLAELEDEGVNHAALEASS 182

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ+RLDG++L A +FTNLGRDH+DYH T + Y NAK+RLF ELLP     ++   + 
Sbjct: 183 HGLDQYRLDGVRLTAAAFTNLGRDHMDYHPTIEHYLNAKLRLFAELLPAGGTVVLDPGEK 242

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           Y+  VM  A   G  V +VG  G+ + L  +  +   Q++TI     ++    PL G FQ
Sbjct: 243 YADRVMAVAQERGLPVFTVGETGRNLTLTGLRPVGAGQELTIQSVRGEYKVTLPLIGRFQ 302

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL+AAGL I+ GID+   L  LE L   PGR E  G    GG I+VDYAH  ++L+ 
Sbjct: 303 VSNALIAAGLAISAGIDTGTALRALENLKGAPGRLELAGRTPAGGLIFVDYAHKPDALDN 362

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L  ++    G++ VV G GGDRD GKR +MG++A   AD+ IVTDDNPRSEDP  IR  
Sbjct: 363 ALVALKPFARGKLSVVIGAGGDRDPGKRELMGEVAARRADLVIVTDDNPRSEDPAAIRKA 422

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           ++ G PG IE G+R EAI   +  L   D+L VAGKGHET  IV +       D + ++ 
Sbjct: 423 VMSGAPGAIEIGDRYEAIAEGVRRLKDGDILCVAGKGHETGQIVGD-TVIPFSDHEAVKR 481

Query: 492 ILGL 495
            + L
Sbjct: 482 AISL 485


>gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halanaerobium praevalens DSM 2228]
          Length = 486

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 258/501 (51%), Gaps = 27/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  ++ K+    I   +I      +++I+E+  DSR I+ G +F+AI G K DGH +I
Sbjct: 1   MQLNKIL-KNINYEIKAGNI------KKEISEIKYDSRAIKTGNLFIAISGFKIDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
            QAI  GA AI++     +         +   L V+N+R+ +S+ A   +        ++
Sbjct: 54  SQAIENGATAIIIEKELEV------YEKDITYLKVENSRQVMSILAKNFFDNPLKEIKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  + +I Q+    +   G  S I  S    +  TTP  + L +  + +
Sbjct: 108 GITGTNGKTTTAYLLYKILQKYAGQAALFGTISNIIGSETLSSNRTTPESLDLYRYFAQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G+ +  +E SSH LD +R++ I   A  FTNL  +H+DYHQ+   Y   K RLF +L
Sbjct: 168 KKKGIKYGVMEVSSHALDLYRVESIDFEAAIFTNLSPEHLDYHQSLDNYREVKSRLFSQL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    AII ADD  S+ + K++       LS     K   L        +  +     G
Sbjct: 228 KP-NKYAIINADDPNSEYIKKKSEAQN---LSYSLDTKSADLYTTEFKLKQTGLEYKTGG 283

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   +F   L G F +YN+L      + +GI+  ++ + L     VPGRFE +    +  
Sbjct: 284 KLVANFKLNLGGLFNIYNSLAVVLTALVLGIEKNIIKKALADFDSVPGRFEIID-QGQKF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           ++ VDYAHT +++E ILK    I   ++I++FGCGGDRD+ KRP+M  +A   AD  I++
Sbjct: 343 QLIVDYAHTPDAMENILKAALNIKKNKLIILFGCGGDRDRSKRPLMAALAEKYADSIIIS 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +DNPRSE P KI  EI  G       +    +R + I+ AIE+  K D++++ G+GHE  
Sbjct: 403 NDNPRSESPTKIFKEIEKGFSSNFTNYSIIPDRKKGIKAAIELAKKDDLVLLLGRGHEKY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            ++   + ++  D  +  + L
Sbjct: 463 QVIKERKIEL-DDRQVAIQAL 482


>gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
 gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
          Length = 484

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 253/505 (50%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I   S        ++I+ ++ DSR I+ G IFVA+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDAS--------QEISGINMDSRLIEPGHIFVAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I      I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F+ 
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDG 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK + A+   DD      +    N   +V +   +       KV     +  +   ++
Sbjct: 227 L-PKTAFALTNLDDKNG---LVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGML---LD 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGAACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  +    G +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    +  G K    D +++R+I  
Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIFA 482


>gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
 gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
          Length = 495

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/481 (32%), Positives = 241/481 (50%), Gaps = 17/481 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+ ++ E+  DSR    G +FVAI G++ DG  FI QAI  GA A++  +    Q  + +
Sbjct: 19  RDIELQEMILDSRLANTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVS 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
              N P++      K LS  A R Y    +   ++ VTGT+GK+++A  + Q  Q  G +
Sbjct: 79  FEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHT 138

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G     +    ++   TT S I +  +L     QG    ++E SSHGL QHR++ +
Sbjct: 139 SAVMGTIGNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVSSHGLVQHRVEAL 198

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              AG FTNL RDH+DYH T + Y  AK RLF EL  +     +  DD      +     
Sbjct: 199 TFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKI--LNVDDEIGATWLIELSK 256

Query: 263 AGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               V++V  +         ++    +        +  +    +     PL G F V N 
Sbjct: 257 DDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNGILSSPLIGGFNVSNL 316

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+     +++G D   +L  + +L  V GR E +    +   + VDYAHT ++LE  L++
Sbjct: 317 LLVLATLLSLGYDIGKLLATVRQLTGVCGRMEMLSAKHK-ATVIVDYAHTPDALENALQS 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                 G++  +FGCGGDRD+GKRP+M  IA   AD  IVTDDNPR+E+PE+I  +I+ G
Sbjct: 376 AAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNPRTENPEQIMQDILTG 435

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                       R +AI+TA++   + DV+++AGKGHE   I+    K    D +I+++ 
Sbjct: 436 FQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGT-TKYHFSDQEIVKKY 494

Query: 493 L 493
            
Sbjct: 495 F 495


>gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 488

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 264/495 (53%), Gaps = 26/495 (5%)

Query: 11  FPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             +LI  L +     +  +  I +V+  S++++ G+ F+ I G K DGH +I +AI +GA
Sbjct: 3   INKLIEGLEMIETNIKNFDEDIKDVAYSSKNVEDGFAFICIKGFKTDGHEYIDEAIERGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
           + I+V   Y     ++ ++     +   NTRK LS+ ++  +    +N  ++ VTGT+GK
Sbjct: 63  KLIIVDEFYD----TSKLKDKVLFIKTSNTRKALSVISANFFEHPSKNFLLIGVTGTNGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S    ++ I ++SG     IG     I     + + TTP    L K    +  + V  V
Sbjct: 119 TSTTFMIKSILEQSGHKVGLIGTVKNMIGQKEIEAKHTTPESYDLQKLFFEMKKENVDSV 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L+ HR+D      G FTNL +DH+D+H T + YF AK++LFE         +
Sbjct: 179 VMEVSSHSLELHRVDCCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFE----MSKKRV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS--VEGKDFDF 302
           +  DD + +++++   +     ++ G   K  +    V    NK Q  +           
Sbjct: 235 VNVDDEWGRKIIRIYPD----SVTYGINSKADVCAMSVKLYVNKNQFELRQLDNDNKEQV 290

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG F VYNAL AA    A+GID   +   LE +  +PGRFE V +N +   I +DY
Sbjct: 291 TLNIPGIFSVYNALAAASCAYALGIDLKTIKAGLESVKAIPGRFEIVESNDK-FTIVIDY 349

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT DNPR+
Sbjct: 350 AHTPDGLLNLMKTVDEVAKGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTSDNPRT 409

Query: 423 EDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           EDP KI  +I+ G+      ++   +R EAI+ AI+   + D +V+AGKGHET  I+ + 
Sbjct: 410 EDPIKIIEDILVGLQKTNAEYVVIPDRFEAIKYAIKNAKENDFIVLAGKGHETYQILKDR 469

Query: 479 EKKMSVDCDIIREIL 493
                 + +++R IL
Sbjct: 470 TIH-FDEREVVRSIL 483


>gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
 gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
          Length = 482

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/504 (30%), Positives = 248/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA AI+        D      +    + V ++   +   A+  YG       ++
Sbjct: 54  PAAIQKGATAILCE------DIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 227 MPKNAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGRVIESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAI-RSPKGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P++I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQEIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D ++++EI  
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIFN 482


>gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga ochracea DSM 7271]
 gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea
           DSM 7271]
          Length = 486

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 162/505 (32%), Positives = 253/505 (50%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+        N      +   ++ I  V  DSR  + G +FVAI G + +GH +I
Sbjct: 1   MNLKTLLK-------NITIKTSLYVEDKDITSVCFDSRKAEKGSMFVAITGTQSNGHEYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            QAI  GA AIV                    +VV N+   L+L A+  YG   E ++  
Sbjct: 54  DQAIRSGATAIVCEQ------LPQQPLPGVSYIVVPNSHSALALIAANFYGNPSEKLILV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + Q+ +++G  +  +   +  +     +   TTP P+ L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYQLFRKAGQKAGLLSTVAVYVDDQCFEATHTTPDPLQLNHYLHLM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV +  +E SSHG+DQHR +G++   G FTNL RDH+DYH+T  AY + K R F+ L
Sbjct: 168 VEQGVKYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDAL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A++  DD     +++    A  +  ++     +   K          + + +  
Sbjct: 228 -PATAFALVNNDDKNGAFMLQN-TKAQKKTYALKTHADY---KAYIIESRFDGLLLRIN- 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L GEF  YN L        + ID    L  +  +  V GRF++   ++ G  
Sbjct: 282 -QHEVWTKLIGEFNAYNLLAVYATATLLSIDEIEALTLISAIEPVAGRFQY-AVSATGVI 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D  I+
Sbjct: 340 TIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+E+PE I +E+  G+            +R +AI++  +   K D++++AGKGHE
Sbjct: 400 TSDNPRNEEPETILSEMQQGVQPQYFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
           T   +  G +    D +I+RE L L
Sbjct: 460 TYQEIK-GVRHHFDDFEIVREYLEL 483


>gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 489

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 191/489 (39%), Positives = 270/489 (55%), Gaps = 11/489 (2%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L+  + + P+     +I+ +++DSR I+ G IF A+ G K DG  FI  A+  GA A
Sbjct: 5   LSTLLAAVGL-PILPENPEISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAAA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +         T     P+++  N R  L+L A+ L G  P+++ A+TGT+GK+S A
Sbjct: 64  VLAPTDTQWPTGVPT----CPLILAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTA 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTHVSV 187
            F++QI    G  +  IG      +           TP P+ LA  L+ L+  G  HV++
Sbjct: 120 DFIRQIWALQGFKAAAIGTLGLTGAEDTSISFPALTTPDPVALANGLAALTQAGFNHVAL 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL+Q RLDG+ L A  FTNL RDH+DYH T +AY  AK++LF+ LLP+++ A   
Sbjct: 180 EASSHGLEQGRLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAAN 239

Query: 248 ADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           AD      + +   A     R+  VG QG  + L    A+   Q+++I   G     L P
Sbjct: 240 ADMDAQTLQAIRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLP 299

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG FQ  N L+A  L      + A +L  L  L  V GR E       G   YVDYAHT
Sbjct: 300 IPGRFQADNVLLAVALAAQDDAEIADILPLLPHLKGVRGRLERATVLPNGACAYVDYAHT 359

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L ++R    G+++VV G GGDRD GKRP+MG+ A+  ADIAI+TDDNPR+E+P
Sbjct: 360 PDALARLLASLRPHARGKLVVVLGAGGDRDSGKRPLMGQEAIKGADIAIITDDNPRTENP 419

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             IRAEI  G P  +E  +R +AI  A+ ML   DVLVVAGKGHE   I+ N       D
Sbjct: 420 ASIRAEIKAGAPQALEIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGN-TILPFDD 478

Query: 486 CDIIREILG 494
             ++R + G
Sbjct: 479 AAVLRTLAG 487


>gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 482

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 249/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+    P       +      + +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG       ++
Sbjct: 54  PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 228 -PKSAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  +  G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPLGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTISIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
 gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
          Length = 484

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 253/505 (50%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I   S        ++I+ ++ DSR I+ G IFVA+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDAS--------QEISGINMDSRLIEPGHIFVAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I      I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F+ 
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDG 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK + A+   DD      +    N   +V +   +       KV     +  +   ++
Sbjct: 227 L-PKTAFALTNLDDKNG---LVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGML---LD 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGAACLLGKKAEEVLLALSTLRPVAGRFDSL-RSPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  +    G +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    +  G K    D +++R+I  
Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIFA 482


>gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
          Length = 479

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 273/472 (57%), Gaps = 8/472 (1%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +  +  +++DSR ++ GW+F A+ G+K DG  +I  A+ +GA A++ +      D 
Sbjct: 6   IGGADPDVAGMTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLTTP-----DS 60

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            A I    P+++  + R+ L+  A+R Y   PE ++AVTGT+GK+SVA F +QI   +G 
Sbjct: 61  EARIGGRVPLVMDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIWALTGQ 120

Query: 143 SSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G     +    +   LTTP PI L   L  L+ +GVTH ++EASSHGL Q RLDG
Sbjct: 121 RSASLGTLGLMVDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQSRLDG 180

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +++ A +FTNL RDH+DYH +  AY  AK+ LFE ++     A++  D A  +     A 
Sbjct: 181 VRIKAAAFTNLTRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSFASAAG 240

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             G R+LS G + G  + L    A  + Q + + V G+      PL G+FQ +NAL A G
Sbjct: 241 RRGHRILSYGRRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNALAALG 300

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L IA G         L +L  V GR E V   + G  IYVDYAHT ++LE +L  IR  T
Sbjct: 301 LAIATGTPDDQATAALSRLAGVRGRMERVAVLANGAAIYVDYAHTPDALETVLNAIRPHT 360

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           +G++  VFGCGGDRD GKRP+MG +   LAD  IVTDDNPRSEDP  IRA  +   PG  
Sbjct: 361 TGKLWCVFGCGGDRDPGKRPMMGCMVGKLADKPIVTDDNPRSEDPATIRAAALAACPGGE 420

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           E G+R EAIR+A+  L   DVL++AGKGHE    +  GE +   D  + RE 
Sbjct: 421 EIGDRAEAIRSAVSRLGPGDVLMIAGKGHEQGQEIK-GEIRPFDDATVAREA 471


>gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D4]
 gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides dorei 5_1_36/D4]
          Length = 484

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/505 (31%), Positives = 254/505 (50%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I  ++        ++I+ ++ DSR I+ G IF+A+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDMA--------QEISGINMDSRLIEPGHIFIAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I      I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F+ 
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDS 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK + A+   DD      +    N   +V +   +       KV     +  +   ++
Sbjct: 227 L-PKTAFALTNLDDKNG---LVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGML---LD 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  +    G +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    +  G K    D +++R+I  
Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIFA 482


>gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 494

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 238/480 (49%), Gaps = 11/480 (2%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
             +     + ++  DSR I+ G IFVAIVG+  DG  FI +A+AQGA+A+V  ++     
Sbjct: 19  APELASIAVEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVH 78

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            S       P++ V      LS  A R+Y      ++ VTGT+GK+++   + Q     G
Sbjct: 79  GSVEWLDAVPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVG 138

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             S  +G T        +    TT S I + + LS L+     + ++E SS GL Q R+ 
Sbjct: 139 QRSAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEDNAVYTAMEISSLGLVQGRVK 198

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +    G FTNL RDH+DYH T + Y  AK  LF +   K   A+I  DD   K  M   
Sbjct: 199 ALDFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQ--HKCKHAVINVDDEVGKAWMVDL 256

Query: 261 HNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            NA    L    GYQ        V       ++             PL G+F   N LVA
Sbjct: 257 SNAVAVSLLPLSGYQQSVW-TSDVAYAETGIKLAFDGSWGQGQLSVPLIGQFNASNVLVA 315

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +++GID   +++   +L  V GR E     ++  ++ VDYAHT ++LE  L  +R 
Sbjct: 316 FATLLSLGIDKQTLIDTAPQLQPVIGRMELFQVPNK-AKVVVDYAHTPDALEKALAALRV 374

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
             SG++  +FGCGGDRD GKRP+M   A   AD  I++DDNPRSEDP  I  +++ G+  
Sbjct: 375 HCSGKLWAIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSE 434

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                 + +R +A++ A+E     D++++AGKGHE   ++ +     S D +   ++LG+
Sbjct: 435 PEAAFVEHDRYQAVKFALEQAGNNDIILLAGKGHEDYQVLKDKTIHYS-DRESALQLLGI 493


>gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 490

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/489 (34%), Positives = 243/489 (49%), Gaps = 14/489 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ + +   ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+V  +
Sbjct: 3   DLLAPWGLDVPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
                D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++    +
Sbjct: 63  DGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +S  +G     +         TT S + +   L  L  QG T  ++E SSH
Sbjct: 123 AQWAQMLGETSAVMGTVGNGLLGHVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD  
Sbjct: 183 GLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINADDEV 240

Query: 253 SKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  +++   A        + VG+ G ++   +V    N   +       +      L G
Sbjct: 241 GRRWLEQLPQAVAVSMENNIPVGWNGPWLSATQVHYHDNGASIAFDSSWGEGQLESRLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N LVA    +++G     +L     L  V GR E      +   + VDYAHT ++
Sbjct: 301 AFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNALGK-PTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I
Sbjct: 360 LEKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAI 419

Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G+           R EA+ +AI      DV+++AGKGHE   +V N     S D
Sbjct: 420 IADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYS-D 478

Query: 486 CDIIREILG 494
              +  +LG
Sbjct: 479 RVTVARLLG 487


>gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
 gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
          Length = 477

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/505 (30%), Positives = 239/505 (47%), Gaps = 37/505 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLF 59
           MKL +LI KD  E             + +I  ++SD+R  +  G IFV I G   DGH  
Sbjct: 1   MKLYELI-KDVAE---------TSLPDMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDA 50

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
             Q + +G  A+V      L+            ++V +TR    +  S  +G HPE    
Sbjct: 51  AQQMLDKGCAAVVCERDLGLE----------RQIIVTDTRAAFPMLCSAWFG-HPERELE 99

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK+++ + ++++    G     IG     I         TTP P  L +   
Sbjct: 100 LIGVTGTNGKTTITTVIKKVLSGFGFKVGLIGTCQNEIGDKIIPTARTTPEPYDLFELFR 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++ +G  +  +E SS GL+Q R+ G    AG FTNL +DH+D H T + Y+ AK  LF+
Sbjct: 160 KMADEGCKYTVMEVSSQGLEQKRVQGCHFKAGIFTNLTQDHLDVHGTMENYYQAKKMLFD 219

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   AII  DD Y +  +        +  SV  +  F   + V       +     
Sbjct: 220 ----ICDTAIINTDDEYGRRYVTEIP-CPYKTYSVNGKADF-RAEDVMLGTTGVKYVFCD 273

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +  F +PG F V N+L        +G      ++  EK+  V GR E + T  R 
Sbjct: 274 GKVKKNVSFNMPGLFNVSNSLAVIACMEVLGFTPCNTIKEFEKIQGVRGRAEIIPT-GRD 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAHT ++L  +L  I+  + G++  +FGCGG+RD+ KR  M   A + AD  IV
Sbjct: 333 FTVICDYAHTPDALINVLSAIKEGSKGKVKCLFGCGGNRDRTKRAPMAAAAAEHADFLIV 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR EDP+ I  +++ G+ G    ++   +R EAI  AI+   K D++V+AGKGHE 
Sbjct: 393 TSDNPRDEDPDDIINDVLKGLEGKDTPYVRMTDRREAIHWAIKNAEKDDIIVLAGKGHED 452

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+  G K    + +++ + L  I
Sbjct: 453 YQILAGGVKIHFDEREVVADALKEI 477


>gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 488

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/476 (32%), Positives = 240/476 (50%), Gaps = 13/476 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  + E++ DSR  +AG +F+AI G++ DG  +IPQA+  GA A++  +  + Q      
Sbjct: 15  DINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQQHLQVHY 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
               P++      + LS  A   Y    ++  ++ VTGT+GK++ A  + Q  Q  G + 
Sbjct: 75  EQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTG 134

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +    ++   TT S + +  +L+   ++G    ++E SSHGL QHR++ + 
Sbjct: 135 AVMGTIGNGLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESVH 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A  FTNL RDH+DYH T + Y  AK RLF EL       II ADD      +    +A
Sbjct: 195 FSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTEL--DSRYQIIDADDPVGAVWLAEMPHA 252

Query: 264 GCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +   Q  ++    V   H    +       + +   PL G F V N L+   
Sbjct: 253 VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNLLLVTA 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G   + ++  + KL  V GR E +    +   + VDYAHT ++LE  L+  R   
Sbjct: 313 TLLTLGYPLSGLINSVHKLTGVCGRMEILHAPQK-PTVIVDYAHTPDALEKALQAARLHC 371

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437
            G++  +FGCGGDRD GKRP+M +IA  LAD  I TDDNPR+E+P+KI A+I++G     
Sbjct: 372 RGKLWCIFGCGGDRDSGKRPLMARIAEQLADHVIATDDNPRTEEPKKIMADILNGFVHPQ 431

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  R +AI TAI+   + DV+++AGKGHE   I+    K    D ++ R  L
Sbjct: 432 SVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQII-GKTKYHFSDQEVARNYL 486


>gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 487

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 236/485 (48%), Gaps = 14/485 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G     +      R +AI   I   +  DV+V+AGKGHE    + +G++    D    
Sbjct: 417 RPGFTAVDKVRFIEGRGQAIAELIASASADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 475

Query: 490 REILG 494
            + L 
Sbjct: 476 AKALA 480


>gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
 gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
          Length = 491

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR +  G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + ++ +  G  +  IG  +  I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTTSHIMDEVMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFHRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + V    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 IEENVNSAVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYHHDREKYAVLNNDDPVAEEYMR---STAATVITYGIDTHSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    +++ ++KL  VPGRFE V  
Sbjct: 282 TLVTPNESINITMKLIGKFNVYNVLAAVAAGLVSGVPLQTIVDVVKKLTGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A   A 
Sbjct: 341 GGQDYTVIVDYAHTPDSLENVLITAKQFAKGNVYCIVGCGGDRDRTKRPIMAAVATKYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI+T DNPRSEDP+ I  +++ G  G  +    +R EAI  AI     +D++++AGKGH
Sbjct: 401 HAILTSDNPRSEDPKLILDDMLTGAKGNNYEVIIDRKEAIFHAISEAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D +I +E +
Sbjct: 461 ETYQII-GKEVHHFDDREIAKEAI 483


>gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL J1-023]
          Length = 491

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/503 (32%), Positives = 249/503 (49%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+        EL+  + ++  +     ++N+++ DSR +Q G +F+ I G   DGH F
Sbjct: 1   MKLK--------ELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P+L V ++++ +++ A   YG   +   +
Sbjct: 53  ADRAVQLGAVAIIAEKQLDV---------SVPVLYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQ 223

Query: 237 L-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L     L     A++ ADD   KE ++        V++ G  +        +    +   
Sbjct: 224 LGNSYNLSNPKIAVLNADD---KESVRMQTATAAHVITFGIKEPADFSASNIQITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     DF     + G F +YN L A     A+ I     +  +E +  V GRFE V 
Sbjct: 281 FDLKTPVGDFSLKIKMIGNFSIYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVN 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDY+HT +SL  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSEDP  I A++I G+PG   ++   NR +AIR AI M    DV+++AGK
Sbjct: 400 TNPIFTSDNPRSEDPHAIIADMIQGVPGSDSYVVHENRRDAIRYAINMAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQVIGD-EVIDFDDRVEAR 481


>gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae Cit 7]
          Length = 487

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 162/486 (33%), Positives = 237/486 (48%), Gaps = 14/486 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+AI G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLADLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDTF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELTGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD A VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGAWVTDDNPRSESPASIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G     +      R +AI   I   N  DV+V+AGKGHE    + NG+++   D    
Sbjct: 417 RPGFAAVDKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475

Query: 490 REILGL 495
              L +
Sbjct: 476 ASALAI 481


>gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
 gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
          Length = 498

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/504 (32%), Positives = 255/504 (50%), Gaps = 28/504 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  EL+N  S   +    ++ I ++++DSR ++ G +F+ + G   DGH ++ +A+ +G
Sbjct: 2   KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A AI+     S       +     ++ V NTR  +   A   +    +   ++AVTGT+G
Sbjct: 62  AIAIIAEKKIS-------VPEGVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    +  I +++G  +  IG   + I     +   TTP  I L + L  +    VTH
Sbjct: 115 KTTTTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDIIDLQRLLYKMKKAKVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-----EELLP 239
           V +E SSH L   R++G +     F+NL  DH+D+H+T   Y NAK +LF     E  + 
Sbjct: 175 VCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
               A I  DD YS  ++    +   C++ +        + +          +     + 
Sbjct: 235 PNKNACINIDDDYSHIMIDAIKDRKLCKLHTFSMNRDAELKVISTEFTGKNTKFICVYKN 294

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K++     L G F VYN + A    ++ GID   +++ L     VPGRFE +    +   
Sbjct: 295 KEYPVTVKLMGRFNVYNIMAAMSAALSEGIDFNFIIKALTDFTNVPGRFELID-EGQEFS 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE IL   R IT+G+IIVVFGCGGDRD  KRPIMG+IA   +DIAIVT 
Sbjct: 354 VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRPIMGRIAAKYSDIAIVTS 413

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DNPR+EDP  I  +++ G+    EK         +R  AI+ AIE+    D++++AGKGH
Sbjct: 414 DNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIVIIAGKGH 473

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I+ N       D +  R +L
Sbjct: 474 EDYQILKNKTIH-FDDREEARRVL 496


>gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
 gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 489

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/478 (32%), Positives = 235/478 (49%), Gaps = 19/478 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  + +DSR IQ G +F+A  G + DG  +I +A+ + A A+     Y    ++ +I
Sbjct: 20  DVLIKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAAAVF----YEANQYNPSI 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           ++  P++  +N +  +   A+R Y        I+ +TGT+GK+S A F+ Q  Q  G+  
Sbjct: 76  QTKVPLIPFENLQHRIGEIAARFYDDPSCEMEIIGITGTNGKTSCAQFIAQALQSQGIRC 135

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG               TTP PI L +A + +  QG   +++E SSH L Q R++G++
Sbjct: 136 GVIGTLGYGFLGSLHKTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRRVEGVQ 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FT L RDH+DYH   + Y  AK  LF++  P     ++  DDA  K ++    + 
Sbjct: 196 FDIAVFTQLSRDHLDYHGDMENYARAKELLFQQ--PGLHTGVVNCDDALGKRIIAHYRHQ 253

Query: 264 GCRVLSVGYQGKFIHLKKVCA-----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              V       K   +  V A     +     V +     +  F  PL G F + N L  
Sbjct: 254 LTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLFGRFNISNLLAV 313

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +     I     L  L +L  VPGR + V +  +  +I VDYAHT ++LE  L  +R 
Sbjct: 314 LSVLCLCEIPFDKALLELSQLRNVPGRMQVVDSQRQ-PQIIVDYAHTPDALEKALTALRE 372

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              GR+I VFGCGGDRD+GKRP M  +A   AD  I+T+DNPR+E P  I  +I  G   
Sbjct: 373 HCQGRLICVFGCGGDRDRGKRPQMAAVAEQHADQIILTNDNPRTESPLTIIQDIQAGFKN 432

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               + K +R EAIR A++M    D++++AGKGHET   + +       D +  ++ L
Sbjct: 433 KNAVLVKLDRAEAIRYAVQMAAVNDIVLIAGKGHETTQTIADQVLP-FNDVEEAKKAL 489


>gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 487

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 235/476 (49%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G + DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S  +   +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLHSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G     +      R +AI   I   N  DV+V+AGKGHE    + +G++    D
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSD 471


>gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
          Length = 492

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/502 (31%), Positives = 234/502 (46%), Gaps = 25/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   + P L+   +   +         + SDSR I+ G IFVA  G   DG  +I 
Sbjct: 4   KLTPLAETNIPPLLCANAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIS 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAATMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQG-KFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E++ R         V S G+ G   I +    A  +  +     
Sbjct: 230 HGLKHAIINVDDEYGAELIGRLKKDCSDLAVYSYGFSGNADIRIVHFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGRCRTRLLGRFNAQNLAGCIALLCANGYPFDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQNIINDILPAVPTPECVEADRAAAIRYAVERATANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             V  G K    D ++  + L 
Sbjct: 469 QDV-QGVKHHFSDFEVAEKALA 489


>gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 482

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 246/502 (49%), Gaps = 32/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+    P       +        +I  V+ DSR I  G +F+A+ G + DGH +I
Sbjct: 1   MRLSDLLQTIQP-------VRITGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA A++        +    +++    + V ++   +   A+  YG       ++
Sbjct: 54  PAAIDKGAVAVLCE------ELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +    +  G     +      I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+EL
Sbjct: 168 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       KV   H +  +   ++ 
Sbjct: 228 -PKGAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGKVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F  YN L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVRFIGKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAI-RSPKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               +  G K    D +I+ EI
Sbjct: 460 NYQEIK-GVKHHFDDKEILNEI 480


>gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
 gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
          Length = 489

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/494 (32%), Positives = 248/494 (50%), Gaps = 26/494 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL++ +S   ++   ++ I  +  DSR +  G +F  I G   DGH +  QA  +GA 
Sbjct: 4   IRELLDHISPCRVKGDLDQDIKSLEMDSRLVSEGALFFCIRGFTVDGHDYAAQAADRGAV 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A +      +         +   L+V ++R+ ++  A+R Y    + +  + VTGT+GK+
Sbjct: 64  AFLTEEELPV---------DGTQLIVRDSRRAMAQLAARFYNYPSDRMTMIGVTGTNGKT 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV  F+Q + +R+G  +  IG   T +     +   TTP    L K L+ +   G   V+
Sbjct: 115 SVTHFIQDLLKRAGTEAGMIGTMYTELKGIQTETVNTTPESFTLQKRLNEMYLAGAEAVT 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKE 241
           +E SSH L   R+ G       FTNL +DH+DYHQT   Y  AK  LF +L         
Sbjct: 175 MEVSSHALHLGRVHGTAFDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQLGSGGETDAY 234

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF 300
             A+I  DD+Y+  ++  +      V++ G +    +  + +       + TI +  + +
Sbjct: 235 KRAVINVDDSYADIMLGASA---VPVITYGIEKPCDVRAEDLEVSPEGIRFTIRLNQQSY 291

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G F VYNAL A     AIGI+       L +L  V GRFE V T++    + V
Sbjct: 292 PVQLKLAGTFSVYNALAAFAAVYAIGIEPEQAARFLSELPQVRGRFERVETDA-PFHVIV 350

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + LE +++  +  T   + VVFGCGGDRD+ KRP+MGK+A DLAD  I+T DNP
Sbjct: 351 DYAHTPDGLENVIRTAKETTDRPVTVVFGCGGDRDRKKRPLMGKLAEDLADHVILTSDNP 410

Query: 421 RSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           RSE+PE I  +I+ G+       + +R  AI  AI    + +V+V+AGKGHET  I  + 
Sbjct: 411 RSENPEAIIQDILSGMSKDNHTVQTDRKAAITHAIMNATEGEVIVIAGKGHETYQITGDV 470

Query: 479 EKKMSVDCDIIREI 492
                 D  +  E 
Sbjct: 471 TLD-FDDRKVSLEA 483


>gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
 gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
          Length = 508

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/480 (33%), Positives = 235/480 (48%), Gaps = 21/480 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR +  G +FVA+ G   DGH FI  AI  GA A+         +  A    +
Sbjct: 36  ITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEAGAVAVACE------ELPAAYSDS 89

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              LVV + RK L+  +   YG   + ++   VTGT+GK++ A  V  +   SG+++  I
Sbjct: 90  VTWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTTTARLVTSMLNASGVAAGYI 149

Query: 148 GP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I +       TTP P  L      +   G     +E SSH L   R+ G+   A
Sbjct: 150 GTGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVMEVSSHSLVLDRVHGLFFRA 209

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL  +H+D+H+T + Y  AK  LF++L   E  A+I ADD  ++ +  R       
Sbjct: 210 AVFTNLTPEHLDFHETMEEYAEAKRLLFDQL-NAEGFAVINADDPRAEFMAARLAPERVF 268

Query: 267 VLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             S G         +  H     +     +  ++ +G+      PLPG + V N L A  
Sbjct: 269 CCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSMAMQVPLPGAYNVMNMLEAFT 328

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + + +GID A  L  L     + GR E + +  R     VDYAHT ++L+  L+ +R +T
Sbjct: 329 VGVGLGIDPATALRSLAAADAIAGRMERIWSRDRSRCAVVDYAHTPDALQKALEALRAVT 388

Query: 381 SGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                + VVFGCGG+RD+ KRP MG+IA +LAD  I+T DNPR E+PE I  E+  G+ G
Sbjct: 389 PADAKLAVVFGCGGNRDRQKRPEMGRIAAELADRVILTSDNPRDENPEAILDEVEAGMAG 448

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
              +   +R EAIR A+E L   D+L+VAGKGHE    +  G K    D + +      +
Sbjct: 449 RVHLRIADRAEAIRRAVEQLGAGDILLVAGKGHEAYQEIR-GVKHHFSDRECLEACFAQM 507


>gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 1058

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 185/490 (37%), Positives = 268/490 (54%), Gaps = 13/490 (2%)

Query: 7    IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
              K    L +   + P + ++  +   + DSR ++ G++F A  G K +G  FI +AI  
Sbjct: 576  TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAI-- 632

Query: 67   GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
                   + A ++             LV +N R   +  A+R Y   P  + AVTGT+GK
Sbjct: 633  ------AAGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 686

Query: 127  SSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            +SVA   +Q+   +G  +  IG    I++       +TTP  +      S L+   ++HV
Sbjct: 687  TSVAELCRQLWTIAGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHV 746

Query: 186  SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              EASSHGLDQ+R DG K+IAG+FT+  RDH+DYH T + Y  AK+RLF+E +  +  A+
Sbjct: 747  IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 806

Query: 246  IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            ++ADD  +  V+      G +++ +G + + I L    A    Q +T+S++G+ +    P
Sbjct: 807  VWADDPAATTVIAHVQKRGLKLIDIGEKAEAIRLVNREADSQGQMITLSIQGESYKIRLP 866

Query: 306  LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            L G +Q+ NALVAAGL +A G D    +  L  L  V GR E    +  G  +YVDYAHT
Sbjct: 867  LIGGYQLSNALVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 926

Query: 366  SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             + L   ++ +R  T GR+ VVFG GGDRD+GKRP MGKIA +LAD  IVTDDNPR ED 
Sbjct: 927  PDGLRAAIEALRPHTEGRLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 986

Query: 426  EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK---KM 482
              IR EI+ G P   E G R EAI +AI+   K D++++AGKGHE   I+  GE      
Sbjct: 987  ATIRKEILVGSPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 1046

Query: 483  SVDCDIIREI 492
              D  + +E 
Sbjct: 1047 FDDVTVAKEA 1056


>gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
 gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
          Length = 491

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 148/504 (29%), Positives = 241/504 (47%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR +  G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQNVNSAVMEVSSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYHHNREKYAVLNSDDPVTEEYMR---STAATVITYGIDTHSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  +  L  VPGRFE V  
Sbjct: 282 TLVTPSESVNITMKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A + A 
Sbjct: 341 GGQDYTVIVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI+T DNPRSEDP+ I  +++ G  G  +    +R EAI   +     +D++++AGKGH
Sbjct: 401 HAILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFYGVSEAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D +I +E +
Sbjct: 461 ETYQIIGK-EVHHFDDREIAKEAI 483


>gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 494

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/501 (30%), Positives = 253/501 (50%), Gaps = 29/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+         ++    ++  ER  I  +  DSR +    +F+ I G + DGH F
Sbjct: 1   MKLMDLL--------EEIDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I QAI +GA AIV     +  D           + V +TR+ ++   S  YG+  +++  
Sbjct: 53  IDQAIKKGAIAIVAQKDMTGLD-------GVTWVQVKDTRQVMAQLGSTFYGRPSQHLEL 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S    +++I +        IG  +  I +   + + TTP  I L +    
Sbjct: 106 IGVTGTNGKTSTTYMIKKILENHERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQIFKE 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ + VT   +E SSH L   R+   +   G FTNL  +H+D+H+    Y  AK +LF  
Sbjct: 166 MADEKVTECVMEVSSHALALERVAESEFKVGVFTNLTPEHLDFHENIDNYREAKKKLFYL 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISV 295
                   +I  DD +   + +        +++ G + +   + K  A   K     +  
Sbjct: 226 TTVAN---VINIDDPHGAMIAEEVKKLKPSLITFGIKKQATVMAKNIATTLKDVTFDLVT 282

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      +PG F  YNAL +    IAIG+   ++++ ++ +  VPGRFE V    + 
Sbjct: 283 PVGEARVTVKIPGIFSAYNALASIATSIAIGVPFDVIVQGIQSIPGVPGRFESV-LGIKD 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +++E +++  + +T  R+I VFGCGGDRD+ KR +MG+I+  L+D++++
Sbjct: 342 FSVIVDYAHTPDAIENVIQAAKNVTEHRVITVFGCGGDRDRTKRSVMGEISGSLSDLSVI 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+EDP KI   I  GI      +    +R EAIR A++   K D++++AGKGHE 
Sbjct: 402 TSDNPRTEDPYKILMMIEAGIKKTKGLYTIIEDRREAIRYAMKEAKKGDIVLIAGKGHEA 461

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
              + +    +  DC + REI
Sbjct: 462 TQQIGSNVI-IFDDCGVAREI 481


>gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 499

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 150/497 (30%), Positives = 225/497 (45%), Gaps = 21/497 (4%)

Query: 9   KDFPELINQL------SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           K   EL+  L      S    Q  +  I+ +  DSR + +G +F  + G   DGH F   
Sbjct: 2   KKINELVEDLRSSGMVSAIVGQLSDEIISSIEFDSRKVTSGSLFCCVPGLHNDGHKFAVA 61

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  GA A++             ++ + PI++  + R  L   AS  +    E++  + V
Sbjct: 62  AVKSGAAALLCE------HIPDGVKKDVPIILSSDARSALGAIASSFHDHPSESLSMVGV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+    ++ I +  G        T    +   +   TTP    +   LS +   
Sbjct: 116 TGTNGKSTTTYMIRSIMRGRGKVGLLGTITYDDGTKEIEADRTTPEGSEIQAFLSEMVRS 175

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +E SSHGL Q RL G       FTNL  +H+D+H   + YF  K  LF + +  
Sbjct: 176 SCNGCVMETSSHGLAQGRLSGCLFDVAVFTNLTPEHLDFHGDMERYFETKKLLFTQYMKY 235

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I   DD Y K +++    +     S       +    +          +++EG+  
Sbjct: 236 NCKKIFNVDDPYGKRLLRECSGSDVVTYSSKSSSATVTGSNISLDVGGLFFDLAIEGRVN 295

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G + V NAL AA  C +IG     +   LE +  VPGR E      RG  I  
Sbjct: 296 RVRLPLIGRYNVSNALAAAAACHSIGFSYDEIQRGLENMPQVPGRMERYLFKKRGCAIV- 354

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++L  +L   R I  GR+I VFG GG+R +G R  MG+IA   AD  ++T DNP
Sbjct: 355 DYAHTPDALSNLLSAAREICKGRLIGVFGLGGERFRGNRWAMGEIAAQKADHLVLTMDNP 414

Query: 421 RSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R EDP  I  +I+ G+       +    +R +AI  A++M  + DV+V++GKG E   I+
Sbjct: 415 RGEDPLSIVEDILEGVHKVDGNSYDVIIDRKDAIYRALDMSREGDVVVISGKGPENY-IL 473

Query: 476 TNGEKKMSVDCDIIREI 492
             G+K    D + IR  
Sbjct: 474 IKGKKTPYSDSESIRNW 490


>gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. PCC 7002]
 gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp.
           PCC 7002]
          Length = 499

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/501 (32%), Positives = 256/501 (51%), Gaps = 17/501 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+ +     I  L+  PM   ++ +  ++S+S+ +  G +F+ + G + DG  F 
Sbjct: 2   MQLGALLKQV--SAIESLADHPM--LQQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFW 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI  GA A VVS   +L+ F AT      ++ V +     +  A+  Y K      ++
Sbjct: 58  QGAIEAGAIAAVVSPE-ALEKFPAT--KGECVIPVADPVIACAEIANLFYEKPTASLKLV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ +  ++   Q +   +  IG   T    + +    TTP  I L K  +  
Sbjct: 115 GVTGTNGKTTTSHLIEYFLQAAQQPTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G TH  +E SSH L Q+R+ G +     FTNL +DH+DYH T + YF AK  LF E 
Sbjct: 175 LEAGNTHAVMEVSSHALHQNRVKGCQFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEE 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++  D+ Y   +  +         S+      +++ ++       +  +    
Sbjct: 235 YCH-GRAVVNLDNPYGDRLAHKL-GEKAWGYSLQDAAADLYMDRLIYTATGVEGRLKTPM 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGG 356
              +F  PL G+F + N + A G  +A+G+D   ++  L +   VPGR E V     +  
Sbjct: 293 GTVEFTSPLVGQFNLENVMAAIGAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R   + ++I VFGCGGDRD+ KRP+MGKIA   +D A+VT
Sbjct: 353 SVIVDYAHTPDSLENLLKASRPFIAKKMICVFGCGGDRDRTKRPLMGKIAATQSDWAVVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I A+++ GIP    F+ + +R  AI+ AI      D +++AGKGHE   
Sbjct: 413 SDNPRTEDPKQILADVVEGIPENIQFLVEADRATAIQRAILEAQPGDGVLIAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+   EK    D +  R+ LG
Sbjct: 473 ILGT-EKIHFDDREEARKALG 492


>gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 486

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/476 (33%), Positives = 234/476 (49%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G     +      R +AI   I   N  DV+V+AGKGHE    + +G++    D
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAQLIASANADDVVVLAGKGHEDYQEI-DGQRHPFSD 471


>gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2]
 gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2]
          Length = 514

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/519 (33%), Positives = 265/519 (51%), Gaps = 39/519 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +  P     L        + +I  + +DSR ++ G +F+A+ G K DGH ++
Sbjct: 1   MKLSYLLKECTPLWRRSLDPASDPGSDPEITSIHNDSRDVKPGGLFIAVRGFKIDGHDYV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+ +GA A+VV            +     ++ V +TRK ++  A+R Y    E+  ++
Sbjct: 61  EDALERGAAAVVVQQ---------RVPGKQRMVEVADTRKAMASIAARFYDNPSESMCLV 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ I  ++G     IG  +        +N +TTP  I L + L+ +
Sbjct: 112 GITGTNGKTTTSFILESIFAQAGHCVGVIGTVNFRYRGKLFNNPVTTPESIDLQRILAQM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V+HV +E SSH +D HR+   +  AG FTNL +DH+DYH+T   YF  K R F  +
Sbjct: 172 KAAQVSHVVMEVSSHSIDLHRVRNCRFDAGVFTNLTQDHLDYHRTMGRYFACKRRFFTRI 231

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
           LP       + A+I  DD   + +   A     +V++ G   +  +    +         
Sbjct: 232 LPSGPKALTAMAVINLDDEKGQALRDAAAT---KVVTTGRDSRADVCALDLAETITGTTG 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++G  + F   L G F V N L AAG   AIGID  +++  +E    VPGR E V  
Sbjct: 289 ILKIDGAPYPFSSALVGAFNVENILSAAGAAHAIGIDPQVIVRGIEGCKGVPGRLERV-E 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G  ++VDYAHT ++L  IL+ ++     RII V GCGGDRD+ KRPIMG+IA  L+D
Sbjct: 348 PDNGRHVFVDYAHTPDALMSILETLKAQAPKRIITVVGCGGDRDRSKRPIMGQIAATLSD 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----------------GFIEKGNRIEAIRTAIEM 455
           +AI+T DNPRSEDP  I  EI+ GI                 GF  + +R +A+  A+  
Sbjct: 408 VAIITSDNPRSEDPHGIIQEILKGIDTALCPELKPDQLKTGNGFFVEPDRRKALELAVAA 467

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               D+LV AGKGHET  I+  G      D +I+   L 
Sbjct: 468 STPGDILVAAGKGHETYQILKGGTIH-FDDREILSSALA 505


>gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
 gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
          Length = 494

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/479 (32%), Positives = 240/479 (50%), Gaps = 11/479 (2%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            +     + ++  DSR  + G IFVA+VG+  DG  FI +A+A G  A++  +       
Sbjct: 20  PELESIAVEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAEKPHG 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                   P++ ++N    LS  A R+Y      ++ VTGT+GK+++   + Q     G 
Sbjct: 80  LIEWLDTVPVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQ 139

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G T        +    TT S I + + LS L+++   + ++E SSHGL Q R+  
Sbjct: 140 RSAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQGRVKA 199

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G FTNL RDH+DYH T + Y  AK  LF +   K   A+I  DD   K  M    
Sbjct: 200 LDFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQ--HKCKHAVINVDDEVGKAWMSDLS 257

Query: 262 NAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           NA    LS   GYQ        V       Q++            PL G+F   N LVA 
Sbjct: 258 NAIAVSLSPLTGYQQSVW-ASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAF 316

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +++GID  ++++   +L  V GR E     ++  ++ VDYAHT ++LE  L  +R  
Sbjct: 317 ATLLSLGIDKQILVDTAPQLQPVIGRMELFQVPNK-AKVVVDYAHTPDALEKALAALRVH 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
            SG++  +FGCGGDRD GKRP+M   A   AD  I++DDNPRSE+P  I  +++ G+   
Sbjct: 376 CSGKLWAIFGCGGDRDTGKRPMMSATAEQFADKIIISDDNPRSEEPALIVKDMLAGLSKP 435

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                + +R +A++ A+E     D++++AGKGHE   ++ +     S D +   ++LG+
Sbjct: 436 EAAFVEHDRYQAVKFALEQAGSDDIILLAGKGHEDYQVLKDKTVHYS-DRESALQLLGI 493


>gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
 gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
          Length = 482

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/503 (30%), Positives = 246/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+    P       +      + +I  ++ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNKLLKAIQP-------VQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA A++        D      +    + V ++       A+  YG       ++
Sbjct: 54  PTAIEKGAVAVLCE------DMPEEPVAGITYIQVKDSEDATGKIATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 227 MPKNAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSNFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAV-RSPKGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +I++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEILKEIF 481


>gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51]
 gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 496

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/503 (33%), Positives = 254/503 (50%), Gaps = 25/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+++  + K   E+ + + I   +  ++  I  +  DSR +Q G ++  + G   DGH F
Sbjct: 2   MRVKS-VRKRLSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
             QAIAQGA A++V     L         + P L V   R+ +   A+ LY      +  
Sbjct: 61  AAQAIAQGAAALLVERILPL---------DIPQLQVKKVREVMGNLAANLYDHPAAKLEV 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++   V+ I    G     IG     I+        TTP  I L K L  
Sbjct: 112 VGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKE 171

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV    +E SSH L   R+ G +  AG F+NL +DH+DYH+T + Y  AK +LF  
Sbjct: 172 MVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSG 231

Query: 237 L--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVT 292
           L  + +    ++  DD  ++ +++ +      V++ G          + +    +  + T
Sbjct: 232 LTGVKEPKVGVVNGDDPAAETLIRLSAAP---VVTYGVNADLLDYRAEDILLTADGVKFT 288

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G +    +  PG F VYNAL A    +  G     V E L  +  VPGRFE V   
Sbjct: 289 VRFKGGESQVEYSTPGMFSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRM- 347

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +  +I VDYAHT + LE + +  +  T GR+I VFGCGGDRD+GKRP MG IA +L+D 
Sbjct: 348 GQPFQIIVDYAHTPDGLENVCRTAQEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDH 407

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            IVT DNPR+EDP +I  +I+ GI G  +    NR EAI  A  +  + D +++AGKGHE
Sbjct: 408 VIVTSDNPRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+   +     D ++ RE L
Sbjct: 468 DYQIIGK-DVFPFDDREVAREAL 489


>gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
 gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
          Length = 500

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/502 (34%), Positives = 259/502 (51%), Gaps = 22/502 (4%)

Query: 11  FPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI  ++I  +    + +I+ ++ DSR I+ G +FVA+ G   DGH FI  A+ +GA 
Sbjct: 3   LRELIENINIKTLSGGLDLEISHINYDSRRIEPGDLFVAMKGQSLDGHDFIGDAVRKGAV 62

Query: 70  AIVVS-SAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A++      ++    A      P+L+ V+++RK LS  A+  YG      N++ +TGT+G
Sbjct: 63  AVLSELKTDAIARKLACESDQMPVLLQVEDSRKALSQLAATFYGHPFRTMNLIGITGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  ++ I   +G +   IG  +  I      + +TTP  + L K L  ++ Q  T 
Sbjct: 123 KTTTSYLLEFILAAAGRNPGVIGTINRRIGQLCFKSSVTTPESLDLMKILREMADQSATD 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--- 241
           V +E SSH LDQ R+         FTN+ RDH+DYH +   YF AK  LFE L  +    
Sbjct: 183 VIMEVSSHALDQGRVADCPFRVALFTNISRDHLDYHHSMDDYFRAKSLLFEGLGNRGNQG 242

Query: 242 -SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE-GK 298
            + A+I  DD + K +M        R ++ G      +  K V          +  E  +
Sbjct: 243 AACAVINTDDPWGKHLMAL---TPARTVTYGLGNSCDVTAKDVSVSRKGLHARLIFEKRE 299

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + D    L G F +YN + AA   +A+G+DS  +L  +E++  VPGR E V  N R   I
Sbjct: 300 EIDIRSSLIGNFDIYNIMAAASAAMAMGVDSKAILLGIERMKGVPGRMELVP-NDRSLAI 358

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L   + ITSGRI+ VFGCGGDRD+GKR  MG+IA   +    VT D
Sbjct: 359 IVDYAHTPDALEKALAATKQITSGRILTVFGCGGDRDKGKRYEMGRIAGANSHRIFVTSD 418

Query: 419 NPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           NPRSEDP  I  +I  G+       ++ + +R +AIR A+      D++++AGKGHE   
Sbjct: 419 NPRSEDPASIADQIEKGVIASGHQNYVIELDREKAIRMAVREAANDDLVLIAGKGHEDYQ 478

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
            +    ++   D  +      L
Sbjct: 479 -LMGKTRRNFDDRVVAARAASL 499


>gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 491

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/502 (32%), Positives = 247/502 (49%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK      K+  E I    I  +   +  I  +++DSR ++ G IF A+ G K+DG  +I
Sbjct: 1   MK----KLKEIVEYIKDHVIEVIGDVDLNITGIATDSRKVRKGNIFFALPGTKDDGKNYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI++GA A+ +                 P++ V      LS  +S  Y   P   L +
Sbjct: 57  SDAISKGASAVFLE-------GEVNNIYGVPLVRVREILDVLSKVSSYFY-DFPSKYLNI 108

Query: 121 TGTSGKSSVAS---FVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
            G +G +   +    +    +  G+ S  IG     I   +  +  TTP P  L + L  
Sbjct: 109 IGVTGTNGKTTTTNLLYHYWKSKGIRSGLIGTIEYKIDDESYPSNFTTPQPQDLQEILRK 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + V  +++E SSH L   R+DGI L    FTNL +DH+D+H+T + YF AK+++F  
Sbjct: 169 MVDREVKFLAMEISSHALALKRVDGISLKGAVFTNLTQDHLDFHKTMEEYFQAKLKIF-N 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L     A+I  D+ ++  +         RV  V  +   ++LKK    +N   + I   
Sbjct: 228 YLEDGGFAVINRDNEWTGRI----SLPNRRVFWVSLKNGDLYLKKHENTNNGMLLEIGTP 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D      L G+F +YN L A G+ I +G     + + L     V GR E +    +  
Sbjct: 284 LGDLIIDTKLKGKFNIYNILFAVGVLIGLGEPLEDISKFLSTFKGVKGRLELI-REGQNF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + L  +L+ ++  T GR+IVVFGCGGDRD  KR  MG+I+  LADI IVT
Sbjct: 343 DVIVDYAHTPDGLFNVLQTVKEFTKGRVIVVFGCGGDRDPTKRDKMGEISARLADIVIVT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR+EDP KI  +I  GI       +    NR EAI+ AIE+  + D +++AGKGHE 
Sbjct: 403 SDNPRTEDPLKIIRQIEEGIRRVGRSDYFVIENREEAIKKAIEIAGEGDSVLIAGKGHED 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ N  K    D ++ ++ +
Sbjct: 463 YQIIGN-TKIPFSDQEVAKKYI 483


>gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 487

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 243/485 (50%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IF    R+  I E++ DSR+++AG +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPLTDVPLIPVKGLAAQLSDIAGRFYGDPSRQLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q    TTP+PI +   L+ L + G   V++E SS
Sbjct: 119 VAQALDLLGQRCGLVGTLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T +AY  AK +LF          +I  DD 
Sbjct: 179 HGLDQGRVAALAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFA--WNDLRCRVINLDDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++    H +     S+     +++ ++     +  + T+     +      L G F 
Sbjct: 237 FGRQLAADKHESRLITYSLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L  L KL    GR + +G  ++   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAVGALLGLEYALDEILAVLPKLEGPAGRMQRLGGGTQ-PLVVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +R    GR++ +FGCGGDRD+GKRP+M ++   LAD  +VTDDNPRSEDP +I  +
Sbjct: 356 VLLALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQIFDD 415

Query: 432 IIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G     +      R  AI   I   +  DV+V+AGKGHE    + NG++    D   
Sbjct: 416 IRAGFSAAEKVEFVAGRGLAIARLIASASADDVVVLAGKGHEDYQEI-NGQRHDFSDLAE 474

Query: 489 IREIL 493
             + L
Sbjct: 475 ADKAL 479


>gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
 gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
          Length = 482

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 246/502 (49%), Gaps = 32/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+    P       +        +I  V+ DSR I  G +F+A+ G + DGH +I
Sbjct: 1   MRLSDLLQTIQP-------VRIAGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA A++        +    +++    + V ++   +   A+  YG       ++
Sbjct: 54  PAAIDKGAVAVLCE------ELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +    +  G     +      I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+EL
Sbjct: 168 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       KV   H +  +   ++ 
Sbjct: 228 -PKGAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGKVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F  YN L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVRFIGKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAI-RSPKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               +  G K    D +I+ EI
Sbjct: 460 NYQEIK-GVKHHFDDKEILNEI 480


>gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
 gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
          Length = 482

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/502 (30%), Positives = 245/502 (48%), Gaps = 32/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       +  +   E+ I  V+ DSR + AG +F+A+ G + DGH +I
Sbjct: 1   MKLSELLKAIQP-------VQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA A++        D       +   + V ++   +   A+  YG       ++
Sbjct: 54  PTAIEKGAIAVLCE------DMPEETNPDVTYIQVKDSENAVGKVATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADSGCKYAFMEVSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK + ++   DD      +    N   RV +   +       KV   H +  +   ++ 
Sbjct: 227 MPKNAFSLTNLDDKNG---LVMTQNTRSRVYTYSLRSLSDFKGKVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +G  
Sbjct: 281 NNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDSI-RSPKGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDLQKTISIADRKEAIKTACMLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               +  G K    D + ++ I
Sbjct: 460 NYQEIK-GVKHHFDDKEELKAI 480


>gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 493

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 162/472 (34%), Positives = 251/472 (53%), Gaps = 11/472 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA+VG+  DG  FI  AI +GA A++  +       +  I  +
Sbjct: 25  VSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A +LY      ++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  IPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        ++   TT + + +   L+ L+ Q   + ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSLSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF +   +   AII  DD       K+  NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTQ--HQCDQAIINVDDEVGAAWAKQLTNAIAVSL 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +   + K   L      + +  +TI  +G+  +     PL GEF   N ++A    +++G
Sbjct: 263 APTTEFK-HALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLLSLG 321

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D + +L    +L  V GR E     +R  ++ VDYAHT ++LE  L+ +R    G++  
Sbjct: 322 FDKSDLLATAAQLQPVLGRMELFQAENR-AKVVVDYAHTPDALEKALQALRVHCDGQLWA 380

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443
           +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I  +++ G+      I + 
Sbjct: 381 IFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVFIVKDMLAGLSKPAEAIVQH 440

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +R +A+  A+E    QD++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 441 DRFKALSYALENAAPQDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
 gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
          Length = 492

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/504 (31%), Positives = 235/504 (46%), Gaps = 25/504 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   DFP         P+         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETDFP---------PLPCENAAGRLLHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  I          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFIFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALKETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +        
Sbjct: 230 QGLQHAVINIDDGYGAELVCRLKKDCPDLAVYSYGFSEHADIRIADFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLGKICPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A++ AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGTALWCVFGCGGNRDRGKRPLMGAAAVEGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           ++T DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VITSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVERAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
             V  G K    D +I  + L  +
Sbjct: 469 QDV-QGVKHHFSDFEIAEKALAEL 491


>gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 496

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/493 (34%), Positives = 243/493 (49%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ + +   ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G     +         TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II A
Sbjct: 184 VSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A        + VG+ G ++   +V    N   +       +     
Sbjct: 242 DDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++G     +L     L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALVAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI      DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILG 494
            S D   +  +LG
Sbjct: 481 YS-DRVTVARLLG 492


>gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 487

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 235/486 (48%), Gaps = 14/486 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++       ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSDLKCRVINLDDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAAIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GAEKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 433 IHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G   +        R +AI   I   N  DV+V+AGKGHE    + NG+++   D    
Sbjct: 417 RPGFVAVDKVRFVEGRGQAIAELIAGANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475

Query: 490 REILGL 495
              L +
Sbjct: 476 ASALDV 481


>gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 509

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 149/500 (29%), Positives = 246/500 (49%), Gaps = 21/500 (4%)

Query: 14  LINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+  + +         +I  +S+DSR I+ G +F+ + G K DG  F  +AI +GA A +
Sbjct: 8   LLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIERGACAAI 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +S   SL +       +  +++ +    F+   A+  +GK      ++ +TGT+GK++ +
Sbjct: 68  ISKKASLLNPPTN--EDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTTS 125

Query: 131 SFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ +    G  S   G   +   +  + ++ TT   + L   L      GV + ++E 
Sbjct: 126 FLIEFLTTSLGHPSALFGTLINRWPNHEETSKYTTTFAVPLQAKLRKAVQAGVEYGAMEV 185

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--PAIIY 247
           SSH L Q+R+ G       FTNL RDH+DYH + ++YF AK  LF   L ++    ++I 
Sbjct: 186 SSHALSQNRVAGCDFNGAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIEDGGPRSVIN 245

Query: 248 ADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            DD +  ++ K  +           S   +   +++  +  + +  +  +       +F+
Sbjct: 246 IDDKWGAKLAKELNKKCWTCSLKENSQTREKADLYISNLQIMQDGYKGKLHTPFGVENFI 305

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-----I 358
            PL GEF + N L A G+ +  G+    +L  L K   VPGR + +  +    +     +
Sbjct: 306 SPLIGEFNLMNMLQAVGILVQRGLPLNDLLAALNKFPGVPGRMQLINMDGFKVKEGYPLV 365

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + L+  L   R++T  R+I VFGCGGDRD+GKR  MG++A   AD  +VT D
Sbjct: 366 IVDYAHTPDGLQNALIASRSLTKRRLICVFGCGGDRDKGKRSKMGEVAAKFADYIVVTSD 425

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR EDP +I  +I  GI        +  R  AI+ AI    K DV+++AGKGHE   I+
Sbjct: 426 NPRQEDPIEIIKDIGKGITIDSEISVEPERSIAIQLAIAKAKKNDVVLIAGKGHEDYQIL 485

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D +  R+ L L
Sbjct: 486 KDQTI-YFDDREQARKALSL 504


>gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 487

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/486 (32%), Positives = 235/486 (48%), Gaps = 14/486 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   +F    R+  I E++ DSR+++ G +F+A+ G   DG   I  A+ +GA A+    
Sbjct: 4   NLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFV 133
           AY ++       ++ P++ V      LS  A R YG    +++   VTGT+GK+SV   V
Sbjct: 60  AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLILVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF  L       +I  DD +
Sbjct: 180 GLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWL--DLKCRVINLDDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G     +      R +AI   I   N  DV+V+AGKGHE    + NG+++   D    
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475

Query: 490 REILGL 495
              L +
Sbjct: 476 ASALAV 481


>gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
 gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
          Length = 491

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 148/504 (29%), Positives = 241/504 (47%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR +  G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQNVNSAVMEVSSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++ +DD  ++E M+   +    V++ G      I  K +         
Sbjct: 225 GNSYHHNREKYAVLNSDDPVTEEYMR---STAATVITYGIDTHSDIMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +  +    L G+F VYN L A    +  G+    ++  +  L  VPGRFE V  
Sbjct: 282 TLVTPSESVNITMKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A + A 
Sbjct: 341 GGQDYTVIVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI+T DNPRSEDP+ I  +++ G  G  +    +R EAI   +     +D++++AGKGH
Sbjct: 401 HAILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFHGVSEAKAEDIIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D +I +E +
Sbjct: 461 ETYQII-GKEVHHFDDREIAKEAI 483


>gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
 gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
          Length = 492

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/494 (34%), Positives = 260/494 (52%), Gaps = 21/494 (4%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K+  E + +  I    + +  I  +++DSR ++ G IF A+ G ++DG  +I  AI++G
Sbjct: 4   LKEIVEYVREYVIETRGYLDGNITGIATDSRKVKEGNIFFALPGTRDDGRRYIGDAISKG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A+                 +  ++ V      LS  +   Y    +  NI+ VTGT+G
Sbjct: 64  ARAVFFEGEVD------NFERDVALIRVKEIFDVLSKVSLYFYNFPSKHLNIVGVTGTNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +    +  GL S  IG     I   +  +  TTP P  L + LS + ++GV  
Sbjct: 118 KTTTTSLLYHYWKGKGLKSGLIGTIDYRIDEESYPSNFTTPQPQELQEILSKMVNKGVKF 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +++E SSH L   R+DG+ L A  FTNL +DH+D+H+T + YF AK+++F+ L   E  A
Sbjct: 178 LAMEVSSHALSLKRIDGVSLKAVVFTNLTQDHLDFHKTMEDYFQAKLKIFDHL-EDEGFA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I  D+ ++K +    + A  RVL    +   I+LKK    ++   + I+    D     
Sbjct: 237 VINRDNEWTKRI----NLADKRVLWASLEEGDIYLKKYENTNSGMILEIATPLGDTVIDT 292

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+F +YN L A G+ I +G     + + L     V GR EF+    +   + VDYAH
Sbjct: 293 KLRGKFNIYNILFAVGVLIGLGEPLEDISKILSTFKGVKGRLEFI-REGQNFNVIVDYAH 351

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T + L  +L+ I+  T GR+IVVFGCGGDRD  KR  MG+I+  LAD+ IVT DNPR+ED
Sbjct: 352 TPDGLYNVLQTIKEFTKGRVIVVFGCGGDRDPTKRGKMGEISAKLADVVIVTSDNPRTED 411

Query: 425 PEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P KI  EI  GI       +    NR EAI+ AIE+  + D +++AGKGHE   I+    
Sbjct: 412 PMKIIREIEKGIKRVGRLDYFVIENREEAIKKAIEIAKEDDSVLIAGKGHEDYQIIGT-I 470

Query: 480 KKMSVDCDIIREIL 493
           K    D +I R+ +
Sbjct: 471 KIPFSDQEIARKYI 484


>gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei
           VT8]
 gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter aquaeolei VT8]
          Length = 494

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/476 (32%), Positives = 244/476 (51%), Gaps = 14/476 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I+ + +DSR ++ G  F+A+ G +     ++ QAI+ GA AI++ S    Q      
Sbjct: 21  DVTIHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISAGATAILLESEQERQCHERHG 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               P++     R  L   A R +        ++ VTGT+GK+SV  ++ Q+ + +G   
Sbjct: 81  ALIVPVV---GLRARLGRIADRFFEHPSRHLRVIGVTGTNGKTSVTQYISQLLRETGTPC 137

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +    +    TTP  + + + L+ + ++G     +E SSH LDQ R+D + 
Sbjct: 138 GLLGTLGYGMPGSIESATHTTPDVVQVNRVLNRIRNEGGRAAVMEVSSHALDQGRVDNLT 197

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTNL RDH+DYH + +AY  AK RLF  L  +   ++I  DD + +++  +    
Sbjct: 198 MTGAVFTNLTRDHLDYHGSMEAYGEAKARLF--LREELHFSVINFDDPFGRQLYGQLEGQ 255

Query: 264 GCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             RV  S+      + LK+     +  +  +  +  +FD   PL G F   N L A    
Sbjct: 256 CDRVRYSLHEAQTELWLKEFTPTASGFRARVDGQWGEFDLTVPLLGSFNASNVLAALATV 315

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +G+     +  + +L   PGR E   T S G  + VDYAHT ++L   L+ +R  T G
Sbjct: 316 LTLGVPVERAVSVVRELSPPPGRLERF-TGSTGKHVVVDYAHTPDALANALEALRPHTRG 374

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GF 439
           R+I VFGCGGDRD GKRP M K A   AD  IVTDDNPR+E PE+I ++I  G      +
Sbjct: 375 RLICVFGCGGDRDPGKRPEMAKEAEKRADYVIVTDDNPRTEQPERIVSDISAGFTQAGRW 434

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
               +R +AI  A+ M N+ D++++AGKGHE    +  G+K    D + +R +L L
Sbjct: 435 QVIHDRAQAIAEALGMANEDDLVLIAGKGHEAYQEIR-GQKLPFSDAEQVRHLLNL 489


>gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 487

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 238/485 (49%), Gaps = 14/485 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G   DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  S    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSSVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNMVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDLLGQHCGIVGTLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   I       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD +
Sbjct: 180 GLDQGRATAIAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFA--WPNLNCRVINLDDEF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +++    H +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRKLATLKHESRLITYSQLDSAAYLYCRDARFDDDGVRATLVTPQGEHFLRSALLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  S+   + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLGGASK-PLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPR+E P +I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRNEPPSQIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G     +      R +AI   I   +  DV+V+AGKGHE    +  G++    D    
Sbjct: 417 RPGFVAADKVRFVEGRGQAIAELIASASADDVVVLAGKGHEDYQEIA-GQRHPFSDLQEA 475

Query: 490 REILG 494
            + L 
Sbjct: 476 AKALA 480


>gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 493

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/505 (31%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+       +NQ            I+ ++ DSR +  G +FVAI G+  DG  FI
Sbjct: 2   MQLSELLLPWCD--LNQS---------VAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118
             AI QGA A++  +       +  +  N  ++ +D+    LS  A   Y   K    ++
Sbjct: 51  SSAIEQGAVAVIADADKENIAGTVKVIDNAIVVYIDSLYTQLSAIAGAFYQADKRNMQLV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++  + Q        +  +G T   + S  +    TT SPI + + L+ L
Sbjct: 111 GITGTNGKTTISQIIAQWTTLLEQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTEL 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G    ++E SSHGL Q R++ +   A  FTNL RDH+DYH     Y  AK  LF   
Sbjct: 171 ENIGAKLTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSH 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTI 293
            PK S   I  DD    + +K   +A    L+      + GK +    V       +++I
Sbjct: 231 RPKNSI--INGDDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIKLSI 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S +  +  F  PL G F   N LVA    +++G D   + +   +L+ V GR E   T++
Sbjct: 289 SSDWGNVAFSVPLIGAFNASNILVAFAALLSLGYDIQALAQTASQLNAVIGRMELFATDN 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +  ++ VDYAHT ++L+  L+ +R    G++  +FGCGGDRD GKRPIM  I    AD  
Sbjct: 349 K-AKVVVDYAHTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPIMASIVEQQADAI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I++DDNPRSE+P  I  +++ G+          +R EA + A+   N+ D++++AGKGHE
Sbjct: 408 ILSDDNPRSEEPSLITDDMLVGLKNAESAHVIHDRFEACQFALSQANENDIILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
              ++ +     S D +  + +LGL
Sbjct: 468 DYQVLADKTVHYS-DRETAQTLLGL 491


>gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
 gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
          Length = 491

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/503 (30%), Positives = 241/503 (47%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +     ++N+++ DSR +  G +F+ I G   DGH F
Sbjct: 1   MKLS--------ELMQAIPVFTGEASSAIEVNQIAQDSRKVNPGTLFICIDGEIADGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A   GA AI+      +           P++ V +T++ +++ A+  YG   +   +
Sbjct: 53  AKKAEELGAVAIIAEKTVDVA---------IPVIYVRDTKRAMAMLANYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  QGV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +
Sbjct: 164 MLLQGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQ 290
           L           A++ ADD  S   ++        V++ G +         +    +   
Sbjct: 224 LGNSYHSSNPKIAVLNADDEES---VRMQTATAAHVITFGIKAAADFRASNIQITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +   G  F     + G F VYN L A     A+ I     +  +E +  V GRFE V 
Sbjct: 281 FDLDTPGGHFKLKIKMIGNFSVYNVLAAIATSYALHIPLDNAISTVEAIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDY+HT + L  +L+ I      R+ VV GCGGDRD+GKRP M K+A+  A
Sbjct: 341 A-GQDFPVIVDYSHTPDGLLNVLQTISEFAEKRVFVVVGCGGDRDKGKRPQMAKVAVKYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              + T DNPRSE+P +I  ++I G+P    ++   NR +AI+ AI      DV+++AGK
Sbjct: 400 TNPVFTSDNPRSENPREIIEDMIKGVPENDSYVVHENRRDAIQYAISKAETGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   I+ + E     D    R
Sbjct: 460 GHEDYQIIGD-EVIDFDDRVEAR 481


>gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
          Length = 483

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/503 (31%), Positives = 251/503 (49%), Gaps = 38/503 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+    P       +      + +I  V+ DSR I AG +F+A+ G + DGH +I
Sbjct: 3   MKLSDLLKTIQP-------VHITGSTDLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA A++        D     +S    + V ++   +   A+  YG       ++
Sbjct: 56  PAAIEKGAIAVLCE------DLPKEQKSGITYVQVKDSEDAVGKVATAFYGDPTSKMELV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKAL 174
            VTGT+GK+++A+ +    +  G   +++G  ST+ ++  D       TTP PI L + L
Sbjct: 110 GVTGTNGKTTIATLLYNTFRYFG---YKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLL 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F
Sbjct: 167 GEMADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFF 226

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++ +PK + ++   DD      +    N   RV +   +       KV   H +  +   
Sbjct: 227 DD-MPKSAFSLTNLDDKNG---LVMTQNTRSRVYTYSLRSLSDFKGKVLESHFEGML--- 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +
Sbjct: 280 LDFNNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPK 338

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D 
Sbjct: 339 GFTAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDR 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR E+P+ I  +++ G     +   +   +R EAI+ A  +    DV++VAGK
Sbjct: 399 VIITSDNPRFEEPQDIINDMLAGLGKDDLQKTVSITDRREAIKAACMLAQPGDVILVAGK 458

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE    +  G K    D + ++
Sbjct: 459 GHEDYQEIK-GVKHHFDDKEELK 480


>gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 10329]
          Length = 493

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/472 (34%), Positives = 250/472 (52%), Gaps = 11/472 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA+VG+  DG  FI  AI +GA A++  +       +  I  +
Sbjct: 25  VSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A +LY      ++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  IPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        ++   TT + + +   L+ L+ Q   + ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSLSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF +   +   AII  DD       K+  NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTQ--HQCDQAIINVDDEVGAAWAKQLTNAIAVSL 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +   +     L      + +  +TI  +G+  +     PL GEF   N ++A    +++G
Sbjct: 263 APTTE-FEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLLSLG 321

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D + +L    +L  V GR E     +R  ++ VDYAHT ++LE  L+ +R    G++  
Sbjct: 322 FDKSDLLATAAQLQPVLGRMELFQAENR-AKVVVDYAHTPDALEKALQALRVHCDGQLWA 380

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443
           +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I  +++ G+      I + 
Sbjct: 381 IFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKDMLAGLSKPAEAIVQH 440

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +R +A+  A+E    QD++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 441 DRFKALFYALENAAPQDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|238797711|ref|ZP_04641206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
 gi|238718463|gb|EEQ10284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
          Length = 471

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 239/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S +     P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVSEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINADDEVGRRWLSQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G++G ++  +KV    N   +       +      L G F V N LVA    +++
Sbjct: 239 SQVPTGWKGPWLSARKVQYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHALAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI      DV+++AGKGHE   +V N     S D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYS-DRVTVARLLGVV 470


>gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
 gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
          Length = 482

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 237/479 (49%), Gaps = 25/479 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
              +I  + +DSR ++ G +FV + G   D H F              +   +       
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF---------AKQAAAQGAAAIVAERP 60

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           I  + P+++V NT + L++ A   YG+    +  + +TGT+GK++ +  + +I +  G  
Sbjct: 61  IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHK 120

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG  +  I     + + TTP  + L +  S +  QGV    +E SSH LD  R+ G 
Sbjct: 121 TGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGC 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVM 257
                 FTNL +DH+DYH+T + Y +AK  LF +L       +E  A++ +DD  ++E M
Sbjct: 181 DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYM 240

Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +   +    V++ G   +  I  K +         T+    +  +    L G+F VYN L
Sbjct: 241 R---STAATVVTYGIDTRSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVL 297

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    +  G+    ++  +++L  VPGRFE V    +   + VDYAHT +SLE +LK  
Sbjct: 298 AATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD-GGQNYTVIVDYAHTPDSLENVLKTA 356

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  I  +++ G 
Sbjct: 357 KQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGA 416

Query: 437 PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            G  +    +R EAI  AI  +   D++++AGKGHET  I+   E     D ++ +E +
Sbjct: 417 SGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII-GKEVHHFDDREVAKEAI 474


>gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL S4-378]
          Length = 491

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 247/503 (49%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+        EL+  + ++  +     ++N+++ DSR +Q G +F+ I G   DGH F
Sbjct: 1   MKLK--------ELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P+L V ++++ +++ A   YG   +   +
Sbjct: 53  ANRAVQLGAVAIIAEKQLDV---------SVPVLYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQ 223

Query: 237 L-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L     L     A++ ADD   KE ++        +++ G  +        +    +   
Sbjct: 224 LGNSYNLSNPKIAVLNADD---KESVRMQTATAAHIITFGIKEPADFSASNIQITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     DF     + G F VYN L A     A+ I     +  +E +  V GRFE V 
Sbjct: 281 FDLKTPVGDFSLKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVN 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDY+HT +SL  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSEDP  I  ++  G+PG   ++   NR +AIR A+ M    DV+++AGK
Sbjct: 400 TNPIFTSDNPRSEDPHAIIEDMTQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQVIGD-EVIDFDDRVEAR 481


>gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
 gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 492

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 233/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   DFP         P+         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETDFP---------PLPCANAAGRLLHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   +++    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDDLKVWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFRT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 487

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/486 (32%), Positives = 234/486 (48%), Gaps = 14/486 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY +   +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVAGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSDLKCRVINLDDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M  +   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G     +      R +AI   I   N  DV+V+AGKGHE    + NG+++   D    
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475

Query: 490 REILGL 495
              L +
Sbjct: 476 ASALAV 481


>gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes Clip81459]
 gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-064]
 gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 1816]
          Length = 491

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/503 (31%), Positives = 244/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADD  S  + K        V++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQK---ATAAHVITFGIKQQADFKASNIRITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGK
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQVIGD-EVIDFDDRVEAR 481


>gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 10403S]
          Length = 491

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/503 (31%), Positives = 245/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADDA S  + K        +++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQK---ATAAHIITFGIKQEADFQASNIKITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIDEFAKKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGK
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQVIGD-EVIDFDDRVEAR 481


>gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya zeae Ech1591]
 gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591]
          Length = 494

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/495 (35%), Positives = 253/495 (51%), Gaps = 13/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   AG +FVAIVG+K DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDVLAPWVKDAPERALREMTLDSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +  +  D + T     P++ +D+    LS  A R Y +      ++ VTGT+GK++ 
Sbjct: 64  VAQADEATPDGTLTEMHGVPVIYLDDLNLRLSALAGRFYRQPSSSLQLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +      +  TT S + + + LS L +QG    ++E
Sbjct: 124 TQLLAQWSQALGKTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLVAQGANFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR++ +   A  FTNL RDH+DYH     Y  AK RLF E   +    II A
Sbjct: 184 VSSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAE--HQVGQKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           DD   +  + R  +A    ++      + +++   ++    +   VT             
Sbjct: 242 DDEVGRRWLSRLPDAVAVSVTGEIDSARARWLKATRIDYHDSGFTVTFDSSWGGGAINSR 301

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF V N L+A    +++G     ++E    L  V GR E    + R   + VDYAHT
Sbjct: 302 LMGEFNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLADGR-PTVVVDYAHT 360

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L   R    G +  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSEDP
Sbjct: 361 PDALEKALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDP 420

Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I  +I+ G+           R EA+ +A+      DV++VAGKGHE   +V N     
Sbjct: 421 QAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERLDY 480

Query: 483 SVDCDIIREILGLIL 497
           S D   +  +LG+I+
Sbjct: 481 S-DRITVARLLGVIV 494


>gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 487

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 235/485 (48%), Gaps = 14/485 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKR +M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRSLMAEVVERLADGVWVTDDNPRSESPAIIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G     +      R +AI   I   N  DV+V+AGKGHE    + +G++    D    
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 475

Query: 490 REILG 494
            + L 
Sbjct: 476 AKALA 480


>gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas mossii DSM 22836]
          Length = 483

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 243/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQDL+       I+ + I   Q  +  +  V +DSR    G +F+A+ G + DGHL+I
Sbjct: 1   MKLQDLLKN-----IDVIEIKGEQ--DINVTGVFTDSRKATPGSVFIALKGVQVDGHLYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENIL 118
             A+  GA+ I+  +     +           + V ++       A+  YG       ++
Sbjct: 54  KNALELGAKVILHENKIDTSN------EGITYIKVKDSADAAGKIATHWYGDPSNNLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A+ + ++ ++ G     +   +  I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTTATLLYEMFRKLGYKVGLLSTVANYIDGKVYHATHTTPDPISLNEMLKNM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G+K   G FTNL +DH+DYH+T   Y  AK   F++L
Sbjct: 168 VDAGCEYAFMEVSSHAIHQKRISGLKFEGGIFTNLTQDHLDYHKTMGEYLKAKKAFFDQL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+   DD      +    N   +  +           ++   H      I + G
Sbjct: 228 -PDTAFALTNIDDKNG---LVMLQNTKAKTSTYSVHSLADFKARIIEKHFDGTA-IEING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+        G F VYN L   G  + +G  S   L  L  L  V GRFE +  +S+G  
Sbjct: 283 KELQV--QFVGVFNVYNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETI-RSSQGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L+ I  +   +GR+I V GCGG+RD+ KRPIM + A+ L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  ++  G     +   +    R +AI+TA  +    DV+++AGKGHE
Sbjct: 400 TSDNPRYEEPQAIINDMADGLNSEQLKKALLIVEREQAIKTACALAKAGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               V  G K    D +I++ I G
Sbjct: 460 DYQDVK-GVKHHFDDKEIVKNIFG 482


>gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 512

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/508 (33%), Positives = 254/508 (50%), Gaps = 26/508 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DLI +     I  L           ++ +SSDSR +  G +F+A+ G   DGH FI
Sbjct: 1   MSLADLIRQ-----IPVLEAAGGSTTSLPVSMISSDSRDVLPGALFIAVRGYSADGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+ +GA A++       +       ++ P L V++ R+ L+L A + YG   +  +++
Sbjct: 56  KSAVERGAAAVLCE-----EIPPVLPDASLPYLRVEDARQALALAARQFYGFASDALHVI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A  +  +    G+ +  IG    T          TTP    L      +
Sbjct: 111 GVTGTNGKTTTARLITAMLNACGIRTGYIGTNLCTFGEQQIPLDRTTPEAHILHALFRRM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G +   +E SSH L   R+ GI   A  FTNL  +H+D+H+T Q Y  AK +LFE+L
Sbjct: 171 LDSGCSVAVMEVSSHALVLQRVYGITFHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQL 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-------IHLKKVCAIHNKQQ 290
            P+   A+I +DD  ++E++ + +       ++   G+           + +        
Sbjct: 231 SPQ-GFAVINSDDPRAEEMVSKINPEKRFCCTLDQTGRVAGDASRRFSAELIDQSIASAT 289

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +            LPG++ V N L AA +   +G+ S +V   L+ L  V GR E + 
Sbjct: 290 IRLCFPDAQQTISTVLPGQYNVMNLLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIM 349

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALD 408
              R   ++VDYAHT ++L   L  +  + S   R+IVVFGCGG+RD+ KRP MG+IA++
Sbjct: 350 DRRRKEFVFVDYAHTPDALFKALSTLNALKSPASRLIVVFGCGGNRDRLKRPEMGRIAVE 409

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            AD+ I+T DNPR EDPE I  EI  GI         +R +AIRTA+ +L   DVL+VAG
Sbjct: 410 NADLVILTSDNPRDEDPEMIIDEIEKGIRVKNHKRITDRAQAIRTAVALLQPGDVLLVAG 469

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHE     T GEK    D + +R  L 
Sbjct: 470 KGHEQYQE-TAGEKSFFSDQETLRNALA 496


>gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
 gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
          Length = 495

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/503 (33%), Positives = 254/503 (50%), Gaps = 25/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+++  + K   E+ + + I   +  ++  I  +  DSR +Q G ++  + G   DGH F
Sbjct: 1   MRVKS-VRKRLSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDF 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
             QAIAQGA A++V     L         + P L V   R+ +   A+ LY      +  
Sbjct: 60  AAQAIAQGAAALLVERILPL---------DIPQLQVKKVREVMGNLAANLYDHPAAKLEV 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++   V+ I    G     IG     I+        TTP  I L K L  
Sbjct: 111 VGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKE 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV    +E SSH L   R+ G +  AG F+NL +DH+DYH+T + Y  AK +LF  
Sbjct: 171 MVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSG 230

Query: 237 L--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVT 292
           L  + +    ++  DD  ++ +++ +      V++ G          + +    +  + T
Sbjct: 231 LTGVKEPKVGVVNGDDPAAETLIRLSAAP---VVTYGVNADLLDYRAEDILLTADGVKFT 287

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G+     +  PG F VYNAL A    +  G     V E L  +  VPGRFE V   
Sbjct: 288 VRFKGEAEQVEYSTPGMFSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRM- 346

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +  +I VDYAHT + LE + +  +  T GR+I VFGCGGDRD+GKRP MG IA +L+D 
Sbjct: 347 GQPFQIIVDYAHTPDGLENVCRTAQEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDH 406

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            IVT DNPR+EDP +I  +I+ GI G  +    NR EAI  A  +  + D +++AGKGHE
Sbjct: 407 VIVTSDNPRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+   +     D ++ RE L
Sbjct: 467 DYQIIGK-DVFPFDDREVAREAL 488


>gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer RA-YM]
 gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 486

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 166/502 (33%), Positives = 254/502 (50%), Gaps = 32/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++ + P L        +   + +++ +  DSR  +A  ++VAI G+  DGH FI
Sbjct: 1   MLLRELLH-NIPVL------ETIGALDVEVSSIVFDSRKAEAKSLYVAIKGSVSDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ +GA+ IV      L+D    +      + V N  K L   AS  YG   E +  +
Sbjct: 54  GSAVEKGAKVIV------LEDLPEILDETITYIKVKNLSKVLGQLASNFYGNPSEKLNLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV++ +  + +  G  S  I      I      +  TTP  + L + L+  
Sbjct: 108 GVTGTNGKTSVSTLLFDVFKNLGYPSALISTVEYRIGDEVFPSTHTTPDVVKLNELLAKA 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +QG  +  +E SSHG+ Q+R +G+      FTN+  DH+DYH+T   Y N K   F+ L
Sbjct: 168 VAQGCEYAFMEVSSHGIHQNRTEGLHFKVAGFTNITHDHLDYHKTFLEYLNTKKSFFDNL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + AI   DD      +    N   +  +   +    +  ++  +     + ++  G
Sbjct: 228 -PDSAVAITNLDDKNG---LVMLQNTKAKKKTYALKTLSDYHGRLLEVDFNGML-LNFNG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+      L G+F VYN L+  G+   +G D   +L  + +L  V GRFE + +   G  
Sbjct: 283 KE--VWTSLTGKFNVYNLLLVFGIARELGFDEVEILTAISQLKRVNGRFETIKSEG-GIF 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE IL +I  I +    +I VFGCGGDRD  KRP MGKIA   + +AI+
Sbjct: 340 FVVDYAHTPDALENILDSINEIRTKNERLISVFGCGGDRDHSKRPEMGKIATQKSTLAII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+EDP  I  EI  G+       +    +R EAI+ AI+    +D+++VAGKGHE
Sbjct: 400 TSDNPRTEDPNTIIQEIEAGVEPQCFSKYTVVPDRREAIKMAIKFAEPKDIILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               V NG K    D ++I E+
Sbjct: 460 IYQEV-NGVKHHFDDKEVILEL 480


>gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
 gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
          Length = 491

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/503 (31%), Positives = 244/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADD  S  + K        V++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQK---ATAAHVITFGIKQQADFKASNIRITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      D++++AGK
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQVIGD-EVIDFDDRVEAR 481


>gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. NATL1A]
          Length = 509

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 150/500 (30%), Positives = 246/500 (49%), Gaps = 21/500 (4%)

Query: 14  LINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+  + +         +I  +S+DSR I+ G +F+ + G K DG  F  +AI +GA A +
Sbjct: 8   LLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIERGACAAI 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +S   SL +       +  +++ +    F+   A+  +GK      ++ +TGT+GK++ +
Sbjct: 68  ISKKASLLNPPTN--EDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTTS 125

Query: 131 SFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ +    G  S   G   +   ++ + ++ TT   + L   L      GV + ++E 
Sbjct: 126 FLIEFLTTSLGHPSALFGTLINRWPNYEETSKYTTTFAVPLQAKLRKAVQAGVEYGAMEV 185

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYA 248
           SSH L Q+R+ G       FTNL RDH+DYH + ++YF AK  LF   L+  + P  +  
Sbjct: 186 SSHALSQNRVAGCDFNGAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDDDGPRSVIN 245

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            D     ++ +  N  C   S+    +      +++  +  + +     +       +F+
Sbjct: 246 IDDKWGSILAKELNKKCWTCSLKENSQIREKPDLYISNLQIMQDGYMGKLHTPFGVGNFI 305

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-----I 358
            PL GEF + N L A G+ +  G+    +LE L K   VPGR + +  +    +     +
Sbjct: 306 SPLIGEFNLMNMLQAIGILVQRGLPLNDLLEALNKFPGVPGRMQLINMDGFKVKDGYPLV 365

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + L+  L   R++T  R+I VFGCGGDRD+GKR  MG++A   AD  +VT D
Sbjct: 366 IVDYAHTPDGLQNALIASRSLTKKRLICVFGCGGDRDKGKRSKMGEVAAKFADYIVVTSD 425

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR EDP +I  +I  GI        +  R  AI+ AI    K DV+++AGKGHE   I+
Sbjct: 426 NPRQEDPIEIIKDIQKGITIDSEISVEPERSIAIQFAIAKAKKNDVVLIAGKGHEDYQIL 485

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D +  R+ L L
Sbjct: 486 KDQTI-YFDDREQARKALSL 504


>gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL N1-067]
          Length = 491

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/506 (29%), Positives = 242/506 (47%), Gaps = 35/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +     ++++++ DSR +  G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A   GA A++      +           P++ V +T++ +++ A+  YG   +   +
Sbjct: 53  AKKAEELGAVAVIAEKPIEVA---------IPVIYVRDTKRAMAMLANYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + SG  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +
Sbjct: 164 MLLRGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADD  S   ++        V++ G  +        +    +   
Sbjct: 224 LGNSYHASNPKIAVLNADDEES---VRMQTATAAHVITFGIKENADFRATNIEITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             ++     F     + G F VYN L A     A+ I     +  +E +  V GRFE V 
Sbjct: 281 FDLTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVN 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDY+HT + L  +L+ I    + R+ VV GCGGDRD+GKRP M KIA+  A
Sbjct: 341 A-GQDFPVIVDYSHTPDGLLNVLQTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              + T DNPRSE+P  I  ++I G+P    ++   NR +AI+ AI      DV+++AGK
Sbjct: 400 TNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE   I+ + E     D    R  +
Sbjct: 460 GHENYQIIGD-EVINFDDRVEARLAI 484


>gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
 gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
          Length = 495

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/512 (31%), Positives = 246/512 (48%), Gaps = 41/512 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L      EL+  ++       + +I  + +DSR +  G +F+ + G+  DGH + 
Sbjct: 1   MRLSEL-----AELL--ITARLTGAGDTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA A+GA A VV     L         + P L+V ++R  +++ A   YG HP N L +
Sbjct: 54  PQAAAKGAVAFVVERELEL---------DAPQLIVKDSRLAMAVLADHFYG-HPSNALHL 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSY 176
            G +G +   +    I Q    +    G   T+    +  +     TTP  + L + LS 
Sbjct: 104 IGVTGTNGKTTTTYLIEQILNDNDRNSGVIGTVEMRYAGKSFPMSGTTPEALQLQQYLSD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +G  + ++E SSH L+Q R+ G +     FTNL +DH+DYH T + Y  AK   F  
Sbjct: 164 MRKEGTAYCAIEVSSHALEQGRVKGCRFRTAVFTNLTQDHLDYHGTMEKYAAAKGLFFSR 223

Query: 237 LLP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNK 288
           L           + A++  DD  S++  K        V++ G      +    +      
Sbjct: 224 LGNEYAAKAEDRAYAVLNVDDPVSEQFAKLTA---AEVITYGIDNHADVRASNIRISAQG 280

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +S      D    + G+F VYNAL A    +  G+    +   LE +  VPGR E 
Sbjct: 281 TTFRVSTFRGKTDIALQMVGKFNVYNALAAISAALIEGVALERIKASLEAVPGVPGRVES 340

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +   + VDYAHT + LE +L+ ++ +   RII VFGCGGDRD+ KRPIMG IA  
Sbjct: 341 VQA-GQEFAVVVDYAHTPDGLENVLRAVKELAPPRIICVFGCGGDRDRTKRPIMGSIAAR 399

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDV 461
            AD  +VT DNPR+EDP+ I  +I  G+         +  K +R  AI  A+EM +  DV
Sbjct: 400 YADYVLVTSDNPRTEDPDLILKDIEAGLLKDGITSDRYELKVDRRAAIEKAVEMASPGDV 459

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHET  I+ +       D  + +E +
Sbjct: 460 VLIAGKGHETYQIIGS-VTHPFDDRLVAKEAI 490


>gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. Y412MC61]
 gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
 gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC61]
 gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
          Length = 489

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 249/505 (49%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+    P        +        I  +  DSR +  G +F  + G   DGH F 
Sbjct: 1   MKLLTLLS-HLP------GFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+A+GA AIV     S+         + P+++V ++R+ +++ A   YG+    +  +
Sbjct: 54  EEAVARGAAAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++  S ++QI +++G  +  IG     +   +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  LF +L
Sbjct: 165 VDEGVEFVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
             +        A++  DD  S+      H     +++ G + K  +  +++         
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQY---YKHMTAAPIVTYGMREKSDVMAEQIRITAGGMAF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L AA  C+A G     +   L  +  VPGRFE V  
Sbjct: 282 RLCTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   I VDYAHT +SLE  LK +R +    + VV GCGGDRD+ KRP+M ++A+  AD
Sbjct: 341 EGQNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRYAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +AI T DNPRSEDP++I  ++  G+       +   +R EAIR AI    + DV+++AGK
Sbjct: 401 VAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGK 460

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHET  I+ N +     D  + R  
Sbjct: 461 GHETYQIIGN-DVIEFDDRAVARAA 484


>gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc punctiforme PCC 73102]
 gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC
           73102]
          Length = 500

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/500 (33%), Positives = 257/500 (51%), Gaps = 15/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+     + + QL+  P    + ++  + ++S     G +F+ + G + DG  F 
Sbjct: 1   MKLRELLTAV--DSVEQLASHPT-LEDVEVRGLKTNSHACGVGDLFIGMPGTRVDGGEFW 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AIA GA A +VS   + ++          ++   N  +  +  AS  YG   + +  +
Sbjct: 58  QSAIASGAVAAIVSPEAAQKNPPTN---EAVVISASNITQACAQIASAFYGYPGQKLKLV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ +  ++ L++  +G   T  + F Q    TTP  + L + L+  
Sbjct: 115 GVTGTNGKTTTTHIIEFLLIKANLATALMGTLYTRWAGFEQTAAHTTPFAVELQQQLAEA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G     +E SSH L Q R+ G +     F+NL +DH+DYH+  + YF AK  LF   
Sbjct: 175 VNAGSEFGVMEVSSHALAQGRVLGCQFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPD 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   AII ADD+Y K ++    +      SV      + +  +    N     +    
Sbjct: 235 YLK-GRAIINADDSYGKRLIASLDSERVWSYSVNDNSADLWMSDLSYEPNGVSGILHTPK 293

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356
            D  F  PL G++ + N L A G  + +G+D  LV   + +   VPGR E V  N  +  
Sbjct: 294 GDVAFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQDI 353

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRPIMG+IA +LAD+A+VT
Sbjct: 354 SVIVDYAHTPDSLENLLKAARPFIPGKVICVFGCGGDRDRTKRPIMGRIAAELADVAVVT 413

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E+PE+I  +++ GI   +      +R  AIRTAI      D +++AGKGHE   
Sbjct: 414 SDNPRTENPERILEDVLAGIAQTVKPMVICDRATAIRTAILQAQPGDGVLLAGKGHEDYQ 473

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R+ L
Sbjct: 474 ILGT-EKIHFDDREHARDAL 492


>gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
 gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
          Length = 496

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 163/500 (32%), Positives = 252/500 (50%), Gaps = 19/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       ++ +        + +I  + ++S     G +F+ + G + DG  F 
Sbjct: 1   MKLRELLAA-----VDGVDY--QGLADAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFW 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AIA GA A +VS A   ++          +L   +  +  +  A+  YG   + +  +
Sbjct: 54  QSAIASGALAAIVSPAALQKNPPT---GEAVVLSAADMTQACAQLAAAFYGYPGQKLKLV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ +  ++ LS+  +G   T    F Q    TTP  + L + L+  
Sbjct: 111 GVTGTNGKTTTTHLIEFLLTKANLSTALMGTLYTRWPGFEQTAVHTTPFAVDLQQQLAEA 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G    ++E SSH L Q R+ G +     F+NL +DH+DYH   + YF AK  LF   
Sbjct: 171 VNAGCEFGAMEVSSHALAQGRVLGCEFEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPE 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   AII ADD Y + ++    +      SV      + +  +    N     +    
Sbjct: 231 YLK-GRAIINADDDYGQRLIASLSSERVWSYSVNNHSADLWMSDLSYEPNGVSGMLHTPK 289

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
            +  F  PL G++ + N L A G  + +G+D  LV   + +   VPGR E V  N  +  
Sbjct: 290 GNVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEI 349

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP MGKIA +LAD+A++T
Sbjct: 350 SVIVDYAHTPDSLENLLKAARPFIPGKMICVFGCGGDRDRTKRPKMGKIAAELADVAVLT 409

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDPE+I  +++ GIP  +      +R  AIRTAI      D +++AGKGHE   
Sbjct: 410 SDNPRTEDPERILQDVLAGIPDTVKPTVICDRAIAIRTAILQAQPGDGVLLAGKGHEDYQ 469

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R+ L
Sbjct: 470 ILGT-EKIHFDDREHARDAL 488


>gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 491

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/503 (31%), Positives = 244/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADD  S  + K        V++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQK---ATAAHVITFGIKQQADFKANNIRITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGK
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQVIGD-EVIDFDDRVEAR 481


>gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 483

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/506 (29%), Positives = 243/506 (48%), Gaps = 36/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+DL+          + I  ++  E  +I  + +DSR   AG  F+A+ G + DGH +
Sbjct: 1   MKLKDLLK--------GIDIVEIKGNENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  A+  GA+ ++            T R     + V ++       A+  YG     +  
Sbjct: 53  INNALDLGAKVVIHQEKVD------TSREGITYIKVKDSADAAGKIATLWYGDPSAKLKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++ A+ + ++ ++ G     +   +  I         TTP P+ L + L+ 
Sbjct: 107 VGVTGTNGKTTTATLLYEMFRKFGNKVGLLSTVANYIDGTVYHATHTTPDPLSLNEMLAK 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  +  +E SSH + Q R+ G+K   G FTN+ +DH+DYH+T   Y  AK   F+ 
Sbjct: 167 MVDAGCEYAFMEVSSHAIHQKRISGLKFDGGIFTNITQDHLDYHKTMAEYLKAKKMFFDN 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV 295
           L P+ + A+  ADD     ++    N   +  +   +       K +    +   V  + 
Sbjct: 227 L-PETAFALTNADDKNGAVML---QNTKAKKYTYSVKTLADFKAKIIEKHFDGTAVEFN- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              + +      G F VYN L   G  + +G D    L  L  L  V GRFE + +    
Sbjct: 282 ---NKELQVQFVGVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLRSPEN- 337

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               VDYAHT ++L  +L+ I  +   +GR+I V GCGG+RD+ KRPIM + A+ L+D  
Sbjct: 338 YTAIVDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLSDQV 397

Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I+T DNPR E+P+ I  ++  G     +   +    R +AI+TA  +  + DV+++AGKG
Sbjct: 398 ILTSDNPRFEEPQAIINDMADGLNSQQMKKTLLIVEREQAIKTACTLAKEGDVILIAGKG 457

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE    V  G K    D +++R I G
Sbjct: 458 HEDYQDVK-GVKHHFDDREVVRNIFG 482


>gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 487

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/485 (32%), Positives = 242/485 (49%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IF     +  I E++ DSR+++AG +F+A+ G + DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFAHAGHDLLIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY +Q  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVQGATVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G          +    TTP+PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDLLGQHCGIVGTLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T QAY  AK +LF          +I  DD 
Sbjct: 179 HGLDQGRVTALAFDVAVLTNLSRDHLDYHGTMQAYGEAKAKLFA--WNDLKCRVINLDDE 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++      +     S+   G ++++++        + T+     +      L G F 
Sbjct: 237 FGRQLAAEKRESRLITYSLEDAGAYLYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L+ L KL    GR + +G  ++   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAIGALLGLDYALDEILKVLPKLEGPAGRMQRLGGGTQ-PLVVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +R    G+++ +FGCGGDRD+GKRP+M ++   LAD  +VTDDNPR+EDP++I  +
Sbjct: 356 VLTALRPHAKGKLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPQRIFDD 415

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G   +        R +AI   I   +  DV+V+AGKGHE    + NGE+    D   
Sbjct: 416 IRAGFMAVDNVTFVAGRGQAIAQLIASASADDVIVLAGKGHEDYQEI-NGERHAFSDLVE 474

Query: 489 IREIL 493
               L
Sbjct: 475 ADHAL 479


>gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 491

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/506 (29%), Positives = 242/506 (47%), Gaps = 35/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +     ++++++ DSR +  G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A   GA A+V      +           P++ V ++++ +++ A+  YG   +   +
Sbjct: 53  AKKAEELGAVAVVAEKPVDVT---------IPVIYVRDSKRAMAMLANYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + SG  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +
Sbjct: 164 MLLRGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADD  S   ++        V++ G  +        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDEES---VRMQTATAAHVITFGIKENADFRATNIEITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             ++     F     + G F VYN L A     A+ I     +  +E +  V GRFE V 
Sbjct: 281 FNLTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVN 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDY+HT + L  +L+ I    + R+ VV GCGGDRD+GKRP M KIA+  A
Sbjct: 341 A-GQDFPVIVDYSHTPDGLLNVLQTIDEFANKRVFVVVGCGGDRDKGKRPQMAKIAVQYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              + T DNPRSE+P  I  ++I G+P    ++   NR +AI+ AI      DV+++AGK
Sbjct: 400 TNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE   I+ + E     D    R  +
Sbjct: 460 GHEDYQIIGD-EVIDFDDRVEARLAI 484


>gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Listeria monocytogenes str. Scott A]
          Length = 494

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 154/498 (30%), Positives = 242/498 (48%), Gaps = 27/498 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F  +A+
Sbjct: 1   MARMKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
             GA AI+      +         + P++ V ++++ +++ A   YG   +   ++ +TG
Sbjct: 61  ELGAVAIIAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    +   G
Sbjct: 112 TNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSG 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +L    
Sbjct: 172 VSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSY 231

Query: 242 -----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  A++ ADD  S  + K        V++ G  Q        +    +     +  
Sbjct: 232 HTSNPKIAVLNADDEESVRMQK---ATAAHVITFGIKQQADFKASNIRITSHGSTFDLRT 288

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V    + 
Sbjct: 289 PIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA-GQE 347

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   I 
Sbjct: 348 FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIF 407

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE  
Sbjct: 408 TSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHEDY 467

Query: 473 HIVTNGEKKMSVDCDIIR 490
            ++ + E     D    R
Sbjct: 468 QVIGD-EVIDFDDRVEAR 484


>gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
 gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
          Length = 492

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/504 (31%), Positives = 234/504 (46%), Gaps = 25/504 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   + P L+   +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNIPPLLCANAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            AIA GA  +          F+       P   + + +    + A+++YG   +++    
Sbjct: 55  AAIANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDDLKVWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R       +   GY   +   I +    A  +  +     
Sbjct: 230 HGLKHAVINVDDEYGVELAGRLKKDCPDLTVYGYGFSEHADIRIVHFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 SWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVERAASSDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
             V  G K    D +I  + L  +
Sbjct: 469 QDV-QGVKHHFSDFEIAEKALAEL 491


>gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria innocua Clip11262]
 gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262]
          Length = 491

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 248/503 (49%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+        EL+  + ++  +     ++N+++ DSR +Q G +F+ I G   DGH F
Sbjct: 1   MKLK--------ELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P+L V ++++ +++ A   YG   +   +
Sbjct: 53  ADRAVQLGAVAIIAEKQLDV---------SVPVLYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQ 223

Query: 237 L-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L     L     A++ ADD   KE ++        +++ G  +        +    +   
Sbjct: 224 LGNSYNLSNPKIAVLNADD---KESVRMQTATAAHIITFGIKEPADFSASNIQITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     DF     + G F VYN L A     A+ I     +  +E +  V GRFE V 
Sbjct: 281 FDLKTPVGDFALKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVN 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDY+HT +SL  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSEDP  I  ++I G+PG   ++   NR +AIR A+ M    DV+++AGK
Sbjct: 400 TNPIFTSDNPRSEDPHAIIEDMIQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQVIGD-EVIDFDDRVEAR 481


>gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 492

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/502 (31%), Positives = 234/502 (46%), Gaps = 25/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   DFP L+   +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETDFPPLLCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 RQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYDAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R       +   GY   +   I +    A  +        
Sbjct: 230 QDLQHAVINIDDEYGAELVCRLKKDCPDLAVYGYGFSERADIRITDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ LEK+    GR + +  NS  
Sbjct: 290 PWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+      D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPNPERVEADRAAAIRYAVGRAAVNDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             V  G K    D ++  + L 
Sbjct: 469 QDV-QGVKHHFSDFEVAEKALA 489


>gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
 gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
          Length = 484

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/505 (31%), Positives = 253/505 (50%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I  ++        ++I+ ++ DSR I+   IF+A+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDMA--------QEISGINMDSRLIEPDHIFIAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I      I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F+ 
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDS 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK + A+   DD      +    N   +V +   +       KV     +  +   ++
Sbjct: 227 L-PKTAFALTNLDDKNG---LVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGML---LD 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  +    G +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    +  G K    D +++R+I  
Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIFA 482


>gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
 gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
          Length = 494

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/500 (33%), Positives = 248/500 (49%), Gaps = 19/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+            +   +  + +++ + ++S    AG +F+ I G + DG  F 
Sbjct: 1   MKLRELLAAV-------DGVEYPKTGDVEVDGIKTNSDDCGAGDLFIGIPGTRVDGGEFW 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+A GA A +VS     ++        + ++   N  K  +  ++  YG   +   +L
Sbjct: 54  QSALASGAVAAIVSPEAVQKNPPT---PESLVISASNMNKACAQISAAFYGYPGQQLRML 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    +  L +  +G   T    F+Q    TTP  + L + L+  
Sbjct: 111 GVTGTNGKTTTTHLIEYFLTKVNLPAALLGTLYTRWPGFSQTAAFTTPFAVDLQQRLAQA 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH L Q R+ G       FTNL +DH+DYHQ  + YF AK  LF   
Sbjct: 171 VDAGCEFGVMEVSSHALAQDRVFGCPFEVAVFTNLTQDHLDYHQDMEDYFGAKALLFSPD 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   AII ADD Y + ++           SV      + +  +          +    
Sbjct: 231 YLQ-GRAIINADDEYGQRLITGLSKERVWTYSVNNHHADLRMSDLNYQPIGVSGILHTPK 289

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356
            D  F  PL G++ + N L A    + +G+D  LV   + K   VPGR E V  + ++  
Sbjct: 290 GDVAFSSPLVGQYNLENLLAAVAAVLHLGLDLQLVANAISKFTGVPGRMERVQISHNKDV 349

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SL  +LK++R    GRII VFGCGGDRD+ KRP MGKIA +LADIA+VT
Sbjct: 350 SVIVDYAHTPDSLGNLLKSVRAFIPGRIICVFGCGGDRDRTKRPKMGKIAAELADIAVVT 409

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDPE+I  +I+ GIP  ++     +R  AIR AI      D +++AGKGHE   
Sbjct: 410 SDNPRTEDPERIIEDILAGIPDTLQPMVICDRATAIRAAILEAKPGDGVLLAGKGHEDYQ 469

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  RE L
Sbjct: 470 ILGT-EKIHFDDREQAREAL 488


>gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 503

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/489 (35%), Positives = 260/489 (53%), Gaps = 8/489 (1%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I K   EL         +   R+++ ++ DSR ++ G +F A+ G +  G  F+ +A+  
Sbjct: 6   ITKSLAEL-GLHGATGARGSARRVSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKA 64

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA AIV   A +       I     ++V+ + R  ++  A+  +G  P  + AVTGT+GK
Sbjct: 65  GATAIVTDPAGAAIIGDTLIGQEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +SV SF++QI Q +G  +  IG T     +    + TTP  + L + LS  +  GVTH +
Sbjct: 125 TSVTSFLRQIWQYAGHKAINIGTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAA 184

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASSHG++Q RL+G+ L    FTN  +DH+DYH+T  AYFNAK  LF  LLP++  A+I
Sbjct: 185 MEASSHGIEQRRLEGVMLSVAGFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVI 244

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD    ++ + A + G  +L VG   G  + L         Q +     G+ +     
Sbjct: 245 NIDDPKGADIARVAEDRGQEILGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRLD 304

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G FQ  N L+AAGL IA G D A V      L  V GR +       G  ++VD+AHT
Sbjct: 305 LIGGFQAENVLLAAGLAIASGDDPAHVFAAFPHLTTVRGRMQLAARRGNGASVFVDFAHT 364

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++E +L+ IR    GR++ + G GGDRD+ KRP+MG  A   AD+ IVTDDNPR+ED 
Sbjct: 365 PDAIETVLQAIRPHVMGRVVAIVGAGGDRDRTKRPLMGAAAARFADMVIVTDDNPRTEDA 424

Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             IR  ++ G          E G+R EAI   ++ML   D L++ GKGHE+  IV + + 
Sbjct: 425 ATIRDAVMAGAVAEGGCDVREVGDRAEAILRGVDMLEAGDALIICGKGHESGQIVGH-DV 483

Query: 481 KMSVDCDII 489
               D +  
Sbjct: 484 LPFDDVEQA 492


>gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
 gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
          Length = 471

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 239/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A+V  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMAEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWGQALGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINADDEVGRRWLSQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G++G ++   +V    N   ++         F   L G F V N LVA    +++
Sbjct: 239 NNVPAGWKGPWLSATQVDYHDNGASISFDSSWGQGQFESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L    +L  V GR E      +   + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLAAAPQLLPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHAQAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    + DV+V+AGKGHE   +V N     S D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKEDDVVVIAGKGHEDYQLVGNRRLDYS-DRVTVARLLGVM 470


>gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 492

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/497 (32%), Positives = 245/497 (49%), Gaps = 28/497 (5%)

Query: 13  ELINQLSIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           ELI  L             +I +V+ D+R ++ G +FV I+G+ +DGH    +A+ +GA 
Sbjct: 5   ELIKPLKTTNFSKDFSENLEITKVTQDTREVEPGSLFVCIIGSVQDGHELAKEAVQKGAT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            +V S    +           P++ V++T K +++ A+  Y    +++  + VTGT+GK+
Sbjct: 65  LVVASEPIEVA---------VPVIYVNDTMKAMAILAATFYHHPSQDLRVIGVTGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +V   +  I       +  IG     I S   + + TTP  I L K L  +   GV   S
Sbjct: 116 TVTHLLDYIFHDHKEKTGVIGTMYRRIGSKVYETKNTTPDSITLQKTLREMQDSGVATCS 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-----KE 241
           +E SSH L Q R+ G       FTNL +DH++YH T + Y  AK  LF +L       K 
Sbjct: 176 MEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQGKP 235

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AI+  DD   +   ++      RV S G  Q        +   +   +  ++ E + +
Sbjct: 236 KFAILNFDDPVGRSFEEKTA---ARVFSYGIDQPADFKATDLSITNRGTRFNLNFENRVY 292

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G+F V NAL A     A G+D   V++ +EK+  V GRFE V        + V
Sbjct: 293 EVQLQLVGKFNVSNALAAIAGAYAAGLDLTSVIQSIEKISGVRGRFEIVK-GDHDFAVIV 351

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + L  +L  +  I +G +  V GCGGDRD+ KRPIM +IA   +D  I T DNP
Sbjct: 352 DYAHTPDGLLNVLNAVNEIKTGTVFCVVGCGGDRDRTKRPIMAEIAQQNSDTVIFTSDNP 411

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           R+EDP  I  E++ G+    +    +R EAI+ AIE  N  D++++AGKGHE   I+   
Sbjct: 412 RTEDPIAILHEVVDGLEEGTYQLIPDRREAIQAAIEQANTNDIVLIAGKGHEDYQIIGT- 470

Query: 479 EKKMSVDCDIIREILGL 495
           EK    D +  +  + L
Sbjct: 471 EKIHFDDVEEAKRAIDL 487


>gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 494

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/497 (32%), Positives = 247/497 (49%), Gaps = 20/497 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++ +   +L+    I         + ++  DSR +  G +FVAI G++ DG  FI QA+A
Sbjct: 1   MLSRALDQLMRPFGITAPALA---LTDIQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVA 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
           QGA A++                  P L + +    LS  A   Y +    +  + +TGT
Sbjct: 58  QGATAVLFEEDGEF----VAPALGVPCLGIPDLPARLSELAGYFYDQPASKLDLVGITGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GKS+ A  V   C   G  +  +G     +     +   TT S + +   L+ L +QG 
Sbjct: 114 NGKSTTALLVANWCTLLGGKAGVMGTIGNGLFGELVEAENTTGSAVQVQANLAALQAQGA 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++E SSHGL QHR+  +   A  FTNL RDH+DYH T +AY  AK  L +  L  E 
Sbjct: 174 DLVAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVAEP 231

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            A++ ADD   ++ +     A    +     G+ G+ +  +         +  I+    +
Sbjct: 232 CAVLNADDRLGRQWLAAYPAAVAFSVHGPVAGHPGRQLTAQDPHFHQQGFRTQINSSWGN 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G F V N L A G  + +G D   +L    +L  V GR E  G   +     
Sbjct: 292 GVLSAPLLGRFNVSNVLAAMGAMLVLGYDFDELLASAPQLQPVTGRMECFG-GGKAPLAV 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L+ +R    GR+  + GCGGDRD+GKRP+M  +A   AD  I+TDDN
Sbjct: 351 VDYAHTPDALEKALQALRVHCEGRLWCLVGCGGDRDRGKRPMMAAMAELHADRVILTDDN 410

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR+E+P +I A+++ G+  PG ++   +R +AI  A+   +KQD+++VAGKGHE   I+ 
Sbjct: 411 PRTEEPARIMADMVAGLRDPGAVQIEHDRTKAIELALSQASKQDIILVAGKGHEDYQIIG 470

Query: 477 NGEKKMSVDCDIIREIL 493
             +K+   D + +   L
Sbjct: 471 T-DKRHYSDRETVAAAL 486


>gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 487

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/501 (30%), Positives = 249/501 (49%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   E +   +          I ++  DSR I A  +FVAI G   DGH FI  
Sbjct: 4   LKDILYKVAIESVKGSTA-------VDIKKIHFDSRLISAQDVFVAIKGETADGHAFIEA 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+A GA  +V        +  + +      + V + R+ L++ AS  Y        ++ V
Sbjct: 57  AVANGANVVVCE------ELPSEVIPEVSYIQVKDCREALAVMASNYYDNPSANLKLIGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V S + Q+ +  G     I      +       +LTTP  + +   L  ++ 
Sbjct: 111 TGTNGKTTVTSLLYQMFKTLGYKVGLISTVVIKVDDKDYPTKLTTPDSLTINSYLKEMNE 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV    +E SSHG+ QHR  G+    G FTNL +DH+DYH+T   Y + K R F++L  
Sbjct: 171 VGVEFCFMEVSSHGIAQHRTLGLNFEGGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQLSK 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K   A+   DD     ++    N   +    G +    +  K+        + +++ G +
Sbjct: 231 K-GFALTNVDDKNGNYML---QNTKAKTFGYGVKNLTDYKVKILEKSF-SGLKLNINGTE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                   G+F  YN L    +   + +     L++L +L  V GR++    +S G  + 
Sbjct: 286 --VWSRFIGDFNAYNLLAVYAVADLLEVKDIENLQNLSQLKPVEGRYQH-HMSSTGIHVI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+    I S    +I V GCGGDRD  KRP+MGKIA +L+   I+T 
Sbjct: 343 VDYAHTPDALQNVLQTTNDIRSRSEELITVVGCGGDRDTTKRPLMGKIAGNLSTKVILTS 402

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+EDP+ I  +I  G     +   +   +R +AI+TA  +  ++D++++AGKGHET 
Sbjct: 403 DNPRTEDPDSIIKDIEKGVEPQDVSKTLSITSRQQAIKTACILAQQRDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + NG +    D  I++E+L
Sbjct: 463 QEI-NGIRSDFDDLKIVKELL 482


>gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 493

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/497 (30%), Positives = 238/497 (47%), Gaps = 23/497 (4%)

Query: 10  DFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +  +L+  L+ + +       +I  +  DSR I +G  FV I G   DGH ++ QA+  G
Sbjct: 2   ELKKLLECLTFYNVNGEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAVKNG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A AI  S     +          PI+ V++T + L++ A + Y    +   ++ VTGT+G
Sbjct: 62  ASAIFTSKPLMKE-------YGVPIIQVEDTNRALAMLAVKYYDYPTKHFPLIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++V   + +I +     +  IG     I         TTP+ + L K    +  + V  
Sbjct: 115 KTTVTYLLDKIFEYHQKKAGVIGTIQVKIGEETFPIVNTTPNALELQKTFHVMREKDVKQ 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-- 242
             +E SSH LD  R+ G       FTNL +DH+DYHQ  Q Y  AK  LF +L       
Sbjct: 175 GIMEVSSHALDMGRVYGCDYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSE 234

Query: 243 --PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                I  DD  S  ++KR+        S   +   +  K +    +  +  +     + 
Sbjct: 235 KEKYAIINDDDSSSHLLKRSTAQHVITYSCKKEATIM-AKDIELTASGIRFKLHSPLGNI 293

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G F VYN L A+   IA  +   ++ + LE +  V GRFE +    +   + V
Sbjct: 294 TIQSRLMGMFNVYNMLAASAAAIASKVPLNVIQQALESIEGVNGRFEPI-VEGQNYSVIV 352

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AHT +SLE +L+ I+      + VV GCGGDRD+ KRP+M ++AL+ AD A+ T DNP
Sbjct: 353 DFAHTPDSLENVLQTIKDFAKRNVYVVVGCGGDRDRKKRPLMAEVALNYADHAVFTSDNP 412

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R+EDP+ I  ++   +      +    +R E I  AI+   K D++++AGKGHET  I+ 
Sbjct: 413 RTEDPQAILDDMTAELDANSGSYEVVVDRKEGIAKAIQSAQKDDIVLIAGKGHETYQIIG 472

Query: 477 NGEKKMSVDCDIIREIL 493
           +  K    D D+ R  +
Sbjct: 473 H-TKYDFDDRDVARNAI 488


>gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Laribacter hongkongensis HLHK9]
 gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9]
          Length = 491

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/469 (32%), Positives = 225/469 (47%), Gaps = 15/469 (3%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V+SDSR +  G +F+A  G   DG  +I  AI++GA A+    A     F        
Sbjct: 24  DRVTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPA---DGFEWQPGWTV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P L V + R    + AS L G+  E   ++ VTGT+GK+S+ +++ Q     G  +  IG
Sbjct: 81  PNLPVPDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAALIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                      D   TTP P+ + + L+    QG   V++E SSHGLDQ R++G+     
Sbjct: 141 TVGNGFFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFGTA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH +  AY   K RLF         A+I  DD + +E+  R      +V
Sbjct: 201 VFTNLTRDHLDYHGSMAAYGATKERLFH--WQGLQHAVINVDDQFGRELASRCTAG--QV 256

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G +   +    V A      + ++             G F   N L    +    G+
Sbjct: 257 ITYGLEHGDVRPMAVHASLEGLAMELATPWGHGRIESAFLGRFNASNLLACLAVLCVNGV 316

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRII 385
                   L ++    GR + VG  +R   + +DYAHT ++LE  L  +  I    GR+ 
Sbjct: 317 PLTQACRVLGQIQPARGRMQRVG-GTREPLVVIDYAHTPDALEKALSTLADIKPAGGRLF 375

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGN 444
            VFGCGGDRD+GKRP+MG IA   AD+ +VT DNPR+E P+ I  +I+ G+    + + +
Sbjct: 376 AVFGCGGDRDRGKRPLMGDIAERFADVTVVTSDNPRTESPQVIIDDILAGMRQPTQVEPD 435

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R  AI  A+      DV++VAGKGHE    +  G K    D       L
Sbjct: 436 RRAAIHWAVAQARVGDVVLVAGKGHEDYQDI-QGVKHSFSDVREAEAAL 483


>gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus YJ016]
 gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016]
          Length = 515

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/503 (33%), Positives = 258/503 (51%), Gaps = 24/503 (4%)

Query: 1   MKLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L +L+    D PEL            +  +  +  DSR ++ G  FVAIVG+  DG  
Sbjct: 27  MNLTNLLAPWLDCPELA-----------DITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 75

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +I +AI QGA A++  S           + N  I+ ++   + LS  A RLY     +++
Sbjct: 76  YIEKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLI 135

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++   + Q  + +G  +  +G T     +  Q    TT + + + K L+ L
Sbjct: 136 GVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADL 195

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +AY  AKM LF E 
Sbjct: 196 QQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE- 254

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   AII  DD    +  +         L          L      + +  +TI  +G
Sbjct: 255 -HQCQHAIINLDDEVGAQWFQELQQGVGVSL-FPQDASVKALWASSVAYAESGITIEFDG 312

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                    PL GEF   N L+A    +A+G+D   +L+    L  V GR E    NS+ 
Sbjct: 313 CFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSK- 371

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  LAD  ++
Sbjct: 372 AKVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVL 431

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AGKGHE  
Sbjct: 432 TDDNPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDY 491

Query: 473 HIVTNGEKKMSVDCDIIREILGL 495
            ++ +     S D +  +++LG+
Sbjct: 492 QVLKHQTVHYS-DRESAQQLLGI 513


>gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcus flavefaciens FD-1]
          Length = 479

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/504 (30%), Positives = 237/504 (47%), Gaps = 35/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+  +             +    +I  ++ D+R +  G +FV + G   DGH   
Sbjct: 1   MKLYDLLENN----------AETKLGNIEITSITDDTRKVAEGCLFVCVKGGSFDGHTAA 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            + + +GA A+V      L D           ++ DN+R+   +  S  +G   + +  +
Sbjct: 51  AEMLEKGAAAVVCEHDLGLGDR---------QILTDNSRRLYGMMCSAWFGHPEKKLHMI 101

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++ + ++ I  ++G  +  +G     I         TTP    L   L  +
Sbjct: 102 GVTGTNGKTTITNVIKHILMKNGHKTGLVGTIQNEIGDEIVHTENTTPMAYDLMALLDRM 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SS GL Q+R+         FTNL +DH+DYH+  + Y+ AK  LF+  
Sbjct: 162 VKAGCEYVVMEVSSFGLVQNRIGASWFDTAVFTNLTQDHLDYHKDMEDYYQAKKMLFD-- 219

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
                 A++  DD Y K +       GC   S   +G        +              
Sbjct: 220 --ICDCALVNIDDEYGKRLYGEI---GCEKQSFSVKGCADYTADGIKIKSTGSSFWFCKG 274

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK       +PG F V N   A  +C+  G+    ++  +E+ + V GR E + T  R  
Sbjct: 275 GKSHLVKCRMPGAFNVSNITAAMAVCLRAGLSVDDIIAAVEEYNGVKGRCEVIPT-GRDF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DYAHT ++LE IL+++R  T  R+I +FGCGG+RD  KRP M   A   AD  IVT
Sbjct: 334 TVICDYAHTPDALENILRSVREYTDNRLICLFGCGGNRDAAKRPKMAAAAAKFADRLIVT 393

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDPE I  EI+ G+      +    +R EAI  A+++  K D++V+AGKGHE  
Sbjct: 394 SDNPRNEDPELIIKEILTGLEDSDIPYDVVVDRREAIYHALKIAEKGDIIVLAGKGHEDY 453

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+   E     + +I+ E L L+
Sbjct: 454 QILAGMEHIHFDEREIVAEGLKLL 477


>gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
 gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
          Length = 491

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/503 (31%), Positives = 244/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADD  S  + K        V++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQK---ATAAHVITFGIKQQADFKASNIRITSHGSA 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      D++++AGK
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQVIGD-EVIDFDDRVEAR 481


>gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 493

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/472 (34%), Positives = 250/472 (52%), Gaps = 11/472 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q G  FVA+VG+  DG  FI  AI +GA A++  +       +  I  +
Sbjct: 25  VSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIIDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A +LY      ++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  IPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        ++   TT + + +   L+ L+ Q   + ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSLSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF +   + + AII  DD       K+  NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTQ--HQCAQAIINVDDEVGAAWAKQLTNAIAVSL 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +   +     L      + +  +TI  +G+  +     PL GEF   N ++A    +++G
Sbjct: 263 APTTE-FEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLLSLG 321

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D + +L    +L  V GR E      R  ++ VDYAHT ++LE  L+ +R    G++  
Sbjct: 322 FDKSDLLATAAQLQPVLGRMELFQAEHR-AKVVVDYAHTPDALEKALQALRVHCDGQLWA 380

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443
           +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I  +++ G+      I + 
Sbjct: 381 IFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKDMLAGLSKPAEAIVQH 440

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +R +A+  A+E    QD++++AGKGHE   I  NGE     D +   ++LGL
Sbjct: 441 DRFKALFYALENAAPQDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491


>gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 486

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 187/490 (38%), Positives = 269/490 (54%), Gaps = 13/490 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K    L +   + P + ++  +   + DSR ++ G++F A  G K +G  FI +AIA 
Sbjct: 4   TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAIA- 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
                  + A ++             LV +N R   +  A+R Y   P  + AVTGT+GK
Sbjct: 62  -------AGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SVA   +Q    +G  +  IG    I++       +TTP  +      S L+   ++HV
Sbjct: 115 TSVAELCRQFWMIAGHKAASIGTLGVITAENSYSLGMTTPDVVTFLSCCSDLARADISHV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EASSHGLDQ+R DG K+IAG+FT+  RDH+DYH T + Y  AK+RLF+E +  +  A+
Sbjct: 175 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           ++ADD  +K V+      G +++ +G + + I L    A    Q +T+S++G+ +    P
Sbjct: 235 VWADDPAAKTVIAHVQKRGLKLIDIGEKAEAIRLVNREADSQGQMITLSIQGESYKIRLP 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G +Q+ NALVAAGL +A G D    +  L  L  V GR E    +  G  +YVDYAHT
Sbjct: 295 LIGGYQLSNALVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L   ++ +R  T GR+ VVFG GGDRD+GKRP MGKIA +LAD  IVTDDNPR ED 
Sbjct: 355 PDGLRAAIEALRPHTEGRLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 414

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK---KM 482
             IR EI+ G P   E G R EAI +AI+   K D++++AGKGHE   I+  GE      
Sbjct: 415 ATIRKEILVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 474

Query: 483 SVDCDIIREI 492
             D  + +E 
Sbjct: 475 FDDVTVAKEA 484


>gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 494

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/495 (30%), Positives = 248/495 (50%), Gaps = 22/495 (4%)

Query: 10  DFPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +  E+++ + +      +  + ++  ++ DSR +  G +F A  G+K DG  F   A+A+
Sbjct: 2   NLGEILSSVKLPRPLAPELAQTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADALAR 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++ S + +  D +A        + V++ R  L+L A   +G+  E +    +TGT+
Sbjct: 62  GAVAVI-SESLAPPDLAARW------IQVEHGRHALALAARTFFGRPDERLGLTGITGTN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ A     + + +G  +  IG     ++        TTP  + L +  S L   G T
Sbjct: 115 GKTTTAYLTDSVLRAAGGVTAMIGTIEYHLAGRVLKAVNTTPESLDLLQIFSDLLRAGGT 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKES 242
           HV++E SSH L   R+ G+      FTNL RDH+D+H   + YF AK  LFE        
Sbjct: 175 HVTMEVSSHALALGRVHGLNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGAGGNPPR 234

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD YS+ +  R H    R+         +  + + +     +  +    + F  
Sbjct: 235 FAVLNTDDEYSRRL--RLHARTERLWYGMTPEADLRPRHIVSSFKGLRFDLQFRKQRFTI 292

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G+  VYN L A     + G+   +V   +  L  VPGRFE V    +   + VDY
Sbjct: 293 ESPLIGKINVYNILAACATGFSYGLAPEVVARGIASLKAVPGRFERVD-EGQPFVVVVDY 351

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++L  ++   R +   R+I +FGCGGDRD+ KRP+MGK A + +D  ++T DNPRS
Sbjct: 352 AHTDDALRNVIAVARGLNPRRVITLFGCGGDRDRAKRPLMGKAAAEASDFVVLTSDNPRS 411

Query: 423 EDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           EDP  I  + + GI       + + +R  AIR AI+   + D++++AGKGHET  ++ + 
Sbjct: 412 EDPLTIMNDALVGIRRTDVAHVVEPDREAAIRRAIKEAREGDIVILAGKGHETYQVLKDK 471

Query: 479 EKKMSVDCDIIREIL 493
                 D  + RE+L
Sbjct: 472 TID-FDDRAVAREVL 485


>gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
 gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
          Length = 482

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 236/479 (49%), Gaps = 25/479 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
              +I  + +DSR ++ G +FV + G   D H F              +   +       
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF---------AKQAAAQGAAAIVAERP 60

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           I  + P+++V NT + L++ A   YG+    +  + +TGT+GK++ +  + +I +  G  
Sbjct: 61  IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHK 120

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG  +  I     + + TTP  + L +  S +  QGV    +E SSH LD  R+ G 
Sbjct: 121 TGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGC 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVM 257
                 FTNL +DH+DYH+T + Y +AK  LF +L       +E  A++ +DD  ++E M
Sbjct: 181 DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYM 240

Query: 258 KRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +   +    V++ G      I  K +         T+    +  +    L G+F VYN L
Sbjct: 241 R---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVL 297

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    +  G+    ++  +++L  VPGRFE V    +   + VDYAHT +SLE +LK  
Sbjct: 298 AATAAGLVSGVKLQTIIAVIKELAGVPGRFEVVD-GGQNYTVIVDYAHTPDSLENVLKTA 356

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  I  +++ G 
Sbjct: 357 KQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGA 416

Query: 437 PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            G  +    +R EAI  AI  +   D++++AGKGHET  I+   E     D ++ +E +
Sbjct: 417 SGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII-GKEVHHFDDREVAKEAI 474


>gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
 gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
          Length = 496

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/505 (32%), Positives = 261/505 (51%), Gaps = 30/505 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  E++  L I  +Q   + +I  ++ DSR+++  ++FV I G  +DGH +I +AI  G
Sbjct: 2   KNLNEVVTDLKIGVLQGDLDSRIAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDSG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V            + S   ++  D+TR  L+  ++  Y  +P   L V G +G +
Sbjct: 62  ATALLVEKEVE-------VDSEVTVIKTDDTRLGLAEVSAAFY-DYPSRELKVVGVTGTN 113

Query: 128 SVA---SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
                   ++ I +++G     IG     +S    D++ TTP  + + K L+ +  +GVT
Sbjct: 114 GKTTNTYLIESILKKAGYKLGLIGTIKNKVSDQTFDSQRTTPEALDINKLLAQMIDKGVT 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ES 242
           HV +E SSH LD +R+  I      FTN+ +DH+D+H +   Y  AK +LF  L    E 
Sbjct: 174 HVVMEVSSHALDLNRVAKIDFDVAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEK 233

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFD 301
            AII  DD +S E ++ A++   +VL+ G +       K +       +  +     + +
Sbjct: 234 TAIINIDDPHSDEFLEAANS---KVLTYGIEKDANLKAKDITISPTGVEFGLESTIGEME 290

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G F VYN L A G  +++G+D   +   LE++  + GRFE +   ++   + VD
Sbjct: 291 LDLNITGLFNVYNTLSAIGAGLSLGVDLDEIKAGLEEIQGIAGRFEII-EEAQDFGVIVD 349

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT +SL  IL+       GRIIVVFGCGGDRD+ KRPIMG++A++L D A+VT DNPR
Sbjct: 350 YAHTPDSLRNILETAHDFVEGRIIVVFGCGGDRDKDKRPIMGQVAVELGDFAVVTSDNPR 409

Query: 422 SEDPEKIRAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           SE+P +I A+I  GI            +I   +R EAI   IE     D++ + GKGHET
Sbjct: 410 SEEPAEIIADIEVGIKEKDKIKGEDCDYIIIEDRAEAINYGIESAQPDDLVFIVGKGHET 469

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
                +       D ++ R  L  I
Sbjct: 470 YQTFKDKTIP-FDDREVARRSLAKI 493


>gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
 gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
          Length = 489

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 246/505 (48%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+ +  P        +  +     I  +  DSRH+  G +F  + G   DGH F 
Sbjct: 1   MKLQTLLSR-LP------GFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+ +GA AIV     S+      +          ++R+ +++ A   YG+    +  +
Sbjct: 54  EQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++Q+ +++G  +  IG   T I   +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTHIIEQVARKAGKKTGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  LF +L
Sbjct: 165 VDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
             +        A++  DD  S+      H     +++ G + K  +  +++         
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQY---YKHMTAAPIITYGIKEKSDVMAEQIEMTPGGMAF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L A   C+A G   A + E L  +  VPGRFE V  
Sbjct: 282 QLCTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGRFETVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +S+E  LK +R      + VV GCGGDRD+ KRP+M + A+  AD
Sbjct: 341 EGQNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKRPLMAQAAVRYAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +A+ T DNPRSEDP +I  ++  G+      ++   +R EAIR AI    + DV+++AGK
Sbjct: 401 VAVFTSDNPRSEDPRQILRDMEAGVSAGEGTYVTIPDREEAIRYAIGQAQEGDVVLIAGK 460

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHET  I+ + +     D  + R  
Sbjct: 461 GHETYQIIGD-DVIDFDDRAVARAA 484


>gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 486

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 154/503 (30%), Positives = 250/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+++DLIYK        +S+  +  R +  +  +  DSR ++ G +F+A+ G   DGH F
Sbjct: 1   MQIKDLIYK--------VSLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I   I +GA A+V      ++       ++  I+ V ++ + L + AS  Y      +  
Sbjct: 53  IADVIQKGATAVVCEELPEIES-----TADCTIIQVKDSAEALGMIASNFYDSPSSKLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++  + + ++ ++ G  +  +     I          TTP  I L K L+ 
Sbjct: 108 VGVTGTNGKTTTVTLLYRLFRKLGYKTGLLSTVENIIEDKVVQATHTTPDAISLNKLLAD 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G TH  +E SSH   Q R+ G++   G F+N+  DH+DYH+T   Y  AK   F+ 
Sbjct: 168 MVKAGCTHCFMEVSSHAAVQRRIAGLQFAGGLFSNITHDHLDYHKTFDEYIKAKKLFFDG 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L P +S A+I +DD   + ++    N   +  +           K+ +    Q + + V+
Sbjct: 228 L-PNDSFALINSDDKRGRVMI---QNTRAKTYTYSLLALADFKGKLISTTM-QGLEMDVD 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G      F L G F  YN L      + +G D   VL  L  +    GRFE   + +R  
Sbjct: 283 G--IQAWFRLIGNFNAYNLLAVYATAVLLGEDKEEVLMQLSTIEAANGRFEQQISATR-I 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            + VDYAHT ++L+ +L+ I  +    +II V GCGG+RD  KRP+M  IA   +D  ++
Sbjct: 340 TVIVDYAHTPDALKNVLETITELKGANKIITVVGCGGNRDAAKRPVMADIACQFSDHVVL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+E+P+ I  E+  G+        +   +R EAI+ A  + +  D+++VAGKGHE
Sbjct: 400 TSDNPRNEEPQAILTEMEKGVRIVDKKKVLSVLDRKEAIKVACTLASTGDIILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  G K    D  II+E+L
Sbjct: 460 TYQEIK-GVKYPFDDRLIIKELL 481


>gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes Finland 1988]
 gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes J0161]
 gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
 gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900]
 gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900]
 gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
          Length = 491

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 245/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADDA S  + K        +++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQK---ATAAHIITFGIKQEADFQASNIKITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGK
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   +V + E     D    R
Sbjct: 460 GHEDYQVVGD-EVIDFDDRVEAR 481


>gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
 gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
          Length = 495

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/496 (34%), Positives = 260/496 (52%), Gaps = 12/496 (2%)

Query: 7   IYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
             K   +LI+  L+I         +  +  DSRHIQAG  FVAI+G+  DG  FI +AI 
Sbjct: 3   TSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAIT 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  ++  +       S   R   P++ ++   K LS  A RLYG H  +++AVTGT+G
Sbjct: 63  QGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++++  + Q     G  +  +G T     S  Q    TT + + +   L  L+ QG  +
Sbjct: 123 KTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEY 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG F+NL RDH+DYH T  AY +AK+ LF E   +   A
Sbjct: 183 TAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDAYADAKLSLFTE--HETRQA 240

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDF 302
           II  DD       ++  +A    L+     +   L  V   + +  +TI V+G       
Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNAKPNAE-QALWAVQVSYAESGITIDVDGSWGAGQL 299

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL GEF   N ++A    +++G +   +L    +L  V GR E      +  ++ VDY
Sbjct: 300 RAPLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELFQAPGK-AKVVVDY 358

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD  I+TDDNPRS
Sbjct: 359 AHTPDALEKALRALRVHCQGQLWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRS 418

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP+ I  +++ G+        + NR +A+RTA+    +QD++++AGKGHE   ++ +  
Sbjct: 419 EDPQAIVNDMLAGLKTPQHASVEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAHDT 478

Query: 480 KKMSVDCDIIREILGL 495
              S D +  + +L L
Sbjct: 479 IHYS-DRESAQTLLEL 493


>gi|322384125|ref|ZP_08057843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151205|gb|EFX44514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 495

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/511 (32%), Positives = 251/511 (49%), Gaps = 39/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +     F  L+    I   +    +++ V  DSR I+ G +F+ I G   DGH F 
Sbjct: 1   MQLNE-----FASLLKTSQIVGDET--VEVSGVQIDSRKIKRGDLFICISGLVSDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            +A+  GA A+VV     +         N P ++V  TR  ++LFA+  YG   H   I+
Sbjct: 54  GKAVDNGAVALVVERRLDV---------NVPQILVKETRHAMALFAAHFYGYPAHDMKII 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++QI +  G  +  +G     I S       TT   + + K L+ +
Sbjct: 105 GVTGTNGKTTTTYLIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +  +E SSH LD  R+ GI   +G FTNL +DH+DYH+T   Y  AK +LF  +
Sbjct: 165 REKDTDYCVMEVSSHALDFGRVKGIPFRSGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRM 224

Query: 238 LPK-------ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
                      S AI+  DD  S+   +        V++ G + +  +    +       
Sbjct: 225 GNDFVQDEKQRSYAILNVDDEASETFQRL---TSAEVITYGIEKECDVRASNIRITAEGT 281

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T++      +    L G+F VYNAL A    +A GI    + + L ++  VPGR E V
Sbjct: 282 EFTLTTFEGTENIRMKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRME-V 340

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +  +   + VDYAHT + LE  L  ++    G +  VFGCGGDRD+ KRP+MGK+    
Sbjct: 341 VSEGQDYLVLVDYAHTPDGLENALSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKY 400

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +D   VT DNPR+EDP  I  +I+ GI         F    +R  AI+ AIE+ + +DV+
Sbjct: 401 SDHLFVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFELIVDRRLAIQKAIEVASPKDVV 460

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHET   + N  K    D  + +E +
Sbjct: 461 LIAGKGHETYQDIMN-VKHDFDDRLVAKEAI 490


>gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 482

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 236/479 (49%), Gaps = 25/479 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
              +I  + +DSR ++ G +FV + G   D H F              +   +       
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF---------AKQAAAQGAAAIVAERP 60

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           I  + P+++V NT + L++ A   YG+    +  + +TGT+GK++ +  + +I +  G  
Sbjct: 61  IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHK 120

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG  +  I     + + TTP  + L +  S +  QGV    +E SSH LD  R+ G 
Sbjct: 121 TGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGC 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVM 257
                 FTNL +DH+DYH+T + Y +AK  LF +L       +E  A++ +DD  ++E M
Sbjct: 181 DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYM 240

Query: 258 KRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +   +    V++ G      I  K +         T+    +  +    L G+F VYN L
Sbjct: 241 R---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVL 297

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    +  G+    ++  +++L  VPGRFE V    +   + VDYAHT +SLE +LK  
Sbjct: 298 AATAAGLVSGVKLQTIIAVIKELAGVPGRFEVVD-GGQNYTVIVDYAHTPDSLENVLKTA 356

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +    G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  I  +++ G 
Sbjct: 357 KQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGA 416

Query: 437 PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            G  +    +R EAI  AI  +   D++++AGKGHET  I+   E     D ++ +E +
Sbjct: 417 SGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII-GKEVHHFDDREVAKEAI 474


>gi|304396558|ref|ZP_07378439.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
 gi|304356067|gb|EFM20433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
          Length = 495

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/493 (32%), Positives = 244/493 (49%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L  +      R + +++ DSR   +G +FVA+ G++ DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDLLGPWVPGAPARPLRDMTLDSRIAASGDLFVAVAGHQVDGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           V  +     D         P++ +    + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  VAEAEGEAADGEIREMHGVPVIYLAQLPQRLSALAGRFYQQPGEKQTLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q     G +S  +G     +         TT S + +   L+ L+ +G +  ++E
Sbjct: 124 TQLLAQWATLLGETSAVMGTVGNGLVGHLSAAENTTGSAVDVQHLLNDLAEKGASLTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A  FTNL RDH+DYH   Q+Y +AK  LF E   +   AI+ A
Sbjct: 184 VSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQSYESAKWLLFSE--HQVGQAILNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + R  +A        L  G  G+++    V    N   +  S    + +   
Sbjct: 242 DDEVGRRWLARLPDAVAVTMENNLQPGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEINS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N ++A    +++    A ++    +L  V GR E      +   + VDYAH
Sbjct: 302 PLMGAFNVSNLMLALATLLSLDYPLATLINVAPQLQPVNGRMEVFSAAGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSED
Sbjct: 361 TPDALEKALEAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQYADVVVITDDNPRSED 420

Query: 425 PEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ G+           R +A+   I      D+++VAGKGHE   I+ N    
Sbjct: 421 PQAIVNDILTGLLDPGRARLVSGRAQAVTNTIMQAQPDDIVLVAGKGHEDYQIIGNRRLD 480

Query: 482 MSVDCDIIREILG 494
            S D   +  +LG
Sbjct: 481 YS-DRATVAALLG 492


>gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 487

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 235/476 (49%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGLKQESRLITYSQLDSAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G     +      R +AI   I      DV+V+AGKGHE    + +G+++   D
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHEDYQEI-DGKRQPFSD 471


>gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
 gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
          Length = 489

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 249/505 (49%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+    P        +        I  +  DSR + +G +F  + G   DGH F 
Sbjct: 1   MKLLTLLS-HLP------GFWVHHGGNPDIVALEMDSRRVASGSLFFCLKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+A+GA AIV     S+         + P+++V ++R+ +++ A   YG+    +  +
Sbjct: 54  EEAVARGAAAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++  S ++QI +++G  +  IG     +   +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTSIIEQIARKTGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  LF +L
Sbjct: 165 VDEGVEFVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
             +        A++  DD  S+      H     +++ G + K  +  +++         
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQY---YKHMTAAPIVTYGMREKSDVMAEQIRMTAGGMAF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L AA  C+A G     +   L  +  VPGRFE V  
Sbjct: 282 RLCTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   I VDYAHT +SLE  LK +R +    + VV GCGGDRD  KRP+M ++A+  AD
Sbjct: 341 EGQNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDPSKRPLMAQVAVRYAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +AI T DNPRSEDP++I  ++  G+       +   +R EAIR AI    + DV+++AGK
Sbjct: 401 VAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGK 460

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHET  I+ N +     D  + R  
Sbjct: 461 GHETYQIIGN-DVIEFDDRAVARAA 484


>gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes EGD-e]
 gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-561]
 gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e]
          Length = 491

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 245/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADDA S  + K        +++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQK---ATAAHIITFGIKQEADFQASNIKITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGK
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   +V + E     D    R
Sbjct: 460 GHEDYQVVGD-EVIDFDDRVEAR 481


>gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 484

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/473 (34%), Positives = 250/473 (52%), Gaps = 20/473 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           EV +DSR +  G IFVA+ G +EDG  FIP A   GA  IV       ++ +A   +   
Sbjct: 18  EVRADSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGAGVIVC--RADSEEAAAAATAGCR 75

Query: 92  ILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++   + R+ L   A         P  I+ VTGT+GK++    ++++  ++G     +G 
Sbjct: 76  VVHHADPREALWRLAQARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAGHKLGVMGT 135

Query: 150 TSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            S       +    TTP  + +   L+ ++  GV    +E SSH +DQ R+ G+     +
Sbjct: 136 VSYRWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEVSSHAIDQQRVCGVPFSGAA 195

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+  ++YF AK RLF EL   +    + ADDA+ + +++    A    L
Sbjct: 196 FTNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLELCPTA----L 251

Query: 269 SVGYQGKFIHLKK-----VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           S G Q    + +      + +      + +S+E   ++   PL G F   N L    + +
Sbjct: 252 SFGLQKGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAVAL 311

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID     + LE    V GR E V  N +G  ++VDYAHT ++LE +LK +R     R
Sbjct: 312 EMGIDPE-AFKALESFTGVSGRLERV-ENPQGLNVFVDYAHTPDALENVLKALRDAGFER 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           +I VFGCGG+RD+ KRPIMG+     +D+A++T DNPR EDPE I  +++ G+      +
Sbjct: 370 VITVFGCGGNRDRSKRPIMGEAVARWSDVAVLTSDNPRFEDPEAILKDVLPGLADAKEVV 429

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R EA   A+ ML K+D L++AGKGHE   I+  G K    D +++REIL
Sbjct: 430 VEVDRREATTRALGMLGKKDALLIAGKGHEDYQII-QGVKHHYSDQEVVREIL 481


>gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
 gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
          Length = 484

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/503 (31%), Positives = 250/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++I     E +N   I      +++I  +  DSR ++AG +FVA+ G + DGH +I
Sbjct: 1   MKLENII-----ESVNVCEI--KGNVDKEIAGIQMDSRLVEAGHLFVAVKGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI +GA AIV  +         T+  +   + V +T   +   A+  YG     +  +
Sbjct: 54  EKAIEKGASAIVCET------LPDTLNEHVTYIRVADTEDAVGKLATTFYGDPTSKLDLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKVGLLSTVCNYIDGEAIPTDHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+K   G FTN+ RDH+DYH+T + Y  AK   F+ L
Sbjct: 168 ADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + A+  ADD     ++    N   ++ +   +      K        + + + +  
Sbjct: 228 -PKTAFALTNADDKNGSVMV---QNTKAKIATYSLR-TLCEFKGKVLEDGFEGMLMDINN 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++ +      G F   N L   G    +G     VL  L  L  V GRF+ + +  +G  
Sbjct: 283 REVNV--QFIGRFNASNLLAVYGAACLLGKQPEDVLLILSTLRPVAGRFDALRSK-KGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GR+I V G GG+RD+GKRPIM + A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHEVLKGRGRVITVVGAGGNRDKGKRPIMAQEAAKQSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLTKEDMDKVLSIADRKEAIRTACMLAQAGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +++ EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLAEIF 481


>gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
 gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
          Length = 499

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 187/503 (37%), Positives = 270/503 (53%), Gaps = 13/503 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L                    +  I  +++DSR ++ G++F A+ G K DG  FI
Sbjct: 1   MRLSQLRPSRAEADPGAADQARPAGADPDIAGLTADSRAVRPGFVFAALPGVKADGRAFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILA 119
             A+A+GA A++      L   S  +    P       R   +  A+  +G + PE ++A
Sbjct: 61  ADALAKGAVAVLAPEGTELPAGSTALLLTDPQ-----PRLAFARMAAAFHGGRQPETVVA 115

Query: 120 VTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S   F  QI  R G  +                  +TTP P+ L + L+   
Sbjct: 116 VTGTNGKTSTVQFAAQIWARMGLPAGSLGTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAK 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H+++EASSHGL+Q RLDG+ + A  FTNL  DH+DYH T +AY +AK  LF+ +L
Sbjct: 176 DAGIDHLAMEASSHGLEQFRLDGVAIKAAGFTNLTLDHLDYHGTMEAYRDAKALLFQRVL 235

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P    A++ AD              G RVLS G  G  + +  V  + + Q+++++V G+
Sbjct: 236 PAGCIAVLNADSDDFHFFATICDERGQRVLSYGLAGAELRVTGVEPLAHGQRLSLTVLGR 295

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     PL G FQ +N L A GL I  G D+   L  L  L  VPGR + V T+  G  +
Sbjct: 296 DVTVDLPLAGRFQAWNVLCALGLVIGSGGDATRALATLPALEGVPGRLQHVATHPNGATV 355

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVD+AHT ++LE +L  +R+  +  ++ VFGCGGDRD+ KRP+MG +A  LAD AIVTDD
Sbjct: 356 YVDFAHTPDALETVLLALRSHAARDLVTVFGCGGDRDRTKRPVMGALAARLADRAIVTDD 415

Query: 419 NPRSEDPEKIRAEIIHGIPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           NPR+EDP  +R+E++ G  G +     E G+R EAIRTA+  L   DVLV+AGKGHE   
Sbjct: 416 NPRTEDPAFVRSEVLAGATGELAGRLEEIGDRAEAIRTAVRRLQPGDVLVIAGKGHEQGQ 475

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
            +   E +   D D  R+ +  +
Sbjct: 476 TIGT-EVRPFDDADEARKAVAEV 497


>gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
 gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
          Length = 482

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/507 (31%), Positives = 257/507 (50%), Gaps = 38/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+    P       +      + +I  V+ DSR I+AG +F+A+ G + DGH +I
Sbjct: 1   MKLSDLLKAIQP-------VQITGSTDMEITGVNIDSRLIEAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA AI+        ++   +++    + V ++   +   A+  YG       ++
Sbjct: 54  PAAIEKGAVAILCE------EWPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKAL 174
            VTGT+GK+++A+ +    +  G   +++G  ST+ ++  D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYDTFRYFG---YKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F
Sbjct: 165 GEMADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +E +PK + ++   DD      +    N   +V +   +       KV   H +  +   
Sbjct: 225 DE-MPKSAFSLTNLDDRNG---LVMTQNTRSKVYTYSLRSLSDFKGKVLESHFEGML--- 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  + +      G+F   N L   G  + +G     VL  L  LH V GRF+ +  + +
Sbjct: 278 LDFNNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPK 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D 
Sbjct: 337 GYTAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDR 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR E+P+ I  +++ G     I   I   +R EAI+TA  +    DV++VAGK
Sbjct: 397 VIITADNPRFEEPQDIINDMLAGLDKDDIQKTISIADRREAIKTACMLAQPGDVILVAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           GHE    +  G K    D + ++ I+ 
Sbjct: 457 GHENYQEIK-GVKHHFDDKEELKAIMN 482


>gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
 gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
          Length = 483

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  ++ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI++GA AI+        D           + V ++   +   A+  YG     +  +
Sbjct: 54  PAAISKGATAILCE------DMPEKPVEGITYIQVKDSEDAVGKIATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 ADEGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 228 -PKNAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V +   G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSK-DGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + ++ +L 
Sbjct: 460 NYQEIK-GVKHHFDDKEEVKRMLN 482


>gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
 gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
          Length = 491

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/503 (31%), Positives = 244/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T   Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 223

Query: 237 LLPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADDA S   ++        V++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKMAVLNADDAES---VRMQTATAAHVITFGIKQQADFKASNIQITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             ++    +F     + G F VYN L A     A+ I     +  LE +  V GRFE V 
Sbjct: 281 FDLTTPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVN 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQAFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGK
Sbjct: 400 SNPIFTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQLIGD-EVIDFDDRVEAR 481


>gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii NCTC 11218]
          Length = 495

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/496 (34%), Positives = 260/496 (52%), Gaps = 12/496 (2%)

Query: 7   IYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
             K   +LI+  L+I         +  +  DSRHIQAG  FVAI+G+  DG  FI +AI 
Sbjct: 3   TSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAIT 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  ++  +       S   R   P++ ++   K LS  A RLYG H  +++AVTGT+G
Sbjct: 63  QGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++++  + Q     G  +  +G T     S  Q    TT + + +   L  L+ QG  +
Sbjct: 123 KTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEY 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG F+NL RDH+DYH T  AY +AK+ LF E   +   A
Sbjct: 183 TAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDAYADAKLSLFTE--HETRQA 240

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDF 302
           II  DD       ++  +A    L+     +   L  V   + +  +TI V+G       
Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNAKPNAE-QALWAVQVSYAESGITIDVDGSWGAGQL 299

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL GEF   N ++A    +++G +   +L    +L  V GR E      +  ++ VDY
Sbjct: 300 RAPLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELFQAPGK-AKVVVDY 358

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD  I+TDDNPRS
Sbjct: 359 AHTPDALEKALRALRVHCQGQLWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRS 418

Query: 423 EDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP+ I  +++ G+        + NR +A+RTA+    +QD++++AGKGHE   ++ +  
Sbjct: 419 EDPQAIVNDMLAGLKAPQHANVEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAHDT 478

Query: 480 KKMSVDCDIIREILGL 495
              S D +  + +L L
Sbjct: 479 IHYS-DRESAQTLLEL 493


>gi|90418199|ref|ZP_01226111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337871|gb|EAS51522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 482

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 214/494 (43%), Positives = 300/494 (60%), Gaps = 18/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L                    +  I  +  DSR   AG++F A+ G++ DG  F+
Sbjct: 1   MKLSKLAEDL---------ATGQTTSDPDIAGLCVDSRETGAGFLFAALAGSRADGAGFV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A+GA AI+           A I +  P+L   + R+ ++L A+R +G  PE+++A+
Sbjct: 52  ADAEARGAAAILAGEG-------AEIATTLPVLRAADPRRAIALMAARFHGAQPEHVVAI 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S+A+F +QI  R GL++  +G T  +S S  +   LTTP PI L + ++ L+ 
Sbjct: 105 TGTAGKTSIATFTRQIWARCGLAAASVGTTGVVSPSRDEYGSLTTPDPIALMRLMAELAG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHG+DQ RLDG++L A +F+NLG DH+DYH   ++YF AKMRLF  LLP
Sbjct: 165 EGVTHAAMEASSHGIDQRRLDGVRLAAAAFSNLGHDHLDYHPDIESYFAAKMRLFTTLLP 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S   +  A + G +V++VG  G F+ LK++     +Q   I  EG+ 
Sbjct: 225 KGAPAVIFADDRWSGRAIDVATSVGAKVMTVGRGGNFLTLKRLELERQRQIAEIEAEGRI 284

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + PL GEFQ+ NALVAAGL IA G+ +A  L  LE L    GR +  GT + G  ++
Sbjct: 285 HRVVLPLAGEFQMANALVAAGLAIATGVATADALAALEHLKGAAGRLDLAGTTADGAPVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L  +R  T+GR++VV GCGGDRD+ KRP+MG+IA  LADI IVTDDN
Sbjct: 345 VDYAHKPEALENVLAAVRPFTTGRVVVVIGCGGDRDRAKRPMMGEIAARLADIVIVTDDN 404

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+    G  E G+R  AIR A+      D +V+AGKGHE    V  G 
Sbjct: 405 PRSEEPAAIRAEIMTAANGAREIGDRRAAIREAVASARTGDTVVIAGKGHEVGQTVA-GI 463

Query: 480 KKMSVDCDIIREIL 493
                D + +R  L
Sbjct: 464 THHFSDHEEVRAAL 477


>gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
 gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
          Length = 489

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/496 (31%), Positives = 247/496 (49%), Gaps = 18/496 (3%)

Query: 11  FPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            P  + QL +   +Q  E  + ++  D+R +Q G +F+A+ G+  DG +F+ QA  +GA 
Sbjct: 1   MPLALKQLMAGLNIQAPEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAA 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           AI+    +   D       + P + V    + +S  A   Y    + +  + VTGT+GKS
Sbjct: 61  AIL----FDNSDGFVPSELSIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +    +  G     +G     +         TT S I + + L+   ++ V   +
Sbjct: 117 TCTQLIANWTELFGQRGGVLGTLGNGLFGQLHATENTTGSAISIQQELARFVAEKVDVAA 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL QHR+  ++  A  FTNL RDH+DYH T QAY  AK  +F++  P+    I+
Sbjct: 177 MEVSSHGLVQHRVSALQFAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPEC--CIL 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ADDA ++E + +   A    +      + G F++   V        ++I     D    
Sbjct: 235 NADDATAREWLLQMPQAVVYGIDQQLPEHPGPFVYATDVKYHPQGITISIHSSWGDGVLS 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G+F V N L A  + + +  D   + +   +L  V GR E  G N     + VDYA
Sbjct: 295 APLLGKFNVSNLLAALAVMLVLQYDFETLCQTASRLQPVTGRMECFG-NQDQPLVVVDYA 353

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE  L+  R    G +  +FGCGGDRD+GKRP M  IA   AD  I+TDDNPR+E
Sbjct: 354 HTPDGLEKALQAARQHCHGHLFCLFGCGGDRDRGKRPQMAAIAEQWADTLILTDDNPRTE 413

Query: 424 DPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I A++  G+    +   + +R +AI+ A+      D++++AGKGHE   I+   EK
Sbjct: 414 DPAAIIADMCAGLQKPEQAHIEHSRPKAIQLALAQAVPGDIILLAGKGHEDYQIIGK-EK 472

Query: 481 KMSVDCDIIREILGLI 496
               D + + ++LG++
Sbjct: 473 HHYSDRETVMQLLGVM 488


>gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/503 (33%), Positives = 258/503 (51%), Gaps = 24/503 (4%)

Query: 1   MKLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L +L+    D PEL            +  +  +  DSR ++ G  FVAIVG+  DG  
Sbjct: 5   MNLTNLLAPWLDCPELA-----------DITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +I +AI QGA A++  S           + N  I+ ++   + LS  A RLY     +++
Sbjct: 54  YIEKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++   + Q  + +G  +  +G T     +  Q    TT + + + K L+ L
Sbjct: 114 GVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADL 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +AY  AKM LF E 
Sbjct: 174 QQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE- 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   AII  DD    +  +         L          L      + +  +TI  +G
Sbjct: 233 -HQCQHAIINLDDEVGAQWFQELQQGVGVSL-FPQDASVKALWASSVAYAESGITIEFDG 290

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                    PL GEF   N L+A    +A+G+D   +L+    L  V GR E    NS+ 
Sbjct: 291 CFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSK- 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  LAD  ++
Sbjct: 350 AKVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVL 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AGKGHE  
Sbjct: 410 TDDNPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDY 469

Query: 473 HIVTNGEKKMSVDCDIIREILGL 495
            ++ +     S D +  +++LG+
Sbjct: 470 QVLKHQTVHYS-DRESAQQLLGI 491


>gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
 gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
          Length = 487

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/485 (32%), Positives = 240/485 (49%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IF    R+  I E++ DSR+++AG +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY +   +    ++ P++ V    K LS  A R YG+     N++ VTGT+GK+SV   
Sbjct: 60  -AYEVDGATVLPITDVPLIPVKGLAKQLSDIAGRFYGEPSRHLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q    TTP+PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDLLGQHCGIVGTLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T +AY  AK +LF          ++  DD 
Sbjct: 179 HGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFA--WNDLKCRVVNLDDE 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + + +  +   +     S+     +++ ++        + T+     +      L G F 
Sbjct: 237 FGRHLAAQDSESRLISYSLQDSSAYLYCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L  L KL    GR + +G   +   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAIGALLGLDYALDEILNVLPKLEGPAGRMQRLGGGEQ-PLVVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ +R    G+++ +FGCGGDRD+GKRP+M +I   LAD  +VTDDNPR+EDP +I  +
Sbjct: 356 VLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRTEDPGQIFDD 415

Query: 432 IIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G     +      R  AI   I   +  DV+V+AGKGHE    + NGE+    D   
Sbjct: 416 IRAGFKDASKAAFVAGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGERHAFSDLVE 474

Query: 489 IREIL 493
               L
Sbjct: 475 ADHAL 479


>gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria monocytogenes L99]
          Length = 491

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/503 (31%), Positives = 244/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T   Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 223

Query: 237 LLPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADDA S   ++        V++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKMAVLNADDAES---VRMQTATAAHVITFGIKQQADFKASNIQITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             ++    +F     + G F VYN L A     A+ I     +  LE +  V GRFE V 
Sbjct: 281 FDLTTPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVN 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D +
Sbjct: 341 A-GQAFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYS 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGK
Sbjct: 400 SNPIFTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   ++ + E     D    R
Sbjct: 460 GHEDYQLIGD-EVIDFDDRVEAR 481


>gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 492

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/489 (31%), Positives = 232/489 (47%), Gaps = 16/489 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +  I P+         + SDSR I+ G IFVA  G   DG  +IP A+A GA  +   
Sbjct: 8   LAETGIPPLPCANAAGRLLHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                  F+       P   + + +    + A+++YG   +   +  VTGT+GK+S+  +
Sbjct: 68  DDG---KFAWNPEWKVPNQGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQW 124

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  IG          ++   TTP+P+ +   L     QG T  ++E SS
Sbjct: 125 LAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSS 184

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF         A+I  DD 
Sbjct: 185 HGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YWHGLQHAVINVDDE 242

Query: 252 YSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           Y  E++ R         V S G+ +   I +    A  +  +        +      L G
Sbjct: 243 YGAELVGRLKKDCPDLVVYSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F   N      L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++
Sbjct: 303 RFNAQNLAACIALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDA 361

Query: 369 LEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+
Sbjct: 362 LEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQ 421

Query: 427 KIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            I  +I+  +P     + +R  AIR A+E     D++++AGKGHE    V  G K    D
Sbjct: 422 DIINDILPAVPNPERVEADRAAAIRYAVERAAANDIILIAGKGHENYQDV-QGVKHHFSD 480

Query: 486 CDIIREILG 494
            ++  + L 
Sbjct: 481 FEVAEKALA 489


>gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
 gi|166224776|sp|A4IM04|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
          Length = 489

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 245/505 (48%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+ +  P        +  +     I  +  DSRH+  G +F  + G   DGH F 
Sbjct: 1   MKLQTLLSR-LP------GFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+ +GA AIV     S+      +          ++R+ +++ A   YG+    +  +
Sbjct: 54  EQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++Q+ +++G     IG   T I   +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTHIIEQVARKAGKKIGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  LF +L
Sbjct: 165 VDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
             +        A++  DD  S+      H     +++ G + K  +  +++         
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQY---YKHMTAAPIITYGIKEKSDVMAEQIEMTPGGMAF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L A   C+A G   A + E L  +  VPGRFE V  
Sbjct: 282 QLCTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGRFETVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +S+E  LK +R      + VV GCGGDRD+ KRP+M + A+  AD
Sbjct: 341 EGQNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKRPLMAQAAVRYAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +A+ T DNPRSEDP +I  ++  G+      ++   +R EAIR AI    + DV+++AGK
Sbjct: 401 VAVFTSDNPRSEDPRQILRDMEAGVSAGDGTYVTIPDREEAIRYAIGQAQEGDVVLIAGK 460

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHET  I+ + +     D  + R  
Sbjct: 461 GHETYQIIGD-DVIDFDDRAVARAA 484


>gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH
           391-98]
          Length = 491

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/504 (29%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR +  G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V +T + L++ A   Y +    +  +
Sbjct: 53  --------AEQAAAQGAAAIVAERPIDVDVPVVLVKDTFRSLAVLADYFYEQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I       + TTP  + L +A   +
Sbjct: 105 GITGTNGKTTTSHIIDEIMRAHGHKTGLIGTINMKIGDETFAVKNTTPDALTLQQAFHRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + V    +E SSH LD+ R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEENVNSAVMEVSSHALDRGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
                  +E  A++  DDA ++  ++   +    V++ G      +  K +         
Sbjct: 225 GNSYHHNREKYAVLNNDDAATEAYIR---STAATVVTYGIDTHSDVMAKDIVMTSGGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+    +       L G+F VYNAL A    +  G+    +++ LE L  V GRFE V  
Sbjct: 282 TLVTPHESKKITMKLIGKFNVYNALAATAAGLVSGVSLQTIIDVLEHLTGVAGRFEVVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A + A 
Sbjct: 341 GGQDYTVIVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            AI+T DNPRSEDP+ I  +++ G+ G  +    +R +AI  AI     +DV+++AGKGH
Sbjct: 401 HAILTSDNPRSEDPQAILDDMLTGVKGNNYEVIVDRKKAIFHAISEAQAEDVIIIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+   E     D ++ +E +
Sbjct: 461 ETYQIIGK-EVHHFDDREVAKEAI 483


>gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum WCFS1]
 gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus plantarum WCFS1]
          Length = 550

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/499 (32%), Positives = 248/499 (49%), Gaps = 29/499 (5%)

Query: 12  PELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA
Sbjct: 61  SQLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGA 120

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK
Sbjct: 121 KIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGK 171

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++V   ++QI +    ++  IG     I         TTP  I   + L+ +   GV  V
Sbjct: 172 TTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETV 231

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----- 240
           ++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K     
Sbjct: 232 AMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADG 291

Query: 241 -ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGK 298
               A++  DD   +E  +        VL+ G +   + + + V    +  +  +SV G 
Sbjct: 292 TNKVAVLNTDDPVGREFEQYTA---AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGH 348

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G+F VYN L A     A GI    +++ LEK+  V GRF+ V +++ G  +
Sbjct: 349 VTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHT-GVSV 407

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ +   I T D
Sbjct: 408 IVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSD 467

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGHE   I+ 
Sbjct: 468 NPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGHEDYQIIG 527

Query: 477 NGEKKMSVDCDIIREILGL 495
              K    D +   + L L
Sbjct: 528 R-TKHHFDDSEEAAKALAL 545


>gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
 gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
          Length = 491

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/506 (32%), Positives = 263/506 (51%), Gaps = 29/506 (5%)

Query: 1   MKLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L ++   ++F +L++++         R+  E+ SDSR +  G IFVA+ G   DG  F
Sbjct: 1   MALGEVTVNREFEQLLDKVR--------REGGEIRSDSREVGKGDIFVAVPGVNADGARF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENI 117
           IP A+  GA  IV     +  + +        ++  D+ R+ L   A      G  P  +
Sbjct: 53  IPPAVEAGASTIVCLPGGAEAEAARAAG--CTVVHHDDPREALWRLAEARWHTGSLPLRV 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSY 176
           L VTGT+GK++ A  ++ +   +G     +G  S       +    TTP P+ +   L+ 
Sbjct: 111 LGVTGTNGKTTSAYLLEHLFTATGHKVGVLGTVSYRWPGHCEAAPLTTPDPLRVHAMLAA 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  GV    +E SSH L+Q R+ G+     SF+NL +DH+D+HQ  ++YF AK RLF E
Sbjct: 171 MAQAGVDIAVMEVSSHALEQQRVCGVPFAGASFSNLTQDHLDFHQDMESYFRAKSRLFLE 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-----VCAIHNKQQV 291
           L   +    I  DD + + +++       R LS G Q      +      + A  +   +
Sbjct: 231 LPRADKVMAINGDDPWGRRLLE----LCPRALSFGLQKALPQQRHLWGELLSAGTDGCHL 286

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++G+ ++   PL G F   N L    L + +G+    +  HLE  H V GR E V  
Sbjct: 287 RMHLDGQQWELRSPLVGAFNASNLLSVQALALELGLMPDDL-RHLEGFHGVCGRLERVP- 344

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N+R   ++VDYAHT ++L  +LK +R     RI+ VFGCGG+RD+ KRPIMG+     +D
Sbjct: 345 NARKLHVFVDYAHTPDALVNVLKALRGAGFKRIVTVFGCGGNRDRTKRPIMGEAVARYSD 404

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +A++T DNPR EDPE I  +++ G+      + + +R +A   A+EML   D L++AGKG
Sbjct: 405 VAVLTSDNPRFEDPEAILKDVLPGLREDREVVVEVDRRKATAKAVEMLGPDDALLIAGKG 464

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE   I+  G K    D +++RE+LG
Sbjct: 465 HEDYQII-QGTKHHYSDQEVVRELLG 489


>gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
 gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
          Length = 493

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/503 (33%), Positives = 258/503 (51%), Gaps = 24/503 (4%)

Query: 1   MKLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L +L+    D PEL            +  +  +  DSR ++ G  FVAIVG+  DG  
Sbjct: 5   MNLTNLLAPWLDCPELA-----------DITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +I +AI QGA A++  S           + N  I+ ++   + LS  A RLY     +++
Sbjct: 54  YIEKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++   + Q  + +G  +  +G T     +  Q    TT + + + K L+ L
Sbjct: 114 GVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADL 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +AY  AKM LF E 
Sbjct: 174 QQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE- 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   AII  DD    +  +         L          L      + +  +TI  +G
Sbjct: 233 -HQCQHAIINLDDEVGAQWFQELQQGVGVSL-FPQDASVKALWASSVAYAESGITIEFDG 290

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                    PL GEF   N L+A    +A+G+D   +L+    L  V GR E    NS+ 
Sbjct: 291 CFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSK- 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  LAD  ++
Sbjct: 350 AKVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVL 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AGKGHE  
Sbjct: 410 TDDNPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDY 469

Query: 473 HIVTNGEKKMSVDCDIIREILGL 495
            ++ +     S D +  +++LG+
Sbjct: 470 QVLKHQTVHYS-DRESAQQLLGI 491


>gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           chlorochromatii CaD3]
 gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 516

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/513 (32%), Positives = 249/513 (48%), Gaps = 29/513 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
            L  L    F   +  + +         E  I  VSSDSR +  G +FVA+ G   DGH 
Sbjct: 12  NLPSLTVGAFITALQAVEVTEQAGACHMEHCITAVSSDSRDMIEGALFVAVRGFCTDGHR 71

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           FI  AI +GA  IV        +   +I      L V + RK L+  A+  YG   + + 
Sbjct: 72  FIESAIERGACIIVCE------ELPQSITHGCLYLRVIDARKALAHVAALFYGNPAKQLR 125

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175
            + VTGT+GK++ +  + ++     + S  IG     I         TTP    L    +
Sbjct: 126 FIGVTGTNGKTTTSRIITEMLTAFAVPSGYIGTNLCRIGKRDIPLERTTPEAHELHALFA 185

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G   V +E SSH L   R+ G++  A  FTNL +DH+D+H T QAY  AK  LF+
Sbjct: 186 LMVEAGCKAVVMEVSSHALLLQRVYGLRFDAALFTNLTQDHLDFHHTMQAYAEAKQLLFD 245

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAI 285
           +L P +  AI+  DDAY+  +++R   +     ++             G+    +   A 
Sbjct: 246 QLQP-DGVAIVNTDDAYAPLMLQRVAPSQRVCCTLQANVPSVLQCPQYGQDFQAEVRHAS 304

Query: 286 HNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               ++ +    G+       L G + V N L AA     +G+  A +   L  +H V G
Sbjct: 305 LAATEMELRFPKGETELLTVGLAGSYNVMNVLQAAATGYCLGLQPAAICRALAAVHSVDG 364

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIM 402
           R E VG  +   +I+VDYAHT ++L+  L+ ++ +     R++V+FGCGG+RD+ KRPIM
Sbjct: 365 RMERVGRPNLPYQIFVDYAHTPDALQKALETLKALKGEEARLMVLFGCGGNRDRLKRPIM 424

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQD 460
           G IA  LAD+ I+T DNPR E P+ I  EI  G+ G       +R EAIRTAI  L   D
Sbjct: 425 GSIAASLADVVILTSDNPRDESPDAILDEIEQGMQGAAHQRIADRAEAIRTAISQLQAGD 484

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           VL++AGKGHE    V  G++    D + +   L
Sbjct: 485 VLLIAGKGHERYQEVA-GKRTYFSDQEEVGRCL 516


>gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
 gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/505 (31%), Positives = 249/505 (49%), Gaps = 38/505 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       I  +   E +I  V+ DSR +QAG +F+A+ G + DGH +I
Sbjct: 1   MILSELLKAIQP-------IQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA A++        D     +     + V ++ + +   A+  Y        ++
Sbjct: 54  PAAIEKGAVAVLCE------DVPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKAL 174
            VTGT+GK+++A+ +    +  G     +G  ST+ ++  D       TTP PI L + L
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYK---VGLISTVCNYIDDQAIPTEHTTPDPITLNQLL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++  G  +V +E SSH + Q R+ G++   G FTNL RDH+DYH+T + Y  AK + F
Sbjct: 165 GQMADSGCKYVFMEVSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++ +PK + ++   DD      +    N   +V +   +       K+   H +  +   
Sbjct: 225 DD-MPKGAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGKILESHFEGML--- 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  + +      G F   N L   G  + +G     VL  L  L  V GRF+ V  + +
Sbjct: 278 LDFNNHELAVHFIGRFNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAV-RSPK 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  +L  I  +    G+II V G GG+RD+GKRPIM K A   +D 
Sbjct: 337 GITAIVDYAHTPDALINVLNAIHGVLEGKGKIITVVGAGGNRDKGKRPIMAKEAAKASDR 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I+T DNPR E+P+ I  +++ G     +   I   +R EAI+TA  +    DV++VAGK
Sbjct: 397 VIITSDNPRFEEPQDIINDMLAGLDKDDMQKTISIADRREAIKTACMLAQPGDVILVAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHE    V  G K    D + ++ I
Sbjct: 457 GHENYQEVK-GVKHHFDDKEELKAI 480


>gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID18]
 gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
          Length = 492

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 233/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   + P L+   +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNIPPLLCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDGR---FAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 481

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/488 (33%), Positives = 255/488 (52%), Gaps = 23/488 (4%)

Query: 11  FPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             EL+  L   I      E +   +  DSR I+ G IFVA+ G+  DGH +I QAI  GA
Sbjct: 1   MEELLLGLDYEILQKGKTEIEFKGMEYDSRKIKDGDIFVALEGSISDGHKYIKQAIENGA 60

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + ++VS     +            ++V + RK L   AS  YG   + +  + +TGT+GK
Sbjct: 61  KGVLVSKKVEPEFPVE-------YILVKDLRKNLGKIASNFYGYPQKKLKIIGITGTNGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ I  +      +IG     I     +   TTP  + + K       +G+ ++
Sbjct: 114 TTSTYLLESILGK--EKVARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKKAVEKGLEYL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L   R+D ++    SFTNL  DH+DYH+    YF AK +LF  +L     + 
Sbjct: 172 VMEVSSHALSLGRVDMLEFDVASFTNLTLDHLDYHENMDNYFQAKRKLFT-MLKDSKKSS 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DD Y   + K        +     +   +  + V    + Q V +++ G+ F+    
Sbjct: 231 INIDDIYGDRLYKEFGGYSYSL----TKSADLTGEIVEFHSDGQFVRLNLMGEMFEEKLA 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G + +YN L   G+ + +GI   ++LE L+ +   PGRFE V    +   + VDYAHT
Sbjct: 287 ILGRYNLYNVLGVIGIALQLGIGKNIILEKLKDIKGAPGRFELVNC-GQDYIVVVDYAHT 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE ILK+I  +  GR+I VFGCGGDRD  KRPIMG+IA  L+DIAI+T DNPR+E+P
Sbjct: 346 GDALENILKSINELKKGRVITVFGCGGDRDATKRPIMGEIAQRLSDIAILTSDNPRTENP 405

Query: 426 EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             I  ++  G+ G  ++ + +R +AI  AIE+  K D++++AGKGHET  I+   +K   
Sbjct: 406 HLIIEDVKKGMNGDHYLVEEDREQAIVKAIEIAQKNDIILIAGKGHETYQILGR-KKIHF 464

Query: 484 VDCDIIRE 491
            D +I R 
Sbjct: 465 DDREIARR 472


>gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 492

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/495 (31%), Positives = 247/495 (49%), Gaps = 28/495 (5%)

Query: 13  ELINQLSI--FPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           ELI  L    F + + +  +I +V+ D+R ++ G +FV I+G+  +GH    +A+ +GA 
Sbjct: 5   ELIKPLKSKKFSIDFSDSLEITKVTQDTREVEPGSLFVCIIGSLHNGHELAKEAVQKGAV 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            +V S    ++          P++ V+NT K +++ A+  Y    +N+  + VTGT+GK+
Sbjct: 65  LVVASEPLDVE---------VPVVYVNNTMKAMAILAAAFYDYPSQNLRVIGVTGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +V   +  I       +  IG     I +   + + TTP  + L K L  +   GV   S
Sbjct: 116 TVTHLLDYIFHDHKEKTGVIGTMYRRIGAEVYETKNTTPDSLTLQKTLREMQENGVQTCS 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-----KE 241
           +E SSH L Q R+ G       FTNL +DH++YH T + Y  AK  LF +L       K 
Sbjct: 176 MEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQDKP 235

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AI+  DD   +   ++   +   V S G  Q        +   +   +  ++ E + +
Sbjct: 236 KFAILNFDDPVGRSFEEKTAAS---VFSYGIDQSADFKATDLRITNKGTRFNLNFEDQVY 292

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G+F V NAL A     A G++   V++ L ++  V GRFE V        + V
Sbjct: 293 EVQLQLVGKFNVSNALAAIAGAYAAGLELPSVIQSLSQISGVRGRFEIVKGEYD-FAVIV 351

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + L  +L  +  I +G +  V GCGGDRD+ KRPIM +IA   +D  I T DNP
Sbjct: 352 DYAHTPDGLLNVLNAVNEIKTGNVFCVVGCGGDRDRTKRPIMAEIAQKNSDTVIFTSDNP 411

Query: 421 RSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           R+EDP  I  E++ G+    +    +R EAI++AI+     D++++AGKGHE   I+   
Sbjct: 412 RTEDPNAILNEVVAGLEEESYQLIPDRREAIQSAIKQAAPNDIVLIAGKGHENYQIIGT- 470

Query: 479 EKKMSVDCDIIREIL 493
           EK    D +   + +
Sbjct: 471 EKIHFDDVEEAEKAI 485


>gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
 gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
          Length = 471

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 162/474 (34%), Positives = 234/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A+V  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + +  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRDLNQHLSNLAGQFYQQPGAALRLVGVTGTNGKTTTTQLLAQWAQMLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVEQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINADDDVGRRWLGQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G+ G ++   +V    N   +              L G F V N LVA    +++
Sbjct: 239 ENVPAGWNGPWLSATQVQYHDNGASIVFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAELLASAPNLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHAQAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI      DV+++AGKGHE   +V N     S D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYS-DRVTVARLLGVV 470


>gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
          Length = 501

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 199/475 (41%), Positives = 273/475 (57%), Gaps = 9/475 (1%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           I      +  +  +S+DSR I  G +FVAI G   DG  FI  A+A+GA A+++  A   
Sbjct: 23  ILSAGAGDEPVFGLSADSRRINPGDLFVAIPGTHADGSRFIADAVARGASAVLMEPAAPR 82

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                 +     +    + R  LSL A+R Y + P  I AVTGT+GK+SVA F++QI +R
Sbjct: 83  PVLPPHVALAFSL----DVRHSLSLAAARFYPRQPATIAAVTGTAGKTSVAFFLRQIWER 138

Query: 140 SGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G  +  +G    ++   +    LTTP P+ L   L  L+ +GVTH+++EASSHGLDQ R
Sbjct: 139 LGHKAAYLGTIGLVAPDGSTYGSLTTPDPVELHATLDRLAGEGVTHMALEASSHGLDQKR 198

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LDG+   AG FTNLGRDH+DYH T  AYF AK+RLF +++P ++ A+      ++   + 
Sbjct: 199 LDGVHFTAGGFTNLGRDHLDYHPTIDAYFRAKLRLFTQVMPDDATAVAVTGAPFAANALA 258

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L +G +G+   L       +     +           PL G FQ+ NAL+A
Sbjct: 259 WAETRGLKLLPIG-EGQATGLDIFGTTGSGTGQKVMFADGSHAI-VPLVGRFQLDNALLA 316

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AGL IA G +    LE L  L  VPGR E +G + R   ++VDYAH   +L  +L  +R 
Sbjct: 317 AGLAIACGAERPAALEALAYLTGVPGRLERIGDDPRRP-VFVDYAHKPEALATVLDTLRA 375

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              GR++VVFGCGGDRD+GKRP+MG IA   AD+ IVTDDNPRSEDP  IRAEI+ G  G
Sbjct: 376 AVPGRLMVVFGCGGDRDKGKRPLMGAIAASKADVVIVTDDNPRSEDPAAIRAEILEGAHG 435

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             E G+R EAI+ A+ +L   D L+VAGKGHET  I+ +       D   +R  L
Sbjct: 436 AREIGDRAEAIKAAVALLQPGDALIVAGKGHETGQIIGD-RTYPFSDAAEVRAAL 489


>gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
          Length = 512

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/495 (33%), Positives = 248/495 (50%), Gaps = 27/495 (5%)

Query: 9   KDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L + L     +  R+  I  +  DSR +Q G +FV I G   DGH FIPQA+A G
Sbjct: 15  KTIGQLADLLTDAVVIGNRDTVITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAAG 74

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A AIV +           +     +L V   +  L       +        ++ +TGT+G
Sbjct: 75  ASAIVTTRE------DVEVPEGIAVLRVKELQPALDTIVPYFHDYPARKMRVVGITGTNG 128

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +   + I +++G     IG     I         TTP  + L   L+ +  +G+ +
Sbjct: 129 KTTTSYITRAILRKAGYKVGLIGTIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDY 188

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPK 240
           V +E SSH LDQ+R+ GI+     FTNL +DH+DYH+T + Y  AK +LF+ +      +
Sbjct: 189 VVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQ 248

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG-K 298
              A++  DDA    ++  A    C+ L+   +    +    +    N  +  +  E   
Sbjct: 249 GKTAVVNIDDAVGATMLAHAK---CKHLTYAIEKEADLRATDILVHANGAEFVLHHESFG 305

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +      + G F VYN + A G  +A  ID+A++ E LE    VPGRFE V    +   I
Sbjct: 306 EMPLKLHITGIFNVYNVMSAVGAALAEHIDAAVIKETLEAFTAVPGRFELVKA-GQDFSI 364

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + +E +LK  R I   RII VFGCGGDRD+ KRPIMG++A +LAD+ I T D
Sbjct: 365 IVDYAHTPDGVENVLKTARKIAKKRIIAVFGCGGDRDRTKRPIMGRLAAELADVVIATSD 424

Query: 419 NPRSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           NPR+EDPE I +++  G+   I         +R  AI  AIEM  K D++V+ GKGHE  
Sbjct: 425 NPRTEDPEFILSQVEEGVDEAIGTKHHELIVDRRHAIYRAIEMAEKDDIVVILGKGHENY 484

Query: 473 HIVTNGEKKMSVDCD 487
            I+ +       D +
Sbjct: 485 QILKDKTIH-FDDKE 498


>gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
 gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
          Length = 471

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/474 (34%), Positives = 237/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A++  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIAEADGVAPDASVVEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINADDEVGRRWLGQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G+ G ++    V    N   +       +      L G F V N LVA    +++
Sbjct: 239 GQVPTGWNGPWLSANNVHYHDNGASIAFDSSWGEGKLESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLATAPNLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHALAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    ++DV++VAGKGHE   +V N     S D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKEEDVVLVAGKGHEDYQLVGNRRLDYS-DRVTVARLLGVM 470


>gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 487

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 235/476 (49%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGLKQESRLITYSQLDGAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G     +      R +AI   I      DV+V+AGKGHE    + +G+++   D
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHEDYQEI-DGKRQPFSD 471


>gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
          Length = 492

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 234/502 (46%), Gaps = 25/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   + P L+   +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNIPPLLCANAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGTIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E++ R       +   GY   +   I +    A  +  +     
Sbjct: 230 HGLKHAIINVDDEYGAELIGRLKKDCPDLAVYGYGFSEHADIRIVHFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGATAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR ++E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYSVERAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +  G K    D ++  + L 
Sbjct: 469 QDM-QGVKHHFSDFEVAEKALA 489


>gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
 gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
          Length = 491

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/489 (30%), Positives = 230/489 (47%), Gaps = 14/489 (2%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F + + +L I           +V +DSR +  G IFVAI G   DGH FI +A A GA+ 
Sbjct: 5   FEKTLGELFISRHGLEGHTRGQVRNDSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQV 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           IV     +              + V ++ +  +           E   ++ VTGT+GK++
Sbjct: 65  IVHERELT------DYLEKPTYIRVTDSSRAYARLVREFCDCPDEYVKLIGVTGTNGKTT 118

Query: 129 VASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+ I + +G     I                TTP    L   L+ +   G+   ++
Sbjct: 119 TAFLVEHIFRNAGEPCGLISTVEYRDGKITAPATHTTPEAGILFPLLATMRRNGMRAAAM 178

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L Q R++G +     FTNL  DH+DYH   + Y+ AK   F  LL  +  A+I 
Sbjct: 179 ELSSHALQQGRINGARFRTAIFTNLTGDHLDYHGDMEHYYQAKKLFFTRLLGLDGTAVIN 238

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + K + +           +        +  V       +  ++ E + FD    L 
Sbjct: 239 IDDEFGKRLARDISGRQQVTFGM-TPAADWVISDVELGAEGSKFRLTGEEQAFDVATNLI 297

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   ++N   A    +  G+    +   L +   VPGR E    +  G   YVDYAHT +
Sbjct: 298 GTHNIHNLTGAILAALDYGLKPEAISHALNRPIRVPGRLEPFRASPEGPVFYVDYAHTDD 357

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L+ +L+ +R IT G++I VFG GGDRD+ KRP MGK A   AD  I+T DNPRSE+P+K
Sbjct: 358 ALKNVLEILRKITKGKLIAVFGAGGDRDRSKRPRMGKAAAQYADHLILTSDNPRSEEPQK 417

Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  EI  GIP    F  + +R +A+R A+ +    DV+++AGKGHE    +  G ++   
Sbjct: 418 IIDEIAAGIPAGTSFETEPDRAQALRRAVAVARPGDVVLIAGKGHENYQEI-QGVRRSLD 476

Query: 485 DCDIIREIL 493
           D  +I+ ++
Sbjct: 477 DRKLIKTLI 485


>gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 511

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 210/487 (43%), Positives = 282/487 (57%), Gaps = 13/487 (2%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D I     EL +       +  E ++  V+SDSR + +G +F A+ G   DG  +I QAI
Sbjct: 23  DWINMKLRELFSDDVAIAAEASEIEVRGVASDSRAVLSGEVFFALAGANTDGARYIDQAI 82

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA A+V           A +R       V N R+ L+L A+R++ + P  I AVTGTS
Sbjct: 83  ANGAVAVVGEQFPDSDHRVALVR-------VANPRRALALAAARMFPRQPATIAAVTGTS 135

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+SVA+F +QI QR G ++  IG    ++   +    LTTP PI L + +  ++ +GVT
Sbjct: 136 GKTSVAAFTRQIWQRLGFAAASIGTIGLVTPQRSVYGSLTTPDPIALHREIDQIAGEGVT 195

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+++EASSHGLDQ RLDG+++ A  FTNL RDH+DYH     Y  AK+RLF +L+     
Sbjct: 196 HLALEASSHGLDQFRLDGVRVSAAGFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVIDGGA 255

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDF 300
           A+I AD  +S+ V+  A   G R+++VG  G     I L         Q++T+   G++ 
Sbjct: 256 AVISADHEHSEAVIAAARARGLRLITVGRNGNRQDGIRLIGATIDGFAQRLTVEFRGRER 315

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL GEFQ+ NALVAAGL I  G D+  V   L+ L    GR E VG +  G  I+V
Sbjct: 316 GLRLPLVGEFQIENALVAAGLAIGTGGDAEQVFAALQHLEGAKGRLELVG-DRNGAPIFV 374

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH  ++L   L+ +R     ++IVVFG GGDRD GKRP+MG IA  LAD  IVTDDNP
Sbjct: 375 DYAHKPDALAKALQALRPYAKRKLIVVFGAGGDRDAGKRPLMGAIATGLADSVIVTDDNP 434

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           RSEDP  IRA I+    G +E G+R EAIRTAI  L   D L++AGKGHET  I+  G  
Sbjct: 435 RSEDPAAIRAAIMAAAGGAVEIGDRAEAIRTAIGALQSGDALLIAGKGHETGQII-GGRV 493

Query: 481 KMSVDCD 487
               D +
Sbjct: 494 LPFSDHE 500


>gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
 gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
          Length = 493

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/503 (33%), Positives = 258/503 (51%), Gaps = 24/503 (4%)

Query: 1   MKLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L +L+    D PEL            +  +  +  DSR ++ G  FVAIVG+  DG  
Sbjct: 5   MNLTNLLAPWLDCPELA-----------DITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +I +AI QGA A++  S           + N  I+ ++   + LS  A RLY     +++
Sbjct: 54  YIEKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++   + Q  + +G  +  +G T     +  Q    TT + + + K L+ L
Sbjct: 114 GVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADL 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +AY  AKM LF E 
Sbjct: 174 QQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE- 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   AII  DD    +  +         L          L      + +  +TI  +G
Sbjct: 233 -HQCQHAIINLDDEVGAQWFQELQQGVGVSL-FPQDASVKALWASSVAYAESGITIEFDG 290

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                    PL GEF   N L+A    +A+G+D   +L+    L  V GR E    NS+ 
Sbjct: 291 CFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSK- 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  LAD  ++
Sbjct: 350 AKVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVL 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AGKGHE  
Sbjct: 410 TDDNPRSEDPTMIVQDMLAGLTRADSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDY 469

Query: 473 HIVTNGEKKMSVDCDIIREILGL 495
            ++ +     S D +  +++LG+
Sbjct: 470 QVLKHQTVHYS-DRESAQQLLGI 491


>gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 487

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/476 (33%), Positives = 235/476 (49%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +  AL+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G            R +AI   I      DV+V+AGKGHE    + +G+++   D
Sbjct: 417 RPGFVTADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHEDYQEI-DGKRQPFSD 471


>gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           ST-640]
 gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           020-06]
          Length = 492

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/489 (31%), Positives = 231/489 (47%), Gaps = 16/489 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +  I P+         + SDSR I+ G IFVA  G   DG  +IP A+A GA  +   
Sbjct: 8   LAETGIPPLPCANAAGRLLHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                  F+       P   + + +    + A+++YG   +   +  VTGT+GK+S+  +
Sbjct: 68  DDG---KFAWNPEWKVPNQGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQW 124

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  IG          ++   TTP+P+ +   L     QG T  ++E SS
Sbjct: 125 LAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSS 184

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF         A+I  DD 
Sbjct: 185 HGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YWHGLQHAVINVDDG 242

Query: 252 YSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           Y  E++ R         V S G+ +   I +    A  +           +      L G
Sbjct: 243 YGAELIGRLKKDCPDLAVYSYGFSEQADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F   N      L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++
Sbjct: 303 RFNAQNLSACIALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDA 361

Query: 369 LEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+
Sbjct: 362 LEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQ 421

Query: 427 KIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            I  +I+  +P     + +R  AIR A+E     D++++AGKGHE    V  G K    D
Sbjct: 422 DIINDILPAVPNPERVEADRAAAIRYAVERAAANDIILIAGKGHENYQDV-QGVKHHFSD 480

Query: 486 CDIIREILG 494
            ++  + L 
Sbjct: 481 FEVAEKALA 489


>gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
 gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
          Length = 493

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 162/486 (33%), Positives = 243/486 (50%), Gaps = 8/486 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   + I   ++ +  I+ +  DSR I  G  FVAI G+  DG  FI  AI +GA A++ 
Sbjct: 11  LAPWVDISAHEFHDMAISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAINRGANAVIA 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            S         +  S  P++ +D   + LS  ASRLY      ++ VTGT+GK+++   +
Sbjct: 71  QSCERHPQGVCSTESRVPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTNGKTTITQII 130

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G  +  +G          Q    TT S I + + L  + SQG    ++E SSH
Sbjct: 131 AQWLNLVGKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGADFTAMEISSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +   AG FTNL RDH+DYH T + Y  AK  LF E   +   AII  DD  
Sbjct: 191 GLVQGRVKTLPFAAGVFTNLSRDHLDYHGTMEEYELAKRSLFTE--HQCGKAIINVDDQV 248

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +  ++  +A    L        +   +V    +   +  S    D  F  PL GEF  
Sbjct: 249 GAKWAEQLPDAIQVSLQPLSSTNAVFASQVDYSESGISLAFSGRFGDGQFSVPLIGEFNA 308

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N LVA    +A+GID   ++E  ++L  V GR E      +  ++ VDYAHT ++LE  
Sbjct: 309 NNVLVAFTTLLALGIDKQQLIETAKQLTPVIGRMELFHNEGK-AKVVVDYAHTPDALEKA 367

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +R    G++  +FGCGGDRD GKRP+M +I   LAD  ++ DDNPRSE P  I  ++
Sbjct: 368 LMALRVHCHGKLWAIFGCGGDRDTGKRPMMAEIGERLADHVVLADDNPRSESPSAIVDDM 427

Query: 433 IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G+      I + +R +A++ A+      D++++AGKGHE   ++ N     S D +  
Sbjct: 428 LAGMRNPERAIVEHDRFKALQYALANSEVHDIILLAGKGHEDYQVLANETVHYS-DRESA 486

Query: 490 REILGL 495
           +++L L
Sbjct: 487 QQLLEL 492


>gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
          Length = 492

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/489 (31%), Positives = 232/489 (47%), Gaps = 16/489 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +  I P+         + SDSR I+ G IFVA  G   DG  +IP A+A GA  +   
Sbjct: 8   LAETGIPPLPCANAAGRLLHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                  F+       P   + + +    + A+++YG   +   +  VTGT+GK+S+  +
Sbjct: 68  DDG---KFAWNPEWKVPNQGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQW 124

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  IG          ++   TTP+P+ +   L     QG T  ++E SS
Sbjct: 125 LAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSS 184

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF         A+I  DD 
Sbjct: 185 HGLDQSRVNGVSFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YWHDLQHAVINVDDE 242

Query: 252 YSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           Y  E++ R         V S G+ +   I +    A  +  +        +      L G
Sbjct: 243 YGAELVGRLKKDCPDLVVYSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F   N      L  A G     VL+ LEK+    GR + +  NS    + VDYAHT ++
Sbjct: 303 RFNAQNLAACIALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDA 361

Query: 369 LEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+
Sbjct: 362 LEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQ 421

Query: 427 KIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            I  +I+  +P     + +R  AIR A+E     D++++AGKGHE    V  G K    D
Sbjct: 422 DIINDILPAVPNPERVEADRAAAIRYAVERAAASDIILIAGKGHENYQDV-QGVKHHFSD 480

Query: 486 CDIIREILG 494
            ++  + L 
Sbjct: 481 FEVAEKALA 489


>gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-003]
          Length = 491

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 245/503 (48%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGAPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADDA S  + K        +++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQK---ATAAHIITFGIKQEADFQASNIKITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGK
Sbjct: 400 TNPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGK 459

Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490
           GHE   +V + E     D    R
Sbjct: 460 GHEDYQVVGD-EVIDFDDRVEAR 481


>gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
 gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
          Length = 493

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/471 (33%), Positives = 248/471 (52%), Gaps = 9/471 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q+G  FVAI+G+  DG  FIP AI QGA A++  +       +  I  +
Sbjct: 25  VSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEIVDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A  LY     +++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  VPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        Q+   TT + + + K LS L+ Q   + ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF E   +   A+I  DD       K+ +NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTE--HQCGHAVINVDDVVGAAWAKQLNNALAVSL 262

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +  + ++   +    +   +    +  +     PL GEF   N ++A    +++G 
Sbjct: 263 KPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTLLSLGF 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +L    +L  V GR E    +    ++ VDYAHT ++LE  L+ +R    G +  +
Sbjct: 323 SKQDLLATAGQLQPVLGRMELFQADDN-AKVVVDYAHTPDALEKALQALRVHCHGELWAI 381

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE+P  I  +++ G+      I + +
Sbjct: 382 FGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEEPALIMKDMLAGLTKPAEAIVQHD 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           R +A+  A+E  + QD++++AGKGHE   I+ +G    S D +    +LGL
Sbjct: 442 RFKALSYALEHASSQDIILLAGKGHEDYQILNSGTIHYS-DRESAMTLLGL 491


>gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
 gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
          Length = 487

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 235/476 (49%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G     +      R +AI   I      DV+V+AGKGHE    + +G+++   D
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHEDYQEI-DGKRQPFSD 471


>gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
 gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
          Length = 532

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/514 (30%), Positives = 250/514 (48%), Gaps = 40/514 (7%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      +  I+ +  DSR + +G +FV  +G   DGH F+PQA  QG
Sbjct: 3   LTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A  IV +    + +          +++V +T   LS  A   YG+  E++  + +TGT+G
Sbjct: 63  AVVIVATKEVEIGESVKA------VVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ +  ++ I +  GL +  IG  S        QD   TTP  +YL K ++ +      
Sbjct: 117 KTTTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTE 176

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKES 242
              +E SSH L Q R   I      FTNL RDH+DYH+ + +Y  AK +LF  ++ P   
Sbjct: 177 VCVMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARH 236

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             ++  DD  +   +    N    V++ G +    +H   +     +  V +     + +
Sbjct: 237 RKVVNIDDPNAGYFVS-LGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIE 295

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   VYN L A  + IA+      ++  +E++  VPGR E V    +   + VD
Sbjct: 296 ISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELVDEE-QPFAVIVD 354

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +L  +R     RII V GCGGDRD+GKRP+M KIA   +++ I T DNPR
Sbjct: 355 YAHTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIFTSDNPR 414

Query: 422 SEDPEKIRAEIIHGI----PGFIEKGN------------------RIEAIRTAIEMLNKQ 459
           SEDP +I  +++ G+      +++ G                   R  A+R A+ M  + 
Sbjct: 415 SEDPLEILDDMLAGVGWSMDEYLKCGERSYYPPIWNGNRVFVYDLRKIAVRAAVAMGEEG 474

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D +V+AGKGHE   I+   E+K   D +  RE L
Sbjct: 475 DAVVIAGKGHEKYQIIGK-ERKYHDDREECREAL 507


>gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 550

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 161/499 (32%), Positives = 248/499 (49%), Gaps = 29/499 (5%)

Query: 12  PELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA
Sbjct: 61  SQLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGA 120

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK
Sbjct: 121 KIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGK 171

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++V   ++QI +    ++  IG     I         TTP  I   + L+ +   GV  V
Sbjct: 172 TTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETV 231

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----- 240
           ++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K     
Sbjct: 232 AMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADG 291

Query: 241 -ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGK 298
               A++  DD   +E  +        VL+ G +   + + + V    +  +  +SV G 
Sbjct: 292 TNKVAVLNTDDPVGREFEQYTA---AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGH 348

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G+F VYN L A     A GI    +++ LEK+  V GRF+ V +++ G  +
Sbjct: 349 VTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHT-GVSV 407

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ +   I T D
Sbjct: 408 IVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSD 467

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGHE   I+ 
Sbjct: 468 NPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGHEDYQIIG 527

Query: 477 NGEKKMSVDCDIIREILGL 495
              K    D +   + L L
Sbjct: 528 R-TKHHFDDSEEAAKALAL 545


>gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae NCCP11945]
 gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Neisseria gonorrhoeae NCCP11945]
 gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
          Length = 492

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   + P L+   +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNIPPLLCANAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+  GA  +          F+       P   + N +    + A+++Y    +   +  
Sbjct: 55  AAVVNGAAFVFWDDDG---KFAWNPEWKVPNQGIKNLKHRAGMLAAQVYDNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|261823021|ref|YP_003261127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607034|gb|ACX89520.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium wasabiae
           WPP163]
          Length = 495

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/495 (34%), Positives = 252/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     E  + E++ DSR   AG +FVAIVG+K DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVQDTPELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           V  +     D +       P++ + N  + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  VAEAEGETADGTVREMHGVPVIYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +   A     TT S + + + LS L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +   A  FTNL RDH+DYH   ++Y  AK  LF E   +    II A
Sbjct: 184 VSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWALFAE--HRVGQMIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD      + +  +A    ++     G +G+++   ++    N   +         +   
Sbjct: 242 DDEVGLRWLAKLPDAVAVTMANNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +++G     ++    +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALEAARLHCLGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVTDILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLIAGKGHEDYQLVGNQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 481 YS-DRITVARLLGVI 494


>gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
 gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
          Length = 502

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/495 (31%), Positives = 258/495 (52%), Gaps = 31/495 (6%)

Query: 10  DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +L++ + +   +    + I  +  DSR +QA  +FVA+ G + DGH +I QA+A GA
Sbjct: 3   NLKQLLHHIEVIQTRGNAPESIENIHFDSRKVQANDLFVAVKGTQADGHQYIGQAVALGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + +V  +      F   +  +   + V N+ K L   AS  Y    + +  + +TGT+GK
Sbjct: 63  KVVVCET------FPKNLSDSATYIQVANSAKALGWLASNYYDHPSKKLKLVGITGTNGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGV 182
           ++  + + Q+ ++ G   +++G  STI ++  D     RLTTP P+ L + ++ +   G 
Sbjct: 117 TTTVTLLHQLFRKFG---YRVGLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMVKAGC 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           TH  +E SSH + Q R+ G+     +FTN+  DH+D+H+T   Y NAK + F++L P  +
Sbjct: 174 THCFMEVSSHAVVQERIAGLHFTGAAFTNISHDHLDFHETFANYINAKKQFFDQL-PPTA 232

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I ADD     +++       R  ++     F   + V +      + I     D + 
Sbjct: 233 FALINADDKRGMVMLQNTVAKTQRTFALKQFADFK-ARVVESSLQGLFMEID----DVEV 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            F + G F  YN L    + + +G D+   L  L  L  VPGRFE +   S G    VDY
Sbjct: 288 WFQMIGYFNAYNLLGIYAIAVLLGEDTTETLTLLSGLQSVPGRFEKIIGES-GATGVVDY 346

Query: 363 AHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           +HT ++LE +L+ I  +     +II V GCGG+RD  KRPIM +IA   +D+ I T DNP
Sbjct: 347 SHTPDALENVLQTIFELRQSGQKIITVVGCGGNRDASKRPIMAQIACQYSDVVIFTSDNP 406

Query: 421 RSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R+E P +I  ++  G+     P      +R +AIR A E+  KQD+++VAGKGHET   +
Sbjct: 407 RNEPPMQILEDMQEGVSIDDEPKTSLIASRKDAIRKACELAQKQDIILVAGKGHETYQEI 466

Query: 476 TNGEKKMSVDCDIIR 490
             G +    D  +++
Sbjct: 467 A-GVRHPFDDRLVLK 480


>gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
 gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
          Length = 485

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 245/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++Y       N   I      + +I +++ DSR +  G +FVA+ G + DGH +I
Sbjct: 1   MLLSDILY-------NISLITVSGKTDIEIEQITFDSRQVNKGTLFVAVPGTQSDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI  GA A++             +      + V+N+ K + + A   YG   +   ++
Sbjct: 54  ETAIDAGASAVLCE------VLPKMLEEEVTYIQVENSAKSMGIAAGNFYGNPSKRLTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SVA+ + ++ ++ G     I      I         TTP  I L   L  +
Sbjct: 108 GVTGTNGKTSVATLLFKLFRKLGYKCGLISTVQNQIEDEIIPATHTTPDSITLNALLHEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SSH + Q R+ G+    G FTN+ +DH+D+H+T   Y  AK   F+ L
Sbjct: 168 HQKGCAFVFMEVSSHSVVQGRISGLHFSGGIFTNITQDHLDFHKTFDEYIKAKKGFFDAL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+   DD   K VM +   A     S+     F      C +       + +E 
Sbjct: 228 -PSTAFALTNVDDRNGK-VMLQNTKAEKHSYSLKNIADFKGKVLDCGL-----FGLQMEI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +  F L G+F  YN L   G  + +  +   +L  L +L   PGRFE V ++ +   
Sbjct: 281 DKQEVWFKLIGQFNAYNLLAVYGAAVLLEENPENILTELSQLTPPPGRFEQVISSQQTVG 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           I  DYAHT ++L+ +L+ I  +  G   +I V GCGG+RD+GKRP+M  IA +L+D  I+
Sbjct: 341 IV-DYAHTPDALKNVLETINGLRQGHERVITVVGCGGNRDKGKRPLMAGIACELSDTVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+PE I  ++  GIP           +R EAIR A+ +   +D+++VAGKGHE
Sbjct: 400 TSDNPRFEEPEDILKDMEAGIPITKQKRVQVIVDRREAIRQAVALAGPEDIILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   V  G K    D + ++   
Sbjct: 460 TYQDVK-GVKSHFDDREELKLAF 481


>gi|238752427|ref|ZP_04613904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
 gi|238709360|gb|EEQ01601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
          Length = 471

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 238/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+V  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +     +++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSTLAGQFYHQPGAALSLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH    +Y  AK  LF     +    II ADDA  +  + +   A      
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFS--THQAEHKIINADDAVGRRWLSQLPQAVAVSME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +  G+QG ++  ++V    N   +       +      L G F V N LVA    +A+
Sbjct: 239 GNIPTGWQGPWLSTREVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L     L  V GR E      +   + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLTQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442
            VFGCGGDRD+GKR +MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRSLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGRAQAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    + DV+++AGKGHE   +V N     S D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYS-DRVTVARLLGVM 470


>gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
 gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
          Length = 493

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/471 (33%), Positives = 248/471 (52%), Gaps = 9/471 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q+G  FVAI+G+  DG  FIP AI QGA A++  +       +  I  +
Sbjct: 25  VSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQQGANAVIAQACEQKAHGTIEIVDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A  LY     +++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  VPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        Q+   TT + + + K LS L+ Q   + ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF E   +   A+I  DD       K+ +NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTE--HQCGHAVINVDDVVGAAWAKQLNNALAVSL 262

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +  + ++   +    +   +    +  +     PL GEF   N ++A    +++G 
Sbjct: 263 KPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTLLSLGF 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +L    +L  V GR E    +    ++ VDYAHT ++LE  L+ +R    G +  +
Sbjct: 323 SKQDLLATAGQLQPVLGRMELFQADDN-AKVVVDYAHTPDALEKALQALRVHCQGELWAI 381

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I  +++ G+      I + +
Sbjct: 382 FGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKDMLVGLTKPAEAIVQHD 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           R +A+  A+E  + QD++++AGKGHE   I+ +G    S D +    +LGL
Sbjct: 442 RFKALSYALEHASSQDIILLAGKGHEDYQILNSGTIHYS-DRESAMTLLGL 491


>gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA6140]
          Length = 492

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLSPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDGR---FAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola sp. JR]
 gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR]
          Length = 495

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/507 (31%), Positives = 243/507 (47%), Gaps = 34/507 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL+        N            +I  ++ DSR +Q G+ F+ I G K DGHLF  
Sbjct: 3   RLTDLLK-------NIYGAQVQGDLTVQIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQ 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
            A+  GA  I+     ++      +         ++TR+ L+   +  Y    + +  + 
Sbjct: 56  NAVENGATVIIAEKPVTVPSSVTVVTV-------EDTREALAYMGAAFYDYPGDKLNIIG 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++ I  ++G     IG     I         TTP  + L   L+ + 
Sbjct: 109 VTGTNGKTTTTHLIENILVKAGKKVGLIGTIKNKIIDRVLPVTNTTPESLDLQALLAEMV 168

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GV +  +E SSH L+ +R+ G +     FTN+ +DH+D+H+T   Y  AK +LF  L 
Sbjct: 169 DAGVDYAVMEVSSHALELNRVAGCEYDQAIFTNITQDHLDFHETMDNYLAAKQKLFINLG 228

Query: 239 P-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVT 292
                 +    II  DD+  +  ++  H    +V++ G Q    +  +K+    +    T
Sbjct: 229 KNSRKSRNKYGIINIDDSKGQSFLEVTHG---QVITYGIQSAADVRAEKIDLRSDGVSFT 285

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    L G F VYN+L A    +   I   ++ E LE++  VPGR E V   
Sbjct: 286 AVTPRGSVDLKLNLTGLFNVYNSLAAVASGLGENIALPVIKEALEEVKGVPGRMEKV-EA 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT + LE +L   R  T GR+I VFGCGGDRD+ KRPIMG+++  L+D 
Sbjct: 345 GQPFAVLVDYAHTPDGLENVLSAAREFTKGRLITVFGCGGDRDRTKRPIMGEVSAKLSDF 404

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            ++T DNPRSE P +I  +I  G+        +    +R EAIR A+ M    DV+V+AG
Sbjct: 405 TVLTSDNPRSESPAEILRDIEEGVKPIIGPEKYTVIEDRKEAIRHALNMARAGDVVVIAG 464

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHET  IV         D ++  EIL
Sbjct: 465 KGHETYQIVGTKVLP-FDDREVAMEIL 490


>gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 523

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 155/500 (31%), Positives = 247/500 (49%), Gaps = 24/500 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L+ K+F +L+           + +I+ ++ DSR +  G +F A+ G K DG+ F+ 
Sbjct: 31  KLSSLLGKEFEKLLKG-------QPDPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVD 83

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           +AI++GA A++ S A   +       +    L VDN R  L+  +   Y    +++  + 
Sbjct: 84  EAISRGAVAVISSQARRFR------SAKVAYLTVDNPRLVLAAVSRAFYDHPDKDLSLVG 137

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT+GK++VA  V+QI    G     +G     +      +  TTP    L   LS + 
Sbjct: 138 ITGTNGKTTVAYLVKQILANLGQRYGCLGTVGYDLVRRTVPSFRTTPESHDLCGLLSQMR 197

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-EL 237
                   +E SSHG+DQ R+ G+    G+F NL RDH+DYHQ  ++Y+  K R F  E 
Sbjct: 198 DFECRGAVMEVSSHGIDQFRVSGLGFEVGAFLNLTRDHLDYHQDMESYYAVKRRFFNGES 257

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
            P    A++  DD Y K ++         +L+ G  +G      ++       +   +  
Sbjct: 258 GPLPKVAVVNIDDPYGKRLVSEIPEQVA-ILTFGETEGAAFRASEIELSSEGSEFRFTTP 316

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             DF     L G++ V N L A  +C  +G++    +E L+    +PGR + V    +  
Sbjct: 317 LGDFAVKTSLVGDYNVSNTLAALTICSGLGLNIENCIEDLDSFPGIPGRMQKV-EAGQAA 375

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++L+  L  ++ +T G++ VVFGCGG+RD+GKRP M K+A  LAD A  T
Sbjct: 376 TVLVDYAHTEDALQNALSMLQGVTVGKLRVVFGCGGNRDRGKRPAMTKVANTLADEAWAT 435

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E  E I A++  G+          +R  AI  A+E  +  D L++AGKGHE+  
Sbjct: 436 SDNPRNEQVEDIFADMKEGLVDPERVHFVPDRRRAIELALEASHAGDCLLIAGKGHESFQ 495

Query: 474 IVTNGEKKMSVDCDIIREIL 493
                      D  +  E++
Sbjct: 496 EYGETVVP-FDDRKVAIELI 514


>gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi ATCC BAA-1116]
 gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116]
          Length = 493

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/471 (33%), Positives = 246/471 (52%), Gaps = 9/471 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+  DSR +Q+G  FVAI+G+  DG  FIP AI QGA A++  +       +  I  +
Sbjct: 25  VSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEIVDD 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +D   K LS  A  LY     +++ VTGT+GK+++   + Q     G  +  +G 
Sbjct: 85  VPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAVMGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T        Q+   TT + + + K LS L+ Q   + ++E SSHGL Q R+  +   AG 
Sbjct: 145 TGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALSFAAGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH T + Y NAK+ LF E   +   A+I  DD       K+ +NA    L
Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTE--HQCGHAVINVDDVVGAAWAKQLNNALAVSL 262

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +  + ++   +    +   +    +  +     PL GEF   N ++A    +++G 
Sbjct: 263 KPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTLLSLGF 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +L    +L  V GR E    N    ++ VDYAHT ++LE  L+ +R    G +  +
Sbjct: 323 SKQDLLATAGQLQPVLGRMELFQANDN-AKVVVDYAHTPDALEKALQALRVHCHGELWAI 381

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
            GCGGDRD GKRP+M +IA  L D  ++TDDNPRSEDP  I   ++ G+      I + +
Sbjct: 382 LGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKGMLAGLTKPAEAIVQHD 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           R +A+  A+E  + QD++++AGKGHE   I+ +G    S D +    +LGL
Sbjct: 442 RFKALSYALEHASSQDIILLAGKGHEDYQILNSGTIHYS-DRESAMTLLGL 491


>gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
 gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
          Length = 489

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/505 (32%), Positives = 248/505 (49%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+    P        +        I  +  DSR +  G +F  + G   DGH F 
Sbjct: 1   MKLLTLLS-HLP------GFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+A+ A AIV     S+         + P+++V ++R+ +++ A   YG+    +  +
Sbjct: 54  EEAVARKAAAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++  S ++QI +++G  +  IG     +   +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NAK  LF +L
Sbjct: 165 VDEGVEFVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
             +        A++  DD  S+      H     +++ G + K  +  +++         
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQY---YKHMTAAPIVTYGMREKSDVMAEQIRITAGGMAF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G F VYN L AA  C+A G     +   L  +  VPGRFE V  
Sbjct: 282 RLCTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETVD- 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   I VDYAHT +SLE  LK +R +    + VV GCGGDRD+ KRP+M ++A+  AD
Sbjct: 341 EGQNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRYAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +AI T DNPRSEDP++I  ++  G+       +   +R EAIR AI    + DV+++AGK
Sbjct: 401 VAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGK 460

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHET  I+ N +     D  + R  
Sbjct: 461 GHETYQIIGN-DVIEFDDRAVARAA 484


>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
          Length = 968

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/503 (32%), Positives = 253/503 (50%), Gaps = 24/503 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +  K   EL   +    ++     KI ++  DSR +  G +FVAI G   DGH FI QA+
Sbjct: 1   MAMKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAV 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
            +GA AI+      + + +A       +L V N    L +     +      +  + +TG
Sbjct: 61  EKGACAILTEREIEIPEGAAA------VLRVPNLAAALEVIVPFFHDYPSRKMRIIGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++ +   + I + +G     IG     +   A     TTP  + L + L+Y++ +G
Sbjct: 115 TNGKTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRG 174

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK- 240
           +  V +E SSH LDQ+R+ GI+     FTNL +DH+DYH+T + Y  AK RLF+ +  K 
Sbjct: 175 MDFVVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKG 234

Query: 241 ---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++  DDA  + ++  AH     +     +   +  + +       ++T++   
Sbjct: 235 AKEGKTAVVNDDDAAGETML--AHAKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAF 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    + G F VYN + A G  +A  I    +   LE    VPGRFE V    +   
Sbjct: 293 GRMDLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDA-GQAFS 351

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VDYAHT + LE IL   R I +GRI+ VFGCGGDRD+ KRPIMG+IA  L+D+ +VT 
Sbjct: 352 IIVDYAHTPDGLENILNTAREIAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTS 411

Query: 418 DNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR+EDP +I  E+  G+          +  +R  AI  A+ +  K D++++AGKGHE 
Sbjct: 412 DNPRTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHEN 471

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ +       D ++ RE + 
Sbjct: 472 YQILKDKTIH-FDDKEVAREAVA 493



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 159/450 (35%), Gaps = 30/450 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   +++ +D+R I AG +FVA+ G + DG  F  QA+ +GA  ++V    ++    A
Sbjct: 520 AADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEA 575

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +     +L   +T       A+    K    ++A+TG++GK++       +        
Sbjct: 576 KLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKDLTAAVL------- 628

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G    +   A +       P+ L   L   ++     V +     G           
Sbjct: 629 ---GACLLVQKTAANYNNEIGLPLTL---LGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 682

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++   + +    AK  L E + P     I+ ADDA    + ++A  AG
Sbjct: 683 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEP-GGTVILNADDARVLAMREKAK-AG 740

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALVA 318
            RV++ G      +    V       +  +  +      +  +   P+PG   V NAL A
Sbjct: 741 VRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 800

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
                 +G+  A V   L        +  F            D Y  +  S    LK + 
Sbjct: 801 IAAARVLGLSLADVRRGLA--VPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTLA 858

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GI 436
            + +GR I V G   +     +     +  + A +        R E+   I       G+
Sbjct: 859 EMFAGRKIAVLGDMLELGSASKSGHASVGEEAAHLG-FAAVLSRGEESRFIAEAAKAGGV 917

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           P      +   A     E+L   D ++  G
Sbjct: 918 PLVERMTSHEAAAARLKEILQPGDAVLFKG 947


>gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 161/499 (32%), Positives = 248/499 (49%), Gaps = 29/499 (5%)

Query: 12  PELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA
Sbjct: 4   SQLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK
Sbjct: 64  KIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++V   ++QI +    ++  IG     I         TTP  I   + L+ +   GV  V
Sbjct: 115 TTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----- 240
           ++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K     
Sbjct: 175 AMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADG 234

Query: 241 -ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGK 298
               A++  DD   +E  +        VL+ G +   + + + V    +  +  +SV G 
Sbjct: 235 TNKVAVLNTDDPVGREFEQYTA---AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGH 291

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G+F VYN L A     A GI    +++ LEK+  V GRF+ V +++ G  +
Sbjct: 292 VTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHT-GVSV 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ +   I T D
Sbjct: 351 IVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSD 410

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGHE   I+ 
Sbjct: 411 NPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGHEDYQIIG 470

Query: 477 NGEKKMSVDCDIIREILGL 495
              K    D +   + L L
Sbjct: 471 R-TKHHFDDSEEAAKALAL 488


>gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 494

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/502 (31%), Positives = 241/502 (48%), Gaps = 24/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L +        + +Q++    +   +  I     DSR +  G I++ I G   DGH F
Sbjct: 1   MRLPE-KNNTLQSISDQIAGATSRGNLQVGITGAKMDSRKVIPGDIYICIPGFHADGHDF 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
                        V +  +       +  + P + V N R+     A+ ++G   + +  
Sbjct: 60  ---------AEAAVKAGAAALAVERYLPLDVPQIKVRNIRQTAGKIAAAVFGYPSQKLEL 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V   ++ I Q +G  +  IG   + I +     + TTP    +   L+ 
Sbjct: 111 IGVTGTNGKTTVTHLIESIAQENGKKTGLIGTLGSRIGNRGIPGQHTTPESAEIQDLLNQ 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV    +E SSH LD  R+ G +     FTNL +DH+DYHQ+ + Y  AK  LF +
Sbjct: 171 MVEEGVNTAVMEVSSHALDLGRIVGCRFDTAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQ 230

Query: 237 LLPK--ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
           +  +     AI+ ADD  S+ +M       CRV++ G + K     +K+          +
Sbjct: 231 MSGEKPGQKAILNADDQASEYLM---TKTSCRVVTYGIEKKADYQAEKIVLSDKGIYFDL 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +       F  PG+F VYN L A    +  G +S  V + L  L  VPGRF+ +    
Sbjct: 288 VYKKIREKVFFATPGKFSVYNVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSI-RKG 346

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + +DYAHT + LE +L   R IT  R+I VFGCGGDRD+GKRP+M + A   +D  
Sbjct: 347 QPFLVIIDYAHTPDGLENVLSTAREITGRRLITVFGCGGDRDRGKRPLMAEAASGWSDYV 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           IVT DNPR+EDPEKI  +I+ G+    +    +R  AI  A  M  + D +++AGKGHE 
Sbjct: 407 IVTSDNPRTEDPEKIIGDILPGMGKVDYEVIVDRRRAIHRACTMAGEGDTVLIAGKGHED 466

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+    K    D +     L
Sbjct: 467 YQIIGT-SKIHFDDKEEASAAL 487


>gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
 gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
          Length = 494

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 175/495 (35%), Positives = 255/495 (51%), Gaps = 13/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   AG +FVA+VG+K DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDVLAPWVTDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +  +  D + T     P++ ++N  + LS  A R Y +      ++ VTGT+GK++ 
Sbjct: 64  VAQADEATPDGTLTEMHGVPVIYLENLNQRLSALAGRFYRQPSASLQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +      +  TT S + + + LS L  QG    ++E
Sbjct: 124 TQLLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR++ +   A  FTNL RDH+DYH     Y  AK RLF E   +    II A
Sbjct: 184 VSSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLFAE--HQVGQKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFP 305
           DD   +  ++R  +A    ++     G+   LK     ++    T+  +      +    
Sbjct: 242 DDEVGRRWLQRLPDAVAVSVAGEIDAGRAHWLKATHIDYHDSGFTVQFDSSWGAGEINSR 301

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F V N L+A    +++G     +++    L  V GR E    + R   + VDYAHT
Sbjct: 302 LMGAFNVSNLLLALATLLSLGYSLEQLVKTGSALQPVCGRMEVFLASGR-PTVVVDYAHT 360

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L   R    G +  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSEDP
Sbjct: 361 PDALEKALAAARLHCRGVLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDP 420

Query: 426 EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I A+I+ G+           R EA+ +A+      DV++VAGKGHE   +V N     
Sbjct: 421 QAIVADILSGLLDAGRVQAIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERLDY 480

Query: 483 SVDCDIIREILGLIL 497
           S D   +  +LG+I+
Sbjct: 481 S-DRITVARLLGVIV 494


>gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 550

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 161/499 (32%), Positives = 248/499 (49%), Gaps = 29/499 (5%)

Query: 12  PELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA
Sbjct: 61  SQLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGA 120

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK
Sbjct: 121 KIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGK 171

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++V   ++QI +    ++  IG     I         TTP  I   + L+ +   GV  V
Sbjct: 172 TTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETV 231

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----- 240
           ++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K     
Sbjct: 232 AMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADG 291

Query: 241 -ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGK 298
               A++  DD   +E  +        VL+ G +   + + + V    +  +  +SV G 
Sbjct: 292 TNKVAVLNTDDPVGREFEQYTA---AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGH 348

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G+F VYN L A     A GI    +++ LEK+  V GRF+ V +++ G  +
Sbjct: 349 VTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHT-GVSV 407

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ +   I T D
Sbjct: 408 IVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSD 467

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGHE   I+ 
Sbjct: 468 NPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGHEDYQIIG 527

Query: 477 NGEKKMSVDCDIIREILGL 495
              K    D +   + L L
Sbjct: 528 R-TKHHFDDSEEAAKALAL 545


>gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 491

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 243/502 (48%), Gaps = 33/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + ++  +     +I++++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLS--------ELMEAIPVYTGEASSAIEIDQIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A   GA AI+            T+    P++ V ++++ +++ A   YG   +   +
Sbjct: 53  AKRAEELGAVAIIAEK---------TVDVTVPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRN 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF +
Sbjct: 164 MLMNGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           L           A+I  DDA S   M+ A  A      +  Q  F     +    +    
Sbjct: 224 LGNSYHTSNPKVAVINIDDAESSR-MQTATAAHVITFGIKKQADF-RASNIKIASHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     +  +E +  V GRFE V +
Sbjct: 282 DLRTPVGNFTLKIKMIGNFSVYNVLAAIATSFALKIPINNAIATVEDIPGVKGRFELV-S 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDY+HT +SL  +L+ I      R+ V+ GCGGDRD+GKRP M KIA+D A 
Sbjct: 341 AGQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVIVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKG
Sbjct: 401 NPIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENRRDAIRFAVNEAETGDVILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIR 490
           HE   I+ + E     D    R
Sbjct: 461 HEDYQIIGD-EVIDFDDRVEAR 481


>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
          Length = 966

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/500 (32%), Positives = 252/500 (50%), Gaps = 24/500 (4%)

Query: 9   KDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL   +    ++     KI ++  DSR +  G +FVAI G   DGH FI QA+ +G
Sbjct: 2   KTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A AI+      + + +A       +L V N    L +     +      +  + +TGT+G
Sbjct: 62  ACAILTEREIEIPEGAAA------VLRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +   + I + +G     IG     +   A     TTP  + L + L+Y++ +G+  
Sbjct: 116 KTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDF 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK---- 240
           V +E SSH LDQ+R+ GI+     FTNL +DH+DYH+T + Y  AK RLF+ +  K    
Sbjct: 176 VVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKE 235

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++  DDA  + ++  AH     +     +   +  + +       ++T++      
Sbjct: 236 GKTAVVNDDDAAGETML--AHAKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAFGRM 293

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    + G F VYN + A G  +A  I    +   LE    VPGRFE V    +   I V
Sbjct: 294 DLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDA-GQAFSIIV 352

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + LE IL   R I +GRI+ VFGCGGDRD+ KRPIMG+IA  L+D+ +VT DNP
Sbjct: 353 DYAHTPDGLENILNTAREIAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNP 412

Query: 421 RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           R+EDP +I  E+  G+          +  +R  AI  A+ +  K D++++AGKGHE   I
Sbjct: 413 RTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHENYQI 472

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + +       D ++ RE + 
Sbjct: 473 LKDKTIH-FDDKEVAREAVA 491



 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 159/450 (35%), Gaps = 30/450 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   +++ +D+R I AG +FVA+ G + DG  F  QA+ +GA  ++V    ++    A
Sbjct: 518 AADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEA 573

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +     +L   +T       A+    K    ++A+TG++GK++       +        
Sbjct: 574 KLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKDLTAAVL------- 626

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G    +   A +       P+ L   L   ++     V +     G           
Sbjct: 627 ---GACLLVQKTAANYNNEIGLPLTL---LGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 680

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++   + +    AK  L E + P     I+ ADDA    + ++A  AG
Sbjct: 681 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEP-GGTVILNADDARVLAMREKAK-AG 738

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALVA 318
            RV++ G      +    V       +  +  +      +  +   P+PG   V NAL A
Sbjct: 739 VRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 798

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
                 +G+  A V   L        +  F            D Y  +  S    LK + 
Sbjct: 799 IAAARVLGLSLADVRRGLA--VPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTLA 856

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GI 436
            + +GR I V G   +     +     +  + A +        R E+   I       G+
Sbjct: 857 EMFAGRKIAVLGDMLELGSASKSGHASVGEEAAHLG-FAAVLSRGEESRFIAEAAKAGGV 915

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           P      +   A     E+L   D ++  G
Sbjct: 916 PLVERMTSHEAAAARLKEILQPGDAVLFKG 945


>gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate
           ligase [Pseudomonas fluorescens SBW25]
          Length = 487

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 239/485 (49%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IF    R+  I E++ DSR+++AG +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V    K LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPITDVPLIPVKGLAKQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G          Q    TTP+PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDLLGQHCGIVGTLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T +AY  AK +LF          ++  DDA
Sbjct: 179 HGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFA--WNDLKCRVVNLDDA 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++      A     S+     ++  ++        + T+     +      L G F 
Sbjct: 237 FGRQLAAEDSEARLISYSLEDSSAYLFCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L  L KL    GR + +G   +   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAIGALLGLDYALDEILRVLPKLEGPAGRMQRLG-GGKQPLVVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ +R    G+++ +FGCGGDRD+GKRP+M +I   LAD  +VTDDNPRSEDP +I  +
Sbjct: 356 VLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQIFDD 415

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G   +        R  AI   I   +  DV+V+AGKGHE    + NGE+    D   
Sbjct: 416 IRAGFNDVSKAAFVAGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGERHAFSDLVE 474

Query: 489 IREIL 493
               L
Sbjct: 475 ADHAL 479


>gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 184/490 (37%), Positives = 266/490 (54%), Gaps = 13/490 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K    L +   + P + ++  +   + DSR +  G++F A  G K +G  FI +AI  
Sbjct: 4   TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAI-- 60

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
                  + A ++             LV +N R   +  A+R Y   P  + AVTGT+GK
Sbjct: 61  ------AAGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SVA   +Q+   +G  +  IG    I++       +TTP  +      S L+   ++HV
Sbjct: 115 TSVAELCRQLWTITGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EASSHGLDQ+R DG K+IAG+FT+  RDH+DYH T + Y  AK+RLF+E +  +  A+
Sbjct: 175 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I+ADD  +  V+      G +++ +G + + I L    A    Q +T+S++G+ +    P
Sbjct: 235 IWADDPAATTVIAHVQKRGLKLIDIGEKAEAIRLVNREADSQGQMITLSIKGESYKIRLP 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G +Q+ NALVAAGL +A G D    +  L  L  V GR E    +  G  +YVDYAHT
Sbjct: 295 LIGGYQLSNALVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L   ++ +R  T G + VVFG GGDRD+GKRP MGKIA +LAD  IVTDDNPR ED 
Sbjct: 355 PDGLRAAIEALRPHTEGLLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 414

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK---KM 482
             IR E++ G P   E G R EAI +AI+   K D++++AGKGHE   I+  GE      
Sbjct: 415 ATIRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 474

Query: 483 SVDCDIIREI 492
             D  + +E 
Sbjct: 475 FDDVTVAKEA 484


>gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
 gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
          Length = 467

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/456 (38%), Positives = 258/456 (56%), Gaps = 2/456 (0%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR ++ G++F A+ G K  G  FI  A+ QGA AI+  +  +    +    S+  ++V
Sbjct: 1   MDSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSLSDAALVV 60

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            ++ R+ L+  A+  +G  PE ++AVTGT+GK+SVA+F +QI +R G  +  +G T    
Sbjct: 61  AEDPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGVEG 120

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           +++     TTP PI L + L+     GVTH ++EASSHGL Q RLDG+ L+A  FTN  +
Sbjct: 121 AYSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRLDGVHLVAAGFTNFTQ 180

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ- 273
           DH+DYH +   YF AK  LF  +LP++  A+I  +D+   E+   A   G  +++VG + 
Sbjct: 181 DHLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERGQDLITVGREV 240

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           G  + LK        Q +    E +       L G FQ  N L+AAGL I  G D+  V 
Sbjct: 241 GADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGADAERVF 300

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           E L  +  V GR +   T   G  ++VDYAHT +++   +K +R    GR+I + G GGD
Sbjct: 301 ETLPGMKTVRGRMQLAATRDTGATVFVDYAHTPDAVATAIKALRPHVMGRLIAIVGAGGD 360

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           RD+ KRP+MG+ A   AD+ IVTDDNPRSEDP  IRA ++ G PG  E G+R EAI   +
Sbjct: 361 RDRAKRPLMGQAAGTYADLVIVTDDNPRSEDPASIRAAVMQGCPGASEVGDRAEAILRGV 420

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + L   D L++ GKGHET  +V   +     D +  
Sbjct: 421 DALGPGDALLICGKGHETGQVVGE-DVLPFDDAEQA 455


>gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
 gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
          Length = 492

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLSPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDGR---FAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 496

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/498 (33%), Positives = 252/498 (50%), Gaps = 27/498 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F EL+  +            +  ++ DSR ++  ++FVAI G + DGH +I +A+ +GA 
Sbjct: 3   FRELLEAVEADAAGGDLNAVVEGIAYDSRQVRPRFLFVAIKGFRADGHEYIGEALERGAL 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKS 127
           A+V+     L              +V + R+ L+L ++R YG       ++ VTGT+GK+
Sbjct: 63  AVVMERRVEL-------PPGVAWALVPDARRALALLSARFYGNPSFKMKLIGVTGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S +  I   +G     IG  +  I       + TTP    L + L  +  + V    
Sbjct: 116 TTTSLIADILAGAGCRVGLIGTVNNRIGDRVLPVKHTTPESADLQQLLHEMVIEKVDACV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKE 241
           +E SSH L  HR+DG +     FTNL +DH+D+H+  + Y  +K++LF+ L       + 
Sbjct: 176 MEVSSHALALHRVDGSEFDLAVFTNLTQDHLDFHRDMEDYLESKLKLFKWLGRPGHKREA 235

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF 300
             A+I ADD ++ + ++ A      V + G +    +  + +          ++ +    
Sbjct: 236 GIAVINADDPHAGQFIRAAGGT---VYTYGIKNAADVRAESISIGARGACFGVAGKWGRL 292

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + G F VYNAL A     A+G+ +  + E LEK    PGRFE V  + +   + V
Sbjct: 293 RLDLRITGLFNVYNALAAFTASAAMGVPAEEIKEALEKARGAPGRFEMVD-SGQDFAVVV 351

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + LE ILK  R IT GR+I VFGCGGDRD+ KRP+MG IA   +D AI+T DNP
Sbjct: 352 DYAHTPDGLENILKTARKITEGRLITVFGCGGDRDRTKRPLMGGIAARYSDFAIITSDNP 411

Query: 421 RSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R+EDP KI  EI  G+       ++ + +R +AIR A+EM  + DV+V+AGKGHE   I+
Sbjct: 412 RTEDPLKIIKEIEEGMKTAGWERYVTEPDRRKAIRLAVEMARRGDVVVIAGKGHEDYQII 471

Query: 476 TNGEKKMSVDCDIIREIL 493
               K    D       L
Sbjct: 472 GT-RKIPFNDRREAAAAL 488


>gi|329298854|ref|ZP_08256190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plautia stali symbiont]
          Length = 495

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/505 (32%), Positives = 248/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P  +            R + +++ DSR   AG +F+A+ G+  DG  FIP
Sbjct: 5   NLRDLLAPWVPGALA-----------RPLRDMTLDSRAAAAGDLFIAVAGHHADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  A++  +     D         P++ +    + LS  A R Y +  +   ++ 
Sbjct: 54  QAIAQGVAAVIAEAEGEASDGDIREMHGVPVIYLAQLPQRLSALAGRFYQQPADKLKLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q     G +   +G     +      +  TT S + +   L  L 
Sbjct: 114 VTGTNGKTTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVPSENTTGSAVDVQHILHDLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH   Q Y +AK  LF E  
Sbjct: 174 GQGATVAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQGYESAKWLLFSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   AII ADD   +  +++  +A    LS     G +G+++    +        V  S
Sbjct: 232 HQVGEAIINADDEVGRRWLEKLPDAVAVTLSNNLQPGCRGRWLQATVIDYHDGGAHVQFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +F   L G F V N L+A    + +      ++    +L  V GR E V T   
Sbjct: 292 SSWGNGEFDSRLMGAFNVSNLLLALATLLTLDYPLDTLVASASQLQPVCGRME-VFTAVH 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA   ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPRSE+P  I  +I+ G+           R +A+  A+   +  D+++VAGKGHE 
Sbjct: 411 ITDDNPRSEEPTAIINDILTGLLDPGRACVIAGRAQAVTHAVMQASADDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ N     S D D +  +LG++
Sbjct: 471 YQIIGNRRLDYS-DRDTVARLLGVM 494


>gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
 gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
          Length = 493

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/470 (33%), Positives = 228/470 (48%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR +Q G +FVA  G   DG  +IP AIA GA  +   S      F+         
Sbjct: 27  LRMDSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSG---DGFAWRPEWQIAN 83

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V + ++   L A++LYG    ++     TGT+GK+S++ ++ Q           IG  
Sbjct: 84  LGVPHLKQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTV 143

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG   V++E SSHGLDQ+R+ G    +  F
Sbjct: 144 GNGFWGRLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPFSSAIF 203

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRV 267
           TNL RDH+DYH +  AY  +K +LF         AII  DD + +E+    RA      V
Sbjct: 204 TNLTRDHLDYHGSMAAYGASKAKLF--YWQSLQHAIINTDDEFGRELAAGLRADRPNLNV 261

Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              G+ +   I + +  A     QV         +    L G F   N     GL  A G
Sbjct: 262 YGYGFNEQADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEG 321

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL  L ++    GR + +    R   + VDYAHT ++LE  L  +R I      +
Sbjct: 322 YSLPDVLRVLAQIRPATGRMDCISRAGR-PLVVVDYAHTPDALEKALATLREIKPQGASL 380

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  ++T DNPR E+P+ I A+I+  +P   + + 
Sbjct: 381 WCVFGCGGNRDRGKRPLMGSAAVQGADKVVITSDNPRMEEPQDIIADILPAVPQPALVEA 440

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AI+TAI     QD++++AGKGHET   V  GEK    D +I    L
Sbjct: 441 DRRVAIQTAIRRAAPQDIVLIAGKGHETYQDV-QGEKHHFSDFEIAEAAL 489


>gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 492

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 233/501 (46%), Gaps = 25/501 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  +   +FP L+   +   +         + SDSR I+ G IFVA  G   DG  +IP 
Sbjct: 5   LSPIAETNFPPLLCANAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIPA 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV-- 120
           AIA GA  +          F        P   + + +    + A+++YG   +++     
Sbjct: 56  AIANGAAFVFWDDDG---KFEWNPEWEVPNQGIKDLKHRAGMLAAQVYGNVSDDLKVWGV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L     
Sbjct: 113 TGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFRQ 172

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF     
Sbjct: 173 QGATAAAMEVSSHGLDQSRVNGVPFRSTIFTNLTRDHLDYHGTMEAYGAIKSRLF--YWH 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
               A+I  DD Y  E+  R         V S G+ +   I +    A  +  +      
Sbjct: 231 GLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEHADIRIVHFTASSDGMEAVFQTP 290

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +      L G F   N      L  A G     VL+ L K+    GR + +  NS   
Sbjct: 291 WGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKP 349

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  +
Sbjct: 350 LVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVV 409

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE   
Sbjct: 410 VTSDNPRLENPQDIINDILPAVPAPECVEADRATAIRYAVERAASSDIILIAGKGHENYQ 469

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            +  G K    D ++  + L 
Sbjct: 470 DM-QGVKHHFSDFEVAEKALA 489


>gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya dadantii Ech703]
 gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703]
          Length = 494

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 172/495 (34%), Positives = 254/495 (51%), Gaps = 13/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   AG +FVA+VG+K DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVANAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +  +  + +       P++ +D+  + LS  A R Y    +   ++ VTGT+GK++ 
Sbjct: 64  VAQADAASPNGTCCELHGVPVVYLDDLNQRLSALAGRFYQHPSDTLQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A  + Q  Q  G +S  +G     +         TT S + + + LS   +QG    ++E
Sbjct: 124 AQLLAQWTQALGKTSAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFVAQGAQVAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR++ +   A +FTNL RDH+DYH     Y  AK RLF E   +   A+I A
Sbjct: 184 VSSHGLVQHRVEDVSFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFSE--HRVGQAVINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFP 305
           DD   +  ++R  +A    +       +   LK     ++    T+  +           
Sbjct: 242 DDEVGRRWLERLPDAVAVSVRGDIGAARRQWLKATRVDYHNSGFTVHFDSSWGQGVIDSS 301

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F V N L++    +++G     ++     L  V GR E    + R   + VDYAHT
Sbjct: 302 LMGAFNVSNLLLSLATLLSLGYPLEQLVITGSTLQPVCGRMEVFVADGR-PTVVVDYAHT 360

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSEDP
Sbjct: 361 PDALEKALEAARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQLADRVIVTDDNPRSEDP 420

Query: 426 EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I ++I+ G+           R EA+ +AI      DV++VAGKGHE   +V N     
Sbjct: 421 QAIVSDILSGLLDAGRVQAIAGRAEAVTSAIMQAAADDVVLVAGKGHEDYQLVGNERLDY 480

Query: 483 SVDCDIIREILGLIL 497
           S D   +  +LG+I+
Sbjct: 481 S-DRITVARLLGVIV 494


>gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI18]
 gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID1]
 gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID24-1]
 gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
          Length = 492

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   + P L+   +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNIPPLLCANAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+  GA  +          F+       P   + N +    + A+++Y    +   +  
Sbjct: 55  AAVVNGAAFVFWDDDG---KFAWNPEWKVPNQGIKNLKHRAGMLAAQVYDNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E++ R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAIINVDDEYGAELIGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 489

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/507 (30%), Positives = 254/507 (50%), Gaps = 34/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ LI KD P      +      +E +I  + + S+ +  G +F+A  G   DG  +I
Sbjct: 1   MKLKRLI-KDLP------NAEIKGSKEIEITGICAHSKQVAPGNLFIAKKGRTFDGSQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            +A+  GA A++          S  I  N  ++             S  Y +  E +L  
Sbjct: 54  AEAVETGAAAVLNDIFDPSLKVSQIIHPNVAVVE--------GKLVSAFYHRPGEELLMV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V+  ++ +     +    IG     I   A     TTP      K L  +
Sbjct: 106 GVTGTNGKTTVSYLIKHLFDSLEMRPGLIGTIEYLIGDHAAPATHTTPDVATNHKLLREM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +Q      +E +SH L Q R+  I    G FTNL +DH+DYH+T  AY   K +LF  L
Sbjct: 166 VNQRSQAAVMEVTSHALHQGRVSEISFDVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSL 225

Query: 238 LPKESP-------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ 289
            P+          A++  DD + ++++         +++ G      +  +++       
Sbjct: 226 DPEAKKRKNYPKAAVVNIDDPWFEKIID---GCRVPIITYGIANHADLRAEEIQLGAEGI 282

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             T+  +GK +    PL G F V N+L   G  I++G+    VL+ ++    VPGR E+V
Sbjct: 283 VYTLVHQGKRYPVSLPLIGRFNVLNSLATIGCGISLGVPLNKVLDAVKSFPPVPGRLEYV 342

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N RG +++VD+AHT ++L+ +L  ++ +T G++IVVFGCGGDRD  KR  MG+IA + 
Sbjct: 343 P-NKRGLKLFVDFAHTPDALKNVLNCLKELTQGKLIVVFGCGGDRDPYKRSQMGRIAEEF 401

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +D+AI+T DNPRSE+P  I  +I+ G      FI+  +R +AI  AI     +DV+++AG
Sbjct: 402 SDLAIITSDNPRSENPANIMDQIVAGFNDPSCFIKIEDRRKAIEEAIHRATPEDVVLIAG 461

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           +GHE   I  +   +   D +++ +IL
Sbjct: 462 RGHEPYQIFAHQTIE-FKDREVVEDIL 487


>gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
 gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
          Length = 462

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 155/477 (32%), Positives = 246/477 (51%), Gaps = 31/477 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I  G +F+A+ G + DGH +IP AI +GA A++        +    +++
Sbjct: 2   EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLCE------ELPEELKA 55

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG       ++ VTGT+GK++VA+ +    +  G   ++
Sbjct: 56  GITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFG---YK 112

Query: 147 IGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +G  ST+ ++  D       TTP PI L + L  ++  G  +  +E SSH + Q R+ G+
Sbjct: 113 VGLVSTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGL 172

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G FTNL RDH+DYH+T + Y  AK + F+EL PK + ++   DD      +    N
Sbjct: 173 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEL-PKGAFSLTNLDDKNG---LVMTQN 228

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +V +   +       KV   H +  +   ++  + +      G+F  YN L   G  
Sbjct: 229 TRSKVYTYSLRSLSDFKGKVLESHFEGML---LDFNNHELAVRFIGKFNAYNLLAVFGTA 285

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--T 380
           + +G     VL  L  LH V GRF+ +  + +G    VDYAHT ++L  +L  I  +   
Sbjct: 286 VLLGKKEEDVLVALSTLHPVTGRFDAI-RSPKGYTAIVDYAHTPDALVNVLNAIHGVLEG 344

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG----- 435
            G++I V G GG+RD+GKRPIM K +  L+D  I+T DNPR E+P+ I  +++ G     
Sbjct: 345 KGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLAGLDKDD 404

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   I   +R EAI+TA  +    DV++VAGKGHE    +  G K    D +I+ EI
Sbjct: 405 MQKTISITDRREAIKTACMLAQPGDVILVAGKGHENYQEIK-GVKHHFDDKEILNEI 460


>gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID332]
 gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
 gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 492

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 233/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLSPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDGR---FAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N     GL  A G     VL+ LEK+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIGLLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
          Length = 492

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLSPLAETGIPTLSCANAAGHL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
 gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
          Length = 480

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 205/485 (42%), Positives = 285/485 (58%), Gaps = 19/485 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+  +        +    Q  E  +  V+ DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MKLRDLLRGE--------AAIDPQAAELAVAGVAVDSRAVKPGDVFFALGGHKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A         V +            ++ P++V D+ R+ L+L A+ +Y + P  I AV
Sbjct: 53  EAA---------VKAGAVAVVTGHPHTASVPVVVADDPRRALALAAAVVYPRQPRTIAAV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +Q+    G ++  +G    +S         TTP P+ L +A+  L+ 
Sbjct: 104 TGTSGKTSVAAFTRQVWDSLGHNAASLGTIGIVSRHRNVYGSLTTPDPVALHRAIDELAG 163

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASSHGLDQHRLDG+++ A +FTNL RDH+DYH T + Y   K+RLF +L P
Sbjct: 164 DGVTHLALEASSHGLDQHRLDGVRITATAFTNLSRDHMDYHPTVEHYLATKLRLFTDLAP 223

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + +PA+I AD  +S  V+  A      V++VG QG+ I L +       Q++T+   G++
Sbjct: 224 EGAPAVIAADHEHSATVIAAARTHKLNVMTVGRQGEGIRLVEAAIDGFGQRMTVEHRGQN 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL GEFQ+ NALVAAGL I+ G D+A     LE L    GR E VG +  G  ++
Sbjct: 284 WRLRLPLVGEFQIENALVAAGLVISTGGDAAQAFAALEHLEGAKGRLELVG-DRFGAPVF 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L   L+ +R    GR++VVFG GGDRD GKRP+MG+IA   AD  IVTDDN
Sbjct: 343 VDYAHKPDALVKALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGEIAARHADTVIVTDDN 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSEDP  IRA I+   PG    G+R EAIRTA+  L   DVL++AGKGHE   IV +  
Sbjct: 403 PRSEDPAAIRAAILEAAPGAQNIGDRAEAIRTAVAALAPGDVLLIAGKGHEIGQIVGDKV 462

Query: 480 KKMSV 484
              S 
Sbjct: 463 LPFSD 467


>gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 492

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLSPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
 gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
          Length = 488

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/503 (32%), Positives = 249/503 (49%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+        +  S  P+      I  +  DSR ++ G +FV I G   DGH F 
Sbjct: 1   MKLQTLLQ-------HLHSFTPLATENPTITSIEMDSREVKQGSLFVCIKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            Q          V+           +    P++ V+++R+ L++ A   YG+  H  +++
Sbjct: 54  EQ---------AVARGAVAVVAEKPLALPVPVIYVNDSRRALAVLADAFYGQPTHQLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    +++IC+ +G  +  IG  +  I     D + TTP  + L      +
Sbjct: 105 GVTGTNGKTTTTHLIERICRHAGKKTGLIGTINMKIGDDTYDVKNTTPESLVLQNMFRKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V  V++E SSH L   R+ G       FTNL +DH+DYH+T + Y  +K  LF +L
Sbjct: 165 VDAHVDIVAMEVSSHALHMGRVHGCDFDVAVFTNLTQDHLDYHRTMEHYRWSKGLLFAQL 224

Query: 238 LPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
             +        AI+ ADDA S+E  K   +    V++ G   K  I  K++    +    
Sbjct: 225 GNRFDHQRPKFAILNADDAASEEYKK---STAATVVTYGIHHKSDIMAKQIEITTSGTTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +       L G F VYN L A   C+   I  + ++E +  +  VPGRFE V  
Sbjct: 282 QLITPIETVQVKTKLIGMFNVYNLLAAVAACLVSNIPLSTIVEAIADIEGVPGRFEVVDA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT +SLE +L+ IR     R+ VV GCGGDRD+ KRP+M +IA+  +D
Sbjct: 342 -GQPFTVIVDYAHTPDSLENVLQTIRQFAKKRVFVVVGCGGDRDRTKRPLMAQIAVKYSD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           + I T DNPRSEDP  I  ++  G+    +   +R EAI  AIE   K D++++AGKGHE
Sbjct: 401 VPIFTSDNPRSEDPLVILNDMKQGVAEDVVCIVDRKEAITYAIEQAEKDDIILIAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D  + RE +
Sbjct: 461 TYQII-GKDVFHFDDRVVAREAI 482


>gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
 gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
          Length = 485

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/496 (31%), Positives = 256/496 (51%), Gaps = 28/496 (5%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +++  + I  +  + +  I ++S DSR ++   +F+ I GN  DGH +I  AI +GA
Sbjct: 2   ELLKILKDVEILSVNGQVDIDIEDISYDSRKVKQNSMFLCIRGNTVDGHNYIDDAIQKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            AI++    S        +     + V+N ++ +++     +    +   ++ VTGT+GK
Sbjct: 62  IAILIDKKIS-------YKKGITYIRVNNVKESMAIIGKNFFQNPCQKINLIGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGV 182
           +S  SF++QI         ++G   TI  +          TTP  + + K L+ +     
Sbjct: 115 TSTVSFIKQIL----GYDCKVGSIGTIEIYDGKKTITSINTTPESLDIQKNLNEMIKNNC 170

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSH L  +R+D I   A  FTNL +DH+D+H+T + Y NAK +LF      +S
Sbjct: 171 KYCVMEVSSHALVLNRIDNIDYEAAVFTNLTQDHLDFHKTLENYKNAKEKLF---YKTKS 227

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             I   DD   +E   ++ N   +  + G +         +    ++ +  + ++ + + 
Sbjct: 228 INIFNIDDKVGEEFFNKSLNRDIKTYTYGVEKEADFKAANIKLYDDRTEYDLIIDKQKYK 287

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+ G F VYN L A   CI +G+    V++ ++ L  V GR + V  N +   I VD
Sbjct: 288 VSTPILGNFNVYNTLAAITTCILLGLSREDVIKRVQNLKSVSGRLDKV-ENDKNVNIIVD 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  ILK+ R  T  RII+VFGCGG+RD+ KRPIMGKIA   ADI+I+T DNPR
Sbjct: 347 YAHTPDALLNILKSARLFTKNRIILVFGCGGNRDKAKRPIMGKIAQQNADISIITSDNPR 406

Query: 422 SEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            E    I  +I+ GI      +    +R ++I+ AIE+    D++++AGKGHE   I  +
Sbjct: 407 FEKEMDIIEDILCGIDKTLDNYFVVQDREDSIKKAIELYEVGDLIIIAGKGHENYQIKGD 466

Query: 478 GEKKMSVDCDIIREIL 493
            +K    D  I ++IL
Sbjct: 467 -KKYFFDDKLIAKKIL 481


>gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 487

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 154/485 (31%), Positives = 241/485 (49%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IFP    +  I E++ DSR+++AG +F+A+ G + DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFPHAGHDLLIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    +  P++ V      LS  A R YG+     N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPITEVPLIPVKGLAAQLSDIAGRFYGEPSHHLNLIGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   +      Q    TTP+PI +   L  L   G   V++E SS
Sbjct: 119 VAQALDLLGQHCGIVGTLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T +AY  AK +LF          ++  DD 
Sbjct: 179 HGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMEAYAEAKAKLFA--WNDLKCRVVNLDDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++      +     S+     ++++++     +  + T+     +      L G F 
Sbjct: 237 FGRQLAAEKRESRLITYSLLDSSAYLYVREAQFDDHGVRATLVTPQGEHHLRSTLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L+ L KL    GR + +G  ++   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAVGALLGLDYALDEILKVLPKLEGPAGRMQRLGGGTQ-PLVVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +R    G+++ +FGCGGDRD+GKRP+M ++   LAD  +VTDDNPR+EDP  I  +
Sbjct: 356 VLTALRPHVKGQLLCLFGCGGDRDRGKRPLMAEVVERLADRVLVTDDNPRTEDPAVIFDD 415

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G   +        R +AI   I   +  DV+V+AGKGHE    + NGE+    D   
Sbjct: 416 IRAGFTAVDNVTFVAGRGQAIAQLIAGASADDVIVLAGKGHEDYQEI-NGERHAFSDLVE 474

Query: 489 IREIL 493
               L
Sbjct: 475 ADHAL 479


>gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 487

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 154/501 (30%), Positives = 253/501 (50%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   E +      P       +N +  DSR +    +FVAI G + DGH FI +
Sbjct: 4   LKDILYKVTLESVTGNPNVP-------VNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A  QGA AI+               +    +   +T + L++ AS  Y    E   ++ +
Sbjct: 57  AEEQGAIAIICEQ------MPEDFVNGITYVQTSDTAQALAVMASNYYENPSENLKLVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++A+ + Q+  ++G  +  +      +         TTP  + + K L+ ++ 
Sbjct: 111 TGTNGKTTIATLLHQLFTKAGFKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAMMNE 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV +  +E SSHG+ Q R +G+    G FTNL  DH+DYH+T   Y + K   F+ L P
Sbjct: 171 AGVEYCFMEVSSHGIHQKRTEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKKSFFDNL-P 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K + A+   DD   + ++    N   + ++   +    +  ++      Q   + ++  D
Sbjct: 230 KTAFALSNIDDKNGQVML---QNTRAKKVTYALKSFADYRAQIL---ENQFTGLLLKVND 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F  YN L        +G+     L++L +L  V GRF+++  +++     
Sbjct: 284 QEVWVKLIGSFNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSGRFQYM-ISAKKITAI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I  I +    +I V GCGGDRD+ KRP MGKIA  L+   + T 
Sbjct: 343 VDYAHTPDALKNVLETINDIRTKNEELITVVGCGGDRDRTKRPKMGKIAAALSTKVVFTS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPRSEDP+ I  EI  G+        +   +R +AI+ A +M  + D++++AGKGHET 
Sbjct: 403 DNPRSEDPDTIIEEIEAGVEPVDYKKTVAITSRKQAIKAACQMAEENDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V NGE+    D  I++E+L
Sbjct: 463 QEV-NGERTDFDDFKIVKELL 482


>gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
 gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
          Length = 974

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 254/486 (52%), Gaps = 18/486 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L     ++ +  ++ +  DSR +Q G +FVA+ G+  DG  +I  A+ +GA A++  
Sbjct: 10  LGDLLAVEAEFADVMVSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGASAVLAD 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                 +       N  ++  D+ R  L   ASR Y +  +   ++AVTGT+GK++V+  
Sbjct: 70  RVGVSAEQVVNAHGN--VIWRDDLRSELGDIASRFYDEPSKQMRVIAVTGTNGKTTVSHL 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++  R G S+  IG               TTP  I L + L+     G   V++EASS
Sbjct: 128 LVRLLMRLGESAKTIGTLGYGHPDHLIPLANTTPDAIQLHEILAACREDGARFVAMEASS 187

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ RL  +++    FTN+ RDH+DYHQT QAY+ AK +L           ++ ADDA
Sbjct: 188 HGLDQGRLGCVEISTAVFTNITRDHLDYHQTMQAYWEAKAKLAS--WHGLRNLVLNADDA 245

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              ++   A   G +++    +      + L +         + I V+ + + F   L G
Sbjct: 246 GVAKMAAVAE-HGVKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTRLMG 304

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTS 366
           EF V N L      ++ G  ++LV++ L+++  V GR + +   + ++   + +DYAHT 
Sbjct: 305 EFNVANILAVLAALVSEGFSASLVVDALKEIAPVKGRMDCLPHTSGAQLPAVVIDYAHTP 364

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++L+  L  +R    +G++  VFGCGGDRD+GKRP+MGKIA   AD  +VT DNPRSE P
Sbjct: 365 DALQQALNALRHHCTTGKLWCVFGCGGDRDKGKRPLMGKIAASSADRVVVTSDNPRSEVP 424

Query: 426 EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I AEI  G+    +     +R EAIR AI +   +DV+++AGKGHE    V  G +  
Sbjct: 425 DVIIAEIRGGMEATDQVRLVTDRGEAIRDAIFLAAPEDVILIAGKGHEDYQEVR-GVRSH 483

Query: 483 SVDCDI 488
             D ++
Sbjct: 484 FSDHEV 489



 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 96/457 (21%), Positives = 172/457 (37%), Gaps = 47/457 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +     VS+D+R +++  +F A+VG K D H F+ QA   GA   VVS    +     
Sbjct: 534 GEDLPFAGVSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGACGAVVSRWVDV----- 588

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P + V++TR  L  +A     +    ++AVTG+SGK+SV   +  I    G   
Sbjct: 589 ----DLPQIKVEDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEMLAAIFSEEGRVL 644

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +                      L    S     + + A+  G   + +  ++ 
Sbjct: 645 ATSGNLNN-------------DIGVPLTLLRLDDSYQFAVIELGANHVGEIAYTVGLVRP 691

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A   TN+G  H++   ++     AK  ++  L+PK   A++  DD YS++ +    +  
Sbjct: 692 DAALITNVGEAHLEGFGSRNNIAKAKSEIYTGLVPK-GVAVVNLDDDYSQDFLTLNASRN 750

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+         K        + ++ +S+ G+       L G+ Q+ NAL AA    
Sbjct: 751 VLTFSIENTRANCFAKSWSLDPVGRPRIEVSINGELIQLSLNLIGKHQIANALAAAAAAR 810

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G     + + L KL    GR  F  +  R   I   Y    +S+   +  +  +   +
Sbjct: 811 AAGASLTSIRDGLNKLQPFKGRM-FPKSLGRWHWIDDTYNANPSSMRAAIDALARLDEPK 869

Query: 384 IIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTD-----DNPR-------------SE 423
           ++++   G   +Q       +G  A       +        D  R              +
Sbjct: 870 VLILGRMGELGEQSAKLHADIGAYAARAGIRRLFISRDDAGDYARGYRSVTNDGQLFVGD 929

Query: 424 DPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNK 458
            PE I  ++I  +P    + KG+R  A+    +   K
Sbjct: 930 GPEAIAKQLIESMPEGVVLVKGSRSAAMEKVFDEAQK 966


>gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
 gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
          Length = 495

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/471 (33%), Positives = 249/471 (52%), Gaps = 9/471 (1%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA A++  +           R  
Sbjct: 27  ITHLELDSRQIKSGDTFVAIRGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQIEYREA 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ +    + LS  A RLYG H   ++ VTGT+GK+++   + Q  +  G  +  +G 
Sbjct: 87  VPVMYLSELGQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
           T     +  +    TT + + +   L  L+ +G  + ++E SSHGL Q R+  +  +AG 
Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLWDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRV 267
           F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA   + +K+   A    +
Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++     + I  ++V    +   +       + +   PL GEF   N L+A    +++G 
Sbjct: 265 VTKPDTAQAIWARQVEYAESGITLNFDSSWGEGELHAPLIGEFNACNVLLAFATLLSLGF 324

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + + +L    +L  V GR E      +  +I VDYAHT ++LE  L+ +R   +G++  +
Sbjct: 325 EKSALLATAPQLRPVIGRMELFQREQK-AKIVVDYAHTPDALEKALRALRVHCAGQLWAI 383

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGN 444
            GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+++ G+        + +
Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVVGLTHPERAHIEHH 443

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           R +A   A++    QD++++AGKGHE   ++ N     S D +  +++L L
Sbjct: 444 RFQAASYALQNAGAQDIILLAGKGHEDYQVLANETIHYS-DRETAQQLLEL 493


>gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
 gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
          Length = 493

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 248/485 (51%), Gaps = 17/485 (3%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L  F +Q     + ++  DSR +  G +FVAI G++ DG  FI QA+AQGA A+V     
Sbjct: 9   LRPFGIQAPALTLTDIQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVVFEEDG 68

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
                S       P + + +    LS  A   Y +  + +  + +TGT+GKS+ A  V  
Sbjct: 69  EFIPPSTP----VPCIGMRDLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLVAN 124

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                G  +  +G     +     +   TT S + +   L+ L +QG   V++E SSHGL
Sbjct: 125 WRTLLGGKAGVMGTIGNGLFGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            QHR+  +   A  FTNL RDH+DYH T +AY  AK +L +  L  ES A+I  DD    
Sbjct: 185 VQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAKEQLLQ--LVDESNAVINRDDELGA 242

Query: 255 EVMKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++   A    ++     + G+ +  +++       +  I+    +     PL G F 
Sbjct: 243 KWLEKYPAAVAFSVNGPIEHHSGRQLTAQQLDFHQQGFRAQINSSWGNGVLSAPLLGRFN 302

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L A G+ + +G D   +L    KL  V GR E  G         VDYAHT ++LE 
Sbjct: 303 VSNVLAAMGVMLVLGYDFNELLATAPKLQPVTGRMECFG-GGDTPLAVVDYAHTPDALEK 361

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  +A   AD  I+TDDNPR+E+P +I A+
Sbjct: 362 ALQALRVHCTGQLWCLIGCGGDRDRGKRPMMAAMAEQYADRVILTDDNPRTEEPARIMAD 421

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R++AI  AI   +KQD+++VAGKGHE   I+   +K+   D + 
Sbjct: 422 MVAGLRDPAAVQVEHDRVKAIALAIGQASKQDIILVAGKGHEDYQIIGT-DKRHYSDRET 480

Query: 489 IREIL 493
           +   L
Sbjct: 481 VAAAL 485


>gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
          Length = 492

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLSPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDGR---FAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
 gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
          Length = 485

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/503 (30%), Positives = 246/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++     + I       +     ++N +  DSR ++ G++FVA+ G + DGH +I
Sbjct: 1   MKLENMLKAVNAQQI-------IGTTNLEVNGIHMDSRMVKNGFMFVAVKGTQADGHNYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  IV             I SN   + + +T + +   A+  YG     +  +
Sbjct: 54  SKAIENGATVIVCEQ------LPVQIESNVTYVQLTDTEEAVGKLATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + +  G  +  I      I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRLFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+    G FTN+ RDH+DYH+T + Y  AK   F+ L
Sbjct: 168 ADEGCKYVFMEVSSHSVVQKRISGLTFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK++ A+   DD     +     N   +V +          K      +   + + +  
Sbjct: 228 -PKQAFALTNLDDKNGTVM---TQNTQAKVAAYSLHS-LCDFKGKVLEDSFDGMLLDINN 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++ +      G F   N L   G    +G     +L  L  L  V GRF+    + +G  
Sbjct: 283 REVNV--QFIGRFNASNLLAVYGAACLLGKRPEDILVKLSMLRPVSGRFD-AKRSPKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L+ I  +    G++I V G GG+RD+GKRP+M K +   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLEAIHEVLRGRGQVITVVGAGGNRDKGKRPLMAKESAQRSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  +   QDV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLSKDDMKKVISIVDRKEAIRTACMLAQPQDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   V  G K    D +++ EI 
Sbjct: 460 TYQDVK-GVKSHFDDKEVLDEIF 481


>gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris
           DP4]
 gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris DP4]
          Length = 486

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/471 (34%), Positives = 242/471 (51%), Gaps = 15/471 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +DSR +  G +FVA+ G   DG  FI QA+AQGA  +V   A  LQ       +   
Sbjct: 21  QIRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVC-RADGLQHLPEAAFA--- 76

Query: 92  ILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + V D+ R  L       YG    P  ++ VTGT+GK+++   ++ +   +G     +G 
Sbjct: 77  VAVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGT 136

Query: 150 TSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            S       +    TTP  + L + L  ++  GV    +E SSH LDQ R+ GI+     
Sbjct: 137 VSYRWPGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAV 196

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL +DH+DYH   + YFNAK RLF EL        + ADD + + ++     A    L
Sbjct: 197 LTNLTQDHLDYHGDMETYFNAKARLFRELPEVSKHCAVNADDPWGRRLLADLPGAVGFAL 256

Query: 269 SVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +       + +H + +        + +  EG+ ++   PL G     N L    + + +G
Sbjct: 257 TGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLG 316

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +  A  + HLE    VPGR E + TN RG  ++VDYAHT ++L  +L+ +R +   RI+ 
Sbjct: 317 LSPADFV-HLENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRIVT 374

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KG 443
           VFGCGG+RD+ KRP+MG      AD+A++T DNPR EDP  I  ++  G+ G  E   + 
Sbjct: 375 VFGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVAEA 434

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +R +AI  A+EML   D L+VAGKGHE    V +  K    D   IREILG
Sbjct: 435 DRRKAIALALEMLRPGDALLVAGKGHEDYQQVGD-RKLPFSDQQTIREILG 484


>gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 488

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/465 (32%), Positives = 232/465 (49%), Gaps = 13/465 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    AY ++  +  
Sbjct: 15  RDPLIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAV----AYEVEGSNVL 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
             ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V Q     G  
Sbjct: 71  PLTDVPLIPVKGLAAQLSDIAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQR 130

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              +G   T      Q  R TTP PI +   L+ L   G   V++E SSHGLDQ R   +
Sbjct: 131 CGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATAL 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TNL RDH+DYH T +AY  AK +LF    P  +  +I  DD + +++      
Sbjct: 191 AFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFA--WPNLNCRVINLDDDFGRQMAGLKQE 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +     S      +++ ++     +  + T+     +      L G F + N L A G  
Sbjct: 249 SRLITYSQLDSSAYLYCREAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +L+ +R    G
Sbjct: 309 LGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKG 367

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE- 441
           R++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPR+E   +I A+I  G     + 
Sbjct: 368 RLLCLFGCGGDRDRGKRPLMAEVVERLADGICVTDDNPRNESSSQIFADIRPGFTAADKV 427

Query: 442 --KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
                R +AI   I   +  DV+V+AGKGHE    ++   +  S 
Sbjct: 428 SFIEGRAQAIAELIAGASADDVVVLAGKGHEDYQEISGQRQPFSD 472


>gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 495

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/495 (34%), Positives = 252/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R + E++ DSR   AG +FVAIVG+K DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVQDTPARALREMTLDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           V  +     D +       P++ + N  + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  VAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +   A     TT S + + + LS L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVEQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A  FTNL RDH+DYH   ++Y  AK  LF E   +    II A
Sbjct: 184 VSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFGE--HRVGQMIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD      + +  +A    +      G +G+++   ++    N   +         +   
Sbjct: 242 DDEVGLRWLAQLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +++G     ++    +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFQAEGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV++VAGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 481 YS-DRITVARLLGVI 494


>gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
 gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
          Length = 487

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/507 (31%), Positives = 262/507 (51%), Gaps = 33/507 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++Y      I+QL    +    +++  V  DSR + A  +FVA  G + +GH+F
Sbjct: 1   MKVLKDILYGV---SIDQLQGSTL----KEVQGVYFDSRKVVAQSLFVATKGVQVNGHIF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  AI +GA  +V        D      +    +VV N+++ L + A+  +    + +  
Sbjct: 54  IETAIEKGATVVVCE------DLPGLTHAEVTYVVVPNSQEALGVMAANWFDHPSKKLSL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V S +  +  ++G  S  I      +   A +   TTP    +   L  
Sbjct: 108 IGVTGTNGKTTVTSLLYALFTKAGYPSGLISTIKILVGEKAYETAHTTPDVWTINAYLQE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + S+G++H  +E SSHG+ Q R+ G+      FTNL +DH+DYH+T   Y + K  LF+ 
Sbjct: 168 MVSEGLSHCFMEVSSHGIAQMRIKGLTFEGAIFTNLSQDHLDYHKTFANYRDTKKLLFDG 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L    + A++ +DD     ++    N   + +S G +G      ++       Q+ + ++
Sbjct: 228 L-STTAFALVNSDDKNGLFML---QNTKAKKMSYGLKGVADFKAQILENQFSGQL-LKID 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            ++      L G+F  YN L        +G+++  VL+H+  L  V GRF++  + ++  
Sbjct: 283 QQE--VWTTLLGQFNAYNILAIYATATLLGLNTLEVLQHISTLENVAGRFQYFISKNQ-I 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ IL+ I  I +    +I V GCGGDRDQGKRP+MG IA + +D  I
Sbjct: 340 TAIVDYAHTPDALDNILETIGQIRTKNEKLITVVGCGGDRDQGKRPLMGAIAAEKSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPRSE P  I  ++  G     I   +   NR +AI+TA  M   +D++++AGKGH
Sbjct: 400 LTSDNPRSETPIAILEQMEAGVSPVDIKKVLVVENRKQAIKTACMMATPKDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           E    +  G K    D +I++  L L+
Sbjct: 460 EKYQDIK-GVKTPFDDYEIVKNHLDLL 485


>gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis 8013]
          Length = 492

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 233/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+     N P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDDG---KFTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ LEK+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKR +MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
 gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
          Length = 496

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/501 (32%), Positives = 248/501 (49%), Gaps = 27/501 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL+  +    +      +I  +  DSR    G +F  I G   D H FIP     G
Sbjct: 3   KQLEELVALVPGAHVTGNAGTEITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++   A      S  +     +L V N ++ L       Y        ++ +TGT+G
Sbjct: 63  ARAVLTERA------SVDVPDGVAVLYVPNLQEALDTIVPYFYDYPARAMRVIGITGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  V+ I + +G     IG   + I         TTP  I L + L+ + ++G+  
Sbjct: 117 KTTTSYLVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDT 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPK 240
           V +E SSH L   R+ GI+    +FTNL +DH+D+H+T + Y  AK  LFE +      +
Sbjct: 177 VVMEVSSHALALGRVAGIEFDTAAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKE 236

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              A++ ADDA S+ +    H   C V++ G      +  + V    +  ++T+   GK 
Sbjct: 237 GKTAVLNADDAASETMRAHTH---CPVITYGVDHPADLTAQDVQLACDGMELTLMHGGKR 293

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            F     + G F V+N L A G  +A  +++A +   L     VPGRFE V    +   +
Sbjct: 294 LFHLHTGITGLFNVHNVLAAVGASLAEHVEAADISAALTAFTGVPGRFELV-REGQDFAV 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + +E +L+  R +T GRII VFGCGGDRD+ KRPIMG+I  ++ADIAI+T D
Sbjct: 353 IVDYAHTPDGMENVLRTARAVTKGRIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSD 412

Query: 419 NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           NPR+EDP  I  E+  G+        + +  +R  AI  AI+     D +V+ GKGHET 
Sbjct: 413 NPRTEDPAAIVNEVERGVLPVIGDKPYEKIVDRRTAIFHAIQRAQAGDTVVILGKGHETY 472

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ +G      D +  RE +
Sbjct: 473 QILKDGTIH-FDDREQAREAI 492


>gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 502

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 184/498 (36%), Positives = 271/498 (54%), Gaps = 19/498 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L+  L+  P Q    KI  +S +SR I+ G +F A+ G+  DG ++I  AI  GA  
Sbjct: 3   LSDLLKNLADIPDQAASIKIGGMSENSRAIKPGDMFAAVAGSSTDGRIYIKAAIDAGARV 62

Query: 71  IVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           I+      ++   A +   +TPI++V+N R  L+  A+R + K P  I AVTGT+GK+S 
Sbjct: 63  ILTD----MRPLEAPLDDLDTPIIMVENPRLVLAKAAARFWHKQPGMIAAVTGTNGKTST 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDN--------RLTTPSPIYLAKALSYLSSQG 181
             F++Q+  R    +  IG      +  +          +LTTP  + L  ALS L   G
Sbjct: 119 TDFLRQLWTRVTWQASSIGTLGVKGTDTRKMDGKILDLPKLTTPDSVSLHSALSPLCDAG 178

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           VTH+++EASSHGL Q RLDG+ +   +FTNL +DH+D+H   ++YF AK  LF +LL   
Sbjct: 179 VTHLALEASSHGLVQQRLDGLNIHIAAFTNLTQDHLDHHNDMESYFIAKSHLFMDLLMHA 238

Query: 242 SPAIIYADDAYSKEV----MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
             AII  DD Y + +      +       + + G+       ++K+  I N   +++  +
Sbjct: 239 GAAIINIDDPYGRRLCDMLTAQGDARQIVIQTFGFADDADFQIEKITPIDNILDMSVKHD 298

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK +     + G FQ  NAL A  +    G+     L  L  L   PGR + V  + +G 
Sbjct: 299 GKSWHIPLAMSGTFQAVNALTAGIMAYMSGLPLQDSLGGLAYLKPAPGRMQTVTGHPQGA 358

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +I VD+AHT ++L   L+ +R   S ++ V+FGCGGDRD  KR +MG IA D AD+ IVT
Sbjct: 359 QIVVDFAHTPDALRAALEALRPEVSHKLYVLFGCGGDRDPSKRALMGAIADDAADVVIVT 418

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IR+ I+   P  IE   R  AI+TA+E L + DVL++AGKGHETV ++ 
Sbjct: 419 DDNPRSEDPASIRSAIMAASPKSIEIFPRDTAIKTALEQLVEGDVLLIAGKGHETVQLIG 478

Query: 477 NGEKKMSVDCDIIREILG 494
           + E     D  +   I+ 
Sbjct: 479 D-ETLPFSDISVASRIIA 495


>gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 483

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 243/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       I  +   E +I  V+ DSR +QAG +F+A+ G + DGH++I
Sbjct: 1   MVLSELLKAIQP-------IQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI +GA A++        D     +     + V ++   +   A+  Y        ++
Sbjct: 54  PVAIEKGAVAVLCE------DVPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +V +E SSH +DQ R+ G++   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADSGCKYVFMEVSSHSIDQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +PK + ++   DD      +    N   +V +   +       K+   H +  +   ++ 
Sbjct: 227 MPKNAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGKILESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G F   N L   G  + +G     VL  L  L  V GRF+ V  + +G  
Sbjct: 281 NNHELAVHFIGRFNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAV-RSPKGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKEDMQKTISIADRREAIKTACLLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + + ++  
Sbjct: 460 NYQEIK-GVKHHFDDKEELNKVFN 482


>gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
 gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
          Length = 483

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 206/498 (41%), Positives = 280/498 (56%), Gaps = 25/498 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+ ++                  +I  +S+DSR I+ G+ F AI G+  DG  ++
Sbjct: 1   MRLTELLARN---------DLDPALAGIEIAGLSADSRAIREGFAFFAIPGHAGDGLSYV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A+GA  +V                + P++VVD+ R  L+  A+R + + P  I AV
Sbjct: 52  DDARARGARVVVAQRQSEC---------SLPLVVVDDVRAELAHAAARFHPRQPRVIAAV 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SV + ++QI    G  +  +G    + S  A    LTTP P+ L + L  L+ 
Sbjct: 103 TGTSGKTSVVASLRQIWTAMGHEAASLGTVGVVDSKGAHYGALTTPGPVELHRILDDLAG 162

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASS G+DQ RLDG++L    FTN  RDH+D+H+  + YF AKMRLF+ L  
Sbjct: 163 RGVTHLAMEASSLGIDQRRLDGVRLSVAGFTNFSRDHLDHHRDMEEYFAAKMRLFDTLSQ 222

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I AD   +  V       G  V  VG +G+ I +++  A      + +   G D
Sbjct: 223 PGRTAVIDADSDVAPRVAAVCEKRGLNVFGVGAKGEAIAVREARAHALATSLKLRHAGVD 282

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G FQ  NALVAAGL IA G D A V   L +L   PGR EF+G    G  ++
Sbjct: 283 YSVELPLAGAFQTSNALVAAGLAIAAGDDPARVFSALNELKGAPGRLEFIG-ERDGAPVF 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L  +R +T  R+IVVFGCGGDRD+GKRP+MG+IA   AD+AIVTDDN
Sbjct: 342 VDYAHKPDALEKVLATLRPLTKRRLIVVFGCGGDRDRGKRPLMGEIAARAADVAIVTDDN 401

Query: 420 PRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PRSED   IRA II G  G     IE  +R EAI  A+  L   DVLVVAGKGHET  IV
Sbjct: 402 PRSEDANAIRAAIIEGARGGGAEIIEIADRGEAISKAVADLRAGDVLVVAGKGHETGQIV 461

Query: 476 TNGEKKMSVDCDIIREIL 493
            +       D + I + L
Sbjct: 462 GD-RVLPFSDHEAIAQAL 478


>gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
 gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
          Length = 487

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 257/504 (50%), Gaps = 34/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++YK          +      E +I ++  DSR ++ G +FVA+ G + DGH F
Sbjct: 1   MKVLKDILYKV-------SLVSTTGDMEVQIQDIVFDSRKVKEGSVFVAVPGTQVDGHDF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +A+A GA+A++       +   + ++     + V N+ K + + A   +    E +  
Sbjct: 54  IDKALALGAKAVI------FEKLPSELQKGITYVQVVNSAKAMGIMAGNYFDNPSEKLKV 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           +AVTGT+GK++  + + Q+  R G S+  +      I+        TTP  + +   L  
Sbjct: 108 VAVTGTNGKTTTVTLLHQLFMRMGYSTGLLSTVENKINEEVIPATHTTPDSVSIQALLKQ 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G TH  +EASSH + Q R+ G+KL    FTN+  DH+DYH T   Y  AK +LF+E
Sbjct: 168 MLEAGCTHCFMEASSHAIVQERIAGLKLAGAVFTNISHDHLDYHLTFDEYIKAKKKLFDE 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK + A++  DD     +++    +     + G +       K+ + +  + + + + 
Sbjct: 228 L-PKAAFALVNGDDKRGMVMLQNCKGSHQ---TFGLKTPAEFKAKIIS-NTLEGLELDIN 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G      F + G F  YN L   G  + +G +   VL  L  +    GRF+ +     G 
Sbjct: 283 GT--LIWFMMIGAFNAYNLLGVLGTAVLLGEEEEEVLRELSGIKGARGRFDRISIG--GV 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +LK I  + +G  ++I + GCGG+RD+ KRPIM KIA+  +D  I
Sbjct: 339 TAIVDYAHTPDALDNVLKTINGVRTGVEQLITIVGCGGNRDKTKRPIMAKIAVQESDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP  I  ++  G     I   +   +R EAI+TA  + NK D++++AGKGH
Sbjct: 399 LTSDNPRFEDPMDILKDMQTGIGVSEIRKSLTIEDRKEAIKTACMLSNKGDIILIAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +I+ E L
Sbjct: 459 EDYQEIK-GVKHHFDDAEIVTEYL 481


>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa]
 gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/517 (30%), Positives = 262/517 (50%), Gaps = 43/517 (8%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      E +I  +  DSR + AG +FV  VG K DGHL++ +A  +G
Sbjct: 246 LAELLDESKVVPVSVLGDLEVEITGIQDDSRVVSAGDLFVCRVGMKTDGHLYLSEADKRG 305

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A A+V S    +++          +++V++T   L   A+  Y    +N  ++ +TGT+G
Sbjct: 306 AVAVVASKEVDIEE----TLGCKALVIVEDTNAVLPALAAAFYKFPSKNMAVIGITGTNG 361

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQ 180
           K++ A+ V+ + +  GL +   G  ST++ +       +   T P  I +   ++ +   
Sbjct: 362 KTTTANLVKGMYEAMGLRT---GMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHN 418

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
           G   V +EA+S GL   R D +      FTNL RDH+D+H T++ Y NAK +LF  ++ P
Sbjct: 419 GTEAVVMEATSQGLALGRCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDP 478

Query: 240 KESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +    ++  DD  +   + +          ++  +   +H  K      + QV ++    
Sbjct: 479 ERHRKVVNVDDPNAPFFIAQGNQEVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHG 538

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    L G+  +YN L A  + IA+G     ++  +E++  VPGR E +      G +
Sbjct: 539 ILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFG-V 597

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++L  +L ++R +   RII V GCGG+RD+GKRPIM KIA D +D+ I+T D
Sbjct: 598 IVDYAHTPDALSRLLDSVRELRPKRIITVIGCGGERDRGKRPIMTKIATDKSDMTILTSD 657

Query: 419 NPRSEDPEKIRAEIIHGI----PGFIEKGN------------------RIEAIRTAIEML 456
           NPR EDP  I  +++ G+      +++ G                   R  A+R A+ M 
Sbjct: 658 NPRGEDPLDILDDMLAGVGWSMQEYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMG 717

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + D++VVAGKGHET  I  + +K+   D +  RE L
Sbjct: 718 EEGDMVVVAGKGHETYQIEGD-KKEFFDDREECREAL 753


>gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 481

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/494 (31%), Positives = 243/494 (49%), Gaps = 25/494 (5%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +++  +     Q    R I+E+  DSR      +F+AI G   DGH ++  AI  GA
Sbjct: 2   ELKKILENVEYELQQGDINRDISEIIYDSRIKTRCGLFIAIKGYMSDGHKYVSNAIENGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
             IVVS A         + +N  ++ V +TR  ++  A   YG   + +  + VTGT+GK
Sbjct: 62  RVIVVSDAV-------FVAANIAVVRVKDTRAVMAAIAGNFYGHPSKELALVGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S    + +I +        IG     I     +   TTP  I L K    ++++ V   
Sbjct: 115 TSTTFLLAEILEAYRKKIGVIGTIENRIGKQVMETARTTPESIDLQKLFRKMNTEDVDVA 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L  +R+DG     G FTNL +DH+D+H+T   Y  AK +LF         +I
Sbjct: 175 IMEVSSHALVLNRVDGCDFDIGVFTNLTQDHLDFHETMDNYAAAKAKLFS----MCKISI 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I  D  YSK ++    +     ++ G +       K +    ++ Q  +   GKD   + 
Sbjct: 231 INVDSPYSKVMLD---SCKAETITYGIKNPATFFAKDIVIHAHETQYVLEYNGKDLQIVV 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PGEF VYN + A      +G+    +   L+ +  VPGR +    +++G  + VDYAH
Sbjct: 288 PIPGEFTVYNTMCAIICAYKLGVPLDFIAXALKNVKGVPGRVQSFQ-STKGYSVLVDYAH 346

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T + LE +L  I+    G I+ VFGCGGDRD  KRPIMG+IA   +    +T DNPRSE+
Sbjct: 347 TPDGLENVLTAIKQFAKGDIVTVFGCGGDRDNKKRPIMGEIASKYSTKVYITSDNPRSEE 406

Query: 425 PEKIRAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P++I  +I  G    I     + +R  AI  A+    K DV+++AGKGHET   + +G  
Sbjct: 407 PDEIIRQIEVGAKKHITPYEIESDRKTAIIKALSFAKKDDVILIAGKGHETYQHLKDGII 466

Query: 481 KMSVDCDIIREILG 494
               D +++ E L 
Sbjct: 467 H-FDDSEVVLEFLA 479


>gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 484

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/494 (30%), Positives = 243/494 (49%), Gaps = 26/494 (5%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E++N +    +Q   + +I+ +  DSR +  G +FVA+ G   DGH +I QAI  GA 
Sbjct: 4   LSEILNGIPATELQGADDMQISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDGAV 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           AIV        D  A        ++V ++   L   A+  Y    + +  + VTGT+GK+
Sbjct: 64  AIVCE------DLPAHTIGEVAFMMVADSAVALGQIAANFYDHPSDKLKLVGVTGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +VA+ + Q+    G     +      I+        TTP  + L   L+ + +QG  +  
Sbjct: 118 TVATLLYQLFHDLGYKCGLLSTVENQINGKVIPATHTTPDQVVLNSLLNDMVNQGCDYCF 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH + QHR++G++   G FTNL  DH+DYH+T   Y  AK   F+ L PK + A+ 
Sbjct: 178 MEVSSHAVAQHRIEGLQFSGGIFTNLTHDHLDYHKTFDNYLKAKKAFFDAL-PKSAFALT 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD     ++    N   +  +   +    +  K+        + + ++ ++  F    
Sbjct: 237 NIDDRNGNIML---QNTRAQRKTYALKSLADYKAKILENQFG-GLLLDIDNEEVWFKMV- 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F  YN L   G    +G D   VL  L KL    GRF+++ + ++   I  DYAHT 
Sbjct: 292 -GSFNAYNLLAVYGAARLLGQDKTKVLTSLSKLKGAEGRFDYIISPNKVIGIV-DYAHTP 349

Query: 367 NSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           ++++ +L  I  I  G  ++I + GCGGDRD+ KRPIM K+A   +D  I+T DNPRSE 
Sbjct: 350 DAVQNVLSTIHDIRKGTEKVITIIGCGGDRDKTKRPIMAKVACQWSDKVILTSDNPRSEV 409

Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PE+I  ++  G+        I   +R EAI+TA  + +  D++++AGKGHE    V  G 
Sbjct: 410 PEQIIRDMEAGVDAEGKKKTISITDRHEAIKTACHLASPGDIILLAGKGHEKYQEVK-GV 468

Query: 480 KKMSVDCDIIREIL 493
           +    D + + +  
Sbjct: 469 RSHFDDKEELIKAF 482


>gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
 gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
          Length = 493

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/499 (32%), Positives = 248/499 (49%), Gaps = 29/499 (5%)

Query: 12  PELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            +LIN L    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  + QAI +GA
Sbjct: 4   SQLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + IV S    +         N P++ V+NT + +++ A   YG   + +  + VTGT+GK
Sbjct: 64  KIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++V   ++QI +    ++  IG     I         TTP  I   + L+ +   GV  V
Sbjct: 115 TTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----- 240
           ++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L  K     
Sbjct: 175 AMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADG 234

Query: 241 -ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGK 298
               A++  DD   +E  +        VL+ G +   + + + V    +  +  +SV G 
Sbjct: 235 TNKVAVLNTDDPVGREFEQYTA---AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGH 291

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G+F VYN L A     A GI    +++ LEK+  V GRF+ V +++ G  +
Sbjct: 292 VTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVPSHT-GVSV 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ +   I T D
Sbjct: 351 IVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHSTKPIFTSD 410

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGHE   I+ 
Sbjct: 411 NPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGHEDYQIIG 470

Query: 477 NGEKKMSVDCDIIREILGL 495
              K    D +   + L L
Sbjct: 471 R-TKHHFDDSEEAAKALAL 488


>gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 497

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/480 (34%), Positives = 241/480 (50%), Gaps = 27/480 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I +V  DSR +  G +FVA+ G   DGH F P+A+ +GA A+VV              +
Sbjct: 20  EITDVVYDSRQVTPGALFVALPGRNVDGHDFAPEAVQRGAAALVVER-------PVAAPA 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +  ++  D+TR  L   A+  +        ++ VTGT+GK++    V+ + +R G     
Sbjct: 73  HVAVIRTDSTRAALGRLAAEFWRHPSRRMRVVGVTGTNGKTTTTHLVKAVLERQGHVVGL 132

Query: 147 IGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            G   T+     +   LTTP    L +    ++  G T+  +EASS GLD +R+D ++  
Sbjct: 133 TGTVHTLMPGERRPAGLTTPEASDLQRLFHQMAEAGCTYAVMEASSQGLDMNRVDDVEFD 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVMKRAH 261
            G FTNL +DH+DYH T  AY  AK +LF  L          A++ ADD  S+       
Sbjct: 193 LGIFTNLTQDHLDYHGTFGAYREAKAKLFRLLSRPGYKPRKAAVLNADDPASEYYRSVTE 252

Query: 262 NAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                V + G++   +     V       ++ +     +      L G F VYNAL AA 
Sbjct: 253 ---VPVYTYGFRPDAMVRAADVELSPAGTRLRLCTPQGEVPVSLRLVGRFNVYNALAAAA 309

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A GI   ++ + LE    VPGR + V    +   ++VDYAH+ +SLE +L   R  T
Sbjct: 310 AGVAEGIALDVIRDALEAEEGVPGRLQPV-RAGQPFGVFVDYAHSPDSLENVLHTARGFT 368

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            GR+IVVFGCGGDRD  KRP+MG+IA  LA   IVT DNPRSEDP +I  +I  G+    
Sbjct: 369 RGRLIVVFGCGGDRDPTKRPVMGRIAGCLAHHTIVTSDNPRSEDPVRIVQQIESGLVDGL 428

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                +    +R EAIR A+ M    DV+V+AGKGHET  I  +       D  + R ++
Sbjct: 429 LPGHTYEVVIDREEAIRRAVTMAEPDDVIVIAGKGHETYQIFKDRTIP-FDDRAVARSLI 487


>gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M0579]
 gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240149]
 gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 492

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 233/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ LEK+    GR + +  NS  
Sbjct: 290 PWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 487

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/501 (30%), Positives = 250/501 (49%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   E +       +      I  +  DSR +    +FVA+ G + DGH +I +
Sbjct: 4   LKDILYKVTLETV-------VGNTAVAITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+ QGA AI+        +    I +    + V +T   L+  AS  YG       ++ +
Sbjct: 57  AVNQGALAIICE------ELPEQIVNGITYVKVADTSSALATIASNFYGNPSANLKLIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++AS + Q+ Q++G  +  +      +         TTP  + + K L+ +S 
Sbjct: 111 TGTNGKTTIASLLYQLFQKAGYKTGLLSTVKILVDKTEYKATHTTPDSLTINKYLAEMSE 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV +  +E SSHG+ Q R +G++   G FTNL  DH+DYH T   Y + K + F+EL P
Sbjct: 171 AGVEYCFMEVSSHGIHQKRTEGLRFEGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDEL-P 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K + A++  DD     ++    N   + ++   +    +  ++          + ++ +D
Sbjct: 230 KTAFALVNTDDKNGAVMV---QNTKAKKVTYALKSYADYKAQILENQLSG---LLLKIQD 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F  YN L        +G+D    L+ L +L  V GRF++  +        
Sbjct: 284 QEVWVKLIGSFNAYNLLAIFATAELLGLDQIEALKLLSELESVSGRFQYFISEGN-VTAI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I  I +    +I V G GGDRD  KRP MG IA  L+   I+T 
Sbjct: 343 VDYAHTPDALKNVLETINDIRTKNEELITVVGAGGDRDTTKRPKMGHIASALSTKTIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPRSE PE I  ++  G+        +   +R +AI+TA ++ N  D++++AGKGHET 
Sbjct: 403 DNPRSEKPEAIIEQVEAGVEPINYKKILSITDRKQAIKTACQLANPGDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +  GE+    D  I++E L
Sbjct: 463 QEIM-GERFDFDDYKIVQETL 482


>gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           RCH1]
          Length = 486

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/471 (34%), Positives = 242/471 (51%), Gaps = 15/471 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +DSR +  G +FVA+ G   DG  FI QA+AQGA  +V   A  LQ       +   
Sbjct: 21  QIRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVC-RADGLQHLPEAAFA--- 76

Query: 92  ILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + V D+ R  L       YG    P  ++ VTGT+GK+++   ++ +   +G     +G 
Sbjct: 77  VAVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGT 136

Query: 150 TSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            S       +    TTP  + L + L  ++  GV    +E SSH LDQ R+ GI+     
Sbjct: 137 VSYRWPGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAV 196

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL +DH+DYH   + YFNAK RLF EL        + ADD + + ++     A    L
Sbjct: 197 LTNLTQDHLDYHGDMETYFNAKARLFRELPEVGKHCAVNADDPWGRRLLADLPGAVGFAL 256

Query: 269 SVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +       + +H + +        + +  EG+ ++   PL G     N L    + + +G
Sbjct: 257 TGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLG 316

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +  A  + HLE    VPGR E + TN RG  ++VDYAHT ++L  +L+ +R +   RI+ 
Sbjct: 317 LSPADFV-HLENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRIVT 374

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KG 443
           VFGCGG+RD+ KRP+MG      AD+A++T DNPR EDP  I  ++  G+ G  E   + 
Sbjct: 375 VFGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVAEA 434

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +R +AI  A+EML   D L+VAGKGHE    V +  K    D   IREILG
Sbjct: 435 DRRKAIALALEMLRPGDALLVAGKGHEDYQQVGD-RKLPFSDQQTIREILG 484


>gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M13399]
          Length = 492

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKFWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFRT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
 gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
          Length = 487

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/504 (31%), Positives = 255/504 (50%), Gaps = 33/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++YK   E +   +          + E+  DSR +Q   +F+AI G + DGH +
Sbjct: 1   MKTLKDILYKVHIEAVTGDTTIA-------VRELVFDSRKVQLNDVFIAIKGYEVDGHSY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I +AI  GA A++        +    I +    + VDN    L++ AS  YG   E   +
Sbjct: 54  IEKAIKAGAIAVICE------EIPKNIINGITYVQVDNGSSALAVMASNYYGNPSENLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ + Q+ +++G     +      +         TTP  + +   L  
Sbjct: 108 IGVTGTNGKTTIATLLYQLFKKAGYKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQK 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +GV +  +E SSHG+ Q R  G+    G FTNL  DH+DYH T   Y + K + F+E
Sbjct: 168 MNHEGVEYCFMEVSSHGIHQKRTAGLVFQGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDE 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PKE+  ++  DD     +M    N   +  +   +    +  ++          + ++
Sbjct: 228 L-PKEAFCLVNIDDKNGLVMM---QNTKAKKYTYALKTYADYRAQILENRLAG---LLLK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D +    L G F  YN L        +G++   +L  + +L  V GRFE+  + ++  
Sbjct: 281 INDNEVWTKLIGSFNAYNLLSIYATAELLGLEEIEILRLISELESVSGRFEYFISKNK-I 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L+ I  I +G  ++I V GCGGDRD  KRP MG IA  L+  AI
Sbjct: 340 TTIVDYAHTPDALKNVLETINNIRTGNEQLITVVGCGGDRDTTKRPKMGNIASTLSTKAI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPRSEDP  I   I  G+        +   +R +AI+TA +M N+ D++++AGKGH
Sbjct: 400 FTSDNPRSEDPMTIIEAIEKGVEPQNYKKTLSITDRKQAIKTACQMANENDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + NG++    D  I +EIL
Sbjct: 460 ETYQEI-NGKRSDFDDYKIAKEIL 482


>gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
 gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 485

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/498 (41%), Positives = 282/498 (56%), Gaps = 23/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D        +       E  +  +++DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MKLRELFGDD--------ATMDAPAGELAVTGLAADSRAVKPGDLFFALAGSKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A+    A +        R   P +   N R+ L+L A++ Y + P  I AV
Sbjct: 53  DAAIASGAVAVAGDHAPA--------RGRVPFIATPNPRRALALAAAKFYPRQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G  S  IG    ++ S A    +TTP PI L + L  L+ 
Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGYLSASIGTVGVVAPSRAVYGSVTTPDPIELHRELDQLAG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ+R+DG+++ A  FTNL RDH+DYH T   Y   K+RLF +L+ 
Sbjct: 165 EGVTHLALEASSHGLDQYRVDGVRVRAAGFTNLSRDHMDYHPTVAHYLETKLRLFRDLVE 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295
            +  A+I AD   S  V++ A      V+ VG +G      I L +       Q+VT+  
Sbjct: 225 SDGIAVICADHDCSDTVIEAAGARNVPVMRVGRRGDGARMGIRLVEAAIDGFAQRVTLEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++     PL GEFQ+ NALV+AGL I  G D       LE L    GR E +G    G
Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGGDVDQAFAALEHLEGARGRIERIG-ERNG 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA D AD+ IV
Sbjct: 344 AQVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA I+   PG  E G+R EAI TAI  L   D L++AGKGHET  IV
Sbjct: 404 TDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIGTAIAGLQSGDALLIAGKGHETGQIV 463

Query: 476 TNGEKKMSVDCDIIREIL 493
            +       D +     L
Sbjct: 464 GD-RVLPFSDHEAASAAL 480


>gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
 gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
          Length = 480

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 196/484 (40%), Positives = 270/484 (55%), Gaps = 12/484 (2%)

Query: 14  LINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           LI  L   P      +  ++  + D+R +  G +F A  G + +G  FIP A+  GA A+
Sbjct: 6   LIEGLDAKPDAGASLDVPVSGFAIDNRKVAPGTVFGAFQGARVNGEDFIPAAVQAGATAV 65

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V      ++            +  DN R+  +  A+R +   PE  +AVTGT+GK+S   
Sbjct: 66  VARPEARVE--------GAIHIASDNPRRLFAQLAARYFAPFPEVTVAVTGTNGKTSTVE 117

Query: 132 FVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +Q+ +  G  S  IG    T S       LTTP  +     +S L  +G+TH + EAS
Sbjct: 118 LTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEAS 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL Q+R +G+ + A +FTNL RDH+DYH    +YF AKMRLF+E++  +  A+++ADD
Sbjct: 178 SHGLAQYRTEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDEVVAPQGAAVVWADD 237

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +S +V++RA   G RVLSVG QG+ + L         Q + I VEGK++    PL G +
Sbjct: 238 EWSDKVIQRATKRGLRVLSVGVQGQALRLANRTPTQLGQTLDIEVEGKNYKVNLPLIGAY 297

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q  NAL AAGL IA G D+  VLE L ++  V GR E       G  +YVDYAHT + L 
Sbjct: 298 QAANALTAAGLAIAGGEDAGKVLELLGRVQPVRGRLERAVITKAGAPVYVDYAHTPDGLR 357

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             ++ +R  T GR+I +FG GGDRD GKRP MGK+A DLAD  IVTDDNPRSE+P  IRA
Sbjct: 358 AAIEALRPHTRGRLIALFGAGGDRDAGKRPQMGKVAADLADHVIVTDDNPRSEEPSAIRA 417

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            ++ G PG  E G R  AI  AI      D++++AGKGHE   I+ +       D  + R
Sbjct: 418 AVMAGAPGAEEIGGRRAAIAAAIAQAGADDIVLLAGKGHEQGQIIGD-RVLPFDDVTVAR 476

Query: 491 EILG 494
           E  G
Sbjct: 477 ECAG 480


>gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
 gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
          Length = 485

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 176/502 (35%), Positives = 260/502 (51%), Gaps = 33/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL        P L+  + +      + ++  +++DSR ++ G++F A+ G K +G+ F 
Sbjct: 1   MKL--------PHLLKGVPLLCGGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+ +GA A+V  S    +  SA      P+L+V+N+RK L+  A+ LYG   +   IL
Sbjct: 53  EEALKKGASAVVTDSRKWFEKLSAA---GKPVLLVENSRKALATAAANLYGNPQKELKIL 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    + +   R G+ +  IG  S  S      +  TTPS + L K L  L
Sbjct: 110 GVTGTNGKTTTTFLLFKALNRLGVKAGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKEL 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G   V  E SSHGL QHR+ GI+     FTNL  +H+DYH   + YF AK +LF   
Sbjct: 170 KNRGCEFVVCEVSSHGLHQHRVHGIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLFR-- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 +++  DD Y   +       G + ++ G + +      + AI  +  V I    
Sbjct: 228 --LSKLSVVNRDDPYGTTLSALRAVNGGKTVTYGKKSRNY---TIEAIDPEGSVLIGTPK 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L GEF  YN   A  L   +G +   + E  + +  VPGR E V        
Sbjct: 283 GAVKVKHNLKGEFNGYNVTAAFSLLSELGFEPLNLKEAFKNVK-VPGRMEEVVPG----- 336

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           ++VDYAHT ++L+  L  ++   SGR+IVVFGCGGDRD+ KRP+MGKIA  LAD  IVT 
Sbjct: 337 VFVDYAHTPDALQKALNALKKACSGRLIVVFGCGGDRDRTKRPVMGKIAATLADSVIVTS 396

Query: 418 DNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPRSE PE+I  E++ GIP         + +R  AI  A+    + D L++AGKGHE  
Sbjct: 397 DNPRSEPPEQIAKEVVAGIPEELRGKVTVELDRKRAIELALRGKGQADYLLIAGKGHENY 456

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             V  G+K    D + +RE+ G
Sbjct: 457 QEVA-GKKLPFSDQETVRELYG 477


>gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M04-240196]
          Length = 492

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKFWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFRT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ LEK+    GR + +  NS  
Sbjct: 290 PWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|253689958|ref|YP_003019148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756536|gb|ACT14612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 495

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/495 (34%), Positives = 252/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R + E++ DSR   AG +FVAIVG+K DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVQDTPARALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           V  +     D +       P++ + N  + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  VAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +   A     TT S + + + LS L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A  FTNL RDH+DYH   ++Y  AK  LF +   +    II A
Sbjct: 184 VSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFAD--HRVGQMIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD      + +  +A    +      G +G+++   ++    N   +         +   
Sbjct: 242 DDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +++G     ++    +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNMLLALATLLSLGYPLDKLVIAGAQLQPVCGRMEVFHAEGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV++VAGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 481 YS-DRITVARLLGVI 494


>gi|270263954|ref|ZP_06192222.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
 gi|270042147|gb|EFA15243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
          Length = 471

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 244/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +    +D + T     P+
Sbjct: 1   MTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAEDGAITEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  E   ++ VTGT+GK++    + Q  Q  G +   +G  
Sbjct: 61  IYLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETGAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  +G T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVCPTENTTGSAVDVQHVLNELVDRGATFAAMEVSSHGLVQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH     Y  AK  LF     +   AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMANYEAAKWSLFAG--HEVGQAIINADDEVGQRWLSKLPDAVAVTMQ 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L +G  G+++    V    N   V  S    D +    L G F V N L+A    +++
Sbjct: 239 DNLQLGCHGRWLKTTAVSYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     ++E   +L  V GR E      +   + VDYAHT ++LE  L+  R    G++ 
Sbjct: 299 GYPLDKLVETGNQLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALEAARLHCQGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPR+E+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLDAGRALVI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    +QDV++VAGKGHE   +V N     S D   +  +LG+I
Sbjct: 418 HGRAEAVTSAIMQAKEQDVVLVAGKGHEDYQLVGNRRLDYS-DRTTVARLLGVI 470


>gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 510

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/509 (32%), Positives = 259/509 (50%), Gaps = 31/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+        EL++  S F +   + +++ VS DSR I+  + F ++ G+  DG  +I
Sbjct: 1   MKLR--------ELLSDESAFVIGDEDTEVSGVSYDSRKIEKDYAFFSLPGHNTDGRKYI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AIA GA  I+  S Y   D           +V+ +  +F+SLF ++ Y       NI+
Sbjct: 53  AEAIANGASVIITDSKYDTND--------VAQVVIKDIFRFMSLFGAKFYNYPDRELNIM 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V   ++ I   SG+    IG  +        +   TTP  + + + +  +
Sbjct: 105 GITGTNGKTTVTYMIESILANSGIECGVIGTVNYRYKGKVIEANNTTPQSLDIYRIMRDI 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S+ G+ ++ +E SSH L   R+ GI+     FTNL R+H+D+H+    YF AK  LF+EL
Sbjct: 165 SNNGIKYLVMEVSSHALSLGRVYGIEFDTAVFTNLTREHLDFHKNMDRYFEAKSALFKEL 224

Query: 238 ----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVT 292
                  +  AII  DD Y ++++K   +A  ++ S +           +   +      
Sbjct: 225 GAGKKNNKKCAIINVDDEYGRKLLKVGISAEIKLYSAIEKNAADFKASNIKVTNKGAVFN 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    K         G   VYNAL A    +   I     +E L     VPGR E V T 
Sbjct: 285 LVFCNKRARIRIKHIGVHNVYNALAALAAAVCSEISFENAVEGLNNSSRVPGRLEKVNTI 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I VDYAHT ++LE +L+ ++ +   RII+VFGCGGDRD+ KRP+MGKIA++++D 
Sbjct: 345 GLGFEIVVDYAHTDDALESVLRALKDLNPKRIIIVFGCGGDRDRAKRPLMGKIAVEMSDF 404

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEM-LNKQDVLVVAG 466
             VT DNPR+EDP +I  +I  GI       +    +R  AI+  I M  +K D++++AG
Sbjct: 405 VFVTSDNPRTEDPYQIILDIEVGIKRAGKKNYKVVVDREAAIKEVIMMAADKGDIILLAG 464

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHET  I + G K    D  I  + + L
Sbjct: 465 KGHETYQITSGG-KVHFNDVKIAEKYIDL 492


>gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 499

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 171/496 (34%), Positives = 248/496 (50%), Gaps = 21/496 (4%)

Query: 10  DFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +F +LIN L++       +  +  ++ DSR  Q G++FVAI G   DGH F+P A+ +GA
Sbjct: 2   NFRDLINHLNVLEHSPVLDVPVTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTRGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            A+++            +       VV +TRK L+L ASR YG+      ++ VTGT+GK
Sbjct: 62  AAVLLQQKVP-------VPEGVAWAVVPDTRKGLALAASRFYGEPGRALRLVGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    +  + +        IG     I       R TTP  + L + L  ++  GVT V
Sbjct: 115 TTTTHLIAALFRARRPGVGLIGTIHNLIGDEVVPVRHTTPESLDLQRLLRRMADAGVTDV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L   R+ G+   A  FTNL +DH+D+H   + YF AK +LF  L  +E+ AI
Sbjct: 175 VLEVSSHALRLSRVHGLSFEAAVFTNLTQDHLDFHTDFEDYFAAKAQLFTGL-GEEAAAI 233

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DD Y   ++       CR+    +Q   +    V  +    +  +  E         
Sbjct: 234 INRDDPYGVRLLDLTRG--CRITYAVHQAADVRAAGVRPVPGGVEFLLESEWGSAPVALR 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F VYNAL AA + +  G     +   L ++  VPGRFE V    +   + +DYAHT
Sbjct: 292 LSGLFNVYNALAAACVGLVRGFTPEEIAGVLGRVRGVPGRFERVD-QGQEYTVIIDYAHT 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE +L+  R I  GR+I VFGCGGDRD+ KRP+MG I+   AD +++T DNPR+EDP
Sbjct: 351 PDGLENLLRAAREIAPGRLISVFGCGGDRDRTKRPLMGAISARGADYSVLTSDNPRTEDP 410

Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             I  +I  G       G+    +R EAIR A E     DV+++AGKGHE   I+     
Sbjct: 411 LAIIMDIEEGYRRVRPDGYAVVPDRREAIRHAFERARPGDVVIIAGKGHEDYQIIGTKRL 470

Query: 481 KMSVDCDIIREILGLI 496
           K   D      IL  +
Sbjct: 471 K-FDDRREAAAILAAM 485


>gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae MS11]
 gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
          Length = 492

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   + P L+   +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNIPPLLCANAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+  GA  +          F+       P   + N +    + A+++Y    +   +  
Sbjct: 55  AAVVNGAAFVFWDDDG---KFAWNPEWKVPNQGIKNLKHRAGMLAAQVYDNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELIGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis N1568]
          Length = 492

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELVCRLKKDCPDLAVYSYGFSEQADIRIIDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M01-240355]
          Length = 492

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKFWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
 gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
          Length = 489

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 178/477 (37%), Positives = 269/477 (56%), Gaps = 3/477 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +   + R+ ++  ++ DSR ++ G +F A+ G+   G  FI  A+ QGA AI+  
Sbjct: 3   LSLLGLRGDKGRDPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTD 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +    +  + ++  ++V ++ R  L+  A+  +   PE ++AVTGTSGK+SVASF +
Sbjct: 63  RKGAEIAAAELVGADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTR 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI Q  G  +  +G       +      TTP PI L + L+  ++ GVTH ++EASSHGL
Sbjct: 123 QIWQALGHKAISLGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGL 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L AG+FTN  +DH+DYH+    YF AK  LF+ +L + + A+I  DD   +
Sbjct: 183 DQRRLDGVRLKAGAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGR 242

Query: 255 EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++ + A   G ++ ++G   +  + +         Q +     G+       L G FQ  
Sbjct: 243 QMAQIAGERGLKLTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAE 302

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L AAGL IA G ++  V+E L  L  V GR E       G  ++VDY+H   +L   L
Sbjct: 303 NVLAAAGLAIAAGDEAPRVIETLPGLTTVRGRMELAAVRENGAAVFVDYSHKPGALASAL 362

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +++R    GRI+VVFG GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IRAE++
Sbjct: 363 QSLRPHVMGRIVVVFGAGGDRDRLKRPLMGEAARQFADVVYVTDDNPRSEDPAAIRAEVM 422

Query: 434 HGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G  P  IE G+R EAI   ++ L   D L++AGKGHET  I+ + +     D +  
Sbjct: 423 AGAGPDAIEVGDRAEAILRGVDALQPGDALLIAGKGHETGQIIGS-DVYPFDDAEQA 478


>gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
          Length = 499

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/506 (31%), Positives = 247/506 (48%), Gaps = 26/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DLI      L++ L     +   ++++ +++DSR    G  + A+ G   DGH FI
Sbjct: 2   MTLEDLIG-----LLDPLEYLAGRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+++G   +V        +   ++      + V + R  L+  A+  +G       ++
Sbjct: 57  SDALSKGVGVVVCE------EIPVSVDERCCYIRVADCRTALAAAAAEWFGHPASSLRVI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A  ++ +  RSG+ +  IG   + I   +     TTP  + L      +
Sbjct: 111 GVTGTNGKTTTARLIRTMLDRSGVKTGYIGTGQALIGDESIVLERTTPEAMDLHALFRKM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G   V +E SSH L  HR +GI      FTNL  +H+D+H T   Y +AK  LF ++
Sbjct: 171 VNCGCEAVVMEVSSHALVLHRTEGISFYGAVFTNLTPEHLDFHATMDEYGSAKQILFRQV 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLKKVCAIHNKQQV 291
            P +   I+ ADDA+   +      +     +VG Q      G  +  + + A  +   V
Sbjct: 231 AP-DGFGIVNADDAWGSMMAGAFSGSRLFCCTVGSQVFGCTNGSVVRARDIEARMDGSSV 289

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+ + G+     F LPG F V N L      +A+G+        +  +  V GR E V  
Sbjct: 290 TVQMNGRACRASFLLPGLFNVMNMLEILSAGVAMGLSLETAAASVADVVSVEGRMEPVSD 349

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDL 409
           +       VDYAHT ++LE ++  +  +      +IVVFGCGGDRD+ KRP+MG IA   
Sbjct: 350 DGGLFSAIVDYAHTPDALEKVIGALNEVRPADSSLIVVFGCGGDRDRSKRPLMGGIAAAG 409

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  I+T DNPRSEDPE+I   I  GI    F+   +R +AI   ++ML   D+L++AGK
Sbjct: 410 ADHVILTSDNPRSEDPEEILDAIASGITEGSFMRIADRADAIVCGVQMLRPGDLLLIAGK 469

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE     + G K    D +++   L
Sbjct: 470 GHECYQE-SGGRKSYFSDREVVARAL 494


>gi|188532897|ref|YP_001906694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
 gi|188027939|emb|CAO95796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
          Length = 495

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/503 (33%), Positives = 246/503 (48%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+DL+    P              ER + E++ DSR   +G +FVAI G+  DG  FIP
Sbjct: 5   KLRDLLAPWVP-----------GAPERALREMTLDSRVAASGDLFVAIKGHAADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  A++  +    +D         P++ +    + LS  A R Y +  E   ++ 
Sbjct: 54  QAIAQGVAAVIAEAEGEAEDGQIVETHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +   +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G +  ++E SSHGL QHR+  +   A +FTNL RDH+DYH     Y  AK  LF E  
Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   AII ADD   +  +++  +A        L  G  G+++   KV       +V  S
Sbjct: 232 HQVGQAIINADDKVGRRWLEKLPDAVAVTMENHLQPGCHGRWLKATKVDYHDGGARVHFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + D    L G F V N LVA    +++    A +     +L  V GR E      +
Sbjct: 292 SSWGEGDIDSRLMGAFNVSNLLVALATLLSLDYPLAALTATASQLQPVTGRMEVFSAPGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 352 -PTVVVDYAHTPDALEKALTAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQCADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPRSEDP  I ++I+ G+           R +A+   +    + D+++VAGKGHE 
Sbjct: 411 ITDDNPRSEDPAAIVSDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ +     S D D +  +LG
Sbjct: 471 YQIIGHQRFDYS-DRDTVARLLG 492


>gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 494

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 244/481 (50%), Gaps = 8/481 (1%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + I    W +  +  +  DSR ++ G  F+AI+G+  DG ++I +AI  GA A++  +  
Sbjct: 15  VDISSYSWSKIGVKHLELDSRKVEVGSTFIAILGHNVDGRVYINEAIKSGANAVIAQACP 74

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                   +R N PI+ VD+    LS  A R++      ++AVTGT+GK+++   + Q  
Sbjct: 75  LNTHGKTEVRDNVPIVFVDDLGIHLSSLAKRIFPLKNNKLIAVTGTNGKTTITQLIAQWF 134

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +     +  +G T        +    TT + I + + L  L  QG  + ++E SSHGL Q
Sbjct: 135 ELVSCHAAVLGTTGNGFIDDLKPATNTTGNAIEVQQTLHALEQQGAKYTALEVSSHGLSQ 194

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  ++   G F+NL RDH+DYH T + Y  AK  LF +       AII  DD   K  
Sbjct: 195 GRVKALEFEVGIFSNLSRDHLDYHGTMENYEQAKFSLFNQ--HCCKQAIINIDDPVGKRW 252

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +    +A    L      + +  K V    N   +       D +    L G F   N L
Sbjct: 253 LGYLDSAVAVSLHPQDFPRSVWAKCVNYSVNGISLAFDGMFGDGEIEVALIGGFNANNVL 312

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A    + +G+D   ++     L  V GR E   T S+  ++ VDYAHT ++LE  L  +
Sbjct: 313 IAMTTLLCMGVDKKQLIATAPLLRPVIGRMELF-TASKQAKVIVDYAHTPDALEKALHAL 371

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +  + G + V+FGCGGDRD GKRP+MG+I+ +LAD  I+TDDNPRSEDP  I  +I  G+
Sbjct: 372 KDHSGGALWVIFGCGGDRDVGKRPMMGRISEELADRVIITDDNPRSEDPTLIVKDIQAGM 431

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 + + +R  A++ AIE    +D++++AGKGHE   ++++       D +   E+L
Sbjct: 432 SRPESVMVEHDRRAALKYAIEHSRPEDIILMAGKGHEDYQVLSD-RIIACSDREFALELL 490

Query: 494 G 494
           G
Sbjct: 491 G 491


>gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M6190]
 gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis ES14902]
          Length = 492

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKFWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|238760092|ref|ZP_04621242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
 gi|238701711|gb|EEP94278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/474 (33%), Positives = 235/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDVFVAVVGHQTDGRRYIPQAIAQGVAAVIADAEGVAPDASMVEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +  +   ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSTLAGQFYHQPGDALRLVGVTGTNGKTTTTQLLAQWSQALGDTSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINADDEVGRRWLSQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G++G ++    V    N   +              L G F V N LVA    +++
Sbjct: 239 GNVPTGWKGPWLFASDVQYHDNGASIAFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIIADILSGLLDAGHAQAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    + DV+++AGKGHE   +V N     S D   +  +L ++
Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYS-DRVTVARLLEVV 470


>gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
 gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
          Length = 488

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/494 (33%), Positives = 252/494 (51%), Gaps = 16/494 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I K   EL+ + +          ++ +S DSR +  G +FVA  G K  G  FI  A+A 
Sbjct: 4   ISKTLAELLPEWAEPTHSG--IAVSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVAD 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A+++ S+    + S     + P++ + +    +   A+R Y +      ++ +TGT+
Sbjct: 62  GAVAVLIDSS----ELSDCPNVDVPVIGISDLVSEIGPVAARFYEQPSRAMTVVGITGTN 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S A FV Q     G+ +  +G          +    TTP  I L K  + L + G  
Sbjct: 118 GKTSCAHFVAQAMNNIGVKTAIVGTVGNGFPGLLEKATHTTPDAIGLQKLFAELKAAGAE 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L+Q R+  +    G FTNL RDH+DYH + +AY  AK RLF+E       
Sbjct: 178 AVVMEVSSHALEQGRVAAVDFDYGLFTNLSRDHLDYHGSMEAYGEAKARLFKEF--NLKA 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I  DD++ ++++ R  +   R +SVG      H        +  +  +     +F F 
Sbjct: 236 ALINGDDSFGRKLL-RDESIEARKVSVGRLFGQYHFAAYRLALHGIEAELKTPAGNFAFA 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GEF + N L+ A L    G   A V+E L +L  VPGR + V    +   + +DYA
Sbjct: 295 SKIIGEFNLDNLLLVAALLSEQGFSKAQVMESLSQLDSVPGRMQAVVAADK-PLVIIDYA 353

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L  +R  T+G +  VFGCGGDRD GKR +MG+IA  LAD  +VT DNPR+E
Sbjct: 354 HTPDALEKALSAVRAHTTGTLWCVFGCGGDRDAGKRELMGRIADQLADHLVVTSDNPRTE 413

Query: 424 DPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            PE+I   I  GI       + +R  AIR AI   + +DV+++AGKGHE    V   ++ 
Sbjct: 414 SPERIIEMIEQGICQHEPAIEADRAAAIRLAIMQASPEDVVLIAGKGHEDYQEVGT-KRY 472

Query: 482 MSVDCDIIREILGL 495
              D ++   +LG+
Sbjct: 473 PFSDLEVSMRLLGV 486


>gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis Z2491]
 gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           Z2491]
 gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240013]
          Length = 492

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 230/501 (45%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKFWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEQADIRIIDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
 gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
          Length = 514

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 165/519 (31%), Positives = 249/519 (47%), Gaps = 34/519 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+          L  +        ++E+  DSR +  G +F+A+VG++ DG  +I 
Sbjct: 5   NLRDLLAPYL------LDPYKQDVPSLPLSEMVLDSRLVAKGDVFIALVGHQTDGRHYIS 58

Query: 62  QAIAQGAEAIVVSSAYSLQ-------------DFSATIRSNTPILVVDNTRKFLSLFASR 108
           QAIAQGA A++  +                  +   T     PI+ +++  + LS  A +
Sbjct: 59  QAIAQGATAVIAEAQGQSAPSIPTQQRGGFKGEGYITTIQGVPIVYLNHLNQHLSKLAGQ 118

Query: 109 LYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTT 164
            Y +      ++ VTGT+GK+++   + Q  Q  G  S  +G      +         TT
Sbjct: 119 FYHQPGARLKLVGVTGTNGKTTLTQLLAQWSQALGNISAVMGTLGNGLLQQSLIATENTT 178

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH    
Sbjct: 179 GSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGDMA 238

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLK 280
            Y  AK +LF     KE    I ADD   +  + +  +A        +   ++G+++  K
Sbjct: 239 RYEAAKWQLFSTHHAKEKI--INADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLETK 296

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +        +       +   +  L G F V N L+A    +A+      ++  + +L 
Sbjct: 297 NINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATVSQLQ 356

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+GKR 
Sbjct: 357 AVCGRMEVFNALDR-PTVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDKGKRA 415

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLN 457
           +MG IA   AD  +VTDDNPR+EDP  I A+I+ G   I   +   NR EAI + +    
Sbjct: 416 LMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGLVEIRHAVVIHNRAEAINSVVMQAK 475

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +QDV+VVAGKGHE   +V N  +    D  I+ ++LG I
Sbjct: 476 EQDVVVVAGKGHEDYQLVGN-RRLTFSDRHIVAQLLGAI 513


>gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
 gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
          Length = 487

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/512 (31%), Positives = 253/512 (49%), Gaps = 45/512 (8%)

Query: 1   MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+ K  P E    L+I         IN V+ DSR ++ G +FVA+ G + DGH F
Sbjct: 2   MKLSDLLQKISPLETRGSLTI--------DINGVNMDSRLVEKGNLFVAVKGTQTDGHAF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I  AI +GA AI+VS         A   ++   + V +T   +   A+  YG   +   +
Sbjct: 54  IAGAIEKGASAILVSEPI-----PAETPTDVTFVRVADTEDAIGKVATTFYGDPTQRLKL 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  +    G            I + A     TTP P+ L K L  
Sbjct: 109 VGVTGTNGKTTIATVLYHLFTELGFKCGLCSTVCNYIGTHAVPTEHTTPDPVTLNKLLGE 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+      FTNL RDH+DYH+T + Y +AK   F+ 
Sbjct: 169 MADEGCEYAFMECSSHAIHQKRIGGLDFAGALFTNLTRDHLDYHKTFENYRDAKKAFFDG 228

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L  K++ AI  ADD     ++    N   R+ +   +    +  K+     +  + + + 
Sbjct: 229 L-SKQAFAITNADDKNGPIMV---QNTKARIKTYSTRAAADYKGKILEESLEGML-LEIN 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G++        G F V N L   G  I +G+     L  L  LH V GRFE +  + +G 
Sbjct: 284 GREVSVR--FVGRFNVSNLLAVYGAAIELGVSPDETLRVLSSLHPVNGRFEAI-RSPKGV 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +DYAHT ++L  +L +I  I  G  ++I V G GG+RD+GKRP+M + A + +D  I
Sbjct: 341 SAIIDYAHTPDALANVLSSIDEIVHGKAQVITVCGAGGNRDKGKRPLMAQEAANRSDRVI 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-----------EMLNKQDVLV 463
           +T DNPR E+P+ I  +++ G+    ++  R + I  AI            M    DV++
Sbjct: 401 ITSDNPRFEEPQAIVDDMLAGL----DETQRAKTI--AIVDRREAIRAAAAMAQAGDVIL 454

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +AGKGHE    +  G K    D + +R+  GL
Sbjct: 455 IAGKGHEPYQEIK-GVKHHFDDHEEVRKAFGL 485


>gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
 gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
          Length = 486

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/501 (40%), Positives = 285/501 (56%), Gaps = 27/501 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL  + F               +  I  V++DSR +  GW+F A+ G K DG  F  
Sbjct: 4   RLSDLFNRPFA-------------TDPVIAGVTADSRKVTTGWLFAALPGTKVDGRDFAE 50

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+A+GA AI+      L+          P++  ++ R+  +L A+  +GK P   +AVT
Sbjct: 51  GAVAKGAAAILA-PEGGLEGL------GVPVVRSEDARRAYALAAAAFWGKQPAMCVAVT 103

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-------QDNRLTTPSPIYLAKAL 174
           GT+GK+SVA F +QI  + G  +  +G    + S             LTTP    +A+ +
Sbjct: 104 GTNGKTSVAGFCRQIFTKLGHKAASMGTLGVVVSQPGQPDQQLTPPGLTTPDAGDVAEMI 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L+  GVTH+++EASSHG+DQ R+DG+KL A  FTN  +DH+DYH + +AY  AK+RLF
Sbjct: 164 ARLADMGVTHLALEASSHGVDQRRIDGVKLSAAGFTNFTQDHLDYHGSMEAYRAAKLRLF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L P  + A++ AD     +    A  +G  V SVG +G+ + L         Q + + 
Sbjct: 224 DTLTPAGAMAVLNADSEAFPDFAAAAVTSGQSVFSVGEEGQGLRLLSRTPTPAGQDLVVE 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            EG       PL G FQ  N LVAAGLCIA G DSA VL+ LE L    GR + VG   +
Sbjct: 284 AEGVVHHLKLPLAGAFQASNVLVAAGLCIAAGEDSAKVLKALETLEGAAGRLQRVGRGPK 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GG  YVDYAHT + L+ +L+ +R  T+G++I VFG GGDRD+GKRP+MG I   LADIAI
Sbjct: 344 GGEAYVDYAHTPDGLQTVLEALRPHTAGKLIAVFGAGGDRDRGKRPLMGAIGAKLADIAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           VTDDNPRSEDP  IRA I+   PG  E G+R  AIR A+ ++++ DVLVVAGKGHE   I
Sbjct: 404 VTDDNPRSEDPASIRAAILEAAPGAREIGDRRAAIRAAVALMSEGDVLVVAGKGHEQGQI 463

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           V           + ++ + G+
Sbjct: 464 VAGVVHPFDDVAETLQALEGV 484


>gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 489

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 247/473 (52%), Gaps = 18/473 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR ++ G ++VAI G + DGH FI +A+++GA  +V     SL D    +  +
Sbjct: 17  IRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVD----VPPD 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P + V + R+  S  ++R+YG    ++  + VTGT+GK++   ++  + + +G+    +
Sbjct: 73  VPYVRVTSARRAASALSNRVYGFPSRHLTVVGVTGTNGKTTSVHWLTHVLRFAGMRVGML 132

Query: 148 GPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 +       +LTT     L +AL  +   G TH  +E SSHG+ QHR   +    
Sbjct: 133 SSVFNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDL 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL R+H+D+H + + Y  AK RLF  L  ++  AI+  DD Y+  +   A N    
Sbjct: 193 AIFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVM---AENCVAP 249

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++ G +   +  + V     + +V+I +  G+  + +   PG + +YN L        +
Sbjct: 250 IVTYGVRSGDVRGRVVETDGWRTRVSIRLPNGEKLEGVLHHPGMYNLYNLLAVVAAAYVL 309

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ +  +   +  L  +PGR   V     G  + VDYAHT ++L  IL   R  TSGR+ 
Sbjct: 310 GVSADDIAGVIPTLPTIPGRMH-VIRPEHGPTVIVDYAHTPDALRQILSTARQWTSGRVW 368

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI----- 440
           +VFG  G+RD+GKRP MG IA  +AD  ++T D+  SEDPE+I  EI+ G          
Sbjct: 369 LVFGGRGERDRGKRPEMGAIAASMADHVLITTDSSYSEDPERIANEILAGAQRVHRARCD 428

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R +AI  A+   N +DV+++ G+GHE+  +V  G +    D D++RE L
Sbjct: 429 VVLDRAQAIERAVIEANDEDVILITGRGHESFQVV-GGLRLEQTDADMVREAL 480


>gi|227113991|ref|ZP_03827647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 495

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/495 (34%), Positives = 252/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R + E+  DSR   AG +FVAIVG+K DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVQDTPARALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           V  +     D +       P++ + N  + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  VAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +   A     TT S + + + LS L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A  FTNL RDH+DYH   ++Y  AK  LF E   +    +I A
Sbjct: 184 VSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFSE--HRVGQMVINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD      + +  +A    +      G +G+++   ++    N   V         +   
Sbjct: 242 DDEVGLRWLAKLPDAVTVTMENNLVPGCRGRWLKATQIDYHDNGATVAFDSSWGHGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +++G     ++    +L  V GR E     ++   + VDYAH
Sbjct: 302 RLMGAFNVSNMLLALATLLSLGYPLDKLIIAGSQLQPVCGRMEVFHAEAK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV++VAGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 481 YS-DRITVARLLGVI 494


>gi|332704506|ref|ZP_08424594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 485

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 251/473 (53%), Gaps = 19/473 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V + S  + AG +FVA+ G + DG  FIP A+A+GA  IV +    L + +        +
Sbjct: 21  VRAHSGKVGAGDVFVAVPGPQADGAGFIPDALARGAAWIVAAPGVRLPEGATA-----RL 75

Query: 93  LVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +  D+ R+ L   A   +G   H   ++ VTGT+GK++++  ++Q+   SG     +G  
Sbjct: 76  VTHDDPRQALGDLAQAAFGTAGHGYKLVGVTGTNGKTTISYILEQLFGGSGRKVGVLGTV 135

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           S     F+ D  LTTP  + L + L+ +   GV    +E SSH LDQ R+ G+   A   
Sbjct: 136 SYRWPGFSMDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSSHALDQQRVAGLAYDAAVL 195

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH+  + YF AK RLF EL  +    ++  +D Y   +++   +AG  VL 
Sbjct: 196 TNLTQDHLDYHKDMETYFQAKARLFRELPKEGKAWVVNYEDPYGLRLLREGLSAGRSVLG 255

Query: 270 VGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G +   + +  + A          ++ +  EG+ F+ + PL G     N L A G+   
Sbjct: 256 YGLETPPVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSPLVGRHNAMNLLTAMGVGFK 315

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+     ++ L     V GR E V TN  G  ++VDYAHT ++L  +L  ++ +   R+
Sbjct: 316 LGL-RESDMQALAGFTGVSGRLERV-TNPHGLNVFVDYAHTPDALVNVLSAVKALGVRRL 373

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIE 441
           + VFGCGG+RD+ KRP+MG+     AD+A++T DNPR EDP  I  ++   + G    + 
Sbjct: 374 VCVFGCGGNRDRAKRPLMGQAVCRHADVAVLTSDNPRHEDPLAIIEDVKPGLSGCARVVI 433

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + +R +AI  A+E L  +D LVVAGKGHE    + +  K    D  ++RE+LG
Sbjct: 434 EPDRRKAIALALEGLTAEDALVVAGKGHEPYQQIGD-VKHPFSDQQVVRELLG 485


>gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15]
          Length = 485

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 237/476 (49%), Gaps = 14/476 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I+ + +DSR + +G  F+A+ G +     ++ +AIA GA  I++    + Q    T 
Sbjct: 12  DVTIHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLE---AQQAGECTE 68

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                I+ V   R  +   A R +    + +  + VTGT+GK+SV  +V Q+ + +G   
Sbjct: 69  HHGALIVPVAGLRSLVGRIADRFFEHPSQRLRLIGVTGTNGKTSVCQYVAQLLKETGTPC 128

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +    Q    TTP  + + + LS +  Q      +E SSH LDQ R+D + 
Sbjct: 129 GILGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGRVDNLS 188

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTNL RDH+DYH + +AY  AK +LF+    +   ++I  DD + +++ ++    
Sbjct: 189 MTGAVFTNLTRDHLDYHGSMEAYGAAKAQLFQR--EELHFSVINFDDPFGRQLFEQLDGK 246

Query: 264 GCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             RV  S+      + L++        +  +  E   F    PL G F   N L A    
Sbjct: 247 CDRVRYSLHEAQTELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAAMATV 306

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +G+    V + + +L   PGR E     + G R+ VDYAHT ++L   L  +R   +G
Sbjct: 307 LTLGVPIERVQQAVGRLTPPPGRLERF-VGANGVRVVVDYAHTPDALANALTALRPHVTG 365

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-- 440
            ++ VFGCGGDRD GKRP M + A  LAD  +VTDDNPRSEDPE I   I+ G       
Sbjct: 366 ELVCVFGCGGDRDAGKRPEMAREAERLADRVVVTDDNPRSEDPETIAEHILAGFTDAARV 425

Query: 441 -EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
               +R EAIR+ I      DV+++AGKGHE    +  G+K    D + +R +L L
Sbjct: 426 SVIHDRAEAIRSTIRSATPNDVVLIAGKGHEAYQEIA-GQKYPFSDAEQVRHVLKL 480


>gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 487

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 265/501 (52%), Gaps = 27/501 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I K   +L+  +    +Q + E ++  ++ D+R +  G +F+ +     D H F  +AI
Sbjct: 1   MIGKKLVDLLAGVDYKVLQGKIEHEVKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
            QGA  +++            +     I+ VD++RK +S+ A   Y K  E   ++ VTG
Sbjct: 61  KQGATILMIEHEIDQ------VPEKVTIIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFA---QDNRLTTPSPIYLAKALSYLS 178
           T+GK+S+  F+ Q+    G  +  IG   +T+       +    TTP  I L  +L  + 
Sbjct: 115 TNGKTSITHFIAQVLSTLGEKTGVIGTIRNTLEGEKLKTKKINPTTPDAIELQASLKEML 174

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G T+  +E +S  L Q+R+ G+    G FTNL +DH++ H T +AY  AK++LF+   
Sbjct: 175 DKGATYGVMEVTSSALAQNRVYGMAYQVGVFTNLTQDHLEEHGTMEAYGAAKLKLFKNC- 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEG 297
                 I+  DD  ++++ +  H   C+V++ G   K     +++          +   G
Sbjct: 234 ---RIGIVNQDDLMAEKIKQEGH---CKVITYGIDKKADFKAEQIHQGLTGVDFKLIYLG 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K +   FP+PG F VYNAL      +++G +   +LE L  ++ VPGRF+ +  N++G  
Sbjct: 288 KQYSINFPVPGRFSVYNALATIATLVSLGYELTNILEALHWINEVPGRFQIIP-NTKGVL 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAH+ +SL+ +L+  + + SG++ VVFGCGGDRD  KR  MG +A   +D+ I+T 
Sbjct: 347 VVVDYAHSPDSLKQLLQTTKDLISGKLTVVFGCGGDRDTSKRAEMGTMAGAYSDLTIITS 406

Query: 418 DNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+E PE+I A+I  GI      +    NR  AI  A+    + D +V+AGKGHET  
Sbjct: 407 DNPRNEKPEQIMADIEKGILEVKGRYEMIKNRKLAIVAALAEAEEGDAVVIAGKGHETYQ 466

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           ++ N +K    DC+I+   L 
Sbjct: 467 LIGN-QKWHLDDCEIVSNYLN 486


>gi|238754431|ref|ZP_04615786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
 gi|238707260|gb|EEP99622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
          Length = 490

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 165/489 (33%), Positives = 243/489 (49%), Gaps = 14/489 (2%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ + +    R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +  
Sbjct: 5   LAPWGLDVPGRALREMTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEG 64

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
              D S T     P++ + N  + LS  A + Y +      ++ VTGT+GK++    + Q
Sbjct: 65  IAADASITAMHGVPVIYLSNLNQHLSRLAGQFYQQPGAALRLIGVTGTNGKTTTTQLLAQ 124

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             Q  G +S  +G     +         TT S + + + L  L  QG T  ++E SSHGL
Sbjct: 125 WSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDVQQVLHSLVEQGATVAAMEVSSHGL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD    
Sbjct: 185 VQNRVAALPFAAAVFTNLSRDHLDYHGDMASYELAKWLLFS--THQSEHKIINADDDVGL 242

Query: 255 EVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             + +   A    +      G+ G ++    V    N   +              L G F
Sbjct: 243 RWLSQLPQAVAVSMENKVPQGWSGPWLSASHVDYHDNGATINFDSSWGKGQLDSRLMGAF 302

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N LVA    +++    A +L    +L  V GR E      +   + VDYAHT ++LE
Sbjct: 303 NVSNLLVALSTLLSLDYPLADLLAAAPQLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALE 361

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A
Sbjct: 362 KALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQLADRVVVTDDNPRSEEPQAIVA 421

Query: 431 EIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I+ G+      +    R EA+ +AI    + DV++VAGKGHE   +V +     S D  
Sbjct: 422 DILGGLMDAGRVLAIHGRAEAVTSAIMQAKEDDVVLVAGKGHEDYQLVGHRRLDYS-DRI 480

Query: 488 IIREILGLI 496
            +  +LG++
Sbjct: 481 TVARLLGVV 489


>gi|15829343|ref|NP_308116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751405|ref|ZP_02776427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755693|ref|ZP_02780700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764036|ref|ZP_02789043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771309|ref|ZP_02796316.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776929|ref|ZP_02801936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781970|ref|ZP_02806977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789612|ref|ZP_02814619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801512|ref|ZP_02826519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939301|ref|ZP_03084683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208809395|ref|ZP_03251732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814085|ref|ZP_03255414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821065|ref|ZP_03261385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398185|ref|YP_002268693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217326553|ref|ZP_03442637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791222|ref|YP_003076059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226842|ref|ZP_05941123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255246|ref|ZP_05947779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK966]
 gi|21362683|sp|Q8X9Z2|MURE_ECO57 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13359545|dbj|BAB33512.1| meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767763|gb|EDU31607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014523|gb|EDU52645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000402|gb|EDU69388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357056|gb|EDU75475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359898|gb|EDU78317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365881|gb|EDU84297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370798|gb|EDU89214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376347|gb|EDU94763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208729196|gb|EDZ78797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208735362|gb|EDZ84049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741188|gb|EDZ88870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209159585|gb|ACI37018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746594|gb|ACI71604.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746596|gb|ACI71605.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746598|gb|ACI71606.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746602|gb|ACI71608.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|217322774|gb|EEC31198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590622|gb|ACT69983.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. TW14359]
 gi|320190392|gb|EFW65042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC1212]
 gi|320642124|gb|EFX11475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647487|gb|EFX16282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652821|gb|EFX21059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320668831|gb|EFX35626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345195|gb|EGD68938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1125]
 gi|326346951|gb|EGD70685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1044]
          Length = 495

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 256/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q  T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQDATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+          +R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
 gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
          Length = 507

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/496 (32%), Positives = 245/496 (49%), Gaps = 23/496 (4%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      +  I+ +  DSR + +G +FV  +G   DGH F+PQA  QG
Sbjct: 3   LTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A  IV +    + +          +++V +T   LS  A   YG+  E++  + +TGT+G
Sbjct: 63  AVVIVATKEVEIGESVKA------VVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ +  ++ I +  GL +  IG  S        QD   TTP  +YL K ++ +      
Sbjct: 117 KTTTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTE 176

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKES 242
              +E SSH L Q R   I      FTNL RDH+DYH+ + +Y  AK +LF  ++ P   
Sbjct: 177 VCVMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARH 236

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             ++  DD  +   +    N    V++ G +    +H   +     +  V +     + +
Sbjct: 237 RKVVNIDDPNAGYFVS-LGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIE 295

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   VYN L A  + IA+      ++  +E++  VPGR E V    +   + VD
Sbjct: 296 ISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELVDEE-QPFAVIVD 354

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +L  +R     RII V GCGGDRD+GKRP+M KIA   +++ I T DNPR
Sbjct: 355 YAHTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIFTSDNPR 414

Query: 422 SEDPEKIRAE----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           SEDP K        I +G   F+    R  A+R A+ M  + D +V+AGKGHE   I+  
Sbjct: 415 SEDPRKFERSYYPPIWNGNRVFVYDL-RKIAVRAAVAMGEEGDAVVIAGKGHEKYQIIGK 473

Query: 478 GEKKMSVDCDIIREIL 493
            E+K   D +  RE L
Sbjct: 474 -ERKYHDDREECREAL 488


>gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
 gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
          Length = 493

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/503 (31%), Positives = 232/503 (46%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F               E   N+++ DSR +  G +F+AI G++ DG  +I
Sbjct: 1   MLLRDLLAPWF----------HYAGSE-SFNKLTLDSRAVGPGDLFIAIPGHQADGRKYI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119
             A+ QGA A +V +                IL     R+  +L A           ++ 
Sbjct: 50  RSAVQQGAVASLVHTDDPESHGKCVDDEGKQILFFQLNRQLSALAAQAYPLSAERLKLVG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+   + Q+    G  S  +G     +     D+  TT   I +   L    
Sbjct: 110 VTGTNGKTSITQLMAQLVTLLGKQSAVMGTLGNGLWGDLVDSGNTTADAITMMAQLQEFD 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG    ++E SSHGL Q R++ +      FTNL RDH+DYH T QAY +AK RLF    
Sbjct: 170 AQGAELCAMEVSSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLF--NF 227

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVT 292
           P  S  +I  DD   K+ +           S+          K I+ +     H      
Sbjct: 228 PSLSSGLINLDDEIGKQWLAEHDTGKYTSFSIHGEPASIENSKAIYTQNNHFHHQGVDAK 287

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +   G   D   PL G F + N + A G    +G D   ++  + KL  V GR E   T 
Sbjct: 288 LVWPGGHADLCSPLLGSFNLSNLIAALGALYLLGFDMHSLVAVVPKLQAVAGRMERFTTP 347

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I VDYAHT +++E  LK +R    G +  +FGCGGDRD+GKRP+M + A   AD 
Sbjct: 348 DD-VTIVVDYAHTPDAIEQALKALRGHCDGELWCLFGCGGDRDKGKRPLMAQAAEKYADR 406

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +VT DN RSE P+ I  +I+ G+      + + +R  AIR  +      D++++AGKGH
Sbjct: 407 VVVTSDNARSEQPDVIINDILEGLTAPDKALTQVDREVAIRQVVANAKAGDLVLLAGKGH 466

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           ET   +  G ++   +  + RE+
Sbjct: 467 ETYQEIA-GVRRQYDERALAREL 488


>gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
 gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
          Length = 494

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 163/493 (33%), Positives = 247/493 (50%), Gaps = 17/493 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L+  ++  P  + +  I+ + +DSR ++AG  FVA+ G +     +I QAI+ GA  
Sbjct: 6   LSTLLQGIAPVPSVF-DVTIHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISAGATV 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           I++ SA   + +         I+ V   R  L   A R +    + +  + VTGT+GK+S
Sbjct: 65  ILLESAQPDECYE---HEGVLIVPVTALRAHLGKIADRFFEHPSQRLRLIGVTGTNGKTS 121

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+ ++  + Q +G     IG     +    Q+   TTP  + + + LS + +QG    ++
Sbjct: 122 VSHYIATLLQETGTPCGVIGTLGYGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAAAM 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L+Q R+D + +    FTNL RDH+DYH +  AY  AK RLF     +   A+I 
Sbjct: 182 EVSSHALEQGRVDNLTMTGAVFTNLTRDHLDYHGSMDAYGAAKARLFHR--EELHFAVIN 239

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFP 305
            DD + +++ ++      RV           L       +    + SV+G    F+    
Sbjct: 240 FDDPFGRQLYEKLDGKCDRV-RYSLHEAQTELWLTEFAPSIDGFSASVDGLWGRFNVSAR 298

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G F V N L A    +++G+    V + +E+L   PGR E     S   R+ VDYAHT
Sbjct: 299 VLGSFNVSNILAAMASVLSLGVPVERVQQAVERLSPPPGRLEPFA-GSNDVRVVVDYAHT 357

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L   L  +R    GR+  VFGCGGDRD GKRP M + A   AD+ IVTDDNPRSEDP
Sbjct: 358 PDALNSALAALRPHVGGRLFCVFGCGGDRDTGKRPEMAREAERGADVVIVTDDNPRSEDP 417

Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I ++I+ G           +R EAIR AI      D+++VAGKGHE    V  G++  
Sbjct: 418 DAITSDIVAGFEHPEQIAVIHDRAEAIRQAIHSAVAGDIVLVAGKGHEAWQEVA-GQRFP 476

Query: 483 SVDCDIIREILGL 495
             D + +R  L L
Sbjct: 477 FSDAEQVRHALSL 489


>gi|291326817|ref|ZP_06125981.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
 gi|291312721|gb|EFE53174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
          Length = 471

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/474 (33%), Positives = 233/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +F+AI G++ DG  +IPQAIAQG  A++  +     +         P+
Sbjct: 1   MTLDSRKAAAGDLFIAIKGHQSDGRHYIPQAIAQGVSAVIAEAEGEAVEGEIRFVHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +++    LS  A   Y +      ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLNDLNNRLSALAGEFYHQPSAKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +      +  TT S + +   L+ L +Q  T  ++E SSHGL Q R+  ++  A  F
Sbjct: 121 GNGLLGHVSPSENTTGSAVDIQLELTQLLNQKATLTAMEVSSHGLVQGRVADLQFDAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH   ++Y  AK  LF          II ADDA   + ++R   A      
Sbjct: 181 TNLSRDHLDYHGDMESYEAAKWLLFS--THNTKSQIINADDAIGLKWLQRLPQACAVTME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +   +QG ++   +V        +       + DF  PL G F V N LVA    + +
Sbjct: 239 NKIPQDWQGPWLKAMEVEYHDKGATIHFDSSWGNGDFESPLMGAFNVSNLLVAMATLLMM 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
                 +L     L  V GR E V +      + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 DYPLNKLLAATSSLSPVCGRME-VFSAPNKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG  A + AD  ++TDDNPRSEDP  I  +I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGAAAEEYADKIVITDDNPRSEDPIDIINDIMAGLLDSSRALAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+   I   +  DV+V+AGKGHE   I+   +   S D   +  +LG+I
Sbjct: 418 PGRPEAVTNTILQASPDDVIVIAGKGHEDYQIIGQRKLDYS-DRLTVARLLGVI 470


>gi|323964819|gb|EGB60286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli M863]
          Length = 495

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 256/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|15799769|ref|NP_285781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 EDL933]
 gi|12512788|gb|AAG54389.1|AE005185_6 meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
          Length = 495

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 256/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLXXVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q  T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQDATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+          +R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|193065884|ref|ZP_03046945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|193070831|ref|ZP_03051764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194429350|ref|ZP_03061875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|256020077|ref|ZP_05433942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sp. D9]
 gi|260842321|ref|YP_003220099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|260866238|ref|YP_003232640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|307311464|ref|ZP_07591106.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|332281227|ref|ZP_08393640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
 gi|192926471|gb|EDV81104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|192955861|gb|EDV86331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194412570|gb|EDX28867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|257757468|dbj|BAI28965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|257762594|dbj|BAI34089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|306908443|gb|EFN38941.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|315059308|gb|ADT73635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli W]
 gi|320200396|gb|EFW74982.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli EC4100B]
 gi|323176393|gb|EFZ61985.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1180]
 gi|323380134|gb|ADX52402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli KO11]
 gi|332103579|gb|EGJ06925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
          Length = 495

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 256/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|323975751|gb|EGB70847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           TW10509]
          Length = 495

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
 gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
          Length = 492

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEHADIRIIDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
 gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
          Length = 493

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/487 (32%), Positives = 243/487 (49%), Gaps = 8/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   + +    +    ++++  DSR +  G  FVA+ G+  DG  FI  AI +GA A+V 
Sbjct: 11  LAPWVDLAANPFGRLPVSQLELDSRKVTPGATFVAVQGHAVDGRKFIASAIDKGAAAVVA 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             +      S  +++  P++ +++    LS  A RLY      ++ VTGT+GK+++   +
Sbjct: 71  QESSEHPHGSIEVQAGIPVVYIESLDSQLSALAERLYPLQSMKLIGVTGTNGKTTITQII 130

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q        +  +G          Q    TT S I + + L+ L  Q   + ++E SSH
Sbjct: 131 AQWLGLVEKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLAALEQQSADYTAMEISSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +      FTNL RDH+DYH T + Y  AK+ LF E   K + A+I  DD  
Sbjct: 191 GLVQGRVKTLPFAVSVFTNLSRDHLDYHGTMEEYEQAKLTLFTE--HKTAHAVINVDDPV 248

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N+    L        I+  +V    +   ++ S    D     PL GEF  
Sbjct: 249 GARWASTLANSVQVSLKTLDADNAIYASQVDYSESGISLSFSGMYGDGKLDVPLIGEFNA 308

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N LVA    + +GID   ++E   +L  V GR E   T S+  ++ VDYAHT ++LE  
Sbjct: 309 NNVLVALATLLTLGIDKQRLVETASQLTPVIGRMELFQTPSK-AKVVVDYAHTPDALEKA 367

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +R    G++ V+FGCGGDRD GKRP+M +I   LAD  I+ DDNPRSEDP +I  ++
Sbjct: 368 LLALRVHCKGKLWVIFGCGGDRDVGKRPMMAEIGERLADKVIIADDNPRSEDPARIVEDM 427

Query: 433 IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G+        + +R  A++ A+     QD++++AGKGHE   ++ N     S D +  
Sbjct: 428 LAGMSQPDLASVEHDRFNALQFALSQSQAQDIILLAGKGHEDYQVLANETIHYS-DRESA 486

Query: 490 REILGLI 496
           +++L LI
Sbjct: 487 QQLLELI 493


>gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-92-679]
 gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 492

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA      DG  +IP
Sbjct: 4   KLSPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACQVEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDGR---FAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETAHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFRT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|157369001|ref|YP_001476990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Serratia proteamaculans 568]
 gi|157320765|gb|ABV39862.1| UDP-N-acetylmuramyl-tripeptide synthetase [Serratia proteamaculans
           568]
          Length = 495

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 171/495 (34%), Positives = 252/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R + E++ DSR   AG +FVA+VG++ DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWVPTAPGRALREMTLDSRIAAAGDLFVAVVGHQADGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D + T     P++ +    + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  IAEAEGQAEDGAITEMHGVPVIYLSQLNQRLSALAGRFYHEPAERLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L  QG T  ++E
Sbjct: 124 TQLLAQWGQLLGETSAVMGTVGNGLLGQVCPTENTTGSAVDIQHVLNELVDQGATLAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A  FTNL RDH+DYH     Y  AK  LF     +   AII A
Sbjct: 184 VSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMANYEAAKWSLFAG--HEVGQAIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        L  G  G+++    V    N   +  S    D +   
Sbjct: 242 DDEVGQRWLSQLPDAVAVTMQDNLQPGCHGRWLKTTAVNYHDNGATIHFSSSWGDGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +++G   A ++    +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLSLGYPLAKLVATGNQLQPVCGRMEVFNAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPR+E+
Sbjct: 361 TPDALEKALEAARLHCLGQLWCVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+      +    R EA+ +AI    +QDV++VAGKGHE   +V N    
Sbjct: 421 PQAIIADILTGLLDAGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG++
Sbjct: 481 YS-DRTTVARLLGVV 494


>gi|91209149|ref|YP_539135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|117622371|ref|YP_851284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218557025|ref|YP_002389938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli S88]
 gi|237704234|ref|ZP_04534715.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|91070723|gb|ABE05604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|115511495|gb|ABI99569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218363794|emb|CAR01454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli S88]
 gi|226902146|gb|EEH88405.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|294490144|gb|ADE88900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IHE3034]
 gi|323955283|gb|EGB51056.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H263]
          Length = 495

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 492

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 233/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFRT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ LEK+    GR + +  NS  
Sbjct: 290 PWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKR +MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
 gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
          Length = 484

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/495 (38%), Positives = 276/495 (55%), Gaps = 12/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  LI +   E+   +S       +  +   + D+R +  G +F A  G + +G  +I
Sbjct: 1   MRLGSLIEELDAEVAKAVS--AAGGLDTSVTGFAIDNRKVAPGTVFGAFQGLRVNGEDYI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA AIV                    +   N R+  +  A+R +   P+  +AV
Sbjct: 59  TEAVRAGAIAIVA--------RPEAQVDGAIHIAAANPRQLFAQLAARFFAPFPDVTVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +QI +  G ++  IG    T S       LTTP  +     ++ L  
Sbjct: 111 TGTNGKTSTVELARQIWRMLGHNAASIGTLGVTTSVDQVSTGLTTPDIVTFLANMAGLRR 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH + EASSHGLDQ+R +G+ ++AG+FTNL RDH+DYH    +YF+AKMRLF+E++ 
Sbjct: 171 EGVTHAAFEASSHGLDQYRTEGLPVVAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVA 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+I+ADD++S++ + RA   G RVLSVG QG+ + L         Q + I  EG  
Sbjct: 231 PDGSAVIWADDSWSEKAIARATKRGLRVLSVGVQGRALQLANRTPTQLGQTLEIEAEGTR 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G +Q  NAL AAGL IA G D+A V+E L ++  V GR E    +  G  +Y
Sbjct: 291 YKVNLPLIGAYQAANALTAAGLVIATGGDAARVMELLGRVQPVRGRLERAVISQTGAPVY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L   ++ +R  T GR+I +FG GGDRD GKRP MGK+A DL+D  IVTDDN
Sbjct: 351 VDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGDRDAGKRPQMGKVAADLSDHVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRA ++ G P   E G R +AI  AI      D++++AGKGHE   I+ +  
Sbjct: 411 PRSEEPSAIRAAVLAGAPDAQEIGGRRDAIAAAIAQAGADDIVLLAGKGHEQGQIIGD-R 469

Query: 480 KKMSVDCDIIREILG 494
                D  + RE  G
Sbjct: 470 VLPFDDVTVARECAG 484


>gi|82542689|ref|YP_406636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii Sb227]
 gi|81244100|gb|ABB64808.1| meso-diaminopimelate-adding enzyme [Shigella boydii Sb227]
 gi|320183628|gb|EFW58471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella flexneri CDC 796-83]
          Length = 495

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++ +  V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E      +
Sbjct: 292 SSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTVPGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 352 -PTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|170682313|ref|YP_001742207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
 gi|170520031|gb|ACB18209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
          Length = 495

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 258/505 (51%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   AII ADD   +  + +  +A        +++   G+++   +V    +   +  S
Sbjct: 232 HRCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|191167747|ref|ZP_03029554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
 gi|190902173|gb|EDV61915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
          Length = 495

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|293392864|ref|ZP_06637182.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
 gi|291424723|gb|EFE97934.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
          Length = 471

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +     D         P+
Sbjct: 1   MTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  E +  + VTGT+GK++    + Q  Q  G ++  +G  
Sbjct: 61  IYLSQLNQRLSALAGRFYLQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETAAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +      +  TT S + +   L+ L+  G T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVCPSENTTGSAVDVQHVLNDLAEHGATFAAMEVSSHGLVQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH    +Y  AK  LF     +   AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMASYEAAKWSLFAG--HEVGQAIINADDDVGQRWLAQLPDAVAVTMQ 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L  G +G+++    V    N   V  S    D +    L G F V N L+A    +++
Sbjct: 239 GNLQPGCRGRWLKATDVNYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAALLKSGSQLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALAAARLHCQGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPR+E+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLDPGRALVI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +A+    +QDV++VAGKGHE   +V N     S D   +  +LG+I
Sbjct: 418 HGRAEAVTSAVMQAKQQDVVLVAGKGHEDYQLVGNRRLDYS-DRTTVARLLGVI 470


>gi|260853298|ref|YP_003227189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
 gi|257751947|dbj|BAI23449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
          Length = 495

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 256/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVTAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|218698508|ref|YP_002406137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI39]
 gi|218368494|emb|CAR16229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI39]
          Length = 495

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 256/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis OX99.30304]
          Length = 492

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 LWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           frigidimarina NCIMB 400]
 gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 496

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/503 (30%), Positives = 240/503 (47%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+   F              RE  +N ++ DSR ++ G +FVA+ G+K DG  FI
Sbjct: 1   MLLNDLLAPWF----------HYSGRE-SVNGLTLDSRDVERGGLFVALPGHKVDGRAFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSAT-IRSNTPILVVDNTRKFLSLFAS--RLYGKHPENI 117
           PQAI  GA AI++ +    +      ++   P++      + LS  A+   L      ++
Sbjct: 50  PQAINAGATAILIHTDNPDEHGIVDRLQYTVPLVFFCQLGRQLSAVAAQFYLSNSQSLSL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+SV+  + QI    G  +  +G     +     D+  TT   I + + LS 
Sbjct: 110 IGITGTNGKTSVSQIIAQIVYLLGHQAAVMGTLGNGLWGQLVDSGNTTADAITVMRQLSE 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +++G    ++E SSHGL Q R++        FTNL RDH+DYH    +Y  AK RLF+ 
Sbjct: 170 FAAEGAELCAMEVSSHGLVQGRVEAAPFEIAVFTNLSRDHLDYHGDMDSYAAAKKRLFK- 228

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV 295
             P     +I  DDA   + +    +   +  S+ G      +   +         T+  
Sbjct: 229 -FPSIKHGVINIDDAVGAKWLTELASDQNKSFSIKGNSAADFYCDAIEYHDAGVTATLHF 287

Query: 296 ------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 +        PL G F + N + A  +    G   A +L  L  L  V GR E  
Sbjct: 288 VEIDSEKSVSVQLNSPLLGAFNLSNLVAAIAVLYLQGKPMASILAVLPLLIPVAGRMERF 347

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            ++     + VDYAHT +++E  LK +R    G +  VFGCGGDRD+GKRP+M + A   
Sbjct: 348 -SSVNNATLVVDYAHTPDAIEQALKALRLHCKGTLWCVFGCGGDRDKGKRPLMAQAAERY 406

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  ++T DN RSEDP+ I  +I+ GI      + + +RIEAI   + +    D++++AG
Sbjct: 407 ADKVMITSDNARSEDPQTIINDILQGISQPQKVLTRVDRIEAITHVVSLAQVNDIVLLAG 466

Query: 467 KGHETVHIVTNGEKKMSVDCDII 489
           KGHET   V  GE+    +  + 
Sbjct: 467 KGHETYQEVA-GERIDYDERALA 488


>gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 497

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 255/504 (50%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELI--NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL  LI     EL+  N + +  +  ++ ++N+V S+SR ++ G +F+ + G   D HL
Sbjct: 1   MKLSHLI-----ELLGNNLVEVTNLNGKDPEVNDVVSNSRLLKPGNLFICLQGTSFDSHL 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
             P+   +GA A++             +  + PI+ V ++R   +     +     + + 
Sbjct: 56  LAPELQERGAAALIAEKKID-------VDLDIPIIYVKSSRLAEAHLYMEINDHPYKKLT 108

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTPSPIYLAKAL 174
            + VTGT+GK++V + +  I +     S  +G    +       + + TTP P  LAK +
Sbjct: 109 TIGVTGTNGKTTVTTLINHILETFQRKSALVGTVKNVIGDYVSTNPKNTTPGPATLAKYM 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                + + +  +E SSHGL  HR+DG++      TN+ RDH+D+H + + Y+  K+R+F
Sbjct: 169 KMAVEKNLEYFVMEVSSHGLAMHRVDGMRFDVAVLTNVTRDHLDFHASFEDYYRTKLRIF 228

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL     A++ +D+    ++  +           G +  F  ++ +         T+ 
Sbjct: 229 -NLLKPVGKAVVNSDNVNIGDI--KLPRDKIITYGFGNESDF-RMENLEISRTGMYFTVE 284

Query: 295 VE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G        L GE   YN         ++  D+  +LE +     VPGRFEFV   +
Sbjct: 285 TPFGSKHKVYTRLVGEHNAYNVTATIATMESLNYDTEHILEAISTFSGVPGRFEFVEEAT 344

Query: 354 R-GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G  + VD+AHT ++LE +LK  + ++ GRII+VFG GGD D+GKRP+MG+IA   AD+
Sbjct: 345 KYGFDVLVDFAHTPDALEKLLKTAKKLSEGRIIIVFGAGGDADKGKRPLMGEIASRFADV 404

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I+T D+P+ EDPE+I  +I  GI     ++   +R EAI  A+ + N+QD +++AG+GH
Sbjct: 405 VILTSDDPKKEDPEEILNDIEAGISKTKPYLVIPDRREAISVALTLANRQDTVLIAGRGH 464

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E      +       D  +++EIL
Sbjct: 465 EDYQAFADYVV-AFNDKRVVKEIL 487


>gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 494

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/493 (31%), Positives = 245/493 (49%), Gaps = 20/493 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++++    L+    I         + ++  DSR +  G +F+AI G++ DG  FI QA+A
Sbjct: 1   MLHRALDSLLRPFGINAPALS---LTDIQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVA 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGT 123
           QGA AIV            TI    P + + +    LS  A   Y +     +++ +TGT
Sbjct: 58  QGATAIVFEEDGEFVAPPLTI----PCIGIRDLPARLSELAGYFYEQPANKLDLVGITGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GKS+ A  V       G  +  +G     +     +   TT S + +   L+ L  QG 
Sbjct: 114 NGKSTTALLVANWRTLLGGKAGVMGTIGNGLFGELVEAENTTGSAVQVQANLASLQQQGA 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++E SSHGL QHR+  +   A  FTNL RDH+DYH T +AY  AK  L +  L  E 
Sbjct: 174 ALVAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVDEP 231

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            A+I ADD   ++ +     A    ++     + G+ +  +         +  I+    +
Sbjct: 232 CAVINADDQLGRQWLAAYPGAVAFSVNGPIADHPGRQLTAQDPHFHQQGFRTQINSSWGN 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G F V N L A G  + +G D  ++L    +L  V GR E  G         
Sbjct: 292 GVLSAPLLGRFNVSNVLAAMGAMLVLGYDFNVLLATAPQLQPVTGRMECFG-GGNAPLAV 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L+ +R    G++  + GCGGDRD+GKRP+M  +A   AD  I+TDDN
Sbjct: 351 VDYAHTPDALEKALQALRVHCEGQLWCLVGCGGDRDRGKRPMMAAMAEQHADRVILTDDN 410

Query: 420 PRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR+E+P +I A+++ G+        + +R++AI  A+   +KQD+++VAGKGHE   I+ 
Sbjct: 411 PRTEEPAQIMADMVAGLRDPAAVQVEHDRVKAIALALGQASKQDIILVAGKGHEDYQIIG 470

Query: 477 NGEKKMSVDCDII 489
             +K+   D + +
Sbjct: 471 T-DKRHYSDRETV 482


>gi|320197464|gb|EFW72078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli WV_060327]
          Length = 495

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFTASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|157159556|ref|YP_001456874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|254037500|ref|ZP_04871577.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|256025399|ref|ZP_05439264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia sp. 4_1_40B]
 gi|301028568|ref|ZP_07191798.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|307136686|ref|ZP_07496042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli H736]
 gi|331640538|ref|ZP_08341686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331681470|ref|ZP_08382107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|157065236|gb|ABV04491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|226840606|gb|EEH72608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|299878379|gb|EFI86590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|309700296|emb|CBI99584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli ETEC H10407]
 gi|323935137|gb|EGB31504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1520]
 gi|323939875|gb|EGB36075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E482]
 gi|324112502|gb|EGC06479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia fergusonii
           B253]
 gi|331040284|gb|EGI12491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331081691|gb|EGI52852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|332341417|gb|AEE54751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Escherichia coli UMNK88]
          Length = 495

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 256/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 2; AltName:
           Full=Meso-A2pm-adding enzyme 2; AltName:
           Full=Meso-diaminopimelate-adding enzyme 2; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           2
 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum ATCC 824]
 gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum EA 2018]
          Length = 483

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 257/505 (50%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+     +LI              I  +S +S+ ++  ++FV+I G + DGH FI
Sbjct: 1   MKLKQLLQNIDYDLIKG-------DININIEGISYNSKKVKQNYVFVSIKGARFDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA A+++      +DF  +I  NT ++ V N++  L+   +  Y +     N++
Sbjct: 54  KEAAQNGAAAVIID-----EDFHDSI-ENTTLVKVKNSKVALACLCNLFYEEPSRELNLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKAL 174
            VTGT+GK++V  +++ + +  G S+  IG             +    TTP  + L + L
Sbjct: 108 GVTGTNGKTTVIHYIRDMLEAFGNSTGTIGTLGYELKDKEINVEKINPTTPEALELNQIL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +G  +  +E +S  L +HR+D      G FTNL +DH+D H T + Y N K++LF
Sbjct: 168 RDFIDKGAKNAVMEVTSSALMKHRVDYCSFKVGVFTNLSQDHLDEHGTIENYKNEKIKLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTI 293
           +         +I  DD  + E++++     C   + G      +    +    N     +
Sbjct: 228 KMCP----VGVINLDDNIAGEIIEKGT---CEFFTYGVLTNADLTASDMVYKPNSVSFNV 280

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G        +PGEF VYN L A G  + +GID   +L+ +  +  V GR E +  N 
Sbjct: 281 HYKGISSKVKVNVPGEFTVYNVLAAIGSLLCLGIDFESILKLVSSIKPVLGRLETIN-NP 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT +SLE +L   R +T+GRII VFGCGGDRD+ KR +MG     L+D  
Sbjct: 340 LNKNIIIDYAHTPDSLEKLLIMAREMTNGRIITVFGCGGDRDKSKRGLMGMAVGILSDYC 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I+T DNPR E PE I  +I  G+      + +  +R  AI+  IE+L ++D+L++AGKGH
Sbjct: 400 IITSDNPRHEKPEDIIRDIERGMQTINSSYEKITDRRCAIKRGIEILKEEDILIIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E   I+ +  K    D +++ E+LG
Sbjct: 460 EDYQIIGDN-KVHFDDREVVNELLG 483


>gi|218547542|ref|YP_002381333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355083|emb|CAQ87690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
          Length = 495

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|82775492|ref|YP_401839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae Sd197]
 gi|309787239|ref|ZP_07681851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
 gi|81239640|gb|ABB60350.1| meso-diaminopimelate-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924817|gb|EFP70312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
          Length = 495

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALTTLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|320172824|gb|EFW48056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella dysenteriae CDC 74-1112]
          Length = 495

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 257/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        +++   G+++ +  V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKVIDVNYHDSGVTIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 499

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 152/508 (29%), Positives = 249/508 (49%), Gaps = 28/508 (5%)

Query: 1   MKLQDL----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L+ L    +      L++Q     +   +  +  +  DSR    G IFVA+ G   DG
Sbjct: 1   MNLKPLNNYIVALTEEHLLSQAYTGEVSTEQCPVTSIEQDSRRASEGCIFVALRGVHVDG 60

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             +IP+A+A G   IV            ++      L V +T K +++ AS  Y +    
Sbjct: 61  ADYIPKALAAGCRIIVTEHPR-----PESLSDEVAWLTVTDTAKAIAVLASVYYDRPERQ 115

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + VTGT+GK++ A+   Q+    G+ +         I         TTP  + L + 
Sbjct: 116 LTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVCIRIGDKEYPATHTTPDALELHRV 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +   G  ++ +E SSH L Q R+ G+      FTNL RDH+DYH T QAY  AK  L
Sbjct: 176 MRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLL 235

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+ L P ++ A++ ADD     ++    N    + +   +    ++ ++   +     T+
Sbjct: 236 FDHLSP-DAYALVNADDRNGSVMV---QNCAAHLHTYAMRSHADYMAQLLGQYVDGS-TL 290

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ ++ +    L G +  YN     G+   +   +D +L+L  +  L  V GRF+ +  
Sbjct: 291 LLDNEEVEIK--LVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLL-A 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + RG  + VDYAHT ++LE +LK +  + + ++ VV G GGDRD GKRP MG+IA ++ D
Sbjct: 348 SPRGYHVVVDYAHTPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCD 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAG 466
              +T DNPRSEDP+ I  +++ GIP           +R +AI  A     + D++V+AG
Sbjct: 408 HLYLTSDNPRSEDPQTIIDQMLEGIPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAG 467

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHET   +  G +    D +++REI  
Sbjct: 468 KGHETYQEIE-GVRHHFDDKEVVREIFA 494


>gi|194439405|ref|ZP_03071482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|253774885|ref|YP_003037716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160207|ref|YP_003043315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|194421664|gb|EDX37674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|242375921|emb|CAQ30602.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|253325929|gb|ACT30531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972108|gb|ACT37779.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|253976317|gb|ACT41987.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|323960031|gb|EGB55677.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H489]
 gi|323970757|gb|EGB66011.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TA007]
          Length = 495

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKANDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|331645195|ref|ZP_08346306.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
 gi|281177305|dbj|BAI53635.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE15]
 gi|330909932|gb|EGH38442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli AA86]
 gi|331045952|gb|EGI18071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
          Length = 495

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATICFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+ +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|187732212|ref|YP_001878895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
 gi|187429204|gb|ACD08478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
          Length = 495

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 256/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++ +  V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|283783872|ref|YP_003363737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
 gi|282947326|emb|CBG86871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
          Length = 495

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/495 (33%), Positives = 246/495 (49%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   +G +FVA+ G++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVTGLPARELREMTLDSRVAASGDLFVAVKGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++ VTGT+GK++ 
Sbjct: 64  IAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSENMRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVTPTENTTGSAVDVQHELAGLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  LF         AI+ A
Sbjct: 184 VSSHGLIQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFS--THHYGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++    V    +   +  +    + +   
Sbjct: 242 DDEVGRRWLTNLPDAVAVSMEDHINPNCHGRWLKAVAVDYHDSGATIRFTSSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLADLLKTATRLQPVCGRMEVFSAPGK-TTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCGGQLWCVFGCGGDRDKGKRPLMGAIAEQYADVVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R EA+  AI    + DV++VAGKGHE   I+      
Sbjct: 421 PRAIIDDILAGMLDAGRARVMEGRAEAVTNAIMQAKENDVVLVAGKGHEDYQIIGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|157159417|ref|YP_001461255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209917278|ref|YP_002291362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218552668|ref|YP_002385581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI1]
 gi|218693554|ref|YP_002401221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 55989]
 gi|293476745|ref|ZP_06665153.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|331666322|ref|ZP_08367203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331680658|ref|ZP_08381317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
 gi|157081447|gb|ABV21155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209910537|dbj|BAG75611.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218350286|emb|CAU95969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli 55989]
 gi|218359436|emb|CAQ96974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|291321198|gb|EFE60640.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|323945714|gb|EGB41762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H120]
 gi|324118435|gb|EGC12329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1167]
 gi|331066533|gb|EGI38410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331072121|gb|EGI43457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
          Length = 495

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|320540410|ref|ZP_08040060.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
 gi|320029341|gb|EFW11370.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
          Length = 495

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L  +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLGPWVPTAPRRALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D +       PI+ +    + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  IAEANGQAEDGAIVEMHGVPIIYLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     + +       TT S + L   L+ L+ QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLNHVCPAENTTGSAVDLQHQLNDLAEQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A  F+NL RDH+DYH     Y  AK  LF          I+ A
Sbjct: 184 VSSHGLVQHRVAALPFAAAVFSNLSRDHLDYHGDMANYEAAKWTLFAG--HDVGQMIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A    +      G  G+++    +    N   +  S    D +   
Sbjct: 242 DDQVGQHWLSKLPDAVAVTMQDNLLPGCHGRWLKTTAISYHDNGATLRFSSNWGDGEIAS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     ++E   +L  V GR E      +   + VDYAH
Sbjct: 302 QLMGAFNVNNLLLALATLLALGYPLDKLVETGSRLQPVCGRMEVFNAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    GR+  VFGCGGDRD+GKRP+MG IA   AD  ++TDDNPR+E+
Sbjct: 361 TPDALEKALEAARLHCQGRLWCVFGCGGDRDKGKRPLMGGIAEQFADRVVLTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ G+      +    R EA+ +AI    +QDV++VAGKGHE   +V N    
Sbjct: 421 PQAIINDILAGLLDAGQALVIPGRAEAVTSAIMQAQEQDVVLVAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG +
Sbjct: 481 YS-DRATVARLLGRL 494


>gi|331671604|ref|ZP_08372402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
 gi|331071449|gb|EGI42806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
          Length = 495

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
 gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
          Length = 487

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/502 (30%), Positives = 265/502 (52%), Gaps = 34/502 (6%)

Query: 3   LQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L+D++YK    +++   ++         I  ++ DSR +    +FVAI G + DGH +I 
Sbjct: 4   LKDILYKVTLDKVLGNTAV--------AIRNINFDSRQVGLDDVFVAIKGVQSDGHDYIK 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           +A+ QGA AI+  +        + I +    + V+++++ L++ A   YG       ++ 
Sbjct: 56  KAVDQGAIAIICET------IPSEIINGITYIQVEDSQEALAIMADNYYGNPSAQIKLVG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++A+ +  +   +G  +  +      +         TTP  + + + L  + 
Sbjct: 110 VTGTNGKTTIATLLYNLFMAAGYETGLLSTVKIMVGKQQYKATHTTPDSLTINRYLREMV 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GV++  +E SSHG+ Q R +G+    G FTNL  DH+DYH+  + Y + K + F++L 
Sbjct: 170 DAGVSYCFMEVSSHGIHQKRTEGLTFAGGIFTNLSHDHLDYHKDFKEYRDVKKKFFDQL- 228

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K + A++ ADD      M    N   + ++   +    H K     +  Q + + ++G+
Sbjct: 229 SKTAFALVNADDKNG---MVMLQNTSAKKVTYALKSMADH-KAQILENQLQGLLLKLDGQ 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +      L G F  YN L        +G+++   L+ +  L  V GRF++  +N++    
Sbjct: 285 ELWVK--LIGNFNAYNVLAIYATAELLGLETIETLQLISTLESVDGRFQYFISNTK-VTA 341

Query: 359 YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VDYAHT ++L+ +L+ I TI +G  ++I V GCGGDRD  KRPIMGKIA  L+  AI T
Sbjct: 342 VVDYAHTPDALKNVLETINTIRTGNEQLITVVGCGGDRDVTKRPIMGKIAAQLSTKAIFT 401

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR+E PE I  +I  G+        +   +R +AI+TA ++ N+ D++++AGKGHET
Sbjct: 402 SDNPRTEQPEAIIEQIEAGVEPIDFKKTLSITDRKQAIKTACQLANENDIILIAGKGHET 461

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              V  GE+    D  I++++L
Sbjct: 462 YQEV-QGERTDFDDYKIVKQLL 482


>gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus
           propionicus DSM 2032]
          Length = 1011

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/500 (32%), Positives = 252/500 (50%), Gaps = 47/500 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + +  ++SDSR +  G +FVA+ G K DG  +IP+AI +G  A        +        
Sbjct: 26  QPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPEAIGKGCLA------VVVDVDEGVDE 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            N P+L+VD+    L   A+   G       ++A+TGT+GK++ +  ++++   SG    
Sbjct: 80  WNVPVLLVDDCPAALGELAAAWNGYPASQMQLVAITGTNGKTTCSWLIEEMLVASGFRPG 139

Query: 146 QIGPTSTISSF------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            IG  +            QD  LTTP P+ L   L  ++  GVTHV +E SSH L Q RL
Sbjct: 140 VIGTVNYRYHGADGLHIIQDAPLTTPDPVTLQGLLRTMADNGVTHVIMEVSSHALQQQRL 199

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-----ADDAYSK 254
              +     FTNL RDH+DYHQ+ + YF AK +LF + L ++  A++          +  
Sbjct: 200 GSTRFDVALFTNLSRDHLDYHQSMEVYFEAKKQLFHKHLKEQGVAVVVLGPQAEGCDWGG 259

Query: 255 EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            +         +V+  G  G   +   ++       +  + + G + +F  PL GE+ V 
Sbjct: 260 LLTASLPAE--QVIRCGLHGSCEVSAHQLTQTMEGFRCCLHLRGAEVNFASPLTGEYNVL 317

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR----GGRIYVDYAHTSNSL 369
           N L AAG+ + +G+     LE L ++  VPGR E V         G  ++VDYAHT ++L
Sbjct: 318 NVLAAAGVGLGLGLVPDRFLEGLARVGRVPGRLERVRLPGEQIGSGPAVFVDYAHTPDAL 377

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + +L+N++ +T+GR++ VFGCGGDRD+GKRP+MG++A  LAD  +VT DNPR+E PE I 
Sbjct: 378 DNVLRNLKKLTTGRLLCVFGCGGDRDRGKRPLMGRVAAQLADAVVVTSDNPRTEAPEAII 437

Query: 430 AEIIHG--------------------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            EI+ G                    + G+    +R  AI  A  +    D +++AGKGH
Sbjct: 438 DEIVAGVEAGGKSRTDAWALLNAAQPVDGYTVIADRRCAITAACSLAAPGDSVLLAGKGH 497

Query: 470 ETVHIVTNGEKKMSVDCDII 489
           ET  I+   EK    D    
Sbjct: 498 ETYQIIGT-EKHFFDDRQEA 516



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 172/509 (33%), Gaps = 55/509 (10%)

Query: 6    LIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
            L++ +   L+   S         ++   V +DSR ++ G IFVA+ G   DGH +I  A 
Sbjct: 520  LLHWNERHLLAATSGKVAGGTLCRVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAA 579

Query: 65   AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTG 122
             Q A AIV             +R     + V ++ + L   A+           + A+TG
Sbjct: 580  EQRAGAIVAE------WMPPRMRPEVLYIEVKDSLRALGDLAAYRRRLLNGTIKVAAITG 633

Query: 123  TSGKSSVASFVQQICQRS--GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            +SGK++V   V  I   +  G  +       T  +F  +N +  P  +   +A   L+  
Sbjct: 634  SSGKTTVKEMVASIFAEALQGSRTGMDAVLKTRGNF--NNLVGLPLSLLPLEAGHRLA-- 689

Query: 181  GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                V +  +  G     +       G   N+   H+    +      AK  LF  + P 
Sbjct: 690  ---VVEMGMNVPGEIARLVAIADPDIGCINNVHPAHLQGLGSLAGVAAAKGELFAGMRP- 745

Query: 241  ESPAIIYADDAYSKEVMKRAHNAG----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            E+  ++  DD + +   K+                +  +    +         + T+ +E
Sbjct: 746  EAVRVVNLDDPHVRAQAKKFAGEQIGFAVTPSGRKFGPQVRATRPDNLGEQGMRFTLHIE 805

Query: 297  GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            G       P+ G   V N + AA +  A GI   ++ + L++      +   V     G 
Sbjct: 806  GWRARVTVPVFGAHNVSNCVAAAAIAHAAGIGPEVIAQGLQRYAPSVDKRLAVTELPGGL 865

Query: 357  RIYVD-YAHTSNSLEMILKNIRTITS-GRIIV-----VFGCGGDRDQGKRPIMGKIALDL 409
            ++  D Y     S+   L+ +      G   +     +   G   +     I   +A   
Sbjct: 866  KVVNDAYNANPASMAAGLRTVAAFGHRGCRHLAALGDMLELGAASEDLHAGIGALVASLG 925

Query: 410  ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE----------MLNKQ 459
             D   +T         +           G  E+  R+ A   A+            L   
Sbjct: 926  YDFLALTG-------MQATVMARAASAAGMKEENIRVFANPRAMADWIYPMLARGDLAAG 978

Query: 460  DVLVVAG-KG-------HETVHIVTNGEK 480
            D L++ G +G        E    + N +K
Sbjct: 979  DWLLIKGSRGMRMEQLLDELEQRLNNSKK 1007


>gi|26246018|ref|NP_752057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227885010|ref|ZP_04002815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
 gi|30316044|sp|Q8FL67|MURE_ECOL6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|26106415|gb|AAN78601.1|AE016755_101 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227837839|gb|EEJ48305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
          Length = 495

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
 gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
          Length = 921

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/495 (33%), Positives = 245/495 (49%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P L + L    +Q     + +++ DSR   +G +F+AI G++ DG  +IPQAIAQG  A+
Sbjct: 430 PNLSDLLGALGIQAPSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIPQAIAQGVSAV 489

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +               PI+ +DN    LS  A   Y +  E   ++ VTGT+GK++ 
Sbjct: 490 LAEAQDVATHGEIRESHGIPIIYIDNLNAKLSKLAGHFYHQPAEKLKLIGVTGTNGKTTT 549

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G  S  +G     +         TT S + +   L  L +QG T  ++E
Sbjct: 550 TQLLAQWAQGLGEISAVMGTVGNGLLDHVVPAMNTTGSAVDIQLELQQLLNQGATLTAME 609

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +A  FTNL RDH+DYH     Y  AK  LF          II A
Sbjct: 610 VSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEEAKWLLFS--THHSGEKIINA 667

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DDA  ++ + R  +A        L   +QG+F+   ++        +  S    +     
Sbjct: 668 DDAVGQKWLSRLPDAVAVTMENTLPQNWQGRFVKTTRINYHDAGATIHFSSSWGEGIIES 727

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N L A    +A+G     V+     L  V GR E    N+R   + VDYAH
Sbjct: 728 PLMGAFNVSNLLCALATLLALGYPLNAVINASSSLTPVCGRMEVFSANNR-PTVIVDYAH 786

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG +A +LAD  ++TDDNPRSE+
Sbjct: 787 TPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAVAEELADKVVITDDNPRSEE 846

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ G+      I    R EA+   I   +  D+++VAGKGHE   +V +    
Sbjct: 847 PQAIIQDILSGLMDPGRAIAIEGRAEAVTNVIMQADTNDMILVAGKGHEDYQLVGSRRLD 906

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 907 YS-DRLTVARLLGVI 920


>gi|333011473|gb|EGK30887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-272]
 gi|333021716|gb|EGK40965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-227]
          Length = 495

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 257/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T + 
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAAG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|312966213|ref|ZP_07780439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|312289456|gb|EFR17350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
          Length = 495

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|110640298|ref|YP_668026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|191174585|ref|ZP_03036079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|306815317|ref|ZP_07449466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|331661131|ref|ZP_08362063.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
 gi|110341890|gb|ABG68127.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|190905132|gb|EDV64777.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|222031916|emb|CAP74654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Escherichia coli LF82]
 gi|305850979|gb|EFM51434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|312944691|gb|ADR25518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|331052173|gb|EGI24212.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
          Length = 495

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|331650982|ref|ZP_08352010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
 gi|284919865|emb|CBG32920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli 042]
 gi|331051436|gb|EGI23485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
          Length = 495

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|331661459|ref|ZP_08362383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
 gi|331061374|gb|EGI33337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
          Length = 495

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|218703345|ref|YP_002410864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UMN026]
 gi|293403157|ref|ZP_06647254.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298378687|ref|ZP_06988571.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
 gi|218430442|emb|CAR11308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|291430072|gb|EFF03086.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298281021|gb|EFI22522.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
          Length = 495

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLSDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   + +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLSDLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
 gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
          Length = 487

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 255/501 (50%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++Y+   E +       +      I +V  DSR      +FVAI G + DGH +I +
Sbjct: 4   LKDILYRVTLESV-------VGNTAIAITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+AQGA AI+        +    I +    + V +T   L+  AS  YG       ++ +
Sbjct: 57  AVAQGALAIICE------EMPQQIVNGITYVKVADTSSALATIASNYYGNPSANLKLIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++AS + Q+ +++G  +  +      + +       TTP  + + K L+ +S+
Sbjct: 111 TGTNGKTTIASLLYQLFKKAGYKTGLLSTVKIMVDTIEHKATHTTPDSLTINKYLAEMSA 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV +  +E SSHG+ Q R +G+    G FTNL  DH+DYH+T   Y + K + F+EL P
Sbjct: 171 AGVEYCFMEVSSHGIHQKRTEGLHFEGGIFTNLSHDHLDYHETFAEYRDVKKKFFDEL-P 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K + A++  DD     ++    N   + ++   +    +  ++          + ++ +D
Sbjct: 230 KTAFALVNNDDKNGPVMV---QNTKAKKVTYALKSYADYRAQILENQLSG---LLLKVQD 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F  YN L        + +D    L+ L +L  V GRF++  +        
Sbjct: 284 QEVWVKLIGSFNAYNLLAIFAAAELLELDQMEALQLLSELESVSGRFQYFISEGN-VTAI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I  I +    +I V G GGDRD  KRP MG IA  L+  AI+T 
Sbjct: 343 VDYAHTPDALKNVLETINDIRTKNEELITVIGAGGDRDTTKRPKMGNIASALSTKAIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPRSE+PE I  +I  G+        +   +R +AI+TA ++ N  D++++AGKGHET 
Sbjct: 403 DNPRSENPEAIIEQIEAGVEPIHYKRILSITDRKQAIKTACQLANAGDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + NGE+    D  I++E L
Sbjct: 463 QEI-NGERFDFDDYKIVQETL 482


>gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 496

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/505 (32%), Positives = 239/505 (47%), Gaps = 29/505 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L   +  +FP L+   +   +         + SDSR I+AG IF+A  G   DG  +IP 
Sbjct: 5   LSPPLATNFPPLLCANAAGRL---------LHSDSRQIKAGDIFLACQGEYADGRSYIPA 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH------PEN 116
           AIA GA  +      +   F      N P   + + +    + A+RLYG        P  
Sbjct: 56  AIANGASFVFWDDDGA---FQWNPEWNVPNQGIKDLKHRAGILAARLYGNVSDGLSSPLK 112

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           I  VTGT+GK+S+  ++ Q     G  +  IG          +D   TTP+P+ +   L 
Sbjct: 113 IWGVTGTNGKTSITQWLAQAAGLLGDKTAIIGTVGNGFWGALEDTTHTTPAPVEVQSLLH 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               QG T  ++E SSHGLDQ R++G+      FTNL RDH+DYH T +AY   K RLF 
Sbjct: 173 RFRKQGATAAAMEVSSHGLDQARVNGVPFQTAVFTNLTRDHLDYHGTMEAYGAIKSRLF- 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
                   A+I +DD Y  E++ R  A      V S G+ +   I +    A  +  +V 
Sbjct: 232 -YWRGLKHAVINSDDPYGAELIGRLKADRPDLAVYSYGFGEQADIRITGFAAASDGMEVA 290

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +            L G F   N     G+  A G     VL  LEK+    GR + +  +
Sbjct: 291 LDTPWGKGSVKTRLLGRFNAQNLAACVGVLCADGHPLDKVLAALEKIRPATGRMDCIIES 350

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +   + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  A
Sbjct: 351 GK-PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGA 409

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D  +VT DNPR E+P  I A+I+  +P     + +R  AI  A++     D++++AGKGH
Sbjct: 410 DKVVVTSDNPRLENPADIIADILPAVPAPECVEADRKAAIGFAVKNAASDDIILIAGKGH 469

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           ET   V  G K    D +  +  L 
Sbjct: 470 ETYQDVA-GVKHHFSDFETAQAALA 493


>gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
 gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
          Length = 485

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/499 (30%), Positives = 255/499 (51%), Gaps = 26/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL+              P+ +    ++ +  DSR +  G +FVA+ G   DG  +I
Sbjct: 1   MQLRDLLPP-----------LPITFPNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENIL 118
             AIA GA AI+                    + +   ++ LS  A R +        ++
Sbjct: 50  NTAIAAGARAILAE----GSSLRYEENGGAVCVFMPGVKEQLSEIAGRFFNHPSRHATLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV     Q+ ++ G ++  IG T + +       + TTP  + + + LS L
Sbjct: 106 GVTGTNGKTSVTHLAAQLAEKLGYTAAVIGTTGSGLIGQLLPEKHTTPDAVTVQQRLSTL 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G   +++E SSH L Q R++ ++      TN+ RDH+DYH +   Y +AK RLFE+ 
Sbjct: 166 VAEGADFIAMEVSSHALVQRRVEALRFDTAVATNISRDHLDYHGSMAHYVDAKRRLFEDF 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             + +  +I  DD Y ++ ++ A N     L  G+    I +  +    +    T++ EG
Sbjct: 226 --ELNHRVINLDDRYLRDWLEGASNGLSISLQ-GHSRANIQVSDLAFAEHGTTFTLAYEG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++  F  PL G F VYN + A  + +A       + +H   L  VPGR E     S    
Sbjct: 283 REAQFSTPLLGRFNVYNVVSAVAIMLAQKQSLTAIAQHCRHLSPVPGRMEAFQAGS-SAL 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L+ +L+ +R    G++  VFGCGGDRD+GKRP MG++A + AD  +VTD
Sbjct: 342 VVVDYAHTPDALQQVLQALRLHCKGKLWCVFGCGGDRDRGKRPQMGQVAAEFADRVVVTD 401

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+E P++I A+I+ GI    +  +   R +A+   IE     DV+++AGKGHE   +
Sbjct: 402 DNPRTEAPQQIIADIMAGIADKRKVHSMEGRRQAVLDTIERAAPDDVVLLAGKGHEDYQV 461

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       +  I+++ +
Sbjct: 462 IGHERIDY-NERQIVQDWI 479


>gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
 gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
          Length = 495

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/493 (33%), Positives = 256/493 (51%), Gaps = 10/493 (2%)

Query: 9   KDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ELI   L +         I+ +  DSR I++G  FVAI G+  DG  FI +AIAQG
Sbjct: 5   KALSELIAPWLELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++  +     +     R   P++ +    + LS  A RLYG H   ++ VTGT+GK+
Sbjct: 65  ANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++   + Q  +  G  S  +G T     +  +    TT + + +   L  L+ +G  + S
Sbjct: 125 TITQLIAQWLELLGHKSAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTS 184

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL Q R+  +  +AG F+NL RDH+DYH T  AY  AK  LF E   +   AII
Sbjct: 185 LETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AII 242

Query: 247 YADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DDA   + +K+  H  G  +L+     + I  ++V    +   +       + +   P
Sbjct: 243 NVDDAVGAQWVKQLPHAIGVSLLAQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAP 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF   N L+A    +++G + + +L    +L  V GR E      +  ++ VDYAHT
Sbjct: 303 LIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQK-AKMVVDYAHT 361

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ +    +G++  +FGCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P
Sbjct: 362 PDALEKALRALHVHCTGQLWAIFGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESP 421

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I A+++ G+        + NR +A   A++    QD++++AGKGHE   ++ N     
Sbjct: 422 QAIVADMLAGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKGHEDYQVLANETIHY 481

Query: 483 SVDCDIIREILGL 495
           S D +  +++L L
Sbjct: 482 S-DRETAQQLLEL 493


>gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha153]
          Length = 492

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 229/501 (45%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKFWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKR +MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 492

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKFWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFRT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ LEK+    GR + +  NS  
Sbjct: 290 PWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKR +MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|50122742|ref|YP_051909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|81643886|sp|Q6D0H8|MURE_ERWCT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49613268|emb|CAG76719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 495

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/495 (34%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +        + E+  DSR   AG +FVAIVG+K DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVQDAPACALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           V  +     D +       P++ + +  + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  VAEADGEAADGTVREMHGVPVVYLSSLNQRLSALAGRFYQQPAEKLQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G  S  +G     +   A     TT S + + + LS L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGEMSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +   A  FTNL RDH+DYH   ++Y  AK  LF E   +    II A
Sbjct: 184 VSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWLLFAE--HRVGQMIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD      + +  +A    +      G +G+++   ++    N   +         +   
Sbjct: 242 DDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGQGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +++G     ++    +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV++VAGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 481 YS-DRITVARLLGVI 494


>gi|300715303|ref|YP_003740106.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
 gi|299061139|emb|CAX58246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
          Length = 471

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 238/472 (50%), Gaps = 14/472 (2%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR   +G +FVAI G+  DG  FIPQAIAQG  A++  +    +D   T     P++ 
Sbjct: 3   LDSREAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIADAEGEAEDGDITEMHGVPVIY 62

Query: 95  VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +    + LS  A R Y +  +   ++ VTGT+GK++    + Q  Q  G +   +G    
Sbjct: 63  LAQLSQRLSALAGRFYQQPGDKLRLIGVTGTNGKTTTTQLLAQWGQLLGETGAVMGTVGN 122

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +         TT S + + + L  L  QG T  ++E SSHGL QHR+  +   A +FTN
Sbjct: 123 GLYGHLVPAENTTGSAVEVQQTLHSLVEQGATLAAMEISSHGLVQHRVAALPFAAAAFTN 182

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV---- 267
           L RDH+DYH     Y  AK  LF E   +    I+ ADD   +  +++  +A        
Sbjct: 183 LSRDHLDYHGDMARYEAAKWLLFSE--HQVGQIIVNADDEVGRRWLQKLPDAVAVTMEDN 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +  G  G+++   +V    N  ++       + +    L G F V N LVA G  +A+G 
Sbjct: 241 IDPGCHGRWLQATEVDYHDNGAKIRFDSSWGEGEIESRLMGAFNVSNLLVALGTLLALGY 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               ++    +L  V GR E      +   + VDYAHT ++LE  L+  R   +G++  V
Sbjct: 301 PLDSLIATGNQLQPVTGRMEVFSAPGK-PTVVVDYAHTPDALEKALEAARLHCTGKLWCV 359

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GN 444
           FGCGGDRD+GKRP+MG IA   +D+ ++TDDNPRSEDP  I A+I+ G+           
Sbjct: 360 FGCGGDRDKGKRPLMGAIAEQFSDVVVITDDNPRSEDPAAIVADILSGLLDAGRARVMPG 419

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R +A+   +    + D+++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 420 RAQAVTNTVMQAQEGDIVLVAGKGHEDYQIVGNRRLDYS-DRITVARLLGVI 470


>gi|170021559|ref|YP_001726513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ATCC 8739]
 gi|188493001|ref|ZP_03000271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
 gi|169756487|gb|ACA79186.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli ATCC
           8739]
 gi|188488200|gb|EDU63303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
          Length = 495

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +   ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 493

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/507 (29%), Positives = 240/507 (47%), Gaps = 30/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ ++ KD P       +     +E +I+ + ++S+ I  G +F+A  G K DG  +I
Sbjct: 1   MKLKKVL-KDIP------VVQVKGSKEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+AI  GA AIV        D           ++  N  +    F++  Y    + +  +
Sbjct: 54  PEAINHGATAIVT-------DIYDPSFKEITQIICKNVAEVEGRFSANFYQMPSQELFIV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  V+ + ++  L    IG    I   +      TTP        L  +
Sbjct: 107 GITGTNGKTTTSFLVKYLLEQLNLPCGLIGTIEYILGRYRYKASHTTPDVHSNHHMLREM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG     +E +SH LDQ R++ I      +TNL +DH+DYHQ  + Y  AK +LF +L
Sbjct: 167 VHQGCQAAVMEVTSHALDQKRVEHIDYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQL 226

Query: 238 ----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
                 K    I   D  + + ++K        + + G      +             + 
Sbjct: 227 DQVPSKKSKQIIANLDCPWFETILK---GIKTPIFTFGIDSPADLRACPTSFGPTGTHID 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G+ +   FPL G F +YN L A  + +   I    ++   ++    PGR E +  N
Sbjct: 284 LHYQGRSYSTFFPLIGRFNIYNCLAAIAVGLTRKITLEKLISLAQQFPPPPGRLEPIQ-N 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                ++VD+AHT ++L   L+ +  +  G+II VFGCGGDRD+ KRP M + +   +D+
Sbjct: 343 DLDLNLFVDFAHTEDALYKALECLSELKKGKIITVFGCGGDRDKTKRPKMAQASASFSDL 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            IVT DNPRSEDP KI  EI  G      +I + +R  AI  AIE  N  D+++VAGKGH
Sbjct: 403 TIVTSDNPRSEDPLKIIQEIAEGFSLQDNYIVQPDRFSAIAFAIEKANPGDIILVAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           ET  I  +   +   D  I +EI   +
Sbjct: 463 ETTQIFAHHTIE-FDDRKIAQEICAKM 488


>gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 956

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/468 (30%), Positives = 232/468 (49%), Gaps = 17/468 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I+ G IFV I G   DGH FI  A+ +GA AI+V    +        + + P 
Sbjct: 38  VQTDNRKIKPGDIFVCIQGANFDGHNFINSALEKGA-AIIVCREIN--------KRDIPY 88

Query: 93  LVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + V +TRK  ++ A    L  K P  ++ +TGT+GK++ +  + +  +  G     IG  
Sbjct: 89  IKVKDTRKAAAVIARTVMLPQKIPYTLIGITGTNGKTTTSLLLYEALRNLGFRCGWIGTL 148

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              I   A  +  TTP  I L +    +    V +V +E SSH L   R+ G+K     F
Sbjct: 149 GYYIEGKAFPSERTTPDIIELNEIFGQMIEAKVDYVVMEVSSHSLSLDRIYGVKFDYCLF 208

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +NLGRDH+D+HQT + Y  AKM  FE+     S ++I   DA+  ++         +V S
Sbjct: 209 SNLGRDHLDFHQTLENYGKAKMSFFEQGAKDGSISVINTADAFGVQIKDMLKEKQAKVYS 268

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +G          +    N     +  E  +      L G F + N  +      A+G   
Sbjct: 269 LGGNDAEFQYSDIKTDINTSSFKLIAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFSP 328

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   L+ +  V GR E V  N+    I++DYAHT  +++ +LK +  +   RI+ + G
Sbjct: 329 EAIHNSLKDIPPVQGRLERV-ENNFNIGIFIDYAHTPEAIDNVLKAVEDLPHKRILCLIG 387

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRI 446
            GGDRD+GKRP+M K AL+ +D+ I++DDNPRSE+PE+I  +I+     F+      NR 
Sbjct: 388 AGGDRDKGKRPLMLKSALNHSDVVIISDDNPRSENPERIIKDIVSSSDIFLPWWIIRNRQ 447

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AI + I +  ++D++++ GKG E    +  G +    D +   + L 
Sbjct: 448 QAISSIIRLAQEEDIVLICGKGSEDYQEIE-GVRHHFNDREETLKALA 494



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 150/442 (33%), Gaps = 45/442 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N +S DSR I+ G +F+AI G K DGH ++   +       +    Y L  FS       
Sbjct: 537 NYLSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLNQFS----EEN 592

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
               V+N  + + L   +     P   +A+TG++GK++    + Q+ Q S      +   
Sbjct: 593 SYYQVENCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSAPVLKTLANE 652

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + I    +      P              Q      +  +  G      D      G   
Sbjct: 653 NNIIGLCKTIIRIKP-------------EQQYAIFELGTNHFGEIAALADVANPDIGIIL 699

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H++Y   ++  F  K+ LF+  L   +  +   DD     +           +S+
Sbjct: 700 NIGPSHLEYFGDEEGVFREKITLFKRPL---ALRLYPGDDFRFDYLANEG-------ISI 749

Query: 271 GY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           GY +     + +     + Q   ++   +D  F  P        N+  A  L + +GID 
Sbjct: 750 GYNENSDYRITRHKCNKDNQSFYLN---EDLWF-LPYGAPHYAINSAFAIVLGLKLGIDK 805

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV--- 386
             +   L K   +  R + V     G  I   Y     S++  L+  + +   +      
Sbjct: 806 EKMQTALNKPIQLELRNQ-VEKRGTGLLILDCYNANPYSMQKALEYWQELNPEQPHYAIL 864

Query: 387 --VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
             +   G       + I   +A    +      +  R   PEK    I H         +
Sbjct: 865 GDMLELGESSILYHQMISAMLAEMRYEKLYTVGNYSRIYHPEKESP-IFHYNTVEELIAD 923

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
           R       +  L +  +++V G
Sbjct: 924 RK------LNSLPENAIILVKG 939


>gi|332095376|gb|EGJ00399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 5216-82]
          Length = 495

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +   ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIDSHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VF CGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFSCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
 gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
          Length = 491

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/500 (33%), Positives = 246/500 (49%), Gaps = 25/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++          +        + +I  ++ D+R +Q G +F  + G   DGH F 
Sbjct: 1   MKLLDVMGS-----AETVPTLATPAGDVEIAALAYDNRKVQPGTLFFCVPGFTRDGHDFA 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+A+GA A+VV     L           P L V + R  ++  A+   G     +  +
Sbjct: 56  PDAVARGAVALVVERPLGL---------GVPELRVASVRAAMARAAANFNGDPTARLQTV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A  V+ + + +G  +  +G     +   A++ + TT   I L   L  +
Sbjct: 107 GVTGTNGKTTTAFLVRGLLEAAGRQTGLLGTVKAVVGGEAREVQRTTAEAIELQADLRAM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G    ++E SSH L+ HR D ++  A  FTNL +DH+D+H T + YF AK RLFE  
Sbjct: 167 LDGGDVAAAIEVSSHALELHRADAVRFAAAIFTNLTQDHLDFHPTMEDYFLAKRRLFE-- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                 A++  DD Y + + +     G  ++++           ++         T    
Sbjct: 225 -TGPGVAVVNVDDPYGRRLAEELRADGAALVTIALDHDADYRATELTTGLTGSAFTAQTP 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG F V N L A     A+G+    +   L +   VPGRFE V    +G 
Sbjct: 284 QGPIALRTPLPGRFNVQNVLGAVAAVRALGVPLEQIAAALPQAGRVPGRFEPVD-EGQGF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SL+ +L+  R +T  +++ VFGCGGDRD+ KRP+MG IA  LAD A VT
Sbjct: 343 AVLVDYAHTPDSLDNVLQAARGLTERQVLTVFGCGGDRDRTKRPLMGGIAARLADEAYVT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPRSEDPE+I  +++ G    P    + +R +AI  A+   +  DVLV+AGKGHE   
Sbjct: 403 SDNPRSEDPEQILRDVVEGTGTGPHVHVEVDRRKAIFAAVAAAHDGDVLVIAGKGHEQGQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
               GEK    D  + RE L
Sbjct: 463 EFAGGEKLPFDDVTVAREAL 482


>gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis 961-5945]
 gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis G2136]
          Length = 492

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 230/501 (45%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEISSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E+  R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKR +MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|323181782|gb|EFZ67195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1357]
          Length = 490

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/491 (34%), Positives = 252/491 (51%), Gaps = 14/491 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +
Sbjct: 3   DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
                D         P++ +    + LS  A R Y +  +N+  + VTGT+GK++    +
Sbjct: 63  KDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +S  +G     +         TT S + +   L+ L  QG T  ++E SSH
Sbjct: 123 AQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E       AII ADD  
Sbjct: 183 GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEV 240

Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  + +  +A        ++    G+++    V    +   +  S    D +    L G
Sbjct: 241 GRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++
Sbjct: 301 AFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I
Sbjct: 360 LEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAI 419

Query: 429 RAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N     S D
Sbjct: 420 INDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-D 478

Query: 486 CDIIREILGLI 496
              +  +LG+I
Sbjct: 479 RVTVARLLGVI 489


>gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 495

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 250/503 (49%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+          L+  P   ++ +I  +S D+R +  G +FVA+ G K DG L+I
Sbjct: 1   MKLWQLLAGV------PLTGEPYS-QDMEITSISYDTRTLLPGALFVALPGAKTDGSLYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +A+A+GA A+V       +                + R+ L+L A   +G       ++
Sbjct: 54  DEALAKGAAAVVCRRRPQREGV---------FFTTPDPRRALALLAENWFGHPGREMTLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKAL 174
            VTGT+GK++    ++++ +  G    Q+G   TI +           TTP    + + L
Sbjct: 105 GVTGTNGKTTTTFLIKEMLE--GALKTQVGLIGTIQNMVGERVLPAHRTTPESYEVQQLL 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++  G THV +E SSH L QHR++G+     +FTNL +DH+DYH T + Y +AK RLF
Sbjct: 163 REMADSGCTHVVMEVSSHALVQHRVEGLDFSVAAFTNLTQDHLDYHHTMEEYRSAKERLF 222

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +       A++  DD   +   +R         S       +  K +     + +    
Sbjct: 223 HQC----RRAVLNLDDEAGRWYRERL-ACPVFTYSENKDQADLTAKGIRLYPGQVEFEAV 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +      P+PG F +YNAL A  + + +G+  +     L     V GR E V   + 
Sbjct: 278 AREQIQRVFLPIPGGFTIYNALCALSVGLCLGLRLSECAAALRSARGVKGRVEVVPVPT- 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAH+ N+LE IL   R  T+GR+I +FGCGGDRD+ KRPIMG +  +LAD+A+
Sbjct: 337 AYTVLIDYAHSPNALENILLTARDFTAGRLICLFGCGGDRDRTKRPIMGDVVKELADLAV 396

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           VT DNPR+EDPE I  +I+ G+ G       + +R +AI  A+      DV+V+AGKGHE
Sbjct: 397 VTSDNPRTEDPEDIIRDILAGMEGEGAQIHVEPDRRQAIAWALSQGRPGDVIVLAGKGHE 456

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  G +    + +I+ +  
Sbjct: 457 TYQEI-QGVQYPMDEREIVAQYF 478


>gi|16128078|ref|NP_414627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|89106968|ref|AP_000748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K-12 substr. W3110]
 gi|170079724|ref|YP_001729044.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238899486|ref|YP_002925282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|127538|sp|P22188|MURE_ECOLI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|581032|emb|CAA38862.1| UDP-MurNac-tripeptide synthetase (MurE) [Escherichia coli]
 gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|21321966|dbj|BAB96653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K12 substr. W3110]
 gi|169887559|gb|ACB01266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863753|gb|ACR65751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|260450708|gb|ACX41130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli DH1]
 gi|315134779|dbj|BAJ41938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli DH1]
          Length = 495

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Legionella longbeachae NSW150]
          Length = 483

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 163/500 (32%), Positives = 239/500 (47%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     + I           +  I  + +DSR I  G +F+A  G   DG LFI
Sbjct: 1   MKLSQLLKPWMKQSI----------MDCLITGLENDSRRIHPGDLFIAYAGAAADGRLFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A++ GA A+    A      +  +  + P + V      L   A + Y       NI 
Sbjct: 51  DNAVSSGAVAVAYDPADFP--LNCVLPESVPCIPVPELSTQLPNIAKQFYDNPACFLNIT 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A  + Q     G  +  IG     + +  +    TTP  + L K L   
Sbjct: 109 GVTGTNGKTTIAYQLAQAHHLLGQKAAYIGTIGQGNVNELRLVDNTTPDSLCLQKLLHQY 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            SQ +  V +E SSH L QHR+D ++     FTNL  DH+DYH + + Y  AK  LF   
Sbjct: 169 KSQDMRQVCMEVSSHALAQHRVDALEFNQAIFTNLTLDHLDYHHSMENYARAKSLLFAR- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
                 AII  DDAY K +M  A     + L+ G      +  K         ++ +   
Sbjct: 228 -ESLEWAIINQDDAYHK-IMAAAIKPQVKKLTYGIHQDCDVRAKNWSMDIYGTEIEVHSP 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                      G+F +YN+L      +A       V++ + +L   PGR E V   +   
Sbjct: 286 WGKHHIKIKSLGQFNIYNSLAIFSSLLAANYIPEQVVDVMAQLKAAPGRMEIV---AHSP 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE  L  +  +  GR+ VVFGCGGDRD+ KRPIMGK+A  LAD  ++T
Sbjct: 343 YVLVDYAHTPDALENALMTLNQLKKGRLWVVFGCGGDRDKTKRPIMGKVADKLADEIVIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E+P+ I  EI  GI      I+  NR EAI  A++  ++ DV+++AGKGHE+  
Sbjct: 403 SDNPRTEEPQIIINEISKGIALSTKVIQLVNREEAIAYALDKADENDVILIAGKGHESYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            +    K    D D++R ++
Sbjct: 463 QIGT-VKHQFSDQDVVRSLI 481


>gi|323950919|gb|EGB46796.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H252]
          Length = 495

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L  L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELVGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|307551929|gb|ADN44704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli ABU 83972]
          Length = 490

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/491 (34%), Positives = 250/491 (50%), Gaps = 14/491 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +
Sbjct: 3   DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
                D         P++ +    + LS  A R Y +  +N+  + VTGT+GK++    +
Sbjct: 63  KDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G  S  +G     +         TT S + +   L+ L  QG T  ++E SSH
Sbjct: 123 AQWSQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+         AII ADD  
Sbjct: 183 GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA--HHCGQAIINADDEV 240

Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  + +  +A        ++    G+++    V    +   +  S    D +    L G
Sbjct: 241 GRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++
Sbjct: 301 AFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I
Sbjct: 360 LEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAI 419

Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N     S D
Sbjct: 420 INDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-D 478

Query: 486 CDIIREILGLI 496
              +  +LG+I
Sbjct: 479 RVTVARLLGVI 489


>gi|24111530|ref|NP_706040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 301]
 gi|30061652|ref|NP_835823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 2457T]
 gi|46577006|sp|Q83MG0|MURE_SHIFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24050288|gb|AAN41747.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039894|gb|AAP15628.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str.
           2457T]
 gi|281599447|gb|ADA72431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Shigella flexneri 2002017]
 gi|332762354|gb|EGJ92621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2747-71]
 gi|333010581|gb|EGK30014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri VA-6]
 gi|333022338|gb|EGK41576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-304]
          Length = 495

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGGI 494


>gi|194434409|ref|ZP_03066671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|194417325|gb|EDX33432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|320179647|gb|EFW54596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella boydii ATCC 9905]
          Length = 495

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIDSHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
          Length = 487

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/501 (29%), Positives = 247/501 (49%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++YK     +       +      +  +  +SR +    +FVAI G+  DGH +I  
Sbjct: 4   LIDILYKVTINAV-------VGTTNVYVRNIHFNSRSVAVNDLFVAIKGSVVDGHDYIEN 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI QGA A+V            T++     +VV+++   L++ AS  YG       ++ V
Sbjct: 57  AIKQGAIAVVCE------YLPKTLKEGISYIVVEDSSIALAIMASNYYGNPSSNLKLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++AS + Q+ +++G     +      + +       TTP  + + + LS +++
Sbjct: 111 TGTNGKTTIASLLFQLFKKAGYKVGLLSTVVIKVDNKDYKATHTTPDSLTINRYLSEMNN 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GV    +E SSHG+ Q R  G+    G FTNL  DH+DYH+T   Y + K   F+ L  
Sbjct: 171 EGVEFCFMEVSSHGIHQKRTQGLDFAGGIFTNLSHDHLDYHETFAEYRDVKKSFFDNL-S 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + A+  ADD     ++    N   +    G +    +  ++        +   ++  D
Sbjct: 230 SSAFALTNADDKNGAIML---QNTKAKQYKYGLKNYANYKAQILENSFSGML---LKIND 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D    L G F   N L        +G++   +L  + +L  V GRF+++ +        
Sbjct: 284 SDVWTRLIGGFNASNVLAIYATAELLGLEKTEILRLISELESVSGRFQYLISEEN-ITAI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I +I +    +I V GCGGDRD  KRP MG IA  L+  AI T 
Sbjct: 343 VDYAHTPDALKNVLETINSIRTKNEELITVIGCGGDRDATKRPKMGHIASALSTKAIFTS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+E PE I  +I  G+        +   +R +AI+TA ++ N  D++++AGKGHET 
Sbjct: 403 DNPRTEVPELIIEDIEKGVEPQNFKKTLSIVDRKQAIKTACQLANAGDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + NGE+    D  I++ +L
Sbjct: 463 QEI-NGERTDFDDFKIVKNLL 482


>gi|170768391|ref|ZP_02902844.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
 gi|170122495|gb|EDS91426.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
          Length = 495

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/495 (34%), Positives = 253/495 (51%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R + E++ DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVPGAPSRALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  +N+  + VTGT+GK++ 
Sbjct: 64  IAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L  QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++   +V    +   +  S    D +   
Sbjct: 242 DDEVGRRWLAKLPDAVAVSMEDHINSNCHGRWLKAIEVNYHDSGATIRFSSSWGDGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 HLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N    
Sbjct: 421 PRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 481 YS-DRVTVARLLGVI 494


>gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Neisseria meningitidis H44/76]
 gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis CU385]
 gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis H44/76]
          Length = 492

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/501 (30%), Positives = 230/501 (45%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 122 --GTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
             GT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VAGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  A+R A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAVRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
 gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
          Length = 457

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 163/472 (34%), Positives = 248/472 (52%), Gaps = 25/472 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ +S+ +  G+IFVAI G   DGH F+ +A+ +GA  + V     ++D       
Sbjct: 2   EVKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKDVGIEDP------ 55

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I+ V +TRK L       YG+  E +  + VTGT+GK++    ++ + + +G+    
Sbjct: 56  --RIVKVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGIKVGL 113

Query: 147 IGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG           +    TTP P+     L  +   G   V  E SSH L Q R+ G K 
Sbjct: 114 IGTIYYRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWGTKF 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH   + YF+AK+ LF +    +  ++I ADD Y K ++       
Sbjct: 174 FTTIFTNLSQDHLDYHGDMENYFSAKLLLFTQ--YPQEFSVINADDPYGKRIVSVVGK-- 229

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R  + G +G    +          ++ +  EGK + F   L GEFQ YN   A      
Sbjct: 230 -RARTYGKEGDL-RITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILTAFL 287

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            GID  +V E ++ +  VPGRFE       G  + VDYAHT ++LE +L+  R IT GR+
Sbjct: 288 RGIDPQVVEEGVKDVR-VPGRFE--TYRKDGKTVIVDYAHTPDALEKLLRTARGITRGRL 344

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441
           +VVFG GG+RD+ KRP+MG++A + AD+ ++T DNPR EDP  I  +I+ GI      + 
Sbjct: 345 LVVFGAGGNRDRTKRPLMGEVAQNWADVIVLTSDNPRWEDPISIIEDIMEGISQKNKVLV 404

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + +R +AIR A+EM  + DV+V+AGKGHE    +  G +    D  ++REIL
Sbjct: 405 EPDREKAIRLAVEMAKEGDVVVIAGKGHEDYQEIK-GVRYPFSDSAVVREIL 455


>gi|110804149|ref|YP_687669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613697|gb|ABF02364.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 5 str. 8401]
          Length = 495

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/503 (34%), Positives = 254/503 (50%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             IV N     S D   +  +LG
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLG 492


>gi|312173527|emb|CBX81781.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 495

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/495 (31%), Positives = 242/495 (48%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +G +FVAI G+  DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWVPGAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +  +  D         P++ +    + LS  A R + +      ++ VTGT+GK++ 
Sbjct: 64  IAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +   +G     +         TT S + +   L+ L  +G +  ++E
Sbjct: 124 TQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A +FTNL RDH+DYH     Y +AK  LF E   +   AII A
Sbjct: 184 ISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTE--HQVGQAIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +++  +A        L  G  G+++   KV        V  +    D     
Sbjct: 242 DDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHIDS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++    + +     +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPR E+
Sbjct: 361 TPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRGEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R +A+   +    + D+++VAGKGHE   I+ +    
Sbjct: 421 PAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFD 480

Query: 482 MSVDCDIIREILGLI 496
            S D D +  +LG++
Sbjct: 481 YS-DRDTVARLLGVL 494


>gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
 gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
          Length = 486

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/490 (30%), Positives = 242/490 (49%), Gaps = 24/490 (4%)

Query: 10  DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  EL+  +    ++    + I  ++ DSR I+A   F+ I G   DGH F  QA  QGA
Sbjct: 2   NSKELLASIPYKQVKGPLPEHIEHLTIDSRDIKANSAFICIKGYTVDGHDFAQQAANQGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
             I+     ++         N  ++ V++T + L L A++ Y    +  +++ VTGT+GK
Sbjct: 62  TLIITEKPMTI--------DNATVVEVESTSRTLGLLAAKFYDYPSKLLHMIGVTGTNGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SVA  +  +    G  S   G     ++     +  TT   +   + ++    +  +H+
Sbjct: 114 TSVAGILHSMLMELGEKSALTGTIGFNLNGQLHPSANTTNDVLTTQQMIARARDEDCSHM 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKES 242
           ++E SSHGL   RL G++     FTNL  DH+D+H T + Y +AK  LF +L   L  + 
Sbjct: 174 TMEVSSHGLVLGRLAGVEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQLGQDLANQK 233

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFD 301
            AI+ ADD +SKE+ K   +    V + G Q       K +  +H     T++    +F 
Sbjct: 234 QAILNADDPWSKELAKMTPHP---VYTYGIQNDAQFQAKNIQLMHTGTSFTLTCVEGEFP 290

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L GEF V NAL +     A G     +L+ L K+  V GR + V   +    I++D
Sbjct: 291 VTMKLLGEFNVSNALASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEA-PISIFID 349

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT +++E  +  ++     RII + G GG+RD+ KRPIM   A  +AD  ++T D+PR
Sbjct: 350 YAHTPDAIEKAIDAVQDFKKSRIIFLVGTGGNRDKTKRPIMAAKA-SIADYVVLTTDDPR 408

Query: 422 SEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            E  + I  ++  G+    F   G+R +A+  A+E     D++++AGKGHE   I+ N  
Sbjct: 409 DEAYDSILGDLEVGMTHSNFACIGDRAKAVEHAVEQAEAGDIIILAGKGHEDYQIIGN-T 467

Query: 480 KKMSVDCDII 489
           K    D +I 
Sbjct: 468 KYPHSDKEIA 477


>gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
 gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
          Length = 497

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/499 (32%), Positives = 252/499 (50%), Gaps = 16/499 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +L+ K  P +I    I   +    ++  +S++S   +   IF+ + G + DG  F  
Sbjct: 3   KLYELLKK-VPSIIE---IPTHKALNEEVKGISTNSHSCKQEEIFIGMPGTRVDGGEFWQ 58

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AI  GA A+V+S   +++     +     +++V++     S  A+  Y    E   ++ 
Sbjct: 59  SAIKAGAVAVVISPQAAIKFPINDLH---CVIIVEDVILTASEIATAFYSYPSEDIKMIG 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++        ++  IG   S  + F Q +  TTP    L   LS   
Sbjct: 116 VTGTNGKTTTTHLIEYFLTECKKNTALIGTLYSRWNGFKQTSIHTTPFSPELQAQLSQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                +  +E SSH L Q R+ G       FTNL +DH+D+H+  + YF AK  LF    
Sbjct: 176 IDKNEYCVIEVSSHALVQGRVKGCGFNVSIFTNLTQDHLDFHKNLENYFLAKQLLFSPEY 235

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A++  DD+Y + +++          S+       H   +   H++ +  +   G 
Sbjct: 236 LQ-GKAVVNIDDSYGERLIQYLGPQKVYSYSIENTMADFHTTNLNYKHDRIEGILKTPGG 294

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGR 357
           +F+F  PL G+F + N L A      + ID   V+  L +   VPGR E +  +  +   
Sbjct: 295 NFEFQSPLVGKFNLSNLLAAIATLFHLNIDLETVINKLPQFPGVPGRVEKIEVSEVQDIS 354

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R   SG++I VFGCGGDRD+ KR IMGKI   LADI+++T 
Sbjct: 355 VIVDYAHTPDSLENLLKATRPFISGKVICVFGCGGDRDRSKRSIMGKICAKLADISVLTS 414

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+E+PE+I ++I+ G+P    F    NR EAI+TAI   +  D +++ GKGHE   I
Sbjct: 415 DNPRTEEPEQILSDILEGVPKNANFWVISNRTEAIKTAILKADPGDGVLIVGKGHENYQI 474

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +   EK    D +  +E L
Sbjct: 475 LGT-EKIYFDDREQAKESL 492


>gi|291280910|ref|YP_003497728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|209746600|gb|ACI71607.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|290760783|gb|ADD54744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|320658210|gb|EFX25939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663519|gb|EFX30803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 495

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q  T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQDATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 515

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 161/478 (33%), Positives = 243/478 (50%), Gaps = 23/478 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +SSDSR I+ G +FVA+ G + DGH F+  A+++GA A++       +     +      
Sbjct: 32  ISSDSRDIEQGGLFVAVRGFQADGHDFVADAVSRGAAAVICE-----EFPGGDVPPGVCF 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP- 149
           +   + R  L+  A  LYG   E +  + V+GT+GK++ A  +  +   +G+    IG  
Sbjct: 87  IKAPDARLALAEAAFALYGGASEQLDVIGVSGTNGKTTTAMLIAAMLNHNGIRCGYIGTG 146

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + I         TTP    L + L  +  +G   V++E SSH L   R+ G++     F
Sbjct: 147 RAVIGDEEIPLERTTPEAHGLHRLLRRMVDEGCRAVAMEVSSHALMLQRVHGVRFRVAVF 206

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL  DH+D+H + +AY +AK RLF +LLP E  A+   DD  +  + +    A C   S
Sbjct: 207 TNLTVDHLDFHGSMEAYASAKQRLFRQLLP-EGRAVFNMDDPRAPFMAEGLPPASCSGCS 265

Query: 270 V---------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +            G++   +          + +S     FD    LPG F V NAL+AA 
Sbjct: 266 LSGVERRADRSVCGEWFLAEVTGEDAQSSHLRLSFPDGMFDGELLLPGRFNVMNALLAAA 325

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            C A+G+           L  V GR E V       R  VDYAHT ++L+ +L+ +  + 
Sbjct: 326 TCHAMGVSGGAAAASFPFLPPVQGRMERVDGGPGRVRAIVDYAHTPDALQRVLQTLARLK 385

Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
              GR+ VVFGCGGDRD  KRP+MG+IA ++AD+ I+T DNPRSEDPE+I  +I  G+  
Sbjct: 386 PAGGRLAVVFGCGGDRDPSKRPVMGRIAEEIADMVILTSDNPRSEDPERILDDIEQGMSC 445

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            G     +R  AI TA+  L + D+L+VAGKG E+    + G++    D + +   LG
Sbjct: 446 IGHRRIADRGTAISTAVAELGELDILLVAGKGRESYQE-SMGKRVFFSDREFLLNSLG 502


>gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 499

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/508 (29%), Positives = 250/508 (49%), Gaps = 28/508 (5%)

Query: 1   MKLQDL----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L+ L    +      L++Q     +   + ++  +  DSR +  G IFVA+ G   DG
Sbjct: 1   MNLKPLNNYIVALTEEHLLSQAYTGDVSIAQCQVTSIEQDSRRVSEGCIFVALRGVHVDG 60

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             +IP+A+A G   IV            +       L V +T K +++ AS  Y +    
Sbjct: 61  ADYIPKALAAGCRIIVTE-----LPRPESASDEVVWLTVTDTAKAIAVLASVYYDRPERQ 115

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + VTGT+GK++ A+   Q+    G+ +         I         TTP  + L + 
Sbjct: 116 LTIVGVTGTNGKTTTATLCYQLWSWLGMRAALFSTVCIRIGDKEYPATHTTPDALELHRV 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +   G  ++ +E SSH L Q R+ G+      FTNL RDH+DYH T QAY  AK  L
Sbjct: 176 MRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLL 235

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+ L P ++ A++ ADD     ++    N    + +   +    ++ ++   +     T+
Sbjct: 236 FDHLTP-DAYALVNADDRNGSVMV---QNCAAHLHTYAMRSHADYMAQLLGQYVDGS-TL 290

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ ++ +    L G +  YN     G+   +   +D +L+L  +  L  V GRF+ +  
Sbjct: 291 LLDNEEVEIK--LVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLL-A 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + RG  + VDYAHT ++LE +LK +  + + ++ VV G GGDRD GKRP MG+IA ++ D
Sbjct: 348 SPRGYHVVVDYAHTPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCD 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAG 466
              +T DNPRSEDP+ I  +++ GIP           +R +AI  A     + D++V+AG
Sbjct: 408 HLYLTSDNPRSEDPQTIIDQMLEGIPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAG 467

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHET   +  G +    D +++REI  
Sbjct: 468 KGHETYQEIE-GVRHHFDDKEVVREIFA 494


>gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
 gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
          Length = 495

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 247/503 (49%), Gaps = 14/503 (2%)

Query: 1   MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK    I +  P L+   + I   Q     I  +  DSR IQ G  FVA+ G+  DG  F
Sbjct: 1   MK----ITQGLPTLLAPWMKIDDPQLNSLTIQHLQLDSRKIQPGDTFVAVAGHAVDGRQF 56

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A+A+GA  ++  +       + +   + PI+ + +  + LS  A R Y  H   ++A
Sbjct: 57  IADALARGANLVLAQADEQRPHGTVSDIDSKPIIYLASLDEHLSALAGRFYADHTNRVIA 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++++  + Q  +  G  +  +G T     +  Q    TT + + +   L  L+
Sbjct: 117 VTGTNGKTTISQLITQWLELMGERAAVMGTTGNGFLNQLQPALNTTGNALEVQATLRQLA 176

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG  + ++E SSHGL Q R+  +  IAG F+NL RDH+DYH T Q Y  AK  LF E  
Sbjct: 177 EQGARYTAMEVSSHGLVQGRIKALPFIAGVFSNLSRDHLDYHGTMQEYAKAKQSLFTE-- 234

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                AI+  DD    +           V           L      +++Q + ++ +G 
Sbjct: 235 HDCQQAILNVDDPVGAQWATHQWPRLVGVSLYQQPETERCLWATSVSYSEQGIHLAFDGS 294

Query: 299 D--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L GEF   N L++    +++G     +L+   +L  V GR E      +  
Sbjct: 295 WGVGHLHVALIGEFNASNLLLSLATLLSLGFSKPALLDTAAQLTPVLGRMELFSVPGK-A 353

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           ++ VDYAHT ++LE  L  +R    G++ V+FGCGGDRD GKRP+M  IA   AD  I T
Sbjct: 354 KVVVDYAHTPDALEKALCALRVHCLGQLWVIFGCGGDRDTGKRPMMAAIAEQFADKIIFT 413

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DDNPRSE    I  +++ G+       + NR +A++ A+   N  D++++AGKGHE   +
Sbjct: 414 DDNPRSESAHAIVQDMLAGLSHRQAHVEHNRYQALQYALAHANADDIILLAGKGHEDYQV 473

Query: 475 VTNGEKKMSVDCDIIREILGLIL 497
           + +     S D +  +++LGL +
Sbjct: 474 LADQTVHYS-DRESAQQLLGLTV 495


>gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
 gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
          Length = 486

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/507 (30%), Positives = 245/507 (48%), Gaps = 38/507 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++Y    E +       +   E +I+++  DSR +  G +FVAI G + DGH F+  
Sbjct: 4   LKDILYGVAIEQV-------VGSTEIEISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKD 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
               GA+A +V +          I      + V N+   L + AS  Y      +  + V
Sbjct: 57  VTENGAKAAIVET------LPEVIAEGVTYIKVANSATALGVVASNFYHNPSSKLKLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKALSY 176
           TGT+GK++V + + ++ ++ G   + +G  ST+ ++  D       TTP  I L + L+ 
Sbjct: 111 TGTNGKTTVCTLLYKLFKKLG---YNVGLVSTVENYINDLVVPATHTTPDQIALNQLLNR 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  +  +E SSH + QHR+DG++   G FTN+  DH+D+H+T   Y  AK   F+ 
Sbjct: 168 MVDAGCEYCFMEVSSHSVVQHRIDGLEFAGGVFTNITHDHLDFHKTFDNYIKAKKGFFDN 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L  K + A+   DD     ++    N      +           K+        + + ++
Sbjct: 228 LTSK-AFALTNVDDRNGNVML---QNTRAHKKTYALNAVADFKAKIIENLF-SGLHLDID 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G +  F   L G F  YN L   G  + +  D   VL  L  L    GRF+++   ++  
Sbjct: 283 GMEVYFR--LVGSFNAYNLLAVYGTALLLEQDRTKVLTVLSMLTGAEGRFDYIIAPNKVI 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            I  DYAHT ++L  IL  I  I+SG   II V GCGGDRD+ KRPIM + A D +   I
Sbjct: 341 GIV-DYAHTPDALRNILSTIENISSGTESIITVVGCGGDRDREKRPIMAQTACDWSHKVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR+E PE I  +++ G+        +   +R EAI+ A  +    D++++AGKGH
Sbjct: 400 LTSDNPRTEKPEDILNDMLAGVSAVNQKKVLTILDRREAIKAACHLAKPGDIILLAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           E    + NG +    D  I+ E   L+
Sbjct: 460 EKYQEI-NGVRTDFDDKQILTEQFNLL 485


>gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
 gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
          Length = 499

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/482 (30%), Positives = 224/482 (46%), Gaps = 25/482 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ +  DSR +  G +F A+ G + DG  FI +A+ +GA AIV           A  
Sbjct: 22  DRPISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGAVAIVTQK------MPAHP 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                ++ V + R  L+  A R Y     ++  + VTGT+GK++V   ++          
Sbjct: 76  PGKVTVIQVADARATLARVAQRYYKFPDRDMTVIGVTGTNGKTTVTHLLKHFLN----GD 131

Query: 145 FQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++G   TI     +       TTP  + +   ++ +   G     +E SSHG+DQ R+ 
Sbjct: 132 QRVGLLGTINYDLGARTVPAYRTTPESLDIYGMMAQMRDAGCRQAVMEVSSHGIDQQRVA 191

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKR 259
           G++  A  FTNL RDH+DYH+T  AYF  K RLF          A++  DD Y   +   
Sbjct: 192 GLQFGAAVFTNLTRDHLDYHKTLDAYFEVKKRLFTGGTGAAPKVAVVNFDDPYGVTLAAS 251

Query: 260 AHNAG--CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                   ++++ G      +  + V          +   G   +   PL G + V N L
Sbjct: 252 LKREHQSAKLVTFGENLQADVRAENVHLNFTNSTFRLVWPGGTMEIESPLIGRYNVSNLL 311

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A      +G D  + L  L     VPGR E +    +   + VDYAHT ++L   L  +
Sbjct: 312 AAIAAAWGLGRDPFVFLARLRAFKGVPGRMERID-EGQPYNVLVDYAHTDDALRNALGML 370

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R IT GR+ VVFGCGG+RD+ KRP+M K   + AD A  T DNPR+E   +I  ++  G+
Sbjct: 371 RAITPGRLFVVFGCGGNRDRTKRPLMVKAVQEFADFAFATADNPRAEPLPQIFDDMKAGV 430

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     +R  AI  A++     D L++AGKGHE+     +       D  ++RE++
Sbjct: 431 LAPEKITWIEDRRRAISLALDAAKAGDCLLIAGKGHESYQEFAD-TVIPFDDRQVVRELI 489

Query: 494 GL 495
           G+
Sbjct: 490 GI 491


>gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 500

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/499 (31%), Positives = 253/499 (50%), Gaps = 29/499 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +++  +S      ++  IN +S DSR I  G +FVA+ G   DGH F+  AI  GA A
Sbjct: 3   ISKILENVSAKKSYSKDIDINNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNGAVA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           +VV+S+  +   +     +  ++ V++T K L   A+  YG+  E  N++ +TGT+GK++
Sbjct: 63  VVVNSSSDVPCLAKY--PDIQVIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTH 184
            A+ + ++    G   F  G  STI ++      +   TTP+ +   + L+ +   G  +
Sbjct: 121 TATLLYKLFLGMG---FGAGLISTIKNYICLEERETINTTPNVLETNRLLADMVRAGCDY 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH   Q R+ G+      FTNL +DH+DYH+T   Y +AK   F+ L P+ + A
Sbjct: 178 CFMEVSSHATVQQRIAGLTFRGAVFTNLTQDHLDYHKTMDNYRDAKKLFFDHL-PQTAFA 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKD-FD 301
           +  ADD     +++          +         + +        Q+   ++ +GK+ ++
Sbjct: 237 LTNADDRNGNFMLQNTKAQRYTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKERYE 296

Query: 302 FLFPLPGEFQVYNAL----VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              P  G F   N       AA LC   GID+  +L  L +L  V GRFE +     G  
Sbjct: 297 VSTPFVGSFNAQNLTAVFGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVIRMA--GIS 354

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L+ +L  I  + S   R++ V GCGGDRD+ KRPIM + A   +D  ++
Sbjct: 355 AIVDYAHTPDALKNVLSTINDVKSPDSRVVTVVGCGGDRDKTKRPIMAQEAAAQSDTLVL 414

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+EDP+ I  ++  G+        I   +R +AI+TA ++    D+++VAGKGHE
Sbjct: 415 TSDNPRTEDPQSILDDMAKGLDKNRLEDTIVIVDRRQAIKTACKLAKSGDIVLVAGKGHE 474

Query: 471 TVHIVTNGEKKMSVDCDII 489
              IV   EK+   D + +
Sbjct: 475 NYQIV-GKEKRHFDDKEEV 492


>gi|83592291|ref|YP_426043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575205|gb|ABC21756.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 493

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/497 (39%), Positives = 266/497 (53%), Gaps = 11/497 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DLI                      I  +++DSR +  GW+F A+ G K DG  FI
Sbjct: 1   MYLDDLIGAVPARAALGGHPGLGGHPGLAIAGLTADSRAVAPGWLFAALPGVKADGRAFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENIL 118
           P        A+   ++  L      +  + P  +V   N R+  +  A+   G  P  ++
Sbjct: 61  P-------AALAAGASAVLAPEGTALPPDAPAALVTAANPRQAFARMAAAFAGAQPATVV 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK+S  SF +QI  R G ++  +G     S  + +   +TTP P+ L K L+ +
Sbjct: 114 AVTGTNGKTSSVSFTRQIWDRLGRTAASLGTLGAESGVYRRAGSMTTPDPVSLHKMLAEM 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  GV  +++EASSHGLDQ+RLDG++L A +FTNL RDH+DYH T  AY  AK RLF E+
Sbjct: 174 TEAGVDALAMEASSHGLDQYRLDGVRLSAAAFTNLTRDHLDYHHTMDAYLAAKARLFGEV 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L +E  A++ ADD     +     + G  VL  G   K + L  V A  + Q + + + G
Sbjct: 234 LGREGVAVLNADDPAFPTLAALCRDRGQSVLDYGRSAKTLRLAGVSAKAHGQSLDLELFG 293

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +    L PL G+FQ  N L A GL IA G      +  L  L  VPGR E V   + G  
Sbjct: 294 RHHSVLLPLVGDFQAMNVLCALGLAIATGAPVDAAVATLASLEGVPGRLEMVARRASGAP 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +YVDYAHT + L   L+ +R    G+++ VFGCGGDRD+ KRP+MG+   + AD+AI+TD
Sbjct: 354 VYVDYAHTPDGLVTALRALRPHCRGKLVCVFGCGGDRDRAKRPLMGRAVAEGADVAILTD 413

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSEDP  IRAE   G P  IE   R  AIR  + +L   D+LV+AGKGHET   +  
Sbjct: 414 DNPRSEDPAAIRAEARVGCPDAIEIDGRDAAIRAGVALLGPNDLLVIAGKGHETGQTIGT 473

Query: 478 GEKKMSVDCDIIREILG 494
                 VD D  R  +G
Sbjct: 474 -VVHPFVDADHARAAVG 489


>gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 507

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/490 (32%), Positives = 253/490 (51%), Gaps = 36/490 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ +  DSR +Q G +F A+ G   DGH FI  A+A+GA A+V+ S +       T+
Sbjct: 20  DGVVSGLYYDSRRVQPGGLFFALRGASVDGHRFIEDALARGAVAVVMESPH-------TL 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSS 144
            +    ++V + R+ ++L A+  +G   +++L   +TGT+GK++V+  V+ I   +G   
Sbjct: 73  PTGVTGILVKDGRRAMALAAAAYFGDPSKDMLVVGITGTNGKTTVSYLVESILLAAGYRP 132

Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G            +  TTP  + L + ++    +G   + +E SSH L+Q R+DG+ 
Sbjct: 133 AVLGTVDYRFEGAHLPSSHTTPESVDLMETIADFRGRGADALVLEVSSHSLEQRRVDGVW 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHN 262
              G FTNL  +H+DYH   + YF AK+RLF  L  +     +  +DD++   +      
Sbjct: 193 FDVGVFTNLTPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVVANSDDSWGARLGAMLPA 252

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V+  G+  +  +    V         ++           PL G++ + N L AAG+
Sbjct: 253 ----VIRCGHASECDVTADDVTISVAGIAGSLRTARGTAALQSPLVGDYNLQNLLCAAGV 308

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             A+ +  A + + L +   VPGR E +  N RG  + VDYAHT ++LE +L  +R +  
Sbjct: 309 GAALDMVPATIAKALAQAPQVPGRLESIA-NERGALVLVDYAHTGDALENVLVTLRQLQP 367

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            R++ VFGCGGDRD GKRP+MG+IA  LAD+AI+T DNPRSEDP  I  ++  G+    E
Sbjct: 368 RRLLCVFGCGGDRDAGKRPVMGEIAARLADVAILTSDNPRSEDPLAIMQQVESGLRRIHE 427

Query: 442 KG------------------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +                   +R EAI  A+ +L   DVL+VAGKGHE   I+   ++   
Sbjct: 428 EPWSLQQARQAAGRGYLSLSDRREAICFAVSLLQPDDVLLVAGKGHEDYQIIGR-QRLHF 486

Query: 484 VDCDIIREIL 493
            D + +R+ L
Sbjct: 487 DDREELRKAL 496


>gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
 gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
          Length = 476

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/476 (31%), Positives = 238/476 (50%), Gaps = 24/476 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I  +  DSR ++   +FVAI G+  +GH FI +AI QGA  I+             I 
Sbjct: 10  VAIKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGALVIICEK------LPNDIV 63

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +    + V N+++ L+  A+  Y    + +  + VTGT+GK+++A+ +  +  ++G    
Sbjct: 64  NGVTYVQVANSKEALAYMAANFYENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAGFKVG 123

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +      +     D   TTP  + +   L+ ++ +GV +  +E SSHG+DQHR  G+  
Sbjct: 124 LLSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHRTTGLVF 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FTNL  DH+DYH +   Y + K R F+EL P  + A+   DD   + ++    N  
Sbjct: 184 AGGIFTNLSHDHLDYHSSFAEYRDVKKRFFDEL-PASAFALTNVDDKNGEVML---QNTK 239

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +  + G +    +      I   Q   + ++  D +    L G F  YN L        
Sbjct: 240 AKQYTYGLKN---YADYKAQILENQFTGLLLKINDQEVWSRLIGSFNAYNILAIYAAAEL 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR- 383
           +G+++   L+ + +LH V GRF++  +        VDYAHT ++L+ +L  I  I +   
Sbjct: 297 LGLETLENLKFISELHSVNGRFQYFISPEEKITAIVDYAHTPDALKNVLDTINAIRTKNE 356

Query: 384 -IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----- 437
            +I V GCGGDRD+ KRP MG IA  L+   I T DNPR+ED + I  EI  G+      
Sbjct: 357 ELITVVGCGGDRDRTKRPKMGHIASALSSKVIFTSDNPRTEDADAIIEEIEKGVEPQNFN 416

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +   NR +AI+TA +M    D++++AGKGHET   V NG+K    D  I+ E L
Sbjct: 417 KTVSISNRKQAIKTACQMAQANDIILIAGKGHETYQEV-NGQKHDFDDYKIVSEFL 471


>gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis 053442]
 gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           053442]
          Length = 492

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+A GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEHADIRIIDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKR +MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPERVEADRAAAIRYAVERAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|2177098|gb|AAB60789.1| UDP-MurNAc-Dipeptide: meso-diaminopimelate ligase [Escherichia
           coli]
          Length = 495

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR + V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMK-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
 gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
          Length = 485

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 210/494 (42%), Positives = 278/494 (56%), Gaps = 22/494 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D        +       E  +  +++DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLRELFGDD--------AAMDAPGGELAVTGLAADSRAVKLGDLFFALAGTKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA AIV   A +            P +   N R+ L+L A+R Y + P  I AV
Sbjct: 53  DAAIASGAVAIVGEHAPA--------TGRVPFIATPNPRRALALAAARFYPRQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G  S  IG    ++ S      +TTP PI L + L  L+ 
Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVTPSRTVYGSVTTPDPIELHRELDQLAG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ+RLDG+++ A  FTNL RDH+DYH T   Y + K+RLF +L+ 
Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295
            +  A+I  D   S  V++ A+    RV+ VG +       I L +       Q+VT+  
Sbjct: 225 PDGIAVISTDHDCSHTVIEAANARKVRVMRVGRRSDGALAGIRLVEAAIEDFAQRVTLEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++     PL GEFQ+ NALV+AGL I  G D   V   LE L    GR E VG    G
Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGSDPDQVFAALEHLEGARGRLELVG-EHNG 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             ++VDYAH  ++L   L  +R     +++VVFG GGDRD GKRP+MG IA D AD+ IV
Sbjct: 344 APVFVDYAHKPDALAKALLALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA I+    G  E G+R EAIR AI  L   D L++AGKGHET  IV
Sbjct: 404 TDDNPRSEDPAAIRAAILAAARGACEIGDRAEAIRGAIAGLQPGDALLIAGKGHETGQIV 463

Query: 476 TNGEKKMSVDCDII 489
            +     S     +
Sbjct: 464 GDRVLPFSDHEAAV 477


>gi|284008375|emb|CBA74779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arsenophonus nasoniae]
          Length = 475

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/476 (32%), Positives = 237/476 (49%), Gaps = 14/476 (2%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            E++ DSR + AG +F+A+ G+++DG  +I QAIAQG  AI+  +    +  +       
Sbjct: 3   REMTLDSRKVAAGDLFLAVKGHQKDGRQYISQAIAQGVAAIIAEAKGETEAGTIRYMHGV 62

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P++ +++    LSL A   Y        ++ VTGT+GK++    + Q  +  G  S  +G
Sbjct: 63  PVIYINDLNNQLSLLAGEFYQHPAAKLRLIGVTGTNGKTTTTQLIAQWAKGLGEVSAVMG 122

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                I      +  TT S + +   L  L  +  T V++E SSHGL Q R+  I   A 
Sbjct: 123 TVGNGILGQIVLSENTTSSAVDVQAELQLLLDKQATLVAMEVSSHGLVQSRVAAIPFTAA 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH   Q Y  AK  LF     K    II  DD    + +++   A    
Sbjct: 183 VFTNLSRDHLDYHGDMQNYAAAKWLLFS--THKSDKQIINVDDETGLQWLEKLPQACAVS 240

Query: 268 ----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               +   +QG ++ +++V        +  +          PL G F V N ++A    +
Sbjct: 241 MENRIPTDWQGAWMLVEQVDYHDRGATIHFNSTWGKGSLKSPLMGAFNVNNVMLAMATLL 300

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G     V++    +  V GR E   +  R   + VDYAHT ++LE  L  +R    GR
Sbjct: 301 MMGYPFEAVIKSSHAIQPVCGRMEVFTSPGR-PTVVVDYAHTPDALEKALSALRLHCRGR 359

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           +  VFGCGGDRD+GKR +MG +A   ADI +VTDDNPRSE+P+ I  +I+ G       +
Sbjct: 360 LWCVFGCGGDRDKGKRALMGSVAEQYADIVVVTDDNPRSEEPKAIINDILSGFLDAGRAM 419

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
               R+EA+ +AI   N  DV+++AGKGHE   I+ +     S D   +  +LG++
Sbjct: 420 PIVGRVEAVTSAIMQANADDVILIAGKGHEDYQIIGDRRLDYS-DRLTVARLLGVM 474


>gi|253988589|ref|YP_003039945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780039|emb|CAQ83200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Photorhabdus asymbiotica]
          Length = 495

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/501 (32%), Positives = 239/501 (47%), Gaps = 17/501 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  ++   L+  L I      E  + E++ DSR   AG +FVAI G++ DG  +IPQAIA
Sbjct: 1   MADRNLRSLLAPLGI---DAPECALREMTLDSRKSAAGDLFVAIKGHQVDGRHYIPQAIA 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
           QG  A++  +       +  +    P++ V +    LS  A + Y        ++ VTGT
Sbjct: 58  QGVAAVIAEAQGEADSGTVQVIHGVPVVYVSDLNNKLSQLAGQFYHHPGGQLRLIGVTGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++    + Q     G  S  +G     +      +  TT S + +   L  L  +G 
Sbjct: 118 NGKTTTTQLLAQWAHGLGEISAVMGTVGNGLLGHVAPSENTTGSAVDIQLDLQQLVQKGA 177

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T  ++E SSHGL Q R+  +      FTNL RDH+DYH   + Y  AK  LF     K+ 
Sbjct: 178 TFAAMEVSSHGLVQGRVAALPFEVAVFTNLSRDHLDYHGDMEHYEAAKWLLFSSHNVKQQ 237

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              I ADD   ++ + R   A        L   +QG+++   ++        VT      
Sbjct: 238 I--INADDDVGQKWLSRLPQAVAVTMENRLPENWQGRWLSASEIKYHDKGVSVTFESSWG 295

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G F V N L+A    +A+G     +LE    L  V GR E      +   +
Sbjct: 296 GGTIDSPLMGAFNVSNLLLALSTLLALGYPLKKLLETASCLEPVCGRMEVFNAPDK-PTV 354

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L   R    GR+  VFGCGGDRD+GKR +MG +A   AD  I TDD
Sbjct: 355 VVDYAHTPDALEKALLAARLHCKGRLWCVFGCGGDRDKGKRSLMGSVAEQWADYVITTDD 414

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSE+P+ I  +I+ G       I    R+EA+ +AI    + DV++VAGKGHE   +V
Sbjct: 415 NPRSEEPQAIVDDILTGFIDPGRAIVIHGRVEAVTSAIMQAKQDDVVLVAGKGHEDYQLV 474

Query: 476 TNGEKKMSVDCDIIREILGLI 496
            +     S D   +  +LG+I
Sbjct: 475 GHRRLDYS-DRLTVARLLGVI 494


>gi|313646532|gb|EFS10993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2a str. 2457T]
          Length = 490

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/491 (34%), Positives = 252/491 (51%), Gaps = 14/491 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +
Sbjct: 3   DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
                D         P++ +    + LS  A R Y +  +N+  + VTGT+GK++    +
Sbjct: 63  KDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +S  +G     +         TT S + +   L+ L  QG T  ++E SSH
Sbjct: 123 AQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E       AII ADD  
Sbjct: 183 GLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEV 240

Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  + +  +A        ++    G+++   +V    +   +  S    D +    L G
Sbjct: 241 GRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT ++
Sbjct: 301 AFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I
Sbjct: 360 LEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAI 419

Query: 429 RAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N     S D
Sbjct: 420 INDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-D 478

Query: 486 CDIIREILGLI 496
              +  +LG I
Sbjct: 479 RVTVARLLGGI 489


>gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha275]
          Length = 492

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 230/501 (45%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKFWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +        
Sbjct: 230 HGLKHAVINVDDGYGAELVGRLKKDCPDLAVYSYGFSEHADIRIIDFTASSDGIAAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKR +MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|294635004|ref|ZP_06713521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091603|gb|EFE24164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 495

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/495 (34%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L   L+ +  Q  ER + E++ DSR   AG +FVA+VG+  DG  FIPQAIAQG  AI
Sbjct: 4   RNLRALLAPWVQQAPERALREMTLDSRVAAAGDLFVAVVGHSADGRRFIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +    +D     +   P++ +    + LS  A R YG+  ++  ++ VTGT+GK++ 
Sbjct: 64  IAEADGVAEDGCVREQHGVPVVYLSRLNERLSALAGRFYGQPGDDVQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G     +G     +      +  TT S + +   L  L+ +G T V++E
Sbjct: 124 TQLLAQWAQLLGERGAVMGTVGNGLLGQVYPSENTTGSAVDVQHMLRNLADEGATLVAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +  +A  FTNL RDH+DYH     Y  AK RLF          II A
Sbjct: 184 VSSHGLVQNRVLALPFVASVFTNLSRDHLDYHGDMAQYEQAKWRLFS--THHSGEKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A    L+      + G+++  ++V        + I           
Sbjct: 242 DDEVGQRWLAKLPDAVAVTLADALPQAWPGRWLAARRVDYHDGGATIDIDSSWGCATLHS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L GEF V N LVA    +A+G     +     +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGEFNVSNLLVALATLLALGYPLEALSAVSGQLQPVCGRMEVFQAAGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  +FGCGGDRD GKRP+MG IA   AD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALLAARLHCQGQLWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+  PG ++    R EA+  AI     QDV++VAGKGHE   +V N    
Sbjct: 421 PRTIINDILSGMLDPGMVQAIPGRAEAVTAAIMQAAPQDVILVAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG++
Sbjct: 481 YS-DRVTVARLLGVV 494


>gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
 gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
          Length = 488

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/487 (31%), Positives = 244/487 (50%), Gaps = 13/487 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   L +      E  I+ V  DSR ++ G +F+A+ G   DG  FI QA+A GA AIV 
Sbjct: 6   LAGVLDMPSCPSAETMISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVA 65

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVAS 131
               +            P++ +   ++     ASR + +     +++ VTGT+GK++ + 
Sbjct: 66  EPPVA----GFVEALQVPLVEMPELQQESGFIASRFHKEPSVSLHMIGVTGTNGKTTTSR 121

Query: 132 FVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            V Q+ +  G S   IG    +++        TTP  + L + L+    QGV   S+E S
Sbjct: 122 LVAQLIRLQGKSCGVIGTLGASLNEDVAQGGNTTPDAVSLQQQLADWRDQGVYAASMEVS 181

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH + Q R++G+      FTNL  DH+DYH + +AY  AK+ LF         A++  DD
Sbjct: 182 SHAMVQGRVNGVGFETAVFTNLSHDHLDYHGSMEAYGRAKLALFAN--EGLKHALVNLDD 239

Query: 251 AYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            +   V             SV      + +++      +    +       +F+ PLPG+
Sbjct: 240 EFGARVCDVVEPGVQLITYSVSNPQADVFVEQADFSAGRVTGVLRTPWGTGEFVSPLPGD 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F + N   A       G   A VL+++ +L  VPGR + + +N+ G ++ +DYAHT ++L
Sbjct: 300 FNLANLAAAVSAVTLAGEPLAEVLKNVSRLRPVPGRMQSL-SNTLGLQVIIDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L  +R    G+++VVFGCGGDRD+ KR +MG++A  +AD  +VT DNPR EDP  I 
Sbjct: 359 EQVLTALRLHVDGQLVVVFGCGGDRDREKRQVMGRVACAIADKVLVTSDNPRGEDPAAIL 418

Query: 430 AEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           A+I  G  G ++ + +R  AI+ A+      D +V+AGKGHE   +V +GE     D + 
Sbjct: 419 ADIEVGCSGQYLLEVDRSTAIKRAVNEAGAGDCVVIAGKGHEDYQVV-DGEYLHFSDEEQ 477

Query: 489 IREILGL 495
               L +
Sbjct: 478 ALAALAV 484


>gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
 gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
          Length = 486

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 242/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+    P           +    +I  + +D+R +  G +FV I G   DGH F 
Sbjct: 1   MELHKLLRFLQP-------YMTFKGENPEITAIVNDNRKVTPGSLFVCIEGYTVDGHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                    A       +       +  + P++VV NT++ +++ A   YG+  + +  +
Sbjct: 53  --------AASAAKKGAAAVIAQRELDLDIPVIVVKNTKRAMAVLADAFYGQPSKQLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  +++I   +G  +  IG   T I+    + + TTP  + L      +
Sbjct: 105 GITGTNGKTTTSHLIEKILADAGRKTGLIGTMYTKIADETFEVKNTTPESLTLQSTFKKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  GV    +E SSH LD+ R+ G       FTNL +DH+DYH+T   Y  AK  LF +L
Sbjct: 165 ADAGVDSAVMEVSSHALDEGRIHGCDFNIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQL 224

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                  +   AI+ +DD  S E  K   +    V+S G  Q   +    +       + 
Sbjct: 225 GSSYNHEEPKYAILNSDDPASAEYEK---STAAHVISYGIDQEADLRAINIQMTSGGTEF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            + G+F +YN L + G  IA GI  + +++  E++  V GRFE V  
Sbjct: 282 DLISPFGKHKVSLKMIGKFSIYNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDY+HT +SL+  L+ ++     RI  + GCGGDRD+ KRP+M +IA   + 
Sbjct: 342 -GQDFSVIVDYSHTPDSLKNALETVKQFALKRIFTIVGCGGDRDRSKRPLMAEIACQYST 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPRSEDP +I  ++  G+ G  +    +R EAI  A++  +K DV+++AGKGH
Sbjct: 401 DPIFTSDNPRSEDPIQILRDMEEGVKGESYKTIADRKEAIHYAVKNASKGDVILIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   V N       D  + +E +
Sbjct: 461 ETYQQVGNQVFD-FDDRLVAKEAI 483


>gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
          Length = 463

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 262/476 (55%), Gaps = 25/476 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  ++ +S+ ++ G+IFVAI G++ DGH F+ +A+++GA+ ++V     + D       
Sbjct: 6   DVKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKDVGITD------- 58

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I+ V +TR+ L    S  YGK  + +  + +TGT+GK++    V+ +    G+ +  
Sbjct: 59  -NRIVKVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGL 117

Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +G      +    +    TTP P      L  +   G   +  E SSH LDQ R+     
Sbjct: 118 VGTIYYRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWATHF 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL  DH+DYH++ + YF AK+RLF+E   +   A++ +DD Y K +++      
Sbjct: 178 HIVGFTNLSHDHLDYHKSMEEYFKAKLRLFKEYTYEY--AVVNSDDEYGKRIVRELKG-- 233

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R ++ G +G F  L          ++ ++ EGK + F   L G+FQ YN  +    C+ 
Sbjct: 234 -RAITYGREGDFKIL-DFDTGFEGSKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCML 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GI+   + E L+K++ VPGRFE       G  + VDYAHT ++LE +LK+IR +++GR+
Sbjct: 292 VGIEVQAIEEGLKKVY-VPGRFE--TYRGDGFLVIVDYAHTPDALENVLKSIRRLSTGRV 348

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441
           I +FG GG+RD+ KRPIMG +A   +D+ ++T DNPR EDP  I  +I+ G+      + 
Sbjct: 349 ITLFGAGGNRDRTKRPIMGSVAEKWSDLLVITSDNPRDEDPMDIIRDILQGVKDTSKVLV 408

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           + +R +AI+ AI +  + D +++AGKGHE    +  G K    D D+++E+L + L
Sbjct: 409 EEDRKKAIKMAISLAEEGDTVLIAGKGHEDYQEIK-GVKYPFKDSDVVKEVLSVRL 463


>gi|218687962|ref|YP_002396174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ED1a]
 gi|218425526|emb|CAR06309.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli ED1a]
          Length = 495

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNEPLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSA-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGVI 494


>gi|152968670|ref|YP_001333779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150953519|gb|ABR75549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 495

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/495 (32%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D         P++ +    + LS  A R Y +  +   ++ VTGT+GK++ 
Sbjct: 64  IAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G     +         TT S + +   LS L  QG T  ++E
Sbjct: 124 TQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++    V    +   +         +   
Sbjct: 242 DDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLADLLKSAARLQPVCGRMEVFSAPGKPA-VVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  A+    + DV++VAGKGHE   IV N    
Sbjct: 421 PRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG +
Sbjct: 481 YS-DRVTVARLLGAV 494


>gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
          Length = 488

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/496 (30%), Positives = 244/496 (49%), Gaps = 22/496 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++  D  + +    +   ++ + K+  V+ D+R +  G +F+AIVG   DGH FIPQAIA
Sbjct: 1   MLASDLIQALKYKRLSQSEFTDFKVTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
           +GA+ I+             + +  P++ V +T + ++  A + YG   +   ++ VTGT
Sbjct: 61  KGAQMIIAQEP---------VETTVPVVYVKDTHRAMAFLADKFYGSPSQSMKMIGVTGT 111

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++V   ++++    G  +  IG     ++        TTP  +   K L+ +    V
Sbjct: 112 NGKTTVTHLIEEVFHDLGEGTGLIGTLYRKVNDQVYPTTNTTPDVLTNQKTLAEMRDANV 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             VS+E SS  L Q R+ GI      FTN   DH+ YH+T   Y  AK  LF ++     
Sbjct: 172 KTVSMEVSSIALVQGRVWGINYDICVFTNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFS 231

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
              A++  DD   +E +    +    +L+ G      I+   +    +  +  + V  + 
Sbjct: 232 GKTAVMNIDDPVGREFIDYTTS---NILTYGIKHQADIYADHIKITIHGTEFDLHVFDEV 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L GEF VYN+L A G   A G   A +++ L ++  V GRF+ V +N+ G  + 
Sbjct: 289 KHVKTHLIGEFNVYNSLAAVGAAYAAGASVAEIVDSLSRVKGVKGRFQLVPSNT-GVSVI 347

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L  +L+ +          + GCGGDRD  KRP M KIA+D +  AI+T+DN
Sbjct: 348 VDYAHTPDGLLNVLETLNDFAEQDTYCIVGCGGDRDAQKRPQMAKIAVDNSTHAILTEDN 407

Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PR+EDP KI  +++ GI         NR EAI+ A+      D +++AGKGHE   I+  
Sbjct: 408 PRTEDPHKIMDDMLAGIDSDQATVIFNRREAIQYAVNRAKPGDAIIIAGKGHEDYQII-G 466

Query: 478 GEKKMSVDCDIIREIL 493
             K    D +   + L
Sbjct: 467 KTKHHFDDYEEAEKAL 482


>gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
          Length = 484

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/499 (32%), Positives = 247/499 (49%), Gaps = 30/499 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+          +S       E +I  +++DSR    G +FV I G + DGH F 
Sbjct: 1   MKLQNLL--------RDVSYTGGALPEFEITGITADSRKAGPGVVFVCIPGERADGHDFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A G+ A++                  P ++V +TR   +L  +  +G+  E +  V
Sbjct: 53  ASAAAAGSPAVLALRDTGAP---------VPHILVKDTRLAYALCCANFFGRPAERLRMV 103

Query: 121 TGTSGKSSVASFVQ--QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             T       +     +I + +G  S  IG    +       + LTTP P    + L  +
Sbjct: 104 GVTGTNGKTTTTTLLKEILEYNGHKSGLIGTIVNMAGGKTLPSHLTTPEPYEFQQLLKTI 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G     +E SSH L Q R+ G    A  FTNL +DH+D+H+T + Y  AK +LF   
Sbjct: 164 ADEGCEFAVMEVSSHALAQERVAGCHFEAAVFTNLTQDHLDFHKTMENYLEAKEKLFS-- 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+  DD Y+ E+++ A        S  Y       + +   ++  +  +    
Sbjct: 222 --MCDLGIVNVDDDYAPEIIRTAK-CKTVTYSARYMNADYTARNIKLKNDGVEYEMVGNA 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+PG F VYN L AA   +++GI    VLE L ++  V GR E V T  R   
Sbjct: 279 LIGRVSVPIPGAFSVYNTLAAAAAAVSLGIPFKQVLEALHQVKGVKGRIEVVPT-GRNFT 337

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT ++LE ILK+IR    GR++ +FGCGGDRD+ KRPIMG +A   AD  IVT 
Sbjct: 338 VIIDYAHTPDALEKILKSIRGFAKGRVVALFGCGGDRDKTKRPIMGMVAGRGADFCIVTS 397

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP+ I  +I+ G+ G   ++   NR EAI  A++   K D++++AGKGHE   I
Sbjct: 398 DNPRTEDPQAIIDDILPGMDGPAPYVVVPNRREAIAYALKNAQKDDIVLLAGKGHEDYQI 457

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +   EK    + +++ EIL
Sbjct: 458 IGR-EKHHFDEREVVAEIL 475


>gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
 gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
          Length = 495

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/491 (32%), Positives = 254/491 (51%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AI QGA 
Sbjct: 7   LSELIAPWLELTDPKLASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIVQGAN 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +  +  R   P++ + +    LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 67  LVLAQADAEHPNGVSEYRQQVPVIYLADLGTHLSEMAGRLYGDHQNQLIGVTGTNGKTTI 126

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     S  +    TT + + +   L  L+ +G  + ++E
Sbjct: 127 TQLIAQWLELLGHKAAVMGTTGNGFLSALEPAANTTGNALQIQATLRDLAERGAQYTALE 186

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 187 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 244

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 245 DDAVGAQWVKQLPQAIGVSLVTKPGTAQAIWARQVEYAESGITLNFDSSWGEGELHAPLI 304

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G +   +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 305 GEFNACNLLLALATLLSLGFEKNALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 363

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 364 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 423

Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + NR +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 424 IVADMVAGLNHPELAHIEHNRFQAASYALQQAGAQDIILLAGKGHEDYQVLANETIHYS- 482

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 483 DRETAQQLLEL 493


>gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa]
          Length = 487

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/490 (32%), Positives = 239/490 (48%), Gaps = 16/490 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  ++QL  FP   R+  I E++ DS  ++   +F+ + G  +DG   I  A+ +GA A
Sbjct: 1   MPMSLSQL--FPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATA 58

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           +    AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 59  V----AYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPDLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++     +      S+  K      PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREASPTASPTARRSSIAAKQGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A G  + +G     +L  L +L    GR + +G   +   + VDYAHT +
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGGK-PLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    
Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAA 411

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I  G     +     +R EAI   I      DV+++AGKGHE    + +G +    
Sbjct: 412 IIADIRKGFAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFS 470

Query: 485 DCDIIREILG 494
           D +     L 
Sbjct: 471 DIEQAERALA 480


>gi|238893065|ref|YP_002917799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238545381|dbj|BAH61732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 495

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/495 (32%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D         P++ +    + LS  A R Y +  +   ++ VTGT+GK++ 
Sbjct: 64  IAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G     +         TT S + +   LS L  QG T  ++E
Sbjct: 124 TQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++    V    +   +         +   
Sbjct: 242 DDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  A+    + DV++VAGKGHE   IV N    
Sbjct: 421 PRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG +
Sbjct: 481 YS-DRVTVARLLGAV 494


>gi|215485251|ref|YP_002327682.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263323|emb|CAS07638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Escherichia coli O127:H6 str. E2348/69]
          Length = 495

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGGI 494


>gi|303228427|ref|ZP_07315260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|303230769|ref|ZP_07317516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514529|gb|EFL56524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302516929|gb|EFL58838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 494

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/504 (30%), Positives = 246/504 (48%), Gaps = 27/504 (5%)

Query: 9   KDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ++I+ L +  +Q  +   I ++++DSR ++   +F+A+ G   DGH +I +A+A  
Sbjct: 2   KTLKDIISTLDVQQVQGNQNVSIQDITADSRAVKPNSLFIALDGATVDGHNYIDKAVA-- 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSG 125
                  +   +     T+ ++  ++ V +TR+ +       +        ++ VTGT+G
Sbjct: 60  -----AGAVAVIVSKPVTVPNDVCVITVSDTRQAMMACVPYFFDYPANRMRMVGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG     I   +     TTP  + L   L  +  + V +
Sbjct: 115 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVQENVEY 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-----P 239
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++       
Sbjct: 175 CVMEVSSHALALGRVSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQEK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I  DD+Y   VM++         ++G     ++   V       Q T++ +G+ 
Sbjct: 235 DNKGAVINIDDSYGHRVMEKTTAPTITYSTLG--KGTLNASDVHMSTKNSQYTVNYKGES 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +       G F VYN L A G C+  GI    +   L+    VPGRFE +    +   + 
Sbjct: 293 YPVSMNTTGLFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELI-EEGQDFAVV 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L+ IL+  + I   RII+VFGCGGDRD  KRPIMG+IA +  D   VT DN
Sbjct: 352 VDYAHTPDGLQNILETAKAIKENRIIIVFGCGGDRDATKRPIMGRIAAEYGDKIYVTSDN 411

Query: 420 PRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PR+EDP +I  ++  G+         +    +R EAI  AI      D++++AGKGHE  
Sbjct: 412 PRTEDPVQIVKDVEVGVKEALRDGTSYEVIVDRREAINHAIHDAKAGDIVIIAGKGHENY 471

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+ N E     D +  R+ L  I
Sbjct: 472 QILKN-ETIHFDDREEARKALKEI 494


>gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
 gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
          Length = 499

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 257/501 (51%), Gaps = 10/501 (1%)

Query: 1   MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+          ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  F
Sbjct: 1   MRWNMNTQTALSELIAPWLELTDPKLASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +AIAQGA A++  +           R   P++ +    + LS  A RLYG H   ++ 
Sbjct: 61  IDKAIAQGANAVLAEADAHHAHGQVEYREAVPVMYLSELDQHLSEMAGRLYGGHHNQLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++   + Q  +  G  +  +G T     +  +    TT + + +   L  L+
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G  + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E  
Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +   AII  DDA   + +K+   A    +++     + I  ++V    +   +      
Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSW 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +  +
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AK 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TD
Sbjct: 358 MVVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   +
Sbjct: 418 DNPRSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALKHAGAQDIILLAGKGHEDYQV 477

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + N     S D +  +++L L
Sbjct: 478 LANETIHYS-DRETAQQLLEL 497


>gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis FAM18]
 gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           FAM18]
          Length = 492

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/501 (30%), Positives = 230/501 (45%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L     P L    +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETGIPTLSCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
            A+A GA  +          F+       P   + + +    + A+++YG   + +    
Sbjct: 55  AAVANGAAFVFWDDDG---KFAWNPEWKVPNQGIKDLKHRAGILAAQVYGNVSDGLKFWG 111

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK+S+  ++ Q     G  +  +G          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                A+I  DD Y  E++ R         V S G+ +   I +    A  +  +     
Sbjct: 230 HGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEHADIRITDFTASSDGIEAVFRT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A       VL+ L K+    GR + +  NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACIALLCANDYPLDKVLDVLAKIRPASGRMDCI-MNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKR +MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P  I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I+ + L
Sbjct: 469 QDV-QGVKHRFSDLEIVGQAL 488


>gi|293417961|ref|ZP_06660583.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
 gi|291430679|gb|EFF03677.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
          Length = 495

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGGI 494


>gi|292489362|ref|YP_003532249.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
 gi|292898414|ref|YP_003537783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198262|emb|CBJ45368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291554796|emb|CBA22623.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
          Length = 495

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/495 (31%), Positives = 242/495 (48%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +G +FVAI G+  DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWVPGAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +  +  D         P++ +    + LS  A R + +      ++ VTGT+GK++ 
Sbjct: 64  IAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +   +G     +         TT S + +   L+ L  +G +  ++E
Sbjct: 124 TQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A +FTNL RDH+DYH     Y +AK  LF E   +   AII A
Sbjct: 184 ISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTE--HQVGQAIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +++  +A        L  G  G+++   KV        V  +    D     
Sbjct: 242 DDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHIDS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++    + +     +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++T+DNPR E+
Sbjct: 361 TPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITNDNPRGEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R +A+   +    + D+++VAGKGHE   I+ +    
Sbjct: 421 PAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFD 480

Query: 482 MSVDCDIIREILGLI 496
            S D D +  +LG++
Sbjct: 481 YS-DRDTVARLLGVL 494


>gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
 gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
          Length = 501

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/490 (32%), Positives = 240/490 (48%), Gaps = 23/490 (4%)

Query: 24  QWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            W E+ I   +++ DSR +  G +F+A+ G++ DG  FI  AI QGA  I+  +     +
Sbjct: 13  AWVEQLIPLKQMTLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGAAIILAEAESDQDE 72

Query: 82  FSAT--------IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVAS 131
                        R    ++ V    + LS  A   Y      +  + +TGT+GK++ A 
Sbjct: 73  IELDSQFARYNLDRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQ 132

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            + Q     G  S  +G     +    Q+   TT S I + + L+    QG    ++E S
Sbjct: 133 LLAQWHNLLGGHSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVS 192

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL Q+R++ ++     FTNL RDH+DYH +  AY  AK RLF  L  +    ++ ADD
Sbjct: 193 SHGLAQYRVEALQYDLAIFTNLSRDHLDYHHSIAAYEAAKFRLFNAL--QTKAQVLNADD 250

Query: 251 AYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
             ++  +    NA       +   + +F+   KV        +       +  F   L G
Sbjct: 251 QVAQNWLSMLPNAVLVSCDPNFTSEHQFVKATKVNFSLQGAYIEFESSWGNGQFHSQLSG 310

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTS 366
            F V N L+A    + +G D A ++    +L  V GR + V   T+     + VDYAHT 
Sbjct: 311 AFNVTNILLALAGLLTLGYDLAKLVATASQLRSVTGRMQKVSAITDKNRPLVLVDYAHTP 370

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L+  L+  R  T G++  VFGCGGDRD GKRP+M  IA +LAD  IVT+DNPR+ED  
Sbjct: 371 DALQKALQAARLHTKGKLFCVFGCGGDRDCGKRPLMATIAEELADGVIVTNDNPRTEDQH 430

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           KI AEI+ G       +   +R +AI+ AI+  +  D++++AGKGHE   I+    K   
Sbjct: 431 KIVAEIMQGFAKPDNILVIYDREQAIQHAIKHASSADLILIAGKGHENYQIIGT-IKHHF 489

Query: 484 VDCDIIREIL 493
            D +I  + L
Sbjct: 490 SDQEIASKYL 499


>gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
 gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
          Length = 503

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/507 (34%), Positives = 247/507 (48%), Gaps = 33/507 (6%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +LI  L    +    +R I  ++ DSR ++ G++FVAI G + DGH FI +      
Sbjct: 3   NLKDLIAVLPEKTVTGPVDRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIQE------ 56

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGK 126
              V   A ++    A      P + V ++R  L L AS  YG     ++   VTGT+GK
Sbjct: 57  --AVARGAAAVVGERAPAVEGVPYVQVPSSRTALGLLASAFYGHPSARLVLVGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    V+ + + +G  +  IG    I    +     TTP    L K L+ +   G+THV
Sbjct: 115 TTTTHLVRWVLEAAGHPTGLIGTVHNIIGGRSLPVERTTPEAADLQKLLAAMRDAGLTHV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------- 237
            +E SSH L   R+ G     G FTNL +DH+D+H + + Y  AK RLF  L        
Sbjct: 175 VMEVSSHALTLQRVAGCAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFARLGRNEIPGT 234

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
             P    A+I ADD +   +  R+      V++ G  Q   +  + V       +  +  
Sbjct: 235 VKPGPKAAVINADDPWGTFMADRSSAP---VITYGIRQAADVTARDVVVEPGGVRFVLGT 291

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F VYNAL AAG  +A+GID A V   LE L  VPGR E +    + 
Sbjct: 292 RDGEVPVRLRLTGRFNVYNALAAAGAGLALGIDPATVARGLESLPAVPGRLERID-RGQP 350

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + VDYAHT + LE +L  +R +   GR++ VFGCGGDRD+GKRP MG IA  LAD  +
Sbjct: 351 FTVLVDYAHTPDGLENVLSTVREMAGQGRVLCVFGCGGDRDRGKRPQMGAIAARLADYTV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPRSEDPE I  +I  G+       +     R  AIR  +E+    DV+V+AGKGH
Sbjct: 411 LTSDNPRSEDPEAIIDDIEAGVRQVPGAAYERVTERAAAIRRVLELARPGDVVVIAGKGH 470

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           E   I  +       D ++    L  +
Sbjct: 471 EDYQIFADRTIH-FDDREVAATALEAM 496


>gi|288937143|ref|YP_003441202.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|290512566|ref|ZP_06551932.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
 gi|288891852|gb|ADC60170.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|289774907|gb|EFD82909.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
          Length = 495

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/495 (32%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D         P++ +    + LS  A R Y +  +   ++ VTGT+GK++ 
Sbjct: 64  IAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G     +         TT S + +   LS L  QG T  ++E
Sbjct: 124 TQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++    V    +   +       + +   
Sbjct: 242 DDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGNGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N    
Sbjct: 421 PRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG +
Sbjct: 481 YS-DRVTVARLLGAV 494


>gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 494

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 252/501 (50%), Gaps = 34/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+     E++  +         +++  ++  SR I    +F AI G   DGH FI
Sbjct: 1   MLLKELLQGV--EVLQTIGDTS-----QEVGNITQSSRDITPNTLFFAIKGAHTDGHRFI 53

Query: 61  PQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           P+ IAQ G   +V       +D    +      + V +T + +   A+  YG   E   +
Sbjct: 54  PEVIAQQGKVLVV-------EDLPEALAEGVTYVQVTDTSRAMGQIAAHFYGHPSEQLRL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++AS   Q+ ++ G     I   +  I    ++   TTP  + L K L  
Sbjct: 107 VGVTGTNGKTTIASLSYQLFRQLGYKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  QGVTH  +E SSHG+  HR++G+    G FTNL +DH+D+H+T   Y + K + F+ 
Sbjct: 167 MVGQGVTHCFMEVSSHGIALHRIEGLVFAGGVFTNLTQDHLDFHETFAQYRDTKKKFFDH 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK + A+   +D     +++   +A     ++G    F   K          +T+ V 
Sbjct: 227 L-PKTAFALTNIEDKNGAYMLQN-TSAHKSTYALGRAADF---KGQLLESTFAGMTLRV- 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +    L G F  YN L      + +G +   VL  +  L  V GRF++  + S G 
Sbjct: 281 -GNHEVWTSLIGRFNAYNLLAIYATAVLLGEEPLEVLTQISTLRSVAGRFQYFVSPS-GV 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + VDYAHT ++L+ +++ I  I   S R+I V GCGG+RD+GKRPIM  IA  L++  I
Sbjct: 339 TVIVDYAHTPDALQNVIETILDIKDPSQRLITVVGCGGNRDKGKRPIMAHIATSLSEKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDPE+I  E+  GI        +   +R +AI+ A  +  K D++++AGKGH
Sbjct: 399 LTSDNPREEDPEEILREMEAGITPENQHKSMTVTDRRQAIKVACHLAQKGDIVLIAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIR 490
           ET   V  G +    D +  R
Sbjct: 459 ETYQEVK-GVRTHFDDLEEAR 478


>gi|291616267|ref|YP_003519009.1| MurE [Pantoea ananatis LMG 20103]
 gi|291151297|gb|ADD75881.1| MurE [Pantoea ananatis LMG 20103]
          Length = 499

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/503 (32%), Positives = 242/503 (48%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + +++ DSR   AG +FVAI G++ DG  FIP
Sbjct: 9   NLRDLLGPWVPD-----------APARPLRDMTLDSRLAAAGDLFVAIAGHQVDGRRFIP 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILA 119
           QAIAQG  A++  +     D         P++ +    + LS  A R Y +    + ++ 
Sbjct: 58  QAIAQGVAAVIAEAEGEASDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQKLIG 117

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q     G +S  +G     +         TT S + +   L  L 
Sbjct: 118 VTGTNGKTTTTQLLAQWASLLGETSAVMGTVGNGLVGQLVPAENTTGSAVDVQHNLDELV 177

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G +  ++E SSHGL QHR+  +   A  FTNL RDH+DYH   Q Y +AK  LF E  
Sbjct: 178 RKGASLTAMEISSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQQYESAKWLLFSE-- 235

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   AII ADD   +  +    +A        L  G  G+++    V    N   +   
Sbjct: 236 HQVGVAIINADDEVGRRWLANLPDAVAVTMENNLQPGCHGRWLRATDVNYHDNGAHIRFD 295

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L    +L  V GR E      +
Sbjct: 296 SSWGEGEMNSRLMGAFNVSNLLLALATLLALGYALDDLLRVAARLQPVNGRMEVFSATGK 355

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  +FGCGGDRD+GKRP+MG IA   ADI +
Sbjct: 356 -PTVVVDYAHTPDALEKALEAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADIVV 414

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPRSEDP+ I  +I+ G+           R +A+ + I      D+++VAGKGHE 
Sbjct: 415 VTDDNPRSEDPQAIVQDILSGLLDPGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKGHED 474

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ N     S D   +  +LG
Sbjct: 475 YQIIGNQRLDYS-DRATVATLLG 496


>gi|56752479|ref|YP_173180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687438|dbj|BAD80660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
          Length = 502

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/500 (32%), Positives = 236/500 (47%), Gaps = 14/500 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     +++           +  I  + +DSR  Q G +F+ + G + DG  F 
Sbjct: 6   MNLRSLLASTPTQVLQP----QHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFW 61

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+AIA      V+ +  +L     +      +++ D         A+  Y +  +   ++
Sbjct: 62  PEAIAA-GAVAVIVTPTALAQRPLSANPEACLILSDQMPVTAGAIAAAFYNQPAQTLKLI 120

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    V+     +   +  +G        +++  + TTP    L   L+  
Sbjct: 121 GVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQAQLATA 180

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH LDQ R++G       FTNL +DH+DYH T +AYF AK RLF   
Sbjct: 181 VDAGCQAAVMEVSSHALDQGRVNGCGFDVAVFTNLTQDHLDYHGTMEAYFAAKARLFAPP 240

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+I ADDAY + ++       C   SV     F     +       + TI    
Sbjct: 241 YLR-GKAVINADDAYGQRLITMTPPGQCLTYSVVGTADFC-TTDLQYGPTGVEGTIKTPD 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F F  PL G+F + N L A      +G+    +L  +     VPGR E V        
Sbjct: 299 GAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGRMERVVGQDSDPT 358

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G +I VFGCGGDRD+ KRP+MG+IA  LAD  I+T 
Sbjct: 359 VIVDYAHTPDSLENLLKAARPFIQGELICVFGCGGDRDRTKRPLMGEIAARLADRVIITS 418

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP +I A+I+ GIP     + + +R  AIR AI      D +++AGKGHE   I
Sbjct: 419 DNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQI 478

Query: 475 VTNGEKKMSVDCDIIREILG 494
           +    K    D +  R  L 
Sbjct: 479 LGT-TKIHFDDREQARLALA 497


>gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
 gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
          Length = 498

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/509 (31%), Positives = 249/509 (48%), Gaps = 37/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+D+ YK  P L    S+        ++  ++ DSR    G +F+A+ G   DGH +I
Sbjct: 7   MQLKDIFYK-IPLLATSGSM------NTEVTSLTMDSRKAGPGSLFIAVRGTVTDGHAYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI QGA AI+        +  A    +   + V N+ + + L A+  Y +  + +  +
Sbjct: 60  ETAIQQGATAILCE------EIPAETNPDVAYIRVQNSARTMGLVAANFYDQPSQKLKLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SVA+ + ++ +  G     +      I         TTP  I   + L+ +
Sbjct: 114 GVTGTNGKTSVATLLFRLFRALGYRCGLLSTVQNQIDDDVIPATHTTPDVITTNQLLTKM 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G THV +E SSH + Q R+ G+  + G FTN+  DH+D+H T   Y  AK   F++L
Sbjct: 174 LAHGCTHVFMEVSSHAVVQERIAGLSFVGGIFTNITHDHLDFHGTFDNYIRAKKGFFDQL 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+   DD   K  +    N   R  +   Q       K+ A        +++  
Sbjct: 234 -PASAFALTNVDD---KRGLVMLQNTVARKETYSLQTLASFKGKILAD---SLFGLNMLI 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +  F L G+F  YN L   G  I +G D   VL  L  +   PGRFE V ++ +   
Sbjct: 287 DEREVWFKLIGQFNAYNLLSVYGTAILLGEDPTEVLTMLSGITPPPGRFEQVVSDDKIVG 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-------GRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           I  DYAHT ++L+ +L+ I  + S        +II V GCGG+RD  KRPIM  IA  L+
Sbjct: 347 IV-DYAHTPDALQNVLETINELRSTDEQDYMPQIITVVGCGGNRDTSKRPIMADIACRLS 405

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  I+T DNPR+EDP  I  ++  G+        I   +R EAIR A+E+    D+++VA
Sbjct: 406 NRVILTSDNPRNEDPMDILEQMQAGVSPVDFKKTITIEDRHEAIRKAVELAKPHDIILVA 465

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKGHET   +  G K    D  ++R+   
Sbjct: 466 GKGHETYQEIK-GIKYDFDDRVVLRDAFA 493


>gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
 gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
          Length = 495

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/493 (33%), Positives = 254/493 (51%), Gaps = 10/493 (2%)

Query: 9   KDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ELI   L +         I+ +  DSR I++G  FVAI G+  DG  FI +AIAQG
Sbjct: 5   KALSELIAPWLELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++  +           R   P++ +    + LS  A RLYG H   ++ VTGT+GK+
Sbjct: 65  ANIVLAEADAHHAHGQVEFREGVPVIYLAELGQHLSELAGRLYGGHQNQLIGVTGTNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++   + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + +
Sbjct: 125 TITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTA 184

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL Q R+  +  +AG F+NL RDH+DYH T  AY  AK  LF E   +   AII
Sbjct: 185 LETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AII 242

Query: 247 YADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DDA   + +K+  H  G  +L      + I  ++V    +   +       + +   P
Sbjct: 243 NVDDAVGAQWVKQLPHAIGVSLLVQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAP 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF   N L+A    +++G + + +L    +L  V GR E      +  ++ VDYAHT
Sbjct: 303 LIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQK-AKMVVDYAHT 361

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ +R   +G++  +FGCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P
Sbjct: 362 PDALEKALRALRVHCAGQLWAIFGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESP 421

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I A+++ G+        + NR  A   A++    QD++++AGKGHE   ++ N     
Sbjct: 422 QAIVADMLAGLTHPERAHIEHNRFHAASYALQNAGAQDIILLAGKGHEDYQVLANETIHY 481

Query: 483 SVDCDIIREILGL 495
           S D +  +++L L
Sbjct: 482 S-DRETAQQLLEL 493


>gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 810

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/474 (31%), Positives = 226/474 (47%), Gaps = 19/474 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR IQ   IF+A  G   DG L+I  AI  GA  +      + Q       SN PI
Sbjct: 26  LHADSRKIQPNDIFIACQGEYADGRLYIQSAIENGASFVFWEDDGTFQWQPEWAVSNQPI 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS--SFQIG 148
               + ++   + A+ +Y    +  NI  VTGT+GK+S+  ++ Q             IG
Sbjct: 86  ---SDLKQCAGILANAVYQNSTDSLNIFGVTGTNGKTSITQWIAQAIDILENKKSCAIIG 142

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     Q+   TTP P+ +   L      G  H+++E SSHGL Q+R++G+     
Sbjct: 143 TVGNGFFGELQETTHTTPDPVSVQTLLRQFKQLGANHIAMEVSSHGLHQYRVNGVPFKTA 202

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAG 264
            FTNL RDH+DYH +   Y   K RLF     +   AII +DD +  ++   +K+ +   
Sbjct: 203 IFTNLTRDHLDYHNSMAEYGATKARLFHWQGLEN--AIINSDDEFGSKLILQLKQQYADN 260

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             + S G+ +   I + +  A     ++ +     +      L G F   N   A G   
Sbjct: 261 LNIYSYGFNENADIRITEFIANTQGMKIGLQTPWGNGTTQTRLLGRFNAQNFAAAIGALC 320

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TS 381
           A G +    L  L ++    GR + +  N     + VDYAHT ++LE  L  +R I    
Sbjct: 321 ASGFEFQAALNALSQIRPATGRMDCI-INENKPLVVVDYAHTPDALEKALTTLREIQSPE 379

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FI 440
            ++  VFGCGG+RD GKRP+MG +A   +D  IVT DNPR EDP+ I A+I+  +P   +
Sbjct: 380 SKLWCVFGCGGNRDSGKRPLMGAVAAQHSDRPIVTSDNPRMEDPQAIIADILPAVPNAAL 439

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            + +R  AI   I     QD++++AGKGHET   V  G K    D ++    LG
Sbjct: 440 VQVDRQTAIEQTIAQAAPQDIVLIAGKGHETYQDV-QGVKHHFSDFEVAENALG 492


>gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 499

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 169/500 (33%), Positives = 251/500 (50%), Gaps = 26/500 (5%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+  L I      ++  +  +  DSR IQ+G++FVAI G K DGHL+I  A+ +GA 
Sbjct: 3   LAELVAPLKIIARGGNQQVPLTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V++          T+      + VD+TR  L   A+R Y      +  + VTGT+GK+
Sbjct: 63  AVVLAQER-------TLPPGVAWVRVDDTRLALGQLAARFYDYPSRKLRLIGVTGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +Q I +  G  +  +G     +         TTP  + L   L  + S     V 
Sbjct: 116 TTTHLIQAILEAGGRPAGLVGTIGNRLGDRVLPAEHTTPESLDLQHLLYQMVSLQARAVV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKES 242
           +E SSH L  HR+ G +     FTNL +DH+D+H   + YFN K RLF+ L         
Sbjct: 176 MEVSSHALALHRVAGTEFDVAVFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAGPK 235

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            A+I  DD Y   +   A      V++ G   G  +  + +          ++  G +  
Sbjct: 236 YAVINGDDPYGSRL---AALTPVPVVTYGCTPGCQVRARDIHLETGGSTSLVTWPGGEAA 292

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G + +YNAL A  + +  GID  + +  L +   VPGR E V    +   + VD
Sbjct: 293 MELRLTGRYNIYNALAALAVALQEGIDPQVAIRALGRFKGVPGRLERVD-QGQPFTVVVD 351

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + LE +L+  R +T GR++VVFGCGGDRD+GKRP+MG+ A  L+D +I+T DNPR
Sbjct: 352 YAHTPDGLENVLRAARQVTRGRLLVVFGCGGDRDRGKRPLMGRAAARLSDYSIITSDNPR 411

Query: 422 SEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           SEDPE I A+I+ G+       +    +R  AI  A+ +    D++V+AGKGHET  IV 
Sbjct: 412 SEDPEAIIADILPGVREVPGASYQVLVDRRRAIAAALALARPGDMVVIAGKGHETYQIVK 471

Query: 477 NGEKKMSVDCDIIREILGLI 496
           +       D  + RE L  +
Sbjct: 472 DKTLP-FDDRQVAREELAAL 490


>gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
 gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
          Length = 512

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 256/491 (52%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA 
Sbjct: 24  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGAN 83

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 84  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 143

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 144 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 204 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 261

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 262 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 321

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 322 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 380

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 381 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 440

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 441 IVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 499

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 500 DRETAQQLLEL 510


>gi|322834425|ref|YP_004214452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
 gi|321169626|gb|ADW75325.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
          Length = 495

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 244/495 (49%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +        + ++  DSR   AG +FVA+ G+  DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDILAPWVSDAPAVALKDMILDSRVAAAGDLFVAVSGHTSDGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +    Q  +       P++ +++    LS  A R Y +  +   ++ VTGT+GK++ 
Sbjct: 64  VAEAKGEQQHGTVCQMHGVPVVYLEDLNILLSELAGRFYQQPGKELRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L   G T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLDNVIPAENTTGSAVQVQHILADLVKLGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A +FTNL RDH+DYH   Q+Y +AK +LF     +    II A
Sbjct: 184 VSSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMQSYEDAKWQLFAS--HQVGQKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD      + +  NA        +  G+ G+++  + V    N   V I     +     
Sbjct: 242 DDEVGARWLAKTPNAIAVSMEDKIPAGWSGRWLVARSVNYHDNGATVNIDSSWGEGKLES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++    A +L    +L  V GR E      +   +  DYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLDYPLAQLLATASQLQPVCGRMEVFNAPGKPTAVV-DYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G +  VFGCGGDRD+GKRP+MG IA   AD  IVTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCRGTLWCVFGCGGDRDKGKRPLMGAIAEQYADRVIVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I A+I+ G+       E   R EA+ +AI    + DV+++AGKGHE   +V N    
Sbjct: 421 PRAIVADILAGLLDAGRVQEIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 481 YS-DRVTVARLLGVI 494


>gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
 gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
          Length = 486

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/504 (31%), Positives = 250/504 (49%), Gaps = 35/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+     + IN          + +++ ++ DSR  + G +FV I G   DGH +I
Sbjct: 1   MKLRELVMNLNIKAING-------NLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI  G +A +V            +      + +D+TR  L+  +   +G       ++
Sbjct: 54  NDAIENGTKAFLVQKHV-------VVPEGITTIEIDDTRFGLAAVSDAFFGHPSSKFNLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I + +G +   +G  +  I S       TTP    L    S +
Sbjct: 107 GITGTKGKTTTTYMVKAIMEAAGRNMGLVGTLANLIGSEVLYTSRTTPESYDLQSLFSDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
             + V    +E SS GL+ HR+       G FTN  RDHI    H T + YFNAK +LF+
Sbjct: 167 VEKKVDSTVMEVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFK 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
                   A+I  D  + +++ + A    C+V + G   K  I    +         T++
Sbjct: 227 ----MCRKAVINIDSEHGRKMAELAK---CKVFTYGLSDKADIWASDIVKKTGHTYFTLN 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAG-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                 D    L GEF +YNAL A G  C+  GI    V   L K+  VPGR E V T  
Sbjct: 280 SPWGSIDIETDLQGEFNIYNALAAIGSCCLIPGITLEHVRLGLTKVT-VPGRMESVKTGG 338

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + +DYAHT +SLE +LK ++    GR++ +FGCGGDRD+GKRP MG+I+ ++AD  
Sbjct: 339 N-YSVLIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFT 397

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I+T DNPR+E+PE+I  +I  GI      +I+  +R +AI+ A+E     D++++AGKGH
Sbjct: 398 IITSDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAVDGDIIILAGKGH 457

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET             + +++ E+L
Sbjct: 458 ETYQQFAEKTIH-FDEREVVNELL 480


>gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
 gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
          Length = 509

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 256/491 (52%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA 
Sbjct: 21  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGAN 80

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 81  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 140

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 141 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 200

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 201 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 258

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 259 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 318

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 319 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 377

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 378 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 437

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 438 IVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 496

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 497 DRETAQQLLEL 507


>gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetospirillum magneticum AMB-1]
 gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 478

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 197/475 (41%), Positives = 264/475 (55%), Gaps = 7/475 (1%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
               R+  I  +++DSR ++ G++F A+ G K DG  FIP A      A    +  + + 
Sbjct: 4   TAPARDVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAA-----LAAGAVAVLAPEG 58

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               +     ++   N R+  +L AS  +G  P  + AVTGT+GK+S A F +QI  R G
Sbjct: 59  SRPDLPPEVVLVTDANPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLG 118

Query: 142 LSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++  IG    T   +     LTTP P  L   L+ L+  GVTH  +EASSHGLDQHRLD
Sbjct: 119 HAAAAIGTLGITAPGWDNQGGLTTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRLD 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G++L+A +FTNL RDH+DYH    AY  AK+RLF E+LP+ + A+I AD   +   ++  
Sbjct: 179 GVRLMAAAFTNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELC 238

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              G  VL  G   + + L +       Q++ + + G+      PL G FQ  NAL A G
Sbjct: 239 AKRGITVLGFGRTARDLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALG 298

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A G D    LE L  L  VPGR + V + + G  IYVDYAHT ++LE +LK +R   
Sbjct: 299 LALACGADPVAALEALGHLDGVPGRLQQVASRANGAPIYVDYAHTPDALETVLKALRPHA 358

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + R++ VFGCGGDRD GKRP+MG I   LAD  IVTDDNPRSEDP  IRA +    P  I
Sbjct: 359 ARRLVAVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGI 418

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           E  +R  AIR A+  L K DVLV+AGKGHE   IV         D    R+ + L
Sbjct: 419 EIADRRGAIRAAVSGLQKGDVLVIAGKGHEQGQIVGASVLP-FDDAAEARDAVRL 472


>gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
 gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
          Length = 486

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/478 (31%), Positives = 243/478 (50%), Gaps = 31/478 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            I ++  DSR ++   +F A+ G + DGH +I QAI QGA AI+        D       
Sbjct: 22  DIIDIQIDSRGVKKQSLFAALRGTQVDGHQYINQAIKQGAVAILCE------DLPEQKNK 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   + V ++   L + AS  Y      +  + VTGT+GK++VA+ + +  ++ G  +  
Sbjct: 76  DITYIQVPHSEAALGILASTFYDNPSSKLKLVGVTGTNGKTTVATILYKTFKKLGYKA-- 133

Query: 147 IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G  ST+ ++  D       TTP  + + K L  +  +G  +  +E SSH +DQ R+ G+
Sbjct: 134 -GLLSTVCNYIDDEALETTHTTPDAVTINKLLHDMVLRGCDYAFMEVSSHAIDQKRISGL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G FTNL RDH+DYH+T   Y  AK   F+ L PK + +++  DD     +++   +
Sbjct: 193 KFAGGIFTNLTRDHLDYHKTIANYIKAKKEFFDNL-PKNAFSLVNLDDKNGMVMVQNTKS 251

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A   + +   +       +V   H    +   +E  + D +    G+F VYN L   G  
Sbjct: 252 A---IHTYSLRSLCDFKARVIESHFNGMI---LEINNTDVVVQFTGKFNVYNLLAVYGTA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--T 380
             +G  +  VL  +  L  V GRFE +    +G  + VDYAHT ++L  +L  I  I   
Sbjct: 306 CLLGQKADEVLIAISTLKSVSGRFETLQAP-KGYTVIVDYAHTPDALTNVLTTIHDILDG 364

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---- 436
            G++I V G GG+RD+GKRP+M K ++  +D  I+T DNPR EDP++I  +++ G+    
Sbjct: 365 KGKVITVVGAGGNRDKGKRPLMAKESIKNSDTVIITSDNPRFEDPQEIIKDMLDGLNTEE 424

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +   NR +AI+TA  +    DV+++AGKGHET   +  G K    D + +R I 
Sbjct: 425 KQNVLTIENRRDAIKTACMLAKTNDVILIAGKGHETYQNI-QGVKHHFDDKEEVRNIF 481


>gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 471

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/481 (33%), Positives = 251/481 (52%), Gaps = 25/481 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           + +E  ++ V SDSR I+AG++FVAIVG + DGH  I ++I  GA+ I+  +        
Sbjct: 6   EGKELSLSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIICQT------LP 59

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
            T+R +   + V ++ K L    S   G+  + +  + VTGT+GK++V + + ++ ++ G
Sbjct: 60  VTLRPDVTYICVKDSAKALGQIVSLWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRKLG 119

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                I      I+        TTP  I L   L  + S+G  +V +E SSH +DQ R+ 
Sbjct: 120 YKVGLISTICNCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAIDQKRIA 179

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G++   G FTNL RDH+DYH+T   Y + K   F+ LLP  + A+   DD     +++  
Sbjct: 180 GLQFKGGIFTNLTRDHLDYHKTFDIYRDVKKTFFD-LLPTGAFALANKDDKNGAFMLQN- 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A  +  S+     F   + + +  N   +TI+    D +    L G+F  YN L   G
Sbjct: 238 TKAHKKFYSLQSLADFKS-RILESHFNGTLMTIN----DKELSTLLVGKFNAYNLLAIYG 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
             I +G +S  +L  L  L  V GRFE +   SRG  + VDYAHT ++L  +L  I  I 
Sbjct: 293 TAILLGQNSDEILVLLSVLRPVIGRFETLNA-SRGFTVIVDYAHTPDALINVLNTINEIL 351

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G+II V GCGG+RD+GKR IM + A+ L+   I+T DNPR E+P  I  +++ G+  
Sbjct: 352 ARKGKIITVIGCGGNRDKGKRSIMAREAVRLSQKVILTSDNPRFEEPGDIIEDMLAGLDD 411

Query: 439 F-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 I   +R EAIRTA  +    D++++AGKGHE    +  G K    D  ++ EI+
Sbjct: 412 IQQKETICIVDRKEAIRTACLLAQPNDIVLIAGKGHEDYQEIK-GVKNHFNDKKVVMEII 470

Query: 494 G 494
            
Sbjct: 471 N 471


>gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella kingae ATCC 23330]
          Length = 491

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/471 (31%), Positives = 227/471 (48%), Gaps = 18/471 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR IQ   +F+A  G   DG  +I  AI +GA  +   +     DF        P 
Sbjct: 26  LHSDSRKIQPNDVFIACQGEYADGRNYIQSAIEKGAAFVYWDADG---DFVWNENWQIPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +   R+   + A+ +YG      NI+ VTGT+GK+S+  ++ Q        S      
Sbjct: 83  QPIAELRQRAGILANSVYGNVSGSLNIIGVTGTNGKTSITQWLAQAIDILENKSACA-II 141

Query: 151 STISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T+ +       +   TTP P+ +   L      G +H+++E SSHGL Q R++G+    
Sbjct: 142 GTVGNGYWGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFRVNGVPFQT 201

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH + + Y  AK RLF     +   AII +DD +  +++     +   
Sbjct: 202 AIFTNLTRDHLDYHNSMEEYGEAKARLFHWQGLQN--AIINSDDEFGAKLVAELKQSSLH 259

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V S G+ +   I + +  A     ++ +     +      L G F   N   A G   A 
Sbjct: 260 VYSYGFNEHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNFAAALGALCAE 319

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--R 383
           G      L+ L ++    GR + +   ++   + VDYAHT ++LE  L  +R I     +
Sbjct: 320 GYAFQAALKALAQIRAATGRMDCIIRENK-PLVVVDYAHTPDALEKALSTLREIQQPESQ 378

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEK 442
           +  VFGCGG+RD+GKRP+MG +A   AD  +VT DNPR EDP  I A+I+  +P   + +
Sbjct: 379 LWCVFGCGGNRDRGKRPLMGAVAAQGADKVVVTSDNPRMEDPNAIIADILPTVPNAALVQ 438

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R  AI   I     QD++++AGKGHET   V  G K    D +I +  L
Sbjct: 439 VDRQTAIEQTIAQAAPQDIVLIAGKGHETYQDV-QGVKHHFSDFEIAQLAL 488


>gi|81300293|ref|YP_400501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
 gi|123556803|sp|Q31N55|MURE_SYNE7 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81169174|gb|ABB57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
          Length = 497

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/500 (32%), Positives = 236/500 (47%), Gaps = 14/500 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     +++           +  I  + +DSR  Q G +F+ + G + DG  F 
Sbjct: 1   MNLRSLLASTPTQVLQP----QHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+AIA      V+ +  +L     +      +++ D         A+  Y +  +   ++
Sbjct: 57  PEAIAA-GAVAVIVTPTALAQRPLSANPEACLILSDQMPVTAGAIAAAFYNQPAQTLKLI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    V+     +   +  +G        +++  + TTP    L   L+  
Sbjct: 116 GVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQAQLATA 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH LDQ R++G       FTNL +DH+DYH T +AYF AK RLF   
Sbjct: 176 VDAGCQAAVMEVSSHALDQGRVNGCGFDVAVFTNLTQDHLDYHGTMEAYFAAKARLFAPP 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+I ADDAY + ++       C   SV     F     +       + TI    
Sbjct: 236 YLR-GKAVINADDAYGQRLITMTPPGQCLTYSVVGTADFC-TTDLQYGPTGVEGTIKTPD 293

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F F  PL G+F + N L A      +G+    +L  +     VPGR E V        
Sbjct: 294 GAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGRMERVVGQDSDPT 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G +I VFGCGGDRD+ KRP+MG+IA  LAD  I+T 
Sbjct: 354 VIVDYAHTPDSLENLLKAARPFIQGELICVFGCGGDRDRTKRPLMGEIAARLADRVIITS 413

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP +I A+I+ GIP     + + +R  AIR AI      D +++AGKGHE   I
Sbjct: 414 DNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQI 473

Query: 475 VTNGEKKMSVDCDIIREILG 494
           +    K    D +  R  L 
Sbjct: 474 LGT-TKIHFDDREQARLALA 492


>gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
 gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
          Length = 493

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/500 (30%), Positives = 243/500 (48%), Gaps = 26/500 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L+  ++I      +  I  +  DSR I+ G +F A  G K DG  FI  AI +GA A
Sbjct: 3   LSQLLRGMNI--SIATDPIIKGLCQDSRQIKPGDLFFAYKGLKSDGRYFIKDAIKKGAAA 60

Query: 71  IVVSSAYSLQDFSATIRSN-TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           I+V      ++++  ++S+  PI+ + +    L   A+R YG       ++ +TGT+GK+
Sbjct: 61  ILVEPD---ENYTIHLKSSSIPIIALHHLTSQLGSLAARFYGYPSRYLPVIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S   F+    Q+   S   IG          +  +LTTP  I L + L+   +Q    V 
Sbjct: 118 SCTHFLADSLQKLQRSCGVIGTLGNGFYGHLKRAQLTTPDAIELQQLLAAFRAQHAQTVV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q RL+G +    + TNL RDH+DYH+T  AY  AK   FE  LP     ++
Sbjct: 178 MEVSSHRLAQKRLNGTEFSVAALTNLTRDHLDYHKTMDAYAKAKRSFFE--LPGVQHIVL 235

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHL-----KKVCAIHNKQQVTISVEGK 298
            ADD Y++  +         + +      Q ++ H+     KK        Q  I     
Sbjct: 236 NADDPYAQLWLTEFEK-QLPISTYSLKRPQARWSHIPQVTVKKFDFNQQGLQAEIDTPWG 294

Query: 299 DFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           D       L G F + N L+   +  ++    A + + L +L    GR +      +   
Sbjct: 295 DVFIENQFLMGAFNLSNLLLVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTFRVKGK-AI 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L+ +L+ +R+   G++  +FGCGGDRD+GKRP+M  IA + AD  IVT+
Sbjct: 354 VVVDYAHTPDALQQVLQALRSHCRGQLYCLFGCGGDRDKGKRPLMAAIAEEGADHIIVTN 413

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR EDP +I  +I  G  G      +  R +AI  A++     D++++AGKGHE+   
Sbjct: 414 DNPRYEDPFQIFQDIRQGFKGNKAIYYEPERKKAIAYALKAAQPSDIVLIAGKGHESYQS 473

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + +G      D   ++  L 
Sbjct: 474 I-HGINYPFDDAVEVQHFLN 492


>gi|323160117|gb|EFZ46078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli E128010]
          Length = 471

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 246/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|327255063|gb|EGE66666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli STEC_7v]
          Length = 471

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 246/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV+++AGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLIAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
 gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
          Length = 495

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/493 (32%), Positives = 255/493 (51%), Gaps = 10/493 (2%)

Query: 9   KDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ELI   L +         I+ +  DSR I++G  FVAI G+  DG  FI +AIAQG
Sbjct: 5   KALSELIAPWLELADTDLASLAISRLELDSRQIKSGETFVAIQGHAVDGRQFIDKAIAQG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++  +           R   P++ +    + LS  A RLYG H   ++  TGT+GK+
Sbjct: 65  ANIVLAEADAHHVHGQVEFREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGATGTNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++   + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + +
Sbjct: 125 TITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTA 184

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL Q R+  +  +AG F+NL RDH+DYH T  AY  AK  LF E   +   AII
Sbjct: 185 LETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AII 242

Query: 247 YADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DDA   + +K+  H  G  +L+     + I  ++V    +   +       + +   P
Sbjct: 243 NVDDAVGAQWVKQLPHAIGISLLAQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAP 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF   N L+A    +++G + + +L    +L  V GR E      +  ++ VDYAHT
Sbjct: 303 LIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQK-AKMVVDYAHT 361

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ +R   +G++  +FGCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P
Sbjct: 362 PDALEKALRALRVHCAGQLWAIFGCGGDRDRGKRPMMAAIAEQYADRVILTDDNPRSESP 421

Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I A+++ G+        + NR +A   A++    QD++++AGKGHE   ++ N     
Sbjct: 422 QAIVADMLAGLTHPELAHIEHNRFQAASYALQNAGAQDIILLAGKGHEDYQVLANETIHY 481

Query: 483 SVDCDIIREILGL 495
           S D +  +++L L
Sbjct: 482 S-DRETAQQLLEL 493


>gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter litoralis HTCC2594]
 gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 495

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 180/502 (35%), Positives = 267/502 (53%), Gaps = 22/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL          L     I      +  ++  + D R +  G +F A  G+  +G  +I
Sbjct: 1   MKL--------ARLAEAAGIAIEGGEDIAVSGFAIDHRKVAPGTVFGAFQGSAVNGEDYI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+A        + A ++             +  D  R+  +L A++ +   P+ I+AV
Sbjct: 53  SQAVA--------AGAVAVVAQPEATVEGAVHIAEDTPRRAFALLAAQYFTPVPKTIVAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ + +G  +  IG    T    +    LTTP  +     +S L+ 
Sbjct: 105 TGTNGKTSTVEMTRQLWRMAGERAASIGTLGVTTPDESVSTGLTTPDIVTFLSNMSGLAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV+ EASSHGL Q+R +G+ + A +FTN  RDH+DYH T   YF AKMRLF+E++ 
Sbjct: 165 EGVTHVAYEASSHGLSQYRNEGLPVAAAAFTNFSRDHLDYHGTMDEYFEAKMRLFDEVVD 224

Query: 240 KESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
               A+++  +  ++ + ++RA     R+ +VG QG+ I L+        Q++ I   G+
Sbjct: 225 AGGTAVVWTGNSEWTAQAIERARQRELRLFTVGEQGEDIRLRARTPTQLGQELEIEHAGE 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL GE+QV NAL AAGL IA G D A V + + +L  V GR E     + G  +
Sbjct: 285 TRKLRLPLIGEYQVANALTAAGLAIATGTDPAAVWDGVSRLQPVRGRLERAVITATGAPV 344

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAHT ++LE  L  +R    GR++ +FG GGDRD GKR  MG++A  +AD  IVTDD
Sbjct: 345 YVDYAHTPDALEAALAALRPHVEGRLLCIFGAGGDRDTGKRAPMGEVASRMADAVIVTDD 404

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NPR EDP  IR +++ G      E  +R EAIR  IE    +D++++AGKGHET  I+ +
Sbjct: 405 NPRGEDPAAIRGQVLEGAGDNAREMADRREAIREVIESAAAKDIVLIAGKGHETGQIIGS 464

Query: 478 GE---KKMSVDCDIIREILGLI 496
           GE    +   D  + RE    I
Sbjct: 465 GENMRVEPFDDVQVARECAAQI 486


>gi|307629659|gb|ADN73963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UM146]
 gi|315285169|gb|EFU44614.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 110-3]
          Length = 471

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
 gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
          Length = 496

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/500 (30%), Positives = 255/500 (51%), Gaps = 27/500 (5%)

Query: 9   KDFPELINQLSIFPMQW--RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +   ++I+ +    +    + + I +++ DSR    G +F+ +VG   DGH +I +A + 
Sbjct: 3   RTLQDVISHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASL 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GAEA++V                  ++ V +T++ ++  A   Y    + +  + +TGT+
Sbjct: 63  GAEAVLVEKDVP-------PVPGLVMIRVKSTQETMTELAPWFYDYPAQKMRMIGITGTN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  + ++ +   +G     IG  +  I    + +  TTP  + L + L  ++  G  
Sbjct: 116 GKTTTTNILRTLLTNTGHKVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGCD 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PK 240
           +V +E SSH L  +R+ GI+    + TN+ +DH+D+H+T + Y  AK  LF  L     K
Sbjct: 176 YVVMEVSSHALALNRVAGIEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRKK 235

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              AI   DDA S  +M R      +V++ G  +   ++  +        ++++     +
Sbjct: 236 GKTAIFNMDDASSPLIMNRVKT---KVMTYGKARTNDVYPIRFHVGAKHMELSLHTPEGN 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D    + GEF VYN + A    +A G+    ++  L+    VPGRF+ +    +   + 
Sbjct: 293 MDLRLHITGEFNVYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPGRFQLIDA-GQPFTVI 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L+ +L+  R IT GR+  VFGCGGDRD  KRPIMGK+AL+LADI +VT DN
Sbjct: 352 VDYAHTPDGLDNVLRTARQITKGRLWAVFGCGGDRDAKKRPIMGKLALELADILVVTSDN 411

Query: 420 PRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PRSEDP+ I  +I  G              +R EAI+ AI     +DV+++AGKGHE   
Sbjct: 412 PRSEDPDTIIRDIETGFSDNPQHKEIYTISDRREAIQFAISHARPEDVIMIAGKGHENYQ 471

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       D +++R+  
Sbjct: 472 ILKDRTIH-FDDGEVVRDFF 490


>gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida GB-1]
 gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1]
          Length = 496

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/490 (33%), Positives = 242/490 (49%), Gaps = 22/490 (4%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    AY 
Sbjct: 8   KLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAV----AYE 63

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            Q  +    +  P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q 
Sbjct: 64  EQGATVLPLTEVPLIPVKGLIAQLSDVAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQA 123

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G     IG   T      Q  RLTTP PI +   L  L  QG   V++E SSH L+
Sbjct: 124 LDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSHALE 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DDA+ + 
Sbjct: 184 QGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDAFGRR 241

Query: 256 VMKR------AHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +           +   R+LS   +     L  ++     +  + TI     +      L 
Sbjct: 242 LAADFARRPSVDHIDTRLLSYSLENPDASLFCREAAFSDDGVRATIVTAQGERILRSQLL 301

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A    +A+      +L+   +LH   GR + +G       + VDYAHT +
Sbjct: 302 GRFNLSNMLAAVATLLALDYALDEILKVTPQLHGPVGRMQRLG-GGDKPLVVVDYAHTPD 360

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+EDP++
Sbjct: 361 ALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPQR 420

Query: 428 IRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I  G    +       R EAI   I      DV+V+AGKGHE    + NGE+    
Sbjct: 421 IFDDIRPGFARPVSVEFVAGRGEAIAQLIASAAANDVIVLAGKGHEDYQEI-NGERHDFS 479

Query: 485 DCDIIREILG 494
           D     + L 
Sbjct: 480 DLTEAEKALA 489


>gi|332098940|gb|EGJ03891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 3594-74]
          Length = 471

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++ +  V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVFTVPGK-PTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
 gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
          Length = 500

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/510 (36%), Positives = 273/510 (53%), Gaps = 30/510 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL          LI +  +      +  +   + D R +  G +F A  G   +   FI
Sbjct: 1   MKL--------AALIERAGLPEADAGDATVTGFAIDHRKVAPGTVFGAFRGANFNAEDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P AI  GA AIV  S   ++            +  +  R+  +  A+  +   PE I+AV
Sbjct: 53  PAAIEAGAVAIVARSEAKVE--------GALHIASEEPRRDFAQLAAGFFTPAPETIVAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S A   +QI +  G  +  IG    T    +    LTTP  +     +S L+ 
Sbjct: 105 TGTNGKTSTAEMTRQIWRMCGERAASIGTLGVTTPDGSVSTGLTTPDIVTFLSNMSGLAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV+ EASSHGL Q+R +G+++ AG+FTN  RDH+DYH+T  AYF AKMRLF+E++ 
Sbjct: 165 EGVTHVAYEASSHGLSQYRNEGLRVKAGAFTNFSRDHLDYHETMDAYFEAKMRLFDEVVE 224

Query: 240 KESPAIIYA---DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           ++  AII+    +  +++  ++ A +    VL+VG +G F+ L    A    Q + +  +
Sbjct: 225 EDGKAIIWDGGEECEWTRRAIEHALSRKLHVLTVGERGDFLRLAAREATQLGQVLDVEYD 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+      PL G +Q  NALV+AGL IA G   A V + + +L  V GR E     + G 
Sbjct: 285 GESRKVKLPLIGAYQAANALVSAGLAIATGAAPAQVFDAIGRLQPVRGRLERACLTASGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +Y+DYAHT ++LE  +  +R        G++IVVFG GGDRD GKR  MGK+A D AD+
Sbjct: 345 PVYIDYAHTPDALEAAIAALRPHVDGEKGGKLIVVFGAGGDRDTGKRAPMGKVAADSADL 404

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I+TDDNPR EDP +IRA ++ G  G       G R EAI  AI  +   D+++VAGKGH
Sbjct: 405 VIITDDNPRGEDPGEIRAAVLEGAGGADHVRAIGGRREAIAAAIGQVGAHDIILVAGKGH 464

Query: 470 ETVHIVTNGE---KKMSVDCDIIREILGLI 496
           E   I+ +GE        D ++ RE   L+
Sbjct: 465 EQGQIIGSGETMRVMPFDDVEVARECAALV 494


>gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 482

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/490 (33%), Positives = 260/490 (53%), Gaps = 29/490 (5%)

Query: 21  FPMQWRERKINE----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +P++  E ++ +    +  DSR ++ G +FVA+ G+  DG LFIP A+++GA  IV    
Sbjct: 4   YPLKALESELEKKHMLICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGAAYIVC-RH 62

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQ 134
             ++   + I      +VVD+ R  L   A   Y  G     I+ VTGT+GK+++   ++
Sbjct: 63  NEVEYCGSAIP-----IVVDDPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLE 117

Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            + +  G  +  IG  +     F+++  LTTP  + L   L+ +       V +E SSH 
Sbjct: 118 YLFRAKGNRTGVIGTIAYRWPGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHA 177

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           LDQ R+ GI      FTNL +DH+DYH+  + YF+AK RLF E   K    +   D+ + 
Sbjct: 178 LDQRRIAGISFKGVIFTNLTQDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQWG 237

Query: 254 KEVMKRAHNAGCRVLSVGYQGK------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +++ K        ++  G++ K      ++  K + +      + +S + K ++   PL 
Sbjct: 238 RKLAKLVPE----IIGFGFKNKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLV 293

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L    + + +G+         EK   VPGR E +  N +   I+VDYAHT +
Sbjct: 294 GVHNAENLLAVQAISLQLGLAPEDFCC-FEKFTGVPGRLERI-VNKKQLDIFVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +L  +R +   RII VFGCGG+RD+ KRP+MGK    L+D+A++T DNPR+EDPE 
Sbjct: 352 ALINVLSALRDVGFKRIITVFGCGGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPEL 411

Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+      I + +R +AIR AIE+++  D L+VAGKGHE    +    K    
Sbjct: 412 IMADVLPGLKKAKQIITEPDREKAIRQAIELVSPGDALLVAGKGHECTQQI-GFMKYPFS 470

Query: 485 DCDIIREILG 494
           D  +IR+ILG
Sbjct: 471 DQSVIRKILG 480


>gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
 gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
          Length = 512

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 255/491 (51%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA 
Sbjct: 24  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGAN 83

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 84  VVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTI 143

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 144 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 204 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 261

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 262 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 321

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 322 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 380

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 381 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 440

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 441 IVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 499

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 500 DRETAQQLLEL 510


>gi|309796075|ref|ZP_07690487.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
 gi|308120317|gb|EFO57579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
          Length = 471

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|323157848|gb|EFZ43951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli EPECa14]
          Length = 471

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 246/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
 gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
          Length = 481

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/506 (30%), Positives = 251/506 (49%), Gaps = 38/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++      L+  +        +  ++ +  DSR ++A  +FVA  G   DGH +I
Sbjct: 1   MMLDDILQNVI--LLKTIGNI-----DINVSGIQFDSRKVEAENVFVATRGTASDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI  GA AIV        +  + I  N   + V+++   L   AS  Y        ++
Sbjct: 54  ATAIENGAVAIVCE------ELPSEINPNITYVKVEDSSDALGKMASAWYDFPSTKMTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKAL 174
            VTGT+GK+++A+ + Q+ +  G  S   G  ST+ ++  D       TTP  + L   L
Sbjct: 108 GVTGTNGKTTIATLLYQLFRELGHKS---GLLSTVCNYVNDLAVEATHTTPDALALNALL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +   G  +  +E SSH +DQHR+ G++     FTN+ RDHIDYH T + Y  AK + F
Sbjct: 165 AQMVDAGCEYAFMEVSSHSIDQHRISGLEFDGAIFTNITRDHIDYHLTFENYLKAKKQFF 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   ++ A+  ADD      +    N+  +  +   +G      ++     +  +   
Sbjct: 225 DNL-STDAFALTNADDKNG---LVMLQNSKAKKYTYSLRGMADFKTRILEHGFEGML--- 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  D +      G+F   N     G  + +G D   VL  +  LH V GRFE + + + 
Sbjct: 278 LDMNDKEVNVSFIGKFNASNLSAVFGAAVLLGQDELEVLRIISSLHSVSGRFETLHSPA- 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G    VDYAHT ++L  ++  I  I   +GR+I V GCGG+RD+GKRP+M + A++ +  
Sbjct: 337 GYTAIVDYAHTPDALVNVIGTINQILQGNGRLITVVGCGGNRDKGKRPMMAREAVNGSWK 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AI+T DNPR E+P++I  +++ G+        +   +R EAI+TA  +    DV++VAGK
Sbjct: 397 AILTSDNPRFEEPQEILNDMLAGLDVVEKAKSLTIVDRREAIKTACALAQAGDVVLVAGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE   I+  G K    D + +R+  
Sbjct: 457 GHEDYQII-QGVKHHFDDREEVRKCF 481


>gi|260596510|ref|YP_003209081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter turicensis z3032]
 gi|260215687|emb|CBA28019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cronobacter turicensis z3032]
          Length = 501

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/495 (34%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 10  RNLRDLLAPWVAGLPARALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 69

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           V  +     D         P++ +    + LS  A R Y +  + +  + VTGT+GK++ 
Sbjct: 70  VAEAKGEATDGEVREIHGVPVIYLSQLNERLSALAGRFYDEPSDRLRLIGVTGTNGKTTT 129

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q CQR G +S  +G     +         TT S + +   LS L++QG T  ++E
Sbjct: 130 TQLIAQWCQRLGETSAVMGTVGNGLLGKVSPTENTTGSAVDVQHVLSGLAAQGATVAAME 189

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  LF         A+I A
Sbjct: 190 VSSHGLVQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFSA--HHYGQAVINA 247

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++    V        +  S    D +   
Sbjct: 248 DDEVGRRWLAKLPDAVAVSMENNINPDCHGRWLRADAVEYHDRGATLRFSSSWGDGEIES 307

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A G  +A+    A +LE   +L  V GR E      +   + VDYAH
Sbjct: 308 RLMGAFNVSNLLLALGTLLALDYPLAALLESAPRLQPVNGRMEVFSAPGK-PTVVVDYAH 366

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+ED
Sbjct: 367 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTED 426

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I A+I+ G+           R EA+  AI    + DV+++AGKGHE   IV      
Sbjct: 427 PRAIIADILTGMLDAGRARVVEGRAEAVTNAIMQAAENDVVLLAGKGHEDYQIVGTRRLD 486

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG +
Sbjct: 487 YS-DRVTAARLLGAV 500


>gi|220925313|ref|YP_002500615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
 gi|219949920|gb|ACL60312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
          Length = 488

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/493 (43%), Positives = 282/493 (57%), Gaps = 18/493 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +   +   FPE     +  P       +  +++DSR ++ G++FVA+ G   DG  F 
Sbjct: 1   MSMATTLGALFPEAAGPEAGIP-------VTGLTADSRRVRPGFVFVAVPGTTMDGRSFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A GA A+V             + +    L V + R+ L+L A+RL+ + PE I+AV
Sbjct: 54  TAAAAAGAVAMVTEGPR-----PEALPAEVAYLAVPDARRALALAAARLFARQPETIVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGKSSVA FV+Q+  R G  S  +G    +    A    LTTP P+ L + L  L+ 
Sbjct: 109 TGTSGKSSVADFVRQVLARLGRRSASLGTLGVVTGEGAAYGSLTTPDPVTLHETLDRLAG 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+T +++EASSHG++Q RLDG++L A +FTNLG DH+DYH T +AY  AK+RLFE LLP
Sbjct: 169 DGITDLAMEASSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHHTPEAYLTAKLRLFETLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + AI+ AD   +  V       G  +++ G  G+ + L  V      Q +TI  EG+ 
Sbjct: 229 DAATAIVNADGPMADRVAASVRARGLPLVTTGLSGETLRLSAVETRGFAQALTIKAEGRA 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    PL G FQV NALVAAGL +A          V+  L  L  VPGR E V T   G 
Sbjct: 289 YQVDLPLVGGFQVENALVAAGLVLATPAGRGRLPEVVAALGHLAGVPGRLERVAT-HNGA 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              VDYAH   +L  +L+ +R  T+GR++ V GCGGDRD+ KRP+MG+IA+  AD  IVT
Sbjct: 348 LCVVDYAHKPEALAGVLQALRPFTTGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVT 407

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRAEI+   PG  E G+R EAIRTA+  L   DVLVVAGKGHET  I+ 
Sbjct: 408 DDNPRSEDPAAIRAEILAAAPGAEEIGDRAEAIRTAVRGLGPGDVLVVAGKGHETGQIIG 467

Query: 477 NGEKKMSVDCDII 489
           N       D D +
Sbjct: 468 N-RTLPFSDRDAV 479


>gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
 gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
          Length = 509

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/495 (31%), Positives = 236/495 (47%), Gaps = 14/495 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K    L   +          +I  +S DSR I  G +F A+ G+  DG  FI  AI++
Sbjct: 10  TAKRLQTLFENVVCERATEHNPEITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISR 69

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A+V  ++      S  + ++ P+++V N  + LSL A   Y        ++ VTGT+
Sbjct: 70  GATAVVADASDDFDFSS--VPNDIPLVLVKNLGRTLSLIAGNFYDHPSRSVRVIGVTGTN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           GK++    + Q+  + G  +  IG        S  QD  LTTP  I   + L+ L + G 
Sbjct: 128 GKTTCVQLLMQLFNQLGEKAASIGTMGYGFSQSALQDFGLTTPDAIACQRVLAQLRNAGA 187

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T V++E SSH L+Q R+D +      FTN+ RDH+DYH T + Y  AK RLF        
Sbjct: 188 TFVAMEVSSHALEQGRVDAVNFEGAVFTNISRDHLDYHGTFEHYIAAKSRLFT--FDALR 245

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD+ S+ +   +      +      G  +  K +          IS    + + 
Sbjct: 246 FAVINGDDSASRALSAASTAESSFLYGA-ESGNTVVAKDIALSPEGVAAKISSAWGEANI 304

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F + N L       A G     V E ++ L    GR + +  +     + VDY
Sbjct: 305 QSCLIGNFNILNLLAVITTACAAGYSLPAVAEQVQHLQPARGRMQRIVVDGGDVTVCVDY 364

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L  +R   +  + VVFGCGGDRD+GKR  MG+IA + AD  +VT DNPR+
Sbjct: 365 AHTPDALEKALLALRAQAANDVWVVFGCGGDRDKGKRAQMGRIAAEHADAVVVTSDNPRT 424

Query: 423 EDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           E P  I  +++ GIP   ++     +R  AI  AI      D +++AGKGHE   IV   
Sbjct: 425 ETPACIIDDVLSGIPASDKRVTNFEDRSAAIEFAILQAKSGDTVLIAGKGHEDYQIVGT- 483

Query: 479 EKKMSVDCDIIREIL 493
            K+   DC++  + L
Sbjct: 484 AKRHFDDCEVSSQCL 498


>gi|300905494|ref|ZP_07123258.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300923133|ref|ZP_07139193.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|301303815|ref|ZP_07209935.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|301330134|ref|ZP_07222803.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|300402644|gb|EFJ86182.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300420588|gb|EFK03899.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|300840942|gb|EFK68702.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|300843881|gb|EFK71641.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|315253159|gb|EFU33127.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 85-1]
          Length = 471

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 246/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|317970555|ref|ZP_07971945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0205]
          Length = 503

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/498 (30%), Positives = 239/498 (47%), Gaps = 19/498 (3%)

Query: 11  FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L+ ++ +  P       +  VS DSR +  G +FV + G   DG  F P+A+  GA 
Sbjct: 5   LHSLLREVGLAVPPGLGNGDVQGVSCDSRRVCPGTVFVGLPGATVDGGTFWPEALQLGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
             V+  + +     A       +LVV +   ++  L A+  + +  +   ++ VTGT+GK
Sbjct: 65  LAVIGRSAAEARPPA---DGDAVLVVSDPVSRWAGLLAAEFWQQPSQRTALIGVTGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ +    G  +   G   +     +   + TT     L   L+  +  G    
Sbjct: 122 TTTTYLLEHLASACGYPAALFGTLINRWPGHSITAQHTTAFADELQAQLALAAESGARIA 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPA 244
           ++E SSH LDQ R+ G +     FTNL +DH+DYH + +AYF AK +LF   LL  E+ A
Sbjct: 182 AMEVSSHALDQQRISGCRFAGAIFTNLTQDHLDYHPSMEAYFEAKAKLFAAPLLAPEARA 241

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD + K++ +R  +   R          + ++ +         T+        F  
Sbjct: 242 VVNVDDPWGKQLAERLGDRCWRASLEPDSDADLRMEALQMGSQGVSGTLITPLGRGAFSS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG------GRI 358
           PL G+F + N L A G+ +  G+    +LE L     VPGR E V              +
Sbjct: 302 PLLGKFNLMNLLEAVGVLLQQGLPLGAMLEALGSFKGVPGRMERVQVARADCGDAAAPAV 361

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE  LK  R    G++I VFGCGGDRD+ KRP M  IA  LAD  +VT D
Sbjct: 362 LVDYAHTPDGLESALKACRPFVEGQLICVFGCGGDRDRTKRPQMAAIAARLADQVLVTSD 421

Query: 419 NPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+EDPE+I  +++ GIP         +R ++I  AI M   +D++++AGKGHE   I+
Sbjct: 422 NPRTEDPEQILKDVLAGIPEGTPVQVDVDRAQSIAAAIAMAGPKDLVLIAGKGHEDYQIL 481

Query: 476 TNGEKKMSVDCDIIREIL 493
              +K    D +   + L
Sbjct: 482 GT-KKVHFDDREEAEKAL 498


>gi|300949897|ref|ZP_07163860.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|300955951|ref|ZP_07168284.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|301646397|ref|ZP_07246279.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|312970179|ref|ZP_07784361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|300317171|gb|EFJ66955.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|300450729|gb|EFK14349.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|301075367|gb|EFK90173.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|310337677|gb|EFQ02788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|315616136|gb|EFU96755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 3431]
 gi|323171248|gb|EFZ56896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli LT-68]
 gi|325496021|gb|EGC93880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia fergusonii ECD227]
          Length = 471

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/474 (35%), Positives = 246/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
 gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
          Length = 512

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 255/491 (51%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA 
Sbjct: 24  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGAN 83

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 84  VVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 143

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 144 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 204 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 261

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 262 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 321

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 322 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 380

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 381 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 440

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 441 IVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 499

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 500 DRETAQQLLEL 510


>gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
 gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
          Length = 486

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/507 (30%), Positives = 251/507 (49%), Gaps = 37/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +    L+           + +I+ +  DSR ++   +FV I G   DGH FI
Sbjct: 1   MKLSKLLERSEYTLV-------QGTEDTEISTLVYDSRKVEENSVFVCISGAAFDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            Q I +GA+ IVV                  ++  D+TRK L+  ++  +G   E ++  
Sbjct: 54  GQVIEKGAKVIVVQQDVEA-------PKGVTVIRFDDTRKALAEMSAAYFGYPAEELMTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK+++   +Q + + +G  +  IG   T I      +  TTP    + ++   +
Sbjct: 107 GITGTKGKTTITYMIQSVLEHAGQKTGLIGTIETVIGDERIPSVNTTPESYVIQESFRKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
           +  G  +V +E SS GL  HR+ G     G FTNL  DHI    H+    Y   K  LF+
Sbjct: 167 ADAGCKNVVMEVSSQGLMLHRVSGFTFDYGIFTNLAEDHIGENEHKDMDDYIRCKSLLFQ 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           +        I+  DD Y + ++K      C + + G + G  ++   +  I     + +S
Sbjct: 227 QC----RQGIVNGDDDYVERIIK---GHTCSLETFGMKPGSDVYADHIERIQEPGYLGVS 279

Query: 295 VE---GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    ++++    +PG+F VYN+L A  LC  +GI    VL+ L  +  V GR E + T
Sbjct: 280 YDLKGKEEYNVHVDIPGDFTVYNSLAAISLCRHMGIQKKDVLDALNTIQ-VKGRLEIIKT 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + +DYAH + SLE +L  IR     +I  +FGCGG+R + +R  MG+++  LAD
Sbjct: 339 PGE-YTLMIDYAHNAMSLESLLTTIRKYDPKKIYCLFGCGGNRAKARRYEMGEVSSKLAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + +VT DNPR+E+P  I  +I+ G+      ++   +R EAIR  +E   K D++++AGK
Sbjct: 398 LTVVTSDNPRNEEPMDIINDILVGVHKGPGEYVTIPDRKEAIRYCMEHAGKGDIVILAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           GHE    +  G K    + D+IREI+ 
Sbjct: 458 GHEDYQEIR-GVKHHMDERDLIREIIA 483


>gi|290476458|ref|YP_003469363.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
 gi|289175796|emb|CBJ82599.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
          Length = 495

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/496 (32%), Positives = 240/496 (48%), Gaps = 16/496 (3%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ + +   E  + E++ DSR   AG +FVA+ G++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWGVDTPELPLREMTLDSRKAAAGDLFVAVKGHQTDGRNYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT---GTSGKSS 128
           +  +     + +       P++ +D+    LS  A   Y +HP N L +    GT+GK++
Sbjct: 64  IAEAKGKTDNGTIQAMHGVPVIYLDDLNNKLSKLAGEFY-QHPGNKLKLVGVTGTNGKTT 122

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               + Q  Q  G  S  +G     +      +  TT S + +   L  L +Q  T  ++
Sbjct: 123 TTQLLAQWSQGLGEISAVMGTVGNGLLGMIVPSENTTGSAVDIQLDLQQLVNQKATFAAM 182

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL Q R+  +   A  FTNL RDH+DYH   + Y  AK  LF     K+    I 
Sbjct: 183 EVSSHGLVQGRVAALPFQAAVFTNLSRDHLDYHGDMENYEEAKWLLFSSHDVKQKI--IN 240

Query: 248 ADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ADD   ++ + R            L   + G+++    +        +T +         
Sbjct: 241 ADDDVGQKWLTRLPETVAVTMENRLPKNWSGRWLSTSDIHYHDKGASITFTSSWGQGTLN 300

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G F V N L+A    +++      +LE    L  V GR E      R   + VDYA
Sbjct: 301 SPLMGAFNVSNLLLALATLLSLEYPLQKLLEAASCLEPVCGRMEVFAARDR-PTVVVDYA 359

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L   R    G++  VFGCGGDRD+GKR +MG IA   AD  IVTDDNPRSE
Sbjct: 360 HTPDALEKALSAARLHCKGQLWCVFGCGGDRDKGKRSLMGGIAEQGADRVIVTDDNPRSE 419

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +P  I  +I+ G       +    R+EA+ +AI    ++DV++VAGKGHE   +V N   
Sbjct: 420 EPHSIVEDILTGFIDPGRAMAIHGRVEAVTSAIMQAAEEDVVLVAGKGHEDYQLVGNRRL 479

Query: 481 KMSVDCDIIREILGLI 496
             S D   +  +LG+I
Sbjct: 480 DYS-DRLTVARLLGVI 494


>gi|300919640|ref|ZP_07136131.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300931788|ref|ZP_07147088.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
 gi|300413280|gb|EFJ96590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300460448|gb|EFK23941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
          Length = 471

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|170025738|ref|YP_001722243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|169752272|gb|ACA69790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis YPIII]
          Length = 495

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 169/493 (34%), Positives = 243/493 (49%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II A
Sbjct: 184 VSSHGLIQDRVAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFS--THQSEHKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A    ++     G+ G ++   KV    N   +       + +   
Sbjct: 242 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +  G   A +L     L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILG 494
            S D   +  +LG
Sbjct: 481 YS-DRVTVARLLG 492


>gi|261345649|ref|ZP_05973293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
 gi|282566131|gb|EFB71666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
          Length = 495

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/495 (31%), Positives = 237/495 (47%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L   L+ F +      + E++ DSR   AG +F+A+ G++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    ++    +    P++ + +    LS  A   Y +      ++ VTGT+GK++ 
Sbjct: 64  IAEAQGEAEEGEIRVVHGVPVIYLHDLNNRLSALAGEFYHQPSSKMKLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G     +      +  TT S + +   L+ L ++  T  ++E
Sbjct: 124 TQLIAQWAKGLGETSAVMGTVGNGLLGHVSPSENTTGSAVDIQLELTQLLNKKATLTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A  FTNL RDH+DYH   + Y  AK  LF     +    II A
Sbjct: 184 VSSHGLIQGRVAALNFDAAVFTNLSRDHLDYHGDMENYEAAKWLLFS--THQTKTQIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD    + + R   A        +   +QG ++    V        +  +    +  F  
Sbjct: 242 DDDVGLKWLHRLPQACAVTMENRIPKNWQGSWLKATNVDYHDKGATIHFASSWGEGSFES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N L+A    + +      +L   + L  V GR E   T  +   + VDYAH
Sbjct: 302 PLMGAFNVSNLLLAMATLLMMDYPLDKLLAATDFLMPVCGRMEVFSTEGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  VFGCGGDRD+GKRP+MG  A   AD  ++TDDNPRSE+
Sbjct: 361 TPDALEKALLAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ GI      +    R EA+ + I      DV++VAGKGHE   I+ +    
Sbjct: 421 PLDIINDIMAGILDSSRVLAIPGRPEAVTSTILQAQPDDVILVAGKGHEDYQIIGSRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG++
Sbjct: 481 YS-DRLTVARLLGVV 494


>gi|37527523|ref|NP_930867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|46576914|sp|Q7N142|MURE_PHOLL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|36786958|emb|CAE16032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 495

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/501 (32%), Positives = 246/501 (49%), Gaps = 17/501 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  ++  +L+  L I       R++ E++ DSR   AG +FVAI G++ DG  +IPQAIA
Sbjct: 1   MADRNLRDLLAPLGIDAPV---RELREMTLDSRKSSAGDLFVAIKGHQTDGRHYIPQAIA 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123
           QG  A++  +   + + +  I    P++ V++    LS  A   Y    +   ++ VTGT
Sbjct: 58  QGVAAVIAEAQGEVDNGTVQIMHGVPVVYVNDLNNKLSQLAGEFYCHPGDKLHLIGVTGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++    + Q     G +S  +G     +      +  TT S + +   L  L  Q  
Sbjct: 118 NGKTTTTQLLAQWSHGLGETSAVMGTVGNGLLGRVAPSENTTGSAVDIQLDLQQLVRQEA 177

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T  ++E SSHGL Q R+  +   A  FTNL RDH+DYH   + Y  AK  LF     K+ 
Sbjct: 178 TFAAMEVSSHGLVQGRVAALPFEAAVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHNVKQQ 237

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              I ADD    + + R   A        L   +QG+++  +++        +T      
Sbjct: 238 I--INADDEIGLKWLSRLPQAVAVTMENRLPENWQGRWLAAREIKYHDKGVSITFESSWG 295

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G F V N L+A    +A+      +LE    L  V GR E   T  +   +
Sbjct: 296 GGTIDSSLMGAFNVSNLLLALSTLLALDYPLEKLLETASCLEPVCGRMEVFTTPGK-PVV 354

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L   R    G++  VFGCGGDRD+GKRP+MG +A  LAD  IVTDD
Sbjct: 355 VVDYAHTPDALEKALMAARLHCQGKLWCVFGCGGDRDKGKRPLMGGVAEQLADYVIVTDD 414

Query: 419 NPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+E+P+ I A+I+ G       I    R+EA+  AI      DV+++AGKGHE   +V
Sbjct: 415 NPRNEEPQAIIADILTGFLDPGRAIAIHGRVEAVTNAIMQAKADDVVLIAGKGHEDYQLV 474

Query: 476 TNGEKKMSVDCDIIREILGLI 496
            +     S D   +  +LG+I
Sbjct: 475 GHRRLDYS-DRLTVARLLGVI 494


>gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
 gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
          Length = 492

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 238/504 (47%), Gaps = 25/504 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+                   E   N +S DSR I AG +F+A+ G+  DG  FI
Sbjct: 1   MRLSDLLAPWL----------HYSGPE-SFNNISLDSRAITAGDLFIAVPGHLVDGRKFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFAS--RLYGKHPENI 117
             A  QGA A +V S    +     +  + +P ++     + LS   +     G H   +
Sbjct: 50  GVAFEQGAVAALVHSDDPAEHGRLKLEQTGSPQVLFFQLSQHLSAIGAQAYPLGAHRLKL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S+   + Q+    G  +  +G     +     D+  TT  PI ++  L  
Sbjct: 110 IGVTGTNGKTSITQLMAQLVALLGKQASLMGTLGNGLWGDLVDSGNTTADPITISAQLQA 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +  G    ++E SSHGL Q R++ +      FTNL RDH+DYH T QAY +AK RLF+ 
Sbjct: 170 FNLAGADLCAMEVSSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKF 229

Query: 237 LLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +    +I  DD   ++ +     A + G  + S       I+             T+
Sbjct: 230 TSLQSG--LINLDDEVGRQWLSEEQSAKHIGFSICSAYADAASIYTLDNHQHDQGVTATL 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                      PL G F + N + A G    IG D   +   + +L  V GR E   T  
Sbjct: 288 VWPEGQAKLASPLLGYFNLSNLVAALGALYLIGYDMRAMAASVPQLKSVAGRMERFTT-D 346

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  + VDYAHT +++E  LK +R    G++  +FGCGGDRD+GKRP+M + A   AD  
Sbjct: 347 NGVTLVVDYAHTPDAIEQALKALRGHCEGQLWCLFGCGGDRDKGKRPLMAQAAEAYADKV 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSE PE I  EI+ G+      + + +R +AIR  + +    D++++AGKGHE
Sbjct: 407 MVTSDNARSESPEVIIEEILAGLDAPERVLTQVSREKAIRQVVALAKPGDLILLAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T   +  GE+    +  + + + G
Sbjct: 467 TYQEIA-GERLDYDERALAKSLAG 489


>gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 485

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 181/490 (36%), Positives = 264/490 (53%), Gaps = 14/490 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K    L +   + P + ++  +   + DSR +  G++F A  G K +G  FI +AI  
Sbjct: 4   TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAI-- 60

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
                  + A ++             LV +N R   +  A+R Y   P  + AVTGT+GK
Sbjct: 61  ------AAGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SVA   +Q+   +G  +  IG    I++       +TTP  +      S L+   ++HV
Sbjct: 115 TSVAELCRQLWTITGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EASSHGLDQ+R DG K+IAG+FT+  RDH+DYH T + Y  AK+RLF+E +  +  A+
Sbjct: 175 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I+ADD  +  V+      G +++ + ++ + I L    A    Q +T+S++G+ +    P
Sbjct: 235 IWADDPAATTVIAHVQKRGLKLIDI-WKAEAIRLVNREADSQGQMITLSIKGESYKIRLP 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G +Q+ N LV AGL +A G D    +  L  L  V GR E    +  G  +YVDYAHT
Sbjct: 294 LIGGYQLSNGLVRAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L   ++ +R  T G + VVFG GGDRD+GKRP MGKIA +LAD  IVTDDNPR ED 
Sbjct: 354 PDGLRAAIEALRPHTEGLLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 413

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK---KM 482
             IR E++ G P   E G R EAI +AI+   K D++++AGKGHE   I+  GE      
Sbjct: 414 ATIRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 473

Query: 483 SVDCDIIREI 492
             D  + +E 
Sbjct: 474 FDDVTVAKEA 483


>gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
 gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
          Length = 495

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/493 (33%), Positives = 256/493 (51%), Gaps = 10/493 (2%)

Query: 9   KDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ELI   L +         I+ +  DSR I++G  FVAI G+  DG  FI +AIAQG
Sbjct: 5   KALSELIAPWLELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++  +     +     R   P++ +    + LS  A RLYG H   ++ VTGT+GK+
Sbjct: 65  ANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++   + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + +
Sbjct: 125 TITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTA 184

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL Q R+  +  +AG F+NL RDH+DYH T  AY  AK  LF E   +   AII
Sbjct: 185 LETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AII 242

Query: 247 YADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DDA   +  K+  H  G  +L+     + I  ++V    +   +       + +   P
Sbjct: 243 NVDDAVGAQWGKQLPHAIGVSLLAQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAP 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF   N L+A    +++G + + +L    +L  V GR E      +  ++ VDYAHT
Sbjct: 303 LIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREHK-AKMVVDYAHT 361

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ +R   +G++  +FGCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P
Sbjct: 362 PDALEKALRALRVHCAGQLWAIFGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESP 421

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I A+++ G+        + NR +A   A++    QD++++AGKGHE   ++ N     
Sbjct: 422 QAIVADMLVGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKGHEDYQVLANETIHY 481

Query: 483 SVDCDIIREILGL 495
           S D +  +++L L
Sbjct: 482 S-DRETAQQLLEL 493


>gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 484

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/505 (29%), Positives = 244/505 (48%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +KL+D+++     E++ QL        + ++  +  DSR    G +FVA+ G   DGHLF
Sbjct: 2   IKLKDILHAIPVQEVVGQL--------DVEVTSLCFDSRKANEGSLFVAVRGVHTDGHLF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           + +AI QG   I+V       +       +   ++V +T   L + A   YG       +
Sbjct: 54  VEKAIEQGCTLIMVE------EMPEKKHEDVTYMMVADTAYALGIAAGNFYGNPSRELKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  +    G     +      I         TTP P+ L   L  
Sbjct: 108 VGVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRD 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +G  +  +E SSH + Q R+ G++   G F+N+  DH+D+H+T   Y  AK + F++
Sbjct: 168 MVDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDD 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L  + + A+   D+     ++    N      + G +G      K+   H    + +++E
Sbjct: 228 L-DRFAFALTNGDEKNGSVML---QNTFAHKKTYGLKGVADFKAKIIESHFDGML-LNIE 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G +      L GEF  YN L   G  I +  ++  VL  L ++    GRFE + T+  G 
Sbjct: 283 GHEVWVK--LVGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAI-TSKNGV 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT +++  +L  I  +     +II V GCGGDRD+ KRP M ++A  ++D  I
Sbjct: 340 IGIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMSDKVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR+EDP +I  ++  GIP           +R EAIR A  +    D+++VAGKGH
Sbjct: 400 ITSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    + NG K    D + + +   
Sbjct: 460 EKYQDI-NGVKHHFDDREELEKTFN 483


>gi|300821910|ref|ZP_07102054.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|300525510|gb|EFK46579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|324017754|gb|EGB86973.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 117-3]
          Length = 471

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|237729383|ref|ZP_04559864.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
 gi|226909112|gb|EEH95030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
          Length = 495

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/495 (33%), Positives = 251/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +G +FVA++G++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVPGAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  IAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L++QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLAAQGATVGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++    V    +   +  +    D +   
Sbjct: 242 DDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVDVKYHDSGATIRFTSSWGDGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLADLLKTATQLQPVCGRMEVFSAPGK-TTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI    + DV++VAGKGHE   IV +    
Sbjct: 421 PRAIINDILAGMLDAGQAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHEDYQIVGSQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
          Length = 487

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/495 (32%), Positives = 250/495 (50%), Gaps = 29/495 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+  L+I  +    E +++ ++ DSR  + G +FV + G   DGH +I  AI  G +
Sbjct: 3   LKELVKDLNIKEINGSLEVEVDSIAYDSRKTKQGSLFVCVEGTVVDGHKYINDAIENGTK 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A +V     + +   TI +       D+TR  L+  +   +G     +  + +TGT GK+
Sbjct: 63  AFLVQKHVDVPEGITTIET-------DDTRFGLAAVSDAFFGHPSSKLNLIGITGTKGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    V+ I + +G +   IG  +  I +       TTP    L    + +    V    
Sbjct: 116 TTTYMVKAILEAAGHNMGLIGTVANLIGNQVLYTSRTTPESYDLQSLFNDMIDNKVDSAV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS GL+ HR+       G FTN  RDHI    H T + YFNAK +LF+      + A
Sbjct: 176 MEVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFK----MCNKA 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +I  D  + +++ + A     +VL+ G   +  I    V          ++      D  
Sbjct: 232 VINIDSEHGRKMAELAEG---KVLTYGLSSRSDIWASDVIKKTGHTFFKLNSPWGSIDIE 288

Query: 304 FPLPGEFQVYNALVAAG-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             L GEF +YNAL A G  C+  GI    V + L K+  VPGR E V T+     + +DY
Sbjct: 289 TDLQGEFNIYNALAAIGSCCLIPGITLEHVKKGLTKVT-VPGRMESVKTDGN-YSVLIDY 346

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT +SLE +LK ++    GR++ +FGCGGDRD+GKRP MG+I+ ++AD  I+T DNPR+
Sbjct: 347 AHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIITSDNPRT 406

Query: 423 EDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           E+PE+I  +I  GI      +I+  +R +AI+ A+E     D++++AGKGHET       
Sbjct: 407 ENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAQDGDIIILAGKGHETYQQFAEK 466

Query: 479 EKKMSVDCDIIREIL 493
                 + +++ E+L
Sbjct: 467 TIH-FDEREVVNELL 480


>gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
 gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
          Length = 512

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 254/491 (51%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA 
Sbjct: 24  ISELIAPWLELTDPKLATLVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGAN 83

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H    + VTGT+GK+++
Sbjct: 84  VVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTI 143

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 144 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 204 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 261

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 262 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 321

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 322 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 380

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 381 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 440

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 441 IVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 499

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 500 DRETAQQLLEL 510


>gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
 gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
          Length = 486

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/502 (31%), Positives = 248/502 (49%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+ L+       +  L  F  +  + +I+ +S D+R I+ G +FVA+ G K DGH F+
Sbjct: 1   MRLKVLLSG-----VALLGGFADE--DVEISGISYDTRTIRPGELFVALTGYKTDGHRFL 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+ +GA A++   A              P L+  +TR  L+  ++  +G+  + +  +
Sbjct: 54  REAVKKGAAAVICHKAPEEPG---------PWLIAADTRAALAAVSANWFGRPADELTVI 104

Query: 119 AVTGTSGKSSVASFVQQICQ-RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
            VTGT+GK++    ++ + +   G     +G     I         TTP    + K L  
Sbjct: 105 GVTGTNGKTTTTYLLKAMLEGVLGAKVGLMGTNQNMIGEKVIPAHRTTPESWEVQKLLRD 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  G THV +E SSH L  HR+DGI    G FTNL RDH+D+H T + Y   K  LF +
Sbjct: 165 MADSGCTHVVMEVSSHALALHRVDGIAFQVGIFTNLTRDHLDFHGTMEEYRRVKGLLFRQ 224

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  A++  DD   +              S       +  K +    ++ +      
Sbjct: 225 ----TGTAVLNLDDEAGRYYASIV-TCPALTYSENKDQADVTAKNIRLFPDRVEFEALTT 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G       P+PG F +YNAL      +A+ +    V   L +   V GR E V T +   
Sbjct: 280 GAIARVRLPIPGGFTIYNALGVIACGLALKLPLPQVCASLAEAKGVKGRIEVVPTPTD-Y 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT ++LE IL  +R  T GR+I +FGCGGDRD+ KRP+MG IA +LAD+ ++T
Sbjct: 339 AVIIDYAHTPDALENILTTVRDFTPGRVICLFGCGGDRDRSKRPVMGAIAAELADLVVLT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDPE I A+I  G+ G     +   +R EAIR A++     D +V+AGKGHET 
Sbjct: 399 SDNPRTEDPEAILADIQAGMEGSDTPCMVVPHRREAIRRALDEAKSGDTVVLAGKGHETY 458

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +    + +  + + +    G
Sbjct: 459 QEIGTRRRHL-DEREEVAAYFG 479


>gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
 gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
          Length = 512

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 254/491 (51%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA 
Sbjct: 24  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGAN 83

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 84  LVLAEADAQHINGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 143

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 144 TQLIAQWLELLGHEAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 204 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHTCQN--AIINV 261

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 262 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 321

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G +   +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 322 GEFNACNLLLALATLLSLGFEKNALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 380

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 381 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 440

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 441 IVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 499

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 500 DRETAQQLLEL 510


>gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella woodyi ATCC 51908]
 gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC
           51908]
          Length = 502

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 240/504 (47%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F               E  +N++S DSR +  G +FVA+ G++ DG  +I
Sbjct: 1   MLLKDLLAPWF----------HYSGSE-SVNKLSLDSREVDQGDLFVAVPGHQVDGRDYI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A   GA+  +V +          + SN+  +      + LS  A++ Y    E   ++
Sbjct: 50  DVAAKNGAQVSLVHTDNPEMHGKV-LTSNSTQIFFFQLSRQLSALAAQAYPLPVERLKLV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+   + Q+    G     +G     +     D+  TT  PI +   L+  
Sbjct: 109 GVTGTNGKTSITQLMAQLLVCLGKQPAVMGTLGNGLWGGLVDSGNTTADPITIMAQLNAF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G    ++E SSHGL Q R+D +      FTNL RDH+DYH T QAY  AK RLF+  
Sbjct: 169 NELGADLCAMEVSSHGLIQARVDAVPFDLAIFTNLSRDHLDYHGTMQAYGEAKFRLFK-- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQV 291
            P     +I  DD   K+ + ++ +A     S+        Q   I+ K     +   + 
Sbjct: 227 FPSLKSGVINLDDDLGKQWLAQSDSAKLIGYSIAGDSDTVSQDAAIYTKGNHFHNQGVRA 286

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +       +   PL G F + N L A      +G D   +L  + KL+ V GR E   T
Sbjct: 287 KLVWPEGCGNIDSPLLGAFNLSNLLAALAGLYQLGFDMNALLNAVPKLNAVAGRMEQFTT 346

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G  + VDYAHT +++E  LK +R    G +  +FGCGGDRD+GKRP+M + A   AD
Sbjct: 347 E-NGITLVVDYAHTPDAIEQALKALRGHCEGELWCLFGCGGDRDKGKRPLMAQSAEAYAD 405

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +VT DN RSE P++I  +++ G+      + + +R  AIR  +      D++++AGKG
Sbjct: 406 RIMVTSDNARSESPDEIINDVLAGLNRPERAVTQVDRELAIREVLAAAKPGDLILLAGKG 465

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           HET      G ++   +  + R +
Sbjct: 466 HETYQE-AGGVRRDYDERALARSL 488


>gi|317046892|ref|YP_004114540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
 gi|316948509|gb|ADU67984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
          Length = 495

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/495 (32%), Positives = 245/495 (49%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R + +++ DSR   AG +F+A+ G+  DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWVPGAPARPLRDMTLDSRSAAAGDLFIAVAGHHADGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  IAEAEGEAIDGDIREIHGVPVIYLAQLPQRLSALAGRFYQQPAEKLKLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q     G +   +G     +         TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLIAQWANLLGETGAVMGTVGNGLYGQLVATENTTGSAVDVQHVLHDLVGQGATLAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A  FTNL RDH+DYH   Q+Y  AK  LF E   +   AII A
Sbjct: 184 VSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQSYEAAKWLLFSE--HQVGAAIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A    ++     G  G+++    V        +  S    D +F  
Sbjct: 242 DDEVGRRWLAKLPDAVAVTMADNLQPGCHGRWLKATAVNYHDGGAHICFSSSWGDGEFDS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +++      ++    +L  V GR E V +      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLSLDYPLDALVSSATQLLPVTGRME-VFSAPDKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSED
Sbjct: 361 TPDALEKALEAARLHCKGQLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSED 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ G+           R +A+  AI     +D+++VAGKGHE   IV N    
Sbjct: 421 PQAIVNDILTGLLDPGRARVVAGRAQAVTNAIMQAKAEDIVLVAGKGHEDYQIVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D D +  +LG++
Sbjct: 481 YS-DRDTVARLLGVM 494


>gi|310765087|gb|ADP10037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia sp. Ejp617]
          Length = 495

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/495 (32%), Positives = 243/495 (49%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +  +FVAI G+  DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D         P++ +    + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  IAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +   +G     +         TT S + +   L+ L  +G +  ++E
Sbjct: 124 TQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A +FTNL RDH+DYH     Y  AK  LF E   +   AII A
Sbjct: 184 ISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +++  +A        L  G  G+++   KV       +V  S    + D   
Sbjct: 242 DDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDIDS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++      +     +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSED
Sbjct: 361 TPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSED 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R +A+   +    + D+++VAGKGHE   I+ +    
Sbjct: 421 PAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFD 480

Query: 482 MSVDCDIIREILGLI 496
            S D D +  +LG++
Sbjct: 481 YS-DRDTVARLLGVL 494


>gi|300981122|ref|ZP_07175368.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|301048477|ref|ZP_07195502.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300299663|gb|EFJ56048.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300409024|gb|EFJ92562.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|315294720|gb|EFU54063.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 153-1]
          Length = 471

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 243/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G  S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEPSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSA--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
 gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
          Length = 499

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 259/501 (51%), Gaps = 10/501 (1%)

Query: 1   MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+     +    ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  F
Sbjct: 1   MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +AIAQGA  ++  +     +     R+  P++ +    + LS  A RLYG H   ++ 
Sbjct: 61  IDKAIAQGANLVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++   + Q  +  G  +  +G T     +  +    TT + + +   L  L+
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G  + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E  
Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +   AII  DDA   + +K+   A    +++     + I  ++V    +   +      
Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSW 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +  +
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AK 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TD
Sbjct: 358 MVVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   +
Sbjct: 418 DNPRSESPQAIVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + N     S D +  +++L L
Sbjct: 478 LANETIHYS-DRETAQQLLEL 497


>gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
 gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
          Length = 499

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/508 (29%), Positives = 248/508 (48%), Gaps = 28/508 (5%)

Query: 1   MKLQDL----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L+ L    +      L++Q     +     ++  +  DSR    G IFVA+ G   DG
Sbjct: 1   MNLKPLNNYIVALTEEHLLSQAHTGAVSTELCQVTSIEQDSRRASEGCIFVALRGVHVDG 60

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             +IP+A+A G   IV            ++      L V +T K +++ AS  Y +    
Sbjct: 61  ADYIPKALAAGCRIIVTEHPR-----PESLSDEVAWLTVTDTAKAIAVLASVYYDRPERQ 115

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + VTGT+GK++ A+   Q+    G+ +         I         TTP  + L + 
Sbjct: 116 LTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVCIRIGDEEYPATHTTPDALELHRV 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +   G  ++ +E SSH L Q R+ G+      FTNL RDH+DYH T QAY  AK  L
Sbjct: 176 MRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLL 235

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+ L P ++ A++ ADD     ++    N    + +   +    ++ ++   +     T+
Sbjct: 236 FDNLSP-DAYALVNADDRNGSVMV---QNCAAHLHTYAMRSHADYMSQLLGQYVDGS-TL 290

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ ++ +    L G +  YN     G+   +   +D +L+L  +  L  V GRF+ +  
Sbjct: 291 LLDNEEVEIK--LVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLL-A 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + RG  + VDYAHT ++LE +LK +  + + ++ VV G GGDRD GKRP MG+IA ++ +
Sbjct: 348 SPRGYHVVVDYAHTPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCN 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-----KGNRIEAIRTAIEMLNKQDVLVVAG 466
              +T DNPRSEDP+ I  +++ GIP           +R +AI  A     + D++V+AG
Sbjct: 408 CLYLTSDNPRSEDPQTIIDQMLEGIPQVERDQVYTNVSRRQAITDACAAAQRGDLVVIAG 467

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHET   +  G K    D ++ +EI  
Sbjct: 468 KGHETYQEIK-GIKHHFDDKEVAQEIFA 494


>gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
 gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
          Length = 505

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/498 (31%), Positives = 261/498 (52%), Gaps = 33/498 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             ++ +I  +  DSR I+  ++FVA+ G+  DGH FI  A+  GA+ I+      ++ ++
Sbjct: 15  DGKKFEIRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMIICEKEVDVKQYT 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSG 141
            T  +    ++V++ RK L + AS  Y        I+ +TGT+GK++ +  ++ I +   
Sbjct: 75  NT--TEITFVLVEDIRKKLGIIASNYYDYPQNKIKIVGITGTNGKTTSSFILENILE--- 129

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             + +IG T   I         TTP  + L K +     +G  +  +E SSH L+  R+D
Sbjct: 130 -KTARIGTTGNRILDEEFQTVNTTPESLELIKLIDKSVKKGADYFIMEVSSHALEIGRVD 188

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMK 258
            ++  +  FTNL +DH+D+H+T + YFNAK ++F  L         +I  DD Y  ++  
Sbjct: 189 MLQFDSAIFTNLTQDHLDFHKTMENYFNAKKKMFSMLRNNNSQGVGVINIDDEYGAKIYS 248

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------------KDFDFLFP 305
              +     +SV  +   I    +   +N  ++ I++E               ++ F   
Sbjct: 249 EKKDNNYISISVRNENADIWGDILNYTNNGMKIKINLENYLEKNKHNLKNSDGEYKFEIN 308

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GE+ +YN L      +++GI+ ++++E L+++ VVPGRFE +  N    RI VD+AHT
Sbjct: 309 LIGEYNLYNVLGCVASALSLGIEMSVIVEKLKEMPVVPGRFETIK-NELEARIVVDFAHT 367

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L  I K ++ IT  R+I +FG GGDRD  KRP M K A   +D  I+T DNPR+E+P
Sbjct: 368 DDGLLNIGKTLKQITDKRVITIFGAGGDRDHEKRPKMAKAAAKFSDYIILTSDNPRTENP 427

Query: 426 EKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             I A+I  G+         ++   +R  AI+  I+ML K D L++AGKGHET  I+   
Sbjct: 428 VNILADIEKGLIDEKYPFDKYLIISDRERAIKYGIKMLEKDDSLLIAGKGHETYQIIGT- 486

Query: 479 EKKMSVDCDIIREILGLI 496
           EK    D +I+R+IL  +
Sbjct: 487 EKTHFDDREIVRKILEEM 504


>gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
 gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
          Length = 499

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 259/501 (51%), Gaps = 10/501 (1%)

Query: 1   MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+     +    ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  F
Sbjct: 1   MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +AIAQGA  ++  +     +     R+  P++ +    + LS  A RLYG H   ++ 
Sbjct: 61  IDKAIAQGANVVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++   + Q  +  G  +  +G T     +  +    TT + + +   L  L+
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G  + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E  
Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +   AII  DDA   + +K+   A    +++     + I  ++V    +   +      
Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSW 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +  +
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AK 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TD
Sbjct: 358 MVVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   +
Sbjct: 418 DNPRSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + N     S D +  +++L L
Sbjct: 478 LANETIHYS-DRETAQQLLEL 497


>gi|157147491|ref|YP_001454810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084696|gb|ABV14374.1| hypothetical protein CKO_03290 [Citrobacter koseri ATCC BAA-895]
          Length = 495

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVPGAPERALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  IAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEHMRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L  QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLVEQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWTLYS--THHYGEAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + R  +A        ++    G+++   +V    +   +       + +   
Sbjct: 242 DDEVGRRWLVRLPDAVAVSMEDHINPNCHGRWLKAVEVKYHDSGATIRFDSSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLADLLKTAPRLQPVCGRMEVFSAPGK-TTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+ +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCTGQLWCVFGCGGDRDKGKRPLMGAIAEEFADVVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R EA+  AI    + DV++VAGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGHAKVMEGRAEAVTCAIMQAKENDVVLVAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|300938480|ref|ZP_07153220.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
 gi|300456549|gb|EFK20042.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
          Length = 471

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 244/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSA--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKASDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATQLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|315300014|gb|EFU59252.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 16-3]
 gi|323190233|gb|EFZ75509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli RN587/1]
 gi|324012248|gb|EGB81467.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 60-1]
          Length = 471

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 244/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSA--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
 gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
          Length = 495

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 256/491 (52%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA 
Sbjct: 7   ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGAN 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 67  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 126

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 127 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 186

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 187 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 244

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 245 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 304

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 305 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 363

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 364 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 423

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 424 IVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 482

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 483 DRETAQQLLEL 493


>gi|300900884|ref|ZP_07119021.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
 gi|300355648|gb|EFJ71518.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
          Length = 471

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLSDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   + +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLSDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|156935395|ref|YP_001439311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533649|gb|ABU78475.1| hypothetical protein ESA_03253 [Cronobacter sakazakii ATCC BAA-894]
          Length = 471

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/474 (36%), Positives = 244/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREIHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  E +  + VTGT+GK++    + Q CQR G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYDEPSERLRLIGVTGTNGKTTTTQLIAQWCQRLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   LS L++QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVMPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKFAATVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH   + Y  AK  LF         A+I ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLFSA--HHYGQAVINADDEVGRRWLAKLPDAVAVSME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++ G  G+++    V        +  S    D +    L G F V N L+A G  +A+
Sbjct: 239 NNINPGCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALGTLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +LE   +L  V GR E      +   + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLAALLESAPRLQPVNGRMEVFSAPGK-PTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+EDP+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEDPKAIIADILTGMLDAGRARVV 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI    + DV+++AGKGHE   IV       S D      +LG +
Sbjct: 418 EGRAEAVTNAIMQAAENDVVLLAGKGHEDYQIVGTRRLDYS-DRVTAARLLGAV 470


>gi|153949506|ref|YP_001402349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186894039|ref|YP_001871151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|152961001|gb|ABS48462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186697065|gb|ACC87694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 495

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 169/493 (34%), Positives = 243/493 (49%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II A
Sbjct: 184 VSSHGLIQDRVAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFS--THQSEHKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A    ++     G+ G ++   KV    N   +       + +   
Sbjct: 242 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +  G   A +L     L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILG 494
            S D   +  +LG
Sbjct: 481 YS-DRVTVARLLG 492


>gi|301026107|ref|ZP_07189582.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
 gi|300395678|gb|EFJ79216.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
          Length = 471

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSA--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|300984507|ref|ZP_07176999.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
 gi|300306676|gb|EFJ61196.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
          Length = 471

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 244/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSSVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSA--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
 gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
          Length = 499

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 258/501 (51%), Gaps = 10/501 (1%)

Query: 1   MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+     +    ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  F
Sbjct: 1   MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +AIAQGA  ++  +     +     R+  P++ +    + LS  A RLYG H   ++ 
Sbjct: 61  IDKAIAQGANVVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++   + Q  +  G  +  +G T     +  +    TT + + +   L  L+
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E  
Sbjct: 181 EHGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +   AII  DDA   + +K+   A    +++     + I  ++V    +   +      
Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVAKPNTAQAIWAREVAYAESGITLNFESSW 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +  +
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AK 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VDYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TD
Sbjct: 358 IVVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   +
Sbjct: 418 DNPRSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + N     S D +  +++L L
Sbjct: 478 LANETIHYS-DRETAQQLLEL 497


>gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132]
 gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans ND132]
          Length = 507

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 147/481 (30%), Positives = 229/481 (47%), Gaps = 25/481 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR IQ G  FVA+ G    G  +IP A+  GA  IV     +    +  +      
Sbjct: 33  VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVA-PEAARDLVAPVVEKKAVA 91

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + VDN    L   A   +        ++A+TGT+GK++ +  ++ +   SGL    +G  
Sbjct: 92  VYVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGLKVGVLGTV 151

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +     F  D  LTTP    + + L  +    V    +E SSH LDQ+R+ G+   A  F
Sbjct: 152 NYRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVF 211

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH   + YF AK +LF E       A++  DD Y + ++          + 
Sbjct: 212 TNLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQGG----IG 267

Query: 270 VGYQGKFIHLKKV-----------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            G     +  ++V                  ++  S +GK +    PL G F   N L A
Sbjct: 268 YGIGDASLVRQEVGDKPLVQGRILSMTGQGMEIETSWKGKTWVVRSPLVGSFNALNLLAA 327

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + + +G++    +  L     VPGR E V  N +   I+VDYAHT ++L+ + + +  
Sbjct: 328 QAVGLQLGLNCK-DMRRLSTFPGVPGRLERV-MNDKNLDIFVDYAHTPDALDNVQRTLAA 385

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHG 435
           +   R+I VFGCGGDRD+ KRP+M   A   AD+A++T DNPR+EDP  I  +    + G
Sbjct: 386 LDFKRLITVFGCGGDRDRTKRPLMAASAARYADVAVLTSDNPRTEDPAAIMDDARPGLAG 445

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
               +E  +R EAI+ A+  +   D L++AGKGHE   I+    K+   D +   + +  
Sbjct: 446 AKRVMENPDRTEAIKMAVAEMEPGDALLIAGKGHEDYQIIGT-TKRHFSDKEAALKAIEE 504

Query: 496 I 496
           +
Sbjct: 505 V 505


>gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Vibrio cholerae LMA3894-4]
          Length = 495

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 256/491 (52%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA 
Sbjct: 7   ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGAN 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 67  VVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 126

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 127 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 186

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 187 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 244

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 245 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 304

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 305 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 363

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 364 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 423

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 424 IVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 482

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 483 DRETAQQLLEL 493


>gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Bradyrhizobium sp. ORS278]
          Length = 486

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/501 (41%), Positives = 278/501 (55%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+        +Q  + P      +++ +++DSR ++ G +F A+ G K DG  F 
Sbjct: 1   MKLHDLLG-------DQAGLDPRVAA-VEVSGLAADSRAVRPGDLFFALSGTKTDGTRF- 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENIL 118
                    A  V++             + P+  V   N R+ L+L ASR++ + P  I 
Sbjct: 52  --------IAAAVAAGAIAVAGHEAPAGDLPVPFVSLPNPRRALALAASRVFPRQPATIA 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
           AVTGTSGK+SVA+F +QI Q  G ++  IG    IS         TTP PI L + +  +
Sbjct: 104 AVTGTSGKTSVAAFTRQIWQSLGHNAASIGTVGLISDKRTVYGSLTTPDPIALHRQIDEI 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +L
Sbjct: 164 TQDGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFRDL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTI 293
           +P   PA+I AD   S EV+  A   G R+++VG  G      I L         QQ+ +
Sbjct: 224 VPPGGPAVISADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQLEL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G+      PL G FQ+ NALVAAGL I  G D   V E LEKL    GR E VG   
Sbjct: 284 QHCGRITFLRLPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKGRLELVG-EH 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  I++DYAH  ++L   L  +R     +++VVFG GGDRD GKRP+MG+IA   AD  
Sbjct: 343 NGAPIFIDYAHKPDALAKALHALRPYAQRKLVVVFGAGGDRDSGKRPLMGEIAAAGADRV 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           IVTDDNPRSE+P  IRA I+   PG  E G+R EAIR AI  L   D LV+AGKGHET  
Sbjct: 403 IVTDDNPRSENPAAIRAAILAAAPGAREIGDRAEAIRVAISELQPGDALVIAGKGHETGQ 462

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+ +       D + + + L 
Sbjct: 463 IIGD-TVLHFSDHEAVADALA 482


>gi|22127505|ref|NP_670928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis KIM 10]
 gi|45443366|ref|NP_994905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809542|ref|YP_653458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|108810581|ref|YP_646348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|145600347|ref|YP_001164423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162419817|ref|YP_001607300.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165928210|ref|ZP_02224042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937753|ref|ZP_02226314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008992|ref|ZP_02229890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212163|ref|ZP_02238198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401238|ref|ZP_02306738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421898|ref|ZP_02313651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426477|ref|ZP_02318230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229837059|ref|ZP_04457224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|229840438|ref|ZP_04460597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843020|ref|ZP_04463170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229900773|ref|ZP_04515897.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|270487857|ref|ZP_06204931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294502638|ref|YP_003566700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|21960603|gb|AAM87179.1|AE013965_6 meso-diaminopimelate-adding enzyme [Yersinia pestis KIM 10]
 gi|45438235|gb|AAS63782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108774229|gb|ABG16748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|108781455|gb|ABG15513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|145212043|gb|ABP41450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162352632|gb|ABX86580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165914165|gb|EDR32781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919821|gb|EDR37122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992331|gb|EDR44632.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206909|gb|EDR51389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960035|gb|EDR56056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049263|gb|EDR60671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054575|gb|EDR64383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682112|gb|EEO78204.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|229689896|gb|EEO81955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696804|gb|EEO86851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706002|gb|EEO92011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|262360668|gb|ACY57389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D106004]
 gi|270336361|gb|EFA47138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294353097|gb|ADE63438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|320016916|gb|ADW00488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 495

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 169/493 (34%), Positives = 243/493 (49%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II A
Sbjct: 184 VSSHGLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFS--THQSEHKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A    ++     G+ G ++   KV    N   +       + +   
Sbjct: 242 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +  G   A +L     L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILG 494
            S D   +  +LG
Sbjct: 481 YS-DRVTVARLLG 492


>gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
 gi|166027078|gb|EDR45835.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
          Length = 488

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/505 (30%), Positives = 233/505 (46%), Gaps = 35/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+ +        L    +   +  +I E+ +DSR +  G +FV I G   DGH +
Sbjct: 1   MKLTKLLER--------LDYKVVAGSDNIEITELVNDSRKVVPGSVFVCISGAVSDGHQY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +     +GA A++V            +     ++ V+NTR  L+L ++  +G   E +  
Sbjct: 53  VKDVAERGAAAVIVEKDVE-------VPEGLTVIKVENTRYALALMSAAYFGYPAEKLKT 105

Query: 120 VTGTSGKSSVA--SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           +  T  K        V+ I +  G     IG   + I      +  TTP    + K  + 
Sbjct: 106 IGITGTKGKTTTTYMVKAILEEVGHKVGLIGTIEAIIGDKTIPSNNTTPESYTIQKYFAQ 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +   G   V +E SS GL  HR  GI    G FTNLG DHI    H+  + Y   K  LF
Sbjct: 166 MVEAGCDCVVMEVSSQGLMLHRTAGIMFDIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTI 293
           ++            DD + ++V K A          G +     +            V  
Sbjct: 226 KQCKVGIG----NVDDKWFEDVFKDA-TCEIETFGFGEKADLRAIDVKHISRPGYLGVWY 280

Query: 294 SVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V G  DFD    +PGEF VYN+L A  +C    +    + + L K+  V GR E V   
Sbjct: 281 HVTGLMDFDVEIDIPGEFSVYNSLTAIAVCRHFNVPVEKIKDAL-KVAKVKGRIEMVKV- 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           S    + +DYAH + +LE +L  +R    GRI+ VFGCGG+R + +R  MG+++  L+D 
Sbjct: 339 SDDFTLMIDYAHNAMALESLLHTLRDYNPGRIVTVFGCGGNRSKTRRYEMGEVSGKLSDF 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I+T DNPR E+P+ I  +II G+      +I+  +R EAIR AIE     DV+V+AGKG
Sbjct: 399 TIITSDNPRFEEPQAIIDDIIVGMKKTDGKYIDICDRKEAIRYAIEHGRPGDVIVLAGKG 458

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET   +  G K    +  +I+E+L
Sbjct: 459 HETYQEIK-GVKYDMDERVLIKEVL 482


>gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
          Length = 477

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/477 (31%), Positives = 243/477 (50%), Gaps = 25/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I+++  DSR I+   +FVAI G   +GH +I +A++ GA AI+        +  + I
Sbjct: 11  DIAISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGAIAIICE------ELPSNI 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +    + V +T + L+  ++  +    H   ++ VTGT+GK+++AS + Q+ +++G   
Sbjct: 65  VNGVTYIKVKDTNEALAFLSANYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKAGYKV 124

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +      + +       TTP  + L   L  +   G     +E SSHG+ Q R + ++
Sbjct: 125 GLLSTVKIMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKRTEALQ 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            + G FTNL  DH+DYH T   Y + K   F+ L  K++ AI   DD     ++    N 
Sbjct: 185 FVGGVFTNLSHDHLDYHNTFAEYRDVKKSFFDGL-SKDAFAITNIDDKNGAIML---QNT 240

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             + LS   +  +   K     +    + + +   +      L G F  YN L   G+ +
Sbjct: 241 KAKKLSYALKS-YADYKAQILENQLSGLLLKINDNEVWVK--LIGSFNAYNLLAIYGVAV 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382
            +GID    L  L +L  V GRF+F+  +       VDYAHT ++LE +LK I  I +  
Sbjct: 298 ELGIDKMEALRLLSELESVSGRFQFI-VSDLKITAIVDYAHTPDALENVLKTIEDIRTKN 356

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
            ++I V GCGGDRD+ KRPIM  IA  L+D AI T DNPR+E+PE I  E+  G+     
Sbjct: 357 EQLITVVGCGGDRDKTKRPIMANIASSLSDKAIFTSDNPRTENPETIIEEMEKGVEPQNF 416

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +   +R +AI+TA ++ N  D++++AGKGHET   + NG +    D  II E+L
Sbjct: 417 KKTVSILDRKQAIKTACQLANPNDIILIAGKGHETYQEI-NGLRHDFDDLKIITELL 472


>gi|51595033|ref|YP_069224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|51588315|emb|CAH19923.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
          Length = 490

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/482 (34%), Positives = 239/482 (49%), Gaps = 14/482 (2%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D 
Sbjct: 10  LDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDV 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
           S       P++ + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  
Sbjct: 70  SVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQAL 129

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G +S  +G     +         TT S + +   L  L  QG T  ++E SSHGL Q R+
Sbjct: 130 GETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +
Sbjct: 190 AALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFS--THQSEHKIINADDDVGRRWLSQ 247

Query: 260 AHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              A    ++     G+ G ++   KV    N   +       + +    L G F V N 
Sbjct: 248 LPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNL 307

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA    +  G   A +L     L  V GR E      +   + VDYAHT ++LE  L  
Sbjct: 308 LVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G
Sbjct: 367 ARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILSG 426

Query: 436 IPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +           R EA+ +AI    + DV+++AGKGHE   +V N     S D   +  +
Sbjct: 427 LLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYS-DRVTVARL 485

Query: 493 LG 494
           LG
Sbjct: 486 LG 487


>gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 496

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/501 (32%), Positives = 244/501 (48%), Gaps = 27/501 (5%)

Query: 9   KDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL   L     +   + +I  +  DSR  + G +F  IVG   D H FIP     G
Sbjct: 3   KRLEELAALLPGARIVGDAQTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++   A      S  + +   +L V N  K L       Y        ++ +TGT+G
Sbjct: 63  ARAVLTERA------SVDVPAGVAVLYVLNLEKALDTIVPFFYDYPARVMRVVGITGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  V+ I + +G     IG   + I         TTP  I L + L+ + ++G+  
Sbjct: 117 KTTTSYLVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDT 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPK 240
           V +E SSH L   R+ GI+     FTNL +DH+D+H+T + Y  AK  LFE +      +
Sbjct: 177 VVMEVSSHALALGRVAGIEFDTAVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKE 236

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              A++ ADDA S+ +        C +++ G      +  + V    +  ++T+   GK 
Sbjct: 237 GKTAVLNADDAASETMRAYTR---CPIITYGVDHPADLTAQDVQLACDGMELTLMHGGKR 293

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            F     + G F V+N L A G  +A  + +  +   L     VPGRFE V    +   +
Sbjct: 294 LFHLHTGITGLFNVHNVLAAVGASLAEQVAATDIAAALTAFTGVPGRFELV-REGQDFAV 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + +E +L+  R +T G II VFGCGGDRD+ KRPIMG+I  ++ADIAI+T D
Sbjct: 353 IVDYAHTPDGMENVLRTARAVTKGHIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSD 412

Query: 419 NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           NPR+EDP  I  E+  G+        + +  +R  AI  AI      D +V+ GKGHET 
Sbjct: 413 NPRTEDPTAIVDEVERGVLPVIGDKPYEKIVDRRTAIFHAIGRAQAGDTVVILGKGHETY 472

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ +G      D +  RE +
Sbjct: 473 QILKDGTIH-FDDREQAREAI 492


>gi|89891771|ref|ZP_01203273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
 gi|89515926|gb|EAS18591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
          Length = 488

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/504 (31%), Positives = 265/504 (52%), Gaps = 32/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+ L+DL+YK   EL+       +   +  + +V  DSR I+ G +F+A+ G   DGH F
Sbjct: 1   MRNLKDLLYKVSLELV-------IGPTDIDVEQVQFDSRAIRKGDVFIALKGTAVDGHQF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I +A+A GA A++      L+D       +   + VDN  K L+L  +  Y    +   +
Sbjct: 54  IEKAVASGAVAVL------LEDLPDYQAEHVTYIQVDNAHKALALIGANYYDNPSKDLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++  S + Q+ ++ G  +  I      I       + TTP P+ +   L+ 
Sbjct: 108 VGVTGTNGKTTTTSLLYQLFKKLGFKTGLISTVEILIDGKVIPTKHTTPDPVTINSHLAA 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV +  +E SSHG+DQ R+ G+  + G FTNL  DH+DYH T   Y + K R F+ 
Sbjct: 168 MRDAGVDYCFMEVSSHGIDQQRITGLHFVGGMFTNLTHDHLDYHNTFAEYRDVKKRFFD- 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +LP ++ A+   DD   + ++    N   R L    +    +  ++          + ++
Sbjct: 227 MLPSDAFALTNRDDKNGEFML---QNTKARKLGYALKTYTDYRAQIIENQFGG---LQLK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +    + GEF  YN L   G  I +G++S  VLE + +L  V GRF++  T ++  
Sbjct: 281 VNNQELWTKMIGEFNAYNVLAIYGCAIELGLESTEVLEAISQLDGVSGRFQYFTTAAQHI 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L+ I  I +    +I V GCGGDRD+ KRP+M  IA  L+D+ I
Sbjct: 341 TAIVDYAHTPDALKNVLETINAIRTRNEKLITVVGCGGDRDKSKRPVMANIAASLSDLII 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+E+P+ I  ++  G+        +   +R  AI+TA++M  + D++++AGKGH
Sbjct: 401 FTSDNPRTENPDAILKDMEAGVEAIDFKKTLTVTDRKNAIKTAVQMAQQNDIILIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + NG +    D  I+ ++L
Sbjct: 461 ETYQEI-NGVRSDFNDRLIVADLL 483


>gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 484

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/505 (29%), Positives = 244/505 (48%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +KL+D+++     E++ QL        + ++  +  DSR    G +FVA+ G   DGHLF
Sbjct: 2   IKLKDILHAIPVQEVVGQL--------DVEVTSLCFDSRQANEGSLFVAVRGVHTDGHLF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           + +AI QG   I+V       +  A        ++V +T   L + A   YG       +
Sbjct: 54  VEKAIQQGCTLIMVE------EMPAEKSEGVTYMMVADTAYALGIAAGNFYGNPSRELKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  +    G     +      I         TTP P+ L   L  
Sbjct: 108 VGVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRD 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +G  +  +E SSH + Q R+ G++   G F+N+  DH+D+H+T   Y  AK + F++
Sbjct: 168 MVDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDD 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L  + + A+   D+     ++    N      + G +G      K+   H    + +++E
Sbjct: 228 L-DRFAFALTNGDEKNGSVML---QNTFAHKKTYGLKGVADFKAKIIESHFDGML-LNIE 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G +      L GEF  YN L   G  I +  ++  VL  L ++    GRFE + T+  G 
Sbjct: 283 GHEVWVK--LVGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAI-TSKNGV 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT +++  +L  I  +     +II V GCGGDRD+ KRP M ++A  ++D  I
Sbjct: 340 IGIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMSDKVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR+EDP +I  ++  GIP           +R EAIR A  +    D+++VAGKGH
Sbjct: 400 ITSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    + NG K    D + + +   
Sbjct: 460 EKYQDI-NGVKHHFDDREELEKTFN 483


>gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
 gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
          Length = 488

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/489 (28%), Positives = 230/489 (47%), Gaps = 20/489 (4%)

Query: 13  ELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL++ L +  +      +++++  DSR +Q   +FV I G   DGH +  +A+  GA  +
Sbjct: 5   ELLSALPLKKIIGVLPDQVSDIVIDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           V      L             ++V +T + + L A++ +    ++I  + VTGT+GK+SV
Sbjct: 65  VTERELPL-------GETIAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              +Q I    G  S   G     ++    ++  TT   +   + +     +G   +++E
Sbjct: 118 TGIIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTME 177

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAI 245
            SSHGL   RL G+      FTNL  DH+D+H T + Y +AK  LF +L   L K    +
Sbjct: 178 VSSHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVV 237

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADDA+S+               +  +                   + +    +     
Sbjct: 238 LNADDAWSERYAAMTP-FPVWTYGLKNENADFRAINCEYHDYMTSFDVEMPEGIYRVKMN 296

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF +YN L A       G     ++E +E+L  V GR E V +     +I++DYAHT
Sbjct: 297 LLGEFNIYNVLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKVCSE-LPVQIFIDYAHT 355

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++E  ++  +    G++I + G GG+RD+ KRP M + A   A+  I+T D+PR ED 
Sbjct: 356 PDAIEKAIEAAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKA-SAAEYVILTTDDPRYEDY 414

Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           + I  ++  G+    +   G+R EA+R A+E+    D+++ AGKGHE   I+ N  K   
Sbjct: 415 DSITGDLAKGMLHDNYACIGDRAEAVRHAVEIAEPGDMIIFAGKGHEDYQIIEN-TKFPH 473

Query: 484 VDCDIIREI 492
            D +I  E 
Sbjct: 474 SDAEIAIEA 482


>gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
 gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
          Length = 487

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/498 (31%), Positives = 250/498 (50%), Gaps = 28/498 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +++N +SI  +    +  ++ V  DSR +  G +FVA+ G   DGH+FI +A+A GA+
Sbjct: 4   LSKILNGVSIKQLIGSMDVTVHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVALGAK 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            +V             +  +   + V+N    L L A+  Y      +  + VTGT+GK+
Sbjct: 64  IVVCEQ------LPQDLSGHITYIQVENAGFALGLIAANFYDNPSAKLKLVGVTGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +VA+ + ++    G     I      ++    ++  TTP PI L + L  + + G  +  
Sbjct: 118 TVATLLYKLFVELGFRVGLISTVQNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCF 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH + QHR+ G+  + G FTNL  DH+D+H+T  AY  AK   F+ +LPK + A++
Sbjct: 178 MEVSSHAVAQHRITGLSFVGGVFTNLTHDHLDFHKTFDAYLKAKKAFFD-MLPKSAFALV 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD     ++    N      + G +       + V +  N   + I       +    
Sbjct: 237 NIDDKNGSVML---QNTDAYKKTYGLKNIADFKGRIVESHFNGMLMQIDTR----EVWIR 289

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F  YN L    + I +  D+  VL  L +L    GRF+ +  +  G    VDYAHT
Sbjct: 290 LVGAFNAYNLLAVYSVAILLEQDTTRVLTILSRLTGAEGRFDTL-VSGNGVIGIVDYAHT 348

Query: 366 SNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +++E +L+ I  +     +II V GCGGDRD+ KRP M  +A +L+D  I+T DNPRSE
Sbjct: 349 PDAVENVLRTIVDLRKNKEQIIAVLGCGGDRDKTKRPEMAAVAANLSDKVILTSDNPRSE 408

Query: 424 DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           DP++I  E+  GIP           +R EAI+ A+ +    D++++AGKGHE    V  G
Sbjct: 409 DPQQIIREMEAGIPADKKRHVFSITDRYEAIKAAVHLAQPGDIVLIAGKGHEKYQEVM-G 467

Query: 479 EKKMSVDCDIIREILGLI 496
           EK+   D  I++++   +
Sbjct: 468 EKRPFDDKAILKDLFKEV 485


>gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 504

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/503 (29%), Positives = 236/503 (46%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL++L+Y   P       +  +   + +I  +S DSR +  G +F A  G K DGH +I 
Sbjct: 13  KLKNLLYALEP-------LEVVGSVDCEITSISYDSRKVSEGSMFFAWKGQKTDGHCYIG 65

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           +AI + A AIV S    L      +      L V + R+ L   AS  YG   +++  + 
Sbjct: 66  EAIEKRARAIVCSEIPRL-----YVSQAVTFLKVRDPRRTLGKAASLYYGNPSQHLSLVG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ +   + + ++    +  IG     ++     +  T P    L   L  + 
Sbjct: 121 VTGTNGKTTTSFLTRYLLEKQNWKAGLIGTVCYDTTESCIPSSRTCPEGSDLQYMLYRMV 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL- 237
             G     VE SSH LDQ R++G     G +TN  +DH+DYH T + Y  +K      + 
Sbjct: 181 QAGCRAAVVEVSSHALDQGRIEGSNFRVGIYTNFTQDHLDYHLTMEEYRRSKENFIAYIR 240

Query: 238 --LPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                +   ++  DD   + + ++         V S G +   +    +       +  +
Sbjct: 241 GGKEGDGGVVLNLDDPQWRLLAEKLRKKMRIVTVSSEGRKEADLKAGSISCDRFSTKFVL 300

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              GK F     L G F V NAL++ G  + +GI     +  LE    VPGR E   +  
Sbjct: 301 EWAGKVFKVKSSLLGYFNVDNALLSLGGVLLLGIPLEQSISFLEFFPGVPGRMEKYYSKD 360

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  + +DYAH+ ++L  +L  ++     R+I+V GCGGDRD+ KRP M K+A + ADI 
Sbjct: 361 -GLLVVIDYAHSEDALSKLLHTLKCFQPKRLILVVGCGGDRDRLKRPRMAKVASENADIV 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             T DNPRSE PE+I  ++  G+    +     +R EAI+ A+ + +  D++ +AGKGHE
Sbjct: 420 FFTSDNPRSESPERIFDDMRAGVEESKKLHWIIDREEAIKQALCLADSTDIVCIAGKGHE 479

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G      D  ++++ L
Sbjct: 480 DYQEI-GGVFYPFSDRLVVQKHL 501


>gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
 gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
          Length = 495

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 256/491 (52%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA 
Sbjct: 7   ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGAN 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 67  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 126

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 127 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 186

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 187 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 244

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 245 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 304

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 305 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 363

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 364 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 423

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 424 IVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 482

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 483 DRETAQQLLEL 493


>gi|332768875|gb|EGJ99054.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shigella flexneri
           2930-71]
          Length = 471

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGGI 470


>gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
 gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
          Length = 478

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/489 (31%), Positives = 244/489 (49%), Gaps = 22/489 (4%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E++N +    ++  E    + +  DSR ++ G IFVA+ G   DGH FI  A+  GA 
Sbjct: 1   MVEILNGIDYKILKKFETGPFSGMEYDSRKVKKGDIFVALEGAAFDGHKFIDMAVENGAS 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++ S    +         +   +VV N R+ L + AS  Y K P+  L + G +G +  
Sbjct: 61  AVIGSKEIEVNH-------DITYIVVKNLRQKLGVIASNFY-KWPQKKLEIVGITGTNGK 112

Query: 130 ASFVQQICQRSGLSSF-QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +    + Q  G     +IG     + +       TTP  + L K       +G+ ++ +
Sbjct: 113 TTTTYLLEQILGEDKVSRIGTVEYKVGNEIIPAPNTTPESLDLIKICRKSVDRGIKYLIM 172

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L+  R++ I     +FTNL  +H+DYH+  + YF+AK +LF +   KE+     
Sbjct: 173 EVSSHALEMGRVEMIDFDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKENTVF-N 231

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD Y K +           +S G +   ++   +      Q++ +S +         L 
Sbjct: 232 TDDFYGKRLFDEFGG-----ISYGIESGDLNASMISHSLKTQEIELSFKEFQKKINIKLQ 286

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+F VYN L A G+ I +G+    + + LEKL   PGRFE +    +   + VDYAHT++
Sbjct: 287 GKFNVYNLLTAVGVAIRLGLSLEEITDRLEKLESAPGRFECI-EAGQNFMVVVDYAHTAD 345

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE IL  +  I   +II VFGCGGDRD  KR  M + A  L+DI IVT DNPR+EDP K
Sbjct: 346 ALENILSALNEIKIEKIITVFGCGGDRDLSKRKPMAETAEKLSDIVIVTSDNPRTEDPVK 405

Query: 428 IRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  E+  G+    +   + +R +AI  A+ M  K D++++AGKGHE   I+   +K    
Sbjct: 406 ILDEVSKGLSSLKDSLLEIDREKAIEKAVGMAKKNDIVLIAGKGHEDYQIIGK-DKIHFD 464

Query: 485 DCDIIREIL 493
           D ++  + +
Sbjct: 465 DKEVALKYI 473


>gi|308185654|ref|YP_003929785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
 gi|308056164|gb|ADO08336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
          Length = 495

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/493 (32%), Positives = 243/493 (49%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L  +      R + +++ DSR   +G +FVA+ G++ DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDLLGPWVPGAPARPLRDMTLDSRMAASGDLFVAVAGHQVDGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           V  +     D         P++ +    + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  VAEAEGEATDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQTLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q     G +S  +G     +         TT S + +   L  L+ +G T  ++E
Sbjct: 124 TQLLAQWATLLGETSAVMGTVGNGLVGHLVAAENTTGSAVDVQHMLHELAEKGATLTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A  FTNL RDH+DYH    +Y +AK  LF E   +   AI+ A
Sbjct: 184 VSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMPSYESAKWLLFSE--HQVGQAILNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + R  +A        L  G  G+++    V    N   +  S    + +   
Sbjct: 242 DDEVGRRWLARLPDAVAVTMEDNLQSGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEIDS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N L+A    +++    A ++    +L  V GR E      +   + VDYAH
Sbjct: 302 PLMGAFNVSNLLLALATLLSLNYPLATLISVAPRLQPVNGRMEVFSAAGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSED
Sbjct: 361 TPDALEKALEAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSED 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ G+           R +A+  AI      D+++VAGKGHE   I+ N    
Sbjct: 421 PQAIVKDILTGLLDPGRARVVSGRAQAVTNAIMQAQPDDIVLVAGKGHEDYQIIGNRRLD 480

Query: 482 MSVDCDIIREILG 494
            S D   +  +LG
Sbjct: 481 YS-DRATVAALLG 492


>gi|150260415|ref|ZP_01917143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
 gi|218927746|ref|YP_002345621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis CO92]
 gi|21362700|sp|Q8ZIF4|MURE_YERPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115346357|emb|CAL19229.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diam i nopimelate
           ligase [Yersinia pestis CO92]
 gi|149289823|gb|EDM39900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
          Length = 490

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/482 (34%), Positives = 239/482 (49%), Gaps = 14/482 (2%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D 
Sbjct: 10  LDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDV 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
           S       P++ + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  
Sbjct: 70  SVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQAL 129

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G +S  +G     +         TT S + +   L  L  QG T  ++E SSHGL Q R+
Sbjct: 130 GETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +
Sbjct: 190 AALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFS--THQSEHKIINADDDVGRRWLSQ 247

Query: 260 AHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              A    ++     G+ G ++   KV    N   +       + +    L G F V N 
Sbjct: 248 LPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNL 307

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA    +  G   A +L     L  V GR E      +   + VDYAHT ++LE  L  
Sbjct: 308 LVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G
Sbjct: 367 ARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILSG 426

Query: 436 IPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +           R EA+ +AI    + DV+++AGKGHE   +V N     S D   +  +
Sbjct: 427 LLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYS-DRVTVARL 485

Query: 493 LG 494
           LG
Sbjct: 486 LG 487


>gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4]
 gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella loihica PV-4]
          Length = 488

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/490 (31%), Positives = 239/490 (48%), Gaps = 22/490 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+   F               E  ++ ++ DSR I  G +FVA+ G++ DG  ++
Sbjct: 1   MHLCDLLAPWF----------HYAGGE-SLSHLTLDSREIGQGSVFVAVPGHRVDGRDYV 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENIL 118
             A++QGA A ++ +    +    +  +    +     ++ LS  AS+LY  G+    ++
Sbjct: 50  DTALSQGAVAALIHTDDPAEHGKVSQDNGLR-IYFFQLQRQLSALASQLYVLGRDRIKLI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   + Q+    G  +  +G     +     D+  TT  PI + + L   
Sbjct: 109 GVTGTNGKTSVTQLIAQLSDGLGKPAAVMGTLGNGLWGQLVDSGNTTADPITVMRQLEDF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+D +      FTNL RDH+DYH +  AY  AK RLF   
Sbjct: 169 DRQGTAVCAMEVSSHGLVQGRVDAVPFDVAVFTNLSRDHLDYHGSMDAYGAAKQRLFR-- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVE 296
               S  +I  DD   ++ ++     G    S+ G +G  I+ K+V         T+   
Sbjct: 227 FSSLSHGLINLDDPVGRQWIQDKRCKGLVGFSIQGQEGAAIYTKEVKQHSQGVSATLVWP 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PL G F + N + A G     G   A +L  +  L  V GR E   T   G 
Sbjct: 287 EGEAKIDSPLLGIFNLSNLVAALGALYLSGYAMAQLLTQVSSLKPVAGRMERFTTQE-GV 345

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +++E  L+ +R    G++  VFGCGGDRD+GKRP+M + A + AD  +VT
Sbjct: 346 TLVVDYAHTPDAIEQALRALRGHCRGKLWCVFGCGGDRDKGKRPLMARAAEENADCVMVT 405

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DN RSEDP  I  +++ G+      + + +R +AIR  + + +  D++++AGKGHET  
Sbjct: 406 SDNARSEDPMAIIQDVLAGLNKPQIALTQVDRQQAIREVVTLASNGDLILLAGKGHETYQ 465

Query: 474 IVTNGEKKMS 483
            +        
Sbjct: 466 EIAGKRLDYD 475


>gi|332098132|gb|EGJ03105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 155-74]
          Length = 471

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|296101248|ref|YP_003611394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055707|gb|ADF60445.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 495

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/495 (33%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E+  DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVPNAPERALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  +   ++ VTGT+GK++ 
Sbjct: 64  IAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYNEPSDQLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +   +G     +         TT S + +   ++ L+ QG T  ++E
Sbjct: 124 TQLMAQWAQLLGETGAVMGTVGNGLLGKVSPTENTTGSAVDVQHVIAGLAGQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  LF         AII A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLFS--THHYGQAIINA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++   +V    +   +  +    + +   
Sbjct: 242 DDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVEVNYHDSGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L   E+L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPMAELLNTAERLQPVCGRMEVFSAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALEAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R EA+  AI    + DV+++AGKGHE   IV N    
Sbjct: 421 PRAIINDILAGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG++
Sbjct: 481 YS-DRVTAARLLGVV 494


>gi|283477245|emb|CAY73156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae DSM 12163]
          Length = 495

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/493 (32%), Positives = 241/493 (48%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +  +FVAI G+  DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D         P++ +    + LS  A R Y +  E   ++ VTGT+GK++ 
Sbjct: 64  IAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +   +G     +         TT S + +   L+ L  +G +  ++E
Sbjct: 124 TQLLAQWAQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A +FTNL RDH+DYH     Y  AK  LF E   +   AII A
Sbjct: 184 ISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +++  +A        L  G  G+++   KV       +V  S    + +   
Sbjct: 242 DDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++      +     +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSED
Sbjct: 361 TPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSED 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R +A+   +    + D+++VAGKGHE   I+ +    
Sbjct: 421 PAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFD 480

Query: 482 MSVDCDIIREILG 494
            S D D +  +LG
Sbjct: 481 YS-DRDTVARLLG 492


>gi|300816123|ref|ZP_07096346.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
 gi|300531330|gb|EFK52392.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
          Length = 471

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTALGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
 gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
          Length = 512

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 255/491 (51%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA 
Sbjct: 24  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGAN 83

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 84  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 143

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 144 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 204 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 261

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 262 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 321

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 322 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 380

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 381 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 440

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   +  N     S 
Sbjct: 441 IVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVQANETIHYS- 499

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 500 DRETAQQLLEL 510


>gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
 gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
          Length = 490

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 233/501 (46%), Gaps = 25/501 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ L+           +  P       ++ +  DSR +  G  F+A+ G   DG  F+
Sbjct: 2   MTLQQLLPN---------TTLPATAAGVVLSGLQLDSRKVMPGDAFLAVQGVASDGRQFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAIA GA A++  +    + FS       P +      + +   A+R YG+     N++
Sbjct: 53  SQAIAAGAVAVLAEA----ETFSVQQEQAVPRVNFPGLSRSVGELAARWYGEPGSAMNVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+  F++      G     +G     +    Q    TTP PI L   L+ +
Sbjct: 109 GVTGTNGKTSITWFLRDALNALGHRCALVGTLGLGLKDNEQITGHTTPDPITLQAGLARV 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V++E SSH LDQHRL    +    F+NL RDH+DYH   +AY  AK  LF   
Sbjct: 169 LEAGADTVAMEVSSHALDQHRLGPTPVSVAVFSNLSRDHLDYHGDMEAYLAAKSVLFTR- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
                 A+I  DD  +  ++    + G R ++ G Q G  +    V          ++V 
Sbjct: 228 -DGVKLAVINCDDPVAYSLVGCLAD-GVRCVTFGDQTGATVRCASVAFTAEGTNAELNVG 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+ F    PL G F + N +  AG+    G+ +  +   L  +  VPGR E V       
Sbjct: 286 GESFSVTLPLFGRFNLSNLMAVAGILHGQGVSTDSLAGALAAITPVPGRMEPVQQAG-CP 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE  L+  R   +GR+  + GCGGDRD GKRP M  +A   AD  + T
Sbjct: 345 TVIVDYAHTPDGLEKALQACRAHFAGRLFCIIGCGGDRDTGKRPQMAAVAERGADHVVFT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPRSEDP+KI  E+  G+           R  A+   ++  +  DV+++AGKGHE   
Sbjct: 405 SDNPRSEDPQKIIDEMCAGLTDTGSVQIIVERDRAVMDTVQAASDGDVILLAGKGHEDYQ 464

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            V NG +  S D D+  +   
Sbjct: 465 EV-NGVRYPSDDRDLAHKAFN 484


>gi|167469519|ref|ZP_02334223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis FV-1]
          Length = 478

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/479 (35%), Positives = 238/479 (49%), Gaps = 14/479 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S  
Sbjct: 1   PERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVA 60

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
                P++ + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +
Sbjct: 61  EIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGET 120

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G     +         TT S + +   L  L  QG T  ++E SSHGL Q R+  +
Sbjct: 121 SAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVAAL 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD   +  + +   
Sbjct: 181 SFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFS--THQSEHKIINADDDVGRRWLSQLPQ 238

Query: 263 AGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A    ++     G+ G ++   KV    N   +       + +    L G F V N LVA
Sbjct: 239 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 298

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  G   A +L     L  V GR E      +   + VDYAHT ++LE  L   R 
Sbjct: 299 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAHTPDALEKALAAARL 357

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
             +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+  
Sbjct: 358 HCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILSGLLD 417

Query: 439 FIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                    R EA+ +AI    + DV+++AGKGHE   +V N     S D   +  +LG
Sbjct: 418 AGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYS-DRVTVARLLG 475


>gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
 gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
          Length = 495

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 239/480 (49%), Gaps = 25/480 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  V  DSR I+ G +FV I G   D H FIP     GA A++          +  + 
Sbjct: 23  VEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLTQRE------NVDVP 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +   +L V +    L +     Y        ++ +TGT+GK++ +  V+ I + +G    
Sbjct: 77  AGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTTTSYLVRAILRAAGRRVG 136

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G    +          TTP  + + + L+ + ++G+  V +E SSH LDQ R+ GI+ 
Sbjct: 137 LVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAGIEF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVMKRA 260
               FTNL +DH+DYH+T + Y  AK RLFE +    +     A+I ADDA    +  RA
Sbjct: 197 DTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDAAGAVM--RA 254

Query: 261 HNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           H   C VLS G  Q   +  + V    +   + +    ++      + GEF VYN L AA
Sbjct: 255 HTT-CPVLSYGVTQQAALTARDVRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVLAAA 313

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G   A GI   ++   LE    VPGRFE V    +   + VDYAHT + +E +L+  R +
Sbjct: 314 GAARAEGIGYDVIRAALEGFTGVPGRFELV-RAGQDFSVIVDYAHTPDGMENVLRTARAV 372

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436
           T GRIIVVFGCGGDRD+ KRPIMG+I  ++AD+  +T DNPR+EDP  I  E+  G    
Sbjct: 373 TRGRIIVVFGCGGDRDRTKRPIMGRIGAEMADVVYITSDNPRTEDPAAILDEVEAGALPV 432

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                + +  +R  AI  A+      D +V+ GKGHET  I+  G      D +   E +
Sbjct: 433 LGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEGTIH-FDDRETAAEAI 491


>gi|332764931|gb|EGJ95159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-671]
          Length = 472

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/472 (35%), Positives = 244/472 (51%), Gaps = 14/472 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLG 468


>gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 495

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/480 (33%), Positives = 239/480 (49%), Gaps = 25/480 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  V  DSR I+ G +FV I G   D H FIP     GA A++          +  + 
Sbjct: 23  VEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLTQRE------NVDVP 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +   +L V +    L +     Y        ++ +TGT+GK++ +  V+ I + +G    
Sbjct: 77  AGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTTTSYLVRAILRAAGRRVG 136

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G    +          TTP  + + + L+ + ++G+  V +E SSH LDQ R+ GI+ 
Sbjct: 137 LVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAGIEF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVMKRA 260
               FTNL +DH+DYH+T + Y  AK RLFE +    +     A+I ADDA    +  RA
Sbjct: 197 DTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDAAGPVM--RA 254

Query: 261 HNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           H   C VLS G  Q   +  + +    +   + +    ++      + GEF VYN L AA
Sbjct: 255 HTT-CPVLSYGVTQQAALTARDIRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVLAAA 313

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G   A GI   ++   LE    VPGRFE V    +   + VDYAHT + +E +L+  R +
Sbjct: 314 GAARAEGIGYDVIRAALEGFTGVPGRFELV-RAGQDFSVIVDYAHTPDGMENVLRTARAV 372

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436
           T GRIIVVFGCGGDRD+ KRPIMG+I  ++AD+  +T DNPR+EDP  I  E+  G    
Sbjct: 373 TRGRIIVVFGCGGDRDRTKRPIMGRIGAEMADLVYITSDNPRTEDPAAILDEVESGALPV 432

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                + +  +R  AI  A+      D +V+ GKGHET  I+  G      D +   E +
Sbjct: 433 LGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEGTIH-FDDRETAAEAI 491


>gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 490

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/496 (31%), Positives = 232/496 (46%), Gaps = 25/496 (5%)

Query: 7   IYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
             K    L+  L  +  +   +  INEV  DSR      +FVA+ G + DGH FIPQ + 
Sbjct: 5   TSKTLTSLLRGLKPLQVLGSTDIAINEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQ 64

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
            G  A+VV +          +     I+ V N+ + L   AS  Y      +  + VTGT
Sbjct: 65  AGISALVVET------IPENVPDQVTIVQVANSAQALGFLASAFYEHPSHQLTLVGVTGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++  + +  +    G     +      I+S    +  TTP  + +   L+ +   G 
Sbjct: 119 NGKTTTVTLLYDLFSGLGYKCGLLSTVENRIASQVIASTHTTPDAVAINALLAQMVEAGC 178

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSH +DQ R+ G+      FTN+  DH+DYH T   Y  AK   F++L  K +
Sbjct: 179 EYAFMEVSSHAVDQGRIAGLDFKGAIFTNITHDHLDYHLTFDNYIRAKKSFFDQL-SKRA 237

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD   K  M    N    V     +       ++        + + ++ +DF  
Sbjct: 238 FALVNIDD---KRGMVMTQNTAASVNRYSLRQMAEFRARIIENSL-TGLHLDIDNQDFYG 293

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L GEF  YN L      + +  D    L  L +L    GRF++V    R     VDY
Sbjct: 294 R--LIGEFNAYNLLAVYATAVLLEQDKVETLTQLSRLKAAEGRFDYVMDQKRQVTAIVDY 351

Query: 363 AHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AHT ++LE +L+ I+ +      ++ V GCGGDRD+ KRP M K+A   +D  I+T DNP
Sbjct: 352 AHTPDALEKVLETIQALRKADAKVLTVVGCGGDRDRTKRPTMAKVACQYSDQVILTSDNP 411

Query: 421 RSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+PE I  E+  G+P       +   +R EAIRTA  +    DV++VAGKGHE    +
Sbjct: 412 RSEEPEAIIREMEAGVPAGSRRQVLSITDRKEAIRTACRLAQSGDVVLVAGKGHEKYQEI 471

Query: 476 TNGEKKMSVDCDIIRE 491
             G K    D +I++E
Sbjct: 472 K-GVKHPFDDKEILKE 486


>gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 492

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/493 (30%), Positives = 231/493 (46%), Gaps = 20/493 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L + L    +    + +  +  DSR +  G +FVAI G+  DG  FI +AI  GA A
Sbjct: 1   MRDLKDILKYIEIDAPSQLVKHLRLDSREVTPGDVFVAIKGHTLDGGQFIAKAIENGAIA 60

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           I+       +          P+ +V    K L   ASR Y +  +  +++ VTGT+GKS+
Sbjct: 61  IIADRLCEFESSFE------PLYLVSELDKKLPELASRFYSQPSQTLDLIGVTGTNGKST 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             + +  + Q     S  IG               TTPS + L   LS L+SQ    V++
Sbjct: 115 TTAMIAHLAQFCSTESAIIGTLGYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL Q R+   +  A  FTNL RDH+DYH    +Y +AK+ LF +  P+    ++ 
Sbjct: 175 EVSSHGLVQQRVAKCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFEPQ--VVVLN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            DD  +++ +++                   ++++   V          +S    D    
Sbjct: 233 QDDFQAEQWLEKYDFNNLICYGRKNLAPKNARYVYFSDVEYSSEGISAQLSTSWGDISIK 292

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF +YN   A    + +G     ++    +L  V GR +          +  DYA
Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLEQLVAGCAQLQPVAGRMQAFSQAGMPTCVV-DYA 351

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L + L+ ++    G +  VFGCGGDRD+GKR +M + A   A+  I+T DNPRSE
Sbjct: 352 HTPDALALALQALQLHVPGGVSCVFGCGGDRDKGKRALMAQAAEQNANKIIITSDNPRSE 411

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +P+ I A++  G+        + +R  AIR AIE     DV+++AGKGHE   I+ +   
Sbjct: 412 NPDDIIADVAGGLTHPQNAHLEADRATAIRFAIENATADDVILIAGKGHEDYQIIGDKRI 471

Query: 481 KMSVDCDIIREIL 493
               D   ++E L
Sbjct: 472 D-FCDRRYVQEQL 483


>gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
          Length = 495

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 164/503 (32%), Positives = 249/503 (49%), Gaps = 35/503 (6%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E+ N +    ++     +I  +++DSR +Q G +F  + G K DGH F   A + GA 
Sbjct: 3   LNEIANWILAAKLEGDGNVQITGLNNDSRSVQPGTLFFCLPGYKVDGHDFAAAAASNGAA 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+VV     +           P L+V ++R  +++ + R Y    + +  + VTGT+GK+
Sbjct: 63  ALVVERKLDVA---------IPQLIVKDSRLAMAIISDRYYDHPSQKLRLIGVTGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +++I   +G S+  IG   T  +        TTP  + L + L+ ++  GV   +
Sbjct: 114 TTTYLIERILSDAGQSAGVIGTIETRYAGNTLPMSGTTPGALELQQYLAAMAEAGVDSCA 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------- 239
           +E SSH LDQ R  G +   G FTNL +DH+DYH T + Y  AK  LF  L         
Sbjct: 174 MEVSSHALDQGRTWGCRFRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAEA 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK 298
           + S A++ ADD+ S      A      +L+ G      +    +          +     
Sbjct: 234 ERSYAVLNADDSASDLFANAAA---VEILTYGIDREADVRASDIRITSRGTTFRLETFRG 290

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    + G+F VYNAL A  + +  GI    + + LE L  VPGR E V    +   +
Sbjct: 291 GADISIRMVGKFNVYNALAATSVALLEGISIEAIKQSLEALPGVPGRVESVDA-GQPYAV 349

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE +L+ ++    GRII VFGCGGDRD+ KRPIMG+IA   ADI ++T D
Sbjct: 350 IVDYAHTPDGLENVLRTVKEFVEGRIICVFGCGGDRDRTKRPIMGRIAAKYADICVITSD 409

Query: 419 NPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPRSE+P  I  ++  G+         ++   +R  AI  A+EM +  DV+++AGKGHET
Sbjct: 410 NPRSENPHAILLDVEEGLKADGIPSNRYLLIEDRRHAIEKAVEMASPGDVVLIAGKGHET 469

Query: 472 VHIVTNGEKKM-SVDCDIIREIL 493
             I+  G K     D  +  E +
Sbjct: 470 YQII--GPKTFDFDDRLVAEEAI 490


>gi|259907412|ref|YP_002647768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
 gi|224963034|emb|CAX54517.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
          Length = 490

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/489 (32%), Positives = 240/489 (49%), Gaps = 14/489 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +     ER + E++ DSR   +  +FVAI G+  DG  FIPQAIAQG  A++  +
Sbjct: 3   DLLAPWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
               +D         P++ +    + LS  A R Y +  E   ++ VTGT+GK++    +
Sbjct: 63  EGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +   +G     +         TT S + +   L+ L  +G +  ++E SSH
Sbjct: 123 AQWAQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL QHR+  +   A +FTNL RDH+DYH     Y  AK  LF E   +   AII ADD  
Sbjct: 183 GLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINADDEV 240

Query: 253 SKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  +++  +A        L  G  G+++   KV       +V  S    + +    L G
Sbjct: 241 GRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N LVA    +++      +     +L  V GR E      +   + VDYAHT ++
Sbjct: 301 AFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGK-PTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSEDP  I
Sbjct: 360 LEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAI 419

Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+           R +A+   +    + D+++VAGKGHE   I+ +     S D
Sbjct: 420 VRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-D 478

Query: 486 CDIIREILG 494
            D +  +LG
Sbjct: 479 RDTVARLLG 487


>gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio cholerae]
          Length = 495

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/491 (32%), Positives = 257/491 (52%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+ EDG  FI +AIAQGA 
Sbjct: 7   ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGAN 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 67  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 126

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 127 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 186

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 187 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 244

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  ++V    +   +       + +   PL 
Sbjct: 245 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLI 304

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 305 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 363

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 364 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 423

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 424 IVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 482

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 483 DRETAQQLLEL 493


>gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 483

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/494 (32%), Positives = 242/494 (48%), Gaps = 27/494 (5%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQG 67
           +  +L+  L+   ++  E ++++ +  DSR I+    +F+AI G K DGH FI  AIA G
Sbjct: 2   ELSKLLTGLNYVCVKGNEHQEVDHMIYDSR-IKTNAGLFIAIEGFKTDGHQFIEAAIANG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A+AI+V            I+ +  I+ V++TR  ++L A+  YG   +   ++ VTGT+G
Sbjct: 61  AKAILVQKDVE-------IKEDVTIIKVEDTRLAMALVANNAYGHPSKQFELVGVTGTNG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+S+   + QI +        IG     I S       TTP  + L      +    V  
Sbjct: 114 KTSITFLLGQILEAYHKKIGIIGTIENRIGSQILKAERTTPESLDLQALFKKMVESQVDT 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH L   R+ G     G FTNL +DH+D+HQT + Y  AK +LF          
Sbjct: 174 TLMEVSSHALALSRVAGSDFKVGIFTNLTQDHLDFHQTMENYAAAKAKLFT----MCETG 229

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+  D  Y  E++K    A C +++             V       + T+  +   F   
Sbjct: 230 IVNKDSDYINEIIK---GATCNLVTYAIDKDADYKATNVIITAAGVEYTLVCDQGTFKVD 286

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+F VYN L       A+ I    +L  L+    VPGR +    + +G  + VDYA
Sbjct: 287 VPIPGKFTVYNTLAVIAAARALEIPMTHILATLKIAKGVPGRVQAFK-SIKGYSVLVDYA 345

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE +L  I+    G II VFGCGGDRD+ KRPIMGKIA   +D   +T DNPR+E
Sbjct: 346 HTPDGLENVLSTIKEFAQGHIITVFGCGGDRDKTKRPIMGKIAATYSDHVFITSDNPRTE 405

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP  I  E+  G+      +++  +R  AI  A+     +DV+++AGKGHE   I+ +  
Sbjct: 406 DPLLILDEVEVGVKAITDNYVKVEDRKAAIEMALSEAKAEDVVLIAGKGHENYQILKD-R 464

Query: 480 KKMSVDCDIIREIL 493
                D +I+   L
Sbjct: 465 IIHFDDSEIVNAYL 478


>gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 487

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 251/502 (50%), Gaps = 35/502 (6%)

Query: 11  FPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+N++S+  +       I  +  DSR  +   +F+A+ G++ DGH +I  AIA G++
Sbjct: 4   LQELLNKVSVQQIIGDTNLPIKSICLDSREAEKDSLFIALPGSQVDGHQYIADAIALGSK 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           AI+         +   + ++   + V N  + L   AS  Y      +  +AVTGTSGK+
Sbjct: 64  AIICEK------YPEHLATHVTYIQVSNVTQALGTIASNFYKNPSTKLKLVAVTGTSGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVT 183
           S    + ++ ++ G   + +G  STI +   D        TP+ I + KAL+ + + G  
Sbjct: 118 STVHLLYRLFRQLG---YSVGMLSTIHNQINDQAFPSTLTTPNAIDINKALAQMVTAGCQ 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +EASSH + Q+RL G++L    F N+  DH+DYH T  AY  AK +LF+EL    + 
Sbjct: 175 FCFMEASSHAIVQNRLAGLELAGALFLNISHDHLDYHLTFDAYIQAKKKLFDELT-ANAF 233

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   DD   K ++    N      S+  Q       +V A    Q + + + G++  F 
Sbjct: 234 VLYNIDDKRGKIMI---QNTRATTYSMAIQRPADFTAQVLANTW-QGLELRIGGQNVWF- 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F   N L A      +G  S  +L  L  +  + GRF+ + T  +   + +DYA
Sbjct: 289 -QLLGTFNASNLLAAYATACLLGQPSQDILVALSSIKPITGRFQHIHTPKK-PDVIIDYA 346

Query: 364 HTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           H   +LE IL +I+ I       G+II + GCGG+RD  KRP+M +IA  L+D  I+T D
Sbjct: 347 HKPEALEKILLSIQQIRESAKQQGKIITIIGCGGNRDTQKRPMMARIAYKLSDQLILTSD 406

Query: 419 NPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           NPR EDP+ I  E+  G+        I   +R EAI+ A +M    D++++AGKGHE   
Sbjct: 407 NPRYEDPKAIIEEMKQGLRSAEQLKTITIIDRAEAIQAAYQMAQPADIILIAGKGHENYQ 466

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
            +  G K    D +I+ +++ +
Sbjct: 467 EIA-GIKYPLSDEEIVSKLMAV 487


>gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
 gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
          Length = 497

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/471 (33%), Positives = 234/471 (49%), Gaps = 13/471 (2%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  V +DSR +  G +F+A  G   DG  FIP A+A GA  ++   A     F+     
Sbjct: 22  PLKRVETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPA---DGFNWNPAW 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N P L V   R    + AS  YG+      ++ +TGT+GK+S++ ++ Q        +  
Sbjct: 79  NVPNLAVPQLRARAGIVASHAYGEPSRAMTVIGITGTNGKTSISHWLAQAFSLLAHKAAL 138

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG           +   TTP P+ + + L+    QG   V++E SSHGLDQ R++G+   
Sbjct: 139 IGTVGNGFYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFA 198

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH + + Y  +K RLF         AII ADDA+ +E+         
Sbjct: 199 TAVFTNLTRDHLDYHGSMEEYGASKARLFH--WEGLRHAIINADDAFGRELAAGIDRQRT 256

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + ++ G +   +  + + A  +  Q+T++    + +   PL G F   N L         
Sbjct: 257 QTVTYGLEQGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLLGRFNAANLLACLATLCVN 316

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GR 383
           G+        L ++    GR + +G       + +DYAHT ++LE  L  +  I     R
Sbjct: 317 GVALKDAAAVLSRIQPARGRMQRLG-GGHEPLVVIDYAHTPDALEKALATLAEIRPAGNR 375

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK 442
           +  VFGCGGDRD+GKRP+MG IA  +AD+A+VT DNPRSE+P+ I A+I  G+      +
Sbjct: 376 LYCVFGCGGDRDKGKRPMMGAIATRIADVAVVTSDNPRSEEPQAIIADIRAGMGETGHVE 435

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R  AIR AI      D+++VAGKGHE    +  G K+   D  I  E L
Sbjct: 436 ADRAAAIRWAIAAARAGDIVLVAGKGHEEYQDIR-GVKQPFSDFRIAEEAL 485


>gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 492

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/493 (29%), Positives = 229/493 (46%), Gaps = 20/493 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L   L    +    +++  +  DSR +  G +FVAI G++ DG  FI +AI  GA A
Sbjct: 1   MRDLKAILKYIEIDAPSQQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIENGAVA 60

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           I+       +          P+ +V    K L   ASR Y +     +++ VTGT+GKS+
Sbjct: 61  IIADRLCEFETSFE------PLYLVSELTKKLPELASRFYQQPSHMLDLIGVTGTNGKST 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             + +  + Q     S  IG               TTPS + L + L+ L  Q    V++
Sbjct: 115 TTAMIAHLAQFCNSQSAIIGTLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL Q R+   +  A  FTNL RDH+DYH     Y +AK+ LF++  P+    ++ 
Sbjct: 175 EVSSHGLVQQRVAQCQFKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKDFEPE--LVVLN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            DD  + + +++                   +F++   V          ++    D    
Sbjct: 233 QDDGQTDQWLEKYSFNSLVCYGRKNLPPKNAQFVYFSDVTYSAQGIAAQLTTSWGDIAIK 292

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF +YN   A    + +G   A ++    +L  V GR +      +     VDYA
Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLAQLIAGCAQLQPVAGRMQAFSAKGK-PTCIVDYA 351

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT  +L + L+ ++    G +  VFGCGGDRD+GKR +M + A   AD  I+T DNPRSE
Sbjct: 352 HTPEALALALQALQQHVPGGVSCVFGCGGDRDKGKRALMAQAAEQNADKVIITSDNPRSE 411

Query: 424 DPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +P+ I A++  G+    +   + +R  AI  AI      +V+++AGKGHE   I+ +   
Sbjct: 412 NPDAIIADVAQGLAQPTKAYLEADRATAISYAISNAKADEVILIAGKGHEDYQIIGDQRI 471

Query: 481 KMSVDCDIIREIL 493
               D   +++ L
Sbjct: 472 D-FCDRRYVQQQL 483


>gi|291086123|ref|ZP_06354888.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069447|gb|EFE07556.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
          Length = 471

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/474 (33%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   +G +FVA++G++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  E   ++ VTGT+GK++    + Q CQ  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGKTTTTQLLAQWCQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLAGLVAQGATVGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  +    + +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAVDVNYHDSGATIRFTSSWGNGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVFSAPGK-TTVVVDYAHTPDALEKALQAARLHCTGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEEPRAIINDILAGMLDAGRAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI    + DV++VAGKGHE   IV +     S D   +  +LG+I
Sbjct: 418 EGRAEAVTNAIMQAQENDVVLVAGKGHEDYQIVGSQRLDYS-DRVTVARLLGVI 470


>gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
 gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
          Length = 499

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 258/501 (51%), Gaps = 10/501 (1%)

Query: 1   MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+     +    ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  F
Sbjct: 1   MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIAQGA  ++  +     +     R+  P++ +    + LS  A RLYG H   ++ 
Sbjct: 61  IDNAIAQGANVVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++   + Q  +  G  +  +G T     +  +    TT + + +   L  L+
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G  + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E  
Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +   AII  DDA   + +K+   A    +++     + I  ++V    +   +      
Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVAKPNTAQAIWAREVAYAESGITLNFESSW 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +  +
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AK 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TD
Sbjct: 358 MVVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   +
Sbjct: 418 DNPRSESPQAIVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + N     S D +  +++L L
Sbjct: 478 LANETIHYS-DRETAQQLLEL 497


>gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
 gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
          Length = 506

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/487 (32%), Positives = 241/487 (49%), Gaps = 15/487 (3%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S +  +WRE  +  ++ DSR I+   +FVA+ G+  DG  FIP AI  GA A++  +   
Sbjct: 21  SDWQEKWREHSVANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATAVLAEADSI 80

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   +    I+      ++LS  A+R Y +      +LAVTGT+GK++++  + Q 
Sbjct: 81  ANHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW 140

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G ++  +G T   + +       TT + I +   L  L  QG    ++E SSHGL 
Sbjct: 141 ANLIGYNAGVMGTTGNGLLNSLIPAVNTTGNAIEIPHVLHDLVEQGADFAAMEISSHGLV 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++ +A  FTNL RDH+DYH     Y +AK  LF E   +    +I ADD     
Sbjct: 201 QGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTE--HQAGIPVINADDDIGLS 258

Query: 256 VMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +    NA   V     L  GYQG+ + L  V        ++         F  PL G F
Sbjct: 259 WLADLPNAVAVVTDKARLGEGYQGQALWLTDVAYSTQGVNISFDSSWGAGQFTAPLVGSF 318

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L+A    +A+G     ++    +L  V GR E V   S    + VDYAHT ++LE
Sbjct: 319 NVSNLLLALATLLALGHSIDKLIAAAPRLTAVIGRME-VFQRSDKPMVVVDYAHTPDALE 377

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+ +R    G++  +FGCGGDRD GKRP+M +I+  LAD  I+TDDNPR+E P  I +
Sbjct: 378 KALQALRVHCQGKLWCIFGCGGDRDIGKRPMMAEISERLADQIIITDDNPRTEAPAGIVS 437

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +++ G+          +R  A   AIE     D++++AGKGHE   ++ +     S D +
Sbjct: 438 DMLQGLTLPQQAQVIHDRKLACTYAIEHARANDIILLAGKGHEDYQVLADRTIHYS-DRE 496

Query: 488 IIREILG 494
            ++ + G
Sbjct: 497 TVQALFG 503


>gi|212712752|ref|ZP_03320880.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
 gi|212684668|gb|EEB44196.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
          Length = 495

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/495 (31%), Positives = 235/495 (47%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L   L+ F +      + E++ DSR   AG +F+A+ G++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVSAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    ++         P++ +++    LS  A   Y +      ++ VTGT+GK++ 
Sbjct: 64  IAEAHGEAEEGEIRFVHGVPVIYLNDLNNRLSALAGEFYHQPSSQMKLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G     I      +  TT S + +   L+ L ++  T  ++E
Sbjct: 124 TQLIAQWAKGLGETSAVMGTVGNGILGHVSPSENTTGSAVDIQLELTQLLNKKATLTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  ++  A  FTNL RDH+DYH     Y  AK  LF          II A
Sbjct: 184 VSSHGLVQGRVAALQFDAAVFTNLSRDHLDYHGDMANYEAAKWLLFS--THHTKTQIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD    + ++R   A        +   +QG ++    V        +  +    +  F  
Sbjct: 242 DDEVGLKWLQRLPQACAVTMEDSIPANWQGPWLKTTDVDYHDKGATIHFASTWGNGSFES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N L+A    + +      +L     L  V GR E      +   + VDYAH
Sbjct: 302 PLMGAFNVSNLLLAMATLLMMDYPLEKLLATTNALMPVCGRMEVFSVTGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  VFGCGGDRD+GKRP+MG  A   AD  ++TDDNPRSED
Sbjct: 361 TPDALEKALAAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNPRSED 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ GI      +    R EA+   I   +  DV++VAGKGHE   I+ +    
Sbjct: 421 PLDIINDIMAGILDSSRVLAIPGRPEAVTNTILQAHPDDVILVAGKGHEDYQIIGSRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG++
Sbjct: 481 YS-DRLTVARLLGVM 494


>gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 476

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/472 (31%), Positives = 236/472 (50%), Gaps = 20/472 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + + S  +  G +FVA+ G + DG  FI  A+A+GA  +V       +  +    +  
Sbjct: 17  TGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGARVVVH-----KEGVAVAPAAGV 71

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L V N  + L + A    G       I+ VTGT+GK++ A  +  +   +GL +  IG
Sbjct: 72  STLAVPNPAQTLGVLARAACGTESRLPRIVGVTGTNGKTTTAHLIHFLLSANGLMTGLIG 131

Query: 149 P-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +         +TTP  + L   +  +   GV  + +E SSH LDQ R  G+ +  G
Sbjct: 132 TVHCSWPGAKVAATMTTPDCLSLHGIIGRMVRDGVEDLVMEVSSHALDQERTAGLPMAVG 191

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            F+NL +DH+DYH   + YF AK RLF +   + +  ++  DD Y + +          +
Sbjct: 192 VFSNLTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLVNVDDEYGRRL----KMMRPDL 247

Query: 268 LSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           L  G   +   L+     A      + IS +G  ++    L G    YN L A G  + +
Sbjct: 248 LGFGLDSEDAELRCRILGAGTEGMTLGISHDGNAWELRTSLVGRHNAYNLLSAVGAGLLL 307

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ +A     L +    PGR E V  N+R   I++DYAHT ++LE +   ++++   R+I
Sbjct: 308 GLTAAQ-CACLSQALGAPGRLERVP-NTRELNIFIDYAHTPDALEKVSVALKSMGFKRLI 365

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD  KRP+MG      AD+A+VT DNPR+EDPE I  +I  G+ G    + +
Sbjct: 366 TVFGCGGDRDASKRPLMGAAVARHADVAVVTSDNPRTEDPESILDQIEPGLAGARLVLRE 425

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +R +AI  A++ +   D L++AGKGHE   ++   EK+   D +++RE L 
Sbjct: 426 VDRRKAIALAVQSMQPGDALLIAGKGHEDYQVIGT-EKRHFSDFEVVRECLA 476


>gi|327392719|dbj|BAK10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           MurE [Pantoea ananatis AJ13355]
          Length = 471

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/472 (33%), Positives = 232/472 (49%), Gaps = 14/472 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVAI G++ DG  FIPQAIAQG  A++  +     D         P+
Sbjct: 1   MTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +    + ++ VTGT+GK++    + Q     G +S  +G  
Sbjct: 61  IYLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGKTTTTQLLAQWASLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L  L  +G +  ++E SSHGL QHR+  +   A  F
Sbjct: 121 GNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRVAALPFSAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH   Q Y +AK  LF E   +   AII ADD   +  +    +A      
Sbjct: 181 TNLSRDHLDYHGDMQQYESAKWLLFSE--HQVGVAIINADDEVGRRWLANLPDAVAVTME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L  G  G+++    V    N   +       + +    L G F V N L+A    +A+
Sbjct: 239 NNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L    +L  V GR E      +   + VDYAHT ++LE  L+  R    G++ 
Sbjct: 299 GYALDDLLRAAARLQPVNGRMEVFSATGK-PTVVVDYAHTPDALEKALEAARLHCKGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            +FGCGGDRD+GKRP+MG IA   ADI +VTDDNPRSEDP+ I  +I+ G+         
Sbjct: 358 CLFGCGGDRDKGKRPLMGAIAEQFADIVVVTDDNPRSEDPQAIVQDILSGLLDPGRARVV 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             R +A+ + I      D+++VAGKGHE   I+ N     S D   +  +LG
Sbjct: 418 AGRAQAVTSTIMQAQPDDIVLVAGKGHEDYQIIGNQRLDYS-DRATVATLLG 468


>gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
 gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 487

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/490 (31%), Positives = 237/490 (48%), Gaps = 16/490 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+      
Sbjct: 1   MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AK 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 55  GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A G  + +G     +L  L +L    GR + +G       + VDYAHT +
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLG-GGDKPLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    
Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAA 411

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I  G     +     +R EAI   I      DV+++AGKGHE    + +G +    
Sbjct: 412 IIADIRKGFAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFS 470

Query: 485 DCDIIREILG 494
           D +     L 
Sbjct: 471 DIEQAERALA 480


>gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
 gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
          Length = 512

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/491 (32%), Positives = 254/491 (51%), Gaps = 10/491 (2%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA 
Sbjct: 24  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGAN 83

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++  +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++
Sbjct: 84  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTI 143

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G  +  +G T     +  +    TT + + +   L  L+ +G  + ++E
Sbjct: 144 TQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALE 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  
Sbjct: 204 TSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINV 261

Query: 249 DDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDA   + +K+   A    +++     + I  + V    +   +       + +   PL 
Sbjct: 262 DDAVGAQWVKQLPQAIGVSLVAKPNTAQAIWARHVAYAESGITLNFESSWGEGELHAPLI 321

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF   N L+A    +++G + + +L    KL  V GR E      +  ++ VDYAHT +
Sbjct: 322 GEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPD 380

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ 
Sbjct: 381 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 440

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N     S 
Sbjct: 441 IVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS- 499

Query: 485 DCDIIREILGL 495
           D +  +++L L
Sbjct: 500 DRETAQQLLEL 510


>gi|269137990|ref|YP_003294690.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|267983650|gb|ACY83479.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|304558037|gb|ADM40701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda FL6-60]
          Length = 469

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 164/472 (34%), Positives = 234/472 (49%), Gaps = 14/472 (2%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR   AG +FVA+VG+  DG  FIPQAIAQG  A++  +    +D S       P++ 
Sbjct: 1   MDSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVY 60

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + +  + LS  A R YG+      ++ VTGT+GK++    + Q  Q  G +   +G    
Sbjct: 61  LSHLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGN 120

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +      +  TT S + +   L  L+  G T V++E SSHGL Q+R+  +   A +FTN
Sbjct: 121 GLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAASAFTN 180

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-- 269
           L RDH+DYH   + Y  AK RLF          II ADD   +  + +  +A    +S  
Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFS--THHSGEKIINADDETGRRWLDKLPDAVAVTVSGA 238

Query: 270 --VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G+ G+++  + V        +              L GEF V N LVA    +A+G 
Sbjct: 239 LPAGWAGRWLAARSVAYHDGGATIAFDSCWGAGTLNSRLMGEFNVSNLLVALATLLALGY 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +     +L  V GR E      +   + VDYAHT ++LE  L   R    G +  +
Sbjct: 299 PLAALCAASGQLQPVCGRMEVFQAPGK-PTVVVDYAHTPDALEKALLAARLHCQGLLWCL 357

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD GKRP+MG IA   AD  +VTDDNPRSE+P  I  EI+ G+      +    
Sbjct: 358 FGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLAMAIPG 417

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R EA+  A+     QDV++VAGKGHE   +V N     S D   +  +LG++
Sbjct: 418 RAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDYS-DRVTVARLLGVV 468


>gi|324008320|gb|EGB77539.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 57-2]
          Length = 471

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 244/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSA--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVIQAKENDVVLVAGKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 470


>gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
 gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
          Length = 500

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/499 (31%), Positives = 244/499 (48%), Gaps = 21/499 (4%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   E ++  ++      E +I  ++SDSR      +FVA+ G   DGH FI  A++ G
Sbjct: 4   LKRLLERLDVSAVVGGIQSEMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGDAVSLG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           ++A+V        +   T       ++V + R+ ++  A   YG   + +  + VTGT+G
Sbjct: 64  SKAVVCE------ELPETPAERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGVTGTNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ A  +  +    G+ +  IG    +          TTP    L +  S ++ +G   
Sbjct: 118 KTTTARLMAGMMNDCGIRTGYIGTGLALAGDEKILLERTTPEAEELHRLFSIMAERGCRA 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH L   R  GI      +TNL +DH+D+H T ++Y +AK  LF  + P E   
Sbjct: 178 VVMEVSSHALVLQRTFGIVFSGAVYTNLTQDHLDFHHTMESYASAKRLLFGAVSP-EGFV 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY------QGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++ ADD  +  + +    +     +VG       +GK      + A     +V I  +G+
Sbjct: 237 VVNADDPRAGFMAENRGKSRLYCCTVGDSHYACSEGKAFSATLLEAGLQAARVAIDADGR 296

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +D LF L G F V N L      +A+G++   VL  L     V GR E V   +     
Sbjct: 297 GYDVLFRLTGLFNVMNLLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAAGDFFA 356

Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VDYAHT ++LE ++  +  +    G +IVVFGCGG+RD  KR +MG+IA   AD  I+T
Sbjct: 357 VVDYAHTPDALEKVIGTLNELKPEEGELIVVFGCGGNRDHEKRSVMGRIASRGADRLIIT 416

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR E+PE I  +I  GI  PG++   +R EAI   + +L + D+L+VAGKGHET   
Sbjct: 417 SDNPRDENPESILDDIAEGIVSPGYMRFCDRAEAIHCGVNLLKEGDILLVAGKGHETCQE 476

Query: 475 VTNGEKKMSVDCDIIREIL 493
              G      D +   E++
Sbjct: 477 -KAGASSFFSDRETTEEVI 494


>gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
 gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
          Length = 485

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/510 (30%), Positives = 249/510 (48%), Gaps = 40/510 (7%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+LQD++Y      L+   S        R++  +  DSR +    +F AI G   DGH +
Sbjct: 1   MQLQDVLYGITITSLVGNTS--------REVTALVFDSRKVVKDSVFFAIRGTMSDGHQY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I   +  GA  ++              R     + V+N+   L   A+  YG     +  
Sbjct: 53  IDDTVEAGASVVICE------VLPEIRRELATYIQVENSSVALGQMAANFYGHPSSKLKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKA 173
           + +TGT+GK+++A+ + ++ +  G   + +G  ST+ +   D    +  TTP PI L + 
Sbjct: 107 IGITGTNGKTTIATLLFKLFRELG---YGVGLISTVQNHINDVVVPSTHTTPDPIALNEL 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  +   G  +  +E SSH + QHR++G+    G F+N+  DH+D+H T   Y  AK   
Sbjct: 164 LQSMVDDGCEYCFMEVSSHAVSQHRIEGLTFRGGVFSNITHDHLDFHHTFDNYIKAKKAF 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+ +LP  + A+   DD     VM +   A  +  ++     F       +        +
Sbjct: 224 FD-VLPANAFALTNLDDRNG-MVMLQNTKATKKTYALKQLADFKAKIIENSFSG-----L 276

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++    D  F L G F  YN L   G  + +G +   VL  L  L    GRF++V +  
Sbjct: 277 HLDIDQADVFFKLVGSFNAYNLLAVYGTAMMLGEEQLAVLTALSNLTGAEGRFDYVSSKQ 336

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +   I  DYAHT ++++ +L  I+ I  G  ++I + GCGGDRD+ KRP+M ++A D +D
Sbjct: 337 QIIGIV-DYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPVMAQVACDWSD 395

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T DNPR+EDP+ I +E+  G+        +   +R EAI+TA  +    D++V+AG
Sbjct: 396 KVILTSDNPRTEDPQTILSEMEAGVSPTNKRKTLSILDRREAIKTACHLAKPGDIIVLAG 455

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           KGHE    + NG K    D +I+ E L LI
Sbjct: 456 KGHEKYQDI-NGVKYHFDDKEILTEQLNLI 484


>gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAb1]
 gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 487

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/490 (31%), Positives = 237/490 (48%), Gaps = 16/490 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+      
Sbjct: 1   MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AK 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 55  GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A G  + +G     +L  L +L    GR + +G       + VDYAHT +
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLG-GGDKPLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    
Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAA 411

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I  G     +     +R EAI   I      DV+++AGKGHE    + +G +    
Sbjct: 412 IIADIRKGFAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFS 470

Query: 485 DCDIIREILG 494
           D +     L 
Sbjct: 471 DIEQAERALA 480


>gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
 gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
          Length = 483

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/503 (29%), Positives = 239/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+     ++  ++          ++   + DSR +  G IF+A  G + DG+ F 
Sbjct: 1   MNLKELLQGISAKIYGKVPTL-------EVRNFTRDSRCVGVGDIFIACRGEQHDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ +GA AI+ S              +   +V     +  +  A++ YG+  E +   
Sbjct: 54  ADAVERGAIAILSSFYNPFL--------SIVQIVTSCVEQLEAELAAKFYGRPSEKLEVF 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++ +   S   +  IG    I    +  +  TTPS   L K  + +
Sbjct: 106 GVTGTNGKTTVTYMIKALLDHSHKPAGLIGTIEHILGEGSIHDSFTTPSACLLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  V++E SS GL+ +R        G  TN+  DH+D+H T + Y  AK +LF +L
Sbjct: 166 VKNRRKAVAMEVSSIGLELNRTAQTSFDVGILTNVTLDHLDFHGTLENYLTAKEKLFSQL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
            PK   A+I AD  Y+      A +   R ++ G  +        +       + T+   
Sbjct: 226 -PKNGCAVINADSPYASRFCSIASS---RCVTYGIEEAAEYRACDLQLSLLGTRYTLVHR 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK +    PL G + VYN L A          +   +L  LE   +  GR E V +    
Sbjct: 282 GKSYLCKSPLIGRYNVYNTLAAIAAVHERSNQELPELLVALENAPLPKGRLEPVFSGPCP 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             IY+DYAHT ++L+ +L  ++ +    GR+I+VFGCGGDRD+ KR +M ++A      +
Sbjct: 342 --IYIDYAHTPDALDNVLATLKELMSCQGRVIIVFGCGGDRDRSKRKLMARVAERY-GFS 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           IVT DNPR EDPE I  EI  G     +  + +R +AI  AI M + +DV+++AGKGHET
Sbjct: 399 IVTTDNPRKEDPEVIIHEICEGFTSQKYCVEQDRKKAILRAISMASDKDVVLIAGKGHET 458

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I  +       D  ++ E+L 
Sbjct: 459 YQIFKHQTL-YFSDKQVVNEVLA 480


>gi|206577734|ref|YP_002240443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
 gi|206566792|gb|ACI08568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
          Length = 495

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/495 (32%), Positives = 247/495 (49%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +  +F+A+ G++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVPNAPERILREMTLDSRVAASCDLFIAVQGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D         P++ +    + LS  A R Y +  +   ++ VTGT+GK++ 
Sbjct: 64  IAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G     +         TT S + +   LS L  QG T  ++E
Sbjct: 124 TQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++    V    +   +       + +   
Sbjct: 242 DDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGNGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L+   +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N    
Sbjct: 421 PRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG +
Sbjct: 481 YS-DRVTVARLLGAV 494


>gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
 gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
          Length = 487

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/490 (31%), Positives = 237/490 (48%), Gaps = 16/490 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+      
Sbjct: 1   MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AK 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 55  GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCCIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A G  + +G     +L  L +L    GR + +G       + VDYAHT +
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLG-GGDKPLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    
Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAA 411

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I  G     +     +R EAI   I      DV+++AGKGHE    + +G +    
Sbjct: 412 IIADIRKGFAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFS 470

Query: 485 DCDIIREILG 494
           D +     L 
Sbjct: 471 DIEQAERALA 480


>gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
 gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
          Length = 1084

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/510 (31%), Positives = 241/510 (47%), Gaps = 43/510 (8%)

Query: 1    MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
            MKL  L+        +   +  +   +R I  ++ DSR ++ G +F A+ G K DG    
Sbjct: 594  MKLDALLS-------HSAIVKVVGPTDRDITHLTYDSRRVKPGTLFFALKGEKVDG---- 642

Query: 61   PQAIAQGAEAIVVSSAYSLQDF--------SATIRSNTPILVVDNTRKFLSLFASRLYGK 112
                         +   +            +AT R+    +VV N R  ++ FA+  Y  
Sbjct: 643  ------------TAFIDAAIAAGAEAIVTENATFRTRATNIVVANARNTMADFAAAFYQN 690

Query: 113  HPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIY 169
                  I  VTGT+GK++ A  ++ IC+ + L    +G     I         TTP  + 
Sbjct: 691  PARALKIAGVTGTNGKTTTAFLIKHICEAAQLRCGLLGTVRYEIGDRVLPASRTTPESLD 750

Query: 170  LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            + + L  + S G    ++E SSH L Q R+  ++  A  FTNL +DH+DYH+T +AYF A
Sbjct: 751  VHEMLWQMRSAGCKACAMEVSSHALVQARVRDVEFDAAIFTNLTQDHLDYHKTMEAYFEA 810

Query: 230  KMRLFEELL---PKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAI 285
            K R+F EL     K+  AII  DD Y  +++ R           +G    F     V   
Sbjct: 811  KARMFSELAAQKKKQGKAIINLDDRYGAQLVTRFGKAIPITTYGLGVHADF-RASNVRID 869

Query: 286  HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +     +   G+ +    PL G+F VYN+L A     A+GI+    +  L     VPGR
Sbjct: 870  FHGTSYQLDAGGRSYLVRLPLIGQFNVYNSLAAVAAANAMGIEVRNCVLALANATAVPGR 929

Query: 346  FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
             E V    +  R++VDYAHT ++L  ++K  R +   R+IVVFGCGG+RD+ KRP MG +
Sbjct: 930  LEAVPAQRQ-FRVFVDYAHTDDALLNVIKTCRELNPARLIVVFGCGGNRDKTKRPRMGAV 988

Query: 406  ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLV 463
                AD AIVT DNPR E+P  I  +I  G+    +    +R EAI  A+ M   +D+++
Sbjct: 989  VDQHADHAIVTSDNPRKEEPLAIIEDIKPGMRRGNYEVIVDRREAIFKAVAMAQPRDIIL 1048

Query: 464  VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +AGKGHE      +       D  + R+ L
Sbjct: 1049 IAGKGHENYQEFAD-RTMPFDDVAVARQAL 1077


>gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
 gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
          Length = 474

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 226/470 (48%), Gaps = 12/470 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              ++SDSR   AG +F+A  G + DG  FI QAIA GA  ++        + + T+   
Sbjct: 11  FTGMTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVIWEQEGFDWNPAWTVDHQ 70

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V   R   S  A + YG     +  + VTGT+GK+S + ++ Q        +  I
Sbjct: 71  P----VTGLRGQASAIAGQFYGHPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVI 126

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G               TTP PI L   L+     G    ++E SSHGLDQ R++GI    
Sbjct: 127 GTLGNGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGRVNGIDFKV 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TNL RDH+DYH    +Y +AK +LF         AI+  DDA+ + ++      G  
Sbjct: 187 AVLTNLTRDHLDYHGDMASYADAKRKLFH--FGGVQAAILNQDDAFGRALLSELKAKGKH 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VLS G  G  +    +        + +     +      L G F   N L      +A  
Sbjct: 245 VLSYGLSGGDVCGHDLHFDAEGLHMQVHTPQGEAMVHAKLVGRFNASNLLAVLATLLASE 304

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +     +  L  +   PGR + +G   +   + VDYAH+ ++LE  L  +R      +I 
Sbjct: 305 VALEDAVRVLADIRPAPGRMQQLGGGGQ-PLVVVDYAHSPDALEKALNALREQAKANLIC 363

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNR 445
           VFGCGGDRD+GKRP+M ++A  LAD  IVT DNPR+EDP++I AE++ G+ G    + +R
Sbjct: 364 VFGCGGDRDKGKRPLMAEVASRLADKVIVTSDNPRNEDPKEIIAEVVAGLHGPAQVEPDR 423

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +AI  AI      DV+++AGKGHE    V +G +    D ++  ++LG+
Sbjct: 424 EQAITQAIRAAQAGDVVLIAGKGHEDYQEV-SGVRYPFNDAEVAAKVLGV 472


>gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
 gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
          Length = 481

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 253/480 (52%), Gaps = 25/480 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           + ++  I ++  DSR I+   +F A++G   DGH +I +A+  GA+ ++       +D +
Sbjct: 15  KGKDFVIGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAVNSGAKMVIAEK----KDIT 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                +   + VDN RK L + AS  +G   + +  + +TGT+GK++ +  +  + +   
Sbjct: 71  VA-DKDVTYIFVDNLRKHLGVIASNFFGWPQKKLKIIGITGTNGKTTSSYILDSMLE--- 126

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++ +IG     I     +   TTP  + L K L     +GV +  +E SSH L+  R+D
Sbjct: 127 -NTSRIGTIGYKILDEEIEAPNTTPESLDLVKMLDKSLKKGVEYFIMEVSSHALEIGRVD 185

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++  +  FTNL +DH+DYH+  + YFNAK +LF  L  K++ A +  DD+Y + +    
Sbjct: 186 MLEFDSVMFTNLTQDHLDYHENMENYFNAKFKLFSMLRNKDAAA-VNIDDSYGERIYNSN 244

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +     +    +   +  K     +   + ++  +G ++ F   L G++ +YN L   G
Sbjct: 245 KSYKSYSI---IKDSDLKGKIEEYHNGGMKASVIFQGAEYFFDTKLVGDYNLYNLLGCIG 301

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + + +G D   ++E ++++  VPGRFE V    +  R+ VDYAHT N LE IL+ +R IT
Sbjct: 302 VLLNLGFDIRDIIERVKRVGYVPGRFELVN-EGQDFRVIVDYAHTDNGLENILETVRKIT 360

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
             R+I +FG GGDRD  KRP M + A   +D  I+T DNPR+EDP +I  ++  G+    
Sbjct: 361 EKRVITIFGAGGDRDNTKRPKMARAAAKYSDFVIITSDNPRTEDPAEITRQVEKGLTDID 420

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                +    +R +AIR  IEM +  D L++AGKGHE   I+   EK    D +  R+ L
Sbjct: 421 FPKDKYTVIVDREQAIRYGIEMSDANDSLLIAGKGHEDYQILGR-EKIHFDDREQARKYL 479


>gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
 gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
          Length = 514

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 233/480 (48%), Gaps = 19/480 (3%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF- 82
              +R I  V +DSR + AG +F+A+ G + +G  F  QAI QGA A++   +       
Sbjct: 24  AAADRPIRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQGAVAVLSEQSIEEPSLL 83

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRS 140
            +       +L + +  + +S  ++R  G    N+    VTGT GK+SVA F+ Q     
Sbjct: 84  ESASAHQVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTDGKTSVAHFLAQALTAL 143

Query: 141 GLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                 +G   + +       + TTP  + L +  S    QG+ HV++E SSHGLDQ R+
Sbjct: 144 NPPVALVGTLGSGNLDQLHKTQNTTPGAVELQQLFSDFREQGIRHVAMEVSSHGLDQGRV 203

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +G+       TNLGRDH+DYH++   Y +AK +LF         +++  DD +   +   
Sbjct: 204 NGVAFDLAVLTNLGRDHLDYHRSMADYADAKRQLF--YKSGLKASVLNCDDDFGCMLALE 261

Query: 260 AHNAGCRVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                  V   G+ G         +    +    +  +  +S  G+ +     L G F  
Sbjct: 262 LEER-LPVYGYGFDGDMSPQMTARVRGHNLQLTVDGLRFDVSSGGQRYTVDVALMGRFNA 320

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L      +A+G+     +E + +L  VPGR E +     G    VDYAHT  +LE  
Sbjct: 321 SNVLAVITSLLALGVPLPEAVEVVSRLQPVPGRMECLKLP-NGAVAVVDYAHTPQALEQT 379

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L ++R  + GR+  VFGCGGDRD+GKRP+MG+ A   +D   +TDDNPRSE PE I  +I
Sbjct: 380 LSSLREHSGGRLFTVFGCGGDRDKGKRPLMGRAAERFSDALWLTDDNPRSEKPEAIIDDI 439

Query: 433 IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G+          +R  AI+ A+E     DV+++AGKGHE+  +V   E     D +++
Sbjct: 440 CEGLDAPQLAHRIHSREAAIQAALESAAPGDVVLIAGKGHESEQVV-GQEVIAFNDSEVV 498


>gi|56412395|ref|YP_149470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197361331|ref|YP_002140966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|81359648|sp|Q5PDH1|MURE_SALPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56126652|gb|AAV76158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197092806|emb|CAR58232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 495

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/495 (34%), Positives = 250/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +V +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IVEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|238918673|ref|YP_002932187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868241|gb|ACR67952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Edwardsiella ictaluri 93-146]
          Length = 469

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/472 (34%), Positives = 235/472 (49%), Gaps = 14/472 (2%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR   AG +FVA+VG+  DG  FIPQAIAQG  A++  +    +D S       P++ 
Sbjct: 1   MDSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVY 60

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++   + LS  A R YG+      ++ VTGT+GK++    + Q  Q  G +   +G    
Sbjct: 61  LNRLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGN 120

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +      +  TT S + +   L  L+  G T V++E SSHGL Q+R+  +   A +FTN
Sbjct: 121 GLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAASAFTN 180

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-- 269
           L RDH+DYH   + Y  AK RLF          I+ ADD      + +  +A    ++  
Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFS--THHSGEKIVNADDEMGLLWLDKLPDAVAVTVTGV 238

Query: 270 --VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G+ G+++    V        +       +      L GEF V N LVA    +A+G 
Sbjct: 239 LPEGWAGRWLAACSVAYHDGGATIAFDSSWGEGTLNSRLMGEFNVSNLLVALATLLALGY 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +     +L  V GR E     ++   + VDYAHT ++LE  L   R    G++  +
Sbjct: 299 PLAALCAASVQLQPVCGRMEVFQAPAK-PTVVVDYAHTPDALEKALLAARLHCQGQLWCL 357

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD GKRP+MG IA   AD  +VTDDNPRSE+P  I  EI+ G+      +    
Sbjct: 358 FGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLAMAIPG 417

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R EA+  A+     QDV++VAGKGHE   +V N     S D   +  +LG++
Sbjct: 418 RAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDYS-DRVTVARLLGVV 468


>gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 533

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/497 (29%), Positives = 241/497 (48%), Gaps = 21/497 (4%)

Query: 7   IYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  +  +LI  L +   + + +R++  + +DSR +  G +F AI G + DG+ +I +A+ 
Sbjct: 38  LNPNVGDLIQGLELRLRKGKLDREVTCLITDSRRVVPGALFFAIGGLRTDGNYYIEEAVD 97

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
           +GA AI+       QD  +    +   + V++ R  L++ A   YG+  E +    VTGT
Sbjct: 98  RGAVAIITE-----QDLGSHFPID--YIQVEDVRMALAVVAREFYGRPDERLGLTGVTGT 150

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++V+  VQ            IG     I      +  TTP  + +   LS +   G 
Sbjct: 151 NGKTTVSMLVQH-LIGGDDKVGLIGTIRYDIGPRTLPSFRTTPESVDVYALLSQMEDGGC 209

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE- 241
               +E SSHG+DQ R+ G+ +    F NL +DHIDYH++ +AY+ AK  LF        
Sbjct: 210 KDAVMEVSSHGVDQKRVYGLDIDVAVFLNLTQDHIDYHKSMEAYYEAKKGLFIGRAGAVP 269

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF 300
             A++  D AY + ++        R L+ G         +KV  + +  +  +   G   
Sbjct: 270 HSAVVNMDCAYGRRLLTELPG-DVRALTFGEHADAQVRAEKVRLLADHTEFELYWPGGQA 328

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             + PL G + V N L A     A G +   +++ +     VPGR E +    +   + V
Sbjct: 329 TVVSPLLGRYNVSNLLAALATGWAKGFEIEHLVKRIPSFRGVPGRMELIHEK-QPYNVLV 387

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++L+     +R IT G++IVVFGCGGDRD+ KR +M K  L+ AD    T DNP
Sbjct: 388 DYAHTDDALKNATGMLREITPGKLIVVFGCGGDRDRSKRSLMLKATLEHADQIFATSDNP 447

Query: 421 RSEDPEKIRAEIIHG----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           RSE  E+I  ++  G    +       +R  AI  A++     D +++AGKGHE+     
Sbjct: 448 RSESVEQIFEDMRLGNETSLDRVEFIEDRKHAISRALDAAQAGDCVLIAGKGHESFQEF- 506

Query: 477 NGEKKMSVDCDIIREIL 493
           +G      D  + RE++
Sbjct: 507 DGSVVPFDDRQVARELI 523


>gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 487

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/503 (29%), Positives = 249/503 (49%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++YK     +       +      +N++  DSR IQ   +FVAI G   DGH +I
Sbjct: 2   MILKDILYKVTINAV-------VGSTSVSVNKIEFDSRQIQVNDVFVAISGTVTDGHRYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            + I  GA  IV             ++ +   + V N+ K L+  A+  Y    E   ++
Sbjct: 55  DRVIDAGATTIVCE------VLPEALKDDVTYIEVANSNKALAYMAANFYEHPSENLKLI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V+S + Q+ +++G     +      + +       TTP  + + + L  +
Sbjct: 109 GVTGTNGKTTVSSLLYQLFKKAGYKVGLLSTVKIMVDTTTYKATHTTPDSLTINRYLKQM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +GV    +E SSHG+ Q R +G++   G FTNL  DH+DYH T   Y + K   F++L
Sbjct: 169 NDEGVEFCFMEVSSHGIHQSRTEGLRFTGGIFTNLSHDHLDYHDTFAEYRDVKKLFFDQL 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK++ A+   DD      +    N   +  +   +    +  ++          + ++ 
Sbjct: 229 -PKDAFALSNMDDKNG---LAMLQNTQAKKYTYALKNYADYRAQILENEFSG---LLLKV 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +    L G F  YN L   G    +G++   +L  + +L  V GRF++  ++ +   
Sbjct: 282 NDSELWTRLIGSFNAYNILAIYGTAELLGLEKDEILRLISELENVSGRFQYFISDEK-IT 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L+ +L+ I  I +    +I V GCGGDRD+ KRP M  IA  L+   I 
Sbjct: 341 AVVDYAHTPDALKNVLETINNIRTKNEELITVVGCGGDRDKTKRPKMAHIASTLSTKVIF 400

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPRSE PE I  ++  G+        +   +R +AI+TA +M + +D++++AGKGHE
Sbjct: 401 TSDNPRSEVPETIIEDMEKGVEPQNFKKTLSITDRKQAIKTACQMADTRDIILIAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  GE+    D   ++E+L
Sbjct: 461 TYQEIK-GERFDFDDYKTVQELL 482


>gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
 gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
          Length = 529

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/520 (32%), Positives = 252/520 (48%), Gaps = 38/520 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+    PE +   +       + +I  +   S  ++ G +FVAI G+  DGH FI
Sbjct: 1   MRLSELLLPVCPESVRSTAAARGVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            QA+A+GA A+V       +D           + V + R  L+L ++  YG     ++  
Sbjct: 61  DQALARGAVAVVAEKEVDARDAVT--------VRVADARNALALLSAVFYGAPSARLVLV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A+ V+ I  ++G     IG  +         N LTTP    L   L  +
Sbjct: 113 GVTGTNGKTTTAALVEHILVKAGKQVGVIGTGNFRYVGRRFKNPLTTPESADLQHILRDM 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
           ++ GVTHV +E SSH L Q R+ G       FTNL +DH+D+H   + Y+  K RLF   
Sbjct: 173 ATAGVTHVVMEVSSHALAQQRVAGCAFDVAIFTNLTQDHLDFHGDMETYWECKKRLFTGT 232

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +  K   ++I  +DA  + +       G        +   I+ K V +  +    T
Sbjct: 233 RSVGVREKHMVSVINCNDARGRGLFDTLPVPGRMGAGF-AEACDIYPKGVTSSPDGLAGT 291

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I        F  PL G + + N L AAG  + +G++ A + E +E    VPGR E V  +
Sbjct: 292 IVTPAGPIPFCSPLAGTYNLENILCAAGAGVVLGVEGAAIQEGIETFAGVPGRLEKVA-D 350

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  ++VDYAHT ++L+ +L  +R I++GR+  VFGCGGDRD+ KRP MG IA  +AD 
Sbjct: 351 RMGRFVFVDYAHTPDALQNVLSALRKISAGRLFCVFGCGGDRDRAKRPKMGGIAATIADR 410

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-------------------FIEKGNRIEAIRTAI 453
            +VT DNPRSEDPE I A+I+ G+ G                   ++ + +R  AIR A+
Sbjct: 411 VVVTSDNPRSEDPEAIIADIVKGMTGLAERVADVAGLAGKSSNGRYLVEPDRRLAIRAAV 470

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 D +++AGKG E   I  +       D       L
Sbjct: 471 SAAAPGDTILIAGKGEENYQIFRDRTID-FDDRQEAAAAL 509


>gi|332762646|gb|EGJ92911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 4343-70]
 gi|333009179|gb|EGK28635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-218]
          Length = 495

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DS    AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSCVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG I
Sbjct: 471 YQIVGNQRLDYS-DRVTVARLLGGI 494


>gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
 gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
          Length = 487

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/490 (31%), Positives = 236/490 (48%), Gaps = 16/490 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+      
Sbjct: 1   MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AK 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 55  GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     ++ 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVVN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +      +     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQYSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A G  + +G     +L  L +L    GR + +G       + VDYAHT +
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLG-GGDKPLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    
Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAA 411

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I  G     +     +R EAI   I      DV+++AGKGHE    + +G +    
Sbjct: 412 IIADIRKGFAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFS 470

Query: 485 DCDIIREILG 494
           D +     L 
Sbjct: 471 DIEQAERALA 480


>gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
 gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
          Length = 505

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 258/524 (49%), Gaps = 50/524 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+        +L+  L+   +   +  +I  +  DSR ++ G +F A+ G K DG  F
Sbjct: 1   MKLR--------QLLACLTAPKVTGDDAAEITSLCYDSRQVRPGALFFALRGVKSDGTEF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           +  A+  GA A+V     ++        +    + V + R+ +SL A+  YG       +
Sbjct: 53  VESAVKGGAVAVVADRPCAV--------AGVTCIEVPDPRRAMSLMAALFYGVPTAGIPL 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    ++ I +++G+ +  +G  S    + +     TTP  + L + L  
Sbjct: 105 VGITGTNGKTTTTYLMEGIMEQAGIPTAVLGTISYRFGATSIPAPNTTPESVDLQQILRD 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  QG     +E SSH L+Q R DG       FTNL RDH+DYH   ++Y+ +K+RLF +
Sbjct: 165 LVDQGAKGAVMEVSSHSLEQRRADGCLFDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTD 224

Query: 237 LLPKES-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290
           LL          A++  DD Y     + A  A   VL+    G   + + +V    +  +
Sbjct: 225 LLAPTGEKPLRRAVVNLDDPYG---ARIAAEAAAPVLTYAAAGPADLTVAEVEFSVHGIR 281

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             ++    + D    L G F +YN L A G  +A+GI    +   +     VPGR E V 
Sbjct: 282 CRLNSPVGEIDIDSDLLGRFNLYNILGAVGAGLALGIPKDAIEAGIAGHKKVPGRLERVP 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N +G  + VDYAHT ++LE +L  I  + + RII +FGCGGDRD+GKRP+MG+IA   +
Sbjct: 342 -NDQGIIVLVDYAHTGDALENVLSTIAELKTDRIITIFGCGGDRDKGKRPVMGEIAARYS 400

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRT 451
           D+AIVT DNPR+E+P+ I  +I  GI                    GF    +R  A+R 
Sbjct: 401 DLAIVTSDNPRTEEPKAILDDIRAGITPLRLKEYSLEELEGGLREKGFATIESRRTAVRA 460

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           AI      D++++AGKGHE   IV   EK    D +     L L
Sbjct: 461 AIMAARPGDIVLLAGKGHEDYQIVGT-EKFHFDDREEAAAALKL 503


>gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 491

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/499 (38%), Positives = 268/499 (53%), Gaps = 19/499 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQW--RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL   +++         +  P      + +++ +++DSR ++   IF AI GN+ DG  
Sbjct: 1   MKLTTALHR---------AGLPTDGCGHDPEVSGITADSRQVRPRMIFAAIAGNRADGRA 51

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI QA+ QGA AI+ +         A    +   +  D+ R  LS+ A+ L    P +++
Sbjct: 52  FITQALQQGACAIISTPDACAAVRQAG--HDIACIATDDPRHALSVMAAALMPAMPGHVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALS 175
           AVTGT+GK+S   FV+QI Q  G ++  IG    IS          LTTP  + +A  L 
Sbjct: 110 AVTGTNGKTSTVEFVRQIWQHQGHAAASIGTLGIISPTVPALSGPSLTTPDGVTMALTLG 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L   GV  +++EASSHGL Q RLDG+ L A  F+NL RDH+DYH    +Y  AK+RLF+
Sbjct: 170 TLHEHGVDDIAIEASSHGLAQRRLDGVPLAAAGFSNLTRDHLDYHGDMDSYRAAKLRLFD 229

Query: 236 ELLPKESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            LLP    A+  AD   A  + +   A   G  +  VG  G  I L +V    + Q + +
Sbjct: 230 TLLPPGGLAVANADMEGATLEALRAIAVKRGLDLRLVGESGDAIRLLRVTPRPDGQVLDV 289

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G   +    LPG +QV N L+AAGL  +     +  +  L  L  V GR E   T  
Sbjct: 290 ECNGTRHEVATRLPGRYQVDNMLLAAGLAASSRDMMSAAINCLPALVGVRGRMEHAVTLP 349

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  +YVDYAHT ++LE +L ++R   SGR++ VFG GGDRD+GKRP+MG +A  LAD+A
Sbjct: 350 NGAAVYVDYAHTPDALERLLLSLRPHASGRLVAVFGAGGDRDRGKRPLMGAVAGRLADMA 409

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           IVTDDNPR+ED   IR E++ G P   + G R +AI   +  L   DV+VVAGKGHE   
Sbjct: 410 IVTDDNPRTEDAAAIRREVMAGAPDASDIGGRRQAIAEGLSRLKAGDVMVVAGKGHEQGQ 469

Query: 474 IVTNGEKKMSVDCDIIREI 492
            V         D  +IRE+
Sbjct: 470 TVGT-TVLPFDDVSVIREL 487


>gi|168243462|ref|ZP_02668394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168820883|ref|ZP_02832883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194449143|ref|YP_002044093.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|238911180|ref|ZP_04655017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|194407447|gb|ACF67666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205337520|gb|EDZ24284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205342491|gb|EDZ29255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084366|emb|CBY94159.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 495

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 CLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|258593043|emb|CBE69354.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [NC10
           bacterium 'Dutch sediment']
          Length = 504

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 255/509 (50%), Gaps = 32/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DLI     +++           + +++E+  DSR ++ G +FV I G + DGH FI
Sbjct: 1   MQLFDLINGTEHQVLRGSV-------DLEVHEIRYDSRQVKPGDLFVCIGGFRRDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A A GA A +V       D +        ++ V NTR+ L+  A R YG    ++  +
Sbjct: 54  QAAWAAGAVAALVER----TDLTEAALQGGTVVKVANTRQSLAAVACRFYGHPSRSLSMV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    V+ + + +G     IG      +  + +   TTP    L   L  +
Sbjct: 110 GVTGTNGKTTTTYLVESVLRCAGHQVGLIGTIGYRCNELELEAARTTPESCDLQALLERM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +      V +E SSH L  HR+DG +     FTNL +DH+D+H T +AY +AK+ +FE L
Sbjct: 170 ARLRADSVVMEVSSHALALHRVDGCEFDVAVFTNLTQDHLDFHGTMEAYRSAKLSMFEGL 229

Query: 238 LPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
                   E  A++  DD  +   +        R  S   +G   + +  V    +  + 
Sbjct: 230 GVGSTKTTEKAAVVNLDDPAADLFLG---ATRVRRYSYSVEGPADLSVADVKMGPDGIRC 286

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +           PL G + + N L AA   + +G D + V + +  LH VPGR E V T
Sbjct: 287 RLQTPWGTTAIRSPLLGRYNLSNILAAAATGLHLGADLSAVADGIAALHHVPGRCERVET 346

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT ++L  +L+  R    GR+IV+FGCGG+RD+GKRP+MG+ AL+LAD
Sbjct: 347 -GQAFSVMVDYAHTPDALRRVLRMARQCCPGRLIVLFGCGGERDRGKRPLMGEAALELAD 405

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++T DNPR EDP +I  EI  G         G++   +R  AIR A+ +  + D++V+
Sbjct: 406 FTVITSDNPRGEDPHQIIEEIETGAKKVWGQGKGYVTILDRGMAIREALSLAGRGDMVVI 465

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHET  I+ +       D  + RE L
Sbjct: 466 AGKGHETYQILRDRTIP-FDDRLVAREAL 493


>gi|16759118|ref|NP_454735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140668|ref|NP_804010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052854|ref|ZP_03345732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426160|ref|ZP_03358910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213621300|ref|ZP_03374083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213647636|ref|ZP_03377689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213852463|ref|ZP_03381995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|289823739|ref|ZP_06543351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|21362697|sp|Q8Z9H3|MURE_SALTI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331979|pir||AH0517 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501408|emb|CAD01280.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29136292|gb|AAO67859.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 495

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 CLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|188026237|ref|ZP_02961399.2| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
 gi|188022181|gb|EDU60221.1| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
          Length = 471

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/474 (32%), Positives = 230/474 (48%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +F+AI G++ DG  +I QAIAQG  A+V  +     +         P+
Sbjct: 1   MTLDSRKAAAGDLFIAIKGHQSDGRHYISQAIAQGVAAVVAEAHGEAAEGEIRYIHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +++    LS  A   Y        ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLNDLNSRLSALAGAFYQHPVEKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +      +  TT S + +   L+ L  Q  T  ++E SSHGL Q R+  +   A  F
Sbjct: 121 GNGLLGQVAPSENTTGSAVDIQVELTQLLKQKATLTAMEVSSHGLVQGRVAALSFDAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH   ++Y  AK  LF     +    II ADD    + ++R   A      
Sbjct: 181 TNLSRDHLDYHGDMESYEAAKWLLFS--THQTKAQIINADDDVGLKWLQRLPQACAVSME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +   +QG ++    V        +  +    +     PL G F V N L+A    + +
Sbjct: 239 QRIPEQWQGPWLQATAVEYHDRGATIQFTSSWGNGTLESPLMGAFNVSNLLLAMATLLTM 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
                 +LE    L  V GR E V +      + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 DYSLEQLLEASSSLSPVCGRME-VFSAPNKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG  A + AD  ++TDDNPRSE+P  I  +I+ GI      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGAAAEEWADKVVITDDNPRSEEPLDIINDIMAGILDSSRVLAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ ++I   N  DV+V+AGKGHE   I+ +     S D   +  +LG++
Sbjct: 418 PGRAEAVTSSIMQANADDVIVIAGKGHEDYQIIGHRRLDYS-DRLTVARLLGVL 470


>gi|267991801|gb|ACY86686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
          Length = 495

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/495 (34%), Positives = 250/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QGVT  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGVTFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 502

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/502 (31%), Positives = 242/502 (48%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L  +   + I              I  + +DSR I+ G +FV + G   DGH + 
Sbjct: 1   MILKSLTERLILKTITG-------SLSVDITNLDTDSREIRPGGMFVCVPGYHVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAI  GA AIV     S       +  N  ++ V +TR+ L + A+  YG   +   ++
Sbjct: 54  EQAIRNGAVAIVAERELS------GLSENVTLITVPDTRRILPILANAFYGDPTQRLKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V +I   +   +  IG     I + A+    TTP  I L +    +
Sbjct: 108 GITGTNGKTTTTHMVDKILNDARRKTGIIGTLYMKIGNHAEKTLNTTPDTIQLMRYFHTM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G  +  +E SSHGLD  R+ G       FTNL  DH+D+H+T ++Y N K  LF +L
Sbjct: 168 ISHGGEYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHKTMESYRNTKELLFAQL 227

Query: 238 LPKE----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
                     A++ ADD  S    KR      ++++ G Q    +    +          
Sbjct: 228 GNSNRDMLKKAVLNADDDASSYYAKR---TSAQIITYGIQNQADVRATHIHHTREGCAFH 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +    + G   +YNAL A   C+  GI    + E L +   V GRF+ + T 
Sbjct: 285 AETPWGSSEVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRESLGQFAGVHGRFQEIQTG 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            R G + VDYAH  + L+  L++ + ITSG++I V GC G+RD+ KRPIM  IA   AD 
Sbjct: 345 RRFG-VVVDYAHNPDGLKATLQSAKAITSGKMICVMGCRGERDRSKRPIMADIASSYADY 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            + T DNP SEDPE+I AE++ G+       +    +R EAI+ A+EM   +D +++ G+
Sbjct: 404 VLFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGR 463

Query: 468 GHETVHIVTNGEKKMSVDCDII 489
           GHET + VT    +   D DI+
Sbjct: 464 GHETRY-VTGSRIESFSDEDIV 484


>gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
 gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
          Length = 487

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/494 (30%), Positives = 252/494 (51%), Gaps = 26/494 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +++  +SI  +       +N +  DSR +  G +FVAI G   DGH +I +AIA GA+
Sbjct: 4   LKDILFGVSITAVSGSTSVMVNSICFDSRIVTMGDVFVAIKGTITDGHEYIEKAIALGAK 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            I+  +         TI  +   + VDN  K L++ AS  Y    +   ++ VTGT+GK+
Sbjct: 64  TIICET------MPVTIVDDVTYVEVDNGNKALAIMASNFYDNPSKNLKLVGVTGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +++S + Q+ +++G     I      +         TTP  + +   L  ++  GV    
Sbjct: 118 TISSLLYQLFKKAGFKVGLISTIKIMVDDTEYKTSHTTPDALTINHHLKLMNDVGVEFCF 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHG+ Q R +G+      FTNL  DH+DYH+T   Y + K  LF+ L PK++  + 
Sbjct: 178 MEVSSHGIHQKRTEGLAFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDNL-PKKAFVLT 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD      +    N   R  +   +    +  ++       Q+ + ++G +      L
Sbjct: 237 NVDDKNG---LVMLQNTKARKYTYALKTYADYKAQILENQFNGQL-LKIDGSE--VWSKL 290

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F  YN L   G    +G++   +L  L +L  V GRF++  +  R     VDYAHT 
Sbjct: 291 IGDFNAYNMLAIYGTAQLLGLEKLEILRLLSELENVDGRFQYFISKER-ITAIVDYAHTP 349

Query: 367 NSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           ++L+ +L  I  + +G   +I V GCGGDRD+ KRP+MG IA +++   I T DNPR+E+
Sbjct: 350 DALKNVLDTINKLRTGNENVITVVGCGGDRDRSKRPVMGHIASEMSTTTIFTSDNPRTEN 409

Query: 425 PEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P++I  EI  G+        +   +R +AI+TA ++ N  D++++AGKGHET   + NG 
Sbjct: 410 PDEILKEIEAGVEVQNVRKTLTIESREQAIKTACQLANSNDIILIAGKGHETYQEI-NGV 468

Query: 480 KKMSVDCDIIREIL 493
           +    D ++++ +L
Sbjct: 469 RAHFDDYEMVQNLL 482


>gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 504

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/504 (33%), Positives = 260/504 (51%), Gaps = 29/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK     Y++  +L++Q           K  E+  DSR I+ G IF+AIVG+++DG  +I
Sbjct: 1   MK----TYRNLSDLLHQSKKL---VANVKFKEIKLDSRKIEKGDIFLAIVGSQKDGRKYI 53

Query: 61  PQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
             AI++GA AI+  S + + +D      +  PI+ V N RK +  F+ +LYG   +   +
Sbjct: 54  NHAISRGASAIIAESNSLTKEDEFIKFLNQIPIVFVKNIRKKIVFFSKKLYGSLNKKMKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALS 175
           + VTGT+GK++V+  V Q+ +  G  S  +G      I      + LTT S   +   L 
Sbjct: 114 IGVTGTNGKTTVSHIVAQLAKLIGQKSAVMGTIGNGLIGEKIYPSELTTLSCFEICSTLK 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + V  V++E SSHGLDQ R   +   +  FTN+ RDH+DYH   + Y  +K +LF 
Sbjct: 174 MFLEKSVKIVAMEVSSHGLDQGRTCSLSFSSAIFTNITRDHLDYHNNIEHYELSKKKLFY 233

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-------HLKKVCAIHNK 288
           E   K     I  DD    + +K   N+    +S+ ++ K         +  K+  ++N+
Sbjct: 234 EHDCKNRVFFI--DDPVGSKWIKDFPNSCA--VSINHKNKLNLLNRPILYATKIEYLYNQ 289

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +  + +  + +      GEF V N ++A    + IG    L++++ +++  V GR + 
Sbjct: 290 TIIRFNSDWGNGEIRTSFLGEFNVANFMLAIASLLMIGYPIHLLIKNSKRVSPVIGRMQL 349

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V   +   R+ +DYAH S+SL+  L +IR    G+I  VFGCGG RD+GKR IMG+IA  
Sbjct: 350 VSHYN--PRVIIDYAHNSDSLKQCLISIRKHFGGKIWCVFGCGGSRDKGKRAIMGRIAEK 407

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVA 465
            +D  I+TDDNPR EDP+KI  EI+ G            R  AIR +I      D +++A
Sbjct: 408 YSDFVIITDDNPRFEDPKKIFKEILRGCTHLESIRYFPERKYAIRYSISRAKPNDTVLIA 467

Query: 466 GKGHETVHIVTNGEKKMSVDCDII 489
           GKGHE   IV +  K +  D  I+
Sbjct: 468 GKGHEEKQIVGD-RKILCSDYQIV 490


>gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
 gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
          Length = 487

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/508 (29%), Positives = 255/508 (50%), Gaps = 41/508 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         +++  + I  +    +  +N +  DSR +    +FVA+ G   DGH +
Sbjct: 1   MKL-------LKDILYGVGIVAVNGTTDTMVNAICFDSRKVGLDDVFVAVKGTLVDGHSY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I  A+  GA AI+  +          + +    + V N    L++ AS  YG   +   +
Sbjct: 54  IDTALNAGANAIICET------MPVNLVNGITYVQVKNGNAALAIMASNFYGTPSKNLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKA 173
           + VTGT+GK++++S + Q+ +++G     +G  STI     D       TTP  I + K+
Sbjct: 108 VGVTGTNGKTTISSLLYQLFKKAGYK---VGLLSTIKIMIDDKEIKATHTTPDAITINKS 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +++ GV    +E SSHG+ Q R++G+      FTNL  DH+DYH+T   Y + K  L
Sbjct: 165 LAEMNNAGVEFCFMEVSSHGIHQKRIEGLVFEGAIFTNLSHDHLDYHKTFAEYRDTKKLL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
           F+ L PK + A+   DD     ++    N   +  +   +       + +    + Q + 
Sbjct: 225 FDGL-PKTAWALTNIDDKNGAVML---QNTKAKKQTYALKTYADFRAQILENQFSGQLLK 280

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I     D +    L G+F  YN L        +G++   +L  L +L  V GRF++   +
Sbjct: 281 ID----DNELWSKLIGDFNAYNMLAIYATAQLLGLEKMEILRLLSELENVDGRFQYY-IS 335

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +     VDYAHT ++L+ +L  I  + +G   +I V GCGGDRD+ KRP+MG IA +++
Sbjct: 336 GKNITAIVDYAHTPDALKNVLNTINALRTGNEDVITVVGCGGDRDKSKRPVMGHIASEMS 395

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              + T DNPR+E P +I  E+  G+        +   NR +AI+TA ++   +D++++A
Sbjct: 396 TKVVFTSDNPRTESPSEILKEVEAGVEAQNTRKVLTIENREQAIKTACQLAQPKDIILIA 455

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHET    TNG +    D  I++++L
Sbjct: 456 GKGHETYQE-TNGVRIDFDDYKIVKQLL 482


>gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7424]
 gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424]
          Length = 496

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/500 (31%), Positives = 244/500 (48%), Gaps = 17/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL++L+ K     +  L I      ++++  +S++S   Q G +F+ + G + DG  F 
Sbjct: 2   IKLRELLTK-----VPSLVIPEHPALDKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI       + +              +  ++   +     +  ++  YG   +   ++
Sbjct: 57  TSAIE---AGAIAAIITPQAGSKYPPTEDVCVIQAADMVSICAEISAAFYGYPAQQMKMI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    +S  ++  +G   T    + Q    TTP    L + L+  
Sbjct: 114 GVTGTNGKTTTTHLIEYFLTQSQFNTALLGTLYTRWQGYQQTALHTTPFATELQEQLAQA 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH L Q R+ G       FTNL +DH+D+H+  + YFNAK  LF   
Sbjct: 174 VKAGSEYAVMEVSSHALAQRRVAGCPFEVAVFTNLTQDHLDFHKDMEDYFNAKALLFSPD 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 AII  DD Y + ++           SV       + K +    N     +    
Sbjct: 234 YLT-GRAIINLDDPYGQRLINSLSGEKVWSYSVNNPDANFYTKDLTYEANGVSGILHTPI 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
            + +F  PL G++ + N L A G  + +G+D   ++E L     VPGR E V  +  +  
Sbjct: 293 GEVNFYSPLVGQYNIANLLAAVGAVVHLGVDLKSIVESLPLFSAVPGRMERVKISDKQDI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP MGKIA +LAD+A+VT
Sbjct: 353 SVIVDYAHTPDSLENLLKAARPFIEGKMICVFGCGGDRDRTKRPKMGKIAAELADLAVVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E+PE+I  +I+ GIP     +   +R EAIRTAI      D +++AGKGHE   
Sbjct: 413 SDNPRTENPEQILEDILAGIPQSVKPVVISDRAEAIRTAIMDAKPGDGVLIAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  RE L
Sbjct: 473 ILGT-EKIHFDDREQAREAL 491


>gi|200389058|ref|ZP_03215670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199606156|gb|EDZ04701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 495

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEAADGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 CLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 496

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/471 (30%), Positives = 231/471 (49%), Gaps = 23/471 (4%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +  ++  +  +  +++DSR ++ G +FV I G   D H FIP A+ +GA A+V       
Sbjct: 8   VQVLEAPDVTVTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVVTQR---- 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
                 + +     VV + R  LS  A R YG       ++ VTGT+GK++ A  V+ I 
Sbjct: 64  ---PWAVPTGIGAAVVPDARLALSALADRFYGHPSRALRMVGVTGTNGKTTTAFLVEAIA 120

Query: 138 QRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +G +   IG    +         +  TTP P  + + L+ +  +G     +E SSH L
Sbjct: 121 RTAGKAMGVIGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVMEVSSHAL 180

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q R D  +     FTNL  +H+DYH   + Y+ AK RLF  L P  + A++  DD Y +
Sbjct: 181 EQRRTDHCRFDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRGLQP-GAAAVVNIDDPYGR 239

Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQV 312
            + +    AG R L+ G+ +G  I  + V       +  +     + D     L G + V
Sbjct: 240 RLAEEIP-AGVRTLTYGFSEGADIRAEDVHLTGPGARYRLITPVGEADVEAPHLFGTYNV 298

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ A G  +A+G      +  L      PGRFE +    +   + VDYAHT +  E +
Sbjct: 299 SNAMAAVGAGLALGFSLQDAVAALGTAKGAPGRFERID-EGQDFTVVVDYAHTPDGFEKL 357

Query: 373 LKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L ++  I     R+I+VFG  G RD  KRP MG+IA +  D+ ++T+++PR+ED  +I  
Sbjct: 358 LSDVARIKEPGSRVIMVFGSAGQRDPSKRPDMGRIAGEYCDVLVLTEEDPRTEDAMEIAR 417

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +I  G+           +R+EAIR AI M    D++++ GKG ET   V +
Sbjct: 418 QIASGVARDEVEIHLIEDRVEAIREAIRMARTGDIVLITGKGQETELEVQH 468


>gi|330012012|ref|ZP_08307229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
 gi|328534001|gb|EGF60653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
          Length = 471

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/474 (33%), Positives = 239/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D         P+
Sbjct: 1   MTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +   ++ VTGT+GK++    + Q  +  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   LS L  QG T  ++E SSHGL QHR+  ++  A  F
Sbjct: 121 GNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +         +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R   SG++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKALQAARLHCSGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+    +    
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N     S D   +  +LG +
Sbjct: 418 EGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLDYS-DRVTVARLLGAV 470


>gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum SS9]
 gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Photobacterium profundum SS9]
          Length = 506

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/489 (31%), Positives = 242/489 (49%), Gaps = 15/489 (3%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S +  +WRE  +  ++ DSR I+A  +FVA+ G+  DG  FIP AI  GA A++  +   
Sbjct: 21  SDWQEKWREHSVVNMTIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNI 80

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            +      +    I+      ++LS  A+R Y +      +LAVTGT+GK++++  + Q 
Sbjct: 81  AKHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW 140

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G ++  +G T   + +       TT + I +   L  L  QG    ++E SSHGL 
Sbjct: 141 ANLIGYNAGVMGTTGNGLLNSLTPAVNTTGNAIEIPHVLHDLVDQGADFAAMEISSHGLV 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++ +A  FTNL RDH+DYH     Y +AK  LF E   +    +I ADD     
Sbjct: 201 QGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTE--HQAGIPVINADDDIGFT 258

Query: 256 VMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +    +A   V     L   YQG+ + L  V        ++         F  PL G F
Sbjct: 259 WLADLPHAVAVVTDKARLGEHYQGQALWLTDVMYSTQGVNISFDSSWGAGQFTAPLVGSF 318

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L+A    +A+G     ++     L  V GR E   +  +   + VDYAHT ++LE
Sbjct: 319 NVSNLLLALATLLALGHSIDKLIATAPHLTAVIGRMEVFQSPDK-PMVVVDYAHTPDALE 377

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+ +R    G++  +FGCGGDRD GKRP+M +I+  LAD  I+TDDNPR+E P  I +
Sbjct: 378 KALQALRVHCQGKLWCIFGCGGDRDTGKRPMMAEISERLADRIIITDDNPRTEAPAAIVS 437

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +++ G+          +R  A   AIE     D++++AGKGHE   ++ +     S D +
Sbjct: 438 DMLQGLALPQQAQVIHDRKLACTYAIEHAQVNDIILLAGKGHEDYQVLADRTIHYS-DRE 496

Query: 488 IIREILGLI 496
            ++ + G I
Sbjct: 497 TVQALFGEI 505


>gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 483

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 248/473 (52%), Gaps = 21/473 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            +E +   +  DSR I+ G IFVA+ G   DGH +I QA+  GA+ ++VS          
Sbjct: 17  AKEEEYTGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKKVEAAFP-- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LS 143
                   + + + RK L + AS  Y   P+  L + G +G +   +    I    G   
Sbjct: 75  -----VKYIWIKDLRKKLGVLASNFY-NWPQKKLKIIGITGTNGKTTTTYLIESILGSNK 128

Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +IG     I     +   TTP  + + K       +G+ ++ +E SSH LD  R+D +
Sbjct: 129 TARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALDLGRVDML 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261
           +     FTNL  DH+D+H+T + YF AK +LF  +    E   +I  DD Y K +     
Sbjct: 189 EFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYGKRLSSEFG 248

Query: 262 NAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                 +S G   +     + V    + Q+V + ++         + G + VYN L A  
Sbjct: 249 G-----ISYGMHNEGRVRGRIVEFHGDGQEVELHIDAFSTRTKLAILGRYNVYNVLGAIS 303

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + + +GI+  +VLE +++L   PGR+E V    +   + VDY+HTS++LE ILK+I  + 
Sbjct: 304 IALLLGIEKEIVLERIKELKGAPGRYELVNC-GQNFTVIVDYSHTSDALENILKSINELK 362

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            G++I VFGCGGDRD  KRP+MG+IA  L+DIAIVT DNPR+EDP KI  +++ G+ G  
Sbjct: 363 KGKVITVFGCGGDRDASKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEGMKGKN 422

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            I + +R  AI  A+E+  ++D++++AGKGHET  I+   +K    D +I R 
Sbjct: 423 HIVEEDRDHAISKAVELAEEKDIILIAGKGHETYQILGR-KKIHFDDREIARR 474


>gi|16763513|ref|NP_459128.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989996|ref|ZP_02571096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168234887|ref|ZP_02659945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737109|ref|YP_002113141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262729|ref|ZP_03162803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|204926802|ref|ZP_03218004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|21362703|sp|Q8ZRU7|MURE_SALTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16418622|gb|AAL19087.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194712611|gb|ACF91832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197240984|gb|EDY23604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197291875|gb|EDY31225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323467|gb|EDZ08662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205331379|gb|EDZ18143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245356|emb|CBG23145.1| Meso-diaminopimelate-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|301156751|emb|CBW16226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911092|dbj|BAJ35066.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222302|gb|EFX47374.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323128443|gb|ADX15873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|332987076|gb|AEF06059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 495

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|300722054|ref|YP_003711334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628551|emb|CBJ89123.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 495

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/496 (33%), Positives = 244/496 (49%), Gaps = 16/496 (3%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+++ +   E  + E++ DSR   AG +FVA+ G++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLALWGIDIPELPLREMTLDSRKAAAGDLFVAVQGHQTDGRKYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT---GTSGKSS 128
           +  +       +       P++ +D+    LS  A   Y +HP N L +    GT+GK++
Sbjct: 64  IAEAKGKAGHGTIQKVHGVPVIYLDDLNNKLSKLAGEFY-QHPGNKLKLVGVTGTNGKTT 122

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               + Q  Q  G +S  +G     +      +  TT S + +   L  L +Q  T  ++
Sbjct: 123 TTQLLAQWSQGFGETSAVMGTVGNGLLGMVVPSENTTGSAVDIQLDLQQLVNQKATFAAM 182

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL Q R+  +   A  FTNL RDH+DYH     Y NAK  LF     K+    I 
Sbjct: 183 EVSSHGLIQGRVAALPFQAVVFTNLSRDHLDYHGDMDHYENAKWMLFSNHDVKQKI--IN 240

Query: 248 ADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ADDA  ++ + R   A        L   +QG+++   +V        +  +         
Sbjct: 241 ADDAVGQKWLSRLPEAVAVTMENCLPENWQGRWLLANEVHYHDKGASIAFTSCWGSGTLN 300

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G F V N L+A    +++      +L     L  V GR E      R   + VDYA
Sbjct: 301 SPLMGAFNVSNLLLALATLLSLEYPLEKLLATASCLEPVCGRMEVFAAEGR-PTVVVDYA 359

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L   R    G++  VFGCGGDRD+GKRP+MG +A   AD  IVTDDNPRSE
Sbjct: 360 HTPDALEKALSAARLHCKGQLWCVFGCGGDRDKGKRPLMGGVAELGADRVIVTDDNPRSE 419

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +P  I A+I+ G       +    R+EA+ +A+    + DV++VAGKGHE   +V N   
Sbjct: 420 EPHSIVADILKGFVDPGRAMTIHGRVEAVTSAVMQATEDDVILVAGKGHEDYQLVGNRRL 479

Query: 481 KMSVDCDIIREILGLI 496
             S D   +  +LG+I
Sbjct: 480 DYS-DRLTVARLLGVI 494


>gi|167550682|ref|ZP_02344439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168262192|ref|ZP_02684165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324307|gb|EDZ12146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205348805|gb|EDZ35436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 495

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|311280935|ref|YP_003943166.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
 gi|308750130|gb|ADO49882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
          Length = 495

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 164/495 (33%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   +G +FVA++G++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVPNAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +      ++ VTGT+GK++ 
Sbjct: 64  IAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSGRLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   LS L+ QG T  ++E
Sbjct: 124 TQLLAQWAQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLSGLAGQGATLAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+         AII A
Sbjct: 184 VSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIINA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++    V    +   +  +    + +   
Sbjct: 242 DDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFASSWGNGEIDS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G   A +L    +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLAGLLSTAARLQPVCGRMEVFAAPGK-PTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+ +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R EA+  AI    + DV++VAGKGHE   IV N    
Sbjct: 421 PRAIITDILAGMLDAGHAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHEDYQIVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG++
Sbjct: 481 YS-DRVTAARLLGVV 494


>gi|197251914|ref|YP_002145109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215617|gb|ACH53014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 495

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
          Length = 952

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 238/485 (49%), Gaps = 29/485 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR I+ G +FVA  G   DG L+I +A+A GA A++  +  S  D       +TP
Sbjct: 30  HLKLDSRDIEPGDVFVACPGLSSDGRLYIDKALALGASAVLFEAPGS--DALQAAAGSTP 87

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V   R  L   A   YG+    +  +AVTGT+GK+S   ++     R+      IG 
Sbjct: 88  MLPVTGLRALLGELADTWYGRPSAALAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGT 147

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +          LTTP  + + + L+ +   G   V++EASS G++Q RLDG+++   
Sbjct: 148 LGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAQAVAMEASSIGIEQGRLDGVRVALA 207

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL RDH+DYH T + Y  AK RLF    P  + A++ ADD   + ++          
Sbjct: 208 AFTNLTRDHLDYHGTMERYEAAKARLF--NWPGLTAAVVNADDEAGRRLLATLPTGMA-A 264

Query: 268 LSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +             +  + + A    Q  T+     +   +  L G   V N L+ AG+ 
Sbjct: 265 MGYSLSDSPDIPAAMRARDLQATSQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVL 324

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSNSLEMILK 374
             +G+  A +   L     V GR + V         +  RG  + VDYAHT ++L   L 
Sbjct: 325 YKLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQSSAGRGALVVVDYAHTPDALSRALT 384

Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +R +    SGR+I +FGCGG+RD GKRP MG+IA  LAD  +V+ DNPR+E P+ I  +
Sbjct: 385 ALRAVAVARSGRLICLFGCGGERDPGKRPEMGRIAAQLADHVVVSSDNPRTESPQDIIDQ 444

Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I+ GIP       + +R  AI   I   +  DV+++AGKGHET   +  G+K    D + 
Sbjct: 445 ILAGIPPAANVDVQVDRARAIMQTIWSASPDDVVLLAGKGHETYQDI-GGDKLPFDDREW 503

Query: 489 IREIL 493
            R  L
Sbjct: 504 ARLAL 508



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 148/391 (37%), Gaps = 24/391 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ VS+D+R I  G +FVA+VG   D H ++ QA  +G        A +     A   S
Sbjct: 512 QVSGVSTDTRRIGPGELFVALVGENFDAHNYLDQAEGRG--------ACAAVVAHAVSDS 563

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LV+ +TR  L    +    +    ++AVTG++GK++    +  +         + G
Sbjct: 564 KLPQLVLGDTRIALMRIGAAWRAQFTLPVVAVTGSNGKTTTKEMISAMLAEW---QGESG 620

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +T  +   D  +           L   +        +  +  G               
Sbjct: 621 RLATAGNLNNDIGVP-------LTLLRLRAEHRAAVFELGMNHPGEIAQLAAMAAPTVTL 673

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN  R+H ++  T +A  +        L P +  A+   D+ Y       A     RVL
Sbjct: 674 VTNAQREHQEFMHTVEAVAHENGAAIAAL-PDDGVAVYPGDEPYCAIWDALAEPR--RVL 730

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G Q G  ++ +++ A  +  +  +       D   P+PG   + NAL A    IA G+
Sbjct: 731 RFGLQPGLDVYAEQILADVDSTRCRVVTPVGVADLALPVPGLHNLRNALAAIASAIASGV 790

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                +  L +   V GR +    +     I   Y    +S+ + +  +  I   R++V+
Sbjct: 791 PLDCAVRALSRFAPVAGRMQHKKMSDGTLLIDDTYNANPDSVRVAIDVLARIAGTRVLVL 850

Query: 388 FGCGGDRDQGK--RPIMGKIALDLADIAIVT 416
              G   D G      +G  A +    A++T
Sbjct: 851 GDMGEIGDNGPALHAEVGNYAREQGLDALIT 881


>gi|161612467|ref|YP_001586432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168464325|ref|ZP_02698228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|198245705|ref|YP_002214075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351462|ref|YP_002225263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207855637|ref|YP_002242288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|161361831|gb|ABX65599.1| hypothetical protein SPAB_00157 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195633022|gb|EDX51476.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197940221|gb|ACH77554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271243|emb|CAR36031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206707440|emb|CAR31713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626489|gb|EGE32832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 495

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/495 (34%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    D +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           reducens MI-1]
 gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfotomaculum reducens MI-1]
          Length = 486

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 248/495 (50%), Gaps = 26/495 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+  + +  +    E  I  +  DSR    G IFVA+ G + DGH +I  A+A    
Sbjct: 3   LKELLQAIPVITIIGNPEIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYIENAVA---- 58

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
                    + +    + +    + V ++RK L+L A + YG   + +  + VTGT+GK+
Sbjct: 59  ---AGVTAVVYETEIVLPTGVTGVQVSDSRKALALMADQFYGHPSKKLSMVGVTGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +  I +++ +    IG     I   A     TTP  + L K L+ +  +GV  V+
Sbjct: 116 TTTHLIAAIWRKARVKPGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQMLDEGVKGVA 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L  +R+ G+      FTN+ +DH+D+H T + Y  AK +LF         AII
Sbjct: 176 MEVSSHALALNRVAGVNYDVAVFTNITQDHLDFHNTMEEYLAAKAKLFT---TDIQYAII 232

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            ADD  ++E+ K +     +V + G  Q   I  K +           S    +      
Sbjct: 233 NADDPAAEELKKISRG---KVYTYGIDQAADIRAKDIQVTARGVSFMASGPWGNHQLNLK 289

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F VYNAL A    +A+G  S  V+  LE +  V GRFE +    +   + VDYAHT
Sbjct: 290 LTGRFNVYNALAAYTTGMALGFGSDTVVSALEDVPGVAGRFELLD-KGQNFAVVVDYAHT 348

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R IT GR+I VFGCGGDRD+ KRPIMG+IA   +D+ +VT DNPR+E+P
Sbjct: 349 PDGLENILTTARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDVPVVTSDNPRTEEP 408

Query: 426 EKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           +KI  +++ G+        ++   +R EAI  AIE+  + DV+V+AGKGHE   I+    
Sbjct: 409 QKIIQDVVEGVNRVIAPEDYLVLVDRREAINKAIELAQEGDVVVIAGKGHEDYQIIGT-T 467

Query: 480 KKMSVDCDIIREILG 494
           K    D     + L 
Sbjct: 468 KYSFDDRKEAAKALA 482


>gi|62178690|ref|YP_215107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75484869|sp|Q57TD5|MURE_SALCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62126323|gb|AAX64026.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713143|gb|EFZ04714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 495

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/495 (34%), Positives = 250/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ ++   + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEATDGEIREMHGVPVVYLNQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    D +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTNLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRTEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|33593958|ref|NP_881602.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella pertussis Tohama I]
 gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella pertussis Tohama I]
 gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS]
          Length = 945

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 240/480 (50%), Gaps = 26/480 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++  DSR I+ G +FVA  G   DG  F+ QA+A+GA AI+  +  +         +   
Sbjct: 31  DLRLDSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYETEGA-----PVAPAGAQ 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V   R  L   A   YG+  +++  +A+TGT+GK+S   ++ Q+  R G     IG 
Sbjct: 86  ALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT 145

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +     +    LTTP  + + + L+ + + G   V++EASS G++Q RLD I++   
Sbjct: 146 LGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVA 205

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T Q Y  AK  LF+   P    A++ ADD   + ++     A    
Sbjct: 206 GFTNLTRDHLDYHGTMQRYEQAKAALFQ--WPDLQAAVVNADDPAGERLLASLPAALKTG 263

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+      +H + + A  + Q  T+++   +   +  L G+  + N L+ AG    +G 
Sbjct: 264 YSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSKLGW 323

Query: 328 DSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               +   L  +  V GR + V           ++G  + VDYAHT ++L   L  +R +
Sbjct: 324 PLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPV 383

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ VFGCGG+RD GKRP MG+IA++ AD  +VT DNPRSE P+ I  +I+ GI
Sbjct: 384 AQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGI 443

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P       + +R  AI   +      DV+++AGKGHET   +  G K    D    R  L
Sbjct: 444 PAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDI-GGRKLPFDDRQWARLAL 502



 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 149/388 (38%), Gaps = 24/388 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS+D+R I  G +FVA+ G   DGH ++PQA + GA A VV+   +            P
Sbjct: 509 AVSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA--------DVALP 560

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            LV+ +T   L    +         ++AVTG++GK++    +  I  +        G  +
Sbjct: 561 QLVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQW---QGDDGRLA 617

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F  +  +        A+  + +   G+ H        G  +             TN
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHP-------GEIERLAAMAAPTVALVTN 670

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             R+H ++  T +A  +    +    LP++  A+   D+ Y+    K A     RVL  G
Sbjct: 671 AQREHQEFMHTVEAVAHENGAVI-GALPEDGVAVYPGDEPYAAIWDKLAGAR--RVLRFG 727

Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            Q G  ++ ++V    +  Q  +           P+PG   + NAL A    +A G    
Sbjct: 728 LQPGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLH 787

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             +  L     V GR +    +     I   Y    +S    +  +  + + R +V+   
Sbjct: 788 TCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDM 847

Query: 391 GGDRDQG--KRPIMGKIALDLADIAIVT 416
           G   D G      +G  A +    A++T
Sbjct: 848 GEVGDNGPAMHREVGDYAREHGIDALIT 875


>gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 489

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/504 (31%), Positives = 252/504 (50%), Gaps = 33/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+DL++      ++  +          I  +  DSR   A   FVAI G + DGH F
Sbjct: 1   MKQLKDLLFGVSLHAVSGSTAVG-------IESIRFDSRETGASDAFVAIRGTEADGHRF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  A+  G  A++        +    +      + V +T+  L++ AS  YG    N+  
Sbjct: 54  IDGAVKNGVRAVICE------ELPQDLADGVTYVEVADTQLALAVMASNYYGNPSANLRL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V++ + Q+ +++G     I      +       RLTTP  + + K LS 
Sbjct: 108 VGVTGTNGKTTVSTLLYQLFKKAGYKVGLISTIKIMVDDQEFPTRLTTPDSLTINKYLSR 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  GV    +E SSHG+ Q R +G+    G FTNL  DH+DYH+    Y + K +LF+ 
Sbjct: 168 MNEAGVEFCFMEVSSHGIAQRRTEGLVFEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDG 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK + A+  ADD     ++    N   R L+   +       ++       Q+   ++
Sbjct: 228 L-PKSAFALTNADDKNGLFMI---QNTRARKLTYALRSYADFRAQILEQQLDGQL---LK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +D +    L G+F  YN L        +G+    +L+ L  L  V GRF++  +  R  
Sbjct: 281 IQDNEVWTKLIGQFNAYNLLAIYATASLLGLGQLEILQLLSGLQTVDGRFQYFVSKQR-I 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L  I  + +G   +I V GCGG+RD+ KRP+MG IA D+++ AI
Sbjct: 340 TAIVDYAHTPDALKNVLVTINALRTGNESVITVVGCGGERDKSKRPVMGHIASDMSETAI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR E P  I AE+  G+        +   +R +AIRTA +M    D++++AGKGH
Sbjct: 400 FTSDNPRREPPRDIIAEMEAGVEPQNVRKVLVIEDREQAIRTACKMAGGGDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   +  G ++   D  ++ E+L
Sbjct: 460 ETYQEIA-GVRRDFDDYKLVSEVL 482


>gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2]
          Length = 485

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/486 (31%), Positives = 236/486 (48%), Gaps = 16/486 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +NQL  FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+         +
Sbjct: 3   LNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAA 56

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+SV+  
Sbjct: 57  VAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQL 116

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++E SS
Sbjct: 117 VAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSS 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I  DD 
Sbjct: 177 HGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVINLDDD 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + + +     ++     S+     F++ ++        +  +     +     PL G F 
Sbjct: 235 FGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFN 294

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +G     +L  L +L    GR + +G       + VDYAHT ++LE 
Sbjct: 295 LSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLG-GGDKPLVVVDYAHTPDALEK 353

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    I A+
Sbjct: 354 VLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIAD 413

Query: 432 IIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G     +     +R EAI   I      DV+++AGKGHE    + +G +    D + 
Sbjct: 414 IRKGFAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQ 472

Query: 489 IREILG 494
               L 
Sbjct: 473 AERALA 478


>gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 495

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/507 (29%), Positives = 241/507 (47%), Gaps = 26/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+     ++       P    E  I  +S +S   Q G +F+AI G+K+DG  +I
Sbjct: 1   MTLRELLAPWIKQI-------PF---ECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P AIA+G  AI+  +    +        + PI+  +   K LS  A   Y +      ++
Sbjct: 51  PSAIAKGVAAILAEAKGQTKHGEIHKLHDVPIIYFNQLNKMLSAIAGHFYQQPSRFLRLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++  +       G +S  +G     I      +  TT S I + + L  +
Sbjct: 111 GITGTNGKTTISYLLANWLSLLGETSAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQV 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSHGL Q R+  +   A  F+NL +DH+DYH     Y  AK +LF EL
Sbjct: 171 CDQGVKFSIIEVSSHGLVQDRVSNLNFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSEL 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTI 293
               S  II  DD   K  +     A        +   + G ++  +K+    +   +  
Sbjct: 231 --NVSKRIINVDDTVGKNWLVHLPQAVAVTANNSIPHNWPGYWLCARKIIHHTSGVNINF 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +      +    L GEF V N L++    + +G     +++   KL  + GR E V +  
Sbjct: 289 NSYWGSGEIYSNLIGEFNVSNILLSLATLLVLGYSLKNLVKTSRKLQAICGRME-VFSAH 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT ++L   L  ++    G+I  +FGCGG+RD+ KRPIMG IA + AD  
Sbjct: 348 GWPVVIVDYAHTPDALAKALLAVKMRCQGKIWCIFGCGGNRDKSKRPIMGAIAEEYADYI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I+T+DNPR E+P+ I  +I  G              R  AI+ AI   + QD++++AGKG
Sbjct: 408 IITNDNPRWEEPQDIIEDIKCGFINGNHTNKTVILCRSLAIQHAIIHASPQDIILIAGKG 467

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495
           HE   I+  G++    D  ++  +L L
Sbjct: 468 HENYQIIK-GKQFYYSDRIVVSNMLKL 493


>gi|194443335|ref|YP_002039355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194401998|gb|ACF62220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 495

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/495 (34%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    D +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGDGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter lovleyi SZ]
 gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ]
          Length = 506

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/512 (33%), Positives = 261/512 (50%), Gaps = 41/512 (8%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L++++ +       +  ++ ++ DSR + AG +F A+ G+K DGH FI Q       
Sbjct: 3   LEQLLHEVPLQATHGNLDVTVSALTCDSREVTAGTLFFALHGSKVDGHRFISQ------A 56

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
               ++A  L+D S       P L V N R+ ++L A+R +G    ++  + +TGT+GK+
Sbjct: 57  VTAGAAAVVLEDASYA-PEQVPWLQVTNGRQAMALMAARFFGNPTRDLPLIGITGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  ++ I   +GL    +G  S    +   +   TTP    L      L+  G     
Sbjct: 116 TTSYLLEGILTAAGLPPAVLGTISYRFGTTCIEASHTTPESTELQGIFRQLADAGAQAFV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---- 242
           +E SSH L+Q R+DG     G FTNL RDH+DYH T QAY +AK RLF ELL  +     
Sbjct: 176 MEVSSHSLEQRRVDGSVFDIGVFTNLTRDHLDYHGTMQAYGSAKQRLFSELLRPDDRTPL 235

Query: 243 -PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             A+I ADD  ++E ++ A    C V+  G   G  + +++  +  N     +     + 
Sbjct: 236 RHAVINADDPAAEEFIRAAA---CPVIRYGLAPGSEVTVRETTSSVNGISAILVTPQGEQ 292

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   L G F + N L AA   +A+G+    +++ +E+   VPGR E V  N  G    V
Sbjct: 293 PFHSRLLGGFNLSNILAAAAAGVALGLPLQAIIQGIEQHTTVPGRLERV-ENRAGVTCLV 351

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE +L  ++ +   RII VFGCGGDRD GKRPIMG+IA   +D+A+VT DNP
Sbjct: 352 DYAHTGDALENVLSTLKDLAGARIITVFGCGGDRDNGKRPIMGRIAAGYSDLAVVTSDNP 411

Query: 421 RSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAIEMLNKQDV 461
           R+EDP +I  +I  GI                    GF+   NR EAIR A+ +    D+
Sbjct: 412 RTEDPHEILRQIRAGILPLGLREYRPDELTAPPEDKGFVMLENRREAIRLAVRLARPGDI 471

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           L++AGKGHE   I+    K+   D +      
Sbjct: 472 LLLAGKGHEDYQII-GQTKQHFDDREEAANAF 502


>gi|168230402|ref|ZP_02655460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194469969|ref|ZP_03075953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456333|gb|EDX45172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205335121|gb|EDZ21885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 495

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 168/495 (33%), Positives = 249/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINSNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGGIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 487

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/500 (32%), Positives = 252/500 (50%), Gaps = 28/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ+L+     E I       +   +  I ++  DSR +    +F+ I G K  G L+I
Sbjct: 1   MYLQELLKGIQVEKI-------IGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENIL 118
            +AI +GA AI+     +++         T  + V+N+RK L+  ASR Y        ++
Sbjct: 54  NEAIQRGAVAILSEKEIAIE--------GTTTIKVENSRKALAAVASRFYKFPTNTLKLV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+   V+ I     ++   IG  S  I +   +   TTP  + L K L+ +
Sbjct: 106 GVTGTNGKTSITYMVKSILGYYNINVGLIGTISNWIGNKEIEAVRTTPESLELQKILNEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q V    +E SSH L+  R+D  K   G FTNL  +H+D+H+    Y NAK +LF + 
Sbjct: 166 VEQKVDTCVMEVSSHALELGRVDHTKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLFYKT 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                  II  DD + K + +        +++ G  Q   ++   +          + + 
Sbjct: 226 TLCN---IINVDDIHGKMIAEELKEEQIPLITFGMNQQADVYATDLKINLKGVSFQLHMG 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +F   +PG F VYNA+ +  +C  +G+    +   LE +  VPGRFE V    R  
Sbjct: 283 QDSKEFHVKIPGLFTVYNAMPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEIQRN- 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT ++LE IL + R     RII VFGCGGDRD+ KR IMG+I+   +D +I+T
Sbjct: 342 SVIIDYAHTPDALENILISTRKFAPKRIITVFGCGGDRDKTKRRIMGEISGKYSDYSIIT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+E+P KI   I  GI    ++     +R  AI  A+++  ++D++++AGKGHE  
Sbjct: 402 SDNPRTEEPLKIIEMIEDGIKQVTDQYKIMIDRRCAIEYAMKIAEEKDIIILAGKGHEKT 461

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            ++ N E     D ++  EI
Sbjct: 462 QVIGN-EVFYFDDREVALEI 480


>gi|295098589|emb|CBK87679.1| UDP-N-acetylmuramyl-tripeptide synthetases [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 471

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/474 (33%), Positives = 243/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +   ++ VTGT+GK++    + Q  Q  G +   +G  
Sbjct: 61  IYLSQLNERLSALAGRFYNEPSDQLKLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + + + L+ L+ QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVSPTENTTGSAVDVQRVLAGLAEQGATFAAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  +++  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHHGQAIINADDEVGRRWLEKLPDAVAVSME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++   +G+++   +V    +   +  +    + +    L G F V N L+A    +A+
Sbjct: 239 DRINPNCRGRWLKAVEVNYHDSGATIRFASTWGEGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+  E+L  V GR E      +   + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPMADLLKTSERLQPVCGRMEVFSAPGK-PTVVVDYAHTPDALEKALEAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRVIINDILAGMLDAGRARVV 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI    + DV+++AGKGHE   IV N     S D      +LG++
Sbjct: 418 EGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGNRRLDYS-DRVTAARLLGVV 470


>gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
 gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
          Length = 492

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/465 (34%), Positives = 236/465 (50%), Gaps = 13/465 (2%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            ++ DSR +  G IFVA+ G + DG  +I QA+AQGA  ++  +  +  + S    S++ 
Sbjct: 29  HMTLDSRKVGEGDIFVALPGVQRDGRDYIKQALAQGAALVLAEA--NDFNISTDADSSSR 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           I+ V +    L   A   YG   +   ++AVTGT+GK+SV  FV Q+ +  G+ +  +G 
Sbjct: 87  IMRVPDLSAELPSLAKDFYGDPSQEMALVAVTGTNGKTSVVEFVGQLLRALGVEAGCVGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + + +   D   TTP  + +   L+    QG+ HV++EASSH L Q RL  + L  G 
Sbjct: 147 LGSRLEAAPADAMNTTPDVLTINHQLADWQHQGIKHVALEASSHALHQGRLASLSLHTGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH     Y  AK+ LF         AI  ADD  + +V+  A  +    +
Sbjct: 207 FTNLTRDHLDYHGNAADYAAAKLSLFNTF--NLKRAIFNADDPVASQVLAVAGAS---AI 261

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +  +G   H++          + I       +    L G F  +N + A      +G D
Sbjct: 262 GITLEGAEAHVQVAIRSMRPMLLEIQSPWGAAEINLALSGRFNAFNVVAAIVAVTGLGHD 321

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V    E L  VPGR E +  +     +  DYAHT ++LE  L+ +R  T GR+ VVF
Sbjct: 322 FHRVCAAAESLKPVPGRMERILMSGNRLAVV-DYAHTPDALESALQTLRGETKGRLWVVF 380

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIE 447
           GCGGDRD GKR +MG+ A   AD  +VT DNPR E PEKI  ++I G     E   +R E
Sbjct: 381 GCGGDRDSGKRSLMGRSAARWADHIVVTSDNPRGEMPEKIIEDVISGCGNQAEVVVDRAE 440

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AIR A+ +    D ++VAGKGHE    +  G +    D  ++ E+
Sbjct: 441 AIRHALALAESGDTVLVAGKGHEDYQDIA-GVRLPFSDQRVLSEL 484


>gi|197285922|ref|YP_002151794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227356429|ref|ZP_03840817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
 gi|194683409|emb|CAR44155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227163539|gb|EEI48460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
          Length = 495

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/495 (31%), Positives = 241/495 (48%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P L + L    +Q     + +++ DSR   +G +FVAI G++ DG  +IPQAIAQG  A+
Sbjct: 4   PNLSDLLGALGIQAPSLTLKDMTLDSRKAASGDLFVAIKGHETDGRRYIPQAIAQGVCAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSV 129
           +  +               P++ ++N    LS  A   Y +      ++ VTGT+GK++ 
Sbjct: 64  LAEAEGIATHGEIRESHGIPVIYIENLNCQLSKLAGIFYHQPANKLKLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G  S  +G     +         TT S + +   L  L +QG T  ++E
Sbjct: 124 TQLLAQWAQGLGEVSAVMGTVGNGLLDHIVPAMNTTGSAVDIQLELQQLVNQGATFTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +  +A  FTNL RDH+DYH     Y  AK  LF          II A
Sbjct: 184 VSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEQAKWLLFS--THHSGEKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DDA   + +    +A    ++      +QG+++   ++        +  +    + +   
Sbjct: 242 DDAVGHKWLTHLPDAVAVTMADKLPANWQGRYVQATQINYHDAGATIHFNSSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N L A    +A+      V++    L  V GR E    ++R   + VDYAH
Sbjct: 302 PLMGAFNVSNLLCALATLLALEYPLDAVIKASSALTPVCGRMEVFSADNR-PTVIVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  +FGCGGDRD+GKRP+MG +A   AD  ++TDDNPRSE+
Sbjct: 361 TPDALEKALQAARLHCTGKLWCIFGCGGDRDKGKRPLMGAVAEQFADKVVITDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ G+      +    R EA+   +   +  D+++VAGKGHE   IV      
Sbjct: 421 PQAIIQDILSGLMDPGRALAIEGRAEAVTNVVMQASPADMILVAGKGHEDYQIVGTRRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D   +  +LG+I
Sbjct: 481 YS-DRLTVARLLGVI 494


>gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
 gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
          Length = 479

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/500 (29%), Positives = 248/500 (49%), Gaps = 43/500 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+D    D                E ++ E++ +S+ +  G IF AI G K DG+ FI
Sbjct: 1   MKLKDFFNTD---------------SEVEVGEITQNSKLVVPGDIFFAIKGAKVDGNDFI 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+++GA A+V +         A  +   P   VD+    ++  A + Y    +++  +
Sbjct: 46  DDAVSKGAVAVVSTE-------PAKKKYPVPYFQVDDIDLAMAKAAVKFYKNPSDDMFFI 98

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176
            +TGT GK+S++  ++ I   +G+    IG  +             TTP+ +YL   +  
Sbjct: 99  GITGTKGKTSISYLLESIFNEAGIPCSVIGTINYRINGEVFAKAPNTTPAALYLYYMIDK 158

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + S G   V +E SSH L+  R+ G+      FTNL RDH+D+H+  + YF AK +LF+ 
Sbjct: 159 MRSAGTKVVIMEVSSHALELKRVFGLNFDVALFTNLQRDHMDFHKNFENYFAAKEKLFDS 218

Query: 237 LLPKESPAI---IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           L+    PA    +  DD Y   +  +   A   ++ V        ++      +   VT 
Sbjct: 219 LIENSKPAKTAIVNIDDQYGLRLADKIK-AKTTLIPVSL------VEAENVKESLNGVTF 271

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S +G+       L G+  +YNA+ A    +A G+D    L+ + KL  +PGR + V    
Sbjct: 272 SYKGESAS--INLLGKHNLYNAVFAVKAAMAYGVDLQTALKGIAKLQGIPGRMQRVN-KG 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   ++VD+A+T+ SL    + +    +G II VFGCGGDRD+ KRP+MG  A   +   
Sbjct: 329 QPFYVFVDFAYTTESLMKAYETLEPYKNGNIITVFGCGGDRDRTKRPLMGLAACQNSSHV 388

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++T+DNPR+ED ++I  +I++G+ G+       +R  AI+T I +  + D+L++AGKGHE
Sbjct: 389 LLTNDNPRTEDQQQIFNDILNGMKGYTNYEIVQDRALAIKTGISLCKENDILLIAGKGHE 448

Query: 471 TVHIVTNGEKKMSVDCDIIR 490
              I+  G+     D +   
Sbjct: 449 DYQILA-GKTIHFSDRETAE 467


>gi|86608711|ref|YP_477473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557253|gb|ABD02210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 510

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 247/501 (49%), Gaps = 20/501 (3%)

Query: 11  FPELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +L++Q  I P          ++  + +DSR +Q G +F+ + G++ DG  F+ QA+A 
Sbjct: 8   LSKLLHQAGIQPQLAQGSLEGVQVWGLCADSRQVQPGDLFLGMPGSRVDGGSFVAQALAA 67

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENILAVTGTS 124
           GA A ++S              + P+LV+      + ++  A+  YG  P   L + G +
Sbjct: 68  GAVAALISQEAWESVSGEAGWGSQPVLVLPRASLNRAVAQVAAAFYG-FPARQLTLVGVT 126

Query: 125 GKSSVA---SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           G +        ++ + Q +G S+  +G        +++    TT  P  L ++L      
Sbjct: 127 GTNGKTTTTHLIEHLVQAAGRSAALLGTLYNRWPGYSEVASHTTLFPPELQRSLREAQRA 186

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G     +E SSH L Q R+ G    A  +TNL +DH+D+H + + Y+ AK  LF +   +
Sbjct: 187 GAEVAVMEVSSHALAQDRVWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLFRQEYLQ 246

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVE 296
              A+I ADDA  + ++ +A     +  +   Q       +    V    +  Q T+   
Sbjct: 247 -GRAVINADDAGGRRLL-QAIRPDLQPWAYSLQPLQGIPGLWPSNVQLHPSGLQATLHTP 304

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F    PL G F + N L A G+ + +GI   ++   L     VPGR E V    +  
Sbjct: 305 SGAFAVAAPLVGSFNLANLLAAVGVALHLGIPVEIIQSALPHFPGVPGRMERVTLPGQDI 364

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE +LK +R+   G++I VFGCGGDRD+GKRP MG+IA   AD  IVT
Sbjct: 365 AVIVDYAHTPDGLENLLKALRSQVQGQLICVFGCGGDRDRGKRPQMGRIAATWADQVIVT 424

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+EDP++I  +I+ GIPG     + +R +AIR AI      D +V+AGKGHE   I
Sbjct: 425 SDNPRTEDPQQILRDILAGIPGSPRAVEVDRRQAIRLAILAAQPGDTVVIAGKGHEDYQI 484

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           +   EK    D +  R  L L
Sbjct: 485 LGT-EKIHFDDREEARAALAL 504


>gi|251792018|ref|YP_003006738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533405|gb|ACS96651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 488

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 241/476 (50%), Gaps = 13/476 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  ++ DSR  +AG +F+AI G++ DG  +IPQA+  GA A++  +  + Q      
Sbjct: 15  DVNLIHMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALQNGASAVIFEADSAQQHLQIHY 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N P++      + LS  A   Y    +   ++ VTGT+GK++    + Q  Q  G +S
Sbjct: 75  EQNVPLIAFYQLSENLSRLADVFYQSPSKRLTLVGVTGTNGKTTTTQLLAQWTQLLGHTS 134

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +    ++   TT S + +  +L+   +QG    ++E SSHGL QHR++G+ 
Sbjct: 135 AVMGTIGNGLFGQVKEAANTTGSAVEIQASLADFVAQGADFAAIEVSSHGLVQHRVEGVH 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A  FTNL RDH+DYH + + Y  AK RLF EL  +     I ADD      ++   NA
Sbjct: 195 FSAAVFTNLSRDHLDYHHSMENYAAAKKRLFTELDSRNQI--IDADDPIGAAWLRELPNA 252

Query: 264 GCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                +  +   Q +++    V   H    +  +    D +    L G F V N L+   
Sbjct: 253 VAVSTNPDFSPQQTQWLKAVDVHFHHKGAVIKFASSWGDGELHSALIGAFNVSNLLLVTA 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G   + ++  + KL  V GR E + T +    + VDYAHT ++LE  L+  R   
Sbjct: 313 TLLTLGYSLSELVNSVNKLTGVCGRMEML-TATHKPTVIVDYAHTPDALEKALQAARLHC 371

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437
            G++  +FGCGGDRD+GKRP+M  IA  L+D  I TDDNPR+ED  +I A+I+ G     
Sbjct: 372 HGKLWCIFGCGGDRDRGKRPLMAGIAEKLSDHVIATDDNPRTEDHTQIMADILKGFINPQ 431

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  R EAI TAI+   + DV+++AGKGHE   I+    K    D ++ R  L
Sbjct: 432 AVQVIHQREEAIATAIKSAVENDVILIAGKGHEDYQIIGK-TKHHFSDQEVARHYL 486


>gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
 gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
          Length = 496

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/500 (31%), Positives = 243/500 (48%), Gaps = 16/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       I Q+   P    E+++  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLRELL--TLIPTITQIPEHP--ALEKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI       + +              +  ++ V++     +  A+  YG       ++
Sbjct: 57  SSAIE---AGAIAAIISPAAALQYPPTGDAYVIQVEDVVSVCAEIAAAFYGYPARQMKMI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    +    +  +G   T  + + Q    TTP    L + L+  
Sbjct: 114 GVTGTNGKTTTTHLIEFFLSQCQYPTALLGTLYTRWAGYEQTAVHTTPFAAQLQEQLAQA 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH L Q R+         FTNL +DH+D+HQ  + YF AK +LF   
Sbjct: 174 LKAGSQYGVMEVSSHALAQRRVQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSAE 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   AII  DD Y K ++           SV       + + +C   N     +    
Sbjct: 234 YLK-GKAIINLDDPYGKRLIDSLSREKVWSYSVSDSSANFYTRDLCYEANGVSGILHTPI 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
            +  F  PL G++ + N L A G  +++G+D   ++++L     VPGR E V  +  +  
Sbjct: 293 GEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQDI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA +LAD+A+VT
Sbjct: 353 SVIVDYAHTPDSLENLLKAARPFIEGRMICVFGCGGDRDRTKRPKMGKIAAELADVAVVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I  +I+ GIP  +      +R  AI  AI      D +++AGKGHE   
Sbjct: 413 SDNPRTEDPQQILKDILAGIPESVKPQVIADRALAILKAITEAKPGDGVLIAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  RE L
Sbjct: 473 ILGT-EKIHFDDREQAREAL 491


>gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36]
 gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36]
          Length = 503

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/476 (30%), Positives = 228/476 (47%), Gaps = 14/476 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +N +  DSR +QAG  FVAI G+  DG  FI +A+  GA A++  +    +      
Sbjct: 29  ELVVNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGATAVLKDADNEAEHGHIDY 88

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               PI+      + LS  A   Y    +   ++ VTGT+GKS++   +          +
Sbjct: 89  IDQRPIISFFGLNQALSALADNFYQSPSQQLKLIGVTGTNGKSTITQIIANWVTLLAGKA 148

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     + +       TT S + +   ++    QG    ++E SSHGL Q R++ + 
Sbjct: 149 GVMGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGAELCAMEVSSHGLIQGRVNALD 208

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH    AY +AK  LF+  +      I+  DDAY K   ++  +A
Sbjct: 209 FDVALFTNLTRDHLDYHGDMDAYADAKKILFQGAV---KHKILNVDDAYGKMWAQQWSDA 265

Query: 264 GCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
               +      + G F++  ++          +     D      L GEF   N + A  
Sbjct: 266 IQFSVRQDLSAHHGAFLYCNELSFDTGGFSCELKTSWGDGTLQCSLIGEFNASNVVAACA 325

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A+G D   +L    KL  V GR E      +   +  DYAHT ++LE  L+ +R   
Sbjct: 326 SLLALGYDLDDLLRVAPKLTAVCGRMELFKQAGQAACVV-DYAHTPDALEKALQALRVHC 384

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
            G++  ++GCGGDRD GKRP+M ++A   AD+A++TDDNPR+E    I  ++++G+    
Sbjct: 385 EGKLWCIYGCGGDRDTGKRPLMAQVAEQFADMAVITDDNPRTESAAAIVTDMLNGLAKPD 444

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 +R  AI+ A+E  +  D+++VAGKGHE   I+   EK    D + I E+L
Sbjct: 445 AAHVIHDRRRAIQWAMEQSSADDIILVAGKGHEDYQII-GVEKHHYSDRETITEML 499


>gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
 gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
          Length = 480

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/474 (29%), Positives = 217/474 (45%), Gaps = 19/474 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I  +S DSR ++ G I+  + G   DGH FI  AI  GA  IV S           + 
Sbjct: 13  VNITGLSFDSRTVRPGNIYFCLPGLTNDGHDFIDSAIKNGAVCIVHSKEL------LNMA 66

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSF 145
           S    + V++    ++  A   Y K  + +     TGT+GKS++ + ++ +         
Sbjct: 67  SGAVYIRVEDVNDAMNKVARIFYAKPSDKLKMYGVTGTNGKSTITNIIRDMIND-KTPCG 125

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG  +           LTTP  ++L   L+ +   G+   ++E SSHGL QHR+DGI  
Sbjct: 126 YIGTIAIKYGDIELQPNLTTPDALFLQSKLADMVRVGMKACALEVSSHGLAQHRVDGISF 185

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL  DH+D+H T + YF AK  LF+ L+ +   +I+  DD   + +   +    
Sbjct: 186 DCAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLVKENGVSILNRDDEKYEALKDCSK--- 242

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            RV+S G  +        +       Q  +   G  +     L G F VYN L A     
Sbjct: 243 ARVVSYGINKEADYRAINIKMSSQGTQFDLVYSGHMYPIKTNLVGNFNVYNLLAAVSALN 302

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITS 381
             G D   ++E    +  V GR E +    +   + VD+AHT + +E +++  R+  +  
Sbjct: 303 ETGYDLDKIIEKCSHIAQVEGRMERIDC-GQPYNVIVDFAHTPDGMEKMMQFGRSITMPG 361

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--F 439
            R+I VFG  G RD  KR + G++A    D  IVT+D+PR EDP++I  +I  GI     
Sbjct: 362 HRLIAVFGSAGKRDVHKRKVFGELADKYCDYIIVTEDDPRDEDPKEIADQIKSGIQNTLH 421

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +   +R EAI  AI    + D +++ GKG E+     NG      D    +E +
Sbjct: 422 VFVQDRYEAIHQAISSAQEGDTVLLLGKGDESFIYRENGRAPWVGDNVAAKECI 475


>gi|33603177|ref|NP_890737.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella bronchiseptica RB50]
 gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella bronchiseptica RB50]
          Length = 945

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 240/480 (50%), Gaps = 26/480 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++  DSR I+ G +FVA  G   DG  F+ QA+A+GA AI+  +  +         +   
Sbjct: 31  DLRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGA-----PVAPAGAQ 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V   R  L   A   YG+  +++  +A+TGT+GK+S   ++ Q+  R G     IG 
Sbjct: 86  ALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT 145

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +     +    LTTP  + + + L+ + + G   V++EASS G++Q RLD I++   
Sbjct: 146 LGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVA 205

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T Q Y  AK  LF+   P    A++ ADD   + ++     A    
Sbjct: 206 GFTNLTRDHLDYHGTMQRYEQAKAALFQ--WPDLQAAVVNADDPAGERLLASLPAALKTG 263

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+      +H + + A  + Q  T+++   +   +  L G+  + N L+ AG    +G 
Sbjct: 264 YSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGW 323

Query: 328 DSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               +   L  +  V GR + V           ++G  + VDYAHT ++L   L  +R +
Sbjct: 324 PLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPV 383

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ VFGCGG+RD GKRP MG+IA++ AD  +VT DNPRSE P+ I  +I+ GI
Sbjct: 384 AQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGI 443

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P       + +R  AI   +      DV+++AGKGHET   +  G K    D    R  L
Sbjct: 444 PAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDI-GGRKLPFDDRQWARLAL 502



 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 150/388 (38%), Gaps = 24/388 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS+D+R I  G +FVA+ G   DGH ++PQA + GA A VV+   +            P
Sbjct: 509 AVSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA--------DVALP 560

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            LV+ +T   L    +         ++AVTG++GK++    +  I  +        G  +
Sbjct: 561 QLVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQW---QGDDGRLA 617

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F  +  +        A+  + +   G+ H        G  +             TN
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHP-------GEIERLAAMAAPTVALVTN 670

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             R+H ++  T +A  +    +   L P++  A+   D+ Y+    K A     RVL  G
Sbjct: 671 AQREHQEFMHTVEAVAHENGAVISAL-PEDGVAVYPGDEPYAAIWDKLAGAR--RVLRFG 727

Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            Q G  ++ ++V    +  Q  +       +   P+PG   + NAL A    +A G    
Sbjct: 728 LQPGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLH 787

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             +  L     V GR +    +     I   Y    +S    +  +  + + R +V+   
Sbjct: 788 TCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDM 847

Query: 391 GGDRDQG--KRPIMGKIALDLADIAIVT 416
           G   D G      +G  A +    A++T
Sbjct: 848 GEVGDNGPAMHREVGDYAREHGIDALIT 875


>gi|293376046|ref|ZP_06622299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|292645347|gb|EFF63404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
          Length = 485

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/501 (29%), Positives = 250/501 (49%), Gaps = 29/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ DL  K   EL+     + ++   ++I  +  DSR +  G +F AI G   DGH +I
Sbjct: 1   MRM-DL--KQMSELLG----YTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+  GA A+V            ++        V NT+K L++ +S+ YG+  +N  ++
Sbjct: 54  EDAVRNGAIAVVGEE---------SLNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT+GK+++   +Q + +  G+ S  IG   +     +    TTP    L + L    
Sbjct: 105 GVIGTNGKTTITYLIQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGV 164

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              + +V +E SSHG+ ++R+D +      FTN+  +H+DYH+T + Y   KMR F +  
Sbjct: 165 RHNLPYVVMEVSSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFS 224

Query: 239 PKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
             +    AII  DD ++   +        ++L+ G Q K  I  K +     +   ++ V
Sbjct: 225 DYDDKKMAIINCDDEHASSFIS---VTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYV 281

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+       PL G++ VYN L       ++G     ++  +E + V+ GRFE++   S 
Sbjct: 282 KGQFICQMTIPLFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPS- 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  + +DYAH  +++  +L  +  I++G II V G GG+RD+ KR IMG+ A  L+D   
Sbjct: 341 GVTVVIDYAHNPDAIFQVLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPR+EDP  I  +++ G     +    +R +AI  A++     D +V+ GKGHE  
Sbjct: 401 FTSDNPRNEDPLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHEKT 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + NG+     D  ++ E++
Sbjct: 461 QNI-NGKIVPFNDKIVVEEVI 480


>gi|262044871|ref|ZP_06017914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037840|gb|EEW39068.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 471

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/474 (32%), Positives = 239/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D         P+
Sbjct: 1   MTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +   ++ VTGT+GK++    + Q  +  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   LS L  QG T  ++E SSHGL QHR+  ++  A  F
Sbjct: 121 GNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +         +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R   SG++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKALQAARLHCSGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+    +    
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R +A+  A+    + DV++VAGKGHE   IV N     S D   +  +LG +
Sbjct: 418 EGRAKAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLDYS-DRVTVARLLGAV 470


>gi|33598266|ref|NP_885909.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella parapertussis 12822]
 gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella parapertussis]
          Length = 945

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 240/480 (50%), Gaps = 26/480 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++  DSR I+ G +FVA  G   DG  F+ QA+A+GA AI+  +  +         +   
Sbjct: 31  DLRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGA-----PVAPAGAQ 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V   R  L   A   YG+  +++  +A+TGT+GK+S   ++ Q+  R G     IG 
Sbjct: 86  ALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT 145

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +     +    LTTP  + + + L+ + + G   V++EASS G++Q RLD I++   
Sbjct: 146 LGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVA 205

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T Q Y  AK  LF+   P    A++ ADD   + ++     A    
Sbjct: 206 GFTNLTRDHLDYHGTMQRYEQAKAALFQ--WPDLQAAVVNADDPAGERLLASLPAALKTG 263

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+      +H + + A  + Q  T+++   +   +  L G+  + N L+ AG    +G 
Sbjct: 264 YSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGW 323

Query: 328 DSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               +   L  +  V GR + V           ++G  + VDYAHT ++L   L  +R +
Sbjct: 324 PLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPV 383

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ VFGCGG+RD GKRP MG+IA++ AD  +VT DNPRSE P+ I  +I+ GI
Sbjct: 384 AQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGI 443

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P       + +R  AI   +      DV+++AGKGHET   +  G K    D    R  L
Sbjct: 444 PAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDI-GGRKLPFDDRQWARLAL 502



 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 150/388 (38%), Gaps = 24/388 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS+D+R I  G +FVA+ G   DGH ++PQA + GA A VV+   +            P
Sbjct: 509 AVSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA--------DVALP 560

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            LV+ +T   L    +         ++AVTG++GK++    +  I  +        G  +
Sbjct: 561 QLVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQW---QGDDGRLA 617

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F  +  +        A+  + +   G+ H        G  +             TN
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHP-------GEIERLAAMAAPTVALVTN 670

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             R+H ++  T +A  +    +    LP++  A+   D+ Y+    K A     RVL  G
Sbjct: 671 AQREHQEFMHTVEAVAHENGAVI-GALPEDGVAVYPGDEPYAAIWDKLAGAR--RVLRFG 727

Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            Q G  ++ ++V    +  Q  +       +   P+PG   + NAL A    +A G    
Sbjct: 728 LQPGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLH 787

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             +  L     V GR +    +     I   Y    +S    +  +  + + R +V+   
Sbjct: 788 TCIAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDM 847

Query: 391 GGDRDQG--KRPIMGKIALDLADIAIVT 416
           G   D G      +G  A +    A++T
Sbjct: 848 GEVGDNGPAMHREVGDYAREHGIDALIT 875


>gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase
           [Alistipes shahii WAL 8301]
          Length = 484

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 243/504 (48%), Gaps = 32/504 (6%)

Query: 2   KLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           KL D++      E+    +          I  +  DSR ++ G  F A+ G + DGH +I
Sbjct: 3   KLTDILKNTPVREVCGDTAA--------AIGGLVYDSRAVKPGDCFFAVPGTQSDGHDYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P A+ +GA AIV           A        ++V ++   ++  A+  Y        ++
Sbjct: 55  PIAVEKGAAAIVCER------MPADAAEGVAYVLVGDSAGAMADMAAAFYDYPSRELKLV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A+ +  + +  G  +  I      I     +   TTP  I L   +  +
Sbjct: 109 GITGTNGKTTTATLLYDLVRAMGYKAGLISTVVYKIDGREVEATHTTPDSIRLNAMMREM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R  G+    G F+N+  DH+DYH+T   Y  AK   F+ L
Sbjct: 169 ADAGCAYCFMECSSHAIVQERTRGLDFAGGIFSNITHDHLDYHKTFAEYIRAKKLFFDGL 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + A+  ADD   + ++    N    V +   +       K+  +H    + + ++G
Sbjct: 229 -PKGAFALTNADDRNGRVMV---QNTAAAVSAYSLRAMADFRCKIVEMHLDGML-LRIDG 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++      L G F  YN L   G    +G++   VL  L  LH V GRFE +   + G  
Sbjct: 284 QELWV--GLLGRFNAYNLLAVYGAAALLGLNRGEVLRVLSMLHAVSGRFEKI-RAANGTT 340

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +++ I  I     ++IVV GCGGDRD+ KRP M  IA+  A  A+ 
Sbjct: 341 AIVDYAHTPDALENVIQTIEEIRTPGQQLIVVCGCGGDRDRTKRPEMAAIAVKYATTAVF 400

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR E PE I  +++ G+     ++   +R EAIRTA+ +    D+++VAGKGHET 
Sbjct: 401 TSDNPRHESPEAILDDMVAGLEPGARYLRIADRAEAIRTAVMLSRPGDIILVAGKGHETY 460

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            IV +  K    D + I++   L+
Sbjct: 461 QIVGD-VKHPFDDREEIKKRFALL 483


>gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans
           C54]
          Length = 954

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/485 (33%), Positives = 242/485 (49%), Gaps = 27/485 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR I+ G +FVA  G   DG L+I +A+A GA A++  +  +    +A    +TP
Sbjct: 30  HLKLDSREIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPATAAIEAAAAAGDTP 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V   R  L       YG+    +  +AVTGT+GK+S   ++     R+      IG 
Sbjct: 90  MLPVTGLRALLGELGDTWYGRPSSTLAVVAVTGTNGKTSSVQWIAHALGRNDKPCGTIGT 149

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +          LTTP  + + + L+ +   G   V++EASS G++Q R+DG+++   
Sbjct: 150 LGAVLPDGQTLGGHLTTPDVLTVHRLLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALA 209

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           ++TNL RDH+DYH T + Y  AK  LF    P  S A++ ADD   + ++     A   V
Sbjct: 210 AYTNLTRDHLDYHGTMERYEAAKASLFR--WPGLSAAVVNADDEAGRRLIASLP-ADLSV 266

Query: 268 LSVGYQGK-----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +             +  + + A    Q  T+     +   +  L G   V N L+ AG+ 
Sbjct: 267 MGYSLSADPAIPAAMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVL 326

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILK 374
             +G+  A +   L     V GR + V            RG  + VDY+HT +SL   L 
Sbjct: 327 YKLGLPFAQIARELAATDPVDGRLQTVEPVAASTQAHAGRGALVVVDYSHTPDSLARALM 386

Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +R +    +GR++ VFGCGGDRD GKRP MG+IA +LAD  +V+ DNPRSE P+ I A+
Sbjct: 387 ALRPVAQARAGRLVCVFGCGGDRDAGKRPEMGRIAAELADHVVVSSDNPRSESPDAIVAQ 446

Query: 432 IIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I+ GIP  +    + +R  AI  AI     +DV+++AGKGHET   +  GEK    D + 
Sbjct: 447 ILAGIPASVAVEVQVDRARAIMQAIWASAPEDVVLLAGKGHETYQEIA-GEKLPFDDREW 505

Query: 489 IREIL 493
            R  L
Sbjct: 506 ARLAL 510



 Score =  180 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 92/430 (21%), Positives = 165/430 (38%), Gaps = 35/430 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55
           L+     E   +++   + + +R+          +  VS+D+R I AG +FVA+VG   D
Sbjct: 481 LLAGKGHETYQEIAGEKLPFDDREWARLALLLPLVKGVSTDTRRIGAGELFVALVGENFD 540

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H ++ QA  +G        A +     A   S+ P LV+ +TR  L    +    +   
Sbjct: 541 AHNYLDQAAERG--------ACAAVVAHAVPESSLPQLVLGDTRVALMRIGAAWRARFKL 592

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++    +  +   +G    + G  +T  +   D  +         +  +
Sbjct: 593 PVVAVTGSNGKTTTKEMISAML--AGWR-GEAGRLATAGNLNNDIGVPLTVLRLRPEHRA 649

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G+ H    A    +               TN  R+H ++  T +A          
Sbjct: 650 AVFELGMNHPGEIAQLAAIA-------APSVALVTNAQREHQEFMHTVEAVALENGAAIA 702

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
            L P +  A+   D+ Y+    + A  A  R L  G Q G  ++ +++ A  +  +  + 
Sbjct: 703 AL-PADGVAVYPGDEPYAAIWDRLA--APRRALRFGLQPGLDVYAEQILADVDSTRCRVV 759

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D   P+PG   + NAL A    IA G    + +  L     V GR ++   +  
Sbjct: 760 TPVGSADLTLPVPGVHNLRNALAAIASAIAAGAPLDVAVRALAGFSPVAGRMQYKKLSDG 819

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLA-D 411
              I   Y    +S+   +  +  I   R++V+   G   D G      +G  A +L  D
Sbjct: 820 TLLIDDTYNANPDSVRAAIDVLARIAGTRVLVLGDMGEVGDNGPAMHEEVGNYARELGLD 879

Query: 412 IAIVTDDNPR 421
             I   D  R
Sbjct: 880 ALITLGDASR 889


>gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chitinophaga pinensis DSM 2588]
 gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis
           DSM 2588]
          Length = 488

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/499 (31%), Positives = 246/499 (49%), Gaps = 25/499 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  +SI  +    +  +N +S DSR +  G  F+AI G   DGHLFI +AIAQG
Sbjct: 2   KTLRDILYNVSIREVHGSTDTAVNSLSIDSRAVTQGGAFIAIKGVHADGHLFIDKAIAQG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A  I+        +   ++  +   ++V+++     + A   Y      +  + VTGT+G
Sbjct: 62  AAVIICE------ELPQSLADDLTYVLVNSSATAAGVIAGNYYDNPSHKLKLVGVTGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++A+ + ++  +       +      I         TTP  I+L   L+ +  +G  +
Sbjct: 116 KTTIATLLFRLFSKLRFHCGLLSTVQNQIGDKVVPATHTTPDAIHLNALLADMVDEGCEY 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH + Q R+ G+K   G F+N+  DH+DYH+T   Y   K   F+ L P  + A
Sbjct: 176 VFMEVSSHAVHQQRIAGLKFAGGIFSNITHDHLDYHKTFDEYIKVKKAFFDGL-PTTAFA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DD     ++    N   +  S   +      K     +N   + ++V  K+  F  
Sbjct: 235 LTNLDDKRGNVML---QNTRAKKQSYSLKTVA-DFKGKILENNLTGLIMTVNEKEVHFR- 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L GEF  YN L   G  I +G D   VL+ L  L    GRF+++ +        VDYAH
Sbjct: 290 -LIGEFNAYNLLAVYGTAILLGQDKDEVLQALSDLSGAEGRFDYITSAKDRIIGIVDYAH 348

Query: 365 TSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++L  +L  I+ +  G  ++I V GCGGDRD  KRP+M   A + +D  I+T DNPRS
Sbjct: 349 TPDALLNVLATIKNLRKGNEQVITVVGCGGDRDTAKRPVMAAAATEHSDKVILTSDNPRS 408

Query: 423 EDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           EDP  I  ++  GIP       +   +R EAI+TAI + N  D++++AGKGHE    +  
Sbjct: 409 EDPVAIIQQMEAGIPVHQKRKALSITDRKEAIKTAISLANPDDIILIAGKGHEKYQEI-Q 467

Query: 478 GEKKMSVDCDIIREILGLI 496
           G K    D  ++ E+L L+
Sbjct: 468 GVKHPFDDKKVLLEMLELM 486


>gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
 gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
          Length = 486

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/506 (30%), Positives = 240/506 (47%), Gaps = 37/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E+I           E +I    +DSR ++ G  FV I G   DGH F+
Sbjct: 1   MKLNQLLERLEYEVIQGSD-------EAEITTFINDSRKVEKGSAFVCISGAVVDGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +   +GA A++V               +  ++ V ++R  L+L ++  +G   + +  +
Sbjct: 54  EEVAQKGAAAVIVEREVEA-------PEDMTVIRVADSRYALALMSAAYFGYPADKMKII 106

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        ++ I +  G     IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYMIKSILEGVGHKVGLIGTIEAIIGDEKIPAANTTPESYTIHQYFARM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G   V +E SS GL  HR  GI    G FTNLGRDHI    H+  + Y   K  LF+
Sbjct: 167 VEAGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLLFQ 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VT 292
           +        I   DD Y ++V  RA    CRV + G+  K         + ++     V 
Sbjct: 227 QC----RLGIANVDDEYFEDVFSRAT---CRVETFGFSEKADLRAVDTHLVSRPGYLGVA 279

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V G  DFD    +PG+F VYN+L A  +C    +    + + L K+  V GR E +  
Sbjct: 280 YHVSGLMDFDVEIDIPGKFSVYNSLTAIAVCRHFQVPVEQIKKAL-KVANVKGRIEMIPV 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +     + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD
Sbjct: 339 SDE-FTLMIDYAHNAMSLESLLTTLKEYEPARLVCLFGCGGNRSRERRYEMGEVSGRLAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           ++I+T DNPR E+P+ I  +I  GI      ++E  +R EAI+ AIE   + DV+V+AGK
Sbjct: 398 LSIITSDNPRFEEPQAIIDDIKTGIHKTDGKYVEICDRKEAIKYAIEHGQRGDVIVLAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    +  +IREIL
Sbjct: 458 GHEDYQEIK-GVKYPMDERVLIREIL 482


>gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
 gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
          Length = 494

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/494 (32%), Positives = 242/494 (48%), Gaps = 10/494 (2%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++L       L   L I   +     +  +  DSR +  G  FVAI G+  DG  FI  A
Sbjct: 3   KELTLATL--LAPWLDISTDESANVVVERLELDSRKVTQGTTFVAIKGHAVDGRRFINSA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA AI+  +            S   I+ +D   + LS  AS LY      ++ VTGT
Sbjct: 61  IELGANAIIAEACELHPHGKVERSSGVSIVYLDQLAQHLSALASLLYPLSDNKLIGVTGT 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+++   + Q     G  +  +G T     +  Q    TT + I + + L  L  QG 
Sbjct: 121 NGKTTITQIMAQWLDLIGHKAAVMGTTGNGFLADLQPAANTTGNAIEIQQTLHQLQQQGA 180

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + ++E SSHGL Q R+  +    G F+NL RDH+DYH T + Y  AK  LF++      
Sbjct: 181 QYTALEVSSHGLVQGRVKTLPFEVGVFSNLSRDHLDYHGTMEEYAEAKFSLFDQ--HTCK 238

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD      +KR  +A    L+     + +  + V        + I       +F
Sbjct: 239 TAVINIDDQVGASWVKRLDSAIAVSLNPTDHPRAVWAESVSYSEAGISLVIDGLFGRGEF 298

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L GEF   N L+A    +A+G+D   +L+    L  V GR E   T S   ++ VDY
Sbjct: 299 TIALIGEFNASNVLLALTALLALGVDKQQLLDTASSLKPVLGRMELF-TASDKAKVVVDY 357

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  LK +R    G++  +FGCGGDRD GKRP+M  I  +LAD  I+TDDNPRS
Sbjct: 358 AHTPDALEKALKALRVHCHGKLWGIFGCGGDRDTGKRPMMAAIGEELADKVILTDDNPRS 417

Query: 423 EDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E P  I  +++ G+      I + NR +A++ A+    +QD++++AGKGHE   ++ +  
Sbjct: 418 ESPAAIVEDMLKGMNEPELAIVEHNRFDALKYALAHSGEQDIILLAGKGHEDYQVMADKT 477

Query: 480 KKMSVDCDIIREIL 493
              S D +  +++L
Sbjct: 478 IHYS-DRESAQQLL 490


>gi|318040403|ref|ZP_07972359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0101]
          Length = 506

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/498 (30%), Positives = 238/498 (47%), Gaps = 22/498 (4%)

Query: 14  LINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+ Q+ +  P       +  VS DSR +  G +FV + G + DG +F PQAI  GA   V
Sbjct: 8   LLRQVGLAVPPGLANADVTSVSCDSRRVGPGTVFVGLPGAQVDGGVFWPQAIEAGAVLAV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +  A +     A      P+LVV +   ++  + A+  + +  + +  + VTGT+GK++ 
Sbjct: 68  IGRAAAEACPPA---DQDPVLVVTDPVARWAGMLAAEFWQQPSQRLHLIGVTGTNGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ +    G  S   G         +   + TT     L   L+  +  G    ++E
Sbjct: 125 THLIEHLAASCGTPSALFGTLVNRWPGHSVTAQHTTAFADVLQGQLAQAAEAGAQVGAME 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----ELLPKESPA 244
            SSH LDQ R+ G +     FTNL +DH+DYH + QAYF AK  LF     E+   ++ A
Sbjct: 185 VSSHALDQQRVSGCRFAGAVFTNLTQDHLDYHPSMQAYFEAKASLFSAAFLEMHEGQATA 244

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD + +++ +R      R          + ++++       +  +        F  
Sbjct: 245 VVNVDDPWGQQLAERLGGHAWRCSLEESSEAELRMEQLQFSSEGVKGVLVSPHGSGPFQS 304

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG------GRI 358
           PL G F + N L A G  +  G+  A +L+ L     VPGR E VG             +
Sbjct: 305 PLLGRFNLMNQLQAVGALLQQGLPLANLLQGLASFRGVPGRMERVGVGRAECCEGSLPAV 364

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE  LK  R    G++I VFGCGGDRD+ KRP+MG IA  LAD  +VT D
Sbjct: 365 LVDYAHTPDGLESALKACRPFAQGQLICVFGCGGDRDRTKRPLMGSIAARLADQVVVTSD 424

Query: 419 NPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+EDP++I  +++ GIP       + +R  AI   +      D++++AGKGHE   I+
Sbjct: 425 NPRTEDPQQILQDVMQGIPEGTAVQVEADRGRAIAAVVAAAQPADLVLIAGKGHEDYQIL 484

Query: 476 TNGEKKMSVDCDIIREIL 493
               K    D +   + L
Sbjct: 485 GT-TKIHFDDREEAEKAL 501


>gi|75907370|ref|YP_321666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
 gi|123610271|sp|Q3ME15|MURE_ANAVT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|75701095|gb|ABA20771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
          Length = 496

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/500 (34%), Positives = 255/500 (51%), Gaps = 17/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       ++ +   P    + ++  + ++S    AG +F+ + G + DG  F 
Sbjct: 1   MKLRELLAT-----VDSVENLPPVLADTEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA GA A +VS     ++  +       ++  +N  K  +  A+  YG   + +  +
Sbjct: 56  PSAIASGAIAAIVSPQAVEKNPPS---DEAVVISSNNMTKACAAIAAAFYGYPGQKLKLV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++ LS+  +G   T    F Q    TTP  + L + L+  
Sbjct: 113 GVTGTNGKTTTTHLIEFFLTKAQLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G     +E SSH L Q R+ G     G F+NL +DH+DYH   + YF AK  LF   
Sbjct: 173 VNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPD 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   AII ADD Y + ++K          SV      + +  +    N    TI    
Sbjct: 233 YLK-GRAIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGTIHTPE 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356
            D  F  PL G++ + N L + G  + +G+D  L+   + +   VPGR E V  N  +  
Sbjct: 292 GDVSFRSPLVGQYNLENLLASVGAVLHLGLDLQLIANAIPEFPGVPGRMERVQINPDQDI 351

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA +LAD+A VT
Sbjct: 352 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELADLAFVT 411

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDPEKI  +I+ GIP  ++    G+R  AIRTAI      D +++AGKGHE   
Sbjct: 412 SDNPRTEDPEKILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQ 471

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 472 ILGT-EKIHFDDREHARAAL 490


>gi|322640591|gb|EFY37242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647732|gb|EFY44217.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648081|gb|EFY44548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656887|gb|EFY53173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657403|gb|EFY53675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663722|gb|EFY59922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666555|gb|EFY62733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672286|gb|EFY68398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322679505|gb|EFY75550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686166|gb|EFY82150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195010|gb|EFZ80196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200081|gb|EFZ85168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201098|gb|EFZ86167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209495|gb|EFZ94428.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212253|gb|EFZ97077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
          Length = 495

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/495 (33%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+   I      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
          Length = 497

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/502 (29%), Positives = 243/502 (48%), Gaps = 31/502 (6%)

Query: 9   KDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           ++  ++I QL  ++      +R +++++ DSR    G +F+ I G   DGH ++      
Sbjct: 3   RNLQDVIRQLPGAVVTGNGADRTVSDLTIDSRTAGPGSLFICIKGVNTDGHKYVA----- 57

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             +A    +  +L +    +     ++ V +T++ +   A   Y   P   + + G +G 
Sbjct: 58  --KAAAQGAVAALTEQETEVPDGMTVIRVPSTQEAVKTLAPWFY-DWPARKMRMIGVTGT 114

Query: 127 SSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +   +    ++ +  R+G     IG  +  I    + +  TTP  + L K L  +     
Sbjct: 115 NGKTTTTNILRTLLTRTGHKVGLIGTINVMIGDEVRTSHNTTPDVVDLQKMLYEMVENHC 174

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---P 239
               +E SSH L   R+ GI+      TN+ +DH+D+H+T + Y  AK  LF  L     
Sbjct: 175 DTCVMEVSSHALALDRVAGIEYDTAVLTNITQDHLDFHKTMENYREAKALLFTRLHEGTK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEG 297
               A+  +DD  S  +M R      ++++ G +GK   +  +        + ++     
Sbjct: 235 PNKTAVFNSDDPSSAIIMPRVKT---KIMTYG-KGKDNDVYPLTFHVAASHMELNLQTPV 290

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + D    + GEF VYN + +    IA G+    ++  L+    VPGRF+ +    +   
Sbjct: 291 GEMDLKLHITGEFNVYNVMGSICAAIAEGLTREDIIRGLDDFAGVPGRFQLIHA-GQPFT 349

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE +LK  R IT G++ VVFG GGDRD+ KRPIMGKIALDLADIA+VT 
Sbjct: 350 VVVDYAHTPDGLENVLKTARQITKGKLWVVFGAGGDRDRKKRPIMGKIALDLADIAVVTS 409

Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPRSEDPE I  +I  G+          +  +R EAI   +      DV+++AGKGHE 
Sbjct: 410 DNPRSEDPEAIIRDIEEGLKDNPEGKEIHKITDRREAIEYVMAHAKPDDVVMIAGKGHEN 469

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ +       D +++R+  
Sbjct: 470 YQILKDRTIH-FDDGEVVRDFF 490


>gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 510

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/480 (31%), Positives = 233/480 (48%), Gaps = 18/480 (3%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              +  + ++  DSR  Q G +F+A+ G++  G     +A+A+GA A++   A  ++   
Sbjct: 25  PGLDVPLRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEALARGAVAVLWEPAPGVE--- 81

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSG 141
           A +    P + V    + L   A R +G       ++ VTGT GK+SV+ F+ Q   +  
Sbjct: 82  APVDLGVPCVAVPGLGQRLGEIADRFFGHPSGAMKLIGVTGTDGKTSVSQFLAQTLYQES 141

Query: 142 LSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                IG     +     +   TTP  + L + L+ L  +GV +  +E SSH L Q R++
Sbjct: 142 GRCGVIGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVRYTVMEVSSHALVQGRIN 201

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G  L     TNL RDH+DYH + +AY  AK RLF    P    AI+  DDA+ +++    
Sbjct: 202 GAALDIAVLTNLSRDHLDYHDSMEAYAEAKARLFR--WPGLETAILNLDDAFGRKLAAEL 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVC-----AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                ++L  G       +++V         +    ++            L G F V+N 
Sbjct: 260 AEREVQILGYGLAAASGEIEQVRGESVEYRPDGLAFSVVTPWGSGRLETGLLGAFNVHNL 319

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L      + +G+     LE L  +  VPGR E   +  +G  + VDYAHT  +L  +L+ 
Sbjct: 320 LAVLAALLQLGLSLTDALERLTHVRTVPGRMERF-SGGKGATLVVDYAHTPAALAQVLQA 378

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R    GR+  VFGCGG+RD GKRP+M + +   AD  ++T DNPR EDP+ I  E++ G
Sbjct: 379 LRMHCEGRLWCVFGCGGNRDPGKRPLMARASEQFADRVVLTSDNPRHEDPQDIAREVMTG 438

Query: 436 IPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                E     +R  A+  A       D+++VAGKGHETV IV + E++   D D+ R +
Sbjct: 439 FERPAEVHQELDRQAAVEWAWSHAAAGDLVLVAGKGHETVQIVGD-EQRPFSDRDLARRL 497


>gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
 gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 497

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/494 (31%), Positives = 239/494 (48%), Gaps = 19/494 (3%)

Query: 10  DFPELINQLSIFP---MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +  EL+   +I P        +++  +  +S   + G +F+ + G + +G  F P A+A 
Sbjct: 2   NLRELLTAAAITPGFEHPALNQEVKSLRMNSWECEPGSLFIGMPGTRVEGGNFWPSALAA 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A VVS     ++  A       ++VV +  +     A+  Y    +++  L VTGT+
Sbjct: 62  GAIAAVVSPQAKPREGEA------CVIVVPDIERACGRLAAAFYNYPSQHLSLLGVTGTN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+ +  R G  +  +G   S      +    TTP  + L + L+     G  
Sbjct: 116 GKTTTTHLVEHLLNRVGYPTALLGTLYSRWPGHCEVASHTTPFAVTLQEQLAAAVDAGCR 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SSH L Q R+ G +    +FTNL +DH+DYH+  + YF AK +LF     K   
Sbjct: 176 FGVMEVSSHALAQDRVWGCQFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTADYLK-GR 234

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AI+  DD + + + ++          +     F   + +    N     +          
Sbjct: 235 AILNGDDPFGQRLAQQLPRDRYWTYGLSKDADF-RAENLNYRSNGVTGAVHTPLGSGTLD 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDY 362
            PL G+F V N L A  +  A+G+    +L  L     VPGR E V  +  +   + VDY
Sbjct: 294 SPLVGQFNVANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDITVVVDY 353

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT +SLE +L+  R    G++I VFGCGGDRD+ KRP MG IA  LAD  +VT DNPR+
Sbjct: 354 AHTPDSLENLLRAARPFIPGKLICVFGCGGDRDRSKRPQMGAIAARLADQVVVTSDNPRT 413

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E+P++I  +I+ GIP     I +G+R +AI  AI      D +++AGKGHE   I+   E
Sbjct: 414 ENPQRILDDILAGIPPETAMIVEGDRRQAILQAILTAAPGDGVIIAGKGHEDYQILGT-E 472

Query: 480 KKMSVDCDIIREIL 493
           K    D +  R  L
Sbjct: 473 KVHFDDREEARNAL 486


>gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
 gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
          Length = 493

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/491 (29%), Positives = 239/491 (48%), Gaps = 24/491 (4%)

Query: 13  ELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL++ L +  +      ++ ++  DSR +Q   +FV I G   DGH +  +A+  GA  +
Sbjct: 10  ELLSALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIV 69

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           V      L +  A        ++V +T + + L A++ +    ++I  + VTGT+GK+SV
Sbjct: 70  VTERELPLGEMIA-------QVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSV 122

Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              +Q I    G  S   G     ++    ++  TT   +   + +     +G   +++E
Sbjct: 123 TGIIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTME 182

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAI 245
            SSHGL   RL G+      FTNL  DH+D+H T + Y +AK  LF +L   L K    +
Sbjct: 183 VSSHGLALGRLAGVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVV 242

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFL 303
           + ADDA+S+            V + G + +    + +   ++    +  VE  +  +   
Sbjct: 243 LNADDAWSERYAAM---TPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVK 299

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L GEF +YN L A       G     ++E +E+L  V GR E V +     +++VDYA
Sbjct: 300 MNLLGEFNIYNVLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKVCSE-LPVQMFVDYA 358

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +++E  ++  +    G++I + G GG+RD+ KRP M + A   A+  I+T D+PR E
Sbjct: 359 HTPDAIEKAIEAAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKA-SAAEYVILTTDDPRYE 417

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           D   I  ++  G+    F   G+R EA+R AIE+    D+++ AGKGHE   I+ N  K 
Sbjct: 418 DYNSITGDLAKGMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQIIEN-TKF 476

Query: 482 MSVDCDIIREI 492
              D +I  E 
Sbjct: 477 PHSDAEIAIEA 487


>gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
 gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
          Length = 521

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/510 (29%), Positives = 234/510 (45%), Gaps = 35/510 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + +  PEL    +   +         +  DSR ++ G IF+A+VG + DG  FI  A+ Q
Sbjct: 8   LGQWLPELALGKAASLVPG------SLCLDSRQVKQGDIFIALVGTRADGRQFIANAVEQ 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A+ V +    Q          P++ ++     LS  A R Y        ++ +TGT+
Sbjct: 62  GAAAVFVEADKEWQGVHWI--GEVPVIALEQLTARLSELAGRYYAHPSRELRLVGITGTN 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----------------LTTPSPI 168
           GK++ +  + Q+               T+     D                  LTTP P+
Sbjct: 120 GKTTCSLLLAQLLAGV-SGQGCSAVIGTLGYGLVDKHSLTPIAQQISLLTTTGLTTPDPV 178

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L + L  L + G +  ++E SSH L Q R+ G+      FTNL +DH+DYH    +Y  
Sbjct: 179 ALQRILRQLRTGGASSAAIEVSSHSLQQKRVAGLAFDTAIFTNLTQDHLDYHGDLASYGK 238

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  L    +P    A+   DDA+ K +  +       +     +   ++L+ +    + 
Sbjct: 239 AKAELL--FMPGLKHALFNMDDAWVKALAAKTPAGVSAIGFSLQEPADVYLRDIHLHASG 296

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +     + +F  PL G F + N +         G     VL  +  L   PGR + 
Sbjct: 297 ASAWLVSPWGEAEFHSPLLGLFNLSNLVAVVSAACIQGAPLEQVLALVPHLVAAPGRMQP 356

Query: 349 VGTNS--RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           V  ++  +  ++ VDYAHT ++LE  LK IR   + RI  VFGCGGDRD+ KRP+MG+IA
Sbjct: 357 VVVDADVQEIQVLVDYAHTPDALENTLKAIREHQADRIWTVFGCGGDRDKTKRPLMGRIA 416

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLV 463
             L+D  IVT+DNPRSEDP +I A+I+ G+      +   +R +AI  A++     D+++
Sbjct: 417 EKLSDYVIVTNDNPRSEDPARIAADIVRGLNNPNGCLVLADRAQAIDFAVQQAKPGDLVL 476

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHE   I  +       D    R  L
Sbjct: 477 IAGKGHEDYQIFADQTLP-FSDSQQARLAL 505


>gi|85058422|ref|YP_454124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
 gi|123520084|sp|Q2NVV6|MURE_SODGM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|84778942|dbj|BAE73719.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
          Length = 495

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 168/501 (33%), Positives = 244/501 (48%), Gaps = 17/501 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  ++  EL   L+ +      R + E++ DSR   AG +FVA+ G++ DG  +IPQAIA
Sbjct: 1   MTDRNLREL---LAPWVPNAPGRVLREMTLDSRTAAAGDLFVAVAGHQTDGRRYIPQAIA 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           QG  A+V  +    ++         P++ +   ++ LS  A R Y +  H   +  VTGT
Sbjct: 58  QGVAAVVAQAEGEAEEGEIRELHGVPVIYLHRLQERLSALAGRFYQQPLHALRLTGVTGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++    + Q  Q  G +S  +G     +         TT SPI + + L  L  QG 
Sbjct: 118 NGKTTTTHLLAQWAQLLGETSAVMGTVGNGVLGHIHPADNTTGSPIEVQQLLLQLQRQGA 177

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH     Y  AK RLF EL     
Sbjct: 178 TFAAMEVSSHGLVQHRVSILHFAAAVFTNLSRDHLDYHGDMAQYEAAKWRLFGEL--DVG 235

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             II ADDA  +  +++   A    +S       QG ++   +V        +       
Sbjct: 236 QRIINADDATGRRWLQKLPQAIAVAVSGTLPPERQGDWLCAGEVRYHARGADIPFRSSWG 295

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +      L GEF V N L+A    +A+G     +L+   +L  + GR E      R   +
Sbjct: 296 EGIVHCQLIGEFNVSNLLLALTTLLALGYPLPALLDSASRLQSICGRMEVFHAEDR-PTV 354

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L   R    G++  VFGCGGDRD+GKRP+MG IA   AD  I+TDD
Sbjct: 355 LVDYAHTPDALEKALTAARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQYADRVIITDD 414

Query: 419 NPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR E  + I  +I  G+           R EA+ +AI      D+++VAGKGHE   I+
Sbjct: 415 NPRGEAAQDIINDIKSGLLDAGRAQVISGRAEAVTSAIMQAAPADLVLVAGKGHEDYQII 474

Query: 476 TNGEKKMSVDCDIIREILGLI 496
                  S D   +  +LG++
Sbjct: 475 GKQRLDYS-DRTTVARLLGVM 494


>gi|325844613|ref|ZP_08168256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|325489038|gb|EGC91425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 483

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/494 (28%), Positives = 245/494 (49%), Gaps = 26/494 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   EL+     + ++   ++I  +  DSR +  G +F AI G   DGH +I  A+  G
Sbjct: 3   LKQMSELLG----YTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNG 58

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A A+V            ++        V NT+K L++ +S+ YG+  +N  ++ V GT+G
Sbjct: 59  AIAVVGEE---------SLNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNG 109

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+++   +Q + +  G+ S  IG   +     +    TTP    L + L       + +V
Sbjct: 110 KTTITYLIQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYV 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-- 243
            +E SSHG+ ++R+D +      FTN+  +H+DYH+T + Y   KMR F +    +    
Sbjct: 170 VMEVSSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKM 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFD 301
           AII  DD ++   +        ++L+ G Q K  I  K +     +   ++ V+G+    
Sbjct: 230 AIINCDDEHASSFIS---VTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQ 286

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G++ VYN L       ++G     ++  +E + V+ GRFE++   S G  + +D
Sbjct: 287 MTIPLFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPS-GVTVVID 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH  +++  +L  +  I++G II V G GG+RD+ KR IMG+ A  L+D    T DNPR
Sbjct: 346 YAHNPDAIFQVLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVFFTSDNPR 405

Query: 422 SEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           +EDP  I  +++ G     +    +R +AI  A++     D +V+ GKGHE    + NG+
Sbjct: 406 NEDPLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHEKTQNI-NGK 464

Query: 480 KKMSVDCDIIREIL 493
                D  ++ E++
Sbjct: 465 IVPFNDKIVVEEVI 478


>gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
 gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
          Length = 534

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/526 (30%), Positives = 243/526 (46%), Gaps = 39/526 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-----RKINEVSSDSRHIQAGWIFVAIVGNKED 55
           M L+DL+       +    + P    +     + +  +S++S+ I+ G +F+ + G + D
Sbjct: 8   MLLRDLLTGLEASELEDFKL-PEAIADHSHWTKAVTGLSTNSQAIEPGMVFIGMPGTRVD 66

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F   AI +GA A +VS +      +    S+  +L   N  K  +  A+  Y +  +
Sbjct: 67  GGEFWQSAIEKGAIAALVSPSVLASKPNT---SDALVLTTSNIAKVCAELAASFYAQPAK 123

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
             NI+ VTGT+GK++    ++     +   +  +G   T    + +    TTP  I L  
Sbjct: 124 AMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTLYTRWPGYEKIAVHTTPFSIDLQA 183

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+         V +E SSH L QHR   I      FTNL +DH+DYH+    YF AK  
Sbjct: 184 ELASAHQAECQTVVMEVSSHALAQHRTWSIPFEVAVFTNLTQDHLDYHKDLDDYFEAKAL 243

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF     K   AI+   D Y +++++R          +  +   ++   +         T
Sbjct: 244 LFSPDYLK-GHAIVNQKDPYGQKLIERIGKHKTLTYDITDRSADLYTSDLRYSPIGVSGT 302

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--- 349
           I     +  F  PL G+F + N L A G  + +G+    ++  L +   VPGR E V   
Sbjct: 303 IHTPAGNASFSSPLVGQFNLENLLAAVGAALHLGVSLDQIVVALPEFKGVPGRMERVQIS 362

Query: 350 ------------------GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
                                 +   + VDYAHT +SLE  LK  R    GR+I VFGCG
Sbjct: 363 TGMAAQAVVELDTVAEPDTVAEQDISVIVDYAHTPDSLENALKAARPFIEGRLICVFGCG 422

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIE 447
           GDRD+ KRP MG+IA + +D  IVT DNPR+E PE+I  +++ GI G ++     G+R  
Sbjct: 423 GDRDRSKRPKMGRIAYEQSDFVIVTSDNPRTESPEQILEDVVAGIEGPLDEEQVIGDRAA 482

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AIR+AI      D +V+AGKGHE   I+   EK    D +  R  L
Sbjct: 483 AIRSAILNAQPGDGIVIAGKGHEDYQILGT-EKIHFDDREHARAAL 527


>gi|83648527|ref|YP_436962.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636570|gb|ABC32537.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 508

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 247/501 (49%), Gaps = 18/501 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  +   EL+  ++  P    +  ++++  DSR + +G +FVA  G   +G  ++  A+A
Sbjct: 4   IAQQRLAELLKGIAEVPAAL-DCWLSDIQQDSRKVTSGALFVAAEGVSSNGAQYVEDALA 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A++              + +   + + N R  + + A R +G+  H   ++ VTGT
Sbjct: 63  RGARAVL----LPGTRQHVYEKGDVVFIELANVRPVVGIIAHRFFGQATHRMKVVGVTGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGV 182
           +GKSSV  +V Q+ +  G+S+  +G        +      TTP  + L + L+ L  +G+
Sbjct: 119 NGKSSVTHYVAQMAEGLGMSAAVVGTLGYGRPDSLKATTHTTPDAVSLHRVLAELRDEGI 178

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++E SSH LDQ R  G+       TN+ RDH+DYH T +AY  AK RLF  L     
Sbjct: 179 ELVAMEVSSHALDQDRAAGVNFDVAVLTNITRDHLDYHGTLEAYAEAKKRLF--LSDSVR 236

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKD 299
             +   DD Y     +          S+G Q      +  + +    +     + +    
Sbjct: 237 WKVFNQDDPYGARWAQELQGPKTLTFSIGKQDQTAADVCAEDIHFDADGMSFALDLGATR 296

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L GEF + NAL A     A+ ++   V + L +L  V GR + +    +   + 
Sbjct: 297 EPARLALVGEFNLSNALAACAAMSALKVEPQAVRQQLARLTPVAGRMQRLH-EDKAPTVL 355

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE+ LK  R    GR+  VFGCGGDRD GKRP+MG +A   AD  ++TDDN
Sbjct: 356 VDYAHTPDALEVALKAARRHCPGRLWCVFGCGGDRDPGKRPLMGAVAAQYADEVVLTDDN 415

Query: 420 PRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR EDPE I A+I+ G      F     R +AIR A+E   ++DV+++AGKGHE    + 
Sbjct: 416 PRGEDPESIVAQIVKGAEQGAHFQVVRPRNDAIRFAVEHAAQEDVILLAGKGHEDYQEI- 474

Query: 477 NGEKKMSVDCDIIREILGLIL 497
            G +    D  I R+ L  ++
Sbjct: 475 QGRRLPFSDIAIARDCLASVV 495


>gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 505

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/503 (33%), Positives = 251/503 (49%), Gaps = 19/503 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+    P L N     P    + ++N ++ DSR + AG +F A+ G+  DG  FI
Sbjct: 8   MKLEMLLS---PWLTN--KALPQALSDCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFI 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI  GA AI+  +    QD    ++  T I+ + +  + LS  A R YG+  +   + 
Sbjct: 63  DTAIQAGAVAIIAEADGIAQDGDIVLQDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALY 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++  + Q     G  +  +G T   + +  +    TT S I + + L+ L
Sbjct: 123 AVTGTNGKTTISQLLAQWANLIGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGL 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  +   A  FTNL RDH+DYH   Q Y +AK  LF E 
Sbjct: 183 VEQGADFAAMEVSSHGLVQGRVRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTE- 241

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTI 293
                  II ADDA   E +    +A    +       + G  +   +V        +  
Sbjct: 242 -HDAGVPIINADDAVGAEWLHDLPHAVAVAIEPEAVANHTGLKLWATEVQFSTQGVTIAF 300

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F  PL G F V N L+A    +A     A +L    +L  V GR E V  ++
Sbjct: 301 DSSWGQGKFTAPLVGSFNVTNLLLALATLLATNHSMAELLAKASQLQAVIGRME-VFQDT 359

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M ++A  LAD  
Sbjct: 360 DKAMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQI 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+TDDNPRSEDP+ I A+++ G+          +R  A R A    + QD+++VAGKGHE
Sbjct: 420 ILTDDNPRSEDPKVIVADMLAGLTSPQSATVIHDRATACRHAFTHASHQDIILVAGKGHE 479

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ +     S D + +  +L
Sbjct: 480 DYQILADRTIHYS-DRETVAALL 501


>gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 485

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/495 (28%), Positives = 245/495 (49%), Gaps = 30/495 (6%)

Query: 9   KDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L   + I  +    E  I  ++ +S+ I  G +F AI G   DGH FI +AI + 
Sbjct: 2   KTIKQLCKGVKILQIVGNEEVNIENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEKK 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A  IV             +      L V ++   ++  A+  +    + +  + VTGT+G
Sbjct: 62  ARVIVCQQ------LPEILPKEVTFLKVADSTIAMAQIAANYFDHPSQKLKLVGVTGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++A+ +  + + +      I   +  I+    D + TTP  I L + +  +  +GVTH
Sbjct: 116 KTTIATLLYHLFRNTKHKVGLISTIAIYINEQKIDTKNTTPDVITLNRRMHQMVEEGVTH 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSHG+  HR++G+    G FTNL +DH+D+H+T   Y N K + F+ L  K++ A
Sbjct: 176 CFMEVSSHGIAMHRIEGLSFAGGIFTNLTQDHLDFHKTFAEYRNTKKKFFDTL-KKDAFA 234

Query: 245 IIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +   DD     +++  +AH     + +          K     +    + + +  ++   
Sbjct: 235 LTNIDDKNGNFMLQNTQAHKYNYALRTY------ADFKANILENAFSGLVLRIGQQE--I 286

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+F  YN L      + +G+D   V + + +L  V GRF++  +      + VDY
Sbjct: 287 WTHLIGQFNAYNLLAIYATAVLLGMDKEEVAKQISELKPVSGRFQYFISAGN-ITVIVDY 345

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AHT ++L+ +L+ I++I   S  ++ + GCGG+RD+GKRPIM  IA  ++D  I T DNP
Sbjct: 346 AHTPDALQNVLETIKSIKAPSQHLLTLVGCGGNRDKGKRPIMANIATTMSDKVIFTSDNP 405

Query: 421 RSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R EDP+ I  E+  G+       ++   +R +AI+ A  + +  D++++AGKGHET   V
Sbjct: 406 REEDPQTILKEMEIGVNPDHQSKYMTITDRRQAIKVACNLAHAGDIILLAGKGHETYQEV 465

Query: 476 TNGEKKMSVDCDIIR 490
             G +    D +  +
Sbjct: 466 K-GHRSHFDDLEEAK 479


>gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
 gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
          Length = 509

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/496 (32%), Positives = 254/496 (51%), Gaps = 34/496 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           + +   I  +  DSR I+  ++FVA+ G+  DGH FI +AI  GA+ I+         + 
Sbjct: 15  EGKSFVIKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMIISEKNIDTGQYQ 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
           +   S+   + V+  RK L + AS  YG   + I  + +TGT+GK++ + F++ I +   
Sbjct: 75  SA--SDVTFIQVEGIRKKLGIIASNYYGYPQDKIKIIGITGTNGKTTSSFFLENILE--- 129

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             + +IG T   I     +   TTP  + L K +      G  +  +E SSH L+  R+D
Sbjct: 130 -KTARIGTTGNRILDKEFETVNTTPESLELIKLIDKSVKSGADYFIMEVSSHALEIGRVD 188

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVM 257
            +K  +  FTNL +DH+D+H+T + YFNAK ++F  L          +I  DD Y  ++ 
Sbjct: 189 MLKFDSAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDDEYGAKIY 248

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------------KDFDFLF 304
              +      +SV  +   I    +   +N  +V I+++                + F  
Sbjct: 249 LENNAKNFISISVKNEDADIWGDILNYTNNGMKVKINLKNYLEKYGKNLKNTENVYRFEI 308

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L GE+ +YN L      +++GI+   +++ LE +  VPGRFE +  N    RI VD+AH
Sbjct: 309 DLVGEYNLYNILGCIASALSLGIEMDFIVKKLETMPAVPGRFETIK-NDLDVRIVVDFAH 367

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T + L  + K ++ IT  R+I +FG GGDRD  KRP M + A+  +D  I+T DNPR+E+
Sbjct: 368 TDDGLLNVGKTLKQITDNRVITIFGAGGDRDHEKRPKMAQAAIKFSDFIILTSDNPRTEN 427

Query: 425 PEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           P KI A+I  G+ G       ++   +R  AI+    ML K D L++AGKGHET  I+  
Sbjct: 428 PTKILADIEKGLIGEKFPFNRYLIIADRERAIKYGTRMLEKGDSLLIAGKGHETYQIIGT 487

Query: 478 GEKKMSVDCDIIREIL 493
            EK    D +I++E L
Sbjct: 488 -EKIHFDDREIVKEAL 502


>gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
          Length = 489

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/496 (33%), Positives = 248/496 (50%), Gaps = 20/496 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E +  + +         +  V  DSR + AG +FVA+ G   DG+ FI  AIA GA A
Sbjct: 3   IDEALAGIDVLERGSGSADVTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHGARA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKS 127
           IV  S  +     A      P  +V N R+ L+  A+ ++G HPE++L   AVTGT+GK+
Sbjct: 63  IVTDSREAWAAGGA-----VPFYLVGNGRRALAGVAANVFG-HPEHVLKISAVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A  ++Q+ +        IG   T I    + +  TTP    L    +     G T   
Sbjct: 117 TTAFLLEQMLKSVNRKCLLIGTIETHIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAI 245
           +E SSH L Q R+ G+ +    FTNL +DH+DYH T + YF AK RLFE +  +    A+
Sbjct: 177 MEMSSHALAQERVWGVPVDVAMFTNLTQDHLDYHGTMERYFQAKARLFEGVGAEAPRVAV 236

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D      ++ R  + G  V+S G         KV     + Q              P
Sbjct: 237 VNEDSPAGVWLLTR--DLGPEVMSYGINAGEFRASKVALSAGRTQFLWETPYGAVQIDSP 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+  VYN L A+   +  G+    + +  + LH VPGRF+ V  N  G  + VDYAHT
Sbjct: 295 LTGKVNVYNLLAASCAAMGRGLTLEEIAKAAQGLHQVPGRFQTVP-NDLGITVVVDYAHT 353

Query: 366 SNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            ++L  ++   R +   GR+I +FGCGGDRD+ KRP MG+ A + +D+ ++T+DNPR+E+
Sbjct: 354 DDALRNLIGLARELVGKGRVITLFGCGGDRDKTKRPKMGRAAGEGSDLVVLTNDNPRTEE 413

Query: 425 PEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P  I  E + G+       + + +R  AI  AI+ +   D++++AGKGHE V I+  G  
Sbjct: 414 PGAILDEALAGVRETSVECVVEPDRATAIALAIKAVKGGDIVLLAGKGHEKVQILKTGTV 473

Query: 481 KMSVDCDIIREILGLI 496
               D ++   +L  I
Sbjct: 474 P-FDDAEVAARVLREI 488


>gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
 gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
          Length = 496

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 252/501 (50%), Gaps = 27/501 (5%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL + +    +   +  +I  +  DSR    G +FV I G   D H FIP A   G
Sbjct: 3   KRLEELADLVPGARIAGDKCTEITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++             +     +L V + ++ L L     Y        ++ +TGT+G
Sbjct: 63  ARAVLTERD------KVAVPPGISVLHVPDLQEALDLIVPYFYDYPARAMRVIGITGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  V+ + + +G     IG     +         TTP  I + + L+ + ++G+  
Sbjct: 117 KTTTSYLVRAMLRHAGRRVGLIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDA 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----EELLPK 240
           V +E SSH LDQ R+ GI+     FTNL +DH+DYH+T + Y  AK RLF    E+ + +
Sbjct: 177 VVMEVSSHALDQGRVAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKE 236

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
              AI+ ADDA +K +    H   C +++ G      +  +K+    +  ++TI+  G +
Sbjct: 237 GKTAILNADDAAAKMMRAHTH---CPLITYGVDMPAALTARKIRLGQDGMELTIAYAGAE 293

Query: 300 FD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G F VYN L AAG  +A  + ++ +   L     VPGRFE V    +   +
Sbjct: 294 LPAVQTGITGLFNVYNVLAAAGAALAEQVTASDITAALAAFSGVPGRFELV-RAGQDFSV 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + +E +L+  R +T+GRII VFGCGGDRD+ KRPIMG+IA +L D+ ++T D
Sbjct: 353 IVDYAHTPDGMENVLRTARAVTTGRIITVFGCGGDRDRTKRPIMGRIAAELGDVIVLTSD 412

Query: 419 NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           NPR+EDP  I  E+  G+        + +  +R  AI  A++     D +V+ GKGHET 
Sbjct: 413 NPRTEDPAAILDEVEAGVLPAIGGKPYEKLVDRRTAIFHAVQTARAGDTVVILGKGHETY 472

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ +G      D +   E +
Sbjct: 473 QILKDGTIH-FDDRETAAEAI 492


>gi|255505595|ref|ZP_05347097.3| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
 gi|255266835|gb|EET60040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
          Length = 524

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/505 (28%), Positives = 236/505 (46%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E +           + ++ ++ +DSR ++ G +F  I G   DGH + 
Sbjct: 38  MKLTKLLERVEYECV-------QGNTDIEVTDIVNDSRKVREGCLFFCIKGAVADGHKYA 90

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +   +GA          +      +  +  ++ V ++R  ++L A+  YG   E +  +
Sbjct: 91  AEVAQKGA-------GVLVVQDDVQVPGDVTVIKVADSRYAMALIAAAWYGHPAEKLKVI 143

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ I + +G     IG   + I         TTP    + K  + +
Sbjct: 144 GITGTKGKTTTTYMIKSILEAAGHKVGLIGTIEAIIGDKVIPASNTTPESTTIQKYFAEM 203

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
           +  G   V +E SS GL  HR  G     G FTNL  DHI    H+  + Y   K  LF+
Sbjct: 204 AEAGCDCVVMEVSSQGLMLHRTVGFTFEIGIFTNLEPDHIGPAEHENFEDYLRCKAMLFK 263

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
           +        I  ADDA+ + +++  H         G +  F   +           +   
Sbjct: 264 QC----RHGIFNADDAHLEAILE-GHTCDVETYGFGEKADFRASEAQLVSKPGYLGIAYH 318

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V GK  F     +PG+F +YN+L A  +C   G++   ++  L+K   V GR E +  + 
Sbjct: 319 VTGKRNFFVEIDIPGKFSIYNSLAAIAVCDYFGVEEEKMIAALKKAK-VKGRIEMIKVSD 377

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + +DYAH + SLE +L  ++    GR++ VFGCGG+R + +R  MG+++   AD  
Sbjct: 378 E-FTLMIDYAHNAMSLESLLTTLKEYNPGRLVCVFGCGGNRSRARRFEMGEVSGKYADFT 436

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I+T DNPR E+PE I A+I  GI      +I+  +R EAI  AI      DV+V+AGKGH
Sbjct: 437 IITSDNPRYEEPEAIIADIETGIAKTDGKYIKITDRKEAIAYAIHHGQPGDVIVLAGKGH 496

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    +  G K    +  +I+EIL 
Sbjct: 497 EDYQEIC-GVKHPMDERVLIKEILA 520


>gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
 gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
          Length = 551

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/479 (31%), Positives = 235/479 (49%), Gaps = 21/479 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M   +   N+V+ DSR  +   +FVA  G    G  F+ +AI++GA  +V S        
Sbjct: 23  MGAGDIYFNDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGAVGVVTSQ------- 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
                   P  VV N R   +  +  LYG     +  + VTGT+GK++V+   + +  +S
Sbjct: 76  -VLPNCPLPQCVVANPRAAYAYLSQSLYGHPASRLRMMGVTGTNGKTTVSWMTRALMAKS 134

Query: 141 GLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  +  +G       +  +  + TTP    +A     + S+G TH+++E SSH LDQ R 
Sbjct: 135 GYRTGLLGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLAMELSSHSLDQSRA 194

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             + L     TN+  DH+DYH    +Y  AK R+ + L+       ++ +D  +  +   
Sbjct: 195 AALPLDCAIVTNITHDHLDYHGDFASYREAKARILD-LVKPGGTIALHINDPGAASLASL 253

Query: 260 AHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              A CR++  G         + +    +     +  +G+       + G   + NAL A
Sbjct: 254 VP-AECRLIRYGVNVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENALAA 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +A  +    + E LE+   VPGR E   T      I+VDYAHT ++L   L ++R 
Sbjct: 313 LAAGLAWKVPFLSMAEALEEFRPVPGRMERC-TWGEPFDIFVDYAHTPDALSRALCSLRG 371

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +T GR+I VFG GGDRD  KRP++G+ A   AD+AIVT DNPRSE+PEKI  +I  G+P 
Sbjct: 372 LTRGRLICVFGAGGDRDATKRPLLGRAASQ-ADVAIVTSDNPRSENPEKIIQQICDGVPA 430

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                + + +R  AI+ AIE     D++++AGKGHE+  I+         D  ++RE+L
Sbjct: 431 QQVEVVIEVDRKLAIQHAIEQALPGDMILIAGKGHESEQIIGA-SHLPFDDRRVVRELL 488


>gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM
           273]
 gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/498 (33%), Positives = 251/498 (50%), Gaps = 27/498 (5%)

Query: 11  FPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             E++  +  + +   Q     +  +++DSR ++ G +FVA+ G   DG  FI  AIA+G
Sbjct: 15  LREILRGMGAYEVAAGQTDGVMVRMLTNDSRVVEPGSLFVAVRGFAADGRGFIKDAIARG 74

Query: 68  AEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           A A+V        DF   +  +  P + V + R+ LSL A+  YG   + +  + VTGT+
Sbjct: 75  ASAVVSE------DFPMELALNGPPCIRVPDARRALSLAAAAYYGHPADRLRIVGVTGTN 128

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ A  +  I   +G+S   IG     I         TTP    L +    +   G  
Sbjct: 129 GKTTTARLISSILSMNGISCGYIGTGKAIIGDREIPLERTTPEAHGLHRLFRMMVDGGCR 188

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VS+E SSH L+  R+ GI   A  FTNL  DH+D+H + ++Y  AK +LF++L P    
Sbjct: 189 AVSMEVSSHALELGRVHGIAFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQLAP-GGI 247

Query: 244 AIIYADDAYSKEVMKRA---HNAGCRVLSVGYQGKFIHLKKVCAIHNK----QQVTISV- 295
            I   +D  +  +  R      A C + + G+ G    L     +  +      V +S  
Sbjct: 248 GIFNTEDPMATFMAARVAEEQRACCSLDAAGFGGMRCGLNYGAMVRREGVGSSVVALSFP 307

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           EG   +  F L G F V N L AA     +G+ +  V   L  L  V GR E V      
Sbjct: 308 EGVQPEEEFRLLGRFNVMNMLEAAAAAHQLGVPARDVAASLPGLQGVEGRMEQVEGPGFE 367

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G   VDYAHT ++L   L  +R +    GR++VVFGCGG+RD+ KRP MG+IA+++AD +
Sbjct: 368 GTAIVDYAHTPDALHQSLGTLRELLPPDGRLLVVFGCGGNRDRQKRPEMGRIAIEMADFS 427

Query: 414 IVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           ++T DNPR EDPE I    E   G    +   +R EAIRTA+ ML   D+L+VAGKGHE 
Sbjct: 428 VITSDNPRDEDPEAILDEIEGGMGGGEHLRIPDRAEAIRTAVGMLRSGDILLVAGKGHEC 487

Query: 472 VHIVTNGEKKMSVDCDII 489
               T+G ++   D +++
Sbjct: 488 YQE-THGRREHFSDREVL 504


>gi|209963951|ref|YP_002296866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
 gi|209957417|gb|ACI98053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
          Length = 491

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 195/484 (40%), Positives = 269/484 (55%), Gaps = 13/484 (2%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++       ++ L++     R+  I  +++DSR I  G +F A+ G + DG  FI 
Sbjct: 3   KLSDIMASRTEIAVSALALE----RDPPITALTADSRKIVPGTLFAALPGTRHDGRDFIA 58

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENILA 119
           Q           +SA      +        + ++++   R+ L+L A+  YG  P+ I A
Sbjct: 59  Q------AVAAGASAVLAPKGTVLPPGCEHVALIEDLNPRRRLALLAAAFYGAQPQRIAA 112

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S A F +QI    G  S  +G    ++  F     LTTP P+ L + L+ L+
Sbjct: 113 VTGTNGKTSTAQFTRQIWSGLGHRSGAMGTLGLVADGFPNIETLTTPDPVELHRLLAELA 172

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GVTH+++EASSHGLDQ RLDG+ +    FTNL RDH+DYH+T +AYF AK  LFE ++
Sbjct: 173 RGGVTHLAMEASSHGLDQFRLDGVLVTCAGFTNLTRDHLDYHRTMEAYFQAKATLFERVM 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P+ + A++ AD    + +     +    V+  G +G+ + L     + + QQV I V G 
Sbjct: 233 PQGAVAVLNADTPQFEALAALCRSRKQTVIGYGERGRELALHSARPLPHGQQVEIEVFGT 292

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G FQ++NAL A GL I  G D A     L +L  V GR + V     G  +
Sbjct: 293 RHSLELPLVGNFQLWNALCALGLVIGSGEDPAAATAQLARLEGVRGRLDLVARLKNGAAV 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAHT + LE +LK +R  T GR++ VFG GGDRD GKRP+MG++   LAD AIVTDD
Sbjct: 353 YVDYAHTPDGLETVLKALRPHTVGRLVAVFGAGGDRDPGKRPLMGEVVARLADRAIVTDD 412

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPRSE P  IRA I+   P   E G+R EAI  AI  L + DVLVV GKGHE   IV   
Sbjct: 413 NPRSEVPAVIRAAILAACPDATEIGDRAEAIEAAIAGLEQGDVLVVCGKGHEQGQIVGTE 472

Query: 479 EKKM 482
            +  
Sbjct: 473 VRPF 476


>gi|167760428|ref|ZP_02432555.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
 gi|167661927|gb|EDS06057.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
          Length = 504

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/506 (31%), Positives = 246/506 (48%), Gaps = 37/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E+            E ++ ++ +DSR +  G +FV I G   DGH +I
Sbjct: 17  MKLTQLLERLEYEV-------RQGSDEVEVTQLINDSRKVTEGSVFVCISGAVSDGHKYI 69

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
               A+GA A++V                  ++ VD+TR  L+L ++  +G   E +  +
Sbjct: 70  DDVAAKGAAAVIVERPVDA-------PKGLTVIRVDDTRYALALMSAAYFGYPAEKLKVI 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I +  G     IG   + I   A     TTP    + +  + +
Sbjct: 123 GITGTKGKTTTTYMVKSILEGVGHKVGLIGTIEAIIGDKAIPANNTTPESYTIHQYFAQM 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
           +  G   V +E SS GL  HR  GI+   G FTNLG DHI    H+  + Y   K  LF 
Sbjct: 183 AEAGCDSVVMEVSSQGLMLHRTAGIQFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGILFT 242

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
           +     +  I   DD + ++V K   NA C+V + G+ +   +    V  I     + + 
Sbjct: 243 QC----NLGIANVDDRWYEDVFK---NATCKVETFGFSEKADLRATDVQHISRPGYLGVK 295

Query: 295 VEG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +FD    +PG+F VYN+L A  +C    +    +   L K+  V GR E V  
Sbjct: 296 YQVSGLMNFDVEIDIPGDFSVYNSLTAIAVCRHFDVPVENIKTAL-KVAKVKGRIEMVKV 354

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            S    + +DYAH + SLE +L  +R     RI+ VFGCGG+R + +R  MG++A  L+D
Sbjct: 355 -SDDFTLMIDYAHNAMSLESLLLTLRDYHPQRIVTVFGCGGNRSKTRRYEMGEVAGRLSD 413

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             ++T DNPR E+P+ I  +II G+      +I   +R EAI+  IE     DV+++AGK
Sbjct: 414 FTVITSDNPRFEEPQAIIDDIIVGMKKTDGKYISICDRKEAIKYVIENGQPGDVIILAGK 473

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET   +  G K    +  +IREIL
Sbjct: 474 GHETYQEIK-GVKHDMDERVLIREIL 498


>gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 503

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/502 (32%), Positives = 241/502 (48%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ L  +   + I   +          I  + +DSR I+ G +FV + G   DGH + 
Sbjct: 1   MILQSLTDRLILKKITGSTS-------ADITNLETDSREIRPGGVFVCVPGFHVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAI  GA AIV     S       +  N   + V +TR+ L + A+  +G       ++
Sbjct: 54  EQAIRNGAVAIVAERELS------GLPGNVTHITVPDTRRILPILANAFFGDPTRQLKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V QI   +   +  IG     I +  +    TTP  I L +    +
Sbjct: 108 GITGTNGKTTTTHMVDQILNDARRKTGIIGTLYMKIGNHVEKTLNTTPDTIQLMRYFHTI 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G  +  +E SSHGLD  R+ G       FTNL  DH+D+HQT ++Y N K  LF +L
Sbjct: 168 ISHGGEYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQTMESYRNTKELLFAQL 227

Query: 238 LPKE----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
                     A++ ADDA S    KR      ++++ G Q    +   ++          
Sbjct: 228 GNSNRDMQKKAVLNADDAASSYYAKR---TSAQIITYGIQNQADVRATQIHHSREGCVFH 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    + G   +YNAL A   C+  GI    +   LE+   V GRF+ + T 
Sbjct: 285 AETPWGSSDVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRGSLEQFAGVHGRFQEIQTG 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            R G + VDYAH  + L+  L++ + ITSG++I V GC G+RD+ KRPIM  IA   +D 
Sbjct: 345 RRFG-VVVDYAHNPDGLKATLQSAKAITSGKMICVMGCRGERDRSKRPIMADIAASYSDY 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            + T DNP SEDPE+I AE++ G+       +    +R EAI+ A+EM   +D +++ G+
Sbjct: 404 VLFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGR 463

Query: 468 GHETVHIVTNGEKKMSVDCDII 489
           GHET + V     +   D DI+
Sbjct: 464 GHETRY-VAGSRIESFSDEDIV 484


>gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
 gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
          Length = 483

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/490 (31%), Positives = 241/490 (49%), Gaps = 26/490 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL++ L       R+ +I  V+SDSR ++ G +FV I G + DGH +  +A   GA AI+
Sbjct: 5   ELLDGLDA-ARPDRDCEITGVTSDSRQVEPGTLFVCIRGTRADGHDYAVKAAEAGAAAIL 63

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
              A  L++           +V  +T     +     YG     +  + VTGT+GK++V+
Sbjct: 64  CERAIGLEN----------EIVCHDTHYAYGIVCGNWYGNPARRLRLVGVTGTNGKTTVS 113

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V+ I + +G  +  IG     I       + TTP P+ L   L+ ++  G  +V +E 
Sbjct: 114 YMVKHILESAGHQTGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARMADAGCEYVVMEC 173

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH LDQ RL G++  +  FTNL +DH+DYH   ++Y++AK +LF         A +  D
Sbjct: 174 SSHALDQQRLAGLRFASVGFTNLTQDHLDYHGDMESYYHAKKKLFS----MCDAAAVNMD 229

Query: 250 DAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DAY + +     H       S          K +    +  +  I  +G       P+PG
Sbjct: 230 DAYGERLAAEVRHICPVTTFSTVSDAADFTAKDIRPAPDSSRFMIVGKGAIARVRLPIPG 289

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F V NA+ AA +C+A+G+      + L     V GR E + T +    +  DYAH+ + 
Sbjct: 290 DFSVANAMTAAVMCMALGLTLEQAAQGLNTCQGVVGRIEVLPTGTD-YVVIRDYAHSPDG 348

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE I+  ++    GR++ +FGC G+RD+ KR  M +I   L+D  I+T DNPR ED  +I
Sbjct: 349 LEKIITTMKKFARGRVVTLFGCAGNRDRTKRKKMAEIVARLSDFVILTSDNPRDEDEMQI 408

Query: 429 RAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             +   G+       +    +R  AI  A+    K DVL++AGKGHE   ++ +GE    
Sbjct: 409 IEDAKPGLLEHPDTPYEIIPDRYAAIEWALGHAKKDDVLILAGKGHEDYQVL-HGETICF 467

Query: 484 VDCDIIREIL 493
            +  I+ E+L
Sbjct: 468 DERQIVLELL 477


>gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
 gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
          Length = 487

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/507 (30%), Positives = 253/507 (49%), Gaps = 39/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         +++  + +  +       +  +  DSR ++   +FVAI G   DGH F
Sbjct: 1   MKL-------LKDILFGVGLTAVSGSTNLMVGTLCFDSRKVKLDDVFVAIKGTLTDGHKF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I +AI  GA  IV  +          + +    + VD+  K L++ AS  Y    +   +
Sbjct: 54  IEKAIDSGAVCIVCET------MPEQLVNGVTYVEVDSGNKALAIMASNYYDNPSKNLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKA 173
           + +TGT+GK++++S + Q+ +++G   F++G  STI     D       TTP  + + + 
Sbjct: 108 VGITGTNGKTTISSLLYQLFKKAG---FKVGLISTIKIMVDDKEYATSHTTPDAMTINEH 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  ++ +GV    +E SSHG+ Q R +G+      FTNL  DH+DYH+T   Y + K  L
Sbjct: 165 LDLMNEEGVEFCFMEVSSHGIHQKRTEGLVFEGAIFTNLTHDHLDYHKTFAEYRDTKKSL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F++L PK + A+   DD      +    N   R  +   +    +  ++       Q+  
Sbjct: 225 FDKL-PKNAFALTNVDDKNG---LVMLQNTAARKFTYALKSYADYRAQILENQFDGQL-- 278

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++  D +    L G F  YN L        +G++    L  L +L  V GRF++  +  
Sbjct: 279 -LKVDDDELWTKLIGHFNAYNVLAIYATADLLGLEKLETLRLLSELDNVDGRFQYYISKE 337

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +     VDYAHT ++L+ +L+ I T+ +G   +I V GCGGDRD+ KRP+MG IA  +++
Sbjct: 338 K-ITAIVDYAHTPDALKNVLETIGTLRTGNENVITVVGCGGDRDKSKRPVMGNIASQMSN 396

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I T DNPR+E P  I  E+  G     +   +   NR +AI+TA ++    D+++VAG
Sbjct: 397 KTIFTSDNPRTESPSVIIEEMEAGVEPQNVKKILSIENREQAIKTACQLATANDIILVAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHET    TNG++    D  II ++L
Sbjct: 457 KGHETYQE-TNGKRIDFDDFKIITDVL 482


>gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
 gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
          Length = 488

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 252/501 (50%), Gaps = 31/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   + +   +          IN +  DSR +Q   +F+AI G+  DGH +I  
Sbjct: 4   LKDILYKVNMKAVTGDTG-------VTINNIHFDSRKVQLNDVFIAIRGSISDGHDYIKN 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A  QGA AIV             + +    + V++T++ L+  ++  Y    E +  + V
Sbjct: 57  AENQGALAIVCEK------IPDEVINGVTYIEVEDTKRALAYISANYYDNPSEKLKLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++A+ +  +  ++G     +      + +       TTP  I +   L  ++ 
Sbjct: 111 TGTNGKTTIATLLYDLFTKAGFKCGLLSTVKVMVGNDEHTAIRTTPDSITINSYLKDMND 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV    +E SSHG+DQHR   +K   G FTNL  DH+DYH+    Y + K R F+EL P
Sbjct: 171 VGVEFCFMEVSSHGIDQHRTTALKFEGGIFTNLSHDHLDYHKDFAEYRDVKKRFFDEL-P 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + A+   DD   + ++    N   +  +   +  F   K     +N   + + V+ ++
Sbjct: 230 ASAFALTNVDDKNGEIML---QNTKAKKHTYALKS-FADYKAQILENNFTGLLLKVDDQE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F  YN L    +   +G+ +  +L  + +L+ V GRF++V +        
Sbjct: 286 LW--TKLIGNFNAYNVLAIYAMADLLGLKTLEILRIISELNSVSGRFQYVISEKEKITAI 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I +I +    +I V GCGGDRD  KRP MG IA  L+   + T 
Sbjct: 344 VDYAHTPDALKNVLETINSIRTRNEELITVVGCGGDRDTTKRPKMGHIASALSTKVVFTS 403

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+EDP+KI  E+  G+        +   NR +AI+TA +M  + D++++AGKGHET 
Sbjct: 404 DNPRTEDPDKIIEEVEGGVEPQNFKKTMSVTNRKQAIKTACQMAGQNDIILIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V NGE+    D  I+ E L
Sbjct: 464 QEV-NGERVDFDDLKIVNEFL 483


>gi|124515893|gb|EAY57402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum rubarum]
          Length = 509

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/481 (33%), Positives = 240/481 (49%), Gaps = 18/481 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-----SLQDFS 83
           K+  +S DSR ++ G +F+   G       F+ +A+ +GA  +V          S    S
Sbjct: 28  KVLSLSDDSRQVENGALFLIRPGEGFR-WEFVDEALDRGASYLVADRKAFPEIDSRPALS 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
           + IR +  + +V+N  + +   AS  +G       ++ VTGT+GK++ +   + +C+  G
Sbjct: 87  SRIRESAGLSLVENLPRAVGQLASSWWGFPSSFLKVIGVTGTNGKTTSSFLTRSVCRAGG 146

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L    IG     +     +   TTP  I +    +     G+  VS+E SSH LDQ RL 
Sbjct: 147 LPCGLIGTVVFDVGHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEVSSHALDQDRLA 206

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMK 258
           G       FTNL RDH+DYH+T +AYF AK +L     P  S   A+++  D Y   + K
Sbjct: 207 GTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGDEYGARLAK 266

Query: 259 RAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                G RVL+ G     +    +V    +  + T+     +      L G + + N L 
Sbjct: 267 ELERDGRRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNILG 326

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A G   A+G+    + E +  L  VPGRFE V + + G  + VDYAHT ++L  +L  +R
Sbjct: 327 AVGCGEALGLSMEKIAEGIHSLPGVPGRFERVDSPT-GFSVIVDYAHTDDALSNLLSAVR 385

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +T G++I VFGCGGDRD+GKRP MG +A  L+D  ++T DNPR+E+PE I  EI  G+ 
Sbjct: 386 PVTRGKVITVFGCGGDRDRGKRPRMGSVAGRLSDFVVLTSDNPRTENPESILDEIEPGLR 445

Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                ++   +R  AI  AI      D +V+AGKGHE   I+   +K    D +I R  L
Sbjct: 446 ETGTPYVRVSDRKSAIFEAIRRARPGDAVVIAGKGHENYQILGK-QKIHFDDREIARLAL 504

Query: 494 G 494
            
Sbjct: 505 A 505


>gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 489

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 222/474 (46%), Gaps = 24/474 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +++ DSR +Q   +F+ I G   DGH +  +A+  GA  IV      L          
Sbjct: 23  ITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGATVIVTERLLQLD-------GE 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++V NT + L + A++ +    ++I+   VTGT+GK+SV+  +  I    G  S   
Sbjct: 76  IAQVIVKNTTRTLGILAAKFFDYPSKDIMMIGVTGTNGKTSVSGIIHNILIGLGEKSALS 135

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     ++    ++  TT   +   + +    S+G   + +E SSHGL   RL G+    
Sbjct: 136 GTIGFNLNGVLYESANTTSDSLNTQQMIFRAKSEGCRAMVMEVSSHGLALGRLAGVDYDV 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNA 263
             FTNL  DH+D+H T + Y N K  LF +L   L K    ++ ADD +S+     A   
Sbjct: 196 AVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLNADDPWSER---YAGMT 252

Query: 264 GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              + + G +             +   Q  +      F     L GEF +YN L A  + 
Sbjct: 253 PYPIWTYGLHNNAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLGEFNIYNVLAATAVF 312

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
            A G    +++E +E L  V GR E +  +    +I++DYAHT +++E  +         
Sbjct: 313 YARGFPIEVIIEQIEMLPPVKGRMEKID-SDLPIQIFIDYAHTPDAIEKAINAAMPYKKP 371

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G GG RD+ KRP M + A  +AD  I+T D+PR E+ + I  ++  G+    
Sbjct: 372 ENKLIFLVGTGGGRDKTKRPTMAEKA-SVADYVILTTDDPRYEEFDSITGDLAKGMKHKN 430

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +   G+R EA+R A+ + N  D+++ AGKGHE   I+ N  K    D  I  E 
Sbjct: 431 YACIGDRAEAVRHAVSVANPGDIIIFAGKGHEDYQIIEN-TKYPHSDAKIAIEA 483


>gi|161504755|ref|YP_001571867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866102|gb|ABX22725.1| hypothetical protein SARI_02878 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 495

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 248/495 (50%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEARDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFSAAGK-ATVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG+I
Sbjct: 481 YS-DRVTAARLLGVI 494


>gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
 gi|149752172|gb|EDM62103.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
          Length = 487

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/507 (30%), Positives = 247/507 (48%), Gaps = 39/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         +L+ +L    +Q  ++ ++ E+ +DSR +  G +FV I G   DGH +
Sbjct: 1   MKLT--------QLLERLEYEVVQGDDQIEVTELINDSRKVTEGSVFVCISGAVSDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + Q   +GA A++V                  ++ V+NTR  L+L ++  +G   E +  
Sbjct: 53  VQQVAEKGAAAVIVEKDVEA-------PEGLTVIKVENTRYALALTSAAYFGYPAEKLKV 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT GK++    V+ I +  G+    IG   + I   +     TTP    + K  S 
Sbjct: 106 IGITGTKGKTTTTYMVKSILEEVGIKVGLIGTIEAIIGDKSIPANNTTPESYTIQKYFSE 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +  +G   V +E SS GL   R  GI    G FTNLG DHI    H+    Y   K  LF
Sbjct: 166 MVEEGCECVVMEVSSQGLKLDRTAGIPFEIGIFTNLGEDHIGPNEHKDFNEYKYCKSLLF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
           ++            DD + +++ K A    C+V + G+ +   I    V  I     + +
Sbjct: 226 KQCKIGIG----NVDDKWFEDIFKDAT---CKVETFGFSEKADIRATDVKHISRPGYLGV 278

Query: 294 SVEG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   DFD    +PG+F VYN+L A  +C   G+    + + L K+  V GR E + 
Sbjct: 279 QYHVAGLMDFDVEIDIPGDFSVYNSLTAIAVCRHFGVPVEDIKKAL-KVARVKGRIEMIK 337

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             S    + +DYAH + +LE +L  +R     RI+ VFGCGG+R + +R  MG+++  L+
Sbjct: 338 V-SDDFTLMIDYAHNAMALESLLDTLRDYHPERIVTVFGCGGNRSKTRRYEMGEVSGKLS 396

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D  I+T DNPR E+P+ I  +I+ G+      +I   +R EAI+ AIE     DV+++AG
Sbjct: 397 DFTIITSDNPRFEEPQAIIDDIVVGMKKTDGKYITICDRKEAIKYAIEHGQPGDVIILAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHET   +  G K    +  +I+E+L
Sbjct: 457 KGHETYQEIK-GVKHDMDERVLIKEVL 482


>gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS185]
 gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS185]
          Length = 499

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/508 (29%), Positives = 238/508 (46%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+                    +  N+++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWL-----------HYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDF----SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
            +A+  GA A++V +  + Q      S  +     I V   +R+  ++ A R    H   
Sbjct: 51  EKALDLGAAAVLVHTDDADQHGKVLHSDNVEHGVQIYVFQLSRQVSAIAAQRYPLAHQSA 110

Query: 116 ----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYL 170
                ++ +TGT+GK+S +  + Q+    G  +  +G     +     D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTTDAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHN 287
             LF          ++  DDA     +    +   ++      G+Q    + K       
Sbjct: 231 QSLFR--FSTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQ 288

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+     +     PL G F + N L A       G D   + E ++ L  V GR E
Sbjct: 289 GVSATLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRME 348

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              T +    + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MGK A 
Sbjct: 349 RFTT-ANNITLVVDYAHTPDAIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAE 407

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++
Sbjct: 408 QYADRIMVTSDNARSEDPAQIITDIIQGLTLSQQALTQVDRIAAIKEVVALAKPGDVILL 467

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AGKGHET      G +    +  + R++
Sbjct: 468 AGKGHETYQE-AAGVRHDYDERALARQL 494


>gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 488

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/506 (32%), Positives = 251/506 (49%), Gaps = 32/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DLI K   ++++ L       R R I+ + SDSR   AG ++VA+ G   DGH FI
Sbjct: 3   MNLEDLIKKV--QILDILGD-----RNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        ++A     F   I ++   + V+++ K L   AS  +G   E +  +
Sbjct: 56  DA------AVAQGAAAVVCNAFPENIDTDITYIKVEDSAKALGQLASGFFGNPSEKLNLI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+SV + +  + +  G  S  I      I+     +  TTP  I L K L+  
Sbjct: 110 GITGTNGKTSVTTILYDLFKYLGFKSALISTVEYRIADKVLPSTHTTPDVITLNKILAEA 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSHG+ Q R + +      FTN+  DH+DYH+T   Y   K   F+ L
Sbjct: 170 VEAGCEYAFMEVSSHGIHQKRTERLHFKIAGFTNISHDHLDYHKTFSEYLKTKQSFFDGL 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P ++ AI   DD   K ++    N      S   +    +  K         + ++ +G
Sbjct: 230 NP-DAVAITNLDDKNGKIML---QNTKATRKSYALKTMADYHGKTTETDFNGML-LNFDG 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+F     L G F VYN L+A  + +  G  S  VL+ +  L  V GRFE + ++  G  
Sbjct: 285 KEFW--TTLTGRFNVYNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFETLKSDG-GIF 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +DYAHT ++L+ IL +I  I +    +I VFGCGG+RDQ KRP MGKI+   + + I+
Sbjct: 342 FVIDYAHTPDALDNILDSINEIRTKNERLITVFGCGGERDQTKRPEMGKISTRKSTLTII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPRSE+P  I  EI  G+       +    +R +AI+ AI+    +D+++VAGKGHE
Sbjct: 402 TSDNPRSENPGDIIKEIEAGVEPQYYSKYTSIPDRRDAIKMAIKFAEPKDIVLVAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496
               + NG+K    D + I E+  L+
Sbjct: 462 NYQEI-NGQKVHFDDKETIVELTRLM 486


>gi|113955311|ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
 gi|123031834|sp|Q0ICH2|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
          Length = 503

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/486 (31%), Positives = 238/486 (48%), Gaps = 17/486 (3%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P    +  I  ++ DSR +  G +F+ + G + DG  F P+A+  GA A+++ SA +  
Sbjct: 16  VPQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALVDGASAVLIGSAAAA- 74

Query: 81  DFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137
             +     +  +LVV +   ++    A+  +    E   ++ VTGT+GK++    ++ + 
Sbjct: 75  --TLPPEQSDAVLVVPDPVARWAGELAAAFWNHPSERIGLIGVTGTNGKTTTTHLIEHLS 132

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S   G         +     TT     L   L+   + G    ++E SSH LDQ
Sbjct: 133 SACGRPSALFGTLLNRWPGHSVTATHTTAVADRLQAQLAEAYAAGAQLTAMEVSSHALDQ 192

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI--IYADDAYSK 254
           HR+ G +     FTNL +DH+DYH+T  +YF AK RLF   L  +  A   +  DD + K
Sbjct: 193 HRVAGCRFSGAVFTNLTQDHLDYHETMASYFEAKARLFAPPLVADQGAQFVVNIDDPWGK 252

Query: 255 EVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + +R  +   R  LS G     + +  +    +  +  +     +  F  PL G F V 
Sbjct: 253 HLAERLGDRCWRSSLSEGSAHAELTMSDLVMGSSGVEGRLLSPLGEGSFQSPLLGRFNVM 312

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLE 370
           N L A G+ +  G+    +LE +     VPGR E V  + +GG    + VDYAHT + L 
Sbjct: 313 NLLQAVGVLLQQGLPLEALLEAISTFRGVPGRMERVVVDGKGGELPTVLVDYAHTPDGLS 372

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L   R    G++I VFGCGGDRD+GKR  M  IA +LAD  +VT DNPR+EDP++I  
Sbjct: 373 SALNACRPFADGKLICVFGCGGDRDRGKRSQMAAIAAELADAVVVTSDNPRTEDPQQILN 432

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +++ GIP         +R EAI  AI+     D++++AGKGHE   I+   +K    D +
Sbjct: 433 DVVEGIPSGTALTVMLDRAEAIAGAIKDAGSHDLVLIAGKGHEDYQILGT-QKVHFDDRE 491

Query: 488 IIREIL 493
              + L
Sbjct: 492 QALKAL 497


>gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
 gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea]
 gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
          Length = 492

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/504 (30%), Positives = 238/504 (47%), Gaps = 25/504 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+                   E   N +S DSR I  G +F+A+ G+  DG  FI
Sbjct: 1   MQLNDLLAPWL----------HYSGSE-SFNGMSLDSRAITVGDLFIAVPGHLVDGRKFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPE--NI 117
             A  QGA A +V +    +       ++    ++     + LS   ++ Y   P+   +
Sbjct: 50  QAAFEQGAVAALVHTDEPTEHGQVLSEASASLQILFFQLNQELSAIGAQAYPLAPQRLKL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S+   + Q+    G  +  +G     +     ++  TT  PI +A  L  
Sbjct: 110 IGVTGTNGKTSITQLMAQLVALQGKQASLMGTLGNGLWGDLVESGNTTADPITIAAQLQD 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G    ++E SSHGL Q+R+  +      FTNL RDH+DYH T QAY +AK RLF+ 
Sbjct: 170 FDLAGADLCAMEVSSHGLIQNRVAAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFK- 228

Query: 237 LLPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                  ++I  DD   ++ +   + A + G  + S       I+ +     H      +
Sbjct: 229 -FSSLQSSLINLDDEVGRQWLSEEQEAKHLGFSICSAHADAASIYTQDNHLHHQGVMAML 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                      PL G F + N + A G    IG D   ++  +  L  V GR E   T +
Sbjct: 288 VWPEGRAKLASPLLGSFNLSNLVAALGALYLIGYDMQALVASVPLLTPVAGRMERFTT-A 346

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  I VDYAH+ +++E  LK +R    G++  +FGCGGDRD+GKRP+M + A   AD  
Sbjct: 347 NGVTIVVDYAHSPDAIEQALKALRGHCEGQLWCLFGCGGDRDKGKRPLMAQAAETYADKV 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++T DN RSE PE I  +I+ G+      + + NR +AIR  + +    D++++AGKGHE
Sbjct: 407 MITSDNVRSESPEAIIEDILVGLEAPERVLTQVNREQAIRQVVALAKPGDLVLLAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T   V  G +    +  + + + G
Sbjct: 467 TYQEVA-GVRFEYDERALAKSLAG 489


>gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
 gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
          Length = 491

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/502 (29%), Positives = 235/502 (46%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+   FP              E+   +++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 1   MLLRELLAPWFPY-----------AGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117
            +A+AQGA A++V +    +     +      +      K +S  A+  Y     H   I
Sbjct: 50  DKALAQGATAVLVHTDNPQEQGKVIVAEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGI 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+S +    Q+       +  +G     +     D+  TT   I L + L  
Sbjct: 110 VGITGTNGKTSTSQLCAQLVTLLSGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHE 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +++GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  AK  LF  
Sbjct: 170 FANKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRF 229

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTI 293
              +    ++  DD      +    N   ++       ++    + K V       Q T+
Sbjct: 230 DSLRHG--LLNLDDPIGGAWLAELKNVPAKIWGFSIEAHKAAAFYTKNVRFNDQGVQATL 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + D   PL G F + N L A       G+D   +   +  L  V GR E   T  
Sbjct: 288 VWPEGEIDISSPLLGAFNLSNLLAALSALYLQGMDMRALAAKVPYLVPVAGRMERFTTAD 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  
Sbjct: 348 N-ITLVVDYAHTPDAIEQALNALRRHCAGVLWCVFGCGGDRDKGKRPLMGQAAEQFADRI 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      DV+++AGKGHE
Sbjct: 407 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKQVVAQAKSGDVILLAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G +    +  + R++
Sbjct: 467 TYQE-AAGVRHDYDERALARQL 487


>gi|52841152|ref|YP_094951.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54296937|ref|YP_123306.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
 gi|52628263|gb|AAU27004.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750722|emb|CAH12129.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
          Length = 483

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/504 (31%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDF-PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+      ++I           +  ++++ +DSR ++ G +FVA  G   DG L+
Sbjct: 1   MKLTQLLEPWIKRDII-----------DGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLY 49

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
           I     +   +  V+  Y   +    I   +  P + +    + L   A R +    +  
Sbjct: 50  I----EKAVASGAVAVVYEPNNLPQGITLPTGIPCIAIPQLAEKLGEIAKRFFNNPSQFL 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKAL 174
            +  VTGT+GK+++A  + Q     G  S  IG          +    TTP  + L + +
Sbjct: 106 GLTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGKVDALKPLENTTPDALCLQRLM 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G+  V +E SSH L QHR+D ++     FTNL  DH+DYHQT QAY  AK RLF
Sbjct: 166 HQYKEGGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTI 293
           E    +   AII  DD + +++M        + ++ G +Q   +   +        ++ +
Sbjct: 226 ER--AELQWAIINQDDDF-QDLMSNVLKTHVKKVTYGMHQNCDVKALQWNMDITGTEIEV 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                         G+F +YN+L      +A G +   V++ + +L   PGR E V   +
Sbjct: 283 KSPWGHHLLKIKALGKFNIYNSLAVYSSLLASGYNPEKVVQVMAELKAAPGRMEIV---A 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT ++LE +L  ++ I  GR+ VVFGCGGDRD+ KRPIMGK A   AD  
Sbjct: 340 QSPYVLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNI 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++T DNPRSEDPE I  EI  GIP      +  NR EAI  A+      D++++AGKGHE
Sbjct: 400 VITSDNPRSEDPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           +   + N  K +  D +++R ++ 
Sbjct: 460 SYQQIGN-TKHVFSDQEVVRRLMN 482


>gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 493

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/491 (29%), Positives = 237/491 (48%), Gaps = 24/491 (4%)

Query: 13  ELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL++ L +  +      ++ ++  DSR +Q   +FV I G   DGH +  +A+  GA  +
Sbjct: 10  ELLSALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIV 69

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           V      L             ++V +T + + L A++ +    ++I  + VTGT+GK+SV
Sbjct: 70  VTERELPL-------GETIAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSV 122

Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              +Q I    G  S   G     ++    ++  TT   +   + +     +G   +++E
Sbjct: 123 TGIIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTME 182

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAI 245
            SSHGL   RL G+      FTNL  DH+D+H T + Y +AK  LF +L   L K    +
Sbjct: 183 VSSHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVV 242

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFL 303
           + ADDA+S+            V + G + +    + +   ++    +  VE  +  +   
Sbjct: 243 LNADDAWSERYAAM---TPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVK 299

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L GEF +YN L A       G     ++E +E+L  V GR E V  +    +++VDYA
Sbjct: 300 MNLLGEFNIYNVLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKV-CSDLPVQMFVDYA 358

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +++E  ++  +    G++I + G GG+RD+ KRP M + A   A+  I+T D+PR E
Sbjct: 359 HTPDAIEKAIEAAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKA-SAAEYVILTTDDPRYE 417

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           D   I  ++  G+    F   G+R EA+R AIE+    D+++ AGKGHE   I+ N  K 
Sbjct: 418 DYNSITGDLAKGMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQIIEN-TKF 476

Query: 482 MSVDCDIIREI 492
              D +I  E 
Sbjct: 477 PHSDAEIAIEA 487


>gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter heparinus DSM 2366]
 gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM
           2366]
          Length = 485

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/506 (29%), Positives = 246/506 (48%), Gaps = 32/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQD++Y     + +Q+ +       RK++ +  DSR +     F AI G   DGH +I
Sbjct: 1   MQLQDILYGV--TITDQIGVT-----NRKVSALVFDSRQVIKDAAFFAIKGTLADGHTYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
              ++ GA  ++           A I  +   + V N+   L   A+  YG   E +   
Sbjct: 54  AATVSAGAGVVICE------VLPAEIAPDVTYIQVANSAVALGRMAANFYGNPSEKLQLT 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++A+ + ++ +  G     I      I+        TTP P+ L   L  +
Sbjct: 108 GITGTNGKTTIATLLFKLFRALGYKVGLISTVENHINDEVIPATHTTPDPLALNALLQDM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + QHR++G+    G F+N+  DH+D+H+T   Y  AK   F+ L
Sbjct: 168 VDAGCDYCFMEVSSHAVVQHRIEGLSFAGGVFSNITHDHLDFHKTFDQYIKAKKAFFDAL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P  + A+   DD     +++    A     +   +       KV     K    + ++ 
Sbjct: 228 -PASAFALTNLDDKNGMVMLQNTRAAKK---TYALKQLADFKAKVIENSFKG---LHLDI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D D  F L G F  YN L   G  + +G +   VL  L  L    GRF+++ ++     
Sbjct: 281 DDADVFFKLVGSFNAYNLLAVYGTAVLLGQEKLDVLTLLSNLTGAEGRFDYITSSQHIIG 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           I  DYAHT ++++ +L  I+ I  G  ++I + GCGGDRD+ KRPIM ++A D +D  I+
Sbjct: 341 IV-DYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPIMAQVACDWSDKVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+E+P+ I  E+  G+        +   +R EAI+TA  +    D++++AGKGHE
Sbjct: 400 TSDNPRTENPQTIVEEMEKGVSPTNKRKTLSIVDRKEAIKTACHLARPGDIILLAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496
               + NG +    D +I+ E L LI
Sbjct: 460 KYQEI-NGVRYHFDDKEILTEQLNLI 484


>gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 492

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/505 (30%), Positives = 244/505 (48%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L         N  S      +E  +  ++++S+ +  G +F+A  G   DG+ +I
Sbjct: 1   MKLKELFR-------NIESCQFKGSQEVLLTGLTANSKSLSPGNLFIAKKGKMFDGNSYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA AI+        D           ++  N  +  S+ A   Y    E +  +
Sbjct: 54  KEAIQSGACAILT-------DLFDPCLKKVVQIIHPNPNEIESILARDYYQNSSEELFMV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++  ++ +          IG    I  S       TTP  I   K L  +
Sbjct: 107 GITGTNGKTTISFIIKYLLDLFHGPCGLIGTIEYIVGSHRYQATRTTPDVIENHKMLYEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S  G     +E +SH L Q R++ I      F+NL  DH+DYH T + Y  AK  LFE L
Sbjct: 167 SLSGTKSAVMEVTSHALIQKRVEYIDFDVAVFSNLTLDHLDYHLTMENYCAAKNCLFEGL 226

Query: 238 ------LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290
                    E  AI+  DD + ++++K         L+ G      +    +        
Sbjct: 227 GEQPTKKRNEKWAIVNIDDPWCEQIVK---GCQAHRLTYGIDKPADLQASHIKLSSQGTS 283

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + ++ +G+  +  +PL G F +YN L A G+ +   I    ++E +  +  V GR E V 
Sbjct: 284 INLTYQGQTIECFWPLLGRFNIYNCLAAIGVLLTQNIPLKEIVEKMACIPNVKGRLEKV- 342

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N+    IY+D+AHT ++L  +LK +  I  GR++ +FGCGGDRD  KRP M   +   +
Sbjct: 343 LNNLELDIYIDFAHTDDALSNVLKTLSEIKKGRLLTIFGCGGDRDPSKRPKMAIASEQYS 402

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D++IVT DNPRSE+P  I  EI+ G      FI + +R  AI+ AIE+ +  D++++AGK
Sbjct: 403 DLSIVTSDNPRSENPISICQEIVTGFVNPNSFIVEIDRRAAIQKAIEIASPGDMILIAGK 462

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHET  I+++   +   D  +  EI
Sbjct: 463 GHETYQILSHQIIE-FDDAKVAAEI 486


>gi|302386509|ref|YP_003822331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
 gi|302197137|gb|ADL04708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
          Length = 491

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/497 (29%), Positives = 226/497 (45%), Gaps = 32/497 (6%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E +  L+   +Q   + ++ EV  DSR  + G +FV + G + D H FIP+ +  G +
Sbjct: 3   FKEWLKDLTYEVLQGSLDVEVEEVIYDSRKARNGAVFVCMKGTRTDSHEFIPEVVNAGVQ 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV     L D           ++V N R+ L+L ++  +G   E ++ +  T  K   
Sbjct: 63  ILVVERKTELPD-------GVTAILVHNAREALALLSAARFGYPAEKMVTIGVTGTKGKT 115

Query: 130 A--SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                ++ + +  G     IG T   I         TTP    L +A  +++  G  ++ 
Sbjct: 116 TTTHMIKTVLEACGKKVGMIGTTGIVIGQEVTPTVNTTPESYELHQAFCHMAEAGCEYMV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS     HR+DGI    G FTN+  DHI  D H   + Y   K R+F          
Sbjct: 176 MEVSSQAFKMHRVDGISFDYGLFTNISPDHIGPDEHADFEEYLYYKSRIFS----CCKVG 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEG-KD 299
           I+  DD +  EV+K A    CR+ S   + K    K     +  Q     +   ++G   
Sbjct: 232 IMNGDDEHWAEVVKDAT---CRLYSFSMEKKSTDFKAEAIRYIAQPDFVGLEFDIKGISQ 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG F V NAL A  +   +G+    +   LE L+ V GR E V ++     + 
Sbjct: 289 LSVRVNIPGRFNVANALAAVSVLSFLGLPKENICHGLEHLN-VNGRMEIVYSSET-CTVI 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH + S+E +L  +R     R++ VFGCGG+R + +R  MG  A  LAD  I+T DN
Sbjct: 347 VDYAHNAVSMESLLSTLRDYRPKRLVCVFGCGGNRSKDRRITMGDSAGRLADFTIITADN 406

Query: 420 PRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            R E  E I A+I   +      FIE  +R EAIR +I      D++ + GKGHE    +
Sbjct: 407 SRYEKTEDIIADIRKSLEKTGGKFIEIPDRREAIRYSITHAQPGDMIAIIGKGHENYQEM 466

Query: 476 TNGEKKMSVDCDIIREI 492
            NG +    D + I + 
Sbjct: 467 -NGVRYHFSDQEEILKA 482


>gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 487

 Score =  368 bits (946), Expect = e-99,   Method: Composition-based stats.
 Identities = 152/499 (30%), Positives = 241/499 (48%), Gaps = 23/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+          +        +  ++ +  DSR +  G +FVAI G + DG  +I
Sbjct: 1   MKLAELLT---------MLPTSFSVPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI    +A   +        +   R    ++     R+ LS  A   +G   E   ++
Sbjct: 52  DAAI----DAGAAAIIAEAPGMAVEQRRGVVVIGFSGVREHLSRIAGNFFGHPSEKMNLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   + Q+ +  G+ +  IG T + +       R TTP  + + + L+ L
Sbjct: 108 GVTGTNGKTSVTHIMAQLAKALGMEAAVIGTTGSGLIGRLLPERHTTPDAVTVQQRLATL 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G   V++E SSH L Q R++ +   A + TN+ RDH+DYH T + Y  AK RLF + 
Sbjct: 168 LAEGAELVAMEVSSHALIQRRVEALHFAAAAITNISRDHLDYHGTMENYVAAKQRLFADF 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +     + ADD       +         L+       +    V         +++ +G
Sbjct: 228 GVQNRV--VNADDDTLSHWQQDDLADLWVSLNASPNEPCLQATGVQFHEQGSVFSLNWQG 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +      PL G F VYN L A  + + +    A + +   +L  VPGR E    N++   
Sbjct: 286 ESCVVETPLLGRFNVYNLLCAVAVLLKLNKPLADIGKACGRLQPVPGRMEAFH-NNQSPL 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L  +L  +R    GR+  VFGCGGDRD+GKRP MGK+A D AD+ +VTD
Sbjct: 345 VVVDYAHTPDALHQVLSALRLHCKGRLWCVFGCGGDRDRGKRPQMGKVAADYADVVVVTD 404

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+E  E+I  +I+ GI    +      R EA+  A++   K DV+++AGKGHE   +
Sbjct: 405 DNPRTEPAEQIIEDILTGIADKTQVKVWPGRREAVIRAMQEAGKDDVVLLAGKGHEDYQV 464

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +         +  ++ E L
Sbjct: 465 IGTQRIDY-NERAVVSEWL 482


>gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 486

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 241/501 (48%), Gaps = 33/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++Y+     IN++    +      I  V  DSR +    +FVA  G   DGH +I  
Sbjct: 4   LKDILYRV---SINKV----IGNTNVAITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKN 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+ QGA AIV        +      +    + V N ++ L+  AS  Y    EN+  + V
Sbjct: 57  AVNQGAIAIVCE------ELPKDTVNGVTYVKVQNAQQALAFMASNFYENPSENLQLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++AS + Q+  ++G     +      + +       TTP  + + K LS ++ 
Sbjct: 111 TGTNGKTTIASLLYQLYTKAGFKVGLLSTVKIMVGNIEHKATHTTPDSLTINKYLSKMTD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G  +  +E SSHG+ QHR  G+K   G FTNL  DH+DYH T   Y + K + F+EL P
Sbjct: 171 IGCEYCFMEVSSHGIAQHRTTGLKFTGGIFTNLSHDHLDYHSTFAEYRDVKKKFFDEL-P 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + A+  ADD      M    N   +  +   +    +  ++        +       +
Sbjct: 230 SSAFALTNADDKNG---MVMLQNTKAKKQTYALKSIADYKAQILENQFSGLLLKL---NN 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F  YN L        +G+ +   L  + +L  V GRF+++  N       
Sbjct: 284 NELWSKLIGNFNAYNLLAIFATTELLGMQTMESLRLISELESVNGRFQYLIKNK--ITAI 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I  I +    +I V GCGGDRD  KRP MG IA  L+   I T 
Sbjct: 342 VDYAHTPDALKNVLETINAIRTKNEELITVVGCGGDRDATKRPKMGHIASVLSTKVIFTS 401

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+EDP KI   I  G+        +   +R +AI+TA     + D++++AGKGHET 
Sbjct: 402 DNPRTEDPNKIIEAIESGVEPQHFKKTLSIADRKQAIKTACSFAKENDIILIAGKGHETY 461

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + NGE+    D  I++ +L
Sbjct: 462 QEI-NGERTDFDDFKIVKTLL 481


>gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
 gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
          Length = 520

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 157/493 (31%), Positives = 231/493 (46%), Gaps = 22/493 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +   +  ER I  +++DSR +  G +FVAI G   DGH +I +A+  GA A++  
Sbjct: 23  LDVLEMAGTEDAERMIVSLAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSGAAAVICE 82

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +            S    + V ++R+ L+  A   Y    E   ++ VTGT+GK++ A  
Sbjct: 83  A------LPEDNGSGAVYIRVADSRRALAAAARAFYRNASERIFLIGVTGTNGKTTTARL 136

Query: 133 VQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  +    G+ +  IG     I+        TTP    L      +   G     +E SS
Sbjct: 137 IADMLNSCGIPAGYIGTNLCRIAGRDISLDRTTPEAHELQALFRRMLDAGCQAAVMEVSS 196

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L   R+ G++     FTNL  +H+D+HQT   Y +AK  LF++L P E  A+   DD 
Sbjct: 197 HALVLDRVSGLRFRCAVFTNLSMEHLDFHQTMAGYADAKQILFDQLDP-EGFAVFNIDDP 255

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ-------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           Y+ ++  R         ++  Q       G+               V +           
Sbjct: 256 YASQMASRVAADKRFCCTLKPQRELTLRCGRSFSAAVSSRTLGSASVELHFPDAVHTVQT 315

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG + V N L AA +   +GI    V   L K   V GR E +    +    +VDYAH
Sbjct: 316 ELPGMYNVMNLLEAAAVLSGMGIAPGHVAAVLGKPFRVEGRMERIWDTEKSRCAFVDYAH 375

Query: 365 TSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++LE  L  +  +     R++VVFGCGG+RD+ KRP MG+IA + AD   +T DNPR 
Sbjct: 376 TPDALEKALSALGELKSSDARLVVVFGCGGNRDRLKRPEMGRIASEKADFVFLTSDNPRD 435

Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           E+PE I  EI  G+    +     R EAIR A   L   D+L+VAGKGHET   +  G K
Sbjct: 436 ENPEFILDEIECGMEGSNYRRITGREEAIREAAATLLPGDILLVAGKGHETYQEIA-GIK 494

Query: 481 KMSVDCDIIREIL 493
               D +I+RE L
Sbjct: 495 HFFSDQEILRECL 507


>gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
          Length = 486

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 145/476 (30%), Positives = 245/476 (51%), Gaps = 27/476 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G +FVAI G   DG  F+PQA+ +GA  IV                   +
Sbjct: 24  VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEKEVETGSAE--------L 75

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +   + R+ L   A   +        ++ +TGT+GK++    ++Q+   +G+    +G  
Sbjct: 76  ISHPSPREALGELAMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGMKVGVLGTV 135

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           S     + Q+  LTTP    L + L+ +   GV    +E SSH L Q+R+ G+K  A   
Sbjct: 136 SYRWPGYEQEAPLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNRVCGLKFDAAVI 195

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+ +DH+DYH   + YF AK  LF+         II  DD + + +++         + 
Sbjct: 196 TNVTQDHLDYHGDMEEYFKAKCMLFQHYPSALKRGIINFDDPFGRRLLE----CYSPAIG 251

Query: 270 VGYQG------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            G         K +  + V    +  ++ ++ +G+ ++    L G+F   N L A  + +
Sbjct: 252 YGMDASCATGCKSLCGEMVSCTGDGMRLKMTCDGEQWEIETDLIGKFNGSNLLAAQAIGL 311

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+     +   ++   VPGR E V  N +G  I+VDYAHT ++L+ +L+ ++ +   +
Sbjct: 312 HMGLTPKQ-MNVFKEFDGVPGRLERV-RNDQGLNIFVDYAHTPDALDNVLRTLKDLDFNK 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFI 440
           +I VFGCGGDRD+ KRP+M + A   +D+A++T DNPR+EDP +I  +    + G    I
Sbjct: 370 VITVFGCGGDRDRAKRPLMAEAACRYSDVAVLTSDNPRTEDPMQIIDDARPGLKGCDHVI 429

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           E+ +R +AIR A+  + + DVL++AGKGHET  I+   EK+   D + + + +  I
Sbjct: 430 EEVDRADAIRKAVAEMTEDDVLLIAGKGHETYQIIGT-EKRDFSDSEEVLKAIKEI 484


>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 780

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 143/515 (27%), Positives = 257/515 (49%), Gaps = 38/515 (7%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      E +I  +  DSR + AG +FV  VG + DGHL++ +A  +G
Sbjct: 245 LAELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRRTDGHLYLSEADKRG 304

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A A+V S    +++          +++V++T   L   ++  Y    +N  ++ ++GT+G
Sbjct: 305 AVAVVASKEIDIEE----TLGCKALVIVEDTNAVLPALSAAFYKYPSKNMAVIGISGTNG 360

Query: 126 KSSVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ A  ++ + +  GL +                ++  TTP  + +   ++ +   G  
Sbjct: 361 KTTTAYLIKGMYEAMGLRTGMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNGTE 420

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL-PKE 241
            V +EASSHGL   R D +      FTNL  DH+D +H T++ Y +AK +LF  ++ P+ 
Sbjct: 421 AVVMEASSHGLASGRCDEVDFDIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFARMVDPER 480

Query: 242 SPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              I+  DD+ +   + +   +      ++  +   +H  K      + QV ++      
Sbjct: 481 HRKIVNIDDSNASFFIAQGNPDVPVVTFAIENKSADVHPLKFELSLFETQVLVNTPHGIL 540

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G + V
Sbjct: 541 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFG-VIV 599

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + L ++L ++R +   RII V GC G+ D+GKRP+M K+A D +++ ++T DNP
Sbjct: 600 DYAHTPDGLSILLDSVRELKPKRIITVIGCAGEGDRGKRPMMTKVATDKSEVTMLTSDNP 659

Query: 421 RSEDPEKIRAEIIHGI----PGFIEKGN------------------RIEAIRTAIEMLNK 458
           ++EDP  I  +++ G+      +++ G                   R  A+R A+ M  +
Sbjct: 660 KNEDPLDILDDMLAGVGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEE 719

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            D++V+AGKGHET  I  + +K+   D +  RE L
Sbjct: 720 GDMVVIAGKGHETYQIEGD-KKEFFDDREECREAL 753


>gi|167647634|ref|YP_001685297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter sp. K31]
 gi|167350064|gb|ABZ72799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter sp. K31]
          Length = 485

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 203/493 (41%), Positives = 285/493 (57%), Gaps = 17/493 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             + ++Q+   P +  +  I  V++DSR ++ G++F A+ G+K DG  FI  AI      
Sbjct: 1   MSKTLSQILNRPFEV-DPVITGVTADSRKVREGFLFAALPGSKADGRSFIDGAI------ 53

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
              S A ++         + P++   + R+  +L A++ + + P   +AVTGT+GK+SVA
Sbjct: 54  --ASGAAAILAPDDVEGLSVPVVHAGDLRRAYALAAAQFWAEQPATCIAVTGTNGKTSVA 111

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFA-------QDNRLTTPSPIYLAKALSYLSSQGVT 183
            F +QI  R G  +  +G    + S             LTTP    +A+ ++ L+  GVT
Sbjct: 112 GFARQIYARLGHKAASMGTLGVVVSGPGIPDQQLTPPGLTTPDAADVAEMMARLAGMGVT 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H++VEASSHG+DQ RLDG++L A  FTN  +DH+DYH T   Y  AK+RLFE LLP+   
Sbjct: 172 HLAVEASSHGIDQRRLDGVRLAAAGFTNFTQDHLDYHGTMGCYRAAKLRLFETLLPRGKT 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ AD          A  +G  +LSVG++G+ + L     +   Q++ I+ + + FD L
Sbjct: 232 AVLNADSDAFPAFASAAVTSGQTILSVGHEGQGLKLVSHTPVPQGQRLKIAAQDRVFDVL 291

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G+FQ  N LVAAGL +A G D    +  LE L    GR + VGT +RGG  YVDYA
Sbjct: 292 LPLAGDFQASNVLVAAGLVLATGEDLDATIAALEHLEGAAGRLQRVGTGARGGEAYVDYA 351

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE +L  +R  T G++IVVFG GGDRD+GKRP+MG+IA  LAD+AIVTDDNPRSE
Sbjct: 352 HTPDGLETVLAALRPHTRGKLIVVFGAGGDRDRGKRPLMGEIAARLADVAIVTDDNPRSE 411

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +P  IRA I+   PG  E G+R EAIR    +L   DVLVVAGKGHE   +V  G     
Sbjct: 412 EPASIRAAILAAAPGAQEYGDRREAIRAGAALLADGDVLVVAGKGHEQGQLVA-GVNHPF 470

Query: 484 VDCDIIREILGLI 496
            D     + L  +
Sbjct: 471 DDVTETAQALEAV 483


>gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Rickettsia typhi]
          Length = 492

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 158/478 (33%), Positives = 248/478 (51%), Gaps = 23/478 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ++  KIN +S++S+ ++   +F A+ G   DG+ FI  A+  GA  ++  +  +      
Sbjct: 9   FKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNTVIDK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V++  + L       Y K P+N+++VTGT+GKSSV S++ Q        +
Sbjct: 68  -------VIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     PS   L      K    L+   + +++ EASSHGL+Q RL
Sbjct: 121 AFIGTIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K+   SFT+  +DH+DYH T++ Y  AK++LF + L     AI+ +D    + V   
Sbjct: 181 GKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             N   + ++VG +G  + + K+      Q +        ++    + G FQ  N L+AA
Sbjct: 241 LRNNNVKFITVGKKGD-VQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAA 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 G     ++E L K+  V GR E +     G  I+VDY+HT ++LE  L  ++ I
Sbjct: 300 LTLYYTGFKFDEIIEALSKVKPVKGRMERI----DGTNIFVDYSHTPDALEKALIELQNI 355

Query: 380 TS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++ V+FGCGGDRD+ KR +MGKIA   AD  I+TDDNPR EDP+ IR EII GI 
Sbjct: 356 KPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEIIRGIG 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              + E  +R EAI+  I  L + D+L++AGKGHE   IV + +K    D +++R+ L
Sbjct: 416 TATYTEIESREEAIKYGINNLKQDDILLIAGKGHENYQIVGD-KKLPFDDSEVVRKYL 472


>gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
 gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
          Length = 493

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 149/502 (29%), Positives = 229/502 (45%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   FP              E+   E++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWFPY-----------AGEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117
            +A+AQGA A++V +    +            +      + +S  A+  Y         I
Sbjct: 51  DKALAQGATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+S +    Q+       +  +G     +     D+  TT   I L + L  
Sbjct: 111 VGITGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHE 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + +GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  AK  LF  
Sbjct: 171 FADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLFRF 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTI 293
                   ++  DD      +    N   ++     +       + K         Q T+
Sbjct: 231 DSLLHG--LVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEVAFYTKNAQFNDQGVQATL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + D   PL G F + N L A       G+D   +   +  L  V GR E   T  
Sbjct: 289 VWPEGEVDIRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAGRMERFTTAD 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  
Sbjct: 349 N-ITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      DV+++AGKGHE
Sbjct: 408 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPGDVILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G +    +  + R++
Sbjct: 468 TYQE-AAGVRHDYDERALARQL 488


>gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 769

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 152/517 (29%), Positives = 259/517 (50%), Gaps = 43/517 (8%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      E +I  +  DSR + +G +FV  VG K DGHL++ +A  +G
Sbjct: 243 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADKRG 302

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A A+V S    +++          +++V++T   L   A+  YG   +N  ++ + GT+G
Sbjct: 303 AVAVVASKEIDIEE----TLGCKALVIVEDTSLVLPALAAAFYGHPSKNMAVIGIVGTNG 358

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQ 180
           K++ A  ++ + +  GL +   G  ST++ +       +   TTP  + + K ++ +   
Sbjct: 359 KTTTAYLIRAMYEAMGLRT---GMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHN 415

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
           G   V +EASSHGL   R + +      FTNL RDH+D+H++++ Y NAK +LF  ++ P
Sbjct: 416 GTEAVVMEASSHGLALGRCNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDP 475

Query: 240 KESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                I+  DD  +   + +   +      ++  +   +H  K      + QV +     
Sbjct: 476 DRHRKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKG 535

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G +
Sbjct: 536 ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFG-V 594

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++L  +L ++R + + RII VFGC G+ D+GKRPIM KIA D +D+ I+T D
Sbjct: 595 IVDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTKIATDKSDVVILTSD 654

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------------------AIEML 456
           NP++EDP  I  +++ G+   +    +  A                         A+ M 
Sbjct: 655 NPKNEDPLDILDDMLAGVGWTMHDYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMG 714

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + D++VVAGKGHET  I  + +K+   D +  RE L
Sbjct: 715 EEGDIVVVAGKGHETYQIEGD-KKEFFDDREECREAL 750


>gi|331091589|ref|ZP_08340425.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403616|gb|EGG83172.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 494

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 155/500 (31%), Positives = 249/500 (49%), Gaps = 33/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+      ++   S       E  I +V+ DSR ++   +FV I G+  DG L++
Sbjct: 1   MKLTNLLRPIKYSILQGES-------EPDIEKVTHDSREVERDTLFVCIKGSATDGALYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+ +GA AI+             +      ++V+N R+ L+  AS  YG+  + +  +
Sbjct: 54  GEAVEKGAVAILADRRIE-------VPREVTFILVENVRETLAKIASVFYGEPSKEMTVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++ A  +  I ++SG     IG     I       + T+P  + + + L  +
Sbjct: 107 GITGTKGKTTTAYMIYHILEQSGYKVGLIGTIEIRIGEKRIPAKNTSPESVNIQRFLKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
             Q      +E SS GL  HR D I+   G FTNLG+DHI    H+  + Y N K +LF 
Sbjct: 167 VLQKCDIAVMEVSSQGLKLHRTDEIQFDIGVFTNLGKDHIGKFEHKDFEEYKNCKAKLFS 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
           +        I   D  Y +E+  RA N     +    +  +    +V    + +  +   
Sbjct: 227 Q----SDFGIANMDSPYWREMFLRA-NCDVETVGFSKEADYYASDEVVTRKSGRLGIRYR 281

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + GKD  D +  + G F +YN+L A  +C  +G+    + + L K   V GR E + TN 
Sbjct: 282 LNGKDRGDIVLSMAGRFNIYNSLCAIAVCRRLGVSFENIRQSLCK-TQVKGRVEQISTN- 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +G  I +DYAH + SL+ IL+ + +    RII +FGCGG+R + +R  MGK++  LAD  
Sbjct: 340 KGTIILIDYAHNAMSLQSILEMVHSYRPHRIICIFGCGGNRAKERRYEMGKVSGALADFT 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I+T DNPR E+P +I +EI  G+      ++E  NR EAIR  I+     D++V+AGKGH
Sbjct: 400 IITSDNPRYENPLQIMSEIREGVEDGNGNYLEICNREEAIRYGIKYAGAADIIVIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDII 489
           E    +  G +    D +++
Sbjct: 460 EEYQEIE-GIRYHMTDREVV 478


>gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
          Length = 489

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/505 (27%), Positives = 233/505 (46%), Gaps = 37/505 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+     E+I          ++  I  +  DSR ++ G +FV +VG   + H FI
Sbjct: 1   MKLEKLLNGFEYEIIGN--------KDVDITTLVYDSRKVEEGSLFVCMVGAAFNAHDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            Q I +GA AIV+S   SL++           + V +TR  L+L +   +    +   ++
Sbjct: 53  DQVIEKGAHAIVISQDVSLKE-------GMTYIRVKDTRIALALLSCAYFNYPSKELKVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK+S +  ++ I + +G     IG   T I    +    TTP    L + +  +
Sbjct: 106 GITGTKGKTSSSLMIKSILEHAGKKVGIIGTNGTFIGDIHEPTANTTPESYELQRIMRKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
                 +  +E SS  L  +R+ GI+   G FTN+  DHI    H+    Y   K  LF+
Sbjct: 166 VEHDCEYCVMEVSSQALKMNRVAGIEFDYGVFTNISPDHIGPNEHKDFAEYMACKKHLFD 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVT 292
                    +   DD + +E  K   +  C+VL+   +           ++N+     +T
Sbjct: 226 FC----QVGLFNKDDEHFEEFTK---DVPCKVLTYSIEKDSDLKALHIELYNENGELGIT 278

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              +G  +  F   +PG+F  YNALVA  +C  I + +  +   L ++H V GR + +  
Sbjct: 279 FDTKGLINASFKASMPGKFNAYNALVAIMICYLIDVPTKDIQNTLPQVH-VLGRGQVMHV 337

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +     + +DYAH   S E I+  +      ++IVV+G GG R + +R   G++      
Sbjct: 338 SPD-YSVLIDYAHNGVSFESIISTVEQYNPNKLIVVYGSGGKRSKTRRYESGEVVAKHGG 396

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            +I+T DNPR E    I  +I+ GI      +    +R EAI  A++M  K DV+++ GK
Sbjct: 397 YSILTADNPRGEKIVDICKDIVVGIDKYHGEYTIIPDRKEAIYHALDMACKGDVVLLLGK 456

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHET  I  +   +   + +++ E 
Sbjct: 457 GHETYMIGEDEVTRHFSETEVLEEY 481


>gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
 gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
          Length = 493

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 148/502 (29%), Positives = 229/502 (45%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   FP              E+   +++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWFPY-----------AGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117
            +A+AQGA A++V +    +            +      K +S  A+  Y         I
Sbjct: 51  DKALAQGAIAVLVHTDSIEEQGKVIATEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+S +    Q+       +  +G     +     D+  TT   I L + L  
Sbjct: 111 VGITGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLYE 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + +GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  AK  LF  
Sbjct: 171 FADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRF 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTI 293
              +    ++  DD      +    N   ++     +       + K         Q  +
Sbjct: 231 DALRHG--LVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQAKL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + D   PL G F + N L A       G+D   +   +  L  V GR E   T  
Sbjct: 289 VWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTAD 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  
Sbjct: 349 N-ITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      DV+++AGKGHE
Sbjct: 408 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G +    +  + R++
Sbjct: 468 TYQE-AAGVRHDYDERALARQL 488


>gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
 gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
          Length = 488

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 154/507 (30%), Positives = 239/507 (47%), Gaps = 33/507 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++YK     I              +  +  DSR       F+A+ G   DGHLF
Sbjct: 1   MKNLKDILYKVSANKI-------FGETNIVVKNLVFDSRKAACNTAFIALKGVAIDGHLF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I +AI  GA  +V        DF    +     + V +T+  L++ AS  Y        +
Sbjct: 54  IDKAINLGAIVVVCE------DFPKEQKEGVTYIQVSDTKIALAIMASNFYDNPSSKIPL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++VAS + Q+ +++G     +      +         TTP  + +   L  
Sbjct: 108 IGVTGTNGKTTVASLLYQLFKKAGYKVGLLSTVKVLVDETEFKATHTTPDSVTINSYLDK 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV    +E SSHG+ Q R +G+    G FTNL  DH+DYH T  AY N K   F+ 
Sbjct: 168 MIDAGVDFCFMEVSSHGIHQKRTEGLTFAGGVFTNLSHDHLDYHDTFAAYRNVKKHFFDT 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK +  +   DD   + ++    N+     +   +    +  K+        + I+++
Sbjct: 228 L-PKSAFVLANIDDKNGRFML---QNSKAIKKTYALKTAADYKVKILEKQLSGTL-IALD 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G +      L G F +YN          +G++   +L  L  L  V GRFE+V  +  G 
Sbjct: 283 GTE--VWIKLIGVFNIYNVTAVIATAELLGLEKLEILTILSALESVSGRFEYV-ISQDGV 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L+ I  I  G  ++I V GCGGDRD+ KRP M  IA  L++  I
Sbjct: 340 TAIVDYAHTPDALKNVLETINDIKIGAEKVITVLGCGGDRDKTKRPKMAHIASQLSNQVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+E+P+ I  ++  GI        +   +R +AIRTA +     D+L++AGKGH
Sbjct: 400 FTSDNPRTENPQTILEDMEAGIALQNYKKTLTILDRKQAIRTACKFSEPGDILLIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           E     TNG +    D + ++     +
Sbjct: 460 ENYQE-TNGVRIHFDDLEEVKNCFNQL 485


>gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
 gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
          Length = 519

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 164/497 (32%), Positives = 249/497 (50%), Gaps = 25/497 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+ +  P             RER+I+ +S DSR +  G +F A  G ++ GH +I  
Sbjct: 22  LSDLLAEWVP---------IGAVRERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGA 72

Query: 63  AIAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           A+ QGA AIV      +     +     N P++ + +    L + A+R Y +      +L
Sbjct: 73  AVNQGAAAIVYDPVIPVSPVIQTQLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVL 132

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV+ F+ Q   R  +    IG     +    Q + LTTP  I + + L+ +
Sbjct: 133 GVTGTNGKTSVSHFLAQALHRQEVPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAM 192

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +    +  +E SSH L Q R+ G+      FTNL R+H+DYH     Y  AK RLF + 
Sbjct: 193 VASKARYAVLEVSSHALGQGRVSGVAFNIAIFTNLSREHLDYHGDMARYEAAKFRLFNQ- 251

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
            P    A+I  DDA  +  +        + +S G       +H  K+    +   +TI  
Sbjct: 252 -PGLRHAVINGDDAAGRAFLANLP-PEVKAISYGLMNPQASLHTGKLRCDRHGIAMTIQS 309

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +     PL G F  YN L A G  +A+G+     L+ L ++  V GR E +G     
Sbjct: 310 AWGEGQLTCPLLGRFNAYNLLAALGGLLAVGMPFTEALQRLSQVRAVVGRMESLGGEEGE 369

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE +L+++R      GR+  VFGCGG+RD+GKRP+MG  A  LAD  
Sbjct: 370 PLLVVDYAHTPDALEQVLRSLRAHLGPGGRLWCVFGCGGNRDRGKRPLMGAAAERLADFV 429

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++TDDNPR+EDP +I  +I+ GI          NR EAI  A ++   +D++++AGKGHE
Sbjct: 430 MLTDDNPRNEDPIQIIVDILSGIDDPDRVYQFRNRSEAIIRATQLAEPEDIVLIAGKGHE 489

Query: 471 TVHIVTNGEKKMSVDCD 487
               +   E++   D +
Sbjct: 490 EYQQIGA-EQRPFSDRE 505


>gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
 gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
          Length = 493

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 148/502 (29%), Positives = 229/502 (45%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   FP              E+   +++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWFPY-----------AGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117
            +A+AQG  A++V +    +            +      K +S  A+  Y         I
Sbjct: 51  DKALAQGVTAVLVHTDSIEEQGKVITTEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+S +    Q+       +  +G     +     D+  TT   I L + L  
Sbjct: 111 VGITGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHE 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + +GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  AK  LF  
Sbjct: 171 FAGKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRF 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTI 293
              +    ++  DD      +    N   ++     +       + K         Q T+
Sbjct: 231 DALRHG--LVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQATL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + D   PL G F + N L A       G+D   +   +  L  V GR E   T  
Sbjct: 289 VWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTAD 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  
Sbjct: 349 N-ITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      DV+++AGKGHE
Sbjct: 408 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G +    +  + R++
Sbjct: 468 TYQE-AAGVRHDYDERALARQL 488


>gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
 gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
          Length = 532

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 161/476 (33%), Positives = 236/476 (49%), Gaps = 20/476 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  VS DSR I+ G ++ A+ G    G  F+  A A GA A++   A   +  +A  
Sbjct: 64  EVLVTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAVAVLTDPAGVERALTA-- 121

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
               P+LVV + R  L   A+ +YG+  +++  L +TGT+GK++ +  +  + +R G  +
Sbjct: 122 --GLPLLVVPDPRAVLGDVAATVYGEPTKDLQLLGITGTNGKTTTSFLLDAVLRRLG-PA 178

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T I      + +TTP    L    + +  QGV   ++E SSH L + R+DG +
Sbjct: 179 ALVGTIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVSSHALAKGRVDGAR 238

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+H+T + YF AK  LF     +   A++  DD Y + +  +    
Sbjct: 239 YSVAGFTNLSQDHLDFHKTFEQYFAAKASLFTP--ERCDLAVVNIDDKYGRRLAAQTVVP 296

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V +      +       + H    + I   G+       LPG+F V NAL+A  +  
Sbjct: 297 LVTVSTT-RDADWTVAGTHQSEHGGTVIDIRGPGEALTVEIVLPGDFNVANALLAVAMLR 355

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            + + +  +   L     VPGR E       G  + VD+AHT +++E+ L+  R  T GR
Sbjct: 356 QVDVPADEIAAGLRTAR-VPGRMETF-LRPDGLAVIVDFAHTPDAVELALRAARGATKGR 413

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI--- 440
           +  V GCGGDRD GKRP MG  A   AD  IVTDDNPR EDP  IRA  + G    +   
Sbjct: 414 LYAVVGCGGDRDPGKRPAMGAAAARAADTVIVTDDNPRGEDPATIRAAAVEGARAAVPDV 473

Query: 441 ---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              E G+R  AIRTAIE+    D +VV GKGHET   V  G      D   +RE+L
Sbjct: 474 ELREVGDRRAAIRTAIELAGPGDTVVVLGKGHETGQDV-GGVIHPFDDRQTVRELL 528


>gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia typhi str. Wilmington]
 gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington]
          Length = 498

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 158/478 (33%), Positives = 248/478 (51%), Gaps = 23/478 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ++  KIN +S++S+ ++   +F A+ G   DG+ FI  A+  GA  ++  +  +      
Sbjct: 15  FKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNTVIDK- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V++  + L       Y K P+N+++VTGT+GKSSV S++ Q        +
Sbjct: 74  -------VIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKA 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     PS   L      K    L+   + +++ EASSHGL+Q RL
Sbjct: 127 AFIGTIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRL 186

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K+   SFT+  +DH+DYH T++ Y  AK++LF + L     AI+ +D    + V   
Sbjct: 187 GKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDY 246

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             N   + ++VG +G  + + K+      Q +        ++    + G FQ  N L+AA
Sbjct: 247 LRNNNVKFITVGKKGD-VQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAA 305

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 G     ++E L K+  V GR E +     G  I+VDY+HT ++LE  L  ++ I
Sbjct: 306 LTLYYTGFKFDEIIEALSKVKPVKGRMERI----DGTNIFVDYSHTPDALEKALIELQNI 361

Query: 380 TS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++ V+FGCGGDRD+ KR +MGKIA   AD  I+TDDNPR EDP+ IR EII GI 
Sbjct: 362 KPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEIIRGIG 421

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              + E  +R EAI+  I  L + D+L++AGKGHE   IV + +K    D +++R+ L
Sbjct: 422 TATYTEIESREEAIKYGINNLKQDDILLIAGKGHENYQIVGD-KKLPFDDSEVVRKYL 478


>gi|224581966|ref|YP_002635764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224466493|gb|ACN44323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 471

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 240/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A      
Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++  + V        +  +    D +    L G F V N L+A    +A+
Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLTNLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+    +    
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI      DV+++AGKGHE   IV       S D      +LG+I
Sbjct: 418 EGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLDYS-DRVTAARLLGVI 470


>gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
 gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
          Length = 483

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 167/499 (33%), Positives = 240/499 (48%), Gaps = 26/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     +          +  +  I  + +DSR IQ G +FVA  G+  DG LFI
Sbjct: 1   MKLTQLLKSWLNQ----------EVVDCTITGMQNDSRLIQPGDLFVAYPGSAADGRLFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
            +A++ GA A+V   A    D    + ++ P + V +    L+  A   Y        I 
Sbjct: 51  AKAVSAGAVAVVYEPANFPIDG--VLPTSIPCIAVPDLATKLAYIAKAFYDDPENSLTIT 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++A  + Q     G  +  IG     + +  Q    TTP  + L K L   
Sbjct: 109 GITGTNGKTTIAYQLAQAHHLLGQGAAYIGTIGQGNVNELQPLDNTTPDSLRLQKLLHQY 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG+  V +E SSH L QHR+D +      FTNL  DH+DYH   + Y  AK  LF   
Sbjct: 169 KEQGLKQVCMEVSSHALAQHRVDALTFKQAIFTNLTLDHLDYHHNMENYAAAKAILFSG- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
                 AII  DD Y ++VM  A     + L+ G +    +         N  ++ +   
Sbjct: 228 -ESLQWAIINQDDEY-QQVMAAALKPHVKKLTYGLREDCDVKAVNWRMDINGTEIDVHSP 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                      G F +YN+L      +A G     V+  + +L   PGR E V +     
Sbjct: 286 WGQHHLRIKALGAFNIYNSLAVFSSLLASGYAPEKVVAVMSQLKAAPGRLEIVASA---P 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE  L  +  I  GR+ VVFGCGGDRD+ KRP+MGKIA   AD  I+T
Sbjct: 343 YVLVDYAHTPDALENALVTLGQIKKGRLWVVFGCGGDRDKSKRPMMGKIASLNADKIIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP+ I  EIIHGI      ++  NR EAI  A+E  N  D++++AGKGHE   
Sbjct: 403 SDNPRTEDPQTIIEEIIHGITPAAHVMQFVNREEAIAYALENANIDDIILIAGKGHEAYQ 462

Query: 474 IVTNGEKKMSVDCDIIREI 492
            +    K    D ++++ +
Sbjct: 463 QIGR-VKHAFSDQEVVQRL 480


>gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
 gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
          Length = 951

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 160/483 (33%), Positives = 240/483 (49%), Gaps = 26/483 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR I+ G +FVA  G   DG L+I +A+A GA A++  +  +    +   ++  P
Sbjct: 30  HLKLDSRDIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPANDAVAAVADQA--P 87

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V   R  L   A   YG+    +  +AVTGT+GK+S   ++     R+      IG 
Sbjct: 88  MLPVTGLRALLGELADTWYGRPSAELAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGT 147

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +          LTTP  + + + L+ +   G   V++EASS G++Q R+DG+++   
Sbjct: 148 LGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALA 207

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL RDH+DYH T + Y  AK RLF    P  + A+I ADD   + ++          
Sbjct: 208 AFTNLTRDHLDYHGTMERYEAAKARLFR--WPGLTAAVINADDEAGRRLIAGLPAGMAMG 265

Query: 268 LSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            S+    +    +  + + A    Q  T+     +   +  L G   V N L+ AG+   
Sbjct: 266 YSLSADPEIPAGMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVLYQ 325

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +G+  A +   L     V GR + V            RG  + VDYAHT ++L   L  +
Sbjct: 326 LGLPFAQIARELAATDPVDGRLQTVEPVAHSTQAATGRGALVVVDYAHTPDALARALSAL 385

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R +    SGR+I +FGCGG+RD GKRP MG+IA DLAD  +V+ DNPR+E PE I  +I+
Sbjct: 386 RAVATARSGRLICLFGCGGERDPGKRPEMGRIAADLADHVVVSSDNPRTESPEAIVEQIL 445

Query: 434 HGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            GIP  +    + +R  AI   I      DV+++AGKGHET   +  GEK    D +  R
Sbjct: 446 AGIPDSVRPDVQVDRARAIMQTIWAAAPDDVVLLAGKGHETYQDI-GGEKLPFDDREWAR 504

Query: 491 EIL 493
             L
Sbjct: 505 LAL 507



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 150/391 (38%), Gaps = 24/391 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS+D+R I  G +FVA+VG   D H ++ QA A+G        A +     A   +
Sbjct: 511 QIKGVSTDTRRIGQGELFVALVGENFDAHNYLDQAEARG--------ACAAVVAHAVPDA 562

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LV+ +TR  L    +    +    ++AVTG++GK++    +  +         + G
Sbjct: 563 KLPQLVLGDTRIALMRIGAAWRAQFALPVVAVTGSNGKTTTKEMISAMLAEW---QGEAG 619

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +T  +   D  +         +  + +   G+ H    A    +              
Sbjct: 620 RLATAGNLNNDIGVPLTLLRLRPEHRAAVFELGMNHPGEIAQLAAIA-------APTVAL 672

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN  R+H ++  + +A  +        L P++  A+   D+ YS      A     RVL
Sbjct: 673 VTNAQREHQEFMHSVEAVAHENGAAIAAL-PEDGVAVYPGDEPYSAIWDALAEPR--RVL 729

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G Q G  ++ +++ A  +  +  +       D   P+PG   + NAL A    IA G 
Sbjct: 730 RFGLQPGLDVYAEQILADVHATRCRVVTPMGVADLTLPVPGLHNLRNALAAIASAIAAGA 789

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                +  L     V GR +    +     I   Y    +S+ + +  +  +   R++V+
Sbjct: 790 PLEGAVRALSGFSPVAGRMQHKHMSDGTLLIDDTYNANPDSVRVAVDVLARMAGKRVLVL 849

Query: 388 FGCGGDRDQG--KRPIMGKIALDLADIAIVT 416
              G   D G      +G  A +    A +T
Sbjct: 850 GDMGEVGDNGPAMHVEVGNYAREQGLDAFIT 880


>gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
 gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
          Length = 487

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 157/485 (32%), Positives = 234/485 (48%), Gaps = 16/485 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +N L   P    +  I E++ DSR ++ G +F+A+ G + DG   +  AI      
Sbjct: 1   MPMPLNHL--LPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAI----AR 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
              + AY  +     +     ++ V +    LS  A R YG+   N+  + VTGT+GK+S
Sbjct: 55  GAAAVAYESEGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  + Q   R G     IG   T      +  R TTP  I +   L+ L  +G   V++
Sbjct: 115 VSQLIAQALDRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  ++     FTNL RDH+DYH T +AY  AK RLF   +P  S  +I 
Sbjct: 175 EVSSHGLDQGRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFG--VPGLSCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +      +     S+     +++  +     +     +     +     PL 
Sbjct: 233 LDDGFGRALAGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A G  + +      +L  L +L    GR + +G   R   + VDYAHT +
Sbjct: 293 GRFNVSNVLAAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDR-PLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L  +R    GR++ +FGCGGDRD GKRP+M ++A  LAD  +VTDDNPR+E PE+
Sbjct: 352 ALEKVLTALRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPER 411

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  ++  G            R +AI   I   N  DV+V+AGKGHE    +  GE+    
Sbjct: 412 ILEDVRSGFVNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKGHEDYQEIR-GERLPFS 470

Query: 485 DCDII 489
           D +  
Sbjct: 471 DIEEA 475


>gi|33239864|ref|NP_874806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|46576944|sp|Q7VDG4|MURE_PROMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33237390|gb|AAP99458.1| UDP-N-acetylmuramyl tripeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 503

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 151/496 (30%), Positives = 248/496 (50%), Gaps = 16/496 (3%)

Query: 11  FPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL   + I   +  ++  I+ +S DSRHI  G +F  + G K DG +F  +A+A GA 
Sbjct: 5   LHELFKAVGIHRQIVGKDLIIDSISCDSRHISKGGLFFGLPGEKVDGGIFWRKALASGAV 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A V+    + +D  +    +   +V D    ++   AS  + +     +++ VTGT+GK+
Sbjct: 65  AAVIGEEAAQKDPPSN--EDMVFVVSDPVAHWMGEMASVFWKRPSSQIDLIGVTGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVS 186
           +    ++ +C++SG++S   G          +  + T +    L   L+   + G     
Sbjct: 123 TTTYLIEHLCKQSGITSALFGTLYNRWPKHSEVAIHTTAFGDVLQSQLAQAVAAGARLGV 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPA 244
           +E SSH LDQ R+ G       FTNL +DH+DYH++ +AYF +K  LF+   L  KES +
Sbjct: 183 MEISSHALDQRRVAGCSFSGAVFTNLTQDHLDYHESMEAYFQSKALLFQAPLLRDKESCS 242

Query: 245 IIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ++  DD +   + K+ + +  R       +      + L  +   +   +  +       
Sbjct: 243 VVNIDDPWGLRLSKQLNKSCWRASLEKRVIDSIQPELFLTDLNITNKGIEGVLHSPFGQG 302

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F+  L G F + N L A G+ I  G+    +L  ++    VPGR E +        + V
Sbjct: 303 PFVSSLIGRFNLMNMLEAVGILIQHGVSLQELLPSIKSFSGVPGRMEQIKVEGDLPVVLV 362

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + L+  L  +R+  SGR+  VFGCGGDRD+ KRP+MG IA   AD   +T DNP
Sbjct: 363 DYAHTPDGLKNALIALRSFGSGRLFCVFGCGGDRDRSKRPLMGAIASKFADHVTLTSDNP 422

Query: 421 RSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R+EDP++I  +++ GI      I + +R  AI+ AI      D++++AGKGHE   I+  
Sbjct: 423 RTEDPQQILNDVLPGIATETELIIEIDRANAIQMAIMKALPGDIVLIAGKGHENYQILGL 482

Query: 478 GEKKMSVDCDIIREIL 493
              +   D +I ++IL
Sbjct: 483 ETIE-FDDREIAKKIL 497


>gi|282897071|ref|ZP_06305073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
 gi|281197723|gb|EFA72617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
          Length = 495

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 155/491 (31%), Positives = 240/491 (48%), Gaps = 12/491 (2%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  EL+  +     Q ++ ++  + ++S     G +F+ I G + DG  F P A+A GA 
Sbjct: 2   NLRELLAVIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAGAV 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A ++S   + +    +  S+  ++   N  K  +   +  YG   E +  + VTGT+GK+
Sbjct: 62  AAIISPQAASK---TSPTSDALVITASNLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++    ++ L +  +G   T    F+Q    TTP  I L   L+     G     
Sbjct: 119 TTTHLIEYFLNQANLPAALLGTLYTRWPGFSQVANHTTPFAIDLQHNLAQAVDAGCQLGI 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q R+ G       FTNL +DH+DYHQ  + YF AK  LF     +   A+I
Sbjct: 179 MEVSSHSLAQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDYLQ-GRAVI 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +            S+        +  +    +     +     +  F  PL
Sbjct: 238 NIDDQYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNSPFSSPL 297

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365
            G++ + N L A    + +G+D   V++++     VPGR E +  +      + VDYAHT
Sbjct: 298 VGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQIDPHQDISVIVDYAHT 357

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +SLE +LK  R    GRII VFGCGGDRD+ KRP MG+IA DLAD+ +VT DNPR+E+P
Sbjct: 358 PDSLENLLKAARPFIPGRIICVFGCGGDRDKTKRPKMGRIAADLADVVVVTSDNPRTENP 417

Query: 426 EKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I  +I+ G+P  +     G+R  AI TAI      D +++AGKGHE   I+   EK  
Sbjct: 418 DAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQILGT-EKIH 476

Query: 483 SVDCDIIREIL 493
             D +  R+ L
Sbjct: 477 FDDREQARDAL 487


>gi|148360435|ref|YP_001251642.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|296106499|ref|YP_003618199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148282208|gb|ABQ56296.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|295648400|gb|ADG24247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 483

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 158/504 (31%), Positives = 247/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDF-PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+      ++I           +  ++++ +DSR ++ G +FVA  G   DG L+
Sbjct: 1   MKLTQLLEPWIKRDII-----------DGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLY 49

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
           I     +   +  V+  Y   +    I   +  P + +    + L   A R +    +  
Sbjct: 50  I----EKAVASGAVAVVYEPNNLPQGITLPTAIPCIAIPQLAEKLGEIAKRFFNNPSQFL 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKAL 174
            +  VTGT+GK+++A  + Q     G  S  IG          +    TTP  + L + +
Sbjct: 106 GLTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGKVDALKPLENTTPDALCLQRLM 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +G+  V +E SSH L QHR+D ++     FTNL  DH+DYHQT QAY  AK RLF
Sbjct: 166 HQYKEEGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTI 293
           E    +   AII  DD + +++M        + ++ G +Q   +   +        ++ +
Sbjct: 226 ER--AELQWAIINQDDDF-QDLMSNVLKTHVKKVTYGMHQNCDVKALQWNMDITGTEIEV 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                         G+F +YN+L      +A G +   V++ + +L   PGR E V   +
Sbjct: 283 KSPWGHQLLKIKALGKFNIYNSLAVYSSLLASGHNPEKVVQVMAELKAAPGRMEIV---A 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT ++LE +L  ++ I  GR+ VVFGCGGDRD+ KRPIMGK A   AD  
Sbjct: 340 QSPYVLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNI 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++T DNPRSEDPE I  EI  GIP      +  NR EAI  A+      D++++AGKGHE
Sbjct: 400 VITSDNPRSEDPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           +   + N  K +  D +++R ++ 
Sbjct: 460 SYQQIGN-TKHVFSDQEVVRRLMN 482


>gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 513

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 149/509 (29%), Positives = 236/509 (46%), Gaps = 31/509 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +    F +LI  L +          + +V  DSR  + G +FVA+ G   DGH F+  A 
Sbjct: 1   MTQSRFSDLIQALPVTSSGGDLGTVVTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADAR 60

Query: 65  AQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           A+GA A +V S    L ++ A          V NTR  L L A+  +G+  E +  + +T
Sbjct: 61  ARGAVAALVESWEPDLANYPA-------YAAVPNTRAALPLVAATFFGRPAEALGIIGIT 113

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ +  V  + + +G  +  IG  +          D R TTP  + + + L+ + 
Sbjct: 114 GTDGKTTTSYLVDAMLRSAGYRTGLIGTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMR 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +EA+SHGL  HRLD      G  TN+  +H+++H T + Y  AK RL E + 
Sbjct: 174 EARVDWAVLEATSHGLALHRLDECAFDVGVVTNITHEHLEFHGTIEEYRRAKARLLERVA 233

Query: 239 -----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                P     ++  DD  ++ + + A  A     S       +    V    +     +
Sbjct: 234 GRGPRPYPGGVVLNRDDEGARAIAEAAGTAPVLWFSAKGAPADLQADDVQLAADGTSFRL 293

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +           L G + V NAL AAG+   +G+    +   LE L  VPGR   V    
Sbjct: 294 TTPRGSVPVRLNLIGAYNVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGRMRRVDL-G 352

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE  L+ +R++  GR+I VFG  G+RD+ KRP+ G ++  LAD +
Sbjct: 353 QPYTVIVDYAHTPDSLEKSLRLLRSLVPGRVIAVFGSAGERDRAKRPLQGAVSARLADFS 412

Query: 414 IVTDDNPRSEDPEKIR---------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + T ++PR EDP+ I          A  + G   ++   +R  AIR A++     D +++
Sbjct: 413 VFTSEDPRFEDPDAIIAEIAAGARDAGAVEG-RDYVCIEDRRAAIRAALDWARPGDGVLL 471

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHE   I+   E++   +       L
Sbjct: 472 AGKGHERC-IIYGAERRPWDEAREAELAL 499


>gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
 gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
          Length = 486

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 158/504 (31%), Positives = 255/504 (50%), Gaps = 33/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK LQD++Y    E I   +  P       +  V  DSR+++  +++VA  G + DGH F
Sbjct: 1   MKTLQDILYGVSIEAIVGATTIP-------VKGVVFDSRNVKIDFVYVAQKGVQVDGHDF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  AI+ GA+ IV           A   +    + V+N+ K L + AS  Y      +  
Sbjct: 54  ISHAISNGAKVIVCE------FIPAECVAGVAYVKVENSSKTLGVLASNFYDNPSRKLTL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++AS +  +    G +   +     I  +   +N  TTP  I + K L  
Sbjct: 108 VGVTGTNGKTTIASLLYALFSSEGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHA 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GVTH  +E SSHG+ Q+R++G+    G F+NL  DH+DYH   + Y + K + F+ 
Sbjct: 168 MVESGVTHCFMEVSSHGIAQNRIEGLHFYVGIFSNLTHDHLDYHGDFKNYRDIKKQFFDS 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L PK + A+   DD     ++    N   +  +   +       ++        +   ++
Sbjct: 228 L-PKTAFALTNVDDKNGTYML---QNTVAKKYTYAIKQHADFKAQILECQFSGML---LK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +  +    L G F   N L    +   + + S  +L+ + +L  V GRF+ + T ++  
Sbjct: 281 IQSQEVWTSLIGAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGRFQTLQTPNK-V 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + VDYAHT ++LE +L+ I TI +    +I V GCGG+RDQ KRP+M K A++ +D  I
Sbjct: 340 TVVVDYAHTPDALENVLQTIATIRTRNETLITVIGCGGNRDQEKRPLMAKAAVNFSDKVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-----RIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+EDP  I ++++ G+P    K       R EAI  A ++  + D++++AGKGH
Sbjct: 400 FTSDNPRNEDPAVIISDMMKGVPAEHYKKTLKVTLREEAIAMAGQLAKEGDIVLIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + NGE+    D DI +EI 
Sbjct: 460 ETYQEI-NGERFPFSDMDIAKEIF 482


>gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
 gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
          Length = 481

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 145/480 (30%), Positives = 240/480 (50%), Gaps = 25/480 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             ++N++  DSR +  G +F+A  G   DGHL++ +AI  GA+AI+         FS   
Sbjct: 14  NIEVNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIICE------GFSFDR 67

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +     + V +  + L++ AS  Y        ++ VTGT+GK+++AS + Q+  ++G   
Sbjct: 68  KEGITYIRVADANEALAIMASNFYENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAGYKV 127

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +      + +       TTP  + + + L  +   GV +  +E SSHG+ Q R +G++
Sbjct: 128 GLLSTVKILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKRTEGLQ 187

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL  DH+DYH+    Y N K + F++L PK + A+   DD     ++    N 
Sbjct: 188 FSGGIFTNLSHDHLDYHKDFAEYRNVKKKFFDDL-PKSAFALTNIDDKNGNYML---QNT 243

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +  S   +       K+        + IS++  +      L G F +YN         
Sbjct: 244 KAKKYSYALKTLADFKAKILEKQLSGTL-ISIDNTE--VWTKLIGVFNIYNLTAIIATAE 300

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G++   +L  + +L  V GRFE+V  +  G    VDYAHT ++L+ +L+ I  I +  
Sbjct: 301 LLGLEKLDILTIVSQLESVNGRFEYV-VSEDGVTAIVDYAHTPDALKNVLETINDIRTNN 359

Query: 384 --IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---- 437
             +I V GCGGDRD+ KRP M  IA  L++ AI T DNPR+EDP+ I  E+  GI     
Sbjct: 360 EKVITVVGCGGDRDKSKRPKMAHIAAHLSNQAIFTSDNPRTEDPQIILDEMEAGISPEHY 419

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
              +   NR +AI+TA ++ +  D++++AGKGHE+   + NG +    D + +      +
Sbjct: 420 NKTLTVVNRRQAIKTACKLSDAGDIILIAGKGHESYQEI-NGVRSHFNDLEEVTNCFNQL 478


>gi|160880627|ref|YP_001559595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
 gi|160429293|gb|ABX42856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
          Length = 493

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 149/508 (29%), Positives = 240/508 (47%), Gaps = 35/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+ +        L+    +   +R+I+ +  DSR ++   IFV I G   DGH F
Sbjct: 1   MKLTKLLER--------LTYQCKEGTVDREISTLCYDSRKVEKDSIFVCITGVVSDGHSF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + + IA+G+  IV     S+ D          +L+V NTR+ L+  ++  +    E +  
Sbjct: 53  VNEVIAKGSTVIVAEKEVSVPD-------GVTLLLVSNTREALAYLSAAYFDYPAEKLKT 105

Query: 120 VTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           +  T  K        V  I   +G+ +  IG   T I         TTP    + +  + 
Sbjct: 106 IGITGTKGKTTTTYMVHSILSEAGIKTGLIGTIETMIGDTVIPANNTTPESYLVQQYFAK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +   G T V +E SS GL  HR+ G     G FTN+  DHI    H + + Y   K  LF
Sbjct: 166 MVEDGCTCVVMEVSSQGLMLHRVSGFTFDIGVFTNMEPDHIGPGEHGSFEEYMACKGLLF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI- 293
           ++        I   DD + ++V+   H        +  +     +           + + 
Sbjct: 226 KQC----KVGIANVDDKHMEQVLS-GHTCTLETYGLSEKADLRAVDIDLHSKLGNLMVLY 280

Query: 294 SVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V+G  DF     +PG+F VYN+L A  +C    I +  + E L K+  V GR E V  +
Sbjct: 281 KVKGLCDFPVQVNIPGKFTVYNSLTAIAICRHFNISTERIKEVLTKVK-VKGRVEPVEVS 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + +DYAH + SL+ +L  +R     R++ +FGCGG+R + +R  MG+I+ +LAD 
Sbjct: 340 KK-FTMMIDYAHNAMSLQSVLSTLREYEPKRLVCLFGCGGNRSKDRRFEMGEISSNLADY 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            IVT DNPR E+P+ I  +I+ G+      +I   +R EAIR +I    + D++++AGKG
Sbjct: 399 TIVTSDNPRFEEPQDILNDIVVGVKRGKGDYIAILDRKEAIRHSILTAKEGDIILIAGKG 458

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLI 496
           HE    +  G K    D ++I+EI+  +
Sbjct: 459 HENYQEIR-GVKHHMDDRELIQEIVAEM 485


>gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dyadobacter fermentans DSM 18053]
 gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans
           DSM 18053]
          Length = 491

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 146/482 (30%), Positives = 232/482 (48%), Gaps = 25/482 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
             + +  +  +  DSR +  G +FVA+ G + DGH FI  A   GA AI+        + 
Sbjct: 20  HGYADVTVKNIILDSRKVLPGSLFVALRGTQVDGHQFITTAADLGAVAILCE------EL 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
              +R +   + V+++   +   A+  YG   +   ++ VTGT+GK+SVA+F+ Q+ +  
Sbjct: 74  PEHVREDITYIQVEDSAAAMGHIAAAFYGHPSKKVKLVGVTGTNGKTSVATFLFQLFRAL 133

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  S  +      I      +  TTP  + L   L+ ++++  +HV +E SSH + QHR+
Sbjct: 134 GYRSGLLSTVQNQIEDEVIPSTHTTPDAVALNALLAQMAARNCSHVFMEVSSHSVAQHRI 193

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G+    G FTN+  DH+D+H+T   Y  AK   F+ L PK + A++  DD   +     
Sbjct: 194 TGLHFAGGIFTNITHDHLDFHKTFDNYIKAKKGFFDAL-PKSAFALVNIDD---RRGTVM 249

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             N   RV +   Q       K+ +        + ++    +  F + G F  YN L   
Sbjct: 250 VQNTKARVETYSLQTLATFKGKIISDTLAG---MHMDINSQEVWFRVIGRFNAYNLLAVY 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G  + +G     VL  L  L   PGRFE   +      I  DYAHT ++LE +L+ I  +
Sbjct: 307 GAAVLLGEKEEAVLTELSNLKSPPGRFEQFHSADLIVGIV-DYAHTPDALENVLETITHL 365

Query: 380 TSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +G  +++ V GCGG+RD  KRP M +IA   ++  I+T DNPR EDP  I  ++  G+P
Sbjct: 366 RNGNEQVVTVVGCGGNRDAEKRPKMAEIACRYSNRVILTSDNPRFEDPMDILDQMRKGVP 425

Query: 438 -----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                      +R EAI  A       D++++AGKGHE    V  G K    D +++ E+
Sbjct: 426 PLDYKKTTVIEDRHEAILKAGLEAQPGDIILIAGKGHENYQDVK-GVKHHFDDKEVLMEV 484

Query: 493 LG 494
             
Sbjct: 485 FA 486


>gi|326621819|gb|EGE28164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 471

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 240/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A      
Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++  + V        +  +    D +    L G F V N L+A    +A+
Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+    +    
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI      DV+++AGKGHE   IV       S D      +LG+I
Sbjct: 418 EGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLDYS-DRVTAARLLGVI 470


>gi|304321491|ref|YP_003855134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
 gi|303300393|gb|ADM09992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
          Length = 480

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 185/490 (37%), Positives = 268/490 (54%), Gaps = 28/490 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DLI  D                + +I  +++DSR ++ G++F A+ G   DG  +I
Sbjct: 1   MRLSDLIPLD-------------GHLDAEITGLTADSRQVKPGFLFAALPGETTDGRRYI 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA         +++  +         +  P+L  DN R+ L++ A+R +   P+ I+ V
Sbjct: 48  DQA---------IAAGAAAILAPTGTTATVPVLADDNPRQALAMLAARFHAGQPKCIVGV 98

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVA FV Q+    G S+  +G    +   +    R TTP P+ L + +S +++
Sbjct: 99  TGTNGKTSVARFVAQLWSAFGHSAGTVGTLGASAPGYDYALRHTTPDPVELHQVISTMAA 158

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+++E SSHGL QHR DG++     FTN+ +DH+DYH + +AYF AKMRL   LLP
Sbjct: 159 MGTTHLAMEVSSHGLAQHRADGVRFSHAGFTNITQDHLDYHPSFEAYFAAKMRLLTALLP 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GK 298
           +   A+I  D A ++  ++ A  AG RVL+VG +G+ + L           +T+SVE G 
Sbjct: 219 ETGQAVITTDGAGAEGAIEAAQGAGRRVLTVGRRGETLKLLSCVPHQGGLALTVSVEEGP 278

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRG 355
                  L G+FQ  NALVAAGL IA G +   V+E + KL   PGR +  G        
Sbjct: 279 AQSVALSLIGDFQADNALVAAGLVIASGAEPEAVIEAMAKLSAAPGRMQPAGQKSCEGGM 338

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +VDYAHT +++   L+ I+     GR++VV G GGDRD+ KRP+MG+ A   AD+ I
Sbjct: 339 ASAFVDYAHTPDAIATALRAIKPHVPGGRVVVVIGAGGDRDRTKRPLMGRAAAAGADLVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           VTDDNPRSEDP  IR+++  G PG    G R  AIR   E L   DVL+V GKGHE    
Sbjct: 399 VTDDNPRSEDPAAIRSQVAEGAPGAQIIGGREAAIRAGAEALKAGDVLLVTGKGHEQTQT 458

Query: 475 VTNGEKKMSV 484
           + +       
Sbjct: 459 IGHVTYPFDD 468


>gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
 gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
          Length = 503

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 149/487 (30%), Positives = 239/487 (49%), Gaps = 29/487 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +N + +DSR +++G +F+A  G K DG  FI QAI QGA A++  +   + D + T  
Sbjct: 14  VPLNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQAILQGAAAVIWDAHNFVWDKAWT-- 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P + + + R      A  +YG+  +   ++ VTGT+GK+S   ++ Q    +G    
Sbjct: 72  --VPNIGISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNGKTSTCHWIAQALGDAGKKCA 129

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG       +  + +  TTP  I +   L+   + G    ++E SSH L Q R++G++ 
Sbjct: 130 LIGTLGNGFVNELEASANTTPDAIRVQGLLADFLNSGAQAAAMEVSSHALAQGRVNGVRF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL RDH+DYH   ++Y   K RLF+      + A+I  DDA+  E+  +  +  
Sbjct: 190 DVALLTNLSRDHLDYHGDMESYAATKRRLFD--WQSLNYAVINLDDAFGAELALQLVDKT 247

Query: 265 CRVLSVGYQGKFIHLKK-----------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V+  G   + + L +           +    +  +V +            + G F V 
Sbjct: 248 VEVIGYGTTDEALRLAERHGLRMVYGVVLEMDSHGMKVEVRSSWGAAQLSTQMVGRFNVS 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A G+ +   +     +  L  +  V GR + +G N +   + VDYAHT ++LE +L
Sbjct: 308 NLLGALGVLLVSDVTLDAAVASLNAVQPVTGRMQKLGGNDQ-PLVIVDYAHTPDALEKVL 366

Query: 374 -----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
                    T   G++I VFGCGGDRD+GKR +MG++A   AD  IVT DNPRSED ++I
Sbjct: 367 LALCEAAQGTKAGGQLICVFGCGGDRDRGKRAMMGRVAEKFADRCIVTSDNPRSEDAQQI 426

Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
             E+I G+         +R +AI  AI M  + D++++AGKGHE    +  G K    D 
Sbjct: 427 IGEVIAGMNEGRHEVISDRADAIGHAIAMAGRADIVLIAGKGHEDYQEIK-GVKHPFSDV 485

Query: 487 DIIREIL 493
           ++  + L
Sbjct: 486 NVATQAL 492


>gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 463

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 150/467 (32%), Positives = 238/467 (50%), Gaps = 25/467 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            ++ +S+ +    +F AI G  +DGH FI +AI +GA  +V    +         +    
Sbjct: 12  NITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPF---------KDFKN 62

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           I+VV++++K         +    E   ++ VTGT+GK+S    +  I  +       IG 
Sbjct: 63  IIVVEDSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAILSQK-YKGGIIGT 121

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               + +   +   TTP        LS    +G+  V+ E SSH LDQ R+   K  A  
Sbjct: 122 MYYKLGNEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSHALDQLRVYPTKFFATV 181

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T + YFNAK RLF++   +    ++  DD Y   + +   +   + +
Sbjct: 182 FTNLTQDHLDYHKTMENYFNAKRRLFKD--YEYEVCVLNIDDDYGSMLYEEFKD---KAI 236

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + GY  +  HLK        +      + K ++    L G+FQ YN   +  L   +G D
Sbjct: 237 TYGYS-ENAHLKIDYFDQENKVFGFYYKNKHYEIKTNLKGDFQAYNMGASILLGFYMGFD 295

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   +  L  +PGRFE +  N  G ++ +DYAHT ++LE +LK  + IT  R+I VF
Sbjct: 296 IEEIQRGILSLSSIPGRFETIELN--GVKVVIDYAHTPDALEKLLKTAKAITKNRLICVF 353

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445
           G GG+RD+ KRP MGKIA +L+DI+I+T DNPR E+   I  +I+ GI    G + + +R
Sbjct: 354 GAGGNRDKTKRPKMGKIASELSDISIITSDNPRFEESMDIIKDILEGIDPSKGPMVEEDR 413

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            +AI  A+++    DV+V+AGKGHE    +  G K    D + + + 
Sbjct: 414 KKAIALALDIALDGDVVVIAGKGHEDYQEIK-GVKYHFSDKEEVLKY 459


>gi|288549342|ref|ZP_05966779.2| hypothetical protein ENTCAN_05119 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318746|gb|EFC57684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 471

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 157/472 (33%), Positives = 239/472 (50%), Gaps = 14/472 (2%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR   +G +FVA+VG++ DG  +IPQAIAQG  A++  +     D         P++ 
Sbjct: 3   LDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAVIAEAKDEATDGEIREMHGVPVIY 62

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +    + LS  A R Y +  +   ++ VTGT+GK++    + Q  Q  G +   +G    
Sbjct: 63  LSQLNERLSALAGRFYHEPSDQLRLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGN 122

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +         TT S + +   L+ L+ QG +  ++E SSHGL QHR+  +K  A  FTN
Sbjct: 123 GLLGNVSPTENTTGSAVDVQHVLAGLAEQGASFAAMEVSSHGLVQHRVAALKFAASVFTN 182

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RV 267
           L RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A        
Sbjct: 183 LSRDHLDYHGDMEHYEAAKWLLYS--THHHGEAIVNADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++    G+++   +V        + ++    + +    L G F V N L+A    +A+G 
Sbjct: 241 INPNCHGRWLKAVEVKYHDRGATIRVASSWGEGEIESRLMGAFNVSNLLLALATLLALGY 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +L+  E+L  V GR E      +   + VDYAHT ++LE  L+  R   +G++  V
Sbjct: 301 PMAELLKTAERLQPVCGRMEVFSAPGK-PTVVVDYAHTPDALEKALEAARLHCAGKLWCV 359

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+P  I  +I+ G+           
Sbjct: 360 FGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDILAGMLDAGRARVVEG 419

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R EA+  AI    + DV+++AGKGHE   IV N     S D      +LG++
Sbjct: 420 RAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGNRRLDYS-DRVTAARLLGVV 470


>gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 519

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 163/489 (33%), Positives = 238/489 (48%), Gaps = 23/489 (4%)

Query: 8   YKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
             ++ +L+ +  I  ++  +R   I +V+ DSR +  G +FVAI G   DGH F+  AI 
Sbjct: 25  KMNYRDLLTEEEILEVRNGDRTEAITDVAYDSRRVGPGAMFVAIFGFATDGHRFVEAAIE 84

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGT 123
           QGA  IV  +        A    +   L V + R+ L   ASR +G   E I    +TGT
Sbjct: 85  QGAAVIVHQADL------ARYHDDVVYLKVTDCRRLLGHIASRFFGHPSEKITVTGITGT 138

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           +GK+S   F+  I + +G    ++G        +   +   TT         ++   + G
Sbjct: 139 NGKTSSTYFLTGILRAAGKKCARMGTIDNQIGDAVLDNKGRTTSESRDTQAFIAEAVAAG 198

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            + + +EASS  LD  RL  +      FTNL +DH+DYH+T +AYF AK RLF++    E
Sbjct: 199 CSDLVMEASSQALDLDRLTDVHFDYALFTNLTQDHLDYHKTFEAYFEAKARLFDQ---TE 255

Query: 242 SPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK 298
             AII  DD + ++++ R        ++++ G        L  V         T+    +
Sbjct: 256 KAAIINRDDPWGRKLINRIRERHPKLKIITYGEDPAADYRLSAVDCTTGGSTFTLQAGDE 315

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G F VYNA+         GID A +   L    VV GR E + TN     I
Sbjct: 316 KETIFLDVLGRFMVYNAVGTIIAAREQGIDWAAIKAALADAPVVEGRMERIKTN-LDFDI 374

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE +LK ++ +  GR+I VFGCGGDRD GKRP+MG IA   AD +++T D
Sbjct: 375 VVDYAHTPDALENLLKTVKELARGRVIAVFGCGGDRDHGKRPLMGAIAAKEADFSVLTSD 434

Query: 419 NPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           N RSEDPE I  +I   +      +    +R EA   A+    K DV++ AGKGHE    
Sbjct: 435 NSRSEDPEAILDDIEAAVRPITDQYTRIADRREATVYALTHARKDDVVIFAGKGHEKTET 494

Query: 475 VTNGEKKMS 483
             NG +   
Sbjct: 495 SRNGVRPYY 503


>gi|86749112|ref|YP_485608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572140|gb|ABD06697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 485

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 210/488 (43%), Positives = 281/488 (57%), Gaps = 20/488 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   D        +   +Q     +  ++ DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDLFSDD--------TAITVQAAALDVGGLAVDSRAVKPGDVFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    AI   +     D         P + + N R+ L+L A+R++ + P+ I AV
Sbjct: 53  A-------AAIEAGAVAVAGDHPPAGDLAVPFVRLTNPRRALALAAARMFPQQPQTIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G +S  IG    ++ + +    LTTP PI L ++L  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDAIAR 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +L+ 
Sbjct: 166 EGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVV 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296
               A+I AD   S EV+  A   G R++SVG  G     I L         Q++T+   
Sbjct: 226 DGGAAVISADHDCSAEVIDAARARGLRLISVGRNGDAGAGIRLIAAAVDGFAQRLTLDHA 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+++    PL GEFQ+ NALVAAGL I  G D A V   L+ L   PGR E VG    G 
Sbjct: 286 GRNYQVHLPLVGEFQIENALVAAGLVIGTGGDPAAVFAALDHLEGAPGRLELVG-ERNGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD  IVT
Sbjct: 345 PVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAESADAVIVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPR EDP  IRA I+   PG  E G+R EAIRTAI  L   D LV+AGKGHET  IV 
Sbjct: 405 DDNPRREDPATIRAAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464

Query: 477 NGEKKMSV 484
           +     S 
Sbjct: 465 DTVLPFSD 472


>gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
 gi|15988380|pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
          Length = 498

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 249/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E + DSR   AG +FVA+VG++ DG  +IP
Sbjct: 4   NLRDLLAPWVPD-----------APSRALREXTLDSRVAAAGDLFVAVVGHQADGRRYIP 52

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 53  QAIAQGVAAIIAEAKDEATDGEIREXHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 112

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S   G     +         TT S + +   L+ L 
Sbjct: 113 VTGTNGKTTTTQLLAQWSQLLGEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 172

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  + E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  A   L+ E  
Sbjct: 173 DQGATFCAXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSE-- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 231 HHCGQAIINADDEVGRRWLAKLPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFS 290

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T   
Sbjct: 291 SSWGDGEIESHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRXE-VFTAPG 349

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+ G IA + AD+A+
Sbjct: 350 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLXGAIAEEFADVAV 409

Query: 415 VTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G            R EA+  A+    + DV++VAGKGHE 
Sbjct: 410 VTDDNPRTEEPRAIINDILAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKGHED 469

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N     S D   +  +LG+I
Sbjct: 470 YQIVGNQRLDYS-DRVTVARLLGVI 493


>gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 487

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 152/496 (30%), Positives = 248/496 (50%), Gaps = 29/496 (5%)

Query: 10  DFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  ELI  +     +   E  +  +++DSR ++ G +FVAI G   DGH +  QA AQGA
Sbjct: 2   NLAELIEVIQTQKTERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYAKQAEAQGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            AIV             +    P+++V +T + ++  A + Y    E +  + +TGT+GK
Sbjct: 62  VAIVSER---------LLDVTIPVILVRSTTRAMAELAGKFYDYPSEKMRMIGITGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  + V+ +  + G  +  IG     I      +R TTP    L      +  +GV  V
Sbjct: 113 TTTTTIVRDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQMHQEGVEDV 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKES 242
            +E SSHGL+  R+ G       FTNL  DH+D+H+T + Y  AK  LF +L   L  + 
Sbjct: 173 IMEVSSHGLELGRVTGTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQLGQRLSDKK 232

Query: 243 PAIIYADDA--YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
            A++ ADD   +  E+M      G RVL+ G  Q   +  K +     +   T+  + + 
Sbjct: 233 VAVLNADDEISHLFEMM-----TGARVLTYGIEQPADLQAKNITQTLQETTFTMVYQEQA 287

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +      G F VYN L+A G+ ++IG     +   + ++    GR + +     G  IY
Sbjct: 288 VELTVQFIGRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQRLPI--DGYNIY 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + +E  LK +  +    II + G GG+RD  KRP+MG++A   A   ++T D+
Sbjct: 346 VDYAHTPDGIEQCLKALVDVPKENIIFLIGTGGNRDVTKRPMMGQLASTYAGTVVITTDD 405

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PR E  E I + I  G+    F+E G+R EA+R A  +    +++++AGKGHE   I+ +
Sbjct: 406 PRFESYESITSGIASGMLHDQFVEIGDREEAVRYAASLARPDNIVILAGKGHEKYQIIGD 465

Query: 478 GEKKMSVDCDIIREIL 493
            EK    +  +++E++
Sbjct: 466 -EKTPLDEEALVKEMI 480


>gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri DSM 4166]
          Length = 487

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 231/476 (48%), Gaps = 14/476 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P    +  I E++ DSR ++ G +F+A+ G + DG   +  AI         + AY  
Sbjct: 8   LLPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAI----ARGAAAVAYES 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
           +     +     ++ V +    LS  A R YG+   N+  + VTGT+GK+SV+  + Q  
Sbjct: 64  EGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQAL 123

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            R G     IG   T      +  R TTP  I +   L+ L  +G   V++E SSHGLDQ
Sbjct: 124 DRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  ++     FTNL RDH+DYH T +AY  AK RLF   +P  S  +I  DD + + +
Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFG--VPGLSCRVINLDDGFGRAL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 +     S+     +++  +     +     +     +     PL G F V N L
Sbjct: 242 AGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNVL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  + +      +L  L +L    GR + +G   R   + VDYAHT ++LE +L  +
Sbjct: 302 AAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDR-PLVVVDYAHTPDALEKVLTAL 360

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    GR++ +FGCGGDRD GKRP+M ++A  LAD  +VTDDNPR+E PE+I  ++  G 
Sbjct: 361 RPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILDDVRSGF 420

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                      R +AI   I   N  DV+V+AGKGHE    +  GE+    D +  
Sbjct: 421 VNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKGHEDYQEIR-GERLPFSDIEEA 475


>gi|282899876|ref|ZP_06307837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195146|gb|EFA70082.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 495

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 154/491 (31%), Positives = 240/491 (48%), Gaps = 12/491 (2%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  EL+  +     Q ++ ++  + ++S     G +F+ I G + DG  F P A+A GA 
Sbjct: 2   NLRELLAVIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAGAV 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A ++S   + +       S+  ++   +  K  +   +  YG   E +  + VTGT+GK+
Sbjct: 62  AAIISPQAASKTPPT---SDALVITATSLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++    ++ L +  +G   T  + F+Q    TTP  I L   L+     G     
Sbjct: 119 TTTHLIEYFLNQANLPAALLGTLYTRWTGFSQVANRTTPFAIDLQHNLAQAVDAGCQLGI 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q R+ G       FTNL +DH+DYHQ  + YF AK  LF     +   A+I
Sbjct: 179 MEVSSHSLVQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDYLQ-GRAVI 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +            S+        +  +    +     +     +  F  PL
Sbjct: 238 NIDDHYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNSPFSSPL 297

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365
            G++ + N L A    + +G+D   V++++     VPGR E +  N      + VDYAHT
Sbjct: 298 VGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQINPHQDISVIVDYAHT 357

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +SLE +LK  R    GR+I VFGCGGDRD+ KRP MG+IA DLAD+ +VT DNPR+E+P
Sbjct: 358 PDSLENLLKAARPFIPGRMICVFGCGGDRDKTKRPKMGRIAADLADVVVVTSDNPRTENP 417

Query: 426 EKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I  +I+ G+P  +     G+R  AI TAI      D +++AGKGHE   I+   EK  
Sbjct: 418 DAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQILGT-EKIH 476

Query: 483 SVDCDIIREIL 493
             D +  R+ L
Sbjct: 477 FDDREQARDAL 487


>gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
 gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
          Length = 484

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 151/477 (31%), Positives = 229/477 (48%), Gaps = 27/477 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +   +  V+ ++  ++ G IFV + G + DGH    + +++GA  IV             
Sbjct: 19  QNAVVTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTDHDIKCGK---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
                  LV DNTR  L+   +  YGK  E +  LAVTGT+GK++ A FV+ I    G  
Sbjct: 75  ------QLVTDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTTLGKK 128

Query: 144 SFQIGPTS--TISSFAQDNRLTTPS---PIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              +G     T S   + ++  TP+      L   L  + S G  +  +EASS  LDQ+R
Sbjct: 129 CGCVGTAGNDTCSGELKPSQHGTPTVPRATVLYSWLGEMVSNGADYCVMEASSQALDQYR 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +   ++    FTNL RDH+DYH T + YF AK R+F         A+I  DD Y K + +
Sbjct: 189 IGDERIAVAGFTNLTRDHLDYHGTMENYFQAKRRVFT----MCKTAVINIDDEYGKRLAQ 244

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +      + G         ++ A      +    E         + G + V N+L A
Sbjct: 245 EFSDIAVTYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVDMNMTGLYNVQNSLCA 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +  A+G D     + L  L  V GR   V        +  DYAHT ++L  +L  ++ 
Sbjct: 305 IAMVTALGFDMTECAKALSDLDGVDGRMNVV--YRGDFTVITDYAHTDDALIKVLSTLKP 362

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +T GR+I VFG  GDRD+ KRP+M K A D ADI ++T DNP  E+P++I  E++ GI G
Sbjct: 363 LTKGRLICVFGAAGDRDKEKRPMMAKAAEDNADILVITSDNPAHENPDEIIREVMTGISG 422

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                   +R EAI  A++   K DV+ + GKGHET  I+ + E     + +I+++I
Sbjct: 423 KKPCRCITDRREAIAYALDTARKDDVIALCGKGHETYQIIGD-EYLPFSEKEIVKDI 478


>gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 524

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 156/490 (31%), Positives = 232/490 (47%), Gaps = 34/490 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR ++ G  F+A  G K DG  FIP AI +GA A+V         F+      T
Sbjct: 33  EHLAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVVWERDG----FAWDPEWKT 88

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P L V + +      A  LY    + +  + VTGT+GK+S + ++ Q        +  IG
Sbjct: 89  PNLPVPDLKSEAGFIADYLYDHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAAVIG 148

Query: 149 PTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     + +  TTP  + L   ++    +G   V++E SSHG+ Q R++G      
Sbjct: 149 TLGAGFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSHGIVQGRINGATFAVA 208

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TNL RDH+DYH T + Y  AK RLF         A++  DD +  +++      G  +
Sbjct: 209 MLTNLSRDHLDYHGTMEVYAAAKARLFH--WRGLKYAVLNLDDVFGMQLLHDLEGTGTGM 266

Query: 268 LSVGYQG-----------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +  G+             + +  + + A     +  I  EG+   F   + G F   N L
Sbjct: 267 IGYGFTDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFNASNLL 326

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                 +A GI     +  L+K+  V GR + +G       I VDYAHT ++LE +L  +
Sbjct: 327 GVLATLLASGIAFPEAVRALQKVQPVAGRMQQIGGEGDEPLIVVDYAHTPDALEKVLTTL 386

Query: 377 RTITS------------GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           R                GR++ VFGCGG+RDQGKRP+MG++A  LAD AI+T DNPRSED
Sbjct: 387 REAVDAGFPGGKPETGSGRLVCVFGCGGERDQGKRPLMGEVATRLADEAIITSDNPRSED 446

Query: 425 PEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           P+ I   I  G       + +R  AI  AI   +K DV+++AGKGHET      G+K   
Sbjct: 447 PDSIIRGIAVGAAANHRIEKDRAAAIHRAIRGTHKGDVVLIAGKGHETWQE-AGGKKFPF 505

Query: 484 VDCDIIREIL 493
            D ++ R+ L
Sbjct: 506 SDAEVARKAL 515


>gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 505

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 152/514 (29%), Positives = 234/514 (45%), Gaps = 34/514 (6%)

Query: 1   MK-----LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MK     L D +++     + ++        E +I E+S DSR +  G +F  + G K  
Sbjct: 1   MKVSIKELADFLFR--RRCLKKIIEAGTNCLENEILEISIDSRQVGEGALFCCLEGTKRK 58

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F   A  +GA A++ S                P L+V +  +   L ++ LYG    
Sbjct: 59  GVEFAQDAQRRGAVAVLTSERVD--------DLAIPQLIVKDAGEACGLASAYLYGLPTS 110

Query: 116 NIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAK 172
            +L   VTGT+GKS+    ++ I     +    IG          +D   TTP    +  
Sbjct: 111 KLLMIGVTGTNGKSTTTYLIKSILDTGDMKCGLIGTIVYNDGKSHEDADRTTPQAPLIQS 170

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+ +         +EASSHG++Q R+ G       FTNL  +H+DYH   + YF AK  
Sbjct: 171 LLNKMVDNRCHACVMEASSHGIEQKRIFGCLYDRAVFTNLTPEHLDYHGDMENYFCAKRD 230

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQ 289
           LF + +  +  A I  DD Y +++   A+     VL    + K     +     +     
Sbjct: 231 LFIKYMRGDWKASINTDDPYGEKI---ANEFAPHVLGFSLRQKADNAFYGSIRRSSIRGI 287

Query: 290 QVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            + IS        +   PL GE+ V NAL A+ +  ++  D+ ++ + LE    VPGR E
Sbjct: 288 IMDISFPDGSTLENVTLPLLGEYNVLNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLE 347

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                  G    +DYAHT ++LE +L  ++ + SGR+ +VFG GG+R +  RPI+G IA 
Sbjct: 348 RYFVE-DGPVCIIDYAHTPDALEKVLSTVKPLCSGRVWLVFGHGGERFKENRPILGSIAA 406

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
             AD  +VT DNPRSEDP  I  +I  GI        +    +R EA+  A++   K DV
Sbjct: 407 RFADCIVVTMDNPRSEDPRDIALQIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDV 466

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           ++V GKG E   I+         D + ++E   L
Sbjct: 467 VLVTGKGPER-QIIFKDRTIPYNDFEALKEWCNL 499


>gi|225416617|ref|ZP_03761806.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
 gi|225041863|gb|EEG52109.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
          Length = 498

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 153/508 (30%), Positives = 237/508 (46%), Gaps = 36/508 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D +     EL+           E ++++VS DSR  + G +FV + G + D HLFI
Sbjct: 1   MVLSDWLEGLDYELL-------QGSLEVQVSDVSYDSRKAKEGDVFVCMTGTRVDSHLFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
           PQ    G   IV+     L++    +     +L V + R+ L+L ++  +G     ++  
Sbjct: 54  PQVEEAGVRVIVIERP--LEELLKAVSPQVTVLRVKDGRRALALLSAARFGYPARKMITV 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ I + +G     IG   T I      N  TTP    L +A + +
Sbjct: 112 GVTGTKGKTTTTHMIKAILEAAGKKVGMIGTNGTVIGDRVTPNLNTTPESYQLHQAFADM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
              G  ++ +E SS G+  HR DG+    G FTN+  DHI  D H     Y   K RL  
Sbjct: 172 VEAGCEYMIMEVSSQGIKMHRTDGLFFDYGLFTNISPDHIGPDEHADFGEYLYYKSRLMT 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++   D + + ++K A    CR+ +              A + +     + 
Sbjct: 232 ----MCKVGLVNRGDEHYEGIIKDA---SCRLYTYCVAEGDGASADFEARNIRYVAEENF 284

Query: 296 EGKDF--------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            G +F        D    +PG F V NAL A  LC  +G+D   +   LE +  + GR E
Sbjct: 285 VGTEFDVTGWLSMDVRLGIPGLFNVDNALAAMSLCSFMGLDKQRMSHALEHIR-INGRME 343

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V T+ R   + VDYAH + S+E +L  +R     R++ VFGCGG+R + +R  MG+I  
Sbjct: 344 IVHTSKR-CTVLVDYAHNAVSMESLLGTLRNYHPKRLVCVFGCGGNRSKDRRYSMGEIGG 402

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLV 463
            +AD+ I+T DN R E PE I A+I   I      F+E  +R +AI  +IE     D++ 
Sbjct: 403 RMADLCILTADNSRYEKPEDIIADIRSSIEKTGGDFVEIPDRRQAIEYSIENARPGDMIA 462

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           + GKGHE    +  G +   +D ++I E
Sbjct: 463 IIGKGHEDYQEIC-GVRHHFLDREVIEE 489


>gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 485

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 152/471 (32%), Positives = 241/471 (51%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             N   +++D+ R  L   AS  Y + P+  L + G +G +   S    I +  G     
Sbjct: 73  --NVSYILIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPIT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     I     +   TTP  + L K       + + +V +E SSH L+  R++ +  
Sbjct: 130 RIGTIEYKIGDKVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVEVLDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINN-SVINVDDEYGKRLYDEFIVDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G +   +         +   + +  + +     F L G+F +YN L A G+ + 
Sbjct: 249 PEIISYGIENGDLEGD----YSDDGYIDVKYKNQIEKVKFSLLGDFNLYNTLGAIGIALK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +G  
Sbjct: 305 IGISMEEILKRVSNIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARNIKNGSR 363

Query: 385 IV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           I+ +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I  ++  G      + 
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGFIKSDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|256827373|ref|YP_003151332.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
 gi|256583516|gb|ACU94650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
          Length = 494

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 168/491 (34%), Positives = 256/491 (52%), Gaps = 18/491 (3%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            EL   +    +   +  ++ ++  S  + AG  F  IVG   DGH F   AI  GA  I
Sbjct: 6   RELFEGIDCTFLGNADEPVSGIAYRSDAVTAGDAFFCIVGTNVDGHSFAQDAIDHGARVI 65

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           V      L D      ++   ++V +TR+ ++  A+  YG    +  ++ +TGT+GK++ 
Sbjct: 66  VAQRKVYLAD-----ATDVVEIIVSDTRRAMAAAAANFYGHPSTDFHLVGITGTNGKTTT 120

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              V+ I + +G ++  IG     I+   +    TTP  + L    + +   G   V++E
Sbjct: 121 TYLVEHIAEVAGRTTGVIGTVGNRIAGRLEHAERTTPESVDLQHLFARMRDAGCDTVAME 180

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH LD  R  G      +F+NL +DH+DYH+T +AYF AK  LF    P      I  
Sbjct: 181 VSSHALDLERTWGTHFAVTAFSNLTQDHLDYHKTFEAYFEAKALLFSSDYPARRV--ICI 238

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD + +E+++R   AG R+LSVG+      H   V        V + V G+++   +PL 
Sbjct: 239 DDKWGQELLRRCAAAGDRILSVGFDPAAQIHPVSVKYATTHTDVVLDVRGQEYSLTYPLV 298

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTS 366
           G F V N ++A G+ + +GI   +VL  L +   VPGR + +   +  G  ++VDYAHT 
Sbjct: 299 GRFNVSNVMLALGIGLELGIPIEVVLRALSESPQVPGRLQRISAVHDGGISVFVDYAHTP 358

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   +  +  +T GR+IVVFGCGGDRD  KRP+MG+ AL   D A+VT DNPRSEDP+
Sbjct: 359 DALRKAISAVANLTDGRVIVVFGCGGDRDATKRPLMGQAALSG-DFAVVTSDNPRSEDPD 417

Query: 427 KIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I ++I+ G+    E+     +R EAI  AI + N  D ++VAGKGHE   I+   E   
Sbjct: 418 AIISDILEGMESASERFEVHPDRREAIARAIALANTGDAILVAGKGHEDYQILAT-ETIH 476

Query: 483 SVDCDIIREIL 493
             D ++  E L
Sbjct: 477 FSDAEVAGEEL 487


>gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 501

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 170/509 (33%), Positives = 253/509 (49%), Gaps = 31/509 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L+DLI   +  E+  +L        +  +  +  DSR +    +FVAI G   DGH +
Sbjct: 1   MRLKDLINSIELVEIAGELH------EDTPVGSICFDSRKVGPNAVFVAIRGFNTDGHQY 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I QA+   A AIV        +   +  S+   L V ++R+ L+  A R Y    +   +
Sbjct: 55  INQAVEADAMAIVCE------EIPKSWSSHQLFLKVWDSREALAKIAKRFYENASDELKV 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ I   + + +  IG T  I  +   +   TTP  + L +    
Sbjct: 109 IGVTGTNGKTTTTGMIKCILDANEIKTGLIGTTGYIIGNQLYELDRTTPDALELHQLFHK 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   V +E SSH L   R  GI+     FTNL  DH+D+H +  AY +AK  LF+ 
Sbjct: 169 MLEAGCRAVVMEVSSHALALKRTAGIRFDIAVFTNLTHDHLDFHGSMTAYADAKKLLFDN 228

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-------FIHLKKVCAIHNKQ 289
           L  + + A+I ADD Y+++++K       R   +  + K        +  K      N  
Sbjct: 229 L-SESAFAVINADDDYAEKMVKDCKANIVRCGVINAREKELENPIIDVMAKVFSYTINGT 287

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              I+ +       F   G+F +YN + A    +A G D   ++  L K   V GR + V
Sbjct: 288 SAIIADDKNSMMHQFRTLGKFNMYNTVEAYAAGLAFGFDRIHIIRGLMKCPPVRGRMQQV 347

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +      I  DY+HT ++LE  L+ I  +    GRII +FGCGGDRD+ KRP+MGKIA 
Sbjct: 348 WSKDHRCAIV-DYSHTPDALENALQTICLVKPENGRIITLFGCGGDRDKEKRPLMGKIAE 406

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D +DI I+T DNPRSEDPEKI  +I  GI     F    +R  AIR AI +L + DV ++
Sbjct: 407 DNSDIIIITSDNPRSEDPEKILDDIQAGIHKQNNFYRIVDRETAIRKAITLLTRGDVALI 466

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHET   +  G+K    D +II  + 
Sbjct: 467 AGKGHETYQEIA-GKKFHFDDKEIIESVF 494


>gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
 gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
          Length = 485

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 159/471 (33%), Positives = 244/471 (51%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK N +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMK------ 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             N   +++D+ R  L   AS  Y + P+  L + G +G +   S    I +  G     
Sbjct: 72  -YNVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     +     D   TTP  + L K       + + +V +E SSH L+  R+D I  
Sbjct: 130 RIGTIEYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGRVDVIDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L  K   ++I  DD Y K +        
Sbjct: 190 DCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKND-SVINIDDDYGKRLYDEFIIDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  + +     F L G+F +YN L A G+ + 
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +  R
Sbjct: 305 IGISMEEILKRVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNIKNVNR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           II +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  G      +I
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGFIKSDDYI 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ A+ M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKAAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|74310704|ref|YP_309123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sonnei Ss046]
 gi|73854181|gb|AAZ86888.1| meso-diaminopimelate-adding enzyme [Shigella sonnei Ss046]
          Length = 497

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 174/507 (34%), Positives = 256/507 (50%), Gaps = 27/507 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           QAIAQG  AI+  +    +  D         P++ +    + LS  A R Y +  +N+  
Sbjct: 54  QAIAQGVAAIIAEAKAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    + Q  Q  G +S  +G     +         TT S + +   L+ 
Sbjct: 114 VGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAG 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E
Sbjct: 174 LVEQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE 233

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  AII ADD   +  + +  +A        ++    G+++    V    +   + 
Sbjct: 234 --HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIR 291

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            S    D +    L G F V N L+A    +A+G   A +L+   +L  V GR E V T 
Sbjct: 292 FSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTA 350

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+
Sbjct: 351 PGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADV 410

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           A+VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGH
Sbjct: 411 AVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGH 470

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           E   IV N     S D   +  +LG+I
Sbjct: 471 EDYQIVGNQRLDYS-DRVTVARLLGVI 496


>gi|262273818|ref|ZP_06051631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
 gi|262222233|gb|EEY73545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
          Length = 495

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 169/501 (33%), Positives = 254/501 (50%), Gaps = 25/501 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DL+   +  +            +  I  ++ D+R I  G +FVA+ G+  D   FIP 
Sbjct: 6   LKDLLAPWYDAI-----------PDTLITGLTLDNRQITPGDVFVAVQGHSLDARRFIPA 54

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI  GA A++         F  T++   P++   + +  LS  A R Y    +   ++ V
Sbjct: 55  AIEAGAAAVIADDGDIHGQFDVTMQGGVPVVAFPHLKSTLSDIAGRFYQSPSQGMTVIGV 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V+  V Q     G  +  +G T             TT S + + + L+  + 
Sbjct: 115 TGTNGKTTVSQLVAQWIDLLGGKAAVMGTTGNGFLDALAPALNTTGSALDIQQQLAAFNQ 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG THV++E SSHGL Q R+  +   A  FTNL RDH+DYH T +AY  AK+RLF     
Sbjct: 175 QGATHVAMEVSSHGLVQDRVKAVAFDAAIFTNLSRDHLDYHGTMEAYAEAKLRLFTH--Y 232

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISV 295
               ++I ADD      +     A    +S      +QG+ + L  V    +   +T   
Sbjct: 233 GSPVSVINADDPVGMRWLGSMPEAVAVSMSEKAVHQHQGRKLWLTAVDYATSGVSITFDS 292

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              + +F  PL GEF V N LV+    +A+G + A +L    +L  V GR E      + 
Sbjct: 293 SWGEGEFTTPLVGEFNVMNLLVSLATLLALGYEKAALLASATQLQAVVGRMEVFHRPDKP 352

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAHT ++LE  L  +R    G++  +FGCGGDRD GKRP+M  IA  LADI I+
Sbjct: 353 MCVV-DYAHTPDALEKALHALRRHCDGKLWCIFGCGGDRDIGKRPMMADIAEKLADIVIL 411

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPRSE P+ I A+++ G+      I   +R +A   A+E  ++QDV+++AGKGHE  
Sbjct: 412 TDDNPRSESPQAIVADMLRGMTDPDKAIILHDRAQACSYALENASEQDVILIAGKGHEDY 471

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            ++ +G    S D D +R +L
Sbjct: 472 QVLASGTVHYS-DRDTVRRLL 491


>gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens
           200]
          Length = 500

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 147/509 (28%), Positives = 238/509 (46%), Gaps = 32/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F           +   ++  NE++ DSR I+ G +F+A+ G++ DG  FI
Sbjct: 2   MLLRDLLAPWF-----------IYSGDQSFNELTLDSRAIRRGDVFLALPGHRVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYG------ 111
            +A+  GA  ++V +  + Q     +  N      +      + +S  A++ Y       
Sbjct: 51  DKALDLGAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFA 110

Query: 112 -KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIY 169
                 I+ +TGT+GK+S +  + Q+    G  +  +G     +     D+  TT   I 
Sbjct: 111 VTPSLGIIGITGTNGKTSTSQLIAQLVTSLGRKAAVMGTLGNGLWGELVDSGNTTADAIT 170

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  A
Sbjct: 171 LMRQLHEFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYTAA 230

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIH 286
           K  LF          ++  DD   +  +    +   ++      G+Q    + K      
Sbjct: 231 KQSLFR--FSTLGHGLLNLDDPVGETWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDD 288

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                T+     +     PL G F + N L A       G D   + E ++ L  V GR 
Sbjct: 289 QGVSATLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRM 348

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E   T      + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A
Sbjct: 349 ERFTTADN-ITLVVDYAHTPDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAA 407

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              AD  +VT DN RSEDP +I ++II G+      + + +RI AI+  + +    D+++
Sbjct: 408 EQYADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLIL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +AGKGHET      G +    +  + R++
Sbjct: 468 LAGKGHETYQE-AAGVRHNYDERALARQL 495


>gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 502

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 149/474 (31%), Positives = 228/474 (48%), Gaps = 18/474 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRSNT 90
            V+ DSR ++ G +F+A  G+  DG  +I +AIA GA A+    A +   DF+       
Sbjct: 29  GVTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGTPDFAWNRTWQV 88

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L V   R+     A+ +YG+  E +  +AVTGT+GK+SV+ ++     R       IG
Sbjct: 89  ANLAVAGLRELCGPLANAIYGRPSERLSLIAVTGTNGKTSVSQWIAATHPR---RCAVIG 145

Query: 149 PTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +     +   TTP+   L + L+  +       ++EASS G+ + RLDG ++   
Sbjct: 146 TLGAGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASSIGIAEGRLDGARVDVA 205

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T  AY  AK RLF    P+   A+   DD + +E+   +       
Sbjct: 206 VFTNLTRDHLDYHATMAAYAQAKARLFA--WPRLRLAVSNLDDPFGRELAALSTATKVIG 263

Query: 268 LSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +              + +    +  +  +            L G + V N L  A + I
Sbjct: 264 YTQQAGADDRQGTIRAENIEETIDGLRFRLCAPNGRALVESGLLGRYNVSNLLAVAAVLI 323

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G+    V E   +L   PGR E +G       + VDYAHT ++LE  L  +R + + R
Sbjct: 324 DAGLTPKAVAERFAQLSSPPGRLEKIG-GHNEPLVIVDYAHTPDALESALMALRPVANAR 382

Query: 384 ---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
              ++V+FGCGGDRD+GKRP+M  +A   AD  ++T DNPRSE+   I A+I+ G P  +
Sbjct: 383 GAGLVVIFGCGGDRDRGKRPLMAAVAARHADRVVLTSDNPRSENEHAILADILAGAPTAL 442

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +R EAIR  +   +  DV+++AGKGHE    +  G ++   D    R  L 
Sbjct: 443 VIADRGEAIRRTLLAAHPADVVLIAGKGHEPYQEIA-GVRRPFSDGAQARAALA 495


>gi|148556853|ref|YP_001264435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
 gi|148502043|gb|ABQ70297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
          Length = 487

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 193/496 (38%), Positives = 280/496 (56%), Gaps = 15/496 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+   FP      +       + +I   + D R +  G +F A  G++ +G  FI
Sbjct: 1   MRLTDLLAG-FP------ATTGADAGDARITGFAIDHRKVAPGTVFGAFRGSRFNGEDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+A GA AIV +   ++     +       +V D  R+  +  A+R +   P+  +AV
Sbjct: 54  AQAVADGAAAIVSAPGVAV----GSAIGGAVHIVDDEPRRLFARLAARFFAPFPDTTVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ + +G  +  IG    T +       LTTP  +     ++ L  
Sbjct: 110 TGTNGKTSTVELTRQLWRMAGFHAASIGTLGVTTADEQVSTGLTTPDIVTFLSNMAGLRK 169

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH T +AYF AK+RLF E++ 
Sbjct: 170 EGVTHAAFEASSHGLSQYRTEGLPVRAAAFTNLSRDHLDYHGTMEAYFAAKLRLFTEVVD 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  A+++ADD  S EV+      G R+LSVG  G+ I L +       Q + + +EGK 
Sbjct: 230 QDGAAVVWADDPRSVEVIAAVRARGVRLLSVGAAGETIRLVERTPTALGQTLKLEIEGKA 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PL G +Q  NALVAAGL +A G +  L L +L+++  V GR E    +  G  IY
Sbjct: 290 REVKLPLIGAYQAANALVAAGLVVATGGEIGLTLANLQRVAPVRGRLERAAISRTGAPIY 349

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE  ++ +R  T  R+I VFG GGDRD GKRP+MG+++  L+D  IVTDDN
Sbjct: 350 VDYAHTPDGLEAAIEALRPHTEARLITVFGAGGDRDTGKRPLMGEVSARLSDRTIVTDDN 409

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSEDP  IR +++ G  G IE G R EAI  AI      D++++AGKGHE   IV  G+
Sbjct: 410 PRSEDPAAIRRDVMAGATGAIEIGGRREAIAAAIAEAQAGDIVLIAGKGHEQGQIVGAGD 469

Query: 480 K---KMSVDCDIIREI 492
           +       D  + RE 
Sbjct: 470 QMRVLPFDDVTVAREC 485


>gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
 gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
          Length = 483

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 194/499 (38%), Positives = 272/499 (54%), Gaps = 27/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +                 +  I  V++DSR ++ G+ F A+ G+  DG  + 
Sbjct: 1   MKLSQLLGE----------AATAGLGDLDIAGVTADSREVRTGYAFFAVPGHAGDGLGYA 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A+GA  +V   A  +         + P++VV + R  L+  A+R Y + P  + AV
Sbjct: 51  ADARARGASVVVAPRAAEV---------SLPLVVVPDVRASLAHAAARFYPRQPRIVAAV 101

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGKSSV  F++QI    G  +  +G    I  S A    LTTP P+ L + L  L +
Sbjct: 102 TGTSGKSSVVDFLRQIWIALGREAASLGTIGLIDKSGAHYGALTTPGPVALHQTLDELCA 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASS G+DQ RLDG++L  G+FTN  RDH+D+H+  + YF AKMRLF+ LL 
Sbjct: 162 GGVTHLAMEASSLGIDQRRLDGVRLCVGAFTNFSRDHLDHHRDLEEYFAAKMRLFDTLLQ 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I AD A ++ V       G  +  VG +G+ I L  V       ++T+   G+ 
Sbjct: 222 TGQTAVIDADSAVAERVAAVCAARGLALFDVGAKGRAIELLSVAPSALATRLTLRHAGET 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +D   PL G FQ+ NALV+AG+ IA G     V   L  L   PGR E +G    G  ++
Sbjct: 282 YDVDLPLAGGFQISNALVSAGMAIASGEAPGRVFAALASLRGAPGRLELIG-QRDGAPVF 340

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L+ +L   R +  GR++VVFG GGDRD+GKRP+MG+IA   ADI +VTDDN
Sbjct: 341 VDYAHKPDALDKVLATARELAKGRLVVVFGAGGDRDKGKRPLMGEIAARAADIVVVTDDN 400

Query: 420 PRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           PRSE+P       + A    G     E G+R  AI TAI  L   D L+VAGKGHE+  I
Sbjct: 401 PRSEEPAMIRAAIVAAARAAGSAQIHEIGDRRAAIETAISWLRDGDALIVAGKGHESGQI 460

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       D  ++   L
Sbjct: 461 IGDQVLP-FSDRAVVEAAL 478


>gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 489

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 161/496 (32%), Positives = 248/496 (50%), Gaps = 21/496 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M  + +  +   +L+  L    +Q  E +I   +  DSR I  G IFVA+ G   DGH F
Sbjct: 1   MANRRIKRRIMEKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AI +GA+ I+VS     Q            +++ N RK L + AS  YG  P+  + 
Sbjct: 61  IDTAIEKGAKLIIVSKEVPCQ-------KGIGYVLIKNLRKHLGILASNFYG-WPQKNIK 112

Query: 120 VTGTSGKSSVASFVQQICQRSGL-SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
           + G +G +   +    + Q  G     + G     I     +   TTP  + L + +   
Sbjct: 113 ILGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G+ ++ +E SSH L+  R++ ++     FTNL  DH+DYH+T + YF AK +LF +L
Sbjct: 173 YEEGLEYIIMEVSSHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K +  I+  DD Y K + +  H      +S G +   +  K +     K++V +S+ G
Sbjct: 233 RGK-AIKILNVDDEYGKRLQEEFHG-----ISYGTKQAGVQGKILGFEGGKERVELSLFG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    + G F +YN L +  L   +G+    +   +E L   PGRFE V    +   
Sbjct: 287 KKKECKIQILGGFNLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDC-GQDYM 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT ++LE IL+ I+ I + +II +FGCGGDRD  KRPIM +IA   +D  ++T 
Sbjct: 346 VVIDYAHTGDALENILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTS 405

Query: 418 DNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPR+E+PE I  E+  G      I    R EAI   I    K D++++AGKGHET  I+
Sbjct: 406 DNPRTENPESILEEVKGGFTKENHICVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQIL 465

Query: 476 TNGEKKMSVDCDIIRE 491
              +K    D +  R 
Sbjct: 466 GR-KKYHFDDREFARR 480


>gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 500

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 164/497 (32%), Positives = 239/497 (48%), Gaps = 33/497 (6%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +LI  L    +     R I  ++ DSR ++ G++FVAI G + DGH FI        
Sbjct: 3   NLQDLIAVLPDKTVTGPAGRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFI-------- 54

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              V   A ++           P + V ++R  L L AS  YG    +++ V  T     
Sbjct: 55  AEAVARGAAAVVGERPLALEGVPYVQVPSSRLALGLLASAFYGHPSASLVMVGVTGTNGK 114

Query: 129 VA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                 ++ + +  G  +  IG    I +  +     TTP    L K L+ +  +G+TH 
Sbjct: 115 TTTTHLIRWVLEAGGHPTGLIGTVHNIIAGRSLPVERTTPEAADLQKLLAAMRDEGMTHA 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------- 237
            +E SSH L   R+ G     G FTNL +DH+D+H + + Y  AK RLF  L        
Sbjct: 175 VMEVSSHALALQRVAGCAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFSRLGRNEIPGT 234

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
             P    A+I ADD + + +  R   +   V++ G      I  ++V       +  +  
Sbjct: 235 TKPGPKAAVINADDPWGEFMAAR---SNAPVVTYGLNRPADITARQVEVEPGGIRFILVS 291

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F VYNAL AAG  +A+G+D A V   LE L  VPGR E +    + 
Sbjct: 292 PKGEAPVRLRLTGRFNVYNALAAAGAGLALGLDPATVARGLESLQAVPGRLERID-RGQP 350

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + VDYAHT + L+ +L+++R +   GR+I VFGCGGDRD+GKRP MG I+  LAD  +
Sbjct: 351 FAVIVDYAHTPDGLDNVLRSVRELAGQGRVICVFGCGGDRDRGKRPQMGAISARLADYTV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPRSEDPE I  +I  G+       +    +R  AIR A+E+    DV+V+AGKGH
Sbjct: 411 LTSDNPRSEDPEAILDDIEAGVRRVPGAAYERVTDRAAAIRRALELARPGDVVVIAGKGH 470

Query: 470 ETVHIVTNGEKKMSVDC 486
           E   I  +       D 
Sbjct: 471 EDYQIFADRTIH-FDDR 486


>gi|54293892|ref|YP_126307.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
 gi|53753724|emb|CAH15182.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
          Length = 483

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 155/504 (30%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDF-PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+      ++I           +  ++++ +DSR ++ G +F A  G   DG L+
Sbjct: 1   MKLTQLLEPWIKRDII-----------DGTVSDIKNDSRLVKEGDLFAAYPGAASDGRLY 49

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
           I     +   +   +  Y   +    I   +  P + +    + L   A R +    +  
Sbjct: 50  I----EKAVASGAAAVVYEPNNLPQGITLPTAIPCIAIPQLAEKLGEIAKRFFNNPSQFL 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKAL 174
            +  VTGT+GK+++A  + Q     G  S  IG          +    TTP  + L + +
Sbjct: 106 GLTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGKVDALKPLENTTPDALCLQRLM 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +G+  V +E SSH L QHR+D ++     FTNL  DH+DYHQT QAY  AK RLF
Sbjct: 166 HQYKEEGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTI 293
           E    +   AII  DD   +++M        + ++ G +Q   +   +        ++ +
Sbjct: 226 ER--SELQWAIINQDDD-CQDLMSNVLKTHVKKVTYGMHQNCDVKAIQWNMDITGTEIEV 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                         G+F +YN+L      +A G +   V++ + +L   PGR E V   +
Sbjct: 283 KSPWGHHLLKIKALGKFNIYNSLAVYSSLLASGYNPEKVVQIMAELKAAPGRMEIV---A 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT ++LE +L  ++ I  GR+ VVFGCGGDRD+ KRPIMGK A   AD  
Sbjct: 340 QSPYVLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNI 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++T DNPRSEDPE I  EI  G+P      +  NR EAI  A+      D++++AGKGHE
Sbjct: 400 VITSDNPRSEDPEIILNEIACGMPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           +   + N  K +  D +++R ++ 
Sbjct: 460 SYQQIGN-TKHVFSDQEVVRRLMN 482


>gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 485

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 152/471 (32%), Positives = 241/471 (51%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             N   +++D+ R  L   AS  Y + P+  L + G +G +   S    I +  G     
Sbjct: 73  --NVSYILIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPIT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     I     +   TTP  + L K       + + +V +E SSH L+  R++ +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVEVLDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINN-SVINVDDEYGKRLYDEFIVDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G +   +         +   + +  + +     F L G+F +YN L A G+ + 
Sbjct: 249 PEIISYGIENGDLEGD----YSDDGYIDVKYKNQIEKVKFLLLGDFNLYNTLGAIGIALK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +G  
Sbjct: 305 IGISMEEILKRVSNIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARNIKNGSR 363

Query: 385 IV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           I+ +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I  ++  G      + 
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGFIKSDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Azoarcus sp. BH72]
 gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Azoarcus sp. BH72]
          Length = 501

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 154/484 (31%), Positives = 229/484 (47%), Gaps = 31/484 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +++DSR +  G +F A  G+  DG  +I  AI +GA A++                  P
Sbjct: 21  GITADSRRVGPGAVFAAWPGHVTDGRRYIASAIERGAAAVLWEEGDGFHPGELP----VP 76

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              V   R+     A  +Y +    +    VTGT+GK++V  ++ +     G     +G 
Sbjct: 77  GFAVPRLRELAGALAHEIYDRPSARLWMAGVTGTNGKTTVTQWLARALGELGSRCGIVG- 135

Query: 150 TSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             T+ S   D       TTP  + L   L+ L  +G    ++E SS GLDQ R++G++  
Sbjct: 136 --TLGSGFPDQLSASLNTTPDALELHATLARLLGEGAAAAAMEVSSIGLDQGRVNGVEFD 193

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-G 264
              FTNL RDH+DYH+T  AY  AK RLF   LP  S A+I  DDA+     +R   A  
Sbjct: 194 VAVFTNLTRDHLDYHRTMDAYAEAKARLFA--LPGISRAVINLDDAFGLTQARRLVAAGQ 251

Query: 265 CRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             V+               + +   ++ A  +  Q ++   G+  D    +   F V N 
Sbjct: 252 VDVIGYTCVASNADAVPGARVLVADRLQASPSGLQFSLHWAGRQSDLQVRMVAPFNVSNL 311

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L   G  +  G+     L  + +L+   GR + VG       I +DYAHT ++L  +L+ 
Sbjct: 312 LAVIGALVMRGVAVEEALAVVGRLNPPEGRMQLVGGIGE-PLIVIDYAHTPDALAKVLEA 370

Query: 376 IRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK-IRAE 431
           +R       GR++ VFGCGGDRD GKRP+MG++A  LAD  +VT DNPRSEDP K I A 
Sbjct: 371 VRGTVRSRGGRLVCVFGCGGDRDPGKRPLMGEVARQLADRVVVTSDNPRSEDPRKIIDAI 430

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                       +R EAIR A+      DV+V+AGKGHE    + +G++    D +  + 
Sbjct: 431 AAGAGASADCIVDRAEAIRIAVGEAGPDDVVVLAGKGHEPYQEI-HGQRLPFSDVEQAKA 489

Query: 492 ILGL 495
            L +
Sbjct: 490 ALAV 493


>gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 502

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 155/502 (30%), Positives = 241/502 (48%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L  +   + I   +         +I  + +DSR I+ G +FV + G   DGH +I
Sbjct: 1   MNLKSLTERLILKTITGSTA-------VEITNLDTDSRAIRPGGLFVCVPGFNVDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI  GA AI+             +  N   + V +TR+ L + A+  +G   E   ++
Sbjct: 54  EHAIQNGAVAIMAEKELPE------LPGNITRITVPDTRRVLPILANSFFGNPTEQLKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V ++   S   +  IG     I    +    TTP  I L +    +
Sbjct: 108 GITGTNGKTTTTHMVDKVLNDSNRKTGIIGTLYMKIGDHVEKTLNTTPDTIQLQRYFHAM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G T+  +E SSHGLD  R+ G       FTNL  DH+D+HQ  ++Y N K  LF +L
Sbjct: 168 VAHGGTYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQNMESYRNTKELLFTQL 227

Query: 238 LPKE----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
              +       ++ ADDA S    KR      ++++ G      +    +    +  +  
Sbjct: 228 GNSDRDMQKKVVLNADDAASSYYGKR---TSAQIVTYGIHNPADVRALHIQNTGDGCRFI 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       DF   + G   VYNAL A   C+  GI    +   L+    V GRF+ + T 
Sbjct: 285 VETPWGSSDFTMKVYGVHNVYNALAAITTCLLEGIPIQEIRNSLQDFAGVHGRFQEIKT- 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            R  R+ VDYAH  + L+  L + + ITSG++I V GC G+RD+ KRPIM  IA   +D 
Sbjct: 344 DRSFRVVVDYAHNPDGLKATLLSAKEITSGKMICVMGCRGERDRLKRPIMADIAASYSDY 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            + T DNP SEDPE+I AE++ G+       +    NR +AI+ A+EM   QD +++ G+
Sbjct: 404 VLFTTDNPFSEDPEQIIAEMLGGLSSHHAVNWEVVPNRKDAIQRAVEMAGDQDRIIITGR 463

Query: 468 GHETVHIVTNGEKKMSVDCDII 489
           GHET + V   +     D +++
Sbjct: 464 GHETRY-VAGSQVDSFSDEEVV 484


>gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
 gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
          Length = 490

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 167/507 (32%), Positives = 248/507 (48%), Gaps = 39/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L DL+ +        L    +Q  E+ ++ E+++DSR +  G  FV I G   DGH +
Sbjct: 1   MRLTDLLER--------LEYEVVQGSEKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           + +   +GA+A++V       D          ++ VD+TR  L+L ++  +G   E   +
Sbjct: 53  VKEVAEKGAKAVIVEKQVEAPD-------GVTVIHVDDTRYALALMSAAYFGYPAEQLKV 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT GK++    V+ I +  G     IG   T I   A     TTP    + K    
Sbjct: 106 IGITGTKGKTTTTYMVKSILEGVGHKVGLIGTIETLIGGKAIPASNTTPESFTIHKYFKE 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +   G   V +E SS GL  HR  GI+   G FTNLG DHI    H+  + Y   K  LF
Sbjct: 166 MVDAGCDCVVMEVSSQGLMLHRTAGIEFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGILF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ--QV 291
            +        I   DD + ++V +   NA CR  + G+ +   +    V  I       V
Sbjct: 226 TQC----RLGIANVDDRWFEDVFR---NATCRTETFGFSEKADLRATDVEHISRPGYLGV 278

Query: 292 TISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              V G  DFD    +PGEF VYN+L A  +C    + +  + +   K+  V GR E V 
Sbjct: 279 KYHVSGLMDFDVEIDIPGEFSVYNSLTAIAVCRHFDVPAEEIKKA-LKVAKVKGRIEMVK 337

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             S    + +DYAH + SLE +L  +R    GR++ VFGCGG+R + +R  MG+++  LA
Sbjct: 338 V-SDDFTLMIDYAHNAMSLESLLATLRDYDPGRLVTVFGCGGNRSRTRRFEMGEVSGKLA 396

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D  ++T DNPR E+P+ I  +II GI      +    +R EAIR AIE     DV+++AG
Sbjct: 397 DFTVITSDNPRFEEPQAIIDDIITGIERTDGKYTAICDRKEAIRYAIENGRPGDVIILAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHET   +  G K    D  +I E+L
Sbjct: 457 KGHETYQEIK-GVKYDMDDRVLIAEVL 482


>gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
 gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
          Length = 487

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 159/466 (34%), Positives = 245/466 (52%), Gaps = 16/466 (3%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           S  + +G +FVA  G  EDG  FIP A+A+GA  IV     +L +      +   ++ VD
Sbjct: 28  SAKVVSGGVFVAASGTAEDGARFIPDALARGATVIVAGPGIALPEG-----AKAALVTVD 82

Query: 97  NTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153
             RK L L A+   G  +    ++ VTGT+GK++V+  ++++   +G     +G  +   
Sbjct: 83  EPRKALGLLAAARCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGKKVGVLGTVAYRW 142

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +D  LTTP  + + ++L+ +++ G     +EASSH LDQ RL G+   AG FTNL 
Sbjct: 143 PGVTRDASLTTPDCLTIHESLAAMAAAGCDLAVMEASSHALDQDRLAGLSFAAGVFTNLT 202

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +DH+DYH+  + YF AK +LF E LP  + A++  DD +   ++K    A    L+    
Sbjct: 203 QDHLDYHKDMETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAAVGYGLTKAPA 262

Query: 274 GKFIHLKK--VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           G    L         + Q +      + F+   P+PG     N L A G  + +G+    
Sbjct: 263 GFARLLVGGIRSHDRDGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALTLGLPYE- 321

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
             + L   H  PGR E +  N+ G  ++VDYAHT ++LE +L   R  T+GR+  VFGCG
Sbjct: 322 TFDALADCHGAPGRLERIP-NASGLTVFVDYAHTPDALENVLGAAREFTAGRLFAVFGCG 380

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEA 448
           GDRD+ KRP M +    LAD+A++T DNPR E P  I  +   G+      I + +R  A
Sbjct: 381 GDRDRTKRPRMAEAVSRLADVAVLTSDNPRHEAPLAIIEDAKPGLAKARKVIIEPDRRRA 440

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           I  A++ +  +DVLV+AGKGHE+   + +  K    D  ++RE+ G
Sbjct: 441 IALALDAMRPEDVLVIAGKGHESYQQIGD-VKHPFSDAAVVRELTG 485


>gi|17229155|ref|NP_485703.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc sp. PCC 7120]
 gi|21362694|sp|Q8YWF0|MURE_ANASP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17135483|dbj|BAB78029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Nostoc sp. PCC 7120]
          Length = 496

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 169/500 (33%), Positives = 253/500 (50%), Gaps = 17/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       ++ +   P    + ++  + ++S    AG +F+ + G + DG  F 
Sbjct: 1   MKLRELLAT-----VDSVENLPPVLADAEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA GA A +VS     ++          ++  +N  K  +  A+  YG   + +  +
Sbjct: 56  PSAIASGAIAAIVSPQAVEKNPP---HDEAVVISSNNMTKACAAIAAAFYGYPGQKLKLV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++ LS+  +G   T    F Q    TTP  + L + L+  
Sbjct: 113 GVTGTNGKTTTTHLIEFFLTKAKLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G     +E SSH L Q R+ G     G F+NL +DH+DYH   + YF AK  LF   
Sbjct: 173 VNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPE 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   AII ADD Y + ++K          SV      + +  +    N    TI    
Sbjct: 233 YLK-GRAIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGTIHTPE 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356
            +  F  PL G++ + N L A G  + +G++  L+   + +   VPGR E V  N  +  
Sbjct: 292 GNVSFRSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPEFPGVPGRMERVQINPDQDI 351

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKI  +LAD+A VT
Sbjct: 352 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIVAELADLAFVT 411

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I  +I+ GIP  ++    G+R  AIRTAI      D +++AGKGHE   
Sbjct: 412 SDNPRTEDPDRILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQ 471

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 472 ILGT-EKIHFDDREHARAAL 490


>gi|322615944|gb|EFY12861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620728|gb|EFY17588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623920|gb|EFY20757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627368|gb|EFY24159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630675|gb|EFY27439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638105|gb|EFY34806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322676402|gb|EFY72473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|323216558|gb|EGA01284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219907|gb|EGA04385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225813|gb|EGA10033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228645|gb|EGA12774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236741|gb|EGA20817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239758|gb|EGA23805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242194|gb|EGA26223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249382|gb|EGA33298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252285|gb|EGA36136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256625|gb|EGA40355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262994|gb|EGA46544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265479|gb|EGA48975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271733|gb|EGA55151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 471

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 163/474 (34%), Positives = 239/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A      
Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++  + V        +  +    + +    L G F V N L+A    +A+
Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+    +    
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+   I      DV+++AGKGHE   IV       S D      +LG+I
Sbjct: 418 EGRAEAVTNVIMQAKDNDVVLIAGKGHEDYQIVGTQRLDYS-DRVTAARLLGVI 470


>gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
 gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
          Length = 483

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 146/502 (29%), Positives = 238/502 (47%), Gaps = 32/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+     ++  ++S         ++  ++ DSR++  G IF+A  G + DG+ F 
Sbjct: 1   MNLKELLNNIEAKIYGKVS-------PIEVRNLTKDSRNVGFGDIFIANKGKQFDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI  GA AI  S           + SN P L         +  +++ Y    + +  +
Sbjct: 54  PLAIENGAIAIASSIYNPFLSVVQIVSSNLPQLE--------AELSAKYYNYPSKKLCIV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V+  ++ +       S  IG     + +    +  TTP    L K L+ +
Sbjct: 106 GVTGTNGKTTVSHLIKTLFDGCNKPSGLIGTIEHVLGNNRIQDGYTTPESCLLQKYLAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +T   +E SS GL   RL  +    G  TN+  DH+D+H + + Y NAK++LF +L
Sbjct: 166 VKNRLTSAVMEVSSVGLVLERLAEVDFDVGVLTNITLDHLDFHGSFEEYINAKLKLFSKL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
            P    A++  D +Y+   ++         ++ G +         + +        +   
Sbjct: 226 -PATGLAVVNGDLSYASRFLEMTQAQP---ITYGIECPADYRAMHLRSSPFGTDFDLVYR 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+      PL G+  VYN L A  +       D   ++     +    GR E V +    
Sbjct: 282 GESLPCRLPLIGKHNVYNILAAIAVAHQHCNGDLQQLISLAANVESPRGRLEPVFSGPCP 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             IY+DYAHT ++LE + K +  +    G++IVVFGCGGDRDQ KR IM ++       A
Sbjct: 342 --IYIDYAHTPDALENVCKTLHALLPEQGKLIVVFGCGGDRDQSKRQIMAEVVERY-GFA 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +VT DNPR EDPE+I   I  G     F  + +R +AI  A+ + + +D+++VAGKGHET
Sbjct: 399 VVTSDNPRGEDPEEIIKAICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHET 458

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I  +       D +I+RE+L
Sbjct: 459 YQIFKHQTI-AFDDKEIVREVL 479


>gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
 gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
          Length = 523

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 150/486 (30%), Positives = 248/486 (51%), Gaps = 16/486 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L+  L +     ++R+IN +S DSR +  G +F A  G ++ GH +I  A+ +GA A
Sbjct: 26  LSDLLAGL-VSVGTAQDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGAAVGKGAVA 84

Query: 71  IVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           +       L     +     + P++ + +    L + A R Y +  + +  + VTGT+GK
Sbjct: 85  VAYDPIIPLSSVVHAGLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVMGVTGTNGK 144

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SV+ F+ Q   +       IG     +    + ++LTTP  + + + L+   + G  + 
Sbjct: 145 TSVSHFLAQALHQQEAPCGLIGTLGVGLMGALKPSQLTTPDAVTVQEQLAVTRAAGGRYA 204

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E +SH L+Q R++G+      FTNL R+H+DYH     Y  AK RLF +  P    A+
Sbjct: 205 VMEVTSHALEQGRVNGVIFNTAIFTNLSREHLDYHGDMTRYGAAKFRLFGQ--PGLRHAV 262

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFL 303
           I  DD   +  +     A   V+S G       L+      +++ + ++++G   + + +
Sbjct: 263 INVDDTAGEAFLAHLP-AEVTVISYGLTNPQASLRVNELHCDRRGIVMNIQGPWGEGELI 321

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G F  YN L A G  +  G+     L+ L ++  V GR E +G  +    + VDYA
Sbjct: 322 CPLLGRFNAYNLLAALGGLLTTGMPFTEALQRLSQVQAVAGRMEPMGGAAGEPLLVVDYA 381

Query: 364 HTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++LE  L ++R       R+  VFGCGG+RD+GKRP+MG +A   AD  ++TDDNPR
Sbjct: 382 HTPDALEQALCSLRAHLEPGARLWCVFGCGGNRDRGKRPLMGAVAERWADFVMLTDDNPR 441

Query: 422 SEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            EDP +I  EI+ G+          +R EAI  A+E+   +D++++AGKGHE    V   
Sbjct: 442 DEDPRQIIIEILSGMEAPDRVYQLRDRAEAISRAVELAGSKDIVLIAGKGHEEYQQVGTE 501

Query: 479 EKKMSV 484
           ++  S 
Sbjct: 502 QRPFSD 507


>gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 494

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 243/503 (48%), Gaps = 33/503 (6%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +L + L+   ++   + +I  + +DSR ++ G +F+ + G+  DGH F  QA  +GA
Sbjct: 2   NLKQLSSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHQFAAQAAGKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            A+VV     +         + P ++V ++R  ++  A+  Y +      ++ VTGT+GK
Sbjct: 62  AALVVERKLEV---------DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ I    GL +  IG         +     TTP  + L + L+ +++ G    
Sbjct: 113 TTTTYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECC 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----- 240
            +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK   F  L        
Sbjct: 173 VMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDE 232

Query: 241 --ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG 297
                A++ ADD  S    K+       V++ G  +   +    +          +    
Sbjct: 233 SARKYAVLNADDDASAYFAKQTA---AEVITYGLGEDADVRASNISITAQGTSFHVDTFR 289

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    + G+F VYNA+ A    +  G+    +   LE +  V GR E V    +   
Sbjct: 290 GSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVVD-EGQPYA 348

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE +L+ +     GR++ VFGCGGDRD+ KRPIMGKIA   +D+  VT 
Sbjct: 349 VIVDYAHTPDGLENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYSDVVFVTS 408

Query: 418 DNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DNPR+EDPE I  +I  G+         +    +R +AI  AIEM +  DV+++AGKGHE
Sbjct: 409 DNPRTEDPELILKDIEAGLVEDGVATESYKLIVDRRKAIEKAIEMASPGDVVLIAGKGHE 468

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  ++  GE     D  + ++ +
Sbjct: 469 TYQLIA-GEVLDFDDRIVAKDAI 490


>gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 491

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 152/496 (30%), Positives = 238/496 (47%), Gaps = 28/496 (5%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
              L+N+L  + M      ++ I ++  DSR +  G +F  I G   DGH F  QAI +G
Sbjct: 4   LRSLLNKLPSYEMVGDNNIDQSITDLHMDSREVTQGSLFFCISGYTVDGHDFATQAIEKG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
             AIV     ++           P++ V ++++ +++ +S  Y      +  + VTGT+G
Sbjct: 64  TVAIVAEKDLNVA---------VPVIKVTSSKRAMAIISSAFYDYPSSKLHLIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    +++I + +  ++  IG               TTP  + L K  S +  +GV  
Sbjct: 115 KTTTTHLIEKILRDAEKNTGIIGTMYMKYKDKEVAVNNTTPESLVLQKGFSTMVQEGVNV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-- 242
           V++E SSH L+  R+ G       FTNL +DH+D+H+T + Y  AK  LF +L  + S  
Sbjct: 175 VTMEVSSHALELGRVHGTHFNVAVFTNLSQDHLDFHETMENYARAKGLLFAQLGNQFSDK 234

Query: 243 ---PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK 298
               A++  DD     +          ++S G +G   +   K+          +S+  +
Sbjct: 235 SQPVAVLNRDDDTFDLLETMTAAP---IISYGIKGNADLKASKIQLHEEGTSFNMSISNE 291

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G F VYNAL AA      GI    + E L  +  V GRFE V        +
Sbjct: 292 SCSVSMKMAGTFSVYNALAAAAAAYVSGIPLQAIGESLSNMDGVAGRFERVELEED-FHV 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT +SL+ +L+ I+    G++ VV GCGGDRD+ KRP M  IA +L+D   +T D
Sbjct: 351 IVDYAHTPDSLKNVLETIKEFAKGKVSVVVGCGGDRDKTKRPKMAAIAEELSDFVYLTSD 410

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPRSEDP  I  ++  G+ G  +     R +AI  AI    K +V+++AGKGHET   + 
Sbjct: 411 NPRSEDPVSILKDMESGMKGSSYKVIVERRDAIYEAIRQAKKDEVILIAGKGHETYQTI- 469

Query: 477 NGEKKMSVDCDIIREI 492
             E     D  + +E 
Sbjct: 470 GKENHFFDDRLVAKEA 485


>gi|323165968|gb|EFZ51748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella sonnei 53G]
          Length = 492

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 171/493 (34%), Positives = 253/493 (51%), Gaps = 16/493 (3%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +
Sbjct: 3   DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62

Query: 76  AYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVAS 131
               +  D         P++ +    + LS  A R Y +  +N+  + VTGT+GK++   
Sbjct: 63  KAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQ 122

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            + Q  Q  G +S  +G     +         TT S + +   L+ L  QG T  ++E S
Sbjct: 123 LLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVS 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E       AII ADD
Sbjct: 183 SHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADD 240

Query: 251 AYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              +  + +  +A        ++    G+++    V    +   +  S    D +    L
Sbjct: 241 EVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHL 300

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N L+A    +A+G   A +L+   +L  V GR E V T      + VDYAHT 
Sbjct: 301 MGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTP 359

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P 
Sbjct: 360 DALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPR 419

Query: 427 KIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N     S
Sbjct: 420 AIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYS 479

Query: 484 VDCDIIREILGLI 496
            D   +  +LG+I
Sbjct: 480 -DRVTVARLLGVI 491


>gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii str. Madrid E]
 gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii]
 gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE
           (murE) [Rickettsia prowazekii]
 gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii Rp22]
          Length = 480

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 157/478 (32%), Positives = 249/478 (52%), Gaps = 23/478 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ++  +I  +S++S+ ++   +F AI G   DG+ FI  A+  GA  ++  +  +      
Sbjct: 9   FKNHRIKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNTAIDK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V++  K L       Y K P+N+++VTGT+GKSSV S++ Q        +
Sbjct: 68  -------VIYVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQAYSLLKKKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG        + +     P       +   K    L+   + +++ EASSHGL+Q RL
Sbjct: 121 AFIGTIGLEIFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGLEQGRL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K+   SFT+  +DH+DYH T++ Y  AK++LF + L     AI+ +D    + V   
Sbjct: 181 GKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            HN   + ++VG +G    + K+      Q +        ++    + G FQ  N L+AA
Sbjct: 241 LHNNNVKFITVGKKGDLQ-ITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAA 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 G     ++E L K+  + GR E +     G  I+VDY+HT +SLE  L  ++ I
Sbjct: 300 LTLYYTGFKFDEIIEALAKVKPIKGRMERI----DGTNIFVDYSHTPDSLEKALIELKNI 355

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                ++ V+FGCGGDRD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEII GI 
Sbjct: 356 KLHGSKLSVIFGCGGDRDKTKRALMGQIAAKLADNVIITDDNPRFEDPKLIRAEIIRGIG 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              + E  +R EAI+  I  L + D+L++AGKGHET  I+ + +K    D +++R+ L
Sbjct: 416 TATYTEIASRAEAIKYGINNLKQDDILLIAGKGHETYQIIGD-KKLPFDDSEVVRKYL 472


>gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
 gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
          Length = 500

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 150/465 (32%), Positives = 235/465 (50%), Gaps = 26/465 (5%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           S   +   +F  I G K DGH F   A+ +GA  ++   A  LQ          P ++V+
Sbjct: 37  SHQCEENSLFCCIPGEKHDGHSFASDAVQRGAAVLLCQHALPLQ---------VPQIIVE 87

Query: 97  NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STI 153
           N+R  +   A+ +YG   +   +  +TGT+GK++ +  ++ I + +G     +G      
Sbjct: 88  NSRWAMGFAAAAVYGFPSKQVSLYGITGTNGKTTSSYMIRSILEEAGEKCGLMGTIVYAD 147

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               Q+   TTP    + + ++ +   G T V +EASSHG +Q RL+G       FTNL 
Sbjct: 148 GEKEQEADRTTPESCDVQRLIARMKRNGCTSVIMEASSHGANQGRLNGCLFQGMVFTNLT 207

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            +H+DYH+  + YF AK +LFEE + +     + +DD Y + +++       + LS G  
Sbjct: 208 PEHLDYHKDMEHYFEAKKKLFEEYVSENWCGAVNSDDEYGRRLLRIYGK---KCLSFGLD 264

Query: 274 GKFIHLKKVCAIHN---KQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               H  ++   +    +  + +     D  D   PL G F +YNAL A  +C  +G+  
Sbjct: 265 STRHHDVQLQNFYMTLSELSMKVQFFNSDPIDITLPLTGRFNIYNALGAMAICYKMGVAP 324

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            ++ + LE +  VPGR E     +    +  DYAHT ++LE +L  +R +  G+II VFG
Sbjct: 325 LVIKKGLESMPQVPGRLEKYFFENEVCGVV-DYAHTPDALENVLSALREVCHGKIISVFG 383

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------ 443
            GG+R Q  RP++G++A  LADI IVT DN RSEDP KI   I  GI   +E        
Sbjct: 384 HGGERYQANRPLLGQVAARLADIIIVTMDNSRSEDPAKIAEAIEQGIASVVEAPPHYRIL 443

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           +R EA+RTA+ M    DV+VV GKG E   ++ N + + +    I
Sbjct: 444 DRNEAVRTALSMAKPGDVVVVTGKGPERFIVMDNNKIEYNDSHAI 488


>gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 479

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 164/487 (33%), Positives = 248/487 (50%), Gaps = 23/487 (4%)

Query: 11  FPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+  L    +Q  E +I   +  DSR I  G IFVA+ G   DGH FI  AI +GA+
Sbjct: 1   MEKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAK 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            I+VS     Q            +++ N RK L + AS  YG   +   IL VTGT+GK+
Sbjct: 61  LIIVSKEVPCQ-------KGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++Q+         + G     I     +   TTP  + L + +     +G+ ++ 
Sbjct: 114 TTTYLLEQLLGE--EKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYEEGLEYII 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L+  R++ ++     FTNL  DH+DYH+T + YF AK +LF +L  K +  I+
Sbjct: 172 MEVSSHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-AIKIL 230

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y K + +  H      +S G +   +  K +     K++V +S+ GK  +    +
Sbjct: 231 NVDDEYGKRLQEEFHG-----ISYGTKQAGVQGKILGFEGGKERVELSLFGKKKECKIQI 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F +YN L +  L   +G+    +   +E L   PGRFE V    +   + +DYAHT 
Sbjct: 286 LGGFNLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDC-GQDYMVVIDYAHTG 344

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE IL+ I+ I + +II +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+PE
Sbjct: 345 DALENILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPE 404

Query: 427 KIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
            I  E+  G      I    R EAI   I    K D++++AGKGHET  I+   +K    
Sbjct: 405 SILEEVKGGFTKENHICVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQILGR-KKYHFD 463

Query: 485 DCDIIRE 491
           D +  R 
Sbjct: 464 DREFARR 470


>gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
 gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
          Length = 507

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 144/514 (28%), Positives = 244/514 (47%), Gaps = 33/514 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L++L+        +      +  ++  I  ++ DSR    G++F+A+ G   DG  ++
Sbjct: 1   MQLKNLLAALEQPPTHIYGANTLPEQDT-ILGLAYDSRKAAPGYLFIAVPGVHTDGRRYV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A   GA   + +   S  D         P + V++ R  L+  A   YG     +  +
Sbjct: 60  ADAAQHGAVVALGAPLPSAIDLP------IPYIEVEDVRTALADLACAFYGFPARELCTI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALS 175
            VTGT GK++ ++ +  +   +G  +  +   +   +  +     R +T   + + + L 
Sbjct: 114 GVTGTDGKTTTSNIISTLFDAAGRRTGMMTTANFKLNGQEWANATRQSTLEALEIQEFLR 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +     TH  +E++SHGL+  R+ G     G  TN+  +H+D+H+T  AY  AK RLFE
Sbjct: 174 KMVEMQATHAVIESTSHGLELQRVRGCAFDVGVVTNITHEHLDFHKTLDAYRRAKARLFE 233

Query: 236 ELLPK-------ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHN 287
            L P+          AI+  DD+ S EV+K        +L  G +    +    +    +
Sbjct: 234 MLDPEQDKGQGYRKVAILNKDDS-SYEVLK--PYCRVPILDYGIETDAAVRAVDLHLQAS 290

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +    + +   +     PL G F V N L A     + GI   ++ + L  +  VPGR E
Sbjct: 291 RTAFRLILPDAECQIETPLIGRFNVSNCLAAIATAYSQGIPLDVITQTLATIKGVPGRME 350

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +    +   + VDYAHT++SL+ +L  +R +T+G+++VVFG  G+RD+ KRP+MG +A 
Sbjct: 351 HIDEK-QNFSVIVDYAHTADSLQKVLAILRPVTTGKLMVVFGSAGERDRQKRPVMGSVAA 409

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQ 459
            ++D  ++TD++PR ED E I  EI  G           F+   +R EAI TA       
Sbjct: 410 QMSDFFVITDEDPRDEDRESILREIAVGAEQAGKQEGSDFLCIADRREAIATAFSRAQPG 469

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D +++AGKGHE   I+   +K    D  + RE L
Sbjct: 470 DTVLLAGKGHEQSIIIGR-DKLPWDDRQVAREEL 502


>gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS223]
 gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS223]
          Length = 499

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/508 (29%), Positives = 239/508 (47%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+                    +  N+++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWL-----------HYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPE- 115
            +A+  GA A++V +  + Q      R N      I V   +R+  ++ A R    H   
Sbjct: 51  EKALDLGAAAVLVHTDDADQHGKVLHRDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSA 110

Query: 116 ----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYL 170
                ++ +TGT+GK+S +  + Q+    G  +  +G     +     D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHN 287
             LF          ++  DD   +  +    +   ++      G+Q    + K       
Sbjct: 231 QSLFR--FSTLGHGLLNLDDTVGESWLTELKSVPAQMWGFSIEGHQAAAFYTKDAKFDDQ 288

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+     + +   PL G F + N L A       G D   + E ++ L  V GR E
Sbjct: 289 GVSATLVWPEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRME 348

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              T ++   + VDYAHT +++E  L  +R    G +  VFGCGGDRD+GKRP+MG+ A 
Sbjct: 349 RFTT-AKNITLVVDYAHTPDAIEQALNALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAE 407

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++
Sbjct: 408 QYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILL 467

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AGKGHET      G +    +  + R++
Sbjct: 468 AGKGHETYQE-AAGVRHDYDERALARQL 494


>gi|300869516|ref|ZP_07114098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332489|emb|CBN59296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
          Length = 516

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 163/518 (31%), Positives = 255/518 (49%), Gaps = 30/518 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+    P +   +S       + ++  ++++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLKELLA-TIPNISLSISH---PALDSQVKGLATNSHACQPGDLFLGMPGTRVDGGDFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI----------------RSNTPILV-VDNTRKFLS 103
             AIA GA A +VS+  + +                          P ++ V +  +  +
Sbjct: 57  QGAIASGAIAALVSTQAAEKALEQGSGGAGERGSGGAGERGSEGEVPCIIPVVDMTQACA 116

Query: 104 LFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDN 160
             A+  YG       ++ VTGT+GK++    ++ +  ++ L +   G   T    F +  
Sbjct: 117 HIATAFYGYPGNQLKLVGVTGTNGKTTTTHLIEFLLSKAELPTALFGTLYTRWPGFQETA 176

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TTP  + L K L+     G     +E SSH L Q R+ G       FTNL +DH+DYH
Sbjct: 177 IHTTPFAVELQKQLAAAVEAGSKFGIMEVSSHALAQSRVLGCPFEVAVFTNLTQDHLDYH 236

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +  + YFNAK  LF     K   AI+ ADDAY + ++   ++      S       +   
Sbjct: 237 RDMEDYFNAKALLFSSNYLK-GRAIVNADDAYGRRIIDSLNSEQVWSYSTNDSKADLWAS 295

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +    N  +  +     + DF  PL G++ + N L A G  + +G++ + ++ +L +  
Sbjct: 296 DLKYEPNGVKGILHTPKGEADFYLPLVGQYNLSNLLAAVGAGLHLGLELSAIVLNLPEFP 355

Query: 341 VVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            VPGR E V  +  +   + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KR
Sbjct: 356 GVPGRVEKVQISPVQDISVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKR 415

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEML 456
           P MGKI  +LAD+ +VT DNPR+EDPE+I  +++ GI      +  G+R +AIRTAI   
Sbjct: 416 PKMGKIVAELADVTVVTSDNPRTEDPERILQDVLTGIAPEVKPLVIGDRAQAIRTAILEA 475

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              D +++AGKGHE   I+   EK    D +  R  L 
Sbjct: 476 KPGDGVLIAGKGHEDYQILGT-EKIHFDDREQARLALN 512


>gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
 gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
          Length = 492

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 150/493 (30%), Positives = 233/493 (47%), Gaps = 20/493 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L + L    +    + ++ +  DSR +  G +FVAI G++ DG  FI +AI +GA A
Sbjct: 1   MRDLKSILKYIEIDAPSQLVSHLRLDSRDVNPGDVFVAIKGHELDGGQFIAKAIEKGAVA 60

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           ++      L +F     S   + +V    K L+  ASR Y K   N+  + VTGT+GKS+
Sbjct: 61  VIADR---LCEFDVAFES---LYLVSELDKKLAELASRFYDKPSHNLDLIGVTGTNGKST 114

Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             + +  + Q     S  IG               TTPS + L   LS L       V++
Sbjct: 115 TTAMIAHLAQYCNTQSAIIGTLGFGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL QHR+   +  A  FTNL RDH+DYH    +Y +AK+ LF +  P+    ++ 
Sbjct: 175 EVSSHGLVQHRVAQCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFDPQ--LVVLN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            DD  + + +++                   ++++   V          +S    D    
Sbjct: 233 QDDNQAGQWLEKYDFNNLICYGRKNLAPKNAQYVYFSDVDYSDEGISAQLSTSWGDIKVK 292

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF +YN   A    + +G     ++   ++L  V GR +      +   +  DYA
Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLEQLIAGCQQLQPVAGRMQAFSVAGKPTCVV-DYA 351

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT  +L + L+ ++    G +  VFGCGGDRD+GKR +M + A   A+  I+T DNPRSE
Sbjct: 352 HTPEALALALQALQKHVPGGVSCVFGCGGDRDKGKRVLMAQAAEKNANKVIITSDNPRSE 411

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I AE+  G+        + +R  AI  AI      +V+++AGKGHE   I+ + E+
Sbjct: 412 DPNVIIAEVASGLAAPQSAHLEADRASAISYAINNAASNEVVLIAGKGHEDYQIIGD-ER 470

Query: 481 KMSVDCDIIREIL 493
               D   ++E L
Sbjct: 471 IDFCDRQFVQEQL 483


>gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
          Length = 479

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 244/486 (50%), Gaps = 21/486 (4%)

Query: 11  FPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+  L    +Q  E +I   +  DSR I  G IFVA+ G   DGH FI  AI +GA+
Sbjct: 1   MEKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAK 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+VS     Q            +++ N RK L + AS  YG  P+  + + G +G +  
Sbjct: 61  LIIVSKEVPCQ-------KGIGYVLIKNLRKHLGILASNFYG-WPQKNIKILGVTGTNGK 112

Query: 130 ASFVQQICQRSGL-SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +    + Q  G     + G     I     +   TTP  + L + +     QG+ ++ +
Sbjct: 113 TTTTYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYDQGLEYIIM 172

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L+  R++ ++     FTNL  DH+DYH+T + YF AK +LF +L  K +  ++ 
Sbjct: 173 EVSSHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-AIKVLN 231

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD Y + + +  H      +S G +   +  K +     K++V +S+ GK  +    + 
Sbjct: 232 VDDEYGRRLQEEFHG-----ISYGTKQAEVQGKILGFEGGKEKVELSLFGKKKECKIQIL 286

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F +YN L +  L   +G+    +   +E L   PGRFE V    +   + +DYAHT +
Sbjct: 287 GGFNLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDC-GQDYMVVIDYAHTGD 345

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE IL+ I+ I + +II +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+PE 
Sbjct: 346 ALENILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPES 405

Query: 428 IRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  E+  G      I    R EAI   I    K D++++AGKGHET  I+   +K    D
Sbjct: 406 ILEEVKGGFTKENHICVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQILGR-KKYHFDD 464

Query: 486 CDIIRE 491
            +  R 
Sbjct: 465 REFARR 470


>gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
          Length = 848

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 149/474 (31%), Positives = 228/474 (48%), Gaps = 19/474 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR I+AG  FVA  G   DG  +I  A+  GA  +   +      F      + P 
Sbjct: 60  LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGG---FEWRPEWDVPN 116

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + R+   + A+  YG      +I+ VTGT+GK+SV  ++ Q               
Sbjct: 117 QAIPDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIV 176

Query: 151 STISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T+ +    +      TTP P+ L   L      G   V++E SSHGLDQ+R++G     
Sbjct: 177 GTVGNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRT 236

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-- 264
             FTNL RDH+DYH++ + Y   K RLF     +   A+I  DDA+ +++      +   
Sbjct: 237 AVFTNLTRDHLDYHRSMEEYGAVKARLFHWQGLQN--AVINTDDAFGQQLCAELKRSESS 294

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             V S G+ +   I + +  A      + ++           L G F   N   A G   
Sbjct: 295 LHVYSYGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGALC 354

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TS 381
           A G D    L  L  +    GR + +    +   + VDYAHT ++LE  L  +R I   +
Sbjct: 355 AGGYDFQAALNALSHIRPATGRMDCIIGEGK-PLVVVDYAHTPDALEKALATLREIKQPA 413

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FI 440
           G +  VFGCGGDRD+GKRP+MG++A  LAD  +VT DNPR+EDP+ I A+I+  +P   +
Sbjct: 414 GCLWCVFGCGGDRDRGKRPLMGEVAARLADKVVVTSDNPRTEDPQAIIADILPAVPHPAL 473

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            + +R  AI  AI      D++++AGKGHET   + +G +    D ++  + L 
Sbjct: 474 VEADRKAAIEQAIAQAAPNDIILIAGKGHETYQEI-HGVRTHFSDFEVAEQALA 526


>gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 494

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 244/503 (48%), Gaps = 33/503 (6%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +L + L+   ++   + +I  + +DSR ++ G +F+ + G+  DGH F  QA  +GA
Sbjct: 2   NLKQLSSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHEFAAQAADKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            A+VV     +         + P ++V ++R  ++  A+  Y +      ++ VTGT+GK
Sbjct: 62  AALVVERKLEV---------DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ I    GL +  IG         +     TTP  + L + L+ +++ G    
Sbjct: 113 TTTTYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECC 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----- 240
            +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK   F  L        
Sbjct: 173 VMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDE 232

Query: 241 --ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG 297
                A++ ADD  S    K+       V++ G  +   +    +          +    
Sbjct: 233 SARKYAVLNADDDASAYFAKQTA---AEVITYGLGEDADVRASNISITAQGTSFHVDTFR 289

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    + G+F VYNA+ A    +  G+    +   LE +  V GR E V    +   
Sbjct: 290 GSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVVD-EGQPYA 348

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE +L+ +     GR+I VFGCGGDRD+ KRPIMGKIA   +D+ +VT 
Sbjct: 349 VIVDYAHTPDGLENVLRTVNEFAEGRVITVFGCGGDRDRTKRPIMGKIAAKYSDVVLVTS 408

Query: 418 DNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DNPR+EDPE I  +I  G+         +    +R +AI  AIEM +  DV+++AGKGHE
Sbjct: 409 DNPRTEDPELILKDIEAGLVEDGVAAESYKLIVDRRKAIEKAIEMASPGDVVLIAGKGHE 468

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  ++  GE     D  + ++ +
Sbjct: 469 TYQLIA-GEVLDFDDRIVAKDAI 490


>gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani
           ATCC 19707]
 gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
 gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
          Length = 519

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/503 (31%), Positives = 251/503 (49%), Gaps = 25/503 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+ +        +SI  +Q  ER+I+ +S DSR +  G +F A  G +  GH  I  
Sbjct: 22  LSDLLAEW-------VSIGAVQ--ERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGA 72

Query: 63  AIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           A+ QGA AIV      +     T     N P++ + +    + + A R Y +    +  L
Sbjct: 73  AVDQGAAAIVYDPVIPVSPAIQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVL 132

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV+ F+ Q   R G+    +G     +    Q + LTTP  + + + L+ +
Sbjct: 133 GVTGTNGKTSVSHFLAQALHRQGIPCGLVGTLGKGLVGTLQPSPLTTPDAVTVQEQLAAM 192

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++  + +  +E SSH L+Q R++G+      FTNL R+H+DYH     Y  AK RLF + 
Sbjct: 193 AAARIRYTVLEVSSHALEQGRVNGVVFNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQ- 251

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
            P+   A+I  DD   +  +    +     +S G       +   ++        +T+  
Sbjct: 252 -PELRHAVINIDDVAGRAFLANLPSEVA-AISYGITNPQANLWASELHCDRYGIAMTVQS 309

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F  YN L A G  + +G+     L+ L ++  V GR E  G     
Sbjct: 310 AWGEGQLTCSLLGRFNAYNLLAALGGLLVVGMPFTEALQRLSQVRAVAGRMEAFGEKEGE 369

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE +L +++      GR+  VFGCGGDRD+GKRP+MG  A  LAD  
Sbjct: 370 PLLVVDYAHTPDALEQVLCSLQMHLGPGGRLWCVFGCGGDRDRGKRPLMGAAAERLADFV 429

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+TDDNPR EDP +I  +I+ GI          +R EAI  A ++   +D++++AGKGHE
Sbjct: 430 ILTDDNPRDEDPIQIIIDILSGIHNPDRVYQFRSRSEAIIRATQLAGPEDIVLIAGKGHE 489

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +   E++   D + ++E L
Sbjct: 490 EYQQIGA-EQRPFSDREQVQEAL 511


>gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
 gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia rickettsii]
 gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 479

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 253/480 (52%), Gaps = 23/480 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  ++     
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q     G  +
Sbjct: 68  -------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     P    L      K    L+  G+ ++  EASSHGLDQ RL
Sbjct: 121 ASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D    + V   
Sbjct: 181 REIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            HN   + ++VG +G     +  C++   Q +  +   ++++F  P+ G FQ  N L+A 
Sbjct: 241 LHNHNVKFITVGTKGDLEITRLNCSL-KGQNINFTFNNREYNFNTPIIGSFQASNLLIAV 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                IG     V++ L ++  V GR E +        I+VDYAHT ++LE  L  ++ I
Sbjct: 300 LSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKALTELKNI 355

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRAEII GI 
Sbjct: 356 KLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISGIE 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
              + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D +++R+ + +
Sbjct: 416 KADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEVVRKCIKV 474


>gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
 gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
          Length = 485

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 155/471 (32%), Positives = 239/471 (50%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            RK + +  DSR ++  +IFVA+ G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  NRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-F 145
                 +++D  R  L   AS  Y + P+  L + G +G +   S    I +  G +   
Sbjct: 73  --KVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPIT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     I     +   TTP  + L K       + + +V +E SSH L+  R+D +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L    +      DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVF-NIDDKYGKRLYDEFIEDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  +GK     F L G+F +YN L A  + I 
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKFKGKVEKVKFALLGDFNLYNTLGAVAIAIK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +G  
Sbjct: 305 MGISWEDILKRVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNIRNGNR 363

Query: 385 IV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           I+ +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I A++  G      + 
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFADVKIGFTKNDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 544

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 155/495 (31%), Positives = 230/495 (46%), Gaps = 43/495 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ ++ DSR +Q G++F  + G K DGH F   A+ +GA A+VV     +        
Sbjct: 56  QKISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALVVERYVDV-------- 107

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSF 145
            +   + V +TRK ++  A   YG     +L V  T           V+ I    G    
Sbjct: 108 -DALQIRVPSTRKSMAQAARVFYGSPSSRMLMVGVTGTNGKTTTTHLVEAILVAQGRRVG 166

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     +   A   + TTP  + L   L+ ++ +G   V +E SSH LDQ R+ G+  
Sbjct: 167 LIGTNGNRLGDKAWPAQHTTPESLDLQALLAEMADEGADAVVMEVSSHALDQLRVLGVDF 226

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---------------------- 242
               FTNL +DH+DYH+T + Y +AK  LF  L  +                        
Sbjct: 227 DLALFTNLTQDHLDYHETLERYRDAKGMLFRALTGEMKGGKGASSPGSAPEATTLQGVPK 286

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFD 301
            AII ADD  +   +  +      V++ G +   +   +      +     +   G +  
Sbjct: 287 RAIINADDPNAGFFIAASAAP---VITYGIEADAMIKGRDWAVTPHGLTCDVLYPGGEVR 343

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G F + NAL A     A+GID   +   L  +  V GRFE +    +   + VD
Sbjct: 344 LNLQLTGRFNLSNALAAFAAGWAVGIDPEAIAAALGAVTGVAGRFERIDL-GQPFSVIVD 402

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + LE +L   R +  GR+I VFGCGGDRD+ KRP MG +   L+D+AIVT DNPR
Sbjct: 403 YAHTPDGLENVLVTARALARGRVITVFGCGGDRDRTKRPKMGAVVARLSDVAIVTSDNPR 462

Query: 422 SEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           +EDP +I  +I+ G+        + +R  AI  A+ +    D++++AGKGHE+  IV   
Sbjct: 463 TEDPRRIIEDILPGLADAGDVHVEPDRSSAIALALSLAQPGDLVMIAGKGHESYQIVGA- 521

Query: 479 EKKMSVDCDIIREIL 493
                 D  I RE L
Sbjct: 522 RVLPFDDRQIARERL 536


>gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
 gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
          Length = 522

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 161/474 (33%), Positives = 230/474 (48%), Gaps = 22/474 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR +  G  FVAI G   DGH FI  A+  GA  +V     +L   +      
Sbjct: 62  IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCE---ALPTRARERFPG 118

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V +TR  L+  A+ L+G   +   ++ VTGT+GK++VA  V  + +  G ++  +
Sbjct: 119 VVFARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVAYLVHHLLEALGETAGLL 178

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                          LTTP P+ L + L  +  +G T  ++E SSH LDQ R+ G+    
Sbjct: 179 STIKVQAGGETTALALTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRVHGLDYEV 238

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FT L  DH+DYH T   Y  AK  LF+ L P ++ A+  ADD     ++    +   R
Sbjct: 239 AIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGP-DATALYNADDEAGPTMVA---DTEAR 294

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V+S G      I    + A  + Q+V +    +D      L G F   N   A G   A+
Sbjct: 295 VVSFGLDRDADIEATVLEARLDGQRVRLDGHERD----TQLAGRFNASNMAAAYGTGTAL 350

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-- 383
           G     V + L     VPGR E +     G  + VDYAHT ++LE +L+ +R  T  +  
Sbjct: 351 GHAPEAVADALADAPPVPGRVEPLRF-GDGTTVIVDYAHTPDALENVLRTVRDTTPAKAA 409

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  VFGCGGDRD GKRP MG+IA  LAD  IVT DNPR+E P  I  +I  G+       
Sbjct: 410 LWCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDICDGVERPESMR 469

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +R EAI+ A +     DV+V+AGKGHET   +   + +   D ++ R   G
Sbjct: 470 WIVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGT-DTRPFDDREVARRYFG 522


>gi|192292419|ref|YP_001993024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286168|gb|ACF02549.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris TIE-1]
          Length = 485

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 203/488 (41%), Positives = 274/488 (56%), Gaps = 20/488 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   +        ++               DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDLFSAEADIAAPAAALAIGGLA--------VDSRAVKPGDLFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    A+   +     +         P + + N R  L+  A+R Y + PE I AV
Sbjct: 53  A-------AAVATGAVAVAGEHRPEGDLAVPFVQLSNARLALAQAAARFYPRQPEVIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G +S  IG    ++ + +    LTTP PI L ++L  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAR 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T   Y NAK+RLF  L+ 
Sbjct: 166 EGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQ 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVE 296
               A+I AD   S +V++ A   G R++++G  G       L         QQ+T+   
Sbjct: 226 DGGAAVISADHDCSAQVIEAAGARGLRLITIGRNGDPGAGIKLIDATVEGFAQQLTVEHA 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK      PL GEFQ+ NALVAAGL I  G D+A     LE L   PGR + VG    G 
Sbjct: 286 GKRHRIKLPLVGEFQIENALVAAGLVIGTGGDAAASFAALEHLEGAPGRLDLVGAR-NGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD+ I+T
Sbjct: 345 PVFVDYAHKPDALAKTLQALRPYAKRKLVVVFGAGGDRDSGKRPLMGAIAAENADVVIIT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IR+ I+   PG  E G+R EAIRTAI  L   D LV+AGKGHET  IV 
Sbjct: 405 DDNPRSEDPATIRSAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464

Query: 477 NGEKKMSV 484
           +     S 
Sbjct: 465 DRVLHFSD 472


>gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
 gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
          Length = 485

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 158/471 (33%), Positives = 243/471 (51%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK N +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             N   ++++  R  L   AS  Y + P+  L + G +G +   S    I +  G     
Sbjct: 73  --NVSYVLIEEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     +     D   TTP  + L K       + + +V +E SSH L+  R+D I  
Sbjct: 130 RIGTIEYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGRVDVIDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L  K   ++I  DD Y K +        
Sbjct: 190 DCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKND-SVINIDDNYGKRLYDEFIVDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  + +     F L G+F +YN L A G+ + 
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +  R
Sbjct: 305 IGISMEEILKRVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNIKNVNR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           II +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  G      +I
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGFIKSDDYI 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ A+ M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKAAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
          Length = 507

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 147/503 (29%), Positives = 232/503 (46%), Gaps = 23/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+ +   E  +   +   +     I+ V   S ++  G +F  + G K DGH F 
Sbjct: 1   MYLNDLLAR-LHEDPSSPKLLSPRGDNPWIDRVVHHSGNVAPGSLFACVSGGKADGHRFA 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ +GA A+ V  A  L      +            R+F+   A+ LYG+  + +  +
Sbjct: 60  ASALDRGAVALCVERALDLPVPQVVVPDV---------RRFMGRLAAVLYGEPAQRLTHV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GKS+    ++ + Q +G+ +  +G           +   TTP    +   L+ +
Sbjct: 111 GITGTNGKSTTTYMLRSVLQSAGVKTGLLGTIVYHDGDKELEADRTTPENTDIQSFLARM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G     +E SSHGL+Q R++G +   G FTNL  +H+DYH T++AYF AK  LFEE 
Sbjct: 171 VSNGCGACVMETSSHGLEQGRIEGCRFDRGGFTNLSPEHLDYHGTEEAYFQAKKLLFEEY 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +          DDAY + +++              +   +             + +++  
Sbjct: 231 MKPSWKGASNRDDAYGRRLLEAYPENLVGYTREEPRPGDLGATLKSFDLTGMCLDLTLPD 290

Query: 298 KDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +   PL G + V NAL  A L   + ID   +   L  +  VPGR E       G
Sbjct: 291 GRVLPEVHLPLIGTYNVENALACAALARTLDIDGETIRRGLASMPQVPGRLERYSLPG-G 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +DYAHT + LE +L  +R +  G++  VFG GG+R    R  +G+ A  LAD  +V
Sbjct: 350 VTCVIDYAHTPDGLEKVLSTLRHVCRGQLWSVFGHGGERTTSHRKALGEHAGRLADRVVV 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           T DNPRSEDP  I  +I+ GI G      +  + +R EAIR A++     DV++V+GKG 
Sbjct: 410 TMDNPRSEDPGAIAEQIVGGIQGSGAATPWEVRLDRGEAIRFALDGAQPGDVVLVSGKGP 469

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           E  +I+         D  ++ E 
Sbjct: 470 ER-NIIFADRLVPFEDRAVVLEW 491


>gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
 gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
          Length = 499

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/508 (29%), Positives = 237/508 (46%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+                    +  N+++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWL-----------HYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDF----SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
            +A+  GA A++V +  + Q      S        I     +R+  ++ A R    H   
Sbjct: 51  EKALDLGAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSA 110

Query: 116 ----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYL 170
                ++ +TGT+GK+S +  + Q+    G  +  +G     +     D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHN 287
             LF          ++  DDA     +    +   ++      G+Q    + K       
Sbjct: 231 QSLFR--FNTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQ 288

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+     + +   PL G F + N L A       G D   + E ++ L  V GR E
Sbjct: 289 GVSATLVWPEDETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRME 348

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              T +    + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MGK A 
Sbjct: 349 RFTT-ANNITLVVDYAHTPDAIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAE 407

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++
Sbjct: 408 QYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILL 467

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AGKGHET      G +    +  + R++
Sbjct: 468 AGKGHETYQE-AAGVRHDYDERALARQL 494


>gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 492

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 266/504 (52%), Gaps = 27/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+  DF                + I+ ++ +S+ ++   +F A+ G K DGH FI
Sbjct: 1   MILKELLRSDFN---------VKGDINKNIDYITYNSKDVKEASLFFAVSGQKADGHFFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI +GA+A+V  +      F  +  ++   + V+++R  LS  +S+ YG   E +  +
Sbjct: 52  EEAIKKGAKAVVYETG----HFMPSEYADVTWIGVNDSRDALSWISSKFYGNPSERLKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  +++I +R    +  IG     I +  +    TTP      + L  +
Sbjct: 108 GITGTNGKTTTSYLIREILKRYDKKTGVIGTIKYLIDNEEKVAVHTTPEAPEFQELLHEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +V  E SSH L   R+D  K     FTNL RDH+D+H+  + YFNAK RLF EL
Sbjct: 168 LVKGVEYVITEVSSHALALKRVDYTKFDIAVFTNLSRDHLDFHKDMEDYFNAKKRLFTEL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-E 296
           L  E  A+I  DD Y + + ++  N      S+      I++K       + ++ + + +
Sbjct: 228 LKNEGVAVINFDDVYGRRLAEQL-NTKKITYSIENPQADIYVKNYRLNFKETEINLHIKK 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K+      L G   +YN + A  + +A+ I   ++   +   H   GRFE V    +  
Sbjct: 287 EKELVVKTHLLGIPNIYNVISAVSVAVALNIPFDIIESAISDAHSPDGRFERVD-EGQDF 345

Query: 357 RIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            ++VDYAH+ ++LE +L ++R +      +G+I+ VFGCGG+RD+GKRP MGKIA +L+D
Sbjct: 346 LVFVDYAHSPDALERLLISVRKLKEEISKNGKIVTVFGCGGNRDRGKRPQMGKIATELSD 405

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+T DNPR E+P +I  EI  GI    +I   +R  ++    ++  K D+L+VAGKGH
Sbjct: 406 YVILTSDNPRWEEPREIIKEIEEGILKDNYIVVPDRTMSLYIGTKICKKGDILIVAGKGH 465

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G++    D +I+ + L
Sbjct: 466 EDYQEIK-GKRYPFSDREILVKAL 488


>gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 492

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 157/499 (31%), Positives = 246/499 (49%), Gaps = 31/499 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           + L DL+     +LINQ            +  V++DSR +  G +FVAI G   DGH + 
Sbjct: 7   LNLTDLVKT--IQLINQ-----PNLEGIVVTHVTTDSREVVPGTLFVAIKGYTVDGHEYA 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+ +GA A+V   +  L         + P L+V ++ + + L AS  Y    E   + 
Sbjct: 60  AQAVERGAVAVVSERSLDL---------SVPNLIVRDSSRSIGLLASAFYAYPSEQMRLF 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++  + ++ +    G S+  IG     I+     ++ TTP    L + L+ +
Sbjct: 111 GITGTNGKTTTTTILRDVLDVLGHSTGLIGTVEVRINDKIVPSKNTTPQSSELQQLLAQM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GVT V +E SSHGL+  R+ G       FTNL  DH+D+H T + Y  AK  LF +L
Sbjct: 171 RDEGVTDVMMEVSSHGLELGRVIGTDFDIVGFTNLTHDHLDFHGTFENYARAKGLLFAQL 230

Query: 238 ---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293
                +   A++ ADDA +          G +V++ G      +    +    ++   T+
Sbjct: 231 GQMASRGKVAVLNADDAQTPL---YETMTGAKVITYGIDAQADLMATDIEQTLSQTSFTL 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + +G          G F VYN L+A G  +A G     + + LE +H   GR + +    
Sbjct: 288 NYQGAKLPVTVQFIGRFNVYNLLLATGCLLAAGYSLERIAKALEMIHPAKGRMQRLDVP- 346

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  +Y DYAHT + +E  LK++  +   +II + G GG+RD  KRP MG++A   A   
Sbjct: 347 -GYNVYADYAHTPDGIEQCLKSLVGVPKEKIIFLIGTGGNRDVTKRPAMGEMASTYAGTV 405

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T D+PR E  E I   I  G+    F+E G+R EA+R A  +    +++V+AGKGHE 
Sbjct: 406 IITTDDPRFEAYESITKGIAAGMTHDNFVEIGDREEAVRYAARLAKPDNIIVLAGKGHEK 465

Query: 472 VHIVTNGEKKMSVDCDIIR 490
             I+ N EK    +  I+R
Sbjct: 466 YQIIGN-EKLPLDEEAIVR 483


>gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
 gi|156865018|gb|EDO58449.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
          Length = 499

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 154/506 (30%), Positives = 249/506 (49%), Gaps = 37/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK ++L+      +I           + +I E+ +DSR +    +F  IVG   DGH ++
Sbjct: 1   MKARELLKGLQYSVICG-------DEDVEIKEIYNDSRKVGEQGLFFCIVGANFDGHAYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
              I +GA  +VV                  I+ VD+TR  + + +S  YG     +  +
Sbjct: 54  KNVIDKGAVCLVVQKDVE-------PVPGVLIVKVDSTRYAMGIVSSNFYGNPSSKLTVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++++   +G  +  IG    I  +       TTP  + + K L  +
Sbjct: 107 GITGTKGKTTTTYMIREMLMSAGHKTGLIGTIEIIDGNNVTAANNTTPESMIVHKKLKDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G+  V +E SS GL   R+ G+    G F+NL RDHI    H+T + Y   K +LF 
Sbjct: 167 VDNGLDSVVMEVSSQGLMLDRVAGVDFDYGIFSNLSRDHIGPNEHKTFEEYAMWKSKLFT 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VT 292
                    I  ADD +   + + A    C++++ G  G + +      ++NK     + 
Sbjct: 227 ----MCKIGIFNADDPHVDTMTEHAT---CKIVTYGINGDYDYKANNHNLYNKDGHLGIG 279

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             + GK D D L  LPG F +YN+L A  +   +G+    + E L+ +  V GR E +  
Sbjct: 280 YHLSGKLDGDVLVNLPGNFSIYNSLAAIAVADLMGVPFDKIQEILKTIK-VKGRVELIPI 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + +   I +DYAH + SL  IL+ +R     R++ +FGCGG+R + +R  MG+++ ++AD
Sbjct: 339 SDK-FTIMIDYAHNAVSLMSILETLREYKPKRLVSLFGCGGNRSKERRYEMGEVSGNMAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + I+T DNPR E+P+ I  +I  GI      ++E  +R EAIR AI      DV+V+AGK
Sbjct: 398 LTIITSDNPRFEEPQDIINDIKTGINKTTGKYVEIIDRKEAIRYAIMNAEPGDVIVLAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    + D+IRE+L
Sbjct: 458 GHEDYQEIK-GVKHHMDERDLIREVL 482


>gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
 gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
          Length = 486

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/496 (30%), Positives = 244/496 (49%), Gaps = 24/496 (4%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ELI    +  ++   + +++ ++ DSR I  G  F A+ G + DGH +I       
Sbjct: 2   KQIQELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDA----- 56

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
                 ++A   Q     +  +   +VV +T   ++  A+  YG       ++ +TGT+G
Sbjct: 57  -AVTAGAAAVVCQRLPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  + +  + +  G     I      I +   ++  TTP  I L + ++ +   G  +
Sbjct: 116 KTTTVTLLYDLFRGLGYKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAGCEY 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH + Q R+ G+    G F+N+  DH+DYH+T   Y  AK +LF + LPKE+ A
Sbjct: 176 CFMEVSSHAIVQERIRGLHFTGGIFSNITHDHLDYHKTFAEYIRAK-KLFFDNLPKEAFA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I  DD   + ++    N    V ++  Q       K+   H    + + ++G++     
Sbjct: 235 LINIDDRNGRVMV---QNTRATVKTLSLQSMADFRCKILETHPD-GMELRIDGREVWV-- 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G F  YN L      + +G D   VL+ +  LH V GRFEFV   + G    VDYAH
Sbjct: 289 HFLGRFNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFV-RAADGTTAIVDYAH 347

Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++LE +L+ +  I     ++ V+ GCGGDRD+ KRP M +IA+  A  AI+T DNPR 
Sbjct: 348 TPDALEKVLQTVEEIRRPGQQLFVLCGCGGDRDKTKRPEMAQIAVKYATTAILTSDNPRH 407

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP+ I  +++ G+     ++   +R EAIRTA  +    D+L++AGKGHET  IV +  
Sbjct: 408 EDPDAILDDMVAGLAPGDRYLRIADRAEAIRTAAMLAKPGDILLLAGKGHETYQIVGD-V 466

Query: 480 KKMSVDCDIIREILGL 495
           K    D +       L
Sbjct: 467 KNHFDDKEEALRAFAL 482


>gi|146310295|ref|YP_001175369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter sp. 638]
 gi|167017293|sp|A4W6I8|MURE_ENT38 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145317171|gb|ABP59318.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter sp. 638]
          Length = 495

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 162/495 (32%), Positives = 243/495 (49%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R + E+  DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVQNVPARALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  +   ++ VTGT+GK++ 
Sbjct: 64  IAEAKDDATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDQLRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +   +G     +         TT S + +   LS L+ QG T  ++E
Sbjct: 124 TQLMAQWAQLLGETGAVMGTVGNGLLGKVNPTENTTGSAVDVQHVLSGLAGQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+         AII A
Sbjct: 184 VSSHGLVQHRVSALKFAASVFTNLSRDHLDYHGDMENYEAAKWLLYS--THHCGQAIINA 241

Query: 249 DDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A        ++    G+++    V    +   +  +    + +   
Sbjct: 242 DDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVDYHDSGATIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+    + ++    +L  V GR E V T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLLALATLLALDYPLSELVNTGARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R EA+  AI    + DV+++AGKGHE   IV      
Sbjct: 421 PRAIINDILAGMMDAGHARVVEGRAEAVTNAIMQAKENDVVLLAGKGHEDYQIVGAHRLD 480

Query: 482 MSVDCDIIREILGLI 496
            S D      +LG +
Sbjct: 481 YS-DRVTAARLLGAL 494


>gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 489

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 161/512 (31%), Positives = 264/512 (51%), Gaps = 41/512 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+     E+I+          +     VS DSR ++ G +F+ I G   DGH +I
Sbjct: 1   MKLYNLLKDLDYEIISGSV-------DIDARSVSYDSRKVKGGSVFICIKGANADGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA AIV+     + +       N  ++ V NT+  L+  A+  Y +  +  N++
Sbjct: 54  DEAIKSGALAIVIQEEIKIDN------ENITVIKVRNTKLALASIANVFYNEPSKEINLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSPIYLAKAL 174
            VTGT+GK++V  +++ I +     +  IG      +      Q    TTP  + L    
Sbjct: 108 GVTGTNGKTTVIHYIKDILESYKKRTAIIGTLGYEFNKEKASIQKVNPTTPESLELQGLF 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               ++G  ++ +E +S  L + R++      G FTNL +DH++ H T + Y N K++LF
Sbjct: 168 REFINKGAENIVMEVTSSALAKQRVEYCDFKVGVFTNLSQDHLEEHGTMENYKNEKIKLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    K    +I  DD  ++E++++A    C++L+ G   K   ++     +    +   
Sbjct: 228 K----KCELGVINLDDGIAEEIIQKA---SCKILTYGI-NKEADIRATEIRYRNDCIIFK 279

Query: 295 VEGKDFDFLF--------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           ++ +D  + +         +PG+  VYN L A G CI +G+D   ++  L  L  VPGR 
Sbjct: 280 IKFRDIKWRWWCITDVKVNIPGKITVYNVLAAIGACIGLGMDMGDIISCLSNLRHVPGRL 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +  N+    I VDYAHT ++LE +L   R  T G++I VFGCGGDRD+ KR +MG  A
Sbjct: 340 EMIK-NNLNKNIIVDYAHTPDALERLLMMARETTKGKLITVFGCGGDRDKSKRKVMGMAA 398

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVL 462
             L+D  I+T DNPR+EDP KI  +I  G+      + +  +R +AI   +++L   D+L
Sbjct: 399 GILSDYCIITSDNPRTEDPIKIIEDIEEGMEVINSTYEKIVDRKKAIEKGLKLLKDDDLL 458

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           ++AGKGHE   I+   +K    D +I+R+ LG
Sbjct: 459 IIAGKGHEDYQIIGK-DKIYFDDREIVRKALG 489


>gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
          Length = 485

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 158/471 (33%), Positives = 243/471 (51%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK N +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             N   ++++  R  L   AS  Y + P+  L + G +G +   S    I +  G     
Sbjct: 73  --NVSYVLIEEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     +     D   TTP  + L K       + + +V +E SSH L+  R+D I  
Sbjct: 130 RIGTIEYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGRVDVIDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L  K   ++I  DD Y K +        
Sbjct: 190 DCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKND-SVINIDDNYGKRLYDEFIVDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  + +     F L G+F +YN L A G+ + 
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +  R
Sbjct: 305 IGISMEEILKRVSNIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARNIKNVNR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           II +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  G      +I
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGFIKSDDYI 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ A+ M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKAAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii
           37]
 gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas ingrahamii 37]
          Length = 509

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 149/508 (29%), Positives = 226/508 (44%), Gaps = 35/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DLI     +               +++ ++ DSR I  G++F+A+ G + DG LFI
Sbjct: 8   MLLDDLIKPWLSDY----------DPSIRVSGLTLDSRQICRGYLFIALQGAQHDGRLFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +++  GA A++  +    +    TI+S  P+  V      LS  A R + +  +   ++
Sbjct: 58  EKSLKMGACAVLSETKNRSEHGQVTIKSGVPVFAVYKPAAILSALAYRFFFRKIKLHKVI 117

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK+++AS +       G  S Q+G     +    + +  TT   I +   L   
Sbjct: 118 AVTGTNGKTTIASLLADSFMLLGKQSAQMGTIGNGLFGQLKSSLNTTLDAISVFSELHCY 177

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q   +  +E SSHGLDQ R+  +   +  FTNL RDH+DYH + + Y  AK  LFE+ 
Sbjct: 178 QQQRAEYTIMEVSSHGLDQGRVSAVPFFSAIFTNLTRDHLDYHGSMENYHLAKKSLFEK- 236

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-------FIHLKKVCAIHNKQQ 290
                  II ADD    + +    +A    +S G+  K       ++ +  V        
Sbjct: 237 -YPLKQRIINADDPIGAQWLTDFPDA----ISYGFNAKALTDKQSYLRVTDVDYHAQGVT 291

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                         P  G+F V N        +   +    V     KL  VPGR E   
Sbjct: 292 FAFHSSWGKGVVSAPFYGDFNVSNLAAVLTQLLVENVSIEHVQTIFPKLSTVPGRMEQYY 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +     VDYAHT ++LE +L  ++    SGR+I VFGCGGDRD GKRP M  IA   
Sbjct: 352 FAEKNITFVVDYAHTPDALEKVLLALQKHKSSGRLICVFGCGGDRDTGKRPQMANIAESY 411

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   ++ DDNPR+E+ + I  +I+ G           +R +A+   +      D++++AG
Sbjct: 412 AQKVVLVDDNPRTENAQSIIEDILQGFARPDRVEVIHDRRQAVNFLLNSAQSDDIVLLAG 471

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHE   I        S      RE L 
Sbjct: 472 KGHEDYQIFGTQRVHYSD-----RECLA 494


>gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
 gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
          Length = 479

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 159/477 (33%), Positives = 250/477 (52%), Gaps = 23/477 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  ++     
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVLVITDNKKNIVIDK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q     G  +
Sbjct: 68  -------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     P    L      K    L+  G+ ++  EASSHGLDQ RL
Sbjct: 121 ASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D    + V   
Sbjct: 181 REIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ  N L+A 
Sbjct: 241 LHNHNIKFITVGTKGDL-EITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAV 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                IG     V++ L ++  V GR E +        I+VDYAHT ++LE  L  ++ I
Sbjct: 300 LSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKALTELKNI 355

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRAEII GI 
Sbjct: 356 KLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISGIE 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D +++R+ 
Sbjct: 416 KADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEVVRKC 471


>gi|313905225|ref|ZP_07838593.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
 gi|313469978|gb|EFR65312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
          Length = 496

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 144/499 (28%), Positives = 237/499 (47%), Gaps = 28/499 (5%)

Query: 8   YKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            K+   L+  L    +Q  E R+I  V  DSR    G +FV I G   DGH F P+  ++
Sbjct: 2   AKNLKTLLQGLEYEILQGDENREIESVIYDSRKAAEGCLFVCIPGAVVDGHSFAPEVASK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++V +A         + +   ++ V+N+R+ L+L ++  +    + +  +  T  K
Sbjct: 62  GAAALIVETAVD-------VPAGVTVVKVENSRRALALISAEWFDHPAKKLKTIGITGTK 114

Query: 127 SSV--ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
                +  VQ I   +G     IG   TI       +  TTP    + +  + +   G+ 
Sbjct: 115 GKTTTSYMVQSILNAAGHKCGLIGTIETITGKRVIPSPNTTPISYLVNEYFAEMVEAGLD 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
            V +E SS  L   R+ GI    G FTNLG+DHI    H+  + Y  +K +LF++     
Sbjct: 175 SVVMEVSSQALKYDRVTGIHFDFGIFTNLGQDHIGPNEHEDFEDYLASKKKLFDQC---- 230

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEG-KD 299
           +  I+  DD     +++ A  +         +        +         +    EG  +
Sbjct: 231 TIGIVNRDDKLFDRIVEGAACSKLETYGFAEEASLRATDAMMLCKPGYLGIRYQTEGLVN 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG+F VYN+L A  +C   G+    +++ L +   V GR E V  + +   + 
Sbjct: 291 IPVEVDIPGKFTVYNSLAAIAVCHHFGVTEEEIMKALPQAR-VKGRVEMVKVSDK-FTLM 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH + +LE +L  +R     R++ +FGCGG+RD+ +R  MG+++  +AD  I+T DN
Sbjct: 349 IDYAHNAMALESLLSTLREYHPARLVCLFGCGGNRDRERRFSMGEVSGKMADFTIITSDN 408

Query: 420 PRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PR E+P+ I  +I+ GI      +    +R EAI  AI      D++V+AGKGHE   I+
Sbjct: 409 PRFEEPQAIIDDIVTGIKKTDGHYTTIVDRKEAIAWAIHNGEPGDIIVLAGKGHEDYQII 468

Query: 476 TNGEKKMSVDCDI-IREIL 493
            +  KK  +D  + I EIL
Sbjct: 469 KD--KKYPMDERVLIAEIL 485


>gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida W619]
 gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619]
          Length = 496

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 155/490 (31%), Positives = 232/490 (47%), Gaps = 22/490 (4%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            +F    R+  I E++ DSR ++AG +F+A+ G K DG   I  A+         + AY 
Sbjct: 8   KLFAHASRDPLIRELTLDSRAVRAGDLFLAVPGAKVDGRDHISDAL----ARGAAAVAYE 63

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            Q       ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q 
Sbjct: 64  QQGTHVLPITDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQA 123

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G     IG   T      Q  RLTTP PI +   L  L   G   V++E SSH L+
Sbjct: 124 LDALGQRCGLIGTLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSHALE 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DD + + 
Sbjct: 184 QGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPGLRCQVVNLDDGFGRR 241

Query: 256 VMKRAHNAG------CRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +               R+LS   +      + ++     +  +  I     +      L 
Sbjct: 242 LAADFARRPSVDHIETRLLSYSLENSDASLYCREAKFDDDGVRAIIVTAQGERTLRSQLL 301

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A    +A+      +L+   +L    GR + +G       + VDYAHT +
Sbjct: 302 GRFNLSNMLAAVATLMALDYSLDEILKVTPQLQGPVGRMQRLG-GGEKPLVVVDYAHTPD 360

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+EDP+ 
Sbjct: 361 ALEKVLQALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPQA 420

Query: 428 IRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I  G     +      R EAI   I      DV+V+AGKGHE    + NG++    
Sbjct: 421 IFNDIRPGFARPADVEFIAGRGEAIAHLIASAAASDVIVLAGKGHEDYQEI-NGQRHDFS 479

Query: 485 DCDIIREILG 494
           D     + L 
Sbjct: 480 DLVEAEKALA 489


>gi|170748780|ref|YP_001755040.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655302|gb|ACB24357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 485

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 208/481 (43%), Positives = 284/481 (59%), Gaps = 11/481 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L +          +  ++++++DSR +  G +FVA+ G K DG  F  QA          
Sbjct: 5   LADLFPEAAGPAADLTVSDLTADSRQVATGTVFVAVPGTKADGRRFAAQA-----AQRGA 59

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++        A +      + V + R+ L+L A+RL G  PE ++AVTGT+GKSSVA FV
Sbjct: 60  AAVAGEGTRPADLPDAVAWIPVADARRALALAAARLAGPQPETVVAVTGTAGKSSVADFV 119

Query: 134 QQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +QI  R G  +  +G    +    AQ   LTTP P+ L + L+ L+++GVT +++EASSH
Sbjct: 120 RQILARLGRDAASLGTVGIVTGRGAQYGSLTTPDPVTLHRTLARLAAEGVTDLAMEASSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G++Q RLDG++L A  FTNLGRDH+DYH + + Y  AK+RLF +LLP   PAI+ AD AY
Sbjct: 180 GIEQRRLDGVRLDAAGFTNLGRDHLDYHASIEEYLAAKLRLFTDLLPPGRPAIVNADGAY 239

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           ++ V+  A  AG  V +VG  G+ + ++ V      Q   +   G+  D   PL GEFQV
Sbjct: 240 AERVIAAAEAAGRPVRTVGRGGRDLRVEAVRTEGFAQAARVLFAGRARDLRLPLVGEFQV 299

Query: 313 YNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            NALVAAGL +A      D   V   L+ L  VPGR E +G  +RGG   VDYAH   +L
Sbjct: 300 ENALVAAGLALATPAGAADPDGVFAALDHLTGVPGRMERIG-EARGGLCLVDYAHKPEAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L  +R   +GR++ VFGCGGDRD+GKRP+MG IA  LAD+ IVTDDNPR+ED   IR
Sbjct: 359 ESVLTALRPFATGRLVAVFGCGGDRDRGKRPLMGAIAQRLADVVIVTDDNPRTEDAAAIR 418

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             I+   PG  E G+R EAI +A+  L   DVLVVAGKGHET  IV +       D  ++
Sbjct: 419 RAILDAAPGAEEIGDRSEAIHSAVSRLGPGDVLVVAGKGHETGQIVGD-RTLPFSDHAVL 477

Query: 490 R 490
           R
Sbjct: 478 R 478


>gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 490

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 155/476 (32%), Positives = 242/476 (50%), Gaps = 26/476 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S  S+ ++   IF A  G K DGH FI +AI +GA  +V             +  N
Sbjct: 25  IKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKK------PVLLHKN 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++V N+   L   +S  Y    +   ++ +TGT+GK+SVA+ +  +  + G  S  I
Sbjct: 79  ITYVIVKNSMDALGTISSNFYDHPTKKIKLVGITGTNGKTSVATILHHLFYKMGEKSILI 138

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 I S     + TTPS + + K L+    +G  +  +E SSHG+ Q R+ G+    
Sbjct: 139 STMGIKILSQEFPTKHTTPSIVDINKYLNLSIQKGCKYAFMEVSSHGIHQKRIAGLLFTG 198

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+  DH+DYH++ + Y + K   FE  LPK + A+I +DD  S E++K   N   +
Sbjct: 199 GVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSHEIIK---NVLAK 255

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +   G + K  +  K+   +      + ++G  F     L GEF V N L      I +G
Sbjct: 256 IYFYGLKKKTDYRIKIMKKNIHGN-QLLIDGHKF--FTFLIGEFNVSNLLACYATAILLG 312

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                +L+ +  +  + GRFE   + S G RI VDYAH  + ++ +LK I+ I     R+
Sbjct: 313 KKKEEILQKINTIPPIKGRFEQFISYS-GIRIIVDYAHNPDGIKNLLKAIQEIKKQEERL 371

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-------HGIP 437
           I + GCGG+RD+ KR +MGKI  +  D++I T DNPR EDPEKI  ++            
Sbjct: 372 ICIIGCGGNRDKEKRSLMGKIVYETCDLSIFTSDNPREEDPEKILIDMKNFRSYLNKDKE 431

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +   NR EAIRTAI+M  ++D++V+AGKGHE    +  G++    D +I + + 
Sbjct: 432 DILTIVNRKEAIRTAIQMAREKDIIVIAGKGHENYQEI-QGKRYPFDDMEIAKTLF 486


>gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila psittaci RD1]
 gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila psittaci 6BC]
          Length = 483

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 146/502 (29%), Positives = 242/502 (48%), Gaps = 32/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++S         ++  ++ DSR++  G IF+A  G   DG+ F 
Sbjct: 1   MNLKELLHNTKAKIYGKISS-------VEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI  GA A+  S           I S+ P L  D         A++ YG   + +  +
Sbjct: 54  HLAIENGAIAVASSIYNPFLPVVQIISSDLPQLEAD--------LAAKYYGHPSQKLCVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  ++ +       +  IG    I  +    +  TTP    L K L+ +
Sbjct: 106 GITGTNGKTTVSHLIKFLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               ++   +E SS GL  +RL  +    G  TN+  DH+D+H + + Y  AK++LF  +
Sbjct: 166 VKSNLSAAVMEVSSIGLAVNRLANVHFDVGVLTNITLDHLDFHSSFEEYKQAKLKLFS-M 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           LP    A++  D  Y+ + ++         ++ G  Q        +          +  +
Sbjct: 225 LPSSGLAVVNNDLHYAAQFIEATQAQP---ITYGIEQHADYRASNLRFSPFGTDFDLLYK 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+ F    PL G+  +YN L A  +    +G D   ++  +  +    GR E V +    
Sbjct: 282 GETFACSSPLIGQHNIYNVLAAISVAHQRLGCDLQQLISAVANVETPRGRLEPVFSGPCP 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             IY+DYAHT ++L+ + K ++ +    GR+IVVFGCGGDRDQ KR IM ++       A
Sbjct: 342 --IYIDYAHTPDALDNVCKTLQALLPQDGRLIVVFGCGGDRDQSKRKIMAQVVEKY-GFA 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +VT DNPR EDPE I  EI  G     F  + +R +AI  A+ + + +D+++VAGKGHET
Sbjct: 399 VVTTDNPRGEDPEMIINEICSGFFKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHET 458

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I  +       D +I+ E+L
Sbjct: 459 YQIFKHQTI-AFDDKEIVLEVL 479


>gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
 gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
          Length = 498

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 146/480 (30%), Positives = 231/480 (48%), Gaps = 24/480 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +++++DSR    G +F A  G + DG  F+  A+  GA A++        D         
Sbjct: 18  DDITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDG----DGFCAPALAV 73

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   V   R+     A  L+G+  +++    VTGT+GK++V+  + +     G     +G
Sbjct: 74  PGFGVRGLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVG 133

Query: 149 PTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP  + L +  +   +QG    ++E SS GLDQ R++G +    
Sbjct: 134 TLGCGFPDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY  AK RLFE   P+ S  +I  DD +   + +R    G  V
Sbjct: 194 IFTNLSRDHLDYHGTMEAYAAAKARLFER--PELSACVINIDDPWGLALARRLVVEGRAV 251

Query: 268 LSVGYQGKFI---------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           ++                    ++ A     + T+  EG++ +    +   F V N +  
Sbjct: 252 IACTLYAANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAV 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG  +A GI    +   L +L    GR + VG       + +DYAH+ ++L  +L+ +R 
Sbjct: 312 AGALLARGIAFDELPPVLGRLAPPQGRMQLVG-GVCEPLVVIDYAHSPDALAKVLEALRG 370

Query: 379 ITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                 GR++ VFGCGGDRD GKRP+MG+IA  +AD  ++T DNPRSEDP++I   I  G
Sbjct: 371 TVHSRRGRLVCVFGCGGDRDPGKRPMMGEIASAIADRVVITSDNPRSEDPQRIVEAIAAG 430

Query: 436 IPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                E   +R +AI  A+      DV+++AGKGHE    +  G++    D +  +  L 
Sbjct: 431 AGAAAECVVDRAQAITRAVGEARADDVVLIAGKGHEPYQEIL-GQRLPFSDLEQAKRALA 489


>gi|302036127|ref|YP_003796449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
 gi|300604191|emb|CBK40523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
          Length = 502

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 156/515 (30%), Positives = 242/515 (46%), Gaps = 36/515 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L +LI      L  +L +      +R  I +++ DSR +  G +FVA+ G + DGH F
Sbjct: 1   MTLDELIGP----LHGRLGVLERNGDQRVTIADLTDDSRKVGPGSLFVAVQGERVDGHQF 56

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           + + +         + A ++    +      P + V ++R  L +  SR YG       +
Sbjct: 57  LDRVV--------AAGAAAVVVQRSGDVGAIPCVRVQDSRAALGILGSRFYGDPSSSLRM 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    V+ + + +      IG  +  +   +     TTP  + L K  + 
Sbjct: 109 VGVTGTNGKTTTTYVVKTMLEAARRQVGLIGTVAYLVGKESIPASHTTPGALELQKLFAR 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +    +  V +E SSH L   R  G +     FTNL +DH+D+H   + YF AK++LF E
Sbjct: 169 MREARLDTVVMEVSSHALALDRTAGSEFDVAVFTNLTQDHLDFHLDMERYFQAKLKLFAE 228

Query: 237 L-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ 290
           L     +     AII ADD +   +          V + G +Q   I+   V        
Sbjct: 229 LGRAGAVKPRKRAIINADDPWGARIRS---ACTVPVWTYGLHQQADIYADGVRLSPAGTS 285

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+            L GE  V N L A G+ +  G+    V   +E +  VPGRFE V 
Sbjct: 286 FTLRSPAGTCPIKSRLVGEHNVSNLLAAIGVVLHEGLTLDQVRSAVETVTNVPGRFELV- 344

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT ++L  +L   + + +GRII VFGCGGDRD+ KRP MG+ A+  +
Sbjct: 345 EAGQDFSVVVDYAHTEDALVRLLTAAQALRTGRIITVFGCGGDRDRTKRPKMGRAAVKYS 404

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEMLNKQDV 461
           D+ I+T DNPR+EDP  I  E+  G+           +    +R EAI  AI      D+
Sbjct: 405 DVVILTSDNPRTEDPAAILREVEVGVKEALAERGHVRYRMVADRREAIEAAIREAKPGDM 464

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +++AGKGHE   IV    K    D ++ R+ +G +
Sbjct: 465 VLIAGKGHEDYQIVGT-TKHHFDDREVARDTIGAL 498


>gi|39936597|ref|NP_948873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650453|emb|CAE28976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 485

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 203/488 (41%), Positives = 278/488 (56%), Gaps = 20/488 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+D+         +  +       +  I  ++ DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDIF--------SAEADIAAPAADLTIGGLAVDSRAVKPGDLFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    A+   +     +       + P + + N R  L+  A+R Y + PE I AV
Sbjct: 53  A-------AAVAAGAVAVAGEHRPEGDLSVPFVQLSNARLALAQAAARFYPRQPEVIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G ++  IG    ++ + +    LTTP PI L ++L  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHAAASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAR 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T   Y NAK+RLF  L+ 
Sbjct: 166 EGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQ 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVE 296
               A+I AD   S +V++ A   G R++++G  G       L         QQ+T+   
Sbjct: 226 DGGAAVISADHDCSAQVIEAAGARGLRLITIGRNGDPGAGIKLIDAAVEGFAQQLTVEHA 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK      PL GEFQ+ NALVAAGL I  G D+A     LE L   PGR + VG    G 
Sbjct: 286 GKRHRIKLPLVGEFQIENALVAAGLVIGTGGDAAASFAALEHLEGAPGRLDLVGAR-NGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD+ I+T
Sbjct: 345 PVFVDYAHKPDALAKTLQALRPYAKRKLVVVFGAGGDRDSGKRPLMGAIAAENADVVIIT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRA I+   PG  E G+R EAIRTAI  L   D LV+AGKGHET  IV 
Sbjct: 405 DDNPRSEDPATIRAAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464

Query: 477 NGEKKMSV 484
           +     S 
Sbjct: 465 DRVLHFSD 472


>gi|92116830|ref|YP_576559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
 gi|91799724|gb|ABE62099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
          Length = 485

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 206/495 (41%), Positives = 282/495 (56%), Gaps = 23/495 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D        +    +  E  +  ++ DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLRELFGDD--------AAMDARTGELAVTGLAVDSREVKPGDLFFALAGTKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                   +A + + A ++    A   +  P +   N R+ L+L A++ Y + P  I AV
Sbjct: 53  --------DAAIAAGAVAVVGDHAPAGACVPSVATSNPRRALALAAAKFYPRQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G  S  IG    ++ S A    +TTP PI L + L  L  
Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVAPSRAVYGSVTTPDPISLHRELDQLVG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ+RLDG+++ A  FTNL RDH+DYH T   Y + K+RLF +L+ 
Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISV 295
            +  A+I AD   S  V++ A     R++ VG +G   H    L         Q+VT+  
Sbjct: 225 PDGVAVISADHDCSGTVIEAASARNVRIMRVGRRGDGTHSGIRLADAVIEGFAQRVTLEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++     PL GEFQ+ NALV+AGL I  G D+  V   LE L    GR E VG    G
Sbjct: 285 AGRERIIRLPLVGEFQIENALVSAGLVIGTGGDADQVFAALEHLEGAKGRLELVG-ERNG 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             ++VDYAH  ++L   L+ +R   S +++VVFG GGDRD GKRP+MG++A   AD+ IV
Sbjct: 344 APVFVDYAHKPDALAKALQALRPYASRKLVVVFGAGGDRDAGKRPLMGEVAAANADVVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSE+P  IRA I+    G  E G+R EAIRTAI  L   D L++AGKGHET  IV
Sbjct: 404 TDDNPRSENPAAIRAAILAAATGAREIGDRAEAIRTAIVGLQPGDALLIAGKGHETGQIV 463

Query: 476 TNGEKKMSV-DCDII 489
            +     S  D  I 
Sbjct: 464 GDRVLPFSDHDAAIA 478


>gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 486

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 153/468 (32%), Positives = 233/468 (49%), Gaps = 26/468 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            +V SDSR +  G IFVA+ G K  G+ FIP+A+ +GA  +V S                
Sbjct: 15  RQVRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGAAFVVASEPAGQD---------- 64

Query: 91  PILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            +L  +N    L   A   +G  +    ++ VTGT+GK++ +  ++ I    G  +  +G
Sbjct: 65  RVLHHENPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIFTSIGYKTGVLG 124

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             +            TTP  + L + L+ + + GV  V +EASSH LDQ RL GI +   
Sbjct: 125 TVNYRWPGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHALDQKRLAGIDIHVA 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCR 266
            FT L RDH+DYH   + YF AK +LF    P+    ++I  DD + +++   A     R
Sbjct: 185 VFTGLSRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPHGRDLAGEAP----R 240

Query: 267 VLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           V+  G Q  F        V +  +   +  S +G+ +     LPG     N L A G  I
Sbjct: 241 VMGYGLQKNFSPELQGHLVQSTASGLVMECSHQGRSWTISCSLPGIHNAQNLLAAQGAGI 300

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G++     + L+ L  +PGR E V     G  IYVDYAHT ++LE +   ++ ++  R
Sbjct: 301 CLGLEPEH-FDCLKDLGPIPGRLEKVPAPE-GINIYVDYAHTPDALENVCLALKELSFSR 358

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           + V+FGCGGDRD+GKRP M +     AD   +T DNPR E+P +I  +I+ G+   P   
Sbjct: 359 LAVLFGCGGDRDRGKRPEMARAVAAHADAVFLTSDNPRFEEPGEIIKDILPGLAGHPCVE 418

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            + +R +AI+ A+ +L   + L+VAGKGHE    +       S   +I
Sbjct: 419 VEPDRRQAIQKAVSLLAPGEALLVAGKGHEDYQEIRGVRHDFSDTGEI 466


>gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
 gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
          Length = 479

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 160/477 (33%), Positives = 250/477 (52%), Gaps = 23/477 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  S+     
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKSIVIDK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q     G  +
Sbjct: 68  -------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     P    L      K    L+  G+ ++  EASSHGLDQ RL
Sbjct: 121 ASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D      V   
Sbjct: 181 REIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIDFVKDY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ  N L+A 
Sbjct: 241 LHNHNIKFITVGTKGDL-EITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAV 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                IG     V++ L ++  V GR E +        I+VDYAHT ++LE +L  ++ I
Sbjct: 300 LSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKVLTELKNI 355

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRAEII GI 
Sbjct: 356 KLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISGIE 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D +++R+ 
Sbjct: 416 KADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEVVRKC 471


>gi|303327353|ref|ZP_07357794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862293|gb|EFL85226.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 488

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 160/475 (33%), Positives = 245/475 (51%), Gaps = 20/475 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--SATIRSN 89
           EV SDSR +  G IFVA+ G  EDG  FIP A+  GA  +V            ++     
Sbjct: 18  EVRSDSRVVGQGDIFVAVPGVNEDGARFIPAAVEAGAAVVVCRPGGPEDAALQASVRAEG 77

Query: 90  TPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++  ++ R+ L   A      G     IL VTGT+GK++    ++++   +G     +
Sbjct: 78  CRVVYHEDPREALWRLAEARWRTGASRVKILGVTGTNGKTTSTYLLERLFTDAGHKVGVL 137

Query: 148 GPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G  S       +    TTP P+ +   L+ + + GV    +E SSH +DQ R+ G+    
Sbjct: 138 GTVSYRWPGHSEAAPLTTPDPLRVHSMLAQMEAAGVDVAVMEVSSHAIDQQRVCGVPFAG 197

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL +DH+D+H+  ++YF  K RLF EL   E    + ADD + + +++       R
Sbjct: 198 AAFTNLTQDHLDFHKDMESYFKTKARLFLELPRAEKVMAVNADDPWGRRLLE----LCPR 253

Query: 267 VLSVGYQGKFIHLKK-----VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            LS G Q      +      + A     ++ + +EG+ ++   PL G F   N L    L
Sbjct: 254 ALSFGLQQGPPRRRHLWGELLSAGTEGCRLRMHLEGRTWELRSPLVGAFNASNLLTVQAL 313

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  G+D     + LE    V GR E V  NS+G  ++VDYAHT ++L  +LK +R    
Sbjct: 314 ALETGLDPGQ-FKALESFTGVCGRLERV-ENSQGLNVFVDYAHTPDALVNVLKALRGAGF 371

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            RII VFGCGG+RD+ KRP+MG+     AD+A++T DNPR E+PE I  +++ G+    E
Sbjct: 372 KRIITVFGCGGNRDRTKRPLMGEAVARYADVAVLTSDNPRFEEPEAILRDVLPGLKEARE 431

Query: 442 ---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              + +R  A   A++ML K D L++AGKGHE   I+  G K    D +++RE+L
Sbjct: 432 VLVEVDRHAATARALDMLGKDDALLIAGKGHEDYQII-QGVKHHYSDQEVVRELL 485


>gi|188584361|ref|YP_001927806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
 gi|179347859|gb|ACB83271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
          Length = 487

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 214/493 (43%), Positives = 288/493 (58%), Gaps = 19/493 (3%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P L +           R +  +++DSR +  G +FVA+ G   DG LF          A 
Sbjct: 4   PTLADLFPEADAAIAARPVAGLTADSRRVVPGGVFVAVPGTAADGRLF---------AAA 54

Query: 72  VVSSAYSLQDFSATIRSNTPI----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              +         T  ++ P     + V   R+ L+L A+RL G+ PE ++AVTGTSGKS
Sbjct: 55  AARAGAVAVAGEGTRPTDLPEATAWIEVAEARRALALAAARLSGRQPETVVAVTGTSGKS 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVS 186
           SVA FV+QI  R G  S  +G    +++   +    TTP P+ L + L+ L+ +G+T ++
Sbjct: 115 SVADFVRQILSRLGRESASLGTVGIVTNRGAEYGSLTTPDPVTLHQTLARLAGEGITDLA 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASSHG++Q RLDG+ L A +FTNLGRDH+DYH T + Y  AK+RLF  LLPK  PAI+
Sbjct: 175 MEASSHGIEQRRLDGVALTAAAFTNLGRDHLDYHPTVEDYLEAKLRLFTTLLPKGRPAIV 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD AY++ V+  A  AG  VL+ G  G FI L +   +   Q +T++ +G+++    PL
Sbjct: 235 NADGAYAERVIGVADAAGHTVLTTGRSGDFIRLIESGTVGFSQSLTLAHDGREYRVRLPL 294

Query: 307 PGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            G FQV NALVAAGL ++      D A V   LE L  VPGR E +G  + GG   VDYA
Sbjct: 295 VGGFQVENALVAAGLALSTQAGAADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYA 353

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +LE +L  +R   SG+++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E
Sbjct: 354 HKPEALEHVLTALRPFASGQLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNE 413

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +P  IRA I+   PG  E G+R EAIR  +  L   DVLVVAGKGHET  IV +      
Sbjct: 414 EPAAIRAAILAAAPGAEEIGDRAEAIRAGVRGLRAGDVLVVAGKGHETGQIVGS-RVLPF 472

Query: 484 VDCDIIREILGLI 496
            D D +R  +  +
Sbjct: 473 SDHDTLRAAIAEL 485


>gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
 gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
          Length = 491

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 231/488 (47%), Gaps = 26/488 (5%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS       + +I  +  DSR +    IF  I G   DGH ++  AI  GA  +V S  
Sbjct: 2   KLSALFDNAPDIEIENLMVDSRDVLPNSIFFCIKGMIHDGHRYVNAAIKNGAVCVVHSED 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQ 134
               +      +N   + V +    L+  A+  YG   + ++    TGT+GKSS+A  ++
Sbjct: 62  IKRNN------ANVVYIKVRDVTAALNQVAACFYGYPSKKMVVYGVTGTNGKSSIACMIR 115

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTT----PSPIYLAKALSYLSSQGVTHVSVEAS 190
            +        +  G   TIS    D +L      P  + L + L  ++  G+   ++E S
Sbjct: 116 NLLN----PVYACGYIGTISIEYGDTKLPPLLTTPDIVPLQQILHDMAQAGMKACALEIS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S GL+QHR D + +    FTNL  DH+DYH T + YF AK RLF++L P +  AI   DD
Sbjct: 172 SIGLEQHRTDSVDVDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQLKP-DGTAITNKDD 230

Query: 251 AYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            +   ++    +   RV++ G  +      K +    +K   T+  +G ++     L   
Sbjct: 231 PHGMAIVA---DCPARVVTYGVLEKADYEAKDIQLNADKTIFTLVHDGSEYPVQTNLVAM 287

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F +YN L         G+    +LE L  +  + GR E +    +   I VD+AHT + L
Sbjct: 288 FNLYNLLAVIAALHEGGLPIEQILEQLNTIPQIEGRMERI-EEGQPFNIIVDFAHTPDGL 346

Query: 370 EMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           E I K    IT    RII VFG  G RD  KRP+ G++A    D+ I+T+D+PR EDP +
Sbjct: 347 EQIFKFASAITPKEKRIISVFGSAGKRDTKKRPVFGQLADKYCDLIILTEDDPRDEDPIQ 406

Query: 428 IRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  EI  GI     I   +R +AIR A+E+ N  D +++ GKG ET      G +    D
Sbjct: 407 IAEEIAAGIQKTNRIIIESRYDAIRQAVEVANVGDTILILGKGDETFIYREFGREPWMSD 466

Query: 486 CDIIREIL 493
              +R+ L
Sbjct: 467 PAAVRDAL 474


>gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
 gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
          Length = 482

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P            + A   +D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PA------AIAKGAIAILCEDMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 228 -PKNAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 503

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 160/477 (33%), Positives = 243/477 (50%), Gaps = 18/477 (3%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIRS 88
             +  DSR+I  G +FVA+ G+K DG L+I  AI +GA A+++ S    ++    +   +
Sbjct: 25  TGMELDSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDITISKKYSYHLN 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P++ V+   ++LS  A   Y       +++ VTGT+GK+++   + +  Q  G  S  
Sbjct: 85  KIPVVHVNYLPRYLSDIAGSFYNHPSRFLDLIGVTGTNGKTTITHLLARWVQLLGKKSAV 144

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     + +    +  TT S I   K LS      +T V++E SSHGL+Q+R+D +   
Sbjct: 145 MGTLGNGMLNNMCLSNNTTCSSIDAQKILSQFVKDKITFVAMEVSSHGLNQYRVDALYFK 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTNL  DH+DYH     Y  +K RLF+EL  +    II ADD      +     A  
Sbjct: 205 AAIFTNLSHDHLDYHGNVMQYSMSKWRLFDELCVE--KYIINADDPVGCRWLYYLPQAIA 262

Query: 266 RVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             ++      ++GK+I   KV    +   +T             L GEF V N L+A G 
Sbjct: 263 VTITRNLPFFWKGKWICALKVNYHIHGTDITFDSSWGHGVIHSQLLGEFNVSNLLLALGT 322

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +G   +L++    +L  V GR E V  +     + VDYAHT ++LE +L +IR    
Sbjct: 323 LLILGYPLSLLVHTSSQLQPVAGRME-VFRSHGYPTVIVDYAHTPDALEKVLISIRQFYY 381

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            G++  VFGCGGDRD  KR +MG I    AD  I+T+DNPR+E+P+ I  +I  GI    
Sbjct: 382 WGQLWCVFGCGGDRDPSKRALMGCIVSRYADYIIITNDNPRTEEPQSIINDITRGITHRK 441

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  NR  AI+TAI   + +DV++++GKGHE   I+ N  +    D DI+   L
Sbjct: 442 KIIKIIQNRCCAIQTAILKASLEDVILISGKGHEKYQIIGNN-RIYHSDKDIVENFL 497


>gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
 gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
          Length = 499

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 150/508 (29%), Positives = 236/508 (46%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+                    +  N+++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWL-----------HYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDF----SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
            + +  GA A++V +  + Q      S        I     +R+  ++ A R    H   
Sbjct: 51  EKVLDLGAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSA 110

Query: 116 ----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYL 170
                ++ +TGT+GK+S +  + Q+    G  +  +G     +     D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVSFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHN 287
             LF          ++  DDA     +    +   ++      G+Q    + K       
Sbjct: 231 QSLFR--FSTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQ 288

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+     + +   PL G F + N L A       G D   + E ++ L  V GR E
Sbjct: 289 GVSATLVWPEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRME 348

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              T +    + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MGK A 
Sbjct: 349 RFTT-ANNITLVVDYAHTPDAIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAE 407

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++
Sbjct: 408 QYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILL 467

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AGKGHET      G +    +  + R++
Sbjct: 468 AGKGHETYQE-AAGVRHDYDERALARQL 494


>gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
 gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
          Length = 509

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 173/517 (33%), Positives = 258/517 (49%), Gaps = 47/517 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL     P       I       R+IN +  DSR +++G +F A+ G   DGH FI
Sbjct: 1   MRLEDLARVVDP-------IAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A  +GA A+V+            IR       V + R  +S  A+  YG+  +   ++
Sbjct: 54  ASARERGAVAVVLEDETRAPCGMEWIR-------VGDARLAMSRMAALFYGQPTDGVPVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ I  R+G+ +  +G  S    S       TTP  + L   +  L
Sbjct: 107 GITGTNGKTTTTYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SSH L+Q R+D  +     FTNL RDH+DYH+  ++YF +K RLF EL
Sbjct: 167 VDEGAKAVVMEVSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTEL 226

Query: 238 LPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
           +  +       A I  DD+Y   +++ A      V+S G      +  + V    +    
Sbjct: 227 VAPDGVKPRRAAAINRDDSYGARLVETA---VAPVISYGLAADAAVRAENVVFSVDGIAG 283

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+        F   L G F +YN L A    + +G+   ++L  +E    VPGR E V  
Sbjct: 284 TLVTPFGTAPFHSHLLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVH- 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N RG  + VDYAHT ++LE +LK +  + +GRII VFGCGGDRD+GKRP+M +I+   + 
Sbjct: 343 NERGVTVLVDYAHTGDALENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSH 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--------------PGFIEKG-----NRIEAIRTA 452
           + IVT DNPR+E+P  I  E++ GI               GF+EKG     +R +AIR A
Sbjct: 403 LTIVTSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLA 462

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             +    D++++AGKGHE   I+   EK    D +  
Sbjct: 463 ATVAVAGDIVLLAGKGHEDYQIIGT-EKFHFDDREEA 498


>gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
 gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
          Length = 482

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 242/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P            + A   +D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PA------AIAKGAIAILCEDMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I   +     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 228 -PKNAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
 gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
          Length = 482

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 242/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P            + A   +D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PA------AIAKGAIAILCEDMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I   +     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 228 -PKNAFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991764|gb|EEC57768.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
          Length = 502

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 161/512 (31%), Positives = 250/512 (48%), Gaps = 36/512 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ ++I K    +I+          +  +  ++SDSR + AG  FV I+G   +GH +I
Sbjct: 5   MKISNIIEKINASVISG-------SCDADVTGLTSDSRKVTAGGAFVCIMGAVSNGHTYI 57

Query: 61  PQAIAQGAEAIVVSSAYS-LQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
              I +GA  IVVSS Y  +Q FS A I  N  ++  D+TR   +L ++  +G   E + 
Sbjct: 58  QDVIGRGAGLIVVSSKYDYMQHFSDAKIPENVTVVETDDTRLAYALMSAAWFGYPAEKLF 117

Query: 119 AVTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
            +  T  K        ++ + +  G  +  IG   TI     +    TTP    + ++ +
Sbjct: 118 TIGITGTKGKTTTTYMIRNVLESCGHKTGLIGTIETIIGDEHKPAHNTTPESYEIQESFA 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
            +   G   V +E SS GL  +R  GI+   G FTN+  DHI    H + + Y + K +L
Sbjct: 178 KMVEAGCEAVVMEVSSQGLMLNRTAGIQFNIGVFTNIEPDHIGPNEHSSFEDYLSCKAKL 237

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQ 290
           F +        I+ ADD +   ++    NA CRV   G+          K++   H K  
Sbjct: 238 FRQC----DIGIVNADDEHVDRILA---NATCRVEKYGFSETADIRAADKELLYEHGKLG 290

Query: 291 VTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               V G  + D    +PG F +YN+L A  +     +D   + + L  +  V GR + V
Sbjct: 291 TKYHVSGLVNLDIELCMPGNFSIYNSLCAIAVTRHFNVDEQRLKKALYDVR-VRGRIDIV 349

Query: 350 -----GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
                  + R   I VDYAH + +LE +LK ++     RI+ VFGCGG+RD+ +R  MG+
Sbjct: 350 DLAEVNASRRDFTIMVDYAHNAMALESLLKTLKEYNPKRIVTVFGCGGNRDRDRRFEMGE 409

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
           ++  L+D  I+T DNPR+E+PE I A+I+ GI       +E  +R EAI+ A++     D
Sbjct: 410 VSGRLSDFTIITSDNPRNEEPEAIIADIVTGISRTSGRHVEIADRREAIKYAVDNAQPGD 469

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           V+VVAGKGHE    +  G K    D ++I E 
Sbjct: 470 VIVVAGKGHEDYQEIK-GVKHHMDDRELIIEA 500


>gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 495

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 153/511 (29%), Positives = 245/511 (47%), Gaps = 39/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L       +I+          + +I  + +DSR ++ G +F+ + G+  DGHLF 
Sbjct: 1   MKLKQLSSVLAAAVIDGSG-------DVEITGIETDSRQVKPGDLFICLPGHTVDGHLFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA  +GA A+VV     +         + P ++V ++R  ++  A+  + +      ++
Sbjct: 54  AQAAEKGAAALVVERKLEV---------DLPQVIVKDSRFAMAGLANTFFDQPSARMKMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I    GL +  IG       + +     TTP  + L + L+ +
Sbjct: 105 GVTGTNGKTTTTYLIETIMNDHGLKTGLIGTIQMKYGNQSFPMPRTTPEALELQRYLNDM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G     +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK   F  L
Sbjct: 165 ANAGTECCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRL 224

Query: 238 LPK-------ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
                        A++ ADD  S    K        V++ G  +   +    +       
Sbjct: 225 GNAFAKDEKSRKYAVLNADDDASAYFAKITA---AEVITYGLGEDADVRASNISITAQGT 281

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +       D    + G+F VYNA+ A    +  G+    +   LE +  V GR E V
Sbjct: 282 SFHVDTFRGSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKSSLESVPGVDGRVEVV 341

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT + LE +L+ +     GR++ VFGCGGDRD+ KRPIMGKIA   
Sbjct: 342 D-EGQPYAVIVDYAHTPDGLENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKY 400

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +D+ +VT DNPR+EDP+ I  +I  G+         +    +R +AI  AIEM +  DV+
Sbjct: 401 SDVVLVTSDNPRTEDPDLILKDIEAGLIEDGVAAESYNLIVDRRKAIEKAIEMASPGDVV 460

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHET  ++  GE     D  + ++ +
Sbjct: 461 LIAGKGHETYQLIA-GEVLDFDDRIVAKDAI 490


>gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
          Length = 483

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 158/488 (32%), Positives = 241/488 (49%), Gaps = 21/488 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    +Q  E  I   +  DSR I  G IF+A+ G+  DGH FI  AI +G
Sbjct: 3   KFMDKILEGLEYKVLQEPETNIFTGMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  + VS   S Q            +++ N RK L + AS  Y   P+  + + G +G +
Sbjct: 63  ARLVFVSKEVSCQ-------QGIGYILIKNLRKHLGVLASNFY-DWPQKKMKILGVTGTN 114

Query: 128 SVASFVQQICQRSGL-SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
              +    + Q  G     + G     I     +   TTP  + L K +     QG+ ++
Sbjct: 115 GKTTTTYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLIKMIKKAHDQGLEYI 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L+  R++ ++     FTNL  DH+DYH+T + YF AK +LF +L  K    I
Sbjct: 175 VMEVSSHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-GIKI 233

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              DD+Y K + +  H      +S G     +  K +     ++++ +S+ G   +    
Sbjct: 234 FNIDDSYGKRLWEEFHG-----VSYGMNKADVQGKILAFEGGREEIELSLFGNKKECKIQ 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G F +YN L +  L   +G+    +   L  L   PGRFE +    +   + +DYAHT
Sbjct: 289 ILGGFNLYNLLGSLALVKELGMSDEDIFSKLGNLKGAPGRFETLDC-GQDYMVIIDYAHT 347

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE IL+ ++ I SG+II +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+P
Sbjct: 348 GDALENILQAVQEIKSGKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENP 407

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           E I  E+  G      I    R EAI   I   NK D++++AGKGHET  I+   +K   
Sbjct: 408 ESILEEVKSGFTKENHICILERAEAIAEGIRRANKGDMVLIAGKGHETYQILGR-KKYHF 466

Query: 484 VDCDIIRE 491
            D +  R 
Sbjct: 467 DDREFARR 474


>gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 506

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 145/476 (30%), Positives = 229/476 (48%), Gaps = 19/476 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I  G  FVA+ G    G  +IP A+ +GA+ +V   A +    +  +      
Sbjct: 33  VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVA-PASARDLVAPAVEKRALA 91

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +  DN    L L A   +        ++ +TGT+GK++ +  ++ +   +G+    +G  
Sbjct: 92  VYHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGIKVGVLGTV 151

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +     F  D  LTTP    + + L  +    V    +E SSH LDQ+R+ G+   A   
Sbjct: 152 NYRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVL 211

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-------- 261
           TN+ +DH+DYH   + YF AK RLF   L      +I  +D Y + ++            
Sbjct: 212 TNVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGIGYGIG 271

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           ++      VG +   +  + +       Q+  S +GK +    PL G F   N L A  +
Sbjct: 272 DSSLVTHEVGDKP-MVQGRILSLTGQGMQIETSYKGKSWVVESPLIGAFNAMNLLAAQAV 330

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +G++   +   L+    VPGR E V  N +G  I+VDYAHT ++LE +   ++++  
Sbjct: 331 GLQLGLNCKDMC-VLKDFPGVPGRLERV-INDQGLDIFVDYAHTPDALENVQHTLKSLDF 388

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
            R+I VFGCGGDRD+ KRP+M K     AD+A++T DNPRSE PE I  +   G+     
Sbjct: 389 KRLITVFGCGGDRDRAKRPLMAKAVARYADVAVLTSDNPRSEKPEAIMDDARPGLARAAV 448

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +E  +R  AI  A+  +   DVL++AGKGHE    +  G      D +     +G
Sbjct: 449 VLEHPDRQTAITMAVAGMQPGDVLLIAGKGHEDYQQIA-GTTIHFSDKEAALRAIG 503


>gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
 gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
          Length = 487

 Score =  362 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 237/503 (47%), Gaps = 28/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +++L  K    + +    +P ++   ++  +S +S+ I+ G++F AI GN+ DGH FI
Sbjct: 1   MTVKELFDKSNIRIEDIKEHYPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            +A    A   VV                   + V +T + L   +   Y    + +   
Sbjct: 61  QEAFKNKAIGAVVEKDVDY----------VNTIKVRSTLQALRETSLVFYDYPFKKLFLG 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176
           +VTGT+GKS++   +     +    SF +G    +      +    TTP    + + L  
Sbjct: 111 SVTGTNGKSTITWILSHAVNKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQ 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                + +  +E SSH L   RL GI+  A  FTNL RDH+D+H + + YF  K  LF  
Sbjct: 171 AIQLDMKYGFLEVSSHALKLGRLHGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTS 230

Query: 237 -LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L + +  +I  DD Y   +     +      S+  +      K        + V + V
Sbjct: 231 TYLKENAFVVINIDDLYGINLYNGIKDFRKASFSLENEKASFFGK---FEPVDRGVCLLV 287

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           EG+         G F   N L A      +GI+   + +    L    GR E V T  + 
Sbjct: 288 EGQKVFAPIY--GRFNASNLLGAYTFLRMMGIEKDKLGDAFVDLVAPYGRLECVQT--KP 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I++DYAHT + LE +LK++R +   +II+VFG GG+RD+GKRPIMG+IA   +D  I+
Sbjct: 344 FKIWIDYAHTPDGLEKVLKSLRDMVEKKIILVFGAGGNRDKGKRPIMGRIAAQFSDYTII 403

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR EDP  I  EI  G        F    +R EAI+ AIE+    D +++AGKGHE
Sbjct: 404 TSDNPRYEDPMSIIDEIKSGFLSVKNSNFEILSDRREAIKRAIEIARDNDAIIIAGKGHE 463

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               + NG K    D ++++E++
Sbjct: 464 DYQEI-NGVKYPFSDKEVVKELI 485


>gi|323487025|ref|ZP_08092337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
 gi|323399673|gb|EGA92059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
          Length = 487

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 240/504 (47%), Gaps = 35/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++ + +   EL+           + ++++V  DSR   AG +FV + G   D H FI
Sbjct: 1   MKLREWLKEMEYELL-------QGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  I +GA+ +V   A        T+     +L V N R  LSL ++  +G +P   +  
Sbjct: 54  PDVIQKGAKVLVTEEAV-------TVPEEITVLRVGNGRNALSLLSAARFG-YPARKMTT 105

Query: 121 TGT---SGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
            G     GK++    ++ I + +G  +  IG     I S       TTP    L +  + 
Sbjct: 106 IGVTGTKGKTTTTYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +  QG  ++ +E SS     HR+DGI      F N+  DHI    H + + Y   K  L 
Sbjct: 166 MVEQGCRYMVMEVSSQSYLMHRVDGIFFDYSIFLNISNDHIGPNEHASFEEYLYYKKLL- 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTI 293
              L      ++  DD + +E+++ A  A  +  S+ +   F     K    H+   +  
Sbjct: 225 ---LQNSRVCLVNRDDGHYREIIEGAK-AEIKTFSMEHSADFRAADVKYIREHDFVGLDF 280

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +EG  +      +PG F VYNA+ AAG+C  +G+    V   LE +  V GR E V  +
Sbjct: 281 KMEGDYESRLRVNVPGLFNVYNAMAAAGVCSCLGLSKERVAHALEHMQ-VDGRMEIVYKS 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           ++   + VDYAH + S+E +L  +R     R++VVFGCGG+R + +R  MG+I   LAD+
Sbjct: 340 AK-CTVIVDYAHNAVSMESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADL 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +I+T DN R E    I A+I  G+      FIE  +R EAI  ++    + D++ + GKG
Sbjct: 399 SIITADNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQEGDIIAIIGKG 458

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           HE    +  G +   +D  +++E 
Sbjct: 459 HEDYQEIE-GVRHPFLDRTVVQEA 481


>gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Bacillus sp. m3-13]
          Length = 496

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 145/468 (30%), Positives = 236/468 (50%), Gaps = 20/468 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ + SDSR +    +FV I G   DGH +I  AI +GA  IVV      QD    +   
Sbjct: 23  VSNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEKGASVIVV------QDMPEQLVEG 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V +T + L   A+  +      +  + VTGT+GK++V+S +  + ++ G  +   
Sbjct: 77  ICYVHVRDTERALGQLANAFFDFPSTKLRIVGVTGTNGKTTVSSVINNVMRKEGYKTGLS 136

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I     +++ TT   + + + L  +   GVT V +E SSHGL   RL G++   
Sbjct: 137 GTIEIDIDGEKFESKNTTSDVLTMQRMLKDMVEAGVTDVVMEVSSHGLVLGRLAGVEFQN 196

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNA 263
           G FTNL +DH+D+H T + Y NAK  LF +L   + K+  AI+  DDA +K+ ++     
Sbjct: 197 GVFTNLTQDHLDFHGTMENYKNAKGLLFAQLGQDMRKDKAAILNVDDAATKDYVQM---T 253

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G R+++ G +       +++    NK    +     +F+   P  GEF VYN L    + 
Sbjct: 254 GARIITYGIKNEADFKAREIQFFENKTSFVLETNFGEFELEIPFVGEFNVYNILSVICVL 313

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G+    +L HL +     GR + + T  +   + +DYAHT +++   L +IR  +  
Sbjct: 314 WDKGMPFERILNHLRETTPPSGRMQTLETGDK-RNVIIDYAHTEDAIGKALDSIRMFSKH 372

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFI 440
           +II + G GG RD+ KRP MG+IA + ++  I T DNP  E  E+I   +  G     F 
Sbjct: 373 KIISIIGTGGGRDKDKRPKMGRIATEKSEYVIFTTDNPLDEPGEEIVQGMAEGAVHENFE 432

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              +R +AI  A+E+  + DV+++AGKGHE   ++ N E     + +I
Sbjct: 433 CIPDREQAIIRAVEIAGEGDVILIAGKGHENYQLIGN-ESVPFDEKEI 479


>gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. D2]
 gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
 gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
          Length = 482

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P            + A   +D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PA------AIAKGAIAILCEDMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I      I         TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++L
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD      +    N   +V +   +       +V   H +  +   ++ 
Sbjct: 228 -PKNAFSLTNLDDKNG---LVMTQNIRSKVYTYSLRSLSDFKGRVLESHFEGML---LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|184159718|ref|YP_001848057.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|332873767|ref|ZP_08441709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
 gi|183211312|gb|ACC58710.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|193078569|gb|ABO13596.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
 gi|322509631|gb|ADX05085.1| murE [Acinetobacter baumannii 1656-2]
 gi|323519649|gb|ADX94030.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737990|gb|EGJ68875.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
          Length = 499

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 153/487 (31%), Positives = 237/487 (48%), Gaps = 34/487 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           QW ++  +  S DSR ++ G IF+A+       K     F   A+A GA A++  +   +
Sbjct: 16  QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQQ 135
            +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  + +
Sbjct: 74  AN----------EWVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          +G T   I      +  TT   + L  AL   + QG T  S+EASSHGL
Sbjct: 124 LISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA++ 
Sbjct: 184 EQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDDAHAD 241

Query: 255 EVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++K A N   +      S+       ++  +          +  +   F    PL G F
Sbjct: 242 LMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT ++L 
Sbjct: 302 NVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDALI 359

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +    D 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDV 478

Query: 487 DIIREIL 493
             +R  +
Sbjct: 479 VEVRSAI 485


>gi|163854998|ref|YP_001629296.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella petrii DSM 12804]
 gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bordetella petrii]
          Length = 943

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 240/480 (50%), Gaps = 26/480 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR + AG +FVA  G   DG  FI QA+A+GA A++  +          + ++  
Sbjct: 27  HLRLDSRDVAAGDVFVACSGGSADGRAFIGQALARGAAAVLCQAPA-----PGDVATDAR 81

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +  V + R+ L   A   YG+     +++AVTGT+GK+S   +V Q    +G     IG 
Sbjct: 82  VRAVPDLRELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIGT 141

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +          LTTP  + + + L+ + + G   V++EASS G++Q RLDG+++   
Sbjct: 142 LGAMLPDGRTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVA 201

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH + + Y  AK RLF+   P  + A+I ADDA  + +++         
Sbjct: 202 GFTNLTRDHLDYHGSMERYEQAKARLFQ--WPGLAAAVINADDAAGERLLRTLPRGLALG 259

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +          +++ A  + Q  T++    +   +  L G   V N L+ AG+   +G 
Sbjct: 260 YTQQDVPTAFQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYKLGW 319

Query: 328 DSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             A +   L     V GR + V        G   RG  + VDY+HT +SL   L  +R +
Sbjct: 320 PLAQLARALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVDYSHTPDSLARALAALRPV 379

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ +FGCGG+RD GKRP MG+IA DLAD   V+ DNPR EDP  I A+I+ GI
Sbjct: 380 ADARGGRLVCLFGCGGERDTGKRPEMGRIAADLADKITVSSDNPRGEDPAAIIAQIVAGI 439

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P       + +R  AI   I   +  DV+++AGKGHET      G K    D +  R  L
Sbjct: 440 PRGARLQVEADRARAIMQTIWAADPDDVVLLAGKGHETYQD-AGGVKLPFDDREWARLAL 498



 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 151/388 (38%), Gaps = 24/388 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R I A  +F+A+ G + DGH ++ QA + GA A +V+             ++ P
Sbjct: 505 ALSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIVAHPVDG--------ASLP 556

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            LV+ +TR+ L    +    ++   ++ V G++GK++    +  I         + G  +
Sbjct: 557 QLVLGDTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAILADW---QGEAGRLA 613

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F  D  +        A+  + +   G+ H    A    L               TN
Sbjct: 614 TAGNFNNDIGVPLTLLRLRAQHRAAVIELGMNHPGEIAVLAALA-------APSVALVTN 666

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             R+H ++  + +A         E L P++  A+   DD +       A     RVL  G
Sbjct: 667 AQREHQEFMHSVEAVAQENGASIEAL-PEDGVAVFPGDDPHCGIW--EAQAGARRVLRFG 723

Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            Q G  ++ +++ A  +  +  +       D + P+ G   + NAL A    +A G   A
Sbjct: 724 LQPGLDVYAEQIDATPHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAPLA 783

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             +  L     V GR +    +     I   Y    +S+   +  +  + + R +V+   
Sbjct: 784 GAVRALSAFSAVAGRMQRQTLDDGTILIDDTYNANPDSVRAAVDVLARLPAPRALVLGDM 843

Query: 391 GGDRDQG--KRPIMGKIALDLADIAIVT 416
           G   D G      +G+ A       + T
Sbjct: 844 GEVGDNGPAMHREVGEYARQHGIDTLYT 871


>gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
 gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
          Length = 491

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 150/503 (29%), Positives = 231/503 (45%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+    P  +  L           +  +S DSR I+   +FVA+ G + DG  FI
Sbjct: 1   MRLDLLLPFKVPAYLANLD----------VQGMSLDSREIKKNGLFVALQGAQLDGRSFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENIL 118
            +AI QGA  ++  + +S +     + +    ++V      +S  A       K+   ++
Sbjct: 51  EKAIHQGACVVLSETMHSAEHGDIKMHAQVAEILVFKLPYLISQIAYQFYFPKKNLHKVI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++AS +    Q   + + Q+G     +    + +  TT   I +   L+  
Sbjct: 111 GITGTNGKTTIASLLANALQLLDVKNAQMGTIGNGLFGQLKSSLNTTLDAISIFAELASY 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG  +  +E SSHGLD  R+  +   +  FTNL RDH+D+H T   Y  AK RLF E 
Sbjct: 171 QQQGAQYTLMEVSSHGLDLGRVQALPFYSAIFTNLTRDHLDHHGTMACYGLAKKRLFSEY 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTIS 294
             ++    I  DD   +  +    +A    +S G    Q ++  +K++            
Sbjct: 231 SLQQRI--INIDDPTGEMWLSEFSDA----ISYGKATNQKQYFTVKEIFYQKQGICFNFQ 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D     P  G F V N        +A G     + +   KL+ VPGR E    + +
Sbjct: 285 SSWGDGQISAPFYGHFNVQNLSAVLCQLLAEGFSITQLKKVFLKLNTVPGRMEQYYFSKQ 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                VDYAHT ++LE  L+ +      G +I +FGCGGDRD GKRP M K+A  LA   
Sbjct: 345 DITFVVDYAHTPDALEKALQALHQHSQKGELICLFGCGGDRDTGKRPEMAKVAEKLASQV 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+ DDNPR+E    I  +I+ G     G     +R EAIR A++  +  D+++VAGKGHE
Sbjct: 405 ILVDDNPRTEQASVIMQDILAGFTKKEGVQCIHSREEAIRYALKHASAGDIILVAGKGHE 464

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+       S      RE+L
Sbjct: 465 DYQIIGKERIHYSD-----RELL 482


>gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
 gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
          Length = 518

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 150/516 (29%), Positives = 249/516 (48%), Gaps = 35/516 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +++K     + Q+   P    E +I  ++ +S+  +   +FV I G++ DGH +I
Sbjct: 1   MKLS-VLFKRIQHAVIQM---PELEEEMEIRGITCNSQKAEEDSLFVCIQGSRADGHDYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA  I++    S          N  +++V +TR+ L+  +   +G   + +  +
Sbjct: 57  EEACNLGASCILIEKLVSG-GRMLKFPENVAVVLVKDTREALAGISRIWFGSPADKLKVI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GKS+VA  ++++ +  G     IG  +  + +    ++ TTP    +    + +
Sbjct: 116 GVTGTKGKSTVAVMIREMLESLGQKCGLIGTIAHHLGNEVVTSQNTTPDAFTIQSYFAKM 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
              G  +  +E SS G+ QHR+DGI      FTN G DHI    H +   Y   K  LFE
Sbjct: 176 VEAGCHYAVMEVSSQGIKQHRIDGIWFEIAVFTNFGEDHIGPGEHASLGEYRYYKSCLFE 235

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTI 293
           +            DDA    + +R     C       + +    +     H    ++++ 
Sbjct: 236 QCRIGIG----NLDDAQCSYMFQR---KCCTKYGFTCREEEGQERGFRNSHVLTAEKISF 288

Query: 294 SVEGKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            +EG +           +   LPG+F VYNAL A      +G +     + L+ L VV G
Sbjct: 289 LMEGGELKTVFYADDRKYELALPGKFNVYNALAALQTVSCLGFEREEAGDVLKHL-VVRG 347

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V         Y+DYAH + SL  +LK +R     RI++VFGCGG+R   +R  MG+
Sbjct: 348 RMERVDAGEN-ILCYIDYAHNAMSLAKVLKMLRIYEPERILLVFGCGGNRAGSRRSGMGR 406

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
           +A +LA++ I+T DNPR E+P KI A++  GI      +    +R EA+  A+EM  + D
Sbjct: 407 VAGELANLTIITSDNPRWEEPAKIMADVEEGIKETSGAYRMIQDREEAVLFAVEMARQGD 466

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +L++AGKGHE    +  G +    D +++R+ + L+
Sbjct: 467 ILLIAGKGHENYQEI-QGVRYPMDDRELVRKAVRLV 501


>gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 486

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 204/492 (41%), Positives = 268/492 (54%), Gaps = 22/492 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+           +    +     ++ ++ DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLHDLL--------GDAAGRDPEIAAVDVSGLAVDSRAVRPGDLFFALSGAKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    AI   +             + P + + N R  L++ A+R Y + P  I AV
Sbjct: 53  A-------AAIAAGAIAVAGGSPPGTALSVPYVELPNPRLALAMAAARFYPRQPATIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI Q+ G SS  IG    +S         TTP PI L + +  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQKLGHSSASIGTVGLVSDKRTVYGSLTTPDPIALHRQIDEITQ 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +L+P
Sbjct: 166 DGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVP 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295
               A+I AD   S +VM  A     R+++VG  G      I L         QQ+ +  
Sbjct: 226 PGGAAVISADHECSADVMAAAQARDLRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQH 285

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+ +    PL G FQV NALVAAGL I  G D   V E LE L    GR E VG    G
Sbjct: 286 CGRMYTIRLPLVGAFQVENALVAAGLAIGTGSDPQAVFEALETLEGAKGRLELVG-EHNG 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I++DYAH  ++L   L+ +R   + +++VVFG GGDRD GKRP+MG IA   AD  IV
Sbjct: 345 APIFIDYAHKPDALAKALQALRPYAARQLVVVFGAGGDRDTGKRPLMGAIAAAEADRVIV 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA I+   PG  E G+R EAI+ AI  L   D LV+AGKGHE   I+
Sbjct: 405 TDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIKVAIGELQPGDALVIAGKGHEVGQII 464

Query: 476 TNGEKKMSVDCD 487
             G      D +
Sbjct: 465 -GGTTLHFSDHE 475


>gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 514

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 168/511 (32%), Positives = 241/511 (47%), Gaps = 37/511 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE----DGHLFIPQ 62
           I      +++ L +      +     ++SD+R ++ G +FVA V        DG   IPQ
Sbjct: 12  IAARLVPVVDWLRVQAPAGAD-----LTSDTRKLKTGDVFVAYVLGNVRQHGDGRPHIPQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119
           AI  GA A++  +      ++    +   IL VD   +     A++ YG        ++ 
Sbjct: 67  AIEAGASAVLAEAHG----YTMPADAPVRILPVDGLAELAGPLAAQWYGVPGPEALRVIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S + ++ Q   + G     +G   T           TTP  I L ++L+ L 
Sbjct: 123 VTGTNGKTSCSQWIAQALTKHGERCAVVGTLGTGFVDALAVTGFTTPDAIQLQRSLADLH 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   +++E SSHGL+Q R+DG       FTNL +DH+DYH T   Y  AK RLF    
Sbjct: 183 RAGARAIAMEVSSHGLEQGRVDGTCFDIAVFTNLTQDHLDYHGTMAEYELAKARLFG--W 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-------IHLKKVCAIHNKQQV 291
           P    A+I  DDA    +++ A  A    +  G  G+          L+      ++   
Sbjct: 241 PGLRAAVINRDDAAGVRLLQNAR-ADIETIEYGIDGEAAAQHGAKQWLRASNVRAHRTGT 299

Query: 292 TISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           T  V+G         P  G F V N L   G  +  G+     + HLEKL  V GR E  
Sbjct: 300 TFDVDGSFGHATVHAPTLGLFNVSNLLAVLGALLTAGVPWPDAIAHLEKLQPVSGRMERF 359

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           G    G  + VDYAHT ++LE  L+ +  IT    G++  VFGCGGDRD GKRP MG IA
Sbjct: 360 G-GEDGPLVVVDYAHTPDALEQTLRALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIA 418

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLV 463
             LA   ++T DNPRSEDP+ I  EI  G+       +  +R  AI  A+   +  DV+V
Sbjct: 419 ERLAPHVVLTSDNPRSEDPQHILDEIADGMHNPRAATQIEDRAAAILHAVRHADAHDVIV 478

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           VAGKGHE+   +  G K+   D + +R  L 
Sbjct: 479 VAGKGHESTQEIA-GRKRPFSDQEHVRLALA 508


>gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella pealeana ATCC 700345]
 gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC
           700345]
          Length = 488

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 157/498 (31%), Positives = 234/498 (46%), Gaps = 21/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++DL+   F               E    E++ DSR +QAG++FVAI G + DG  FI
Sbjct: 1   MLIRDLLAPWF----------HYSGAE-DFLEITLDSRAVQAGYLFVAIPGYQVDGRKFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119
             A  +GA A +V +    +  +        IL     R+  +L A           I+ 
Sbjct: 50  AAAFERGASAALVHTDSPEKHGTVVNDGGLQILFFQLNRQISALAAQAYPLSQSRPQIVG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+SV   + Q+       +  +G     +     D+  TT  PI L K L  + 
Sbjct: 110 VTGTNGKTSVTQLIAQLQLLQSKQTAVMGTLGNGLWGELVDSGNTTADPITLIKQLQGVE 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G    ++E SSHGL Q R++ +      FTNL RDH+D+H T + Y  AK RLF+   
Sbjct: 170 QRGADTCAMEVSSHGLVQGRVEAVPFDVAVFTNLSRDHLDFHHTMEEYGIAKKRLFQFAN 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +    +I  DD   +E +    +      SV G     I+ K           T+    
Sbjct: 230 LRGG--LINIDDVVGREWLADLASDKLLGFSVKGDSTADIYTKDNHFHDGGVSCTLVWPT 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     PL G+F + N + A G    +G D   ++    KL  V GR E   T+  G  
Sbjct: 288 GEAQLNSPLLGDFNLSNLVAALGALYLLGEDMHTLVALAPKLEPVAGRMERF-TSKDGVT 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +++E  LK +R    G++  +FGCGGDRD+GKRP+M   A   AD  +VT 
Sbjct: 347 LVVDYAHTPDAIEQALKALRVHCKGQLWCLFGCGGDRDKGKRPMMAASAEQFADRVMVTS 406

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DN RSEDP  I ++I+ G+      + +  R  AI+  +      D++++AGKGHET   
Sbjct: 407 DNCRSEDPNAIISDILAGLQHPQQALSQVERQVAIKEIVAQAASGDMVLLAGKGHETYQE 466

Query: 475 VTNGEKKMSVDCDIIREI 492
           V NG+K    +    + I
Sbjct: 467 V-NGKKLNYDERAFAKAI 483


>gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
 gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
          Length = 479

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 159/477 (33%), Positives = 250/477 (52%), Gaps = 23/477 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  ++     
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q     G  +
Sbjct: 68  -------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     P    L      K    L+  G+ ++  EASSHGLDQ RL
Sbjct: 121 ASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D    + V   
Sbjct: 181 REIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ  N L+A 
Sbjct: 241 LHNHNIKFITVGTKGDL-EIIRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAV 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                IG     V++ L ++  V GR E +        I+VDYAHT ++LE  L  ++ I
Sbjct: 300 LSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKALTELKNI 355

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRAEII GI 
Sbjct: 356 KLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISGIG 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D +++R+ 
Sbjct: 416 KADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEVVRKC 471


>gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens KN400]
          Length = 509

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 173/517 (33%), Positives = 258/517 (49%), Gaps = 47/517 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL     P       I       R+IN +  DSR +++G +F A+ G   DGH FI
Sbjct: 1   MRLEDLARVVDP-------IAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A  +GA A+V+            IR       V + R  +S  A+  YG+  +   ++
Sbjct: 54  ASARERGAVAVVLEDETRAPCGMEWIR-------VGDARLAMSRMAALFYGQPTDGVPVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ I  R+G+ +  +G  S    S       TTP  + L   +  L
Sbjct: 107 GITGTNGKTTTTYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SSH L+Q R+D  +     FTNL RDH+DYH+  ++YF +K RLF EL
Sbjct: 167 VDEGAKAVVMEVSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTEL 226

Query: 238 LPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
           +  +       A I  DD+Y   +++ A      V+S G      +  + V    +    
Sbjct: 227 VAPDGVKPRRAAAINRDDSYGARLVETA---VAPVISYGLAADAAVRAENVVFSVDGIAG 283

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+        F   L G F +YN L A    + +G+   ++L  +E    VPGR E V  
Sbjct: 284 TLVTPFGTALFHSHLLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVH- 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N RG  + VDYAHT ++LE +LK +  + +GRII VFGCGGDRD+GKRP+M +I+   + 
Sbjct: 343 NERGVTVLVDYAHTGDALENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSH 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--------------PGFIEKG-----NRIEAIRTA 452
           + IVT DNPR+E+P  I  E++ GI               GF+EKG     +R +AIR A
Sbjct: 403 LTIVTSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLA 462

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             +    D++++AGKGHE   I+   EK    D +  
Sbjct: 463 ATVAVAGDIVLLAGKGHEDYQIIGT-EKFHFDDREEA 498


>gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 505

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 148/503 (29%), Positives = 234/503 (46%), Gaps = 35/503 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           QDL+ K             +   + +I  + S S  +  G +F+ + G   DGH ++ +A
Sbjct: 11  QDLLVKRM-----------IGNPDTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVNEA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           I +G  A++             +  + P +VV +TR+ +++ A   YG      N++ VT
Sbjct: 60  IQRGCAALMAEKKVE------RLEGSIPCIVVPDTRRAMAVLADAYYGHPSNAMNLIGVT 113

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT+GK++    ++ I   +G  +  IG  S  + S+ +    TTP  + L   L  ++ +
Sbjct: 114 GTNGKTTTTHMIEHIFHHTGHKTGLIGTVSMKLGSYIEKTENTTPESLVLQSMLKRMADR 173

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              +  +E SSH L   R+ G       FTNL  DH+DYH +   Y   K  LF +L   
Sbjct: 174 EAKYAVLEVSSHALRMGRVRGCNFKTAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLGNS 233

Query: 241 ES----PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  AI+ ADD +SK++   A     +V+  G  Q   +   ++          +  
Sbjct: 234 YGSLPKVAILNADDPFSKKL---AAKTSAQVIHYGIDQPSDVRASEIRMNQESTSFWLDT 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     + G F VYNAL A  + +  GI    + + LE    V GRF+ + T  + 
Sbjct: 291 YLGSTWIHLNVVGIFNVYNALAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQAIET-GQD 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ VDYAH  + LE ++   R IT G+II + GC GDRD+ KRPIM   A  LAD AI+
Sbjct: 350 FQVIVDYAHNPDGLEKVISTARAITKGKIIALIGCEGDRDKAKRPIMAAKAAILADKAIL 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPRSE  E I  +++ G+            +R +AI  A+E+    D +++ GKGHE
Sbjct: 410 TSDNPRSERSESILEDMVRGLDNAGLSRCETITSRKDAIHRALELAKTGDCVLILGKGHE 469

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I  + +     D +I    L
Sbjct: 470 TQQIFKDHQIP-FDDAEIAMHWL 491


>gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 513

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 258/503 (51%), Gaps = 19/503 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           K+Q L       L+  +    ++ +E  + ++S DSR + AG +F+A+  ++ +    + 
Sbjct: 7   KMQSLTL-----LLQDVVAEGVELQEYMLTDISMDSRRVTAGGLFLALAKDEAERQKHLH 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENI-- 117
           QA+ +GA A+++ +   L      + +   +    V N  +     A+R Y +  +++  
Sbjct: 62  QALDKGAFAVLIDADKPLTQTETAMLNEAVVSAYPVKNLSQQAGSIAARFYQQPSQHMTV 121

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           +AVTGT+GK+SV+ F+ Q+ +  G     IG       S  +   +TTP P+ + + L+ 
Sbjct: 122 IAVTGTNGKTSVSQFIAQVLEADGKPCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAG 181

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +G  +V +EASSH L+Q RL+ + +     TNL RDH+DYH T   Y  AK RLFE 
Sbjct: 182 FELEGCEYVVLEASSHALEQGRLNSVDINVAVLTNLSRDHLDYHHTMADYAKAKQRLFE- 240

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +   S A+I A D++ + +M    +    +         +    +    +  Q  +++ 
Sbjct: 241 -MGSVSRAVINACDSFGRTLMNALRSDIQLLTYSSSDQADVSASAIQCHRDGMQFDLAIH 299

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+      P+ G F V NAL   G+ ++IG   +   + L +   V GR E  G + +  
Sbjct: 300 GQQQKTTLPVLGRFNVDNALATLGVLLSIGYQPSQARQALSQCRAVAGRMEAYGVDGQPM 359

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  DYAHT ++LE  L+ +R      G++  VFGCGGDRD+GKRP+MGKIA   AD  I
Sbjct: 360 LVI-DYAHTPDALEQALRTLRGHLNQQGKLWCVFGCGGDRDKGKRPLMGKIAEIEADEII 418

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPR+ED + I  +I+ G         + +R  AI  AI      D+++VAGKGHE 
Sbjct: 419 ITDDNPRTEDHQAIAEDILAGCQQPHAIRVELDRKVAISYAISHAAPNDIVLVAGKGHEA 478

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              + +  K    D  II+E+LG
Sbjct: 479 YQEI-DHIKFPFSDTVIIKEMLG 500


>gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 488

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 158/470 (33%), Positives = 234/470 (49%), Gaps = 23/470 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR I+ G +F A+ G   DG  FI +A   GA  +V                + P++ 
Sbjct: 23  LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKGD-------IGPCSVPVIE 75

Query: 95  VDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           +DN  + L   A+  YG     ++  AVTGT+GK++ A+++  +  R G     IG    
Sbjct: 76  IDNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGC 135

Query: 152 TISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           T++     +  +TTP P+ L    + L S+G    ++EASS GL+Q RLDG ++    FT
Sbjct: 136 TLNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFT 195

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL RDH+DYH T + Y  AK  LF    P  + A+I      ++++MK A  AG  +L+V
Sbjct: 196 NLTRDHLDYHGTMENYLRAKEILFR--WPTVASAVINQSGEPAQQIMKTAEGAGKAILTV 253

Query: 271 ---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G Q  ++  + +       +  +  +G  F       G F V N L   G  I++G 
Sbjct: 254 SAKGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGF 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRI 384
           +   VL+ + KL    GR + V  +  G    VDY+HT +++   +K +  +     GRI
Sbjct: 314 EIETVLKEVAKLMPPAGRMQIV-RDDHGPIFAVDYSHTPDAVTQAIKALEGLAEARGGRI 372

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKG 443
            +V G GGDRD GKRP+MG+ A   AD  ++T DNPRSED ++I  +I  G         
Sbjct: 373 WIVVGAGGDRDHGKRPLMGQAACA-ADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE 431

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R +AI  A E     DV++VAGKGHE    V  G K    D +  RE L
Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKGHEDYQEVK-GVKHHFSDVEETREAL 480


>gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
 gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
          Length = 494

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 236/479 (49%), Gaps = 8/479 (1%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +I   +     +  +  DSR +  G  FVA+ G+  DG  FI  AI  GA A++  S   
Sbjct: 16  NISADKSANIAVQHLELDSRKVTNGTTFVAVKGHAVDGRRFIASAIELGANAVIAESCEQ 75

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
               +       P++ +      LS  ASRLY  H   I+ VTGT+GK+++   + Q  +
Sbjct: 76  HLAGTIEYIDTIPVIYIAQLGTHLSALASRLYPLHEHQIIGVTGTNGKTTITQLIAQWLE 135

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  +  +G T        Q    TT + I + + L  L  Q     ++E SSHGL Q 
Sbjct: 136 LIGKKAAVMGTTGNGFLDDLQPAANTTGNAIEIQQTLHQLEQQSAQFTALEVSSHGLVQG 195

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+  +    G F+NL RDH+DYH T + Y  AK  LF E       A+I  DD      +
Sbjct: 196 RVKALDFAVGVFSNLSRDHLDYHGTMEEYAEAKFSLFSEHNCHN--AVINIDDQVGSRWV 253

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +R  NA    L      + +  K V    +   ++I       D + PL GEF   N L+
Sbjct: 254 ERLDNAIAVSLKPTAIERAVWAKSVAYSESGISLSIDGMFGAGDCVVPLIGEFNASNVLL 313

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +A+GID  L+LE    L  V GR E     ++  ++ VDYAHT ++LE  L  +R
Sbjct: 314 AMTTLLALGIDKQLLLETASSLKPVLGRMELFTAENK-AKVVVDYAHTPDALEKALNALR 372

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++  +FGCGGDRD GKRP+M  I   LAD  I+TDDNPRSE P +I  +++ G+ 
Sbjct: 373 VHCQGQLWAIFGCGGDRDTGKRPMMAAIGERLADRVILTDDNPRSESPAEIVKDMLVGMN 432

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                + + +R +A++ A+   +  D++++AGKGHE   ++ +     S D +   ++L
Sbjct: 433 QPDTAVVEHSRFDALQFALANSHADDIILLAGKGHEDYQVMAHETIHYS-DRESAIQLL 490


>gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia montanensis]
          Length = 479

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 158/477 (33%), Positives = 251/477 (52%), Gaps = 23/477 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++ K+  +S +S+ ++   +F AI G   DG+ FI  A+++GA  ++  +  ++     
Sbjct: 9   FQQHKVKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVLVITDNKKNIVIDK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V + +  L       Y K P+N++AVTGT+GKSSV S++ Q     G  +
Sbjct: 68  -------VIYVKDVQAALHEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTHSLLGKKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     P    L      K    L+  G+ ++  EASSHGLDQ RL
Sbjct: 121 ASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D    + V   
Sbjct: 181 REIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ  N L+A 
Sbjct: 241 LHNHNIKFITVGKKGDL-EITRINCSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAV 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 G     V++ L ++  V GR E +        I+VDYAHT ++LE  L  ++ I
Sbjct: 300 LSMHYTGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKALTELKNI 355

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                ++ VVFGCGG+RD+ KR +MG++A   AD  I+TDDNPR+EDP+ IRAEII GI 
Sbjct: 356 KLHDSKLSVVFGCGGNRDKAKRSLMGQMAAKRADTIIITDDNPRNEDPKLIRAEIISGIE 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D +++R+ 
Sbjct: 416 KADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEVVRKC 471


>gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 511

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 138/499 (27%), Positives = 250/499 (50%), Gaps = 22/499 (4%)

Query: 14  LINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++ + I P +   +++IN +S +S+ +Q G +F+ + G   DG  +  +AI  GAEA +
Sbjct: 9   LLDLVGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAAI 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
           + SA   +  S  I     +++ DN         S  + +    +  + VTGT+GK+++ 
Sbjct: 69  IGSAAKQKIGS--IDRERILVIEDNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGKTTIT 126

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ + ++ G  +   G        F++    TT     L K L+           +E 
Sbjct: 127 FLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFAILEV 186

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPAIIY 247
           SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+  +++ 
Sbjct: 187 SSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGISVLN 246

Query: 248 ADDAY----SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDF 302
            DD +    S ++ KR+     ++    ++   F ++       +          +    
Sbjct: 247 HDDLWISKLSSDLEKRSSLVSTKITKSEFKNDGFFYVTDKQFTESGSTCIFHTPKEKIKL 306

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-----R 357
             PL GEF + NA+ A  +   +      + + ++     PGR E +  ++         
Sbjct: 307 FVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNNDVSRSLPI 366

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA + +D   +T 
Sbjct: 367 VIIDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDRSKRPLMGSIAEEFSDHVFITS 426

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE+P++I  +I+ GI    +     +R +AI  +I+  NK+D++++AGKGHE   I
Sbjct: 427 DNPRSEEPQQIVNDILMGIEKREKITFDIDRFKAINESIKFANKEDIVLIAGKGHEDYQI 486

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       D  I +++L
Sbjct: 487 LNDKVIN-FDDRKIAQKLL 504


>gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
 gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
          Length = 522

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 159/474 (33%), Positives = 229/474 (48%), Gaps = 22/474 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR +  G  FVAI G   DGH FI  A+  GA  +V     +L   +      
Sbjct: 62  IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCE---ALPTRARERFPG 118

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V +TR  L+  A+ L+G   +   ++ VTGT+GK++VA  V  + +  G ++  +
Sbjct: 119 VVFARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVAYLVHHLLEALGETAGLL 178

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                          LTTP P+ L + L  +  +G T  ++E SSH LDQ R+ G+    
Sbjct: 179 STIEVRAGGETTAPALTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRVHGLDYEV 238

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FT L  DH+DYH T   Y  AK  LF+ L P ++ A+   DD     ++    +   R
Sbjct: 239 AIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGP-DATALYNTDDEAGPTMVA---DTEAR 294

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V+S G      I    + A  + Q+V +    +D      L G F   N   A G   A+
Sbjct: 295 VVSFGLDRDADIEATVLEARLDGQRVRLDGHERD----TQLAGRFNASNMAAAYGTGTAL 350

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-- 383
           G     V + L     VPGR E +     G  + +DYAHT ++LE +L+ +R  T  +  
Sbjct: 351 GHVPEAVADALADAPPVPGRVEPLRFE-DGTTVIIDYAHTPDALENVLRTVRDTTPAKAA 409

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           +  VFGCGGDRD GKRP MG+IA  LAD  IVT DNPR+E P  I  +I  G+       
Sbjct: 410 LWCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDIRDGVERPESMR 469

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +R EAI+ A +     DV+V+AGKGHET   +   + +   D ++ R   G
Sbjct: 470 WIVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGT-DTRPFDDREVARRYFG 522


>gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
 gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
          Length = 492

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 155/494 (31%), Positives = 242/494 (48%), Gaps = 25/494 (5%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            EL++QL+   +Q      + V+ DSR +Q G +F+A  G+  DG  +I  A+A+GA A+
Sbjct: 5   RELLDQLAAMGIQP-----SGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALARGAVAV 59

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +   +      S    +N P   V   R      A  +YG   E  +++A+TGT+GK+++
Sbjct: 60  LWQPSADFSWDSTLATANLP---VAALRPLAGPLAHAVYGHPSEGLSLIAITGTNGKTTI 116

Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  + Q   +       IG           +   TTP    L + L+   ++     ++E
Sbjct: 117 SQCIAQAYPK---PCAIIGTLGAGFPDSLIETGFTTPEATTLMRYLADFRARNAAACALE 173

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASS G+++ R++G ++    FTN  RDH+DYH T +AY  AK +LF    P+   AII  
Sbjct: 174 ASSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAYAEAKEKLFH--WPRLRTAIINL 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD +   +M+          ++G   +        + +      Q+  + +         
Sbjct: 232 DDEFGLNLMRETTAMRVLGYAIGEARRDFPALVRAENLVDTPFGQRFNLVLPNGRVAVDT 291

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G + + N L  A +    G+ +A V   L +L   PGR E +G N     + VDYAH
Sbjct: 292 TLVGRYNISNLLAVAAVLHDAGLAAADVAIRLSELTPPPGRMERLGGNGE-PLVVVDYAH 350

Query: 365 TSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           T ++LE  L  +R +    +GR+ VVFGCGGDRD+GKRP MG +A  LAD  +VT+DNPR
Sbjct: 351 TPDALENALTALRDVATTRAGRLSVVFGCGGDRDKGKRPQMGALAERLADRVLVTNDNPR 410

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           SE P  I  EI  G+     + +R  AIR A+     QDV+++AGKGHE    + +  + 
Sbjct: 411 SEAPHVIINEITSGMTRAEVEADRATAIRRAVLEAGDQDVILLAGKGHEPYQDMGS-VRL 469

Query: 482 MSVDCDIIREILGL 495
              D +     L L
Sbjct: 470 PFSDVEQAGAALAL 483


>gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
 gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
          Length = 501

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 151/481 (31%), Positives = 227/481 (47%), Gaps = 26/481 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR IQ G +F+A  G   DG  +I  AI +GA  +      +   F        P 
Sbjct: 26  LHADSRKIQPGDVFIACQGEYADGRNYIADAITRGASFVYWDDDGA---FQWQPEWRVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS--GLSSFQIG 148
             + +  +   + A++ YG       I+ VTGT+GK+S+  ++ Q         S   IG
Sbjct: 83  QGISDLSQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQWLAQAIDNLEQAPSCAIIG 142

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     Q    TTP P+ +   +     QG   +++E SSHGL Q+R++G+     
Sbjct: 143 TVGNGFFGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEVSSHGLAQYRVNGVPFHTA 202

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---- 263
            FTNL RDH+DYH +   Y  AK RLF         AII +DDA+   +           
Sbjct: 203 VFTNLTRDHLDYHGSMAEYGAAKERLF--YWQGLQNAIINSDDAFGAALAAELKQHSGSL 260

Query: 264 ------GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                   +  + G+ +   I +    A      ++++    +      L G F   N  
Sbjct: 261 KTEGCNEVKTYTYGFNEQADICITCFAANREGMSISLATPWGEGSAQTRLLGRFNAQNFA 320

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G   A G D    L  L ++    GR + +    +   + VDYAHT ++LE  L  +
Sbjct: 321 AALGALCAAGYDFQAALTALSRIRPATGRMDCIIQPDK-PLVVVDYAHTPDALEKALTTL 379

Query: 377 RTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           R I     R+  VFGCGGDRD+GKRP+MG++A  LAD A+VT DNPR+EDP+ I A+I+ 
Sbjct: 380 REIQQPESRLWCVFGCGGDRDRGKRPLMGEVAARLADKAVVTSDNPRTEDPQAIIADILP 439

Query: 435 GIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +P   + + +R  AI   I     QD++++AGKGHET   V  G K    D ++ ++ L
Sbjct: 440 AVPHPALVEADRKAAIEQTIAQAQAQDIVLIAGKGHETYQDV-QGVKHHFSDFEVAQDAL 498

Query: 494 G 494
           G
Sbjct: 499 G 499


>gi|239626579|ref|ZP_04669610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516725|gb|EEQ56591.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 515

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 153/524 (29%), Positives = 237/524 (45%), Gaps = 45/524 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D +     E I           + +++EV  DSR    G +FV + G + D H F+
Sbjct: 1   MVLRDWLKGLEYECIRG-------SLDTEVSEVVYDSRKAAPGAVFVCMAGTRVDSHRFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQ--------DFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           P  +  G   +V       +          +    S   +L   + R  L+L ++  +G 
Sbjct: 54  PDVLKAGVRVLVTERGIEEELKKAKEEGGLTEEDLSEVTVLQTGDGRHALALLSAARFGY 113

Query: 113 HPENILAVTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIY 169
               ++ +  T  K        ++ I + +G     IG T T I         TTP    
Sbjct: 114 PATKMVTIGVTGTKGKTTTTHMIKTILEAAGKKVGMIGTTGTVIGDKVTPTMNTTPESWQ 173

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYF 227
           L +A + ++  G  ++ +E SS G+  HR+DGI    G FTN+  DHI  D H     Y 
Sbjct: 174 LHQAFAQMADSGCQYMIMEVSSQGIKMHRVDGITFDYGIFTNISPDHIGPDEHADFAEYL 233

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----------GYQGKFI 277
             K RL    L      ++  +D++ ++++K A +      SV          G  G   
Sbjct: 234 YCKSRL----LNMCRIGLVNRNDSHFEDIIKDA-DCELYTYSVTEERGGLHGSGESGADF 288

Query: 278 HLKKVCAIHNKQQV--TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
               V  +     V     V+G+ + D    +PG F V NAL A  +C  +G+    V  
Sbjct: 289 TASDVRYVSQPDFVGTEFDVKGRYEMDVRLGIPGLFNVDNALAAVSVCSFLGLKKESVSR 348

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            LE +  V GR E V T++R   + VDYAH + S+E +L  +R     R++VVFGCGG+R
Sbjct: 349 ALEHIR-VNGRMEIVHTSAR-CTVLVDYAHNAVSMESLLTTLRQYHPKRLVVVFGCGGNR 406

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIR 450
            + +R  MG+I   LAD++IVT DN R E  E I A+I   I      F+E  +R EAI 
Sbjct: 407 SKDRRYTMGEIGGRLADLSIVTADNSRYEKVEDIIADIRGSIEKTGGAFLEIPDRREAIE 466

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +I      D++ V GKGHE    + NG +   +D ++I E++G
Sbjct: 467 YSISHAMPGDMIAVIGKGHEDYQEI-NGVRHHFLDREVIEEVVG 509


>gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
 gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
          Length = 498

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 249/502 (49%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++    PE++   +  P    E  I  ++ +S+ +    +FVAI G K DGH +I
Sbjct: 6   MKLNCILED--PEIVEVRNNNP----EIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI++GA  ++              + +   + V N R  L   +SR YG   E  +I 
Sbjct: 60  GDAISRGAILVIYEHDLDE------YQDDIMYVKVKNARHMLGTMSSRFYGHPSEALSIT 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSY 176
            VTGT+GK+++   ++ I Q+ G     IG  +         +   TTP  + + + +S 
Sbjct: 114 GVTGTNGKTTITHMLKSIFQKDGRKCGLIGTINNQIGDEIIDNAGRTTPDSLEVQEIISE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  ++ +E SSH LD  R++G+    G F+NL +DH+DYH+T + YF AK +LF  
Sbjct: 174 MVEAGCQNLVMEVSSHALDLDRVNGVAFDYGIFSNLTQDHLDYHKTFENYFEAKAKLFTY 233

Query: 237 LLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
                   II  DD + K++  R A   G  V S G   +   + + +       + T+ 
Sbjct: 234 ---TSKANIINCDDVWGKKLYDRCAQKKGVAVYSYGLNPECDFYARDMKYSIEGTRYTLV 290

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +  + +    +PGE  VYN++ A    +  GI   ++ E L  +  V GR E +  ++ 
Sbjct: 291 TKDGEEEIFISIPGEVMVYNSMAAIINALLEGISIEVIKEALASMSGVEGRMERLDLDTE 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I +DYAH+ +SLE +LK+++T+  G++ +VFGC GDRD+ KRPIMG+IA + AD  I
Sbjct: 351 -FDIIIDYAHSPDSLERLLKSVKTMYDGKVYLVFGCNGDRDKEKRPIMGRIAGEFADHVI 409

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           VT DNP SEDP+ I   +   +    +       R +AI  A  +    DVLV+AGKGHE
Sbjct: 410 VTSDNPASEDPQSIIDTVAAAVAEKTDACETVLRRWDAIYYAATLPKAGDVLVLAGKGHE 469

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
                   E     + +   E 
Sbjct: 470 K-QETMKDENLYYNEWETAEEA 490


>gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
 gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
          Length = 505

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 165/503 (32%), Positives = 246/503 (48%), Gaps = 19/503 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+          +   P++  E +I+ ++ DSR + AG +F A+ G+  DG  FI
Sbjct: 8   MKLGALLSPWLA-----IDKLPLELTESQIDAITLDSREVTAGSLFTAVNGHTVDGRRFI 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI  GA AI+  +     +    ++    I+ + +    LS  A R +    +   + 
Sbjct: 63  DTAIKAGASAIIAEADGIANEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALY 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++  + Q     G  +  +G T   +    +    TT S I + + L+ L
Sbjct: 123 AVTGTNGKTTISQLLAQWANLVGYKAGVMGTTGNGLLVDLKPAANTTGSAIEIQQTLAQL 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  +   A  FTNL RDH+DYH   Q Y +AK  LF E 
Sbjct: 183 VEQGADFAAMEVSSHGLVQGRIRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTE- 241

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTI 293
             +   AII ADDA     +    NA    +     V + G  +    V        +  
Sbjct: 242 -HQSGIAIINADDAVGASWLIDIPNAVAVAIDPQAVVNHTGLKLWATDVQFSTQGVTIEF 300

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F  PL G F   N L+A    +A     A +LE   KL  V GR E V  ++
Sbjct: 301 DSSWGQGKFTAPLVGSFNATNLLLALATLLATNHPMADLLEKAPKLQAVIGRME-VFQDT 359

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M ++A  LAD  
Sbjct: 360 DKAMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQI 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+TDDNPRSEDP+ I  +++ G+      I   +R  A R A+   + QD+++VAGKGHE
Sbjct: 420 ILTDDNPRSEDPKDIVDDMLAGLISPESAIIIHDRETACRHALTHASYQDIILVAGKGHE 479

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ +     S D + +  +L
Sbjct: 480 DYQILADRTIHYS-DRETVAALL 501


>gi|225872739|ref|YP_002754196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793951|gb|ACO34041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 502

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 150/495 (30%), Positives = 248/495 (50%), Gaps = 17/495 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F + +  +        + ++  V  DSR +  G +FVA+ G   DG+ +I  AI +GA A
Sbjct: 3   FSQALAGVDTTARSGPDPELTGVEYDSRRVTPGALFVAMRGETVDGNRYIGAAIEKGAGA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+  SA ++   + ++R++  I  V + R+ ++L A+  +G HPE  LAV+G +G +   
Sbjct: 63  ILTDSAEAMA--TWSLRTDVAIAQVPHGRQAMALVAANFFG-HPERQLAVSGVTGTNGKT 119

Query: 131 S---FVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ + Q +   +  +G     ++     +  TTP    L          GVT   
Sbjct: 120 TTTFLLESLLQHAQRKTALVGTIEYHLAGQVLPSPHTTPESRDLLALFRQGVDAGVTEAV 179

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAI 245
           +E SSH L Q R+ GI      FTNL RDH+D+H + Q YF AK  LF+  L +    ++
Sbjct: 180 MEVSSHALAQGRVYGIPYDVAIFTNLTRDHLDFHGSMQQYFAAKRMLFDASLGQPPRVSV 239

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D +  E+   A   G  + S G+       + V       +               
Sbjct: 240 LNLEDPHGAELALTAREHGSEIYSYGFNTGEFRAEDVQLSGGGMRFHWHTPFGHAPVTTR 299

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   VYN L A+   +A G+    V+E +  LH VPGRF+ +    +   + VDYAHT
Sbjct: 300 LIGRVNVYNLLAASAGALARGLAFDQVVESVAHLHSVPGRFQTID-EGQPFTVVVDYAHT 358

Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++L  ++   R +     GR+I +FGCGGDRD+ KRP+MG+ A + +D+ ++T DNPRS
Sbjct: 359 DDALRNLIALARDLVHKHKGRVITLFGCGGDRDRTKRPLMGQAAAEGSDVVVLTSDNPRS 418

Query: 423 EDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           EDPE I A+++ G+      ++ + +R   IR A+E+    D++++AGKGHE    + +G
Sbjct: 419 EDPEAILADVLPGLTVPRTWYMLEPDRARGIRMALEIAQPGDIVLLAGKGHEKTQTLRHG 478

Query: 479 EKKMSVDCDIIREIL 493
                 D  +   +L
Sbjct: 479 TIP-FDDVAVAAAVL 492


>gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName:
           Full=UDP-MurNAc-tripeptide synthetase 2
 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 492

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 149/492 (30%), Positives = 240/492 (48%), Gaps = 24/492 (4%)

Query: 13  ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           ELI+ L I     +    I+ +S +SR +    +F+ I G   DGH F+ +A+  GA  I
Sbjct: 5   ELISSLKIKQQIGKLPNTISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSV 129
           V     +L    AT+      ++V +T K ++  A+  Y     N+     TGT+GK++V
Sbjct: 65  VAEREVNLDTNKATL------IIVPDTNKAIATLAATFYKHPSHNLTIYGVTGTNGKTTV 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL--AKALSYLSSQGVTHVSV 187
            + +  +   + LS+  IG      +    +     +   L     L    +QGVTHV++
Sbjct: 119 TTIINHLLTDNELSTALIGTNGFQINKDIYSSSNNTTSDVLTNQHMLYEAKNQGVTHVAM 178

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPA 244
           E SSHGL+Q RL GI     +FTNL  +H+DYH + + Y   K++LF  L     K+  A
Sbjct: 179 EVSSHGLEQGRLWGIDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSSLAIQPNKQKIA 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DD + +   KR      +++S G Y+        +    ++    +      F   
Sbjct: 239 VLNRDDNWYEYFQKR---TPVQIVSYGIYEQADFRATAIKYYKDRTSFELLTPEGSFQVQ 295

Query: 304 FPLPGEFQVYNALVAAG-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             L GEF VYN L A   + +   I    +++ +E     PGR E + ++     IY+DY
Sbjct: 296 TKLMGEFNVYNVLAAIASVYVKESIPLTDLVKSIEGTPTPPGRMEKLESSGN-RHIYIDY 354

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++L   + ++      ++IVV G GGDRD+  RP++ K A  +AD  I+T ++PR 
Sbjct: 355 AHTPDALTKAINSLLPFKQNKLIVVVGTGGDRDKSIRPLLAK-AASVADYVILTINDPRH 413

Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           EDP  I  ++ +G+    +    NR EAIR AI   +  D++++AGKG E   I+ N +K
Sbjct: 414 EDPNNILQDLENGMLHHQYTCLENRKEAIREAINYSSPNDIILIAGKGKEPYQIIKN-KK 472

Query: 481 KMSVDCDIIREI 492
               D  I  E 
Sbjct: 473 VAHNDATIALEC 484


>gi|253580142|ref|ZP_04857409.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848661|gb|EES76624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 491

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 141/506 (27%), Positives = 239/506 (47%), Gaps = 35/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+ K        L    +Q   ++++  V  DSR ++ G +F+ I G   DGH F
Sbjct: 7   MKLISLLEK--------LEYTCLQGSTDQEVKNVVYDSRKVEEGSLFICIRGAVVDGHKF 58

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +P  +A+GA+ ++V  A            +  +++V +TR  ++  ++  +G   E +  
Sbjct: 59  VPDVVAKGAKVLIVEEAVEA-------PEDVTVILVKDTRYAMAFISAAYFGYPAEKLKT 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT GK++    V+ I + +G     IG   + I       + TTP    + +    
Sbjct: 112 IGITGTKGKTTTTYMVKSILENAGYKVGLIGTIEAIIGDKVIPAKNTTPESYVIQEYFHE 171

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           ++  G   V +E SS GL  HR  G     G FTN+  DHI    H+    Y   K  L 
Sbjct: 172 MAEAGCDCVVMEVSSQGLMLHRTQGFVFDFGIFTNIEPDHIGPNEHKDFDDYLRCKSLL- 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTI 293
              L +    I+  DD + +++++  H           +                  ++ 
Sbjct: 231 ---LKQCKVGIVNRDDEHFEKIIE-GHTCSLETYGFSPEADLRAEDAKLVGGKGYLGISY 286

Query: 294 SVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++G  DF     +PG+F +YN+L A  +C    +    +L+ L K+  V GR E V   
Sbjct: 287 HLKGLLDFHVEIDIPGKFSIYNSLTAIAICRHFKVSEENILKAL-KVAKVKGRIEMVKV- 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           S    + +DYAH + +LE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+
Sbjct: 345 SDDFTLMIDYAHNAMALESLLTTLKEYHPHRLVCLFGCGGNRSKLRRYEMGEVSGKLADL 404

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I+T DNPR E+P+ I  +I  G+      ++E  +R EAI  AI      D++V+AGKG
Sbjct: 405 TIITSDNPRDEEPQAIIDDIKIGMAKTDGKYVEIPDRKEAIAYAIHHGEPGDIIVLAGKG 464

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE    +  G+K    +  +I +IL 
Sbjct: 465 HEDYQEIK-GKKYPMDERVLIADILA 489


>gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
          Length = 479

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 158/477 (33%), Positives = 249/477 (52%), Gaps = 23/477 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  ++     
Sbjct: 9   FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q     G  +
Sbjct: 68  -------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     P    L      K    L+  G+ ++  EASSHGLDQ RL
Sbjct: 121 ASIGTIGVEIFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D    + V   
Sbjct: 181 REIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ  N L+A 
Sbjct: 241 LHNHNIKFITVGTKGDL-EITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAV 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                IG     V++ L ++  V GR E +        I+VDYAHT ++LE  L  ++ I
Sbjct: 300 LSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKALTELKNI 355

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRA II GI 
Sbjct: 356 KLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAAIISGIE 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D +++R+ 
Sbjct: 416 KADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEVVRKC 471


>gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS195]
 gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS195]
 gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS678]
          Length = 499

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 149/508 (29%), Positives = 235/508 (46%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+                    +  ++++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWL-----------HYAGAQSFSDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDF----SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
            +A+   A A++V +  + Q      S        I V   +R+  ++ A R    H   
Sbjct: 51  EKALDLSAAAVLVHTDDADQHGKVLHSDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSA 110

Query: 116 ----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYL 170
                ++ +TGT+GK+S +  + Q+    G  +  +G     +     D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHN 287
             LF          ++  DDA     +    +   ++      G+Q    + K       
Sbjct: 231 QSLFR--FSTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQ 288

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+     +     PL G F + N L A       G D   + E ++ L  V GR E
Sbjct: 289 GVSATLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRME 348

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              T +    + VDYAHT +++E  L  +R    G +  VFGCGGDRD+GKRP+MG+ A 
Sbjct: 349 RFTT-ANNITLVVDYAHTPDAIEQALNALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAE 407

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++
Sbjct: 408 QYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILL 467

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AGKGHET      G +    +  + R++
Sbjct: 468 AGKGHETYQE-AAGVRHDYDERALARQL 494


>gi|316933181|ref|YP_004108163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
 gi|315600895|gb|ADU43430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
          Length = 485

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 209/488 (42%), Positives = 279/488 (57%), Gaps = 20/488 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   +        +       +R I  ++ DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDLFSAE--------TEIAASAADRPIGGLAVDSRAVRPGDLFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    AI   +     +         P + + N R  L+  A+R Y + PE I AV
Sbjct: 53  A-------AAIAAGAVAVAGEHPPAGDLAVPFVQLSNPRLALAQAAARFYPRQPEVIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G +S  IG    ++ + +    LTTP PI L ++L  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAG 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T   Y NAK+RLF  L+ 
Sbjct: 166 EGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRHLVQ 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296
               A+I AD   S EV++ A   G R++++G  G     I L         Q +T++  
Sbjct: 226 DGGAAVIAADHDCSAEVIEAAGARGLRLITIGRNGDPGEGIALIDAAIDGFAQILTVAHA 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+ +    PL GEFQ+ NALVAAGL I  G DSA     LE L   PGR + VG   RG 
Sbjct: 286 GRRYSIKLPLVGEFQIENALVAAGLVIGTGGDSAASFAALEHLEGAPGRLDLVGA-HRGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD  IVT
Sbjct: 345 PVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAEHADTVIVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRA I+   PG    G+R EAIRTAI  L   D LV+AGKGHET  IV 
Sbjct: 405 DDNPRSEDPAAIRAAILAAAPGARAIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464

Query: 477 NGEKKMSV 484
           +     S 
Sbjct: 465 DRVLPFSD 472


>gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
 gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
          Length = 483

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 156/472 (33%), Positives = 246/472 (52%), Gaps = 21/472 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +E +   +  DSR I+ G IFVA+ G   DGH +I QA+  GA+ I+VS           
Sbjct: 18  KEEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKKIEAVFP--- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSS 144
                  + + + R+ L + AS  Y   P+  L + G +G +   +    I    G   +
Sbjct: 75  ----VKYIWIKDLRRKLGVLASNFY-NWPQKKLKIIGITGTNGKTTTTYLIESILGSDKT 129

Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            +IG     I     +   TTP  + + K       +G+ ++ +E SSH L   R+D ++
Sbjct: 130 ARIGTVEYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEVSSHALALGRVDMLE 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHN 262
                FTNL  DH+D+H+T + YF AK +LF  +    E   +I  DD Y K +      
Sbjct: 190 FDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYGKRLSSEFGG 249

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                +S G   +     K+   H + Q+V I+++         + G + VYN L A  +
Sbjct: 250 -----ISYGMHNEGRVRGKILEFHGDGQEVEINIDNFSTKIKLAILGRYNVYNVLGALSI 304

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +GI+  ++L+ +++L   PGR+E V    +   + VDY+HT ++LE ILK+I  +  
Sbjct: 305 ALLLGIERDIILDKIKELKGAPGRYELVNC-GQDFTVIVDYSHTGDALENILKSINELKK 363

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--F 439
           G+II VFGCGGDRD  KR +MG+IA  L+DIAIVT DNPR+EDP KI  +++ G+ G   
Sbjct: 364 GKIITVFGCGGDRDPNKRSVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEGMKGKNH 423

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           I + +R  AI  A+++   +D++++AGKGHET  I+   +K    D +I R 
Sbjct: 424 IVEEDRDIAISKAVKLAEAKDIILIAGKGHETYQILGR-KKIHFDDREIARR 474


>gi|331082373|ref|ZP_08331499.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400859|gb|EGG80460.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 497

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 137/497 (27%), Positives = 228/497 (45%), Gaps = 27/497 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L+ +L    +Q   +++I +++ DSR  + G +F  I G   DGH +  +   +G
Sbjct: 9   KKLVDLLEKLEYQCLQGTMDKEITDITFDSRKAEKGCLFFCIKGAVSDGHTYAKEVAEKG 68

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++V            +     ++ V+N+R  ++  ++  +G   E +  +  T  K 
Sbjct: 69  AAVLIVQDKVE-------VPEEVTVIQVENSRYAMACISAAWFGHPAEKLKTIGITGTKG 121

Query: 128 SVA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
                  V+ I + +G  +  IG   TI       +  TTP    + K  + +   G   
Sbjct: 122 KTTTTYLVKSILENAGYKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCDS 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           V +E SS GL  HR  G +   G FTN+  DHI    H+    Y   K  LF++      
Sbjct: 182 VVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGPNEHKDFADYLRCKALLFKQC----K 237

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEG-KDF 300
             I  AD  +  E+++  H           +                  +   V+G  +F
Sbjct: 238 VGIFNADAEHLDEILE-GHTCEVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGLMNF 296

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                LPG F VYN+L A  +C   G+    + + L++   V GR E V  +     + +
Sbjct: 297 PVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAK-VKGRIEMVKVSDE-FTLMI 354

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNP
Sbjct: 355 DYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTIITSDNP 414

Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R E+P++I  +I  GI      ++E  +R EAI  AI      D++V+AGKGHE    + 
Sbjct: 415 RDEEPQEIIDDIKIGIGKTSGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKGHEDYQEIK 474

Query: 477 NGEKKMSVDCDIIREIL 493
            G+K    +  +I+EIL
Sbjct: 475 -GKKYPMDERVLIQEIL 490


>gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
 gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
          Length = 487

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 260/506 (51%), Gaps = 38/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     +L+   +       +  +  +++DSR +++G++FVA+ G + DGH  +
Sbjct: 1   MKLAALLAGHPHDLLQGDA-------DTDVTGIATDSRQVRSGFLFVAVPGRRVDGHAHL 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA+ QGA A +VS+       +  + S   I  V++T    SL ASRL+G+      ++
Sbjct: 54  EQAVEQGAVAALVST------TAHPLPSALTIARVESTPVAASLAASRLHGEPGRRMRVV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------TPSPIYLA 171
           ++TGT+GK+S A+ ++ +      S+  +G   T         +        TP  + L 
Sbjct: 108 SITGTNGKTSTAAMLESVIAAL--STAPVGVIGTGGPRVDGIPVPLKTTTPTTPQAVELQ 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L Y++ QG   V +EASS  L QHRLD      G FTNL  DH+D H T  AY  AK+
Sbjct: 166 PILRYMADQGAGTVVMEASSLALWQHRLDHAFTDIGVFTNLSPDHLDDHGTMDAYKAAKL 225

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQ 290
            LF  +    S A++  DD  S+E+++R      R  + G         +         +
Sbjct: 226 LLFSGM---SSDAVVNTDDPVSQEILER----MPRATTFGMDKTADFTARAFEVSATGTR 278

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +  +G+++    P+PG F V NAL A  +C  +G ++   L  LE L  +PGR E + 
Sbjct: 279 FLLVHDGQEYPAHLPIPGRFNVANALAAVAVCHRLGYETKAALHALETLPQIPGRMETL- 337

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             + G  I VDYAH+++SLE  L+ +R ++SGR++ VFGCGGDRD  KR  MG +A  L+
Sbjct: 338 RRADGTSIVVDYAHSADSLEKTLRTLREVSSGRLLTVFGCGGDRDASKRIPMGSLAGHLS 397

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D  ++T DNPR+EDPE I   +  G+      +    +R  AI  A+ +    D ++VAG
Sbjct: 398 DHVVITSDNPRTEDPETIINAVERGVRTTDTPYDRITDRRAAIARALSLAEPGDTVLVAG 457

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KG ET  ++         D  ++RE+
Sbjct: 458 KGAETYQLIGEAALPFE-DMAVVREL 482


>gi|323692067|ref|ZP_08106314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
 gi|323503867|gb|EGB19682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
          Length = 487

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 239/504 (47%), Gaps = 35/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++ + +   EL+           + ++++V  DSR   AG +FV + G   D H FI
Sbjct: 1   MKLREWLKEMEYELL-------QGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  I +GA+ +V   A        T+     +L V N R  LSL ++  +G +P   +  
Sbjct: 54  PDVIQKGAKVLVTEEAV-------TVPEEITVLRVGNGRNALSLLSAARFG-YPARKMTT 105

Query: 121 TGT---SGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
            G     GK++    ++ I + +G  +  IG     I S       TTP    L +  + 
Sbjct: 106 IGVTGTKGKTTTTYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +  QG  ++ +E SS     HR+DGI      F N+  DHI    H + + Y   K  L 
Sbjct: 166 MVEQGCRYMVMEVSSQSYLMHRVDGIFFDYSIFLNISNDHIGPNEHASFEEYLYYKKLL- 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTI 293
              L      ++  DD + +E+++ A  A  +  S+ +   F     K    H+   +  
Sbjct: 225 ---LQNSRVCLVNRDDGHFREIIEGAK-AEIKTFSMEHSADFRAADVKYIREHDFVGLDF 280

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +EG  +      +PG F VYNA+ AAG+C  +G+    V   LE +  V GR E V  +
Sbjct: 281 KMEGDYESRLRVNVPGLFNVYNAMAAAGVCSCLGLSKERVAHALEHMQ-VDGRMEIVYKS 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           ++   + VDYAH + S+E +L  +R     R++VVFGCGG+R + +R  MG+I   LAD+
Sbjct: 340 AK-CTVIVDYAHNAVSMESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADL 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +I+T DN R E    I A+I  G+      FIE  +R EAI  ++      D++ + GKG
Sbjct: 399 SIITADNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQDGDIIAIIGKG 458

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           HE    +  G +   +D  +++E 
Sbjct: 459 HEDYQEIE-GVRHPFLDRTVVQEA 481


>gi|260588058|ref|ZP_05853971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
 gi|260541585|gb|EEX22154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
          Length = 497

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 140/497 (28%), Positives = 233/497 (46%), Gaps = 27/497 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L+ +L    +Q   +++I  ++ DSR  + G +F  I G   DGH +      +G
Sbjct: 9   KKLADLLEKLEYQCLQGTMDKEITNITFDSRKAEKGCLFFCIKGAVSDGHAYAKDVAEKG 68

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A  ++V            +     ++ V+N+R  ++  ++  +G   E +  + +TGT G
Sbjct: 69  AAVLIVQDKVE-------VPEEVTVIQVENSRYAMACISAAWFGHPAEKLKTIGITGTKG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    V+ I + +G  +  IG   T I      +  TTP    + K  + +   G   
Sbjct: 122 KTTTTYLVKSILENAGHKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCDS 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           V +E SS GL  HR  G +   G FTN+  DHI    H+    Y + K  LF++      
Sbjct: 182 VVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGPNEHKDFADYLHCKALLFKQC----K 237

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEG-KDF 300
             I  AD  +  E+++  H           +                  +   V+G  +F
Sbjct: 238 VGIFNADADHLDEILE-GHTCQVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGLMNF 296

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                LPG F VYN+L A  +C   G+    + + L++   V GR E V  +     + +
Sbjct: 297 PVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAK-VKGRIEMVKVSDE-FTLMI 354

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNP
Sbjct: 355 DYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTIITSDNP 414

Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R E+P++I  +I  GI      ++E  +R EAI  AI      D++V+AGKGHE    + 
Sbjct: 415 RDEEPQEIIDDIKIGIGKTNGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKGHEDYQEIK 474

Query: 477 NGEKKMSVDCDIIREIL 493
            G+K    +  +I+EIL
Sbjct: 475 -GKKYPMDERVLIQEIL 490


>gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 516

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 155/499 (31%), Positives = 255/499 (51%), Gaps = 30/499 (6%)

Query: 14  LINQLSIFPMQWRERK------INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           L+  ++ + +  ++ +      +  +++DSR + +G +FVAI G + DG  F+P+A+  G
Sbjct: 21  LLEAVASWHLPQQDFEAGTSPSVEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAG 80

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A+ IV     S ++ +   + +   + V +  + L+  A  L+    +   ++ VTGT+G
Sbjct: 81  AKYIVGEHVLSQEEKALFEQVDASYIAVSSAHEALAALAQALWHYPSKHLRLVGVTGTNG 140

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+S A+ + ++ +R G  S  IG     I +       TTP PI LA+ L  +   G +H
Sbjct: 141 KTSTATMLHRLFERLGYKSGLIGTVENRIGNEIIPATHTTPDPIALAQLLYRMQQAGCSH 200

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH   Q R+  ++ + G FTNL RDH+DYH T Q Y  AK   F++L P  + A
Sbjct: 201 VFMEVSSHAAHQRRIGSLEFVGGLFTNLTRDHLDYHGTMQEYIRAKKMFFDQLSP-NAFA 259

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++ ADD     ++    N   +  + G +       K V       ++ ++    D    
Sbjct: 260 LVNADDRNGSVML---QNTSAKKYTYGLKSFADFKAKVVEGDFRGTELLLN----DRSVW 312

Query: 304 FPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            PL G F  YN  +       +   ++  ++L+ L  +    GRFE +    R G   VD
Sbjct: 313 IPLVGAFNAYNITLVYAAARLLLPDLEQDVLLQALSTIETAEGRFEVISEGGRIG--IVD 370

Query: 362 YAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAHT ++L  +L+ IR +    GR+I V G GG+RD+GKRPIM + A   +D+ I+T DN
Sbjct: 371 YAHTPDALIKVLETIRPLVPQGGRVITVVGAGGNRDRGKRPIMAQEAFRRSDLLILTSDN 430

Query: 420 PRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           PR EDP+ I  E++ G+        +   +R  AI TA  +   +DV++VAGKGHET   
Sbjct: 431 PRDEDPQAIINEMMAGLTPEEQAQCLTNVDRRSAIATACRLATPRDVILVAGKGHETYQE 490

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +G +    D + +R  L
Sbjct: 491 I-HGVRHHFDDREELRLAL 508


>gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
          Length = 488

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 153/467 (32%), Positives = 234/467 (50%), Gaps = 16/467 (3%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR ++ G +FVA+ G+   G  F PQA+ +G      ++  +         S    +V
Sbjct: 26  IDSRQVEPGDVFVALPGSTVHGSDFAPQALKRG-----AAAVVAAPGTLPATLSQQNCVV 80

Query: 95  VDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            D+ R+ L   A   +G  +    ++ VTGT+GK++V   ++   QR G     IG  + 
Sbjct: 81  HDDPREALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGRRVGVIGTIAN 140

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 +   LTTP    L   LS +++ GV  V +E SSH L Q R  G++  A   TN
Sbjct: 141 RWPGHEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQRRTAGLRFSAAVLTN 200

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           + +DH+DYH+  ++YF AK  LF    L +    +I ADD Y + +      A    L  
Sbjct: 201 VSQDHLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWGYSLHS 260

Query: 271 GYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 + ++   A  +++ + +S   +G+ +    PL G     N + A    +A+G  
Sbjct: 261 EKAQDPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGRHNGANLMAAQATLLALGFG 320

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A     L     VPGR E V  N+ G  I+VDYAHT ++LE +L+ +  +   R++VVF
Sbjct: 321 PADA-AVLSDAPPVPGRLERV-ENAAGLDIFVDYAHTPDALENVLQAMTALDGNRLLVVF 378

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445
           GCGGDRD+ KR  MG+     AD+AI+T DNPR EDPE I A++  G+   P  +E+ +R
Sbjct: 379 GCGGDRDRTKRVPMGQAVARYADVAILTSDNPRHEDPEAIMADVRPGLADCPRVVEESDR 438

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             AI  A++ +   D+LVV GKGHET   +     + S    I  +I
Sbjct: 439 KAAIALALQEMVPGDILVVTGKGHETYQDIGGVRVEFSDIRAICEQI 485


>gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 485

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 153/471 (32%), Positives = 241/471 (51%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IF+A  G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  DRKYDGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             N   ++V++ R  L   AS  Y + P+  L + G +G +   S    I +  G     
Sbjct: 73  --NVSYVLVEDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPIT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     I     +   TTP  + L K       + + +V +E SSH L+  R++ +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHITMENYFQAKRKLFLKLKDINN-SVINIDDKYGKRLYDEFIIDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +    +   +    + I  + +     F L G+F +YN L A G+ + 
Sbjct: 249 PEIISYGIDGGDLEGDYLDDGY----IDIKYKNQIEKVKFALLGDFNLYNTLGAIGIVLK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +G  
Sbjct: 305 IGISMEEILKRVSTIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARNIKNGNR 363

Query: 385 IV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           I+ +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I  ++  G      + 
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFDDVKKGFIKSDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI +  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINIAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|169794475|ref|YP_001712268.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213158953|ref|YP_002320951.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
 gi|301345412|ref|ZP_07226153.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB056]
 gi|301510058|ref|ZP_07235295.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB058]
 gi|301596006|ref|ZP_07241014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB059]
 gi|169147402|emb|CAM85263.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213058113|gb|ACJ43015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
          Length = 499

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 153/487 (31%), Positives = 237/487 (48%), Gaps = 34/487 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           QW ++  +  S DSR ++ G IF+A+       K     F   A+A GA A++  +   +
Sbjct: 16  QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQQ 135
            +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  + +
Sbjct: 74  AN----------EWVCSDVRQRMGDWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          +G T   I      +  TT   + L  AL   + QG T  S+EASSHGL
Sbjct: 124 LISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA++ 
Sbjct: 184 EQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDDAHAD 241

Query: 255 EVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++K A N   +      S+       ++  +          +  +   F    PL G F
Sbjct: 242 LMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT ++L 
Sbjct: 302 NVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDALI 359

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 431 EIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +    D 
Sbjct: 420 DMKQGINFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDV 478

Query: 487 DIIREIL 493
             +R  +
Sbjct: 479 VEVRSAI 485


>gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 491

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 160/508 (31%), Positives = 244/508 (48%), Gaps = 32/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DLI        +  ++     R      V+ D+  +  G +F A+ G+   G   +
Sbjct: 1   MKLSDLIAGQ-----DHHALRGTPDRTNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+A+GA A++V               +  +L V + RK  ++ ASR +G+     +++
Sbjct: 56  APAVARGAVAVLVDEQAPTL---PAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLI 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-------SPIYLA 171
           A+TGT+GK+SV+   + + + +     ++G   T  S   D  +  P           L 
Sbjct: 113 AITGTNGKTSVSYMTESVLRLA--ERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQ 170

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK+
Sbjct: 171 YLLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKL 230

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQ 290
           RLF+ L      A++ ADD     + K    A   V +    G        +    +  +
Sbjct: 231 RLFQGL---CRRAVVNADDPVGAGIRKLMPGA---VTTYALDGDADYRASDLAVDASGSR 284

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+  +G+ +    P PG F V NAL     C  +G   A +++ LE++  +PGRFE + 
Sbjct: 285 FTLHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQ 344

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   +
Sbjct: 345 IPG-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTHS 403

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      DV+++AG
Sbjct: 404 DLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALGEAGPDDVVLIAG 463

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG E    V  GE     D   +RE++G
Sbjct: 464 KGSEPHQSVR-GELLPFSDMATVRELIG 490


>gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
 gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
          Length = 500

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 146/509 (28%), Positives = 235/509 (46%), Gaps = 32/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F           +   ++  NE++ DSR I+ G +F+A+ G + DG  FI
Sbjct: 2   MLLRDLLAPWF-----------IYSGDQSFNELTLDSRAIRRGDVFLALPGYRVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYG------ 111
            +A+  GA  ++V +  + Q     +  N      +      + +S  A++ Y       
Sbjct: 51  DKALDLGAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFA 110

Query: 112 -KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIY 169
                 I+ +TGT+GK+S +  + Q+       +  +G     +     D+  TT   I 
Sbjct: 111 VTPSLGIIGITGTNGKTSTSQLIAQLVTSLRRKAAVMGTLGNGLWGELVDSGNTTADAIT 170

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  A
Sbjct: 171 LMRQLHEFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYATA 230

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIH 286
           K  LF          ++  DD      +    +   ++      G+Q    + K      
Sbjct: 231 KQSLFR--FSTLGHGLLNLDDPVGASWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDD 288

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                T+     +     PL G F + N L A       G D   + E ++ L  V GR 
Sbjct: 289 QGVSTTLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRM 348

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E   T      + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A
Sbjct: 349 ERFTTADN-ITLVVDYAHTPDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAA 407

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              AD  +VT DN RSEDP +I ++II G+      + + +RI AI+  + +    D+++
Sbjct: 408 EQYADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLIL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +AGKGHET      G +    +  + R++
Sbjct: 468 LAGKGHETYQE-AAGVRHNYDERALARQL 495


>gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 488

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 158/470 (33%), Positives = 233/470 (49%), Gaps = 23/470 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR I+ G +F A+ G   DG  FI +A   GA  +V                + P++ 
Sbjct: 23  LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKGD-------IGPCSVPVIE 75

Query: 95  VDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           +DN  + L   A+  YG     ++  AVTGT+GK++ A+++  +  R G     IG    
Sbjct: 76  IDNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGC 135

Query: 152 TISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           T++     +  +TTP P+ L    + L S+G    ++EASS GL+Q RLDG ++    FT
Sbjct: 136 TLNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFT 195

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL RDH+DYH T + Y  AK  LF    P  + A+I      ++++MK A  AG  +L+V
Sbjct: 196 NLTRDHLDYHGTMENYLRAKEILFR--WPTVASAVINQSGEPAQQIMKTAEGAGKAILTV 253

Query: 271 ---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G Q  ++  + +       +  +  +G  F       G F V N L   G  I++G 
Sbjct: 254 SAKGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGF 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRI 384
           +   VL+   KL    GR + V  +  G    VDY+HT +++   +K +  +     GRI
Sbjct: 314 EIETVLKEAAKLMPPAGRMQIV-RDDHGPIFAVDYSHTPDAVTQAIKALEGLAEARGGRI 372

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKG 443
            +V G GGDRD GKRP+MG+ A   AD  ++T DNPRSED ++I  +I  G         
Sbjct: 373 WIVVGAGGDRDHGKRPLMGQAACA-ADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE 431

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R +AI  A E     DV++VAGKGHE    V  G K    D +  RE L
Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKGHEDYQEVK-GVKHHFSDVEETREAL 480


>gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris]
          Length = 495

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 161/487 (33%), Positives = 230/487 (47%), Gaps = 16/487 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL       R+ +++ +  DSR ++ G  FVAI G    G  F  QA+A GA AI+  
Sbjct: 7   LSQLLPDVALARDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAILFE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                    A +      + V   R  L + A   +G   +   ++ VTGT+GK+S    
Sbjct: 67  PPA-----PADLPVPADAIAVPGLRARLGVLADHFHGAPSQAMRMIGVTGTNGKTSTVQL 121

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  IG     +   A     TTP  +     L+ L   G   V++E SS
Sbjct: 122 LAQALTLLGTPTGTIGTLGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVSS 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+D ++     FTNL RDH+DYH     Y  AK +LF         A++  DDA
Sbjct: 182 HALDQGRVDAVQFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFAR--AGLRAAVVNLDDA 239

Query: 252 YSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + + +      A     V S    G  +  + +   H+  Q T+ +         PL G 
Sbjct: 240 FGRTLFAALDPALHAIGVSSRAQAGATVQAQDLQLDHHGIQFTLHIGEAAHPVRSPLLGR 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L  AG   A+ I  A + E L +L  + GR   +G       + VDYAHT ++L
Sbjct: 300 FNVDNLLAVAGALHALDIAPAQIAEVLGRLQPIHGRMNRLGGAHGAPLVVVDYAHTPDAL 359

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L ++R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I 
Sbjct: 360 EQALTSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAEVTADVAIVTDDNPRGEDGDVIV 419

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G       I + +R  AI  AI M    D++++AGKGHE    V  G +    D 
Sbjct: 420 ADILRGFARPDAAIVQRDRAAAIHQAISMAGADDIVLIAGKGHEPYQEVA-GVRHAFDDA 478

Query: 487 DIIREIL 493
            +  + L
Sbjct: 479 AVAAQAL 485


>gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
 gi|197298532|gb|EDY33076.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
          Length = 496

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 146/494 (29%), Positives = 239/494 (48%), Gaps = 34/494 (6%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L+ +L    +Q   E ++  + +DSR ++ G +FV I G   DGH +  +   +GA 
Sbjct: 3   LDTLLERLEYKVVQGSAETEVTTLINDSRKVENGSVFVCISGAVSDGHKYAAEVAEKGAA 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VV            + ++  ++ V++TR  L+L ++  +G +P   L + G +G    
Sbjct: 63  AVVVEKDVE-------VPADVTVIKVEDTRYALALMSAAYFG-YPAEKLKIVGITGTKGK 114

Query: 130 A---SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                 ++ I + +G     IG   + I         TTP    + +  + +  +G   V
Sbjct: 115 TTTTYMIKSILEETGHKVGLIGTIEAIIGEKKIPAANTTPESYTIHQYFAEMVKEGCDCV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESP 243
            +E SS GL  HR  GI    G FTNLGRDHI    H+  + Y   K  LF++       
Sbjct: 175 VMEVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLLFKQC----RL 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG---KD 299
            I   DD Y ++V   A    C+V + G+ +   +  + V  +     + ++       D
Sbjct: 231 GIANVDDKYFEDVFSGAT---CKVETFGFSEKADLRAENVQLVSRPGYLGVAYHVAGVMD 287

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           FD    +PG F VYN+L A  +C    + + L+ + L+K   V GR E V   S    + 
Sbjct: 288 FDVEIDIPGTFSVYNSLTAISVCRHFEVPAELIKDALKKAK-VKGRIEMVKV-SDDFTLM 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DN
Sbjct: 346 IDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTIITSDN 405

Query: 420 PRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PR E+P+ I  +I  GI      ++E  +R EAI+ AI      DV+V+AGKGHE    +
Sbjct: 406 PRFEEPQAIIDDIKTGIGRTNGKYVEICDRKEAIKYAISHGEVGDVIVLAGKGHEDYQEI 465

Query: 476 TNGEKKMSVDCDII 489
                K  +D  ++
Sbjct: 466 KG--VKYPMDERVL 477


>gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 491

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 155/502 (30%), Positives = 250/502 (49%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+Y    ++++     P+       +    D+  +  G ++VA+ G++  G   +
Sbjct: 1   MKLSELLYGHDHQVLHGDQDTPIT------SGPCLDADRVTPGSLYVALPGHRAGGPEAL 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+A+GA A++V          A   +   ++ V + R   +L ++R +G+     +++
Sbjct: 55  GEALARGAAAVLVEGPDPAGHRPA--DTGACVVRVPDARIATALVSARYHGEPGRAMDVV 112

Query: 119 AVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTS-TISSFAQDNRLT---TPSPIYLAKA 173
           AVTGT+GK+SV+S  + +   S G     IG +   +         +   TP    L   
Sbjct: 113 AVTGTNGKTSVSSMYESLLTLSEGARVGVIGTSGARVGGAPIPMPRSVLSTPESPDLQYL 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +  +G   V +EA+S GL  HR+DG  +  G FTNL +DH+D H T ++Y  AKM L
Sbjct: 173 LACMRDRGGDSVVLEATSMGLLNHRVDGSFVDVGVFTNLTQDHLDDHGTMESYTRAKMLL 232

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
           F+ +      A++ ADD     +      A   V +             +    +  +  
Sbjct: 233 FQGM---CRRAVVNADDPVGAAIPALMPGA---VTTYAVDADADYRATDLVVDSSGTRFV 286

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G+ +    P+PG F V NAL A   C  +G D   +++ L+++  +PGRFE  GT 
Sbjct: 287 LHHDGRKYPAAIPVPGRFSVSNALAAVAACHVLGHDLDALVDALDRMPQIPGRFEHFGTP 346

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAH+ +SL+ +L  IR     R++ VFGCGGDRD  KR  MG+IA   +D+
Sbjct: 347 E-GVSVIVDYAHSPDSLDKVLCTIRGFAPRRVLTVFGCGGDRDTTKRARMGEIAATYSDL 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++T DNPR EDPE I  ++  GI      F   G+R  AI  A+      DV++VAGKG
Sbjct: 406 CVLTSDNPRYEDPEAIMDQVAPGIEAVGTPFARVGDRRGAIALALSSAEPGDVVLVAGKG 465

Query: 469 HETVHIVTNGEKKMSVDCDIIR 490
            ET   V  G+     D  ++R
Sbjct: 466 SETHQSV-GGDLVPFDDMTVVR 486


>gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 485

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 153/471 (32%), Positives = 238/471 (50%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            RK + +  DSR ++  +IFVA+ G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  NRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-F 145
                 +++D  R  L   AS  Y + P+  L + G +G +   S    I +  G +   
Sbjct: 73  --KVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPIT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     I     +   TTP  + L K       + + +V +E SSH L+  R+D +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L    +      DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVF-NIDDKYGKRLYDEFIEDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  + K     F L G+F +YN L A  +   
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKFKEKVEKVKFALLGDFNLYNTLGAVAIARK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GI    +LE +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +G  
Sbjct: 305 MGISWEDILERVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNIRNGNR 363

Query: 385 IV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           I+ +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++  G      ++
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKAGFTKTDDYL 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|262280347|ref|ZP_06058131.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258125|gb|EEY76859.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 499

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 150/489 (30%), Positives = 235/489 (48%), Gaps = 34/489 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +QW ++  +  S DSR +++G IF+A+       K    +F   A+A GA AI+  +   
Sbjct: 15  VQWSKQPFHGFSLDSRKVESGQIFIALTSYSQPEKT--RIFAESALANGALAIISETELG 72

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQ 134
           L++            V  N R+ +  +  R   +     P  I+AVTGT+GK++++  + 
Sbjct: 73  LEN----------EWVCPNVRQRMGEWQQRYLQQIDPVAPARIVAVTGTNGKTTISRLIA 122

Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           ++          +G T   I      +  TT   + L  AL   + QG T  S+EASSHG
Sbjct: 123 ELISSQQQQCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYTKQGATFASLEASSHG 182

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L+Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF         A+I  DD Y+
Sbjct: 183 LEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FSSLKVAVINLDDEYA 240

Query: 254 KEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
             ++  A     +      S+       ++  +          +  +   F    PL G 
Sbjct: 241 ALMINAAKQNPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSQQGSFAVQSPLLGH 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N + A       G D   ++  + +L   PGR + +    R     VDYAHT ++L
Sbjct: 301 FNVENLIAALIAAEQAGFDLEALVAFVPQLIGAPGRMQVIRDGER--LFVVDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I 
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIF 418

Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           A++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D
Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477

Query: 486 CDIIREILG 494
              ++  + 
Sbjct: 478 VVEVQSAIA 486


>gi|169334387|ref|ZP_02861580.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259104|gb|EDS73070.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
          Length = 481

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 243/501 (48%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+D++ + +P  +N             IN +  DSR  + G +FV IVG + DGH +I
Sbjct: 1   MKLKDIL-EGYPHSLNG----NKDIENIDINSIVFDSRKCEEGSMFVCIVGYETDGHKYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  G + I  S            + +   +  +NTR  L+ FA+R Y    +   ++
Sbjct: 56  DSALKLGVKVICHSEELE------GYKDDITYIKCENTRNALAYFANRFYSFPSKNLKLI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT-PSPIYLAKALSYL 177
            V+GT+GK+S       + +  G  +  IG     ++  +   + T P    L K  S +
Sbjct: 110 GVSGTNGKTSFCDIAHTLFENLGFKTDYIGTLGRKNTKLEGQIIRTTPEITELTKDFSDM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V +  +E SSHGL   R+  +    G F+NL  DH+D+H+T + Y+ AK +L+   
Sbjct: 170 VKNDVDYCFLEVSSHGLVLDRVSFLNFYIGVFSNLSMDHLDFHKTMEEYYQAKKKLY--- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +  ++I  DD Y   +          V+S G  +     +       +K   T++  
Sbjct: 227 YMVDRFSVINIDDDYGHRLYNELKEDKKDVISFGEKEQSDYKITIKELSLSKSSFTLTKG 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              +DF+    G+F +YN   A  + +  GI    + E + + H   GR E V  +    
Sbjct: 287 NNKYDFVINSIGKFNIYNVTPAIIIALEEGIGYEKIKEAILRYHGTNGRIERVAED---- 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I++DYAHT +++E ILK IR ++S +I +VFGCGG+RD GKRPIMG ++   AD  I+T
Sbjct: 343 -IFIDYAHTPDAMEKILKLIREVSSKKITLVFGCGGNRDHGKRPIMGSVSEKYADNIILT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR E  E I  +I++GI          +R EAI  A+      ++++V GKGHET  
Sbjct: 402 MDNPRKEKNEDIIKDILNGIKNKDKTEIIYDRKEAINKAVRNKKDDEIVLVLGKGHETYQ 461

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            + + +K    D +   EIL 
Sbjct: 462 ELGD-KKIYFSDRE---EILN 478


>gi|260556908|ref|ZP_05829125.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
 gi|260409514|gb|EEX02815.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
          Length = 499

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 153/487 (31%), Positives = 235/487 (48%), Gaps = 34/487 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           QW  +     S DSR ++ G IF+A+       K     F   A+A GA A++  +   +
Sbjct: 16  QWPRQPFYGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQQ 135
            +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  + +
Sbjct: 74  AN----------EWVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          +G T   I      +  TT   + L  AL   + QG T  S+EASSHGL
Sbjct: 124 LISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA++ 
Sbjct: 184 EQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDDAHAD 241

Query: 255 EVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++K A N   +      S+       ++  +          +  +   F    PL G F
Sbjct: 242 LMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFHLVSQQGSFAVESPLLGHF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT ++L 
Sbjct: 302 NVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDALI 359

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +    D 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDV 478

Query: 487 DIIREIL 493
             +R  +
Sbjct: 479 VEVRSAI 485


>gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
 gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
          Length = 492

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 139/497 (27%), Positives = 246/497 (49%), Gaps = 25/497 (5%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++ ++  E I+++++       +  I  +++ S  ++ G++F+   G++ D H    + I
Sbjct: 1   MLVRNLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEII 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TG 122
            +GA  +VV    S+         + P +VV ++R   S+ ++  Y      +L +  TG
Sbjct: 61  KKGASFLVVEHPISV---------DFPHVVVSDSRLAESILSALYYDDPFNKLLTIGITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           T+GK++ A     + +  G +   +G      +      +  TTP  I + KA+     +
Sbjct: 112 TNGKTTAAHLFHHVLKTLGSNGSMLGTIYYDILGEQKFHHDNTTPDAIEILKAMKNTVDR 171

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              H  +E SSH L   R++ +K    + TN+ RDH+D+HQT   Y   K+ +F+ LL +
Sbjct: 172 SGKHFVMEVSSHSLAMKRVESVKFDIAALTNITRDHLDFHQTFDEYIKTKLHIFD-LLKE 230

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++   D +   V KR      +V+    +     +             +     + 
Sbjct: 231 FGIAVV--SDEFEHIVNKRVK----KVIYGMSENSDYRILSAEIDKFGTNFVLKSRFGEH 284

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIY 359
                +PG    YNA +       +G D   ++E ++    V GRF+F+   +  G  I 
Sbjct: 285 KCSINIPGIHNAYNATLVIASLCELGYDIESIIEAIKSFEGVEGRFQFIREGTLVGIDIV 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VD+AH+ ++LE  L   R I SGRII VFG GG  D+GKRP+M ++    +D++I+T D+
Sbjct: 345 VDFAHSPDALEKTLITARKIASGRIITVFGAGGQADKGKRPMMAEVVCRYSDVSIITTDD 404

Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR EDPE+I  E+  G+P    ++   +R EAI TA+ + N+ D+++VAG+GHE   I +
Sbjct: 405 PRGEDPEEILFEVEKGVPSGSPYLVIPDRKEAIETALTLANRGDMVIVAGRGHEEYQIFS 464

Query: 477 NGEKKMSVDCDIIREIL 493
           +  K    D ++IR+IL
Sbjct: 465 DERKIPFKDAEVIRKIL 481


>gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
 gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
          Length = 505

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 164/503 (32%), Positives = 247/503 (49%), Gaps = 19/503 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+          +   P++  E +I+ ++ DSR + +G +F A+ G+  DG  +I
Sbjct: 8   MKLGALLSPWLA-----IDKLPLELTEIQIDAITLDSREVISGSLFTAVNGHTVDGRRYI 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI  GA AI+  +     +    ++    I+ + +    LS  A R +    +   + 
Sbjct: 63  ETAIKAGASAIIAEADGIANEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALY 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++  + Q    +G  +  +G T   + +  +    TT S I + + LS L
Sbjct: 123 AVTGTNGKTTISQLLAQWANLAGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLSQL 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  I   A  FTNL RDH+DYH   Q Y NAK  LF E 
Sbjct: 183 VEQGADFTAMEVSSHGLVQGRIRDIHFKASIFTNLSRDHLDYHGCMQNYANAKKSLFTE- 241

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTI 293
             +   AII ADDA     +K   NA    +       + G  +    V        +  
Sbjct: 242 -HQSRMAIINADDAVGASWLKDIPNAVAVAIDPQAVANHAGLKLWATDVRFSTQGVTIEF 300

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F  PL G F   N L+A    +A     A +LE   +L  V GR E V  ++
Sbjct: 301 DSSWGLGKFTAPLVGSFNATNLLLALATLLATNHSMADLLEKAPQLQAVIGRME-VFQDT 359

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +IA  L+D  
Sbjct: 360 DKAMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDNGKRPMMAEIAERLSDCI 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+TDDNPRSEDP  I  +++ G+          +R  A R A+   ++QD+++VAGKGHE
Sbjct: 420 ILTDDNPRSEDPNGIVDDMLTGLISPESATIIHDRETACRHALTHASRQDIILVAGKGHE 479

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ +     S D + +  +L
Sbjct: 480 DYQILADRTIHYS-DRETVAALL 501


>gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
 gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
          Length = 485

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 153/471 (32%), Positives = 243/471 (51%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             N   +++D+ R  L   AS  Y + P+  L + G +G +   S    + +  G     
Sbjct: 73  --NVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPIT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     I     +   TTP  + L K       + + +V +E SSH L+  R++ +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDVNNSVINIDDEYGKRLYDEFIVDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  + +     F L G+F +YN L A G+ + 
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKYKEQVEKIKFALLGDFNLYNTLGAIGIALK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +  R
Sbjct: 305 IGISMEEILKRVSTIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARNIKNVNR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I +FGCGGDRD+ KRPIM K+A DL+DI I+T DNPR+E PE+I  ++  G      + 
Sbjct: 364 VITIFGCGGDRDRTKRPIMAKVAEDLSDIVILTSDNPRTESPEQIFDDVKKGFIKSDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ A+ M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKVAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|206602137|gb|EDZ38619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Leptospirillum sp. Group II '5-way CG']
          Length = 509

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 157/483 (32%), Positives = 241/483 (49%), Gaps = 18/483 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-----SLQDFS 83
           ++  ++ DSR ++ G +F+   G       F+ +A+ +GA  +V          S    S
Sbjct: 28  RVLNLTDDSRQVEEGALFLIRPGEGFR-WEFVNEALDRGAFYLVADRNAFPEIDSRPALS 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
           + IR +  + +V+N  + +   AS  +G       ++ VTGT+GK++ +   + +C+  G
Sbjct: 87  SRIRESAGLSLVENLPRSVGQLASSWWGFPSSSLKVIGVTGTNGKTTSSFLTRSVCRAGG 146

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L    IG     +     +   TTP  I +    +     G+  VS+E SSH LDQ RL 
Sbjct: 147 LPCGLIGTVVFDVGDGETEAPQTTPGAIQIQSLFAESLQNGLKSVSMEVSSHALDQDRLA 206

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMK 258
           G       FTNL RDH+DYH+T +AYF AK +L     P  +   A+++  D Y   + K
Sbjct: 207 GTIFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGTHPVAVVHTGDEYGARLAK 266

Query: 259 RAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                G RVL+ G     +     V    +  + T+     +      L G + + N L 
Sbjct: 267 ELERDGRRVLTYGEGADAMIRPIHVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNILG 326

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A G   A+G+ +  + E +  L  VPGRFE V + + G  + VDYAHT ++L  +L  +R
Sbjct: 327 AVGCGEALGLSTEKIAEGIHSLSGVPGRFERVDSPA-GFSVIVDYAHTDDALSNLLSAVR 385

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +T G++I VFGCGGDRD+GKRP MG +A  L+D  ++T DNPR+E+PE I  EI  G+ 
Sbjct: 386 PVTRGKVITVFGCGGDRDRGKRPRMGNVAGRLSDFVVLTSDNPRTENPESILDEIEPGLR 445

Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                ++   +R  AI  AI      D +V+AGKGHE   I+   EK    D ++ R  L
Sbjct: 446 ETGTPYVRVSDRKSAIFDAIRRARSGDAVVIAGKGHENYQILGK-EKIHFDDREMARLAL 504

Query: 494 GLI 496
             I
Sbjct: 505 AEI 507


>gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 511

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 142/503 (28%), Positives = 245/503 (48%), Gaps = 24/503 (4%)

Query: 11  FPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L++   I P     ++ IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAE
Sbjct: 6   LHKLLDLAGIIPSSNLIDQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENI--LAVTGTSGK 126
           A ++  A   +  S   +    ILV+D+   +      +  + +    +  + VTGT+GK
Sbjct: 66  AAIIGPAAKQKIGSIDRKR---ILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ + ++ G  +   G        F++    TT     L K L+          
Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESP 243
            +E SSH + Q R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+  
Sbjct: 183 ILEVSSHSIAQKRISGCEFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNEKDGI 242

Query: 244 AIIYADDAY----SKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK 298
           +++  DD +    S ++ KR+     ++    ++   F  +       N          +
Sbjct: 243 SVLNHDDPWISKLSSDLEKRSSLVSTKITESEFKNHDFFFVTDKKFTENGSTCIFHTPKE 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-- 356
                 PL GEF + NA+ A  +   +      + + +      PGR E +  ++     
Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDFSR 362

Query: 357 ---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD GKRP+MG IA + +D  
Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAEEFSDQL 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE
Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKRKKITIEIDRFKAINESIKFANKEDIVLIAGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ +       D  I  ++L
Sbjct: 483 DYQILNDKVIN-FDDRKIAYKLL 504


>gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
 gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
          Length = 508

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 151/485 (31%), Positives = 234/485 (48%), Gaps = 27/485 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  + +DSR I+ G  F+A  G+  DG+ FIPQAIA GA A++       ++F     
Sbjct: 21  VEIKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVLYDP----RNFVWKSE 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L VD+ +    L AS +Y    + +  + +TGT+GK+S + +  Q     G  + 
Sbjct: 77  WRIPALAVDDLKMKAGLIASYVYDHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTA 136

Query: 146 QIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G   +      Q    TTP    L ++      +G  +V +E SSHGL Q R  G   
Sbjct: 137 VLGTLGSGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGRTMGTAF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL RDH+DYHQ   AY  AK  LF    P    A++  DD    E+ ++     
Sbjct: 197 SVALLTNLSRDHLDYHQDMDAYAAAKSSLF--FWPGLKYAVVNMDDVLGVELSRQLVTKP 254

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYNA 315
            +++  G++       K   + +   +   + G +FD             L G+F   N 
Sbjct: 255 IKMMGYGFRYPENRDSKQFKMVHGSNLKFDIHGMEFDIEFEDSHEHLRIGLLGKFNASNL 314

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L      +A GI     +  L+ +  +PGR E     ++   I VDYAHT ++LE +L  
Sbjct: 315 LAVVAALLASGIRLPDAVGSLQSVQSIPGRMEKYYGINQ-STIIVDYAHTPDALEKVLCT 373

Query: 376 IRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +R +      + R+  V GCGGDRD+GKR ++G++A  LAD  I T DNPRSEDP +I  
Sbjct: 374 LRELLRIEGRNARLFCVVGCGGDRDRGKRAMVGEVATRLADEVIFTSDNPRSEDPLRIIE 433

Query: 431 EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           +I  G     +  + +R  AI  AI      D++++AGKGHE    +  G+K    D ++
Sbjct: 434 DIAAGAVEGNYQVEVDRALAIYQAIANARSNDIVLIAGKGHEKFQEIK-GQKISFSDAEV 492

Query: 489 IREIL 493
           ++++L
Sbjct: 493 VQQVL 497


>gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
          Length = 485

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 218/499 (43%), Positives = 286/499 (57%), Gaps = 23/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DLI  D        +         ++  V+ DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MKLRDLIGND--------AAIEPAVAALEVTGVALDSRVVRPGDLFFALAGSKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A        + A ++    A      P + V N R+ L+L A+R +   P  I AV
Sbjct: 53  DAAVA--------AGAVAIVGDHAPDGCKVPFIAVANPRRALALAAARFFPAQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +R G +S  IG    +S         TTP PI L + +  ++ 
Sbjct: 105 TGTSGKTSVAAFTRQIWERLGHASASIGTIGLVSPKRTVYGSLTTPDPIALHRQMDEIAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T   Y  AK+RLF EL+P
Sbjct: 165 EGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRELVP 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295
               A+I AD   S E +  A   G RV++VG  G      I L +V      Q++T+  
Sbjct: 225 PGGAAVISADHDCSAEAIDAAKARGLRVMAVGRNGDGAGEGIRLTEVGVDGFSQKLTVEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            GK +  L PL GEFQV NALV+AGL I  G D+A V   LE L    GR E VG    G
Sbjct: 285 RGKRYVVLLPLAGEFQVENALVSAGLAIGTGSDAANVFASLEHLEGAKGRLERVG-ERNG 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I+VDYAH  ++L   L+ +R     R++VVFG GGDRD GKRPIMG+IA + AD  I+
Sbjct: 344 APIFVDYAHKPDALAKALQALRPYAKRRLVVVFGAGGDRDAGKRPIMGEIAAENADGVII 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSE PE IRA I+    G  E G+R  AIR AIE L + D L++AGKGHET  IV
Sbjct: 404 TDDNPRSEQPEAIRAAILATAKGAREIGDRAAAIRAAIEELEQGDALLIAGKGHETGQIV 463

Query: 476 TNGEKKMSVDCDIIREILG 494
            + E     D + +   L 
Sbjct: 464 GS-EVLPFSDHEAVAAALA 481


>gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 511

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 143/501 (28%), Positives = 249/501 (49%), Gaps = 24/501 (4%)

Query: 13  ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L+N + I P +   +++IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAEA 
Sbjct: 8   KLLNLVGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAA 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENI--LAVTGTSGKSS 128
           ++ SA   +  S        ILV+++   +      +  + +    +  + VTGT+GK++
Sbjct: 68  IIGSAAKEKIGSFDRER---ILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTT 124

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +   ++ + ++SG  +   G        F++    TT     L K L+           +
Sbjct: 125 ITFLLEYLLKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAIL 184

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPAI 245
           E SSH + Q R+ G +     FTNL +DH+DYH   ++YF  K +LF    L+ K+  ++
Sbjct: 185 EVSSHSIAQKRISGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGISV 244

Query: 246 IYADDAY----SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF 300
           +  DD +    S ++ KR+     ++    ++   F  +       N          +  
Sbjct: 245 LNHDDPWISKLSSDIEKRSSLVSTKITESEFENDDFFFVTDKKFTENGSTCIFHTPKEKI 304

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---- 356
               PL GEF + NA+ A  +   +      + + +      PGR E +  ++       
Sbjct: 305 QLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDVARSL 364

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD GKRP+MG IA + +D   +
Sbjct: 365 PTVIVDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAEEFSDQLFI 424

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE  
Sbjct: 425 TSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIVLIAGKGHEDY 484

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ +       D  I  ++L
Sbjct: 485 QILNDKVIN-FDDRKIAYKLL 504


>gi|288871613|ref|ZP_06118234.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
 gi|288862802|gb|EFC95100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
          Length = 493

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 146/496 (29%), Positives = 228/496 (45%), Gaps = 31/496 (6%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E + +L    +    + ++ +V  DSR  +   +FV   G K D H FIP  +  G +
Sbjct: 7   FREWLEELEYDVISGNLDIEVEDVIYDSRKARENVVFVCTKGTKIDSHEFIPDVVKAGVK 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VV          A I      + V ++R+ L+L ++  +G+  E ++ +  T  K   
Sbjct: 67  ALVVER-------QAEIPDGVTAIRVHSSREALALLSAARFGRPQEKMITIGVTGTKGKT 119

Query: 130 A--SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                ++ I +  G     IG T   I S       TTP    L ++   +   G  ++ 
Sbjct: 120 TTTHMIKAILESCGKKVGMIGTTGIVIGSEVTPTMNTTPESYQLFESFERMVQAGCEYMV 179

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS     HR+DGI+   G FTN+  DHI  D H     Y   K     +LL +    
Sbjct: 180 MEVSSQAFKMHRVDGIRFDYGLFTNISPDHIGPDEHADFAEYLYYK----SQLLSRCRIG 235

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGK-DF 300
           I+  DD + +E++K   +  C + S   + +   +       ++ +       V G+   
Sbjct: 236 IVNRDDEHYREIIK---DTACELASYSLEQEADFMAGQIHYVSEPEFVGLEFDVTGRYKL 292

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    +PG+F VYNAL A  +C  + +    V   LE L  V GR E V ++ +   + V
Sbjct: 293 EARVNIPGKFNVYNALAAISVCSFLDLPKEKVRHALEHLS-VNGRMEIVYSSKK-CTVIV 350

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH + S+E +LK +R     R++ VFGCGG+R + +R  MG  A  LAD  I+T DN 
Sbjct: 351 DYAHNAVSMESLLKTLREYHPKRLVCVFGCGGNRSKDRRYSMGDSAGRLADFTILTADNS 410

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R E    I A+I   I      FIE  +R EAI  ++      D++ V GKGHE    V 
Sbjct: 411 RFEKTGDIIADIRSSIEKTGGEFIEIPDRREAIAYSMIHARPGDMIAVIGKGHEDYQEV- 469

Query: 477 NGEKKMSVDCDIIREI 492
           NG +    D +++ EI
Sbjct: 470 NGVRHHFSDREVVLEI 485


>gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 497

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 141/502 (28%), Positives = 239/502 (47%), Gaps = 26/502 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  K+  +L+  +           +++++ DSR +    +F  I G   DGHLF  +A  
Sbjct: 1   MFAKELADLL-VIKRVEGSLENIVVDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
            GA   V S     Q        ++P++ V +  + ++LFA+  YG   EN+  + VTGT
Sbjct: 60  LGANVFVASKPIKEQVG------DSPVIYVKDVTRVMTLFANHFYGYPSENLNMIGVTGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++V   V  + +  G  +  IG     I     + R TTP  + + + L  +   G 
Sbjct: 114 NGKTTVTHMVDYLLEELGKPTALIGTMYRKIGEERIETRNTTPEILTVHETLQKVKEIGG 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SSH L   R+ GI      FTNL  +H+D H+T + Y +AK  LF +L     
Sbjct: 174 DTCIMEVSSHALQLGRVWGIDYNVAVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSK 233

Query: 243 -----PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                 AI+  D  Y  +    A++    ++S G+ +   I   ++ +        ++V 
Sbjct: 234 NEKPRVAILNRDQEYFGQF---AYSTSAEIISYGFSEEADIRATEIESNGAMTTFVVTVN 290

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+    + P+ G F VYN L A G+ +  GI     +E + K   V GR + +    +  
Sbjct: 291 GEKIPVMVPMIGLFNVYNVLAAFGVAMVNGIPLRKAIEKIAKFPGVGGRMQLIQ-KGQPF 349

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLADIAIV 415
           ++ +D+AHT + LE +L  +  +   R+I + G  GG+RD   RP +G+IA + +D  I+
Sbjct: 350 QVIIDFAHTPDGLENVLSTLEEVKINRVITIMGHSGGNRDSSMRPELGEIAFEKSDYVIL 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E  EKI +EI+ G       +    +R +AI  A+E+  + D+L+ AGKG E 
Sbjct: 410 TADNPRQESLEKIYSEIVSGRKNENTPYECVDDRKQAIERALELAQEGDILLFAGKGVEP 469

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             ++   E     + + + + L
Sbjct: 470 YQVIGE-EYIPYNEVETVVQAL 490


>gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 485

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 153/471 (32%), Positives = 239/471 (50%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            RK + +  DSR ++  +IFVA+ G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  NRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-F 145
                 +++D  R  L   AS  Y + P+  L + G +G +   S    I +  G +   
Sbjct: 73  --KVSYVLIDEIRHKLGYLASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPIT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     I     +   TTP  + L K       + + +V +E SSH L+  R+D +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L    +      DD Y K++        
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDTNNSVF-NIDDKYGKKLYDEFIEDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  + K     F L G+F +YN L A  + + 
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKFKEKVEKVKFALLGDFNLYNTLGAVAIAVK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GI    +LE +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +G  
Sbjct: 305 MGIKWEDILERISNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNIRNGNR 363

Query: 385 IV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           I+ +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++  G      + 
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKTGFAKNDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|169632242|ref|YP_001705978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii SDF]
 gi|169151034|emb|CAO99680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii]
          Length = 499

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 152/483 (31%), Positives = 235/483 (48%), Gaps = 34/483 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           QW ++  +  S DSR ++ G IF+A+       K     F   A+A GA A++  +   +
Sbjct: 16  QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQQ 135
            +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  + +
Sbjct: 74  AN----------EWVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          +G T   I      +  TT   + L  AL   + QG T  S+EASSHGL
Sbjct: 124 LISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA++ 
Sbjct: 184 EQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDDAHAD 241

Query: 255 EVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++K A N   +      S+       ++  +          +  +   F    PL G F
Sbjct: 242 LMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT ++L 
Sbjct: 302 NVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDALI 359

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +    D 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDV 478

Query: 487 DII 489
             +
Sbjct: 479 VEV 481


>gi|159902952|ref|YP_001550296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888128|gb|ABX08342.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9211]
          Length = 505

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 155/502 (30%), Positives = 250/502 (49%), Gaps = 23/502 (4%)

Query: 11  FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L+  + +  P+  ++ +I  +SSDSR ++ G +F  + G K++G  F  +A   GA 
Sbjct: 5   LHSLLKAIGLDVPIDLQDPEIKNISSDSRCVKKGDLFFGLPGQKDNGGAFCNEAFLAGAV 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKS 127
           A VV    S +D     + N  ++V D   +++   AS  +GK      ++ VTGT+GK+
Sbjct: 65  AAVV--GDSARDCIPHDKKNLVVVVPDPVSQWMGEIASVFWGKPSLEMALIGVTGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVS 186
           +    ++ + + SG ++  +G          +  + T S    L   LS + + G +  +
Sbjct: 123 TTTHLIEHLSKSSGKATALLGTLINRWPKYSEQSIHTTSFGDTLNAQLSQIVASGASLCA 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI- 245
           +E SSH L Q R+ G+      FTNL +DH+DYH++ +AYF AK  LF+  L K+  A  
Sbjct: 183 MEVSSHALSQRRVAGLYFSGAIFTNLTQDHLDYHKSMEAYFEAKALLFQSYLIKDGQARA 242

Query: 246 -IYADDAYSKEVMKRAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKD 299
            +  DD +   + KR      +  S+  +        + +  +       +  I     +
Sbjct: 243 VVNIDDQWGFRLAKRLGRNCWKS-SLDLKNIQSVRPELFITGIKMTAAGAEGFIHTPFGE 301

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR----- 354
             F+ PL G F + N L + G+ +  G     +L        VPGR E V    +     
Sbjct: 302 GPFMTPLIGRFNLMNLLQSIGVLLQQGFKLDTLLHATATFSGVPGRMEQVKVPVKSDSLP 361

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + L+  LK +R   SG++I VFGCGGDRD+ KR  MG+IA +++DI I
Sbjct: 362 MPIVLVDYAHTPDGLKNALKAVRPFVSGKLICVFGCGGDRDKSKRSYMGEIAAEISDIVI 421

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+EDP  I  +I+ GIP     I + +R +AI  +I      D++++AGKGHE 
Sbjct: 422 VTSDNPRTEDPMAIIEDILSGIPTTFEAIVELDRCKAIEMSILHAKSNDLIIIAGKGHED 481

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ + +K    D +   E L
Sbjct: 482 YQILGD-KKIYFNDKEAAIEAL 502


>gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella piezotolerans WP3]
 gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans
           WP3]
          Length = 488

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 153/493 (31%), Positives = 226/493 (45%), Gaps = 21/493 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++DL+   F               E   N+++ DSR ++AG +FVA+ G + DG  +I
Sbjct: 1   MLIRDLLAPWF----------HYSGIEV-FNDLTLDSRALKAGDLFVAVPGYQVDGRQYI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119
             A+  GA A++V +    +  + +      I      R+   L A           I+ 
Sbjct: 50  QAALDNGAAAVLVHTDSPEEHGNISTDDGLLISFFQLNRQVSVLAAQAYPLSSKRPKIIG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+SV   + Q+ Q     +  +G     +     D+  TT   I L K L    
Sbjct: 110 VTGTNGKTSVTQLIAQLQQLQSKQTAVMGTLGNGLWGELVDSGNTTADAITLIKQLQNFE 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                  ++E SSHGL Q R++ +      FTNL RDH+DYH T +AY  AK RLF    
Sbjct: 170 KSHADTCAMEVSSHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMEAYGAAKQRLFT--F 227

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 +I  DDA     + +A +      S+ G     I+ K+          T+    
Sbjct: 228 SSLRAGLINCDDAIGASWLAQATSTKTLGFSIKGNTKADIYAKQCLYHDGGVTCTLVWPE 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     PL G+F + N + A G    +G D A ++     L  V GR E   T+     
Sbjct: 288 GEAKLQSPLLGDFNLSNLVAALGALYLVGEDMAAIVRLASALTPVAGRMERFTTSGN-VT 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +++E  L+ +R      +  +FGCGGDRD GKRP+M   A   AD  +VT 
Sbjct: 347 LVVDYAHTPDAIEQALQALRVHCKSELWCLFGCGGDRDSGKRPMMASSAEQFADHVMVTS 406

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DN RSE+PE I A++  G         + NR  AIR  + +    D++++AGKGHET   
Sbjct: 407 DNARSENPEDIIADVFSGFTEPQKAQSQVNRKTAIREVVALAKPGDMVLLAGKGHETYQE 466

Query: 475 VTNGEKKMSVDCD 487
           V NGEK    +  
Sbjct: 467 V-NGEKLNYDERA 478


>gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 515

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 141/496 (28%), Positives = 241/496 (48%), Gaps = 24/496 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F ++  +  +  +  DSR +     F+A+ G+  DG  FIPQA++ GA+ I+     
Sbjct: 19  LAKFGIETADIMVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQAVSLGAKVIIAECDT 78

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
             +    ++R  + I+   +    LS  A+  Y        I+ VTGT+GK+S      Q
Sbjct: 79  QQEHGQTSMREQSLIISFYDLSAQLSALAATFYHFPASEMQIIGVTGTNGKTSTVQLTSQ 138

Query: 136 ICQRSGLSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +       +  IG   +         +   +   TTP  I + K ++  +   V  V++E
Sbjct: 139 LAALLNKRAASIGTLGSGVISCTGECASFGETINTTPDAITMHKLMAQFAQDNVKQVALE 198

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L Q R+  +K+     TNL RDH+DYH T QAY  AK  +  +  P+   A++  
Sbjct: 199 VSSHALVQKRVAALKVDVAVLTNLTRDHLDYHGTMQAYAQAKREILTQ--PELKFAVLNG 256

Query: 249 DDAYSKEVMKRAHNAGCRVLS--------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ++  SK+ + +  N    V+         +G   K    K+V       + T+     + 
Sbjct: 257 NEIESKQWLAQLPNTVTPVVYGIDDESLLLGNAQKVCLAKEVEYSSQGCRFTLVSSWGEC 316

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G F ++NAL A    + +G     + +  ++L  V GR E   ++ +   + V
Sbjct: 317 EIQLSLLGRFNIFNALAAIASQLCLGQALTDIADVAQQLVPVAGRMERF-SDEKSPTVVV 375

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++L+  L  +R  + GR+ V+FGCGGDRD+GKR +MG+ A   AD+ ++T+DN 
Sbjct: 376 DYAHTPDALKQALLALRQHSEGRLFVIFGCGGDRDKGKRSLMGEAAETCADVVMITNDNS 435

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSEDP  I ++I+ G         + +R  AI  A+     +D+++VAGKGHE   I+ +
Sbjct: 436 RSEDPNAIASDILAGCIQPEKIQVELDRKCAIAKAVADATPKDIILVAGKGHEDYQIIGS 495

Query: 478 GEKKMSVDCDIIREIL 493
                  + + ++++ 
Sbjct: 496 ETVAY-NEREYVKQMF 510


>gi|117928213|ref|YP_872764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648676|gb|ABK52778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
          Length = 522

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 158/488 (32%), Positives = 236/488 (48%), Gaps = 35/488 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR +Q G +F A+ G    G  ++  A+  GA A++   A +     + I   
Sbjct: 39  ICGVTHDSRRVQPGDLFAALPGAHTHGARYVADAVTAGAVAVLTDPAGA-----SLINRE 93

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+L+  + RK L   A+ +YG     +  L VTGT+GK++   F+    + +G  +  +
Sbjct: 94  VPLLICADPRKTLGPVAAAIYGHPARALVTLGVTGTNGKTTTVFFLDAGLRAAGHRTGLL 153

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T +      +  TTP    +   L+ +   G+T  ++E SSH L  HR+DG     
Sbjct: 154 GTVMTRLGERTVPSARTTPEAPDIQALLARMRDDGITAAAMEVSSHALALHRVDGTGFAC 213

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             FTNL  DH+D+H   + YF AK RLF  +  PK   A+I  DD Y + +   A  A  
Sbjct: 214 VGFTNLSHDHLDFHGDMENYFAAKARLFRPDFAPK---AVIVVDDEYGRRLADTAPIAVR 270

Query: 266 RV------LSVGYQGKFIHLKKVCAIHN------KQQVTISVEGKDFDFLFPLPGEFQVY 313
            V      L    +  +  +    A          Q  T++    + +    LPG F + 
Sbjct: 271 TVSGRPEHLPPDRRPDWRVVAVRAAAAVSPTRPAGQVATVAGPIGEVELSLQLPGRFNLT 330

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL+A  + + +GI        +  L  VPGR E V    +   + VDYAHT  ++  + 
Sbjct: 331 NALLALAILVEVGIPVEAARAGIGDLAGVPGRLELVDA-GQPFAVLVDYAHTPEAVATVA 389

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GR+I+V GCGGDRD  KRP MG  A +LAD+AI T DNPRSEDPE+I A ++
Sbjct: 390 REVRPDR-GRLIIVIGCGGDRDPSKRPAMGAAAAELADLAIFTSDNPRSEDPEEIVAAML 448

Query: 434 HGIPGFI--------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G+P            + +R EAI+ AI+     DV+++AGKGHE    +  G      D
Sbjct: 449 TGVPAVTADRRAEIRVELDRHEAIKDAIQAARPGDVVLIAGKGHEQGQEI-GGVVHPFDD 507

Query: 486 CDIIREIL 493
               R+ L
Sbjct: 508 RLAARDAL 515


>gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 487

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 156/498 (31%), Positives = 244/498 (48%), Gaps = 31/498 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+  + +  P       I  +   E+++++++SDSR    G +FVA+ G   DGH +I
Sbjct: 1   MKLEQYLSELRP-------IAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           PQA  QG  A VV       D           + V +T + L+  AS  YG    ++  +
Sbjct: 54  PQAYTQGCRAFVVE------DLPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ + ++ ++ G  +  +      +   ++    TTP P+ L      +
Sbjct: 108 GVTGTNGKTTVATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH   Q R+  +    G FTNL RDH+DYH +   Y  AK   F+ L
Sbjct: 168 ADAGCEYAFMEVSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              ++ A++ ADD      +    N   RV +   +    +  K+   H      + +  
Sbjct: 228 -GAQAFALVNADDKNG---LVMVQNTRARVCTYALKSMANYRAKIVERHIDG---MDMYM 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +    L G+F  YN L   G    +G D   VL  L +L  V GRF+   T+  G  
Sbjct: 281 DDREVFVRLVGDFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTF-TSKDGYV 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VDYAHT ++L  +L  IR +    ++I V G GG+RD+GKRPIM K A   ++  I+T
Sbjct: 340 AIVDYAHTPDALVNVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILT 399

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR E+P++I  E+  G+        +   +R EAIRTA  +  K D +++AGKGHET
Sbjct: 400 SDNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459

Query: 472 VHIVTNGEKKMSVDCDII 489
              +  G K    D +++
Sbjct: 460 YQEIR-GVKHHFDDREVV 476


>gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 541

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 159/545 (29%), Positives = 253/545 (46%), Gaps = 57/545 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++ LI       ++   +      E ++  V++DSR    G +FVA+ G++ DGH F+
Sbjct: 1   MKVRQLIK---AAAVDYTVLAEGASAELEVTTVTADSRRAGPGSLFVALPGSRVDGHDFL 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ QG   ++      L             L   +TR       + L G   + +  +
Sbjct: 58  AAAVKQGCRVVLCQPGCRL---PTEKAPEVLHLATADTRAAFGRLCAALRGFPAQEMVMI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ + +R+G     IG  +    +       TTP P  L   L  +
Sbjct: 115 GITGTNGKTTASYLLEDLIRRAGGEPGVIGTVNYRYRNRVLPATHTTPDPESLQPLLREM 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  GV+HV +E SSH L+Q R+ GI   A  FTNL  +H+DYH   ++YF  K  LF   
Sbjct: 175 AEAGVSHVIMEVSSHALEQQRVAGIAFDAALFTNLSHEHLDYHGDMESYFAGKKLLFNRY 234

Query: 238 LPKESPAIIYAD---------DAYSKEVM-------------KRAHNAGCRVLSVGYQGK 275
           L   + A++ +          D +++ ++             +R      R+   G  G 
Sbjct: 235 LKPGAAAVVLSGRAEQDDASLDCWNQRLIDELSPRVLPPGCRRRPKAGEVRLWRCGAAGN 294

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            + L +        +  +      +     L G+F + N L  AG+ +A+G+  A +   
Sbjct: 295 ELRLLRRRLSLAGIEAELQSSEGAWRLSSTLVGDFNLDNLLGVAGVGLALGMTPATIAAA 354

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L      PGR E    + RG  + VDYAHT ++L  +LK +R + +GR++VVFGCGGDRD
Sbjct: 355 LADAAPPPGRLERF-RSRRGVEVLVDYAHTPDALGHVLKALRRLATGRLVVVFGCGGDRD 413

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------------------ 437
           + KRP+MG++A  LADI ++T DNPRSE P  I A+I  G+                   
Sbjct: 414 RAKRPLMGEVAAALADIVVLTSDNPRSEAPAAIMADIQRGLATVDARRGRLESLLAAPLN 473

Query: 438 ------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                 G+    +R +AIR  I      DV++V GKGHET  I+  G      D   +RE
Sbjct: 474 RRTTCQGYDLVVSRRQAIRDTIYHARSGDVVLVCGKGHETSQIIA-GSCLDFDDRREVRE 532

Query: 492 ILGLI 496
            L ++
Sbjct: 533 QLAVL 537


>gi|239501973|ref|ZP_04661283.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           AB900]
          Length = 499

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 152/487 (31%), Positives = 234/487 (48%), Gaps = 34/487 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           QW  +  +  S DSR ++ G IF+A+       K     F   A+A GA A++  +   +
Sbjct: 16  QWPRQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQQ 135
            +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  + +
Sbjct: 74  AN----------EWVCPDVRQRMGEWQKRYLQQADGVKPLRIIAVTGTNGKTTISRLIAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          +G T   I      +  TT   + L  AL   + QG T  S+EASSHGL
Sbjct: 124 LISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA + 
Sbjct: 184 EQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDDAQAD 241

Query: 255 EVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++  A N   +      S+       ++  +          +  +   F    PL G F
Sbjct: 242 LMINSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT ++L 
Sbjct: 302 NVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDALI 359

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +    D 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDV 478

Query: 487 DIIREIL 493
             +R  +
Sbjct: 479 VEVRSAI 485


>gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 511

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 136/502 (27%), Positives = 239/502 (47%), Gaps = 22/502 (4%)

Query: 11  FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L++ + I P +   + +IN +S +S+ +Q G +F+ + G   DG  +  +AI  GAE
Sbjct: 6   LHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A ++ SA   +  S  I     +++ DN         +  + +    +  + VTGT+GK+
Sbjct: 66  AAIIGSAAKEKIGS--IDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++   ++ + ++ G  +   G        F++    TT     L K L+           
Sbjct: 124 TITFLLEYLLKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFAI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPA 244
           +E SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+   
Sbjct: 184 LEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGIC 243

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLS-----VGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  DD +  ++          V +           F  +                  + 
Sbjct: 244 VLNHDDHWISKLSSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPREK 303

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                PL GEF + NA+ A  +   +      + + ++     PGR E +  ++      
Sbjct: 304 IQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDNNDVSRS 363

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA + +D   
Sbjct: 364 LPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEEFSDQLF 423

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+   K+D++++AGKGHE 
Sbjct: 424 ITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFAKKKDIVLIAGKGHED 483

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ +       D  I  ++L
Sbjct: 484 YQILNDKVIN-FDDRKIAYKLL 504


>gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia canadensis str. McKiel]
 gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel]
          Length = 478

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 154/478 (32%), Positives = 255/478 (53%), Gaps = 23/478 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  I  +S++S++I+ G +F A+ G   DG+ FI  A+ +GA  ++  +  +      
Sbjct: 9   FQQHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNKGAVLVITDNEKN------ 62

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   ++ V++ +K L       Y K P++++AVTGT+GKSSV S++ Q+    G  +
Sbjct: 63  --TAINKVIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVISYIAQLYSLLGEKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     P           K    L+  G+ +++ EASSHGLDQ RL
Sbjct: 121 ASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYLAFEASSHGLDQTRL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K+    FT+   DH+DYH T++ Y  AK++LF   L   + +I+ +D    + +   
Sbjct: 181 GENKVNIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAISILNSDIEEIEFIKAY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +    + ++VG +G    + ++ +    Q +  +   + + F  P+ G FQ  N L+AA
Sbjct: 241 LNKHNIKFITVGIKGDLQ-ITRINSSLKGQNIDFTFNNRKYSFNTPIIGSFQASNLLIAA 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 G+    V+  L  +  V GR + +        I+VDY+HT ++LE  L  ++ I
Sbjct: 300 LSEYYTGVAFDEVIGSLVDVKPVKGRMQQI----ENTNIFVDYSHTPDALEKALLELKNI 355

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                ++ V+FGCGG+RD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEII GI 
Sbjct: 356 QVLGSKLNVIFGCGGNRDKKKRSLMGQIAAKLADNVIITDDNPRLEDPKLIRAEIISGID 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +IE  NR +AI+  I  LN+ D+L++AGKGHE   I+ N +K    D +I+++ +
Sbjct: 416 KANYIEIENREKAIKYGINNLNQDDILLIAGKGHENYQIIGN-KKIPFDDAEIVKKYI 472


>gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
 gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
          Length = 485

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 154/471 (32%), Positives = 242/471 (51%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             N   +++D+ R  L   AS  Y + P+  L + G +G +   S    + +  G     
Sbjct: 73  --NVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPIT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     I     +   TTP  + L K       + + +V +E SSH L+  R++ +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDVNNSVINIDDEYGKRLYDEFIVDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +    +   +    + I  + +     F L G+F +YN L A G+ + 
Sbjct: 249 SEIISYGIDGGDLEGDYLDDGY----IDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +  R
Sbjct: 305 IGISMEEILKRVSTIKAAPGRFEALDC-GQNYKVIVDYAHTPDALVNVIVAARNIKNVNR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           II +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  G      + 
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGFIKSDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
          Length = 504

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 161/494 (32%), Positives = 244/494 (49%), Gaps = 16/494 (3%)

Query: 13  ELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           E I+ + +      R   +  V  DSR + AG +FVA+ G   DG+ FI  A+ QGA AI
Sbjct: 5   EAISGVRVLEAAGSRAIDVRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGAAAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  SA +        +    + +V++ R+ L+  ++ ++G+  +   + AVTGT+GK++ 
Sbjct: 65  ITDSAETFAALRER-QPELAVALVEHGRRALAEVSAAVFGRPEQTLKLSAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A  ++Q+ +  G  S  +G   T I    +++  TTP    +    +     G T V +E
Sbjct: 124 AFLLEQMLRSVGRKSVLMGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVVME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIY 247
            SSH L+Q R+ G+ +    FTNL +DH+DYH T +AYF AK R+F  +       A+I 
Sbjct: 184 MSSHALEQERVWGLPVDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGVGALPPRVAVIN 243

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D  Y  E+      A      +G  G +   + V       +              PL 
Sbjct: 244 LDSEYGDEMCHEFRGATLMTYGMGEFGNY-RAENVSLALGDTRFDFVTPEGRIAMHSPLS 302

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTS 366
           G   V N L A+   +A G+    V    E LH VPGRF+ V G+ + G  + VDYAHT 
Sbjct: 303 GRVNVENLLAASCAALARGLTLEQVAHAAEMLHQVPGRFQVVPGSKAAGFFVVVDYAHTD 362

Query: 367 NSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++L  ++   R       GR I +FGCGGDRD+ KRP MG+ A + +D+ +VT DNPRSE
Sbjct: 363 DALRNLIALARESVVGHGGRAITLFGCGGDRDKTKRPKMGRAAGEDSDLVVVTSDNPRSE 422

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           +P  I  E + G+      FI + +R  AI  AI      D++++AGKGHE V I  +G 
Sbjct: 423 EPMTIINEALLGVRETQTTFIVEEDRRAAIEVAIRSAKPGDIVLLAGKGHEKVQIFADGT 482

Query: 480 KKMSVDCDIIREIL 493
                D      +L
Sbjct: 483 VP-FDDVAEAERVL 495


>gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
 gi|46576910|sp|Q7MWM7|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
          Length = 487

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 156/498 (31%), Positives = 244/498 (48%), Gaps = 31/498 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+  + +  P       I  +   E+++++++SDSR    G +FVA+ G   DGH +I
Sbjct: 1   MKLEQYLSELRP-------IAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           PQA  QG  A VV       D           + V +T + L+  AS  YG    ++  +
Sbjct: 54  PQAYTQGCRAFVVE------DLPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ + ++ ++ G  +  +      +   ++    TTP P+ L      +
Sbjct: 108 GVTGTNGKTTVATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH   Q R+  +    G FTNL RDH+DYH +   Y  AK   F+ L
Sbjct: 168 ADAGCEYAFMEVSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              ++ A++ ADD      +    N   RV +   +    +  K+   H      + +  
Sbjct: 228 -GAQAFALVNADDKNG---LVMVQNTRARVCTYALKSMANYRAKIVERHIDG---MDMYM 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +    L G+F  YN L   G    +G D   VL  L +L  V GRF+   T+  G  
Sbjct: 281 DDREVFVRLVGDFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTF-TSKDGYV 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VDYAHT ++L  +L  IR +    ++I V G GG+RD+GKRPIM K A   ++  I+T
Sbjct: 340 AIVDYAHTPDALINVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILT 399

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR E+P++I  E+  G+        +   +R EAIRTA  +  K D +++AGKGHET
Sbjct: 400 SDNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459

Query: 472 VHIVTNGEKKMSVDCDII 489
              +  G K    D +++
Sbjct: 460 YQEIR-GVKHHFDDREVV 476


>gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
 gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
          Length = 506

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 152/500 (30%), Positives = 241/500 (48%), Gaps = 20/500 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F E++  ++   ++     +  V  DSR    G +FVA+ G   DG+ ++  A+  GA A
Sbjct: 3   FEEIVRGVTTLAVRLAPVDVRGVEYDSRRTGTGSLFVAMRGEATDGNRYVAVALKLGAVA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           ++  S    +D ++  RS+  + +V+  R+ L+  ++  +G   +   + AVTGT+GK++
Sbjct: 63  VLTDSPTVFEDLTS--RSDIGVALVEYGRRALAEVSANFFGHPEQVLKLCAVTGTNGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  ++ + +     S  +G   T +    + +  TTP    + +  +     G T   +
Sbjct: 121 TAFLIEGLLRSVSRKSVLLGTIETHVVENVRPSPHTTPESRDVLEIFAEGVRAGATEAVM 180

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAII 246
           E SSH L Q R+ G+ L    FTNL +DH+DYH T   Y  AK  +F  +       A+I
Sbjct: 181 EMSSHALVQERVWGLPLDVAVFTNLTQDHLDYHGTMGEYARAKALMFRGVGTLPPRIAVI 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFD 301
            ADD  +  +++ A         VG +    +  +  A   K      +  +     +  
Sbjct: 241 NADDPSAGMMVEAASGCEVWTYRVGAREFDENAYEFVADDVKLGAGWTEFALVTPMGERV 300

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   VYN + A    +A G+     +    +L  VPGRFE VG N  G  + VD
Sbjct: 301 VRSQLTGRVNVYNLVAAMATGMARGLSLDECVRGAAELLPVPGRFETVG-NDLGITVVVD 359

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAHT ++L  ++   R +   GR+I +FGCGGDRD+ KRP MG+ A D +D+ IVT DNP
Sbjct: 360 YAHTDDALRNLIGLARELVGEGRVITMFGCGGDRDRTKRPKMGRAAGDGSDLVIVTSDNP 419

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           RSEDP  I A+++ G+         + NR  AIR AI +    D++++AGKGHE   +  
Sbjct: 420 RSEDPAAIAADVLVGLQDTKAIVEVELNRHVAIRRAITVAKAGDIVLLAGKGHEREQVSR 479

Query: 477 NG---EKKMSVDCDIIREIL 493
            G         D    R  L
Sbjct: 480 QGSILVSVPFDDVMEARAAL 499


>gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 539

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 142/514 (27%), Positives = 244/514 (47%), Gaps = 39/514 (7%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      + +I  +  DSR +  G +FV + G K DG+ F  QAI +G
Sbjct: 10  LAELLDEARVTPVAVEGNLDIEITGIQHDSRLVIPGDLFVCVKGLKSDGYEFAHQAIEKG 69

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A AIV SS     +           +VV++T   LS  A   YG   +N+  + +TGT+G
Sbjct: 70  AVAIVSSSEVLPAEGLEAS------VVVEDTNILLSGLAGAFYGHPSKNLAVVGITGTNG 123

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ +  ++ I +  GL +  +G  +         +   TTP  ++L K ++ +   G  
Sbjct: 124 KATTSYLIRSIYEAMGLQAGLLGTINYYINGKKKLEATHTTPDAVHLQKHMASMVHHGTD 183

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKES 242
              +E SSH +   R   +      FTNL  D  D+H+++  Y  A  +LF +++ P++ 
Sbjct: 184 ACIMEVSSHAMHLGRCKEVDFDVAVFTNLTHDPEDFHKSEDEYKEASGKLFAKMVNPEKH 243

Query: 243 PAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             I+  DD  S   + +   +      ++G +   ++  +V     + ++ +     + +
Sbjct: 244 RKIVNIDDPQSDYFVTQGNQDVPVVTYAMGNKNADVYPLEVQLSLFESELLVRTPRGNLE 303

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   VYN L A  + IA+      ++  +E++  VPGR E +    +   + VD
Sbjct: 304 ISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELIDEE-QAFAVIVD 362

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +A+T + L  +L  +R     RII V G  GDRD+ KRP+M KIA D +D+ I T DNPR
Sbjct: 363 HANTPDGLSRLLDTVRECGPRRIITVLGSQGDRDKAKRPLMAKIATDKSDVCIFTSDNPR 422

Query: 422 SEDPEKIRAEIIHGIPGFIEK-----GN-----------------RIEAIRTAIEMLNKQ 459
           SEDP  +  +++ G+   +E+      +                 R  A+R  + M  + 
Sbjct: 423 SEDPLDVIDDMLAGVGWSMEEYCKWGEDDYYPPLPNGHRLFCYEIRTIAVRAGVAMGEEG 482

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D +V+AGKGH T  I+ +  K+   D +  RE L
Sbjct: 483 DAVVIAGKGHNTYEIIGDN-KEYFDDREECREAL 515


>gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
 gi|167017296|sp|A4XQR9|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
          Length = 487

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 154/481 (32%), Positives = 240/481 (49%), Gaps = 16/481 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL   P       I E++ DSR ++ G +F+A+ G ++DG + I  A+      
Sbjct: 1   MPMPLNQL--LPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAV----AR 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + A+  +  +     +  ++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 55  GAAAVAFEAEGAAPMHAESAVLVPVKGLAGQLSAIAGRFYGEPSRALHLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  + Q     G     +G   T      +  + TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLLAQALDLLGERCGIVGTLGTGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  ++     FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFA--WPNLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DDA+ +E+ ++AH++     S+     F++  +     +  +  +     +      L 
Sbjct: 233 LDDAFGRELAQQAHDSRLIGYSLSDASAFLYCSEAQFDDHGVRARLVTPRGEGVLRSNLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L   G  + +      +L+ L +L    GR + +G       + VDYAHT +
Sbjct: 293 GRFNLSNLLAVVGALLGMDYGLDEILKVLPQLQGPAGRMQRLG-GGDKPLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R    GR++ +FGCGGDRD+GKRP+M  +A  LAD+  VTDDNPRSEDP +
Sbjct: 352 ALEKVLEAMRPHVQGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRSEDPAQ 411

Query: 428 IRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I  G     +      R +AI   I      DVLV+AGKGHE    +T G +    
Sbjct: 412 IVADIRAGFCAPEQVQFIHGRGDAIARLIAQAEAADVLVLAGKGHEDYQEIT-GVRHPFS 470

Query: 485 D 485
           D
Sbjct: 471 D 471


>gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured
           Prochlorococcus marinus clone HF10-88F10]
          Length = 511

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 141/502 (28%), Positives = 247/502 (49%), Gaps = 22/502 (4%)

Query: 11  FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L++ + I P +   + +IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAE
Sbjct: 6   LHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A ++ SA   ++  A+I     +++ DN         +  + +      ++ VTGT+GK+
Sbjct: 66  AAIIGSA--AKERIASIDRERILVIEDNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++   ++ + ++ G  +   G        F++    TT     L K L+           
Sbjct: 124 TITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFAI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPA 244
           +E SSH + Q R+ G +  A  FTN  +DH+DYH   ++YF  K +LF    L  K+   
Sbjct: 184 LEVSSHSIAQKRISGCEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGIC 243

Query: 245 IIYADDAY----SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
           ++  DD +    S ++ KR+     ++    ++   F  +       +          + 
Sbjct: 244 VLNHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREK 303

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                PL GEF + NA+ A  +   +      + + ++     PGR E +  +       
Sbjct: 304 IQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDNDVSRS 363

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +L+D   
Sbjct: 364 LPTIIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQLF 423

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE 
Sbjct: 424 ITSDNPRSEEPQKIVNDILMGIKKRENITIEIDRFKAINESIKFANKKDIVLIAGKGHED 483

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ +       D  I  ++L
Sbjct: 484 YQILNDKVIN-FDDRKIAYKLL 504


>gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
 gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
          Length = 515

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 159/499 (31%), Positives = 242/499 (48%), Gaps = 21/499 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL++  +  P    +  +  ++ DSR +  G ++VA+ G +  G  F  QA A GA A
Sbjct: 15  LVELLSAQADGP-GLAKVAVTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAAAAGAVA 73

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           I    A   +       +  P+LV D+ R  L   AS +YG    ++  + VTGTSGK++
Sbjct: 74  IWTDPAGRHR----AAATGLPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGKTT 129

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               ++   + +G+ +  IG     I      + LTTP    L    + +   GV   ++
Sbjct: 130 TVYLLEAGLRAAGVDTAVIGTVEMRIGDTRLPSSLTTPEATDLHAIFAKMREVGVGAAAM 189

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L Q R+ G       FTNL +DH+DYH T   YF AK +LF     +     + 
Sbjct: 190 EVSSHALAQGRVGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPAYSRVGV--VN 247

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306
            DD Y +E+ + A        + G        + V    +     +   G  + D    L
Sbjct: 248 VDDGYGRELTRIAQVPLTTFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEADVSIQL 307

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V NAL A    +  G+   +    +  L  VPGR E +    +     VDY+H  
Sbjct: 308 PGPFNVANALAAIVALVEAGLPLQVAAAGVGTLTGVPGRLEPID-EGQDFTALVDYSHKP 366

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            ++E +L ++R +T+GR+IVV GCGGDRD+GKRP+MG+ A  LAD+A++TDDNPRSEDP 
Sbjct: 367 GAVEAVLTSLREVTAGRLIVVLGCGGDRDRGKRPLMGETAARLADVAVLTDDNPRSEDPL 426

Query: 427 KIRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            I A ++ G+           + + +R  AI  A+    + DV+V+AGKGHE    V  G
Sbjct: 427 AILAAMVEGVLKVPQAERAHLVVEPDRAAAIALALGRARRGDVVVIAGKGHEQGQYVA-G 485

Query: 479 EKKMSVDCDIIREILGLIL 497
                 D +++R  L  ++
Sbjct: 486 RVLPFDDREVVRAELRRLV 504


>gi|325662247|ref|ZP_08150862.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086048|ref|ZP_08335131.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471499|gb|EGC74720.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406971|gb|EGG86476.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 490

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 155/505 (30%), Positives = 237/505 (46%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E++          +E +I E+++DSR +  G +FV I G   DGH +I
Sbjct: 1   MKLTALLERLQYEVV-------QGTKEIEITELTNDSRKVTEGSVFVCISGAVSDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +   +GA A++V               +  ++ V++TR  L+L ++  +G   E   ++
Sbjct: 54  EEVGKKGAAAVIVEKDVEA-------PKHMTVIRVEDTRYALALASAAYFGYPAEQLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I +  G     IG   + I         TTP    + +    +
Sbjct: 107 GITGTKGKTTTTYMVKSILEEVGHKVGLIGTIEAIIGDEVIPAVNTTPESFTIHQYFRKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G   V +E SS GL  HR  GI    G FTNLG DHI    H+  + Y   K  LF 
Sbjct: 167 VDAGCDAVVMEVSSQGLMLHRTAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFR 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
           +        I   DD Y K+V + A            +                  V   
Sbjct: 227 QC----KIGIANVDDPYFKDVFREA-TCEIETFGFSEKADLRAEHAELVTRPGYLGVAYH 281

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V G  DFD    +PG F VYN+L A  +C    + S  + + L K+  V GR E V  + 
Sbjct: 282 VAGLMDFDVEIDIPGTFSVYNSLTAIAVCRHFNVPSEKIQKAL-KVAKVKGRIEMVKVSD 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ 
Sbjct: 341 E-FTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSKTRRYEMGEVSGRLADLT 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I+T DNPR E+P++I  +I  G+      ++E  +R EAIR AI      DV+V+AGKGH
Sbjct: 400 IITSDNPRFEEPQEIIDDIKIGMKKTDGAYVEICDRKEAIRYAIVNGQPGDVIVLAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    +  G K    + D+I +IL 
Sbjct: 460 EDYQEIK-GVKYAMDERDLIADILA 483


>gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 495

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 230/476 (48%), Gaps = 18/476 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  +  DSR +  G  FVAI G    G  F+ QA A GA A++             +
Sbjct: 19  DVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEPPAP---NGMPV 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++   + V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G  +
Sbjct: 76  PADA--IAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQAMTLLGTPT 133

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF         A++  DDA+ + +     + 
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTR--AGLKAAVVNLDDAFGRTLFASL-DP 250

Query: 264 GCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             R + V  + +       + +   HN     ++++G+      PL G F V N L  AG
Sbjct: 251 ALRAIGVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAG 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+  
Sbjct: 311 ALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHA 370

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
             R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPRSED + I A+I+ G     
Sbjct: 371 QDRLICVFGCGGERDTGKRPQMAVIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPD 430

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             I + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 431 AAIVQRDRAAAIHQAIGMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|218886062|ref|YP_002435383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757016|gb|ACL07915.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 494

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 166/478 (34%), Positives = 247/478 (51%), Gaps = 19/478 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNK------EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           E+ +DSR +  G +FVA+ G         DG  FI +A A GA A+V   A  ++   A 
Sbjct: 19  EIRTDSRKVGRGDVFVAVPGVAANGGAGVDGADFIVKAWAAGAGAVVCLPA-RVEAALAD 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                 +   D+ R  + L     YG    P  ++AVTGT+GK+++   +  +    G  
Sbjct: 78  APEGAVVAAHDDPRVAIGLLGQARYGTDALPFPVVAVTGTNGKTTITYLLDHVFSALGRR 137

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G  S     FA D  LTTP  I     L  +   GV    +E SSH LDQ R+ GI
Sbjct: 138 AGVLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALMEVSSHALDQRRVAGI 197

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TNL +DH+DYH   + Y+ AK RLF EL   +    + ADDA+ + ++    +
Sbjct: 198 RFAGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAVNADDAWGRRLLGEVPH 257

Query: 263 AGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A    L  G      +F+H + V    +   + ++ EG+ ++    L G     N L   
Sbjct: 258 AIGFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELSSHLVGAHNASNLLAVQ 317

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +C+ +G+        L     VPGR E +  N RG  I+VDYAHT ++LE +L+ +R +
Sbjct: 318 AVCLGMGLAPQ-DFASLAGFTGVPGRLERI-VNPRGLDIFVDYAHTPDALENVLRALRAV 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
              RI+ VFGCGG+RD+ KRP+MG+     AD+A++T DNPR EDPE I A+++ G+ G 
Sbjct: 376 GFSRIVTVFGCGGNRDRTKRPLMGQAVARHADVAVLTSDNPRHEDPEAIMADVLPGLAGA 435

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +   +R  AI  A+ +L   DVL+VAGKGHE+   + + +   S D  +IREILG
Sbjct: 436 RKVVSDADRARAIGKALALLQPGDVLLVAGKGHESYQQIGDRKVPYS-DQQVIREILG 492


>gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 511

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 140/502 (27%), Positives = 242/502 (48%), Gaps = 22/502 (4%)

Query: 11  FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L++ + I P +   + KIN +S +S+ +Q G +F+ + G   DG  +  +AI  GAE
Sbjct: 6   LHKLLDLVGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A ++ SA   +  S  I     +++ DN         +  + +    +  + VTGT+GK+
Sbjct: 66  AAIIGSAAKQKIGS--IDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++   ++ + ++ G  +   G        F++    TT     L K L+           
Sbjct: 124 TITFLLEYLLKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPA 244
           +E SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+  +
Sbjct: 184 LEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGIS 243

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLS-----VGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  DD +  ++          V +        +  F  +       +          + 
Sbjct: 244 VLNIDDPWISKLSFDLEKGSSLVSTKITDSEFEKDDFFFVTDKKFTESGSTCIFHTPREK 303

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                PL GEF + NA+ A  +   +      + + ++     PGR E +  ++      
Sbjct: 304 IKLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNDDVSSL 363

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + L+ +LK+I+ +  G++I VFGCGGDRD  KRP+MG IA + +D   
Sbjct: 364 LPTLIVDYAHTPDGLKKVLKSIKKLCEGKLITVFGCGGDRDCSKRPLMGSIAAEFSDHLF 423

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPRSEDP+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE 
Sbjct: 424 ITSDNPRSEDPQKIVNDILMGIEKRDQITIEIDRFKAINESIKFANKEDIVLIAGKGHED 483

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ +       D  I  ++L
Sbjct: 484 YQILNDKVID-FDDRKIAYKLL 504


>gi|317484858|ref|ZP_07943750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
 gi|316923904|gb|EFV45098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
          Length = 482

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 246/488 (50%), Gaps = 23/488 (4%)

Query: 21  FPMQWRERKI----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +P+   E ++     E+  DSR    G +FVA+ G+  DG  FI  A+A+GA  +V    
Sbjct: 2   YPLSLLESRVAAQGMELCIDSRKATPGCVFVALPGSSADGSQFIADAVARGAGYVVCRPE 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQ 134
            +     A +          + R+ L L A   YG    P  ++ VTGT+GK++    + 
Sbjct: 62  SAGNCGEAEVVD------CADPRQALGLLARARYGTASLPFPVVGVTGTNGKTTTTYLLD 115

Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +   +G  +  +G  S       +D  +TTP  + +   L+ + + GV    +E SSH 
Sbjct: 116 HLFASAGKKTGVLGTVSYRWPGHHEDAPMTTPDCLDVHTMLADMRAAGVDMAFMEVSSHA 175

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF---EELLPKESPAIIYADD 250
           LDQ+R+ G+      F+NL +DH+DYH   + YF AK +LF   +     +    I  D+
Sbjct: 176 LDQNRVAGVGFGGAVFSNLTQDHLDYHHDMETYFKAKAKLFLDGDGKPFADRVMAIGTDN 235

Query: 251 AYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            +   +   A  A    L+  G  G+++  K + +     ++    EG++++F  PL G 
Sbjct: 236 PWGARLAGMAPEAIGFGLTASGASGRYLEGKVLSSTTAGLRLHARFEGREWEFTSPLVGN 295

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           +   N L    + +  G+D        E    VPGR E +  N +   ++VDYAHT ++L
Sbjct: 296 YNAENLLAVQAVALGFGLDPE-AFRCFETFCGVPGRLERI-LNPQNLDVFVDYAHTPDAL 353

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L  +R     RI+ VFGCGG+RD+ KRP+MG+    L+D+A++T DNPR E+PE I 
Sbjct: 354 INVLNALRGAGFKRIVTVFGCGGNRDRAKRPLMGEAVARLSDVAVLTSDNPRHEEPEAIM 413

Query: 430 AEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+++ G+ G  E     +R  AI   +E+L+  D L++AGKGHE+   + +  K    D 
Sbjct: 414 ADVMPGLSGAAEVFADPDRRRAIEKGLELLHPGDALLIAGKGHESTQQIGD-VKHPFSDQ 472

Query: 487 DIIREILG 494
             +REILG
Sbjct: 473 QTVREILG 480


>gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
 gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
          Length = 533

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 149/529 (28%), Positives = 237/529 (44%), Gaps = 48/529 (9%)

Query: 1   MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           ++L   + K    L+N Q      Q    +++ +  DSR I+ G +FVA  G+  DG  +
Sbjct: 5   LQLTTALKKIIKPLVNEQFWKDNPQAAMTEVSGIQLDSRQIKPGQLFVAYPGHATDGRQY 64

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSN-----------------------TPILVVD 96
           I QA+  GA  ++     S       +  N                         ++ V 
Sbjct: 65  IKQAVDGGATVVLFEQNDSETILETLLNDNQQVAASAQTLSGVAPLGLYNYKEAVLIPVK 124

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           N    +S  A+R YG  P N ++V G +G +   S    + Q      +     STI + 
Sbjct: 125 NLSSQVSHIAARFYGN-PTNKMSVVGVTGTNGKTSCAYLMAQALEFLQYPTLMLSTIGNG 183

Query: 157 AQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                     TTP  I + +  +   ++   H+++E SSHGL Q R+  ++     FTNL
Sbjct: 184 NPSKLQATENTTPDAIAIQRLAAEYLARKNYHMTMEVSSHGLVQSRVAAVQYKIAVFTNL 243

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            +DH+DYH   ++YF AK +LF     +   A+I ADD Y + ++       CR ++   
Sbjct: 244 SQDHLDYHSDMESYFQAKRQLFIR--EELEAAVINADDEYGRRLLTD-DAVACRKIAFSC 300

Query: 273 QGK--------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           + K        +I  K +       Q  +            L G F + N L  A     
Sbjct: 301 EQKNEDLNIENWIVAKNLTFNMRGIQAELHTPWGASKLRSGLLGHFNLSNLLAVAASLGE 360

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +  D    +  L     VPGR +    +S+   + VDYAHT ++L+  L ++R   +G +
Sbjct: 361 MFGDIDKWIVALNAAKAVPGRMQNFTASSK-ATVVVDYAHTPDALDKTLTSLREHCAGEL 419

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FI 440
             +FGCGGDRD  KRP+MG +A   A+  I+TDDNPR+E  E+I + I  G+      +I
Sbjct: 420 WCIFGCGGDRDNTKRPLMGAVAEQKANRVIITDDNPRTESSEEIVSMIRSGMKDQSTQYI 479

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +K  R EAI  A++     D+++VAGKGHE    + N +   S D + +
Sbjct: 480 QK--RKEAIEFALKHSTPNDIILVAGKGHEDYQQIGNKKVHYS-DLETV 525


>gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
 gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
          Length = 484

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 158/488 (32%), Positives = 250/488 (51%), Gaps = 23/488 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +IN        +++  +  +S +S+ ++   +F  I G   DG+ FI  A+++GA  ++ 
Sbjct: 3   IINMSHNLKQLFQQHNVKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDALSKGAVLVIT 62

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +  ++            ++ V + +  L       Y K P+N++AVTGT+GKSSV S++
Sbjct: 63  DNKKNIVIDK--------VIYVKDVQAALYEAIEIFYPKTPKNLIAVTGTNGKSSVVSYI 114

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVE 188
            Q     G  +  IG          +     P    L      K    L+  G+ ++  E
Sbjct: 115 AQTYSLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +
Sbjct: 175 ASSHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNS 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D    + V    HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G
Sbjct: 235 DIEEIEFVKDYLHNHNIKFITVGKKGDL-EITRINGSLKGQNINFTFNNREYNFNTPIIG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  N L+A       G     V++ L ++  V GR E +        I+VDYAHT ++
Sbjct: 294 SFQASNLLIAVLSIHYTGFAFDDVIDSLVEVKAVKGRMERI----DNTHIFVDYAHTPDA 349

Query: 369 LEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           L   L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR+EDP+
Sbjct: 350 LAKALTELKNIKLRGSKLSVVFGCGGNRDKAKRSLMGQIAAKHADTIIITDDNPRNEDPK 409

Query: 427 KIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
            IRAEII GI    + E  NR EAI+  I  L + D L+VAGKGHE   I+ + +K    
Sbjct: 410 LIRAEIISGIEKADYTEIANREEAIKYGINNLKQDDTLLVAGKGHENYQIIGD-KKLPFD 468

Query: 485 DCDIIREI 492
           D +++R+ 
Sbjct: 469 DAEVVRKC 476


>gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
          Length = 485

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 153/471 (32%), Positives = 241/471 (51%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSF 145
             N   +++D+ R  L   AS  Y + P+  L + G +G +   S    + +  G     
Sbjct: 73  --NVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPIT 129

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG     I     +   TTP  + L K       + + +V +E SSH L+  R++ +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVEVVDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF +L    + ++I  DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDVNNSVINIDDEYGKRLYDEFIVDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G     +    +   +    + I  + +     F L G+F +YN L A G+ + 
Sbjct: 249 SEIISYGIDSGDLEGDYLDDGY----IDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
           IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +  R
Sbjct: 305 IGISMEEILKRVSTIKAAPGRFEALDC-GQNYKVIVDYAHTPDALVNVIVAARNIKNVNR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           II +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  G      + 
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGFIKSDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|58583453|ref|YP_202469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625265|ref|YP_452637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75434163|sp|Q5GW37|MURE_XANOR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123521000|sp|Q2NZB4|MURE_XANOM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|58428047|gb|AAW77084.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369205|dbj|BAE70363.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 495

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 228/476 (47%), Gaps = 18/476 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR +  G  FVAI G    G  F+ QA A GA A++             +
Sbjct: 19  DVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPA-----PDGL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G  +
Sbjct: 74  PVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF    P    A++  DD + + +   + + 
Sbjct: 194 FDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTR--PGLKAAVVNLDDGFGRTLFA-SRDP 250

Query: 264 GCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             R + V  +         + +   HN     ++++G+      PL G F V N L  AG
Sbjct: 251 VLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAG 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+  
Sbjct: 311 ALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHA 370

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
             R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G     
Sbjct: 371 QDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARPD 430

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             I + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 431 AAIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
 gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
          Length = 507

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 161/510 (31%), Positives = 253/510 (49%), Gaps = 20/510 (3%)

Query: 1   MKLQDLIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK     +K+  +  + L+I     +  + +I  ++ +S+ ++  +IFVAI G K+DGH 
Sbjct: 1   MK----YFKNLIKGYDNLNIKEITKESLKLEIKSIAYNSKLVKKNYIFVAIKGLKDDGHK 56

Query: 59  FIPQAIAQGAEAIV--VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           +I  AI   A  I+  +S+  S  +       N   +   N R+ L+  +++LY +  + 
Sbjct: 57  YIESAIKNKASIIIYDISADKSFINSLKEKYKNVCFVGSKNPRETLAYMSAKLYDEPTKK 116

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
           +  +A+TGT+GK++ +  ++   + +      IG     I        LTTP  + L   
Sbjct: 117 MHSIAITGTNGKTTTSYLLKAALESAKNKIALIGTIKNMIGKSEIKTNLTTPESVDLENI 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 + V+H+ +EASS  L   R D I   A  FTNL  DH+DYH   + Y  AK++L
Sbjct: 177 FDKAYKKNVSHIVMEASSQALAMDRCDYINYDAAIFTNLTEDHLDYHIDMKNYLKAKLKL 236

Query: 234 FEELLPKESP---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-Q 289
           F  L         AII     Y KE+         ++++ G   K  +  K+  +++K  
Sbjct: 237 FSLLKQSSKKKKLAIINISTDYFKEIKNYIKKLDLKMVTYGLNEKADYYAKIITLNSKYS 296

Query: 290 QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +     +GK        L GEF V N+L          +D   V++ + K+  V GRFE 
Sbjct: 297 EYEFYAKGKFISKVKLSLLGEFNVVNSLSVLAYAYEYKLDIEKVIKAIRKVQ-VSGRFEI 355

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V        + VDY+HT +SLE IL   R +   R+IVVFGCGGDRD+ KRPIM  IA  
Sbjct: 356 VSGEKCPFIVAVDYSHTPDSLENILVESRKLKPNRVIVVFGCGGDRDRKKRPIMASIAEK 415

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            ADI+I+T DN R+E  E+I ++I +G     + +  +R EAI  AI+   + D++++AG
Sbjct: 416 YADISILTTDNQRTESIEQIMSDIENGFTHSNYKKIIDRKEAIFEAIKEAKENDIVIIAG 475

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           KGHET  I  +       D ++ RE L  I
Sbjct: 476 KGHETYQIFPDKTIH-FDDTEVAREALSNI 504


>gi|215482065|ref|YP_002324247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851363|ref|ZP_08433415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332868774|ref|ZP_08438397.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
 gi|213987659|gb|ACJ57958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730079|gb|EGJ61407.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332733203|gb|EGJ64400.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
          Length = 500

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 151/490 (30%), Positives = 236/490 (48%), Gaps = 39/490 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAI-------VGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           QW ++  +  S DSR ++ G IF+A+                F   A+A GA A++  + 
Sbjct: 16  QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTF----FAEAALANGALAVISETE 71

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  
Sbjct: 72  LGVAN----------EWVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRL 121

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++          +G T   I      +  TT   + L  AL   + QG T  S+EASS
Sbjct: 122 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA
Sbjct: 182 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDDA 239

Query: 252 YSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ++  +++ A N   +      S+       ++  +          +  +   F    PL 
Sbjct: 240 HADLMIESAQNNPAQPKILTYSLTQNTADYYITDLNYSLAGATFNLVSQQGSFAVESPLL 299

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT +
Sbjct: 300 GHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPD 357

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+
Sbjct: 358 ALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 417

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I A++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +   
Sbjct: 418 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWF 476

Query: 484 VDCDIIREIL 493
            D   +R  +
Sbjct: 477 DDVVEVRSAI 486


>gi|78046382|ref|YP_362557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034812|emb|CAJ22457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 491

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 153/487 (31%), Positives = 230/487 (47%), Gaps = 16/487 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL        + +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++  
Sbjct: 3   LSQLLPDVALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                      +      + V   R  L + A + +G+  +   ++ VTGT+GK+S    
Sbjct: 63  PPA-----PDGLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQL 117

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  +G     +   A     TTP  +     L+ L  +G   V++E SS
Sbjct: 118 LAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+D +      FTNL RDH+DYH     Y  AK +LF         A++  DD 
Sbjct: 178 HALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTR--AGLKAAVVNLDDG 235

Query: 252 YSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + + +      A     V S  +    +  + +   HN     ++V+G+      PL G 
Sbjct: 236 FGRTLFAALDPALRAIGVSSRAHADASVSAQALQLDHNGINFALNVQGQVHPVHSPLLGR 295

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L  AG   A+    A +   L +L  + GR   +G       + VDYAHT ++L
Sbjct: 296 FNVDNLLAVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDAL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L ++R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I 
Sbjct: 356 EQALSSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIV 415

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G       I + +R  AI  AI M +  D++++AGKGHE    +  G +    D 
Sbjct: 416 ADILRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEIA-GVRHAFDDA 474

Query: 487 DIIREIL 493
            +  + L
Sbjct: 475 LVAAQAL 481


>gi|91977865|ref|YP_570524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684321|gb|ABE40623.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 490

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 210/488 (43%), Positives = 279/488 (57%), Gaps = 15/488 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   D P         P    +  +  ++ DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLRDLFSDDAP---IDAQGSPRGAADLDVGGLAVDSRAVKPGDLFFALAGAKTDGARFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    AI   +     D +       P + + N R+ L+L A+R Y + P  I AV
Sbjct: 58  A-------AAIAAGAVAVAGDHAPDGELAVPFVPLGNPRRALALAAARFYSRQPRTIAAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F + I QR G ++  IG    ++ + +    LTTP PI L ++L  ++ 
Sbjct: 111 TGTSGKTSVAAFTRHIWQRLGHAAASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAG 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +L+ 
Sbjct: 171 EGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVI 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296
               A+I AD   S +V+  A   G R+++VG  G     I L +       Q++TI   
Sbjct: 231 DGGAAVISADHDCSAQVIDAARARGLRLITVGRNGDAGEGIRLIEASIDGFAQKLTIEHA 290

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+      PL GEFQ+ NALVAAGL I  G D A     L+ L   PGR +FVG   RG 
Sbjct: 291 GRRTAVHLPLVGEFQIENALVAAGLVIGAGGDPAAAFAALDHLEGAPGRLDFVG-ERRGA 349

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA   AD  IVT
Sbjct: 350 PVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAGNADSIIVT 409

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRA I+   PG  E G+R EAIRTAI  L   D L++AGKGHET  IV 
Sbjct: 410 DDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIRTAIAALAPGDALLIAGKGHETGQIVR 469

Query: 477 NGEKKMSV 484
           +     S 
Sbjct: 470 DTVLPFSD 477


>gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 482

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 145/492 (29%), Positives = 230/492 (46%), Gaps = 35/492 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +++        +  V+ DSR +Q G+++VA+ G + DGH FIP A+ +GA AIV      
Sbjct: 12  ALYRAPGPPHPVKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDAVQRGAVAIVGEEPLE 71

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI 136
                       P L V + R+ LS  A+  YG     +  + VTGT GK++ +  V  +
Sbjct: 72  ---------PGVPYLRVPDARRALSRLAAAFYGFPSTRLFVIGVTGTDGKTTTSCLVHHL 122

Query: 137 CQRSGLSSFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             R+G  +  I   G      +   +   TTP    +  AL+ +  +G+TH  +E SSH 
Sbjct: 123 LTRTGRGAGLISTVGLRYGEETRLLEGHFTTPEAPEVQAALAEMVRRGLTHAVLETSSHA 182

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L QHR+  +      +TNL  +H+D+H + +AYF AK      L+ +   +I+ A   Y+
Sbjct: 183 LAQHRVADVAYDLAVWTNLSPEHLDFHGSLEAYFQAKA----ALVNRAGFSILNAGCPYA 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +  R H       + G Q       +V    +  + T+   G   +   P+ G + V 
Sbjct: 239 MRLTHRPHT------TYGVQAGAYRAVRVRESTDGLRFTLEAPGFTGEAFLPMIGRYNVE 292

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A       G+     L  L +   VPGR + +   +   R  VD+AHT  +L   L
Sbjct: 293 NALAALAAAHRAGVPLEEALPALARFSGVPGRMQIL--QAHPIRAVVDFAHTPKALAKAL 350

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R  T GR+IVV G  G+RD  KR  +G+ A+ LAD A+ T+++ RSED   I  E+ 
Sbjct: 351 TALRPTTPGRLIVVIGAAGERDPAKRAPLGRTAVTLADFAVFTEEDARSEDVHAILQEME 410

Query: 434 HGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G           +  K +R +AIR A+ +    D +V AGKGHE      +       +
Sbjct: 411 RGAREAGGVRGTHYALKPDRRDAIRYALSLARPGDTVVFAGKGHERTLERADETLPW-DE 469

Query: 486 CDIIREILGLIL 497
            + +R+ LG+ +
Sbjct: 470 AEEVRKALGIAI 481


>gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
 gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
          Length = 506

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 147/511 (28%), Positives = 238/511 (46%), Gaps = 26/511 (5%)

Query: 3   LQDLIYKDFPELINQL------SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           + D  +K+F  L  +L              +  I  +S DSR+I+ G  F+ I G++ DG
Sbjct: 5   ISDNAFKEFNMLAGELLSYIKVKKICGDIEKIDIKYISEDSRNIKEGTAFICIEGSRVDG 64

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           HLF+  A   GA   + S   + +        + P++ V +T K ++L ++ LYGK  E 
Sbjct: 65  HLFVEGAKKNGAGLFIASKDIADK------AGDIPVVYVKDTLKVMALLSNVLYGKPDEK 118

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
           +  + +TGT+GK++ +  +  I +   L +  IG     I       + TTP    L   
Sbjct: 119 LFMVGITGTNGKTTTSYLINHIFETMNLKTGLIGTIHHKIGKKIIPTKNTTPVSATLQGL 178

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  ++++      +E SSH L   R+ G       FTNL  +H+D H+T   Y + K  L
Sbjct: 179 LEEMAAEKCDACVMEVSSHALALDRVIGCDFDCAVFTNLSHEHLDLHKTMGNYAHTKELL 238

Query: 234 FEELLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           F +L       K   A++  DD YS+E  K    A      +  +    +  K+     K
Sbjct: 239 FTQLGHNLKNGKLKTAVLNIDDKYSEE-YKAHTPAEVITYGIDDKTADFYADKIFFDDWK 297

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +   G  +     L G F VYN L A     A GI     +E L+    V GR E 
Sbjct: 298 MRFDLHFLGDVYKVETNLVGLFNVYNVLAAICTAFAKGIAVRDAIEALKSFSGVSGRMET 357

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIAL 407
           V T  +  +I +D+AHT + L  +L+ +  +   RII + G  GG+RD   RP +G+IAL
Sbjct: 358 VHT-DKNYKIIIDFAHTPDGLMKVLETLNKVPHNRIITLIGHSGGNRDSSMRPDLGRIAL 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + +D  + T DNPR+E  E I   ++       +    +R EAI  A  +  + D++++A
Sbjct: 417 ENSDEVVFTADNPRNESVEHIVEGLVSDCAKTNYTVIEDRKEAIEYAFGIAGENDIVLLA 476

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GKG E   ++ + E     + + ++EILG I
Sbjct: 477 GKGAEPYQVIGD-EYLPYSEIETVKEILGRI 506


>gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 573

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 144/496 (29%), Positives = 234/496 (47%), Gaps = 24/496 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  +L   P +  +  +  ++ DSR ++ G ++ A+ G +  G  F  QA + GA A
Sbjct: 66  LGELAARLGAAPQESGD--VTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAVA 123

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++   A + +       +  P+LV ++ R  +   A+ +YG+   ++L   +TGTSGK++
Sbjct: 124 VLTDPAGAER----AAATGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTT 179

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G S+  IG     I      +  TTP    L    + +  +GV  V++
Sbjct: 180 TAYLVEGGLRGAGRSTGLIGTVEMRIGDDRIKSERTTPEATDLQALFAVMRERGVEAVAM 239

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF     +     + 
Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPRRSRLGV--VN 297

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306
            DD Y + ++  A        + G+         V       + T +  +G+      PL
Sbjct: 298 FDDEYGRRLIDEASVPVVTFSAEGHPDADWRAADVEVGPQDSRFTVLGPKGERITARAPL 357

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       G+D     + +  +  VPGR E V    +     VDYAH +
Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQTAADGVAAVPGVPGRLERVDA-GQPYLAVVDYAHKT 416

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+++R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 417 DAVESVLRSLRKVTEGRVHIVLGCGGDRDVTKRGPMGAAAARLADTAVLTSDNPRSEDPL 476

Query: 427 KIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I A ++ G    +    R + +           A+      D ++VAGKGHE    + +
Sbjct: 477 AILAAMLSGAAE-VPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHEQGQDI-H 534

Query: 478 GEKKMSVDCDIIREIL 493
           G  +   D  ++RE +
Sbjct: 535 GVVRPFDDRQVLREAI 550


>gi|271502047|ref|YP_003335073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
 gi|270345602|gb|ACZ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
          Length = 494

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 171/495 (34%), Positives = 249/495 (50%), Gaps = 13/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +     ER + E++ DSR   AG +FVA+VG+K DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDVLAPWVNDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +  +  D + T     P++ + +  + LS  A R Y +      ++ VTGT+GK++ 
Sbjct: 64  VAQADDATPDGTLTEMHGVPVIYLAHLNQRLSALAGRFYRQPSTALQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +      +  TT S + + + LS L  QG    ++E
Sbjct: 124 TQLLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR++ +   A  FTNL RDH+DYH     Y  AK RLF E   +    +I A
Sbjct: 184 VSSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAE--HQVGQKVINA 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           DD   +  + R  +A    ++        +++    +    +   V              
Sbjct: 242 DDEVGRRWLSRLPDAVAVSVAGSVDSSRARWLKATHIDYHDSGFTVQFDSSWGAGAINSR 301

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF V N L+A    +++G     ++E    L  V GR E    + R   + VDYAHT
Sbjct: 302 LMGEFNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLASGR-PTVVVDYAHT 360

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L   R    G +  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSEDP
Sbjct: 361 PDALEKALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDP 420

Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I  +I+ G+           R EA+ +A+      DV++VAGKGHE   +V N     
Sbjct: 421 QAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERLDY 480

Query: 483 SVDCDIIREILGLIL 497
           S D   +  +LG+I+
Sbjct: 481 S-DRITVARLLGVIV 494


>gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 497

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 152/499 (30%), Positives = 235/499 (47%), Gaps = 28/499 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L DL    F      L  +   W + ++ + + SDSR ++ G +F  + G   DGH FI 
Sbjct: 9   LDDLKRAGF------LLGWGGDWNDLKETSRLCSDSRLVKPGDVFACVCGRHFDGHSFIM 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           + +  G    ++       D           + V + R  +   A+RL G   + +  +A
Sbjct: 63  EGLRLGVAGFMIERPTDGLDN---------WIQVTDVRAAMGFLAARLAGSPCDRLKMVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GKS+ +  ++ +    G+ +  IG               TTP    L +    + 
Sbjct: 114 VTGTNGKSTSSYMIRSVLSACGIKTGLIGTVVYHDGDKETVADRTTPESTALQRLYESMI 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G     +E SSHGL Q R+ G       FTNL  +H+DYH T + YF AK  LF E L
Sbjct: 174 ANGCGACVMECSSHGLVQGRISGSTYDGALFTNLSPEHLDYHGTMEEYFAAKSLLFTEHL 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +   +   D + +++  R  ++    L  G   + +   ++          + V+G+
Sbjct: 234 KPNAVISVNGCDPWGQKLAARFPSSLTWGLGDGADVR-VKADRLTMKAGGSDFDLQVDGQ 292

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+ G F V NAL AA LCI +G     V++ LE +  VPGR E +   S G  
Sbjct: 293 FLGRVALPMTGRFNVENALGAASLCIGLGCSPEAVVKGLETMPQVPGRMERINL-SNGVT 351

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VD+AHT  +L  +L  +R +   R+I VFG GG+R  G RP +GKIA   AD  IVT 
Sbjct: 352 VIVDFAHTEIALTNLLATLRPLA-KRLISVFGHGGERFAGARPELGKIAGQTADRVIVTM 410

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP +I   I+ G+ G    F    +R +A+  A++   + DV+V++GKG E   
Sbjct: 411 DNPRNEDPAEIARAIVAGLEGGKASFSTVLSRRDAVFAALDEAERGDVVVISGKGAEPYL 470

Query: 474 IVTNGEKKMSVDCDIIREI 492
            +  G K    D D++ E 
Sbjct: 471 EIK-GVKYPYSDRDVVGEW 488


>gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis
           HAW-EB4]
          Length = 488

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 161/498 (32%), Positives = 238/498 (47%), Gaps = 21/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++DL+   F               E + +E++ DSR +Q+G +FVAI G + DG  FI
Sbjct: 1   MLIRDLLAPWF----------HYSGAE-EFSELTLDSRAVQSGSLFVAIPGYQVDGRKFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILA 119
             A  +GA A++V +    +       +   IL     R+  +L A      +    I+ 
Sbjct: 50  TAAFERGASAVLVHTDSPEEHGKLVHEAGLQILFFQLNRQISALAAQAYPLSQVRPQIIG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+SV   + Q+    G  +  +G     +     D+  TT  PI L K L    
Sbjct: 110 VTGTNGKTSVTQLIAQLQLLQGKQTAVMGTLGNGLWGELVDSGNTTADPITLIKQLQNFE 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G    ++E SSHGL Q R++ +      FTNL RDH+DYH T  AY  AK RLF+   
Sbjct: 170 QRGADTCAMEVSSHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMDAYGAAKKRLFQFAT 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +    +I  DDA  +E +    +      S+ G     I+ K           T+    
Sbjct: 230 LRAG--LINCDDALGREWLTDLASDKVIGFSIKGDSKAAIYCKDCHFHDGGVSCTLVWPT 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     PL G+F + N L A G    +G D   ++   EKL  V GR E   T      
Sbjct: 288 GEAKLNSPLLGDFNLSNLLAALGALYLLGEDMHALVALAEKLEPVAGRMERFTTKDE-VT 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +++E  LK +R    G++  VFGCGGDRD+GKRP+M   A   AD  +VT 
Sbjct: 347 LVVDYAHTPDAIEQALKALRVHCKGKLWCVFGCGGDRDRGKRPMMAASAEQFADRVMVTS 406

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DN RSEDP  I A+I+ G+      + + +R  AI+  +      D++++AGKGHET   
Sbjct: 407 DNSRSEDPNAIIADILAGLQHPKNALTQVDRQTAIKDVVAQAVAGDMVLLAGKGHETYQE 466

Query: 475 VTNGEKKMSVDCDIIREI 492
           + NGE+    +    + I
Sbjct: 467 I-NGERLNYDERAFAKAI 483


>gi|239907968|ref|YP_002954709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797834|dbj|BAH76823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
          Length = 488

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 158/471 (33%), Positives = 250/471 (53%), Gaps = 16/471 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR   +G +FVA+ G+++DG  ++  A+ +G   +V +  + L   +        
Sbjct: 24  DVAADSRRATSGGVFVAMAGSRDDGARYVADALEKGVAFVVAAPGHDLPAGTTA-----R 78

Query: 92  ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++ VD+ +  L   A+  +G       ++AVTGT+GK++V+  ++++ Q +G +   +G 
Sbjct: 79  LVAVDDPQAALGALAAARFGTETMAMPVVAVTGTNGKTTVSYLIERLAQAAGHTVGVLGT 138

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +        D  LTTP  + + + L+ ++  G T   +EASSH LDQ RL G+   A +
Sbjct: 139 VAYRWPGVVHDATLTTPDCLAIHENLAAMARSGCTLAVMEASSHALDQDRLAGLSFAAAA 198

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+    YF AK +LF   L +   A+   DDA+  +++     A    L
Sbjct: 199 FTNLTQDHLDYHKDMAVYFEAKAKLFRRYLARAETAVFNFDDAWGLKLLHEFPQAIGYGL 258

Query: 269 SVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +V   G    L      H    Q +  +     +    PLPG     N L A G+ +A+G
Sbjct: 259 TVPPTGFGRLLSGHVQHHGREGQDILAAYGDDSYAVATPLPGRHNAQNVLAACGVALALG 318

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             +      L   H  PGR E +  N  G  ++VDYAHT ++LE +L   R  T+GR+ V
Sbjct: 319 WPAE-TFAALADCHGAPGRLERIP-NPSGRAVFVDYAHTPDALENVLSAAREFTAGRLFV 376

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443
           VFGCGG+RD+ KRP+MG     LAD+A++T DNPR EDP  I  ++  G+      I + 
Sbjct: 377 VFGCGGNRDRAKRPLMGAAVARLADVAVLTSDNPRHEDPLAIIEDVKPGLKKARRAILEP 436

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +R  AI  A+  +  +DVLV+AGKGHET   + +  K    D  ++RE+ G
Sbjct: 437 DRRRAIELALSEMRPEDVLVIAGKGHETYQQIGD-VKYPFSDAVVVRELTG 486


>gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. AS9601]
          Length = 511

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 136/502 (27%), Positives = 239/502 (47%), Gaps = 22/502 (4%)

Query: 11  FPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L++ + I P     +++IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAE
Sbjct: 6   LHKLLDLVGIIPSSNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A ++  A   +  S  I     +++ DN         +  + +    +  + VTGT+GK+
Sbjct: 66  AAIIGPAAKQKIGS--IDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++   ++ + ++ G  +   G        F++    TT     L   L+           
Sbjct: 124 TITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFAI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPA 244
           +E SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+   
Sbjct: 184 LEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGIC 243

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLS-----VGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  DD +  ++          V +           F  +       +          + 
Sbjct: 244 VLNHDDHWISKLSSDLKKRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREK 303

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                PL GEF + N + A  +   +      + + ++     PGR E +  +       
Sbjct: 304 IQLFVPLVGEFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSRS 363

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +L+D   
Sbjct: 364 LPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQLF 423

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPR+E+P+KI  +I+ GI      I + +R +AI  +I+  NK+D++++AGKGHE 
Sbjct: 424 ITSDNPRTEEPQKIVNDILMGIKKREKIIIEIDRFKAINESIQFANKKDIVLIAGKGHED 483

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ +       D  I  ++L
Sbjct: 484 YQILNDKVIN-FDDRKIAYKLL 504


>gi|299768539|ref|YP_003730565.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
 gi|298698627|gb|ADI89192.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
          Length = 499

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 230/488 (47%), Gaps = 34/488 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           QW ++  +  S DSR +Q+G IF+A+       K     F   A+A GA AI+  +   +
Sbjct: 16  QWSQQPFHGFSLDSRKVQSGQIFIALTSYSQPEKT--RAFAESALANGALAIISETELGV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQQ 135
            +            V  + R+ +  +  R         P  I+AVTGT+GK++++  V +
Sbjct: 74  AN----------EWVCPDVRQRMGEWQERYLQHIDPVTPARIVAVTGTNGKTTISRLVAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          +G T   I      +  TT   + L  AL   + QG T  S+EASSHGL
Sbjct: 124 LISSQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF         A+I  DD ++ 
Sbjct: 184 EQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FNSLKVAVINLDDEHAA 241

Query: 255 EVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++  A     +      S+       ++  +          +      F    PL G F
Sbjct: 242 LMINAAKQNPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSSQGSFAVQSPLLGHF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N + A       G D   ++  + KL   PGR + +    R     VDYAHT ++L 
Sbjct: 302 NVENLIAALIAAEQAGFDLDALVAFVPKLIGAPGRMQVIRDGER--LFVVDYAHTPDALI 359

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIFA 419

Query: 431 EIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D 
Sbjct: 420 DMKQGINFSGHRMQEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDV 478

Query: 487 DIIREILG 494
             ++  + 
Sbjct: 479 VEVQSAIA 486


>gi|325915639|ref|ZP_08177947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538199|gb|EGD09887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 491

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 223/488 (45%), Gaps = 18/488 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL       R+ +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++  
Sbjct: 3   LSQLLPDLTLARDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVLFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                +            + V   R  L   A + +G HP   L + G +G +   S VQ
Sbjct: 63  PPAPAELPVPADA-----IAVPGLRARLGSMADQFHG-HPSRALRMVGVTGTNGKTSTVQ 116

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL----AKALSYLSSQGVTHVSVEAS 190
            + Q   L     G   T+        + T     L       L+ L  +G    ++E S
Sbjct: 117 LLAQALTLLGTSTGTLGTLGVGLYGAAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVS 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH LDQ R+D +      FTNL RDH+DYH     Y  AK +LF         A++  DD
Sbjct: 177 SHALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTR--AGLQAAVVNLDD 234

Query: 251 AYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A+ + +      A     V S G  G  +    +   HN     + ++        PL G
Sbjct: 235 AFGRTLFASLDPALRAIGVSSRGQGGATVRADALQLDHNGISFALRIDSTVHAVHSPLLG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L  AG   A+    A + + L +L  + GR   +G       + VDYAHT ++
Sbjct: 295 RFNVDNLLAVAGALHALDHAPAQIAQVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDA 354

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L ++R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I
Sbjct: 355 LEQALASLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDVI 414

Query: 429 RAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G       I + +R  AI  AI M +  D++++AGKGHE    V  G +    D
Sbjct: 415 VADIVRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDD 473

Query: 486 CDIIREIL 493
             +  + L
Sbjct: 474 AAVAAQAL 481


>gi|300690336|ref|YP_003751331.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
 gi|299077396|emb|CBJ50021.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
          Length = 514

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 171/511 (33%), Positives = 240/511 (46%), Gaps = 37/511 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE----DGHLFIPQ 62
           I      +++ L        +     ++SD+R ++AG +FVA V        DG   IPQ
Sbjct: 12  IAARLAPVLDWLRAHVPAGAD-----LTSDTRKLKAGDVFVAYVLGNVRQHGDGRPHIPQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119
           AI  GA A++  +   +    A +R    IL VD+  +     A++ Y         ++ 
Sbjct: 67  AIEAGASAVLAEAHGYVVPADAPLR----ILPVDDLAELAGPLAAQWYAVPGPDALRVIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S + ++ Q   R G     +G   T           TTP  I L  +L+ L 
Sbjct: 123 VTGTNGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLAELH 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   V++E SSHGL+Q R DG +     FTNL +DH+DYH T   Y  AK RLF    
Sbjct: 183 RAGARAVAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--W 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P    A+I  DDA    ++     AG   +  G  G+    +          V +   G 
Sbjct: 241 PGLRAAVINRDDAAGVRLL-TGLRAGIEAIEYGIDGEAAAQRGAGHWLRATNVRVHRTGT 299

Query: 299 DFD---------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            FD            P+ G F V N L   G+ +  G+     +  LEKL  V GR E  
Sbjct: 300 TFDIDGSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERF 359

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           G    G  + VDYAHT ++LE  L+ +  IT   +GR+  VFGCGGDRD GKRP MG IA
Sbjct: 360 G-GEDGPLVVVDYAHTPDALEQTLRALAPITEARAGRLWAVFGCGGDRDPGKRPQMGAIA 418

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLV 463
             LA   ++T DNPRSEDP++I   I  G+       +  +R  AI  A+   +  DV+V
Sbjct: 419 ERLAQHVVLTSDNPRSEDPQQILDMIADGMEDPYAATQIEDRAAAILHAVRHADAHDVIV 478

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           VAGKGHE+   +  G K+   D + +R  L 
Sbjct: 479 VAGKGHESTQEI-GGRKRPFSDQEHVRLALA 508


>gi|326388913|ref|ZP_08210495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206513|gb|EGD57348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 485

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 178/479 (37%), Positives = 257/479 (53%), Gaps = 13/479 (2%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P++     +   + D R +  G +F A  G + +G  FIP AI         + A ++ 
Sbjct: 15  VPVECDGIDVTGFAIDHRKVAPGTVFGAFPGARVNGEDFIPAAI--------AAGAVAVV 66

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                +      +     R+  +  A+  +   PE ++AVTGT+GK+S     +QI + +
Sbjct: 67  ARPEAVVEGAVHIPDAEPRRLFARIAAGFFTPVPETVVAVTGTNGKTSTVEMTRQIWRMA 126

Query: 141 GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  S  IG    T +  +    +TTP  +     +S L+ +G+TH++ EASSHGLDQ+R 
Sbjct: 127 GHRSASIGTLGVTTADESISTGMTTPDIVTFLANVSGLAREGITHLAYEASSHGLDQYRS 186

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +G  + AG+FTNL RDH+DYH + +AYF AKMRLF+E++ +   A+++ADD +S   +  
Sbjct: 187 EGPVVAAGAFTNLSRDHLDYHPSMEAYFAAKMRLFDEVVGEGGAAVVWADDEWSDRAIDH 246

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A     RVL+VG +G+ I L         QQ+ +  EG+      PL G +Q  NALV+A
Sbjct: 247 ARRRALRVLTVGERGETIRLVGRKPTLLGQQLDLVHEGQARKITLPLIGAYQAANALVSA 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           GL +A G D     + L +L  V GR E       G  +YVDYAHT +++      +R  
Sbjct: 307 GLVLATGGDPTQTFDALGRLQPVRGRLERAAITRTGAPVYVDYAHTPDAITAACAALRPH 366

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             GR+IVVFG GGDRD GKR  MG  A   AD+ IVTDDNPR EDP  IRA ++ G  G 
Sbjct: 367 VEGRLIVVFGAGGDRDPGKRGPMGAAACAGADLVIVTDDNPRGEDPAAIRAAVLAGCTGV 426

Query: 440 I-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVDCDIIREILG 494
             E G+R  AI  AI    K D+++VAGKGHE   ++  G+        D  ++RE  G
Sbjct: 427 ARETGDRRAAIAEAIAQAGKGDIVLVAGKGHEQGQVIGRGDAARTLPFDDVAVVRECTG 485


>gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 495

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 144/471 (30%), Positives = 227/471 (48%), Gaps = 18/471 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  VS  S  ++ G ++VA+ G +  G  F+ +A+ +GA A++  S        A + 
Sbjct: 33  VEVTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAVAVLSDS----WGVEAAVE 88

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L   + R    + +S +YG+  + +  + +TGTSGK+S A  V+   + +G  + 
Sbjct: 89  HGLPALHHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAYLVEAGLKAAGRVTG 148

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T I +    +  TTP    L    +Y   QGVT + +E SSH L  HR +GI  
Sbjct: 149 LIGTVETRIGAETIVSERTTPEATELQALFAYALEQGVTDIVMEVSSHALTLHRAEGISF 208

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FT  G DH+D+H T   YF AK +LF+    +    ++ ADDA++K ++       
Sbjct: 209 AVGGFTMFGLDHLDFHPTVDEYFAAKAKLFDG---RCRVEVVNADDAWAKRLV----TPD 261

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+        +  +      Q   ++           LPG   + NAL+A G   A
Sbjct: 262 TVTYSLVDANATWSVDSITGSGFDQSFEVTSPHGRHHGSVRLPGRHNIANALLAYGCLTA 321

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+     +  +     VPGR E V +        VDYAH  +++  +L+ +R ITSG +
Sbjct: 322 VGVPVETAIAGVADCAGVPGRMELV-SEDNPVHGVVDYAHKPDAITAVLEALRPITSGSL 380

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442
           I V G GGDRD  KR +MG  A   AD+ IVTDDNPR+EDP  +RA ++ G+     +E 
Sbjct: 381 IAVIGAGGDRDPSKRTLMGDAAARAADLVIVTDDNPRTEDPAAVRAGVLAGVGDRPHLEV 440

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R  AI  A+      D + + GKGHE+   + +       D  ++ + L
Sbjct: 441 ADRATAIDEAVARAKPGDTIALLGKGHESGQELAD-RVLPFDDRRVLADAL 490


>gi|291520211|emb|CBK75432.1| UDP-N-acetylmuramyl-tripeptide synthetases [Butyrivibrio
           fibrisolvens 16/4]
          Length = 490

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 142/506 (28%), Positives = 238/506 (47%), Gaps = 37/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   EL            +++I+ +  DSR ++   +FV I G   D H FI
Sbjct: 1   MKLTTLLEELDYELYAGE-------LDKEISTLVYDSRKVEKDSVFVCISGTVRDAHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  I +GA AI++       D           + V N+R+ L++ ++  +G   + +  +
Sbjct: 54  PDVIEKGATAIIIEKDVEPVD-------GITYIKVANSRQALAILSAAYFGHPAKELKTI 106

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        V+ I +++G+ +  IG   S +         TTP    + +    +
Sbjct: 107 GITGTKGKTTTTYMVKSILEKAGIKTGLIGTIESIVGEERIPAVNTTPESYRVQELFRQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFE 235
              G+  V +E SS  L  HR+ G     G FTNL  DHI    H+  + Y + K  LF+
Sbjct: 167 VDAGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGENEHKDFEDYMHCKSLLFQ 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VT 292
           +        I   D  + + ++K      C V+  GY      + +   + N+     V 
Sbjct: 227 QC----KVGIFNGDSEHIEGILK---GHTCDVIKYGYGKDNDLIAENVELLNENGALGVR 279

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             + GK D      +PG F VYN+L A  +C    +    +   L  +H V GR E V  
Sbjct: 280 YHITGKEDMTVEVNVPGTFSVYNSLTAVAICKQFNVAEDKIKSALMNVH-VKGRIELVPV 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +S+   + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +R  MG+++  LAD
Sbjct: 339 SSK-FTVMIDYAHNAMALESLLTTLKAYEPGRLVCLFGCGGNRAKSRRYEMGEVSSKLAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + +VT DNPR+E+P  I  +I+ G+      ++   +R EAIR  +    + D++V+AGK
Sbjct: 398 LTVVTSDNPRNEEPMDIINDILIGVKKADGEYVTVPDRKEAIRYCLTNAKEGDIIVLAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    + ++I EI+
Sbjct: 458 GHEDYQEIK-GVKHHMDERELIAEII 482


>gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
          Length = 480

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 150/494 (30%), Positives = 240/494 (48%), Gaps = 26/494 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++DL+         +         E ++ ++S D+R I+   IFVA  G   D H  I
Sbjct: 1   MKVKDLLKGV------EYFCKDKSLLEYEVADISFDNRDIKENSIFVAYKGVSYDTHNDI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILA 119
            + I              ++        + P +VV N R+ LS+ +   +   +  N + 
Sbjct: 55  NKLIN----------DSRIKVLVTEKEFDFPTIVVKNGRRALSIISKNFFIKNYEPNYIG 104

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ A  +  I + +G  + + G  +  I      +  TTPS     K L    
Sbjct: 105 VTGTNGKTTTAYLINHIVEFTGYKTARFGTINYKIDKELYPSTTTTPSTYEFYKMLGVAE 164

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 V +E SSH LDQ R+ GI      +TNL  DH+DYH+    YFN+K +LF E L
Sbjct: 165 KANCEFVVMEVSSHALDQDRVYGINFNYAIYTNLSGDHLDYHKDLDDYFNSKSKLFTEYL 224

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I+  DD Y K+++    +      S         ++      +K  + +++ G+
Sbjct: 225 --NGCGIVNIDDEYGKKLLYLIKDNEILTYSFNNNKANCFVEHFDMNLDKTDIVLNLLGE 282

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F   L G+  +YN + A      +GID   +   ++    VPGR E +  N+    I
Sbjct: 283 KIHFETSLVGKHNIYNLMAAILTAHHLGIDHDRITRAIKTFSNVPGRLEKLIYNN--IYI 340

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           ++DYAHT ++LE +L ++R     RII +FGCGGDRD+ KRP M K+A   +D+ +VT D
Sbjct: 341 FIDYAHTDDALENVLSSLRPFRKRRIITLFGCGGDRDKSKRPRMAKVAEKYSDLVMVTSD 400

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+EDPEKI   I+ G       + + +R EAI+ A++    +D++++AGKGHE   ++
Sbjct: 401 NPRNEDPEKIIDGILKGFGDKSKVVVEPDRREAIKLALKEAEPEDIVLIAGKGHEDYQLI 460

Query: 476 TNGEKKMSVDCDII 489
             G K    D + +
Sbjct: 461 K-GVKYHFDDKEEV 473


>gi|325925691|ref|ZP_08187069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
 gi|325543907|gb|EGD15312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
          Length = 491

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 231/488 (47%), Gaps = 18/488 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL        + +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++  
Sbjct: 3   LSQLLPDVALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                      +      + V   R  L + A + +G+  +   ++ VTGT+GK+S    
Sbjct: 63  PPA-----PDGLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQL 117

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  +G     +   A     TTP  +     L+ L  +G   V++E SS
Sbjct: 118 LAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+D +      FTNL RDH+DYH     Y  AK +LF         A++  DD 
Sbjct: 178 HALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTR--AGLKAAVVNLDDG 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           + + +   A +   R + V  +         + +   HN     ++++G+      PL G
Sbjct: 236 FGRTLFA-ALDPALRAIGVSSRAHADARVSAQALQLDHNGINFALNIQGQVHPVHSPLLG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L  AG   A+    A +   L +L  + GR   +G       + VDYAHT ++
Sbjct: 295 RFNVDNLLAVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDA 354

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L ++R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I
Sbjct: 355 LEQALSSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAI 414

Query: 429 RAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G       I + +R  AI  AI M +  D++++AGKGHE    +  G +    D
Sbjct: 415 VADILRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEIA-GVRHAFDD 473

Query: 486 CDIIREIL 493
             +  + L
Sbjct: 474 ALVAAQAL 481


>gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alistipes sp. HGB5]
          Length = 485

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 147/494 (29%), Positives = 237/494 (47%), Gaps = 24/494 (4%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL+    +  +   +   +  +  DSR +  G  F A+ G + DGH FIP      
Sbjct: 2   KTLKELLRNTPVTALHGDDSAAVAGLVYDSRAVGPGDCFFAVRGTQNDGHDFIPA----- 56

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
                 ++A   +       ++   + V +    L+  A+  Y        ++ +TGT+G
Sbjct: 57  -AVAKGAAAVVCERLPEQTAADVVYVAVPDAAGALADMAAAFYDHPSRALKLVGITGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  + +  + +  G  +  I      +         TTP P+ L   +  ++ +G  +
Sbjct: 116 KTTTVTLLYDLVRALGHKAGLISTVVYKVGERTVGATHTTPDPVRLNAMMREMADEGCEY 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH + Q R  G+    G F+N+  DH+DYH+T   Y  AK +LF + L KE+ A
Sbjct: 176 CFMECSSHAIVQERTRGLHFAGGIFSNITHDHLDYHKTFAEYIRAK-KLFFDSLSKEAFA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  ADD   + ++    N    + +   +       K+  +H    + + ++G++     
Sbjct: 235 LTNADDKNGRVMV---QNTAAAIHTYSLRSMADFRCKIVEMHPDGML-LRIDGQEVWV-- 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F  YN L   G  + +G D    L     LH V GRFE V  ++ G    VDYAH
Sbjct: 289 GLVGRFNAYNLLAVYGAAVLLGFDRGETLRAASMLHPVSGRFELV-RSANGVTAVVDYAH 347

Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++LE +++ I  I   + ++IVV GCGGDRD+ KRP M +IA+  AD A+ T DNPR 
Sbjct: 348 TPDALENVIRTIEEIRTPAQKLIVVCGCGGDRDRTKRPEMAQIAVRYADTAVFTSDNPRH 407

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E PE I  ++  G+     F+   +R EAIRTA+ +    D+L+VAGKGHET  IV +  
Sbjct: 408 ESPEAILDQMAAGLEPGARFLRIADRAEAIRTAVMLSQPGDILLVAGKGHETYQIVGD-V 466

Query: 480 KKMSVDCDIIREIL 493
           K    D + +R+  
Sbjct: 467 KHPFDDREEVRKAF 480


>gi|94501901|ref|ZP_01308411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
 gi|94425954|gb|EAT10952.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
          Length = 490

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 240/475 (50%), Gaps = 23/475 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            + + +N +  DSR ++ G   + +     D   +I QA+ + A  ++    YS  ++  
Sbjct: 22  GQAQTLNRIVFDSRDVEDGDALIVLPSVAGDEAAYIEQALEKRAVLVIGEIEYSAHNYC- 80

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
                     V +   F +   +   G   +  +++ VTGT+GKSS+  +V Q+      
Sbjct: 81  ---------RVSDVMTFAASVLNHELGSPSQHMDVIGVTGTNGKSSIVFYVAQLLTELRH 131

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS--QGVTHVSVEASSHGLDQHRLD 200
           S   +G       F  D + T  + + L +    L+   +    +++E SSHGL Q RL 
Sbjct: 132 SCAVMGTLG--YGFWNDLKPTGMTTLPLPRLHQALADVKKDCKAIAMEVSSHGLHQKRLS 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+      FTNL RDH+DYH T  AYF+AK  LF+E  P    A+I  DD Y K+++  +
Sbjct: 190 GVAFNGAIFTNLSRDHLDYHGTMDAYFDAKRLLFKE--PGLQWAVINQDDDYGKKLL--S 245

Query: 261 HNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                   S G   K  +H          QQ+ +   G++ +   PL GEF  YNA  + 
Sbjct: 246 EPVSYSSYSYGTDEKSDLHFCITRTTDTGQQLALRFHGQEQEVFLPLLGEFNAYNAAASV 305

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              IA+G D +   + +  L  V GR E + +N     + VDYAHT +++E +LK+ R  
Sbjct: 306 LSVIAMGFDFSSACKAVTALRPVSGRMELIDSNDSQPNVLVDYAHTPDAVEQVLKSARKH 365

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G ++ + GCGGDRD+GKRP+M + A++ AD  ++T DNPRSE PE+I A+++ G+   
Sbjct: 366 CKGNLVCLVGCGGDRDRGKRPLMAQAAINFADSVLLTSDNPRSESPEQILADMVQGLKKE 425

Query: 440 I-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +  + +R +AI++AI      D++V+ GKGHE    + +G K    D +  RE L
Sbjct: 426 VPSELDRKQAIQSAILNAKSDDLIVIVGKGHEDYQEI-HGVKYPFSDQETAREAL 479


>gi|207721509|ref|YP_002251949.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
 gi|206586669|emb|CAQ17255.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
          Length = 514

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 168/506 (33%), Positives = 240/506 (47%), Gaps = 35/506 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQ 66
              +++ L        +     ++SD+R ++ G +FVA V GN   + DG   IPQAI  
Sbjct: 16  LRPVLDWLRAHVPAGAD-----LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEA 70

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGT 123
           GA A++  +   +    A +R    IL VD   +     A++ Y         ++ VTGT
Sbjct: 71  GASAVLAEAHGYVVPADAPVR----ILPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+S + ++ Q   R G     +G   T           TTP  I L ++L+ L   G 
Sbjct: 127 NGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDTLVATGFTTPDAIQLQRSLADLHRAGA 186

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++E SSHGL+Q R DG +     FTNL +DH+DYH T   Y  AK RLF    P   
Sbjct: 187 RAVAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLR 244

Query: 243 PAIIYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            A+I  DDA    ++        A   G    +   +G    L+      ++   T  V+
Sbjct: 245 AAVINRDDAAGVRLLTGLRADIEAVEYGIDGEAAAQRGARHWLRATSVRAHRTGTTFDVD 304

Query: 297 GKDFDFLFPLPG--EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G         P    F V N L   G+ +  G+     +  LEKL  V GR E  G    
Sbjct: 305 GSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFG-GED 363

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           G  + VDYAHT ++LE  L+ +  IT    G++  VFGCGGDRD GKRP MG IA  LA 
Sbjct: 364 GPLVVVDYAHTPDALEQTLRALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQ 423

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             ++T DNPRSEDP++I   I  G+      ++  +R  AI  A+   +  DV+VVAGKG
Sbjct: 424 HVVLTSDNPRSEDPQQILDMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKG 483

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE+   +  G K+   D + +R  L 
Sbjct: 484 HESTQEIA-GRKRPFSDQEHVRLALA 508


>gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
 gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
          Length = 499

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 146/467 (31%), Positives = 218/467 (46%), Gaps = 23/467 (4%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G IF  +VG   DGH FI Q +  G   +++    S            P + V
Sbjct: 37  DSRTVGPGDIFACVVGLHADGHRFIEQVLKAGVSYLLIQRPVSGLP--------IPWIQV 88

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            + R  +   A+ L  +  E +   AVTGT GKS+ +  V+ I Q  G+    +G     
Sbjct: 89  TDVRAAMGYVAAALNEEPSEKMKMFAVTGTQGKSTTSYMVRSILQNCGVKCGLLGTIVYD 148

Query: 154 -SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             S +     TTP    + + L  +   G    S+E SSHG+ Q RL G       FTNL
Sbjct: 149 DGSKSVLADRTTPEGSEIQQFLKNMVDNGCQACSMECSSHGIAQGRLSGCLYDGAVFTNL 208

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             +H+D+H T + Y+ AK  LF + L   +     A   + + +      A    L    
Sbjct: 209 TPEHLDFHGTMENYYEAKAALFRKYLKPGAAVAPNAASEHGRRLAAEFPQAMTWAL---E 265

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
               +    V    +  +  +  +G+       PL G   V NAL AA +C+A G D   
Sbjct: 266 APARLQGANVKLDIDGSEFDLIFDGRKMGRVHIPLSGRHNVENALGAAAVCLAEGCDEKK 325

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           V+  L  +  VPGR E +     G R+ +DYAHT++SL+ +L+ +R +T GR++ +FG G
Sbjct: 326 VVAGLALMPQVPGRMERLNL-DNGVRVVIDYAHTADSLKALLETLRPLTEGRLVSLFGHG 384

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------R 445
           GDR  G R ++G+ A   AD   VT DNPR+EDP KI  +I+ GI      G       R
Sbjct: 385 GDRFAGHRSLLGRAAAQKADRIFVTMDNPRTEDPLKIAEQIVAGIEEVRADGCWSIELPR 444

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             AI  A++   + D+LV++GKG E    + NG K    D  ++ + 
Sbjct: 445 DAAICKALDWCRRGDLLVLSGKGPEPYLEI-NGVKYPYSDRAVVEKW 490


>gi|331088263|ref|ZP_08337182.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408507|gb|EGG87973.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 488

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 156/509 (30%), Positives = 250/509 (49%), Gaps = 37/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E++           E ++  +++DSR +++G +FV I G   DGH ++
Sbjct: 1   MKLSKLLERLEYEVV-------QGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                         +A  + +          ++  +NTR  L+L ++  +G   E +  +
Sbjct: 54  SDVAK-------KGAAAIIAERDIEAPKGVTVIKAENTRYALALMSAAYFGYPAEKLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ I +  G     IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
             +G   V +E SS GL  HR  GI    G FTNLG+DHI    H+  + Y   K  LF+
Sbjct: 167 VEEGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQ 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ--QVT 292
           +        I   DD Y +++ +    A C+V + G+  K  +  + V  +       V+
Sbjct: 227 QC----KLGIANIDDPYYEDIFR---GATCKVETFGFSPKADLRAENVNLVSKPGYLGVS 279

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V GK DFD    +PG+F VYN+L A  +C   G+ S  + E L+  H V GR E +  
Sbjct: 280 YHVAGKADFDVEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAH-VKGRIEMIKV 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            S    + +DYAH + SLE +L  ++     R++ VFGCGG+R + +R  MG+++  LAD
Sbjct: 339 -SDDFTLMIDYAHNAMSLESLLTTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + I+T DNPR E+P++I  +I  GI      ++E  +R EAI+ AIE     DV+V+AGK
Sbjct: 398 LTIITSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GHE    +  G K    +  +I E+L  I
Sbjct: 458 GHEDYQEIK-GVKYPMDERTLIAEVLEEI 485


>gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
 gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
          Length = 536

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 164/528 (31%), Positives = 244/528 (46%), Gaps = 53/528 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++            +I  ++ DSR I    +F A+ G   DGH FI
Sbjct: 24  MKLTQLLAALDSHDLHGDGA-------VEIKALTCDSRGIVPDSLFFALRGAAMDGHDFI 76

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P        A+   +   + +  +   +  P + V + R  ++  A+  +G     +  +
Sbjct: 77  P-------AAVQAGAVAVVLEDESRAPAAIPWVRVRDGRSAMAWMAAEFHGNPTSRLPLI 129

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I + +G+ +  +G  S            TTP    L  A + L
Sbjct: 130 GITGTNGKTTTTYLIEAILRAAGIPAAVLGTISYRFGDTVITASHTTPESTELQAAFTQL 189

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G     +E SSH L+Q R+DG     G F+NL RDH+DYH T ++Y  AK+RLF EL
Sbjct: 190 AAAGAKAFVMEVSSHALEQKRVDGCHFDVGIFSNLTRDHLDYHVTMESYREAKLRLFSEL 249

Query: 238 LPKES-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +      A I  DD     V  RA    C V+  G     +  +++    +  +  
Sbjct: 250 LKPTADKPLRRAAINMDDEQGATVAARAA---CPVIGYGICRGDVRAEELSLSVDGIRAR 306

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       D    L G F + N L A    IA+ +    +   +E    VPGR E V  N
Sbjct: 307 LVTPKGSIDVSSRLLGRFNLSNILAAVSAGIALDLPLEAIRAGIEGHATVPGRMERVD-N 365

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAHT ++LE +L  ++ +  GRII VFGCGGDRD GKRPIMG+IA  ++D+
Sbjct: 366 RCGITLLVDYAHTGDALENVLTTLKELAQGRIITVFGCGGDRDPGKRPIMGRIAASMSDL 425

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--------------------------PGFIEKGNRI 446
           AIVT DNPR+EDP  I  +I  GI                           GF+   NR 
Sbjct: 426 AIVTSDNPRTEDPFSILEQIRGGITPLGIREYGVDELADRSGKGLAEGADKGFVSLENRR 485

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           EAI  A+ +    D++++AGKGHE   I+    K    D +  R  L 
Sbjct: 486 EAISLAVRLARPGDIVLLAGKGHEDYQIIGR-TKHHFDDREEARLALA 532


>gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
          Length = 563

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 160/541 (29%), Positives = 241/541 (44%), Gaps = 65/541 (12%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +LS       + ++   S DSR +  G ++ A+ G    G  F   A+  GA A++  
Sbjct: 18  LAELSGAAGPVPDLRVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGAVAVLTD 77

Query: 75  SAYSLQDFSATIRSN-----------------------TPILVVDNTRKFLSLFASRLYG 111
           +A +         ++                        P+LVVD+ R  L   A+ +YG
Sbjct: 78  AAGAAVIRGQAGSADSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQLAAAIYG 137

Query: 112 KHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPI 168
               ++  + +TGT+GK++ A  ++   +  G S+  IG   T +     D+  TTP   
Sbjct: 138 DPGADLTMVGITGTNGKTTTAYLLESALRALGCSTGLIGTIETRVGKERLDSSHTTPEAT 197

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +   L+ +  +G     +E SSH LDQHR+DG+      FTNL +DH+DYH + + YF 
Sbjct: 198 DVHALLAVMRERGADTCVMEVSSHALDQHRVDGVVYDVALFTNLSQDHLDYHGSMEDYFA 257

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRA------------HNAGCRVLSVGYQGKF 276
           AK RLF           +  DD + + ++ RA              +     S G +  +
Sbjct: 258 AKARLFTPERSLSGV--VCVDDEWGRRLIDRATVPVTTLTTLPTPTSEPTPTSTGAEVDW 315

Query: 277 ---IHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIAIGIDSAL 331
                        + Q   +     D        LPG+F V N  +AA   +++G + A 
Sbjct: 316 SVVPRRGAAVDGASGQPFHLVHRSGDRSLSLASHLPGDFNVANTAIAAVALLSLGHEPAR 375

Query: 332 VLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           V   L     VPGR E V        R  VD+AHT +++++ L  +R  T GR+I V G 
Sbjct: 376 VEAALAVPPSVPGRMEVVAPGGTTDPRCIVDFAHTPDAIDVALAALRPSTRGRLIAVLGA 435

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------ 444
           GGDRD+GKR  MG+ A   ADI +VTDDNPRSEDP +IR  ++ G    +  G+      
Sbjct: 436 GGDRDRGKREAMGRAAARHADIVVVTDDNPRSEDPAEIRRTVLAGARSAVTDGSAVAREI 495

Query: 445 -----RIEAIRTAIEMLNKQ-------DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                R  AI +AI M  +        D +VV GKGHE    V NG K    D + +R  
Sbjct: 496 IDGGARSRAISSAIAMALRGSSGSDGADTVVVLGKGHEKGQEV-NGVKHPFDDREAVRTA 554

Query: 493 L 493
           L
Sbjct: 555 L 555


>gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 508

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 228/485 (47%), Gaps = 28/485 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  +S+D+R ++ G IFVA+ G   DG  FIP AI +GA+A+VV         S   
Sbjct: 26  DTVVTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKGAKAVVVE-------GSYQP 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
               P+++VDN R   S  A+  +      +  + VTGT+GK++    +  + + +  S+
Sbjct: 79  DLQVPVIIVDNARLAFSRLAAEFWDNPSHKLKVIGVTGTNGKTTTTYMISSMLESADAST 138

Query: 145 FQIGPT-STISSFAQDNRLT--TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             I      I++    +     TP P  L + L  +   GV +  +E+SSHGL  HRL+ 
Sbjct: 139 GFITTVDYKIANHQWKHEEHSTTPQPDRLHELLYRMLQAGVEYAVIESSSHGLKLHRLED 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-----ESPAIIYADDAYSKEV 256
           +      FTN+  +H++ H T + Y   K RLF+ L            +I  DD  ++ +
Sbjct: 199 VAYDVAVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPDKGCGKWGVINLDDPNAQ-L 257

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              +        S   +   +    +          +  +G   +   P+ G++ VYNAL
Sbjct: 258 YIDSTKGKVFTYSQQDENADLIGNIIRRSEEGVTFRVHYKGNSTEINLPISGDYNVYNAL 317

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G+ I   I   +    LE+   VPGR + +    +   + +DYAHT +SLE +L  +
Sbjct: 318 AAIGVAITQNIPIDVCKSALERFTGVPGRMQVISM-GQPFTVVIDYAHTEDSLEKVLITL 376

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +  T GR+  VFG  G+RD  KR  MGK+A   AD  I+T+++PR ED  +I  +I  G 
Sbjct: 377 KQRTRGRLFAVFGSAGERDPYKRAPMGKVAAKYADFMILTNEDPRGEDEMQILLDIAEGA 436

Query: 437 --------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
                     +I   +R  AI  A+   +  D +++AGKGHET     NG      + +I
Sbjct: 437 RSVGAIEGRDYICIPDRKAAIYEALSRASSGDTVLLAGKGHETTIETKNGFIPW-DEAEI 495

Query: 489 IREIL 493
            ++ L
Sbjct: 496 AKQAL 500


>gi|332288557|ref|YP_004419409.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
 gi|330431453|gb|AEC16512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
          Length = 488

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 163/485 (33%), Positives = 246/485 (50%), Gaps = 13/485 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
            F +   E+ +N +  DSR +QAG +F+ ++G++ DG  F  QA+A GA  +++ S    
Sbjct: 7   YFAISLLEQPLNHLQLDSRAVQAGDVFIGLIGHQLDGRKFAAQAVAAGAAVVILESEDPQ 66

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137
                    N P + V      LS  A   Y    +   ++ VTGT+GK++VA+ + Q  
Sbjct: 67  DQARIEWHDNIPFIYVYRLAHQLSSLAGAFYHHPSQKVTLVGVTGTNGKTTVANLLTQWT 126

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G          +    TT S + + + L+   +     V++E SSHGL Q
Sbjct: 127 HLLGKKSAVMGTIGNGFYQQVKAATNTTGSAVEIQRNLAEFVAHQADFVAMEVSSHGLVQ 186

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+D ++  A  FTNL RDH+DYH T QAY +AK  LF           I ADD   K+ 
Sbjct: 187 HRVDALQFAAAVFTNLSRDHLDYHHTMQAYADAKKMLFTGFNVPNRI--INADDEVGKQW 244

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVY 313
           +++  +A    L   +Q +    LK    ++++Q VTI+V+       F   L GEF V 
Sbjct: 245 LQQMDDAIEVSLQSDFQPQHKRWLKATNLVYHQQGVTITVDSSWGKAVFHSQLIGEFNVC 304

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A    +++G   + + + + +L  V GR E      R     VDYAHT ++L+  L
Sbjct: 305 NLLLATATLLSLGYSLSCLSDSVNQLQGVCGRMECFTAEGR-PTAIVDYAHTPDALDKAL 363

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R    G++  VFGCGGDRD+GKRP M KIA  LAD  ++TDDNPR+ED   I  +I+
Sbjct: 364 RAARLHCDGQLWCVFGCGGDRDKGKRPQMAKIAEQLADHIVITDDNPRTEDAAAIINDIV 423

Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G+           R +A+  A    N  DV++VAGKGHE   I+ +  K    D +I+ 
Sbjct: 424 QGLDFPNNATIIHQRKQALVYAFACANANDVILVAGKGHEDYQIIGH-TKHHFSDREIVS 482

Query: 491 EILGL 495
           ++L  
Sbjct: 483 QLLNF 487


>gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
 gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
          Length = 494

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 236/472 (50%), Gaps = 14/472 (2%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            I+ + +DSR ++ G  FVA+ G       +I  AI  GA  I++ S    Q    + RS
Sbjct: 23  TIHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRAGASVILLESE---QAGECSERS 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I+ V   +  L   A R +    + +  + VTGT+GK+SV  ++ Q+ Q +G     
Sbjct: 80  GALIVPVPELKVRLGKLADRFFEYPSQRLQLVGVTGTNGKTSVTQYIAQLLQAAGTPCGV 139

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +    Q    TTP  +   + L+ + + G    ++E SSH LDQ R+D + L 
Sbjct: 140 LGTLGYGMPETLQPATHTTPDVVQANRVLAGILASGGRAAAMEVSSHALDQGRIDRLTLT 199

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTNL RDH+DYH +  AY  AK +LF     +    +I  DD + +++  +      
Sbjct: 200 AAVFTNLTRDHLDYHGSMAAYGEAKAKLFSR--EELRFVVINVDDPFGRKLYHQLEGKCD 257

Query: 266 RV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           R+  S+      + LK+ CA+ N  +  +     +F    PL G F   N L A    +A
Sbjct: 258 RLRFSLHEPQAELWLKEFCALDNGFRAVLDGRWGEFTIEAPLMGRFNASNVLAAVATVMA 317

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+D   V   + +L    GR + V T   G R  VDYAHT ++L   L  +R   SGR+
Sbjct: 318 LGVDVTQVQHGVRRLVPPAGRLQ-VFTAGDGARAVVDYAHTPDALNNALAALRPHVSGRL 376

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441
           I VFGCGGDRD GKRP M + A + AD+ IVTDDNPR+E P  I A+I+ G         
Sbjct: 377 ICVFGCGGDRDSGKRPEMAQQAENGADLVIVTDDNPRTETPSAITADIMAGFIAPEKIQL 436

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +R +AI  A+ +    D+++VAGKGHE    +  G K    D + + + L
Sbjct: 437 IHSRAQAIAAALALAGPDDLVLVAGKGHEDYQDIA-GCKYPFSDSEQVTQAL 487


>gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 492

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 154/509 (30%), Positives = 244/509 (47%), Gaps = 37/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVS----SDSRHIQAGWIFVAIVGNKEDG 56
           MKL +L+      ++           + +   ++     D   +  G +F+A+ G+ E G
Sbjct: 1   MKLSELLAGHDHHILQG---------DPETTWITAGTTFDVGRVTPGSLFIAVPGHGEGG 51

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
              +  A+A+GA A++V         SA        + V +TR   ++ ASR +G     
Sbjct: 52  PGSVGPALARGAAAVLVDGGAPDLPMSAA---GVCAVSVPDTRTAAAVVASRYFGAPGRQ 108

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-------SP 167
            +++A+TGT+GK+SV+  V+ + + S      +G   T  S   D  +  P         
Sbjct: 109 MDMVAITGTNGKTSVSYMVESVLRLS--EGATVGVIGTAGSRIGDEPILMPRSVLTTPES 166

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             L   L  +  +G   V +EA+S  L  HR+D   +  G FTNL +DH+D H T + Y 
Sbjct: 167 PDLQYLLGCMRDRGAGSVVLEATSMALLTHRVDCAFIDVGVFTNLTQDHLDDHGTMENYR 226

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +AK+RLF+ L      A++ ADD     +      A      +  +       ++    +
Sbjct: 227 DAKLRLFQGL---CRRAVVNADDPVGAGIQAMMPGA-VTTYGLDTEAADYRATELTVDAS 282

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  +  +G+ +    P+PG + V NAL     C A+G D   ++  L+++  VPGRFE
Sbjct: 283 GTRFVLHHDGRKYPAAIPVPGRYSVANALATVAACHALGHDLGGLVAALDRMPPVPGRFE 342

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              T  RG  + VDYAH+ +SL+ +L  IR    GR+I VFGCGGDRD  KR  MG+IA 
Sbjct: 343 RFRTP-RGTSVIVDYAHSPDSLDKVLTTIRGFAPGRVITVFGCGGDRDTTKRAEMGEIAG 401

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLV 463
             +D+ I+T DNPR+EDPE I  +I  G+      F    +R  AI  A+      D+++
Sbjct: 402 THSDLCILTSDNPRNEDPEAILDQITPGLTATGTPFERFTDRRRAIAFALSAAGPDDIVL 461

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +AGKG E   IV   +     D   +RE+
Sbjct: 462 IAGKGSEPHQIVGE-KLLPFSDMATVREL 489


>gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 515

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 156/500 (31%), Positives = 234/500 (46%), Gaps = 31/500 (6%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F +   + +I  ++ DSR +     F+AI G++ DG  FIPQAI+ GA  I+  +  
Sbjct: 14  LAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTDD 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
           S       +R ++ I+ +    + LS  A+  Y    + +  +AVTGT+GK+S    + Q
Sbjct: 74  SEAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQ 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLT--------TPSPIYLAKALSYLSSQGVTHVSV 187
           +    G  S  IG   + S F  D            TP  I +   L+      V H + 
Sbjct: 134 LKDALGTRSASIGTLGS-SVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRHAAF 192

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSH L Q RL  +K     FTNL RDH+DYH T + Y  AK  L  +  P     ++ 
Sbjct: 193 EASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLCQ--PGLKAVVLN 250

Query: 248 ADDAYSKEVMKRAHNAGCRVLS--------------VGYQGKFIHLKKVCAIHNKQQVTI 293
           A+D  S +    A NA  R+ +                 Q +                 +
Sbjct: 251 ANDDESNKWDNVADNAITRIWTGIDESADGALFRAHNNPQSRHCFATNASYHSGGCSFEL 310

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                      PL G+F + N L A G  +A G     V++ +  +  VPGR E      
Sbjct: 311 VSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDAVVKAVNAITPVPGRMEVFPVPG 370

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +  DYAHT ++LE +L + +  T+G++  VFGCGGDRD GKRP+MG+ A   AD  
Sbjct: 371 AANLVV-DYAHTPDALEKVLLSAKFHTAGKVWCVFGCGGDRDTGKRPLMGQAAEAGADAI 429

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++T DN RSEDPE I  +II G+      +   +R +AIR  +   +K D+++VAGKGHE
Sbjct: 430 VITTDNSRSEDPESIAQDIITGLKDSSLAVSIPDREQAIRHCLAHADKSDIIIVAGKGHE 489

Query: 471 TVHIVTNGEKKMSVDCDIIR 490
              I+ + +   +    + R
Sbjct: 490 DYQIIGDKKTNYNERAVVAR 509


>gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
 gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
          Length = 495

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 136/505 (26%), Positives = 233/505 (46%), Gaps = 28/505 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++  +  +LI  L           I+ ++ DSR ++   +F  I G   DGH F   A  
Sbjct: 1   MLATELAQLI-YLKKIEGNLSGVTIDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
           +GA A V S +   Q        +TP++ V +  + ++L A+  YG   +   ++ VTGT
Sbjct: 60  KGAVAFVASKSIKNQVG------DTPVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++V   +  + ++    +  IG     I         TTP  + L +    L   G 
Sbjct: 114 NGKTTVTHMIDALLEKPNKPTALIGTIYRKIGPKIIQTHNTTPEILTLHETFQELKEIGG 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--- 239
               +E SSH L   R+ G+      FTNL  +H+D H+T + Y +AK  LF +L     
Sbjct: 174 ETCLMEVSSHALQLGRVWGLDYDCVVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVG 233

Query: 240 ---KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
              K   A++ ADD   +      ++   +V+S G  +      + +   +      + +
Sbjct: 234 ENSKPKVAVLNADDEQFQMF---EYSTPVQVISYGINEEADFKAENIRTENGHTIFELVI 290

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +  + +    PL G F VYN L A  +    GI    +L+ ++    V GR + V    +
Sbjct: 291 QNDERYLVDMPLLGIFNVYNMLSAIAVAYVYGISIEEILKKVKAFQGVAGRMQSVD-KGQ 349

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLADIA 413
             ++ VD+AHT + LE +L ++  I  G+II V G  GG+RD   RP +G+IAL  +D  
Sbjct: 350 DFQVIVDFAHTPDGLENVLDSLAQIPHGKIITVVGHSGGNRDSSMRPELGRIALTKSDHV 409

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + T DNPR+E    I   ++  +      +     R EAI  A+++ +  D++++AGKG 
Sbjct: 410 VFTADNPRTEPLVNIYEGLLSAVNKKSVSYECIDKREEAIEKALQLASAGDIVLLAGKGV 469

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E   I+   E     + +++  +LG
Sbjct: 470 EAYQIIGEVEYPY-NEIEVVESLLG 493


>gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS)
 gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 497

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 147/477 (30%), Positives = 235/477 (49%), Gaps = 16/477 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR +  G +F+A+ G K+DG  FI QAI + A AI+  +    +        N
Sbjct: 22  ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIFKYIKN 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++      + +SL A+R Y +  + +  + +TGT+GK++V   + Q     G  +  +
Sbjct: 82  VILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTKTATM 141

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G       +  Q    TT SPI++   LS +  +    V++E SSHGL QHR+  +    
Sbjct: 142 GTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEVPFYI 201

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+DYH+  + Y +AK  LF     K    I+ ADD Y K  +K+  N    
Sbjct: 202 AIFTNLTQDHLDYHENLEKYESAKWLLFS--THKVKKIILNADDQYGKIWLKKLLNFYTV 259

Query: 267 VLSV------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +++       Y  K+I+   +   +N   +T             L G F V N L++  
Sbjct: 260 AVTIQNRKQKKYSTKWINATNIEQNNNSIYITFESSWGTGRISSCLIGRFNVTNLLLSLA 319

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G   + ++   EK+  V GR E   +  +     +DYAHT ++L+  L  I +  
Sbjct: 320 CLLELGYSLSDLIHTSEKIIPVQGRMELF-SYVKKPTFIIDYAHTPDALKKTLNAIHSHY 378

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
              I  +FGCGG+RDQ KRPIMG IA  ++D  I+T+DNPR+E  +KI  +I++G     
Sbjct: 379 QRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQDILNGCKNKE 438

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +   +R +AI  A        ++++AGKGHE   I+ N     S D  I+  +LG
Sbjct: 439 KILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKIVLNLLG 494


>gi|153815690|ref|ZP_01968358.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
 gi|145846931|gb|EDK23849.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
          Length = 488

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 156/509 (30%), Positives = 249/509 (48%), Gaps = 37/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E++           E ++  +++DSR +++G +FV I G   DGH ++
Sbjct: 1   MKLSKLLERLEYEVV-------QGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                         +A  + +          ++  +NTR  L+L ++  +G   E +  +
Sbjct: 54  SDVAK-------KGAAAIIAERDIEAPKGVTVIKAENTRYALALMSAAYFGYPAEKLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ I +  G     IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
             +G   V +E SS GL  HR  GI    G FTNLG+DHI    H+  + Y   K  LF+
Sbjct: 167 VEEGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQ 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ--QVT 292
           +        I   DD Y  ++ +    A C+V + G+  K  +  + V  +       V+
Sbjct: 227 QC----KLGIANIDDPYYADIFR---GATCKVETFGFSPKADLRAENVNLVSKPGYLGVS 279

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V GK DFD    +PG+F VYN+L A  +C   G+ S  + E L+  H V GR E +  
Sbjct: 280 YHVAGKADFDVEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAH-VKGRIEMIKV 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            S    + +DYAH + SLE +L  ++     R++ VFGCGG+R + +R  MG+++  LAD
Sbjct: 339 -SDDFTLMIDYAHNAMSLESLLTTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + I+T DNPR E+P++I  +I  GI      ++E  +R EAI+ AIE     DV+V+AGK
Sbjct: 398 LTIITSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GHE    +  G K    +  +I E+L  I
Sbjct: 458 GHEDYQEIK-GVKYPMDERTLIAEVLEEI 485


>gi|227872144|ref|ZP_03990514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
 gi|227842002|gb|EEJ52262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
          Length = 495

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 147/495 (29%), Positives = 239/495 (48%), Gaps = 20/495 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K +   +++  +        + + +S DSR  +AG +F+ + G+  D H  IP+ + +G 
Sbjct: 2   KGWLSCLSEAKVLRGDGEREEFSSLSYDSRRAKAGDLFLCMKGSTMDSHDKIPELLEKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGK 126
              VV             R +  I+ V+N RK L+  ++  +    + +L   +TGT GK
Sbjct: 62  RVFVVEKNLPDLPKEMQDREDLCIVQVENGRKALAELSAFYFSYPSKEMLMIGITGTKGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ AS V+ I   +G +   IG T    +   +++R TTP    L +    +  +G   V
Sbjct: 122 TTTASMVRAILTEAGYNCGLIGTTGIDYAGIHEESRNTTPESYTLQETFRKMKEKGCNAV 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESP 243
            +EASS G   HR DGI    G FTN+  DHI    H+    Y   K R+F +       
Sbjct: 182 VMEASSQGFKMHRTDGILFDYGIFTNIEEDHIGENEHKDFAEYKYYKSRIFTQ----SKT 237

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKDF 300
            ++  D  +S+E M+ A    C   ++  Q  F+  +      +     +       +D+
Sbjct: 238 GLVNLDADFSEEFMENAE-CPCFSFALKKQADFMATEIEDLHRHDFLGCRFHFRHGEEDW 296

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    LPG + VYNAL A  L   +GI   +V   L K+  V GR E V     G  + V
Sbjct: 297 EIWNHLPGRYNVYNALAAISLASLLGIKKEVVQSALRKIQ-VNGRMEVVLQRG-GYTVLV 354

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH +  ++ +L+ ++     R+IVVFGCGG+R + +R  MG++A ++AD  I+T DN 
Sbjct: 355 DYAHNAMGMKNLLETLKAYKPKRLIVVFGCGGNRAKERRYGMGEVAGEMADFTILTADNS 414

Query: 421 RSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R E    I ++I   +      +++  +R EAIR A+E   + D++ V GKGHE  + V 
Sbjct: 415 RYEKTMDIISDIESTLSKKTKNYVKIEDRREAIRYALEQAEEGDLIAVIGKGHEEYNEV- 473

Query: 477 NGEKKMSVDCDIIRE 491
           NG     VD ++I E
Sbjct: 474 NGTFTRFVDREVILE 488


>gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate
           ligase protein [Xanthomonas albilineans]
          Length = 494

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 235/480 (48%), Gaps = 16/480 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           RE +++ ++ DSR ++ G  FVAI G    G  F+ QA A GA AI+           A 
Sbjct: 18  REVQVSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAILFEPPA-----PAD 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
           + ++   + V   R  +   A +L+G   +   ++ VTGT+GK+S+   + Q     G  
Sbjct: 73  LPASADAIAVPGLRARMGAMADQLHGHPSQAMTMVGVTGTNGKTSIVQLLTQAWHVLGTC 132

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  IG     +         TTP  + L   L+ L   G   V++E SSH LDQ R+D +
Sbjct: 133 SGSIGTLGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSSHALDQGRVDAV 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL RDH+DYH+   AY  AK RLF   +P    A++  DD + ++++     
Sbjct: 193 HFDVAVFTNLTRDHLDYHRDMAAYGAAKARLFA--MPGLRAAVVNLDDTFGRQLLHALDP 250

Query: 263 AGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           A  R  V S G  G  +  + +          + V  +      PL G F V N L  AG
Sbjct: 251 ALRRIGVSSRGRDGATVRAEALHLDARGIGFDLVVGTQRHALQSPLLGRFNVDNLLAVAG 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              A+ +    +   L +L  + GR   +G       + VDYAHT ++LE  L+++R   
Sbjct: 311 ALYALDVPPVRIAATLAQLQPIRGRMNRLGGRDAQPLVVVDYAHTPDALEQALQSLRDHA 370

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR++ VFGCGG+RD GKRP M  IA  L+D   VTDDNPR ED E+I A+I+ G  G  
Sbjct: 371 KGRLLCVFGCGGERDAGKRPQMAAIAQRLSDYVFVTDDNPRGEDGERIVADILAGFDGMT 430

Query: 441 EKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
                  R +AI  AI M   +D++++AGKGHE    +  G K    D ++  + L + +
Sbjct: 431 TVQVQRERAQAIAAAIAMAGAEDIVLIAGKGHEPYQEIA-GIKHPFDDTEVAAQTLRVRV 489


>gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas sp. SN2]
          Length = 530

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 154/513 (30%), Positives = 237/513 (46%), Gaps = 40/513 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F +   + +I  ++ DSR +     FVA+ G++ DG  FIPQAI+ GA  I+  +  
Sbjct: 14  LAKFGIDAPDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQTDD 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQ 135
           S       +R ++ I+ +      LS  A+  Y      ++  AVTGT+GK+S    + Q
Sbjct: 74  SQAHGQMEMRDHSVIISLYQLPSMLSALAAAFYDYPALKMMTVAVTGTNGKTSTVQLLTQ 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVE 188
           +    G  S  +G   +     ++ +        TTP+ I L   L+      V H + E
Sbjct: 134 LKDALGTRSASVGTLGSSVYEGENTQWVTTAAANTTPNAIRLQYVLAEFVQCEVRHTAFE 193

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-------LLPKE 241
           ASSH L Q RL  +K     FTNL RDH+DYH T + Y  AK  L ++       L   +
Sbjct: 194 ASSHALVQGRLSQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQPGLEAVVLNVND 253

Query: 242 SPAIIYAD--------DAYSKEVMKRAHNAGCRVLSVGY-----------QGKFIHLKKV 282
           S +  +AD        D  S+E+                           Q +      V
Sbjct: 254 SESQNWADYLDANAAKDGSSEEIAISKPRVTRVWTGFEPTDDVLATHKQPQDRHCFATNV 313

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               +  +  +            L G F V N L A    +A G     V+  +  L  V
Sbjct: 314 SYHSSGIRFDLVSSWGTAPIELALFGSFNVSNTLSAISCLLAQGERFENVVRVVNGLQPV 373

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR E          + VDYAHT ++LE +LK+ +T T+G++  VFGCGGDRD+GKRP+M
Sbjct: 374 PGRMEVFPVGG-SASVIVDYAHTPDALEQVLKSAKTHTAGKVWCVFGCGGDRDKGKRPLM 432

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQ 459
           G  A   AD+ ++T DN RSE PE I ++I  G+      +E+ +R  AIR  ++  ++ 
Sbjct: 433 GAAAEQHADVIVITTDNSRSESPESIASDIKAGLQRPNDAVEEADRESAIRYCLDSADEN 492

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D+++VAGKGHE   I+   +     +  ++  +
Sbjct: 493 DIIIVAGKGHEDYQIIGTQQTDY-NERTVVARL 524


>gi|78221628|ref|YP_383375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
 gi|123572782|sp|Q39YM4|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
          Length = 511

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 174/521 (33%), Positives = 253/521 (48%), Gaps = 47/521 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL     P                +I  +  DSR +++G +F A+ G   DGH +I
Sbjct: 1   MRLEDLARVINPS-------EAGGSLALEIEGLYCDSRQVRSGGLFFALRGVATDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             +  +GA A+VV          + +      L VD+ R  +S  A+  YG   +   ++
Sbjct: 54  VASRDRGAVAVVVED-------PSRVPEGMTWLKVDDARLAMSRAAAAFYGNPTDGIPVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ +  R+G+    +G  S            TTP  + L + +  L
Sbjct: 107 GITGTNGKTTTTYLVEAVMARAGIPVAVLGTISYRFGDKTIPAPHTTPESVDLQRTIRDL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SSH L+Q R+DG +   G FTNL RDH+DYH+  ++YF +K RLF EL
Sbjct: 167 VDRGAQGVVMEVSSHALEQRRVDGCRFDVGVFTNLTRDHLDYHRDMESYFESKARLFTEL 226

Query: 238 LPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQV 291
           L  +       A+I  DD Y   +   A +A   V+S G     +   + V    +    
Sbjct: 227 LAADDTKPRRAAVINVDDPYGARL---ASDAVAPVVSYGLSPSVMVRAEMVTFSVDGISG 283

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+        F   L G F +YN L A    +A+G+    +   +E    VPGR E V  
Sbjct: 284 TLVTPLGTIPFHSRLLGRFNLYNILAAVAAGVALGLSPDAIRGGIEGDVRVPGRLERVD- 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N  G  + VDYAHT ++LE +LK +  I +GRII VFGCGGDRD+GKRP+MG+IA   +D
Sbjct: 343 NDHGITVLVDYAHTGDALENVLKTVAEIATGRIITVFGCGGDRDRGKRPVMGEIAGRFSD 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTA 452
           ++IVT DNPR+ED   I  EI+ GI                    GF    +R EAIR A
Sbjct: 403 LSIVTSDNPRTEDAGAIIGEILGGIRSLGLREYGAEELITGFDAKGFAAVESRREAIRLA 462

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +    DVL++AGKGHE   I+    K    D + +    
Sbjct: 463 ARVARPGDVLLLAGKGHEDYQIIGT-MKHHFDDREEVAAAF 502


>gi|160939823|ref|ZP_02087170.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437257|gb|EDP15022.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
          Length = 511

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 149/503 (29%), Positives = 238/503 (47%), Gaps = 32/503 (6%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
               +N+L    ++   + ++ EV  DSR    G +FV + G + D H F+P  +  G  
Sbjct: 3   LRTWLNELDYELVRGSLDVEVTEVVYDSRKAVPGAVFVCMAGTRVDSHRFVPDVLRAGVR 62

Query: 70  AIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPENILAVTG--T 123
            +V       +  ++ +  +      IL     R+ L+L ++  +G     ++ +    T
Sbjct: 63  VLVTERDIEEELAASGLAEHEMGRVTILKTAEARRSLALLSAARFGYPASKMITIGVTGT 122

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++    ++ I + +G     IG T T I+        TTP    L ++ + ++  G 
Sbjct: 123 KGKTTTTHMIKAILEAAGKKVGMIGTTGTVINGQVTPTMNTTPESYELHQSFAKMAEAGC 182

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPK 240
            ++ +E SS G+  HR+DG+    G FTN+  DHI  D H     Y   K RL    L  
Sbjct: 183 QYMIMEVSSQGIKMHRVDGLAFDYGIFTNISPDHIGPDEHADFAEYLCCKSRL----LSM 238

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNKQQV--TI 293
               ++  +D + KE++K A    CR+ +      G          V  +     V    
Sbjct: 239 CRIGLVNLNDGHFKEIVKDA---SCRLYTYCVKEDGETKADFEASNVRYVSRPDFVGTEF 295

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V G  D D    +PG F V NAL A  +C  +G+    ++  LE +  V GR E V T+
Sbjct: 296 DVTGNLDMDVRLGIPGLFNVDNALAALCVCSFLGLPKDRIVHALEHIR-VNGRMEIVYTS 354

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           SR   + VDYAH + S+E +L  +R     R++VVFGCGG+R + +R  MG+I   LAD+
Sbjct: 355 SR-CTVLVDYAHNAVSMESLLTTLRQYHPRRLVVVFGCGGNRSKDRRYSMGEIGGRLADL 413

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +I+T DN R E  E I A+I   I      F+E  +R +AIR++I      D++ V GKG
Sbjct: 414 SIITADNSRYEKVEDIMADIRGSIEKTGGDFVEIPDRRDAIRSSILHAQPGDMIAVIGKG 473

Query: 469 HETVHIVTNGEKKMSVDCDIIRE 491
           HE    + NG +   +D ++I E
Sbjct: 474 HEDYQEI-NGVRHHFLDREVIEE 495


>gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii ATCC 27126]
          Length = 521

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 153/512 (29%), Positives = 235/512 (45%), Gaps = 36/512 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              +   L+ F +   + +I  ++ DSR +     F+AI G++ DG  FIPQAI+ GA  
Sbjct: 7   IQSIKALLAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARV 66

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           I+  +  S       +R ++ I+ +    + LS  A+  Y    + +  +AVTGT+GK+S
Sbjct: 67  ILAQTEDSSAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTS 126

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--------TPSPIYLAKALSYLSSQ 180
               + Q+    G  S  IG   + S F  D            TP  I +   L+     
Sbjct: 127 TVQLLTQLKDALGTRSASIGTLGS-SVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQS 185

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V H + EASSH L Q RL  +K     FTNL RDH+DYH T + Y  AK  L ++  P 
Sbjct: 186 EVRHTAFEASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQ--PG 243

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLS-------------------VGYQGKFIHLKK 281
               ++  +D  SK+    A  +  R+ +                      Q +      
Sbjct: 244 LKAVVLNVNDDESKKWDGAADKSITRIWTGIDESGLDGSGESECLREHNNPQSRHCFATN 303

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                      +           PL G+F + N L A G  +A G     V+  +  +  
Sbjct: 304 ASYHAGGCSFELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDDVVNAVNAITP 363

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VPGR E          +  DYAHT ++LE +L + +  T+G++  VFGCGGDRD+GKRP+
Sbjct: 364 VPGRMEVFPVTGAANLVV-DYAHTPDALEKVLLSAKFHTTGKVWCVFGCGGDRDKGKRPL 422

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNK 458
           MG+ A   AD  ++T DN RSE PE I  +II G+      +   +R +AIR  +E  ++
Sbjct: 423 MGQAAEVGADAIVITTDNSRSESPESIAEDIIAGLKNRELAVSIPDREQAIRHCLEHAHE 482

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            D+++VAGKGHE   I+ + +   +    + R
Sbjct: 483 SDIIIVAGKGHEDYQIIGDKKTNYNERAVVAR 514


>gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 514

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 140/502 (27%), Positives = 248/502 (49%), Gaps = 22/502 (4%)

Query: 11  FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L++ + I P +   + +IN +S +S+ +Q G +F+ + G   DG  F  +AI  GAE
Sbjct: 6   LHKLLDLVGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A ++ SA   ++   +I     +++ DN         +  + +    +  + VTGT+GK+
Sbjct: 66  AAIIGSA--AKERIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++   ++ + ++ G  +   G        F++    TT     L K L+           
Sbjct: 124 TITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPA 244
           +E SSH + Q R+ G +  A  FTNL +DH+DYH   ++YF  K +LF    L  K+  +
Sbjct: 184 LEVSSHSIAQKRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGIS 243

Query: 245 IIYADDAY----SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
           ++  DD +    S ++ KR+     ++    ++   F  +       +          + 
Sbjct: 244 VLNHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREK 303

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                PL GEF + NA+ A  +   +      + + ++     PGR E +  +       
Sbjct: 304 IQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDSDVSRS 363

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +L+D   
Sbjct: 364 LPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQLF 423

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE 
Sbjct: 424 ITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIILIAGKGHED 483

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ +       D  I  ++L
Sbjct: 484 YQILNDKVIN-FDDRKIAYKLL 504


>gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
 gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
          Length = 516

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 157/487 (32%), Positives = 243/487 (49%), Gaps = 28/487 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I  +S DSR +  G +F+A+ G + +G  +I QA+ QGA A+++ +     D      
Sbjct: 28  TPITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALKQGAAAVLIEAGEETADHGQL-- 85

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P++ V    +F+S  A   Y        + A+TGT+GK++ A  +  + +  G  + 
Sbjct: 86  -SVPVIAVPKLSEFVSDIAGSFYAHPSRQMAVTAITGTNGKTTCAQLLANLFELLGEPAG 144

Query: 146 QIGP--TSTISSFAQDNRL---------------TTPSPIYLAKALSYLSSQGVTHVSVE 188
            +G     T+++ A DN++               TTP  + + + L+ L   G   V++E
Sbjct: 145 CVGTVGYGTVANSAADNQVAELLPDTEIAASDILTTPDAVAMQRILAELRDAGARRVAIE 204

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGL Q R+ G+++    FTNL RDH+DYH    +Y  AK RLF   +     A+I  
Sbjct: 205 ASSHGLVQRRIAGLRIDTAIFTNLSRDHLDYHGDLNSYAAAKSRLFA--MSGLKHAVINL 262

Query: 249 DDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD   + ++            S       IH  ++    +     +           PL 
Sbjct: 263 DDNVGRLILANLDPAVDGITYSFENHTADIHCDRIELGASTLSAELVTPWGRGRLTSPLL 322

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+F + N L   G     G     +L    KL  VPGR E V  ++R   + VDYAHT +
Sbjct: 323 GKFNLANLLAVIGAAGMQGFKLDDILHAAAKLKAVPGRMEIVDPSAR-PLVVVDYAHTPD 381

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L+  L+ +R   SG+++VVFGCGGDRD+GKR  MG++A  LAD+ +VT DNPRSE PEK
Sbjct: 382 ALDKALRALRLQCSGKLVVVFGCGGDRDRGKRAEMGRVADQLADLVVVTSDNPRSESPEK 441

Query: 428 IRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           I  +++ GI    +   +R +AIR AI      D++++AGKGHE   IV + ++    D 
Sbjct: 442 IIDQVLLGISRKVLAVADRRDAIRAAINAAAVDDIVLIAGKGHEAYQIV-DAKRLPFSDL 500

Query: 487 DIIREIL 493
              R  L
Sbjct: 501 AEARLAL 507


>gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 495

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 228/476 (47%), Gaps = 18/476 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR +  G  FVAI G    G  F+ QA A GA A++             +
Sbjct: 19  DVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPA-----PDGL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G  +
Sbjct: 74  PVPVDAIAVLGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF    P    A++  DD + + +   + + 
Sbjct: 194 FDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTR--PGLKAAVVNLDDGFGRTLFA-SRDP 250

Query: 264 GCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             R + V  +         + +   HN     ++++G+      PL G F V N L  AG
Sbjct: 251 VLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAG 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+  
Sbjct: 311 ALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHA 370

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
             R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G     
Sbjct: 371 QDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARPD 430

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             I + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 431 AAIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|83748761|ref|ZP_00945776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|207744406|ref|YP_002260798.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724582|gb|EAP71745.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|206595811|emb|CAQ62738.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 514

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 168/486 (34%), Positives = 236/486 (48%), Gaps = 32/486 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA V GN   + DG   IPQAI  GA A++  +   +    A +R
Sbjct: 32  DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSS 144
               IL VD   +     A++ Y     + L    VTGT+GK+S + ++ Q   R G   
Sbjct: 92  ----ILPVDGLAELAGPLAAQWYAVPGPDALRAIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T           TTP  I L ++L+ L   G   V++E SSHGL+Q R DG +
Sbjct: 148 AVVGTLGTGFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGRADGTR 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    ++     A
Sbjct: 208 FDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLL-TGLRA 264

Query: 264 GCRVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG--EFQVYN 314
               +  G  G+          L+      ++   T  V+G         P    F V N
Sbjct: 265 DIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSN 324

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L   G+ +  G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L+
Sbjct: 325 QLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLR 383

Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP++I   
Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDM 443

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G+      ++  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D + 
Sbjct: 444 IADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQEIA-GRKRPFSDQEH 502

Query: 489 IREILG 494
           +R  L 
Sbjct: 503 VRLALA 508


>gi|317501923|ref|ZP_07960107.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896603|gb|EFV18690.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 488

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 155/509 (30%), Positives = 249/509 (48%), Gaps = 37/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E++           E ++  +++DSR +++G +FV I G   DGH ++
Sbjct: 1   MKLSKLLERLEYEVV-------QGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                         +A  + +          ++  +NTR  L+L ++  +G   E +  +
Sbjct: 54  SDVAK-------KGAAAIIAERDIEAPKGVTVIKAENTRYALALMSAAYFGYPAEKLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ I +  G     IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
             +G   V +E SS GL  HR   I    G FTNLG+DHI    H+  + Y   K  LF+
Sbjct: 167 VEEGCDSVVMEVSSQGLMLHRTAEIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQ 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ--QVT 292
           +        I   DD Y +++ +    A C+V + G+  K  +  + V  +       V+
Sbjct: 227 QC----KLGIANIDDPYYEDIFR---GATCKVETFGFSPKADLRAENVNLVSKPGYLGVS 279

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V GK DFD    +PG+F VYN+L A  +C   G+ S  + E L+  H V GR E +  
Sbjct: 280 YHVAGKADFDVEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAH-VKGRIEMIKV 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            S    + +DYAH + SLE +L  ++     R++ VFGCGG+R + +R  MG+++  LAD
Sbjct: 339 -SDDFTLMIDYAHNAMSLESLLTTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + I+T DNPR E+P++I  +I  GI      ++E  +R EAI+ AIE     DV+V+AGK
Sbjct: 398 LTIITSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GHE    +  G K    +  +I E+L  I
Sbjct: 458 GHEDYQEIK-GVKYPMDERTLIAEVLEEI 485


>gi|311742803|ref|ZP_07716612.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314431|gb|EFQ84339.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 503

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 151/507 (29%), Positives = 229/507 (45%), Gaps = 22/507 (4%)

Query: 3   LQDLIY--------KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE 54
           + DL+         +   E+  QL + P    +  +  ++  +     G +F A+ G + 
Sbjct: 1   MTDLLRHRPTTPPSRGLVEVARQLGVRPPPV-DPSVTGLTLGTSDCCPGDLFAAVPGGRA 59

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            G  +  QA  +GA A++   A +   D +       P +VVD+ R+ L    + L+  H
Sbjct: 60  HGAAYADQAAERGAVAVLTDPAGAAVLDATEGAARRLPRVVVDDPREVLGRLGAWLH-DH 118

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
           P +     G +G     +         G +   IG   T I      + LTTP    L  
Sbjct: 119 PTSAFTTLGVTGTQGKTTTTYLAESAVGGTVGVIGTIGTRIGGRPVASSLTTPEAPALQA 178

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +  + V   ++E SSH L + R+DG       F NLGRDH+D+H     YF+AK  
Sbjct: 179 LFAVMREEAVDVCAMEVSSHALVKGRVDGFAFDVAVFLNLGRDHLDFHDDLADYFDAKAM 238

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF         A++  DD + + ++ R  +      S   +        V        + 
Sbjct: 239 LFTP--DHARRAVVNVDDDHGRRLLDR-TDLPVTTFSTDGRAADWRAANVRPHRLGTDLE 295

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +   G + D   PLPG F V NAL         G D A +   +     VPGR E V  
Sbjct: 296 VLGPAGLEIDLSVPLPGRFNVSNALAVVAALAPEGHDPADLAAGIAASPGVPGRMERVD- 354

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +     VDYAH  +++  +L  +R +T GR+++V G GGDRD GKRP+MG+ A   AD
Sbjct: 355 RGQPFTAVVDYAHKPDAVTAVLTALRPVTPGRLVMVIGAGGDRDHGKRPLMGEAAARHAD 414

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + +VTDDNPRSE P  IRA+++ G  G     +E G+R EAI  A+      D +VVAGK
Sbjct: 415 LVVVTDDNPRSERPAAIRADLLAGARGGPAEVVEIGDRREAIAHAVAGARLGDTVVVAGK 474

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           GHE    + +G      D  ++ E+LG
Sbjct: 475 GHEQGQEI-DGVVHPFSDRAVLEELLG 500


>gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 504

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 158/489 (32%), Positives = 240/489 (49%), Gaps = 32/489 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  V+ DSR +  G +F A+ G + DGH F  +A  +GA A+V              
Sbjct: 27  DPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPVEC------- 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
            +   +L+  + R+ ++L A+   G+  E +   AVTGT+GK++V   V+   + + +  
Sbjct: 80  -APARLLLAPSARRAMALAAASFCGRPAERLRMAAVTGTNGKTTVTYLVEACARAAAVPV 138

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G  S       +    TTP    +   L+ +   G     +E SSH L Q R+ GI+
Sbjct: 139 GVLGTISFRFPGAERPASHTTPESTAIQAVLAEMVEAGARDAVMEVSSHALAQERVAGIR 198

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A  FTNL RDH+DYH+  +AYF AK RLF E L     A+I A D +   +  +    
Sbjct: 199 FQAAGFTNLTRDHLDYHRDMEAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQLGPG 258

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                  G  G  +   +V         T            PL G+  + N L AAGL +
Sbjct: 259 PRVWRYGGRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAGLAL 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+    V   L   H  PGR E +  + RG  ++VDYAHT ++L  ++  +R ++  R
Sbjct: 319 GLGLPPEAVARGLAASHGAPGRLERI--DGRGLSVFVDYAHTDDALARMIAALRGLSPRR 376

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           ++ VFGCGGDRD+GKRP+MG      AD+AIVT DNPR+EDP  I A+++ G+       
Sbjct: 377 LVCVFGCGGDRDRGKRPLMGAA-AAAADLAIVTSDNPRTEDPLAIIADVLPGLDRAGKPA 435

Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                      G++ + +R  AI  A+E   + D ++VAGKGHE    V   E++   D 
Sbjct: 436 IGAARARAGEDGYVVEPDRRAAIALAVECAREGDAVLVAGKGHEDYQQVGA-ERRPFSDR 494

Query: 487 DIIREILGL 495
           D  R+ LG+
Sbjct: 495 DEARKALGI 503


>gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
 gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
          Length = 484

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 148/505 (29%), Positives = 237/505 (46%), Gaps = 35/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+        +L+N+++   +Q    ++++++  DSR +Q   +FV I G   DGH F
Sbjct: 1   MKLK--------QLLNEMNYQVLQGDLNQEVSQIDYDSRTVQDRSLFVCIPGANVDGHDF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I Q I +GA  IVV      Q+           + V   R  L+L +   +        +
Sbjct: 53  IDQVINRGARVIVVEHDVPFQE-------GITYIRVKEARLALALLSCAFFEHPSRQMTV 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT GK++ +  ++ I +++      IG   +I +   Q  + TTP    L + +  
Sbjct: 106 IGITGTKGKTTTSYMMESILEKANKKVGIIGTIGSIVNGEFQKTKNTTPESFELQRLMRQ 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +   G  +  +E SS GL  +R+ GI    G FTNL  DHI    H + + Y   K  LF
Sbjct: 166 MVECGCEYCVMEVSSQGLMLNRVAGIDFDYGVFTNLSPDHIGEHEHHSFEHYMACKKMLF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTI 293
           +         I   DD + ++++K A     +  S+  Q      +   +       V+ 
Sbjct: 226 Q----MCKVGIFNRDDEHYEDMIKGAK-CDIKTYSLHQQSDLKASQIHLSQGTGTLGVSF 280

Query: 294 SVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              G  D +F   +PG F VYN+LVA  LC  +GI++  + E L+K+  V GR E V   
Sbjct: 281 QTSGLIDANFETDIPGHFSVYNSLVAIILCHLLGIETNYIKEALKKVR-VRGRVEIVPV- 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + +DYAH + S E IL+ I      RI+ V+G GG RD  +R  +G+I       
Sbjct: 339 GQKYTVMIDYAHNALSFESILQTIMDYQPHRILCVYGAGGHRDVKRRYDVGEIVAKYKAF 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +I+T DNPR E+  +I  +I+ GI      ++   +R EAI  A+E     DV++  GKG
Sbjct: 399 SILTADNPRGENVSQICEDIVTGIHRVGGDYVIIEDRKEAIHYALEHAEANDVILCLGKG 458

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   I+ N E     +  II +  
Sbjct: 459 HEDYQILQN-EPLPFSEKQIIEDYF 482


>gi|78484908|ref|YP_390833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomicrospira crunogena
           XCL-2]
 gi|78363194|gb|ABB41159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 505

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 152/508 (29%), Positives = 246/508 (48%), Gaps = 22/508 (4%)

Query: 1   MK-LQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK L D++ +   PE     S+      E  ++ ++ DSR ++ G  F+A+ G +  G  
Sbjct: 1   MKQLADILSFFKLPE-----SVLVNGATEVDVSALTIDSRQVERGTAFIALQGGQSHGMA 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQ---DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              QAI QGA  I+   A  ++        +    P++ V +  + L+ FA   Y    E
Sbjct: 56  HAEQAIKQGASCILTDRAGLVEFNHSHQQPLNKTCPVIEVGSLNQQLATFAKWFYDAPSE 115

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
             N++ VTGT+GK+S + ++ Q+          +G            +  TT   + L  
Sbjct: 116 RVNVIGVTGTNGKTSSSHYIAQMLTALNQKVALLGTLGNGWFGNLHPSINTTVDVVRLNH 175

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+  + +   +V +E SSH ++  R+ GI     + T + RDH+D+H+T++AY  AK +
Sbjct: 176 LLNGFAEEQADYVVMEVSSHAIELGRIKGIDFDVLAMTQVTRDHLDFHKTEEAYQAAKKK 235

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQV 291
           LF  L       +I ADD   + +     N    V  S       I              
Sbjct: 236 LF--LTYSSRYQVINADDKVGQALFHELSNKDTIVRYSQQTAQADIVCLDSHLSRTGIHG 293

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T +++G    F  PL G+F + N L A  +  A G +   + + L  +  V GR E + T
Sbjct: 294 TFTLQGGSIPFDVPLMGQFNLENVLCAVSVMAACGFEWHRIQKALVFVKAVKGRMELL-T 352

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                 + +DYAHT ++LE ILK ++         + VVFGCGGDRD GKRP+MG+IA  
Sbjct: 353 QPGYPSVLIDYAHTPDALEAILKAVQHHVSDRDATVWVVFGCGGDRDTGKRPLMGEIAET 412

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGK 467
            A+  ++TDDNPR+E P+ I A+I  G+   +    +R EAI  AI+  +  D++V+AGK
Sbjct: 413 YANEVVLTDDNPRTELPDAIVADIKKGMHRSVHVVHDRPEAIAFAIKKASSHDIVVIAGK 472

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGL 495
           GHE    +  G++    D  I++++L +
Sbjct: 473 GHEDYQEI-QGKRWPMSDQKIVKDLLSM 499


>gi|21241545|ref|NP_641127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|24212035|sp|Q8PPB2|MURE_XANAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21106896|gb|AAM35663.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 495

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 154/487 (31%), Positives = 228/487 (46%), Gaps = 16/487 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL        + +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++  
Sbjct: 7   LSQLLPDVALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                      +      + V   R  L + A + +G+  +   ++ VTGT+GK+S    
Sbjct: 67  PPA-----PDGLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQL 121

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  +G     +   A     TTP  +     L+ L   G   V++E SS
Sbjct: 122 LAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDDGAQAVAMEVSS 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+D +      FTNL RDH+DYH     Y  AK +LF         A++  DDA
Sbjct: 182 HALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFAR--AGLKAAVVNLDDA 239

Query: 252 YSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   +      A     V S  +    +  + +   HN     +++ G+      PL G 
Sbjct: 240 FGHTLFAALDPALRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGR 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L  AG   A+    A +   L +L  + GR   +G       + VDYAHT ++L
Sbjct: 300 FNVDNLLAVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDAL 359

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L ++R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I 
Sbjct: 360 EQALSSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIV 419

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G       I + +R  AI  AI M +  D++++AGKGHE    V  G +    D 
Sbjct: 420 ADILRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEVA-GVRHAFDDA 478

Query: 487 DIIREIL 493
            +  + L
Sbjct: 479 LVAAQAL 485


>gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
 gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
          Length = 499

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 149/487 (30%), Positives = 235/487 (48%), Gaps = 34/487 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           QW ++  +  + DSR ++AG IF+A+       K     F   A+  GA A++  +   +
Sbjct: 16  QWPQQPFHGFNLDSRKVEAGQIFIALTSYSQPEKT--RTFAEAALTNGALAVISETELGV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQ 135
            +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  + +
Sbjct: 74  AN----------EWVCSDVRQRMGEWQKRYLQQTDTVKPLRIIAVTGTNGKTTISRLIAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          +G T   I      +  TT   + L   L   +  G T  S+EASSHGL
Sbjct: 124 LISSQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNELHAYAKHGATFASLEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA++ 
Sbjct: 184 EQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFK--FNSLKVAVINLDDAHAD 241

Query: 255 EVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++K A N   +      S+       ++  +          +  +   F    PL G F
Sbjct: 242 LMIKSAKNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGHF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT ++L 
Sbjct: 302 NVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDALI 359

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVTQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDV 478

Query: 487 DIIREIL 493
             +R  +
Sbjct: 479 VEVRSAI 485


>gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 512

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 147/508 (28%), Positives = 230/508 (45%), Gaps = 27/508 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+ +   E +    I   Q  + ++N V  DSR +  G IF  + G + DGH F 
Sbjct: 1   MKLNNLLDRLQGEPLLTEVISSGQAMDVEVNRVVFDSRSVSPGDIFTCVPGGRTDGHGFA 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+ +GA A+ V+   +            P LV  + R F+   A+ LYG       ++
Sbjct: 61  RDAVDRGAVALCVARPLA--------EVQVPQLVSRDPRAFMGRLAATLYGWPARDLKMI 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-TPSPIYLAKALSYL 177
            +TGT+GK++    +  I +  G  +  +G          ++    TP    +   L  +
Sbjct: 113 GITGTNGKTTSTYMMGSILEAQGTRTGLLGTVFYCDGVTFEHADRTTPEGADVQWFLKRM 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +EASSHGL Q R++G +   G FTNL  +H+D+H T+ AYF+AK  LF   
Sbjct: 173 RDNSCQACVMEASSHGLKQGRIEGCEFDGGLFTNLTPEHLDFHLTEDAYFDAKRLLFNRY 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +       A D     ++    +     RV+                 ++ + +T+ V
Sbjct: 233 MKEGWVGASNASDPRGAALLMEHPDRMHGYRVIGSNESPVEGCWCGRIRSYDLEGMTLEV 292

Query: 296 EGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                     +   PL G +   NA+    L + +GI    V+  L  +  VPGR E   
Sbjct: 293 YDPRGRLAFREVSLPLIGTYNGENAMGVIALSMGMGIGGDAVVRGLASMPQVPGRLETYR 352

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +R   +  DYAHT + LE +L  +R +T G++ VVFG GG+R    RP +G +A  LA
Sbjct: 353 FPNRVVGVI-DYAHTPDGLEKVLGALRGVTVGKLWVVFGHGGERTGSHRPKLGAVAASLA 411

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFI--------EKGNRIEAIRTAIEMLNKQDVL 462
           D A+VT DNPRSEDP  I A+I+ GI               +R EAIR A++     DV+
Sbjct: 412 DRAVVTMDNPRSEDPASIAAQIVSGISHARAREGFQHWVILDRGEAIRYALDNAEIGDVV 471

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            + GKG E   + ++         ++ R
Sbjct: 472 AITGKGPERFILFSDRRVPFEDSAELRR 499


>gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 478

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 154/501 (30%), Positives = 240/501 (47%), Gaps = 37/501 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++ K     IN +     +  + +I  V++DSR I+ G +FVAI G + DGH FI
Sbjct: 1   MNLTDILDK-----INYIDYT--KNNDSEITNVTNDSRKIKKGGVFVAISGMEFDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AIA GA  IVV+   +  D       +   + V ++R  L+  ++ +     + +  +
Sbjct: 54  DKAIANGANTIVVTEDVTEID-------DINYIKVKDSRVALAQISNVVCDFPSKKLRVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ AS +  I +        IG   T I+    +   TTP    + K L   
Sbjct: 107 GVTGTNGKTTTASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLS 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  VE SSHGL  HRLDGI      F NL  +H+D+H+  + YF+AKM LFE  
Sbjct: 167 VEKKIDNAVVECSSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFENA 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
             K +      DD Y ++   R  +A     +   + +     + V  I  K    I   
Sbjct: 227 KKKIA----NVDDEYGRKAKARFEDA----YTFSLENESDFKAENVELIDGKMHFEI--- 275

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K+  F+      F VYN++ A      +G +   + + LE    V  RFEFV  N  G 
Sbjct: 276 -KNVKFVLNRFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVK-NEMGI 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +D+AHT  + E I K++      R I V+G  GDR    R  +GKI+ +    ++VT
Sbjct: 334 NIVIDFAHTPKAFENIYKSVPN--DKRKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVT 391

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            D+P+ +  E I  +II GI      ++   +R  AI+ AIEM N+ D +++ GKG E  
Sbjct: 392 TDDPKFDTYENIADDIISGIEEENGEYVRIKDRKSAIKHAIEMANEGDFVLLLGKGQENF 451

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +   EK    + + + E+L
Sbjct: 452 IKLKGNEKTPYSEKETVNEVL 472


>gi|149186207|ref|ZP_01864521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
 gi|148830238|gb|EDL48675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
          Length = 492

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 184/503 (36%), Positives = 264/503 (52%), Gaps = 23/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         +L     I      E  +   + D+R +  G +F A  G + +G  FI
Sbjct: 1   MKLS--------KLCVGAGIDCPSGAEINVTGFAIDNRKVAPGTVFGAFQGAQVNGEDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P AI         + A ++   +A        +  D  RK  +  A+  +   PE+I+AV
Sbjct: 53  PAAI--------EAGAVAVVARAAAKVEGALHIASDIPRKCFAELAAGFFTPAPEHIVAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +QI + SG  +  IG    T    +    LTTP  +     +S L+ 
Sbjct: 105 TGTNGKTSCVEMTRQIWRMSGERAASIGTLGVTTPDESVSTGLTTPDIVTFLSNMSGLAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV+ EASSHGL Q+R +G+ + A  FTN  RDH+DYH   + YF AKMRLF+E++ 
Sbjct: 165 EGVTHVAYEASSHGLSQYRNEGVAVEAAGFTNFSRDHLDYHADMEDYFAAKMRLFDEVVS 224

Query: 240 KESPAIIY---ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             + A+I+    +  ++  V+  A   G  V++VG QG+ I L         Q +T+   
Sbjct: 225 DGATAVIWMGAGESGWNARVVDHAKQRGLTVMTVGEQGEDIRLTHREPTQLGQSLTVEHA 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G +     PL G +QV NALV+ GL +A GID++ V + + +L  V GR E       G 
Sbjct: 285 GTERTINLPLIGAYQVSNALVSGGLALATGIDASRVWDAVARLQPVRGRLERAVIAPSGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +Y+DYAHT ++LE  +  +R   +GR+I VFG GGDRD GKR  MG+ A   +D+ IVT
Sbjct: 345 PVYIDYAHTPDALEAAIAALRPHVTGRLITVFGAGGDRDHGKRAPMGEAAAKASDLVIVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPR EDP  IR  ++ G     E   R EAI  AI    K D++++AGKGHET  I+ 
Sbjct: 405 DDNPRGEDPADIRRAVLEGAGEAREVAGRREAIHAAIAEAGKDDIVLIAGKGHETGQIIG 464

Query: 477 NGE---KKMSVDCDIIREILGLI 496
           +GE        D ++ RE   LI
Sbjct: 465 SGENMRVHPFDDVEVARECAALI 487


>gi|327404195|ref|YP_004345033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
 gi|327319703|gb|AEA44195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
          Length = 486

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 157/497 (31%), Positives = 242/497 (48%), Gaps = 29/497 (5%)

Query: 9   KDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL     I   +   +  ++ + SDSR   AG +F+A+ G + D H FI Q I +G
Sbjct: 2   KTVNELAKATEITQWIGPTDVVVSALVSDSRKALAGTLFIAVKGTQVDAHDFISQVIEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              IV             +  +  +LVV N+   L   A   Y  +P   L + G +G +
Sbjct: 62  CRVIVAERVIE-------VPEHVTVLVVPNSALALGELAHAFY-DYPSRSLELVGVTGTN 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
              +    +        +++G  ST    I      +  TTP  I L   L+ +  QG +
Sbjct: 114 GKTTTTTLLHDLYTELGYKVGLLSTVVNLIGKEVIPSTHTTPDQIALNALLADMVDQGCS 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H  +E SSH + QHR+ G+    G+FTN+  DH+DYH T + Y  AK   F+EL  K++ 
Sbjct: 174 HCFMEVSSHAISQHRIAGLVFKGGAFTNITHDHLDYHGTFKEYIAAKKTFFDEL-KKDAF 232

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD      M    N   +V + G +       KV        + +++ G   +  
Sbjct: 233 ALVNADDKNG---MVMVQNTKAKVSTFGLKTHADFKAKVLENSF-SGLLLTING--IELW 286

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+F  YN     G+   +G DS  VL  L KL  V GRF+F  + +      VDYA
Sbjct: 287 TRLIGDFNAYNIATVYGISQLLGSDSTEVLTVLSKLEAVDGRFQFTKSETD-ITAVVDYA 345

Query: 364 HTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++LE +LK I  I +   ++I V GCGGDRD  KRP M +IA +L++  I+T DNPR
Sbjct: 346 HTPDALENVLKTIENIRTRNEQVITVVGCGGDRDALKRPEMARIACELSNKVILTSDNPR 405

Query: 422 SEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           +EDP +I  ++  G+        +   +R +AI+TA+ +   +D++++AGKGHE    + 
Sbjct: 406 TEDPAEILKQMEAGVGAHQSMKVLTILDRDQAIKTAVSLAQPKDIILIAGKGHEKYQDI- 464

Query: 477 NGEKKMSVDCDIIREIL 493
           NG K    D D+++   
Sbjct: 465 NGVKHPFDDFDVVKNYF 481


>gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia
           minopimelate ligase [Stenotrophomonas maltophilia K279a]
          Length = 502

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 150/484 (30%), Positives = 220/484 (45%), Gaps = 17/484 (3%)

Query: 14  LINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++QL     +   +  +  +  DSR ++ G  FVAI G    G  F+ QA A GA  I+
Sbjct: 6   LLSQLLPDVALAGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGASVIL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
                  +  +         + V   R  +   A + +G    ++  + VTGT+GK+S  
Sbjct: 66  FEPPAPAELPAPADA-----IAVPGLRARMGAMADQFHGAPSRSMAMVGVTGTNGKTSTV 120

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + Q     G  S  IG     +    +    TTP  + +   L+ L   G   V++E 
Sbjct: 121 QLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEV 180

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH LDQ R+D +      FTNL RDH+DYH    +Y  AK RLF    P    A+I  D
Sbjct: 181 SSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHR--PGLKAAVINLD 238

Query: 250 DAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DA+  ++          +   S G     +  + +          + ++G+      PL 
Sbjct: 239 DAFGGQLFAGLPAGVQPIGLSSRGATDASVRAEALQLDGRGIAFELVIDGQRAAVQSPLL 298

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L  AG   A G     + E L  L  + GR   +G       + VDYAHT +
Sbjct: 299 GRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPD 358

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L ++     G +  VFGCGG+RD GKRP M  IA  LA+  IVTDDNPR ED + 
Sbjct: 359 ALEQALDSLHGHLQGTLFCVFGCGGERDTGKRPQMATIAERLANKVIVTDDNPRGEDGDV 418

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I+ G         + +R  AI  A++     D++++AGKGHE    V NG +    
Sbjct: 419 IVADILAGFTDASAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHEPYQEV-NGVRHDFD 477

Query: 485 DCDI 488
           D ++
Sbjct: 478 DTEV 481


>gi|294627720|ref|ZP_06706302.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598072|gb|EFF42227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 491

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 154/487 (31%), Positives = 228/487 (46%), Gaps = 16/487 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL        + +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++  
Sbjct: 3   LSQLLPDVALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                      +      + V   R  L + A + +G+  +   ++ VTGT+GK+S    
Sbjct: 63  PPA-----PDGLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQL 117

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  +  +G     +   A     TTP  +     L+ L   G   V++E SS
Sbjct: 118 LAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLREDGAQAVAMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+D +      FTNL RDH+DYH     Y  AK +LF         A++  DDA
Sbjct: 178 HALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFAR--AGLKAAVVNLDDA 235

Query: 252 YSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   +      A     V S  +    +  + +   HN     +++ G+      PL G 
Sbjct: 236 FGHTLFAALDPALRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGR 295

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L  AG   A+    A +   L +L  + GR   +G       + VDYAHT ++L
Sbjct: 296 FNVDNLLAVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDAL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L ++R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I 
Sbjct: 356 EQALSSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIV 415

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G       I + +R  AI  AI M +  D++++AGKGHE    V  G +    D 
Sbjct: 416 ADILRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEVA-GVRHAFDDA 474

Query: 487 DIIREIL 493
            +  + L
Sbjct: 475 LVAAQAL 481


>gi|329895274|ref|ZP_08270916.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
 gi|328922396|gb|EGG29739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
          Length = 487

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 151/490 (30%), Positives = 243/490 (49%), Gaps = 19/490 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL   L       R+ KI  + +DSR    G +F+A+ G+   G  F+  A+A+GA  
Sbjct: 8   LSELCADLGYC---VRDAKITGIVTDSRAASLGSLFIAVPGHTHRGVDFVSDAVARGASG 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSS 128
           I+     +L D       +  ++VV + R    + A R +   K     LAVTGT+GK+S
Sbjct: 65  IIADEEMNLPD-------HIGLVVVSDVRAISGIVAMRFFETDKQELRTLAVTGTNGKTS 117

Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               + Q+      ++  +G     + +    +  TTP  + + + L+  ++Q V   ++
Sbjct: 118 TVQLLAQLLGELDQAAATVGTLGFQLPTGFSPSSNTTPDVVEIHRFLASAAAQNVRWAAL 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL QHRL G+ +   + TN+ +DH+DYH T   Y  AK ++    L      ++ 
Sbjct: 178 EASSHGLVQHRLTGLNITTAAITNITQDHLDYHGTMTEYIAAKAQILA--LSGLRAVVLD 235

Query: 248 ADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            D+   + +  +   N      ++G       +       +    T+ ++G ++    PL
Sbjct: 236 LDNPEVRALRPQVPANVQVLGFTLGEVADADAVVVAQYDADGTTATVRLDGFEYRLRLPL 295

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GEF + N L A  +  A G+    ++    +L  VPGR E VG +S    +YVDYAHT 
Sbjct: 296 VGEFYLRNTLTALFMLRAEGLRFEDLVAAAGRLRGVPGRLERVGLDSD-VAVYVDYAHTP 354

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++  +L+ +R      + VVFGCGGDRD+ KRP+MG+ A + AD  ++T DNPR+EDP 
Sbjct: 355 DAIARVLQVLRPTVKNDLWVVFGCGGDRDKSKRPLMGRAAAEGADWVVLTSDNPRAEDPS 414

Query: 427 KIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           KI  +I  G     +   +R  AI +AI   +  D LV+AGKGHET  I+ +       D
Sbjct: 415 KILDDIQVGCAHARLVIEDRAVAIESAIMAASPGDTLVIAGKGHETEQIIGDVAFP-FSD 473

Query: 486 CDIIREILGL 495
            ++ +  L L
Sbjct: 474 REVAQAALNL 483


>gi|224476113|ref|YP_002633719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420720|emb|CAL27534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 494

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 143/494 (28%), Positives = 233/494 (47%), Gaps = 28/494 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  K   + +       +   +R+I ++++DSR  + G +FVA  G   D H F 
Sbjct: 1   MKANELFEKIKSKQV-------LGSLDREITDITTDSRTAEEGSVFVATKGYTVDSHKFC 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              + QG + IVV S   ++        +   ++V  TR+  SL   +LY    E +   
Sbjct: 54  QDVVNQGCKLIVVESEQEVE-------GDVTQVIVPKTRRVASLIVHKLYNYPSEQLTTY 106

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
             TGT+GK+S+A+ + QI ++ G  S  +G     I+        TTP  + L K +   
Sbjct: 107 GVTGTNGKTSIATMIHQIHRKLGKGSAYLGTNGFQINETVTKGENTTPETVTLTKKIHEA 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   +++E SSHGL   RL G++     F+NL +DH+D+H T +AY +AK  LF +L
Sbjct: 167 VEAGAESMTLEVSSHGLALGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQL 226

Query: 238 ---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTI 293
              L KE  A++ ADD +S+ +          V + G ++      +++           
Sbjct: 227 GEDLRKEKFAVVNADDDFSEYL---TSVTPYEVFTYGIHRPAQFKAERIQESLTGASFDF 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                 F    P  G+F + N + A       G     +++ + +L  V GR E V   S
Sbjct: 284 VTPDGTFHVDSPYVGKFNISNIMAAMTAVWGTGTPMQEIVDVVSQLEPVEGRLE-VLDPS 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + +DYAHT++ +E ++  ++     ++I + G  G+RD  K P MGK A   AD  
Sbjct: 343 LPIDLIIDYAHTTDGIEKLIDAVKPFVKQKLIFLIGMAGERDLTKTPEMGKQASR-ADYV 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNP ++DP+ + AE+  G     ++E  +R E IR AI++    D +V+A KG E 
Sbjct: 402 IFTPDNPANDDPKMLTAELAKGATHDNYVEYTDRAEGIRHAIDVAEPGDTVVLASKGREP 461

Query: 472 VHIVTNGEKKMSVD 485
             I+    K    D
Sbjct: 462 YQIMPGHVKVPHRD 475


>gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
 gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
          Length = 502

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 161/490 (32%), Positives = 243/490 (49%), Gaps = 19/490 (3%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L    ++  ER I+ V+ DSR ++ G++F+A+ G    G  F  +A++QGA AI+     
Sbjct: 16  LEPLGIEADERPIHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQGAAAILWQPTP 75

Query: 78  SLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
              D + + R      P + V +    + + A+R YG    N  ++ VTGT GK+SV+ F
Sbjct: 76  GFDDQALSARCAKQAVPCIAVHSLHAQVGIIAARFYGDPGANMTVIGVTGTDGKTSVSQF 135

Query: 133 VQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +     R       +G           +   LTTP PI L   L+ L ++    V +E S
Sbjct: 136 IAHALGRKEYRCGILGTLGCGLPGHLRRVTSLTTPDPITLQCELNQLRARHAQAVVIEVS 195

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH LDQ RL G+       TNL RDH+DYH +Q AY  AK  LF+   P+    ++  DD
Sbjct: 196 SHALDQQRLAGVGFDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQR--PELHTVVVNVDD 253

Query: 251 AYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            + + +  RA     RV+     G +   +   ++ A  +  ++ +   G        L 
Sbjct: 254 DFGRSL--RASVRHARVIGYSLAGIETAQLRCLRLAAQSDGLRLLLDAGGCRAAVRVGLL 311

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F   N L A G  +A+ +     L+ L  L  V GR E  G+  R   + +DYAHT  
Sbjct: 312 GRFNAANVLAALGALLALDVPLREALQRLSLLQPVSGRMERYGSEGR-PTVVIDYAHTPA 370

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L+  L  +R   +GRI  VFGCGGDRD+GKRP+MG +A   AD  I+T+DNPR+E+P +
Sbjct: 371 GLQAALAAMREHFAGRIWCVFGCGGDRDRGKRPLMGALARASADRIIITNDNPRTENPRR 430

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I AEI  G           +R EA+  +I     +D ++VAGKGHE   ++   +   S 
Sbjct: 431 IIAEIQAGAGADSRVRVIEDRREAVIHSIRAAAPEDAILVAGKGHEEYQLIGTRQLPYS- 489

Query: 485 DCDIIREILG 494
           D + +++ LG
Sbjct: 490 DRETVKQALG 499


>gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           denitrificans OS217]
 gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella denitrificans OS217]
          Length = 502

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 149/516 (28%), Positives = 232/516 (44%), Gaps = 39/516 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L D++   F               E   + +S DSR +  G +F+A+ G++ DG  +I
Sbjct: 2   MRLSDILAPWF----------HYAGVESA-SSMSLDSRKVTQGCLFIALPGHQVDGRAYI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVD--NTRKFLSLFASRLYGKHPEN 116
            QA AQGA A +V +             +  TP  VV+       LS  A++ Y   P+ 
Sbjct: 51  EQAKAQGAVAALVHTDDPDSHGKVENLGSGITPWPVVNFFQLSSQLSAVAAQFYPLTPQK 110

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
             ++ +TGT+GK+SV+  + Q+    G  +  +G     +     D+  TT   + +   
Sbjct: 111 MALIGITGTNGKTSVSQLIAQLTSLLGGKAAVMGTLGNGLWGQLVDSGNTTADAVTVMAQ 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L     +G    ++E SSHGL Q R+  +      FTNL RDH+DYH    +Y +AK RL
Sbjct: 171 LHDFDVKGADICAMEVSSHGLVQGRVTAVPFDIAVFTNLTRDHLDYHGDMASYASAKKRL 230

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---Q 290
           F+   P    A++  DD    +  +       +  SV    K  +        +      
Sbjct: 231 FQ--FPSLKYALLNLDDDTGAQWFEELAATKRKGFSVSPNAKACYYTDKLHFDDAGVQGD 288

Query: 291 VTISVEGKDF------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                 G++         + PL G F + N L A       G+  A +L    KL  V G
Sbjct: 289 FYYHDFGENAVSQHKARLVSPLLGAFNLSNLLAAIAALHLSGVAMADLLAVTPKLVPVAG 348

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E      +G  + VDYAHT +++E  LK +R    G++  VFGCGGDRD+GKRP+M +
Sbjct: 349 RMERFSLP-QGASLVVDYAHTPDAIEQALKALRIHCHGQLWCVFGCGGDRDKGKRPLMAQ 407

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDV 461
            A   AD  +VT DN RSEDP  I  +++ G+      + + +R+ A++    +    D+
Sbjct: 408 AAERFADKLMVTSDNARSEDPSAIIGDVLKGLTQPENALMEVDRVSAVKRVATLAKAGDI 467

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           +++AGKGHET   +                 L L L
Sbjct: 468 VLLAGKGHETYQEIAGQRLDYD------ERALALTL 497


>gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
 gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
          Length = 495

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 163/493 (33%), Positives = 251/493 (50%), Gaps = 18/493 (3%)

Query: 9   KDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           ++ P L+    +          I  +  DSR++Q G +FVA+ G   DG  ++ QA A G
Sbjct: 10  RELPALLMGTGADLAAGLPNIDIAGLCLDSRNVQPGELFVALRGGSHDGRAYLSQAAAAG 69

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
           A A +V      ++         P +V+   R  L   A R Y      +   AVTGT+G
Sbjct: 70  AVAALVEDELPGEEPP------LPCVVIPGLRHKLCEIAGRYYRDPSRQMHVAAVTGTNG 123

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++V+    Q+ + +G     IG    ++++  QD+  TTP  I + + L+  + Q V  
Sbjct: 124 KTTVSQLFAQLLRSAGYDCGVIGTLGASLTAGVQDSVHTTPDSIAMQEILASWAGQAVPF 183

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           VS+E SSH LDQ R++G+ + +  FTNL RDH+DYH   ++Y  AK RLF         A
Sbjct: 184 VSMEVSSHALDQGRVNGLDIDSAIFTNLTRDHLDYHGDMESYGAAKARLFA--FESLRTA 241

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDF 302
           I+ +DD +S  +  R  + G  VL  G       + L  +       Q+ +     +   
Sbjct: 242 ILNSDDPFSDVLAGRM-SLGVAVLRYGLNDASADVRLSNLRLHSAGMQMRLESPWGNGTL 300

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G+F   N L A    +  G+    V+   E L  VPGR E + + + G  + VDY
Sbjct: 301 NCPLLGKFNAVNLLAALTAALQAGVPFDAVMTAAESLQPVPGRMEPIHSAA-GPLVVVDY 359

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++L  +L  +R    GR+I VFGCGGDRD+GKRP+M +    +AD A++T DNPRS
Sbjct: 360 AHTPDALRHVLIALREQCKGRLIAVFGCGGDRDKGKRPLMAEAVAAIADRAVITSDNPRS 419

Query: 423 EDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           EDP  I A+I   + G +    +R +AI  AIE    +D +++AGKGHE   I+ + ++ 
Sbjct: 420 EDPLAIIADIEAAMAGEYHVCADRGDAIAMAIESAAPEDCVLIAGKGHEDYQIIGD-QRF 478

Query: 482 MSVDCDIIREILG 494
              D  + +++L 
Sbjct: 479 TFSDSAVAQQVLA 491


>gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 534

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 154/512 (30%), Positives = 264/512 (51%), Gaps = 33/512 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL DL+          L +      + +I+ +S DSR  + G +F  I G K+DGH ++
Sbjct: 32  IKLADLVKPL-------LKVKVFGKLDGEISGLSYDSRFTKPGQLFTCIKGTKDDGHKYL 84

Query: 61  PQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
              +++G  A+V      S +      + + P+++V ++RK  ++ AS+ Y    +++  
Sbjct: 85  EDVLSKGVSAVVAQYDCLSSEQKKLLTQIDIPVILVTDSRKAFAILASKYYNYPGDSLRV 144

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP----SPIYLAKA 173
             VTGT GK++  + + ++         + G   TI++   D     P     P+ L + 
Sbjct: 145 TGVTGTKGKTTTVNLIDKLLSE--GKEVKTGMIGTINARIDDQEEKQPTTTPGPLELNEL 202

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  + + G +HV++E SSH + Q R+ G+ L    +TNL  +H+DYH     Y   K R+
Sbjct: 203 LGRIENSGASHVTLEVSSHAISQLRIAGVDLDIAVYTNLAPEHLDYHTDMDEYKRTKGRI 262

Query: 234 FE------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIH 286
           F       E   K   A+I  DD Y+  ++++      +VL+ G+ +   +  K +    
Sbjct: 263 FSFQGLKPEKNDKPKLAVINLDDKYASYMLEQ---PAVQVLTHGFDENAHVKGKIINTAE 319

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++ I+    +F    PL G+F  YN L A  + +  GI ++ +   LE+   +PGRF
Sbjct: 320 TFTELKITSPWGNFTVKTPLIGKFNCYNLLAAITVALFEGIPASKIQTILEQPINIPGRF 379

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +    +   + VD+AHT++SL+ +L+++R + SG+I VVFGCGG+RD+ KRP MG+ A
Sbjct: 380 ERIDL-GQEFTVVVDFAHTTDSLQEVLQSLRQMVSGKIGVVFGCGGERDKSKRPKMGRAA 438

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDV 461
            DL D   +T DNPR+EDP+KI  +I+ G           + +R +AI  ++    + D 
Sbjct: 439 SDLGDKIFITSDNPRAEDPQKIVQDILSGCDVNNNEKIQIELDRAQAIEKSLNWAREGDA 498

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHE    + NG+     D +I RE L
Sbjct: 499 VLIAGKGHEATQEI-NGKVINFDDREIAREKL 529


>gi|148241723|ref|YP_001226880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
 gi|147850033|emb|CAK27527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
          Length = 494

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 237/480 (49%), Gaps = 13/480 (2%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P Q  +  + + S DSR I+ G +FV + G + DG  F   A+ QGA A V+    + Q
Sbjct: 19  VPQQLPDPVVTDFSCDSRRIRPGTLFVGLPGGRVDGGSFWRAALQQGATAAVIGPDAAQQ 78

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA---SFVQQIC 137
           +  A      P+LVV +     +   +  +  HP + L++ G +G +        ++ + 
Sbjct: 79  EPPA---PGDPVLVVADPVAAAAGRLAAAFWNHPSDQLSLIGVTGTNGKTTTTHLIEHLA 135

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  +  +G  +      +++   TTP    L   L+   + G +  ++E SSH LDQ
Sbjct: 136 LACGSPTALMGTLANRWPGHSRNAVHTTPFADQLQADLAAAKAAGCSMAAMEVSSHALDQ 195

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+ G +     FTNL +DH+DYH T + YF AK +LF     K   A++ +DD + +++
Sbjct: 196 SRVAGCRFSGAVFTNLSQDHLDYHPTLEDYFEAKAQLFAAPYLK-GQAVVNSDDLHGRQL 254

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +R  +   R  S+      + +  +       +  +     D  F  PL G F + N L
Sbjct: 255 AQRLGDQCWRS-SLEDSSAELFMDGLQFSATGVKGVLHGPSGDVPFQSPLVGRFNLMNLL 313

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G+ +  G+    +L+ LE  + VPGR E V   S    + VDYAHT + L+  L+  
Sbjct: 314 QAVGVLLQHGLPCDGLLQALESFNGVPGRMERVPHRSDQPAVLVDYAHTPDGLDNALQAA 373

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    G++I VFGCGGDRD+ KRP MG IA  LAD  +VT DNPR+EDP++I  +++ GI
Sbjct: 374 RPFAEGKLICVFGCGGDRDRSKRPQMGAIAAQLADELVVTSDNPRTEDPQQILDDVVAGI 433

Query: 437 PGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P     +   +R  AI  AI      D++++AGKGHE   I+    K    D +   + L
Sbjct: 434 PAESACVVVADRAAAIAQAIGQAKAGDLVLIAGKGHEDYQILGT-TKVHFDDREEAAKAL 492


>gi|254427286|ref|ZP_05040993.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
 gi|196193455|gb|EDX88414.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
          Length = 490

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 156/500 (31%), Positives = 234/500 (46%), Gaps = 25/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ L+              P       ++ +  DSR++  G +F+A+ G   DG  FI
Sbjct: 2   MTLQQLLPDV---------TLPASAAGVVLSGLQLDSRNVAPGDLFLAVPGVASDGRQFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+     A  V+     + F        P + +    + +   A+R YG+     N++
Sbjct: 53  SQAV----AAGAVAVLADAETFEIQQDQAVPCVALPELGRRVGTLAARWYGEPGAAMNVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+  F++      G     +G     +    Q    TTP PI L   L+ +
Sbjct: 109 GVTGTNGKTSITWFLRDALNALGHRCALVGTLGLGLKGDEQTTGHTTPDPITLQAGLARV 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V++E SSH LDQHRL    +    F+NL RDH+DYH   +AY  AK  LF   
Sbjct: 169 RDAGADCVAMEVSSHALDQHRLGSTPVPVAVFSNLSRDHLDYHGDMEAYLAAKSVLFTRD 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
             K   A+I  DD  +  ++    + G R ++ G Q G  +    V    +  +  ++V 
Sbjct: 229 GVK--LAVINCDDPAAYSLIGCLAD-GVRCVTFGDQPGATVRCAAVTFTADGMRAELTVG 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G       PL G F + N +  AG+    GI +A +   L  +  VPGR E V       
Sbjct: 286 GDPLTVTLPLFGRFNLSNVMAVAGILHGQGISTASLGGALAAVTAVPGRMEPVQQPG-CP 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE  L+  R    GR+  + GCGGDRD GKRP M  +A   AD  ++T
Sbjct: 345 TVIVDYAHTPDGLEKALQACRAHFHGRLFCIVGCGGDRDTGKRPQMAAVAERGADRVVLT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPRSEDP++I  ++  G+           R +A+   ++  +  DV+++AGKGHE   
Sbjct: 405 SDNPRSEDPQQIIDDMRAGLADAASVQAIVERAQAVMDTVQAASDGDVILLAGKGHEDYQ 464

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            V +G +  S D D+ R+  
Sbjct: 465 EV-DGVRYPSDDRDLARKAF 483


>gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
 gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
          Length = 505

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 168/524 (32%), Positives = 253/524 (48%), Gaps = 50/524 (9%)

Query: 1   MKLQDLIY-KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+     PEL     I        +I  +  DSR +  G +F A+ G K DG  F
Sbjct: 1   MKLAQLLNCLASPELSGDAGI--------EIESLCYDSRKVAPGALFFALRGVKSDGTEF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           +  A+  GA AIV     +             ++VV + R  +SL A+  YG       +
Sbjct: 53  VEAAVKGGAVAIVADRPCAC--------PGVTVVVVPDPRLAMSLMAAAFYGTPTRGIPV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    V+ I +++G+ +  +G  S            TTP  + L   L  
Sbjct: 105 VGITGTNGKTTTTYLVEGIMEQAGVPAAVLGTISYRFGETNIPAPNTTPESVDLQAILRE 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L   G     +E SSH L+QHR+DG       F+NL RDH+DYH   ++YF +K+RLF +
Sbjct: 165 LVDHGARGAVMEVSSHALEQHRVDGCLFDVALFSNLTRDHLDYHLDMESYFKSKLRLFTD 224

Query: 237 LLPKES-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQ 290
           LL   +      A++  DD +   + ++A      VL+    GK  I + +     +  +
Sbjct: 225 LLAPTAEKPLRRAVVNLDDPFGPRIAEKAAAP---VLTYSMTGKADISVAEAEFSVDGIR 281

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             ++    +      L G F +YN L A G  +A+G     +   +E    VPGR E V 
Sbjct: 282 CRLNTPVGEISLASELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVE 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G  + VDYAHT ++LE +L  +  + + RII +FGCGGDRD+GKRP+MG+IA   +
Sbjct: 342 TEE-GITVLVDYAHTGDALENVLSTVSELKTDRIITIFGCGGDRDKGKRPVMGEIAARYS 400

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRT 451
           D+A++T DNPR+EDP+ I  ++  GI                    GF    +R  AIR 
Sbjct: 401 DLAVITSDNPRTEDPQAILEDVRAGILPLGLREYGLEELAAGFHEKGFATIESRRAAIRA 460

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           A+   +  D++++AGKGHE   IV   EK    D +     L L
Sbjct: 461 ALLAAHPGDIVLLAGKGHEDYQIVGT-EKFHFDDREEAAAALKL 503


>gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
 gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
          Length = 495

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 155/490 (31%), Positives = 229/490 (46%), Gaps = 16/490 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+  
Sbjct: 7   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                     ++      + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 67  PPAPQ---GVSVPDGA--IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G+ S   G     +         TTP  + L + L+ L  +G   V++E SS
Sbjct: 122 LAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD 
Sbjct: 182 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QDVQAAVINVDDP 239

Query: 252 YSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++        RV     G+    +  + +          + +         PL G 
Sbjct: 240 FGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGR 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++L
Sbjct: 300 FNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDAL 359

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+  VTDDNPR ED + I 
Sbjct: 360 GQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIV 419

Query: 430 AEIIHGI--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G   P  ++   +R  AI  AI + + +DV+++AGKGHE    V  G +    D 
Sbjct: 420 ADILAGFARPNVVKVQRDRSAAIAAAIGIASAEDVVLIAGKGHERYQEVA-GVRHPFDDT 478

Query: 487 DIIREILGLI 496
           ++ R +L  +
Sbjct: 479 EVARRVLAAM 488


>gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 498

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 147/478 (30%), Positives = 235/478 (49%), Gaps = 17/478 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR +  G +F+A+ G K+DG  FI QAI + A AI+  +    +        N
Sbjct: 22  ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAVAILCETKKKDKHGIFKYIKN 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++      + +SL A+R Y +  + +  + +TGT+GK++V   + Q     G  +  +
Sbjct: 82  VILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTKTATM 141

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G       +  Q    TT SPI++   LS +  +    V++E SSHGL QHR+  +    
Sbjct: 142 GTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEVPFYI 201

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+DYH+  + Y +AK  LF     K    I+ ADD Y K  +K+  N    
Sbjct: 202 AIFTNLTQDHLDYHENMEKYESAKWLLFS--THKVKKIILNADDQYGKIWLKKLLNFYTV 259

Query: 267 VLSV------GYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +++       Y  K+I+   +   +N    +T             L G F V N L++ 
Sbjct: 260 AVTIQNRKQKKYSTKWINATNIEQNNNNSIYITFESSWGTGRISSCLIGRFNVTNLLLSL 319

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              + +G   + ++   EK+  V GR E   +  +     +DYAHT ++L+  L  I + 
Sbjct: 320 ACLLELGYSLSDLIHTSEKIIPVQGRMELF-SYVKKPTFIIDYAHTPDALKKTLNAIHSH 378

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
               I  +FGCGG+RDQ KRPIMG IA  ++D  I+T+DNPR+E  +KI  +I++G    
Sbjct: 379 YQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQDILNGCKNK 438

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +   +R +AI  A        ++++AGKGHE   I+ N     S D  I+  +LG
Sbjct: 439 EKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKIVLNLLG 495


>gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
 gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
          Length = 485

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 139/502 (27%), Positives = 241/502 (48%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++      I+  +    +    ++  ++ DSR+I  G IF+A  G + DG+ F 
Sbjct: 1   MNLKELLHN-----IDIDAKVYGKISPIEVRNLTKDSRNIGFGDIFIANKGKRCDGNDFA 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+  GA A+V S              +   ++  N     +  A++ Y      +  +
Sbjct: 56  SLAVENGAIAVVSS--------IYNPFLSVVQIISPNLSLLEAQLAAKYYNYPSRKLCVV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  ++ +       S  IG    I  +    +  TTP    L K L+ +
Sbjct: 108 GITGTNGKTTVSHLIKFLFDACDKPSGLIGTIEHILGNNRIQDGFTTPESCLLQKYLAEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +T   +E SS GL   RL  ++   G  TN+  DH+D+H + + Y  AK++LF +L
Sbjct: 168 VKSNLTAAVIETSSIGLVLDRLANVEFDVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
                 A++  D   +K+ ++         ++ G +         +          +  +
Sbjct: 228 -SDSGLAVVNNDLPQAKQFLEATRAVP---VTYGIEQLADYRASNLRFSPFGADFDLIHK 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+ F    PL G++ VYN L A  +    +  D   ++  +  +    GR E + +    
Sbjct: 284 GEIFPCHSPLIGQYNVYNVLAAIAVTHQRLNCDLQQLVSLVASVKSPRGRLEPIQSGPCP 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             IY+DYAHT ++L+ + + +RT+  + G++IVVFGCGGDRD+ KR IM ++       A
Sbjct: 344 --IYIDYAHTPDALDNVCQTLRTLLPSGGKLIVVFGCGGDRDRSKRKIMAQVVEKY-GFA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +VT DNPR EDPE I  EI  G     F  + +R +AI  A+ + + +D+++VAGKGHET
Sbjct: 401 VVTSDNPRGEDPETIVNEICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I  +       D +++ E+L
Sbjct: 461 YQIFKHQTI-AFDDREVVHEVL 481


>gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 498

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 147/478 (30%), Positives = 235/478 (49%), Gaps = 17/478 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR +  G +F+A+ G K+DG  FI QAI + A AI+  +    +        N
Sbjct: 22  ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIFKYIKN 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++      + +SL A+R Y +  + +  + +TGT+GK++V   + Q     G  +  +
Sbjct: 82  VILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTKTATM 141

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G       +  Q    TT SPI++   LS +  +    V++E SSHGL QHR+  +    
Sbjct: 142 GTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEVPFYI 201

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+DYH+  + Y +AK  LF     K    I+ ADD Y K  +K+  N    
Sbjct: 202 AIFTNLTQDHLDYHENMEKYESAKWLLFS--THKVKKIILNADDQYGKIWLKKLLNFYTV 259

Query: 267 VLSV------GYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +++       Y  K+I+   +   +N    +T             L G F V N L++ 
Sbjct: 260 AVTIQNRKQKKYSTKWINATNIEQNNNNSIYITFESSWGTGRISSCLIGRFNVTNLLLSL 319

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              + +G   + ++   EK+  V GR E   +  +     +DYAHT ++L+  L  I + 
Sbjct: 320 ACLLELGYSLSDLIHTSEKIIPVQGRMELF-SYVKKPTFIIDYAHTPDALKKTLNAIHSH 378

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
               I  +FGCGG+RDQ KRPIMG IA  ++D  I+T+DNPR+E  +KI  +I++G    
Sbjct: 379 YQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQDILNGCKNK 438

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +   +R +AI  A        ++++AGKGHE   I+ N     S D  I+  +LG
Sbjct: 439 EKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKIVLNLLG 495


>gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
 gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
          Length = 505

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 144/479 (30%), Positives = 236/479 (49%), Gaps = 21/479 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +  +  + SDSR  Q G +F  + G KE    ++P+AI +GA+AI+     +    
Sbjct: 27  VDCADVFVTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTERPLTGL-- 84

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
                   P  +V + RK  +L  S L G+   ++    VTGT+GK++V+  ++ I Q S
Sbjct: 85  ------QVPQCIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSS 138

Query: 141 GLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  +   G      S + +   LTTP    L++ L+ +  +  TH  +E SSH LDQ+RL
Sbjct: 139 GRRTGLSGTVEYHDSISSRPASLTTPDANELSQLLAEMVCRKATHAVMEVSSHALDQNRL 198

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI L  G  TN+ +DH DYHQ    Y   K R+ +++ P E   ++  DD   +     
Sbjct: 199 AGIDLSVGVITNVTQDHFDYHQNFGNYAACKARMIQQVKP-EGTLVLNWDDPTCRSFAAE 257

Query: 260 AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             ++   +L+    G   +  + +       +  I   G        L G   + N L A
Sbjct: 258 VKSSQT-LLTYAIDGQADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCLAA 316

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A  C+++G+  + +   +E+L  VPGR E V T  +   + +DYAHT ++L  ++++ + 
Sbjct: 317 AAACLSLGVSLSEIALGIERLVTVPGRMERV-TCGQSFTVLIDYAHTDDALSHVIRSAKR 375

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           + S R+  VFG GGDRD GKR ++G +A   AD  I+T DNPRSEDP +I   +  G   
Sbjct: 376 LCSQRVFCVFGAGGDRDTGKRSLLG-MAASEADRVIITSDNPRSEDPAQIIRAVAEGCLN 434

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 +  +R EAI  A+    + D++++AGKGHE   I+ + +     D  ++    
Sbjct: 435 KGVSPEQIIDRREAIHYALSEARRGDLVLIAGKGHENNQIIGD-QIIPFSDRLVVENYF 492


>gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 498

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 147/478 (30%), Positives = 235/478 (49%), Gaps = 17/478 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +  DSR +  G +F+A+ G K+DG  FI QAI + A AI+  +    +        N
Sbjct: 22  ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIFKYIKN 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++      + +SL A+R Y +  + +  + +TGT+GK++V   + Q     G  +  +
Sbjct: 82  VILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTKTATM 141

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G       +  Q    TT SPI++   LS +  +    V++E SSHGL QHR+  +    
Sbjct: 142 GTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEVPFYI 201

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+DYH+  + Y +AK  LF     K    I+ ADD Y K  +K+  N    
Sbjct: 202 AIFTNLTQDHLDYHENMEKYESAKWLLFS--THKVKKIILNADDQYGKIWLKKLLNFYTV 259

Query: 267 VLSV------GYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +++       Y  K+I+   +   +N    +T             L G F V N L++ 
Sbjct: 260 AVTIQNRKQKKYSTKWINATNIEQNNNNSIYITFESSWGTGRISSCLIGHFNVTNLLLSL 319

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              + +G   + ++   EK+  V GR E   +  +     +DYAHT ++L+  L  I + 
Sbjct: 320 ACLLELGYSLSDLIHTSEKIIPVQGRMELF-SYVKKPTFIIDYAHTPDALKKTLNAIHSH 378

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
               I  +FGCGG+RDQ KRPIMG IA  ++D  I+T+DNPR+E  +KI  +I++G    
Sbjct: 379 YQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQDILNGCKNK 438

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +   +R +AI  A        ++++AGKGHE   I+ N     S D  I+  +LG
Sbjct: 439 EKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKIVLNLLG 495


>gi|170738610|ref|YP_001767265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
 gi|168192884|gb|ACA14831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
          Length = 488

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 201/487 (41%), Positives = 277/487 (56%), Gaps = 18/487 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +   FPE     S  P       +  +++DSR +  G +FVA+ G + DG LF  QA   
Sbjct: 7   LGALFPEAAGAASALP-------VAALTADSRRVGPGAVFVAVPGTRADGRLFAAQA--- 56

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
              A    +  +     A +      L V + R+ L+L A+RL+   P  ++AVTGTSGK
Sbjct: 57  --AAAGAVAMVAEGPRPADLPQAVAYLSVPDARRALALAAARLHPGQPATVVAVTGTSGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           SSVA FV+QI  R G  S  +G    +    A    LTTP P+ L + L  L+  G+T +
Sbjct: 115 SSVADFVRQILARLGRRSASLGTLGVVTGEGAAYGALTTPDPVTLHETLDRLARDGITDL 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++EASSHG++Q RLDG++L A +FTNLG DH+DYH+T +AY  AK+RLFE+LLP+ + AI
Sbjct: 175 AMEASSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHRTVEAYLAAKLRLFEDLLPEGATAI 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD   +   +         +++ G  G+ + L  V      Q++T++ +G+      P
Sbjct: 235 VNADGPMADRAVAAIRARSLPLVTTGRAGETLRLDAVETRGFAQRLTLAAQGRALTVDLP 294

Query: 306 LPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           L G +QV NALVAA L +A          V+  L  L  VPGR E V T  RG    VDY
Sbjct: 295 LVGSYQVENALVAAALVLATPAGRGRLEAVIGALGHLAGVPGRLERVAT-HRGALCVVDY 353

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L+ +R   +GR++ V GCGGDRD+ KRP+MG+IA+  AD  IVTDDNPRS
Sbjct: 354 AHKPEALAGVLQALRPFATGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVTDDNPRS 413

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E+P  IRAEI+   PG  E G+R EAIR A+  L   DVLVVAGKGHET  I+ +     
Sbjct: 414 EEPAAIRAEILAAAPGAEEIGDRAEAIRAAVRDLAPGDVLVVAGKGHETGQIIGD-RTLP 472

Query: 483 SVDCDII 489
             D D +
Sbjct: 473 FSDRDAV 479


>gi|159028369|emb|CAO87267.1| murE [Microcystis aeruginosa PCC 7806]
          Length = 496

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 164/500 (32%), Positives = 237/500 (47%), Gaps = 16/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+    P       I        +I  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLQELLANITP----VSPISSPIASITEITGISTNSHACQPGDLFIGLPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
             A+  GA     +              +  ++VV +     +  A++ Y        ++
Sbjct: 57  RSALETGAL---AALISPAAAAKFPPPEDACVIVVADLVTATAAIAAKFYHYPALTLKLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++G+ +   G   T    F +    TTP    L  +L+  
Sbjct: 114 GVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKA 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G     +E SSH L Q R+ G       FTNL RDH+DYH   + YF AK +LF   
Sbjct: 174 VSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPD 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   AII  DDAY + +            SV       + K +       +  +    
Sbjct: 234 YLQ-GKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQSTGVEGVMVTPQ 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGG 356
            +  F  PL G++ + N L A    +  G+D   V+  + +   VPGR E V     +  
Sbjct: 293 GEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFSGVPGRMERVSIAPDQDI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R   SGR+I VFGCGGDRD+ KRP+MGKIA +LAD+AIVT
Sbjct: 353 SVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKRPLMGKIAAELADLAIVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E PE+I  +II GIP  I      +R  AI TAI+     D +++AGKGHE   
Sbjct: 413 SDNPRTEAPERILEDIIAGIPPEITVQVISDRALAIDTAIQTAQPGDGVIIAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 473 ILGT-EKIHFDDREQARAAL 491


>gi|254281947|ref|ZP_04956915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
 gi|219678150|gb|EED34499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
          Length = 484

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 161/494 (32%), Positives = 245/494 (49%), Gaps = 23/494 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  K   ELI+     P +     I++++ DSR +  G +FVA+ G + DG  FI  A+ 
Sbjct: 3   LAVKSLAELID----VPAELGSVAISDITLDSRAVAPGAVFVAMPGGESDGRGFIDDALR 58

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123
                    +A  L +     + +  ++ V   R      A R +G       ++AVTGT
Sbjct: 59  -------AGAAAVLAEADGLAQQHPKVIAVPALRSRCGDIARRGFGDVSARMALVAVTGT 111

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+S+A    Q+ +  G+ +  IG   + ++        TTP    L + L+   ++ +
Sbjct: 112 NGKTSIADITAQLLRGLGVKTGTIGTLGSRTNTVAATAVNTTPDVFTLHRTLAAWHAEDI 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            HV +EASSH L Q RL G+ L  G FTNL RDH+DYH+ ++AY  AK+RLF +      
Sbjct: 172 DHVVLEASSHALSQERLAGLTLRTGIFTNLSRDHLDYHEDERAYLAAKLRLFSD--YPLQ 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            AI  ADD  + EV   A    C  L +     +     +   + +   +T+        
Sbjct: 230 YAIYNADDPMASEVRTVA---SCPTLGISMSSAEADVFAQFEVLQSGLNITLHAPYGTAS 286

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G F  +N + A      +G D   V+  L  L  VPGR + V  + +   + VD
Sbjct: 287 AETPLSGTFNAFNVVAAVMAATTLGYDFEQVMALLPTLKTVPGRMQRVA-SPQELAVVVD 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT  +L + ++ +R   +G + +VFGCGGDRD+GKR  MG+IA  LAD  +VT DNPR
Sbjct: 346 YAHTPEALAVAIEALRPGCTGELWLVFGCGGDRDRGKRAQMGRIAATLADRVVVTSDNPR 405

Query: 422 SEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           SE PE+I  +I+ GI G  +   +R  AI  A+      DV+++AGKGHE     + G +
Sbjct: 406 SEAPERIIDDILKGIDGPAVVVEDRRGAIMHALGAARPGDVVLIAGKGHEDYQE-SAGVR 464

Query: 481 KMSVDCDIIREILG 494
           +   D  + +E   
Sbjct: 465 RPFSDSAVAQEFFA 478


>gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 850

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 225/470 (47%), Gaps = 25/470 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            ++ +++DSR ++   +F+A  G   DG  +I  AIA+GA  ++  S    Q F      
Sbjct: 385 PVHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDS----QGFDWKPEW 440

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQ 146
               + + + +  +   AS+ Y    E +  V  TGT+GK++V  ++ Q  +     S  
Sbjct: 441 QVHNIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSAV 500

Query: 147 IGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     +    Q  + TTP P+ L K L+      V  V++E SSHGLDQ R++G+   
Sbjct: 501 IGTLGNGALEDLQATQNTTPGPVELQKMLATFVLDDVRMVAMEVSSHGLDQGRVNGVAFD 560

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+ RDH+DYH T +AY  AK +LF+      S A++ ADD +   +++     G 
Sbjct: 561 VAVLTNITRDHLDYHLTMEAYQAAKRKLFD--WQTLSAAVVNADDPFGLALIEDLRKQGK 618

Query: 266 RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +VLS G      +    V       ++ +       D      G+F VYNAL      + 
Sbjct: 619 KVLSYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCLLV 678

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             +     L+ +  L  V GR +  G       + VDYAHT ++LE  L  +R+   G++
Sbjct: 679 NEVALPAALQAVSGLVPVAGRMQMFG-GGDLPLVVVDYAHTPDALEKALHTLRSQARGKL 737

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKG 443
             VFGCGGDRD GKR  MG+IA +LAD  I+T+DNPRSE+P  I A I  G+      + 
Sbjct: 738 ACVFGCGGDRDSGKRSEMGRIADELADSVIITNDNPRSENPYAIIAAIAEGMAREATVET 797

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R +AI  A+             KGHE    +  G +    D D ++  L
Sbjct: 798 DRAKAIALAVS------------KGHEDYQEI-QGIRYPFSDADWVQNAL 834


>gi|325923948|ref|ZP_08185538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545574|gb|EGD16838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 491

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 157/488 (32%), Positives = 235/488 (48%), Gaps = 18/488 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL        + +++ +  DSR ++AG  FVAI G    G  F+ QA A GA A++  
Sbjct: 3   LSQLLPDVPLLHDVQVSGLVMDSRAVRAGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                +  +         + V   R  L   A + +G+  +   ++ VTGT+GK+S    
Sbjct: 63  PPAPAELPAPADA-----IAVPGLRARLGAMADQFHGQPSQALRMVGVTGTNGKTSTVQL 117

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G+ +  +G     +   A     TTP  +     L+ L  +G   V++E SS
Sbjct: 118 LAQALTLLGMPTGTLGTLGVGLYGSAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+D +      FTNL RDH+DYH     Y  AK +LF         A++  DD 
Sbjct: 178 HALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTR--AGLKAAVVNLDDD 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---IHNKQQVTISVEGKDFDFLFPLPG 308
           + + +   A +   R + V  + +   + +  A    HN     +++ G+      PL G
Sbjct: 236 FGRTLFA-ALDPALRAIGVSSRAQAQAIVRAQALQLDHNGINFALNIHGEVHPVHSPLLG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L  AG   A+ I  A + E L +L  + GR   +G       + VDYAHT ++
Sbjct: 295 RFNVDNLLAVAGALYALDIAPAQIAEVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDA 354

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L ++R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I
Sbjct: 355 LEQALASLRSHAQDRLICVFGCGGERDTGKRPQMAAIAEVNADVAIVTDDNPRGEDGDAI 414

Query: 429 RAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G       I + +R  AI  AI M +  D++++AGKGHE    V  G      D
Sbjct: 415 VADILRGFARPDAAIVQRDRAAAIHQAISMASASDIVLIAGKGHEPYQEVA-GVWHAFND 473

Query: 486 CDIIREIL 493
             +  + L
Sbjct: 474 AIVAAQAL 481


>gi|307824826|ref|ZP_07655049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
 gi|307734184|gb|EFO05038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
          Length = 538

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 151/535 (28%), Positives = 248/535 (46%), Gaps = 62/535 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L+DL+       ++Q         +  +  +  DSR +  G +FVA+ G K+ G   +
Sbjct: 13  LRLKDLLTG-LATFLDQ--------DDIPVAGLVLDSRELVCGDVFVALAGAKQHGLAHV 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPE- 115
            QA+  GA A++   A + +  +   R +     P++ V+N    L   A+R Y    + 
Sbjct: 64  EQAVNNGACAVIFDPAGNGRQLAEAFRCDSSTPVPMIAVENLGLKLGELAARFYCDPSQF 123

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT----PSPIYL 170
             ++ +TGT+GK+S + F+ Q+    G+         T+     D    T    P  + +
Sbjct: 124 MTVIGITGTNGKTSCSQFLSQMLDDCGI-------IGTLGWGEWDKLNKTLNTTPDALAI 176

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            K L+ L       V++E SSHGL+Q R++G+      FTN+ RDH+DYH T  AY  AK
Sbjct: 177 QKILAELLKDKKRTVAMEVSSHGLEQGRVNGVTFKGAVFTNISRDHLDYHGTMDAYVQAK 236

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH------LKKVCA 284
           + L ++  P  + A +  DD YS+ V+     +  ++     +GK          + +  
Sbjct: 237 LALLKQ--PGLAFAAVNLDDGYSERVIAAVPES-VQLWQFSVKGKTADSGECVSAENILH 293

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             +  +  +    +      PL G+F V N L    + +A+ +     ++ L  +  V G
Sbjct: 294 KTDGIEFDVRFRDELQRVQVPLFGDFNVENVLAVLTVMLAMEVSLQEAVKKLAGIKPVNG 353

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E  G  +    I+VDYAHT ++L+ +L ++R      + VVFGCGG+RD GKRP MGK
Sbjct: 354 RMERFGAETD-PMIFVDYAHTPDALDKVLSSLRKHCKQALWVVFGCGGNRDTGKRPQMGK 412

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNR 445
           IA   AD  ++TDDNPR E+   I  +I+ G                           NR
Sbjct: 413 IAEQWADHVVITDDNPRYENGLDIVNDILAGCSSTAKDGGSVATDMEPVRPAKVEVIQNR 472

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII------REILG 494
            +AI+  +    K D +V+AGKGHE     +NG      D  ++      R++LG
Sbjct: 473 EQAIQKVVASAAKNDCIVIAGKGHEQYQE-SNGVCVPFSDRQVVIDALDRRKVLG 526


>gi|238923850|ref|YP_002937366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
 gi|238875525|gb|ACR75232.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
          Length = 495

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 149/506 (29%), Positives = 239/506 (47%), Gaps = 37/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +   +++   +       + +I+ +  DSR ++   +FV I G   D H FI
Sbjct: 6   MKLEKLLERMDYKVLAGST-------DIEISTLVYDSRKVEKASVFVCISGAVSDAHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  + +GA A+VV           T       + VDNTR  L+  ++  +    E I  +
Sbjct: 59  PDVVKKGAAAVVVEKDV-------TPIEGVTYIKVDNTRLALACMSAAYFDYPAEKIKTI 111

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        V+ I + +G+ +  IG   +I       +  TTP    + +    +
Sbjct: 112 GITGTKGKTTTTYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFE 235
             +G+  V +E SS  L  HR+ G     G FTNL  DHI  H  +    Y + K  LF 
Sbjct: 172 VDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADYMHCKSLLFR 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVT 292
           +        I   DD + + VMK      C+V + GY+     + +   +   H    V 
Sbjct: 232 QC----RLGIFNGDDEHLEGVMK---GHTCQVETYGYKSTNNLIAENVELKKEHGALGVK 284

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V G  DFD    +PG+F VYN+L A  +C    +D   + E L  +  V GR E V  
Sbjct: 285 YHVSGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVS-VKGRIEIVPV 343

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             R   + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +R  MG+++  LAD
Sbjct: 344 TKR-YTLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSRRYEMGEVSSRLAD 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + +VT DNPR E+P  I  +I+ G+      ++   +R EAIR  +E     D++V+AGK
Sbjct: 403 LTVVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGK 462

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    + ++I +I+
Sbjct: 463 GHEDYQEIK-GVKHHMDERELIADII 487


>gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
 gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
          Length = 493

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 144/501 (28%), Positives = 236/501 (47%), Gaps = 28/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++D++ +     +N L +      E + N +SS+S+ IQ   +F+   G   D H  +
Sbjct: 1   MKIKDILRE-----LNSLILKVNCDEELEFNYISSNSKDIQENTLFICRKGTSFDSHNIV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                +GA   VV                 P + V ++R   S+ AS  Y K  E ++  
Sbjct: 56  DDLYKEGANVFVVEREIR----------KYPYIQVVDSRIAESIIASMFYSKPYEKLITF 105

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
             TGT+GK++       I    G+     G     I      +  TTPS I + + +   
Sbjct: 106 GVTGTNGKTTSVHLFHHIMHNFGIKGSISGTVVNDIMGDKFYHPNTTPSAIEIMRNMHKT 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH L Q+R++ I+      TN+ RDH+D+H+T + Y  AK  +   L
Sbjct: 166 LENGGKYYGMEVSSHALSQYRVESIRYDIVGITNITRDHLDFHETFENYKKAKFHIL-NL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
           L     A++       +EV  +  N   +++S G        + ++    +     +   
Sbjct: 225 LKPNGIAVVN--HELLQEV--KNKNKNIKLVSFGVDSSSDYVIHEITTNWSGTFFKLDTP 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
             +      L GE+  +N  +       IG D   V+  +     V GRFE +    + G
Sbjct: 281 YGEKKVASQLIGEYNAFNITLVVAALAEIGYDIDEVIASVATFRGVDGRFEIIPEAKKLG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I VD+AHT ++LE ++ ++R +T GR+I VFG GG  D GKRP+MG++    +DI+I+
Sbjct: 341 IEIVVDFAHTPDALEKVILSLRKLTKGRLITVFGAGGQSDIGKRPMMGEVVSKYSDISII 400

Query: 416 TDDNPRSEDPEKIRAEIIHG-IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T D+PR EDP KI  ++  G +PG   +   +R EAI TAI + N+ DV+++AG+GHE  
Sbjct: 401 TTDDPRGEDPLKIIKDVEAGLVPGSLSLSIEDRKEAIDTAITLANRGDVILIAGRGHEPY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            +     K    D D+  +I+
Sbjct: 461 QVFDENHKVPFKDRDVAIDII 481


>gi|291524550|emb|CBK90137.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale DSM
           17629]
          Length = 490

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 147/506 (29%), Positives = 239/506 (47%), Gaps = 37/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +   +++   +       + +I+ +  DSR ++   +FV I G   D H FI
Sbjct: 1   MKLEKLLERMDYKVLAGST-------DIEISTLVYDSRKVEKASVFVCISGAVSDAHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  + +GA A+VV           T       + VD+TR  L+  ++  +    E I  +
Sbjct: 54  PDVVKKGAAAVVVEKDV-------TPIEGVTYIKVDDTRLALACMSAAYFDYPAEKIKTI 106

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        V+ I + +G+ +  IG   +I       +  TTP    + +    +
Sbjct: 107 GITGTKGKTTTTYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFE 235
             +G+  V +E SS  L  HR+ G     G FTNL  DHI  H  +    Y + K  LF 
Sbjct: 167 VDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADYMHCKSLLFR 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVT 292
           +        I   DD + + VMK      C+V + GY+     + +   +   H    + 
Sbjct: 227 QC----RLGIFNGDDEHLEGVMK---GHTCQVETYGYKSTNNLVAENVELKKEHGALGIK 279

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V G  DFD    +PG+F VYN+L A  +C    +D   + E L  +  V GR E V  
Sbjct: 280 YHVSGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVS-VKGRIEIVPV 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             R   + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +R  MG+++  LAD
Sbjct: 339 TKR-YTLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSRRYEMGEVSSRLAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + +VT DNPR E+P  I  +I+ G+      ++   +R EAIR  +E     D++V+AGK
Sbjct: 398 LTVVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    + ++I +I+
Sbjct: 458 GHEDYQEIK-GVKHHMDERELIADII 482


>gi|291527976|emb|CBK93562.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale
           M104/1]
          Length = 490

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 147/506 (29%), Positives = 239/506 (47%), Gaps = 37/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +   +++   +       + +I+ +  DSR ++   +FV I G   D H FI
Sbjct: 1   MKLEKLLERMDYKVLAGST-------DIEISTLVYDSRKVEKASVFVCISGAVSDAHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  + +GA A+VV           T       + VD+TR  L+  ++  +    E I  +
Sbjct: 54  PDVVKKGAAAVVVEKDV-------TPIEGVTYIKVDDTRLALACMSAAYFDYPAEKIKTI 106

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        V+ I + +G+ +  IG   +I       +  TTP    + +    +
Sbjct: 107 GITGTKGKTTTTYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFE 235
             +G+  V +E SS  L  HR+ G     G FTNL  DHI  H  +    Y + K  LF 
Sbjct: 167 VDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADYMHCKSLLFR 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVT 292
           +        I   DD + + +MK      C+V + GY+     + +   +   H    V 
Sbjct: 227 QC----RLGIFNGDDEHLEGIMK---GHTCQVETYGYKSTNNLVAENVELKKEHGALGVK 279

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V G  DFD    +PG+F VYN+L A  +C    +D   + E L  +  V GR E V  
Sbjct: 280 YHVSGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVS-VKGRIEIVPV 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             R   + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +R  MG+++  LAD
Sbjct: 339 TKR-YTLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSRRYEMGEVSSRLAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + +VT DNPR E+P  I  +I+ G+      ++   +R EAIR  +E     D++V+AGK
Sbjct: 398 LTVVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    + ++I +I+
Sbjct: 458 GHEDYQEIK-GVKHHMDERELIADII 482


>gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 498

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 140/505 (27%), Positives = 249/505 (49%), Gaps = 29/505 (5%)

Query: 1   MKLQDLIYKDFPELINQ--LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+L  +I     EL+    L +      + + + + SDSR ++   +F+ I G   D HL
Sbjct: 1   MRLSQVI-----ELLGNSVLQVVNPGNVDPEFDHIESDSRGLKERNLFICIKGTNFDSHL 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
              +   +GA A+V       ++         PI+ V ++R   +L     Y      + 
Sbjct: 56  IARELQRKGAVALVAEMPIEDEEVV------VPIVYVKSSRLVEALLTMEEYCHPYRKLT 109

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
            + VTGT+GK+++ + +  +       +  IG    +   +   + + TTP P+ LAK L
Sbjct: 110 TIGVTGTNGKTTITTLIYHVLSSFERKASLIGTVRNVVGENIYTNPKNTTPGPVELAKLL 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +     +  +E SSH L  +R++G++   G  +N+ RDH+D+H T   Y+ +KM+LF
Sbjct: 170 QLSTKLKSEYFIMEVSSHSLSMNRVEGMRFDVGIISNVTRDHLDFHPTFDDYYRSKMKLF 229

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
             LL     A++  D    K  +   H +  R+ + G+       ++ +         TI
Sbjct: 230 S-LLKTNGIAVVNGD----KINIADIHISRNRITTYGFGDESDYRIENLDISRTGMDFTI 284

Query: 294 SVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               G        L GE   YN   A     ++  D   + + +     VPGRFEFV   
Sbjct: 285 QTPYGSSHRIYSRLIGEHNAYNIAAAVAALNSLNYDLDHIAKAISSFGGVPGRFEFVEEA 344

Query: 353 SR-GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           ++ G  + VD+AHT ++LE +LK  R +T GR+I+VFG GG  D+GKRP+M +++   +D
Sbjct: 345 TKYGFDVVVDFAHTPDALEKLLKTARRLTPGRLILVFGAGGSADKGKRPLMSEVSSKYSD 404

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + I+T D+P+ +DP +I  ++  G+     ++   +R EAI  A+ + N+QD++++AG+G
Sbjct: 405 VVILTSDDPKLDDPAEILQDLESGVDKFKPYLVIPDRREAISVALTLANRQDMVLIAGRG 464

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   I+   ++    D  ++++IL
Sbjct: 465 HEDFQILGE-KRIPFNDKQVVKDIL 488


>gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
 gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
          Length = 506

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 149/496 (30%), Positives = 235/496 (47%), Gaps = 24/496 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL       R   +  ++ DSR ++ G ++ A+ G +  G  F+ QA + GA A
Sbjct: 17  LAELADQLGA-AQPDRTADVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAASLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++     + +       +  P+L V++ R  +   A+ LYG+   ++L   +TGTSGK++
Sbjct: 76  VLTDPGGAER----AAATGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +  ++  IG   T I      +  TTP    L    + +  +GV  V++
Sbjct: 132 TAYLVEGGLKTA-KATGLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAM 190

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       FTNL  +H+++H   + YF AK +LF     +     + 
Sbjct: 191 EVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPARSRLGI--VN 248

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPL 306
           ADD Y + + + A        + G+       + V         T++  EG       PL
Sbjct: 249 ADDEYGRRLAEEATVPVVTYSAEGHPDADWRAEDVQVGPMDSTFTVTGPEGVRVSARSPL 308

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A     A G+D+    + +  +  VPGR E V    +     VDYAH +
Sbjct: 309 PGPFNVANTLAAIVALAAAGLDAQTAADGIAAVPGVPGRLERVDA-GQPYLAVVDYAHKT 367

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+ +R +T GR+ VV GCGGDRD+ KR  MG     LAD A++T DNPRSEDP 
Sbjct: 368 DAVESVLRALRKVTKGRVHVVLGCGGDRDRTKREPMGAAVARLADTAVLTSDNPRSEDPL 427

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRT---------AIEMLNKQDVLVVAGKGHETVHIVTN 477
            I A ++ G    +    R E +           A+      D ++VAGKGHE    +  
Sbjct: 428 AILAAMLQGAAS-VPAHERGEVLLFEERAAAIAAAVARARPGDTVLVAGKGHEQGQDIA- 485

Query: 478 GEKKMSVDCDIIREIL 493
           G  +   D  ++RE +
Sbjct: 486 GVVRPFDDRQVLREAI 501


>gi|238916651|ref|YP_002930168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
 gi|238872011|gb|ACR71721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
          Length = 497

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 151/507 (29%), Positives = 248/507 (48%), Gaps = 30/507 (5%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +++      E  +          +  +  ++SDSR +Q G+ FV I G   DGH +
Sbjct: 1   MKLSEILKICSENETADFRYSVVCGDTDVDVTGITSDSRKMQDGYAFVCIKGAVSDGHKY 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I Q   + +  +V+   Y  +D  A       ++  DNTR  L+L ++ +YG     +  
Sbjct: 61  IDQIKDKASVIVVLDGEYEAKDCKAA------VVSTDNTRLALALMSAAVYGNPDRKLFT 114

Query: 120 VTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           +  T  K        V+ + +  G+ +  IG   TI    A     TTP  I + ++ + 
Sbjct: 115 IGITGTKGKTTTTYMVKNVLEACGIKTGLIGTIETIIGDEAIPAHNTTPESIEIHQSFAK 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +   G   V +E SS GL   R  GI    G FTNL  DHI    H++ + Y N K +LF
Sbjct: 175 MVDAGCKAVVMEVSSQGLKLDRTAGIMFDIGVFTNLEPDHIGPNEHESFEDYLNCKAKLF 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
           ++        I+ ADD +++++++    A C+V S G      I  + +  +H   ++ +
Sbjct: 235 KQC----KVGIVNADDKHTQDILR---GAICKVESYGIGDNADIKAENIELLHEPGKIGL 287

Query: 294 SVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +     +      LPG+F VYN+L A  +     +D   + E L+ +  V GR E V 
Sbjct: 288 TYDCTGLVNMKVELNLPGKFSVYNSLCAIAITRHFDVDEEALKETLKHVK-VKGRIELVK 346

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             S    + +DYAH + +LE IL  ++     R++ +FGCGG+R + +R  MG+++  LA
Sbjct: 347 V-SDDFTLMIDYAHNAMALESILTTLKEYHPHRLVCLFGCGGNRSKERRYEMGEVSGKLA 405

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ I+T DNPR E+PE I  +I  GI       ++  +R EAI+ AIE     D++V+AG
Sbjct: 406 DLTIITSDNPRFEEPEAIIEDIKTGIAKTTGKHVDITDRKEAIKYAIEHGEPGDIIVLAG 465

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE    +  G K    +  +I+E+L
Sbjct: 466 KGHEDYQEIK-GVKYPMDERVLIKEVL 491


>gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
 gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
          Length = 511

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 148/486 (30%), Positives = 234/486 (48%), Gaps = 36/486 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V  DSR    G +FVA+VG+  DGH            A   ++  +       + +
Sbjct: 23  ELTGVCCDSRQAGPGMVFVAVVGHSADGHA---------YVAAAAAAGATAAVVQRPVEA 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   +VV ++R  LS  A    G+  +   ++ VTGT+GK+++    + I  +    +  
Sbjct: 74  DIAQIVVPDSRLALSALADEFAGRPSQRLKLVGVTGTNGKTTICHLARAIMAQR-WPTGM 132

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T  +   +   +TTP  + L K L+ + + GV   ++E SSH LDQHR D  +  
Sbjct: 133 IGTVETCFAQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVSSHALDQHRADHCRFD 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES------PAIIYADDAYSKEVMKR 259
            G FTNL RDH+DYH     YF AK  LF ELLP  +       ++I  DD + + +  +
Sbjct: 193 VGLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRPVSVICLDDDHGRVLADQ 252

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A   G  +L+ G   G  +  + +    +   V I   G   +F   L G + + N + A
Sbjct: 253 ARGTGLALLTYGLAPGADVGGRVLAGGVDGMTVRIDHPGGSLEFHSRLVGRYNLQNIVGA 312

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A + +A+G+    +   LE +  VPGR + V    R   ++VDYAH+  ++   L  +R 
Sbjct: 313 AAVGLALGLSPEEIKAGLEGVAGVPGRLQRVPGPDRSPAVFVDYAHSPEAIAAALAVLRP 372

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-IP 437
           + +GR+I VFG GGDRD+GKRP+MG+ A   AD  ++T DNPR+EDP  I   +  G + 
Sbjct: 373 LCAGRLICVFGAGGDRDKGKRPLMGRAAGQAADFCVLTSDNPRTEDPMAIIDMVEAGLVE 432

Query: 438 GFIEKGNRIEA--IRTAIE------------MLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
               + +   A     A+E                 DV+++AGKGHE   I+    K+  
Sbjct: 433 SEARRCDNPAAGQRAYAVEADRAAAIAMAIQAAGPADVVLIAGKGHEDYQIIGR-VKRHF 491

Query: 484 VDCDII 489
            D +  
Sbjct: 492 DDREQA 497


>gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
 gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
          Length = 487

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 156/475 (32%), Positives = 240/475 (50%), Gaps = 16/475 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            +    V++DSR +  G +F+A  G   DG  +I QA+A GA A++  S    QDF    
Sbjct: 8   NQTFTAVTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDS----QDFVWNA 63

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                 L V   +  ++  A+  Y      +  + VTGT+GK+SV+ ++ Q  Q  G  +
Sbjct: 64  AIKVSNLGVRELKSQVAQIAAEFYQYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKT 123

Query: 145 FQIGPTSTI-----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG   +       +   +   TTP  I L K L+  ++QG   V +E SSHGLDQ R+
Sbjct: 124 AVIGTIGSGFADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGRV 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + I+     FTNL RDH+DYH T  AY +AK +LF+   P    AI+ ADD + K++ + 
Sbjct: 184 NAIEFDFAVFTNLTRDHLDYHVTMDAYASAKQKLFD--WPSLRTAIVNADDDFGKKMAES 241

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  +L+ G     +   ++    +   + +S           + G F  YN L   
Sbjct: 242 LRVNNKSLLTYGLLHGDVRADQLTLGPSGISMQVSTPQGAAVLNASVLGRFNAYNLLAVL 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +A  +     +  + ++  V GR +  G N +   + VDYAHT ++LE +L ++R  
Sbjct: 302 ATLLARQVPLNEAIAAIAQIKPVAGRMQQFGGNDK-PLVVVDYAHTPDALENVLVSLREQ 360

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
           T G+++ VFGCGGDRD GKRP+MG IA   A   +VT DNPRSE+P +I   +++G+   
Sbjct: 361 TQGKLVCVFGCGGDRDAGKRPLMGAIAEKYAHHVVVTSDNPRSENPAEIIEHVVNGMTVL 420

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                +R  AI+ AI+  NK DV+++AGKGHE    V  G +    D  + +  L
Sbjct: 421 PSVAPDRAIAIQQAIKFANKDDVVLLAGKGHEDYQEV-GGVRAPFSDIAVAQAAL 474


>gi|300702957|ref|YP_003744559.1| UDP-N-acetylmuramoylalanyl-d-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070620|emb|CBJ41915.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 514

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 166/486 (34%), Positives = 234/486 (48%), Gaps = 32/486 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA V GN   + DG   IPQAI  GA A++  +   +    A +R
Sbjct: 32  DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               +L VD   +     A++ Y         ++ VTGT+GK+S + ++ Q   R G   
Sbjct: 92  ----VLPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T           TTP  I L ++L  L   G   V++E SSHGL+Q R DG +
Sbjct: 148 AVVGTLGTGFVDTLVATGFTTPDAIQLQRSLVDLHRAGARAVAMEVSSHGLEQGRADGTR 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+DYH T   Y  AK RLF    P    A+I  DDA    ++     A
Sbjct: 208 FDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLL-TGLRA 264

Query: 264 GCRVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG--EFQVYN 314
               +  G  G+          L+      ++   T  ++G         P    F V N
Sbjct: 265 DIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDIDGSFGRATVHSPMVGLFNVSN 324

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L   G+ +  G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L 
Sbjct: 325 QLGVLGVLLMAGVSWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLC 383

Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP++I   
Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDM 443

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G+      ++  +R  AI  A+   +  DV+VVAGKGHE+    T G K+   D + 
Sbjct: 444 IADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQE-TAGRKRPFSDQEH 502

Query: 489 IREILG 494
           +R  L 
Sbjct: 503 VRLALA 508


>gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sp. M21]
 gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21]
          Length = 505

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 254/524 (48%), Gaps = 50/524 (9%)

Query: 1   MKLQDLIY-KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+   + PE+     I        +I  +  DSR +  G +F A+ G K DG  F
Sbjct: 1   MKLAQLLNCLEAPEVAGDAGI--------EIESLCYDSRKVAPGALFFALRGVKSDGTEF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           +  A+  GA AIV     +             ++VV + R  +SL A+  YG       +
Sbjct: 53  VEAAVKGGAVAIVADRPCAC--------PGVTVVVVPDPRLAMSLMAAAFYGTPTRGIPV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    V+ I +++G+ S  +G  S   ++       TTP  + L + L  
Sbjct: 105 VGITGTNGKTTTTYLVEGIMEQAGVPSAVLGTISYRFAATEIPAPNTTPESVDLQRILRE 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L   G     +E SSH L+Q R+DG       FTNL RDH+DYH   ++YF +K+RLF +
Sbjct: 165 LVDLGARGAVMEVSSHSLEQRRVDGCLFDVALFTNLTRDHLDYHLDMESYFKSKLRLFTD 224

Query: 237 LLPKES-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQ 290
           LL   +      A++  DD +   + ++A      VL+    GK  I + +     +  +
Sbjct: 225 LLAPTAEKPLRRAVVNLDDPFGPRIAEKASAP---VLTYSMTGKADISVAEAEFTVDGIR 281

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +   +  L G F +YN L A G  +A+G     +   +E    VPGR E V 
Sbjct: 282 CRLDTPVGEISLVSELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVE 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +   G  + VDYAHT ++LE +L  +  + + RII +FGCGGDRD+GKRP+MG+IA   +
Sbjct: 342 SEE-GITVLVDYAHTGDALENVLSTVSELKTDRIITIFGCGGDRDKGKRPVMGEIAARYS 400

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRT 451
           D+A++T DNPR+E+P  I  ++  GI                    GF    +R  AIR 
Sbjct: 401 DLAVITSDNPRTEEPSAILDDVRAGILPLGLREYGLEELAAGFHEKGFATIESRRAAIRA 460

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           A+      D++++AGKGHE   IV   EK    D +     L L
Sbjct: 461 ALLAARPGDIVILAGKGHEDYQIVGT-EKFHFDDREEAAAALKL 503


>gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
 gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
          Length = 496

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 157/490 (32%), Positives = 236/490 (48%), Gaps = 22/490 (4%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            +F    R+  I E++ DSR ++ G +F+A+ G K DG   I  A+         + AY 
Sbjct: 8   KLFAHASRDPLIRELTLDSRSVRPGDLFLAVPGAKVDGREHIADAL----ARGAAAVAYE 63

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            Q  +    ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q 
Sbjct: 64  EQGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQA 123

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G     IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH L+
Sbjct: 124 LDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSHALE 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DD + + 
Sbjct: 184 QGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDDFGRR 241

Query: 256 VMKRAHNAG------CRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +               R+LS   +     +  ++     +  + T+     +      L 
Sbjct: 242 LAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATLVTAQGERILRSQLL 301

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A    +A+      +L+   +L    GR + +G       + VDYAHT +
Sbjct: 302 GRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLG-GGDKPLVVVDYAHTPD 360

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+EDP +
Sbjct: 361 ALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPSR 420

Query: 428 IRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I  G   P  +E    R EAI   I      DV+V+AGKGHE    + NGE+    
Sbjct: 421 IFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI-NGERHDFS 479

Query: 485 DCDIIREILG 494
           D     + L 
Sbjct: 480 DLTEAEKALA 489


>gi|166710648|ref|ZP_02241855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 495

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 152/475 (32%), Positives = 224/475 (47%), Gaps = 16/475 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR +  G  FVAI G    G  F+ QA A GA A++             +
Sbjct: 19  DVQVSGLVMDSRTVALGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPA-----PDGL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G  +
Sbjct: 74  PVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF         A++  DD + + +       
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTR--AGLKAAVVNLDDGFGRTLFASLDPV 251

Query: 264 --GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V S  +    +  + +   HN     +++ G+      PL G F V N L  AG 
Sbjct: 252 LRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGEVHPVHSPLLGRFNVDNLLAVAGA 311

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+   
Sbjct: 312 LWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQ 371

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---G 438
            R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G      
Sbjct: 372 DRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARPDA 431

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            I + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 432 AIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|325123730|gb|ADY83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 499

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 148/487 (30%), Positives = 229/487 (47%), Gaps = 34/487 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +W ++     S DSR + +G IF+A+       K     F   A+A GA A++  +   +
Sbjct: 16  KWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAVISETELGV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQQ 135
            +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  V +
Sbjct: 74  AN----------EWVCSDVRQRMGEWQERYLQRIDLVVPVRIIAVTGTNGKTTISRLVAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          +G T   I      +  TT   + L  AL   + QG T  S+EASSHGL
Sbjct: 124 LISFQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF         AII  DD ++ 
Sbjct: 184 EQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FSSLKVAIINLDDEHAA 241

Query: 255 EVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++  A     +      S+       ++  +          +      F    PL G F
Sbjct: 242 LMINAAKQNPAQPKILTYSLTQNTADYYITDLSYSLVGATFNLVSPQGSFAVQSPLLGHF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N + A       G D   ++  + +L   PGR + +    R     VDYAHT ++L 
Sbjct: 302 NVENLVAALIATEQAGFDLKALVAFVPELIGAPGRMQVIRDGER--LFVVDYAHTPDALI 359

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDV 478

Query: 487 DIIREIL 493
             +R  +
Sbjct: 479 VEVRSAI 485


>gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
 gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase; AltName: Full=D-lysine-adding enzyme; AltName:
           Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
          Length = 490

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 149/495 (30%), Positives = 243/495 (49%), Gaps = 28/495 (5%)

Query: 10  DFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +   +++ L    ++ R   + +I  VS+ S  ++ G +F+   G K D H  IP+ + +
Sbjct: 2   NISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VV     L         + P + V ++R F +  AS  +    +++L    T   
Sbjct: 62  GAVAVVVEREIDL---------DFPYIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTN 112

Query: 127 SSVAS--FVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
               +   +  +    G     +      I   +  + +TTP  I +  A+      G  
Sbjct: 113 GKTTTTMMIYHMLTSLGERGSVLTTAVKRILGNSYYDDITTPDAITILSAMKENREGGGK 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ LL  +  
Sbjct: 173 FFALEVSSHALVQQRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGV 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           A++        E +  A N   R ++ G  +     L  +       Q  +         
Sbjct: 232 AVLN-------ESLADAFNRKSRKITFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD 361
                G+F  YNA  A      +G D   +   LE    V GRFE V G    G  + VD
Sbjct: 285 FTRAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD 344

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LAD+ I+T D+PR
Sbjct: 345 FAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPR 404

Query: 422 SEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            EDPE+I  ++I GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   I+   
Sbjct: 405 GEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEE 464

Query: 479 EKKMSVDCDIIREIL 493
           +K    D +++ EI+
Sbjct: 465 KKVPFQDREVVEEII 479


>gi|307294501|ref|ZP_07574343.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
 gi|306878975|gb|EFN10193.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
          Length = 480

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 191/495 (38%), Positives = 267/495 (53%), Gaps = 16/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  LI +   +L            +  ++  + D+R +  G +F A  G + +G  FI
Sbjct: 1   MRLGSLIEEQDAKL------GAGASLDVPVSGFAIDNRKVAPGTVFGAFQGARMNGEDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+         + A ++             +  DN R+  +  A+R +   PE  +AV
Sbjct: 55  PAAV--------QAGAVAVVARPEARVEGAIHIAHDNPRRLFAQLAARYFAPFPEMTVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ +  G  S  IG    T S       LTTP  +     +S L  
Sbjct: 107 TGTNGKTSTVELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLSNMSGLKR 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH    +YF AKMRLF+ ++ 
Sbjct: 167 EGITHAAFEASSHGLAQYRTEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDGVVA 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+++ADD +S +V++RA   G RVLSVG QG+ + L         Q + + VEGK 
Sbjct: 227 PDGAAVVWADDEWSDKVIRRATKRGLRVLSVGVQGQALRLANRTPTQLGQTLEVEVEGKP 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G +Q  NAL AA L IA G D   VLE L ++  V GR E       G  +Y
Sbjct: 287 YKVSLPLIGAYQAANALTAAALVIAGGEDVGKVLELLGRVQPVRGRLERAVITRAGAPVY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L   ++ +R  T GR+I +FG GGDRD GKRP MGK+A DLAD  IVTDDN
Sbjct: 347 VDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGDRDAGKRPQMGKVAADLADHVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRA ++ G PG  E G R  AI  AI      D++++AGKGHE   I+ +  
Sbjct: 407 PRSEEPSSIRAAVMAGAPGAEEIGGRRAAIAAAIAQAGADDIVLLAGKGHEQGQIIGD-R 465

Query: 480 KKMSVDCDIIREILG 494
                D  + RE  G
Sbjct: 466 VLPFDDVTVARECAG 480


>gi|88858797|ref|ZP_01133438.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
 gi|88819023|gb|EAR28837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
          Length = 489

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 150/490 (30%), Positives = 239/490 (48%), Gaps = 19/490 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L   L+ F +      +  +  DSR I+ G  F+AI G+ +DG LF+  A+A GA  
Sbjct: 2   MADLAPILARFAISHESIDVQHLVLDSRKIKTGDAFIAIKGHSQDGGLFVESALANGAAI 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
            +V         S  I      + V    K L+  +++ YGK  E +  + VTGT+GKS+
Sbjct: 62  ALVDEQCECTFASDKI------IRVAQLDKKLAQLSAQFYGKPSEELALIGVTGTNGKST 115

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + S +  + Q  G  S  IG          +    TTPS + L   L  L       V++
Sbjct: 116 ITSMIAYLAQVCGSKSAVIGTLGWGHPDKLNALANTTPSSVELQAILGQLHQASHQVVAM 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL Q R+   +  A  F+NL RDH+DYH   Q+Y +AK+ LF E  P+ S   I 
Sbjct: 176 EVSSHGLVQGRVACTRFKAAVFSNLSRDHLDYHGDMQSYADAKLMLFTECNPEISV--IN 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            DD  +K  + +       V   G    + G+++    V    +           + +  
Sbjct: 234 QDDEVAKLWLMQPELMDAVVYGQGKTTTHTGRYVLFDDVQYSGDGLSAQFYTSWGNTEIK 293

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G+F +YN   A    +A+G    L+ + + KL  V GR +     ++   +  DYA
Sbjct: 294 CPLYGQFNLYNLAAAFATLLALGYSIDLLAQAVSKLSPVAGRMQPFSEANKPTCVV-DYA 352

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L + L+ ++    G++  VFGCGG+RD+GKR +M + A   A+  IVT DNPR+E
Sbjct: 353 HTPDALALALQALQLHVPGKVTCVFGCGGNRDKGKRALMAQAAERFANKIIVTSDNPRNE 412

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP+ I A+I+ G       + + +R +AI+ AIE    ++V+++AGKGHE   ++     
Sbjct: 413 DPKAIIADILAGFNDTTHVLSEEDREQAIKMAIEQAEPEEVILIAGKGHEDYQLIGTQVL 472

Query: 481 KMSVDCDIIR 490
                  +++
Sbjct: 473 PFCDRAQVVK 482


>gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
 gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
          Length = 496

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 158/490 (32%), Positives = 237/490 (48%), Gaps = 22/490 (4%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+         + AY 
Sbjct: 8   KLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADAL----ARGAAAVAYE 63

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            Q  S    ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q 
Sbjct: 64  EQGASVLPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQA 123

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G     IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH L+
Sbjct: 124 LDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALE 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DD + + 
Sbjct: 184 QGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDDFGRR 241

Query: 256 VMKRAHNAG------CRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +               R+LS   +     +  ++     +  + T+     +      L 
Sbjct: 242 LAADFARRPSVDHIETRLLSYSLENPEASLFCREAVFSDDGVRATLVTAQGERILRSQLL 301

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A    +A+      +L+   +L    GR + +G       + VDYAHT +
Sbjct: 302 GRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLG-GGDKPLVVVDYAHTPD 360

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+EDP +
Sbjct: 361 ALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPSR 420

Query: 428 IRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I  G   P  +E    R EAI   I      DV+V+AGKGHE    + NGE+    
Sbjct: 421 IFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI-NGERHDFS 479

Query: 485 DCDIIREILG 494
           D     + L 
Sbjct: 480 DLTEAEKALA 489


>gi|87199150|ref|YP_496407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134831|gb|ABD25573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 482

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 181/497 (36%), Positives = 266/497 (53%), Gaps = 22/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++           + +P+   +  +   + D R +  G +F A  G + +G  FI
Sbjct: 1   MKLGAIL---------DAAGYPVAAADANVTGFAIDHRKVAPGTVFGAFPGTRFNGEDFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                      V + A ++      +      +     R+  +  A++ +   PE ++AV
Sbjct: 52  --------ADAVKAGAVAVVARPEAVVEGAVHVADAEPRRAFAALAAQFFQPVPETVVAV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +QI + +G S+  IG    T +  +    LTTP  +     ++ L+ 
Sbjct: 104 TGTNGKTSTVEMTRQIWRMAGRSAASIGTLGVTTADESVSTGLTTPDIVTFLSNMTGLAR 163

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV+ EASSHGL Q R +G+++IAG+FTNL RDH+DYH T + YF AKMRLF+ ++ 
Sbjct: 164 EGVTHVAYEASSHGLSQFRNEGLRVIAGAFTNLSRDHLDYHPTMEDYFAAKMRLFDHVVD 223

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+++ DD +S   ++     G R+LSVG QG+ I L         Q + ++ +G  
Sbjct: 224 DGGVAVVWMDDEWSGRAVEHVRRRGLRLLSVGEQGETIRLLARTPTQLGQVLEVAFDGAR 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G +Q  NALV+AGL IA GID+  V + L +L  V GR E    N  G  +Y
Sbjct: 284 RKISLPLIGAYQAANALVSAGLAIASGIDAGQVFDALARLQPVRGRLERAAINRAGAPVY 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT +++E  +  +R    GR+I VFG GGDRD+GKRP MG+ A   +D+ IVTDDN
Sbjct: 344 VDYAHTPDAIEAAIAALRPHVKGRLITVFGAGGDRDEGKRPEMGRAACAGSDLVIVTDDN 403

Query: 420 PRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           PR EDP  IRA I+ G      E G+R  AI  AI    + D+++VAGKGHE   I+  G
Sbjct: 404 PRGEDPAAIRAAIMAGCADNAREIGDRRSAIAAAIAEAGRDDIVLVAGKGHEQGQIIGRG 463

Query: 479 E---KKMSVDCDIIREI 492
           +        D  + RE 
Sbjct: 464 DAMRVLPFDDVQVAREC 480


>gi|218532977|ref|YP_002423793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
 gi|218525280|gb|ACK85865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
          Length = 492

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 221/498 (44%), Positives = 293/498 (58%), Gaps = 26/498 (5%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +   FPE+   ++  P       +  +++DSR +  G +FVA+ G   DG LF       
Sbjct: 11  LGALFPEVDAAIAGRP-------VAGLTADSRKVVPGGVFVAVPGTAADGRLF------- 56

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPI----LVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              A   ++         T   + P     + V + R+ L+L A+RL G+ PE ++AVTG
Sbjct: 57  --AAAAAAAGAVAVAGEGTRPEDLPEATAWIEVADARRALALAAARLSGRQPETVVAVTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQG 181
           TSGKSSVA FV+QI  R G  S  +G    +++   Q   LTTP P+ L + L+ L+ +G
Sbjct: 115 TSGKSSVADFVRQILSRLGRDSASLGTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEG 174

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +T +++EASSHG++Q RLDG++L A +FTNLGRDH+DYH T + Y +AK+RLF  LLPK 
Sbjct: 175 ITDLAMEASSHGIEQRRLDGVELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKG 234

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            PAI+ AD AY++ V+  A  AG  + + G  G FI L +       Q +T+S  GKD+ 
Sbjct: 235 CPAIVNADGAYAERVIGVADAAGHAIRTTGRGGDFIRLVEAGTEGFAQSLTLSHAGKDYR 294

Query: 302 FLFPLPGEFQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              PL G FQV NALVAAGL +A      D A V   LE L  VPGR E +G  + GG  
Sbjct: 295 VRLPLVGGFQVENALVAAGLALATPAGQADPAGVFAALEGLTGVPGRMERIG-EANGGLC 353

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH   +LE +L  +R   SGR++VVFGCGG+RD GKRPIMG IA  LAD  IVTDD
Sbjct: 354 LVDYAHKPEALEHVLSALRPFASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDD 413

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPR+E+P  IRA I+   PG  E G+R EAIRT +  L   DVLVVAGKGHET  IV   
Sbjct: 414 NPRNEEPAAIRAAILAAAPGAEEIGDRAEAIRTGVRDLRAGDVLVVAGKGHETGQIVGP- 472

Query: 479 EKKMSVDCDIIREILGLI 496
                 D D +R  +  +
Sbjct: 473 RVLPFSDHDTLRAAIAEL 490


>gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
 gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
          Length = 505

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 162/510 (31%), Positives = 244/510 (47%), Gaps = 36/510 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+   F EL    +I         +  V  DSR    G +FVA+ G   DGH ++  
Sbjct: 4   LHDLLSDLFAELRGDDAIM--------VTRVVYDSRQATPGSLFVALRGTHTDGHCYLAD 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A ++GA A VV      +  S  +     I  V +TR  L+  A+R YG    ++  + V
Sbjct: 56  AASRGAVAAVVE-----EWPSQDVPGLRTIARVSDTRVALAAIAARFYGHPASDLGLIGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++    +  I + +G  +  IG  +        A D R TTP  + +   L+ +
Sbjct: 111 TGTDGKTTTTFLIDAILRTAGYRTGLIGTVALRIGDEFVAHDLRQTTPESLDVQAFLARM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL--FE 235
            + GV    VEA+SHGL+ HRLD         TN+ ++H+D+H T + Y  AK RL  F 
Sbjct: 171 RATGVAWAVVEATSHGLELHRLDHCPFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLEFV 230

Query: 236 ELLPKESP---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQV 291
              P+ +     ++ ADD  ++ + + A +    +L     GK +   +           
Sbjct: 231 RDRPERAYPRGIVLNADDEGARSLARFAGS--VPILWYSATGKAVLVAENARMTDKGTSF 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +  D    L G + V NAL AAG  I +GI    V+  L++L  VPGRF  +  
Sbjct: 289 RLRYGDQAADVHLRLFGLWNVENALAAAGTGILLGIPLDQVVTGLQQLAAVPGRFTPIDC 348

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +  R+ VDYAHT  S E +L   R++  GR+IVVFG  G+RD+ KR + G IA  LA+
Sbjct: 349 -GQPFRVIVDYAHTPKSFERVLPLARSLARGRVIVVFGSAGERDRIKRRLQGAIAARLAE 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            A+ T ++PR EDP+ I AEI  G           F+   +R  AIR A       D+++
Sbjct: 408 FAVFTSEDPRHEDPDAIIAEIAEGAREAGAQEGQQFVCVEDRALAIREAFRRARPGDIVL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + GKGHE   I+   E++   +    R+ L
Sbjct: 468 LLGKGHEQC-ILYGDERRPWNEEAEARQAL 496


>gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
 gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
          Length = 490

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 149/495 (30%), Positives = 243/495 (49%), Gaps = 28/495 (5%)

Query: 10  DFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +   +++ L    ++ R   + +I  VS+ S  ++ G +F+   G K D H  IP+ + +
Sbjct: 2   NISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VV     L         + P + V ++R F +  AS  +    +++L    T   
Sbjct: 62  GAVAVVVEKEIDL---------DFPHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTN 112

Query: 127 SSVAS--FVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
               +   +  +    G     +      I   +  + +TTP  I +  A+      G  
Sbjct: 113 GKTTTTMMIYHMLTSLGERGSVLTTAVKRILGSSYYDDITTPDAITILSAMKENKEGGGK 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ LL  +  
Sbjct: 173 FFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGV 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           A++        E +  A N   R ++ G  +     L  +       Q  +         
Sbjct: 232 AVLN-------ESLADAFNRKSRKITFGTSKNADYRLGNIEVNWEGTQFVLETPDGLLKV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD 361
                G+F  YNA  A      +G D   +   LE    V GRFE V G    G  + VD
Sbjct: 285 FTKAIGDFNAYNAAAAIAALHQLGYDPKELASSLETFTGVEGRFEVVRGAKKIGLNVVVD 344

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LA++ I+T D+PR
Sbjct: 345 FAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLANVVILTTDDPR 404

Query: 422 SEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            EDPE+I  ++I GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   I+   
Sbjct: 405 GEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEE 464

Query: 479 EKKMSVDCDIIREIL 493
           +K    D +++ EIL
Sbjct: 465 KKVPFKDREVVEEIL 479


>gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Azotobacter vinelandii DJ]
 gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii
           DJ]
          Length = 487

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 156/489 (31%), Positives = 237/489 (48%), Gaps = 16/489 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL   P       I E++ DSR ++ G +F+A+ G ++DG   IP A+      
Sbjct: 1   MPMPLNQL--LPQAETALLIRELTLDSRQVRPGDLFLAVPGGRQDGRAHIPDAL----AR 54

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
              + AY      +      P++ +      LS  A R YG+      ++ VTGT+GK+S
Sbjct: 55  GAAAVAYEAAGAPSFADGGVPLVPIKGLAGQLSAIAGRFYGEPSRALCLVGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  + Q     G     IG          Q  R TTP PI +  AL+ L   G   VS+
Sbjct: 115 VSQLLAQALDLLGERCGIIGTLGNGFHGALQSGRHTTPDPISVQAALAGLKQAGARAVSM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L Q R+  +      FTNL RDH+DYH +  AY  AK RLF    P     ++ 
Sbjct: 175 EVSSHALAQGRVSALDFDVAIFTNLSRDHLDYHGSMDAYGAAKARLFA--WPGLRCRVLN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +   A+ +     S+  +   +H ++        +  ++    +     PL 
Sbjct: 233 LDDPFGRLLAGEANASRLIGYSLESRSAQVHCRRAHFDEQGVRAEVATPQGEGLLHSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L   G  + +      +L  + +L    GR + +G  ++   + VDYAHT +
Sbjct: 293 GRFNLSNLLAVVGALLGLDYALDEILRVVPQLQAPAGRMQRLGGGAK-PLVVVDYAHTPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R    GR++ +FGCGGDRD+GKRP+M  +A  LAD  ++TDDNPRSE PE+
Sbjct: 352 ALEKVLEALRPHVRGRLLCLFGCGGDRDRGKRPLMAAVAERLADALLITDDNPRSESPEQ 411

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I  GI           R +AI   I   +  DVL++AGKGHE    + NG ++   
Sbjct: 412 IFADIRSGIGVPEKVTCLHGRGQAIARLIAGADASDVLLLAGKGHEDYQEI-NGVRQPFS 470

Query: 485 DCDIIREIL 493
           D +   + L
Sbjct: 471 DIEEAAKAL 479


>gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas
           maltophilia R551-3]
          Length = 502

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 154/483 (31%), Positives = 224/483 (46%), Gaps = 17/483 (3%)

Query: 14  LINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++QL     +   +  +  +  DSR ++ G  FVAI G    G  F+ QA A GA AI+
Sbjct: 6   LLSQLLPDVALAGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGAGAIL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
                      A + +    + V   R  +   A + +G     +  + VTGT+GK+S  
Sbjct: 66  -----FEPPAPAELPAPVDAIAVPGLRARMGAMADQFHGAPSRAMAMVGVTGTNGKTSTV 120

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + Q     G  S  IG     +    +    TTP  + +   L+ L   G   V++E 
Sbjct: 121 QLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEV 180

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH LDQ R+D +      FTNL RDH+DYH    +Y  AK RLF    P    A+I  D
Sbjct: 181 SSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHR--PGLKAAVINLD 238

Query: 250 DAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DA+ +++          +   S G     +  + +          ++++G+      PL 
Sbjct: 239 DAFGRQLFAGLPAGVQPIGLSSRGATDAIVRAEALQLDGRGIAFELAIDGQRAAVQSPLL 298

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L  AG   A G   A + E L  L  + GR   +G       + VDYAHT +
Sbjct: 299 GRFNVDNLLAVAGTLHAQGQPLARIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPD 358

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L ++     G +  VFGCGG+RD GKRP M  IA  LA+  IVTDDNPR ED + 
Sbjct: 359 ALEQALDSLHGHLQGTLFCVFGCGGERDTGKRPQMAAIAERLANQVIVTDDNPRGEDGDV 418

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I+ G         + +R  AI  A++  N  D++++AGKGHE    V NG +    
Sbjct: 419 IVADILAGFTDASAVTVQRSRARAIGLAVKRANAGDIILIAGKGHEPYQEV-NGVRHDFD 477

Query: 485 DCD 487
           D +
Sbjct: 478 DTE 480


>gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 495

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 230/476 (48%), Gaps = 18/476 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  +  DSR +  G  FVAI G    G  F+ QA A GA A++             +
Sbjct: 19  DVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEPPAP---NGMPV 75

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++   + V   R  L + A + +G+  H   ++ VTGT+GK+S    + Q     G  +
Sbjct: 76  PADA--IAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +   A     TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF         A++  DDA+ + +     + 
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTR--AGLKAAVVNLDDAFGRTLFASL-DP 250

Query: 264 GCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             R + V  + +       + +   HN     ++++G+      PL G F V N L  AG
Sbjct: 251 ALRAIGVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAG 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+  
Sbjct: 311 ALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHA 370

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
             R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPRSED + I A+I+ G     
Sbjct: 371 QDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPD 430

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             I + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 431 AAIVQRDRAAAIHQAIGMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
 gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
          Length = 498

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 149/483 (30%), Positives = 220/483 (45%), Gaps = 17/483 (3%)

Query: 14  LINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++QL     +   +  +  +  DSR ++ G  FVAI G    G  F+ QA A GA AI+
Sbjct: 2   LLSQLLPDVALVGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGASAIL 61

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
                  +  +         + V   R  +   A + +G     +  + VTGT+GK+S  
Sbjct: 62  FEPPAPAELPAPADA-----IAVPGLRARMGAMADQFHGAPSRAMAMVGVTGTNGKTSTV 116

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + Q     G  S  IG     +    +    TTP  + +   L+ L   G   V++E 
Sbjct: 117 QLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEV 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH LDQ R+D +      FTNL RDH+DYH    +Y  AK RLF    P    A++  D
Sbjct: 177 SSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHR--PGLKAAVVNLD 234

Query: 250 DAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DA+ +++          +   S G     +  + +          + ++G+      PL 
Sbjct: 235 DAFGRQLFAGLPAGVQPIGLSSRGATDASVRAEALQLDGRGIAFELVIDGQRAAVQSPLL 294

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L  AG   A G     + E L  L  + GR   +G       + VDYAHT +
Sbjct: 295 GRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPD 354

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L+  L ++     G +  VFGCGG+RD GKRP M  IA  LA+  IVTDDNPR ED + 
Sbjct: 355 ALKQALDSLHGHLHGALFCVFGCGGERDTGKRPQMAAIAERLANQVIVTDDNPRGEDGDV 414

Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+I+ G         + +R  AI  A++     D++++AGKGHE    V NG +    
Sbjct: 415 IVADILAGFQNADAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHEPYQEV-NGVRHDFD 473

Query: 485 DCD 487
           D +
Sbjct: 474 DTE 476


>gi|330501919|ref|YP_004378788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
 gi|328916205|gb|AEB57036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
          Length = 487

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 150/481 (31%), Positives = 237/481 (49%), Gaps = 17/481 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +NQL   P       I E++ DSR ++ G +F+A+ G ++DG + I  A      A
Sbjct: 1   MPMPLNQL--LPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADA-----IA 53

Query: 71  IVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
              ++     + +A++ +++ +LV V      LS  A R YG+    +  + VTGT+GK+
Sbjct: 54  RGAAAVAFEAEGAASMHADSAVLVPVKGLAGQLSAIAGRFYGEPSRALYLVGVTGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV+  + Q     G     +G          +  + TTP P+ +   L+ L   G   V+
Sbjct: 114 SVSQLLAQALDLLGQPCGIVGTLGNGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVA 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGLDQ R+  ++     FTNL RDH+DYH + +AY  AK +LF    P     +I
Sbjct: 174 MEVSSHGLDQGRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFA--WPNLRCRVI 231

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DDA+ +E+  + H +     S+     F++  +     +  +  +     +      L
Sbjct: 232 NLDDAFGRELAAQTHESRLIGYSLNDADAFLYCSEAHFDDHGVRARLVTPRGEGVLRSNL 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F + N L   G  + +      +L+ L +L    GR + +G       + VDYAHT 
Sbjct: 292 LGRFNLSNLLAVVGALLGLDYALDEILKVLPQLQGPAGRMQRLG-GGDKPLVVVDYAHTP 350

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M  +A  LAD+  VTDDNPR+E+P 
Sbjct: 351 DALEKVLEAMRPHVEGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRTEEPA 410

Query: 427 KIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +I A+I  G            R +AI   +      DVLV+AGKGHE    +    +  S
Sbjct: 411 QIVADIRAGFAAPERVQFIHGRGDAIARLVAQAEAADVLVLAGKGHEDYQEIMGVRQPFS 470

Query: 484 V 484
            
Sbjct: 471 D 471


>gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
 gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
          Length = 490

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 149/495 (30%), Positives = 243/495 (49%), Gaps = 28/495 (5%)

Query: 10  DFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +   +++ L    ++ R   + +I  VS+ S  ++ G +F+   G K D H  IP+ I +
Sbjct: 2   NISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRKGEKFDSHEIIPEVIEK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VV     L         + P + V ++R F +  AS  + +  +++L    T   
Sbjct: 62  GAVAVVVEKEIDL---------DFPHIQVFDSRYFEAKVASLFFDEPWKDVLTFGVTGTN 112

Query: 127 SSVAS--FVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
               +   +  +    G     +      I   +  + +TTP  I +  A+      G  
Sbjct: 113 GKTTTTVMIYHMLTSLGEKGSVLTTAVKRILENSYYDDITTPDAITILSAMKENKEGGGK 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ LL  +  
Sbjct: 173 FFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGI 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           AI+        E +    N   R ++ G  +     L  +       +  +         
Sbjct: 232 AILN-------ESLADTFNRKSRKITFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD 361
                G+F  YNA  A      +G D   +   LE    V GRFE V G    G  + VD
Sbjct: 285 FTKAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD 344

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LAD+ I+T D+PR
Sbjct: 345 FAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPR 404

Query: 422 SEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            EDPE+I  ++I GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   I+   
Sbjct: 405 GEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEE 464

Query: 479 EKKMSVDCDIIREIL 493
           +K    D +++ EI+
Sbjct: 465 KKVPFQDREVVEEII 479


>gi|50086343|ref|YP_047853.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
 gi|49532319|emb|CAG70031.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
          Length = 499

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 146/498 (29%), Positives = 238/498 (47%), Gaps = 34/498 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGA 68
           E+I+ +    ++WR++       DSR+IQ   +F+A+       K    +F   A+AQGA
Sbjct: 7   EMISAIDA-AIEWRDQPFQGFCLDSRYIQKDQLFIALTSYSQPEKT--RIFAETALAQGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTS 124
             I+      L+             V  + R  +  +      K    +   I+AVTGT+
Sbjct: 64  LGIISEQPLGLE----------REWVCADVRHRMGQWQKNYLQKTEPVNAARIIAVTGTN 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++++  V ++          +G T   I      +  TT   + L  AL     +G  
Sbjct: 114 GKTTISRLVAELLTLQQQRCAVMGTTGNGILPHLNPSTHTTLDALQLQSALHQYVKEGAR 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             S+EASSHGL+Q RL+G  +    ++NL RDH+DYH T  AY  AK RLF         
Sbjct: 174 FASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLAAYAEAKSRLFA--FKSLKV 231

Query: 244 AIIYADDAYSKEVMKRAHN--AGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           A+I  DDAY++ +   A    A  ++L+    Q     +K++    +  +  +     ++
Sbjct: 232 AVINQDDAYAELMKAVAAQNPAQPQILTYSLTQSADYSVKELQYSLSGARFILVGPKGEY 291

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G F V N + A       G     +++ + +L   PGR + +    +     V
Sbjct: 292 LVESPLLGHFNVENLIAALIAAEQAGFALEELVKTVPQLIGAPGRMQVI--RDQDRLFVV 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++L  +LK +R     ++  VFGCGGDRD+GKRP+M + AL+ A+  I+T DNP
Sbjct: 350 DYAHTPDALNQVLKTLRRHVQQQLWAVFGCGGDRDRGKRPLMTQAALNGANPVILTSDNP 409

Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R+E+P++I A++  GI        E  +R EAI+  ++     D++V+AGKGHE    + 
Sbjct: 410 RTENPKQIFADMKTGIDFSHHQIYEIHDRREAIKYVVQHAQAGDIVVIAGKGHENYQEI- 468

Query: 477 NGEKKMSVDCDIIREILG 494
            G +    D   ++  + 
Sbjct: 469 QGVRHWFDDVTEVQSAIN 486


>gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
 gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
          Length = 496

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 164/506 (32%), Positives = 248/506 (49%), Gaps = 34/506 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              +I           + +I  V+ DSR +  G +F A+ G + DGH F  +A  +GA A
Sbjct: 3   LSTVIAGSGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           +V               +   +L+  + R+ ++L A+  +G+  E +   AVTGT+GK++
Sbjct: 63  VVAERPVEC--------APARLLLAPSARRAMALAAASFHGRPAERLRMAAVTGTNGKTT 114

Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V   V+   + + +    +G  S       +    TTP    +   L+ + + G     +
Sbjct: 115 VTYLVEACARAAAVPVGVLGTISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L Q R+ GI+  A  FTNL RDH+DYH+   AYF AK RLF E L     A+I 
Sbjct: 175 EVSSHALAQERVAGIRFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVIN 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           A D +   +  +    G RV   G + G  +   +V         T            PL
Sbjct: 235 ARDPWGARLADQL-GPGPRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGALAIRSPL 293

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  + N L AAGL + +G+    V+  L   H  PGR E +  + RG  ++VDYAHT 
Sbjct: 294 VGQHNLENLLCAAGLALGLGLPPDAVVRGLAASHGAPGRLERI--DGRGLSVFVDYAHTD 351

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L  ++  +R ++  R+I VFGCGGDRD+GKRP+MG      AD+AIVT DNPR+EDP 
Sbjct: 352 DALARMIAALRGLSPRRLICVFGCGGDRDRGKRPLMGAA-AAAADLAIVTSDNPRTEDPL 410

Query: 427 KIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I A+++ G+                  G++ + +R  AI  A+E   + D ++VAGKGH
Sbjct: 411 AIIADVLPGLDRAGKPALGAARARTGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKGH 470

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    V   EK+   D D  R+ LG+
Sbjct: 471 EDYQQVGA-EKRPFSDRDEARKALGI 495


>gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
 gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
          Length = 492

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 150/493 (30%), Positives = 236/493 (47%), Gaps = 20/493 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L   L    +      +NE+  DSR ++ G +FVAI G++ DG  FI +AI  GA A
Sbjct: 1   MRDLHTILKHLEIDAARLMVNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIENGASA 60

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           I+       +          P+ +V    K L + AS+ Y +  +  +++ VTGT+GKS+
Sbjct: 61  IIADRLCEFESDFE------PLYLVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKST 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             + +  + Q     +  IG             + TTPS + L + LS L ++    V++
Sbjct: 115 TTAMIAHLAQFCHTQAAIIGTLGYGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGL QHR+D     A  FTNL RDH+DYH   Q+Y +AK+ LF +        I+ 
Sbjct: 175 EVSSHGLVQHRVDQCYFKAAVFTNLSRDHLDYHGDMQSYGDAKLMLFRDF--DADHVILN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            DD  +++ +++                   +F++   V          ++    D    
Sbjct: 233 QDDGQAEQWIEKYSFNSLICYGRKNLAPKNAQFVYFSDVQYSATGISAQLTTSWGDVAIK 292

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF +YN   A    +A+G     ++   E L  V GR +   T        VDYA
Sbjct: 293 SPLFGEFNLYNLTAALATLLALGYPLTQLVAGCEYLQPVAGRMQAF-TAPSMPTCVVDYA 351

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L + L+ ++    G +  VFGCGGDRD+GKR +M + A   AD  I+T DNPRSE
Sbjct: 352 HTPDALALALQALQQHVPGGVSCVFGCGGDRDKGKRVLMAQAAEQFADKVIITSDNPRSE 411

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I  ++  G+        + +R  AI+ AI+     +V+++AGKGHE   I+ +  +
Sbjct: 412 DPNDIINDVAAGLEHPENAHLEADRGAAIQFAIDNAKAGEVILIAGKGHEDYQIIGD-TR 470

Query: 481 KMSVDCDIIREIL 493
               D   +++ L
Sbjct: 471 IDFCDRQFVQQQL 483


>gi|152996632|ref|YP_001341467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
 gi|150837556|gb|ABR71532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
          Length = 488

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 151/465 (32%), Positives = 235/465 (50%), Gaps = 14/465 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR +    +F A+ G   +G  ++   I  G +  VV +   LQ      R +  +
Sbjct: 29  LETDSRKVDQESVFFALPGVTSNGWDYLNDVIKLGCKVAVVPAELKLQ------RDDIEL 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +  K L       +GK P  ++AVTGT+GKSS+  ++ Q+ +  G SS  +G    
Sbjct: 83  VSVADPVKLLVACLHAFFGKMPSKMVAVTGTNGKSSICFYIAQLAKYIGFSSGLVGTFGV 142

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  + + TTP  + + +AL  ++ +GV  V+ EASSH LDQ R++G+      F+N
Sbjct: 143 GPLDRLSEAKQTTPDLLSMHRALMKMAEEGVDFVAFEASSHALDQGRIEGVPFQTAVFSN 202

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH    +Y  AK RLF       S +I   DD Y+  + + A  + C   S  
Sbjct: 203 LSRDHLDYHGDMNSYALAKRRLFS--FECVSHSIFCLDDGYAGFMAEGAARSSCHYYSEQ 260

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                 ++K++    +  +  +   G D     PL G F V NAL A         D A 
Sbjct: 261 DSRADFYVKQLMLEPSGCRFVLCHPGGDTPVFLPLLGCFNVQNALAAFASLWYGVDDKAT 320

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           ++  L  L   PGR + V        + VD+AHT+++LE+ L+ ++  T+GR+I VFGCG
Sbjct: 321 LIRGLSTLTGAPGRMDKVQLP-NAPLVVVDFAHTADALEVALQAVKEHTNGRLICVFGCG 379

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEA 448
           GDRD+GKRP+M   A+  AD   +T DNPR+E  E+I ++++        F  + +R  A
Sbjct: 380 GDRDRGKRPLMMAAAMKNADYVWLTSDNPRTESIEQIFSDVLAQTNKDAAFSFELDRRMA 439

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I  AI     +DV+++AGKGHET   +  G K    D +   + L
Sbjct: 440 IHQAILSAGPEDVILIAGKGHETYQDI-QGVKYHFNDKEEALKAL 483


>gi|241664312|ref|YP_002982672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12D]
 gi|240866339|gb|ACS64000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12D]
          Length = 514

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 171/511 (33%), Positives = 244/511 (47%), Gaps = 37/511 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQ 62
           I      +++ L +      +     ++SD+R ++ G +FVA V GN   + DG   IPQ
Sbjct: 12  IAARLVPVVDWLRVQAPAGAD-----LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119
           AI  GA A++  +      ++    +   IL VD   +     A++ YG        ++ 
Sbjct: 67  AIEAGASAVLAEAHG----YTMPADAPVRILPVDGLAELAGPLAAQWYGVPGPEALRVIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S + ++ Q   + G     +G   T           TTP  I L ++L+ L 
Sbjct: 123 VTGTNGKTSCSQWIAQALTKHGERCAVVGTLGTGFVDGLAVTGFTTPDAIQLQRSLADLH 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   +++E SSHGL+Q R+DG       FTNL +DH+DYH T   Y  AK RLF    
Sbjct: 183 RAGARAIAMEVSSHGLEQGRVDGTCFDIAVFTNLTQDHLDYHGTMAEYELAKARLFG--W 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-------IHLKKVCAIHNKQQV 291
           P    A+I  DDA    +++ A  A    +  G  G+          L+      ++   
Sbjct: 241 PGLRAAVINRDDAAGVRLLQNAR-ADIETIEYGIDGEAAAQHGAKQWLRASNVRAHRTGT 299

Query: 292 TISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           T  V+G         P  G F V N L   G  +A G+     + HLEKL  V GR E  
Sbjct: 300 TFDVDGSFGHATVHAPTLGLFNVSNLLAVLGALLAAGVPWPDAIAHLEKLQPVSGRMERF 359

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           G    G  + VDYAHT ++LE  L+ +  IT    G +  VFGCGGDRD GKRP MG IA
Sbjct: 360 G-GEDGPLVVVDYAHTPDALEQTLRALAPITEARGGNLWAVFGCGGDRDPGKRPQMGAIA 418

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLV 463
             LA   ++T DNPRSEDP+ I  EI  G+       +  +R  AI  A+   +  DV+V
Sbjct: 419 ERLAPHVVLTSDNPRSEDPQHILDEIADGMENPRAATQIEDRAAAILHAVRHADALDVIV 478

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           VAGKGHE+   +  G K+   D + +R  L 
Sbjct: 479 VAGKGHESTQEIA-GRKRPFSDQEHVRLALA 508


>gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
 gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
          Length = 522

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 159/516 (30%), Positives = 248/516 (48%), Gaps = 40/516 (7%)

Query: 8   YKDFPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
            +  PELI  L I   +     +  +  ++ + R  Q G+IFVA  G + DGH FIP AI
Sbjct: 6   RRTLPELIRHLPIQVFWEGTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTFIPHAI 65

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTG 122
            +G  A+V                + P L V N+R+ L+  ++  Y    H   ++ VTG
Sbjct: 66  ERGIVAVV--------GMQEISGLSIPYLRVSNSREALAYLSAAFYNFPAHEMTVIGVTG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLT--TPSPIYLAKALSYLSS 179
           T GK++ ++ + QI   +G S+  +    + I     D      TP    + + LS + +
Sbjct: 118 TDGKTTTSNLIYQILLAAGHSAGIVSTVNAVIGDEVVDTGFHVTTPEAPEVQRYLSRMRA 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-- 237
            G+THV +EA+SHGL+QHR+ G +   G  TN+  +H+DYH + +AY  AK RLF  L  
Sbjct: 178 AGLTHVVLEATSHGLEQHRVTGCEFDVGVVTNITHEHLDYHGSYEAYRAAKGRLFTMLSE 237

Query: 238 ---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
               P  +P  A++  DD   + +           +S G  +G  +  + +    ++ + 
Sbjct: 238 TPEKPHGNPRLAVLNRDDQSYEYLQSLVR---VPAVSYGLAEGADLRAENIRYEADRLRF 294

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            I            L GE+ V N L A A   + +GIDS    + +  +  VPGR E + 
Sbjct: 295 DIVGRDFRQPVETCLVGEYNVSNCLAAFAATVLGLGIDSQHAAQGIANMSGVPGRMERIH 354

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +     VD+AHT N+L+  L   R IT GR+I VFG  G RD+ KR +M +++  LA
Sbjct: 355 M-GQSFHAIVDFAHTPNALKQALLTARQITRGRVIAVFGSAGLRDREKRRLMAEVSAQLA 413

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           DI+I T ++PR+E  E I  E+  G           F    +R +AIR A++M    D++
Sbjct: 414 DISIFTAEDPRTESLEGILEEMARGAESQGAVRGKQFYLVPDRGDAIRMAVQMAKPDDLV 473

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDII-REILGLIL 497
           +  GKGHE    +  GE +   D  +  R  L  +L
Sbjct: 474 IACGKGHE--QSMCFGETEYPWDDRVAMRAALAELL 507


>gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium sp. P08]
          Length = 529

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 149/494 (30%), Positives = 234/494 (47%), Gaps = 23/494 (4%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  L           I  ++ DSR ++ G ++V + G    G  F   A   GA A++
Sbjct: 29  DLMASLDGCRADGNGPAITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVL 88

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
                +       + +  P+++VD+ R  +++ A+R++G   +   +  +TGT+GK++ A
Sbjct: 89  TDEHGAK----LAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTA 144

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVS 186
             V+   + +G     IG         +       +TTP    L    + +  +G + V 
Sbjct: 145 FLVEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVV 204

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+DG      +FTNLGRDH+D+H+T   YF AK RLF   L +     I
Sbjct: 205 MEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGV--I 262

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD   +++++R    G R ++   +Q     +    A        ++    +      
Sbjct: 263 NVDDPRGRQLIERMQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELS 322

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPGEF V NA +A  +    G+    V + L     VPGR E V   +      VD+AHT
Sbjct: 323 LPGEFNVRNAAMALAMLETAGLAFDDVADGLCSAQ-VPGRMERVDLGADAPTALVDFAHT 381

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++   L   R++   GR+I V G GGDRD  KR  MG++A + ADI ++TDDNPR+ED
Sbjct: 382 PQAIASALDAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTED 441

Query: 425 PEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           P  IRA ++ G           ++ G R EAI  A+ M    DV+ V GKGHET   + +
Sbjct: 442 PAVIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHETGQHIGS 501

Query: 478 GEKKMSVDCDIIRE 491
            E     D ++IR 
Sbjct: 502 -EVLPFDDREVIRN 514


>gi|91786968|ref|YP_547920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
 gi|91696193|gb|ABE43022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
          Length = 501

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 142/471 (30%), Positives = 216/471 (45%), Gaps = 18/471 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           RER    + +DSR +  G  F+A  G   DG  ++  A+A GA A +V     LQ F   
Sbjct: 16  RERVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARACLVE----LQGFEPR 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  +      +      A+  + +      + AVTGT+GK+S   ++ Q   R G  
Sbjct: 72  GPDDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWWLAQALGRLGRK 131

Query: 144 SFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              +G     +        LTTP P+ L + +     +G    ++EASS GL + RLD  
Sbjct: 132 CGVVGTLGIGAPGAVVFTGLTTPDPVLLQQQMRRFVDEGFATCALEASSIGLVERRLDAT 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +    FTN  +DH+DYH + Q Y+ AK  LF    P    A+I  DD    E+      
Sbjct: 192 TIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFS--WPGLKAAVINVDDGKGLELSASLAG 249

Query: 263 AGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +   V ++   G    H +K+    N     +    +       L G++ VYN L     
Sbjct: 250 SDLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSSKLVGQYNVYNLLGVIAA 309

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
             A+GI     +     L  VPGR + +        + +DYAHT ++LE +L  ++ +  
Sbjct: 310 LRAMGIPLVDAVAACADLLPVPGRMDTLAEEGL-PLVVIDYAHTPDALEKVLTALQPVAR 368

Query: 381 --SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              G++  VFGCGGDRD GKRP+M  +A   AD  +VT DNPRSE+P  I  +++ G+  
Sbjct: 369 SRGGQLWCVFGCGGDRDAGKRPLMAAVAEKNADRVVVTSDNPRSENPLAIIDQVLRGLNH 428

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                 + +R  AI  A+ +    DV+++AGKGHE+   V  G K    D 
Sbjct: 429 RDAVHVQADRAMAITHALSLAQAHDVVLLAGKGHESYQEV-QGVKLPFSDR 478


>gi|240141488|ref|YP_002965968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
 gi|240011465|gb|ACS42691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
          Length = 492

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 215/473 (45%), Positives = 283/473 (59%), Gaps = 11/473 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF   A      A    +        A + 
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAA-----AAAGAVAVAGEGTRPADLP 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             T  + V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI  R G  S  +
Sbjct: 80  EATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASL 139

Query: 148 GPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +++   +    TTP P+ L + L+ L  +G+T +++EASSHG++Q RLDG++L A
Sbjct: 140 GTVGIVTNRGAEYGSLTTPDPVTLHETLARLVDEGITDLAMEASSHGIEQRRLDGVELTA 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  AG  
Sbjct: 200 AAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHA 259

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI- 325
           + + G  G FI L +       Q +T++  GKD+    PL G FQV NALVAAGL +A  
Sbjct: 260 IRTTGRGGDFIRLVEAGTEGFAQSLTLAHAGKDYRVRLPLVGGFQVENALVAAGLALATP 319

Query: 326 --GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
               D A V   LE L  VPGR E +G  + GG   VDYAH   +LE +L  +R   SGR
Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFASGR 378

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           ++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG  E G
Sbjct: 379 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 438

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +R EAIR A+  L   DVLVVAGKGHET  IV         D D +R  +  +
Sbjct: 439 DRAEAIRAAVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAIAEL 490


>gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
 gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
          Length = 487

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 226/482 (46%), Gaps = 14/482 (2%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            +F    R+  I E++ DSR ++ G +F+A+ G K DG   I  A+         + AY 
Sbjct: 7   KLFAHASRDPLIRELTLDSRAVRPGDLFLAVPGAKVDGRAHIADAL----ARGAAAVAYE 62

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI 136
            Q  S    +  P++ V      LS  A R YG+    +  + VTGT+GK+SV   + Q 
Sbjct: 63  EQGASVLPITEVPLIPVKGLIGQLSQIAGRFYGEPSRQLELVGVTGTNGKTSVTQLLAQA 122

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G     IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH L+
Sbjct: 123 LDALGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKAVAMEVSSHALE 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  +       TNL RDH+DYH +  AY  AK +LF          ++  DD + + 
Sbjct: 183 QGRVAALDFDIAVMTNLSRDHLDYHGSMGAYEAAKAKLFA--WSSLRARVVNLDDDFGRR 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + +    +     S+      +  K+     +  +  I     +      L G F + N 
Sbjct: 241 LAEAHGQSRLISYSLQDPAATLFCKQAAFNDDGVRAVIVTPQGEHALRSRLLGRFNLSNM 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A    +A+      +L+   +LH   GR + +G       + VDYAHT ++LE +L+ 
Sbjct: 301 LAAVATLLALDYPLDEILKVTPQLHGPIGRMQRLG-GGDKPLVVVDYAHTPDALEKVLEA 359

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R    G+++ +FGCGGDRD GKRP+M  +A  LAD  +VTDDNPR+EDP +I  +I  G
Sbjct: 360 LRPHAHGKLLCLFGCGGDRDSGKRPLMAAVAERLADRVLVTDDNPRTEDPLRIFDDIRPG 419

Query: 436 IPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                +      R EAI   I      DV+V+AGKGHE    + NGE+    D     + 
Sbjct: 420 FAKPADIEFVAGRGEAIAHLIATAAADDVIVLAGKGHEDYQEI-NGERHDFSDLVEAEKA 478

Query: 493 LG 494
           L 
Sbjct: 479 LA 480


>gi|187479354|ref|YP_787379.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella avium 197N]
 gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bordetella avium 197N]
          Length = 939

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 154/474 (32%), Positives = 241/474 (50%), Gaps = 19/474 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR +  G +F+A  G + DG  +I  A+  GA  ++  S       + ++ +++ 
Sbjct: 29  HLRLDSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVLYDSDA----LTQSVVADSR 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V   R  L   A   YG+   ++  LAVTGT+GK+S   ++ +   R G     IG 
Sbjct: 85  VLPVAGLRGMLGELADGWYGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIGT 144

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +     +    LTTP  I L + ++ +   G   V++EASS GL+Q R+D ++LIA 
Sbjct: 145 LGGLLPDGVSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAA 204

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            +TNL RDH+DYH T + Y  AK  LF    P    A+I ADDA  + ++ +        
Sbjct: 205 GYTNLTRDHLDYHGTMEQYEAAKALLF--NWPGLQAAVINADDAAGRRLLAKLPVGLASA 262

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            ++ +    +    + A  + Q  T++        +  L G   V N L+ AGL + +G 
Sbjct: 263 YAIDHAEADVRAFDLQATAHGQVFTLATSEGQAQVVTGLLGHHNVSNLLLVAGLLLRLGW 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGT--NSRGGRIYVDYAHTSNSLEMILKNIRTIT---SG 382
             A V   +     V GR + V    +++G  + VDYAHT ++LE  L  +R +    +G
Sbjct: 323 PLAAVAREVAAAAPVDGRLQAVAPVGSAQGPLVVVDYAHTPDALERALLALRPVAQARNG 382

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GF 439
            ++ +FGCGGDRD GKRP MG+IA +LAD  IV+ DNPRSE P+ I  +++ G+      
Sbjct: 383 ALVCLFGCGGDRDPGKRPEMGRIAGELADRIIVSSDNPRSEAPQAIIDQVLAGVGPDLAL 442

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + +R  AI  AI     +DV+++AGKGHET   +  G +    D +  R  L
Sbjct: 443 RAESDRALAILHAIWDSWPEDVVLLAGKGHETYQEIA-GRRLAFDDREWARAAL 495



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/430 (20%), Positives = 161/430 (37%), Gaps = 35/430 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55
           L+     E   +++   + + +R+          +  VS+D+R + A  IFVAI G   D
Sbjct: 466 LLAGKGHETYQEIAGRRLAFDDREWARAALLLPHVAGVSTDTRSVAADEIFVAISGENFD 525

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH ++             + A +         S+ P LV+  TR  L   A+    +   
Sbjct: 526 GHRYL--------AQAQAAGACAAVVAHRVSDSSLPQLVLGETRHALGRLATAWRARFSL 577

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++    +  I         +    +T  +F  D  L            +
Sbjct: 578 PVIAVTGSNGKTTTKEMISAILAAW---QGEAHRLATSGNFNNDIGLPLTLLRLREGYRA 634

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G+ H        G   +     +       N  R+H ++    +A       +  
Sbjct: 635 AVVELGMNHP-------GEIAYLAPMAQASVALVNNAQREHQEFLHGVEAVARENGAVLS 687

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
            L P++  A+   DD Y+    + A     RVL  G Q G  ++ +K+    +     + 
Sbjct: 688 AL-PEDGVAVYPGDDVYTPIWDELAGAR--RVLRFGLQPGLDVYAQKIRPDASGTLCQVV 744

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D + P+PGE  + NAL A    +A G   A  +  LE    V GR +   T++ 
Sbjct: 745 TPMGVADIVLPVPGEHNLRNALAAIACALAAGAPLASAVRALEGFSAVKGRMQRKETSNG 804

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLAD 411
              I   Y    +S+ + ++ +  +   R++V+   G   D+G    R + G       D
Sbjct: 805 TILIDDTYNANPDSVRVAIEVLAQLPGPRVLVLGDMGEVGDEGPAMHREVGGYARDQGID 864

Query: 412 IAIVTDDNPR 421
             +   D  R
Sbjct: 865 AMVTLGDASR 874


>gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
 gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
          Length = 555

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 139/495 (28%), Positives = 221/495 (44%), Gaps = 22/495 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L  QL          ++  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 66  LADLAGQLGA-EQPGSAAEVTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGAVA 124

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++   + + +       +  P LVVD+ R  +   A+ +YG+   ++L   +TGTSGK++
Sbjct: 125 VLTDPSGAER----AAAAGLPALVVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTT 180

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   +    +         +      +  TTP    L    + +  +GV  V +E
Sbjct: 181 TAYLVEGGLRTVRSTGLIGTVEMRVGDERIKSERTTPEATDLQALFAVMRERGVDSVVME 240

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG       F NL  +H+++H   + YF AK +LF     +     +  
Sbjct: 241 VSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSRLGV--VNL 298

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD Y + ++  A        + G+       + V         T +  +G+      PLP
Sbjct: 299 DDEYGRRLVDEATVPVVTFSAEGHPDADWRAEDVRVGPLDSTFTVVGPKGERISARSPLP 358

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A       GID     + +  +  VPGR E V    +     VDYAH ++
Sbjct: 359 GSFNVANTLAAVAALAVAGIDPQTAADGVAAVPGVPGRLERVDA-GQPYLAVVDYAHKTD 417

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +LK +R +T GR+ +V GCGGDRD  KR  MG     L+D A++T DNPRSEDP  
Sbjct: 418 AVESVLKALRKVTEGRLHIVLGCGGDRDTTKRAPMGAAMARLSDTAVLTSDNPRSEDPLA 477

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRT---------AIEMLNKQDVLVVAGKGHETVHIVTNG 478
           I A ++ G    +    R E +            +      D ++VAGKGHE    +  G
Sbjct: 478 ILATMLEGAAS-VPAHERGEVLLFEDRAAAIAATVARARPGDTVLVAGKGHEQGQDIA-G 535

Query: 479 EKKMSVDCDIIREIL 493
             +   D  ++RE +
Sbjct: 536 VVRPFDDRQVLREAI 550


>gi|187930162|ref|YP_001900649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12J]
 gi|187727052|gb|ACD28217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12J]
          Length = 514

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 166/486 (34%), Positives = 233/486 (47%), Gaps = 32/486 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA V GN   + DG   IPQAI  GA A++  +        A +R
Sbjct: 32  DLTSDTRKLKTGDVFVAYVLGNARQRGDGRPHIPQAIEAGASAVLAEAHGYAMPADAPVR 91

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               IL VD   +     A++ YG        ++ VTGT+GK+S + ++ Q   + G   
Sbjct: 92  ----ILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T           TTP  I L ++L+ L   G   +++E SSHGL+Q R+DG +
Sbjct: 148 AVVGTLGTGFVDALATTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTR 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+DYH T   Y  AK RLF         A+I  DDA    +++ A  A
Sbjct: 208 FDIAVFTNLTQDHLDYHGTMAEYELAKARLFG--WQGLRAAVINRDDAAGVRLLQNAR-A 264

Query: 264 GCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
               +  G  G          ++    V A        +              G F V N
Sbjct: 265 DVETIEYGIDGDAAAQHGARQWLRATNVRAHRTGTTFDVDGSFGRATVHVSTVGLFNVSN 324

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L   G  +A G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L+
Sbjct: 325 LLAVLGALLAAGVSWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLR 383

Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP+ I  E
Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGSIAERLAPHVVLTSDNPRSEDPQHILDE 443

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G+       +  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D + 
Sbjct: 444 IADGMDNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEIA-GRKRPFSDQEH 502

Query: 489 IREILG 494
           +R  L 
Sbjct: 503 VRLALA 508


>gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 534

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 168/517 (32%), Positives = 251/517 (48%), Gaps = 41/517 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL          +I           + +I  V+ DSR +  G +F A+ G   DGH F 
Sbjct: 38  MKLS--------AVIQGTGARGEAADDHEIVLVTGDSREVVPGALFFALPGAVRDGHDFA 89

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA A+GA AIV     +         +   +L+V ++R+ +++ A+  +G+  +   + 
Sbjct: 90  AQAAARGAVAIVAERPVAC--------APAALLLVPSSRRAMAVAAANFHGRPADALRVA 141

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   V+   + + L    +G  T       +    TTP    L   L+ +
Sbjct: 142 GVTGTNGKTTVTYLVEACARAADLPVGVLGTVTQRFPGVERPASHTTPESTTLHAVLAEM 201

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G   V +E SSH L Q R+ G++  A  FTNL RDH+DYH    AYF AK RLF E 
Sbjct: 202 RAAGTRAVVLEVSSHALAQERVGGMRFAAAGFTNLTRDHLDYHGDMDAYFAAKRRLFAEH 261

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
           L  +  A++ A D Y   +  +    G RV   G +       + V         T +  
Sbjct: 262 LAPDGVAVVNARDPYGARLAAQL-GPGRRVWRYGTRADDTLRAEAVSTGLAGIAATFATP 320

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PL G   + N L AAGL +A+GI    V   L      PGR E +  + RG 
Sbjct: 321 AGPIAIRSPLVGAHNLENLLCAAGLALALGIAPDAVGRGLSASAGAPGRLERI--DGRGV 378

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I+VDYAHT ++L   L+ +R +   R++ VFGCGGDRD+GKRP+MG++A   AD+ +VT
Sbjct: 379 SIFVDYAHTDDALGRALEALRALAPRRLLCVFGCGGDRDRGKRPLMGEVAARGADLVVVT 438

Query: 417 DDNPRSEDPEKIRAEIIHGIP-----------------GFIEKGNRIEAIRTAIEMLNKQ 459
            DNPR+E PE I A+++ G+                  GF+ + +R  AI  A+ + +  
Sbjct: 439 SDNPRTEAPEAIIADVLPGLERAGAARLSARAAADGARGFLVEADRRAAIALAVSLAHPG 498

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           D ++VAGKGHE   +V    K    D +  R+ LG +
Sbjct: 499 DAVLVAGKGHEDYQLVGT-TKHPFSDREEARKALGFV 534


>gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 496

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 164/506 (32%), Positives = 247/506 (48%), Gaps = 34/506 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              +I           + +I  V+ DSR +  G +F A+ G + DGH F  +A  +GA A
Sbjct: 3   LSTVIAGSGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAIA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           +V               +   +L+  + R+ ++L A+  +G+  E +   AVTGT+GK++
Sbjct: 63  VVAERPVEC--------APARLLLAPSARRAMALAAASFHGRPAERLRMAAVTGTNGKTT 114

Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V   V+   + + +    +G  S       +    TTP    +   L+ + + G     +
Sbjct: 115 VTYLVEACARAAAVPVGVLGTISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L Q R+ GI+  A  FTNL RDH+DYH+   AYF AK RLF E L     A+I 
Sbjct: 175 EVSSHALAQERVAGIRFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVIN 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           A D +   +  +    G RV   G + G  +   +V         T            PL
Sbjct: 235 ARDPWGARLADQL-GPGPRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPL 293

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  + N L AAGL + +G+    V   L   H  PGR E +  + RG  ++VDYAHT 
Sbjct: 294 VGQHNLENLLCAAGLALGLGLPPEAVARGLAASHGAPGRLERI--DGRGLSVFVDYAHTD 351

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L  ++  +R ++  R+I VFGCGGDRD+GKRP+MG      AD+AIVT DNPR+EDP 
Sbjct: 352 DALARMIAALRGLSPRRLICVFGCGGDRDRGKRPLMGAA-AAAADLAIVTSDNPRTEDPL 410

Query: 427 KIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I A+++ G+                  G++ + +R  AI  A+E   + D ++VAGKGH
Sbjct: 411 AIIADVLPGLDRAGKPSLGAARARAGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKGH 470

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    V   EK+   D D  R+ LG+
Sbjct: 471 EDYQQVGA-EKRPFSDRDEARKALGI 495


>gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
          Length = 490

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 185/492 (37%), Positives = 264/492 (53%), Gaps = 14/492 (2%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            PEL+ +  +    P   R   I+ +++DSR    G IF A+ G   DG  +IPQA AQG
Sbjct: 3   LPELLRRAGLDIALPATARACDIHGITADSRQAGPGMIFAALRGTHRDGRAYIPQAHAQG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A+++ +     D   T   +   LV  + R  L+  A  L  + P +I A+TGT+GK+
Sbjct: 63  AAAVLLEA-----DPGFTPPPDATYLVAADARAALARIARALTPRVPAHIAAITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTH 184
           S A F++QI     L +  IG    ++     +      TP  + L   L  ++  GV H
Sbjct: 118 STAEFLRQIWTVQALPAGTIGTLGAVAPCPLPDCGPVLTTPDSVGLMALLGAMAQAGVEH 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++EASSHGL+Q RLDG+   A  F+NL RDH+DYH T + Y  AK+RLF+ +LP+   A
Sbjct: 178 VAIEASSHGLEQRRLDGLAPYAAGFSNLTRDHLDYHGTTEHYRAAKLRLFDTVLPEGGIA 237

Query: 245 IIYAD--DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              AD  DA    +   A   G  + + G +G  + L         Q + +       + 
Sbjct: 238 AFNADMDDATCAALRAIAARRGLVLRTTGLRGGTLRLLDARPTPAGQVLHVMTPAGAREM 297

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G FQV N L+A  +       +   +  L +LH V GR E       G   YVDY
Sbjct: 298 EVPLVGRFQVDNMLLACAMAGRDEGAADHAVSLLPRLHGVRGRMERAAVLDSGAAAYVDY 357

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT +++E +L ++R  T GR+++V G GGDRD+GKRP+MG+IA  LAD  IVTDDNPR+
Sbjct: 358 AHTPDAIERLLCSLRPHTPGRLVIVMGAGGDRDRGKRPVMGEIATRLADRVIVTDDNPRT 417

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E P  IRA I+   PG IE G+R +AI   + +L   DV+VVAGKGHE    + + +   
Sbjct: 418 EQPAAIRAAIMAAAPGAIEIGDRRQAIAAGLGLLGPGDVMVVAGKGHEQGQTIGH-DVLP 476

Query: 483 SVDCDIIREILG 494
             D  +IR++LG
Sbjct: 477 FDDATVIRDLLG 488


>gi|313500442|gb|ADR61808.1| MurE [Pseudomonas putida BIRD-1]
          Length = 496

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 156/490 (31%), Positives = 234/490 (47%), Gaps = 22/490 (4%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+         + AY 
Sbjct: 8   KLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADAL----ARGAAAVAYE 63

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            Q  +    ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q 
Sbjct: 64  EQGANVLPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQA 123

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G     IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH L+
Sbjct: 124 LDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALE 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++      TNL RDH+DYH + +AY  AK +LF    P     ++  DD + + 
Sbjct: 184 QGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDDFGRR 241

Query: 256 VMKRAHNAG------CRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +               R+LS   +     +  ++     +  + TI     +      L 
Sbjct: 242 LAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATIVTAQGERILRSQLL 301

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A    +A+      +L+   +L    GR + +G       + VDYAHT +
Sbjct: 302 GRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLG-GGDKPLVVVDYAHTPD 360

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+EDP +
Sbjct: 361 ALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPLR 420

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I  G            R EAI   I      DV+V+AGKGHE    + NGE+    
Sbjct: 421 IFDDIRPGFTRPDDVEYVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI-NGERHDFS 479

Query: 485 DCDIIREILG 494
           D     + L 
Sbjct: 480 DLTEAEKALA 489


>gi|167465143|ref|ZP_02330232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 460

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 153/480 (31%), Positives = 234/480 (48%), Gaps = 38/480 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +     F  L+    I   +    +++ V  DSR I+ G +F+ I G   DGH F 
Sbjct: 1   MQLNE-----FASLLKTSQIVGDET--VEVSGVQIDSRKIKRGDLFICISGLVSDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            +A+  GA A+VV     +         N P ++V  TR  ++LFA+  YG   H   I+
Sbjct: 54  GKAVDNGAVALVVERRLDV---------NVPQILVKETRHAMALFAAHFYGYPAHDMKII 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++QI +  G  +  +G     I S       TT   + + K L+ +
Sbjct: 105 GVTGTNGKTTTTYLIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +  +E SSH LD  R+ GI   +G FTNL +DH+DYH+T   Y  AK +LF  +
Sbjct: 165 REKDTDYCVMEVSSHALDFGRVKGIPFRSGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRM 224

Query: 238 LPK-------ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
                      S AI+  DD  S+   +        V++ G + +  +    +       
Sbjct: 225 GNDFVQDEKQRSYAILNVDDEASETFQRL---TSAEVITYGIEKECDVRASNIRITAEGT 281

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T++      +    L G+F VYNAL A    +A GI    + + L ++  VPGR E V
Sbjct: 282 EFTLTTFEGTENIRMKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRME-V 340

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +  +   + VDYAHT + LE  L  ++    G +  VFGCGGDRD+ KRP+MGK+    
Sbjct: 341 VSEGQDYLVLVDYAHTPDGLENTLSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKY 400

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +D   VT DNPR+EDP  I  +I+ GI         F    +R  AI+ AIE+ + +DV+
Sbjct: 401 SDHLFVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFEIIVDRRLAIQKAIEVASPKDVV 460


>gi|291549494|emb|CBL25756.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus torques
           L2-14]
          Length = 488

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 149/507 (29%), Positives = 247/507 (48%), Gaps = 39/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         +L+ +L    +Q  +  ++  + +DSR ++ G +FV I G   DGH +
Sbjct: 1   MKL--------DKLLERLDYTVVQGSDSTEVTTLINDSRKVEEGSVFVCISGAVSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
                    +     +A  + +    +  N  ++ V++TR  L+L ++  +G   +   +
Sbjct: 53  AA-------DVAAKGAAAVVVEKDVEVPENVTVIKVEDTRYALALMSAAYFGYPADKMKV 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT GK++    ++ I + +G     IG   + I      +  TTP    + K  + 
Sbjct: 106 IGITGTKGKTTTTYMIKSILEETGHKVGLIGTIEAIIGDKKIPSCNTTPESYTIHKYFAE 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +   G   V +E SS GL  HR  GI    G FTNLGRDHI    H+    Y   K  LF
Sbjct: 166 MVEAGCDCVVMEVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFDDYKRCKGLLF 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
           ++        I   DD Y K+V K    + C++ + G+     +  + V  +     + +
Sbjct: 226 KQC----KLGIANVDDKYFKDVFK---GSTCKIETFGFSPEADLRAENVELVSRPGYLGV 278

Query: 294 SVEG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +       DFD    +PG+F VYN+L A  +C    +   ++ + L+K   V GR E + 
Sbjct: 279 AYHVAGVMDFDVEIDVPGKFSVYNSLTAISVCRHFQVPVEMIKDALKKAK-VKGRIEMIK 337

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             S    + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LA
Sbjct: 338 V-SDDFTLMIDYAHNAMSLESLLTTLKEYNPKRLVCLFGCGGNRSKDRRFEMGEVSGRLA 396

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ I+T DNPR E+P+ I  +I  GI      ++E  +R EAI+ AIE     DV+V+AG
Sbjct: 397 DLTIITSDNPRFEEPQDIINDIKTGIAKTDGKYVEICDRKEAIKYAIEHGEPGDVIVLAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE    +  G K    +  +I+E+L
Sbjct: 457 KGHEDYQEIC-GVKHPMDERVLIKEVL 482


>gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
 gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
          Length = 491

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 145/506 (28%), Positives = 237/506 (46%), Gaps = 39/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+DL+ K        L    ++  +  +++ + +DSR +  G  FV I G   DGH F
Sbjct: 1   MKLKDLLTK--------LEYKVVKGSDTIEVSHLQNDSRKVSDGDAFVCIKGAGFDGHEF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I   +++GA          +      +  +  ++ VD+TR  L+  ++  +G   E ++ 
Sbjct: 53  IRDVVSKGAV-------AVVVMEDVEVDEDVTVVKVDDTRLALACMSADYFGNPAEKLIT 105

Query: 120 VTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           V  T  K        V+ + +  G+ +  IG   TI        + TTP    + +  + 
Sbjct: 106 VGITGTKGKTTTTYMVRSVLESVGIKTGLIGTIETIIGDEVTPAKNTTPESYVVQETFAK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +  QG   V +E SS GL  HR+ G     G FTN+  DHI    H+    Y + K    
Sbjct: 166 MVEQGCKCVVMEVSSQGLMLHRVSGFTFDYGIFTNIEPDHIGPNEHKDFDDYLHCK---- 221

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---V 291
             LL +    I+  D  +   V++      C + + G  G +    +   +  K     V
Sbjct: 222 SMLLKQCKHGIVNMDADFIDRVLE---GHTCDIETYGVNGDYDFKAQDIKLFTKPGCLCV 278

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  ++GK DF     +PG F VYN+L A  +C     D   +   LE +  V GR E + 
Sbjct: 279 SYDLKGKMDFPVEIHVPGMFSVYNSLCAIAICSHFTEDVEKIQTALENVK-VKGRVEIIP 337

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            + R   + +DYAH + SLE +L +++     R++ VFGCGG+R + +R  MG+++  L+
Sbjct: 338 ISKR-FTLMIDYAHNAMSLESLLTSLKQYNPKRLVTVFGCGGNRSKERRFEMGEVSSRLS 396

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D  IVT DNPR E+P  I  +I+ G+      ++   +R +AIR AI      DV+++AG
Sbjct: 397 DFTIVTSDNPRFEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILNAKDGDVIILAG 456

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KGHE    +  G K    +  +I+EI
Sbjct: 457 KGHEDYQEIK-GVKHPMDERVLIKEI 481


>gi|299065603|emb|CBJ36775.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CMR15]
          Length = 514

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 168/510 (32%), Positives = 238/510 (46%), Gaps = 35/510 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQ 62
           I      +++ L        +     ++SD+R ++ G +FVA V GN   + DG   IPQ
Sbjct: 12  IAARLAPVLDWLRAHVPAGAD-----LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119
           AI  G  A++  +   +   +A  R    IL VD   +     A++ Y         ++ 
Sbjct: 67  AIEAGVSAVLAEAHGYVVPANAPAR----ILPVDGLSELAGPLAAQWYAVPGPDALRVIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S + ++ Q   R G     +G   T           TTP  I L  +L+ L 
Sbjct: 123 VTGTNGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLADLH 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   +++E SSHGL+Q R DG +     FTNL +DH+DYH T   Y  AK RLF    
Sbjct: 183 RAGARAIAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--W 240

Query: 239 PKESPAIIYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           P    A+I  DDA    ++        A   G    +   +G    L+      ++   T
Sbjct: 241 PGLRAAVINRDDAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTT 300

Query: 293 ISVEGKDFDFLFPLPG--EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             V+G         P    F V N L   G+ +  G+     L  LEKL  V GR E  G
Sbjct: 301 FDVDGSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFG 360

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               G  + VDYAHT ++LE  L+ +  IT    G++  VFGCGGDRD GKRP MG IA 
Sbjct: 361 -GEDGPLVVVDYAHTPDALEQTLRALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAE 419

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            LA   ++T DNPRSEDP+ I   I  G+      ++  +R  AI  A+   +  DV+VV
Sbjct: 420 RLAQHVVLTSDNPRSEDPQLILDMIADGMEDPYAAVQIEDRAAAILHAVRHADVHDVIVV 479

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           AGKGHE+   +  G K+   D + +R  L 
Sbjct: 480 AGKGHESTQEIA-GRKRPFSDQEHVRLALA 508


>gi|17547568|ref|NP_520970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum GMI1000]
 gi|21362686|sp|Q8XVI2|MURE_RALSO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17429872|emb|CAD16556.1| probable udp-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide
           synthetase) (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 514

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 170/510 (33%), Positives = 237/510 (46%), Gaps = 35/510 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQ 62
           I      +++ L        +     ++SD+R ++ G +FVA V GN   + DG   IPQ
Sbjct: 12  IAARLAPVLDWLRAHVPAGAD-----LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119
           AI  G  A++  +   +    A  R    IL VD   +     A++ Y         ++ 
Sbjct: 67  AIEAGVSAVLAEAHGYVVPADAPAR----ILPVDGLSELAGPLAAQWYAVPGPDALRVIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S + ++ Q   R G     +G   T           TTP  I L  +L+ L 
Sbjct: 123 VTGTNGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLADLH 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   V++E SSHGL+Q R DG +     FTNL +DH+DYH T   Y  AK RLF    
Sbjct: 183 RAGARAVAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--W 240

Query: 239 PKESPAIIYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           P    A+I  DDA    ++        A   G    +   +G    L+      ++   T
Sbjct: 241 PGLRAAVINRDDAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTT 300

Query: 293 ISVEGKDFDFLFPLPG--EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             V+G         P    F V N L   G+ +  G+     L  LEKL  V GR E  G
Sbjct: 301 FDVDGSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFG 360

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               G  + VDYAHT ++LE  L+ +  IT    G++  VFGCGGDRD GKRP MG IA 
Sbjct: 361 -GEDGPLVVVDYAHTPDALEQTLRALAPITGARGGKLWAVFGCGGDRDPGKRPQMGAIAE 419

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            LA   ++T DNPRSEDP+ I   I  G+      I+  +R  AI  A+   +  DV+VV
Sbjct: 420 RLAQHVVLTSDNPRSEDPQLILDMIADGMEDPRLAIQIEDRAAAILHAVRHADVHDVIVV 479

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           AGKGHE+   +  G K+   D + +R  L 
Sbjct: 480 AGKGHESTQEIA-GRKRPFSDQEHVRLALA 508


>gi|260437320|ref|ZP_05791136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810232|gb|EFF69437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 490

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 145/505 (28%), Positives = 237/505 (46%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ K   E++N          +  I  +  DSR   A  +FV + G   DGH +I
Sbjct: 1   MKLSKLLEKLEYEVLNG-------NVDIDIENLVYDSRKAGALDVFVCVTGAVSDGHTYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                +G  AIVV     + +       +  ++   +TR  L+L ++  +    + +  +
Sbjct: 54  SDVAGKGVLAIVVQKDIEVTEE----LKDITLIKTADTRYALALMSAAFFDYPAKKLKTI 109

Query: 121 TGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +   ++ I ++  + +  IG   TI       ++ TTP    + K  S +
Sbjct: 110 GITGTKGKTTTTFMIRDILEKCNIKAGLIGTNETIIGDEHIPSKNTTPESFLIQKYFSQM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G + V +E SS  L  +R  GI    G FTN+  DHI    H + + Y   K RLF+
Sbjct: 170 VEAGCSCVVMEVSSQALMLNRTAGILFDIGVFTNIEPDHIGPNEHASFEEYMECKSRLFK 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
           + +         AD  Y  ++M+      C + + G + K  +  + +  IH    +T S
Sbjct: 230 QCVHGIG----NADSEYFDKIME---GHTCTLETYGIKNKADLKAENIRYIHEGGNITTS 282

Query: 295 VEG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 ++ +    LPGEF VYN+L A  +     +D  L+L+ L     V GR E V  
Sbjct: 283 YNTTGTRELNIKLTLPGEFSVYNSLCAIAVSEHFNVDDKLLLDALYN-TRVAGRVEPVKV 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            S    + +DYAH + SLE +L  +R     RI+ +FGCGG+R + +R  MG+++  +AD
Sbjct: 342 -SDDFIVMIDYAHNAMSLESLLSTLREYNPNRIVCLFGCGGNRSKLRRFEMGEVSGRMAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + I+T DNPR EDP  I  +I  GI      ++   +R EA++ AIE   K D++V+AGK
Sbjct: 401 LTIITSDNPRDEDPVLIMQDIETGIKKTSGSYVMMEDRGEAVKYAIEHGEKGDIIVLAGK 460

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHE    +  G +    D +++++ 
Sbjct: 461 GHEDYQEIK-GVRYHQTDKELVQKA 484


>gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
          Length = 499

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 145/486 (29%), Positives = 227/486 (46%), Gaps = 26/486 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  + SDSR +     FVA  G++ DG  FI QAI +GA +++         F     
Sbjct: 14  VNVRHLVSDSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVIWEEHG----FKWNPT 69

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P L V + R    L A  +YG+  + +  + +TGT+GK+S++ ++ +     G  S 
Sbjct: 70  WSVPNLAVSDLRHQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHWLAKSFGALGRKSA 129

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG          +    TTP  + +   L+    QG     +E SSH L Q R++G+  
Sbjct: 130 LIGTLGNGFPEALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSSHALTQGRVNGVHF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL RDH+D+H   Q+Y  AK RLF+        A++  DD +  E+ ++  +A 
Sbjct: 190 DVALLTNLTRDHLDFHGDMQSYAAAKKRLFD--WASLKYAVLNLDDMFGAELAEQLQDAS 247

Query: 265 CRVLSVGYQGKFIHLKKVCAIHN-----------KQQVTISVEGKDFDFLFPLPGEFQVY 313
             V+  G     + + +   I                + +            L G F   
Sbjct: 248 VEVIGYGLNDDSLKMAERLGIRMVYGSLTQMDAQGLTLQLHTSWGAAALCSRLIGSFNAS 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A  + +A  +        L     V GR + +G       + VDYAHT ++L+ +L
Sbjct: 308 NLLGALAVLLASEVRIDDAARELGLQKAVAGRMQTLGGKGL-PTVVVDYAHTPDALDKVL 366

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +R +T    G++I VFGCGGDRD+GKRP+MG +A  LAD+ I+T DNPRSE+  +I +
Sbjct: 367 TTVREVTESAGGKVICVFGCGGDRDRGKRPMMGTVASKLADVRIITSDNPRSEEAAEIVS 426

Query: 431 EIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           EI  G+ G +    +R +AI  AI      D +++AGKGHE    +  G +    D +I 
Sbjct: 427 EIAAGMQGEYQVIEDRAKAITLAIANARHIDTVLLAGKGHENYQEIK-GVRYPFSDSEIA 485

Query: 490 REILGL 495
              L +
Sbjct: 486 HRALSM 491


>gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 487

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 137/484 (28%), Positives = 224/484 (46%), Gaps = 18/484 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS+      + +I  + +DSR IQ   ++  + G   DGH F+ + + +GA  IV +  
Sbjct: 2   KLSLLFENAPDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAKD 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
                   T+      + V+N  + L++ AS+ YG     +    VTGT+GKS++ S ++
Sbjct: 62  IE------TMHKGVAYIKVENVNRTLNMVASKFYGHPSHQLTVFGVTGTNGKSTITSIIK 115

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +        +    + +         LTTP PI +  ++  +   G+  V++E SSHGL
Sbjct: 116 DVYSHFKPCGYIGTISISYGDVTMPPSLTTPDPILIHHSMKDMVDYGMQAVALEVSSHGL 175

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +  R+  +      FTNL  DH+D+H T + YF AK +LF +L   +  A+I  DD ++K
Sbjct: 176 EMGRVQSVDFDVAVFTNLTYDHLDFHGTLENYFEAKHKLFLQL-KSDGVAVINVDDPFAK 234

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVY 313
            ++         ++S G      +      I  N     +   G+ +     L   + +Y
Sbjct: 235 RMVA---GCKAHIVSYGVTADADYRGDNIHIGTNGSTFDLIHHGETYTITTNLVAMYNIY 291

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A       G+    ++ +L +L  V GR E +    +   + VD+AHT + +E + 
Sbjct: 292 NLLGAIAAMCESGVALKEIVPYLSELTQVDGRMERID-EGQAFNVIVDFAHTPDGMEKVF 350

Query: 374 KNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +   +IT     II VFG  G RD  KR + G+IA    D  I+T+D+PR E+P  I  E
Sbjct: 351 EFANSITPDGNAIIAVFGSAGKRDTKKRKVFGEIADRYCDSIILTEDDPRDENPRDIANE 410

Query: 432 IIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I  GI     I   +R  AIR AIE  N  D +++ GKG E       G +    D    
Sbjct: 411 IKGGIKDTNNIFIEDRYSAIRQAIESANVNDTVLILGKGDEVFMYREFGREPWIGDHIAA 470

Query: 490 REIL 493
           R ++
Sbjct: 471 RHVI 474


>gi|162148956|ref|YP_001603417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545291|ref|YP_002277520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787533|emb|CAP57129.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532968|gb|ACI52905.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 487

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 191/491 (38%), Positives = 262/491 (53%), Gaps = 16/491 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +++    +      +  I  V++DSR +  G +FVAI G + DG        +    A
Sbjct: 5   LSQVLAAAGLSAPPGADPAITGVTADSRRVTPGMLFVAIPGTRADG--------SAFIPA 56

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            + + A ++     T     P++ VD  R+ L+L A+ L G  P++++AVTGT+GK+S  
Sbjct: 57  AIAAGAAAIVAPRGTPAPGVPVIGVDEPRRALALLAAFLAGAQPDHVVAVTGTNGKTSTV 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTHVSV 187
            F++QI       +  IG    I+     +      TP  + LA  L+ ++  GVT V++
Sbjct: 117 DFLRQIWGHQHRRAASIGTLGVIADIDLPDCGPVLTTPDSVGLATLLAAMARGGVTDVAI 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGLDQHRLDG++L A  FTNL RDH+DYH T  AY  AK+RLF+ LLP +      
Sbjct: 177 EASSHGLDQHRLDGLRLSAAGFTNLTRDHLDYHGTLDAYRAAKLRLFDTLLPPDGLMAAN 236

Query: 248 ADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           AD   +    +   A   G  +  VG  G  I L     +   Q + I+  G   D +  
Sbjct: 237 ADMDTATLDALRDIAARRGLDLRLVGEAGDAIRLLGSTPLPEGQHLRIASGGVARDIVLA 296

Query: 306 LPGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           LPG FQ  NA + A    A G D  A  ++ L  L  V GR E       G   YVDYAH
Sbjct: 297 LPGRFQADNA-LLAAALAAPGADGLARAIDLLPALRGVRGRMERAALLPNGAAAYVDYAH 355

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++L  +L  +R   SGR+I VFG GGDRD+GKRP+MG+ A   ADIAIVTDDNPR+ED
Sbjct: 356 TPDALARLLDALRPHASGRLIAVFGAGGDRDRGKRPLMGQEATRRADIAIVTDDNPRTED 415

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           P  IR E++ G PG IE G+R  AI   + ML   DVLVVAGKGHE    +         
Sbjct: 416 PAFIRGEVLAGAPGAIEIGDRARAIAEGLSMLRAGDVLVVAGKGHEQGQTIGTATLP-FD 474

Query: 485 DCDIIREILGL 495
           D  +IR++ G+
Sbjct: 475 DASVIRDLAGV 485


>gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 485

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 208/493 (42%), Positives = 281/493 (56%), Gaps = 20/493 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL   D        ++   +    +I  ++ DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MRLRDLFSDD--------TVMTTEAAATQITGLAVDSRAVKPGELFFALAGAKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                   +AI   +     D   T      ++ VDN R+ L+L AS+ Y + P  I AV
Sbjct: 53  A-------QAIAAGAVAVAGDHLPTDEQGVALVRVDNPRRALALAASKFYPRQPATIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR GL+S  IG    I+   +    LTTP PI L + +  ++S
Sbjct: 106 TGTSGKTSVAAFTRQIWQRQGLASASIGTIGLIAPQRSVYGSLTTPDPIALHRMVDEIAS 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + VTH+++EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T   Y  AK+RLF +L+ 
Sbjct: 166 EDVTHLALEASSHGLDQYRLDGVRIAAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRDLVA 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVE 296
               A+I AD   S EV+  A     R+++VG  G       L+        Q++ +  +
Sbjct: 226 PSGAAVISADHDCSAEVVAAARARKLRLITVGRNGDPGAGIKLRSASIDGFAQRLILEHQ 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+  + L PL GEFQ+ NALVAAGL I  G D+  V E L +L    GR E VG    G 
Sbjct: 286 GRMQNLLLPLVGEFQIENALVAAGLAIGTGSDADSVFEALTQLEGAKGRLELVG-ERNGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I+VDYAH  ++L   L+ +R     ++IVVFG GGDRD GKRP+MG IA   AD  IVT
Sbjct: 345 PIFVDYAHKPDALAKALQALRPYAKRQLIVVFGAGGDRDAGKRPLMGAIAAQQADRVIVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSE+   IRA I+    G  E G+R EAIR AI  L   D L++AGKGHET  IV 
Sbjct: 405 DDNPRSENAAAIRAAILAAAMGADEIGDRAEAIRAAIAALQPGDALLIAGKGHETGQIVG 464

Query: 477 NGEKKMSVDCDII 489
           +     S    ++
Sbjct: 465 DQVLPFSDHQAVV 477


>gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038281|gb|EEG48527.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
          Length = 485

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 140/507 (27%), Positives = 226/507 (44%), Gaps = 37/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+          L     Q  E  ++ +V  DSR +Q G +F+ I G   DGH F
Sbjct: 1   MKLTALL--------EDLEYTCCQGDENAEVTDVVYDSRKVQKGSLFLCIRGAVVDGHTF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +P  + +GA  +VV               +  +++V +TR  ++  ++  +G HP   L 
Sbjct: 53  VPDVVKKGAGVLVVEEKVEA-------PEHVTVILVKDTRYAMACISAAYFG-HPARRLK 104

Query: 120 VTGT---SGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175
             G     GK++    V+ I + +G     IG   + +         TTP    + K   
Sbjct: 105 TIGVTGTKGKTTTTYMVKSILENAGYRVGLIGTIEAIVGDKVIPAVNTTPESYVIQKYFK 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
            ++  G   V +E SS  L  HR  G +   G FTN+  DHI    H+  Q Y   K   
Sbjct: 165 EMADAGCDCVVMEVSSQALMLHRTAGFEFDFGIFTNIEPDHIGPNEHRDFQHYLECK--- 221

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVT 292
              LL +    I+  DD + ++++K  H           +                  + 
Sbjct: 222 -SMLLRQCKVGIVNRDDKHFEQIIK-GHTCALETFGFSEKADLRAEDAKLVSGKGWLGID 279

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V G  +F     +PG+F +YN+L A  +C    +    ++  L ++  V GR E +  
Sbjct: 280 YQVRGMMNFQVEIDIPGKFSIYNSLTAIAICRHFKVSEKDIVNAL-RVAKVKGRIEMIKV 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +     + +DYAH + +LE +L  +R     R++ +FGCGG+R + +R  MG+ +  LAD
Sbjct: 339 SDE-FTLMIDYAHNAMALESLLTTLREYHPHRLVCLFGCGGNRSKLRRYEMGETSGRLAD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + I+T DNPR E P+ I  +I  GI      +IE  +R EAI  AI      D++++AGK
Sbjct: 398 LTIITSDNPRYEKPQAIIDDIKVGISKTDGKYIEIADRKEAIAYAIHHGEPGDIIILAGK 457

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           GHE    +  G+K    +  +I +IL 
Sbjct: 458 GHEDYQEIE-GKKYPMDERVLIADILA 483


>gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila
           RKU-1]
 gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga petrophila RKU-1]
          Length = 490

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 148/495 (29%), Positives = 242/495 (48%), Gaps = 28/495 (5%)

Query: 10  DFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +   +++ L    ++ R   + +I  VS+ S  ++ G +F+   G K D H  IP+ + +
Sbjct: 2   NISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VV     L         + P + V ++R F +  AS  +    +++L    T   
Sbjct: 62  GAVAVVVEKEIDL---------DFPHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTN 112

Query: 127 SSVAS--FVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
               +   +  +    G     +      I   +  + +TTP  I +  A+      G  
Sbjct: 113 GKTTTTMMIYHMLTSLGEKGSVLTTAVKRILGSSYYDDITTPDAITILSAMKENKEGGGK 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ LL  +  
Sbjct: 173 FFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGI 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           AI+        E +    N   R ++ G  +     L  +       +  +         
Sbjct: 232 AILN-------ESLADTFNRKSRKITFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD 361
                G+F  YNA  A      +G D   +   LE    V GRFE V G    G  + VD
Sbjct: 285 FTKAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD 344

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LAD+ I+T D+PR
Sbjct: 345 FAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPR 404

Query: 422 SEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            EDPE+I  ++I GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   I+   
Sbjct: 405 GEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEE 464

Query: 479 EKKMSVDCDIIREIL 493
           +K    D +++ EI+
Sbjct: 465 KKVPFQDREVVEEII 479


>gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
 gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
          Length = 477

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 149/501 (29%), Positives = 236/501 (47%), Gaps = 37/501 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++ K     I+ +     +  + +I  V++DSR I+   +FVAI G + DGH FI
Sbjct: 1   MNLTDILDK-----IDYIDYT--KNNDDEITNVTNDSRKIEKDGVFVAISGMEFDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AIA GA  IVV+   +  D       +   + V + R  L+  ++ +     + +  +
Sbjct: 54  DKAIANGANTIVVTEDVTEID-------DINYIKVKDARIALAQISNVVCDFPSKKLRVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ +S +  I +        IG   T I     +   TTP    + K L   
Sbjct: 107 GVTGTNGKTTTSSMISHILEHLDSPCTNIGTNGTFIGGKKYETPNTTPEICEINKILKLS 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  VE SSHGL  HRLDGI        NL  +H+D+H+  + YF+AKM LFE  
Sbjct: 167 VEEKIDNAVVECSSHGLYLHRLDGIDFDVAVLNNLSMEHMDFHKNMENYFDAKMILFENA 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
             K +      DD Y ++   R  +A     +   + +     + V  I  K    I   
Sbjct: 227 KKKIA----NVDDEYGRKAKARFEDA----YTFSLENESDFKAENVELIDGKMHFEI--- 275

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K+  F+      F VYN++ A      +G +   + + LE    V  RFEFV  N  G 
Sbjct: 276 -KNVKFVLNRFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVK-NDMGI 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +D+AHT  + E I K++      R I V+G  GDR    R  +GKI+ +    ++VT
Sbjct: 334 NIVIDFAHTPKAFENIYKSVPN--DKRKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVT 391

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            D+P+ +  E I  +I+ GI      ++   +R  AI+ AIE+ NK D +++ GKG E  
Sbjct: 392 TDDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEIANKGDFVLLLGKGQENF 451

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +   EK    + + + E+L
Sbjct: 452 IKLKGNEKTPYSEKETVNEVL 472


>gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
 gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
          Length = 495

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 156/490 (31%), Positives = 228/490 (46%), Gaps = 16/490 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+  
Sbjct: 7   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                     ++      + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 67  PPAPQ---GVSVPDGA--IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q   R G+ S   G     +         TTP  + L + L  L   G   V++E SS
Sbjct: 122 LAQAWHRLGVRSATCGTLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD 
Sbjct: 182 HALDQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAH--QDVQAAVINVDDL 239

Query: 252 YSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++    N   RV     G+    +  + +          + +         PL G 
Sbjct: 240 FGLRLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGR 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++L
Sbjct: 300 FNVDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDAL 359

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED + I 
Sbjct: 360 GQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIV 419

Query: 430 AEIIHGI--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G   P  ++   +R  AI  AI + +  DV+++AGKGHE    V  G +    D 
Sbjct: 420 ADILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHERYQEVA-GVRHPFDDT 478

Query: 487 DIIREILGLI 496
           ++   +L  +
Sbjct: 479 EVAMRVLAAM 488


>gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 498

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 151/486 (31%), Positives = 246/486 (50%), Gaps = 33/486 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +W  +       DSR +QAG IF+A+       K +   F   A+ +GA A+V  +  +L
Sbjct: 16  EWMAQPFQGFVLDSRKVQAGQIFIALTSLSQPEKTE--QFAQIALDKGALAVVSETELAL 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRL----YGKHPENILAVTGTSGKSSVASFVQQ 135
            +           +VV N R  +  +  +         P  ILAVTGT+GK++++  V +
Sbjct: 74  ANS----------IVVPNVRHLMGGWQKQFLLATSQVQPARILAVTGTNGKTTISRLVAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +    G S   +G T   I    + +  TT   ++L  AL   + QG    S+EASSHGL
Sbjct: 124 LLMLQGKSCAVMGTTGNGILPNLEASSHTTLDALHLQNALHSYAKQGAEFASIEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL G ++   +++NL RDH+DYH T + Y  AK RLF+   P    A+I  DD ++ 
Sbjct: 184 EQGRLAGSEIEIAAYSNLSRDHLDYHGTLEVYAEAKSRLFQ--FPSLKVAVINLDDEHAG 241

Query: 255 EVMKRAHN--AGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            +++ A N  A  ++L+    Q     +K +         ++     ++    PL G F 
Sbjct: 242 VMIQAAQNNPAQPKILTYSTTQPADYLVKNIQYSLTGANFSLCTAQAEYQVQNPLLGHFN 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N + +  +    G D A V+    +L   PGR + +  ++R     VDYAHT ++L  
Sbjct: 302 IENLVASLIMVEQAGFDLADVVATTAQLKGAPGRMQVIRDDAR--LFVVDYAHTPDALVQ 359

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  ++     ++  VFGCGGDRD+GKRP+M + AL+ AD+ ++T DNPR+E+PE+I A+
Sbjct: 360 VLSTLKRHVEQQLWAVFGCGGDRDRGKRPLMTQAALNGADVVLLTSDNPRTENPEQIFAD 419

Query: 432 IIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +  GI        E  +R EAI+ A++     D++V+AGKGHE    +  G +    D  
Sbjct: 420 MKAGIDFSNRVVHEIHDRREAIKFAVQQAQAGDIVVIAGKGHENYQEIE-GVRHWFDDVV 478

Query: 488 IIREIL 493
            ++  +
Sbjct: 479 EVQSAI 484


>gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
 gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
          Length = 508

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 155/510 (30%), Positives = 248/510 (48%), Gaps = 26/510 (5%)

Query: 1   MKLQDLIYKDFPELINQLSI-----FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MKL       F E+I    +        +    +I  ++ +S+ I+  +IFVAI G K+D
Sbjct: 1   MKL-------FKEIIKGYKVSKEKQLTKECLNIEIRGIAYNSKLIKNKYIFVAIKGLKDD 53

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI--LVVDNTRKFLSLFASRLYGKH 113
           GH +I  AI   A  I+  ++            +T +  + V N R+ L+  +++ + + 
Sbjct: 54  GHKYIESAINNKAAIIIYDNSADKNFIKELEDKHTYVYFIAVKNPRECLAYISAKFFDEP 113

Query: 114 PENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYL 170
            + I  +A+TGT+GK++    ++ + + +   +  IG     I        LTTP  I L
Sbjct: 114 TKKINTIAITGTNGKTTTTYLLKSVLEANKNKTALIGTIKNMIGKTEIKTNLTTPESIDL 173

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                    + V+H+ +EASS  L   R D +      FTN+  DH+DYH   Q Y  AK
Sbjct: 174 ENIFDKALKKEVSHIVMEASSQALAMDRCDYLNYDTAIFTNITEDHLDYHGDMQNYLKAK 233

Query: 231 MRLF---EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           ++LF   +E    +  AI+  D    K++       G ++++ G   K  +  K+ ++++
Sbjct: 234 LKLFSLLKESSKNKKLAIVNIDTDNFKQISNYIKKLGIKMVTYGLNEKADYYGKIISLNS 293

Query: 288 K-QQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           K  +     +GK        + G F + N+L          +D    ++ + K+  V GR
Sbjct: 294 KNTEYEFYSKGKFISKVKLSMLGRFNILNSLSVLAYVSEYKLDIEKSIKAMRKVQ-VAGR 352

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           FE V          VDY+HT +SLE ILK  R +   R+IVVFGCGGDRD+ KRPIM  I
Sbjct: 353 FEIVTKEKHPFIAAVDYSHTPDSLENILKEARKLNPKRVIVVFGCGGDRDRKKRPIMASI 412

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLV 463
           A   +DI+I+T DN R+ED  +I  +I  G     + +  +R EAI  AI+   + D+++
Sbjct: 413 AEKYSDISILTADNQRTEDINQIMNDIEKGFKNKDYKKIIDRKEAIFEAIKEAKENDIVI 472

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I  +       D +I RE L
Sbjct: 473 IAGKGHETYQIFPDKTIH-FDDREIAREAL 501


>gi|293610702|ref|ZP_06693002.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
 gi|292827046|gb|EFF85411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
          Length = 499

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 148/487 (30%), Positives = 228/487 (46%), Gaps = 34/487 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           QW ++     S DSR + +G IF+A+       K     F   A+A GA AI+  +   +
Sbjct: 16  QWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAIISETELGV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQQ 135
            +            V  + R+ +  +  R         P  I+AVTGT+GK++++  V +
Sbjct: 74  AN----------EWVRSDVRQRMGEWQERYLQHIDPVVPVRIIAVTGTNGKTTISRLVAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          +G T   I      +  TT   + L  AL   + QG T  S+EASSHGL
Sbjct: 124 LISSQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF         A+I  DD ++ 
Sbjct: 184 EQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FSSLKVAVINLDDEHAA 241

Query: 255 EVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++  A     +      S+       ++  +          +      F    PL G F
Sbjct: 242 LMINAAKQNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSPQGSFAVQSPLLGHF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N + A       G +   ++  + +L   PGR + +    R     VDYAHT ++L 
Sbjct: 302 NVENLVAALIATEQAGFNLKALVAFVPELIGAPGRMQVIRDGER--LFVVDYAHTPDALI 359

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A
Sbjct: 360 QVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDV 478

Query: 487 DIIREIL 493
             +R  +
Sbjct: 479 VEVRSAI 485


>gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 495

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 183/497 (36%), Positives = 263/497 (52%), Gaps = 22/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+         Q         +  +   + D R +  G +F A  G K +G  FI
Sbjct: 1   MKLNRLL--------EQAGREDRGAEDAIVTGFAIDHRKVAPGTVFGAFAGAKVNGEDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A        + A ++             +  +  RK  +  A++ +   P+ I+AV
Sbjct: 53  DAAVA--------AGAIAVVVRPGAKVEGALQIADEAPRKAFAEIAAQYFTPAPDTIVAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ +  G  +  IG    T    +    LTTP  +     LS L+ 
Sbjct: 105 TGTNGKTSTVEMTRQLWRMLGERAASIGTLGVTTPDESVSTGLTTPDIVTFHANLSGLAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH++ EASSHGLDQ+R  G +++AG+FTN  RDH+DYH++ QAYF AKMRLF+E++ 
Sbjct: 165 EGVTHIAYEASSHGLDQYRNYGARVVAGAFTNFSRDHLDYHESMQAYFEAKMRLFDEVIA 224

Query: 240 KESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
               A+I+AD   ++ +   RA   G R+ +VG QG  I L         Q V I+  G 
Sbjct: 225 DGGTAVIWADGGEWADKARTRAEKRGLRIFTVGPQGDDICLIGQEPSQLGQSVEIARNGD 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G++Q  NAL AA L +A G D A + + + +L  V GR E       G  +
Sbjct: 285 RRTIRLPLIGQYQAANALTAAALALASGADEARLWDAVGRLQPVRGRLERAVITQSGAPV 344

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAHT ++LE  +  +R   +GR+IVVFG GGDRD GKR  MG++A  LAD+ IVTDD
Sbjct: 345 YVDYAHTPDALEAAIAALRPHVNGRLIVVFGAGGDRDTGKRGPMGEVASRLADVVIVTDD 404

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NPR EDP  IR  ++ G      E   R EAI  AIE++ + D++++AGKGHE   I+ +
Sbjct: 405 NPRGEDPADIRRAVMQGAGENTREVAGRREAIAQAIEIIGRDDIVLIAGKGHEEGQIIGS 464

Query: 478 GE---KKMSVDCDIIRE 491
           G+        D  + RE
Sbjct: 465 GDTMRVLPFNDVQVARE 481


>gi|254564002|ref|YP_003071097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
 gi|254271280|emb|CAX27292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
          Length = 492

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 217/473 (45%), Positives = 284/473 (60%), Gaps = 11/473 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF   A      A    +        A + 
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAA-----AAAGAVAVAGEGTRPADLP 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             T  + V + R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI  R G  S  +
Sbjct: 80  EATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASL 139

Query: 148 GPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G    +++   Q   LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG++L A
Sbjct: 140 GTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVELTA 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  AG  
Sbjct: 200 AAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHA 259

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           + + G  G FI L +       Q +T+S   KD+    PL G FQV NALVAAGL +A  
Sbjct: 260 IRTTGRGGDFIRLIEAGTEGFAQSLTLSHASKDYHVRLPLVGGFQVENALVAAGLALATQ 319

Query: 327 I---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
               D A V   LE L  VPGR E +G  + GG   VDYAH   +LE +L  +R   SGR
Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFASGR 378

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           ++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG  E G
Sbjct: 379 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 438

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +R EAIR  +  L   DVLVVAGKGHET  IV         D D +R  +  +
Sbjct: 439 DRAEAIRAGVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAIAEL 490


>gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M23]
 gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23]
 gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 491

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 156/490 (31%), Positives = 228/490 (46%), Gaps = 16/490 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+  
Sbjct: 3   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                     ++      + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 63  PPAPQ---GVSVPDGA--IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 117

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q   R G+ S   G     +         TTP  + L + L  L   G   V++E SS
Sbjct: 118 LAQAWHRLGVRSATCGTLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD 
Sbjct: 178 HALDQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAH--QDVQAAVINVDDL 235

Query: 252 YSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++    N   RV     G+    +  + +          + +         PL G 
Sbjct: 236 FGLRLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGR 295

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++L
Sbjct: 296 FNVDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDAL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED + I 
Sbjct: 356 GQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIV 415

Query: 430 AEIIHGI--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G   P  ++   +R  AI  AI + +  DV+++AGKGHE    V  G +    D 
Sbjct: 416 ADILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHERYQEVA-GVRHPFDDT 474

Query: 487 DIIREILGLI 496
           ++   +L  +
Sbjct: 475 EVAMRVLAAM 484


>gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 509

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 229/473 (48%), Gaps = 18/473 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V+ DSR    G +FVA+ G   DG  F+ QA+  G EA++  +       ++       
Sbjct: 36  AVTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEAVLCEAEA---LPTSVPEQEAR 92

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +L V   R  L      ++       ++ VTGT+GKSSV  ++  + +  G  +  IG  
Sbjct: 93  VLAVPGLRGQLGELGRHVFAVPASLELIGVTGTNGKSSVTHYLAALSEALGTPAAVIGTL 152

Query: 151 STISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   +  RLTTP P+ L  AL  LS++GV  V++E SSH L+Q R+ G +  A  +
Sbjct: 153 GVGRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSHALEQGRVTGCRFHAAVY 212

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH +  AY  AK RLF+    + + A++  DD  S  ++         + +
Sbjct: 213 TNLSRDHLDYHGSMAAYAAAKARLFQHR--ELALAVVNGDDRLSPLMLAGLAKGVRVLAT 270

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +   + +         Q+  I+    + +    L G F + N L+A      +G + 
Sbjct: 271 GTQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFNLDNVLLAIATLYGMGAEL 330

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI----TSGRII 385
             +     +L  VPGR + +        + VDYAHT ++L   L+ +R         ++ 
Sbjct: 331 NALFSAAARLAPVPGRMQRL-VAENAPTVVVDYAHTPDALRNALEALRAHLPSSDGAKLW 389

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFI 440
            VFGCGGDRD+GKRP+M + A  LAD  +++DDNPR E    IR EI  G+         
Sbjct: 390 CVFGCGGDRDRGKRPLMAQAAEALADRLVISDDNPRGEPAAAIRDEIAAGLSTDGRARAE 449

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             G R EAI   ++   + D++++AGKGHET   +  GE+    D DI RE L
Sbjct: 450 CMGGRREAIEWTLDAAGEHDIVLIAGKGHETYQEIA-GERHPFSDIDIAREAL 501


>gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila abortus S26/3]
 gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila abortus S26/3]
          Length = 483

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 144/505 (28%), Positives = 242/505 (47%), Gaps = 35/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++S         ++  ++ DSR++  G IF+A  G   DG+ F 
Sbjct: 1   MNLKELLHNTKAKIYGKISS-------VEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+  GA A+  S           I S+ P L  D         A++ YG   + +  +
Sbjct: 54  HLAVENGAIAVASSIYNPFLPVVQIISSDLPRLEAD--------LAAKYYGHPSQKLCVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  ++ +       +  IG    I  +    +  TTP    L K L+ +
Sbjct: 106 GITGTNGKTTVSHLIKLLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               ++   +E SS GL  +RL  +    G  TNL  DH+D+H + + Y  AK++LF  +
Sbjct: 166 VKSHLSAAVMEVSSIGLAVNRLANVDFDVGVLTNLTLDHLDFHSSFEEYKQAKLKLFS-M 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           LP    A++  D   + + ++         ++ G  Q        V          +  +
Sbjct: 225 LPSSGLAVVNNDLCDAAQFIEATQAQP---ITYGIEQHADYQASHVRFSPFGTDFDLLYK 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+ F    PL G+  +YN L A  +    +  D   ++  +  +    GR E + +    
Sbjct: 282 GETFACYSPLIGQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGRLEPIFSGPCP 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             IY+DYAHT ++L+ + + ++ +    GR+IVVFGCGGDRDQ KR IM ++       A
Sbjct: 342 --IYIDYAHTPDALDNVCQTLQALLPQDGRLIVVFGCGGDRDQSKRKIMAQVVEKY-GFA 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +VT DNPR EDPEKI  EI  G     F  + +R +AI  A+ + + +D+++VAGKGHET
Sbjct: 399 VVTTDNPRGEDPEKIINEICSGFLKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHET 458

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I  +       D +I+   LG++
Sbjct: 459 YQIFKHQTI-AFDDKEIV---LGVL 479


>gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
          Length = 474

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 160/474 (33%), Positives = 247/474 (52%), Gaps = 28/474 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  +  +S++S+ I+A   F AI     +G+ FI  A+ +GA  ++     +      
Sbjct: 9   FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKKN------ 58

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   ++ V++ ++ L       Y K P+ ++AVTGT+GKSSV S++ QI    G  +
Sbjct: 59  ---TTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115

Query: 145 FQIGPTSTISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +   +         +   K    L+  G+ +++ EASSHGLDQ RL
Sbjct: 116 ASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRL 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K+    FT+  +DH+DYH T++ Y  AK++LF + L K+  AI+ +D    K +   
Sbjct: 176 GDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKDY 235

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + L VG  G    + K  +    Q +    + K++DF  P+ G FQ  N L+A 
Sbjct: 236 LDKHKIKYLCVGANG-NCKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAG 294

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                   D + V+  L K+  V GR E V   +    I++DYAHT ++LE  L  ++ I
Sbjct: 295 LSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKNI 350

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++ V+FGCGG+RD  KR +MGKIA  +AD  IVTDDNPR EDP+ IR EII GI 
Sbjct: 351 KAKGGKLSVIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGIV 410

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
              +IE  +R EAI+  I  L K D+L++AGKGHE   I+ + EK    D ++ 
Sbjct: 411 TTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQIIGD-EKIRFDDAEVA 463


>gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
 gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
          Length = 503

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 165/490 (33%), Positives = 236/490 (48%), Gaps = 35/490 (7%)

Query: 30  INEVS------SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           I  +       SDSR I+     +F A  G+  DG  +I +AI  GA+A+V  S+    D
Sbjct: 14  IKGICPNGQLFSDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVVYESS----D 69

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQR 139
           F          L V   +      A   YG      +I+AVTGT+GK+S   ++ Q   R
Sbjct: 70  FEWNPDWKVDHLGVVGLKANAGPIADAFYGSPARSMSIIAVTGTNGKTSTTQWIAQALSR 129

Query: 140 SGLSSFQIGPTST------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            G  +  IG           S  +++   TTP  + L + L+ L S+ V  V++EASS G
Sbjct: 130 LGRKTAVIGTLGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIG 189

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +DQ RL+G+ +    FTN  RDH+DYH    +Y  AK RLF         A++  DDA  
Sbjct: 190 IDQGRLNGLTIDIALFTNFTRDHLDYHHDMASYKAAKRRLFG--WKGLKHAVVNLDDAMG 247

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQVTISVEGKDFDFLFPLPG 308
            E+     +           G    +  + A+      +  +  I     D      L G
Sbjct: 248 IELASELKSKMALT-GYSINGARADIPVLNAVDIRNRTHGDEFRIESPYGDSKIRTQLIG 306

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L   G+ +A GID    ++ L  L   PGR + +G       + +D+AHT ++
Sbjct: 307 RFNVSNVLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQQMG-GKEAPLVVIDFAHTPDA 365

Query: 369 LEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           LE  L  +R +    +G++  +FGCGGDRD GKRP MG+ A   AD+ IVT DNPRSEDP
Sbjct: 366 LEKGLSTLRHVADDRNGKLWCIFGCGGDRDHGKRPEMGEKAES-ADVIIVTSDNPRSEDP 424

Query: 426 EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           +KI  EI+ G+    I+  +R  AI TA++  +K DV+ VAGKGHE    V  G K+   
Sbjct: 425 KKIMEEIVSGMTKDPIQVEDRATAILTAVKQASKNDVIFVAGKGHEAYQEVK-GVKRPFA 483

Query: 485 DCDIIREILG 494
           D D +   L 
Sbjct: 484 DADHVALALA 493


>gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M12]
 gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Xylella fastidiosa M12]
          Length = 491

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 154/490 (31%), Positives = 228/490 (46%), Gaps = 16/490 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+  
Sbjct: 3   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                     ++      + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 63  PPAPQ---GVSVPDGA--IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 117

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q   R G+ S   G     +         TTP  + L + L  L   G   V++E SS
Sbjct: 118 LAQAWHRLGVRSATCGTLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD 
Sbjct: 178 HALDQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QDVQAAVINVDDL 235

Query: 252 YSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++        RV     G+    +  + +          + +         PL G 
Sbjct: 236 FGLRLLHGLAKGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGR 295

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++L
Sbjct: 296 FNVDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDAL 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED + I 
Sbjct: 356 GQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIV 415

Query: 430 AEIIHGI--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G   P  ++   +R  AI  A+ + + +DV+++AGKGHE    V  G +    D 
Sbjct: 416 ADILAGFVRPNLVKVQRDRSAAIAAAVGIASAEDVVLIAGKGHERYQEVA-GVRHPFDDT 474

Query: 487 DIIREILGLI 496
           ++   +L  +
Sbjct: 475 EVAMRVLAAM 484


>gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
 gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
          Length = 488

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 150/476 (31%), Positives = 231/476 (48%), Gaps = 17/476 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            +    +++DSR +QAG +F+A  G   DG  +I QA+    +A   +  +  + F+   
Sbjct: 8   NKSFTSITADSRKVQAGSLFLAYPGLHNDGRQYIGQAV----QAGAAAVVWEQEGFTWNA 63

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                 L V + ++ +   A+  Y      +  + VTGT+GK+SV+ ++ Q     G  +
Sbjct: 64  DWQVSNLAVQDLKQQVGGIAAEFYQNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKT 123

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G           +   TTP  I L   L+    Q    V++E SSHGLDQ R++G+ 
Sbjct: 124 AVLGTIGNGFLGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGRVNGVA 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TNL RDH+DYH+T +AY  AK +LF         AI+  DDA+ K ++   +  
Sbjct: 184 FDVAVLTNLSRDHLDYHETMEAYAAAKQKLFA--WEGLITAIVNTDDAFGKSLVSALNAQ 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L+ G     +    +        + I+          P+ G F  YN L      +
Sbjct: 242 DKPCLTYGLTSADVQGSDLKLHDTGLTMQINTPQGHALLSAPVLGRFNAYNVLAVLATLL 301

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---- 379
           A+ +     LE + K+  V GR +  G       + +DYAHT ++LE +L  ++      
Sbjct: 302 ALKVSLPDSLEAIAKIKPVLGRMQQFG-GGDLPLVVIDYAHTPDALEKVLSTLKEQIDLA 360

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
            +S ++I VFGCGGDRD GKRP+MG IA  LAD   VT DNPRSE+P  I A ++  +  
Sbjct: 361 ASSVKLICVFGCGGDRDAGKRPLMGNIASKLADQVFVTSDNPRSENPAAIIAAVVSEMKA 420

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           G++   +R  AIR AI+  N  D+++VAGKGHE    + +G K    D  I +  L
Sbjct: 421 GYVVDADRANAIRAAIQGANSGDIVLVAGKGHENYQEI-SGVKYPFDDALIAQAAL 475


>gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 153/487 (31%), Positives = 236/487 (48%), Gaps = 34/487 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +++SDSR +  G +F A VG+  DG  +I  A+ +GA A+V  +A     F+   + + P
Sbjct: 23  QLTSDSRRVAPGDVFFAYVGD-ADGRSYIADAVERGAAAVVYEAAG----FTWPAQIDVP 77

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR-SGLSSFQIG 148
            L V + +      A+  YG+  + +L  AVTGT+GK+S A ++     R +G S+  + 
Sbjct: 78  HLAVTDLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSCAYWLGIALSRLAGASTAGVI 137

Query: 149 PTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            T  + SF             TTP  + L ++L  L+   V  +++EASS GL Q R++G
Sbjct: 138 GTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQGRVGALAIEASSIGLAQGRMNG 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + +     TN  RDH+D+H   Q Y +AK +LF+   P    A++  DD   + ++    
Sbjct: 198 MHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQ--WPGLKHAVVNLDDDMGQRLLPLLA 255

Query: 262 NAGCRVLSV---GYQGKFIH------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                V+       QG   H        ++ + H      +            L G F V
Sbjct: 256 ERKVPVIGYAIADEQGGDPHGVPTLRASQLRSSHTGTVFHVDSPFGSGQVKTQLVGRFNV 315

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L   G+ +  G+    V+     L   PGR +  G       I +DYAHT ++L+  
Sbjct: 316 SNVLGIMGVLLTQGVAWDAVVAAAAALSPAPGRMQQFG-GPDVPLIVIDYAHTPDALDKT 374

Query: 373 LKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L  +R +     G++  VFGCGGDRD GKRP MG+IA   AD  ++T DNPRSEDP+ I 
Sbjct: 375 LSTLRQLATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQ-ADQVVLTSDNPRSEDPQAII 433

Query: 430 AEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            +I  G+     +   +R  AI  AI    K DV+++AGKGHE+   +  G+K   +D D
Sbjct: 434 DQIRAGMSRVEPVVLPDRAGAILWAIRHATKADVVLLAGKGHESYQEIA-GKKLPFLDAD 492

Query: 488 IIREILG 494
            +   L 
Sbjct: 493 HVALALA 499


>gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
 gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
          Length = 909

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 149/470 (31%), Positives = 230/470 (48%), Gaps = 25/470 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR IQ G +FVA  G+K DG  F+  AI  GA AI++     +      +   TP
Sbjct: 17  HLRLDSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILIEDNLDI------VVLQTP 70

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +LVV N R+ L   A   YG       ++A+TGT+GK+S A ++ +      +    IG 
Sbjct: 71  VLVVKNLRQKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKALNSINIPCATIGT 130

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             TI  S       LTTP  + + + L+ L ++G+  V++EASS G++Q RLD +++   
Sbjct: 131 LGTILPSGENLGGSLTTPDVLSVHRILATLVARGIEIVTIEASSIGIEQGRLDSVQIKIA 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL  DH+DYH++ Q Y  AK  LF  L      AI   DD     + +++  +    
Sbjct: 191 GFTNLTLDHLDYHKSMQEYEEAKTSLF--LRDGLECAIFNLDDMAGVRMYEKSKASRNLG 248

Query: 268 LSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S+       I   ++          I +       +  L G   +YN L+ AG+   + 
Sbjct: 249 YSILSNSKAVITASELEFHDYGLSFNIQLPEGKSQVITRLAGRHNIYNLLLVAGVLSHLN 308

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNS-------RGGRIYVDYAHTSNSLEMILKN---I 376
           +    ++E +  +  VPGR + V               +YVDY+HT ++L   +K    +
Sbjct: 309 VSVEKIVEIIATIRPVPGRLKLVDIQPFSSSRLINLPHVYVDYSHTPDALANAIKALEVV 368

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           + I  G++  VFGCGGDRD+ KRP+M K+A + AD   +T DNPR+E+   I  +I+ G 
Sbjct: 369 KNIRGGKMACVFGCGGDRDKTKRPVMAKVASECADDIYITSDNPRTENASDILNDILKGA 428

Query: 437 PGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +     +R   I  AI   +K D +++AGKGHE    + NG K    D
Sbjct: 429 KKYSFSHIDRAYTILHAILNASKNDTILIAGKGHEDYQEI-NGVKHHFDD 477



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 144/387 (37%), Gaps = 29/387 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR +++  IF+AI G   DGH F+   I       +VS            ++    
Sbjct: 493 INTDSRTLKSDEIFLAIKGENFDGHDFLET-ID--CIGAIVSKP--------NPKAKVRQ 541

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            +VD+T   +   A     +    ++AV G++GK++    +  I +              
Sbjct: 542 FIVDDTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMIASILKSYAGDGAYFATRGN 601

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +++     +            LS   +  +    +  +  G  ++     K      TN 
Sbjct: 602 LNNHIGVPK----------SLLSLTDNHRIAVFELGMNHPGEIEYLSGLAKPTIAVVTNA 651

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H ++ ++ +A       +F + L  +  AI      YS    +++    C+ ++ G 
Sbjct: 652 QREHQEFMKSVEAVARENGSVF-QSLDADGVAIYPRSSPYSYIWDEQSR--HCKSITFGE 708

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G       +         T+ VE +  +    + G+  + NAL A    ++ GID   +
Sbjct: 709 AGSVN-ATNISYDSEGSSFTVDVESEKLNIHLSILGDHNIQNALAAIATTLSAGIDKKYI 767

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
              L +   V GR +       G  I  D Y    +S+   +  ++T+ + R +V+   G
Sbjct: 768 ESGLAEFKAVKGRLQKHILK-DGTVILDDTYNANPDSVIAAIDILKTLATPRTLVLGDMG 826

Query: 392 GDRDQG--KRPIMGKIALDLADIAIVT 416
                G      +G  A +     ++T
Sbjct: 827 EVGVDGVQMHEEIGTYARENGIDNLLT 853


>gi|306820475|ref|ZP_07454111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551550|gb|EFM39505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 491

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 141/478 (29%), Positives = 239/478 (50%), Gaps = 21/478 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-AT 85
           + +I ++  DS+      +F A++G   DGH +I  A + GA   V+S    LQ+     
Sbjct: 20  DLEIEDIVYDSKKAVEKTLFTALIGMTSDGHKYIENAYSSGARVFVISREEFLQEKENVE 79

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           I  N+  ++V++TR  L+  ++  +G   + +  + +TGT GK++V+ +++ +   S +S
Sbjct: 80  IIQNSTFILVEDTRVALATMSAEFFGHPSKELTIVGITGTKGKTTVSGYIKSVLDNSDIS 139

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG      ++       TTP    + K +  +   GV  +++E SS G+  +R+ GI
Sbjct: 140 CGVIGTNGIYFANQYFKTVNTTPESYEIQKYMKKMVDNGVKVLAMEVSSGGIMMNRVHGI 199

Query: 203 KLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           +     FTNL  DHI    H T + Y   K  LF         +II  DD  SK +++++
Sbjct: 200 EFDYAIFTNLSHDHIGEKEHPTFEHYRECKSMLFA----MSKYSIINIDDENSKVMIEKS 255

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +   +  S+     F   K +    N   +    E  +  ++    G+F VYNAL    
Sbjct: 256 KD--YKTYSIDSSSDFQ-AKDIIYPSNISDMRTYFEVNEKKYVVNSFGKFGVYNALCTIM 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           LC  +G+    +   LEK H V GR + +       ++ +DYAH   SLE +L+ ++ + 
Sbjct: 313 LCEQLGLSYQSIYTGLEKAH-VKGRLQVID-GFTDIKVIIDYAHNEVSLENVLQTVKELK 370

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
             R+IV+FG  G R Q +R  +  +A    D+ IVT DNP +E+P+KI  EI+  I    
Sbjct: 371 PKRLIVLFGSVGTRSQNRREELATVASKYCDVIIVTSDNPDTENPQKIIDEIVSHISQDK 430

Query: 441 EK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +K      +R  AI+ AIEM  K DV+V+AGKGHE   ++ NG ++   D + +++ +
Sbjct: 431 KKYTYCYADRAVAIQKAIEMSQKGDVIVLAGKGHEEYQLI-NGVREHFSDEEEVKKYI 487


>gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 483

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 139/503 (27%), Positives = 233/503 (46%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++       R  ++  ++ DSR +  G IF+A  G + DG+ F 
Sbjct: 1   MDLKELLHGVQAKIYGKV-------RPLEVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+A GA AI  S              +   ++  N  +  +  +++ Y      +  +
Sbjct: 54  ADALANGAIAIASS--------LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++ +       S  +G    I       +  TTP+P  L K L+ +
Sbjct: 106 GVTGTNGKTTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q    V +E SS GL   R+          TN+  DH+D+H T +AY  AK +LF  L
Sbjct: 166 VRQNRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFEAYVAAKAKLFS-L 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +P     +I  D  Y+ + ++ A      V++ G +         +    +  + T+   
Sbjct: 225 VPPSGMVVINTDSPYASQCIESAKAP---VITYGIESAADYRATDIQLSSSGTKYTLVYG 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +         G++ VYN L A     A +  D   +LE +      PGR + V      
Sbjct: 282 DQKIACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPVLMGPCP 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             +Y+DYAHT ++L+ +L  +  +    GR+IVVFGCGGDRD+ KR +M ++       A
Sbjct: 342 --VYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQVVERY-GFA 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +VT DNPRSE PE I  EI  G     +  + +R +AI  A+ + + +D++++AGKGHE 
Sbjct: 399 VVTSDNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKGHEA 458

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I  +       D   + E+L 
Sbjct: 459 YQIFKHQTV-AFDDKQTVCEVLA 480


>gi|166368093|ref|YP_001660366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
 gi|166090466|dbj|BAG05174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
          Length = 497

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 165/500 (33%), Positives = 240/500 (48%), Gaps = 16/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+    P +     I      E +I  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLQELLT-TIPLV---SPISSPIALETEITGISTNSHACQPGDLFIGLPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  GA     +              +  ++VV +     +  A++ Y    +   ++
Sbjct: 57  RSALETGAV---AAIISPAAAAKFPPPEDASVMVVADLVTAAAAIAAKFYHYPAQTLKLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++G+ +   G   T    F +    TTP    L  +L+  
Sbjct: 114 GVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKA 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G     +E SSH L Q R+ G       FTNL RDH+DYH   + YF AK +LF   
Sbjct: 174 VSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPD 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   AII  DDAY + +            SV       + K +       Q  +    
Sbjct: 234 YLQ-GKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQPTGVQGVMVTPQ 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGG 356
            +  F  PL G++ + N L A    +  G+D   V+  + +   VPGR E V     +  
Sbjct: 293 GEIAFASPLVGQYNLANLLAAVAAVLECGVDLGKVIGQIPQFSGVPGRMERVSIAPDQDI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R   SGR+I VFGCGGDRD+ KRP+MGKIA +LAD+AIVT
Sbjct: 353 SVIVDYAHTPDSLENVLKASRPFISGRMICVFGCGGDRDRTKRPLMGKIAAELADLAIVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E PE+I  +I+ GIP  I      +R  AI TAI+     D +++AGKGHE   
Sbjct: 413 SDNPRTESPERILQDIVAGIPSEITVQVISDRALAIDTAIQAAQPGDGVIIAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 473 ILGT-EKIHFDDREQARAAL 491


>gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 494

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 140/486 (28%), Positives = 227/486 (46%), Gaps = 22/486 (4%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +L + + I  +  R + ++N++++DSR  +AG IFVA  G   D H F    + QG 
Sbjct: 2   NAQQLFDHILIKQVIGRLDIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGC 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + +VV+ A  LQ        +   ++V +T +  S     LYG   + +  + VTGT+GK
Sbjct: 62  QIVVVNRALELQ-------GDVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S+A+ +  I ++ G  S  +G     I+        TTP  + L K +      G   +
Sbjct: 115 TSIATMIHHIYRKLGKGSAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAM 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKES 242
           ++E SSHGL   RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L ++ 
Sbjct: 175 TLEVSSHGLSLGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDK 234

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFD 301
             II ADD +S  +           L+ G + +   +                     + 
Sbjct: 235 YVIINADDPFSTYLKS---VTPYESLTYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYP 291

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G F + N + A       G     V + +  L  V GR E V   S    + +D
Sbjct: 292 VRSPYIGRFNIANLMAAMLGVWVKGAPLETVTKVVADLEPVEGRLE-VLDPSLPIDLIID 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT++ +  ++  +      ++I + G  G+RD  K P MG++A   AD  I T DNP 
Sbjct: 351 YAHTADGMAKLIDAVEPFVKQKLIFLVGMAGERDLTKTPEMGRVASR-ADYVIFTPDNPA 409

Query: 422 SEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           ++DP+ + AE+  G     ++E  +R E IR AIE+    D +V+A KG E   I+    
Sbjct: 410 NDDPKMLTAELAKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHV 469

Query: 480 KKMSVD 485
           K    D
Sbjct: 470 KVPHRD 475


>gi|325954321|ref|YP_004237981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
 gi|323436939|gb|ADX67403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
          Length = 488

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 152/496 (30%), Positives = 244/496 (49%), Gaps = 27/496 (5%)

Query: 9   KDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           K    ++  LSI           + E+  DSR  + G +FVAI G + DGH +I Q    
Sbjct: 2   KQLTTILTNLSIIKTIGDAEGVLVGELIFDSRKAKKGDVFVAIKGTQTDGHSYIEQVTEI 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           G   IV              + N   ++V++    L + AS  Y    +N+  + +TGT+
Sbjct: 62  GVSVIVCE------VLPEIQKENIVYVLVEDASIALGVMASNYYDNPTKNLQLVGITGTN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S + ++  + G +S  +      +       + TTP  + L +       +G  
Sbjct: 116 GKTTTTSLLYELFTKLGYASVLVSTIQIVVDGDIIPTQNTTPDIVTLNRIFRQAVDKGCE 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SSHG+ Q+R+ G+     +FTN+  DH+DYH T Q Y  AK + F+EL P  + 
Sbjct: 176 YAFMEVSSHGIVQNRIAGLYFRVAAFTNITHDHLDYHITFQNYIQAKKKFFDEL-PASTK 234

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   + ++    N          +G      K+        + ++   ++F   
Sbjct: 235 ALVNLDDRNGRVML---QNTVASKHFFTLKGDAEFKGKILESRFDGML-LNFNQQEFW-- 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+F  YN L+  G+   +G +   VL  L  L  V GRF+   T      I VDYA
Sbjct: 289 TNLIGQFNAYNLLLVYGIAHLLGQEDTEVLTILSVLGSVEGRFQTFHTQGD-RVIIVDYA 347

Query: 364 HTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++LE +L  I  I +   ++I V GCGGDRD+ KRP M  IA   +D+AI T DNPR
Sbjct: 348 HTPDALENVLDTIGGIRTKNEQLITVVGCGGDRDKTKRPEMADIAARKSDLAIFTSDNPR 407

Query: 422 SEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           +E+PE I A++  G+        ++  +R EAI+TA++M  K D++++AGKGHET   + 
Sbjct: 408 TENPEAILADMEAGVEPQFYDKTLKITDRKEAIKTALKMSQKHDIILIAGKGHETYQEI- 466

Query: 477 NGEKKMSVDCDIIREI 492
           NG +    D ++ +E+
Sbjct: 467 NGVRNHFSDVEVAKEL 482


>gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
 gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
          Length = 478

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 237/501 (47%), Gaps = 37/501 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++ K     I+ +     +  + +I  V++DSR I+ G +FVAI G + DGH FI
Sbjct: 1   MNLTDILDK-----IDYIDYT--KNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AIA G   IVV+   S  +           + V + R  L+  ++ +     + +  +
Sbjct: 54  DKAIANGTNTIVVTEDVSQNE-------GINYIKVKDARIALAQISNVVCDFPSKKLRVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ AS +  I +        IG   T I+    +   TTP    + K L   
Sbjct: 107 GVTGTNGKTTTASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLS 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  VE SSHGL  HRLDGI      F NL  +H+D+H+  + YF+AKM LFE  
Sbjct: 167 VEKKIDNAVVECSSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFENA 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
             K +      DD Y ++   R  +A     +   + +     + V  I  K    I   
Sbjct: 227 KKKIA----NVDDEYGRKAKARFEDA----YTFSLENESDFKAENVELIDGKMHFEI--- 275

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K+  F+      F VYNA+ A      +G +   + + LE    V  RFEFV  N  G 
Sbjct: 276 -KNVKFVLNRFALFDVYNAVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVK-NDMGI 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +D+AHT  + E I K++      R I V+G  GDR +  R  +GKI+ +    ++VT
Sbjct: 334 NIVIDFAHTPKAFENIYKSVPN--DKRKIAVYGMSGDRTREIRHEVGKISAENNVFSVVT 391

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            D+P+ +  E I  +I+ GI      ++   +R  AI+ AIEM N  D +++ GKG E  
Sbjct: 392 TDDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEMANDGDFVLLLGKGQENF 451

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +   EK    + + + E+L
Sbjct: 452 IKLKGNEKTPYSEKETVNEVL 472


>gi|163854034|ref|YP_001642077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
 gi|163665639|gb|ABY33006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
          Length = 492

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 213/477 (44%), Positives = 283/477 (59%), Gaps = 19/477 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF          A   ++         T  
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLF---------AAAAAAAGAVAVAGEGTRP 75

Query: 88  SNTPI----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            + P     + V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI  R G  
Sbjct: 76  DDLPEATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRE 135

Query: 144 SFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G    +++   +    TTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG+
Sbjct: 136 SASLGTVGIVTNRGAEYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGV 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +L A +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  
Sbjct: 196 ELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADA 255

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           AG  + + G  G FI L +       Q +T++  GKD+    PL G FQV NALVAAGL 
Sbjct: 256 AGHAIRTTGRGGDFIRLVEAGTEGFAQSLTLTHAGKDYRVRLPLVGGFQVENALVAAGLA 315

Query: 323 IAI---GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           +A      D A V   LE L  VPGR E +G  + GG   VDYAH   +LE +L  +R  
Sbjct: 316 LATPAGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPF 374

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            SGR++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG 
Sbjct: 375 ASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGA 434

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            E G+R EAIR  +  L   DVLVVAGKGHET  IV         D D +R  +  +
Sbjct: 435 EEIGDRAEAIRAGVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAIAEL 490


>gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 556

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 161/550 (29%), Positives = 257/550 (46%), Gaps = 60/550 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L       L  ++S        R+++ V++DSR      +FVA+ G + DGH +I
Sbjct: 1   MQLAELFRAAELPLPAKIS---RAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYI 57

Query: 61  PQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
             A+A+G   I+         Q  +         L   +TR+ L    + L G    ++L
Sbjct: 58  ADAVARGCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLL 117

Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
              +TGT+GK++ A  ++ +    G     IG  +            TTP P  L   L+
Sbjct: 118 LIGITGTNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLA 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   GVTHV +E SSH L Q R+ G++     FTNL R+H+DYH   ++YF AK RLFE
Sbjct: 178 EMRQAGVTHVVMEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFE 237

Query: 236 ELLPKESPAIIYADD-----------------------AYSKEVMKR-------AHNAGC 265
           + L   + A++ A +                        ++  + ++       A     
Sbjct: 238 QHLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAP 297

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R+   G+    + L    +  N  +  ++    +++   PL G+F + N L  A   +A+
Sbjct: 298 RLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 357

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    +   L      PGR E    + RG +++VDYAHT  +LE +L+ +R   S R+I
Sbjct: 358 EMSPEAIAAALAVAPPPPGRLERF-VDRRGMKVFVDYAHTPAALEQVLRTLRPH-SRRLI 415

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V+FGCGGDRD+GKR  MG+IA  LADI ++T DNPR+E+P  I A I  G+ G   +  R
Sbjct: 416 VIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCR 475

Query: 446 IEAI---------------RTAIEM----LNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           +EA+               R AI       +  DV+V+ GKGHET   + + + +   D 
Sbjct: 476 LEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHETYQQIGS-QCRYFDDR 534

Query: 487 DIIREILGLI 496
             + E L ++
Sbjct: 535 REVAEGLAVV 544


>gi|148259079|ref|YP_001233206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|326402230|ref|YP_004282311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
 gi|146400760|gb|ABQ29287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|325049091|dbj|BAJ79429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
          Length = 481

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 192/473 (40%), Positives = 265/473 (56%), Gaps = 16/473 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E   + +++DSR ++ G IF A+ G + DG  FI        +A+   +A  L      
Sbjct: 17  PETVFSGITADSRAVRKGMIFAALPGARADGRDFIA-------QAVAQGAAAVLAPSGTR 69

Query: 86  IRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                P   ++     R+ L+  A+ L G  PE IL VTGT+GK+S   F++Q+   SG 
Sbjct: 70  WPPGVPPRPLIEDPEPRRRLAEIAATLAGPLPETILGVTGTNGKTSTVDFIRQMAVASGR 129

Query: 143 SSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G    I+  FA    LTTP P+ L+  L+ L + G+  V++EASSHGLDQ RL G
Sbjct: 130 PAASLGTLGLIAPGFAPGASLTTPDPVTLSDILAALRAAGIGTVALEASSHGLDQFRLHG 189

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD--DAYSKEVMKR 259
           ++L AG F+NL RDH+DYH    +Y  AK+RLF++LL   +PA+  AD        +   
Sbjct: 190 LRLAAGGFSNLTRDHLDYHGDMASYRRAKLRLFQDLLLPGAPAVAMADLEPDTLAALRDI 249

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A      + +VG  G    L+ + A  + Q +TI+  G   +   PLPG FQV NAL+AA
Sbjct: 250 AQARRLDLATVGAGGDLFDLRGIIATPSSQVLTIACGGVSREIELPLPGRFQVDNALLAA 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           GL  A G+     L+ L  L  V GR E       G   YVDYAHT ++LE +L  +R  
Sbjct: 310 GLARAAGVS--DPLDRLPGLAPVRGRLERAAVLPNGAAAYVDYAHTPDALERLLMALRPH 367

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +GR+++VFG GGDRD+GKR +MG +A  LAD+AIVTDDNPRSEDP  IRA I+   PG 
Sbjct: 368 AAGRLVLVFGAGGDRDRGKRKLMGDVAARLADVAIVTDDNPRSEDPASIRAAILAACPGA 427

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            E G+R  AI   ++ L   DVL VAGKGHE+  IV +       D  +IRE+
Sbjct: 428 REIGDRRAAIAAGLDALRAGDVLAVAGKGHESGQIVGDAVLP-FDDAAVIREL 479


>gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
 gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
          Length = 480

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 158/477 (33%), Positives = 252/477 (52%), Gaps = 23/477 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++ K+  +S +S+ ++   +F  + G   D + FI  A+ Q    ++  +       SA
Sbjct: 9   FKQYKVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQAVALVITDNKK-----SA 63

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           TI     I+ V++ +  L       Y K P+N++AVTGT+GKSSV S++ Q     G  +
Sbjct: 64  TIDK---IIYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +          L      K    L+   + +++ EASSHGL+Q RL
Sbjct: 121 ASIGTIGVEIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQARL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             IK+    FT+  +DH+DYH T++ Y  AK++LF E L +   AI+ +D    + +   
Sbjct: 181 GEIKVNIACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIEEIEFIKDY 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             N   + ++VG +G  + + K+      Q ++ +   ++  F   + G FQ  N L+AA
Sbjct: 241 LLNHNIKFITVGKKGD-VQITKINGSLKGQNISFAFNNRECSFNTSIIGSFQASNLLIAA 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                IG D   ++E L ++  V GR E +        I+VDY+HT ++LE  L  ++ I
Sbjct: 300 LSIHYIGCDFNKIVEILTQVKPVKGRMERI----DNTNIFVDYSHTPDALEKALTELKNI 355

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                ++IVVFGCGG+RD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEII  I 
Sbjct: 356 KLRDSKLIVVFGCGGNRDKTKRSLMGQIAAKLADTVIITDDNPRHEDPKLIRAEIISCIE 415

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              ++E  NR EAI+  I  L + D+L++AGKGHE   I+ + +K    D +I+ ++
Sbjct: 416 KADYMEIANREEAIKYGINNLKQDDILLIAGKGHENYQIIGD-KKLPFDDAEIVGKL 471


>gi|302671350|ref|YP_003831310.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
 gi|302395823|gb|ADL34728.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
          Length = 495

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 137/506 (27%), Positives = 230/506 (45%), Gaps = 28/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+ +    +    S   +   + +I +V +D+R I  G +F+ I G   DGH   
Sbjct: 1   MILSKLLEELKCTVTAGNSAEILDADKVEIKDVVNDNRKISEGSLFICIKGANFDGHSCA 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  + A AIVV     L            ++ V+NTR  ++  ++  +      +  +
Sbjct: 61  MEAANKKAAAIVVEHDVELPG-----DCKIAVIRVENTRYAMAFISAAYFDHPARKLKTI 115

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        ++ + + +G     IG    I          TTP    L + ++ +
Sbjct: 116 GITGTKGKTTTTYLIRNMLENAGHKVGLIGTIEVIIGEEHIHAENTTPESFALQEYMARM 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G   V +E SS GL  HR  G     G FTN+  DHI    H+  + Y + K  LF+
Sbjct: 176 VEAGCDSVVMEVSSQGLMLHRTQGFIFDIGIFTNIEPDHIGPNEHKDFEDYMHCKGLLFK 235

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
           +        I   DD ++ ++++      C+  + G+ +G  +    +  I    ++ + 
Sbjct: 236 QC----RIGICNGDDIHTDDILE---GHTCKAYTYGFGEGLDLRAINLAYIRKPGELGVF 288

Query: 295 VEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + +   +       PG+F VYNAL A  +   +G     +   L+    V GR E V  
Sbjct: 289 FDTEGLINMHAEIRTPGKFSVYNALCAIAVAQELGCTPEEIAPALKDAK-VKGRIEMVKV 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +     + +DYAH + +L+ +L  +R     R+I VFGCGG+R + +R  MG+++   +D
Sbjct: 348 SDE-FTLMIDYAHNAMALKSLLTTLRDYHPNRLISVFGCGGNRSKLRRFEMGEVSGKYSD 406

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             I+T DNPR E+PE I  +I  G+      +I+  +R EAIR AI+   + D++V+AGK
Sbjct: 407 FTIITSDNPRYEEPEDIMNDIETGMKKTDGKYIKITDRKEAIRYAIDHGEQGDIIVLAGK 466

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    +  II+EIL
Sbjct: 467 GHEDYQEIK-GVKYPMDERVIIQEIL 491


>gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces bingchenggensis BCW-1]
          Length = 544

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 154/511 (30%), Positives = 237/511 (46%), Gaps = 32/511 (6%)

Query: 11  FPELINQLSI-------FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
             EL +QL I        P    E  +  ++ DSR ++ G ++ A+ G +  G  F  QA
Sbjct: 35  LRELADQLGIDAPKAPDAPKAPEEAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQA 94

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVT 121
              GA A++     +         +  P+LVV+N R  +   A+ +YG+   ++L   +T
Sbjct: 95  ADLGAVAVLTDPGGA----DRAAATGLPVLVVENPRGRMGALAATIYGEPGRDLLQIGIT 150

Query: 122 GTSGKSSVASFVQQICQRS-----GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175
           GTSGK++ A  V+   + +     G  +  IG   S I      +  TTP    L    +
Sbjct: 151 GTSGKTTTAYLVEGGLKAAAAKGDGSLTGLIGTVESRIGDERIKSERTTPEATDLQALFA 210

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  +GV  +++E SSH L   R+DG       FTNL  +H+++H   + YF AK +LF 
Sbjct: 211 VMRERGVGSLAMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSDMEDYFQAKAQLFT 270

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-IS 294
           +   +   A+I  DD Y K ++  +        + G+         V       + T + 
Sbjct: 271 K--ARSRAAVINLDDEYGKRLVDLSEVPVTTFSAEGHPDAHWRAADVTVGPLGSEFTILG 328

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             G+      PLPG F V N L A       GID     + +  +  VPGR E V    +
Sbjct: 329 PNGESVTAAAPLPGAFNVANTLAAVVALAVAGIDPQTAADGVAAVPGVPGRLERVDA-GQ 387

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                VDYAH ++++E +L+ +R +T GR+  V GCGGDRDQ KR  MG      AD A+
Sbjct: 388 PYLAVVDYAHKTDAVESVLRALRKVTEGRLHAVLGCGGDRDQQKRGPMGAAVARYADTAV 447

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR------IEAIRTAIEMLNKQDVLVVAG 466
           +T DNPRSEDP  I A ++ G       E+G+        +AI  A+      D ++VAG
Sbjct: 448 LTSDNPRSEDPLAILATMLAGAAEVPAHERGDVLVDADRAQAIAAAVARAEPGDTVLVAG 507

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           KGHE    +  G  +   D  ++RE + L +
Sbjct: 508 KGHELGQDIA-GVVRPFDDRQVLREAIELAI 537


>gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
 gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
          Length = 476

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 180/481 (37%), Positives = 257/481 (53%), Gaps = 12/481 (2%)

Query: 15  INQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +NQL      +  +  +   + D R +  G IF A  G + +G  FI  A+  GA A+V 
Sbjct: 3   LNQLDQSITGEGGDALVTGFAIDHRKVAPGTIFGAFQGARVNGEDFIADAVRSGAIAVVT 62

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +++            +  D  R   +  A+  +   P   +AVTGT+GK+S     
Sbjct: 63  RPGVTVE--------GAVHIASDEPRAAFAQLAAAFFAPFPATAVAVTGTNGKTSTVEMT 114

Query: 134 QQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +Q+ + +G  +  IG    T +       LTTP  +     ++ L+ +GVTH++ EASSH
Sbjct: 115 RQLWRMAGHHAASIGTLGVTTADERTYTGLTTPDVVTFLSNVAGLAREGVTHLAFEASSH 174

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q+R +G+++ A +FTNL RDH+DYH    AY  AKMRLF E+L     A+++ADD  
Sbjct: 175 GLTQYRTEGLEVSAAAFTNLSRDHLDYHGDMGAYLAAKMRLFSEVLSPTGTAVVWADDVQ 234

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQ 311
           S  V+  A   G R+++VG +G  + L +       Q + I  E G       PL G +Q
Sbjct: 235 SGRVIDLARARGNRLMTVGTRGSTLKLVERHPTLLGQGLVIEDEHGTIHKVQLPLIGAYQ 294

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NALV+AGL +A G D    L +L +L  V GR E       G  +YVDYAHT ++LE 
Sbjct: 295 AANALVSAGLVLATGGDVTTTLANLSRLQPVRGRLERAAIARSGAPVYVDYAHTPDALEA 354

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  ++    GR+IVVFG GGDRD GKR  MG++A   AD  IVTDDNPR+EDP  IR +
Sbjct: 355 AIAALKPHAGGRLIVVFGAGGDRDPGKREAMGQVASMQADRVIVTDDNPRTEDPAAIRTQ 414

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           ++ G  G IE G+R EAI  AI     QD++++AGKGHE   IV +       D  + RE
Sbjct: 415 VMRGATGAIEIGDRREAIAAAIAEAGGQDIVLIAGKGHEQGQIVGDLVLP-FDDVAVARE 473

Query: 492 I 492
            
Sbjct: 474 C 474


>gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
 gi|153793974|gb|EDN76394.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
          Length = 491

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 152/497 (30%), Positives = 245/497 (49%), Gaps = 31/497 (6%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+ +L    +Q  ++ +I  + +DSR ++ G +FV I G   DGH ++     +GA+
Sbjct: 3   LKQLLERLEYEVVQGSDKIEITTLINDSRKVEEGSVFVCISGAVSDGHQYVADVAKKGAK 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A++V              +   ++ V++TR  L+L ++  +G   E +  + +TGT GK+
Sbjct: 63  AVIVQQDVEA-------PAGMTVIRVEDTRYALALASAAYFGYPAEKLHIIGITGTKGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +  G     IG   + I         TTP    + +  + +   G   V 
Sbjct: 116 TTTYMIKSILEGVGHKVGLIGTIEAIIGEEVIPAANTTPESYTIHQYFAKMVEAGCDSVV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS GL  HR  GI    G FTNLG+DHI    H+  + Y   K  LF++        
Sbjct: 176 MEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKGLLFQQC----RVG 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG---KDF 300
           I  ADD Y K+V K   NA C+V + G+ +   +  + V  +     + ++       DF
Sbjct: 232 IANADDRYFKDVFK---NATCKVETFGFCKEADLRAEDVNLVSRPGYLGVAYHVAGVMDF 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    +PG F VYN+L A  +C    +    +   L+K   V GR E V  +     + +
Sbjct: 289 DVEIDVPGTFSVYNSLTAIAVCRHFDVPKEHIQAALKKAK-VKGRIEMVKVSDE-FTLMI 346

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNP
Sbjct: 347 DYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTIITSDNP 406

Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R E+P+ I  +I  GI      ++E  +R EAIR AI      +V+V+AGKGHE    + 
Sbjct: 407 RFEEPQAIIDDIKVGIEKTDGAYVEIIDRKEAIRYAITHGQTGEVIVLAGKGHEDYQEIE 466

Query: 477 NGEKKMSVDCDIIREIL 493
            G K    +  +I EIL
Sbjct: 467 -GVKHPMDERVLIAEIL 482


>gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
          Length = 515

 Score =  345 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 253/509 (49%), Gaps = 30/509 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL++L+    P + N+L    +      I  +  DSR++  G +F+AI G+K DG L+I 
Sbjct: 15  KLRELV---IPWVFNELISSAL-----VITALQLDSRNVTVGNLFIAIKGHKTDGRLYIK 66

Query: 62  QAIAQGAEAIVVSSAYS----LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            AI  GA A+++ S  +     Q+    + S  PI+      + +S  A R YG    N+
Sbjct: 67  HAIKNGAVAVLLESTNNDNFLAQNIVNNVSSCVPIINFYKLNQAVSSIAGRFYGHPSRNL 126

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKA 173
             + VTGT+GK++++  +    +  G  S  +G      I S    +  TT S I   + 
Sbjct: 127 NLIGVTGTNGKTTISHLLANWVELLGEKSAVMGTIGYGMIGSMCV-SNCTTFSAIDTQRI 185

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+     G+  V++E SSHGLDQ+R+D +      F+NL  DH+DYH     Y  AK RL
Sbjct: 186 LNQFIQSGIKFVAMEVSSHGLDQYRVDALYFDVAIFSNLTSDHLDYHGDINKYIMAKWRL 245

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQ 289
           F EL       +I  DD    E +    N+    +       ++G++I L K        
Sbjct: 246 FSELCVTN--YVINVDDYIGYEWLSYLPNSVAVTIQDNLPKFWKGEWIKLVKANYFVYGT 303

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            V       +      L GE  V N L+A G  + +G    ++L   ++L  + GR E  
Sbjct: 304 DVFFHSSWGNGIIRSQLLGECNVSNLLLALGALLVLGYPLMVLLSIADQLKPICGRLEKF 363

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            + ++   I VDYAHT ++LE IL+    +    G++  VFGCGG+RD+ KR  MG +A 
Sbjct: 364 KSFNK-PTIIVDYAHTPDALEKILRFLGAQLCKKGKLWCVFGCGGNRDKLKRSRMGIVAE 422

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +D  ++TDDNPR+E+ + I  +II  I          NR++AI TAI   +  D +++
Sbjct: 423 RYSDYVVITDDNPRTENSQSIIDDIILKIKHSEKITIIKNRVQAIETAICQADSNDFILI 482

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHE+  IV N   K S D DI+R IL
Sbjct: 483 AGKGHESYQIVGNDYLKYS-DQDIVRNIL 510


>gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
 gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
          Length = 498

 Score =  345 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 147/486 (30%), Positives = 239/486 (49%), Gaps = 33/486 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
            W ++       DSR ++ G IF+A+       K     F  +A+ QGA A++  +   +
Sbjct: 16  DWMKQSFQGFELDSRKVKPGQIFIALTSLSQPEKT--VQFAQKALEQGALAVISETEPDV 73

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFAS-RLYGKHP---ENILAVTGTSGKSSVASFVQQ 135
                      P LVV + R  +  +    L    P     ILAVTGT+GK++++  V +
Sbjct: 74  S----------PNLVVSDVRHLMGQWQKQYLQATQPVTAARILAVTGTNGKTTISRLVAE 123

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                G +   +G T   I    + +  TT   + L  AL   +  G    S+EASSHGL
Sbjct: 124 FIMLQGKACAVMGTTGNGILPNLEASSHTTLDALQLQNALHGYAQAGAEFASIEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL+G  +    ++NL RDH+DYH T QAY  AK  LF         A+I  DD +++
Sbjct: 184 EQGRLNGCDIEIAGYSNLSRDHLDYHGTLQAYAEAKSGLFR--FESLKVAVINIDDEHAQ 241

Query: 255 EVMKRAHN--AGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            ++  A N  A  ++L+    Q     ++ +    +     +     ++    PL G F 
Sbjct: 242 IMLDAAKNNPAQPKILTYSTTQKADYQVQDIQYSISGATFKLKTASAEYIVNSPLLGHFN 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N + +  +    G +   ++  + +L   PGR + +    R     VDYAHT ++L  
Sbjct: 302 IENLVASLIMAEQAGFELESLIATVPQLKGAPGRMQVLRDGER--LFVVDYAHTPDALTQ 359

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  ++   S  +  VFGCGGDRD+GKRP+M + ALD +DIA++T DNPR+EDP +I A+
Sbjct: 360 VLVTLKRHVSQNLWAVFGCGGDRDRGKRPLMTQAALDGSDIAVLTSDNPRTEDPAQIFAD 419

Query: 432 IIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           + +GI      + E  +R EAI+ A++     D++V+AGKGHE    + +G +    D  
Sbjct: 420 MKNGIDFSGKTYHEIHDRREAIKFAVKHAQAGDIVVIAGKGHENYQEI-DGVRHWFDDVI 478

Query: 488 IIREIL 493
            ++  +
Sbjct: 479 EVQAAI 484


>gi|226953732|ref|ZP_03824196.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|294651781|ref|ZP_06729079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226835520|gb|EEH67903.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|292822338|gb|EFF81243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 499

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 142/487 (29%), Positives = 229/487 (47%), Gaps = 34/487 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           W  +     S DSR ++ G IF+A+       K     F   A+  GA A++  +   + 
Sbjct: 17  WYTQPFQGFSLDSRKVEKGQIFIALSSYSQPEKT--RQFAQNALDAGALAVISEATLGVT 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQI 136
           +            V  + R  +  +  +         P   +AVTGT+GK++++  + ++
Sbjct: 75  N----------EWVCPDVRYQMGEWQKQYLQAVDPVQPICGVAVTGTNGKTTISRLIAEL 124

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G     +G T   I      +  TT   + L  AL   +  G   V++EASSHGL+
Sbjct: 125 ISSQGKGCAVMGTTGNGILPNLTPSTHTTLDALQLQHALHDYAKLGARFVALEASSHGLE 184

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q RL+G  L    ++NL RDH+DYH T +AY  AK RLF+         +I  DDAY++ 
Sbjct: 185 QGRLNGCDLEIAVYSNLSRDHLDYHGTLEAYAEAKARLFK--FTTLKAVVINLDDAYAQL 242

Query: 256 VMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           ++  A     +      S+       H+  +    +    T+      +    PL G F 
Sbjct: 243 MLDAAKANPSQPKILTYSLTQAAADYHIDALEYRLSGANFTLLAPTGSYAVHSPLLGHFN 302

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L +       G D A ++E + +L   PGR + +   +R     VDYAHT ++L  
Sbjct: 303 VENLLASLIAAECAGFDLADLVEFVPQLQGAPGRMQVIQDANR--LFVVDYAHTPDALIQ 360

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  ++   +G++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+ED  +I A+
Sbjct: 361 VLTTLKRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDHANPVILTSDNPRTEDQAQIFAD 420

Query: 432 IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +  G+        E  +R EAI+  +      D++V+AGKGHE    + +G +    D  
Sbjct: 421 MKQGMNFTEHLMHEIHDRREAIKFVVAQAQAGDIVVIAGKGHENYQEI-DGVRHWFDDVV 479

Query: 488 IIREILG 494
            ++  + 
Sbjct: 480 EVQSAIA 486


>gi|229490463|ref|ZP_04384304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
 gi|229322753|gb|EEN88533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
          Length = 544

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 149/499 (29%), Positives = 236/499 (47%), Gaps = 22/499 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  + +   Q  E  +  V   ++ I    +F A+ G +  G  F   A+ +GA AI+  
Sbjct: 37  LEWVGLPGSQSSEVVVKGVDLRAQGIVTDDLFAALPGARTHGAQFAVDALGRGATAILTD 96

Query: 75  SAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA-- 130
            A    ++        + P+LV  N R  L   ++ +YG+  E +  V  T         
Sbjct: 97  EAGLELIEAADKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTTTS 156

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++     +G     +G   T I      + LTTP    L    + ++ QG+  V +E 
Sbjct: 157 YLLEAAIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEV 216

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYA 248
           SSH L   R+DGI+   G+FTNL +DH+D+H+  + YF AK RLF+ E   +   A++  
Sbjct: 217 SSHALALGRVDGIRFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVVCV 276

Query: 249 DDAYSKEVMKRAH----NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFL 303
           DD + + + + A     +A   V +   + ++       A    Q   +   +G+ +   
Sbjct: 277 DDVWGRRMAELAATDESDAVTTVSTSTAEAEWTVGAVEVAEDGSQTFELVGPDGQSWPVS 336

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG + V NA +A  +  A G+D    +  L  +  VPGR + +    +     VDYA
Sbjct: 337 LRLPGRYNVANAALALTVSFAAGLDPDAAVRALGTVD-VPGRVQRID-RGQSFLAVVDYA 394

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +LE ++  +R    GR+ VV G GGDRD GKR +MG+     AD+ IVTDDNPR+E
Sbjct: 395 HKPAALEAVIATLRNQVPGRVAVVVGAGGDRDAGKRALMGEAGARGADLLIVTDDNPRTE 454

Query: 424 DPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DP KIRA ++ G             E G+R  AI  A+      DV++VAGKGHE    +
Sbjct: 455 DPAKIRASVMQGAMDVPESERGEVREVGDRAAAIEQAVRWAQPGDVVLVAGKGHEVGQEI 514

Query: 476 TNGEKKMSVDCDIIREILG 494
            +G K    D +++ E++G
Sbjct: 515 -DGVKHPFDDREVLGEMIG 532


>gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 494

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 219/468 (46%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++++ ++++DSR  + G IFVA  G   D H F    + QG   IVV+    L       
Sbjct: 20  DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQDLN------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  SL A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 74  -GDVTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +     +G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S+ +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSEYL---A 249

Query: 261 HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V + G           V       +         +    P  G+F + N + A 
Sbjct: 250 SVTPYEVFTYGIDNDAQFRAINVEESLQGVKFEFDTPFGSYQVESPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     ++E ++ L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGATFEEIIEAVKSLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVKPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
              ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHS 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            ++E  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYVEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 501

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 159/508 (31%), Positives = 252/508 (49%), Gaps = 37/508 (7%)

Query: 1   MK--LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK  L+D++ K     ++ L I      +  I  +S  S+ IQ   IFVA  G   DGH 
Sbjct: 1   MKKRLKDILKK-----VDVLKIVGKNTSKL-IERISMYSKIIQKNMIFVAKKGKTTDGHE 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-- 116
           FI  AI  GA  IV           ++I      ++V ++   L + +S  Y    +   
Sbjct: 55  FITNAIQNGAHTIVCEK------IPSSIHKKITYVLVPDSMNALGIISSNFYDHPTKKIK 108

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ +TGT+GK+SVA+ + Q+  + G  +  I      I S       TTP+ I + K L+
Sbjct: 109 LIGITGTNGKTSVATILHQLFSKMGEKNILISTMGIQILSKKYPTTHTTPNIIEINKYLN 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G  +  +E SSHG+ Q R+ G+    G FTN+  DH+DYH++   Y + K + F 
Sbjct: 169 LSIRKGCKYAFMEVSSHGIHQKRIAGLLFQGGVFTNITHDHLDYHESFDHYLSTK-KFFF 227

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
           E L K++ A+I +DD  S +++K   +   +    G  +     ++ +    +  Q+ I 
Sbjct: 228 ENLSKKAFALINSDDENSYKIIK---DILSKTYFYGLKKNANFKIQILKESIHGSQLLID 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G F VYN L      I +G     +L+ ++ +  + GRFE   +NS 
Sbjct: 285 ----GHKIFTKLIGTFNVYNLLAGYATAILLGKKKDNILKKIKNIKPIRGRFEQFISNS- 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G R+ VDYAH  + L+ +L  ++ I +  G++I V GCGG+RD  KR +MGKI  +  D+
Sbjct: 340 GIRVIVDYAHNPDGLKTVLNTLKKIKNDDGKLICVIGCGGNRDIKKRSLMGKIVYETCDV 399

Query: 413 AIVTDDNPRSEDPEKIRAE-------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +I T DNPR ED EKI  +       I       +   NR +AI TAI++  K+D++++A
Sbjct: 400 SIFTSDNPREEDREKILVDMKNFKSSIYKDKESILTFVNRKKAIETAIQIAKKKDIILIA 459

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHET   +  G +    D  I + +L
Sbjct: 460 GKGHETYQEIK-GIRFPFNDMKIAQYLL 486


>gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 494

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 140/486 (28%), Positives = 227/486 (46%), Gaps = 22/486 (4%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +L + + I  +  R + ++N++++DSR  +AG IFVA  G   D H F    + QG 
Sbjct: 2   NAQQLFDHILIKQVIGRLDIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGC 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + +VV+ A  LQ        +   ++V +T +  S     LYG   + +  + VTGT+GK
Sbjct: 62  QIVVVNRALELQ-------GDVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S+A+ +  I ++ G  S  +G     I+        TTP  + L K +      G   +
Sbjct: 115 TSIATMIHHIYRKLGKGSAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAM 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKES 242
           ++E SSHGL   RL G++     F+NL +DH+D+H T +AY +AK  LF +L   L ++ 
Sbjct: 175 TLEVSSHGLSLGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDK 234

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFD 301
             II ADD +S  +           L+ G + +   +                     + 
Sbjct: 235 YVIINADDPFSTYLKS---VTPYESLTYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYP 291

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G F + N + A       G     V + +  L  V GR E V   S    + +D
Sbjct: 292 VRSPYIGRFNIANLMAAMLGVWVKGAPLETVTKVVADLEPVEGRLE-VLDPSLPIDLIID 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT++ +  ++  +      ++I + G  G+RD  K P MG++A   AD  I T DNP 
Sbjct: 351 YAHTADGMAKLIDAVEPFVKQKLIFLVGMAGERDLTKTPEMGRVASR-ADYVIFTPDNPA 409

Query: 422 SEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           ++DP+ + AE+  G     ++E  +R E IR AIE+    D +V+A KG E   I+    
Sbjct: 410 NDDPKMLTAELAKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHI 469

Query: 480 KKMSVD 485
           K    D
Sbjct: 470 KVPHRD 475


>gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
          Length = 476

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 145/473 (30%), Positives = 241/473 (50%), Gaps = 21/473 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E    ++S +S+ I+ G IFVA++GN  DGH +IP AI  GA+ I+             
Sbjct: 19  EEDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYIPSAIENGAKMIIAERD------DYP 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +  +++V N R  L   +S  Y   P+N L +   +G +   +    I +    +S 
Sbjct: 73  YPKDITVVLVKNLRDNLGYISSNFY-NFPQNKLKIIAVTGTNGKTTTTY-ILESIFKNSA 130

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +IG T   I     + + TTP  + L K +     + V +  +E SSH L Q R+  ++ 
Sbjct: 131 RIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDKNVEYFLMEVSSHALCQGRVKMLEF 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +  FTNL +DH+D+H+T + YF AK  +   L P  +  II  DD Y   ++  + +  
Sbjct: 191 DSAIFTNLTQDHLDFHETLEKYFEAKASIINHLKP-NARLIINKDDKYCNRLLNVSDSFS 249

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +      +   I+ + +       +V IS + K + F   L GE+ + N L A      
Sbjct: 250 LK------EVATINGEVLEYTLKGMKVRISKDDKKYIFTTKLMGEYNLQNLLGAILSAYN 303

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GID   ++  ++ ++ + GRFE +  N +   + VDYAHT++ LE ILK +  +   R+
Sbjct: 304 LGIDLDEIINSIQNINSIAGRFEIID-NDKDVMVVVDYAHTADGLENILKTLSIMKKNRL 362

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441
           + +FG GGDRD+ KR  M + A   +D+  +T DNPR+EDPE I  ++  G+     + +
Sbjct: 363 VTLFGAGGDRDKTKRAKMAQAACKYSDLIFLTSDNPRTEDPEMILNDVEKGMNSSIPYFK 422

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +R  AI+ +I+ L K D+L++AGKGHE   I+   EK    D ++ ++ LG
Sbjct: 423 ICDREMAIKNSIQTLQKNDILLIAGKGHEDYQIIGR-EKIHFDDREMAKKYLG 474


>gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 552

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 161/550 (29%), Positives = 257/550 (46%), Gaps = 60/550 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L       L  ++S        R+++ V++DSR      +FVA+ G + DGH +I
Sbjct: 1   MQLAELFRAAELPLPAKIS---RAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYI 57

Query: 61  PQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
             A+A+G   I+         Q  +         L   +TR+ L    + L G    ++L
Sbjct: 58  ADAVARGCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLL 117

Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
              +TGT+GK++ A  ++ +    G     IG  +            TTP P  L   L+
Sbjct: 118 LIGITGTNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLA 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   GVTHV +E SSH L Q R+ G++     FTNL R+H+DYH   ++YF AK RLFE
Sbjct: 178 EMRQAGVTHVVMEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFE 237

Query: 236 ELLPKESPAIIYADD-----------------------AYSKEVMKR-------AHNAGC 265
           + L   + A++ A +                        ++  + ++       A     
Sbjct: 238 QHLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAP 297

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R+   G+    + L    +  N  +  ++    +++   PL G+F + N L  A   +A+
Sbjct: 298 RLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 357

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    +   L      PGR E    + RG +++VDYAHT  +LE +L+ +R   S R+I
Sbjct: 358 EMSPEAIAAALAVAPPPPGRLERF-VDRRGMKVFVDYAHTPAALEQVLRTLRPH-SRRLI 415

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V+FGCGGDRD+GKR  MG+IA  LADI ++T DNPR+E+P  I A I  G+ G   +  R
Sbjct: 416 VIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCR 475

Query: 446 IEAI---------------RTAIEM----LNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           +EA+               R AI       +  DV+V+ GKGHET   + + + +   D 
Sbjct: 476 LEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHETYQQIGS-QCRYFDDR 534

Query: 487 DIIREILGLI 496
             + E L ++
Sbjct: 535 REVAEGLAVV 544


>gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
 gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
          Length = 474

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 159/474 (33%), Positives = 247/474 (52%), Gaps = 28/474 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  +  +S++S+ I+A   F AI     +G+ FI  A+ +GA  ++     +      
Sbjct: 9   FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKKN------ 58

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   ++ V++ ++ L       Y K P+ ++AVTGT+GKSSV S++ QI    G  +
Sbjct: 59  ---TTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115

Query: 145 FQIGPTSTISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +   +         +   K    L+  G+ +++ EASSHGLDQ RL
Sbjct: 116 ASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRL 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K+    FT+  +DH+DYH T++ Y  AK++LF + L K+  AI+ +D    K +   
Sbjct: 176 GDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKDY 235

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + L VG  G    + K  +    Q +    + K++DF  P+ G FQ  N L+A 
Sbjct: 236 LDKHKIKYLCVGANG-NCKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAG 294

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                   D + V+  L K+  V GR E V   +    I++DYAHT ++LE  L  ++ I
Sbjct: 295 PSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKNI 350

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++ ++FGCGG+RD  KR +MGKIA  +AD  IVTDDNPR EDP+ IR EII GI 
Sbjct: 351 KAKGGKLSIIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGIV 410

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
              +IE  +R EAI+  I  L K D+L++AGKGHE   I+ + EK    D ++ 
Sbjct: 411 TTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQIIGD-EKIRFDDAEVA 463


>gi|313637026|gb|EFS02597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL S4-171]
          Length = 440

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 213/447 (47%), Gaps = 26/447 (5%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
           F  +A   GA A+V      +           P++ V +T++ +++ A+  YG   +   
Sbjct: 1   FAKKAEELGAVAVVAEKPVDVT---------IPVIYVRDTKRAMAMLANYFYGSPTQALK 51

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ +TGT+GK++V+  V+QI + SG  +  IG     I     + + TTP  + L +   
Sbjct: 52  LVGITGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFR 111

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  +GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK  LF 
Sbjct: 112 EMLLRGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFA 171

Query: 236 ELLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
           +L           A++ ADD  S   ++        V++ G  +        +    +  
Sbjct: 172 QLGNSYHASNPKIAVLNADDEES---VRMQTATAAHVITFGIKENADFRATNIEITSHGS 228

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              ++     F     + G F VYN L A     A+ I     +  +E +  V GRFE V
Sbjct: 229 TFNLTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELV 288

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDY+HT + L  +L+ I    + R+ VV GCGGDRD+GKRP M KIA+  
Sbjct: 289 NA-GQDFPVIVDYSHTPDGLLNVLQTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQY 347

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   + T DNPRSE+P  I  ++I G+P    ++   NR +AI+ AI      DV+++AG
Sbjct: 348 ATNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAG 407

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE   I+ + E     D    R  +
Sbjct: 408 KGHEDYQIIGD-EVINFDDRLEARLAI 433


>gi|78185154|ref|YP_377589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
 gi|78169448|gb|ABB26545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
          Length = 502

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 231/501 (46%), Gaps = 19/501 (3%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+  + + P       +I  V+SDSR    G +FV + G + DG LF  QA+     
Sbjct: 5   LDELLRDVGLTPPAGGTNPQIEAVTSDSRLAGPGSLFVGLPGERVDGGLFWRQALN---A 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPEN--ILAVTGTSGK 126
               +        S     +  +LVV       L   AS  + +  E   +L VTGT+GK
Sbjct: 62  GAAAAVIGPAAAASDPPGDHDQVLVVSEPVASTLGELASSFWNRPSERMALLGVTGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ +    G S+   G         +     TT     L   LS  +S G    
Sbjct: 122 TTTTYLIEHLALACGRSTALFGTLVNRWPGHSVTATHTTAFADRLQAQLSEAASAGSQLA 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH L QHR+ G +     FTNL +DH+DYH + Q YF AK  LF E L +  PA 
Sbjct: 182 AMEISSHALAQHRVAGCRFAGAVFTNLTQDHLDYHLSMQDYFEAKALLFSEALLQAGPAR 241

Query: 246 --IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD +  ++ +R  +   R  S       + ++ +          +     +  F 
Sbjct: 242 AVVNGDDPWGAKLAERLGSQCWRS-SFTDSTAELRMEDLSMTSRGVSGRLISPLGEGAFQ 300

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIY 359
            PL G F + N L A G+ +   +    +L  +     VPGR E V            + 
Sbjct: 301 SPLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAMTNSLPTVL 360

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE  L   R    G++I VFGCGGDRD+GKRP M  IA  LAD  +VT DN
Sbjct: 361 VDYAHTPDGLENALAAARPFAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDN 420

Query: 420 PRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR+EDP++I  +++ GIP  ++   + +R  AI   I   +  D+++VAGKGHE   I+ 
Sbjct: 421 PRTEDPQRILEDVLQGIPDGVDRVVESDRGVAIAQTIAEADAADLVLVAGKGHEDYQILG 480

Query: 477 NGEKKMSVDCDIIREILGLIL 497
             EK    D +  ++ L L L
Sbjct: 481 T-EKVHFDDREEAQKALRLRL 500


>gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 486

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 143/484 (29%), Positives = 229/484 (47%), Gaps = 18/484 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS       + +I  +  DSR  +A  ++  + G   DGH FI   IA+GA+ IV S  
Sbjct: 2   KLSQIFENAPDIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIEDVIAKGAKCIVHSKP 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQ 134
                    ++     + V+N  + L+  AS  YG       +  VTGT+GKS++ S ++
Sbjct: 62  VE------HMKKGIAYIQVENVNRTLNRVASLFYGHPSRNMKVFGVTGTNGKSTITSIIK 115

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +        +    + +         LTTP  I + K +  +   G+  V++E SSHGL
Sbjct: 116 DVYSHFAPCGYIGTISISYGEVTLPPSLTTPDAILIHKTMKDMVDAGMQAVALEVSSHGL 175

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +  R+  +      F+NL  DH+D+H T + YF AK +LF  L  K+  A++ ADDAY  
Sbjct: 176 ELGRVQSVDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTNL-KKDGVAVLNADDAYVD 234

Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++   A     RV++ G         + +       + T+  +G+ ++ +  L   + +Y
Sbjct: 235 QL---ADATDARVVTYGIDHHASYQAENIRIEKTGSRFTLVHDGEHYEVVTNLVALYNIY 291

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A       GI  A  L +L ++  + GR E +    +   + VD+AHT + +E + 
Sbjct: 292 NLLGAVAAMAESGIPIAKQLPYLNEIRQIEGRMERID-EGQLFNVIVDFAHTPDGMEKVF 350

Query: 374 KNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +  + IT     II VFG  G RD  KR + G+IA    D  I+T+D+PR EDP +I  E
Sbjct: 351 EYAKDITEEGHSIIAVFGSAGKRDTKKRKVFGEIASRYCDSIILTEDDPRDEDPREIANE 410

Query: 432 IIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I  GI     I   +R  AIR AIE  N +D +++ GKG E       G +    D ++ 
Sbjct: 411 IKSGISDTNNIFIEDRYAAIRQAIESANMKDTVLILGKGDEVFMYREFGREPWMGDHNVA 470

Query: 490 REIL 493
           R  +
Sbjct: 471 RHCI 474


>gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA2]
 gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL044PA1]
 gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA3]
          Length = 499

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/492 (30%), Positives = 232/492 (47%), Gaps = 23/492 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L           I  ++ DSR ++ G ++V + G    G  F   A   GA A++  
Sbjct: 1   MASLDGCRADGNGPAITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTD 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
              +       + +  P+++VD+ R  +++ A+R++G   +   +  +TGT+GK++ A  
Sbjct: 61  EHGAK----LAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTAFL 116

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V+   + +G     IG         +       +TTP    L    + +  +G + V +E
Sbjct: 117 VEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVME 176

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG      +FTNLGRDH+D+H+T   YF AK RLF   L +     I  
Sbjct: 177 VSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGV--INV 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD   +++++R    G R ++   +Q     +    A        ++    +      LP
Sbjct: 235 DDPRGRQLIERMQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELSLP 294

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF V NA +A  +    G+    V + L     VPGR E V   +      VD+AHT  
Sbjct: 295 GEFNVRNAAMALAMLETAGLAFDDVADGLCSAQ-VPGRMERVDLGADAPTALVDFAHTPQ 353

Query: 368 SLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++   L   R++   GR+I V G GGDRD  KR  MG++A + ADI ++TDDNPR+EDP 
Sbjct: 354 AIASALDAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTEDPA 413

Query: 427 KIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            IRA ++ G           ++ G R EAI  A+ M    DV+ V GKGHET   + + E
Sbjct: 414 VIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHETGQHIGS-E 472

Query: 480 KKMSVDCDIIRE 491
                D ++IR 
Sbjct: 473 VLPFDDREVIRN 484


>gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 158/509 (31%), Positives = 242/509 (47%), Gaps = 34/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DLI       +              +   V+ D+  +  G +F A+ G+   G   
Sbjct: 1   MKLSDLIAGQDHHALRGTPDR------TDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHA 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           +  A+A+GA A++V               +  +L V + RK  ++ ASR +G+     ++
Sbjct: 55  VAPAVARGAVAVLVDQQAPTL---PAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-------SPIYL 170
           +A+TGT+GK+SV+   + + + +     ++G   T  S   D  +  P           L
Sbjct: 112 IAITGTNGKTSVSYMTESVLRLA--ERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDL 169

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK
Sbjct: 170 QYLLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAK 229

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
           +RLF+ L      A++ ADD     + K    A   V +    G        +    +  
Sbjct: 230 LRLFQGL---CRCAVVNADDPVGAGIRKLMPGA---VTTYALDGDADYRASDLTVDASGS 283

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T+  +G+ +    P PG F V NAL     C  +G   A ++  LE++  +PGRFE +
Sbjct: 284 RFTLHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERL 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +  G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   
Sbjct: 344 QISG-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTH 402

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +D+ ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      D++++A
Sbjct: 403 SDLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIA 462

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKG E    V  GE     D   +RE++G
Sbjct: 463 GKGSEPHQSVR-GELLPFSDMATVRELIG 490


>gi|254515246|ref|ZP_05127307.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
 gi|219677489|gb|EED33854.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
          Length = 491

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 163/488 (33%), Positives = 244/488 (50%), Gaps = 20/488 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    P L+  L+    +     I  +  DSR ++ G +F+A+ G+ +DG  F+ QA A 
Sbjct: 8   LQHSLPILLEGLA---AEVPALDIAALRLDSRQVEKGDLFIALRGHAQDGREFLAQAAAS 64

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A +V     L+          P++V+ N R  L   A R + +     +I AVTGT+
Sbjct: 65  GAAAALVEDELPLRLSP------LPMVVIPNLRHRLCEIAGRFFREPSREMHIAAVTGTN 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++V+    ++ +  G     IG    ++      +  TTP  I L + L+  + Q V 
Sbjct: 119 GKTTVSQLFARLVRSVGYDCGVIGTLGASLDGGVHSSVHTTPDSIALQEILAGWAGQAVP 178

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VS+E SSH L Q R++ + +    FTNL RDH+DYH   Q+Y  AK RLF         
Sbjct: 179 FVSMEVSSHALHQGRVNTLDIDTAIFTNLTRDHLDYHGDMQSYGEAKARLFA--FESLRT 236

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFD 301
           AI+ ADD +S+ + +R    G  VL  G +     + L  +       +        +  
Sbjct: 237 AILNADDPFSRHLAQRVPT-GVSVLRYGIEDSTAEVRLSHLKLSRAGLRFRFESPWGEAT 295

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G+F   N L A    +  G+    V+E +E L  VPGR E +     G  + +D
Sbjct: 296 LTCPLLGKFNAVNLLAALTAALQAGLPFKAVMEAVESLASVPGRMEPLRVAG-GPLVVID 354

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +L  +R    G +I VFGCGGDRD+GKRP+M +     AD A++T DNPR
Sbjct: 355 YAHTPDALRQVLLTLREQCQGSLIAVFGCGGDRDRGKRPLMAEAVSATADRAVITSDNPR 414

Query: 422 SEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           SE+P  I A+I   + G ++   +R EAIR AIE    +D +++AGKGHE   IV   E+
Sbjct: 415 SEEPLAIIADIQASMKGDYLVCADRAEAIRLAIESAGAKDCVLIAGKGHEDYQIV-GQER 473

Query: 481 KMSVDCDI 488
               D  +
Sbjct: 474 LPFSDTAV 481


>gi|145223570|ref|YP_001134248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315443917|ref|YP_004076796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
 gi|145216056|gb|ABP45460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315262220|gb|ADT98961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
          Length = 512

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 166/506 (32%), Positives = 251/506 (49%), Gaps = 20/506 (3%)

Query: 1   MKLQD-----LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           M L+      +      +L+           + ++  V+   +H QAG +F A+ G+K  
Sbjct: 1   MNLRPSHPVGMPLGALADLVCAEPADAGPVPDLQVTGVTLRGQHAQAGDLFAALPGSKAH 60

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  +   A+ +GA A++  +   + + +A      PILV    R  L   A+ ++G+  E
Sbjct: 61  GARYAADAVERGAVAVLTDADG-VSEIAAHGGPAVPILVHPAPRSVLGEVAAAVFGRPSE 119

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
              ++ VTGTSGK++    V+   + +G  +  IG     I   AQ   LTTP    L  
Sbjct: 120 HLRVIGVTGTSGKTTTTYLVEAGLRSAGRVAGLIGTVGVRIDGRAQPGGLTTPEAPDLQA 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+ +  QGV  V +E SSH L   R+DG+    G FTNL RDH+D+H T Q YF AK R
Sbjct: 180 LLAAMLEQGVDTVVMEVSSHALTLGRVDGVSFAVGGFTNLSRDHLDFHPTMQDYFEAKAR 239

Query: 233 LFEELLP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           L +   P   + ++I  DD + + +  RA       ++         +++V A+    Q 
Sbjct: 240 LVDPTSPTHAARSVICVDDEWGRAMAARADAPVTVSVT---GDADWWVQEVRALDGGVQD 296

Query: 292 TISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++V+  G        LPG + V N L+A  L  A+ +        L     VPGR E V
Sbjct: 297 FLAVDPAGVHHALEIGLPGGYNVANCLLAVALLDAVDVSPEQAAPGLRD-ATVPGRLEAV 355

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +     VDYAH   +L  +L+ +R   +GR+ VVFG GGDRDQGKR  MG++A +L
Sbjct: 356 D-RGQPFLALVDYAHKPGALAAVLQTLREQCAGRLAVVFGAGGDRDQGKREPMGRVAAEL 414

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD+ +VTDDNPR EDP  IRA I+ G  G   +E G+R  AI  A++   + D++++AGK
Sbjct: 415 ADLVVVTDDNPRGEDPAVIRAAILRGASGAQTVEIGDRRAAIVHAVQWAREGDIVLIAGK 474

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE     + G  +   D D +   L
Sbjct: 475 GHEAGQT-SQGRTRPFDDRDELAAAL 499


>gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6578]
          Length = 496

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 230/482 (47%), Gaps = 24/482 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  ++ DSR +++G +F A+ G   DGH F+  A+ +GA A+V            + 
Sbjct: 15  DPPVRLLAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVVHERELP------SY 68

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
           R     L V N R+ LS  ++  YG   +++  + VTGT GKSS   F+ Q+ + SG+  
Sbjct: 69  REGVVYLRVKNARRALSAASAVFYGHPSQDLEVIGVTGTDGKSSTTYFIYQLLRASGVKV 128

Query: 145 FQIGP--TSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--QHRL 199
             I     ST         R +TP   ++  AL+ +   G TH  VEA+SHGL     RL
Sbjct: 129 GCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATSHGLSPRTARL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + ++   G  TN+  +H+++H + + Y   K RLF  L P+E  A++  DD  S  + +R
Sbjct: 189 EDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGL-PEEGKAVLNLDDPSSGFLAER 247

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              AG     +G +       +V          +    +  +   P PG F V N L A 
Sbjct: 248 TR-AGVWGYGLGAREGARLWAEVREESLAGSRCLVHGRETLEVWVPFPGRFNVENVLAAV 306

Query: 320 GLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               A    +    L H+  L  VPGR E V    +   + VDYAHT  + E +L  +R 
Sbjct: 307 LGAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQPFLVLVDYAHTPGAFEKLLPFVRR 365

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              GR+IVVFG  G+RD+ KRP+ G++A   A++ ++TD++PR ED   I  EI  G  G
Sbjct: 366 FVEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVLTDEDPRGEDRMAILREIAAGCEG 425

Query: 439 FIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            +E        +R EAI  A+ M  + D ++  GKGHE   +   G      +   +RE 
Sbjct: 426 LMEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKGHERSIVTAEGPVAW-DEVGAVREA 484

Query: 493 LG 494
           L 
Sbjct: 485 LA 486


>gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 15998]
 gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 11379]
 gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
 gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
          Length = 491

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 156/509 (30%), Positives = 241/509 (47%), Gaps = 34/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+       +              I   V+ D+  +  G +F A+ G+   G   
Sbjct: 1   MKLSDLMAGQDHHALRGTPDR------TDITAGVTFDADRVTPGSVFAAVPGHAAGGPHA 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           +  A+A+GA A++V               +   + V + RK  ++ ASR +G+     ++
Sbjct: 55  VAPAVARGAVAVLVDEQAP---PLPRALGDVCAVRVPDVRKAAAVMASRYFGEPGRAMDL 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-------SPIYL 170
           +A+TGT+GK+SV+   + + + +     ++G   T  S   D  +  P           L
Sbjct: 112 IAITGTNGKTSVSYMTESVLRLA--EQARVGVIGTAGSRIGDELIPMPPSVLSTPESPDL 169

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK
Sbjct: 170 QYLLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAK 229

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
           +RLF+ L      A++ ADD     + K    A   V +    G        +    +  
Sbjct: 230 LRLFQGL---CRRAVVNADDPLGAGIRKLMAGA---VTTYALDGDADYRASDLTVDASGS 283

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T+  +G+ +    P PG F V NAL     C  +G   A +++ LE++  +PGRFE +
Sbjct: 284 RFTLHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERL 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   
Sbjct: 344 QIPG-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRAEMGAIAGTH 402

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +D+ ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      D++++A
Sbjct: 403 SDLCVLTSDNPRYEDPEAILDQIAEGIASTGTPFERLTDRRPAIAAALAEAGPDDIVLIA 462

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKG E    +  GE     D   +RE++G
Sbjct: 463 GKGSEPHQSIR-GELLPFSDMATVRELIG 490


>gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
 gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
          Length = 503

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 153/506 (30%), Positives = 235/506 (46%), Gaps = 31/506 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+    PE +           + ++  ++ DSR +++G +F A+ G   DGH F+  
Sbjct: 5   LSSLLDAIKPEEVRG-------GGDPRVRLLAYDSRDVESGALFFALPGLHTDGHRFVED 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+ +GA A+V            + R     L V N R+ LS  ++  YG   +++    V
Sbjct: 58  ALGRGAVAVVHERELP------SYREGVVYLRVKNARRALSAASAVFYGHPSQDLEVTGV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP--TSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
           TGT GKSS   F+ Q+ + SG+    I     ST         R +TP   ++  AL+ +
Sbjct: 112 TGTDGKSSTTYFIYQLLRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARM 171

Query: 178 SSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              G TH  VEA+SHGL     RL+ ++   G  TN+  +H+++H + + Y   K RLF 
Sbjct: 172 REAGCTHAVVEATSHGLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFR 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L P+   A++  DD  S  + +R   AG     +G +       +V          +  
Sbjct: 232 GL-PEGGKAVLNLDDPSSGFLAERTR-AGVWGYGLGTREGARLWAEVREESLAGSRCLVH 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSR 354
             +  +   P PG F V N L A     A    +    L H+  L  VPGR E V    +
Sbjct: 290 GRETLEVWVPFPGRFNVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQ 348

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT  + E +L  +R    GR+IVVFG  G+RD+ KRP+ G++A   A++ +
Sbjct: 349 PFLVLVDYAHTPGAFEKLLPFVRRFVEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVV 408

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +TD++PR ED   I  EI  G  G +E        +R EAI  A+ M  + D ++  GKG
Sbjct: 409 LTDEDPRGEDRMAILREIAAGCEGLVEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKG 468

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE   +   G      +   +RE L 
Sbjct: 469 HERSIVTAEGPVAW-DEVGAVREALA 493


>gi|73663076|ref|YP_301857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495591|dbj|BAE18912.1| UDP-N-acetylmuramyl tripeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 495

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 222/468 (47%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+ I ++++DSR  Q G +FVA  G   D H F    + QG + I+VS           I
Sbjct: 21  EKNITDITTDSRTAQHGSVFVASKGYTVDSHKFCQDVVNQGCQVIIVSH-------QQEI 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  SL A+ LY    + ++    TGT+GK+S+A+ +  I ++ G  S
Sbjct: 74  TGDVTQVIVPDTLRVASLLANTLYNYPSKQLITYGVTGTNGKTSIATMIHHIYRKLGKGS 133

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K ++    +    +++E SSHGL   RL G+ 
Sbjct: 134 AYLGTNGFQINEDKSKGANTTPETVSLTKKINEAVEKNAEAMTLEVSSHGLSLGRLRGVD 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L +E   ++  DDA+S+ +   A
Sbjct: 194 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSQEKFVVLNKDDAFSEYL---A 250

Query: 261 HNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V + G           +       Q T      +F    P  G F V N + A 
Sbjct: 251 SVTPFEVFTYGVTNDAQFTAHHINESLQGVQFTFKTPEGEFQVKSPYVGLFNVSNIMAAM 310

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + GI    +++ +E L  V GR E V   S    + +DYAHT++ ++ ++  ++  
Sbjct: 311 IAVWSKGIALNDIVDAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMDKLIDAVKPF 369

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++ P+ +  E+  G    
Sbjct: 370 AKQKLIFLCGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDAPKTLTQELAKGATHD 428

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E IR AI +    D +V+A KG E   I+    K    D
Sbjct: 429 NYIEFEDRAEGIRHAINIAEPGDTVVLASKGREPYQIMPGHVKVPHRD 476


>gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 506

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 155/503 (30%), Positives = 237/503 (47%), Gaps = 34/503 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I +  P ++ +L + P +        + +DSR    G +FVA  G+  DG  FIPQA+AQ
Sbjct: 18  IRESVPHILERLGLAPGE--------LVNDSRRAAPGKVFVAYPGDARDGRDFIPQAVAQ 69

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA+ ++  + +   D +  I    P   V   +  +   A+ +YG+     +++ VTGT+
Sbjct: 70  GADGVLWEADHYQWDPALAI----PNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTN 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKALSYL 177
           GK+SVA ++ Q     G  +  IG             +       TTP  I L + L+  
Sbjct: 126 GKTSVAHWIAQALSALGRKTAIIGTVGNGFPSTGDTPAALTPALNTTPDAIELQQRLARY 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G    ++E SSHGL Q R++G +      TNL RDH+DYH    +Y  AK RLF   
Sbjct: 186 RGEGAVACAMEVSSHGLAQGRVNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKARLF--N 243

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    A++  DDA+ + +         RV   G+Q   +  + +        + +  + 
Sbjct: 244 WPDLEWAVLNVDDAFGQRL--EGETRPARVAGYGFQRGAVVARGLQLSQAGMHLALQTDW 301

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +   PL G F   N L A    +   +        L ++    GR + +G  +    
Sbjct: 302 GDAEIDAPLLGRFNAANLLAALTALLVSDVKLDDACRALAQVTPPAGRMQTLGGEAH-PL 360

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDY+HT ++LE +L  +R I   GR+I VFGCGG+RD+GKRP+MG  A   AD   VT
Sbjct: 361 VVVDYSHTPDALEKVLATLREIAGGGRLICVFGCGGNRDKGKRPLMGAAAGRGADEIWVT 420

Query: 417 DDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            DNPR EDP  I  +I  G+           +  R  AI  A+   +  DV+++AGKGHE
Sbjct: 421 SDNPRHEDPRAIIDDIRAGLAEAEAEGRVRVEAERARAIFEAVGGAHHGDVVLIAGKGHE 480

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V  GE+    D  + R+ L
Sbjct: 481 DYQEVA-GERLPFSDIAMARKAL 502


>gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 498

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 170/506 (33%), Positives = 262/506 (51%), Gaps = 26/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+ L+     +L +          +R +  ++ DSR I+ G++FVA+ G++  G  ++
Sbjct: 2   MRLRTLLQPWL-DLTD--------ADDRPVGGLAVDSRDIEPGFVFVALRGSRHHGLGYL 52

Query: 61  PQAIAQGAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             A+A GA A++   A  +     + +A  R+  P++ V +  + L   A+RLYG     
Sbjct: 53  GDALAAGAGAVLWEPAGDVAPEPDERTAAERAGVPLIAVPDLGRRLGPIAARLYGDPSAR 112

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
             ++ VTGT GK+SV  ++ Q+  R       +G   +      Q    TTP    + + 
Sbjct: 113 MRVVGVTGTDGKTSVTQYLAQLLDREAHRCGLVGTLGSGFPDSLQPGTHTTPDAASVQRT 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ L  QG   V++E SSH LDQHR+ G++      TNLGRDH+DYH     Y  AK RL
Sbjct: 173 LARLHRQGAAQVAMEVSSHALDQHRVAGVRFHTAVLTNLGRDHLDYHGDLAGYAEAKSRL 232

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQ 290
           F   +P    A++  DDA+ ++V   A   G R L     G+    +  + +       +
Sbjct: 233 FG--VPGLQWAVLNLDDAFGRQVHG-ALAGGTRALGYSLAGHPQAGVRGEGLVLEPQGLR 289

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +S E  +     PL G F   N L  A   +++G+   +++E L  L  VPGR E   
Sbjct: 290 LRLSTEWGEAPVQAPLLGAFNAANVLAVAAAALSLGVALPVIVERLAGLRPVPGRMEPFT 349

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              R   + VDYAHT  +L   L  +R    G + +VFGCGGDRD+GKRP+MG+ A +LA
Sbjct: 350 RPGR-PSVIVDYAHTPAALRGALAAVRAHYRGAVWLVFGCGGDRDRGKRPLMGEAAAELA 408

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D  ++TDDNPR EDP++I  +I  G PG  +    +R  AIR A+E    +DV++VAGKG
Sbjct: 409 DRVVLTDDNPRREDPDRIIDDIRQGAPGRDWPVLRDRAGAIRHAVERAGPEDVVLVAGKG 468

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HETV  + +       D + + + LG
Sbjct: 469 HETVQQIGD-RCLPFSDREAVVQALG 493


>gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas
           atlantica T6c]
 gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 530

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 146/494 (29%), Positives = 230/494 (46%), Gaps = 26/494 (5%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F +Q  +  I  +  DSR +     F+A+ G+  DG  FIPQAI+ GA+ I+       +
Sbjct: 37  FGIQAGDITIESLVLDSRDVAIHSAFIALKGHVRDGRDFIPQAISLGAKVIIAECETQAE 96

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQ 138
               ++R  + I+   +    LS  A+  YG       ++ VTGT+GK+S      Q+  
Sbjct: 97  HGHTSMREQSLIISFYDLSAQLSALAAAFYGYPAKSIQVIGVTGTNGKTSTVQLTSQLAA 156

Query: 139 RSGLSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                +  IG   +         +   +   TTP  I + K ++  +   V  V++E SS
Sbjct: 157 LLNKRAASIGTLGSGVIDQSGACASHNETANTTPDAISMHKLMAQFAQDQVKQVALEVSS 216

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L Q R+  +K      TNL RDH+DYH T QAY  AK  L ++  P+   A++  ++ 
Sbjct: 217 HALVQQRVAALKTDVAVLTNLTRDHLDYHGTMQAYAQAKRELLKQ--PELRFAVLNGNEI 274

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF---------IHLKKVCAIHNKQQVTISVEGKDFDF 302
            SK  + +  +A   V+  G   +             K V   +   +  +     + D 
Sbjct: 275 ESKHWLAQLPSAVTPVI-YGIADESLMLTDAEHQCLAKDVVYSNQGCRFKLVSSWGECDI 333

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F ++NAL A    + +G     + +H   L  V GR E  G       + VDY
Sbjct: 334 QLSLLGRFNIFNALAAIASQLCLGESLNDIAKHAHLLVPVTGRMERFG-GDNSPTVVVDY 392

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++L+  L  +R  + GR+ V+FGCGGDRD GKR +MG++A   AD   +T+DN RS
Sbjct: 393 AHTPDALKQALVALRQHSQGRLSVIFGCGGDRDTGKRSLMGEVAETYADDMTITNDNSRS 452

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP  I  +I+ G           +R  AI  A+      D+++VAGKGHE   I+ N  
Sbjct: 453 EDPTAIATDILSGCVHPEKVQVVLDRKAAIEQAVLNATANDIILVAGKGHEDYQIIGNQT 512

Query: 480 KKMSVDCDIIREIL 493
                + + ++++ 
Sbjct: 513 VAY-DEREYVQQMF 525


>gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae CWL029]
 gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae J138]
 gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae TW-183]
 gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           J138]
 gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 483

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 138/503 (27%), Positives = 232/503 (46%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++       R  ++  ++ DSR +  G IF+A  G + DG+ F 
Sbjct: 1   MDLKELLHGVQAKIYGKV-------RPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+A GA AI  S              +   ++  N  +  +  +++ Y      +  +
Sbjct: 54  VDALANGAIAIASS--------LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++ +       S  +G    I       +  TTP+P  L K L+ +
Sbjct: 106 GVTGTNGKTTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q    V +E SS GL   R+          TN+  DH+D+H T + Y  AK +LF  L
Sbjct: 166 VRQNRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFETYVAAKAKLFS-L 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +P     +I  D  Y+ + ++ A      V++ G +         +    +  + T+   
Sbjct: 225 VPPSGMVVINTDSPYASQCIESAKAP---VITYGIESAADYRATDIQLSSSGTKYTLVYG 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +         G++ VYN L A     A +  D   +LE +      PGR + V      
Sbjct: 282 DQKIACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPVLMGPCP 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             +Y+DYAHT ++L+ +L  +  +    GR+IVVFGCGGDRD+ KR +M ++       A
Sbjct: 342 --VYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQVVERY-GFA 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +VT DNPRSE PE I  EI  G     +  + +R +AI  A+ + + +D++++AGKGHE 
Sbjct: 399 VVTSDNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKGHEA 458

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I  +       D   + E+L 
Sbjct: 459 YQIFKHQTV-AFDDKQTVCEVLA 480


>gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 494

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 221/468 (47%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++++++DSR  + G IFVA  G   D H F    I QG   +VV+    L+      
Sbjct: 20  DINVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCRIVVVNRELELE------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  SL A  L+      +     TGT+GK+S+A+ +  I ++   SS
Sbjct: 74  -GDVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKSS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +     +G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLEVSSHGLSLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSGYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +     V + G   +   + K +       +  +S    D+    P  G F + N + A 
Sbjct: 250 NVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYHVKSPYVGRFNISNIMAAI 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     ++  +  L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGATMEEIINAVTSLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHD 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            ++E  +R E IR AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYVEFDDRAEGIRHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actF]
          Length = 526

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 148/499 (29%), Positives = 236/499 (47%), Gaps = 25/499 (5%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             +L   L + P   R      +  ++ DSR ++ G I+ A+ G +  G  F  QA + G
Sbjct: 22  LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 81

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
           A A +   A + +     + +  P+LVV + R  +   A+R+YG   +++L   +TGTSG
Sbjct: 82  AVAALTDPAGAER----VLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSG 137

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ A  ++   + +G S+  IG   T I      +  TTP    L    + +  +GV  
Sbjct: 138 KTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDA 197

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +LF     +    
Sbjct: 198 VAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGV- 256

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFL 303
            +  DD Y + ++  A        + G+       + V         T +  +G  +   
Sbjct: 257 -VNYDDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPAR 315

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG F V N L A       G D  +  E +  +  VPGR E V    +     VDYA
Sbjct: 316 APLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVD-EGQPYLAVVDYA 374

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T DNPRSE
Sbjct: 375 HKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSE 434

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHI 474
           DP  I A ++ G    +    R + +            +      D +++AGKGHE    
Sbjct: 435 DPLAILAAMLAGAAE-VPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHEQGQD 493

Query: 475 VTNGEKKMSVDCDIIREIL 493
           V NG  +   D ++++E +
Sbjct: 494 V-NGVVRPFDDREVLKEAI 511


>gi|134102304|ref|YP_001107965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914927|emb|CAM05040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 522

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 156/482 (32%), Positives = 234/482 (48%), Gaps = 26/482 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFS 83
           R +   +  ++H++ G +F A+ G +  G  F   A+  GA A++   A      L D  
Sbjct: 25  RPVTGATLRAQHVRPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHP 84

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
                   +LV D+ R  L   A+++YG+  +   IL VTGTSGK++    ++     +G
Sbjct: 85  EVSAGRVALLVHDDPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAG 144

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            ++  +G   T I+    D+  TTP    L   L+ +   GVTHV +E SSH L   R+ 
Sbjct: 145 FTTGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVS 204

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G +   G FTNL +DH+D+H+    YF AK  LF+     E   ++  D  + ++++K  
Sbjct: 205 GTRFTVGGFTNLSQDHLDFHRDLDDYFQAKALLFDGRSEHE---VVCTDTDWGRKLVK-- 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAA 319
              G   +S      +           +Q+ T    G         LPG F + NAL+A 
Sbjct: 260 --PGTITVSTTGDASWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAI 317

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+  A  + +  +   L ++  VPGR E V    +     VDY+H   ++  +L   R  
Sbjct: 318 GILHAAEVPTWAIERGLAEVD-VPGRMERVAL-GQDFTAVVDYSHKPGAVSAVLDAARAQ 375

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR+IVV GCGGDRD  KRP+MG+ A   + + IVTDDNPRSEDP  IRA ++ G    
Sbjct: 376 AEGRVIVVLGCGGDRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAV 435

Query: 439 -------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   IE+G+R EAI  A+   +  D++VVAGKGHET   V  G      D + +  
Sbjct: 436 PAAERGEVIERGDRREAIAEAVARASSGDIVVVAGKGHETGQEVA-GVVHPFSDREELAA 494

Query: 492 IL 493
            L
Sbjct: 495 AL 496


>gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 497

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 145/505 (28%), Positives = 250/505 (49%), Gaps = 24/505 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L Y  FP + N          ++K + +S DSR + +  +F+AI G K+DG+ FI
Sbjct: 1   MKKNNLKYILFPWIKNT--------PQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+ +   AI+  +    +       +N PIL      + +S  A+R+Y +  +   I+
Sbjct: 53  FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKII 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   + Q  +  G     +G       +  +  + TT S I +   L   
Sbjct: 113 GVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + + +  V++E SSHGL Q+R+  I    G FTNL +DH+DYH+  + Y +AK   F + 
Sbjct: 173 AKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ- 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------GYQGKFIHLKKVCAIHNKQQV 291
             K    I+ A+D Y+K+ +++  +     +++       Y  K+I+   +    N   V
Sbjct: 232 -HKIKKIILNANDKYAKKWLRKLSDKYTIAVTIQNEKQKKYSTKWINATGIKYNVNSTDV 290

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                         L G F + N L++    + +    + ++    +L  + GR +    
Sbjct: 291 EFESSWGQGILSTCLIGYFNIQNLLLSFASMLEMNYKLSDLINTSIQLQPILGRMQKFDV 350

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +  ++ +DYAHT ++L+  L  I++    +I  +FGCGG+RDQ KRP+MG I+  +AD
Sbjct: 351 FGK-PKVIIDYAHTPDALKKALNAIKSYYKKKIWCIFGCGGERDQTKRPLMGSISEKIAD 409

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I+T+DNPR+E+  KI  EI+ G       I   NR +AI +     N  D++ ++GKG
Sbjct: 410 RVIITNDNPRNENQNKIIKEIVQGCIKKEKIIIIPNREKAISSTFFKANIDDIIFISGKG 469

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   I+ N     S D  ++ ++L
Sbjct: 470 HENQQIIKNKIINYS-DQKVVIKLL 493


>gi|194477172|ref|YP_002049351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
 gi|171192179|gb|ACB43141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
          Length = 508

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 145/494 (29%), Positives = 241/494 (48%), Gaps = 33/494 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F ++  +RKI  + ++S+ I  G +F+ + G    G  F   A+  GA   +        
Sbjct: 16  FGVELIDRKIYAICTNSKKITPGSLFIGLPGTNVSGDSFCYSALDSGAITAL-------- 67

Query: 81  DFSATIRSNTPILVVDNTR--------KFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
                + S+ P+  V NT          + SL A+  + +      +L VTGT+GK++V 
Sbjct: 68  GRKIAVISDLPL--VANTLTNADKQIAHWTSLLATNFWQQPSRWMILLGVTGTNGKTTVT 125

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ +   SG  S   G  +     ++   + TTP    L   L+     G    ++E 
Sbjct: 126 HLIEHLSTASGRPSALFGTLANRWPGYSATTKNTTPFADQLQAQLALAVEAGSQIGAMEV 185

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESP-AIIY 247
           SSH L+Q+R+ G +     FTNL +DH+DYH + +AYF +K  LFE  LL    P A+I 
Sbjct: 186 SSHALNQYRVMGCQFAGAVFTNLSQDHLDYHPSLEAYFESKASLFEHPLLANHGPLAVIN 245

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD +   + +R  +   R     +  +        +++    + ++  G+ + F  P+ 
Sbjct: 246 SDDLWGARLAQRLGSNCWRSSLRDFSAELTMRNLTFSVNGVSGIIVTPLGEGY-FSSPMV 304

Query: 308 GEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDY 362
           G F + N L A G+ I   G   + +L+ ++    +PGR E +            + +DY
Sbjct: 305 GYFNLMNLLQAIGVLIQQKGFSLSSLLKAVKTFRGIPGRMERLIPYPNKLDLSPSVIIDY 364

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + LE  L   R+   G +I VFGCGG+RD+ KRPIMG+ A  LAD  IVT DNPR+
Sbjct: 365 AHTPDGLEKALIAARSFVKGSLICVFGCGGNRDKRKRPIMGETAARLADEIIVTSDNPRT 424

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E+PE+I  +I+ GIP     + + +R  AI +++   +  D++++ GKGHE   I  + +
Sbjct: 425 ENPEEIIKDILAGIPLGRKVLVEVDRSIAIMSSVSAASPNDLILIVGKGHEDYQIFRD-D 483

Query: 480 KKMSVDCDIIREIL 493
                D +   + L
Sbjct: 484 SVYFEDREEAEKSL 497


>gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes 266]
          Length = 529

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 155/493 (31%), Positives = 236/493 (47%), Gaps = 23/493 (4%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+              I  ++ DSR ++ G ++V + G    G  F   A+  GA A++
Sbjct: 29  DLVASFDSCRANDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVL 88

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
                +    +    +  PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A
Sbjct: 89  TDEDGA----TLAAEAGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTA 144

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVS 186
             V+   + +G     IG         +       +TTP    L    + ++ +G + V 
Sbjct: 145 FLVEAGLRAAGHHVGTIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVV 204

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+DG      +FTNLGRDH+D+H T   YFNAK RLF   L +     I
Sbjct: 205 MEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGV--I 262

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD   +++++R    G + ++   +Q     +    A        +S    +      
Sbjct: 263 NVDDPRGRQLVERMQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELS 322

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPGEF V NA +A  +  A G+    V + L     VPGR E V          VD+AHT
Sbjct: 323 LPGEFNVRNAAMALAMLEAAGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALVDFAHT 381

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++   L   R+ +  GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+ED
Sbjct: 382 PQAIASALDAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTED 441

Query: 425 PEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           P  IRA ++ G           I+ G R EAI  A+ M    DV+ V GKGHET   + +
Sbjct: 442 PAVIRAAVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS 501

Query: 478 GEKKMSVDCDIIR 490
            E     D ++IR
Sbjct: 502 -EVLPFDDREVIR 513


>gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 157/509 (30%), Positives = 242/509 (47%), Gaps = 34/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+       +              +   V+ D+  +  G +F A+ G+   G   
Sbjct: 1   MKLSDLMAGQDHHALRGTPDR------TDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHA 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           +  A+A+GA A++V               +  +L V + RK  ++ ASR +G+     ++
Sbjct: 55  VAPAVARGAVAVLVDQQAPTL---PAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-------SPIYL 170
           +A+TGT+GK+SV+   + + + +     ++G   T  S   D  +  P           L
Sbjct: 112 IAITGTNGKTSVSYMTESVLRLA--ERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDL 169

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK
Sbjct: 170 QYLLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAK 229

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
           +RLF+ L      A++ ADD     + K    A   V +    G        +    +  
Sbjct: 230 LRLFQGL---CRRAVVNADDPVGAGIRKLMPGA---VTTYALDGDADYRASDLTVDASGS 283

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T+  +G+ +    P PG F V NAL     C  +G   A ++  LE++  +PGRFE +
Sbjct: 284 RFTLHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERL 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +  G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   
Sbjct: 344 QISG-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTH 402

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +D+ ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      D++++A
Sbjct: 403 SDVCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIA 462

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKG E    V  GE     D   +RE++G
Sbjct: 463 GKGSEPHQSVR-GELLPFSDMATVRELIG 490


>gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
 gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
          Length = 544

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 150/499 (30%), Positives = 236/499 (47%), Gaps = 22/499 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  +     Q  E  +  V   ++ I A  +F A+ G +  G  F   A+ +GA AI+  
Sbjct: 37  LEWVGQPGSQSSEVVVKGVDLRAQGIVADDLFAALPGARTHGAQFAVDALGRGATAILTD 96

Query: 75  SAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA-- 130
            A    ++        + P+LV  N R  L   ++ +YG+  E +  V  T         
Sbjct: 97  EAGLELIEAAGKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTTTS 156

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++     +G     +G   T I      + LTTP    L    + ++ QG+  V +E 
Sbjct: 157 YLLEAAIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEV 216

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYA 248
           SSH L   R+DGI+   G+FTNL +DH+D+H+  + YF AK RLF+ E   +   A++  
Sbjct: 217 SSHALALGRVDGIRFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVVCV 276

Query: 249 DDAYSKEVMKRAH----NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFL 303
           DD + + + + A     +A   V +   + ++       A    Q   +   +G+ +   
Sbjct: 277 DDVWGRRMAELAATDESDAVTTVSTSTAEAEWKVGAVEVAEDGSQTFELVGPDGQSWPVS 336

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG + V NA +A  +  A G+D    +  L  +  VPGR + +    +     VDYA
Sbjct: 337 LRLPGRYNVANAALALTVSFAAGLDPDAAVRALGTVD-VPGRVQRID-RGQSFLAVVDYA 394

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +LE ++  +R    GR+ VV G GGDRD GKR +MG+     AD+ IVTDDNPR+E
Sbjct: 395 HKPAALEAVIATLRNQVPGRVAVVVGAGGDRDAGKRTLMGEAGARGADLLIVTDDNPRTE 454

Query: 424 DPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DP KIRA ++ G             E G+R  AI  A+      DV++VAGKGHE    +
Sbjct: 455 DPAKIRASVMQGAIDVPESERGEIREVGDRALAIEQAVRWAQPGDVVLVAGKGHEVGQEI 514

Query: 476 TNGEKKMSVDCDIIREILG 494
            +G K    D +++ E++G
Sbjct: 515 -DGVKHPFDDREVLGEMIG 532


>gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
 gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
          Length = 458

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 229/464 (49%), Gaps = 23/464 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR ++ G  F+AI     DGH +I QAIA GA  I+        +           ++
Sbjct: 7   TDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGATKIIAEHGSYKVET----------II 56

Query: 95  VDNTRKFLS--LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           V++TR++L   L+ +         ++ +TGT+GK++      QI +    +   +G    
Sbjct: 57  VESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGF 116

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 +    TTP    L   L      GV +  +E SSH LD+ R+ G++    +FTN
Sbjct: 117 YYGDVKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFDEVAFTN 176

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH+T + Y NAK  LF +    +  AII  DD + +  +  ++N       +G
Sbjct: 177 LTQDHLDYHKTLENYANAKRILFTK-TRNDKIAIINGDDEHYQHFVLESNNNII----IG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                + + ++   H            ++     + G + +YN L+A  L   +G+    
Sbjct: 232 QHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIED 291

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L   +KL    GR E +   +    I+VDYAHT +++  +LK+     +GRII + GCG
Sbjct: 292 ILALNDKLKAPAGRMELLKYGTN--SIFVDYAHTPDAVINVLKSAEEFKNGRIITIIGCG 349

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAI 449
           GDRD  KRPIMGK AL+ +D  I T DNPRSEDP+ I  +I +G+ G  F  + +R +AI
Sbjct: 350 GDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEIEVDRQKAI 409

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              ++ L   D+L++ GKGHE   I   G K    D + + + +
Sbjct: 410 IKGMQQLKHNDILMILGKGHEDYQITKTG-KHHFSDQEEVMKYI 452


>gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
 gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
          Length = 520

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 147/494 (29%), Positives = 233/494 (47%), Gaps = 36/494 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  +++DSR ++ G  F+A  G + D    IPQAIA G  A++       Q FS    
Sbjct: 23  VKIQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVIWEK----QGFSWKPE 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L +   R      AS++Y        ++ +TGT+GK++ + +  Q     G  + 
Sbjct: 79  WKIPNLGISGLRHEAGKIASQVYDHPSRHLRLVGITGTNGKTTCSHWYAQTMMTLGEKTA 138

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG               TTP  +YL + ++     G   + +EASSHGL Q RL G + 
Sbjct: 139 IIGTLGHGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEASSHGLSQDRLAGSEF 198

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL RDH+DYH +  AY  AK +LF         A++  D+    E+ ++     
Sbjct: 199 SIAVLTNLTRDHLDYHGSMDAYAAAKAKLF--FWEGLQHAVLNLDEVLGVELSQQLAWKD 256

Query: 265 CRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVY 313
             ++  G++      +      I     +  + +   FD  F          + G +  Y
Sbjct: 257 VSIIGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNRRASLQCNVTGRYNAY 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L      +A  +D    +  L+++  +PGR E +G   +   + VDYAHT ++L  +L
Sbjct: 317 NLLAVLATLLASNVDLDDAITALQQVQPIPGRMEKLGGGDQPI-VIVDYAHTPDALNEVL 375

Query: 374 KNIRTITSG------------RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             +R   +G            +++ V GCGGDRD+GKRP++G+IA  LAD  I+T DNPR
Sbjct: 376 TGLRETLAGTRMKKRIRKNQAKLVCVIGCGGDRDRGKRPLIGEIASHLADEVIITSDNPR 435

Query: 422 SEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           +E+P  I  EI+ G  G     + +R  AI  AI    K D++++AGKG ET   +  G+
Sbjct: 436 NENPADIINEIMLGASGKHCTAEADRTAAIYRAIHGARKGDIVLIAGKGAETHQEI-QGK 494

Query: 480 KKMSVDCDIIREIL 493
           K    D +++R++L
Sbjct: 495 KYPFDDREVVRQVL 508


>gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
          Length = 497

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 146/505 (28%), Positives = 234/505 (46%), Gaps = 35/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+ KD   + N   I   Q  + +I+++  DSR      IFVAI G   DGH +I
Sbjct: 1   MKLKDLL-KDIEYISN---IKESQLEDIEISDIVYDSRKAVKDSIFVAIKGETVDGHDYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A  +G+   +++    ++D +         ++V ++R+ LS  ++  + +  + +  +
Sbjct: 57  KGAYDKGSRVFIINHDLEIEDDAIK-------IIVPDSRRVLSRMSAIFFSEPTKKLKVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYL 177
            +TGT GK++++++++ +  +SG+++  IG      +   +    TTP    L K +  +
Sbjct: 110 GITGTKGKTTISNYIKTVLTKSGMNTGVIGTNGVFYNDVAEKTLNTTPESYELQKTIKEM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              GV  V++E SS GL   R+D I    G +TNL  DHI    H T + Y   K RLF 
Sbjct: 170 LDAGVECVAMEVSSSGLMMGRVDDIDFDIGVYTNLSPDHIGPKEHPTFEHYRECKSRLFG 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
             L K     I  DD  ++ ++  A    C         +  I    +    +   + + 
Sbjct: 230 --LCKYGI--INVDDENAQYMVDHAK---CPTCGFSIDKESNIKAGNIELTRSSASLGVD 282

Query: 295 VEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            + K             PGEF +YNAL   G+C   GID   +LE L     V GR E +
Sbjct: 283 FDYKLKDQDTVRTHICSPGEFSIYNALAVIGVCDHFGIDRDKMLEALSDAK-VDGRVEVI 341

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   + +DYAH   SLE +L  +      R+I V+G  G R   +R  +G +A  L
Sbjct: 342 PVLDN-ATVILDYAHNGLSLENVLDTLLKYDHNRMICVYGSIGGRAAIRRKELGDVAARL 400

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D++I+T DNP  EDP KI  EI     G      +  +R EAI  A+EM    D+++V 
Sbjct: 401 CDVSIITTDNPDDEDPMKIIDEIAESYVGSDSEVHKVVDRAEAIYKALEMAEDGDMVLVT 460

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIR 490
           GKGHE    +           ++I+
Sbjct: 461 GKGHEKYQYIHGQRVFYDEKAEVIK 485


>gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
 gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
          Length = 454

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 229/463 (49%), Gaps = 29/463 (6%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR ++ G  F+AI     DGH +I QAIA GA  I+        +           ++
Sbjct: 7   TDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGATKIIAEHGNYSVET----------VI 56

Query: 95  VDNTRKFLSLFASRLYGKHP----ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           V+NTRK+L+ +       +P      ++ VTGT+GK++    + Q+          +G  
Sbjct: 57  VENTRKYLNEY--LYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGTV 114

Query: 151 S-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +  ++   TTP    L   L    + GV +  +E SSH L + R+ G++    +F
Sbjct: 115 GFYYGNIKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEVSSHALAKQRIYGLEFDEVAF 174

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH+T + Y NAK +LFE+       AII  DD + +  M   +N       
Sbjct: 175 TNLTQDHLDYHKTLENYANAKRKLFEK-TRNNKIAIINGDDIHHQHFMLEGNNNIVI--- 230

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                + + ++ V   H   +         +     + G + +YN L A  L   +G   
Sbjct: 231 ----DRDVKIENVDFSHLGTEFDFRYLDNSYHVRLNMVGRYNIYNYLTALLLVNKLGFKI 286

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +L   EKL    GR E +  N+    I+VDYAHT +++E +LK+ +    G+II + G
Sbjct: 287 EDILLLNEKLKAPAGRMELIKYNTN--SIFVDYAHTPDAVENVLKSAQEFKKGKIITIIG 344

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIE 447
           CGG+RD  KRPIMGKIA+D +D  I T DNPR E+PE I  +I   +    F     R +
Sbjct: 345 CGGNRDATKRPIMGKIAVDNSDYVIFTSDNPRKEEPEAILNDITANLISDNFEIIVERQD 404

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           AI   ++ML++ D+L++ GKGHE      +G++  S   ++++
Sbjct: 405 AIYKGVKMLDENDILMILGKGHENYQETKDGKRHFSDQEEVLK 447


>gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas europaea ATCC 19718]
 gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas
           europaea ATCC 19718]
          Length = 521

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 152/508 (29%), Positives = 240/508 (47%), Gaps = 44/508 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+NQL        + K+  + +DSR ++ G  F+A  G + D    IPQAIA+G  AI+ 
Sbjct: 18  LLNQL--------DVKVRHLVADSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAIIW 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVAS 131
                 Q FS       P L V   R      AS  YG    ++  + +TGT+GK++ + 
Sbjct: 70  EK----QGFSWKPEWKIPNLGVAGLRHEAGKIASEAYGHPSRHLWLVGITGTNGKTTCSQ 125

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +  Q     G  +  IG            +  TTP  +YL + ++    QG + + +EAS
Sbjct: 126 WYAQAMAALGKKTAVIGTLGHGFPGALYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEAS 185

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL Q RL G +      TNL RDH+DYH +  AY  AK +LF         A++  D+
Sbjct: 186 SHGLSQDRLIGSEFAVAVLTNLTRDHLDYHDSMDAYAAAKAKLF--FWEGLQYAVLNLDE 243

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-----------GKFIHLKKVCAIHNKQQVTISVEGKD 299
               E+ ++       ++  G++            K ++   +     +    +    + 
Sbjct: 244 VLGVELSQQLAGKDLSIIGYGFKQPRQTAQTAGNQKILYGSNLQFTTQQIGFDVEFCNRY 303

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G +  YN L      +A  ID    +  L ++  +PGR E +G       + 
Sbjct: 304 ASLQCNVTGRYNAYNLLAVLAALLASNIDLDDAITALRQVQPIPGRMEKLG-GGNQPVVI 362

Query: 360 VDYAHTSNSLEMILKNIRTITSG------------RIIVVFGCGGDRDQGKRPIMGKIAL 407
           VDYAHT ++L  +L  +R   +G            ++I V GCGGDRD+GKRP++G+IA 
Sbjct: 363 VDYAHTPDALNEVLTGLRETLAGTRIKKRIRKNQAKLICVIGCGGDRDRGKRPLIGEIAS 422

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            LAD  I+T DNPR+E+P  I +E++ G  G     + +R  AI  AI    K D++++A
Sbjct: 423 RLADEVIITSDNPRNENPADIISEVMLGASGKHCTSEVDRTAAIYRAIHGARKGDIVLIA 482

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG ET   +  G+K    D +++R++L
Sbjct: 483 GKGAETSQEI-QGKKYPYDDREVVRQVL 509


>gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 528

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 159/527 (30%), Positives = 254/527 (48%), Gaps = 72/527 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   +F AI G   DG+ FI  A+ Q A  ++  +  ++     
Sbjct: 9   FQQHNVKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALVITDNKKNIVIDK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V++ +  L       Y K P+N+ AVTGT+GKSSV S++ Q     G  +
Sbjct: 68  -------VIYVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQTYSLLGKKT 120

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     P    L      K    L+  G+ +++ EASSHGLDQ RL
Sbjct: 121 ASIGTIGGEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEASSHGLDQARL 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK------------------- 240
             IK+    FT+  +DH+DYH T++ Y  AK++LF   L K                   
Sbjct: 181 GEIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGDTERRTAAYT 240

Query: 241 ------------------------------ESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                                            AI+ +D    + V    HN   + ++V
Sbjct: 241 SDRADSSTGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLHNHNIKFITV 300

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +G    + ++ +    Q +  +   ++++F  P+ G FQ  N L+AA      G D  
Sbjct: 301 GKKGDL-EITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAALSVHYTGFDFN 359

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVF 388
            ++E L ++  V GR E +        I+VDY+HT ++LE  L  ++ I     ++ VVF
Sbjct: 360 KIIEILTQVKPVKGRMERI----DNTNIFVDYSHTPDALEKALTELKNIKLRDSKLSVVF 415

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRI 446
           GCGG+RD+ KR IMG+IA  LAD  I+TDDNPR+E+P+ IR EII GI    + E  NR 
Sbjct: 416 GCGGNRDKTKRSIMGQIAAKLADTIIITDDNPRNENPKLIRTEIISGIDKADYTEIANRE 475

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI+  I  L + D+L++AGKGHE   I+ + +K    D +++R+ +
Sbjct: 476 EAIKYGINNLKQDDILLIAGKGHENYQIIGD-KKLPFDDAEVVRKCI 521


>gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phymatum STM815]
 gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum
           STM815]
          Length = 512

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 225/474 (47%), Gaps = 27/474 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +DSR I  G +F+A   +  D   FI  AI +GA A++V +     D    +     
Sbjct: 30  HLHADSRKIAPGDVFLAYAVDGADNRPFIASAIERGAAAVLVQADGFAGDIDPALM---- 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            + V    +     AS  YG   +   ++ VTGT+GK+S  +++       G     IG 
Sbjct: 86  -VAVPRLNELTGTIASAWYGDPSDAMRVIGVTGTNGKTSCTNWISAALTALGQPCAIIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L  L + G   V++E SSH L Q R++G     G 
Sbjct: 145 LGSGMPGQLVHTGFTTPDAPQLQRSLEQLRAAGAKAVAMEVSSHALHQGRVNGTAFSVGV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T  AY  AK RLF    P+   A+I ADD   + ++  + N   + +
Sbjct: 205 FTNLTQDHLDYHGTFAAYEAAKARLFS--WPELKAAVINADDEAGRRMIA-STNGHAKTI 261

Query: 269 SVGYQGKFIHLKK-------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +   Q +             V A        I+ +  + D      G F V N L   G 
Sbjct: 262 AYSLQPRADVQADASIVASNVRATTTGTAFHIASDWGNSDIEVNTLGAFNVSNLLGVLGA 321

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +A  +     +  + KL  V GR E +G    +    + +DYAHT ++LE  L  +R I
Sbjct: 322 LLASDVPFDAAVAQIAKLESVNGRMERLGGRVQNDEPLVVIDYAHTPDALEQTLTALRPI 381

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                G++I +FGCGGDRD  KRP+MG+IA   AD  +VT DNPRSEDP KI  +I  G+
Sbjct: 382 ADARGGKLICMFGCGGDRDATKRPLMGEIAERCADGVVVTSDNPRSEDPHKIIDQIAAGM 441

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                     +R  AI  A+    ++DV+V+AGKGHE+   +  G+K+   D D
Sbjct: 442 KDASKARRIEDRASAILQAVRCAAREDVVVLAGKGHESTQEIM-GKKRAFSDQD 494


>gi|116072268|ref|ZP_01469535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
 gi|116064790|gb|EAU70549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
          Length = 502

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 155/502 (30%), Positives = 237/502 (47%), Gaps = 29/502 (5%)

Query: 11  FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+  + + P +     +I  V+SDSR    G +FV + G++ DG LF  QA+     
Sbjct: 5   LDELLRDVGLTPTVGGSNPQIESVTSDSRLAGPGSLFVGLPGDRVDGGLFWRQAL----- 59

Query: 70  AIVVSSAYSLQDFSATIRSNTP-----ILVVDNTRK-FLSLFASRLYGKHPEN--ILAVT 121
               + A +     A    + P     ++VV +     L   A+  + +  E   +L VT
Sbjct: 60  ---NAGAAAAVIGPAAAAVDPPGDSDQVVVVADPLASTLGELAASFWSRPSERMALLGVT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT+GK++    ++ +    G S+   G      S  +     TT     L   L+  +S 
Sbjct: 117 GTNGKTTTTYLIEHLALACGRSTALFGTLVNRWSGHSITATHTTAFADRLQAQLAEAASA 176

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G    ++E SSH L QHR+ G +     FTNL +DH+DYH + + YF AK  LF E L +
Sbjct: 177 GSLLAAMEISSHALAQHRVAGCRFAGAVFTNLTQDHLDYHLSMEDYFEAKALLFSEALLQ 236

Query: 241 ESPAI--IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             PA   +  DD +  ++ +R      R  S+      + ++ +C   +     +     
Sbjct: 237 AGPARAVVNGDDPWGAKLAERLGAQCWRS-SLTDPTAELRMEDLCMTSHGVSGRLISPLG 295

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355
           +  F  PL G F + N L A G+ +   +    +L  +     VPGR E V         
Sbjct: 296 EGAFQSPLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAITTT 355

Query: 356 -GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + LE  L   R    G++I VFGCGGDRD+GKRP M  IA  LAD  +
Sbjct: 356 LPTVLVDYAHTPDGLENALAAARPFAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVV 415

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+EDP +I  +++ GIP  +++    +R  AI   I   +  D+++VAGKGHE 
Sbjct: 416 VTSDNPRTEDPLRILEDVVKGIPDGVDRVVDPDRGAAIAQTIAEADAADLVLVAGKGHED 475

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   EK    D +  ++ L
Sbjct: 476 YQIL-GIEKVHFDDREEAQKAL 496


>gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
 gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
          Length = 494

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 218/468 (46%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ ++++++DSR  + G IFVA  G   D H F    I QG   +VV+    L+      
Sbjct: 20  DKNVDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQGCSIVVVNRELELE------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
                 ++V +T +  SL A  L+      +     TGT+GK+S+A+ +  I ++   +S
Sbjct: 74  -GEVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDANAEAMTMEVSSHGLSLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDEFSHYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V + G   +   + K +       +  +S    D+    P  G F + N + A 
Sbjct: 250 SVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYRVKSPYVGRFNISNIMAAI 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     ++  +  L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGASMEEIINAVTSLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVKPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHD 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            ++E  +R E IR AIE+    D +V+A KG E   I+    K    D
Sbjct: 428 NYVEFDDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
 gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
          Length = 530

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 165/529 (31%), Positives = 256/529 (48%), Gaps = 71/529 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +++  +  +S +S+ ++   IF AI G   DG+ FI + + Q A A+V++      D   
Sbjct: 9   FQKHNVKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQ-AVALVIT------DNKK 61

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               +  ++ V++ +  L       Y K P+N++AVTGT+GKSSV S++ Q     G  +
Sbjct: 62  NTIIDDKVIYVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKA 121

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +     P    L      K    L+   + +++ EASSHGL+Q RL
Sbjct: 122 ASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQARL 181

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK------------------- 240
             IK+    FT+  +DH+DYH T++ Y  AK++LF   L K                   
Sbjct: 182 GEIKVNTACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLFKPAYREEFKGDTEHSTTAYI 241

Query: 241 ------------------------------ESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                                            AI+ +D A  + V     N   + ++V
Sbjct: 242 LVREDASTGSTSKLLLEAKFGKMSTEYLLQGGLAILNSDIAEIEFVKDYLRNHNIKFITV 301

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +G  + + K+      Q +      ++  F   + G FQ  N L+AA     IG D  
Sbjct: 302 GKKGD-VQITKINGSLKAQNINFIFNNRECSFNTSIIGSFQASNLLIAALSIHYIGFDFN 360

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVF 388
            ++E L ++  V GR E +G       I+VDY+HT ++LE  L  ++   +   R+ VVF
Sbjct: 361 KIIEILTQVKPVKGRMERIG----NTNIFVDYSHTPDALEKALTELKNVKLRDSRLNVVF 416

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRI 446
           GCGG+RD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEII GI    + E  NR 
Sbjct: 417 GCGGNRDKTKRSLMGQIAARLADNVIITDDNPRHEDPKLIRAEIISGIEKADYTEIANRE 476

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           EAI+  I  L + D+L++AGKGHE   I+ + +K    D +I+R+++ L
Sbjct: 477 EAIKYGINNLKQDDILLIAGKGHENYQIIGD-KKLPFDDAEIVRKLMSL 524


>gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
 gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
          Length = 494

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 219/468 (46%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++++ ++++DSR  + G IFVA  G   D H F    + QG   IVV+    L+      
Sbjct: 20  DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQDLK------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
                 ++V +T +  SL A  L+      ++    TGT+GK+S+A+ +  I ++   SS
Sbjct: 74  -GEVTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKSS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +     +G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S+ +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSEYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V + G           V       +         +    P  G+F + N + A 
Sbjct: 250 SVTPYEVFTYGIDHDAQFKAINVEESLQGVKFEFDTPFGSYQVESPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     ++E ++ L  V GR E +  N     + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGATFEDIIEAVKSLEPVEGRLEVLDPN-LPIDLIIDYAHTADGMNKLIDAVKPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
              ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDMTKTPEMGSVAC-HADYVIFTPDNPANDDPKMLTAELAKGATHS 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|312795056|ref|YP_004027978.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166831|emb|CBW73834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (EC 6.3.2.13) [Burkholderia rhizoxinica HKI 454]
          Length = 510

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 149/476 (31%), Positives = 221/476 (46%), Gaps = 28/476 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR + AG  FVA   +  D   +I  A+ +GA A++V +               P+L V
Sbjct: 35  DSRAVCAGDAFVAYAVDSADSRAYIADALQRGAAAVLVQAGGEF-------PGGGPVLQV 87

Query: 96  DNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
               +     AS  YG+   ++L   +TGT+GK++ + +V      SG     IG   T 
Sbjct: 88  PELDQLAGHIASAWYGEPSRDMLMVGITGTNGKTTTSHWVAGALSGSGTRCAIIGTLGTG 147

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +         TTP    +  +L+ L + G + VS+E SSH L Q R++G+      FTNL
Sbjct: 148 LPGQLSPTGFTTPDAPQVHHSLAALRAHGASAVSMEVSSHALHQGRVNGVAFDIAVFTNL 207

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            +DH+DYH+   +Y  AK RLF+   P    A+I  DD   + ++        R +S G 
Sbjct: 208 TQDHLDYHKDLASYEAAKARLFD--WPGLRAAVINRDDEAGRRLIGHL-ATRVRTISYGI 264

Query: 273 Q------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     +H   + A       T+  +    +      G F V N L   G+ +A  
Sbjct: 265 ASTRPRGDASLHAMAIRATATGTAFTVVSDWGHAELEVGTLGLFNVANLLAVLGVLLAAD 324

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSR--GGRIYVDYAHTSNSLEMILKNIRTIT---S 381
           +     L  + +L  V GR + +G   +     + VDYAHT ++LE  L  +R I     
Sbjct: 325 VPFDAALSQITRLEPVNGRMQQLGGRPQVDEPLVVVDYAHTPDALEKTLDALRPIATQRG 384

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PG 438
           G+++ VFGCGG+RD  KRP+MG IA  LAD  IVT DNPRSE P  I  +I+  +     
Sbjct: 385 GKLVCVFGCGGERDATKRPLMGAIAERLADSVIVTSDNPRSEPPLAIIGQIVSAMREPAR 444

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                +R  AI  A+   +  DV+++AGKGHE    V  G+K+   D D     L 
Sbjct: 445 VRTIEDRAGAILQAVRGASAADVVLIAGKGHEATQEVM-GKKRPFSDQDHAHLALA 499


>gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
 gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
          Length = 506

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 147/518 (28%), Positives = 232/518 (44%), Gaps = 43/518 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +  K   E +           + ++ ++  DSR I    +FV +VG   DGH +I
Sbjct: 1   MKLSKICEKIKYECL-------QGSMDAEVRDIIYDSRKIAKETMFVCMVGAVTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+ +GA  IVV          A I     +L V++ R  L+L ++ L+    E ++ +
Sbjct: 54  PDAVEKGASVIVVERDEEA----AQIPGTITVLKVESARYALALMSAALFDYPAEKLITI 109

Query: 121 T--GTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
              GT GK++    ++ + + +G     IG     I      ++ TTP    L +  + +
Sbjct: 110 GLTGTKGKTTTTYMIKNVLEAAGKKVGLIGTIGAMIGDEKIPSKNTTPESYELHRMFASM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G  +  +E SS GL   R  GI    G FTNL  DHI    H + + Y   K  LF 
Sbjct: 170 VEAGCEYAVMEVSSQGLKMDRTAGIMFDYGVFTNLSPDHIGPNEHASFEEYLECKSMLFR 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI------------HLKKVC 283
           +        I+ ADD +S+ V   A N  C + S G +                      
Sbjct: 230 QC----KIGILNADDEHSEAV---AANHTCEIHSFGVEDNNEKTFLGKPLDLVAADLGFI 282

Query: 284 AIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             + K  +   V+G  D +    +PG F VYN+LV   +C   GI    +L+ L K+  V
Sbjct: 283 KENGKLGMYFHVKGCMDCEARVHIPGRFSVYNSLVTMLVCHLAGISDQAILDGLNKVQ-V 341

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E +   S+   + +DYAH   S   +L  +      R+I V+G GG+R + +R  M
Sbjct: 342 KGRVEMLPV-SKDYYLIIDYAHNEVSTRSVLTTLMEYHPKRLICVYGGGGNRSKLRRYDM 400

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNK 458
           G++  ++AD+ ++T DNPR E+   I  +I  G+      +IE  +R EAI   +     
Sbjct: 401 GEVTGEMADLCVLTCDNPRDEEIRDINNDIKVGLAKSNGKYIEIDDRKEAIAYCMVNAQP 460

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            D++V+ GKGHE    +  G K    + + + EIL  I
Sbjct: 461 GDMIVLLGKGHEDYQEIR-GVKYHFDEREAVAEILEEI 497


>gi|119717292|ref|YP_924257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
 gi|119537953|gb|ABL82570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
          Length = 504

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 244/473 (51%), Gaps = 20/473 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +S  S+ I+ G ++ A+ G++  G  F   A+A GA A+    A + +       +
Sbjct: 35  EVSGISLSSQRIRPGDLYAALPGSRAHGIEFAQDALAAGAVAVFTDEAGADRG-----PA 89

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P LVVD  R  L   ++R+YG+      ++ VTGT GK++    ++   Q++G+ +  
Sbjct: 90  GAPHLVVDRPRAVLGRLSARIYGEPAASMRMVGVTGTQGKTTTTRLLEAGLQQAGVPAAV 149

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   T I+     + LTTP    L    + +  + V   ++E SSH L   R+DG+   
Sbjct: 150 VGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRACAMEVSSHALVMGRVDGVVFD 209

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              F NLGRDH+D+H+  + Y+ AK  LF     +   A++  DDA+ + + + A     
Sbjct: 210 VAVFLNLGRDHLDFHRDLEDYYAAKASLFTP--ERARFALVNVDDAHGRRLAEEA-TVPV 266

Query: 266 RVLSVGY----QGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAG 320
           R  S+G     Q        V       +  + + +G+       LPG+F V N L A  
Sbjct: 267 RTFSMGRGDDAQRADWRAVDVRLRATGSEFVVVAPDGRRIPAGCALPGDFNVANTLAAVA 326

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+D A+V   +     VPGR E V    +   + VDYAH  +++E  ++ +R +T
Sbjct: 327 AAAEAGLDPAVVAAGIAAAGGVPGRLERVDA-GQDFLVVVDYAHKPDAVEAAIRTLRPLT 385

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--G 438
            GR+IVV G GGDRD GKRPIM  IA  LAD+ +VTDDNPR+EDP  IRA ++ G+    
Sbjct: 386 EGRVIVVLGAGGDRDPGKRPIMAGIAARLADLLVVTDDNPRTEDPAAIRAAMLAGVVTGQ 445

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            IE G R  AIR A+      D++++AGKGHET   V +G      D +++RE
Sbjct: 446 AIEVGGRRAAIREALRRAGPGDIVLIAGKGHETGQEV-DGVVHPFDDREVVRE 497


>gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 512

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 163/493 (33%), Positives = 239/493 (48%), Gaps = 33/493 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL   L +       R +  V+ DSR ++ G+ FVA+ G K DG  F+P+A+ +GA  +V
Sbjct: 28  ELRRVLGVEVPAGVGR-VCGVTHDSREVEPGFAFVAVPGFKRDGVEFVPEALRRGAALVV 86

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
                             P+ VV + R  L+  A   +G       +  VTGT+GK++  
Sbjct: 87  AEREV----------PEAPVAVVPDARAALAALACAFHGHPSRRMEVYGVTGTNGKTTTC 136

Query: 131 SFVQQICQRS-GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             +  +   + G     +  T+ +      +    TTP    +  AL+ +  +GV  V++
Sbjct: 137 YALHAVLAGAFGEERCGLMTTAEVVAGGERRPAVRTTPEATEVQAALAGMRERGVERVAM 196

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHG+   R++GI+     FTNL RDH+D H T + Y+  K RLF   L    P +  
Sbjct: 197 EVSSHGIALRRVEGIRFAGAVFTNLSRDHLDLHGTMEEYYRTKRRLF---LWARGPKLSN 253

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           ADDA+ + +          V + G   G    ++ V       +  +    +      PL
Sbjct: 254 ADDAWGRRLAGEVEG----VRTFGSAVGADYRIEGVRPSGAGTRFVLRRGEEALRIEVPL 309

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G++ V NA  AA L + +G+    V   L  +  VPGRFE VG    G  + VDYAHT 
Sbjct: 310 FGDYNVQNAAGAAALALELGVPGETVARALRGMPQVPGRFERVG--GPGFEVIVDYAHTD 367

Query: 367 NSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             LE +L+  R +      GR+I VFG  G+RD  KRP+MG++A  LAD  I+T D+  S
Sbjct: 368 VGLEAVLRVAREVARRGRPGRVICVFGAAGERDGAKRPLMGRVASRLADRGIITTDDAYS 427

Query: 423 EDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           EDPEKI  E+  G+         +R EAIR A+    + DV+VVAGKGHE V  +  G+ 
Sbjct: 428 EDPEKIAREVAAGVEDGRLEIVLDRREAIRRALSEAGEGDVVVVAGKGHERVQHLPWGDV 487

Query: 481 KMSVDCDIIREIL 493
               D  +IREIL
Sbjct: 488 PFH-DATVIREIL 499


>gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actG]
          Length = 521

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 151/498 (30%), Positives = 238/498 (47%), Gaps = 23/498 (4%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             +L   L + P   R      +  ++ DSR ++ G I+ A+ G +  G  F  QA + G
Sbjct: 17  LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 76

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
           A A +   A + +     + +  P+LVV + R  +   A+R+YG   +++L   +TGTSG
Sbjct: 77  AVAALTDPAGAER----VLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ A  ++   + +G S+  IG   T I      +  TTP    L    + +  +GV  
Sbjct: 133 KTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDA 192

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +LF     +    
Sbjct: 193 VAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGV- 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFL 303
            +  DD Y + ++  A        + G+       + V         T +  +G  +   
Sbjct: 252 -VNYDDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPAR 310

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG F V N L A       G D  +  E +  +  VPGR E V    +     VDYA
Sbjct: 311 APLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVD-EGQPYLAVVDYA 369

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T DNPRSE
Sbjct: 370 HKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSE 429

Query: 424 DPEKIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DP  I A ++ G       E+G+         AI   +      D +++AGKGHE    V
Sbjct: 430 DPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHEQGQDV 489

Query: 476 TNGEKKMSVDCDIIREIL 493
            NG  +   D ++++E +
Sbjct: 490 -NGVVRPFDDREVLKEAI 506


>gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 495

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 220/476 (46%), Gaps = 16/476 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  ++ +  DSR ++ G  FVAI G    G  F  QA   GA AI+       +  +  
Sbjct: 18  RDIAVSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAEYPAPA 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  + V   R  L   A   +G   H   ++ VTGT+GK+S    + Q     GL 
Sbjct: 78  DA-----IAVPGLRSRLGAMADLFHGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGLR 132

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG     +    +    TTP  + +   L  L   G   V++E SSH LDQ R+DG+
Sbjct: 133 GGSIGTLGAGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGRVDGV 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL RDH+DYH    +Y  AK RLF  L      A++  DD + + +  R   
Sbjct: 193 HYDVAVFTNLTRDHLDYHGDMASYGEAKARLF--LREGLRSAVLNLDDEFGRVLAGRLAE 250

Query: 263 --AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                 V S G +G  +  + +          +S   +      PL G F V N L   G
Sbjct: 251 GVRLVGVSSRGQEGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLLAVGG 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +  A+G   A V   L +L  V GR   +G +     + VDYAHT ++LE  L ++R   
Sbjct: 311 VLHALGDSVACVAAILSRLQPVAGRMNRLGGDGERPLVVVDYAHTPDALEQALASLRAHA 370

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
             R+  VFGCGG+RD+GKRP+M +IA   AD  +VTDDNPR ED + I A I+ G     
Sbjct: 371 GARLTCVFGCGGERDRGKRPMMARIAEQHADRVVVTDDNPRGEDGDAIVAGIMAGFAAPE 430

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               + +R  AI  AI     QDV++VAGKGHE    +  G +    D ++ R  L
Sbjct: 431 AVQVERDRALAIARAIARSGAQDVVLVAGKGHEPYQEIA-GVRHPFDDTEVARAAL 485


>gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
 gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
          Length = 518

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 228/480 (47%), Gaps = 33/480 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG +F A   +  D H FI  AI +GA A++V      + FS  I  +  
Sbjct: 30  HLHADTRSLAAGDVFFAYAVDGADNHPFIEGAIERGAAAVLVQP----EGFSGAIDPSNT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  Y    +++L   +TGT+GK+S + ++       G     IG 
Sbjct: 86  -LAVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYHQT +AY  AK RLF    P+   A+I  DDA  + ++        R +
Sbjct: 205 FTNLTQDHLDYHQTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRLLASTQG-HARTI 261

Query: 269 SVGYQGKFIHLKK------------VCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNA 315
           + G   +   L+             V A        +S  E  D +      G F V N 
Sbjct: 262 AYGLDSEQGALQDAPRADALLLASNVRATATGTAFHLSTSEWGDAEVEVQTLGAFNVSNL 321

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMIL 373
           L   G  +A  +     L  L KL  V GR + +G    +    + +DYAHT ++LE  L
Sbjct: 322 LGVLGALLAADVPFEAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTL 381

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + +R +     G +I +FGCGGDRD  KRP+MG IA  +AD  ++T DNPRSEDP+ I  
Sbjct: 382 EALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVLTSDNPRSEDPQSIIE 441

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 QIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 500


>gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Herminiimonas arsenicoxydans]
 gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Herminiimonas
           arsenicoxydans]
          Length = 508

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 161/481 (33%), Positives = 229/481 (47%), Gaps = 32/481 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I  G +F+A  G++ DG  +I  AI +GA+AI+  +A    D       N P L +
Sbjct: 28  DSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDEEW----NVPHLAI 83

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
           DN R      A+  YG     +  +AVTGT+GK+S + ++     R G  +  IG     
Sbjct: 84  DNLRACAGFIAAAYYGHPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIGTLGVG 143

Query: 153 -----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                          TTP  + L + L  +   G T +++EASS GL Q RL G+     
Sbjct: 144 IFKHGEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHFDMA 203

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTN  RDH+DYH    AY  AK  LF+   P    A++  DDA    +++R       +
Sbjct: 204 LFTNFTRDHLDYHGDMAAYEAAKTMLFD--WPGLRHAVVNLDDALGVRLVERLKRRQSGI 261

Query: 268 LSVGY--------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              GY            +    + + H      ++ +         L GEF V N L   
Sbjct: 262 GITGYTLTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVSNVLGII 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+ +A GI  + V+  +E L  VPGR + +G  +    + +DYAHT ++LE  L  +R +
Sbjct: 322 GILLAKGIALSNVVAAIEALTSVPGRMQQLG-GAEAPLVVIDYAHTPDALEKTLATLREV 380

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                G +  VFGCGGDRD GKRP MGK A+  AD  IVT DNPR E+P  I A+I+ G+
Sbjct: 381 ANERGGALWCVFGCGGDRDAGKRPQMGKAAMA-ADHIIVTSDNPRHEEPASIIAQIVAGM 439

Query: 437 PGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                      +R +AI  A     KQDV+++AGKGHE    +  G K+  +D D     
Sbjct: 440 DVAKNAPHIMEDRAKAILYAGRHAAKQDVILLAGKGHEAYQEIK-GRKQPFLDADHAALA 498

Query: 493 L 493
           L
Sbjct: 499 L 499


>gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 153/486 (31%), Positives = 238/486 (48%), Gaps = 25/486 (5%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L +      +   + +  DSR + +   FVA+ G   DGHLFI +A+  GA AIV  S
Sbjct: 13  SDLLVEGSASAQSSFDRLVIDSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCES 72

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
             ++            I +V ++R+ L+  AS +       +   AVTGT+GK++VA+ V
Sbjct: 73  GPAVAGPD--------IALVKDSRRALAELASLMESDPASKLKVFAVTGTNGKTTVATLV 124

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             +   +   S  IG T     +   +   TTPS + + + L  + + G +H S+E SSH
Sbjct: 125 AHVLDANNHKSGFIGTTGYRDGTHFYEAVRTTPSTVRVYELLGQMLASGCSHCSMELSSH 184

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +DQ R+    +    FTNL RDH+DYH T + YF AK +LF+EL P  + A++  DD  
Sbjct: 185 AIDQDRIRMRDVDVALFTNLTRDHLDYHSTFELYFAAKKKLFDEL-PDGAVAVVNVDDPR 243

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K +   A +    V++ G       +      +    + ++++G      F L G +  
Sbjct: 244 GKGI---AADTTGSVITFG-SDDHSDVSFSIEGNELSGLDLTIDG--HRRRFQLAGTYNA 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N   A     A+G+ +   ++ L     V GRFE +     G  + VDYAHT ++L+ +
Sbjct: 298 SNLAAAYAASRALGLSALESIDALSSSPPVEGRFERMQFEG-GTMVIVDYAHTPDALKNV 356

Query: 373 LKNI-RTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L+    ++  G  +  +FGCGGDRD GKR  MG IA  LA   IVT DNPR+EDP+ I  
Sbjct: 357 LEATLESMRPGSTLWCIFGCGGDRDPGKRAQMGAIAERLAHKVIVTSDNPRTEDPKLILD 416

Query: 431 EIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I  G+    +   + +R +AI  A   +   D LV+AGKGHET  ++         D +
Sbjct: 417 DIRQGLLKPEDAFWEIDRRDAISRAAASMVSGDTLVLAGKGHETYQVIGTTNIH-FDDRE 475

Query: 488 IIREIL 493
             R   
Sbjct: 476 EARLAF 481


>gi|291458599|ref|ZP_06597989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419132|gb|EFE92851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 518

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 155/501 (30%), Positives = 245/501 (48%), Gaps = 26/501 (5%)

Query: 7   IYKDFPELINQLSIFPMQW--RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           I   F E ++ L    +     + ++ EV  DSR    G +FV + G+  D H F+ + I
Sbjct: 21  IMAKFSEWLDGLDYELLHGDPEKVEVGEVIYDSRKAGRGSVFVCMRGSTTDSHSFLQKVI 80

Query: 65  AQGAEAIVVSSAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121
           A+G EAIVV    S L      I     ++ V ++R+ L+  ++  +G       ++AVT
Sbjct: 81  AEGTEAIVVEEESSMLPVDLREIYEGIAVVRVPSSREALAKLSAARFGFPSREMRVIAVT 140

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++ A  ++ I + +G S   IG T    +   ++ + TTP    L      ++ +
Sbjct: 141 GTKGKTTTAHMIRSILESAGESCGLIGTTGVDYAGIHEETKNTTPESYELQDLFRRMADR 200

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELL 238
           G  +V +EASS G   +R D I    G FTN+  DHI    H+  + Y   K R+F +  
Sbjct: 201 GCGYVVMEASSQGFKLYRTDAIDFDYGIFTNIEPDHIGPNEHKDFEEYKYYKSRIFRQ-- 258

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISV 295
                 +I  D  Y++E++  A    CR+   G       + +     N          V
Sbjct: 259 --SRVGLINRDSPYAEELIAGAK---CRMYCFGIDKSADFMAEGIQAVNSPDFVGSEFQV 313

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G    D    LPG++ VYNA+ A  +C  IGI ++ +L+ L +L  V GR E    N  
Sbjct: 314 IGMAKLDVRLNLPGKYNVYNAMAAISVCSLIGIRNSAILKAL-RLIRVNGRMELAFKNDT 372

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAH +  +E +L+ +R     R++VVFGCGG+R + +R  MG+ A  LAD ++
Sbjct: 373 M-SVIVDYAHNAMGMENLLETLREYHPKRLVVVFGCGGNRSKERRYGMGETAARLADFSV 431

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T DN R E  E I ++I   +      + E  +R EAI  A++   K D++ V GKGHE
Sbjct: 432 LTADNSRFERTEDIISDIKSRLVPLGGRYAEIPDRREAIEYAMKNAEKGDIIAVIGKGHE 491

Query: 471 TVHIVTNGEKKMSVDCDIIRE 491
             + V NG +   +D ++I E
Sbjct: 492 DYNEV-NGARTHFLDREVIEE 511


>gi|262373645|ref|ZP_06066923.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
 gi|262311398|gb|EEY92484.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
          Length = 499

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 146/487 (29%), Positives = 235/487 (48%), Gaps = 34/487 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           W  +  N    DSR + +G IF+A+       K     F  +A+  GA A++  SA  L+
Sbjct: 17  WVSQPFNGFCLDSRKVASGQIFIALNSYSQPEKT--IEFAQKALDSGALAVISESALGLK 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQI 136
           +            V    R  +  +  +             +AVTGT+GK++++  V ++
Sbjct: 75  N----------EWVCPQVRYLMGEWQKQYLQASEPVQALRGVAVTGTNGKTTISRLVAEL 124

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               GL    +G T   I      +  TT   + L  AL   + QG   V++EASSHGL+
Sbjct: 125 ISSQGLGCAVMGTTGNGILPNLTPSTHTTLDALQLQTALHDYAQQGAKFVALEASSHGLE 184

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q RL+G  +    ++NL RDH+DYH T  AY  AK  LF+         +I  DD Y+  
Sbjct: 185 QGRLNGCDIEIAVYSNLSRDHLDYHGTLDAYAEAKALLFK--FATLKAVVINLDDQYASI 242

Query: 256 VMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           ++K A N   +      S+       H+  +    +    T+      +    PL G+F 
Sbjct: 243 MLKAAKNNPSQPKILTYSLTQTSADYHIADLQYRLSGASFTLISPVGSYAVNSPLLGQFN 302

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L +       G D A +++ + +L   PGR + +  + R     VDYAHT ++L  
Sbjct: 303 VENLLASLIAAEYAGFDLADLVKFVPELKGAPGRMQVIQDHER--LFVVDYAHTPDALIQ 360

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  ++   +G++  VFGCGGDRD+GKRP+M + ALD A+  ++T DNPR+E+PE+I A+
Sbjct: 361 VLTTLKRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDYANPVVLTSDNPRTENPEQIFAD 420

Query: 432 IIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           + HG+        E  +R EAI+  ++     D++V+AGKGHE    + +G +    D  
Sbjct: 421 MKHGVDFDGHQIDEIHDRREAIKFVVKQAQAGDIVVIAGKGHENYQEI-DGVRHWFDDVV 479

Query: 488 IIREILG 494
            ++  + 
Sbjct: 480 EVQSAIA 486


>gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 486

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 139/484 (28%), Positives = 222/484 (45%), Gaps = 18/484 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS       E +I  +  DSR  +A  ++  + G   DGH FI   I +G + IV S  
Sbjct: 2   KLSQMFENAPEIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSKP 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ 134
                    ++     + V+N  + L+  AS  YG       +  VTGT+GKS++ S ++
Sbjct: 62  VD------DMKKGVAYIQVENVNRTLNRVASMFYGHPSRKMKVFGVTGTNGKSTITSIIR 115

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +        +    + +         LTTP  + + K +  +   G+  V++E SSHGL
Sbjct: 116 DVYSHFAPCGYIGTISISYGEVTLPPSLTTPDAVLIHKTMKDMVEHGMQAVALEVSSHGL 175

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +  R+  +      F+NL  DH+D+H T + YF AK +LF  L  KE  A++ ADDAY  
Sbjct: 176 ELGRVQSVDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTNL-KKEGVAVLNADDAYVD 234

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++   A      V++ G      +  + +       + T+    + ++    L   + +Y
Sbjct: 235 QL---ADATEASVVTYGIDNHATYQAENIRIEKTGSRFTLVHGTERYEVSTNLVALYNIY 291

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A       GI     L +L  +  + GR E +    +   + VD+AHT + +E + 
Sbjct: 292 NLLGAVAAMAESGIPIEQQLPYLHDIRQIEGRMERID-EGQLFNVIVDFAHTPDGMEKVF 350

Query: 374 KNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +  + IT     II VFG  G RD  KR + G+IA    D  I+T+D+PR EDP +I  E
Sbjct: 351 EYAKDITEDGHSIIAVFGSAGKRDTKKRRVFGEIASRYCDSIILTEDDPRDEDPREIANE 410

Query: 432 IIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I  GI     I   +R  AIR AIE  N +D +++ GKG E       G +    D ++ 
Sbjct: 411 IKSGISDTNNIFIADRYAAIRQAIESANVKDTVLILGKGDEVFMYREFGREPWMGDHNVA 470

Query: 490 REIL 493
           R  +
Sbjct: 471 RHCI 474


>gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
 gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
          Length = 493

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 142/501 (28%), Positives = 222/501 (44%), Gaps = 35/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++                 Q  E +I  +  DSR  +   I+  + G   DGH F+
Sbjct: 8   MKLSEMF---------------EQAPEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
              IA+G +AIV +           +      + V+N  + L+  AS  Y        + 
Sbjct: 53  EDVIAKGVKAIVHAKPIE------HMHKGVAYIQVENVNRTLNRIASLFYQHPSRYMKVF 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GKS++ S +Q +          IG  +           LTTP PI + K+++ +
Sbjct: 107 GVTGTNGKSTITSIIQDVYSHF-HPCGYIGTIAIRYGDVELPPSLTTPDPILIHKSMADM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+   ++E SSHGL+  R+  +      F+NL  DH+D+H T + Y  AK +LF  L
Sbjct: 166 RAAGMEACALEVSSHGLELGRVMSVDFDIAIFSNLTYDHLDFHGTIENYLEAKKKLFTNL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
              +  A++  DDAY +     A     R+++ G +         +    +  Q T+   
Sbjct: 226 -KSDGVAVLNRDDAYYQ---AFADCTNGRLVTYGIKHDSDYRAMDIQIQTDGSQFTLLHH 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K +     L   + +YN L A       GI    +L +L  +  + GR E +    +  
Sbjct: 282 EKSYTIKTNLVAMYNIYNLLGAIAGMCEAGIAIEDMLPYLASIKQIEGRMERID-EGQLF 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + VD+AHT + LE + +  + IT     II VFG  G RD  KR + G+IA    D  I
Sbjct: 341 NVIVDFAHTPDGLEKVFEYAKDITKEGHSIIAVFGSAGKRDTKKRKVFGEIASKYCDSII 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +T+D+PR ED  +I  EI  GI     I   +R  AIR AIE     D +++ GKG E  
Sbjct: 401 LTEDDPRDEDAREIANEIKEGIKDTKNIFIEDRYNAIRQAIESAGAYDTVLILGKGDEVF 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
                G +    D ++ RE +
Sbjct: 461 MYREFGREPWLGDHNVARECI 481


>gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
 gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
          Length = 518

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 145/489 (29%), Positives = 233/489 (47%), Gaps = 30/489 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             K++ VS D+R + AG +F+A+ G+K DG  FI +  +  A AI+  +     D +   
Sbjct: 28  NIKVSGVSLDNRTLSAGSVFIAVPGDKVDGRAFIEKCDSATA-AILAEADTFGVDLTGA- 85

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
               P++ +   ++ +S  A+  YG    ++  + +TGT+GK++ A  + Q+  +   S 
Sbjct: 86  ---VPVVHIPQLKQKISRVAANFYGHPSRSLTIIGITGTNGKTTCAYLLAQLLSKLQFSC 142

Query: 145 FQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +G                 D  LTTPS +   K L+ L  Q V  V++E SSHGL Q 
Sbjct: 143 GMVGTLGFAKFDECGAPVNLTDTGLTTPSALDCQKILAELQQQ-VGAVAMEVSSHGLAQG 201

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+  +      FTNL RDH+DYH + + Y   K  LF     + S  +I ADDA    ++
Sbjct: 202 RVADVDFNGAIFTNLSRDHLDYHASLEEYAATKAALFAR--EELSFVVINADDAVGVNIL 259

Query: 258 KRAHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                      S    G+          I    +    ++    +       +    L G
Sbjct: 260 TNGVAPQAITYSYSLGGEQALVAQSENTIVAHSIEWGSSQTVAQLHTPWGAAELATGLVG 319

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + + N L       A+G     V+  ++ L   PGR + V ++ +   ++VDYAHT ++
Sbjct: 320 RYNLSNVLAVLTTACALGYPLVDVVAQVKTLQAAPGRLQRVNSSEQPLAVFVDYAHTPDA 379

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L  +   T G++ VV GCGG+RD GKRP+M ++A  LA+  ++T DNPR E+PE I
Sbjct: 380 LEKVLSEVAAYTQGKLWVVIGCGGNRDVGKRPLMAEVAERLANCVVLTSDNPRDENPELI 439

Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +++ G+      +   +R  AI  A+    + D +V+AGKGHE   +V  GEK    D
Sbjct: 440 LKDMLAGLKNKDAAMVIADRKNAIEYAVANAAENDAIVIAGKGHENYQLVK-GEKLPFDD 498

Query: 486 CDIIREILG 494
             I +E L 
Sbjct: 499 ALIAKEFLA 507


>gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 494

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 222/468 (47%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R + ++++DSR  ++G IFVA  G   D H F    I QG + IVV S   ++      
Sbjct: 20  DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVE------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V  T +  SL A  L+      +     TGT+GK+S+A+ +  I ++   +S
Sbjct: 74  -GDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DDA+S+ +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSEYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + + G           +          +     +++   P  G+F + N + A 
Sbjct: 250 SVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + GI    ++E ++ L  V GR E +  N     + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPN-LPIDLIIDYAHTADGMNKLIDAVKPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + +E+  G    
Sbjct: 369 VKRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPANDDPKMLTSELAKGATHD 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            ++E  +R E IR AIE+    D +V+A KG E   I+    K    D
Sbjct: 428 NYVEFEDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|238898850|ref|YP_002924532.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466610|gb|ACQ68384.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 502

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 153/475 (32%), Positives = 229/475 (48%), Gaps = 16/475 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL-QDFSATI 86
             I  ++  S  +  G +FVAIVG++ DG  +IPQA++QGA AI+  +   +  D S   
Sbjct: 28  ITIKGITLKSDEVTTGDLFVAIVGHETDGRHYIPQALSQGAGAILAEAEGVVNDDVSVDQ 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA---SFVQQICQRSGLS 143
               PI+ + N  ++LS  A   Y  HP + L + G +G +        + Q     G  
Sbjct: 88  IQGVPIVYLFNLNQYLSQLAGEFY-HHPASQLNLVGITGTNGKTTNTQLLAQWTMALGEV 146

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G     +      N+ TT S I + + LS + +   T  ++E SSH L QHR+  +
Sbjct: 147 SAVLGTLGNGLLRQLSSNQNTTASAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVAAL 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  F+NL RDH+DYH     Y  AK  LF  L  +    II  DD   +  +    N
Sbjct: 207 PFAASVFSNLSRDHLDYHGDMANYEIAKKSLF--LDHESKNHIINVDDEVGQRWLPELPN 264

Query: 263 AGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A        +  G QG ++  +K+    N   +         +   PL G F V N L+ 
Sbjct: 265 AVAVSTSHQIPSGLQGAWLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLT 324

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +A+      +L+   KL  +PGR E      R   + VDYAHT ++L+  L   R 
Sbjct: 325 LATLLALKYPLDALLKAASKLQPIPGRMEVFKKVGR-PTVIVDYAHTPDALKQALAASRM 383

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              G++  +FGCGGDRD+GKRP+MGKIA  LAD  ++TDDNPR+E P+ I A+I+ G+  
Sbjct: 384 HCQGKLWCLFGCGGDRDKGKRPLMGKIAETLADQMVITDDNPRTESPKMITADILKGVLK 443

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                   +R EAI   +     +DV+++AGKGHE    + + +   S    + R
Sbjct: 444 TDRASVIQDRTEAITHILNQAMPEDVILIAGKGHEVYQFIEHQKLDYSDRATVAR 498


>gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
          Length = 477

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 141/471 (29%), Positives = 238/471 (50%), Gaps = 12/471 (2%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            +++ +S+ ++ G IF+AIVG + DG  +I +AI   A A++  SA    ++S     N 
Sbjct: 13  KDLTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESA----NYSKNKAWNV 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   ++N  + ++  A   +    +   ++ VTGT+GK+SV  ++QQ       S+  IG
Sbjct: 69  PSFGIENLNQKIAEIAELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIG 128

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              +     +    TTP  I L + L+    +G+ + ++E SSH + Q+R+  I      
Sbjct: 129 TLGSGEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNRIANIVFDIKV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+ RDH+DYH+T   Y   K + F +   K    I+  DD   +E++     +   + 
Sbjct: 189 LTNVTRDHLDYHKTLANYQKIKKQFFSDGECKN--FILNIDDCIGQELLMEVDWSEKNLT 246

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +        +  + +     K    +  + K ++    + G   VYN L   G  +    
Sbjct: 247 TYAIDVQADLIAQNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQF 306

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG-GRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
               +++ +E L  +PGR E +  +  G  R+ +DYAHT ++L+ +L+++R I+   II+
Sbjct: 307 SIDQIIKAIELLKSIPGRNEIIQVSKEGWPRVVLDYAHTPDALKNVLQSLRAISDNEIIL 366

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNR 445
           +FGCGG+RD+GKR  M  +A + AD  IVT DNPR EDP +I  +I   I    +   +R
Sbjct: 367 LFGCGGNRDKGKRRKMALVANEYADKVIVTTDNPRYEDPLEIIKDITKNITTSHVVIESR 426

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +AI+ AI M+ +  +L++AGKGHE    +  G K    D DI    LG I
Sbjct: 427 EQAIKKAIGMMEENSILLIAGKGHEQHQEIK-GIKHPFSDKDIALLELGGI 476


>gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
 gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
          Length = 521

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 151/498 (30%), Positives = 238/498 (47%), Gaps = 23/498 (4%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             +L   L + P   R      +  ++ DSR ++ G I+ A+ G +  G  F  QA + G
Sbjct: 17  LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 76

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
           A A +   A + +     + +  P+LVV + R  +   A+R+YG   +++L   +TGTSG
Sbjct: 77  AVAALTDPAGAER----VLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ A  ++   + +G S+  IG   T I      +  TTP    L    + +  +GV  
Sbjct: 133 KTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDA 192

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +LF     +    
Sbjct: 193 VAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGV- 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFL 303
            +  DD Y + ++  A        + G+       + V         T +  +G  +   
Sbjct: 252 -VNHDDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVEIGPTDSTFTVVGPDGSRYPAR 310

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG F V N L A       G D  +  E +  +  VPGR E V    +     VDYA
Sbjct: 311 APLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVD-EGQPYLAVVDYA 369

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T DNPRSE
Sbjct: 370 HKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSE 429

Query: 424 DPEKIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DP  I A ++ G       E+G+         AI   +      D +++AGKGHE    V
Sbjct: 430 DPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHEQGQDV 489

Query: 476 TNGEKKMSVDCDIIREIL 493
            NG  +   D ++++E +
Sbjct: 490 -NGVVRPFDDREVLKEAI 506


>gi|257453538|ref|ZP_05618828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
 gi|257448996|gb|EEV23949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
          Length = 520

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 154/514 (29%), Positives = 244/514 (47%), Gaps = 42/514 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHL------FIPQA 63
            PE + QL + P+    +   +   DSR +  G +FV +      D         ++ Q 
Sbjct: 13  LPESVRQL-LNPV--MNQPFGQFVVDSRQVGQGDVFVLLKSQNATDSLDLEKVAGYLAQV 69

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENI---LA 119
             + A  ++     S       +    PI+ +   R FL  L  + L  +HP  +   +A
Sbjct: 70  SDK-AAFVLSEIDVSAIQSQFML----PIIYLPTIRDFLGSLIQTSLQQQHPTQLPAVIA 124

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++V+  V Q+  +SG+ +  +G     +      +  TT     L  A+   +
Sbjct: 125 VTGTNGKTTVSQLVAQLISQSGIKTAVMGTAGNGVLPNLTPSTHTTLEVFNLQHAIDDFA 184

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-EL 237
            QGV  +++EASSHGL Q RL G+ +    FTNL RDH+DYH     Y  AK RLF+   
Sbjct: 185 KQGVQALAIEASSHGLHQQRLQGVPINVAMFTNLSRDHLDYHTDMDDYAQAKARLFDKAH 244

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTIS- 294
            P  + AII  DD +S+ +++ A+ +   V +            K +        +TI+ 
Sbjct: 245 FPTLTHAIINLDDEFSELMIEAANASHLTVWTYSLTNDQADFFAKTILPSLQGGDLTIAL 304

Query: 295 ----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI------GIDSALVLEHLEKLHVVPG 344
                   +     PL G F V N L +     A+      G+  A +   +  L    G
Sbjct: 305 SKAVTPQGELTVNSPLLGRFNVANLLASIAGAFALSQSAAMGLSVAQIQAAVPTLRGATG 364

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + V + S      VDYAHT ++LE +L ++++  +G +  VFGCGGDRD+GKRP+M +
Sbjct: 365 RMDRVPSTSSCF--IVDYAHTPDALEQVLTSLKSHCTGELWAVFGCGGDRDKGKRPLMAQ 422

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQ 459
             L LAD  I+T DNPRSEDP  I  ++  G+        I + +R +AI  A++     
Sbjct: 423 AGLRLADKVILTADNPRSEDPNAILNDMQAGMTCQQHYQAIIEPDRQKAIEYAVQHAKPS 482

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D++V+AGKGHET   +  G +    D  +++  +
Sbjct: 483 DIVVIAGKGHETYQEIK-GVRHDFDDKVVVKNAI 515


>gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
 gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
          Length = 487

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 143/501 (28%), Positives = 237/501 (47%), Gaps = 31/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +I     + +       +   + +I  +  DSR ++ G +FVAI G + DGH FI
Sbjct: 1   MKLSQVI-----KCLKDSGEMDVFTNDPEIRGIEMDSRKVRKGSLFVAIKGFQTDGHHFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+  GA A+V   A  L         N P + V ++R  L   AS  Y +      I+
Sbjct: 56  GQAVENGAAAVVGEEALEL---------NVPYIKVTDSRTSLGKLASCFYDRPSRKHKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G +   +G  S  I++       TTP  + + K LS  
Sbjct: 107 GITGTNGKTTTAYILKHILETAGRTCSLLGTVSNIINNREYKTSNTTPDALQIQKMLSKS 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + V    +E SSH L+Q R +G++L  G FTNL  DH+DYH+    YF  K ++F  L
Sbjct: 167 LDEFV---VMEISSHALEQSRTEGLELDYGLFTNLAHDHLDYHENMDQYFLDKKKIFT-L 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      +I   +++ +++ +        ++ +G         K  AI+ +    + ++G
Sbjct: 223 LKDGGKGVINLYNSWGEKMAEDLQKEKIPLILLG--DDQCCSIKDVAINGRTVFILEMKG 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + F+  FPLPG   VYNA +A    + +GID+A +++ L     +PGRFE +   S G +
Sbjct: 281 QSFEIEFPLPGHHNVYNAAMAFLTGVDLGIDTADIIKALAGFPGIPGRFETIIHPS-GAK 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAHT ++ E  L+  R   + RI  ++G  G RDQ KR  M K +        +T 
Sbjct: 340 FVVDYAHTVDAFEYCLEAARQQGAERIFQIYGFRGGRDQSKRMDMIKASAKYCHKFYLTA 399

Query: 418 DNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           D+   E  +++ +++       G        +R  AI+ A     + D + + GKG E  
Sbjct: 400 DDLNDESEDEMISQLHRLNKEFGCGKGEVIPDRTLAIQKAWREAGESDWIFITGKGPEAY 459

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
                       D + ++ +L
Sbjct: 460 Q--KPFALPAESDLETLKLLL 478


>gi|158334577|ref|YP_001515749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
 gi|158304818|gb|ABW26435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
          Length = 499

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 149/503 (29%), Positives = 239/503 (47%), Gaps = 22/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFP---MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           KL+ L+     EL   L   P       + +I  ++++S  +Q G++F+ + G + DG  
Sbjct: 5   KLRTLL----AELSTHLWETPPTDHPALDAEITGLTTNSWAVQPGYLFIGMPGTRVDGGS 60

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           F   AI  GA A +VS      D          +L + +  +  +  A+  Y +  + + 
Sbjct: 61  FWKSAIEAGAAAALVSDQVDRADVGTH-----CVLALKDMPRACAEVAATFYDQPSQKLK 115

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALS 175
            + +TGT+GK++    ++ +   +   +   G   +           TTP  + L + LS
Sbjct: 116 LVGMTGTNGKTTTTHLIEYLLTTAQAPTALFGTLYARWPGHQVTAAHTTPFAVDLQQQLS 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              +       +E SSH L Q R+ G +     F+NL +DH+DYHQ  + YF AK  LF 
Sbjct: 176 DAVAAQCQFGVMEVSSHALAQKRVLGCQFTVAVFSNLTQDHLDYHQDMEDYFAAKALLFS 235

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   AII  DD Y + ++ +     C   S+       +   +       +  +  
Sbjct: 236 PDYLQ-GRAIINIDDVYGQRLVDQIGPNQCWTYSIEGPADL-YTSGLSYETAGVKGQLHT 293

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSR 354
                +F   L G+F V N L A G  + +G+    +   L +   VPGR + +  +  +
Sbjct: 294 PKGTVEFFSSLVGQFNVSNLLAAVGAVLELGLTLEQITPALAQFPGVPGRMQQITYSADQ 353

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  R    G++  VFGCGGDRD+ KRP+MG+IA  L+D AI
Sbjct: 354 DISVIVDYAHTPDSLENLLKAARPFVKGQMACVFGCGGDRDRTKRPLMGEIAARLSDQAI 413

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+EDP++I  +++ GIP     I + +R  AI+ AI      D +++AGKGHE 
Sbjct: 414 VTSDNPRTEDPQQILQDVLAGIPMEVKPIVEVDRRVAIQAAIAQAKPGDTILIAGKGHED 473

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+   EK    D +  +  L 
Sbjct: 474 YQILGT-EKIHFDDREEAQAALA 495


>gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
 gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
          Length = 504

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 150/478 (31%), Positives = 224/478 (46%), Gaps = 29/478 (6%)

Query: 36  DSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           DSR I A    +F A  G+  DG  +I +AI  GA+A+V       + F      N P L
Sbjct: 27  DSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVVFEK----EGFDWNPEWNVPHL 82

Query: 94  VVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            V   +   +  A+  Y    + +  +AVTGT+GK+S   ++ Q     G  +  IG   
Sbjct: 83  GVMGLKACAASVAAAYYDYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAVIGTLG 142

Query: 152 T------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                       ++   TTP  + L + L+ L  + V  V++EASS G+DQ RL+GI + 
Sbjct: 143 VTVFVNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASSIGIDQGRLNGIPID 202

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G FTN  RDH+DYH    +Y  AK +LF+   P    A++  DD   +E+   A     
Sbjct: 203 VGLFTNFTRDHLDYHHDMASYKAAKRKLFD--WPGLKHAVLNLDDPMGRELA-TALKTRI 259

Query: 266 RVLSVGYQGKFIH-----LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +     +             +    +  + +I            L G F   N L   G
Sbjct: 260 SLTGYTLENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRTRLIGRFNASNVLGVLG 319

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + +A GI     +  L  L    GR + +G       + +D+AHT +++E  L  +R + 
Sbjct: 320 VLLAAGIHWDDAVRTLGDLLPPAGRMQQMG-GKNAPLVVIDFAHTPDAMEKGLATLRHVA 378

Query: 381 ---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
              +G++  VFGCGGDRDQGKRP MG +  + AD  IVT DNPRSEDP++I  +II G+ 
Sbjct: 379 NERNGKLWCVFGCGGDRDQGKRPQMGSV-SETADFVIVTSDNPRSEDPKEIMKQIISGME 437

Query: 438 GFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +   +R  AI  A+   ++ DV+ +AGKGHET   +  G K    D D +   L 
Sbjct: 438 KEPQVYEDRAMAILQAVRQASQNDVIFLAGKGHETYQEIK-GVKLPFADADHVALALA 494


>gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 494

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 226/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               C V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 250 TVTPCEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
 gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
          Length = 494

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 219/468 (46%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L+      
Sbjct: 20  DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLK------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             N   +VV +T +  SL A  LY      +     TGT+GK+S+A+ +  I ++   +S
Sbjct: 74  -GNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     ++        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLTLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V + G   +   + K +       +         F    P  G F + N + A 
Sbjct: 250 SVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVRSPYVGRFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G +   ++  + +L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVKPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHE 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E IR AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|170696716|ref|ZP_02887831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
 gi|170138379|gb|EDT06592.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
          Length = 515

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 232/501 (46%), Gaps = 35/501 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           ++   E +N L     +        + +D+R + AG  F A   +  D   FI  A+ +G
Sbjct: 11  HRQIAEALNWLQAHLQRGA-----HLHADTRSLTAGDAFFAYAVDGADNRAFIDGALERG 65

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSG 125
           A A++V      + FS  I ++T  L V    +     AS  YG   +++L V  TGT+G
Sbjct: 66  AAAVLVQP----EGFSGAIDASTT-LAVPALNELAGSIASAWYGDPSDSMLTVGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+S + ++       G     IG   T +         TTP    L ++L+ L   G   
Sbjct: 121 KTSCSQWISAALTALGKRCAIIGTLGTGLPGQLVHTGFTTPDAPQLQRSLAQLRDAGAKA 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SSH L Q R++G       FTNL +DH+DYH T +AY  AK RLF    P+   A
Sbjct: 181 VAMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKARLFA--WPELRAA 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---------LKKVCAIHNKQQVTISV 295
           +I  DDA  + ++        R ++ G                   V A        +S 
Sbjct: 239 VINRDDAAGRRLLASTQG-HARTIAYGLDSAQQSAPQADASLLASNVRATPTGTAFHLST 297

Query: 296 -EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352
            +  + +      G F V N L   G  +A  I     L  L KL  V GR + +G    
Sbjct: 298 SDWGNAEVEVQTLGAFNVSNLLGVLGALLAAEIPFDAALAELAKLESVNGRMQRLGGRLQ 357

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +    + +DYAHT ++LE  L+ +R +     G +I +FGCGGDRD  KRP+MG IA  +
Sbjct: 358 NDEPLVVIDYAHTPDALEKTLEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKM 417

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  +VT DNPRSEDP+ I  +I  G+          +R  AI  AI    ++DV+V+AG
Sbjct: 418 ADGVVVTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQAIRGAAREDVIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCD 487
           KGHE    +  G+K+   D D
Sbjct: 478 KGHEATQEIM-GKKRAFSDQD 497


>gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
 gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
          Length = 508

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 151/502 (30%), Positives = 242/502 (48%), Gaps = 19/502 (3%)

Query: 9   KDFPELINQLSI-----FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           K F ELI    +        +    +I   + DSR I+  ++FVAI G K+DGH +I  A
Sbjct: 2   KYFKELIKNYKVSKESQLTKECLNTEIKGAAYDSRLIKKNYLFVAIKGLKDDGHKYIESA 61

Query: 64  IAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           I   A  I+  +    +          +   + V N R+ L+  +++L+ +  + I  + 
Sbjct: 62  INNKASIIIYDNTADKEFIKKLQDNHKDVHFVAVKNPRECLAYISAKLFYEPTKKINTIG 121

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT+GK++    ++ + + +   +  IG     I        LTTP  I L        
Sbjct: 122 ITGTNGKTTTTYLLKSVLEANKNKTTLIGTIKNMIGKTEIKTNLTTPESIDLESIFDKSL 181

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G++H+ +E+SS  L  +R D +      FTN+  DH+DYH   Q Y  AK++LF  L 
Sbjct: 182 KKGISHIVMESSSQALAMNRCDYLNYDTAIFTNITEDHLDYHVDMQNYLKAKLKLFSLLK 241

Query: 239 PKESP---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTIS 294
                   AI+  D    K++       G ++++ G   K  +  KV ++++K  +    
Sbjct: 242 ESSKKKKLAIVNIDTDNFKQISNYIKKLGIKMVTYGINEKADYYGKVISLNSKNTEYEFY 301

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +GK        + G F + N+L          +D    ++ + K+  V GRFE V    
Sbjct: 302 AKGKLISKVKLSMLGRFNILNSLSILAYVCENKLDIEKSIKAMRKVQ-VEGRFEIVTKEK 360

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDY+HT +SLE IL   + +   R+I VFGCGGDRD+ KRPIM +IA   ADIA
Sbjct: 361 HPFIVAVDYSHTPDSLENILVEAKKLNPNRVIAVFGCGGDRDRKKRPIMAEIAEKYADIA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DN R+ED  +I  +I  G     + +  +R EAI  A++   + D++++AGKGHET
Sbjct: 421 ILTTDNQRTEDINQIMNDIEKGFKNNNYKKIIDRKEAIFEAVKEAKENDIIIIAGKGHET 480

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I  +       D +  RE L
Sbjct: 481 YQIFPDKTIH-FDDREEAREAL 501


>gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 492

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 143/507 (28%), Positives = 240/507 (47%), Gaps = 37/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +  P  + Q S+      + +I+++  DSR    G +FV IVG + D H F 
Sbjct: 1   MKLEQLL-EGVPFTLAQGSL------DTEISDIIYDSRKAAPGLLFVCIVGTQRDSHEFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A+G  A+V+     L            ++ V+++R  ++L ++ L+G     +  +
Sbjct: 54  ADCAAKGVSALVIQHDIDLSALP-----GVTVVKVESSRYAMALMSANLFGNPSRKMTMI 108

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        ++ + + +G     IG          ++   TTP    L K     
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYYMGRHKETANTTPESYELQKTFREF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G     +E SS GL   R+ G+    G FTNL  DHI    H+T + Y + K +LF+
Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGVHYNVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---KVCAIHNKQQVT 292
                    ++  DD  ++ +++      C++++ G   +  + +   ++   H+   V 
Sbjct: 229 RC----DVGVVNIDDENTEALLE---GHTCKLITYGRAEQADYRETGFELLRTHDFLGVK 281

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V GKD  D    +PGEF VYNAL A  +   +G+    + + L K  VV GR E V  
Sbjct: 282 FHVTGKDEMDVKVNMPGEFSVYNALAALAVGKVLGLPDQAIHDGLGK-CVVKGRVELVPI 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + +   I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +AD
Sbjct: 341 SKK-FTILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMAD 399

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +I+T+DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V 
Sbjct: 400 FSILTEDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVI 459

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKGHET      G K   ++ +++ E 
Sbjct: 460 GKGHETYRD-REGVKTPFLERELLEEY 485


>gi|295091959|emb|CBK78066.1| UDP-N-acetylmuramyl-tripeptide synthetases [Clostridium cf.
           saccharolyticum K10]
          Length = 487

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 136/493 (27%), Positives = 220/493 (44%), Gaps = 26/493 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F + + +L    +Q   +    +V  DSR      +FV + G   D H FIP  +  G +
Sbjct: 2   FCDWLKELKYELVQGELDVPAEDVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV    S       I  +  ++ V+N R  L+L ++  +G     ++ +  T  K   
Sbjct: 62  ILVVEREVSE------IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTGTKGKT 115

Query: 130 A--SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                ++ I +  G     IG     I       + TTP    L +    +   G  ++ 
Sbjct: 116 TTTYMIKSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAGCEYMV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS     HR+DG+    G F N+  DHI    H   + Y + K    ++LL     A
Sbjct: 176 MEVSSQSYLMHRVDGLTFDYGLFLNISNDHIGPGEHADFEEYLHYK----KQLLKNCKTA 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDF 302
           I+  DD + +E+++ A  A     S+     F    ++ V        V   +   + + 
Sbjct: 232 IVNEDDEHFEEIIRGAQ-AKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEV 290

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG F   NAL +  LC  + +  A V   LE L  + GR E V  +S+   + VDY
Sbjct: 291 KVNVPGRFNAANALASVALCSFLDLPKAKVAHGLEHLK-IDGRMEIVYKSSKM-TVIVDY 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH + S+E +LK +R     R++ VFGCGG+R + +R  MG+I  +LAD  I+T+DN R 
Sbjct: 349 AHNAVSMESLLKTLRDYKPKRLVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDNSRY 408

Query: 423 EDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           ED   I  +I  G+      +IE  +R  AI  AI   +  D++ + GKGHE    +  G
Sbjct: 409 EDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMIAIIGKGHEDYQEIR-G 467

Query: 479 EKKMSVDCDIIRE 491
            +   +D  ++ E
Sbjct: 468 VRYPFLDRQVVLE 480


>gi|262380447|ref|ZP_06073601.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
 gi|262297893|gb|EEY85808.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
          Length = 499

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 143/488 (29%), Positives = 238/488 (48%), Gaps = 30/488 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           ++W  +  +    DSR +QAG IF+A+    +     +F   A++QGA  I+  S   + 
Sbjct: 15  VEWANQPFSGFCLDSRKVQAGQIFIALDSLSHSNKTRIFAENALSQGALGIISESDLGV- 73

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQI 136
                    T   V    R+++  +  +        +   ILAVTGT+GK++++  + ++
Sbjct: 74  ---------TTAWVCPQVRQWMGGWQKQYLQATQPVNSARILAVTGTNGKTTISRLIAEL 124

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                     +G T   I      +  TT   + L  AL   SSQG   V++EASSHGL+
Sbjct: 125 ISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGANFVALEASSHGLE 184

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q RLDG ++    ++NL RDH+DYH T  AY +AK  LF+        A+I  DD Y+  
Sbjct: 185 QGRLDGCEIEIAIYSNLSRDHLDYHGTLAAYADAKALLFK--FATLRSAVINLDDDYAPV 242

Query: 256 VMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +++ A     R      S+ +      +  +       +  +     ++    PL G+F 
Sbjct: 243 MLETAQANPARPKILTYSLQHPEADYRVSDIHYSLEGAKFKLIAPTGEYVVQSPLLGQFN 302

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N + +       G   + +L  + +L   PGR + +    R     VDYAHT ++L  
Sbjct: 303 IENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDVER--LFVVDYAHTPDALTQ 360

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  ++     ++  +FGCGGDRD+GKRP+M + AL+ AD  I+T DNPR+E PE+I A+
Sbjct: 361 VLVTLKRHVQNQLWAIFGCGGDRDRGKRPLMTQAALNDADPVILTSDNPRTESPEQIFAD 420

Query: 432 IIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           + +G+        E  +R EAI+ A++     D++V+AGKGHE    + +G +    D  
Sbjct: 421 MKNGVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKGHENYQEI-DGVRHWFDDVV 479

Query: 488 IIREILGL 495
            ++  L +
Sbjct: 480 EVQSALEV 487


>gi|119478641|ref|ZP_01618544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
 gi|119448418|gb|EAW29669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
          Length = 508

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 155/494 (31%), Positives = 235/494 (47%), Gaps = 19/494 (3%)

Query: 14  LINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++  L+    Q +   +++ + SDSR I AG +F+A+ G+  DG  +I QA+A GA A++
Sbjct: 12  ILGDLTAIEDQRYAAIELSGIQSDSRKIAAGNLFLAVAGHAVDGRDYIAQAVANGAAAVL 71

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
           V  A    D       N PI+ V+N    LS  A R Y      +  + VTGT+GK+S  
Sbjct: 72  VERAGHSAD--KLNYPNVPIIAVENLNLKLSEIAGRFYNNPSHELSIVGVTGTNGKTSCT 129

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               QI    G S   IG     I     +   TTP  I + K L+      +   ++E 
Sbjct: 130 QLYMQIANLLGRSCGVIGTLGAGIDGQLNEGLNTTPDAISIQKILAEWRDHELAVAAMEV 189

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL+Q R+  ++     FTNL RDH+DYH +  AY   K RLF +  P    A+I  D
Sbjct: 190 SSHGLEQGRVADVQFELALFTNLSRDHLDYHGSMLAYGETKARLFRQ--PGLKCAVINID 247

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDF 302
           D +   ++     A   V+  G +          + +  V    +     +  +    + 
Sbjct: 248 DHFGCALVDEMP-ATTDVIRYGVEPDARTNHSADVWVDNVRFHPSGVNARLHSDWGSVEI 306

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL GEF + N +         G   + +   + KL  VPGR E + +++    + VDY
Sbjct: 307 NSPLLGEFNLSNLVAVICCFGLQGFALSSIANVIPKLMTVPGRMERIVSSAD-ITVVVDY 365

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + LE  L  +R  T G++  VFGCGG+RD GKRP+MG +    AD  +VT DNPR+
Sbjct: 366 AHTPDGLEKALLAMRQHTDGKLWCVFGCGGNRDHGKRPLMGALVQRHADHVVVTSDNPRN 425

Query: 423 EDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           E   +I  EI+ G+    + + +R  AI+ AI      D +++AGKGHE   ++ +    
Sbjct: 426 ESAAEIIDEILGGVDRPSMVEEDRGLAIQFAIANALPGDCVLIAGKGHEDHQLIGDFRVP 485

Query: 482 MSVDCDIIREILGL 495
              D    R  L +
Sbjct: 486 -FSDITQARLALAV 498


>gi|283797828|ref|ZP_06346981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
 gi|291074516|gb|EFE11880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
          Length = 487

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 135/493 (27%), Positives = 219/493 (44%), Gaps = 26/493 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F + + +L    +Q   +    +V  DSR      +FV + G   D H FIP  +  G +
Sbjct: 2   FCDWLKELKYELVQGELDVPAEDVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV    S       I  +  ++ V+N R  L+L ++  +G     ++ +  T  K   
Sbjct: 62  ILVVEREVSE------IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTGTKGKT 115

Query: 130 A--SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                ++ I +  G     IG     I       + TTP    L +    +   G  ++ 
Sbjct: 116 TTTYMIKSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAGCEYMV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS     HR+DG+    G F N+  DHI    H   + Y + K    ++LL     A
Sbjct: 176 MEVSSQSYLMHRVDGLTFDYGLFLNISNDHIGPGEHADFEEYLHYK----KQLLKNCKTA 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDF 302
           I+  DD + +E+++ A  A     S+     F    ++ V        V   +   + + 
Sbjct: 232 IVNEDDEHFEEIIRGAQ-AKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEV 290

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG F   NAL +  LC  + +    V   LE L  + GR E V  +S+   + VDY
Sbjct: 291 KVNVPGRFNAANALASVALCSFLDLPKPKVAHGLEHLK-IDGRMEIVYKSSKM-TVIVDY 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH + S+E +LK +R     R++ VFGCGG+R + +R  MG+I  +LAD  I+T+DN R 
Sbjct: 349 AHNAVSMESLLKTLRDYKPKRLVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDNSRY 408

Query: 423 EDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           ED   I  +I  G+      +IE  +R  AI  AI   +  D++ + GKGHE    +  G
Sbjct: 409 EDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMIAIIGKGHEDYQEIR-G 467

Query: 479 EKKMSVDCDIIRE 491
            +   +D  ++ E
Sbjct: 468 VRYPFLDRQVVLE 480


>gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
          Length = 496

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 155/491 (31%), Positives = 228/491 (46%), Gaps = 17/491 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+      G  FI  A A+GA AI+  
Sbjct: 7   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVALARFGAHGLCFIEDACARGAVAILFE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                     ++      + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 67  PPAPQ---GVSVPDGA--IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + Q   R G+ S   G         Q      TTP  + L + L  L   G   V++E S
Sbjct: 122 LAQAWHRLGVRSATCGTLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVS 181

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF     +   A+I  DD
Sbjct: 182 SHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQGVQ--AAVINVDD 239

Query: 251 AYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +   ++        RV   + G+    +  + +          + +         PL G
Sbjct: 240 LFGLRLLHGLAKGVRRVGVSACGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMG 299

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++
Sbjct: 300 RFNVDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPMVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED + I
Sbjct: 360 LGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGI 419

Query: 429 RAEIIHGI--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G   P  ++   +R  AI  AI + +  DV+++AGKGHE    V  G +    D
Sbjct: 420 VADILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHERYQEVA-GVRHPFDD 478

Query: 486 CDIIREILGLI 496
            ++   +L  +
Sbjct: 479 TEVAMRVLAAM 489


>gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
 gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
          Length = 494

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 223/468 (47%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R + ++++DSR  ++G IFVA  G   D H F    I QG + IVV S   ++      
Sbjct: 20  DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVE------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V  T +  SL A  L+      +     TGT+GK+S+A+ +  I ++   +S
Sbjct: 74  -GDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DDA+S+ +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSEYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + + G           +          +     +++   P  G+F + N + A 
Sbjct: 250 SVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + GI    ++E ++ L  V GR E +  N     + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPN-LPIDLIIDYAHTADGMNKLIDAVKPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + +E+  G    
Sbjct: 369 VKRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPANDDPKMLTSELAKGATHD 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            ++E  +R E IR AIE+   +D +V+A KG E   I+    K    D
Sbjct: 428 NYVEFEDRAEGIRHAIEVAEPEDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
 gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
          Length = 521

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 142/522 (27%), Positives = 236/522 (45%), Gaps = 46/522 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DL+       +   +I P    +  I  ++ DSR ++ GW+FVAI G   DGH ++  
Sbjct: 5   LRDLL-------VGLETIGPPTDLDIPILGLAYDSRQVRPGWLFVAIRGFHVDGHQYVDH 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+     A  V+    ++ ++       P++ V ++R  L+  A+  Y  HP   L   G
Sbjct: 58  ALK----AGAVAVVVDVRHWNGPTTLGVPLITVADSRVALAPLAANFYA-HPAAHLRTIG 112

Query: 123 TSGKSSVA---SFVQQICQRSGLSSFQIGPT-STISSFAQDN--RLTTPSPIYLAKALSY 176
            +G    +     V Q+ +  GL +  I      I +    N  R +TP    +   L  
Sbjct: 113 ITGTKGKSTTTDLVSQVLEGGGLRTGMISTVDFKIGARRWPNTTRQSTPEAPEIQGLLHE 172

Query: 177 LSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   G ++  +E++SH L  +  RL  +      F N+  +H+DYH + + Y   K RLF
Sbjct: 173 MLDAGCSYAVLESTSHALSPYWNRLGNVYFDVAVFLNVTHEHLDYHGSFEQYRADKARLF 232

Query: 235 EELLPKESPAII--------------YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHL 279
             L   +S A                 ADD   +  +  A +   R L+ G +    +  
Sbjct: 233 AMLGEGQSEASCHQGDRVERPVWAIANADDPNCQFFLDAAPS-YARRLTFGVRAAADVRA 291

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
             V +  +   + ++    +      +PG F V NAL A  + ++ G+     +  LE +
Sbjct: 292 HAVASGPSGSHLRVTTPWGEAALHLQIPGSFNVSNALAALSVALSQGVPLERAITALEAV 351

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             + GR + +    +   + VDYAH  +S E +L  +R +T GR+I VFG  G+RD+ KR
Sbjct: 352 PGIRGRMQPIHL-GQPFDVIVDYAHNPDSFEQVLSMLRPLTKGRMIAVFGSAGERDRAKR 410

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRT 451
            + G+IA   AD+ ++TD++PR EDP  I AEI+ G          G+    NR EAI  
Sbjct: 411 SVQGEIAGRYADLLVLTDEDPRGEDPAAIIAEIVEGAERAGKRVGDGYRCIPNRSEAIHV 470

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AI      D++++ GKGHE   I  +G      + D+  + L
Sbjct: 471 AIAAAQPGDLVLLLGKGHEGSIIYASGAIPW-DEADVACQAL 511


>gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 458

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 141/464 (30%), Positives = 229/464 (49%), Gaps = 23/464 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           ++SR ++ G  F+AI     DGH +I +AIA GA  I+        +           ++
Sbjct: 7   TNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGATKIIAEHGSYKVET----------II 56

Query: 95  VDNTRKFLS--LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           V++TR++L   L+ +         ++ +TGT+GK++      QI +    +   +G    
Sbjct: 57  VESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGF 116

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 +    TTP    L   L      GV +  +E SSH LD+ R+ G++    +FTN
Sbjct: 117 YYGDAKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFDEVAFTN 176

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH+T + Y NAK  LF +    +  AII  DD + +  +  ++N       +G
Sbjct: 177 LTQDHLDYHKTLENYANAKRILFTK-TRNDKIAIINGDDEHYQHFVLESNNNII----IG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                + + ++   H            ++     + G + +YN L+A  L   +G+    
Sbjct: 232 QHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIED 291

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L   +KL    GR E +   +    I+VDYAHT +++  +LK+     +GRII + GCG
Sbjct: 292 ILALNDKLKAPAGRMELLKYGTN--SIFVDYAHTPDAVINVLKSAEEFKNGRIITIIGCG 349

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAI 449
           GDRD  KRPIMGK AL+ +D  I T DNPRSEDP+ I  +I +G+ G  F  + +R +AI
Sbjct: 350 GDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEIEVDRQKAI 409

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              ++ L   D+L++ GKGHE   I   G K    D + + + +
Sbjct: 410 IKGMQQLKHNDILMILGKGHEDYQITKTG-KHHFSDQEEVMKYI 452


>gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Staphylococcus epidermidis FRI909]
          Length = 494

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 219/468 (46%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L+      
Sbjct: 20  DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLK------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             N   +VV +T +  SL A  LY      +     TGT+GK+S+A+ +  I ++   +S
Sbjct: 74  -GNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     ++        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V + G   +   + K +       +         F    P  G F + N + A 
Sbjct: 250 SVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFFTPFGSFPVRSPYVGRFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G +   ++  + +L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHE 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E IR AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii L2-6]
          Length = 492

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 150/507 (29%), Positives = 232/507 (45%), Gaps = 37/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+      L+           E  I ++  DSR    G +FV IVG + D H + 
Sbjct: 1   MKLEQLLEGVSYTLV-------QGSLELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            Q +A G  A+VV     L            +L V+++R  L+L +  L+G     +  +
Sbjct: 54  AQCVADGVTALVVQHDIDLSTVP-----GAAVLKVESSRYALALMSGNLFGNPSRRMTMI 108

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        ++ + + +G     IG          Q+   TTP    L K     
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYFLGHHQETANTTPESYELQKTFREF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G     +E SS GL   R+ GI    G FTNL  DHI    H+T + Y + K +LF+
Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGIHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---IHNKQQVT 292
                 +  ++  DD  ++ +++      C++++ G   K  +          H+   V 
Sbjct: 229 RC----TTGVVNIDDENTEALLE---GHTCKLVTYGCSEKADYRAGTYQLLRTHDFLGVR 281

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V GKD  D    +PGEF VYNAL A  +   +G+    + E L +  VV GR E V  
Sbjct: 282 FHVSGKDDMDVKVNMPGEFSVYNALAALTVGKVLGLPDEAIHEGLGR-CVVKGRVELVPI 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            SR   I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +AD
Sbjct: 341 -SRKFTILLDYAHNEVSTESLLTTLRAYEPHRLVVVFGCGGNRSKLRRYGMGEICARMAD 399

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +I+T+DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V 
Sbjct: 400 FSILTEDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVI 459

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKGHET      G K   ++ +++ E 
Sbjct: 460 GKGHETYRD-REGVKTPFLERELLEEY 485


>gi|167768013|ref|ZP_02440066.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|317498393|ref|ZP_07956688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167710342|gb|EDS20921.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|291561015|emb|CBL39815.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SSC/2]
 gi|316894287|gb|EFV16474.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 485

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 148/497 (29%), Positives = 249/497 (50%), Gaps = 31/497 (6%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+ +     +Q   + +I+ +  DSR I+ G +FV I G   DGH F+ QA   GA 
Sbjct: 3   LKELLERSEYTLVQGSEDVEISTLVYDSRKIEKGSVFVCISGAAFDGHKFVAQAAELGAA 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+VV            +  N  ++  DNTR  L+  ++  +G   E +  + +TGT GK+
Sbjct: 63  AVVVEKDVE-------VPENLTVIKFDNTRLALAEMSAAYFGYPAEELTTIGITGTKGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ + + +G  +  IG   T I      +  TTP    + ++   ++  G+ +V 
Sbjct: 116 TTTYMIRAVLEHAGQKTGLIGTIETIIGDERIPSVNTTPESYIVQESFRKMADAGLKNVV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS  L  HR  G +   G FTNL  DHI    H+    Y + K  LF++        
Sbjct: 176 MEVSSQALMLHRTSGFEFDYGIFTNLAEDHIGENEHKDMDDYIHCKSLLFKQC----KQG 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK---DF 300
           I+  DD Y + ++K   +  C + + G +    ++ + +  I     + ++ + K   ++
Sbjct: 232 IVNGDDDYVERIIK---DHTCAIETYGMKDTNDVYAENITRIQEPGYLGVAYDLKGKQEY 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    +PG+F VYN+L A  LC  +GI    VL  L  +  V GR E + T      + +
Sbjct: 289 NVHVDIPGDFTVYNSLAAISLCRHMGIVKEDVLSALNTIQ-VKGRLEIIKTPGD-YTLMI 346

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH + SLE +L  IR     +I  +FGCGG+R + +R  MG+++  LAD+ +VT DNP
Sbjct: 347 DYAHNAMSLESLLTTIRKYNPKKIYCLFGCGGNRAKARRYEMGEVSSKLADLTVVTSDNP 406

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R+E+P  I  +I+ G+      ++   +R EAI+  +E     D++++AGKGHE    + 
Sbjct: 407 RNEEPMDIINDILIGVHKADGEYVTIPDRKEAIKYCMEHAGAGDIVILAGKGHEDYQEIK 466

Query: 477 NGEKKMSVDCDIIREIL 493
            G K    + D+I+EI+
Sbjct: 467 -GVKHHMDERDLIQEII 482


>gi|240168222|ref|ZP_04746881.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium kansasii ATCC 12478]
          Length = 528

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 159/493 (32%), Positives = 242/493 (49%), Gaps = 24/493 (4%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           +  + +P  +R+ +I  V+  ++ +Q G +F A+ G+   G     +AI +GA A++  +
Sbjct: 31  DGAADYPETFRDVQITGVTLRAQDVQPGDLFAALAGSATHGARHAGEAIERGAVAVLTDA 90

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
                       ++ P+LV    R  L   A+ +YG+  E +  + +TGTSGK++    V
Sbjct: 91  DGVAA--MGAHAASVPVLVHPAPRSVLGGLAATVYGRPSERLTVVGITGTSGKTTTTYLV 148

Query: 134 QQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +   +  G  +  IG     I      + LTTP    L   L+ +S +GV  V +E SSH
Sbjct: 149 EAGLRAGGRVAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAEMSERGVDTVVMEVSSH 208

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDA 251
            L   R+DG +   G FTNL RDH+D+H T + YF AK  LF+     +    ++  DD 
Sbjct: 209 ALALGRVDGTRFAVGGFTNLSRDHLDFHPTMEDYFEAKALLFDPASALRAGTVVVCVDDD 268

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVT-ISVEGKDFDFLFPLP 307
             + + +RA +A    ++V  + +  H + V  +      Q+ T I   G        LP
Sbjct: 269 AGRAMAERAGDA----ITVSARDRAAHWRAVDVVPMGAAGQEFTAIDPAGVQHRVRIGLP 324

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G + V N L+A  +  +IG+        L +   VPGR E V    +     VDYAH   
Sbjct: 325 GGYNVANCLLALAILDSIGVSPEQAAPGLRQAR-VPGRLEQVD-RGQDFLALVDYAHKPG 382

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +L  + +    R+ VVFG GG+RD GKR  MG +A +LAD+ +VTDDNPR EDP  
Sbjct: 383 ALRAVLTTLTS-PDRRLAVVFGAGGERDPGKRAPMGAVAAELADLVVVTDDNPRGEDPAA 441

Query: 428 IRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           IR EI+       G    +E  +R +AIR A+      DV++VAGKGHET      GE +
Sbjct: 442 IRREILAGAAAAGGTAEVVEVADRRDAIRHAVAWAGPGDVVLVAGKGHETGQ-RGAGEVR 500

Query: 482 MSVDCDIIREILG 494
              D   + E L 
Sbjct: 501 PFDDRVELAEALA 513


>gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii
           L2-63]
          Length = 488

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 143/508 (28%), Positives = 242/508 (47%), Gaps = 37/508 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+          +          +I+++  DSR ++ G  FV + G   DGH + 
Sbjct: 1   MKLKDLLIN--------VEYTVQGNLNTEISDIIYDSRKVEKGTAFVCLKGYTSDGHRYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ +GA A+V+S +   +     + S+  ++ V++TR  LSL +   +G   + +  +
Sbjct: 53  KSAVEKGASALVISDSLDFE-----VPSDVAVVKVEDTRYALSLMSIEFFGHPEDELYTV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
           A+TGT GK++  + V +I + +G+ +  IG    +          TTP    + K++  +
Sbjct: 108 AITGTKGKTTTTAMVAEIFEHAGIKTGTIGTLGVVYGGETHKTDNTTPESYIIQKSMRDM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            + G   + +EASS GL   RL G+    G FTN   DHI    H+    Y   K  LF 
Sbjct: 168 INAGCKAMVIEASSIGLKHSRLAGMTFDVGIFTNFSDDHIGGVEHKDLAEYLYCKSLLFR 227

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---T 292
           +       A    DD   K++ K    +   VL+ G+        K   + ++       
Sbjct: 228 QC----KFAAANIDDPAWKDITKDFKGS---VLTYGFADNADLKGKNAHLLSENGFVGVH 280

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVG 350
              EG K+      +PG+F  YNAL A         I+  ++++ L K+  V GR E V 
Sbjct: 281 FETEGIKNLSVDVDIPGKFNAYNALAAISAVSFFDEIEDQMIIDAL-KVAKVKGRVERVP 339

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + +DYAH + S+E +L+ +R     R+I +FG GG+R + +R  MG+ +  L+
Sbjct: 340 VPYN-YTLIIDYAHNALSMENVLETLRQYNPHRLITMFGAGGNRPKVRRYEMGETSGRLS 398

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+++VT+DN R ED   I  +I  G+      ++   NR +AI+  ++     D++V+AG
Sbjct: 399 DLSVVTEDNSRFEDVMDIIEDIKTGLAKTDGKYVVVPNRRDAIKYCMDNAEDGDIIVLAG 458

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHE    +  G K    + +II +IL 
Sbjct: 459 KGHEDYQEIK-GVKYHMDEREIIADILN 485


>gi|33519611|ref|NP_878443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
 gi|46576955|sp|Q7VQJ2|MURE_BLOFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33517274|emb|CAD83658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
          Length = 499

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 156/496 (31%), Positives = 230/496 (46%), Gaps = 21/496 (4%)

Query: 15  INQLSIFPMQWRERKI---NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +++L +  +     KI     +  DSR+I  G +F+AI G   DG L I  AI  GA AI
Sbjct: 7   LHELIVPWISGINVKIPYLTGLELDSRNINFGNLFIAIQGYNTDGRLHIDDAINNGAVAI 66

Query: 72  VVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
           +  S      F   I +N    PI+  +   K +S  A R Y        ++ VTGT+GK
Sbjct: 67  LSESYNKSTFFIKKIVNNVEVIPIIYFNQLNKCISNIAGRFYDHPSLCLKLIGVTGTNGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   +       G  S  +G     + S    +  TT S I   K L      GVT V
Sbjct: 127 TTITHLLTNWTSLLGERSAVMGTLGNGVLSDINPSCCTTCSAIETQKILKQFVQSGVTFV 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSHGLDQ+R+D +      F+N+  DH+DYH     Y  AK RLF EL  K    +
Sbjct: 187 AMEISSHGLDQYRVDSLYFDVAIFSNISNDHLDYHNNINQYRMAKWRLFNELRVKN--YV 244

Query: 246 IYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           I  DD      +    NA    +       + G++I L K        ++       +  
Sbjct: 245 INVDDCVGYRWLLSLSNAVAVTIKNNLPRSWSGRWIALVKADYYLYGTKIVFKSSWGNGF 304

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L GE  V N L+A G  + +G     +L    KL+ V GR E +   +    + VD
Sbjct: 305 IHSQLLGEVNVSNILLALGALLIMGYSLKSLLYTGSKLYPVCGRLEVLSCLNH-PTVIVD 363

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAHT ++L+ IL   + +   GR+  +FGCGG+RD+ KR +MG IA   +D  I+T+DNP
Sbjct: 364 YAHTPDALKKILIFAKHLCNKGRLWCIFGCGGNRDRSKRSLMGVIANRYSDYVIITNDNP 423

Query: 421 RSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R EDP+ I  +II  I    +     +R+ AI   +      D +++ GKGHE    +  
Sbjct: 424 RVEDPKLIIDDIICKIRNSEKLKIIEDRVYAINMVVSKACSDDFVLILGKGHEKYQNIGL 483

Query: 478 GEKKMSVDCDIIREIL 493
                S D DI++ I 
Sbjct: 484 NYISHS-DQDIVKSIF 498


>gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis RP62A]
 gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis RP62A]
 gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU028]
 gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 494

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 219/468 (46%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L+      
Sbjct: 20  DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELK------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             N   +VV +T +  SL A  LY      +     TGT+GK+S+A+ +  I ++   +S
Sbjct: 74  -GNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     ++        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V + G   +   + K +       +         F    P  G F + N + A 
Sbjct: 250 SVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G +   ++  + +L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHN 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E IR AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 506

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 148/494 (29%), Positives = 231/494 (46%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL   P Q +  ++  ++ DSR ++ G ++ A+ G +  G  F+ QA+  GA A
Sbjct: 17  LAELADQLGAEPPQ-KAAQVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++     + +       +  P+LVV++ R  +   A+ +YG    ++L   +TGTSGK++
Sbjct: 76  VLTDPTGAER----AAATGLPVLVVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   +    +         I      +  TTP    L    + +  +GV  V++E
Sbjct: 132 TAYLVEGGLKGVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG     G FTNL  +H+++H   + YF AK +LF     +     +  
Sbjct: 192 VSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTPERSRLGV--VNL 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD Y + ++K A        + G+         V         T I  + +      PLP
Sbjct: 250 DDEYGRRLVKEATVPVVTFSAEGHPDADWRAADVEVGPMDSTFTVIGPKDERISARSPLP 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D     + +  +  VPGR E V    +     VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQTAADGVAAVPGVPGRLERVDA-GQPYLAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +LK +R +T G++ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLKALRKVTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                +R  AI  A+      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRQVLREAI 501


>gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
 gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
          Length = 500

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 144/477 (30%), Positives = 248/477 (51%), Gaps = 20/477 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++  +S +++   IF+A  G++ DGH FI  A  +GA  I+      +         +
Sbjct: 28  IADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKGASLIIAQDEEKIP-----TNDS 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++V++ +K  +  + +L+   P+   IL VTGT+GKS+  S V  I Q+S   S  I
Sbjct: 83  LQYIIVEDIKKAAADLSHKLFDISPDDFKILGVTGTNGKSTTVSLVHHILQKSDKDSTLI 142

Query: 148 GP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                       ++   TTPS + L+K L       +  +++E SSH + Q R++G+K  
Sbjct: 143 STVEIKIKDEVVKEPYNTTPSILELSKILKNSKENNIEFINMEVSSHAIHQRRIEGVKFD 202

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             SFTN+ RDH+DYH+  + Y + K+ L    L  E   +I  D     + +K       
Sbjct: 203 IISFTNITRDHLDYHKDFEEYKSIKLSLM-NYLKDEGKIVINLDRLNKDDFVKSGKE--- 258

Query: 266 RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            V++ G++      ++       + + TI   E K ++    L G+F VYN   A  +  
Sbjct: 259 -VITYGFKKNADFVIENYEQTLQQMKFTIKTKEHKSYEIRSHLIGKFNVYNITNAFVIAT 317

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             G++   ++  +     V GRF+ V G+ S G    +D+AHT ++L  +LK   +IT G
Sbjct: 318 LFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFFAVIDFAHTPDALNEVLKTASSITEG 377

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439
           RII VFG GG+ D+GKR +MG++  + +D+ ++T+D+P+ EDP++I  ++  GI     F
Sbjct: 378 RIITVFGAGGNADKGKRKLMGQVVSEHSDVIVLTNDDPKDEDPDQIIEDVSKGIDQDKHF 437

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           I   +R  AI TA+   NK D++++AG+GHE   +  NG+K    D ++ ++++  I
Sbjct: 438 IVIPDRETAIDTALRFANKGDIVIIAGRGHEKYQLFANGKKVKFNDYEVTKKLIDKI 494


>gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 483

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 140/505 (27%), Positives = 250/505 (49%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR +  G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLRNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+A GA A++ S              +   ++ ++     +  A+R Y    +  +++
Sbjct: 54  SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSKHLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+++ +RSG+ +  IG    I       +  TTP  I L K  + +
Sbjct: 106 GITGTNGKTTVSCLVRELMERSGIRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   +E SS G+   R+   + +AG  TN+  DH+D+H + + Y  AK + F  L
Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
            P++  A++  D  Y+   +     +  R +S   +Q       ++    +     I  +
Sbjct: 226 -PEKGIAVVNLDCEYAPSFLN---GSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQ 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK F     L GE  VYN L +  +    +G D A ++  +  L    GR + +      
Sbjct: 282 GKVFPCETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLG--P 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             +Y+DYAHT ++L+ + + +  +    GR+I+VFGCGGDRD+ KRP+M K+  +    +
Sbjct: 340 FPVYIDYAHTPDALDNVCRILLQLLPKYGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFS 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE 
Sbjct: 399 FVTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEG 458

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I  +    +  D +++ E L  +
Sbjct: 459 YQIFKHQTI-VFDDREVVCEALAAL 482


>gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 494

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA2]
          Length = 499

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 233/476 (48%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +     I  DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGV--INVDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++   +Q     +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L     VPGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                I+ G R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483


>gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL074PA1]
 gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA2]
 gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA1]
 gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA2]
 gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA1]
 gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA2]
 gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA1]
 gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA2]
 gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL007PA1]
 gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL056PA1]
 gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA3]
 gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA2]
 gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA1]
 gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA1]
 gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL045PA1]
 gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA2]
 gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA1]
 gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA2]
 gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA3]
 gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL078PA1]
 gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA2]
 gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA3]
 gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA1]
 gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL038PA1]
 gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA2]
 gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL097PA1]
 gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA3]
 gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA2]
 gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA2]
 gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA1]
 gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL020PA1]
 gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL099PA1]
          Length = 499

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 233/476 (48%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +     I  DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGV--INVDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++   +Q     +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L     VPGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                I+ G R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483


>gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
 gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
          Length = 1035

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 157/493 (31%), Positives = 238/493 (48%), Gaps = 18/493 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  LI +D  EL    ++  +    R I  V  DSR +  G +FVA+ G + DGH ++
Sbjct: 1   MKLATLI-QDLAELA---AVRVVGDDARDIRAVRDDSRRVGPGDLFVAVRGARTDGHAYL 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P  I  GA A+VV  A         + +    ++V    + L + A+R+ G+  E   ++
Sbjct: 57  PAVIDAGAAAVVVERAIE----DPALAARVTQVIVPEGARALGVLAARMAGRPGERMRLV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ I +    +   IG  S    +       TTP+ + L +AL  +
Sbjct: 113 GITGTNGKTTCSYLIESILRAHDATCGVIGTVSYRYGAREVPAPYTTPTALILQEALGEM 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +   TH  +E SS  L   RL G  +   +FTN  +DH+D H +  AY  AK RLF + 
Sbjct: 173 VAASCTHAVLEVSSAALAMERLSGTTVEVAAFTNFTQDHLDVHGSMDAYRAAKERLFRDH 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISV 295
           L +   A+I  DD  +  ++  A       +S   G       ++ + A      +T   
Sbjct: 233 LAENGVAVIDVDDKAAPHMIAAAGERRVVRVSARPGATAADAEVRVLAAETTIAGITAEF 292

Query: 296 EGKDFDFLFPLPG---EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 F    P     + V N  VA  +C A+ +  A +   +E +  VPGR E V  N
Sbjct: 293 ATPRGSFTLRAPALLGHYNVANLAVAVAVCDALDVPHATIARGIEAMSGVPGRVERVA-N 351

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I VDYAHT ++L  +L  +R +T  R++ VFGCGGDRD  KRP MG  A   AD+
Sbjct: 352 DAGLDILVDYAHTPDALASVLAALRPLTQRRLLCVFGCGGDRDADKRPKMGAAAAAGADL 411

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +VT DNPRSE P  I  +I+ G+P  F    +R   I  A+      D++++AGKGHET
Sbjct: 412 VVVTSDNPRSEAPRAIIDQILPGVPAPFFVHSDRRVGIAAAVFEAVPGDIVLIAGKGHET 471

Query: 472 VHIVTNGEKKMSV 484
             I+ +       
Sbjct: 472 YQILGDDTVHFDD 484



 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 80/508 (15%), Positives = 149/508 (29%), Gaps = 93/508 (18%)

Query: 31   NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            + V  D R +  G ++VAI G + DGH F  QA   GA A++V    + +D +A      
Sbjct: 522  SRVVIDGRQVAPGDLYVAIRGEQHDGHAFCEQAANAGACALMVERGRAPRD-AAGNALKL 580

Query: 91   PILVVDNTRKFLSLFASRLYGKHPE--------------------------NILAVTGTS 124
             ++ VD+TR  L   A     +  E                           ++ +TG++
Sbjct: 581  AVIEVDDTRLALGSVARWHRARWGELPVYGCPNTGGDRDGDNGDERARAAKPVVGITGSA 640

Query: 125  GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
            GK++    +            +    +T +SF                 L+ +   G   
Sbjct: 641  GKTTTKELIAAALS------ARYAVHATRASF-------NNETGVPLTLLALMPHHGAAV 687

Query: 185  VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            + +     G   +  +       +  N G  HI    + +     K  +F  L  +   A
Sbjct: 688  IEMGMRGLGQIAYLAELSAPTVAAVLNAGTAHIGVVGSAEGIVRGKSEIFAAL-GEGGVA 746

Query: 245  IIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHN--------------- 287
            +   DD    E  + A       + L  G +       +VCA+                 
Sbjct: 747  VYPGDDERLSEYARAAGRVLRFTQALPSGDEVPTPAPAEVCAVAYAPAHRAGPGAATDAA 806

Query: 288  -----------------KQQVTISV------EGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                                + + V      + +       L G     NA  A    IA
Sbjct: 807  TDAATGAATGAATKVLVGADIDLRVQLSPADDARVVRVPLALVGRHNAANAACALACAIA 866

Query: 325  IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSG 382
             G+ +      + +      R +      R   +   Y     S+   L  +  +    G
Sbjct: 867  AGVSAEDAAAAMGRARPPALRGQVRELAGRRVLV-DCYNANPASMRAALATLTELARADG 925

Query: 383  RIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
               +          D        +G++A DL    I   ++  +        + +  +  
Sbjct: 926  SRALAVLGDMLELGDEAARAHAEVGQMAGDLDVAVIALGEHAAALAGAGAPGDDLARVAA 985

Query: 439  FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +     EA    +      D ++V G
Sbjct: 986  SPD-----EAAAFLLSHTAPGDWVLVKG 1008


>gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 494

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 219/468 (46%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L+      
Sbjct: 20  DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELK------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             N   +VV +T +  SL A  LY      +     TGT+GK+S+A+ +  I ++   +S
Sbjct: 74  -GNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     ++        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V + G   +   + K +       +         F    P  G F + N + A 
Sbjct: 250 SVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G +   ++  + +L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHN 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E IR AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276]
 gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276s]
 gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9768]
 gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11222]
 gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11074]
 gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9301]
 gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-EC]
 gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-LC]
          Length = 483

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 139/505 (27%), Positives = 248/505 (49%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR +  G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLQNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+A GA A++ S              +   ++ ++     +  A+R Y       +++
Sbjct: 54  SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+++ +RSG  +  IG    I       +  TTP  I L K  + +
Sbjct: 106 GITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   +E SS G+   R+   + +AG  TN+  DH+D+H + + Y  AK + F  L
Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
            P++  A++  D  Y+   +     +  R +S   +Q       ++    +     I  +
Sbjct: 226 -PEKGIAVVNLDCEYAPSFLN---GSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQ 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+ F     L GE  VYN L +  +    +G D A ++  +  L    GR + +      
Sbjct: 282 GQVFPCETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLG--P 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             +Y+DYAHT ++L+ + + +  +    GR+I+VFGCGGDRD+ KRP+M K+  +    +
Sbjct: 340 FPVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFS 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE 
Sbjct: 399 FVTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEG 458

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I  +    +  D +++ E L  +
Sbjct: 459 YQIFKHQTI-VFDDREVVCEALAAL 482


>gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70]
 gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70s]
 gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis Sweden2]
 gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/150]
 gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/11023]
          Length = 483

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 140/505 (27%), Positives = 248/505 (49%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR +  G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLRNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+A GA A++ S              +   ++ ++     +  A+R Y       +++
Sbjct: 54  SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+++ +RSG  +  IG    I       +  TTP  I L K  + +
Sbjct: 106 GITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   +E SS G+   R+   + +AG  TN+  DH+D+H + + Y  AK + F  L
Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
            P++  A++  D  Y+   +     +  R +S   +Q       ++    +     I  +
Sbjct: 226 -PEKGIAVVNLDCEYAPSFLN---GSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQ 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK F     L GE  VYN L +  +    +G D A ++  +  L    GR + +      
Sbjct: 282 GKVFLCETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLG--P 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             +Y+DYAHT ++L+ + + +  +    GR+I+VFGCGGDRD+ KRP+M K+  +    +
Sbjct: 340 FPVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFS 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE 
Sbjct: 399 FVTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEG 458

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I  +    +  D +++ E L  +
Sbjct: 459 YQIFKHQTI-VFDDREVVCEALAAL 482


>gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1]
 gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseiflexus sp. RS-1]
          Length = 509

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 146/511 (28%), Positives = 234/511 (45%), Gaps = 44/511 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +++ K   E  +   + P      +I  V  DSR +  G +FVA  G   DGH +I
Sbjct: 1   MRLHEIL-KHLCEPAHMPPVNP------EIAGVVYDSRAVTPGALFVAYRGFHTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-LA 119
           PQA+ +GA A+V        D +   R   P L V N R  L+  A+  YG     + + 
Sbjct: 54  PQALERGAAAVVYE------DPAWDGRVPVPALRVPNARVALAPLAAAFYGHPGRRMRIV 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYLAKA 173
               +   +  +F+  +   +G      G   T+        +  D+R +TP    +   
Sbjct: 108 GVTGTDGKTTTTFLTSVALEAGG--AITGLMGTVDFKIGERMWTNDSRQSTPEAPEVQAL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           L  ++  G ++  +EA+SH L    +RL G       FTN+ ++H+D+H T + Y   K 
Sbjct: 166 LRDMAEAGCSYAVIEATSHALSARWNRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKA 225

Query: 232 RLFEEL---------LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           RLFE L           +   A++ ADD + +  +  A  +  R+    +    +  + V
Sbjct: 226 RLFEMLAEFNDAAAPFKQRKIAVVNADDPHHRMFLDAAPVSAERLTYAVHAHADVRAEDV 285

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +  +  +  ++      D    L G+F V+NAL A  +  A G+     L  LE++  V
Sbjct: 286 RSTRDGLRFRVTTPWGAADARLRLTGDFNVWNALAALTVACAEGVPLERCLAALERVPGV 345

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E +    +   + VDYAHT  + E + + +R +T G++I VFG  G+RD+ KRP+ 
Sbjct: 346 RGRMERI-EAGQPFTVLVDYAHTPGAFEKLFRIVRPLTEGQVIAVFGSAGERDRAKRPLQ 404

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--------IEKGNRIEAIRTAIE 454
           G+IA    D+ IVTD++PR ED   I AEI  G            +   +R  AIRTA  
Sbjct: 405 GEIAGRFCDLVIVTDEDPRLEDRAAIIAEIAAGAEAVGKRIGETCLCIPDRALAIRTAFA 464

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                D++++ GKGHE   I   G   +  D
Sbjct: 465 YARPGDIVLLLGKGHEGSIIY--GTTPVPWD 493


>gi|150020558|ref|YP_001305912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
 gi|149793079|gb|ABR30527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
          Length = 491

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 136/501 (27%), Positives = 232/501 (46%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+++++       +N + +        + + +SS+S+ I+   +F+   G   D H  +
Sbjct: 1   MKIKEILKA-----LNSVILKVNCDENMEFDYISSNSKDIKENTLFICRKGFNFDSHKIV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 GA                    + P ++V ++R   S+ A   + K  E ++  
Sbjct: 56  DDVARNGA----------EIFIVEEEIEDYPYILVVDSRIAESIIADVFFQKPYEKLITF 105

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
             TGT+GK++       I  + G+     G     I      +  TTPS I + K +   
Sbjct: 106 GVTGTNGKTTSVHLFHHIMHQFGIKGSISGTVLNDIMGDKFYHHNTTPSAIEITKNMFKT 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   + ++E SSH L Q+R++ I+      TN+ RDH+D+HQT + Y  AK+ +   L
Sbjct: 166 VIEDGKYYAMEVSSHALSQYRVESIRYDIVGITNITRDHLDFHQTFENYKRAKLHIL-NL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
           L     AI+        E++        RV++ G        + ++ +  +     +   
Sbjct: 225 LKPNGIAIVNH------ELIHDIPKKNIRVVTFGTDNNSDYVIHEIISNWSGIFFKLKTP 278

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
             +   +  L G+F  +N  +     + IG D   V+  +     V GR E +    + G
Sbjct: 279 FGEKKVVSQLLGDFNAFNVTLVIAALVEIGYDIDDVISAISTFRGVDGRLEIISEAKKLG 338

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +D+AHT ++LE  + +IR +T GRII VFG GG  D GKRP+MG+IA   +DI I+
Sbjct: 339 IEIVIDFAHTPDALEKAILSIRKLTKGRIITVFGAGGQSDVGKRPMMGEIASKYSDICII 398

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T D+PR EDP KI  +I  G+      +   +R EAI TAI + N+ D++++AG+GHE  
Sbjct: 399 TTDDPRGEDPVKIIKDIEEGVVSGSLSLSIIDRREAIDTAITLANRGDIILIAGRGHEPY 458

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            +     K    D D+  +I+
Sbjct: 459 QVFDENYKVPFKDRDVAIDII 479


>gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O11]
 gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O46]
          Length = 494

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL---T 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA1]
 gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA2]
 gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA1]
 gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL086PA1]
 gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA1]
 gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA2]
 gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA1]
 gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL092PA1]
          Length = 499

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 233/476 (48%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLEGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +     I  DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGV--INVDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++   +Q     +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L     VPGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                I+ G R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483


>gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 494

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 494

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 224/468 (47%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+    L       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQPL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
 gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
          Length = 485

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 232/501 (46%), Gaps = 33/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ LI     ++ N L        + ++N +   SR+++ G IFVAI G K DGH FI
Sbjct: 1   MKLKTLI----SDITNSLEY----ASDIEVNRIQFKSRNVKKGDIFVAIKGLKHDGHNFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI+ GA A+V  + Y             P + V + R+ L   A  LY    +  N++
Sbjct: 53  NEAISNGAVAVVGEAEYDCLP--------VPYIKVQDARQALGNLAKTLYCDPSKMHNMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  V+ I Q +  S       S  ++     +  TTP  + L K L   
Sbjct: 105 GITGTNGKTTTAYMVKHIFQTASESCSLFSTVSNFVNGTELMSTATTPDILELNKMLRMS 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + V    +E SSHGL Q R++GI+   G FTNL  DH+DYHQ  + YFN K  LF+ L
Sbjct: 165 MDKNV---VMEVSSHGLHQKRVEGIEFNYGIFTNLTHDHLDYHQNMEEYFNTKAGLFK-L 220

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K   AII +   + ++++ +  N    VLS G       L+ +       ++ I    
Sbjct: 221 LKKNGEAIINSGCPWGRKLINQLKNKRQSVLSFGTSEND-DLQLLSTKDGVSKIRIQGSN 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +   P+PG   + NAL A       G++   +   +E    VPGRFE   + S    
Sbjct: 280 VKLEIKMPMPGNHNLQNALAAILCAYRAGVNVNDIKRAVESFPGVPGRFEEYYSQSVNF- 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             +DYAHT + LE +L+ ++ +   RI+ VFG  G++D  KR  M  I+    D  I+T 
Sbjct: 339 -ILDYAHTPDGLENLLETVKKLNGNRIVHVFGFRGNKDMTKRLAMLDISAKYCDKIILTL 397

Query: 418 DNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           D+      EK+  ++       G        +R  AI  A +   K D +V+ GKG E  
Sbjct: 398 DDLNGVALEKMILDLKKSVNYIGTNNIHLIIDRTRAIEYAWKNSIKGDRIVITGKGPELY 457

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
                 E     D + I+ + 
Sbjct: 458 E--REFELPADSDAETIKYLF 476


>gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 514

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 150/517 (29%), Positives = 232/517 (44%), Gaps = 39/517 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K F EL+  ++          I+ V+ DSR +  G +FVAI G   DGH +I  A+ QGA
Sbjct: 2   KSFAELLLHVTHQASGDHHVAISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A+V        D      +  P  +V + +  LS  A+  Y  +P   L V G +G   
Sbjct: 62  VAVVYD------DPHQAPPATIPSALVADAKVALSPIAAAFY-DYPAQQLEVVGITGSKG 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGV 182
             +           S   +G  ST+        +A   R +TP  + +   L  +   G 
Sbjct: 115 KTTTTFLTAAALEASGELVGFMSTVDFKIGQRQWANKTRQSTPEALEIQAMLREMVEAGC 174

Query: 183 THVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----- 235
            +  VE++SHGL    +RL          TN+  +H+DYH T + Y   K +LF+     
Sbjct: 175 RYAVVESTSHGLSPRWNRLGDCAYDVALITNVTHEHLDYHGTVEQYRADKAQLFQLLATS 234

Query: 236 --------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIH 286
                   +  P E  AI+ ADD ++ +  + A     R LS        +   ++ +  
Sbjct: 235 PSQKSILGQPTPVEKVAIVNADDPHAAQF-RAAAGEQVRHLSYAIHAEADLRATEIVSTS 293

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              + T      +F     L G F VYN L A  +C+A G+D A  ++ LE +  + GR 
Sbjct: 294 KGLRFTAITPQGNFALNLQLVGTFYVYNVLAALSVCLARGVDLAAAIQRLEAIPGINGRM 353

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V    +   + VDYAH  +S E ++  +R +T GR+I VFG  G+RD  KRPI G+IA
Sbjct: 354 EQVEL-GQPFSVLVDYAHNPDSFEQVMSMLRPLTQGRLIAVFGSAGERDLAKRPIQGQIA 412

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--------KGNRIEAIRTAIEMLNK 458
               D+  +TD++PR+ED  +I  EI  G     +          +R  AI  A+     
Sbjct: 413 AKWCDLLYLTDEDPRAEDSLQILQEIAAGAKAEGKIIDQNCWLIPDRRTAIEQALATAQA 472

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            DV+++ GKGHE   I  +G+ + +   +  R + GL
Sbjct: 473 GDVVLLLGKGHEGNIIYASGDIEWNEHAEAERALQGL 509


>gi|307731077|ref|YP_003908301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
 gi|307585612|gb|ADN59010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
          Length = 519

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 154/481 (32%), Positives = 223/481 (46%), Gaps = 34/481 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A      D   FI  A+ +GA A++V          A+      
Sbjct: 30  HLHADTRSLGAGDAFFAYAVEGADNRPFIDAALERGAAAVLVQPEGFSGALDASSM---- 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   +++L V  TGT+GK+S + ++       G     IG 
Sbjct: 86  -LAVPRLNELAGSIASAWYGDPSDHMLTVGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK RLF    P+   A+I  DDA  + ++  +     R +
Sbjct: 205 FTNLTQDHLDYHRTFEAYEAAKARLFA--WPELRAAVINRDDAVGRRLLA-STRGHARTI 261

Query: 269 SVGYQG-------------KFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYN 314
           + G                 F+    V A        +S  +  + D      G F V N
Sbjct: 262 AYGLDAGQADPSQAAQQADAFLLAANVRATATGTAFHLSTSDWGEADVEVQTLGAFNVSN 321

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMI 372
            L   G  +A  +     L  L KL  V GR + +G    +    + +DYAHT ++LE  
Sbjct: 322 LLGVLGALLAANVPFDAALAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKT 381

Query: 373 LKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L+ +R +     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I 
Sbjct: 382 LEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKLADGVVVTSDNPRSEDPQSII 441

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D 
Sbjct: 442 GQIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQ 500

Query: 487 D 487
           D
Sbjct: 501 D 501


>gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
 gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
          Length = 508

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 158/512 (30%), Positives = 240/512 (46%), Gaps = 40/512 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L       +++ L+    +        ++SDSR I  G +FVA  G++ DG  +I  AI 
Sbjct: 4   LTTTALASILDWLAANAPKAE------LASDSRRIAQGDVFVAYPGDEADGRSYIANAIE 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
           +GA+A++  +A    D       +   L +D+ ++     A+  Y     ++  +A+TGT
Sbjct: 58  RGAQAVIYEAAGCTWDAEW----DVAHLAIDDLKEHAGEIAAAYYAHPDRSMFTVAITGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSY 176
           +GK+S A ++     R G  +  IG    +  F             TTP  + L ++L  
Sbjct: 114 NGKTSCAQWLGSALSRLGQPTAVIGTLG-VGIFTNGGHGSFDVTGYTTPDAVLLQRSLVN 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +S+ G T +++EASS GL Q RL G+      FTN  RDH+DYH    AY  AK  LF+ 
Sbjct: 173 VSNLGATALAIEASSIGLHQGRLSGMHFDMALFTNFTRDHLDYHGDMAAYEEAKAMLFD- 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--------HLKKVCAIHNK 288
             P    A+I  DDA    +++R  +    V   GY                 + +  + 
Sbjct: 232 -WPGLQHAVINLDDAMGVRLVQRLQSRQADVGITGYTLSDKKIDGIAVLRATDIRSNQSG 290

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +     +      L G+F V N L   G+ +A GI     +  +E L  VPGR + 
Sbjct: 291 TVFQLESSAGNTQVKTQLVGQFNVSNVLGIIGILLAKGIALQDAVNAVEALTAVPGRMQQ 350

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKI 405
           +G       + +DYAHT ++LE  L  +R++     G +  VFGCGGDRD GKRP MGK+
Sbjct: 351 LG-GGEAPLVVIDYAHTPDALEKTLATLRSVANDRGGELWCVFGCGGDRDPGKRPQMGKV 409

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
           ++  AD  +VT DNPR+E+P  I  +I+ GI           +R  AI  A     +QDV
Sbjct: 410 SMA-ADHIVVTTDNPRNEEPANIIGDIVAGITAPKNAPQIIEDRASAILWAGRHAARQDV 468

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHE    V  G K   +D D     L
Sbjct: 469 ILLAGKGHEAYQEVK-GRKLPFLDADHAALAL 499


>gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus RF122]
 gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus RF122]
          Length = 494

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + + +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
 gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
          Length = 489

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 168/473 (35%), Positives = 252/473 (53%), Gaps = 26/473 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +++DSR+++ G++FV +    +    F+  A+  GA  IV  SA +L         
Sbjct: 26  QVSGITADSRNVKPGFVFVCLSEVAK---KFVSDAVKAGARFIVAGSAEALPRV-----D 77

Query: 89  NTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           N  I++      F    A +   G+ PE + AVTGT+GK+SVA F +QI   +G +   I
Sbjct: 78  NAQIIIFPKQHDFYYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASI 137

Query: 148 GPTST-ISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T +         T   TP  + L K LS L +  V ++ +EASSHG+ Q RL G+K
Sbjct: 138 GTLGTAVGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLCIEASSHGMAQKRLYGVK 197

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +   +FTNL RDH DYH   + Y+ AK +LF E+L  E  A++ AD     E+ +   + 
Sbjct: 198 VSVAAFTNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSGRYAELRRLVGSR 257

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLC 322
               ++ G     + L ++ +      V + + GK  +D  FP+ G+FQ+ N L A  + 
Sbjct: 258 N--TITYGINVGDVRLTRLKSSTLGHNVAVEICGKVVYDGAFPVLGKFQIPNLLCALAIV 315

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381
            A G         ++KL    GR E +     GGR+ VDYAHT  +LE  L +++     
Sbjct: 316 TASGA--RCSDIPIDKLVSPRGRMELI-----GGRVIVDYAHTPAALEHALTSLKWHGFP 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            +I++VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPR+E+PE IR EI+      IE
Sbjct: 369 QKIVLVFGCGGDRDREKRGAMGMVAGKYADVIIVTDDNPRNENPEAIRKEILSHCERAIE 428

Query: 442 KGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             NR +AI  A+    + D +L++AGKGHET   +  GE     D D++R  L
Sbjct: 429 IPNRSDAIHYAVNFAVRNDHMLLIAGKGHETTQQIA-GESIEFNDGDVVRSCL 480


>gi|94312064|ref|YP_585274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus metallidurans CH34]
 gi|93355916|gb|ABF10005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 515

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 158/487 (32%), Positives = 227/487 (46%), Gaps = 32/487 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++ D+R +Q G +F A V GN     DG   I +AIA GA AIV  +     +F+    
Sbjct: 31  QLTGDTRRLQPGDVFFAYVLGNERLATDGRPHIDKAIAAGASAIVYEAD----NFAWPHD 86

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L V +  +     A+  YG    N+    VTGT+GK+S + ++ ++ Q +G    
Sbjct: 87  DRVPHLAVSHLHELAGPIAAGWYGIAACNLTIAGVTGTNGKTSCSQWLARLLQMAGTRCA 146

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   +      +    TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G   
Sbjct: 147 TIGTLGSGFPDALKLTGFTTPDAVQLQASLAELHDAGARAVAMEVSSHGLEQGRVAGTGF 206

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHN 262
                TNL +DH+DYH T   Y  AK RLF         A+I  DD   + ++       
Sbjct: 207 AVAVLTNLTQDHLDYHGTMAEYEAAKARLFA--WDGLKAAVINRDDGMGQRLLASNAVAV 264

Query: 263 AGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  +V+  G  GK         ++    V A        +       D   P+ G F V 
Sbjct: 265 SAPQVIEYGIDGKAGASVARGQWLRATGVRATGAGTAFHVDGSFGTADVTTPMIGAFNVS 324

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L   G  +A G+     ++ L +L  V GR E  G         VDYAHT ++L   L
Sbjct: 325 NLLAVLGAALAQGVTWDAAIDALRRLTPVDGRMELFG-GHDAPLAVVDYAHTPDALVQTL 383

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +R +     G++  VFGCGGDRD  KRP+MG +A  LAD  ++T DNPRSEDP +I  
Sbjct: 384 TALRPVAQARQGKLWCVFGCGGDRDATKRPLMGGVAERLADEVVLTSDNPRSEDPREILE 443

Query: 431 EIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            I  G+          +R  AI  AI+     DV++VAGKGHE    +  G K+   D +
Sbjct: 444 AIADGMSDRARAALIEDRAAAILYAIKHAAPADVVLVAGKGHEATQEI-QGRKRPFSDRE 502

Query: 488 IIREILG 494
            +R  LG
Sbjct: 503 HVRLTLG 509


>gi|91785298|ref|YP_560504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
 gi|91689252|gb|ABE32452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
          Length = 518

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 226/480 (47%), Gaps = 33/480 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A   +  D   FI  AI +GA A++V      + FS  I  +  
Sbjct: 30  HLHADTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQP----EGFSGAINPSN- 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V    +     AS  Y    +++L   +TGT+GK+S + ++       G     IG 
Sbjct: 85  MLAVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYHQT +AY  AK RLF    P+   A+I  DDA  + ++        R +
Sbjct: 205 FTNLTQDHLDYHQTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRLLASTQG-HARTI 261

Query: 269 SVGYQGKFIHLKK------------VCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNA 315
           + G       L+             V A        +S  +  D +      G F V N 
Sbjct: 262 AYGLDSGQGALQDAPQADALLLASNVRATATGTAFHLSTSDWGDAEVEVQTLGAFNVSNL 321

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMIL 373
           L   G  +A  +     L  L +L  V GR + +G    +    + +DYAHT ++LE  L
Sbjct: 322 LGVLGALLAADVPFEAALAELAQLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTL 381

Query: 374 KNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + +R +     G +I +FGCGGDRD  KRP+MG IA  +AD  +VT DNPRSEDP+ I  
Sbjct: 382 EALRPMVTARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQSIIE 441

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 QIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 500


>gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus 04-02981]
 gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 494

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|307244124|ref|ZP_07526242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492495|gb|EFM64530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 495

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 144/510 (28%), Positives = 242/510 (47%), Gaps = 35/510 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+     E I+   +   Q +E +I+ +  DSR  +   IFVAI G   DGH ++
Sbjct: 1   MKLSELLTGL--EYISNRDM--DQLKECEIDNICYDSRKARKNGIFVAIKGETVDGHKYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A  +G  A VV       + +  +  +  +++VD++R  LS  ++  +G   +   ++
Sbjct: 57  DSAYQKGCRAFVV-------NDNMDLAEDAIMIIVDDSRNCLSHISANFFGNPSKELKVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            VTGT GK+++ ++++ +  +SGL++  IG      + +      TTP    L K +  +
Sbjct: 110 GVTGTKGKTTITNYLKSVLTKSGLNTGVIGTNGVFYNDYEGKTINTTPESYELHKTIREM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              GV  V++E SS GL   R++ +    G +TNL  DHI    H T + Y + K RLF 
Sbjct: 170 VDAGVKCVAMEVSSGGLMMERVNHVDFDIGIYTNLSPDHIGPKEHPTFEDYRDCKSRLFS 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTIS 294
             L +     I  DD ++  ++ +A    C + +   +       + +     K  + + 
Sbjct: 230 --LCRHGI--INIDDDHASYMIDKAT---CDIETFSIKKPSDYRAEDISLTRTKTSLGVD 282

Query: 295 V----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                +G+        PGEF VYNAL        +GID   +L  L     V GR E + 
Sbjct: 283 FKYIRDGQASQTHIASPGEFSVYNALAVIATANYLGIDKDKMLSALATAQ-VDGRVEVIP 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +      + +DYAH   SLE +L+ +      R+I VFG  G R   +R  +G +A  L 
Sbjct: 342 SIPD-ITVVLDYAHNGVSLENVLETLLKYKPRRLICVFGSIGGRSVLRRKELGDVAAKLC 400

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DI+I+T DNP  EDP  I  +I           ++  +R +AI   IE+    D+++VAG
Sbjct: 401 DISILTTDNPDDEDPMNIINDIEESFVDSKCQVLKIVDRSQAILKGIEIAQPGDMVIVAG 460

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           KGHE   I+ +GE+    +   + + + ++
Sbjct: 461 KGHEKYQII-HGERVFYDEKAEVLKAIEIV 489


>gi|153809827|ref|ZP_01962495.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
 gi|149834005|gb|EDM89085.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
          Length = 491

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/494 (27%), Positives = 231/494 (46%), Gaps = 31/494 (6%)

Query: 14  LINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+  L     Q   E++++ V  DSR ++   +F+ I G   DGH F+P  I +GA+ + 
Sbjct: 6   LLEGLKYICCQGSTEQEVSTVVYDSRKVEENSLFICIRGAVVDGHKFVPDVIRKGAKTL- 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA-- 130
                 + +       +  ++ V +TR  ++  ++  +G   E +  +  T  K      
Sbjct: 65  ------VVEEEVEAPEDVTVIKVADTRYAMAFISAAYFGHPAEKLKTIGITGTKGKTTTT 118

Query: 131 SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V+ I + +G     IG   + I   +     TTP    + +    +   G   V +E 
Sbjct: 119 YMVKSILENAGYKVGLIGTIEAIIGEESIPACNTTPESYLVQEYFRKMVDAGCDCVVMEV 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           SS GL  HR  G     G FTN+  DHI    H+    Y   K      LL +    I+ 
Sbjct: 179 SSQGLMLHRTQGFVFDYGIFTNIEPDHIGPNEHKDFDDYLRCK----SMLLQQCRVGIVN 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK---DFDFL 303
            DD + + +++      C++ + G+     +  +    +  K  + IS + K   +F   
Sbjct: 235 RDDEHFERIIE---GHTCQLETYGFSPEADLRAEDAHMVGGKGYLGISYQLKGLMEFPVE 291

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+F +YN+L A  +C    +    +++ L K+  V GR E +  +     + +DYA
Sbjct: 292 IDIPGKFSIYNSLTAIAICRHFNVSQENIIKAL-KVARVKGRIEVIKVSDE-FTLMIDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H + +LE +L  +R     R++ +FGCGG+R + +R  MG+++  LAD+ I+T DNPR E
Sbjct: 350 HNAMALESLLTTLREYHPHRLVCLFGCGGNRAKSRRYEMGEVSGRLADLTIITSDNPRFE 409

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           +P+ I  +I  GI      ++E  +R EAI  AI      D++V+AGKGHE    +  G+
Sbjct: 410 EPQDIIDDIKIGISKTDGKYVEICDRKEAIAYAIHHGEPGDIIVLAGKGHEDYQEIK-GK 468

Query: 480 KKMSVDCDIIREIL 493
           K    +  +I EIL
Sbjct: 469 KYPMDERVLIAEIL 482


>gi|295104216|emb|CBL01760.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii SL3/3]
          Length = 492

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 146/508 (28%), Positives = 237/508 (46%), Gaps = 39/508 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+      L+           + +I ++  DSR    G +FV IVG + D H F 
Sbjct: 1   MKLEQLMEGVPFTLV-------QGSLDTEIADIIYDSRKAAPGLLFVCIVGTQRDSHAFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A+G  A+V+     L            ++ V+++R  ++L ++ L+G  P   + +
Sbjct: 54  ADCAAKGVSALVIQHDIDLSALP-----GVTVVKVESSRYAMALMSANLFGN-PARQMTM 107

Query: 121 TGTSGKSSVA---SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
            G +G          ++ + + +G     IG          +D   TTP    L K    
Sbjct: 108 IGVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFRE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
               G     +E SS GL   R+ G+    G FTNL  DHI    H+T + Y + K +LF
Sbjct: 168 FLDAGCDTALMEVSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---KVCAIHNKQQV 291
           +         ++  DD  +  +++      C++++ G   K  + +   K+   H+   V
Sbjct: 228 KRC----DVGVVNIDDENTAALLE---GHTCKLVTYGRDEKADYRETGYKLLRTHDFLGV 280

Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              V GKD  D    +PGEF VYNAL A  +   +G+  A + + L K  VV GR E V 
Sbjct: 281 AFHVTGKDEMDVKVNMPGEFSVYNALAALAVGKVLGLPDAAIHDGLGK-CVVKGRVELVP 339

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            + +   I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +A
Sbjct: 340 ISKK-FTILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMA 398

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D +I+T+DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V
Sbjct: 399 DFSILTEDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAV 458

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
            GKGHET      G K   ++ +++ E 
Sbjct: 459 IGKGHETYRD-REGVKTPFLERELLEEY 485


>gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 493

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
 gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
          Length = 533

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 153/475 (32%), Positives = 228/475 (48%), Gaps = 20/475 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++  ++ ++   +F A+ G++  G  +  QA+ +GA A++   A + +  + T   + 
Sbjct: 23  TGITLRAQDVRPHDLFAALPGSRAHGAGYAGQALERGAAAVLTDRAGA-ELLAGTDLGSV 81

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            +LVV+  R+ L   A +LYG     +  + VTGTSGK++    ++      G  S  IG
Sbjct: 82  ALLVVERPREHLGAIARQLYGDPSRRLAVVGVTGTSGKTTTCYLLEAALAADGSRSAVIG 141

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T I      + LTTP    L   L+ +  +GV  V++E SSH L   R+ G +   G
Sbjct: 142 TVQTRIDGQITPSALTTPEAPDLQALLAVMVERGVGAVAMEVSSHALSLGRVSGTRFAVG 201

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL +DH+D+H   + YF AK  LF+    +    +I  D  Y   +      A    
Sbjct: 202 AFTNLSQDHLDFHHDMEDYFRAKAMLFDG---RAGAHVIDVDTEYGARLAAEHPEALTVS 258

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIG 326
              G    +       A +  Q V +S  GK        +PG F V NA VA     A+G
Sbjct: 259 DRPG-AADWSVEMVTLAANGVQHVVLSGPGKRQVTLDLAIPGAFNVGNAAVALACVDALG 317

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D     + L  + VVPGR E V    +     VDYAH   ++  +L  I    +G +IV
Sbjct: 318 RDVQQAADALATV-VVPGRMERVDA-GQDFLAVVDYAHKPGAVAAVLDAIGQGLAGPLIV 375

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------G 438
           V G GGDRD GKRP+MG  +   AD+ IVTDDNPRSE P  IRA+++ G           
Sbjct: 376 VLGAGGDRDTGKRPMMGAESAARADVLIVTDDNPRSERPADIRAQVLAGAAPVADRRPCQ 435

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +E G+R  AIR A+++      +V+AGKGHE    + +G      D D +R  L
Sbjct: 436 VLEIGDRRAAIRRAVQLAGTGGAVVIAGKGHEQGQEI-DGVVHPFSDRDELRAAL 489


>gi|289677694|ref|ZP_06498584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 435

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 143/437 (32%), Positives = 208/437 (47%), Gaps = 14/437 (3%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
            +GA A+    AY ++       ++ P++ V      LS  A R YG      N++ VTG
Sbjct: 1   KRGAAAV----AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLNLVGVTG 56

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+SV   V Q     G     +G   T      Q  R TTP PI +   L+ L   G
Sbjct: 57  TNGKTSVTQLVAQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAG 116

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V++E SSHGLDQ R   +       TNL RDH+DYH T +AY  AK +LF    P  
Sbjct: 117 ARAVAMEVSSHGLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPDL 174

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I  DD + +E+      +     S      +++ +      +  + T+     +  
Sbjct: 175 KCRVINLDDDFGRELAAVKQESRLITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHF 234

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G F + N L A G  + +      +L+ L KL    GR + +G  +    + VD
Sbjct: 235 LRSSLLGRFNLSNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVD 293

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPR
Sbjct: 294 YAHTPDALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPR 353

Query: 422 SEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           SE P  I  +I  G     +      R +AI   I   N  DV+V+AGKGHE    + NG
Sbjct: 354 SESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NG 412

Query: 479 EKKMSVDCDIIREILGL 495
           +++   D       L +
Sbjct: 413 QRQPFSDLQEAASALAV 429


>gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA1]
 gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA1]
 gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA4]
 gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA1]
 gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA3]
 gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL067PA1]
 gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA1]
 gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA2]
 gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA1]
 gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA3]
 gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA2]
 gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA1]
 gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA2]
          Length = 499

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 233/476 (48%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +     I  DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGV--INVDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++   +Q     +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L     VPGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                I+ G R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483


>gi|225630606|ref|YP_002727397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
 gi|225592587|gb|ACN95606.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
          Length = 475

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 170/495 (34%), Positives = 273/495 (55%), Gaps = 29/495 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L++          +I  + + + +I  V+ + + I+ G++FV +   + D  ++I
Sbjct: 1   MKLRELLH----------NIIDVNF-DIEIKGVTCNPKKIKEGYLFVCVS-ER-D-RIYI 46

Query: 61  PQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENI 117
            Q ++ GA+AI+ S     +L       R     +   N ++  S   SR Y  K P+ +
Sbjct: 47  DQILSCGAKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYV 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AVTGT+GK+SV  F +QI Q SG ++  IG   T  +  +     + +        + L
Sbjct: 107 AAVTGTNGKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V H+ +E+SSHG+DQ+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF E+
Sbjct: 167 RGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEV 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP+   AI+ AD      ++K A     +V++ G +G  I L +  +  N Q +T+ ++ 
Sbjct: 227 LPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDN 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + ++  FP+ G+FQ YN L A G+    G++   +   +EKL   PGR E V        
Sbjct: 287 QIYNTFFPVLGKFQAYNLLCAIGIS---GLNYREIC--VEKLVSPPGRMEKVK-----PF 336

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +VDYAHT ++L+  L +++   + +II+VFGCGG+RDQ KR  MGKIA   AD  I+TD
Sbjct: 337 AFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITD 396

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           DN R EDP KIR +I+   P  +E G R EAI   +++  N+  +L+VAGKG+E   I+ 
Sbjct: 397 DNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGMILLVAGKGNEKFQIIG 456

Query: 477 NGEKKMSVDCDIIRE 491
           N   +   D ++I+ 
Sbjct: 457 NQTFE-FSDVEVIKN 470


>gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
 gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
          Length = 494

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N +   
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAVM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G    ++++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLEMIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 947

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 171/464 (36%), Positives = 254/464 (54%), Gaps = 11/464 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +S D+++I+   IF AI GNK DG+ FIP AI +G++ IV            ++++ 
Sbjct: 19  FSGISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAINKGSKIIVTEKKVK------SVQNG 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +  +N RK L+  A ++Y K P+N++AVTGT+GKSS+A+F  QI + +      IG 
Sbjct: 73  ILYIHTNNVRKLLAETAFKIYNKKPKNLIAVTGTNGKSSIANFYFQILKLNNKKVASIGT 132

Query: 150 TSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               S +   +   TT  PI LAK LS L S  + +V +EASSHGL Q+RLDG+K  +G 
Sbjct: 133 LGVKSKNINLNLSNTTIDPIKLAKILSKLKSHKIENVIMEASSHGLKQNRLDGLKFNSGI 192

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+  + Y NAK+ LFE L+ K+   I        K++ K   N   ++ 
Sbjct: 193 FTNLSQDHLDYHKNLKNYLNAKLYLFENLIKKKGNLITDQLIPEFKKIKKITINKRLKLY 252

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           ++  +   + +         Q   I +     +    L G+ Q+ N L+A        I 
Sbjct: 253 ALNDKKNNLQVISHSFKGEAQSFKIKLNNSIQNINLNLIGKIQLKNVLMAIIAAKNSNIG 312

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
              +L  + KL  V GRFE +G      ++ +DYAHT ++L+  L N+R    + +IIV+
Sbjct: 313 LNKILNKIYKLKPVEGRFEKIGKIKNHSKVILDYAHTPDALKTCLLNLREQFPAKKIIVL 372

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFIEKGNR 445
           FGCGG+RDQ KR  MGKIA   +D  I+T+DNPR E+P+KIR +          IE  +R
Sbjct: 373 FGCGGNRDQNKRSKMGKIASYFSDKIILTNDNPRLENPQKIRRDIKKGIKKKKIIEISDR 432

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             AI  AI  LN  D+L+VAGKGHE    + + +K    D  +I
Sbjct: 433 AMAITRAIHDLNSGDILLVAGKGHEKTQDIGS-KKIFFSDKKVI 475



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/441 (19%), Positives = 158/441 (35%), Gaps = 38/441 (8%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            +S+ +    IF AI G K DG+ F+ Q+  + A   VV+   +  + S         + 
Sbjct: 515 INSQEVTKNDIFFAIKGKKNDGNKFVAQSFKRKASLAVVNKIQNKLNHSR-------QIK 567

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V NT KFL+  +         NI+A+TG+ GK+++   +     +           S +S
Sbjct: 568 VKNTLKFLTNVSKIFRKSIDTNIIAITGSCGKTTLKELLGNTLNK----------ISKVS 617

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
              +        P+ L   ++     G+  + V     G   +    I+   G  TN+  
Sbjct: 618 ISPKSYNNKFGVPLSLFN-INQKDEFGI--LEVGMDKKGEIDYLSKIIEPDVGVITNINY 674

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H    +  +    AK  + +  +      ++ ADD++ K     A     +V+S G + 
Sbjct: 675 AHAKNFKNIKQIALAKSEIIDN-IRLYGFIVLNADDSFFKLHYNIAKKKNIKVISFGIKN 733

Query: 275 --KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG--IDSA 330
               I L  +     K ++ IS+  K   FL     +  +YN L A  +           
Sbjct: 734 HKADIKLINIKPFRKKFRINISLNNKRKYFLLSNDFQNNIYNILSALAVISIYKNIFKLD 793

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN--IRTITSGRIIVV 387
             + +  K+    G    +  N++   +    Y     SL+  +KN     +      ++
Sbjct: 794 KNIFYDFKIPGGRGDHSVIKFNNKKINLIDQSYNSNPLSLKSAIKNYDKINLKKSNKYML 853

Query: 388 FGCGGDRDQGKRPIMGKIA----LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            G   +     R +   +A        D   V     + +    I  +I     G I   
Sbjct: 854 IGDMLELGSHSRRLHRSVAPIINKSNIDKVYV-----KGKMASIIFKDISKAKKGRIL-L 907

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           N+ + I    + LN  D L++
Sbjct: 908 NKSQIIELIRKDLNNNDYLMI 928


>gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus COL]
          Length = 492

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 224/468 (47%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 19  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSL------- 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 72  PANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 131

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL  ++
Sbjct: 132 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRSVE 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 192 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 248

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 249 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAM 308

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 309 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 367

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 368 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 426

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 427 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 474


>gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 497

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 141/501 (28%), Positives = 243/501 (48%), Gaps = 24/501 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  LI      ++   S  P +  ++ I  +S++S +++   +F+   G+K D H   
Sbjct: 1   MKLGKLIETIEKFVVK--SNIPPELIDKDIEHISNNSNNLKENTLFICRKGSKFDSHTIA 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +   +G    +V+           I +  P + V ++R   +  A+  Y    ++++  
Sbjct: 59  ERLYNEGMVIALVTEE--------EINTKLPHVQVYDSRLAEAYLAAEFYSHPYQHLITF 110

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
             TGT+GK++ A     I Q+ GL+    G     I         TTP  I +   +S  
Sbjct: 111 GVTGTNGKTTCAHLFHHIMQQFGLNGSLSGTVLNDILGDKFYVHNTTPDAITIMDNMSKT 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G ++ S+E SSH LDQ R++ I+      TN+ RDH+DYH T + Y N+K+ LF+ L
Sbjct: 171 HKNGGSYYSMEVSSHSLDQGRVETIRFDIAGLTNITRDHLDYHPTFEHYVNSKLHLFD-L 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVE 296
           L K+  A+I       + V          +++ G      + +  +    N     +   
Sbjct: 230 LKKDGIAVINE-----EYVQLLNGKKVPNLVTFGVNENAQYKISDITTGWNGTNFILRTP 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
                    + GE+  +N  +     + IG +   V+ ++     V GRFE +    R G
Sbjct: 285 YGTKKVYTQMIGEYNAFNVTLVLAGLVEIGYEIDEVISYISSFRGVDGRFEPIPEARRLG 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +D+AH+ ++LE ++ + R +  GR+IVV+G GG  D+GKRP+M ++   LADIAI+
Sbjct: 345 IEVVIDFAHSPDALEKVISSARKLAKGRVIVVYGAGGQADKGKRPMMAEVVTRLADIAIL 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T D+PR E+PE+I  E+  G+      +   +R EAI TAI + N+ DV+++ G+GHE  
Sbjct: 405 TTDDPRGENPEEIINEVEKGVRPNSLSLTVLDRKEAIDTAITLANRGDVVLITGRGHEPY 464

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I ++  K    D D+  +I+
Sbjct: 465 QIFSDTLKIPFKDRDVALDII 485


>gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
 gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
          Length = 477

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 148/476 (31%), Positives = 229/476 (48%), Gaps = 30/476 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +I  V++DSR I+ G +FVAI G + DGH FI +AI  GA  IV++   +  D    
Sbjct: 19  NDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQID---- 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
                  + VD+ R  L+  ++ +     + +  + VTGT+GK++ +S +  I +     
Sbjct: 75  ---GINYIKVDDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLNSP 131

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG   T I+    +   TTP    + K L     + + +  VE SSHGL  HRLDGI
Sbjct: 132 CTNIGTNGTFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVECSSHGLYLHRLDGI 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 F NL  +H+D+H+  + YF+AKM LFE    K +      DD Y +    +A  
Sbjct: 192 DFDVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKKIA----NVDDEYGR----KAKA 243

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 +   + +     + V  I  K    I    K+  F+      F VYNA+ A   
Sbjct: 244 RFEDTYTFSLENESDFRAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIAA 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G +   + + LE    V  RFEFV  N RG  I +D+AHT  + E I K++     
Sbjct: 300 VNLLGYELEDIAKALESFTGVEARFEFVN-NDRGINIVIDFAHTPKAFENIYKSVPN--D 356

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---- 437
            R I V+G  GDR +  R  +GKI+ +    ++VT D+P+ +  E I  +I+ GI     
Sbjct: 357 KRKIAVYGMSGDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSGIEEANG 416

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            F+   +R  AI+ AIEM +K D +++ GKG ET   +   EK    + + + E+L
Sbjct: 417 EFVRIKDRKSAIKHAIEMADKGDFVLLLGKGQETFIKLKGNEKTPYSEKETVNEVL 472


>gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
 gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
          Length = 530

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 219/467 (46%), Gaps = 21/467 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NT 90
           ++ +DSR I  G IF AI+G+ +DG  +I QAI QGA+ +V       +    T  S + 
Sbjct: 32  DLHNDSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHGDVTFASSDN 91

Query: 91  PILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + +V      + L       Y    +N  ++ +TGT+GK++ +  + Q+      +   
Sbjct: 92  TVAIVKFYQLNQHLFTLTKNYYQAPQDNMTLVGITGTNGKTTTSQLLAQMLSAYQKTCAV 151

Query: 147 IGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     S         TTP    L +     S +  ++V++E SSH L Q+R+      
Sbjct: 152 IGTNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQADLFD 211

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL RDH+DYH +  +Y  +K ++F         A++  DD  +K+ ++       
Sbjct: 212 IAIFTNLSRDHLDYHGSMASYGESKKQIFSA--DSNQVAVVNFDDQQAKKWLENWPKQQT 269

Query: 266 RVLSVGYQGK------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             L    +        F+  K +    +    T+     D D   PL G+F + N L A 
Sbjct: 270 LWL-YSRETDNSNYKNFVTAKGINHHRHGVSFTLMSHLGDIDITSPLLGDFNIDNLLAAI 328

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +  GI  + +   + ++  + GR E     +      VDYAHT ++LE  L+  R  
Sbjct: 329 SVLLIQGIPLSEIPHLVTQVSAIAGRMEATSAKNL-ATAVVDYAHTPDALEKALQACRQH 387

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
            +G + VVFGCGGDRD+GKRP+M + A   AD  +VT+DNPRSED + I  +I+ G    
Sbjct: 388 CAGELYVVFGCGGDRDKGKRPLMAQAAEKYADHLVVTNDNPRSEDAQLIANDIVAGFTCP 447

Query: 438 ---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                     R +A+   +      D++++AGKGHE   IV   ++K
Sbjct: 448 DAEQISIILEREQAVLKTLNKAKPGDIVLLAGKGHEDYVIVAKHDEK 494


>gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 494

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  SANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + + +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
 gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
          Length = 484

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 142/490 (28%), Positives = 242/490 (49%), Gaps = 23/490 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +S DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 7   KRINQILKFLDIKTLSQNNFQIESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 67  SLVLTD--------SHQFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY       ++ 
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKK--YQNLV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +      A    +S+  +   +++K       K +  +   G+   ++   
Sbjct: 235 NIDDEYGQRLCNMTQ-APVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 294 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL-DNDIKIVIDYAHT 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   I+T+DN R E  
Sbjct: 351 PDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIIITEDNNRFESI 410

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I ++I  G       I   +R +AIR +IE  N+ D++++AGKGHE   +  NG K+ 
Sbjct: 411 ENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHECY-LDKNGAKEY 469

Query: 483 SVDCDIIREI 492
             + +II+ +
Sbjct: 470 FDEREIIKNM 479


>gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 494

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|121606311|ref|YP_983640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
 gi|120595280|gb|ABM38719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 496

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 149/481 (30%), Positives = 226/481 (46%), Gaps = 18/481 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER I  +S+DSR    G  F+A  G   DG  ++  A+A GA A +V  A +     A  
Sbjct: 15  ERVIGTLSADSRKAGQGDGFIAWPGAATDGRNYVNAALAAGASACLVEHAGA----QAYG 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++  +      +      A+  +G   E +   A+TGT+GK+S A ++ Q   R G   
Sbjct: 71  FNDDRVATYAGLKAATGPMAAAYFGAPSEQLQVTAITGTNGKTSTAWWLAQALGRLGRKC 130

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G            N LTTP P+ L + L   + +G    ++EASS GL++ RLDG +
Sbjct: 131 GIVGTLGIGEPGAMVANGLTTPDPVLLQQQLRRFADEGFAACALEASSIGLEEGRLDGTR 190

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTN  +DH+DYH +   Y+ AK  LF    P    AII  DD+   E+       
Sbjct: 191 IQIAVFTNFTQDHLDYHASMPDYWRAKQMLF--NWPGLRAAIINVDDSRGLELSAALAGT 248

Query: 264 GCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              V ++   G      + +C   +     +   G+      P+ G + V N L      
Sbjct: 249 SLDVWTLSCAGPARLQAQAICQGAHDLSFDVVEGGERHRISTPMVGLYNVSNLLGVMASL 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
            A+ +  A  +     L  VPGR E +        + +DYAHT ++LE +L  +  +   
Sbjct: 309 RAMDVPLADAVAACADLLPVPGRTETLAVPGL-PLVVIDYAHTPDALEKVLTALNPVAQG 367

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR+  VFGCGGDRD GKRP+M   A   AD  ++T DNPRSEDP  I  +++ G+   
Sbjct: 368 RGGRLWCVFGCGGDRDAGKRPLMAAAAEKNADQLVITSDNPRSEDPVTIIGQMLKGLSRP 427

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
                + +R  AI  A+++   QDV+++AGKGHE    +  G K    D D  + IL  +
Sbjct: 428 QVAHVQEDRRAAIAHALQLAQPQDVVLLAGKGHENYQEIK-GVKFAFSDRDQAQAILDAL 486

Query: 497 L 497
           +
Sbjct: 487 V 487


>gi|296394969|ref|YP_003659853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
 gi|296182116|gb|ADG99022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
          Length = 506

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 163/494 (32%), Positives = 244/494 (49%), Gaps = 17/494 (3%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL +      +   ER ++  V+  ++ ++ G +FVA+ G +  G  FI  A  +GA 
Sbjct: 15  ISELADVAGAVVLAGDERGRVRGVAQAAQSVEPGDLFVALPGARTHGANFISVAQERGAA 74

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A++   A +         +   +LV    R  L    + +YG     +  + VTGT+GK+
Sbjct: 75  AVLTDEAGAACLGGTDAMA---VLVAAAPRASLGALCALVYGDPSARLTVVGVTGTAGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ + + +G ++  IG   T I S +  +  TTP        L+ ++  GV  V 
Sbjct: 132 TTTYLLESLFRAAGRATGVIGTVETRIGSQSVASSFTTPEAPQTQSLLAVMAEAGVEVVL 191

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAI 245
           +E SSH LD  R+DG +  AG FTNL  DH+D+H   ++YF AK +LF+         A+
Sbjct: 192 MEVSSHALDFGRVDGTRFAAGGFTNLSHDHLDHHGDMESYFQAKAKLFQPGSSVAARRAV 251

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLF 304
           I  DD++ +  M R       V +      +  L++       QQV +    +  F F  
Sbjct: 252 ICVDDSWGQR-MSRVARGSVTVATGDEAADWAVLERREDELGAQQVLVRGPRERQFAFRL 310

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NA++A GL  A G+     L        VPGR E V    +     VDYAH
Sbjct: 311 GLLGRHNAANAVLAVGLAEATGVRVTEELVRGWADIAVPGRLERVQA-GQDFLAVVDYAH 369

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              SL  +L+ +R  T+GRI VV G GGDRDQGKRP+MG+++   A++ +VTDDNPRSED
Sbjct: 370 KPESLAKVLQALREHTAGRIAVVVGAGGDRDQGKRPMMGEVSASGAELVVVTDDNPRSED 429

Query: 425 PEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P  IRA+++ G  G       E  +R EAI  A+      D ++VAGKGHET   V NG 
Sbjct: 430 PAAIRAQVLAGAQGSSRAEVWEVASRAEAIARAVRWARAGDTVLVAGKGHETYQEV-NGV 488

Query: 480 KKMSVDCDIIREIL 493
           K    D +I+   +
Sbjct: 489 KSHFDDREILARAI 502


>gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
 gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
          Length = 496

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 149/470 (31%), Positives = 228/470 (48%), Gaps = 14/470 (2%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V +DSR + +  +FVA+ G   +G  ++     +G    VV   Y  +   A+  ++  
Sbjct: 26  QVKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEKGCRYAVV-PTYVAKGLIASNSTDLN 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I+  D+    LS    +  G  P +++ VTGT+GKSSV+ ++ Q+    GLS   IG   
Sbjct: 85  IIGSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKSSVSYYIAQLADAMGLSGAIIGTFG 144

Query: 152 TIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
               +  +  + TTP  + + K L+  +  GV  V+ EASSH LDQ R+ GI++    FT
Sbjct: 145 VGKLNNLESAKQTTPDVLTMLKTLAQFNQDGVDLVAFEASSHALDQDRVAGIEIDTAVFT 204

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYH T ++Y  AK +LF   L     A+  +   Y   + + +     +    
Sbjct: 205 NLTQDHLDYHGTMESYATAKRKLFR--LDTLKHAVFCSKSDYCNFMAEDSKGD--KSYYG 260

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   ++ V          +  +   +    PL GEF V NA+ A      +  D  
Sbjct: 261 ERPSDDFVIRDVTYHSLGCSFLLLTKSGHYSVELPLMGEFNVDNAVAALASLWPLFDDKV 320

Query: 331 LVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            ++  L  L   PGR E V     +    + VDYAHT ++L + LK +   + G I  VF
Sbjct: 321 ALISSLTSLKGAPGRMERVTLSEGANVPVVLVDYAHTPDALSVALKALAVHSKGPITCVF 380

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKG 443
           GCGGDRD+GKRP M + ALDLAD  ++T DNPRSE P +I  + + G+        I   
Sbjct: 381 GCGGDRDKGKRPEMMRAALDLADKVVLTTDNPRSEIPSEIMQDALSGVAECERQRVILDE 440

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AI  AI   +  ++++VAGKGHET   +  G K    D +     L
Sbjct: 441 DRRSAIEFAIATASINEIVLVAGKGHETYQEI-GGVKSHFDDREEALNAL 489


>gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 494

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 218/468 (46%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  + ++++DSR    G IFVA  G   D H F    + QGA+ IVV       +    I
Sbjct: 20  DINVTDITTDSRTASEGSIFVASKGYTVDSHKFCQNVVDQGAKVIVV-------NHQQDI 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  SL A  LY      +  + VTGT+GK+S+A+ +  I +  G  S
Sbjct: 73  NGDVTQVIVPDTLRVASLLAHTLYDFPSHQLTTIGVTGTNGKTSIATMIHLIYRGLGKGS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +     +    +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINEHKTRGANTTPETVSLTKKIKQAVDENAEAMTMEVSSHGLSLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE  A++  DD +SK +   A
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYAVLNNDDDFSKYL---A 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + + G       + K +                 +    P  G+F + N + A 
Sbjct: 250 SVTPYEIFTYGIDHDAQFMAKNIQESLQGVHFDFDTPIGTYSVKTPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     ++  +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSMEDIVRVVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVKPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLIGMAGERDLTKTPEMGAVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHN 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            ++E  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 HYVEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|327399670|ref|YP_004340539.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
 gi|327182299|gb|AEA34480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
          Length = 459

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 146/469 (31%), Positives = 233/469 (49%), Gaps = 29/469 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++  DSR +  G++F AI G K D + F+P  +A+    +VVS              +  
Sbjct: 14  DMVYDSREVSEGFVFFAIKGTKVDANRFVPNILAKFKRVLVVSE---------NGFDDER 64

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + VD+ RK + L A   +  HP   L V G +G +   +    + +    +S  IG T 
Sbjct: 65  CIKVDDVRKCMGLAADHFF-NHPSKKLKVVGITGTNGKTTTTY-LLRSIFDNSEIIGTTG 122

Query: 152 -TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+         TTP  + L + L+ ++     +   E SSH L  +R++G+      FT
Sbjct: 123 WTLKDERFKLNNTTPESLDLHRILNRMAMANSEYCFTEVSSHALSFNRIEGVDFALKVFT 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D++   + Y   K+  FE L PK    ++ ADD+Y + ++  A       +S 
Sbjct: 183 NISQDHLDFYDNLENYAKTKLSFFERLKPK----VVNADDSYGRMLIDAA------TISY 232

Query: 271 GYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G+    FI         +  +  ++V  +      PL G++ +YN + A G+ +  G+D 
Sbjct: 233 GFSDFAFIKPIVYEYSLDGIKAKLNVARRTISITSPLIGDYNLYNIMAALGVALFFGVDF 292

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A + E + K    PGR EF      G    VDYAHT +++  +L+ +  I  GRII VFG
Sbjct: 293 ARIEEGIAKSKGAPGRLEFF--QKDGAYAVVDYAHTDDAMRNVLEALNKIKKGRIITVFG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRI 446
            GGDRD+ KRP MG IA  L+D+ +VT DNPRSE+P  I  +I+ GI      I + +R 
Sbjct: 351 AGGDRDRTKRPKMGSIAESLSDVVVVTSDNPRSEEPLAIIDDILEGISDRDRVIVEPDRF 410

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           EAI+ A+ M  K D++ + GKGHE   I+ +       D +++R +  L
Sbjct: 411 EAIKKALGMAEKGDLVTILGKGHEDYQILKDKTIH-FDDREVVRRLWNL 458


>gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
          Length = 491

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 218/475 (45%), Gaps = 20/475 (4%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   + +DSR +Q G  F+A  G   DG  F+ QA+  GA   +V     L    A    
Sbjct: 20  VTGTLRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVE----LDGVEAFGFE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +  +  + + +      A   +    +   ++A TGT+GK+S A +  Q   R G     
Sbjct: 76  DARVATLPDLKAVTGDIAHAYFEHPSQRLKLVATTGTNGKTSTAWWTAQALTRLGQRCGV 135

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G          +   LTTP P+ L  A      QG    ++EASS G+ +HRLD  ++ 
Sbjct: 136 MGTLGVGEPGAVRATGLTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAEID 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTN  RDH+DYH T  AY+ AK RLF    P    A+I  DD     +         
Sbjct: 196 VALFTNFTRDHLDYHGTMAAYWEAKRRLFA--WPGLKAAVINVDDEQGARLAAEPLALDV 253

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              +V    + +  + V  +      T+       +    L GE+ V+N L   G   A+
Sbjct: 254 WTYAVNGAARLV-ARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLRAL 312

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SG 382
           G+  A     +  L  VPGR + V        + VDYAHT ++LE +L+ +R +     G
Sbjct: 313 GVALADAAAVVPALTPVPGRMQRVP--GEHVEVVVDYAHTPDALEKVLQALRPLAAARGG 370

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE- 441
           R+  VFGCGG+RD  KRP+MG IA  LAD  + T DNPR E P  I ++I+ G+ G  E 
Sbjct: 371 RLWCVFGCGGNRDATKRPLMGAIAARLADRVVATSDNPRDEAPCFILSQILAGVAGHDEV 430

Query: 442 --KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +R EAI  A+      DV+++AGKGHE    +  G ++   D    R  L 
Sbjct: 431 DVIEDRHEAIAYAVANAAPGDVVLLAGKGHEDYQEIK-GVRRPFSDETEARAALA 484


>gi|225175502|ref|ZP_03729496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168831|gb|EEG77631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 502

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 143/484 (29%), Positives = 229/484 (47%), Gaps = 29/484 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +I+ ++  S  ++ G +F  + G +  G  ++ +         V + A ++    A 
Sbjct: 20  PDLEISGIAYHSGKVRPGDLFFCLPGTRSHGRRYVEE--------AVAAGAVAVVSDMAE 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           + ++  ++ V + R  L+L ++  Y      +  + VTGT+GK++    +  + Q SG +
Sbjct: 72  LETSATVVTVPDVRMALALVSACFYDYPSRELAMIGVTGTNGKTTTTYLIDALLQNSGAA 131

Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G     I      +  TTP    L   L  +  +GVT+ ++E SSH L  HR  G 
Sbjct: 132 TGLLGTVRYHIRGEEFPSLATTPEASELQAILRRMKDEGVTYTTMEVSSHALAWHRTIGC 191

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------KESPAIIYADDAYSKEV 256
                  TN+  DH+D+HQT   Y  +K +LF           +   A+I  DD + +  
Sbjct: 192 DFDTVVLTNITEDHLDFHQTFDHYLASKSKLFSWQGSFPLKGGRPRRAVINGDDKHWQHF 251

Query: 257 MKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +       V+  G           V    +     +       +    + G F VYN+
Sbjct: 252 ADQTPG---EVMLYGLSNHCHVRANDVKVERDAVNFRLETPVGGTEITLKMTGLFSVYNS 308

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GID A +   +E +  VPGRFE V    +   + VDYAHT + LE +L+ 
Sbjct: 309 LAAISVGLLEGIDLARIKAVMESVAGVPGRFELVDA-GQNFTVIVDYAHTPDGLENVLQA 367

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R     R++ VFGCGGDRD+ KRP+MG+ A   +D  IVT DNPRSEDPEKI  EI+ G
Sbjct: 368 AREFAPARVLTVFGCGGDRDRTKRPLMGEAAGKYSDYCIVTSDNPRSEDPEKIIDEILPG 427

Query: 436 IPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +   I+K       +R  AIR A+E+  K DV+++ GKGHET  +  +       D  I 
Sbjct: 428 LENQIDKSAYEIEPDRKAAIRRAMELAQKDDVVIITGKGHETTQVFRDHTIT-FDDRQIA 486

Query: 490 REIL 493
            E++
Sbjct: 487 GELI 490


>gi|255320231|ref|ZP_05361416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
 gi|255302670|gb|EET81902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
          Length = 499

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 143/488 (29%), Positives = 236/488 (48%), Gaps = 34/488 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAI----VGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           ++W  +  +    DSR +QAG IF+A+      +K    +F   A++QGA  I+  S   
Sbjct: 15  VEWANQPFSGFCLDSRKVQAGQIFIALDSLSQSDKT--RIFAENALSQGALGIISESDLG 72

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQ 134
           +          T   V    R+++  +  +        +   ILAVTGT+GK++++  + 
Sbjct: 73  V----------TTAWVCPQVRQWMGGWQKQYLQATRPVNSARILAVTGTNGKTTISRLIA 122

Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           ++          +G T   I      +  TT   + L  AL   SSQG   V++EASSHG
Sbjct: 123 ELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGANFVALEASSHG 182

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L+Q RL+G ++    ++NL RDH+DYH T  AY +AK  LF+        A+I  DD Y+
Sbjct: 183 LEQGRLNGCEIEIAIYSNLSRDHLDYHGTLTAYADAKALLFK--FATLRSAVINLDDDYA 240

Query: 254 KEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
             +++ A     R      S+ +      +  +       +  +     ++    PL G+
Sbjct: 241 PVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLKGAKFKLIAPTGEYVVQSPLLGQ 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F + N + +       G   + +L  + +L   PGR + +    R     VDYAHT ++L
Sbjct: 301 FNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDAER--LFVVDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L  ++     ++  +FGCGGDRD+GKRP+M + AL+ AD  I+T DNPR+E PE+I 
Sbjct: 359 TQVLVTLKRHVQHQLWAIFGCGGDRDRGKRPLMTQAALNDADPVILTSDNPRTESPEQIF 418

Query: 430 AEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            ++ H    G     E  +R EAI+ A++     D++V+AGKGHE    + +G +    D
Sbjct: 419 TDMKHEVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKGHENYQEI-DGVRHWFDD 477

Query: 486 CDIIREIL 493
              ++  L
Sbjct: 478 VVEVQSAL 485


>gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 494

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 224/468 (47%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ V  I ++   +S
Sbjct: 73  PANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMVHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T + Y +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + K +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
 gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
          Length = 501

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 148/503 (29%), Positives = 233/503 (46%), Gaps = 36/503 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++N  +      R R   ++ +DSR ++AG  FVA  G   DG  ++ +A+ QGA A++
Sbjct: 6   QILNNAAEAVAWLRSRVQGDLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAAVL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
           V +        A   S   I  +   +    L A + +       ++LAVTGT+GK++ A
Sbjct: 66  VEADG----LQAFDLSGDSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTA 121

Query: 131 SFVQQICQR----SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            ++     +    +      +G     +    +   +TTP P+ L +A    + QG+   
Sbjct: 122 WWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLAAC 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++EASS G+ +HRLDG K+    FTN  +DH+DYH +  AY+ AK +LF+   P    A+
Sbjct: 182 AIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFD--WPGLPAAV 239

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  DDA+   +  R       V SV  QG      K +         T+   G       
Sbjct: 240 VNIDDAHGARLWARLQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNT 299

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G++ V N L        +G+     ++    L  VPGR + +    +   + VDYAH
Sbjct: 300 RLVGQYNVSNLLGVLATLRCLGLTLEQAVQACADLEPVPGRMQQIVKPGQ-PLVAVDYAH 358

Query: 365 TSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           T ++LE  L+ ++       G++  VFGCGGDRD  KRP+MG+ A   AD   VT DNPR
Sbjct: 359 TPDALEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPR 418

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIR----------TAIEMLNKQDVLVVAGKGHET 471
           SE PE I  +I+ G+          +A+            AI     +DV+++AGKGHE 
Sbjct: 419 SEVPESIIDQILAGMQAG-------QALHVQADRAAAIAQAIARAEARDVVLIAGKGHED 471

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
               T G +    D    ++ L 
Sbjct: 472 YQE-TKGVRHPFSDMAEAQKALA 493


>gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
          Length = 515

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 232/503 (46%), Gaps = 29/503 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL + P   R  ++  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A
Sbjct: 17  LAELADQLGL-PAPERNAEVTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++   + + +       +  P LVVD+ R  +   A  +YG    ++L   +TGTSGK++
Sbjct: 76  VLTDPSGAER----VAATGLPALVVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRS-----GLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSS 179
            A  V+   + +     G    ++G   T    I      +  TTP    L    + +  
Sbjct: 132 TAYLVEGGLKTARGTDEGGGGRRVGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMRE 191

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G   V++E SSH L   R+DG       FTNL  +H+++H   + YF AK +LF     
Sbjct: 192 RGTDAVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSDMEDYFRAKAQLFTPERS 251

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGK 298
           +     +  DD Y + + K A        + G+       + V         T I  E +
Sbjct: 252 RLGV--VNVDDEYGRRLAKEAGVPVVTYSAEGHPDADWRTEDVRVGPLDSSFTVIGPEDQ 309

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PLPG F V N L A     A G+D     + +  +  VPGR E V    +    
Sbjct: 310 RVAARSPLPGPFNVANTLAAIVALAAAGLDPQAAADGVAAVPGVPGRLERVDA-GQPYLA 368

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH ++++E +L+ +R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T D
Sbjct: 369 VVDYAHKTDAVESVLRTLRRVTEGRVHVVLGCGGDRDITKRAPMGAAAARLADTAVLTSD 428

Query: 419 NPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSEDP  I A ++ G                +R  AI  A+      D ++VAGKGHE
Sbjct: 429 NPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHE 488

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G  +   D  ++RE +
Sbjct: 489 QGQDIA-GVVRPFDDRQVLREAI 510


>gi|283850519|ref|ZP_06367807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
 gi|283574090|gb|EFC22062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
          Length = 487

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 148/466 (31%), Positives = 234/466 (50%), Gaps = 16/466 (3%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           S  +  G +FVA+ G   DG  FIP A+A+GA  +V      L   +        ++V +
Sbjct: 28  SAKVLPGGVFVAVAGPVADGERFIPDALARGAAHVVAGPGTVLPAGATA-----RLVVAE 82

Query: 97  NTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153
           N +  L   A+  YG  +    + A+TGT+GK+++   ++++   +G     +G  +   
Sbjct: 83  NPKAALGRLAAARYGTDRMAMPVAAITGTNGKTTITYLIERLATAAGRKVGVLGTVAYRW 142

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
              +++  LTTP  + + + L+ + + G     +EASSH + Q RL G+   AG FTNL 
Sbjct: 143 PGVSRNASLTTPDCLTIHENLAAMHAAGCDLAVMEASSHAIAQDRLAGLAFAAGIFTNLT 202

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +DH+DYH+  ++YF AK  LF   L     A++  DD + + +++    A    L+    
Sbjct: 203 QDHLDYHKDMESYFEAKAGLFRRYLADPRNAVLNFDDPFGRRLLEEFPQALGYGLTAPPA 262

Query: 274 GKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           G    L      H    Q++ +           P+PG     N L A G  + +G+ +A 
Sbjct: 263 GFPRILAGTVLGHGREGQRLDVRHGDAAHAVASPMPGRHNAQNVLAAMGAALVLGLPAAA 322

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
                   H  PGR E +  N R   ++VDYAHT ++LE +L   R  T G++  VFGCG
Sbjct: 323 FAAL-ADCHGAPGRLERI-ANPRDLTVFVDYAHTPDALENVLGAAREFTKGKLFAVFGCG 380

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEA 448
           GDRD+ KRP+M       AD+A++T DNPR EDP  I A+    + G    + + +R  A
Sbjct: 381 GDRDRTKRPLMAAAVARFADVAVLTSDNPRHEDPLAIMADARPGLAGARRAVAEPDRRRA 440

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           I  A+  +  +DVLV+AGKGHET   + +  K    D  ++RE+ G
Sbjct: 441 IGLALSEMGPEDVLVIAGKGHETYQQIGD-VKHPFSDAAVVRELTG 485


>gi|291003734|ref|ZP_06561707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 486

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 154/469 (32%), Positives = 227/469 (48%), Gaps = 26/469 (5%)

Query: 41  QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSATIRSNTPILVVD 96
           + G +F A+ G +  G  F   A+  GA A++   A      L D          +LV D
Sbjct: 2   RPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHD 61

Query: 97  NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153
           + R  L   A+++YG+  +   IL VTGTSGK++    ++     +G ++  +G   T I
Sbjct: 62  DPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETRI 121

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +    D+  TTP    L   L+ +   GVTHV +E SSH L   R+ G +   G FTNL 
Sbjct: 122 AGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLS 181

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +DH+D+H+    YF AK  LF+     E   ++  D  + ++++K     G   +S    
Sbjct: 182 QDHLDFHRDLDDYFQAKALLFDGRSEHE---VVCTDTDWGRKLVK----PGTITVSTTGD 234

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +           +Q+ T    G         LPG F + NAL+A G+  A  + +  +
Sbjct: 235 ASWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWAI 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              L ++  VPGR E V    +     VDY+H   ++  +L   R    GR+IVV GCGG
Sbjct: 295 ERGLAEVD-VPGRMERVAL-GQDFTAVVDYSHKPGAVSAVLDAARAQAEGRVIVVLGCGG 352

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGN 444
           DRD  KRP+MG+ A   + + IVTDDNPRSEDP  IRA ++ G            IE+G+
Sbjct: 353 DRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERGD 412

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R EAI  A+   +  D++VVAGKGHET   V  G      D + +   L
Sbjct: 413 RREAIAEAVARASSGDIVVVAGKGHETGQEVA-GVVHPFSDREELAAAL 460


>gi|290969167|ref|ZP_06560692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780673|gb|EFD93276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 499

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 160/506 (31%), Positives = 249/506 (49%), Gaps = 29/506 (5%)

Query: 9   KDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           K   EL  Q+S       +   ++  +++DSR +Q G +FV + G   DG  F  QA A+
Sbjct: 2   KTIEELCGQVSATHEVRGDARVQVRGITADSRDVQPGDLFVCVAGAHVDGKTFAAQAAAK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++ +    L D +         ++V +    +       Y    + +  + VTGT+
Sbjct: 62  GAVAVLTTEPLPLPDGTV-------QIIVPDIHAAVEEMVPFFYDYPGKKMRMIGVTGTN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    +  I + +G     +G    +          TTP  + L + L+ + ++G+T
Sbjct: 115 GKTTTTHIIAHILRTAGYHVGVLGTIHALMDDLELPIHNTTPDVVELQRFLAQMYARGIT 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----L 238
           HV +E SSH L   R+ GI+     FTNL +DH+D+H+T + Y  AK +LF  L     +
Sbjct: 175 HVVMEVSSHALALQRVAGIEYDTAVFTNLTQDHLDFHKTMENYAAAKAKLFRGLTAGTPV 234

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
            K   A++  DD +S  V+ R       VL+ G +    +    +          ++   
Sbjct: 235 KKGKTAVLNRDDPWS--VLMRKACGTAEVLTYGTEREASLRGTHLQVALKHSAFDVTGPF 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D      + G F VYN L A G   A G+D   + + ++  H VPGRFE V    +   
Sbjct: 293 GDMHLQMNITGLFNVYNTLAAIGAAYAEGVDPETIGKAMQTFHAVPGRFELV-EAGQDFA 351

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VDY+HT +SLE  L   R +   +IIVVFGCGGDRD+ KRPIMG+IA   ADI +VT 
Sbjct: 352 IVVDYSHTPDSLEKALTTARAMNPHKIIVVFGCGGDRDRTKRPIMGRIAATHADIPVVTS 411

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-------TAIEMLNKQDVLVVAGKGHE 470
           DNPRSE+PE I AE+  G+   ++ G + E +         A+ + N  D++++AGKGHE
Sbjct: 412 DNPRSENPEAIVAEVAAGVKEALQPGQQYEVLTDRRRAIRRAVALANTGDMVLIAGKGHE 471

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496
           T  I+ +       D +  R  +  +
Sbjct: 472 TYQILKDKTIH-FDDREEARNAVAAL 496


>gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL001PA1]
 gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA2]
 gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA3]
 gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA4]
 gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL060PA1]
 gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA2]
 gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL103PA1]
          Length = 499

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 231/476 (48%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     ++        + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAI----LAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G   +   +  +TGT+GK++ A  V+     +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKVFGHPSDAMTMFGITGTNGKTTTAFLVEAGLCAAGHHVGTI 131

Query: 148 GPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +     I  DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGV--INVDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++   +Q     +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWHAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L     VPGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                I+ G R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQSIGS-EVLPFDDREVIR 483


>gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
          Length = 494

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 225/468 (48%), Gaps = 21/468 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  SANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 V S G   +   + + +                 +    P  G+F + N + A 
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYVGKFNISNIMAAM 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     +++ +E L  V GR E V   S    + +DYAHT++ +  ++  ++  
Sbjct: 310 IAVWSKGTSLETIIKAVENLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNELIDAVQPF 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
              ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G    
Sbjct: 369 VKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQ 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +IE  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 NYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD 475


>gi|13881902|gb|AAK46501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 581

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 150/471 (31%), Positives = 220/471 (46%), Gaps = 17/471 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 104 EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 160

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 161 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 220

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 221 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 280

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M     
Sbjct: 281 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA 340

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V +      +            QQ T I   G        LPG + V N LVA  +
Sbjct: 341 DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAI 400

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L  +     
Sbjct: 401 LDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVLTTL-AHPD 457

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
            R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G      
Sbjct: 458 RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG 517

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
               +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 518 DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 567


>gi|94970661|ref|YP_592709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552711|gb|ABF42635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 509

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 158/497 (31%), Positives = 242/497 (48%), Gaps = 23/497 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           DF +LI+   I         I+ V  DSR ++ G+ F+A+ G+  DG+ +I +AI  GA 
Sbjct: 2   DFFQLIDGAEILSCSG-NAGIHGVEYDSRRVKPGFCFLAMRGDSTDGNRYIDKAIELGAV 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AIV  SA  +       R      +  + R+ LS  ++  Y KHP   LA+TG +G +  
Sbjct: 61  AIVTDSATEIP------RPGVAWAICAHGRRALSRLSANFY-KHPAEKLAITGVTGTNGK 113

Query: 130 A---SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                 +  + + +G  +  IG     I+        TTP P+ L +      ++G T  
Sbjct: 114 TTTTYILDSLLRHAGRKTAMIGTVEYHIADRVIPAPHTTPEPLELNQIFREALNEGATEA 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPA 244
            +E SSH L Q R+ GI      FTNL RDH+D+H T ++YF +K  LF+    +     
Sbjct: 174 VMEVSSHALAQERVFGIPYDVAVFTNLTRDHLDFHGTMESYFQSKATLFKGCGTEPPRVG 233

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II  DD ++++ MK A+    +V + G+     H +         +  +           
Sbjct: 234 IINRDDEWAEKFMKVANKHCDKVYTYGFAAGDFHAENAEMTSTGTRFDLVTPEGRVPIFS 293

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G+  V N L AA   +  GI    + E +  +   PGRFE V +  +   + VDYAH
Sbjct: 294 PLIGKVNVLNLLAAAAAAMERGIHLDSLAESITHIVRPPGRFERV-SAGQPFTVIVDYAH 352

Query: 365 TSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           T ++L  + K  R        GR+I +FGCGGDRD+ KRP+MGK A + +D+ ++T DNP
Sbjct: 353 TDDALRNVTKLARDFVQQAGGGRVITLFGCGGDRDKTKRPLMGKAAGEGSDLVVLTSDNP 412

Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           RSEDP+ I  +++ G+      FI + +R +AI  A+      DV+++AGKGHE      
Sbjct: 413 RSEDPQAIINDVLPGLAQTPIKFIVEPDRRKAIGIAVANARLGDVVILAGKGHEKTQTTR 472

Query: 477 NGEKKMSVDCDIIREIL 493
            G      D  +  E L
Sbjct: 473 EGVFP-FDDAQVALETL 488


>gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 488

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 149/490 (30%), Positives = 243/490 (49%), Gaps = 24/490 (4%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L++ L    +   +   I  ++++S+ ++ G +F+AI G   DGH FI QAIA GA+
Sbjct: 3   LRHLLDILEYEELYGSDAVDITGITNNSKTVKPGDLFIAIAGYSIDGHKFIDQAIAAGAK 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKS 127
           A++       Q        + P + V ++RK L+L A R Y   ++   ++ +TGT+GK+
Sbjct: 63  AVIGEKEIGKQ--------SVPYIKVTDSRKALALAAKRFYKNEQNKAIMIGITGTNGKT 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           + +  ++ I +  G +    G    I +         TT   + L K L+  + Q    V
Sbjct: 115 TTSYMLKHILETCGHTCSLFGSVQNIVNGQVLPATTNTTMDALELQKQLAASNDQ---VV 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E +SH L QHR+ GI+   G FTNL +DH+DYH + +AYF AK+RLFE+L P    A+
Sbjct: 172 IMEVTSHALMQHRVYGIEFDYGLFTNLSQDHLDYHGSMEAYFGAKLRLFEQLAPA-GKAV 230

Query: 246 IYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I A   + +  +          + ++G     + L  V  I    Q T++ + K +D   
Sbjct: 231 IQAQGEWGEAFLASLKQRDVPYIYTLGGAEATLQLSNVR-IERPMQATLAEDHKAYDLKV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL GE  VYNA +A      +G+++  +L  LEK   VPGRFE +    +G  I +DYAH
Sbjct: 290 PLLGEHNVYNAAIAFLTARLLGLNARKILAALEKFPGVPGRFELIHHP-KGANIVIDYAH 348

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++    LK    +++ RII VFG  G+RD  KR  M  ++   +D  I+T D+   E 
Sbjct: 349 TEDAFYHCLKTAEELSARRIIHVFGFRGNRDTSKRQAMVNVSKRFSDFIILTMDDLNGES 408

Query: 425 PEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            E++R ++ +       +   +R  AI  A E+    D + + GKGHE      +     
Sbjct: 409 FERMRKKLENYQLGENGVVIPDRTSAIAHAWELAENGDWVFITGKGHEAY--RQSYHLPT 466

Query: 483 SVDCDIIREI 492
             D D ++ +
Sbjct: 467 QSDKDTVQHL 476


>gi|88809251|ref|ZP_01124760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
 gi|88787193|gb|EAR18351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
          Length = 499

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 149/489 (30%), Positives = 225/489 (46%), Gaps = 20/489 (4%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       +  ++ DSR +  G +F+ + G + DG  F PQA+A GA A+++    +  
Sbjct: 13  VPSGLANATVTSLTCDSRCVGKGSLFIGLPGERVDGGSFWPQALAAGAAAVLIGEQAAAS 72

Query: 81  DFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
              A       +LV+ +    +    AS  + +    +  + VTGT+GK++    ++ + 
Sbjct: 73  HPPAF---GDAVLVLPDPVSVWAGELASAFWQQPSTRLGLIGVTGTNGKTTTTHLIEHLS 129

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           Q  G  +   G               T S    L   L+     G    ++E SSH LDQ
Sbjct: 130 QACGQPAALFGTLVNRWPGHSLTATHTTSVADRLQAQLAEALEAGTQMAAMEVSSHALDQ 189

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPAIIYADDAYSK 254
           HR+ G +     FTNL +DH+DYH + +AYF AK RLF    L+ +   A++  DD + +
Sbjct: 190 HRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKSRLFASPYLVGEGPRAVVNTDDPWGR 249

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++  R     C   S+        +  +          +     +  F  PL G F + N
Sbjct: 250 QLADRL-GERCWSSSLETHADLT-MGDLRMTSAGVDGLLVTPLGEGRFHSPLVGRFNLMN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-----RGGRIYVDYAHTSNSL 369
            + A G  +  G+   L+L  +     VPGR E V             + VDYAHT + L
Sbjct: 308 LMQAVGALLQQGLPLGLLLASIPSFRGVPGRMERVVVKGSAMIDEHPSVIVDYAHTPDGL 367

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L   R  T GR++ +FGCGGDRD+GKRP M  IA  LAD  ++T DNPR+E+P +I 
Sbjct: 368 RNALLASRPFTKGRLVCLFGCGGDRDRGKRPQMASIAASLADRVVITSDNPRTENPNQIL 427

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            +I+ G+P    F    NR  AI  AI      D+L++AGKGHE   I+  G K    D 
Sbjct: 428 EDIVVGLPTGTEFSVDVNRSTAIANAIREARPDDLLLIAGKGHEDYQILDIG-KIHFDDR 486

Query: 487 DIIREILGL 495
           +   + L L
Sbjct: 487 EEAEKALRL 495


>gi|222053876|ref|YP_002536238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
 gi|221563165|gb|ACM19137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
          Length = 508

 Score =  335 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 161/510 (31%), Positives = 255/510 (50%), Gaps = 41/510 (8%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+  +++  M    +  I  +  DSR +Q G +F A+ G   DG+ FI         
Sbjct: 3   LSQLVKSVAVLDMVGDVDPDITGLFYDSRKVQPGGLFFALKGVASDGYAFIEV------- 55

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
             V + A ++        ++   + V + R  +SL A+  Y        ++ +TGT+GK+
Sbjct: 56  -AVKAGAVAVVIEDDRTPADIAWVRVADGRLAMSLMAAAFYANPAAGLPVVGITGTNGKT 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I ++ GL +  +G  +      +     TTP  + L + L  L   G   + 
Sbjct: 115 TTTFLLESIFEKGGLPAAVLGTVNYRFGDLSIPAPNTTPESVDLQQTLRKLVDAGAKGIV 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE----- 241
           +E SSH L Q R+DG     G FTNL RDH+DYH   ++Y  +K RLF ELL  +     
Sbjct: 175 MEVSSHALQQRRIDGCSFNVGVFTNLTRDHLDYHLDMESYLQSKTRLFSELLVPDEKKPE 234

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF 300
             A+I  DD Y + + + A    C V++ G +    I+ + V    +    T++      
Sbjct: 235 RHAVINTDDEYGRRIAQAAA---CPVVTYGIEKSADINAENVEFSVSGISCTLATPKGRI 291

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G F +YN + AAG  +A+G+    + E LE    VPGR E V  N+ G  + V
Sbjct: 292 ELRSMLVGRFNLYNIMAAAGAGVALGLPLESIKEGLEHHGQVPGRLERV-ENALGVTVLV 350

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE +L  +  +  GRII +FGCGGDRD+GKRPIMG+IA   +D++I+T DNP
Sbjct: 351 DYAHTGDALENVLLTMTELKKGRIITLFGCGGDRDKGKRPIMGEIAGRYSDLSIITSDNP 410

Query: 421 RSEDPEKIRAEIIHGI------------------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           R+E+P +I A++  GI                   GF+    R +AIR A++     D++
Sbjct: 411 RTENPAEIMAQVREGIVRLGICEYSSYEAAIFQEKGFVSIEQRQDAIRLAVKAARPGDIV 470

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           ++AGKGHE   I+   EK    D ++  + 
Sbjct: 471 LLAGKGHEDYQIIGK-EKFHFDDREVAAQA 499


>gi|160944894|ref|ZP_02092121.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444078|gb|EDP21082.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
          Length = 492

 Score =  335 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 146/508 (28%), Positives = 236/508 (46%), Gaps = 39/508 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+      L+             +I ++  DSR    G +FV IVG + D H F 
Sbjct: 1   MKLEQLMEGVPFTLV-------QGSLGTEIADIIYDSRKAAPGLLFVCIVGTQRDSHTFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A+G  A+V+     L            ++ V+++R  ++L ++ L+G  P   + +
Sbjct: 54  ADCAAKGVSALVIQHDIDLSTLP-----GVTVVKVESSRYAMALMSANLFGN-PARQMTM 107

Query: 121 TGTSGKSSVA---SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
            G +G          ++ + + +G     IG          +D   TTP    L K    
Sbjct: 108 IGVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFRE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
               G     +E SS GL   R+ G+    G FTNL  DHI    H+T + Y + K +LF
Sbjct: 168 FLDAGCDTALMEVSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---KVCAIHNKQQV 291
           +         ++  DD  +  +++      C++++ G   K  + +   K+   H+   V
Sbjct: 228 KRC----DVGVVNIDDENTAALLE---GHTCKLVTYGRDEKADYRETGYKLLRTHDFLGV 280

Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              V GKD  D    +PGEF VYNAL A  +   +G+  A + + L K  VV GR E V 
Sbjct: 281 AFHVTGKDEMDVKVNMPGEFSVYNALAALAVGKVLGLPDAAIHDGLGK-CVVKGRVELVP 339

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            + +   I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +A
Sbjct: 340 ISKK-FTILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMA 398

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D +I+T+DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V
Sbjct: 399 DFSILTEDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAV 458

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
            GKGHET      G K   ++ +++ E 
Sbjct: 459 IGKGHETYRD-REGVKTPFLERELLEEY 485


>gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 495

 Score =  335 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 144/519 (27%), Positives = 237/519 (45%), Gaps = 49/519 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +       E+I+       + ++ + +E+  ++++I    +FV I G K D H  I
Sbjct: 1   MKLIENAEGLDIEIISG------ELQD-EFSELVFNTKNIVKDCLFVCIKGAKFDAHDAI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            + + QGA+A+VV             R +  ++ V +TR  L+  ++  +    + +  +
Sbjct: 54  DEIVKQGAKAVVVQKDIK--------RDDICVIKVSDTRVALARLSAAYFSHPAKKMKII 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++ +  +Q++  ++      IG    TI    +    TTP    L K     
Sbjct: 106 GITGTKGKTTSSYMLQKLLGQNA-KVGLIGTNGITIGDTHRSTLNTTPESYELHKTFKEC 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
                 +V +E SS  +   R++GI    G FTN+  DHI  D H+    Y   K   F+
Sbjct: 165 LDANCEYVVMEVSSQAVMLKRIEGICFDIGIFTNISHDHIGPDEHKDFDEYLMYKSLFFK 224

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---- 291
           +        I+  +D ++  V+K + +          +G    +K +  I NK  +    
Sbjct: 225 QC----KNTIVNIEDEHANYVLKTSDSKQKYTFG---KGGDFDIKNIEYISNKDFLGTRI 277

Query: 292 ----------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                       SV  +  D    +PGEF VYNAL A    I  G+  A +   L+    
Sbjct: 278 DIKCREEIAEKYSVNNEISDIYVGIPGEFNVYNALSALSAAIICGVKEADLKNALKD-SR 336

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GR E V   S    + +DYAH + S E ++  +R     R+++VFG GG+R + +R  
Sbjct: 337 VNGRME-VAYTSHDFNVVIDYAHNAISTESLIHTLRNYKPKRLVIVFGSGGNRSKDRRYS 395

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLN 457
           MG+I   +AD +IVT DN R E  E I A+II  +      +I   +R EAI  +IE   
Sbjct: 396 MGEICGKMADFSIVTADNSRFEKTEDIIADIIEKLKPTGGEYITIPDRKEAIFYSIENAK 455

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           K D++ + GKGHE    + NG +   +D +++ E L  I
Sbjct: 456 KGDLIAIIGKGHEDYQEI-NGVRHHFLDREVVDECLEKI 493


>gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 483

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 139/505 (27%), Positives = 248/505 (49%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR +  G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLQNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+A GA A++ S              +   ++ ++     +  A+R Y       +++
Sbjct: 54  SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+++ +RSG  +  IG    I       +  TTP  I L K  + +
Sbjct: 106 GITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   +E SS G+   R+   + +AG  TN+  DH+D+H + + Y  AK + F  L
Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNIISDHLDFHGSLEEYIAAKKQFFASL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
            P++  A++  D  Y+   +     +  R +S   +Q       ++    +     I  +
Sbjct: 226 -PEKGIAVVNLDCEYAPSFLN---GSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQ 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+ F     L GE  VYN L +  +    +G D A ++  +  L    GR + +      
Sbjct: 282 GQVFPCETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLG--P 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             +Y+DYAHT ++L+ + + +  +    GR+I+VFGCGGDRD+ KRP+M K+  +    +
Sbjct: 340 FPVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKV-SEHYGFS 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE 
Sbjct: 399 FVTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEG 458

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I  +    +  D +++ E L  +
Sbjct: 459 YQIFKHQTI-VFDDREVVCEALAAL 482


>gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella cf. novicida Fx1]
          Length = 487

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/492 (28%), Positives = 243/492 (49%), Gaps = 23/492 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  SLVLTD--------SQEFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISY--YKNYRNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +      A    +S+  +   +++K       K +  +   G+   ++   
Sbjct: 230 NIDDEYGQRLCNMTQ-APVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL-DNDIKIVIDYAHT 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  
Sbjct: 346 PDALEKALQTLNSYNPNNLWCIFGCGGNRDISKRPIMAQIAEEYASKIVITEDNNRFESI 405

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I ++I  G       I   +R +AIR +IE  N+ D++++AGKGHE   +  NG K+ 
Sbjct: 406 ENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHECY-LDKNGAKEY 464

Query: 483 SVDCDIIREILG 494
             + +II++  G
Sbjct: 465 FDEREIIKKYAG 476


>gi|307544546|ref|YP_003897025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
 gi|307216570|emb|CBV41840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
          Length = 503

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 20/473 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR +  G +F+A+ G   DG  FI QA+  G  A++  +         +  ++  
Sbjct: 33  ALHLDSRELAEGDVFLAVPGVSVDGRDFIDQALEAGVAAVLAHAEPG-----GSASADAR 87

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           ++ ++     L      L+       ++ VTGT+GKSSV  ++  + +  G  +  +G  
Sbjct: 88  VIHLEGLAGQLGELGRSLFEVPASLELIGVTGTNGKSSVTHYIAALSRLLGRDAGMVGTL 147

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++ RLTTP P+ L  AL  L+++GV  V++EASSH L+Q RL G +L    F
Sbjct: 148 GHGRPGALREGRLTTPGPLALQSALGELAAEGVERVALEASSHALEQERLAGCRLTTAVF 207

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH +  AY  AK RLF    P+   A++  DD  ++ ++     AG RVL+
Sbjct: 208 TNLSRDHLDYHGSMAAYAAAKARLFRR--PELRLAVVNGDDPLARLMLAGLP-AGVRVLA 264

Query: 270 VGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           VG        +  V  +   Q+  I+    +      L G F + N L+A      +G D
Sbjct: 265 VGDDEAVTLRVVGVEPLPQGQRAVIATPEGERVLEIALMGGFNLTNVLLAIATLHGLGED 324

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIV 386
              +     +L  VPGR + +G ++RG  + +DYAHT ++LE  L+ +R      GR+  
Sbjct: 325 LEALFAAAAELAPVPGRMQVLG-DARGPTVVIDYAHTPDALENALQALRAHLPDQGRLWC 383

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---- 442
           +FGCGGDRD GKRP+M   A   +D+ ++TDDNPRSE    IR +I+ G+     +    
Sbjct: 384 LFGCGGDRDAGKRPLMAAAAERYSDVPVITDDNPRSEAAAAIREQILAGLSESARRSARV 443

Query: 443 -GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            G R  AIR  I  ++ +DV+++AGKGHET   +  G +    D D  +  L 
Sbjct: 444 LGGRAAAIRETIAEVDAEDVILIAGKGHETYQEIE-GVRHPFSDLDEAQAALA 495


>gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA1]
          Length = 499

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 233/476 (48%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+  +   +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +     I  DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGV--INVDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++   +Q     +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L     VPGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQ-VPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                I+ G R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLSFDDREVIR 483


>gi|254430365|ref|ZP_05044068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
 gi|197624818|gb|EDY37377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
          Length = 500

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 160/503 (31%), Positives = 248/503 (49%), Gaps = 20/503 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +  L++    ++  Q+   P    E  ++ +S DSR +  G +FV + G + DG  +   
Sbjct: 1   MTHLLHPLLRDVGLQV---PEALGEATVHTISCDSRRVGPGTLFVGLPGTQVDGGAYWRS 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LA 119
           A+  GA A VV +A +  D  +T     P++VV+    ++  L A+  +G+  + +  + 
Sbjct: 58  ALKSGACAAVVGTAAAAADPPSTTD---PVVVVEGPVARWAGLLAAAFWGEPSQRLALIG 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++ +   +G  +   G        +A   + TT     L   L+  +
Sbjct: 115 VTGTNGKTTTTHLIEHLAATAGTPAALFGTLENRWPGYAVTAQHTTAFADLLQAQLAQAA 174

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G    ++E SSH LDQ R+ G +     FTNL +DH+DYH + +AYF AK  LF   L
Sbjct: 175 DAGARIGAMEVSSHALDQQRVAGCRFAGAVFTNLTQDHLDYHPSMEAYFAAKASLFAAPL 234

Query: 239 PKESP---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             ES    A++  DD +  ++ ++     C   S+      + +  +    +  +  +  
Sbjct: 235 LLESATPNAVVNGDDPWGAQLARQL-GERCWTSSLEDPSAHLRIDSLEMDSSGVRGRLVT 293

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR- 354
                 F  PL G F + N L A G     G+   ++LE L     VPGR E V    R 
Sbjct: 294 PLGAGHFRSPLLGRFNLMNLLQAVGALAQQGLPLPMLLEGLASFRGVPGRMERVLAGGRE 353

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT + LE  L+  R  T GR+I VFGCGGDRD+GKRP MG IA  LAD  
Sbjct: 354 DQPAVLVDYAHTPDGLENALRASRPFTRGRLICVFGCGGDRDRGKRPQMGAIAARLADRV 413

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DNPR+EDP++I  +++ GIP   E   + +R  AI  AI      D++++AGKGHE
Sbjct: 414 VVTSDNPRTEDPQRILDDVVAGIPAGTELEVEVDRARAIAAAIAGAGPTDLVLIAGKGHE 473

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+    K    D +   + L
Sbjct: 474 DYQILGT-TKIHFDDREEAEKAL 495


>gi|257438093|ref|ZP_05613848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199424|gb|EEU97708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 492

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 142/507 (28%), Positives = 231/507 (45%), Gaps = 37/507 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+      L+           + ++ ++  DSR    G  FV IVG + D H F 
Sbjct: 1   MKLEQLLEGVPFTLV-------QGSLDTEVQDIIYDSRKAAPGLAFVCIVGTQRDSHEFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A+G   +V+     L     +      ++ V+++R  ++L +  L+G     +  +
Sbjct: 54  ADCAAKGVSVLVIQHDIDL-----SAMPGVTVVKVESSRYAMALMSGNLFGNPSRQMTMI 108

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        ++ + + +G     IG          Q+   TTP    L K     
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGKKVGMIGTNGIYFMGCHQETANTTPESYELQKTFRQF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G     +E SS GL   R+ G+    G FTNL  DHI    H+T + Y + K +LF 
Sbjct: 169 LDAGCDVALMEVSSQGLMMDRVAGVHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFR 228

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---IHNKQQVT 292
                    ++  DD  ++ +++      C++++ G   K  +  + C     H+   V 
Sbjct: 229 RC----DVGVVNIDDENTEALLE---GHTCKLVTYGRSEKADYRAEGCELLRTHDFLGVA 281

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             V G+D  D    +PGEF VYNAL A  +   +G+  A + E L K  VV GR E V  
Sbjct: 282 FHVSGRDNMDVRVNMPGEFSVYNALAALAVGKVLGLPDAAIHEGLGK-CVVKGRVELVPI 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + +   I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+    +AD
Sbjct: 341 SKK-FTILLDYAHNEVSTESLLTTLRAYHPHRLVVVFGCGGNRSKLRRYGMGETCAKMAD 399

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +I+T+DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V 
Sbjct: 400 FSILTEDNNRFEKIEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVI 459

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKGHET      G K   ++ +++ E 
Sbjct: 460 GKGHETYRD-REGVKTPFLERELLEEY 485


>gi|291541039|emb|CBL14150.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           XB6B4]
          Length = 516

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 137/516 (26%), Positives = 225/516 (43%), Gaps = 42/516 (8%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+   S   +Q   +  I ++   S  ++ G +FV I G   DGH +I  A+  GA 
Sbjct: 3   LDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAF 62

Query: 70  AIVVSSA----------YSLQDFSATIRS-----NTPILVVDNTRKFLSLFASRLYGKHP 114
           A+VV  +             +     +          ++ V +TR+ L+  ++  Y    
Sbjct: 63  AVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDYPA 122

Query: 115 ENILAVTGTSGKSSV--ASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLA 171
           + +  +  T  K     A     I + +G  +  +G   T +         TTP    L 
Sbjct: 123 KKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSDLQ 182

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNA 229
           + L+ + S G     +E SS G+   R++GI    G F N+  DHI    H +   Y   
Sbjct: 183 RELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGPGEHASFAEYLYC 242

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---------GYQGKFIHLK 280
           K RL  +        I+  DD  +++++   H       SV         G +   +  +
Sbjct: 243 KSRLLRQC----QAGIVNRDDRNTEKIL-FGHTCDIETFSVLGENGVDAPGQKADIVAER 297

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              ++   +  +        +FL  +PG F V NAL A  +     I   +V + L++  
Sbjct: 298 ITFSMKEGRLYSHFFTDGKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDALQR-Q 356

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGR E V  + +     VDYAH   SL  +L  +R    GR++V+FGCGG+R + +R 
Sbjct: 357 TVPGRCENVRISDK-FVFLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGNRSKLRRG 415

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456
            MG+ A  LAD  I+T DNPR EDPE I  +I  GI G    +I   +R  A+  A +  
Sbjct: 416 RMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHA 475

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            + D++V+AGKGHE    +  G +    D +++++ 
Sbjct: 476 REGDIIVLAGKGHEDYQEI-GGVRYPMEDKELVKKA 510


>gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 498

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 142/505 (28%), Positives = 236/505 (46%), Gaps = 23/505 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L Y   P + N          ++ IN +  DSR ++   IF+A+ G K+DGH FI
Sbjct: 1   MKENNLKYFLSPWIKN--------LPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+++   A++   +   Q       +N PI+      K LS  + R Y +      ++
Sbjct: 53  FEALSKKVVAVLSEVSERKQHGKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVI 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TGT+GK++V   + Q  +  G     +G        +      T +     ++  Y  
Sbjct: 113 GITGTNGKTTVTQLINQWSELLGDKIATMGTLGNGFYKSLIPTENTTASAIDIQSFLYSV 172

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  V++E SSHGL Q+R+  I   A  FTNL +DH+DYH+  + Y  AK  LF +  
Sbjct: 173 LNKVKSVTIEVSSHGLVQNRVKNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTDHT 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------GYQGKFIHLKKVCAIHNKQQVT 292
                 I+ A+D Y++  +K+  N     +++       Y  K+++   +     K  V 
Sbjct: 233 VN--KIILNANDKYAQNWLKKFSNKYTIAVTIQDCTQKKYSTKWLNATYIKVYGEKTNVK 290

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        L G F + N L+A    + +    + +++   ++  + GR +   + 
Sbjct: 291 FESSWGHGILSTYLIGTFNIKNLLLALACMLEMNYKLSDLVKKSIQIKPIYGRMQTFNSI 350

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                  +DYAHT ++LE  L  I+      +I  +FGCGG+RD+ KRP+MG+IA  +A+
Sbjct: 351 KTKPICIIDYAHTPDALEKSLNAIKIQYCKKKIWCIFGCGGERDKKKRPLMGEIAEKIAN 410

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             ++T+DNPR ED  KI  EII G       I   NR +AI       N  D++ +AGKG
Sbjct: 411 KVVITNDNPRHEDQNKIIQEIITGCKEKEKIIIIPNRKKAITYVFFQSNIDDIIFIAGKG 470

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   I+ + +     D +I+  +L
Sbjct: 471 HENYQIIGD-QYTSHSDQEIVLNLL 494


>gi|291536619|emb|CBL09731.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           M50/1]
          Length = 516

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 137/516 (26%), Positives = 225/516 (43%), Gaps = 42/516 (8%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+   S   +Q   +  I ++   S  ++ G +FV I G   DGH +I  A+  GA 
Sbjct: 3   LDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAF 62

Query: 70  AIVVSSA----------YSLQDFSATIRS-----NTPILVVDNTRKFLSLFASRLYGKHP 114
           A+VV  +             +     +          ++ V +TR+ L+  ++  Y    
Sbjct: 63  AVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDYPA 122

Query: 115 ENILAVTGTSGKSSV--ASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLA 171
           + +  +  T  K     A     I + +G  +  +G   T +         TTP    L 
Sbjct: 123 KKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSDLQ 182

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNA 229
           + L+ + S G     +E SS G+   R++GI    G F N+  DHI    H +   Y   
Sbjct: 183 RELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGPGEHASFAEYLYC 242

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---------GYQGKFIHLK 280
           K RL  +        I+  DD  +++++   H       SV         G +   +  +
Sbjct: 243 KSRLLRQC----QAGIVNRDDRNTEKIL-FGHTCDIETFSVLGENGVDAPGQKADIVAER 297

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              ++   +  +        +FL  +PG F V NAL A  +     I   +V + L++  
Sbjct: 298 ITFSMKEGRLYSHFFTDGKEEFLLQIPGIFNVSNALAAILVARHFKIAQDVVKDALQR-Q 356

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGR E V  + +     VDYAH   SL  +L  +R    GR++V+FGCGG+R + +R 
Sbjct: 357 TVPGRCENVRISDK-FVFLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGNRSKLRRG 415

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456
            MG+ A  LAD  I+T DNPR EDPE I  +I  GI G    +I   +R  A+  A +  
Sbjct: 416 RMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHA 475

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            + D++V+AGKGHE    +  G +    D +++++ 
Sbjct: 476 REGDIIVLAGKGHEDYQEI-GGVRYPMEDKELVKKA 510


>gi|119773490|ref|YP_926230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
 gi|119765990|gb|ABL98560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
          Length = 487

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 147/496 (29%), Positives = 220/496 (44%), Gaps = 23/496 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F     +    P+            DSR + AG +F+A+ G K DG  ++
Sbjct: 2   MLLKDLLAPWFHYAGTESVHAPV-----------IDSRQLTAGGLFIAVPGYKTDGRAYL 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118
             A A+GA A +V +    +    +      I      R+  S  A + Y   +    ++
Sbjct: 51  DAAFAKGAAAALVHTDDPDEHGKVSYEPGLCIAFFQLNRQV-SAVARQYYALTRGKLRVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV+  + Q+ +  G  +  +G     +    QD   TT   + +   L   
Sbjct: 110 GVTGTNGKTSVSQLIAQLTELLGDKAAVMGTLGNGLWGQLQDVGNTTADAVRVMADLYDF 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R++ +      FTNL RDH+DYH     Y  AK RLF   
Sbjct: 170 EHQGAKVCAMEVSSHGLVQGRVEAVPFEVAVFTNLSRDHLDYHGDMDNYAAAKRRLFA-- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               S  +I  DD   ++              +G+       +     H      +   G
Sbjct: 228 FGSLSARVINLDDKVGEQWFD-GMGCATGFSCLGHAKADWRFENAHFHHAGFSANLVWPG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G F + N L A      +G     ++    KL  VPGR E       G  
Sbjct: 287 GQKPLECRLLGAFNLSNLLAALCAMAQLGYQVPDLVAAAAKLEAVPGRMECFP-RKDGVS 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +++E  LK  R    G + +VFGCGGDRD+GKRP+M + A   AD  ++T 
Sbjct: 346 LVVDYAHTPDAIEQALKAARHHCEGALWIVFGCGGDRDKGKRPLMAEAAEAFADCLVLTS 405

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DN RSEDP  I  ++  G+      +   +R+ AIR A+ M    D++++AGKGHET   
Sbjct: 406 DNARSEDPAVILEDMKAGLDAPERALCMVDRVAAIRHAVSMAKPGDLILLAGKGHETYQE 465

Query: 475 VTNGEKKMSVDCDIIR 490
           +  G K    +  + R
Sbjct: 466 IA-GVKHEYDERALAR 480


>gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 504

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 142/504 (28%), Positives = 219/504 (43%), Gaps = 30/504 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K    +   ++I     + +  I+ +S DSR    G ++ A+ G   DGH F+ QAIA G
Sbjct: 3   KSLSAITGDINIEARNGKTDALISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++     SL             L V N+R  +S  A+  Y        ++ VTGT G
Sbjct: 63  ARAVIHQVPLSL------YHPEIAYLQVTNSRISMSPVAAAFYDHPSRVLKVIGVTGTDG 116

Query: 126 KSSVASFVQQICQRSGLSSFQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           KSS  SF+ Q+    GL       +   +   S     R +TP    + K L  +   G 
Sbjct: 117 KSSTVSFLHQLLTGMGLKCGFLSTVQFNTGGESVKNHFRQSTPEATEIHKTLRAMVEAGC 176

Query: 183 THVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           +H  +E++SHGL    +RL  I   A   TN+  +H+++H T + Y + K  LF      
Sbjct: 177 SHAVIESTSHGLSPKNNRLGDICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQN 236

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVE 296
              A+I  DD         A    CR +S     G Q      + +         T+   
Sbjct: 237 RGIAVINIDDKNHNLFAGTASG--CRSISFYSATGAQKADYRARGIEETPASIAFTLDSP 294

Query: 297 GKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +      + G F V N L A A +C   G++   +      L  V GR   V    + 
Sbjct: 295 KGEARVDLNVAGRFNVDNILAASAAVCELEGVEPKTLEPLFPGLKAVKGRMVPVD-EGQA 353

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ VDYAHT  +   +   IR +  GR+  +F   G+RD  KRP++G IA +  D+ ++
Sbjct: 354 FQVIVDYAHTPGAFRRLFPAIRPLVRGRLFALFSSAGERDLEKRPVLGSIADEYCDVIVL 413

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D++PR E+P  +  E+  G     +        NR EA+R A  M+ K D +++ GKGH
Sbjct: 414 ADEDPRGENPMALLEEVASGCRNKTKGKSLFLIENRKEAMRHAFSMMKKDDCILLLGKGH 473

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I  NG   +  D + +  IL
Sbjct: 474 EGSIIYANG--PVPWDEEEMARIL 495


>gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
 gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
          Length = 479

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 140/490 (28%), Positives = 241/490 (49%), Gaps = 23/490 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  +++  L I  +     +I  +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KNINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  SLVLTD--------SHQFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY       ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKK--YQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +      A    +S+  +   +++K       K +  +   G+   ++   
Sbjct: 230 NIDDEYGQRLCNMTQ-APVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL-DNDIKIVIDYAHT 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  
Sbjct: 346 PDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESI 405

Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I  +I  G       I   +R +AIR +IE  N+ D++++AGKGHE   +  NG K+ 
Sbjct: 406 ENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHECY-LDKNGAKEY 464

Query: 483 SVDCDIIREI 492
             + +II+ +
Sbjct: 465 FDEREIIKNM 474


>gi|311895543|dbj|BAJ27951.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Kitasatospora setae
           KM-6054]
          Length = 514

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 154/499 (30%), Positives = 232/499 (46%), Gaps = 22/499 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E    L +  ++  E  +  V+ DSR ++ G ++VA  G    G  F   A A GA A
Sbjct: 22  LAEAARLLGLAGVEGPE--VTGVTHDSRAVRPGDVYVAFPGANHHGAAFAAGAAAAGAVA 79

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSS 128
           ++  +A +         +  P+LVVD+ R+ +   A+ +YG   E +L +  TGT+GK++
Sbjct: 80  VLTDAAGAE----LAAAAGVPLLVVDSPREAMGPLAAAVYGAPSERMLMIGLTGTNGKTT 135

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  V+   + +G     IG     +      +  TTP    L   L+ +   G   V +
Sbjct: 136 TSYLVEGGLRGAGRLPGVIGTVEMRVGEERIKSERTTPEATELHAVLAVMREAGADAVVM 195

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R DG+      F NL  +H+D+H   + Y+ AK RLF++   +   A   
Sbjct: 196 EVSSHALVYGRTDGVVYDVALFNNLTPEHLDFHPDMEDYYRAKARLFQQGKSRRGVA--N 253

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306
            DD+Y + +   A        + G          V    +      +   G+  D   PL
Sbjct: 254 RDDSYGRRLAGEARIPMTTFSAAGDPAADWRAVDVRPGPSGSTFRVLGPNGEQADAAVPL 313

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V NAL A    +  G++ A  +  +  +  VPGR E V    +     VDYAH  
Sbjct: 314 PGLFNVSNALGAITALVVAGVELADAVAGVAAVPGVPGRLEEVDA-GQDYVAVVDYAHKP 372

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L  +L ++R +T GR+ VV GCGGDRD  KR  MG IA  LAD A++T DNPRSED  
Sbjct: 373 DALSSVLASLREVTKGRLHVVVGCGGDRDPYKRGPMGAIAARLADTAVLTSDNPRSEDAL 432

Query: 427 KIRAEIIHGIPGFIE--------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            I A ++ G     E          +R EAI  A+   +  D ++VAGKGHE    V  G
Sbjct: 433 AILATMLSGAAEVPEQERGEVLAVPDRGEAIALAVSRAHSGDTVLVAGKGHELGQYVK-G 491

Query: 479 EKKMSVDCDIIREILGLIL 497
           E +   D  ++R  +  I+
Sbjct: 492 EVRPFDDRQVLRTAIEQIM 510


>gi|317489850|ref|ZP_07948344.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
 gi|316911048|gb|EFV32663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
          Length = 500

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 170/495 (34%), Positives = 257/495 (51%), Gaps = 18/495 (3%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL   +    +   + ++N ++  S  +Q G  F  +VG   DGH F   AI +GA
Sbjct: 3   KTCTELFAGIDCTILGNADDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + +VV     L D      ++   +VV +TRK ++  A+  Y    +++  + +TGT+GK
Sbjct: 63  KVLVVERKVYLAD-----ATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    V+ I + +G  +  IG     I   A+ +  TTP    L + L+ +       V
Sbjct: 118 TTTTYLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLLARMRDARCDVV 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH LD  R         +F+NL +DH+DYH T +AYF AK RLF +  P  +  +
Sbjct: 178 AMEVSSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYP--AKRV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I  DD + KE+++R   A   V++ G+      H   V        VT+ V G    F +
Sbjct: 236 ICIDDKWGKELLRRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDY 295

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYA 363
           PL G+F V N + A G+ + +G  +  ++E LE+   +PGR E V   + GG  ++VDYA
Sbjct: 296 PLVGKFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYA 355

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L +I  +T GR + VFGCGGDRD  KRPIMGK AL  AD A+VT DNPR+E
Sbjct: 356 HTPDALEKALASIMALTPGRTVCVFGCGGDRDASKRPIMGKAALA-ADHAVVTSDNPRTE 414

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  +I+ G+      F  + +R  AI  AI      D +++AGKGHE   +V +  
Sbjct: 415 DPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLVGDQV 474

Query: 480 KKMSVDCDIIREILG 494
                D  +  E L 
Sbjct: 475 LS-FDDRIVAAEELA 488


>gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
 gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
          Length = 501

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 150/496 (30%), Positives = 236/496 (47%), Gaps = 22/496 (4%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++N  +      R R   ++ +DSR ++AG  FVA  G   DG  ++ +A+ QGA A++
Sbjct: 6   QILNNAAEAVAWLRSRVQGDLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAALL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
           V +        A   S   I  +   +    L A + +       ++LAVTGT+GK++ A
Sbjct: 66  VEADG----LQAFDLSGDSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTA 121

Query: 131 SFVQQICQR----SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            ++     +    +      +G     +    +   +TTP P+ L +A    + QG+   
Sbjct: 122 WWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLAAC 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++EASS G+ +HRLDG K+    FTN  +DH+DYH +  AY+ AK +LF+   P    A+
Sbjct: 182 AIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFD--WPGLPAAV 239

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  DDA+   +  R       V SV  QG      K +         T+   G       
Sbjct: 240 VNIDDAHGARLWARLQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNT 299

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G++ V N L        +G+     ++    L  VPGR + +    +   + VDYAH
Sbjct: 300 RLVGQYNVSNLLGVLATLRCLGLTLEQAVQACADLEPVPGRMQQIVKPGQ-PLVAVDYAH 358

Query: 365 TSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           T ++LE  L+ ++       G++  VFGCGGDRD  KRP+MG+ A   AD   VT DNPR
Sbjct: 359 TPDALEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPR 418

Query: 422 SEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           SE PE I  +I+ G+        + +R  AI  AI   + +DV+++AGKGHE     T G
Sbjct: 419 SEVPESIIDQILAGMQAGQALHVQADRAAAIAQAIARADARDVVLIAGKGHEDYQE-TKG 477

Query: 479 EKKMSVDCDIIREILG 494
            +    D    ++ L 
Sbjct: 478 VRHPFSDMAEAQKALA 493


>gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
 gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
          Length = 556

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 152/519 (29%), Positives = 236/519 (45%), Gaps = 60/519 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +N +S DSR I  G +FVA+ G    G +FIP AI +GA AI+  SA +  D     R
Sbjct: 33  IPVNHLSIDSRAISKGDVFVALQGVSVHGEVFIPAAIKKGAVAIL--SATTASDVFVEYR 90

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ + +  ++LS  A   Y    + +  + +TGT+GK+S A    Q+   +G +  
Sbjct: 91  DEIPVIFIPHLEQYLSEIAGNFYHHPTKKVPVIGITGTNGKTSCAQIYAQLSAFNGSAVG 150

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ------------------------- 180
            IG     +     +   +    +  K     SSQ                         
Sbjct: 151 VIGTMGYGACRPHVSHKNSQDKDFQDKGFQDKSSQNSHASQSRAGQPGYSLSLVSTGMTT 210

Query: 181 -----------------------GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                                  G+  V +E SSHGL+Q R+  + + +  FTNL  DH+
Sbjct: 211 PDAIAAQFICDELLHSNNASNTLGLESVVMEVSSHGLEQGRVSALDINSAIFTNLTHDHL 270

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKF 276
           DYH    AY NAK +LFE  +P  + AI+  DD +S E+  K A        S+      
Sbjct: 271 DYHGDMVAYGNAKAKLFE--MPTINLAIVNLDDEFSHELTTKIASTVRVISYSIDNANAD 328

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           ++L  +   H++    +    + +    PL G F + N L    +      + + V+   
Sbjct: 329 LYLDNIRYGHSQLLADLYCNNEIYALSTPLIGRFNLSNLLAVLSVFSQQ-QNFSQVVASA 387

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           + L  + GR E V  N  G ++ VD+AHT ++L+ +L+ +     G +  VFGCGGDRDQ
Sbjct: 388 QYLQPISGRMESV-ENQEGIQVVVDFAHTPDALDNVLQAVSEYVDGEVYCVFGCGGDRDQ 446

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIE 454
            KRP+M  +A   AD  +VT+DNPRSE+P  I  +++ G           R EAIR AI 
Sbjct: 447 SKRPLMAAVAERYADHVVVTNDNPRSENPTDIAQQVVQGFSSNNHCVIEEREEAIRFAIH 506

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                D++V+AGKGHE+  ++ + +K    D  +    L
Sbjct: 507 HAKIGDMVVIAGKGHESYQLIGD-QKIPFSDRQVALSAL 544


>gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
 gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
          Length = 479

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 143/479 (29%), Positives = 232/479 (48%), Gaps = 20/479 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSA 84
            +  +  +S DSR ++ G  F A+ G++E G  +  +A+ +GA  +V  S+ + ++    
Sbjct: 2   PDIPVYGLSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGALIVVYDSSGAGVRAPEP 61

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
            +    P   V +  + L   A+R +G   E  +++AVTGT+GK+S   F+ +  Q    
Sbjct: 62  GLGFAVP---VRDLGRHLGSIAARFFGHPSETLDVIAVTGTNGKTSCTHFIAEALQPDHP 118

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++        +    +    TTP  I +   L+ L +QG    ++EASSHG  Q R++G+
Sbjct: 119 TAVIGTLGWGLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQAQGRINGV 178

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 +T + RDH++YH T ++Y  AK+ L     P      +  DD     ++ R+  
Sbjct: 179 HCRGALYTRITRDHLNYHGTFESYLAAKLGLLAN--PALEFVAVTLDDPSVDAIL-RSVP 235

Query: 263 AGCRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           AG +V+     G          ++ +        + +   G+  +   P+ G+F   N L
Sbjct: 236 AGVKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYGDFNAENLL 295

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               + + +G  +      + ++  VPGR E       G  + VDYAHT ++L  +L ++
Sbjct: 296 GTLAVLVGLGYPAEAAASRVGRVRPVPGRMERF--RENGLTVIVDYAHTPDALRNVLTSL 353

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R     R+ VVFGCGGDRD+GKRP MG IA  +AD  IVTDDNPRSE  + I  +I+ G 
Sbjct: 354 RRHCRERLWVVFGCGGDRDRGKRPEMGAIAARIADHVIVTDDNPRSEPGDAIVQDILAGC 413

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                    +R  AIR AI      D+++VAGKGHE    V  G      D + +R+ L
Sbjct: 414 GETAVTVVRDRRTAIRAAIAQAGDGDIVLVAGKGHEAFQEVA-GVFYEFSDREEVRKAL 471


>gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
 gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
          Length = 501

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 141/487 (28%), Positives = 224/487 (45%), Gaps = 28/487 (5%)

Query: 19  SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-A 76
           S   +QW   ++   + +DSR +  G  F+A  G   DG   +  A+ +GA A +V    
Sbjct: 8   SHDAVQWLRERVTGTLQTDSRLVAPGDGFIAWPGAATDGRAHVADAMVRGATACLVEQTG 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
                F+    +  P L     +      A++ +G   +++  LAVTGT+GK+S A ++ 
Sbjct: 68  VEAFGFTGEHMAALPGL-----KAATGPMAAQWFGHPAQHLAVLAVTGTNGKTSTAWWLA 122

Query: 135 QICQ-------RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                       +      +G     +    +   +TTP P+ L +A    + QG+   +
Sbjct: 123 GALNSLSKQELHAPTRCALVGTLGMGVPPALESTGMTTPDPVRLQRAFRQYADQGLGACA 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASS GL + RLDG  +    FTN  +DH+DYH +   Y+ AK  LF+   P    A+I
Sbjct: 183 IEASSIGLAESRLDGTPIRVAIFTNFTQDHLDYHGSMADYWLAKRALFD--WPGLQAAVI 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD    ++          + S+   G      + +       + T+    +       
Sbjct: 241 NVDDPAGAQLHAELTGGALDLWSISAHGAARLAAQDIALGPQGLRFTVVEGAQRVPLQTR 300

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G + V N L       + G+  A  +     L  VPGR + +    +   + VDYAHT
Sbjct: 301 VIGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRLVAPGQ-PLVAVDYAHT 359

Query: 366 SNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++L+  L+ +R +     G++  VFGCGGDRD GKRP+MG +A   AD  +VT DNPRS
Sbjct: 360 PDALDKALQALRPLAVERGGQLWCVFGCGGDRDAGKRPLMGAVAQQHADWVVVTSDNPRS 419

Query: 423 EDPEKIRAEIIHG-IPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E+P  I  +I+ G I G     + +R  AI  AI   +  DV+++AGKGHE     T G 
Sbjct: 420 EEPAAILHQILQGTIAGETVRAEPDRAAAIALAIGEADAADVVLIAGKGHEDYQE-TAGV 478

Query: 480 KKMSVDC 486
           ++   D 
Sbjct: 479 RRPFDDM 485


>gi|187925447|ref|YP_001897089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phytofirmans PsJN]
 gi|187716641|gb|ACD17865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia
           phytofirmans PsJN]
          Length = 515

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 153/477 (32%), Positives = 221/477 (46%), Gaps = 30/477 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A   +  D   FI  AI +GA A++V      + FS  I  +  
Sbjct: 30  HLHADTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQP----EGFSGAIDPSNT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  Y    +++L   VTGT+GK+S + ++       G     IG 
Sbjct: 86  -LAVPALNELAGSIASGWYNDPSDSMLTLGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGSGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T +AY  AK RLF    P    A+I  DDA  + ++        R +
Sbjct: 205 FTNLTQDHLDYHHTFEAYEAAKARLFA--WPDLRAAVINRDDAAGRRLLASTQG-HARTI 261

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGEFQVYNALVA 318
           + G         K  A+     V  +  G  F                 G F V N L  
Sbjct: 262 AYGLDDTLQDAPKADALLLASNVRATATGTAFHLSTSDWGNAEVEVQTLGAFNVSNLLGV 321

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNI 376
            G  +A  +     +  L KL  V GR + +G    +    + +DYAHT ++LE  L+ +
Sbjct: 322 LGALLAADVPFNAAVAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLEAL 381

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R +     G +I +FGCGGDRD  KRP+MG IA  +AD  +VT DNPRSEDP+ I  +I 
Sbjct: 382 RPMATARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQAIIEQIA 441

Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 AGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 497


>gi|148651952|ref|YP_001279045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Psychrobacter sp.
           PRwf-1]
 gi|148571036|gb|ABQ93095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. PRwf-1]
          Length = 569

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 154/525 (29%), Positives = 247/525 (47%), Gaps = 62/525 (11%)

Query: 27  ERKINEVSSDSRHIQAGWI------FVAIVGNKE---DGHLFIPQAIAQGAEAIVVSSAY 77
           +   ++   DSR +           FV +    +       ++  A+ Q   A ++S   
Sbjct: 38  DVPFSKFVLDSRQLAKRDASSAPAAFVLLKSQTQPLQKSQQYVQTALPQ--AAFIISEID 95

Query: 78  SLQ------DFSATIRSNTPILVVDNTRKFLSLF----------------ASRLYGKHPE 115
             Q      D  +    + PIL V + R  L                   A  L    P+
Sbjct: 96  PQQLGLEGLDKPSDSSPDCPILFVPDIRDVLGTLIQLSLLSDDALSQIGDAQSLAQTLPQ 155

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDN----RLTTPSPIYL 170
            ++AVTGT+GK++++  + Q+CQ S ++         T  +   D+      TT   + +
Sbjct: 156 -VIAVTGTNGKTTISQLMAQLCQFSEVAQLQNSAVMGTAGNGRLDSLVQASHTTGDALAV 214

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L  +  +GV  +++EASSHGLDQ RL G+ +    +TNL RDH+DYH   Q Y  AK
Sbjct: 215 QGFLRKMGDEGVDLLALEASSHGLDQQRLQGVPVTVALYTNLSRDHLDYHPDMQDYAQAK 274

Query: 231 MRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----------- 278
            RLF+    P+ + A+I ADD ++  +++ A N+G  V     QG FI            
Sbjct: 275 ARLFDKAYFPQLTHAVINADDEFAPLMIETAQNSGVSVWLYSLQGDFIEKSDLQRNAYFI 334

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            K +    +  ++  +          PL G F V N L A    IA+GI+   +   +++
Sbjct: 335 AKTIEPSLDGVKIEAATSFGPLTLHSPLLGRFNVANLLAAVAGAIALGIEPESIPALVKQ 394

Query: 339 LHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           LH   GR + V  + +G     G   VDYAHT ++L  +L ++++  SG +  +FGCGGD
Sbjct: 395 LHGASGRMQRVSLDEQGSQPEQGVFIVDYAHTPDALTQVLTSLKSHCSGNLWAIFGCGGD 454

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEA 448
           RD+GKRP+M +  L  AD  ++T DNPRSEDP+ I  ++  G+            +R +A
Sbjct: 455 RDKGKRPLMAQAGLATADKVVLTSDNPRSEDPQMILQDMQQGMSDEQHAKTTVIADRKQA 514

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I  A+E     D++V+AGKGHET   +  G +    D  ++++ L
Sbjct: 515 IEYAVEHAAADDIVVIAGKGHETYQEIK-GVRYDFDDRLVLQQAL 558


>gi|261368781|ref|ZP_05981664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282569127|gb|EFB74662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 486

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 150/503 (29%), Positives = 216/503 (42%), Gaps = 34/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+            I      + +I  ++ DSR    G +FV +VG   DGH F 
Sbjct: 1   MKLNELVR----------HIDHTGASDAEITAITYDSRKAGPGALFVCLVGAWMDGHTFA 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A  QG  A +V     L        ++   +V  +TR  L++  +  YG   E +  +
Sbjct: 51  RSAYDQGCRAFLVEHTLDL-------PADVAQIVTQDTRAALAVIGADFYGNPAEQLHII 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++ A     I   +GLS   IG     I+   +    TTP  + L +    +
Sbjct: 104 GITGTKGKTTTALLTSAILTEAGLSCAYIGSNGVNIAGTHEATANTTPESLELHRLFRKM 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
               V HV +E SS  L  HR+DGI     +FTNL  DHI    H   + Y  AK RLF 
Sbjct: 164 LDANVHHVVLEVSSQALRHHRVDGIPFEVVAFTNLSEDHIGPGEHPDFEDYKAAKRRLFA 223

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---IHNKQQVT 292
           E     +  ++Y  D    + M+           +G+   +  +               T
Sbjct: 224 E---YNARVMVYNADDAVSDYMRAGFAGQQVSFGIGHDADYRAVDLAQYRSETALGIDFT 280

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               G+        PG F   +AL A  LC A G+      + L     V GRFE V   
Sbjct: 281 CEHGGEATPVRVMSPGAFSASDALCAIALCGAFGVTPDQAAKTLAH-TPVEGRFE-VVEG 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G    VDY+H   +L   LK +R     R+I VFG  G R Q +R  + + A   AD 
Sbjct: 339 LPGRTFIVDYSHNGLALTSALKTLRAYQPRRLICVFGSVGGRTQVRRRELAEAASAWADY 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +I+T DNP  EDP  I  +I   +     +    +R EAIR A+ M    D+++ AGKGH
Sbjct: 399 SILTSDNPDFEDPMNILRDIDACMAPDALYALIPDRAEAIRQAVAMAEPGDIVLFAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           E   ++  G+K   V+ D+IRE 
Sbjct: 459 EDYQLI-QGKKVPFVERDLIREA 480


>gi|323527435|ref|YP_004229588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
 gi|323384437|gb|ADX56528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
          Length = 519

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 221/481 (45%), Gaps = 34/481 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A      D   FI  A+ +GA A++V          A+      
Sbjct: 30  HLHADTRSLAAGDAFFAYAVEGADNRPFIDGALERGAAAVLVQPEGFGGAIDAS-----T 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V    +     AS  YG   +++L V  TGT+GK+S + ++       G     IG 
Sbjct: 85  MLAVPALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGLPGQLVHTGFTTPDAPQLQRSLAQLRHAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T +AY  AK RLF    P+   A+I  DDA  + ++  +     R +
Sbjct: 205 FTNLTQDHLDYHHTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRLLA-STRGHARTI 261

Query: 269 SVGYQGKFIH-------------LKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYN 314
           + G                       V A        +S  +  D D      G F V N
Sbjct: 262 AYGLDSASKGTPDSTPQADALLLASNVRATATGTAFHLSTSDWGDADVEVQTLGAFNVSN 321

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMI 372
            L   G  +A  +     L  L +L  V GR + +G    +    + +DYAHT ++LE  
Sbjct: 322 LLGVLGALLAADVPFDAALAELARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKT 381

Query: 373 LKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L+ +R +     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I 
Sbjct: 382 LEALRPMAAARGGELVCMFGCGGDRDATKRPLMGAIAEKLADGVVVTSDNPRSEDPQSII 441

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D 
Sbjct: 442 EQIAAGMKDASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSDQ 500

Query: 487 D 487
           D
Sbjct: 501 D 501


>gi|210617216|ref|ZP_03291460.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
 gi|210149417|gb|EEA80426.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
          Length = 493

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 151/508 (29%), Positives = 239/508 (47%), Gaps = 41/508 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+ +        L    +Q  +  +I E+++DSR + AG +FV I G   DGH F
Sbjct: 2   MKLTKLLER--------LEYKVVQGNDDIEITELTNDSRRVCAGSVFVCISGAVVDGHEF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           + + + +GA+A++V               +  ++ V++TR  L+L ++  +G   E   +
Sbjct: 54  VKEVLEKGAKAVIVEKEVKA-------PEHVTVIKVEDTRYALALASAAYFGYPAEQLKV 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT GK++    V+ I +  G     IG   + I       + TTP    + +    
Sbjct: 107 IGITGTKGKTTTTYMVKSILEGVGHKVGLIGTIEAIIGDEVIPAKNTTPESFTIHQYFRK 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +   G   V +E SS GL  HR  GI    G FTNLG DHI    H+  + Y   K  LF
Sbjct: 167 MVDAGCDAVVMEVSSQGLMLHRTAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLF 226

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTI 293
           ++        I   DD Y ++V  R             +                  V+ 
Sbjct: 227 KQC----RIGIANVDDPYFEDVF-RGATCQIETFGFAQKADLRAADTKLVSRPGYLGVSY 281

Query: 294 SVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V G  DFD    +PG F VYN+L A  +C    +   ++ +   K+  V GR E V   
Sbjct: 282 HVSGLMDFDVEIDIPGTFSVYNSLTAIAVCRHFDVPVEMIKKA-LKVAKVKGRIEMVKV- 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           S    + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+
Sbjct: 340 SEDFTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRAKARRYEMGEVSGKLADL 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I+T DNPR E+P+ I  +I  GI      ++E  +R EAIR A++     DV+V+AGKG
Sbjct: 400 TIITSDNPRFEEPQDIIDDIKIGIGKTDGKYVEICDRKEAIRYAVDHAEVGDVIVLAGKG 459

Query: 469 HETVHIVTNGEKKMSVD-----CDIIRE 491
           HE    +     K  +D      ++++E
Sbjct: 460 HEDYQEIKG--VKYDMDERVLIAEVVKE 485


>gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 555

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 152/523 (29%), Positives = 243/523 (46%), Gaps = 39/523 (7%)

Query: 3   LQDLIYKDFPELINQLSI-FPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           L  L+  D   L   L    P +  +R++    ++ DSR +  G ++ A+ G +  G  F
Sbjct: 14  LAALLGPDASLLRPDLGADRPPEVPDREVHVRGITHDSRQVGPGDLYAALPGTRAHGADF 73

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118
             QA   GA A++     + +       +  P++VV + R  L   AS ++    +++L 
Sbjct: 74  AGQAAEAGAAAVLTDGDGAER----AAATGLPVIVVPDVRAVLGTAASWVFKDPAQDLLL 129

Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
              TGTSGK++V   V+   + +G+ +  +G     +      + LTTP    L    + 
Sbjct: 130 IGTTGTSGKTTVTYLVESGLRHAGMRTGLVGTVEMRVGDERVVSSLTTPEATDLHGLFAL 189

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV+  ++E SSH L   R+ G +     FTNL +DH+D+H   + YF+AK RLF  
Sbjct: 190 MRERGVSAAAMEVSSHALALSRVGGTRYDVAVFTNLSQDHLDFHSDLRDYFDAKARLFTP 249

Query: 237 LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQG-----------KFIHLKKVCA 284
                  A++ ADD + + ++     +    V +    G                  V  
Sbjct: 250 --EYCDIAVVNADDRFGRALVDMVQADGRVPVTTFAVDGYTDADPATAMEADWRAVDVRL 307

Query: 285 IHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   I   G  + +    LPG F V NA+ A    +  G+     +  +     VP
Sbjct: 308 GAMGSAFRIVGPGGMEANASVALPGPFNVSNAMAAIVGLVEAGLPLETAIAGVAAAPGVP 367

Query: 344 GRFEFVGTNS-----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           GR E V  N+     +     VDY+H   ++E +L  +R  T G + +V GCGGDRD+ K
Sbjct: 368 GRMEPVVANAVPHAFQDFTALVDYSHKPGAIEAVLTALRATTEGGLTMVVGCGGDRDRAK 427

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--------NRIEAIR 450
           RP+MG+ A  L+D  ++T+DNPR+EDP  I A ++ G+    E+         +R EAIR
Sbjct: 428 RPLMGEAAARLSDQLVITNDNPRTEDPVSIAASMLEGVAKVPEEHRARVTVEFDRAEAIR 487

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            A+E     DV+VVAGKGHET   V  GE     D +++R  +
Sbjct: 488 LAVERARPGDVVVVAGKGHETGQYVK-GEVLPFDDREVLRAAI 529


>gi|254994779|ref|ZP_05276969.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. Mississippi]
          Length = 472

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 160/473 (33%), Positives = 248/473 (52%), Gaps = 25/473 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++DSR ++ G+IFV +      G  F+P A+  GA+ IV  +A  L         ++
Sbjct: 15  SGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHV-----DHS 66

Query: 91  PILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I++           AS   +G  PE +  VTGT+GK+SVA F +QI   +G +   +G 
Sbjct: 67  QIIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126

Query: 150 TSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              I   ++       TTP  + L K LS L    V ++ +EASSHG+ Q RL G+K   
Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL  DH+DYH + + Y+  K +LF E+L  E  A++ AD     E+ + A      
Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELAAGRN-- 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++ G     + L ++        +T+ + G+  +D  FP+ G+FQ+ N L A  +  A 
Sbjct: 245 IITYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAVVAAS 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
           G  S      +++L    GR E +     G RI +DYAHTS++L+  L +++      + 
Sbjct: 305 G--SGHRDVPIDRLAPPRGRMELI-----GDRIIIDYAHTSDALKHALTSLKWHGFPQKT 357

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           ++VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPRSE+PE IR EI+      IE  +
Sbjct: 358 VLVFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPD 417

Query: 445 RIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R +AI  A+    + + VL++AGKGHET   +     +   D   +R  L  +
Sbjct: 418 RGDAIHYAVNFAIRNNYVLLIAGKGHETTQQIAGKSVE-FNDGTAVRRCLSEM 469


>gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida
           GA99-3549]
          Length = 479

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 140/490 (28%), Positives = 241/490 (49%), Gaps = 23/490 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I+ +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  SLVLTD--------SHQFEDQKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY       ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYYKK--YQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +          V S+  +   +++K       K +  +   G+   ++   
Sbjct: 230 NIDDEYGQRLCNMTQAPIITV-SLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL-DNDIKIVIDYAHT 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  
Sbjct: 346 PDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESI 405

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I ++I  G       I   +R +AIR +IE  N+ D++++AGKGHE   +  NG K+ 
Sbjct: 406 ENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHECY-LDKNGAKEY 464

Query: 483 SVDCDIIREI 492
             + +II+ +
Sbjct: 465 FDEREIIKNM 474


>gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 537

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 146/502 (29%), Positives = 233/502 (46%), Gaps = 25/502 (4%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL +QL +   +  E   +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA 
Sbjct: 17  LAELADQLGVDAPEASEGAAVTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAV 76

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127
           A++   A + +       +  P+L VDN R  +   A+ +YG+   ++L   +TGTSGK+
Sbjct: 77  AVLTDPAGAER----AAATGLPVLAVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKT 132

Query: 128 SVASFVQQICQRS----GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + A  ++   + +    G  +  IG   T I      +  TTP    L    + +  + V
Sbjct: 133 TTAYLIEGGLKAAAKHDGGLTGLIGTVETRIGDERIKSERTTPEATDLQALFAVMRERDV 192

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF +   +  
Sbjct: 193 HSVVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRAG 252

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFD 301
              I  DD Y + +++++        + G+         V         T +   G+   
Sbjct: 253 V--INYDDEYGRRLIEQSEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAVGPNGESVR 310

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PLPG F V NAL A       GID     + +  +  VPGR E V    +     VD
Sbjct: 311 AAAPLPGPFNVANALAAVVALAVAGIDPQTAADGIAAVPGVPGRLERVDV-GQPYLAVVD 369

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH ++++E +L+ +R +T G++  V GCGGDRD+ KR  MG      +D A++T DNPR
Sbjct: 370 YAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGAAVARYSDTAVLTSDNPR 429

Query: 422 SEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           SEDP  I A ++ G            + + +R  AI  A+      D ++VAGKGHE   
Sbjct: 430 SEDPLAILAAMLAGAAEVPAHERGDVLVEEDRANAIAAAVARAEPGDTVIVAGKGHELGQ 489

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
            +  G  +   D  ++RE + L
Sbjct: 490 DIA-GVIRAFDDRQVLREAIEL 510


>gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
          Length = 522

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 142/495 (28%), Positives = 230/495 (46%), Gaps = 22/495 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL ++L +      +  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 17  LGELADRLGVETAGSGD--VTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAVA 74

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++     + +       +  P+LV +N R  +   A+ +YG+    +L   +TGTSGK++
Sbjct: 75  VLTDPTGAER----AAATGLPVLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTT 130

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G  +  IG     I      +  TTP    L    + +  +GV  V++
Sbjct: 131 TAYLVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 190

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF           + 
Sbjct: 191 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGV--VN 248

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306
            DD Y + ++  +        + G+     H + V         T +  +G+      PL
Sbjct: 249 FDDEYGRRLITESGVPVTTFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 308

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       G+   +  + +  +  VPGR E V    +     VDYAH +
Sbjct: 309 PGPFNVANTLAAIVTLAVAGVAPQIAADGVAAVPGVPGRLERVDA-GQPYLAVVDYAHKT 367

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+++R +T G++ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 368 DAVESVLRSLRKVTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPL 427

Query: 427 KIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            I A ++ G       E+G+         AI  A+      D ++VAGKGHE    V +G
Sbjct: 428 AILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHEQGQDV-HG 486

Query: 479 EKKMSVDCDIIREIL 493
             +   D  ++   +
Sbjct: 487 VVRAFDDRKVLHAAI 501


>gi|115314388|ref|YP_763111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|115129287|gb|ABI82474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
          Length = 492

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 140/492 (28%), Positives = 242/492 (49%), Gaps = 23/492 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 7   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 67  SLVLTD--------SHEFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY   +   ++ 
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISY--YKNYQNLV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +           +S+  +   +++K       K +  +   G+   ++   
Sbjct: 235 NIDDEYGQRLCNMTQ-VPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 294 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL-DNDIKIVIDYAHT 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  
Sbjct: 351 PDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESI 410

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE   +  NG K+ 
Sbjct: 411 ENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECY-LDKNGAKEY 469

Query: 483 SVDCDIIREILG 494
             + +II++  G
Sbjct: 470 FDEREIIKKYAG 481


>gi|89255900|ref|YP_513262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156501883|ref|YP_001427948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009665|ref|ZP_02274596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FSC200]
 gi|254368738|ref|ZP_04984751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953388|ref|ZP_06558009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|295313392|ref|ZP_06804000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|89143731|emb|CAJ78930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156252486|gb|ABU60992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157121659|gb|EDO65829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 487

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 140/492 (28%), Positives = 242/492 (49%), Gaps = 23/492 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  SLVLTD--------SHEFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISY--YKNYQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +           +S+  +   +++K       K +  +   G+   ++   
Sbjct: 230 NIDDEYGQRLCNMTQ-VPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL-DNDIKIVIDYAHT 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  
Sbjct: 346 PDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESI 405

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE   +  NG K+ 
Sbjct: 406 ENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECY-LDKNGAKEY 464

Query: 483 SVDCDIIREILG 494
             + +II++  G
Sbjct: 465 FDEREIIKKYAG 476


>gi|169629088|ref|YP_001702737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium abscessus ATCC 19977]
 gi|169241055|emb|CAM62083.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Mycobacterium
           abscessus]
          Length = 515

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 158/499 (31%), Positives = 242/499 (48%), Gaps = 20/499 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +  D   L++     P       +  V+  ++  + G +F A+ G    G  F  +A++ 
Sbjct: 17  LVSDLASLVSAELHGPSA---TTVGGVTLRAQDARTGDLFAALPGTSTHGAQFASEAVSA 73

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A++  +A +  +  A    +  +LV    R  L   A+ +YG+      ++ VTGTS
Sbjct: 74  GAAAVLTDAAGA--ELVAGQGLDIAVLVHPVPRSVLGELAATVYGEPSRHLQVVGVTGTS 131

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G     IG     I      + LTTP    L + L+ +  +GV 
Sbjct: 132 GKTTTTYLVEAGLRAAGKRVGLIGTVGVRIDGEDVPSALTTPEAPALQELLAEMVQRGVD 191

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L  +R+DG +   G+FTNL RDH+D+H   Q YF  K RLF    P+ + 
Sbjct: 192 TVVMEVSSHALALNRVDGTRFAVGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAH 251

Query: 244 -AIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +++  DD   + + + A  AG  V +V    G    +            Q+   +   +
Sbjct: 252 RSVVCIDDDAGRAMAELAREAGPDVTTVSSLDGGVADWRCSNVAVGHDGGQRFVANGPDR 311

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D +    LPG + V N LVA  +   +G+ +A     +     VPGR E V    +    
Sbjct: 312 DTELTIALPGHYNVANCLVAIAILDVLGVSAATAAPGIAT-AGVPGRMEAVAA-GQPFLA 369

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH   +L  +L+++R+   GR+ VVFG GG+RD+GKR  MGK+A +LAD+ +VTDD
Sbjct: 370 VVDYAHKPGALRAVLESLRSHRDGRLAVVFGAGGNRDRGKRADMGKVAAELADLVVVTDD 429

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           NPR+E+P  IR EII G  G     IE G+R  AI  A       D ++VAGKGHE+   
Sbjct: 430 NPRNEEPAAIRTEIISGTTGSEAQIIEIGDRRAAIDFATLWARPGDTVLVAGKGHESGQK 489

Query: 475 VTNGEKKMSVDCDIIREIL 493
             +       D   +R  L
Sbjct: 490 TGDVTVP-FDDRVELRAAL 507


>gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
 gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
          Length = 496

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 218/470 (46%), Gaps = 23/470 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ ++++++DSR  + G IFVA  G   D H F    I QG   +VV+    L       
Sbjct: 20  DKNVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCSIVVVNRELELD------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
                 +VV +T +  SL A  L+      +     TGT+GK+S+A+ +  I ++   +S
Sbjct: 74  -GEVTQVVVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKAL--SYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +G     I+        TTP  + L K +  +  +      +++E SSHGL   RL G
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDADAEAEAMTMEVSSHGLSLGRLRG 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMK 258
           ++     F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +S  +  
Sbjct: 193 VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSHYL-- 250

Query: 259 RAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            A      V + G   +   + K +       +   S    D+    P  G F + N + 
Sbjct: 251 -ASVTPYEVFTYGIDNEAQFMAKNIDESLQGVEFDFSTPFGDYRVKSPYVGRFNISNIMA 309

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A     + G     ++  +  L  V GR E V   S    + +DYAHT++ +  ++  ++
Sbjct: 310 AIIAVWSKGASMEEIINAVTSLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVK 368

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G  
Sbjct: 369 PFVKQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGAT 427

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              ++E  +R E I+ AI++    D +V+A KG E   I+    K    D
Sbjct: 428 HDNYVEFDDRAEGIKHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD 477


>gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 948

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 166/481 (34%), Positives = 243/481 (50%), Gaps = 10/481 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N L     +++  +   +S +S   +  +IF AI G K DG  FI  AI +GA  I+   
Sbjct: 5   NFLKNIKKEFKNHQFGGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIISEQ 64

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            +        I++    L   N RK LS  + +     P+N++AVTGT+GKSS+A F  Q
Sbjct: 65  KFE------GIKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQ 118

Query: 136 ICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          IG     + +  +    TT  PI L+K L+ L  Q + +V +EASSHGL
Sbjct: 119 LLNLGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNNLKKQKIDNVIMEASSHGL 178

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q+RLDG+K     FTNL  DH+DYH+T   Y  +K+ LFE+LL      I  +     K
Sbjct: 179 KQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEYK 238

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            + + + N    + ++      I +       +KQ V I    K +     L G+ Q+ N
Sbjct: 239 NLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLQINLIGKIQLKN 298

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
             +A        +    +++   K+  V GRFE +GT     ++ +DYAHT ++L+  L 
Sbjct: 299 LFMAMLAAKKSNLKFDQIVKLASKVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTCLT 358

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           N++    + RI +VFGCGG+RD+ KRPIMGKIA    D   +TDDNPR E+P+KIR  I 
Sbjct: 359 NLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAIK 418

Query: 434 HGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
             I      E  +R +AI  AI  L   D+LV+AGKGHE      N   K S   +I++ 
Sbjct: 419 KTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEILKN 478

Query: 492 I 492
           I
Sbjct: 479 I 479



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 143/387 (36%), Gaps = 31/387 (8%)

Query: 1   MKLQD-LIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           +KL++ ++  +    ++ ++S  P      KI   S +S+ I+   IF AI GN +DG+L
Sbjct: 479 IKLKNKILSTNIKINILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNL 538

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA  ++ ++    +            +VVD+T + L+  +S+L       I+
Sbjct: 539 YVNEAFQNGASLVIANNQKKSKKK----------IVVDDTLQLLTEASSKLRENLSSKII 588

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           ++TG+ GK+S+   + +   +             IS+     +             +   
Sbjct: 589 SITGSCGKTSLKELLGKTLSK-------------ISNVTYSPKSFNNKFGVPLSLFNLKK 635

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +       +     G   +    IK   G  TN+   HI   +       AK  +    +
Sbjct: 636 NDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEII-NNI 694

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVE 296
                 ++  DD +     K A      + +   + K   I+L+K+    +K ++ ++V 
Sbjct: 695 KTNGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKEKSKYKIFVNVN 754

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K   F   L  E  + N L    +         L         +  GR + +       
Sbjct: 755 KKQIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYEIAKGRGDIIKVKLNKK 814

Query: 357 RIYV---DYAHTSNSLEMILKNIRTIT 380
            IY+    Y     SL+  +KN   + 
Sbjct: 815 SIYIVDESYNSNPLSLKSAIKNFDELK 841


>gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 495

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 149/491 (30%), Positives = 237/491 (48%), Gaps = 31/491 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +Y +   +   L+       + +IN +  ++ + Q G +F+A+ G    G   I +AI +
Sbjct: 29  LYNERMNITQLLADITPTKIDLEINGLCLNTHNAQTGDLFIALQGETTHGINHIERAIEK 88

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSG 125
           G  A++V         S  +    P++ ++N +++L   AS  Y +  +  ++ VTGT+G
Sbjct: 89  GCVAVLVD--------SHDLECAIPVIRIENLKQYLPALASAYYSQATKVEVIGVTGTNG 140

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV  F+ Q+    G+ +  IG    IS+    +  TTP    L KAL       +   
Sbjct: 141 KTSVGYFISQMLSELGIKNGFIGTLG-ISNSDVASANTTPDIFTLYKALHQYHLDNINTA 199

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSHGLDQ+R+ G+      FTNL +DH+DYHQT   Y   K++LF          I
Sbjct: 200 VLEVSSHGLDQNRVAGLNFKQAIFTNLTQDHLDYHQTLDEYRQVKLKLFS--FDSIQSVI 257

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DDAY ++ +  +        S+         +K+             +  +F F  P
Sbjct: 258 INQDDAYHQDFLDASKGKKQTTYSI------KDFEKITINEQG----FLCQLDNFVFEIP 307

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N L A      +G     ++  L +L    GR + +    +    +VDYAHT
Sbjct: 308 LLGKFNLSNVLAAFNSVEQLGFSREGIIPLLSRLFPPLGRMQKI----KKALAWVDYAHT 363

Query: 366 SNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            ++L   +  ++       I +VFGCGG+RD+ KR  MGKIA  LAD  ++T+DNPR ED
Sbjct: 364 PDALANAITTLKEHHPEHKIRIVFGCGGNRDKSKRAKMGKIASKLADTIVLTNDNPRKED 423

Query: 425 PEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ GI    E     +R  AI TAI  LN+ + L++AGKGHE+     N +  
Sbjct: 424 PQAIINDILSGIDDSFELDITLDRQLAIETAITTLNEGECLLIAGKGHESTQEFKN-KTT 482

Query: 482 MSVDCDIIREI 492
              D +I +  
Sbjct: 483 AFNDVEIAQNA 493


>gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
          Length = 519

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 140/508 (27%), Positives = 221/508 (43%), Gaps = 55/508 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    PE +  L     Q        + +DSR ++ G IF+A  G   DG + + +A+A+
Sbjct: 15  LLGSVPEALEWLRAHAPQG------ALRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A +V      +   A       +  + + +    L A+  +G   + +  +AVTGT+
Sbjct: 69  GAAACLVER----EGVEAFRFGAEGVAALRDLKAATGLLAADWFGMPTQRLDVVAVTGTN 124

Query: 125 GKSSVASFVQQICQRSGL----SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176
           GK+S   ++             +    G   T+      +      TTP P+ L +A + 
Sbjct: 125 GKTSTTWWIADALNLLAGSGLATHGGCGLIGTLGVGVPPSLQGTGLTTPDPVRLQQAFAG 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+   ++EASS GL +HRL G++L    FTN  +DH+DYH    AY+ AK  LF+ 
Sbjct: 185 FVANGLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFD- 243

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
             P    A++  DD    E+          + +    G      + V       + T++ 
Sbjct: 244 -WPGLQAAVVNIDDPRGGELSDTLAQRPIDLWTTSITGPARLQARDVTWGEGGLRFTVAE 302

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +       + G + ++N L       A+GI     L    +L  VPGR E +    + 
Sbjct: 303 GVQAHVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRMELIHEPGQ- 361

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             + VDYAHT ++LE  L+ +R +     GR+  VFGCGG+RD+ KRP+MG+IA   AD 
Sbjct: 362 PLVAVDYAHTPDALEQALQALRPVAEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADA 421

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ------------- 459
            IVT DNPR+E P  I  EI+ G                       +             
Sbjct: 422 VIVTSDNPRNEAPGAILHEILLGTVAGTTV------------QAEPERDAAIARAIADAD 469

Query: 460 --DVLVVAGKGHETVHIVTNGEKKMSVD 485
             DV+++AGKGHE     T G ++   D
Sbjct: 470 GRDVVLIAGKGHEDYQE-TAGVRRPFSD 496


>gi|222099423|ref|YP_002533991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571813|gb|ACM22625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 490

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 139/496 (28%), Positives = 234/496 (47%), Gaps = 25/496 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +       ++    +      + +I+ +S+ +  ++ G +F+   G K D H  IP+ I 
Sbjct: 1   MTISTIASILKDQILKVNAPMDLEISGISNHTSRVKKGDLFICRKGEKFDSHEIIPEVIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G                  +  + P ++V ++R F +  AS  +    ++ L    T  
Sbjct: 61  KG---------AVAVVVEREVNFDAPSILVFDSRYFEAKLASLFFEDPWKDTLTFGITGT 111

Query: 126 KSSVAS--FVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                +   +  +    G+    +      +        +TTP  I +  A+      G 
Sbjct: 112 NGKTTTTLMIYHMLTSMGVKGSALTTVLKNVLGKTYYEDITTPDAITVLSAMKENKDGGG 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ LL  + 
Sbjct: 172 RFFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDG 230

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            A++        E +  A +   R ++ G        L  +          +        
Sbjct: 231 FAVLN-------ESLSDALHRRVRKVTFGTSRNANYRLGNIEVSWEGTSFVLETPDGFLK 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV 360
                 G+F  YNA  A      +G D   + E LE    V GRFE V    + G  + V
Sbjct: 284 VFTRAIGDFNAYNAAAAIAALHQLGFDPKELAESLESFTGVEGRFEVVKAAKKSGFNVIV 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++  +LAD+ I+T D+P
Sbjct: 344 DFAHSPDALEKLLKNVRKISKGRVIVVFGAGGNSDRGKRPMMSRVVSELADVMILTTDDP 403

Query: 421 RSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R EDPE+I  ++I G+     ++   +R EAI TA+ + N+ D +VVAG+GHE   I+ +
Sbjct: 404 RGEDPEQIMEDLIKGVDKNKPYLVLFDRKEAIETALTIANRGDTVVVAGRGHERYQIIDD 463

Query: 478 GEKKMSVDCDIIREIL 493
            +K    D ++I EIL
Sbjct: 464 EKKIPFHDREVIEEIL 479


>gi|71082737|ref|YP_265456.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 948

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 165/481 (34%), Positives = 243/481 (50%), Gaps = 10/481 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N L     +++  +   +S +S   +  +IF AI G K DG  FI  AI +GA  I+   
Sbjct: 5   NFLKNIKKEFKNHQFAGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIISEQ 64

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            +        I++    L   N RK LS  + +     P+N++AVTGT+GKSS+A F  Q
Sbjct: 65  KFE------GIKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQ 118

Query: 136 ICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +          IG     + +  +    TT  PI L+K L+ L  Q + +V +EASSHGL
Sbjct: 119 LLNLGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNDLKKQKIDNVIMEASSHGL 178

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q+RLDG+K     FTNL  DH+DYH+T   Y  +K+ LFE+LL      I  +     K
Sbjct: 179 KQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEYK 238

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            + + + N    + ++      I +       +KQ V I    K +     L G+ Q+ N
Sbjct: 239 NLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLKINLIGKIQLKN 298

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
             +A        +    +++   ++  V GRFE +GT     ++ +DYAHT ++L+  L 
Sbjct: 299 LFMAMLAAKKSNLKFDQIVKLASRVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTCLT 358

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           N++    + RI +VFGCGG+RD+ KRPIMGKIA    D   +TDDNPR E+P+KIR  I 
Sbjct: 359 NLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAIK 418

Query: 434 HGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
             I      E  +R +AI  AI  L   D+LV+AGKGHE      N   K S   +I++ 
Sbjct: 419 KTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEILKN 478

Query: 492 I 492
           I
Sbjct: 479 I 479



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 144/387 (37%), Gaps = 31/387 (8%)

Query: 1   MKLQD-LIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           +KL++ ++  +    ++ ++S  P      KI   S +S+ I+   IF AI GN +DG+L
Sbjct: 479 IKLKNKILSTNIKINILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNL 538

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA  ++ ++    +            +VVD+T + L+  +S+L       I+
Sbjct: 539 YVNEAFQNGASLVIANNQKKSKKK----------IVVDDTLQLLTEASSKLRENLSSKII 588

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           ++TG+ GK+S+   + +   +             IS+     +             +   
Sbjct: 589 SITGSCGKTSLKELLGKTLSK-------------ISNVTYSPKSFNNKFGVPLSLFNLKK 635

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +       +     G   +    IK   G  TN+   HI   +       AK  +    +
Sbjct: 636 NDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEII-NNI 694

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVE 296
                 ++  DD +     K A      + +   + K   I+L+K+    +K ++ ++V 
Sbjct: 695 KTNGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKERSKYKIFVNVN 754

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K   F   L  E  + N L    +         L         +  GR + +    +  
Sbjct: 755 KKQIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYEMTKGRGDIIKVKLKKK 814

Query: 357 RIYV---DYAHTSNSLEMILKNIRTIT 380
            IY+    Y     SL+  +KN   + 
Sbjct: 815 SIYIVDESYNSNPLSLKSAIKNFDELK 841


>gi|225028091|ref|ZP_03717283.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
 gi|224954561|gb|EEG35770.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
          Length = 486

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 144/496 (29%), Positives = 234/496 (47%), Gaps = 31/496 (6%)

Query: 12  PELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            +L+  L    +Q   + K+  V +DSR I+ G +F+ I G   DGH F         EA
Sbjct: 4   SQLLEHLEYTCLQGSTDVKVTAVVNDSRKIEEGCLFLCIKGAAFDGHKFAA-------EA 56

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
               +A  + +    +  +  ++ VDNTR  ++L ++  +G   E +  +AVTGT GK++
Sbjct: 57  AEKGAAVLVVEDEVEVPDSVTVIKVDNTRYAMALISAAWFGYPAEELTTIAVTGTKGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               V+ + + +G     IG     I         TTP    +      ++ +    V +
Sbjct: 117 TTYMVKSLLEEAGHKVGVIGTIEVVIGQEHIPVNNTTPESYDIHSYFRKMAEEDCDVVVM 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAI 245
           EASS G    R  GI    G FTNL  DHI    H+    Y + K +LF +         
Sbjct: 177 EASSQGFKLDRTAGIMFDYGLFTNLSPDHIGPNEHKDFAEYLSCKAKLFNQC----RYGY 232

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ--QVTISVEGK-DFD 301
              DD +  E+ K   NA C + + G  +   +    V    ++    V   ++G  +  
Sbjct: 233 ANIDDEHFAEITK---NATCPIETFGLNENADLVAYDVELTRDRDFLGVDFGLKGTCEGK 289

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG F V+NAL A  +   +G+    + + L     V GR + V T      + +D
Sbjct: 290 ISCGVPGTFNVHNALGAISIAGHMGVTVEQMNKALRHFS-VKGRVQIVPTGYD-YTLIID 347

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH + +LE IL  +R     R+I +FGCGG+R + +R  MG+++  LAD  I+T DNPR
Sbjct: 348 YAHNAVALESILNTLRAYDPPRLISLFGCGGNRSKLRRYEMGEVSGKLADFTIITSDNPR 407

Query: 422 SEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            E+P+ I  +I+ G+      +I   +R EAI  A+      D++V+AGKGHET   +  
Sbjct: 408 FEEPQAIIDDILIGMKKTDGEYISIIDRHEAISYAMHHAQPGDIVVLAGKGHETYQEIE- 466

Query: 478 GEKKMSVDCDIIREIL 493
           G+K    + +I++++L
Sbjct: 467 GKKYHMSEEEIVQDVL 482


>gi|164686386|ref|ZP_02210416.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
 gi|164601988|gb|EDQ95453.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
          Length = 502

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 135/499 (27%), Positives = 239/499 (47%), Gaps = 31/499 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + K   +++   +     + + +I +++  S   Q G++FVA+ G   DGH ++  A ++
Sbjct: 4   LTKVLEDVVFTSNTDSKSFDDIEIVDIAYSSLKCQEGYMFVALKGETVDGHKYVFDAYSR 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA   V+     + D +         ++V+++R  LS  ++  +G   +   I+ VTGT 
Sbjct: 64  GARVFVLQDDIEMADDAIK-------IIVEDSRIALSKISANYFGNPSKSLKIIGVTGTK 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVT 183
           GK+++ +++ ++  R+G+++  +G   T  +   +    TTP    L +    +   GV 
Sbjct: 117 GKTTITNYISEVLNRAGINTGVVGTNGTFYNNISETTVNTTPESYELHRIFRKMLDSGVE 176

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
            VS+E SS GL +HR++ +      FTNL  DHI    H T Q Y   K +LF       
Sbjct: 177 CVSMEVSSGGLQRHRVEHVDFDVAIFTNLSPDHIGPKEHPTFQNYLECKAKLFT----LA 232

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCA----IHNKQQVTISVE 296
              II  DD +++E++  A    C + + G +    I    +           +     +
Sbjct: 233 KHGIINIDDEHAQEIIDIAT---CDIETFGIKKQADIRATNIEYSKNLDSLGVKFVCETK 289

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               ++    PG F +YNAL    +C  +G+   +  E L +   V GR E +       
Sbjct: 290 NTAGNYYICSPGMFSIYNALAVIAVCKYLGVKKEITREALTEAK-VCGRVEVLSVLPY-A 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +DYAH   SLE ILK +      R+I +FG  G R + +R  +G +A    D++I+T
Sbjct: 348 TIIIDYAHNGVSLENILKTLEHYDHKRLICLFGSVGGRTKIRRKELGDVASRECDLSILT 407

Query: 417 DDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNP  EDP +I  +I          +I + +R +A++ A+ M  + D++V+AGKGHET 
Sbjct: 408 SDNPDFEDPLEIIDDIAKSFDKAKSKYIVEPDRKKAVQLAVRMAREGDMIVLAGKGHETY 467

Query: 473 HIVTNGEKKMSVDCDIIRE 491
            ++  G K    + +I++E
Sbjct: 468 QLIK-GVKVPFSEREIVKE 485


>gi|291288108|ref|YP_003504924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885268|gb|ADD68968.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 484

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 154/496 (31%), Positives = 241/496 (48%), Gaps = 30/496 (6%)

Query: 12  PELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG- 67
            +L++ LSI         E  + +++ DSR+I+    F A  G   D H F  +  A G 
Sbjct: 4   SQLLDGLSIKGFDLDVDFETDVKDINIDSRNIKRKAPFFAFQGAAVDSHKFAAEVYASGK 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
              +V                  P +VV++ RK L+      +GK  E +  +AVTGT+G
Sbjct: 64  VPFVVAEHKIE----------GVPTVVVEDGRKALARACRNFFGKPDEEMDSIAVTGTNG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    + +I + +G  S  +G T             TTP      K L      G   
Sbjct: 114 KTTTTYIINEILKTAGRKSVLVGTTGVKYDDKFIYMDSTTPPTYEFFKVLRDAKDAGCDT 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +E SSH L QHR++G+      FTNL  DH+DYH+T   YF AK  LF    P+ S  
Sbjct: 174 LVMEVSSHALHQHRINGVVFDVAIFTNLSGDHLDYHKTMDEYFEAKKILFT---PEYSRV 230

Query: 245 IIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDF 302
            +   D  + + ++K A       +S G   K  I  +++    +  +          + 
Sbjct: 231 GVIGKDSEFGERLLKEAE---VDRVSYGITNKSEITAEEIWFGLSGLRAKFVYPAGSIEM 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G   + N + A   CI +GID+  +   +E+L  VPGR E     S G  I+VD+
Sbjct: 288 ESSLVGLHNLENLMAAGSGCIMLGIDAKHIKSGIERLKNVPGRLEKF-EKSNGAYIFVDF 346

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++L+ +L+ + +    R+I VFGCGGDRD+ KRP M K A   +D+ IVT DNPR+
Sbjct: 347 AHTDDALKNVLEALGSFKENRVITVFGCGGDRDRSKRPRMAKTAELDSDVVIVTSDNPRT 406

Query: 423 EDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP+++  +I+ G       I   +R +AI+ A+EM   +D++++AGKGHE   I+   E
Sbjct: 407 EDPQQVIEDILVGFENADSVIICPDRSKAIQKAVEMAEPKDIVLIAGKGHEDYMILGT-E 465

Query: 480 KKMSVDCDIIREILGL 495
           K    D + +++ L +
Sbjct: 466 KIHFDDREEVKKHLEV 481


>gi|325829979|ref|ZP_08163437.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
 gi|325488146|gb|EGC90583.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
          Length = 500

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 169/495 (34%), Positives = 256/495 (51%), Gaps = 18/495 (3%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL   +    +   + ++N ++  S  +Q G  F  +VG   DGH F   AI +GA
Sbjct: 3   KTCTELFAGIDCTILGNADDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + +VV     L D      ++   +VV +TRK ++  A+  Y    +++  + +TGT+GK
Sbjct: 63  KVLVVERKVYLAD-----ATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    V+ I + +G  +  IG     I   A+ +  TTP    L +  + +       V
Sbjct: 118 TTTTYLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVV 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH LD  R         +F+NL +DH+DYH T +AYF AK RLF +  P  +  +
Sbjct: 178 AMEVSSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYP--AKRV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I  DD + KE+++R   A   V++ G+      H   V        VT+ V G    F +
Sbjct: 236 ICIDDKWGKELLRRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDY 295

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYA 363
           PL G+F V N + A G+ + +G  +  ++E LE+   +PGR E V   + GG  ++VDYA
Sbjct: 296 PLVGKFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYA 355

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L +I  +T GR + VFGCGGDRD  KRPIMGK AL  AD A+VT DNPR+E
Sbjct: 356 HTPDALEKALASIMALTPGRTVCVFGCGGDRDASKRPIMGKAALA-ADHAVVTSDNPRTE 414

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  +I+ G+      F  + +R  AI  AI      D +++AGKGHE   +V +  
Sbjct: 415 DPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLVGDQV 474

Query: 480 KKMSVDCDIIREILG 494
                D  +  E L 
Sbjct: 475 LS-FDDRIVAAEELA 488


>gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 487

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 149/477 (31%), Positives = 238/477 (49%), Gaps = 28/477 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I +++ DSR +  G +F A  G++ DGH F+  AIA+GA A++V    +L        
Sbjct: 22  VAIADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIARGAVALLVQHEVAL-------- 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P LVV + R  +    +  +G+  E +  + +TGT+GK++ + F+  I   +G  + 
Sbjct: 74  -DIPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTTTSYFIDSILSLAGRRTG 132

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   +      + +  TTP    L + L  +   GV  V +E SSHG+DQHR+DG   
Sbjct: 133 LIGTIEARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVMEVSSHGIDQHRIDGTSF 192

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FTNL  +H+DYH T + Y+ AK +LF  L  +   A+I  D  +   +   A    
Sbjct: 193 RIGVFTNLSPEHLDYHGTIEQYYAAKAQLF--LPERTKQAVIGTDTEWGVRL---ATQVR 247

Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLC 322
              ++ G        ++ V         T+ V G + +    P+ G    YNA  A  + 
Sbjct: 248 IPAVTYGPAPFSDYRVEDVRYDEYGTIFTVVVGGRRRWRLRVPIYGIHNAYNAAAAVAVA 307

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381
            A+GI+   +   L + H V GRF+ +    +   + VDYAHT +SL  ++   R +   
Sbjct: 308 EALGIEGDTIERGLAECHQVAGRFQRIDA-GQPFTVVVDYAHTPDSLRALIATARALSPK 366

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           GR+I+V G  G RD+ KRP +G+ A   AD+AI+T DNP  EDP +I A+++ G      
Sbjct: 367 GRVILVAGARGRRDRLKRPELGRAAA-TADVAILTADNPGDEDPGEIVAQLLAGTLDVDH 425

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              I + +R  AI  AIE+  + DV+++ G+GHE    V     ++  D +  RE +
Sbjct: 426 KQIIVELDRRGAIGHAIEIAEESDVVLIVGRGHEQTFRVGQTVYRL-DDREAAREAI 481


>gi|260220010|emb|CBA27120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 499

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 148/485 (30%), Positives = 229/485 (47%), Gaps = 24/485 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R R +  +++DSR   +   F+A  G   D   F+  A+A+GA A +   + +       
Sbjct: 15  RSRGVQGLTTDSREATSVDAFIAWPGAATDPRRFVAPALAKGALACLAEQSGAEAFELDP 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+          +      A+  YG    ++  ++VTGT+GK+S A ++ Q   + G  
Sbjct: 75  DRTG----FYSGLKAGSGPIAAAFYGMPSRDLAVMSVTGTNGKTSTAWWLAQALGQVGGK 130

Query: 144 SFQ-IGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                G   T+             TTP P+ L K L   + QG+   ++EASS G+++ R
Sbjct: 131 EAMPCGVIGTLGVGRPPALKATGFTTPDPVLLQKTLRSFTEQGLKACAMEASSIGIEELR 190

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + G  +    FTN  +DH+DYH +  AY+ +K  LF         A++  DD    E+  
Sbjct: 191 MAGTVIHTAIFTNFTQDHLDYHGSMAAYWASKRALFS--WDGLKAAVVNVDDDKGAELAA 248

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKD-FDFLFPLPGEFQVYNAL 316
              +    V +VG Q +   L      H+ Q +    VEG++       + G + V N L
Sbjct: 249 ELASTSLDVWTVGVQ-RDARLVARGVTHSAQGLAFDVVEGRESVRLQSHVIGSYNVSNLL 307

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                   +GI     ++    L  VPGR E VG +S    + VDYAHT ++L   L+ +
Sbjct: 308 GVIAAMRTVGIPLQSAVQSCATLLPVPGRMECVGGDS-APLVAVDYAHTPDALAQALRAL 366

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +     G++  VFGCGGDRD  KRP+MG +A   ++ A+VT DNPRSE PE I A+I+
Sbjct: 367 QPVAQARGGKLWCVFGCGGDRDASKRPLMGAVAAAQSEHAVVTSDNPRSEKPEAIVAQIL 426

Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G+   P    + +R  AI  AI   + +DV+++AGKGHE    +  G K    D    R
Sbjct: 427 LGMVECPHVDVQVDRAVAIADAIRSADARDVILLAGKGHEETQEIA-GVKNPFSDMTHAR 485

Query: 491 EILGL 495
             L L
Sbjct: 486 SALAL 490


>gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
 gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
          Length = 493

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 144/509 (28%), Positives = 235/509 (46%), Gaps = 34/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         ++  ++    +Q   E ++ ++  DSR I    +FV +VG   DGH +
Sbjct: 1   MKLS--------KICEEIEYTLLQGSLETEVRDIIYDSRKIAPETMFVCMVGAVTDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP A+ + A  IV+      ++ +A I  N  +L V++ R  L+L ++ L+  HP   L 
Sbjct: 53  IPDAVEKEASVIVLEK----EEEAAQIPENITVLKVESARLALALMSAALF-DHPARKLV 107

Query: 120 VTG---TSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALS 175
             G   T GK++    ++++ + +G     IG     I      ++ TTP    L +  +
Sbjct: 108 TIGLTGTKGKTTTTYMIKKVLEMAGKKVGLIGTIGAMIGEEHLPSKNTTPESYELHRMFA 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
            +   G  +V +E SS GL   R  GI    G FTNL  DHI    H + + Y   K  L
Sbjct: 168 AMVEAGCEYVVMEVSSQGLKLDRTAGILFDYGIFTNLSPDHIGPAEHASFEEYMECKSLL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVT 292
           F +        I+ ADD +   ++K  H    +  S   +   +           K  + 
Sbjct: 228 FRQC----RIGIVNADDEHVDGILK-GHTCEVKTFSAEREADLMASDIGFINEDGKLGMH 282

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +V G  D      +PG F VYN++V   +C   GI    +LE L K+  V GR E +  
Sbjct: 283 FNVTGCMDCQAKVHIPGRFSVYNSMVTMLVCHLAGISDEAILEGLSKVQ-VKGRVEMLPV 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            S+   + +DYAH   S   +L  +      R+I V+G GG+R + +R  MG++  ++AD
Sbjct: 342 -SKDYTLIIDYAHNEVSTRSVLTTLMEYHPKRLICVYGGGGNRSKLRRYDMGEVTGEMAD 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + ++T DNPR E+   I  +I  G+      +IE  +R EAI   ++     D++V+ GK
Sbjct: 401 LCVLTCDNPRDEEIRDINNDIKVGLARSNGKYIEIDDRKEAIAYCMKNAKPGDMIVLLGK 460

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GHE    +  G K    + + + EIL  +
Sbjct: 461 GHEDYQEIK-GVKYHFDEREAVAEILDEM 488


>gi|257791846|ref|YP_003182452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
 gi|257475743|gb|ACV56063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
          Length = 500

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 169/495 (34%), Positives = 256/495 (51%), Gaps = 18/495 (3%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL   +    +   + ++N ++  S  +Q G  F  +VG   DGH F   AI +GA
Sbjct: 3   KTCTELFAGIDCTILGNADDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
           + +VV     L D      ++   +VV +TRK ++  A+  Y    ++  ++ +TGT+GK
Sbjct: 63  KVLVVERKVYLAD-----ATDVTEIVVKDTRKAMAAAAANFYDHPSKDIALVGITGTNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    V+ I + +G  +  IG     I   A+ +  TTP    L +  + +       V
Sbjct: 118 TTTTYLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVV 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH LD  R         +F+NL +DH+DYH T +AYF AK RLF +  P  +  +
Sbjct: 178 AMEVSSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYP--AKRV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I  DD + KE+++R   A   V++ G+      H   V        VT+ V G    F +
Sbjct: 236 ICIDDKWGKELLRRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDY 295

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYA 363
           PL G+F V N + A G+ + +G  +  ++E LE+   +PGR E V   + GG  ++VDYA
Sbjct: 296 PLVGKFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYA 355

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L +I  +T GR + VFGCGGDRD  KRPIMGK AL  AD A+VT DNPR+E
Sbjct: 356 HTPDALEKALASIMALTPGRTVCVFGCGGDRDASKRPIMGKAALA-ADHAVVTSDNPRTE 414

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  +I+ G+      F  + +R  AI  AI      D +++AGKGHE   +V +  
Sbjct: 415 DPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLVGDQV 474

Query: 480 KKMSVDCDIIREILG 494
                D  +  E L 
Sbjct: 475 LS-FDDRIVAAEELA 488


>gi|15609295|ref|NP_216674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Rv]
 gi|31793338|ref|NP_855831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis AF2122/97]
 gi|121638040|ref|YP_978264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661974|ref|YP_001283497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Ra]
 gi|148823367|ref|YP_001288121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis F11]
 gi|161350069|ref|NP_336687.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|224990534|ref|YP_002645221.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798777|ref|YP_003031778.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289554055|ref|ZP_06443265.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|306968293|ref|ZP_07480954.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308375793|ref|ZP_07445136.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308376926|ref|ZP_07668382.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308379133|ref|ZP_07485181.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|54037860|sp|P65478|MURE_MYCBO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041509|sp|P65477|MURE_MYCTU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2104320|emb|CAB08669.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat
           e ligase MurE [Mycobacterium tuberculosis H37Rv]
 gi|31618930|emb|CAD97035.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis AF2122/97]
 gi|121493688|emb|CAL72163.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148506126|gb|ABQ73935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate MurE
           [Mycobacterium tuberculosis H37Ra]
 gi|148721894|gb|ABR06519.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis F11]
 gi|224773647|dbj|BAH26453.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320280|gb|ACT24883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289438687|gb|EFD21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|308345197|gb|EFP34048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308349468|gb|EFP38319.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308354099|gb|EFP42950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308358073|gb|EFP46924.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|326903775|gb|EGE50708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis W-148]
 gi|328458540|gb|AEB03963.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 4207]
          Length = 535

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 150/471 (31%), Positives = 219/471 (46%), Gaps = 17/471 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 58  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 114

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 115 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 175 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 234

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M     
Sbjct: 235 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA 294

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V +      +            QQ T I   G        LPG + V N LVA  +
Sbjct: 295 DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAI 354

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L        
Sbjct: 355 LDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVL-TTLAHPD 411

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
            R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G      
Sbjct: 412 RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG 471

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
               +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 472 DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 521


>gi|289745330|ref|ZP_06504708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
 gi|289685858|gb|EFD53346.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 535

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 150/471 (31%), Positives = 219/471 (46%), Gaps = 17/471 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 58  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 114

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 115 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 175 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 234

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M     
Sbjct: 235 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA 294

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V +      +            QQ T I   G        LPG + V N LVA  +
Sbjct: 295 DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAI 354

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L        
Sbjct: 355 LDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVL-TTLAHPD 411

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
            R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G      
Sbjct: 412 RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG 471

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
               +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 472 DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 521


>gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Weiss]
 gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum MopnTet14]
 gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 483

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 148/505 (29%), Positives = 245/505 (48%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR    G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLRDIPAKIYGKVESIP-------VRNLTRDSRCTGVGDIFIARQGQMCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+  GA AI+ S              +   +V ++     +  A+R Y    + +  +
Sbjct: 54  GQAVENGAIAILSS--------LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V++  +++ +  G  +  +G    I       +  TTP  I L K  + +
Sbjct: 106 GVTGTNGKTTVSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   VE SS GL   R+   + +AG  TN+  DH+D+H + + Y  AK +LF  L
Sbjct: 166 VKQNLSSAVVEVSSIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVSL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
            P+   A++ +D  Y++  ++ +     R +S   +Q        +          I  +
Sbjct: 226 -PEHGVAVVNSDCEYAQSFLEISP---ARGVSYAVHQEADYRAVNLKFSSLGSTFDILYQ 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G  F     L GE  VYN L A  +    +G D A ++ ++  L    GR E V +    
Sbjct: 282 GNVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGPCP 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             IY+DYAHT ++L+ + K +  +    GR+I+VFGCGGDRD  KRPIM K+A      +
Sbjct: 342 --IYIDYAHTPDALDNVCKILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVAETY-GFS 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M   +D+++VAGKGHE 
Sbjct: 399 VVTSDNPRTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEV 458

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I  +    +  D +++ E L  I
Sbjct: 459 YQIFKHQTI-VFDDREVVCEALASI 482


>gi|222474927|ref|YP_002563342.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
 gi|255002901|ref|ZP_05277865.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Puerto Rico]
 gi|222419063|gb|ACM49086.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
          Length = 472

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 160/473 (33%), Positives = 250/473 (52%), Gaps = 25/473 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++DSR ++ G+IFV +      G  F+P A+  GA+ IV  +A  L         ++
Sbjct: 15  SGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHV-----DHS 66

Query: 91  PILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I++           AS   +G  PE +  VTGT+GK+SVA F +QI   +G +   +G 
Sbjct: 67  QIIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126

Query: 150 TSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              I   ++       TTP  + L K LS L    V ++ +EASSHG+ Q RL G+K   
Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL  DH+DYH + + Y+  K +LF E+L +E  A++ AD    +E+ + A      
Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSREGCAVLNADSEQYEELRELAAGRN-- 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++ G     + L ++        +T+ + G+  +D  FP+ G+FQ+ N L A  +  A 
Sbjct: 245 IITYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAIVAAS 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
           G  S      +++L    GR E +     G RI +DYAHTS++L+  L +++      + 
Sbjct: 305 G--SGHRDVPIDRLASPRGRMELI-----GDRIIIDYAHTSDALKHALTSLKWHGFPQKT 357

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           ++VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPRSE+PE IR EI+      IE  +
Sbjct: 358 VLVFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPD 417

Query: 445 RIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R +AI  A+    + + VL++AGKGHET   +     +   D   +R  L  +
Sbjct: 418 RGDAIHYAVNFAIRNNYVLLIAGKGHETTQQIAGKSVE-FNDGTAVRRCLSEM 469


>gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
          Length = 486

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 148/505 (29%), Positives = 245/505 (48%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR    G IF+A  G   +G+ + 
Sbjct: 4   MHLDQLLRDIPAKIYGKVESIP-------VRNLTRDSRCTGVGDIFIARQGQMCNGNDYS 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+  GA AI+ S              +   +V ++     +  A+R Y    + +  +
Sbjct: 57  GQAVENGAIAILSS--------LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V++  +++ +  G  +  +G    I       +  TTP  I L K  + +
Sbjct: 109 GVTGTNGKTTVSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   VE SS GL   R+   + +AG  TN+  DH+D+H + + Y  AK +LF  L
Sbjct: 169 VKQNLSSAVVEVSSIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVSL 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
            P+   A++ +D  Y++  ++ +     R +S   +Q        +          I  +
Sbjct: 229 -PEHGVAVVNSDCEYAQSFLEISP---ARGVSYAVHQEADYRAVNLKFSSLGSTFDILYQ 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G  F     L GE  VYN L A  +    +G D A ++ ++  L    GR E V +    
Sbjct: 285 GNVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGPCP 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             IY+DYAHT ++L+ + K +  +    GR+I+VFGCGGDRD  KRPIM K+A      +
Sbjct: 345 --IYIDYAHTPDALDNVCKILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVAETY-GFS 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M   +D+++VAGKGHE 
Sbjct: 402 VVTSDNPRTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEV 461

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I  +    +  D +++ E L  I
Sbjct: 462 YQIFKHQTI-VFDDREVVCEALASI 485


>gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 534

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 149/507 (29%), Positives = 232/507 (45%), Gaps = 34/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L D++ +     I   ++ P    +  +  V  DSR +  G IFVA  G +  G  FI
Sbjct: 18  LRLGDVLRE-----IPGAALSPAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+A+A+GA A++V+   +     A          V +    L+  A+ +YG     +  +
Sbjct: 73  PEAVARGARAVIVARGSAADTLGAARVE------VPDVPLALAQAAAVVYGHPTFTLEVV 126

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  VQ    R G  +  +G               T+P    LA+  + +
Sbjct: 127 GITGTNGKTTTAHLVQACIDRCGGQAGIVGTLGYRFGDLDVHASHTSPEADELARVAAAM 186

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G TH+ +E SS  L   R+D ++     FTNL +DH+DYH T +AY  AK RLF +L
Sbjct: 187 VARGATHLVMEVSSIALAAKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARLFVDL 246

Query: 238 LPKESPAIIYADDAYSKEVMKRAH------------NAGCRVLSVGYQGKFIHLKKVCAI 285
            P    A+I  DD + +++++                     +  G     I   ++   
Sbjct: 247 GP--GAAVINVDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVELAHS 304

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +   +       +      L G     N L A  +   +G D       L     V GR
Sbjct: 305 ASGTFIRARTPAGEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALSSPIQVAGR 364

Query: 346 FEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E           + VDYAHT ++L  +L ++R +  GR++ VFGCGGDRD  KRP MG+
Sbjct: 365 LERCDAPGADDVIVLVDYAHTPDALARVLASVRALGGGRVLCVFGCGGDRDPLKRPQMGE 424

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460
               +AD+AIVT+DNPRSEDP  I   I+ G+       + + +R  AI  A+      D
Sbjct: 425 AVGRVADVAIVTNDNPRSEDPRAIADAILPGLAAGRARVVVELDRARAIERAVLDAEPGD 484

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCD 487
           V+++AGKGHE   I+  G      D D
Sbjct: 485 VVLIAGKGHEPYQII-GGVTLPFDDRD 510


>gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 501

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 148/511 (28%), Positives = 232/511 (45%), Gaps = 33/511 (6%)

Query: 1   MKLQDLIY----KDFPELINQLSIFPMQWRE------RKINEVSSDSRHIQAGWIFVAIV 50
           M L+DL      +   E++++L        +      R I  V  DSR ++ G ++ A+ 
Sbjct: 1   MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALP 60

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G +  G  F  +A A+GA A++      +           P +VVD+ R  L   A+  Y
Sbjct: 61  GRRHHGADFASEATARGAVAMLSDRPSDI----------VPTVVVDDPRVALGPLAAWAY 110

Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRLTTPSP 167
           G      ++  VTGT+GK+S    ++     +GL +  + G T       +    TTP  
Sbjct: 111 GNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTVRPATRTTPEA 170

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             L ++      +GV  V++E SSHGL +HR+DG +   G FTNL RDH+DYH   +AY+
Sbjct: 171 CELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYY 230

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK RLFE  L +   A +  DD Y + +            S    G  ++   V A   
Sbjct: 231 AAKARLFERDLCER--AAVCIDDDYGRRLAAEVAVPHL-TFSARDPGADVYATTVRAQRW 287

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+   G+       + G  QV NA+ A       GID    +  +E L  +PGR E
Sbjct: 288 GSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE 347

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V    +     VDY H +     +   +R++T GRI+VV G  G+RD GKR  +G  A 
Sbjct: 348 RVDV-GQPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLGFTAA 406

Query: 408 DLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             A++ +VTD++  S+D   +R          G    +   +R EAI  A+++    D +
Sbjct: 407 RYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTV 466

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AG+GH+   +V +G      D   +R  L
Sbjct: 467 LLAGRGHDPA-LVDDGVATAFDDRAALRNAL 496


>gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 497

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 146/500 (29%), Positives = 243/500 (48%), Gaps = 22/500 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+++    K+  E +    +F     ++ + ++ +DSR ++AG  F+AI G   DGH  I
Sbjct: 1   MRMK---QKELIEALYNKKLFDQIDLDQTVTKLVNDSRQVEAGACFIAIKGENFDGHQAI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            + +AQGA+ I+V     L     TI +N   ++VD++ +  ++ A++ Y +    +  +
Sbjct: 58  AEVVAQGAKLIIVEQ---LPANYQTIPAN--FVLVDSSFRAQAILANKFYQEPSRKLKVV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++ +S +  +       + +IG     ++        TTP+ ++L    + +
Sbjct: 113 AVTGTNGKTTTSSMISDLLTSLDHKTGKIGTLHYKVADTYYPAVNTTPNALHLQALFAEM 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G     +EASSH L   RL    +    FTNL R+H+D+H+T   Y  AK  LF +L
Sbjct: 173 LERGCQDAVIEASSHALSLGRLWYTDVDCAIFTNLTREHLDFHKTMDNYAYAKSLLFSQL 232

Query: 238 LPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                      AII  DD Y  EVM +A  A     S+  +    +  ++          
Sbjct: 233 GQAFHQGRPRLAIINKDDPYW-EVMAQATAADLVTYSLVDEEATAYASQIQNKETGLAFK 291

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +    + F+   P+ G + V N L A   L     ID A +L   +    V GR E +  
Sbjct: 292 LHFNDQVFELELPMRGHYNVSNYLAAFLCLACYYEIDVANILRATKDFKGVSGRMEVLAL 351

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLA 410
           N +   + VD+AHTS++LE +++ + +   GR++ + G  GG+RD G RP +G +  + A
Sbjct: 352 N-KDFDVVVDFAHTSDALERVMQELVSHKQGRLLALMGHSGGNRDSGARPGIGDVLFNYA 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D  + T DNPR ED  KI  E+I  H    +    +R  A+ T +EM    DVL+ AGKG
Sbjct: 411 DYIVFTADNPRFEDVTKICHEMIGQHDEKPYTIVEDRKAAVITMLEMAQSGDVLLFAGKG 470

Query: 469 HETVHIVTNGEKKMSVDCDI 488
            E   I+ + +       +I
Sbjct: 471 GEGYQIIGDQKIPYDDAEEI 490


>gi|226360235|ref|YP_002778013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238720|dbj|BAH49068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus opacus B4]
          Length = 524

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 153/478 (32%), Positives = 240/478 (50%), Gaps = 23/478 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V   ++ I  G +F A+ G +  G  F   A+ +GA AI+   A       + + ++
Sbjct: 40  VTGVDLRAQGIVEGDLFAALPGARAHGAEFAADALDRGATAILTDEAGLA--LVSALGTD 97

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LV D+ R  L   ++ +YG+  E   ++ +TGTSGK++ +  V+     +G ++  +
Sbjct: 98  APVLVHDDPRGVLGELSATIYGRPSEKMQVIGITGTSGKTTTSYLVEGALNAAGRTTGLV 157

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T +S     + LTTP    L    + +  QG+  V +E SSH L   R+DG++   
Sbjct: 158 GTIETRMSGRRVPSALTTPEAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDV 217

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           G+FTNL +DH+D+H+  + YF AK RLF  E       A+I  DD + + + + A  A  
Sbjct: 218 GAFTNLSQDHLDFHRDFEDYFAAKARLFAAESSVHAQHAVICVDDVWGRRMAEVARGAHS 277

Query: 266 RVLSVGYQGK-----FIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAA 319
            V +V    +     +       +    Q+  ++  EG   D    LPG++ V NA +A 
Sbjct: 278 IVTTVATTPETGGAVWTAGPATVSASGSQKFALTTAEGTTLDVELRLPGQYNVANASLAV 337

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            LC  +G+D    +  +  +  VPGR + +    +     VDYAH   ++E ++  +R  
Sbjct: 338 ALCAVLGVDPRDAVAGIAGVD-VPGRVQRID-RGQDFLAVVDYAHKPAAVEAVIATLREQ 395

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR+ VV G GGDRD GKRP+MG  A   AD+ I+TDDNPR+EDP  IRA I  G  G 
Sbjct: 396 ARGRVAVVVGAGGDRDAGKRPLMGAAAARGADLLIITDDNPRTEDPATIRAAIREGALGV 455

Query: 439 -------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                    E  +R +AI  A+      DV++VAGKGHE    + +G K    D  ++
Sbjct: 456 PESERGQVWEVADRAKAIADAVGWAQAGDVVLVAGKGHEIGQEI-HGVKYPFDDRAVL 512


>gi|271964369|ref|YP_003338565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
 gi|270507544|gb|ACZ85822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
          Length = 514

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 148/476 (31%), Positives = 234/476 (49%), Gaps = 20/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR +Q G ++VA+ G    G  F  QA+A GA AI+       +  +A + + 
Sbjct: 32  VSGITIDSRQVQRGDLYVALPGATSHGAGFSAQALAAGASAILTDE----EGRAAAVATG 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQI 147
            P+LVV + R+ L   ++ +YG+   +++ +  T       +   ++   + +G  +  I
Sbjct: 88  LPVLVVPDPRRVLGQVSAWVYGRPAADVMVIGVTGTSGKSTTTFLLEAGLRAAGHKAGLI 147

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G             +LTTP    L    + +   GVT  ++E SSH L   R+D +    
Sbjct: 148 GGVEIHAGELRFTPKLTTPEASDLQGLFALMREHGVTAAAMEVSSHALALGRVDAVFYDV 207

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+D+H+    YF  K RLF   + +     +  DDA+ +E++  +      
Sbjct: 208 ALFTNLSQDHLDFHKDLDDYFATKARLFTPEMSRAGV--VNIDDAHGRELLGLSKIPMTT 265

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             + G          V    +     +   G  + D    LPG F V NAL A    +  
Sbjct: 266 FSAEGALEADWRAADVRLGADGSSFRVVGPGGVEEDATVALPGPFNVANALGAIVSLVEA 325

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+     +  +  L  VPGR E V       +  VDY+H   ++E +L+++R +T+GR+ 
Sbjct: 326 GVPLRAAVAGVGTLAGVPGRMERVP-GGEDFQAIVDYSHKPGAVESVLRSLREVTTGRLT 384

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------- 438
           VV GCGGDRD+GKRP+MG+ A  LAD+AI+T DNPRSEDP +I AE+++G  G       
Sbjct: 385 VVLGCGGDRDRGKRPMMGEAAARLADVAILTSDNPRSEDPLRILAEMMNGALGVSHDERA 444

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             I + +R  AI  AI      DV+VVAGKGHE    V + E     D  ++ + +
Sbjct: 445 HVIIEPDRAAAIDLAISRAGFGDVVVVAGKGHEQGQYVGD-EVLPFDDRQVVADAI 499


>gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
 gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
          Length = 472

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 164/499 (32%), Positives = 251/499 (50%), Gaps = 39/499 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +    DF E++ +L+          I   SSDSR I+ G+ F  + G ++DG  +I
Sbjct: 1   MKSSN----DFLEMLEELNPRLSGVLPELIYGFSSDSRKIKEGFAFSVLKGTQQDGKAYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+A+GA  ++      +           P + +D+ RK  +L A   +    EN+  +
Sbjct: 57  TEALAKGARLLLCEEFLDVA---------IPQICIDDIRKANALLADLFHAHVSENLKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GKSS A  +Q +    G S+  IG     +    + + LTTP    L    + +
Sbjct: 108 AVTGTNGKSSTAYIIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEV 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +V +EASSHGLDQ RL G+   A  FTNL  DH+ YH + + YF+AK  LF++ 
Sbjct: 168 AKGGAEYVVLEASSHGLDQQRLYGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +DDAY K +     ++  +V S         L+           ++ +EG
Sbjct: 227 -YDSKIKIVNSDDAYGKRL----RDSQTKVFSQDPDSDCQVLQN----------SVKLEG 271

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +   L  L GE+ +YNA  A  L   I   S    +   +EK   +PGR E    N  G
Sbjct: 272 TE-CLLPQLLGEYNIYNAAGAMLLVKEILGPSYVGKIKLAMEKFSGIPGRMELFKKN-NG 329

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ VD+AH   +LE ++  +R     ++ +VFGCGGDRD  +R  MG+ A DLAD  I+
Sbjct: 330 AQVIVDFAHAQEALEKVICELRKNCREKLSIVFGCGGDRDPARRYGMGE-ASDLADEVIL 388

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           T+DNPRSEDP++I  +I+           +R +AIR A E L   D L++AGKGHE   I
Sbjct: 389 TNDNPRSEDPQQIINDILSSKKKEARVIFDREQAIRLAWEELEPNDCLLIAGKGHEEKQI 448

Query: 475 VTNGEKKMSVDCDIIREIL 493
             +  +    D  + R+++
Sbjct: 449 FKDHIES-FSDRSLCRKLI 466


>gi|254370090|ref|ZP_04986096.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151568334|gb|EDN33988.1| hypothetical protein FTBG_01187 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 484

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 241/490 (49%), Gaps = 23/490 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 7   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 67  SLVLTD--------SHEFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY   +   ++ 
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISY--YKNYQNLV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +           +S+  +   +++K       K +  +   G+   ++   
Sbjct: 235 NIDDEYGQRLCNMTQ-VPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 294 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL-DNDIKIVIDYAHT 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  
Sbjct: 351 PDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESI 410

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE   +  NG K+ 
Sbjct: 411 ENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECY-LDKNGAKEY 469

Query: 483 SVDCDIIREI 492
             + +II+ +
Sbjct: 470 FDEREIIKNM 479


>gi|56707568|ref|YP_169464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670039|ref|YP_666596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134302497|ref|YP_001122467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931371|ref|YP_001891355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|224456637|ref|ZP_03665110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254874387|ref|ZP_05247097.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604060|emb|CAG45053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320372|emb|CAL08436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134050274|gb|ABO47345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187712280|gb|ACD30577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|254840386|gb|EET18822.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158724|gb|ADA78115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 479

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 241/490 (49%), Gaps = 23/490 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  SLVLTD--------SHEFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISY--YKNYQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +           +S+  +   +++K       K +  +   G+   ++   
Sbjct: 230 NIDDEYGQRLCNMTQ-VPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL-DNDIKIVIDYAHT 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  
Sbjct: 346 PDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESI 405

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE   +  NG K+ 
Sbjct: 406 ENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECY-LDKNGAKEY 464

Query: 483 SVDCDIIREI 492
             + +II+ +
Sbjct: 465 FDEREIIKNM 474


>gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. novicida U112]
 gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
 gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella novicida U112]
 gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
          Length = 479

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 239/490 (48%), Gaps = 23/490 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I+ +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y  + P+NI+ +TGT+GK+
Sbjct: 62  SLVLTD--------SHQFEDQKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY       ++ 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYKTISYYKK--YQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AI+
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAIV 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +           +S+  +   +++K       K +  +   G+   ++   
Sbjct: 230 NIDDEYGQRLCNMTQ-VPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKPVKGRMEVIEL-DNDIKIVIDYAHT 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  
Sbjct: 346 PDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESI 405

Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I  +I  G       I   +R +AIR +IE  N+ D++++AGKGHE   +  NG K+ 
Sbjct: 406 ENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHECY-LDKNGAKEY 464

Query: 483 SVDCDIIREI 492
             +  II+ +
Sbjct: 465 FDERKIIKNM 474


>gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
 gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
          Length = 503

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 141/482 (29%), Positives = 217/482 (45%), Gaps = 27/482 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR +Q G  F+A  G+  DG  F+  A+A GA   +V +    +   A    +  I
Sbjct: 23  LRTDSRLVQRGDAFIAWPGHATDGRRFVKAALAAGAATCLVEA----EGVDAHGFDDARI 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +   +      A   +G+  +   ++A TGT+GK+S A +  Q     G     +G  
Sbjct: 79  GALPGLKAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLLGRRCGVVGTL 138

Query: 151 S-------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                      +      LTTP P+ L   L  ++  G    ++EASS G+ +HRL  ++
Sbjct: 139 GIGEPPLPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIGIVEHRLAALR 198

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTN  RDH+DYH +  AY+ AK  LF    P    A +  DDA   E+ +     
Sbjct: 199 IEVALFTNFTRDHLDYHGSMDAYWAAKRVLFG--WPGLKAAAVNLDDAQGAELARSLAGH 256

Query: 264 GCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              + +   +   + L  + +  +      T+   G        L G++   N L   G 
Sbjct: 257 VPELWTYSLERDDVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYNAANLLAVIGG 316

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKNIRT 378
             A+G+  A  +  + +L  VPGR + V  ++       + VDYAHT ++LE  L  +R 
Sbjct: 317 LRALGVPLADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDALEKALGALRP 376

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI--- 432
           +     GR++ VFGCGG+RD  KRP+M  +A  LAD  I T DNPR E P  I  ++   
Sbjct: 377 LAAARGGRLLCVFGCGGNRDASKRPLMAAVAERLADRVIATSDNPRDEAPAAILVDVAAG 436

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                      +R  AI  AI     +DVL++AGKGHE    +  G K+   D    R+ 
Sbjct: 437 FAAPAAVEMIEDRRAAIARAIGSAEARDVLLIAGKGHEDYQEIA-GVKQPFSDVAEARQA 495

Query: 493 LG 494
           L 
Sbjct: 496 LA 497


>gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 526

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 152/532 (28%), Positives = 239/532 (44%), Gaps = 61/532 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+L        I+   +      +  + ++  +++ +  G +F  + G    G  F   
Sbjct: 4   LQELAE------ISGGRLIRTDDPDLVVTDIGLNAQALPEGGLFAGVPGLHVHGAQFADS 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
                A A++       +      R + PI+VVD+ R  L   +S +Y     ++  + +
Sbjct: 58  ---SSAAAVLTDHDGVEK----VTREDLPIIVVDDVRAVLGEVSSAVYDHPSRDLTVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++ +  V+      G+S+  IG T T I+     + LTTP    L    + +  
Sbjct: 111 TGTAGKTTTSYMVEAALLHHGISTGLIGTTGTRINGEKVPSTLTTPEAPNLQALFAMMKK 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV +E SSH +   R+ G       FTNL +DH+D+H T + YF  K RLF+E  P
Sbjct: 171 RGVTHVVMEVSSHAIALGRVLGTHFSVAGFTNLSQDHLDFHPTMEDYFQTKARLFKEDSP 230

Query: 240 -KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                +++  DDA+ + +     +      +V  +    H   +         ++   G 
Sbjct: 231 LHAETSVVCIDDAWGQRLATMLPHP----FTVSTEAASEHDASLQPDVWAGPSSVMDNGV 286

Query: 298 ----------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                      +     P+PG F V NA++A GL +  G+ +   +E L  +  VPGR E
Sbjct: 287 QTAELYGFGANEMTLHIPMPGRFNVANAMLAMGLLVKTGMKAEDAIEGLSTVT-VPGRLE 345

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +    +     VDYAH   ++  +L  +R    GRI +V G GGDRD  KRPIMG+ A 
Sbjct: 346 RIDC-GQDFMAVVDYAHKPGAIAAVLDTLRAHVRGRIAIVVGAGGDRDHSKRPIMGREAA 404

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---------------------------PGFI 440
             +D+ IVTDDNPRSEDP  IR +++ G                            P   
Sbjct: 405 LRSDLVIVTDDNPRSEDPASIRQQVVAGAKEVADHVDVDRADEPRNKVKTEGSEHRPTIR 464

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           E G+R EAIR AI+     D ++VAGKGHET  ++ +         +  R I
Sbjct: 465 EIGDRREAIRAAIQWTQPGDAVIVAGKGHETGQLIGDTTHPFDDRVETRRSI 516


>gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 519

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 137/508 (26%), Positives = 219/508 (43%), Gaps = 55/508 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    PE +  L              + +DSR ++ G IF+A  G   DG + + +A+A+
Sbjct: 15  LLGSVPEALEWLRAHAPHG------ALRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A +V      +   A       +  + + +    L A+  +G   + +  +AVTGT+
Sbjct: 69  GAAACLVER----EGVEAFRFGAEGVAALRDLKAATGLLAADWFGMPTQRLDVVAVTGTN 124

Query: 125 GKSSVASFVQQICQRSGLS----SFQIGPTSTISSFAQDNRLTT----PSPIYLAKALSY 176
           GK+S   ++     +   S        G   T+          T    P P+ L +A + 
Sbjct: 125 GKTSTTWWLADALNQLAGSGLAAHGGCGLIGTLGVGVPPELECTGLTTPDPVRLQQAFAG 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+   ++EASS GL +HRL G++L    FTN  +DH+DYH    AY+ AK  LF+ 
Sbjct: 185 FVANGLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFD- 243

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
             P    A++  DD    E+          + +    G      + +       + T++ 
Sbjct: 244 -WPGLQAAVVNIDDPRGGELADTLAQRPIDLWTTSITGPARLQARDITWGEGGLRFTVAE 302

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +       + G + ++N L       A+GI     L    +L  VPGR E +    + 
Sbjct: 303 GVQAHVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRMELIHEPDQ- 361

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             + VDYAHT ++LE  L+ +R +     GR+  VFGCGG+RD+ KRP+MG+IA   AD 
Sbjct: 362 PLVAVDYAHTPDALEQALQALRPVAEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADA 421

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ------------- 459
            IVT DNPR+E P  I  EI+ G                       +             
Sbjct: 422 VIVTSDNPRNEAPGAILHEILLGTVAGTTV------------QAEPERDAAIARAIAEAD 469

Query: 460 --DVLVVAGKGHETVHIVTNGEKKMSVD 485
             DV+++AGKGHE     + G ++   D
Sbjct: 470 GRDVVLIAGKGHEDYQE-SAGVRRPFSD 496


>gi|120404500|ref|YP_954329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957318|gb|ABM14323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 497

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 153/478 (32%), Positives = 234/478 (48%), Gaps = 17/478 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + ++  V+   +  Q G +F A+ G++  G  +  +A+ +GA A++  +A   +  ++ 
Sbjct: 17  PDVQVTGVTLRGQDAQPGDLFAALPGSRAHGGRYAAEAVGRGAVAVLTDAAGEAE-IASR 75

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
              + P+LV  + R  L   AS +YG+  +   ++ VTGTSGK++    V+   + +G  
Sbjct: 76  GAPDVPVLVHPDPRAVLGELASAVYGRPSQHLRVIGVTGTSGKTTTTYLVEAGLRAAGRV 135

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     I    Q   LTTP    L   L+ +  QGV  V +E SSH L   R+DG+
Sbjct: 136 AGLIGTVGVRIDGRQQPGGLTTPEAPELQALLATMLEQGVDTVVMEVSSHALTLGRVDGV 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAH 261
               G FTNL RDH+D+H T + YF+AK RLF+       + ++I  DD + +  M    
Sbjct: 196 SFAVGGFTNLSRDHLDFHPTMEDYFDAKARLFDPACATHAARSVICVDDEWGRA-MAARA 254

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                V + G        ++V +     Q  V +   G        LPG + V N L+A 
Sbjct: 255 RRPVTVSTTG--PADWRAEQVRSAGGGAQDFVAVDPAGVHHGLEIGLPGGYNVANCLLAI 312

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A+G+        +     VPGR E V    +     VDYAH   +L  +L+ +R  
Sbjct: 313 ALLDAVGVSPEQAAPGVRD-ATVPGRLESVD-RGQPFLALVDYAHKPGALRAVLQTLREQ 370

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE----KIRAEIIHG 435
            +GR+ VVFG GG+RDQGKR  MG++A +LAD+ +VTDDNPR EDP      I A     
Sbjct: 371 CTGRLAVVFGAGGNRDQGKREPMGRVAAELADLVVVTDDNPRDEDPAVIRAAILAGAAGA 430

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +E G+R  AI  A       D++++AGKGHE     + G+ +   D D +   L
Sbjct: 431 RAEVVEIGDRRAAIGHAAGWARAGDIVLIAGKGHEAGQT-SGGQTRPFDDRDELAAAL 487


>gi|320007082|gb|ADW01932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 515

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 153/515 (29%), Positives = 243/515 (47%), Gaps = 51/515 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L+            I      +  I    + D+  +  G +F+A+ G+ E G   
Sbjct: 1   MKLSELLAGQ------NHHIRQGDPEKALITAGTAFDADRVVPGSLFIAVPGHLEGGP-- 52

Query: 60  IPQAIAQGAEA---------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
                  GA A         +VV     +     T   +  ++ V + R+  ++ ASR +
Sbjct: 53  -------GAVAPALARGAAAVVVEDGCVVP----TAAGDVCVVQVPDARRTAAVAASRYF 101

Query: 111 GKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--- 165
           G+    +  +A+TGT+GK+SV+  V+   + S     + G   T  S   D  +  P   
Sbjct: 102 GEPGRRMDMVAITGTNGKTSVSYMVESALRIS--EGARAGVIGTAGSRIGDELIPMPRSV 159

Query: 166 ----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L   L Y+  +GV  V +EA+S GL  HR+D   +  G FTNL +DH+D H 
Sbjct: 160 LSTPESPDLQYLLGYMRDRGVGTVVLEATSMGLLTHRIDRTFIDVGVFTNLSQDHLDDHG 219

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T + Y +AK+RLF+ L      A++ ADD     +      A     ++  +  F     
Sbjct: 220 TMENYRDAKLRLFQGL---CEHAVVNADDPVGARIGAMMPGA-VTTYALDAEADF-RATD 274

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + A  +  + T+  +G+ +    P PG F V NAL A   C  +G D A ++  L ++  
Sbjct: 275 LTADASGTRFTLHHQGRKYPAAIPTPGRFSVSNALAAMAACHTLGHDLAGLVSALGRMPQ 334

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGRFE + T   G  + VDYAH+ +SLE +L  +R      ++ VFGCGGDRD  KR  
Sbjct: 335 IPGRFERLTTVG-GTSVIVDYAHSPDSLEKVLGAVRGFARSAVVTVFGCGGDRDTTKRTD 393

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           MG+IA   +D+ ++T DNPR+EDPE I  +++ GI      +    +R  AI  A+    
Sbjct: 394 MGRIAGTHSDLVVLTSDNPRTEDPEVIMDQVVPGIEATGTPYERFTDRRTAIEFALSAAG 453

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             D++++AGKG E   IV +       D   +R++
Sbjct: 454 PDDIVLIAGKGSEPYQIVGD-VLLPFSDVATVRDL 487


>gi|56416559|ref|YP_153633.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
 gi|81359238|sp|Q5PBF1|MURE_ANAMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56387791|gb|AAV86378.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
          Length = 472

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 161/473 (34%), Positives = 248/473 (52%), Gaps = 25/473 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++DSR ++ G+IFV +      G  F+P A+  GA+ IV  +A  L         ++
Sbjct: 15  SGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHV-----DHS 66

Query: 91  PILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I++           AS   +   PE +  VTGT+GK+SVA F +QI   +G +   +G 
Sbjct: 67  QIIICPMQHDLYYKLASEFYHASQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126

Query: 150 TSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              I   ++       TTP  + L K LS L    V ++ +EASSHG+ Q RL G+K  A
Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASA 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL  DH+DYH + + Y+  K +LF E+L  E  A++ AD     E+ + A      
Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELAAGRN-- 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++ G     + L ++        +T+ V G+  +D  FP+ G+FQ+ N L A  +  A 
Sbjct: 245 IITYGVDTGDVKLARLERNTQGHNITVKVCGEVIYDGAFPVLGKFQISNLLCALAIVAAS 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
           G  S      +++L    GR E +     G RI +DYAHTS++L+  L +++      + 
Sbjct: 305 G--SGHRDVPIDRLASPRGRMELI-----GDRIIIDYAHTSDALKHALTSLKWHGFPQKT 357

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           ++VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPRSE+PE IR EI+      IE  +
Sbjct: 358 VLVFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPD 417

Query: 445 RIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R +AI  A+    + + VL++AGKGHET   +     +   D   +R  L  +
Sbjct: 418 RGDAIHYAVNFAIRNNYVLLIAGKGHETTQQIAGKSVE-FNDGTAVRRCLSEM 469


>gi|254821906|ref|ZP_05226907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium intracellulare ATCC 13950]
          Length = 514

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 153/496 (30%), Positives = 228/496 (45%), Gaps = 19/496 (3%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            P L   +   P   R      +  V+  ++ ++ G +F A+ G+   G  +   AI +G
Sbjct: 17  LPALAADIGAAPAGDRAVPNLPVTGVTLRAQEVRPGDLFAALPGSTTHGARYAGDAIERG 76

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A A++  +    +     +  + P+LV  + R  L   A+ +YG   E +  + VTGTSG
Sbjct: 77  AVAVLTDAGGVAE--MGALGQSVPVLVHPDPRGVLGGLAATVYGNPSERVTVVGVTGTSG 134

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++   + +G ++  IG     I      + LTTP    L   L+ ++ QGV  
Sbjct: 135 KTTTTYLIESALRAAGHTAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAAMAEQGVDT 194

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH L   R+DG +   G FTNL RDH+D+H T   YF AK  LF+   P  +  
Sbjct: 195 VVMEVSSHALTLGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKAMLFDPSSPLRARR 254

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFL 303
           ++   D  +   M         V + G    +            Q+ T I   G      
Sbjct: 255 VVVCVDDDAGRAMAARAGDAITVSAEGRPAHWRATDVAPMGAAGQRFTAIDPAGARHQLG 314

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG + V N LVA  +  A+G+        L +   VPGR E +    +     VDYA
Sbjct: 315 VRLPGHYNVANCLVALAILDAVGVSPEQASTGLLQAR-VPGRMEEIDA-GQDFLALVDYA 372

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +L  +L  +      R+ VVFG GG+RD GKR  MG  A +LAD+ +VTDDNPR E
Sbjct: 373 HKPGALRAVLTTL-ARPDRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGE 431

Query: 424 DPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET      
Sbjct: 432 DPASIRREILAGATESGCAADIVEIADRRDAIRHAVAWAGPGDVVLIAGKGHETGQS-AG 490

Query: 478 GEKKMSVDCDIIREIL 493
           G  +   D   + + L
Sbjct: 491 GHTRPFDDRVELAQAL 506


>gi|33866222|ref|NP_897781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 8102]
 gi|46576934|sp|Q7U5L3|MURE_SYNPX RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639197|emb|CAE08205.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. WH
           8102]
          Length = 500

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 154/494 (31%), Positives = 245/494 (49%), Gaps = 19/494 (3%)

Query: 14  LINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+  + +  P    + ++  ++SDSR +  G +F+ + G + DG  F  QA+  GA A V
Sbjct: 8   LLRDVGLELPAGLADPQLTSITSDSRLVGEGSLFLGLPGERFDGGRFWRQALEAGAAAAV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  + + +   A    + P+LV+ +   + +   A+  +G       ++ VTGT+GK++ 
Sbjct: 68  IGPSAAQELPPAA---DQPVLVLREPVARSIGELAASYWGHPCRRMALIGVTGTNGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ +  R G  +   G        ++     TT     L   L+  +S G    ++E
Sbjct: 125 THLIEHLAVRVGQPTALFGTLVNRWPGYSITATHTTSVADRLQAQLAEAASAGSQLAAME 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESP-AII 246
            SSH L Q R+ G +     FTNL +DH+DYH T ++Y+ AK RLF   LL  + P A++
Sbjct: 185 VSSHALVQERVAGCRFAGAVFTNLTQDHLDYHGTMESYYEAKARLFTAPLLDGDGPSAVV 244

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD +   + ++      R  S+G     + +  +       +  +        F  PL
Sbjct: 245 NGDDPWGSRLAEQLGGRCWRS-SLGDPQAELQMVDLEMTGQGVRGRLLSPAGSGAFCSPL 303

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDY 362
            G F + N L A G+ +  G+  A +LE +     VPGR E V  N         + VDY
Sbjct: 304 LGRFNLMNLLQAVGVLLQRGLPLAPLLEAVGSFRGVPGRMERVVVNGAESAALPTVLVDY 363

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + LE  L   R  T GR++ VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+
Sbjct: 364 AHTPDGLENALAASRPFTDGRLVCVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRT 423

Query: 423 EDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP++I A+++ G+P   +   + +R  AI  AI   +  D++++AGKGHE   I+   E
Sbjct: 424 EDPDQIIADVVAGMPSGTDLSVERDRATAIAEAIADASAADLVLIAGKGHEDYQILGT-E 482

Query: 480 KKMSVDCDIIREIL 493
           K    D +   + L
Sbjct: 483 KVHFDDREEAEQAL 496


>gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 548

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 146/500 (29%), Positives = 226/500 (45%), Gaps = 28/500 (5%)

Query: 11  FPELINQLSIFPMQWR------ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
             EL   L + P          +  +  V+ DSRH+  G ++ A+ G +  G  F  Q  
Sbjct: 34  LSELRGVLGLPPGAGPADPSGADPAVRGVTLDSRHVLPGDLYAALPGARHHGAQFAGQ-- 91

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
                     ++ +    S       P LVV + R  L   A+ L+     ++    VTG
Sbjct: 92  --------ARASGAAAALSDRPLPGLPTLVVPDPRAVLGPLAAHLHDHPSHHLEVYGVTG 143

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+S    +    + +G  +  I      +    +  + TTP    L + L+ L  QG
Sbjct: 144 TNGKTSTTHLLDAGLRSAGHRTGMISGIRVRTPEWSRPAQRTTPEAPELQETLAALREQG 203

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            T  +VE SSHGL  HR+DG +  A  FTNLGRDH+D H  Q++YF AK  LF     + 
Sbjct: 204 ATSAAVEVSSHGLALHRVDGTRFRAAVFTNLGRDHLDLHGDQESYFAAKASLFAP--HRC 261

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           + A++  DDA+ + +  +         + G +       +V A  ++    +   G D  
Sbjct: 262 ALAVVNVDDAHGRRLAAQVRVPVTTFSAAGRREADWRATEVRADADRTSFRLLGPGTDRR 321

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G  QV NAL A     A G++   VL  +E L  V GR + +    +     VD
Sbjct: 322 VRLHLLGTHQVDNALGAVAALHAGGLNVEDVLRGMEDLTAVSGRLQRID-EGQPFLALVD 380

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH   +   +L  +RT+T GR++VV G  G+RD GKR  +G+ A  L D+ IVTD++P 
Sbjct: 381 YAHNVAAQRRLLPFLRTLTGGRLVVVLGATGERDPGKRGPLGRTAAQLGDVVIVTDESPH 440

Query: 422 SEDPEKIRA-----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            +DP  +R                 + +R  AIR A+ + +  DV+VV+G+GH    +V 
Sbjct: 441 DDDPAALREAVAGGARGAASAQVHVEADRDRAIRLAVSLADPGDVVVVSGRGH-DGQLVA 499

Query: 477 NGEKKMSVDCDIIREILGLI 496
            G  +   D   +R  L  +
Sbjct: 500 GGRTRAFDDGARLRAALAQL 519


>gi|254232316|ref|ZP_04925643.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|294993544|ref|ZP_06799235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 210]
 gi|297731736|ref|ZP_06960854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659071|ref|ZP_07815951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|124601375|gb|EAY60385.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|323719274|gb|EGB28417.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis CDC1551A]
          Length = 521

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 150/471 (31%), Positives = 219/471 (46%), Gaps = 17/471 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 44  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 100

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 101 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 160

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 161 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 220

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M     
Sbjct: 221 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA 280

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V +      +            QQ T I   G        LPG + V N LVA  +
Sbjct: 281 DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAI 340

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L        
Sbjct: 341 LDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVL-TTLAHPD 397

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
            R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G      
Sbjct: 398 RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG 457

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
               +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 458 DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 507


>gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
 gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
          Length = 505

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 132/509 (25%), Positives = 232/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++ K   +LI     +     + +I+ V+  S+ +  G++F A+ G + DGH FI 
Sbjct: 4   KLNDVLLKLDQDLIK----YVKGSLDLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI  G+  IV S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  MAIQNGSNVIVHSRDMDF------YSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +   GV +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSNMVKNGVQYAILESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS E       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDFYSSEFKNAVKKSF--TYSLKSSQADFFVSFINEKIDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   +  D   +++ L  +  + GR + + 
Sbjct: 292 EFYYKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+I+   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +         +R +AI  AI +    D++VV
Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVV 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I+    +    + ++++  +
Sbjct: 471 LGKGHESS-IIYKNREVFWNEQEVVKNAI 498


>gi|297634747|ref|ZP_06952527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|306776408|ref|ZP_07414745.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|306789299|ref|ZP_07427621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|307080227|ref|ZP_07489397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
 gi|308370928|ref|ZP_07667049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308373338|ref|ZP_07667556.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308374507|ref|ZP_07436318.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308215196|gb|EFO74595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|308330355|gb|EFP19206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308334189|gb|EFP23040.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|308338021|gb|EFP26872.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308341706|gb|EFP30557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308361978|gb|EFP50829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
          Length = 517

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 150/471 (31%), Positives = 219/471 (46%), Gaps = 17/471 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 40  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 97  GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 156

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 157 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 216

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M     
Sbjct: 217 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA 276

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V +      +            QQ T I   G        LPG + V N LVA  +
Sbjct: 277 DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAI 336

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L        
Sbjct: 337 LDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVL-TTLAHPD 393

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
            R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G      
Sbjct: 394 RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG 453

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
               +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 454 DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 503


>gi|215403433|ref|ZP_03415614.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 517

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 150/471 (31%), Positives = 219/471 (46%), Gaps = 17/471 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 40  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 97  GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 156

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 157 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 216

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M     
Sbjct: 217 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA 276

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V +      +            QQ T I   G        LPG + V N LVA  +
Sbjct: 277 DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAI 336

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L        
Sbjct: 337 LDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVL-TTLAHPD 393

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
            R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G      
Sbjct: 394 RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG 453

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
               +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 454 DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 503


>gi|51246753|ref|YP_066637.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Desulfotalea psychrophila LSv54]
 gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein
           [Desulfotalea psychrophila LSv54]
          Length = 1014

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 243/504 (48%), Gaps = 42/504 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +V++DSR + +G +F+A  G  +DGH ++  A+ +G   ++V +    Q+  A   + 
Sbjct: 40  VADVTADSRQVASGSLFIARRGGIQDGHAYVEDALLRGCPVVIVEAGSVSQNAYAHCPA- 98

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++ V +++       +  +    E +  + +TGT+GK++++  ++ +  R G     I
Sbjct: 99  -LVIEVADSQAAYGKILANYFANPAEKLSLVGITGTNGKTTISYLLEDMLTRLGHQVGVI 157

Query: 148 GPTSTI------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           G  +        S       LTTP    + + L  ++  GV  V +E SSH + Q R+  
Sbjct: 158 GTVNNRFYRADGSQEIIATSLTTPDAKIVQQLLRRMADAGVDTVIMEVSSHAISQARIGA 217

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EVMKRA 260
           ++     FTNL RDH+DYH   + YF+AK+ LF   L ++  A+I +D    + E ++R 
Sbjct: 218 LRFDLAIFTNLSRDHLDYHLQMEDYFSAKLGLFSRYLKEDGIAVIPSDSRQLQTEFLQRL 277

Query: 261 HNAGC---RVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           H       R LS G +       H  +V        V ++   +  +F   L G F + N
Sbjct: 278 HRQLAGRNRFLSWGEEVGSDVQLHHYRVGLTETDCAVRLADCQQMLEFQSGLVGRFNIDN 337

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNSLE 370
            L     C A+ I    + E++ +L   PGR E V            ++VDYAHT ++L+
Sbjct: 338 LLAVIAACRALAISGQDIAENIGRLQGAPGRVERVFATETPANAQPVVFVDYAHTPDALD 397

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L  +  +  G +I VFGCGGDRD+GKRP+MG +A  LAD+ IV DDNPR+E  E I A
Sbjct: 398 KLLSTLGDVPHGDLIAVFGCGGDRDKGKRPLMGAVAARLADVVIVADDNPRTEASEPILA 457

Query: 431 EIIHGIP--------------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           EI+ G+                     G +  G+R  AI  A+ M   +D++ +AGKGHE
Sbjct: 458 EIVVGVAEQAMPLRNPDWLFERKANERGCVVVGDRRRAIDLAVHMACSKDIIAIAGKGHE 517

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
              +   G KK   D       L 
Sbjct: 518 PYQLGATG-KKFFDDRLQAGRALA 540



 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 157/450 (34%), Gaps = 31/450 (6%)

Query: 32   EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            EV++DSR +  G IFVA+ G   DGH ++ Q +A GA  +VV  A              P
Sbjct: 567  EVTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAAGAACLVVEKARP--------DLTCP 618

Query: 92   ILVVDNTRKFLSLFASR----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++V +TR+ L   A+       G     ++ +TG+SGK+++      I       +   
Sbjct: 619  QVLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGKTTIKEMTASILASL-WPAGAE 677

Query: 148  GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             P + +     +       P+ L   L   +      + +  +S G      +  +    
Sbjct: 678  YPENVVLKTEGNFNNLIGLPLSL---LPLDNMHRAAVLEMGMNSPGEIARLAEIAQPDIC 734

Query: 208  SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCR 266
               N+   H+    + +    AK  LF    P +S  ++  DD +  E+ K       C 
Sbjct: 735  CVANVHAAHLSGLGSIEGVARAKEELFAH-APVDSILVVNLDDPHVVEMAKGYEQKKICY 793

Query: 267  VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             LS                       + +  +         GE  V NAL AAG+ +A G
Sbjct: 794  SLSAAGSADIWASDLSSGEAGSIDFNLHLGAESTSVQLDTLGEHNVSNALAAAGIALAAG 853

Query: 327  IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                 +   L        R E + T+     I   Y     S+   L+ + T+   + I 
Sbjct: 854  ASPQQIALGLGSYKTPSKRLERIRTSCNWTIISDCYNANPASMSAGLRTLATVAGEKKIA 913

Query: 387  V----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            +       G   ++  R I         D  ++  +         + + +  G    +  
Sbjct: 914  IVGDMLELGEFAEEAHRQIGSLAGELSLDYLLIVGEFASFLQQAALNSGM--GKEQVLVF 971

Query: 443  GNRIEAI------RTAIEMLNKQDVLVVAG 466
             +  EAI        A   L ++D++ + G
Sbjct: 972  PS-KEAIIDWLQAYQADGGLGEKDIVFIKG 1000


>gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
 gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
          Length = 505

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 132/509 (25%), Positives = 232/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++ K   +LI     +     + +I+ V+  S+ +  G++F A+ G + DGH FI 
Sbjct: 4   KLNDVLLKLDQDLIK----YVKGSLDLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI  G+  IV S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  MAIQNGSNVIVHSRDMDF------YSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +   GV +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSNMVKNGVQYAILESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS E       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDFYSSEFKNAVKKSF--TYSLKSSQADFFVSFIDEKIDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   +  D   +++ L  +  + GR + + 
Sbjct: 292 EFYYKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+I+   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +         +R +AI  AI +    D++VV
Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVV 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I+    +    + ++++  +
Sbjct: 471 LGKGHESS-IIYKNREVFWNEQEVVKNAI 498


>gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
          Length = 515

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 148/498 (29%), Positives = 229/498 (45%), Gaps = 38/498 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+       +   +  P       I  +  DSR +  G +FVA  G   DGHL+IPQ
Sbjct: 5   LHDLLRT-----LCDPAHLPRA--NPAITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQ 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI +GA A+V        D +   R   P L   N R  L+  A+  YG       ++ +
Sbjct: 58  AIERGAAAVVYE------DPAWDGRIPVPALRTPNARAALAPLAAAFYGYPGRQMRVVGI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQ--DNRLTTPSPIYLAKALSYL 177
           TGT GK++         +  G  +  +G     I+      D+R +TP    +   L  +
Sbjct: 112 TGTDGKTTTTFLTSVALEAGGAVTGLMGTVDFKIAGRLWANDSRQSTPEAPEVQALLRDM 171

Query: 178 SSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              G  +  VEA+SH L    +RL G        TN+ ++H+D+H T + Y   K RLFE
Sbjct: 172 VHAGCAYAVVEATSHALSARWNRLAGCAFDIAVLTNVTQEHLDFHGTVEQYRRDKARLFE 231

Query: 236 EL---------LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            L           +   AI+ ADD   +  +  A     R+    +    +  + V +  
Sbjct: 232 MLAEFHDDATPFKQRKIAIVNADDPNHRMFLDAAPPYAERLTYAIHANADVCARNVRSTR 291

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +     ++      D    L G+F V+NAL A  +  A G+  ++ L  LE++  V GR 
Sbjct: 292 DGLMFRVTTPWGAADAHLRLTGDFNVWNALAALTVACAEGVPLSVCLAALERVPGVRGRM 351

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +    +   + VDYAHT  + E +++ +R +T G++IVVFG  G+RD+ KRP+ G+IA
Sbjct: 352 ERIEM-GQPFTVLVDYAHTPGAFEKLMRIVRPLTDGQLIVVFGSAGERDRAKRPLQGEIA 410

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNK 458
               D+ ++TD++PR ED E I AEI  G+           +   +R  AIRTA      
Sbjct: 411 GRFCDLVVLTDEDPRLEDREAIIAEIAVGVEAAGKRIGETCLCIPDRAHAIRTAFARARP 470

Query: 459 QDVLVVAGKGHETVHIVT 476
            D++++ GKGHE   I  
Sbjct: 471 GDIVLLLGKGHEGSIIYG 488


>gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces avermitilis MA-4680]
 gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Streptomyces avermitilis
           MA-4680]
          Length = 506

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 142/494 (28%), Positives = 226/494 (45%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  Q+     + R+ ++  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A
Sbjct: 17  LAELAGQMGAATPE-RDAEVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++     +         +  P+LVVD+ R  +   A+ +YG    ++L   +TGTSGK++
Sbjct: 76  VLTDPTGA----DRAAATGLPVLVVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  ++   +    +         I      +  TTP    L    + +  +GV  V++E
Sbjct: 132 TAYLIEGGLRTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG       F NL  +H+++H   + YF AK +LF     K     +  
Sbjct: 192 VSSHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFRAKAQLFTPQRSKLGV--VNF 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD Y + +++ A        + G+       + V         T I  + +      PL 
Sbjct: 250 DDEYGRRLVEEAGVPIVTFSAEGHPDADWRAQDVEVGPMDSTFTVIGPKEERITARSPLA 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D     + +  +  VPGR E V    +     VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDV-GQPYLAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T G++ +V GCGGDRD+ KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLRALRKVTEGKLHIVLGCGGDRDRTKRMPMGAAAARLADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                NR  AI   +      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLAGAAEVPSHERGEVQVFENRAAAIAAVVARARPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRLVLREAI 501


>gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
 gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
          Length = 515

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 153/502 (30%), Positives = 241/502 (48%), Gaps = 24/502 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +D   L++  +       +  +  V+ DSR ++ G ++ A+ G++  G  F  Q    GA
Sbjct: 15  RDLALLVSAPADVIDDLDDVAVTGVTLDSRAVRPGDLYAALPGSRAHGADFAAQVADAGA 74

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGK 126
            A++  +    +  +A +  + P++VV+  R  L   A+R+YG       ++ +TGT+GK
Sbjct: 75  AAVLTDADGVERLRAAGV--DLPVIVVEAPRSVLGTIAARIYGTTDLSLTMVGITGTNGK 132

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A  V       G  +  IG   T I      +  TTP    L   L+ +  +     
Sbjct: 133 TTTAYLVASALDALGQRTGLIGTVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTC 192

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L QHR+DG+      FTNL +DH+D+H   + YF+AK +LF     + +  +
Sbjct: 193 VMEVSSHALSQHRVDGVLYDLSLFTNLSQDHLDFHADMEDYFSAKAQLFTP--ERSTRGL 250

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DD + + + +        + ++  Q     +          +  +   G + D    
Sbjct: 251 ICVDDIWGRRLAEECGIPVTTLTTIEGQTADWVV--TVDATEPARFALRGTGIELDLRSA 308

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-----SRGGRIYV 360
           LPG+F V N  +AA   + +G D+  V   +     VPGR E V          G    V
Sbjct: 309 LPGDFNVANTAMAAVALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSGLLAVV 368

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +++E  L  +R  T+GR++VV G GGDRD+GKR  MG+ A  LAD+ +VTDDNP
Sbjct: 369 DYAHTPDAVEAALAALRPTTTGRLVVVLGAGGDRDRGKRHGMGRAAAGLADVVVVTDDNP 428

Query: 421 RSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNK---QDVLVVAGKGHET 471
           RSEDP +IR  ++ G          +E G+R +AIR  + +  +     VL V GKGHET
Sbjct: 429 RSEDPAQIRTAVVEGARSIDTTALLVEVGDRRKAIREGVRLAREGGSGSVLAVVGKGHET 488

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              + N       D D +R  L
Sbjct: 489 GQEI-NEVVHPFDDRDELRAAL 509


>gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 499

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 233/480 (48%), Gaps = 41/480 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +  R   +  ++ D R I+AG +F A+ G   DG  F  +A+ +GA A++ +        
Sbjct: 44  VGDRATSVTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGAVAVLTA-------- 95

Query: 83  SATIRSNTPILVVDN--TRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138
              +    P LVV     R  +   A R++G      +++ VTGT+GK++  S V Q+ +
Sbjct: 96  GQPVAVGVPQLVVPRASLRTAVGRVAHRIFGDPSSAVSVIGVTGTNGKTTTVSVVSQLLE 155

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           R G     +G           +RLTTP    LA+ L+     G   V++E SS  +   R
Sbjct: 156 RLGEGVGVLGTL--------WSRLTTPEAPELARRLAEFRDSGRRWVAMEVSSIAIAMER 207

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++G+ +  G FTNL +DH+D+H + + YF AK RLFE    + +  +I  DD +   +  
Sbjct: 208 IEGLHVRVGVFTNLSQDHLDFHGSMEDYFAAKARLFEP--ERTAIGVINVDDPWGARLAA 265

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                                       +   +     G+   +   L GE  + N L+A
Sbjct: 266 SVRVPVV---------PVSISAVTDIEIDAAGIRFRRNGR--WYRSRLVGEHNLRNILLA 314

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G D  L+   L ++    GR + +      G + VDYAH+ ++L  +L+  R 
Sbjct: 315 VSVLEQVGFDPDLLRGVLGEVESPRGRMQRILGPR--GLVVVDYAHSPDALAAVLRAARL 372

Query: 379 I--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           +    GR++VVFG GG+RDQ KRP+MG +A  LAD+AIVT DNPRSEDP  I A+I+ G 
Sbjct: 373 LVGPRGRLLVVFGAGGERDQAKRPLMGAVAEQLADVAIVTSDNPRSEDPAAIAAQIVAGW 432

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               G     +R  AI  A+ M+   DVLVVAGKGHE V ++ +G      D D++   L
Sbjct: 433 RDRRGVRVVLDRRAAIEEAVAMMAPGDVLVVAGKGHERVQVI-DGVATPFDDIDVVHAAL 491


>gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase
           [Aromatoleum aromaticum EbN1]
 gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase
           [Aromatoleum aromaticum EbN1]
          Length = 502

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 144/476 (30%), Positives = 226/476 (47%), Gaps = 24/476 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++DSR +Q G +F A  G   DG  ++  AI +GA A++   +    D       + 
Sbjct: 21  HGITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAAAVLWDDS----DGMRLEALSV 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P L V   R      A  ++G     +    VTGT+GK++V+ ++       GL    IG
Sbjct: 77  PALPVSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQWLAAALAGLGLRCGVIG 136

Query: 149 PTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                      D+  TTP  + + + L+   ++     ++E SS GLDQ R++G++    
Sbjct: 137 TLGCGFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAMEVSSIGLDQERVNGVEFDVA 196

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH + ++Y  AK RLF+  LP    A+I  DD +     +R   +G  V
Sbjct: 197 VFTNLTRDHLDYHSSMESYAVAKARLFD--LPGIGAAVINFDDDFGLAQARRLAASGMPV 254

Query: 268 LSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +               + +       + +  +  +  +G        +   F V N +  
Sbjct: 255 IGYTRFVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHHTVQVRMVAPFNVSNLMAV 314

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G  +   +    ++  + +L    GR + VG       + +DYAH+ ++L  +L+ +R+
Sbjct: 315 IGSLLVRDVPMDDIVRSVSRLTPPAGRMQLVGGVGE-PLVVIDYAHSPDALAQVLEAVRS 373

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                 GR++ VFGCGGDRD GKRP+MG +A  LAD  IVT DNPRSEDP KI   I+ G
Sbjct: 374 TAQGRGGRLVCVFGCGGDRDAGKRPMMGDVARALADRVIVTSDNPRSEDPLKIIDAIVRG 433

Query: 436 I-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
             P      +R +AIR A+      DV+V+AGKGHE    V  G +    D +  R
Sbjct: 434 AGPNAERIVDRAQAIRIAVGEAGANDVIVLAGKGHEPYQEVL-GVRLPFSDVEQAR 488


>gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te
           ligase mure [Rhodococcus equi 103S]
 gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
           6-diaminopimelate ligase MurE [Rhodococcus equi 103S]
          Length = 501

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 148/511 (28%), Positives = 232/511 (45%), Gaps = 33/511 (6%)

Query: 1   MKLQDLIY----KDFPELINQLSIFPMQWRE------RKINEVSSDSRHIQAGWIFVAIV 50
           M L+DL      +   E++++L        +      R I  V  DSR ++ G ++ A+ 
Sbjct: 1   MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALP 60

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G +  G  F  +A A+GA A++      +           P +VVD+ R  L   A+  Y
Sbjct: 61  GRRHHGADFASEASARGAVAMLSDRPSDI----------VPTVVVDDPRVALGPLAAWAY 110

Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRLTTPSP 167
           G      ++  VTGT+GK+S    ++     +GL +  + G T      A+    TTP  
Sbjct: 111 GNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTARPATRTTPEA 170

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             L ++      +GV  V++E SSHGL +HR+DG +   G FTNL RDH+DYH   +AY+
Sbjct: 171 CELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYY 230

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK RLF   L +   A +  DD Y + +            S    G  ++   V A   
Sbjct: 231 TAKARLFGRDLCER--AAVCIDDDYGRRLAGEVAVPHL-TFSARDPGADVYATTVRAQRW 287

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+   G+       + G  QV NA+ A       GID    +  +E L  +PGR E
Sbjct: 288 GSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE 347

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V    +     VDY H +     +   +R++T GRI+VV G  G+RD GKR  +G  A 
Sbjct: 348 RVDV-GQPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLGFTAA 406

Query: 408 DLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             A++ +VTD++  S+D   +R          G    +   +R EAI  A+++    D +
Sbjct: 407 RYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTV 466

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AG+GH+   +V +G      D   +R  L
Sbjct: 467 LLAGRGHDPA-LVDDGVATAFDDRAALRNAL 496


>gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
 gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
          Length = 532

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 150/481 (31%), Positives = 233/481 (48%), Gaps = 24/481 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  +S DS+ I+ G +++A  G    G  F P A+A GA A+V  +A +        
Sbjct: 38  DTTVTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAAMLDGLA- 96

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
               P+LV ++ R      ++ +YG+    +     TGT+GK++ +  +    +R+GL +
Sbjct: 97  ---VPVLVAEDVRGLAGRLSAFVYGEPATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKT 153

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     I      +  TTP    L   L+    + V  +++E SSH L   R  GI+
Sbjct: 154 GVIGTVQILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGRTAGIR 213

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A +F NL +DH+D+H   + YF AK +LF     + +   +  DD + + V++R    
Sbjct: 214 FKAAAFLNLTQDHLDFHADFEDYFEAKAKLFTPGYTERAVVDV--DDEHGRRVVERCRAN 271

Query: 264 GCRVLSVGYQG--KFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAG 320
           G +V +   +G       + +    +    T++  +G+       LPG+F V NAL A  
Sbjct: 272 GVQVHTFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASAGLPGDFNVANALAAIV 331

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L    GID    +  +  +H VPGR E +    +     VDYAHT +++   L  +R + 
Sbjct: 332 LLAVTGIDLETAIAGVADVHGVPGRMERIQVPGQQFLAVVDYAHTPDAVLTALSALRPVA 391

Query: 381 S---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               GR+ VV GCGGDRD+ KRP+MG  A+ LAD A+ TDDNPR+E    I A +  G  
Sbjct: 392 ERGRGRLRVVVGCGGDRDKTKRPLMGAAAVRLADEAVFTDDNPRTESSADILAAVTAGAD 451

Query: 437 -------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                    +    +R EAIR A+      DVL+VAGKGHE    +  G KK   D  ++
Sbjct: 452 AELAGAEKNYRVVADRAEAIRRAVAASGPGDVLIVAGKGHEQGQEIA-GVKKPFDDRVVL 510

Query: 490 R 490
           R
Sbjct: 511 R 511


>gi|183221146|ref|YP_001839142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911237|ref|YP_001962792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775913|gb|ABZ94214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779568|gb|ABZ97866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 508

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 152/519 (29%), Positives = 246/519 (47%), Gaps = 39/519 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL-- 58
           MKL ++I K  PEL            +  +  + +DSR ++   +FV +    ED     
Sbjct: 1   MKLTEIIKK-IPEL-----KLIKGDGDLDVGYIWADSRKLKPNDVFV-LP---EDKAETI 50

Query: 59  --FIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHP 114
             ++  A  +G + ++VS     L++          IL  ++         AS+L G   
Sbjct: 51  ESYLQMAYDKGVKVVLVSKRNLKLKNLDLFP----TILESEDALGDVHGKMASQLLGNPS 106

Query: 115 ENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171
           + +  + +TGT+GK+S+   +  I ++       IG     I     ++  TTP    L 
Sbjct: 107 KKLKIIGITGTNGKTSLTFILFHIAKKLKKKVALIGTVQIQILDRILESGYTTPDASSLN 166

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L  +  +GV +V +E SSHGL   R+ GI++    FTNL +DH+D+H++ + YF +K 
Sbjct: 167 LLLREMLDEGVEYVFMEISSHGLKLGRVAGIEITCAGFTNLTQDHLDFHESMEDYFESKF 226

Query: 232 RLF---EELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIH 286
           ++F   E+   K    ++  D ++   +++R   +  +     +G  G+F +        
Sbjct: 227 KIFQLLEQSSVKNKFGLVAGDVSFGDRMIQRIRESKLKTPIYILGKSGEFHY-SNTKLSL 285

Query: 287 NKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              +     + K+  F         L G F V+N   A  +   +G     V+  +E++ 
Sbjct: 286 LGSEYRFHKKEKNLPFIEVRSIRTNLLGNFNVFNTAFAMSIAYELGFPWDEVVTAIEEIP 345

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGRF+ +    +     VDYAHT ++LE ILK+   I   ++I +FGCGGDRD+ KRP
Sbjct: 346 TVPGRFQVIPYPDKTRIAVVDYAHTPDALENILKSCVEIRPKQLICLFGCGGDRDRTKRP 405

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEML 456
            M KIA  LAD   +T DNPR+EDPE I  EI      G   + +  +R  AI+ A+ +L
Sbjct: 406 QMAKIAETLADFVFLTSDNPRTEDPESILDEIESGFSRGFKRYEKITDRRVAIQRAVSLL 465

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            K  +LVVAGKGHET  I+   +       +I    L L
Sbjct: 466 EKDGILVVAGKGHETYQIIGKEKTNFVDFLEIENAFLNL 504


>gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
 gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
          Length = 520

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 154/482 (31%), Positives = 224/482 (46%), Gaps = 35/482 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A   +  D   FI  AI +GA A++V          A++    P
Sbjct: 30  HLHADTRSLAAGDAFFAYAVDGADNRAFIDAAIERGAAAVLVQPEGFTGKLDASVTHAVP 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L      +     AS  Y    + +LA  +TGT+GK+S + +V       G     +G 
Sbjct: 90  AL-----NELAGTIASAWYRDPSDAMLAVGITGTNGKTSCSQWVAAALSARGTRCAIVGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T           TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGFVGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T +AY  AK RLF    P+   A+I  DDA  + ++  +     R +
Sbjct: 205 FTNLTQDHLDYHGTFEAYETAKARLFA--WPELRAAVINRDDAAGRRLLA-STRGHARTI 261

Query: 269 SVGYQG--------------KFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVY 313
           + G +G               ++    V A        +S  +  + D      G F V 
Sbjct: 262 AYGIEGEHGDADAKGAHQADAWLAASNVRATATGTAFHLSTSDWGNADVEVQTLGLFNVS 321

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEM 371
           N L   G+ +A  +     L  L KL  V GR + +G    +    + +DYAHT ++LE 
Sbjct: 322 NLLAVLGVLLAADVPFGAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 381

Query: 372 ILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L+ +R I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP  I
Sbjct: 382 TLEALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSEDPLSI 441

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D
Sbjct: 442 IEQIAAGMQDASKARRVEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSD 500

Query: 486 CD 487
            D
Sbjct: 501 QD 502


>gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306937|pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306938|pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306939|pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis
 gi|303324784|pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324785|pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324786|pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324787|pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
          Length = 535

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 149/471 (31%), Positives = 218/471 (46%), Gaps = 17/471 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 58  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 114

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 115 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 175 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 234

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G+FTNL RDH+D+H +   YF A   LF+      +   +   D  +   M     
Sbjct: 235 RFAVGAFTNLSRDHLDFHPSMADYFEAXASLFDPDSALRARTAVVCIDDDAGRAMAARAA 294

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V +      +            QQ T I   G        LPG + V N LVA  +
Sbjct: 295 DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAI 354

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L        
Sbjct: 355 LDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVL-TTLAHPD 411

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
            R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G      
Sbjct: 412 RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG 471

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
               +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 472 DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 521


>gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
 gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
          Length = 506

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 146/508 (28%), Positives = 227/508 (44%), Gaps = 34/508 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           P  + +++ F  + +      +S+   DSR +    +F A  G+  DG  F+ +A  QGA
Sbjct: 7   PRTLQEVAAFLEEDKNVGTCSLSTLEEDSREVLKNSLFYAHKGHTVDGFDFMLKAQEQGA 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENI--LAVTGTS 124
            AI+       +D SA    +  I ++   +K +    FAS  Y      +  + +TGT+
Sbjct: 67  AAIICDYD---KDPSAEQLKDVTIPLLH-LKKGMSVGEFASWFYFSPSSKLRLIGITGTN 122

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP---SPIYLAKALSYLSSQG 181
           GKS+V   + Q            G       F  + + ++    S I L KAL+    +G
Sbjct: 123 GKSTVTQLIAQYLALFNRKCAVFGTLG--YGFLPNLKQSSNTTLSAIALQKALAEAVKEG 180

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + ++E SS G+ + R+DG     G+FTNL RDH+DYH+T + Y  AK      + P  
Sbjct: 181 ADYAALEVSSIGVCEGRIDGCIFSGGAFTNLTRDHLDYHKTMENYAKAKREFLNRVNPD- 239

Query: 242 SPAIIYADDAYSKEVMKRAHNAG---------CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +  DDA  K V      A                  +   +++  +   H+  ++ 
Sbjct: 240 -HLCLNVDDAMGKTVATLKPEAILFSPKGALAVNSPDKSVKHALLNVTGIEYKHDGLKLR 298

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I       D    L G F   N L A  + ++       +L+   +L  + GR E     
Sbjct: 299 IDSSFGKGDASLSLLGSFNAENFLCALSVLLSFHFPLKDLLDKASQLKPICGRMECFYKE 358

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +  R+ VDYAHT + +E  LK  R+ T G ++  V GCGGDRD+GKRP+M   A   AD
Sbjct: 359 GK-PRMIVDYAHTPDGVESALKAARSHTPGGKVWCVLGCGGDRDKGKRPMMAIKACVYAD 417

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             I T DNPR+EDP +I  ++  G+ G    +     R +AI  A +     D +VVAGK
Sbjct: 418 KVIFTSDNPRTEDPVRILEDMESGVKGSADNYECIVKREDAITKAFKEAQSADCVVVAGK 477

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGL 495
           GHE   I+    K    D + +  +L L
Sbjct: 478 GHEDYQIIGK-VKHHYSDREFVMSLLDL 504


>gi|332976674|gb|EGK13514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 153/550 (27%), Positives = 248/550 (45%), Gaps = 66/550 (12%)

Query: 7   IYKDFPELINQLS-IFPMQWRERKINEVSSDSRH----------IQAGWIFVAIVGNK-- 53
             K  PE    L  I      +   ++   DSR           + A   FV +  +   
Sbjct: 25  ALKVLPEQAQTLQQILSQPGIDIAFSKFVLDSRQLDNEVNTAPSVAAPAAFVLLKSHTQP 84

Query: 54  -EDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLSLF------ 105
            E    +   A  + A  I+       L   + T     PI+ V N R  L         
Sbjct: 85  IEKSQQYAQVAAEK-AAFILTEIDPQHLASSTQTAEYACPIIFVANLRDILGSLIQISLL 143

Query: 106 ----------ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTIS 154
                     +S L  + P+ ++AVTGT+GK++++  + Q+CQ S ++         T  
Sbjct: 144 PPASLSSLTHSSDLQQQLPQ-VIAVTGTNGKTTISQLIAQLCQFSNVAQLQNSAVMGTAG 202

Query: 155 SFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +   D+      TT   + + + L  +  +GV+ +++EASSHGLDQ RL  + +    +T
Sbjct: 203 NGRLDSLVQASHTTGDALAVQRFLRQMHDEGVSILALEASSHGLDQQRLQAVLVTVAVYT 262

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           NL RDH+DYH   + Y  AK RLF+    P+ + A+I ADD ++  + + A  +G +V  
Sbjct: 263 NLSRDHLDYHPDMEDYARAKARLFDTAYFPQLTHAVINADDEFASLMAETARRSGAKVWL 322

Query: 270 VGY-----------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                            +    K+       ++ +           PL G F V N L A
Sbjct: 323 YSLRSEQGTINEIANDAYFVANKIEPSLEGVKIEVETSFGPLILHSPLLGRFNVANLLAA 382

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----------RGGRIYVDYAHTSNS 368
               +A+GI+   +   + KL    GR + V  N+            G   VDYAHT ++
Sbjct: 383 VAGVMALGIELEDLPALVTKLQGASGRMQRVNVNNDAIDDQGTVLNQGVFIVDYAHTPDA 442

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +L ++++  SG +  +FGCGGDRD+GKRP+M +  L +AD  ++T DNPRSEDP +I
Sbjct: 443 LTQVLTSLKSHCSGNLWAIFGCGGDRDKGKRPLMAQAGLAVADKVVLTSDNPRSEDPAQI 502

Query: 429 RAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             ++  G+            +R +AI+ A+E    QD++V+AGKGHET   +  G +   
Sbjct: 503 LEDMQQGMSDEQHQKTKVIADRKQAIQYAVEHAGPQDIVVIAGKGHETYQEIK-GVRYDF 561

Query: 484 VDCDIIREIL 493
            D ++++  L
Sbjct: 562 DDREVLQHAL 571


>gi|328675662|gb|AEB28337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella cf. novicida 3523]
          Length = 475

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 142/491 (28%), Positives = 241/491 (49%), Gaps = 23/491 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  +++  L I  +     +I  +S DSR     W FVA+ G   DG+ +I   +A+  
Sbjct: 2   KNINQILKFLDIQTLSQNNFQIESLSLDSRKCDDKWAFVALKGQLTDGNKYIDSVLAKDI 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++          S        I  + N ++ LS  A   Y  K P+NI+ +TGT+GK+
Sbjct: 62  SLVLTD--------SHEFEDQKRIFYIQNLKEKLSALAKWFYDYKKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY   +   ++ 
Sbjct: 114 SISSYIAQFLDLSSQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISY--HKNYQNLV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R +G+      F+NL  DH+DYH++   YF AK +LF+        AII
Sbjct: 172 MEVSSHSLDQKRTEGLDFDVAVFSNLSHDHLDYHKSMDNYFEAKAKLFQ--FKSLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y + +           +S+  +   +++K       K +  +   G+   ++   
Sbjct: 230 NIDDEYGQRL-CNITKVPIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N  ++      + +D   +L+ L  +  V GR E +       +I +DYAHT
Sbjct: 289 LIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKSVKGRMEVIEL-DNDIKIVIDYAHT 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE  L+ +       +  +FGCGG+RD  KRPIM +IA + A   +VT+DN R E+ 
Sbjct: 346 PDALEKALQTLANYNPNNLWCIFGCGGNRDTTKRPIMAQIAEEYASKIVVTEDNNRFENI 405

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I ++I  G           +R +AIR +IE  N+ D++++AGKGHE   +  NG K+ 
Sbjct: 406 ENIFSDIKKGFKYPQKHTFITSREQAIRFSIENANQGDIILLAGKGHECY-LDKNGIKEY 464

Query: 483 SVDCDIIREIL 493
             + +II+ +L
Sbjct: 465 FDEREIIKNML 475


>gi|326333497|ref|ZP_08199738.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325948697|gb|EGD40796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 512

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 153/513 (29%), Positives = 226/513 (44%), Gaps = 57/513 (11%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK----------------- 53
             EL  +  +      E ++  VS  S+ +  G ++ A+ G++                 
Sbjct: 24  LAELAGEFGLDVRG--EARVTGVSLSSQRVLPGDLYAALPGSRAHGAGYAAGAVEAGAVA 81

Query: 54  --EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
              D         A GA               +      P+L+V+  RK L   ++R+YG
Sbjct: 82  VLTD---------AAGAAL-----------LESQGLGEVPVLLVEQPRKVLGALSARVYG 121

Query: 112 KHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPI 168
                +  + VTGT GK++     +     SG  +  IG   T I        LTTP   
Sbjct: 122 NPSGRLRLIGVTGTQGKTTTTRLAESALLDSGHRAGVIGTVGTRIGGRDVKTPLTTPEAP 181

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L    + +  +G    ++E SSH L   R+DG+      F NLGRDH+D+H+T + Y+ 
Sbjct: 182 DLHGLFARMVEEGTEACAMEVSSHALVMGRVDGVVFDVAVFLNLGRDHLDFHETVEDYYA 241

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  LF     +     +  DD + + +   A        ++           +    + 
Sbjct: 242 AKADLFTPERAELGI--VNIDDEHGRRLAAEA-TIPILTYALHDDTADWRATDIELRPDG 298

Query: 289 QQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE---HLEKLHVVPG 344
              T+   +G  F    PL G++ V N L A         D  +V +    L K   VPG
Sbjct: 299 SSFTVHGPDGLSFPAASPLAGDYNVSNTLAALASIHHAYGDETVVRDVATALAKGSGVPG 358

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +    +   + VDYAH  +++E  L  +R +T  R+IVV G GGDRD GKRPIMG+
Sbjct: 359 RLERID-EGQPFTVVVDYAHKPDAVEAALGTLRPLTESRLIVVIGAGGDRDTGKRPIMGE 417

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460
           I+  LAD  IVTDDNPR+EDP  IR +++ G  G      E G+R  AI  AI +    D
Sbjct: 418 ISARLADHVIVTDDNPRTEDPASIRRQVLAGTTGGSASVEEIGDRRAAIERAIGLAQPGD 477

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++VVAGKGHET   + NG      D  ++RE L
Sbjct: 478 IVVVAGKGHETGQEI-NGVTHPFDDRQVVREAL 509


>gi|209519090|ref|ZP_03267896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
 gi|209500462|gb|EEA00512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
          Length = 520

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 222/482 (46%), Gaps = 35/482 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A      D   FI  AI +GA A++V          A++    P
Sbjct: 30  HLHADTRSLAAGDAFFAYAVEGADNRPFIDAAIERGAAAVLVQPEGFGGTLDASVAHAVP 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L      +     AS  Y    + +L   +TGT+GK+S + +V       G     +G 
Sbjct: 90  AL-----NELAGTIASAWYRDPSDAMLTVGITGTNGKTSCSQWVAAALSALGTRCAIVGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGLVGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T  AY  AK RLF    P+   A+I  DDA  + ++   H    R +
Sbjct: 205 FTNLTQDHLDYHGTFAAYETAKTRLFA--WPELRAAVINRDDAAGRRLLASTHG-HARTI 261

Query: 269 SVGYQG--------------KFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVY 313
           + G +G               ++    V A        ++  +    +      G F V 
Sbjct: 262 AYGIEGGQGDAHAKGAPQADAWLTASNVRATATGTAFHLNTSDWGHAEVEVQTLGLFNVS 321

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEM 371
           N L   G+ +A  +     L  L KL  V GR E +G    +    + +DYAHT ++LE 
Sbjct: 322 NLLAVLGVLLAADVPFDAALAELAKLESVNGRMERLGGRLQNDEPLVVIDYAHTPDALEK 381

Query: 372 ILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L+ +R I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P  I
Sbjct: 382 TLEALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSENPLAI 441

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D
Sbjct: 442 IEQIVAGMQDASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSD 500

Query: 486 CD 487
            D
Sbjct: 501 QD 502


>gi|296166028|ref|ZP_06848478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898618|gb|EFG78174.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 516

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 157/490 (32%), Positives = 233/490 (47%), Gaps = 20/490 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+       +  +  V+  ++ ++ G +F A+ G+   G  +  +AI +GA A++  +A 
Sbjct: 26  LADRAAAVPDVAVTGVTLRAQDVRPGDLFAALPGSSTHGARYAAEAIERGAVAVLTDAAG 85

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQ 135
             +  ++   S  P LV    R  L   A+ +YG   E   ++ +TGTSGK++    V+ 
Sbjct: 86  VAEMGASA--SAVPTLVHPAPRGVLGALAATVYGNPSERTTVIGITGTSGKTTTTYLVEA 143

Query: 136 ICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             + +G ++  IG     I      + LTTP    L    + ++ +GV  V +E SSH L
Sbjct: 144 GLRAAGRTAGLIGTVGIRIDGADVPSALTTPEAPALQALFAAMAERGVDTVVMEVSSHAL 203

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYS 253
              R+DG     G+FTNL RDH+D+H T   YF AK +LF+   P +    ++  DD   
Sbjct: 204 ALGRVDGTGFAVGAFTNLSRDHLDFHPTMADYFEAKAKLFDPASPLRARRVVVCVDDEAG 263

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVT-ISVEGKDFDFLFPLPGE 309
           + +  RA   G   ++V    +  H + +  I      QQ T I   G        LPG 
Sbjct: 264 RAMAMRAMQGGAAAITVSAADQPAHWRAMDVIPLGTGGQQFTAIDPAGVRHRVGIRLPGH 323

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + V N LVA  +  A+G+        L     VPGR E +    +     VDYAH   +L
Sbjct: 324 YNVANCLVALAILDAVGVSPEQAAPGLLD-TRVPGRMEEIDC-GQDFLALVDYAHKPGAL 381

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L         R+ VVFG GG+RD GKR  MG  A +LAD+ +VTDDNPR EDP  IR
Sbjct: 382 RAVL-TSLARPGRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGEDPAAIR 440

Query: 430 AEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            EI+       G    +E G+R  AI  A+      DV++VAGKGHET      GE +  
Sbjct: 441 REILAGAAAGGGAAEVVEIGDRRAAIEHAVAWARPGDVVLVAGKGHETGQ-RAAGEVRPF 499

Query: 484 VDCDIIREIL 493
            D   + + L
Sbjct: 500 DDRLELADAL 509


>gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 479

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 184/482 (38%), Positives = 255/482 (52%), Gaps = 12/482 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   L           +  ++ D R +  G +F A VG + +G  FIP A+         
Sbjct: 3   LAALLDDADWAGPNPVVTGLAIDHRKVAPGTLFGAFVGERFNGEDFIPDAV--------A 54

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           + A ++             +   N R+  +  A+R + + P   +AVTGT+GK+S     
Sbjct: 55  AGAVAVVARPDAKVDGAVHVADANPRRAFAHIAARFFHRFPATCVAVTGTNGKTSTVEMT 114

Query: 134 QQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +Q+ + +G ++  IG    T S  +    LTTP  +     +S L+ +GVTH + EASSH
Sbjct: 115 RQLWRMAGFNAASIGTLGITTSVDSASTGLTTPDIVTFLSNMSGLAVEGVTHAAFEASSH 174

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ+R +G+ + A +FTNL  DH+DYH T +AY  AKMRLF E++     AI++ADDA+
Sbjct: 175 GLDQYRTEGLPVKAAAFTNLSHDHLDYHGTMEAYLAAKMRLFREVVQPGGAAIVWADDAH 234

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S  V++ A     RVL+VG  G+ + L         Q + I+          PL G +Q 
Sbjct: 235 SAAVIEAARARDVRVLTVGQAGEALRLVSRTPTQLGQLLVIAAGDVTHKVTLPLIGAYQA 294

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NALVAAGL IA G D AL L +L +L  V GR E       G  IYVDYAHT +++E  
Sbjct: 295 ANALVAAGLVIATGGDVALTLANLARLQPVRGRLERAAIARSGAPIYVDYAHTPDAIEAA 354

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +R   +GR+I+VFG GGDRDQ KRP MG++A   AD+ I+TDDNPR EDP  IR  I
Sbjct: 355 LDALRPHATGRLILVFGAGGDRDQAKRPEMGRVAAAKADLLIITDDNPRGEDPAVIRDAI 414

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVDCDII 489
               PG    G+R  AI  AI      D++ +AGKGHE   IV  G+        D  + 
Sbjct: 415 AAAAPGAQVIGDRRAAIAAAIAAARADDIICIAGKGHEQGQIVGRGDDMRVIPFDDVSVA 474

Query: 490 RE 491
           RE
Sbjct: 475 RE 476


>gi|124023806|ref|YP_001018113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964092|gb|ABM78848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9303]
          Length = 538

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 143/477 (29%), Positives = 221/477 (46%), Gaps = 19/477 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR +  G +F+ + G + DG  F  QA+A    A       +          +  +
Sbjct: 59  VSCDSRAVARGCLFLGLPGEQVDGGSFWRQALAA--GAEAAVIGPAAAALRPPGPKDAVV 116

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +V +    ++   A+  + +    +  + VTGT+GK++    ++ +    G S+   G  
Sbjct: 117 VVSEPVAAWVGQLAAAFWQQPSSRLALIGVTGTNGKTTTTHLIEHLSVAVGRSTALFGTL 176

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +++     TT     L   L+     G    ++E SSH L+Q R+ G +     F
Sbjct: 177 VNRWPNYSVPATHTTAFADRLQAQLAQAVEAGAELGAMEVSSHALEQQRVAGCRFAGAVF 236

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--PAIIYADDAYSKEVMKRAHNAGCRV 267
           TNL +DH+DYH + +AYF AK +LF   L +     A++  D  +   + +R  +   R 
Sbjct: 237 TNLTQDHLDYHSSMEAYFEAKAQLFAPPLLESGSAKAVVNIDGPWGARLAQRLGDTCWRS 296

Query: 268 -LSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            L+ G        + + ++       Q  +     +  F  PL G F + N L A G+ +
Sbjct: 297 SLAEGVLQRADAELTMTELTMSSAGVQGRLISPCGEGWFDSPLLGRFNLMNLLQAVGVLL 356

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTN----SRGGRIYVDYAHTSNSLEMILKNIRTI 379
             G+   L+L+ +     VPGR E V       S+   + VDYAHT + LE  L   R  
Sbjct: 357 QQGLPLPLLLKAIADFRGVPGRMERVLIPAADASQVPTVLVDYAHTPDGLENALTASRPF 416

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
           TS  +  VFGCGGDRD+GKR  M  IA  LAD  +VT DNPR+EDP++I  +++ GIP  
Sbjct: 417 TSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVTSDNPRTEDPQQILVDVVAGIPQG 476

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                + +R  AI  AI      DV++VAGKGHE   I+    K    D +     L
Sbjct: 477 TALTVEVDRAVAIALAIAEAGPGDVVLVAGKGHEDYQILGT-SKVHFDDREEAERAL 532


>gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 476

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 35/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL DL+ K     I  L +      + K+  V+++S  +  G+IFVA+ G+  DGH +I
Sbjct: 2   IKLSDLVRK-----IEYLDV--KHGADFKVRAVTNNSLKVGEGFIFVAVKGSIFDGHKYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI +GA+A+V +            R +   + V + R+ L+  ++ +     E +  +
Sbjct: 55  DEAIKKGAKAVVHTEDVE-------YREDITYIRVFDPRQTLAEISNLITDFPSEKLSVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ +  +  + ++       IG     +     +   TTP    + + L   
Sbjct: 108 GVTGTNGKTTTSKLIAYLIEKVFGPCANIGTDGANVGGEIIETSNTTPDITEINRILEKC 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G+ +V++EASSHGL Q RL G++   G F NL  +H+DYH+T  AYF AKM LFE  
Sbjct: 168 VEKGIKYVTLEASSHGLVQKRLAGVRFKVGIFNNLSTEHLDYHKTMDAYFKAKMILFEN- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I   DD +     K+A       LS G   K   ++        + ++  ++G
Sbjct: 227 ---SEITIANIDDPWG----KKAVELFPTTLSFGKDEKAN-IRATDISKTDKGISFKIDG 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            DF        +F++ N L A     ++G     + E +     V  RFE++  N +G  
Sbjct: 279 VDFFIRT--IADFELNNYLAAISTLKSLGASLTELSEVITDFPGVGSRFEYI-ENDKGLN 335

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VD+AHT  + E I K++      + I VFG  GDR+   R ++GK   D    AIVT 
Sbjct: 336 IIVDFAHTPRAFEEIFKSLP--RDKKKIAVFGIQGDRNPEFRNLIGKTVSDYGIYAIVTT 393

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P+ +  E I  +I+ G+      +    +R EAI   + M    D ++  GKG E   
Sbjct: 394 DDPKFDTYENISKDIVAGMAENYGAYTLIKDRKEAIEAGLRMAKPGDYVLFMGKGEENFI 453

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
            +   EK    +   IRE L  I
Sbjct: 454 KLHGNEKTPWNEKATIRETLEKI 476


>gi|167564204|ref|ZP_02357120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis EO147]
          Length = 514

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 154/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG  F+A   +  D   FI  A+A+GA A++     S  D      S   
Sbjct: 30  QLHADTRSLQAGDAFIAYAVDGADNRPFIADALARGAAAVLYQPEGSAADGLEPATS--- 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 87  -LAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIAAALTALHQPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTLEAYEAAKTKLFA--WRGLRLAVVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIH--------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G   +             KV A        ++    D D      G F V N L   G
Sbjct: 263 AYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  +EKL  V GR E +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAAIEKLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I  G
Sbjct: 383 IARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIAAG 442

Query: 436 IPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    +     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|38234178|ref|NP_939945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200440|emb|CAE50128.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           diphtheriae]
          Length = 513

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 158/502 (31%), Positives = 241/502 (48%), Gaps = 21/502 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +   EL     +        +I+ +  DS  + A  IF A+ G K  G  +  Q  A 
Sbjct: 10  TLERLTELAGGRLVGETTAGATEISAIGLDSSQLPADAIFAALPGTKTHGAHYASQGKAA 69

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            A A++     +     +      PI+ VD+ R+ L + ++ +YG HP + + + G +G 
Sbjct: 70  AALAVLSDHEGTQILVDSG--EKRPIIEVDDVRRVLGILSAEIYG-HPSHEMTIIGVTGT 126

Query: 127 SSVA---SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           S        +++    +GL    IG T T I+      +LTTP    L +  S + ++GV
Sbjct: 127 SGKTTTSYILERGLMAAGLHVGLIGTTGTRINGRKVPTKLTTPEAPTLQQLFSQMKAEGV 186

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +HV +E SSH L   R+ G +  A  FTNL +DH+D+H T Q YF AK   F+   P  +
Sbjct: 187 SHVVMEVSSHALALGRVTGTRFSAAGFTNLSQDHLDFHPTMQEYFEAKALFFDPASPIHA 246

Query: 243 -PAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +++  +D + K + +RA      V +      +Q  +            Q   +    
Sbjct: 247 EKSVVCVNDLWGKNMAERAGADAITVCTEQEAAAHQADYWVSNIDVNPVGAQSFIVHHGA 306

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D   PLPG F + N +VA  L  ++G+D+   +  +  +  VPGR E +    +   
Sbjct: 307 QSTDVHLPLPGGFNIANTVVALALAESVGVDTDAFIRGIADV-AVPGRMERID-RGQEFL 364

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   ++ +++  +R    GRI VV G GGDRD GKRPIMG  A   AD+ IVTD
Sbjct: 365 AVVDYAHKPAAVAVVIDTVRDQVPGRIAVVVGAGGDRDSGKRPIMGAEAARRADLVIVTD 424

Query: 418 DNPRSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPRSEDP KIR  ++ G  G        E G+R EAIR A++     D ++VAGKGHE 
Sbjct: 425 DNPRSEDPAKIREAVLEGAHGVAGSADIREIGDRREAIRIAVQWAQPGDAVIVAGKGHEV 484

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             ++ NG      D + +   L
Sbjct: 485 GQLI-NGVDHHFDDREEVAAAL 505


>gi|167838009|ref|ZP_02464868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis MSMB43]
          Length = 514

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A       
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAGGLDPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGLPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T  AY  AK +LF         AI+  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLRCAIVNRDDPVGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G   +              V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDARRQAADADRELVATNVRATATGTAFRLTSPWGEADVEVGTLGTFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  +EKL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIEKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +          +R  AI  A+    ++DV+++AGKGHE+   +  G+K+   D D  R  
Sbjct: 443 MQDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHESTQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|42520747|ref|NP_966662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|42410487|gb|AAS14596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 524

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 174/539 (32%), Positives = 274/539 (50%), Gaps = 69/539 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE------ 54
           MKL++L++          +I  + + + +I  V+ +   ++ G++FV +           
Sbjct: 1   MKLRELLH----------NIIDVNF-DIEIKGVTCNPNRVKEGYLFVCVSAVSFQRVTLE 49

Query: 55  ----------------DGHLFIPQAIAQGAE--AIVVSSAYSLQDF-------------- 82
                             H  +   I QG +   I V      ++               
Sbjct: 50  SRKPACIQIFPTESQYHAHDCVDVVI-QGTKKDVIPVLDYLDPENLIANEHTKQLHNKNW 108

Query: 83  ---SATIRSNTP---ILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQ 135
              SAT  +NTP   +L   N ++      SR Y  K P+ + AVTGT+GK+SV  F +Q
Sbjct: 109 IPVSATCMTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQ 168

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTT---PSPIYLAKALSYLSSQGVTHVSVEASSH 192
           I Q SG ++  IG   T  +  +++       P    L   L  ++S+ V  +++EASSH
Sbjct: 169 IWQNSGYNAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSH 228

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G+DQ+R+ G++  A +FTN  +DH+DYH++   YF AK RLF E+LP+    I+ AD   
Sbjct: 229 GIDQYRIHGLRFTAAAFTNFSQDHLDYHKSIDEYFEAKKRLFYEVLPEGETVILNADINE 288

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              ++K A     +V++ G  G  I L +     N Q +TI +  + ++  FP+ G+FQ 
Sbjct: 289 YHALLKIAEKRSNKVITYGKTGSDITLLEQTPTPNGQYLTIKIGDEIYNMFFPVLGQFQA 348

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L A G+  + G++       + KL   PGR E V         +VDYAHT ++L+  
Sbjct: 349 YNLLCAIGIVTSSGLN--YREISIGKLVSPPGRMEKVQ-----PFAFVDYAHTPSALKQA 401

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L +++   + +I++VFGCGG+RD+ KR  MGKIA   AD  I+TDDNPR EDP KIR +I
Sbjct: 402 LLSLKWHFNKKIVLVFGCGGNRDRKKRSEMGKIAQMYADKVIITDDNPRDEDPAKIRHDI 461

Query: 433 IHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +   P  +E G+R EAI   I++  N+  +L+VAGKGHE   I+ N   +   D ++I+
Sbjct: 462 LLYCPSALEIGDRKEAIEKGIDIAYNEGMILLVAGKGHEKFQIIGNQTFE-FSDVEVIK 519


>gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
 gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
          Length = 483

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 139/479 (29%), Positives = 232/479 (48%), Gaps = 20/479 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + KI  + SDSR+++   IF  I G   DGH +I  AI QGA+ IV S     +     
Sbjct: 12  NDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAKVIVHSKELLEK----- 66

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
            ++    ++V+NT + L+  ++  Y        I+ VTG+SGK+ VAS ++    R   +
Sbjct: 67  -KNGIIYILVENTLEELNRVSNIFYDYPSNKMKIIGVTGSSGKTVVASMIKDAMSRY-CN 124

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG  S   + F +D   TTP  +YL + L  ++  GV  V++EASSHGL   R+D +
Sbjct: 125 TGYIGTISLEYNGFKEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSHGLALGRVDSV 184

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G +H+D+H T++ Y  AK +LFE + P     ++ +DD     +      
Sbjct: 185 NFSVAVMTNIGAEHLDFHGTREQYILAKQKLFEMIKP-SGWVVLNSDDENFLRIKNSTKG 243

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              ++L+ G   +  +  K      +  +  +S +G  +    P+  +F +YN L     
Sbjct: 244 ---KILTYGINNQSDVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNIYNVLALVCT 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
            IA+G D  +VL+ ++++  V GR E +    +   + +DY    N+ E I + + ++  
Sbjct: 301 LIAMGCDEKMVLQAVKEVKPVEGRMELIKAK-QNFSVIIDYCQHINNYEQIFEFVDSVRQ 359

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             GR+I V G  G R+   R  +GK+A    D  I+T  + R E+   I   I   I   
Sbjct: 360 NKGRLIAVLGAPGKRNYKMRREIGKVANKYLDHVILTQLDDRGENVYDICKTIQAEIVDI 419

Query: 440 --IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             +   +R  AI  AIE+  K D++++ GKGHE    +  G      D  I++E +  I
Sbjct: 420 SSVIIPSRQVAIEQAIEIACKDDIILILGKGHEKFISLEVGHVDYPGDSTIVKEAIERI 478


>gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
 gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
          Length = 501

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 154/524 (29%), Positives = 240/524 (45%), Gaps = 60/524 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ ++    PE ++             I+ V+ DSR  + G  FVAI G   DG  F+PQ
Sbjct: 8   LEKILGASVPESVDG------------IDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQ 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV-- 120
           A+A GA  +V                  P +VV + R  L+  A+   G    ++     
Sbjct: 56  ALANGASLVVAERDVE----------GAPTVVVPDARVALAALATATAGHPSHDVTVYGI 105

Query: 121 TGTSGKSSVASFVQQICQRS-GLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT+GK++ +  +  I   + G     +  T+   +    +    TT     +   L+ +
Sbjct: 106 TGTNGKTTSSYVLHGILSAAYGEEKTGLLTTAEIVVGREREPAVRTTGEAPQVQGNLARM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV HV +E SSHG+  HR+ G +  A  FTNL RDH+D H T + YF  K RLFE  
Sbjct: 166 RDAGVEHVVLETSSHGIHLHRVAGTRYAAALFTNLTRDHLDLHGTMEDYFLTKRRLFE-- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV- 295
              + P +   DDAY   ++          L  G  +     + KV         T++  
Sbjct: 224 -WTDGPKLTNVDDAYGARIVAEVPG----TLGFGVSENADYRITKVHPSDGGTAFTLTTP 278

Query: 296 ----EGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               +G+D     +   PL G++ V+N   A+ + + +G+    ++  +  +  VPGRFE
Sbjct: 279 ERFLDGRDAPGVIELQMPLLGDYNVHNVAGASAIALEMGMPLDTLVGAVAHMAQVPGRFE 338

Query: 348 FVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTIT------------SGRIIVVFGCGGDR 394
            V    ++G  + VDYAHT   LE++L   R +              GR+I V+G  G R
Sbjct: 339 RVPAATAKGFEVVVDYAHTEVGLELVLDVARAVVGRDHADGGVRSEGGRVICVYGAAGRR 398

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTA 452
           D  KRP MG+ A  LAD+ I+T+D+   EDP+ I  E++ G          +R +AIR A
Sbjct: 399 DPAKRPKMGEAASRLADVNIITNDDTYDEDPQAIADEVMAGADPSNTTIVLDRRDAIRQA 458

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +      D++VVAGKGHE V  +  G+     D  ++ E+L  +
Sbjct: 459 LTQARPGDIVVVAGKGHEHVQHLPGGDVDFH-DTTVVTELLAEL 501


>gi|190570599|ref|YP_001974957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019149|ref|ZP_03334956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190356871|emb|CAQ54245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995258|gb|EEB55899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 520

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 183/499 (36%), Positives = 280/499 (56%), Gaps = 46/499 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIV---GNKE----DG--HLFIPQAIAQGAE--AIVVSS 75
           + +I  V+ + + ++ G++FV +            +G  H  +   I QGA+   I V  
Sbjct: 18  DIEIKGVTCNPKRVKEGYLFVCVSERSKEHVTCLPNGCVHNCVDVVI-QGAKKDVIPVLR 76

Query: 76  AYSLQDF-----------------SATIRSNTP---ILVVDNTRKFLSLFASRLYG-KHP 114
            +  ++                  SAT  ++TP   +L   + +   S   SR Y  K P
Sbjct: 77  HWDPENLIVNKHTRQLYNENWIPVSATRMTSTPSFAVLYHSDPQGIYSEIVSRFYQFKQP 136

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
           + + AVTGT+GK+SV  F +QI Q    +   IG   T +++  +DN LTTPS   L   
Sbjct: 137 KYVAAVTGTNGKTSVVEFCRQIWQ---DNVASIGTLGTCVNNNRKDNSLTTPSADDLYST 193

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  ++++ V H+++EASSHG+DQ+R+ G++L A +FTN  +DH+DYH++   YF AK RL
Sbjct: 194 LRDINNKNVEHLALEASSHGIDQYRIHGLRLNAAAFTNFSQDHLDYHKSIDEYFEAKKRL 253

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+E+LPKE  AI+ AD     E++  A   G +V++ G +   I L K     N Q +TI
Sbjct: 254 FDEVLPKEKTAILNADIGEYGELLNIAEKRGNKVITYGKKNSDITLLKQIPTANGQYLTI 313

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +  + ++  FP+ G+FQ YN L A G+ I+ G+D   +   ++KL    GR E V T +
Sbjct: 314 QIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQRMC--IDKLASPSGRMEKVNTFA 371

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                +VDYAHT ++L+  L +++   + +I++VFGCGG+RDQ KR  MGKIA  LA   
Sbjct: 372 -----FVDYAHTPSALKQALLSLKWHFNKKIVLVFGCGGNRDQTKRAEMGKIAQMLAGKV 426

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETV 472
           IVTDDNPR EDP KIR +I+   P  +E G+R +AI   I +  ++  +L+VAGKGHE  
Sbjct: 427 IVTDDNPRDEDPGKIRHDILLHCPDALEIGDRKKAIEKGINIAHDENMILLVAGKGHERF 486

Query: 473 HIVTNGEKKMSVDCDIIRE 491
            I+  G+     D ++IRE
Sbjct: 487 QIIE-GQSLEFSDVEVIRE 504


>gi|126452893|ref|YP_001067791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|167847421|ref|ZP_02472929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei B7210]
 gi|242316322|ref|ZP_04815338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
 gi|126226535|gb|ABN90075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|242139561|gb|EES25963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
          Length = 514

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + +  + VTGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAVVNRDDPAGRRLLANLTGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|326382555|ref|ZP_08204246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326198674|gb|EGD55857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 689

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 239/487 (49%), Gaps = 17/487 (3%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
             +   +R ++  +  ++   AG++F A+ G++  G  +  QA A GA  ++   A    
Sbjct: 33  LELHGDDRDVSGATLRAQDAGAGYLFAALPGDRTHGANYAAQARAAGAAGVLTDPAGLAL 92

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
                  ++  +LV    R+ L   ++R+YG     +  + +TGTSGK++ A   +   +
Sbjct: 93  IREDPEAADVTVLVHARPREVLGAVSARIYGDPSSRLTLIGITGTSGKTTTAYLAEAALR 152

Query: 139 RSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +G     +G     +      + LTTP    L +  + ++ +GV  V +E SSH L   
Sbjct: 153 AAGRVVGLVGTVEIRVDGTVVPSSLTTPEAPDLQRMFAVMAERGVDTVVMEVSSHALALG 212

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEV 256
           R+DG     G FTNL +DH+DYH+T   YF AK RLFE   P  +  A +  DD + +  
Sbjct: 213 RVDGCHFAVGGFTNLSQDHLDYHRTMDEYFAAKARLFEAGSPTRARQAAVCVDDVWGRRA 272

Query: 257 MKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVY 313
              A       ++V   G   +  ++ V      Q V I+  +G + +   PLPG + V 
Sbjct: 273 ADVAAQGAATPITVSTTGPADWSVVRTVRTDAGSQTVLIAGPDGAETEMTVPLPGAYNVA 332

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL+A  + +A G D    +  L  +  VPGR E V    +     VDYAH   ++E +L
Sbjct: 333 NALLAVAMTVAAGTDVDTAVAGLAHV-AVPGRLEKV-ERGQEFLAVVDYAHKPAAVEAVL 390

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +   T GR+ VV G GGDRD  KRP+MG  A   AD+ IVTDDNPRSE P  IRA ++
Sbjct: 391 ATLGAQTRGRLAVVLGAGGDRDTEKRPLMGAAAARGADLVIVTDDNPRSEPPADIRAAVL 450

Query: 434 HGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            G            E G+R +AI  A++     DV+++AGKGHE    + +G K    D 
Sbjct: 451 AGARSVDAARGEIREIGDRRDAIAAAVDWARPGDVVLIAGKGHEKGQEI-DGVKHPFDDR 509

Query: 487 DIIREIL 493
            ++ E+L
Sbjct: 510 QVLGELL 516


>gi|41408000|ref|NP_960836.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81414074|sp|Q73YQ3|MURE_MYCPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|41396354|gb|AAS04219.1| MurE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 520

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 163/500 (32%), Positives = 236/500 (47%), Gaps = 25/500 (5%)

Query: 11  FPELINQLSIF------PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
            P L +Q+              +  +  V+  ++ +  G +F A+ G    G     +AI
Sbjct: 18  LPALADQVGAVMAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAI 77

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
            +GA A++  +A   Q    T    TP L+    R  L   A+ +Y    E +  + +TG
Sbjct: 78  ERGAVAVLTDAAGVAQ---LTGGRTTPTLLHPRPRSVLGQLAAAVYAHPSERLTVIGITG 134

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           TSGK++    V+   + +G ++  IG     I      + LTTP    L   L+ ++ Q 
Sbjct: 135 TSGKTTTTYLVESGLRAAGRTAGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQR 194

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-K 240
           V  V +E SSH L   R+DG +   G FTNL RDH+D+H T   YF AK  LF+   P +
Sbjct: 195 VDTVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLR 254

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKD 299
              A++  DD   +E+  RA +A   V + G    +  ++        QQ T I   G  
Sbjct: 255 AHRAVVCIDDEAGREMAARAGDA-VTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQ 313

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 LPG + V N LVA  L  A+G+        L +   VPGR E +    +     
Sbjct: 314 HRAGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQ-TRVPGRMEEIDA-GQDFLAL 371

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +L  +L +++     R+ VVFG GG+RD GKR  MG  A +LAD+ +VTDDN
Sbjct: 372 VDYAHKPGALRAVLSSLKR-PDRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDN 430

Query: 420 PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PR EDP  IR EI+ G+         +E G+R  AIR A+      DV++VAGKGHET  
Sbjct: 431 PRGEDPAAIRREILAGVTESGCAAEVVEIGDRRAAIRHAVAWAGPGDVVLVAGKGHETGQ 490

Query: 474 IVTNGEKKMSVDCDIIREIL 493
             T    +   D   + E L
Sbjct: 491 -RTGEHTRPFDDRVELAEAL 509


>gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 513

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 141/511 (27%), Positives = 240/511 (46%), Gaps = 33/511 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +S DSR   A   F+A+ G+  DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAKGT 61

Query: 69  EAIVVS---SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTS 124
           + I+        S+   S      + I  V+N ++ LS  A   Y  K P+NI+ +TGT+
Sbjct: 62  KLILSDKLPRQSSIATPSVAEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTN 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S++S++ Q+ +     S  +G       +      T  +   L+   +    +   +
Sbjct: 122 GKTSISSYIAQLQKLLDQKSLLLGTNGN-GIYPDLQESTHTTLDILSLYQTISDYENYQN 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +E SSH LDQ R +G+      F+NL  DH+DYH+T   YF AK +LF+        A
Sbjct: 181 LVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKNLKKA 238

Query: 245 IIYADDAYSKEVMKRAHNAGCR-------------------VLSVGYQGKFIHLKKVCAI 285
           +I  DD Y +++ +  + +  R                    +S+  +   I+++     
Sbjct: 239 VINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKSIE 298

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           + +    + +  K    +   L GEF + N  ++             +LE++ KL  V G
Sbjct: 299 NMQTSFDLYISQKHIGTYQTSLVGEFNLMNLGLSLAALDDSS-TRDQLLENISKLKPVKG 357

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +     G +I +DYAHT ++LE  L+ +       +  +FGCGG+RD  KRPIM +
Sbjct: 358 RMEVIAL-VNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTKRPIMAQ 416

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDV 461
           IA   A+  +VT+DN R E  E I  +I  G     +     +R +AI+  IE     DV
Sbjct: 417 IAEKYANKIVVTEDNNRFESIESIFEDIKKGFSHPDKRNFIDSREKAIKYTIENSKANDV 476

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +++AGKGHE   +  NG K+   + ++I + 
Sbjct: 477 ILLAGKGHECY-LDKNGIKEYFDEREVIAKY 506


>gi|167825935|ref|ZP_02457406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 9]
 gi|226199593|ref|ZP_03795149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|225928339|gb|EEH24370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 514

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAVVNRDDPAGRRLLANLTGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|58584749|ref|YP_198322.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419065|gb|AAW71080.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 496

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 165/473 (34%), Positives = 258/473 (54%), Gaps = 31/473 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIV--GNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFS 83
             +I  V+ + + ++  ++FV +   G +  G       I   A AI+ S SA   Q   
Sbjct: 42  NIEIKGVTCNPKKVKEDYLFVCVSEEGERCVGG------IK--ASAIIASFSAIPAQGAE 93

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                    +   N R+      SR Y  K  + + AVTGT+GK+SV  F +QI Q +G 
Sbjct: 94  I-------YIFYPNPREIYGKIVSRFYQFKQLKCVAAVTGTNGKTSVVEFCRQIWQNAGC 146

Query: 143 SSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           ++  +G   T  +      ++ LTTP    L   L  ++S+ + H+++EASSHG+DQ+R+
Sbjct: 147 NAASVGTLGTCVNNERKDNNSNLTTPDADDLYFTLRDVNSKNIEHLALEASSHGIDQYRI 206

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G++L A +FTN  +DH+DYH+    YF AK RLF E+LP+    ++ +D      ++K 
Sbjct: 207 HGLELNAAAFTNFSQDHLDYHKDVNEYFEAKKRLFYEVLPEGKTVVLNSDIDEYYALLKI 266

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A     +V++ G  G  I L +     + Q +TI +  + +   +P+ G+FQ YN L A 
Sbjct: 267 AEKRSNKVITYGKTGSDITLLRQIPTPDGQHLTIKIGDEVYGMFYPVLGQFQAYNLLCAI 326

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+ IA  +D   +   ++K   +PGR E V         +VDYAHT ++L+  L +++  
Sbjct: 327 GIVIASKLDYQRIC--IDKFVSLPGRMEKVK-----PFAFVDYAHTPSALKQALLSLKWH 379

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            S ++++VFGCGG+RDQ KR  MGK+A   AD  IVTDDNPR EDP KIR +I+   P  
Sbjct: 380 FSKKVVLVFGCGGNRDQAKRAKMGKMAKMYADKVIVTDDNPRDEDPAKIRYDILLCCPNA 439

Query: 440 IEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +E G+R EAI+  I +  ++  VL+VAGKGHE   I+ N   +   D ++I+ 
Sbjct: 440 LEVGDRREAIKKGINIAYDENMVLLVAGKGHEKFQIIGNKTFE-FSDVEVIKN 491


>gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 575

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 149/496 (30%), Positives = 232/496 (46%), Gaps = 24/496 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  +L   P    E  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 66  LGELAARLGAGPQDAGE--VTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGAAA 123

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           I+   A + +       +  P+LV D+ R  +   A+ +YG+    +L   +TGTSGK++
Sbjct: 124 ILTDPAGAER----AAATGLPVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTT 179

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G S+  IG     I      +  TTP    L    + +  +GV  V++
Sbjct: 180 TAYLVEGGLRGAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 239

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF     K     + 
Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSKLGV--VN 297

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306
            DD Y + ++  A        + G+       + V         T I  +G+      PL
Sbjct: 298 FDDEYGRRLVDEASVPVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKAPL 357

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       GID  +  + +  +  VPGR E +    +     VDYAH +
Sbjct: 358 PGPFNVANTLAAIVTLAVAGIDPQIAADGVAGVPGVPGRLERIDA-GQPYLAVVDYAHKT 416

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+++R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 417 DAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPL 476

Query: 427 KIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I A ++ G    +    R + +           A+      D ++VAGKGHE    + +
Sbjct: 477 GILAAMLSGAAE-VPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHEQGQDI-H 534

Query: 478 GEKKMSVDCDIIREIL 493
           G  +   D  ++RE +
Sbjct: 535 GVVRPFDDRKVLREAI 550


>gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 514

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 169/490 (34%), Positives = 244/490 (49%), Gaps = 36/490 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I ++  DSR + +G  F+A+ G  +DGH ++P+A   GA   +V       D +A   
Sbjct: 25  VSIVDLVDDSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGATLAIVE------DEAAARV 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P +VV + R+  +L A+  +          AVTGT+GK++    ++ +   +G  + 
Sbjct: 79  IDMPAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVGLLRHLLDVAGQRAA 138

Query: 146 QIGPTSTISS-----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            IG    +             LTTP P+ L + L  L+ +GVT V++E SSH L QHR+D
Sbjct: 139 SIGTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVAMETSSHALHQHRVD 198

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+   A  FTNL RDH+DYH T +AY +AK+ L   LL  +  A    DD   +  +   
Sbjct: 199 GVHFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLS-LLAPDGVACFNIDDVTWQHTVAEM 257

Query: 261 ------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEF 310
                  +A  R      Q   +    V       +  + V             PL G+F
Sbjct: 258 DVSGSQASAPRRTTFSALQDADVTAHDVVYDATGSRFELRVRTAQGTTQHQVTLPLIGDF 317

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL AA   +A+GI    V + L +   VPGR E + T      +  DYAHT ++LE
Sbjct: 318 NVANALGAAAGALAMGITPQDVADGLSQSPQVPGRLERLRTE---PTVLRDYAHTPDALE 374

Query: 371 MILKNIRTIT------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             L  +R  T        R+IVVFGCGGDRD+GKRP+MG IA  LAD+ IVT DNPR+ED
Sbjct: 375 RALLAVRPFTMRPDGAPSRLIVVFGCGGDRDRGKRPVMGSIAERLADVTIVTSDNPRTED 434

Query: 425 PEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           PE+I  +I  G+         +R +AI  A+ M +  DV+V+AGKGHET  I        
Sbjct: 435 PERILDDIEAGMTRRDHQRIVDRRDAIAAALRMASAHDVVVLAGKGHETYQI-RGTTSYP 493

Query: 483 SVDCDIIREI 492
             +  I++E+
Sbjct: 494 FDERIIVQEL 503


>gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 537

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 158/478 (33%), Positives = 241/478 (50%), Gaps = 23/478 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V   ++ I  G +F A+ G +  G  F   A+A+GA AI+   A       + + S+
Sbjct: 53  VTGVDLRAQGIVEGDLFAALPGARAHGAEFAADALARGATAILTDEAGFA--LVSALGSD 110

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LV D+ R  L   ++ +YG+  E +  + +TGTSGK++ +  V+     +G ++  +
Sbjct: 111 MPVLVHDDPRGVLGELSATIYGRPSEKMQVIGITGTSGKTTTSYLVEAALTAAGRTTGLV 170

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T +      + LTTP    L    + +  QG+  V +E SSH L   R+DG++   
Sbjct: 171 GTIETRMRGRRVPSALTTPEAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDV 230

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           G+FTNL +DH+D+H+  + YF AK RLF  +       A+I  DD + + +   A  A  
Sbjct: 231 GAFTNLSQDHLDFHRDFEDYFAAKARLFAADSSVHAQHAVICIDDVWGQRMADVARGAHS 290

Query: 266 RVLSV----GYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAA 319
            V +V      +G            +  Q     + EG   D    LPG++ V NA +A 
Sbjct: 291 IVTTVATTPDSEGAVWTAGPATVSPSGSQTFALTTAEGTTLDVELRLPGQYNVANASLAV 350

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            LC A+G+D    +E +  +  VPGR + +    +     VDYAH   ++E ++  +R  
Sbjct: 351 ALCAALGVDPRDAVEGIAGVD-VPGRVQRID-RGQDFLAVVDYAHKPAAVEAVIATLREQ 408

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR+ VV G GGDRD GKRP+MG  A   AD+ I+TDDNPRSEDP KIRA +  G  G 
Sbjct: 409 VRGRVAVVVGAGGDRDAGKRPLMGAAAARGADLLIITDDNPRSEDPAKIRAAVREGALGV 468

Query: 439 -------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                    E  +R +AI  A+      DV++VAGKGHE    + +G K    D D++
Sbjct: 469 PESERGQVWEVADRAKAIADAVGWAQAGDVVLVAGKGHEIGQEI-HGVKYPFDDRDVL 525


>gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 508

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 129/509 (25%), Positives = 232/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++ K   +LI     +     + +I+ ++  S+ +  G++F A+ G   DGH FI 
Sbjct: 4   KLNDVLLKLDQDLIK----YVKGSLDLEISGITYSSKLVLPGFVFFALSGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI  G+  IV S      +       N   + +D+   +KF+S F++  Y +  + +  
Sbjct: 60  IAIQNGSNVIVCSRDLDFYN------PNVTYIKIDDFNIKKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I          +      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLRKKGVKVGFISTVFFDDGNGNLIKNPYRQSTPESTEIHLF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +    V +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSNMVKNKVQYAILESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRAVSDDAGFGVINLDDFYSYDFKNAIKKSF--TYSLKNSQADFFVSFINEKTDSTEF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   +  D   ++++L  +  + GR + + 
Sbjct: 292 EFYHKGVKYFANVNLLGSFNVENVMAALILVSKILNSDIQDIVDNLSCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+I+   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKKFTTNRLISVFGSAGERDFAKRFLQGQISDSYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +         +R +AI  AI +    D++V 
Sbjct: 411 DLIVLCDEDPRGENSMCIIKDIAKGIVNKVANQDLFFIPDRKQAIEKAISLARAGDLIVT 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  NGE     + ++++  +
Sbjct: 471 LGKGHESSIIYKNGEI-FWNEQEVVKNAI 498


>gi|254199058|ref|ZP_04905473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
 gi|169656888|gb|EDS88285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
          Length = 514

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAVVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|312140147|ref|YP_004007483.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-dia minopimelate
           ligase mure [Rhodococcus equi 103S]
 gi|311889486|emb|CBH48803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Rhodococcus equi 103S]
          Length = 547

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 157/490 (32%), Positives = 245/490 (50%), Gaps = 24/490 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--LQDFSATI 86
           ++  V   ++ ++ G +F A+ G    G  F+  AIA GA A++   A    L   +   
Sbjct: 51  EVTGVELRAQAVRRGDLFAALPGAHTHGAEFVGVAIAAGASAVLTDDAGVAMLAAGTEES 110

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++ P+LV  + R+ L   ++ +YG   E   I+ +TGTSGK++ +  V+     +G + 
Sbjct: 111 AASLPVLVHPDPRQVLGEASATIYGHPSEHMQIIGITGTSGKTTTSYLVEAGLAAAGHTI 170

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T ++     + LTTP    L    + +  +G+  V +E SSH L   R+DG++
Sbjct: 171 GLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRERGIDTVVMEVSSHALALGRVDGVR 230

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHN 262
              G+FTNL +DH+D+H+    YFNAK RLF  +       A+I  DD +   + + A +
Sbjct: 231 FSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAVCAQRAVICTDDRWGVRMAEIARH 290

Query: 263 AG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNA 315
           A          +S      +       +    Q  T++  +G        LPG + V NA
Sbjct: 291 AHPADADAVETVSTHPPADWTATATSSSDTGNQVFTLTGPDGTPRTATLRLPGHYNVANA 350

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +AA +C + G D    L  +  +  VPGR E V    +     VDYAH   +LE ++  
Sbjct: 351 ALAAAICCSAGADVDAALAGIANVD-VPGRVERV-ERGQDFLAVVDYAHKPAALEAVIAT 408

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R  T GRI VV G GGDRD+GKRP+MG+     AD+ +VTDDNPR+EDP  IRA+++ G
Sbjct: 409 LRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQMLAG 468

Query: 436 IP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                        E G+R EAI  A+      DV++VAGKGHE+   V +G K    D +
Sbjct: 469 AVAVPDAERGAVREIGDRAEAIAAAVRWARTGDVVLVAGKGHESGQEV-HGVKHPFDDRE 527

Query: 488 IIREILGLIL 497
           ++   +  I+
Sbjct: 528 VLAAAIARIV 537


>gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
 gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
          Length = 506

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 142/494 (28%), Positives = 223/494 (45%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL     +    ++  ++ DSR ++ G ++ A+ G +  G  F+ QA       
Sbjct: 17  LAELADQLGSSAPESA-AEVTGITHDSRAVRPGDLYAALPGARLHGADFVNQAA----GL 71

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
              +             S  P+LVVD+ R  +   A+ +YG    ++L   +TGTSGK++
Sbjct: 72  GAAAVLTDPTGAERAAASGLPVLVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   +    +         I      +  TTP    L    + +  +GV  V++E
Sbjct: 132 TAYLVEGGLKTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG     G FTNL  +H+++H   + YF AK +LF     +    ++  
Sbjct: 192 VSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTP--KRGKLGVVNV 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD Y + ++  A        + G+       + V         T +  +G+      PLP
Sbjct: 250 DDEYGRRLVNEATVPVVTYSAEGHPDADWRAEDVEVGQLDSTFTVVGPKGERISAKSPLP 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A       G+D     + +  +  VPGR E V    +     VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDA-GQPYLAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T G++ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLRALRKVTEGKLHIVLGCGGDRDTTKREPMGAAAARLADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                +R  AI  A+      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLQGAASVPAYERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRQVLREAI 501


>gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate
           ligase [Streptomyces venezuelae ATCC 10712]
          Length = 565

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 149/498 (29%), Positives = 233/498 (46%), Gaps = 23/498 (4%)

Query: 11  FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L  QL +  P   R  +I+ ++ DSR ++ G ++ A+ G +  G  F+ QA   GA 
Sbjct: 56  LGDLAAQLGVDVPDAPRPTEISGITHDSRAVRPGDVYAALPGARAHGADFVAQAAGLGAA 115

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127
           AI+     + +       +  P+LVV+N R  +   A+ +YG+   ++L   +TGTSGK+
Sbjct: 116 AILTDPTGAER----AAATGLPVLVVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKT 171

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A  V+   + +G  +  +G     I      +  TTP    L    + +  +GV  V+
Sbjct: 172 TTAYLVEGGLRGTGHHTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVA 231

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+DG       F NL  +H+++H   + YF AK  LF     +     +
Sbjct: 232 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSDMEDYFQAKAGLFTPERSRLGV--V 289

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFP 305
             DDAY + ++  A        + G        + +    +    T +   G+      P
Sbjct: 290 NLDDAYGRRLVGEATVPVLTFSAEGRADADWRAEDLVLGSHDSTFTAVGPGGERISATAP 349

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG F V N L A     A G+D     E +  +  VPGR E V    +     VDYAH 
Sbjct: 350 LPGPFNVANTLAAIATLAAAGLDPKAAAEGVAAVPGVPGRLERV-EAGQPYLAVVDYAHK 408

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP
Sbjct: 409 TDAVESVLRSLREVTEGRLHVVIGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDP 468

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVT 476
             I   ++ G    +    R E +           A+      D ++VAGKGHE    + 
Sbjct: 469 LTILTAMLAGAAE-VPAEERGEVLVLADRAAAIAAAVARARPGDTVLVAGKGHEQGQEIA 527

Query: 477 NGEKKMSVDCDIIREILG 494
            G  +   D  ++RE + 
Sbjct: 528 -GVVRPFDDRQVLREAIA 544


>gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
 gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
          Length = 505

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 163/482 (33%), Positives = 240/482 (49%), Gaps = 30/482 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P +   +++ +++ DSR +  G +FVA+ G +  G      A  QGA AI+   A    
Sbjct: 24  LPSEVAGQRVTDLAQDSRRVTPGAVFVALRGTQGHGLAHARAAAEQGAVAILWDEA---- 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
              A    + P+L +   R  L      L+G  P +  ++AVTGT GK+SV+       +
Sbjct: 80  --EAAPALSIPVLHLPGLRVALPAICDALWGAWPADYPVVAVTGTDGKTSVSQLFAGALE 137

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + G+ +  +G   T      +D   TTP  I L + L++L++ G   +S+EASSHGL+Q 
Sbjct: 138 QLGVPTGVVGTLGTGRFGALEDCGHTTPGVIDLHRHLAHLTADGCRALSIEASSHGLEQG 197

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ G+ +     T LG DH+D+H +QQAY +AK RLF    P    A++ ADDA  + ++
Sbjct: 198 RMAGLPVRVAVLTRLGSDHLDFHGSQQAYADAKARLFA--WPGLETAVLNADDALGQRLI 255

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +          S       +  ++V A  +  + T+ V G+ +     L G FQV N L 
Sbjct: 256 RETTAEHILTYSAVGASADLVAREVEAGSDGIRFTLEVAGEAWPVQAALFGLFQVGNLLA 315

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                 A+G      ++ + +L  VPGR E     S G  + VDYAHT  +L   L  +R
Sbjct: 316 TLAALRALGHSWPAAVDAVSRLRGVPGRMERFELPS-GALLVVDYAHTEQALAAALDALR 374

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             T+GR+I VFGCGGDRD  KRP MG+ A   AD  IVTDDNPRSEDP  IRA ++ G  
Sbjct: 375 PHTAGRLIAVFGCGGDRDVTKRPAMGRAASARADQVIVTDDNPRSEDPAAIRAAVLAGC- 433

Query: 438 GFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                 +R EA R            +      DV+++AGKGHET   V   +     D +
Sbjct: 434 ------DRPEACRELGDREAAVRAAVAEAGPGDVILLAGKGHETTQQVGT-QFYPFSDRE 486

Query: 488 II 489
           + 
Sbjct: 487 LA 488


>gi|53720640|ref|YP_109626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
 gi|167817535|ref|ZP_02449215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 91]
 gi|167896010|ref|ZP_02483412.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 7894]
 gi|167920624|ref|ZP_02507715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei BCC215]
 gi|52211054|emb|CAH37042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
          Length = 514

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + +  + VTGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAVVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|293402023|ref|ZP_06646162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304415|gb|EFE45665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 489

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 136/491 (27%), Positives = 229/491 (46%), Gaps = 22/491 (4%)

Query: 14  LINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L   L +  +   + +I   VS DSR ++  W+FV   G   DG  +I  A+ +GA  ++
Sbjct: 4   LNELLGMLHIACDDTRILQGVSDDSRKVKKDWLFVCRKGITHDGAAYIDDALRKGAV-VL 62

Query: 73  VSSAYSLQDFSATIR-----SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
                  +     +          +   ++            +G   +++  + V+GTSG
Sbjct: 63  CDKKRQWRKNGQKVEATSHQEKEQVYACEDVEAIAQALIELYFGDLCKHLCVIGVSGTSG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SVA  +  I ++    +F+IG      +        TTP    LA  L     QG TH
Sbjct: 123 KTSVACIITHILRKQQKKTFRIGTHEVDDNQHIQAIPNTTPDSFTLANLLKEAIQQGFTH 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +E SSH +DQ+R+  +   A  +TN+ +DH+DYH T+  Y   K +L    L K+   
Sbjct: 183 IVMEVSSHAIDQNRICFMSYDAIVYTNITQDHLDYHFTRTHYMYTKFKL-RRYLKKDGFI 241

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II  D  Y   +MK  H +  +++++G+      ++ +         TI+     + F+ 
Sbjct: 242 IINKDFPY---LMKLQHLSDAKLITIGFDAAHFTIEDMHLSEQGAIFTIN----GYSFVI 294

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G+  VYN   A  LC  + I    ++   + L  V GR E +        + +DYAH
Sbjct: 295 PLLGKMNVYNTTEAIALCHMLNITYEQLIASCQDLPYVSGRMELMKGKKH--TVLLDYAH 352

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T +++E +++  R+I  G++ +V GCGG+RD+ KR +M   A   +D+AI T DNPR E 
Sbjct: 353 TPDAVEKLMEFARSICQGKLYIVVGCGGERDRSKRKLMADAACKYSDMAIFTSDNPRHES 412

Query: 425 PEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I  ++       +    NR  AI+  I++  + D++V+AGKG+E    V  G     
Sbjct: 413 LSTILLDMCKTTYQNYEVVENRYFAIKYTIKIAKESDIIVIAGKGNEKTQDVE-GRMYPF 471

Query: 484 VDCDIIREILG 494
            D D +R+   
Sbjct: 472 DDADCVRKRFA 482


>gi|53726027|ref|YP_104099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|67643634|ref|ZP_00442379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|76812034|ref|YP_334920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121598737|ref|YP_991826.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|124384687|ref|YP_001027319.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10229]
 gi|126448584|ref|YP_001082744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998642|ref|ZP_02264500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|167740317|ref|ZP_02413091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 14]
 gi|217425702|ref|ZP_03457192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|254178840|ref|ZP_04885494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|254191017|ref|ZP_04897523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254202820|ref|ZP_04909183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|254208162|ref|ZP_04914512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|254258612|ref|ZP_04949666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
 gi|254299371|ref|ZP_04966821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|254357634|ref|ZP_04973908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|52429450|gb|AAU50043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|76581487|gb|ABA50962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121227547|gb|ABM50065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|126241454|gb|ABO04547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747067|gb|EDK54144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|147752056|gb|EDK59123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|148026698|gb|EDK84783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|157809125|gb|EDO86295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|157938691|gb|EDO94361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160694754|gb|EDP84762.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|217391290|gb|EEC31322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|238525013|gb|EEP88443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065321|gb|EES47507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|254217301|gb|EET06685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
          Length = 514

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + +  + VTGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAVVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|254180541|ref|ZP_04887139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
 gi|184211080|gb|EDU08123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
          Length = 514

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + +  + VTGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         AI+  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAIVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|237813924|ref|YP_002898375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
 gi|237503508|gb|ACQ95826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
          Length = 514

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         AI+  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAIVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|167904396|ref|ZP_02491601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei NCTC 13177]
          Length = 514

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAVVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 ITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARSGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 517

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 144/489 (29%), Positives = 226/489 (46%), Gaps = 18/489 (3%)

Query: 17  QLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           Q +   + W   +++  + SDSR I  G  F+A  G   DG   +  AIA+GA A +V  
Sbjct: 19  QCAGAALPWLRARVSGSLHSDSRLIAPGDGFIAWPGASTDGRAHVADAIARGATACLVEQ 78

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
           A             + +  +   +      A++ + +    +  LAVTGT+GK+S A ++
Sbjct: 79  AGVAAFAFPAAPGAS-LASLPGLKAAAGPIAAQWFDQPSRQLDVLAVTGTNGKTSTAWWL 137

Query: 134 QQIC--QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                 +         G     +    +   +TTP P+ L +AL     +G++  ++EAS
Sbjct: 138 ADALNGRAKSPVCALAGTLGLGVPPVLETAGMTTPDPLRLQRALRQFVDRGLSACAIEAS 197

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S GL+Q RL G ++ A  FTN  +DH+DYH +  AY+ AK  LF+   P    A+I  DD
Sbjct: 198 SIGLEQGRLAGTQIRAAIFTNCTQDHLDYHGSMAAYWRAKRALFD--WPGLQAAVINIDD 255

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               ++          + S+  QG      + +       + T+            + G 
Sbjct: 256 PAGAQLHAELAGRVPDLWSISTQGPARLAARDITLAAQGLRCTVREGAAPQRLTTRVIGH 315

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + + N L       ++G   A  L+    L  VPGR + +    +   + VDYAHT ++L
Sbjct: 316 YNLQNLLAVLATLRSLGWPLAEALQAGAGLQPVPGRMQQLALAGQ-PLVVVDYAHTPDAL 374

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L+ +R +    +GR+  VFGCGGDRD GKRP+MG  A   AD  ++T DNPRSEDP+
Sbjct: 375 AKALQALRPLAARRAGRLWCVFGCGGDRDAGKRPLMGAAAEQQADRLLLTSDNPRSEDPD 434

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ GI        + +R  AI  A+      DVL++AGKGHE    V  G ++  
Sbjct: 435 AILRQILQGISRRRAVRTEPDRAAAIAQAVAEAAPADVLLIAGKGHEDSQEVA-GVRRPF 493

Query: 484 VDCDIIREI 492
            D    +  
Sbjct: 494 SDWAHAQRA 502


>gi|118462627|ref|YP_881535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
 gi|254775003|ref|ZP_05216519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|167017295|sp|A0QF47|MURE_MYCA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|118163914|gb|ABK64811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
          Length = 520

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 164/500 (32%), Positives = 235/500 (47%), Gaps = 25/500 (5%)

Query: 11  FPELINQLSIF------PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
            P L +Q+              +  +  V+  ++ +  G +F A+ G    G     +AI
Sbjct: 18  LPALADQVGAVMAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAI 77

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
            +GA A++  +A   Q    T    TP L+    R  L   A+ +Y    E +  + +TG
Sbjct: 78  ERGAVAVLTDAAGVAQ---LTGGRTTPTLLHPRPRSVLGELAAAVYAHPSERLTVIGITG 134

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           TSGK++    V+   + +G ++  IG     I      + LTTP    L   L+ ++ Q 
Sbjct: 135 TSGKTTTTYLVESGLRAAGRTAGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQR 194

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-K 240
           V  V +E SSH L   R+DG +   G FTNL RDH+D+H T   YF AK  LF+   P +
Sbjct: 195 VDTVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLR 254

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKD 299
              A++  DD   +E+  RA +A   V + G    +  ++        QQ T I   G  
Sbjct: 255 AHRAVVCIDDEAGREMAARAGDA-VTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQ 313

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 LPG + V N LVA  L  A+G+        L +   VPGR E +    +     
Sbjct: 314 HRAGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQ-TRVPGRMEEIDA-GQDFLAL 371

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +L  +L +++     R+ VVFG GG+RD GKR  MG  A +LAD+ +VTDDN
Sbjct: 372 VDYAHKPGALRAVLSSLKR-PDRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDN 430

Query: 420 PRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PR EDP  IR EI+ G          IE G+R  AIR A+      DV++VAGKGHET  
Sbjct: 431 PRGEDPAAIRREILAGATESGCAAEVIEIGDRRAAIRHAVAWAGPGDVVLVAGKGHETGQ 490

Query: 474 IVTNGEKKMSVDCDIIREIL 493
             T    +   D   + E L
Sbjct: 491 -RTGEHTRPFDDRVELAEAL 509


>gi|134280166|ref|ZP_01766877.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
 gi|134248173|gb|EBA48256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
          Length = 514

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAVVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|167721348|ref|ZP_02404584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei DM98]
 gi|167912657|ref|ZP_02499748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 112]
          Length = 514

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAEGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         AI+  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAIVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 492

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 134/487 (27%), Positives = 231/487 (47%), Gaps = 21/487 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+NQL     Q  E +I  ++ DSR  +   +F  + G + DGH F+  AI  GA A+V 
Sbjct: 2   LLNQL---FKQAPEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVH 58

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVAS 131
           S                    V++    L++ A   Y +      +  VTGT+GK S+A 
Sbjct: 59  SEEL------VHYEEGILYFRVNDVVDTLNVIADLFYAEASYHLQMFGVTGTNGKESIAK 112

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +Q++      +      + T  +      LTTP+ I L   L  +   G+   ++E SS
Sbjct: 113 IIQEVLNPDKATGNIGSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSS 172

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G++Q R+  +      FTNL  +H+D+H T Q YF AK + F++L  +++ AI   DD 
Sbjct: 173 VGVEQKRVQSVHFDYAIFTNLDHNHLDFHGTMQNYFEAKKKFFDDL-DEKACAITNIDDP 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           Y    +K   ++  RV++ G   + ++ +++     +     + V  +++D    L   F
Sbjct: 232 YG---LKMVEDSEARVVTYGMSEEAMYSIRQYRLKKDGTSFCLKVYDQEYDIETNLVSRF 288

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N   A       G+   L+ E ++ L  + G  + +    +   + VD AHT + L 
Sbjct: 289 NLMNLTAAIVALHESGVKMELIQERVKFLTQMEGHMQMIQ-EGQNFNVLVDIAHTVDGLS 347

Query: 371 MILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +L+   +IT     IIVV G  G RD+ KR  +G +     D+ I+T+++PR+E P +I
Sbjct: 348 RVLEYATSITPKNCRIIVVNGSVGKRDKIKRQKVGNLMDQYCDMIILTEEDPRNESPREI 407

Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
             EI  GI    ++   +R +AIR A+E+ + +D ++V GKG++       G      D 
Sbjct: 408 AEEIAKGIDKTPYLIISDRYDAIRQALELADPEDTVLVLGKGNQKFMERDIGRCSYQGDV 467

Query: 487 DIIREIL 493
            I++E+L
Sbjct: 468 IIVKEVL 474


>gi|159038983|ref|YP_001538236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
 gi|157917818|gb|ABV99245.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
          Length = 515

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 158/504 (31%), Positives = 244/504 (48%), Gaps = 23/504 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L DL  +   E             E  +  V+  S+ ++ G ++ A+ G +  G  F+
Sbjct: 13  IRLGDLADRLAAEPDAGTVNLRPGPSEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFV 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A   GA A++   A +    SAT ++  P+LVV + R  L   AS +YG     +  +
Sbjct: 73  PAAARAGAVAVLTDPAGA----SATAQAGLPMLVVPDPRAVLGDLASAVYGDPTAGLAVI 128

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S A  V+   + +G  +  IG   T +   A D+  TTP    L   L+  
Sbjct: 129 GVTGTAGKTSTAYLVESGLRAAGHVTGLIGTVETRLGDLAMDSVRTTPEATDLHAMLAAA 188

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GVT V +E SSH L   R+ G++   G +TN G DH+D+H     YF AK +LF+  
Sbjct: 189 RERGVTAVVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHVDSADYFAAKAKLFDG- 247

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VE 296
             +    ++  DD   + + ++A        + G +        V      Q+ T+   +
Sbjct: 248 --RCEVEVLNHDDPALRPLYRQAT---VTYSAAGDRSATWWADAVGGEGYAQRFTLHGPD 302

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G        LPG   V NAL+A  + +A G+D+      +     VPGR E V       
Sbjct: 303 GLALPAGVALPGRHNVANALLAIAVLVAAGVDAKTAAAGVAACGGVPGRLELVRAPG-PV 361

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           R  VDYAH ++++   L  +R   +GR +I + G GGDRD+GKRP+MG  A + AD+ +V
Sbjct: 362 RGVVDYAHKTDAIVAALAALREFGAGRRLICLLGAGGDRDRGKRPLMGIAAAEGADVVVV 421

Query: 416 TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           TDDNPR+E+P +IRAE++ G          +E   R  AI  A+ +    DV+ + GKGH
Sbjct: 422 TDDNPRTEEPAEIRAEVLAGAYRAGTDARVLEVPGRRAAIAEAVRLAEPGDVVALLGKGH 481

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    V +GE +   D   +   L
Sbjct: 482 EQGQEV-DGEVQPFDDRTELAAAL 504


>gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Delftia acidovorans SPH-1]
 gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans
           SPH-1]
          Length = 509

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 144/480 (30%), Positives = 228/480 (47%), Gaps = 26/480 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR ++ G  F+A  G   DG   +  A+ +GA A +V +    Q   A   S   I
Sbjct: 30  LQTDSRKVRPGDAFIAWPGGATDGRAHVASALERGAMACLVEA----QGVEAFGFSGEHI 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS----SFQ 146
             +   +    L A + +       ++LAVTGT+GK++ A ++     +  L        
Sbjct: 86  AALPGLKAATGLIADQWFQHPSAQIDVLAVTGTNGKTTTAWWLAHALAQVKLQERSGCAL 145

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     I    +   +TTP P+ L +A    +  G+   ++EASS G+ +HRLDG ++ 
Sbjct: 146 VGTLGVGIPPAMESTGMTTPDPVRLQRAFREYADAGLAACAIEASSIGIVEHRLDGTRIR 205

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK----RAH 261
              FTN  +DH+DYH + QAY++AK  LF+   P    A++  DDA+   +      R  
Sbjct: 206 VALFTNFTQDHLDYHGSMQAYWDAKAALFD--WPGLQAAVVNVDDAHGARLWATLQSRKQ 263

Query: 262 NAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            A   V S+  +G      K +         T+   G        + G++ V N L    
Sbjct: 264 PAALDVWSISIEGAARLQAKDIALGAEGLSFTVIEAGHSLRMHTRMVGQYNVSNLLGVLA 323

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-- 378
               +G+     +     L  VPGR + +    +   + VDYAHT ++L+  L+ +R   
Sbjct: 324 ALRCLGLTLDQAVAACVHLEPVPGRMQQIVQPGQ-PLVAVDYAHTPDALDKALRALRPAA 382

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               GR+  VFGCGGDRD  KRP+MG+ A   AD  +VT DNPRSE P++I  +I+ G+ 
Sbjct: 383 EQRRGRLWCVFGCGGDRDATKRPLMGQAAQKNADCVLVTSDNPRSEVPDRIIDQILAGMQ 442

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                  + +R  AI  AI   +++DV+++AGKGHE     T G++    D     + L 
Sbjct: 443 PGENLQSQADRAAAIAQAIAHASERDVVLIAGKGHEDYQE-TAGQRHPFSDMAEAHKALA 501


>gi|291296876|ref|YP_003508274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
 gi|290471835|gb|ADD29254.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
          Length = 481

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 148/502 (29%), Positives = 230/502 (45%), Gaps = 44/502 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAI 64
            P L     +F       ++  V+ DSR +Q G++FVAI G         DGH +IPQAI
Sbjct: 1   MPTLQELFGLFGQTAPALEVRGVTHDSRLVQPGFVFVAIPGVPLPSRKPFDGHDYIPQAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
             GA A+V      L         + P L V + R  L+  ++  +G   + +  L VTG
Sbjct: 61  QNGAVAVVGMRELHL---------SVPYLRVADARAALADLSAAFWGYPAQRLELLGVTG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYLAKALSY 176
           + GK++VA  +  + QR+      +G  ST+               TTP    + + L  
Sbjct: 112 SKGKTTVAVLLHHLLQRA---RPPVGRLSTVGIKIGEEELFLPGHFTTPEAPQVQEMLHR 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G     +E SSH L   R+ G++   G FTNL +DH+D H + + YF  K +L E 
Sbjct: 169 FVQAGCRQAVLEVSSHALALERVRGLEYRVGVFTNLYQDHLDLHGSMENYFAEKKKLLER 228

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  A++ +D+ +++ +  R         S G QG +     +       +  +   
Sbjct: 229 ----SRFAVVNSDNPWTQTLRGRPQ-----TWSYGQQGDWQ-AHNLVESSTGLEFEVVSP 278

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F    P+ G F   NAL A      +G+    + E L     VPGR + V       
Sbjct: 279 MGRFAVRLPMVGRFNAENALAAMAAAAQVGLSVEQIQEGLAGFPGVPGRMQLVQAA--PF 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           R+ VD+AHT  SLE  L+ +R  T GR++VV G  G++D  +R  +G++A  LAD+AI T
Sbjct: 337 RVVVDFAHTGASLEAALQTLRPTTQGRLLVVIGAAGNQDPSRRVGIGQVAARLADLAIFT 396

Query: 417 DDNPRSEDPEKIRAEI--IHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +++ R+E  E I   +   HG P  ++   +R EAIR AI+     D L+ +GKGHE   
Sbjct: 397 EEDHRTEPLEAILEAMAQAHGDPRRYVLIPDRREAIRYAIQEAQPGDTLLFSGKGHERT- 455

Query: 474 IVTNGEKKMS-VDCDIIREILG 494
            +  G + +   + D +R  L 
Sbjct: 456 -LERGTEAIPWNEVDEVRRALA 476


>gi|312114849|ref|YP_004012445.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219978|gb|ADP71346.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 455

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 200/442 (45%), Positives = 271/442 (61%), Gaps = 9/442 (2%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLS 103
           +F A+ G K DG       +A    A    +   L   +A     + PIL     R+ L+
Sbjct: 2   LFAALSGTKADG-------MAYAKAAEAAGAVAVLAGETANAEGLSLPILRAAEPRRALA 54

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRL 162
           L A+R Y   P+ I AVTGT+GK+SVA+F++QI   +G  +  +G    I++   +    
Sbjct: 55  LLAARFYRAQPDIIAAVTGTNGKTSVAAFLRQIWATAGHDAASLGTIGIITNAGERPLSH 114

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TTP P+ L KAL+ L+++GVTH+++EASSHGLDQHRLDG++  AG+FTN+ RDH+DYH T
Sbjct: 115 TTPDPVALHKALADLANEGVTHLALEASSHGLDQHRLDGVRFSAGAFTNITRDHLDYHPT 174

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + YFNAKMRLF +LLP  +PAII AD  ++ +V+  A      V++VG +G  + LK V
Sbjct: 175 FEDYFNAKMRLFRDLLPSGAPAIIDADGDHADDVVGTARAKKLDVMTVGERGAALCLKGV 234

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +Q+++I   G+ F  L PL G FQV NALV+AGL + +G  +  V E LE L   
Sbjct: 235 ERDGFRQRLSIIYRGRLFTVLLPLAGAFQVSNALVSAGLALGLGSSAGGVFEALETLRGA 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR ++VG  S G  I+VDYAHT ++L   L+ +R   +GR+ VV GCGGDRD+GKRP M
Sbjct: 295 KGRLDYVGETSAGAPIFVDYAHTPDALVKALEALRPYVTGRLHVVLGCGGDRDRGKRPEM 354

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           G+ A   ADI  VTDDNPRSE+P  IRA I+   PG  E   R +AI  AI  L + D+L
Sbjct: 355 GRAATANADIVYVTDDNPRSEEPAAIRAAIMAAAPGATEIDGRADAIAIAIGNLERGDLL 414

Query: 463 VVAGKGHETVHIVTNGEKKMSV 484
           +VAGKGHET  IV       S 
Sbjct: 415 LVAGKGHETGQIVGTKVIPYSD 436


>gi|325676972|ref|ZP_08156644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552272|gb|EGD21962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 547

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 156/490 (31%), Positives = 245/490 (50%), Gaps = 24/490 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--LQDFSATI 86
           ++  V   ++ ++ G +F A+ G    G  F+  AIA GA A++   A    L   +   
Sbjct: 51  EVTGVELRAQAVRRGDLFAALPGAHTHGAEFVSVAIAAGASAVLTDDAGVAMLAAGTEES 110

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++ P+LV  + R+ L   ++ +YG   E   I+ +TGTSGK++ +  V+     +G + 
Sbjct: 111 AASLPVLVHPDPRQVLGEASATIYGHPSEHMQIIGITGTSGKTTTSYLVEAGLAAAGHTI 170

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T ++     + LTTP    L    + +  +G+  V +E SSH L   R+DG++
Sbjct: 171 GLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRERGIDTVVMEVSSHALALGRVDGVR 230

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHN 262
              G+FTNL +DH+D+H+    YFNAK RLF  +       A+I  DD +   + + A +
Sbjct: 231 FSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAVCAQRAVICTDDRWGVRMAEIARH 290

Query: 263 AG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNA 315
           A          +S      +       +    Q  T++  +G        LPG + V NA
Sbjct: 291 AHPADADAVETVSTHPPADWTATATSSSDTGNQVFTLTGPDGTPRTATLRLPGHYNVANA 350

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +AA +C + G D    L  +  +  VPGR E V    +     VDYAH   +LE ++  
Sbjct: 351 ALAAAICCSAGADVDAALAGIANVD-VPGRVERV-ERGQDFLAVVDYAHKPAALEAVIAT 408

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R  T GRI VV G GGDRD+GKRP+MG+     AD+ +VTDDNPR+EDP  IRA+++ G
Sbjct: 409 LRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQMLAG 468

Query: 436 IPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                        E G+R +AI  A+      DV++VAGKGHE+   V +G K    D +
Sbjct: 469 AVAVPDAERGEVREIGDRADAIAAAVRWARTGDVVLVAGKGHESGQEV-HGVKHPFDDRE 527

Query: 488 IIREILGLIL 497
           ++   +  I+
Sbjct: 528 VLAAAIARIV 537


>gi|291521921|emb|CBK80214.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 507

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 152/522 (29%), Positives = 239/522 (45%), Gaps = 46/522 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L ++  P ++ Q S       +  I  ++  S+ +    +F+ I G ++DGH +I
Sbjct: 1   MILKAL-FERIPAVLCQGSW------DTDIASIAMCSKEVTNNSLFICIKGMEQDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSAT-----------------IRSNTPILVVDNTRKFLS 103
            +A  +GA A +V  A+  +  S                   +     I+ V NTR+  +
Sbjct: 54  QEAAERGAAACLVEEAFWKKSASVHGNLKQAEKKTSAYGELKLPEQMTIVSVQNTREAAA 113

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQD 159
             A+  Y ++P   L V G +G     S    ++ I + +G  +  +G     I    + 
Sbjct: 114 WAAAAFY-RYPSKELKVIGITGTKGKTSTTFMIRDILEAAGYKTGLLGTIDYEIGEEKKR 172

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID- 218
              TTP  I + + L  ++  G     +E SS GL  HR D I    G FTNLGRDHI  
Sbjct: 173 AERTTPEAIDIQRYLRKMADSGCRFAVMEVSSQGLKLHRSDSILFDVGVFTNLGRDHIGP 232

Query: 219 -YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
             H+    Y + K  LF++            DD Y +E+ K A +      S   +    
Sbjct: 233 KEHKDMAEYAHYKSLLFQKCCFGIG----NIDDPYYREIFKDA-SCQVCTYSCRQKADVQ 287

Query: 278 HLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               +    N Q      V G+++      PGEF VYNA+ A  +C   GID  ++ + L
Sbjct: 288 ASDIMLVNRNGQLGTFFKVNGEEYAV--SAPGEFSVYNAVAAITVCRHYGIDQEIIRKAL 345

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           + +  VPGR E +  N RG  + +DYAH + SL+ IL+ +R     ++ V+FGCGG R  
Sbjct: 346 KTIR-VPGRVEVID-NDRGYLLLIDYAHNAMSLKNILETMRRYHPRQLWVLFGCGGGRSA 403

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452
            +R  MG +A   AD  ++T DNPR E+PE+I   I  G+      +    +R EA+R  
Sbjct: 404 ARRREMGCVAGKYADFTVITSDNPRYEEPERIMQTIEEGMKETKGQYQMMVDRKEAMRFM 463

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +      D+L++AGKGHE    +  G+     +  I +EIL 
Sbjct: 464 LAQGRPGDILILAGKGHEQYQEIK-GDYLPFNERKIAQEILA 504


>gi|126441714|ref|YP_001060540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
 gi|126221207|gb|ABN84713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
          Length = 514

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 223/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++       + F A    +  
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPADGLDSAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         AI+  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAIVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDSPTPAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + KL  V GR + +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ G
Sbjct: 383 IAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|167571354|ref|ZP_02364228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis C6786]
          Length = 514

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 221/482 (45%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG  F+A   +  D   FI  A+A+GA A++        D      S   
Sbjct: 30  QLHADTRSLQAGDAFIAYAVDGADNRPFIADALARGAAAVLYQPEGFAADGLEPATS--- 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 87  -LAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIAAALTALHQPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTLEAYEAAKTKLFA--WRGLRLAVVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIH--------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G   +             KV A        ++    D D      G F V N L   G
Sbjct: 263 AYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  +E L  V GR E +G    +    + VDYAHT ++LE  L  +R 
Sbjct: 323 TLLAADVPFDAALAEIENLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALEKTLDALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I  G
Sbjct: 383 IARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIAAG 442

Query: 436 IPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    +     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
          Length = 934

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 155/477 (32%), Positives = 236/477 (49%), Gaps = 21/477 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++  D+R + AG +F A VG   DG  +I QA+  GA AIV+ +       SAT   + P
Sbjct: 22  QLCLDTRQLSAGDVFFACVGLTGDGRDYIAQAVEAGAAAIVMQADDRA---SATPAIDVP 78

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V +    L       Y +  E+  ++AVTGT+GK+S   ++       G     IG 
Sbjct: 79  VLAVPDLPGQLGSIGHLWYDRPSEDMSVVAVTGTNGKTSCVQWLAAALNAEGTPCGTIGT 138

Query: 150 TST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 +       LTTP  + + ++L+ + + G   V++EASS GLDQ RLD ++++  
Sbjct: 139 LGVTLPNGNNLGGVLTTPDVLSMHRSLATMRAAGAQVVALEASSIGLDQGRLDQVRIVIA 198

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL  DH+DYH T   Y  AK  LF    P    A++  DD   K+++     A    
Sbjct: 199 AFTNLTHDHLDYHGTLDNYQRAKFSLFA--WPGLRGAVVNVDDPAGKQLVSTLPPASTLA 256

Query: 268 LSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S+ G+    I  + + A        +         L  L GE  V N L+  G+   +G
Sbjct: 257 YSISGHAEATIQAQDIHAGRYGLVFNVVTRDGAVQLLTRLVGEHNVANLLLVTGVLQQLG 316

Query: 327 IDSALVLEHLEKLHVVPGRFEF------VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            D + +   L  L  V GR +       VG       + VDYAHT ++L+  L  +R + 
Sbjct: 317 WDLSRIARVLSTLRSVEGRLQVVDALGAVGAAHGQAMVVVDYAHTPDALKRALLALRDVA 376

Query: 381 ---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               G++I VFGCGG RD+ KRP+MG+IA++LAD  ++T+DNPR E+P  I A+I  G+ 
Sbjct: 377 RVRGGKLICVFGCGGSRDRSKRPMMGRIAVELADEVVLTNDNPRLEEPLDIIAQIKSGMS 436

Query: 438 GFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  +R  AI ++I   +  DV+++AGKGHET      G++    D +  R  L
Sbjct: 437 TAARVELDRALAILSSIWAADAHDVVLLAGKGHETYQEF-QGQRVPFDDREWARFAL 492



 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 150/388 (38%), Gaps = 26/388 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R I  G +FVA+ G   DGH ++  A+  GA A VV    +            P
Sbjct: 499 SISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVVEHKDT--------AVALP 550

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
             V+ +TR+ L   ++    +H   ++AVTG++GK++    +  I ++S      +    
Sbjct: 551 QFVLGDTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQSPGEEASLATRG 610

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFT 210
            +++            I +   +  L+ Q    V     +H  +   L GI +       
Sbjct: 611 NLNN-----------DIGVPLTVLRLNRQHRAAVFELGMNHPGEISLLAGIAQPTVALVN 659

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N  R+H ++  T +A       + + +LP +  A+   DDAYS    + A      VL  
Sbjct: 660 NAQREHQEFMLTVEAVARENGTVID-MLPVDGIAVFPGDDAYSDLWAELAGTR--TVLRF 716

Query: 271 GYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G+   F  +  ++ A        I             PG   + NAL AA    A G+  
Sbjct: 717 GFSPDFDVYADQIHAEPTHTVCCIHTPIGSATLALASPGVHNLRNALAAAACAFATGVPL 776

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +++ LE  + V GR +          I   Y    +S+   +  +  +   R++V+  
Sbjct: 777 ESIVQGLEAFNPVSGRMQPHALAGGYQLIDDTYNANPDSVRAAIDVLAELDGKRVLVLGD 836

Query: 390 CGGDRDQG--KRPIMGKIALDLADIAIV 415
            G     G      +G  A +     ++
Sbjct: 837 MGEVGANGDAMHAEVGAYAHERGIDVLL 864


>gi|227504688|ref|ZP_03934737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198698|gb|EEI78746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 521

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 168/503 (33%), Positives = 251/503 (49%), Gaps = 28/503 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L        +      ++  S DS+ I AG +F A+ G +  G  F        A 
Sbjct: 4   DLQTLATIGGGRVIGDDSVTVSACSLDSKAIAAGGLFAALPGTRVHGAQFAGDTE---AA 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           AI+   A       A  R   PI+VV++ R  L L A+ +Y    E++  L VTGTSGK+
Sbjct: 61  AILTDEAGLQHLQEAGERR--PIIVVEDIRAVLGLIAAEIYEHPTEHLTVLGVTGTSGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  ++     +G     IG T T I+      +LTTP    L +  + +  +GVTHV 
Sbjct: 119 TTSYLLEAGLLHAGHKVGLIGTTGTRINREPVPTKLTTPEAPTLQELFARMRHEGVTHVV 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L+  R+ G +   G FTNL +DH+D+H T + YF AK  LF+      S A+I
Sbjct: 179 MEVSSHALELGRVRGTQFDVGGFTNLSQDHLDFHPTMEDYFAAKAALFDG-AQAASAAVI 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-------KQQVTISVEGKD 299
             DD + K + ++       ++S   +    + K+V +           Q V +S  G+ 
Sbjct: 238 CVDDDWGKRMAQQVAGKPLTLVSTTDEETAENTKQVISARQLGTEPTGAQHVELSFSGET 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           + F  P+PG+F + NA +AAG+  A+G+D+   L  +E++  VPGR E + +  +     
Sbjct: 298 YSFELPMPGKFNIANAALAAGMAAAVGVDTETFLNGVERV-AVPGRMESI-SRGQDFVAV 355

Query: 360 VDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           VDYAH   ++  +L  +R   + T GR+ VV G GGDRD  KRP+MG  A + AD+ +VT
Sbjct: 356 VDYAHKPAAIAAVLDTLRGQLSETGGRLGVVVGAGGDRDSSKRPLMGAAAAERADLVVVT 415

Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DDNPRSEDP  IRA ++ G           E G+R  AI   +E     D ++V GKGHE
Sbjct: 416 DDNPRSEDPAAIRAAVMAGAQKASQTADIREIGSRAAAIDAVVEWAQPGDAIIVVGKGHE 475

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV + E     D + +   L
Sbjct: 476 VGQIVGD-ETLHFDDREEVARAL 497


>gi|148238930|ref|YP_001224317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
 gi|166224792|sp|A5GJA5|MURE_SYNPW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|147847469|emb|CAK23020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
          Length = 499

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 147/499 (29%), Positives = 229/499 (45%), Gaps = 20/499 (4%)

Query: 9   KDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +    L+  + +  P       +  ++ DSR +  G +F+ + G + DG  F P A+A G
Sbjct: 3   QTLHALLKAVGLPVPAGVANATVTALTCDSRCVGQGSLFIGLPGERVDGGSFWPAALASG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPEN--ILAVTGTS 124
           A A+++         +        +LVV +   F     AS  + +      ++ VTGT+
Sbjct: 63  AAAVLI---GEQAAAAHPPAPGDSVLVVPDPVAFWAGELASAFWQRPSMRMELIGVTGTN 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    ++ + Q  G  +   G         +     TT +   L   L+     G  
Sbjct: 120 GKTTTTHLIEHLSQACGRPAALFGTLVNRWPGHSLTATHTTAAADRLQAQLAEALEGGTQ 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKE 241
             ++E SSH LDQ R+ G +     FTNL +DH+DYH + +AYF AK  LF    L+ + 
Sbjct: 180 VAAMEVSSHALDQQRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKALLFASPYLVGEG 239

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DD + +++  R      R          + +  +    N     +     +  
Sbjct: 240 PRAVVNVDDPWGRQLADRLGERAWRCSLA--HEADLTMADLRMTSNGVDGALRTPLGEGR 297

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGR 357
           F  PL G F + N L A G  +  G+   L+L  L     VPGR E +            
Sbjct: 298 FHSPLVGRFNLMNVLQAVGALLQQGLPLPLLLNALPSFRGVPGRMERIVLTGSAAEDHPA 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + L   L+  R    G++I VFGCGGDRD+GKRP M  IA  LAD  +VT 
Sbjct: 358 VLVDYAHTPDGLRNALEACRPFVRGQLICVFGCGGDRDRGKRPQMAAIAAALADQVVVTS 417

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP +I  +++ G+P   E   + +R +AI  AI      D++++AGKGHE   I
Sbjct: 418 DNPRTEDPGQILDDVVAGLPADAERQVEVDRAKAIALAIAQARCGDLVLIAGKGHEDYQI 477

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +   EK    D +   + L
Sbjct: 478 LGT-EKVHFDDREQAEQAL 495


>gi|167618576|ref|ZP_02387207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis Bt4]
          Length = 514

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 222/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +FVA   +  D   FI  A+A+GA A++       + F A       
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAAGLDPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T  AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLHCAVVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  +E+L  V GR + +G    +    + VDYAHT ++LE  L+ +R 
Sbjct: 323 TLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLEALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P+KI  +I+ G
Sbjct: 383 IAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|83720483|ref|YP_441661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|257137830|ref|ZP_05586092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|83654308|gb|ABC38371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
          Length = 514

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 222/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +FVA   +  D   FI  A+A+GA A++       + F A       
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAAGLDPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T  AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLHCAVVNRDDPAGRRLLANLVGR-VRTI 262

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  +E+L  V GR + +G    +    + VDYAHT ++LE  L+ +R 
Sbjct: 323 TLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLEALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P+KI  +I+ G
Sbjct: 383 IAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 490

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 155/507 (30%), Positives = 239/507 (47%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+ KD+P  +   SI        +I  V   ++ +Q G IF+   G K  G  F+
Sbjct: 1   MQLAELL-KDWPCSVTGGSIR------TEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+A+GA AIV   + SL      I    P + V NT  FLS  +++L     E   ++
Sbjct: 54  KEALARGAAAIVSEESISLP----IIDKEIPFVWVPNTALFLSYASAKLAAFPAEALTVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP----SPIYLAKAL 174
           A+TGT+GK++V+ FV Q+       +  IG      +  +               L   L
Sbjct: 110 AITGTNGKTTVSHFVSQLLNALHKHAAVIGTVGFFINGEKQQTAYEQLTTLQAKELHPIL 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +GVTHV +EASS GL QHRLD   +  G F NL  DH++ H   +AY  AK RL 
Sbjct: 170 KQCVQKGVTHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLA 229

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293
           +         ++  DD + + V        C   S G+     +H++ V     K  + +
Sbjct: 230 D----LSKKLVLNGDDNFCRSVGIYDKKKSC---SFGFDNHNDLHIQIVSESVGKTVLCL 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +     P  G++ V NA+ +      +G+    ++ H+  L +  GR E +  N 
Sbjct: 283 QTSASEHIVEIPFVGKYHVQNAVASLMAVWRLGVPMEDIVGHMWSLRLPEGRLEKI-ENP 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  +YVDYAHT+ +L+ +L+      S  I +VF CGG+RD+ KR  MG +A   AD+ 
Sbjct: 342 LGIDVYVDYAHTAEALQAVLQTFD--HSKTIYLVFSCGGNRDKAKRFAMGAVASKYADVI 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPR EDP  I   II G      +    +R  AI  A+    K D+++VAGKGHE
Sbjct: 400 YLTTDNPRDEDPIVINESIIAGFTEQQYYEIYLDRKLAIHQALAKAEKGDIVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               + N +K    D   +++    ++
Sbjct: 460 QTQQIKN-QKFPFSDQQCVKDYFASLI 485


>gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 512

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 148/511 (28%), Positives = 245/511 (47%), Gaps = 35/511 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +S DSR   A   F+A+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAKGT 61

Query: 69  EAIVVS---SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTS 124
           + I+        S+   S        I  V+N ++ LS  A   Y  K P+NI+ +TGT+
Sbjct: 62  KLILSDKLPRQSSIATSSVAEGELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTN 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S++S++ Q+ +  G  S  +G     I    Q++  TT   + L + +SY   +   
Sbjct: 122 GKTSISSYIAQLQKLIGQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISY--YKNYQ 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++ +E SSH LDQ R +G+      F+NL  DH+DYH+T   YF AK +LF+        
Sbjct: 180 NLVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FRSLKK 237

Query: 244 AIIYADDAYSKEVMKRAHNAGCR-----------------VLSVGYQGK--FIHLKKVCA 284
           A+I  DD Y +++ +  + +  R                 +++V  + +   I+++    
Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSRRADIYIESKSI 297

Query: 285 IHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            + +    + +  K    +   L GEF + N  ++             +LE++ KL  V 
Sbjct: 298 ENMQTSFDLYISQKYMGTYQTSLVGEFNLMNLGLSLAALDDSS-TREQLLENISKLKPVK 356

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E +     G +I +DYAHT ++LE  L+ +       +  +FGCGG+RD  KRPIM 
Sbjct: 357 GRMEVIAL-VNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTKRPIMA 415

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQD 460
           +IA + A   ++T+DN R E  E I  +I  G           +R EAI+  IE     D
Sbjct: 416 QIAEEYASKIVITEDNNRFESIESIFDDIKKGFSHPDKHTFIDSREEAIKYTIENSKAND 475

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           V+++AGKGHE   +  NG K+   + D+I  
Sbjct: 476 VILLAGKGHECY-LDKNGIKEYFDERDVINR 505


>gi|118618800|ref|YP_907132.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium ulcerans Agy99]
 gi|118570910|gb|ABL05661.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium ulcerans Agy99]
          Length = 559

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 151/492 (30%), Positives = 223/492 (45%), Gaps = 17/492 (3%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++           +  I  ++  ++ +Q G +F A+ G+   G      AI +GA A++ 
Sbjct: 66  VLADGPHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHTADAIERGAVAVLT 125

Query: 74  SSA-YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
             A  +       +    P+LV    R  L   A+ +YG   + +  + +TGTSGK++  
Sbjct: 126 DPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVGITGTSGKTTTT 185

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V+   + +G  +  IG     I      + LTTP    L   L+ +  +GV  V +E 
Sbjct: 186 YLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPTLQAMLAAMVERGVDTVVMEV 245

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYA 248
           SSH L   R+DGI+   G FTNL RDH+D+H T   YF AK  LF+          ++  
Sbjct: 246 SSHALTLGRVDGIRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPASALRGHSVVVCI 305

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD   + +  RA      V + G    +            Q+ T +   G         P
Sbjct: 306 DDEAGRAMADRA-GVAITVSATGQPAHWRATDVAPVGAGGQEFTALDPAGVGHRVRIGSP 364

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G + V N L+A  +  A+G+        L +   VPGR E V    +     VDYAH   
Sbjct: 365 GHYNVSNCLLALAILDAVGVSPEQAAPGLRE-TRVPGRLEQVD-RGQDFLALVDYAHKPG 422

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +L  +R     R+ VVFG GGDRD GKR  MG+IA +LAD+ +VTDDNPR EDP  
Sbjct: 423 ALREVLSTLRN-PQRRLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTDDNPRGEDPGA 481

Query: 428 IRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           IR  I+ G          +E  +R EAI  A++     DV+++AGKGHET       E +
Sbjct: 482 IRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHETGQ-RGGAEVR 540

Query: 482 MSVDCDIIREIL 493
              D   +   L
Sbjct: 541 PFDDRVELARAL 552


>gi|167580468|ref|ZP_02373342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis TXDOH]
          Length = 514

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 224/482 (46%), Gaps = 27/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +FVA   +  D   FI  A+A+GA A++       + F A       
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVLYQP----EGFPAAGLDPAT 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 86  SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T  AY  AK +LF         A++  DD   + ++        R +
Sbjct: 206 FTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLHCAVVNRDDPAGRRLLANLAGR-VRTI 262

Query: 269 SVGY--------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G           + +    V A        ++    + D      G F V N L   G
Sbjct: 263 AYGIDAPAQAADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVLG 322

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  +E+L  V GR + +G    +    + VDYAHT ++LE  L+ +R 
Sbjct: 323 TLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLEALRP 382

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P+KI  +I+ G
Sbjct: 383 IAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQKIIDQIVAG 442

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R  
Sbjct: 443 MRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARLA 501

Query: 493 LG 494
           L 
Sbjct: 502 LA 503


>gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 492

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 146/481 (30%), Positives = 238/481 (49%), Gaps = 24/481 (4%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P ++ +  I   ++D+R ++ G +F AI G    G  +   A+A GA A++  +     D
Sbjct: 20  PAEYADVAITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAVAVITDT-----D 74

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR 139
            +  + ++ P++++ +  + +   A+ +YG   + +   AVTGT+GK++ A  +  I   
Sbjct: 75  GADFVTADVPVIILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAFMIDHILNT 134

Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G ++  IG  +  I+      +LTTP P  L   L+ L  +G T + +E SSH + Q R
Sbjct: 135 LGETTGLIGTVAVKIAGQEIPAQLTTPQPADLQAMLAALVERGGTSLVMEVSSHAIAQGR 194

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ I      FTNL +DH+DYH T   YF AK  LF E   +   AI   D  + +E++K
Sbjct: 195 IESINYSVAGFTNLTQDHLDYHNTLTEYFEAKALLFTEKFSRVGVAIT--DTPWGEELVK 252

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R +    RV ++  Q       +     +                  LPG+F + NA +A
Sbjct: 253 RGNE---RVAALASQPDQPAGWRFTGQADGTLTLRGENWGTITTSTNLPGDFNIANAALA 309

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPG----RFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
             +    G  +  +   L   + V      R E V    R   I VD+AH  ++L   ++
Sbjct: 310 IAMVAKAGYSAEAISAALLASNGVNPQVPGRMEVVAEAPR---IVVDFAHNEDALTKAIE 366

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R  T G +IV+ G  GDRD  KRP+M K   + AD+ ++TDD+P SEDP  IRA++I 
Sbjct: 367 ALRPSTQGNLIVITGSAGDRDVTKRPLMAKTVAERADVLVITDDDPHSEDPAHIRADLIA 426

Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           GIP    +IE  +R EAI   +     +D +++AG+GHET+  + NG      D ++ RE
Sbjct: 427 GIPTDTNWIEIADRREAITAMVTDACAEDTILIAGRGHETIQDM-NGTLVNLDDREVARE 485

Query: 492 I 492
            
Sbjct: 486 A 486


>gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 477

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 245/494 (49%), Gaps = 28/494 (5%)

Query: 11  FPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E++  ++    +   E+ I  V+++S+ ++ G+ FVAI GN EDGH +I  AI  GA 
Sbjct: 4   FEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIENGAS 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            I+ +   + ++           + V++ R  L+  +++L     + +  ++VTG++GK+
Sbjct: 64  LIIHTEDIAYKE-------GISYIKVEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  V  +       +  IG   + I         TTP    + K ++    + + ++S
Sbjct: 117 TTSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYLS 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E+SSHGLDQ R+ G+ +  G FTNL ++H+DYH+T   YF AKM LF++        + 
Sbjct: 177 LESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAKMILFDQ----AKHTVA 232

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y     K+A       ++ G   +    +    +    +V+  V+G +F  +   
Sbjct: 233 NIDDPYG----KKAKELYPNTITYGINNENADYRAENVVKKDGKVSYEVKGVEF--ILNT 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             +++VYN L A  +   +G     V + ++K + V  RFE++  N+ G  I +D+AHT 
Sbjct: 287 IADYEVYNTLAATAVVCDMGASLEEVKDAMKKFNGVASRFEYM-ENNLGLNIIIDFAHTP 345

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + E + K++      +I  V+G  GDR++  R   GK   D    ++VT D+P+ +  E
Sbjct: 346 FAYECLFKSVPQ--GHKIYAVYGINGDRNKEFRVSTGKACADNDVFSVVTTDDPKFDTVE 403

Query: 427 KIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I  +II GI      ++   +R +AI+ AI   NK D + + GKG E    +   EK  
Sbjct: 404 NISKDIIEGIKSKGGEYVNILDREDAIKYAITHANKGDFIFLLGKGEENFLKLKGNEKTP 463

Query: 483 SVDCDIIREILGLI 496
             + + ++E+L  I
Sbjct: 464 YSERETLKEVLESI 477


>gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 572

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 141/496 (28%), Positives = 230/496 (46%), Gaps = 24/496 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL ++L +      E  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 66  LGELADRLGVEAAGTGE--VTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAAA 123

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++   A + +       +  P+LV ++ R  +   A+ +YG+    +L   +TGTSGK++
Sbjct: 124 VLTDPAGAER----AAATGLPVLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTT 179

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G  +  IG     I      +  TTP    L    + +  +GV  V++
Sbjct: 180 TAYLVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 239

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF           + 
Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGV--VN 297

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306
            DD Y + ++  +        + G+     H + V         T +  +G+      PL
Sbjct: 298 FDDEYGRRLLTESGVPVTSFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 357

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       G+D  +  + +  +  VPGR E V    +     VDYAH +
Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQIAADGIAAVPGVPGRLERVDA-GQPYLAVVDYAHKT 416

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+++R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 417 DAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPL 476

Query: 427 KIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I A ++ G    +    R + +           A+      D ++VAGKGHE    + +
Sbjct: 477 AILAAMLSGAAE-VPVHERGDVLVDADRASAIAAAVARAEPGDTVLVAGKGHEQGQDI-H 534

Query: 478 GEKKMSVDCDIIREIL 493
           G  +   D  ++   +
Sbjct: 535 GVVRAFDDRKVLHAAI 550


>gi|183983188|ref|YP_001851479.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
 gi|183176514|gb|ACC41624.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
          Length = 521

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 153/492 (31%), Positives = 225/492 (45%), Gaps = 17/492 (3%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++           +  I  ++  ++ +Q G +F A+ G+   G      AI +GA A++ 
Sbjct: 28  VLADGPHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHAADAIERGAVAVLT 87

Query: 74  SSA-YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
             A  +       +    P+LV    R  L   A+ +YG   + +  + +TGTSGK++  
Sbjct: 88  DPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVGITGTSGKTTTT 147

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V+   + +G  +  IG     I      + LTTP    L   L+ +  +GV  V +E 
Sbjct: 148 YLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPALQAMLAAMVERGVDTVVMEV 207

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYA 248
           SSH L   R+DGI+   G FTNL RDH+D+H T   YF AK  LF+          ++  
Sbjct: 208 SSHALTLGRVDGIRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPASALRGHSVVVCI 267

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD   + +  RA  A   V + G    +            Q+ T +   G        LP
Sbjct: 268 DDEAGRAMADRA-GAAITVSATGQPAHWRATDVAPVGAGGQEFTALDPAGVGHRVRIGLP 326

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G + V N L+A  +  A+G+        L +   VPGR E V    +     VDYAH   
Sbjct: 327 GHYNVANCLLALAILDAVGVSPEQAAPGLRE-TRVPGRLEQVD-RGQDFLALVDYAHKPG 384

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +L  +R     R+ VVFG GGDRD GKR  MG+IA +LAD+ +VTDDNPR EDP  
Sbjct: 385 ALREVLSTLRN-PQRRLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTDDNPRGEDPGA 443

Query: 428 IRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           IR  I+ G          +E  +R EAI  A++     DV+++AGKGHET       E +
Sbjct: 444 IRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHETGQ-RGGAEVR 502

Query: 482 MSVDCDIIREIL 493
              D   +   L
Sbjct: 503 PFDDRVELARAL 514


>gi|116329173|ref|YP_798893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330219|ref|YP_799937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282018|sp|Q04V91|MURE_LEPBJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122283045|sp|Q04Y85|MURE_LEPBL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116121917|gb|ABJ79960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123908|gb|ABJ75179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 500

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 163/511 (31%), Positives = 249/511 (48%), Gaps = 30/511 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV---GNKEDGH 57
           MKL +L++ +FPEL               I  + SDSR      IF  +    G K+   
Sbjct: 3   MKLTNLLH-EFPELKLGSLPSGKNPDSVPIEYIQSDSRKTNPEDIF-CVPESIGTKK--G 58

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            FI       A  I++  + ++   S+ I         ++  +     AS L G   + +
Sbjct: 59  EFISNTK---ASVILLHRSSNISIDSSKIVLEC----EEDPEQLQGRIASFLLGHPSKTL 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
             +AVTGT+GK+S+ + +  + +  G     IG         + D   TTP    L   L
Sbjct: 112 EIVAVTGTNGKTSLTNILFALAKDQGKICGLIGTIGVKFGDRSIDTGYTTPDASSLNLIL 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  +GVT V +EASSHGL   R+ GI L AG FTNL +DH+D+H   + YF +K RLF
Sbjct: 172 KQMKDEGVTTVFMEASSHGLKLGRIGGISLKAGVFTNLTQDHLDFHSDMEDYFESKFRLF 231

Query: 235 EELLPKESPAII-----YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           E L   +SP  +        +   +++     +   + L  G  G++  +          
Sbjct: 232 EILDVSKSPFAVLDYSSPGGNELHRKIRNNLPDLPIKALD-GIGGEYK-VSNPFLTLQGT 289

Query: 290 QVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +S+ G +       L G F V N  +A    + +G+D   +   L+++  +PGRF+ 
Sbjct: 290 SYVLSLPGNRSQTISTNLLGSFNVRNTALAFLTGLGLGLDPKGMFSSLKEIPQIPGRFQI 349

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +  R     VDYAHT ++LE I++++R     R+I +FGCGGDRD+ KRP M +IA +
Sbjct: 350 VYSKDRSRMAVVDYAHTPDALENIIRSVRNSRPKRLITLFGCGGDRDKTKRPKMARIAEE 409

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF---IEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+D  I+T DNPRSE PE I  EI  G  PGF   + + +R  AI   + +L +   L+V
Sbjct: 410 LSDQVILTSDNPRSEKPEAILDEIQSGFSPGFTPLLREVDRARAISEGVGILPEGGCLLV 469

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           AGKGHE   I+   EK+   D + +R+  GL
Sbjct: 470 AGKGHEEYQIIGK-EKRHFSDVEEVRKAFGL 499


>gi|72161509|ref|YP_289166.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
 gi|71915241|gb|AAZ55143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
          Length = 534

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 143/482 (29%), Positives = 222/482 (46%), Gaps = 24/482 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  V+ DSR ++ G ++VA+ G +  G  F  QA   GA A++   A     +     
Sbjct: 54  VVVTGVTHDSRAVRPGDLYVAVQGQRVHGAKFAAQAARAGAAAVLTDPAG----YDRAAA 109

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS--VASFVQQICQRSGLSSF 145
           +  P++ V + R  L   A+ +YG     +L +  T       V+  V+   + +G+ + 
Sbjct: 110 TRLPVITVPDPRSRLGDVAAWIYGHPARELLLIGTTGTSGKTTVSYLVESGLREAGMRTG 169

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +     D+ LTTP    L    + +  + V   ++E SSH L   R+ G++ 
Sbjct: 170 LVGTVEIRVDDERIDSSLTTPEATELHGLFALMRERDVAGAAMEVSSHALALGRVAGVRY 229

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+D+H     YF  K RLF         A++  DD++ + ++ R    G
Sbjct: 230 DVAVFTNLSQDHLDFHADLHDYFETKARLFTP--EFAKVAVVNRDDSFGRTLIDRITEQG 287

Query: 265 CRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAA 319
              ++     G      +   V       +  +   G    D    LPG F V NA+ A 
Sbjct: 288 AIPVTTFSATGDTAADWYATDVVLEAGGSRFRVVGPGGMAMDASVRLPGPFNVANAMAAI 347

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              I  G+     +  +     VPGR E V    +     VDY+H   ++E +L ++R I
Sbjct: 348 VALIEAGVPLPTAVAGVAAARGVPGRMERVD-EGQDFTAIVDYSHKPGAIEAVLTSLRPI 406

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
           T GR+ +V GCGGDRD+GKRP+MG+ A  LAD  I+TDDNPRSEDP  I   ++ G+   
Sbjct: 407 TEGRLTIVVGCGGDRDRGKRPLMGEAAARLADAVILTDDNPRSEDPVTIITSMLEGVAKV 466

Query: 439 -------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                     + +R  AI  A+      DV+VVAGKGHE    V +       D D++RE
Sbjct: 467 PVAQRARITVEPDRRTAIELAVTRAQPGDVVVVAGKGHERGQHVGD-RILPFDDRDVLRE 525

Query: 492 IL 493
            +
Sbjct: 526 AI 527


>gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 476

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 135/500 (27%), Positives = 226/500 (45%), Gaps = 34/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++ ++ K+   +   +        +++I  +SSDSR I+  +IF+A  G + DGH +I
Sbjct: 1   MKIEKIL-KEISYISKNIQ------NDKEIIGISSDSRQIKENYIFLANKGYEFDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI  GA  I+ ++            S    + V + R  L+  ++ L     +   ++
Sbjct: 54  DSAIKNGANTIIYTND------DINFESGINYIKVKDQRLALAKISNLLSNYPSKSMRMI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A+ +  +  + G     IG     + +       TTP    L + L   
Sbjct: 108 GVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILIKA 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  +E SSHGL   R  GI    G FTNL  +H+D+H+T   YF AKM L    
Sbjct: 168 KKENIKNAVMETSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAKMIL---- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      ++  DD Y K   +   +A    ++   + +  ++K+V        +  +V G
Sbjct: 224 LNNSKKQVVNLDDDYGKRAKEIFKDALTISINEDSKYRAKNIKRVDL-----GLEFTVNG 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F       G++ +YN+L A  +   +G     + + LE    V  RFEF+  N  G  
Sbjct: 279 VKFH--LNRFGQYDIYNSLCAIAIANDLGYKLEEISKALEDFTGVKSRFEFI-ENKLGIN 335

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VD+AHT  + E + K++      +I  V+G  GDR    R  +GKI+      +++T 
Sbjct: 336 IVVDFAHTPEAFENLFKDLP--KDKKIYAVYGINGDRTYDIRKAVGKISAKYGVFSVITT 393

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P+ +  E I  +I  G+       I   +R EAI+  I    K D + + GKG E   
Sbjct: 394 DDPKFDTFENISQQIKEGVDENKGECIIIKDRKEAIKYGISHAKKGDFVFMLGKGEEKFL 453

Query: 474 IVTNGEKKMSVDCDIIREIL 493
                 K    + + IRE+L
Sbjct: 454 KFNGNIKTYYSERETIREVL 473


>gi|294828010|ref|NP_712228.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
 gi|302393763|sp|Q8F4J4|MURE_LEPIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|293385856|gb|AAN49246.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 504

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 160/511 (31%), Positives = 250/511 (48%), Gaps = 24/511 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV---GNKEDGH 57
           MKL  L+ K FPE+  +           +I  + SDSR      IF  +    G+K+   
Sbjct: 1   MKLTSLLLK-FPEIKLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIF-CVADSIGSKKK-- 56

Query: 58  LFIPQAIAQGAEAIVVSSAYS-LQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115
            FI  A    A  I++ +  + L D    + S+   L  + +  +     AS L G   +
Sbjct: 57  EFISNAK---ASLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSK 113

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
           ++  +AVTGT+GK+S+ + +  + +  G++   IG           D   TTP    L  
Sbjct: 114 DLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNL 173

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +  +G+T V +EASSHGL   R++GI + AG FTNL +DH+D+H   + YF +K R
Sbjct: 174 ILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFR 233

Query: 233 LFEEL-LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQ 289
           LFE L   K + A++        ++  +  N    +L        +   +  +       
Sbjct: 234 LFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGT 293

Query: 290 QVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              + + G ++      L G F V N  +A    I IG+D   +   LEK+  +PGRF+ 
Sbjct: 294 SYVLGLPGNQERKISTNLLGSFNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQI 353

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +  R     VDYAHT ++LE I++++R      +I +FGCGGDRD+ KRP M +IA +
Sbjct: 354 IYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLITLFGCGGDRDRTKRPKMARIAEE 413

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+D  I+T DNPR+E PE I  EI  G        + + +R +AI   I  L +   L+V
Sbjct: 414 LSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLV 473

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           AGKGHE   I+   EK+   D + +++  GL
Sbjct: 474 AGKGHEEYQIIGK-EKRHFSDVEEVQKAFGL 503


>gi|45657730|ref|YP_001816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|59798331|sp|Q72R81|MURE_LEPIC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|45600970|gb|AAS70453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 506

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 160/511 (31%), Positives = 250/511 (48%), Gaps = 24/511 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV---GNKEDGH 57
           MKL  L+ K FPE+  +           +I  + SDSR      IF  +    G+K+   
Sbjct: 3   MKLTSLLLK-FPEIKLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIF-CVADSIGSKKK-- 58

Query: 58  LFIPQAIAQGAEAIVVSSAYS-LQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115
            FI  A    A  I++ +  + L D    + S+   L  + +  +     AS L G   +
Sbjct: 59  EFISNAK---ASLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSK 115

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
           ++  +AVTGT+GK+S+ + +  + +  G++   IG           D   TTP    L  
Sbjct: 116 DLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNL 175

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +  +G+T V +EASSHGL   R++GI + AG FTNL +DH+D+H   + YF +K R
Sbjct: 176 ILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFR 235

Query: 233 LFEEL-LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQ 289
           LFE L   K + A++        ++  +  N    +L        +   +  +       
Sbjct: 236 LFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGT 295

Query: 290 QVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              + + G ++      L G F V N  +A    I IG+D   +   LEK+  +PGRF+ 
Sbjct: 296 SYVLGLPGNQERKISTNLLGSFNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQI 355

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +  R     VDYAHT ++LE I++++R      +I +FGCGGDRD+ KRP M +IA +
Sbjct: 356 IYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLITLFGCGGDRDRTKRPKMARIAEE 415

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+D  I+T DNPR+E PE I  EI  G        + + +R +AI   I  L +   L+V
Sbjct: 416 LSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLV 475

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           AGKGHE   I+   EK+   D + +++  GL
Sbjct: 476 AGKGHEEYQIIGK-EKRHFSDVEEVQKAFGL 505


>gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 508

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 130/509 (25%), Positives = 230/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  IV S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVIVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I+    +    + ++++  +
Sbjct: 471 LGKGHESS-IIYKNREVFWNEQEVVKNAI 498


>gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
 gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
          Length = 477

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 132/494 (26%), Positives = 229/494 (46%), Gaps = 28/494 (5%)

Query: 11  FPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F ++I+ +S    +   ++ I +V++DSR +  G IFVAI G+  DGH +I  AI +G+ 
Sbjct: 4   FEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEKGSS 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
            I+ ++    ++           + V + RK L+  ++ +Y    +   ++AVTG++GK+
Sbjct: 64  LIIHTADIKREE-------GISYIKVTDPRKTLAQISNLIYDFPSKKMDLVAVTGSNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  +  +       S  IG   + +         TTP    + + L+    + + H++
Sbjct: 117 TTSRLISFLMGEIFGESASIGTNNAVVGDEIIPTSNTTPDITEVNRILAKCLDKNIHHLA 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASSHGLDQ RL G+ +  G FTNL  +H+DYH+T   YF AKM LFE         I 
Sbjct: 177 LEASSHGLDQKRLYGLDISYGIFTNLSEEHLDYHKTMDNYFKAKMILFEN----AKTTIA 232

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y     K+A       ++     K    +         +++  ++G +F      
Sbjct: 233 NIDDPYG----KKAKELFSNTVTFAIDEKNADYRAEDIRKEDGKISFKIKGCEFVIRK-- 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
              +++YN L A      +G     +    +K   V  RFE++  N  G  I +D+AHT 
Sbjct: 287 IANYEIYNTLAACACLNQMGASMEEIAAAYKKFKGVKSRFEYI-ENDLGINIILDFAHTP 345

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + E + +++        I VFG  GDR+   R ++G         A++T D+P+ +D +
Sbjct: 346 RAYEALFESVPEGAKK--IAVFGINGDRNAHFRRLIGNACGKFDTFAVLTTDDPKFDDID 403

Query: 427 KIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I  EII G+      ++ K +R +A+  A       D + + GKG E        EK  
Sbjct: 404 HINEEIIVGLDDYKQAYVIKKDRTDAMEYAFRKARPGDYVFLLGKGEENFMKYHGNEKTP 463

Query: 483 SVDCDIIREILGLI 496
             + + I++ L  I
Sbjct: 464 YSERETIKKALARI 477


>gi|213024666|ref|ZP_03339113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 461

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 153/453 (33%), Positives = 229/453 (50%), Gaps = 13/453 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  +    +A        ++    G+++  + V        +  +    + +   
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N L+A    +A+G     +L+   +L  V GR E V T      + VDYAH
Sbjct: 302 CLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+
Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEE 420

Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIE 454
           P  I  +I+ G+    +      R EA+  AI 
Sbjct: 421 PRAIINDILAGMLDAGQVRVMEGRAEAVTNAIS 453


>gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
          Length = 489

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 141/494 (28%), Positives = 222/494 (44%), Gaps = 29/494 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L+ K   + +     FP       IN+V  DSR   +  +FVA  G   D H FI
Sbjct: 1   MKTSELLSKIKAKKL--YGTFPEH-----INKVVVDSRAADSESVFVASHGYTVDSHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  + QG   IVV       D           +VV +T +   +F   +       +   
Sbjct: 54  PNVVRQGCRMIVVDHYIEGLDIG--------QVVVRDTLQAARIFTQHVMDFPSHKLTTY 105

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
             TGT+GK+SVA+ +  + +   ++S  +G      +        +TP  I L + +++ 
Sbjct: 106 GVTGTNGKTSVATMIHHLHRALNINSAYLGTNGFQYNEEVAKGANSTPETITLNQHIAHA 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG   +++E SSHGL   R DG+ +    FTNL +DH+D+H T + Y   K  LF +L
Sbjct: 166 VEQGAQSMAMEMSSHGLALGRTDGVDIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQL 225

Query: 238 ---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
                ++  A++  DD YSKE++  +      V++ G  Q   I    +    +    T+
Sbjct: 226 GNDFKQQKYAVVNGDDDYSKELIIASPR---EVITYGIEQNTDIKATNIKESIHGIAFTL 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + +   P  G F +YN L A       G   + + E  + L  V GR E V   +
Sbjct: 283 ETPDGNVEITCPYIGRFNIYNMLAALTALWTQGHALSALAEAAQSLPPVEGRLE-VLDRN 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + +DYAHT + +  ++  +     G++I + G  G+RD  K P MG +A   AD  
Sbjct: 342 LPIDLVIDYAHTPDGMNKLIDALEPFKRGKMIFLIGMAGERDLSKTPEMGAVACR-ADYV 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNP ++DP K+   +  G     ++   +R E IR AI M    D++V+A KG E 
Sbjct: 401 IFTPDNPANDDPRKLTDALESGATHTNYVSFLDRAEGIRHAIAMSEPGDMVVLASKGREP 460

Query: 472 VHIVTNGEKKMSVD 485
             I+ N  K    D
Sbjct: 461 YQIMENYIKVPHRD 474


>gi|313673688|ref|YP_004051799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940444|gb|ADR19636.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 484

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 135/502 (26%), Positives = 232/502 (46%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++DL+     + ++   ++     +  ++ +S +++ I+    F+ + G   D +  I
Sbjct: 1   MLVRDLLKGIPVKWVSDDKLY-----DIDVDNISFNTKDIKPNSAFLLVKGISFDPYEMI 55

Query: 61  PQAIA-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
            +    +  +  +       +          P ++V+N R+   +     +      I  
Sbjct: 56  DEIFDSKKVKLFITEKPLPEK----------PHILVENARRTFGMICRNFFNIDFSKIKS 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    +  I + SG  + +IG T   I     +   TTP    + + ++ 
Sbjct: 106 IGITGTNGKTTTNYLIDSILRVSGYKTIRIGTTEYVIVDEKIEANNTTPGIYDIFEMVAK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +G + V +E SSH LDQ R+ G+      FTNL  DH+DYH+T + Y+ +K +LF +
Sbjct: 166 GVKKGASAVCMEVSSHALDQDRVYGLNFDVAVFTNLTGDHLDYHKTMEHYYQSKKKLFTK 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K   A I  D  Y K +      A     S       + +  V    +     +++ 
Sbjct: 226 EYSKN--AAINIDYDYGKRLYNEVEIAK---YSFSKGKGDVGVVDVSYSLDGINCRVNIG 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +       L G   + N L A      +GI    ++  +E+   VPGR E       G 
Sbjct: 281 DEVISLNSHLVGRHNLENILGAVTATYILGISKDDIIRGVEQFKNVPGRLEKF--EKNGA 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             +VDYAHT ++L+ +L+ ++    GR+I VFGCGGDRD+ KRP M K+A   +DI IVT
Sbjct: 339 YFFVDYAHTDDALKNVLEALKGFKKGRLITVFGCGGDRDRTKRPRMAKVAEVYSDIVIVT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP  I  EI+ G       +   +R  AI+ A +     D++++AGKGHE   
Sbjct: 399 SDNPRTEDPNAIIDEILTGFENRSKVLVDPDRRIAIKKACDEAKAGDIVLIAGKGHEDYQ 458

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
           I+    K    D + + + LG+
Sbjct: 459 IIGK-TKYHFDDREEVAKNLGV 479


>gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
 gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
          Length = 496

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 142/515 (27%), Positives = 243/515 (47%), Gaps = 48/515 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         E  + L I  +  + +   +++  +++++    +FV I G   D H  
Sbjct: 1   MKL--------IENTDGLDIDIISGKFDDDFSDLVFNTKNVVKDCLFVCIKGRNFDTHDV 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I + +  GA+A+VV             R +  ++ VD+TR  L+  ++  +G   +   I
Sbjct: 53  IDEIVKLGAKAVVVERNIK--------RDDICVIKVDSTRAALARLSAAYFGHPAKKMKI 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT GK++ +  ++++ +++      IG    T+    +    TTP    L K    
Sbjct: 105 IGITGTKGKTTSSYMLKKLLEQNA-KVGLIGTNGITVGDIHRSTLNTTPESYELQKTFKE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234
               G  +V +E SS  +   R++GIK   G FTN+  DHI  D H+    Y   K   F
Sbjct: 164 CLDAGCEYVVMEVSSQAVMLKRIEGIKFYIGIFTNISPDHIGPDEHKDFTEYLMYKSLFF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-----IHLKKVCAIHNKQ 289
           ++        ++ ADD +S  +++++ +        G  G F      ++ K   +    
Sbjct: 224 KQC----EKTVVNADDEHSAYILEQSTSDEK--YEFGKCGDFVINNINYISKKDFLGTSF 277

Query: 290 QVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            ++ S   KD        D L  +PGEF VYNAL A    I   +  A++   L+ +  V
Sbjct: 278 CISCSKNVKDKYRVSEVGDILVGIPGEFNVYNALSALSAAIICRVKPAVLQTALKDIK-V 336

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V  +S   +I +DYAH + S E ++K +R     R++VVFG GG+R + +R  M
Sbjct: 337 NGRME-VAYSSHDIKIIIDYAHNAISTESLIKTLRRYEPKRLVVVFGSGGNRSKDRRYSM 395

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNK 458
           G+I   +AD ++VT DN R E  E I A+I+  +      +I   +R EAI  A+E    
Sbjct: 396 GEICGKMADFSVVTADNSRYEKTEDIIADIVEKLSETGGKYITVPDRKEAIFYAMENSKP 455

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            D++ + GKGHE    + +G +   +D +++ E L
Sbjct: 456 GDIIAIIGKGHEDYQEI-DGVRHHFLDREVVEECL 489


>gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
 gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
          Length = 508

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 132/509 (25%), Positives = 230/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    N  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSF--TYSLKSSKADFFVSFIDEKTNSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
          Length = 508

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 131/509 (25%), Positives = 231/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAIKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           DI I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DIIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I+    +    + ++++  +
Sbjct: 471 LGKGHESS-IIYKNREIFWNEQEVVKNAI 498


>gi|78212334|ref|YP_381113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9605]
 gi|78196793|gb|ABB34558.1| UDP-N-acetylmuramyl-tripeptide synthetases [Synechococcus sp.
           CC9605]
          Length = 501

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 146/499 (29%), Positives = 239/499 (47%), Gaps = 21/499 (4%)

Query: 14  LINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++   I  P       +  +++DSR +  G +F+ + G + DG  F  QA+        
Sbjct: 8   LLSDAGIAVPPGLVNPGLGAITTDSRRVGPGTLFLGLPGERVDGGTFWAQALE---AGAA 64

Query: 73  VSSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
            +   +    +    ++ P++V+ +   + +   A+  +  HP   +A+ G +G +   +
Sbjct: 65  AAVIGAEAAAAQPPGADAPVVVIQEPVARRIGEIAAAFW-DHPCRCMALIGVTGTNGKTT 123

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSV 187
               I   +  +   +G   T+ +           TT     L   L+  +S G    ++
Sbjct: 124 TTHLIEHLAASAGQSVGLFGTLVNRWPGQSITATHTTAFADLLQGQLAEAASAGCGLAAM 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAI 245
           E SSH L Q R+ G +     FTNL +DH+DYH + + YF AK  LF +  LL   + ++
Sbjct: 184 EVSSHALAQQRVAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGARSV 243

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + +DD + + + +R   A  R  S+      +H+  +       +  +     +  F  P
Sbjct: 244 VNSDDPWGERLAERLGAACWRS-SLEDPSAELHMSDLQMTAAGVEGRLISPVGEGRFRSP 302

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVD 361
           L G F + N L A G+ +   +   ++LE + +   VPGR E V  N         + VD
Sbjct: 303 LLGRFNLMNLLQAIGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAANLPPVLVD 362

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + L+  L   R   +GR+I VFGCGGDRD+GKRP M +IA  LAD  +VT DNPR
Sbjct: 363 YAHTPDGLDNALSAARPFCAGRLICVFGCGGDRDRGKRPQMAEIAARLADRVVVTSDNPR 422

Query: 422 SEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           +EDP +I  +++ GIP     + +G+R +AI +AI      D+++VAGKGHE   I+   
Sbjct: 423 TEDPRQILDDVVAGIPPGSDLLVEGDRAQAIASAIAEAEPNDLVLVAGKGHEDYQILGT- 481

Query: 479 EKKMSVDCDIIREILGLIL 497
           EK    D +     L L L
Sbjct: 482 EKVHFDDREEAERALRLRL 500


>gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi JD1]
          Length = 508

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 131/509 (25%), Positives = 231/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+  +I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi 80a]
          Length = 508

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 131/509 (25%), Positives = 231/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+  +I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRRQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
 gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
          Length = 508

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 131/509 (25%), Positives = 230/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
 gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
          Length = 505

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/509 (25%), Positives = 231/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++ K   +LI     +       +I+ V+  S+ +   ++F A+ G + DGH FI 
Sbjct: 4   KLNDVLLKLDQDLIK----YVKGSLNLEISGVTYSSKLVLPRFVFFALPGIRFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  IV S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  MAIQKGSNVIVCSRDLDF------YSPNVTYIKVDDFSIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    +        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKRGIKVGFVSTVFFDDGSGSLIKNPYRQSTPESTEIHAF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +   GV +  +E++SHGLD    RL  +   A  FTN+G DH+++H T + Y N K+
Sbjct: 174 LSNMVKNGVQYAVLESTSHGLDFETARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF+ +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFQSVSDDAGFGVINLDDVYSSDFKNAIKKSF--TYSLKNSQADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR + + 
Sbjct: 292 EFYYKGIKYFANVNLLGSFNVENVMAALILVSKLLNIDIQDIVDELVCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +     R+I VFG  G+RD  KR + G+I+   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFAINRLISVFGSAGERDVAKRFLQGQISDIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +         +R +AI  AI +    D++V 
Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNRDLFFIPDRRQAIEKAISLARAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I+    +    + ++++  +
Sbjct: 471 LGKGHESS-IIYKNREMFWNEQEVVKNAI 498


>gi|87302991|ref|ZP_01085795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
 gi|87282487|gb|EAQ74446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
          Length = 508

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 147/508 (28%), Positives = 228/508 (44%), Gaps = 30/508 (5%)

Query: 11  FPELINQL-----SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            P+L++ L        P Q  +  +  +S DSR + AG +F+ + G++ DG  F P A+ 
Sbjct: 1   MPQLLHSLLQDCAVAIPAQLPDAVVTGLSCDSRRVAAGTLFIGLPGSQVDGGSFWPAALE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTG 122
                   +                P+LV+++   ++    A+  +      +  + VTG
Sbjct: 61  ---RGAAAALIGPAAAAQCPPGPADPVLVLEDPVAEWAGRLAASFWHDPSRRLALIGVTG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++    ++ +    G S+   G   +     +     TT     L   L+     G
Sbjct: 118 TNGKTTTTHLIEHLSAGCGKSTALFGTLINRWPGHSVTASHTTAFADVLQGQLARAVEAG 177

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
               ++E SSH LDQ R+ G       FTNL +DH+DYH + +AY  AK RLF   L  +
Sbjct: 178 AQLAAMEVSSHALDQRRVAGCHFAGAVFTNLTQDHLDYHPSMEAYLEAKARLFSSELL-D 236

Query: 242 SPAIIYADDAYSKEVMKRAHNA---GCRVLSVGYQGKFI--------HLKKVCAIHNKQQ 290
             A++  DD +   + +R            S+      +         L  +    +   
Sbjct: 237 GSAVVNIDDPWGARLAERLSGQLGERLWRSSLAVAAAEVGPEDLPELRLDDLVFAADGVS 296

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV- 349
            T+        F  PL G F + N L A G+    G+  A +LE +     VPGR E V 
Sbjct: 297 GTLITPLGCGAFRSPLVGRFNLMNLLQAVGVLQQQGLPLAQLLEAIPSFRGVPGRMERVM 356

Query: 350 -GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
               +    + VDYAHT + LE  L   R    G+++ VFGCGGDRD+GKRP M  IA  
Sbjct: 357 LPEAAELPAVLVDYAHTPDGLENALAACRPFARGQLVCVFGCGGDRDRGKRPQMAAIAAR 416

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           LAD  +VT DNPR+EDP++I  +++ GIP       + +R  AI  A+ M    D++++A
Sbjct: 417 LADRVVVTSDNPRTEDPQRILDDVVAGIPSGTDLTVEVDRAAAIAAAVAMAGPSDLVLIA 476

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHE   I+    K    D +   + L
Sbjct: 477 GKGHEDYQILGT-TKVHFDDREEAEKAL 503


>gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 529

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 141/481 (29%), Positives = 223/481 (46%), Gaps = 20/481 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  V+  S   +  W+FVAI G  + G  F   A   GA A++  +A + +  S  + 
Sbjct: 46  TRIAGVTVSSDDCEPQWLFVAIPGLSQHGIRFARAAKEAGAVAVLTDAAGASRAVSEGL- 104

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++VVD+ R  ++  A+ +YG    ++  LAVTGT+GK++ +  ++         + 
Sbjct: 105 -GLPVVVVDDPRSHVAALAAAVYGHPARDLVTLAVTGTNGKTTTSYLMRAALAAVHPRAA 163

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             G   T +   + +   TT     + + L+     G     +E S+H L  HR+DG+  
Sbjct: 164 LCGTVETRVGPVSFEAERTTAESPVVQRFLALARECGEGAAVIETSAHALSLHRVDGVVF 223

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +FTNL  DH+DY+   + YFNAK  LF         A++  DD + + +   A    
Sbjct: 224 DVAAFTNLQHDHLDYYGDMEGYFNAKALLFTP--EHAKRAVVCVDDEWGRRLAASAPIPV 281

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGL 321
             V ++        ++      +  +   ++   +G   +   P+ GE  V N  VA   
Sbjct: 282 TTVSALTDAPAHWRVRAAHPDPSIGRTVFTLVDPDGTGHEVRMPILGEVNVQNTAVALVS 341

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            +A G+     L  LE    +PGR E V         + VDYAHT  +LE  L++ R +T
Sbjct: 342 AVAAGVPLDGALRALEAAPQIPGRMEKVNPVPGNQPLVVVDYAHTPEALEWTLRSTRELT 401

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
           +GR+ +VFG  GDRD  KR  +  IA   AD+  VTD+NPR+EDP+ IR  ++ GI    
Sbjct: 402 AGRLHIVFGTDGDRDASKREHLAGIAAAGADVLWVTDENPRTEDPQSIRDYLLRGIASQR 461

Query: 439 ------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                       R +A+R AI      D +++ GKG E    V  G K    D  + RE+
Sbjct: 462 PSMADVTEVVTCRRDAVRRAILAAQPGDTVIITGKGAEWYQEVE-GIKHRYNDVPVAREV 520

Query: 493 L 493
           L
Sbjct: 521 L 521


>gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 476

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 139/500 (27%), Positives = 228/500 (45%), Gaps = 34/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++ ++ K+   +   +        +++I  VSS+S+ I+  +IFVAI G + DGH +I
Sbjct: 1   MKIEKIL-KEISYISKNIQ------NDKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  GA  IV ++           ++    + V++ R  L+  ++ L     +   ++
Sbjct: 54  ENALENGASTIVYTND------DVEFKNEINYIKVEDARLALAKISNFLSDFPSKSLRMI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A+ V  +  + G +   IG      +        TTP    +   L+  
Sbjct: 108 GVTGTNGKTTTANIVSFLLNKLGETCANIGTDGAFFNGKTLPTEHTTPEITDINYILNEA 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+ +V +E SSHGL   R  GI    G FTNL  +H+DYH+T   YF AKM L    
Sbjct: 168 KKDGIKNVVMETSSHGLCLKRNYGIAYEYGVFTNLSPEHMDYHKTMDNYFKAKMIL---- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      ++  DD Y K+  +   +A    ++     K  ++K+V        +   V G
Sbjct: 224 LNHSKKQVVNLDDDYGKKAKEIFKDALTISINEDSNYKAENIKRV-----DMGLEFFVNG 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F        +  +YN+L A  +   +G     + + LE    V  RFEF+  N  G  
Sbjct: 279 VKFHLKRFGMYD--IYNSLCAIAIANDLGFKLEEISKALEGFKGVKSRFEFI-ENDLGIN 335

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VD+AHT+ S E + K++          V+G  GDR    R  +G+I+      +++T 
Sbjct: 336 IVVDFAHTTTSFESLYKDLPKDRKKF--AVYGISGDRTPDIRRGLGRISAKYDIFSVITT 393

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P+ +  E I  +I  G+       I   NR EAI+ AI    K D + + GKG E   
Sbjct: 394 DDPKFDTFENISNQIKEGVEENNGECIIIRNRKEAIKYAISHAKKGDFVFMLGKGEEDFL 453

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            +    K    + + IRE+L
Sbjct: 454 KLKANIKTYYNEKETIREVL 473


>gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 491

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 147/502 (29%), Positives = 235/502 (46%), Gaps = 26/502 (5%)

Query: 1   MKLQDLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+     ++ NQ+  +      E  I  +S DSR IQ   +F  + G   DGH F
Sbjct: 1   MKLVDLL-----DVKNQIYHLIQGTIEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
              A  +GA  +V S    ++          P++ V++  K ++  A R Y       ++
Sbjct: 56  AKMAEEKGAVCLVASKHVDVK---------IPVVYVEDVIKTMAFLAMRFYHDPSGSMSL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ + +++  S   IG               TTP  + L K+L+ 
Sbjct: 107 IGVTGTNGKTTTTHIIRHLFEKNKKSCGMIGTNGIWYHQEHIYTPNTTPDSLTLQKSLAK 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV   + E SSH L   R+  +      FTNL  +H++ H T   Y  AK  LF +
Sbjct: 167 MKEEGVFICTSEVSSHALVMGRVQNVDFNVAVFTNLTHEHLETHHTMAEYGMAKSLLFAQ 226

Query: 237 LL--PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           L        AI+  DD Y+K +  R  NA     S        + K +  + +K + T+ 
Sbjct: 227 LGSGNNGKIAILNKDDTYAKVIASRC-NATIWYYSTKDPSAEFYAKDMVYLASKTEFTLV 285

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G ++  + PL GEF V NAL A     A+       +E L     V GR + +  N  
Sbjct: 286 FQGLEYPVISPLIGEFNVQNALAALAAYYALERHLEKGIEALSSFSGVEGRMQTI-ENDL 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLADIA 413
           G    VD+AHT + LE  +  ++ +   RII + G  GG+RD   R  +G+IAL+ +D  
Sbjct: 345 GIHAIVDFAHTPDGLEKAMAALKKLNHKRIITMIGHDGGNRDNSIRQDLGRIALEYSDYV 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + T +NPR EDP KI  E+++G  +  +    +R +AI   + +  K D+L   GKGHE 
Sbjct: 405 VFTSENPREEDPMKIMKEMVNGLEVHHYEFVKDRHKAIDRVVALGQKGDILFFTGKGHEP 464

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             ++   EK    +   ++E L
Sbjct: 465 YQLIGC-EKIPFHEAQFVKEAL 485


>gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
 gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
          Length = 505

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 142/473 (30%), Positives = 225/473 (47%), Gaps = 18/473 (3%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +  DSR +    +FVAI  +      +I  A+AQGA A++V +  +       +  + 
Sbjct: 36  RRLVQDSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAA-----EGVELDK 90

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            +  + N  + +   A    G    ++  + +TGT+GK+S A  + Q  Q+ G++S  IG
Sbjct: 91  QVFAIANLHEVIGRMADAFVGHPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIG 150

Query: 149 PTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                       +  +TTP    + + L      GV +V++E SSH L+Q R+DG+    
Sbjct: 151 TLGAGITGERRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQRRVDGVAFNI 210

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTN  RDH+DYH T + Y   K ++F   LP  + A++  DDA ++         G R
Sbjct: 211 VAFTNFTRDHLDYHGTMEEYAAQKAKIFT--LPGVTTALLNLDDAAAENHFHNTLPEGMR 268

Query: 267 VL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +   S G+    +    V       +  + +EG+    +  L G F V N L  A +  
Sbjct: 269 GIGMTSRGHSEASVRADHVQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTCATVLW 328

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A GI+   + E L  L  V GR   +  N +   + VD  HT +++   +  +R     R
Sbjct: 329 AQGIEPQAIAEALAPLEPVLGRMTRIRENDKLPLVVVDAGHTPDAVRQAVTALRESGHTR 388

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           I+ VFG  GDRD GKRP M +I  + +D+ +VTDD+  +ED ++I A I  G       I
Sbjct: 389 IVTVFGATGDRDPGKRPEMARIVEEGSDLIVVTDDDVHNEDGDQIVAHIRAGFEHPERVI 448

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           E  +R  AI  AI+  N  DV+++ GKGHE   I+ N E+    D D    +L
Sbjct: 449 EIRDRASAIAYAIDAANPDDVVLLQGKGHEPYQIIGN-ERVPFSDLDTAIRLL 500


>gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces coelicolor A3(2)]
 gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces coelicolor A3(2)]
          Length = 506

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 138/494 (27%), Positives = 217/494 (43%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL +        +I  ++ DSR ++ G ++ A+ G +  G  F+ QA       
Sbjct: 17  LAELADQLGVAAPDGS-AEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAA----GL 71

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
              +             +  P LVVD+ R  +   A+ +YG    ++L   +TGTSGK++
Sbjct: 72  GAAAVLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   + +  +         I      +  TTP    L    + +  +G   V++E
Sbjct: 132 TAYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+D        FTNL  +H+++H   + YF AK +LF     +    ++  
Sbjct: 192 VSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTP--KRSRLGVVNV 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD Y + + K A        + G+        +V         T +  +G+      PL 
Sbjct: 250 DDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLA 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D     + +  +  VPGR E V    +     VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERVD-EGQPFFAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T G++  V GCGGDRD  KR  MG      AD A++T DNPRSEDP  
Sbjct: 369 AVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                +R  AI  A+      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRQVLREAI 501


>gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
 gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
          Length = 489

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 135/484 (27%), Positives = 226/484 (46%), Gaps = 18/484 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +L+ F     + +I  +  DSR  +   IF  + G   DGH  I +AIA GA  IV S  
Sbjct: 2   KLTDFFENVPDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHIDEAIANGAIVIVHSEP 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQ 134
                    I  +   + V +     +  A   Y     ++     TGT+GKSSVA  ++
Sbjct: 62  IE------KINPDITYIKVKDVVHVFNQVADSFYDYPSHHMTMYGVTGTNGKSSVAWIIR 115

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  +   +++    +   ++      + +P+   +   L  +   G+ + + EASS  +
Sbjct: 116 NILNQIEPTAYVGTISIEYNNVKLPPLVASPNIDEVHGILRDMVDAGIKNCAYEASSIAI 175

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLD I      FTNL  DH+DYH T   YFNAK +LF++L  +E+ AI+  DD    
Sbjct: 176 DQGRLDAIDFDVAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQL-KEEAIAIVNVDDPSG- 233

Query: 255 EVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             MK   +   +V + G        +     + +  + T+ +   D+     L   F +Y
Sbjct: 234 --MKIVQDTQAKVFTYGIDYEADYRVTDYHLLKDSTRFTLHINDHDYRLETNLIARFNIY 291

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N + A       G+    +  +++ L+ V GR E +  + +   + VD+AHT++ +E + 
Sbjct: 292 NLVAAIAAIHQKGVSMDDIASYIQHLNQVEGRMERIQ-DGQPFNLIVDFAHTADGIEKVC 350

Query: 374 KNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +   +IT    RII + G  G RD  KRPI G+I     D+ I+T+D+ R E   +I  +
Sbjct: 351 QYASSITPKDCRIIAITGSAGKRDTAKRPIFGEILDHYCDMIILTEDDSRGESVREIAED 410

Query: 432 IIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I  GI    ++   +R +AIR ++E+ ++ D ++V GKG+E       G +    D  I 
Sbjct: 411 IAKGIHHKNYVIIEDRYDAIRQSVELCSEGDTILVLGKGNEKFIAREFGRESYEGDDVIC 470

Query: 490 REIL 493
            E+L
Sbjct: 471 HEVL 474


>gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 483

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 133/501 (26%), Positives = 236/501 (47%), Gaps = 29/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK   +I   F ++I+ +S    +   +  I  +++DSR       FVAI G+  DGH +
Sbjct: 1   MK-GKIILISFEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTY 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I  AI +GA  I+ +   + ++           + V++ RK L+  ++ +Y    +   +
Sbjct: 60  IASAIKKGASLIIHTEDVTCEE-------GISYIRVNDPRKALAQISNLIYDFPSKKMEL 112

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           +AVTG++GK++ +  +  +       S  IG   + +         TTP    + + L+ 
Sbjct: 113 VAVTGSNGKTTTSRLIAFLMGEIFGDSASIGTNNAHVGDDIIPTSNTTPDITEVNRILAK 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              + + H+++EASSHGLDQ RL G+ +  G FTNL  +H+DYH+T   YF AKM LFE 
Sbjct: 173 CLEKNIHHLALEASSHGLDQKRLYGLDIAYGIFTNLSEEHLDYHKTMDNYFKAKMILFEN 232

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   +   DD Y     KRA     + ++     +    +    +    +++  + 
Sbjct: 233 ----AKNTLANIDDPYG----KRAKELFPKTITFAIDEESADYRAEDIVKKDGKISFKIR 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G +F  +      +++YN L A      +G     + E  +K   +  RFE++  N  G 
Sbjct: 285 GVEF--VLNKIANYEIYNTLAAVACLNQMGASMEDIGEAFKKFKGIKSRFEYI-ENDLGI 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +D+AHT  + E + +++       II VFG  GDR+   R ++G         +++T
Sbjct: 342 NIILDFAHTPRAYEALFESVP--KGSNIIAVFGINGDRNSEFRRLIGNACGKYKVFSVLT 399

Query: 417 DDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            D+P+ ++ + I  EII G+      ++ +  R +A+R AI+M    D + + GKG E  
Sbjct: 400 TDDPKFDNVDHINEEIIVGLDEYKADYVIRKERKDAMRYAIKMAKPGDYVFLLGKGEENF 459

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
                 EK    + + +RE+L
Sbjct: 460 IKFHGNEKTPYSERETLREVL 480


>gi|311741524|ref|ZP_07715348.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303694|gb|EFQ79773.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 511

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 164/483 (33%), Positives = 241/483 (49%), Gaps = 26/483 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +++    DS  +  G +F A+ G +  G  F        A A++  +A    D     +
Sbjct: 22  VEVSACGLDSSRLPEGALFAALPGTRVHGAQFARDTK---AGAVLTDAAG--LDLLTEAQ 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA---SFVQQICQRSGLSS 144
              PILVV++ R  L   ++ +YG HP   L V G +G S        ++     +G S 
Sbjct: 77  ETRPILVVEDIRAVLGPISAEIYG-HPTRELTVIGVTGTSGKTTTSYLLEAGLLHAGHSV 135

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG T T I+       LTTP    L +  + + ++GVTHV +E SSH L+  R+ G +
Sbjct: 136 GLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVMEVSSHALELGRVRGTR 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL +DH+D+H T + YF AK +LF      E  A++  DD + + +   A +A
Sbjct: 196 FAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAER-AVLCIDDEWGERMRGVAKSA 254

Query: 264 GCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           G  V +V  QG    +   +        Q+V +  +G +F F  PLPGEF + NA +A G
Sbjct: 255 GHEVTTVDTQGAAATISARQTATEATGAQEVALDYDGANFTFRLPLPGEFNIANACLALG 314

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--- 377
           +  A+G D A  L  +EK+  VPGR E +    +     VDYAH   ++  +L  +R   
Sbjct: 315 MATAVGEDPAEFLSGVEKV-AVPGRMERID-RGQDFVAVVDYAHKPAAIAAVLDTLRGQL 372

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             T+GR+ +V G GGDRD  KRPIMG  A   AD+ +VTDDNPRSEDP  IRA ++ G  
Sbjct: 373 EGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPRSEDPATIRAAVVEGAR 432

Query: 438 GFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                    E G+R  AI   ++     D ++V GKGHE   +V NG+     D + +  
Sbjct: 433 DAAPQGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV-NGKTLHFDDREEMAR 491

Query: 492 ILG 494
            +G
Sbjct: 492 AIG 494


>gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 488

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 138/500 (27%), Positives = 217/500 (43%), Gaps = 32/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+  +                +  I+ +  DSR      +F  + G   DGH F 
Sbjct: 1   MKLNKLVNTEL---------------DCDIDHLVLDSRDRVKNGMFFCLKGLTVDGHQFA 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  GA A+V S           +      + VD+    L       Y     N+   
Sbjct: 46  KQAVENGAVAVVHSDDID-------VIEGIVYIRVDDVMTELHRVTDVFYNSPSTNMYVY 98

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
             TGT+GKS+    V+ I +R G+++  IG  S   +  +     TTP  + L   L  +
Sbjct: 99  GITGTNGKSTTMLTVRNILRRFGVNAGYIGTISVEYNEHKFAPSLTTPDIVELQSYLQDM 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV  V +E SS GL   R++ I     SFTNL  DH+DYH+T + YF AK  LF+ L
Sbjct: 159 RLEGVEEVCLEVSSQGLALRRVESIDFDNASFTNLTHDHLDYHKTMENYFEAKKMLFDNL 218

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P     ++  D+ Y  E+++    +      V         K +    +  + T+  EG
Sbjct: 219 KP-SGFMVLNIDNEYG-EILQNQDYSNVVTYGVDNPKAHYRAKDIVLHEDFTEFTLIHEG 276

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K +  +      F VYN L    +    G     ++  L+ +  V GR   V    +  R
Sbjct: 277 KTYPVVTNFVAIFNVYNMLNVIAILHQRGYALEKIIPELKDIEHVDGRQTMVN-KGQPFR 335

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VD+ H  +S++ + + +R+      R+I VFG  G RD  KRPIMG++A    D  I+
Sbjct: 336 VIVDFGHAPDSMKNVYEFVRSTQDEGARLITVFGAAGGRDTAKRPIMGRVASMYCDHVII 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T+ + R E    I  +II GI    +    NR +AI  A++M    D +V+ GKG E   
Sbjct: 396 TEHDNRDERVVDITQDIITGIESNNYEFVPNRTDAIEKALKMALPGDTVVLIGKGEEKFI 455

Query: 474 IVTNGEKKMSVDCDIIREIL 493
               G K+  +  ++   ++
Sbjct: 456 YREQGSKETWMGDEVCASLI 475


>gi|326771701|ref|ZP_08230986.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
 gi|326637834|gb|EGE38735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
          Length = 528

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 149/485 (30%), Positives = 231/485 (47%), Gaps = 25/485 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  I  VS DS     G +FV + G    G  F   A+A GA A++  +  +       
Sbjct: 43  NDLSILGVSVDSADTVPGELFVGLPGFTVHGARFAADAVASGAVAVLTDADGAQIVHQTA 102

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRS-GL 142
               TP+LV  + R  +   ++ +Y      ++  AVTGT+GK++ A F+  I     G 
Sbjct: 103 --PGTPVLVHSDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGG 160

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                     +   + ++  TT     L + ++      V   S+EASSH +  HRLDGI
Sbjct: 161 CMVAGTVELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGI 220

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +    FTNL RDH+D+H+T + Y  AK +LF     +     +  DD +   +   A  
Sbjct: 221 VVDVAGFTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARRGV--VCVDDQWGAALAAEAPI 278

Query: 263 AGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVA 318
              RV +  G       +            T ++   +G+  +   PLPG   V NA +A
Sbjct: 279 EIDRVRAYPGETPADWWVSDAAVSLTDSATTFTLHGPDGEKIEASCPLPGLVNVQNAALA 338

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIR 377
             + I  G+ +A     L   H +PGR + +     R G   VD+AHT +++E+ LK +R
Sbjct: 339 LVMAIRAGVPAATAAMALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPDAMELALKAVR 398

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            IT GR+IVVFG  GDRDQGKRP++G++   LAD+ +VTD+NPRSEDP+ IR  I+ G+ 
Sbjct: 399 PITPGRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEGVR 458

Query: 438 GFIEKGN----------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           G   + +          R +A+R  +E+    D ++V GKGHE    +     +   D  
Sbjct: 459 GV--RPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMAGEFIRY-NDAP 515

Query: 488 IIREI 492
           ++ E 
Sbjct: 516 VMAEA 520


>gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
 gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
          Length = 501

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 146/483 (30%), Positives = 225/483 (46%), Gaps = 26/483 (5%)

Query: 22  PMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            + W   ++   + +DSR +  G  F+A  G   DG   +  A+A+GA A +V      +
Sbjct: 13  AVAWLRARVTGTLQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMARGAVACLVEQ----E 68

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
           D      +   I  +   +    L A++ +G+  E +  LAVTGT+GK+S A ++     
Sbjct: 69  DVEPFGLAGEHIAALPGLKAATGLIAAQWFGRPSERLQVLAVTGTNGKTSTAWWLADALN 128

Query: 139 RSGLS-------SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                          +G     +        +TTP P+ L +A +  + +G+   ++EAS
Sbjct: 129 GLSKKELPALAGCALVGTLGIGVPPGLSSTGMTTPDPVRLQRAFAQFAQEGLGACAIEAS 188

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S GL + RL G ++    FTNL +DH+DYH    AY+ AK  LF+   P    A++  DD
Sbjct: 189 SIGLAEQRLAGTQISVALFTNLTQDHLDYHSDMAAYWQAKRVLFD--WPGLRAAVVNIDD 246

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           A+   +       G  + SV  QG      + +         T++   +       L G 
Sbjct: 247 AHGARLHAELQGGGLDLWSVSIQGPARLQARDIVHRGAGLAFTVAESAQALPLQTRLIGL 306

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + V N L       A+G+  A  L+   +L  VPGR E +    +   + VDYAHT ++L
Sbjct: 307 YNVSNLLGVIAGMRALGVPLAQALDACARLAPVPGRMEQLAFAGQ-PLVAVDYAHTPDAL 365

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L  +R +     GR+  VFGCGG+RD GKRP+MG +A   AD  IVT DNPR EDP 
Sbjct: 366 HQALAALRPMAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADRVIVTSDNPRGEDPR 425

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ G         + +R  AI  A+      DV+++AGKGHE     T G+++  
Sbjct: 426 AIIHQILLGTIAGTSVRAEEDRAAAICLAVAEAEAADVVLIAGKGHEDYQE-TAGQRQPF 484

Query: 484 VDC 486
            D 
Sbjct: 485 SDM 487


>gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
 gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
          Length = 508

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 133/512 (25%), Positives = 232/512 (45%), Gaps = 32/512 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I  V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  IV S             S+   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQRGSNVIVCSRDLDF------YSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           L  +    V +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LCNMVKNEVQYAILESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRAVSDDAGFGVINLDDFYSSDFKNAVKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR + + 
Sbjct: 292 EFYHKGVKYFANVNLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIRE-ILGL 495
            GKGHE+  I+    +    + ++++  IL L
Sbjct: 471 LGKGHESS-IIYKNREVFWNEQEVVKNTILSL 501


>gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
 gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
          Length = 508

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 131/509 (25%), Positives = 231/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   +  D   +++ L+ +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
 gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
          Length = 508

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 129/509 (25%), Positives = 231/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAIKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   +  D   +++ L+ +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I+    +    + ++++  +
Sbjct: 471 LGKGHESS-IIYKNREIFWNEQEVVKNAI 498


>gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Acidovorax ebreus TPSY]
 gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY]
          Length = 501

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 141/481 (29%), Positives = 218/481 (45%), Gaps = 25/481 (5%)

Query: 22  PMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            + W  +++   + +DSR IQ G  F+A  G   DG   +  A+A+GA A +V      +
Sbjct: 13  AVDWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVE----CE 68

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
                  +   I  +   +    + AS  +G   + +  LAVTGT+GK+S A ++     
Sbjct: 69  GVEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTNGKTSTAWWLADALN 128

Query: 139 RSGLS-------SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +              +G     +    Q   +TTP P+ L +A +  +  G    ++EAS
Sbjct: 129 QLSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQFAEAGHRACAIEAS 188

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S GL +HRLDG ++    FTN  +DH+DYH    AY+ AK  LF+   P    +++  DD
Sbjct: 189 SIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFD--WPGLRASVVNVDD 246

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                +      +   + SV  QG      K +         T++           + G 
Sbjct: 247 PQGAALHAELQGSDLDLWSVSLQGPARLQAKHIVHTGAGLAFTVAEGAHTEVLQTQVIGL 306

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + V N L       A+G+  A  L+   +L  VPGR E +    +   + VDYAHT ++L
Sbjct: 307 YNVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQ-PLVAVDYAHTPDAL 365

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L  ++ +     GR+  VFGCGG+RD GKRP+MG +A   AD  IVT DNPR E+P+
Sbjct: 366 HQALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRGEEPQ 425

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ G         + +R  AI  A+      DV+++AGKGHE            S
Sbjct: 426 SIIHQILLGTIAGTSVRAEVDRAAAIAQALADAGANDVVLIAGKGHEDYQETAGQRVPFS 485

Query: 484 V 484
            
Sbjct: 486 D 486


>gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. m3-13]
          Length = 418

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 137/435 (31%), Positives = 209/435 (48%), Gaps = 31/435 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKLQ        +LI  L  + +  +   +I+ +  DSR +  G +F  I G   DGH F
Sbjct: 1   MKLQ--------QLIQYLHRYEVSSKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
             +A+ +GA AI+      +           P++VV +T + +++ A   + +    +  
Sbjct: 53  AQEAVNKGAVAIISEKPLDVA---------VPVIVVPDTMRAMAILADVFFQQPTHKLHL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ I Q     +  IG     I +     + TTP  + L  +   
Sbjct: 104 IGVTGTNGKTTTTHIIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQ 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +    V  V +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF  
Sbjct: 164 MVENKVDTVVMEVSSHALHMGRVYGCDFDVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSS 223

Query: 237 L-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L     L K   A++ ADD  S ++ KRA  A  +V++ G  +   I  K V        
Sbjct: 224 LGNSYNLAKPKYAVLNADDPAS-DIYKRATAA--QVITYGINETSDIRAKNVKTSAKGTT 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +  + K       L G+F VYN L A        I    ++  +E +  VPGRFE + 
Sbjct: 281 FDLVYDNKVVPINLKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGVPGRFEAI- 339

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT +SLE +LK  + ++   I  + GCGGDRD+ KRP+M  +A++ A
Sbjct: 340 EAGQDFTVIVDYAHTPDSLENVLKTTKQLSQNNIYCIVGCGGDRDRSKRPLMAAVAVNYA 399

Query: 411 DIAIVTDDNPRSEDP 425
             AI T DNPRSE+P
Sbjct: 400 SKAIFTSDNPRSENP 414


>gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
          Length = 526

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 136/495 (27%), Positives = 226/495 (45%), Gaps = 25/495 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + Q++  P+  R      ++  S   ++ W+FVAI G K+ G  F   AI  GA  ++  
Sbjct: 35  LAQIAESPLSLR-----GITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTD 89

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
                Q F   +    P++ V + R  +    + +Y      +  +AVTGT+GK++ +  
Sbjct: 90  EDGRAQAFERGL--GVPVIQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYL 147

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           ++        ++   G   T +   + +   TT     +A+ L+           +E S+
Sbjct: 148 MRAAIASRFPNASLCGTVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSA 207

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L  HR+DGI     +FTNL  DH+DY+   + YF AK  LF     +     +  DD 
Sbjct: 208 HALSLHRVDGIVFDVAAFTNLQHDHLDYYGDMENYFQAKALLFTPEHSRHGV--VCVDDE 265

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPG 308
           + + + ++A      V ++  +     ++ V       +   ++    G       P+ G
Sbjct: 266 WGRRLAQQATVPVTTVSALTEEAADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILG 325

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSN 367
           E  + N  VA    +++GID A V+  +E    +PGR E V  T      + VDYAHT  
Sbjct: 326 EVNIQNTAVAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPE 385

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L++ R +TSGR+++VFG  GDRD  KR  + +IA   AD+  VTD+NPR+E P++
Sbjct: 386 ALEWTLRSTRELTSGRVVIVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQE 445

Query: 428 IRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           IR  ++ GI                R +A+R AI      D +++ GKG E    +  G 
Sbjct: 446 IRNYLLRGIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAEWYQEI-QGI 504

Query: 480 KKMSVDCDIIREILG 494
                D  +  E+L 
Sbjct: 505 HHRYNDVPVAAEVLA 519


>gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
          Length = 508

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 129/509 (25%), Positives = 231/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAIKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   +  D   +++ L+ +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I+    +    + ++++  +
Sbjct: 471 LGKGHESS-IIYKNREIFWNEQEVVKNAI 498


>gi|297626715|ref|YP_003688478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922480|emb|CBL57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 529

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 149/486 (30%), Positives = 237/486 (48%), Gaps = 26/486 (5%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P      +I +V  DSR +  G ++V + G +  G        AQ A    V+     +
Sbjct: 35  LPAGADHLQIVDVYLDSRSVLPGSLYVGLPGTRTHG----ANFAAQAAALGAVALLTDAE 90

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQ 138
                  +  PI+V +  R  ++  A+R++G    ++L   +TGT+GK++ A  ++    
Sbjct: 91  GAELAADAGLPIVVAEQPRVAMAHMAARVFGDPTRDLLMIGITGTNGKTTCAFLIEGALI 150

Query: 139 RSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +G     IG               + +TTP    L    + +   G   + +E SSH L
Sbjct: 151 AAGHRVGTIGTIGFRLEGEPLPSSRSTITTPESCDLQALFAVMREGGADAIVMEVSSHAL 210

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              R++G+     +FTNLGRDH+D+H+TQ+AYF AK +LF   +   S A+I  DD + +
Sbjct: 211 ALDRVEGVHFDVAAFTNLGRDHLDFHKTQEAYFEAKAKLFRPTM--TSRAVINGDDPWGR 268

Query: 255 EVMKRAHNAGC-RVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            +++RA  AG   V++ G+     +  L     I   + + ++  G+   F   LPG++ 
Sbjct: 269 ILVERADAAGAPHVVTTGFDPERDYRVLDSTPTIEGGEHIELATPGEAMAFDIALPGQYN 328

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA     +    G++    +  LEK  +VPGR + V       R+YVD+AHT  ++E 
Sbjct: 329 VANAATTIAVLAQAGVNLDRAVPGLEK-ALVPGRMQRVDLGPDSPRVYVDFAHTPQAVES 387

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L  +     GR +VV G GGDRD+ KR  MG  A   AD+ +VTDDNPR+EDP  IRAE
Sbjct: 388 ALSAL----PGRTLVVLGAGGDRDEAKRGPMGVAAARHADVVVVTDDNPRTEDPATIRAE 443

Query: 432 IIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++ G         I+  +R  AI  A+ M +  D + + GKGHET   + NG      D 
Sbjct: 444 VLAGARQVPDTEVIDGLDRRHAIGLALGMAHAGDAVAILGKGHETTQEI-NGVLHPFNDV 502

Query: 487 DIIREI 492
            ++++ 
Sbjct: 503 TVVQQA 508


>gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
 gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
          Length = 482

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 142/499 (28%), Positives = 229/499 (45%), Gaps = 39/499 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKE--DGHLFIPQAI 64
            P L    ++F  +  E  +  ++ DSR ++ G++FVA+ G    +++  DGH F+P+A+
Sbjct: 1   MPTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTG 122
           A+GA A+V     +L           P L V + R+ L+L A R +G+    +L   VTG
Sbjct: 61  ARGAVAVVGERPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           + GKS+ AS +  + +R+   S     +G      +       TTP    +   L   + 
Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAAD 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-HIDYHQTQQAYFNAKMRLFEELL 238
           +G+    +E SSH L   R++G+    G F N   D H+D+H T +AYF AK  L E   
Sbjct: 172 RGLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVER-- 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A++     +   + +R H      LS G +G  ++ + +          +     
Sbjct: 230 --SDLAVLARSLPHFPRLAQRPH------LSFG-EGGEVYAEGLRETPEGLAFRLHTPWG 280

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +   PL G + + NAL A+   +A+G+    VLE L     VPGR E V       R+
Sbjct: 281 SGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVVLKA--PFRV 338

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +D+AHT  SLE  LK +R  T GR+++V G  G+RD  +R  +G++A  LAD    T++
Sbjct: 339 VIDFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFFTEE 398

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           + R ED   I   +          +    +R EAI  AI      D +++AGKGHE    
Sbjct: 399 DHRGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVLLAGKGHEATLE 458

Query: 475 VTNGEKKMSVDCDIIREIL 493
                     + +   + L
Sbjct: 459 RGQVALPW-NEREAALKAL 476


>gi|317508858|ref|ZP_07966497.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
 gi|316252819|gb|EFV12250.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
          Length = 522

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 154/487 (31%), Positives = 237/487 (48%), Gaps = 30/487 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ V+  ++  Q G +FVA+ G K  G  + P A A+GA A++  +A +          
Sbjct: 36  RVSGVTQSAQTAQPGDLFVALPGAKTHGAKYAPLAKARGAVAVLTDAAGAALLEDV---G 92

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +L     R  L   ++ +YG     +  + VTGT+GK++    ++ + Q +G  +  
Sbjct: 93  EIAVLTAATPRSSLGALSALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFQAAGRMTGV 152

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T I S +  +  TTP        L+ ++  GV  V +E SSH LD  R+DG +  
Sbjct: 153 IGTVETRIGSTSLASSFTTPEAPATQALLAVMAEAGVGAVLMEVSSHALDFGRVDGTRFA 212

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEV-------M 257
           A  FTNL +DH+D+H   ++YF AK +LFE   P     A++  DDA+ + +        
Sbjct: 213 AAGFTNLSQDHLDHHGDMESYFQAKAKLFEPGSPVAAGRAVVCVDDAWGERMSQVAREGA 272

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEF----QV 312
            R   A   V + G +  +  L +    H  Q+V +    G+   F   L G       +
Sbjct: 273 GRGAQAPVTVATSGARADWTVLDRQEDDHGAQEVVVRDPRGQKLRFRLNLLGRHNAANAL 332

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
               +A    + +G +       +     VPGR E V    +     VDYAH   +L  +
Sbjct: 333 LALGLAEAAGLEVGPELLRGWASIS----VPGRLERVDA-GQDFLAVVDYAHKPEALVKV 387

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +R  T GRI VV G GGDRDQGKRPIMG+     A++ +VTDDNPR+EDP  IRA++
Sbjct: 388 LHALREHTEGRIAVVVGAGGDRDQGKRPIMGEACALGAELVVVTDDNPRTEDPAVIRAQV 447

Query: 433 IHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           + G          E G+R EAI  A+      D ++VAGKGHET   + NG K+   D +
Sbjct: 448 LAGAQESGRAEVWEVGDRAEAIARAVGWARAGDTVLVAGKGHETYQEI-NGVKQPFDDRE 506

Query: 488 IIREILG 494
           ++ + + 
Sbjct: 507 VLVQAIA 513


>gi|317052206|ref|YP_004113322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
 gi|316947290|gb|ADU66766.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
          Length = 464

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 231/473 (48%), Gaps = 32/473 (6%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA-IVVSSAYSLQ 80
           P    + + + +S D+R I    +F+AI G++ D HL +P+ ++ G  A  +        
Sbjct: 13  PHPQVDVEFSRLSRDTRDISPDCLFIAIAGSQFDPHLHLPELLSSGKIAGALCQHPVDGP 72

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138
           +           LV+ +  +  +  A   YG       ++ VTGT+GKSS  S+++Q+ Q
Sbjct: 73  NT----------LVLPDLAEREATIAVAAYGNPSAALKVVGVTGTNGKSSTISYLRQVYQ 122

Query: 139 RSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             G  +  IG          + +   TTP    L   L       V +V +E SSH +  
Sbjct: 123 ALGHRTATIGTLGYAIDGGPSAELANTTPCATTLQHILHLCLQHHVEYVFMEVSSHAIAL 182

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+ GI+     FTNL  DH+D+H T   Y   K+RLF        PA  YA   +++ +
Sbjct: 183 GRVQGIRFHGAIFTNLTPDHLDFHGTMDDYLQTKLRLFT-------PAPPYAI-IHTRRI 234

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            ++       VLS G  G+   +       + + +   ++G+ +    PL G   + N  
Sbjct: 235 PRKLPPLPG-VLSFG-PGEDADIPTTEQQVSPEGIRFCLQGQIY--RSPLRGRGNLENVQ 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             A  C   G +   V   +  L  + GRF  +  N R G   +DYAHT ++LE +LK+ 
Sbjct: 291 AVAAFCHHEGQERQQVARAIAALRPIEGRFMPISHNGRHG--IIDYAHTPDALEQLLKST 348

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R I  GR+IVVFGCGGDRD+ KRP+MG IA +LADI IVTDDNPR+EDP+ I ++II  +
Sbjct: 349 REICHGRLIVVFGCGGDRDKTKRPLMGAIASELADICIVTDDNPRTEDPQHIISQIIAAM 408

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                     R+ AI  A E+ N  D++V+AGKGHE   I    +K    D +
Sbjct: 409 DMGRTTVIHERLRAITCARELANGDDLVVIAGKGHEKYQIYGR-QKHRFCDAE 460


>gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces lividans TK24]
 gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
 gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
          Length = 497

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 138/494 (27%), Positives = 216/494 (43%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL +        +I  ++ DSR ++ G ++ A+ G +  G  F+ QA       
Sbjct: 8   LAELADQLGVAAPDGS-AEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAA----GL 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
              +             +  P LVVD+ R  +   A+ +YG    ++L   +TGTSGK++
Sbjct: 63  GAAAVLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 122

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   + +  +         I      +  TTP    L    + +  +G   V++E
Sbjct: 123 TAYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAME 182

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+D        FTNL  +H+++H   + YF AK +LF     +     +  
Sbjct: 183 VSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKRSRLGV--VNV 240

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD Y + + K A        + G+        +V         T +  +G+      PL 
Sbjct: 241 DDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLA 300

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D     + +  +  VPGR E V    +     VDYAH ++
Sbjct: 301 GPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERVD-EGQPFFAVVDYAHKTD 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T G++  V GCGGDRD  KR  MG      AD A++T DNPRSEDP  
Sbjct: 360 AVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRSEDPLA 419

Query: 428 IRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                +R  AI  A+      D ++VAGKGHE    +  G 
Sbjct: 420 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIA-GV 478

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 479 VRPFDDRQVLREAI 492


>gi|87125588|ref|ZP_01081433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
 gi|86166888|gb|EAQ68150.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
          Length = 503

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 147/499 (29%), Positives = 240/499 (48%), Gaps = 18/499 (3%)

Query: 9   KDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +    L+  + + +P Q     I  ++ DSR +  G +F+ + G + DG  F P+A+A  
Sbjct: 3   QTLHSLLRAVGLPWPDQLANVPIESITCDSRCVSRGSLFLGLPGVRVDGGSFWPRALA-- 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPEN--ILAVTGTS 124
            +    +                P+LVV     +++   A+  + +      ++ VTGT+
Sbjct: 61  -DGAAAAVIGPAAAAVQPPGPEDPVLVVPEPVAQWIGELAAAFWQRPSSRMTLIGVTGTN 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    ++ +  ++G  +   G         +     TT     L   L+   + G  
Sbjct: 120 GKTTTTHLIEHLAAQAGRPAALFGTLVNRWPGHSITATHTTAFADRLQAQLAEAVAGGTQ 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKES 242
             ++E SSH L+Q R+ G +     FTNL +DH+DYH + QAYF AK  LF E LL  + 
Sbjct: 180 VAAMEVSSHALEQQRVAGCRFAGAVFTNLSQDHLDYHPSMQAYFEAKALLFAEPLLASDG 239

Query: 243 P-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DD + +++ +R  +   R      Q   + +  +    +  +  +     +  
Sbjct: 240 VRAVVTMDDPWGRQLAERLGDRCWRCSLEPDQEAELTMTDLVMRSSGVEGRLITPKGEGR 299

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGR 357
           F  PL G F + N + A  +    G+   L+L+ L     VPGR E V   S    +   
Sbjct: 300 FASPLVGRFNLMNLMQAVAVLQQQGLPLPLLLKGLGSFRGVPGRMERVVVASAAAAQLPA 359

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + L+  L+  R    GR+I VFGCGGDRD+GKRP M  IA  LAD  +VT 
Sbjct: 360 VLVDYAHTPDGLKNALEACRPFVEGRLICVFGCGGDRDRGKRPQMASIAAKLADRVVVTS 419

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP++I A+++ G+P     + +G+R  AI  A+      D++++AGKGHE   I
Sbjct: 420 DNPRTEDPQQILADVVEGLPSSTDCVVEGDRAAAIAAAVAEAKPGDLVLIAGKGHEDYQI 479

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +   EK    D +   + L
Sbjct: 480 LGT-EKVHFDDREEAGKAL 497


>gi|258546147|ref|ZP_05706381.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518572|gb|EEV87431.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 483

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 150/510 (29%), Positives = 224/510 (43%), Gaps = 53/510 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL DL+                   +R I  +++DSR +    +++A  G       F  
Sbjct: 6   KLNDLLKG-----------LTAATADRDIAAIATDSRALTPQTLWLAARGISHHALDF-- 52

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-------LVVDNTRKFLSLFASRLYGKHP 114
                          Y+ +   A I    P        +  +     L   A+R Y  HP
Sbjct: 53  ---------------YNPELHPAAIAYEPPYANPPADAIACEQLGAHLGEIAARFY-DHP 96

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L + G +G    +S V  + Q +G +         + +       TTP P+ + + L
Sbjct: 97  ARALKLIGVTGTDGKSSLVHFLAQATGGAMLGTIGYGKLDALE-PASHTTPDPLRVQQYL 155

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +     G+  V++E SSH L Q R+  ++   G FTNL RDH+DYH+  + YF AK  LF
Sbjct: 156 ARFRDAGIETVAMEVSSHALAQGRVAAVEYHIGVFTNLSRDHLDYHRDMEDYFLAKASLF 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFI-------HLKKVCAIH 286
              LP    A+I  DDA+ + ++     +   RV++V  Q             + +    
Sbjct: 216 ARPLP---VAVINIDDAHGRRLLDENRVHPKTRVIAVSSQNHAHPRAALTLRARDIVLSP 272

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +    T+  E +       L   F V N L  A   +A+G   A +   L  LH VPGR 
Sbjct: 273 DGIAYTLETEAEQVAIQSGLLARFNVDNLLNTAACLLALGTPFAAIPAKLAALHGVPGRA 332

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G    G    +DYAHT  +L  IL+ +R    G++  VFGCGGDRD+GKRP+M + A
Sbjct: 333 ERIGL-GNGAAAIIDYAHTPAALANILQGVRAHVPGKLWCVFGCGGDRDRGKRPLMAQAA 391

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              AD  ++TDDNPR+E+P  I A+ + G+        K  R EAIR  +  L   D +V
Sbjct: 392 EQYADAVVITDDNPRTENPADIIADSLRGMGHREKAWIKRPREEAIRFVLPQLEAGDAVV 451

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHE   I+    K    D + +R  L
Sbjct: 452 IAGKGHEDYQILGT-TKHHYSDQETVRTWL 480


>gi|171462982|ref|YP_001797095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192520|gb|ACB43481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 516

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 161/495 (32%), Positives = 231/495 (46%), Gaps = 40/495 (8%)

Query: 33  VSSDSRHIQAGWIFVAIV-GNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           V +DSR IQ+G IF A   G+     DG  FI  A+  GA A+V    + L+D  + +  
Sbjct: 26  VCADSRQIQSGDIFFAYPVGHGNALRDGRQFINAALENGAAAVV----FDLKDMDSQLTD 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +     V N         S+ YG   +  NI+ VTGT+GK+S+  ++ Q    S   +  
Sbjct: 82  HPQCFAVKNLAAQAGQLCSQWYGHPSKELNIIGVTGTNGKTSITQWLAQALDASNHRTAV 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   T           TTP    L   L+ L + G   V++E SSH L Q R+ G  + 
Sbjct: 142 LGTLGTGFPGALVQTGYTTPDAPKLQTQLAELRNAGAKQVAMEVSSHALHQERIAGTDIQ 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-----VMKRA 260
             +FTNL +DH+DYH +   Y  AK +LF++       A+I  DDA+ +E     + K  
Sbjct: 202 CAAFTNLTQDHLDYHGSMGDYAEAKAKLFQQ--AGLKHAVINLDDAFGRELAMNLLAKDG 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----------KDFDFLFPLPGEF 310
                  LS      F            ++ T+S  G                 PL GEF
Sbjct: 260 MKVWAYALSPSAFEGFEKFGDRLQRIYAKETTLSGAGYDSIFVYGKVGSAQLHIPLLGEF 319

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYAHTS 366
            V NAL      ++ G+   +  + + +L+ V GR E +       +      VDYAHT 
Sbjct: 320 NVSNALAVWATLLSQGMRCEVAAQKVSQLNPVLGRMELIRFGKPQKAGSLLAVVDYAHTP 379

Query: 367 NSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++LE  L+ +R +     G+I  VFGCGGDRD GKR +MG +A   AD  ++T DNPRSE
Sbjct: 380 DALEKTLQALRPVADQRGGKIWCVFGCGGDRDAGKRALMGAVAERNADHILITSDNPRSE 439

Query: 424 DPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I   I  GI           +R  AI  AI   + +D+++VAGKGHET   + NG+
Sbjct: 440 DPQAIMQMIRGGIQAESQNIQMIADRAAAIMAAIRHADARDIVLVAGKGHETTQEI-NGK 498

Query: 480 KKMSVDCDIIREILG 494
           K    D + IR   G
Sbjct: 499 KFDFSDQEHIRLAAG 513


>gi|332976289|gb|EGK13149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desmospora sp. 8437]
          Length = 399

 Score =  319 bits (817), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 134/395 (33%), Positives = 203/395 (51%), Gaps = 19/395 (4%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171
           H  N++AVTGT+GK++V   ++ I +  G  +  IG  +  I       + TTP  + L 
Sbjct: 6   HDLNLIAVTGTNGKTTVTHLIRNILRECGHETGLIGTINMQIGDETYPVKNTTPDAVELQ 65

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +    +  +G TH  +EASSH L   R  G +     FTNL +DH+DYH T   Y  AK 
Sbjct: 66  RGFRKMVDRGCTHAVIEASSHALHLGRTRGCRFKTAVFTNLTQDHLDYHGTMDHYRAAKG 125

Query: 232 RLFEELLPKES-------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVC 283
            LF +L    +        A++  DD   +  M+       +V++ G +    +  + + 
Sbjct: 126 ILFGQLGNVYTDKAEDQPLAVLNIDDEAGEIYME---TTSAQVITYGVEHPADVRGENIR 182

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 + T++      D    L G+F VYNAL AA + +  GI    + E L ++  VP
Sbjct: 183 FYSGGTRFTLNTYRGSVDIDMKLMGKFSVYNALAAAAVALGEGISLEKIGEVLSRVKGVP 242

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E V    +   + VDYAHT +SLE +L  +R  T G II V GCGGDRD+GKRP M 
Sbjct: 243 GRLEAVDA-GQPFPVLVDYAHTPDSLENVLTTVRGFTKGNIICVVGCGGDRDRGKRPQMA 301

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-----KGNRIEAIRTAIEMLNK 458
           +IA + ++  ++T DNPR+EDP +I  +++ G+  F E       +R EAI  A+     
Sbjct: 302 RIAAENSNRVVITSDNPRTEDPRRIIDDMLAGVKDFPEDRIQVIPDRAEAIGYAVRHAQA 361

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            DV+++AGKGHET   + NG +    D ++ R  +
Sbjct: 362 DDVVLIAGKGHETYQEI-NGVRHDFDDREVARTAI 395


>gi|261414980|ref|YP_003248663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371436|gb|ACX74181.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326475|gb|ADL25676.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 473

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 147/466 (31%), Positives = 230/466 (49%), Gaps = 19/466 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +  DSR ++ G +F +I            +A A+   AI   +   + +  A     
Sbjct: 12  VTGLCDDSRRVKPGNLFFSIPAEGY-------EAFAR--SAIAAGAVAVVGETMAPEGLT 62

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  + V + +      A   Y      ++   +TGT+GK++ A  +  + +  G  +  +
Sbjct: 63  SKWIQVPDVKAARLEAAKIFYKDPFSKLICHAITGTNGKTTSAFLMNAMLEAEGRKTALL 122

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I   +    LTTP  + L +  S   ++G T + +EASSH L Q R+ GI+  +
Sbjct: 123 GTIKNKIGDKSVPASLTTPGLLDLYEFASRAVAEGCTDLVMEASSHSLHQGRVAGIRFRS 182

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G F+NL +DH+DYH+T  AYF AK  LF + L +   A+I  DDA+ +++          
Sbjct: 183 GLFSNLTQDHLDYHKTMDAYFEAKKLLFTKYLAENGVAVINIDDAHGEKLFNALDCRKVA 242

Query: 267 VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V  +G  +       ++ +  +  + T+ +   D  F  PL G+F V N L+      A+
Sbjct: 243 VSRLGKAKADVKPFGEIKSTEDGLEFTLPMIATD-KFETPLCGDFNVDNLLLVLAWAHAL 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    + + +  +  VPGRFE V +   G  + VDYAHT ++LE +L   R++  G++ 
Sbjct: 302 CVPEDAMRKAITTVR-VPGRFEKVWSK-DGKHVIVDYAHTPDALERVLNVARSLCRGKLS 359

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKG 443
            VFGCGGDRD+ KRPIMG IA  +AD A +T DNPR+E P  I A++  G+    F    
Sbjct: 360 TVFGCGGDRDKTKRPIMGGIAERIADKAWLTSDNPRTEKPADIIADVRAGMTTDKFEVVE 419

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           NR EAI  A   L   D LV+AGKGHE   I+    K    D +I 
Sbjct: 420 NREEAINRACAELKSGDWLVIAGKGHEDYQIIGK-TKHHFDDREIA 464


>gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 513

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 154/503 (30%), Positives = 236/503 (46%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +L+ KD+P  +   SI        +I  V   ++ ++ G IF+   G K  G  F+
Sbjct: 25  LQLAELL-KDWPCSVTGGSIR------TEITGVEDYAQAVRPGDIFIVRKGKKTSGSRFV 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+A+GA AIV   + SL      I    P + V NT  FLS  +++L     E  +++
Sbjct: 78  KEALARGAAAIVSEESISLP----IIDKEIPFVWVPNTALFLSYASAKLAAFPAEALSVI 133

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP----SPIYLAKAL 174
           A+TGT+GK++V+ FV Q+       +  IG         +               L   L
Sbjct: 134 AITGTNGKTTVSHFVSQLLNALHKKAAVIGTIGFYLDGEKQQTSYEELTTLQAKELHPIL 193

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +GV+HV +EASS GL QHRLD   +  G F NL  DH++ H   +AY  AK RL 
Sbjct: 194 KQCVRKGVSHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLA 253

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293
           +         ++  DD + + V        C   S G+     +H++ V     K  + +
Sbjct: 254 D----LSKKLVLNGDDNFCRSVGIYDKKKSC---SFGFDNHNDLHIQIVSETVGKTVLCL 306

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +     P  G++ V N + A      +G     ++EH+  L +  GR E +  N 
Sbjct: 307 QTSASEHIIEIPFVGKYHVQNTVAALMAVWRLGTPMDDIVEHMWSLRLPEGRLEKID-NP 365

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  +YVDYAHT+ +L+ +L+      S  I +VF CGG+RD+ KR  MG +A   AD+ 
Sbjct: 366 VGIDVYVDYAHTAEALQAVLQTFD--RSKTIYLVFSCGGNRDKAKRFAMGAVASKYADVI 423

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPR EDP  I   II G      +    +R  AI  A+    K D+++VAGKGHE
Sbjct: 424 YLTTDNPRDEDPIIINESIIAGFTEQQYYEIYLDRKVAIHQALAKAKKGDIVLVAGKGHE 483

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               + N +K    D   I++  
Sbjct: 484 QTQQIKN-QKFPFSDQQCIKDYF 505


>gi|300858819|ref|YP_003783802.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686273|gb|ADK29195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206524|gb|ADL10866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis C231]
 gi|302331079|gb|ADL21273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276766|gb|ADO26665.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis I19]
          Length = 503

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 157/482 (32%), Positives = 241/482 (50%), Gaps = 19/482 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  I E+S DS+ +  G +F A+ G +  G  +  +     A AI+  +A +     + 
Sbjct: 26  KDIVIEEISLDSQELPQGGLFAALPGTRSHGAKYAQETQ---AAAILTDAAGAEILRESG 82

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
                P LVV+N R  L   ++ +YG+  +   I+ +TGTSGK++ +  ++     +G S
Sbjct: 83  --DTRPRLVVENVRGILGTVSAEIYGRPSDSLQIIGITGTSGKTTTSYMLEAGLINAGKS 140

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG T T I+      +LTTP    L K  + + +QGVTHV +E SSH L   R+   
Sbjct: 141 VGLIGTTGTRINGVKIPTKLTTPEAPTLQKLFAQMLTQGVTHVVMEVSSHALSLGRVSAT 200

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAH 261
              A  FTNL +DH+D+H T + YF AK  LF+          +I  D+ +  ++++R+ 
Sbjct: 201 HFAAAGFTNLSQDHLDFHPTMEEYFEAKALLFDPASSVHTKKTVICIDEPWGLQMLERSG 260

Query: 262 NAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                V ++   Q  F+           Q+  ++ E  +     P+PG F V NA +A G
Sbjct: 261 AEALSVSMASDTQADFVVSNLTVDAAGGQRFVVTHEDDEIAVDLPIPGAFNVANAALAIG 320

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L  ++GID    +  L  +  VPGR E V    +     VDYAH   ++  +L+ +R   
Sbjct: 321 LASSVGIDLDRFVAGLTAVS-VPGRMERVN-RGQDFLAIVDYAHKPAAVAAVLEAVRRQA 378

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           +GR+ +V G GGDRD+ KR IMGK +   AD+ IVTDDNPRSEDP  IR  I+ G     
Sbjct: 379 AGRVAIVVGAGGDRDRSKRAIMGKESALRADLVIVTDDNPRSEDPALIREAILTGAQKAA 438

Query: 441 ------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                 E G+R EAI+ A+      D +++AGKGHE   ++  G      D + +   L 
Sbjct: 439 TTAEIREVGDRREAIKQAVAWAQPTDAVIIAGKGHEVGQLI-QGINHHFDDKEELAIALE 497

Query: 495 LI 496
            I
Sbjct: 498 EI 499


>gi|158316860|ref|YP_001509368.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
 gi|158112265|gb|ABW14462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
          Length = 513

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 159/498 (31%), Positives = 249/498 (50%), Gaps = 24/498 (4%)

Query: 11  FPELINQLSIFP-----MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            P+++  +++ P            +  V+ DSR +  G ++ A+ G    G  F   A+A
Sbjct: 19  LPDVLRSITVAPGPSGGAALAGVVLTGVTHDSRAVLPGDLYAALPGAHVHGADFAAGAVA 78

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
            GA A++     +    + + R   P+LV D+ R+ L+  A+ +YG       +L VTGT
Sbjct: 79  AGAVAVLTDPVGAA---ALSGRLAVPVLVTDDPRRDLAPAAAWIYGDPSSALTLLGVTGT 135

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++ A  +    + +G ++  +G   T ++     +  TTP    L   L+ +  +GV
Sbjct: 136 NGKTTTAFLLDAGLRAAGYTTGLLGTVQTRVAGTVVPSVRTTPESGDLQALLATMVERGV 195

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              S+E SSH L QHR+D ++    +FTNL +DH+D+H T + YF AK  LFE    + +
Sbjct: 196 GAASMEVSSHALAQHRVDALRFAGAAFTNLSQDHLDFHPTMEDYFAAKAALFEP--ARSA 253

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFD 301
            A++  DD + + +   A     R  SV  +      + V A         +  +G   D
Sbjct: 254 AAVVCVDDDWGRRLA--ALRPDARTYSVTGRPADWWPEDVVAGPGGSVFRALGPDGAKAD 311

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG F V NAL A  L  A+G+      E +  L  VPGR E +    +     VD
Sbjct: 312 LSLALPGRFNVANALGALALLAAVGVPLEAAAEGISSLPGVPGRMERIDA-GQPFLALVD 370

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT  ++E +L  +R I +GR++VV GCGGDRD+ KRP+MG  A  LAD+A+ T DNPR
Sbjct: 371 YAHTPGAVETLLATVRPIVTGRVVVVLGCGGDRDRAKRPLMGAAAARLADLAVFTSDNPR 430

Query: 422 SEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           SEDP +I  +++       G    + + +R  AI  A+      D ++VAGKGHE+   V
Sbjct: 431 SEDPARILEQMLAGARGAPGAGEIVVEPDRASAIALAVGAAGPTDAVIVAGKGHESGQDV 490

Query: 476 TNGEKKMSVDCDIIREIL 493
             G      D +++R  L
Sbjct: 491 A-GVVTPFDDREVLRSAL 507


>gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
 gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
          Length = 508

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 130/509 (25%), Positives = 231/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  IV S             SN   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQKGSNVIVCSRDVDF------YSSNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV   +  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYHIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSNMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDFYSSDFKNAVKKSF--TYSLKSSKADFFVSFIDEKTDFTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   +  D   +++ L+ +  + GR + + 
Sbjct: 292 EFYHKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLDCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIVLCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I+    +    + ++++  +
Sbjct: 471 LGKGHESS-IIYKNREVFWNEQEVVKNAI 498


>gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
 gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
          Length = 482

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 141/499 (28%), Positives = 229/499 (45%), Gaps = 39/499 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKE--DGHLFIPQAI 64
            P L    ++F  +  E  +  ++ DSR ++ G++FVA+ G    +++  DGH F+P+A+
Sbjct: 1   MPTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTG 122
           A+GA A+V     +L           P L V + R+ L+L A R +G+    +L   VTG
Sbjct: 61  ARGAVAVVGEKPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           + GKS+ AS +  + +R+   S     +G      +       TTP    +   L   + 
Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAAD 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-HIDYHQTQQAYFNAKMRLFEELL 238
           +G+    +E SSH L   R++G+    G F N   D H+D+H T +AYF AK  L E   
Sbjct: 172 RGLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVER-- 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A++     +   + ++ H      LS G +G  ++ + +          +     
Sbjct: 230 --SDLAVLARSLPHFPRLAQKPH------LSFG-EGGEVYAEGLRETPEGLAFRLHTPWG 280

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +   PL G + + NAL A+   +A+G+    VLE L     VPGR E V       R+
Sbjct: 281 SGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVVLKA--PFRV 338

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +D+AHT  SLE  LK +R  T GR+++V G  G+RD  +R  +G++A  LAD    T++
Sbjct: 339 VIDFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFFTEE 398

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           + R ED   I   +          +    +R EAI  AI      D +++AGKGHE    
Sbjct: 399 DHRGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVLLAGKGHEATLE 458

Query: 475 VTNGEKKMSVDCDIIREIL 493
                     + +   + L
Sbjct: 459 RGQVALPW-NEREAALKAL 476


>gi|306824884|ref|ZP_07458228.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433095|gb|EFM36067.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 481

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 139/500 (27%), Positives = 226/500 (45%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++ G +F A  G       ++  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNYNEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P++VV++ +K +SL A   YG   E +  LA 
Sbjct: 66  AISQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      +T+       +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      L
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K S A++   D     V+K              +  F   +    I N +  + S  G
Sbjct: 232 LMKNSRAVVINSDMDHFSVLKEQVEHQ--------EHDFYGSQSSNQIDNSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLENIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N++ D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  I    L
Sbjct: 462 IVQGKKEDYPGDAAIAERYL 481


>gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
 gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
          Length = 501

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 142/483 (29%), Positives = 222/483 (45%), Gaps = 26/483 (5%)

Query: 22  PMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            + W  +++   + +DSR IQ G  F+A  G   DG   +  A+A+GA A +V      +
Sbjct: 13  AVDWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVE----CE 68

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
                  +   I  +   +    + AS  +G   + +  LAVTGT+GK+S A ++     
Sbjct: 69  GVEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTNGKTSTAWWLADALN 128

Query: 139 RSGLS-------SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +              +G     +    Q   +TTP P+ L +A +  +  G    ++EAS
Sbjct: 129 QLSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQFAEAGHRACAIEAS 188

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S GL +HRLDG ++    FTN  +DH+DYH    AY+ AK  LF+   P    A++  DD
Sbjct: 189 SIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFD--WPGLRAAVVNVDD 246

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                +      +   + S+  QG      K +        +T++           + G 
Sbjct: 247 PQGAALHAELQGSDLDLWSISLQGPARLQAKHIVHTGAGLALTVAEGAHTEVLQTQVIGL 306

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + V N L       A+G+  A  L+   +L  VPGR E +    +   + VDYAHT ++L
Sbjct: 307 YNVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQ-PLVAVDYAHTPDAL 365

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L  ++ +     GR+  VFGCGG+RD GKRP+MG +A   AD  IVT DNPR E+P+
Sbjct: 366 HQALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRGEEPQ 425

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ G         + +R  AI  A+      DV+++AGKGHE       G++   
Sbjct: 426 SIIHQILLGTIAGTSVRAEVDRAAAIAQALAEAGANDVVLIAGKGHEDYQE-AAGQRVPF 484

Query: 484 VDC 486
            D 
Sbjct: 485 SDM 487


>gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 509

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 146/477 (30%), Positives = 217/477 (45%), Gaps = 34/477 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           E+SSDSR I AG +F A  G+  DG  FI  AI +GA A+V  +   +   +A    + P
Sbjct: 20  ELSSDSRSIVAGDVFFAYPGDAADGRRFIDDAIERGAVAVVCEADGLVWHGAA----DFP 75

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V   +      A+  YG+    +  +A+TGT+GK+S + ++     R       IG 
Sbjct: 76  LLAVTGLKAHAGRVAALWYGQADAGLFTVAITGTNGKTSCSQWLAAALSRLTGPCAVIGT 135

Query: 150 TSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             T            +   TTP  I L + L  L   G + +++EASS GLDQ RL+G+ 
Sbjct: 136 LGTGLFRRGSVDRLAETGYTTPDAILLQRRLRDLRRAGASALAIEASSIGLDQGRLNGLP 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTN  RDH+DYH     Y  AK  LF++  P    A++  DDA    ++      
Sbjct: 196 VQVALFTNFTRDHLDYHGDMATYEAAKTALFDQ--PGLQHAVLNLDDAMGLRLLAHLQRT 253

Query: 264 GCRVLSVGYQGKF--------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             ++   GY            +    + + H      +            L G F V N 
Sbjct: 254 APQLALTGYTLTDLQPAGITVLRAGDIRSSHAGTSFQLMTAAGTMLVRTRLVGSFNVSNV 313

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L   G+ +A       +++ +E L  VPGR +  G       + +DYAHT ++L+  L  
Sbjct: 314 LGIIGVLLAQDCPLRAIVDAIETLTAVPGRMQQFG-GQDAPLVVIDYAHTPDALDKTLAA 372

Query: 376 IRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           ++ +     G++  VFGCGGDRD GKRP MG  AL  AD  I+T DNPRSE    I A+ 
Sbjct: 373 LQQVAAQRHGKLWCVFGCGGDRDPGKRPQMGLAALA-ADEIIITSDNPRSEVAAAIIAQT 431

Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + G           +   +R  AI  A+      DV+++AGKGHE    +   +   
Sbjct: 432 LQGTDERADSHAVPLVIEDRAAAILWAVRHAANADVILLAGKGHENYQEIRGKKLPF 488


>gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 513

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 135/498 (27%), Positives = 233/498 (46%), Gaps = 33/498 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+++++     E  + L       +  ++  ++ +S  I+ G++F+AI G K+DGH++I
Sbjct: 27  MKIKEMLTMGHLEYSDTLD------QSLEVKGITDNSNEIKPGYVFIAIKGYKKDGHIYI 80

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QAI  GA  I+  +          +    P L V + RK L   A   Y    ++  ++
Sbjct: 81  QQAIINGAILIIGENEL--------MNLEVPYLKVKSARKALGQVAKLFYKDPSKDKIMI 132

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++ F++ + ++ G S   IG     I+        TTP+   + + L   
Sbjct: 133 GITGTNGKTTISFFIKHLLEKQGYSVSSIGTIHNEINGKKIKTINTTPNAKTINQLLVAS 192

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + Q    V +E SS GL+Q RL+GI+     F NL  DH+DYH T + YF  K  LF++L
Sbjct: 193 TDQ---VVVMEVSSQGLEQDRLEGIQFDYALFNNLQHDHLDYHNTMEEYFECKALLFQKL 249

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    AII +DD++  ++++     G ++L+VG Q                 V++  + 
Sbjct: 250 KP-NGTAIINSDDSWGLKLIEHLTAEGKKILTVGEQS---FSNVQILSKELNDVSVMHKN 305

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            ++    PLPG   +YN  +++     +G+    V  ++     + GRFE     +    
Sbjct: 306 MEYSLRTPLPGMHNLYNLSMSSCAVHELGVPYEKVKPYMSDFTGISGRFELFHLENN-VT 364

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE+ +       +  II VFG  G+RD  KR  M +I   L+D +I+T 
Sbjct: 365 VVVDYAHTPDALEIAINTAINNGANHIITVFGFAGNRDTSKRKAMLEIVTRLSDSSILTV 424

Query: 418 DNPRSEDPEKIRAE---IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                   +K+  +   I              +R  AI+ AI+     D +++ GKGHE 
Sbjct: 425 TELFGSTIDKLYTDYVMIQKECQVEDSTSIIMDRTLAIQKAIKDAQPGDWVLLLGKGHEL 484

Query: 472 VHIVTNGEKKMSVDCDII 489
                N       D + +
Sbjct: 485 YKE--NYNLNTKSDQETV 500


>gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
 gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
          Length = 526

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 138/495 (27%), Positives = 226/495 (45%), Gaps = 25/495 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + Q++  P+  R      ++  S   ++ W+FVAI G K+ G  F   AI  GA  ++  
Sbjct: 35  LAQIAESPLSLR-----GITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTD 89

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
                Q F   +    P++ V + R  +    + +Y      +  +AVTGT+GK++ +  
Sbjct: 90  EDGRAQAFERGL--GVPVIQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYL 147

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           ++        ++   G   T +   + +   TT     +A+ L+           +E S+
Sbjct: 148 MRAAIASRFPNASLCGTVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSA 207

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L  HR+DGI     +FTNL  DH+DY+   + YF AK  LF     +     +  DD 
Sbjct: 208 HALSLHRVDGIVFDVAAFTNLQHDHLDYYGDMENYFQAKALLFTPEHSRHGV--VCVDDE 265

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPG 308
           + + + ++A      V ++  +     ++ V       +   ++    G       P+ G
Sbjct: 266 WGRRLAQQATVPVTTVSALTEETADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILG 325

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSN 367
           E  + N  VA    +++GID A V+  +E    +PGR E V  T      + VDYAHT  
Sbjct: 326 EVNIQNTAVAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPE 385

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +LE  L++ R +TSGR++VVFG  GDRD  KR  + +IA   AD+  VTD+NPR+E P++
Sbjct: 386 ALEWTLRSTRELTSGRVVVVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQE 445

Query: 428 IRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           IR  ++ GI                R +A+R AI      D +++ GKG E    V  G 
Sbjct: 446 IRDYLLRGIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAEWYQEV-QGI 504

Query: 480 KKMSVDCDIIREILG 494
                D  +  E+L 
Sbjct: 505 HHRYNDVPVAAEVLA 519


>gi|260434604|ref|ZP_05788574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
 gi|260412478|gb|EEX05774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
          Length = 497

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 146/498 (29%), Positives = 238/498 (47%), Gaps = 19/498 (3%)

Query: 14  LINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+    I  P       +  +++DSR +  G +F+ + G + DG  F  QA+        
Sbjct: 4   LLRDAGIAVPPGLVNPGLEAITTDSRRVGPGTLFLGLPGERVDGGSFWAQALE---AGAA 60

Query: 73  VSSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
            +   +    +    ++ P++V+ ++  + +   ++  +        ++ VTGT+GK++ 
Sbjct: 61  AAVIGAAAAAAKPPAADDPVVVIQESVARRIGELSAAYWDHPCRRMVLIGVTGTNGKTTT 120

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ +   +G S    G         +     TT     L   L+  +S G    ++E
Sbjct: 121 THLIEHLAASTGQSVGLFGTLVNRWPGHSITATHTTAFADRLQGQLAEAASAGCCLAAME 180

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAII 246
            SSH L Q R+ G +     FTNL +DH+DYH + + YF AK  LF +  LL     +++
Sbjct: 181 VSSHALAQQRVAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGVRSVV 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            +DD +   + +R   A  R  S+      +H+  +       +  +     +  F  PL
Sbjct: 241 NSDDPWGARLAERLGAACWRS-SLEDPSAELHMSDLQMTAAGVEGRLISPAGEGRFRSPL 299

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDY 362
            G F + N L A G+ +   +   ++LE + +   VPGR E V  N         + VDY
Sbjct: 300 LGRFNLMNLLQAVGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAVNLPPVLVDY 359

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + L+  L   R   +GR+I VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+
Sbjct: 360 AHTPDGLDNALSAARPFCTGRLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRT 419

Query: 423 EDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP++I  +++ GIP     + +G+R +AI +AI      D+++VAGKGHE   I+   E
Sbjct: 420 EDPQRILDDVVAGIPAGSDLLVEGDRAKAIASAIAEAEPDDLVLVAGKGHEDYQILGT-E 478

Query: 480 KKMSVDCDIIREILGLIL 497
           K    D +     L L L
Sbjct: 479 KVHFDDREEAERALRLRL 496


>gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
 gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
          Length = 498

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 138/495 (27%), Positives = 227/495 (45%), Gaps = 24/495 (4%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  ++I+ + I  +  +    +N +S DSR I  G +FVAI G   DGH FI + I QGA
Sbjct: 2   NILDIIDNIKIKTIYGKLPDSVNSISQDSRKIGKGDVFVAIKGYTVDGHNFIEKVIEQGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             ++ S       +      N  +LVV      K  S+ A ++      + +AVTGT+GK
Sbjct: 62  ALVIASR------YENYNVENCAVLVVREHEIEKIASMIAKKINEGADIHTVAVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTH 184
           +S+++ V  + +  G SS  IG      +  +      TTP  + L   +  L  + + +
Sbjct: 116 TSISTLVHNMLRNLGESSAYIGTNGFGKNDDEPIYFGNTTPDVVTLHNQIGELRHENIKN 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
           ++ EASSH +   R+  + +    FTNL  +H+D+H   Q Y   K  LF  L   L + 
Sbjct: 176 LAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEA 235

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEG 297
              ++  DD+Y K + K  +       S+  +    +   +         K   T+    
Sbjct: 236 KFGVLNKDDSYYKIISKCLYQQEIN-YSIKDETADFYAYNIKQFKEDKIYKTSFTLKSPE 294

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F+      G+F V N L A       G     ++  L KL  + GR E +G +     
Sbjct: 295 GTFECTTNYIGDFMVSNVLAALSAVWVKGYSVEQLVNILPKLGALYGRMEILG-DDLPID 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           I  D+AHT +  E +L+  R I  G+  ++V G GG RD  K P++G+I  + AD  ++T
Sbjct: 354 IISDFAHTPDGYEKLLEATREIRKGKRTLLVTGMGGGRDISKGPLIGEIISE-ADYVVIT 412

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            D+PR ED E +   I  G+    + +   R +A++  IE+    DV+++A KG E   I
Sbjct: 413 TDSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSKPGDVVILASKGREDYEI 472

Query: 475 VTNGEKKMSVDCDII 489
           +  G+K    D  + 
Sbjct: 473 LQGGKKVWHSDPIVA 487


>gi|255325349|ref|ZP_05366455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297914|gb|EET77225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
          Length = 511

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 162/482 (33%), Positives = 241/482 (50%), Gaps = 26/482 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +++    DS  +  G +F A+ G +  G  F        A A++  +A    D     +
Sbjct: 22  VEVSACGLDSSRLPEGALFAALPGTRVHGAQFARDTK---AGAVLTDAAG--LDLLTKDQ 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA---SFVQQICQRSGLSS 144
              PI+VV++ R  L   ++ +YG HP   L V G +G S        ++     +G S 
Sbjct: 77  ETRPIVVVEDIRAVLGPISAEIYG-HPTRDLTVIGVTGTSGKTTTSYLLEAGLLHAGHSV 135

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG T T I+       LTTP    L +  + + ++GVTHV +E SSH L+  R+ G +
Sbjct: 136 GLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVMEVSSHALELGRVRGTR 195

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTNL +DH+D+H T + YF AK +LF      E  A++  DD + + +   A +A
Sbjct: 196 FAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAER-AVLCIDDEWGERMRGVAKSA 254

Query: 264 GCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           G  V +V  QG    +   +        Q+V ++ +G DF F  PLPGEF + NA +A G
Sbjct: 255 GHPVTTVATQGAAATISARQTATEATGAQEVALNYDGADFTFRLPLPGEFNIANACLALG 314

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--- 377
           +  A+G D A  L  +EK+  VPGR E +    +     VDYAH   ++  +L  +R   
Sbjct: 315 MATAVGEDPAEFLSGVEKV-AVPGRMERID-RGQDFVAVVDYAHKPAAIAAVLDTLRGQL 372

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             T+GR+ +V G GGDRD  KRPIMG  A   AD+ +VTDDNPRSEDP  IRA ++ G  
Sbjct: 373 EGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPRSEDPATIRAAVVEGAR 432

Query: 438 GFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
               +G+      R  AI   ++     D ++V GKGHE   +V NG+     D + +  
Sbjct: 433 DAAPEGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV-NGKTLHFDDREEMAR 491

Query: 492 IL 493
            +
Sbjct: 492 AI 493


>gi|296129438|ref|YP_003636688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
 gi|296021253|gb|ADG74489.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
          Length = 520

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 151/496 (30%), Positives = 223/496 (44%), Gaps = 28/496 (5%)

Query: 13  ELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           +L   L +  +           V+  S  ++ G +FVA+ G K  G  F   A+A+GA A
Sbjct: 20  DLAADLDLVTVGAPAAGLTFTGVTMSSTDVEPGDLFVAVPGLKVHGARFAADAVARGAVA 79

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++        D  A +  + P+LV  + R      AS   G     ++ V  T       
Sbjct: 80  VLTD-----DDGVAAVPPDVPVLVAHDPRSLAGPVASWALGNPASRLVTVGVTGTNGKTT 134

Query: 131 --SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
              FV    +     +  +G     I   A ++  TT     L   L+    +G   ++ 
Sbjct: 135 TTYFVDAALRAHHARTAVLGTVELRIGDDAVESPRTTVEAPVLQALLAVAHERGAGALTT 194

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+ G +     FTNL RDH+D+H   + YF  K RLF     +    ++ 
Sbjct: 195 EVSSHALALGRVLGTRFDVVGFTNLQRDHLDFHGDMEGYFRDKARLFAPEQARRGVVVV- 253

Query: 248 ADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLK-----KVCAIHNKQQVTIS-VEGKDF 300
            DDA+ + + + A      V + VG               V       +  +   +G   
Sbjct: 254 -DDAWGRRLAEEAAIPVETVSTHVGAPEAAGATWAVVEADVGLDGVGSRFVLRGPDGARH 312

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GRIY 359
               PLPG   V NA +A  L  A G+  A  +E +   H +PGR E V     G     
Sbjct: 313 VAHSPLPGLVNVSNAALAIVLAHAAGVPLATAIEAVGGAHAIPGRMERVVERGDGWPLCL 372

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++L + L+ +R IT GR+++VFG  GDRD+GKRPIMG+IA  LAD+ +VTD+N
Sbjct: 373 VDYAHTPDALVLALEAVRPITPGRLVIVFGSDGDRDRGKRPIMGEIAARLADVLVVTDEN 432

Query: 420 PRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PRSEDP  +RA I+ G+           E  +R +AIR A+ +    D ++V GKGHE  
Sbjct: 433 PRSEDPASVRAAILAGVRDVRPDLADVHEATSRAQAIRDALRLAGPDDTVIVTGKGHEPT 492

Query: 473 HIVTNGEKKMSVDCDI 488
             +  G      D D+
Sbjct: 493 QEIA-GVFHRYNDRDV 507


>gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi N40]
          Length = 508

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 130/509 (25%), Positives = 230/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I  V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENI-- 117
            AI +G+  IV S             S+   + VD+   RKF+S F++  Y +  + +  
Sbjct: 60  IAIQRGSNVIVCSRDLDF------YSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +     S+        +  +    +  + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSF--TYSLKSSKADFFVSFIDEKTDSTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR + + 
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 352 L-GQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I+    +    + ++++  +
Sbjct: 471 LGKGHESS-IIYKNREVFWNEQEVVKNAI 498


>gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
 gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
          Length = 496

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 142/478 (29%), Positives = 236/478 (49%), Gaps = 22/478 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +  +   +++S+      +FVA+VG  +DGH F+ +AIA GA AI+   A      
Sbjct: 8   LGAEDIVVRSCAANSKLCLPDDLFVAMVGAHQDGHDFVEEAIANGASAILSERA------ 61

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
              + +  P+ +V+NT+   +     L G   + +  + VTGT+GK++V   +Q I + +
Sbjct: 62  ---LPTTRPVCIVENTQSAYAQICQALAGDPSKRMRVIGVTGTNGKTTVCRLIQSIMETA 118

Query: 141 GLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G +          + +  Q    TTP+   LA  LS +   G TH  VEASS  L + RL
Sbjct: 119 GATVGMSSSLGYDNGYDRQPWDCTTPNAAVLADLLSRMEYNGCTHAVVEASSEALSRDRL 178

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DGI+L A + TNL +DH+D H +   Y  AK ++    L +   A++ ADD+   +++ +
Sbjct: 179 DGIELDAVAITNLRQDHLDVHGSVTNYHRAKKKIL-GRLRETGFAVVNADDSACNKLLSQ 237

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   LSV   G       V   H  +Q   +S   +       + G+  VYN LVA
Sbjct: 238 IETP---ALSVALHGAAEITASVVERHKSEQTFLLSAGDETVPVCTRMIGDHHVYNCLVA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A + +  G+D   V+  LE++  +PGR + +    +   ++VD AHT ++L M LK +R 
Sbjct: 295 AAVGLVYGVDLKTVVRGLERVDSIPGRMQRIEC-GQPFGVFVDLAHTHDALAMALKALRR 353

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +T GR+I V+G  G  D  KRP++G++A   AD++++T  NP  E P ++  +I+ G   
Sbjct: 354 VTHGRVICVYGADGLGDPSKRPLLGRVAERGADLSLITSANPGDESPLEVIHDILDGYER 413

Query: 439 FIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                   NR  AI  A+      D +++AG+G   +  +   E  +  D  I +  L
Sbjct: 414 PARAHVMPNRAAAIEWALSEAQTGDTVLIAGRGTPNLQTLREEELPL-DDVQIAQSWL 470


>gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
 gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
          Length = 496

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 140/501 (27%), Positives = 242/501 (48%), Gaps = 27/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+++DL+         QL    ++    +I ++ +D+R++  G  FVAI G + DGH  +
Sbjct: 1   MQVEDLLRAVPS---GQLYGPEIKG---EITQLVNDTRNLVPGCAFVAIKGLQFDGHTAV 54

Query: 61  PQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
            Q  A GA+ +VV     + QD+  +        +V +T +  +L A++ +G+  E  N+
Sbjct: 55  DQVAAAGAKLMVVEVLPENWQDYPLS------FFLVPSTFRAQALLANQFFGRPTEQLNV 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AVTGT+GK++++S +  +  R G  +  IG     +      +  TTP+ + L +  + 
Sbjct: 109 VAVTGTNGKTTISSLISDLLMRLGHKTGLIGTLHYKVDQTYYPSINTTPNALALQQLFAE 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + S G     +EASSH L   RL    +    FTNL R+H+D+H+T + Y  AK  LF +
Sbjct: 169 MVSVGCQDALIEASSHALALGRLWATDIDCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQ 228

Query: 237 LLPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           L  K +      AII ADD Y+  +M +A +A     S+       +  ++      Q  
Sbjct: 229 LGQKFAGEGPRLAIINADDPYASIMM-QATSADVLTYSLEDPKASAYADQLAVQDGNQTF 287

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +    + +  + P+ G + V N + A   L     +    V++ +     V GR + + 
Sbjct: 288 RLHYRNQTYQVVSPMLGAYNVANFMAAFLCLVDYYHVQPQTVVDLMLSFGGVEGRMQRLD 347

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDL 409
              +  ++ VD+AHT +++E +L+ ++  +  R++ + G  GG+RD G RP +G    + 
Sbjct: 348 L-GQEFQVVVDFAHTPDAIERVLQELKAQSPKRLVTIIGHSGGNRDSGARPEIGDKVFEY 406

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +D  I T DNPR E   KI AE+I       +    +R  AI   I      D+LV AGK
Sbjct: 407 SDWIIFTADNPRHEPVAKICAELIGNHDEVPYQVIEDRKAAIDYVISQAQAGDLLVFAGK 466

Query: 468 GHETVHIVTNGEKKMSVDCDI 488
           G E   I+ + +       +I
Sbjct: 467 GSEPYQIIGDDKLPYDEVTEI 487


>gi|240254313|ref|NP_176555.4| MURE; ATP binding / acid-amino acid ligase/ ligase [Arabidopsis
           thaliana]
 gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein
           [Arabidopsis thaliana]
          Length = 772

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 135/518 (26%), Positives = 242/518 (46%), Gaps = 47/518 (9%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      + +I  +  DSR + AG +FV  +G++     F+ +A  +G
Sbjct: 243 LAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGSE----NFLSEADKRG 298

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A+V S    ++D          +++V++T   L+  AS  Y +HP   ++V G +G  
Sbjct: 299 AVAVVASKEIDIED----TLGCRALVIVEDTNAVLAALASSFY-RHPSKNMSVIGVTGTD 353

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQ 180
              +    I         + G  ST+S +          N    P  + +   ++ +   
Sbjct: 354 GKTTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHN 413

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
           G   + +EAS   L   + D +      FTNL R++ D+  T + Y +A+ +LF  ++ P
Sbjct: 414 GTESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDP 473

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEG 297
           +    ++  DD  +   +++  N    V++   +     +H  K      + QV ++   
Sbjct: 474 ERHRKVVNIDDPNAAFFVQQG-NPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQ 532

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G 
Sbjct: 533 GILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG- 591

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VD+A+T + L  +L +IR +   RII V GC G+ ++GKRP+M KIA + +D+ ++T 
Sbjct: 592 VIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTS 651

Query: 418 DNPRSEDPEKIRAEIIHGI----PGFIEKGN------------------RIEAIRTAIEM 455
           DNPR+EDP  I  +++ GI      +++ G                   R  A+R A+ M
Sbjct: 652 DNPRNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAM 711

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 712 GEEGDMVVVAGKGHEAYQ-LEGEKKEFYDDREECREAL 748


>gi|261855066|ref|YP_003262349.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
 gi|261835535|gb|ACX95302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
          Length = 519

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 149/519 (28%), Positives = 247/519 (47%), Gaps = 40/519 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M +     +   E+++ L++         +   ++ DSR +  G +F A  G + +   F
Sbjct: 1   MSMLAFSPRPIGEILSALNLLVADNVGSVVARVITDDSREVVPGAVFFARSGIQPNIKPF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I QA+A GA  +V  + Y+          +  ++ V+     +      +   + +++  
Sbjct: 61  ISQALAAGAVLVVTEADYA----------DPRVIRVEAVHSLVLQMVGHVCAVNFDDLTI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQ-----DNRLTTPSPIYLA 171
           + +TGT+GK+SVA F+     RSG      IG   T+ +        + + T  +   L 
Sbjct: 111 IGITGTNGKTSVAQFIAGALSRSGAPHTASIGMIGTLGAGMWSSGLENLQPTANTTPGLL 170

Query: 172 KALSYLSS---QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           + L Y      QG  +V +E SSH L+Q+RL G+ +    FTNL RDH+DYH T   YF 
Sbjct: 171 ETLRYAVDFIRQGARYVVMEVSSHALEQNRLQGLPIRLAVFTNLSRDHLDYHGTMAEYFA 230

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------- 281
           AK +LF    P     II  D+A + +V+  A  A     + G       +         
Sbjct: 231 AKTKLFA--WPGLRAGIINFDEAQA-DVLFEALGATADCWAYGLGDPDWRVADCQHVRVT 287

Query: 282 -VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            + A+ N   + +     +      L G F   N + A    +A+G+     ++ L++  
Sbjct: 288 SITALPNGIDIQVRTPLGEARLQPSLVGLFNGANIMAALAAVLALGMPLETAIKALDQST 347

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGK 398
             PGR + +   S G R  VDYAHT ++L+ +L+ +R     +G+II VFGCGGDRD+GK
Sbjct: 348 PPPGRMQMITLPS-GARALVDYAHTPDALDQVLRALRDHRDAAGKIICVFGCGGDRDRGK 406

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM 455
           RP+M   A  LAD  ++T DNPRSE P+ I A++  G+        + +R  AI +A+  
Sbjct: 407 RPLMAATAERLADQIVMTADNPRSEAPQAIIADMRGGLASPDTASVELDRRAAIESALMQ 466

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               D +++AGKGHET   +  G++    D  ++R+ + 
Sbjct: 467 AKAGDWVLIAGKGHETTQEI-QGQRLPFDDAAVVRDWIA 504


>gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 614

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 137/507 (27%), Positives = 230/507 (45%), Gaps = 22/507 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++L   +F ++         +  + +++ ++ DSR +  G +FV + G   DGH F   
Sbjct: 90  LRELF--EFGDVAVNEWTHLGEDEDVEVSGIADDSRVVLPGDVFVCVPGATFDGHDFALD 147

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
                      + A   +     +    P +VV +  K L   A+  YG   + +  + V
Sbjct: 148 ------AVAAGAVAVVCEGEIEGLTDEIPQVVVSSCAKALGKIAAAFYGSPSQQLTTVGV 201

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++    +Q I   + +S   +G     I     +   TTP  +   + L+ +  
Sbjct: 202 TGTNGKTTTTHLIQAILAANDVSCGVVGTVGYEIGDGKYEVPNTTPDALQTQQILAGMID 261

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G    ++E SSH L+  R+D        FTNL RDH+D+H + + Y  AK +LF +L  
Sbjct: 262 AGAGACAMEVSSHALELGRVDECDFDVAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTD 321

Query: 240 KESPAIIYAD--DAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292
                    D  D  +  +          +++   Q        + +  V     +  +T
Sbjct: 322 PARQRAKDRDTFDNAAYFIEAAGGGDRVPIITYATQPSKEGQADVFVSDVKLALFETTLT 381

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I     +F+ +  + G+  V N   A  + +A+ I   ++   +E++  VPGR E +   
Sbjct: 382 IQTPVGEFEAVCGVVGKINVTNIAAAVAVGVALEIPLDVIAAGVEEMTPVPGRMELID-E 440

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT ++L+  + ++R      +I VFGCGGDRD  KR  MG+IA   +DI
Sbjct: 441 GQPFSVIVDYAHTPDALKRAITSLRAANVRNVITVFGCGGDRDASKRKEMGEIADTYSDI 500

Query: 413 AIVTDDNPRSEDPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             VT+DNPR+EDP KI  +   +  +       +R  AIR AI M  + D +++ GKGHE
Sbjct: 501 VFVTNDNPRTEDPYKILDDTMQLQNMCRRYVIVDRWYAIRGAIAMAGEDDAVLICGKGHE 560

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
              IV  G K    D    R+ L  ++
Sbjct: 561 DY-IVVGGNKHWFDDRVEARDALRKVV 586


>gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
 gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
          Length = 488

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 146/479 (30%), Positives = 231/479 (48%), Gaps = 20/479 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + KI  + SDSR+++   IF  I G   DGH ++  A+ QGA+ IV S   +       
Sbjct: 12  NDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKDLN------Y 65

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                    V+NT   L+  ++  Y        I+ VTG+SGK+ VAS ++    +   S
Sbjct: 66  YHDKIIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKY-CS 124

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  IG  S   +   ++   TTP  +YL + L  ++  GV  V++EASSHGL   R+DGI
Sbjct: 125 SGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGI 184

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G +H+D+H T++ Y  AK +LFE + P    AI+ +DD     +     N
Sbjct: 185 NFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPT-GWAILNSDDLNFMTLKN---N 240

Query: 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              R+L+ G +    I  K +    +  +  IS +G  F    P+   F +YN L   G+
Sbjct: 241 TQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGV 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            IA+G D  +V++ +E +  + GR E + T  +   + +DY    ++ E I + +  +  
Sbjct: 301 LIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQ-FAVIIDYCQHISNYEAIFEYVDGVRQ 359

Query: 382 GR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           G   II V G  G R+   R  +G++A    D  I+T  + R ED  +I   I   I   
Sbjct: 360 GHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICKTIQKEIVDI 419

Query: 440 --IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             +   +R  AI  AIE+  K D++++ GKGHE    +  G+     D  I++E L  I
Sbjct: 420 NSVIIESRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQIVKEALERI 478


>gi|226360402|ref|YP_002778180.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238887|dbj|BAH49235.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Rhodococcus opacus B4]
          Length = 496

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 147/493 (29%), Positives = 229/493 (46%), Gaps = 25/493 (5%)

Query: 11  FPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            PE++ +L          +  +  ++ DSR ++AG ++ A+ G    G  F  +A ++GA
Sbjct: 14  LPEVLRRLGRSATLCGPGDAAVTGINQDSRLVRAGDMYAALPGRHRHGIEFAAEAASRGA 73

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            A++      +           P +VV + R+ L   AS +YG   E  ++  VTGT+GK
Sbjct: 74  VAMLSDRTSDV----------LPTIVVGDPRRILGPLASWMYGDPSEAFDVYGVTGTNGK 123

Query: 127 SSVASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S    +    + +G  +  + G T      ++    TTP    L + L+  + Q +  V
Sbjct: 124 TSTVYLLDAGLRAAGAVAGMMTGITVRGPGGSRSATRTTPEACELQQTLAAFAEQRIGAV 183

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSHGL  HR+DG     G FTNL RDH+D+H    AYF AK RLF+      + A 
Sbjct: 184 AMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFAAKARLFDPR--HCAAAA 241

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DD + + +            S       IH   V A       T+   G        
Sbjct: 242 IGIDDEFGRRLAATVTVPRL-TFSSRTTAADIHASGVHADEGGTSFTLHGAGDRISVRLR 300

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G  QV NAL A    +  G+D    +  +E L  VPGR E V    +    +VDY H 
Sbjct: 301 LLGVHQVDNALAAIAALVVRGVDPGAAIAGIEDLDTVPGRLEAVDA-GQPFFAFVDYMHN 359

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +     +   +R++T+GR+I V G  G+RD GKR  +G  A   AD  +VTD++P SED 
Sbjct: 360 TAGQRRLFPYLRSLTAGRVIAVVGATGERDPGKRAPLGATAARFADAVVVTDESPYSEDA 419

Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +++R ++  G         +   +R EAI  A+ +    DV+VVAG+GH+ V       +
Sbjct: 420 QRLREDVARGARSGGNADVLVVPDRTEAIAAAVTLAGPGDVVVVAGRGHDRVQAYGP-RR 478

Query: 481 KMSVDCDIIREIL 493
           ++  D   + E L
Sbjct: 479 RVFDDRIALHEAL 491


>gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
          Length = 552

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 145/505 (28%), Positives = 229/505 (45%), Gaps = 34/505 (6%)

Query: 11  FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL +QL +            ++ ++ DSR ++ G ++ A+ G +  G  F  QA + G
Sbjct: 17  LEELADQLGVDARGAETPAAVVLSGITHDSRAVRPGDVYAALPGARVHGADFSAQAASLG 76

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125
           A AI+   A +       + +  P+LVV + R  +   A+ LYG    ++L   +TGTSG
Sbjct: 77  AAAILTDPAGAGP----ALATGLPVLVVGDPRGRMGEVAATLYGHPGRDLLQIGITGTSG 132

Query: 126 KSSVASFVQQICQRS--------GLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKA 173
           K++ A  ++   + +        G      G   T    I      +  TTP    L   
Sbjct: 133 KTTTAYLIEGGLRAAQEARAKETGEEIPPTGLIGTVEMRIGDERIKSERTTPEATDLQAL 192

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + +  +GV  +++E SSH L   R+D        F NL  +H+++H   + YF AK +L
Sbjct: 193 FAVMRERGVRALAMEVSSHALVLGRVDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQL 252

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT- 292
           F +   K     +  DD Y + ++  +        + G+       + V         T 
Sbjct: 253 FTKARSKLGV--VNHDDEYGRRLLTESEVPVISFSAEGHPDADWRAEDVIVGSLDSTFTA 310

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  EG+      PL G F V N L A     A G+D     + +  +  VPGR E V   
Sbjct: 311 VGPEGQRISARSPLAGPFNVANTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERVDA- 369

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +     VDYAH ++++E +L+ +R +T GR+ +V GCGGDRD  KR  MG  A  LAD+
Sbjct: 370 GQPYLAVVDYAHKTDAVESVLRALRKVTEGRLYIVLGCGGDRDTTKRGPMGAAAARLADL 429

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A++T DNPRSEDP  I + ++ G            I   +R  AI  A+      D ++V
Sbjct: 430 AVLTSDNPRSEDPLAILSTMLAGAAEVPIHERGDVIIDADRAGAIAEAVVRAEAGDTVLV 489

Query: 465 AGKGHETVHIVTNGEKKMSVDCDII 489
           AGKGHE    + NG  +   D  ++
Sbjct: 490 AGKGHEQGQDI-NGVVRPFDDRLVL 513


>gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51679 [Arabidopsis
           thaliana]
          Length = 767

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 135/518 (26%), Positives = 242/518 (46%), Gaps = 47/518 (9%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      + +I  +  DSR + AG +FV  +G++     F+ +A  +G
Sbjct: 243 LAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGSE----NFLSEADKRG 298

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A+V S    ++D          +++V++T   L+  AS  Y +HP   ++V G +G  
Sbjct: 299 AVAVVASKEIDIED----TLGCRALVIVEDTNAVLAALASSFY-RHPSKNMSVIGVTGTD 353

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQ 180
              +    I         + G  ST+S +          N    P  + +   ++ +   
Sbjct: 354 GKTTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHN 413

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
           G   + +EAS   L   + D +      FTNL R++ D+  T + Y +A+ +LF  ++ P
Sbjct: 414 GTESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDP 473

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEG 297
           +    ++  DD  +   +++  N    V++   +     +H  K      + QV ++   
Sbjct: 474 ERHRKVVNIDDPNAAFFVQQG-NPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQ 532

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G 
Sbjct: 533 GILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG- 591

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VD+A+T + L  +L +IR +   RII V GC G+ ++GKRP+M KIA + +D+ ++T 
Sbjct: 592 VIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTS 651

Query: 418 DNPRSEDPEKIRAEIIHGI----PGFIEKGN------------------RIEAIRTAIEM 455
           DNPR+EDP  I  +++ GI      +++ G                   R  A+R A+ M
Sbjct: 652 DNPRNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAM 711

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 712 GEEGDMVVVAGKGHEAYQ-LEGEKKEFYDDREECREAL 748


>gi|227548908|ref|ZP_03978957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079036|gb|EEI16999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 545

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 159/482 (32%), Positives = 230/482 (47%), Gaps = 20/482 (4%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            W    I+ V  ++R +  G +F A+ G +  G  F   A    A AI+        D  
Sbjct: 37  GWAGVAISSVGLNAREVAPGGLFAALPGTRVHGAQF---AAESPARAILTDREG--LDIV 91

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
                  P+LVVD+ R  L   ++ +YG       ++ VTGTSGK++    +++    +G
Sbjct: 92  EAAGDRRPVLVVDDVRAVLGEVSAHVYGHPSRRMTLIGVTGTSGKTTTTYLLERGLIAAG 151

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                IG T T I        LTTP    L    + ++++GVTHV +E SSH L   R+D
Sbjct: 152 AQVGLIGTTGTRIRGRDVPTSLTTPEAPTLQALFARMAAEGVTHVVMEVSSHALSLGRVD 211

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKR 259
           G    A  FTNL +DH+D+H T   YF AK   F+   P   S +++  DD + + + + 
Sbjct: 212 GTSFDAAGFTNLSQDHLDFHPTMDDYFQAKAAFFDPSSPVAASASVVCVDDEWGERMAEL 271

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A +   RV + G +G     +      N  Q + + ++G+  +F  PLPG F V NA +A
Sbjct: 272 A-SHPLRVGTHGQEGLDCSARLTAVRDNGAQDIELRIDGQTHEFTLPLPGAFNVANAALA 330

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L   +G D    +  LE    VPGR E +    +     VDYAH   ++  +L+ +R 
Sbjct: 331 TALARVVGADMPQFVRGLEN-AAVPGRMERIDA-GQDFVAVVDYAHKPAAIAAVLETLRE 388

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              GRI +  G GGDRD  KR +MG+ A   AD+ IVTDDNPR+EDP  IRA ++ G   
Sbjct: 389 QVDGRIGIAVGAGGDRDTTKRAVMGQQAATRADLVIVTDDNPRTEDPAAIRAAVLRGARE 448

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                   E G R EAI   +      D +VV GKGHE   IV +       D + +R  
Sbjct: 449 AGSGAEIRECGPRAEAIDQLVAWALPGDAIVVVGKGHEVGQIVGD-TTHHFDDREEMRRA 507

Query: 493 LG 494
           L 
Sbjct: 508 LA 509


>gi|113869231|ref|YP_727720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
 gi|113528007|emb|CAJ94352.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
          Length = 520

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 155/491 (31%), Positives = 221/491 (45%), Gaps = 35/491 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++ D+R +  G +F A V GN     DG L+I QAIA GA AIV  +      F     
Sbjct: 31  QLTGDTRRLARGDVFFAYVLGNARLATDGRLYIAQAIAAGAGAIVYEADG----FDWPFS 86

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L V +  +     A+  +G     +    +TGT+GK+S + ++ ++ Q +G    
Sbjct: 87  DVVPHLAVSHLHQLAGPIAAGWHGNPVRGLAVTGITGTNGKTSCSQWLARVLQAAGTPCA 146

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T      Q    TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G   
Sbjct: 147 TIGTLGTGFPGALQATGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGLEQERVAGTHF 206

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL +DH+DYH +   Y  AK  LF         A++  DDA  + ++     A 
Sbjct: 207 SVAVLTNLTQDHLDYHGSMAEYEAAKESLFR--WDGLRTAVVNRDDAMGQRLLAADAAAI 264

Query: 265 C--RVLSVGYQ-----------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               V+  G             G+++    V A        I       +   P+ G F 
Sbjct: 265 GAPHVIEYGIDGPGAATVRRPRGEWLRATNVRATPTGTAFHIDGSFGSAEMATPMIGAFN 324

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSL 369
           V N L   G  +A G+     +  L  L  V GR E  G           VDYAHT ++L
Sbjct: 325 VSNLLAVLGAALANGVAWDAAIAALRALTPVEGRMELFGAAGGPDAPLAVVDYAHTPDAL 384

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L  +R +    +GR+  VFGCGGDRD  KRP+MG +A   AD  I+T DNPRSEDP+
Sbjct: 385 AQTLAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAEREADEVILTSDNPRSEDPQ 444

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I   I  G+       +  +R  AI  A+      DV++VAGKGHE    +  G K+  
Sbjct: 445 DILDAIADGMAVRARARQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEI-QGRKRPF 503

Query: 484 VDCDIIREILG 494
            D + +R  L 
Sbjct: 504 SDREHVRLALA 514


>gi|163815239|ref|ZP_02206616.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
 gi|158449434|gb|EDP26429.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
          Length = 540

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 144/519 (27%), Positives = 225/519 (43%), Gaps = 59/519 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSAT 85
           +  I ++  DSR +    +FV   G   +G  +I  AI++GA   I+    +  +D    
Sbjct: 20  DADICDIVDDSRQVSPNAVFVCRRGAVTNGRKYIGDAISRGAAGIIITDEVWDSEDVYDA 79

Query: 86  ---------IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
                       +  ++V+ + R  +    +  +G     +  + VTGT GK++V   ++
Sbjct: 80  DSMSGSLGYYPDDFFVVVMHDKRYSIGRLCNNFWGYPSRELTVIGVTGTKGKTTVTYMMK 139

Query: 135 QICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           ++ +  G  +  IG       S    +  TTP  + L + L  + S G     +E SS G
Sbjct: 140 KVLETCGCKTGLIGTIEVDDCSSQVQSVNTTPGVVQLHRILHNMVSNGARCCVMEVSSQG 199

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           +   R+ G+    G FTN+  DHI    H+T + Y   K  +F         A+I  DD 
Sbjct: 200 IMLGRVSGVDFDIGIFTNISPDHIGKNEHKTFEEYIRWKSTMFS----MCRYAVINMDDV 255

Query: 252 YSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHN---KQQVTISV--------- 295
           Y+  +       G +    V+  G       L    + H        ++ +         
Sbjct: 256 YAPCICNGIQVNGAKKCSGVIGYGMNIWSKELYDKISEHMPVYDIHFSLYIGDQLAMAYN 315

Query: 296 -------------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                        +G        +PG F VYNAL        +G   + V + LE +  V
Sbjct: 316 GITPGTECECVMPDGDRVPIHIDMPGLFNVYNALAVIAAGDVLGFPRSTVSKALEDIC-V 374

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E      RG  +Y+DYAH   SLE +LK +R+   G+I  VFGCGG+R + +R  M
Sbjct: 375 RGRMECAAV-YRGAYVYIDYAHNPVSLENVLKTLRSYFGGKIFCVFGCGGNRAKSRRIGM 433

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNK 458
           G ++  +AD+ IVT+DNPR EDPE I  +I  G+      +I   +R +AIR  I     
Sbjct: 434 GMVSGKMADLTIVTNDNPRFEDPEAIMDDIEDGLNAAGAEYIRIPDRKKAIRYGIVHAVA 493

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
            DV+++AGKGHET   V      M       RE++G IL
Sbjct: 494 GDVVLLAGKGHETYQDVMGHRTHMDE-----RELIGQIL 527


>gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 476

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 149/476 (31%), Positives = 224/476 (47%), Gaps = 25/476 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  V   ++ +Q G IF+   G K  G  F+ +A+A+GA AIV   + SL      I 
Sbjct: 8   TEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLP----IID 63

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P + V NT  FLS  +++L     E  +++A+TGT+GK++V+ FV Q+       + 
Sbjct: 64  KEIPFVWVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKAA 123

Query: 146 QIGPTSTISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG         +               L   L     +GV+HV +EASS GL QHRLD 
Sbjct: 124 VIGTIGFYLDGEKQQTSYEQLTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRLDH 183

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             +  G F NL  DH++ H   +AY  AK RL +         ++  DD + + V     
Sbjct: 184 CDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLAD----LSKKLVLNGDDNFCRSVGIYDK 239

Query: 262 NAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              C   S G+     +H++ V     K  + +     +     P  G++ V N + A  
Sbjct: 240 KKSC---SFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNTVAALM 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +GI    ++EH+  L +  GR E +  N  G  +YVDYAHT+ +L+ +L+      
Sbjct: 297 AVWRLGIPIDDIIEHMWSLKLPEGRLEKID-NPVGIDVYVDYAHTAEALQAVLQTFD--R 353

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
           S  I +VF CGG+RD+ KR  MG +A   AD+  +T DNPR EDP  I   II G     
Sbjct: 354 SKTIYLVFSCGGNRDKAKRFAMGAVASKYADVIYLTTDNPRDEDPIIINESIIAGFTEQQ 413

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +    +R  AI  A+    K D+++VAGKGHE    + N +K    D   I++  
Sbjct: 414 YYEIYLDRKVAIHQALAKAKKGDIVLVAGKGHEQTQQIKN-QKFPFSDQQCIKDYF 468


>gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 498

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 133/494 (26%), Positives = 222/494 (44%), Gaps = 22/494 (4%)

Query: 10  DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  ++I+ + +  +     + +N +S DSR +  G +FVAI G   DGH +I + I QGA
Sbjct: 2   NILDIIDNIKVKTIYGNLPESVNNISQDSRKVGEGDVFVAIKGYTVDGHNYIEKVIEQGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             ++ S       +      N  ++V+      K  S+ A ++      + +AVTGT+GK
Sbjct: 62  ALVIASR------YENYNVENCAVIVIKEHEIEKVASMIAKKINEGSNVHTVAVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           +S+++ V  + +  G SS  IG      +         TTP  + L   +  L    + +
Sbjct: 116 TSISTLVHNMLRTLGESSAYIGTNGFGKNDAEPVYFGNTTPDVVTLHNQIGELRRDNIKN 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241
           ++ EASSH +   R+  + +    FTNL  +H+D+H   Q Y   K  LF  L   L + 
Sbjct: 176 LAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEA 235

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGK 298
              ++  DD+Y K + K  +        V     F              K   T++    
Sbjct: 236 KYGVLNKDDSYYKVISKCLYQQEINYSIVDNTADFYAYNIKQYKEDKVYKTSFTLNSPEG 295

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            F+      G+F V N L A       G     ++  L KL  + GR E +G +     I
Sbjct: 296 TFECTTNYIGDFMVSNVLAALIAVWVKGYSVEQLVAILPKLGALYGRMEIIG-DDLPIDI 354

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             D+AHT +  E +L+  R +  G+  ++V G GG RD  K P++G I  + AD  ++T 
Sbjct: 355 ISDFAHTPDGYEKLLEATREMRKGKRTLLVTGMGGGRDISKGPLIGDIISE-ADYVVITT 413

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           D+PR ED E +   I  G+    + +   R +A++  IE+    DV+++A KG E   I+
Sbjct: 414 DSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSEPGDVVILASKGREDYEIL 473

Query: 476 TNGEKKMSVDCDII 489
             G+K    D  + 
Sbjct: 474 QGGKKVWHSDPIVA 487


>gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 488

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 146/479 (30%), Positives = 231/479 (48%), Gaps = 20/479 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + KI  + SDSR+++   IF  I G   DGH ++  A+ QGA+ IV S   +       
Sbjct: 12  NDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKNLN------Y 65

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                    V+NT   L+  ++  Y        I+ VTG+SGK+ VAS ++    +   S
Sbjct: 66  YHDKIIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKY-CS 124

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  IG  S   +   ++   TTP  +YL + L  ++  GV  V++EASSHGL   R+DGI
Sbjct: 125 SGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGI 184

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G +H+D+H T++ Y  AK +LFE + P    AI+ +DD     +     N
Sbjct: 185 NFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPT-GWAILNSDDLNFMTLKN---N 240

Query: 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              R+L+ G +    I  K +    +  +  IS +G  F    P+   F +YN L   G+
Sbjct: 241 TQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGV 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            IA+G D  +V++ +E +  + GR E + T  +   + +DY    ++ E I + +  +  
Sbjct: 301 LIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQ-FAVIIDYCQHISNYEAIFEYVDGVRQ 359

Query: 382 GR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           G   II V G  G R+   R  +G++A    D  I+T  + R ED  +I   I   I   
Sbjct: 360 GHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICKTIQKEIVDI 419

Query: 440 --IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             +   +R  AI  AIE+  K D++++ GKGHE    +  G+     D  I++E L  I
Sbjct: 420 NSVIIESRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQIVKEALERI 478


>gi|172040890|ref|YP_001800604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852194|emb|CAQ05170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 533

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 149/494 (30%), Positives = 243/494 (49%), Gaps = 37/494 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  ++  +  S  +Q G +F A+ G++  G  F   A   GA A++  +  +       
Sbjct: 35  QDVTVDSAAIGSADVQPGGLFCAVPGSRVHGATF---AADSGAAAVLTDAEGA----EIL 87

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
             ++ P+LVVD+ R+++   A+ +YG    ++  + +TGTSGK++    +++    +  S
Sbjct: 88  ADADLPLLVVDDVRRWMGPVAAAVYGHPSRDLRIIGITGTSGKTTTTYLIERALM-AKHS 146

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG T T I+      +LTTP    +   L+ +  +GVTHV +E SSH L   R+ GI
Sbjct: 147 VGIIGTTGTRINGEQIPTKLTTPEAPTMQALLAQMRDRGVTHVVMEVSSHALALGRVTGI 206

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---PAIIYADDAYSKEVMKR 259
                 FTNL +DH+D+H T + YF  K +LF +   + +    A++  DD + + +   
Sbjct: 207 DFDVAGFTNLSQDHLDFHPTMEDYFETKAQLFLQAQAEGAELPAAVVCVDDDWGQRLAGM 266

Query: 260 AHNAGCRVLSVG---YQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNA 315
             ++G + L+VG     G    +  V       Q++T++ EG++F +   L G F V N+
Sbjct: 267 IADSGLQALTVGTTKQSGADWQVTDVHVTPAGRQEITVATEGEEFSYDIGLVGSFNVANS 326

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A      +G D       +  +  VPGR + V    +     VDYAH   ++  +++ 
Sbjct: 327 LLAISCVTQLGEDPQAAAAAIADVQ-VPGRMQAVDA-GQPFLAVVDYAHKPGAVAAVVRT 384

Query: 376 IRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +       +GRI +V G GG+RD  KRP+MG+ A  +AD   VTDDNPR E+P  IR+ I
Sbjct: 385 LSDYLPSPTGRIGIVLGAGGNRDHDKRPMMGEEAAKVADAVFVTDDNPRDEEPAPIRSMI 444

Query: 433 IHGIPGFIE-------------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           + G+    E                R +AIR A+      D +VVAGKGHET   V  GE
Sbjct: 445 LDGVRKAAEAREANGEKVFYDDVPGRADAIRAAVAWARPGDAIVVAGKGHETGQEVR-GE 503

Query: 480 KKMSVDCDIIREIL 493
                D + +   L
Sbjct: 504 IHPFADLEELAAAL 517


>gi|90655385|gb|ABD96226.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured marine type-A
           Synechococcus GOM 3M9]
          Length = 511

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 150/507 (29%), Positives = 237/507 (46%), Gaps = 35/507 (6%)

Query: 9   KDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----- 62
           +    L+ Q++   P    +  + +++ DSR +Q G +F+ + G + DG  F  Q     
Sbjct: 3   QTLHALLRQVAWQIPEGLPDPLLQQITCDSRAVQDGTLFLGLPGERVDGGRFWRQALEAG 62

Query: 63  ----AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
                I   A A++  +A+          +           + L   A+  + +    + 
Sbjct: 63  AAAAVIGPSAAAVLPPAAHEPVVVVGEPVA-----------RQLGELAAAFWEQPSSRLA 111

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
            + VTGT+GK++    ++ +    G  +   G         +     TT     L   L+
Sbjct: 112 LIGVTGTNGKTTTTHLIEHLATAIGTPTALFGTLVNRWPGHSITATHTTGFADRLQGQLA 171

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +S G    ++E SSH L Q R+ G +  A  FTNL +DH+DYH + QAYF AK  LF 
Sbjct: 172 AAASAGAQLGAMEVSSHALAQQRVAGCRFAAAVFTNLTQDHLDYHASMQAYFEAKAALFA 231

Query: 236 ELLPKESPAI--IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           + L +  PA   + +DD +  ++ +R  +   R  S+   G  + +  +       +  +
Sbjct: 232 DPLLQSGPARAVVNSDDPWGLQLAERLGDRCWRS-SLSEPGAELRMSDLEMTARGVRGRL 290

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +  F+ PL G F + N L A G+ +   +    +LE +E    VPGR E V    
Sbjct: 291 ITPLGEGPFVSPLLGRFNLMNLLQAVGVLVQCQLPLMPLLEAIEGFRGVPGRMERVLLPG 350

Query: 354 RGG----RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   + VDYAHT + LE  L   R  + GR+I VFGCGGDRD+GKRP M  IA  L
Sbjct: 351 ADAHALPTVLVDYAHTPDGLENALAASRPFSRGRLICVFGCGGDRDRGKRPQMASIAARL 410

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  +VT DNPR+EDP++I  +++ GIP   +   +G+R  AI  AI     +D+++VAG
Sbjct: 411 ADRVVVTSDNPRTEDPQRILEDVVAGIPDGTDSLVEGDRAAAIAAAIAAAAPEDLVLVAG 470

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE   I+   +K    D +     L
Sbjct: 471 KGHEDYQILGT-DKVHFDDREEAENAL 496


>gi|206561804|ref|YP_002232569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia J2315]
 gi|198037846|emb|CAR53790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Burkholderia cenocepacia J2315]
          Length = 512

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 225/474 (47%), Gaps = 27/474 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R +QAG +FVA   +  D   F+  A+A+GA A++          +  +     
Sbjct: 30  QLHADTRSLQAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPDGLTDAPAVPVA---- 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   +++LAV  TGT+GK+S   ++             IG 
Sbjct: 86  -LAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +         TTP    L ++L+ L + G   V++E SSH L Q R++G       
Sbjct: 145 LGTGMPGQLVPTGFTTPDAPQLQRSLAQLRAAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T  AY  AK +LF         A++  DDA  + ++++      R +
Sbjct: 205 FTNLTQDHLDYHGTFDAYEAAKAKLFA--WRGLRAAVLNRDDAAGRRLLEKLAGR-VRTI 261

Query: 269 SVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           + G          + +    V A        +     D D      G F V N L   G 
Sbjct: 262 AYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGS 321

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +A  +     L  +E+L  V GR + +G    +    + +DYAHT ++L+  L  +R I
Sbjct: 322 LLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALDKTLDALRPI 381

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  ++I G+
Sbjct: 382 AAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVIAGM 441

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                     +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 TAPERARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 494


>gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 494

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 211/458 (46%), Gaps = 21/458 (4%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR      IFVA  G   D H F    I QG + IVV+           ++     ++V 
Sbjct: 30  SRTASGESIFVASKGYTVDSHRFCQNVIDQGTKIIVVNRKQE-------VKGEVTQVIVP 82

Query: 97  NTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TI 153
           +T +  S+ A  L+    + +     TGT+GK+S+A+ +  I +    +S  +G     I
Sbjct: 83  DTLRVASILAHTLFDYPSQQLTTFGVTGTNGKTSIATMIHLIYRGLDKNSAYLGTNGFQI 142

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +        TTP  + L K +          +++E SSHGL   RL G++     F+NL 
Sbjct: 143 NEEKTKGANTTPETVLLTKKIKQAVDSKAEAMTMEVSSHGLALGRLRGVEFDVAVFSNLT 202

Query: 214 RDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +DH+D+H T +AY +AK  LF +L   L KE   ++  DD +SK +          +L+ 
Sbjct: 203 QDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSKYL---ETVTPYEILTY 259

Query: 271 GYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G   +     + +       Q   +     +    P  G+F + N + A     + GID 
Sbjct: 260 GIDNEAQFMAQNIKESLQGAQFDFATPFGTYHVSSPYVGKFNISNLMAAMIAVWSKGIDF 319

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             ++E ++ L  V GR E V   S    + +DYAHT++ +  ++  ++     ++I + G
Sbjct: 320 KDIVEVVKSLEPVEGRLE-VLDPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQKLIFLVG 378

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIE 447
             G+RD  K P MG +A   AD  I T DNP  +DP+ + AE+  G     +IE  +R E
Sbjct: 379 MAGERDLTKTPEMGAVACR-ADYVIFTPDNPADDDPKMLTAELAKGATHNNYIEFEDRAE 437

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            I+ AIE+ N  D +V+A KG E   I+    K    D
Sbjct: 438 GIKHAIEVANPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|160933543|ref|ZP_02080931.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
 gi|156867420|gb|EDO60792.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
          Length = 492

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 135/504 (26%), Positives = 233/504 (46%), Gaps = 35/504 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +  +   +L+  +    +Q  ++  +N+V  DSR ++ G +FV ++G+  D H +     
Sbjct: 1   MFPQKLKDLLEGVGYKCLQGDDQVLVNDVVYDSRRVRPGCVFVCLIGSAVDSHQYA---- 56

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT- 123
                  V + A ++        +   +++V++TRK ++  ++ L+G HP   L   G  
Sbjct: 57  ----AQAVEAGAAAVVASRQLELAKGTLVLVEDTRKAMAYMSAALFG-HPAAKLKTVGIT 111

Query: 124 --SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
              GK++ A  ++ I ++ G+ +  IG     I         TTP    + K L+ +  +
Sbjct: 112 GTKGKTTTACMIKTILEKGGIKTGVIGTLGVIIGDTTYPTNNTTPESYDVQKYLNQMVEE 171

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELL 238
           G     +EASS GL  HR DG+    G FTN   DHI    H   + Y   K  LF+   
Sbjct: 172 GCQCAVMEASSLGLKWHRTDGLVFDYGVFTNFSPDHIGENEHSCLEEYAACKGLLFQSC- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTIS 294
                 ++  DD   + ++K   +  C + + G+      LK     +            
Sbjct: 231 ---KLGLVNIDDPACETILK---DHTCELETFGFSNPQAQLKGSNEGLIYRPGYLGAHFD 284

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V G         +PG+F  YNA+ A  +C    +    +L+ L ++  V GR E V    
Sbjct: 285 VSGAMKLSVDVDIPGKFSAYNAIAAIAVCRHFPVSEQNILDGLNEVK-VKGRVEPVKVPG 343

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + +DYAH + S+E IL  +R     R++ +FG GG+R + +R  MG+++  LAD+ 
Sbjct: 344 N-YTLLIDYAHNAVSMENILTTLREYQPHRLVCMFGAGGNRAKSRRYEMGEVSGRLADLT 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           ++T+DN R E+   I  +I  G+       I   NR +AIR  IE   + D++V+AGKGH
Sbjct: 403 VITEDNSRFENVMDIIQDIQTGMAKTQGKSIVIPNRRDAIRYCIENAQEHDIVVLAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K+   + +I+ +IL
Sbjct: 463 EDYQEIK-GVKRHFDEREIVADIL 485


>gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 539

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 133/480 (27%), Positives = 216/480 (45%), Gaps = 20/480 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+  S   + GWIFVAI G  + G  F   AI  GA  I+       + F   +   
Sbjct: 58  VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLILTDEVGRREAFERRL--G 115

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++ V N R  + L    +Y      +  +AVTGT+GK++ +  ++         +   
Sbjct: 116 VPVVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLC 175

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T +   + +   TT     +A+ L+           +E S+H L  +R+DGI    
Sbjct: 176 GTVETSVGPVSFEAVRTTAEAPVVARFLAATDQYHCGAAVIELSAHALSLNRVDGIVFDV 235

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL  DH+DY+   + YF AK  LF     +     +  DD + + +   A      
Sbjct: 236 AAFTNLQHDHLDYYGDMETYFAAKALLFTPEHSRRGV--VCVDDEWGRRLADHATVPVTT 293

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           V ++ ++     ++ V    +  +   ++   +G       P+ G+  V N  VA    +
Sbjct: 294 VSALTHEAADWQVRNVTPDKSIGRTVFTLVSPDGSPHRVAMPILGDVNVQNTAVAIVSAV 353

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           ++G+     +  +E    +PGR E V  T      + VDYAHT  +LE  L++ R +T+G
Sbjct: 354 SLGVSLEDAISSVENAPQIPGRMEKVNPTPGAQPLVIVDYAHTPEALEWTLRSTRELTAG 413

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--- 439
           R+++VFG  GDRD  KR  +  IA   AD+  VTD+NPRSEDP+ IR  ++ GI      
Sbjct: 414 RVVIVFGTDGDRDASKREELAAIAAREADVLWVTDENPRSEDPQSIRDYLLRGIASARPD 473

Query: 440 -----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                     R +A+R AI      D +++ GKG E    +  G      D  +  E+L 
Sbjct: 474 MHDVHEVTTCRRDAVRQAILDARAADTVIITGKGAEWYQEI-QGIHHRYNDVPVAAEVLA 532


>gi|294812137|ref|ZP_06770780.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440707|ref|ZP_08215441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294324736|gb|EFG06379.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
          Length = 561

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 141/496 (28%), Positives = 229/496 (46%), Gaps = 22/496 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  +L +      E  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 62  LGELAARLGVSDPAADEVTVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAGLGAAA 121

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++   A +         +  P+LV +N R  +   A+ +YG   E +L   +TGTSGK++
Sbjct: 122 VLTDPAGA----DRAAATGLPVLVTENPRARMGELAAEVYGHPGEGLLQIGITGTSGKTT 177

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               ++   + +G ++  +G   T I      +  TTP    L    + +  +GV  V++
Sbjct: 178 TVYLMEGGLRAAGRATGLVGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAM 237

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF     +     + 
Sbjct: 238 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPARSRRGV--VN 295

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306
            DDAY + +   A        + G+       + V        +T+   G        PL
Sbjct: 296 LDDAYGRRLAAEATVPVTTFSAEGHPDADWRAEDVEVGPLGSTLTLVGPGGVRVSARAPL 355

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N + A       G+D     + +  +  VPGR E V    +     VDYAH +
Sbjct: 356 PGPFNVANTVAAVVALATAGVDPQTAADGVAAVPGVPGRLERVD-EGQPYLAVVDYAHKT 414

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++++ +L+++R +T GR+ +V GCGGDRD+ KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 415 DAVDSVLRSLRKVTEGRLHIVLGCGGDRDETKRGPMGAAAARLADTAVLTSDNPRSEDPL 474

Query: 427 KIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I A ++ G    +    R + +           A+      D +++AGKGHE    +  
Sbjct: 475 AILAAMLAGAAE-VPAHERGQVLVDADRAAAVAAAVARAEPGDTVLIAGKGHEQGQDIA- 532

Query: 478 GEKKMSVDCDIIREIL 493
           G  +   D  ++RE +
Sbjct: 533 GVVRPFDDRQVLREAI 548


>gi|32490960|ref|NP_871214.1| hypothetical protein WGLp211 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316006|sp|Q8D2Z1|MURE_WIGBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25166166|dbj|BAC24357.1| murE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 496

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 146/503 (29%), Positives = 244/503 (48%), Gaps = 21/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +K+ +L    FP +   +S       + K+N +  +S+ I    IF+A+ GN   G  FI
Sbjct: 2   IKIINLKKFLFPWISTDIS-------KIKLNSIKLNSKKIIKNDIFIALYGNCNHGKNFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  G+  I++ +   L+        N PI+   N    LS  + + Y       N++
Sbjct: 55  FEAIKNGSSIILIETKNILKHGIIYFIKNIPIIYFYNLNYSLSELSGKFYLHPSRYMNVI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++ F+ +     G     IG       +  + ++ TT S I   K L++ 
Sbjct: 115 GITGTNGKTTISHFIAKWLFLLGEKIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNFF 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + +  V +E SSHGL Q+R++ I   +  F+NL +DHIDYH+    Y  +K +LF +L
Sbjct: 175 LKKNINTVVMEVSSHGLHQNRVNNINFFSAIFSNLSQDHIDYHKNMMQYEQSKWKLFSKL 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTI 293
                  II  DD   K  +K+  N+           KF    +++K +   +   +++I
Sbjct: 235 NVY--KYIINYDDVIGKNWIKKIPNSIIVSTKKNSIKKFKNLKMYVKDIFFHYFGTKLSI 292

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S           + GEF + N L++    + +G +   +    E L +  GR +      
Sbjct: 293 SSSWGSCVINTKIFGEFNINNLLLSFVALLTLGYNFKSLANVAENLTMPNGRMKIFYVK- 351

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +  R+ VDYAHT ++LE +L  I+      I  +FGCGGDRD+ KR +MGKI    +   
Sbjct: 352 KIPRVIVDYAHTPDALEKVLSAIKLHFKKNIWSIFGCGGDRDKSKRRVMGKICDLYSINI 411

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+T+DNPRSE   KI  +I  GI          +R  AI+ AI+  N++D++++ GKGHE
Sbjct: 412 ILTNDNPRSESETKIFNDIKIGIKNLNKVNIIPSREHAIKFAIDNSNEKDIVLILGKGHE 471

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              +    +K    D  ++ +IL
Sbjct: 472 EHQVFK-YKKVFFSDQILVNKIL 493


>gi|293365809|ref|ZP_06612515.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307703321|ref|ZP_07640265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
 gi|291315742|gb|EFE56189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307623097|gb|EFO02090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
          Length = 481

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 137/500 (27%), Positives = 224/500 (44%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++ G +F A  G       ++  
Sbjct: 9   DILKKDSLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P++VV++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      +T+       +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      L
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K S A++   D     V+K              +  F   +    I N +  + S  G
Sbjct: 232 LMKNSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +    +
Sbjct: 342 KVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIHVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R +AI+ A+ + N++ D +++AGKG +   
Sbjct: 402 TADDPNYEDPMVIAEEISSYISHPVEKIADREQAIKAAMAITNQELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  I    L
Sbjct: 462 IVQGKKEDYPGDAAIAERYL 481


>gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 464

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 151/483 (31%), Positives = 240/483 (49%), Gaps = 32/483 (6%)

Query: 15  INQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           I+QL I  +Q   + +I  +  +++  Q G +F+A+ G   +G  +I QAI +G  AI+V
Sbjct: 3   ISQLLINIIQTEVDIEIKGLCLNTQSAQPGDLFIALQGESTNGTDYINQAIDKGCVAILV 62

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASF 132
                    S  I    P + V+N   +L   A+  Y    + +++ VTGT+GK+SV   
Sbjct: 63  D--------SKEIECAIPSIRVNNLPIYLQTLANTFYNNATKIDVIGVTGTNGKTSVTYL 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + Q+ ++ G+ +  IG    I+   Q    TTP  + L + L +   Q + +  +E SSH
Sbjct: 115 ISQLLEKLGVKNGLIGTLG-ITHNKQLYFNTTPDILTLYRVLHHYYQQDIHYAVIEISSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L Q+R+ G+ +    FTNL +DH+DYH T   Y   K RLF   L      I+  DD +
Sbjct: 174 ALAQNRIAGLNIKQAVFTNLTQDHLDYHHTLDEYKTTKQRLFT--LNCVKSVILNQDDHH 231

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K  +K +        S+     F  +K +     +Q   + ++   + F  P  GEF +
Sbjct: 232 YKHFLKVSKGKKQTSYSL---NDFNSIKII-----QQGFLVQLD--HYVFEIPFLGEFNL 281

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L       A+G     ++  + +L   PGR + +         ++DYAHT N+LE  
Sbjct: 282 LNILATLNSVEALGFKRNDIIPLIYQLSTPPGRMQQI----NHYHAWIDYAHTPNALENA 337

Query: 373 LKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +  ++       I +VFGCGG+RD+ KR  MG+IA  LAD  I+T+DNPRSE+P+ I  +
Sbjct: 338 ITTLQKHYPNFKIRIVFGCGGNRDRNKRSKMGRIASKLADSIILTNDNPRSENPQTIIND 397

Query: 432 IIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I++GI    E     +R  AI TA+  L K + L++ GKGHET   + N +     D  I
Sbjct: 398 ILNGIDDSFELDIIKDRQLAIETAMITLKKNECLIITGKGHETTQQLFN-KIIYLNDLQI 456

Query: 489 IRE 491
            + 
Sbjct: 457 AQN 459


>gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
 gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
          Length = 498

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 138/505 (27%), Positives = 227/505 (44%), Gaps = 28/505 (5%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  E+IN + I  +  +  + +N +S DSR I  G +FVAI G   DGH +I + I QGA
Sbjct: 2   NILEVINNIKIKTIYGKLPKSVNNISQDSRKIGEGDVFVAIKGYTVDGHNYIGKVIEQGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             ++ S       +      N  ++VV      K  S+ A  +      + +AVTGT+GK
Sbjct: 62  ALVIASR------YEDYNIENCAVIVVKEHEIEKIASMIAKAINHGPAVHTVAVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTH 184
           +S+++ V  + +    SS  IG      +  +      TTP  + L   +  L  + + +
Sbjct: 116 TSISTLVHNMLRNLDESSAFIGTNGFGKNDNEPVYFGNTTPDVVTLHNKIGELRRENIKN 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++ EASSH +   R+  + +    FTNL  +H+D+H   Q Y   K  LF  L    S A
Sbjct: 176 LAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNFSEA 235

Query: 245 I---IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEG 297
               +  DD Y   + K  ++      SV  +    +   +         K Q T++   
Sbjct: 236 KYGVLNKDDDYYGIMSKCLYHQEIN-YSVKDETADFYAYNIKQFKENGIYKTQFTLNSPE 294

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F+      G+F V N L A       G     ++  L  L  + GR E +G +     
Sbjct: 295 GTFECTTNYIGDFMVSNVLAAMIAVWVKGYSVEKLVSILPSLGALYGRMEILG-DGLPID 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVT 416
           I  D+AHT +  + +L+  R I  G+  ++    GG RD  K P++G+I  + AD  I+T
Sbjct: 354 IISDFAHTPDGYKKLLEATREIRKGKRTLLLTGMGGGRDISKGPLIGEIISE-ADYVIIT 412

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            D+PR ED E +   I  G+    + +   R +A++  IE+    DV+++A KG E   I
Sbjct: 413 TDSPRDEDVEVLMGAIEKGMTHKNYEKVWFRTDAVKRVIELAEPGDVVILASKGREDYEI 472

Query: 475 VTNGEKKMSVD----CDIIREILGL 495
           +  G+K    D     D  ++  G+
Sbjct: 473 LKGGKKVWHSDPIIAVDEAKKKFGI 497


>gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 481

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 137/500 (27%), Positives = 226/500 (45%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR ++ G +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSDVFFDNISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      +T+       +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      L
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K S A++   D     V+K              +  F   +    I N +  + S  G
Sbjct: 232 LMKNSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N++ D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  I    L
Sbjct: 462 IVQGKKEDYPGDAAIAERYL 481


>gi|15827429|ref|NP_301692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae TN]
 gi|221229906|ref|YP_002503322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae Br4923]
 gi|6093448|sp|O69557|MURE_MYCLE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3080478|emb|CAA18673.1| udp-n-acetylmuramoylalanyl-d-glutamate --2,6-diaminopimelate ligase
           [Mycobacterium leprae]
 gi|13092979|emb|CAC31290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae]
 gi|219933013|emb|CAR71004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 530

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 147/501 (29%), Positives = 223/501 (44%), Gaps = 26/501 (5%)

Query: 11  FPELINQLSIF-------PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            PEL+ Q+               +  +  V+  ++ + +G +F A+ G    G  +   A
Sbjct: 21  LPELVAQVGAVLADGPGQAATVPDIPVTGVTLRAQEVLSGDLFAALAGASTHGARYAGVA 80

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A++   A   +  +    S+ PIL+    R  L   A+  YG HP N + V G 
Sbjct: 81  LERGAVAVLTDVAGVAELTAQA--SSVPILIHPEPRSVLGGLAAAAYG-HPSNRMTVVGI 137

Query: 124 SGKSSVA---SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +G S        V+   +  G     +G     I      + LTTP    L   L+ +  
Sbjct: 138 TGTSGKTTTTYMVEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMVE 197

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELL 238
           +GV  V +E SSH L   R++G +     FTNL RDH+D+H   + YF AK  LF+   L
Sbjct: 198 RGVETVVMEVSSHALSLGRVEGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHSL 257

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEG 297
            +    ++  DD   +    RA +A   V ++G    +            Q+ T +   G
Sbjct: 258 LRARTVVVCIDDDAGRATAARAGDA-ITVSALGQPASWRATDIRSPGVGAQEFTAVDPAG 316

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG + V N LVA  +   +G+           +  +PGR E +    +   
Sbjct: 317 VQHRVGIRLPGRYNVANCLVALAILDVVGVSPEQASLGFRDIR-IPGRLERIDC-GQDFL 374

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   +L  +L  +      R+ VVFG GG+RD GKR  MG+IA +LAD+ +VTD
Sbjct: 375 ALVDYAHKPGALHSVLTALLQ-PDHRLAVVFGAGGERDPGKRAPMGEIAAELADLVVVTD 433

Query: 418 DNPRSEDPEKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR EDP  IR +I+       G    +E G+R  AI+ A+      DV++VAGKGHET
Sbjct: 434 DNPRGEDPAAIRRDILTGTVAAGGAAQVVEIGDRRAAIQYAVAWAGPDDVVLVAGKGHET 493

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
                          ++ R +
Sbjct: 494 GQRGAAETCPFDDRVELARAL 514


>gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
 gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
          Length = 767

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 136/518 (26%), Positives = 241/518 (46%), Gaps = 47/518 (9%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      + +I  +  DSR + AG +FV  VG++     F+ +A  +G
Sbjct: 243 LAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCVGSE----SFLSEADKRG 298

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A+V S    ++D          +++V++T   L+  AS  Y +HP   ++V G +G  
Sbjct: 299 AVAVVASKEIDIED----TLGCKALVIVEDTNAVLAALASSFY-RHPSKNMSVIGVTGTD 353

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQ 180
              +    I         + G  ST+S +          N  T P  + +   ++ +   
Sbjct: 354 GKTTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATTNPDAVLVQSLMAKMLHN 413

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
           G   + +EAS   L   + D +      FTNL R++ D+  T + Y +A+ +LF  ++ P
Sbjct: 414 GTEALVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFARMVDP 473

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEG 297
                ++  DD  +   +++  N    V++   +     +H         + QV ++   
Sbjct: 474 GRHRKVVNIDDPNATFFVQQG-NPNVPVVTFAMENTKADVHPLMFELSLFETQVLVNTPQ 532

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G 
Sbjct: 533 GILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG- 591

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VD+A+T + L  +L +IR +   RII V GC G+ ++GKRP+M KIA + +D+ ++T 
Sbjct: 592 VIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTS 651

Query: 418 DNPRSEDPEKIRAEIIHGI----PGFIEKGN------------------RIEAIRTAIEM 455
           DNPR+EDP  I  +++ GI      +++ G                   R  A+R A+ M
Sbjct: 652 DNPRNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAM 711

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 712 GEEGDMVVVAGKGHEAYQ-LEGEKKEFYDDREECREAL 748


>gi|116075053|ref|ZP_01472313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
 gi|116067250|gb|EAU73004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
          Length = 511

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 151/489 (30%), Positives = 223/489 (45%), Gaps = 17/489 (3%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       I  ++ DSR    G +F+ + G + DG  F  Q +A GA A V+ SA +L 
Sbjct: 16  VPEGCPNPAITALTCDSRCASNGSLFLGLPGERVDGGSFWRQTLADGAAAAVIGSAAALA 75

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D  +       +             A   Y      ++ VTGT+GK++    ++ IC + 
Sbjct: 76  DPPSPADPVVVVADPVADWAGALAAAFWQYPSRRMTLIGVTGTNGKTTTTHLIEHICDQI 135

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G S+   G         +  +  TT     L   L+   + G    ++E SSH LDQ R+
Sbjct: 136 GRSAALFGTLVNRWPGHSITSTHTTAFADRLQAQLAEAVAGGTQVAAMEVSSHALDQGRV 195

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL----PKESPAIIYADDAYSKE 255
            G +  A  FTNL +DH+DYH + QAYF AK RLF E L     + + A++  DD + ++
Sbjct: 196 AGCQFSAAVFTNLTQDHLDYHPSMQAYFEAKARLFAEPLLMAEGEGARAVVNVDDPWGQK 255

Query: 256 VMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           +  +      R      +   G  + +  +          I        F  PL G F +
Sbjct: 256 LADQLGERCWRCSLEPERHPGGVELTMTDLTMTSAGVSGEIVTPAGRGAFQSPLVGAFNL 315

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-----IYVDYAHTSN 367
            N L A G+ +  G+  ALVL+       VPGR E V   S         + VDYAHT +
Sbjct: 316 MNLLEAVGVLVQQGMPLALVLQAAACFKGVPGRMERVMLGSDQAMADLPSVLVDYAHTPD 375

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L   L   R    G ++ VFGCGGDRD+GKRP M  +A +L+D  +VT DNPR+EDP++
Sbjct: 376 GLRNALLASRPFVKGDLVCVFGCGGDRDRGKRPQMAAVAAELSDRVVVTSDNPRTEDPQQ 435

Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +++ GIP     +   +R  AI   I      D++++AGKGHE   I+    K    
Sbjct: 436 ILDDVVAGIPAEASLVVDVDRASAIADVIAEAGADDLVLIAGKGHEDYQILGT-TKIHFD 494

Query: 485 DCDIIREIL 493
           D +     L
Sbjct: 495 DREQAEIAL 503


>gi|322375576|ref|ZP_08050088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
 gi|321279284|gb|EFX56325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
          Length = 481

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 135/500 (27%), Positives = 226/500 (45%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++ G +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      +T+       +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      L
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + S A++   D     V+K              +  F   +    I N +  + S  G
Sbjct: 232 LMENSRAVVINSDMDHFSVLKEQVEHQ--------EHDFYGSQSSNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R +AI+ A+ + N++ D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIAEEISSYISHPVEKIVDREQAIKAAMAITNQELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  +    L
Sbjct: 462 IVNGVKESYPGDAAVAERYL 481


>gi|330836875|ref|YP_004411516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
 gi|329748778|gb|AEC02134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
          Length = 535

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 152/530 (28%), Positives = 238/530 (44%), Gaps = 46/530 (8%)

Query: 2   KLQDLIYKDFPELINQL----SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           +L +L+  +F  L + L       P    + +I  +  DSR    G I+ A  G  EDG 
Sbjct: 6   RLSELL--EFSSLAHTLVFLKDGRPFPLPDIEITSIRHDSRVCDQGSIYCAFRGLHEDGI 63

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
            F+  A+ +GA A+V           +      P +VV+  R+  +L     +G      
Sbjct: 64  DFMDNALEKGAAAVVTDR------LPSRPHEGVPYIVVEAPRQAYALLCGSFFGNPASAL 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAK 172
            ++ VTGT GKS+   ++ Q+ +  G+ +  +   S        +   R +TP    L  
Sbjct: 118 KVIGVTGTDGKSTTIEYLWQLLRGQGVRAGLLSTVSWDDGSGLVSSPYRQSTPEAWELHS 177

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            LS     G++ V +E +SH L     RL GI      +T +  +H+++H + + Y +AK
Sbjct: 178 FLSSCRDHGLSIVILETTSHALSMEYDRLAGIAFSGAIYTTMTSEHLEFHGSLERYVDAK 237

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + L   LLP  SP +I  D+A   ++MK A  A   + +V +       +K   I N   
Sbjct: 238 LNLARRLLP-GSPLVIPHDNARKDDIMKAAPQAKPFITAVHHGKSSGCSRKEDGILNGTC 296

Query: 291 --------------VTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAI-GIDSALVL 333
                          T ++  K+   L+  P    F + NAL AA +  ++  I    ++
Sbjct: 297 ISATVLGMEPEQLAFTFAINDKELTTLWRFPSPFPFLLSNALEAAAMAHSLIDIPLEAII 356

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE-MILKNIRTITSGRIIVVFGCGG 392
              EKL  V GR   V  NS G  + +D+AHT+++   ++ +  R      I VVFG  G
Sbjct: 357 AQFEKLSPVRGRAIPVP-NSLGVTVLIDFAHTADAFAHVMEEISRVHPKADITVVFGAAG 415

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNR 445
           +RD  KR  MG  A       I+TD++PR+E  E IR +I  GIP         +   +R
Sbjct: 416 ERDTTKRAPMGAQAARWCSRIIITDEDPRNEGYEAIRKDIEAGIPDALKRRRTILRIADR 475

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
             AIR A+  LN+ DVL++ GKGHET     NG K    +    RE L +
Sbjct: 476 KRAIREAVANLNRGDVLLLLGKGHETTIEYENGRKIPWDEMREAREALAV 525


>gi|238026127|ref|YP_002910358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
 gi|237875321|gb|ACR27654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
          Length = 515

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 141/475 (29%), Positives = 215/475 (45%), Gaps = 26/475 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +F+A   +  D    +  A+++GA A++V                  
Sbjct: 30  QLHADTRSLRAGDVFLAYAVDGADNRPHLANALSRGAAAVLVQPEGYA---GIDALDPAV 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V          AS  YG   +   ++ VTGT+GK+S   ++             IG 
Sbjct: 87  ALAVPGLDALAGEIASGWYGDPSDAMFVIGVTGTNGKTSCTQWIATALTALRRPCAVIGT 146

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 147 LGSGMPGRLVATGFTTPDAPQLQRSLAQLRDDGAQAVAMEVSSHALHQGRVNGTAFDVAV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         AII  DDA    ++        R +
Sbjct: 207 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRHAIINRDDAAGGRLLATLAGR-VRTV 263

Query: 269 SVGYQGKFIH--------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G   +             +V A        ++    D D      G F V N L    
Sbjct: 264 AYGIGARADAPEADRTLIASEVRATATGTAFRLTSSWGDADLEVGTLGLFNVSNLLAVLA 323

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +     L  + +L  V GR + +G   +     + VDYAHT ++LE  L+ +R 
Sbjct: 324 TLLVADLPFDAALAEMRRLESVNGRMQRLGGRIDHDEPLVVVDYAHTPDALEKTLEALRP 383

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE P  I  +I  G
Sbjct: 384 IAEARGGALVCMFGCGGDRDTTKRPLMGAIAERLADRVVVTSDNPRSEAPLAIIEQIASG 443

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +    G +   +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D
Sbjct: 444 MHAPDGALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRQFSDQD 497


>gi|19553363|ref|NP_601365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62391002|ref|YP_226404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|145296125|ref|YP_001138946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum R]
 gi|41326341|emb|CAF20503.1| PROBABLE UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2 [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846045|dbj|BAF55044.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 521

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 158/506 (31%), Positives = 234/506 (46%), Gaps = 28/506 (5%)

Query: 10  DFPELINQL------SIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQ 62
           D  +LI+ +       +      E+ I  +  DS  +  +  IF A+ G +  G  F   
Sbjct: 7   DLTKLIDGILKGSAQGVPAHAVGEQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGT 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
             A  A AI+  +A       A      P++VVD+ R  L   +S +YG   ++  ++ V
Sbjct: 67  DNAAKAVAILTDAAGLEVLNEAG--ETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIGV 124

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++ +  +++    +G     IG T T I       +LTTP    L    + +  
Sbjct: 125 TGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRD 184

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTHV +E SSH L   R+ G      +FTNL +DH+D+H T   YF+AK   F    P
Sbjct: 185 HGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSP 244

Query: 240 -KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-G 297
                 ++  DD++ + +   A +    V ++G +  F       +    Q   I+    
Sbjct: 245 LVADKQVVCVDDSWGQRMASVAADVQT-VSTLGQEADFSATDINVSDSGAQSFKINAPSN 303

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + +     LPG F V NA +A      +G+D       + K+  VPGR E +    +   
Sbjct: 304 QSYQVELALPGAFNVANATLAFAAAARVGVDGEAFARGMSKV-AVPGRMERID-EGQDFL 361

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   ++  +L  +RT   GR+ VV G GGDRD  KR  MG+++   AD+ IVTD
Sbjct: 362 AVVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTD 421

Query: 418 DNPRSEDPEKIRAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           DNPRSE P  IRA +  G              +E G+R EAIR  +E     D +VVAGK
Sbjct: 422 DNPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGK 481

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE   +V  G      D + +R  L
Sbjct: 482 GHEVGQLVA-GVTHHFDDREEVRAAL 506


>gi|30316061|sp|Q8NNN0|MURE_CORGL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21324933|dbj|BAB99556.1| UDP-N-acetylmuramyl tripeptide synthase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 517

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 158/506 (31%), Positives = 234/506 (46%), Gaps = 28/506 (5%)

Query: 10  DFPELINQL------SIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQ 62
           D  +LI+ +       +      E+ I  +  DS  +  +  IF A+ G +  G  F   
Sbjct: 3   DLTKLIDGILKGSAQGVPAHAVGEQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGT 62

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
             A  A AI+  +A       A      P++VVD+ R  L   +S +YG   ++  ++ V
Sbjct: 63  DNAAKAVAILTDAAGLEVLNEAG--ETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIGV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++ +  +++    +G     IG T T I       +LTTP    L    + +  
Sbjct: 121 TGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRD 180

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTHV +E SSH L   R+ G      +FTNL +DH+D+H T   YF+AK   F    P
Sbjct: 181 HGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSP 240

Query: 240 -KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-G 297
                 ++  DD++ + +   A +    V ++G +  F       +    Q   I+    
Sbjct: 241 LVADKQVVCVDDSWGQRMASVAADVQT-VSTLGQEADFSATDINVSDSGAQSFKINAPSN 299

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + +     LPG F V NA +A      +G+D       + K+  VPGR E +    +   
Sbjct: 300 QSYQVELALPGAFNVANATLAFAAAARVGVDGEAFARGMSKV-AVPGRMERID-EGQDFL 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   ++  +L  +RT   GR+ VV G GGDRD  KR  MG+++   AD+ IVTD
Sbjct: 358 AVVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTD 417

Query: 418 DNPRSEDPEKIRAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           DNPRSE P  IRA +  G              +E G+R EAIR  +E     D +VVAGK
Sbjct: 418 DNPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGK 477

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE   +V  G      D + +R  L
Sbjct: 478 GHEVGQLVA-GVTHHFDDREEVRAAL 502


>gi|330815438|ref|YP_004359143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
 gi|327367831|gb|AEA59187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
          Length = 514

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 143/471 (30%), Positives = 216/471 (45%), Gaps = 27/471 (5%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +QAG +F+A   +  D    I  A+A+GA A++V       D   +  ++     V
Sbjct: 34  DSRAVQAGDVFLAYAVDGVDNRSHIAGALARGAAAVLVQPDGFAIDALDSAVTHA----V 89

Query: 96  DNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
            +        AS  YG   + + AV  TGT+GK+S   ++             IG   + 
Sbjct: 90  PDLGALAGEIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIATALSALRTPCAVIGTLGSG 149

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +         TTP    L ++L+ L  +G   V++E SSH L Q R++G       FTNL
Sbjct: 150 MPGRLVATGFTTPDAPQLQRSLAQLRDEGAKAVAMEVSSHALQQGRVNGTAFDVAVFTNL 209

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            +DH+DYH+T +AY  AK +LF         A++  DDA    ++        R ++ G 
Sbjct: 210 TQDHLDYHRTFEAYEAAKAKLFA--WRGLRHAVVNRDDAAGARLLATLAGR-VRTVAYGI 266

Query: 273 QGKFIH--------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +             +V A        +       +      G F V N L   G  + 
Sbjct: 267 DERANAPEADRQLIAHEVRATATGTAFRLESSWGSAEVEVGTLGLFNVSNLLAVLGTLLV 326

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
             +     L  L +L  V GR + +G    +    + VDYAHT ++LE  L+ +R I   
Sbjct: 327 ADVPFEAALAELRRLESVNGRMQRLGGRVANDEPLVVVDYAHTPDALEKTLEALRPIAEA 386

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE P  I  +I+ G+   
Sbjct: 387 RGGALVCMFGCGGDRDATKRPLMGGIAERLADRVVVTSDNPRSEPPLAILEQIVAGMKTP 446

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
              +   +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D
Sbjct: 447 GAALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKREFSDQD 496


>gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 493

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 148/490 (30%), Positives = 229/490 (46%), Gaps = 21/490 (4%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ELI             +I  V  D+  I  G  F+A  GN   G  +I  A+ +GA AIV
Sbjct: 5   ELIKDWPCTMKGSIRVEIKRVEDDANLILPGDAFIARKGNNSSGISYIDSALEKGAAAIV 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
           V       +         PI+ V N   F++  ++++Y    E   ++AVTGT+GK++V 
Sbjct: 65  VDDENYFNEADLP----VPIIWVPNCLSFIAYASAKIYNFPAEALTVIAVTGTNGKTTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ----GVTHVS 186
            F+ QI  +    +  IG         +            AK + +L  +     V +V 
Sbjct: 121 HFIGQILNQLDKRAMVIGTNGVFIDREKCYPEMEALTTLQAKNIQFLFKEAIRLDVPYVV 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASS GL++HRLD   +  G F N+  DHI+ H + + Y  +K ++   L  K    II
Sbjct: 181 LEASSIGLEKHRLDHCDIDIGIFLNVTEDHIEDHGSFERYKLSK-QILSTLAKKN---II 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            +DD+  + +   A          G    +   + +          I  + +      PL
Sbjct: 237 NSDDSVCRSI-GLATKGKRIFFGKGSHVDYF-FQTLVDGPASTTCCIQHKKEKHIVNIPL 294

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G++Q  N L A      +    + +   +  L +  GRFE V  N  G  I VDYAHT 
Sbjct: 295 VGDYQCSNVLAAISCIAQLDFPLSDICNTIGNLVLPEGRFEHV-ENQLGLSIVVDYAHTP 353

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++++MIL+ ++  T  R+IV+F CGG+RD+ KRP MG IA   AD  I+T DN R+E+P+
Sbjct: 354 DAMKMILQTLKKHTKRRLIVMFSCGGNRDKAKRPKMGMIASIYADYIILTTDNARNENPQ 413

Query: 427 KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +I  +I  G      +IE  NR EAI  A+    K D +V+ GKGHE    + + +K   
Sbjct: 414 QINKQIREGFSSTQEYIECLNRKEAIEHALNYAEKGDTIVLLGKGHEKTQQIGDKQK-YF 472

Query: 484 VDCDIIREIL 493
            D   +RE++
Sbjct: 473 SDLVFVREMI 482


>gi|87122632|ref|ZP_01078509.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
 gi|86162090|gb|EAQ63378.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
          Length = 499

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 147/477 (30%), Positives = 240/477 (50%), Gaps = 20/477 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   +++DSR++    +F A+ G   +G  ++    AQG            +        
Sbjct: 29  EFEYLATDSRNLSKSTLFFALPGVSSNGWDYLASIAAQGCR-----VVVVPEVVKLDETL 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V +T   ++ F ++    +P +I AVTGT+GKSS++ +  QI +   LSS  +G
Sbjct: 84  DLAVIRVPDTLMSMTAFITKFALPYPSSICAVTGTNGKSSISYYSAQIAKAINLSSAIVG 143

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +    + +  TTP  + +       +SQGV H++ EASSH LDQ R++G+ +   
Sbjct: 144 TFGVGLLDDLKPSEQTTPDLLSMHTLAITFASQGVEHMTFEASSHALDQGRIEGLPIETA 203

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            ++NL RDH+DYH +  AY  AK +LF    P+   A+I  DD YS  ++  A       
Sbjct: 204 IYSNLSRDHLDYHGSMAAYAEAKAKLFR--FPQLKRAVICIDDEYSDIMLDAA-ACPVYS 260

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+ ++        +  + ++ +  + V GK +    PL GEF V NA+ A         
Sbjct: 261 YSLQHENADFFASNLNYLTDRVEFDLKVLGKSYSVSLPLLGEFNVANAIAALAAHWDQVE 320

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D A ++  L  L   PGR + V   S    + +DYAHT +++E+ LK +R    GR+  +
Sbjct: 321 DKAQLISALSLLSGAPGRMQMVNLQS-APLVVIDYAHTPSAIEVALKALRLHNKGRLTCI 379

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE---IIHGIPGFIEKG- 443
           +GCGGDRD+GKRP+M + AL  +DIA +T DNPR+E   +I  +   ++      +E+G 
Sbjct: 380 YGCGGDRDRGKRPLMTEAALAYSDIACLTSDNPRTESVAQILDDALIMLENKDALVEQGS 439

Query: 444 -----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                +R  AI   I      DV+++AGKGHE    + +G K    D ++  E L L
Sbjct: 440 LHILPDRRAAIFDVIAKAQSDDVILIAGKGHENYQDI-DGVKHHFDDAEVALEALTL 495


>gi|78065116|ref|YP_367885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
 gi|77965861|gb|ABB07241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
          Length = 512

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 145/474 (30%), Positives = 221/474 (46%), Gaps = 27/474 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++          +  +     
Sbjct: 30  QLHADTRSLKAGDVFVAYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVALAV- 88

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                   +     AS  YG   +++LA+  TGT+GK+S   ++             IG 
Sbjct: 89  ----PALDQLAGEIASSWYGDPSDSLLAIGVTGTNGKTSCTQWIAAALTALHQPCAVIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGMPGQLVPTGFTTPDASQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T  AY  AK +LF         A+I  DDA  + ++++      R +
Sbjct: 205 FTNLTQDHLDYHGTFDAYEAAKAKLFA--WRGLRAAVINRDDAAGQRLLEKLAGR-VRTI 261

Query: 269 SVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           + G          + +    V A        +     D D      G F V N L   G 
Sbjct: 262 AYGIGDASAPDADRELVALDVRATTTGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGS 321

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +A  +     L  + +L  V GR + +G    +    + +DYAHT ++LE  L  +R I
Sbjct: 322 LLAADVPFDAALAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPI 381

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ +FGCGGDRD  KRP+MG IA   AD  +VT DNPRSEDP++I  +I+ G+
Sbjct: 382 ATARGGRLVCMFGCGGDRDATKRPLMGAIAERFADETVVTSDNPRSEDPQRIIDQIVAGM 441

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                     +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 TAPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 494


>gi|320535821|ref|ZP_08035902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
 gi|320147369|gb|EFW38904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
          Length = 564

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 144/511 (28%), Positives = 222/511 (43%), Gaps = 46/511 (9%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +  ++  + +++ +  DSR +QAG +F A  G   DG  +I  AI  GA AIV  +    
Sbjct: 54  VIDVRGTDTEVSSIEYDSRKVQAGAVFFAFPGLHTDGEQYIADAIHTGAIAIVHQNELP- 112

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                +  +    + V   R  +S F +  Y    +++  + VTGT GKSS  SF+ Q+ 
Sbjct: 113 -----SYAAGVCYVRVREVRAVMSAFVAYFYDFPSKDLVVIGVTGTEGKSSTVSFIAQLL 167

Query: 138 QRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +   +      S              TTP  + + + L+ +   G     VE+SSHGL
Sbjct: 168 RLAHKRAGFFSTVSYSLGDEVIPNPEHQTTPESVTVQQRLAAMRDNGCEFAVVESSSHGL 227

Query: 195 D--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE---------SP 243
                RL+ +   AG F N+ ++H+++H T + Y   K  LF +L             S 
Sbjct: 228 SPLTARLNDVCFDAGIFMNVTQEHLEFHGTFEQYRFDKANLFRKLDEHAHIKAGRSVPSF 287

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF- 302
            ++ ADD  S E    A    C   SV    K   LK          +     G  FD  
Sbjct: 288 GVVNADDP-SAEYFYAATKQPCYSFSVNTAKKTAFLKNELQGVIAVNIKEDSNGIQFDIF 346

Query: 303 ----------LFPLPGEFQVYNALVAAG-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       PL G F V N   +   +   +    A ++  L+KL  + GR   +  
Sbjct: 347 ESGKSESIHARAPLAGLFNVQNLCASLLTVSSILQKPLAELIPLLQKLEPITGRMCKIQ- 405

Query: 352 NSRGGRIYVDYAHTSNSLEMIL---KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +   + +DYAHT +S +M++   K+      G++IVVFG GG+RD  KRP  G+IA  
Sbjct: 406 EGQPFEVLIDYAHTPSSFQMLMPPIKDRIAKQGGKLIVVFGSGGERDTKKRPEQGRIAAA 465

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVL 462
             D+ I+ D++PR EDP  +   I  G P            +R  AIR A  + N  D +
Sbjct: 466 YCDVIILADEDPRGEDPVALLEMIAAGAPHKKLDSELFIIPDRKAAIRKAFSLANPHDAV 525

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++ GKGHE   I  NG    S + +I R +L
Sbjct: 526 LLLGKGHENTIIYKNGAIPYS-EEEIARTLL 555


>gi|302533956|ref|ZP_07286298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
 gi|302442851|gb|EFL14667.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
          Length = 564

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 143/478 (29%), Positives = 226/478 (47%), Gaps = 22/478 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++ DSR ++ G ++ A+ G +  G  F  QA A GA A++     + +       +
Sbjct: 82  QITGITHDSRAVRPGDLYAALPGARLHGADFAAQAAALGAAAVLTDPEGAER----AAAT 137

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+L V + R  +   A+ +YG+  E +L   +TGTSGK++ A  V+   + +G ++  
Sbjct: 138 GLPVLAVADPRARMGELAAEIYGRPGEALLQLGITGTSGKTTTAYLVEGGLRAAGRTTGL 197

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     I      +  TTP    L    + +  +GV  V++E SSH L   R+DG    
Sbjct: 198 VGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCVFD 257

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              F NL  +H+++H   + YF AK +LF E   +     +  DD Y + + K A     
Sbjct: 258 VAVFNNLSPEHMEFHTGMEDYFQAKAQLFTERRARLGV--VNLDDEYGRRLAKEASIPVV 315

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              + G        + V + H    +T+   EG+      PLPG F V N + A     A
Sbjct: 316 TFSAAGDPAADWRAEDVVSGHMDSTLTLVGPEGQRVRAKAPLPGPFNVANTVAAIVTLAA 375

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+D     + +  +  VPGR E V    +     VDYAH ++++E +L+ +R +T+G++
Sbjct: 376 AGLDPQTAADGVAAVPGVPGRLERVDA-GQPYLAVVDYAHKTDAVESVLRALREVTTGKL 434

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            +V GCGGDRD  KR  MG  A   AD A++T DNPRSEDP KI A +  G    +    
Sbjct: 435 HIVLGCGGDRDTTKRAPMGAAAARYADTAVLTSDNPRSEDPLKILAAMFEGAVS-VPAEE 493

Query: 445 RIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R   +           A+      D ++VAGKGHE     T G  +   D  ++R  +
Sbjct: 494 RGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHEQGQD-TAGVVRPFDDRAVLRAAI 550


>gi|296537028|ref|ZP_06899021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296262644|gb|EFH09276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 425

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 164/411 (39%), Positives = 235/411 (57%), Gaps = 7/411 (1%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L   + R+ L+  A+  +G+ P   +AVTGT+GK+S   F++QI   +G  +  +G  
Sbjct: 14  PLLTDPDPRRALARMAAAFHGQQPAIAVAVTGTNGKTSTVDFLRQIWTLAGDRAASLGTL 73

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +  F +   LTTP P+ L + L+ L+  GV  V++EASSHGL+Q RLDG++L A  F
Sbjct: 74  GLRAPGFPETPSLTTPDPVLLHETLAGLARAGVQKVALEASSHGLEQRRLDGLRLTAAGF 133

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMKRAHNAGCRV 267
           +NL RDH+DYH    AY  AK+RLF+ LL +   A+  AD A    + +   A     R+
Sbjct: 134 SNLTRDHLDYHGGMAAYAAAKLRLFDTLLDQGDGAVANADMAPEMLEALRAVARRRHLRL 193

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +VG  G+ I L +     + Q + +++ G+  + L  LPG FQ  N ++AAGL ++ G+
Sbjct: 194 ATVGEAGEAIRLLRHTPRPDGQALELTLYGRRAELLLALPGRFQADNVMLAAGLAVSAGM 253

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +  V   L +L  V GR E       G  +YVDYAHT ++LE +L  +R    GR+ VV
Sbjct: 254 PADKVAGLLPRLTGVRGRMELAARLPNGAAVYVDYAHTPDALERLLTALRPHAEGRLHVV 313

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FG GGDRD GKRP+MG++   LAD AI+TDDNPR EDP  IRA +  G+ G     E G+
Sbjct: 314 FGAGGDRDGGKRPLMGEVCARLADHAILTDDNPRGEDPAAIRAAVRAGMAGGAAITEIGD 373

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           R  AI   +  L   DVL VAGKGHE    +  G      D + +R + G+
Sbjct: 374 RAAAIEAGLAALGPGDVLAVAGKGHEPGQTI-QGVTHPFDDAETVRRLAGV 423


>gi|300788102|ref|YP_003768393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
 gi|299797616|gb|ADJ47991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
          Length = 514

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 164/503 (32%), Positives = 247/503 (49%), Gaps = 26/503 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+ +    LI           E  +   +  ++H+  G +F A+ G +  G  F  Q
Sbjct: 18  LATLLARADARLIAG----SPDAAELTVTGTTLRAQHVLPGDLFAALPGARAHGADFSDQ 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+A GA A++  +A +  +  A   +  PILV  + R  L   A+ +YG+    +  L V
Sbjct: 74  AVAAGAVAVLTDAAGA--ERPALRDAGVPILVHPDPRAALGEIAAWIYGEPSLELSVLGV 131

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++ +  V    Q +GL++  IG   T I+     +  TTP    L   L+ +  
Sbjct: 132 TGTSGKTTTSYLVDAGLQAAGLTTGLIGTVETRIAGDRLVSGFTTPEAPDLQALLAVMLE 191

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV +E SSH L   R++G +   G+FTNL +DH+D+H+  Q YF AK  LF+    
Sbjct: 192 RGVTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMQEYFAAKSLLFDG--- 248

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGK 298
           + +  ++  D A+ + ++             G +  +           +Q  T+   +G 
Sbjct: 249 RSTHEVVVVDSAWGQALL--TPQTITVTTDPGTEAAWKATDLEATPQGEQTFTLHGPDGA 306

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PLPGEF V NA++AA +    G+    ++  L ++  VPGR E V    +    
Sbjct: 307 RAAARIPLPGEFNVANAVLAAAILSTAGVSLEHIVAGLAQVQ-VPGRMERVHV-GQEFTA 364

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH   ++   L  +R  T GRII V GCGGDRD  KRPIMG+ A   +D+ IVTDD
Sbjct: 365 VVDYAHKPAAVAQGLDALRARTEGRIITVLGCGGDRDTAKRPIMGEAAARRSDVLIVTDD 424

Query: 419 NPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSEDP  IRA ++ G            +E G+R EAI  A+ +    D++ +AGKGHE
Sbjct: 425 NPRSEDPAAIRAAMLAGARSVGPAEGGEILEIGDRREAIAHAVSLAGPGDIVFLAGKGHE 484

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           +      G      D D +   +
Sbjct: 485 SGQE-AGGVVHPFSDRDELAAAI 506


>gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
 gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
          Length = 428

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 138/424 (32%), Positives = 216/424 (50%), Gaps = 10/424 (2%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+     E+   +S   +   +  ++ +  DSR IQ G  FVAI+G+  DG LFI +
Sbjct: 7   LAKLLKPWISEMAGSVSY--LSLDDIVVSNLELDSRAIQQGDSFVAIIGHTVDGRLFIER 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA +++  +    +    T     PI+ +      LS+ A+RLY ++ + ++ VTG
Sbjct: 65  AVQAGATSVLAQADSEHKHGEVTYIGEVPIIHLYQLDTLLSVIAARLY-QYQQQVIGVTG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   + Q     G  +  +G T        ++ + TT S I + + L+ L  QG
Sbjct: 124 TNGKTTITQLIAQWIGLLGDKAAIMGTTGNGFLDQLEEAKNTTGSAIDVQRILAKLDQQG 183

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + ++E SSHGL Q R+  +    G FTNL RDH+DYH T + Y  AK  LF       
Sbjct: 184 AHYTAMEVSSHGLVQGRVAAVPFKLGIFTNLSRDHLDYHGTMEGYEAAKKLLFTG--HHC 241

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KD 299
             A++  DD   +  +    +A    +  G Q     L      ++   +++  +G    
Sbjct: 242 EHAVLNIDDVVGRRWLSERSDAIAVSV-EGRQEGERGLWATTVKYSDSGISLEFDGYFGQ 300

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PL G+F   N ++A    +A+G D   + +   KL  V GR E   T S+  +I 
Sbjct: 301 GNLQAPLIGQFNASNLMLAFASLLALGFDIEHLQQTAPKLQPVLGRMELFQTTSK-PKIV 359

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L  +R    G++ V+ GCGGDRD+GKRP+M  IA  LAD  I++DDN
Sbjct: 360 VDYAHTPDALEKALLALRVHCEGKLWVIVGCGGDRDKGKRPMMAAIAERLADHVILSDDN 419

Query: 420 PRSE 423
           PRSE
Sbjct: 420 PRSE 423


>gi|326572875|gb|EGE22860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis CO72]
          Length = 520

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 153/486 (31%), Positives = 243/486 (50%), Gaps = 31/486 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81
           + ++   DSR I A   FV +  + +D        + ++         A V+S       
Sbjct: 40  QFDQFCLDSRKIGADDGFVLLKSSSQDAQTSLNNANRYLMSVKDS--AAFVISELDLAGL 97

Query: 82  FSATIRSNTPILVVDNTRKFLS-LFASRLYGKHP---ENILAVTGTSGKSSVASFVQQIC 137
               I+   PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+C
Sbjct: 98  DLDDIQ--IPIISVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           Q SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ
Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKE 255
           +RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD  +  
Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPA-- 273

Query: 256 VMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            +     A  R++    Q      + K V    +  ++ +     +   + PL G F V 
Sbjct: 274 -LFDYEAADFRIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVD 332

Query: 314 NALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           N L +     A+    +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +
Sbjct: 333 NLLASMAAFTALNPARAADLPNLITQLQGARGRMQR--ASSQTGAFIIDYAHTPDALKQV 390

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L ++R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++
Sbjct: 391 LSSLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADM 450

Query: 433 IHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             G+        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  
Sbjct: 451 QKGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEI-QGVRYDFDDLA 509

Query: 488 IIREIL 493
           ++ E L
Sbjct: 510 VLGEFL 515


>gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 514

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 134/480 (27%), Positives = 222/480 (46%), Gaps = 28/480 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V+  S  +Q G ++V + G +  G  F   A A GA A++          +    S  
Sbjct: 40  TGVTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDPDG----LAEARDSGL 95

Query: 91  PILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++  + R  L   A+ ++   ++P  +  VTGT+GK+SV   +  + ++ G+ +   G
Sbjct: 96  PVILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVT---G 152

Query: 149 PTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            TST    I   +  +RLTTP    L   L+ +    V  V++E S+  L +HR+DG+  
Sbjct: 153 LTSTAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVF 212

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +F NL  DH+D +   + YF AK   F+    +     +  D  + + +++++    
Sbjct: 213 DVAAFINLSHDHLDDYADFEEYFEAKAAFFDPDRARRGVVSL--DTVWGQRIVEQSRIPM 270

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCI 323
             + +         +  +    +     +            P+PG F   NA +A  + +
Sbjct: 271 TTISAQPGIEADWRVTVLEQTPDSTGFRLEGPDNRVLVSSVPVPGWFMAANAGLAIVMLV 330

Query: 324 AIGIDSALVLEHLEKLHVVPG----RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             G D   V   L++   +      R E V +   G   +VDY HT ++ E  L+ +R  
Sbjct: 331 ESGYDLDAVAHVLDRDGGIQAYIPGRAERV-SGDTGPLFFVDYGHTPDAFEQTLQALRPF 389

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           T G++++VFG  GDRD  KR  MG IA  LAD+ ++TD +PR EDP  IRA +I G    
Sbjct: 390 TPGKLVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRASLIAGARAA 449

Query: 440 I------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +      E  +   AIRTA+ ++ + D ++VAG GHE  H V  G+K      D  R  L
Sbjct: 450 VPDREIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVA-GKKIPFSARDDARAAL 508


>gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
 gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
          Length = 504

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 136/506 (26%), Positives = 229/506 (45%), Gaps = 26/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK  D    +  ++I  + I  +      K+N +S DSR I  G +FVAI G   DGH +
Sbjct: 1   MKKVD--SMNILDIIENIKIKTIYGSLPTKVNNISQDSRKITKGDVFVAIKGYTVDGHNY 58

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENI 117
           I + IAQGA  ++ S     +D++     +  ++VV      K  S+ A ++   +  + 
Sbjct: 59  IEKVIAQGAALVIASR---YEDYNVQ---DCAVVVVKEHEIEKIASMLAKKINSGNKVHT 112

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN--RLTTPSPIYLAKALS 175
           +AVTGT+GK+S+++ V  + +  G SS  IG      +  +      TTP  + L   + 
Sbjct: 113 VAVTGTNGKTSISTLVHNMLRELGESSSYIGTNGFGKNDDEPIYLGNTTPDVVTLHNKIG 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  + + +++ EASSH +   R+  + +    FTNL  +H+D+H   Q Y   K  LF 
Sbjct: 173 ELHREDIKNLAFEASSHAMVLGRIYNVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFS 232

Query: 236 ELLPKESPAI---IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI----HNK 288
            L    S A    +  DD Y   + K  ++      SV  +    +   +         K
Sbjct: 233 TLGNNFSEAKYGVLNKDDEYYSIMSKCLYHQEIN-YSVLDEAADFYAYNIKQYSENGRYK 291

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+     +++      G+F V N L A       G     ++  L  L  + GR E 
Sbjct: 292 TTFTLKSPEGEYECQTNYIGDFMVSNVLAALIAVWLKGYSVEKLVNILPNLGALYGRMEI 351

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIAL 407
           +G       I  D+AHT +  + +L+  R I   +  ++    GG RD  K P++G+I  
Sbjct: 352 LG-EDLPIDIISDFAHTPDGYKKLLEATREIRKNKRTLLLTGMGGGRDISKGPLIGEIIS 410

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + AD  ++T D+PR ED E +   I  G+    + +   R +A++  I++    DV+++A
Sbjct: 411 E-ADYVVITTDSPRDEDVEVLMGTIEKGMTHKNYEKVWFRTDAVKRIIQLAEPGDVVILA 469

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE 491
            KG E   I+  G+K    D  +  E
Sbjct: 470 SKGREDYEILRGGKKVWHSDPVVAIE 495


>gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
 gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
          Length = 508

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 125/484 (25%), Positives = 218/484 (45%), Gaps = 27/484 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S            
Sbjct: 25  DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRDMDF------Y 78

Query: 87  RSNTPILVVDN--TRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             N   + VD+   RKF+S F++  Y +  + +  + VTGT GKSSV  ++  + ++ G+
Sbjct: 79  SPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGI 138

Query: 143 SSFQIGPTSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH- 197
               I                 R +TP    +   LS +    V +  +E++SHGLD   
Sbjct: 139 KVGFISTVFLDDGDGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGLDLET 198

Query: 198 -RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL  +   A  FTN+G +H+++H T Q Y NAK+ LF  +       +I  DD Y  + 
Sbjct: 199 ARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYYSDF 258

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 +     S+        +  +    +  +     +G  +     L G F V N +
Sbjct: 259 KNAVKKSF--TYSLKSNKADFFVSFIDEKIDSTRFEFYHKGVKYSANVSLLGSFNVENIM 316

Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            A   +   +  D   +++ L  +  + GR + V    +   + +DYAHT  +   +   
Sbjct: 317 AALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL-GQNFSVIIDYAHTPGAFSKLFPI 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +   + R+I VFG  G+RD  KR + G+IA + +D+ I+ D++PR E+   I  +I  G
Sbjct: 376 FKRFATNRLISVFGSAGERDVAKRFLQGQIADNYSDLIILCDEDPRGENGMCIIKDIAKG 435

Query: 436 IPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I   +         +R  AI  AI +    D++VV GKGHE+  I+    +    + +++
Sbjct: 436 IVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGKGHESS-IIYKNRELFWNEQEMV 494

Query: 490 REIL 493
           +  +
Sbjct: 495 KNAI 498


>gi|194290818|ref|YP_002006725.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224653|emb|CAQ70664.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 522

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 157/493 (31%), Positives = 221/493 (44%), Gaps = 37/493 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++S D+R +  G +F A V GN     DG  +I QAIA GA A+V  +      F     
Sbjct: 31  QLSGDTRRLSRGDVFFAYVLGNDRLATDGRPYIAQAIAAGAGAVVYEADG----FDWPFG 86

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L V    +     A+  +G     +    +TGT+GK+S + ++ ++ Q +G    
Sbjct: 87  DAVPHLAVSRLHQLAGPIAAGWHGNPARGLAVTGITGTNGKTSCSQWLARVLQATGTPCA 146

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T      Q    TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G   
Sbjct: 147 TIGTLGTGFPDALQATGFTTPDAVQLQASLATLHDAGARAVAMEVSSHGLEQERVAGTHF 206

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL +DH+DYH +   Y  AK RLF         A+I  DDA  + ++     A 
Sbjct: 207 SVAVLTNLTQDHLDYHGSMAEYEAAKARLFR--WDGLRTAVINRDDAMGQRLLAADAAAV 264

Query: 265 C--RVLSVGYQ-----------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               V+  G             G ++    V A        I       +   P+ G F 
Sbjct: 265 VAPHVIEYGIDGPAAATVRGPRGAWLRATSVRATATGTAFHIDGSFGHAEMATPMIGAFN 324

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSN 367
           V N L   G  +A G+     +  L  L  V GR E  G             VDYAHT +
Sbjct: 325 VSNLLAVLGAALANGVAWDAAIAALRALAPVEGRMELFGAAGHDAAQAPLAVVDYAHTPD 384

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +LE  L  +R +    +GR+  VFGCGGDRD  KRP+MG +A  LAD  ++T DNPRSED
Sbjct: 385 ALEQTLAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAERLADEVVLTSDNPRSED 444

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I   I  G+       +  +R  AI  A+      DV++VAGKGHE    +  G K+
Sbjct: 445 PQDILDAIADGMTERARGRQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEI-QGRKR 503

Query: 482 MSVDCDIIREILG 494
              D + +R  L 
Sbjct: 504 PFSDREHVRLALA 516


>gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
 gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
          Length = 508

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 127/484 (26%), Positives = 218/484 (45%), Gaps = 27/484 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S            
Sbjct: 25  DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRDMDF------Y 78

Query: 87  RSNTPILVVDN--TRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             N   + VDN   RKF+S F++  Y +  + +  + VTGT GKSSV  ++  + ++ G+
Sbjct: 79  SPNVTYIKVDNFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGI 138

Query: 143 SSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH- 197
               I          +      R +TP    +   LS +    V +  +E++SHGLD   
Sbjct: 139 KVGFISTVFLDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGLDLET 198

Query: 198 -RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL  +   A  FTN+G +H+++H T Q Y NAK+ LF  +       +I  DD Y  + 
Sbjct: 199 ARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYYADF 258

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 +     S+        +  +    +  +     +G  +     L G F V N +
Sbjct: 259 KNAVKKSF--TYSLKSNKADFFVSFIDEKIDSTRFEFYHKGVKYSANVSLLGSFNVENIM 316

Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            A   +   +  D   +++ L  +  + GR + V    +   + +DYAHT  +   +   
Sbjct: 317 AALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL-GQNFSVIIDYAHTPGAFSKLFPI 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +I  G
Sbjct: 376 FKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIILCDEDPRGENGMCIIKDIAKG 435

Query: 436 IPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I   +         +R  AI  AI +    D++VV GKGHE+  I+    +    + +I+
Sbjct: 436 IVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGKGHESS-IIYKNRELFWNEQEIV 494

Query: 490 REIL 493
           +  +
Sbjct: 495 KNAI 498


>gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
 gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
          Length = 508

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 126/484 (26%), Positives = 216/484 (44%), Gaps = 27/484 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I+ V+  S+ +   ++F A+ G + DGH FI  AI +G+  IV S            
Sbjct: 25  DLEISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNVIVCSRDMDF------Y 78

Query: 87  RSNTPILVVDN--TRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             N   + VD+   RKF+S F++  Y +  + +  + VTGT GKSSV  ++  + ++ G+
Sbjct: 79  SPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGV 138

Query: 143 SSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH- 197
               I          S      R +TP    +   LS +    V +  +E++SHGLD   
Sbjct: 139 KVGFISTVFFDDGNGSLIKNPYRQSTPESTEIHLFLSNMVKNNVQYAILESTSHGLDLKT 198

Query: 198 -RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL  +   A  FTN+G +H+++H T Q Y NAK+ LF  +       +I  DD Y  + 
Sbjct: 199 ARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYYSDF 258

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 +     S+        +  +    +  +     +G  +     L G F V N +
Sbjct: 259 KNAVKKSF--TYSLKSSKADFFVSFIDEKIDSTRFEFYHKGVKYFANVSLLGSFNVENIM 316

Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            A   +   +  D   +++ L  +  + GR + V    +   + +DYAHT  +   +   
Sbjct: 317 AALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL-GQNFSVIIDYAHTPGAFSKLFPI 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +   + R+I VFG  G+RD  KR + G+IA   +D+ ++ D++PR E+   I  +I  G
Sbjct: 376 FKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIVLCDEDPRGENSMYIIKDIAKG 435

Query: 436 IPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I   +         +R  AI  AI +    D++V  GKGHE   I  N E     + + +
Sbjct: 436 IVNKVVNQDLFFIPDRRLAIEKAISLARAGDLVVALGKGHENSIIYKNKEL-FWNEQEAV 494

Query: 490 REIL 493
           +  +
Sbjct: 495 KNAI 498


>gi|296113987|ref|YP_003627925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
 gi|295921681|gb|ADG62032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
          Length = 520

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 150/485 (30%), Positives = 241/485 (49%), Gaps = 29/485 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA------IAQGAEAIVVSSAYSLQDF 82
           + ++   DSR I     FV +  +++D    +  A      +   A  ++        D 
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDL 99

Query: 83  SATIRSNTPILVVDNTRKFLS-LFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQ 138
                   PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+CQ
Sbjct: 100 DGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQ 156

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ+
Sbjct: 157 ASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQY 216

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256
           RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD  +   
Sbjct: 217 RLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPA--- 273

Query: 257 MKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +     A  +++    Q      + K V    +  ++ +     +   + PL G F V N
Sbjct: 274 LFDYETADFQIIGYSQQKPNADFYAKSVRPSLDCVEIEVQTPQGEMTAISPLLGLFNVDN 333

Query: 315 ALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            L +     A+    +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +L
Sbjct: 334 LLASMAAFTALNPARAADLPNLITQLQGARGRMQR--ASSQTGAFIIDYAHTPDALKQVL 391

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++ 
Sbjct: 392 SSLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQ 451

Query: 434 HGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            G+        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  +
Sbjct: 452 KGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEI-QGVRYDFDDLAV 510

Query: 489 IREIL 493
           + E L
Sbjct: 511 LGEFL 515


>gi|145641282|ref|ZP_01796862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|145274119|gb|EDK13985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.4-21]
          Length = 393

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/384 (31%), Positives = 194/384 (50%), Gaps = 11/384 (2%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK++++  + Q  +  G  +  +G     +     + + TT S + +  +LS
Sbjct: 13  LVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLS 72

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G    S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF 
Sbjct: 73  TFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFT 132

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVT 292
           EL       +I ADD    + +    +A    ++  ++    +++    +        +T
Sbjct: 133 EL--DTQIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADIT 190

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 +     PL G F V N L+     ++ G     +L   + L  V GR E +   
Sbjct: 191 FESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIRYP 250

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           ++   + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+ 
Sbjct: 251 NK-PTVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEK 309

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            IVT DNPR+E   +I A+I+ G     +     +R +AI+ AIE   + DV+++AGKGH
Sbjct: 310 IIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGH 369

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I+ + E     D +I  + L
Sbjct: 370 EHYQIIGS-EVVHFSDQEIALDFL 392


>gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein
           [UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase ( MurF);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (MurE) ] [Thiomonas sp. 3As]
          Length = 975

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 153/472 (32%), Positives = 223/472 (47%), Gaps = 19/472 (4%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S+DSR +Q G +FVA  G   D   F+ QA+     A   ++    +       ++  IL
Sbjct: 27  SADSRSLQPGEVFVAWPGAARDPRQFVTQAL----AAGAAAALVEAEGVQHFGFTDPRIL 82

Query: 94  VVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            VD  +      A+  YG   E   +LAVTGT+GK+S A +  Q    +G     IG   
Sbjct: 83  AVDGLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLG 142

Query: 152 -TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  Q    TTP P+ L   L+ L  QG    ++EASS GLD+HRL G  + A +FT
Sbjct: 143 AGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAFT 202

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLS 269
           NL +DH+DYH    AY  AK  LF  + P    A++  DD Y+  V +    + G +V +
Sbjct: 203 NLTQDHLDYHGDMAAYARAKRALF--VWPGLQHAVLDIDDPYAASVLLADCRSRGLQVQT 260

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                K     + V      Q++T+           P+ G F + N LV A L    G+D
Sbjct: 261 TALIAKTDWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLHTTGLD 320

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRII 385
            A +   L  +  VPGR + +G       +  DYAHT ++L+  L+ +R +T    G++ 
Sbjct: 321 DAAIAAALRTVRAVPGRMQMLGGIGAPLAVI-DYAHTPDALDKALQALRPVTAKRKGKLW 379

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFG GGDRD  KRP+M +     AD  ++T DNPRSE P  I  +++ G+      +  
Sbjct: 380 CVFGAGGDRDARKRPLMAQAVEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQPAQALLI 439

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +R  AI   +      DV+++AGKGHE    +  G K+   D    R  L 
Sbjct: 440 EDRAAAIAQTLSHAAVHDVVLIAGKGHENTQEIA-GHKQAFSDAFHARMALA 490



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 136/394 (34%), Gaps = 33/394 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  ++ + +DSR +  G +FVA+ G + D H F+PQA          + A +L       
Sbjct: 517 EVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAA--------AAGARALLAEQGVG 568

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P +   +T + L L A     +    ++AVTG++GK++V   +  I         Q
Sbjct: 569 ACGLPGIEAPDTLRALGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAW---QGQ 625

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +T  +F  +  L         +  + +   G+ H    A    L +          
Sbjct: 626 DRRLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLAE-------PTV 678

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  + +A  +    +   L P+   A+  A DA +   + +A     R
Sbjct: 679 ALVNNAQREHQEFMHSVEAVAHENGAVLAAL-PQTGVAVFPAADAQAAIWVAQAAGR--R 735

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           VL    + +     +     +         V +       +    L G     NAL A  
Sbjct: 736 VLRFALREEAEADVEAEVSGHAFYRQGQLHVQLHTPAGHAEVGLQLLGRHNARNALAATA 795

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF---EFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
             +A G     +   LE    V GR         +     +  D Y    +S+   +  +
Sbjct: 796 AALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADEHTLLLIDDSYNANPDSVRAAIDVL 855

Query: 377 RTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +    ++++   G   D G      +G  A  
Sbjct: 856 TELPGRSLLLLGDMGEVGDNGPAFHAEVGTYAAQ 889


>gi|329940947|ref|ZP_08290227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300241|gb|EGG44139.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 506

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 141/494 (28%), Positives = 219/494 (44%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  QL +   +  E  +  ++ DSR ++ G ++ A+ G +  G  F+ QA       
Sbjct: 17  LAELAGQLGVAAPE-TEAGVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAA----GL 71

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSS 128
              +             +  P+LV +N R  +   A+ +YG+    +L +  TGTSGK++
Sbjct: 72  GAAAVLTDPSGAERAAATGLPVLVAENPRAGMGELAATIYGRPGRELLGIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   + +  +         I      +  TTP    L    + +  +GV  V++E
Sbjct: 132 TAYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG       FTNL  +H+++H   + YF AK +LF     +     +  
Sbjct: 192 VSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPARSRLGV--VNT 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD Y + +  +A        + G+       + V         T +  +G       PL 
Sbjct: 250 DDEYGRRLAAQATVPVVTYSAEGHPDADWRAEDVEVGPLDSTFTVLGPDGVRVTARSPLA 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D     + +  +  VPGR E V        +  DYAH ++
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDAGQPYFAVV-DYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +LK +R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLKALRKVTKGRLHIVLGCGGDRDTTKRMPMGAAAARLADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                +R  AI  A+      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRQVLREAI 501


>gi|270292442|ref|ZP_06198653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
 gi|270278421|gb|EFA24267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
          Length = 481

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 136/500 (27%), Positives = 225/500 (45%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR ++AG +F A  G       ++  
Sbjct: 9   DILKKDSLFREIIDQ-GHYYYNYSDVDFDSISYDSRKVKAGTLFFA-KGATFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P++VV++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLGWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      +T+       + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVH 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G +H+ +E SS      R+ G+    G F N+  DHI    H + + YF  K  L E  
Sbjct: 177 NGRSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +I +D  +   + ++  N          +  F   +    I N +  + S  G
Sbjct: 236 ---SRAVVINSDMDHFSVLKEQVENQ---------EHDFYGSQSSNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N++ D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIADEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  I    L
Sbjct: 462 IVQGKKEDYPGDAAIAERYL 481


>gi|189184781|ref|YP_001938566.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
 gi|189181552|dbj|BAG41332.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
          Length = 489

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 160/498 (32%), Positives = 252/498 (50%), Gaps = 36/498 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  E+I +L+          I  ++  ++  +   IF A+ G    G+ FI  A+A GA 
Sbjct: 5   NIIEIIKKLN----------IRNIAITAQSAKPNQIFFALPGISRHGNDFIDIALANGAS 54

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+   A         I S + ++VV N    +    + LY K P+ ++AVTGT GK+SV
Sbjct: 55  LIITDQA--------PITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSV 106

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSPIYLAKA------LSYLS 178
            ++ QQ+C  +G  +  IG    I++        +     P              L  L+
Sbjct: 107 VNYFQQLCMLAGEQAASIGTLGVITTNNHLNKLLNQNKIKPECATTMSYIQTRYVLHQLA 166

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+  V++EASSHGLDQ+RL  IK  A +FT+  RDH+DYH+T   Y +AK++LF+E +
Sbjct: 167 TNGINFVALEASSHGLDQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENI 226

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                AI+  +      +  +  +    ++LSV  QG    +  V +  N Q+V    + 
Sbjct: 227 VSNGIAIVNNNINELSIIQSKITDEFGLKLLSVEQQGDIQ-IIDVQSSLNGQKVHFRYKN 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D+ F  P+ G   + N L+A  L I IG+DSA ++  L  L  + GR E +   +    
Sbjct: 286 SDYKFEVPVIGRVHITNILIALLLAINIGLDSAKLIPLLSNLKPIKGRMEKIQFGN--CY 343

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIV 415
            +VDYA T N+L  +L  +R +   GR+I +FG   +RD   +R  MG +A  L+D+ IV
Sbjct: 344 AFVDYALTPNALATMLTELRALNNKGRLITIFGGSENRDAIARRVQMGIVASKLSDLVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TD +  +EDP  IR EI+      IE  NR EAI+ AI ++   D+L++AGKGHET  ++
Sbjct: 404 TDQDSGNEDPAAIRKEILQVARSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVL 463

Query: 476 TNGEKKMSVDCDIIREIL 493
             G      D + ++  L
Sbjct: 464 K-GRIINYNDMEQVKLYL 480


>gi|262184484|ref|ZP_06043905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 517

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 156/505 (30%), Positives = 243/505 (48%), Gaps = 28/505 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L        +      ++    +S  +  G +F A+ G +  G  F        A A
Sbjct: 7   LKRLAEISGGTVIGDASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAADTE---AAA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           I+  +        A      P+LVV++ R  L   ++ +Y    + +  L VTGTSGK++
Sbjct: 64  ILTDAEGKRILNDAG--EKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSGKTT 121

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  ++     +G S   IG T T I+       LTTP    L +  + + S+GVTHV +
Sbjct: 122 TSYLLEAGLLHAGYSVGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVM 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+ G +   G FTNL +DH+D+H T + YF AK  LF+     +  ++I 
Sbjct: 182 EVSSHALSLGRVQGTRFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADR-SVIC 240

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---CAIHNKQQVTISVEGKD----F 300
            DD + + + +RA       +S   QG    +        +   QQV +++   +    F
Sbjct: 241 VDDEWGRRMAQRAAARPVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTF 300

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+PG F + NA +A G+  +IGI+  + LE +EK+  VPGR E V    +     V
Sbjct: 301 EFRLPMPGTFNIANAALATGMAASIGIEPQVFLEGVEKV-AVPGRMERVD-RGQDFVAVV 358

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           DYAH   ++  +L+ +RT    ++GRI +V G GGDRD  KRP+MG  A   AD+ +VTD
Sbjct: 359 DYAHKPAAIAAVLETLRTQLEGSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVTD 418

Query: 418 DNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR+EDP  IRA ++ G           E G+R +AI   +      D ++V GKGHE 
Sbjct: 419 DNPRTEDPASIRAAVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHEV 478

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             ++ +       D + +   L  +
Sbjct: 479 GQLIGD-TVHHFDDREEMARALEAV 502


>gi|326559301|gb|EGE09728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 7169]
 gi|326567256|gb|EGE17376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 12P80B1]
          Length = 520

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 150/485 (30%), Positives = 241/485 (49%), Gaps = 29/485 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA------IAQGAEAIVVSSAYSLQDF 82
           + ++   DSR I     FV +  +++D    +  A      +   A  ++        D 
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDL 99

Query: 83  SATIRSNTPILVVDNTRKFLS-LFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQ 138
                   PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+CQ
Sbjct: 100 DGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQ 156

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ+
Sbjct: 157 ASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQY 216

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256
           RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD  +   
Sbjct: 217 RLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPA--- 273

Query: 257 MKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +     A  +++    Q      + K V    +  ++ +     +   + PL G F V N
Sbjct: 274 LFDYETADFQIIGYSQQKPNADFYAKAVRLSLDCVEIEVQTPQGEMTAISPLLGLFNVDN 333

Query: 315 ALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            L +     A+    +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +L
Sbjct: 334 LLASMAAFTALNPARAADLPNLITQLQGARGRMQR--ASSQTGAFIIDYAHTPDALKQVL 391

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++ 
Sbjct: 392 SSLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQ 451

Query: 434 HGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            G+        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  +
Sbjct: 452 KGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEI-QGVRYDFDDLAV 510

Query: 489 IREIL 493
           + E L
Sbjct: 511 LGEFL 515


>gi|257068259|ref|YP_003154514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
 gi|256559077|gb|ACU84924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
          Length = 525

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 160/496 (32%), Positives = 236/496 (47%), Gaps = 24/496 (4%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            EL   L     +  +  +  VS DSR ++ G ++ A+ G    G  F  QA  +GA   
Sbjct: 23  AELARALGAAAPE-EDLALRGVSLDSRSVEPGDLWCALPGATAHGAEFAAQAAGRGAAMA 81

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +   A   +  +A      P LVVD+ R   +L A+ ++G+  E +  + VTGT+GK+SV
Sbjct: 82  LTDPAGRERCEAA----GLPALVVDDPRSATALAAALVHGRPAERLATIGVTGTNGKTSV 137

Query: 130 ASFVQQICQRSGLSSFQIGPTST------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            + + +     G+ +  IG + T       S  A     TTP    L   L+ ++  GV 
Sbjct: 138 TTAITRALLELGVPAGAIGTSGTSYRAADGSDHAIATVRTTPEAPELHGLLARMAEDGVE 197

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VS+E SSH L  HR D +      FTNL +DH+D+H T +AY+ AK  LF     +   
Sbjct: 198 VVSMEVSSHALVLHRADEVVYDVVCFTNLTQDHLDFHGTMEAYYEAKRTLFTPAHARRGV 257

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD + + + + A        +          ++  A      V +          
Sbjct: 258 --VCVDDDWGRRLAREAQIPVTTYATRPGIDADHRAREHRADGYGSIVEVDGPDGTRTLH 315

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG   V N L A  L  AIG     V++ L +   VPGR E V      G +  DY+
Sbjct: 316 AALPGRHYVANTLAADLLLAAIGRTGEDVVQALGEAGTVPGRMEPVAHTPIRGVV--DYS 373

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           HT ++LE  L  +R +   GR++VV G GGDRD+ KRP+MG++A   AD+ +VTDDNPR+
Sbjct: 374 HTPDALEQALLTLRAVPGTGRLLVVMGAGGDRDRAKRPLMGEVAARYADVVLVTDDNPRT 433

Query: 423 EDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           EDP  IRAE++ GIP        +   R EAI  A  + +  D ++VAGKG ET   +  
Sbjct: 434 EDPAAIRAEVLSGIPEGTKAQVHDVDGRGEAIALAAYLADVSDTILVAGKGAETGQQI-G 492

Query: 478 GEKKMSVDCDIIREIL 493
           G      D   +R+ L
Sbjct: 493 GIVHPFDDRLRLRDAL 508


>gi|161526010|ref|YP_001581022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349273|ref|YP_001944901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|160343439|gb|ABX16525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia multivorans
           ATCC 17616]
 gi|189333295|dbj|BAG42365.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
          Length = 513

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 148/475 (31%), Positives = 223/475 (46%), Gaps = 28/475 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++          +A +     
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVLYQPEGLAATPNAPVA---- 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   + +LA+  TGT+GK+S   ++             IG 
Sbjct: 86  -LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIAAALTALHQPCAIIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DDA  + ++++      R +
Sbjct: 205 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRAAVVNRDDAAGRRLLEKLAGR-VRTI 261

Query: 269 SVGYQGKFIH--------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        +     D D      G F V N L   G
Sbjct: 262 AYGIGDAQQAPDADRELVAIDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLG 321

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + +L  V GR + +G    +    + +DYAHT ++LE  L  +R 
Sbjct: 322 ALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 381

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR+I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +I+ G
Sbjct: 382 IAVARGGRLICMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQAIIDQIVAG 441

Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 MTAPDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 495


>gi|225677128|ref|ZP_03788128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225590832|gb|EEH12059.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 514

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 175/534 (32%), Positives = 277/534 (51%), Gaps = 67/534 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED----- 55
           MKL++L++          +I  + + + +I  V+ + + ++ G++FV +   +       
Sbjct: 1   MKLRELLH----------NIIDVNF-DIEIKGVTCNPKRVKEGYLFVCVS-ERSKEYATC 48

Query: 56  --G------------HLFIPQAIAQGAE--------------AIVVSSAYSLQD-----F 82
             G            H  +   I QGA+               IV      L +      
Sbjct: 49  DTGIHILPTESQCYVHNCVDVVI-QGAKKDVIPVLDYLDPENLIVNEHTKQLYNKNWIPV 107

Query: 83  SATIRSNTP---ILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQ 138
           SAT  +NTP   +L   N ++  S   SR Y  K P+ + AVTGT+GK+SV  F +QI Q
Sbjct: 108 SATCMTNTPGFAVLEHLNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ 167

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            SG ++  IG   T  +  +     + +        + L    V H+ +E+SSHG+DQ+R
Sbjct: 168 NSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGISVEHLVLESSSHGIDQYR 227

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + G+KL A +FTN  +DH+DYH++   Y   K RLF E+LP+   AI+ AD      ++K
Sbjct: 228 IHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGALLK 287

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A     +V++ G +G  I L +  + HN Q +T+ ++ + ++  FP+ G+FQ YN L A
Sbjct: 288 IAEKRSNKVVTYGKKGSDITLLEQTSTHNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCA 347

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+    G++   +   +EKL   PGR E V         +VDYAHT ++L+  L +++ 
Sbjct: 348 IGIS---GLNYREIC--VEKLVSPPGRMEKVK-----PFAFVDYAHTPSALKQALLSLKW 397

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
             + +II+VFGCGG+RDQ KR  MGKIA   AD  I+TDDN R EDP KIR +I+   P 
Sbjct: 398 HINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPD 457

Query: 439 FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            +E G R +AI   +++  N+  +L+VAGKG+E   I+ N   +   D ++I+ 
Sbjct: 458 ALEIGGRRKAIEKGVDIAYNEGMILLVAGKGNEKFQIIGNQTFE-FSDVEVIKN 510


>gi|259507672|ref|ZP_05750572.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|259164719|gb|EEW49273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 509

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 151/491 (30%), Positives = 225/491 (45%), Gaps = 22/491 (4%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
            +F    ++ +I+ +  DS  +     IF A+ G+++ G  F     A GA A++     
Sbjct: 15  ELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAAGALAVLTDRDG 74

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQ 135
           +            P L+VD+ R+ L + +S +YG    +++ +  T           +++
Sbjct: 75  AT--ILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTSGKTTTSYLLER 132

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
               +G     IG T T I       +LTTP    L K    +   GVTHV +E SSH L
Sbjct: 133 GLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVTHVVMEVSSHAL 192

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYS 253
              R+ G      +FTNL +DH+D+H T + YF+AK   F    P      ++  DD + 
Sbjct: 193 SLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAADHQVVCIDDEWG 252

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQV 312
             + + A NA   V + G +  F           +Q  T++V    +      LPG F V
Sbjct: 253 TRMAEVAGNAQT-VATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPVTLALPGAFNV 311

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA +A    +  G+D       + ++  VPGR E +    +     VDYAH   ++  +
Sbjct: 312 ANATLALAAAVRAGVDPVAFARGMAQV-AVPGRMERID-EGQDFLAVVDYAHKPAAVAAV 369

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +RT   GR+ VV G GGDRD  KR  MG+++   AD+ IVTDDNPRSE P  IRA +
Sbjct: 370 LDTLRTQIDGRLGVVIGAGGDRDATKRAPMGELSARRADLVIVTDDNPRSEVPATIRAAV 429

Query: 433 IHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + G               E G+R EAIR  IE     D +VVAGKGHE   ++  G    
Sbjct: 430 MEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVVAGKGHEVGQLIA-GVTHH 488

Query: 483 SVDCDIIREIL 493
             D + +RE L
Sbjct: 489 FDDREQVREAL 499


>gi|254382597|ref|ZP_04997955.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
 gi|194341500|gb|EDX22466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
          Length = 567

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 144/478 (30%), Positives = 222/478 (46%), Gaps = 22/478 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  ++ DSR ++ G ++ A+ G K  G  F  QA A GA A++   A +         +
Sbjct: 85  PVTGITHDSRAVRPGDLYAALPGAKLHGADFAAQAAALGAAAVLTDPAGA----DRAAAT 140

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+L V + R  +   A+ +YG+  E +L   +TGTSGK++ A  V+   + +G S+  
Sbjct: 141 GLPVLAVADPRGRMGELAAEIYGRPGEGLLQLGITGTSGKTTTAYLVEGGLRGAGRSTGL 200

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     I      +  TTP    L    + +  +GV  V++E SSH L   R+DG    
Sbjct: 201 VGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCVFD 260

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              F NL  +H+++H   + YF AK RLF E   +     +  DD Y + + K A     
Sbjct: 261 VAVFNNLSPEHMEFHSDMEDYFQAKARLFTERRARLGV--VNFDDEYGRRLAKEASIPVV 318

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              + G        + V   H    +T+   EG+      PLPG F V N + A     A
Sbjct: 319 TFSAAGDPAADWRAEDVVFGHMDSTLTLVGPEGQRVRATAPLPGPFNVANTVAAIVTLAA 378

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+D     + +  +  VPGR E V    +     VDYAH ++++E +L+ +R +T+G++
Sbjct: 379 AGLDPQTAADGVAAVPGVPGRLERVDA-GQPYLAVVDYAHKTDAVESVLRALREVTTGKL 437

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            +V GCGGDRD  KR  MG  A   AD A++T DNPRSEDP  I   +  G    +    
Sbjct: 438 HIVLGCGGDRDTTKRAPMGAAAARFADTAVLTSDNPRSEDPLTILGAMFEGAVS-VPPAE 496

Query: 445 RIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R   +           A+      D ++VAGKGHE     T G  +   D  ++R  +
Sbjct: 497 RGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHEQGQD-TAGVVRPFDDRAVLRAAI 553


>gi|25028614|ref|NP_738668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|30316046|sp|Q8FNT5|MURE_COREF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23493900|dbj|BAC18868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 526

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 151/491 (30%), Positives = 225/491 (45%), Gaps = 22/491 (4%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
            +F    ++ +I+ +  DS  +     IF A+ G+++ G  F     A GA A++     
Sbjct: 32  ELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAAGALAVLTDRDG 91

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQ 135
           +            P L+VD+ R+ L + +S +YG    +++ +  T           +++
Sbjct: 92  AT--ILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTSGKTTTSYLLER 149

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
               +G     IG T T I       +LTTP    L K    +   GVTHV +E SSH L
Sbjct: 150 GLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVTHVVMEVSSHAL 209

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYS 253
              R+ G      +FTNL +DH+D+H T + YF+AK   F    P      ++  DD + 
Sbjct: 210 SLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAADHQVVCIDDEWG 269

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQV 312
             + + A NA   V + G +  F           +Q  T++V    +      LPG F V
Sbjct: 270 TRMAEVAGNAQT-VATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPVTLALPGAFNV 328

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA +A    +  G+D       + ++  VPGR E +    +     VDYAH   ++  +
Sbjct: 329 ANATLALAAAVRAGVDPVAFARGMAQV-AVPGRMERID-EGQDFLAVVDYAHKPAAVAAV 386

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +RT   GR+ VV G GGDRD  KR  MG+++   AD+ IVTDDNPRSE P  IRA +
Sbjct: 387 LDTLRTQIDGRLGVVIGAGGDRDATKRAPMGELSARRADLVIVTDDNPRSEVPATIRAAV 446

Query: 433 IHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + G               E G+R EAIR  IE     D +VVAGKGHE   ++  G    
Sbjct: 447 MEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVVAGKGHEVGQLIA-GVTHH 505

Query: 483 SVDCDIIREIL 493
             D + +RE L
Sbjct: 506 FDDREQVREAL 516


>gi|326564323|gb|EGE14553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 103P14B1]
 gi|326565088|gb|EGE15281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 46P47B1]
 gi|326569939|gb|EGE19986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC1]
 gi|326570017|gb|EGE20063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC7]
 gi|326573677|gb|EGE23635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis O35E]
 gi|326574700|gb|EGE24636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 101P30B1]
          Length = 520

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 150/483 (31%), Positives = 237/483 (49%), Gaps = 25/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA------IAQGAEAIVVSSAYSLQDF 82
           + ++   DSR I     FV +  +++D    +  A      +   A  ++        D 
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDL 99

Query: 83  SATIRSNTPILVVDNTRKFLS-LFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQ 138
                   PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+CQ
Sbjct: 100 DGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQ 156

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ+
Sbjct: 157 ASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQY 216

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256
           RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD      
Sbjct: 217 RLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDE-PALF 275

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A +      S        + K V    +  ++ +     +   + PL G F V N L
Sbjct: 276 DYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLL 335

Query: 317 VAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +     A+    +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +L +
Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQR--ASSQTGAFIIDYAHTPDALKQVLSS 393

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  G
Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  ++ 
Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEI-QGVRYDFDDLAVLG 512

Query: 491 EIL 493
           E L
Sbjct: 513 EFL 515


>gi|326568238|gb|EGE18320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC8]
          Length = 520

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 150/483 (31%), Positives = 237/483 (49%), Gaps = 25/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA------IAQGAEAIVVSSAYSLQDF 82
           + ++   DSR I     FV +  +++D    +  A      +   A  ++        D 
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDL 99

Query: 83  SATIRSNTPILVVDNTRKFLS-LFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQ 138
                   PI+ V N R +L  L A+RL   H      I+AVTGT+GK++V+  + Q+CQ
Sbjct: 100 DGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQ 156

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ+
Sbjct: 157 ASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQY 216

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256
           RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L P     ++  DD      
Sbjct: 217 RLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDE-PALF 275

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A +      S        + K V    +  ++ +     +   + PL G F V N L
Sbjct: 276 DYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLL 335

Query: 317 VAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +     A+    +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +L +
Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQR--ASSQTGAFIIDYAHTPDALKQVLSS 393

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  G
Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  ++ 
Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEI-QGVRYDFDDLAVLG 512

Query: 491 EIL 493
           E L
Sbjct: 513 EFL 515


>gi|89902199|ref|YP_524670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
 gi|89346936|gb|ABD71139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
          Length = 538

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 155/525 (29%), Positives = 230/525 (43%), Gaps = 55/525 (10%)

Query: 17  QLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           Q  I  + W   ++   + +DSR +Q G  F+A  G   D   F+  A+A GA A +V  
Sbjct: 5   QTPIEAVAWLRSRVTGTLQTDSRKLQPGDGFIAWPGAAADARQFVASALASGAGACLVER 64

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
             +     A   S+  +    N +    L A+  + +  + +  LAVTGT+GK+S A ++
Sbjct: 65  LGA----EAYAFSSDKVAAYANLKAASGLIAAAYFDQPSQQLDVLAVTGTNGKTSTAWWL 120

Query: 134 QQICQRSG-LSSFQIGPTSTIS-------------------------SFAQDNRLTTPSP 167
            Q       ++    G   T+                          +      LTTP P
Sbjct: 121 AQALSNLKLVTPIPCGLVGTLGIGTPPPPASGQPPVGLVAAHGADPLAGMVATGLTTPDP 180

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L +AL     +G    ++EASS GL + RL+G  +    FTN  +DH+DYH    AY+
Sbjct: 181 VLLQQALRRFVDRGFQACALEASSIGLQEQRLNGTHIRTAIFTNFTQDHLDYHGAMAAYW 240

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIH 286
             K  LF+   P    A+I  DD    E+ +        V +V    +       +    
Sbjct: 241 QVKASLFQ--WPGLQSAVINIDDPQGAELAETLRGKLLDVWTVSCVAEARLQACDIVHDA 298

Query: 287 NKQQVTI-----------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              + T+              G+       L G + V N L        +G+  A V+  
Sbjct: 299 PGLRFTVLEHGPDGANGPGGAGQRHVLQTRLIGSYNVANLLGVMAAMRCLGVPLAAVVAS 358

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGG 392
              L  VPGR E  G   +      DYAHT ++L   L+ +R +     GR+  VFGCGG
Sbjct: 359 CADLTAVPGRMECWGAPGQPLAAV-DYAHTPDALGKALQALRPLADQRGGRLWCVFGCGG 417

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAI 449
           DRD  KRP+MG IA   AD  +VT DNPRSE P+ I ++I+ G+ G+     + +R  AI
Sbjct: 418 DRDTAKRPLMGAIAASHADCVVVTSDNPRSERPDAIISQILLGLTGYPALTVEPDRARAI 477

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             AI     QDVL++AGKGHE    V  G++    D + +R  LG
Sbjct: 478 AQAIAQAAPQDVLLIAGKGHEDYQEVA-GQRLPFSDAEQVRRALG 521


>gi|221213282|ref|ZP_03586257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
 gi|221166734|gb|EED99205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
          Length = 513

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 147/475 (30%), Positives = 223/475 (46%), Gaps = 28/475 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++          +A +     
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVLYQPEGLAATPNAPVA---- 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   + +LA+  TGT+GK+S   ++             IG 
Sbjct: 86  -LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIAAALTALHQPCAIIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DDA  + ++++      R +
Sbjct: 205 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRAAVVNRDDAAGRRLLEKLAGR-VRTI 261

Query: 269 SVGYQGKFIH--------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        +     D D      G F V N L   G
Sbjct: 262 AYGIGDAQQAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLG 321

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + +L  V GR + +G    +    + +DYAHT ++LE  L  +R 
Sbjct: 322 ALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 381

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +I+ G
Sbjct: 382 IAVARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQAIIDQIVAG 441

Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 MTAPDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 495


>gi|320531617|ref|ZP_08032559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136146|gb|EFW28152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 528

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 150/485 (30%), Positives = 231/485 (47%), Gaps = 25/485 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  I  VS DS     G +FV + G    G  F  +A+A GA A++  S  +     + 
Sbjct: 43  NDLSILGVSVDSADTAPGELFVGLPGFTVHGARFAAEAVASGAVAVLTDSDGAQIVHESA 102

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRS-GL 142
               TP+LV  + R  +   ++  Y      ++  AVTGT+GK++ A F+  I     G 
Sbjct: 103 --PGTPVLVHGDPRAIVGPLSAEAYHHPARGLITTAVTGTNGKTTTAYFLDAILSAHVGG 160

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                     +   + ++  TT     L + ++      V   S+EASSH +  HRLDGI
Sbjct: 161 CMVAGTVELRVGEHSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGI 220

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +    FTNL RDH+D+H+T + Y  AK RLF     +     +  DD +   +   A  
Sbjct: 221 VVDVAGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARRGV--VCVDDQWGAALAADAPI 278

Query: 263 AGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVA 318
              RV +  G       +            T ++   +G+  +   PLPG   V NA +A
Sbjct: 279 EIDRVRAYPGDAPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALA 338

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIR 377
             + I  G+ +A     L   H +PGR + +     R G   VD+AHT  ++E+ LK +R
Sbjct: 339 LVMAIRAGVPAATAAAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELALKAVR 398

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            IT GR+IVVFG  GDRDQGKRP++G++   LAD+ ++TD+NPRSEDP+ IR  I+ G+ 
Sbjct: 399 PITPGRLIVVFGSDGDRDQGKRPMLGQVCARLADVLVITDENPRSEDPQLIRDAILDGVR 458

Query: 438 GFIEKGN----------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           G   + +          R +A+R  +E+    D ++V GKGHE    +     +   D  
Sbjct: 459 GV--RPDLKDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMAGEFIRY-NDAP 515

Query: 488 IIREI 492
           ++ E 
Sbjct: 516 VMAEA 520


>gi|148284402|ref|YP_001248492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
 gi|146739841|emb|CAM79765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
          Length = 489

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 159/495 (32%), Positives = 253/495 (51%), Gaps = 36/495 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  E+I +L+          I  ++  ++  +   IF A+ G    G+ FI  A+A GA 
Sbjct: 5   NIIEIIKKLN----------IRNIAITAQSAEPNQIFFALPGISRHGNDFIDIALANGAS 54

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+   A+        I S + ++VV N    +    + LY K P+ ++AVTGT GK+SV
Sbjct: 55  LIITDQAH--------ITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSV 106

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSPIYLAK------ALSYLS 178
            ++ QQ+C  +G  +  IG    I++        +   T P              L  L+
Sbjct: 107 VNYFQQLCMLAGEQAASIGTLGVITTNDHLNKRLNQNKTKPECATTMSYIQTRYLLHQLA 166

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+  V++EASSHGLDQ+RL  IK  A +FT+  RDH+DYH+T   Y +AK++LF+E +
Sbjct: 167 TNGINFVALEASSHGLDQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENI 226

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                AI+  +      +  +  +    ++LSV  QG    +  V +  N Q+V    + 
Sbjct: 227 VSNGIAIVNNNINELSIIQSKITDEFGLKLLSVEQQGDIQ-IINVQSSLNGQKVHFRYKN 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D+ F   + G   + N L+A  L +  G DSA ++  L  L  + GR E +   +    
Sbjct: 286 SDYKFEVLVIGRVHITNILIALLLAVNAGFDSAKLIPLLSNLKPIKGRMEKIQFGN--CY 343

Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPI-MGKIALDLADIAIV 415
            +VDYA T N+L  +L  +RT+ + GR+I +FG   +RD   R + MG +A  L+D+ IV
Sbjct: 344 AFVDYALTPNALATMLTELRTLNSKGRLITIFGGSENRDAIARRMQMGIVASKLSDLVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TD +  +EDP  IR EI+   P  IE  NR EAI+ AI ++   D+L++AGKGHET  ++
Sbjct: 404 TDQDSGNEDPAAIRKEILQVAPSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVL 463

Query: 476 TNGEKKMSVDCDIIR 490
             G      D + ++
Sbjct: 464 K-GRIINYNDMEQVK 477


>gi|325067117|ref|ZP_08125790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces oris K20]
          Length = 528

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 150/479 (31%), Positives = 231/479 (48%), Gaps = 25/479 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS DS    AG +FV + G    G  F  QA+A GA A++  +  +           TP
Sbjct: 49  GVSVDSGDTAAGELFVGLPGFTVHGARFAAQAVASGAVAVLTDADGAQIVHETA--PGTP 106

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRS-GLSSFQIG 148
           +LV D+ R  +   ++ +Y      ++  AVTGT+GK++ A F+  I     G       
Sbjct: 107 VLVHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGT 166

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +   + ++  TT     L + ++      V   S+EASSH +  HRLDG+ +    
Sbjct: 167 VELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGLVVDVAG 226

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+D+H+T + Y  AK +LF     +     +  DD +   +   A     RV 
Sbjct: 227 FTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARRGV--VCVDDQWGAALAAEAPIEIDRVR 284

Query: 269 SV-GYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +  G       +            T ++   +G+  +   PLPG   V NA +A  + I 
Sbjct: 285 AYPGDTPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIR 344

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            G+ +A     L   H +PGR + +     R G   VD+AHT  ++E+ LK +R IT GR
Sbjct: 345 AGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELALKAVRPITPGR 404

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +IVVFG  GDRDQGKRP++G++   LAD+ +VTD+NPRSEDP+ IR  I+ G+ G   + 
Sbjct: 405 LIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEGVRGV--RP 462

Query: 444 N----------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +          R +A+R  +E+    D ++V GKGHE    +     +   D  ++ E 
Sbjct: 463 DLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMAGEFIRY-NDAPVMAEA 520


>gi|319941796|ref|ZP_08016118.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804729|gb|EFW01596.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
          Length = 510

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 159/489 (32%), Positives = 228/489 (46%), Gaps = 34/489 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR ++ G IF A+ G K DG  FI  A             Y  +          P
Sbjct: 21  HLRLDSREVKPGDIFCAVPGEKVDGRTFIRVAA----ARGAAGVIYEAETSQRPEHYPLP 76

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              V++ R+ L   A+R Y +   ++  +AVTGT+GK++   +   +    G  S  IG 
Sbjct: 77  AKPVEHLRERLGEIAARFYDEPSAHMTGVAVTGTNGKTTTTFWTASLLTALGSPSGIIGT 136

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                         LTTP    L   L  L   G     +EASS GLDQ R+ G     G
Sbjct: 137 VGVFFAGRQIPAPHLTTPDAASLQGILKDLEETGAKSFVMEASSVGLDQGRMKGTHFKVG 196

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYHQT +AY  AK  LF    P    A++ A DA+S++    A   G  +
Sbjct: 197 VFTNLSRDHLDYHQTMEAYGEAKGLLFA--WPGLKAAVLNASDAWSRKYADAAQKNGSEI 254

Query: 268 LSVGYQGKFI------------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              G +G+                K++   H   + T+  + ++F       G F V NA
Sbjct: 255 WVTGLEGEAASFGQAFGAAHVLEAKQIEPSHRGMRFTLVCDKREFPVELHALGTFNVDNA 314

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L AA    A G     V+  LE L   PGR +   ++     +  D+ HT ++LE  ++ 
Sbjct: 315 LEAAAAAAACGHPIEKVVRALEALTPPPGRMQIFESDGMPLGVV-DFGHTPDALEKAIEC 373

Query: 376 IRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+  VFGCGGDRD GKRPIMG+IA  L+D  IVT DNPR+E+P+ I   I
Sbjct: 374 LIPNARARGGRLWTVFGCGGDRDAGKRPIMGEIAARLSDQVIVTSDNPRTENPQAIVDAI 433

Query: 433 IHGIPGF-------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           + G+          +   +R EAI  A+   + +D+++VAGKGHE   I+ +G     VD
Sbjct: 434 MQGVQAVPGADQRTMAVVDRREAIHRAVFAADAKDIILVAGKGHECEQILNDGP-HHFVD 492

Query: 486 CDIIREILG 494
            +++RE   
Sbjct: 493 GEVLREAFN 501


>gi|300780827|ref|ZP_07090681.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532534|gb|EFK53595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 498

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 159/476 (33%), Positives = 231/476 (48%), Gaps = 24/476 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S DS  +++G +F A+ G +  G  F   A A  A A++   A    D        
Sbjct: 27  VSAISLDSNAVKSGAMFAALPGTRVHGATF---AHASDASAVLTDDAG--WDILRETGFE 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LVV+  R  L   A+ +YG   E++  + VTGTSGK++    ++     +G +   I
Sbjct: 82  RPVLVVERVRDILGDVAAEIYGHPTEHLTVIGVTGTSGKTTTTYLLESGLTAAGCAVGLI 141

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G T T I        LTTP    L +  + + S+GVTHV +E SSH L   R+DG K  A
Sbjct: 142 GTTGTRIKGEDVPTSLTTPEAPKLQELFADMVSRGVTHVVMEVSSHALVLGRVDGTKFAA 201

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+D+H T + YF AK  LF+        A++  DD + +++ +RAH+    
Sbjct: 202 AGFTNLSQDHLDFHPTMEDYFEAKAILFDR----AEKAVVCIDDEWGQKMTQRAHSP-VT 256

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V                     Q +T+ + G+D     PLPG F + N  +A  L  ++G
Sbjct: 257 VGVHNTSADCTARLDSVTESGAQDITVRIGGQDISTRIPLPGAFNIANTALATALADSVG 316

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ID  + L+ L+    VPGR E V    +     VDYAH   ++   L ++R    GRI V
Sbjct: 317 IDPKVFLQGLDAAR-VPGRMERVSV-GQPFVAVVDYAHKPAAVAAALDSLREQVDGRIGV 374

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI------ 440
           V G GGDRD  KRP+MG  A   AD+ I+TDDNPR+EDP  IRA +  G    I      
Sbjct: 375 VVGAGGDRDHSKRPLMGAEAATRADLVIITDDNPRTEDPAAIRAAVKQGAESVIDGAATD 434

Query: 441 --EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             E  +R +AI   +      D ++V GKGHE   I+         D + +   L 
Sbjct: 435 IREVASRAQAIADLVAWAEPGDAIIVVGKGHEVGQIIGE-TTHHFDDREEVAFALA 489


>gi|221202509|ref|ZP_03575539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
 gi|221208169|ref|ZP_03581174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221172072|gb|EEE04514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221177604|gb|EEE10021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
          Length = 513

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 148/475 (31%), Positives = 225/475 (47%), Gaps = 28/475 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   FI  A+A+GA A++          +A +     
Sbjct: 30  QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVLYQPEGLAATPNAPVA---- 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   + +LA+  TGT+GK+S + ++             IG 
Sbjct: 86  -LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCSQWIAAALTALHQPCAIIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK +LF         A++  DDA  + ++++      R +
Sbjct: 205 FTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRAAVVNRDDAAGRRLLEKLAGR-VRTI 261

Query: 269 SVGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G       L          V A        +     D D      G F V N L   G
Sbjct: 262 AYGIGDTQQALDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLG 321

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + +L  V GR + +G    +    + +DYAHT ++LE  L  +R 
Sbjct: 322 ALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 381

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +I+ G
Sbjct: 382 IAVARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQAIIDQIVAG 441

Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 MTAPDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 495


>gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardia farcinica IFM 10152]
 gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Nocardia farcinica IFM
           10152]
          Length = 536

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 154/495 (31%), Positives = 236/495 (47%), Gaps = 29/495 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL    +  P+   +  +  +   S  +Q G +F A+ G    G  F   A+A+GA A+ 
Sbjct: 37  ELTGAHAAAPVPA-DVVVTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDAVARGAVAVF 95

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
             +  +            P+LV +  R+ L   ++ +YG+  + +  + +TGTSGK++ +
Sbjct: 96  TDAEGAR----VLDGLTVPVLVRERPREVLGELSAAVYGQPSQRLRLIGITGTSGKTTTS 151

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V+     +GLS+  IG   T I      + LTTP    L    + +  QGV  V +E 
Sbjct: 152 YLVEAGLAAAGLSTALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQAVVMEV 211

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYA 248
           SSH L   R+DG++   G+FTNL +DH+D+H   + YF AK RLFE   P     A++  
Sbjct: 212 SSHALALGRVDGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPVAARTAVVCV 271

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDA+ + + +         +S   +  +     V  +  +Q+ T +    +      LPG
Sbjct: 272 DDAWGRRLAEGLAAPI--TVSTTGEADWRVAGGVATVGAEQEFTAAGPAGELGVRLRLPG 329

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + V NAL+A  +C A   D A+    L  +  VPGR + V    +     VDYAH   +
Sbjct: 330 RYNVANALLAVAVCAAARADPAVAAPALATVD-VPGRMQRV-ERGQDFLAVVDYAHKPAA 387

Query: 369 LEMILKNIRTI-------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           LE ++  +R           GR+ VV G GGDRD GKR +MG      AD+ ++TDDNPR
Sbjct: 388 LESVIATLREHLAAADPEHPGRLAVVVGAGGDRDAGKRALMGAAGARGADLLVITDDNPR 447

Query: 422 SEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +EDP  IRA +  G             E G+R  AI  A+    + D ++VAGKGHET  
Sbjct: 448 TEDPATIRAALRAGALEVPAEVRGEVREIGDRAAAIEAAVAWARRGDAVLVAGKGHETGQ 507

Query: 474 IVTNGEKKMSVDCDI 488
            +  G K    D ++
Sbjct: 508 EIA-GVKHPFDDREV 521


>gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 410

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 132/431 (30%), Positives = 207/431 (48%), Gaps = 31/431 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADDA S  + K        +++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQK---ATAAHIITFGIKQEADFQASNIKITSHGST 280

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V 
Sbjct: 281 FDLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVH 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A
Sbjct: 341 A-GQEFPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYA 399

Query: 411 DIAIVTDDNPR 421
              I T +NPR
Sbjct: 400 TNPIFTSNNPR 410


>gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
 gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
          Length = 486

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 144/508 (28%), Positives = 229/508 (45%), Gaps = 49/508 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKE-- 54
           M L++L                 +     +  ++ DSR ++ G++FVA+ G    ++   
Sbjct: 1   MTLKELFAP-----------LGQEAPPLPVRGLTQDSRRVEPGFVFVAVPGVPLPHRRPL 49

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DGH FIP+A+ +GA A+V     +L           P   V ++R+ L+L A R YG+  
Sbjct: 50  DGHAFIPEALRRGAIAVVGEQDLTLP---------VPYARVADSRQALALLARRFYGEPD 100

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +  VTG+ GKS+ A  +  + + + L S  +G      +       TTP    +  
Sbjct: 101 RALRLFGVTGSKGKSTTAFLLHHLLEEAALLS-TVGLRLGGEARPPIGHFTTPEAPEVYA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-HIDYHQTQQAYFNAKM 231
            L   + +G+    +E SSH L   R++G+    G F N   D H+D+H T +AYFNAK 
Sbjct: 160 FLREAADRGLREAVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTPEAYFNAKT 219

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L E        A++     + + + +R H      L  G  G+     +        + 
Sbjct: 220 LLVER----SDLAVLNTSLTHLERLRQRPH------LLFGPGGEVWA--EGVREEEGLRF 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+       +   PL G   V NAL A+   +A G+    VLE L     VPGR E V  
Sbjct: 268 TLHTPWGKGEVHLPLIGAHNVENALAASAAALAAGVPLEKVLERLSGFPGVPGRMEVVQE 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +  R+ +D+AHT  SLE  L+ +R  T GR+++V G  G+RD  +R  +G++A  LAD
Sbjct: 328 --KPFRVVIDFAHTGKSLEAALRTLRPTTQGRLLLVVGAAGERDPRRREDIGRVAARLAD 385

Query: 412 IAIVTDDNPRSEDPEKIR----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            A  T+++ R+ED   I              F    +R EAI  AI    + D +++AGK
Sbjct: 386 KAFFTEEDHRTEDLGAILEAMARAAAAEGGRFELVPDREEAILKAILEAQEGDTVLLAGK 445

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGL 495
           GHE   +    E     + ++  + L L
Sbjct: 446 GHEAT-LERGQEALPWNEREVALKALRL 472


>gi|134294642|ref|YP_001118377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
 gi|134137799|gb|ABO53542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
          Length = 512

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 141/477 (29%), Positives = 223/477 (46%), Gaps = 33/477 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ +D+R +QAG +F+   G   DG     FI  A+A+GA A++          +  +  
Sbjct: 30  QLHADTRSLQAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVAF 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQ 146
                      +     AS  YG   + +LA+  TGT+GK+S   ++             
Sbjct: 87  AV-----PGLDQLAGEIASGWYGDPSDALLAIGVTGTNGKTSCTQWIAAALTALHQPCAL 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G    
Sbjct: 142 IGTLGSGMPGQLVPTGFTTPDAPQLQRSLARLRDAGAKAVAMEVSSHALHQGRVNGTAFD 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH+T  AY  AK +LF         A++  DDA  + ++++      
Sbjct: 202 IAVFTNLTQDHLDYHRTFDAYEAAKAKLFT--WRGLRAAVVNRDDAAGRRLLEKLAGR-V 258

Query: 266 RVLSVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R ++ G          + +    V A        +     + D      G F V N L  
Sbjct: 259 RTIAYGIGDAPSAGADRELVATDVRATAAGTAFRLRSSWGEADVEVGTLGTFNVSNLLAV 318

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNI 376
            G  +A  +     +  + +L  V GR + +G   +     + +DYAHT ++L+  L+ +
Sbjct: 319 LGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRPQNDEPLVVIDYAHTPDALDKTLEAL 378

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  +I+
Sbjct: 379 RPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQIV 438

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G+          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D
Sbjct: 439 AGMTAPDRARRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRTFSDQD 494


>gi|227833496|ref|YP_002835203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454512|gb|ACP33265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
          Length = 500

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 155/486 (31%), Positives = 241/486 (49%), Gaps = 28/486 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++    +S  +  G +F A+ G +  G  F        A AI+  +        A     
Sbjct: 9   VSSCGLNSAALPPGGLFAALPGTRVHGARFAADTE---AAAILTDAEGKRILNDAG--EK 63

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LVV++ R  L   ++ +Y    + +  L VTGTSGK++ +  ++     +G S   I
Sbjct: 64  RPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSGKTTTSYLLEAGLLHAGYSVGLI 123

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G T T I+       LTTP    L +  + + S+GVTHV +E SSH L   R+ G +   
Sbjct: 124 GTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGRVQGTRFDV 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL +DH+D+H T + YF AK  LF+     +  ++I  DD + + + +RA      
Sbjct: 184 GGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADR-SVICVDDEWGRRMAQRAAARPVI 242

Query: 267 VLSVGYQGKFIHLKKV---CAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAA 319
            +S   QG    +        +   QQV +++   +    F+F  P+PG F + NA +A 
Sbjct: 243 RVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNIANAALAT 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+  +IGI+  + LE +EK+  VPGR E V    +     VDYAH   ++  +L+ +RT 
Sbjct: 303 GMAASIGIEPQVFLEGVEKV-AVPGRMERVD-RGQDFVAVVDYAHKPAAIAAVLETLRTQ 360

Query: 380 ---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
              ++GRI +V G GGDRD  KRP+MG  A   AD+ +VTDDNPR+EDP  IRA ++ G 
Sbjct: 361 LEGSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVTDDNPRTEDPASIRAAVLAGA 420

Query: 436 -----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                     E G+R +AI   +      D ++V GKGHE   ++ +       D + + 
Sbjct: 421 QEANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHEVGQLIGD-TVHHFDDREEMA 479

Query: 491 EILGLI 496
             L  +
Sbjct: 480 RALEAV 485


>gi|302528474|ref|ZP_07280816.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
 gi|302437369|gb|EFL09185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
          Length = 519

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 248/503 (49%), Gaps = 26/503 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+ +    LI        +  +  +   +  ++H+  G +F  + G +  G  F  Q
Sbjct: 23  LATLLARAGARLIAD----RPEAADLTVTGTTLRAQHVLPGDLFAGLPGARAHGADFSDQ 78

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+A GA A++   + +  D  A   +  P+LV  + R  L   A+ +YG+   ++  L V
Sbjct: 79  ALAAGAAAVLTDPSGA--DRPALRDAPVPVLVHPDPRAALGEIAAWIYGEPSLHLSVLGV 136

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++ +  V    + +G ++  IG   T I+     +  TTP    L   L+ +  
Sbjct: 137 TGTSGKTTTSYLVDSGLRAAGRTTGLIGTVETRIAGERLASGFTTPEAPDLQALLAVMLE 196

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV +E SSH L   R++G +   G+FTNL +DH+D+H+  + YF AK  LF+    
Sbjct: 197 RGVTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMEEYFAAKSLLFDG--- 253

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGK 298
           + +  ++  D A+ + ++          +  G    +           +Q  T+   +G 
Sbjct: 254 RSTTEVVVVDSAWGQALL--TPQTVTVSIEAGADALWRAADIEATPAGEQTFTLLGPDGL 311

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PLPG F V NA++AA +  + GID+  ++  L  +  VPGR E V    +    
Sbjct: 312 SRAAKIPLPGTFNVANAVLAAAILASAGIDADDIVAGLAAVE-VPGRMERVYL-GQEFTA 369

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH   ++   L  +R  T GRII V GCGGDRD  KRP+MG+ A+  +D+ IVTDD
Sbjct: 370 VVDYAHKPAAVAQGLDALRARTEGRIITVLGCGGDRDTAKRPMMGEAAVRRSDLLIVTDD 429

Query: 419 NPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSEDP  IRA ++ G            +E  +R EAI  A+ +    D++++AGKGHE
Sbjct: 430 NPRSEDPAAIRAAMLAGARAVGPAAGGEVLEIADRREAIAHAVSLAGPGDIVLIAGKGHE 489

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T      G      D D +   +
Sbjct: 490 TGQE-AQGVVHPFSDRDELEAAI 511


>gi|284991689|ref|YP_003410243.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064934|gb|ADB75872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 523

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 156/484 (32%), Positives = 234/484 (48%), Gaps = 29/484 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+  S  +  G ++ A+ G +  G  +   A A+GA A++       +       + 
Sbjct: 39  VTGVTLASGEVGPGDLYAALPGARTHGARYAADAAARGAAAVLTDPTGREE----AAATG 94

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+ VVD+ R  L   A+R+YG+    +  + +TGT+GK++ +  V+     +G  +  +
Sbjct: 95  LPVCVVDDPRGLLGAVAARVYGEPARRLQVIGITGTNGKTTTSYLVEAGLAAAGRGTGLV 154

Query: 148 GPT----------STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G             T +     +  TTP    L   L+ ++  GV  V +E SSH L   
Sbjct: 155 GTVETRTRGRAADGTPTVTTLPSVRTTPEAPALHALLARMADSGVQTVVMEVSSHALVLG 214

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ GI   A  FTNLGRDH+D+H   + YF AK RLF+    + +  ++  DD Y + + 
Sbjct: 215 RVGGIPFAAAGFTNLGRDHLDFHTDIEDYFLAKARLFDG---RAAVEVVDVDDPYGRRLA 271

Query: 258 KRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNA 315
               +     +S  G    +       A       T+S  G + +     LPG F V NA
Sbjct: 272 GMLGDRRAVTVSTQGADADWTATGLGPAPGGGTAFTLSGPGGRSWPARVRLPGAFNVANA 331

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           ++A  L  A+G+     L  L +  VVPGR E V    +     VDYAHT +++   L  
Sbjct: 332 VLAVALLDAVGVPVETALTGLAE-TVVPGRMEPVDA-GQPFVAVVDYAHTPDAVATALAA 389

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R  T GR++ V GCGGDRD GKR  MG+ A   +D+ +VTDDNPRSEDP  IRA ++ G
Sbjct: 390 LRAATPGRVLTVLGCGGDRDPGKRAAMGEAAARGSDLLVVTDDNPRSEDPAAIRAAMLAG 449

Query: 436 IPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +P       +E G+R  AI  A+      D ++VAGKGHET   V  G      D  ++R
Sbjct: 450 VPADRRGDVVEVGDRRAAIAEAVARARPGDAVLVAGKGHETGQDVA-GTLHPFDDRAVLR 508

Query: 491 EILG 494
           E L 
Sbjct: 509 EALA 512


>gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
 gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
          Length = 474

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 135/498 (27%), Positives = 219/498 (43%), Gaps = 40/498 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG---NKE---DGHLFIPQAIAQG 67
           ++    +F   +    +  ++ DSR +Q G+IFVAI G         +GH FIP+AIA+G
Sbjct: 1   MLRLDQLFGPSYPTTPVTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV +    L           P L V + R  L+  A+  +G HP  +L + G +G  
Sbjct: 61  AVGIVGTQDLELP---------VPYLKVADPRSALADLAAAFWG-HPAKMLQLVGITGTK 110

Query: 128 SVAS---FVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQG 181
              +       + Q +   + +I           +      TTP    + + L+     G
Sbjct: 111 GKTTVTVLAHHLLQFAAPPAGRISTVGVRVGEEEYFLSGHFTTPEAPQVQEMLARFVKAG 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +E SSH L   R+ G++   G +TNL  DH+D+H + + YF AK    + LL + 
Sbjct: 171 CKQAVLEVSSHALALERVRGLEYEVGVWTNLSEDHLDFHGSMENYFAAK----QTLLRRS 226

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              ++  +D Y  ++       G    S G  G +   + +          +      F 
Sbjct: 227 RFGVLNREDPYYPQL------PGLTHWSYGMGGDWQ-AENLLETAGGLHFRVRSPLGAFK 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+ G+F   NAL A      +G+    +   LE    VPGR + V       R+ VD
Sbjct: 280 VSLPMIGKFNALNALAAMAAAARLGVKIPELQAGLEFFPGVPGRMQIVQAT--PFRVIVD 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +AHT +S+   L+ +R  T GR+++V G  G+R   +R  +G+ A +LAD+A+ T+++ R
Sbjct: 338 FAHTESSVRAALETLRPTTRGRLVIVVGAAGERGAERRTGIGRAAGELADLAVFTEEDHR 397

Query: 422 SEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           SE+ E I   +          +    +R EAIR AI      D L++AGKGHE      +
Sbjct: 398 SENLEAILQTMAESAKAVGGQYALIPDRREAIRWAIAHAQPGDTLLLAGKGHERTLERGS 457

Query: 478 GEKKMSVDCDIIREILGL 495
                  + +  R+ LGL
Sbjct: 458 EVLPW-NEVEEARKALGL 474


>gi|256379770|ref|YP_003103430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
 gi|255924073|gb|ACU39584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
          Length = 527

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 144/479 (30%), Positives = 226/479 (47%), Gaps = 25/479 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+  ++H+  G +F A+ G +  G  F  +A+ +GA A++     +    S     +
Sbjct: 58  VTGVTLRAQHVLPGDLFAALPGARAHGADFAAEAVRRGAVAVLTDEDGA----SRPELRD 113

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSFQI 147
            P+LV  + R  L   ++R+YG+  + +     T           ++   +  G  +  +
Sbjct: 114 VPVLVHRDPRAALGALSARVYGEPAQRVALWGVTGTSGKTTTSYMIESCLRAEGRVTGLV 173

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T I+    D+  TTP    L   L+ +  +GV    +E SSH L   R+ G     
Sbjct: 174 GTVETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEVSSHALRLGRVGGAGFAV 233

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G+FTNL +DH+D+H   + YF AK  LF+    +E   ++  D  + + ++K        
Sbjct: 234 GAFTNLSQDHLDFHPDMEDYFQAKAELFDGRARRE---VVCVDGEWGRRLVKPGTVTVSA 290

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              VG         +V A   +       +G +      LPG+F V NAL+A G   A G
Sbjct: 291 TAPVGGATWTASGVRVSATGEQTFTAHGPDGLELAVALRLPGDFNVANALLAIGCLHASG 350

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + +  ++  L ++  VPGR + V    +     VDY+H   ++ + L  +R   +GR+I 
Sbjct: 351 VGAEAIVRGLAEVQ-VPGRMQRVDV-GQDFTAVVDYSHKPAAVVLALDAVRARATGRVIT 408

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PG 438
           V GCGGDRD  KRP+MG  A   +++ +VTDDNPRSEDP  IRA ++ G           
Sbjct: 409 VLGCGGDRDTAKRPLMGAEAARRSEVLVVTDDNPRSEDPAAIRAAVLAGALEVPEAERGE 468

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD----IIREIL 493
            +E G+R  AI  A+ +    DV+VVAGKGHET   V  G      D D     I+E L
Sbjct: 469 VVEIGDRGAAIAHAVSLAVAGDVVVVAGKGHETGQEVA-GVVHPFSDVDALTGAIQEAL 526


>gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus
           sativus]
          Length = 871

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 130/518 (25%), Positives = 238/518 (45%), Gaps = 48/518 (9%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF--IPQAIA 65
             EL+++  + P+      + +I  +  DSR + AG +FV       DG     + +A  
Sbjct: 343 LAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCC-----DGGDDSVLSEADK 397

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A+V S    ++D          +++V++T   L+  AS  Y +HP   +AV G +G
Sbjct: 398 RGAVAVVASKEIDIED----TLGCRALVIVEDTEAVLAALASSFY-RHPSKDMAVIGVTG 452

Query: 126 KSSVA---SFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            +        ++ + +  G+ +                D+  T+P  + +   ++ +   
Sbjct: 453 TNGKTTTTYLIKSLYEAMGVRTGMFSSVSCYVHGDNKMDSTTTSPDAVLVQSMMAKMLHN 512

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239
           G   + +EAS   L   + D +      FTNL R+   +  T + Y +A+ +LF  ++ P
Sbjct: 513 GTEALVMEASPQELASGKCDEVDFDIAVFTNLAREDSGFRGTDEEYRDAEAKLFARMVDP 572

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEG 297
           +    ++  DD  +   +++  N    V++   +     +H  K      + QV ++   
Sbjct: 573 ERHRKVVNIDDPNAAFFVQQG-NPDVPVVTFAMENTKADVHPLKFELSLFETQVLLNTPQ 631

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +      G 
Sbjct: 632 GILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG- 690

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VD+A+T + L  +L ++R +   RII V GC G+ ++GKRP+M KIA + +D+ ++T 
Sbjct: 691 VIVDHANTPDGLSRLLDSVRELKPRRIITVIGCAGETERGKRPVMTKIATEKSDVTMLTS 750

Query: 418 DNPRSEDPEKIRAEIIHGI----PGFIEKGN------------------RIEAIRTAIEM 455
           DNP +EDP  I  +++ GI      +++ G                   R  A+R A+ M
Sbjct: 751 DNPGNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAM 810

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 811 GEEGDMVVVAGKGHEAYQ-LEGDKKEFYDDREECREAL 847


>gi|331696615|ref|YP_004332854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326951304|gb|AEA25001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 501

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 231/476 (48%), Gaps = 17/476 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   +  +  ++ G +F A+ G++  G  F   A+A GA AI+   A +     A  +
Sbjct: 25  RPVTGATLRASDVRPGDLFAALPGSRAHGADFTAAALAAGAVAILTDPAGAA--REAVAQ 82

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P+LV +  R+ L   A+R+YG     +  + VTGTSGK++V   ++      G ++ 
Sbjct: 83  AAVPVLVHEAPRRVLGDLAARIYGDPTARLDVVGVTGTSGKTTVGHMLEAGLAAGGRATG 142

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G  +T I      +  TTP    L    + ++ +GVT V++E SSH L   R+ G + 
Sbjct: 143 LLGTVTTRIRGAEAPSLFTTPESPDLQALFAVMAERGVTDVAMEVSSHALALDRVAGTRF 202

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNA 263
              +FTNL +DH+D+H+    YF AK  LF+          ++  DD + + +  R H  
Sbjct: 203 SVAAFTNLSQDHLDFHRDMDDYFEAKALLFDPSRQGAARRRVVCVDDEWGRRLADR-HPD 261

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V + G    +            Q    +  G        LPG + V NALVA     
Sbjct: 262 AVTVATTG-PADWTAESVHQDDDGTQSFVAARPGGTVPVRLRLPGRYNVANALVALACLD 320

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+ + +    L +L  VPGR + V    +   + VDYAH   ++  +L  +R    GR
Sbjct: 321 AAGVPAEVAAPRLAEL-AVPGRMQRVDA-GQDFLVVVDYAHKPAAVGALLAALRGQVGGR 378

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----- 438
           I+ V GCGGDRD+GKRP+MG IA   +D+ +VTDDNPR+EDP  IR  +  G        
Sbjct: 379 IVTVLGCGGDRDRGKRPLMGAIAAAGSDLLVVTDDNPRTEDPAAIRRAVREGAEAEPRRG 438

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +E G+R  AI  A+      D +VVAGKGHE    + +G K    D D +R  L
Sbjct: 439 EIVEIGDRRAAIAAAVAAARPGDAVVVAGKGHEKGQEI-DGVKHPFDDVDEVRAAL 493


>gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica
           CNB-440]
 gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinispora tropica CNB-440]
          Length = 514

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 237/503 (47%), Gaps = 22/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +L  +   E             E  +  V+  S+ ++ G ++ A+ G +  G  F+
Sbjct: 13  IRLGNLAARLAAESGADAVDLRPGPTEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFV 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A   GA A++     +     AT   + P+LVV + R  L   AS +YG       ++
Sbjct: 73  SAAARAGAVAVLTDPDGAA----ATAEVDLPMLVVPDPRAVLGDLASVVYGDPTAGLTVI 128

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S A  V+   + +G ++  IG   T +     D+  TTP    L   L+  
Sbjct: 129 GVTGTAGKTSTAYLVESGLRAAGHTTGLIGTVETRLGDLVVDSVRTTPEATDLHAMLAAA 188

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GVT V +E SSH L   R+ G++   G +TN G DH+D+H     YF AK +LF+  
Sbjct: 189 RERGVTAVVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHADSVDYFAAKAKLFDG- 247

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VE 296
             +    ++  DD     ++     A     + G         +       Q+ T+   +
Sbjct: 248 --RCEVEVLNHDDP---ALLPLHRPATVTYSAAGDGAATWWADEAGGEGYAQRFTLHGPD 302

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G        LPG   V NAL+A  + +A G+     +  +     VPGR E V +     
Sbjct: 303 GLTLPAGVALPGRHNVANALLAVAVLVAAGVAPRTAVAGVADCGGVPGRLELVPSPG-PV 361

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           R  VDYAH ++++   L  +R  ++GR+I + G GGDRD+GKRP+MG  A + AD+ +VT
Sbjct: 362 RGVVDYAHKTDAIVAALAALREFSTGRLICLLGAGGDRDRGKRPLMGVAAAEGADVVLVT 421

Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DDNPR+EDP  IRAE++ G+         +E   R  AI  A+++    DV+ + GKGHE
Sbjct: 422 DDNPRTEDPADIRAEVLAGVRRADTEAQVLEVPGRRAAIAEAVQLAAPGDVVALLGKGHE 481

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V  G+     D   +   L
Sbjct: 482 QGQEV-GGQVHPFDDRTELAAAL 503


>gi|331266032|ref|YP_004325662.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
 gi|326682704|emb|CBZ00321.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
          Length = 481

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 137/500 (27%), Positives = 224/500 (44%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++   +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKERTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      +T+       +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      L
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K S A++   D     V+K              +  F   +    I N +  + S  G
Sbjct: 232 LMKNSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGILLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N++ D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIAEEISSYINHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  I    L
Sbjct: 462 IVQGKKEDYPGDAAIAECYL 481


>gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
 gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
          Length = 975

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 153/472 (32%), Positives = 223/472 (47%), Gaps = 19/472 (4%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           ++DSR +Q G +FVA  G   D   F+ QA+     A   ++    +       ++  IL
Sbjct: 27  TADSRSLQPGEVFVAWPGAARDPRQFVAQAL----AAGAAAALVEAEGAQYFGFTDPRIL 82

Query: 94  VVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            VD  +      A+  YG   E   +LAVTGT+GK+S A +  Q    +G     IG   
Sbjct: 83  AVDGLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLG 142

Query: 152 -TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  Q    TTP P+ L   L+ L  QG    ++EASS GLD+HRL G  + A +FT
Sbjct: 143 AGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAFT 202

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLS 269
           NL +DH+DYH    AY  AK  LF  + P    A++  DD Y+  V +    + G +V +
Sbjct: 203 NLTQDHLDYHGDMAAYARAKRALF--VWPGLQHAVLDIDDPYAASVLLADCRSRGQQVQT 260

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                K     + V      Q++T+           P+ G F + N LV A L    G+D
Sbjct: 261 TALIAKADWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLHTTGLD 320

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRII 385
            A +   L  +  VPGR + +G       +  DYAHT ++L   L+ +R +T    G++ 
Sbjct: 321 DAAIAAALRTVRAVPGRMQMLGGIGAPLAVI-DYAHTPDALYKALQALRPVTAKRKGKLW 379

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFG GGDRD  KRP+M + A   AD  ++T DNPRSE P  I  +++ G+      +  
Sbjct: 380 CVFGAGGDRDARKRPLMAQAAEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQPAQALLI 439

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +R  AI   +      DV+++AGKGHE    +  G K+   D    R  L 
Sbjct: 440 EDRAAAIAQTLSHAAVHDVVLIAGKGHENTQEIA-GHKQAFSDAFHARMALA 490



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 135/401 (33%), Gaps = 47/401 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ---------AIAQGAEAIVVSSAY 77
           +  ++ + +DSR +  G +FVA+ G + D H F+PQ            QG  A       
Sbjct: 517 DVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAAGARALLAEQGVAAC------ 570

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                        P +   +T +   L A     +    ++AVTG++GK++V   +  I 
Sbjct: 571 -----------GLPGIEAPDTLRAFGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASIL 619

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                   Q    +T  +F  +  L         +  + +   G+ H    A    L + 
Sbjct: 620 AAW---QGQDRRLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLAE- 675

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                        N  R+H ++  + +A  +    +   L P+   A+  ADDA +   +
Sbjct: 676 ------PTVALVNNAQREHQEFMHSVEAVAHENGSVLAAL-PQTGVAVFPADDAQTAIWV 728

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVY 313
            +A        ++    +     +V      +Q    + +       +    L G     
Sbjct: 729 AQAAGRRVLRFALREGAEAGVEAEVSGHAFYRQGQLRLQLHTPTGHAEVGLQLLGRHNAR 788

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF---EFVGTNSRGGRIYVD-YAHTSNSL 369
           NAL A    +A G     +   LE    V GR         + R   +  D Y    +S+
Sbjct: 789 NALAATAAALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADDRTLLLIDDSYNANPDSV 848

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
              +  +  +    ++++   G   D G      +G  A  
Sbjct: 849 RAAIDVLAELPGRSLLLLGDMGEVGDNGPAFHAEVGTYAAQ 889


>gi|62261015|gb|AAX77953.1| unknown protein [synthetic construct]
          Length = 477

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 132/454 (29%), Positives = 228/454 (50%), Gaps = 23/454 (5%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +FVA+ G   DG+ +I   +A+G   ++          S        +  + N ++ LS 
Sbjct: 27  VFVALKGLSTDGNKYIDSVLAKGVSLVLTD--------SHEFEDQKRVFYIQNLKEKLST 78

Query: 105 FASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRL 162
            A   Y  + P+NI+ +TGT+GK+S++S++ Q    S   +  +G     I    +++  
Sbjct: 79  LAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTH 138

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT   + L K +SY   +   ++ +E SSH LDQ R++G+      F+NL  DH+DYH+T
Sbjct: 139 TTLDILSLYKTISY--YKNYQNLVMEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKT 196

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              YF AK +LF+    +   AII  DD Y + +           +S+  +   +++K  
Sbjct: 197 MDNYFEAKAKLFQ--FKRLKKAIINIDDEYGQRLCNMTQ-VPVITVSLKSEYADVYIKPK 253

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                K +  +   G+   ++   L G+F + N  ++      + +D   +L+ L  +  
Sbjct: 254 SIEGIKTKFEMFFNGRFVGEYTTKLIGDFNLMNLGLSFASLDGV-LDWDCILD-LGNIKP 311

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GR E +       +I +DYAHT ++LE  L+ + +     +  +FGCGG+RD  KRPI
Sbjct: 312 VKGRMEVIEL-DNDIKIVIDYAHTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPI 370

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNK 458
           M +IA + A   ++T+DN R E  E I ++I  G       I   +R +AIR +IE  N+
Sbjct: 371 MAQIAEEYASKIVITEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQ 430

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            D++++A KGHE   +  NG K+   + +II+ +
Sbjct: 431 GDIILLASKGHECY-LDKNGAKEYFDEREIIKNM 463


>gi|167586014|ref|ZP_02378402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ubonensis Bu]
          Length = 512

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 143/474 (30%), Positives = 219/474 (46%), Gaps = 27/474 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +F+A   +  D   FI  A+A+GA A++          +A +     
Sbjct: 30  QLHADTRSLEAGDVFLAYAVDGADNRAFIADAVARGAAAVLYQPDGLAAAPAAPVALAV- 88

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                   +     AS  YG   +++ AV  TGT+GK+S   ++             IG 
Sbjct: 89  ----PALNELAGDIASGWYGDPSDSLFAVGVTGTNGKTSCTQWIAAALTALDRPCALIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T  AY  AK +LF         A++  DDA    ++        R +
Sbjct: 205 FTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLRAAVVNRDDAAGSRLLASLSG-QVRTI 261

Query: 269 SVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           + G          + +    V A        +     D D      G F V N L   G 
Sbjct: 262 AYGIGDAPAAGADRELSAHDVRATATGTAFRLRSSWGDTDVEVGTLGTFNVSNLLAVLGT 321

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +A  +     L  + +L  V GR + +G    +    + +DYAHT ++LE  L  +R I
Sbjct: 322 LLAADVPFDAALAEVARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPI 381

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  +I+ G+
Sbjct: 382 AVARGGALVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQIVAGM 441

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                     +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 TAPDNARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|93007201|ref|YP_581638.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychrobacter
           cryohalolentis K5]
 gi|92394879|gb|ABE76154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter cryohalolentis K5]
          Length = 570

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 146/510 (28%), Positives = 234/510 (45%), Gaps = 47/510 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVS--------- 74
                +   DSR + +  +FV +  +    +     + QA    A  I+           
Sbjct: 59  NIPFQQFCLDSRQLASNDVFVLLKSHTPNCQKSRDHLYQAANN-AAFILSEIDPRALLNT 117

Query: 75  ------------SAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHP---ENIL 118
                       +  + +     +    P+L V N R FL  L  +RL  + P     ++
Sbjct: 118 TSVSNHADITLPNDSTAKAQQQLVALPCPVLHVPNIRDFLGTLIQARLQYQQPVTLPTVI 177

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++  V Q+ Q +G+SS  +G               TT   + + + L  +
Sbjct: 178 AVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRFGALVQASHTTGDVLAVQQFLYQM 237

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-E 236
             +G   +++EASSHGLDQ RL G+ +    +TNL RDH+DYH     Y  AK +LF+  
Sbjct: 238 GKEGAELLALEASSHGLDQQRLQGMPVSVAIYTNLSRDHLDYHADMAEYAAAKAKLFDKA 297

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTI 293
             P  + AII  DD +++ ++  AH +   V +               +       ++++
Sbjct: 298 HFPDLTHAIINIDDEHAQIMLDTAHASNLTVWTYSLDSLKTATFVAANITPSLRGVEISL 357

Query: 294 SVEGKD-----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +  D      D + PL G F V N L A    +A+GI    +   + +L    GR + 
Sbjct: 358 RTDFDDGTMNHLDIVSPLLGRFNVANLLAAMAAAVALGISLEHIAAVVPQLQGAVGRMQR 417

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +N   G   VDYAHT ++L  +L +++T   G++  VFGCGGDRD GKRP+M +  L 
Sbjct: 418 VPSND--GCFIVDYAHTPDALSQVLASLKTHCKGQLWAVFGCGGDRDAGKRPLMAQAGLA 475

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            AD  ++T DNPR+EDP  I  ++  G+          +  R  AI  A+      D++V
Sbjct: 476 GADKVVLTADNPRTEDPNAILQDMQVGMSTEQYQRTHIEPARQAAIEYAVNQAAADDIVV 535

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET   + N  +    D  I++  L
Sbjct: 536 IAGKGHETYQEI-NHVRYDFDDSVILQNAL 564


>gi|27904704|ref|NP_777830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29427601|sp|P59419|MURE_BUCBP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27904101|gb|AAO26935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 508

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 130/477 (27%), Positives = 224/477 (46%), Gaps = 30/477 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ-------AIAQGAEAIVVSSAYSLQD 81
            I+ + SDSR ++ G++F  +          I +       AI  GA+ I+  +    ++
Sbjct: 25  TISGIQSDSRLVKPGYLFCVLKKKN------INETNKHMIHAIKNGAKIILYDTKQKFKN 78

Query: 82  FS-ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +   I ++ PI+      K L  +     + ++   ++ +TGT+GKS+    V Q    
Sbjct: 79  GTLKKIINHVPIIYFFKLSKNLPQILKKYYHFENNFTLIGITGTNGKSTTTHIVSQWANL 138

Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             +    +G     I++  +    TT S   + + L ++  Q +   ++E SSHG+ QHR
Sbjct: 139 LNVKIGIMGTLGHGINNNLKKTDNTTESSANIHQFLYHMLKQNIKTFAIEISSHGIVQHR 198

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +       TN+  +H+DYH+T   Y NAK   F       +  II ADD  +K  +K
Sbjct: 199 IEQLPFKIAILTNITPEHLDYHRTMDNYINAKKAFF--FKYNINTLIINADDLIAKTWIK 256

Query: 259 RAHNAGCRVLSVGYQG-------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + ++     ++   Q        K+IH  K+    N   +  +           L G F 
Sbjct: 257 KLNHKNVITITTKDQNFNSISPKKWIHANKIIQKQNCTNIHFNSSWGHGILNSTLIGHFN 316

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L+A    + +      +++  + +  + GR E +   ++  ++ +DYAH +N L+ 
Sbjct: 317 VINILLALATLLELNYPITDLVKVCKYIKTISGRMEHIHIVNK-PKVIIDYAHNTNGLKN 375

Query: 372 ILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +L  ++      +I  +FGCGGDRD+ KRP MG IA  ++D  I+T+DNPR+E P KI  
Sbjct: 376 LLSTLKEIFNKKKIWCIFGCGGDRDKTKRPYMGSIAEKMSDQVILTNDNPRNEHPLKIIK 435

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
            I+ G           NR  AI+ A+   +K+D++VVAGKGHE   I+ N     S 
Sbjct: 436 NILSGCKFKNKIRIIPNREHAIKFAVNNADKEDIIVVAGKGHEKYQIINNKYYHFSD 492


>gi|121998875|ref|YP_001003662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
 gi|121590280|gb|ABM62860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
          Length = 503

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 167/476 (35%), Positives = 241/476 (50%), Gaps = 18/476 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SATI 86
           I  ++ D+R ++ G +F+A+ G+++ G  ++P A+  GA A+V      +      +AT 
Sbjct: 28  IQGLTPDTRRLEPGAVFLALPGSRDHGLAYVPAALQAGAAAVVWDPQDEVDPGAARTATE 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +S  P++ V   R+ L   A RLYG       ++AVTGT GK+SV+ F+ Q+        
Sbjct: 88  QSGVPMVGVPGLRRHLGAIAGRLYGDPSRGMEVIAVTGTDGKTSVSHFIAQLLS---GPE 144

Query: 145 FQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              G   T+     D+       TP    L KAL+   + G T V++EASSH L+Q RL 
Sbjct: 145 APWGVVGTLGHGLVDDLRPGVLTTPDAAALQKALAECRAAGATGVAMEASSHALEQGRLA 204

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G  +     T+LGRDH+DYH + +AY +AK RLFE   P     ++  DDA  + +  RA
Sbjct: 205 GTAVDLAVLTHLGRDHLDYHGSVEAYADAKSRLFE--FPSLRAQVLNLDDALGRRLHDRA 262

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     S       +  + V    +  Q+T+ V G       PL G F V N L A  
Sbjct: 263 AGA-AFTYSAAGAAADLAAEAVIPGADGVQLTLCVGGTRHSVRLPLFGHFNVANVLAAVA 321

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A+G     VL  L  L  VPGR E    +     + VDYAHT  +LE  L  +R  T
Sbjct: 322 AALALGRPMDGVLARLPTLRPVPGRMEQFHADG-SPLVVVDYAHTPGALEQALTALRAHT 380

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PEKIRAEIIHGIPGF 439
           +GR+ VVFGCGG+RD GKRP+MG++A  LAD  ++TDDNPR ED      A       G 
Sbjct: 381 TGRLCVVFGCGGERDTGKRPLMGEVAARLADRVLITDDNPRGEDAAVIRAAVAAGAGEGA 440

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                R  AI  AI      DV+++AGKGHET   + +G++    D + +  +L +
Sbjct: 441 EVVAGRGVAIGGAIAWGAPGDVVLIAGKGHETEQEI-DGQRFPFSDREEVARLLSV 495


>gi|170700177|ref|ZP_02891195.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
 gi|170134909|gb|EDT03219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
          Length = 512

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 144/477 (30%), Positives = 223/477 (46%), Gaps = 33/477 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ +D+R ++AG +F+   G   DG     FI  A+A+GA A++          +  +  
Sbjct: 30  QLHADTRSLRAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVAL 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQ 146
                      +     AS  YG   +++LA+  TGT+GK+S   ++             
Sbjct: 87  AV-----PALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIAAALTALHQPCAV 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G    
Sbjct: 142 IGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFD 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH T  AY  AK +LF         A++  DDA  + ++++      
Sbjct: 202 IAVFTNLTQDHLDYHGTFDAYEAAKAKLFA--WRGLRAAVVNRDDAAGRRLLEKLAGR-V 258

Query: 266 RVLSVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R ++ G          + +    V A        +S    D D      G F V N L  
Sbjct: 259 RTIAYGIGDAQTPDADRELVALDVRATATGTAFRLSSSWGDADVEVGTLGAFNVSNLLAV 318

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNI 376
            G  +A  +     +  + +L  V GR + +G    +    + +DYAHT ++LE  L  +
Sbjct: 319 LGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDAL 378

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I
Sbjct: 379 RPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVI 438

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G+          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 439 AGMTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|171316202|ref|ZP_02905425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
 gi|171098616|gb|EDT43413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
          Length = 512

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 145/477 (30%), Positives = 223/477 (46%), Gaps = 33/477 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ +D+R +QAG +F+   G   DG     FI  A+A GA A++          +  +  
Sbjct: 30  QLHADTRSLQAGDVFL---GYAVDGADNRAFIADAVAGGAAAVLYQPEGLAAAPAMPVA- 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQ 146
               L V    +     AS  YG   +++LA+  TGT+GK+S   ++             
Sbjct: 86  ----LAVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIAAALTALHQPCAV 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   + +         TTP    L ++L+ L+  G   V++E SSH L Q R++G    
Sbjct: 142 IGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLNEAGAKAVAMEVSSHALHQGRVNGTAFD 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH+T  AY  AK +LF         A++  DDA    ++++      
Sbjct: 202 IAVFTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLRAAVVNRDDAAGCRLLEKLAGR-V 258

Query: 266 RVLSVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R ++ G          + +    V A        +     D        G F V N L  
Sbjct: 259 RTIAYGIGDAQGPDADRELVALDVRATATGTAFRLRSSWGDAHVEVGTLGAFNVSNLLAV 318

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNI 376
            G  +A  +     +  + +L  V GR + +G    +    + +DYAHT ++LE  L  +
Sbjct: 319 LGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDAL 378

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I
Sbjct: 379 RPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVI 438

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G+          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 439 AGMTAPDHARRIEDRASAILQAVRGAVREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|257056722|ref|YP_003134554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586594|gb|ACU97727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 524

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 167/510 (32%), Positives = 252/510 (49%), Gaps = 32/510 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+ +    L+      P      ++   +  ++H+  G +F A+ G +  G  F   
Sbjct: 28  LTTLVARADARLVAD----PAVAESVRVTGATLRAQHVLPGDLFAALPGARAHGADFTAD 83

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+A GA A++     + +   A   S  P+L+  + R  L   A+ +YG+    +  L +
Sbjct: 84  AVAGGAVAVLTDEEGASR--PAVRESGLPVLIHPDPRGVLGSVAAWIYGEPSLTLSVLGI 141

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++ + FV+   + +G  +  IG   T I S    +  TTP    L    + +  
Sbjct: 142 TGTSGKTTTSYFVESGLRAAGYHTGLIGTVETRIGSERLASAFTTPEAPDLQALFADMVE 201

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV++E SSH L   R++G +   G+FTNL +DH+D+H+  + YF+AK  LF+    
Sbjct: 202 RGVTHVAMEVSSHALALGRVNGTRFTVGAFTNLSQDHLDFHRDMEDYFSAKSLLFDG--- 258

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV-EG 297
           + +  I+  D A+ + ++         V +            +       Q  T+   +G
Sbjct: 259 RSTHEIVVVDSAWGQALV---TPRTVTVSTEPDSDAGWRATDITLTPGGEQSFTLHAPDG 315

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +    + PLPGEF V NA++AA +   +G+D   VLE L  +  VPGR E V    +   
Sbjct: 316 RKAQAVLPLPGEFNVANAVLAAAILDTVGVDLDAVLEGLATVE-VPGRMERVYL-GQPFT 373

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   ++   L+ +R  T GR+I V G GGDRD  KRP+MG+ A   +D+ IVTD
Sbjct: 374 AVVDYAHKPAAVTQALRALRARTEGRLITVIGSGGDRDTAKRPMMGEAAARGSDLVIVTD 433

Query: 418 DNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DNPRSEDP  IR  I+ G            +E G+R EAI  A+E     DV+ VAGKGH
Sbjct: 434 DNPRSEDPAAIREAILAGARAVGPAEGCEVLEIGDRREAIAAAVERAEAGDVVFVAGKGH 493

Query: 470 ETVHIVTNGEKKMSVDCDI----IREILGL 495
           E+   V  G      D D     IRE  G+
Sbjct: 494 ESGQEVA-GVVHPFSDRDELEAAIRERFGV 522


>gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 491

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 137/485 (28%), Positives = 215/485 (44%), Gaps = 26/485 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  E  +  V+ ++   + G +FVA+ G + DGH FI QA  +GA A++       +   
Sbjct: 17  QTPEADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVL------GEGLP 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
             +++  P L V + R  L+  A+ L+G       ++ VTGT GK++ +   + + + +G
Sbjct: 71  TGVQTTLPYLQVPDARAALADLAAELHGHPSRDLKVVGVTGTDGKTTTSWLTRHLLRAAG 130

Query: 142 LSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           L +  +                   TTP    L   L  L   G     +EASSH L  H
Sbjct: 131 LPTGLLSTAGYELPDGKLRQFPAHFTTPEAPQLQSILRELLQAGAQAAVLEASSHALALH 190

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ G+   A  +T+L R+H+D+H + + YF  K RL E        A++ ADD +++++ 
Sbjct: 191 RVRGVAWDAAIWTHLTREHLDFHGSVEGYFADKRRLIEA----APFAVLNADDPWTEQL- 245

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            R         S           KV          +     +F    P+ G F V NAL 
Sbjct: 246 -RGVAPQEVTYSAEGGAADWQADKVQQSGRGLSFRVHSPLGEFAAELPMIGAFNVANALA 304

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNI 376
           A      +G  +  +   L     VPGR + V G      R+ VD+AHT  SLE  L+ +
Sbjct: 305 AMAAAAHLGATAEQLQAGLASFGGVPGRMQLVRGPAGPQPRVIVDFAHTPPSLEKALQTL 364

Query: 377 RTITSGRIIVVF-GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           R+ T G++ VV    GG+RD  KR  +G++A   AD AI T+++ R    + I A +  G
Sbjct: 365 RSTTGGQLWVVIGSAGGNRDPLKRAPLGEVAGRCADQAIFTEEDHRETPLQDILAAMERG 424

Query: 436 I-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                   F    +R EAIR A+      D +++AGKG E   +  + E     +     
Sbjct: 425 AREGGHSNFRSIPDRQEAIRYAVTQAQPGDTVLLAGKGPEDT-LERDTETVPWNETREAE 483

Query: 491 EILGL 495
           E L L
Sbjct: 484 EALAL 488


>gi|227543129|ref|ZP_03973178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181117|gb|EEI62089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 507

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 153/485 (31%), Positives = 229/485 (47%), Gaps = 24/485 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +++ ++ +    +   +F A+ G +  G  F   +    A AIV        +   T
Sbjct: 23  PDLEVSHIAINGADARPDGLFAAVAGTRSHGAKFAGSSQ---AAAIVTDKPGY--EILKT 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
                P++V D+ R  L   ++ + G       ++ +TGTSGK++ +  ++     +G +
Sbjct: 78  AGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTSGKTTTSYMMEAGLAAAGAT 137

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG T T I+       LTTP    L +    +   GVTHV +E SSH +   R+ G+
Sbjct: 138 VGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVTHVVMEVSSHAIALGRVGGV 197

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261
                 FTNL +DH+D+H T + YF+ K +LF    P +   +II  DD +  ++ + A 
Sbjct: 198 DFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAKKSIICVDDKWGVDLTRLAG 257

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V + G    F+            Q T++ +GK       +PG F V NA +A   
Sbjct: 258 PAATTVSTKGAPANFMATDIETEPDGTSQFTVAYKGKKQRVTLHIPGVFNVANASLAIAA 317

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                +D    +  L  +  VPGR E +  N +G    VDYAH   +LE  +K +R    
Sbjct: 318 AAFTDLDVRTFIAGLANIQ-VPGRMEKID-NDKGVLAVVDYAHKPAALEAAIKAVRDEVE 375

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR+I VFG GGDRD GKRPIMG  A+  AD+ I+TDDNPRSEDP  IR  I  G   F+ 
Sbjct: 376 GRVIAVFGAGGDRDHGKRPIMGSAAVAGADVVIITDDNPRSEDPATIRKAIEDGAKEFVV 435

Query: 442 ------------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                        G+R +AI  A+      D ++VAGKGHE   +V  GE +   D   +
Sbjct: 436 SHPSRRSVEICNVGDRGQAIALAVNKSQAGDAIIVAGKGHEQGQLV-GGEMRDFDDRIEL 494

Query: 490 REILG 494
           R  L 
Sbjct: 495 RRALA 499


>gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 478

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 134/456 (29%), Positives = 224/456 (49%), Gaps = 18/456 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +N+  ++S  I+   +FV   G   DGH +  QA+ +GA A++ +    +         
Sbjct: 17  PVNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAVIANRPLDI--------- 67

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           + P+++ D+  + L+L  +     H +   + VTGT+GK++V+  + QI  ++  S++  
Sbjct: 68  DIPVIMTDSYYQSLALVKAYYGHPHQKIKHIGVTGTNGKTTVSHCLNQILNQTTTSAYIG 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              + ++        TTP  + L      ++ +      +E SSH L Q R   + L  G
Sbjct: 128 TLGAKLAGSDYPLENTTPDGVTLLNLFHQMAQRETEFNLMELSSHALAQDRAGFVSLQIG 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+GRDH+DYH+T+ AY  AK++L + + P    A+I  DD ++   ++RA      V
Sbjct: 188 IITNIGRDHLDYHKTKDAYVQAKLQLIDRIAP-NGTAVINLDDPHAAAAIERASGR-VNV 245

Query: 268 LSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           ++ G +    H     V          + ++G+ FD    +P  F V NAL  A   +++
Sbjct: 246 VTFGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNSQMPFTFNVENALAIAASLLSL 305

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G  S+ +   L+ +    GR +F+  N  G    VDYAH ++ L  +L+++R  T GR+I
Sbjct: 306 GWQSSRIAAALQTIVAPDGRAQFLSLN-NGATGLVDYAHNADGLSKLLEDVRPYTKGRLI 364

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKG 443
           VV G  GDR Q    I G +   LAD A+ T DNP   D E I   +   +      E  
Sbjct: 365 VVTGVTGDRIQDASGI-GVLCSQLADTAVFTSDNPMGVDQEDIFRALTSQVSKVPHFEIS 423

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           +R EAI  A ++    D++VV GKG ET   ++NG+
Sbjct: 424 DRAEAIEFAKQLSVAGDLIVVCGKGSETHQYISNGK 459


>gi|94984207|ref|YP_603571.1| UDP-N-acetylmuramyl-tripeptide synthetases [Deinococcus
           geothermalis DSM 11300]
 gi|94554488|gb|ABF44402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Deinococcus geothermalis
           DSM 11300]
          Length = 488

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 136/477 (28%), Positives = 210/477 (44%), Gaps = 30/477 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P+L   LS       + ++  V+  +  ++ G++FVAI G + DGH F+P+  A+GA A
Sbjct: 3   LPDLAAALSTPTPPLPDVEVRGVTHHAAWVEPGFLFVAIRGARFDGHSFLPEVAARGAVA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           ++           A + S  P L V N R  L+  A+ L G       ++ VTGT GK++
Sbjct: 63  VLGE------GLPADVASPLPYLSVPNARAALADAAAALAGHPSRALKVVGVTGTDGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYLAKALSYLSSQG 181
            +   + + + +GL +   G  ST+                TTP    +   L  L   G
Sbjct: 117 TSWLTRHLLRAAGLRT---GLLSTVGYELPDGVLRHFPAHFTTPEAPQVQTTLRALLEAG 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +EASSH L   R+ G+      +T+L  +H+D+H T + YF  K +L E      
Sbjct: 174 GEAAVLEASSHALALDRVRGVDWDVAVWTHLSSEHLDFHGTLENYFADKRKLIER----A 229

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DD ++ ++  R         S   Q      + +          ++    +F 
Sbjct: 230 PFAVLNVDDPWTAQL--RGVAPQETTYSAENQHADWQARHIEERATGLHFQVASPLGEFA 287

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+ G F V NAL        +G     ++E L     VPGR E V   +   R+ VD
Sbjct: 288 AHLPMIGRFNVANALAGMAAAAQLGATVPQLVEGLASFRGVPGRMELVPGGASDPRVIVD 347

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           +AHT  SLE  L  +R  T GR+ V+    GG RD GKR  +G++A  LAD A+ T+++ 
Sbjct: 348 FAHTPPSLEKALTTLRATTGGRLWVLLGSAGGPRDPGKRAPLGEVATRLADHAVFTEEDC 407

Query: 421 RSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           R      I  E+  G        F    +R EAIR  I      D +++AGKG E  
Sbjct: 408 RDTPLWDILREMERGAREAGRNNFTSIEDRREAIRFVIREARPGDTVLLAGKGPEDT 464


>gi|329890508|ref|ZP_08268851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
 gi|328845809|gb|EGF95373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
          Length = 356

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 206/329 (62%), Gaps = 1/329 (0%)

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P     A+ L+ L+ + VTH+++EASSHG+DQ RLDG+ + A  FTNL +DH+DYH T  
Sbjct: 25  PDAAEAARLLAELARKEVTHLALEASSHGIDQRRLDGVAIKAAGFTNLTQDHLDYHGTMD 84

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y  AKMRLFE LLP+   A++ AD          +  AG  V+ VG +G+ + L    A
Sbjct: 85  EYRAAKMRLFEALLPRGRTAVLNADSDAYSAFASASIMAGLGVMGVGERGRDLTLLARRA 144

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               Q++T+ V G+  D L PL G FQ  NALVAAGLCIA G D   V+  LE +    G
Sbjct: 145 TPEGQRLTLDVRGRLHDVLLPLAGAFQASNALVAAGLCIAGGEDPDRVIPALELIQGAQG 204

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + +   +RGG +YVDYAHT + LE +L  +R   +GR+IVVFG GGDRD+ KRP+MG+
Sbjct: 205 RLQRIPGGARGGEVYVDYAHTPDGLETVLNALRPHATGRLIVVFGAGGDRDRAKRPLMGE 264

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           IA  LAD AIVTDDNPRSEDP  IRA++  G P  +E G+R EAIR A+ ++ + DV+V+
Sbjct: 265 IAGRLADTAIVTDDNPRSEDPAAIRAQVRAGCPDSLEIGDRREAIRHAVSLMREGDVVVI 324

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHE   IV  G      D     E L
Sbjct: 325 AGKGHEQGQIV-GGVVHPFDDAAEATEAL 352


>gi|256824045|ref|YP_003148005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
 gi|256687438|gb|ACV05240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
          Length = 528

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 143/486 (29%), Positives = 220/486 (45%), Gaps = 26/486 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--------LQD 81
           I  V+ DSR ++ G  FVA+ G K DG  F   A+A GA  +V    +          Q 
Sbjct: 48  IAAVTHDSRAVEPGAAFVAVSGFKSDGLRFAASALAGGASLVVAEREWPTAADREADPQI 107

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139
                    P++VV N R+ L L A+ + G       +  +TGT+GK++ +  +  +   
Sbjct: 108 GEIEGAGPLPVVVVPNAREALGLLAAAVNGNPSRSMRVHGITGTNGKTTTSYVLYNLLAG 167

Query: 140 -SGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             G     +  T    I    +    TTP    + + L  +   G +   +E SSHGL+ 
Sbjct: 168 ILGKDKVGLSTTVEVIIDGVGRPAMRTTPEAPLVQENLRRMVGAGASDAVLETSSHGLEL 227

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+ G++  +  FTNL RDH+D H   + YF  K +LFE     E P +   DD Y + +
Sbjct: 228 HRVTGVEYASAIFTNLTRDHLDIHGDMETYFQVKRQLFER---TEGPRLANVDDDYGRRL 284

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNA 315
            +    +         +  +  +          Q T+   G  +     PL G++   N 
Sbjct: 285 AREFPGSL--TFGYSPEADYQIVDPTDLTLEGMQFTLRTPGHGELRLEPPLVGDYNALNV 342

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILK 374
             A  + +  G D   V++ ++ L  VPGRF+ +      G    VDYAHT   LEM+L 
Sbjct: 343 AGAVAVALESGHDPLAVVDAVKGLGQVPGRFQRIAEAADHGFMAVVDYAHTEVGLEMVLT 402

Query: 375 NIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
             R    +  GR+I V+G  G+RD  KRP+MG++   +AD+ I+T D+P  EDP  I  E
Sbjct: 403 VARKIADMAGGRLICVYGAAGERDAAKRPLMGEVVSRIADVGIITTDDPYGEDPVTIADE 462

Query: 432 IIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           ++ G          +R EA+  A+ M  + D+L+  GKG E    +  G+     D   I
Sbjct: 463 VMAGADPADTHIVVDRREALLEAVAMARENDLLIACGKGDEPFQHLPEGDVDHH-DPTSI 521

Query: 490 REILGL 495
           RE L L
Sbjct: 522 REGLSL 527


>gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
 gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
          Length = 501

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 147/496 (29%), Positives = 227/496 (45%), Gaps = 22/496 (4%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++N  +      R R   E+ +DSR ++AG  FVA  G   DG  ++ QA+        
Sbjct: 6   QILNNAAEAVAWLRSRVQGELQTDSRKVKAGDAFVAWPGAATDGRAYVGQAL----AQGA 61

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
            +         A   S   I  +   +    L A + +       ++LAVTGT+GK++ A
Sbjct: 62  AAVLVEADGLQAFDLSGDRIASLKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTA 121

Query: 131 SFVQQICQR----SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            ++     +    +      +G     +    +   +TTP P+ L +A    + QG+   
Sbjct: 122 WWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLAAC 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++EASS G+ +HRLDG K+    FTN  +DH+DYH +  AY+ AK +LF+   P    A+
Sbjct: 182 AIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFD--WPGLPTAV 239

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  DDA+   +  R       V SV  QG      K +         T+   G       
Sbjct: 240 VNIDDAHGARLWARLQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNT 299

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G++ V N L        +G+     +     L  VPGR + +    +   + VDYAH
Sbjct: 300 RLVGQYNVSNLLGVLAALRCLGLTLEEAVAACAHLEPVPGRMQQIVKPGQ-PLVAVDYAH 358

Query: 365 TSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           T ++LE  L+ ++       G++  VFGCGGDRD  KRP+MG+ A   AD   VT DNPR
Sbjct: 359 TPDALEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQAAQANADGVFVTSDNPR 418

Query: 422 SEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           SE PE I  +I+ G+        + +R  AI  AI   + +DV+++AGKGHE     T G
Sbjct: 419 SEVPESIIDQILAGMQAGETLHVQADRAAAIAQAIARADARDVVLIAGKGHEDYQE-TKG 477

Query: 479 EKKMSVDCDIIREILG 494
            +    D     + L 
Sbjct: 478 VRHPFSDMAEAHKALA 493


>gi|254246423|ref|ZP_04939744.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871199|gb|EAY62915.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 515

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 224/475 (47%), Gaps = 26/475 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   F+  A+A+GA A++           A      P
Sbjct: 30  QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPDAPA---VP 86

Query: 92  I-LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + L V    +     AS  YG   +++LAV  TGT+GK+S   ++             IG
Sbjct: 87  VALAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIG 146

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T +         TTP    L ++L+ L   G   V++E SSH L Q R +G      
Sbjct: 147 TLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRANGTAFDVA 206

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL +DH+DYH T  AY  AK +LF         A+I  DDA  + ++++      R 
Sbjct: 207 VFTNLTQDHLDYHGTFDAYEAAKAKLFA--WRGLRAAVINRDDAAGRRLLEKLAGR-VRT 263

Query: 268 LSVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           ++ G          + +    V A        +     D +      G F V N L   G
Sbjct: 264 IAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVSNLLAVLG 323

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  +E+L  V GR + +G    +    + +DYAHT ++LE  L  +R 
Sbjct: 324 ALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 383

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +++ G
Sbjct: 384 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVVAG 443

Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 444 MTAPDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 497


>gi|33862503|ref|NP_894063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9313]
 gi|46576942|sp|Q7V8U6|MURE_PROMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33640616|emb|CAE20405.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9313]
          Length = 507

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 149/500 (29%), Positives = 228/500 (45%), Gaps = 20/500 (4%)

Query: 11  FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L+  + +  P       +  VS DSR +  G +F+ + G + DG  F  QA+A    
Sbjct: 5   LHSLLRAVGLPVPEGLANPSLAMVSCDSRSVAQGCLFLGLPGEQVDGGSFWRQALAA--G 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A       +         ++  ++V +    ++   A+  + +      ++ VTGT+GK+
Sbjct: 63  AEAAVIGPAAAALQPPGPTDAVVVVPEPVAAWVGQLAAAFWQQPSSRFALIGVTGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ +    G S+   G       +++     TT     L   L+     G     
Sbjct: 123 TTTHLIEHLSVAVGRSTALFGTLVNRWPNYSVPATHTTAFADRLQAQLAQAVEAGAELGV 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--PA 244
           +E SSH L+Q R+ G +     FTNL +DH+DYH + +AYF AK +LF   L +     A
Sbjct: 183 MEVSSHALEQQRVAGCRFAGAVFTNLTQDHLDYHCSMEAYFEAKAQLFAPPLLESGSAKA 242

Query: 245 IIYADDAYSKEVMKRAHNAGCRV-LSVG-YQGKFIHLKKVCAIHNKQQV--TISVEGKDF 300
           ++  D  +   + +R  +   R  L+ G  Q     LK      +   V   +     + 
Sbjct: 243 VVNIDSPWGARLAQRLGDTCWRSSLAEGVLQQADAELKMTELTMSSDGVQGRLISPCGEG 302

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--- 357
            F  PL G F + N L A G+ +  G+   L+L+ +     VPGR E V   +       
Sbjct: 303 WFDSPLMGRFNLMNLLQAVGVLLQQGLPLPLLLKAIADFRGVPGRMERVLIPAADATQVP 362

Query: 358 -IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE  LK  R  TS  +  VFGCGGDRD+GKR  M  IA  LAD  +VT
Sbjct: 363 TVLVDYAHTPDGLENALKASRPFTSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVT 422

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I A+++ GIP       + +R  AI  AI      DV++VAGKGHE   
Sbjct: 423 SDNPRTEDPQQILADVVAGIPEGTTCTVEVDRAVAIALAIAEAAPGDVVLVAGKGHEDYQ 482

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+    K    D +     L
Sbjct: 483 ILGT-SKVHFDDREEAERAL 501


>gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 507

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 142/505 (28%), Positives = 243/505 (48%), Gaps = 37/505 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ D++       +  L+      + R +  ++ +S  ++ G+IF+AI G+KEDG+++ 
Sbjct: 1   MKITDILK------MGHLNYSEPLNQSRNVKGITDNSNEVRPGYIFIAIKGHKEDGNIYT 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QAI  GA  I+    ++            P L V N RK L   A + Y    +N  ++
Sbjct: 55  QQAILNGAILIIGEDDFT--------NLTVPYLKVKNARKTLGQVAKKFYKDPSKNKIMI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++  F++Q+ ++ G S   IG     I+     +  TTP+   + + L+  
Sbjct: 107 GITGTNGKTTIGFFIKQLLEKQGYSVSSIGTIYNEINGKRIQSVNTTPNAKTINQLLTAS 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + Q    V +E SS GL Q+RL+GI+     F NL  DH+DYH T + YF  K  LFE+L
Sbjct: 167 TDQ---VVVMEVSSQGLAQNRLEGIQFDYALFNNLQHDHLDYHGTMEEYFECKALLFEKL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII  +D + K++ +R    G +V++VG +           ++    V++  + 
Sbjct: 224 -KLDGTAIINYNDRWGKKLTERLTAQGKKVITVGEEPTNQVQILAKELN---NVSVRYKN 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+++   PLPG   + N  +++ +   + +    V  ++ +   + GRFE     ++   
Sbjct: 280 KEYNLRTPLPGVHNLENLTMSSCVAHELEVPYEQVTTYMSQFSGIAGRFEIFHLANK-VT 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L   +    +  + RII VFG  G+RD+ KR  M +    L+  AI+T 
Sbjct: 339 VVVDYAHTPDALATSINTAISNGAKRIITVFGFAGNRDESKRKAMLENVCRLSTYAILTV 398

Query: 418 --------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                   DN  S D   I+ E            +R  AI+ AI      D +++ GKGH
Sbjct: 399 TELFGSTIDNLYS-DYISIQKE-CQVEEKTSIIMDRTLAIQKAIWEAQSGDWVLLLGKGH 456

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E      N   K   D + ++ + G
Sbjct: 457 EQYKE--NYSLKTKTDQETVQYLQG 479


>gi|229828741|ref|ZP_04454810.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
 gi|229793335|gb|EEP29449.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
          Length = 511

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 143/503 (28%), Positives = 231/503 (45%), Gaps = 33/503 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQ 66
           +    + +  L     +  +R+I  VS DSR +  G +F+    G +ED   F+  A  +
Sbjct: 15  HGLLSQTVETLGERLGESLQREITLVSCDSRKVIPGTLFICKGAGFRED---FLRMAKER 71

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA   +    Y   D         P + V + R  ++  AS  Y +  E   ++ +TGT 
Sbjct: 72  GAAFYLSEKPYEGVDL--------PWIGVSDIRAAMAHSASFCYDRPWEAFRLVGITGTK 123

Query: 125 GKSSVASFVQQIC-----QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GKS+ A F++ I       R G  S  I    T     ++ +R+TTP PI L +  +   
Sbjct: 124 GKSTTAFFLKAIFDVYEKSRGGRPSGLISTILTEDGKESRPSRMTTPEPIELEEHFANAR 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
             G+ +V++E SS  L   R+  ++    +F N+G DHI    H T + YF +K+R+F +
Sbjct: 184 EAGLDYVTMEVSSQALKYDRVLDVQFDVAAFLNIGYDHISPIEHPTWEDYFASKLRIFSQ 243

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                  A+++    +S+E++  A  A      S   +   ++   +     +      V
Sbjct: 244 C----RTAVVHLGVDHSEEMLAAAQKARKVITFSETDERADVYGYGMKKQGRETHFKARV 299

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++ +++  +PG F V NAL A  +    GI    V E L++   VPGR E   +    
Sbjct: 300 LGQEREYILGIPGFFNVSNALAAIAVAEHYGIPYDCVKEGLKRAR-VPGRMEEYTSADGK 358

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAI 414
               +DYAH   S E +    +    GR IV +FG  G +   +R  +G++A   AD   
Sbjct: 359 IVTIIDYAHNRLSFEKLFAAAKEEFPGRRIVALFGASGGKAINRRRDLGEVAAANADYIY 418

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T+D+P  EDP +I  EI   I      +    +R EAIRTAI    +  +L++AGKGHE
Sbjct: 419 LTEDDPGREDPTRIAEEIASYIKPFGTPYEIIPDRKEAIRTAIHAAKEPTLLLLAGKGHE 478

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
            +    NG +K   D D  R+ L
Sbjct: 479 VMVRRANGYEKGPSDADCARKYL 501


>gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
 gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
          Length = 452

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 133/430 (30%), Positives = 206/430 (47%), Gaps = 11/430 (2%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  QL +   +    ++  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A
Sbjct: 17  LAELSGQLGVAAPEQT-AEVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++   A + +       +  P LVVD+ R  +   A+ +YG    ++L   +TGTSGK++
Sbjct: 76  VLTDPAGAER----VAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   +    +         I      +  TTP    L    + +  +G   V++E
Sbjct: 132 TAYLVEGGLRTVHSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTDAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG     G FTNL  +H+++H   + YF AK +LF     +    ++ A
Sbjct: 192 VSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSDMEDYFRAKAQLFTP--ERGRLGVVNA 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD Y + + K A        + G+       + V         T +  +G+      PLP
Sbjct: 250 DDEYGRRLAKEAGVPVVTYSAEGHPDADWRAEDVEVGTMDSTFTVVGPKGERIAARSPLP 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A       G+D     + +  +  VPGR E V    +     VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDA-GQPYLAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T GR+ VV GCGGDRD+ KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLRALRKVTEGRVHVVLGCGGDRDKTKRAPMGAAAARLADTAVLTSDNPRSEDPLS 428

Query: 428 IRAEIIHGIP 437
           I A ++HG  
Sbjct: 429 ILATMLHGAA 438


>gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 464

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 234/470 (49%), Gaps = 31/470 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I  +  +++  Q G +F+A+ G    G  +I QAI +G  AI+V         S  I
Sbjct: 16  DIEIKGLCLNAQSTQPGDLFIALQGKLTHGADYINQAIDKGCVAILVD--------SKEI 67

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               P + +DN  ++L   A+  Y      NI+++TGT+GK+SVA F+ Q+  + G+ + 
Sbjct: 68  ECVIPSIRIDNLSQYLQTLANTFYKNAIKVNIISITGTNGKTSVAYFISQLLTKLGIKNG 127

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG    I+   Q +  TTP  + L + L       + H  +E SSH L Q R+ G+ + 
Sbjct: 128 LIGTLG-ITHSQQLSLNTTPDILTLYQVLDNYYQNNIHHAILEVSSHALTQDRIAGLNIK 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH T   Y   K +LF  +L      I+  DD++ K  +    +   
Sbjct: 187 QAIFTNLTQDHLDYHHTLDKYQATKEKLF--VLDTVESVILNQDDSHYKHFLNITKDKKR 244

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+G    F  +K +      Q   + ++   + F  P  GEF + N L A     A+
Sbjct: 245 ISYSLG---DFDSIKTIE-----QGFLVQLD--HYVFEIPFLGEFNLLNILAALNSVEAL 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     ++    +L   PGR + +  +      ++DYAHT +++   +  ++       I
Sbjct: 295 GFKRDDIIPLFYQLLPPPGRMQRIEPH----LAWIDYAHTPDAIGNAITTLKKHYPNFKI 350

Query: 386 -VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--- 441
            +VFGCGG+RD+ KR  MGKIA +LAD  I+T+DNPRSE+P+ I   I+ GI    +   
Sbjct: 351 RIVFGCGGNRDKDKRAEMGKIASNLADTIILTNDNPRSENPKTIIENILSGIDDSYKLDI 410

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
             NR  AI TAI  L + + L++AGKGHET+   ++       D +I + 
Sbjct: 411 IENRQLAIETAITTLKENECLLIAGKGHETIQQFSDKTI-YLNDLEIAQN 459


>gi|227488524|ref|ZP_03918840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091418|gb|EEI26730.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 507

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 153/485 (31%), Positives = 229/485 (47%), Gaps = 24/485 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +++ ++ +    +   +F A+ G +  G  F   +    A AIV        +   T
Sbjct: 23  PDLEVSHIAINGADARPDGLFAAVAGTRSHGAKFAGSSQ---AAAIVTDKPGY--EILKT 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
                P++V D+ R  L   ++ + G       ++ +TGTSGK++ +  ++     +G +
Sbjct: 78  AGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTSGKTTTSYMMEAGLAAAGAT 137

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG T T I+       LTTP    L +    +   GVTHV +E SSH +   R+ G+
Sbjct: 138 VGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVTHVVMEVSSHAIALGRVGGV 197

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261
                 FTNL +DH+D+H T + YF+ K +LF    P +   +II  DD +  ++ + A 
Sbjct: 198 DFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAKKSIICVDDKWGVDLTRLAG 257

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V + G    F+            Q T++ +GK       +PG F V NA +A   
Sbjct: 258 PAATTVSTKGAPANFMATDIETEPDGTSQFTVAYKGKKQRVTLHIPGVFNVANASLAIAA 317

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                +D    +  L  +  VPGR E +  N +G    VDYAH   +LE  +K +R    
Sbjct: 318 AAFTDLDVRTFIAGLANIQ-VPGRMEKID-NDKGVLAVVDYAHKPAALEAAIKAVRDEVE 375

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR+I VFG GGDRD GKRPIMG  A+  AD+ I+TDDNPRSEDP  IR  I  G   F+ 
Sbjct: 376 GRVIAVFGAGGDRDHGKRPIMGSAAVAGADVVIITDDNPRSEDPATIRKAIEDGAKEFVV 435

Query: 442 ------------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                        G+R +AI  A+      D ++VAGKGHE   +V  GE +   D   +
Sbjct: 436 SHPSRRSVEICNVGDRGQAIALAVNKSQAGDAIIVAGKGHEQGQLV-GGEMRDFDDRIKL 494

Query: 490 REILG 494
           R  L 
Sbjct: 495 RRALA 499


>gi|226357198|ref|YP_002786938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus deserti VCD115]
 gi|226319188|gb|ACO47184.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Deinococcus deserti VCD115]
          Length = 493

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 149/510 (29%), Positives = 226/510 (44%), Gaps = 39/510 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL           L++      +  +  V+ ++  +Q G+ FVAI G K DGH F+
Sbjct: 1   MRLHDLAA--------ALNVPTTSLPDLPVVGVTHNAAWVQPGFAFVAIRGAKFDGHSFL 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            Q    GA A++             + S  P L V + R  L+  A+ L G       ++
Sbjct: 53  QQVREAGAVAVLGE------GMPDGMNSPLPYLTVPSARAALADAAAALAGHPSRALKVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYLA 171
            VTGT GK++ +   + + + +GL +   G  ST+                TTP    + 
Sbjct: 107 GVTGTDGKTTTSWLTRHLLREAGLQT---GLLSTVGFELPDGELRHFPAHFTTPEAPQVQ 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + L  + + G + V +EASSH L   R+ G+      +T+L  +H+D+H T + YF  K 
Sbjct: 164 QTLQDMVAAGASAVVLEASSHALALDRVRGVDWDVAVWTHLTSEHLDFHGTVENYFADKR 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           RL E        A++ ADD ++ ++  R         S+   G       +         
Sbjct: 224 RLVER----APFAVLNADDPWTGQL--RGVAPAETTYSLDGAGADWQATDIQERLTGLHF 277

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++     FD   P+ G F V NAL A      +G D+A +   L     VPGR E V  
Sbjct: 278 QVNSPLGAFDAALPMIGRFNVANALAAMAAAAHLGADAAQLAAGLASFRGVPGRMELVPA 337

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLA 410
             +  R+ VD+AHT  SLE  L  +R  T+GR+ V +   GG RD GKR  +G++A  LA
Sbjct: 338 GGQEVRVIVDFAHTPPSLEKALSTLRATTTGRLWVLIGSAGGPRDPGKRAPLGEVATRLA 397

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D A+ T+++ R    E I  E+  G        FI  G+R EAIR  I+     D +++A
Sbjct: 398 DHAVFTEEDSRDTPLEDILREMERGARQGGRTNFISIGDRREAIRHVIQAAGSGDTVLLA 457

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           GKG E       G      +    RE L L
Sbjct: 458 GKGPEDTLERLTGTLPW-NEVQEAREALAL 486


>gi|126643214|ref|YP_001086198.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 414

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 133/389 (34%), Positives = 199/389 (51%), Gaps = 14/389 (3%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
           P  I+AVTGT+GK++++  + ++          +G T   I      +  TT   + L  
Sbjct: 17  PLRIIAVTGTNGKTTISRLIAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQN 76

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           AL   + QG T  S+EASSHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK R
Sbjct: 77  ALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKAR 136

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNK 288
           LF+        A+I  DDA++  ++K A N   +      S+       ++  +      
Sbjct: 137 LFQ--FNSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAG 194

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +  +   F    PL G F V N + A       G D   ++  + KL   PGR + 
Sbjct: 195 ATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQV 254

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +  + R     VDYAHT ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD
Sbjct: 255 IRDDER--LFVVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALD 312

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A+  I+T DNPR+EDPE+I A++  GI        E  +R EAI+   E     D++V+
Sbjct: 313 GANPVILTSDNPRTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVI 372

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHE    + NG +    D   +R  +
Sbjct: 373 AGKGHENYQEI-NGVRHWFDDVVEVRSAI 400


>gi|329944588|ref|ZP_08292728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530141|gb|EGF57024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 528

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 233/479 (48%), Gaps = 21/479 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS DS     G +FV + G    G  F  +A+  GA A++  +  +L   +  +   
Sbjct: 47  ILGVSVDSGDTAPGELFVGLPGFTAHGARFSDEAVGSGAVAVLTDADGAL--IAHEVAPG 104

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRS-GLSSFQ 146
           TP+LV D+ R  +   ++ +Y      ++  AVTGT+GK++ + F+  I     G     
Sbjct: 105 TPVLVHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTSYFLDAILSAHVGGCMVA 164

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 +   + ++  TT     L + ++      V   S+EASSH +  HRLDG+ +  
Sbjct: 165 GTVELRVGERSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGVVVDV 224

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+D+H+T + Y  AK RLF     +     I  DD +   +  +A     R
Sbjct: 225 AGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARRGV--ICVDDQWGAALAAQAPIEVDR 282

Query: 267 VLSV-GYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLC 322
           V +  G       +            T ++   +G+  +   PLPG   V NA +A  + 
Sbjct: 283 VRAYPGDVPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMA 342

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           I  G+ +A     L   H +PGR + +     R G   VD+AHT  ++++ LK +R IT 
Sbjct: 343 IRAGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMDLALKAVRPITP 402

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----P 437
           GR+IVVFG  GDRDQGKRP++G++   LAD+ +VTD+NPRSEDP  IR  I+ GI    P
Sbjct: 403 GRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPRLIRNAILDGIRTVRP 462

Query: 438 GFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           G  +       R +A+R  +E+    D ++V GKGHE    +     +   D  ++ E 
Sbjct: 463 GLEDVEEVTTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMAGEFIRY-NDAPVMAEA 520


>gi|324998161|ref|ZP_08119273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudonocardia sp. P1]
          Length = 534

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 222/479 (46%), Gaps = 26/479 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +   +  +  ++ G +F A+ G +  G  F  QAIA GA A++  +  +  D      S 
Sbjct: 51  VTGATLRAGSVRPGDLFAALPGARAHGADFAAQAIAGGAAAVLTDADGA--DRPEIRHSR 108

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LV    R+ L   ++ +YG+    +  L VTGTSGK++V   ++     +G S+  +
Sbjct: 109 LPVLVHPAPREVLGPVSAAIYGEPTARLRVLGVTGTSGKTTVGHLLEAGLTAAGRSTGLL 168

Query: 148 GPTST------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           G   T          A  +  TTP    L    + +   GVT V++E SSH L   R+ G
Sbjct: 169 GTVRTRVQVPGEEPRALPSAFTTPEAPDLQALFAVMVEAGVTDVAMEVSSHALALGRVGG 228

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADDAYSKEVMK 258
            +   G+FTNL +DH+D+H T   YF AK RLF             ++  DD + +++  
Sbjct: 229 SRFAVGAFTNLSQDHLDFHPTMTDYFEAKARLFGGGGAGVEAARHGVVCIDDEWGRQLAS 288

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQVYNAL 316
           R  +A               ++ + A  +  Q    +   G        LPG + V NAL
Sbjct: 289 RRPDAVTVGSDPAGPHATWTVRDLAAHPDGTQTFTAVGPGGLAQAVTLALPGRYNVANAL 348

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA     A GI   +  +   +L  VPGR + V    +     VDYAH   ++  +L  +
Sbjct: 349 VALACLDADGIPPEVAAQGFARLS-VPGRMQRVDA-GQPWLAVVDYAHKPAAVAALLDAL 406

Query: 377 RT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           R       R+I V GCGGDRD GKRP+MG  A   +D  +VTDDNPR E+P  IR  ++ 
Sbjct: 407 RAQIHPHARVITVLGCGGDRDTGKRPLMGAAAAIRSDTLVVTDDNPRGEEPATIRRAMLE 466

Query: 435 GI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           G          IE G+R  AI  A+      D +V+AGKGHET   V +G K    D D
Sbjct: 467 GAMHEPARGDVIEIGDRRSAIVYAVRSARPGDAVVIAGKGHETGQEV-HGVKYPFDDAD 524


>gi|319946493|ref|ZP_08020729.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
 gi|319747324|gb|EFV99581.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
          Length = 481

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 132/508 (25%), Positives = 225/508 (44%), Gaps = 43/508 (8%)

Query: 1   MKLQ---DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MK++   +++ +D  F E++ Q   +         N++S DSR + A  +F  + G    
Sbjct: 2   MKIETVLNILKEDHNFREIL-QDGEYHYSASGVSFNQISYDSRKVNAETLFF-VKGANFK 59

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              F+ QAI QG +  V    + +         + P ++V + ++ +SL A   YG    
Sbjct: 60  -KEFLEQAIEQGLQWYVAEQDFEV---------SIPAIIVTDIKQAMSLIAMEFYGHPER 109

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLA 171
              +LA TGT GK++ A +  +I ++ G     +   +T         + LTTP  I L 
Sbjct: 110 QLKLLAFTGTKGKTTSAYYAYKILEQ-GHRPAMLSTMNTTLDGKTFFKSTLTTPESIDLF 168

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNA 229
           + ++   +   TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  
Sbjct: 169 EMMAQAVANDRTHLIMEVSSQAYLVKRVYGLIFDVGVFLNISPDHIGPIEHPTFEDYFYH 228

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  L E         ++ +D  +   + +                 F   +    + N +
Sbjct: 229 KRLLMEN----SRAVVVNSDMDHFDILAEEVAEQ---------DHDFYGSQSGNQVQNSK 275

Query: 290 QVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             + SV GK   D+   L G F   NA+ A   C+ +G     + + + K   VPGR E 
Sbjct: 276 AFSFSVTGKLAGDYQTQLIGRFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRME- 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T   G ++++DYAH  +SL+ +L  + T  +G I +V G  G++ + +R   G +  D
Sbjct: 334 VLTQKNGAKVFIDYAHNGDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLED 393

Query: 409 LADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIE-MLNKQDVLVVA 465
             +I   +T D+P  EDP  I  EI   I   +E   +R +AI+ A+      +D +++A
Sbjct: 394 HPEIQVFLTADDPNYEDPLAIAEEISSFITRPVEKIADREQAIQQAMATTSKPEDTVIIA 453

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG +   IV   +++   D  I    L
Sbjct: 454 GKGADCYQIVNGVKEEYPGDAAIAERYL 481


>gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 538

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 227/503 (45%), Gaps = 26/503 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL +QL +       E  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA 
Sbjct: 17  LAELADQLGVDASGVPAEAAVTGITHDSRAVRPGDVYAALSGARLHGADFAAQAADLGAA 76

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127
           A++     + +       +  P+LVVDN R  +   A+ +Y +   ++L   +TGTSGK+
Sbjct: 77  AVLTDPDGAER----AAATGLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGKT 132

Query: 128 SVASFV-----QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           + A  V         + +G  +  IG     I      +  TTP    L    + +  + 
Sbjct: 133 TTAYLVDGGLRAAAEKAAGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERD 192

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  V +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF +   + 
Sbjct: 193 VHSVVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRA 252

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDF 300
               I  DD Y + +++ +        + G+         V         T I   G+  
Sbjct: 253 GV--INYDDEYGRRLIEESEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAIGPNGETV 310

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G F V NAL A       GID     + +  +  VPGR E V    +     V
Sbjct: 311 RAAAPIAGPFNVANALAALVALAVAGIDPQTAADGIGAVPGVPGRLERVDV-GQPYLAVV 369

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH ++++E +L+ +R +T G++  V GCGGDRD+ KR  MG      AD A++T DNP
Sbjct: 370 DYAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGSAVARYADTAVLTSDNP 429

Query: 421 RSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           RSEDP  I A ++ G            + + +R  AI  A+      D ++VAGKGHE  
Sbjct: 430 RSEDPLAILAAMLAGAAEVPSHERGDVLVEEDRENAIAAAVARAEPGDTVIVAGKGHEQG 489

Query: 473 HIVTNGEKKMSVDCDIIREILGL 495
             +  G  +   D  ++RE + L
Sbjct: 490 QDIA-GVIRAFDDRQVLREAIEL 511


>gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
 gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
          Length = 506

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 135/511 (26%), Positives = 228/511 (44%), Gaps = 28/511 (5%)

Query: 1   MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M + + ++     +L            E +I  ++ DSR + + ++F A+ G   DG  F
Sbjct: 1   MNMNKKMLNNVLSKLDKNFVKEIKGSCEVEILGLTYDSRCVLSHFVFFALPGLHFDGQEF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENI 117
           I  AI QG+  IV ++  +  D       N   + +D  N +KF+S FA   Y +  +N+
Sbjct: 61  INSAIEQGSNVIVHTNDINFYD------PNVTYIKIDSCNIKKFMSNFAHIFYNEPSKNL 114

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLA 171
             + VTGT GKSSV  ++  + +  G+    I        + +      R +TP    + 
Sbjct: 115 KIIGVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIH 174

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             LS +    V +  VE++SHGLD    RL  I       TN+  +H+++H T Q Y NA
Sbjct: 175 LVLSKMVENNVEYAIVESTSHGLDIRTSRLIDIAYFVAVLTNVSHEHLEFHGTMQHYLNA 234

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K+ LF          II  DD      +   + A     S+  +     + K+       
Sbjct: 235 KLNLFSSADANGGFGIINMDDKNFSTFLNTINRAY--TYSLENKNADFFVSKINEQMGFT 292

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEF 348
           +     +   +D    L G F V N + A  +    + +D + +++ L  +  + GR + 
Sbjct: 293 EFEFYHKNVKYDARVNLTGSFNVENVMAALIVVSQVMNVDVSELIDKLVNIEGLFGRMQG 352

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +   + +DYAHT  +   I    + ++  R+I VFG  G+RD  KR + G+IA  
Sbjct: 353 VDF-GQDFSLIIDYAHTPGAFLKIFPIFKRLSKNRLISVFGSAGERDVLKRKLQGEIADR 411

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVL 462
            +DI I+ D++PR ED  +I  +I  GI G           +R  AI  AI + +  D++
Sbjct: 412 YSDIIILCDEDPRGEDSMQIIRDIAEGISGKTLNRDLFFIPDRKSAIEKAINIAHTDDLV 471

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V  GKGHE   I  +       +  ++++I+
Sbjct: 472 VTLGKGHENSIIYKD-RSIFWDEQAVVKDII 501


>gi|108800227|ref|YP_640424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119869355|ref|YP_939307.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
 gi|108770646|gb|ABG09368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119695444|gb|ABL92517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
          Length = 508

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 168/510 (32%), Positives = 245/510 (48%), Gaps = 25/510 (4%)

Query: 1   MKLQD--LIYKDFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MKL+    +      L  Q+   P       + ++  V+   +    G +F A+ G+   
Sbjct: 3   MKLRPSHPVGHALGALAEQVQAVPAPGFPVPDIRVTGVTLRGQDALPGDLFAALPGSSAH 62

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F+  A+A GA A++  +A ++   +  +    P+LV  + R  L   AS +YG   +
Sbjct: 63  GARFVADAVAAGAVAVLTDAAGAVMLGADPV---VPVLVHPDPRAVLGAVASTVYGHPSQ 119

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
              ++ VTGTSGK++    V+   + +G  +  IG     I    Q + LTTP    L  
Sbjct: 120 HLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQA 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+ +  QGV  V +E SSH L   R+DG+   AG FTNL RDH+D+H T + YF+AK  
Sbjct: 180 LLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAG 239

Query: 233 LFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ- 290
           LF+ +   +   A++  DD   + +  RA  A    +S   +      + V A+    Q 
Sbjct: 240 LFDPQSRTRAELAVVCVDDDAGRAMAIRAGRAV--TVSASGRPADWRAEDVRAVEAGAQE 297

Query: 291 -VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            V +   G        LPG + V N ++AA L  A+ +        L     VPGR E V
Sbjct: 298 FVAVDPAGVHHGLRIALPGHYNVANCVLAAALLDAVDVSPEQAAPGLRT-ATVPGRLEAV 356

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +     VDYAH   +L  +L+ +R    GRI VVFG GG+RD GKR  MG++A +L
Sbjct: 357 D-RGQDFLALVDYAHKPGALRAVLETLRGQGKGRIAVVFGAGGNRDAGKREPMGRVAAEL 415

Query: 410 ADIAIVTDDNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AD+ +VTDDNPR EDP  IR      A    G    +E G+R EAI  A+      DV++
Sbjct: 416 ADLVVVTDDNPRDEDPATIRAAIMAGARAAGGGADVVEIGDRREAIAHAVRWARPGDVVL 475

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           VAGKGHET      G      D   + E+L
Sbjct: 476 VAGKGHETGQT-AAGRTHPFDDRVELAELL 504


>gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
 gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
          Length = 498

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 141/469 (30%), Positives = 216/469 (46%), Gaps = 26/469 (5%)

Query: 31  NEVSSDSRHIQ-AGWIFVAIVGNKEDGHLFIPQAI-AQGAEAIVVSSAYSLQDFSATIRS 88
           + + +D R +     +F+A+ G K D        +  Q    ++V         SA+   
Sbjct: 26  SGLVTDHRRLTGPRDVFLAVPGEKFDPRNLADDLLTEQRCGLVLVDYDDQRAYQSAS--- 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +L V + +  L+  A   Y    +   I+AVTGT+GK++V  ++ Q   + G  +  
Sbjct: 83  ---VLPVLHLKTMLADLAFGYYETPSDAMTIIAVTGTNGKTTVTRWLAQSLNQLGKKAAV 139

Query: 147 IGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG                TTP  + +   L  L   G   V +EASS GL+Q RL  + +
Sbjct: 140 IGTLGYGEPDQLKAHTGLTTPDVVGVHHLLHELRQAGFDTVCIEASSIGLEQRRLACVSI 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH    AY  +KM L     P    A++ ADD++  E +    +  
Sbjct: 200 DVALFTNLSQDHLDYHGDMAAYGRSKMILAS--WPTLRLAVVNADDSFGVEFLAHVQHRN 257

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               +VG+       +  V      Q++ + + G       P+ GEF   N  +     +
Sbjct: 258 IDCSAVGHVSTADCQIVSVAHQEKGQRIELKINGAITQIDTPIIGEFNADNMALVFATLV 317

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
            +G D++ V   L  +   PGR + +        + VDYAHT ++LE  L  +R   +  
Sbjct: 318 RLGYDASEVKRALAGVTPAPGRMQHIEGE---PAVVVDYAHTPDALEKTLLALRPFANKR 374

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
            G++ VVFGCGGDRD+ KRP+MG  A+  AD  ++T DNPRSE PE I  EII GI    
Sbjct: 375 MGKLWVVFGCGGDRDRSKRPLMGAAAVAKADFVVLTSDNPRSEKPETILQEIIAGIDAPL 434

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
                 + +R  AI  A+   N QDV+++AGKGHE+   +       S 
Sbjct: 435 QNNIHVEVDRPVAIEFAVRKANAQDVVLLAGKGHESTQTIGTQVIAHSD 483


>gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
 gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
          Length = 481

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 134/500 (26%), Positives = 223/500 (44%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR ++   +F A  G       F+  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVKEDTLFFA-KGAAFK-KEFLIS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AISQGLGWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      +T+       +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K  L E  
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLLMEN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  II +D  +   + ++  N             F   +    I N +  + S  G
Sbjct: 236 ---SRAVIINSDMDHFSVLKEQVENQ---------DHDFYGSQSSNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   
Sbjct: 402 TADDPNYEDPMTIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  +    L
Sbjct: 462 IVQGKKEAYPGDAAVAENYL 481


>gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 481

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 224/500 (44%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I     +   +++   +++S DSR   +  +F  + G       F+ +
Sbjct: 9   DILKKDQNFREIIADGDYY-FNYQDLTFDKISYDSRKADSRTLFF-VKGEHFK-REFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+A G    +  +   +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVAAGLGFYLSETDLEV---------GIPVLLVNDIKQAMSLIAMEFYGHPEQKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      +T+       + LTTP  + L + ++   +
Sbjct: 117 TGTKGKTTAAYFAYNILKQSHKPALLSTMNTTLDGETFFKSTLTTPESLDLFEMMAQAVA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NARTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ +   + + + ++  N         Y   F       +I   Q  +   +G
Sbjct: 236 ---SRAVVVNSGMDHFQVLAEQVAN---------YGHDFYGPDSANSILQSQAFSFEAQG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     +   + +   VPGR E V T S G 
Sbjct: 284 KLAGSYDIQLIGRFNQENAIAAGLACLRLGASLEDIQAGIAQ-TRVPGRME-VLTQSNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SL  +L  ++    G+ ++V G  G++ + +R   G +     +I  I+
Sbjct: 342 KVFVDYAHNGDSLAKLLSVVQEHQKGQTVLVLGATGNKGESRRKDFGLLLNQHPEIKVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   ++   +R EAI+ AI +   + D +++AGKG +   
Sbjct: 402 TADDPNREDPIAIAKEIASYISFEVDMIADREEAIKKAISLTSAEGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ + +     D  +  + +
Sbjct: 462 IINDQKVPYPGDYALAEKYI 481


>gi|116670126|ref|YP_831059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
 gi|116610235|gb|ABK02959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
          Length = 550

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 153/501 (30%), Positives = 236/501 (47%), Gaps = 34/501 (6%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P       +  +S +SR +Q G ++VA+ G    G  F+ QA+A GA A+V     + 
Sbjct: 42  VVPGASSSVPVTGISLNSRTVQPGDLYVALPGAARHGADFVSQAVAAGAVAVVTDDDGA- 100

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQ 134
           +  + +  +  P+LVVD  R  +   A+ +Y   PE     ++  VTGT+GK++   F+ 
Sbjct: 101 RLLALSADTPVPVLVVDEPRSAVGGLAALIYQSRPEGGTSPSLFGVTGTNGKTTTTYFIN 160

Query: 135 QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            + Q  G  +  IG    +       + LTTP    L   L+ +  +G+   S+E SSH 
Sbjct: 161 ALLQALGRRTGLIGTIEILAGGAPIPSLLTTPESTDLHALLALMRERGLDAASMEVSSHA 220

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +  HR+DG++     FTNL +DH+D H T   YF  K RLF     K +   +  DD + 
Sbjct: 221 VSFHRVDGVQFDVAGFTNLTQDHLDLHGTMDEYFQTKARLFTPRHAKSAVITV--DDEWG 278

Query: 254 KEVMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLP 307
           + +   A      + +              +          +  +   +G +      LP
Sbjct: 279 RRLASAAGIPVTTLATAQGNDPAAPAADWTVTAAAPRGLGTEFRLRHRDGSELRVHTGLP 338

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYA 363
           G F V NA +A  + +A G++ A +   L++       VPGR + V T        VD+A
Sbjct: 339 GSFNVSNAALATVMVLASGVEPATLQAALDEADPFTVAVPGRMQLVSTA---PAAVVDFA 395

Query: 364 HTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  ++L+  L+ +R+   G R+IVVFG  G RDQGKRP MG IA  LAD+ I++DD+P  
Sbjct: 396 HNPDALQRALEAVRSTEPGSRVIVVFGATGQRDQGKRPAMGAIAARLADVVIISDDDPHD 455

Query: 423 EDPEKIRAEIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           ED   IRA+++ G     E G           R  AIR A+ M   QD ++VAG+GHE  
Sbjct: 456 EDAAAIRADVLAGAREAKESGGLGCTILESYPRDVAIREAVNMAQPQDTILVAGRGHEVW 515

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V      +  D   +RE L
Sbjct: 516 QEVKGVNLAL-DDRVELREAL 535


>gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
 gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
          Length = 485

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 128/478 (26%), Positives = 223/478 (46%), Gaps = 18/478 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  + SDSR++    IF  + G   DGH +I  A+ QGA+ IV S   + +     
Sbjct: 6   EEFKVVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYKH---- 61

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
                  + V+N    L+  A   Y      +  + VTG+SGK+ VA  ++++     L 
Sbjct: 62  --RGVLYIKVNNVLDELNRVADVFYDHPSYKMTMIGVTGSSGKTVVALMIKEVLSHY-LK 118

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG  +   +   +    TTP  I++ + L+ +  + V  V++E SSHGL   R+DG+
Sbjct: 119 MGYIGTNNIEYAGVIEQCPYTTPETIFMQRHLNDMVKRDVKGVTLEVSSHGLALKRVDGV 178

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTN+  +H+D+H T +    +K +LF  L+ ++  AI+  D+     ++K   +
Sbjct: 179 HFDIAIFTNVYEEHLDFHGTMEHLMASKAKLFT-LIDEKGYAILNTDEVRFYNLVK--DS 235

Query: 263 AGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             C +L+ G + K     + +    +  +  + +         P+ G F + N L     
Sbjct: 236 IRCHLLTYGIEHKAHVMARNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNISNVLAVITS 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-T 380
            +A+ +    VLE +  +  V GR E +        + VDY   + S E + +  +++ T
Sbjct: 296 MLALEMPMDQVLESVGYIRGVDGRMELLEHPY-PFTVIVDYCQHAKSFEKVFQFAKSVQT 354

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
           +GRII VFG  G ++  KR  +GK+A    +  I+T ++ R ED   I  +I   +  P 
Sbjct: 355 NGRIIAVFGAPGKKNYNKREKIGKLANQYCNQVILTAEDNRDEDIHDICLDIQEYLEKPV 414

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +   +R  AI  AIE+ N  D++++ GKGHE     + G +    D  +  E +  I
Sbjct: 415 SVIIEDRRIAIEQAIEIANHGDIILILGKGHEQFMASSIGNEPYPGDKYVALEAIDKI 472


>gi|172059544|ref|YP_001807196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992061|gb|ACB62980.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 146/477 (30%), Positives = 222/477 (46%), Gaps = 33/477 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ +D+R +QAG +F+   G   DG     FI  A+A+GA A++          +  +  
Sbjct: 30  QLHADTRSLQAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVAL 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQ 146
                      +     AS  YG   +++LA+  TGT+GK+S   ++             
Sbjct: 87  AV-----PALDQLAGDIASGWYGDPSDSMLAIGVTGTNGKTSCTQWIAAALTALHQPCAV 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G    
Sbjct: 142 IGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFD 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH T  AY  AK +LF         AI+  DDA    ++++      
Sbjct: 202 IAVFTNLTQDHLDYHGTFDAYEAAKAKLFA--WRGLRAAIVNRDDAAGCRLLEKLAGR-V 258

Query: 266 RVLSVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R ++ G          + +    VCA        +     D D      G F V N L  
Sbjct: 259 RTIAYGIGDAQTPDADRELVALDVCATATGTAFHLRSSWGDADVEVGTLGAFNVSNLLAV 318

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNI 376
            G  +A  +     +  + +L  V GR + +G    +    + +DYAHT ++LE  L  +
Sbjct: 319 LGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDAL 378

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I
Sbjct: 379 RPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVI 438

Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G+          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 439 AGMTVPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|328947387|ref|YP_004364724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
 gi|328447711|gb|AEB13427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
          Length = 568

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 131/547 (23%), Positives = 221/547 (40%), Gaps = 65/547 (11%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++ +  I   +  +  +  ++ DSR ++  ++F A+ G    G+ FI QA++ GA A+V
Sbjct: 20  KIVAEDGISSPKNTDACVEGLAFDSRDVKENYLFFALPGTHTTGNKFIAQAVSCGAGAVV 79

Query: 73  VSSAYSLQDFS------ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTS 124
                + ++ S      A+       + V ++R  +S  +S  Y      ++    TGT 
Sbjct: 80  FQDEITQEEHSQIKEALASSSKKVVFVKVPSSRFAMSPVSSCFYDNPSSKLVVYGVTGTE 139

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GKSS  SF+ Q+ + +G+ +  I          +       TTP    + + L  +   G
Sbjct: 140 GKSSTVSFIWQLLRLNGIKAGFISTVQYSLGGDAIDNPQHQTTPEAPVVQRELYEMVCNG 199

Query: 182 VTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            TH  VE+SSHGL    +RL  +      F N+  +H+++H T + Y + K  LF  L  
Sbjct: 200 CTHAVVESSSHGLSKKLNRLGNVLFDCAVFMNVTLEHLEFHGTYEQYKSDKANLFRALDL 259

Query: 240 KES-------------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----------- 275
                             ++  +D  +        +      + G  GK           
Sbjct: 260 HNHEKTIAGVATKIPAFGVVNLEDPAASYFASCTKHKTIGFTTEGKAGKQAALGLSSPPL 319

Query: 276 --------FIHLKKVCAIHNKQQVTISV---------EGKDFDFLFPLPGEFQVYNALVA 318
                   +   + + +       +I           E         +PG F  YN   A
Sbjct: 320 PEIPKDMPYFSCRNIASARFGLAFSIHRFETHDSLNNENSVVHVKASVPGAFNAYNITAA 379

Query: 319 AGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                   GI    +    +KL  V GR   +    +   + VDYAHT +S E I   ++
Sbjct: 380 ILAVHGTTGISIEKLALCAQKLTSVKGRMTVID-EGQPFEVIVDYAHTPSSFETIFPPLK 438

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               G++I VFG GG+RD  KRP+ G+IA    DI I+TD++PR ED   I  +I  G  
Sbjct: 439 NRAMGKMICVFGSGGERDTTKRPLQGEIAARFCDIVILTDEDPRKEDRMTIIEQIALGAR 498

Query: 438 GFIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
              +K         +R +AIR A  M  + D++++ GK HE   I  +   K     +  
Sbjct: 499 KEGKKDNVDLFLVPDRPQAIRKAFSMAKENDIVLLLGKSHENSIIYADNAIKYDEISE-A 557

Query: 490 REILGLI 496
           +  L  +
Sbjct: 558 KNALKEM 564


>gi|325109906|ref|YP_004270974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
 gi|324970174|gb|ADY60952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
          Length = 504

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 138/487 (28%), Positives = 226/487 (46%), Gaps = 25/487 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             ELI Q S   +        ++++ SR      +FVA+ G+  +   ++ QA AQGA  
Sbjct: 14  LRELIPQASY--VGNANIVFRDIATHSRSCNRQTLFVALSGSHREEGAYLRQAAAQGAAG 71

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           I+    + L D +      TP  +V N R+   L    L G+  E +    VTGT+GK++
Sbjct: 72  ILTD--FPLSDLA------TPQCIVPNVRRTYGLLCQSLAGRPAEQLRTFGVTGTNGKTT 123

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSPIYLAKALSYLSSQGVTHVS 186
           V   ++ I + +  +   +G              T  TP     A+ +  +   G T  +
Sbjct: 124 VTWMLRSIVKAANENCGLLGTIEYSDGCHTPEPATLTTPDAAVTAQWMRRMVQAGATAAA 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH +DQ RL G+ L  G  TN+  DH+DYH +   Y   K R+   LL  ++P ++
Sbjct: 184 IEVSSHAIDQDRLSGVSLAGGIITNITHDHLDYHGSLSKYAEVKARI-ANLLQDDAPLVV 242

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFP 305
             DD   + ++          ++VG+  +  +  ++           +S   +      P
Sbjct: 243 NGDDCNIRNLLPHLPP---ETITVGFDKRNSYRIEIQEQTLQGTAFRLSPGTEGAVLRCP 299

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   VYNA  AA L  A G     +   L  L   PGR + V T  +    +VDYAHT
Sbjct: 300 VPGRHNVYNAAFAAVLAQAAGYSLESISAGLASLVPPPGRLQPVET-CQPFSCFVDYAHT 358

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++   L+++R++T GR+I +FG GG+RD+ KRP M + A   ADI ++T DN R E  
Sbjct: 359 PDAIAQTLQSLRSVTKGRLICLFGAGGERDREKRPRMARAAEQ-ADIVVLTADNSRREPT 417

Query: 426 EKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            +I  EI  G     P      +R +AI+ A+++    D +++ GKGHE    +    + 
Sbjct: 418 AQILEEIQAGFSDAAPEVFVNADRSQAIQLAVKLAEPGDCVLILGKGHEKTQEIAGQRRD 477

Query: 482 MSVDCDI 488
                ++
Sbjct: 478 FDDVAEV 484


>gi|309776031|ref|ZP_07671023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916313|gb|EFP62061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 476

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 136/486 (27%), Positives = 230/486 (47%), Gaps = 28/486 (5%)

Query: 15  INQL-SIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +N+L ++  +   + +I   +S D+R ++  W+FV   G+  DG  F+ +A+ +GA  ++
Sbjct: 6   LNELFTLLHIPCEDTRILQGISDDTRDLKKDWLFVCRRGSAYDGATFLQEALDKGAV-VL 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
                  +    T         V+  R+ L       YG     +  + VTGT+GK+SVA
Sbjct: 65  CDEPLKQEHVYYTP-------YVERIRQALLEL---YYGDLCARLHVIGVTGTNGKTSVA 114

Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S + Q+      +  QIG  S        +   TTP    LA         G+THV +E 
Sbjct: 115 SIISQLLAMEDCAVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAVQTGITHVVMEV 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH +DQ+R+  ++     +TN+ +DH+DYH ++  Y   K +L    L  +   I  +D
Sbjct: 175 SSHAIDQNRISFLQFDDIVYTNITQDHLDYHLSRVHYRYTKFKL-RRYLKPQGTIIYNSD 233

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            +Y +E++  A +     +S+G Q     L +V    +   ++  ++G  F         
Sbjct: 234 LSYMQELVNLAQHTC---ISIGMQAAHFPLSEVQLSAH--DLSFHLQGYAFHARLLGMV- 287

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYN   A  +    G     +++  E+L  V GR E +     G  I++DYAHT++++
Sbjct: 288 -NVYNLAEAIVVVHRTGCSYERLVQDCEQLKPVSGRMEVMEVG--GFTIWIDYAHTASAV 344

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + +L    ++  GRI+ + GCGG+RD+ KRP M  IA   +DIA+ T DNPR E    I 
Sbjct: 345 KELLLFANSVKKGRILTILGCGGERDRTKRPQMAAIAAAYSDIAVFTSDNPRGESVADIL 404

Query: 430 AEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            ++        +   NR  AI+  I++    D++++AGKG E   I   G +    D   
Sbjct: 405 QDMKCESFSNAVVFENRYFAIKHTIKVAQNSDIIIIAGKGSEET-ITAFGREYPFSDRSC 463

Query: 489 IREILG 494
           ++E L 
Sbjct: 464 VKERLA 469


>gi|322387431|ref|ZP_08061041.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
 gi|321141960|gb|EFX37455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
          Length = 481

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 130/500 (26%), Positives = 218/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNFNDVTFDSICYDSRKAKDNSLFF-VKGAAFK-KEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI  G    V    Y +         + P++VV++ +K +SL A   YG   E +  LA 
Sbjct: 66  AIEHGLSWYVAEQDYEV---------DIPVIVVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      +T+       + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILNQKHYPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVD 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L    
Sbjct: 177 NGRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---- 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      +I +D  Y   + ++  N          +  F   +    I N +  + S  G
Sbjct: 233 MKNSRAVVINSDMDYFSVLKEQVENQ---------EHDFYGSQSDNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLVGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAT-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLDQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIE-MLNKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R +AI+ A+     + D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIADEISSFIHHPVEKIADREQAIKAAMSVTSQELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   ++    D  +    L
Sbjct: 462 IINGIKEDYPGDAAVAERYL 481


>gi|322391669|ref|ZP_08065137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
 gi|321145480|gb|EFX40873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
          Length = 481

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 127/500 (25%), Positives = 215/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ KD  F E+I+  +     +     + +S DSR  +   +F A  G       ++  
Sbjct: 9   NILKKDGLFREIIDHENYL-YNYTNVTFDSISYDSRKAKENCLFFA-KGAAFK-EEYLVS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P++VV+N +K +SL A   YG   + +  LA 
Sbjct: 66  AISQGLGWYVAEKDYQV---------GIPVIVVNNIKKAMSLIAMVFYGNPQKKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      +T+       +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYQTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS     HR+ G+    G F N+  DHI    H T + YF  K  L E  
Sbjct: 177 NNRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLMEN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ +D  +   + +              +  F   +    I N +    S  G
Sbjct: 236 ---SRAVVVNSDMDHFNLLKEEVEQK---------EHDFYGSQSDNQIKNSKAFRFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + + +   VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAE-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++ +DYAH  +SL  ++  +    +G I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVIIDYAHNGDSLTKLISVVEEHHTGNIALVLGSTGNKGESRRKDFGLLLNKHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   ++   +R EAI+TA+ +     D +++AGKG +   
Sbjct: 402 TTDDPNYEDPRAIADEISSYIEHPVKTIIDREEAIKTAMSITSQPLDAVILAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   +++   D  I +  L
Sbjct: 462 IINGVKEEYPGDAAIAKRYL 481


>gi|115350512|ref|YP_772351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
 gi|115280500|gb|ABI86017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
          Length = 512

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 143/477 (29%), Positives = 222/477 (46%), Gaps = 33/477 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ +D+R ++AG +F+   G   DG     FI  A+A+GA A++          +  +  
Sbjct: 30  QLHADTRSLRAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVAL 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQ 146
                      +     AS  YG   +++LA+  TGT+GK+S   ++             
Sbjct: 87  AV-----PALDQLAGEIASGWYGDPSDSMLAIGVTGTNGKTSCTQWIAAALTALHQPCAV 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G    
Sbjct: 142 IGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFD 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH T  AY  AK +LF         A++  DDA  + ++++      
Sbjct: 202 IAVFTNLTQDHLDYHGTFDAYEAAKAKLFA--WRGLRAAVVNRDDAAGRRLLEKLAGR-V 258

Query: 266 RVLSVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R ++ G          + +    V A        +     D D      G F V N L  
Sbjct: 259 RTIAYGIGDAQAPDADRELVALDVRATATGTAFHLRSSWGDADVEVGTLGAFNVSNLLAV 318

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNI 376
            G  +A  +     +  + +L  V GR + +G    +    + +DYAHT ++LE  L  +
Sbjct: 319 LGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDAL 378

Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I
Sbjct: 379 RPIAAARGGRLVCMFGCGGDRDATKRPLMGVIAERLADEVVVTSDNPRSEDPQRIIDQVI 438

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G+          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 439 AGMTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 525

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 125/478 (26%), Positives = 225/478 (47%), Gaps = 19/478 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KIN +S DSR+     +FV + G   DGH F+ +AIA+GA  +   +A  L++FS    
Sbjct: 41  QKINSISYDSRNAGPQSVFVCMGGENHDGHTFLEEAIAKGAAVLAGENAAILEEFSRKFP 100

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
                L  ++ R FL+  +   +G+  E I  + +TGT+GK++VA+FV+ +    G+ S 
Sbjct: 101 E-LTFLQTEDARAFLAQLSIIFHGRIHEKIHTVGITGTNGKTTVAAFVKSLMTALGIPSG 159

Query: 146 QIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG    +SS        +  TTP    L    +  + +G    ++E SS  ++Q R  G
Sbjct: 160 SIGTNGVLSSMGPVSFVQSTPTTPEASDLHAIFADFAKRGDQLAAMEVSSVAIEQQRTAG 219

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRA 260
           I       TNL  +H+++H+T + Y  AK++LF +       A++  DD     +++K  
Sbjct: 220 INFDVAIHTNLSPEHLEFHKTFENYKQAKLKLFRQ----AKRAVVNLDDEGMGADIIKDF 275

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +             +    +   ++     + +    +    P+ G + V N L A  
Sbjct: 276 QGSLLTYSLKKDSAADVKASNIRVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLLSAIC 335

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G     ++E L ++    GRFE +    R  +I +DYAHT  +L+ +LK  + + 
Sbjct: 336 TAMHLGFTIGQIIEALPRVENPSGRFEVLKEFGR-RKIIIDYAHTPVALKSLLKEAKKLP 394

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
             R+IV+    G RD+ K P M +   + AD  IV+ D+P   DP ++   ++ G     
Sbjct: 395 HKRLIVMITGIGIRDKEKMPQMAQAVENQADQVIVSVDHPGFLDPWEVVGHVMKGFSNPR 454

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +++  R + +  A+ + ++ D++++         IV  GEK    D +II+E  
Sbjct: 455 AGNILQEPTRRDGVLAALSVSDEDDLILLTSGCINGAQIVK-GEKIPHSDKEIIQEFF 511


>gi|225861361|ref|YP_002742870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230737|ref|ZP_06964418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254942|ref|ZP_06978528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503266|ref|YP_003725206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727392|gb|ACO23243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238861|gb|ADI69992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327389716|gb|EGE88061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 481

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 133/500 (26%), Positives = 222/500 (44%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      +T+  +    +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G +H+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      L
Sbjct: 177 NGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + S A+I   D     V+K                 F   +    I N +  + S  G
Sbjct: 232 LMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   ++    D  +    L
Sbjct: 462 IIQGKKESYPGDTAVAENYL 481


>gi|107021633|ref|YP_619960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688578|ref|YP_834201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891822|gb|ABF74987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646667|gb|ABK07308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
          Length = 515

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 146/474 (30%), Positives = 224/474 (47%), Gaps = 24/474 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   F+  A+A+GA A++          +A       
Sbjct: 30  QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVAL 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            +   +  +     AS  YG   +++LAV  TGT+GK+S   ++             IG 
Sbjct: 90  AVPALD--QLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGT 147

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 148 LGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 207

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T  AY  AK +LF         A+I  DDA  + ++++      R +
Sbjct: 208 FTNLTQDHLDYHGTFDAYEAAKAKLFA--WRGLRAAVINRDDAAGRRLLEKLAGR-VRTI 264

Query: 269 SVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           + G          + +    V A        +     D +      G F V N L   G 
Sbjct: 265 AYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVSNLLAVLGA 324

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +A  +     L  +E+L  V GR + +G    +    + +DYAHT ++LE  L  +R I
Sbjct: 325 LLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPI 384

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +++ G+
Sbjct: 385 AAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVVAGM 444

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                     +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 445 TAPDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 497


>gi|260578093|ref|ZP_05846014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603732|gb|EEW16988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
          Length = 536

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 155/527 (29%), Positives = 234/527 (44%), Gaps = 51/527 (9%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   E+       P  W   ++   +  S+ ++ G +F A+ G K  G  F   A    
Sbjct: 4   LKQLAEICGGTLTGP--WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF---AADSK 58

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++  +A   Q       +  P +VVDN RK++   A+ +YG HP   L   G +G S
Sbjct: 59  AAAVLTDAAG--QRIIDDAPTPLPCIVVDNVRKWMGPVAAEVYG-HPARQLKTIGITGTS 115

Query: 128 SVA---SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
                   V++    SGL    IG T T I+       LTTP    L   L+ + ++GVT
Sbjct: 116 GKTTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVT 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-- 241
           H+ +E SSH L   R+ G+     +FTNL +DH+D+H T + YF AK  LFE        
Sbjct: 176 HLVMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVP 235

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVT 292
             A++  +D + + +   A      V      G          +       A + +Q + 
Sbjct: 236 GTAVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIR 295

Query: 293 ISVEG----KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKL--HVVPGR 345
           +S+ G    ++ D+   + G F   N+LVA     A+ G   +     ++ L    VPGR
Sbjct: 296 LSIAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGR 355

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402
            + V    +     VDYAH   +++ +L ++       + RI +V G GG+RD  KR IM
Sbjct: 356 MQLV-EEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIM 414

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----------------GNRI 446
           G+IA +LAD   VTDDNPR E+P  IR  I  G    ++K                 +R 
Sbjct: 415 GRIAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRA 474

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI  A+      D +VVAGKGHE   +V  G+     D + +   L
Sbjct: 475 EAIAAAVTWARPGDAVVVAGKGHEKGQLVA-GKMHPFDDVEELATAL 520


>gi|146329007|ref|YP_001209875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
 gi|146232477|gb|ABQ13455.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
          Length = 482

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 146/501 (29%), Positives = 228/501 (45%), Gaps = 36/501 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF----IPQAI 64
           K   EL+  L +      ++ I+ +S DSR +    +++A  G +     F    I    
Sbjct: 2   KTTHELLTALGLSTAAVDDKPISALSLDSRVLNEQMLWLATRGTQYHALDFYTPEIN--- 58

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
                AI     Y      A        + V+   + +S  A   Y  HP   L +TG +
Sbjct: 59  ---CAAIFYEPPYQNPPPHA--------ITVERLSEKVSAIADLFY-DHPAQKLWITGVT 106

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           G    +S V  I Q +G +         + +  Q    TTP  I   + L++  +QG   
Sbjct: 107 GTDGKSSLVHFIAQATGAAMLGTIGYGNL-NALQPASHTTPDAITTQQQLAHFVAQGNQA 165

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SSH L QHR+  + +    FTNL RDH+DYH   + YF AK +LF   +     A
Sbjct: 166 VAMEISSHALAQHRVAAVAVDVAVFTNLSRDHLDYHADMEDYFLAKAQLFAFPI---KHA 222

Query: 245 IIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHL-------KKVCAIHNKQQVTISVE 296
           +I  DD + + ++     N+   + +V  +G               C   N    T++++
Sbjct: 223 VINIDDPHGRRLISEHRINSSACIWAVSAKGAHNAAAHHNVCAHDYCLHQNGVTFTLAID 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +       L   F + N L  A    A G   A + E L +LH V GR E +  +++  
Sbjct: 283 DETIAVETHLLARFNLDNVLNVAACLAAQGFSLAAIAEKLNQLHGVIGRVEPISLSNQ-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              VDYAHT+ ++E +L  IR   SG++ ++FGCGG+RD+GKR +M + A   AD  IVT
Sbjct: 342 LAIVDYAHTAGAIESVLTGIRPHISGKLWLIFGCGGNRDRGKRALMAQAAERFADAVIVT 401

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DDNPR+EDP  I A+++ G            R +AI  A+  L+  D +++ GKGHE   
Sbjct: 402 DDNPRTEDPAAIIADVMQGFEYPEKIHVIQPREQAIHYALAQLHAGDAVLITGKGHEDYQ 461

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+    K    D  +I+  + 
Sbjct: 462 IIGT-TKYPFSDQAVIKAWIN 481


>gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 506

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 124/479 (25%), Positives = 228/479 (47%), Gaps = 19/479 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I+ V+ DSR +Q    FV I G K DGH F+  AI  GA A++   +  + + +    
Sbjct: 22  RVISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDAIRNGA-AVLAGESAEVLEKAGRKY 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            +   ++V++ R FL+  +   Y +  EN+  + VTGT+GK++V ++V+ +    G  + 
Sbjct: 81  PDRTFILVEDARAFLAQLSILFYKRAHENLTTIGVTGTNGKTTVTAYVKSLLTLLGTPTG 140

Query: 146 QIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG T  ISS      + +  TTP    L         +G     +E SS    Q R++G
Sbjct: 141 SIGTTGIISSTGTINLKKSTPTTPEASDLHYIFDQFKERGDEAAVMEVSSVSTVQKRVEG 200

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I+      TNL  +H+++H+T + Y  AK++LF++       A++  DD+   + + + H
Sbjct: 201 IEFDIAIHTNLSPEHLEFHKTFENYKEAKLKLFKQ----AKKAVVNIDDSGMAKDILKIH 256

Query: 262 NAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +      S+       +    +  I ++    +  + + +    P+ G++ V N L A  
Sbjct: 257 SGDVLTYSLDKRSDADVKASNLRTIGHETFFELKFQKESYIVRAPVIGDYNVANILAAVC 316

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +  G     +L  L  +    GRFE + T     +I +DYAHT  +L+ +L+ ++ + 
Sbjct: 317 TALHSGYSIHQILLALTSIEGPEGRFELL-TEYGNRKIMLDYAHTPAALDNLLREVKKLE 375

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
             R+IV+    G RD+ K P+M +     AD  +V+ D+P   DP++I + ++ G     
Sbjct: 376 YNRLIVLITGIGLRDKSKMPLMAETVEGRADEIVVSVDHPDFNDPDEIISNVLAGFSNPS 435

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                 +  R EA+ +A+ + N+ D++++         IV  G++    D D+I+    
Sbjct: 436 ADNIYTERTRAEAVLSALALSNENDLVLLTSGCINGAQIVE-GKEIPHSDKDLIKSYFN 493


>gi|71066607|ref|YP_265334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
 gi|71039592|gb|AAZ19900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
          Length = 584

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 144/515 (27%), Positives = 226/515 (43%), Gaps = 52/515 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                +   DSR +     F  +  +    +    ++ QA    A  I+          +
Sbjct: 68  NIPFQQFCLDSRQLIRNEAFALLKSHTPNCQKSRDYLYQAANN-AAFILSEIDPLALIAT 126

Query: 84  ATIRSN----------------------TPILVVDNTRKFLSLFASRLYGKHPE----NI 117
             I  +                       P+L V N R FL                  +
Sbjct: 127 GNIPPHANLELTPDNAKYIAQQQLDALPCPVLYVPNIRDFLGSLIQARLQYQQRVTLPTV 186

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           +AVTGT+GK++++  V Q+ Q +G+SS  +G               TT   + + + L  
Sbjct: 187 VAVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRLGALVQASHTTGDTLAVQQFLHQ 246

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE- 235
           +  +G   +++EASSHGLDQ RL G+ +    +TNL RDH+DYH     Y  AK +LF+ 
Sbjct: 247 MGKEGAELLALEASSHGLDQQRLQGMPVSVAIYTNLSRDHLDYHADMAEYAAAKAKLFDK 306

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVT 292
              P  + AII  DD Y++ ++  AH +  +V +               +    +  +++
Sbjct: 307 AHFPDLTHAIINIDDEYAQIMLDTAHASHLKVWTYSLDPSKTATFVAADITPSLHGVEIS 366

Query: 293 ISVEGKD-----FDFLFPLPGEFQVYNALVAAGL----CIAIGIDSALVLEHLEKLHVVP 343
           +  +  D      D + PL G F V N L A           GID   ++  + +L    
Sbjct: 367 LCTDFGDGKVNHLDIVSPLLGRFNVANLLAAIAAAVALGHKTGIDIERIIAVIPQLQGAV 426

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR + V +N   G   VDYAHT ++L  +L +++T   G++  VFGCGGDRD GKRP+M 
Sbjct: 427 GRMQRVPSND--GCFIVDYAHTPDALSQVLASLKTHCKGQLWAVFGCGGDRDTGKRPLMA 484

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNK 458
           +  L  AD  I+T DNPR+EDP  I  ++  G+          +  R  AI  A+     
Sbjct: 485 QAGLAGADKVILTADNPRTEDPNVILQDMQAGMSTEQYQRTHIESARQTAIEYAVSQAAA 544

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            D++V+AGKGHET   + N  +    D  I++  L
Sbjct: 545 DDIVVIAGKGHETYQEINN-IRYDFDDSVILQNAL 578


>gi|282862740|ref|ZP_06271801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282562426|gb|EFB67967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 490

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 150/517 (29%), Positives = 236/517 (45%), Gaps = 51/517 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+      ++         W        + D+  +  G +F+A+ G+ E G    
Sbjct: 1   MKLSELLAGHDHHVLQGDP--ERAWISA---GTAFDADRVTPGSLFIAVPGHVEGGP--- 52

Query: 61  PQAIAQGAEA---------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
                 GA A         ++V +   L         +  ++ V +TR   +L  +R +G
Sbjct: 53  ------GAVAPALARGAAAVMVDADCVLP----AAARDACVVRVADTRTAAALVTARYFG 102

Query: 112 KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP---- 165
           +     +++A+TGT+GK+SV+  V+ + + S  +    G   T  S   D  +  P    
Sbjct: 103 EPGRQMDVVAITGTNGKTSVSYMVESVLRISEGTRA--GVIGTAGSRIGDEPIPMPPSVL 160

Query: 166 ---SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                  L   L  +  +GV  V +EA+S GL  HR+D   +  G FTNL +DH+D H T
Sbjct: 161 TTPETPDLQYLLGCMRDRGVRSVVLEATSMGLLTHRVDRTFVDVGVFTNLSQDHLDDHGT 220

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKK 281
            + Y +AK+RLF+ L      A++  DD     +      A   V +             
Sbjct: 221 MENYRDAKLRLFQGL---CRHAVVNVDDPVGAGIQAMMPGA---VTTYALDAEADYRATD 274

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +       + T+  EG+ +    P PG F V NAL     C  +G D   ++  LE++  
Sbjct: 275 LVVDAAGSRFTLHHEGRKYPAAIPSPGRFSVANALATVAACHVLGHDLTGLVAALERMPQ 334

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGRFE + T + G  + VDYAH+ +SL  +L  +R    GR++ VFGCGGDRD  KR  
Sbjct: 335 IPGRFERLTTAA-GTSVIVDYAHSPDSLNKVLGTVRGFARGRVVTVFGCGGDRDTTKRAE 393

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLN 457
           MG IA   +D+ ++T DNPR EDPE I  ++  GI      +    +R  AI  A+    
Sbjct: 394 MGTIAGTHSDLCVLTSDNPRHEDPEDIMDQVAPGIAVTGTPYERIADRHAAIAFALSAAG 453

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             D++++AGKG E    V +       D   +RE+ G
Sbjct: 454 PDDIILIAGKGSEPHQTVGD-TLIPFSDMATVRELTG 489


>gi|313899192|ref|ZP_07832712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312956015|gb|EFR37663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 468

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 138/481 (28%), Positives = 230/481 (47%), Gaps = 27/481 (5%)

Query: 19  SIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           ++  +   + +I   +S D+R ++  W+FV   G+  DG  F+ +A+ +GA  ++     
Sbjct: 3   ALLHIDCEDARILQGISDDTRDVKKDWLFVCRKGSLYDGAAFLQEALDKGAV-VLCDQML 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
            +Q    T         V+   + L       YG     +  + +TGT+GK+SVAS + Q
Sbjct: 62  PMQHVYYTPH-------VERITQALLEL---YYGDLCTRLHVIGITGTNGKTSVASIISQ 111

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +  G    QIG  S        +   TTP    LA        + +THV +E SSH +
Sbjct: 112 LLKMEGCRVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAHDEKITHVVMEVSSHAI 171

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ+R+  +      +TN+ +DH+DYH T+  Y   K +L    L  +   +  +D +Y +
Sbjct: 172 DQNRISFLHFDDIVYTNITQDHLDYHLTRVHYRYTKFKL-RRYLKPQGTIVYNSDLSYMQ 230

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++  A +A    +S+G Q     L  V    +   ++  ++G DF           VYN
Sbjct: 231 ELVNLAQHAC---ISIGMQAAHFPLHHVELSDH--DLSFRLQGYDFHARLLGMV--NVYN 283

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
              A  +   +G     + +  EKL  V GR E +     G  I++DYAHT+ ++E +L 
Sbjct: 284 LAEAIVVVHRLGFSYERLRKDCEKLLPVSGRMEVMEVG--GFTIWIDYAHTAAAVEELLV 341

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-I 433
              ++  GRI+ + GCGG+RD+ KRP M  IA   +D+A+ T DNPR E  ++I A++  
Sbjct: 342 FANSVKKGRILTILGCGGERDRTKRPAMAAIAAKYSDLAVFTSDNPRGESVDRILADMKC 401

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              P      NR  AI+  I++    D++++AGKG E   I   G++    D   ++E L
Sbjct: 402 ESFPNAAVFENRYFAIKHTIKVAQNSDIIIIAGKGSEET-ITAFGQEYPFSDRSCVKERL 460

Query: 494 G 494
            
Sbjct: 461 A 461


>gi|73542668|ref|YP_297188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
 gi|72120081|gb|AAZ62344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
          Length = 520

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 162/490 (33%), Positives = 229/490 (46%), Gaps = 35/490 (7%)

Query: 33  VSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ D+R +  G +F+A V GN     DG   I QAIA GA AI+  +      F  T   
Sbjct: 32  LTGDTRRLARGDVFLAYVLGNERLSTDGRPHIAQAIAAGAGAILYEADG----FDWTFGD 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L +++  +     A+  YG     +    +TGT+GK+S + ++ ++ Q +G     
Sbjct: 88  TVPHLALNSLHQLAGPIAAGWYGNPARGVAVTGMTGTNGKTSCSQWLARLLQATGTPCAT 147

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T      Q    TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G    
Sbjct: 148 IGTLGTGFPDALQPTGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGLEQERVAGTHFS 207

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNA 263
               TNL +DH+DYH T   Y  AK RLF         A+I  DD   + ++    A  A
Sbjct: 208 VAVLTNLTQDHLDYHGTMAEYEAAKARLFR--WDGLRTAVINRDDGMGRRLLASNGAAIA 265

Query: 264 GCRVLSVGYQ-----------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              V+  G             G+++    V A        I       D   P+ G F V
Sbjct: 266 APHVIEYGIDGPARASISGARGQWLRASGVRATATGTAFHIDGSFGSADVATPMIGAFNV 325

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNSLE 370
            N L   G  +A G+     L  L  L  V GR E  G ++   G    VDYAHT ++LE
Sbjct: 326 SNLLAVLGAALANGVAWDAALAALRALSPVDGRMELFGAHAGQDGPLAVVDYAHTPDALE 385

Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L+ +R +    +GR+  VFGCGGDRD  KRP+MG +A  LAD  ++T DNPRSEDP+ 
Sbjct: 386 KTLEALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGGVAERLADEIVLTSDNPRSEDPQD 445

Query: 428 IRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I   I  G+       +  +R  AI  AI+     DV++VAGKGHE      +G K+   
Sbjct: 446 ILDAIADGMADRARGRQIEDRAAAILYAIKHAAGADVVLVAGKGHEATQE-AHGRKRPFS 504

Query: 485 DCDIIREILG 494
           D + +R  L 
Sbjct: 505 DREHVRLALA 514


>gi|307127738|ref|YP_003879769.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
 gi|306484800|gb|ADM91669.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
          Length = 481

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 133/500 (26%), Positives = 222/500 (44%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      +T+  +    +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G +H+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      L
Sbjct: 177 NGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + S A+I   D     V+K                 F   +    I N +  + S  G
Sbjct: 232 LMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   ++    D  +    L
Sbjct: 462 IIQGKKESYPGDTAVAENYL 481


>gi|68535820|ref|YP_250525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
 gi|68263419|emb|CAI36907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
          Length = 536

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 156/527 (29%), Positives = 234/527 (44%), Gaps = 51/527 (9%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   E+       P  W   ++   +  S+ ++ G +F A+ G K  G  F   A    
Sbjct: 4   LKQLAEICGGTLTGP--WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF---AADSK 58

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++  +A       AT     P +VVDN RK++   A+ +YG HP   L   G +G S
Sbjct: 59  AAAVLTDAAGQRIIDDATTP--LPCIVVDNVRKWMGPVAAEVYG-HPARQLKTIGITGTS 115

Query: 128 SVA---SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
                   V++    SGL    IG T T I+       LTTP    L   L+ + ++GVT
Sbjct: 116 GKTTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVT 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-- 241
           H+ +E SSH L   R+ G+     +FTNL +DH+D+H T + YF AK  LFE        
Sbjct: 176 HLVMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVP 235

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVT 292
             A++  +D + + +   A      V      G          +       A + +Q + 
Sbjct: 236 GTAVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIR 295

Query: 293 ISVEG----KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKL--HVVPGR 345
           +S+ G    ++ D+   + G F   N+LVA     A+ G   +     ++ L    VPGR
Sbjct: 296 LSIAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGR 355

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402
            + V    +     VDYAH   +++ +L ++       + RI +V G GG+RD  KR IM
Sbjct: 356 MQLV-EEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIM 414

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----------------GNRI 446
           G+IA +LAD   VTDDNPR E+P  IR  I  G    ++K                 +R 
Sbjct: 415 GRIAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRA 474

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI  A+      D +VVAGKGHE   +V  G+     D + +   L
Sbjct: 475 EAIAAAVTWARPGDAVVVAGKGHEKGQLVA-GKMHPFDDVEELATAL 520


>gi|223984264|ref|ZP_03634409.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
 gi|223963749|gb|EEF68116.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
          Length = 459

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 144/474 (30%), Positives = 222/474 (46%), Gaps = 31/474 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  +S  ++ I    +FVA+ G++ DG  +     ++G   ++               
Sbjct: 10  TELTALSDRAQEIGRDGLFVALRGDRADGRQWADAVRSRG-GYVLSDQPGERT------- 61

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
                +V  + R    L     Y      +  + VTGT+GKS+V   +  +   +G    
Sbjct: 62  -----IVHPDPRAVYPLLLQAYYDYPALKLTMIGVTGTNGKSTVTQLLYDMLSGAGRRCC 116

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     I    + +  TTP P+ L + L     +G+  V +E SS  L  HR+DG+  
Sbjct: 117 LIGTGRIVIGDEVRFSPNTTPDPLTLTRLLDEAVRRGIDTVIMEVSSQALAMHRVDGLLF 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL +DH+DYH+T +AY  AK  LFE+L  K   AI+  DD  ++  + + H   
Sbjct: 177 DLAVLTNLKQDHLDYHKTLKAYQRAKFMLFEKLKEK-GTAILNQDDPVTQRWLSQLHRP- 234

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V + G       +  V        +T  + G       PL G F + N   A     A
Sbjct: 235 --VFTYGRDSVNFRIHPVAETL--DSITFDLNG--HRVEAPLAGAFNMRNLTAALACGFA 288

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-- 382
           + I  A +LE      +  GR E V    +     VDYAHT+++LE +LK+ R +     
Sbjct: 289 LDIPWAAMLEFAHHAALPEGRMEIVC--RQPVLAVVDYAHTASALEAMLKHWRKVADQRH 346

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            R+ VVFGCGGDR+  KRP+MG+IA   AD  ++ DDNPR+EDP++I A+I  G  G  +
Sbjct: 347 TRLSVVFGCGGDREADKRPLMGRIACAYADQVVLCDDNPRTEDPDRILAQIAAGCDGSQK 406

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +R EAI+  ++     D++VVAGKG ET  ++ +  K    D  +I    G
Sbjct: 407 IIRDRAEAIKFVLDGAQTDDIIVVAGKGGETS-LIQDTAKTCPNDRLLIERYFG 459


>gi|42526337|ref|NP_971435.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
 gi|81570342|sp|Q73PH4|MURE_TREDE RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|41816449|gb|AAS11316.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
          Length = 532

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 135/527 (25%), Positives = 218/527 (41%), Gaps = 49/527 (9%)

Query: 9   KDFPELINQLSIFPMQWRERK-INEVSSDSRHI-----------QAGWIFVAIVGNKEDG 56
           K   E I  + +      ++  IN V  DSR +           + G  F A+ G   DG
Sbjct: 5   KSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDG 64

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             FI  AI  GA  I         D +         + V++ RK +S  ++ LY +    
Sbjct: 65  KKFINSAIENGAVCIFYE-----GDLNNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRT 119

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTT-PSPIYLA 171
           +  + VTGT GKSS  SF+ Q+    G  +        S   +   +    T P    + 
Sbjct: 120 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNVVQ 179

Query: 172 KALSYLSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             L+ +   G ++  VEASSHGL     RL+ +   AG F N+ ++H+++H T + Y   
Sbjct: 180 LRLAQMRDSGCSYAVVEASSHGLSPKTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 239

Query: 230 KMRLFEELLPKESPAI-----IYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIH 278
           K  LF  L             +  +D  +   M+          +         + K + 
Sbjct: 240 KANLFRALDKNPGKGFPIFGIVNYEDPSAPYFMEATQKNVYPFSTELKDLKKIEEYKGLF 299

Query: 279 LKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEH 335
            K +    +  + T+      K++     L G F V N L     +    G+D A ++E 
Sbjct: 300 AKDIEESSSGIKFTLCDFSSRKEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEK 359

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGG 392
           L  +  V GR   +    +   + +DYAHT +S   I  +I+     + G++I +FG GG
Sbjct: 360 LPLVKPVKGRMMLID-EGQDFEVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSGG 418

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRI 446
           +RD  KRP  G+IA   +DI I+ D++PR ED  ++   I  G P            +R 
Sbjct: 419 ERDVKKRPEQGRIAALYSDIVILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIPDRP 478

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            AI+ A  +  K D +++ GKGHE   I  +       +    R++L
Sbjct: 479 SAIKKAFSLAGKNDAVLLLGKGHENSIIFKDRTMPY-DEETTARKLL 524


>gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
 gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
          Length = 487

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 142/472 (30%), Positives = 221/472 (46%), Gaps = 14/472 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +  ++  DSR ++ G  FVA+ G++ DG  FI  AIA GA       A +  D     R
Sbjct: 18  VEFQQLVLDSRRVRPGDCFVAVAGHQVDGRDFIDSAIALGAV---AVLADADADGRQADR 74

Query: 88  SNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   ++ V N  + LS  A           ++ VTGT+GK++V     Q+    G  +  
Sbjct: 75  NGVIVVGVHNLSQRLSALALRAYPAATRPTLIGVTGTNGKTTVTQLCAQLLTALGHQAGV 134

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +      +  TT   I +A+ L   +  G   V++E SSHGL Q R+  + + 
Sbjct: 135 MGTVGNGLWGDLIPSVNTTSDAITVARELDRQAKSGAEAVALEISSHGLSQSRVAALPVQ 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAH 261
            G +TNL RDH+DYH    AY +AK +LF   LP     +   DD     + +E+     
Sbjct: 195 VGVYTNLSRDHLDYHGDMAAYADAKRQLFA--LPGLRHGVFNLDDETGSRWHRELSGSLL 252

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G  +      G ++ ++ V       +  +           PL G F + N L A G 
Sbjct: 253 ALGYSIQGARCDGAYLTVEGVEYHDQGVRARVVSSFGQGTLNSPLLGAFNLANLLAALGA 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G   + +L  + +LH   GR E  GT+S    +  DYAHT ++L   L  +R    
Sbjct: 313 LLSLGYSLSDLLSVVPQLHSAAGRMECFGTDSTPTLVV-DYAHTPDALSQALAALRPHCR 371

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           G +  VFGCGG+RD GKRP+M + A   AD  I+T DNPRSE    I A++  G+ G  E
Sbjct: 372 GALWCVFGCGGERDSGKRPLMAQAAEQGADHLIITADNPRSEAFADIAAQMEAGLTGQAE 431

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              +R  A+R A       D++++AGKGHE   I+         +  + +++
Sbjct: 432 VIEDRAAAVRRAFAQAQPGDMVLLAGKGHEDYQIIGGNRLDY-NERALAQQL 482


>gi|170731878|ref|YP_001763825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815120|gb|ACA89703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia cenocepacia
           MC0-3]
          Length = 515

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 146/474 (30%), Positives = 224/474 (47%), Gaps = 24/474 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R ++AG +FVA   +  D   F+  A+A+GA A++          +A       
Sbjct: 30  QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVAL 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            +   +  +     AS  YG   +++LA+  TGT+GK+S   ++             IG 
Sbjct: 90  AVPALD--QLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVIGT 147

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +      +  TTP    L ++L+ L   G   V++E SSH L Q R +G       
Sbjct: 148 LGTGMPGQLVPSGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRANGTAFDVAV 207

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T  AY  AK +LF         A+I  DDA  + ++++      R +
Sbjct: 208 FTNLTQDHLDYHGTFDAYEAAKAKLFA--WRGLRAAVINRDDAAGRRLLEKLAGR-VRTI 264

Query: 269 SVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           + G          + +    V A        +     D D      G F V N L   G 
Sbjct: 265 AYGIGDAPAPDADRELVALDVRATVTGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGA 324

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +A  +     L  +E+L  V GR + +G    +    + +DYAHT ++LE  L  +R I
Sbjct: 325 LLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPI 384

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +++ G+
Sbjct: 385 AAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVVAGM 444

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                     +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 445 TAPDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 497


>gi|145588350|ref|YP_001154947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046756|gb|ABP33383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 516

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 149/498 (29%), Positives = 222/498 (44%), Gaps = 40/498 (8%)

Query: 33  VSSDSRHIQAGWIFVAIV-GNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           V +DSR IQ+G IF A   G+     DG  FI  A+A GA A+V   A     F    + 
Sbjct: 26  VGADSRQIQSGDIFFAYPVGHGAALRDGRQFIEAALANGAAAVVFDPAGIDPQFQDHPQ- 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 V++  + +  F ++ Y    +   ++ VTGT+GK+S+  ++ Q        +  
Sbjct: 85  ---CFAVESLAEKVGEFCAQWYDYPSKQLKVIGVTGTNGKTSITQWLAQALDEPNHRTAV 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   T   +       TTP    L   L  L   G   V++E SSH L Q R+ G    
Sbjct: 142 LGTLGTGFPTALVMTGYTTPDAPKLQTQLRELLDGGAQQVAMEVSSHALHQERIAGTWFN 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAG 264
              FTNL +DH+DYH +   Y  AK +LF++   +   A+I  DD + +E+         
Sbjct: 202 CAVFTNLTQDHLDYHGSMGDYAEAKAKLFQQAGLE--HAVINLDDPFGRELAINLLAKDS 259

Query: 265 CRVLSVGYQGKFI-------------HLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEF 310
            +V + G                   + +         Q T     K  +    PL GEF
Sbjct: 260 IQVWAYGLAPTAFKGFEKFASRLQRIYTQDTVLSGATYQTTFVYGDKGTYPLHIPLLGEF 319

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR----GGRIYVDYAHTS 366
            + NAL    + +  G+      + +  L  V GR E +         G    VDYAHT 
Sbjct: 320 NLSNALAVWTVLLTQGLSPEEATKRVSHLSPVSGRMELIPLGKNQKSEGLLAVVDYAHTP 379

Query: 367 NSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++L+  L+ +R +     G++  VFGCGGDRD  KRP MG +A   AD  I+T DN RSE
Sbjct: 380 DALQKTLQALRPLAEQRGGKLWCVFGCGGDRDITKRPQMGLVAEKFADHIIITSDNSRSE 439

Query: 424 DPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I   I  G+           +R  AI  A+   + +D+++VAGKGHET   + NG+
Sbjct: 440 DPQAIIQMIADGLNPSTTNVQMIADRAAAIMAAVRHADARDIVLVAGKGHETSQEI-NGK 498

Query: 480 KKMSVDCDIIREILGLIL 497
                D + IR   G ++
Sbjct: 499 TFDFSDQEHIRLAAGGLV 516


>gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
 gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
          Length = 486

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 142/515 (27%), Positives = 233/515 (45%), Gaps = 55/515 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKE-- 54
           M L++L              F ++    ++  ++ DSR ++ G++FVA++G    +++  
Sbjct: 1   MTLEELFAP-----------FGLKAPPLRVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPL 49

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DGH FIP+A+A+GA A+V     SL           P L V + R+ L+  A   +G+  
Sbjct: 50  DGHDFIPEALAKGAIAVVGERELSLP---------VPYLRVGDAREALAHLARHFFGEPD 100

Query: 115 ENI--LAVTGTSGKSSVASFVQQICQRSGLSSF---QIGPTSTISSFAQDNRLTTPSPIY 169
             +  L +TG+ GKS+ AS +  + Q     +     +G      +       TTP    
Sbjct: 101 RKLALLGITGSKGKSTTASLLHHLLQAGEKPAALLSTVGLRLGEEARPNIGHFTTPEAPQ 160

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-HIDYHQTQQAYFN 228
           +   L     +G+    +E SSH L   R++G+    G F +   D H+D H T +AYF 
Sbjct: 161 VYGFLREAVERGLEAAVLEVSSHALALKRVEGLSYRIGVFVSFYPDDHLDLHGTAEAYFA 220

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  L E        A++     + K ++ R H      L  G  G+             
Sbjct: 221 AKALLVER----SHLAVLNTRLPHLKRLLPRPH------LLFGPGGEVWGEGLREGEEGL 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            + T+       +   P+ G + + NAL A+   +A G+    VL+ L     VPGR E 
Sbjct: 271 -RFTLHTPWGSGEAFLPMLGRYNLDNALAASAAALAYGLSLERVLQGLATFRGVPGRMEV 329

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +  R+ +D+AHT  SLE  LK +R  T GR+++V G  G+RD  +R  +G++A  
Sbjct: 330 V--QRKPFRVVIDFAHTGKSLEEALKTLRATTRGRLLLVVGAAGERDPRRREDIGRVAAR 387

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           LAD    T+++ R+ED + I   +          +    +R EAI  A+    + D +++
Sbjct: 388 LADKTFFTEEDHRTEDLQAILEALAKAAREEGGLYELIPDRKEAIFCALSEAREGDTVLL 447

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIR----EILGL 495
           AGKGHE  H +  G   +  D   +     + LGL
Sbjct: 448 AGKGHE--HTLERGTLALPWDEKAVALEGLKALGL 480


>gi|172058185|ref|YP_001814645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990706|gb|ACB61628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 489

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/488 (26%), Positives = 220/488 (45%), Gaps = 26/488 (5%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+ K   ELI    +         I  +++DSR +  G +++ + G   DGH +  +A+
Sbjct: 2   NLLDKHLSELIAPFHLTCE--VNPSITGIATDSREVTKGCLYICVRGYTVDGHQYAEEAV 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA AI+        +         P++++ +T+      A   Y      +     T 
Sbjct: 60  ANGAVAILAEEPIDGVE--------VPVVLLQDTKHAAGKVADLFYDHPSHKLKVYGITG 111

Query: 125 GKSSVASFV--QQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
                 +      + + +G  +  I      I     D   TTP  I L + L  +  QG
Sbjct: 112 TNGKTTTTKLTYDLFRAAGQKAGMISTIGAMIDGEMIDTPNTTPEAIILHRLLYQMVEQG 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           VT   +E SSH L + R++G+K  A +FTNL  DH+DYH + + Y  AK  +F+++    
Sbjct: 172 VTDCVLEVSSHALMEGRVEGVKFHAAAFTNLTHDHLDYHASMEEYAQAKALVFKQVATSG 231

Query: 242 SPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             A+I    D  S+ + K A           Y  K +    +     ++ V++ ++G   
Sbjct: 232 GQAVILNEADPKSRVMEKAAEGVPVIW----YATKALSEAPITVEWKEETVSVRIDGTVT 287

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G+F   N   A GL  A  ++   ++ H+ +L +  GR E +     G  +Y+
Sbjct: 288 EVPVFLLGDFNAANLAAAIGLMQAGNVNMYQLIRHIPELRLPKGRLEQIPFE--GCEVYI 345

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + LE  LK + ++    + +V    G+RD+ KR +MG+IA    +  IVT  +P
Sbjct: 346 DYAHTPDGLEKCLKAL-SVPGEPLYMVLSAAGERDRSKRAVMGRIAGQYCEGIIVTVHDP 404

Query: 421 RSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R E P++I  E++  IP         +R EA++ A ++      +V+ GKGHE    +  
Sbjct: 405 RREQPQQIIKELLVEIPPRKIITCHESRKEALQIAAKVALTGKRMVIVGKGHERFEQI-- 462

Query: 478 GEKKMSVD 485
           G + +  D
Sbjct: 463 GTEHVPFD 470


>gi|225021921|ref|ZP_03711113.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945308|gb|EEG26517.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 497

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 157/494 (31%), Positives = 237/494 (47%), Gaps = 18/494 (3%)

Query: 10  DFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           D  +LI   +     +  +  I EV  +S  + AG +F A+ G +  G      A    A
Sbjct: 7   DVAQLIGARMQGGTAEQAQVPITEVGLNSAELPAGALFAAVPGTRVHG---ARFAADTAA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            AI+   A       +      P+LVVD+ R  L + A+ +YG     +  + +TGTSGK
Sbjct: 64  AAILTDEAG--WGLLSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ +  ++     +G     IG T T I+       LTTP    L      + ++GVTHV
Sbjct: 122 TTTSYMLEAGLLAAGYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHV 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPA 244
            +E SSH L   R+ G+K     FTNL +DH+D+H T   YF+AK   F    P + + A
Sbjct: 182 VMEVSSHALMLGRVLGVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARA 241

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFL 303
           ++  DD + +++     +    + + G  G +            Q+  ++   G      
Sbjct: 242 VVCVDDEWGEKMASVFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFQLAAPSGSVVAAT 301

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG F V NA +A  L   +G+D   +L  L  +  VPGR E V    +     VDYA
Sbjct: 302 VPLPGRFNVANAALALALADTVGVDMTALLPGLAGV-GVPGRMEVVDC-GQDFLAVVDYA 359

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +++ +L  +R   +GRI +V G GGDRD  KRPIMG  A   AD  +VTDDNPR+E
Sbjct: 360 HKPAAIKAVLATVRGQITGRIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNE 419

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP  IRA+++ G        +E G+R  AIR  +      D +++AGKGHE   ++ +G 
Sbjct: 420 DPAAIRAQVLAGTAAGSAEVVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI-DGV 478

Query: 480 KKMSVDCDIIREIL 493
                D + +R  L
Sbjct: 479 THHFDDREELRAAL 492


>gi|306829834|ref|ZP_07463021.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427845|gb|EFM30938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
          Length = 481

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 132/500 (26%), Positives = 224/500 (44%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K+  F E+INQ S +   + +   + +S DSR ++   +F  + G       F+  
Sbjct: 9   NILKKNGLFREIINQGSYY-YNYSDVDFDSISYDSRKVKERSLFF-VKGASFK-KEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG +  +    Y +           P ++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AISQGLDWYIAEQDYEV---------GIPAIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      +T+       + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVH 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      L
Sbjct: 177 NGRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + S A++   D     V+K              +  F   +    I N +    S  G
Sbjct: 232 LMENSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGNQSSNQIENSKAFGFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R +AI+ A+ + +++ D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIAEEISSYISHPVEKIADREQAIQAAMAITDQELDAVIIAGKGADRYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  +    L
Sbjct: 462 IVNGVKESYPGDAAVAERYL 481


>gi|320335408|ref|YP_004172119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
 gi|319756697|gb|ADV68454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
          Length = 486

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 140/512 (27%), Positives = 227/512 (44%), Gaps = 45/512 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL          +L++ P       +  V+  +  ++ G+ FVA+ G + DGH F+
Sbjct: 1   MKLHDLAA--------ELNLTPPA-ENPDVTGVTHHAGWVRPGFAFVAVRGARVDGHAFM 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A A GA  +              + S  P + V   R  L+  A+ L G       ++
Sbjct: 52  AEAAANGAVCVFGE------GLPDGVPSPLPYVRVPGARAALADAAAALAGHPSRALRVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYLA 171
            +TGT GK++ +   + + + +G+ +   G  ST+                TTP    + 
Sbjct: 106 GITGTDGKTTTSWITRHLLRAAGVRT---GLLSTVGYELPDGALRHFPAHFTTPEAPEVQ 162

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS + + G   V +EASSH L   R+  +      +T+L  +H+D+H T + YF  K 
Sbjct: 163 STLSEIGASGGEAVVLEASSHALALDRVRAVDWDVAVWTHLTSEHLDFHGTVEQYFADKA 222

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290
           RL E        +++ ADD ++ ++  RA       ++ G +         +        
Sbjct: 223 RLVER----ARFSVLNADDPWTAQLRPRAAAY----VTYGVEDVADWRAGDIEERSTGLH 274

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     +FD   P+ G F V+NAL A      +G     ++  L     VPGR E V 
Sbjct: 275 FHVLSPLGEFDAHLPMVGRFNVHNALAAMAAAAHLGSGVDALVAGLASFRGVPGRMELVP 334

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQGKRPIMGKIALDL 409
               G R+ VD+AHT  SLE  L+ +R+ T GR+IV+    GG RD GKR  +G++A  L
Sbjct: 335 GGDAGVRVVVDFAHTPPSLEKALEALRSTTRGRLIVLLGSAGGPRDPGKRAPLGEVATRL 394

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD AI T+++ R    + I  E+  G        F    +R +AIR A+ +    D +++
Sbjct: 395 ADTAIFTEEDHRDTPLDDILQEMARGAREAGRGNFELVPDRRDAIRRAVALARPGDTVLL 454

Query: 465 AGKGHETVHIVTNGEKKMSVD-CDIIREILGL 495
           AGKG E    +  G + +  D     R  L +
Sbjct: 455 AGKGPEDT--LERGAETLPWDEVAEARAALAV 484


>gi|227503275|ref|ZP_03933324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075778|gb|EEI13741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 511

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 238/480 (49%), Gaps = 23/480 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +++    DS  +  G +F A+ G +  G  F+       A A++  +     D      
Sbjct: 22  VEVSACGLDSASLPEGALFAALPGTRVHGAQFVGDTK---AGAVLTDAPG--LDHLRQAN 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              PI+VVD+ R  L   A+ +YG    ++  L +TGTSGK++ +  ++    ++G S  
Sbjct: 77  ETRPIIVVDDIRAVLGPIAAEIYGHPTRDLTVLGITGTSGKTTTSYLLEAGLLQAGHSVG 136

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG T T I+       LTTP    L +  + +  +GVTHV +E SSH L+  R+ G   
Sbjct: 137 LIGTTGTRINRTPVPTSLTTPEAPRLQELFARMKEEGVTHVVMEVSSHALELGRVRGTNF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               F+NL +DH+D+H T + YF+AK RLF         A+I  DD + + +     +AG
Sbjct: 197 AVAGFSNLSQDHLDFHPTMEEYFSAKSRLFLG-EQAAQRAVICVDDEWGERLRGMVKDAG 255

Query: 265 CRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             V +V            +        Q+V ++++G D+ F  PLPGEF + NA +A G+
Sbjct: 256 APVTTVATRTGDATISARQTATEATGAQEVDLNLDGTDYSFRLPLPGEFNIANAALALGM 315

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---T 378
             A+G D  + L  +E +  VPGR E +    +     VDYAH   ++  +L  +R    
Sbjct: 316 ATAVGEDPQVFLTGVENV-AVPGRMERID-RGQDFVAVVDYAHKPAAIAAVLDTLRLQLE 373

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
            TSGR+ VV G GGDRD  KRPIMG+ A   AD+ +VTDDNPR+EDP  IRA +I G   
Sbjct: 374 GTSGRVGVVVGAGGDRDSTKRPIMGEAAATRADLTVVTDDNPRTEDPAAIRAAVIEGARR 433

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                   E+G+R  AI   ++     D ++V GKGHE   +V           ++ R I
Sbjct: 434 AAPDADIREQGSRARAIDEVVDWAQPGDAIIVVGKGHEVGQLVGERTLHFDDREEMARAI 493


>gi|168487500|ref|ZP_02712008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569676|gb|EDT90204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 481

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 135/501 (26%), Positives = 219/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLVWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|221232241|ref|YP_002511394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225854970|ref|YP_002736482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae JJA]
 gi|220674702|emb|CAR69275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225723162|gb|ACO19015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae JJA]
          Length = 481

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 135/501 (26%), Positives = 219/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVK--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|291563560|emb|CBL42376.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SS3/4]
          Length = 484

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 127/487 (26%), Positives = 211/487 (43%), Gaps = 37/487 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ ++EV  DSR  +   +FV I G+  D H FIP  +  G +         + +    +
Sbjct: 11  DQNVDEVIYDSRKARPDSVFVCIQGSTRDSHEFIPDVLRAGCK-------VLVVEKEVEV 63

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASFVQQICQRSGLSS 144
            ++  ++ V++ R  L+  ++  +G   E ++ +  T  K     +  ++ + + +G  +
Sbjct: 64  PADVTVIRVESGRLALAELSAARFGYPAEKLITIGITGTKGKTTTSYMIKAVLEAAGKKT 123

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     I         TTP    +      +   G     +E SS  L  HR+ GI 
Sbjct: 124 GLIGTNGAVIGDVKFPTSNTTPESYVVQDYFHKMVEAGCECCVMEVSSQALMLHRVGGIM 183

Query: 204 LIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
              G FTN+  DHI    H++ + Y   K RL    L      I+     +  EV+K A 
Sbjct: 184 FDYGLFTNISPDHIGPKEHKSFEEYLFYKSRL----LTVCKTGIVNRLTDHYDEVVKDAT 239

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGK-DFDFLFPLPGEFQVYNA-- 315
              CR+L+    G    +         H+   +  S+ G  D      +PG+F   NA  
Sbjct: 240 ---CRLLTYALNGNADFMGDDIHYASNHDFVGIEFSIHGMLDGRVRVGMPGKFNADNALA 296

Query: 316 ---LVAAGLCIAIGIDSALVLEH-LEKLH--VVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              +    L    G+      +  L  L    V GR E    + +   + VDYAH + S+
Sbjct: 297 ALAVCTLALSGGSGVLDDHTKQAILGSLVKVRVDGRMEIAHVSKK-CSVIVDYAHNAVSM 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L  +R     R++ VFGCGG+R + +R  MG+I   +AD+ I+T DNPR E  E I 
Sbjct: 356 ESLLTTLRDYHPKRLVCVFGCGGNRARDRRYSMGEIGGKMADLCIITADNPRFEKNEDII 415

Query: 430 AEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            +I  G+      ++   +R EAI  AI    + D++ + GKGHE    +  G K   +D
Sbjct: 416 KDIEVGLAKTDGTYLVIPDRQEAIFYAIRNAEEGDMIAIIGKGHEDYQEIE-GVKHHFLD 474

Query: 486 CDIIREI 492
            +++ E 
Sbjct: 475 REVVEEA 481


>gi|148984878|ref|ZP_01818131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922900|gb|EDK74016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800363|emb|CBW32994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae OXC141]
          Length = 481

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 135/501 (26%), Positives = 219/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLCLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|149011768|ref|ZP_01832964.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684487|ref|YP_001836234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303255316|ref|ZP_07341386.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|303260157|ref|ZP_07346129.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262547|ref|ZP_07348488.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303264949|ref|ZP_07350864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|303267258|ref|ZP_07353122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|303269569|ref|ZP_07355332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|147764199|gb|EDK71131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629821|gb|ACB90769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802248|emb|CBW35000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV200]
 gi|302597684|gb|EFL64760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|302636264|gb|EFL66758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638654|gb|EFL69117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302640913|gb|EFL71297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|302643223|gb|EFL73506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|302645468|gb|EFL75700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|332073868|gb|EGI84346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 481

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 135/501 (26%), Positives = 219/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 481

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 132/493 (26%), Positives = 223/493 (45%), Gaps = 36/493 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F E+I++   F   +R     ++S DSR + A  +F  + G+      F+ +A+  G +
Sbjct: 16  NFREIIDKGQYF-YHYRNLVFEKISYDSREVDASTLFF-VKGDNFK-KEFLEKAVESGLQ 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
             V  + + +           P+++V++ ++ +SL A   YG   + +  LA TGT GK+
Sbjct: 73  FYVSETDFEVT---------IPVILVNDVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A F   I Q+S   +      +T+       + LTTP  + L K ++     G TH+ 
Sbjct: 124 TSAYFAYHILQQSHKPALLSTMNTTLDGEHFFKSTLTTPESLDLFKMMATAVENGRTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS    + R+ G+    G F N+  DHI    H T + YF  K      LL + S A
Sbjct: 184 MEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMENSRA 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++   +    EV+     +         +  F        IH+ Q  +    G     F 
Sbjct: 239 VVVNSEMDHFEVLAEQVASM--------EHDFYGQHSDNQIHHSQAFSFETSGILTEKFD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F   NAL A+  C+ +G   + + + +     VPGR E V T   G +++VDYA
Sbjct: 291 IQLIGRFNQENALAASLACLRLGATISDIKKGIAA-TRVPGRME-VLTQQNGAKVFVDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRS 422
           H   SL  +L  ++    GRI++V G  G++ + +R   G +     ++  I+T D+P  
Sbjct: 349 HNGVSLANLLSVVQEHQKGRIVLVLGATGNKGESRRKDFGLLINQHPELMVILTADDPNY 408

Query: 423 EDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEK 480
           EDP  I  EI   I   ++   +R EAI+ A+ +   K D +++AGKG +   I+   + 
Sbjct: 409 EDPIAIAKEIASYISFDVDMIADREEAIKKALGLTSKKGDAVILAGKGADCYQIINGKKA 468

Query: 481 KMSVDCDIIREIL 493
               D  I  + L
Sbjct: 469 NYPGDYAIAEKYL 481


>gi|251781849|ref|YP_002996151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242390478|dbj|BAH80937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 481

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 218/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ KD  F E+++    +   ++      +S DSR +    +F A  G       ++ +
Sbjct: 9   NILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADYLKE 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AIA+G    V    Y L         + P+++V + +K +SL A   Y    +   +L  
Sbjct: 66  AIAKGLPLYVSEVDYKL---------DIPVVLVTDIKKAMSLIAMAFYDNPQDQLKLLGF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I + S   +      +T+       ++LTTP  + L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILKESYKPALLSTMNTTLDGQTFFKSQLTTPESLDLFAMMAECVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L E  
Sbjct: 177 NGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMEN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +I +   +   +  +  N          +  F        I   Q  +    G
Sbjct: 236 ---SRAVVINSGMDHFPFLANQVANQ---------EHAFYGALSDNQITTSQAFSFEANG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE +L  +    +G ++++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRADFGAVINQHPNLTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDPE I  EI   I   I+   +R +AI+ A+ +    +D +++AGKG +   
Sbjct: 402 TADDPNFEDPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPEDAVIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  + +  L
Sbjct: 462 IVKGEKAPYAGDLAVAQRYL 481


>gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
 gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
          Length = 514

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 137/510 (26%), Positives = 230/510 (45%), Gaps = 35/510 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +++ K    +I ++        E +I  ++ DSR + + ++F A+ G   DG  FI  
Sbjct: 14  LNNILSKLDKNMIKEV----RGSCEVEILGLTYDSRCVLSRFVFFALPGLHFDGQKFIES 69

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENI--L 118
           AI QG+  IV ++     D       N   + +D  N ++F+S F+   Y +  + +  +
Sbjct: 70  AIQQGSNVIVHTNDIDSYD------PNVTYIKIDACNIKRFMSNFSHIFYDEPSKKLKII 123

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKAL 174
            VTGT GKSSV  ++  + +  G+    I        + +      R +TP    +   L
Sbjct: 124 GVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIHLVL 183

Query: 175 SYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           S +    V +  VE++SHGLD    RL  I       TN+  +H+++H T Q Y NAK+ 
Sbjct: 184 SKMVENNVEYAIVESTSHGLDARTSRLIDISYSVAVLTNISHEHLEFHGTMQHYLNAKLN 243

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQ 290
           LF          I+  DD      +    NA  RV +   + K     + K+       +
Sbjct: 244 LFSSADANGGFGIVNMDDNNFSVFL----NAINRVYTYSLENKNADFFVSKINEQMGFIE 299

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFV 349
                +   +D    L G F V N + A  +    + I  + ++E L  +  + GR + V
Sbjct: 300 FEFYHKDVKYDARVNLTGSFNVENVMAALIVVSQVMNIHISELIEKLVNVEGLCGRMQGV 359

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + +DYAHT  +   I    + +   R+I VFG  G+RD  KR + G+IA   
Sbjct: 360 DF-GQDFSLIIDYAHTPGAFLKIFPMFKRLAKNRLISVFGSAGERDTFKRKLQGEIADRY 418

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLV 463
           +DI I+ D++PRSED  +I  +I  GI G           +R  AI  A+++    D++V
Sbjct: 419 SDIIILCDEDPRSEDSMQIIRDIAEGISGKTLNKDLFFIPDRRSAIEKAVDIAYAGDLVV 478

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             GKGHE+  I  +       +  +I++I+
Sbjct: 479 TLGKGHESSIIYED-RSIFWDEQAVIKDII 507


>gi|15901375|ref|NP_345979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658373|ref|ZP_01409060.1| hypothetical protein SpneT_02000452 [Streptococcus pneumoniae
           TIGR4]
 gi|21362711|sp|Q97PS1|MURE_STRPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14973020|gb|AAK75619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 481

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 132/501 (26%), Positives = 220/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K  L E 
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME- 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K    II +D  +   + ++  +         +  +         I N +  + S  
Sbjct: 235 ---KSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQ---------IENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
 gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
          Length = 508

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 131/510 (25%), Positives = 225/510 (44%), Gaps = 35/510 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++++    LI ++    +   E +I  ++ DSR +   ++F A+ G   +G  FI  
Sbjct: 8   LNDVLFRLNQNLIQKI----IGSCEVEILGLAYDSRCVSFNFVFFALPGLHFNGQKFIES 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENI--L 118
           AI +G+  IV ++     D      SN   + VD  N ++F+S FA   Y +  + +  +
Sbjct: 64  AIQRGSNVIVHTNDIDFYD------SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKII 117

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKAL 174
            VTGT GKSSV  ++  + +  G     I                 R +TP    +   L
Sbjct: 118 GVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVFLEDGSGTLVKNPYRQSTPESTEIHLVL 177

Query: 175 SYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           S + +  V +  +E++SHGLD    RL  I+      TN+  +H+++H T Q Y  AK+ 
Sbjct: 178 SKMVANNVEYAIIESTSHGLDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLN 237

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQ 290
           LF          II  DD +    M    N+  R  +   +       + K+       +
Sbjct: 238 LFYSANFHGGFGIINMDDNHFSVFM----NSINRTYTYSLKNEKADFFISKINEQMGFTE 293

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFV 349
                    +     L G F V N + A  +    + +D + ++  L  +  + GR + +
Sbjct: 294 FEFYHNKIKYAARVNLTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQDI 353

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT  +   +    + +   R+I VFG  G+RD  KR + G+IA + 
Sbjct: 354 NF-GQDFSLIVDYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEY 412

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +D+ I+ D++PR ED  +I  +I  GI             +R  AI  AI +    D++V
Sbjct: 413 SDVIILCDEDPRGEDSMQIIRDIAEGIVTKTLNKDLFFIPDRKCAIEKAINIACSDDLVV 472

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             GKGHE+  I  +       +  +I++I+
Sbjct: 473 TLGKGHESSIIYKDKSI-FWDEQAVIKDII 501


>gi|312868464|ref|ZP_07728664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
 gi|311096209|gb|EFQ54453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
          Length = 481

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 134/495 (27%), Positives = 218/495 (44%), Gaps = 38/495 (7%)

Query: 9   KDFPE-LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           ++F E L+N    + ++      + +S DSR I A  +F  + G       ++ QAI+ G
Sbjct: 15  QNFREVLVNGEYYYHLEG--TSFDAISYDSRKISASTLFF-VKGANFK-KEYLEQAISNG 70

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
               V    Y +           P ++V++ ++ +SL A   YG   +   +LA TGT G
Sbjct: 71  LGFYVSEKDYEV---------GIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTH 184
           K++ A F   I ++S   +      +T+          TTP  + L   ++   +   TH
Sbjct: 122 KTTAAYFAYHILKQSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAEAVANDRTH 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H T + YF  K      LL K S
Sbjct: 182 LIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMKNS 236

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
            A++   D     V+K              +  F   +    I N +  + S  GK   D
Sbjct: 237 QAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSENQIENSKAFSFSATGKLAGD 288

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G F   NA+ A   C+ +G     + + + K   VPGR E V T   G ++++D
Sbjct: 289 YDIQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRME-VLTQKNGAKVFID 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNP 420
           YAH  +SL+ +L  + T  +G I +V G  G++ + +R   G +  D  +I   +T D+P
Sbjct: 347 YAHNGDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDP 406

Query: 421 RSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIE-MLNKQDVLVVAGKGHETVHIVTNG 478
             EDP  I  EI   I   +E   +R EAI+ A+      +D +++AGKG +   IV   
Sbjct: 407 NYEDPLAIAEEISSFITRPVEKIADREEAIQRAMATTSKPEDAVIIAGKGADCYQIVNGI 466

Query: 479 EKKMSVDCDIIREIL 493
           +++   D  I    L
Sbjct: 467 KEEYPGDAAIAERYL 481


>gi|325519768|gb|EGC99073.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. TJI49]
          Length = 513

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 147/475 (30%), Positives = 222/475 (46%), Gaps = 28/475 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +D+R + AG +FVA   +  D   FI +A+A+GA A++          +A +     
Sbjct: 30  QLHADTRSLGAGDVFVAYAVDGADNRGFIAEAVARGAAAVLYQPEGLAAASAAPVALAV- 88

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                   +     AS  YG   +++LA+  TGT+GK+S   ++             IG 
Sbjct: 89  ----PALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVIGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ LS+ G   V++E SSH L Q R++G       
Sbjct: 145 LGSGMPGQLVPTGFTTPDAPQLQRSLAQLSAAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T  AY  AK +LF         A++  DDA  + ++++      R +
Sbjct: 205 FTNLTQDHLDYHGTFDAYEAAKAKLFA--WRGLRAAVVNRDDAAGRRLLEKLAGR-VRTI 261

Query: 269 SVGYQGKFIH--------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           + G                  V A        +     D D      G F V N L   G
Sbjct: 262 AYGIGDAQQAPDADRELVALDVRATATGTAFRLHSSWGDADVEVGTLGTFNVSNLLAVLG 321

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +A  +     L  + +L  V GR + +G    S    + +DYAHT ++LE  L  +R 
Sbjct: 322 ALLAADVPFDAALAEVARLESVNGRMQRLGGRLQSDEPLVVIDYAHTPDALEKTLDALRP 381

Query: 379 IT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +I+ G
Sbjct: 382 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQAIIDQIVAG 441

Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 MTAPDRARRTEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 495


>gi|148997407|ref|ZP_01825012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575274|ref|ZP_02721237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|307068174|ref|YP_003877140.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756462|gb|EDK63503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578907|gb|EDT99435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|306409711|gb|ADM85138.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 481

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 132/501 (26%), Positives = 221/501 (44%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K  L E 
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME- 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K    II +D  +   + ++  +         +  +         I N +  + S  
Sbjct: 235 ---KSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQ---------IENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI + I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|288919048|ref|ZP_06413389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
 gi|288349588|gb|EFC83824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
          Length = 527

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 156/475 (32%), Positives = 244/475 (51%), Gaps = 17/475 (3%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  + ++  V+ DSR +  G ++ A+ G    G  F   A+A GA A++   + + +  
Sbjct: 52  VRLDDVRVTGVTHDSRAVIPGDLYAALPGANVHGADFAVGAVAAGAVAVLTDPSGAAR-- 109

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
               R   P+LV D+ R+ L+  A+ +YG   +   +L VTGT+GK++ A  +    + +
Sbjct: 110 -LAGRVAVPVLVTDDPRRDLAPVAAWVYGHPSQALTLLGVTGTNGKTTTAFLLDAGLRAA 168

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G ++  +G   T I      +  TTP    L    + +  +GVT   +E SSH L QHR+
Sbjct: 169 GHTTGLLGTVQTRIGGTVVPSVRTTPESSDLQALFATMVERGVTAAVMEVSSHALAQHRV 228

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D ++    +FTNL +DH+D+H T + YF AK  LFE    +   A+I  DD + + + ++
Sbjct: 229 DALRFTGAAFTNLSQDHLDFHPTMEDYFAAKATLFEA--GRSKDAVICVDDDWGRRLARQ 286

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             +A    ++ G    +     V          +  +G   D    LPG F + NAL A 
Sbjct: 287 RPDARTYSVT-GADADWWPEDVVAGPAGTVCRVLGPDGAKADLSVTLPGRFNLANALGAL 345

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A G+   +  E +  L  VPGR E V    +     VD+AHT +++  +L+ +R +
Sbjct: 346 ALLAATGVPLEVAAEGISSLTGVPGRMERVD-GGQPFLAVVDFAHTPDAVVTLLEAVRPL 404

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
            +GR+IVV GCGGDRD+GKRP+MG  A  LAD+A+ T+DNPRSEDP  I  +I+ G    
Sbjct: 405 VTGRVIVVLGCGGDRDRGKRPLMGAAAARLADLAVFTNDNPRSEDPAVILDQIVAGAREV 464

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
                F+ + +R  AI  A+      D +VVAGKGHET   V  G      D ++
Sbjct: 465 AGAGRFVVEPDRAAAIALAVAAAGPADAVVVAGKGHETGQNVA-GVITPFDDREV 518


>gi|305680919|ref|ZP_07403726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659124|gb|EFM48624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 497

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 157/494 (31%), Positives = 237/494 (47%), Gaps = 18/494 (3%)

Query: 10  DFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           D  +LI   +     +  +  I EV  +S  + AG +F A+ G +  G      A    A
Sbjct: 7   DVAQLIGARMQGGTAEQAQVPITEVGLNSAELPAGALFAAVPGTRVHG---ARFAADTAA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            AI+   A       +      P+LVVD+ R  L + A+ +YG     +  + +TGTSGK
Sbjct: 64  AAILTDEAG--WGLLSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ +  ++     +G     IG T T I+       LTTP    L      + ++GVTHV
Sbjct: 122 TTTSYMLEAGLLAAGYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHV 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPA 244
            +E SSH L   R+ G+K     FTNL +DH+D+H T   YF+AK   F    P + + A
Sbjct: 182 VMEVSSHALMLGRVLGVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARA 241

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFL 303
           ++  DD + +++     +    + + G  G +            Q+  ++   G      
Sbjct: 242 VVCVDDEWGEKMASVFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFRLAAPSGAVVAAT 301

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG F V NA +A  L   +G+D   +L  L  +  VPGR E V    +     VDYA
Sbjct: 302 VPLPGRFNVANAALALALADTVGVDMTALLPGLAGV-GVPGRMEVVDC-GQDFLAVVDYA 359

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +++ +L  +R   +GRI +V G GGDRD  KRPIMG  A   AD  +VTDDNPR+E
Sbjct: 360 HKPAAIKAVLATVRGQITGRIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNE 419

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP  IRA+++ G        +E G+R  AIR  +      D +++AGKGHE   ++ +G 
Sbjct: 420 DPAAIRAQVLAGTAAGSAEVVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI-DGV 478

Query: 480 KKMSVDCDIIREIL 493
                D + +R  L
Sbjct: 479 MHHFDDREELRAAL 492


>gi|225859285|ref|YP_002740795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae 70585]
 gi|225721175|gb|ACO17029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae 70585]
          Length = 481

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 130/501 (25%), Positives = 220/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+ +DHI    H + + YF  K  L E 
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISQDHIGPIEHPSFEDYFYHKRLLMEN 235

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   II +D  +   + ++  +         +  +         I N +  + S  
Sbjct: 236 ----SRAVIINSDMDHFSVLKEQVEDQNHDFYGSQFDNQ---------IENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   N++ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENSVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
 gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis
           str. Sterne]
 gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
          Length = 401

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 114/409 (27%), Positives = 184/409 (44%), Gaps = 36/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP- 114
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 115 -ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
              ++ +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSL 222

Query: 233 LFEELLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIH 286
           LF  L        +  A++ ADD   +   K        V++ G + G  +  K +    
Sbjct: 223 LFARLGNNLSTIDKKIAVLNADDPSVEYFKKI---TSAEVITYGIHNGADVQAKNITLSP 279

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR 
Sbjct: 280 KGIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRM 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           E +  N +   + VDYAHT ++LE +L  IR    G+II VFGCGGDRD
Sbjct: 340 EIIDEN-QDFLVIVDYAHTPDALENVLSTIREFAKGKIITVFGCGGDRD 387


>gi|322390040|ref|ZP_08063576.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321143247|gb|EFX38689.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 481

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 127/495 (25%), Positives = 217/495 (43%), Gaps = 38/495 (7%)

Query: 9   KDFPE-LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           ++F E L+N    + ++      + +S DSR + A  +F  + G       ++ QAI+ G
Sbjct: 15  QNFREVLVNGEYYYHLEG--TSFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNG 70

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
               V    Y +           P ++V++ ++ +SL A   YG   +   +LA TGT G
Sbjct: 71  LGFYVSEKDYEV---------GIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTH 184
           K++ A F   I ++S   +      +T+          TTP  + L   ++   +   TH
Sbjct: 122 KTTAAYFAYHILEQSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFSMMAEAVANDRTH 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H T + YF  K  L    +    
Sbjct: 182 LIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL----MKNSQ 237

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
             +I +D  + + +  +  N             F   +    I   +  + S  GK   +
Sbjct: 238 AVVINSDMDHFQVLADQVANQ---------DHDFYGSQSENQIETSKAFSFSATGKLAGN 288

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G F   NA+ A   C+ +G     + + + K   VPGR E V T   G ++++D
Sbjct: 289 YDIQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRME-VLTQKNGAKVFID 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNP 420
           YAH  +SL+ +L  + T  +G I +V G  G++ + +R   G +  D  +I   +T D+P
Sbjct: 347 YAHNGDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDP 406

Query: 421 RSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNG 478
             EDP  I  EI   I   +E   +R +AI+ A+ M    +D +++AGKG +   IV   
Sbjct: 407 NYEDPLAIAEEISSYITRPVEKIADREQAIQVAMAMTSKPEDAVIIAGKGADCYQIVNGV 466

Query: 479 EKKMSVDCDIIREIL 493
           +++   D  I    L
Sbjct: 467 KEEYPGDAAIAERYL 481


>gi|148992580|ref|ZP_01822248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|168484981|ref|ZP_02709926.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488808|ref|ZP_02713007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|147928597|gb|EDK79611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|172041891|gb|EDT49937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|183572773|gb|EDT93301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|332072323|gb|EGI82806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17570]
 gi|332200092|gb|EGJ14165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 481

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 135/501 (26%), Positives = 219/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMVIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|289640757|ref|ZP_06472928.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
           Datisca glomerata]
 gi|289509333|gb|EFD30261.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
           Datisca glomerata]
          Length = 571

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 144/417 (34%), Positives = 214/417 (51%), Gaps = 21/417 (5%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+LV  + R  L   A+R+YG       +L VTGT+GK++VA  ++   + +G ++  IG
Sbjct: 152 PVLVAADPRALLGPVAARVYGDPSAALTLLGVTGTNGKTTVAYLLEAGLRAAGHTTGLIG 211

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T ++     +  TTP    L   L+ ++ +GVT  ++E SSH +  HR+ GI+    
Sbjct: 212 TVQTRLAGTVLPSVRTTPEATDLQALLAVMAERGVTAAAMEVSSHAVALHRVGGIRFAGA 271

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL +DH+D+H + + YF AK  LF     +   ++I  D  + +++      A    
Sbjct: 272 AFTNLSQDHLDFHPSMEDYFAAKAALFTP--ERTGVSVIDTDTPWGRQLAAAVPGA---- 325

Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           ++ G           V A         +   G D      LPG F V NALVA  L +A 
Sbjct: 326 ITCGTAADAHWRAVDVTAGPTGTTFRALGPHGVDVRVGIALPGAFNVGNALVALALLVAT 385

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ + +    L  L  VPGR E V    +     VDYAHT ++++ +L+ +R + SGR+I
Sbjct: 386 GVPAPVAAAGLASLPGVPGRMERVDA-GQPFLGLVDYAHTPDAVQTLLRTVRPLVSGRVI 444

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------P 437
           VV GCGGDRD+ KRP+MG  A   AD+AI T DNPRSEDPE I A++  G+         
Sbjct: 445 VVLGCGGDRDRRKRPLMGAAAAAGADLAIFTSDNPRSEDPELIIAQMCTGVGTLPPSARG 504

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             + + +R  AIR A+      D +V+AGKGHET      G      D D++R  L 
Sbjct: 505 RVMVEPDRAAAIRRAVGFARPGDAVVLAGKGHETGQE-QAGVVTPFDDRDVLRAELA 560



 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
          + L++         +  ++ DSR ++ G ++ A+ G +  G  F+ Q
Sbjct: 20 DGLAVTGGAVAGVVVRGITHDSRAVRPGDLYAALPGARAHGAAFVRQ 66


>gi|332528823|ref|ZP_08404797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
 gi|332041682|gb|EGI78034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
          Length = 554

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 154/515 (29%), Positives = 226/515 (43%), Gaps = 56/515 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-------DFSA 84
           E+S+DSR + AG  F+A  G   DG  F+P A+AQGA A +V +            D SA
Sbjct: 28  ELSTDSRRVGAGDGFIAWPGAARDGRAFVPAALAQGAAACLVDAPGLAAFADAYGLDASA 87

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
                      +  +      A+  YG+  +   +LA+TGT+GK+S A ++ Q       
Sbjct: 88  RAERIAAYAGPEGLKAASGPIAANYYGQPSQALEVLAITGTNGKTSTAWWLAQALSALRP 147

Query: 143 S--SFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +     IG          +       LTTP P+ L ++L  L+ QG +  ++EASS G+ 
Sbjct: 148 TAPCAMIGTLGVGRVTATAEEIVGTGLTTPDPVLLQQSLRRLADQGFSACALEASSIGIV 207

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           + RLDG  +    FTN  +DH+DYH +  AY+ AK  LFE   P+   A++  DD    E
Sbjct: 208 ERRLDGTHIRVALFTNFTQDHLDYHGSMAAYWQAKAALFE--WPQLPAAVVNVDDPQGAE 265

Query: 256 VMKR-AHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +  A  AG  + +   +           +    +  +  I    +         G + 
Sbjct: 266 LARTLAARAGLDLWTCSLRADSAARLRANDIRMTAHGLRFEICEGAQTTSLQARTLGAYN 325

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--------------------- 350
           V N L        +G   A  +    +LH VPGR EF                       
Sbjct: 326 VSNLLGVIATLRCLGFALADAVAACGELHPVPGRMEFFSGGMSAAPGRPKQANIPSGGSE 385

Query: 351 ------TNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPI 401
                          VDYAHT ++L  IL+ +R +     GR+  VFGCGGDRD  KRP+
Sbjct: 386 DTAVPSVGGNTPLAVVDYAHTPDALAQILQALRPLAAQRGGRLWCVFGCGGDRDPVKRPL 445

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNK 458
           MG+ A   AD  ++T DNPRSE P+ I  +I  G+P       + +R  AI  A+     
Sbjct: 446 MGEAAARHADRVVLTSDNPRSEPPQAIIEQIQRGLPPGCDAWVEPDRAVAIARALAAAQA 505

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            DV++VAGKGHE     T G ++   D   +   L
Sbjct: 506 PDVVLVAGKGHEDYQE-TAGVRRPFSDRQQVSAAL 539


>gi|296117533|ref|ZP_06836117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969264|gb|EFG82505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 562

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 157/529 (29%), Positives = 249/529 (47%), Gaps = 70/529 (13%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATI 86
             ++ ++ DSR +++  +F A+ G +  G  F  Q     A+A++  +A   + + S T 
Sbjct: 22  VTVDAITLDSRLVESEHLFAAVPGTRTHGAEFAAQTS---AKAVLTDAAGVDILNGSDTA 78

Query: 87  RS-NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            S + PI+VVD+ R  L   ++ +YG   +N+  L VTGTSGK++    ++     +G S
Sbjct: 79  ESFDRPIIVVDDIRAVLGDISAEIYGHPTQNLTVLGVTGTSGKTTTTYLLESGLLAAGYS 138

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG T T I+    D +LTTP    L +  + +  +GVTHV +E SSH LD  R+ G+
Sbjct: 139 TGLIGTTGTRINRTPVDTQLTTPEAPTLQELFARMVDEGVTHVVMEVSSHALDLGRVQGV 198

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G FTNL +DH+D+H T + YF+AK +LF         A++  +D + + +  +   
Sbjct: 199 DFAVGGFTNLSQDHLDFHPTMEEYFSAKAKLFVGN-NAARHAVVCINDDWGERLADQVDA 257

Query: 263 AGCRVLSVGYQGKFIH-----------------------------LKKVCAIHNKQQVTI 293
               +  V   G  +H                              ++      +QQV +
Sbjct: 258 EDIPLTVVSTTGAIVHTGDEGSVAEADEMLRERTRELLVPGTVVAWQQSVETTGEQQVAL 317

Query: 294 SVE------------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            +              + FDF  PLPG+F + NA +A G+  A GID    +  L K+  
Sbjct: 318 EINPPRESEVIQAEMARSFDFRLPLPGDFNIANAGLAVGMASAAGIDLDTFITALTKV-A 376

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGCGGDR 394
           VPGR + +    +     VDYAH   ++E +L+ +R+          GR+ VV G GGDR
Sbjct: 377 VPGRMQRID-EGQDFVAVVDYAHKPAAIEAVLETLRSQLESAGNTAQGRLGVVVGAGGDR 435

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----------GFIEKGN 444
           D  KR +MG  A   AD  +VTDDNPR+EDP  IR  ++ G              +E  +
Sbjct: 436 DSSKRGLMGAAAAKAADFVVVTDDNPRTEDPAPIREAVMAGAREAAEESNRPVEIVEIAS 495

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R +AI   +   +  D ++V GKGHE   ++  G      D + +   L
Sbjct: 496 RADAIDAVVNWAHDGDAVIVVGKGHEVGQLI-GGTMHHFDDREELSRAL 543


>gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
 gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
          Length = 508

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 131/510 (25%), Positives = 225/510 (44%), Gaps = 35/510 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++++    LI ++    +   E +I  ++ DSR +   ++F A+ G   +G  FI  
Sbjct: 8   LNDVLFRLNQNLIQKI----IGSCEVEILGLAYDSRCVSFNFVFFALPGLYFNGQKFIES 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENI--L 118
           AI +G+  IV ++     D      SN   + VD  N ++F+S FA   Y +  + +  +
Sbjct: 64  AIQRGSNVIVHTNDIDFYD------SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKII 117

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKAL 174
            VTGT GKSSV  ++  + +  G     I                 R +TP    +   L
Sbjct: 118 GVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVFLEDGSGALVKNPYRQSTPESTEIHLVL 177

Query: 175 SYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           S + +  V +  +E++SHGLD    RL  I+      TN+  +H+++H T Q Y  AK+ 
Sbjct: 178 SKMVANNVEYAIIESTSHGLDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLN 237

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQ 290
           LF          II  DD +    M    N+  R  +   +       + K+       +
Sbjct: 238 LFYSANSHGGFGIINMDDNHFSVFM----NSINRTYTYSLKNEKADFFISKINEQMGFTE 293

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFV 349
                    +     L G F V N + A  +    + +D + ++  L  +  + GR + +
Sbjct: 294 FEFYHNKTKYAARVNLTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQDI 353

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT  +   +    + +   R+I VFG  G+RD  KR + G+IA + 
Sbjct: 354 NF-GQDFSLIVDYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEY 412

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +D+ I+ D++PR ED  +I  +I  GI             +R  AI  AI +    D++V
Sbjct: 413 SDVIILCDEDPRGEDSMQIIRDIAEGIVTKTLNRDLFFIPDRKCAIEKAINIACSDDLVV 472

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             GKGHE+  I  +       +  +I++I+
Sbjct: 473 TLGKGHESSIIYKDKSI-FWDEQAVIKDII 501


>gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
          Length = 492

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 122/477 (25%), Positives = 198/477 (41%), Gaps = 19/477 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + KI  + SDSR+++   IF  I G   DGH ++  AI QGA+ IV S           
Sbjct: 12  SDLKIESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHSKPLR------R 65

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL--S 143
                  + V +    L+  A   Y  HP   +   G +G S      + + +  G    
Sbjct: 66  YYQGIVYVQVPDVLDELNRVADLFY-DHPSYKMTGIGVTGTSGKTVVARVVARLLGRYLK 124

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              +G       +       TTP PI L +    +  + V   ++E SSHGL   R+D +
Sbjct: 125 MGYVGNNGIEYGATMMQMTGTTPDPICLHRNFYNMVKENVKGFTLEVSSHGLALKRVDSV 184

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTN   +H+D+H T      +  +LF  LL +   AI+ AD+      +   + 
Sbjct: 185 NFSIVVFTNAYEEHMDFHGTIDNLMVSYEKLF-RLLQEGGYAILNADEVRFNHFLSMNYK 243

Query: 263 ---AGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                 ++LS G +    I  + +    +     I ++ + F    P+   F + N L  
Sbjct: 244 DLSEHAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAPFNISNTLAI 303

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                A+ +    ++  ++ +  V GR E V    +   I VDY   +++ E + K +  
Sbjct: 304 LTTLYALEMTPEEIVNAIKYIQPVEGRMEVVPVK-QPFHIIVDYCQHAHNFEEVFKFVYG 362

Query: 379 ITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
           +   G +I VFG  G +D  KR  +G +A    D  I+T+ + R +D E I  +I   I 
Sbjct: 363 VKGNGHLIAVFGAPGRKDIHKRSKIGALANKYCDYVILTEQDERDDDIEGICEQIQEQIV 422

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            P  +   NR  AI+ AI+     DV+++ GKGHE       G      D  I +E 
Sbjct: 423 DPISVIITNRRFAIQQAIDAACAGDVILILGKGHEQFMTSLVGNTPYPGDKFIAQEY 479


>gi|332200971|gb|EGJ15042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 481

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 218/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    +    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +    S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFRFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|313891284|ref|ZP_07824902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120351|gb|EFR43472.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 479

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 131/497 (26%), Positives = 228/497 (45%), Gaps = 38/497 (7%)

Query: 5   DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           DL+   K+F E+I   S +   +      ++S DSR +    +F  + G       ++  
Sbjct: 9   DLLKADKNFREVIADDSYY-YHYTGLNFAKLSYDSRDVDDQTLFF-VKGANFK-AEYLQS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+ QG  A +    Y +         + P ++V++ +  +S+ A   Y    +   +LA 
Sbjct: 66  ALEQGLPAYISEVDYEV---------DIPAIIVNDIKHAMSIIAMAFYDNPQDNLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S  ++      +T+       ++LTTP  + L K ++   S
Sbjct: 117 TGTKGKTTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFKSQLTTPESLDLFKMMAECVS 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L E  
Sbjct: 177 NGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMEN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  II +D  Y K + ++  N          +  F        I + Q  T  V G
Sbjct: 236 ---SRAVIINSDMDYFKILKEQVKNQ---------EHDFYGQASDNHILDSQAFTFKVTG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NAL A   C+ +G  S  + + + +   VPGR E V ++  G 
Sbjct: 284 KLAGSYKTLLIGRFNQDNALAAGLACLRLGASSDDIRKGIAE-TTVPGRME-VLSHPCGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE ++  +     G+II++ G  G++ + +R    K+  +  ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLVSVVEEHQKGQIILIIGSTGNKGESRRADFAKVINNHPNLSVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNK-QDVLVVAGKGHETVH 473
           T D+P  EDP+ I  EI   +   +    +R +AI+  +++  K  D L++AGKG +   
Sbjct: 402 TADDPNFEDPQTISEEIASYVSRQLTIEVDREQAIKLGLQLCQKEGDALIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIR 490
           I+   ++  + D  I +
Sbjct: 462 IINGKKRDYAGDYTIAK 478


>gi|24380055|ref|NP_722010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus mutans UA159]
 gi|46577050|sp|Q8DST2|MURE_STRMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24378047|gb|AAN59316.1|AE014997_6 putative UDP-N-acetylmuramoylananine-D-glutamate-2,6-
           diaminopimelate ligase; UDP-MurNac-tripeptide synthetase
           [Streptococcus mutans UA159]
          Length = 483

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 126/495 (25%), Positives = 218/495 (44%), Gaps = 38/495 (7%)

Query: 10  DFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +F E+I+     +     E   + +S DSR I+A  +F  + G       F+ +AI  G 
Sbjct: 16  NFREIIDGKHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLEKAIESGL 73

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
              V    Y +           P+++V+N +  + L A   Y    + +  LA TGT GK
Sbjct: 74  TFYVAEKDYQV---------GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ A F   I ++ G     I   +T         ++LTTP  + L K ++   + G+TH
Sbjct: 125 TTAAYFAYHILKQ-GYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAVANGMTH 183

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H T + YF  K  L    L    
Sbjct: 184 LIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL----LKHSR 239

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
             I+ +   +   + ++  +             F        I N +  +  + GK    
Sbjct: 240 YVIVNSQMNHFALIKEQVADQPH---------DFYGKYSDNQIINSKAFSFDLTGKLAGH 290

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G F   NA+ AA  C+ +G     + + + +   VPGR E V     G +++VD
Sbjct: 291 YDIQLTGSFNQENAVAAALACLQLGASQTDIQKGIVQ-TTVPGRME-VLIQKNGAKVFVD 348

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNP 420
           YAH  +SLE +L  +     G +I++ G  G++ + +R   G +     ++  I+T D+P
Sbjct: 349 YAHNGDSLEKLLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTADDP 408

Query: 421 RSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNG 478
            +EDP+ I  EI H I   +    +R +AI+ A+ +   + D +++AGKG +   I+   
Sbjct: 409 NNEDPQLISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIIKGK 468

Query: 479 EKKMSVDCDIIREIL 493
               + D ++ R+ L
Sbjct: 469 RTAYAGDIEVARKYL 483


>gi|290579966|ref|YP_003484358.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
 gi|254996865|dbj|BAH87466.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
          Length = 483

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 128/495 (25%), Positives = 219/495 (44%), Gaps = 38/495 (7%)

Query: 10  DFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +F E+I+     +     E   + +S DSR I+A  +F  + G       F+ +AI  G 
Sbjct: 16  NFREIIDGEHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLEKAIESGL 73

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
              V    Y +           P+++V+N +  + L A   Y    + +  LA TGT GK
Sbjct: 74  TFYVAEKDYQV---------GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ A F   I ++ G     I   +T         ++LTTP  + L K ++  ++ G+TH
Sbjct: 125 TTAAYFAYHILKQ-GYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAAANGMTH 183

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H T + YF  K  L    L    
Sbjct: 184 LIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL----LKHSR 239

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
             I+ +   +   V ++  +             F        I N +  +  + GK    
Sbjct: 240 YVIVNSQMNHFALVKEQVADQPH---------DFYGKYSDNQIVNSKAFSFDLTGKLAGH 290

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G F   NA+ AA  C+ +G     + + + +   VPGR E V     G +++VD
Sbjct: 291 YDIQLTGSFNQENAVAAALACLQLGASQTDIQKGIVQ-TTVPGRME-VLVQKNGAKVFVD 348

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNP 420
           YAH  +SLE +L  +     G +I++ G  G++ + +R   G +     ++  I+T D+P
Sbjct: 349 YAHNRDSLEKLLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTADDP 408

Query: 421 RSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNG 478
            +EDP+ I  EI H I   +    +R +AI+ A+ +   + D +++AGKG +   IV   
Sbjct: 409 NNEDPQLISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIVKGK 468

Query: 479 EKKMSVDCDIIREIL 493
               + D ++ R+ L
Sbjct: 469 RTAYAGDIEVARKYL 483


>gi|329117147|ref|ZP_08245864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326907552|gb|EGE54466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 483

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 131/504 (25%), Positives = 225/504 (44%), Gaps = 38/504 (7%)

Query: 2   KLQDLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K  +L+   K+F E++++ + +   +     + ++ DSR +    +F A  G       +
Sbjct: 6   KTIELLKEDKNFREVLDKENYY-FNYSALTFSNLTYDSRKVDMSTLFFA-KGAAFK-AEY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  AI  G  A V    Y +           P ++V + +K +++ A   YG   + +  
Sbjct: 63  LESAIKLGLTAYVSEVDYQV---------GIPAIIVTDIKKAMAIIAKDFYGNPQDKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   I Q S   +      +T+       ++LTTP  + L + +S 
Sbjct: 114 LAFTGTKGKTTAAYFAYNILQESHKPAMLSTMNTTLDGKTFFKSQLTTPESLDLFQMMST 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
           +   G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 IVDNGMTHLIMEVSSQAYLVERVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         II +D  +   + ++  N          +  F   +    I N Q  T S
Sbjct: 234 EN----SRAVIINSDMDHFDILAEQVANQ---------EHDFYGSQSENQILNSQAFTFS 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             GK   D+   L G+F   NA  A   C+ +G D   + + + +   VPGR E +   S
Sbjct: 281 ANGKMAGDYDIQLIGKFNQENATAAGLACLRLGADLTDIKQGIAR-TSVPGRMEVISHPS 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-I 412
            G +++VDYAH  +SLE ++  +     G I ++ G  G++ + +R   G++  +     
Sbjct: 340 -GAKVFVDYAHNGDSLEKLVTVVEEHQKGNISLIIGATGNKGESRRADFGQVINNHPTLK 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNK-QDVLVVAGKGHE 470
             +T D+P  EDP+ I  EI + +   +    +R +AI TAI+   K  D L++AGKG +
Sbjct: 399 VYLTADDPNFEDPQDICQEIANHVNRSVSIIADRTKAISTAIKDCQKEGDALIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
              IV   +     D  + + ++ 
Sbjct: 459 AYQIVNGQKTDYPGDLAVAQSLIN 482


>gi|168493432|ref|ZP_02717575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576477|gb|EDT97005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 481

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 218/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    +    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +    S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFRFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQAGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|315504601|ref|YP_004083488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
 gi|315411220|gb|ADU09337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
          Length = 507

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 227/482 (47%), Gaps = 22/482 (4%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +  +  +  V+  S+ ++ G ++ A+ G +  G  F   A   GA A++   A     
Sbjct: 27  PEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAVALLTDPAG---- 82

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139
            +    +  P+LVV + R  L   A+ +YG       ++ VTGT+GK+S +  V+   + 
Sbjct: 83  VALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRA 142

Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G  +  IG   T +     D+  TTP    L   L+     GV  V +E SSH L   R
Sbjct: 143 AGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGR 202

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + G++   G +TN G DH+D+H  +  YF AK +LF+    +    ++  DD   + + K
Sbjct: 203 VGGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG---RCRVEVLNHDDPALRPLHK 259

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALV 317
                     + G          +      Q+ T+   +G        LPG   V NAL+
Sbjct: 260 ---PGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  L +A+G+D       +     VPGR E V +     R  VDYAH +N++E +L  +R
Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELV-SGDAPVRGVVDYAHKANAIEAVLIALR 375

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII---- 433
            +T GR+I V G GGDRD+GKRP+MG +A   AD+ +VTDDNPR+EDP  IRAE++    
Sbjct: 376 DLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAGAY 435

Query: 434 --HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   IE   R  AI  A+ M    DV+ V GKG E    +  GE     D   +  
Sbjct: 436 AAATPARVIEVPGRRAAIEEAVRMAEPGDVVAVLGKGQERGQEI-GGEVLPFDDRVELAA 494

Query: 492 IL 493
            L
Sbjct: 495 AL 496


>gi|50913697|ref|YP_059669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|139474340|ref|YP_001129056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|68052497|sp|Q5XDM7|MURE_STRP6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224788|sp|A2RG75|MURE_STRPG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|50902771|gb|AAT86486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|134272587|emb|CAM30854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 481

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 224/503 (44%), Gaps = 38/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   +  +  +          +  F        I   Q  +  
Sbjct: 234 EN----SRAVVINSGMDHFSFLADQVADQ---------EHMFYGPLSDNQITTSQAFSFE 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +
Sbjct: 281 AKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTN 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
              +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++ 
Sbjct: 340 H-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLT 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++AGKG +
Sbjct: 399 VILTADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   +   + D  I +  L
Sbjct: 459 AYQIVKGQQVAYAGDLAIAKHYL 481


>gi|148988576|ref|ZP_01820009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147925777|gb|EDK76852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
          Length = 481

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 218/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    +    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +    S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFRFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|19745543|ref|NP_606679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS8232]
 gi|94987955|ref|YP_596056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94989829|ref|YP_597929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|25453128|sp|Q8P2B4|MURE_STRP8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224785|sp|Q1JN87|MURE_STRPC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224786|sp|Q1JID8|MURE_STRPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19747663|gb|AAL97178.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes MGAS8232]
 gi|94541463|gb|ABF31512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94543337|gb|ABF33385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 481

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 224/503 (44%), Gaps = 38/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   +  +  +          +  F        I   Q  +  
Sbjct: 234 EN----SRAVVINSGMDHFSFLADQVADQ---------EHVFYGPLSDNQITTSQAFSFE 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +
Sbjct: 281 AKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTN 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
              +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++ 
Sbjct: 340 H-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLT 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++AGKG +
Sbjct: 399 VILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   +   + D  I +  L
Sbjct: 459 AYQIVKGQQVAYAGDLAIAKHYL 481


>gi|296876033|ref|ZP_06900089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432944|gb|EFH18735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 481

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 127/495 (25%), Positives = 217/495 (43%), Gaps = 38/495 (7%)

Query: 9   KDFPE-LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           ++F E L+N    + ++    + + +S DSR + A  +F  + G       ++ QAI+ G
Sbjct: 15  QNFREVLVNGEYYYHLEG--TRFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNG 70

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
               V    Y +           P ++V++ ++ +SL A   YG   +   +LA TGT G
Sbjct: 71  LGFYVSEKDYEV---------GIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTH 184
           K++ A F   I ++S   +      +T+          TTP  + L   ++   +   TH
Sbjct: 122 KTTAAYFAYHILEQSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAQAVANDRTH 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242
           + +E SS      R+ G+    G F N+  DHI    H T + YF  K  L    +    
Sbjct: 182 LIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL----MKNSQ 237

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
             +I +D  + + +  +  N             F   +    I   +  + S  GK   D
Sbjct: 238 AVVINSDMDHFQVLADQVANQ---------DHDFYGSQSENQIETSKAFSFSATGKLAGD 288

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G F   NA+ A   C+ +G     + + + K   VPGR E V T   G ++++D
Sbjct: 289 YDIQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRME-VLTQKNGAKVFID 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNP 420
           YAH  +SL+ +L  + T  +G I +V G  G++ + +R   G +  D  +I   +T D+P
Sbjct: 347 YAHNGDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDP 406

Query: 421 RSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIE-MLNKQDVLVVAGKGHETVHIVTNG 478
             EDP  I  EI   I   +E   +R +AI+ A+      +D +++AGKG +   IV   
Sbjct: 407 NYEDPLAIAEEISSFITRPVEKISDREQAIQLAMATTSKPEDAVIIAGKGADCYQIVNGV 466

Query: 479 EKKMSVDCDIIREIL 493
           +++   D  I    L
Sbjct: 467 KEEYPGDATIAERYL 481


>gi|52142904|ref|YP_083926.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976373|gb|AAU17923.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 357

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 110/352 (31%), Positives = 167/352 (47%), Gaps = 16/352 (4%)

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + S      + T  P  L + L  + ++   +  +E +S GL   R+ G       FTNL
Sbjct: 8   VGSKWYPTDINTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMERVKGCNFKIAVFTNL 67

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRV 267
            +DH+DYH T   Y + K  LF  L        +  A++ ADD   +   K        V
Sbjct: 68  TQDHLDYHGTFLEYKHVKGLLFARLGNDLSTTEKKIAVLNADDPSVEYFKKI---TSAEV 124

Query: 268 LSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++ G   +  +  K +       +  +S    + +    L G F +YNAL A  + I  G
Sbjct: 125 ITYGIHNRADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNIYNALAAITVAIVEG 184

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I    + + L  L  + GR E +  N +   + VDYAHT ++LE +L  I   + G++I 
Sbjct: 185 IPLTNICDSLSNLKSIEGRMEIIDEN-QDFFVIVDYAHTPDALENVLSTISEFSKGKVIT 243

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIE 441
           VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I  G        +  
Sbjct: 244 VFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKV 303

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + +R  AI  AI M +  D++++AGKGHET  I+ +       D +  R+ +
Sbjct: 304 EVDRELAINHAINMASSNDIVLIAGKGHETYQILKDSTIH-FDDKEKARQAI 354


>gi|315221934|ref|ZP_07863845.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
 gi|315188900|gb|EFU22604.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
          Length = 481

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 129/493 (26%), Positives = 220/493 (44%), Gaps = 36/493 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F E+I++   F   +R+    ++S DSR + A  +F  + G+      F+ +A+  G +
Sbjct: 16  NFREIIDKGQYF-YHYRDLVFEKISYDSREVDASTLFF-VKGDNFK-KEFLEKAVTAGLQ 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
             +    + +           P L+V++ ++ +SL A   YG   + +  LA TGT GK+
Sbjct: 73  LYISEMDFEV---------GIPALIVNDVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A F   I Q+S   +      +T+       + LTTP  + L K ++     G TH+ 
Sbjct: 124 TSAYFAYHILQQSHKPALLSTMNTTLDGEHFFKSALTTPESLDLFKMMATAVENGRTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L E  L      
Sbjct: 184 MEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSL----AV 239

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FL 303
           ++ ++  + + + ++             +  F        I + Q  +    GK  + F 
Sbjct: 240 VVNSEMDHFEVLAEQVA---------SMEHDFYGQHSDNQIRHSQAFSFETSGKLAEKFD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F   NAL A   C+ +G   A + + +     VPGR E V T   G +++VDYA
Sbjct: 291 IQLIGRFNQENALAAVLACLRLGASVADIKKGIAS-TRVPGRME-VLTQQNGAKVFVDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRS 422
           H   SL  +L  ++    G+II+V G  G++ + +R   G +     ++  I+T D+P  
Sbjct: 349 HNGVSLANLLSVVQEHQKGKIILVLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNY 408

Query: 423 EDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEK 480
           EDP  I  EI   I        +R EAI+ A+ +   + D +++AGKG +   I+   + 
Sbjct: 409 EDPIAIAKEIASYISFDVDIIADRKEAIKIALSLTNREGDAVILAGKGADCYQIINGEKA 468

Query: 481 KMSVDCDIIREIL 493
               D  I  + L
Sbjct: 469 DYLGDYAIAEKYL 481


>gi|306827935|ref|ZP_07461202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304429854|gb|EFM32896.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 481

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 223/503 (44%), Gaps = 38/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   +  +  +          +  F        I   Q  +  
Sbjct: 234 EN----SRAVVINSGMDHFSFLADQVADQ---------EHVFYGPLSDNQITTSQAFSFE 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +
Sbjct: 281 ANGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTN 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
              +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++ 
Sbjct: 340 H-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLT 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++AGKG +
Sbjct: 399 VILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   +   + D  I +  L
Sbjct: 459 AYQIVKGQQVAYAGDLAIAKHYL 481


>gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 525

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 148/487 (30%), Positives = 229/487 (47%), Gaps = 21/487 (4%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            +     + R   +  V+SDSR  + G +F A  G K  G  F   A+  GA A++  + 
Sbjct: 26  DVGDGGPEARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFAASAVEAGANAVLTDAQ 85

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
                       + P+LVVD+ R  +   A+ + G+   ++   AVTGT+GK++ A  V+
Sbjct: 86  GRDILRRDLGGRSVPVLVVDDPRAAVGKAAALILGEPAADLDSYAVTGTNGKTTTAYMVE 145

Query: 135 QICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            I    G     IG     ++  +    LTTP P  L   L++    G T V +E SSH 
Sbjct: 146 SILGALGRKPGLIGTVEIRLAGMSVPAHLTTPMPDELQSYLAFHRRGGGTDVVMETSSHA 205

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L Q R D ++     FTNL +DH+D+H T + Y+ AK  LF     + +   +  D  Y 
Sbjct: 206 LVQGRSDPVRFTVAGFTNLTQDHLDFHGTMERYYQAKASLFTPERARNAVVSV--DGEYG 263

Query: 254 KEVMKR-AHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPL 306
           + ++   A      V ++        L       K  A+     V  S +G+       L
Sbjct: 264 RRLLAECAPRLEGEVAALAVDSGLPDLPDGVVGWKALAMEGSSFVLESTDGRRLATSTSL 323

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAH 364
           PG+F V NA +AA + +  G     +   L       VPGR E +    R   + VD+AH
Sbjct: 324 PGDFNVANAALAAVMVMTAGYSPDELARALPAGINPAVPGRMEVLNARPR---VIVDFAH 380

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            + +L   +K +R  T GR++V+ G  GDRD+GKRP MG       D   +TDD+P +ED
Sbjct: 381 NTEALVNAMKALRPSTEGRLVVLTGSAGDRDKGKRPAMGAAVARYGDFVYITDDDPHNED 440

Query: 425 PEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P  IRA +I G  GF    +E  +R +AI  AI   +++D +++AG+GHET+  V     
Sbjct: 441 PAVIRAAVIEGTRGFDTPVVEIADRSQAIDAAIAEASERDTILLAGRGHETIQEVAGVPI 500

Query: 481 KMSVDCD 487
           ++    +
Sbjct: 501 ELDDRVE 507


>gi|15674533|ref|NP_268707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71910139|ref|YP_281689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS5005]
 gi|21362717|sp|Q9A196|MURE_STRP1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13621637|gb|AAK33428.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes M1 GAS]
 gi|71852921|gb|AAZ50944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS5005]
          Length = 481

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 224/503 (44%), Gaps = 38/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   +  +  +          +  F        I   Q  +  
Sbjct: 234 EN----SRAVVINSGMDHFSFLADQVADQ---------EHVFYGPLSDNQITTSQAFSFE 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +
Sbjct: 281 AKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTN 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
              +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++ 
Sbjct: 340 H-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLT 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++AGKG +
Sbjct: 399 VILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   +   + D  I +  L
Sbjct: 459 AYQIVKGQQVAYAGDLAIAKHYL 481


>gi|296269381|ref|YP_003652013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
 gi|296092168|gb|ADG88120.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
          Length = 524

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 221/473 (46%), Gaps = 22/473 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +Q G ++VA+ G+   G  F  +A A GA AI+  +A   +     + + 
Sbjct: 36  ITGISIDSRRVQRGDLYVALPGSTAHGADFAAEASAAGAVAILTDAAGRER----AVATG 91

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSFQI 147
            P+LVV + R  L   A+ +YG    ++  +  T            +   + +G  +  I
Sbjct: 92  LPVLVVPDPRAVLGRVAAWVYGNPTADLTIIGVTGTSGKSTTTFLTEAGLRAAGHRTGLI 151

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +       RLTTP    L    + +  QGVT  ++E SSH L   R+  I    
Sbjct: 152 GGVEIRVGDLRFPARLTTPEASELQALFALMREQGVTAAAMEVSSHALALGRVAEIIYDV 211

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+D+H+    YF AK RLF     +     +  DD Y +E+ +RA      
Sbjct: 212 AIFTNLSQDHLDFHRDLDDYFAAKARLFTPDHSRLGV--VNIDDRYGRELAERAKIPITT 269

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAI 325
               G       +  V    +     +   G  + D    LPG F V NAL A    +  
Sbjct: 270 FSPSGDADADWRVADVRLGADGSVFRVVGPGGVETDVSVALPGAFNVANALAALVALVEA 329

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGR 383
           G+     +  +     VPGR E V       +++VDYAH   ++E +L+++R +  +  R
Sbjct: 330 GVPVPAAVAGIGMTTCVPGRMERVPGPGD-IQVFVDYAHKPAAVESVLRSLRAVMGSGRR 388

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           +++V GCGGDRD+GKRP+MG+ A  LAD AI T+DNPRSEDP  I A ++ G        
Sbjct: 389 LVIVVGCGGDRDRGKRPLMGEAAARLADAAIFTNDNPRSEDPLAILAAMLSGALRVPAAE 448

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
               I + +R  AI  AI      DV++VAGKGHE    V  G      D ++
Sbjct: 449 RAHVIVEPDRAAAIDLAISTARSGDVVLVAGKGHEQGQYV-GGRVIPFDDREV 500


>gi|71902980|ref|YP_279783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS6180]
 gi|123640434|sp|Q48V28|MURE_STRPM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71802075|gb|AAX71428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS6180]
          Length = 481

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 126/503 (25%), Positives = 224/503 (44%), Gaps = 38/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMVFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   +  +  +          +  F        I   Q  +  
Sbjct: 234 EN----SRAVVINSGMDHFSFLADQVADQ---------EHVFYGPLSDNQITTSQAFSFE 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +
Sbjct: 281 AKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTN 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
              +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++ 
Sbjct: 340 H-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLT 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++AGKG +
Sbjct: 399 VILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   +   + D  I R  L
Sbjct: 459 AYQIVKGQQVAYAGDLAIARHYL 481


>gi|295839427|ref|ZP_06826360.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
 gi|295827472|gb|EFG65414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
          Length = 470

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 217/450 (48%), Gaps = 20/450 (4%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F  QA + GA A +   A + +     + +  P+LVV + R  +   A+R+YG   +
Sbjct: 14  GADFAAQAASLGAVAALTDPAGAER----VLAAGRPVLVVGDPRGRMGALAARIYGNPGD 69

Query: 116 NIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
            +L   +TGTSGK++ A  ++   + +G S+  IG   T I      +  TTP    L  
Sbjct: 70  GLLQIGITGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQA 129

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +  +GV  V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +
Sbjct: 130 LFAVMRERGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQ 189

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF     +     +  DDAY + ++  A        + G+       + V         T
Sbjct: 190 LFTRARSRRGV--VNRDDAYGRRLVAEAEVPIVTFSAEGHPDADWRAEDVEIRATDSVFT 247

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  +G  +    PLPG F V N L A       GID     E +  +  VPGR E V  
Sbjct: 248 VVGPDGSRYPARAPLPGAFNVANTLAAVAALAEAGIDPGRAAEGIGAVPGVPGRLERVD- 306

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +     VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD
Sbjct: 307 EGQPYLAVVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLAD 366

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLV 463
            A++T DNPRSEDP  I A ++ G       E+G+         AI   +      D ++
Sbjct: 367 TAVLTSDNPRSEDPLAILAAMLAGAAEVPVHERGDVLVEADRAAAIAAVVARAEPGDTVL 426

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHE    V NG  +   D ++++E +
Sbjct: 427 IAGKGHEQGQDV-NGVVRPFDDREVLKEAI 455


>gi|307706003|ref|ZP_07642826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
 gi|307620422|gb|EFN99535.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
          Length = 481

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 218/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDSLFREIIDQ-GHYHYNYSDVVFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P ++V + +K +SL A   YG   E +  LA 
Sbjct: 66  AISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K              +  F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  E+P  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYENPMAIADEISSYIDHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            IV   ++    D  +    L
Sbjct: 461 QIVQGKKEAYPGDAAVAENYL 481


>gi|163785113|ref|ZP_02179819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879617|gb|EDP73415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 314

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 177/312 (56%), Gaps = 9/312 (2%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-- 244
           +E SSH   Q R+ G+    G FTNL +DH+DYH+  ++YF AK   F+ +L K   A  
Sbjct: 1   MEVSSHAAHQMRIYGLNFEGGIFTNLTQDHLDYHKDMESYFKAKKMFFDYILEKNKKAVF 60

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            I  DD Y + + ++  N    V+S G + +   +  +         T+S +GK F+   
Sbjct: 61  SINVDDFYGERLYRQLKN-IANVISYGRKSEEFKIIDMQTQPEGCFFTVSFQGKRFNLYS 119

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+F +YN   A       GID   + E   KL  + GRFE V   S+   +  DYAH
Sbjct: 120 KLRGDFNIYNISAAFSFLARYGIDIEFLKEATAKLKPIRGRFEIV--YSKDFLVVNDYAH 177

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE ILK+I+ +  GR+IVVFG GGDRD+ KRP MGKIA +LAD+ ++T DNPRSED
Sbjct: 178 TPDALENILKSIQKLKRGRLIVVFGAGGDRDKTKRPKMGKIAEELADVIVLTSDNPRSED 237

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I   I  G+      +E  +R +AI+ AI+M  + DV+++AGKGHET  I+ +    
Sbjct: 238 PKDIIENIKAGMENKKPLLEIIDREQAIKEAIKMAKENDVVLIAGKGHETYQIIGDN-IY 296

Query: 482 MSVDCDIIREIL 493
              D D+ ++ L
Sbjct: 297 HFDDSDVAKKYL 308


>gi|323487947|ref|ZP_08093203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
 gi|323398371|gb|EGA91161.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
          Length = 499

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 120/477 (25%), Positives = 214/477 (44%), Gaps = 19/477 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
             + +  +S  +     F  + G   DGHL+I +AIA GA  I+ S+   L ++ A    
Sbjct: 23  TFSSIEYNSTLVVQDCAFFCVPGENTDGHLYIGEAIANGATTIIGSNQLLLAEY-AKQHP 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +    VV N R+ L+  +   Y    + ++   VTGT+GK++ A++V  +    G+    
Sbjct: 82  DLSFAVVPNVREALAYLSDFFYRSPQKELIKVGVTGTNGKTTTATYVYNLFNLLGIGCGF 141

Query: 147 IGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           IG T  +          +  TTP    L K  +    +G   V++E SS  LDQ R++GI
Sbjct: 142 IGTTGILRMDGKIPFYKSTPTTPISSDLHKIFARFVEEGDRAVAMEVSSIALDQMRVEGI 201

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAH 261
           +      TN+  +H++YH+  + Y  +K+ LF++       A++  DD   +KE+++   
Sbjct: 202 RFDVAIHTNISEEHLEYHKIFEHYLQSKLMLFKQ----SKAAVVNVDDKGMAKEILEVIS 257

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  +    G  +      +     +  +  +G+ +    PL GE+   N   A G 
Sbjct: 258 YPHLTYSNRVDSGADLIWTACESSDTGLKFDLYYKGERWPIHVPLFGEYNAANLTAAIGS 317

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  G +   ++  L K+  V GRF+ V       ++ +DYAHT  +L  +L  ++ ++ 
Sbjct: 318 ALLSGQNIEAIVTVLPKMSQVEGRFQ-VIQGPDNRKVILDYAHTPVALSAVLNEVKKLSH 376

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---- 437
            R+I +    G RD  K P M K A   AD+ +VT D+P   +P  +   ++ G      
Sbjct: 377 NRLIALIAGIGIRDFSKMPKMAKAAEGKADVLVVTVDHPGDNEPSVVIDAVLKGFTVPYK 436

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              I   +R EA+  A++    +D+++++  G      +  GE     D  II E  
Sbjct: 437 QQVITANSRREAVLAALKESGPEDIILLSS-GSINGAQIVKGEYIPHSDEAIIEEFF 492


>gi|302868929|ref|YP_003837566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
 gi|302571788|gb|ADL47990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
          Length = 507

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 227/482 (47%), Gaps = 22/482 (4%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +  +  +  V+  S+ ++ G ++ A+ G +  G  F   A   GA A++   A     
Sbjct: 27  PEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAVALLTDPAG---- 82

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139
            +    +  P+LVV + R  L   A+ +YG       ++ VTGT+GK+S +  V+   + 
Sbjct: 83  VALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRA 142

Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G  +  IG   T +     D+  TTP    L   L+     GV  V +E SSH L   R
Sbjct: 143 AGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGR 202

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + G++   G +TN G DH+D+H  +  YF AK +LF+    +    ++  DD   + + K
Sbjct: 203 VGGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG---RCRVEVLNHDDPALRPLHK 259

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALV 317
                     + G          +      Q+ T+   +G        LPG   V NAL+
Sbjct: 260 ---PGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  L +A+G+D       +     VPGR E V +     R  VDYAH +N++E +L  +R
Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELV-SGDAPVRGVVDYAHKANAIEAVLIALR 375

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII---- 433
            +T GR+I V G GGDRD+GKRP+MG +A   AD+ +VTDDNPR+EDP  IRAE++    
Sbjct: 376 DLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAGAY 435

Query: 434 --HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   IE   R  AI  A+ +    DV+ V GKG E    +  GE     D   +  
Sbjct: 436 AAATPARVIEVPGRRAAIEEAVRVAEPGDVVAVLGKGQERGQEI-GGEVLPFDDRVELAA 494

Query: 492 IL 493
            L
Sbjct: 495 AL 496


>gi|94993717|ref|YP_601815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|166224787|sp|Q1J890|MURE_STRPF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94547225|gb|ABF37271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 481

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 224/503 (44%), Gaps = 38/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDS-DGYHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   +  +  +          +  F        I   Q  +  
Sbjct: 234 EN----SRAVVINSGMDHFSFLADQVADQ---------EHVFYGPLSDNQITTSQAFSFE 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +
Sbjct: 281 AKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTN 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
              +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++ 
Sbjct: 340 H-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLT 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNK-QDVLVVAGKGHE 470
            I+T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +  + +D +++AGKG +
Sbjct: 399 VILTADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQEAKDAVIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   +   + D  I    L
Sbjct: 459 AYQIVKGQQVAYAGDLAIATHYL 481


>gi|209558880|ref|YP_002285352.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540081|gb|ACI60657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus pyogenes NZ131]
          Length = 481

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 223/503 (44%), Gaps = 38/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ KD  F E ++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREGLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   +  +  +          +  F        I   Q  +  
Sbjct: 234 EN----SRAVVINSGMDHFSFLADQVADQ---------EHVFYGPLSDNQITTSQAFSFE 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +
Sbjct: 281 AKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTN 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
              +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++ 
Sbjct: 340 H-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLT 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++AGKG +
Sbjct: 399 VILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   +   + D  I +  L
Sbjct: 459 AYQIVKGQQVAYAGDLAIAKHYL 481


>gi|228476612|ref|ZP_04061294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
 gi|228251807|gb|EEK10872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
          Length = 481

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 124/493 (25%), Positives = 220/493 (44%), Gaps = 36/493 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F ++I+Q + +   W E   + +S DSR +    +F A  G       F+  A+  G  
Sbjct: 16  NFRDIIDQDNYY-YSWTEVTFDHLSYDSRDVTPSSLFFA-KGAAFK-PEFLENAVKAGLS 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
             V    Y +           P ++V + ++ +SL A   Y    + +  LA TGT GK+
Sbjct: 73  FYVAEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVS 186
           + A F   I +++   +      +T+        + TTP  + L + ++   + G+TH+ 
Sbjct: 124 TAAYFAFNILKQNHKPAMLSTMNTTLDGKNFFKSILTTPESLDLFRMMAEAVANGMTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS      R+ G+    G F N+  DHI    H T + YF  K  L E         
Sbjct: 184 MEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLEN----SRVV 239

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I+ +   +   + +   +          +  F       A+ +    +    GK   D+ 
Sbjct: 240 IVNSGMDHFDFIAEEVADK---------EHDFYGKNSDNAVKHGSGFSFKASGKLAGDYD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+F   NA+ A   C+ +G +   + E + +   VPGR E V T + G + +VDYA
Sbjct: 291 IQLIGDFNQDNAMAAGLACLRLGANLQDIKEGIAQ-TSVPGRME-VLTQTNGAKTFVDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRS 422
           H  +SL+ +L+ + +   G I ++ G  G++ + +R   G +     D+  I+T D+P  
Sbjct: 349 HNGDSLDKLLQVVTSHQDGHISLILGAPGNKGESRRKDFGHVLNTYPDVDIILTADDPNK 408

Query: 423 EDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVTNGEK 480
           EDP  I  EI   I   +    +R +AI+TA+ E ++ +D +V+AGKG +   IV     
Sbjct: 409 EDPLAICQEIASHISREVRIIVDREKAIKTAMSETIDSKDAVVIAGKGADAFQIVNGKRD 468

Query: 481 KMSVDCDIIREIL 493
             + D ++ ++ L
Sbjct: 469 NYAGDIEVAKKYL 481


>gi|21909820|ref|NP_664088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS315]
 gi|28896487|ref|NP_802837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes SSI-1]
 gi|25453113|sp|Q8K8H6|MURE_STRP3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21904006|gb|AAM78891.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptococcus pyogenes
           MGAS315]
 gi|28811741|dbj|BAC64670.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,
           6-diaminopimelate ligase [Streptococcus pyogenes SSI-1]
          Length = 481

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 224/503 (44%), Gaps = 38/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDA-DEYHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   +  +  +          +  F        I   Q  +  
Sbjct: 234 EN----SRAVVINSVMDHFSFLADQVADQ---------EHVFYGPLSDNQITTSQAFSFE 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +
Sbjct: 281 AKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTN 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
              +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++ 
Sbjct: 340 H-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLT 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDPE I  EI   I   +E   +R +AI+ A+ +    +D +++AGKG +
Sbjct: 399 VILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   +   + D  I +  L
Sbjct: 459 AYQIVKGQQVAYAGDLAIAKHYL 481


>gi|322373943|ref|ZP_08048478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
 gi|321277315|gb|EFX54385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
          Length = 481

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/494 (25%), Positives = 215/494 (43%), Gaps = 36/494 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           ++F ++I+Q   +   W       +S DSR +    +F A  G       F+  A+  G 
Sbjct: 15  RNFRDIIDQ-DHYYYSWTGVTFEHLSYDSRDVTPSSLFFA-KGAGFK-REFLENAVKTGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
              V    Y +           P ++V + ++ +SL A   Y    + +  LA TGT GK
Sbjct: 72  SFYVSEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A F   I ++S   +      +T+       + LTTP  + L + +S     G+TH+
Sbjct: 123 TTAAYFAYNILKQSHKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFRMMSEAVDNGMTHL 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESP 243
            +E SS      R+ G+    G F N+  DHI    H T + YF  K  L    L     
Sbjct: 183 IMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL----LENSQA 238

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDF 302
            I+ +   +   V +   +             F        + +    +   +GK   D+
Sbjct: 239 VIVNSGMDHFDFVAEEVADK---------DHDFYGKDSENTVQHSSGFSFKAKGKLAGDY 289

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+F   NA+ A   C+ +G     + + + +   VPGR E + T + G +++VDY
Sbjct: 290 DIQLIGDFNQDNAMAAGLACLRLGASLEDIKKGIAQ-TSVPGRMEIL-TQANGAKVFVDY 347

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPR 421
           AH  +SL+ +L+ +     GRI ++ G  G++ + +R   G +     ++  I++ D+P 
Sbjct: 348 AHNGDSLDKLLQVVTDHQKGRIALILGAPGNKGESRRKDFGHVLNTYPEVDVILSADDPN 407

Query: 422 SEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVTNGE 479
            EDP  I  EI   I   +    +R EAI+TA+ E    +D LV+AGKG +   IV    
Sbjct: 408 KEDPLTICQEIASHINREVRIIVDREEAIKTAMSETTGSKDALVIAGKGADAFQIVNGKH 467

Query: 480 KKMSVDCDIIREIL 493
              + D ++ ++ L
Sbjct: 468 TDYAGDIEVAKKYL 481


>gi|149183982|ref|ZP_01862354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848308|gb|EDL62586.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 413

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 115/409 (28%), Positives = 202/409 (49%), Gaps = 15/409 (3%)

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++VV +T K ++   ++ Y       N++ VTGT+GK++V + +  I +  G  S   
Sbjct: 1   AALVVVKDTFKAMAQLVNKYYDYPSLKMNVIGVTGTNGKTTVTNLIHSILRNDGQRSALS 60

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +      +  TT   +   + +     + + ++ +E SSHGL   RL G+    
Sbjct: 61  GTIGFDLDGELFPSENTTCDVMTNQEMIQKALDRDIENMVLEVSSHGLSLGRLWGVDFDV 120

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNA 263
            +FTNL  DH+DYHQT + Y  AK  LF +L   L     A++ +DD + +     +   
Sbjct: 121 VTFTNLSHDHLDYHQTMEHYGYAKGLLFSQLGQNLANPKYAVLNSDDEWYER---YSTMT 177

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              V+S G +       + +   ++    T+      F+    L G+F VYN L A    
Sbjct: 178 AHEVISYGLETYADFKAENIQYYNDLTTFTLQSPEGVFEVESKLLGKFNVYNILAAMATL 237

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A G+    ++  ++ L  V GR E V +++    +Y+DYAHT +++E  ++++      
Sbjct: 238 FAKGMSVEKLVTIIKDLPPVSGRMEKVHSDA-PLSMYIDYAHTPDAIENAIQSVLPFKEN 296

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFI 440
           +II + G GG+RD+ KRP M + A  +AD  ++T D+PR E  + I  ++  G+    + 
Sbjct: 297 KIIFLVGTGGNRDKSKRPSMAEKA-SIADYVVLTTDDPRYESYDSIVNDLGKGMRHGNYA 355

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G+R EA++ A+++    D+++ AGKGHE   I+ N  K    D +I 
Sbjct: 356 LIGDREEAVKHAVDVSEPGDIIIFAGKGHEDYQIIEN-TKYPHSDKEIA 403


>gi|77408653|ref|ZP_00785387.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
 gi|77172771|gb|EAO75906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
          Length = 483

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 130/503 (25%), Positives = 218/503 (43%), Gaps = 37/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++  D  F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  AI  G    V    Y          ++ P+++V++ +K +SL +   Y        +
Sbjct: 64  LDSAITAGLSFYVSEIDYG---------ADIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      +T+       + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
                +TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K    
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFFHK---- 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL + S A++         ++K                 F        I   Q  +  
Sbjct: 231 -RLLMENSNAVVVNSQMDHFNIVKEQVEYIPH--------DFYGDYSENVITESQAFSFH 281

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V+GK +  +   L G+F   NAL A   C+ +G+    +   + +   VPGR E V T +
Sbjct: 282 VKGKLENTYNINLIGKFNQENALAAGLACLRLGVSIEDIKNGIAQ-TTVPGRME-VLTQT 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
            G +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++ 
Sbjct: 340 NGAKIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQ 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDP  I  EI   I   +    +R EAI  A  + N K D +++AGKG +
Sbjct: 400 VILTADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGAD 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+       S D ++ ++ L
Sbjct: 460 AYQIIKGNRDNYSGDLEVAKKYL 482


>gi|325275017|ref|ZP_08141010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
 gi|324099845|gb|EGB97698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
          Length = 419

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 137/418 (32%), Positives = 208/418 (49%), Gaps = 18/418 (4%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+         + AY 
Sbjct: 7   KLFAHASRDPMIRELTLDSRNVRPGDLFLAVPGAKVDGRGHIADAL----ARGAAAVAYE 62

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            Q  +    ++ P++ V      LS  A R YG+     +++ VTGT+GK+SV   + Q 
Sbjct: 63  EQGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLDLVGVTGTNGKTSVTQLLAQA 122

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G     IG   T      Q  RLTTP PI +   L  L   G   V++E SSH L+
Sbjct: 123 LELLGKRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLYGLKKAGAKAVAMEVSSHALE 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  +       TNL RDH+DYH + QAY  AK +LF    P     ++  DD + + 
Sbjct: 183 QGRVAALAFDIAVMTNLSRDHLDYHGSMQAYEAAKAKLFA--WPSLRCQVVNLDDEFGRR 240

Query: 256 VMKR------AHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           + +       A     R+LS   + +   L   K     +  + T+     +      L 
Sbjct: 241 LAQAFADRAPADPIESRLLSYSLENRDADLFCTKAAFDDHGVRATLVTAQGERILRSQLL 300

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F + N L A    +A+      +L  + KL    GR + +G  ++   + VDYAHT +
Sbjct: 301 GRFNLSNMLAAVATLLAMDFALDEILSVIPKLQGPVGRMQRLGGGAK-PLVVVDYAHTPD 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPRSEDP
Sbjct: 360 ALEKVLEALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRSEDP 417


>gi|295394734|ref|ZP_06804949.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972330|gb|EFG48190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 491

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 145/504 (28%), Positives = 221/504 (43%), Gaps = 33/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ DL  +             M   +R I  V +DSR  + G ++ A  G    G  F+
Sbjct: 1   MKIADLTLE---------HTTVMGDPDRDITSVDNDSRTTKPGGLYAAFPGANVHGASFV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
            Q + +G  A +   A       A +  ++  ILV +  R      A+++YG      + 
Sbjct: 52  TQLVDKGVRAFLTDPAGVEIMREAQVDLTDLTILVHEFPRAIAGHIAAQVYGTGESPAMF 111

Query: 120 VTGTSGKSSVASFV-QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
               +   +  +F+     Q  G ++  IG  +T I+    D+  TTP    L + L+ +
Sbjct: 112 GVTGTNGKTTTTFILDAFLQALGHTTGLIGTVATVIAGDRVDSVRTTPEASALHQLLARM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV   S+E SSH L QHR+DG+     SFTNL +DH+DYH T   YF+AK  LF   
Sbjct: 172 RDAGVDTCSMEVSSHALSQHRVDGVHFDVVSFTNLSQDHLDYHGTMDEYFSAKAALFTPE 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++   D ++++++  +      V++V    +    K    +       +    
Sbjct: 232 FASRGVVVL--ADDWARKLVSVSQ---IPVVTVSMNSED---KPDYLVVQGDSWELHTPQ 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   LPG F V N  +A  + +  G+     +  +     V         N+   R
Sbjct: 284 GRIPFTPVLPGLFNVTNTALALAMLLEFGVQFD-AVASIANGTEVVVPGRMEVVNAEHPR 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             +DY+HT +++E +L  +       ++   G GGDRD  KR  MG  A   AD+ IVTD
Sbjct: 343 AIIDYSHTPDAIEKVLDRLSGDPVVVVV---GAGGDRDSTKRAAMGVAAARGADVVIVTD 399

Query: 418 DNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DNPRSEDP  IRA+++ G             E  NR  AIR A+E+      +VVAGKGH
Sbjct: 400 DNPRSEDPAAIRAQVLAGAREAAGARAHTVEECENRGTAIRRAVELAGANGTIVVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   +  GE     D D  RE +
Sbjct: 460 ETGQEIA-GEVLPFSDRDKTREAI 482


>gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
 gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
          Length = 509

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 139/510 (27%), Positives = 224/510 (43%), Gaps = 27/510 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +  K    L+N +++  +       +  ++ DSR ++ G +FVAI G   DGH FI QAI
Sbjct: 1   MTAKTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+GA A+VV   Y  +   A            ++R  L+  A+  Y  +P   L   G +
Sbjct: 61  ARGAVAVVVDQRYWDERPVAVPVVVV-----ADSRVALAPLAAAFY-DYPGRELTTIGIT 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYLAKALSYLS 178
           G    ++      Q    +   +G  ST+        +  D R +TP    +   L  + 
Sbjct: 115 GTKGKSTTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMV 174

Query: 179 SQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + G     +EA+SH L     RL G         N+G +H+DYH T + Y   K +LF  
Sbjct: 175 TAGCDTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFAL 234

Query: 237 LLPKES--PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           L  +     AI+ ADD      +  A     R+    ++   +  + + +      V ++
Sbjct: 235 LGERSGSRWAIVNADDPNHAYFLDAAPADAVRLRYGLHEPADVQGQILHSGPMSSVVRVT 294

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D   PLPG F   NAL A  + ++ G+        L  +    GR   +    +
Sbjct: 295 SPWGTTDLTVPLPGRFNASNALAALTVALSQGVALEAAAAALAGVRAPRGRMVPIDA-GQ 353

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAH  +S E I   +R    GR+I VFG  G+RD  KR I G+IA  + D+ +
Sbjct: 354 PFAVIVDYAHNPDSFEQIFAMLRPQVQGRMIAVFGSAGERDVAKRAIQGEIAGRMCDLLV 413

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +TD++PR ED E I A+I  G          G++   +R +AIR A+      D++++ G
Sbjct: 414 LTDEDPRGEDREAIIAQIAAGAERAGKRPGSGYLCIPDRAQAIRAAMAAAQPGDLVLLLG 473

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           KGHE   I  +     + + +  R+ L  +
Sbjct: 474 KGHEGSIIYADFSLPWNEERE-ARQALAEL 502


>gi|308177864|ref|YP_003917270.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
 gi|307745327|emb|CBT76299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
          Length = 530

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 141/483 (29%), Positives = 230/483 (47%), Gaps = 27/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  VS + + +Q G +F+ I G K  G  F+  A+A GA A++  +A            
Sbjct: 47  QILGVSLNPQIVQPGDVFLGISGAKRHGAEFVETAVANGAVAMITDTAGLEFLGDGL--- 103

Query: 89  NTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P+ VV + RK  +  A  +YG  +    +  VTGT+GK++    ++ I    G  +  
Sbjct: 104 SIPVAVVADVRKSAAAIAQNVYGTDQRSPKLFGVTGTNGKTTTTYMIRAILDALGEETGL 163

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG    +       + LTTP    L   L+ ++ Q V+ V++E SSH L   R+D ++  
Sbjct: 164 IGTIEMSARGQIIPSVLTTPESTQLHGVLARMAQQDVSSVAMEVSSHSLSYGRVDSLRFA 223

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAG 264
              +TNL +DH+D H T   YF  K +LF     +   A++  DD Y + + +RA     
Sbjct: 224 VSGYTNLTQDHLDLHGTMDEYFETKAQLFTA--ERSERAVVMVDDQYGQRLAERALVPTE 281

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              L   +   +  + ++         T+   +G++      LPG F V N  +AA + +
Sbjct: 282 TLSLDEAHPSAYWRVTELAHSGLGHSFTLRHRDGRELRARTLLPGMFNVANGALAAVMVL 341

Query: 324 AIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           A G++   +   L         VPGR + VG +       VD+AH S++L   L +IR  
Sbjct: 342 ASGVELDTLQRALNAGDPLSVAVPGRMQVVGES---PVAVVDFAHNSDALAKALDSIRPG 398

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             GR IVVFG  G+RD+ KRP MG +A   ADI IVTDD+P  EDP  IR ++  G    
Sbjct: 399 EQGRRIVVFGATGERDKTKRPDMGAVAARHADIVIVTDDDPHGEDPAPIREQVASGAQQV 458

Query: 440 IE----------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           ++             R +A+  A+ + +  D ++VAG+GHE    V   + ++    ++ 
Sbjct: 459 LDTERPGVQVHNIAPRAKAVEFAVSLAHANDAILVAGRGHEVSQDVAGIDVELDDRVELA 518

Query: 490 REI 492
           + +
Sbjct: 519 KAL 521


>gi|262364615|gb|ACY61172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D182038]
          Length = 370

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 178/371 (47%), Gaps = 12/371 (3%)

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            + Q  Q  G +S  +G     +         TT S + +   L  L  QG T  ++E S
Sbjct: 1   MLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVS 60

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II ADD
Sbjct: 61  SHGLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFS--THQSEHKIINADD 118

Query: 251 AYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              +  + +   A    ++     G+ G ++   KV    N   +       + +    L
Sbjct: 119 DVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRL 178

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N LVA    +  G   A +L     L  V GR E      +   + VDYAHT 
Sbjct: 179 MGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAHTP 237

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+
Sbjct: 238 DALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQ 297

Query: 427 KIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N     S
Sbjct: 298 AIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYS 357

Query: 484 VDCDIIREILG 494
            D   +  +LG
Sbjct: 358 -DRVTVARLLG 367


>gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 391

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 177/388 (45%), Gaps = 29/388 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLFIPQAIAQGAEAIVVSSA 76
            +     KI  +  DSR I  G +F+ + G   DG     H F+  A+  GA A++V   
Sbjct: 5   TIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLEDRHQFVEDAVKNGAVALIVERD 62

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQ 134
            +++          P ++V + R  +++ AS  YG       ++ +TGT+GK++ +  ++
Sbjct: 63  VNIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLE 113

Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +I    G  +  +G     + S      + T  P  L + L  + +Q   +  +E +S G
Sbjct: 114 KILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQG 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-----KESPAIIYA 248
           L   R+ G       FTNL +DH+DYH T   Y + K  LF  L        +  A++ A
Sbjct: 174 LHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNA 233

Query: 249 DDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD   +   K        V++ G + G  +  K +       +  +S    + +    L 
Sbjct: 234 DDPSVEYFKKI---TSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLV 290

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F VYNAL A  + +  GI    + + L  L  + GR E +  N +   + VDYAHT +
Sbjct: 291 GRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPD 349

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRD 395
           +LE +L  IR    G+II VFGCGGDRD
Sbjct: 350 ALENVLSTIREFAKGKIITVFGCGGDRD 377


>gi|119960821|ref|YP_947465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
 gi|119947680|gb|ABM06591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
          Length = 536

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 142/510 (27%), Positives = 239/510 (46%), Gaps = 34/510 (6%)

Query: 11  FPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              + + L +  P   ++R +  ++ +SR ++ G +++A+ G    G  F+PQA+  GA 
Sbjct: 19  LATIADALGVAAPDASQDRGVTGITLNSRAVETGDLYMALPGASRHGADFVPQAVEAGAV 78

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-----ILAVTGTS 124
           A+V   A + Q  +       P+L+V   R  +   A+ +Y   P +     +  VTGT+
Sbjct: 79  AVVTDDAGARQ-LALAGEQPVPVLIVPEPRTAVGRLAALIYRSQPADGGFPTLYGVTGTN 137

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++   F+  + +        IG    +       + LTTP    +   L+ +  +G+ 
Sbjct: 138 GKTTTTYFINSLLRALEKKPGLIGTIEIVAGGEPIPSLLTTPESTDVHALLALMRERGLD 197

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             S+E SSH +  HR+DG+      FTNL +DH+D H +   YF  K  LF     +   
Sbjct: 198 AASMEVSSHAISYHRVDGVMFDVAGFTNLTQDHLDLHGSMDEYFRTKAELFTA--GRARH 255

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTI-SVEGK 298
           A++  DD + +++ + A      + +    G        +  + A     +  +   +G+
Sbjct: 256 AVVTVDDDWGRQLAETADIPVTTLSTKPVDGSSSSTDWKVASITARGLGSEFELKHADGR 315

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
                  LPG+F V NA +A  + +A G+D   +   L+        VPGR + + T   
Sbjct: 316 TLRVHTGLPGDFNVANAALATVMVLASGVDEHTLQAALDAHDPFTVSVPGRMQLISTEPA 375

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                VD+AH  ++L   L+ +R+   G R+IVVFG  G RD+GKRP MG IA  LAD+ 
Sbjct: 376 S---VVDFAHNPDALSRALEAVRSPREGSRVIVVFGATGQRDKGKRPTMGAIAARLADVV 432

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLV 463
           I++DD+P  ED   IRAE++ G     +  N          R  AI+ A++M   +D ++
Sbjct: 433 IISDDDPHDEDAAAIRAEVLQGAHAARDSENLNSEIIESYPRDAAIKLAVDMATGKDTIL 492

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AG+GHE    V      +  D   +R  L
Sbjct: 493 IAGRGHEVWQEVKGVNLAL-DDRVELRAAL 521


>gi|77405779|ref|ZP_00782864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
 gi|77175636|gb|EAO78420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
          Length = 484

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 129/503 (25%), Positives = 218/503 (43%), Gaps = 37/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++  D  F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  AI  G    V    Y +         + P+++V++ +K +SL +   Y        +
Sbjct: 64  LDSAITAGLSFYVSEIDYGV---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      +T+       + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
                +TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K    
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFFHK---- 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL + S A++         ++K                 F        I   Q  +  
Sbjct: 231 -RLLMENSKAVVVNSQMDHFNIVKEQVEYIPH--------DFYGDYSENVITESQAFSFH 281

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V+GK +  +   L G+F   NA+ A   C+ +G+    +   + +   VPGR E V T +
Sbjct: 282 VKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRME-VLTQT 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
            G +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++ 
Sbjct: 340 NGAKIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQ 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDP  I  EI   I   +    +R EAI  A  + N K D +++AGKG +
Sbjct: 400 VILTADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGAD 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+       S D ++ ++ L
Sbjct: 460 AYQIIKGNRDNYSGDLEVAKKYL 482


>gi|157149815|ref|YP_001450915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074609|gb|ABV09292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 481

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 131/500 (26%), Positives = 217/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I     F         +++S DSR++    +F  + G       F+  
Sbjct: 9   DILKKDHNFREIIKDGHYFFHDGG-LTFDKISYDSRNVTNTTLFF-VKGENFK-KEFLEG 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G +  +  S + +           P+LVV++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVESGLKFYISESDFEV---------GIPVLVVNDIKQAMSLIAMEFYGNPQDKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L + ++   +
Sbjct: 117 TGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFEMMAQAVA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+   A  F N+  DHI    H T + YF  K  L E  
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDASVFLNISPDHIGPIEHPTFEDYFYNKRLLMEN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +   + + V ++             +  F        I + Q  +    G
Sbjct: 236 ---SRAVIVNSGMDHFQIVKEQVS---------SIEHDFYGENSSNTIIDSQAFSFEASG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NAL A   C+ +G     + + +  L  VPGR E V T   G 
Sbjct: 284 KLAGKYDIQLIGRFNQENALAAGLACLRLGASLTDIQKGIA-LTRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SL  +L  ++    G+ I+V G  G++ + +R   G +     +I  I+
Sbjct: 342 KVFVDYAHNGDSLTKLLSVVQEHQKGQTILVLGATGNKGESRRKDFGILLNKHPEIQVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I        +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  I    L
Sbjct: 462 IVNGIKEAYPGDYQIAENYL 481


>gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 485

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 132/460 (28%), Positives = 211/460 (45%), Gaps = 23/460 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR + +G +F+ I G   DGH F   A+A GA A++      L         +
Sbjct: 22  VTGVETDSRKVSSGNVFICIRGYTVDGHKFAEDAVANGASAVISEYPLDL---------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P +VV +T++     AS  Y        I  VTGT+GK++ A+    + + SG  +  +
Sbjct: 73  VPNVVVADTKQTAGEVASVFYDHPSHRMRIYGVTGTNGKTTTATLTYDLLRLSGRRAGIV 132

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                   +   +   TTP  + L + L+ +   GVT   +E SSH L + R+ GI   A
Sbjct: 133 STIGARFHNQTIETANTTPEAVVLHRILAEMVDAGVTDCVLEVSSHALMEGRVAGIHFHA 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAGC 265
            +FTNL  DH+DYH++   Y  AK RLFE++      AI+  A+D+ S  + + A     
Sbjct: 193 AAFTNLTHDHLDYHRSMDEYARAKARLFEQVEVTNGEAIVLNAEDSASHVMAEFAPTRRA 252

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            + S     +      V  I   + V + ++    +      G F   N   A GL    
Sbjct: 253 IMYSTTVDVEA----DVQVIWRDETVLVRMKEFKLEVPVRFMGAFNAANLAAAIGLVSTS 308

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    ++ ++  L +  GR E + T      IY+DYAHT + LE  L  ++      ++
Sbjct: 309 DMALRTIVSNVPGLTLPKGRLERLATED--AEIYIDYAHTPDGLEKCLSTLQQ-DDRALV 365

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEK 442
           VV    GDRD  KR  MG+IA   ++  IVT  + R EDP++I  +++ GI     ++  
Sbjct: 366 VVLSAAGDRDPTKRQDMGRIASRYSNEVIVTVHDVRMEDPKQIIRDLVKGIQPDVKYVTF 425

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             R EA+R A     +   +VV GKGH+ +  +       
Sbjct: 426 EAREEALRHAATQALEGKRVVVVGKGHDHIERIGRQSIPF 465


>gi|15805328|ref|NP_294020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
 gi|8134579|sp|Q9RXL3|MURE_DEIRA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|6457968|gb|AAF09877.1|AE001890_9 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
          Length = 490

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 137/509 (26%), Positives = 214/509 (42%), Gaps = 36/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL        +   +       + ++  V+ ++  +Q G  FVAI G K DGH F+
Sbjct: 1   MRLSDLAAA-----LQLPAPETDPQTDTEVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFM 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            Q           + A   +  +    S  P L V N R  L+  A+ L G       ++
Sbjct: 56  EQ------AQAAGAVAVLGEGLADGQTSPLPYLTVPNARAALADAAAALAGHPSRELKVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYLA 171
            VTGT GK++ +   + + + +GL++   G  ST+                TTP    + 
Sbjct: 110 GVTGTDGKTTTSWLTRHLLRSAGLAT---GLLSTVGYELPDGELRHFPAHFTTPEAPQVQ 166

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L  + + G     +EASSH L   R+ G+      +T+L  +H+D+H T   YF  K 
Sbjct: 167 DTLREMVAAGAQATVLEASSHALSLDRVRGVDWDVAVWTHLSSEHLDFHGTLDNYFADKR 226

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +L E        A++  DD ++ ++   A        S   Q      + +   H+    
Sbjct: 227 KLVER----ARFAVLNVDDPWTAQLRGIAPGE--TTYSAENQHADWRAQDIEERHSGLHF 280

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     DF    P+ G F V NAL        +G  +  +   L     VPGR E V  
Sbjct: 281 RVVSPAGDFQAELPMIGRFNVANALAGMAAAHHLGATALQLQAGLASFRGVPGRMELVPG 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQGKRPIMGKIALDLA 410
            +   R+ VD+AHT  SLE  L  +R  T+G + VV    GG RD  KR  +G++A  LA
Sbjct: 341 GATSPRVIVDFAHTPPSLEKALGTLRATTAGHLWVVIGSAGGPRDPYKRAPLGEVATRLA 400

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D AI+T+++ R    + I  E+  G        F+  G+R EAIR A+      D +++A
Sbjct: 401 DHAILTEEDCRDTPLQDILNEMERGAREEGRSNFVSIGDRREAIRYAVTHAQPGDTVLLA 460

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKG E              +    R +L 
Sbjct: 461 GKGPEDTLERATETLPW-NEVAEARAVLA 488


>gi|322377016|ref|ZP_08051509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
 gi|321282823|gb|EFX59830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
          Length = 481

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 136/501 (27%), Positives = 216/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   +     + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLIS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P ++V + +K +SL A   YG   E +  LA 
Sbjct: 66  AISQGLGWYVAEEDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL K S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMKNSRAVIINSDMDHFSVLKEQVA--------DQDHDFYGSQSDNQIENSKAFSFSAR 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            IV   ++    D  +    L
Sbjct: 461 QIVQGKKEAYPGDAAVAENYL 481


>gi|261366336|ref|ZP_05979219.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282571939|gb|EFB77474.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 493

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 145/504 (28%), Positives = 222/504 (44%), Gaps = 35/504 (6%)

Query: 10  DFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  EL+       +Q   R  +  +  DSR +  G +FV + G   DGH +  +A A GA
Sbjct: 2   NLCELLQATDGVLLQGDARADVQTLCYDSRAVTPGALFVCLPGLHTDGHAYAVRAAAAGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
             IV             +    P++ V ++R+ L+  A RLYG+    +  + +TGT GK
Sbjct: 62  VGIVCERPIP------GLPEALPVIQVTHSRRALAQLAIRLYGEPARQLTMIGITGTKGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A  V  +   +G     IG        +      TTP    L + L  +   G    
Sbjct: 116 TTTAHLVAAVLTAAGRKVGLIGTNGVRWPGYRHPLDHTTPESSDLQQLLRRMVDAGCDTC 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESP 243
            +E SS GL   R+ GI+   G FTNL  DHI    H +   Y   K  LF         
Sbjct: 176 VMEVSSLGLKMDRVTGIEYDIGIFTNLSPDHIGPGEHASFAEYRAWKSVLFRRC----RV 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISV-----E 296
            I+ ADD  ++ ++ +     CRV++ G      +        +H    + ++      E
Sbjct: 232 GIVNADDPQTEAILTQ---HTCRVVTYGMDRPADWRAGTDFTLLHRPGLLGVTFTAAGPE 288

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G   ++   +PG F +YNAL A      + +    V   L    VV GR E V  ++   
Sbjct: 289 GGSREYQLAMPGRFSIYNALAAIAAAGILQLPDTAVQTGLRT-AVVEGRVEPVPIHA-PF 346

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH   + E +L  +R     R+IVVFGCGG R + +R  MG+    LAD  IVT
Sbjct: 347 TVVLDYAHNEAAAENLLTTLRAYRPTRLIVVFGCGGGRSRVRRFGMGEACARLADFCIVT 406

Query: 417 DDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +DN R E    I A+I  G+        F+E  +R +A+  A++M    D++ V GKGHE
Sbjct: 407 EDNSRGEPLADILADIRTGLRRGNPDTPFVEISDRRQALYDALDMARPGDIVAVIGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T  +    E     + +IIR  + 
Sbjct: 467 TT-LQRGSETIPFCEREIIRNYMA 489


>gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptothrix cholodnii SP-6]
 gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii
           SP-6]
          Length = 513

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 144/490 (29%), Positives = 215/490 (43%), Gaps = 35/490 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           E+ +DSR ++AG  F+A  G+  DG  ++  A+A GA A ++ +  +     A    +  
Sbjct: 25  ELRTDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAA----AFGFDDER 80

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           I  +   +      A R YG+    +  +A +GT+GK+S A +  Q    +G     IG 
Sbjct: 81  IAALPGLKAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWTAQALSLAGQRCGVIGT 140

Query: 150 TST--------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                        +      LTTP P+ L ++L   +  G    ++EASS G+ +HRLD 
Sbjct: 141 LGVGEPPSRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAACAIEASSIGIVEHRLDA 200

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-A 260
             +    +TN   DH+DYH    AY+ AK  LF+   P    A I  DDA    +    A
Sbjct: 201 APIRVALYTNFTPDHLDYHGDMVAYWLAKRALFD--WPGLQAAAINVDDAQGAVLADELA 258

Query: 261 HNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + +             +  +      T+     D      L G +   N L   
Sbjct: 259 ARGDLDLWTYALHRDARLRATGLHYVDGGLAFTLHEGETDVAVHTHLIGAYNASNVLAVI 318

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----------YVDYAHTSNSL 369
           G   A+G+  A       +   VPGR   V   S  G +           VDYAHT ++L
Sbjct: 319 GGLRALGLPLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVVALPQVVVDYAHTPDAL 378

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +  L  +R +     GR++ VFGCGG+RD  KRP MG IA  LAD   VT DNPR E+P+
Sbjct: 379 DKALSALRPVAHAQGGRLVCVFGCGGNRDATKRPQMGAIAAQLADAVCVTSDNPRLEEPQ 438

Query: 427 KIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ G  G      + +R  AI   +     +DV+++AGKGHE    +  G K+  
Sbjct: 439 AIVDQILAGCAGAAHVRAEVDRTRAIEQVLAQAAPEDVVLIAGKGHEDYQDI-GGVKRPF 497

Query: 484 VDCDIIREIL 493
            D D+    L
Sbjct: 498 SDIDVATAAL 507


>gi|320547339|ref|ZP_08041630.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448037|gb|EFW88789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
          Length = 483

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 134/505 (26%), Positives = 227/505 (44%), Gaps = 39/505 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           K  D++ KD  F E+I   + + + W E    +++S DSR + +  +F A  G       
Sbjct: 6   KTLDILKKDHNFREIIFH-NHYSLDWEENPSFSKISFDSRDVDSSTLFFA-KGATFK-KE 62

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++ QA+  G    V    Y L         + P ++V + +K +SL A   YG   E + 
Sbjct: 63  YLEQAVQLGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPEEKLK 113

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
            +A TGT GK++ A F   I ++S   +      +T+       ++LTTP  + L K ++
Sbjct: 114 IIAFTGTKGKTTAAYFTYNILKQSHKPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+TH+ +E SS      R+ G+    G+F N+  DHI    H T + YF  K  L
Sbjct: 174 TAVDNGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLL 233

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                      ++ A   Y K V ++  +        G +           I N +    
Sbjct: 234 MTN----SKAVVVNAGMDYFKVVTQQVADKPHDFYGSGSEN---------TIENGRAFDF 280

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V GK    +   L G F   NAL A   C+ +G     + + + +   VPGR E V T 
Sbjct: 281 DVTGKLAGHYDIQLIGSFNQENALAAGLACLRLGTSLKDIKKGISE-TSVPGRME-VVTQ 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G +++VDYAH  +SLE +L  +     G++ ++ G  G++ + +R    +I     ++
Sbjct: 339 ANGAKVFVDYAHNGDSLEKLLSVVEEHQKGQLYLILGATGNKGESRRADFARIINAHQNL 398

Query: 413 -AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN-KQDVLVVAGKGH 469
             I+T D+P  EDP+ I  EI   I   ++   +R +AI  A+ +   + D +++AGKG 
Sbjct: 399 NVILTADDPNYEDPQAIAEEIASQITRSLDIQVDREKAIAKAMLLTKNENDAVIIAGKGA 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +   IV       + D +I ++ L 
Sbjct: 459 DAYQIVNGERTAYAGDLNIAKKYLN 483


>gi|116627264|ref|YP_819883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMD-9]
 gi|122268133|sp|Q03M85|MURE_STRTD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116100541|gb|ABJ65687.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus thermophilus
           LMD-9]
 gi|312277751|gb|ADQ62408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus thermophilus ND03]
          Length = 481

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 128/500 (25%), Positives = 219/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ KD  F ++INQ   +   W     + +S DSR I    +F A  G       F+  
Sbjct: 9   EVLKKDHNFRDIINQ-EYYYYSWTGVTFDHLSYDSRDITPSTLFFA-KGAGFK-LEFLES 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    V    Y +           P ++V + ++ +SL A   Y    + +  LA 
Sbjct: 66  AVQAGLGFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFYQHPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ + F   I ++S   +      +T+       + LTTP  + L + ++   S
Sbjct: 117 TGTKGKTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSNLTTPESLDLFRMMAEAVS 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L    
Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---- 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      I+ +   +   V +   +             F        + +    +   +G
Sbjct: 233 LKNSQAVIVNSGMNHFDFVAEEVADK---------DHDFYGKDSENTVKHSSGFSFKAKG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G+F   NA+ A   C+ +G     + + + +   VPGR E + T + G 
Sbjct: 284 KLAGDYDIQLIGDFNQDNAMAAGLACLRLGASLEDIKKGIAQ-TSVPGRMEIL-TQANGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     +I  I+
Sbjct: 342 KVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYPEINVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVH 473
           + D+P  EDP  I  EI   I   +    +R EAI+TA+ E     D LV+AGKG +   
Sbjct: 402 STDDPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGKGADAFQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV       + D ++ ++ L
Sbjct: 462 IVNGKRTDYAGDIEVAKKYL 481


>gi|22537538|ref|NP_688389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae 2603V/R]
 gi|46577055|sp|Q8DYT2|MURE_STRA5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22534419|gb|AAN00262.1|AE014255_20 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 2603V/R]
          Length = 484

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 128/503 (25%), Positives = 219/503 (43%), Gaps = 37/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++  D  F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  AI  G    V  + Y          ++ P+++V++ +K +SL +   Y        +
Sbjct: 64  LDSAITAGLSFYVSETDYG---------ADIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      +T+       + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
                +TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K    
Sbjct: 175 AVENQMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFFHK---- 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL + S A++         ++K                 F        I   +  +  
Sbjct: 231 -RLLMENSNAVVVNSQMDHFNIVKEQVEYIPH--------DFYGDYSENVITESKAFSFH 281

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V+GK +  +   L G+F   NA+ A   C+ +G+    +   + +   VPGR E V T +
Sbjct: 282 VKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRME-VLTQT 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
            G +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++ 
Sbjct: 340 NGAKIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQ 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDP  I  EI   I   +    +R EAI  A  + N K D +++AGKG +
Sbjct: 400 VILTADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGAD 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+       S D ++ ++ L
Sbjct: 460 AYQIIKGNRDNYSGDLEVAKKYL 482


>gi|255020008|ref|ZP_05292081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970537|gb|EET28026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 478

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 224/471 (47%), Gaps = 19/471 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  + SDSR ++ G +FV +     DG  F+ QA+     A   ++     +      
Sbjct: 20  VRVCGIESDSRRVRPGQLFVGLHSRHGDGARFLAQAL----AAGAAAALLQGPELRRDTV 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P+ V     + L     R Y        ++ VTGT+GKSSV   + Q+     + + 
Sbjct: 76  DGQPVWVHPEAPRLLGEALRRWYHWQGRAPGLIGVTGTNGKSSVTWLIAQLAGAEVIGTL 135

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             GP + +    Q    TTP+ + L   L     +    +++E SSH L   R+ G+   
Sbjct: 136 GAGPLTAL----QPLANTTPAAVELWSLLGAARQRRAQWLAMEVSSHALALERVAGVPFT 191

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTNL RDH+D+H +  AY  AK +LF    P    A++ ADD +S E+    H    
Sbjct: 192 AAVFTNLSRDHLDFHGSMAAYGAAKAKLFTN--PALQLAVLNADDPFSAELRTHLH-PDV 248

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R++  G+      +++         + I           PL G     N L A      +
Sbjct: 249 RIVGYGFGAGDYRVREYHPGARATLLVIDTPAGTRPLRIPLMGMANARNFLAALAAVEGL 308

Query: 326 GIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           G+D     + L  L + PGR++ +     +   + VDYAHT ++L  +L+++RT+  GRI
Sbjct: 309 GMDVDP--QVLAALRLPPGRYQRLSPRTPQQPDVLVDYAHTPDALRQVLEDLRTVAKGRI 366

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442
            VVFGCGGDRD+GKRP MG +A  LAD  ++TDDNPRSEDP  I AEI+ G+P       
Sbjct: 367 TVVFGCGGDRDRGKRPEMGAVAAALADRVLLTDDNPRSEDPAAIVAEILAGMPAGRAEVC 426

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R  AI  AI      D +++AGKGHE     + G K+   D ++    L
Sbjct: 427 HDRAAAIARAIGEAEHGDWVLIAGKGHEQTQE-SAGAKRPCDDVELATRAL 476


>gi|330469294|ref|YP_004407037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
 gi|328812265|gb|AEB46437.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
          Length = 497

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 161/493 (32%), Positives = 239/493 (48%), Gaps = 22/493 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L  +L++ P    +  +  V+  S  +  G ++ A+ G +  G  F+  A A GA A
Sbjct: 6   LGDLAARLAVAPPTTVDATVTGVTHASGEVHPGDLYAALPGARRHGAEFVADAAAAGAVA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           ++  +A +            P LVV + R  L   AS +YG   E +  + VTGT+GK+S
Sbjct: 66  VLTDAAGA----ELAAGYGLPTLVVADPRAVLGTLASAVYGDPTEKLTVIGVTGTAGKTS 121

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G ++  IG   T +     D+  TTP    L   L+    +GVT V +
Sbjct: 122 TAYLVESGLRAAGHTTGLIGTVETRLGDLVLDSVRTTPEATDLHAMLAAALERGVTAVVM 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+ G++   G +TN G DH+D+H     YF AK RLF+    + +  ++ 
Sbjct: 182 EVSSHALAMGRVGGVRFDVGGWTNFGSDHLDFHADADDYFAAKARLFDG---RCAHEVLN 238

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPL 306
            DD   K + K A        + G        + V      Q+ T+   +G   D    L
Sbjct: 239 HDDPALKALFKPAT---ISYSAAGDPSATWWAEDVNGEGYAQRFTLHGPDGLVLDAGVAL 295

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL+A  + +A G+D+A     +     VPGR E VG       + VDYAH +
Sbjct: 296 PGRHNVANALLAVAVLVAAGVDAATAARGVAACGGVPGRLESVGVAGGVRGV-VDYAHKT 354

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++  +L  +R ++SGR+I V G GGDRD+GKRP MG  A   AD+ +VTDDNPR+EDP 
Sbjct: 355 DAVVAVLAALRELSSGRLICVIGAGGDRDRGKRPAMGAAAAKGADVVLVTDDNPRTEDPA 414

Query: 427 KIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
            IRAE++ G          +E   R  AI  A+      DV+ V GKGHE    +  GE 
Sbjct: 415 TIRAEVLAGAYDAGTRTRIVEVAGRRAAIDEAVRQAEPGDVVAVLGKGHERGQEIA-GEV 473

Query: 481 KMSVDCDIIREIL 493
               D   + + L
Sbjct: 474 FPFDDVTELADAL 486


>gi|25011503|ref|NP_735898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae NEM316]
 gi|77413369|ref|ZP_00789563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
 gi|46577059|sp|Q8E4E0|MURE_STRA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24413041|emb|CAD47120.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160611|gb|EAO71728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
          Length = 484

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 129/503 (25%), Positives = 218/503 (43%), Gaps = 37/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++  D  F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  AI  G    V    Y          ++ P+++V++ +K +SL +   Y        +
Sbjct: 64  LDSAITAGLSFYVSEIDYG---------ADIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      +T+       + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
                +TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K    
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFFHK---- 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL + S A++         ++K                 F        I   Q  +  
Sbjct: 231 -RLLMENSNAVVVNSQMDHFNIVKEQVEYIPH--------DFYGDYSENVITESQAFSFH 281

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V+GK +  +   L G+F   NA+ A   C+ +G+    +   + +   VPGR E V T +
Sbjct: 282 VKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRME-VLTQT 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
            G +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++ 
Sbjct: 340 NGAKIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQ 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDP  I  EI   I   +    +R EAI  A  + N K D +++AGKG +
Sbjct: 400 VILTADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGAD 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+       S D ++ ++ L
Sbjct: 460 AYQIIKGNRDNYSGDLEVAKKYL 482


>gi|262283209|ref|ZP_06060976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261461|gb|EEY80160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 481

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 130/500 (26%), Positives = 217/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I     +         +++S DSR++    +F  + G       F+  
Sbjct: 9   DILKKDHNFREIIKD-GHYFFHDSGLTFDKISYDSRNVTNTTLFF-VKGENFK-KEFLEG 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G +  +  S + +           P+LVV++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVESGLKFYISESDFEV---------GIPVLVVNDIKQAMSLIAMEFYGNPQDKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFKMMAQAVA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+   A  F N+  DHI    H T + YF  K  L E  
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDASVFLNISPDHIGPIEHPTFEDYFYNKRLLMEN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ +   + + V ++             +  F        I + Q     V G
Sbjct: 236 ---SRAVVVNSGMDHFQIVKEQVS---------SIEHDFYGENSSNTIIDSQAFNFEVSG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NAL A   C+ +G     + + +  L  VPGR E V T   G 
Sbjct: 284 KLAGKYDIQLIGRFNQENALAAGLACLRLGASLTDIQKGI-TLTRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SL  +L  ++    G+ ++V G  G++ + +R   G +     +I  I+
Sbjct: 342 KVFVDYAHNGDSLTKLLNVVQEHQKGQTVLVLGATGNKGESRRKDFGILLNKHPEIQVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I        +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV + +     D  I    L
Sbjct: 462 IVHDQKVAYPGDYQIAENYL 481


>gi|171780226|ref|ZP_02921130.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281574|gb|EDT47009.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 483

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 130/504 (25%), Positives = 221/504 (43%), Gaps = 37/504 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K  +++ KD  F E+I               +++S DSR + +  +F A  G       +
Sbjct: 6   KTLEILKKDHNFREIIFHNQYSLTWKENPSFSKISFDSRDVDSSTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + QAI +G    V    Y L         + P ++V + +K +SL A   YG   E +  
Sbjct: 64  LEQAIQKGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPEEKLKI 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           +A TGT GK++ A F   I ++S   +      +T+       ++LTTP  + L K ++ 
Sbjct: 115 IAFTGTKGKTTAAYFAYNILKQSHKPAMFSTMNTTLDGKTFSKSKLTTPESLDLFKMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
               G+TH+ +E SS      R+ G+    G+F N+  DHI    H T + YF  K  L 
Sbjct: 175 AVDNGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLM 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++ A   + K V ++  +             F        I N +     
Sbjct: 235 AN----SKAVVVNAGMDHFKVVAEQVAD---------LPHDFYGKDSDNTIENGRTFDFD 281

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V GK    +   L G F   NAL A   C+ +G     + + + +   VPGR E V T +
Sbjct: 282 VTGKLAGHYDIQLIGSFNQENALAAGLACLRLGTSPEDIKKGIAE-TSVPGRME-VITQA 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
            G +++VDYAH  +SLE +L  +    +G + ++ G  G++ + +R    ++     ++ 
Sbjct: 340 NGAKVFVDYAHNGDSLEKLLSVVEEHQTGNLHLILGATGNKGESRRADFARVINAHPNLQ 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDP+ I  EI   +   +E   +R +AI  A+ +     D +++AGKG +
Sbjct: 400 VILTADDPNYEDPKAIAEEIASQVNRPLEIEVDREKAIAKAMSLTQTADDAVIIAGKGAD 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
              IV       + D +I ++ L 
Sbjct: 460 AYQIVNGERTAYAGDMNIAKKYLN 483


>gi|313680446|ref|YP_004058185.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
 gi|313153161|gb|ADR37012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
          Length = 477

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/510 (27%), Positives = 223/510 (43%), Gaps = 49/510 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L              F +   + ++  V+ DSR ++ G+++VA+ G + DGH F 
Sbjct: 1   MTLRELFAP-----------FGLAAPDVEVRGVTHDSRRVEPGFVYVALPGRRFDGHAF- 48

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLSLFASRLYGKHPENIL 118
                    A  V+        +  +    P L +  T  R  L+  A+  +G+  E + 
Sbjct: 49  --------VADAVARGAVAVAGARALSPGVPYLRLPETELRPALARLAAEFHGRPSEKLW 100

Query: 119 AVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSF---AQDNRLTTPSPIYLAKA 173
               T       +   +  +   SG  +  IG     +       +   TTP    +   
Sbjct: 101 VAGVTGTDGKTTTTFLLHHLLASSGRRTGMIGTVGYDAGAGLAFPEGHFTTPEAPEVQGL 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +   G+TH  +EASSH L QHRLD +      +T+L  +H+D+H   + YF AK  L
Sbjct: 161 LARMVEGGLTHAVLEASSHALAQHRLDAVDFDLAVWTHLSPEHLDFHGDMEGYFRAKALL 220

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E        A++     Y+  ++ R H      LS G  G+F  L +V           
Sbjct: 221 VER----ARLAVLNTACPYAMRLVHRPH------LSYGPGGEF-ELLEVHEEAAGLAFAF 269

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +     F+   P+ G +   NAL A       G+        L +   VPGR + V T  
Sbjct: 270 ASPEGRFETRLPMLGRYNAENALAALAAAYTAGVSPERAAAELPRFAGVPGRMQIVRTE- 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              R+ VD+AHT   L   L  +R  T GR++VV G  G+RD GKR  +G+ A++LAD+A
Sbjct: 329 -PFRVVVDFAHTPKGLAATLSALRPTTEGRLVVVVGSAGERDPGKRAPLGRTAVELADLA 387

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + T+++ RSE  E+I AE+  G           ++ + +R  AI  A E+    D +V+A
Sbjct: 388 VFTEEDSRSEPVEEILAELARGAEEASGREGKDYLLEPDRGRAIALAFELARPDDTVVLA 447

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           GKGHE      N       +  + R++LGL
Sbjct: 448 GKGHERTLERENETLPW-NEAALARKLLGL 476


>gi|225871120|ref|YP_002747067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225700524|emb|CAW94989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 481

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/502 (25%), Positives = 223/502 (44%), Gaps = 38/502 (7%)

Query: 3   LQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L  ++ KD  F E+++Q   +   +   + + +S DSR      +F A  G+      F+
Sbjct: 7   LLTILKKDHNFREVLDQ-DGYHFNYSGLQFDSLSYDSRQADEQTLFFA-KGSAFK-ADFL 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENIL 118
            QAIA+G    V    Y +           P+++V+N +  +SL A   Y        +L
Sbjct: 64  RQAIAKGLRLYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQNKLKLL 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
           A TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++  
Sbjct: 115 AFTGTKGKTTAAYFAYHMLKESHKPALLSTMNTTLDGQHFFKSQLTTPESLDLFAMMAQC 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            + G+TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K  L E
Sbjct: 175 VANGMTHLVMEVSSQAYLVGRIYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME 234

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ +   +   + ++  +        G             +  +Q  +   
Sbjct: 235 N----SRAVVVNSGMEHFNILAEQVADKPHDFYGKG---------ACNRLLQRQAFSFQA 281

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GK   D+   L G F   NA+ A   C+ +G     + + + K   VPGR E +   ++
Sbjct: 282 AGKVAGDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRQGIAK-TNVPGRMEVLTMTNQ 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-A 413
             +++VDYAH  +SLE +L  +     G+I ++ G  G++ + +R   G++     ++  
Sbjct: 341 -AKVFVDYAHNGDSLEKLLSVVEEYQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRI 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHET 471
           I+T D+P  EDP+ I  EI   I   ++   +R EAI+T +E    +QD L++AGKG + 
Sbjct: 400 ILTADDPNFEDPQLISEEIASYIHREVDIIIDRKEAIKTGMERCQNEQDALIIAGKGADA 459

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             IV   +   + D  I +  L
Sbjct: 460 YQIVKGQKTAYAGDLAIAKSYL 481


>gi|225867965|ref|YP_002743913.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225701241|emb|CAW98198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 481

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 128/502 (25%), Positives = 223/502 (44%), Gaps = 38/502 (7%)

Query: 3   LQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L  ++ KD  F E+++Q   +   +   + + +S DSR      +F A  G       F+
Sbjct: 7   LLTILKKDHNFREVLDQ-DGYHFNYSGLQFDSLSYDSRQADEQTLFFA-KGATFK-ADFL 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118
            QAIA+G +  V    Y +           P+++V+N +  +SL A   Y   +H   +L
Sbjct: 64  KQAIAKGLKIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLL 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
           A TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++  
Sbjct: 115 AFTGTKGKTTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFKSQLTTPESLDLFAMMAQC 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            + G+TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K  L E
Sbjct: 175 VANGMTHLVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME 234

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ +   +   + ++  +        G             +  +Q  +   
Sbjct: 235 N----SRAVVVNSGMEHFNILAEQVADKPHDFYGKG---------ACNRLLQRQAFSFQA 281

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GK   D+   L G F   NA+ A   C+ +G     + + + K   VPGR E +   ++
Sbjct: 282 AGKLAGDYAIQLIGSFNQENAMAAGLACLRLGASLKDIRQGIAK-TRVPGRMEVLTMTNQ 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IA 413
             ++ VDYAH  +SLE +L  +     G+I ++ G  G++ + +R   G++     +   
Sbjct: 341 -AKVVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVHI 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHET 471
           I+T D+P  EDP+ I  EI   I   ++   +R EAI+T +E    K+D L++AGKG + 
Sbjct: 400 ILTADDPNFEDPQLISEEIASYIHREVDIIIDRKEAIKTGMERCQSKEDALIIAGKGADA 459

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             IV   +   + D  I +  L
Sbjct: 460 YQIVKGQKAAYAGDLAIAKSYL 481


>gi|205372805|ref|ZP_03225615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus coahuilensis m4-4]
          Length = 443

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 136/450 (30%), Positives = 220/450 (48%), Gaps = 32/450 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG---NKEDGH 57
           MKL  L+ KD  +    L+  P      +I+++  DSR ++   +++ + G      D H
Sbjct: 1   MKLSHLL-KDLTQYT--LTGNPT----IEISQIEMDSRRVKNQCMYICVPGIEGFLADRH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
            +I QAI  GA AI+V            + S+  ++ V++ R   S  A+  + +  +  
Sbjct: 54  DYIDQAIENGAHAILVEKEVD-------VPSHITVVRVEDVRLAFSKIATVFHNEAYKQL 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
            I+ +TGT+GK++    V+++   +GL +  +G   T I+       L T  P  L +  
Sbjct: 107 KIIGLTGTNGKTTTTFLVEKLLNDAGLKTGLMGNLGTKINGIMYPTELNTQEPHTLHRNF 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +  + + +  +E SS G+D  R+ G+    G  TNL  DH+DYH T   Y ++K +LF
Sbjct: 167 AKMVEEDMEYCVMEVSSQGIDMGRMKGVPFYRGILTNLTHDHLDYHGTVDHYMHSKSQLF 226

Query: 235 EELLPKESP---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             L   E     AI+  DD         +       +S G   +   ++      NK  +
Sbjct: 227 THLEEFEGEKPLAILNKDDDSYAYFKNASRG---ETISYGID-QDSIVQASELHFNKNGI 282

Query: 292 TISVEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              V  K    + +   PL G+F VYNAL A  +   +G+        LE L  +PGR E
Sbjct: 283 HFKVTNKRSLEEQEIHLPLVGKFNVYNALAAITVAYTVGVTLEESKRSLENLSQIPGRME 342

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              T + G  + VDYAHT ++LE +L+++++   G++I V GCGG+RD+ KRPIMGKIA 
Sbjct: 343 SFTT-ANGVTVIVDYAHTPDALENVLQSLKSSLDGKLITVVGCGGNRDENKRPIMGKIAA 401

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           + +D    T DNPR E PE+I   ++ G  
Sbjct: 402 ECSDYVYFTSDNPRFEQPEQILEGMVAGAK 431


>gi|195978717|ref|YP_002123961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975422|gb|ACG62948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           MurE [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 481

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 128/502 (25%), Positives = 222/502 (44%), Gaps = 38/502 (7%)

Query: 3   LQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L  ++ KD  F E+++Q   +   +   + + +S DSR      +F A  G       F+
Sbjct: 7   LLTILKKDHNFREVLDQ-DGYHFNYSGLQFDSLSYDSRQADEQTLFFA-KGATFK-ADFL 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118
            QAIA+G +  V    Y +           P+++V+N +  +SL A   Y   +H   +L
Sbjct: 64  KQAIAKGLKIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLL 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
           A TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++  
Sbjct: 115 AFTGTKGKTTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFKSQLTTPESLDLFAMMAQC 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            + G+TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K  L E
Sbjct: 175 VANGMTHLVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME 234

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ +   +   + ++  +        G             +  +Q  +   
Sbjct: 235 N----SRAVVVNSGMEHFNILAEQVADKPHDFYGKG---------ACNRLLQRQAFSFQA 281

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GK   D+   L G F   NA+ A   C+ +G     +   + K   VPGR E +   ++
Sbjct: 282 AGKLAGDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRLGIAK-TRVPGRMEVLTMTNQ 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-A 413
             +I VDYAH  +SLE +L  +     G+I ++ G  G++ + +R   G++     ++  
Sbjct: 341 -AKIVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRI 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHET 471
           I+T D+P  EDP+ I  EI   I   ++   +R EAI+  +E    +QD L++AGKG + 
Sbjct: 400 ILTADDPNFEDPQLISEEIASYIHREVDIIIDRKEAIKAGMERCQNEQDALIIAGKGADA 459

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             IV   +   + D  I +  L
Sbjct: 460 YQIVKGQKTAYAGDLAIAKSYL 481


>gi|330813728|ref|YP_004357967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486823|gb|AEA81228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 464

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 234/463 (50%), Gaps = 16/463 (3%)

Query: 34  SSDSRHIQAGWIFVAIVGNKE--DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           S+D+R ++   IF  + G+K   DG  +  +A+ +    I+  +            S   
Sbjct: 14  SADTRTLRKSEIFFDL-GSKSNKDG-DYFFKALKKKPLFIITQN-------QKRNLSGKN 64

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++V N   F     S  + K P+  +AVTGT+GK+SVA F  +I    G+    IG   
Sbjct: 65  FIIVKNIYSFYVKSISLKFKKKPKYKIAVTGTNGKTSVAFFYYKILNLLGIKVGSIGTLG 124

Query: 152 TISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              +  +     TTP      K L++   + + H  +EASSHGL Q+RL+ I    G FT
Sbjct: 125 VFENTKKSKGNLTTPDFFSNHKNLNHFYKKRINHSIIEASSHGLKQNRLEKINFDCGIFT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL  DH+DYH+T + Y N+K+ LF++L+ K    +  ++      + K + N    +LS 
Sbjct: 185 NLTHDHLDYHRTMKDYLNSKLILFKKLIKKNGFLVTGSEVLEFSLLNKISKNKKLNLLSY 244

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +G  I +          ++ I++ GK       L G FQ+ N L A   C + GI   
Sbjct: 245 GRKGNIIKIISSKPNGQFTKLKINILGKVHTLKLKLIGNFQIENFLAATLACYSSGISFE 304

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +     ++   PGR +     ++   + +DYAHT ++LE  +  I+   + +I +VFGC
Sbjct: 305 KIFRICSRIDNPPGRLQLFKKQNK--TVIIDYAHTPDALEKTIIEIQKFFNKKINIVFGC 362

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGDRD  KR  MGKIA  L +   +TDDNPR E+  KIR +I  G P  I   +R +AI+
Sbjct: 363 GGDRDHQKRKAMGKIAYKLCNKIYITDDNPRYENARKIRMQIKAGCPNAIVVPSRKQAIK 422

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++I MLN++ +L++AGKGHE   ++ N +K    D   +   L
Sbjct: 423 SSISMLNEE-ILLIAGKGHEEFQLIKN-KKIAFSDHHCVTRYL 463


>gi|55820442|ref|YP_138884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMG 18311]
 gi|55822326|ref|YP_140767.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus CNRZ1066]
 gi|81559795|sp|Q5M1B4|MURE_STRT1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81560965|sp|Q5M5V0|MURE_STRT2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|55736427|gb|AAV60069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus LMG 18311]
 gi|55738311|gb|AAV61952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus CNRZ1066]
          Length = 481

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 128/500 (25%), Positives = 219/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ KD  F ++INQ   +   W     + +S DSR I    +F A  G       F+  
Sbjct: 9   EVLKKDHNFRDIINQ-EHYHYSWTGVTFDHLSYDSRDITPSTLFFA-KGAGFK-LEFLES 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    V    Y +           P ++V + ++ +SL A   Y    + +  LA 
Sbjct: 66  AVQAGLGFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFYQHPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ + F   I ++S   +      +T+       + LTTP  + L + ++   S
Sbjct: 117 TGTKGKTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSNLTTPESLDLFRMMAEAVS 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L    
Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL---- 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      I+ +   +   V +   +             F        + +    +   +G
Sbjct: 233 LKNSQAVIVNSGMNHFDFVAEEVADK---------DHDFYGKDSENTVKHSSGFSFKAKG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G+F   NA+ A   C+ +G     + + + +   VPGR E + T + G 
Sbjct: 284 KLAGDYDIQLIGDFNQDNAMAAGLACLRLGASLEDIKKGIAQ-TSVPGRMEIL-TQANGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     +I  I+
Sbjct: 342 KVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYPEINVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVH 473
           + D+P  EDP  I  EI   I   +    +R EAI+TA+ E     D LV+AGKG +   
Sbjct: 402 STDDPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGKGADAFQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV       + D ++ ++ L
Sbjct: 462 IVNGKRTDYAGDIEVAKKYL 481


>gi|76787595|ref|YP_330032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae A909]
 gi|77411511|ref|ZP_00787855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
 gi|123601572|sp|Q3K0C1|MURE_STRA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|76562652|gb|ABA45236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae A909]
 gi|77162437|gb|EAO73404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
          Length = 484

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 129/503 (25%), Positives = 218/503 (43%), Gaps = 37/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++  D  F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  AI  G    V    Y          ++ P+++V++ +K +SL +   Y        +
Sbjct: 64  LDSAITAGLSFYVSEIDYG---------ADIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      +T+       + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
                +TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K    
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFFHK---- 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL + S A++         ++K                 F        I   Q  +  
Sbjct: 231 -RLLMENSNAVVVNSQMDHFNIVKEQVEYIPH--------DFYGDYSENVITESQAFSFH 281

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V+GK +  +   L G+F   NA+ A   C+ +G+    +   + +   VPGR E V T +
Sbjct: 282 VKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRME-VLTQT 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
            G +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++ 
Sbjct: 340 NGAKIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQ 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDP  I  EI   I   +    +R EAI  A  + N K D +++AGKG +
Sbjct: 400 VILTADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGAD 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+       S D ++ ++ L
Sbjct: 460 AYQIIKGNHDNYSGDLEVAKKYL 482


>gi|307706212|ref|ZP_07643029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
 gi|307618402|gb|EFN97552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
          Length = 481

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 133/500 (26%), Positives = 216/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   +     + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDGLFREIIDQ-GYYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLIS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P ++V + +K +SL A   YG   + +  LA 
Sbjct: 66  AISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      +T+       + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQEHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      L
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + S A+I   D     V+K                 F   +    I N +  + S  G
Sbjct: 232 LMENSRAVIINSDMDHFSVLKEQVA--------DQDHDFYGSQSNNQIENSKAFSFSATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +
Sbjct: 342 KVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   
Sbjct: 402 TADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   ++    D  +    L
Sbjct: 462 IVQGKKEVYPGDAAVAENYL 481


>gi|126435850|ref|YP_001071541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. JLS]
 gi|126235650|gb|ABN99050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mycobacterium sp. JLS]
          Length = 508

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 169/510 (33%), Positives = 246/510 (48%), Gaps = 25/510 (4%)

Query: 1   MKLQD--LIYKDFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MKL+    +      L  Q+   P       + ++  V+   +    G +F A+ G+   
Sbjct: 3   MKLRPSHPVGHALGALAEQVQAVPAPGFPVPDIRVTGVTLRGQDALPGDLFAALPGSSAH 62

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F+  A+A GA A++  +A ++   +  +    P+LV  + R  L   AS +YG   +
Sbjct: 63  GARFVADAVAAGAVAVLTDAAGAVMLGADPV---VPVLVHPDPRAVLGAVASTVYGHPSQ 119

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
              ++ VTGTSGK++    V+   + +G  +  IG     I    Q + LTTP    L  
Sbjct: 120 HLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQA 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+ +  QGV  V +E SSH L   R+DG+   AG FTNL RDH+D+H T + YF+AK  
Sbjct: 180 LLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAG 239

Query: 233 LFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ- 290
           LF+ +   +   A++  DD   + +  RA  A    +S   +      + V A+    Q 
Sbjct: 240 LFDPQSRTRAELAVVCVDDDAGRAMAIRAGRAV--TVSASGRPADWRAEDVRAVEAGAQE 297

Query: 291 -VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            V +   G        LPG + V N L+AA L  A+ +        L     VPGR E V
Sbjct: 298 FVAVDPAGVHHGLRIALPGHYNVANCLLAAALLDAVDVSPEQAAPGLRT-ATVPGRLEAV 356

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +     VDYAH   +L  +L+ +R   +GRI VVFG GG+RD GKR  MG++A +L
Sbjct: 357 D-RGQDFLALVDYAHKPGALRAVLETLRGQGTGRIAVVFGAGGNRDAGKREPMGRVAAEL 415

Query: 410 ADIAIVTDDNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AD+ +VTDDNPR EDP  IR      A    G    +E G+R EAI  A+      DV++
Sbjct: 416 ADLVVVTDDNPRDEDPATIRAAIMAGARAAGGGADVVEVGDRREAIAHAVRWARSGDVVL 475

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           VAGKGHET      G      D   + E+L
Sbjct: 476 VAGKGHETGQT-AAGRTHPFDDRVELAELL 504


>gi|307708388|ref|ZP_07644854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
 gi|307615487|gb|EFN94694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
          Length = 481

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 216/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   +     + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNYSHVIFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLIS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P ++V + +K +SL A   YG   + +  LA 
Sbjct: 66  AISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++ A F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTAAYFAYNILSQ-GHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQSDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEIRSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            IV   ++    D  +    L
Sbjct: 461 QIVQGKKEAYPGDAAVAENYL 481


>gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
 gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
          Length = 607

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 144/505 (28%), Positives = 237/505 (46%), Gaps = 46/505 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                ++  +S DSR ++   ++VA+ G K  G  F   A+  GA AI+  +A +     
Sbjct: 83  SGESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGE 142

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQQICQR- 139
           A      P+LV +N R+++   A+ +YG       +  AVTGT+GK++    ++ + +  
Sbjct: 143 AP----VPVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVFRTG 198

Query: 140 SGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G+ +  IG     I   +  +++TTP   ++   L+ +    V   ++E SSH +D HR
Sbjct: 199 LGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHR 258

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +DG+K     FTNL +DH+D H T + YF++K +LF     +   A+I ADD + +++  
Sbjct: 259 VDGVKYAVAGFTNLTQDHLDLHGTMEHYFDSKAQLFTP--ERAELAVITADDEWGEKMFS 316

Query: 259 RAHNAG-----CRVLS----------VGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDF 302
            A          R+++            +  +   + KV       +  +    G+  + 
Sbjct: 317 AACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVDNGAGESVEC 376

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-------HVVPGRFEFVGTNSRG 355
              LP +F V NA + A L   +  DSA     L +L        VVPGR + +      
Sbjct: 377 YTGLPADFNVSNAAL-AALMAYLDTDSAERERLLPELASGSALTPVVPGRMQLISLAPH- 434

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               VD+AH  + L   L+ +     G++++VFG  G+RDQ KRPIMG IA   ADI +V
Sbjct: 435 --AIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATGERDQLKRPIMGAIAAQYADIVVV 492

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           TDD+P  E PE IRA +  G            +    R  AI  AI +  + D +++AG+
Sbjct: 493 TDDDPHGEAPEPIRAAVEEGAQKAENRRATQILNISPRAAAIDAAIALAGEHDAILIAGR 552

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHET   V   +  +    +  R +
Sbjct: 553 GHETEQDVDGVDIALDDRVETARAL 577


>gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 552

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 129/505 (25%), Positives = 234/505 (46%), Gaps = 27/505 (5%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +D  EL  +  +  +   E   +  ++  +  ++AG  FVAI G    G  F   A  +G
Sbjct: 21  RDLAELARRFGVRSVGEVEGTTLTGITLATADLRAGEAFVAIRGVNRHGAEFAATAAERG 80

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGT 123
           A A++  +  +         +  PI++V++ R  L   ++ +YG  P++    +LA TGT
Sbjct: 81  AVAVITDAEGA----EIAASTGLPIVIVEDPRALLGDLSAWVYGTGPDDDIPQLLATTGT 136

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+SV+  ++ I  + G+ +         I+     +RLTTP        L+ +  +GV
Sbjct: 137 NGKTSVSHLLEGILGQLGVVTGLSSTAERHIAGEVIVSRLTTPEASEFHALLALMRERGV 196

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V+VE S+  L +HR+DG+      FTNL  DH+D +   + YF AK+ LF     +  
Sbjct: 197 EAVAVEVSAQALTRHRVDGLVFDVAGFTNLTHDHLDDYADMREYFEAKLPLFRADRARRG 256

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISV-E 296
              +  D A   E++ RA      +++              +  V       + T+   +
Sbjct: 257 V--VCLDSASGAEIVARAEIPVVTIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARD 314

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE--KLHVVPGRFEFVGTNSR 354
           G+    + P+ G     NA +A  + +  G     +++ L+  ++         + +   
Sbjct: 315 GRALTTVVPVIGRHMAANAGLAIVMLLETGYAWERLVDALDGGRIDASLPGRTQLVSGPE 374

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +YVD+ H+ ++ E  L  +R +T G+++++FG  GDRD  KR  MG+ A+  +DI +
Sbjct: 375 GPAVYVDFGHSPDAFEKTLAAVRRVTPGKVVMLFGADGDRDATKRHDMGRTAVLGSDILV 434

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIEMLNKQDVLVVAGKG 468
           VTD +PR EDP+ IRA ++ G          +E      AI  A++++ + D ++ AG G
Sbjct: 435 VTDHHPRHEDPDAIRAVLVEGARRARPDAEILEFTPPERAILEAVKLVGEGDAILWAGPG 494

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           H+    +       S   ++ R  L
Sbjct: 495 HQDYRDIRGVRTPYSA-RELSRRAL 518


>gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 541

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 142/493 (28%), Positives = 237/493 (48%), Gaps = 35/493 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +S DSR I  G +++A+ G++  G  F   A+A GA AI+   A + Q  SA +  
Sbjct: 41  QVTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAVAILTDRAGA-QIASAEVPQ 99

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P+L V   R      A+++Y +   ++  +TGT+GK++ +  ++ I      SS  IG
Sbjct: 100 HVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTSYLIRSILAALERSSGLIG 159

Query: 149 PTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               ++      + LTTP    +   ++ ++ + +  V +E SSH L   R+DG+     
Sbjct: 160 TIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEVSSHALAYGRVDGLVFDVA 219

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR- 266
            FTNL +DH+D H T   Y   K  LF     +   A++  DD + +++  RA     R 
Sbjct: 220 GFTNLTQDHLDLHGTMAEYAATKAELFSSR--RSKRAVVTVDDQWGRQIAARADVPVLRL 277

Query: 267 ----VLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEG--KDFDFLFPLPGEFQVYNALV 317
                 +         + K   +    ++ +     +G  + F F   LPGEF + N+ +
Sbjct: 278 QIQPTETPLEDPSDWRVLKSEPLGLGWRIELHGFEADGAERSFKFTTSLPGEFNIANSAL 337

Query: 318 AAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           A  +  A G+D+  +   L++       VPGR + +   S+     VD+AH  ++L+  +
Sbjct: 338 AVLMVYASGVDTGALQRALDEHDPLSINVPGRMQLI---SQEPVAVVDFAHNPDALQRAM 394

Query: 374 KNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +R     T GR+I VFG  G RDQ KRPIMG +A   +D+ I+TDD+P  EDPE+IR 
Sbjct: 395 DAVRPNNNETRGRLITVFGATGQRDQTKRPIMGALAARGSDVVIITDDDPHDEDPEQIRD 454

Query: 431 EIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           ++  G    ++ G           R  AI  A+ +  K D +++AG+GHE    V     
Sbjct: 455 QVFDGAAKAVKAGQLDTVLELVAPRAAAIDRAVALAGKDDAILIAGRGHENWQEVQGVNI 514

Query: 481 KMSVDCDIIREIL 493
            +  D D +R  L
Sbjct: 515 AL-DDRDELRRAL 526


>gi|76797685|ref|ZP_00779954.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
 gi|76586979|gb|EAO63468.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
          Length = 484

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 128/503 (25%), Positives = 218/503 (43%), Gaps = 37/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++  D  F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  AI  G    V    Y          ++ P+++V++ +K +SL +   Y        +
Sbjct: 64  LDSAITAGLSFYVSEIDYG---------ADIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      +T+       + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
                +TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K    
Sbjct: 175 AVENQMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFFHK---- 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL + S A++         ++K                 F        I   +  +  
Sbjct: 231 -RLLMENSNAVVVNSQMDHFNIVKEQVEYIPH--------DFYGDYSENVITESKAFSFH 281

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V+GK +  +   L G+F   NA+ A   C+ +G+    +   + +   VPGR E V T +
Sbjct: 282 VKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRME-VLTQT 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
            G +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++ 
Sbjct: 340 NGAKIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQ 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDP  I  EI   I   +    +R EAI  A  + N K D +++AGKG +
Sbjct: 400 VILTADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGAD 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+       S D ++ ++ L
Sbjct: 460 AYQIIKGNRDNYSGDLEVAKKYL 482


>gi|319745329|gb|EFV97644.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 484

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 129/503 (25%), Positives = 218/503 (43%), Gaps = 37/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++  D  F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  AI  G    V    Y          ++ P+++V++ +K +SL +   Y        +
Sbjct: 64  LDSAITTGLSFYVSEIDYG---------ADIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      +T+       + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
                +TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K    
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFFHK---- 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL + S A++         ++K                 F        I   Q  +  
Sbjct: 231 -RLLMENSNAVVVNSQMDHFNIVKEQVEYIPH--------DFYGDYSENVITESQAFSFH 281

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V+GK +  +   L G+F   NA+ A   C+ +G+    +   + +   VPGR E V T +
Sbjct: 282 VKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRME-VLTQT 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
            G +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++ 
Sbjct: 340 NGAKIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQ 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDP  I  EI   I   +    +R EAI  A  + N K D +++AGKG +
Sbjct: 400 VILTADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGAD 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+       S D ++ ++ L
Sbjct: 460 AYQIIKGNRDNYSGDLEVAKKYL 482


>gi|312864606|ref|ZP_07724837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
 gi|311099733|gb|EFQ57946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
          Length = 483

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 220/501 (43%), Gaps = 38/501 (7%)

Query: 5   DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++   K+F ++  Q   +   W     + +S DSRH+    +F A  G       F+  
Sbjct: 9   DILKQDKNFRDIAYQ-GDYAYNWSGVTFDHLSYDSRHVTPSSLFFA-KGAVFK-KEFLQG 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+ +G    +    Y +           P ++V++ ++ +SL A   Y    + +  LA 
Sbjct: 66  AVEKGLAFYIAEKDYEV---------GIPAILVNDIKQAMSLIAMAFYDNPQDKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      +T+       ++LTTP  + L + ++    
Sbjct: 117 TGTKGKTTAAYFAYNIFKQSQKPAMLSTMNTTLDGETFFKSQLTTPESLDLFEMMAQAVE 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G +H+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L E  
Sbjct: 177 NGRSHLIMEVSSQAFLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMEN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++ +   +   +  +                F        I N +     + G
Sbjct: 236 ---SRAVVVNSGMDHFAILRDQVA---------SIPHDFYGELSDNQIKNSRAFDFDLTG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G+F   NAL A   C+ +G   A +   + +   VPGR E V T + G 
Sbjct: 284 KLAGHYDIQLIGDFNQENALAAGLACLRLGASPADIQRGIAE-TTVPGRME-VLTQTNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SL+ +L  +    SG+ I++ G  G++ + +R   G +     D+  I+
Sbjct: 342 KVFVDYAHNGDSLKKLLSVVAQHQSGKNILILGAPGNKGESRRADFGAVINHHPDLEVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           + D+P  EDP+ I  EI   I   +E   +R +AI+TA+++    QD +++AGKG +   
Sbjct: 402 SADDPNKEDPQVICQEIASHIKRPVEIIVDREKAIKTALQLTQTAQDAVIIAGKGADAFQ 461

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           IV       + D  I ++ L 
Sbjct: 462 IVDGKRASYAGDLAIAKKYLN 482


>gi|322517405|ref|ZP_08070279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322124003|gb|EFX95559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 481

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 120/493 (24%), Positives = 215/493 (43%), Gaps = 36/493 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F ++I+Q + +   W     + +S DSR +    +F A  G       F+  A+  G  
Sbjct: 16  NFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA-KGAAFK-PEFLENAVQAGLS 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
             V    Y +           P ++V + ++ +SL A   Y    + +  LA TGT GK+
Sbjct: 73  FYVAEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVS 186
           + A F   I ++S   +      +T+          TTP  + L + ++   + G+TH+ 
Sbjct: 124 TAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFKSTLTTPESLDLFRMMAEAVANGMTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS      R+ G+    G F N+  DHI    H T + YF  K  L    L      
Sbjct: 184 MEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL----LENSRAV 239

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I+ +   +   V +   +             F        + +    +   +GK   D+ 
Sbjct: 240 IVNSGMNHFGFVAEEVADK---------DHDFYGKDSENTVKHSSGFSFKAKGKLAGDYD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+F   NA+ A   C+ +G     + + + +   VPGR E + T + G +++VDYA
Sbjct: 291 IQLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQ-TSVPGRMEIL-TQANGAKVFVDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRS 422
           H  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     ++   ++ D+P  
Sbjct: 349 HNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDVTLSADDPNK 408

Query: 423 EDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVTNGEK 480
           EDP  I  EI   I   +    +R EAI+TA+ E  + +D +V+AGKG +   IV     
Sbjct: 409 EDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADAFQIVNGKRT 468

Query: 481 KMSVDCDIIREIL 493
             + D ++ ++ L
Sbjct: 469 DYAGDIEVAKKYL 481


>gi|319440251|ref|ZP_07989407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium variabile DSM 44702]
          Length = 549

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 145/519 (27%), Positives = 221/519 (42%), Gaps = 40/519 (7%)

Query: 2   KLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +L +L      ++      +   +  ++ +   + D+R + A  +F+A+ G +  G  F 
Sbjct: 19  QLAELTGGRLVDVAGTAAGVASAEQGQQTVATAAIDARDVPADGLFMAVPGTRAHGARFA 78

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            Q  + G   ++                    LVVD+ R++L   A+ ++G    ++  +
Sbjct: 79  GQ--SAGHS-VLTDEEG--LGVLVDGSWQGTALVVDDCRQWLGPVAAEIHGHPSRDMTVI 133

Query: 121 TGTSGKSSVASFVQQICQRSGLSS-FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
             T       +         G      IG T T I        LTTP    L    + + 
Sbjct: 134 GVTGTSGKTTTTYMMERALLGHRHVGLIGTTGTRIDGRKIPTSLTTPEAPTLQALFARMR 193

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GVTHV +E SSH L   R+ G+      FTNL +DH+D+H T + YF+AK  LF E  
Sbjct: 194 DEGVTHVVMEVSSHALVLGRVRGVDFDVAGFTNLSQDHLDFHPTMEDYFDAKSMLFTEPQ 253

Query: 239 PKES---PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++  DD + + +  R  +A   V + G    +            Q VT+  
Sbjct: 254 DPAGELPVPVVCVDDEWGRRLAGRTGDATVTVSTDGEAATWQVSDVAVHPDGTQHVTVDR 313

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GT 351
                ++   +PG F V NA +A    +A G D+++  E  E    VPGR E +      
Sbjct: 314 ADGQVEYDLSIPGAFNVANATLALATLVAAGEDASIADELAE--VSVPGRMEKISGSSPQ 371

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI-----------TSGRIIVVFGCGGDRDQGKRP 400
            +      VDYAH   ++  +L  +              T GR+ VV G GG+RD  KRP
Sbjct: 372 TAVDFLALVDYAHKPGAVTAVLDTLNGQLDRAAAGGNGATRGRLGVVLGAGGNRDHEKRP 431

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------------PGFIEKGNRIEA 448
            MG  A  +AD+ IVTDDNPR EDP  IRA ++ G             P   E G+R EA
Sbjct: 432 KMGAAAAAVADLVIVTDDNPRDEDPATIRAAVLAGAGDAAAQRTDGVSPEIREIGDRAEA 491

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           IR A+      DV+VVAGKGHE+  I+ +         +
Sbjct: 492 IRDAVGWARSGDVVVVAGKGHESGQIIGDTVVDFDDRVE 530


>gi|312862991|ref|ZP_07723230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
 gi|311101486|gb|EFQ59690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
          Length = 481

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 120/493 (24%), Positives = 214/493 (43%), Gaps = 36/493 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F ++I+Q + +   W     + +S DSR +    +F A  G       F+  A+  G  
Sbjct: 16  NFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA-KGAAFK-PEFLENAVQAGLS 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
             V    Y +           P ++V + ++ +SL A   Y    + +  LA TGT GK+
Sbjct: 73  FYVAEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVS 186
           + A F   I ++S   +      +T+          TTP  + L + ++     G+TH+ 
Sbjct: 124 TAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFKSNLTTPESLDLFRMMAEAVDNGMTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS      R+ G+    G F N+  DHI    H T + YF  K  L E         
Sbjct: 184 MEVSSQAYLTKRVYGLIFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLEN----SRAV 239

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I+ +   +   V +   +             F        + +    +   +GK   D+ 
Sbjct: 240 IVNSGMNHFGFVAEEVADK---------DHDFYGKDSENTVKHSSGFSFKAKGKLAGDYD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+F   NA+ A   C+ +G     + + + +   VPGR E + T + G +++VDYA
Sbjct: 291 IQLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQ-TSVPGRMEIL-TQANGAKVFVDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRS 422
           H  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     ++   ++ D+P  
Sbjct: 349 HNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDVTLSADDPNK 408

Query: 423 EDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVTNGEK 480
           EDP  I  EI   I   +    +R EAI+TA+ E  + +D +V+AGKG +   IV     
Sbjct: 409 EDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADAFQIVNGKRT 468

Query: 481 KMSVDCDIIREIL 493
             + D ++ ++ L
Sbjct: 469 DYAGDIEVAKKYL 481


>gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
 gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
          Length = 581

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 144/505 (28%), Positives = 237/505 (46%), Gaps = 46/505 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                ++  +S DSR ++   ++VA+ G K  G  F   A+  GA AI+  +A +     
Sbjct: 57  SGESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGE 116

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQQICQR- 139
           A      P+LV +N R+++   A+ +YG       +  AVTGT+GK++    ++ + +  
Sbjct: 117 AP----VPVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVFRTG 172

Query: 140 SGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G+ +  IG     I   +  +++TTP   ++   L+ +    V   ++E SSH +D HR
Sbjct: 173 LGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHR 232

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +DG+K     FTNL +DH+D H T + YF +K +LF     +   A+I ADD + +++  
Sbjct: 233 VDGVKYAVAGFTNLTQDHLDLHGTMEHYFESKAQLFTP--ERAELAVITADDEWGEKMFS 290

Query: 259 RAHNAG-----CRVLS----------VGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF 302
            A          R+++            +  +   + KV       +  ++   G+  + 
Sbjct: 291 AACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVANGVGESVEC 350

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-------HVVPGRFEFVGTNSRG 355
              LP +F V NA + A L   +  DSA     L +L        VVPGR + +      
Sbjct: 351 YTGLPADFNVSNAAL-AALMAYLDTDSAERERLLPELASGSALTPVVPGRMQLISLAPH- 408

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               VD+AH  + L   L+ +     G++++VFG  G+RDQ KRPIMG IA   ADI +V
Sbjct: 409 --AIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATGERDQLKRPIMGAIAAQYADIVVV 466

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           TDD+P  E PE IRA +  G            +    R  AI  AI +  + D +++AG+
Sbjct: 467 TDDDPHGEAPEPIRAAVEEGAQKAENRRATQILNISPRAAAIDAAIALAGEHDAILIAGR 526

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHET   V   +  +    +  R +
Sbjct: 527 GHETEQDVDGVDIALDDRVETARAL 551


>gi|86740116|ref|YP_480516.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
 gi|86566978|gb|ABD10787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
          Length = 544

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 156/483 (32%), Positives = 243/483 (50%), Gaps = 21/483 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--LQDFSA 84
           +  ++ V+ DS  ++ G +  A+ G    G  F   A+A GA A++  +  +  +     
Sbjct: 67  DVIVHGVTHDSHAVRPGDLHAALPGAHTHGAAFAAAAVAGGAVAVLTDAEGARRIAAMPP 126

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
                 P+LV D+ R+ L+  A+R+YG       +L VTGT+GK++ A  +    + +G 
Sbjct: 127 GPPGEVPVLVSDDPRRDLAPVAARIYGDPSAALRLLGVTGTNGKTTTAFLLDAGLRAAGH 186

Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++  IG   T I+     +  TTP    L   L+ +  +GV   ++E SSH L  HR D 
Sbjct: 187 TTGLIGTIETRIADERLASARTTPEASDLQALLATMVERGVGAATMEVSSHALALHRADA 246

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL +DH+D+H + + YF AK  LF+    + + A+I   D + + + +R  
Sbjct: 247 LHFAGAVFTNLSQDHLDFHSSMEDYFAAKASLFDP--ARTAVAVIGVADRWGRRLAERHP 304

Query: 262 NAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAA 319
            A    ++   +G      + V        +     +G   D   PLPG F V N L A 
Sbjct: 305 GA----ITFAVEGPADWTARDVSYGPTGTLLRAEGPDGLRVDLSVPLPGAFNVANTLGAL 360

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L +AIG+  A     +  L  VPGR E V    +     VD+AHT +++  +L+ +R +
Sbjct: 361 ALLVAIGVPPATAAAGIGSLPGVPGRMERVDA-GQPFLALVDFAHTPDAVTTLLETVRPL 419

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR+IVV GCGGDRD+GKRP+MG  A  LAD+AI+T+DNPRSEDP +I A+++ G+   
Sbjct: 420 VKGRVIVVLGCGGDRDRGKRPLMGAAAATLADVAILTNDNPRSEDPAEILAQMLAGVTAL 479

Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 + + +R  AI  A+     QD +VVAGKGHE+      G      D   +R  L
Sbjct: 480 SASATVLVEPDRAAAIAAAVAEAGPQDAVVVAGKGHESGQE-QAGVVTPFDDRVALRAAL 538

Query: 494 GLI 496
             +
Sbjct: 539 SSV 541


>gi|222152603|ref|YP_002561778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus uberis 0140J]
 gi|222113414|emb|CAR41085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus uberis 0140J]
          Length = 482

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 135/503 (26%), Positives = 233/503 (46%), Gaps = 38/503 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K  +L+ KD  F E+I+Q   +   +      ++S DSR + A  +F A  G +     +
Sbjct: 6   KTIELLKKDHNFREVIHQEHYY-FNYSGLSFQKLSYDSREVDADTLFFA-KGAQFK-VDY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI QG +A V    Y L         + P ++V + +K +S+ A   YG   E +  
Sbjct: 63  LKKAIDQGLQAYVSEIDYQL---------SIPAIIVSDIKKAMSIIAMTFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   I +++   +      +T+       ++LTTP  + L K ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHILKQNYKPAMFSTMNTTLDGQTFFKSQLTTPESLDLFKMMAS 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             S G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVSNGMTHIIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   + ++  +     +  G Q +        A+   Q    S
Sbjct: 234 EN----SRAVVINSGMDHFNILAEQVADK--DHVFYGDQSE-------NALTESQAFAFS 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V G+    +   L G F   NA+ A   C  +G     + E + +   VPGR E V ++ 
Sbjct: 281 VNGQIAGHYDIQLIGRFNQENAIAAGLACQKLGASHLDIHEGIAQ-TTVPGRME-VVSHP 338

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
            G +++VDYAH  +SLE ++  + T   G I ++ G  G++ + +R   G++  +  ++ 
Sbjct: 339 NGAKVFVDYAHNGDSLEKLVSVVETHQKGLISLIIGSTGNKGESRRADFGRVINNHPNLN 398

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLN-KQDVLVVAGKGHE 470
            I+T D+P  EDPE I  EI   +   +    +R +AI   ++  +   D L++AGKG +
Sbjct: 399 VILTADDPNFEDPETICQEIASHVNRHVSIIVDRQDAIIEGLKYCHTSGDALIIAGKGAD 458

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   +++ + D  I ++ L
Sbjct: 459 AYQIVNGKKEEYAGDLAIAKKAL 481


>gi|213965229|ref|ZP_03393426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
 gi|213952081|gb|EEB63466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
          Length = 524

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 237/486 (48%), Gaps = 39/486 (8%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            +  G +F A+ G +  G  +  Q     A A++           A      P+LVVD+ 
Sbjct: 38  DVPEGGMFAAVPGTRTHGARYAQQ---SAATAVLTDEEGLKILREAG--ETRPVLVVDDV 92

Query: 99  RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISS 155
           R  +   A+ +Y    +++  + VTGTSGK++    ++     +G S+  IG T T I+ 
Sbjct: 93  RAVMGHVAAEIYDHPSDSLTIIGVTGTSGKTTTTYMLEGALLAAGCSTGIIGTTGTRING 152

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
            A  + LTTP    L +    + S+GVTHV +E SSH L   R+DG+    G F NL +D
Sbjct: 153 RAVPSSLTTPEAPALQRLFHQMLSEGVTHVVMEVSSHALSLGRVDGVSFDVGCFLNLSQD 212

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAH-NAGCRVLSVGYQ 273
           H+D+H+T + YF AK +LF+   P  +P A++  DD +   +   A  +   +V +V  Q
Sbjct: 213 HLDFHKTLEEYFQAKAKLFDPAGPTHAPKAVVCIDDDWGVRMADIAAGDPDVQVTTVHTQ 272

Query: 274 -------------GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
                         ++       A +  Q V ++    D  +   PLPG F V NA VA 
Sbjct: 273 HRVTDKSPAAEVFAEWHAAAATVATNGVQHVELTRNNTDTVEVEVPLPGAFNVANAAVAW 332

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +  A+G         L ++  VPGR E +    +     VDYAH   ++  +L  +R  
Sbjct: 333 AVLDAVGHAKDAAKSGLAQVR-VPGRMERID-RGQDFLAVVDYAHKPAAVAEVLATLRAQ 390

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           T GR++VV G GGDRD  KRPIMG  A   AD+ I+TDDNPRSE P +IRA ++ G    
Sbjct: 391 TEGRVLVVVGAGGDRDSAKRPIMGAEAACGADVVIITDDNPRSEVPSEIRAAVVAGAKEA 450

Query: 440 I------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +            E G+R +AIR  +E+ +  D +VVAGKGHET   +  G      D +
Sbjct: 451 VASGKASSDTVVEEIGDRGQAIRRVVELAHSGDSIVVAGKGHETGQDI-GGVIHPFDDRE 509

Query: 488 IIREIL 493
            + E L
Sbjct: 510 QLAEAL 515


>gi|184201133|ref|YP_001855340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
 gi|183581363|dbj|BAG29834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
          Length = 546

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 151/500 (30%), Positives = 242/500 (48%), Gaps = 40/500 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V  +SR +Q G ++ A+ G +  G  F   A A GA A++   A       A +  +
Sbjct: 46  VTGVVLNSREVQPGDLYAALPGAQVHGARFAADAAAAGAVAVLTDPAGERLLDEAGV--S 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP-----ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            P+LV +  R ++   A+ +Y  HP     + + AVTGT+GK++   F   I +  G ++
Sbjct: 104 LPVLVSEQPRSWVGPVAAAVYDSHPGEEAGQELFAVTGTNGKTTTTYFTTAILRALGHTT 163

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG    +       +RLTTP   ++   L+ +  +G+T  ++E SSH L+ HR+DG+ 
Sbjct: 164 GLIGTIEILAGDTPIPSRLTTPEAPHVHSLLALMRERGITATAMEVSSHALEFHRVDGVH 223

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D H + + YF AK +LF       +  ++  +D +S  + +RA   
Sbjct: 224 YGVAGFTNLTQDHLDLHGSMEEYFEAKAQLFTRQRTSRAVVVLSDEDPWSGAMARRAREE 283

Query: 264 --GCRVLSV----------GYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEF 310
                V +V          G       L+ +          +   +G++      LPG+F
Sbjct: 284 LGDANVTTVALRGSEDAERGQDAAQWTLRSLTRRGIGSAFVLRHRDGRELRVHTGLPGDF 343

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTS 366
            V NA +A  + +  G++   +   L++       VPGR E VGT        VD+AH  
Sbjct: 344 NVANAALAVLMVLDSGVELETLQRALDEHDPLTASVPGRMELVGTR---PTSLVDFAHNP 400

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   L+++     GR+IVVFG  G RD GKRP+MG++A + AD+ IVTDD+P +EDP 
Sbjct: 401 DALVRALRSVDP-EDGRVIVVFGATGQRDTGKRPVMGRVAAEEADVVIVTDDDPHAEDPA 459

Query: 427 KIRAE----------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            IR +                  +    R  AIRTA+ M   +D ++VAG+GHETV  V 
Sbjct: 460 PIREQVAAGAREAVAAGARATDVLVIAPRATAIRTAVRMARAEDSVIVAGRGHETVQDVA 519

Query: 477 NGEKKMSVDCDIIREILGLI 496
             +  +  D   +RE L  +
Sbjct: 520 GVDVPL-DDRVELREALAQL 538


>gi|288905963|ref|YP_003431185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Streptococcus gallolyticus UCN34]
 gi|288732689|emb|CBI14261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gallolyticus UCN34]
          Length = 483

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 133/505 (26%), Positives = 220/505 (43%), Gaps = 39/505 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           K  D++  D  F E+I   + + + W+E    +++S DSR      +F A  G       
Sbjct: 6   KTLDILKNDHNFREIIFH-NHYSLDWKENPSFSKISFDSREADKSTLFFA-KGATFK-KE 62

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116
           ++ QAI  G    V    Y L         + P ++V + +K +SL A   YG       
Sbjct: 63  YLEQAIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLK 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
           I+A TGT GK++ A F   I ++S   +      +T+       ++LTTP  + L K ++
Sbjct: 114 IIAFTGTKGKTTAAYFAYNILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+TH+ +E SS      R+ G+    G+F N+  DHI    H T + YF  K  L
Sbjct: 174 TAVQNGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLL 233

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                      ++ A   Y   V ++  N        G             I N +    
Sbjct: 234 MAN----SKAVVVNAGMDYFNIVAQQVANTPHDFYGKGSDN---------TIENGRAFDF 280

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V GK    +   L G F   NA+ A   C+ +G   A + + + +   VPGR E V T 
Sbjct: 281 DVTGKLAGHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRME-VITQ 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD- 411
           + G +++VDYAH  +SLE +L  +     G + ++ G  G++ + +R    ++     + 
Sbjct: 339 TNGAKVFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNL 398

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGH 469
             I+T D+P  EDP+ I  EI   +   ++   +R +AI  A+   N + D +++AGKG 
Sbjct: 399 HVILTADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGA 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +   IV       + D +I +  L 
Sbjct: 459 DAYQIVNGERTAYAGDLNIAKNYLN 483


>gi|306831982|ref|ZP_07465137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425908|gb|EFM29025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 483

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 133/505 (26%), Positives = 220/505 (43%), Gaps = 39/505 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           K  D++  D  F E+I   + + + W+E    +++S DSR      +F A  G       
Sbjct: 6   KTLDILKNDHNFREIIFH-NHYSLDWKENPSFSKISFDSREADKSTLFFA-KGATFK-KE 62

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116
           ++ QAI  G    V    Y L         + P ++V + +K +SL A   YG       
Sbjct: 63  YLEQAIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLK 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
           I+A TGT GK++ A F   I ++S   +      +T+       ++LTTP  + L K ++
Sbjct: 114 IIAFTGTKGKTTAAYFAYNILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+TH+ +E SS      R+ G+    G+F N+  DHI    H T + YF  K  L
Sbjct: 174 TAVQNGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLL 233

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                      ++ A   Y   V ++  N             F        I N +    
Sbjct: 234 MAN----SKAVVVNAGMDYFNVVAQQVANTPH---------DFYGKDSDNTIENGRAFDF 280

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V GK    +   L G F   NA+ A   C+ +G   A + + + +   VPGR E V T 
Sbjct: 281 DVTGKLAGHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRME-VITQ 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD- 411
           + G +++VDYAH  +SLE +L  +     G + ++ G  G++ + +R    ++     + 
Sbjct: 339 TNGAKVFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNL 398

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGH 469
             I+T D+P  EDP+ I  EI   +   ++   +R +AI  A+   N + D +++AGKG 
Sbjct: 399 HVILTADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGA 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +   IV       + D +I +  L 
Sbjct: 459 DAYQIVNGERTVYAGDLNIAKNYLN 483


>gi|306834104|ref|ZP_07467224.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
 gi|304423677|gb|EFM26823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
          Length = 483

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 133/505 (26%), Positives = 220/505 (43%), Gaps = 39/505 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           K  D++  D  F E+I   + + + W+E    +++S DSR      +F A  G       
Sbjct: 6   KTLDILKNDHNFREIIFH-NHYSLDWKENPSFSQISFDSREADKSTLFFA-KGATFK-KE 62

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116
           ++ QAI  G    V    Y L         + P ++V + +K +SL A   YG       
Sbjct: 63  YLEQAIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLK 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
           I+A TGT GK++ A F   I ++S   +      +T+       ++LTTP  + L K ++
Sbjct: 114 IIAFTGTKGKTTAAYFAYNILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+TH+ +E SS      R+ G+    G+F N+  DHI    H T + YF  K  L
Sbjct: 174 TAVQNGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLL 233

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                      ++ A   Y   V ++  N             F        I N +    
Sbjct: 234 MAN----SKAVVVNAGMDYFNVVAQQVANTPH---------DFYGKDSDNTIENGRAFDF 280

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V GK    +   L G F   NA+ A   C+ +G   A + + + +   VPGR E V T 
Sbjct: 281 DVTGKLAGHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRME-VITQ 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD- 411
           + G +++VDYAH  +SLE +L  +     G + ++ G  G++ + +R    ++     + 
Sbjct: 339 TNGAKVFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNL 398

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGH 469
             I+T D+P  EDP+ I  EI   +   ++   +R +AI  A+   N + D +++AGKG 
Sbjct: 399 HVILTADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGA 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +   IV       + D +I +  L 
Sbjct: 459 DAYQIVNGERTAYAGDLNIAKSYLN 483


>gi|58697149|ref|ZP_00372575.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536545|gb|EAL59906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
          Length = 423

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 154/446 (34%), Positives = 245/446 (54%), Gaps = 27/446 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L++          +I  + + + +I  V+ + + I+ G++FV +   + D  ++I
Sbjct: 1   MKLRELLH----------NIIDVNF-DIEIKGVTCNPKKIKEGYLFVCVS-ER-D-RIYI 46

Query: 61  PQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENI 117
            Q ++ GA+AI+ S     +L       R     +   N ++  S   SR Y  K P+ +
Sbjct: 47  DQILSCGAKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYV 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AVTGT+GK+SV  F +QI Q SG ++  IG   T  +  +     + +        + L
Sbjct: 107 AAVTGTNGKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V H+ +E+SSHG+DQ+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF E+
Sbjct: 167 RGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEV 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP+   AI+ AD      ++K A     +V++ G +G  I L +  +  N Q +T+ ++ 
Sbjct: 227 LPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDN 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + ++  FP+ G+FQ YN L A G+    G++   +   +EKL   PGR E V        
Sbjct: 287 QIYNTFFPVLGKFQAYNLLCAIGIS---GLNYREIC--VEKLVSPPGRMEKVK-----PF 336

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +VDYAHT ++L+  L +++   + +II+VFGCGG+RDQ KR  MGKIA   AD  I+TD
Sbjct: 337 AFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITD 396

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKG 443
           DN R EDP KIR +I+   P  +E G
Sbjct: 397 DNSRDEDPAKIRHDILLHCPDALEIG 422


>gi|146318305|ref|YP_001198017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 05ZYH33]
 gi|146320499|ref|YP_001200210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 98HAH33]
 gi|253751469|ref|YP_003024610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|253753370|ref|YP_003026511.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|253755801|ref|YP_003028941.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|166224789|sp|A4W0C1|MURE_STRS2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224791|sp|A4VU28|MURE_STRSY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145689111|gb|ABP89617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           05ZYH33]
 gi|145691305|gb|ABP91810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           98HAH33]
 gi|251815758|emb|CAZ51359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|251818265|emb|CAZ56074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|251819616|emb|CAR45345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|319757886|gb|ADV69828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis JS14]
          Length = 481

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 120/488 (24%), Positives = 207/488 (42%), Gaps = 35/488 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q       W + + + +S DSR +    +F A  G       F+ +AI  G    V  
Sbjct: 20  IKQNDQTDSTWTDVQFDALSYDSRTVSPMTLFFA-KGLAFK-KEFLEKAIEAGLAFYVSE 77

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
             Y +           P ++V + ++ +SL A   +G   +   +LA TGT GK++ A F
Sbjct: 78  INYEV---------GIPAIIVHDIKQAMSLIAMEFHGHPQKQLKLLAFTGTKGKTTAAYF 128

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
              I ++S   +      +T+       + LTTP  + L   ++     G+TH+ +E SS
Sbjct: 129 AFNILKQSKKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKNGMTHLIMEVSS 188

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 R+ G+    G F N+  DHI    H T + YF  K  L +         I+ A 
Sbjct: 189 QAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMDN----SRAVIVNAG 244

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPG 308
             + + V ++  +             F        I        +  GK    +   L G
Sbjct: 245 MDHFEVVKEQVSSK---------DHDFYGPTSENQISQSAGFDFTATGKLAGHYDIQLIG 295

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F   NA+ A   C+ +G     +   + +   VPGR E V T   G +++VDYAH  +S
Sbjct: 296 GFNQENAIAAGLACLRLGASLEDIHTGIAQ-TNVPGRME-VLTQQNGAKVFVDYAHNGDS 353

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEK 427
           ++ ++  +    +G++ ++ G  G++ + +R   G +  D   I  I+T D+P  EDP  
Sbjct: 354 VKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADDPNREDPAA 413

Query: 428 IRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  +I   +        +R EAIRTA+    + +D +++AGKG +   IV   +     D
Sbjct: 414 IAEQIRAHMTRTSNFILDREEAIRTAMSQTSSPKDAVIIAGKGADAYQIVNGEKAAYDGD 473

Query: 486 CDIIREIL 493
            ++ ++ L
Sbjct: 474 LEVAKQYL 481


>gi|145630233|ref|ZP_01786015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984514|gb|EDJ91937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 358

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 115/361 (31%), Positives = 178/361 (49%), Gaps = 11/361 (3%)

Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G  +  +G     +     + + TT S + +  +LS     G    S+E SSHGL QHR
Sbjct: 1   MGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHR 60

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD    + + 
Sbjct: 61  VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDEIGYQWLT 118

Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              +A    ++  ++    +++    +        +T      +     PL G F V N 
Sbjct: 119 ELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNL 178

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++LE  L  
Sbjct: 179 LLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPI-VIVDYAHTPDALEKALIA 237

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I A+I+ G
Sbjct: 238 AREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAG 297

Query: 436 IPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D +I  + 
Sbjct: 298 FKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSDQEIALDF 356

Query: 493 L 493
           L
Sbjct: 357 L 357


>gi|15903427|ref|NP_358977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae R6]
 gi|116516282|ref|YP_816820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|149021803|ref|ZP_01835810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|46577039|sp|Q8CWQ5|MURE_STRR6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122278334|sp|Q04JL8|MURE_STRP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15459034|gb|AAL00188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine Ligase
           [Streptococcus pneumoniae R6]
 gi|116076858|gb|ABJ54578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|147930039|gb|EDK81026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|301794540|emb|CBW36983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV104]
 gi|332074284|gb|EGI84761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 481

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 135/501 (26%), Positives = 220/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|332522134|ref|ZP_08398386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313398|gb|EGJ26383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 485

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/500 (25%), Positives = 223/500 (44%), Gaps = 38/500 (7%)

Query: 5   DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           DL+   K+F E+I + S +   +     +++S DSR      +F  + G    G  ++  
Sbjct: 9   DLLKGDKNFREVIAEDSYY-YHYTGLNFSKLSYDSRDADNQTLFF-VKGANFKG-EYLQS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+ QG +A +    Y +           P ++V++ +  +S+ A   Y    + +  LA 
Sbjct: 66  ALNQGLQAYISEVDYEV---------GIPAIIVNDIKHAMSIIAMAFYDNPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S  ++      +T+       ++LTTP  + L K ++   S
Sbjct: 117 TGTKGKTTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFKSQLTTPESLDLFKMMAECVS 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G F N+  DHI    H   + YF  K      L
Sbjct: 177 NGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPNFEDYFYHK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + S A+I   D     ++K                 F       +I + Q  T    G
Sbjct: 232 LMENSRAVIINSDMDHFHILKEQVAKQ--------DHDFYGQASDNSITDSQAFTFKATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   ++   L G F   NA+ A   C+ +G     + + + +   VPGR E +     G 
Sbjct: 284 KLAGNYRTLLIGRFNQENAIAAGLACLRLGASHEDIQKGIAQ-TTVPGRMEVLNHPC-GA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE ++  +     G+I ++ G  G++ + +R    K+  +  ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLVSVVEEHQKGQITLIIGSTGNKGESRRADFAKVINNHPNLSVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDP+ I  EI   +   +     R +AI+  ++    ++D L++AGKG +   
Sbjct: 402 TADDPNFEDPQTISEEIASYVSRQLTIEVEREQAIKLGLQSCQEEEDALIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  I +  +
Sbjct: 462 IVNGQKTDYAGDYTIAKAFI 481


>gi|145635584|ref|ZP_01791282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|145267146|gb|EDK07152.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 358

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/361 (31%), Positives = 178/361 (49%), Gaps = 11/361 (3%)

Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G  +  +G     +     + + TT S + +  +LS     G    S+E SSHGL QHR
Sbjct: 1   MGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHR 60

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL       +I ADD    + + 
Sbjct: 61  VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDEIGYQWLT 118

Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              +A    ++  ++    +++    +        +T      +     PL G F V N 
Sbjct: 119 ELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNL 178

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++LE  L  
Sbjct: 179 LLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNK-PTVIVDYAHTPDALEKALIA 237

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I A+I+ G
Sbjct: 238 AREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAETIIVTKDNPRTEPQSQIEADIVAG 297

Query: 436 IPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                +     +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D +I  + 
Sbjct: 298 FKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSDQEIALDF 356

Query: 493 L 493
           L
Sbjct: 357 L 357


>gi|225857155|ref|YP_002738666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae P1031]
 gi|225724415|gb|ACO20267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae P1031]
          Length = 481

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 135/501 (26%), Positives = 220/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHSSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|227875251|ref|ZP_03993393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269978140|ref|ZP_06185090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|306818513|ref|ZP_07452236.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|227844156|gb|EEJ54323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269933649|gb|EEZ90233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|304648686|gb|EFM45988.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 516

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 135/511 (26%), Positives = 231/511 (45%), Gaps = 32/511 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ L + D   + + +          ++     D+R ++ G +F+A+ G    G  F P 
Sbjct: 14  LQALAWVDTAAIADAVG-GTRHGPAGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPD 72

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120
           AI++GA+A++  +A              P++ V +        A+  +G       +  V
Sbjct: 73  AISRGAKAVLTDAAG----LDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++    ++ +  R G  +  +G     I   +  + +TTP    +    +   +
Sbjct: 129 TGTNGKTTTTYLLRHLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVA 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  + +E SSH L   R+D ++     F NL  DH+D+H + + YF  K  LF E   
Sbjct: 189 AHLEDLVLEVSSHALGLGRVDPLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFTER-- 246

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +    +I  DD + + + ++    G        + G+   +                 + 
Sbjct: 247 RSDRQVIIVDDDWGRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAF 306

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL---EHLEKLHV------VPGRF 346
           +GK       +PG F   N  +A  + +  G+  +  +   + L  L        VPGR 
Sbjct: 307 DGKTASVQVLMPGRFNAVNTALAI-VMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRM 365

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +   +   R+ VD+AH   +L+ +L+ +R  T+GR+ +VFG  G RD  KRPI+G+IA
Sbjct: 366 ELI---ANQPRVIVDFAHNPGALKSLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIA 422

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
            +LAD   +TDD+P  EDP KIRAE+  G+      ++E   R  AI+ AI+    QD +
Sbjct: 423 GELADFTYLTDDDPHEEDPGKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQDAKPQDTV 482

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V+AG+GHET+     G   +  D    R  L
Sbjct: 483 VIAGRGHETLQETPVGAIDL-DDRVEARAAL 512


>gi|332199575|gb|EGJ13650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 481

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 131/501 (26%), Positives = 221/501 (44%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K  L E 
Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLMEN 235

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   II +D  +   + ++  +         +  +         I N +  + S  
Sbjct: 236 ----SRAVIINSDMDHFSVLREQVEDQDHDFYGSQFDNQ---------IENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI + I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|332298508|ref|YP_004440430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
 gi|332181611|gb|AEE17299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
          Length = 557

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 148/533 (27%), Positives = 220/533 (41%), Gaps = 59/533 (11%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L+            +  I ++  DSR ++AG +F A+ G    G+ FI +AIA+G
Sbjct: 3   KRLSQLLTGFQHETAGGSSDPIITDICFDSRAVRAGSLFFALPGTHVHGNAFIAKAIARG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNT----PILV-VDNTRKFLSLFASRLYGKHPENI--LAV 120
           A AIV           A    N     P+LV V + R  +S  A   Y    E +  + V
Sbjct: 63  AAAIVYQDDLPEDALRAAEERNNEAEAPVLVRVRDARFAMSPAADAFYDSPSEKLAVIGV 122

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GKSS  SF+ Q+    G  +  I          + A     TTP    + + L  +
Sbjct: 123 TGTEGKSSTVSFIWQLLGLCGKKAGFISTVQYSLGDDAIANPEHQTTPEAPIVQRQLYEM 182

Query: 178 SSQGVTHVSVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              G  +  VE+SSHGL +  +RL  ++  AG F N+  +H+++H T + Y + K  LF 
Sbjct: 183 VQNGCEYAVVESSSHGLSRKTNRLGDVRFDAGVFMNVTHEHLEFHGTHEQYKSDKANLFR 242

Query: 236 ELLPKE-------------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---- 278
            L   +             +  ++  +D  +               + G  GK       
Sbjct: 243 ALDAHDHLKTIGGTRRRVPAFGVVNLEDPAAAYFNDATEKTVYGFTTGGAAGKNADIPLP 302

Query: 279 ----------LKKVCAIHNKQQVTISVEGKD---------FDFLFPLPGEFQVYNALVA- 318
                       +V A  +    T +V   D              PLPG F VYN L + 
Sbjct: 303 EIPAEIPRFSADRVAAKSDGIAFTANVPPSDTIRATAPDPVAVTAPLPGAFNVYNVLASL 362

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +    GI  A V E   +L  V GR   +    +   + VDYAHT +S E I   +R 
Sbjct: 363 ITVSTITGIPFARVAEKCPQLQPVKGRMTVID-KGQPFEVIVDYAHTPSSFETIFPPLRK 421

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
               RIIV+FG GG+RD  KRP  G+IA    D+ I+ D++PR+EDP  +   I  G   
Sbjct: 422 RARNRIIVLFGSGGERDTKKRPEQGRIAARWCDVVILADEDPRAEDPAALLEMIAAGCRS 481

Query: 438 -------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
                  G      R +AIR A  +  + D++++ GK HE   I  +      
Sbjct: 482 AGKTEGNGLYVVPPRPQAIRKAFALAAEGDIVLLLGKAHENSIIYKDYTMPYD 534


>gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
 gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
          Length = 495

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 142/499 (28%), Positives = 235/499 (47%), Gaps = 28/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +L+ +      N L   P    + +I  +S  S  +  G +FVAI G   DG  +I
Sbjct: 3   MKVYELLEQSGVTARNPL---PADVEQLEITGISESSLQVTNGHLFVAISGYATDGEAYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA  IV  S         T R N P + VDN R+ LSL  S  Y    ++  ++
Sbjct: 60  GNAIERGASLIVTESDL-------TARENVPFIQVDNARERLSLLVSAFYHNPSQDKLVI 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A F+Q + +++G      G     I+    +++LTTPS   +  +L++ 
Sbjct: 113 GITGTNGKTTTALFLQHLLKKAGFEVAYFGTVYNEITCQRYESKLTTPSATEIQASLAWS 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +      V +E SS GL Q+R+ G++     FTNL  DH+DY++T +AY+ AK  LF  L
Sbjct: 173 ND---DVVVIETSSQGLHQYRMAGMQFDYALFTNLQHDHLDYYKTMEAYYQAKKSLFS-L 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  +  A+I +   +   + K     G +VL+V  +                       G
Sbjct: 229 MKADGKAVINSYTMWGNRLAKELAANGKQVLTVDTKKGATSYVLDKTTDTAVVAFNGQGG 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  +   PL G +   N ++A  + + +G+D+    E +     + GR E+    + G  
Sbjct: 289 QIEEIEAPLSGVYNQENLILATTVMVDLGLDAGNTNEAIADFAGIAGRLEYYPL-ADGNE 347

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDYAHT +++E +L  +     +  II +FG  G RD  K P M   +   AD+ I+T
Sbjct: 348 MVVDYAHTPDAIEALLTTLNAQYPNHEIIHIFGFRGQRDTKKFPQMVSASQTGADLTILT 407

Query: 417 DDNPRSEDPEKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            D+     P+++ AE        +G+       +R+EA+  A+EM      LV+ GKGHE
Sbjct: 408 TDDLNGV-PKQVMAEKYLEYVTQYGLDSMAMALDRVEAVELALEMSPNPVFLVLTGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDII 489
               V   +  +  D  + 
Sbjct: 467 AYSEVN--KYGVQSDQQVA 483


>gi|149003251|ref|ZP_01828147.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|169832669|ref|YP_001694935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|237650212|ref|ZP_04524464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237820905|ref|ZP_04596750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758711|gb|EDK65708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|168995171|gb|ACA35783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 481

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 219/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|300741260|ref|ZP_07071281.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
 gi|300380445|gb|EFJ77007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
          Length = 572

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 147/519 (28%), Positives = 243/519 (46%), Gaps = 45/519 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +    +   Q  E  +  +S DSR ++   ++VA+ G K  G  F  +A+   A AI+
Sbjct: 42  EALGAHPVLEHQGSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101

Query: 73  VSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSS 128
             +A +     A +      +LV D+ R  +   A+ +YG      L   AVTGT+GK++
Sbjct: 102 TDTAGARMIREANLSLDGCSLLVCDSLRPVIGSLAALIYGSQDHKNLNRYAVTGTNGKTT 161

Query: 129 VASFVQQICQRS-GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
               ++ + + +    +  IG     +   +  + LTTP  +++   L+ +  +GV+H +
Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIMGERGVSHAA 221

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH +D HR+DG+      FTNL +DH+D H T Q YF++K +LF     +   A+I
Sbjct: 222 MEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTP--ERTECAVI 279

Query: 247 YADDAYSKEVMKRAH------NAGCRVLSVG---------YQGKFIHLKKVCAIHNKQQV 291
            ADD + +++++ A       NA   V   G         +      +  V       + 
Sbjct: 280 TADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVERDGLGHRF 339

Query: 292 TI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL-------EHLEKLHVVP 343
           T+ +  G        LP +F V NA +A  L + IG      +       +      +VP
Sbjct: 340 TLANGAGDTIPCCTHLPADFNVSNAALA-ALMVYIGASEEERIILRPALADGTALTPIVP 398

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR + +          VD+AH  + L   L+ +     GR+I+VFG  G+RD  KRP+MG
Sbjct: 399 GRMQLISLAPH---TIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDHLKRPLMG 455

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----------AIRTAI 453
           +IA   ADI IVTDD+P  EDP  IR  ++ G      +G R            AI  AI
Sbjct: 456 EIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPREVAIARAI 515

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           E+ + +D +++AG+GHET   V   + ++    +  + +
Sbjct: 516 ELADARDAILIAGRGHETAQDVAGTDVQLDDRVETAKAL 554


>gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 511

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 130/515 (25%), Positives = 218/515 (42%), Gaps = 32/515 (6%)

Query: 1   MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52
           M L ++I        F ELI         P +   R + ++S DSR ++ G +F    G 
Sbjct: 3   MTLSEIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K D   ++  A  QGA   +  + YS Q    +   + P ++V + +K ++  +   +G 
Sbjct: 62  KFD-PKYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGF 119

Query: 113 HPENI--LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPT--STISSFAQDNRLTTPSP 167
              N+  +  TGT GK++   F + +  ++ G    Q+                LTTP  
Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           + L + +       + ++ +E SS    + R+ G+ L  G F N+  DHI    H + + 
Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFED 239

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y   K  + +         ++  + +    + ++AH+ G +V+S G        +     
Sbjct: 240 YLACKSEIIDNC----RILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGE 295

Query: 286 HNKQQVTIS---VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           H    VT +   +   D DF   +PG+F V NAL A  +   +   S      L +   V
Sbjct: 296 HGYFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAE-TTV 354

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR EF+  + +G    VDYAH   SL      ++     GR+IVV G  G + + +R  
Sbjct: 355 PGRMEFIK-DKQGVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKD 413

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           +G+     AD+AI+T ++   EDP +I A+I   I       I   +R  AI  A  M  
Sbjct: 414 IGRALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAK 473

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             D L +A KG ET       +     D  I +++
Sbjct: 474 PGDALFMAAKGRETFMHEKGKDVPYQGDYQITKQL 508


>gi|227497585|ref|ZP_03927808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
 gi|226832954|gb|EEH65337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
          Length = 549

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 158/517 (30%), Positives = 250/517 (48%), Gaps = 36/517 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL +      +           +  I+ VS DS  +  G +FVA+ G +  G  F  Q
Sbjct: 22  LADLAHTL---SLEAAGDPAADLGQVLIHGVSVDSGDVAPGELFVALPGFRRHGAEFAAQ 78

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA A++  +  + +  ++      P+L   + R  +   A+ +Y  HP   L  T 
Sbjct: 79  AVAGGAVAVLTDADGATRLGASL--GQVPVLTHPDPRAVVGPLAAEVY-HHPATHLTTTA 135

Query: 123 TSGKSSVA---SFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +G +       F+Q I     G          ++ + + ++  TT     L + ++   
Sbjct: 136 VTGTNGKTTTTYFLQSILAAHLGQCMIAGTVELSVGTQSVESPRTTVEAPVLQRMMALAV 195

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GV   S+EASSH +  HRL G  +    FTNL RDH+D+H T + Y  AK RLF    
Sbjct: 196 EEGVKAASLEASSHAIVLHRLGGTVVDVAGFTNLQRDHLDFHHTMEEYLEAKARLFTP-- 253

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQ-------GKFIHLKKVCAIHN 287
                A+I  DD +   + +R  + G     RV +   Q       G    + +V A   
Sbjct: 254 EHARRAVICVDDRWGAALAERVADRGAVPVDRVRAYPAQDSEDPAQGAQWWVSQVKASMT 313

Query: 288 KQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +   T ++   +G+  + L PLPG   V NA +A  + +  G+     ++ L   H +PG
Sbjct: 314 QAATTFTLHGPDGEQIEALCPLPGLVNVQNAALALVMALRAGVAQDTAVQALAHAHNIPG 373

Query: 345 RFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           R + +     R G   VD+AHT  ++++ LK +R IT GR+IVVFG  GDRDQGKRP++G
Sbjct: 374 RMQRISQRDGRRGTCIVDFAHTPEAMDLALKAVREITPGRLIVVFGSDGDRDQGKRPLLG 433

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGN----RIEAIRTAIEM 455
           ++A  LAD+ +VTD+NPRSEDP+ IR  ++ G+    PG  +       R +A+R  +E+
Sbjct: 434 QVAARLADVLVVTDENPRSEDPQLIRDAVLAGVRSVRPGLEDVEEITTWRGDAVRRGVEL 493

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              QD ++V GKGHE    +     +   D  ++RE 
Sbjct: 494 CGPQDTVIVTGKGHEPFLEMAGEFIRY-NDAPVMREA 529


>gi|194396806|ref|YP_002038162.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae G54]
 gi|194356473|gb|ACF54921.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus pneumoniae
           G54]
          Length = 481

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 219/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
 gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
          Length = 487

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 132/493 (26%), Positives = 210/493 (42%), Gaps = 30/493 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  L        +  I +   +S  +Q   +F+   G   D H ++ QAI  GA A++ +
Sbjct: 3   IQALKRSAAVLEQLPIRQFVINSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIAN 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFV 133
                     T+  + P++V ++  + L++  A   +     N + VTGT+GK++VA  +
Sbjct: 63  R---------TLHLDIPVIVTESHYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCL 113

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q+  +S  +S  IG      +        TTP  + L      +   GV H  +E SSH
Sbjct: 114 NQMLNQS-STSAYIGTLGVQYADVIMALSNTTPDGVTLLNIFRDMVECGVKHNVMELSSH 172

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L Q R   + L  G  TN+GRDH+DYH+T+ AY  AK+++ + + P    A+I  DD +
Sbjct: 173 ALAQDRAGFLDLEVGIITNIGRDHLDYHRTKDAYVQAKLQIIDRIKP-GGYAVINMDDPH 231

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIH-------LKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +  R H    + +S     K  H        K++ +       ++   GK       
Sbjct: 232 APAMFARCHGR-VKTVSFSIHYKDTHNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQ 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +P  F V N L  A    A G     +   L  +    GR +F   N  G    VDYAH 
Sbjct: 291 MPFLFNVENMLAMACALHAQGWTLDQIASGLTTIIPPDGRAQFQTLN-NGATGLVDYAHN 349

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L  +  +I   T    + V G  GDR Q    I G++    +D+ + T DNP   D 
Sbjct: 350 LDGLARLFSDIPNQTFRHTLTVVGVTGDRIQDAAAI-GELCARYSDLVVFTMDNPLGIDQ 408

Query: 426 EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV---TNG 478
             I   +   I           +R EAI  A +M  K D++VV GKG ET  ++     G
Sbjct: 409 ADIFRALTSRIESVSTPVFTIADRSEAISLAKQMSQKGDLIVVCGKGSETSQLISVNKQG 468

Query: 479 EKKMSVDCDIIRE 491
            +    D  ++ +
Sbjct: 469 LQDYIGDMPVLMQ 481


>gi|330832625|ref|YP_004401450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
 gi|329306848|gb|AEB81264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
          Length = 481

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 119/488 (24%), Positives = 208/488 (42%), Gaps = 35/488 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q       W + + + +S DSR +    +F A  G       F+ +AI  G    V  
Sbjct: 20  IKQNDQTDSTWTDVQFDALSYDSRTVSPTTLFFA-KGLAFK-KEFLEKAIEAGLAFYVSE 77

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
             Y +         + P ++V + ++ +SL A   +G   +   +LA TGT GK++ A F
Sbjct: 78  IDYEV---------DIPAIIVHDIKQAMSLIAMEFHGHPQKQLKLLAFTGTKGKTTAAYF 128

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
              I ++S   +      +T+       + LTTP  + L   ++     G++H+ +E SS
Sbjct: 129 AFNILKQSHKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKNGMSHLIMEVSS 188

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 R+ G+    G F N+  DHI    H T + YF  K  L +         I+ A 
Sbjct: 189 QAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMDN----SRAVIVNAG 244

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPG 308
             + + V ++  +             F        I        +  GK    +   L G
Sbjct: 245 MDHFEVVKEQVSSK---------DHDFYGPTSENQISQSAGFDFTATGKLAGHYDIQLIG 295

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F   NA+ A   C+ +G     +   + +   VPGR E V T   G +++VDYAH  +S
Sbjct: 296 GFNQENAIAAGLACLRLGASLEDIHTGIAQ-TNVPGRME-VLTQQNGAKVFVDYAHNGDS 353

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEK 427
           ++ ++  +    +G++ ++ G  G++ + +R   G +  D   I  I+T D+P  EDP  
Sbjct: 354 VKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADDPNREDPAA 413

Query: 428 IRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  +I   +        +R EAIRTA+   +  +D +++AGKG +   IV   +     D
Sbjct: 414 IAEQIRAHMTRPSNFILDREEAIRTAMSQTSSTKDAVIIAGKGADAYQIVNGEKAAYDGD 473

Query: 486 CDIIREIL 493
            ++ ++ L
Sbjct: 474 LEVAKQYL 481


>gi|157164782|ref|YP_001467685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter concisus 13826]
 gi|112800816|gb|EAT98160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter
           concisus 13826]
          Length = 427

 Score =  283 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 200/467 (42%), Gaps = 57/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DS   + G  FV           F+  A   GA+ I +     L      +      
Sbjct: 10  ITDDSNECEQGAYFV----QTTANAKFVEHAAKNGAKIITLEECKKLLKIDENL------ 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                                   I+ +TGT+GK++ A+ + +  +  G      G    
Sbjct: 60  -----------------------KIVGITGTNGKTTTAAAIYETLRNLGKKCGLSGTRGA 96

Query: 153 -ISSFAQDNRLTTPSPIYLA-KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            I     D++  T S I      L   S QG  +  +E SSH + Q R++ +      FT
Sbjct: 97  FIEGEQIDDKALTTSAILKTLSYLKAASEQGCEYFVMEVSSHAIAQKRIESLNFALKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYH++ + Y   K   F++    ES  +I  DD   K   K A        + 
Sbjct: 157 NLTQDHLDYHKSMEEYARVKSSFFDD----ESVKLINIDDGGVKFNPKNA-------YTY 205

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDS 329
             +        V  + +     I     D +    L GEF +YN + A   +C+    D+
Sbjct: 206 AIKKPASFAPIVYGLKDGIDAVIKTPNGDVEIDSSLQGEFNLYNLIAALGAVCLLERPDA 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A + + + K   V GR E V T+     + VD+AHT + +E +L ++R +    +I VFG
Sbjct: 266 AALSKAISKFKGVSGRMEVVSTD---PLVIVDFAHTPDGIEKVLNSLRHL---NLIAVFG 319

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRI 446
            GGDRD+ KRP MG IA   A I IVT DNPRSE+PE I  EI  G+      I   NR 
Sbjct: 320 AGGDRDRTKRPKMGAIAQKYARICIVTSDNPRSEEPESIIDEICAGMSQNENLIRNANRK 379

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI  AI  L     LV+ GKG E    +  G K    D +++ E+L
Sbjct: 380 EAIALAISKLEPGWALVILGKGDEPYQEIK-GVKHPFSDKEVVIELL 425


>gi|300933359|ref|ZP_07148615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium resistens DSM 45100]
          Length = 552

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 152/520 (29%), Positives = 227/520 (43%), Gaps = 64/520 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++   +  S  ++AG +F A+ G K  G  F   +    A A++   A   +D      
Sbjct: 22  VEVTSAAIGSTDVRAGGLFCAVPGLKTHGAQFAGTSQ---ATAVLTDPAG--EDILEAQG 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--GLSSF 145
              P L+VD+ R+++   A+ +YG HP   L+V G +G S   +    + +      S  
Sbjct: 77  VELPRLIVDDVREWMGPVAAEIYG-HPSRRLSVIGITGTSGKTTTSYLVEKALLPNHSVG 135

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG T T I+      +LTTP    +   L+ +  +GVTHV +E SSH L+  R+ GI  
Sbjct: 136 IIGTTGTRINGRPVPTKLTTPEAPTMQSLLAEMVDEGVTHVVMEVSSHALELGRVHGIDF 195

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-----PAIIYADDAYSKEVMKR 259
              +FTNL +DH+D+H T + YF AK +LF E   ++       A+I  DD + + + + 
Sbjct: 196 DVAAFTNLSQDHLDFHPTMEDYFQAKAKLFREQAGEKHDVKLPAAVICVDDEWGQRMAQL 255

Query: 260 AHNAGCR----------VLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKD------ 299
           A                V + G             +       + V ++  G+       
Sbjct: 256 ASQRQGDAGGAVAPVLAVRTAGTHDSTDAAVAGAYENIPTWVLESVQVTPSGRQEIRFHT 315

Query: 300 -----------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                       ++   L G F V N+ VA      +G D     +HL  +  VPGR + 
Sbjct: 316 GATHAPDAREPLEYSIGLAGSFNVANSAVALACVAQLGEDVEAAAQHLRDVQ-VPGRMQA 374

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKI 405
           V    +     VDYAH   ++  +++ +        GRI +V G GG+RDQ KRP MG  
Sbjct: 375 VD-EGQDFLAMVDYAHKPGAVAAVVRTLADYLPTKEGRIGIVIGAGGNRDQDKRPKMGYE 433

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIE------------KGNRIEAIRTA 452
           A  +AD   VTDDNPR EDP  IR  I  G   GF E              +R EAI  A
Sbjct: 434 AALVADAVFVTDDNPRDEDPAPIREAIYSGAEAGFAERGVEKKTVTLANIADRAEAITAA 493

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           ++     D +VVAGKGHET  +V  G      D + +R  
Sbjct: 494 VQWAQPGDAIVVAGKGHETGQLVA-GVMHEFDDVEQLRAA 532


>gi|227891687|ref|ZP_04009492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866490|gb|EEJ73911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 510

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 136/513 (26%), Positives = 221/513 (43%), Gaps = 51/513 (9%)

Query: 14  LINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           L+++  +      E+K+    V+ DSR +    +F    GN +    ++  A+ +GA A 
Sbjct: 11  LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC-KGNFKP--SYLTSALEKGATAY 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128
           V    Y+          +   ++V N +K ++L  +  YG  P+N   I+A TGT GK++
Sbjct: 68  VSEQKYAE-------GMDATGIIVTNVQKAMALLGAAFYG-FPQNELFIIAYTGTKGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            A F + I  ++      +  T              + LTTP  + L   +    + G+T
Sbjct: 120 SAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMT 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS    ++R+ G+    G F N+  DHI    H T   Y + K    E+LL   
Sbjct: 180 HLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNS 235

Query: 242 SPAIIYADDAYSKEVM-----------------KRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              +I  + AY ++V                  K A  +    + + YQ  F  L K   
Sbjct: 236 KCCVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVI 295

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                         D  +   +PG++   NA  A    +  G       + L+++H +PG
Sbjct: 296 EVKGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVH-IPG 354

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG 403
           R E + T + G  IYVDYAH   SL+ +   ++  T  GR+I V G  GD+   +RP  G
Sbjct: 355 RMEIIKTKNNG-TIYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFG 413

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQ 459
           K   +  D  I+T D+P  EDP KI  EI   I     K     +R  AI  AI+M    
Sbjct: 414 KAVSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNN 473

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D++V+AGKG +    +   +     D ++ ++I
Sbjct: 474 DIVVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506


>gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 516

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 129/499 (25%), Positives = 222/499 (44%), Gaps = 31/499 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + Q     +     ++     D+R ++ G +FVA+ G    G  F   A ++GA A++  
Sbjct: 25  LAQAVGGTVHGDGGRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSD 84

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SF 132
            A      +     + P ++V +        A+  + +  + + A   T           
Sbjct: 85  PAG----MAFLTDLDIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYL 140

Query: 133 VQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           ++ +  R G  S  +G   + +        +TTP    L    +    + V H+ VE SS
Sbjct: 141 LRHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSS 200

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L   R+D +      FTNL +DH+DYH T + YF  K  LF +   +    +I  D  
Sbjct: 201 HALAMGRVDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQ--QRSDRQVIIVDGV 258

Query: 252 YSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLP 307
           + + + ++   +G      LS+  +      K +       ++ +   +GK+      +P
Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMP 318

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVL---EHLEKLHV------VPGRFEFVGTNSRGGRI 358
           G F   NA +A  + +  G+  +      + L  L V      VPGR E +    R   +
Sbjct: 319 GTFNAINAALAI-VMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPR---V 374

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+AH  +S +++L  +R  T GR+++V G  G RD GKRPI+G+IA +LAD   VTD 
Sbjct: 375 IVDFAHNPDSTKVLLDTMRISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDG 434

Query: 419 NPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +   E+P  IR +++ G+ G+    +E   R  AI  AI     +D +V+ G+GHE++  
Sbjct: 435 DIHEEEPSGIRRDVMAGMKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMF 494

Query: 475 VTNGEKKMSVDCDIIREIL 493
              G+  +  D  + RE L
Sbjct: 495 TPEGQYDL-DDRVVAREAL 512


>gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
 gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
          Length = 516

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 129/499 (25%), Positives = 222/499 (44%), Gaps = 31/499 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + Q     +     ++     D+R ++ G +FVA+ G    G  F   A ++GA A++  
Sbjct: 25  LAQAVGGTVHGDGGRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSD 84

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SF 132
            A      +     + P ++V +        A+  + +  + + A   T           
Sbjct: 85  PAG----MAFLTDLDIPAIIVPDVASVAGQAAAIAFNQPCQQLSAWGVTGTNGKTTTTYL 140

Query: 133 VQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           ++ +  R G  S  +G   + +        +TTP    L    +    + V H+ VE SS
Sbjct: 141 LRHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSS 200

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L   R+D +      FTNL +DH+DYH T + YF  K  LF +   +    +I  D  
Sbjct: 201 HALAMGRVDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQ--QRSDRQVIIVDGV 258

Query: 252 YSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLP 307
           + + + ++   +G      LS+  +      K +       ++ +   +GK+      +P
Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGYTELRLRAFDGKEASVQVRMP 318

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVL---EHLEKLHV------VPGRFEFVGTNSRGGRI 358
           G F   NA +A  + +  G+  +      + L  L V      VPGR E +    R   +
Sbjct: 319 GTFNAINAALAI-VMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPR---V 374

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+AH  +S +++L  +R  T GR+++V G  G RD GKRPI+G+IA +LAD   VTD 
Sbjct: 375 IVDFAHNPDSTKVLLDTMRISTKGRLLLVMGADGQRDSGKRPILGQIAAELADFTYVTDG 434

Query: 419 NPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +   E+P  IR +++ G+ G+    +E   R  AI  AI     +D +V+ G+GHE++  
Sbjct: 435 DIHEEEPSGIRRDVMAGMKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMF 494

Query: 475 VTNGEKKMSVDCDIIREIL 493
              G+  +  D  + RE L
Sbjct: 495 TPEGQYDL-DDRVVAREAL 512


>gi|168491578|ref|ZP_02715721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574296|gb|EDT94824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
          Length = 481

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 219/501 (43%), Gaps = 40/501 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS      R+ G+    G F N+  DHI    H + + YF  K      
Sbjct: 176 QNDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A+I   D     V+K                 F   +    I N +  + S  
Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVE--------DQDHDFYGSQFDNQIENSKAFSFSAT 282

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK   D+   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G
Sbjct: 283 GKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AI 414
            ++++DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   
Sbjct: 341 AKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVF 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETV 472
           +T D+P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +  
Sbjct: 401 LTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGVDCY 460

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   ++    D  +    L
Sbjct: 461 QIIQGKKESYPGDTAVAENYL 481


>gi|300213951|gb|ADJ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus salivarius CECT 5713]
          Length = 510

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 136/513 (26%), Positives = 221/513 (43%), Gaps = 51/513 (9%)

Query: 14  LINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           L+++  +      E+K+    V+ DSR +    +F    GN +    ++  A+ +GA A 
Sbjct: 11  LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC-KGNFKP--SYLTSALEKGATAY 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128
           V    Y+          +   ++V N +K ++L  +  YG  P+N   I+A TGT GK++
Sbjct: 68  VSEQKYAE-------GMDATGIIVTNVQKAMALLGAAFYG-FPQNELFIIAYTGTKGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            A F + I  ++      +  T              + LTTP  + L   +    + G+T
Sbjct: 120 SAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMT 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS    ++R+ G+    G F N+  DHI    H T   Y + K    E+LL   
Sbjct: 180 HLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNS 235

Query: 242 SPAIIYADDAYSKEVM-----------------KRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              +I  + AY ++V                  K A  +    + + YQ  F  L K   
Sbjct: 236 KRCVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVI 295

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                         D  +   +PG++   NA  A    +  G       + L+++H +PG
Sbjct: 296 EVKGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVH-IPG 354

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG 403
           R E + T + G  IYVDYAH   SL+ +   ++  T  GR+I V G  GD+   +RP  G
Sbjct: 355 RMEIIKTKNNG-TIYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFG 413

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQ 459
           K   +  D  I+T D+P  EDP KI  EI   I     K     +R  AI  AI+M    
Sbjct: 414 KAVSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNN 473

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D++V+AGKG +    +   +     D ++ ++I
Sbjct: 474 DIVVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506


>gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 511

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 130/515 (25%), Positives = 217/515 (42%), Gaps = 32/515 (6%)

Query: 1   MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52
           M L  +I        F ELI         P +   R + ++S DSR ++ G +F    G 
Sbjct: 3   MTLSGIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K D   ++  A  QGA   +  + YS Q    +   + P ++V + +K ++  +   +G 
Sbjct: 62  KFD-PKYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGY 119

Query: 113 HPENI--LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPT--STISSFAQDNRLTTPSP 167
              N+  +  TGT GK++   F + +  ++ G    Q+                LTTP  
Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           + L + +       + ++ +E SS    + R+ G+ L  G F N+  DHI    H + + 
Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFED 239

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y   K  + +         ++  + +    + ++AH+ G +V+S G        +     
Sbjct: 240 YLACKSEIIDNC----RILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGE 295

Query: 286 HNKQQVTIS---VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           H    VT +   +   D DF   +PG+F V NAL A  +   +   S      L +   V
Sbjct: 296 HGYFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAE-TTV 354

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR EF+  + +G    VDYAH   SL      ++     GR+IVV G  G + + +R  
Sbjct: 355 PGRMEFIK-DKQGVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKD 413

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           +G+     AD+AI+T ++   EDP +I A+I   I       I   +R  AI  A  M  
Sbjct: 414 IGRALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAK 473

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             D L +A KG ET       +     D  I +++
Sbjct: 474 PGDALFMAAKGRETFMHEKGKDVPYQGDYQITKQL 508


>gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 511

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 130/515 (25%), Positives = 217/515 (42%), Gaps = 32/515 (6%)

Query: 1   MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52
           M L  +I        F ELI         P +   R + ++S DSR ++ G +F    G 
Sbjct: 3   MTLSXIITVLKDXGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K D   ++  A  QGA   +  + YS Q    +   + P ++V + +K ++  +   +G 
Sbjct: 62  KFD-PKYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGF 119

Query: 113 HPENI--LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPT--STISSFAQDNRLTTPSP 167
              N+  +  TGT GK++   F + +  ++ G    Q+                LTTP  
Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           + L + +       + ++ +E SS    + R+ G+ L  G F N+  DHI    H + + 
Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFED 239

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y   K  + +         ++  + +    + ++AH+ G +V+S G        +     
Sbjct: 240 YLACKSEIIDNC----RILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGE 295

Query: 286 HNKQQVTIS---VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           H    VT +   +   D DF   +PG+F V NAL A  +   +   S      L +   V
Sbjct: 296 HGYFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAE-TTV 354

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR EF+  + +G    VDYAH   SL      ++     GR+IVV G  G + + +R  
Sbjct: 355 PGRMEFIK-DKQGVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKD 413

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           +G+     AD+AI+T ++   EDP +I A+I   I       I   +R  AI  A  M  
Sbjct: 414 IGRALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAK 473

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             D L +A KG ET       +     D  I +++
Sbjct: 474 PGDALFMAAKGRETFMHEKGKDVPYQGDYQITKQL 508


>gi|111221625|ref|YP_712419.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
 gi|111149157|emb|CAJ60840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
          Length = 476

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 243/472 (51%), Gaps = 21/472 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-DFSATIRS 88
           +  V+ DSR +  G ++ A+ G    G  F   AIA+GA A++  +  + +   +    +
Sbjct: 2   VRGVTHDSRRVAPGDLYAALPGAHVHGADFAAAAIARGAVAVLTDAEGARRIAAAGGPAA 61

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+LV  + R+ L+  A+R++G       +L VTGT+GK++ A  +    + +G ++  
Sbjct: 62  ALPVLVSADPRRDLAPVAARIHGDPSAGLRLLGVTGTNGKTTTAFLLDAGLRAAGHTTGL 121

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T I+     +  TTP    L   L+ +  +GV   ++E SSH L QHR D +   
Sbjct: 122 IGTVETRIAGDRLASAHTTPEASDLQALLATMVERGVDAATMEVSSHALAQHRADALHFA 181

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+D+H T   YF AK  LF  +  + + A+I   D + + +  R  +A  
Sbjct: 182 GALFTNLSQDHLDFHPTMADYFEAKASLF--VPGRAAAAVIGVGDEWGRRLAARRPDA-- 237

Query: 266 RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCI 323
             ++    G      + V A     ++  +  G +  +   PLPG F + NAL A  L +
Sbjct: 238 --VTFAVDGPADWTARDVTAGPTGSELLAAGPGGERVELSVPLPGVFNIANALGALALLV 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G+D A     +  L  VPGR E V    +     VD+AHT +++  +L  +R +  GR
Sbjct: 296 AVGVDPAAAAAGIGALPGVPGRMERVDA-GQPFLALVDFAHTPDAVTTLLATVRPLVKGR 354

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------ 437
           IIVV GCGGDRD+GKRP+MG  A  LAD+AI+T+DNPRSEDP  I A ++ G+P      
Sbjct: 355 IIVVLGCGGDRDRGKRPLMGAAAATLADLAILTNDNPRSEDPADILAAMLAGVPTAARAA 414

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              + + +R  AI  A+     QD +VVAGKGHE+      G      D  +
Sbjct: 415 GRVLVEPDRAAAIAAAVAAAGPQDAVVVAGKGHESGQE-QAGVVTPFDDRVV 465


>gi|262202914|ref|YP_003274122.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
 gi|262086261|gb|ACY22229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
          Length = 556

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 160/509 (31%), Positives = 248/509 (48%), Gaps = 33/509 (6%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L +        ++  V+  ++ +++G +F A+ G+   G  F   A+A GA AI+   A 
Sbjct: 43  LDLIGGAESATEVTGVTLRAQEVRSGDLFAALPGSTTHGARFAADAVAAGATAILTDPAG 102

Query: 78  SLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQ 134
             +         +   LV    R  L   ++R+YG   +   ++ +TGTSGK++ +  V+
Sbjct: 103 RAELSRVLPPEASVVALVHPEPRTVLGGVSARIYGNPSQRLKLIGITGTSGKTTTSYMVE 162

Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                +G S   IG   T I   AQ + LTTP    L   L+ +  +GV  V +E SSH 
Sbjct: 163 AALLAAGSSVGLIGTVETRIDGVAQPSSLTTPEAPTLQALLAVMLERGVDAVVMEVSSHA 222

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAY 252
           L   R+DG     G+FTNL +DH+D+H T  AYF AK +LF    P  +  ++I  DD +
Sbjct: 223 LALGRVDGSHFALGAFTNLSQDHLDFHPTMAAYFEAKAQLFVPSSPVHAVRSVICVDDEW 282

Query: 253 SKEVMKRAHNA-------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              + + A  A          V + G   ++   + V       +  I+    D + + P
Sbjct: 283 GARMAELARPAARQSARQPVTVSTGGVPAQWHAAESVVDADGTSRTPITGTDGDAELVVP 342

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG + V NAL+A  +    G+D+A  +  +  +  VPGR + V    +     VDYAH 
Sbjct: 343 LPGRYNVANALLAVAVADCAGVDAATAIGAIATVS-VPGRLQRVD-RGQPFLALVDYAHK 400

Query: 366 SNSLEMIL-----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             +++ +L     +      +GR+ +V G GGDRD  KRP+MG+ A   A+  +VTDDNP
Sbjct: 401 PGAVQAVLATLRAQAAARAEAGRVAIVIGAGGDRDTAKRPLMGEAAARGAEFVVVTDDNP 460

Query: 421 RSEDPEKIRAEIIHGIPG------------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           R+EDP  IRAE++ G                 E G R EAI TA+      D +++AGKG
Sbjct: 461 RTEDPAAIRAEVLAGARAVGRADRPAGAEEVREVGGRAEAIATALHWARPGDTVLIAGKG 520

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL-GLI 496
           HET   + NG K    D D++ ++L GL+
Sbjct: 521 HETGQEI-NGVKHPFDDRDVVAQVLDGLV 548


>gi|311113335|ref|YP_003984557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
 gi|310944829|gb|ADP41123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
          Length = 572

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 147/519 (28%), Positives = 242/519 (46%), Gaps = 45/519 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +    +   Q  E  +  +S DSR ++   ++VA+ G K  G  F  +A+   A AI+
Sbjct: 42  EALGAHPVLEHQSSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101

Query: 73  VSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSS 128
             +A       A +  +   +LV D+ R  +   A+ +YG      L   AVTGT+GK++
Sbjct: 102 TDTAGVRMIREANLSLDRCSLLVCDSLRPVIGSLAALIYGSQDYKGLNRYAVTGTNGKTT 161

Query: 129 VASFVQQICQRS-GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
               ++ + + +    +  IG     +   +  + LTTP  +++   L+ +   GV+H +
Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIMGECGVSHAA 221

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH +D HR+DG+      FTNL +DH+D H T Q YF++K +LF     +   A+I
Sbjct: 222 MEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTP--ERTERAVI 279

Query: 247 YADDAYSKEVMKRAH------NAGCRVLSVG---------YQGKFIHLKKVCAIHNKQQV 291
            ADD + +++++ A       NA   V   G         +      +  V       + 
Sbjct: 280 TADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVERDGLGHRF 339

Query: 292 TI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL-------EHLEKLHVVP 343
           T+ +  G        LP +F V NA +A  L + IG      +       +      +VP
Sbjct: 340 TLANGAGDTIPCCTHLPADFNVSNAALA-ALMVYIGASEEERIILRPALADGTALTPIVP 398

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR + +          VD+AH  + L   L+ +     GR+I+VFG  G+RD  KRP+MG
Sbjct: 399 GRMQLISLAPH---TIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDHLKRPLMG 455

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----------AIRTAI 453
           +IA   ADI IVTDD+P  EDP  IR  ++ G      +G R            AI  AI
Sbjct: 456 EIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPREVAIARAI 515

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           E+ + +D +++AG+GHET   V   + ++    +  + +
Sbjct: 516 ELADARDAILIAGRGHETAQDVAGTDVQLDDRVETAKAL 554


>gi|296140347|ref|YP_003647590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028481|gb|ADG79251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
          Length = 522

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 151/484 (31%), Positives = 233/484 (48%), Gaps = 23/484 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E + +  +  ++  + G +F  + G    G  F  +A+A GA A++  SA +     A +
Sbjct: 38  EVRCSGATIRAQDARPGDLFCGVPGTSTHGARFAAEAVAAGAVAVLTDSAGAAVLAEAGV 97

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+ D+ R  L   A+ +YG  P   + + G +G S   +    +    G +   
Sbjct: 98  --DVPVLLHDDPRSVLGPAAAVIYGA-PSTKMTLVGITGTSGKTTTSFLVEAALGATQAT 154

Query: 147 IGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            G   T+ +          LTTP    L    + +  QGVT   +E SSH L Q+R+ G 
Sbjct: 155 TGLIGTVGTRIAGVDVPTSLTTPEGTALQGLFASMVEQGVTSAVMEVSSHALAQNRVGGT 214

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI----IYADDAYSKEVMK 258
           +   G+FTNL +DH+DYH T + YF AK  LF      + P      I  DD +   +  
Sbjct: 215 RFAVGAFTNLSQDHLDYHPTMEDYFAAKALLFVPDESGDGPVCEQAVICVDDEWGNRMAD 274

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEG-KDFDFLFPLPGEFQVYNA 315
              +AG  +++V   G         + H    Q+ T++  G + F     LPG + V NA
Sbjct: 275 LRRDAGLPLVTVATTGPADWTAGAVSAHADGTQRFTLTGPGGQSFSATVGLPGAYNVANA 334

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +A  +    G+  A  +  +  +  VPGR + +    +     VDYAH   +L+ ++  
Sbjct: 335 ALALVVAHEAGVPLADAVRGIGAV-AVPGRVQRID-RGQDFLAVVDYAHKPAALDAVIAT 392

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R  T+GRI VV G GGDRD+GKRP+MG++A   A++ IVTDDNPR+EDP  IRA +  G
Sbjct: 393 LRGQTAGRIAVVVGAGGDRDRGKRPLMGEVAARAAELVIVTDDNPRTEDPAAIRAAVRAG 452

Query: 436 IPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                      E G+R  AI  A++     DV+++AGKGHE    + NG K    D D +
Sbjct: 453 AEAVPGGGEVREIGDRRAAITEAVDWARTGDVVLIAGKGHEAGQEI-NGVKHPFDDRDEL 511

Query: 490 REIL 493
              L
Sbjct: 512 AAAL 515


>gi|255086996|ref|XP_002505421.1| predicted protein [Micromonas sp. RCC299]
 gi|226520691|gb|ACO66679.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 220/473 (46%), Gaps = 19/473 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +++DSR +  G +FV IVG K DGH F              + A   +     +
Sbjct: 1   DVEVSGIANDSRVVLGGDVFVCIVGEKMDGHDFALD------AVAAGAVAIVCERPIDGL 54

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
             + P +VV + R  L   A+  YG    ++  + VTG SGK++V   V+ I   + +  
Sbjct: 55  GVDVPQVVVPSARAALPRLAAAFYGNPSASLTTVGVTGASGKTTVTHMVRAILDANDVRC 114

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG T   S    D   ++P  +   + ++ +   G    ++E SS  L Q R+D    
Sbjct: 115 GVIGTTG-YSLDDYDVPTSSPDALQCQQLMAGMLDNGARATAMEVSSRDLAQGRVDCCDF 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPAIIYADDAYSKEVMKRAHNA 263
               FTNL  DH +      +  NA   LF  L  P+   A+I  D + +++  K   +A
Sbjct: 174 DVAVFTNLRGDHHE--GDAASCRNATAELFRRLTDPERQRAVINLDVSTAEDGEKPFDDA 231

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                S       + +++      +  VTI      FD +  L GE  V N   A    I
Sbjct: 232 AY--FSEAASAADVFVERADLSLFETAVTIRTPVGTFDAITGLVGEVNVSNVAAAVAAGI 289

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+ I   ++ E +E +   PGR E V    +   + VDYA T  +L+  ++++R   +  
Sbjct: 290 ALEIPLDVIAEGVEAMEPAPGRMELVD-EGQPFSVVVDYAQTPEALKRAIESVRKTGANN 348

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFI 440
           +I VFGCGGDRD  KR  MG++A + +DI  VT+DNPR+EDP KI  +I   +  +    
Sbjct: 349 VITVFGCGGDRDASKRAEMGRVADEYSDIVFVTNDNPRTEDPYKILDDITMKLQNMCRRY 408

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R  AIR AI M  + D +++ GKGHE   IV   +K    D    R+ L
Sbjct: 409 VIVDRFYAIRAAIAMAGEDDAVLICGKGHEDY-IVVGTKKHWFDDRVEARDAL 460


>gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 516

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 128/499 (25%), Positives = 220/499 (44%), Gaps = 31/499 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + Q     +      +     D+R +  G +FVA+ G    G  F   A ++GA A++  
Sbjct: 25  LAQAVGGTVHGDGGSVRGAVIDNRAVLGGELFVAMPGFHVHGAKFAADAASRGAGAVLSD 84

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SF 132
                +  +     + P ++V +        A+  + +  + + A   T           
Sbjct: 85  P----EGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYL 140

Query: 133 VQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           ++ +  R G  S  +G   + +        +TTP    L    +    + V H+ VE SS
Sbjct: 141 LRHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSS 200

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L   R+D +      FTNL +DH+DYH T + YF  K  LF +   +    +I  D  
Sbjct: 201 HALAMGRVDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQ--QRSDRQVIIVDGV 258

Query: 252 YSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLP 307
           + + + ++   +G      LS+  +      K +       ++ +   +GK+      +P
Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMP 318

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVL---EHLEKLHV------VPGRFEFVGTNSRGGRI 358
           G F   NA +A  + +  G+  +      + L  L V      VPGR E +    R   +
Sbjct: 319 GTFNAINAALAI-VMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPR---V 374

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+AH  +S +++L  +R  T GR+++V G  G RD GKRPI+G+IA +LAD   VTD 
Sbjct: 375 IVDFAHNPDSTKVLLDTMRISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDG 434

Query: 419 NPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +   E+P  IR +++ G+ G+    +E   R  AI  AI     +D +V+ G+GHE++  
Sbjct: 435 DIHEEEPSGIRRDVMAGMKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMF 494

Query: 475 VTNGEKKMSVDCDIIREIL 493
              G+  +  D  + RE L
Sbjct: 495 TPEGQYDL-DDRVVAREAL 512


>gi|301299515|ref|ZP_07205788.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852905|gb|EFK80516.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 510

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 136/513 (26%), Positives = 221/513 (43%), Gaps = 51/513 (9%)

Query: 14  LINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           L+++  +      E+K+    V+ DSR +    +F    GN +    ++  A+ +GA A 
Sbjct: 11  LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC-KGNFKP--SYLTSALEKGATAY 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128
           V    Y+          +   ++V N +K ++L  +  YG  P+N   I+A TGT GK++
Sbjct: 68  VSEQKYAE-------GMDATGIIVTNVQKAMALLGAVFYG-FPQNELFIIAYTGTKGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            A F + I  ++      +  T              + LTTP  + L   +    + G+T
Sbjct: 120 SAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMT 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS    ++R+ G+    G F N+  DHI    H T   Y + K    E+LL   
Sbjct: 180 HLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNS 235

Query: 242 SPAIIYADDAYSKEVM-----------------KRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              +I  + AY ++V                  K A  +    + + YQ  F  L K   
Sbjct: 236 KRCVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVI 295

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                         D  +   +PG++   NA  A    +  G       + L+++H +PG
Sbjct: 296 EVKGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVH-IPG 354

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG 403
           R E + T + G  IYVDYAH   SL+ +   ++  T  GR+I V G  GD+   +RP  G
Sbjct: 355 RMEIIKTKNNG-TIYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFG 413

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQ 459
           K   +  D  I+T D+P  EDP KI  EI   I     K     +R  AI  AI+M    
Sbjct: 414 KAVSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNN 473

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D++V+AGKG +    +   +     D ++ ++I
Sbjct: 474 DIVVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506


>gi|90961006|ref|YP_534922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius UCC118]
 gi|122449508|sp|Q1WVQ8|MURE_LACS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|90820200|gb|ABD98839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus salivarius UCC118]
          Length = 510

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 136/513 (26%), Positives = 221/513 (43%), Gaps = 51/513 (9%)

Query: 14  LINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           L+++  +      E+K+    V+ DSR +    +F    GN +    ++  A+ +GA A 
Sbjct: 11  LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC-KGNFKP--SYLTSALEKGATAY 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128
           V    Y+          +   ++V N +K ++L  +  YG  P+N   I+A TGT GK++
Sbjct: 68  VSEQKYAE-------GMDATGIIVTNVQKAMALLGAAFYG-FPQNELFIIAYTGTKGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            A F + I  ++      +  T              + LTTP  + L   +    + G+T
Sbjct: 120 SAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMT 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS    ++R+ G+    G F N+  DHI    H T   Y + K    E+LL   
Sbjct: 180 HLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNS 235

Query: 242 SPAIIYADDAYSKEVM-----------------KRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              +I  + AY ++V                  K A  +    + + YQ  F  L K   
Sbjct: 236 KRCVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVI 295

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                         D  +   +PG++   NA  A    +  G       + L+++H +PG
Sbjct: 296 EVKGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVH-IPG 354

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG 403
           R E + T + G  IYVDYAH   SL+ +   ++  T  GR+I V G  GD+   +RP  G
Sbjct: 355 RMEIIKTKNNG-TIYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFG 413

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQ 459
           K   +  D  I+T D+P  EDP KI  EI   I     K     +R  AI  AI+M    
Sbjct: 414 KAVSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREIAIEKAIKMSTNN 473

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D++V+AGKG +    +   +     D ++ ++I
Sbjct: 474 DIVVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506


>gi|319791663|ref|YP_004153303.1| UDP-N-acetylmuramyL-tripeptide synthetase [Variovorax paradoxus
           EPS]
 gi|315594126|gb|ADU35192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           EPS]
          Length = 517

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 141/512 (27%), Positives = 218/512 (42%), Gaps = 56/512 (10%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           W + ++   + +DSR + AG  F+A  G   DG   +  A+AQGA A +V          
Sbjct: 13  WLKERVQGALHADSRPVGAGDGFIAWPGAATDGRKHVAAALAQGAAACLVEHEGVDAFG- 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQ---QICQ 138
                +  I      +      AS  Y       ++LAVTGT+GK+S A ++       +
Sbjct: 72  --FGEDDRIASYPGLKAATGPIASAFYDNPSALLDVLAVTGTNGKTSTAWWLAESLSTLR 129

Query: 139 RSGLSSFQ-------------IGPTSTISSFAQDNRLTT----PSPIYLAKALSYLSSQG 181
            +G                       T+      +   T    P P+ +   L  L  +G
Sbjct: 130 AAGGVRAMRPDGTTERSAPSPCAVMGTLGIGVPPDLTYTGLTTPDPVMMQGELRALVERG 189

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
               ++EASS G+ + RLDG ++    FTN  +DH+DYH +  AY+ AK  LF    P  
Sbjct: 190 FGACAIEASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWEAKAELFR--WPGL 247

Query: 242 SPAIIYADDAYSKEVMKRAHNA-----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             A+I  DD +   +     +A         +S G +   +  + +       Q +++ +
Sbjct: 248 RAAVINIDDMHGASLCANLVDAGIGALDVWTVSAGGKPARLVARDIGYDAQGLQFSVTEQ 307

Query: 297 G--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G          L G++ V N L   G   A+G+  +  +     L  VPGR E V     
Sbjct: 308 GSVSVERLSTGLIGQYNVANLLGVLGTLRALGLSLSRAVAACANLTSVPGRMERVSVGGN 367

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                VDYAHT ++L+  L  +R +     G +  +FGCGGDRD  KRP+M  +A   AD
Sbjct: 368 APLAVVDYAHTPDALDKALAGLRPLAQQRGGALWCLFGCGGDRDPIKRPMMAAVAERQAD 427

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR----------TAIEMLNKQDV 461
             IVT DNPRSE P+ I ++++ G         R +A +           AI     QDV
Sbjct: 428 HVIVTSDNPRSEKPDAIISQVLRGFS-------RSDAAQVQPDRAAAIADAIAQAAPQDV 480

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKGHE    +  G++    D     + L
Sbjct: 481 VLIAGKGHEAWQEIA-GQRLPFSDKTHALDAL 511


>gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
 gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
          Length = 505

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 120/466 (25%), Positives = 208/466 (44%), Gaps = 30/466 (6%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFI----PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
             + G +F+      ED H  +      AI +GA AI+      L           P  +
Sbjct: 42  DCEPGDLFIP---EAED-HTDLLSRCQAAIERGAAAILTEQLLPLA---------IPQAI 88

Query: 95  VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           V + R+ L + +  + G     +  + +TG+ GK++ A  V  + + +  +   I     
Sbjct: 89  VPDAREALGIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAASQACGVISSLGY 148

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           + S      +  TP    LA  +S +         +E SS GL Q R  G  L     TN
Sbjct: 149 SDSIEQVSTKCATPRSPKLAWWMSRMVKNKAAAAVIEMSSQGLSQRRTAGTSLDIAVLTN 208

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L   H   H +   Y  AK R+F  L P    AII ADD  S+++++      C  L+VG
Sbjct: 209 LRNVHTSEHGSAANYLAAKKRIFSHLKP-GGLAIINADDHRSRQLLESLA---CPTLTVG 264

Query: 272 YQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 I  + +     +Q+ TI+   +       + G+  V N L A  + +++GI+ +
Sbjct: 265 LHAEADISARVIDRSIAEQRFTITAGDETIQVRSRIIGDAHVANCLSAVAVGLSLGIELS 324

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            ++  +E +  +PGR + +      G + VD A T ++L + LK  R +T GR+++VF  
Sbjct: 325 TIVRGIENVTYLPGRMQRLEVGQEFG-VIVDAASTPDTLAIALKTARRVTKGRVLLVFSA 383

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447
            G++++  RP++ ++A   AD+A++T  NPR E P +I  +++ G            R E
Sbjct: 384 SGEKNRDARPMLARVAEQGADLAVITSGNPRRESPREITHQLLDGFHRPAKAHFIPTRAE 443

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AIR A+      D +++ G G  T H+V   + +   D ++    L
Sbjct: 444 AIRWALGHAQPGDCVLICGHGDRTSHLVGTHKVR-HDDREVALTWL 488


>gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 508

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 126/484 (26%), Positives = 211/484 (43%), Gaps = 28/484 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M+L  + + +       +   P+       +  +  + +DSR +  G +F  + G   DG
Sbjct: 1   MRLPSIPWSEVEHRARTVPGSPVTRAGGADDLTVRGLVTDSRRVVPGSLFACVRGATSDG 60

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
           H  +P A A GA A++V            + ++ P L V + R  L    + L G     
Sbjct: 61  HRHVPAAAAAGAMALLVDRP---------VETSLPQLCVPSVRAQLGPLGALLAGDPARA 111

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
             ++ VTG++GK++ ++ V+ + + +G  +  +G     ++  +++  LTTP    L + 
Sbjct: 112 LGLVGVTGSNGKTTTSALVRGVLEAAGTCTGVVGTLGAQVAGLSRETALTTPEAPELHEL 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  +   G     VEASS  LD  R+DG+      FT    DH+D+H T + Y+ +K RL
Sbjct: 172 LGAMVEAGARRAVVEASSIALDMGRMDGLAFEVAVFTGFEEDHLDHHGTVEQYWASKARL 231

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           FE         +   DD + + +  +A     RV S       + +          +V +
Sbjct: 232 FEPGRTAAGVVVT--DDPWGRRLADQAAVRVTRVGS--GADADVRVLGWRTGAAGTEVLL 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +        PL G   V N   A      +G+    +   L  +    GR   +G + 
Sbjct: 288 GDDAGGHRVRSPLVGRVHVTNLAAAWATGRVLGVPPDRIAAGLAAVAPPRGRNTVLGGSG 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           R   + VDYAHT  +L   +  +R +    GR+ +V G  G RD+ KR  +G+ A   AD
Sbjct: 348 R-PVVVVDYAHTPRALAAAVDTVRDLTGPGGRVHLVVGARGRRDRYKRQGLGESA-RAAD 405

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              +T++    EDP  IRAE+  G+           +R EAI  A+      DV++V G+
Sbjct: 406 CVWLTNEGSHGEDPAAIRAELRLGLLGTPAAVRTVPDRREAITAAVRAAGPADVVLVVGR 465

Query: 468 GHET 471
           GHET
Sbjct: 466 GHET 469


>gi|325978929|ref|YP_004288645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178857|emb|CBZ48901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 483

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 132/505 (26%), Positives = 220/505 (43%), Gaps = 39/505 (7%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           K  D++  D  F E+I   + + + W+E    +++S DSR      +F    G       
Sbjct: 6   KTLDILKNDHNFREIIFH-NHYSLDWKENPSFSKISFDSREADNSTLFF-TKGATFK-KE 62

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116
           ++ QAI  G    V    Y L         + P ++V + +K +SL A   YG       
Sbjct: 63  YLEQAIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLK 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
           I+A TGT GK++ A F   I ++S  ++      +T+       ++LTTP  + L K ++
Sbjct: 114 IIAFTGTKGKTTAAYFAYNILKQSHKTAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+TH+ +E SS      R+ G+    G+F N+  DHI    H T + YF  K  L
Sbjct: 174 IAVQNGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLL 233

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                      ++ A   Y   V ++  N             F        I N +    
Sbjct: 234 MAN----SKAVVVNAGMDYFNVVAQQVANTPH---------DFYGKDSDNTIENGRAFDF 280

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            V GK    +   L G F   NA+ A   C+ +G   A + + + +   VPGR E V T 
Sbjct: 281 DVTGKLAGHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRME-VITQ 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD- 411
           + G +++VDYAH  +SLE +L  +     G + ++ G  G++ + +R    ++     + 
Sbjct: 339 TNGAKVFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNL 398

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGH 469
             I+T D+P  EDP+ I  EI   +   ++   +R +AI  A+   N + D +++AGKG 
Sbjct: 399 HVILTADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGA 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +   IV       + D +I +  L 
Sbjct: 459 DAYQIVNGERTAYAGDLNIAKNYLN 483


>gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 511

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 130/515 (25%), Positives = 217/515 (42%), Gaps = 32/515 (6%)

Query: 1   MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52
           M L  +I        F ELI         P +   R + ++S DSR ++ G +F    G 
Sbjct: 3   MTLSGIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K D   ++  A  QGA   +  + YS Q    +   + P ++V + +K ++  +   +G 
Sbjct: 62  KFD-PKYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGY 119

Query: 113 HPENI--LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPT--STISSFAQDNRLTTPSP 167
              N+  +  TGT GK++   F + +  ++ G    Q+                LTTP  
Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           + L + +       + ++ +E SS    + R+ G+ L  G F N+  DHI    H + + 
Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFED 239

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y   K  + +         ++  + +    + ++AH+ G +V+S G        +     
Sbjct: 240 YLACKSEIIDNC----RILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGE 295

Query: 286 HNKQQVTIS---VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           H    VT +   +   D DF   +PG+F V NAL A  +   +   S      L +   V
Sbjct: 296 HGYFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVTAQVAPVSEDFRAGLAE-TTV 354

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR EF+  + +G    VDYAH   SL      ++     GR+IVV G  G + + +R  
Sbjct: 355 PGRMEFIK-DKQGVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKD 413

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           +G+     AD+AI+T ++   EDP +I A+I   I       I   +R  AI  A  M  
Sbjct: 414 IGRALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAK 473

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             D L +A KG ET       +     D  I +++
Sbjct: 474 PGDALFMAAKGRETFMHEKGKDVPYQGDYQITKQL 508


>gi|256832301|ref|YP_003161028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
 gi|256685832|gb|ACV08725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
          Length = 534

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 139/520 (26%), Positives = 224/520 (43%), Gaps = 41/520 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L++ + +      + +++ ++  +  ++ G +FVA+ G +  G  +I QAI  GA  
Sbjct: 11  LQSLVHTVPVQVHAMADAQVSGLAIQTARVRPGDLFVAVAGQRSHGAQYIEQAIHAGARG 70

Query: 71  IVVSSAYS--LQDFSATIRSNTPILVVDN---TRKFLSLFASRLYGKHPENILAVTGTSG 125
           ++   A     ++  A++    P+LVVD+    R+     A+ +YG+    +     T  
Sbjct: 71  VLTDEAGYRIARELDASVGHELPVLVVDDGHDVREIAGQVAATIYGQPAARLTTAGITGT 130

Query: 126 KSSVAS--FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                +  F+  I + +G  +  +G   T +      +  TT     L   L+    + V
Sbjct: 131 NGKTTTTFFLDAILRTAGHHTGLMGTVETRLGDHTVSSTRTTVEAPELQGFLARCLEEEV 190

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T VS+E SSH L  HR+ G +     FTNL RDH+D+H +   YF AK +LF     +  
Sbjct: 191 TAVSMEVSSHALALHRITGTQFDVVGFTNLQRDHLDFHGSMAEYFAAKAQLFHSDYARAG 250

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI------HNKQQVTIS-V 295
              I  DD +  ++  +A      V +   +   +H             +   Q  +   
Sbjct: 251 V--INVDDDWGVQLHHQATIDTWSVATTPERAAHVHADWTVVEVGDYQPNYGTQFVLQGP 308

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+       LPG   V NA +AA +    G+    + E L  LH +PGR E V   ++ 
Sbjct: 309 HGQRLRCHSALPGTVNVANAALAALMARLAGVSDNNITEGLRSLHSIPGRMEVVSKPAQP 368

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI---------TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             I  DYAHT+ +L+  L ++R           T G + VV G  GDRD  KRP MG +A
Sbjct: 369 LTIV-DYAHTAEALDFALSSLRQDLAARAHESGTHGVLRVVCGAAGDRDPSKRPEMGAVA 427

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------------GFIEKGNRIEAIRTAI 453
             LAD+  + DD+P  ED   IR +++ G                  E   R  AI   I
Sbjct: 428 ARLADVVYIADDDPHGEDRATIRQDLLKGAQSEAQRQAAHGRIIDVKEYDQRESAIDDVI 487

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +  D++++AG+GHETV  +  G      D    R  L
Sbjct: 488 AAASDGDIILIAGRGHETVQDMA-GVPHELDDRRHARRAL 526


>gi|226325275|ref|ZP_03800793.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
 gi|225206623|gb|EEG88977.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
          Length = 505

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 113/486 (23%), Positives = 210/486 (43%), Gaps = 32/486 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E+ +  ++ DSR +  G +F+   G       ++  AI +GA A V    Y  ++    
Sbjct: 28  EEKNVGYLTYDSREVTEGTLFIC-KGAAFK-AEYLDAAIEKGAIAYVSEVKYETKE---- 81

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQI----CQR 139
              + P  +VD+ RK +   A +      + +    + GT GKS+ A +++ I     + 
Sbjct: 82  ---DVPYFLVDDIRKAMPPLAEKFNNAPWKKLTITGIGGTKGKSTSAYYMKAIVDDYMEA 138

Query: 140 SGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +G     +  +  I      +++ +TTP  + L + L +    G+T   +E SS  L  +
Sbjct: 139 TGGKESAVLSSIDIYDGVIKKESHITTPESVELQEHLRHAVESGITFAEMEVSSQALKYN 198

Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           R+D ++   G F N+  DHI    H   + YF++K+++F     K    ++  D  ++  
Sbjct: 199 RVDNMQFDVGIFLNISEDHISPIEHPDFEDYFSSKLKIF----GKSRYGVVNMDADFADR 254

Query: 256 VMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++K +     +VL+   +     ++  ++    ++    +  E  D +F   +PG F V 
Sbjct: 255 ILKESK-VCEKVLTFSTKNPEADVYGYEIQKDGHETVFMVKTELFDEEFRLTMPGLFNVE 313

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL      I + I    +   L +     GR E  G+  +     VDYAH   S E + 
Sbjct: 314 NALAVIAASILLEIPKEYMHSGLLRARS-SGRMELYGSADKNLIAVVDYAHNKLSFEKLF 372

Query: 374 KNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +I+       IV +FGC G +   +R  +G +A   A    +T ++P  E  E+I  EI
Sbjct: 373 SSIKDEYPDYNIVSIFGCPGKKAFIRRRDLGTVAGQYAKKVYLTAEDPGYEPVEQISKEI 432

Query: 433 IHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              +      +    +R EAI+ A++    + + ++ GKG+ET             D   
Sbjct: 433 AQYVEAQNCPYAMIEDRGEAIKAAMDEAEGKTIFLITGKGNETRQKYGCEYLDCKSDTQY 492

Query: 489 IREILG 494
           ++E L 
Sbjct: 493 VKEYLA 498


>gi|139438500|ref|ZP_01772016.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
 gi|133776039|gb|EBA39859.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
          Length = 505

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 136/509 (26%), Positives = 219/509 (43%), Gaps = 36/509 (7%)

Query: 6   LIYKDFPELINQLSIF---PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L    + EL+ +  +    P    +++I   + DSR ++ G +FV   G       ++  
Sbjct: 9   LTLMRYIELLEEDDLVVSRPSASCDQRIEFATDDSRQVRPGTLFVC-KGRAFK-REYLLS 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AIA GA A V    Y +         + P ++V + R+ L++ A   YG     +   A 
Sbjct: 67  AIADGAVAYVSEVDYDV---------DLPAVIVSDIRRTLAVVADAFYGHPSGKVKVCAF 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD------NRLTTPSPIYLAKAL 174
           TGT GKS+ + +++ I       +    P         D      ++LTTP    L   +
Sbjct: 118 TGTKGKSTCSFYLRGILANEAKLTGCHRPALNTGIEFDDGIEAGPSKLTTPESFLLQSRI 177

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMR 232
           ++ +  G   + +EASS GL   R   I    G+FTN+G DHI    H T + YF +K++
Sbjct: 178 AHAAEAGAPWLVMEASSQGLKYERTGKIAFEVGAFTNIGEDHISPIEHPTLEDYFASKLK 237

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQV 291
           +F +       A++  D      V++ A      V  S+  +   +    +         
Sbjct: 238 IFSQ----SRFAVVNLDMDKVDRVLEAASRCERTVTFSLTDERADVFALAIRNGDCGVVA 293

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+       D + P P +F V NAL A      +GI    ++   E +  VPGR E   +
Sbjct: 294 TVRTPRFTRDIVIPTPVKFNVSNALAAIACAEVLGISEEGIVHGFEGVF-VPGRMELYPS 352

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            S      VD+AH   SLE +L+++R       + VVFG  G +   +R  MG  A   A
Sbjct: 353 VSGKILGIVDFAHNGMSLETLLRDLRENYPERELAVVFGATGGKGVDRRTTMGIAAGKYA 412

Query: 411 DIAIVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D  ++T+D+P  ED E I AEI       G   +    +R+ AI  A+    +  V++V 
Sbjct: 413 DRIVITEDDPGPEDVEDICAEIARNVQAQGNDNWQIVTDRVAAIEAAVRETVRPAVVIVT 472

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKG E   +  NG +    D  I++  L 
Sbjct: 473 GKGEEERMLRKNGPEPCERDGSILKRTLA 501


>gi|325284699|ref|YP_004264162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324316188|gb|ADY27302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 504

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 126/482 (26%), Positives = 196/482 (40%), Gaps = 25/482 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL        +         W   +++ V+  +  +  G +F AI G + DGH F+
Sbjct: 5   MLLSDLASHL---SLRSGPSVETGWAAAEVSAVTHRADWVTPGALFAAIRGERHDGHAFL 61

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A  +GA A +           A   S  P L V + R  L+  A+ L G       ++
Sbjct: 62  QEAAERGAVAALGE------GLPAGQHSPLPYLQVPDARAALADAAALLSGHPSRELKVV 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKAL 174
            VTGT GK++ +     + +  G S+  +             A     TTP    L   L
Sbjct: 116 GVTGTDGKTTTSWLTAALLRAGGQSTGLLSSAGYQLPDGQLRAYPAHFTTPEAPQLQGLL 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +         +E SSH L   R+ G+   A  +T+L ++H+D+H T + YF AK RL 
Sbjct: 176 REMVDARAQAAVIETSSHALTLERVRGVAWDAAIWTHLSQEHLDFHGTLEDYFAAKRRLI 235

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTI 293
           E        A++  DD +++ +  R         S    G       +      +    +
Sbjct: 236 ER----APLAVLNLDDPWTRHL--RGVAPQELTYSAAQAGADWRASDLRGEAGGRASFAV 289

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                 F    PL G FQ+ NAL A       G+ +A +   L +    PGR E V +  
Sbjct: 290 DGPAGRFRATLPLAGAFQMGNALAAMAAAHHFGVSAAELQAGLREFGGPPGRMETVPSRP 349

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
              R+  D AHT  SLE  L+ +R +T G++  VV    G RD  K   M  +A   AD 
Sbjct: 350 GQPRVVSDSAHTPLSLENTLRALRPLTGGQLWAVVGSAAGGRDTSKWGPMAAVASAWADQ 409

Query: 413 AIVTDDNPRSEDPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I+T+ + R    E+I   +    G   +   G+R +AI  A+      D +++A KG E
Sbjct: 410 VILTEADHRETPLEQILEAMSAAAGQDNWQCIGDRAQAIAYAVTHAGPDDTVLIANKGGE 469

Query: 471 TV 472
             
Sbjct: 470 HF 471


>gi|332687175|ref|YP_004456949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371184|dbj|BAK22140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 510

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/490 (23%), Positives = 205/490 (41%), Gaps = 32/490 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P  + ++ ++ +S +S+ I    +F    G       ++  A+  G    +    Y + 
Sbjct: 31  LPNAFNKQFVDHLSYNSQDITKNTLFFC-KGLNFK-KDYLVDAVQNGLSIYISEQPYDVP 88

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQ 138
                       ++V + +K +++ +   Y        ++  TGT GK++ A F + I  
Sbjct: 89  ADLG--------IIVSDVKKAMAILSMAFYNYPQNKLKVIGFTGTKGKTTAAYFAKSILT 140

Query: 139 RS--GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            +  G ++      ST+       ++LTTP  + L + ++      +TH  +E SS    
Sbjct: 141 NATKGKTAMLSTMCSTLDGKTFFKSKLTTPESLDLYRMMNEAVQNNMTHFVMEVSSQAYK 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             R+  +    G F N+  DHI    H T   YF  K ++           I+  +  Y 
Sbjct: 201 IDRVYQLFYDVGIFLNITPDHISPIEHPTFDDYFYCKRQIIAH----SKQIILNRETDYF 256

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPG 308
           + + + A       +  G Q                     V  KDF     D+   L G
Sbjct: 257 QLLKETADYFNVPTIVYGNQPTTEVDYWYQKKSQDSLAFTIVAEKDFLFISGDYQLHLAG 316

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   NAL A      +G +       + +  +VPGR E +  N    ++Y+DYAH  +S
Sbjct: 317 DFNKSNALSAVIASSLLGANKKDCQTGINE-TIVPGRMELLK-NKNNAQVYIDYAHNYDS 374

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           L  +L  ++    +GR+IVV G  G++   +R   G +    ADIAI+T D+P  EDP+ 
Sbjct: 375 LYHLLSFVKQDHKNGRVIVVIGSTGNKGISRRKDFGAVLSKFADIAILTMDDPADEDPKA 434

Query: 428 IRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  EI + I   +      +R +AI+ A+EM    D +V+AGKG +    +   +     
Sbjct: 435 ICQEIANSITTNVTSFITVDRKKAIQQALEMSQPADAVVLAGKGADLYQKIKGEDIPYEG 494

Query: 485 DCDIIREILG 494
           D +I +E++ 
Sbjct: 495 DSNIAKELIN 504


>gi|325690643|gb|EGD32644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK115]
          Length = 481

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 126/500 (25%), Positives = 219/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDH- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +D  + + V ++  +        G             I + Q  +    G
Sbjct: 236 ---SRAVIVNSDMDHFQIVKEQVASMEHDFYGAGSSN---------TITDSQAFSFEAAG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGHYDIQLIGRFNQENAIAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KVFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPIAIAEEIASYISYPVEKIADREEAIKKALSLTDQEGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVAYPGDYALAEKYL 481


>gi|328946898|gb|EGG41035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1087]
          Length = 481

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/500 (25%), Positives = 218/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDCISYDSREADASTLFF-VKGEAFK-REFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +   Y + V ++             +  F        I + Q  +    G
Sbjct: 236 ---SRAVIVNSGMDYFQIVKEQVA---------SLEHDFYGAGSNNTIKDSQAFSFEAAG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGHYDIQLIGRFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH   SL  +L  ++    G+II++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KVFVDYAHNGVSLSNLLSVVQEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVTYPGDYTLAEKYL 481


>gi|224419204|ref|ZP_03657210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253828133|ref|ZP_04871018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313142708|ref|ZP_07804901.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511539|gb|EES90198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313131739|gb|EFR49356.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 434

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/474 (26%), Positives = 199/474 (41%), Gaps = 59/474 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +    +S DSR +     F     +K     ++ +A  +G +  V               
Sbjct: 9   KDFKFLSDDSREVSKDCAFFVTQSSK----KYLKEAQEKGCKFFVTPKE----------- 53

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                             +S L  K     + +TGT+GK++ A+ +  I    G     +
Sbjct: 54  -----------------LSSYL--KLNLQCIGITGTNGKTTTAAMIYSILLDMGYKVGLL 94

Query: 148 GPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           G           +   LTTPS + +  A++    +G     +E SSH + Q+R++G++  
Sbjct: 95  GTRGFFINGIQKRPKGLTTPSTLEIYTAINEAKQEGCEFFVMEVSSHAITQNRIEGLEFA 154

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+  DH+DYH+T + Y   K   F          +I  D+       K A     
Sbjct: 155 LKILTNITSDHLDYHKTLENYIATKNSFFSN---PNDKKLINKDE-------KNAQYPLQ 204

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L+ G +       K  ++       I+   +      PL G+  +YNAL A G    +
Sbjct: 205 NTLTYGIESTSTFSIKAYSLKGGITAQITYGSQVATLDSPLLGKHNLYNALAAIGAVQML 264

Query: 326 -GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
                  +   LE    V GR + +   ++   I VD+AHT + +E I +   +    +I
Sbjct: 265 TQKPLQEIANQLENFGGVMGRMQII---NQKPLIVVDFAHTEDGMEQIFQ---SFLHQKI 318

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GF 439
            V+FG GGDRD+ KRP MG  A   A    +T DNPR+EDP+ I  EI+ GIP       
Sbjct: 319 AVLFGAGGDRDKTKRPKMGFCASKYAQKIYITSDNPRNEDPKTIMQEILSGIPQSKRSRV 378

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I + NR  AI+ AI  L + +VL+V GKG ET  I+ +       D + I++ L
Sbjct: 379 ILEENRALAIQKAIAELKEDEVLLVLGKGDETYQIIGDRTLH-FDDSEEIKKAL 431


>gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
 gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
          Length = 510

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 136/506 (26%), Positives = 221/506 (43%), Gaps = 24/506 (4%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L++ +S++ +       I+ +  DSR +  G +FVAI G   DGH FIPQAI   
Sbjct: 3   KTLADLLSGVSVYHLIGDPATPISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAI--- 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG--TSG 125
             A   +     + +   + +  P++VV ++R  L+  A+  Y    + +  +    T G
Sbjct: 60  -AAGAAAVVVDQRYWHGAVSAEVPVVVVADSRVALAPLAAAFYEYPGQQLTTIGITGTKG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQ--DNRLTTPSPIYLAKALSYLSSQGV 182
           KS+      Q+   +G +   I      I +     D R +TP    +   L  +   G 
Sbjct: 119 KSTTTDLTAQLLAAAGRTVGMISTVDFQIGTRRWPNDTRQSTPEAPEVQALLREMVVAGC 178

Query: 183 THVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +EA+SH L     RL G         N+G +H+D+H T + Y   K +LF  L  +
Sbjct: 179 DTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAER 238

Query: 241 ESPAI--IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             P    + ADD +    +    +   R+    +    +  + V +      + I     
Sbjct: 239 HGPTWAIVNADDPHHGTFLAAVPSQTMRLRYALHAPADVQGQIVHSGPASSHMRIHSPWG 298

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + +   PLPG F   N L A  + +  G+        +  +    GR   +    +   +
Sbjct: 299 EIEVNVPLPGRFNASNVLAALTVALTQGVPLERAAAAVAHVRAPRGRMVSINV-GQPFTV 357

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH  +S E I   +R   +GRII VFG  G+RD  KR I G+IA  + D+ ++TD+
Sbjct: 358 IVDYAHNPDSFEQIFTMLRPQVTGRIIAVFGSAGERDVSKRAIQGEIAGRMCDLLVLTDE 417

Query: 419 NPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +PR ED E I A+I  G          G++   NR +AIRTAI      D++++ GKGHE
Sbjct: 418 DPRGEDREAIIAQIAAGAERAGKRPGSGYLCIPNRAQAIRTAIAAARPGDMVLLLGKGHE 477

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496
              I  +       + +  R  L  +
Sbjct: 478 GSIIYADYTLPWDEEGE-ARRALAEL 502


>gi|296110395|ref|YP_003620776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295831926|gb|ADG39807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 491

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 124/517 (23%), Positives = 225/517 (43%), Gaps = 53/517 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINE----VSSDSRHIQAGWIFVAIVGNKEDG 56
           MKL     +   +L+N   +      + ++ +    +  D+R ++A  +FV + G     
Sbjct: 1   MKLS---SETIQQLLNDEHLL---VSKPEVTQTFDFLHYDTRQVKANTLFV-VKGA---- 49

Query: 57  HLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--K 112
             F P+ + Q  G   +V  +   +         + P   V + +K LS+ +   +G  +
Sbjct: 50  --FRPEYLTQTDGVSGLVTETRLDV---------SLPQWQVTDVQKALSILSMAFFGYPQ 98

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-----GPTSTISSFAQDNRLTTPSP 167
           H   I A TGT GK++ A     I + +      +       T   S   + + LTTP  
Sbjct: 99  HDLWIGAFTGTKGKTTAAYMAYNILKNTTDKHVALFSTVDRITGNNSEDKKKSDLTTPES 158

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
             L K +      G+TH+ +E SS    + R+ G++   G+F N+  DHI    H T + 
Sbjct: 159 YELFKDMRRSVDNGMTHLVMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIGPNEHPTFED 218

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVC 283
           Y   K+ LF+         II A+  +  E+M  A      V +    GK          
Sbjct: 219 YLAHKLMLFDH----SDQVIINAESDHLSEIMTHAKQTHDLVYTYSLAGKGGAYTYTSQE 274

Query: 284 AIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +  ++ ++T+    ++     +   LPG+F   NA+ A  +    G     ++  L+++ 
Sbjct: 275 SAIHESRLTVLPSDLKALAGHYRLNLPGDFNESNAMAALIMSALAGASHDNMIRGLDEVF 334

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKR 399
            +PGR   +  +  G   +VDYAH   S+  +L+        GR++VV G  G++   +R
Sbjct: 335 -IPGRMLSLPISGHGVT-FVDYAHNYASMHALLRFAQNQYPEGRVLVVVGSPGNKGVSRR 392

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEM 455
              G++  +LAD+  +T D+P+ E P  I  EI   I     +     NRI+AI  AI  
Sbjct: 393 ADFGRVVSELADVVYLTADDPQFESPMVIAKEIASHITSETLEVHFEMNRIQAINQAISQ 452

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             ++D+++VAGKG +    +   ++    D  ++++ 
Sbjct: 453 ATEKDIVIVAGKGEDPYQKINGVDEPYIGDYAVVKQY 489


>gi|332670122|ref|YP_004453130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
 gi|332339160|gb|AEE45743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
          Length = 526

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 148/501 (29%), Positives = 229/501 (45%), Gaps = 33/501 (6%)

Query: 11  FPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             +++   ++ P +  +  +    V+  S  +  G +FVA+ G +  G  +  QA+  GA
Sbjct: 17  LADVVETFALSPDRPLDAALVTTGVTVASTDVAPGDLFVAVPGMRVHGATYAAQAVDAGA 76

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A+V  +A +            P+LV  + R      A+ +  +    ++ V  T     
Sbjct: 77  VAVVTDAAGA----ELAGDLGVPVLVAPDPRDLAGPLAAHVLDEPARGLVTVGVTGTNGK 132

Query: 129 VA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                FV    + +  ++  +G     +   A ++  TT     L   L+    +G   V
Sbjct: 133 TTTTYFVDAALRAAHRTTAVLGTVELRVGDEAVESPRTTVEAPALQGILALARERGAGAV 192

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH L   R+ G+      FTNL RDH+D+H   + YF  K RLF     +    +
Sbjct: 193 AMEVSSHALALGRVRGLTFDVVGFTNLQRDHLDFHGDMEGYFRDKARLFAPEQARRGVVV 252

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---------LKKVCAIHNKQQVTIS-V 295
           +  DD + + +   A  +   V +V       H            +         T+   
Sbjct: 253 V--DDEWGRRL---AATSPVPVETVATHVGDPHGADADWAVVAADIGLDGVGSTFTLRGP 307

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G +     PLPG   V NA +A  L    G+D A  ++ +   H +PGR E V     G
Sbjct: 308 DGTEHAAASPLPGLVNVSNAALAIVLAHTAGVDLATAVDAVAHAHEIPGRMERVVERGDG 367

Query: 356 -GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                VDYAHT ++L + L+ +R IT GR+I+VFG  GDRDQGKRPIMG+IA  LAD+ +
Sbjct: 368 LPLCLVDYAHTPDALVLALEAVRPITPGRLILVFGSDGDRDQGKRPIMGQIAARLADVLV 427

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           VTD+NPRSEDP  IRA I+ G+           E  +R +AIR A+ +   QD ++V GK
Sbjct: 428 VTDENPRSEDPAVIRAAILEGVRAERPSGTDVHEATSRAQAIRDALALATDQDTVIVTGK 487

Query: 468 GHETVHIVTNGEKKMSVDCDI 488
           GHE    +  G      D D+
Sbjct: 488 GHEPTQEIA-GVFHRYNDRDV 507


>gi|312196217|ref|YP_004016278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
 gi|311227553|gb|ADP80408.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
          Length = 522

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 158/481 (32%), Positives = 236/481 (49%), Gaps = 20/481 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  ++ V+ DSR +Q G ++ A+ G+   G  F   A A GA A++   A +    +  
Sbjct: 40  PEVVLHGVTHDSRAVQPGDLYAALPGSHAHGADFAAAAAASGAAAVLTDPAGAA---ALA 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
              + P++   + R  ++  A  LYG+   ++  L VTGT+GK++ A  V    + +G  
Sbjct: 97  GSVDLPVVTTADPRSDVAQVADWLYGQPSRSLTLLGVTGTNGKTTSAFLVDAGLRAAGHR 156

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G   T I+    D+  TTP    L    + +  +GVT  ++E SSH L QHR+DG+
Sbjct: 157 TGLLGTVETRIADERVDSVRTTPESSDLQALFAVMVERGVTAATMEVSSHALAQHRVDGL 216

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRAH 261
           +     FTNL +DH+DYH T + YF AK RLFE   P+ + A +   +  +    ++ A 
Sbjct: 217 RFAGALFTNLSQDHLDYHPTMRDYFEAKARLFE---PERTAASVIGIEPGAGTWGLELAA 273

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAG 320
                V              +         T     G        LPG F V NAL A  
Sbjct: 274 RVPGSVTYAPDPPADWWADDLTVGARGSSFTARGPRGLAVPMEVRLPGRFNVANALGALA 333

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A GI+       +  L  VPGR E +    +     VD+AHT +++E +L ++R + 
Sbjct: 334 LLVAAGIEPRAAAAGIGTLAGVPGRMEPI-EAGQPYLALVDFAHTPDAVETVLTSVRGLV 392

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---- 436
            GR+IVV GCGGDRD+ KRP+MG  A  LAD+A +T+DNPRSEDP +I A++  GI    
Sbjct: 393 DGRVIVVLGCGGDRDRAKRPLMGAAAARLADLAFLTNDNPRSEDPAEILAQMTAGIDRVA 452

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     +R EAI  A+      DV+VVAGKGHE      NG      D  ++ + +
Sbjct: 453 TSAAKVTVIPDRAEAIAAAVAEAGPGDVVVVAGKGHERGQE-QNGVVTPFDDRAVLAQAI 511

Query: 494 G 494
            
Sbjct: 512 A 512


>gi|332654846|ref|ZP_08420588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332516189|gb|EGJ45797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 665

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 135/508 (26%), Positives = 218/508 (42%), Gaps = 43/508 (8%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           Q+L+    P+ ++         R +++  ++ DSR +  G +F+   G       F+  A
Sbjct: 18  QNLLAAPIPDGLD---------RNQRVTGLTCDSRQVAPGTLFI-RKGAHFQT-KFLEMA 66

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
             QGA A V     ++           P + + +TRK L+  A R Y      +  + +T
Sbjct: 67  RDQGAMACVSQEEDTV--------PGLPRIAITDTRKALAPLADRFYDHPSGKLKVIGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-------AQDNRLTTPSPIYLAKAL 174
           GT GKSS A +++ I  R   S  + G T  +SS          ++ LTTP P+ L +  
Sbjct: 119 GTKGKSSTAYYMKSILDRYQESQGR-GETGVVSSIDTYDGVERFESHLTTPEPLDLQRHF 177

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMR 232
           +  +  G+ +V++E SS  L  HR    +  A  F N+G DHI    H   + YF +K++
Sbjct: 178 ANAAQTGLEYVTMEVSSQALKYHRSLCTEFAAACFLNIGYDHISPIEHPDFEDYFASKLK 237

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQ 290
           +F +       + +  D  +++ V++ A  AG  +++    Y    ++   V     +  
Sbjct: 238 IFAQ----AHISCVNLDCDHAQRVLEAAQAAGAPIITFSQKYPAAQVYASDVHKEDGQIL 293

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+            +PG F V NAL AA LC A+ I    V + L +   VPGR E   
Sbjct: 294 FTLRTPRYTRQMRLTMPGLFNVENALGAAALCEALDIPEWAVYDGLVRAR-VPGRMEVYA 352

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                    VDYAH   S E +  ++R       + +VFGC G +   +R  +G+ A   
Sbjct: 353 NADGRVLSIVDYAHNRLSFETLFSSVRAEYPERELAIVFGCPGKKAYDRRHDLGEAAGAW 412

Query: 410 ADIAIVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D   +T+++   ED   I  EI      G        NR EAIR A+    K  VL++ 
Sbjct: 413 CDRVYLTEEDSGEEDTLDICQEIRPNVEKGKARCRIIPNRGEAIRQAVLESEKPTVLLLT 472

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKG ET             D + ++  L
Sbjct: 473 GKGRETRQKRGTEYIDTPTDVEYVQAFL 500


>gi|325962944|ref|YP_004240850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469031|gb|ADX72716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 550

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 147/496 (29%), Positives = 233/496 (46%), Gaps = 29/496 (5%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P    +  +  +S +SR ++ G ++VA+ G    G  F  QAI  GA AI+   A + 
Sbjct: 47  VVPGASADVAVTGISLNSRTVERGDLYVALPGAVRHGADFAAQAIEAGAAAILTDDAGA- 105

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQ 134
           +  + +  +  P+LVV   R  +   ++ +Y  +     P  +  VTGT+GK++   F+ 
Sbjct: 106 RLLALSSDTAVPVLVVGAPRNVVGPLSAMIYRSNSTEGTPLQMFGVTGTNGKTTTTYFIT 165

Query: 135 QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            + +  G  +  IG    +       + LTTP    +   L+ +   G+T  ++E SSH 
Sbjct: 166 SLLRSLGKKTGLIGTIEILAGGSPVPSLLTTPESPDVHGLLALMRENGLTAAAMEVSSHA 225

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +   R+DG+      FTNL +DH+D H T + YF  K  LF     +   A++  DD + 
Sbjct: 226 ISYQRVDGVTFDVAGFTNLTQDHLDLHHTMEDYFATKAELFTP--ARARKAVVTVDDEWG 283

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQV 312
           + +   A      + +         + +  A     + T+   G         LPG F V
Sbjct: 284 RRLAGAAAVPVITLSTSAQHPGDWTVTETAARGLGTEFTLRGPGGTRLRVHTGLPGTFNV 343

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            NA +AA + +A G+D+A +   L+        VPGR + V          VD+AH +++
Sbjct: 344 ANAALAAVMVLAGGVDAATLQAALDAEDPFTVAVPGRMQLVSEQ---PAAVVDFAHNTDA 400

Query: 369 LEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           L   L+ +R+   G R+IVVFG  G RDQGKRP MG IA  LAD  IVTDD+P  ED   
Sbjct: 401 LARALEAVRSPEPGSRLIVVFGATGQRDQGKRPAMGAIAARLADTVIVTDDDPHDEDAAA 460

Query: 428 IRAEIIHGIPGF----------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           IRA+++ G               E   R +AI+ A+E+   +D ++VAG+GHE    V  
Sbjct: 461 IRADVLAGAREAKARDSLPCILEEVFPRDKAIQRAVELARPEDTILVAGRGHEVWQEVKG 520

Query: 478 GEKKMSVDCDIIREIL 493
               +  D   +R  L
Sbjct: 521 VNLAL-DDRVELRSAL 535


>gi|306779455|ref|ZP_07417792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
 gi|308327593|gb|EFP16444.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
          Length = 425

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 136/414 (32%), Positives = 192/414 (46%), Gaps = 14/414 (3%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
               R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +
Sbjct: 2   EIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAA 61

Query: 141 GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+
Sbjct: 62  GRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRV 121

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M  
Sbjct: 122 DGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAA 181

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVA 318
                  V +      +            QQ T I   G        LPG + V N LVA
Sbjct: 182 RAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVA 241

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L  +  
Sbjct: 242 LAILDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVLTTL-A 298

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
               R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G   
Sbjct: 299 HPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAE 358

Query: 439 F------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                  +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 359 VGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 411


>gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 499

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 124/474 (26%), Positives = 217/474 (45%), Gaps = 19/474 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + IN ++  S+ +  G +F +I G  EDGH +I +AI +GA A+  +S   L+  S    
Sbjct: 22  QTINHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGAVAVFGTSIEELRLLSTQY- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S+   L VD+ RK ++ F+   +    E I  + VTGT+GK++VA++V+ +     L + 
Sbjct: 81  SHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRSLLTLLKLPTG 140

Query: 146 QIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG T   SS      + +  TTP  + L K    L ++G     +E SS  +DQ R++ 
Sbjct: 141 SIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAIDQQRVED 200

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I       TNL  +H++YH+T + Y   KM+LF++       A+I  DD    + + R  
Sbjct: 201 IYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQ----AKHAVINIDDQDMGKDLSRLF 256

Query: 262 NAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  S+    +     K +          +  +G+ +    P+ G++ + N L A G
Sbjct: 257 EGPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAVPVYGDYNIANVLAAIG 316

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +        ++  L +L    GRF+ V       ++ +DYAHT  +L  +++ ++ + 
Sbjct: 317 TALHFEYHIEDIISVLPQLESPEGRFQ-VVEGPNNQKVILDYAHTPVALTRLVEEVKKME 375

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---- 436
             ++IV+    G RD  K P M ++    AD  IVT D+P   DP  I  +++ G     
Sbjct: 376 YNQLIVMIAGIGIRDFNKMPKMARVIEGKADEIIVTVDHPGHHDPNVIVDQVMTGFSNPS 435

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                    R E +  ++ +    D++++         +V   E   S D +II
Sbjct: 436 ASNIHRAPTRTEGVLKSLSLGKPNDIILLTSGCINGAQLVKGNEIPHS-DEEII 488


>gi|297625038|ref|YP_003706472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
 gi|297166218|gb|ADI15929.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
          Length = 504

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 227/513 (44%), Gaps = 34/513 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW------IFVAIVGNKE 54
           MKL  LI      L    +   +   E ++  +  D+R +          IFVA  G   
Sbjct: 1   MKLAHLIR---AALGPDATWSHLPLPEVEVRRIVQDTRELTPSDPATEPFIFVARRGAAV 57

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DGH F  +A+AQ     VV  A   +  S   R   P + V + R  L+  A+ LYG   
Sbjct: 58  DGHRFAARAVAQ-GAVAVVGEATPEEQASFAWRHAAPYIQVPDDRAALAQLAATLYGHPS 116

Query: 115 ENI--LAVTGTSGKSSVASFVQQICQ--RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
             +  + VTGT GK++ A+ +  + Q  R        G     +        TTP    +
Sbjct: 117 RALFTVGVTGTDGKTTTATLLHHLLQGDRPTGLLSTAGVRLGEAEGGLFGHFTTPEAPEV 176

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L+   ++G+    +E+SSHG  Q RLD I    G  TNL  +H+D+H T + Y  AK
Sbjct: 177 QRTLAAFVARGLRAAVIESSSHGFAQRRLDAIDYDLGILTNLSPEHLDFHGTFENYRAAK 236

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
            +L          +I+ ADD        RA     R+++ G  +       +V  +    
Sbjct: 237 AQLMAR----ARTSILNADDPNYAYFAARAR----RIITYGVVRAATWRATEVRELPGAL 288

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  ++  G+ +    P+ G + VYNAL A       G+  A  L  L     VPGR + V
Sbjct: 289 EWRLTHAGRSYPARLPMVGSYNVYNALAALAAACEAGVPLAGALARLATFPGVPGRMQVV 348

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T      + VD+AHT  +LE  L  +R    G++IVV G  G+RD GKR  +G  A   
Sbjct: 349 QTA--PFALVVDFAHTPPALEKALAALRPQVRGKLIVVVGAAGERDPGKRAPLGAAAARG 406

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDV 461
           AD+A+ T+++ RSEDPE I A++  G  G        F  + +R  AIR A+ +    D+
Sbjct: 407 ADLAVFTEEDARSEDPEAILAQLRAGAQGAGGRLGETFWLEPDRRAAIRRAVTLAEAGDL 466

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +++AGKGHE      +       +    R  L 
Sbjct: 467 VLLAGKGHERTLERRDETLPW-DEVAEARRALA 498


>gi|148273045|ref|YP_001222606.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830975|emb|CAN01920.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 514

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 135/480 (28%), Positives = 220/480 (45%), Gaps = 28/480 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V+  S  +Q G ++V + G +  G  F   A A GA A++          +    S  
Sbjct: 40  TGVTLSSGDVQPGDLYVGLRGVRVHGARFAADAAASGAVAVLTDPDG----LADAQGSGL 95

Query: 91  PILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++  + R  L   A+ ++   ++P  +  VTGT+GK+SV   +  + ++ G+ +   G
Sbjct: 96  PVILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVT---G 152

Query: 149 PTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            TST    I   +  +RLTTP    L   L+ +    V  V++E S+  L +HR+DG+  
Sbjct: 153 LTSTAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVF 212

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +F NL  DH+D +   + YF+AK   F+    +     +  D  + + ++  +    
Sbjct: 213 DIAAFINLSHDHLDDYADFEEYFDAKAAFFDPDRARRGVVSL--DTEWGQRIVDGSRIPM 270

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCI 323
             + S         +  +    +     +            P+PG F   NA +A  + +
Sbjct: 271 TTIASKPGVDADWTVTVLEQTPDSTGFRLEGPDNRVLVSRVPVPGWFMAANAGLAIVMLV 330

Query: 324 AIGIDSALVLEHLEKLHVVPG----RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             G D   V   L++   +      R E V   + G   +VDY HT ++ E  L+ +R  
Sbjct: 331 ESGYDLDAVAHVLDRDGGIQAYIPGRAERVSGET-GPLFFVDYGHTPDAFEQTLQALRPF 389

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           T G++++VFG  GDRD  KR  MG IA  LAD+ ++TD +PR EDP  IRA +I G    
Sbjct: 390 TPGKLVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRASLIAGAMAA 449

Query: 440 I------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +      E  +   AIRTA+ ++ + D ++VAG GHE  H V  G K      D  R  L
Sbjct: 450 VPDREIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVA-GRKIPFSARDDARAAL 508


>gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
 gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
          Length = 505

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 131/483 (27%), Positives = 214/483 (44%), Gaps = 22/483 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R +  +S DSR +    +F A  G       ++  A+  GA A +   + S  D SA
Sbjct: 29  GPDRPVRGMSIDSRAVGPEALF-ACKGAAFK-PAYLEDALNAGAAAYLCDES-SEPDLSA 85

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
                   LV D+ R  ++  A   YG+  + I  + +TGT GKS+ +  ++ I   +G+
Sbjct: 86  H-AEGVSHLVTDDIRPAMAYAARAAYGRPDKRIDIMGITGTKGKSTTSFLLKSIFAAAGM 144

Query: 143 SSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               IG   T       ++  TTP  + L + +   +  G  H+ +E SSH L   R  G
Sbjct: 145 RPSIIGSIETDDGIDAFESHNTTPEAVDLWRHVFNTAESGRKHLVMEVSSHALKYDRTLG 204

Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + L    F N+GRDHI    H + + YF +K+R+F++       A++  D     EV++ 
Sbjct: 205 LMLDVACFLNIGRDHISPSEHPSFEDYFASKLRIFDQC----RTAVVNLDSDLVDEVLEH 260

Query: 260 AHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           A  A  R+L+ G          + V    +     ++ EG        + G F   NAL 
Sbjct: 261 ARRAE-RLLTFGVDRPEADYSARDVRPCRDGIAFDLACEGGARPMTLGMAGLFNAENALA 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +    GI    +   L  +  VPGR E V + +      VDYAH   S +    ++R
Sbjct: 320 AIAMARIAGIGFEDIASGLAHVR-VPGRMEVVRSAAGSTIALVDYAHNELSYKTFFTSVR 378

Query: 378 -TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
               + +++ VFG  GD+   +R ++ ++A   AD  I T+++P  EDP  I  E+    
Sbjct: 379 KEHLAAKVVAVFGAPGDKAFERREVLPRVAAQFADYLIYTEEDPAHEDPRAIAEELAANT 438

Query: 437 PGFI---EKGNRIEAIRTAIEMLNKQDVLV-VAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           P         +R +AI  A E+  + D +V +  KG ET     +   ++  D  I RE 
Sbjct: 439 PADTPCEIIVDREQAIIRAFEVAGENDAVVCLLAKGDETRQHRGDSFPEVKSDLHIAREC 498

Query: 493 LGL 495
           LG+
Sbjct: 499 LGV 501


>gi|327462062|gb|EGF08391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1057]
          Length = 481

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 124/493 (25%), Positives = 213/493 (43%), Gaps = 36/493 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F +++     F   +     + +S DSR   A  +F  + G       F+ +A+  G  
Sbjct: 16  NFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGETFK-KEFLEKAVTAGLR 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
             +  + + +           P+L+V++ ++ +SL A   YG   + +  LA TGT GK+
Sbjct: 73  FYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A F  QI  +S   +      +T+       + LTTP  + L K ++   + G TH+ 
Sbjct: 124 TTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +         
Sbjct: 184 MEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN----SRAV 239

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I+ +   Y + V ++             +  F        I + Q  +    GK    + 
Sbjct: 240 IVNSGMDYFQIVKEQVA---------SLEHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F   NA+ A   C+ +G     + + +     VPGR E V T   G +++VDYA
Sbjct: 291 IQLIGRFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGAKVFVDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRS 422
           H   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D+P  
Sbjct: 349 HNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNY 408

Query: 423 EDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEK 480
           EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   IV   + 
Sbjct: 409 EDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVEGEKV 468

Query: 481 KMSVDCDIIREIL 493
               D  +  + L
Sbjct: 469 TYPGDYTLAEKYL 481


>gi|198282530|ref|YP_002218851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667953|ref|YP_002424720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247051|gb|ACH82644.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520166|gb|ACK80752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 483

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 141/469 (30%), Positives = 218/469 (46%), Gaps = 17/469 (3%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +D+R ++ G ++V +     DG  F+ QA A GA A ++ S+    D       + 
Sbjct: 24  QGIETDTRRLRPGMLYVGLNTRHGDGQQFLQQAWAAGAAAALLESS----DEDVHGGQDH 79

Query: 91  PILVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           P+      R  L +   R Y         I+ VTGT+GKSSV   + ++  +  +    +
Sbjct: 80  PVWQSPKARTLLGMALRRWYRWDEGLAPVIVGVTGTNGKSSVTRLIAELAPQPAMIIGTL 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G     +        TTP P+ L + ++ L  QG   +++E SSH L   R+  +   A 
Sbjct: 140 GHGRVDA--LISQANTTPDPVPLWQTMATLRDQGAKVIAMEVSSHALALERVAAVPFAAA 197

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+D+H     Y  +K RLF+   P    A++  DDA++ ++   A     R 
Sbjct: 198 VFTNLSRDHLDFHGDMARYGASKTRLFQ--TPGLRLAVLNGDDAFTGQIAA-AMAPEVRQ 254

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L  G          +    +   + +           PL G   V N L A      +G 
Sbjct: 255 LRFGVGSGDYQAVALHPGASGTLLDLRTPAGSRRIRSPLIGNSNVQNLLAALATAEGMGW 314

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                   +  L +  GR++ +       ++ +DYAHT ++L  +L ++R +  G + VV
Sbjct: 315 PV--SDAAIAGLDLPEGRYQRLAPVPGKAQVMIDYAHTPDALRRVLTDLREVAKGAVTVV 372

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGN 444
           FGCGGDRD+GKRP MG+IA  LAD  I+TDDNPRSE PE I  +I+ G+          +
Sbjct: 373 FGCGGDRDRGKRPEMGRIAERLADHVILTDDNPRSEAPEAIADDILGGMEQPGQATVIHD 432

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R  AIR AI      D +++AGKGHE    +    + +  D D+  E L
Sbjct: 433 RAAAIRAAIAASRAGDWVLIAGKGHERTQEIMGQRQPVPQDRDVATEAL 481


>gi|332362287|gb|EGJ40087.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1056]
          Length = 481

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 125/500 (25%), Positives = 217/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  ++   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQNHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+     + + V ++  +        G             I + Q  +    G
Sbjct: 236 ---SRAVIVNNGMDHFQIVKEQVASMEHDFYGAGSSN---------TIIDSQAFSFEAAG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGRYDIQLIGRFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KIFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVTYPGDYTLAEKYL 481


>gi|295094721|emb|CBK83812.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp.
           ART55/1]
          Length = 404

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 129/397 (32%), Positives = 201/397 (50%), Gaps = 26/397 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKAL 174
            ++ VTGT GK++VA  ++ +  R G  +  +G            +  TTP  IYL + L
Sbjct: 2   KVIGVTGTKGKTTVACMIKSMLDRWGRRTGLVGTIEIDDCIRKIPSVNTTPGTIYLHRKL 61

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMR 232
           + + + G  +  +E SS GL   R+ G++     +TNL  DHI    H+T   Y   K  
Sbjct: 62  ADMVANGAEYCVMEVSSQGLMHGRVSGVEFDICVYTNLAPDHIGRNEHRTFAEYGRWKRS 121

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQV 291
           LF     K   A+I ADD YS  +   A NAG  V+  G +         VC      ++
Sbjct: 122 LFS----KCKTAVINADDMYSGCIAAEAVNAGAEVVYYGVRNHTAAGDGNVCMAGAIHRL 177

Query: 292 TIS-----------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +             +G+       +PGEF VYN+L A   C  IGI   ++ +    + 
Sbjct: 178 ILHRVMGIGYECERTDGESTYMTVGIPGEFNVYNSLAAVTTCGIIGIPMEVMQDSQSDMK 237

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR E V       RI++DYAH + SLE +L  +R     R+I +FGCGG+R  G+R 
Sbjct: 238 -VRGRLEPVEIPGY-ARIFIDYAHNAVSLENVLTTLRQYRPKRLICLFGCGGNRSAGRRK 295

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEML 456
            MG ++  LAD+ ++T DNPR E PE I  +I  G+      +++  +R++AIR A+E+ 
Sbjct: 296 GMGFVSGRLADMTVITSDNPRFESPEAIMTDIETGVLEGGGEYVKICSRLDAIRYALEIS 355

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++ D++++AGKGHET   +  G +    + ++IR+IL
Sbjct: 356 DRDDIVLLAGKGHETYQDIE-GRRTQMDEREMIRQIL 391


>gi|227550279|ref|ZP_03980328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|293379063|ref|ZP_06625216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
 gi|227180580|gb|EEI61552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|292642342|gb|EFF60499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
          Length = 501

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + ++     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 202 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLKE 257

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S         D  +   L G F   
Sbjct: 258 TADLFQIPTITYGRSEESNY-QVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQE 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S      L++  V     + + TN  G  +YVDYAH   SL+ +L
Sbjct: 317 NAASAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQTN--GAHVYVDYAHNYLSLKTLL 374

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI  EI
Sbjct: 375 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEI 434

Query: 433 IHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I           +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 435 NEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 494

Query: 489 IREIL 493
           ++ ++
Sbjct: 495 VKRLI 499


>gi|257889005|ref|ZP_05668658.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257897600|ref|ZP_05677253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
 gi|257825068|gb|EEV51991.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257834165|gb|EEV60586.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
          Length = 509

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + ++     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 210 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLKE 265

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S         D  +   L G F   
Sbjct: 266 TADLFQIPTITYGRSEESNY-QVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQE 324

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S      L++  V     + + TN  G  +YVDYAH   SL+ +L
Sbjct: 325 NAASAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQTN--GAHVYVDYAHNYLSLKTLL 382

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI  EI
Sbjct: 383 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEI 442

Query: 433 IHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I           +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 443 NEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 502

Query: 489 IREIL 493
           ++ ++
Sbjct: 503 VKRLI 507


>gi|260905300|ref|ZP_05913622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacterium linens BL2]
          Length = 520

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 143/515 (27%), Positives = 233/515 (45%), Gaps = 43/515 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L+           ER++  VS DSR +  G ++ A+ G    G  F P  + +G  A
Sbjct: 3   ISQLLPAAPGTVHGDPEREVGGVSHDSRTVSPGQLYAALPGANVHGAKFAPDLMERGITA 62

Query: 71  IVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGK 126
           I+  +A      +A      +    L+V++ R  L   ++ +YG      ++ VTGT+GK
Sbjct: 63  ILTDAAGWDMISAAVDPQTLAEVTGLIVEHPRSVLGFVSAAVYGTSVSPQLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    V  + +  G  +  IG  +T I+   + +  TTP    L    + + +  V   
Sbjct: 123 TTTTYLVDGMLEALGHRTGVIGTVATLIAGVREPSVRTTPEAPELHALFAKMRAADVDTC 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH L QHR+DG       FTNL +DH+D+H +   YF+ K +LF         A+
Sbjct: 183 AMEVSSHALSQHRVDGAHFAVSGFTNLSQDHLDFHNSMDEYFDVKAQLFTRTF--SDAAV 240

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---KDFDF 302
           I  +D + +++++ A      V ++G         ++          + + G   +    
Sbjct: 241 IVVEDRWGEKMVEAAQ---VPVRTLGR--DDRSELRIEHTPGVSDFILHLGGSADETIAL 295

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNS-------- 353
             PLPG+F V N  +AA + +  GI  + +          VPGR E +  +         
Sbjct: 296 RSPLPGDFNVTNTALAAAMLLEAGIAVSDLNAIGRTFSASVPGRMEIIDVSGPRAEGQTH 355

Query: 354 --RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             R  R  VDY+HT +++E  L ++   +   +++VFG GGDRD+GKR  MG+ A   AD
Sbjct: 356 PERLPRAIVDYSHTPDAIEKALASLHADSE-ELVIVFGAGGDRDRGKRYGMGQAAARGAD 414

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ------------ 459
           + ++TDDNPR+EDP  IRA I  GI    E  N    ++  IE+  +             
Sbjct: 415 VIVLTDDNPRTEDPNLIRAAIREGIDA--EISNGRARVKKVIEVAERGSAIDEAIAAAEA 472

Query: 460 -DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +++AGKGHET      G      D    R  L
Sbjct: 473 STTVLIAGKGHETGQS-AGGVVTDFDDRSRTRSAL 506


>gi|34558000|ref|NP_907815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolinella succinogenes DSM 1740]
 gi|46576897|sp|Q7M8F9|MURE_WOLSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34483718|emb|CAE10715.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATELIGASE
           [Wolinella succinogenes]
          Length = 434

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 123/474 (25%), Positives = 211/474 (44%), Gaps = 58/474 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +S DSR       F+    ++     +   A  +G +  +       +D    +++
Sbjct: 9   EVEFISDDSRECTPKSAFLLTQSSRV----YEAAAREKGCKLFL-----EPKDLHRFLKT 59

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P++ V                         TGT+GK++ ++ +  I    G     +G
Sbjct: 60  DIPLIGV-------------------------TGTNGKTTTSAAIYSILLDLGYKVALLG 94

Query: 149 PTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 +    +   LTTP  + L + +      G     +E SSH +DQ R++G+    
Sbjct: 95  TRGFFMNDELIEPKGLTTPPLLELYERIDRAKRAGCDFFVMEVSSHAIDQKRIEGLNFAL 154

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+DYH++ + Y   K   F++  PK    +I  D++ +K  ++ A      
Sbjct: 155 KILTNITSDHLDYHKSLEHYIQTKNSFFDDSTPK----LINKDESKAKFNLQNA------ 204

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI- 325
            LS G +    +  K  ++H   +  I+   K+      L G+  +YN L A      + 
Sbjct: 205 -LSYGIEHPSSYHVKAYSLHGGIEARIAFLEKEASLSSSLFGKHNLYNLLAAVSAVHRLI 263

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G +   + +  E+   V GR E V        + VD+AHT + +  I +   +     I+
Sbjct: 264 GGELQEICDMAERFGGVEGRMERVSEE---PLVVVDFAHTEDGMRQIFE---SFPHQEIV 317

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
           V+FG GGDRD+ KRP MG +A   A    +T DNPRSEDP  I  EI  GI      +++
Sbjct: 318 VLFGAGGDRDRSKRPKMGAVADRYAKRIYLTSDNPRSEDPLLIIEEIEKGIHHCQKCVKE 377

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +R++AIR A++ L  Q+VL++ GKG E   I+ + +  M  D + +   LG I
Sbjct: 378 PDRVQAIRRAVKELEAQEVLLILGKGDEAEQIIGSQKIPMK-DRETVLSALGEI 430


>gi|262276876|ref|ZP_06054669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
 gi|262223979|gb|EEY74438.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
          Length = 460

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 140/494 (28%), Positives = 246/494 (49%), Gaps = 37/494 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++++I ++F                       +DSR ++   +F   + N +  + F+
Sbjct: 1   MKIKEIINRNF----------------------CTDSRLLKRNDVFFDFLSNSKKINPFL 38

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              I +    I  S   + ++           ++  N R        + Y K P+NI AV
Sbjct: 39  KSIIKKKPSLIFSSIKVNYRNS----------VISKNIRNLYLSLIKKKYKKIPKNIFAV 88

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVA+F  Q+   +      IG      +  +     TTPS + +   L++++ 
Sbjct: 89  TGTNGKTSVANFFYQLHILNKKPCANIGTLGYFYNKKRKKNNLTTPSNLDIYNFLNFINK 148

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + +  V +EASSHGLDQ RL+G+K     FTN  +DH+DYH++ +AY N+K++LF + L 
Sbjct: 149 KKIRTVILEASSHGLDQDRLNGLKFKGVVFTNFSQDHLDYHKSMKAYLNSKLKLFRQNLK 208

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   +   +        K +  +   VL    +   + +  V   ++K  + ++ +   
Sbjct: 209 KKGNIVCNDNIKKILIKNKISKISFKYVLDNKIKYP-VKIINVKKNNSKTLIKLNFKNNI 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           + F   L G+FQ+ N   +  L ++ G+    + + LEK+  + GR   +    +   I 
Sbjct: 268 YTFNINLIGQFQIENLYQSIILALSSGLKIKEIFKVLEKVKPIEGRLNIIKNKKK--TIC 325

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAHT + L+ +L+ ++   + ++ +VFGCGG+RD  KR  MG+IA  L +  I+T+DN
Sbjct: 326 IDYAHTPDGLKKVLETLKNHYNKKVNIVFGCGGNRDTDKRKKMGQIANKLCNKVILTNDN 385

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PR EDP+ I  +I   +       NR  AI+ AI++  +++VL++AGKGHE   I  N  
Sbjct: 386 PREEDPKNITKQIFKSVKKAEVIHNRKLAIKKAIKITKEKEVLLIAGKGHENYQIFKN-R 444

Query: 480 KKMSVDCDIIREIL 493
                D D+ ++ L
Sbjct: 445 IIYFSDFDVAKKNL 458


>gi|118472293|ref|YP_888509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118173580|gb|ABK74476.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 520

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 159/475 (33%), Positives = 228/475 (48%), Gaps = 18/475 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+   +  Q G +F A+ G    G  F   A+A GA A++   + +          +
Sbjct: 42  VTGVTLRGQDAQPGDLFAALPGASAHGARFAADAVAAGAVAVLTDPSGADLLAGTL---D 98

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LV    R  L   A+ +YG+  E +  + VTGTSGK++     +   + +G  +  I
Sbjct: 99  VPVLVHPAPRSVLGEAAAIVYGRPAERLRVVGVTGTSGKTTTTYLAEAGLRAAGRVAGLI 158

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I      + LTTP    L   L+ +  +GV  V +E SSH L Q R+DGI    
Sbjct: 159 GTVGVRIDGTDLPSALTTPEAPALQALLALMVERGVDTVVMEVSSHALAQGRVDGIGFAV 218

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGC 265
           G FTNL RDH+D+H T   YF AK RLF+   P   + A+I  DD Y  ++  RA     
Sbjct: 219 GGFTNLSRDHLDFHPTMADYFEAKARLFDPQSPNHAAAAVICVDDQYGVQMAARAETP-L 277

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            V + G    +   K   A    Q+  +    G        LPG + V NA +A  L  A
Sbjct: 278 TVSTSGAAADWRVEKITTAGPGAQEFVLVDPGGMHHQLGVGLPGRYNVANAALAVALLDA 337

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+        L     VPGR E +    +     VDYAH   +L+ +L+ +R     RI
Sbjct: 338 VGVSPEQAAPGLRT-ATVPGRLESIDL-GQDFLALVDYAHKPGALQAVLETLRAAEPRRI 395

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PG 438
            VVFG GGDRD GKR  MG++  +LAD+ +VTDDNPRSEDP  IR+ I+ G         
Sbjct: 396 AVVFGAGGDRDPGKREPMGRVTAELADLVVVTDDNPRSEDPATIRSAILAGARAVASDAE 455

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +E G+R  AI  A+      D++++AGKGHE+   V +  +    D D +   L
Sbjct: 456 IVEIGDRRAAIDHAVAWAQPGDIVLIAGKGHESGQTVGDHTRP-FDDRDELAAAL 509


>gi|325696310|gb|EGD38201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK160]
          Length = 481

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/500 (25%), Positives = 216/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKKDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDH- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +   + + V ++  +        G             I + Q  +    G
Sbjct: 236 ---SRAVIVNSGMDHFQIVKEQVASMEHDFYGAGSSN---------TITDSQAFSFEAAG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGHYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAT-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KIFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVTYPGDYTLAEKYL 481


>gi|323126663|gb|ADX23960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 436

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 198/457 (43%), Gaps = 35/457 (7%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           F A  G       ++ +AIA+G    V    Y L         + P+++V + +K +SL 
Sbjct: 6   FFA-KGATFK-AEYLKEAIAKGLPLYVSEVDYKL---------DIPVVLVTDIKKAMSLI 54

Query: 106 ASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRL 162
           A   Y    +   +L  TGT GK++ A F   I + S   +      +T+       ++L
Sbjct: 55  AMAFYDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNTTLDGQTFFKSQL 114

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YH 220
           TTP  + L   ++     G+TH+ +E SS      R+ G+    G F N+  DHI    H
Sbjct: 115 TTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEH 174

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T + YF  K  L E         +I +   +   +  +  N          +  F    
Sbjct: 175 PTFEDYFYHKRLLMEN----SRAVVINSGMDHFPFLANQVANQ---------EHAFYGAL 221

Query: 281 KVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               I   Q  +    G+    +   L G F   NA+ A   C+ +G   A + + + K 
Sbjct: 222 SDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK- 280

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VPGR E +   +   +++VDYAH  +SLE +L  +    +G ++++ G  G++ + +R
Sbjct: 281 TRVPGRMEVLTMTNH-AKVFVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRR 339

Query: 400 PIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN 457
              G +     ++  I+T D+P  EDPE I  EI   I   I+   +R +AI+ A+ +  
Sbjct: 340 ADFGAVINQHPNLTVILTADDPNFEDPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQ 399

Query: 458 -KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +D +++AGKG +   IV   +   + D  + +  L
Sbjct: 400 GPEDAVIIAGKGADAYQIVKGEKAPYAGDLAVAQRYL 436


>gi|257880464|ref|ZP_05660117.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257891505|ref|ZP_05671158.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257894552|ref|ZP_05674205.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260562463|ref|ZP_05832973.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
 gi|257814692|gb|EEV43450.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257827865|gb|EEV54491.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257830931|gb|EEV57538.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260073148|gb|EEW61493.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
          Length = 509

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/485 (25%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 210 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLRE 265

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S                L G F   
Sbjct: 266 TADLFQIPTITYGRSEESNY-QVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQE 324

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S    + L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 325 NAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 382

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           K        GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI
Sbjct: 383 KFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEI 442

Query: 433 IHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I         + +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 443 NEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 502

Query: 489 IREIL 493
           ++ ++
Sbjct: 503 VKRLI 507


>gi|152967148|ref|YP_001362932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151361665|gb|ABS04668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 537

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 161/477 (33%), Positives = 241/477 (50%), Gaps = 19/477 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR ++ G ++ A+ G    G  F  QA A GA A +   A +         + 
Sbjct: 43  VTGVTLDSRRVRPGDLYAALPGANVHGARFAAQAAASGAVAALTDPAGA----DLVAAAG 98

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P LVVD+ R  L   A+R++G+  + +  + VTGT+GK++ A  V+ + + +G ++  +
Sbjct: 99  LPALVVDDPRAVLGDLAARIHGRPGDVLTTVGVTGTNGKTTTAYLVESLLRSAGWTTGLL 158

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T I+    D+  TTP    L   L+ + + GV   ++E SSH L QHR+DG+ L  
Sbjct: 159 GTVETRIAGERVDSVRTTPEAPDLHALLARMVAAGVRGCALEVSSHALVQHRVDGLVLDV 218

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGC 265
             FTNL +DH+D+H + + YF AK  LF     +     +  D A      +R A  A  
Sbjct: 219 ALFTNLSQDHLDFHGSMEEYFAAKASLFTPAHARRGVVWVEEDGAPDASWGRRLARRASV 278

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGK--DFDFLFPLPGEFQVYNALVAAGL 321
            V++VG       +  V          +S  + G   + D   PLPG+F V NA +AA  
Sbjct: 279 PVVTVGAGDADWRVTDVRTGRAGSTFHLSGTLPGGPVELDLTCPLPGDFNVANAALAAVA 338

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +G   A+V   L     VPGR + V        + VDYAHT ++L+ +L+ +R IT 
Sbjct: 339 VLHLGPAPAVVAAGLAAAEGVPGRMQTV-VRDGAPLVVVDYAHTPDALDRVLRTLRGITP 397

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII----HGIP 437
           GR++ VFG GGDRD+GKRP+MG     LAD+A+VTDDNPRSED   +RA ++     G  
Sbjct: 398 GRLVAVFGAGGDRDRGKRPLMGAAVAALADVAVVTDDNPRSEDAAAVRAAVLAGARSGPA 457

Query: 438 GFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +E  +R  A+  A+       D +++AGKGHET      G      D       L
Sbjct: 458 EVLEVADRAAALDAALARCRGAGDTVLLAGKGHETGQE-AAGVVTPFDDRAAAAHAL 513


>gi|144897243|emb|CAM74107.1| UDP-N-acetylmuramyl-tripeptide synthetase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 343

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 154/330 (46%), Positives = 201/330 (60%), Gaps = 4/330 (1%)

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P P  L +AL+ L+   +TH ++EASSHGLDQ RLDG+KL A  FTNL RDH+DYH   Q
Sbjct: 15  PDPADLHEALAELAENSITHAAMEASSHGLDQFRLDGVKLQAAGFTNLTRDHLDYHGDMQ 74

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           AY  AK+RLF +LLP++  A+I AD   + +V + A +   RVL  G  G  + LK +  
Sbjct: 75  AYLAAKLRLFTDLLPEDGVAVINADCPVAAQVAQAAGSR--RVLRFGRAGAELALKDIRP 132

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             + Q + + V G       PL G FQ  NAL A GL I  G ++   +  LE L  +PG
Sbjct: 133 DSHGQVLDLDVLGHSATIRLPLAGTFQAANALAALGLVIGCGGNALAAINALESLTEIPG 192

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + V  +     I+VDYAHT ++LE +L  +    +GR++VVFGCGGDRD GKRP MG+
Sbjct: 193 RLQKVA-DKDSAPIFVDYAHTPDALETVLTALLPHATGRLLVVFGCGGDRDPGKRPQMGE 251

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           IA  LADI +VTDDNPRSEDP  IRA I+    G +E  +R  AIR A+ +L + DVLVV
Sbjct: 252 IAARLADIVLVTDDNPRSEDPALIRAAIMTAAKGAMEIADRRTAIRHAVSLLRQGDVLVV 311

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           AGKGHE+  IV         D +  R+  G
Sbjct: 312 AGKGHESGQIVGAHTLP-FDDAEECRQAAG 340


>gi|69244104|ref|ZP_00602640.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|258614113|ref|ZP_05711883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium DO]
 gi|293563966|ref|ZP_06678373.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|314940304|ref|ZP_07847471.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|314941860|ref|ZP_07848731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|314949519|ref|ZP_07852854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
 gi|314952899|ref|ZP_07855867.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|314994520|ref|ZP_07859793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|314995273|ref|ZP_07860385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|68196561|gb|EAN10987.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|291604056|gb|EFF33583.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|313590529|gb|EFR69374.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|313591098|gb|EFR69943.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|313595021|gb|EFR73866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|313599344|gb|EFR78189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|313640480|gb|EFS05060.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|313644133|gb|EFS08713.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
          Length = 501

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/485 (25%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 202 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLRE 257

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S                L G F   
Sbjct: 258 TADLFQIPTITYGRSEESNY-QVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQE 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S    + L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 317 NAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 374

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           K        GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI
Sbjct: 375 KFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEI 434

Query: 433 IHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I         + +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 435 NEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 494

Query: 489 IREIL 493
           ++ ++
Sbjct: 495 VKRLI 499


>gi|327490129|gb|EGF21917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1058]
 gi|332367212|gb|EGJ44947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1059]
          Length = 481

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 218/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   NILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  Q   +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQTLSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NNRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +D  + + V ++  +        G             I + Q  +  V G
Sbjct: 236 ---SRAVIVNSDMDHFQIVKEQVASMEHDFYGAGSSN---------TIIDSQAFSFEVAG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGRYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KVFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   +     D  +  + L
Sbjct: 462 IIEGEKVTYPGDNALAEKYL 481


>gi|257883276|ref|ZP_05662929.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
 gi|257818934|gb|EEV46262.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
          Length = 509

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 210 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLRE 265

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S                L G F   
Sbjct: 266 TADLFQIPTITYGRSEESNY-QVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQE 324

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S    + L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 325 NAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 382

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI
Sbjct: 383 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEI 442

Query: 433 IHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I         + +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 443 NEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 502

Query: 489 IREIL 493
           ++ ++
Sbjct: 503 VKRLI 507


>gi|237752986|ref|ZP_04583466.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375253|gb|EEO25344.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 446

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 128/488 (26%), Positives = 207/488 (42%), Gaps = 67/488 (13%)

Query: 24  QWRERKINEVSSDSRHI------QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
            +    I  +S DSR +           F+    NK     ++  A   G E  +     
Sbjct: 8   NFSNSHIRFISDDSREVLSNECNAKNCAFLITKSNK----CYLKNAKENGFEIFITPQ-- 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                              + ++FL L            I+A+TGT+GK++ A+ +  I 
Sbjct: 62  -------------------DLKQFLDL---------NLKIIAITGTNGKTTTAAMIYSIL 93

Query: 138 QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              G     +G           ++  LTTPS + +  A++    +  T+  +E SSH + 
Sbjct: 94  LDLGYKVALLGTRGFFINGVKKREKGLTTPSLLEIYSAITEARKENCTYFVMEVSSHAIV 153

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R++G++      TN+  DH+DYH+T + Y   K   F   L      +I  D+  ++ 
Sbjct: 154 QERIEGLEFTLKILTNITSDHLDYHKTLENYIATKNSFF---LSPLDLKLINKDEPNARY 210

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +++A       ++ G +       +  ++ +     I+   ++      L G+  +YNA
Sbjct: 211 ALQKA-------ITYGIESPATFQVRAYSLKDGITAQIAYGKEESSLQCSLFGKHNLYNA 263

Query: 316 LVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           L A      +       + E LE    V GR + V   S+   I VD+AHT + +E I +
Sbjct: 264 LAAISAVKLLENEPLQEICEKLENFGGVLGRMQVV---SQNPLIIVDFAHTEDGMEKIFQ 320

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
              +    +I VVFG GGDRD+ KRP MG  A   A    +T DNPRSE P  I  EI +
Sbjct: 321 ---SFPHRKIAVVFGAGGDRDKTKRPKMGLCAAKYAQKIYITSDNPRSEIPSAIIQEIFN 377

Query: 435 GIPGFIE-------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           GIP  +        + NR +AI  AI  L   +VL++ GKG ET  I+ +       D +
Sbjct: 378 GIPQTLREKLEIYLEENRAKAINMAISALKSDEVLLILGKGDETYQIIGDSTLH-FDDTE 436

Query: 488 IIREILGL 495
             ++ L L
Sbjct: 437 EAQKALAL 444


>gi|293568181|ref|ZP_06679515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|294619967|ref|ZP_06699339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|294622174|ref|ZP_06701242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
 gi|291589081|gb|EFF20895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|291593797|gb|EFF25299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|291598301|gb|EFF29392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
          Length = 501

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 202 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLRE 257

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S                L G F   
Sbjct: 258 TADLFQIPTITYGRSEESNY-QVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQE 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S    + L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 317 NAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 374

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI
Sbjct: 375 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEI 434

Query: 433 IHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I         + +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 435 NEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 494

Query: 489 IREIL 493
           ++ ++
Sbjct: 495 VKRLI 499


>gi|331701599|ref|YP_004398558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329128942|gb|AEB73495.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 511

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 121/496 (24%), Positives = 206/496 (41%), Gaps = 48/496 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
              +++S +S+ +    +F    GN +    ++  A   GA A +    Y          
Sbjct: 29  HPFDQISYNSKSVTDNCLFFC-KGNFK--SAYLDDARQNGATAYMSEKTYQ--------N 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC-QRSGLSS 144
           +  P ++V N +K +SL ++  +G   + +  +A TGT GK++ A F + I  Q      
Sbjct: 78  AGIPGIIVKNIQKAMSLVSAAFFGFPQDQLPTIAYTGTKGKTTSAYFTKAILDQTYQRKV 137

Query: 145 FQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                 +T+     ++     LTTP  + L   +   +  G++H+ +E SS    ++R+ 
Sbjct: 138 ALSSTINTVVGLKPEDVVKSNLTTPESLDLFTMMRKAADNGMSHLVMEVSSQAYKKNRVY 197

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-- 256
           G+    G F N+  DHI    H T   Y + K    E+LL      ++ AD  +  ++  
Sbjct: 198 GLHYDVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSDVCVLNADGTHLTDIFY 253

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLK----------KVCAIHNKQQVTISVE-----GKDFD 301
             +A      +   G  G+    +          K     N+ QVT           D  
Sbjct: 254 AAKATTQPENIFIYGRAGQNQETEFPVDVEYRSLKDSLTENQIQVTARTAKAKQLNIDGV 313

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   +PG++   NA+ AA     +G     +   L     VPGR E   T+  G  +YVD
Sbjct: 314 YRIGIPGDYNEGNAVAAAITSALMGAKPTEIAYGLAN-TTVPGRMEIYQTHDHG-TVYVD 371

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   SL  +L  ++       + V      D+   +R  +GK   + AD A +T D+P
Sbjct: 372 YAHNYGSLHSVLDFLKKQAPNGKVTVITGSTGDKGIDRREGLGKAINEAADQAYLTTDDP 431

Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            +EDP++I  EI   I           +R +AI  A+    K D++VVAGKGH+    + 
Sbjct: 432 ATEDPQQIAKEIAAHIDTSKVATTYIPDRKQAITKAVSESQKGDLVVVAGKGHDQYQKIN 491

Query: 477 NGEKKMSVDCDIIREI 492
                   D  I++ +
Sbjct: 492 GKNVPYEGDAAIVKNL 507


>gi|324993698|gb|EGC25617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK405]
 gi|324994989|gb|EGC26902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK678]
 gi|327462968|gb|EGF09289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1]
 gi|327474571|gb|EGF19976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK408]
          Length = 481

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 124/500 (24%), Positives = 219/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   NILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  Q   +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQTLSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NNRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +D  + + V ++  +        G             I + Q  +  V G
Sbjct: 236 ---SRAVIVNSDMDHFQIVKEQVASMEHDFYGAGSSN---------TIIDSQAFSFEVAG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGRYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KVFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   +   S D  +  + L
Sbjct: 462 IIEGEKVAYSGDYALAEKYL 481


>gi|323351057|ref|ZP_08086714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
 gi|322122781|gb|EFX94490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
          Length = 481

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 126/500 (25%), Positives = 217/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL     YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLVMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +   Y + V ++             +  F        I + Q  +    G
Sbjct: 236 ---SRAVIVNSGMDYFQIVKEQVA---------SLEHDFYGAGSNNTIKDSQAFSFEAAG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGHYDIQLIGRFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH   SL  +L  +     G+II++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KIFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVAYPGDYALAEKYL 481


>gi|313144193|ref|ZP_07806386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
 gi|313129224|gb|EFR46841.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 464

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 124/448 (27%), Positives = 201/448 (44%), Gaps = 37/448 (8%)

Query: 63  AIAQGAE---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           A+  G     A++V S  ++    +       I   D  +  L        G++P  I+ 
Sbjct: 33  ALENGVVKEEALLVRSKQNMAFIPSDFPQENLIESCDLGKVLLDSI----PGENP-RIVG 87

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177
           +TGT+GK++ A+ +  +    G     +G        S  +   LTTPS + L + LS+ 
Sbjct: 88  ITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFA 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G  +  +E SSH + Q R+ G+       TN+  DH+DYH++ + Y   K   FEE 
Sbjct: 148 KAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFEE- 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +I AD+ Y++    +       V   G + K        A+ +     I+   
Sbjct: 207 ---RGLKLINADEKYAQ---CQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDAHIAWRD 260

Query: 298 ------KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
                 +       L G+  +YNAL        +       + + +E    V GR E V 
Sbjct: 261 NKECSQESCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVVH 320

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + ++ I ++ R     +I VVFG GGDRD+ KRP MG  A + A
Sbjct: 321 ---HKPLVIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGDRDKSKRPKMGACAFEYA 374

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D   +T DNPRSEDP +I  +I  G+P        + + +R +AI  A+  L + +VL++
Sbjct: 375 DKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQALNELQENEVLLI 434

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
            GKG E   I+ N  K    D +++RE 
Sbjct: 435 LGKGDEDCQIIGNN-KIYFDDREVVREY 461


>gi|239813921|ref|YP_002942831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Variovorax paradoxus S110]
 gi|239800498|gb|ACS17565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           S110]
          Length = 520

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 148/515 (28%), Positives = 223/515 (43%), Gaps = 59/515 (11%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           W + ++   + +DSR + AG  F+A  G   DG   +  A+AQGA A +V    +     
Sbjct: 13  WLKERVQGALHADSRPVGAGDGFIAWPGAATDGRRHVASALAQGAAACLVEQQGAEAFG- 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
                +  I      +      AS  Y        +LAVTGT+GK+S A ++ +      
Sbjct: 72  --FDGDERIASYPGLKAATGPIASAFYDNPSAALEVLAVTGTNGKTSTAWWLAESLSTLA 129

Query: 142 LSSF----------------QIGPTSTISSFAQDNRLTT----PSPIYLAKALSYLSSQG 181
           +                         T+        + T    P P+ + + L  L  +G
Sbjct: 130 VPGGVRAPRLDGSAERGVPSPCAVMGTLGIGVPPELVYTGLTTPDPVMMQRELRALVERG 189

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
               ++EASS G+ + RLD  ++    FTN  +DH+DYH +  AY+ AK  LF    P  
Sbjct: 190 FGACAIEASSIGIAERRLDSARIAVAVFTNFTQDHLDYHGSMDAYWQAKAELFR--WPGL 247

Query: 242 SPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             A+I  DD +   +   +  A      V +V   G    L      ++ Q +  SV   
Sbjct: 248 RAAVINIDDVHGASLCANLLEAGIGALDVWTVSAAGAPARLMARDVGYDAQGLRFSVAEH 307

Query: 299 DFD----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---T 351
           D D        L G++ V N L   G   A+G+  A  +    +L  VPGR E VG    
Sbjct: 308 DNDAVERMSTGLIGQYNVANLLGVLGTLRALGLSLAQAVAACSRLTSVPGRMERVGAADA 367

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           N+      VDYAHT ++L+  L  +R +     G +  VFGCGGDRD  KRP+M  +A  
Sbjct: 368 NAAAPLAVVDYAHTPDALDKALAGLRPLAQQRGGALWCVFGCGGDRDPIKRPMMAAVAER 427

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR----------TAIEMLNK 458
            AD  +VT DNPRSE+P+ I ++++ G+        R EA +           AI     
Sbjct: 428 QADRVVVTSDNPRSENPDAIISQVLLGLA-------RPEAAQVQPDRAAAIADAIAQAAP 480

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           QDV+++AGKGHE    +  G++    D     + L
Sbjct: 481 QDVVLLAGKGHEAWQEIA-GQRIPFSDRIHALDAL 514


>gi|325687075|gb|EGD29098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK72]
          Length = 481

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 124/500 (24%), Positives = 217/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLELIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +   + + V ++             +  F        I + Q  +    G
Sbjct: 236 ---SRAVIVNSGMDHFQIVKEQVA---------SLEHDFYGADSSNTIKDSQAFSFEATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K   ++   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGNYDIQLIGRFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KVFVDYAHNGVSLRNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVAYPGDYALAEKYL 481


>gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 540

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 126/537 (23%), Positives = 207/537 (38%), Gaps = 58/537 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  K     +   S+         ++ ++ DSR ++ G +F A+ G    G  +I  AI 
Sbjct: 2   LYRKPITVCLASCSVQETHGSACDVSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAID 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
            GA AIV            T         V + R  LS  A+  Y        ++ VTGT
Sbjct: 62  AGACAIVHDCPLD------TYVVGVYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GKSS  SF+ Q+ +  G     I                  TTP  + + + L+ +   
Sbjct: 116 EGKSSTVSFIAQLLRLCGKRVGFISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREH 175

Query: 181 GVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 +EASSHGL     RL  +        N+  +H+++H + + Y   K  +F  L 
Sbjct: 176 SCEFAVIEASSHGLSTRTARLQDVAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALD 235

Query: 239 PKE---------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-- 287
             +         S  +++A+DA S    + A +  C     G   +      +  +    
Sbjct: 236 AHDHIKDGRRVPSFGVLWAEDA-SAVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTL 294

Query: 288 ---------KQQVTISV------------EGKDFDFLFPLPGEFQVYNALVAAGLCIA-I 325
                     Q + +              +    D   PL G F   N   +  +    +
Sbjct: 295 LWVQTLPQISQALRLRFVLSTVQEPAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGLL 354

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI---LKNIRTITSG 382
           G   A   +H++ +  + GR + V    +   + +DYAHT +S E I   L         
Sbjct: 355 GTSLAAFAQHVQYVQPIQGRMQRVDM-GQDFEVLIDYAHTPSSFEEILPPLAARVRARKR 413

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------ 436
           R++V+FG  G+RD  KR + G IA   A + ++TD++PR EDP  I   I  G       
Sbjct: 414 RMLVLFGSAGERDTQKRAMQGAIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLG 473

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  +R+ A+R    +   QD++++ GKGHE   I+     +   +    RE+L
Sbjct: 474 KTLFLIPDRVAALRHIFSLARAQDLVLLLGKGHEHS-IIYAHTVQPYDEERTARELL 529


>gi|293572002|ref|ZP_06683015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
 gi|291607926|gb|EFF37235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
          Length = 501

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 120/485 (24%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + ++     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVKNGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 202 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLKE 257

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S         D  +   L G F   
Sbjct: 258 TADLFQIPTITYGRSEESNY-QVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQE 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S      L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 317 NAASAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 374

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI  EI
Sbjct: 375 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEI 434

Query: 433 IHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I           +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 435 NEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 494

Query: 489 IREIL 493
           ++ ++
Sbjct: 495 VKRLI 499


>gi|257083598|ref|ZP_05577959.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
 gi|256991628|gb|EEU78930.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
          Length = 508

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 124/508 (24%), Positives = 213/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I   I      +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEIPVYTILDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|294614320|ref|ZP_06694237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
 gi|291592792|gb|EFF24384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
          Length = 501

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 202 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLRE 257

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S                L G F   
Sbjct: 258 TADLFQIPTITYGRSEESNY-QVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQE 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S    + L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 317 NAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 374

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI
Sbjct: 375 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEI 434

Query: 433 IHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I         + +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 435 NEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 494

Query: 489 IREIL 493
           ++ ++
Sbjct: 495 VKRLI 499


>gi|257886353|ref|ZP_05666006.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|261207201|ref|ZP_05921890.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
 gi|257822209|gb|EEV49339.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|260078829|gb|EEW66531.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
          Length = 509

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 210 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLRE 265

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S                L G F   
Sbjct: 266 TADLFQIPTITYGRSEESNY-QVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQE 324

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S    + L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 325 NAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 382

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI
Sbjct: 383 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEI 442

Query: 433 IHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I         + +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 443 NEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 502

Query: 489 IREIL 493
           ++ ++
Sbjct: 503 VKRLI 507


>gi|315031426|gb|EFT43358.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0017]
          Length = 516

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|257418283|ref|ZP_05595277.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
 gi|257160111|gb|EEU90071.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
          Length = 508

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 125/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR I A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDITAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  S D  +    + 
Sbjct: 478 KGADLYQKVNGVDEPYSGDFALAEAFIN 505


>gi|224437747|ref|ZP_03658694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 455

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 124/448 (27%), Positives = 201/448 (44%), Gaps = 37/448 (8%)

Query: 63  AIAQGAE---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           A+  G     A++V S  ++    +       I   D  +  L        G++P  I+ 
Sbjct: 24  ALENGVVKEEALLVRSKQNMAFIPSDFPQENLIESCDLGKVLLDSI----PGENP-RIVG 78

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177
           +TGT+GK++ A+ +  +    G     +G        S  +   LTTPS + L + LS+ 
Sbjct: 79  ITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFA 138

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G  +  +E SSH + Q R+ G+       TN+  DH+DYH++ + Y   K   FEE 
Sbjct: 139 KAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFEE- 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +I AD+ Y++    +       V   G + K        A+ +     I+   
Sbjct: 198 ---RGLKLINADEKYAQ---CQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDAHIAWRD 251

Query: 298 ------KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
                 +       L G+  +YNAL        +       + + +E    V GR E V 
Sbjct: 252 NKECSQESCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVVH 311

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + ++ I ++ R     +I VVFG GGDRD+ KRP MG  A + A
Sbjct: 312 ---HKPLVIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGDRDKSKRPKMGACAFEYA 365

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D   +T DNPRSEDP +I  +I  G+P        + + +R +AI  A+  L + +VL++
Sbjct: 366 DKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQALNELQENEVLLI 425

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
            GKG E   I+ N  K    D +++RE 
Sbjct: 426 LGKGDEDCQIIGNN-KIYFDDREVVREY 452


>gi|315146886|gb|EFT90902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4244]
          Length = 516

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|324991345|gb|EGC23278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK353]
          Length = 481

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 125/500 (25%), Positives = 217/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
            G TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +   + + V ++  +        G             I + Q  +    G
Sbjct: 236 ---SRAVIVNSGMNHFQIVNEQVASMEHDFYGTGSNN---------TIIDSQAFSFEAAG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGHYDIQLIGRFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KIFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   ++   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVTYPGDYALAEKYL 481


>gi|315025677|gb|EFT37609.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2137]
 gi|315153888|gb|EFT97904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0031]
 gi|315156686|gb|EFU00703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0043]
          Length = 516

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|307270255|ref|ZP_07551567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
 gi|306513398|gb|EFM82018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
          Length = 511

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 214/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAKMII 509


>gi|257086023|ref|ZP_05580384.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257420926|ref|ZP_05597916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
 gi|256994053|gb|EEU81355.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257162750|gb|EEU92710.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
          Length = 508

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|229548608|ref|ZP_04437333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|312953043|ref|ZP_07771896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|229306239|gb|EEN72235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|310629072|gb|EFQ12355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|327534252|gb|AEA93086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis OG1RF]
          Length = 513

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|257900334|ref|ZP_05679987.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
 gi|257838246|gb|EEV63320.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
          Length = 509

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + ++     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 210 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLKE 265

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVY 313
            A       ++ G   K  + + + +       T+S         D  +   L G F   
Sbjct: 266 TADLFQIPTITYGRSEKSNY-QVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQE 324

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S      L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 325 NAASAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 382

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI  EI
Sbjct: 383 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEI 442

Query: 433 IHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I           +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 443 NEAITNPELIVHYEMDRPEAIRRALAESTSQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 502

Query: 489 IREIL 493
           ++ ++
Sbjct: 503 VKRLI 507


>gi|305432459|ref|ZP_07401621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
 gi|304444498|gb|EFM37149.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
          Length = 427

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 123/442 (27%), Positives = 196/442 (44%), Gaps = 55/442 (12%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F   A+ +GA+ I V     L      I                              I
Sbjct: 31  NFASDALEKGAKIIDVEECKKLLKIDENI-----------------------------KI 61

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA--KALS 175
           + +TGT+GK++ A+ +  I    G      G      +  Q +  +  +   L   + L 
Sbjct: 62  IGITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQ 121

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             + +      +E SSH L Q+R++G+K  A  FTN+ +DH+D+H   + Y  AK   F 
Sbjct: 122 LATQKKCDFFIMEVSSHALVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFFT 181

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +    ES   I  D    K  ++ A        + G +   ++  K  ++ +     +++
Sbjct: 182 D----ESLKFINKDTLMIKFNVRNA-------FTYGIENPSLYQVKAYSLEDGISAIVAL 230

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSR 354
           + + F    PL G F +YN L A+     +       + + +     V GR E V     
Sbjct: 231 KDQSFHIDSPLLGLFNLYNLLAASACVNELVKPNLKDLEKAISGFGGVCGRVEQVANG-- 288

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A IAI
Sbjct: 289 ---VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAI 342

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPRSE+P+ I  EI+ G       +   +R EAI  A+++  K D++V+ GKG E 
Sbjct: 343 ITSDNPRSEEPKDIMNEILSGFQNPDKALMIEDRKEAINKALKLKEKDDLVVILGKGDEN 402

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    D  I+ EIL
Sbjct: 403 TQEIK-GIKHPFSDKAIVNEIL 423


>gi|307277046|ref|ZP_07558152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|312904314|ref|ZP_07763476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|306506290|gb|EFM75454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|310632410|gb|EFQ15693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|315030594|gb|EFT42526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4000]
 gi|315159715|gb|EFU03732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0312]
 gi|315162688|gb|EFU06705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0645]
 gi|315578755|gb|EFU90946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0630]
          Length = 514

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 213/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAKMII 512


>gi|254468468|ref|ZP_05081874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           1 [beta proteobacterium KB13]
 gi|207087278|gb|EDZ64561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           1 [beta proteobacterium KB13]
          Length = 423

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 200/385 (51%), Gaps = 17/385 (4%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +  VTGT+GK+S A ++  +  +    S  IG      S  +    TTP    L    +
Sbjct: 47  KLYGVTGTNGKTSTAFWLNHLLSKLEKPSKLIGTI----SKDKVVINTTPDLFVLYSLFN 102

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + + +  +E SSHG+DQ R+  +    G FTNL RDH+DYH+T   YF +K R F 
Sbjct: 103 KGIQKNIKNFVLEVSSHGVDQGRIHELNFEYGIFTNLSRDHLDYHKTMNNYFLSKERFFI 162

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQV 291
           E + KES   I  D++Y   +         ++ + G+  +      ++K+    +   + 
Sbjct: 163 ENVKKESV--INIDNSYGMRLANNLIKLNKKIFTFGFSKEANVKIINIKQQFLTNKYSEF 220

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++ +  K   F   + GEF +YN + A  +C    ID   V E +++L V  GR   +  
Sbjct: 221 SLQIANKIHTFKTNVIGEFNLYNLISAICICYLKKIDIHKVTEVIKRLPVPDGRMNVINK 280

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  ++ +DYAHT + L+ +L+ I+ I  G+I++VFGCGGDRD+GKR +MG +A   
Sbjct: 281 TINNIQKKVIIDYAHTPDGLKKLLQTIKKIYQGKILLVFGCGGDRDKGKRKLMGNVANHY 340

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGK 467
           AD   +T+DNPR+E+P +I  +I  G+    +   +R +AI  AI+  N    ++V+AGK
Sbjct: 341 ADFVCITNDNPRNENPNQIADQICEGVSCLKKIILDRKKAIEYAIKKTNYP--IVVIAGK 398

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           GHE   I+ N +K    D  ++ +I
Sbjct: 399 GHEKYQIIKN-KKIDFSDKKVVMDI 422


>gi|307278242|ref|ZP_07559321.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
 gi|306504993|gb|EFM74184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
          Length = 516

 Score =  272 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|86152832|ref|ZP_01071037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843717|gb|EAQ60927.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 427

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 205/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I V+    L      I                              
Sbjct: 30  AKFQAQALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 60

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 117

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+K +A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 118 EYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFTNITQDHLDFHGTFENYKEAKE 177

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 178 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGISA 226

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA+     +   D   + + + +   V GR E V 
Sbjct: 227 IVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISEFGGVCGRVEQVA 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A
Sbjct: 287 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 338

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 339 KIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRKEAIKKALELKENDDLVVILGK 398

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 399 GDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|300862275|ref|ZP_07108355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|300848800|gb|EFK76557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 506

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 215/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  ++ 
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSDDSLRFIVAS 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAKMII 504


>gi|256854472|ref|ZP_05559836.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|257089097|ref|ZP_05583458.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
 gi|256710032|gb|EEU25076.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|256997909|gb|EEU84429.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
          Length = 506

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 213/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAKMII 504


>gi|315034403|gb|EFT46335.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0027]
          Length = 514

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 215/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A +     +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQHQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAKMII 512


>gi|257080909|ref|ZP_05575270.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
 gi|256988939|gb|EEU76241.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
          Length = 508

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|315166876|gb|EFU10893.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1341]
          Length = 516

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|315144496|gb|EFT88512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2141]
          Length = 511

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 215/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  ++ 
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSDDSLRFIVAS 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAKMII 509


>gi|256957467|ref|ZP_05561638.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
 gi|256947963|gb|EEU64595.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
          Length = 506

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 215/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A +     +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQHQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAKMII 504


>gi|125718538|ref|YP_001035671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus sanguinis SK36]
 gi|166224790|sp|A3CPL6|MURE_STRSV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|125498455|gb|ABN45121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
           putative [Streptococcus sanguinis SK36]
          Length = 481

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/493 (24%), Positives = 214/493 (43%), Gaps = 36/493 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F +++     F   +     + +S DSR   A  +F  + G       F+ +A++ G  
Sbjct: 16  NFRDIVKGEEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEKAVSVGLR 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
             +  + + +           P+L+V++ ++ +SL A   YG   + +  LA TGT GK+
Sbjct: 73  FYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A F  QI  +S   +      +T+       + LTTP  + L K ++   +   TH+ 
Sbjct: 124 TTAYFTYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANDRTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +         
Sbjct: 184 MEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN----SRAV 239

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I+ +   + + V ++             +  F        I + Q  +    GK   ++ 
Sbjct: 240 IVNSGMDHFQIVKEQVA---------SLEHDFYGADSSNTIKDSQAFSFEATGKLAGNYD 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F   NA+ A   C+ +G     + + +     VPGR E V T   G +++VDYA
Sbjct: 291 IQLIGRFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGAKVFVDYA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRS 422
           H   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D+P  
Sbjct: 349 HNGVSLRNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNY 408

Query: 423 EDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEK 480
           EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   IV   + 
Sbjct: 409 EDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVEGEKV 468

Query: 481 KMSVDCDIIREIL 493
               D  +  + L
Sbjct: 469 AYPGDYALAEKYL 481


>gi|229546496|ref|ZP_04435221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|307289939|ref|ZP_07569868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
 gi|229308396|gb|EEN74383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|306499005|gb|EFM68494.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
          Length = 511

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 213/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAKMII 509


>gi|57168799|ref|ZP_00367930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
 gi|57019846|gb|EAL56529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
          Length = 427

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/442 (28%), Positives = 196/442 (44%), Gaps = 55/442 (12%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F   A+ +GA+ I V     L      I                              I
Sbjct: 31  NFASDALEKGAKIIDVEECKKLLKIDENI-----------------------------KI 61

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA--KALS 175
           + +TGT+GK++ A+ +  I    G      G      +  Q +  +  +   L   + L 
Sbjct: 62  IGITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQ 121

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             + +      +E SSH L Q+R++G+K  A  FTN+ +DH+D+H   + Y  AK   F 
Sbjct: 122 LATQKKCDFFIMEVSSHALVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFFT 181

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +    ES   I  D    K  ++ A        + G +   ++  K  ++ +     +++
Sbjct: 182 D----ESLKFINKDTLMIKFNVRNA-------FTYGIENPSLYQVKAYSLEDGISAIVAL 230

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSR 354
           + + F    PL G F +YN L A+     +       + + +     V GR E V     
Sbjct: 231 KDQSFHIDSPLLGLFNLYNLLAASACVNELVKPNLKDLEKAISGFGGVCGRVEQVANG-- 288

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A IAI
Sbjct: 289 ---IIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAI 342

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPRSE+P+ I  EI+ G       +   +R EAI  A+++  K D++V+ GKG E 
Sbjct: 343 ITSDNPRSEEPKDIMNEILSGFQNPDKALMIEDRKEAINKALKLKEKDDLVVILGKGDEN 402

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    D  I+ EIL
Sbjct: 403 TQEIK-GIKHPFSDKAIVNEIL 423


>gi|256617550|ref|ZP_05474396.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
 gi|256597077|gb|EEU16253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
          Length = 508

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 512

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/510 (24%), Positives = 218/510 (42%), Gaps = 30/510 (5%)

Query: 3   LQDLIYKD--FPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           + DL+ ++  + E+I   +     P +    ++ ++S DSR +  G +F    G K +  
Sbjct: 7   ITDLLKENGLYKEIIIDGDWYYTVPEKAARAEVTDLSYDSRKVSDGTLFFC-KGLKFN-P 64

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  AI +GA A +        D       +TP ++V + +K +++ A   YG   E +
Sbjct: 65  EYLASAIKEGATAAISE--LVYTDKLDQEAQSTPQIIVTDVQKAMAVIARHFYGCPDEKL 122

Query: 118 --LAVTGTSGKSSVASFVQQICQR-SGLSSFQIGPT--STISSFAQDNRLTTPSPIYLAK 172
             +  TGT GK++   F + I     G    Q              +  LTTP  + L +
Sbjct: 123 ELIGFTGTKGKTTSVYFTRHILAHEFGPVVGQFSSIDECVDGKNFIEAHLTTPESLDLFR 182

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAK 230
            +      G+ ++++E SS    + R+ G+    G F N+  DHI    H T   Y   K
Sbjct: 183 MMKEAVDNGMKYLAMEVSSQAYKKSRVYGLHFNIGVFLNISPDHISLVEHPTFDDYLWCK 242

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            ++    +      I+     Y + + ++AH  G ++++ G        +     H    
Sbjct: 243 SQI----IVNSDTVILNRYMDYYELLAQKAHELGKKLITFGSDESDADYRYHGKDHGYFD 298

Query: 291 VTIS---VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           V+     +     +F   +PG F   NAL A  +   +  D++   + L++   VPGR E
Sbjct: 299 VSTHNDNLPEVTGEFRVMIPGHFNYSNALAAITVSAQLKDDTSDFAQGLKETK-VPGRME 357

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           F+  N+ G    VDYAH   SL    K ++     GR+IVV G  G + + +R  +G+  
Sbjct: 358 FLK-NNAGMVACVDYAHNYLSLSESFKFMKHEYPDGRLIVVIGAAGGKAESRRKDVGRAL 416

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVL 462
            + AD+AI+T ++   EDP  I   I   I       I   +R+ AI+ A EM    D +
Sbjct: 417 SEYADVAILTSEDNFFEDPHHIDETIKEHITNPNVKVIINVDRVAAIKQAFEMAKPGDAM 476

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            +A KG E        +     D  + +++
Sbjct: 477 FMAAKGREQFMHEKGRDIPYVGDYQLSQKL 506


>gi|256959800|ref|ZP_05563971.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
 gi|256950296|gb|EEU66928.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
          Length = 508

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 211/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R+I  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVSAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     G +IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|29375267|ref|NP_814420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis V583]
 gi|257077542|ref|ZP_05571903.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294780452|ref|ZP_06745817.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
 gi|46576998|sp|Q838A4|MURE_ENTFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29342726|gb|AAO80491.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Enterococcus faecalis V583]
 gi|256985572|gb|EEU72874.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294452451|gb|EFG20888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
          Length = 508

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|227517630|ref|ZP_03947679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|312900256|ref|ZP_07759568.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|227074936|gb|EEI12899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|311292617|gb|EFQ71173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|315575296|gb|EFU87487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309B]
 gi|315581462|gb|EFU93653.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309A]
          Length = 513

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|293384988|ref|ZP_06630822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|293389258|ref|ZP_06633720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|312905977|ref|ZP_07764990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|312909323|ref|ZP_07768179.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
 gi|291077666|gb|EFE15030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|291081422|gb|EFE18385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|310627972|gb|EFQ11255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|311290347|gb|EFQ68903.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
          Length = 513

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 211/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R+I  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 77  VKDGLEIYVSEVPYEVSAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVES 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     G +IV+ G  GD+   +R   G++  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|323479850|gb|ADX79289.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Enterococcus faecalis 62]
          Length = 506

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 213/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAKMII 504


>gi|329576940|gb|EGG58423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TX1467]
          Length = 511

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/507 (24%), Positives = 216/507 (42%), Gaps = 34/507 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--ASRLYGKHPENILAVT 121
           +  G E  V    Y +             ++V + +K +++   A   Y ++   ++  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSIAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQITALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +    V   ++  + D  + + I+
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAKMII 509


>gi|315173998|gb|EFU18015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1346]
          Length = 516

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 484

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 130/498 (26%), Positives = 219/498 (43%), Gaps = 30/498 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++ +     + QL           I   S++S H+Q   +FV   G   D H +I  AI 
Sbjct: 1   MLSETLKSFLKQLGAL-------SIRRFSTNSEHVQCQDVFVCREGTSHDSHRYIESAIT 53

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTS 124
            GA AI+ +           I ++ P+ V  +  + L L  +     H +   + +TGT+
Sbjct: 54  NGAVAIIATKP---------ISASVPVFVTGSYYQSLLLIKAFYQYPHKKIRHIGITGTN 104

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++VA  + Q+ +     S  IG      +   Q+   TTP  + L      ++   VT
Sbjct: 105 GKTTVAHGLNQVLKT-KRQSAYIGTLGVEYAGNKQELSNTTPDSVTLLNLFKDMADAQVT 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SSH L Q R   + L  G  TN+GRDH+DYH+T   Y  AK+++ + + P    
Sbjct: 164 DNVMELSSHALVQDRAGFVPLSVGVITNIGRDHLDYHKTLDGYVQAKLQILDRIQP-NGT 222

Query: 244 AIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           A+I  DD ++   ++RA         S+      ++++ +          ++ +G     
Sbjct: 223 AVINLDDHHANVAIERACSRVNVLTFSMNNSEADLYVEDLNVEPFGATFVLNNQGNKERV 282

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LP  F V N L  A   +A+    A +   L  +    GR +++     G    VDY
Sbjct: 283 FSQLPFLFNVENTLAMAATLLALNWSLADIANALNSVVAPDGRSKYLSL-DNGALALVDY 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH  + L  + + I++ ++ R+I V G  GDR       +GK+    +D+ I T DNP  
Sbjct: 342 AHNFDGLTALYQGIQSQSAKRVITVVGVTGDR-IRDAADIGKLCATHSDVVIFTSDNPLG 400

Query: 423 EDPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN--- 477
           E  E I   +   +   +  E  +R EAI+ A ++    D+++V GKG ET   +T    
Sbjct: 401 EMQEDIFRALTSQVSPTLCYEISDRYEAIQLAKQLSRGGDLILVCGKGSETHQYITTNQV 460

Query: 478 GEKKMSVDCD--IIREIL 493
           G ++   D     + E+L
Sbjct: 461 GRQRYIGDVAALTLEEVL 478


>gi|331091598|ref|ZP_08340434.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403625|gb|EGG83181.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 508

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 109/503 (21%), Positives = 208/503 (41%), Gaps = 33/503 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + K+   L+ +      Q     I +++ DS+ +    +F+   G       ++ +A+  
Sbjct: 15  LVKEQDNLLEEELYGKEQ---TTIEQLTFDSKKVTENTLFIC-KGMAFK-EEYLKEAVKN 69

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA   +    Y L +       + P ++V + RK + + A++ + +  +  N++ + GT 
Sbjct: 70  GAVCYISEQKYELDE-------DVPYILVKDIRKAMPVLANKFFNEAWKELNVIGIGGTK 122

Query: 125 GKSSVASFVQQIC----QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           GKS+   +++ I       +G     +  +  I       ++ +TTP  + L        
Sbjct: 123 GKSTSVYYMKSILDDYLAANGKKESAVISSIDIYDGVEKIESHITTPEAVELHGYFRNAV 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+  V +E SS  L   R++ +      F N+  DHI    H+  + YF++K+ +F+ 
Sbjct: 183 NCGMEFVEMEVSSQALKYGRVNEMMFDVAVFLNICEDHISPIEHKDFEDYFSSKLLIFQ- 241

Query: 237 LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              K   A++  D  +S  +++ A        +S   +    +   +    +     +  
Sbjct: 242 ---KTKTAVVNLDADFSDRILEAAQCAPKVVTISTKNENADFYAYNIHKEGDGTIFNVRC 298

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D +F   +PG F V NAL    +     I    +   L+K     GR E   ++   
Sbjct: 299 AEFDKEFELTMPGFFNVENALATIAVANQFNIPVEFMYSGLKKARS-SGRMELSTSDDNK 357

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               VDYAH   S E +  +I+       II +FGC G +   +R  +G IA   A    
Sbjct: 358 IIAVVDYAHNKLSFEKLFSSIKEEYPDREIISIFGCPGKKAFTRRRDLGTIAGKYAKKVY 417

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +  ++P  E  E+I  +I   +      +    +R EAI+ AIE +    +L++ GKG+E
Sbjct: 418 LAAEDPGYEPVEEISRDIAEYVEAQGCPYEMIEDRGEAIKKAIESVENPSILLITGKGNE 477

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T             D D +++ L
Sbjct: 478 TRQKYGCEYVDCPSDTDYVKKYL 500


>gi|293557173|ref|ZP_06675725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
 gi|291600674|gb|EFF30974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
          Length = 501

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 202 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLRE 257

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S                L G F   
Sbjct: 258 TADLFQIPTITYGRLEESNY-QVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQE 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S    + L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 317 NAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 374

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI
Sbjct: 375 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEI 434

Query: 433 IHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              I         + +R EAIR A+     QD +V+AGKG +    +   ++    D  I
Sbjct: 435 NEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAI 494

Query: 489 IREIL 493
           ++ ++
Sbjct: 495 VKRLI 499


>gi|227554782|ref|ZP_03984829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
 gi|227176081|gb|EEI57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
          Length = 513

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 77  VKDGLEIYVSEMPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|325694972|gb|EGD36876.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK150]
          Length = 481

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/500 (24%), Positives = 216/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSRQADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +   + + V ++  +        G        +           +    G
Sbjct: 236 ---SRAVIVNSGMDHFQIVKEQVASMEHDFYGAGSSNTITDSRA---------FSFEATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGHYDIQLIGHFNQENAVAAGLACLRLGASLKDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH   SL  +L  +     G+II++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KVFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   ++   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVDKIADREEAIKKALSLTEREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVAYPGDYALAEKYL 481


>gi|255973740|ref|ZP_05424326.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
 gi|255966612|gb|EET97234.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
          Length = 480

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/485 (24%), Positives = 205/485 (42%), Gaps = 33/485 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F    G      +++  A+  G E  V    Y +       
Sbjct: 9   QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 ++V + +K +++ +   Y        ++  TGT GK++ A F + I   +    
Sbjct: 65  ------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQK 118

Query: 145 FQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  T            + LTTP  + L + ++   + G+TH  +E SS     +R+  
Sbjct: 119 TALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYK 178

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +    G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + + 
Sbjct: 179 LFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQLITHSKVIVLNHEADYFPLLKET 234

Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQVYN 314
           A       +  G Q    +      +  +  +  +       G    +   L G+F   N
Sbjct: 235 AQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL+ +L 
Sbjct: 295 ALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-TNTNGATVYVDYAHNYDSLKNLLT 352

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP KI  EI 
Sbjct: 353 FVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQ 412

Query: 434 HGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             I          +R EAI  A+ +     D +V+AGKG +    V   ++  + D  + 
Sbjct: 413 AHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALA 472

Query: 490 REILG 494
              + 
Sbjct: 473 EAFIN 477


>gi|307289639|ref|ZP_07569583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|306499453|gb|EFM68826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|315166172|gb|EFU10189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1302]
          Length = 516

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 211/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGI-TATTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|332359085|gb|EGJ36906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK49]
          Length = 481

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 218/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   NILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  ++   +      +T+       + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQNHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K  L +  
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN- 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ +   + + V ++          V  +  F        I + Q  +    G
Sbjct: 236 ---SRAVIVNSGMDHFQIVKEQV---------VSMEHDFYGAGSSNTIIDSQAFSFEAAG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGHYDIQLIGRFNQENAVAAGLACLRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+
Sbjct: 342 KIFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   ++   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAISEEIASYISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVTYPGDYALAEKYL 481


>gi|255971128|ref|ZP_05421714.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
 gi|255962146|gb|EET94622.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
          Length = 480

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/485 (24%), Positives = 206/485 (42%), Gaps = 33/485 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F    G      +++  A+  G E  V    Y +       
Sbjct: 9   QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 ++V + +K +++ +   Y        ++  TGT GK++ A F + I   +    
Sbjct: 65  ------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQK 118

Query: 145 FQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  T            + LTTP  + L + ++   + G+TH  +E SS     +R+  
Sbjct: 119 TALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYK 178

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +    G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + + 
Sbjct: 179 LFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQLITHSKVIVLNHEADYFPLLKET 234

Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQVYN 314
           A       +  G Q    +      +  +  +  +       G    +   L G+F   N
Sbjct: 235 AQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL+ +L 
Sbjct: 295 ALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-TNTNGATVYVDYAHNYDSLKNLLT 352

Query: 375 NIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +R   + GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP KI  EI 
Sbjct: 353 FVREEHSDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQ 412

Query: 434 HGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             I          +R EAI  A+ +     D +V+AGKG +    V   ++  + D  + 
Sbjct: 413 AHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALA 472

Query: 490 REILG 494
              + 
Sbjct: 473 EAFIN 477


>gi|256761439|ref|ZP_05502019.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
 gi|256682690|gb|EEU22385.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
          Length = 480

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/485 (24%), Positives = 205/485 (42%), Gaps = 33/485 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F    G      +++  A+  G E  V    Y +       
Sbjct: 9   QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 ++V + +K +++ +   Y        ++  TGT GK++ A F + I   +    
Sbjct: 65  ------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQK 118

Query: 145 FQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  T            + LTTP  + L + ++   + G+TH  +E SS     +R+  
Sbjct: 119 TALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYK 178

Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +    G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + + 
Sbjct: 179 LFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQLITHSKVIVLNHEADYFPLLKET 234

Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQVYN 314
           A       +  G Q    +      +  +  +  +       G    +   L G+F   N
Sbjct: 235 AQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKGN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA   + +G       + +     VPGR E + TN+ G  +YVDYAH  +SL+ +L 
Sbjct: 295 ALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-TNTNGATVYVDYAHNYDSLKNLLT 352

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +R     GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP KI  EI 
Sbjct: 353 FVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQ 412

Query: 434 HGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             I          +R EAI  A+ +     D +V+AGKG +    V   ++  + D  + 
Sbjct: 413 AHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALA 472

Query: 490 REILG 494
              + 
Sbjct: 473 EAFIN 477


>gi|57238652|ref|YP_179783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni RM1221]
 gi|57167456|gb|AAW36235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni RM1221]
          Length = 427

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 202/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I V+    L      I                              
Sbjct: 30  AKFHAQALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 60

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 117

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 118 EYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKE 177

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 178 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGISA 226

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA+     +   D   + + +     V GR E V 
Sbjct: 227 IVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVA 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A
Sbjct: 287 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 338

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 339 KIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVVILGK 398

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 399 GDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|229816609|ref|ZP_04446907.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
 gi|229807815|gb|EEP43619.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
          Length = 518

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 133/495 (26%), Positives = 206/495 (41%), Gaps = 26/495 (5%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L     + R  +I   + DSR +    +FV   G       ++ QA+A GA A V    Y
Sbjct: 25  LEDVRDEARGIEIAYATDDSRRVVPRTLFVC-KGAAFR-REYLLQALAAGAVAYVSEVDY 82

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
            +      +    P ++V++ R  L L A   Y        + A TGT GK++ A +++ 
Sbjct: 83  EVDG---EVGHEVPRVLVNDIRTALGLLADAAYDHPSGRVKVCAFTGTKGKTTSAYYLRS 139

Query: 136 ICQRSGLSSFQ------IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           I         +       G          D+ LTTP    L +  +  +S G  HV +EA
Sbjct: 140 ILSEHAREMGRPVPALLTGVEYDDGVERGDSLLTTPESFELERRFANAASVGCEHVVMEA 199

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           SS  +   R  G+    G+FTN G DHI    H T + Y  +K+ LFE    + +   + 
Sbjct: 200 SSQAIKFRRTLGVDFAVGAFTNFGEDHISPIEHPTLEDYLESKLLLFERC--RVAVVNLD 257

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            D A        A     RVL+   +     + +          + T+       + + P
Sbjct: 258 MDVAERALAAAHASRTVERVLTYSLEDAAADVFVPSYVRTERGIRATVRTPRIARELMIP 317

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            P  F + NAL A     A+GI +  +   L + +   GR E   + S      VDYAH 
Sbjct: 318 SPAVFNLSNALGAIACAEALGISADAIETGLSRAYAP-GRMELYPSESGRIMGVVDYAHN 376

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             SLE +L+++R +       VVFG  G +   +R  MG+ A  LAD  ++T+D+P  ED
Sbjct: 377 GMSLETLLRDLRASYPDREFAVVFGATGGKGVDRRETMGEAAGKLADRIVITEDDPGPED 436

Query: 425 PEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P  I   I       G   +    +R EAIRTA+   +   V++V GKG++   +     
Sbjct: 437 PALICDAIARAVSAQGNENWQVVLDRSEAIRTAVSETHAPAVVIVTGKGNDPFMLRNGVR 496

Query: 480 KKMSVDCDIIREILG 494
           +    D D +R  L 
Sbjct: 497 EPYEPDGDQLRRALA 511


>gi|315149406|gb|EFT93422.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0012]
          Length = 513

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 122/508 (24%), Positives = 211/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP +I  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAEICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|257415238|ref|ZP_05592232.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           AR01/DG]
 gi|257157066|gb|EEU87026.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           ARO1/DG]
          Length = 508

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 478 KGADLYQKVNGIDEPYAGDFALAEAFIN 505


>gi|283957027|ref|ZP_06374499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791528|gb|EFC30325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 427

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 202/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I V+    L      I                              
Sbjct: 30  AKFHAQALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 60

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 117

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 118 EYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKE 177

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 178 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGISA 226

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA+     +   D   + + +     V GR E V 
Sbjct: 227 IVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVA 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A
Sbjct: 287 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 338

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 339 KIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRKEAIKKALELKENDDLVVILGK 398

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 399 GDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|218563230|ref|YP_002345010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|9297095|sp|O69290|MURE_CAMJE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112360937|emb|CAL35738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926835|gb|ADC29187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315929485|gb|EFV08681.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 427

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 202/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I V+    L      I                              
Sbjct: 30  AKFHAQALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 60

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 117

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 118 EYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKE 177

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 178 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGIST 226

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA+     +   D   + + +     V GR E V 
Sbjct: 227 IVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVA 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A
Sbjct: 287 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 338

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 339 KIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVVILGK 398

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 399 GDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|153952381|ref|YP_001398918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939827|gb|ABS44568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. doylei 269.97]
          Length = 427

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 132/445 (29%), Positives = 203/445 (45%), Gaps = 61/445 (13%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F  QA+ +GA+ I V+    L      I                              I
Sbjct: 31  KFHAQALERGAKIIDVNECKKLLKIDEKI-----------------------------QI 61

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKALS 175
           + +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L 
Sbjct: 62  IGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTLE 118

Query: 176 YLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           YL     +      +E SSH L Q+R++G+K  A  FTN+ +DH+D+H T + Y  AK  
Sbjct: 119 YLQIATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFTNITQDHLDFHGTFENYKEAKEL 178

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F +    ES   I  D    K  ++ A        + G +   ++  K  ++       
Sbjct: 179 FFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGISAV 227

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGT 351
            + + + F    PL G F +YN LVA+     +   D   + + + +   V GR E V  
Sbjct: 228 ATNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISEFGGVCGRVEQVAK 287

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A 
Sbjct: 288 G-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAK 339

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GKG
Sbjct: 340 IAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGKG 399

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
            ET   +  G K    D  ++ EIL
Sbjct: 400 DETTQEIK-GVKYPFNDKVVVNEIL 423


>gi|315170766|gb|EFU14783.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1342]
          Length = 516

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 23  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKVMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 247

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 248 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVES 307

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 308 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 365

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 366 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 425

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 426 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 485

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 486 KGADLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|256964548|ref|ZP_05568719.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
 gi|256955044|gb|EEU71676.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
          Length = 508

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 15  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VKVGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 239

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 240 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIIYGSQPASEVDYSFAVSSDDSLRFIVES 299

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 300 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 357

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 358 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 417

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 418 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 478 KGADLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 501

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 120/492 (24%), Positives = 212/492 (43%), Gaps = 51/492 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  V+SDSR ++ G+IFVAI G KEDG+ FI +A+ +GA  I   +   ++D      
Sbjct: 6   IEIKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIKDCIVK-- 63

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG--TSGKSSVASFVQQICQRSGLSSF 145
                  V + RK L    ++ YG   + +L +    T+GK++  + +  I + SG  + 
Sbjct: 64  ------KVPDCRKELGNLCNQFYGYPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAG 117

Query: 146 QIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     I +    ++LTTP    +   L+ +  +GVT   +E SSHGL  +R+ GI  
Sbjct: 118 LIGTLFIKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNRVHGIDF 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+  DH+++H+    Y N+K +LF+ L  +   A+I  DD Y  ++++      
Sbjct: 178 DIAIHTNINWDHLNFHKNINDYVNSKKKLFDSL-SEGKVALINHDDQYGIKMLE--GKKE 234

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT------------ISVEGKDFDFLFPLPGEFQV 312
              ++ G   K                T            + +E  ++     L G   +
Sbjct: 235 ILAITYGLSSKSTVTASSIDFGFTTSFTYCLQRGITTLEGVEIEAFEYPVTSNLIGNHNI 294

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YNAL+A   C+ + I    +++ ++    V  R + +        +  DY H  +S E +
Sbjct: 295 YNALLAISTCLLLNIPIDKIVQSIKNYPAVQRRMQII--YRDKFTVIDDYCHNPSSYEAV 352

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-----AIVTDD-------NP 420
              I+ +    + +V G  G+R         ++     DI      ++TD        N 
Sbjct: 353 FNAIQNLQYNNLHIVNGIRGNRGVHINKKNAEVLKQWYDILNIKKLVITDSTDFIDPMNS 412

Query: 421 RSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             E+ + I  E+     IP F  + N  +AI   I  L + D+L++ G        +  G
Sbjct: 413 ALEEEKNICFEVFNSSAIP-FQYERNLRDAIEEGIRDLRQGDILLLLGA-----QSMDKG 466

Query: 479 EKKMSVDCDIIR 490
           ++      +II+
Sbjct: 467 KQLFF---EIIK 475


>gi|307272480|ref|ZP_07553733.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
 gi|306510765|gb|EFM79782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
          Length = 513

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 123/508 (24%), Positives = 212/508 (41%), Gaps = 34/508 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL+ K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 20  EDLL-KEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 77  VKVGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +      +  T            + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+TH  +E SS     +R+  +    G F N+  DHI    H T   YF  K     +
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCK----RQ 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+      ++  +  Y   + + A       +  G Q    +      +  +  +  +  
Sbjct: 245 LITHSKVIVLNHEADYFPLLKETAQQQKVPAIIYGSQPASEVDYSFAVSSDDSLRFIVES 304

Query: 296 E----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G    +   L G+F   NAL AA   + +G       + +     VPGR E + T
Sbjct: 305 PADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAA-TTVPGRMESL-T 362

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+ G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LA
Sbjct: 363 NTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELA 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           D+A++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AG
Sbjct: 423 DVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAG 482

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   ++  + D  +    + 
Sbjct: 483 KGADLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|205355653|ref|ZP_03222423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346430|gb|EDZ33063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 450

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 202/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I V+    L      I                              
Sbjct: 53  AKFHAQALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 83

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 84  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 140

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 141 EYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKE 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 201 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGISA 249

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA   +   +  D   + + +     V GR E V 
Sbjct: 250 IVTNKNQTFHIDSPLLGLFNLYNLLVASVCVNELVKPDLKDLEKAISGFGGVCGRVEQVA 309

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A
Sbjct: 310 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 361

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 362 KIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKRALELKENDDLVVILGK 421

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 422 GDETTQEIK-GIKYPFSDKVVVNEIL 446


>gi|283953741|ref|ZP_06371272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794782|gb|EFC33520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 427

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 125/443 (28%), Positives = 192/443 (43%), Gaps = 55/443 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I V+    L      I                              
Sbjct: 30  AKFHTQALEKGAKIIDVNECKKLLKIDEKI-----------------------------K 60

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA--KAL 174
           I+ +TGT+GK++ A+ +  I    G      G      +    +  T  +   L   + L
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDESIDEKTLTTSPILKTLEYL 120

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              + +      +E SSH L Q+R++G+K  A  FTN+ +DH+D+H   + Y  AK   F
Sbjct: 121 QIATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKEAKELFF 180

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +    ES   I  D               C   + G +   ++  K  ++         
Sbjct: 181 TD----ESLKFINKD-------ALAIKFNVCNAFTYGIENPALYQIKAYSLEEGISAIAK 229

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNS 353
            + + F    PL G F +YN L A+     +       + + +     V GR E V    
Sbjct: 230 NKDQTFHIDSPLLGLFNLYNLLAASACVNELAKPNLKDLEKAISGFGGVCGRVEQVAKG- 288

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A IA
Sbjct: 289 ----VIVDFAHTPDGIEKVLNT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIA 341

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+  K D++V+ GKG E
Sbjct: 342 IITSDNPRSEEPKTIMEEILLGFKKKEKVLTIEDRKEAIKKALELKEKDDLVVILGKGDE 401

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  G K    D  +I EIL
Sbjct: 402 TTQEIK-GVKYPFSDKVVINEIL 423


>gi|154148328|ref|YP_001405805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
 gi|153804337|gb|ABS51344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
          Length = 429

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 133/476 (27%), Positives = 199/476 (41%), Gaps = 69/476 (14%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             ++ +S   Q G  F+ I     D +  F   A+  GA+ I +  A  + + +  I   
Sbjct: 8   TFITDNSNECQNGAYFMQI-----DANMKFADSALKNGAKIISIDEAKKMLNINKNI--- 59

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                                      I+ +TGT+GK++ A+ +       G      G 
Sbjct: 60  --------------------------KIVGITGTNGKTTTAAAIYSTLLDLGFKC---GL 90

Query: 150 TSTISSFAQDNRLT-----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           + T  +F  D R+      T S       L   S +      +E SSH + Q+R+ G+  
Sbjct: 91  SGTRGAFINDCRIDEKGLTTSSVFKTIGYLYEASKEDCEFFIMEVSSHAIAQNRIQGLNF 150

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVMKRAHN 262
               FTNL +DH+DYH+T + Y   K   F++  PK     A     +  +         
Sbjct: 151 ALKIFTNLTQDHLDYHKTMEEYARVKSSFFKDDTPKLINKDAGGITYNETNARTYALKQI 210

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A   VL+   +G    L             +     +     PL GEF +YN + A    
Sbjct: 211 ATYSVLAYSVKGAIDAL-------------LRTPDGEIQIESPLVGEFNLYNLMAAFAAV 257

Query: 323 IAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             +   D+  + E L     V GR + V   SR   + VD+AHT + +E +L  ++    
Sbjct: 258 KILTNYDNKKIAEALANFGGVEGRVQIV---SRNPYVVVDFAHTPDGIEKVLNALKDH-- 312

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---G 438
             +I VFG GGDRD+ KRP MG I    A  AI+T DNPRSEDP  I  EI  G+     
Sbjct: 313 -ELIAVFGAGGDRDKTKRPKMGAIVEHFAKTAIITSDNPRSEDPNVIIDEIESGMREKNK 371

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            I+  NR EAI+ AI +    +++V+ GKG ET   +  G K    D + + EIL 
Sbjct: 372 IIKIENRAEAIKKAISLAKNGEMVVILGKGDETYQEIK-GVKHHFNDKECVLEILN 426


>gi|154174185|ref|YP_001409125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
 gi|153793058|gb|EAT99621.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
          Length = 432

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 195/473 (41%), Gaps = 62/473 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           V+ +S   + G  FV     +   +  F   A+ +GA+ I +     + +    I     
Sbjct: 10  VTDNSNECERGCFFV-----QTHANSKFSQDAVKKGAKLIGLEECKKILNIDENI----- 59

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                                    I+ +TGT+GK++ A+ + +  +  G      G   
Sbjct: 60  ------------------------KIVGITGTNGKTTTAAAIYETLRELGHKCALSGTRG 95

Query: 152 T-ISSFAQDNRLTTPSPIYLA-KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             I     D +  T S I      L   S +G  +  +E SSH +DQ R++ +K     F
Sbjct: 96  AFIEGERIDEKALTTSAILQTLGYLKAASQRGCKYFIMEVSSHAIDQKRIESLKFALKIF 155

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH++ Q Y   K   FE+    +S  +I  DD   K   K A        +
Sbjct: 156 TNLTQDHLDYHKSMQEYARVKSSFFED----DSLKLINIDDGGIKFNPKNA-------YT 204

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +           +       I     D     PL GEF +YN + A G    +    
Sbjct: 205 YSLKKPASFAPVAYGLKGGIDAVIKTPNGDVQIDSPLQGEFNLYNLIAALGAVYLLAKPE 264

Query: 330 ALV-LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                + + K   V GR E V +      + VD+AHT + +E +L  +R +    +IV+F
Sbjct: 265 NSKLSKAISKFSGVDGRVEVVSSE---PLVIVDFAHTPDGIEKVLNALRHL---NLIVIF 318

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445
           G GGDRD  KRP MG IA   A I IVT DNPRSE+PE I  EI  G+          +R
Sbjct: 319 GAGGDRDNTKRPKMGAIAQRYAQICIVTSDNPRSEEPEAIIDEICAGMRMDESVSRISDR 378

Query: 446 IEAIRTA---IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +AI      ++ L     LV+ GKG E    +  G K    D +++ + L L
Sbjct: 379 KKAIELGLGRLKELGAGWALVILGKGDEEYQEIK-GVKHPFSDKEVVLKALAL 430


>gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC
           35896]
          Length = 510

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 214/492 (43%), Gaps = 46/492 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++ +    +   + +I+ ++  S  ++   +FV I G K DGH ++
Sbjct: 1   MKLSKLLQN-----VSVIEYKNVD-MDLEISSLAYHSAKVEQNGLFVCIKGYKADGHKYL 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+   A   VV +   +         + P + V+++R  L+  +S  Y    +   ++
Sbjct: 55  ASAVEHNAIVAVVETFQDI---------DIPQVKVEDSRIALATMSSNYYDNPSKKMTVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
            +T T+GK++ A  V ++ +++   +  IG     S +    + LTTP  + L K ++ +
Sbjct: 106 GITATNGKTTTAFMVDEVLRKAKKKTGIIGTVMIRSLNEVIPSVLTTPESLDLQKYMAMM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGVTH+++E SS  L+ HR+ G+      F N+ RDHID H + + YF  K  L   +
Sbjct: 166 VEQGVTHLTMEVSSSALELHRVHGVDFDFVCFNNISRDHIDLHGSFEDYFQIKSTLIRGM 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKKVCAIHNKQ 289
            P  + A+I ADD+   ++++   N          +G            +     + N  
Sbjct: 226 KP-SAKAVINADDSLLHDLIQEKQNQVITYSVESNRGDLYCTQLDLSTGIANWKIVPNPT 284

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T+S+   +      +PG   VYNA+ A  LC+   ID   + + L     V  RFE +
Sbjct: 285 KSTLSLLNSEVKIALSVPGYHSVYNAMAAMELCLLCQIDIDTIQDGLHSFKGVERRFELI 344

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR--------------D 395
               +  +I  D+   + ++ + L+ ++ +   ++  ++   G R               
Sbjct: 345 --YDKEFKIIDDHFANTGNIRVTLETLKKMKYEQLHFIYAIRGSRGVVVNRENAEEICSG 402

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIE 454
               P+   +A         T+ +  +++   +  +I++     +    +  EAI   ++
Sbjct: 403 IENLPLKTFVATKSVHHV--TEKDKVTQEEITVFQDIMNCCERTVPIYDDLEEAIAFVLK 460

Query: 455 MLNKQDVLVVAG 466
            +   DV+++AG
Sbjct: 461 EVQPGDVILLAG 472


>gi|315059091|gb|ADT73420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 404

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 202/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I V+    L      I                              
Sbjct: 7   AKFHAQALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 37

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 38  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 94

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 95  EYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKE 154

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 155 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGISA 203

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA+     +   D   + + +     V GR E V 
Sbjct: 204 IVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVA 263

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A
Sbjct: 264 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 315

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 316 KIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVVILGK 375

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 376 GDETTQEIK-GIKYPFSDKVVVNEIL 400


>gi|327470473|gb|EGF15929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK330]
          Length = 481

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 127/500 (25%), Positives = 217/500 (43%), Gaps = 38/500 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +D  F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      +T+       + LTTP  + L   ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHHPALLSTMNTTLDGETFFKSTLTTPESLDLITMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237
              TH+ +E SS    + R+ G+    G F N+  DHI    H T + YF  K      L
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNK-----RL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L   S A+I        +++K              +  F        I + Q  +    G
Sbjct: 232 LMDNSRAVIVNSGMDHFQIVKEQVAC--------LEHDFYGAGSSNTITDSQAFSFEATG 283

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K    +   L G F   NA+ A   C+ +G     + + +     VPGR E V T   G 
Sbjct: 284 KLAGHYDIQLIGRFNQENAVAAGLACLRLGASLKDIKKGIAA-TRVPGRME-VLTQKNGA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH   SL  +L  +     G+II++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KIFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I   +E   +R EAI+ A+ +   + D +++AGKG +   
Sbjct: 402 TADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +     D  +  + L
Sbjct: 462 IVEGEKVAYLGDYALAEKYL 481


>gi|86149341|ref|ZP_01067572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596407|ref|ZP_01099644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|85840123|gb|EAQ57381.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191248|gb|EAQ95220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315927609|gb|EFV06940.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 404

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 202/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I V+    L      I                              
Sbjct: 7   AKFHAQALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 37

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 38  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 94

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 95  EYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKE 154

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 155 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGIST 203

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA+     +   D   + + +     V GR E V 
Sbjct: 204 IVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVA 263

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A
Sbjct: 264 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 315

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 316 KIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVVILGK 375

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 376 GDETTQEIK-GIKYPFSDKVVVNEIL 400


>gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 503

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 115/495 (23%), Positives = 223/495 (45%), Gaps = 50/495 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+     + ++         R+ +I  +S  S  ++ G +FV + G K DGH ++
Sbjct: 2   MKLKELLSSIEIKNMDDE-------RDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYL 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA A +V               + P  VV N+R  L+   +R YG   +   ++
Sbjct: 55  GKAAQNGAVAAIVEELQE--------DVDIPQYVVSNSRIALAKLGARFYGDPSQKMKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +T T+GK++ +  V  I ++SG  +  IG     I   +    LTTP  + L   LS +
Sbjct: 107 GITATNGKTTTSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV+HV++E SS  L+ HR++ +     +  N+ R+HID H + + YF AK  L    
Sbjct: 167 VDKGVSHVTMEVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRN- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISV 295
             + S A++  D  YS  ++ +       V++ G   K  H+  K +     + + T+ +
Sbjct: 226 ASENSIAVLNLDCPYSASLVDQTK---AEVITFGVNSKEGHIACKDLDLTTGRAKFTLEI 282

Query: 296 -----------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                      E  +F+    +PG   VYN++VA  + +  G+ +A + E L+    V  
Sbjct: 283 LKPFTANGQQYEPSEFEVQLLVPGLHSVYNSMVAITVSLLCGVSTATIQETLKTFAGVER 342

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           RF+F+       +I  D+   S ++++ L  ++ +   ++ +V+   G+R         +
Sbjct: 343 RFQFIFEED--IKIIDDHFANSGNIDVTLGTLKYMDYEKLHLVYAIRGERGPTVNRENAE 400

Query: 405 IALDLA------------DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-EAIRT 451
                A             ++ VT  +  +E    +  E++      ++  + + ++I  
Sbjct: 401 AIARWAPKLGITEIIATKSVSHVTHKDRVTEAELTVFQEVMRDAGIKVDLFDELPDSICY 460

Query: 452 AIEMLNKQDVLVVAG 466
           AI   N+ D++++ G
Sbjct: 461 AIGKANEGDLILLGG 475


>gi|319948585|ref|ZP_08022712.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
 gi|319437751|gb|EFV92744.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
          Length = 521

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/482 (27%), Positives = 213/482 (44%), Gaps = 40/482 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+           +  + +++ DSR +  G  ++A+ G+   G  F  +           
Sbjct: 20  LVGGSRATARAVADLVVVDITDDSRSVSTGHAYLALPGSHHHGLDFEGR----------A 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVAS 131
           + A +    S    +  P LVV + R      ++  +G       +  VTGT+GK+S A 
Sbjct: 70  AEAGAAVAISDRASATLPTLVVGDPRAVSGPLSAWFHGCPSNAMRVFGVTGTNGKTSTAH 129

Query: 132 FVQQICQRSGLSSFQI-GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            ++     +G SS  I G     +        TTP    L + L  +   G T  ++E S
Sbjct: 130 LLEAGLAAAGESSGLISGAAIRGAGLDLRPVRTTPEAPMLQRTLGRMVRGGATACAMEVS 189

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH +DQ R+DG++    +FTNLG DH+DYH T + ++  K  LF     +   A++  DD
Sbjct: 190 SHAIDQGRVDGVRFRTVAFTNLGHDHLDYHHTMEEHYRVKASLFTA--ARADTAVVSVDD 247

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            + + +   +        SV   G  ++ + V       + T             + G  
Sbjct: 248 HHGRRLAAESE-PPTWTCSVRDVGADVYAEDVVCDGTGSRFTARTPYGAVPVRLRVLGPH 306

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           QV NALVA    +A GID     E L +L  VPGR E V    +     VDY H      
Sbjct: 307 QVPNALVALTCLLADGIDPLAAAEGLSRLSRVPGRCEPVNA-GQSFTALVDYMHNEPGQR 365

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L ++R++ +GR+I+V G  G RD+ KR  +G+ A   AD+ IVTD++P  EDP  +RA
Sbjct: 366 ALLPHLRSMATGRLILVIGATGGRDRTKRRPLGRTAASFADLVIVTDESPEDEDPAAVRA 425

Query: 431 EII----------------------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +++                       G+   +E+ +R  A+  A+ +    DV+VVAG+G
Sbjct: 426 DVLAGAREAAGARAGGAAGVRARETAGV-EVVEEPDRGRALALAVAVAGPGDVVVVAGRG 484

Query: 469 HE 470
            E
Sbjct: 485 SE 486


>gi|220912334|ref|YP_002487643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
 gi|219859212|gb|ACL39554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
          Length = 545

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 144/495 (29%), Positives = 232/495 (46%), Gaps = 29/495 (5%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P    +  +  ++ +SR ++AG ++VA+ G    G  F+ QA+  GA A++   A + +
Sbjct: 43  VPGHAADVTVTGITLNSRSVEAGDLYVALPGASRHGADFVAQAVGAGAVAVLTDDAGA-R 101

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQ 135
             +    +  P+LVVD  R  +   ++ +YG     +    +  VTGT+GK++   F+  
Sbjct: 102 LLALGNDTPVPVLVVDKPRNVVGPLSAAIYGSTDGAEDDFTLFGVTGTNGKTTTTYFINS 161

Query: 136 ICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +  G  S  IG    +  +    + LTTP    +   L+ +  +G+   ++E SSH +
Sbjct: 162 LLRALGTRSGLIGTIEILAGTEPIPSLLTTPESTEVHGLLALMRERGLGAAAMEVSSHAI 221

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              R+DG+      FTNL +DH+D H T   YF  K  LF     + +   +  DD + +
Sbjct: 222 SYQRVDGVLFDVAGFTNLTQDHLDLHGTMDDYFATKAELFTPARARRAVVTV--DDEWGR 279

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVY 313
            +   A      + + G       +            T+   +G +      LPG F V 
Sbjct: 280 RLAGTAGIPVTTLSTDGQAAADWAVATTEPRGLGTAFTLKGPDGAELRLHTGLPGSFNVA 339

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           NA +AA + +A G+D A++ E ++        VPGR + V          VD+AH +++L
Sbjct: 340 NAALAAVMVLAGGVDHAVLQEAVDTADPFTVAVPGRMQLVAEQ---PAAVVDFAHNTDAL 396

Query: 370 EMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              L+ +R      R+IVVFG  G RDQGKRP MG +A  LAD  I+TDD+P  ED   I
Sbjct: 397 ARALEAVRPPAPDSRLIVVFGATGQRDQGKRPAMGAVAARLADTVIITDDDPHDEDAAAI 456

Query: 429 RAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           RA+++ G              +E   R EAIR A+E+    D ++VAG+GHE    V   
Sbjct: 457 RADVLAGAEHARSSESLPCEILEVFPRDEAIRRAVELAGPSDSILVAGRGHEVWQEVKGV 516

Query: 479 EKKMSVDCDIIREIL 493
              +  D   +R  L
Sbjct: 517 NLAL-DDRVELRSAL 530


>gi|157415861|ref|YP_001483117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386825|gb|ABV53140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748498|gb|ADN91768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931687|gb|EFV10648.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 427

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 202/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I V+    L      I                              
Sbjct: 30  AKFHAQALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 60

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 117

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+K +A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 118 EYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFTNITQDHLDFHGTFENYKEAKE 177

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 178 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGISA 226

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
             + + + F    PL G F +YN LVA+     +   D   + + +     V GR E V 
Sbjct: 227 IATNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVA 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MG I    A
Sbjct: 287 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGTIVEHFA 338

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 339 KIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGK 398

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 399 GDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|32267364|ref|NP_861396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter hepaticus ATCC 51449]
 gi|46576947|sp|Q7VF14|MURE_HELHP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|32263417|gb|AAP78462.1| UDP-N-acetylmuramyl tripeptide synthase [Helicobacter hepaticus
           ATCC 51449]
          Length = 463

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 120/403 (29%), Positives = 180/403 (44%), Gaps = 32/403 (7%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNR 161
           L A+  +     NI+ +TGT+GK++ A+ +  I    G +   +G      +  +     
Sbjct: 78  LMANFSHNSP--NIVGITGTNGKTTTAAIIYSILLDLGFNVALLGTRGFFINEHRIKPKG 135

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LTTPS + L + L     Q      +E SSH ++Q R+ G+       TN+  DH+DYH+
Sbjct: 136 LTTPSMLELYENLCIAMEQKCNFFIMEVSSHAIEQERIAGLDFALKILTNITSDHLDYHK 195

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           + + Y   K   FE     E   ++ AD+ Y     K A          G + K      
Sbjct: 196 SVEEYRRIKNSFFEG----EGRKLLNADEPYIYCTDKAA-------YFYGIEKKGNLSVD 244

Query: 282 VCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLE 334
           V A+ N     IS   +D+           L G+  +YN L A G    +       + E
Sbjct: 245 VYALENGIDGYISWRERDYKTNEQSAIQAHLYGKHNLYNTLAAIGAVKILTQEPLERIAE 304

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            LE    V GR E V        + VD+AHT + +  I ++ R      I VVFG GGDR
Sbjct: 305 ALEHFGGVSGRMEVVH---NMPLVIVDFAHTYDGMYQIFESFRHCK---IAVVFGAGGDR 358

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRT 451
           D+ KRP MG  A   A    +T DNPR+E P+ I  +I+ G+        + +R +AI  
Sbjct: 359 DKSKRPKMGACAQQFAHKIYITSDNPRTESPKSIIEDILSGMQDGEYVFVEADRKKAIYM 418

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           A+E L   +VL++ GKG E   I+ N EK    D +++R    
Sbjct: 419 ALESLESDEVLLILGKGDEDYQIIGN-EKIYFDDREVVRNYFA 460


>gi|86152303|ref|ZP_01070514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85840792|gb|EAQ58043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 427

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 204/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  +A+ +GA+ I V+    L      I                              
Sbjct: 30  AKFHARALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 60

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 117

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+  +A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 118 EYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFVAKIFTNITQDHLDFHGTFENYKEAKE 177

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  KV ++      
Sbjct: 178 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKVYSLEEGISA 226

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA+     +   D   + + +     V GR E V 
Sbjct: 227 IVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELIKPDLKDLEKAISGFGGVCGRVEQVA 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A
Sbjct: 287 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFA 338

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 339 KIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGK 398

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 399 GDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|215431088|ref|ZP_03429007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis EAS054]
          Length = 379

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 169/369 (45%), Gaps = 12/369 (3%)

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
            S+    V+   + +G  +  IG     +      + LTTP    L   L+ +  +GV  
Sbjct: 1   NSTTTYLVEGGLRAAGRVAGLIGTIGNRVGGADLPSALTTPEAPTLQAMLAAMVERGVDT 60

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      +  
Sbjct: 61  VVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRART 120

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFL 303
            +   D  +   M         V +      +            QQ T I   G      
Sbjct: 121 AVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIG 180

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG + V N LVA  +   +G+     +  L ++  VPGR E +    +G    VDYA
Sbjct: 181 IRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYA 238

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR E
Sbjct: 239 HKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDE 297

Query: 424 DPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET      
Sbjct: 298 DPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGG 356

Query: 478 GEKKMSVDC 486
           G  +   D 
Sbjct: 357 GRVRPFDDR 365


>gi|257459226|ref|ZP_05624345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis
           RM3268]
 gi|257443611|gb|EEV18735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis
           RM3268]
          Length = 436

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 211/473 (44%), Gaps = 65/473 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +S   +AG  F+     +   +  F P+A  +GA+ I +  A  L    + I     
Sbjct: 10  ITDNSAECEAGCFFM-----RTSANAKFEPEAAQKGAQIISIVQAKELLKIDSRI----- 59

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                                    I+ +TGT+GK++ A+ +       G   F  G + 
Sbjct: 60  ------------------------KIVGITGTNGKTTTAAAIYSTLLDLG---FSCGLSG 92

Query: 152 TISSFAQDNRLTTPS--PIYLAKALSYLSS---QGVTHVSVEASSHGLDQHRLDGIKLIA 206
           T  +F  + R+         + K +SYL     QG  +  +E SSH + Q+R++G++   
Sbjct: 93  TRGAFINERRIDEKGLTTSSVFKTMSYLYEAGKQGCEYFVMEVSSHAIAQNRIEGLEFAL 152

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+DYH + Q Y   K   F +    ++P +I ADD + K            
Sbjct: 153 KIFTNLSQDHLDYHGSMQEYAAVKSSFFAD----DAPKLINADDGHIKF-------DPAN 201

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            L+ G +           +       +    G +      L GEF +YN   A      +
Sbjct: 202 ALTYGIKNAASFGVSGYGLKGGIDALVRTPNGDNAQLQSDLIGEFNLYNLTAAFAAVKIL 261

Query: 326 -GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             + +  + + L     V GR + V   ++   + VD+AHT + +E +L  +R   SG I
Sbjct: 262 TKLPNEKIAKALANFGGVEGRVQIV---NKDPLVIVDFAHTPDGIEKVLNALR--ASGEI 316

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441
           I VFG GGDRD GKRP MG IA   A I IVT DNPRSE+P++I  +I  G+      ++
Sbjct: 317 IAVFGAGGDRDHGKRPKMGAIAEHFAKICIVTSDNPRSENPDEIIEQICAGMRRKDKILK 376

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +R EAI  A+++    +++ + GKG ET   +  G K    D  ++ E++ 
Sbjct: 377 ITDRKEAIARALDLAKNGEMIAILGKGDETYQEIK-GVKHPFSDKQVVSELVA 428


>gi|121612468|ref|YP_001001284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167006178|ref|ZP_02271936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249826|gb|EAQ72785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 427

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 130/446 (29%), Positives = 203/446 (45%), Gaps = 61/446 (13%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  +A+ +GA+ I V+    L      I                              
Sbjct: 30  AKFHARALEKGAKIIDVNECKKLLKIDEKI-----------------------------Q 60

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 61  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 117

Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL     +      +E SSH L Q+R++G+  +A  FTN+ +DH+D+H T + Y  AK 
Sbjct: 118 EYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFVAKIFTNITQDHLDFHGTFENYKKAKE 177

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 178 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGISA 226

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA+     +   D   + + +     V GR E V 
Sbjct: 227 IVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELIKPDLKDLEKAISGFGGVCGRVEQVA 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ KRP+MGKI    A
Sbjct: 287 KG-----VIVDFAHTPDGIEKVLDT---LKNKQLIVVFGAGGDRDKTKRPLMGKIVEHFA 338

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GK
Sbjct: 339 KIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGK 398

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G ET   +  G K    D  ++ EIL
Sbjct: 399 GDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|315639117|ref|ZP_07894284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
 gi|315480821|gb|EFU71458.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
          Length = 428

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 205/469 (43%), Gaps = 67/469 (14%)

Query: 31  NEVSSDSRHIQAGWIFV-AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             ++ +S   +    F+      K     F  +A+ +GA+                    
Sbjct: 8   TFITDNSSECEKDCFFLSCFQNAK-----FKDEAVKKGAK-------------------- 42

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I+ V+ T+K L +            I+ +TGT+GK++ A+ +  I    G      G 
Sbjct: 43  --IIDVEETKKLLGI-------DETIKIIGITGTNGKTTTAAAIYSILLDLGFKC---GL 90

Query: 150 TSTISSFAQDNRLTTPS--PIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKL 204
             T  +F  D ++   S     + K L YL      G     +E SSH L Q+R++G++ 
Sbjct: 91  CGTRGAFINDEKIDEKSLTTSPILKTLEYLQKATLKGCEFFVMEVSSHALVQNRIEGLEF 150

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL +DH+D+H + + Y  AK   F +    ES   I  D  +    +K A    
Sbjct: 151 AAKIFTNLTQDHLDFHGSFENYKKAKESFFTD----ESLKFINKDAFHINFNVKNA---- 202

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               + G +    +  K  A+ N+    +  + + F     L G F +YN L A+     
Sbjct: 203 ---YTYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYNLLAASACVNE 259

Query: 325 IGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +     A +   +     V GR E +        + VD+AHT + +E +L    ++ +  
Sbjct: 260 LVKPNLADLERAISGFGGVCGRVEKIVEG-----VIVDFAHTPDGIEKVLD---SLKNKN 311

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           +IVVFG GGDRD+ KR +MGK+    A  AI+T DNPRSED   I  EI+ G       +
Sbjct: 312 LIVVFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEILQGFEDKNTPL 371

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
              NR  AI  A+E+  + D++++ GKG ET   +  G K    D +++
Sbjct: 372 MIENRELAIYKALELKKEDDLVIILGKGDETYQEIK-GVKYPFSDKEVV 419


>gi|57505613|ref|ZP_00371540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter upsaliensis RM3195]
 gi|57016160|gb|EAL52947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter upsaliensis RM3195]
          Length = 428

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 205/469 (43%), Gaps = 67/469 (14%)

Query: 31  NEVSSDSRHIQAGWIFV-AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             ++ +S   +    F+      K     F  +A+ +GA+                    
Sbjct: 8   TFITDNSSECEKDCFFLSCFQNAK-----FKDEAVKKGAK-------------------- 42

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I+ V+ T+K L +            I+ +TGT+GK++ A+ +  I    G      G 
Sbjct: 43  --IIDVEETKKLLGI-------DKTIKIIGITGTNGKTTTAAAIYSILLDLGFKC---GL 90

Query: 150 TSTISSFAQDNRLTTPS--PIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKL 204
             T  +F  D ++   S     + K L YL      G     +E SSH L Q+R++G++ 
Sbjct: 91  CGTRGAFINDEKIDEKSLTTSPILKTLEYLQKATLKGCEFFVMEVSSHALVQNRIEGLEF 150

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL +DH+D+H + + Y  AK   F +    ES   I  D  +    +K A    
Sbjct: 151 AAKIFTNLTQDHLDFHGSFENYKEAKESFFTD----ESLKFINKDAFHINFNVKNA---- 202

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               + G +    +  K  A+ N+    +  + + F     L G F +YN L A+     
Sbjct: 203 ---YTYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYNLLAASACVNE 259

Query: 325 IGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +     A +   +     V GR E +        + VD+AHT + +E +L    ++ +  
Sbjct: 260 LVKPNLADLERAISGFGGVCGRVEKIVEG-----VIVDFAHTPDGIEKVLD---SLKNKN 311

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           +IVVFG GGDRD+ KR +MGK+    A  AI+T DNPRSED   I  EI+ G       +
Sbjct: 312 LIVVFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEILQGFEDKNTPL 371

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
              NR  AI  A+E+  + D++++ GKG ET   +  G K    D +++
Sbjct: 372 MIENRELAIYKALELKKEDDLVIILGKGDETYQEIK-GVKYPFSDKEVV 419


>gi|149917684|ref|ZP_01906180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
 gi|149821466|gb|EDM80866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
          Length = 483

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 219/468 (46%), Gaps = 25/468 (5%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99
           + AG + V I  +   G      A+AQGA A++        D      S+  I+ V    
Sbjct: 24  VGAGDVAVWIPSHPRMGLTRPEDALAQGAAAVLT-------DDRELAASDPRIVFVPALA 76

Query: 100 KFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSF 156
             +S  A+  YG       ++AVTGT GK+S   F  Q+  R GL +  +G         
Sbjct: 77  DEVSGLAASFYGHPGRALKVVAVTGTCGKTSTTFFTAQLADRVGLGAAVMGTLGMGRLGD 136

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
            +D+  TTP    L + L+    +G+  V++EASS GL+  RL G+ + AG FT LGRDH
Sbjct: 137 LRDSGHTTPQHAMLQRELARYVDEGLGLVAIEASSAGLEMDRLGGVPIDAGVFTMLGRDH 196

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +D H+T +AY  AK RLF+   P+   A++ ADD   +   +R        +  G + + 
Sbjct: 197 LDRHRTMEAYAAAKWRLFDAYAPE--FAVLGADDPTGEAWARRLRERCAVTV-FGAEPRP 253

Query: 277 I------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                  H++ +        V ++    +        G FQ +N   A      +G+   
Sbjct: 254 ELDLPRVHIEGLEQQRAGLGVRLASTWGEAAVSIRALGAFQAHNLAAALATLARLGVPWP 313

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFG 389
            ++   E L   PGR E            +DYAHT  SL   L + R +  G R+  VFG
Sbjct: 314 ELVVACEGLSGPPGRMEPYAAPGT-PLCLIDYAHTPESLTFALDSARALAPGGRVWCVFG 372

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
           CGG RD GKR  MG  A   AD+ +VT DNPR EDPE I A ++ G+         G R 
Sbjct: 373 CGGGRDSGKRGEMGAAAEGSADVVVVTTDNPRHEDPEAIAAAVVAGMETPSRARVIGERG 432

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AI  A++    +DV+VVAGKGHE V I  +   + S D D +   +G
Sbjct: 433 QAITRALDEAAPEDVVVVAGKGHERVQIFADRRVEWS-DRDFVAAYMG 479


>gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi]
          Length = 523

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 123/530 (23%), Positives = 203/530 (38%), Gaps = 57/530 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  K     +   S+         ++ ++ DSR ++ G +F A+ G    G  +I  AI 
Sbjct: 2   LYRKPITVCLASCSVQETHGSACDVSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAID 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
            GA AIV            T         V + R  LS  A+  Y        ++ VTGT
Sbjct: 62  AGACAIVHDCPLD------TYVVGVYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GKSS  SF+ Q+ +  G     I                  TTP  + + + L+ +   
Sbjct: 116 EGKSSTVSFIAQLLRLCGKRVGFISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREH 175

Query: 181 GVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 +EASSHGL     RL  +        N+  +H+++H + + Y   K  +F  L 
Sbjct: 176 SCEFAVIEASSHGLSTRTARLQDVAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALD 235

Query: 239 PKE---------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-- 287
             +         S  +++A+DA S    + A +  C     G   +      +  +    
Sbjct: 236 AHDHIKDGRRVPSFGVLWAEDA-SAVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTL 294

Query: 288 ---------KQQVTISV------------EGKDFDFLFPLPGEFQVYNALVAAGLCIA-I 325
                     Q + +              +    D   PL G F   N   +  +    +
Sbjct: 295 LLVQTLPQISQALRLRFVLSTVQEPAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGLL 354

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI---LKNIRTITSG 382
           G   A   +H++ +  + GR + V    +   + +DYAHT +S E I   L         
Sbjct: 355 GTSLAAFAQHVQYVQPIQGRMQRVDM-GQDFEVLIDYAHTPSSFEEILPPLAARVRARKR 413

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------ 436
           R++V+FG  G+RD  KR + G IA   A + ++TD++PR EDP  I   I  G       
Sbjct: 414 RMLVLFGSAGERDTQKRAMQGAIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLG 473

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                  +R+ A+R    +   QD++++ GKGHE   I  +  +    + 
Sbjct: 474 KTLFLIPDRVAALRHIFSLARAQDLVLLLGKGHEHSIIYAHTVQPYDEER 523


>gi|255321741|ref|ZP_05362896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
 gi|255301221|gb|EET80483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
          Length = 430

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 126/435 (28%), Positives = 193/435 (44%), Gaps = 36/435 (8%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A    V +A + +  +A       I+ +   ++ L +            I+ +TGT+GK+
Sbjct: 19  AGCCFVKTATNAKFEAAAEAKGAKIINLAECKRLLGI-------DENIKIIGITGTNGKT 71

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKALSYL---SSQGV 182
           + A+ +       G   +  G   T  +F    R+   +     + + LSYL   S +G 
Sbjct: 72  TTAALICATLLNLG---YGCGLCGTRGAFINGERIDDKALTTSEILRTLSYLKAASERGC 128

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +EASSH + Q R++ +      FTNL +DH+DYH T + Y   K   F +    ++
Sbjct: 129 EYFVMEASSHAIAQKRIESLDFAMKIFTNLTQDHLDYHGTFEEYARVKSEFFAD----DA 184

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           P +I  DD    +            L+              ++       +         
Sbjct: 185 PKLINIDDRGGIKF------NPANALTYALHANADFAPGEYSLEGGIHCALKTPRGQMAL 238

Query: 303 LFPLPGEFQVYNALVAAG-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              L GEF +YN + AA  +          +     K   V GR E V   SR   + VD
Sbjct: 239 SSNLHGEFNLYNLIAAASCVATLTDRPLEQIALAASKFDGVEGRMEVV---SREPLVIVD 295

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +AHT + +E +L  +R     +I+ VFG GGDRD+ KRP MG IA   A   +VT DNPR
Sbjct: 296 FAHTPDGIEKVLNALR---HRKIVAVFGAGGDRDRTKRPKMGAIAQKYAHRLVVTSDNPR 352

Query: 422 SEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           SE+PE I AEI  G+          NR EAI+ A+E L + ++LV+ GKG ET   +  G
Sbjct: 353 SEEPETIIAEICGGLEMNERVKCIANRKEAIKYALESLAQDEILVILGKGDETYQEIK-G 411

Query: 479 EKKMSVDCDIIREIL 493
            K    D  ++RE+L
Sbjct: 412 VKYPFSDKQVVRELL 426


>gi|116617847|ref|YP_818218.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096694|gb|ABJ61845.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 490

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 123/507 (24%), Positives = 222/507 (43%), Gaps = 41/507 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L     ++   L++   +      +   + +  D+R +Q   +FV I G  +    ++
Sbjct: 1   MRLTTETIQNL--LVDHNLLLDAPDVDMTFDFLHYDTREVQKNTLFV-IKGAFK--RAYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
                 G   ++  +          I  + P   V N +K LSL +   +    E +   
Sbjct: 56  DNV--HGITGLITETK---------IDVDLPQWQVTNVQKALSLLSMAFFDYPQEQLWIG 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQI-----GPTSTISSFAQDNRLTTPSPIYLAKA 173
           A TGT GK++ A F   + + +  +   +       T   +S  + + LTTP    L K 
Sbjct: 105 AFTGTKGKTTAAYFAYTMLKEATNNHTALFSTVDRITGPQASDKKKSDLTTPESYELFKD 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           +  +   G+TH+ +E SS    ++R+ G++   G+F N+  DHI    H T + Y   K+
Sbjct: 165 MRQVVDNGMTHLVMEVSSQAYLKNRVYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKL 224

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L    L      I+ A+  +   +   A  A  +V +   Q   +   +  AIH  +  
Sbjct: 225 ML----LDHSDEVIVNAETDHFDTIYTYAKKAHHKVYTYSRQ---MFTSEESAIHESRFT 277

Query: 292 TISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +  E  +    +   +PG+F   NA+ A  L    G+    +++ L+++  +PGR   +
Sbjct: 278 VVKSEFNEMLGSYRLNVPGDFNESNAMAAMMLVSFAGVKHQAMVKGLDEVF-IPGRMLSL 336

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             N  G   +VDYAH   S++ +L        +GR++VV G  G++   +R   G +  D
Sbjct: 337 PINGHGVA-FVDYAHNFVSMQALLSFAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSD 395

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           LAD+  +T D+P+ E+P  I  EI   I         + NRI AI  AI   N+ D+++V
Sbjct: 396 LADVVYLTADDPQFENPLDIAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVIV 455

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIRE 491
           AGKG +    +   +     D  ++++
Sbjct: 456 AGKGEDPYQKIDGVDVPYIGDYAVVKQ 482


>gi|239917866|ref|YP_002957424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413640|ref|ZP_06245382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839073|gb|ACS30870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
          Length = 585

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 149/515 (28%), Positives = 228/515 (44%), Gaps = 58/515 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR ++ G ++VA+ G +  G  F   A+  GA  ++  +A      +    ++
Sbjct: 55  VTGVSLDSRVVRPGDLYVAVPGARAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 113

Query: 90  TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L VD  R      A+R+YG        ++ VTGT+GK++ +     + +  G  S  
Sbjct: 114 VPVLEVDAVRTAAGTVAARVYGGGGDAGPRLVGVTGTNGKTTTSFLSAALLEALGRRSGI 173

Query: 147 IGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +   +  + LTTP    L   ++ +  + V    +E SSH +   R+ G++  
Sbjct: 174 VGTILIRAGEREVPSTLTTPEATQLHALMALMREEQVDTAVMEVSSHAVAYQRIAGLRYA 233

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHN 262
              FTNL +DH+D H + Q YF AK  LF+    +   A+I  D          M RA  
Sbjct: 234 VAGFTNLTQDHLDMHGSMQEYFAAKAGLFDP--ARTDHAVITLDGGEGPRWGVAMARAAG 291

Query: 263 AGCRVLSVGYQG--------------KFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPL 306
           A    L++G                     + ++       + T+     G++      L
Sbjct: 292 APVTTLALGPAAPTPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGRELRASVGL 351

Query: 307 PGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLH--------VVPGRFEFVGTNSRGGR 357
           PG F V N AL    +  A+G +    L  +  +          VPGR E VG       
Sbjct: 352 PGRFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGRMEVVGREPD--- 408

Query: 358 IYVDYAHTSNSLEMILKNIRT-----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             VD+AH  + +   L+++        T GR ++VFG  GDRD+ KRP+MG IA   AD+
Sbjct: 409 AVVDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAGDRDRDKRPVMGAIAARAADV 468

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--------------FIEKGNRIEAIRTAIEMLNK 458
            IVTDD P SEDP  IRA I+ G                   E  +R  AIR A+E+   
Sbjct: 469 VIVTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRTVVIEEVADRFAAIRRAVELAGP 528

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           QD +++AG+GHET     +GE     D   +RE L
Sbjct: 529 QDGILLAGRGHETTMDY-DGELVPLDDRVALREAL 562


>gi|81427895|ref|YP_394894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564766|sp|Q38YZ5|MURE_LACSS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|78609536|emb|CAI54582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 513

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/493 (23%), Positives = 200/493 (40%), Gaps = 47/493 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR + A  +F    GN     +F+  A   GA   V        +         
Sbjct: 32  TGIAYDSRKVTADTLFFC-KGNFRP--VFLTNAKEAGAVTYVAEQPIVEGNGMNA----- 83

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L+V N +K +++ ++  Y    +++  +A TGT GK++ + F Q I Q +      + 
Sbjct: 84  --LIVTNVQKAMAVLSAAFYDYPQDDLFIVAYTGTKGKTTASYFTQSILQDATNKKTALF 141

Query: 149 PT--STISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            T    +    +D      TTP  + L   +      G+TH+ +E SS    ++R+ G+ 
Sbjct: 142 STIDRVLGPKPEDRFKSDLTTPESLDLFHDMRQAVENGMTHLVMEVSSQAYKKNRVYGLT 201

Query: 204 LIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA- 260
              G F N+  DH+    H   + Y + K+    +LL      +I A      +V   A 
Sbjct: 202 FDVGFFLNISPDHVGPNEHPNFEDYLHCKL----QLLVNSRHCVINAQTQNFGDVYAAAT 257

Query: 261 ----------------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                             A    +   ++ + + L +               G   D+  
Sbjct: 258 TTTEPENIYLFADTSYQPAQPVNIDFRFENQAMTLAESRFKVTAVSKKAIQLGVSGDYQL 317

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+F   NA  A       G D     + + +L  +PGR E +     G ++YVDYAH
Sbjct: 318 RLIGDFNESNATAAIIGAALGGADLIAAQQGIRRLQ-IPGRMETLAVEGHG-QVYVDYAH 375

Query: 365 TSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S++ +L    +     +++VV G  GD+   +R    ++  + AD AI+T D+P  E
Sbjct: 376 NYASMKALLSFLQKEYNQPKLLVVVGSPGDKGVSRRAGFAQVLNEYADRAILTTDDPGYE 435

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP  I AEI+ GI         + +R  AI+ AIE     D++V+A KG +    V   +
Sbjct: 436 DPATIAAEILAGIDQDKVDTTVEIDRATAIKQAIEESQPGDIVVLAAKGADAYQKVRGVD 495

Query: 480 KKMSVDCDIIREI 492
                D  I +++
Sbjct: 496 TPYPTDMVIAKQV 508


>gi|222823156|ref|YP_002574729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter lari RM2100]
 gi|222538377|gb|ACM63478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter lari RM2100]
          Length = 427

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 202/469 (43%), Gaps = 59/469 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +  +S+  +    F  +  ++ +   F  QA+ + A+ I ++   SL +    I    
Sbjct: 8   TFICDNSKECEKDCFF--LKTSQNE--KFTHQALEKQAKIISIAECKSLLNIDENI---- 59

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
                                     I+ +TGT+GK++ A  +  I    G     +G  
Sbjct: 60  -------------------------KIIGITGTNGKTTTAGAIYSILLDLGYKCALMGTR 94

Query: 151 STISSFAQDNRLTTPSPIYLA--KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +  +          +   L   + LS  S Q    + +E SSH L Q+R++G++  A  
Sbjct: 95  GSFINDKNITPKGLTTAPILQTLEILSLASEQKCEFLIMEVSSHALVQNRIEGLEFKAKI 154

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+D+H + + Y  AK   F +    E    I  D +     +K          
Sbjct: 155 FTNLTQDHLDFHGSFENYKQAKESFFTD----ECMKFINKDASAIAFNVKN-------SF 203

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           S G +    +  K  A+ N  +  ++    +F     L G F +YN L A+     +   
Sbjct: 204 SYGIENPSYYHIKAYALKNGIEAVVNFGKNNFTIESSLVGLFNLYNLLAASACVNELVRP 263

Query: 329 -SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               + + +     + GR + V  +     + VD+AHT + +E +L     +    +IVV
Sbjct: 264 NLKELEKAISNFGGIEGRMQVVAKD-----VIVDFAHTPDGIEKVLDA---LKYKNLIVV 315

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGN 444
           FG GG+RD+ KRP+M KIA   A   I+T DNPR E+P  I  +I+ GI        + +
Sbjct: 316 FGAGGNRDKTKRPLMAKIAKYYAKKLIITSDNPRFEEPMDIINDILSGIKKDENVFVECD 375

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R +AI+ A+E  N  + +V+ GKG ET   +  G K    D +++ EIL
Sbjct: 376 RKKAIKKALEFKNDDEFVVILGKGDETYQEIK-GVKYPFNDKEVVLEIL 423


>gi|227432271|ref|ZP_03914266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351970|gb|EEJ42201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 490

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 122/507 (24%), Positives = 219/507 (43%), Gaps = 41/507 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L     ++   L+    +      +   + +  D+R +Q   +FV I G  +    ++
Sbjct: 1   MRLTTETIQNL--LVYHNLLLDAPDVDMTFDFLHYDTREVQKNTLFV-IKGAFK--RAYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
                 G   ++             I  + P   V N +K LSL +   +    E +   
Sbjct: 56  DNV--HGITGLITEKK---------IDVDLPQWQVTNVQKALSLLSMAFFDYPQEQLWIG 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQI-----GPTSTISSFAQDNRLTTPSPIYLAKA 173
           A TGT GK++ A F   + + +  +   +       T   +S  + + LTTP    L K 
Sbjct: 105 AFTGTKGKTTAAYFAYTMLKEATNNHTALFSTVDRITGPQASDKKKSDLTTPESYELFKD 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           +  +   G+TH+ +E SS    ++R+ G++   G+F N+  DHI    H T + Y   K+
Sbjct: 165 MRQVVDNGMTHLVMEVSSQAYLKNRVYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKL 224

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L    L      I+ A+  +   +   A     +V +   Q   +   +  AIH  +  
Sbjct: 225 ML----LDHSDEVIVNAETDHFDTIYTYAKKTHHKVYTYSRQ---MFTSEESAIHESRFT 277

Query: 292 TISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +  E  +    +   +PG+F   NA+ A  L    G+    +++ L+++  +PGR   +
Sbjct: 278 VVKSEFNEMLGSYRLNVPGDFNESNAMAAMMLVSFAGVKHQAMVKGLDEVF-IPGRMLSL 336

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             N  G   +VDYAH   S++ +L        +GR++VV G  G++   +R   G +  D
Sbjct: 337 PINGHGVA-FVDYAHNFVSMQALLSFAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSD 395

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           LAD+  +T D+P+ E+P  I  EI   I         + NRI AI  AI   N+ D+++V
Sbjct: 396 LADVVYLTADDPQFENPLDIAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVIV 455

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIRE 491
           AGKG +    +   +     D  ++++
Sbjct: 456 AGKGEDPYQKIDGVDVPYIGDYAVVKQ 482


>gi|307700879|ref|ZP_07637904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
 gi|307613874|gb|EFN93118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
          Length = 516

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 135/511 (26%), Positives = 232/511 (45%), Gaps = 32/511 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ L + D   + + +          ++     D+R ++ G +F+A+ G    G  F P 
Sbjct: 14  LQALAWVDTAAIADAVG-GTRHGPVGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPD 72

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120
           AI++GA+A++  +A              P++ V +        A+  +G       +  V
Sbjct: 73  AISRGAKAVLTDAAG----LDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++    ++ +  R G  +  +G     I   +  + +TTP    +    +   +
Sbjct: 129 TGTNGKTTTTYLLRHLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVA 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  + +E SSH L   R+D ++     F NL  DH+D+H + + YF  K  LF E   
Sbjct: 189 AHLEDLVLEVSSHALGLGRVDPLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFTER-- 246

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +    +I  DD + + + ++    G        + G+   +                 + 
Sbjct: 247 RSDRQVIIVDDDWGRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAF 306

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL---EHLEKLHV------VPGRF 346
           +GK       +PG F   N  +A  + +  G+  +  +   + L  L        VPGR 
Sbjct: 307 DGKTASVQVLMPGRFNAVNTALAI-VMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRM 365

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +   +   R+ VD+AH   +L+ +L+ +R  T+GR+ +VFG  G RD  KRPI+G+IA
Sbjct: 366 ELI---ANQPRVIVDFAHNPGALKSLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIA 422

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
            +LAD   +TDD+P  EDP+KIRAE+  G+      ++E   R  AI+ AI+    QD +
Sbjct: 423 GELADFTYLTDDDPHEEDPDKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQEAKPQDTV 482

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V+AG+GHET+     G   +  D    R  L
Sbjct: 483 VIAGRGHETLQETPVGAIDL-DDRVEARAAL 512


>gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 518

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 126/525 (24%), Positives = 218/525 (41%), Gaps = 56/525 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           L+ L+    PEL  + +       + +   I+ ++ +S+ +  G IFVA  G K D H +
Sbjct: 13  LKKLLQNTSPELFTEFADLGTTGTDIEGVTISGITDNSKEVTPGKIFVACQGTKVDAHDY 72

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +AIA GA  +++  A  +        S  P   V N RK L+  AS  Y      ++ 
Sbjct: 73  IEEAIANGASTVILERADYIDKVK---DSAIPYFKVRNGRKTLAKLASTFYDHPSHRLIV 129

Query: 120 VTGTSGKSSVAS--FVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176
              T       +   +  I  + G+ S  IG     I+    D++LTTP    L   +  
Sbjct: 130 TGITGTNGKTTTTTLIDYIINQLGVKSGLIGTVNCKINGEEFDSKLTTPPATELYSLIEK 189

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + V +++ E SSHGL Q R+  I       TN+  DH+D+H +   YF +K + F+ 
Sbjct: 190 MVQKEVKYLTKEVSSHGLKQDRVSAINFDIAGITNISYDHMDFHDSWDDYFKSKTKFFQM 249

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTIS 294
           L P +S +++ ADD  +   +        +V++ G    G  I  + V     +   T  
Sbjct: 250 LSP-DSISVLNADDPNA---ISMGDKTRSKVITYGISSPGAMITAENVDLKPFETSFTYQ 305

Query: 295 VEGK------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           ++ +              +    +PG+  +YN L+A  +CI  G D   V++  E+   +
Sbjct: 306 IKEELPTVTNKPVRPQSHNLKIRMPGKHNIYNTLLAISVCIMAGFDPEQVIKTAEQFPGL 365

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR------DQ 396
             R E +  NS    I  D AH   S+  + + I  +   R+++VF   G R      + 
Sbjct: 366 FRRLEVIYKNS--FTIIDDCAHNPASIRSVFETISQLPFNRLVIVFAIRGSRGDQINLEN 423

Query: 397 GKRPIMGKIALDLADIAIVTDDNPR--------SEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            +R +     L + ++ I T  +          SE    +      G P F    N  E 
Sbjct: 424 SQRLVKWVNHLPVRELIITTSKSHAAPTNQVHSSEQTAFLSPLKTSGTP-FKFIHNLEET 482

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I TA+  + + D+L++ G      + +  G        +I+R  L
Sbjct: 483 IETALNEVKQGDLLMILGP-----YAINEG-------QEIVRNYL 515


>gi|170017365|ref|YP_001728284.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
 gi|169804222|gb|ACA82840.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
          Length = 516

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 123/513 (23%), Positives = 220/513 (42%), Gaps = 41/513 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL     +      N L   P+ +   + + +  D+R ++   +FV + G       ++
Sbjct: 17  MKLTSKTIEQLLSSHNLLVSQPVTY--HEFSFLHYDTRQVEPETLFV-VKGAFRP--KYL 71

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             A  QG   IV  S          +  + P   V N +K LSL +   +    +N+   
Sbjct: 72  ENA--QGITGIVSES---------QLPVDLPQWQVTNVQKALSLLSMAFFDYPQKNLWIG 120

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQI-----GPTSTISSFAQDNRLTTPSPIYLAKA 173
           A TGT GK++ A     I + +  +   +       T   +S  + + LTTP    L K 
Sbjct: 121 AFTGTKGKTTAAYMTYNILKAATDNHTALFSTVDRITGPKASDRKKSDLTTPESYELFKD 180

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           +  +   G+TH+ +E SS    + R+ G++   G+F N+  DHI    H   + Y   K+
Sbjct: 181 MRRVVDNGMTHLIMEVSSQAYLKQRVYGLRYQVGAFLNISPDHIGPNEHPNFEDYLAHKL 240

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQ 289
            LF+         I+ A+  +  E+M  A     ++ +     +G         +  ++ 
Sbjct: 241 MLFDH----SDKVIVNAESDHLSEIMTHAKKGHDKIYTYSNAEKGGEYTFTSQSSAIHES 296

Query: 290 QVTI---SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           Q+T+    +      +   LPG+F   NAL A  +    G     +++ L+ +  +PGR 
Sbjct: 297 QLTVQASDLSEMAGAYRLNLPGDFNESNALAALIMAALAGAKHEAMVKGLDTVF-IPGRM 355

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
             +   + G   +VDYAH   S+  +LK        G++IVV G  G++   +R   G++
Sbjct: 356 LSLPIPNHGVA-FVDYAHNYASMHALLKFAQSQYPDGKVIVVVGSPGNKGVSRRADFGRV 414

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDV 461
             +LAD+  +T D+P+ E P+ I  EI   I         + +RI AI  A+      D+
Sbjct: 415 VSELADVVYLTADDPQFESPKTIADEIAAHINNPKLDVHFEMDRIAAINQALLAARDNDI 474

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           ++VAGKG +    V   ++    D  +++  + 
Sbjct: 475 VIVAGKGEDPYQKVNGVDEPYIGDYAVVKNFVA 507


>gi|167614201|gb|ABZ89704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 381

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 180/381 (47%), Gaps = 14/381 (3%)

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+G ++V   +  +    G  +  +G             + TT S I++   LS +  + 
Sbjct: 1   TNGTTTVTQLINLLSNLLGQKTATMGTLGNGFHDNLYPTKNTTSSSIFIHSFLSQVYKKK 60

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              +++E SSHGL Q+R+  I      FTNL +DH+DYHQ  + Y  AK  LF +   + 
Sbjct: 61  AKLITMEVSSHGLIQNRVKNIPFYITIFTNLTQDHLDYHQNMEQYEAAKWLLFSK--HQV 118

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISV 295
              I+ A+D Y K+ +K+  N     +++       Y  K+++   +   +N   +    
Sbjct: 119 QKIILNANDKYGKKWLKKLFNYYTVAVTIKNSIQKKYSTKWLNATNIKYYNNYVNIHFES 178

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +    L G+F V N L++    + +G   + ++    K+  + GR +    N++ 
Sbjct: 179 SWGSSEISSCLIGDFNVINLLLSVAALLELGHALSDIVNICNKVQPINGRMQIFTKNNKP 238

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I  DYAHT ++L+  L  IR      I  +FGCGG++D+ KR IMG IA  +++  I+
Sbjct: 239 IFII-DYAHTPDALQKTLNAIRLHYKRYIWCIFGCGGEKDKTKRAIMGSIAEKMSNQVII 297

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T+DNPR+E  + I  +I+ G           NR +AI  A        ++V+AGKGHE  
Sbjct: 298 TNDNPRNEKEQNIIQDILSGCQKKNQIFVIPNRKKAISYAYFKARYNHIIVIAGKGHEEK 357

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ N     S D   +  +L
Sbjct: 358 QIIRNRSIVYS-DKKTVLNLL 377


>gi|257062775|ref|YP_003142447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
 gi|256790428|gb|ACV21098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
          Length = 493

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/497 (24%), Positives = 213/497 (42%), Gaps = 27/497 (5%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++    +      E  +  ++ DSR  + G +FV        G  F PQ +    +A   
Sbjct: 1   MLADAGVQAQATGEATVQGMTIDSRKAEPGCLFVC------KGAAFKPQYLGGALDAGAA 54

Query: 74  SSAYSLQDFSATIR--SNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSV 129
           +        +   +     P +V D+ R+ ++L A+ ++ +     +++ +TGT GKS+ 
Sbjct: 55  AYLCDAAAEATLAQAYPQAPHIVTDDVRRAMALLAAVVFDRPDLKIDVVGITGTKGKSTT 114

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A  ++ I   +G     +G   T       ++  TTP    L + L+     G + + +E
Sbjct: 115 AYMMRSILIAAGQEPSILGSIDTDDGVEHFESHNTTPEAPDLWRHLANTVEAGRSRMVME 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAII 246
            SSHGL   R  G++   G F N+GRDHI    H T + YF +K++LF +       A++
Sbjct: 175 VSSHGLKYDRTLGVRFAIGCFLNIGRDHISPVEHPTFEDYFESKLKLFAQ----SRTALV 230

Query: 247 YADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLF 304
             +   + +V++ A  +       VG      +   +         T+    G+    + 
Sbjct: 231 NLNSDMADQVLEAAKASEQLVTFGVGRDDADWNAADLAVEPQGIAFTVCTPTGERERIVL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G F V NAL A  +   +G+    +   L  +  VPGR E V +        VDYAH
Sbjct: 291 GMAGLFNVENALAAVVMSRMLGVTWDDIRAGLAHVR-VPGRMEVVRSADGSVVALVDYAH 349

Query: 365 TSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S +    +++    GR +I VFG  G++ Q +R  + ++A   AD  I T+++P  E
Sbjct: 350 NELSFKTFFSSVKEEYPGRKVIAVFGAPGNKAQERRVTLPRVAAGFADHMIFTEEDPAYE 409

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM---LNKQDVLVVAGKGHETVHIVTN 477
             E I AE++   P         +R  A + A +M        V+ +  KG ET     +
Sbjct: 410 RVEDICAEMMASTPAGASAEVICDREAACKRAFDMAFEAENGAVVALLAKGDETRQHRGD 469

Query: 478 GEKKMSVDCDIIREILG 494
              ++  D  I REILG
Sbjct: 470 EFPEVKSDLAIAREILG 486


>gi|149184156|ref|ZP_01862479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848134|gb|EDL62461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 299

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/300 (35%), Positives = 153/300 (51%), Gaps = 13/300 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-----KESPAIIYADDAYSKEV 256
                  FTN+ +DH+DYH+T + Y +AK  LF +L       K   AII  DD  +   
Sbjct: 1   CDFDIAVFTNITQDHLDYHRTMEEYRSAKSLLFSQLGNSYDEKKLKYAIINNDDPSAGFF 60

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +   H+    V++ G  Q    + + +   HN    T+    +       L G F +YN 
Sbjct: 61  I---HSTAAHVVTYGVSQDADFYAEDIELRHNGSSFTMVTPSERIKMDIQLAGRFNIYNV 117

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L AA      G+    +   L+ ++ V GRFE V    +   + VDYAHT +SLE +LK 
Sbjct: 118 LAAAASANISGVPLKNIKAALQSINGVSGRFEQV-EAGQDFSVIVDYAHTPDSLENVLKT 176

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I TIT   +IVV GCGG+RD+ KRPIM +IA    D  + T DNPR+EDP  I A++  G
Sbjct: 177 IETITDENVIVVVGCGGNRDRTKRPIMAEIACKYGDQVVFTSDNPRNEDPNAIIADMTTG 236

Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +    +I   +R EAI  A+ +  K DV+++AGKGHET  I+ +       D +  +  +
Sbjct: 237 LKHTNYIVIIDRQEAINHAVSLAGKGDVVLIAGKGHETYQIIGDAVTS-FDDREAAKAAI 295


>gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 431

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/403 (28%), Positives = 188/403 (46%), Gaps = 13/403 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  +L +      E  I  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 32  LGELAARLGVQTPGAAE--ITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAAA 89

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSS 128
           ++   + + +       +  P+LV +N R  +   A+ +YG   +++L   +TGTSGK++
Sbjct: 90  VLTDESGAER----AAATGLPVLVTENPRGRMGELATEIYGHPGDDLLQIGITGTSGKTT 145

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G S+  IG     I      +  TTP    L    + +  +G   V++
Sbjct: 146 TAYLVEGGLKAAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGADAVAM 205

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF     +   A++ 
Sbjct: 206 EVSSHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFQAKAQLFTPR--RSREAVVN 263

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306
            DD Y + ++  A        + G+       + V    +    T +   G+      PL
Sbjct: 264 FDDEYGRRLVDEATVPVTTFSAEGHPDADWRAEDVEVGTHGSTFTAVGPAGERVRAQAPL 323

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       G+D     + +  +  VPGR E V    +     VDYAH +
Sbjct: 324 PGPFNVANTLAAVVTLAVAGLDPQTAADGIAAVPGVPGRLERVDA-GQPYLAVVDYAHKT 382

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +++E +L+++R +T G++ +V GCGGDRD+ KR  MG  A   
Sbjct: 383 DAVESVLRSLRKVTKGKVHIVLGCGGDRDRTKRGPMGAAAARN 425


>gi|50955154|ref|YP_062442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648714|sp|Q6AE59|MURE_LEIXX RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|50951636|gb|AAT89337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 514

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 133/483 (27%), Positives = 218/483 (45%), Gaps = 28/483 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++   +  S  ++ G ++V + G    G  +   A   GA A++               
Sbjct: 37  VEVTGAALASSAVEPGDLYVGVPGRNAHGAAYAAAAAEAGAVAVLT----DGDGADLAAA 92

Query: 88  SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  PI+V  + R  L   A+ ++    +   +  VTGT+GK+SV   +  I  + G+ + 
Sbjct: 93  AGLPIVVTADPRAALGAVAAWIHRTEDNAATLFGVTGTNGKTSVVYLLYAILGQLGIVA- 151

Query: 146 QIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             G TST    I   A  + LTTP    L   L+ +  +GV   ++E S+  L +HR+DG
Sbjct: 152 --GLTSTAERRIGEHAITSTLTTPEATELHALLARMREEGVRAAAIEVSAQALSRHRVDG 209

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I+     FTNL  DH+D +     YF AK+ LF+    +     +  D  +   +++++ 
Sbjct: 210 IEFDVAGFTNLSHDHLDDYTAMPDYFAAKLELFQPDRARRGVVTV--DSEWGHRLVEQSR 267

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
                + SV        +  +     +    +   G    +   PL G +   NA +A  
Sbjct: 268 IPVTTLSSVAGSEADWRVTVLEETLARTAFALEGPGGRLLETSVPLLGAYNASNAALAIV 327

Query: 321 LCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           + +  G D   +   LE+   +    PGR E + +  RG  +++DY HT ++    L  +
Sbjct: 328 MLVESGYDLDAIGAALERDGGIDAYIPGRAERL-SGDRGPVVFIDYGHTPDAFSSTLAAL 386

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T+GRI++VFG  GDRD  KR  MG IA   AD  ++TD +PR EDP  IRA ++ G 
Sbjct: 387 RRVTAGRIVMVFGADGDRDITKRAEMGAIAARGADAVVITDFHPRWEDPATIRAALLEGA 446

Query: 437 PGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
              +      E  +   A RTA+ +  + DV++ AG GHE       GE+      D  R
Sbjct: 447 RNAVPERDLYEVPDPRTAFRTALSLAGEGDVVLYAGPGHEDYQE-AAGERIPYSARDDAR 505

Query: 491 EIL 493
             L
Sbjct: 506 LAL 508


>gi|223038509|ref|ZP_03608803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
 gi|222880366|gb|EEF15453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
          Length = 430

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 122/401 (30%), Positives = 185/401 (46%), Gaps = 29/401 (7%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+     L       I+ +TGT+GK++ A+ +       G   +  G   T  +F  + R
Sbjct: 46  LAECKRLLDIDESIKIIGITGTNGKTTTAAAICATLLNLG---YGCGLCGTRGAFVNNER 102

Query: 162 LTTPS--PIYLAKALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
           +   +     + + LSYL   S +G  +  +E SSH + Q R++ +      FTNL +DH
Sbjct: 103 IDDKALTTSEILRTLSYLKAASERGCEYFVMEVSSHAIAQKRIESLDFAMKIFTNLTQDH 162

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +DYH T + Y   K   F +    ++P +I  DD    +            L+       
Sbjct: 163 LDYHGTFEEYARVKSEFFAD----DAPKLINIDDRGGIKF------NPANALTYALHANA 212

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG-LCIAIGIDSALVLEH 335
                  ++    + T+    +       L GEF +YN + AA  +          +   
Sbjct: 213 DFAPGEYSLEGGIRATLKTPRRQMALSSNLHGEFNLYNLIAAASCVATLTDRPLEQIARA 272

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             K   V GR E V   SR   + VD+AHT + +E +L  +R     +I+ VFG GGDRD
Sbjct: 273 AAKFDGVEGRMEVV---SREPLVIVDFAHTPDGIEKVLNALR---HRKIVAVFGAGGDRD 326

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTA 452
           + KRP MG IA   A   +VT DNPRSE+PE I AEI  G+          NR EAI+ A
Sbjct: 327 RTKRPKMGAIAQKYAHRLVVTSDNPRSEEPESIIAEICGGLEMNECVKCIANRKEAIKYA 386

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +E L + ++LV+ GKG ET   +  G K    D +++RE+L
Sbjct: 387 LESLTQDEILVILGKGDETYQEIK-GVKYPFSDKEVVRELL 426


>gi|291276864|ref|YP_003516636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
 gi|290964058|emb|CBG39898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
          Length = 434

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 195/434 (44%), Gaps = 40/434 (9%)

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-------------HPENILAVTGTSG 125
           L D S   +S+  +L V+ +R        R  G+              P  I+ +TGT+G
Sbjct: 17  LSDDSREAQSDEAVLFVETSRNAFFAEQMRKEGRDILHYRDLKEYFTFPAQIIGITGTNG 76

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ A+ +  +  ++G     +G           +   LTTP  + L + L+ L   G  
Sbjct: 77  KTTTANLIYHVLLKNGKKCAMLGTQGLFFGGKQIKPKGLTTPGILELYEDLALLHELGCE 136

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +E SSH + Q R+ G+   A   TN+  DH+DYH+T  +Y   K       L     
Sbjct: 137 VLVMEVSSHAISQDRIFGLDFAAKILTNITSDHLDYHKTLASYIATK----NAFLSDGGL 192

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            II  D+       + A+ +     S G +             +K   T+  +G+++   
Sbjct: 193 KIINKDE-------ENANFSPKNTKSYGVKNP---CDLQAKNFDKNHATLQYQGREYMLK 242

Query: 304 FPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            PL G   +YN +        + G++   +L  L+    V GR E V    +   + VD+
Sbjct: 243 MPLYGLHNLYNIMACVLCVRELFGLEMEQILSSLQDFGGVSGRMEVVC---QNPMVIVDF 299

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + +E IL+         + VVFG GGDRD+ KRP+MG +    A    VT DNPRS
Sbjct: 300 AHTHDGIEKILQ---GFLGQSLSVVFGAGGDRDRSKRPLMGGVVRKYAKKIYVTSDNPRS 356

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP  I  +I+ GI    G +   +R EAI+ A++     ++L V GKG ET  I+ +  
Sbjct: 357 EDPMSIIRDILEGIEDREGVVVLPDRYEAIKKALDHQEPGEILFVLGKGDETHQILADRV 416

Query: 480 KKMSVDCDIIREIL 493
                D  +IRE+L
Sbjct: 417 VD-FDDRMVIRELL 429


>gi|160915595|ref|ZP_02077806.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
 gi|158432715|gb|EDP11004.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
          Length = 484

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 138/486 (28%), Positives = 227/486 (46%), Gaps = 27/486 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F +L+ ++ +       R +  +S DSR ++   +FVAI          I +A+ +GA  
Sbjct: 15  FTDLLAKVGVSCKDS--RIVRGISDDSREVEQDMLFVAIKATAMK-KEHILEALTKGAV- 70

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSV 129
           ++               ++  I    + ++ L L    LYG++     +AV+GT+GK+SV
Sbjct: 71  VLCEK---------QPFADANIYEAASLKQKLILLLDTLYGRYEACQCIAVSGTNGKTSV 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           AS++ Q+          IG       +   +   TTP  I LAK       + +TH+ +E
Sbjct: 122 ASYIAQLLYMQKARVMVIGTGFVKGETIFFETSNTTPGLIALAKYFDIARQKQITHIVME 181

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH + Q R+  I+  A  FTN+  DH+DYH T+  Y   K +L    L K    I  A
Sbjct: 182 VSSHAIAQERIARIRFDAVVFTNITADHLDYHITKTHYRFTKFKL-ANYLKKSGVIIYNA 240

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D  Y   ++   H    R +S G     I ++ V        +  S++G  +     L G
Sbjct: 241 DYEY---MLPLVHMQSHRCVSYGLGAAHIPIEHVVLSE--SDIRFSLQG--YKIRAHLLG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              VYN   A        ++   + E +EKL  V GR E V       ++++DYAHT+ +
Sbjct: 294 LMNVYNVAAALTFMRINDVEYEQLQEDVEKLRAVKGRLEVVYQGK--FQVWIDYAHTAAA 351

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L+ +L   + +  GR+I + GCGG+RD  KRPIM +IA+  +D+AI T DNPR E    I
Sbjct: 352 LKEVLSFAKQVAKGRVISIVGCGGNRDVKKRPIMAEIAVKYSDVAIYTSDNPRFERVCDI 411

Query: 429 RAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             ++            +R  AI+ A+++    D++V+ GKG E    +  G++    D  
Sbjct: 412 LKDMHAERFLNACVFEHRYYAIKHAVKIAQNSDIIVITGKGSEAFTSIY-GKQYPCNDAT 470

Query: 488 IIREIL 493
            ++++L
Sbjct: 471 WVKKLL 476


>gi|269956079|ref|YP_003325868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304760|gb|ACZ30310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 532

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 157/508 (30%), Positives = 240/508 (47%), Gaps = 37/508 (7%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L +     R++ +  V+SD+R + AG +FVA+ G +  G  F   A+A+GA A++    
Sbjct: 26  DLRVAGAAGRDQAVTSVASDNRVVAAGDLFVALPGARAHGAQFAADAVARGAAAVLTDDD 85

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
            +            P+LV    R  L   A+ +YG   E++   AVTGT+GK++    + 
Sbjct: 86  GAALLGDLA----VPVLVSPEPRAILGHVAAWVYGSPAEHLTTFAVTGTNGKTTTTYQLD 141

Query: 135 QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            + +  G +S  IG            ++LTTP    L   L+ +   GV  +++E SSH 
Sbjct: 142 HLLRALGFTSGLIGTVEMRAGDRVLPSKLTTPEAADLQALLAAMHEDGVRTLAMEVSSHA 201

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L  HR+DG++     FTNL +DH+D+H   Q+YF AK  LF     +    ++  DDA+ 
Sbjct: 202 LALHRVDGVRYGVAGFTNLSQDHLDFHGDMQSYFEAKALLFTPEHARRGVVVV--DDAWG 259

Query: 254 KEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQ 311
             + + A      + +V         +  V         T++  +G+       LPG F 
Sbjct: 260 LRMAEAAQVPVATLRTVPDGPAADWTVSDVEPHGTGTAFTVTHKDGRTLRTSTTLPGHFN 319

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFV----GTNSRGGRIYVDYA 363
           V NA +A  + +  G     V E L         VPGR E +    G  +   R+ VD+A
Sbjct: 320 VANAALALVMVLEGGAHLTDVAEALAASGGLAGVVPGRMEVIAAGTGAQAALPRVVVDFA 379

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H + +LE+ L  +R  T GR++VVFG  GDRD GKRP MG  A++ AD+ +VTDD+P  E
Sbjct: 380 HNTEALELALAALRPTTPGRLVVVFGATGDRDTGKRPAMGAAAVEGADVVVVTDDDPHGE 439

Query: 424 DPEKIRAEIIHGIP-----------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DP  +RAE++ G                      E   R  AIRTAI      D +++AG
Sbjct: 440 DPAAVRAEVLAGARAAAAAAAGTGTADARTVDVREVAPRDLAIRTAIAEAGAGDTVLIAG 499

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           +GHET+  V   + ++  D    R  L 
Sbjct: 500 RGHETIQEVAGVDVQL-DDRVEARAALN 526


>gi|268680557|ref|YP_003304988.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618588|gb|ACZ12953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 437

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 179/379 (47%), Gaps = 24/379 (6%)

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA--KALSYLSSQG 181
           +GK++ A+ +  +    G      G      +  +    +  +P  L   K L     +G
Sbjct: 73  NGKTTTAAAIYSLLLDLGQKVGLQGTRGCFINEKRVEDKSLTTPPILQTIKNLKMAVDEG 132

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +  +E SSH + Q+R+DG+       TN+ +DH+D+H+T   Y   K R FE+    E
Sbjct: 133 CEYFVMEVSSHAIVQNRIDGLFFALKILTNVTQDHLDFHKTIDEYIAVKSRFFED----E 188

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           S  +I +D+ + +     A        + G +    +     ++       I+ + K +D
Sbjct: 189 SLKLINSDERHIRFNRINA-------FTYGIEHPATYKVLAYSLKEGISAAIAKKEKVYD 241

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           F   L G F +YN L A      + +     + E +     V GR + V   S+   + V
Sbjct: 242 FESSLHGFFNLYNLLAAISAVDLLHVAGMEEICEAVSHFGGVEGRMQVV---SQDPLVIV 298

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AHT + +E +L+   ++     IVVFG GGDRD+ KRP MG +A   A   IVT DNP
Sbjct: 299 DFAHTPDGMEKVLE---SMKDKNCIVVFGAGGDRDRTKRPKMGAVAERYAKWMIVTSDNP 355

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE+P+ I  EI+ GI        K +R +AI  A+ M  K DV+++ GKG ET   V  
Sbjct: 356 RSENPDAIIEEIVAGIQRTESLHVKVDRYQAIEEALGMQKKSDVVLILGKGDETYQEVA- 414

Query: 478 GEKKMSVDCDIIREILGLI 496
           G K    D +++ EIL  +
Sbjct: 415 GVKYPFDDRNVVLEILARL 433


>gi|114777867|ref|ZP_01452798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
 gi|114551858|gb|EAU54398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
          Length = 488

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 138/493 (27%), Positives = 218/493 (44%), Gaps = 29/493 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E + QL        +  I  +  DSR+++ G+  + +  ++     ++  A  QGA A
Sbjct: 2   LAEGLGQL--HAESSDDVLIMGICDDSRYVKPGYAMICLPRSRAHVADYVEAAGKQGATA 59

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSS 128
           I+            ++ S+ P+L + + ++   L   RL+            TGT GK+S
Sbjct: 60  IIA--------VGVSVTSDLPVLHLASMQQA-GLLLRRLFRTEEARTHFYGITGTDGKTS 110

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTHV 185
           VA  +++   R          T        D      TTPS + +   LS  +  GV  V
Sbjct: 111 VAWMLREALTRYQPKPVWSCGTLGWLRAPDDILDIGNTTPSMLTMHAMLSSANLGGVHSV 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E SSHG+ Q R+ GI      +TN+G DH+  H   + Y   K    +         +
Sbjct: 171 ACEISSHGIAQERIAGIDFHTAIWTNMGHDHLQDHGGYETYLKTKAGFVQATAAHGGNVV 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             AD A  +E               G     + L     +    ++  S EG+      P
Sbjct: 231 ANADHADIREHAPE----HACWYGHGLYRDDVDLAWEQELPGLLRLK-SAEGEVVIEDIP 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L        A VA  L +++ I  A + + L ++   PGR + V      G++Y+DYAHT
Sbjct: 286 LGDFHAENVACVALTLMVSMAIPLADLPKLLGRISAPPGRMQEVTAGY--GQVYIDYAHT 343

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +L+  L+  R +T  R++VVFGCGG+RD+ KRP MG IA++ AD+  +T DNPR E P
Sbjct: 344 PEALDRCLQAARKLTRARLMVVFGCGGERDREKRPQMGAIAVEQADLVWITSDNPRGEMP 403

Query: 426 EKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             I +EI  G+            +R +AI  AI  L + D+L++AGKGHE    V  G++
Sbjct: 404 AVIASEIEQGMSQPYAAEVRLQLDRDKAIGEAIATLAEGDLLIIAGKGHEAYMDVC-GQR 462

Query: 481 KMSVDCDIIREIL 493
               D  +  + L
Sbjct: 463 LPWSDEQVAEKYL 475


>gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 641

 Score =  263 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 141/546 (25%), Positives = 223/546 (40%), Gaps = 83/546 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIR 87
           ++N VS DSR ++ G +FVA+ G K DGH +  QA+AQGA A+V+ +    L +   T  
Sbjct: 40  QVNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVLENLPPELIEADQTDL 99

Query: 88  SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            +  +++V +T   L+     +YG      N+  +TGT GK++  + +  +  +    + 
Sbjct: 100 LSRGVIIVPSTAAVLTPLCREIYGTATITRNLHGITGTDGKTTTTAMITWLLNKVDYPAG 159

Query: 146 QIGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            IG                TTP    L + L+ L + G   V +E SS    QHR+D + 
Sbjct: 160 SIGTLGAKLPDGRNLPTAYTTPPAPELHRLLAQLQTNGARAVCMEVSSQAAVQHRVDALA 219

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTN   DH+DYH T + Y  AK  LF  L  K + A++ ADD  +  + +     
Sbjct: 220 WQTMTFTNFTVDHLDYHHTVENYALAKASLFRGL-SKAATAVLNADDPLAYYLAQLTQAQ 278

Query: 264 GCRVL----SVGYQGKFIHLKK-------------------------------------- 281
                    ++G +G F    K                                      
Sbjct: 279 KVFYYIQDDALGSRGDFSQYIKDRSKILGKAWEKFMLEVQEKIPPESSREILCKAAAAGR 338

Query: 282 ------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVL 333
                 V   ++  Q  IS   +      PL G F + NAL A    + I   ID     
Sbjct: 339 VVAARNVKPTNSGWQAEISRGEETCTLTIPLLGRFNLNNALAAIATAMVICPNIDLRTWA 398

Query: 334 EHLEKLHVVPGRFEFVGTNSR-------------------GGRIYVDYAHTSNSLEMILK 374
             +  +  VPGR E +    +                     R+ +D+AHT  ++E +L 
Sbjct: 399 AAMATMPAVPGRLEIIDGQGQACPTCRPSNGKLNLEDTTTPYRVVIDFAHTPGAMEALLT 458

Query: 375 NIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +R     + ++ V+    G+RD+GKRP++  +   LAD  ++T +    E+P +I AE+
Sbjct: 459 EVRRHCCANKKLWVLANSCGNRDRGKRPLIAAVCERLADRIVLTLEEVGQENPAEILAEL 518

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE-TVHIVTNGEKKMSVDCDI 488
             G            R EAIR  I  L   D  VV   G E T +I  N      V+ D 
Sbjct: 519 QAGFRQPENIPVVPLRQEAIRYVISRLEPGDYFVVPSLGDEHTYNI--NNVAYPYVERDF 576

Query: 489 IREILG 494
           +++ L 
Sbjct: 577 VKQCLA 582


>gi|78776533|ref|YP_392848.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
 gi|78497073|gb|ABB43613.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 433

 Score =  263 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 119/477 (24%), Positives = 206/477 (43%), Gaps = 57/477 (11%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  +     ++ +S+   A   FV      E    ++  A   GA +I+     +++D 
Sbjct: 3   IEIPDEAFRYITENSQECDADTAFVLTP-QNE---KYLQNAKDNGAHSII-----NIKDV 53

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                                   ++L+G     I+ +TGT+GK++ AS +       G 
Sbjct: 54  ------------------------AKLFGIEKIKIVGITGTNGKTTTASAIYSFLLDLGY 89

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYL--AKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                G      +       T  +P  L   K +    S+      +E SSH + Q R++
Sbjct: 90  RVAMQGTRGFFMNDRVIEEKTLTTPSLLNTYKHIYQAVSEKCDFFIMEVSSHAIVQKRVE 149

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+       TN+ +DH+D+H+T   Y   K   F++    +   +I  D+  S    K  
Sbjct: 150 GLNFELKILTNITQDHLDFHKTLGEYIAVKNSFFQD----DGRKLINKDETKSSFNFKN- 204

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   + G +    +     +++N     I    +   F   L G F +YN + A  
Sbjct: 205 ------TFTYGIENSATYRLIAYSLNNASSGIIQHFSEVVPFTSSLHGFFNLYNLMAAIA 258

Query: 321 LCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + G     V   ++    V GR E V  +     + VD+AHT + ++ +L  ++  
Sbjct: 259 ATHLLSGKKLEEVTAVVDNFAGVSGRMEQVSESPN---VIVDFAHTPDGIQQVLNALKE- 314

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
               ++VVFG GGDRD+ KRP+MG++A  LA    +T DNPR+EDP+ I  +I+ GI   
Sbjct: 315 --KELLVVFGAGGDRDRTKRPLMGRVAASLAKKLYITSDNPRTEDPQDIVNDILEGIQDK 372

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                + NR +AI  A+    + +V+V+ GKG ET  I+ + +K    D +++REIL
Sbjct: 373 SIVQVELNRRKAIENALSEQKENEVVVILGKGDETYQIIYD-QKFPFDDREVVREIL 428


>gi|154496371|ref|ZP_02035067.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
 gi|150274454|gb|EDN01531.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
          Length = 507

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 121/482 (25%), Positives = 203/482 (42%), Gaps = 31/482 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R++  VS DS+ +  G +F+   G       ++  A  +GA   V    +          
Sbjct: 36  REVRLVSCDSQTVVPGTLFIC-KGAAFK-PQYLLDAAEKGAFVYVSERRWP--------E 85

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI------LAVTGTSGKSSVASFVQQICQRSG 141
              P ++V + R+ ++L A R +      +           T+    + S + +  +  G
Sbjct: 86  CALPCILVSDIRRSMALLADRAWNHPSGRLHITGITGTKGKTTTAYFLKSMLDEWRRSQG 145

Query: 142 LSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                I     +      +  +LTTP P+ L + L   +  G  ++++E SS  L  HR 
Sbjct: 146 KRESAILSTMITDDGVERRPAKLTTPEPLDLQRHLWNAAECGAEYLTMEVSSQALKYHRT 205

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            G++   G F N+G DHI    H   + YF +K+ +F +     + A +  D  +++ ++
Sbjct: 206 GGVEFSVGVFLNIGEDHISPVEHPDFEDYFASKLMIFRQ----SAAACVNLDSDFAERIL 261

Query: 258 KRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             A +       S  +    I+  ++    +  +  +       +    LPG F V NAL
Sbjct: 262 TAAESCSKIYTFSTKFSTADIYASEIRRDGDATRFLVRTPRYTRELSMGLPGSFNVENAL 321

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN- 375
            A     A+G+  + V   L +   VPGR E   T      + VDYAH   SLE +L + 
Sbjct: 322 AAVAAAEALGVPESAVAAGLAE-ATVPGRMETFNTPDGKLTVIVDYAHNGMSLEALLSSV 380

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R     ++ V+FGC G +   +R  MG+ A   AD  I+T+D+P  E+   I A+I   
Sbjct: 381 RREFPGRQLTVLFGCTGGKGLDRREGMGQAAGRWADRIILTEDDPGPEEVPDICADIGGY 440

Query: 436 IPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           I  F        +R EA+  AI   +   V+V+AGKG E      NG +    D  + R 
Sbjct: 441 IAPFGKTWTVIPDREEAVERAILEAHTPAVVVLAGKGAEQQQKRKNGPEPCVPDSLLARR 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|10566744|dbj|BAB15946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           glutamicum]
          Length = 555

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 142/503 (28%), Positives = 213/503 (42%), Gaps = 26/503 (5%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIA 65
            Y+  P+ + Q  +      E+ I  +  DS  +  +  IF A+ G +  G  F     A
Sbjct: 48  TYRWHPQGLCQ-GVPAHAVGEQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNA 106

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123
             A AI+  +A       A      PI+VVD+ R  L   +S +YG   ++  ++ VTGT
Sbjct: 107 AKAVAILTDAAGLEVLNEAG--ETRPIIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGT 164

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           SGK++ +  +++    +G     IG T T I       +LTTP    L    + +   GV
Sbjct: 165 SGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGV 224

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KE 241
           THV +E SSH L   R+ G      +FTNL +DH+D+H T   YF+AK   F    P   
Sbjct: 225 THVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVA 284

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDF 300
              ++  DD++ + +   A +    V ++G +  F       +    Q   I+    + +
Sbjct: 285 DKQVVCVDDSWGQRMASVAADVQT-VSTLGQEADFSATDINVSDSGAQSFKINAPSNQSY 343

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                LPG F V      A    A  +  A     + K+  VPGR E +    +     V
Sbjct: 344 QVELALPGAFNVA-NATLAFAAAAPWVLMATFARGMSKV-AVPGRMERID-EGQDFLAVV 400

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH   ++  +L  +RT   GR+   + C   RD  KR  MG      +  +  TD N 
Sbjct: 401 DYAHKPAAVAAVLDTLRTQIDGRLGSGYRCWWRRDSTKRGPMGS-CPHRSGSSYCTDANL 459

Query: 421 RSEDPEKIRAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
                  IRA +  G              +E G+R EAIR  +E     D +VVAGKGHE
Sbjct: 460 V-RVAGTIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKGHE 518

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              +V  G      D +  R  L
Sbjct: 519 VGQLVA-GVTHHFDDREEGRAAL 540


>gi|218753881|ref|ZP_03532677.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis GM 1503]
          Length = 394

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 167/364 (45%), Gaps = 12/364 (3%)

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V+   + +G  +  IG     +      + LTTP    L   L+ +  +GV  V +E 
Sbjct: 21  YLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEV 80

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   
Sbjct: 81  SSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCI 140

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPG 308
           D  +   M         V +      +            QQ T I   G        LPG
Sbjct: 141 DDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPG 200

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + V N LVA  +   +G+     +  L ++  VPGR E +    +G    VDYAH   +
Sbjct: 201 RYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEA 258

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  I
Sbjct: 259 LRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAI 317

Query: 429 RAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           R EI+ G          +E  +R +AIR A+      DV+++AGKGHET      G  + 
Sbjct: 318 RREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRP 376

Query: 483 SVDC 486
             D 
Sbjct: 377 FDDR 380


>gi|309810142|ref|ZP_07703988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312870943|ref|ZP_07731048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872249|ref|ZP_07732322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|325911604|ref|ZP_08174012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325912949|ref|ZP_08175323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
 gi|308169641|gb|EFO71688.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311092333|gb|EFQ50704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093633|gb|EFQ51972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|325476590|gb|EGC79748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325477763|gb|EGC80901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
          Length = 519

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 109/495 (22%), Positives = 197/495 (39%), Gaps = 49/495 (9%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFR---PTYLSYAKENGAICYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V N  K +SL ++  Y    +++  +A TGT GK++ A F++ I  +   G ++   
Sbjct: 87  ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 146

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H   + Y + K+    +L+      II A   +  E+   A  
Sbjct: 207 DLGFFLNITPDHIGVNEHPNFEDYLHCKL----QLMVNSRKCIINAMTDHFDEIYAAATT 262

Query: 263 AGCRVLSVGYQGKFI-----------HLKKVCAIHNKQQVTISVEGK-------DFDFLF 304
                    +                    V     + +  +  E         + ++  
Sbjct: 263 TTNPDSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSL 322

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   NA  A       G++     + ++ +  +PGR E + T + G  + VDYAH
Sbjct: 323 KMIGDFNEINATAAIIGAGLAGVNYQDCYDGIKNVT-IPGRMETLTTANHG-TVIVDYAH 380

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + +   S +IIVV G  GD+   +R    +     A+   +T D+P  E
Sbjct: 381 NKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFE 440

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           D + I  EI  GI       + + +R +AI  AI+     DV+++ GKG +    +   +
Sbjct: 441 DAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDDDVVLICGKGADPYQKIRGVD 500

Query: 480 KKMSVDCDIIREILG 494
                D  + +E++ 
Sbjct: 501 TPYPTDIKVAQEVIN 515


>gi|300812318|ref|ZP_07092754.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496738|gb|EFK31824.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 516

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 201/495 (40%), Gaps = 49/495 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             VS DSR +Q   +F    G        ++  A   GA A V    Y          + 
Sbjct: 32  EAVSYDSRDVQNNSLFFC-KGAGF--RPTYLTMAKENGAIAYVAEQPYPE-------GTG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS-GLSSFQ 146
              L+V N  K ++L ++  Y    +++  +  TGT GK++ A F++ +  +  G  +  
Sbjct: 82  MHALIVRNVSKAMALLSAAFYRFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTAL 141

Query: 147 IGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +     I   A ++       TP  + L + +      G+TH+ +E SS    ++R+ G+
Sbjct: 142 LSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGL 201

Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G F N+  DHI    H   + Y + K+    +LL      II A+     +V   A
Sbjct: 202 TYDLGFFLNITPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAETDRFADVYAAA 257

Query: 261 HNAGCRVLSV-----GYQGKF------IHLKKVCAIHNKQQVTISVEGK-------DFDF 302
                          G++            K V     + + T++             ++
Sbjct: 258 TTTTNPDSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEY 317

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+F   NA  A       G+      + +  +  +PGR E V T   G  I VDY
Sbjct: 318 TLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHVT-IPGRMETVTTQKHG-LIVVDY 375

Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH   S+  +++ +R   T+ R+IVV G  GD+   +RP   +     AD A +T D+P 
Sbjct: 376 AHNKASMLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSESLTAEADKAYLTTDDPG 435

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            E+ + I  EI  GI       + + +R +AI+ AI      DV+++ GKG +    +  
Sbjct: 436 FENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGADAFQKIRG 495

Query: 478 GEKKMSVDCDIIREI 492
            +   + D  I R++
Sbjct: 496 VDTPYAGDIVIARQV 510


>gi|313124624|ref|YP_004034883.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312281187|gb|ADQ61906.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 516

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 201/495 (40%), Gaps = 49/495 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             VS DSR +Q   +F    G        ++  A   GA A V    Y          + 
Sbjct: 32  EAVSYDSRDVQNNSLFFC-KGAGF--RPTYLTMAKENGAIAYVAEQPYPE-------GTG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS-GLSSFQ 146
              L+V N  K ++L ++  Y    +++  +  TGT GK++ A F++ +  +  G  +  
Sbjct: 82  MHALIVRNVSKAMALLSAAFYRFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTAL 141

Query: 147 IGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +     I   A ++       TP  + L + +      G+TH+ +E SS    ++R+ G+
Sbjct: 142 LSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGL 201

Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G F N+  DHI    H   + Y + K+    +LL      II A+     +V   A
Sbjct: 202 TYDLGFFLNISPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAETDRFADVYAAA 257

Query: 261 HNAGCRVLSV-----GYQGKF------IHLKKVCAIHNKQQVTISVEGK-------DFDF 302
                          G++            K V     + + T++             ++
Sbjct: 258 TTTTNPDSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEY 317

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+F   NA  A       G+      + +  +  +PGR E V T   G  I VDY
Sbjct: 318 TLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHVT-IPGRMETVTTQKHG-LIVVDY 375

Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH   S+  +++ +R   T+ R+IVV G  GD+   +RP   +     AD A +T D+P 
Sbjct: 376 AHNKASMLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSESLTAEADKAYLTTDDPG 435

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            E+ + I  EI  GI       + + +R +AI+ AI      DV+++ GKG +    +  
Sbjct: 436 FENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGADAFQKIRG 495

Query: 478 GEKKMSVDCDIIREI 492
            +   + D  I R++
Sbjct: 496 VDTPYAGDIVIARQV 510


>gi|307720218|ref|YP_003891358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978311|gb|ADN08346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 431

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 119/395 (30%), Positives = 192/395 (48%), Gaps = 24/395 (6%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTT 164
           + L+G +   I+ +TGT+GK++ AS +       G  +   G      +    +   LTT
Sbjct: 54  AELFGVNKIKIIGITGTNGKTTTASAIYSFLLDLGYKAALQGTRGLFMNDEVCEGKTLTT 113

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           PS +   K +      G  +  +E SSH L Q R++G+K      TN+ +DH+DYH+T +
Sbjct: 114 PSVLNTYKHIYQAVCAGCEYFIMEVSSHALVQRRIEGLKFELKILTNITQDHLDYHKTIE 173

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y   K   F++    ES  +I  D+  +    K A        + G +    +     +
Sbjct: 174 EYIAVKNGFFQD----ESKKLINKDEPKAAFNFKNA-------YTYGIENPATYRLMAYS 222

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVP 343
           ++      I    +   F   L G F +YN + A      I       + + ++    V 
Sbjct: 223 LNEGSSGIIQHFQEIVPFTASLHGFFNLYNLMAAIAATHLITDKTLEEIADVVDNFAGVS 282

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E V        + VD+AHT + ++ +L  ++      +IVVFG GGDRD+ KRPIMG
Sbjct: 283 GRMEQVCAAPN---VIVDFAHTPDGMQQVLNALKE---KELIVVFGAGGDRDRLKRPIMG 336

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQD 460
           ++A  LA   IVT DNPR EDPE I  +I+ GI      I + NR +AI+ A++M   ++
Sbjct: 337 RVAASLAKKVIVTSDNPRHEDPEIIIDDILEGIQDKTNIIVELNRKKAIQMALDMQEDEE 396

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           V+V+ GKG E   ++ + EK    D ++++E+L L
Sbjct: 397 VVVILGKGDEAYQVIYD-EKFAFDDREVVKELLNL 430


>gi|332637430|ref|ZP_08416293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Weissella
           cibaria KACC 11862]
          Length = 508

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 122/516 (23%), Positives = 226/516 (43%), Gaps = 45/516 (8%)

Query: 6   LIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L  +   E++ +Q  +      + ++  ++ +S  +    +   I G +     ++  AI
Sbjct: 3   LTAQQITEILADQDLLISTPEFKGELKHLAYNSNDVAPETLLF-IKG-RFK-AEYLTDAI 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
           A+G +AIV  +++       T  ++ P  VVD+    +S+ +   Y      +  + +TG
Sbjct: 60  AKGVKAIVAPTSF-------THDTDLPTWVVDDVPAAMSVLSMAFYDYPQNKLALIGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-----FAQDNRLTTPSPIYLAKALSYL 177
           T GK+S      ++ + +      +  T  + +     F     LTTP  + L + ++  
Sbjct: 113 TKGKTSATYMAYEMLRVATDDKVALSSTLQVITGADPKFHYRAHLTTPESLDLFRWMAEA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFE 235
            + G+TH+ +E SS      R+ G++   G F N+  DH+    H T + Y   KM LF+
Sbjct: 173 VANGMTHMVMEVSSQAYKMERVYGLRFNVGVFLNISPDHVGENEHPTFEDYLEHKMMLFD 232

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQG-----KFIHLKKVCAIHNK 288
                    I+ AD  +  E+++ A  A  R  +   G +        ++   V A    
Sbjct: 233 H----SEQIILNADSDHFSELIEHAELAVPRDGIWLYGREDEDSPKADVYYDTVEADLQG 288

Query: 289 QQVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               +   G+         D+   +PG+F   NA+ A      +G D+  + E LE +  
Sbjct: 289 STFAVREAGQQAARLGIAGDYHLDMPGDFNQGNAVAAMIATRLVGADTDAMHEGLE-VVK 347

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRP 400
           +PGR + + T + G  IYVDYAH   S+  +L  +RT  +  ++ +V G  G++   +RP
Sbjct: 348 IPGRMQVLTTQNHG-TIYVDYAHNYASIAALLNFVRTNETVEKLTIVVGAPGNKGVSRRP 406

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456
            +G+   + AD+  +T D+P+ EDP  I  EI   I         + +R  AI  AI+  
Sbjct: 407 GIGQAVSEGADVVYLTSDDPQFEDPNAIADEIQAAITNDHVVINREMDRTIAITEAIKAA 466

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              DV+V+A KG +    +   +     D  + + +
Sbjct: 467 GPNDVVVLAAKGLDEYQKIGGVDTPYENDWAVAQRV 502


>gi|289754268|ref|ZP_06513646.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289694855|gb|EFD62284.1| predicted protein [Mycobacterium tuberculosis EAS054]
          Length = 373

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 120/363 (33%), Positives = 167/363 (46%), Gaps = 12/363 (3%)

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            V+   + +G  +  IG     +      + LTTP    L   L+ +  +GV  V +E S
Sbjct: 1   MVEGGLRAAGRVAGLIGTIGNRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVS 60

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D
Sbjct: 61  SHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCID 120

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGE 309
             +   M         V +      +            QQ T I   G        LPG 
Sbjct: 121 DDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGR 180

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + V N LVA  +   +G+     +  L ++  VPGR E +    +G    VDYAH   +L
Sbjct: 181 YNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEAL 238

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR
Sbjct: 239 RSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIR 297

Query: 430 AEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            EI+ G          +E  +R +AIR A+      DV+++AGKGHET      G  +  
Sbjct: 298 REILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPF 356

Query: 484 VDC 486
            D 
Sbjct: 357 DDR 359


>gi|309803501|ref|ZP_07697594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164385|gb|EFO66639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 519

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/495 (22%), Positives = 196/495 (39%), Gaps = 49/495 (9%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFR---PTYLSYAKENGAICYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V N  K +SL ++  Y    +++  +A TGT GK++ A F++ I  +   G ++   
Sbjct: 87  ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 146

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H   + Y + K+    +L+      II A   +  E+   A  
Sbjct: 207 DLGFFLNITPDHIGVNEHPNFEDYLHCKL----QLMVNSRKCIINAMTDHFDEIYAAATT 262

Query: 263 AGCRVLSVGYQGKFI-----------HLKKVCAIHNKQQVTISVEGK-------DFDFLF 304
                    +                    V     + +  +  E         + ++  
Sbjct: 263 TTNPDSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSL 322

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   NA  A       G++     + ++ +  +PGR E + T   G  + VDYAH
Sbjct: 323 KMIGDFNEINATAAIIGAGLAGVNYQDCYDGIKNVT-IPGRMETLTTAHHG-TVIVDYAH 380

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + +   S +IIVV G  GD+   +R    +     A+   +T D+P  E
Sbjct: 381 NKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFE 440

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           D + I  EI  GI       + + +R +AI  AI+     DV+++ GKG +    +   +
Sbjct: 441 DAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDDDVVLICGKGADPYQKIRGVD 500

Query: 480 KKMSVDCDIIREILG 494
                D  + +E++ 
Sbjct: 501 TPYPTDIKVAQEVIN 515


>gi|104774695|ref|YP_619675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116514822|ref|YP_813728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122274446|sp|Q047T2|MURE_LACDB RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|123378345|sp|Q1G8B5|MURE_LACDA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|103423776|emb|CAI98782.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116094137|gb|ABJ59290.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126516|gb|ADY85846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 516

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 117/496 (23%), Positives = 201/496 (40%), Gaps = 49/496 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             VS DSR +Q   +F    G        ++  A   GA A V    Y          + 
Sbjct: 32  EAVSYDSRDVQNNSLFFC-KGAGF--RPTYLTMAKENGAIAYVAEQPYPE-------GTG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS-GLSSFQ 146
              L+V N  K ++L ++  Y    +++  +  TGT GK++ A F++ +  +  G  +  
Sbjct: 82  MHALIVRNVSKAMALLSAAFYSFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTAL 141

Query: 147 IGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +     I   A ++       TP  + L + +      G+TH+ +E SS    + R+ G+
Sbjct: 142 LSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKSRVFGL 201

Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G F N+  DHI    H   + Y + K+    +LL      II A+     +V   A
Sbjct: 202 TYDLGFFLNISPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAETDRFADVYAAA 257

Query: 261 HNAGCRVLSV-----GYQGKF------IHLKKVCAIHNKQQVTISVEGK-------DFDF 302
                          G++            K V     + + T++             ++
Sbjct: 258 TTTTNPDSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEY 317

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+F   NA  A       G+      + +  +  +PGR E V T   G  I VDY
Sbjct: 318 TLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHVT-IPGRMETVTTQKHG-LIVVDY 375

Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH   S+  +++ +R   T+ R+IVV G  GD+   +RP   +     AD A +T D+P 
Sbjct: 376 AHNKASMLALMRFMRREFTTPRVIVVVGAPGDKGISRRPGFSESLTAEADKAYLTTDDPG 435

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            E+ + I  EI  GI       + + +R +AI+ AI      DV+++ GKG +    +  
Sbjct: 436 FENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPDDVVLLCGKGADAFQKIRG 495

Query: 478 GEKKMSVDCDIIREIL 493
            +   + D  I R+++
Sbjct: 496 VDTPYAGDIVIARQVI 511


>gi|289762319|ref|ZP_06521697.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
 gi|289709825|gb|EFD73841.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
          Length = 390

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 166/364 (45%), Gaps = 12/364 (3%)

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V+   + +G  +  IG     +      + LTTP    L   L+ +  +GV  V +E 
Sbjct: 17  YLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEV 76

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   
Sbjct: 77  SSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCI 136

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPG 308
           D  +   M         V +      +            QQ T I   G        LPG
Sbjct: 137 DDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPG 196

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + V N LVA  +   +G+     +  L ++  VPGR E +    +G    VDYAH   +
Sbjct: 197 RYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEA 254

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +L         R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  I
Sbjct: 255 LRSVL-TTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAI 313

Query: 429 RAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           R EI+ G          +E  +R +AIR A+      DV+++AGKGHET      G  + 
Sbjct: 314 RREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRP 372

Query: 483 SVDC 486
             D 
Sbjct: 373 FDDR 376


>gi|295426127|ref|ZP_06818794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064163|gb|EFG55104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 551

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 113/502 (22%), Positives = 196/502 (39%), Gaps = 49/502 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            KI  VS DSR IQ   +F    G        ++  A   GA   V    Y         
Sbjct: 57  TKIEYVSYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKDNGAICYVAEQPYPE------- 106

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS-GLS 143
                 L+V +  K ++L ++  +    +++  +A TGT GK++ A F++ +  +  G  
Sbjct: 107 GKGMHALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQMNGGR 166

Query: 144 SFQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  I   + I     ++       TP  + L + +      G+TH+ +E SS    ++R+
Sbjct: 167 TALISSVNDIVGRRPEDSFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRV 226

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            G+    G F N+  DHI    H     Y + K+    +L+      II A+  +  E+ 
Sbjct: 227 FGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAESDHFDEIY 282

Query: 258 KRAHNAGCRVLSVGYQGK-----------FIHLKKVCAIHNKQQVT-ISVEGK------D 299
             A           +  +                       + +     V  K      +
Sbjct: 283 AAATTTTNPDSIYLFASENFENPKLNVPIDFRYASQETDMRETRFKLFCVSDKAKQLPIN 342

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            ++   + G+F   NA  A       G+      + +  +  +PGR +   T   G  + 
Sbjct: 343 GEYTLQMIGDFNESNATAAIIGAGLAGMSHDACAKGIRHVT-IPGRMQTEMTKDHG-MVI 400

Query: 360 VDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   S+  ++    R   + +IIVV G  GD+   +RP   +     AD A +T D
Sbjct: 401 VDYAHNKASMMALMSFVKREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTD 460

Query: 419 NPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +P  EDP+ I  EI  GI         + +R +AI  AI M  K DV+++ GKG +    
Sbjct: 461 DPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGKDDVVLICGKGADAFQK 520

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           +   +     D  + + ++  +
Sbjct: 521 IRGVDTPYPSDIVVAQNVINEL 542


>gi|221194981|ref|ZP_03568037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
 gi|221184884|gb|EEE17275.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
          Length = 519

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 113/486 (23%), Positives = 195/486 (40%), Gaps = 34/486 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR I+ G +FV   G       F+  A+  GA A + + +++ +     I    P
Sbjct: 34  GIDHDSRIIEPGHVFVC-KGAAFK-PEFLKSALEAGAVAYLCAESHAAE--LEAIAPTVP 89

Query: 92  ILVV--DNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQ--RSGLSSF 145
            L+   +N R+ ++  ++ + G   H   ++ +TGT GKS+ A  ++ I         + 
Sbjct: 90  ALIATDENLRRAMAESSAYVTGHPDHGLTMIGITGTKGKSTTACMLRAILDGDEPYEKTA 149

Query: 146 QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G               T P    L + L+     G+T++++E SS  L   R  G+ L
Sbjct: 150 IMGSIEVFDGIEHGKPDNTTPEAPELWRHLANAQKCGLTYMAMEVSSQALKYDRTYGLHL 209

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----- 257
               F N+GRDHI    H T + YF +KM++F+        A+I  +  + ++VM     
Sbjct: 210 DIAVFLNIGRDHISPVEHSTFEDYFVSKMKIFD----MAKTAVINRNTEHYEDVMAHVRA 265

Query: 258 --KRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +R       V +         I    + + +                  P+PG F V 
Sbjct: 266 VHERNPECCQHVYTFSATNPKADIWADDISSEYGLVSFRAHTPTWTGHLSIPMPGLFNVD 325

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  +   +G     +   L   H V GR E + T  R     VDYAH   + + + 
Sbjct: 326 NALAAITVANLLGFSGEKLQYPLLNTH-VSGRMELIPTKDRKVTALVDYAHNRLAYQKLF 384

Query: 374 -KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
             + +   +    VV G  G + Q +R  + +     AD  I T ++P  +DP +I AE+
Sbjct: 385 SSSSQEFPNYGRYVVLGAVGGKAQERRRDLPEEGSKWADHLIYTTEDPAFDDPAEICAEM 444

Query: 433 IHGIP---GFIEKGNRIEAIRTAIEML---NKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
               P    +    +R EAIR A+ +     +  ++ +  KG E    +         D 
Sbjct: 445 AAATPEDASYEIILDREEAIRQAVRLAYTDARPSIVYLLAKGDEDFQSICGKRVPWKTDA 504

Query: 487 DIIREI 492
            + +  
Sbjct: 505 AVFKAA 510


>gi|302190928|ref|ZP_07267182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus iners AB-1]
 gi|309805417|ref|ZP_07699464.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808241|ref|ZP_07702150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|312873648|ref|ZP_07733695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|312875730|ref|ZP_07735725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|329921022|ref|ZP_08277550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
 gi|308165235|gb|EFO67471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168529|gb|EFO70638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|311088722|gb|EFQ47171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311090901|gb|EFQ49298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|328935298|gb|EGG31778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
          Length = 519

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 109/495 (22%), Positives = 197/495 (39%), Gaps = 49/495 (9%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFR---PTYLSYAKENGAICYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V N  K +SL ++  Y    +++  +A TGT GK++ A F++ I  +   G ++   
Sbjct: 87  ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 146

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H   + Y + K+    +L+      II A   +  E+   A  
Sbjct: 207 DLGFFLNITPDHIGVNEHPNFEDYLHCKL----QLMVNSRKCIINAMTDHFDEIYAAATT 262

Query: 263 AGCRVLSVGYQGKFI-----------HLKKVCAIHNKQQVTISVEGK-------DFDFLF 304
                    +                    V     + +  +  E         + ++  
Sbjct: 263 TTNPDSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSL 322

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   NA  A       G++     + ++ +  +PGR E + T + G  + VDYAH
Sbjct: 323 KMIGDFNEINATAAIIGAGLAGVNYQDCYDGIKNVT-IPGRMETLTTANHG-TVIVDYAH 380

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + +   S +IIVV G  GD+   +R    +     A+   +T D+P  E
Sbjct: 381 NKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFE 440

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           D + I  EI  GI       + + +R +AI  AI+     DV+++ GKG +    +   +
Sbjct: 441 DAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICGKGADPYQKIRGVD 500

Query: 480 KKMSVDCDIIREILG 494
                D  + +E++ 
Sbjct: 501 TPYPTDIKVAQEVIN 515


>gi|116490935|ref|YP_810479.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
 gi|116091660|gb|ABJ56814.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
          Length = 499

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 131/514 (25%), Positives = 230/514 (44%), Gaps = 36/514 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHI-QAGWIFVAIVGNKEDGH 57
           M+ +D   +   E +N+  I   +  E +   +++  DSR + +   +FV + G  +   
Sbjct: 1   MR-EDFTNEIVTESLNEAGILVEKPSEIRRHFDDLQFDSRKVTKKNTLFV-VKGAFK--I 56

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  ++      IV S    +         N P  +V N++  L++ ++  +G   + +
Sbjct: 57  EYLTASLLDKISGIVTSRKEKIN------IPNLPHWIVSNSQIALAVLSAEFFGHPEKKL 110

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-----AQDNRLTTPSPIYL 170
             L +TGT GK+S       +  R   ++ Q    STI +F        + LTTP    L
Sbjct: 111 KILGITGTKGKTSSTYMAYSLLDRL--TNHQTAMFSTIDTFLGRGIKFKSELTTPESYEL 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228
              +      G  ++ +E SS    ++R+ GI    G+F N+  DHI    H T   Y  
Sbjct: 169 FSNMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFADYLA 228

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHN 287
            K  L E         +   DDA+ +E +  A + G + +SV    K      +  A  +
Sbjct: 229 HKKMLAEN----SDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKKADLD 284

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +    ++ +G   +FL  +PG F +YNA VA  +   +G       + L +L  +PGR  
Sbjct: 285 ESIFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQ-IPGRMV 343

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            + T S G  I VDYAH   ++  +L  +++    G+II+V G  GD+ + +R   G++ 
Sbjct: 344 KIKTKSHG-LIIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRSQFGEVI 402

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVL 462
               D+A +T D+P +EDP +I  +I   I        E+ +R +AI+ AI+  N  D++
Sbjct: 403 SKFVDVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKANINDLV 462

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           V+A KG +      + +     D  +  E L  I
Sbjct: 463 VLAAKGEDAFQKTNHVDVPYLGDKKVAEEFLAEI 496


>gi|297170221|gb|ADI21259.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 464

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 224/471 (47%), Gaps = 29/471 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V ++S++++   +F+++ G    G  ++    A  A+ I++ S+ ++         + 
Sbjct: 12  ENVVTNSKYLKKNDVFLSLKG----GAKYLTSDQANLAKHILLDSSETI---------DL 58

Query: 91  P-ILVVDNTR-KFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           P ++ + +    +L          H   + L +TGT+GK+S  SF+ QI + + +     
Sbjct: 59  PKVIKIKDLNSTYLEWIDEYFDIDHSYFDNLFITGTNGKTSTLSFLSQIFKSNDIKHASS 118

Query: 148 GPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           G   T  +     +N LTT  P+++   +S      + ++  EASS G+D++RL G+K+ 
Sbjct: 119 GTLGTFINDKKIFNNELTTEEPVFIRNLMSKCFRLSIKNIIFEASSIGVDKNRLRGLKID 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTN+ RDH+DYH + + Y +AK +L      K     +  DD      +++ ++   
Sbjct: 179 HAIFTNISRDHLDYHGSLKKYIDAKFKLISN--SKAKTVAVNFDDEIISRHLRKMYSKET 236

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +S       I  + +    +   +         F     +  +F +YN  ++      
Sbjct: 237 FTISSKNIESDIFFRVLKFYEDGNIEFLAETPWGKFQAASKIESKFNLYNLFLSLPYFQY 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +  D       +E L +  GR       +    IY+DYAH+  +LE + K +      ++
Sbjct: 297 VNNDCEDFFAQVENLSLPYGRLNKTEKEN----IYIDYAHSPKALESVCKYLYKKKKNKL 352

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441
           I+VFG GG+RD+GKR  MG+IA    +   VT DNPR+EDP +I   II GI G      
Sbjct: 353 IIVFGAGGERDEGKRYQMGEIADKYCEKIYVTSDNPRNEDPRQIADMIIDGIKGTDKICI 412

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + +R  AI+ AI  L ++D+L++AGKGHE   IV + E     D + +++ 
Sbjct: 413 ELDRSCAIKNAINELGEEDILLIAGKGHEKKQIVGD-EYLDFSDFEEVKKC 462


>gi|315653102|ref|ZP_07906027.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
 gi|315489467|gb|EFU79104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
          Length = 519

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 109/495 (22%), Positives = 197/495 (39%), Gaps = 49/495 (9%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFR---PTYLSYAKENGAICYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V N  K +SL ++  Y    +++  +A TGT GK++ A F++ I  +   G ++   
Sbjct: 87  ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 146

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H   + Y + K+    +L+      II A   +  E+   A  
Sbjct: 207 DLGFFLNITPDHIGVNEHPNFEDYLHCKL----QLMVNSRKCIINAMTDHFDEIYAAATT 262

Query: 263 AGCRVLSVGYQGKFI-----------HLKKVCAIHNKQQVTISVEGK-------DFDFLF 304
                    +                    V     + +  +  E         + ++  
Sbjct: 263 TTNPDSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSL 322

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   NA  A       G++     + ++ +  +PGR E + T + G  + VDYAH
Sbjct: 323 KMIGDFNEINATAAIIGAGLAGVNYQDCYDGIKNVT-IPGRMETLTTANHG-TVIVDYAH 380

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + +   S +IIVV G  GD+   +R    +     A+   +T D+P  E
Sbjct: 381 NKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFE 440

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           D + I  EI  GI       + + +R +AI  AI+     DV+++ GKG +    +   +
Sbjct: 441 DAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICGKGADPYQKIRGVD 500

Query: 480 KKMSVDCDIIREILG 494
                D  + +E++ 
Sbjct: 501 TPYPTDIKVAQEVIN 515


>gi|163815921|ref|ZP_02207291.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
 gi|158448731|gb|EDP25726.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
          Length = 507

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 112/525 (21%), Positives = 205/525 (39%), Gaps = 56/525 (10%)

Query: 1   MKLQDLIYKDFPELINQ---LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK ++L      ++++Q   ++ +    ++     ++ +S+ +  G  FV   G      
Sbjct: 1   MK-ENLQLTTLLDILDQQKLVTDYSEDCKDISPTHITINSKDVVPGTFFVC-KGASFK-E 57

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  AI+QGA   +    Y           + P ++V + RK ++L A   +G   +N+
Sbjct: 58  EYLKSAISQGAIVYLSQQKYDG--------VDIPYIIVSDIRKAMALAARWFFGNPGDNL 109

Query: 118 LAVTG----------TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             V               K  +  +    C         +G          +  LTTP P
Sbjct: 110 TKVGITGTKGKTTVTFVMKDILDKYTDNRCAAFSTHEIDVGT------KVFETTLTTPEP 163

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           I L        ++G TH  +E SS  +  +R+ G     G FTN+  DHI    H + + 
Sbjct: 164 IELQTYFDMAVNEGCTHCIMEVSSQAMKMNRIYGEHYKVGVFTNIDYDHISPTEHASMED 223

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------------V 270
           Y   K+      L +    ++Y+D  Y + +     +    V                  
Sbjct: 224 YLGCKVSF----LKQCDNVVLYSDTRYFETIYNEVRDKHVVVYGSKESVEKLMSRDDDFF 279

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +F  +       +     +   G++  +   L G++ V N + A    + IGI + 
Sbjct: 280 EKDTEFASIHNEDLTDHNSYFELIYGGENRAYNTNLIGDYNVENIVAAIISSLLIGIPNE 339

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFG 389
            +   +  ++ VPGR +      R     +DYAH   S+  +     +T+    I VVFG
Sbjct: 340 QIRSSIRDIY-VPGRLQVYHWKDR--TFMIDYAHNYISMYRLYEMVKKTMKPKSITVVFG 396

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEA 448
           CGG+R + +R  MG++A   AD  ++T ++P  E  E I  EI   I        +R EA
Sbjct: 397 CGGERYKKRREDMGRLAEQYADKVVLTMEDPGFESCEDICKEIKQYITKPCYIIVDREEA 456

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +  A++     ++++  GKG E+   +     +   D  +I   L
Sbjct: 457 LTRALDEAQPGELVITTGKGIESTQRINGTFVQCHSDAQVIEHWL 501


>gi|325684938|gb|EGD27082.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 516

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 200/495 (40%), Gaps = 49/495 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             VS DSR +Q   +F    G        ++  A   GA A V    Y          + 
Sbjct: 32  EAVSYDSRDVQNNSLFFC-KGAGF--RPTYLTMAKENGAIAYVAEQPYPE-------GTG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS-GLSSFQ 146
              L+V N  K ++L ++  Y    +++  +  TGT GK++ A F++ +  +  G  +  
Sbjct: 82  MHALIVRNVSKAMALLSAAFYRFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTAL 141

Query: 147 IGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +     I   A ++       TP  + L + +      G+TH+ +E SS    ++R+ G+
Sbjct: 142 LSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGL 201

Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               G F N+  DHI    H   + Y + K+    +LL      II A+     +V   A
Sbjct: 202 TYDLGFFLNISPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAETDRFADVYAAA 257

Query: 261 HNAGCRVLSV-----GYQGKF------IHLKKVCAIHNKQQVTISVEGK-------DFDF 302
                          G++            K V     + + T++             ++
Sbjct: 258 TTTTNPDSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEY 317

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+F   NA  A       G+      + +  +  +PGR E V T   G  I VDY
Sbjct: 318 TLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHVT-IPGRMETVTTQKHG-LIVVDY 375

Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH   S+  +++ +R   T+ RIIVV G  GD+   +R    +     AD A +T D+P 
Sbjct: 376 AHNKASMLALMRFMRREFTNPRIIVVVGAPGDKGISRRQGFSESLTAEADKAYLTTDDPG 435

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            E+ + I  EI  GI       + + +R +AI+ AI      DV+++ GKG +    +  
Sbjct: 436 FENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGADAFQKIRG 495

Query: 478 GEKKMSVDCDIIREI 492
            +   + D  I R++
Sbjct: 496 VDTPYAGDIVIARQV 510


>gi|118475066|ref|YP_891273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
 gi|118414292|gb|ABK82712.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 429

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 211/473 (44%), Gaps = 63/473 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ +S+  ++G  F  +  N      F   AI  GA  I             T +    I
Sbjct: 11  ITDNSKTCESGCFF--LKSNSN--AKFENDAIKSGAIII-------------TPKRAKTI 53

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L +D+                   ++ +TGT+GK++ A  +    +  G   +++G + T
Sbjct: 54  LNLDD----------------GIRLIGITGTNGKTTTAFAIAFGLRSLG---YKVGISGT 94

Query: 153 ISSFAQDNRLTTPS--PIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKLIAG 207
             +F  D ++         + + LSY+      G  +  +E SSH + Q+R++G+     
Sbjct: 95  RGAFICDKQIADKGLTTSQILETLSYIKQAKESGCRYFVMEVSSHAIAQNRIEGLNFALK 154

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL +DH+DYH++   Y   K   F++    +SP +I  DD   K   K       + 
Sbjct: 155 VFTNLSQDHLDYHKSFSEYARVKSSFFDD----DSPKLINGDDESIKFNHKNTMIYWLK- 209

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG- 326
                        +        +  I  + +  +    L G+F +YN L A G    +  
Sbjct: 210 -----NSDASFFVENYDFKGGIKANIKSKNETANLQSHLQGKFNLYNLLAAIGSIKFLSR 264

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +      + + K   V GR E V   S+   + VD+AHT + +E +L     ++   ++V
Sbjct: 265 VSLQEAADSVRKFESVAGRVEIV---SKNPLVIVDFAHTPDGIEKVLDA---LSHDELVV 318

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKG 443
           VFG GGDRD+ KRPIMGKI    A I+IVT DNPR+EDP  I  +I+ G+          
Sbjct: 319 VFGAGGDRDKTKRPIMGKIVQKYASISIVTSDNPRTEDPNSIIDDILAGMQINNSVFSIE 378

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           NR +AI+ AIE+      +VV GKG E    + +G+K    D  +++EIL  I
Sbjct: 379 NRKDAIKKAIELA-AGKTVVVLGKGDEPYQEI-SGKKYPFSDKLVVQEILSAI 429


>gi|269795579|ref|YP_003315034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097764|gb|ACZ22200.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 535

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 142/515 (27%), Positives = 234/515 (45%), Gaps = 36/515 (6%)

Query: 9   KDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +   +L + +++      R   ++ V   S  +Q G +FVA+ G +  G  F   A+A G
Sbjct: 16  RSLGDLADTVAVTVDPAARGVLVSGVVLGSADVQPGDLFVAVPGARSHGARFTAAAVAAG 75

Query: 68  AEAIVVSSA----YSLQDFSATIRSNTPILVVD---NTRKFLSLFASRLYGKHPENILAV 120
           A A++  +         D    +   TP++++    + ++     AS  Y      + + 
Sbjct: 76  AVAVLTDTEGLALLESTDEGLALVHGTPVVLLPQGSDPQRAAGSAASWFYDHPSAALTSF 135

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             T           +  +    G +   +G   T   +    +RLTTP    L   L+ +
Sbjct: 136 GVTGTNGKTTTTYLLDHLLTALGRTVGLVGTVETRSGARVLPSRLTTPDAATLQGVLATM 195

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  +++E SSH + Q R+DG+      FTNL +DH+D+H     YF AK  LF   
Sbjct: 196 REDGVDVLAMEVSSHSISQRRIDGLHFDVAGFTNLSQDHLDFHGDLDRYFAAKAELFTAE 255

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVT-I 293
             +    ++  DD + + +   A +     LSV + G       ++ V A  +    + +
Sbjct: 256 RARRGVVVV--DDEWGRRLAATA-DIPTVTLSVEHSGGPQSDWTVRDVHAGASGSTFSVV 312

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFV 349
             +G+       LPG F V NA +A  + +  GI+   V   LE        VPGR E V
Sbjct: 313 HRDGRSVRARTALPGSFNVANAALAIVMVVESGIEVGTVTAALEAAGGLSPAVPGRMEQV 372

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              S   R+ VD+AH  ++L + L  +R  T+GR++VVFG  G+RD  KRP+MG+IA++ 
Sbjct: 373 ---SDSPRVVVDFAHNPDALALALAALRPTTAGRLVVVFGATGERDTTKRPVMGRIAVEG 429

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQ 459
           AD+ +VTDD+P  E  + IRAE++ G              +E   R  AIR A+   + +
Sbjct: 430 ADVVVVTDDDPHGEAADGIRAEVLAGAREAAAQPGCDVDVLEAAPRALAIRAAVLAADDE 489

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           D ++VAG+GHE    + +G      D    R  + 
Sbjct: 490 DTVLVAGRGHEVWQEI-DGVDHPLDDRVEARAAVA 523


>gi|257870823|ref|ZP_05650476.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
 gi|257804987|gb|EEV33809.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
          Length = 504

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 125/501 (24%), Positives = 200/501 (39%), Gaps = 35/501 (6%)

Query: 11  FPELINQLSIF--PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E I Q   +  P +  +     +S DSR   A  +F    G       ++  A+AQG 
Sbjct: 21  LKEFIGQEWHYTVPQEMNDLIFTSLSYDSRQTDANTLFFC-KGAAFK-ESYLESAVAQGL 78

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           +  V    Y  ++ SA        ++V + R  ++  A   Y    + +  + +TGT GK
Sbjct: 79  QCYVSEHPY--ENCSAYG------IIVTDIRAAMACIAQAFYNNPQDQLFKIGITGTKGK 130

Query: 127 SSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +S A FV++I  ++       F     +      Q+  LTTP  + L   ++   + G+T
Sbjct: 131 TSCAYFVREILAKTTNQKVAFFSSEENTVDGKNYQEAVLTTPETLDLYAMMAEAVANGMT 190

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241
           H+ +E SS      R+ GI    G F N+  DHI    H     Y   K     EL+   
Sbjct: 191 HLVMEVSSQAYKTKRVSGITYEIGIFLNISPDHIGPVEHPDFDDYLFCK----RELIHNS 246

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---- 297
              II     Y + + +        +++ G       +    +   K    I  E     
Sbjct: 247 KQMIINRQSDYFELLKETCAAHQVPLITYGQCDGDYQVLPAESGDPKS-FRIHSEKDILL 305

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + D+   L GEF   NA  A       G         L  + +       V     G  
Sbjct: 306 VNGDYQLALLGEFNHDNATAAIVAACLAGATQEEAQSVLPNVTIPG--RMIVLEKQNGAL 363

Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           I VDYAH   S + + +   T+   GR+I V G  G + + +RP MG+   + AD   +T
Sbjct: 364 IIVDYAHNYLSFKSLSELAHTLRPKGRLIFVTGSAGGKAESRRPDMGRALSEYADKVYLT 423

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            D+P  EDP  I AEI   I        E+ +R  A+++A+     QD++++AGKG E  
Sbjct: 424 SDDPNFEDPRAIAAEIAAAITAPTVIIEEQMDRSLAVQSAVAEAASQDIVILAGKGAEQY 483

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V   ++    D  I + +L
Sbjct: 484 LKVNGQKEPYEGDLQIAQRLL 504


>gi|118586530|ref|ZP_01543973.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
 gi|118433034|gb|EAV39757.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
          Length = 499

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 131/514 (25%), Positives = 230/514 (44%), Gaps = 36/514 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHI-QAGWIFVAIVGNKEDGH 57
           M+ +D   +   E +N+  I   +  E  R+ +++  DSR + +   +FV + G  +   
Sbjct: 1   MR-EDFTNEIVTESLNEAGILVEKPSEIKRRFDDLQFDSRKVTKKNTLFV-VKGAFK--I 56

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  ++      IV S    +         N P  +V N++  L++ ++  +    + +
Sbjct: 57  EYLTASLLDKISGIVTSRTEKID------LPNLPHWIVSNSQIALAVLSAEFFVHPEKKL 110

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-----AQDNRLTTPSPIYL 170
             L +TGT GK+S       +  R   ++ Q    STI +F        + LTTP    L
Sbjct: 111 KILGITGTKGKTSSTYMAYSLLDRL--TNHQTAMFSTIDTFLGRGIKFKSELTTPESYEL 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228
              +      G  ++ +E SS    ++R+ GI    G+F N+  DHI    H T   Y  
Sbjct: 169 FSNMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFADYLA 228

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHN 287
            K  L E         +   DDA+ +E +  A + G + +SV    K      +  A  +
Sbjct: 229 HKKMLAEN----SDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKKADLD 284

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +    ++ +G   +FL  +PG F +YNA VA  +   +G       + L +L  +PGR  
Sbjct: 285 ESVFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQ-IPGRMV 343

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            + T S G  I VDYAH   ++  +L  +++    G+II+V G  GD+ + +R   G++ 
Sbjct: 344 KIKTKSHG-LIIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRSQFGEVI 402

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVL 462
               D+A +T D+P +EDP +I  +I   I        E+ +R +AI+ AI+  N  D++
Sbjct: 403 SKFVDVAYLTTDDPGTEDPHQINNQIRKAISNPDVELHEELDRSKAIQAAIKKANTNDLV 462

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           V+A KG +      + +     D  +  E L  I
Sbjct: 463 VLAAKGEDAFQKTNHVDVPYLGDKRVAEEFLAEI 496


>gi|309806638|ref|ZP_07700634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166943|gb|EFO69126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 519

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 109/495 (22%), Positives = 196/495 (39%), Gaps = 49/495 (9%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFR---PTYLSYAKENGAICYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V N  K +SL ++  Y    +++  +A TGT GK++ A F++ I  +   G ++   
Sbjct: 87  ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 146

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H   + Y + K+    +L+      II A   +  E+   A  
Sbjct: 207 DLGFFLNITPDHIGVNEHPNFEDYLHCKL----QLMVNSRKCIINAMTDHFDEIYAAATT 262

Query: 263 AGCRVLSVGYQGKFI-----------HLKKVCAIHNKQQVTISVEGK-------DFDFLF 304
                    +                    V     + +  +  E         + ++  
Sbjct: 263 TTNPDSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSL 322

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   NA  A       G++     + ++ +  +PGR E + T   G  + VDYAH
Sbjct: 323 KMIGDFNEINATAAIIGAGLAGVNYQDCYDGIKNVT-IPGRMETLTTAHHG-TVIVDYAH 380

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + +   S +IIVV G  GD+   +R    +     A+   +T D+P  E
Sbjct: 381 NKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFE 440

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           D + I  EI  GI       + + +R +AI  AI+     DV+++ GKG +    +   +
Sbjct: 441 DAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICGKGADPYQKIRGVD 500

Query: 480 KKMSVDCDIIREILG 494
                D  + +E++ 
Sbjct: 501 TPYPTDIKVAQEVIN 515


>gi|75764855|ref|ZP_00744223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74487658|gb|EAO51506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 297

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 102/293 (34%), Positives = 154/293 (52%), Gaps = 13/293 (4%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAHNA 263
           FTNL +DH+DYH+T + Y +AK  LF +L       +E  A++ +DD  ++E M+   + 
Sbjct: 2   FTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMR---ST 58

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              V++ G      I  K +         T+    +  +    L G+F VYN L A    
Sbjct: 59  AATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAAG 118

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +  G+    ++  +++L  VPGRFE V    +   + VDYAHT +SLE +LK  +    G
Sbjct: 119 LVSGVKLQTIIAVIKELAGVPGRFEVVD-GGQNYTVIVDYAHTPDSLENVLKTAKQFAKG 177

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  I  +++ G  G  + 
Sbjct: 178 DVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASGNNYE 237

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R EAI  AI  +   D++++AGKGHET  I+   E     D ++ +E +
Sbjct: 238 VIIDRKEAIHHAIANVKADDIIIIAGKGHETYQIIGK-EVHHFDDREVAKEAI 289


>gi|259501351|ref|ZP_05744253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
 gi|259167204|gb|EEW51699.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
          Length = 505

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 109/495 (22%), Positives = 197/495 (39%), Gaps = 49/495 (9%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 23  ISYDSRDIKTNTLFFCKGKGFR---PTYLSYAKENGAICYVAEQPYPE-------GKGMH 72

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V N  K +SL ++  Y    +++  +A TGT GK++ A F++ I  +   G ++   
Sbjct: 73  ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 132

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 133 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 192

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H   + Y + K+    +L+      II A   +  E+   A  
Sbjct: 193 DLGFFLNITPDHIGVNEHPNFEDYLHCKL----QLMVNSRKCIINAMTDHFDEIYAAATT 248

Query: 263 AGCRVLSVGYQGKFI-----------HLKKVCAIHNKQQVTISVEGK-------DFDFLF 304
                    +                    V     + +  +  E         + ++  
Sbjct: 249 TTNPDSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSL 308

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   NA  A       G++     + ++ +  +PGR E + T + G  + VDYAH
Sbjct: 309 KMIGDFNEINATAAIIGAGLAGVNYQDCYDGIKNVT-IPGRMETLTTANHG-TVIVDYAH 366

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + +   S +IIVV G  GD+   +R    +     A+   +T D+P  E
Sbjct: 367 NKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFE 426

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           D + I  EI  GI       + + +R +AI  AI+     DV+++ GKG +    +   +
Sbjct: 427 DAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICGKGADPYQKIRGVD 486

Query: 480 KKMSVDCDIIREILG 494
                D  + +E++ 
Sbjct: 487 TPYPTDIKVAQEVIN 501


>gi|300173159|ref|YP_003772325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887538|emb|CBL91506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysineligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 491

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 122/510 (23%), Positives = 215/510 (42%), Gaps = 43/510 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL     +    LI Q  +      +   + +  D+R ++A  + V + G       F 
Sbjct: 1   MKLTSKTIEQL--LIEQQLLVSKPNIDLAFDFLHYDTRQVKANTLLV-VKGA------FR 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI-RSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118
           P+         +  +A      + TI   + P   V N +K L++ +   +    + +  
Sbjct: 52  PE--------YLTHTADIEGLITETILDVSLPQWQVTNVQKALAVLSMAFFDYPQKALWI 103

Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQI-----GPTSTISSFAQDNRLTTPSPIYLAK 172
            A TGT GK++ A     I + +  +   +       T T     + + LTTP    L K
Sbjct: 104 GAFTGTKGKTTAAYMAFNILKDATNNHTALFSTVDRITGTGPGDKKKSDLTTPESYELFK 163

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAK 230
            +      G+TH+ +E SS    + R+ G++   G+F N+  DHI    H T + Y   K
Sbjct: 164 DMRQAVDNGMTHLIMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIGPNEHPTFEDYLAHK 223

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           M LF+         I+ A+  + K V+  A     +V +    G+  +   V       +
Sbjct: 224 MMLFDH----SDQVIVNAESEHLKTVLGHATQTHDKVYTYSLAGQGGNYSYVSRESAIHE 279

Query: 291 VTISVEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             + VE  D      ++   LPG+F   NA+ A  +    G     ++  L  +  +PGR
Sbjct: 280 SRLIVEPSDLNELAGEYRLNLPGDFNESNAMAALIMTALAGAKHENMVHGL-DVVFIPGR 338

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
              +     G   +VDYAH   S+  +L         G+++VV G  G++   +R   G+
Sbjct: 339 MLSLPIVGHGVA-FVDYAHNYASMRALLNFAQNQYPEGKVLVVVGSPGNKGVSRRADFGR 397

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460
           +  +LADI  +T D+P+ E P+ I  EI   I         + +RI+AI  AI+   ++D
Sbjct: 398 VVSELADIVYLTADDPQFESPKAIADEIAENINNKQLEVHFEMDRIKAIFQAIKQSGERD 457

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +++VAGKG +    +   +     D  +++
Sbjct: 458 IVIVAGKGEDPYQKINGKDVPYIGDYAVVQ 487


>gi|302336448|ref|YP_003801655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
 gi|301320288|gb|ADK68775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
          Length = 532

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 127/514 (24%), Positives = 217/514 (42%), Gaps = 40/514 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F E     S          +  V  DSRH   G +FV   GN      ++ QA+A G   
Sbjct: 25  FDEAGANGSGGAEGGVSADVCGVDCDSRHAAPGHLFVC-KGNAFR-ASYLAQALAAGCVG 82

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
            +   A + +   A      P LV  + R+ ++L ++  +G    N+  L +TGT GKS+
Sbjct: 83  YLCDEARAGE--LAAHCPQVPRLVSHDLRRAMALVSAEAWGHPDRNLGVLGITGTKGKST 140

Query: 129 VASFVQQIC------QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           VA  ++ I        R    +  +G   T      +++  TTP    L + L   ++ G
Sbjct: 141 VAYMLRSILDSDADGTRGAPHTGILGSIETFDGIEREESVNTTPEAPDLWRHLHNAATSG 200

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLP 239
           ++H+ +E SS  L   R+ G+ L    F N+G DHI    H + + YF +K+R+F++   
Sbjct: 201 LSHMVMEVSSQALKYDRVVGLGLDVACFLNIGCDHISPVEHPSFEDYFESKLRIFDQ--- 257

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK------------FIHLKKVCAIHN 287
               A++  D   +  +++RA     R ++    G+             +  + + +   
Sbjct: 258 -ACVAVVNLDSDKADVILERA-ARCGRTVTFSATGQGAGGAPAGAGGADVWAEGISSREG 315

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + Q+ +            +PG F   NAL A  +C A GI    V+  L ++  VPGR E
Sbjct: 316 RIQMMVRTPSWSEPVTVSMPGLFNADNALAAIAICEACGIGRERVVAGLARVR-VPGRME 374

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            + T        VDYAH   S +    ++ +      II V G  G +   +R  + + A
Sbjct: 375 LLPTADPKVTGIVDYAHNKLSYQRFFSSMAQEFAGRAIIAVLGAPGGKAYERRRELPQEA 434

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML---NKQD 460
              AD  I T+++P  +  E+I +++    P    F    +R  AIR A+E+     +  
Sbjct: 435 SKWADYLIYTEEDPAGDPVEEICSQLAAATPAGQDFEVIVDRPAAIRRAVELAFGYPQGA 494

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           ++ +  KG ET+  V N       D  +    +G
Sbjct: 495 LVCLLAKGDETLQHVGNSFVPCETDGTLFERAVG 528


>gi|256851857|ref|ZP_05557245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661882|ref|ZP_05862792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931965|ref|ZP_06337429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297205481|ref|ZP_06922877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615815|gb|EEU21004.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547351|gb|EEX23331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303907|gb|EFA96045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297150059|gb|EFH30356.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 516

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 116/494 (23%), Positives = 199/494 (40%), Gaps = 49/494 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR IQ   +F    G        ++  A   GA   V    +              
Sbjct: 34  ISYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKDNGATCYVAEQPFPE-------GKGMH 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            LVV +  K ++L ++  Y    +++  +A TGT GK++ A F++ I  +   G ++   
Sbjct: 84  ALVVRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFS 143

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260
             G F N+  DHI    H     Y + K+    +LL      II A+  +  EV   A  
Sbjct: 204 DLGFFLNITPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETDHFPEVYAAATT 259

Query: 261 ---HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------DFDFLF 304
               ++       GY+   + +       +++   I  + +             + ++  
Sbjct: 260 TTNPDSIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTL 319

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G +     E +  +  + GR E   T + G  + VDYAH
Sbjct: 320 DMIGDFNEINGTAAIIGAGLGGANHEHASEGIRHVT-ISGRMETEKTKNHG-LVVVDYAH 377

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  ++   ++ +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 378 NKASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVFADKAFLTTDDPGFE 437

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP  I  EI  GI         + +R +AIR AI M  K DV+++ GKG +    +    
Sbjct: 438 DPMDIAEEIDAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICGKGADPFQKIRGVN 497

Query: 480 KKMSVDCDIIREIL 493
                D  + R  +
Sbjct: 498 TPYPSDIVVARNAI 511


>gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfotomaculum reducens MI-1]
 gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfotomaculum reducens MI-1]
          Length = 457

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 100/469 (21%), Positives = 179/469 (38%), Gaps = 36/469 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E+   +    +Q     KI  + +DSR  +   +FVA+ G + DGH F  +AI
Sbjct: 1   MLTYTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            QGA A++VS   +       I    P+++V NT + L   AS    +    ++AVTG++
Sbjct: 61  EQGASALLVSREIT------GIAPQIPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    +  +         +     T  +F                 L       V  
Sbjct: 115 GKTSTKDMIAAVLNT------RFKTLKTEGNF-------NNELGLPLTLLGLGEEHQVAV 161

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +     G         K      TN+G  H++   + +    AK  +    + ++  A
Sbjct: 162 VEMGMRGPGEIDFLAGLAKPTGAVITNIGEAHLERLGSVENIALAKTEVLAH-IGRDGFA 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+ AD  Y  E+   A N   +V     +G   +    +       +  IS  G   +  
Sbjct: 221 ILNADSPYLGEL---ARNCQGKVWLYSLEGIGDLQASNIRPEGTGVRFNISSPGGKEEIY 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   V N+L A G+ + +G+    + + L +L +   R + + +N R   I   Y 
Sbjct: 278 LPVPGSHNVMNSLAAIGVGLQLGLQLEEIAQGLAQLCLTHSRLQILSSNGR-VIINDTYN 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNP 420
              +S +  LK ++     R I V G      D +Q     +G+ A  +    +++  N 
Sbjct: 337 ANPSSTKAALKVLKETARSRKIAVLGNMYELGDLEQSGHQEVGEAAAAIPVDYLISVGNL 396

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                + I    + G        +     EA+    ++L   D ++V G
Sbjct: 397 A----QWITQGGLKGGLSQERVFQCQENSEAVEVLGKILKPGDTILVKG 441


>gi|254458836|ref|ZP_05072260.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
 gi|207084602|gb|EDZ61890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
          Length = 431

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 121/479 (25%), Positives = 213/479 (44%), Gaps = 57/479 (11%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++   ++   VS +S    A   FV +    +    ++  A   GA +I+     +++D 
Sbjct: 3   IELPNQEYKYVSENSSECGADTAFV-LSAQNK---KYLQDAKDNGAHSII-----NIKDI 53

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                                   + L+G     I+ +TGT+GK++ AS +       G 
Sbjct: 54  ------------------------AELFGIDKIKIVGITGTNGKTTTASAIYSFLLDLGY 89

Query: 143 SSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            +   G      +    +   LTTPS +   K +      G     +E SSH + Q R++
Sbjct: 90  KTAMQGTRGFFMNDEVIEGKSLTTPSVLNTYKHIYQAVESGCEFFIMEVSSHAIAQERIE 149

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+K      TN+ +DH+DYH+T   Y   K   F++    E   +I  D+  S   +K  
Sbjct: 150 GLKFELKILTNITQDHLDYHKTIGEYIAVKNSFFQD----EGKKLINKDEPRSAFNIKN- 204

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA- 319
                   + G +    +     +++N     I    +   F   L G F +YN + A  
Sbjct: 205 ------TFTYGIENPASYKLMAYSLNNASSGIIQHFKEVVPFTSSLHGFFNLYNLMAAIG 258

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + + +      ++E ++    V GR E V        + VD+AHT + ++ +L  ++  
Sbjct: 259 AVDLLVDEKLEKIVEVVDNFAGVSGRMEQVCELPN---VIVDFAHTPDGMQQVLNALKE- 314

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
               ++VVFG GGDRD+ KRP+MG++A  LA    +T DNPR+EDP+ I  +I+ GI   
Sbjct: 315 --KELLVVFGAGGDRDKQKRPLMGRVAASLAKKVYITSDNPRNEDPQAIVDDILEGIEDR 372

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                + NR +AI  A++   + +V+V+ GKG E   I+ + +     D +++RE+L +
Sbjct: 373 SIVSVELNRKKAIEMALDDQGEGEVVVILGKGDEAFQIIYDKQFP-FDDREVVRELLNI 430


>gi|325971615|ref|YP_004247806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
 gi|324026853|gb|ADY13612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
          Length = 493

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 131/501 (26%), Positives = 213/501 (42%), Gaps = 29/501 (5%)

Query: 9   KDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K    L+  + I    Q     I  +S  S+   A  +F A  G + DG L+I +AI  G
Sbjct: 2   KTLRTLLEAIGIDSTPQNASILIETISQHSKQCTANSVFFAFHGLRTDGILYIQEAIEHG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A  I+     S  +  A ++ +     V       +L  S L     + +  + V+GT G
Sbjct: 62  AVCIISDQNLSNLNLPAKVQWH----QVHKPHTAFALMCSALNDNSQDKLGIIGVSGTDG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           KS+   ++ QI + +G+ +  +   S            R +TP P  L   L       V
Sbjct: 118 KSTTCDYLYQILEANGVKTGLLTTVSMDDGSGKVDSPFRQSTPEPDQLHVFLRRCVENKV 177

Query: 183 THVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             V +E +SH L     RL GI   A   T +  +H+++H + + Y  AK+ L   L  K
Sbjct: 178 QKVILECTSHALSDTFDRLAGIHFEAAIVTKVTSEHLEFHHSLEEYTQAKVNLVRSL--K 235

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + + D    E       +  + L +G       +         Q V + +  +  
Sbjct: 236 DGGLFVTSTDNAKLEAFTAELRSTTKALILG-----KDVMLRIEFMGYQGVVVDILDQRI 290

Query: 301 DFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                LP      NAL+A       +GID   +L  ++ L  V GR + +  N+ G R  
Sbjct: 291 QTSLLLPSL--ATNALLATFCASHLLGIDVTALLVLIKSLKPVKGRMQQI-ENTLGVRTI 347

Query: 360 VDYAHTSNSLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +D+AHT+++ + +     RT   G II VFGC G+RD  KR  MGKIA       I+T++
Sbjct: 348 IDFAHTADAYDGIFFFAKRTCEGGDIIAVFGCAGERDTSKRSPMGKIANKYCSTIILTEE 407

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +PR E  ++I +++   +        E  +R EAIR A+ +    D L+  GKGHE    
Sbjct: 408 DPRREGNQQIFSDLRFHMNNPACRVWEIESRREAIRKAVSIAQCGDTLLFLGKGHEKTIE 467

Query: 475 VTNGEKKMSVDCDIIREILGL 495
             +G+     + + +   L L
Sbjct: 468 RMDGKISW-DEVEEVEMALRL 487


>gi|290890409|ref|ZP_06553484.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
 gi|290479805|gb|EFD88454.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
          Length = 499

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 130/511 (25%), Positives = 229/511 (44%), Gaps = 36/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHI-QAGWIFVAIVGNKEDGH 57
           M+ +D   +   E +N+  I   +  E +   +++  DSR + +   +FV + G  +   
Sbjct: 1   MR-EDFTNEIVTESLNEAGILVEKPSEIRRHFDDLQFDSRKVTKKNTLFV-VKGAFK--I 56

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  ++      IV S    +         N P  +V N++  L++ ++  +G   + +
Sbjct: 57  EYLTASLLDKISGIVTSRKEKIN------IPNLPHWIVSNSQIALAVLSAEFFGHPEKKL 110

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-----AQDNRLTTPSPIYL 170
             L +TGT GK+S       +  R   ++ Q    STI +F        + LTTP    L
Sbjct: 111 KILGITGTKGKTSSTYMAYSLLDRL--TNHQTAMFSTIDTFLGRGIKFKSELTTPESYEL 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228
              +      G  ++ +E SS    ++R+ GI    G+F N+  DHI    H T   Y  
Sbjct: 169 FSNMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFADYLA 228

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHN 287
            K  L E         +   DDA+ +E +  A + G + +SV    K      +  A  +
Sbjct: 229 HKKMLAEN----SDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKKADLD 284

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +    ++ +G   +FL  +PG F +YNA VA  +   +G       + L +L  +PGR  
Sbjct: 285 ESIFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQ-IPGRMV 343

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            + T S G  I VDYAH   ++  +L  +++    G+II+V G  GD+ + +R   G++ 
Sbjct: 344 KIKTKSHG-LIIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGKDRRSQFGEVI 402

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVL 462
               D+A +T D+P +EDP +I  +I   I        E+ +R +AI+ AI+  N  D++
Sbjct: 403 SKFVDVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKANINDLV 462

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           V+A KG +      + +     D  +  E L
Sbjct: 463 VLAAKGEDAFQKTNHVDVPYLGDKKVAEEFL 493


>gi|241896418|ref|ZP_04783714.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
 gi|241870398|gb|EER74149.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
          Length = 518

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/519 (24%), Positives = 218/519 (42%), Gaps = 45/519 (8%)

Query: 3   LQDLIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L  L   +   L+ +Q  +      + +I  ++ +S  +  G +   I GN +    ++ 
Sbjct: 10  LMTLTADNITTLLADQDLLISAPDFDGEIQHLAYNSNDVVPGTLLF-IKGNFK--AEYLT 66

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
            AI +G  AI+  +++          +  P  V D+    +S+ A   Y     N+  + 
Sbjct: 67  DAIEKGVTAIIAPASFKH-------ATKLPTWVADDVPAAMSIIAMAFYQYPQNNLALIG 119

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-----FAQDNRLTTPSPIYLAKAL 174
           +TGT GK+S A    +I +        +  T  + +     +     LTTP  + L + +
Sbjct: 120 ITGTKGKTSTAYMAYEILRAYTHDKVALSSTLQVITGSEPQYHYRAHLTTPESVDLFRWM 179

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMR 232
                 G+TH+ +E SS      R+ G+    G F N+  DHI    H T + Y   KM 
Sbjct: 180 REAVDNGMTHMVMEVSSQAFKMRRVYGLHFNVGIFLNISPDHIGENEHPTFEDYLQHKMM 239

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQG-----KFIHLKKVCAI 285
           LF+         ++  D  +  E++  A     R  +   G +        ++ +   A 
Sbjct: 240 LFDH----SEQIVLNVDSDHFGELIAHAELMVHRDGIWLYGQEDVDSPKADVYFEATDAN 295

Query: 286 HNKQQVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +     +   G+         ++   +PG+F   NAL A      +G D+  + E LE 
Sbjct: 296 LHGSVFKVREVGQQAEHLHIKGEYTLDMPGDFNQSNALAAMIATRLVGADAPAMAEGLET 355

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQG 397
           +  VPGR + + T   G  IYVDYAH   S+  +L+ +R   S  ++ +V G  G++   
Sbjct: 356 VK-VPGRMQVLNTQKHG-TIYVDYAHNYASIAALLQFVRQNESVNQLAIVVGAPGNKGVS 413

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI 453
           +RP +GK   + AD+  +T D+P+ EDP KI  EI   I         + +R +AI  AI
Sbjct: 414 RRPGIGKAVSEGADVVYLTSDDPQYEDPAKIADEIQAAITNPKVTIYRELDRTKAIIAAI 473

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 DV+V+A KG +    +   +     D  +   I
Sbjct: 474 LAAGPDDVVVLAAKGLDEYQKIDGVDTPYENDWAVANRI 512


>gi|326803791|ref|YP_004321609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651729|gb|AEA01912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 504

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 121/516 (23%), Positives = 216/516 (41%), Gaps = 43/516 (8%)

Query: 8   YKDFPELINQLSIF-----PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
            K   E+   L        P+   +  +  +S +S+ +  G +F    G       ++ Q
Sbjct: 2   KKTLREICRLLDERGQLKSPLLTSQASVQNLSYNSKAVSEGTLFFC-KGAHFK-PAYLEQ 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A A GA A V    Y L         +  ++ V++ R  + + A   Y    +  ++  +
Sbjct: 60  AQALGAIAYVSEQDYGL---------DLYLIQVEDIRLAMPIIADFFYQAPYQAFHLTGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD------NRLTTPSPIYLAKAL 174
           TGT GK++   ++ +I      S  +       SS   D      + LTTP  + L    
Sbjct: 111 TGTKGKTTTTFYLTKILDLYQESLGKEPTAYLSSSSYYDGVDQGESHLTTPESLELFYRF 170

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMR 232
           +++    +  +++E SS  L  HR+  +    G+F N+  DHI    H   + YF +K++
Sbjct: 171 NHVRESAIDFMTMEVSSQALKYHRVAEVPFEVGAFLNISTDHISPSEHPNFEDYFMSKLK 230

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAG----CRVLSVGYQGKFIHLKKVCAIHNK 288
           LF++       A+I  D  +   + +RA ++        +S   +      K + +  ++
Sbjct: 231 LFDQ----SQLAVINLDADHIDRIYQRASDSKTVKKIVTVSTKDEKADYLAKNIVSGSDQ 286

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q   +     + +    + G F V NALVA  +     +   ++ + L +     GR E 
Sbjct: 287 QHFVLHAPDFEGEIRMKMLGRFNVENALVAIAIARYYQVPYEIIKKAL-QAAQTEGRMEV 345

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIAL 407
             +  +     VD+AH   SLE + +  R +      IVVFG  GD+   +R  +G++A 
Sbjct: 346 YHSTDKRIHAIVDFAHNKLSLEKLFEASRQMYPKAHSIVVFGSAGDKAISRRKDLGEVAA 405

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQD--- 460
             AD  I+T D+P +E  EKI  EI   I           NR +AI  A +  +  D   
Sbjct: 406 QYADEIILTMDDPGTESVEKICQEINQPIQAAQRQAKIIPNRPQAIDYAFQQASAYDGEV 465

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           V+++AGKG E    +   ++    D   +++ L  I
Sbjct: 466 VVLIAGKGDEDTMKINGVDQAYPTDRYYVKQALEEI 501


>gi|295093595|emb|CBK82686.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp.
           ART55/1]
          Length = 507

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 111/525 (21%), Positives = 206/525 (39%), Gaps = 56/525 (10%)

Query: 1   MKLQDLIYKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK ++L +    +++   + ++ +    ++   + ++ +S+ +  G  FV   G      
Sbjct: 1   MK-ENLQFTALLDILSRQDLITEYSEDCKDITPSHITINSKDVVPGTFFVC-KGASFK-E 57

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  AIAQGA   +    Y           + P ++V++ RK ++L A   +G   +N+
Sbjct: 58  DYLKSAIAQGAIVYLSQQKYD--------DVDIPYIIVNDIRKAMALAARWFFGNPGDNM 109

Query: 118 LAVTG----------TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             V               K  +  +    C         +G          +  LTTP P
Sbjct: 110 TKVGITGTKGKTTVTFVMKDILDKYTDNRCSAFSTHEIDVGT------KVFETTLTTPEP 163

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           I L         +G TH  +E SS  +  +R+ G     G FTN+  DHI    H + + 
Sbjct: 164 IELQTYFDMAVDEGCTHCIMEVSSQAMKMNRIYGEHYKVGVFTNIDYDHISPTEHASMED 223

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------------V 270
           Y   K+      L +    ++Y+D  Y + +     +    V                  
Sbjct: 224 YLGCKVSF----LKQCDNVVLYSDTRYFETIYNEVRDKHVVVYGSKESIEKLMSRDDDFF 279

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                F  +       +     +   G++  +   L G++ V N + A    + IGI + 
Sbjct: 280 EKDTDFASIHNEDLTDHNSYFELIYGGENRAYNTNLIGDYNVENIVAAIISSLLIGIPND 339

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFG 389
            +   +  ++ VPGR +      R     +DYAH   S+  +     +T+    I VVFG
Sbjct: 340 QIRSSIRDVY-VPGRLQVYHWKDR--TFMIDYAHNYISMYRLYEMVKKTMKPKSITVVFG 396

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEA 448
           CGG+R + +R  MG++A   AD  ++T ++P  E  E+I  EI   I        +R +A
Sbjct: 397 CGGERYKKRREDMGRLAEQYADKVVLTMEDPGFESCEEICKEIKQYITKPCYIIVDREQA 456

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +  A++     ++++  GKG E+   +     +   D  +I   L
Sbjct: 457 LTRALDEAQPGELVITTGKGIESTQRINGTFVQCHSDAQVIEHWL 501


>gi|291521934|emb|CBK80227.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 514

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 107/511 (20%), Positives = 207/511 (40%), Gaps = 34/511 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQW----RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           +++   K++ +L++ + +          E  I  ++ DSR +  G +F+   G       
Sbjct: 1   MKNYTLKEYADLLSSVDMLAEAEMMGRDETVITYLTYDSRAVTPGTLFIC-KGAAFK-EQ 58

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++  AI  GA A V    Y  +       +  P L+V + RK +   A   + K  + + 
Sbjct: 59  YLENAIRAGAVAYVSEVQYETE-------TKVPCLIVKDIRKAMPPLAEMYFNKAWQELT 111

Query: 118 -LAVTGTSGKSSVASFVQQI----CQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
            +   GT GKS+ A +++ I       +G     +            Q++ +TTP  + L
Sbjct: 112 VIGFGGTKGKSTSAYYMKAIVDDYMAATGGKESAVLSSIDIYDGVIRQESHITTPESVEL 171

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228
            + + +    G+T++ +E SS  L   R++ ++     + N+  DHI    H+  + Y +
Sbjct: 172 HEHMRHAVDSGITYLEMEVSSQALKYDRVNNMQFDVAVYLNISEDHISPIEHKDFEDYIS 231

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHN 287
           +KM++F         A++  D  + +  +K A +A   +  S+       +   +     
Sbjct: 232 SKMKMFA----LAKQAVVNLDADFVERALKAAEDAGSFKTFSLKDPSADFYGYNIHKEDG 287

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +   ++  +  D  F   +PG F V NA+        + I    +   L +     GR E
Sbjct: 288 EIIFSVKCDKFDETFSLTMPGLFNVENAVAVVAAATLLNIPLEYIKSGLHRARS-SGRME 346

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              +  +     VDYAH   S E +            I+ +FGC G +   +R  +G IA
Sbjct: 347 LYTSADKRVTAVVDYAHNKLSFEKLFGSTREEYPDHDIVAIFGCPGYKAYIRRKDLGLIA 406

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVL 462
            + +    +  ++P  E  ++I  +I   +      +    +R  AI  AI    +  VL
Sbjct: 407 GEYSKKVYLVAEDPGKEPVQQISEDIAQYVAQKNCPYEIIEDRGVAIHKAIMECKRPTVL 466

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++ GKG+ET             D + ++E L
Sbjct: 467 LITGKGNETRQKYGTIYADCRTDVEYVKEYL 497


>gi|315641870|ref|ZP_07896862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
 gi|315482438|gb|EFU72978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
          Length = 514

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/518 (21%), Positives = 204/518 (39%), Gaps = 42/518 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWR---------ERKINEVSSDSRHIQAGWIFVAIVGN 52
           KL+D+      E + +  I   QW          +   + +S DSR      +F    G 
Sbjct: 14  KLKDIYAVLLREKMLKEVIIQQQWHITLPDHPIVDHVFHSLSYDSREADEATLFFC-KGQ 72

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           +    +F+ QA+  G +  V    Y   D           L+V + R+ +++ A   Y  
Sbjct: 73  QFK-EVFLEQAVTGGVKVYVSEQPYDSIDAVG--------LIVTDIREAMAMIAQFFY-D 122

Query: 113 HPENILA---VTGTSGKSSVASFVQQICQRSGLSS---FQIGPTSTISSFAQDNRLTTPS 166
           HPEN L    +TGT GK+S A F++   +++       F    T+        + LTTP 
Sbjct: 123 HPENKLTKIGITGTKGKTSCAYFLKDSLEQATNHKTALFSSEETTLDGVHYTRSHLTTPE 182

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQ 224
            + L K ++     G+TH+ +E SS      R+ G+    G F N+  DHI    H T  
Sbjct: 183 ALDLYKQMAKAVENGLTHLVMEVSSQAYKTKRVFGLTFELGIFLNISPDHISPIEHPTFD 242

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVC 283
            Y   K     +L+      I+ AD  Y + + +         ++ G      + ++   
Sbjct: 243 DYLYCK----RQLIQHSKQMILNADSDYFELLAETCTLYHVPYVTFGRSLTVDVEIQDAT 298

Query: 284 AIHNKQQV--TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              +   +  T+S    +  +   + G F   NA  A  +   +G    +  + +     
Sbjct: 299 DTRSFDLIAHTLSFSDLEGGYRLAILGTFNHDNATAALLVSHLLGFSEKISRQAIAN--T 356

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRP 400
           V      V        I +D+AH   S++ + +    +     +++       +   +R 
Sbjct: 357 VIPGRMHVIDEPNQPLILIDFAHNYLSIKAVGELGHHLRPNGKVIILTGSTGGKALSRRA 416

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456
            + K   ++AD AI+T D+P  EDP  I  EII  I         +  R +AI  A+   
Sbjct: 417 DIAKALSEIADEAILTSDDPNFEDPAAIAKEIISHIDNDALSITVETQREKAIAIALSHA 476

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +D++ + GKG E    +    +    D ++++++L 
Sbjct: 477 TTEDIVAICGKGTEKEMKINGLGEPYPGDYEVVQQLLN 514


>gi|227495120|ref|ZP_03925436.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831572|gb|EEH63955.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 486

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 122/489 (24%), Positives = 208/489 (42%), Gaps = 31/489 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            +       +   +VS +S+ +  G +FV   G K +   ++ +AI  GA A +   AY 
Sbjct: 17  ELIADTLTNQVFTQVSYNSKKVIPGALFVC-KGAKFN-VAYLEEAIENGALAYISEVAYP 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
           +             + V + R  +   A+  Y        +  +TGT GKS+   F+Q+I
Sbjct: 75  VA---------AAWIQVKDIRVAIPKLANAFYTTPFAAFQLTGITGTKGKSTTTIFLQRI 125

Query: 137 CQR----SGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                  +G +S  I   +T      +    TTP P+ L +         +  V++E SS
Sbjct: 126 LDTYLANTGKTSGIISSINTYDGIVNEESSLTTPEPLELFEHFHNARQSALPFVTMEVSS 185

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL  HR+ G+    G F N+ +DHI    H   + YF +K+ LF+++       +I  D
Sbjct: 186 QGLKYHRVGGVLFDVGVFLNIDKDHISAIEHPDFEDYFQSKLMLFKQV----KHLVINLD 241

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            A    V+  A  A   V ++                +   +   V G++ D    + G 
Sbjct: 242 SAEIDRVLA-AIPAHVTVTTISASNPAADFCATNISTDGYSIKFQVSGEEID--LGISGL 298

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V NAL A  +    GI    + E L ++  VPGR E     +      VDYAH   S 
Sbjct: 299 FNVENALAAIAVARHYGIPFTAIKEALSEIR-VPGRMELFIGENPNLVTIVDYAHNRLSY 357

Query: 370 EMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           E + ++      G   I++FGC G +   +R  + +++ + AD  I+T ++P +E   +I
Sbjct: 358 ERLFQSCEESFPGFKKIIIFGCPGHKALNRRVDLAEVSDEYADHIILTMEDPNAEPVSEI 417

Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            A+I   +         +R+E+   A+ ++  + V++  GKG ET H +         D 
Sbjct: 418 SADIAKNVKHTPVSIVDDRVESFAYALSLVEGKTVILFVGKGDETTHKIHGKAVPYPSDV 477

Query: 487 DIIREILGL 495
           +I+R  L L
Sbjct: 478 EIVRGALNL 486


>gi|229550849|ref|ZP_04439574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|258538439|ref|YP_003172938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|229315799|gb|EEN81772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|257150115|emb|CAR89087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 517

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 121/501 (24%), Positives = 204/501 (40%), Gaps = 51/501 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQDFS 83
            +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   +  
Sbjct: 27  EDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEGN-- 80

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                    L+V N  K +++ ++  +    +++  +A TGT GK++ A F + I   + 
Sbjct: 81  -----GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEAR 135

Query: 142 LSS-FQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                      T+     D R      TP  + L + +      G+TH+ +E SS    +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLR 195

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +R+ G+    G F N+  DHI    H T   Y + K+    +LL      +I A+  +  
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFD 251

Query: 255 EVMKRAHNAGCR-----VLSVGYQGKFIHLKKV------CAIHNKQQVTISVEGKD---- 299
           +V   A             S G++ K   +          A   + + T+    +     
Sbjct: 252 QVYAAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAAL 311

Query: 300 ---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G+F   NA  A       G+D++  +  + K+  +PGR E       G 
Sbjct: 312 NIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVK-IPGRMEHFQVPGHG- 369

Query: 357 RIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +YVDYAH   S++ +L    R+    R++VV G  GD+   +RP   K+  +LA  A +
Sbjct: 370 TVYVDYAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFL 429

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T D+P  EDP  I  EI   I     K     +R EAI  AI+    +DV+VVAGKG + 
Sbjct: 430 TTDDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADP 489

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
              +         D  +++E+
Sbjct: 490 YQKIRGVNTPWPTDMAVVKEV 510


>gi|28572693|ref|NP_789473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Tropheryma whipplei TW08/27]
 gi|46577004|sp|Q83HJ9|MURE_TROW8 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|28410825|emb|CAD67211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei TW08/27]
          Length = 509

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 131/502 (26%), Positives = 222/502 (44%), Gaps = 23/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DLI +    L +  +    Q+ +R ++ ++  ++ ++   IFVA  G    G  F+ 
Sbjct: 9   RLSDLIKQTGVRLTDCSN----QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLD 64

Query: 62  QAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           Q   Q   A++       +         +TPILV D+ R  L + A R+Y      I  +
Sbjct: 65  QV--QSCAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGI 122

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK+S      ++ +  G+S   I  T   S+   D+ LTTP    L   +      
Sbjct: 123 TGTNGKTSTMHIAAKLLEMMGISCG-ISTTIGSSASESDSCLTTPELCQLYARIFTAKQA 181

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                ++EASSH +++ RL  I L   +FTNL  +H++ H+  +AY+ AK  LF  L  +
Sbjct: 182 RADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALF--LNKR 239

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTI-SV 295
            + A+I  D  Y   + K        V+S     G   K      V  +      T+ S 
Sbjct: 240 SNSAVINIDTPYGIRLFKE-TGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISP 298

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTN 352
            G   +    L G+    N  +A  +   +GID   +   L K   L +V      V   
Sbjct: 299 SGYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQT 358

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               R+ VD+ HT +++E  L   ++IT GR+I +    G RD  KR  +G++    +D 
Sbjct: 359 GNSPRVIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDK 418

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +TD + R E+P +IR  I+ G+ G      +  +  +A+  AI++    D ++ +G G
Sbjct: 419 LFITDGHSRFENPAEIRRMILDGVEGPRKQVEQIPSMTQAVLAAIDIAKSDDTVLCSGFG 478

Query: 469 HETVHIVTNGEKKMSVDCDIIR 490
            +    V   +   S+  ++ R
Sbjct: 479 DDPYLDVLGKKIPYSLRDEVRR 500


>gi|328464396|gb|EGF35805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 523

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 115/497 (23%), Positives = 199/497 (40%), Gaps = 49/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           VS DSR IQ   +F    G        ++  A   GA   V    Y              
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKDNGAICYVAEQPYPE-------GKGMH 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V +  K ++L ++  +    +++  +A TGT GK++ A F++ +  ++  G ++   
Sbjct: 84  ALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALIS 143

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                I    +D+     TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVNDVIGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H     Y + K+    +LL      II A+ A+  EV   A  
Sbjct: 204 DLGFFLNISPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETAHFNEVYAAATT 259

Query: 263 AGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLF 304
                 +     +       KV          + ++   F                D+  
Sbjct: 260 TTNPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTL 319

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G++     + +  +  +PGR +   T + G  + VDYAH
Sbjct: 320 KMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKNHG-MVVVDYAH 377

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  ++    + +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 378 NKASMMALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFE 437

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  EI  GI         + +R +AI  AI M    DV+++ GKG +    +    
Sbjct: 438 DPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGADAFQKIRGVN 497

Query: 480 KKMSVDCDIIREILGLI 496
                D  + +E++  +
Sbjct: 498 TPYPSDIVVAQEVINEL 514


>gi|46577003|sp|Q83GN3|MURE_TROWT RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
          Length = 509

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 131/502 (26%), Positives = 222/502 (44%), Gaps = 23/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DLI +    L +  +    Q+ +R ++ ++  ++ ++   IFVA  G    G  F+ 
Sbjct: 9   RLSDLIKQTGVRLTDCSN----QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLD 64

Query: 62  QAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           Q   Q   A++       +         +TPILV D+ R  L + A R+Y      I  +
Sbjct: 65  QV--QSCAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGI 122

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK+S      ++ +  G+S   I  T   S+   D+ LTTP    L   +      
Sbjct: 123 TGTNGKTSTMHIAAKLLEMMGISCG-ISTTIGSSASESDSCLTTPELCQLYARIFTAKQA 181

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                ++EASSH +++ RL  I L   +FTNL  +H++ H+  +AY+ AK  LF  L  +
Sbjct: 182 RADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALF--LNKR 239

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTI-SV 295
            + A+I  D  Y   + K        V+S     G   K      V  +      T+ S 
Sbjct: 240 SNSAVINIDTPYGIRLFKE-TGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISP 298

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTN 352
            G   +    L G+    N  +A  +   +GID   +   L K   L +V      V   
Sbjct: 299 SGYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQT 358

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               R+ VD+ HT +++E  L   ++IT GR+I +    G RD  KR  +G++    +D 
Sbjct: 359 GNSPRVIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDK 418

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +TD + R E+P +IR  I+ G+ G      +  +  +A+  AI++    D ++ +G G
Sbjct: 419 LFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSGFG 478

Query: 469 HETVHIVTNGEKKMSVDCDIIR 490
            +    V   +   S+  ++ R
Sbjct: 479 DDPYLDVLGKKIPYSLRDEVRR 500


>gi|199597925|ref|ZP_03211350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|258507252|ref|YP_003170003.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
 gi|199591182|gb|EDY99263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|257147179|emb|CAR86152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus GG]
 gi|259648618|dbj|BAI40780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
          Length = 517

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 121/501 (24%), Positives = 204/501 (40%), Gaps = 51/501 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQDFS 83
            +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   +  
Sbjct: 27  EDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEGN-- 80

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                    L+V N  K +++ ++  +    +++  +A TGT GK++ A F + I   + 
Sbjct: 81  -----GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEAR 135

Query: 142 LSS-FQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                      T+     D R      TP  + L + +      G+TH+ +E SS    +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLR 195

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +R+ G+    G F N+  DHI    H T   Y + K+    +LL      +I A+  +  
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFD 251

Query: 255 EVMKRAHNAGCR-----VLSVGYQGKFIHLKKV------CAIHNKQQVTISVEGKD---- 299
           +V   A             S G++ K   +          A   + + T+    +     
Sbjct: 252 QVYAAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAAL 311

Query: 300 ---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G+F   NA  A       G+D++  +  + K+  +PGR E       G 
Sbjct: 312 NIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVK-IPGRMEHFQVPGHG- 369

Query: 357 RIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +YVDYAH   S++ +L    R+    R++VV G  GD+   +RP   K+  +LA  A +
Sbjct: 370 TVYVDYAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFL 429

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T D+P  EDP  I  EI   I     K     +R EAI  AI+    +DV+VVAGKG + 
Sbjct: 430 TTDDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADP 489

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
              +         D  +++E+
Sbjct: 490 YQKIRGVNTPWPTDMAVVKEV 510


>gi|28493192|ref|NP_787353.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
 gi|28476233|gb|AAO44322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
          Length = 531

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 131/502 (26%), Positives = 222/502 (44%), Gaps = 23/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DLI +    L +  +    Q+ +R ++ ++  ++ ++   IFVA  G    G  F+ 
Sbjct: 31  RLSDLIKQTGVRLTDCSN----QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLD 86

Query: 62  QAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           Q   Q   A++       +         +TPILV D+ R  L + A R+Y      I  +
Sbjct: 87  QV--QSCAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGI 144

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK+S      ++ +  G+S   I  T   S+   D+ LTTP    L   +      
Sbjct: 145 TGTNGKTSTMHIAAKLLEMMGISCG-ISTTIGSSASESDSCLTTPELCQLYARIFTAKQA 203

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                ++EASSH +++ RL  I L   +FTNL  +H++ H+  +AY+ AK  LF  L  +
Sbjct: 204 RADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALF--LNKR 261

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTI-SV 295
            + A+I  D  Y   + K        V+S     G   K      V  +      T+ S 
Sbjct: 262 SNSAVINIDTPYGIRLFKE-TGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISP 320

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTN 352
            G   +    L G+    N  +A  +   +GID   +   L K   L +V      V   
Sbjct: 321 SGYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQT 380

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               R+ VD+ HT +++E  L   ++IT GR+I +    G RD  KR  +G++    +D 
Sbjct: 381 GNSPRVIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDK 440

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +TD + R E+P +IR  I+ G+ G      +  +  +A+  AI++    D ++ +G G
Sbjct: 441 LFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSGFG 500

Query: 469 HETVHIVTNGEKKMSVDCDIIR 490
            +    V   +   S+  ++ R
Sbjct: 501 DDPYLDVLGKKIPYSLRDEVRR 522


>gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
 gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
          Length = 487

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 190/495 (38%), Gaps = 68/495 (13%)

Query: 13  ELINQLSIFPM-----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           E+   LS+ P      Q  +++I  V +DSR ++ G +F+A  G + D H F+P+A+AQG
Sbjct: 17  EICEVLSVRPPAGVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFVPKALAQG 76

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A   +V   Y L    A  R+  P+L+ V +T +     A+    + P  ++A+TG++GK
Sbjct: 77  AVCAIVQEDYRLP--PAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAITGSNGK 134

Query: 127 SSVASFVQQI-------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++    V Q+        +  G  + +IG   T+                          
Sbjct: 135 TTTKEMVAQVVAQRWKTLKTEGNLNNRIGVPQTL--------------------FQLAPR 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +     G      +  +   G  TN+G DH+++  + +    AK  L + L P
Sbjct: 175 HQAAVIEMGVDQQGQTTRLCEIARPTIGVITNIGPDHLEFFGSMEGSAQAKAELLDHL-P 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEG 297
           ++   ++ ADD Y   +  RA    CRV++ G   +                   + V G
Sbjct: 234 QDGAVVLNADDEYFDYLAARAQ---CRVVAFGISPKAAIRAANIRVDEKGGTLFGLVVPG 290

Query: 298 KDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           K    +      G+  V NAL AA +   +G+    + E L K      R +   + S G
Sbjct: 291 KSRQTEIRIRAQGQHNVSNALAAAAVGYVLGLSGTAIAEGLAKFRPAAMRSQI--SLSHG 348

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDL 409
            ++  D Y     S++  ++ +  +  G+  +     +   G D  +  R +   +A   
Sbjct: 349 VQVINDCYNANPASMKAAVQLLAELGRGKRSIAALGDMLELGTDSKRMHREVGAFLAAQG 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQDVL 462
               +      R         E+  G        +RI        A      M+ + DV+
Sbjct: 409 IGHLLACGVLGR---------ELAEGARQAGMASDRITELPDAPAAAAALARMVRQGDVV 459

Query: 463 VV-AGKGHETVHIVT 476
           +V A +G     +V 
Sbjct: 460 LVKASRGMRMEQVVE 474


>gi|161508038|ref|YP_001578005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260103045|ref|ZP_05753282.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|160349027|gb|ABX27701.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083135|gb|EEW67255.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|323467273|gb|ADX70960.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
 gi|323467316|gb|ADX71003.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
          Length = 523

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 115/497 (23%), Positives = 199/497 (40%), Gaps = 49/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           VS DSR IQ   +F    G        ++  A   GA   V    Y              
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKDNGAICYVAEQPYPE-------GKGMH 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V +  K ++L ++  +    +++  +A TGT GK++ A F++ +  ++  G ++   
Sbjct: 84  ALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALIS 143

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                I    +D+     TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVNDVIGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H     Y + K+    +LL      II A+ A+  EV   A  
Sbjct: 204 DLGFFLNISPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETAHFNEVYAAATT 259

Query: 263 AGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLF 304
                 +     +       KV          + ++   F                D+  
Sbjct: 260 TTNPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTL 319

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G++     + +  +  +PGR +   T + G  + VDYAH
Sbjct: 320 KMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKNHG-MVVVDYAH 377

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  ++    + +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 378 NKASMMALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFE 437

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  EI  GI         + +R +AI  AI M    DV+++ GKG +    +    
Sbjct: 438 DPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGADAFQKIRGVN 497

Query: 480 KKMSVDCDIIREILGLI 496
                D  + +E++  +
Sbjct: 498 TPYPSDIVVAQEVINEL 514


>gi|152993861|ref|YP_001359582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
 gi|151425722|dbj|BAF73225.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
          Length = 432

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 107/393 (27%), Positives = 175/393 (44%), Gaps = 23/393 (5%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTP 165
             +G     ++ VTGT+GK++V + +              G     +   +  +  +TTP
Sbjct: 53  AFWGLDAMKVVGVTGTNGKTTVTAAIYSFLLDLDKKPALQGTRGLFAEEKRIEEKSMTTP 112

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S +     +      G  +  +E SSH +DQ R++GI       TN+  DH+DYH T + 
Sbjct: 113 SILETLHNMKQTMDMGCNYFIMEVSSHAIDQKRIEGITFALKVHTNVTSDHLDYHGTVEE 172

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y   K   F +    ++  ++  DD      +           S G      +  +  ++
Sbjct: 173 YRRVKSLFFAD----DTMKLLNKDD------INNITYNPKNAYSYGVDEPATYKVQAFSL 222

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPG 344
            +     I    ++  F  P+ G F ++N + A G    +       + + +E    V G
Sbjct: 223 LHGITAGIKYMQEEATFHSPMMGLFNLFNLMAAIGSVHLLTKRPIQEICDVVENFAGVAG 282

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V   SR   + VD+AHT + +  +L+   ++    I VVFG GG+RD+ KRP+MG 
Sbjct: 283 RMEVV---SRDPLVIVDFAHTHDGIHAVLE---SMKDRDISVVFGAGGNRDKEKRPLMGA 336

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            A   A+   VT DNPR E PE I  +I   +HG        +R  AI+ A+E L   +V
Sbjct: 337 AAGRYANKIYVTSDNPRDEVPEMILEDILVGLHGKENVTATPDRRLAIKMALEALEPNEV 396

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           L++ GKG E    +  G K    D +++RE+L 
Sbjct: 397 LLILGKGDEDYQEIK-GVKHHFDDREVVRELLA 428


>gi|289566694|ref|ZP_06447110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
 gi|289161511|gb|EFD09395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
          Length = 485

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 119/465 (25%), Positives = 190/465 (40%), Gaps = 35/465 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              +     T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+ L  G F N+  DHI    H T   YF  K     +L+      ++  +  Y   + +
Sbjct: 202 GLTLDVGIFLNISPDHISPIEHPTFDDYFYCK----RQLILNSKTVVLNHESDYFDLLRE 257

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVY 313
            A       ++ G   +  + + + +       T+S                L G F   
Sbjct: 258 TADLFQIPTITYGRSEESNY-QVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQE 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S    + L++  V     + + +N  G  +YVDYAH   SL+ +L
Sbjct: 317 NAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN--GAHVYVDYAHNYLSLKTLL 374

Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI
Sbjct: 375 EFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEI 434

Query: 433 IHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
              I         + +R EAIR A+     QD +V+AGKG +   
Sbjct: 435 NEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQ 479


>gi|268320124|ref|YP_003293780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
 gi|262398499|emb|CAX67513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
          Length = 523

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 195/497 (39%), Gaps = 49/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFR---PTYLSMAKDSGATCYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR--SGLSSFQI 147
            LVV +  K ++L ++  Y    +++  +A TGT GK++ A F++ +  +   G ++   
Sbjct: 87  ALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFS 146

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H     Y + K+    +L+      II A   +  E+   A  
Sbjct: 207 DLGFFLNITPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAMSDHFDEIYAAATT 262

Query: 263 AGCRVLSVGY-----------QGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLF 304
                    +           Q      + V     + +  +              D+  
Sbjct: 263 TTNPDSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTL 322

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G +     + +  +  +PGR E + + + G  + VDYAH
Sbjct: 323 QMIGDFNEMNGTAAIIGAGLAGENYEECAKGIRHVT-IPGRMEALPSKNHG-TVIVDYAH 380

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + R   + +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 381 NKASMMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFE 440

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP  I  EI  GI         + +R +AI  AI M +K D++++ GKG +    +   +
Sbjct: 441 DPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGADPYQKIRGVD 500

Query: 480 KKMSVDCDIIREILGLI 496
                D  +   ++  +
Sbjct: 501 TPYPTDIKVAESVINEL 517


>gi|42519760|ref|NP_965690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41584050|gb|AAS09656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus johnsonii NCC 533]
 gi|329668011|gb|AEB93959.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 523

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 195/497 (39%), Gaps = 49/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFR---PTYLSMAKDSGATCYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR--SGLSSFQI 147
            LVV +  K ++L ++  Y    +++  +A TGT GK++ A F++ +  +   G ++   
Sbjct: 87  ALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFS 146

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H     Y + K+    +L+      II A   +  E+   A  
Sbjct: 207 DLGFFLNITPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAMSDHFDEIYAAATT 262

Query: 263 AGCRVLSVGY-----------QGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLF 304
                    +           Q      + V     + +  +              D+  
Sbjct: 263 TTNPDSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTL 322

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G +     + +  +  +PGR E + + + G  + VDYAH
Sbjct: 323 QMIGDFNEMNGTAAIIGAGLAGENYEECAKGIRHVT-IPGRMEALPSKNHG-TVIVDYAH 380

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + R   + +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 381 NKASMMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFE 440

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP  I  EI  GI         + +R +AI  AI M +K D++++ GKG +    +   +
Sbjct: 441 DPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGADPYQKIRGVD 500

Query: 480 KKMSVDCDIIREILGLI 496
                D  +   ++  +
Sbjct: 501 TPYPTDIKVAESVINEL 517


>gi|257785019|ref|YP_003180236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
 gi|257473526|gb|ACV51645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
          Length = 517

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 118/503 (23%), Positives = 203/503 (40%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L +L+     + I    + F    +  ++ +V+SDSR +  G +FV   G       +
Sbjct: 1   MTLHELLALFTSKNIEYTTAHFDAVDQNAQLTDVASDSREVIPGSLFVC-KGASF-SPAY 58

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  A+  GA A +   + + +     +  N   + VD+ R  ++  A+ + G   + +  
Sbjct: 59  LTSAVKAGAVAYLCQRSLAEE--LQAVAPNVAAIHVDDVRFAMAYVAAGVAGHPDKKLTT 116

Query: 118 LAVTGTSGKSSVASFVQQICQ--RSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKAL 174
           + +TGT GKS+ +  ++ I            IG          Q    TTP    L + L
Sbjct: 117 IGITGTKGKSTCSYMLRAILDGDEPYSKCGVIGGIEVFDGKDTQPAHNTTPEAPELWRHL 176

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMR 232
            + +  G+ +V +E SS GL   R   + L    F N+G DHI    H T + YF +K++
Sbjct: 177 KHAAEAGLPYVDMEISSQGLKYDRTVDLNLSVAVFLNIGTDHISPVEHPTFEDYFESKLK 236

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +F+        A++  +     +VM+RA     +VL+         +       ++  VT
Sbjct: 237 IFD----LARVAVVNKNTMMFDQVMERAQRCE-KVLTFSTTDSDATVWADEITPHQGMVT 291

Query: 293 ISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +V    +     LP    F V NAL A  +   +GI     +  L  +  VPGR E + 
Sbjct: 292 FTVHTPTWTSSAALPMSGLFNVENALAAITVADYLGIREKDAVLPLMNVK-VPGRMELLS 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +        VDYAH   S + +     +        VV G  G +   +R  + + A   
Sbjct: 351 SPDNKVTGLVDYAHNKLSYQKLFSSTAKEFPGYGRYVVMGAVGGKAYNRRQELPEEAAKW 410

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQD----VL 462
           AD+ I T ++   EDP  I A++    P         +R +AI  A+      D    ++
Sbjct: 411 ADLMIYTTEDCNMEDPAVICAQMAEATPEGAAHKIILDRYDAIYEAVSAAY-DDPRPSLV 469

Query: 463 VVAGKGHETVHIVTNGEKKMSVD 485
            +  KG E  +I+         D
Sbjct: 470 YLLAKGDEPFNIIGGKHVPWMTD 492


>gi|238854409|ref|ZP_04644751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|260665100|ref|ZP_05865950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931813|ref|ZP_06337298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|313473004|ref|ZP_07813491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|238833031|gb|EEQ25326.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|239528789|gb|EEQ67790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|260561154|gb|EEX27128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304120|gb|EFA96237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
          Length = 516

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 123/494 (24%), Positives = 200/494 (40%), Gaps = 49/494 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR IQ   +F    G        ++  A   GA   V    +              
Sbjct: 34  ISYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKDNGATCYVAEQPFPE-------GKGMH 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            LVV +  K ++L ++  Y    +++  +A TGT GK++ A F++ I  +   G ++   
Sbjct: 84  ALVVRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFS 143

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H     Y + K+    +LL      II A+  +  EV   A  
Sbjct: 204 DLGFFLNITPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETDHFSEVYAAATT 259

Query: 263 AGCR--VLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK---------------DFDFLF 304
                 +     QG +   LK       K + T  +E K               + ++  
Sbjct: 260 TTNPDSIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTL 319

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G +     E +  +  +PGR E   T + G  + VDYAH
Sbjct: 320 DMIGDFNEINGTAAIIGAGLGGANHDHAAEGIRHVT-IPGRMETEKTKNHG-LVVVDYAH 377

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  ++   ++ +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 378 NKASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVFADKAFLTTDDPGFE 437

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP  I  EI  GI         + +R +AIR AI M  K DV+++ GKG +    V    
Sbjct: 438 DPMDIAEEINAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICGKGADPFQKVRGIN 497

Query: 480 KKMSVDCDIIREIL 493
                D  + R ++
Sbjct: 498 TPYPSDIVVARNVI 511


>gi|304384559|ref|ZP_07366905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328753|gb|EFL95973.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 507

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 126/492 (25%), Positives = 210/492 (42%), Gaps = 49/492 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + ++ DSR ++ G +F    G+ E    ++  A   GA   V    Y          +  
Sbjct: 30  SGITYDSRKVRPGDMFFC-KGSFEPA--YLKAAREAGATTYVAEREYPE-------GTGM 79

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++V N  + +++ ++  Y + P+N   I+ +TGT GK+S A F   I  +      Q+
Sbjct: 80  TAIIVTNVTRAMAVLSATYY-EFPQNDLFIIGITGTKGKTSSAYFAHAILNQ--QYPQQV 136

Query: 148 GPTSTISSFAQDNRLTT-------PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              STI                  P  + L   +      G+ ++ +E SS    + R+ 
Sbjct: 137 ALFSTIDRIVGPRPEDQFKSDLTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVY 196

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-- 256
           G+K   G F N+  DHI    H+  + Y + K+    +L+      II AD    ++V  
Sbjct: 197 GLKYDCGIFLNITPDHIGRNEHKDFEDYLHCKL----QLMVNSKRCIIDADTNRFEDVYG 252

Query: 257 MKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLFP 305
             RA     ++          G    +K         + TI+             ++   
Sbjct: 253 AARATTDPKQIYLFSADPANGGVDYTIKNAEDDLINNRFTIAATSSTKPALAITGEYDLN 312

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G++   NA  A       G D    L+ L ++ V+PGR E++     G  ++VDYAH 
Sbjct: 313 VAGDYNQSNATAAIIAAALAGADRDAALKPLSEI-VIPGRMEYLAIPGHG-VVFVDYAHN 370

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             SL  +LK ++     G+ IVV G  GD+   +R   GK   + AD+A +T D+P  ED
Sbjct: 371 YASLRALLKFVKHQYHDGKAIVVVGSPGDKGISRRAGFGKALSEQADVAYLTTDDPGFED 430

Query: 425 PEKIRAEIIHGI-PGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P+ I A+I+  I PG +E     +R EAIR AI      D++V+AGKG +    V   + 
Sbjct: 431 PQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAIVESGPHDIVVLAGKGEDPYQKVRGVDT 490

Query: 481 KMSVDCDIIREI 492
               D  + +E+
Sbjct: 491 PWPTDMGVAQEV 502


>gi|116332750|ref|YP_794277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis ATCC 367]
 gi|116098097|gb|ABJ63246.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus brevis ATCC
           367]
          Length = 504

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 125/519 (24%), Positives = 195/519 (37%), Gaps = 48/519 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK   LI     +  + L    +Q  +     ++ DSR +QA  +FV   G       ++
Sbjct: 1   MKANQLIA--LLQEHDLLRNTTLQVDDTDFVGLTYDSRQVQANTLFVC-KGFNF-SVDYL 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +    Y +         + P+++V N RK LS  A++LY   P+N L V
Sbjct: 57  HSAIENGATAYLAEEDYGV---------SVPVILVKNVRKALS-LAAQLYFDFPQNDLFV 106

Query: 121 TG---TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-------SPIYL 170
            G   T GK++       I   +     Q+   STI+                      L
Sbjct: 107 IGYTGTKGKTTSTYLTTNILSHA--FPQQVAMFSTINHIVGPKPQDQYRAHLTTAESFDL 164

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228
            K +      G   + +E +S      R+ G+    G F N+  DHI    H     Y  
Sbjct: 165 FKEMRQAVDNGQKVLVMEVASQAYLLDRVYGLTFDVGIFLNISPDHIGVNEHPNFANYLF 224

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----NAGCRVLSVGYQGKFIHLKKVCA 284
            KM    +LL      II A+  +  E+   A                    + +    A
Sbjct: 225 CKM----QLLLNSRNCIINAETDHFDEIYAAAKVSTDPEHIFTYGFNQAQASLSITSRQA 280

Query: 285 IHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   ++V  +        +   +PG+F   N+  A       G   A +   L   
Sbjct: 281 TLTDSHFDLTVHDERLAALATTYDVSVPGDFNQSNSAAAILASHLAGAQVADMQYGLAH- 339

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGK 398
             +PGR E + T   G  +Y+DYAH   S+  +L  + T     R+I V G  GD+ + +
Sbjct: 340 TRIPGRMESITTKHHG-TVYIDYAHDWGSMNALLSFLHTQFPDHRVIAVLGSTGDKGEDR 398

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIE 454
           R    K   D AD A +T D+P  EDP  I  EI   I            R  AI  AI 
Sbjct: 399 REGFAKALNDYADAAYLTTDDPGHEDPMAIAREIDSHIDHTKVKTTIIAQRETAIAQAIT 458

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                D++V+AGKG +    +   +   + D  + ++++
Sbjct: 459 TATNTDLVVLAGKGEDAYQKINGVDTPYASDPVVAQDVI 497


>gi|58698810|ref|ZP_00373688.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534668|gb|EAL58789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 410

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 144/434 (33%), Positives = 232/434 (53%), Gaps = 31/434 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L++          +I  + + + +I  V+ + + I+ G++FV +   + D  ++I
Sbjct: 1   MKLRELLH----------NIIDVNF-DIEIKGVTCNPKKIKEGYLFVCVS-ER-D-RIYI 46

Query: 61  PQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENI 117
            Q ++ GA+AI+ S     +L       R     +   N ++  S   SR Y  K P+ +
Sbjct: 47  DQILSCGAKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYV 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AVTGT+GK+SV  F +QI Q SG ++  IG   T  +  +     + +        + L
Sbjct: 107 AAVTGTNGKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V H+ +E+SSHG+DQ+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF E+
Sbjct: 167 RGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEV 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP+   AI+ AD      ++K A     +V++ G +G  I L +  +  N Q +T+ ++ 
Sbjct: 227 LPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDN 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + ++  FP+ G+FQ YN L A G+    G++   +   +EKL   PGR E V        
Sbjct: 287 QIYNTFFPVLGKFQAYNLLCAIGIS---GLNYREIC--VEKLVSPPGRMEKVK-----PF 336

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +VDYAHT ++L+  L +++   + +II+VFGCGG+RDQ KR  MGKIA   AD  I+T 
Sbjct: 337 AFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITQ 396

Query: 418 DN----PRSEDPEK 427
            N    PR   P  
Sbjct: 397 ANSKKSPRIISPAA 410


>gi|116630287|ref|YP_815507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|282852925|ref|ZP_06262266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
 gi|116095869|gb|ABJ61021.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus gasseri ATCC
           33323]
 gi|282556033|gb|EFB61654.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
          Length = 523

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/502 (22%), Positives = 199/502 (39%), Gaps = 49/502 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            K+N +S DSR I+   +F     G +     ++  A   GA   V    Y         
Sbjct: 32  TKMNYISYDSRDIKTNTLFFCKGKGFR---PTYLSMAKDSGATCYVAEQPYPE------- 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR--SGL 142
                 LVV +  K ++L ++  Y    +++  +A TGT GK++ A F++ +  +   G 
Sbjct: 82  GKGMHALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGR 141

Query: 143 SSFQIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           ++        +    +D      TTP  + L + +      G+TH+ +E SS    ++R+
Sbjct: 142 TALFSSVDDIVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRV 201

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            G+    G F N+  DHI    H     Y + K+    +L+      II A   +  E+ 
Sbjct: 202 FGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAMSDHFDEIY 257

Query: 258 KRAHNAGCRVLSVGY-----------QGKFIHLKKVCAIHNKQQVTISVEGKD------- 299
             A           +           Q      + V     + +  +    +        
Sbjct: 258 AAATTTTNPDSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASEKAKKLPIA 317

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D+   + G+F   N   A       G   A   + +  +  +PGR E + + + G  + 
Sbjct: 318 GDYTLQMIGDFNEMNGTAAIIGAGLAGESYAECAKGIRHVT-IPGRMETLPSKNHG-TVI 375

Query: 360 VDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   S+  ++  + R   + +IIVV G  GD+   +RP   +     A+ A +T D
Sbjct: 376 VDYAHNKASMIALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYANKAFLTTD 435

Query: 419 NPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +P  EDP  I  EI  GI         + +R +AI  AI M NK D++++ GKG +    
Sbjct: 436 DPGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLICGKGADPFQK 495

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           +   +     D  +   ++  +
Sbjct: 496 IRGVDTPYPTDIKVAESVINEL 517


>gi|227889301|ref|ZP_04007106.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850103|gb|EEJ60189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 509

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 195/497 (39%), Gaps = 49/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 23  ISYDSRDIKTNTLFFCKGKGFR---PTYLSMAKDSGATCYVAEQPYPE-------GKGMH 72

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR--SGLSSFQI 147
            LVV +  K ++L ++  Y    +++  +A TGT GK++ A F++ +  +   G ++   
Sbjct: 73  ALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFS 132

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D      TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 133 SVDDIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 192

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H     Y + K+    +L+      II A   +  E+   A  
Sbjct: 193 DLGFFLNITPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAMSDHFDEIYAAATT 248

Query: 263 AGCRVLSVGY-----------QGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLF 304
                    +           Q      + V     + +  +              D+  
Sbjct: 249 TTNPDSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTL 308

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G +     + +  +  +PGR E + + + G  + VDYAH
Sbjct: 309 QMIGDFNEMNGTAAIIGAGLAGENYEECAKGIRHVT-IPGRMEALPSKNHG-TVIVDYAH 366

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + R   + +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 367 NKASMMALMSFMQREFNTPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFE 426

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP  I  EI  GI         + +R +AI  AI M +K D++++ GKG +    +   +
Sbjct: 427 DPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGADPYQKIRGVD 486

Query: 480 KKMSVDCDIIREILGLI 496
                D  +   ++  +
Sbjct: 487 TPYPTDIKVAESVINEL 503


>gi|238853708|ref|ZP_04644075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300362910|ref|ZP_07059080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
 gi|238833644|gb|EEQ25914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300352960|gb|EFJ68838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
          Length = 523

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/502 (22%), Positives = 199/502 (39%), Gaps = 49/502 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            K+N +S DSR I+   +F     G +     ++  A   GA   V    Y         
Sbjct: 32  TKMNYISYDSRDIKTNTLFFCKGKGFR---PTYLSMAKDSGATCYVAEQPYPE------- 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR--SGL 142
                 LVV +  K ++L ++  Y    +++  +A TGT GK++ A F++ +  +   G 
Sbjct: 82  GKGMHALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGR 141

Query: 143 SSFQIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           ++        +    +D      TTP  + L + +      G+TH+ +E SS    ++R+
Sbjct: 142 TALFSSVDDIVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRV 201

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            G+    G F N+  DHI    H     Y + K+    +L+      II A   +  E+ 
Sbjct: 202 FGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAMSDHFDEIY 257

Query: 258 KRAHNAGCRVLSVGY-----------QGKFIHLKKVCAIHNKQQVTISVEGKD------- 299
             A           +           Q      + V     + +  +    +        
Sbjct: 258 AAATTTTNPDSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASEKAKKLPIA 317

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D+   + G+F   N   A       G   A   + +  +  +PGR E + + + G  + 
Sbjct: 318 GDYTLQMIGDFNEMNGTAAIIGAGLAGESYAECAKGIRHVT-IPGRMETLPSKNHG-TVI 375

Query: 360 VDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   S+  ++  + R   + +IIVV G  GD+   +RP   +     A+ A +T D
Sbjct: 376 VDYAHNKASMIALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYANKAFLTTD 435

Query: 419 NPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +P  EDP  I  EI  GI         + +R +AI  AI M NK D++++ GKG +    
Sbjct: 436 DPGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLICGKGADPFQK 495

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           +   +     D  +   ++  +
Sbjct: 496 IRGVDTPYPTDIKVAESVINEL 517


>gi|319949411|ref|ZP_08023474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
 gi|319436923|gb|EFV91980.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
          Length = 436

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 131/438 (29%), Positives = 208/438 (47%), Gaps = 14/438 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +   + +    +      +  +   +  ++    G +F A+ G +  G  F   A+  
Sbjct: 3   TARQLADAVGARLLGDRSGADVDLIGATIRAQDCGPGILFAALPGTRVHGASFGATAVEA 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++        +  A +    P+LV    R  L   ++ + G    ++  + +TGTS
Sbjct: 63  GASAVLTDPEG--IELMAAVAGRLPVLVHPAPRAVLGAVSAAVTGDPSADLDVVGITGTS 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   +  G  +  IG T + +   A  +RLTTP        L+ + + G  
Sbjct: 121 GKTTTTYLVEAALEGCGHVAGLIGTTGSRVDGRALPSRLTTPEAPEFQALLARMRAAGAR 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE------EL 237
            V+ E SSH L   R+DG++   G+F NL +DH+D+H +   YF AK RLF+        
Sbjct: 181 AVAAEVSSHALRLGRVDGVRFAVGAFLNLSQDHLDFHPSMDDYFRAKARLFDVEADPGSA 240

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VE 296
           +     A++  DD + + ++    +A            +   +      + Q+ T+    
Sbjct: 241 VWPAERAVVVIDDEWGRRLVGMRPDAVTVSAEPDADADWTAGESTPTDRDTQEFTVRGPR 300

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G   D   PL G F V NALVA  +  A+G D A     L ++  VPGR E V    +  
Sbjct: 301 GLTVDVELPLMGRFNVANALVALAIVDALGGDVAAAAAGLMRVR-VPGRLEPV-VRGQDF 358

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           R+ VDYAH   ++  +L+++R  T GR+ VV G GGDRD GKRP MG  A ++AD+ +VT
Sbjct: 359 RVLVDYAHKPGAVAAVLRSVRAQTEGRVAVVLGAGGDRDPGKRPKMGAAAAEIADLVVVT 418

Query: 417 DDNPRSEDPEKIRAEIIH 434
           DDNPRSEDP  IRA +  
Sbjct: 419 DDNPRSEDPAAIRAAVRA 436


>gi|227879194|ref|ZP_03997066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844018|ref|ZP_05549505.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256849418|ref|ZP_05554850.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|262046085|ref|ZP_06019048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|293380702|ref|ZP_06626751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|312976906|ref|ZP_07788655.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
 gi|227861197|gb|EEJ68844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613923|gb|EEU19125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256713534|gb|EEU28523.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|260573415|gb|EEX29972.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|290922742|gb|EFD99695.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|310896234|gb|EFQ45299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
          Length = 523

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 118/502 (23%), Positives = 201/502 (40%), Gaps = 59/502 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           VS DSR IQ   +F    G        ++  A   GA   V    Y              
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKDNGAICYVAEQPYPE-------GKGMH 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V +  K ++L ++  +    +++  +A TGT GK++ A F++ +  ++  G ++   
Sbjct: 84  ALIVRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALIS 143

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D+     TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260
             G F N+  DHI    H     Y + K+    +LL      II A+ A+  EV   A  
Sbjct: 204 DLGFFLNISPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETAHFDEVYAAATT 259

Query: 261 ---------------------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                                     R  S     K      VCA    +++ I     +
Sbjct: 260 TTNPDSIYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPI-----N 314

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D+   + G+F   N   A       G++     + +  +  +PGR +   T   G  + 
Sbjct: 315 GDYTLKMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKKHG-MVV 372

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   S+  +++ +R      +IIVV G  GD+   +RP   +     AD A +T D
Sbjct: 373 VDYAHNKASMMALMRFMRNEFNDPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTD 432

Query: 419 NPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +P  EDP+ I  EI  GI         + +R +AI  AI M    DV+++ GKG +    
Sbjct: 433 DPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMATPDDVVLICGKGADAFQK 492

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           +         D  + ++++  +
Sbjct: 493 IRGVNTPYPSDIVVAQQVINEL 514


>gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 461

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 105/453 (23%), Positives = 176/453 (38%), Gaps = 28/453 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  VS+DSR ++ G +FV +VG K DGH FI  A   GA A + +     +D    +  
Sbjct: 24  EVLGVSTDSRSLKHGDLFVPLVGAKFDGHDFIKNAFEAGASATLCAED--KRDRVLNLTL 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++ VD+T+  L   A           +A+TG+ GK++    +  +  R      +  
Sbjct: 82  EKPVIFVDDTQNALLRLAGFYRSFFSIPFVAITGSVGKTTTKEMIAAVLTR------RYR 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 +F         + I L   L  L    V  V +  S  G        +K     
Sbjct: 136 VLKNEGNF--------NNEIGLPLTLFRLEDHQVGVVEMGMSGFGEISRLSAIVKPHVAV 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI+   +++    AK+ + E L  K+   ++ AD     E+  +      R +
Sbjct: 188 ITNIGVSHIEKLGSRENIARAKLEIIEPL-SKDDLVVLNADSP---ELYAKRGTLTPRTV 243

Query: 269 SVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G +   I    + ++  +     ++ +  +F    PL G   VYNAL A  + +  G+
Sbjct: 244 YFGIEKGDIRATDIVSMGRDGVIFKVTGDIPEFSVEIPLAGTHNVYNALAAIAVGLEFGL 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +   L +L     R EF  T      I   Y  + +S++  L  +R +  GR  V 
Sbjct: 304 SIDEIRRGLMELKPTKMRLEFKKTPFGAVVIDDCYNASPDSMKAALNVLRELGEGRRKVA 363

Query: 388 FGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
                    D        +G+ A    DI I   ++   ED  K   E   G        
Sbjct: 364 ILGDMLELGDYAVKAHEEIGRYAAGKTDILICIGNHA--EDLAKGATEAGLGPRFIHTFS 421

Query: 444 NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
              EAI    E++   D+++V A +G +   IV
Sbjct: 422 TNKEAIDRLGELVEDCDIILVKASRGMKLEEIV 454


>gi|315039137|ref|YP_004032705.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325957608|ref|YP_004293020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|312277270|gb|ADQ59910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325334173|gb|ADZ08081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|327184253|gb|AEA32700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 523

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 109/497 (21%), Positives = 196/497 (39%), Gaps = 49/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           VS DSR IQ   +F    G        ++  A   GA   V    Y              
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKDNGAICYVAEQPYPE-------GKGMH 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V +  K ++L ++  +    +++  +A TGT GK++ A F++ +  ++  G ++   
Sbjct: 84  ALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALIS 143

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D+     TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H     Y + K+    +L+      II A+ A+  E+   A  
Sbjct: 204 DLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETAHFDEIYAAATT 259

Query: 263 AGCRVLSVGYQGK-----------FIHLKKVCAIHNKQQVTISVEGK-------DFDFLF 304
                    +  +                       + +  +            + D+  
Sbjct: 260 TTNPDSIYLFARENFENPDLKVPIDFRFASQELDMKETRFKLYCASDKAKKLPINGDYTL 319

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G++     + +  +  +PGR +   T S G  + VDYAH
Sbjct: 320 KMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKSHG-MVVVDYAH 377

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  ++    + +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 378 NKASMMALMSFMQNEFDNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFE 437

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  EI  GI         + +R +AI  AI M    DV+++ GKG +    +    
Sbjct: 438 DPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGADAFQKIRGVN 497

Query: 480 KKMSVDCDIIREILGLI 496
                D  + + ++  +
Sbjct: 498 TPYPSDIVVAQNVINEL 514


>gi|313683411|ref|YP_004061149.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156271|gb|ADR34949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 431

 Score =  253 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 180/386 (46%), Gaps = 26/386 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL--AKA 173
            ++ +TGT+GK++ AS +  +    G  +   G      + A     T  +P  L   + 
Sbjct: 63  RVIGITGTNGKTTTASAIYSLLLDLGHKAAMQGTRGFFMNDAPVEGKTLTTPTVLNTYRH 122

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++   + G  +  +E SSH ++Q R+ GI       TN+ +DH+DYH++ + Y   K   
Sbjct: 123 MAQAIASGCEYFVMEVSSHAIEQERIAGITFALKILTNITQDHLDYHESIEEYTRIKNLF 182

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F++    ES  +I  D+  ++   K A        + G +    +     +++N     +
Sbjct: 183 FQD----ESKKLINKDEGKAEFNFKNA-------FTYGVENPATYKIIAYSLNNGVSGVL 231

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   F+  L G F +YN   A      +       + + +E    V GR E V  +
Sbjct: 232 KYFEDHVPFVSSLHGFFNLYNITAAMAAVHLVTDESLEKIADVVENFGGVSGRMEVVSES 291

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VD+AHT + +E +L  ++      ++VVFG GGDRD+ KRP+MGK+A+  A  
Sbjct: 292 ---PLVIVDFAHTPDGMEQVLNALKE---KEVLVVFGAGGDRDRKKRPLMGKVAVAYAKK 345

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468
             VT DNPR EDP+ I  +I+ GI      +   NR  AI  A++     D V+++ GKG
Sbjct: 346 VYVTSDNPRFEDPDAIIEDILAGIEDKSNVVVDVNRRSAIAQALKE-RSGDEVVLILGKG 404

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            ET  I+ + +     D  + +E+L 
Sbjct: 405 DETSQIIYD-QHLPFDDRVVAKELLA 429


>gi|330895233|gb|EGH27571.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 297

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 96/295 (32%), Positives = 143/295 (48%), Gaps = 7/295 (2%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TNL RDH+DYH T +AY  AK +LF    P     +I  DD + +E+      +
Sbjct: 1   FDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPDLKCRVINLDDDFGRELAAVKQES 58

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                S      +++ +      +  + T+     +      L G F + N L A G  +
Sbjct: 59  RLITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALL 118

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +L+ +R    GR
Sbjct: 119 GLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKGR 177

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441
           ++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I  G     +  
Sbjct: 178 LLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDIRPGFVAADKVR 237

Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
               R +AI   I   N  DV+V+AGKGHE    + NG+++   D       L +
Sbjct: 238 FIEGRGQAIAELIASANANDVVVLAGKGHEDYQEI-NGQRQPFSDLQEAASALAV 291


>gi|116493794|ref|YP_805528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei ATCC 334]
 gi|122264751|sp|Q03CI6|MURE_LACC3 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116103944|gb|ABJ69086.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei ATCC
           334]
          Length = 517

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 113/504 (22%), Positives = 198/504 (39%), Gaps = 51/504 (10%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    +++  +A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSS-FQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +            T+     D R      TP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             ++R+ G+    G F N+  DHI    H T   Y + K+    +LL      +I A+  
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETE 248

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----------CAIHNKQQVTISVEGKD- 299
           +  +V   A           +       K+             A   + + T+    +  
Sbjct: 249 HFDQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKA 308

Query: 300 ------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   +   L G+F   NA  A       G+D++  +  + K+  +PGR E      
Sbjct: 309 AALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVK-IPGRMEHTKVAG 367

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  
Sbjct: 368 HGA-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATE 426

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A +T D+P  EDP  I  EI   I        +  +R +AI  AI      D++VVAGKG
Sbjct: 427 AFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRKKAIAEAISDSGPNDIVVVAGKG 486

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
            +    V         D  +++++
Sbjct: 487 ADPYQKVRGVNTPWPTDMAVVKQV 510


>gi|270291605|ref|ZP_06197825.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
 gi|270279924|gb|EFA25762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
          Length = 507

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 125/492 (25%), Positives = 207/492 (42%), Gaps = 49/492 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + ++ DSR ++ G +F    GN E    ++  A   GA   V    Y          +  
Sbjct: 30  SGITYDSRKVRPGDMFFC-KGNFEPA--YLKAAREAGATTYVAEREYPE-------GTGM 79

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++V N  + +++ ++  Y + P+N   I+ +TGT GK+S A F   I  +      Q+
Sbjct: 80  TAIIVTNVTRAMAVLSATYY-EFPQNDLFIIGITGTKGKTSSAYFAHAILNQ--QYPQQV 136

Query: 148 GPTSTISSFAQDNRLTT-------PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              STI                  P  + L   +      G+ ++ +E SS    + R+ 
Sbjct: 137 ALFSTIDRIVGPRPEDQFKSDLTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVY 196

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+K   G F N+  DHI    H+  + Y + K+    +L+      II AD    ++V  
Sbjct: 197 GLKYDCGIFLNITPDHIGRNEHKDFEDYLHCKL----QLMVNSKRCIIDADTNRFEDVYG 252

Query: 259 RAHNAGCRVLSVGYQGK------FIHLKKVCAIHNKQQVTISVEGKD-------FDFLFP 305
            A           +            +K         + TI+             ++   
Sbjct: 253 AAKATTDPKQIYLFSADPANGGVDYTIKNAEDDLINNRFTIAAISSTKPALAITGEYDLN 312

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G++   NA  A       G D    L+ L ++ V+PGR E++     G  ++VDYAH 
Sbjct: 313 VAGDYNQSNATAAIIAAALAGADRDAALKPLNEI-VIPGRMEYLAIPGHG-VVFVDYAHN 370

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             SL  +LK ++     G+ IVV G  GD+   +R   GK   + AD+A +T D+P  ED
Sbjct: 371 YASLRALLKFVKHQYHDGKAIVVVGSPGDKGISRRAGFGKALSEQADVAYLTTDDPGFED 430

Query: 425 PEKIRAEIIHGI-PGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P+ I A+I+  I PG +E     +R EAIR AI      D++V+AGKG +    V   + 
Sbjct: 431 PQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAIVESGPHDIVVLAGKGEDPYQKVRGVDT 490

Query: 481 KMSVDCDIIREI 492
               D  + +E+
Sbjct: 491 PWPTDMGVAQEV 502


>gi|227894010|ref|ZP_04011815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864211|gb|EEJ71632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 523

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 113/497 (22%), Positives = 202/497 (40%), Gaps = 49/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           VS DSR IQ   +F    G        ++  A   GA   V    Y              
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKDNGAICYVAEQPYPE-------GKGMH 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V +  K ++L ++  +    +++  +A TGT GK++ A F++ +  ++  G ++   
Sbjct: 84  ALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALIS 143

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D+     TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260
             G F N+  DHI    H     Y + K+    +L+      II A+ A+  E+   A  
Sbjct: 204 DLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETAHFNEIYAAATT 259

Query: 261 ---------------HNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                           N   +V +   +  + + +K+                 + D+  
Sbjct: 260 TTNPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLYCASDKARKLDINGDYTL 319

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G++     + +  +  +PGR +   T S G  + VDYAH
Sbjct: 320 KMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKSHG-MVVVDYAH 377

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  ++      +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 378 NKASMMALMSFMQNEFNDPKIIVVVGAPGDKGISRRPGFSESLTAYADKAFLTTDDPGFE 437

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  EI  GI         + +R +AI  AI M   +DV+++ GKG +    V    
Sbjct: 438 DPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPKDVVLICGKGADAFQKVRGVN 497

Query: 480 KKMSVDCDIIREILGLI 496
                D  + ++++  +
Sbjct: 498 TPYPSDIVVAQKVINEL 514


>gi|239631049|ref|ZP_04674080.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527332|gb|EEQ66333.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 517

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 113/504 (22%), Positives = 198/504 (39%), Gaps = 51/504 (10%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    +++  +A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSS-FQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +            T+     D R      TP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             ++R+ G+    G F N+  DHI    H T   Y + K+    +LL      +I A+  
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETE 248

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----------CAIHNKQQVTISVEGKD- 299
           +  +V   A           +       K+             A   + + T+    +  
Sbjct: 249 HFDQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKA 308

Query: 300 ------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   +   L G+F   NA  A       G+D++  +  + K+  +PGR E      
Sbjct: 309 AALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVK-IPGRMEHTKVAG 367

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  
Sbjct: 368 HGA-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATE 426

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A +T D+P  EDP  I  EI   I        +  +R +AI  AI      D++VVAGKG
Sbjct: 427 AFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKG 486

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
            +    V         D  +++++
Sbjct: 487 ADPYQKVRGVNTPWPTDMAVVKQV 510


>gi|207092786|ref|ZP_03240573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 447

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/412 (26%), Positives = 191/412 (46%), Gaps = 28/412 (6%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+ +     L     + Y      I+ +TGT+GK++ AS +  +       +  +G    
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 153 ISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +    ++  LTTP+ + L   L      G  +  +E SSH + Q R+ G+       T
Sbjct: 105 FINDKRIKEKGLTTPTLLELYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILT 164

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAG 264
           N+  DH+D+H++ + Y +AK   F++     +   E+ A+    +A++  + K+AH N  
Sbjct: 165 NITSDHLDFHKSIENYRDAKNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQ 224

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCI 323
              L+        + + +   + K+   I            L G + +YN L    G+ +
Sbjct: 225 AFSLTPSISASLCYQQDLRDPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKL 275

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +    +   LE  + V GR E V +      + VD+AHT++ ++ + +   +  + +
Sbjct: 276 LTQLPLETIAPLLENFYGVKGRLEIVHSK---PLVVVDFAHTTDGMQQVFE---SFKNQK 329

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           I  +FG GGDRD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI      +
Sbjct: 330 ITALFGAGGDRDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINDSSKVV 389

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            + +R +AI  A+E L   +VL++ GKG E   I  +       D +++R+ 
Sbjct: 390 IEKDRKKAILNALENLKDDEVLLILGKGDENTQIFKDKTI-FFSDQEVVRDY 440


>gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
 gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
          Length = 464

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 104/457 (22%), Positives = 178/457 (38%), Gaps = 32/457 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            I  VS+D+R IQ G +FV ++G K DGH FI +AI  GA+A+ V   ++ +   A   +
Sbjct: 25  TIGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGAQAVFVQEGHNTKTIQAF--N 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V +T K L   +       P   + VTG+ GK+S    +  +         +  
Sbjct: 83  DVWLIEVKDTLKALQAISVYYRKLFPIPFIGVTGSVGKTSTKDLISGVLS------GKFN 136

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLDGIKLIAG 207
               + +F         + I L   L  L     ++ + +  SS G  +  +D +    G
Sbjct: 137 VHKNLGNF--------NNEIGLPLTLFNLEENHQISVLEMGMSSFGEIRDLVDMVHPEIG 188

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI++  +++    AKM +      + +  ++  DD Y + + K   +     
Sbjct: 189 VITNIGVSHIEHLGSKEGILKAKMEIASNF-KEGNYLLVNGDDEYLRCIHKDDKDYTVIF 247

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +     F  +            T+ + G+   F     G   VYNAL A  + +   +
Sbjct: 248 YGLSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAAVWIGLKYHM 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +   L+       R E V T  R   I   Y  + +S++  L  +  + S R I V
Sbjct: 308 TFEEIQRGLDGFQPSKMRLE-VITKGRMKIINDAYNASPDSMKAALDVLDHMKSNRKIAV 366

Query: 388 ----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIP--GFI 440
               F  G   ++G R +    A    DI +        E    I  E    GI      
Sbjct: 367 LGNMFEMGSFSEEGHRSVGAYFAKKNIDILVT-----VGEMANWIGLEAKKYGIEENSIR 421

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
              N  EAI    + + ++D ++V G +G     IV 
Sbjct: 422 HVFNNKEAIEMLGQFVQEEDAILVKGSRGMAMEEIVN 458


>gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa Japonica Group]
 gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6
           -diaminopimelate ligase [Oryza sativa Japonica Group]
 gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein,
           expressed [Oryza sativa Japonica Group]
 gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group]
          Length = 757

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 116/516 (22%), Positives = 235/516 (45%), Gaps = 42/516 (8%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+     ++  +  V  D+  + AG ++V + G +  G   + +A  +G
Sbjct: 227 LAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKRG 283

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A A+V      ++   A       +++VD+    L +  + LY +  +++  + V GT G
Sbjct: 284 AVAVVADQTVDIEGTLA----CRALVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDG 339

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            ++ A  V+ + +  G+ +  +G     +   +        +  PI + + ++ +   G 
Sbjct: 340 VTTTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNGA 399

Query: 183 THVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240
               +EA++ G+    +D  I       TN+     +   T + Y N+   LF  ++ P+
Sbjct: 400 EAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDPE 459

Query: 241 ESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               ++  DD  +     +   +      S   +   +H  K      + +V +      
Sbjct: 460 RHRKVVNIDDPSAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGI 519

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G   +YN L +  + +A+G     +++ +E++  +PGR E +      G + 
Sbjct: 520 LEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFG-VI 578

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VD+A T  SL  +L  ++ +   RI+ V GC G+R++GKRP+M K+A + +D+ ++T DN
Sbjct: 579 VDHARTPESLSRLLDGVKELGPRRIVTVIGCCGERERGKRPVMTKVAAEKSDVVMLTSDN 638

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLN 457
           P +EDP  I  +++ G+   +E+               G+RI        A+R A+ M  
Sbjct: 639 PANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLHDIRRVAVRAAVAMGE 698

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + DV+V+ GKG++T  I  + +K+   D +  RE L
Sbjct: 699 QGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 733


>gi|194467395|ref|ZP_03073382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
 gi|194454431|gb|EDX43328.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
          Length = 516

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 129/517 (24%), Positives = 216/517 (41%), Gaps = 55/517 (10%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L        +     VS DSR +++G +F    GN      ++  A  +GA A V    
Sbjct: 16  HLLDHVSNLTDFTATSVSYDSRKVKSGTLFFC-KGNFLP--KYLASAKEKGAIAYVAEKE 72

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
           Y             P ++V++ +K +SL  +  YG    ++  +A+TGT GK++ A F  
Sbjct: 73  YPE-------GEGLPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFAD 125

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTT-------PSPIYLAKALSYLSSQGVTHVSV 187
            I  +S  +   I   ST+     +            P  + L   +    + G+TH+ +
Sbjct: 126 HILAQS--TDNHIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRAAVNNGMTHLVM 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAI 245
           E SS    ++R+ G+K   G F N+  DHI    H T   Y + K    E+LL   +  +
Sbjct: 184 EVSSQAYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSAKCL 239

Query: 246 IYADDAYSKEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIH----------NKQQVTI 293
           I A+     +V    +A      +     +G  I L     I           ++ +  +
Sbjct: 240 INAETEKFIDVYYTAKATTQPEDIFLFARRGANIKLPDNAQIDFEYRNDLEDLHESEFEL 299

Query: 294 SVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   +       D  +   +PG++   NA+ A       G  +   +E L  +H + GR 
Sbjct: 300 TALTEKAKQLNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLSHVH-IRGRM 358

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKI 405
           E + +N+ G  IYVDYAH   SL+ +L  ++  T+   + VV G  GD+   +RP  GK 
Sbjct: 359 EMINSNTHG-TIYVDYAHNYASLKRLLAFLKRQTNADKVTVVLGATGDKGISRRPGFGKA 417

Query: 406 A-LDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQ 459
              +  D  I+T D+P  EDP  I  EI   I          + +R  AI+ AI+     
Sbjct: 418 LTEEQPDEVILTTDDPGFEDPMTIAREIDSYIDHDKVKNIQFEMDRETAIKKAIDGSGND 477

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           D++V+AGKG +    +   +     D  I R+ +  +
Sbjct: 478 DIVVLAGKGEDPYQKINGEDVPYPTDVKIARDYINEL 514


>gi|191637036|ref|YP_001986202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei BL23]
 gi|190711338|emb|CAQ65344.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus casei BL23]
 gi|327381063|gb|AEA52539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei LC2W]
 gi|327384238|gb|AEA55712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei BD-II]
          Length = 517

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/504 (22%), Positives = 198/504 (39%), Gaps = 51/504 (10%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    +++  +A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSS-FQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +            T+     D R      TP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPESDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             ++R+ G+    G F N+  DHI    H T   Y + K+    +LL      +I A+  
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETE 248

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----------CAIHNKQQVTISVEGKD- 299
           +  +V   A           +       K+             A   + + T+    +  
Sbjct: 249 HFDQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKA 308

Query: 300 ------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   +   L G+F   NA  A       G+D++  +  + K+  +PGR E      
Sbjct: 309 AALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVK-IPGRMEHTKVAG 367

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  
Sbjct: 368 HGA-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATE 426

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A +T D+P  EDP  I  EI   I        +  +R +AI  AI      D++VVAGKG
Sbjct: 427 AFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKG 486

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
            +    V         D  +++++
Sbjct: 487 ADPYQKVRGVNTPWPTDMAVVKQV 510


>gi|227534585|ref|ZP_03964634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187834|gb|EEI67901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 517

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/504 (22%), Positives = 198/504 (39%), Gaps = 51/504 (10%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    +++  +A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSS-FQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +            T+     D R      TP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             ++R+ G+    G F N+  DHI    H T   Y + K+    +LL      +I A+  
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETE 248

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----------CAIHNKQQVTISVEGKD- 299
           +  +V   A           +       K+             A   + + T+    +  
Sbjct: 249 HFDQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKA 308

Query: 300 ------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   +   L G+F   NA  A       G+D++  +  + K+  +PGR E      
Sbjct: 309 AALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVK-IPGRMEHTKVAG 367

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  
Sbjct: 368 HGA-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATE 426

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A +T D+P  EDP  I  EI   I        +  +R +AI  AI      D++VVAGKG
Sbjct: 427 AFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSGPNDIVVVAGKG 486

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
            +    V         D  +++++
Sbjct: 487 ADPYQKVRGVNTPWPTDMAVVKQV 510


>gi|227524711|ref|ZP_03954760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088195|gb|EEI23507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 514

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 215/497 (43%), Gaps = 48/497 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++    V+ +S+ +    +F    GN  +   ++  A  +GA   V    Y         
Sbjct: 31  DQSFQSVAYNSKVVSDNCLFFC-KGNFREA--YLADAQQRGASGYVSEKQYH-------- 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               P ++V N +K +SL ++  +G  ++    +A TGT GK++ A F + I  +     
Sbjct: 80  NVTIPGIIVKNIQKSMSLLSAAFFGFPQNSLPTIAYTGTKGKTTSAYFTKSILDKVYDRK 139

Query: 145 FQIGPT--STISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +  T  + + + ++D   + LTTP  + L   ++      +TH+ +E SS    + R+
Sbjct: 140 VALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRV 199

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
             ++   G F N+  DHI    H T   Y + K    E+LL      +I AD  +  +V 
Sbjct: 200 YNLRYDVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSKKCVINADSDHMVDVY 255

Query: 258 --KRAHNAGCRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVE----GKDF 300
              +A +    +     +G           ++  L    + +  Q +++S +    G D 
Sbjct: 256 YTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIQLISVSDKAKQLGIDG 315

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +   + G++   NA+ AA     +G     +   L     VPGR E   T   G  IYV
Sbjct: 316 TYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGLSH-TTVPGRMEIYSTKQHG-TIYV 373

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH   SL  +L  ++     G +IV+ G  GD+   +R  +GK   + A++A +T D+
Sbjct: 374 DYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGIDRREGLGKAINESANVAYLTTDD 433

Query: 420 PRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           P +EDP+ I  EI   I           +R  AI+ A+    + D++VVAGKGH+    +
Sbjct: 434 PATEDPKVIADEIAAYIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKGHDAFQKI 493

Query: 476 TNGEKKMSVDCDIIREI 492
                  + D  I+  +
Sbjct: 494 NGKNVPYAGDATIVANL 510


>gi|227902756|ref|ZP_04020561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|227869419|gb|EEJ76840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 532

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 197/497 (39%), Gaps = 49/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           VS DSR IQ   +F    G        ++  A + GA   V    Y              
Sbjct: 43  VSYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKSNGANCYVAEQPYPE-------GKGMH 92

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V +  K ++L ++  +    +++  +A TGT GK++ A F++ +  ++  G ++   
Sbjct: 93  ALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALIS 152

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D+     TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 153 SVNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 212

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H     Y + K+    +L+      II A+ A   EV   A  
Sbjct: 213 DLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETANFNEVYAAATT 268

Query: 263 AGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLF 304
                 +     +        V          + ++   F                D+  
Sbjct: 269 TTNPDSIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTL 328

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G++     + +  +  +PGR +   T   G  + VDYAH
Sbjct: 329 KMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRNVT-IPGRMQTERTKEHG-MVVVDYAH 386

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  +++ ++      +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 387 NKASMMALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFE 446

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  EI  GI         + +R +AI  AI      DV+++ GKG +    +   +
Sbjct: 447 DPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICGKGADAFQKIRGVD 506

Query: 480 KKMSVDCDIIREILGLI 496
                D  + ++++  +
Sbjct: 507 TPYPSDIVVAQQVINEL 523


>gi|58338066|ref|YP_194651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus NCFM]
 gi|75357189|sp|Q5FI54|MURE_LACAC RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|58255383|gb|AAV43620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus acidophilus NCFM]
          Length = 523

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 197/497 (39%), Gaps = 49/497 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           VS DSR IQ   +F    G        ++  A + GA   V    Y              
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKSNGANCYVAEQPYPE-------GKGMH 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V +  K ++L ++  +    +++  +A TGT GK++ A F++ +  ++  G ++   
Sbjct: 84  ALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALIS 143

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D+     TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DHI    H     Y + K+    +L+      II A+ A   EV   A  
Sbjct: 204 DLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETANFNEVYAAATT 259

Query: 263 AGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLF 304
                 +     +        V          + ++   F                D+  
Sbjct: 260 TTNPDSIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTL 319

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   N   A       G++     + +  +  +PGR +   T   G  + VDYAH
Sbjct: 320 KMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRNVT-IPGRMQTERTKEHG-MVVVDYAH 377

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  +++ ++      +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 378 NKASMMALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFE 437

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  EI  GI         + +R +AI  AI      DV+++ GKG +    +   +
Sbjct: 438 DPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICGKGADAFQKIRGVD 497

Query: 480 KKMSVDCDIIREILGLI 496
                D  + ++++  +
Sbjct: 498 TPYPSDIVVAQQVINEL 514


>gi|301065370|ref|YP_003787393.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|300437777|gb|ADK17543.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
          Length = 517

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 113/504 (22%), Positives = 197/504 (39%), Gaps = 51/504 (10%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    +++  +A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSS-FQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +            T+     D R      TP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             ++R+ G+    G F N+  DHI    H T   Y + K+    +LL      +I A+  
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETE 248

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----------CAIHNKQQVTISVEGKD- 299
           +  +V   A           +       K+             A   + + T+    +  
Sbjct: 249 HFDQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKA 308

Query: 300 ------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   +   L G+F   NA  A       G+D++  +  + K+  +PGR E      
Sbjct: 309 AALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVK-IPGRMEHTKVAG 367

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  
Sbjct: 368 HGA-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATE 426

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A +T D+P  EDP  I  EI   I        +  +R  AI  AI      D++VVAGKG
Sbjct: 427 AFLTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQRAIAEAISDSRPNDIVVVAGKG 486

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
            +    V         D  +++++
Sbjct: 487 ADPYQKVRGVNTPWPTDMAVVKQV 510


>gi|227510559|ref|ZP_03940608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190211|gb|EEI70278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 514

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 126/525 (24%), Positives = 222/525 (42%), Gaps = 51/525 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           KL  +   +   L+ +  +         ++    V+ +S+ +    +F    GN  +   
Sbjct: 3   KLAQITVDEVLMLLKEHDLLVKSQFSRLDQSFQSVAYNSKVVSDNCLFFC-KGNFREA-- 59

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           ++  A  +GA   V    Y             P ++V N +K +SL ++  +G    N+ 
Sbjct: 60  YLADAQQRGASGYVSEKQYH--------NVTIPGIIVKNIQKSMSLLSAAFFGFPQNNLP 111

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT--STISSFAQD---NRLTTPSPIYLA 171
            +A TGT GK++ A F + I  +       +  T  + + + ++D   + LTTP  + L 
Sbjct: 112 TIAYTGTKGKTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLF 171

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNA 229
             ++      +TH+ +E SS    + R+  +    G F N+  DHI    H T   Y + 
Sbjct: 172 TNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLHYNVGVFLNISPDHIGRNEHPTFADYLHC 231

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVM--KRAHNAGCRVLSVGYQG-----------KF 276
           K    E+LL      +I AD  +  +V    +A +    +     +G           ++
Sbjct: 232 K----EQLLVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEY 287

Query: 277 IHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             L    + +  Q +++S +    G D  +   + G++   NA+ AA     +G     +
Sbjct: 288 QSLADSLSENKIQLISVSDKAKRLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEI 347

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG 391
              L     VPGR E   T   G  IYVDYAH   SL  +L  ++     G +IV+ G  
Sbjct: 348 EYGLSH-TTVPGRMEIYSTKQHG-TIYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGST 405

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIE 447
           GD+   +R  +GK   + A++A +T D+P +EDP+ I  EI   I           +R  
Sbjct: 406 GDKGIDRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTS 465

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AI+ A+    + D++VVAGKGH+    +       + D  I+  +
Sbjct: 466 AIQKAVLESKQGDLVVVAGKGHDAFQKINGKNVPYAGDATIVANL 510


>gi|322411195|gb|EFY02103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 394

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 103/409 (25%), Positives = 178/409 (43%), Gaps = 24/409 (5%)

Query: 94  VVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +V + +K +SL A   Y    +   +L  TGT GK++ A F   I + S   +      +
Sbjct: 1   MVTDIKKAMSLIAMAFYDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNT 60

Query: 152 TI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           T+       ++LTTP  + L   ++     G+TH+ +E SS      R+ G+    G F 
Sbjct: 61  TLDGKTFFKSQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFL 120

Query: 211 NLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           N+  DHI    H T + YF  K  L E         +I +   +   +  +         
Sbjct: 121 NISPDHIGPIEHPTFEDYFYHKRLLMEN----SRAVVINSGMDHFLFLADQVAEQ----- 171

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +  F        I   Q  +    G+    +   L G F   NA+ A   C  +G 
Sbjct: 172 ----EHAFYGALSDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACFRLGA 227

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A + + + K   VPGR E +   +   +++VDYAH  +SLE +L  +    +G ++++
Sbjct: 228 SLADIQKGIAK-TRVPGRMEVLTMTNH-AKVFVDYAHNGDSLEKLLSVVEEHQTGNLVLI 285

Query: 388 FGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNR 445
            G  G++ + +R   G +     ++  I+T D+P  EDPE I  EI   I   I+   +R
Sbjct: 286 LGAPGNKGESRRADFGTVINQHPNLTVILTADDPNFEDPEDISQEIASHITRPIDIVSDR 345

Query: 446 IEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +AI+ A+ +    +D +++AGKG +   IV   +   + D  + +  L
Sbjct: 346 EQAIQKAMSLCQGPEDAVIIAGKGADAYQIVKGEKAPYAGDLAVAQRYL 394


>gi|148545136|ref|YP_001272506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184154468|ref|YP_001842809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227364299|ref|ZP_03848392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|325683498|ref|ZP_08163014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
 gi|167017294|sp|A5VMU5|MURE_LACRD RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148532170|gb|ABQ84169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           DSM 20016]
 gi|183225812|dbj|BAG26329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227070612|gb|EEI08942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|324977848|gb|EGC14799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 516

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 132/517 (25%), Positives = 216/517 (41%), Gaps = 55/517 (10%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L        +     VS DSR +++G +F    GN      ++  A  +GA A V    
Sbjct: 16  HLLDHVSNLTDFTATSVSYDSRKVKSGTLFFC-KGNFLP--KYLASAKEKGAIAYVAEKE 72

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
           Y             P ++V++ +K +SL  +  YG    ++  +A+TGT GK++ A F  
Sbjct: 73  YPE-------GEGLPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFAD 125

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTT-------PSPIYLAKALSYLSSQGVTHVSV 187
            I  +S  ++  I   ST+     +            P  + L   +      G+TH+ +
Sbjct: 126 HILAQS--TADHIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRVAVDNGMTHLVM 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAI 245
           E SS    ++R+ G+K   G F N+  DHI    H T   Y + K    E+LL   +  +
Sbjct: 184 EVSSQAYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSAKCL 239

Query: 246 IYADDAYSKEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIH----------NKQQVTI 293
           I A+     +V    +A      +     +G  I L     I           ++ +  +
Sbjct: 240 INAETEKFTDVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFEL 299

Query: 294 SVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   +       D  +   +PG++   NA+ A       G  +   +E L  +H + GR 
Sbjct: 300 TALTEKAKQLNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVH-IRGRM 358

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E + +N+ G  IYVDYAH   SL+ +L    R   +G++ VV G  GD+   +RP  GK 
Sbjct: 359 EMINSNTHG-TIYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKA 417

Query: 406 A-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQ 459
              +  D  I+T D+P  EDP  I  EI   I     K      +R  AI+ AI+     
Sbjct: 418 LTEEQPDEVILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSEND 477

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           D++V+AGKG +    V   +     D  I R+ +  +
Sbjct: 478 DIVVLAGKGEDPYQKVNGEDVPYPTDVKIARDYINEL 514


>gi|295693699|ref|YP_003602309.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate--l-lysi ne ligase
           [Lactobacillus crispatus ST1]
 gi|295031805|emb|CBL51284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus ST1]
          Length = 523

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 117/502 (23%), Positives = 201/502 (40%), Gaps = 59/502 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           VS DSR IQ   +F    G        ++  A   GA   V    Y              
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGF--RPTYLSMAKDNGAICYVAEQPYPE-------GKGMH 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS--GLSSFQI 147
            L+V +  K ++L ++  +    +++  +A TGT GK++ A F++ +  ++  G ++   
Sbjct: 84  ALIVRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALIS 143

Query: 148 GPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                +    +D+     TTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260
             G F N+  DHI    H     Y + K+    +LL      II A+ A+  EV   A  
Sbjct: 204 DLGFFLNISPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETAHFDEVYAAATT 259

Query: 261 ---------------------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                                     R  S     K      VCA    +++ I     +
Sbjct: 260 TTNPDSIYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPI-----N 314

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D+   + G+F   N   A       G++     + +  +  +PGR +   T   G  + 
Sbjct: 315 GDYTLKMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVT-IPGRMQTERTKKHG-MVV 372

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   S+  +++ +R      +IIV+ G  GD+   +RP   +     AD A +T D
Sbjct: 373 VDYAHNKASMMALMRFMRNEFNDPKIIVIVGAPGDKGVSRRPGFSESLTAYADKAFLTTD 432

Query: 419 NPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +P  EDP+ I  EI  GI         + +R +AI  AI M    DV+++ GKG +    
Sbjct: 433 DPGFEDPKSIAEEIDSGIDHSKCDVTIELDRNKAIHDAIAMATPDDVVLICGKGADAFQK 492

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           +         D  + ++++  +
Sbjct: 493 IRGVNTPYPSDIVVAQQVINEL 514


>gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
 gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
          Length = 458

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 187/475 (39%), Gaps = 43/475 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +D   +++   +   ++ +  ++ VS+D+R IQ G ++V + G K DGH F+  A+ +
Sbjct: 5   TLRDIQAMVDGRGL-ADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDK 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++ S      +   +  ++ P++VVD+T + L   A R   +    ++ +TG++GK
Sbjct: 64  GASAVLWS------ETEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    V  +             T  +     +       P+ L   L       +  V 
Sbjct: 118 TTTKDIVAALLA----------TTYKVQKTEGNLNNHIGVPLTL---LRLEEDVEMAVVE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S+ G  +   +  +  A   TN+G  H+    +++    AK+ +   L  K    + 
Sbjct: 165 MGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREGIAQAKLEILSGL-KKNGLFVY 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             D+      +         VL+ G   K   + + V    N    TI  +  +  F  P
Sbjct: 224 NGDEPLLASRVAHLPLPE-HVLTFGQGNKNDYYPESVHLQANGMMFTIR-QAANRSFFLP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+  VYNAL A  +    G+    V E L +L V   R E + T      I   Y   
Sbjct: 282 ILGKHHVYNALAALAVARFFGVSWENVQEALSRLQVTRMRMEVIETEKGWTVINDAYNAN 341

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             S++  L+ ++ +T   + + V G     GDR+      +G +        + T     
Sbjct: 342 PTSMKAALQLLQELTGYKKKMAVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFT----- 396

Query: 422 SEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV-AGKGH 469
                K+   I      F   G      ++    +  + +++  DV+++ A +G 
Sbjct: 397 ---YGKLARHIALAAQPFFPDGRVNAYEDKRALAKDLLAVVSPGDVILLKASRGM 448


>gi|326692780|ref|ZP_08229785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 495

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 117/511 (22%), Positives = 212/511 (41%), Gaps = 42/511 (8%)

Query: 5   DLIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQ 62
           +L  K   +L+    +       ++  + +  D+R ++   +FV + G  +     ++ Q
Sbjct: 2   ELTSKTIEQLLTAHHLLVAKPDSDQTFDFLHYDTRQVKDQTLFV-VKGAFRV---EYLAQ 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AV 120
           A   G   +V             +  + P   V + +K LS+ +   +     ++   A 
Sbjct: 58  AT--GVTGLVTEE---------LLPVDLPQWQVTDVQKALSVLSMAFFDYPQNDLWIGAF 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQI-----GPTSTISSFAQDNRLTTPSPIYLAKALS 175
           TGT GK++ A    QI Q        +       T    +  + + LTTP    L K + 
Sbjct: 107 TGTKGKTTAAYMAFQILQHMTNQHTALFSTVDRITGNQPADKKKSDLTTPESYELFKDMR 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+TH+ +E SS    + R+ G++   G+F N+  DHI    H + + Y   KM L
Sbjct: 167 RAVDNGMTHLVMEVSSQAYLKQRVYGLEFQVGAFLNISPDHIGPNEHPSFEDYLAHKMML 226

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQV 291
               L      I+ A       V+  A      V +     QG     + + +  ++ + 
Sbjct: 227 ----LDHAEQVIVNAASDQLSAVLAHAKTHHDHVYTYSQTDQGGEYTYQSLESAIHESRF 282

Query: 292 TI---SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           T+    +   +  +   LPG+F   NAL A  +    G   A ++  L+ +  +PGR   
Sbjct: 283 TVAESDLAEMNGTYRLNLPGDFNESNALAALIMTALAGAQHADMVAGLDTVF-IPGRMLS 341

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +     G   +VDYAH   S+  +L+        G++ VV G  G++   +R   G++  
Sbjct: 342 LPIPDHGVA-FVDYAHNYASMRALLQFAQSQYPDGKVSVVIGAPGNKGVSRRADFGRVVS 400

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQDVLV 463
           + AD   +T D+P+ E P  I  EI   I         + +RI+AI+ AI   N  D+++
Sbjct: 401 EFADTVFLTADDPQFESPMAIAKEIAAHITNPDVTVHFEMDRIQAIQQAIAQANPHDIVI 460

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           VAGKG +    +   ++    D  +++ +L 
Sbjct: 461 VAGKGEDPYQKINGVDEPYIGDYAVVQNVLN 491


>gi|227513568|ref|ZP_03943617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227083441|gb|EEI18753.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 511

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 215/497 (43%), Gaps = 48/497 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++    V+ +S+ +    +F    GN  +   ++  A  +GA   V    Y         
Sbjct: 28  DQSFQSVAYNSKVVSDNCLFFC-KGNFREA--YLADAQQRGASGYVSEKQYH-------- 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               P ++V N +K +SL ++  +G  ++    +A TGT GK++ A F + I  +     
Sbjct: 77  NVTIPGIIVKNIQKSMSLLSAAFFGFPQNSLPTIAYTGTKGKTTSAYFTKSILDKVYDRK 136

Query: 145 FQIGPT--STISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +  T  + + + ++D   + LTTP  + L   ++      +TH+ +E SS    + R+
Sbjct: 137 VALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRV 196

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
             ++   G F N+  DHI    H T   Y + K    E+LL      +I AD  +  +V 
Sbjct: 197 YNLRYDVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSKKCVINADSDHMVDVY 252

Query: 258 --KRAHNAGCRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVE----GKDF 300
              +A +    +     +G           ++  L    + +  + +++S +    G D 
Sbjct: 253 YTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIRLISVSDKAKQLGIDG 312

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +   + G++   NA+ AA     +G     +   L     VPGR E   T   G  IYV
Sbjct: 313 TYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGLSH-TTVPGRMEIYSTKQHG-TIYV 370

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH   SL  +L  ++     G +IV+ G  GD+   +R  +GK   + A++A +T D+
Sbjct: 371 DYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGIDRREGLGKAINESANVAYLTTDD 430

Query: 420 PRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           P +EDP+ I  EI   I           +R  AI+ A+    + D++VVAGKGH+    +
Sbjct: 431 PATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKGHDAFQKI 490

Query: 476 TNGEKKMSVDCDIIREI 492
                  + D  I+  +
Sbjct: 491 NGKNVPYAGDATIVANL 507


>gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
 gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
          Length = 455

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 179/444 (40%), Gaps = 35/444 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  V +DSR ++AG +FVA+ G+K DGH FI +A  +GA   +V       +F A +  
Sbjct: 25  TVTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGAAGAIVE------EFPAELPP 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +++V NT + L    +         ++ +TG++GK+S       +           G
Sbjct: 79  GFGVILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTSTKDLTASVL----------G 128

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               ++    +       P+ L   L    S  +    +  +  G             G 
Sbjct: 129 ENFQVTKTDGNLNNHIGLPLTL---LRARGSDQIGVFEMGMNHAGEIAPLAAMAAPEVGI 185

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI++  +++A    K  L  E LP     I+ A+D +S  +  R       V+
Sbjct: 186 ITNIGMAHIEFLGSREAIAQEKGML-AEALPPSGTLILSAEDEFSPAIAARTK---ADVV 241

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G     +    +    +  + TI+ EG+       +PGE  V NA++A     A G+ 
Sbjct: 242 LAGINKGEVFASDLRPSASGTKFTINAEGRTAAAELSVPGEHMVRNAMLAVAAGRAFGLS 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIV 386
                  L KL +  GR E      RG ++  D Y    +S+   L+ + ++ + GR I 
Sbjct: 302 LEECAAGLSKLRLTKGRLEQKMI--RGIQVIDDTYNANPDSVAAALRTLASMPAVGRRIA 359

Query: 387 VFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEK 442
           V G  G+     +    ++G++A      +++       E+ + I       G+   +  
Sbjct: 360 VLGRMGELGVEAERGHRLVGEVAAQTHVDSVIG----VGEEAQWITEAAWRGGVEKVVRV 415

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +  EA +   ++    D++++ G
Sbjct: 416 ESTEEATKVLRDLAKAGDLVLIKG 439


>gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
 gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
          Length = 461

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 101/479 (21%), Positives = 185/479 (38%), Gaps = 33/479 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+ N +S   +Q   + KI ++S DSR I  G +FVAI+G + DGH FIP+A+
Sbjct: 1   MIPMSLAEIRNAVSGKIIQGDPKSKITDISIDSRTINPGDMFVAIIGERFDGHSFIPEAV 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGT 123
           ++GA A++V       D S        I++V++T + L   A           ++ +TG+
Sbjct: 61  SKGARALIV-------DHSIKAYPGVGIILVEDTTRALQDLARYHRMLIKGLTVIGITGS 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  + +       +   T T  +                  LS    + + 
Sbjct: 114 AGKTTTKDMIASVLKE------KYNVTKTRGNLNNYYG-------LPLTLLSLDGDEEIA 160

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G  +      K   G  TN+G  H++  +T       K  L E L P    
Sbjct: 161 VLEMGMSKLGEIELLASISKPDIGVITNVGPTHLENLKTVGNVARGKRELIEGL-PTNGL 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFDF 302
           AI+  D+ Y +++                +        KV   +         + +    
Sbjct: 220 AILNYDNKYVRDMKDYVEGKKVIYYGFSPEADVYAEHIKVDEKNKNISFIAHYKTEKERI 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
               PG+  VYNAL A  +   + +D   +   L  + +   R++     +    I   Y
Sbjct: 280 TLQKPGKHNVYNALAAIAVARYLRVDWGGIKNGLYNIDLSSLRWDVRDLGNEITLINDTY 339

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDD 418
                S++  ++    I   R+I V G     G   ++    +   +A    D+ I   +
Sbjct: 340 NANPLSMKAAIEATFDIAQERVITVLGGMLELGDMEEKAHVDLGRYVAERNVDVLITVGE 399

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
             R       R+    G+    +  N  EA R  ++++ K D ++V G +G++   IV 
Sbjct: 400 LGR----LTARSAEKEGMKNVYQADNNQEASRVLLDLIKKGDTILVKGSRGNKMEEIVK 454


>gi|291533200|emb|CBL06313.1| UDP-N-acetylmuramyl-tripeptide synthetases [Megamonas hypermegale
           ART12/1]
          Length = 340

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 123/342 (35%), Positives = 178/342 (52%), Gaps = 15/342 (4%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174
            ++ VTGT+GK+S    ++ I +++G     IG     I         TTP  I L + L
Sbjct: 2   RMIGVTGTNGKTSSTYMLRDILRKAGYKVGVIGTIKIMIEDEEMPIHNTTPDVIDLQEIL 61

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  Q + +V +E SSH LD +R+ G +     FTNL +DH+DYH+T + Y  AK +LF
Sbjct: 62  DKMYKQNIDYVVMEVSSHALDMNRIAGCEYDTAMFTNLTQDHLDYHKTMENYALAKAKLF 121

Query: 235 E-----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNK 288
           +      L+     A+I  DD +  + M    +  C +++ G +   +   + V    + 
Sbjct: 122 DSLSAPNLVKSNKNAVINLDDEFGSKTM--IEHTKCNLITYGIKNDAVLKAENVEIKASG 179

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +  +     F   + G F VYN L   G+ +A  I   ++ E LE    V GRFE 
Sbjct: 180 ASFDVKYKDDCVHFDLKVTGMFNVYNILGVIGVALAEKISFDIIKETLEAFEAVAGRFEL 239

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +   + VDYAHT + LE +LK  R I   R+IVVFGCGGDRD+ KRPIMG+IA  
Sbjct: 240 V-RQGQDFSVIVDYAHTPDGLENVLKTAREIAKKRLIVVFGCGGDRDRTKRPIMGRIAAQ 298

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNR 445
           LAD+ I T DNPR+EDPE I +E+  G+       F EK +R
Sbjct: 299 LADVVIATSDNPRTEDPEFILSEVEAGVLPALHGNFHEKNHR 340


>gi|217031839|ref|ZP_03437342.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128]
 gi|298735536|ref|YP_003728057.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Helicobacter pylori B8]
 gi|216946491|gb|EEC25093.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128]
 gi|298354721|emb|CBI65593.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Helicobacter pylori B8]
          Length = 447

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 101/391 (25%), Positives = 185/391 (47%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHESIENYRDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   +            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 DPNLKEIALMHSP---------LLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V +      + VD+AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHSK---PLVVVDFAHTTDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPEM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
           G +A   A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI +A+E L   
Sbjct: 349 GAVASYYAHKIVLTSDNPRSENEEDIIKDILKGISNSSKVVVEKDRKKAILSALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++++
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 456

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 96/469 (20%), Positives = 176/469 (37%), Gaps = 37/469 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E+        +Q     ++N + +DSR  + G IFVA+ G + DGH F  +AI
Sbjct: 1   MLTYTIKEIAAVTGGTIIQGNPAAEVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            QGA A++V+        + T+     ++ V +T + L   A+    +    ++AVTG++
Sbjct: 61  EQGATALLVTK-------TVTVPPQVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSN 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    +  +         +     T  ++  +  L            + +   G   
Sbjct: 114 GKTSTKDMIAAVLNT------RYKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMG--- 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                   G         K      TN+G  H++   + Q    AK  + +  +  E  A
Sbjct: 165 ----MRGFGEIDLLARLAKPTGAVITNIGEAHLELLGSVQNIAAAKAEVLDH-IGAEGFA 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+  D     E+  +      +V      G+  +  + V       +  +S  G   +  
Sbjct: 220 ILNGDSP---ELRNQVSRCQGQVWFYSINGQTDLVARNVRVEGRGVRYDLSYPGGTGEIY 276

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   V N++ A G+ + +GI    ++  L ++ +   R E +  N     I   Y 
Sbjct: 277 LPIPGSHNVMNSMAAVGVGLRLGIPFTDIVRGLAQVELTGMRLEIIKAN-NMTVINDVYN 335

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDN 419
              +S +  LK +  +  GR I V G   +     + G R +    AL      +   D 
Sbjct: 336 ANPSSTKAALKVLAEVAPGRKIAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDL 395

Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R      I+     G+PG       N   AI    +++   D ++V G
Sbjct: 396 ARFTAQGAIKG----GLPGDRVHHCDNNKLAIEVLRQVMQPGDTILVKG 440


>gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 535

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 109/497 (21%), Positives = 209/497 (42%), Gaps = 45/497 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+     + I    I   +  E  IN+++  S+ ++   +FV I G++ DGH + 
Sbjct: 1   MNLTDLLKSVEIDSIRPNQIET-ELNEIDINKITYHSKEVETDTLFVCIKGHQTDGHNYA 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A++QGA  I+V               +   L V N+R+ L++ +S  + +  +  ++ 
Sbjct: 60  KHAVSQGATVIIVEQFIE--------DLDVLQLKVSNSREVLAILSSNFFDQPSKSMSLF 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VT T+GK+++    ++I +   L S  IG     I    + +RLTTP    L +  + +
Sbjct: 112 GVTATNGKTTITYMTEEIFKAYQLKSGIIGTIVVKIDKEIEMSRLTTPESYDLQQYFAKM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q +THVS+E SS  L+  R+        +FTN+  +HI  H + +AYF+AK  L    
Sbjct: 172 RDQEITHVSMEVSSSALELKRVYHTDFDVVAFTNISPEHIQLHDSFEAYFDAKASLIRN- 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISV 295
             K S AI+  D+   + ++  A     +V++ G + K   +    +          +++
Sbjct: 231 ASKMSTAILNLDE---QLLIPLAEETAAQVVTFGIENKSGTITVSDIRFSSGMPSFKVTI 287

Query: 296 EG------------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +               FD    +PG   +YNAL A    +   I    V   ++    V 
Sbjct: 288 QEPFNTLSGERIEPTSFDLELSIPGYHSIYNALTALVTGLVNDIPLEYVQRGIKNFRGVE 347

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RF+ +    +  ++  D     N+++  ++ I  +    + +V    G         + 
Sbjct: 348 RRFQIL--YDKEFKVIDDLLLNQNNIDSCMETINHLDYNELHLVHALRGSNGPAHSTEIA 405

Query: 404 KIALDLAD-----IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--------EAIR 450
           +              I+T  +      + +  E +      +++ N          +A+R
Sbjct: 406 ESLAKWFHELKISKIILTTASSHVAKKDAVTDEELAAFLKVMKQSNIEVTFSTELDDALR 465

Query: 451 TAIEMLNKQDVLVVAGK 467
             +E LN++DVL+++G 
Sbjct: 466 FGVERLNEEDVLLISGA 482


>gi|152990002|ref|YP_001355724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
 gi|151421863|dbj|BAF69367.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
          Length = 430

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 103/384 (26%), Positives = 174/384 (45%), Gaps = 24/384 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA--KA 173
             + VTGT+GK++ A+ +       GL +   G         Q  + +  +P  L     
Sbjct: 57  KTIGVTGTNGKTTTAAAIYSYLNDLGLKAALQGTRGFFIEDEQLEKKSLTTPPILQTLYH 116

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +     QG T+  +E SSH + Q+R++ ++     FTN+ +DH+DYH+T Q Y   K   
Sbjct: 117 MYTAKQQGATYFVMEVSSHAIAQNRIEDLQFALKVFTNISQDHLDYHKTMQNYIATKSSF 176

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F      E   +I  DD + +   K A        +   +    +     ++ N     +
Sbjct: 177 F----MDEGSKLINKDDKHIQYNPKGAR-------TYSVEELATYQILAFSMQNGISAVL 225

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTN 352
               +  DF  P+ G F +YN   A      +  +    + E  E    V GR + +   
Sbjct: 226 RFGNEMIDFHAPMIGLFNLYNVTAAISAVHMLTNLPLQQICEVTEHFAGVKGRMQILNEE 285

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I VD+AHT + ++ + +   +    +++ +FG GGDRD+ KR +MG +A      
Sbjct: 286 ---PLIIVDFAHTPDGMQKVFE---SFPGKKLVAIFGAGGDRDRSKRALMGNVASRFCTK 339

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             +T DNPRSEDP++I  +I  GI   +   +  +R EA+  A   L K ++L++ GKG 
Sbjct: 340 IYLTSDNPRSEDPKQIIEDIAKGIETDVFVEKIVDRKEAVEKAFHSLQKDEILLILGKGD 399

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I  NG K    D +++ +I+
Sbjct: 400 EEY-IEQNGTKIPYSDVEVVTDII 422


>gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 442

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 98/465 (21%), Positives = 174/465 (37%), Gaps = 39/465 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           M   +  I   S DSR+++ G +FV + G+K DGH FI +AI  GA   +V+    L   
Sbjct: 1   MGDPDTVITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRR 60

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            +       ++ V++T   L   A +   K   +++AVTG+ GK++    +  +      
Sbjct: 61  HSVHPP--LVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAE--- 115

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                    +I     +       P+ L   L       V  + +  ++ G      +  
Sbjct: 116 -------KYSILKTHGNLNSEIGLPLML---LELTQHHQVAVLEMGMNNQGEIARLCELA 165

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G  T +   HI+   + +    AK  L E LLP    AI+  DD + + +  +   
Sbjct: 166 RPNVGVITRIAESHIEKLGSLENIAEAKGELLENLLP-GGTAILNCDDNWVRRLRSKVPG 224

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               VL  G     +    V    +K    I    K      PL G+  + NAL A  + 
Sbjct: 225 ---EVLYYGLTDGDLSAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVG 281

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT 380
              G+D    +  LE       R +          I +D  + +N  S       +  + 
Sbjct: 282 RVFGLDLTQSIRALEGFTGTSMRNQI---KYHKDMIIIDDTYNANVQSTLAAFDVLTNLP 338

Query: 381 SGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS--EDPEKIRAEIIH 434
             R I V    F  G   ++  + +  +      D  I   +  ++  E  +K+      
Sbjct: 339 LNRRIAVLGDMFELGDYTEKAHKTVGEQAVNRGFDYLITVGELSKTTQEAADKL------ 392

Query: 435 GIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
           G+P    I   +R +AI+  ++++   D ++V G +G     IV 
Sbjct: 393 GMPEHQNIHVADREQAIQRILQIVKSGDGILVKGSRGMAMEKIVN 437


>gi|296272311|ref|YP_003654942.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096485|gb|ADG92435.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 425

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 118/466 (25%), Positives = 187/466 (40%), Gaps = 57/466 (12%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           + +S+       FV      E    FI  A   G +  + S                   
Sbjct: 11  TDNSKEADKNSAFV-YSKQNE---KFIEDAKKNGCKEFIKSEDL---------------- 50

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                                  ++ +TGT+GK++ A+ +  +    G      G     
Sbjct: 51  -------------KNHCDFTSIKVIGITGTNGKTTTAAAIYSLLLDLGYKVALQGTRGFF 97

Query: 154 SSFAQDNRLTTPSPIYL--AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +  +    +  +P+ L     +            +E SSH ++Q R++G+       TN
Sbjct: 98  INEQRVEEYSLTTPVQLGNFAHIQKAIENSCDFFVMEVSSHAIEQKRIEGLNFELKILTN 157

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + RDH+DYH+T + Y N K   F      +S  +I  D+        +A       L+ G
Sbjct: 158 ITRDHLDYHKTIEEYINVKNSFF----NDDSKKLINKDE-------IKAKFNPKNCLTYG 206

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSA 330
                 +  +  +  +   V +    K   F   + G F VYN   A             
Sbjct: 207 LDSPSTYKVQAYSFKDGMHVALQNFEKVESFTSMMMGLFNVYNLTAAIAAVHMTTNKSLN 266

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E +E    V GR E +  N     I VD+AHT + ++ +L+   +     IIVVFG 
Sbjct: 267 EICEAVENFAGVSGRMETLSLN---PYIIVDFAHTPDGMKEVLQ---SFGHKDIIVVFGA 320

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447
           GGDRD+ KRPIMGK+A   A   IVT DNPR EDP+ I  +I+ GI        + NR  
Sbjct: 321 GGDRDKAKRPIMGKVADTFAKHIIVTSDNPRFEDPDLIIEDILEGINDKSKVEVEINRKI 380

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AI+ AI++ ++  V++V GKG E    + + +K    D ++I   L
Sbjct: 381 AIKKAIDLYSENSVILVLGKGDEEYQTIYD-QKLPFSDKEVINSYL 425


>gi|108563844|ref|YP_628160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPAG1]
 gi|107837617|gb|ABF85486.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori HPAG1]
          Length = 447

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/412 (25%), Positives = 191/412 (46%), Gaps = 28/412 (6%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+ +     L     + Y      I+ +TGT+GK++ AS +  +       +  +G    
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 153 ISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +    ++  LTTP+ + L   L         +  +E SSH + Q R+ G+       T
Sbjct: 105 FINDERIKEKGLTTPTLLELYSDLEEAVRLKCEYFIMEVSSHAIVQKRVAGLDFALKILT 164

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAG 264
           N+  DH+D+H++ + Y +AK   F++     +   E+ A+    +A++  + K+AH N  
Sbjct: 165 NITSDHLDFHKSIENYRDAKNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQ 224

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCI 323
              L+        + + +   + K+   I            L G + +YN L    G+ +
Sbjct: 225 AFSLTPSISASLCYQQDLRDPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKL 275

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +   ++   LE  + V GR E V +      + VD+AHT++ ++ + +   +  + +
Sbjct: 276 LTQLPLEVIAPLLENFYGVKGRLEIVHSK---PLVIVDFAHTTDGMQQVFE---SFKNQK 329

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           I  +FG GGDRD+ KRP MG IA   A   ++T DNPRSE+ E I  +I+ GI      I
Sbjct: 330 ITALFGAGGDRDKTKRPKMGAIASCYAHQIVLTSDNPRSENEEDIIKDILKGISDSSKVI 389

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            + +R +AI  A+E L   +VL++ GKG E   I  +       D +++++ 
Sbjct: 390 VEKDRKKAILNALENLKDDEVLLILGKGDENTQIFKDKTI-FFSDQEVVKDY 440


>gi|295398699|ref|ZP_06808721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
 gi|294973052|gb|EFG48857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
          Length = 514

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/495 (24%), Positives = 209/495 (42%), Gaps = 40/495 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             E  IN ++ DSR + A  +FV   G       ++  A+ +GA A +    Y+      
Sbjct: 29  ADEVIINRITFDSRAVTANTLFVC-KGLNFK-ASYLKDAVDRGAVAYLSEQDYA------ 80

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASFVQQICQRSGL 142
              ++ P ++V++ R  ++  A+  Y    +++     T  K     A FV QI      
Sbjct: 81  ---ADIPGIIVEDIRLAMAQLANFFYQSPWQDVAISGITGTKGKTTTAGFVNQILTLDSQ 137

Query: 143 SSFQIGPTSTISSFAQDNRLTTP------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              Q  P    S+F  D    TP        + L + L+ +   GV   ++E SS  L  
Sbjct: 138 EKGQPLPGFVSSTFNYDGLEKTPSTLTTPEAMDLYEMLATMRDNGVKRATMEVSSQALKY 197

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           HR D +K+   +F N+  DHI    H T   YF +K+R+F+        A+I  D  + +
Sbjct: 198 HRADDVKMEVVAFLNISPDHISPVEHPTFADYFQSKLRIFDH----GKVAVINEDTDHYE 253

Query: 255 EVMKRAHNA--GCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           E++K A +A    R+++V  +         ++     KQ   +  +G++      + G F
Sbjct: 254 EILKAAEDAENIQRIVTVSRKNPAADYFADELAFSETKQTFVVKNQGEEIPMALNVLGHF 313

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NALVAA +     ++ A + + L       GR E   +        VD+AH   S E
Sbjct: 314 NINNALVAAAIARENDVEWATIQKALGDAK-TDGRMEIYRSTDNQLTFVVDFAHNKISFE 372

Query: 371 MILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +  +++ +     I +VFG  G + + +R  MG++A    +   +T D+P  ED  KI 
Sbjct: 373 ELFSSVKEMAPDNDIRIVFGSAGGKAENRRADMGRVAGLNTNEIYLTSDDPNFEDSYKIM 432

Query: 430 AEIIHGI------PGFIEKGNRIEAIRTAIEML---NKQDVLVVAGKGHETVHIVTNGEK 480
           AEI   I             +R  +I  A +      K   +VVAGKG E    +    +
Sbjct: 433 AEIEEAINEVNPDAKVRSNLDRTGSIYMAYKDAIASGKPTTIVVAGKGSEDTIKINGRNE 492

Query: 481 KMSVDCDIIREILGL 495
               D + +++++  
Sbjct: 493 FYVPDFEYVQQLIAF 507


>gi|330718777|ref|ZP_08313377.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc fallax KCTC
           3537]
          Length = 469

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 126/490 (25%), Positives = 222/490 (45%), Gaps = 53/490 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNT 90
           +  D+R ++   +FV + GN      F P+ +    G   IV +    +         + 
Sbjct: 1   MHYDTRQVKPNTLFV-VKGN------FNPKYLENAVGITGIVTTKPLDI---------DI 44

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI- 147
           P  +V NT++ LSL ++  + +  + +   A+TGT GK++ A F   I + +  +   + 
Sbjct: 45  PQWIVSNTQQALSLLSAEFFDRPQDKLWIGAITGTKGKTTTAYFAYYILKHATQNRTALF 104

Query: 148 ----GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                 T   +S  + + LTTP    L K +      G+TH+ +E SS    + R+ G+ 
Sbjct: 105 STVDRITGPQASDKKKSDLTTPESYELFKDMRQAVDNGMTHLIMEVSSQAYLKDRVYGLH 164

Query: 204 LIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MK 258
              G+F N+  DHI    H T + Y   K+ L    L      +I  +  +  E+    K
Sbjct: 165 FDVGTFLNISPDHIGPNEHPTFEDYLAHKLML----LDHSDTIVINDETDHHDEIFSHAK 220

Query: 259 RAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGK-------DFDFLFPLP 307
           + H AG  + +       QG ++ +    AIH +   T+S + K          +   +P
Sbjct: 221 QNHEAGKSLYTYSSNRQNQGDYVFISNDSAIH-ESHFTVSEQHKVEQLSEIIGHYRLNIP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+F   NAL A  +    G     +++ L+++  +PGR   +   S G   +VDYAH   
Sbjct: 280 GDFNESNALAALMIAGFAGAKHQDMVQGLDEVF-IPGRMLSMPIPSHGVA-FVDYAHNYA 337

Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           S+  +L        +G++IVV G  G++   +R   GK+  +LAD+  +T D+P+ EDP 
Sbjct: 338 SMHALLSFAQSKYPTGKVIVVVGSPGNKGVSRRADFGKVIGELADVVFLTADDPQYEDPA 397

Query: 427 KIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I  EI   I         + +RI+AI  AI    +QD+++VAGKG +    +   +   
Sbjct: 398 DIANEIACHINNDHVVVHFEMDRIKAIHAAIASAGEQDIVIVAGKGEDPYQKINGQDVPY 457

Query: 483 SVDCDIIREI 492
             D  +++++
Sbjct: 458 IGDYAVVKQL 467


>gi|320528691|ref|ZP_08029843.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
 gi|320130901|gb|EFW23479.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
          Length = 506

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 124/513 (24%), Positives = 205/513 (39%), Gaps = 41/513 (7%)

Query: 1   MK---LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK   L+D I     + +              +  VS DS+ +    +F+   G      
Sbjct: 1   MKKYLLKDYISFLQEKNVLGDVNLSDTCMNTVVALVSCDSQQVVRNTLFLC-KGVHFK-A 58

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  A+ +GA A +    Y           N P + + N R  ++  A+  Y   P   
Sbjct: 59  QYLQDAVNKGAFAYLSEVEYP--------EVNIPWIPLTNVRYAMANLATMYYND-PWKE 109

Query: 118 LAVTGTSGKSS-------VASFVQQICQRSGLSS-FQIGPTST-ISSFAQDNRLTTPSPI 168
           L V G +G          V + +    +R G +    I    T       ++ LTTP P+
Sbjct: 110 LNVIGLTGTKGKSTTTYYVKAILDTYLERVGKNESAVISSIGTYDGVERFESHLTTPEPL 169

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAY 226
            L +  S      +  V++E SS  L   R+ G+     +F N+G DHI    H T + Y
Sbjct: 170 DLERHFSNAVESKIDFVTMEVSSQALKYDRVLGVNFSVAAFLNIGYDHISSVEHPTWEDY 229

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           F +K+R+FE+     +  ++  D  +  E++  A  A  +V++                 
Sbjct: 230 FASKLRIFEQC----TYGLVNLDSDHCDEILDAAKAAK-KVITFSEANDTADFYGYDVHK 284

Query: 287 NKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               +   V G DFD  F   +PG F V NAL A  +     I    +   L     VPG
Sbjct: 285 VGNDIVFKVRGSDFDEEFKLSMPGLFNVSNALCAIAIARLYDIPVRDIQAGLYHAK-VPG 343

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMG 403
           R E   +N +     VDYAH   S + + +++R+   G    ++FGC G + + +R  +G
Sbjct: 344 RMEIYTSNDKKITAIVDYAHNQLSFQKLFESVRSEYPGYRATIIFGCPGKKAKDRRHDLG 403

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML--- 456
           +IA   AD   +T+++   EDP  I  EI   +      +    +R +AI  A+E     
Sbjct: 404 EIAGKNADYIYLTEEDAGEEDPLAIAHEIARAVEKEKAPYEIIIDREKAIARAVEDAANV 463

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
               V+++ GKG ET          +  D   +
Sbjct: 464 QGNTVILITGKGAETRQKRGTEYIPVMSDVACV 496


>gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 457

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/456 (20%), Positives = 172/456 (37%), Gaps = 40/456 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S+DSR I+ G +F+ + G + +G  FI  A+  G  A +  S   ++        N
Sbjct: 25  VSGISTDSRTIKPGDLFIPLKGERFNGEKFIDDALNVG-SASLTESTNCIRH------DN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            PI+ V++T+  L   A     K     +AVTG+SGK++    +  +         +   
Sbjct: 78  KPIIFVEDTKDALHRIAKYYRSKFNIPFIAVTGSSGKTTTKDMIYDVLS------MKYNV 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             TI +F                  +      +  V +  S  G  +   +        +
Sbjct: 132 LKTIGNF-------NNEIGLPLTLFTLNDDHDMAVVEMGMSGFGEIRRLKNIASPNVAVY 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  HI+   +++    AK  L E+        +I ADD     ++K     G + ++
Sbjct: 185 TNIGVAHIEKLGSRENILKAKSELIEDF-KNGDTVVINADDDM---LIKMLEKKGPKFVT 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G     I    +       +  + ++G   D    +PG+  +YN+L A  + I   ++ 
Sbjct: 241 YGINNGDIKAFDIELNEESSKYKVLIDGYVLDVELNVPGKHNIYNSLAAICIGIQFDVNK 300

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV- 387
             + + L K      R   +     G +I  D Y    +S++  L  +   T  R + V 
Sbjct: 301 EDIRKALAKFQPSAMRLNIIDVA--GIKIINDVYNANPSSMKAALSVLGGYTERRKVAVL 358

Query: 388 ---FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGI--PGFIE 441
                 G  +D   R +   +  +  D+ I   D        KI    I  G+       
Sbjct: 359 GNMLELGQYKDIAHREVGEYVKENDIDVLITVGDYA-----LKIADGAIEKGMNNDNVFR 413

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
             N  EAI     ++ + D+ +V G +G E   IV 
Sbjct: 414 CANNAEAIDVIKNIMKESDIFLVKGSRGMEMEEIVK 449


>gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
 gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
          Length = 460

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 173/445 (38%), Gaps = 41/445 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS DSR I+   +F+A+ G + DGH F+  A  +GA A+++S +  L+     I  +  
Sbjct: 28  NVSIDSRTIKENDLFIALKGERFDGHDFVINACKKGASAVIISDSECLEK----ISEDCT 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           + +V +T+K     A     +    ++AVTG++GK++    +  +              S
Sbjct: 84  VFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKDMISALL-------------S 130

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           +  +     +            L+         V +     G  +   +  K   G  TN
Sbjct: 131 SKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIKELCNIAKPTIGVITN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  HI    +++    AK  L  + LP+   A++  DD++ K++     N   RV+  G
Sbjct: 191 VGTSHIGILGSKENIAKAKGELI-QSLPENGIAVLNGDDSFVKKM---GENFKGRVIYYG 246

Query: 272 YQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             G +  + +KV   +   + T     + F     L G   VY+AL A      +G+D  
Sbjct: 247 LNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTARILGVDVT 306

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
            +   L       GR   +  N  G +I  D Y     S+EM L++++ I++    +V  
Sbjct: 307 KIQRVLSDFSPRAGRQSLIEIN--GIKIIDDAYNANPLSMEMALRSLKQISAKNKYLVLA 364

Query: 390 CGGDRDQGKRPIMGKIALDLAD---IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEK 442
              +  + +     +I L  AD     I+T           +   I  G        I  
Sbjct: 365 DMKELGENEEKFHYEIGLKAADMGFCGIIT--------VGDLAKFIAKGAKEKGMKMIYS 416

Query: 443 GNR-IEAIRTAIEMLNKQDVLVVAG 466
            +   EA    + +    DV ++ G
Sbjct: 417 FDTCKEAAECILNIAKAGDVFLLKG 441


>gi|319955885|ref|YP_004167148.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
 gi|319418289|gb|ADV45399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
          Length = 434

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 166/368 (45%), Gaps = 23/368 (6%)

Query: 132 FVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  +    G S+   G           ++  +TTPS +     +      G  +  +E 
Sbjct: 77  LIYSLLIDLGYSAALQGTRGLFVDDRPIEEKHMTTPSILETLWNMKRAKEAGAEYFVMEV 136

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH +DQ R++G+       TN+ RDH+DYH T + Y   K   F +    +S  ++  D
Sbjct: 137 SSHAIDQDRIEGLDFALKVHTNVTRDHLDYHGTLEEYRRVKSLFFSD----DSLKLLNKD 192

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +      +K          + G +          ++ N     +    +   F   + G 
Sbjct: 193 E------IKSITFNPKNAYTYGVEEPATFKVLAYSLQNGISAVVQFRQEQEAFFSNMMGL 246

Query: 310 FQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           F +YN L A      +     A + + +E    V GR E V        I VD+AHT + 
Sbjct: 247 FNLYNLLAAIASVKLLTDRPLAEICDVVENFGGVSGRMEVVSAK---PTIIVDFAHTDDG 303

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +  +L    ++    ++VVFG GGDRD+GKRP MG +A   A    VT DNPRSEDPE I
Sbjct: 304 MYRVLD---SLKDKDLVVVFGAGGDRDRGKRPRMGAVAGRFAKKIYVTSDNPRSEDPEAI 360

Query: 429 RAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            AEI+ G+    G     +R EAI  AI+ L + ++L++ GKG E+   +  G K    D
Sbjct: 361 IAEILQGLKGKEGVRAIVDRREAIERAIDELQEDEILLILGKGDESTQEIA-GVKHPFDD 419

Query: 486 CDIIREIL 493
            +++R+IL
Sbjct: 420 REVVRQIL 427


>gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 458

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/475 (20%), Positives = 186/475 (39%), Gaps = 43/475 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +D   +++   +   ++ +  ++ VS+D+R IQ G ++V + G K DGH F+  A+ +
Sbjct: 5   TLRDIQAMVDGRGL-ADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDK 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++ S      +   +  ++ P++VVD+T + L   A R   +    ++ +TG++GK
Sbjct: 64  GASAVLWS------ETEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    V  +             T  +     +       P+ L   L       +  V 
Sbjct: 118 TTTKDIVAALLA----------TTYKVQKTEGNLNNHIGVPLTL---LRLEEDVEMAVVE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S+ G  +   +  +  A   TN+G  H+    +++    AK+ +   L  K    + 
Sbjct: 165 MGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREGIAQAKLEILSGL-KKNGLFVY 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             D+      +         VL+ G   K   + + V    N    TI  +  +  F  P
Sbjct: 224 NGDEPLLASRVAHLPLPE-HVLTFGQGNKNDYYPESVHLQANGMMFTIR-QAANRSFFLP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+  VYNAL A  +     +    V E L +L V   R E + T      I   Y   
Sbjct: 282 ILGKHHVYNALAALAVARFFDVSWENVQEALSRLQVTRMRMEVIETEKGWTVINDAYNAN 341

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             S++  L+ ++ +T   + + V G     GDR+      +G +        + T     
Sbjct: 342 PTSMKAALQLLQELTGYKKKMAVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFT----- 396

Query: 422 SEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV-AGKGH 469
                K+   I      F   G      ++    +  + +++  DV+++ A +G 
Sbjct: 397 ---YGKLARHIALAAQPFFPDGRVNAYEDKRALAKDLLAVVSPGDVILLKASRGM 448


>gi|227514106|ref|ZP_03944155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087477|gb|EEI22789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 518

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 129/508 (25%), Positives = 214/508 (42%), Gaps = 47/508 (9%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L +    +R+     V  +S+ +Q+  +F    G       ++ +AI +GA A V   +
Sbjct: 24  GLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQS 81

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQ 134
           Y         ++    L+V N ++ ++L ++  YG    ++ A+  TGT GK+S A F  
Sbjct: 82  Y---------QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAA 132

Query: 135 QICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                       +  T   S        ++LTTP  + L + L      G+TH+ +E SS
Sbjct: 133 TALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSS 192

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 R+  +    G F N+  DH+    H     Y   K    E+LL   S  ++   
Sbjct: 193 QSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCK----EQLLLNSSVCVLNTQ 248

Query: 250 DAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK-- 298
             + +EV + A    A  ++   G  G    L     I        N Q   +S  G   
Sbjct: 249 MDHFEEVYQAAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSAL 308

Query: 299 --DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D ++   + G++ V NA  AA      G+    + E   ++H + GR E + T   G 
Sbjct: 309 MLDGEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVH-IAGRMEVIRTQEHG- 366

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
            +YVDYAH   S++ +L  ++         +I VV G  G++   +RP +GK  A +  +
Sbjct: 367 TVYVDYAHDYASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVN 426

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T D+P  EDP+ I AEI   I            +R EAI TAI+     D++V+AG
Sbjct: 427 RVILTTDDPAFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAG 486

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   +     D  + R+++ 
Sbjct: 487 KGTDQYQKVAGVDTPYPGDIAVARQVIA 514


>gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
          Length = 460

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 173/445 (38%), Gaps = 41/445 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS DSR I+   +F+A+ G + DGH F+  A  +GA A+++S +  L+     I  +  
Sbjct: 28  NVSIDSRTIKENDLFIALKGERFDGHDFVINACKKGASAVIISDSECLEK----ISEDCT 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           + +V +T+K     A     +    ++AVTG++GK++    +  +              S
Sbjct: 84  VFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKDMISVLL-------------S 130

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           +  +     +            L+         V +     G  +   +  K   G  TN
Sbjct: 131 SKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIEELCNIAKPTIGVITN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  HI    +++    AK  L  + LP+   A++  DD++ K++     N   RV+  G
Sbjct: 191 VGTSHIGILGSKENIAKAKGELI-QSLPENGIAVLNGDDSFVKKM---GENFKGRVIYYG 246

Query: 272 YQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             G +  + +KV   +   + T     + F     L G   VY+AL A      +G+D  
Sbjct: 247 LNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTARILGVDVT 306

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
            +   L       GR   +  N  G +I  D Y     S+EM L++++ I++    +V  
Sbjct: 307 KIQRVLSDFSPRAGRQSLIEIN--GIKIIDDAYNANPLSMEMALRSLKQISAKNKYLVLA 364

Query: 390 CGGDRDQGKRPIMGKIALDLAD---IAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEK 442
              +  + +     +I L  AD     I+T           +   I  G        I  
Sbjct: 365 DMKELGKNEEKFHYEIGLKAADMGFCGIIT--------VGDLAKFIAKGAKEKGMKMIYS 416

Query: 443 GNR-IEAIRTAIEMLNKQDVLVVAG 466
            +   EA    + +    DV ++ G
Sbjct: 417 FDTCKEAAECILNIAKAGDVFLLKG 441


>gi|299783726|gb|ADJ41724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 518

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 129/508 (25%), Positives = 213/508 (41%), Gaps = 47/508 (9%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L +    +R+     V  +S+ +Q+  +F    G       ++ +AI +GA A V   +
Sbjct: 24  GLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQS 81

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQ 134
           Y  +            L+V N ++ ++L ++  YG    ++ A+  TGT GK+S A F  
Sbjct: 82  YQNE---------ATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAA 132

Query: 135 QICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                       +  T   S        ++LTTP  + L + L      G+TH+ +E SS
Sbjct: 133 TALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSS 192

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 R+  +    G F N+  DH+    H     Y   K    E+LL   S  ++   
Sbjct: 193 QSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCK----EQLLLNSSVCVLNTQ 248

Query: 250 DAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK-- 298
             + +EV + A    A  ++   G  G    L     I        N Q   +S  G   
Sbjct: 249 MDHFEEVYQAAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSAL 308

Query: 299 --DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D ++   + G++ V NA  AA      G+    + E   ++H + GR E + T   G 
Sbjct: 309 MLDGEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVH-IAGRMEVIRTQEHG- 366

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
            +YVDYAH   S++ +L  ++         +I VV G  G++   +RP +GK  A +  +
Sbjct: 367 TVYVDYAHDYASVKRLLAFLKGQQYQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVN 426

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T D+P  EDP+ I AEI   I            +R EAI TAI+     D++V+AG
Sbjct: 427 RVILTTDDPAFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAG 486

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   +     D  + R+++ 
Sbjct: 487 KGTDQYQKVAGVDTPYPGDIAVARQVIA 514


>gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-208]
          Length = 339

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 94/356 (26%), Positives = 161/356 (45%), Gaps = 30/356 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 4   MKLN--------ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+  +   +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 56  ASRAVELGAVAIIAENQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 107 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T   Y NAK  LF +
Sbjct: 167 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 226

Query: 237 LLPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADDA S   ++        V++ G  Q        +    +   
Sbjct: 227 LGNSYHTSNPKMAVLNADDAES---VRMQTATAAHVITFGIKQQADFKASNIQITSHGST 283

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             ++    ++     + G F VYN L A     A+ I     +  LE +  V G F
Sbjct: 284 FDLATPVGEYTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGXF 339


>gi|167614194|gb|ABZ89698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 362

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 104/359 (28%), Positives = 170/359 (47%), Gaps = 18/359 (5%)

Query: 149 PTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              T+ +       D + TTP  IY+   L     +    V++E SSHGL Q+R+  I  
Sbjct: 6   TMGTLGNGFLKSLHDTKNTTPEAIYIQSFLYMAVEKKTKLVTMEVSSHGLVQNRVKEIPF 65

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+ +DH+D+H   + Y +AK   F +   K    I+ A+D   +  ++R  N  
Sbjct: 66  HIGILTNISQDHLDFHGNMENYKSAKWSFFSK--HKIKKVILNANDKCGQIWLRRLFNVY 123

Query: 265 CRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +++       Y  K+I+   +    N   +T        +    L G+F   N L++
Sbjct: 124 TIAVTIKDSTQKKYATKWINATHLQYDKNGTNITFESSWGSGNIKSYLIGDFNAINLLLS 183

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + +G     ++    K+  + GR E V  N++     +DYAHT ++L+  L +IR 
Sbjct: 184 LACLLELGYKIYDLINTSYKIQPINGRMETVFHNNK-LVFIIDYAHTPDALKKALNSIRL 242

Query: 379 ITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             +   I  +FGCGG+RD+ KRP+MG IA  +A+  I+T+DNPR+E  E I  +I++G  
Sbjct: 243 HYNQSYIWCIFGCGGNRDKKKRPLMGSIAEKIANKVIITNDNPRNEKEENIINDILNGCK 302

Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                    NR +AI  A        ++ +AGKGHE   I+ N     S D  ++  +L
Sbjct: 303 NPKKIFIIPNRKQAISYAFHQSQDDHIIFLAGKGHEDKQIIQNKHINYS-DKKVVLNLL 360


>gi|227543711|ref|ZP_03973760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300908776|ref|ZP_07126239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
 gi|227186279|gb|EEI66350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894183|gb|EFK87541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
          Length = 516

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 131/515 (25%), Positives = 216/515 (41%), Gaps = 55/515 (10%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L        +     VS DSR +++G +F    GN      ++  A  +GA A V    
Sbjct: 16  HLLDHVSNLTDFTATSVSYDSRKVKSGTLFFC-KGNFLP--KYLASAKEKGAIAYVAEKE 72

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
           Y             P ++V++ +K +SL  +  Y     ++  +A+TGT GK++ A F  
Sbjct: 73  YPE-------GEGLPAIIVNDEQKAMSLLGAAFYDYPQNDLFIIAITGTKGKTTTAYFAD 125

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLT-------TPSPIYLAKALSYLSSQGVTHVSV 187
            I  +S  ++  I   ST+     +           TP  + L   +    + G+TH+ +
Sbjct: 126 HILAQS--TANHIALFSTLDRILGNKPEDEFKSDLTTPESLDLFHDMRAAVNNGMTHLVM 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAI 245
           E SS    ++R+ G+K   G F N+  DHI    H T   Y + K    E+LL   +  +
Sbjct: 184 EVSSQAYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSAKCL 239

Query: 246 IYADDAYSKEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIH----------NKQQVTI 293
           I A+     +V    +A      +     +G  I L     I           ++ +  +
Sbjct: 240 INAETEKFTDVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFEL 299

Query: 294 SVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   +       D  +   +PG++   NA+ A       G  +   +E L  +H + GR 
Sbjct: 300 TALTEKAKQLNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVH-IRGRM 358

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E + +N+ G  IYVDYAH   SL+ +L    R   +G++ VV G  GD+   +RP  GK 
Sbjct: 359 EMINSNTHG-TIYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKA 417

Query: 406 A-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQ 459
              +  D  I+T D+P  EDP  I  EI   I     K      +R  AI+ AI+     
Sbjct: 418 LTEEQPDEVILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSGND 477

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           D++V+AGKG +    +   +     D  I R+ + 
Sbjct: 478 DIVVLAGKGEDPYQKINGEDVPYLTDVKIARDYIN 512


>gi|184156310|ref|YP_001844650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227654|dbj|BAG28170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- lysine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 518

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 129/508 (25%), Positives = 214/508 (42%), Gaps = 47/508 (9%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L +    +R+     V  +S+ +Q+  +F    G       ++ +AI +GA A V   +
Sbjct: 24  GLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQS 81

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQ 134
           Y         ++    L+V N ++ ++L ++  YG    ++ A+  TGT GK+S A F  
Sbjct: 82  Y---------QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAA 132

Query: 135 QICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                       +  T   S        ++LTTP  + L + L      G+TH+ +E SS
Sbjct: 133 TALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSS 192

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 R+  +    G F N+  DH+    H     Y   K    E+LL   S  ++   
Sbjct: 193 QSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCK----EQLLLNSSVCVLNTQ 248

Query: 250 DAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK-- 298
             + +EV + A    A  ++   G  G    L     I        N Q   +S  G   
Sbjct: 249 MDHFEEVYQAAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSAL 308

Query: 299 --DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D ++   + G++ V NA  AA      G+    + E   ++H + GR E + T   G 
Sbjct: 309 MLDGEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVH-IAGRMEVIRTQEHG- 366

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
            +YVDYAH   S++ +L  ++         +I VV G  G++   +RP +GK  A +  +
Sbjct: 367 TVYVDYAHDYASVKRLLAFLKDQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVN 426

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T D+P  EDP+ I AEI   I            +R EAI TAI+     D++V+AG
Sbjct: 427 RVILTTDDPAFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAG 486

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   +     D  + R+++ 
Sbjct: 487 KGTDQYQKVAGVDTPYPGDIAVARQVVA 514


>gi|317014909|gb|ADU82345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Gambia94/24]
          Length = 447

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 108/433 (24%), Positives = 194/433 (44%), Gaps = 28/433 (6%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +   +      +      L+ +     L     + Y      I+ +TGT+GK++ AS
Sbjct: 24  VLENPEEILFVKTPLNEKYAPLIAEKNLAILDSNELKNYFDFKIKIVGITGTNGKTTTAS 83

Query: 132 FVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  +       +  +G      +    ++  LTTP+ + L   L         +  +E 
Sbjct: 84  LMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLELYSDLEEAMRLKCEYFIMEV 143

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPA 244
           SSH + Q R+ G+       TN+  DH+D+H++ + Y +AK   F++     +   E+ A
Sbjct: 144 SSHAIAQKRIAGLDFALKILTNITSDHLDFHKSLENYRDAKNSFFKDEGLKVINRDETNA 203

Query: 245 IIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +    +A +  + K+AH N     L+        + + +   + K+   I          
Sbjct: 204 LFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDPNLKETALIHSP------- 256

Query: 304 FPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             L G + +YN L    G+ +   +    +   LE  + V GR E V +      + VD+
Sbjct: 257 --LLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSK---PLVVVDF 311

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP MG IA   A   I+T DNPRS
Sbjct: 312 AHTTDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKMGAIASCYAHQIILTSDNPRS 368

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ GKG E   I  +  
Sbjct: 369 ENEEDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEVLLILGKGDENTQIFKDKT 428

Query: 480 KKMSVDCDIIREI 492
                D +++++ 
Sbjct: 429 I-FFSDQEVVKDY 440


>gi|218661064|ref|ZP_03516994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli IE4771]
          Length = 278

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 133/274 (48%), Positives = 178/274 (64%), Gaps = 1/274 (0%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T +AY  AKMRLF+ LLPK +PA+I+ADD +S + +K A +AG  V +VG +G ++ L
Sbjct: 1   HPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTL 60

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K+V    +KQ   I +  + F+   PL G+FQV NALVAAGL ++ G++  + +  LEKL
Sbjct: 61  KRVEHFRHKQMAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMTALEKL 120

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR E VG    G   YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKR
Sbjct: 121 VGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKR 180

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           PIMG+IA  LAD+ IVTDDNPRSE+P  IRAEI+   P   E  +R  AIR A+ ML   
Sbjct: 181 PIMGEIACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCASEIADRAIAIREAVAMLTSG 240

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D L+VAGKGHE    + +       D   +R+ L
Sbjct: 241 DTLIVAGKGHEEGQTIGSVTLP-FSDHAEVRKAL 273


>gi|317181177|dbj|BAJ58963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F32]
          Length = 447

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 103/391 (26%), Positives = 185/391 (47%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYGDLEEAMRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLNPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    ++  LE  + V
Sbjct: 244 DPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V +      + VD+AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHSK---PLVVVDFAHTTDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G +A   A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GAMASCYAHQIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++++
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|255280636|ref|ZP_05345191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255268573|gb|EET61778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 500

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 116/516 (22%), Positives = 220/516 (42%), Gaps = 46/516 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +   D   ++ +  +     +  +   +  V+ DSR +  G +F+        G  F+P+
Sbjct: 2   ITTHDVERILREQGLLCRADKNEEAAPVTWVTCDSREVIPGTLFIC------KGAEFLPE 55

Query: 63  ----AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
               A+A G  A +    +                VV + R+ +++ ++  +   PE   
Sbjct: 56  YLLEAVAYGCIAYMSEERWG-------TPKTVRGFVVKDIRRAMAVVSAAFFEYEPEALK 108

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQ--IGPTSTISSFAQDNR----LTTPSPIYL 170
           +  +TGT GK++ A +++ +         +   G  S++ +F  + R    +TTP    L
Sbjct: 109 LTGITGTKGKTTTAWYLRAMLDEWQQEKGKKKTGLISSVENFDGNCRSDAVMTTPEAPVL 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFN 228
            + ++ + + G  ++++E SS  L  HR+DG+    G F N+  DHI    H+  + YF 
Sbjct: 169 YELIARVRAAGSEYMTIETSSQALKYHRVDGLHFQVGIFLNISEDHISPGEHRDFEDYFQ 228

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K+ L  +       A +  D  Y+++++K A  A  RV++ G   +     ++    + 
Sbjct: 229 SKLSLLRQC----GTACVNLDSDYAQQILKEARKAQ-RVVTFGQHHEAQLRYRILPEKDG 283

Query: 289 -QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q   ++       F   + G F + NA+ A       G+    + + L +   VPGR E
Sbjct: 284 KQTFEVTCPQFTEQFSLKMRGSFNIENAVAAIAAAQVYGVPVHCMQKALAE-TTVPGRME 342

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKI 405
              +  +     VDYAH   S + + + +        RII VFGC G +   +R  +G +
Sbjct: 343 VFESGDKKVCAIVDYAHNQLSFQKLFQTVFQEYRSFHRIITVFGCPGGKALNRRRELGVL 402

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQ-- 459
           A   +D   VT D+P  ED  +I  E+   +           +R  AIR+A+E       
Sbjct: 403 AGMFSDYVYVTSDDPGMEDESRIADEVGSYVEMAGGACDCIADRRIAIRSALEKAGSGTE 462

Query: 460 -DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +++V G+G E    +         D +I+RE++ 
Sbjct: 463 KTLVLVLGRGSEKFQRIGRRLYAYPTDANIVRELMA 498


>gi|308064254|gb|ADO06141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Sat464]
          Length = 447

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 102/391 (26%), Positives = 183/391 (46%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
               K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPDLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G++A   A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E+  I  +       D ++++
Sbjct: 409 EVLLILGKGDESTQIFKDKTI-FFSDQEVVK 438


>gi|322379099|ref|ZP_08053501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter suis HS1]
 gi|321148471|gb|EFX42969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter suis HS1]
          Length = 446

 Score =  246 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 116/478 (24%), Positives = 192/478 (40%), Gaps = 63/478 (13%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +S D+R +    + V           F+ Q +                         
Sbjct: 13  FTHLSDDTRELDQDTLLVQTP-TNT---RFVQQYLQ---------------------EHR 47

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +     +K+               I+ +TGT+GK++ AS +  +    G S   +G 
Sbjct: 48  VPCIHAKELKKYF---------NTDVRIIGITGTNGKTTTASLIYSLLLDLGYSCALLGT 98

Query: 150 TSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                + +      LTTPS + +   +   +++G  +  +E SSH ++Q R+ G+   A 
Sbjct: 99  RGFFFNDSCLKQKGLTTPSLLEVYANIEQATNRGAHYFVMEVSSHAINQERILGLDFSAK 158

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA------H 261
             TN+  DH+DYH   + Y   K       L  ES  II  DDA+ +   K A      H
Sbjct: 159 VITNITSDHLDYHGNLEEYRRVK----NAFLSDESLKIINRDDAFVRFNPKNAYGYAIEH 214

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V +   QG   H+         Q        ++     PL G   +YN L     
Sbjct: 215 KTHLSVNAYSLQGLSAHICFTEKPGRYQNSEF----EEGLLYSPLVGRHNLYNLLAGILC 270

Query: 322 CIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              +       + + +     V GR E V        + VD+AHT++  E I     +  
Sbjct: 271 VKLLTKKSLKTLCDLIPHFLGVKGRMEVVHEQ---PLVIVDFAHTADGFEQIFN---SFK 324

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
           + +I  +FG GG+RD+ KRP+MG IA   A    +T DNPR E+P  I  +I+ GI    
Sbjct: 325 TRKIKALFGAGGNRDKSKRPLMGAIACKYASKVYITSDNPRYEEPMAIMQDILVGIAVEK 384

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               I + +R +AI  A++ L   ++L++ GKG E+V I+ +       D ++++   
Sbjct: 385 RDKVILEIDRYKAICLALQELKSDEILLILGKGDESVQIIGDKTIP-FDDTEVVKTYF 441


>gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 513

 Score =  246 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 106/461 (22%), Positives = 194/461 (42%), Gaps = 41/461 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  V+SDSR ++ G++FVAI G + DG+ +I +AI +GA  I      +         
Sbjct: 25  VEVQGVTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGAVIIYTEHRIT--------A 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
               I +  N RK L+   +  Y    E I  + +TGT+GK++ +  +    + SG+S  
Sbjct: 77  LGVMIKICSNARKTLADLCNAFYDHPSEKIRVIGITGTNGKTTTSHIIYHALKESGVSVG 136

Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     I++      LTTPS   +   L+ +  Q V  V +E SSHGL   R+ GIK 
Sbjct: 137 LIGTLDIKINNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVMEVSSHGLKSERVHGIKF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+ RDH++YH+    Y  +K +LF+ L P    A++  DD +S E++    N G
Sbjct: 197 DIAIHTNIERDHLNYHKNMGDYIRSKKKLFDCLSP-GKVALLNLDDNHSLELL--TGNNG 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------------DFDFLFPLPGEFQV 312
             V++ G   +                   ++              ++ F   L G+  +
Sbjct: 254 LIVVTYGLNVRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPFEYPFSINLLGKHNI 313

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN+L A   C+ + +    + ++++    V  R E +    +G  +  D++H   S   +
Sbjct: 314 YNSLAAITCCLLLDLSCEEIAKNIKSFTGVTRRLEVI--YKKGYTVIDDFSHNPASYGAV 371

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-----AIVTDDNPRS----- 422
            ++++ +    + V+    G R          +     ++      ++T    ++     
Sbjct: 372 FESMQNLEYKNLHVINAIRGSRGADINQENADVLKIWYELLGMKTLMITSSKDKTGKLDE 431

Query: 423 ---EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
              E+       +  G   F    +  +AI T I  + + D
Sbjct: 432 VQVEEIGAFFKVLSEGSVNFEYVDHLSDAIETIIPRIEEGD 472


>gi|116512675|ref|YP_811582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|123125372|sp|Q02X53|MURE_LACLS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116108329|gb|ABJ73469.1| UDP-N-acetylmuramyl tripeptide synthase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 483

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 118/510 (23%), Positives = 216/510 (42%), Gaps = 45/510 (8%)

Query: 1   MKLQ---DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           +KL+   +++ KD  F E+ +    +    +E   +++S DSR      +F A  G    
Sbjct: 2   IKLEQVVEILKKDNNFREISSAGEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFK 60

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              ++   +   A   V    Y +           P ++V + ++ ++L A+  Y K P+
Sbjct: 61  -KEYLTD-LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAANFY-KFPQ 106

Query: 116 ---NILAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTST--ISSFAQDNRLTTPSPIY 169
                LA+TGT GK++ A F + I  +  G  +  +    T         + LTTP  + 
Sbjct: 107 NKLKTLALTGTKGKTTSAYFAKSILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLD 166

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYF 227
           L + ++     G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF
Sbjct: 167 LLEMMAKALENGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYF 226

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K     +LL      +  A+  +   + +  +         G   +   ++       
Sbjct: 227 YCK----RQLLKNSRYFVANAEMNHFAIIKEELNERKIPHAFYGADSENKIIE------- 275

Query: 288 KQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            + +    +G    +F   L G F   NAL  A    A+G     + + L     VPGR 
Sbjct: 276 SKGLHFVTDGSVSGEFDIRLLGRFNQENALATALATKALGASFENIRQGLASAI-VPGRM 334

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E + T   G  IY+DYAH   SLE +++ +    +G++ +V G  G++ + +R   G++ 
Sbjct: 335 ELL-TAKNGAHIYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVI 393

Query: 407 LDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLV 463
            +   +  I+T D+   E+P+ I  EI   +   ++ + +R  AI+ AI       D ++
Sbjct: 394 ENHPRLNVILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVI 453

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKG +   +     +    D    ++ L
Sbjct: 454 IAGKGADMFQLKDGKREPYIGDSPAAQKYL 483


>gi|297380651|gb|ADI35538.1| UDP-N-acetylmuramyl-tripeptide synthetase [Helicobacter pylori
           v225d]
          Length = 447

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 102/393 (25%), Positives = 184/393 (46%), Gaps = 28/393 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E + +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEILHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G+IA   A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEIASYYAHKIILTSDNPRSENEEYIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +VL++ GKG E   I  +       D +++++ 
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVKDY 440


>gi|260662527|ref|ZP_05863422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
 gi|260553218|gb|EEX26161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
          Length = 516

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 128/508 (25%), Positives = 213/508 (41%), Gaps = 47/508 (9%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L +    +R+     V  +S+ +Q+  +F    G       ++ +AI +GA A V   +
Sbjct: 22  GLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQS 79

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQ 134
           Y         ++    L+V N ++ ++L ++  YG    ++ A+  TGT GK+S A F  
Sbjct: 80  Y---------QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAA 130

Query: 135 QICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                       +  T   S        ++LTTP  + L + L      G+TH+ +E SS
Sbjct: 131 TALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSS 190

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 R+  +    G F N+  DH+    H     Y   K    E+LL   S  ++   
Sbjct: 191 QSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCK----EQLLLNSSVCVLNTQ 246

Query: 250 DAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK-- 298
             + +EV + A    A  ++   G       L     I        N Q   +S  G   
Sbjct: 247 MDHFEEVYQAAKVSTAPDKIYLFGEASSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSAL 306

Query: 299 --DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D ++   + G++ V NA  AA      G+    + E   ++H + GR E + T   G 
Sbjct: 307 MLDGEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVH-IAGRMEVIRTQEHG- 364

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
            +YVDYAH   S++ +L  ++         +I VV G  G++   +RP +GK  A +  +
Sbjct: 365 TVYVDYAHDYASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVN 424

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+T D+P  EDP+ I AEI   I            +R EAI TAI+     D++V+AG
Sbjct: 425 RVILTTDDPAFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAG 484

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG +    V   +     D  + R+++ 
Sbjct: 485 KGTDQYQKVAGVDTPYPGDIAVARQVVA 512


>gi|317011629|gb|ADU85376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori SouthAfrica7]
          Length = 447

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 182/393 (46%), Gaps = 28/393 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIIGITGTNGKTTTASLMYSLLLDLNKKAALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLECEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHKSLENYRDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A +  + K+AH N     L+        +   + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 DPNVKETALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V        + VD+AHT++ ++ + ++ ++     I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHPK---PLVVVDFAHTTDGMQQVFESFKSQK---ITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   
Sbjct: 349 GAIASYYAHKIILTSDNPRSENEEDIIKDILKGINDLSKVITEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +VL++ GKG E + I  +       D +++++ 
Sbjct: 409 EVLLILGKGDENIQIFKDKTI-FFSDQEVVKDY 440


>gi|15646103|ref|NP_208285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 26695]
 gi|8134572|sp|O26027|MURE_HELPY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2314673|gb|AAD08535.1| UDP-MurNac-tripeptide synthetase (murE) [Helicobacter pylori 26695]
          Length = 447

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 108/431 (25%), Positives = 195/431 (45%), Gaps = 28/431 (6%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +   +      +      L+ +     L     + Y      I+ +TGT+GK++ AS
Sbjct: 24  VLENPKEILFVKTPLNEKYSHLIAEKNLAILDFNELKNYFDFKIKIVGITGTNGKTTTAS 83

Query: 132 FVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  +       +  +G      +    ++  LTTP+ + L   L         +  +E 
Sbjct: 84  LMYSLLLDLNKKTALLGTRGFFINNERIKEKGLTTPTLLELYSDLEEAVRLKCEYFIMEV 143

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPA 244
           SSH + Q R+ G+       TN+  DH+D+HQ+ + Y +AK   F++     +   E+ A
Sbjct: 144 SSHAIVQKRIAGLDFALKILTNITSDHLDFHQSIENYRDAKNSFFKDEGLKVINRDETNA 203

Query: 245 IIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +    +A++  + K+AH N     L+        + + +   + K+   +          
Sbjct: 204 LFNPVNAHTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDPNFKEIALMHSP------- 256

Query: 304 FPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             L G + +YN L    G+ +   +    ++  LE  + V GR E V +      + VD+
Sbjct: 257 --LLGRYNLYNILAGVLGVKLLTQLPLETIVPLLENFYGVKGRLEIVHSK---PLVVVDF 311

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + ++ + +   +  + +I  +FG GGDRD+ KRP MG IA   A   I+T DNPRS
Sbjct: 312 AHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPEMGAIASYYAHKIILTSDNPRS 368

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ GKG E + I  +  
Sbjct: 369 ENEEDIIKDILKGINDSSKVIVEKDRKKAILNALENLKDDEVLLILGKGDENIQIFKDKT 428

Query: 480 KKMSVDCDIIR 490
                D ++++
Sbjct: 429 I-FFSDQEVVK 438


>gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 514

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/493 (21%), Positives = 199/493 (40%), Gaps = 42/493 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ LI  D  E +   +         +I+ V   S+ ++   +FVAI G + DGH FI
Sbjct: 1   MKLKTLI--DSIEYLEIKNGDEKTLESVEISSVEFHSKKVKKRTLFVAIKGYRVDGHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+A GA A +V            +  +   + V N+R  L+  AS  +G+  + +   
Sbjct: 59  KDAVASGAVAAIVED---------FVEEDILQIKVKNSRIALAKVASIFFGEPSKKLKVT 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +T ++GK+S A   + I  ++G ++   G   T  +     + LTTP    L      +
Sbjct: 110 GITASNGKTSTAFMTKCIYDKAGYNTGISGTVYTKYADVEIPSILTTPESKDLQYYFYDM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G+ HV +E SS   +  R         +F N+  +HI  H + + Y++ K RL    
Sbjct: 170 VNKGIDHVIMEVSSSAGELARAYATDFDIVTFNNITPEHIVNHGSFERYYHVKSRLIRH- 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---- 293
              +  AI+ +D     ++ +    A     S+    + I +  +       +       
Sbjct: 229 AKDDCVAILNSDFELINDL-RNNTKAQVVTYSLKNNLEDISIDNLDLSTGFGKFKFIVNR 287

Query: 294 -------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                  +++ + FD    + G   V NA+VA  + +  GID   +L  ++    V  RF
Sbjct: 288 DIKLKGITIKKQSFDVELKVAGYSSVMNAIVAITIGLVNGIDLDTILAGIQDFTGVERRF 347

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +     G +I  D+    N++E+ L  +  +    + +++   G R         ++ 
Sbjct: 348 EVIF--DEGFKIVDDHFANKNNIEVTLDTLSKMDYKNLDILYAIRGSRGADLNEENAEVI 405

Query: 407 LDLADIA------------IVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
               +               VT  +  ++D  E  +  +      F+ + N  EA+   I
Sbjct: 406 ASWYERLKPREFIVTLSKDTVTWKDEVTDDELEAFKRVMSKHNIKFVLEDNLKEAVEKVI 465

Query: 454 EMLNKQDVLVVAG 466
           +     D+++ AG
Sbjct: 466 DGTKDDDLVLFAG 478


>gi|317178199|dbj|BAJ55988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F16]
          Length = 447

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 102/391 (26%), Positives = 183/391 (46%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +  Q  +  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTAFLGTRGFFINDKQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E + +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEILHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G+IA   A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEIASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++++
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|255994449|ref|ZP_05427584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
 gi|255993162|gb|EEU03251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
          Length = 505

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 127/492 (25%), Positives = 211/492 (42%), Gaps = 46/492 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            ++ ++ DS+ +  G +FV   G       ++ +AI +GA   V    Y +         
Sbjct: 25  DVSNIAYDSKKVSNGTLFVC-KGAAFK-KQYLEEAIEKGACCYVSEDCYDV--------- 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR----SGL 142
           N P + V + RK +++ A R Y      +  + +TGT GK++ A +++ I       SG 
Sbjct: 74  NIPQIRVGDIRKAMAVIAGRFYDHPDRKLTLIGITGTKGKTTTAYYIKAILDTFLLNSGK 133

Query: 143 SSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
               I  G  +      +++ LTTP    L + LS  +  G+ ++ +E SS  L  HR  
Sbjct: 134 KPAGILSGIFNYYGKDYEESSLTTPETFELFEKLSNAAENGLEYLVMEVSSQALKYHRTY 193

Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+      + NL  DHI    H   + Y  +K+ LF+        A++  D  + ++ + 
Sbjct: 194 GLMFDFAGYLNLDEDHISPGEHSDFEDYKASKLLLFKAC----DVAVLNKDSEHYEDFLN 249

Query: 259 RAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLP 307
              +A  +V+S   +G         + A +   +  I       D         F     
Sbjct: 250 ECVDAK-KVISFSSKGLDADYRACDINAKNGVLEFNIVYHDASRDTDEPVRKSNFTILSS 308

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTS 366
           GEF + NAL+A  +   + +    + E L  +  VPGR E V   SRGGRI  VD+AH  
Sbjct: 309 GEFNIDNALLATSIGSELNVPYEDMKEALYNVK-VPGRMEVV--KSRGGRIAIVDFAHNK 365

Query: 367 NSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            S   + +   +     +I +VFG  G +   +R +MG IA   AD   +T+D+P  E  
Sbjct: 366 LSFIKLFEAVKKEYPDKKIAIVFGTPGGKAYDRRALMGMIAAKNADKVYITEDDPYREKA 425

Query: 426 EKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           E I  EI      +    +   NR +AI+ A E  + + ++++AGKG E       G   
Sbjct: 426 EDICEEIRAEAVKYSDDIVVVLNRQDAIKRAAEETDAEWIILIAGKGIENSIKRKEGWVP 485

Query: 482 MSVDCDIIREIL 493
           M  D   I  + 
Sbjct: 486 MEPDNKCIERVF 497


>gi|116492429|ref|YP_804164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102579|gb|ABJ67722.1| UDP-N-acetylmuramyl tripeptide synthase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 507

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/492 (24%), Positives = 204/492 (41%), Gaps = 49/492 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S DSR ++ G++F    GN +    ++  A   GA   V  + Y          +  
Sbjct: 30  TGISYDSRTVKPGYMFFC-KGNFKP--EYLSVARQNGATTYVSENEYPE-------GTGM 79

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++V N  + +++ ++  Y   P+N   I+ +TGT GK+S A F   I  +      Q+
Sbjct: 80  TAIIVTNVTRAMAVLSATYY-NFPQNDLFIIGITGTKGKTSSAYFAHSILNQ--KYPNQV 136

Query: 148 GPTSTISSFAQDNRLTT-------PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              STI                  P  + L   +      G+ ++ +E SS    + R+ 
Sbjct: 137 ALFSTIDRIVGPKPEDQFKSDLTTPESMNLFHDMRVAVDNGMKYLVMEVSSQAYLRDRVY 196

Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           G+K   G F N+  DHI    H+  + Y + K+    +L+      II AD     +V  
Sbjct: 197 GLKFDCGIFLNITPDHIGRNEHKDFEDYLHCKL----QLMVNSKRCIIDADTDRFDDVFG 252

Query: 259 RAHNAGCRVLSVGYQGK------FIHLKKVCAIHNKQQVTI-------SVEGKDFDFLFP 305
            A           +            ++         + T+              D+   
Sbjct: 253 AAKATTDPEQIYLFSADVENGGVDFLIQDEEDDLTSNRFTLVESSSKAEAFHVAGDYDLN 312

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G++   NA  A        +     +  L+ + V+PGR E +     G  ++VDYAH 
Sbjct: 313 VAGDYNQSNATAAIIAAALADVTYQDAVLPLKSI-VIPGRMEHLNVPGHG-VVFVDYAHN 370

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             SL  +LK ++     G++IVV G  GD+   +R   G+   + ADIA +T D+P  ED
Sbjct: 371 YASLHALLKFLKHQYHDGKVIVVVGSPGDKGISRRAGFGQALSEQADIAYLTTDDPAFED 430

Query: 425 PEKIRAEIIHGI-PGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           PE+I  +I+  I PG +E     +R +AI  AI   +++DV+V+AGKG +    V   + 
Sbjct: 431 PEQIIQQIMDNIKPGTVEVRQVLDRHDAIEQAIMNSSEKDVVVLAGKGEDPYQKVGGVDT 490

Query: 481 KMSVDCDIIREI 492
               D  +  E+
Sbjct: 491 PWPTDMGVAEEV 502


>gi|188528265|ref|YP_001910952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Shi470]
 gi|188144505|gb|ACD48922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Shi470]
          Length = 447

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 103/391 (26%), Positives = 184/391 (47%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +  Q  +  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ ++    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V +      + VD+AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHSK---PLVIVDFAHTTDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G++A   A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++I+
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVIK 438


>gi|261840170|gb|ACX99935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 52]
          Length = 447

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/391 (25%), Positives = 183/391 (46%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYRDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPFISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 DPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E + +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEILHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G++A   A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++++
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|257483452|ref|ZP_05637493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 295

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/291 (32%), Positives = 142/291 (48%), Gaps = 7/291 (2%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TNL RDH+DYH T +AY  AK +LF          +I  DDA+ +E+      +   
Sbjct: 2   AVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAFGRELAGIKQESRLI 59

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S      +++ +      +  + T+     +      L G F + N L A G  + + 
Sbjct: 60  TYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALLGLD 119

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                +L+ L KL    GR + +G  +    + VDYAHT ++LE +L+ +R    GR++ 
Sbjct: 120 YALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKGRLLC 178

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KG 443
           +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I  G     +     
Sbjct: 179 LFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDIRPGFTAVDKVRFIE 238

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            R +AI   I   +  DV+V+AGKGHE    + +G++    D     + L 
Sbjct: 239 GRGQAIAELIASASADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEAAKALA 288


>gi|210135661|ref|YP_002302100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori P12]
 gi|210133629|gb|ACJ08620.1| UDP-murnac-tripeptide synthetase [Helicobacter pylori P12]
          Length = 447

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/410 (25%), Positives = 191/410 (46%), Gaps = 28/410 (6%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+ +     L     + Y      I+ +TGT+GK++ AS +  +       +  +G    
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 153 ISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +    ++  LTTP+ + L   L      G  +  +E SSH + Q R+ G+       T
Sbjct: 105 FINDERIKEKGLTTPTLLELYSDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAG 264
           N+  DH+D+HQ  + Y +AK   F +     +   E+ A+    + ++  + K+AH N  
Sbjct: 165 NITSDHLDFHQNIENYRDAKNSFFRDDGLKVINRDETNALFNPINVHTYALDKKAHLNVQ 224

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCI 323
              L+        + + +   + K+   +            L G + +YN L    G+ +
Sbjct: 225 AFSLTPFISASLCYQQDLRDPNLKEIALMHSP---------LLGRYNLYNILAGVLGVKL 275

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +    ++  LE  + V GR E V +      + VD+AHT++ ++ + +   +  + +
Sbjct: 276 LTQLPLEAIVPLLENFYGVKGRLEIVHSK---PLVVVDFAHTTDGMQQVFE---SFKNQK 329

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           I  +FG GGDRD+ KRP MG++A   A   I+T DNPRSE+ E I  +I+ GI      I
Sbjct: 330 ITALFGAGGDRDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVI 389

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            + +R +AI  A+E L   +VL++ GKG E++ I  +       D ++++
Sbjct: 390 IEKDRKKAILNALENLKDDEVLLILGKGDESIQIFKDKTI-FFSDQEVVK 438


>gi|281492399|ref|YP_003354379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376063|gb|ADA65554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 483

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 115/502 (22%), Positives = 211/502 (42%), Gaps = 40/502 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ KD  F E+ +    +    +E   +++S DSR      +F A  G       ++  
Sbjct: 9   EILKKDNNFREISSAGEYYFNWLKEVNFDQLSYDSRKSTENTLFFA-KGLNFK-KEYLTD 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
            +   A   V    Y +           P ++V + ++ ++L A+  Y      +  LA+
Sbjct: 67  -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAASFYDFPQNKLKTLAL 114

Query: 121 TGTSGKSSVASFVQQICQRS-GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++ A F + I  +  G  +  +    T         + LTTP  + L + ++  
Sbjct: 115 TGTKGKTTSAYFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K     
Sbjct: 175 LTTGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCK----R 230

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +LL      +  ++  +   + +            G   +   ++        + +    
Sbjct: 231 QLLKNSRYFVANSEMNHFAIIKEELKERKIPHAFYGADSENKIIE-------SKGLHFVT 283

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G     F   L G F   NAL  A    A+G     + + L  L VVPGR E + T   
Sbjct: 284 DGSVSGAFDIRLLGRFNQENALATALATKALGASLENIHDGLA-LAVVPGRMELL-TAKN 341

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-A 413
           G  IY+DYAH   SLE +++ +    +G++++V G  G++ + +R   G++      +  
Sbjct: 342 GAHIYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVIEKHPRLDV 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNK-QDVLVVAGKGHET 471
           I+T D+   EDP+ I  EI   +   ++ + +R  AI+ A+       D +++AGKG + 
Sbjct: 402 ILTTDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKGTDM 461

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             +     +    D    ++ L
Sbjct: 462 FQLKDGKRQPYIGDAAAAQKYL 483


>gi|332674264|gb|AEE71081.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pylori 83]
          Length = 447

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 101/391 (25%), Positives = 183/391 (46%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYNDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E + +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEILHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G+IA   A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEIASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++++
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|317182699|dbj|BAJ60483.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F57]
          Length = 447

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 102/391 (26%), Positives = 183/391 (46%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +  Q  +  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E + +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEILHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G+IA   A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEIASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++++
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|125624766|ref|YP_001033249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|166224780|sp|A2RMM5|MURE_LACLM RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|124493574|emb|CAL98559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071566|gb|ADJ60966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 483

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 116/509 (22%), Positives = 214/509 (42%), Gaps = 43/509 (8%)

Query: 1   MKLQ---DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           +KL+   +++ KD  F E+ +    +    +E   +++S DSR      +F A  G    
Sbjct: 2   IKLEQVVEILKKDNNFREISSAGEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFK 60

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              ++   +   A   V    Y +           P ++V + ++ ++L A+  Y     
Sbjct: 61  -KEYLTD-LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAANFYEFPQN 107

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTST--ISSFAQDNRLTTPSPIYL 170
            +  LA+TGT GK++ A F + I  +  G  +  +    T         + LTTP  + L
Sbjct: 108 KLKTLALTGTKGKTTSAYFAKAILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDL 167

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228
            + ++     G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF 
Sbjct: 168 LEMMAKALENGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFY 227

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K     +LL      +  A+  +   + +  +         G   +   ++        
Sbjct: 228 CK----RQLLKNSRYFVANAEMNHFAIIKEELNERKIPHAFYGADSENKIIE-------S 276

Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +    +G    +F   L G F   NAL  A    A+G     + + L     VPGR E
Sbjct: 277 KGLHFVTDGSVSGEFDIRLLGRFNQENALATALATKALGASFENIRQGLASAI-VPGRME 335

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            + T   G  IY+DYAH   SLE +++ +    +G++ +V G  G++ + +R   G++  
Sbjct: 336 LL-TAKNGAHIYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIE 394

Query: 408 DLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVV 464
           +   +  I+T D+   E+P+ I  EI   +   ++ + +R  AI+ AI       D +++
Sbjct: 395 NHPRLNVILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVII 454

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKG +   +     +    D    ++ L
Sbjct: 455 AGKGADMFQLKDGKREPYIGDSPAAQKYL 483


>gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
 gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
          Length = 463

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/486 (18%), Positives = 185/486 (38%), Gaps = 50/486 (10%)

Query: 1   MKLQDLIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK++++I +   ++ + +       ++ +  +  VS+D+R IQ G ++V + G K +GH 
Sbjct: 1   MKVKEMITRTLRDIQSMVDGRGLANEFFDITVYGVSTDTRTIQQGNLYVPLKGAKFNGHA 60

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F+  AI +GA A++ +      +   T   + P+++VD+T + L   A R   +    ++
Sbjct: 61  FVQDAIDKGASAVLWA------ETEGTPPKDVPVIIVDDTLRALQRLAHRYRKQLSVKVI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK++    +  +             T  +     +       P+ L   L    
Sbjct: 115 GITGSNGKTTTKDMIAALLA----------TTYKVQKTEGNLNNHIGVPLTL---LRLEE 161

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +  V +  S+ G  +   +  +  A   TN+G  H+    +++    AK+ +   L 
Sbjct: 162 DTEMAVVEMGMSNFGEIELLSNIAEPDAAVITNIGESHLQELGSREGIAQAKLEILSGL- 220

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            K    + + D+     ++ R  +      VL  G      +  K   +          +
Sbjct: 221 KKNGLFVYHGDEPL---LVNRVPDLPLPEHVLRFGQGSDNDYYPKAVHVQANGTTFTVHQ 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  F  P+ G+  VYNAL A  +     +    + E   +L V   R E + T     
Sbjct: 278 APNRSFFLPILGKHHVYNALAAIAVARFFHVSWEKIQEAFSQLQVTRMRMELIETKKGWT 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLAD 411
            I   Y     S++  L+ +  +T     +     +   G    +  R I   +  ++ D
Sbjct: 338 IINDAYNANPTSMKAALQLLHELTGYEKKIAVLGDMLELGDQEVEFHREIGAMLRPEMVD 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV 464
                           +   I      F   G R++A        +  + +++  DV+++
Sbjct: 398 YVF---------TYGALARHIALAAQPFFPDG-RVKAYEDKQSLAKDLLAVVSSGDVILL 447

Query: 465 -AGKGH 469
            A +G 
Sbjct: 448 KASRGM 453


>gi|315585881|gb|ADU40262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Helicobacter pylori 35A]
          Length = 447

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 100/391 (25%), Positives = 183/391 (46%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E + +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEILHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G++A   A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEVASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++++
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|109948221|ref|YP_665449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter acinonychis str. Sheeba]
 gi|109715442|emb|CAK00450.1| murE [Helicobacter acinonychis str. Sheeba]
          Length = 447

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 182/393 (46%), Gaps = 28/393 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ VTGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIIGVTGTNGKTTTASLMYSLLLDLNKKAALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYGDLEEAMRLECEYFIMEVSSHAIVQERIAGLNFALKILTNITSDHLDFHKSIENYRDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLNPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   +            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNVKEMALMHSP---------LLGRYNLYNILAGVLGVKLLTQLPLETITPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E   +      + VD+AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIAHSK---PLVVVDFAHTTDGMQQVFE---SFKAQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   
Sbjct: 349 GAIASCYAHKIILTSDNPRSENEEDIIKDILKGINDPSKVIVEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +VL++ GKG E   I  +       D +I++  
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEIVKNY 440


>gi|308185264|ref|YP_003929397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Helicobacter pylori SJM180]
 gi|308061184|gb|ADO03080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Helicobacter pylori SJM180]
          Length = 447

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 105/393 (26%), Positives = 183/393 (46%), Gaps = 28/393 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y + 
Sbjct: 124 LYGDLEEAIRLGCEYFIMEVSSHAIIQKRIAGLDFALKILTNITSDHLDFHQNIENYRDT 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    + ++  + KRAH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINTHTYALDKRAHLNVQAFSLNPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 DPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V +      + VD+AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHSK---PLVVVDFAHTTDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   
Sbjct: 349 GAIASCYAHQIILTSDNPRSENEEDIIKDILKGINDSSKVIIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +VL++ GKG E + I  +       D +++++ 
Sbjct: 409 EVLLILGKGDENIQIFKDKTI-FFSDQEVVKDY 440


>gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
          Length = 450

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 100/404 (24%), Positives = 157/404 (38%), Gaps = 31/404 (7%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+N +L          +I EV+ D+R + AG +FVA+ G + DGH F   A+  GA 
Sbjct: 1   MSELLNAELIATDKGGNHLEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAVTAGAG 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++VS           +    P LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV
Sbjct: 61  ALLVSK---------RLLVGAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSV 111

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 I ++ G   +      T  +F  D  +           L          + + A
Sbjct: 112 KEMTAAILRQCGKVLY------TAGNFNNDIGVPL-------TLLRLTPEYDFAVIELGA 158

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G   +  D  +  +    NL   H++   +      AK  +F  L P    AII AD
Sbjct: 159 NHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGL-PANGTAIINAD 217

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                   +  HN   RV     Q       +   V         T+           PL
Sbjct: 218 SNDWPHWQETLHNK--RVWRFAPQAAEDIDFYATDVQITPQATHFTLHSPFGTVAIELPL 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + N L AA L +++G D A V + L +L  VPGR   +   +    +   Y    
Sbjct: 276 PGRHNIANGLAAAALAMSVGADLAAVRQGLMQLQAVPGRLFPIQLAAGKLLLDDTYNANV 335

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALD 408
            S+    + +  +   R++VV   G   D        +G+ A  
Sbjct: 336 GSMTAAAQVLAEMPGYRVMVVGDMGELGDTAIDCHRQVGEAAKQ 379


>gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium wasabiae WPP163]
          Length = 453

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/457 (21%), Positives = 167/457 (36%), Gaps = 47/457 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I +VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS          
Sbjct: 19  GENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P L+V +TR  L    + +  +    ++A+TG+SGK+SV      I ++ G   
Sbjct: 70  RLHIDVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +  D ++ 
Sbjct: 130 Y------TAGNFNNDIGVPL-------TLLRLTAEHQFAVIELGANHIGEIAYTTDLVRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F  L P +  AI+ AD         +     
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFSGL-PVDGVAIVNADSNDFPHW--QVTLNH 233

Query: 265 CRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             V     Q           V  +    + T+     D   L PLPG   V NAL A  L
Sbjct: 234 KTVWRFSPQAACNIDFFASDVAVLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATAL 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G     V   L +L  VPGR   +  +     +   Y     S+    + +  +  
Sbjct: 294 AMSVGATLEAVKAGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLADMPG 353

Query: 382 GRIIVVFGCGGDRDQGKRP-----IMGKIALDLADIAIVT------DDNPRSEDPEKIRA 430
            R++VV   G   D             ++A     +++ T        N   E      A
Sbjct: 354 YRVMVVGDMGELGDDAPECHRQVGEAARVAGIDCVLSVGTLSKLISQSNGNGEHFHDKAA 413

Query: 431 EI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            I         H +   + KG+R  A+   +  L + 
Sbjct: 414 LISRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQEN 450


>gi|125575608|gb|EAZ16892.1| hypothetical protein OsJ_32369 [Oryza sativa Japonica Group]
          Length = 770

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 117/529 (22%), Positives = 236/529 (44%), Gaps = 55/529 (10%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+     ++  +  V  D+  + AG ++V + G +  G   + +A  +G
Sbjct: 227 LAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKRG 283

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A A+V      ++   A       +++VD+    L +  + LY +  ++  ++ V GT G
Sbjct: 284 AVAVVADQTVDIEGTLA----CRALVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDG 339

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            ++ A  V+ + +  G+ +  +G     +   +        +  PI + + ++ +   G 
Sbjct: 340 VTTTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNGA 399

Query: 183 THVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240
               +EA++ G+    +D  I       TN+     +   T + Y N+   LF  ++ P+
Sbjct: 400 EAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDPE 459

Query: 241 ESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               ++  DD  +     +   +      S   +   +H  K      + +V +      
Sbjct: 460 RHRKVVNIDDPSAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGI 519

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G   +YN L +  + +A+G     +++ +E++  +PGR E +      G + 
Sbjct: 520 LEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFG-VI 578

Query: 360 VDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGKIA 406
           VD+A T  SL  +L  ++ +   RI+             VV GC G+R++GKRP+M K+A
Sbjct: 579 VDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTKVA 638

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---------------GNRI----- 446
            + +D+ ++T DNP +EDP  I  +++ G+   +E+               G+RI     
Sbjct: 639 AEKSDVVMLTSDNPANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLHDI 698

Query: 447 --EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              A+R A+ M  + DV+V+ GKG++T  I  + +K+   D +  RE L
Sbjct: 699 RRVAVRAAVAMGEQGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 746


>gi|15673788|ref|NP_267963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis Il1403]
 gi|13878593|sp|Q9CEN1|MURE_LACLA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|12724832|gb|AAK05904.1|AE006410_6 UDP-MurNac-tripeptide synthetase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407294|gb|ADZ64365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 483

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 115/502 (22%), Positives = 211/502 (42%), Gaps = 40/502 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ KD  F E+ +    +    +E   +++S DSR      +F A  G       ++  
Sbjct: 9   EILKKDNNFREISSAGEYYFNWPKEVNFDQLSYDSRKSTENTLFFA-KGLNFK-KEYLTD 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
            +   A   V    Y +           P ++V + ++ ++L A+  Y      +  LA+
Sbjct: 67  -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAASFYDFPQNKLKTLAL 114

Query: 121 TGTSGKSSVASFVQQICQRS-GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++ A F + I  +  G  +  +    T         + LTTP  + L + ++  
Sbjct: 115 TGTKGKTTSAYFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K     
Sbjct: 175 LTNGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCK----R 230

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +LL      +  ++  +   + +            G   +   ++        + +    
Sbjct: 231 QLLKNSRYFVANSEMNHFAIIKEELKERKIPHAFYGADSENKIIE-------SKGLHFVT 283

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G     F   L G F   NAL  A    A+G     + + L  L VVPGR E + T   
Sbjct: 284 DGSVSGAFDIRLLGRFNQENALATALATKALGASLENIHDGLA-LAVVPGRMELL-TAKN 341

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-A 413
           G  IY+DYAH   SLE +++ +    +G++++V G  G++ + +R   G++      +  
Sbjct: 342 GAHIYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVIEKHPRLDV 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNK-QDVLVVAGKGHET 471
           I+T D+   EDP+ I  EI   +   ++ + +R  AI+ A+       D +++AGKG + 
Sbjct: 402 ILTTDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKGTDM 461

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             +     +    D    ++ L
Sbjct: 462 FQLKDGKRQPYIGDTAAAQKYL 483


>gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 461

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 95/456 (20%), Positives = 182/456 (39%), Gaps = 36/456 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+  +S+DSR ++   +F+ + G K DG  F+  AI +GA A++ +    L +       
Sbjct: 25  KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAVITAR---LDNVECLKDF 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V+ T + L   AS    K     +AVTG+SGK++    + QI  +      +  
Sbjct: 82  SVNVIYVNETLEALHKIASYYIKKFNIPFIAVTGSSGKTTTKDMIAQILSK------KYK 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  +F                  +   +  +  V +  +  G  +   + +K     
Sbjct: 136 VLKTEGNF-------NNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIVKPQVAV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN+G  HI+   +++    AK  L E+   +E+  ++ ADD    ++  +  +   R  
Sbjct: 189 FTNIGVAHIEKLGSRENILKAKTELIEDF-KEENVIVLNADDDMLSKIPLQYSSKYYR-- 245

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G +   I    +       + T+  +  + +    +PG   VYN+L A  + +  GI+
Sbjct: 246 -YGIKSGEIKACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAICVGLEFGIN 304

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
              + E L+       R   +       +I  D Y    +S++  L  +R + + R I V
Sbjct: 305 VEDMAEALKDFQPGKMRLNII--EKGDIKIIDDVYNANPDSMKAALSVLRDLPAKRKIAV 362

Query: 388 FGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI----IHGIPGFI 440
            G     G+        +GK+  D     ++T  N      + I  E     + G   F+
Sbjct: 363 LGDMLELGEYAVEAHKEIGKLVADSHIDILITSGN----MSKYIAEESKVCGMKGNNIFV 418

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
              N  E      +++ + D ++V G +G +   IV
Sbjct: 419 CNTN-EEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453


>gi|212696049|ref|ZP_03304177.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676958|gb|EEB36565.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 371

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 107/382 (28%), Positives = 172/382 (45%), Gaps = 19/382 (4%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK++ A+ +  +  + G     IG     + +       TTP    L + L 
Sbjct: 1   MIGVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILI 60

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + + +  +E SSHGL   R  GI    G FTNL  +H+D+H+T   YF AKM L  
Sbjct: 61  EAKKENIKNAVMETSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAKMIL-- 118

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L      ++  DD Y K   +   +A    ++   + +  ++K+V        +  +V
Sbjct: 119 --LNNSKKQVVNLDDDYGKRAKEIFKDALTISINEDSKYRAKNIKRVDL-----GLEFTV 171

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G  F       G + +YN+L A  +   +G     + + LE    V  RFEF+  N  G
Sbjct: 172 NGVKFH--LNRFGHYDIYNSLCAIAIANDLGYKLEEISKALENFIGVKSRFEFI-ENKLG 228

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I VD+AHT  + E + K++      +I  V+G  GDR    R  +GKI+      +++
Sbjct: 229 INIVVDFAHTPEAFENLFKDLP--KDKKIYAVYGINGDRTYDIRKAVGKISAKYGVFSVI 286

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T D+P+ +  E I  +I  G+       I   +R EAI+  I    K D + + GKG E 
Sbjct: 287 TTDDPKFDTFENISQQIKEGVDENKGESIIIKDRKEAIKYGISHAKKGDFVFMLGKGEEK 346

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
                   K    + + IRE+L
Sbjct: 347 FLKFNANIKTYYNEKETIREVL 368


>gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 317

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/318 (29%), Positives = 142/318 (44%), Gaps = 9/318 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 5   NLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 60

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 61  AYEVEGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 120

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 121 AQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DD +
Sbjct: 181 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSDLKCRVINLDDDF 238

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 239 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 298

Query: 313 YNALVAAGLCIAIGIDSA 330
            N L A G  + +     
Sbjct: 299 SNVLAAVGALLGLDYALD 316


>gi|308183597|ref|YP_003927724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori PeCan4]
 gi|308065782|gb|ADO07674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori PeCan4]
          Length = 447

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/393 (26%), Positives = 184/393 (46%), Gaps = 28/393 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLALEEIASLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G IA   A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GAIASCYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +VL++ GKG E + I  +       D +++++ 
Sbjct: 409 EVLLILGKGDENIQIFKDKTI-FFSDQEVVKDY 440


>gi|254780004|ref|YP_003058111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori B38]
 gi|254001917|emb|CAX30170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Helicobacter pylori
           B38]
          Length = 447

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 106/393 (26%), Positives = 184/393 (46%), Gaps = 28/393 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +  Q  +  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDTQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYRDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A +  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLTPFISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   +            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 DPNLKEIALMHSP---------LLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V +      + VD+AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHSK---PLVVVDFAHTTDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   
Sbjct: 349 GAIASCYAHQIILTSDNPRSENEEDIIKDILKGISDSSKVIVEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +VL++ GKG E + I  +       D +I+R+ 
Sbjct: 409 EVLLILGKGDENIQIFKDKTI-FFSDQEIVRDY 440


>gi|261838768|gb|ACX98534.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori 51]
          Length = 447

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 100/391 (25%), Positives = 184/391 (47%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  NFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAVRLKCEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHESIENYRDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   +            L G + +YN L    G+ +   +    ++  LE  + V
Sbjct: 244 NPNFKEIALMHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E + +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEILHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G++A   A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEVASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL+V GKG E   I  +       D ++++
Sbjct: 409 EVLLVLGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|217033874|ref|ZP_03439298.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10]
 gi|216943637|gb|EEC23082.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10]
          Length = 447

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 102/391 (26%), Positives = 183/391 (46%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +  Q  +  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPTNAHTYALDKKAHLNIQAFSLNPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E + +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEILHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G++A   A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILDALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++++
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|308062758|gb|ADO04646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Cuz20]
          Length = 447

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 101/391 (25%), Positives = 184/391 (47%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ ++    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLALEAIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G++A   A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E+  I  +       D ++++
Sbjct: 409 EVLLILGKGDESTQIFKDKTI-FFSDQEVVK 438


>gi|317179671|dbj|BAJ57459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F30]
          Length = 447

 Score =  243 bits (619), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 100/391 (25%), Positives = 183/391 (46%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+ A+    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
             + K+   I            L G + +YN L    G+ +   +    +   LE  + V
Sbjct: 244 NPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLALETIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E + +      + VD+AHT + ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEILHSK---PLVIVDFAHTIDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459
           G++A   A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   
Sbjct: 349 GEVASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E   I  +       D ++++
Sbjct: 409 EVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|208435362|ref|YP_002267028.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27]
 gi|208433291|gb|ACI28162.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27]
          Length = 447

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 108/410 (26%), Positives = 188/410 (45%), Gaps = 28/410 (6%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+ +     L     + Y      I+ VTGT+GK++ AS +  +       +  +G    
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKIKIVGVTGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 153 ISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +    ++  LTTP+ + L   L         +  +E SSH + Q R+ G+       T
Sbjct: 105 FINDERIKEKGLTTPTLLELYSDLEEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAG 264
           N+  DH+D+HQ  + Y +AK   F++     +   E+ A+    +A +  + K+AH N  
Sbjct: 165 NITSDHLDFHQNIENYRDAKNSFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQ 224

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCI 323
              L+        + + +   + K+   +            L G + +YN L    G+ +
Sbjct: 225 AFSLTPSISASLCYQQDLRDPNLKEVALMHSP---------LLGRYNLYNILAGVLGVKL 275

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +    ++  LE  + V GR E V +      + VD+AHT++ ++ + +   +  + +
Sbjct: 276 LTQLPLEAIVPLLENFYGVKGRLEVVHSK---PLVVVDFAHTTDGMQQVFE---SFKNQK 329

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           I  +FG GGDRD+ KRP MG IA   A   I+T DNPRSE+ E I  +I+ GI      I
Sbjct: 330 ITALFGAGGDRDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINDSSKVI 389

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            + +R +AI  A+E L   +VL++ GKG E   I  +       D ++++
Sbjct: 390 IEKDRKKAILNALENLKDDEVLLILGKGDENTQIFKDKTI-FFSDQEVVK 438


>gi|157736775|ref|YP_001489458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
 gi|157698629|gb|ABV66789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
          Length = 429

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 166/369 (44%), Gaps = 26/369 (7%)

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK--ALSYLSSQGVTHVSVEAS 190
           + +I    G      G      +  Q    +  +PI L     +      G     +E S
Sbjct: 77  IYKILLSLGFKVALQGTRGFFINETQVEDYSLTTPIQLGNFVHIQKAIQNGCQFFVMEVS 136

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH ++Q+R++G+       TN+ RDH+DYH+T + Y   K       L  ES  ++  DD
Sbjct: 137 SHAIEQNRIEGLTFALKIHTNITRDHLDYHKTIEEYIRVKNSF----LSDESVKLVNIDD 192

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K     A        +   +    +        +  +V  S + K + F   + G F
Sbjct: 193 NVMKYNFTNA-------FTYSLKNLSDYKVTKYEFEHGMKVEFSYKEKTYTFTSMMMGIF 245

Query: 311 QVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            +YN + +     I        + + L+    V GR E V  N     + VD+AHT + +
Sbjct: 246 NIYNLMASIAAVHITTQKSLEDICQTLKNFSCVSGRMEIVSLN---PLVIVDFAHTPDGM 302

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + +LK   +  +  II VFG GG+RD  KRP+MG++A   +   IVT DNPR E+P+ I 
Sbjct: 303 DEVLK---SFPNKDIICVFGAGGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMII 359

Query: 430 AEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM-SVD 485
            +I+ GI          +R EA++ AI + N++ V++V GKG E   I+  G+KK    D
Sbjct: 360 EDILAGINDKSNVEVLIDRKEALKKAISLANEKSVILVLGKGDEATQII--GDKKFEFSD 417

Query: 486 CDIIREILG 494
            D + +IL 
Sbjct: 418 KDEVLKILN 426


>gi|315453540|ref|YP_004073810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
 gi|315132592|emb|CBY83220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
          Length = 442

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 111/422 (26%), Positives = 185/422 (43%), Gaps = 35/422 (8%)

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           I  +TP +     + +L              I+ +TGT+GK++ A+ +  + Q  G S  
Sbjct: 39  IPPHTPYIEASELKHYL---------NVNIPIIGITGTNGKTTTAALIAHLLQALGHSCA 89

Query: 146 QIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            +G       ++  +   LTTPS + L   ++   ++G     +E SSH + Q R+ G++
Sbjct: 90  LLGTRGFFIHNAQVKPKGLTTPSLLELYSDIARARAEGAKFFVMEVSSHAIAQERILGLE 149

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+  DH+DYH   + Y   K     + L  E   I+  DD + +     A+  
Sbjct: 150 FAAKVHTNITSDHLDYHGDIETYRAIK----NQFLSDEGLKIVNLDDPHVRFNPTNAYGY 205

Query: 264 GCR------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            C       V +   Q +     +  A    ++   +   +      PL G   ++N L 
Sbjct: 206 ACERKTHLSVNAYSLQPEISAHVEFHADPRARR-DPNSNAEMGIVHAPLMGLHNLHNLLG 264

Query: 318 AAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           A     A+       +   L     V GR E V    +   + VD+AHT++     ++  
Sbjct: 265 ALLCVRALTKQPLESLCSLLGDFPGVEGRMEVVH---QNPLVVVDFAHTADGF---VQIF 318

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            +  + +I VVFG GGDRD+ KRP+MG++A   A  + +T DNPRSE+P  I  +I+ GI
Sbjct: 319 NSFKAQKIKVVFGAGGDRDKSKRPLMGQVASTHALKSYITSDNPRSEEPLAIIEDILSGI 378

Query: 437 PG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   + + +R  AI  A+  L   +VL++ GKG E V I+         D  ++R 
Sbjct: 379 ASELRTRVVVEPDRKRAIELALSELQSDEVLLILGKGDECVQIIGQAHLP-FDDRALVRN 437

Query: 492 IL 493
             
Sbjct: 438 FF 439


>gi|317013264|gb|ADU83872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Lithuania75]
          Length = 447

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 107/412 (25%), Positives = 189/412 (45%), Gaps = 28/412 (6%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+ +     L     + Y      I+ +TGT+GK++ AS +  +       +  +G    
Sbjct: 45  LIAEKNLAILDFNELKNYFDFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGF 104

Query: 153 ISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +  Q  +  LTTP+ + L   L      G  +  +E SSH + Q R+ G+       T
Sbjct: 105 FINDKQIKEKGLTTPTLLELYSDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILT 164

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAG 264
           N+  DH+D+HQ  + Y + K   F++     +   E+ A+    +A++  + K+AH N  
Sbjct: 165 NITSDHLDFHQNIENYRDIKNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQ 224

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCI 323
              L+        + + +   + K+   I            L G + +YN L    G+ +
Sbjct: 225 AFSLNPFISASLCYQQDLRDPNLKEIALIHSP---------LLGRYNLYNILAGVLGVKL 275

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +    +   LE  + V GR E V +      + VD+AHT++ ++ + +   +  + +
Sbjct: 276 LTQLPLETIAPLLENFYGVKGRLEIVHSQ---PLVVVDFAHTTDGMQQVFE---SFKNQK 329

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           I  +FG GGDRD+ KRP MG IA   A   ++T DNPRSE+ E I  +I+ GI      +
Sbjct: 330 ITALFGAGGDRDKTKRPKMGAIASCYAHKIVLTSDNPRSENEEDIIKDILKGINNSSKVV 389

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            + +R +AI  A+E L   +VL++ GKG E   I  +       D +++++ 
Sbjct: 390 VEKDRKKAILNALENLKDDEVLLILGKGDENTQIFKDKTI-FFSDQEVVKDY 440


>gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 458

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/485 (21%), Positives = 185/485 (38%), Gaps = 44/485 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E+   +    ++   +R   +V +DSR I  G +FVA+ G + D H F+ QA+
Sbjct: 1   MYKMTLGEIAGAIKARMVKGNVDRVYTQVCTDSRQIVPGSLFVALKGERFDAHDFVEQAL 60

Query: 65  AQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA  ++VS   + L D          IL+VD+T   L   A     K    ++AVTG+
Sbjct: 61  QLGAHGVIVSRMQHDLPDGD--------ILLVDDTLTALQQLARYNRKKFSGPVVAVTGS 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  + +       +     T+ +F                 L    S G  
Sbjct: 113 NGKTTTKDMISALLET------KYLVLKTLGNF-------NNEIGLPLTLLGLDESHGAV 159

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G            AG  TN+G  H++   T +    AK  L    +P    
Sbjct: 160 VVEMGMRGLGEIDFLARIACPTAGVITNIGETHLERLGTVENIARAKTELLPH-IPVGGY 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFD 301
           A++  DD + +   K AH    +V+  G              +     + +V  +     
Sbjct: 219 AVLNGDDPWQR---KYAHLTRAKVIFYGMDHSNHVYADNIKCNMGAGASFTVIRDKIAKV 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  P+PG   +YNAL A  + +  G+   + +E L+ + +   R + +  N  G +I  D
Sbjct: 276 FHLPVPGRHNIYNALAAITVGLQEGLSWEMCMEGLQNVVLSGMRLQIIDCN--GLKIIND 333

Query: 362 -YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVT 416
            Y     S +  ++ +  +  +G+ + V G   +   R       +G+   +L    +VT
Sbjct: 334 TYNANPASSKAAVRILAEMPCAGKKVAVLGDMYELGQRTVQGHREVGETVQNLKIDILVT 393

Query: 417 DDNPRSEDPEKIR-AEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETV 472
                 E    I  A    G+         N  EA+     +L   D+++V G +G +  
Sbjct: 394 ----VGELALHIAEAAKAAGMDRKNIYVSRNNNEALEILNNILKAGDLVLVKGSRGMKME 449

Query: 473 HIVTN 477
            IV  
Sbjct: 450 KIVEG 454


>gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 459

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/493 (19%), Positives = 184/493 (37%), Gaps = 59/493 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I  D  EL   ++   + W E  +    V++DSR +    +F+ ++G K DGH +I Q 
Sbjct: 1   MISFDCVELAEAVTGK-LLWGEPDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQC 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA   + S             +    ++VD+T K L   A+    K    ++ +TG+
Sbjct: 60  FKAGASVCLTSKPIPE-------VAGCSAVLVDDTAKALRDLAAWHRKKFDIPVVGITGS 112

Query: 124 SGKSSVASFV-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            GK+S    V         + +  G  + +IG   T+                    L+ 
Sbjct: 113 VGKTSTKDMVSCVLSQKYSVLKTQGNFNNEIGLPLTV--------------------LNI 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            SS     + +  S  G         +      TN+G  HI+   +Q+    AK+ + E 
Sbjct: 153 DSSHETAVIEMGMSGFGEISRLTAIARPDIAIITNIGVSHIEKLGSQEGILKAKLEILEG 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTIS 294
           L  K    ++  DD   K +  +      R +  G  G   +                I+
Sbjct: 213 L-HKNGLVVLNGDDPLLKPLKGKLP---FRTVLYGMHGGSDYTASNYQTMGEQGTSFEIT 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V    ++   P+PG   VYNAL A    I + I   +++  +++      R   +  N  
Sbjct: 269 VNEAPYNVEIPVPGIHNVYNALAAIAAGIEMKIPMEIIINGIKQFSPGNMRQSII--NHN 326

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G +I  D Y  +  S++  +  +  I+SG   I V G   +     + +   +   + + 
Sbjct: 327 GIKIINDAYNASPQSMQAAINVLEEISSGSRSIAVLGDMFEMGNMSKDLHYSVGEFIKNK 386

Query: 413 ---AIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAG 466
               I+T      +D   I   +     G I      +  EA++  + ++   D +++ G
Sbjct: 387 KINYIIT----VGQDSGMISQAVADSGNGEIKLRHFESNKEALKYILGIVMPGDYILIKG 442

Query: 467 -KGHETVHIVTNG 478
            +G   +  + +G
Sbjct: 443 SRGM-KMEEIADG 454


>gi|259502140|ref|ZP_05745042.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
 gi|259169953|gb|EEW54448.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
          Length = 516

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 131/519 (25%), Positives = 214/519 (41%), Gaps = 59/519 (11%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIV 72
            L     +  +     V+ DSR + AG +F    GN      F+P+    A  QGA A V
Sbjct: 16  HLLDHTNKLTDFTATSVAYDSRKVTAGTLFFC-KGN------FLPKYLTMAREQGAVAYV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
               Y           + P ++V + ++ ++L  +  YG   + +  +A+TGT GK++ A
Sbjct: 69  AEQEYPE-------GGDLPAIIVKDEQEAMALLGAAFYGFPQDELTIIAITGTKGKTTTA 121

Query: 131 SFVQQICQRSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                I  R+      +  T         +    + LTTP  + L   +      G+TH+
Sbjct: 122 YMADHILGRATDQHVALFSTLDRVLGNRPADRFKSDLTTPESLDLFHDMRAAVDNGMTHL 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESP 243
            +E SS    +HR  G+    G F N+  DHI    H T   Y + K    E+LL     
Sbjct: 182 VMEVSSQAYKKHRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSGI 237

Query: 244 AIIYADDAYSKEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIH----------NKQQV 291
            +I A+ A+  +V    +A      +      G  + L    AI           ++ + 
Sbjct: 238 CLINAETAHLTDVYYTAKATTQPENIYLFARHGAAVQLPDGAAIDFEYRNDLEDLHESEF 297

Query: 292 TISVE-------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            ++         G    +   +PG++   NA+ A       G  +A  +  L+ +H + G
Sbjct: 298 ELAACSPKAQQLGIQGRYKTSVPGDYNEGNAVAAVISTALAGATAADAVATLDHVH-IKG 356

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           R E   T   G  IY+DYAH   SL+ +L    R   +G++ VV G  GD+   +R   G
Sbjct: 357 RMEMQKTRQHG-TIYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFG 415

Query: 404 KI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLN 457
           K  + +  D  I+T D+P  EDP KI  EI   I            +R  AI+ AI+  +
Sbjct: 416 KALSEEHPDQIILTTDDPGFEDPMKIAREINSHIDHDQVGAVQYIMDRPTAIKAAIDSSS 475

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             D++V+AGKG +    +   +   + D  I  + +  I
Sbjct: 476 NGDIVVLAGKGEDPYQKINGVDTPYATDSKIAADYIDEI 514


>gi|237751045|ref|ZP_04581525.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
 gi|229373490|gb|EEO23881.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
          Length = 451

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 121/496 (24%), Positives = 199/496 (40%), Gaps = 85/496 (17%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            ++ D+R ++   IF+                                  F  ++  N  
Sbjct: 4   HITDDTRKLREDSIFL---------------------------KTPQNAHFIESLPQNIR 36

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           IL  D  +++               ++ +TGT+GK++ A+ +  +    G     +G   
Sbjct: 37  ILERDELKEYF---------NTNIKLIGITGTNGKTTTAAAIYSVLLDMGYKVALLGTRG 87

Query: 152 TI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +  +   LTTPS + L + +   ++ G     +E SSH + Q R+ G++      
Sbjct: 88  MFINDTRKKPKGLTTPSLLELYEDIDMAANMGCDFFVMEVSSHAIKQERIYGLEFCLKIL 147

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+DYH+T + Y   KM+    L   E   II  DD     +          VL+
Sbjct: 148 TNITSDHLDYHKTWEDYAKTKMQF---LQSGECIKIINLDDKSGASM-----RFYPHVLT 199

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G + K         + +     +S+       ++      L G F +YN + A     A
Sbjct: 200 YGVESKGHLFVNAYGLQDGIFAQMSLRLQKDSMQECVIESSLFGLFNLYNLMAATLAIHA 259

Query: 325 I-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           I   D   +   ++    V GR E V   S+   + +D+AHT++ ++ + +   +  +  
Sbjct: 260 ITKQDIQSICACVKNFGGVSGRMEIV---SKTPLVIIDFAHTTDGMKQVFE---SFKTKN 313

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----- 438
           I VVFG GGDRD+ KR  MG  A   A    +T+DNPRSE+P  I  EI  G+       
Sbjct: 314 ISVVFGAGGDRDKSKREKMGACARFYAKKIYITNDNPRSENPLSIAQEIAKGVFAKSLNE 373

Query: 439 ---------------------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                                     +R EAI+ A+  L K  VL+V GKG E+V I  +
Sbjct: 374 TDIEIKENTSYEIKSSNAAITMQIILDRKEAIKLALRELQKDWVLLVLGKGDESVQIFRD 433

Query: 478 GEKKMSVDCDIIREIL 493
            E     D + ++EIL
Sbjct: 434 NEIH-FSDKECVQEIL 448


>gi|307638150|gb|ADN80600.1| UDP-N-acetylmuramoyl alanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 908]
 gi|325996749|gb|ADZ52154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 2018]
 gi|325998344|gb|ADZ50552.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pylori 2017]
          Length = 447

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 110/433 (25%), Positives = 194/433 (44%), Gaps = 28/433 (6%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +   +      +      L+ +     L     + Y      I+ +TGT+GK++ AS
Sbjct: 24  VLENPEEILFVKTPLNEKYAPLIAEKNLAILDFNELKNYFDFKIKIVGITGTNGKTTTAS 83

Query: 132 FVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  +       +  +G      +    ++  LTTP+ + L   L         +  +E 
Sbjct: 84  LMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLELYGDLEEAIRLKCEYFIMEV 143

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPA 244
           SSH + Q R+ G+       TN+  DH+D+HQ  + Y +AK   F++     +   E+ A
Sbjct: 144 SSHAIVQKRIAGLDFALKVLTNITSDHLDFHQNIENYRDAKNSFFKDEGLKVINRDETNA 203

Query: 245 IIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +    +A +  + K+AH N     L+        + + +   + K+   I          
Sbjct: 204 LFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDPNVKETALIHSP------- 256

Query: 304 FPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             L G + +YN L    G+ +   +    +   LE  + V GR E V +      + VD+
Sbjct: 257 --LLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSK---PLVVVDF 311

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT++ ++ + +N     + +I  +FG GGDRD+ KRP MG IA   A   I+T DNPRS
Sbjct: 312 AHTTDGMQQVFEN---FKNQKITALFGAGGDRDKTKRPKMGAIASCYAYKIILTSDNPRS 368

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ GKG E + I  +  
Sbjct: 369 ENEEDIIKDILKGINDSSKVIVEKDRKKAILNALENLKGDEVLLILGKGDENIQIFKDKT 428

Query: 480 KKMSVDCDIIREI 492
                D +++++ 
Sbjct: 429 I-FFSDQEVVKDY 440


>gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 453

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 148/387 (38%), Gaps = 30/387 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I +VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS          
Sbjct: 19  GENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P L+V +TR  L   A+ +  +    ++A+TG+SGK+SV      I ++ G   
Sbjct: 70  RLLVDEPQLLVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +  D ++ 
Sbjct: 130 Y------TAGNFNNDIGVPL-------TLLRLTAEHQFAVIELGANHIGEIAYTTDLVRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F  L P +  AI+ AD         +     
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFSGL-PVDGVAIVNADSNDFPHW--QVMLNH 233

Query: 265 CRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             V     Q           V  +      T+     +   L PLPG   V NAL A  L
Sbjct: 234 KTVWRFSPQAACDIDFFASDVDVLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATAL 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G     V   L +L  VPGR   +  +     +   Y     S+    + +  +  
Sbjct: 294 AMSVGATLEAVKSGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLAEMPG 353

Query: 382 GRIIVVFGCGGDRD--QGKRPIMGKIA 406
            R++VV   G   D        +G+ A
Sbjct: 354 YRVMVVGDMGELGDEAPECHRQVGEAA 380


>gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
 gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
          Length = 460

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/406 (23%), Positives = 161/406 (39%), Gaps = 35/406 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I  +SSDSR I    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EALSQHLSAHRVGDDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERQLAF---------DVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G          +       P+ L   L   S        + A+  
Sbjct: 118 IATILSAKHQVLYTAG----------NFNNEIGVPLTL---LRLTSEDKYGVFELGANHK 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +    ++       N+G  H++   +Q     AK  ++  L P    AII ADDA+
Sbjct: 165 GEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQP-GGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPL 306
           +  +  +A        S   +G       V A  +K       +  ++  G+  +   PL
Sbjct: 224 ADVMRVKAKQYKQLSFSQ-QEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G  QV NAL AA +CIA+G+    + E L +L  V GR +         R+  D Y   
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGR--VRLIDDSYNAN 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
             S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 341 PVSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|15612452|ref|NP_224105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori J99]
 gi|8134585|sp|Q9ZJC6|MURE_HELPJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4156007|gb|AAD06968.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
          Length = 447

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 109/433 (25%), Positives = 192/433 (44%), Gaps = 28/433 (6%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +   +      +      L+ +     L     + Y      I+ +TGT+GK++ AS
Sbjct: 24  VLENPKEILFVKTPLNEKYAPLIAEKNLAILDFNELKNYFDFKIKIVGITGTNGKTTTAS 83

Query: 132 FVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  +       +  +G           ++  LTTP+ + L   L         +  +E 
Sbjct: 84  LMYSLLLDLNKKTALLGTRGFFIDDKHIKEKGLTTPTLLELYSDLEEAIRLKCEYFIMEV 143

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPA 244
           SSH + Q R+ G+       TN+  DH+D+HQ  + Y +AK   F++     +   E+ A
Sbjct: 144 SSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDAKNSFFKDEGLKVINRDETNA 203

Query: 245 IIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +    +A +  + K+AH N     L+        +   +   + K+   I          
Sbjct: 204 LFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHDLRDPNLKETALIHSP------- 256

Query: 304 FPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             L G + +YN L    G+ +   +    +   LE  + V GR E V +      + VD+
Sbjct: 257 --LLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSK---PLVVVDF 311

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP MG IA   A   I+T DNPRS
Sbjct: 312 AHTTDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKMGAIASCYAHQIILTSDNPRS 368

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ GKG E + I  +  
Sbjct: 369 ENEEDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEVLLILGKGDENIQIFKDKT 428

Query: 480 KKMSVDCDIIREI 492
                D +++++ 
Sbjct: 429 I-FFSDQEVVKDY 440


>gi|315635954|ref|ZP_07891215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
 gi|315479738|gb|EFU70410.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
          Length = 429

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 166/369 (44%), Gaps = 26/369 (7%)

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK--ALSYLSSQGVTHVSVEAS 190
           + +I    G      G      +  Q    +  +PI L     +      G     +E S
Sbjct: 77  IYKILLSLGFKVALQGTRGFFINETQVEDYSLTTPIQLGNFVHIQKAIQNGCQFFVMEVS 136

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH ++Q+R++G+       TN+ RDH+DYH+T + Y   K       L  +S  ++  DD
Sbjct: 137 SHAIEQNRIEGLTFALKIHTNITRDHLDYHKTIEEYIRVKNSF----LSDDSVKLVNIDD 192

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K     A        +   +    +        +  +V  S + K + F   + G F
Sbjct: 193 NVMKYNFTNA-------FTYSLKNLSDYKVSKYEFEHGMKVEFSYKEKTYTFTSMMMGIF 245

Query: 311 QVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            +YN + +     I        + + L+    V GR E V  N     I VD+AHT + +
Sbjct: 246 NIYNLIASIAAVHITTQKSLEDICQTLKNFSCVSGRMEIVSLN---PLIIVDFAHTPDGM 302

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + +LK   +  +  II VFG GG+RD  KRP+MG++A   +   IVT DNPR E+P+ I 
Sbjct: 303 DEVLK---SFPNKDIICVFGAGGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMII 359

Query: 430 AEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM-SVD 485
            +I+ GI          +R EA++ AI + N++ V++V GKG E   I+  G+KK    D
Sbjct: 360 EDILAGINDKSNVEVLIDRKEALKKAISLANEKSVILVLGKGDEATQII--GDKKFEFSD 417

Query: 486 CDIIREILG 494
            D + +IL 
Sbjct: 418 KDEVLKILN 426


>gi|289704960|ref|ZP_06501375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
 gi|289558296|gb|EFD51572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
          Length = 599

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 145/515 (28%), Positives = 225/515 (43%), Gaps = 58/515 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR ++ G ++VA+ G    G  F   A+  GA  ++  +A      +    ++
Sbjct: 69  VTGVSLDSRVVRPGDLYVAVPGAHAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 127

Query: 90  TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L VD  R      A+R+YG        ++ VTGT+GK++ +     + +  G  S  
Sbjct: 128 APVLEVDAVRTAAGTVAARVYGGGRDAGPRLVGVTGTNGKTTTSFLAAALLEALGRRSGI 187

Query: 147 IGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +   +  + LTTP    L   ++ +  + V    +E SSH +   R+ G++  
Sbjct: 188 VGTILIRAGEREVPSTLTTPEATQLHALMALMREEEVDTAVMEVSSHAVAYQRIAGLRYA 247

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHN 262
              FTNL +DH+D H + Q YF AK  LF+    +   A+I  D          M RA  
Sbjct: 248 VAGFTNLTQDHLDMHGSMQEYFAAKAGLFDP--ARTDHAVITLDGGEGPRWGVAMARAAG 305

Query: 263 AGCRVLSVGYQG--------------KFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPL 306
           A    L++G                     + ++       + T+     G++      L
Sbjct: 306 APVTTLALGPAAPTPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGRELRASVGL 365

Query: 307 PGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLH--------VVPGRFEFVGTNSRGGR 357
           PG F V N AL    +  A+G +    L  +  +          VPGR E VG       
Sbjct: 366 PGRFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGRMEVVGREPD--- 422

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             VD+AH  + +   L+++    +     GR ++VFG  GDRD+ KRP+MG IA   AD+
Sbjct: 423 AVVDFAHNPDGMVQALRSLADARAAAGMRGRTLIVFGSAGDRDRDKRPVMGAIAARAADV 482

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTA----------IEMLNK 458
            IVTDD P SEDP  IRA I+ G     ++  R E     I             +E+   
Sbjct: 483 VIVTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRPVVIEEVADRAAAIRRAVELAGP 542

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           QD +++AG+GHET     +GE     D   +RE L
Sbjct: 543 QDGILLAGRGHETTMDY-DGELVPLDDRVALREAL 576


>gi|317010132|gb|ADU80712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori India7]
          Length = 447

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 104/391 (26%), Positives = 183/391 (46%), Gaps = 28/391 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R  G+       TN+  DH+D+HQ  + Y +A
Sbjct: 124 LYGDLEEAVRLKCEYFIMEVSSHAIVQKRTAGLDFALKILTNITSDHLDFHQNIENYRDA 183

Query: 230 KMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVC 283
           K   F++     +   E+  +    +A++  + K+AH N     L+        + + + 
Sbjct: 184 KNSFFKDEGLKVINRDETNVLFNPINAHTYALDKKAHLNVQAFSLNPFISASLCYQQDLR 243

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVV 342
            ++ K+   I            L G + +YN L    G+ +   +   ++   LE  + V
Sbjct: 244 DLNLKEIALIHSP---------LLGRYNLYNILAGVLGVKLLTQLPLEVIAPLLENFYGV 294

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E V +      + VD+AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP M
Sbjct: 295 KGRLEIVHSK---PLVVVDFAHTTDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKM 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
           G IA   A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   
Sbjct: 349 GAIASCYAHQIILTSDNPRSENEEDIIKDILKGISNSSKVIIEKDRKKAILNALENLKDD 408

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +VL++ GKG E + I  +       D ++++
Sbjct: 409 EVLLILGKGDENIQIFKDKTI-FFSDQEVVK 438


>gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
          Length = 457

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 104/486 (21%), Positives = 180/486 (37%), Gaps = 64/486 (13%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ L      E  +   I      E KI ++  DSR ++   +F+AI+G   DGH FI  
Sbjct: 1   MESLTLAQIAEAASGKIIKGKA--EIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDS 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVT 121
           A+  GA+A++V    +         SN  ++ VD+T K L   A     K  +  I A+T
Sbjct: 59  AVENGAKAVIVDRQIND-------YSNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAIT 111

Query: 122 GTSGKSSVASFVQQI-------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           G+ GK+S    +  +        + SG  + QIG   T+                    L
Sbjct: 112 GSVGKTSTKDMIAAVLAQKYKTLKTSGNYNNQIGLPLTL--------------------L 151

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              S      + +  S  G  +   +  +      TN+G  HI+   + +    AK  L 
Sbjct: 152 RLCSKDEFAVLEMGMSGFGEIELLAELARPQIAVITNVGPAHIEQLGSIENVAAAKKELL 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQV 291
           + L  K   AI+  D+ Y++++   A N   ++++ G+           K     N+++ 
Sbjct: 212 DSL-DKSGTAILNYDNEYTRKM---AENFNSKLITFGFSAGADLQVIENKFNKDLNREEF 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I  +GK   F    PG+  +YNAL A  +     ++   + + L K+     R E    
Sbjct: 268 KIIWQGKKLKFYLNKPGKHNIYNALAAIAIGFLNNMNPKGIQDGLSKIDFSDLRMEIKEL 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC----GGDRDQGKRPIMGKIAL 407
            +    I   Y     S+   L  +  +   R I V       G    +    I   IA 
Sbjct: 328 ENGAIVINDSYNANPISVRAALDVLAEMKGKRKIAVLASMLELGKMEKKAHLEIGEYIAK 387

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHG-------IPGFIEKGNRIEAIRTAIEMLNKQD 460
              D+ I            +I   I  G       +       ++   ++   + L K D
Sbjct: 388 QNIDLLI---------TVGEIAELIAEGAERTAMPVEKIYSFADKASTLKFLKDNLKKDD 438

Query: 461 VLVVAG 466
           +L++ G
Sbjct: 439 LLLIKG 444


>gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580]
 gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580]
          Length = 491

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 89/487 (18%), Positives = 182/487 (37%), Gaps = 52/487 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+  E+   + +    +  R I  VS+DSR +  G +F+ + G + +GH+F  QA  +
Sbjct: 40  TVKEIAEMSEGV-LTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQE 98

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++ + +              P+++VD+T + L   A     +    ++ VTG++GK
Sbjct: 99  GVAAVLWNRS------EPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGK 152

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++    +  +        +  G  +  IG   TI                    L+    
Sbjct: 153 TTTKDMIHAVLGTEYKVHKTEGNYNNHIGLPLTI--------------------LAMPED 192

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  S+ G         +      TN+G  H+    +++    AK+ +   L  
Sbjct: 193 TEVAILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSK 252

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + +   +  D+     + +R +       + G    F +  +      ++     V G +
Sbjct: 253 EGTLIYV-GDEPL---LTERLNQPPYDTKTFGEDPAFDYQLE-DMTQTEEGTAFRVRGIE 307

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  V NAL A      + +  A + E L KL V   R E V T      I 
Sbjct: 308 NGFFIPVLGKHNVKNALAAIAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIIN 367

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
             Y  +  S++  ++ +  +   G+ I+V G     G+ ++     +G+     +   + 
Sbjct: 368 DAYNASPTSMKAAIELVEQMKGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLF 427

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAI-EMLNKQDVLVV-AGKGHE 470
           T      E    I    +   P            ++++  + E  N  D+++V A +G  
Sbjct: 428 T----YGELGAYIAKGALKHFPEHRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRGMR 483

Query: 471 TVHIVTN 477
              ++ +
Sbjct: 484 LEDVIKD 490


>gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 185/479 (38%), Gaps = 32/479 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + +L+  +         +     +++ I  +S+DSR ++   +F+ + G K DG  F+  
Sbjct: 1   MMELLIDEIVRATEG-KLIKGSLKDKVI-GISTDSRKVKKDELFIPLKGEKYDGEDFVKD 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI +GA A++ +    L++       +  ++ V+ T + L   AS    K     +AVTG
Sbjct: 59  AIDKGAIAVITAR---LENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++    + QI  +      +     T  +F                  +   +  +
Sbjct: 116 SSGKTTTKDMIAQILSK------KYKVLKTEGNF-------NNEIGLPLTIFNLEDTHQI 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +  S  G  +   +  +     FTN+G  HI+   +++    AK  L E    +E+
Sbjct: 163 AVVEMGMSGFGEIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENF-KEEN 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++ ADD    ++         +    G +   I    +       + T+  +  + + 
Sbjct: 222 VIVLNADDDMLSKI---PLKYSSKYYRYGIKSGEIKACDIKKGEKDIKYTLKYKDLEKEI 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
              +PG   VYN+L A  + +  GI+   + E L+       R   +       +I  D 
Sbjct: 279 KLSVPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIEKGDM--KIIDDV 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           Y    +S++  L  +R + + R I V       G    +  + I   +A    DI I + 
Sbjct: 337 YNANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSG 396

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
           D  +    E     +  G   F+   N  E      +++ + D ++V G +G +   IV
Sbjct: 397 DMSKYIAEESKVCGM-KGNNIFVCNTN-EEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453


>gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
 gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
          Length = 460

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 93/406 (22%), Positives = 159/406 (39%), Gaps = 35/406 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I  +SSDSR I    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EALSQHLSAHRVGDDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G          +       P+ L   L            + A+  
Sbjct: 118 IATILSAKHQVLYTAG----------NFNNEIGVPLTL---LRLTPEDKYGVFELGANHK 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +    ++       N+G  H++   +Q     AK  ++  L      AII ADDA+
Sbjct: 165 GEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHL-QSGGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPL 306
           +  +  +A        S   +G       V A  +K       +  ++  G+  +   PL
Sbjct: 224 ADVMRVKAKQYKQLSFSQ-QEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G  QV NAL AA +CIA+G+    + E L +L  V GR +         R+  D Y   
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGR--IRLIDDSYNAN 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
             S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 341 PVSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|332358296|gb|EGJ36122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK355]
          Length = 400

 Score =  239 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 110/414 (26%), Positives = 185/414 (44%), Gaps = 24/414 (5%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+L+V++ ++ +SL A   Y    + +  LA TGT GK++ A F  QI  +S   +  
Sbjct: 2   GIPVLLVNDVKQAMSLLAMEFYDHPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 61

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
               +T+       + LTTP  + L K ++   S   TH+ +E SS    + R+ G+   
Sbjct: 62  STMNTTLDGETFFKSTLTTPESLDLIKMMAQALSNDRTHLIMEVSSQAYLKKRVYGLTFD 121

Query: 206 AGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            G F N+  DHI    H T + YF  K  L +         I+ +   + + V ++    
Sbjct: 122 VGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDN----SRAVIVNSGMDHFQIVKEQVA-- 175

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLC 322
                    +  F        I + Q  +    GK    +   L G F   NA+ AA  C
Sbjct: 176 -------SMEHDFYGADSSNTITDSQAFSFEATGKLAGHYDIQLIGRFNQENAVAAALAC 228

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +G     + + +     VPGR E V T   G +++VDYAH   SL  +L  ++    G
Sbjct: 229 LRLGASLEDIKKGIAA-TRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVVQEHQKG 286

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           +II++ G  G++ + +R   G +     ++  I+T D+P  EDP  I  EI   I   +E
Sbjct: 287 KIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVE 346

Query: 442 -KGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R EAI+ A+ +   + + +++AGKG +   IV   +     D  +  + L
Sbjct: 347 KIADREEAIKKALSLTEREGEAVILAGKGADAYQIVEGEKVPYPGDYALAEKYL 400


>gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
 gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
          Length = 460

 Score =  239 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/406 (22%), Positives = 159/406 (39%), Gaps = 35/406 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I  +SSDSR I    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EALSQHLSAHRVGDDITIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G          +       P+ L   L            + A+  
Sbjct: 118 IATILSAKHQVLYTAG----------NFNNEIGVPLTL---LRLTPEDKYGVFELGANHK 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +    ++       N+G  H++   +Q     AK  ++  L      AII ADDA+
Sbjct: 165 GEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHL-QSGGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPL 306
           +  +  +A        S   +G       V A  +K       +  ++  G+  +   PL
Sbjct: 224 ADVMRVKAKQYKQLSFSQ-QEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G  QV NAL AA +CIA+G+    + E L +L  V GR +         R+  D Y   
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGR--VRLIDDSYNAN 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
             S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 341 PVSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|257877011|ref|ZP_05656664.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
 gi|257811177|gb|EEV39997.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
          Length = 506

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 194/502 (38%), Gaps = 29/502 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+ + K+     + +   P +  +     +S DSR   A  +F    G       ++  
Sbjct: 16  LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAA 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG +  +  + Y               ++V + R+ +++ A   YG   E +  + +
Sbjct: 74  AIDQGIQCYISETPYDNFATYG--------IIVTDIRETMAVIAQAFYGHPQEQLVTIGI 125

Query: 121 TGTSGKSSVASFVQQICQRS-GLSSFQIG--PTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK+S A F + I   S G           S       +  LTTP  + L K ++  
Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            + G+TH+ +E SS      R+ GI    G+F N+  DHI    H T   Y   K  L  
Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVEHPTYDDYLYCKRELIR 245

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTIS 294
                    I+     +   + +         ++ G       +++              
Sbjct: 246 N----SKQMILNRQSDHYHLLRETCEVHQVPYITYGRSDADYVVQEGTDLKGFALSAASD 301

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V     ++   + G F   NA  A       G       + L  + +       V     
Sbjct: 302 VLQVSGEYQLGILGSFNHENAAAAILAACLAGASREDAQKVLPTVIIPG--RMIVLEKEN 359

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  + VDYAH   S + + +  R +   GR++ V G  G + Q +R  MG+   + AD  
Sbjct: 360 GAVMIVDYAHNYLSFQSLSELARQLRPEGRLLFVTGSAGGKAQSRRADMGRALGEYADKV 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +T D+P  E+ + I  EI   I       I + +R +A+++AI   + +D++++AGKG 
Sbjct: 420 YLTSDDPDFEEADAIAKEIAAAITNPEVAIIHEMDRAQAVKSAIAEADSKDIVIIAGKGA 479

Query: 470 ETVHIVTNGEKKMSVDCDIIRE 491
           E    V   +     D  + ++
Sbjct: 480 EQYLKVAGKKVPYIGDLTLAQQ 501


>gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
 gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
          Length = 456

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 181/480 (37%), Gaps = 38/480 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+  E+   + +    +  R I  VS+DSR +  G +F+ + G + +GH+F  QA  +
Sbjct: 5   TVKEIAEMSEGV-LTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQE 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++ + +              P+++VD+T + L   A     +    ++ VTG++GK
Sbjct: 64  GVAAVLWNRS------EPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +           G    +     +       P+ +   L+      V  + 
Sbjct: 118 TTTKDMIHAVL----------GTEYKVHKTEGNYNNHIGLPLTI---LAMPEDTEVAILE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S+ G         +      TN+G  H+    +++    AK+ +   L  + +   +
Sbjct: 165 MGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYV 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+     + +R +       + G    F +  +      ++     V G +  F  P+
Sbjct: 225 -GDEPL---LTERLNQPPYDTKTFGEDPAFDYQLE-DMTQTEEGTAFRVRGIENGFFIPV 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V NAL A      + +  A + E L KL V   R E V T      I   Y  + 
Sbjct: 280 LGKHNVKNALAAIAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASP 339

Query: 367 NSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            S++  ++ +  +   G+ I+V G     G+ ++     +G+     +   + T      
Sbjct: 340 TSMKAAIELVEQMKGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFT----YG 395

Query: 423 EDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAI-EMLNKQDVLVV-AGKGHETVHIVTN 477
           E    I    +   P            ++++  + E  N  D+++V A +G     ++ +
Sbjct: 396 ELGAYIAKGALKHFPEHRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRGMRLEDVIKD 455


>gi|210631902|ref|ZP_03297114.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
 gi|210159827|gb|EEA90798.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
          Length = 552

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 134/529 (25%), Positives = 231/529 (43%), Gaps = 48/529 (9%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGH-LFI 60
           + L   D  ++++   +    + +    ++ ++ DSR +    +FV   G        F+
Sbjct: 31  KPLTLFDLVDVLHASDVEARVFGDGAACVDGMAIDSREVAPRNLFVC-KGAGF--RPAFL 87

Query: 61  PQAIAQGAEAIVVS---SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
             A+A GA A +        S+        + TP LVV + R+ ++L A  +  +HPE+ 
Sbjct: 88  ESAVAAGAAAYLCEGVGEGLSIPSELVAAAAVTPALVVSDVRRAMALVAP-VIYRHPEDQ 146

Query: 118 L---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKA 173
           L    +TGT GKS+VA  ++ I   +G     +G   T       ++  TTP    L + 
Sbjct: 147 LHVVGITGTKGKSTVAYMLRSILVAAGQEPSILGSIETDDGKVRYESHNTTPEAPDLWRH 206

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231
           L      G   + +E SS GL   R+ G+    G F N+GRDHI    H   + YF +K+
Sbjct: 207 LRNTVDAGRRTMVMEVSSQGLKYDRVLGLPFEIGCFLNIGRDHISGVEHPDFEDYFASKL 266

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHN--- 287
           R+F +       A++     +   V++ A +A C    +V + G+  H  KV  +     
Sbjct: 267 RIFNQC----EVAVVNLATDHVDRVLQAAKSAPCVATFAVEHAGEGSHGGKVWPVEPLFI 322

Query: 288 ----------KQQVTIS---VEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                         T+     EG+   +      +PG F V NAL A  +   +G+    
Sbjct: 323 ASGVTQLPTGGLAFTVRERAAEGEIACEEHIELGMPGLFNVDNALAAISMARLLGVGYDA 382

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGC 390
           +   L ++  VPGR E V +        VDYAH   S E + K+++      R++ +FG 
Sbjct: 383 IRAGLAQIR-VPGRMELVSSADGHVLAIVDYAHNELSFETLFKSVKAEYPDRRVVALFGA 441

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIE 447
            G + Q +R  + ++A   AD  + T+++P  +  E I AE++   P  +      +R E
Sbjct: 442 PGGKAQERREALPRVAGAYADHLVYTEEDPAHDRVEDICAELVKNTPAGVSHEVILDREE 501

Query: 448 AIRTAIEML---NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           A+RT +E      +  V+++  KG E      +   ++  D  I RE+L
Sbjct: 502 AVRTVLERALACGEPSVVLLLAKGDEETMHRGDEYPEVKSDLAIAREVL 550


>gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
 gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
          Length = 460

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 95/405 (23%), Positives = 161/405 (39%), Gaps = 33/405 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G  +            TP+  +    L      G  H      + 
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFEL------GANHKGEIDYTS 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL       ++       N+G  H++   +Q     AK  +F  L   +  AII ADDA+
Sbjct: 172 GL-------VRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHL-QADGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFDFLFPLP 307
           +  +  +A        S        H+  +   H        +  ++  G+    + PL 
Sbjct: 224 ADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYSGESCQVVLPLA 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
           G  QV NAL AA +CIA+G+    + E L +L  V GR +         R+  D Y    
Sbjct: 284 GRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGR--VRLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
            S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
 gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
          Length = 433

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 161/411 (39%), Gaps = 24/411 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L     + +E K    S D+R+I+ G ++VA+ G + DGH F+  A  
Sbjct: 1   MIELTLSEVAPALG-TTWKGQEIKFTGCSIDTRNIKPGTLYVALRGERFDGHDFVKDAQQ 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA AI+V            +  + P L V +TRK L   A     +    ++A+TG++G
Sbjct: 60  KGASAIIVERD---------VVCDLPTLRVADTRKALGDLARFWRQRFDLPVVAITGSNG 110

Query: 126 KSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I  Q+    S +I   +T  +   D  +            +  ++     
Sbjct: 111 KTTTKEMLKTIFTQKISAESNEINVLATQGNLNNDIGVP-------LTLFNLQANHRYAI 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +     K    + T     H++  ++ +    AK  +F  L  ++  A
Sbjct: 164 IEMGANHAGEIAYLTQMAKPSVATITQCAPAHLEGFKSVEGVALAKGEIFSHLT-EDGIA 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II  DDAY+    + A +      ++      +  K +    +     +  +  D     
Sbjct: 223 IINNDDAYTTLWHELAASHQINTFAL-ENTADVTAKDIQLNEDSCDFILHTQKSDIAIHL 281

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
           PLPG+  + NAL A+   +A G    ++ + L+ +  V GR +    N  G  +  D Y 
Sbjct: 282 PLPGQHNIMNALTASACALACGCSLEIIQQGLQNMQPVKGRLQLHKIN--GITLIDDTYN 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               SL   L  +         ++ G   +  Q       +      ++ +
Sbjct: 340 ANPTSLNAALAILSNYPP-PYWLILGDMKELGQKSAEFHQQAGQRAREVGV 389


>gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
 gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
          Length = 459

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/493 (18%), Positives = 178/493 (36%), Gaps = 59/493 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  +  ELI  +    +  +       V++DSR +    +F+ ++G K DGH +I Q  
Sbjct: 1   MISFNCSELIEAVGGKLLWGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQCF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA   + S             +    ++VD+T K L   A+    K    ++ +TG+ 
Sbjct: 61  NAGATVCLTSKQIP-------TVTGCTAILVDDTAKALRDLAAWYRRKFDIPVVGITGSV 113

Query: 125 GKSSVASFV-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           GK+S    V        ++ +  G  + +IG   T+ +                      
Sbjct: 114 GKTSTKDMVSCVLSQQYKVLKTQGNFNNEIGLPLTVFNIDY------------------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S     + +  S  G         +      TN+G  HI+   +Q+    AK+ + EEL
Sbjct: 155 -SHEAAVIEMGMSGFGEISRLTAIARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISV 295
             K+   ++  DD     +  +      R +  G      +  L             ISV
Sbjct: 214 -DKDGLVVLNGDDPLLSSLKGKL---SFRTVFYGMNVGSDYTALNYQPKGEQGTTFEISV 269

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               ++   P+PG   VYNAL A    I + I   +++  +++      R   +  N  G
Sbjct: 270 NDCLYNVEIPVPGIHNVYNALAAIAAGIEMKIPMEIIINGIKQFSPGNMRQSII--NHNG 327

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDL 409
            +I  D Y  +  S++  +  ++ I+S    +     +F  G         +   I    
Sbjct: 328 IKIINDAYNASPQSMQAAINVLQEISSESRSIAVLGDMFEMGDMSKDMHYSVGDFIKNKK 387

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +    + R      I   +        E     N  EA++  +E++   D +++ G
Sbjct: 388 INYLVTVGLDSR-----MISQAVADYGNSQTEIHHFENNKEALKYILEIVMPGDYILIKG 442

Query: 467 -KGHETVHIVTNG 478
            +G   +  + +G
Sbjct: 443 SRGM-KMEEIADG 454


>gi|840843|emb|CAA58873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 325

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 11/333 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  ++QL  FP   R+  I E++ DS  ++   +F+ + G  +DG   I  A+ +GA A
Sbjct: 1   MPMSLSQL--FPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATA 58

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           +    AY  +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+S
Sbjct: 59  V----AYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+  V Q     G     +G   T      +  R TTP P+ +   L+ L   G   V++
Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSHGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF    P     +I 
Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPDLRCRVIN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +     ++     S+     F++ ++        +  +     +     PL 
Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           G F + N L A G  + +G     +L  L +L 
Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQ 325


>gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
 gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 452

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/402 (24%), Positives = 167/402 (41%), Gaps = 22/402 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                    VS+DSR ++ G +F+A+ G + DGH FI  AI  GA   +VS+  ++    
Sbjct: 16  SGDNAVFTGVSTDSRTLKPGDLFIALSGEQFDGHRFISAAIENGAVTAMVSADTAI---- 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              + +   + V +TR  L   A+    ++   ++AVTG++GK++V   +  I +     
Sbjct: 72  LPTQPDFGWIKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVKEMIAAIFR---CE 128

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
                  +T  +   D        I + + L  L S+ V  V     +H  +   L  + 
Sbjct: 129 FGLENVLATTGNLNND--------IGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLSRLA 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN G  HI+Y  T +A   AK  +FE L  ++  AII ADD +++   + A N
Sbjct: 181 APTIAVITNAGTAHIEYLGTTEAIARAKGEIFEGL-EEQGVAIINADDPHARLWRQLAGN 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V+     G      +  A  +  +  + +     +    +PG   VYNAL AA   
Sbjct: 240 RP--VVDFSMNGTAAVSARQPAHPSGDRWLLQLPDDTIEITLQVPGRHNVYNALAAAAAA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A GI ++ + E L     VPGR +     +R   I   Y    +S++  L  +  +   
Sbjct: 298 TAAGISTSSIAEGLHSFRGVPGRLQKKTGLNRSVLIDDTYNANPDSMQAALNVLAEMPGK 357

Query: 383 RIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +I+++   G    D       I  + A    DI +   ++ R
Sbjct: 358 KILIIGDMGELGADTATFHHRIGQQAASAGVDILLALGESSR 399


>gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
 gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
          Length = 466

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/470 (21%), Positives = 177/470 (37%), Gaps = 40/470 (8%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            ++      +++             K  +VS+D+R I++G++FVA+ G+  DGH FI  A
Sbjct: 13  SNMAEFTLSQVLEATKGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAA 72

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I +GA   +V    S++            + VDNT       A     +    ++A+TG+
Sbjct: 73  IEKGATGAIVEKGRSVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGS 124

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++    V  +           G    +    ++       P  L   L   +     
Sbjct: 125 SGKTTTKEMVAAVL----------GTEFNVLKTEKNFNNEIGLPKTL---LRLTAEHEAC 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G  +      +   G  TN+G  HI+   +++A   AK  L    LP+ S 
Sbjct: 172 VVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSV 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           AI+  DD Y K + + A     + ++ G +         +    +  + T     + FD 
Sbjct: 231 AILNEDDPYVKAMDRLAKG---KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDI 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+ GE  VY+AL A      +GI S  + + L +    P R E V        I  D 
Sbjct: 288 FLPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFSGTPMRQEIVPFED--IVILNDA 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           Y    +S+   +K +  +   R I     +   G   ++  R I   +A +   +     
Sbjct: 346 YNANPSSMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFG 405

Query: 418 DNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D         I  E    G+  F    +   A   + ++  K DV++V G
Sbjct: 406 DAAAF-----IAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILVKG 449


>gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 455

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/470 (20%), Positives = 179/470 (38%), Gaps = 40/470 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++         +     R R++ ++ +DSR  + G +F AI G   DGH FIPQ
Sbjct: 1   MKNLTLENIAGACGGAYVGSDADRSREVADIVTDSRRAKEGSLFAAICGEHVDGHRFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             AQGA  ++   A +         +  P ++V++T K L   A     +    ++ +TG
Sbjct: 61  VYAQGALCVLCEKAPA--------EAQGPYILVESTLKALMAIAEFYRQQLDIKVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +         +     T  +F  +          L   +  L+ +  
Sbjct: 113 SVGKTSTKEMIASVLSE------KYRVLKTPGNFNNEL--------GLPLTVFQLTEEDE 158

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     +H  + HRL  I +      TN+G  H+++   +     AK  +F+ + P  
Sbjct: 159 VAVLEMGINHFGEMHRLSKIARPDVCVITNIGTCHLEFLGDRDGVLRAKSEIFDFIAPDG 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +   DD  S   +K       +   + +           A     +  I    + F 
Sbjct: 219 QIVLNGDDDKLSA--LKEVRGITPQFFGIEHACAIRATDIENAGLKGVKCRIHDGTESFA 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG   V NAL A  +  A+G+    +   +EKL  + GRF  +   + G  +  D
Sbjct: 277 VTIPIPGYHMVLNALAATAVGRALGMSLEEIRRGIEKLQALGGRFRIL--EAGGITVVDD 334

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            Y     S++  L  +     GR I V G  G+  + ++ + G++    A +     D P
Sbjct: 335 CYNANPMSMKASLG-VLADAPGRKIAVLGDMGELGENEQQLHGEVGRFAAGL-----DIP 388

Query: 421 RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +   +   I         I   +  E +R   + + K D ++V
Sbjct: 389 VFFCVGALCRYMAEEIRRLSPEKQVITADSVEEVLRLLPDSVQKGDTVLV 438


>gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS155]
 gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella baltica OS155]
          Length = 460

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/406 (23%), Positives = 163/406 (40%), Gaps = 35/406 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGMFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G  +            TP+  +    L      G  H      + 
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFEL------GANHKGEIDYTS 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL       ++       N+G  H++   +Q     AK  +F  L   +  AII ADDA+
Sbjct: 172 GL-------VRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHL-QADGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPL 306
           +  +  +A        S    G       V A  +K       +  ++  G+    + PL
Sbjct: 224 ADFMSVKARPYKQLSFSQ-QDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G  QV NAL AA +CIA+G++   + E L +L  V GR +         R+  D Y   
Sbjct: 283 AGRHQVSNALAAASVCIALGLNLTEIAEGLSQLTPVKGRMQPSQLGR--VRLIDDSYNAN 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
             S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 341 PVSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 454

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 159/452 (35%), Gaps = 40/452 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +   V++DSR ++ G +FVA+ G+  DGH +  +A+  GA  +VVS   S       +
Sbjct: 17  DFEFTGVTTDSRAVKPGELFVALKGDNFDGHDYCAKAVELGAAGVVVSHEVS------GL 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            +   + +V++T       A      K    + A+TG++GK+S    +            
Sbjct: 71  PAGVAVFMVEDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTSTKDLLAACLS------C 124

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +     T  +F                 LS      +  V +     G         +  
Sbjct: 125 KYNVVKTQGNF-------NNEIGLPKTLLSIKPDTDIAVVEMGMRGLGQIAELCRIAEPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           +G  TN+G  H++   + +    AK  +   L P++  A++  D+ Y   V+  A     
Sbjct: 178 SGLITNVGETHMELLGSMENIGKAKSEIVLNL-PEDGFAVLNGDNEY---VLPAADKTKA 233

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLC 322
           +V+  G  +        +         T + +  G+  +    L GE  VYNAL A    
Sbjct: 234 KVVYFGLGENCDFRGSDIVTSGAGTTFTCTHKATGEAVNVSLQLIGEHNVYNALSAIAGA 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---- 378
              G+  A+  + L    +   R E V        I   Y  +  S+E  LK +      
Sbjct: 294 FCYGVPMAVSAQALATARLTGSRQEIVYIGDITF-INDAYNASPASMEAALKTLAEAKKA 352

Query: 379 -ITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                R I V     +           +G+ A++     ++T           I  E   
Sbjct: 353 AHGKARTIAVLADMLELGDISEDAHRRVGRWAVENGVDFVLT----YGPQAAYIADEAAE 408

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    +R EA      M +  D++++ G
Sbjct: 409 LGGKSKHCADRQEAADALRLMASAGDIILLKG 440


>gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
 gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
          Length = 460

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/413 (23%), Positives = 166/413 (40%), Gaps = 49/413 (11%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 V-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +        QI   +G  + +IG   T+                    L   S+      
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTL--------------------LRLTSADEFGIF 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++       N+G  H++   +Q     AK  +F  L   +  AI
Sbjct: 158 ELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHL-QADGTAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKD 299
           I ADDA++  +  +A        S    G       V A  +K       +  +S  G+ 
Sbjct: 217 INADDAFADFMSVKARPYKQLSFSQ-QDGAAKRHIDVIATGHKTNADGCYRFMLSYLGES 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + PL G  QV NAL AA +CIA+G+    + E L +L  V GR +         R+ 
Sbjct: 276 CQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGR--VRLI 333

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
            D Y     S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 334 DDSYNANPVSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 315

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/318 (29%), Positives = 143/318 (44%), Gaps = 9/318 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++  SR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +    G  TNL RDH+DYH T +AY  AK +LF          +I  DDA+
Sbjct: 180 GLDQGRATALAFDVGVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSA 330
            N L A G  + +     
Sbjct: 298 SNVLSAVGALLGLDYALD 315


>gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 1313]
          Length = 457

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/463 (22%), Positives = 171/463 (36%), Gaps = 55/463 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+DSR+I+ G +F+ ++G + DGH +I  A+  GA   +                   
Sbjct: 28  NISTDSRNIKQGDLFIPLIGERFDGHNYIASALEHGALGSLTQKETE-------PFPGKV 80

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSS 144
           ++ V +T K L   A     K     + +TG+ GK+S    V        ++ +  G  +
Sbjct: 81  LIKVSDTLKALRDLAVYYRQKFKIPFVGITGSVGKTSTKEMVAAVLSKGFKVLKNQGNFN 140

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +IG   TI                     +   S     V +  S  G        +K 
Sbjct: 141 NEIGVPLTI--------------------FNLDKSHEAAVVEMGMSGFGEISRLTSIVKP 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  HI+   ++     AKM +FE L  K   AI+  DD   K +    +   
Sbjct: 181 DIAIITNIGVSHIEKLGSKNNILKAKMEIFEGLNEK-GLAILNGDD---KLLYGLNNLLK 236

Query: 265 CRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            R +  G +                     I + GK++    P+PG   VYNAL    + 
Sbjct: 237 FRTVFYGMEEGLDLRAYNVESLGEKGSTFDIEIRGKEYRVRIPVPGIHNVYNALAGIAVG 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           I +GI    ++E +E+      R + +  N  G +I  D Y  +  S+E  +  ++ I+ 
Sbjct: 297 IELGIPPEKIVEGIEEFSPGKMRLDII--NYNGLKIINDAYNASPQSMEAAIDVLKDISG 354

Query: 382 -GRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            GR   V       G         +    A    D  +   +  RS     +R  +  G 
Sbjct: 355 EGRTFAVLGDMLELGEFSKSAHMEVGKYAASKGIDYIVAVGEY-RS---NIVRGAVEAGA 410

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                 E  + ++A +   E +   DVL+V G +G +   IV 
Sbjct: 411 KEEKVFEFKDNMDAAKFLKEFVKSGDVLLVKGSRGMKMEEIVN 453


>gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
 gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
          Length = 460

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/405 (23%), Positives = 161/405 (39%), Gaps = 33/405 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G  +            TP+  +    L      G  H      + 
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFEL------GANHKGEIDYTS 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL       ++       N+G  H++   +Q     AK  +F  L   +  AII ADDA+
Sbjct: 172 GL-------VRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHL-QADGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFDFLFPLP 307
           +  +  +A        S        H+  +   H        +  ++  G+    + PL 
Sbjct: 224 ADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYLGESCQVVLPLA 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
           G  QV NAL AA +CIA+G+    + E L +L  V GR +         R+  D Y    
Sbjct: 284 GRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGR--VRLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
            S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
 gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
          Length = 466

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 101/469 (21%), Positives = 177/469 (37%), Gaps = 40/469 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++      +++             K  ++S+D+R I++G++FVA+ G+  DGH FI  AI
Sbjct: 14  NMAEFTLSQVVEATQGANAHTDNIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAI 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA   +V    +++            + VDNT       A     +    ++A+TG+S
Sbjct: 74  EKGATGAIVEKGRAVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSS 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    V  +           G    +    ++       P  L   L   +      
Sbjct: 126 GKTTTKEMVAAVL----------GTEFNVLKTEKNYNNEIGLPKTL---LRLTAEHEACV 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +     G  +      +   G  TN+G  HI+   +++A   AK  L    LP+ S A
Sbjct: 173 VEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVA 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+  DD Y K +   A     + ++ G +         +    +  + T     + FD  
Sbjct: 232 ILNEDDPYVKAMDSLAKG---KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  VY+AL A      +GI S  + + L +    P R E V        I  D Y
Sbjct: 289 LPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFED--IVILNDAY 346

Query: 363 AHTSNSLEMILKNIRTITSGRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               +S+   +K +  +   R I     +   G   ++  R I   +A +   +     D
Sbjct: 347 NANPSSMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGD 406

Query: 419 NPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    I  E    G+  F  K +   A   + ++  K DV++V G
Sbjct: 407 AAAF-----IAKEAKKAGLTTFRCKSHLEMANAYS-DIREKGDVILVKG 449


>gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
 gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
          Length = 460

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 172/467 (36%), Gaps = 58/467 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            +W    ++ VS+D+R IQAG ++V ++G   +GH F+ +A  +GA A++ + A      
Sbjct: 20  PEWGNIAVSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKGAAAVLWAEA------ 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC----- 137
             T   + P +VVD+T   L   A+R   +    ++ VTG++GK++    +  +      
Sbjct: 74  EGTPPESVPAIVVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKDMIAALLSSQYR 133

Query: 138 --QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             +  G  +  IG   T+                    L+      +  V +  S  G  
Sbjct: 134 VQKTEGNLNNHIGVPLTL--------------------LALEEGTDIAVVEMGMSGFGEI 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           +      +  A   TN+G  H+    +++    AK+ +   L   +   + + D+    E
Sbjct: 174 EQLTTIARPNAAVITNIGEAHLQELGSREGIAKAKLEILSGL-QGDGLFVYHGDEPLLAE 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++         V++ G      +      I       +  E        P+ G+  VYNA
Sbjct: 233 LVPSLP-LPQHVVTFGEGEDNDYYPTTVRIEAAGTSFVINELPRQTLFIPVLGKHHVYNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L A  +    G+    +   L +L V   R E V T  RG  +  D Y  +  S+   L 
Sbjct: 292 LAAIAVARFFGVSWENIAAALSRLQVTRMRTEVVKTK-RGFTVINDAYNASPTSMRAALM 350

Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNPRSEDPEKIR 429
            +  +    + I V G   +    +      I      ++ D         R        
Sbjct: 351 LLTELDGYRKKIAVLGDMLELGDKEVEFHQAIGEMLRPEMVDYVFTYGPLAR-------- 402

Query: 430 AEIIHGIPGFIEKG-----NRIEAIRTAI-EMLNKQDVLVV-AGKGH 469
             I      F ++G     +   A+  A+  +    D++++ A +G 
Sbjct: 403 -HIATAATPFFDQGQVKAFDDKAALAEAVLSVATPDDIVLLKASRGM 448


>gi|242035159|ref|XP_002464974.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
 gi|241918828|gb|EER91972.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
          Length = 761

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 116/516 (22%), Positives = 224/516 (43%), Gaps = 42/516 (8%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+     ++  +  V  D+  + AG +FV + G   DG   + +A  +G
Sbjct: 231 LAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADKRG 287

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A A+V     +++   A       +++VD+    L +  + LY +   +  ++ VTGT G
Sbjct: 288 AVAVVADQDLNIEGTLA----CRALVIVDDILAALRVLPACLYRRPSTDMAVIGVTGTDG 343

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            ++    V+ + +  G+ +  +G        S+        +  PI   K ++ +   G 
Sbjct: 344 VTTTTHLVKAMYEAMGVRTGLVGVLGAYAFGSNKLDARPDASSDPIAAQKLMATMLHNGT 403

Query: 183 THVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240
             V +E ++ G+    +   I       TN+     +   T + Y ++   LF  ++ P 
Sbjct: 404 EAVVLETATDGIPPSGVGSEIDYDIAVLTNVRHTDGEDGMTYEQYMSSMASLFSRMVDPD 463

Query: 241 ESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               ++  DD  +     +  H+      S   +   +H  K      + +V +      
Sbjct: 464 RHRKVVNIDDPCAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGI 523

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G   +YN L    + IA+G     ++  +E++  +PGR E +      G + 
Sbjct: 524 LEISSGLLGRENIYNILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELIDEEQAFG-VI 582

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VD+A T  +L  +L  +R +   RI+ V GC G++++GKRP+M KIA D +D+ ++T DN
Sbjct: 583 VDHARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSDN 642

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------------------AIEMLN 457
           P +EDP  I  +++ G+   +E+  +  A                         A+ M  
Sbjct: 643 PANEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGE 702

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + DV+V+ GKG++T  I  +  +    D +  RE L
Sbjct: 703 QGDVVVITGKGNDTYQIEGDKSE-FFDDREECREAL 737


>gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS678]
          Length = 460

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 97/406 (23%), Positives = 161/406 (39%), Gaps = 35/406 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +      +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGVYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G  +            TP+  +    L      G  H      + 
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFEL------GANHKGEIDYTS 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL       ++       N+G  H++   +Q     AK  +F  L   +  AII ADDA+
Sbjct: 172 GL-------VRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHL-QADGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPL 306
           +  +  +A        S    G       V A  +K       +  ++  G+    + PL
Sbjct: 224 ADFMSVKARPYKQLSFSQ-QDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G  QV NAL AA +CIA+G+    + E L +L  V GR +         R+  D Y   
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGR--VRLIDDSYNAN 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
             S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 341 PVSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|257866935|ref|ZP_05646588.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257873268|ref|ZP_05652921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
 gi|257800991|gb|EEV29921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257807432|gb|EEV36254.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
          Length = 506

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 193/502 (38%), Gaps = 29/502 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+ + K+     + +   P +  +     +S DSR   A  +F    G       ++  
Sbjct: 16  LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAA 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG +  +  + Y               ++V + R+ +++ A   YG   E +  + +
Sbjct: 74  AIDQGIQCYISETPYDNFATYG--------IIVTDIRETMAVIAQAFYGHPQEQLVTIGI 125

Query: 121 TGTSGKSSVASFVQQICQRS-GLSSFQIG--PTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK+S A F + I   S G           S       +  LTTP  + L K ++  
Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            + G+TH+ +E SS      R+ GI    G+F N+  DHI    H T   Y   K  L  
Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVEHPTYDDYLYCKRELIR 245

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTIS 294
                    I+     +   + +         ++ G       +++              
Sbjct: 246 N----SKQMILNRQSDHYHLLRETCEVHQVPYITYGRSDADYVVQEGADLKGFALSAASD 301

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V     ++   + G F   NA  A       G       + L  + +       V     
Sbjct: 302 VLQVSGEYQLGILGSFNHENAAAAILAACLAGASREDAQKVLPTVIIPG--RMIVLEKEN 359

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  + VDYAH   S + + +  R +   GR++ V G  G + Q +R  MG+   + AD  
Sbjct: 360 GAVMIVDYAHNYLSFQSLSELARQLRPEGRLLFVTGSAGGKAQSRRADMGRALGEYADKV 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +T D+P  E+   I  EI   I       I + +R +A+++AI   + +D++++AGKG 
Sbjct: 420 YLTSDDPDFEEASAIAKEIAAAITNPEVAIIHEMDRAQAVKSAIADADSKDIVIIAGKGA 479

Query: 470 ETVHIVTNGEKKMSVDCDIIRE 491
           E    V   +     D  + ++
Sbjct: 480 EQYLKVAGKKVPYIGDLTLAQQ 501


>gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus
           cereus Q1]
 gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus Q1]
 gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 458

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 95/474 (20%), Positives = 177/474 (37%), Gaps = 56/474 (11%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +        
Sbjct: 18  LAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLWMKDV--- 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137
              A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +    
Sbjct: 75  ---ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATK 131

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
               +  G  +  IG   TI +  ++                      V  + +  SS G
Sbjct: 132 FKVQKTEGNFNNHIGLPLTILNLEENTE--------------------VAVLEMGMSSRG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +      +  A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D   
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPL 229

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                   N     ++ G  +    +   V          ++ E ++  F  P+ G+  V
Sbjct: 230 LTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348

Query: 373 LKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +      +V         D++      +GK+        + T          K+
Sbjct: 349 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--------YGKL 400

Query: 429 RAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
            A+I  G     P    K   N+ E ++    +++ +DV+++ A +G +   ++
Sbjct: 401 GAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLIKASRGMKLEEVI 454


>gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
 gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
          Length = 458

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGK 467
            T          K+ A+I  G     P    K   N+ E ++    +++ +DV++V A +
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASR 446

Query: 468 GHETVHIV 475
           G +   ++
Sbjct: 447 GMKLEEVI 454


>gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
 gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
          Length = 452

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 101/463 (21%), Positives = 175/463 (37%), Gaps = 40/463 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +++             K  ++S+D+R I++G++FVA+ G+  DGH FI  AI +GA  
Sbjct: 6   LSQVVEATQGTSAHTDNIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGATG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    +++            + VDNT       A     +    ++A+TG+SGK++  
Sbjct: 66  AIVEKGRAVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  +           G    +    ++       P  L   L   +      V +   
Sbjct: 118 EMVAAVL----------GTEFNVLKTEKNYNNEIGLPKTL---LRLTAEHEACVVEMGMR 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  +      +   G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD
Sbjct: 165 GLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y K +   A     + ++ G +         +    +  + T     + FD   P+ GE
Sbjct: 224 PYVKAMDSLAKG---KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGE 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             VY+AL A      +GI S  + + L +    P R E V        I  D Y    +S
Sbjct: 281 HNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFED--IVILNDAYNANPSS 338

Query: 369 LEMILKNIRTITSGRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   +K +  +   R I     +   G   ++  R I   +A +   +     D      
Sbjct: 339 MAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAF-- 396

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  E    G+  F  K +   A   + ++  K DV++V G
Sbjct: 397 ---IAKEAKKAGLTAFRCKSHLEMANAYS-DIREKGDVILVKG 435


>gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 481

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 187/484 (38%), Gaps = 51/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   
Sbjct: 29  TVKNIAEMVKGTLTNP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQAFEA 87

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++   +            N  +++VD+T   L   A     +    ++ VTG++GK
Sbjct: 88  GVAAVLWDRSVP------NPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGK 141

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++    +  +        +  G  +  IG   T+ +  ++                    
Sbjct: 142 TTTKDMIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTE------------------ 183

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  + +  S+ G            A   TN+G  H+    +++    AK+ +   L  
Sbjct: 184 --IAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL-K 240

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++   I   D+     +++ A++   +    G    +  L+ V         TI  +G +
Sbjct: 241 EDGVLIYIGDEP----LLQNAYSCQTKTYGTGAHNDYQ-LQDVSQSEEGTHFTI--KGIE 293

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  V NA+ A       GI      + L  L V   R E + T+S    I 
Sbjct: 294 NTFFIPILGKHNVMNAMAAIAAGAYFGITPEGAAKGLSGLKVTGMRLELIKTDSGLSIIN 353

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
             Y  +  S++  ++   ++   G+ ++V G     GD ++      G  I+ D  D   
Sbjct: 354 DAYNASPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVF 413

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVH 473
                        ++      +  + EK + ++A++   E  +K D+++  A +G +   
Sbjct: 414 TYGKLGAFIAEGALKQFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEE 470

Query: 474 IVTN 477
           IV +
Sbjct: 471 IVKD 474


>gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
 gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
          Length = 458

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGK 467
            T          K+ A+I  G     P    K   N+ E ++    +++ +DV++V A +
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASR 446

Query: 468 GHETVHIV 475
           G +   ++
Sbjct: 447 GMKLEEVI 454


>gi|315633813|ref|ZP_07889102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477063|gb|EFU67806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 459

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 142/412 (34%), Gaps = 22/412 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L    +      +  VS+DSR      +F A+ G   D H ++ +A  
Sbjct: 1   MITLSLSQIASILEAQLIGDGNVTVENVSTDSRKAVNNGLFFALKGENFDAHDYVMKAAE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A VV               N   L+V ++R  L   A  L  K    ++A+TG+SG
Sbjct: 61  QGCVAAVVEHPTE---------GNIAQLIVKDSRLALGQLAKWLREKINPKVVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q+  +    +    T  +F  D  +         K    +   G  H+
Sbjct: 112 KTTVKEMTASILQQCAVDFDDV--LFTQGNFNNDIGVPLTLLRLTEKHKFAVIELGANHI 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              A +  L Q              N+   H++   +      AK  +F  L      AI
Sbjct: 170 GEIAYTTALAQ-------PDVALVNNVMAAHLEGFGSLDGVATAKGEIFRGLTHH-GVAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I     Y ++  K       +  S        + + +          +     +     P
Sbjct: 222 INQAHNYQQKWQKEIGQHEVQYFSYDNPQADFYAEHIQFSEQGASFVLHTPQGNVQIDSP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V + LE   +V GR   +        +   Y   
Sbjct: 282 YLGEHNVSNALAATALAMNVGATLAQVKKGLETPSLVKGRLFPIHPCDNLLLLDDTYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIA-LDLADIAI 414
             S++  +  ++   + R+ VV   G   D        +G+ A     D+ I
Sbjct: 342 VGSMKSAISVLQKYPAFRVFVVGDMGELGDNTPLCHQEVGEFAWAAKLDLVI 393


>gi|312869241|ref|ZP_07729413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095262|gb|EFQ53534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 516

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 128/519 (24%), Positives = 207/519 (39%), Gaps = 59/519 (11%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIV 72
            L        +     V+ DSR + AG +F    GN      F+P+    A  QGA A V
Sbjct: 16  HLLDHTKNLTDFTATSVAYDSRKVTAGTLFFC-KGN------FLPKYLTMAKGQGAVAYV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
               YS          + P ++V + +K ++L  +  YG   + +  +A+TGT GK++ A
Sbjct: 69  AEQEYSE-------GGDLPAIIVKDEQKAMALLGAAFYGFPQDELTIIAITGTKGKTTTA 121

Query: 131 SFVQQICQRSGLSSFQIGPT--STISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHV 185
                +  R+      +  T    + +   D      TTP  + L   +      G+TH+
Sbjct: 122 YMADHVLGRATDHHVALFSTLDRVLGNGPDDRFKSDLTTPESLDLFHDMRAAVDNGMTHL 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESP 243
            +E SS    +HR  G+    G F N+  DHI    H T   Y + K    E+LL     
Sbjct: 182 VMEVSSQAYKKHRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSRV 237

Query: 244 AIIYADDAYSKEVM--KRAHNAGCRVLSVGYQGK----------FIHLKKVCAIHNKQQV 291
            +I A+ A   +V    +A      +      G               +      ++ + 
Sbjct: 238 CLINAETADLADVYYTAKATTQPEDIYLFARHGAQVQLPEGAAIDFEYRNDLEDLHESEF 297

Query: 292 TISVE-------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            ++         G    +   +PG++   NA+ A       G  +      L+ +H + G
Sbjct: 298 ELAACTPKAERLGLQRRYKTSVPGDYNEGNAVAAIISTALAGATAEDAAATLDHVH-IKG 356

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           R E   T   G  IY+DYAH   SL+ +L    R   +G++ VV G  GD+   +R   G
Sbjct: 357 RMEMQKTRQHG-TIYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFG 415

Query: 404 KI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLN 457
           K  + +  D  I+T D+P  EDP KI  EI   I            +R  AI+ AI+   
Sbjct: 416 KALSEEHPDQIILTTDDPGFEDPMKIAREINSHIDHDQVGEIQYIMDRPTAIKAAIDSSG 475

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             D++V+AGKG +    +   +   + D  I  + +  I
Sbjct: 476 NGDIVVLAGKGEDPYQKINGVDTPYATDSKIAADYIHEI 514


>gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Micromonospora sp. L5]
 gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora sp. L5]
          Length = 469

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 161/453 (35%), Gaps = 43/453 (9%)

Query: 26  RERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            + ++   V  DSR +  G +FVA  G + DGH +   AI+ GA A++ +          
Sbjct: 22  PDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGAISAGAVAVLGTREV------- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143
                 P+++V +    +   A  +  + P   ++ +TG+SGK++    + Q+  R G +
Sbjct: 75  ---PGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSGKTTTKDLIAQLAVRLGPT 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  +            TP   YL              +   A   G  ++  D + 
Sbjct: 132 VAPPGSFNNELGHPYTALQATPETRYL-------------VMEKGARGVGHVRYLCDVVP 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+G  H+    + +    AK  L E L P +  A++ ADD     +  R    
Sbjct: 179 PRISVVLNVGVAHLGEFGSVETIALAKGELVEAL-PDDGLAVLNADDPRVDAMASRTRAR 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R            +        +   T+            L G  QV N+L AA +  
Sbjct: 238 VVR-YGESEHADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTGRHQVSNSLAAAAVGR 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS- 381
            +G+    +   L +L +V  R   V     G  +  D Y     S  + L+ + ++   
Sbjct: 297 ELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVIDDSYNANPASTGVALRALASMRGE 356

Query: 382 GRIIVVFGCGG---DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           GR + V G      D +      +G++A +   D  +V        +P     E    + 
Sbjct: 357 GRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVG------EPAAPIHEGATAVG 410

Query: 438 GF----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +    +   ++  A+      L   DV++V G
Sbjct: 411 NWGGESVLLTDQAAAVEVLRSELRPGDVVLVKG 443


>gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
 gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
          Length = 454

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 170/455 (37%), Gaps = 32/455 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q  I         I+ VS+DSR I    +F+A+ G + D H F  Q +  GA+A++V 
Sbjct: 12  ITQGQIESAPDTNVLISSVSTDSRKIAENCLFIALKGERFDAHDFAQQVVVTGAKALLVE 71

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              ++         + P ++V ++R  +   A+ +  +    I+ +TG+SGK+SV     
Sbjct: 72  RKLNV---------DCPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGSSGKTSVKEMTA 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I    G + +  G          +       P+ L +     +      + + A+    
Sbjct: 123 SILSERGKTLYTAG----------NLNNDIGVPLTLFRL---TNDDEFAVIEMGANHPNE 169

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  + +K  A    NL   H+    + +    AK  +++  +P+E  AI+  D +YS+
Sbjct: 170 IAYTTNIVKPEAALVNNLFAAHLAGFGSPEGVATAKGEIYQG-VPEEGTAIVNLD-SYSE 227

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +   +                  +   +          +       D   PLPG   + N
Sbjct: 228 KWQFQPRQTVWYYSLTSQAKADFYPSDIQVKQLTTDFVLHTPVGSVDITLPLPGRHNIAN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A+ L I++G     +   + K   VPGR   V  +     +   Y     S+   ++
Sbjct: 288 VLAASALAISVGASLEDIKNGIAKTQAVPGRLYPVRLSEHKVVLDDTYNANDGSMIAAIQ 347

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +  +   RI+VV   G   D  +       +A   A +  V      SE    + ++  
Sbjct: 348 VLEKMPGYRILVVGDMGELGDYAEDCHQRVGVAAKQAGLDKVFSVGQLSE----LISQFS 403

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                F  K +    +   I +  ++DV+ +  KG
Sbjct: 404 ECGEHFTVKADL---LTRLIPLAQQKDVVSILVKG 435


>gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 469

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 163/453 (35%), Gaps = 43/453 (9%)

Query: 26  RERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            + ++   V  DSR +  G +FVA  G + DGH +   AI+ GA A++ +          
Sbjct: 22  PDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGAISAGAVAVLGTREV------- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143
              S  P+++V +    +   A  +  + P   ++ +TG+SGK++    + Q+  R G +
Sbjct: 75  ---SGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSGKTTTKDLIAQLAVRLGPT 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  +            TP   YL              +   A   G  ++  D + 
Sbjct: 132 VAPPGSFNNELGHPYTALQATPETRYL-------------VMEKGARGVGHVRYLCDVVP 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+G  H+    + +    AK  L E L P +  A++ ADD     +  R    
Sbjct: 179 PRISVVLNVGVAHLGEFGSVETIALAKGELVEAL-PSDGLAVLNADDPRVDAMASRTRAR 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R      +     +        +   T+            L G  QV N+L AA +  
Sbjct: 238 VVR-YGESERADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTGRHQVSNSLAAAAVGR 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS- 381
            +G+    +   L +L +V  R   V     G  +  D Y     S  + L+ + ++   
Sbjct: 297 ELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVIDDSYNANPASTGVALRALASMRGE 356

Query: 382 GRIIVVFGCGG---DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           GR + V G      D +      +G++A +   D  +V        +P     E    + 
Sbjct: 357 GRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVG------EPAAPIHEGATAVG 410

Query: 438 GF----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +    +   ++  A+      L   DV++V G
Sbjct: 411 NWGGESVLLTDQAAAVEVLRSELRPGDVVLVKG 443


>gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 458

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 96/474 (20%), Positives = 177/474 (37%), Gaps = 56/474 (11%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +        
Sbjct: 18  LAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLWMKDV--- 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137
              A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +    
Sbjct: 75  ---ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATK 131

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
               +  G  +  IG   TI +  ++                      V  + +  SS G
Sbjct: 132 FKVQKTEGNFNNHIGLPLTILNLEENTE--------------------VAVLEMGMSSRG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +      +  A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D   
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPL 229

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                   N     ++ G  +    +   V          ++ E ++  F  P+ G+  V
Sbjct: 230 LTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348

Query: 373 LKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +      +V         D++      +GK+        + T          K+
Sbjct: 349 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--------YGKL 400

Query: 429 RAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
            A+I  G     P    K   N+ E ++    +++ +DV++V A +G +   ++
Sbjct: 401 GAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVI 454


>gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 458

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 99/464 (21%), Positives = 172/464 (37%), Gaps = 30/464 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+  +      + P+    R   +V +D+R +Q G +FVA+ G + DGH F+ QA+A+
Sbjct: 5   TVKEVEQATGARLLAPVTGGNRTFLQVYTDTRSLQKGGLFVALKGERFDGHDFVLQAVAK 64

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VV  A   + F+A      P+  V +T +     A     +    ++AVTG+ GK
Sbjct: 65  GAAGVVV--AAREETFAALP---VPVFAVPDTLRAYQALARFHRRRFALPVIAVTGSVGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    +  +  +      ++    T  +F                 L   +      V 
Sbjct: 120 TSTRQMIASVLSQ------KLRVWQTEKNF-------NNEIGLPKTLLGLTAEHEACVVE 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G         +   G  TN+G+ HI+   +Q+    AK  L   L P    A++
Sbjct: 167 MGMRGPGQIAELAAIAEPTIGVVTNVGKSHIELLGSQENIAKAKGELPAAL-PATGTAVL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD     V   A     +V+  G   G  +   ++               + F    P
Sbjct: 226 NQDD---WRVAAMAKLCRGKVIGYGTSVGAAVRAGEIQTDDKGLSFICRCFDQTFRATVP 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+  VYNAL A      +G+    + + L     VP R E V        I   Y   
Sbjct: 283 VLGKHHVYNALAAVATARLLGLSETQMCKGLAAYAGVPMREELVHVGPYTF-INDAYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+E  ++ +  +   + I V G     GD    +  ++GK     +  A++T   P S
Sbjct: 342 PASMEEAVQTLAAVKKEQKIAVLGGMLELGDWTVREHELLGKKIAAASITALITLGTPAS 401

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              E   A    G+    +  +         ++L    V+++ G
Sbjct: 402 YIAE---AAEKAGMKAVYQVSDHQAGAAVLRDLLEPGAVVLLKG 442


>gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
 gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
          Length = 455

 Score =  236 bits (602), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 91/406 (22%), Positives = 156/406 (38%), Gaps = 28/406 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L++Q     +   + +I  V SDSR I    +FVA+ G K DGH F   A+  GA A++V
Sbjct: 8   LLSQRLNGRLIGSDTEILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLALENGASALLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S   +L         + P L+V +T+K +    + L        +A+TG++GK+SV   V
Sbjct: 68  SRELAL---------DIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKTSVKEMV 118

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I  +            T  +F  +  +           L     +      + A+  G
Sbjct: 119 ASILSQ------HHKVLYTAGNFNNEIGVP-------LTLLRLEGDEEYGVFELGANHLG 165

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +    +K       N+   H++   + +    AK  +F  L   +  A+I  DD ++
Sbjct: 166 EIDYTSSLVKPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFNHL-SADGIAVINLDDPFA 224

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +   A        ++  Q      + V     + + T++          PL G  QV 
Sbjct: 225 DVMRGAASQFTQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVS 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NAL A  +C+++G+    VL  L+ +  V GR           RI  D Y     S+   
Sbjct: 285 NALAATAICLSLGLSLEEVLSGLKLVEPVKGRMLPHELGR--VRIIDDSYNANPASVGAA 342

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVT 416
           +  ++ I   R +V+   G   D        +G+ A      A+ T
Sbjct: 343 IDWLQEIDGFRCLVLGDLGELGDNASLLHSELGEYAKKQGIDALFT 388


>gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 458

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN  +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMING-TRLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGK 467
            T          K+ A+I  G     P    K   N+ E ++    +++ +DV++V A +
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASR 446

Query: 468 GHETVHIV 475
           G +   ++
Sbjct: 447 GMKLEEVI 454


>gi|229820901|ref|YP_002882427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
 gi|229566814|gb|ACQ80665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
          Length = 536

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 153/501 (30%), Positives = 240/501 (47%), Gaps = 49/501 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            ++ D+R +  G IF A+ G    G  F   A A GA A++  ++ +    +A I     
Sbjct: 40  GITLDNRGLAPGEIFAALPGAHTHGARFAAAAAAAGASAVLTDASGAAAAEAAGIP---- 95

Query: 92  ILVVDNT------------RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
            ++V +             R+ ++  A+ +YG+  E +   AVTGT+GK++ +  +  + 
Sbjct: 96  -VLVADVDGSGDGAGRAEFREIVAAVAADVYGRPAERLRTFAVTGTNGKTTTSFLLAHLL 154

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     IG     I       RLTTP    L   L+++   GVT + +E SSH L+ 
Sbjct: 155 GLLGRRVGLIGTVELRIGDAVVPARLTTPEAPDLHALLAHMVEAGVTDLVMEVSSHALEL 214

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+D ++    +FT+L +DH+D+H   + Y+ AK  LF     +   A++  DD + + +
Sbjct: 215 HRVDPVRFDLAAFTHLTQDHLDFHGDLEHYYAAKASLFTP--ARARRAVVSVDDEWGRRL 272

Query: 257 MKRAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEF 310
              A  AG  V ++  +G         ++ V A  +    T++  G         +PG F
Sbjct: 273 AGDARAAGIDVATLATRGEHAAAAAWTVRDVVAGADAMSFTLTGPGDVALTTSLTMPGAF 332

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTS 366
            V NA +A    I  G+ +A V+E L         VPGR E VG   R     VD+AH +
Sbjct: 333 NVANAALALATAIEGGVPAADVVEALAAAGGLRVAVPGRMEVVGAEPRC---VVDFAHNT 389

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++ + L  +R  TSGR+ VV G  G+RD+GKRP MG+ A+  AD  IVTDD+P  EDP 
Sbjct: 390 DAVGIALAELRATTSGRLHVVLGATGERDRGKRPAMGEAAVLGADAVIVTDDDPHDEDPA 449

Query: 427 KIRAEIIHGIPGFIEKGN--------RIEAIR-----TAIEMLNKQDVLVVAGKGHETVH 473
           ++RAE++ G     E           R  A R      A+     +D ++VAG+GHET+ 
Sbjct: 450 QVRAEVLAGALRAAETARAAGRHVDVREVAPRSAAIAAAVAGAAPEDTVLVAGRGHETIQ 509

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            V  GE+    D   +R  L 
Sbjct: 510 EVA-GEELPLDDRVEVRAALA 529


>gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
 gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
          Length = 460

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 89/452 (19%), Positives = 171/452 (37%), Gaps = 28/452 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+  +S+DSR ++   +F+ + G K DG  F+  AI +GA A++ +    L +       
Sbjct: 24  KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAVITAR---LDNVECLKDF 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V+ T + L   AS    K     +AVTG+SGK++    + QI  +      +  
Sbjct: 81  SVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK------KYK 134

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  +F                  +   +  +  V +  +  G  +   +  +     
Sbjct: 135 VLKTEGNF-------NNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIAEPQVAV 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN+G  HI+   +++    AK  L E    +E+  ++ ADD    ++  +  +   R  
Sbjct: 188 FTNIGVAHIEKLGSRENILKAKTELIENF-KEENVIVLNADDDMLSKIPLQYSSKYYR-- 244

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G +   I    +       + T+  +    +    +PG   VYN+L A  + +  GI+
Sbjct: 245 -YGIKSGEIKACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAAICVGLEFGIN 303

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV- 387
              + E L+       R   +          V Y    +S++  L  +R + + R I V 
Sbjct: 304 VEDMAEALKDFQPGKMRLNIIKIGDIKIIDDV-YNANPDSMKAALSVLRDLPAKRKIAVL 362

Query: 388 ---FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
                 G    +  + I   +A    DI I + D  +    E     +            
Sbjct: 363 GDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVCGMKEN--NIFVCNT 420

Query: 445 RIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
             E      +++ + D ++V G +G +   IV
Sbjct: 421 NKEVNEILKDIIKEGDSILVKGSRGMKMEQIV 452


>gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 185/478 (38%), Gaps = 30/478 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + +L+  +         +     +++ I  +S+DSR ++   +F+ + G K DG  F+  
Sbjct: 1   MMELLIDEIVRATEG-KLIKGSLKDKVI-GISTDSRKVKKDELFIPLKGEKYDGEDFVKD 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI +GA A++ +    L++       +  ++ V+ T + L   AS    K     +AVTG
Sbjct: 59  AIDKGAIAVITAR---LENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++    + QI  +      +     T  +F                  +   +  +
Sbjct: 116 SSGKTTTKDMIAQILSK------KYKVLKTEGNF-------NNEIGLPLTIFNLEDTHQI 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +  S  G  +   +  +     FTN+G  HI+   +++    AK  L E    +E+
Sbjct: 163 AVVEMGMSGFGEIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENF-KEEN 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++ ADD    ++  +  +   R    G +   I    +       + T+  +  + + 
Sbjct: 222 VIVLNADDDMLSKIPLQYSSKYYR---YGIKSGEIKACDIEKGEKDIKYTLKYKNLEKEI 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   VYN+L A  + +  GI+   + E L+       R   +          V Y
Sbjct: 279 KLSIPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKRRLNIIEIGDIKIIDDV-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               +S++  L  +R + + R I V       G    +  + I   +A    DI I + D
Sbjct: 338 NANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGD 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
             +    E     +  G   F+   N  E      +++ + D ++V G +G +   IV
Sbjct: 398 MSKYIAEESKVCGM-KGNNIFVCNTN-EEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453


>gi|121535664|ref|ZP_01667469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305768|gb|EAX46705.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 492

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 195/467 (41%), Gaps = 33/467 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S  S  I+ GW+FVAI G   DG+ +  +A+  GA+A+V  +   L   +       P
Sbjct: 13  GISCHSGEIKPGWVFVAIRGRAADGNAYAAEAVRHGAKAVVTDAPDRLPPLA------IP 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + VV + R+ L+  A+  Y       N++ VTG++GK++VA  ++ I + +G     IG 
Sbjct: 67  VAVVPDARQALAALAAHFYNHPSRSLNLVGVTGSNGKTTVALMLEHIFRTAGHLPGLIGT 126

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +   +  +RLTTP    L + L+ +   GVTH ++E S+ G++  R+D +    G 
Sbjct: 127 VRVNVGKISFPSRLTTPDAASLQRYLALMRDSGVTHAAMEVSAQGVEMSRVDHVTFSCGI 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D+H T   Y  AK R    L P  SP ++  DD + + +   A      V 
Sbjct: 187 LTNICADHLDFHHTFADYLAAKERFLTLLGP--SPLVVNRDDDHCRRMAALAGGPVIAVS 244

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTIS-------VEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G       +    A  +K ++T S       +         PL G   V NAL+AA  
Sbjct: 245 LTGPADVTAQILHTPAYGSKFRLTWSTLPGRQNIPAGQITVSLPLAGRHNVENALLAAAA 304

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  GI    +         V  R E       G  +  D A    S++ +   I T   
Sbjct: 305 GLLHGISPDEIAAAFSSFQGVERRLEIY--RCGGFTVIDDTALNPGSIDAVFATITTFRY 362

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADI----AIVT--------DDNPRSEDPEKIR 429
            R++VV    G R      +                IVT         D   +E+ +   
Sbjct: 363 RRLVVVNAIRGGRGAAINALNAITMARWQAALPFELIVTASADQVGPADTVTAEERQAFL 422

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK-GHETVHIV 475
            E+      F    +   AI++A++ L   D+LV+ G  G +T   V
Sbjct: 423 GELSRTGAAFSFYLDLQTAIQSALQRLYDGDLLVLLGAQGMDTGRQV 469


>gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 461

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 89/452 (19%), Positives = 171/452 (37%), Gaps = 28/452 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+  +S+DSR ++   +F+ + G K DG  F+  AI +GA A++ +    L +       
Sbjct: 25  KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAVITAR---LDNVECLKDF 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ V+ T + L   AS    K     +AVTG+SGK++    + QI  +      +  
Sbjct: 82  SVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK------KYK 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  +F                  +   +  +  V +  +  G  +   +  +     
Sbjct: 136 VLKTEGNF-------NNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIAEPQVAV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN+G  HI+   +++    AK  L E    +E+  ++ ADD    ++  +  +   R  
Sbjct: 189 FTNIGVAHIEKLGSRENILKAKTELIENF-KEENVIVLNADDDMLSKIPLQYSSKYYR-- 245

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G +   I    +       + T+  +    +    +PG   VYN+L A  + +  GI+
Sbjct: 246 -YGIKSGEIKACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAAICVGLEFGIN 304

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV- 387
              + E L+       R   +          V Y    +S++  L  +R + + R I V 
Sbjct: 305 VEDMAEALKDFQPGKMRLNIIKIGDIKIIDDV-YNANPDSMKAALSVLRDLPAKRKIAVL 363

Query: 388 ---FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
                 G    +  + I   +A    DI I + D  +    E     +            
Sbjct: 364 GDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVCGMKEN--NIFVCNT 421

Query: 445 RIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
             E      +++ + D ++V G +G +   IV
Sbjct: 422 NKEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453


>gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 463

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 104/456 (22%), Positives = 175/456 (38%), Gaps = 38/456 (8%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                +  +  +  VS+DSR ++AG +FV + G + DGH FI QA+  GA A +     +
Sbjct: 14  GDLTPERADGVVTGVSTDSRSLRAGDLFVPLRGPRFDGHDFIAQAVQSGAVACLSEEVIA 73

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                       P++ V +T + L   A+ +       ++AVTG+SGK++    +  I  
Sbjct: 74  GLP--------VPVIRVTDTLRALGDLAAAVRQAFDGPVVAVTGSSGKTTTKEMLAGILA 125

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G          T  +F          P  L +  +         + +  S+ G     
Sbjct: 126 LRGE------GLKTEGNF----NNLIGLPHTLFRLEA---DHHWAVLELGMSARGEIARL 172

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +  +   G  TN+G  H++     Q    AK  LF  L P    A+I  DD     V++
Sbjct: 173 AEISRPDIGVITNVGPAHLETLHNLQGVARAKGELFAAL-PAGGTAVINGDDP---RVLQ 228

Query: 259 RAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                G R L  G         + +    +     + + G+ +     +PG + V+NAL 
Sbjct: 229 LPVANGVRRLIYGCGSDAEVRAEDIAVDGHGTHFCLLLAGESWPVHLSVPGRYNVHNALA 288

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA    A+ +  A ++E LE      GR   V   + G  +  D Y     +++  L  +
Sbjct: 289 AAAAAHALKVGGAQIVEGLEAFRSCAGRMA-VAELASGATLLEDFYNANPLAVKAALSAL 347

Query: 377 RTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
             +   GR I V G     GD         G  A    D+ I+  +  R+ED      + 
Sbjct: 348 DEMPGSGRRIAVLGDMLELGDAASEMHRQTGLDASKCVDLLILLGE--RAEDTAAGARQ- 404

Query: 433 IHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             G+P        +  EA++    +L   D ++V G
Sbjct: 405 -GGMPPQSVWVVKSHDEAVQLLAGILRPGDRVLVKG 439


>gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 462

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/404 (23%), Positives = 165/404 (40%), Gaps = 24/404 (5%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q     +  ++  I  VS+DSR+I A  +F+A+ G + DGH F+  AI  GA A++V
Sbjct: 8   VLAQHLNGTLHGQDGVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTAIKNGAVALLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                   F+A    +   +VV +T+K +    + +        +A+TG++GK+SV   +
Sbjct: 68  DHLLVDHPFAA----DIAQIVVVDTQKAMGKMGAFVRQTVAPICVALTGSNGKTSVKEML 123

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I  +     F  G          +       P+ L + LS     GV    + A+  G
Sbjct: 124 ATILSQHHQVLFTAG----------NFNNEIGVPLTLLR-LSEGDEYGV--FELGANHRG 170

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +    +        N+G  H++   + +    AK  +F  L P +  AII ADD ++
Sbjct: 171 EIDYTSSLVLPQVALVNNVGNAHLEGFGSLEGVAQAKSEIFNHLTP-DGTAIINADDKFA 229

Query: 254 KEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             +++++        S  +           V   +   + T++ +G+      PL G  Q
Sbjct: 230 DFMLQQSQGRKHLRFSREMNVDADVTATDIVADANGCYRFTLTFDGQQEVVQLPLAGLHQ 289

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V NAL AA +CIA+ I    + +    L  V GR +          +  D Y     S+ 
Sbjct: 290 VSNALAAASMCIALDISLYDIAQGFALLKPVKGRMQPHDLGR--VLLIDDSYNANPTSVS 347

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + N      G   +V G  G+      P+   I L + + AI
Sbjct: 348 AAI-NWLQQRDGYRCLVLGDLGELGDNAAPLHASIGLQVKNAAI 390


>gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 481

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 187/484 (38%), Gaps = 51/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   
Sbjct: 29  TVKNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEA 87

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++   +            N  +++VD+T   L   A     +    ++ VTG++GK
Sbjct: 88  GVAAVLWDRSVP------NPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGK 141

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++    +  +        +  G  +  IG   T+ +  ++                    
Sbjct: 142 TTTKDMIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTE------------------ 183

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  + +  S+ G            A   TN+G  H+    +++    AK+ +   L  
Sbjct: 184 --IAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL-K 240

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++   I   D+     +++ A++   +    G    +  L+ V         TI  +G +
Sbjct: 241 EDGVLIYIGDEP----LLQNAYSCQTKTYGTGTHNDYQ-LQDVSQSEEGTHFTI--KGIE 293

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  V NA+ A       GI      + L  L V   R E + T+S    I 
Sbjct: 294 NTFFIPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIIN 353

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
             Y  +  S++  ++   ++   G+ ++V G     GD ++      G  I+ D  D   
Sbjct: 354 DAYNASPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVF 413

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVH 473
                        ++      +  + EK + ++A++   E  +K D+++  A +G +   
Sbjct: 414 TYGKLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEE 470

Query: 474 IVTN 477
           IV +
Sbjct: 471 IVKD 474


>gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC BAA-2158]
          Length = 452

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 158/405 (39%), Gaps = 26/405 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +R I +V++D+R    G +F+A+ G + D H F+  AI  G  A++VS
Sbjct: 9   VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               ++          P +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +      T  +F  D  +         +    +   G  H    A + GL
Sbjct: 120 AILRECGETLY------TTGNFNNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTSGL 173

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++  +    NL   H++   +      AK  +F  L P    AII +D     
Sbjct: 174 -------VRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINSDSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S        +   V         T+     D D + PLPG   + N
Sbjct: 226 HWQQALHAKTIWRFSPEQADSDFYAANVTISAQGTHFTLHSPQGDVDVILPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +++G   + V + L  L  VPGR   +  ++    +   Y     S+    +
Sbjct: 286 ALAASALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +   R+++V      G +  +  R +   I     D  + T
Sbjct: 346 VLAGMPGYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLST 390


>gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
 gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
          Length = 468

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 162/449 (36%), Gaps = 24/449 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R ++AG +FVA+ G   DG  F  +A+ +GA A++V         +A   ++  +
Sbjct: 31  ITTDTRKVEAGDLFVALRGENFDGTAFAAEALERGAAAVLVDQKTPASVLAALNAAHGGV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV ++T +     A     K    ++A+TG++GK++       +    G           
Sbjct: 91  LVAEDTLRAYQDIAHAWRMKFNIPVVAITGSNGKTTTKDLTAAVLSGRGKV--------- 141

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +               LS         V +     G         +   G  TN+
Sbjct: 142 ----CRTAANYNNEVGLPLTLLSITPEDTAAVVEIGMRGMGQIAALAPIAEPSIGIVTNV 197

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++   + +    AK  L    +P     I+ ADD     +   A + G RV++ G 
Sbjct: 198 CEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVAGMRSSAAD-GVRVMTYGI 255

Query: 273 Q-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                +  + +  + +  +  ++  G+  ++   LPG   V NAL A      +G+    
Sbjct: 256 SAAADVRAEALQCMADGSRFMVTWGGERHEYAISLPGRHNVSNALAALAAGFVLGMTPQE 315

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + E L  L     R+E     +    I   Y  + +S+   L+    +  GR + V G  
Sbjct: 316 MQEGLTHLTAEKMRYEVHQVGAW-TLINDAYNASPSSMRASLETTAALYPGRRVAVLGDM 374

Query: 392 GDRDQGKRPIMGKIALDLADI---AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            +           +   +A++    +VT    R        AE   G P      +  +A
Sbjct: 375 LELGTAAEAAHRDVGRRVAELGFAMVVT--YGRQAQWTHETAE-AAGCPDCCHAASHADA 431

Query: 449 IRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                  L   D ++  G +G     I+ 
Sbjct: 432 AAYLRRHLMDGDTVLFKGSRGMRMEQIIA 460


>gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
 gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
          Length = 452

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 102/463 (22%), Positives = 175/463 (37%), Gaps = 40/463 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +++             K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA  
Sbjct: 6   LSQVLEATKGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKGATG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    S++            + VDNT       A     +    ++A+TG+SGK++  
Sbjct: 66  AIVEKGRSVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  +           G    +    ++       P  L   L   +      V +   
Sbjct: 118 EMVAAVL----------GTEFNVLKTEKNFNNEIGLPKTL---LRLTAEHEACVVEMGMR 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  +      +   G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD
Sbjct: 165 GLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y K + + A     + ++ G +         +    +  + T     + FD   P+ GE
Sbjct: 224 PYVKAMDRLAKG---KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGE 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             VY+AL A      +GI S  + + L +    P R E V        I  D Y    +S
Sbjct: 281 HNVYDALAAIVAGRVLGIKSNTIRKGLSEFSGTPMRQEIVPFED--IVILNDAYNANPSS 338

Query: 369 LEMILKNIRTITSGRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   +K +  +   R I     +   G   ++  R I   +A +   +     D      
Sbjct: 339 MAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAF-- 396

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  E    G+  F    +   A   + ++  K DV++V G
Sbjct: 397 ---IAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILVKG 435


>gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli]
          Length = 452

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALTAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
 gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
          Length = 453

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/474 (20%), Positives = 172/474 (36%), Gaps = 44/474 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I+     L + L+   +   + +I+ V++D+R I  G +FVA+ G K D H F   A+ 
Sbjct: 1   MIHVSLQTLADALNA-ELIGTDTQIDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVK 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G+ A++VS           +  + P LVV +TR  L      +  + P  ++ +TG+SG
Sbjct: 60  AGSGALLVSK---------RLPVDVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I +  G   +      T  +F  D  +           L   +      +
Sbjct: 111 KTSVKEMTAAILRECGNVLY------TAGNFNNDIGVPL-------TLLRLTAEHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +       NL   H++   +      AK  +F+ L P+   A+
Sbjct: 158 EMGANHAGEIAYTTALARPETALVNNLSAAHLEGFGSLAGVARAKGEIFDGL-PENGIAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I AD+        + +       S  + +G       V         T+       D   
Sbjct: 217 INADNNDWANWQHKLNGKTVWRFSPTFGEGIDFSATDVNISPLNTAFTLHSPQGSIDVSL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG   + NAL AA L +++G     V   L  L  V GR   +  +     +   Y  
Sbjct: 277 PVPGRHNIANALAAAALAMSVGASPENVRAGLATLQSVKGRLFPIVISEGKTLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              S+    + +  +   R++ V      G + +   R +   I     D       + R
Sbjct: 337 NVGSMTAAAQVLAEMPGYRVMAVGDMAELGAESEHCHRQVGEAIRDAGIDKVFSIGHDSR 396

Query: 422 S-----------EDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                       ED   + A +      H +   + KG+R  A+   +  L + 
Sbjct: 397 IISDVSGCGEHLEDKAALTARLTSLLSEHAVITVLIKGSRSAAMEQVVRALQEN 450


>gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 457

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 183/479 (38%), Gaps = 49/479 (10%)

Query: 12  PELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            E+I+  S   +       I+ +S+DSR I+ G +F+ + G   +G +F+  A+  G  A
Sbjct: 6   KEIIDATSGKLLSGDINSTISGISTDSRTIKEGELFIPLKGENFNGEMFVEDALKIG-SA 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +  S  ++       R N P++ VDNT++ L   A     K     +AVTG++GK++  
Sbjct: 65  SLTESVNNV------GRYNKPVIFVDNTKEALHKIAKYYREKFQIPFIAVTGSNGKTTTK 118

Query: 131 SFVQ-------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
             +         + +  G  + +IG   TI                            + 
Sbjct: 119 DMIYDVLSMKYNVLKTQGNFNNEIGLPLTI--------------------FRLNKKHDMA 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  S  G  +   +        +TN+G  HI+   +++    AK  L E    +   
Sbjct: 159 IVEMGMSGFGEIRRLKNIADPNVAVYTNIGVAHIEKLGSRENILKAKSELVENF-KEGYT 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I+ ADD     ++K  +  G + ++ G     +    +       +  + ++G   D  
Sbjct: 218 VILNADDDM---LVKLTNKKGPQYITYGIDNGDVKAFDIEYKEESVKYKVIIDGYMMDVE 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             +PG+  VYN+L A  + I  G++   + + L +      R   +  +  G ++  D Y
Sbjct: 275 LNVPGKHNVYNSLAAICIGIKFGVNKEDMRKALAEFQPSAMRLNILDVS--GIKVINDAY 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
                S++  L  ++     R + V       G   D     +   +  +  D+ I   +
Sbjct: 333 NANPGSMKAALSVLKEYKDRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENIDVLITVGE 392

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                    I++ +   +   +   N +EA     +++   DV ++ G +G +   IV 
Sbjct: 393 FASKIAEGAIKSGMD--VENVMICKNNVEAYEKIKKIMRNNDVFLIKGSRGMKMEEIVK 449


>gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 458

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 104/469 (22%), Positives = 197/469 (42%), Gaps = 38/469 (8%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K     I +++   +   +R+  EVS+D+R ++   +FVA+ G K DGH F+P A+A+G
Sbjct: 2   RKILASTIARVTGGVLLGEDREFTEVSTDTRTLKPYALFVALHGEKLDGHEFVPDAVAKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VV   +S+         N   +VV +T + L   A     K    ++ +TG++GK+
Sbjct: 62  AAGVVVERPFSI---------NVTQIVVKDTFRALQELALYNRQKEGLKVIGITGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    V+ + ++      +    +T  +F  +  +           L++  +  V  V +
Sbjct: 113 TTKDLVKAVLRQ------KYNVCATEKNFNNELGVP-------LTLLNFDENTEVGIVEM 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                G         +   G  TN+G  H++  ++Q+    AK  L + L P +  AII 
Sbjct: 160 GMRGLGEIDALCQVARPDIGIITNIGEAHLELLKSQENIARAKSELIKNL-PGDGVAIIN 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +  Y KE++    N   +    G++   +++KK     +  +  I+    + +F  PL 
Sbjct: 219 GESPYIKEIVA---NIPVKKYFFGHRAGDLYIKKFSQEDDGLRF-ITAGILEEEFFLPLF 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A    + +G+   L+ + L ++ +   R E     S    I   Y  +  
Sbjct: 275 GVHNAVNALAAILTALTLGVRVPLIKKGLSEVELTGMRLEIQFIGSMKI-IKDYYNASPT 333

Query: 368 SLEMILKNIR-TITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           S+E  LK +  T   GR I V G      D +      +G++A  L    ++T   P++ 
Sbjct: 334 SMEAALKVLAGTGQKGRKIAVLGEMYELGDFETTGHRRVGEVASKLGVDFLIT-VGPKAR 392

Query: 424 DPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
           +       +  G+          + EA    +  L  +D +++ A +G 
Sbjct: 393 EIGN--GALAGGMSPQNIFHFATKEEAGSFLLNFLKPEDTVLLKASRGM 439


>gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
 gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
          Length = 459

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/467 (21%), Positives = 178/467 (38%), Gaps = 42/467 (8%)

Query: 11  FPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E++  +S   +Q    +    V++D+R I  G +F+A+ GN  DGH F+  A   GA 
Sbjct: 6   LGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPGELFIALQGNTFDGHHFLNDACINGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +++S   S +     +     +++V NT+  L   A     K    ++AVTG++GK++ 
Sbjct: 66  MVIISERSSFK----AVPRTVSVILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  +              ++  +     +            LS         V +  
Sbjct: 122 KNMIAAL-------------VASKLNVCATQKNFNNEIGLSLTLLSMTPETEACVVEMGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G             G  TN+G  HI    +Q+    AK  L E L P +  AI+  D
Sbjct: 169 RGLGQIAELCRIAAPTIGVVTNVGTSHIGILGSQENIAKAKGELIESL-PDKGIAILNED 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D Y   V++        ++  G  G +  H  ++   +N  +   +   + F     + G
Sbjct: 228 DPY---VIRMGDTFSGNIIGYGVNGNYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              VYNAL A      +GID   + + L +      R  F  T   G  +  D Y     
Sbjct: 285 IHNVYNALAATATARVLGIDVNRIQKALSEFLPGAQRQFF--TEINGVTVIDDSYNANPL 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+EM    +R +      +V G     G++++     +GKIA ++    ++T        
Sbjct: 343 SMEMAFHAMRQVNGKHYFLVLGDMGELGEKEEQFHYELGKIAANIGFDGMIT-------- 394

Query: 425 PEKIRAEII-----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             K+   I       G    +E     +A +   +M+   DV++V G
Sbjct: 395 VGKLSRHIAMGARDAGKTNIMECTTCEDAWQRLQKMIQSGDVVLVKG 441


>gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
 gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC 49946]
 gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
          Length = 452

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 158/405 (39%), Gaps = 26/405 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +R I +V++D+R    G +F+A+ G + D H F+  AI  G  A++VS
Sbjct: 9   VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               ++          P +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +      T  +F  D  +         +    +   G  H    A + GL
Sbjct: 120 AILRECGETLY------TTGNFNNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTSGL 173

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++  +    NL   H++   +      AK  +F  L P    AII +D     
Sbjct: 174 -------VRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINSDSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S        +   V         T+     D D + PLPG   + N
Sbjct: 226 HWQQALHAKTVWRFSPEQADSDFYAANVTISAQGTHFTLHSPLGDVDVILPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +++G   + V + L  L  VPGR   +  ++    +   Y     S+    +
Sbjct: 286 ALAASALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +   R+++V      G +  +  R +   I     D  + T
Sbjct: 346 VLAGMPGYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLST 390


>gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Filifactor alocis ATCC 35896]
          Length = 452

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 180/471 (38%), Gaps = 46/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L +    E    + +    + E  I  +++DSR ++ G +F+AI G   DG+ F+  A+ 
Sbjct: 4   LKFSQIVEWTEGVVLGDSMFSE-SIYSITTDSRKVKQGDLFIAIKGEHFDGNHFVDMALD 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            GA A++ S           I   +P ++ V +T K L   AS         ++++TG+S
Sbjct: 63  NGAVAVLSS-----------ISHKSPRVITVPDTVKALGKLASGYRDMLDIPVISITGSS 111

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +            Q     T  +F  +  +           L+      V  
Sbjct: 112 GKTTTKDMIFYALNS------QCNAYRTEGNFNNEIGMP-------LTILNSDEEHDVMI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  SS G  ++     K   G  TN+G  H++   +Q+  F AKM +    + ++   
Sbjct: 159 LEMGMSSLGEIEYLCSIAKPNIGVITNIGTAHLEQLGSQEKIFEAKMEI-TSFMHEKDIL 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  +D + + + K  +    +         +   K      +   +   ++G + ++  
Sbjct: 218 LVNGEDKFLRNLDKDVYQPMIKTFGFSNSCDYF-CKNYDYREDSTDICAMIDGLEVNYTI 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
           P  G+  + N+L A G+   + +D     + L        R +       G  I  D Y 
Sbjct: 277 PSLGKHNILNSLAALGVASVLQMDLQKAAKSLIDFQPSKLRMQI--EKKDGITIINDSYN 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI---VTD 417
              +S++ +L  +    + R I + G   +  +        +G+ A    DI I   +  
Sbjct: 335 ANPDSVKSVLSILAEKNNVRRIAILGDMLELGRDSDKYHRQIGECAAHSCDILIGIGMFS 394

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNR--IEAIRTAIEMLNKQDVLVVAG 466
           D  R          + HG+        R   E++ T  +++   DV+++ G
Sbjct: 395 DYMRE-------GALEHGMDEGFCYSFRTQEESVTTIKDIMRVGDVVLLKG 438


>gi|310658896|ref|YP_003936617.1| UDP-n-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii
           DSM 519]
 gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii]
          Length = 516

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 103/489 (21%), Positives = 197/489 (40%), Gaps = 46/489 (9%)

Query: 10  DFPELINQLSIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           D   L+  + I         +  I  ++  S  ++ G +F  I G K DGH ++  A  +
Sbjct: 3   DVASLLKGIEILEENRPLSHDHNIQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAKNK 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA   VV         S     + P  +V + R  L+L A   Y    +   ++ +T T+
Sbjct: 63  GAVGAVVE--------SIQDNIDIPQYLVSDARHSLALCACNFYNHPSKFMKMIGITATN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ A  +  I + +   +  +G     +      + LTTP  + L   +  +   G+T
Sbjct: 115 GKTTTAFMIDNILENNNFKTGLVGTVLIKVGDEQIASDLTTPESLDLQNYIYRMKENGLT 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           HV++E SS  ++  R+ GI      F N+ R+HID H+T + Y   K  L      K S 
Sbjct: 175 HVTMEVSSSAIELDRIAGIDYDIVIFNNISREHIDLHETFENYVALKSSLITN-AKKGSW 233

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------- 296
           AI+  D   +  ++ +       VL+ G       +       +  +   +VE       
Sbjct: 234 AILNMDCEEAASLVNKTE---ANVLTYGVNNDNAMILCKNLDLSSGRGKFTVEISKLFSI 290

Query: 297 ------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                  + F+    +PG   VYNA+ A    +   +   ++ E       V  RFEF+ 
Sbjct: 291 NGYLYMNQSFEISLSVPGYHSVYNAMAAIAAALICKVPIDVIQESFLNFKGVERRFEFIY 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N    +I  D+   + ++++ ++ +  +   ++ +V+   G R         +  +  A
Sbjct: 351 END--FKIIDDHFANAGNIDVTMETLNFMKYNKLHLVYAIRGSRGPIVNNENAQAIVTWA 408

Query: 411 DIA------------IVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN 457
                            T+ +  +++ E + +EII+     +E   +  +AI  A+    
Sbjct: 409 KKLNLSEIIATKSADYTTEKDIVTDEEEAVFSEIINSSKLKLELYEHLSDAIGEALNRAK 468

Query: 458 KQDVLVVAG 466
           + DV+++AG
Sbjct: 469 EDDVILLAG 477


>gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis]
 gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 457

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 187/477 (39%), Gaps = 37/477 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   
Sbjct: 5   TVKNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEA 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++   +            N  +++VD+T   L   A     +    ++ VTG++GK
Sbjct: 64  GVAAVLWDRSVP------NPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +           G    +     +       P+ +   L+   +  +  + 
Sbjct: 118 TTTKDMIHAVL----------GTQYRVHKTGGNFNNHIGLPLTV---LAMPENTEIAVLE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S+ G            A   TN+G  H+    +++    AK+ +   L  KE   +I
Sbjct: 165 MGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDGVLI 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           Y  D     +++ A++   +    G    +  L+ V         TI  +G +  F  P+
Sbjct: 223 YIGDE---PLLQNAYSCQTKTYGTGTHNDYQ-LQDVSQSEEGTHFTI--KGIENTFFIPI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V NA+ A       GI      + L  L V   R E + T+S    I   Y  + 
Sbjct: 277 LGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASP 336

Query: 367 NSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPR 421
            S++  ++   ++   G+ ++V G     GD ++      G  I+ D  D          
Sbjct: 337 TSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGA 396

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVTN 477
                 ++      +  + EK + ++A++   E  +K D+++  A +G +   IV +
Sbjct: 397 FIAEGALKHFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIVKD 450


>gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
 gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
          Length = 457

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 187/477 (39%), Gaps = 37/477 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   
Sbjct: 5   TVKNIAEMVEGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEA 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++   +            N  +++VD+T   L   A     +    ++ VTG++GK
Sbjct: 64  GVAAVLWDRSVP------NPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +           G    +     +       P+ +   L+   +  +  + 
Sbjct: 118 TTTKDMIHAVL----------GTQYRVHKTGGNFNNHIGLPLTV---LAMPENTEIAVLE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S+ G            A   TN+G  H+    +++    AK+ +   L  KE   +I
Sbjct: 165 MGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDGVLI 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           Y  D     +++ A++   +    G    +  L+ V         TI  +G +  F  P+
Sbjct: 223 YIGDE---PLLQNAYSCQTKTYGTGTHNDYQ-LQDVSQSEEGTHFTI--KGIEKTFFIPI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V NA+ A       GI      + L  L V   R E + T+S    I   Y  + 
Sbjct: 277 LGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASP 336

Query: 367 NSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPR 421
            S++  ++   ++   G+ ++V G     GD ++      G  I+ D  D          
Sbjct: 337 TSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGA 396

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVTN 477
                 ++      +  + EK + ++A++   E  +K D+++  A +G +   IV +
Sbjct: 397 FIAEGALKHFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIVKD 450


>gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
 gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
          Length = 460

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 161/395 (40%), Gaps = 37/395 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  +  +SSDSR I    +FVA+ G++ DGH F   AI  GA A++V    +      
Sbjct: 19  GDDVTVQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLVERELAF----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P L+V + +K +    + +  +     +A+TG++GK+SV   +  I        
Sbjct: 74  ----DIPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIATILSAKHQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +            TP   Y    L      G  H      + GL       ++ 
Sbjct: 130 YTAGNFNNEIGVPLTLLRLTPEDKYGVFEL------GANHKGEIDYTSGL-------VRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+G  H++   +Q     AK  ++  L  ++  AII ADDA++  +  R     
Sbjct: 177 HVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHL-QEDGTAIINADDAFADVM--RVKAKH 233

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            + LS   Q G       V A  +K       +  ++  G+  + + PL G  QV NAL 
Sbjct: 234 YKQLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNALA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA +CIA+G++   + E L +L  V GR +         R+  D Y     S+   +  +
Sbjct: 294 AASVCIALGLNLTEIAEGLSQLTPVKGRMQPTQLGR--VRLIDDSYNANPVSVGAAIAWL 351

Query: 377 RTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
           + I+  R +V+   G   D        +G++A   
Sbjct: 352 KEISENRCLVLGDLGELGDNAPLLHAELGQLARQQ 386


>gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
 gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
          Length = 458

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGK 467
            T          K+ A+I  G     P    K   N+ E ++    +++ +DV++V A +
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASR 446

Query: 468 GHETVHIV 475
           G +   ++
Sbjct: 447 GMKLEEVI 454


>gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.]
          Length = 493

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 179/484 (36%), Gaps = 52/484 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           ++ LI     E+I       +  +++     VS DSR I  G +FVAI GN  DGH F  
Sbjct: 1   MKQLIPWTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALGELFVAIKGNNHDGHAFAE 60

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             + QG + IV++   + +     +++ +   + VDNT K L   A+    +   +++A+
Sbjct: 61  AVVEQGIKGIVINKQKAGELLCDKLKNQDVFCIEVDNTTKALGDLAAYNRTRADVSVVAI 120

Query: 121 TGTSGKSSVASFVQQI-------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK+S       I          +G  + +IG   T+                    
Sbjct: 121 TGSNGKTSTKEMANAIVSRKFDTLSTTGNLNNEIGLPLTL-------------------- 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L   SSQ    + +  +  G      +  K   G  TN+GR H++  +T +   NAK  L
Sbjct: 161 LKLCSSQKWAVLELGMNHPGEIARLAEICKPDIGIITNIGRGHLEGLKTIEGVMNAKGEL 220

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
            + + P +  AI+ ADD     VM  A      V+  G  +   I    V    N     
Sbjct: 221 LDGIKP-DGTAILNADDE---RVMCLARKTTRNVIYFGLSENALIKASSVEVNKNLTSFV 276

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + +           PG F V NAL AA +   + + +  +   LE    V GR   + T 
Sbjct: 277 LKLPDDSIRVELNAPGRFMVSNALAAASVGYLLNLSAQEIKSGLENFAPVKGRMN-ITTL 335

Query: 353 SRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIA 406
             G  I  D Y    +S+E  +K++  +            +   G   +   + I    A
Sbjct: 336 QNGVTIIDDSYNANPDSMEAAIKSLAGLKGKNRGALVAGDMLELGIYSETLHKKIGELCA 395

Query: 407 LDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVL 462
               +    T           I    +I     G  E    +  E        L  +D +
Sbjct: 396 ECGIERLYATGQFSSDIAAGAIIGGMDISSVFTGSQEDILSDMTE-------WLRPEDWI 448

Query: 463 VVAG 466
           ++ G
Sbjct: 449 LIKG 452


>gi|226507610|ref|NP_001141424.1| hypothetical protein LOC100273534 [Zea mays]
 gi|194704536|gb|ACF86352.1| unknown [Zea mays]
          Length = 540

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 118/516 (22%), Positives = 225/516 (43%), Gaps = 42/516 (8%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+     ++  +  V  D+  + AG +FV + G   DG   + +A  +G
Sbjct: 10  LAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADKRG 66

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A A+V     +++   A       +++VD+    L +  + LY +   N+  + VTGT G
Sbjct: 67  AVAVVADQDLNIEGTLA----CRALVIVDDILTALRVLPACLYSRPSMNMAIIGVTGTDG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            ++    V+ + +  G+ +  +G   T    S+        +  PI   K ++ +   G 
Sbjct: 123 VTTTTHLVKAMYEAMGVRTGLVGVLGTYAFSSNKLDARPDASSDPIAAQKLMATMLHNGT 182

Query: 183 THVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240
             V +E  + G+    +D  I       TN+     +   T + Y +    LF  ++ P+
Sbjct: 183 EAVVLEKGTDGMPPSGVDSEIDYDIAVLTNVRHTDEENGMTYEEYMSRMASLFSRMVDPE 242

Query: 241 ESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               ++  DD  +     +  H+      S   +   +H  K      + +V +      
Sbjct: 243 RHRKVVNIDDPSAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGI 302

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G   +Y+ L    + IA+G     ++  +E++  +PGR E +      G + 
Sbjct: 303 LEISSGLLGRDNIYSILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELIDEEQAFG-VI 361

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VD+A T  +L  +L  +R +   RI+ V GC G++++GKRP+M KIA D +D+ ++T DN
Sbjct: 362 VDHARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSDN 421

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------------------AIEMLN 457
           P +EDP  I  +++ G+   +E+  +  A                         A+ M  
Sbjct: 422 PANEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGE 481

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + DV+V+ GKG++T  I  +  +    D +  RE L
Sbjct: 482 QGDVVVITGKGNDTYQIEGDKNE-FFDDREECREAL 516


>gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 458

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWVKDV------ANPPENLPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGK 467
            T          K+ A+I  G     P    K   N+ E ++    +++ +DV++V A +
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASR 446

Query: 468 GHETVHIV 475
           G +   ++
Sbjct: 447 GMKLEEVI 454


>gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
 gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
          Length = 458

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/489 (19%), Positives = 180/489 (36%), Gaps = 59/489 (12%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +                N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAIATLWMKDVE------NPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  I        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++    +Y  D           N     ++ G  +    +   V          ++   +
Sbjct: 216 QKGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQSTGTHFKMN-RDE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I
Sbjct: 275 TSSFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         +++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLGGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV-AG 466
            T          K+ A+I  G      K +R++A       I+    ++  +DV++V A 
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPK-DRVKAYDSKEELIKELQAVVGTKDVVLVKAS 445

Query: 467 KGHETVHIV 475
           +G +   ++
Sbjct: 446 RGMKLEEVI 454


>gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Ames]
 gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Sterne]
 gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A1055]
 gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Vollum]
 gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Australia 94]
 gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus anthracis CI]
 gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Ames]
 gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWVKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGK 467
            T          K+ A+I  G     P    K   N+ E ++    +++ +DV++V A +
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASR 446

Query: 468 GHETVHIV 475
           G +   ++
Sbjct: 447 GMKLEEVI 454


>gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
 gi|158447563|gb|EDP24558.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
          Length = 516

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 112/494 (22%), Positives = 206/494 (41%), Gaps = 47/494 (9%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ L+   +  E+   L I      E++I ++  +S+++    IFVAI G K DGH++
Sbjct: 6   MKLKTLLEDLEILEIKGNLDI------EKEIQKIEYNSKNVSENDIFVAIRGYKTDGHIY 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  A  QG  A +V     L         +   + V N+R  LS  +   YGK  E++  
Sbjct: 60  IKSAKKQGCYACIVEDFVDL---------DVAQIKVKNSRAALSKVSHNYYGKPSEDLDI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +T T+GK++ +  +++I + +G     IG     I  F   + LTTP  + L K LS 
Sbjct: 111 IGITATNGKTTTSFMLKKIYEEAGSKVGIIGTVYVKIDDFMIPSYLTTPESLDLQKYLSI 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +    V +E SS  L+  R   +     SF+NL ++H++ H + +AY   K +L  E
Sbjct: 171 FRERKADKVIMEVSSAALELDRAKDVDYNIVSFSNLSKEHMEQHGSYEAYKREKSKLITE 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   A++  D+   KE+  +   A     S+    +   +K +     + +    + 
Sbjct: 231 -AKEHQIAVLNFDNPEIKELASK-TKAKVFSFSLDDSLENFSMKNLDLSTGRGKFDFIIN 288

Query: 297 G-----------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        +F       G   V N++VA  + +  GID   +   L     V  R
Sbjct: 289 RDIETKSGILKKGEFHVELNTAGFSSVMNSMVAISISLLDGIDIVTIQRALRIFRGVERR 348

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           FE +    +  +I  D+     ++++ L+ +  +    I  ++   G+R           
Sbjct: 349 FEIIFE--KDFKIIDDHFANEVNIDVTLETLCKMKYNDIKFLYAIRGNRGVELNEENALK 406

Query: 406 ALDLADIA------------IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTA 452
            ++  +               VT  +  S++   I  +I+      +   +   EA+ T 
Sbjct: 407 IIEWNNKLKLSEIYATLSRDTVTWKDEVSDEERDIFLKIMKENNIKVHLFDTLKEAVETV 466

Query: 453 IEMLNKQDVLVVAG 466
           I++  K DV++ AG
Sbjct: 467 IDIAQKDDVVMFAG 480


>gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. 18P13]
          Length = 454

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 169/474 (35%), Gaps = 55/474 (11%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+   +        +  + E+S+D+R I  G +F+A+ G + DGH F  QA  QGA A
Sbjct: 6   LTEIAQAVGGTLSNCPDCAVTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGAVA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++             +  + P +VVD+T K L  FA+    K     + VTG+ GK++  
Sbjct: 66  VISDH----------VIPDCPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTTK 115

Query: 131 SFVQQI-------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           + +  +        + +G  + +IG   T+       +                      
Sbjct: 116 NMIALVLSTHCKTLKTAGNLNNEIGLPKTLMGLDSTYK--------------------AA 155

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  S  G             G  TN+G  HI   ++Q+    AK+ + +  +  ++P
Sbjct: 156 VVEMGMSDFGEISRLSKAAAPSIGVITNIGFSHIAQLKSQEGICRAKLEILDG-MAADAP 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++  DD Y   + K   +       +   G     +++ + +      +  +G      
Sbjct: 215 LVVNGDDPYLIPL-KTTLSRPVYTYGIKNAGADCRAERIVSENGCTSFDLCWQGTVTPVT 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  GE  V N   A  + +  G++   +   L        R      + +   I   Y 
Sbjct: 274 LPCIGEHNVMNGAAAFCIGMLAGMEPEEIAGALRTYQPDGMRQNIQQIDDK-TVILDCYN 332

Query: 364 HTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIM----GKIALDLADIAIVTDD 418
            + +S+   L  +  +  +GR I V G   +  +  R +     G +     D+      
Sbjct: 333 ASPDSMRASLSVLGQLSVTGRRIGVLGDMLELGEQSRQLHRMVGGLVTPAQVDLLFCYGP 392

Query: 419 NPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAI-RTAIEMLNKQDVLVV-AGKGH 469
             R      I  E    G+P  ++     EA+       L   D ++  A +G 
Sbjct: 393 ESRY-----IAEEAAKQGVP--VQHFTEKEALTEQLRRSLQPGDAVLFKASRGM 439


>gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
 gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
          Length = 458

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/489 (19%), Positives = 180/489 (36%), Gaps = 59/489 (12%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +                N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAIATLWMKDVE------NPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  I        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++    +Y  D           N     ++ G  +    +   V          ++   +
Sbjct: 216 QKGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I
Sbjct: 275 TLSFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         +++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV-AG 466
            T          K+ A+I  G      K +R++A       I+    ++  +DV++V A 
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPK-DRVKAYDSKEELIKELQAVVGTKDVVLVKAS 445

Query: 467 KGHETVHIV 475
           +G +   ++
Sbjct: 446 RGMKLEEVI 454


>gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
 gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
          Length = 458

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWVKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGK 467
            T          K+ A+I  G     P    K   N+ E ++    +++ +DV++V A +
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASR 446

Query: 468 GHETVHIV 475
           G +   ++
Sbjct: 447 GMKLEEVI 454


>gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens 200]
          Length = 460

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/406 (24%), Positives = 162/406 (39%), Gaps = 35/406 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E+++Q         +  I ++SSDSR +    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EVLSQHLGAHRVGNDVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +L         N P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAL---------NIPQLIVADCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G  +            TP+  Y    L      G  H      + 
Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFEL------GANHKGEIDYTS 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL       ++       N+G  H++   +Q     AK  +F  L   +  AII ADDA+
Sbjct: 172 GL-------VRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHL-QADGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPL 306
           +  +  +A        S   +G       V A  +K       +  +   G+  D   PL
Sbjct: 224 ADVMSVKARPYKQLHFSQ-QEGAAKRRIDVIATGHKADADGCYRFMLKYLGESCDVKLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G  QV NAL AA +CIA+G+    +   L +L  V GR +         R+  D Y   
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQLGR--IRLIDDSYNAN 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
             S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 341 PVSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 458

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/489 (19%), Positives = 181/489 (37%), Gaps = 59/489 (12%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +                N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAIATLWMKDVE------NPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  I        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++    +Y  D           N     ++ G  +    +   V          ++   +
Sbjct: 216 QKGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I
Sbjct: 275 TLSFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         +++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV-AG 466
            T          ++ A+I  G      K +R++A       I+    +++ +DV++V A 
Sbjct: 395 FT--------YGRLGAQIAEGAKINFPK-DRVKAYDSKEELIKELQAVVDAKDVVLVKAS 445

Query: 467 KGHETVHIV 475
           +G +   ++
Sbjct: 446 RGMKLEEVI 454


>gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
 gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
          Length = 454

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 170/451 (37%), Gaps = 34/451 (7%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +     +E  +  VS+DSR I    +F+A+ G + D H F  Q +  GA A++V     +
Sbjct: 17  VINEGNQELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQVVDAGAAALLVDHQLDI 76

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                    N P ++VD+TR  +   A+ +  +   +++ +TG+SGK+SV      I  +
Sbjct: 77  ---------NCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTGSSGKTSVKEMTASILVQ 127

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G + +  G          +       P+ L +            + + A+     ++  
Sbjct: 128 RGKTLYTAG----------NLNNDIGVPLTLFRL---THDHQFAVIEMGANHPHEIEYTT 174

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + +K  A    NL   H++   + +    AK  +++ L P E  AI+  D +YS +   +
Sbjct: 175 NIVKPEAVLVNNLFGAHLEGFGSPEGVAKAKGEIYQGL-PDEGTAIVNLD-SYSDKWQFK 232

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 R      +    +   +         T+       D   PLPG   + N L A+
Sbjct: 233 PRQTVWRYSLTQQEHADFYPSNIQVKQLTTDFTLHTPVGQVDITLPLPGMHNIANVLAAS 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L I++G     + + L     VPGR   V        I   Y     S+   +  + T+
Sbjct: 293 ALSISVGATLEEISQGLASTKAVPGRLYPVRLGDNKVVIDDTYNANDGSMIAAINVLATL 352

Query: 380 TSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
              RI+VV   G            +G IA   A +  V      SE    I ++      
Sbjct: 353 PGYRILVVGDMGELGHYAHDCHQRVG-IAAKQAGLDKVLSVGQLSE----IISQSSECGE 407

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            F  K +    +   I +  + DV+ +  KG
Sbjct: 408 HFTVKQDL---LTRLIPLTQQNDVVSILVKG 435


>gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 458

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 183/488 (37%), Gaps = 57/488 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G +++ I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWVKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGK 467
            T          K+ A+I  G     P    K   N+ E ++    +++ +DV++V A +
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASR 446

Query: 468 GHETVHIV 475
           G +   ++
Sbjct: 447 GMKLEEVI 454


>gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
 gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
          Length = 454

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 182/477 (38%), Gaps = 61/477 (12%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           ++    + E +I+ V++D+R +  G +F+ ++G   +GH F  +A+  GA A++ +    
Sbjct: 16  TLSNQAFGEEQIHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQK-- 73

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                       P+++VD+T   L   A     +    ++ +TG++GK++    +  + Q
Sbjct: 74  ----ETNPPEGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQ 129

Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +       G  +  IG   TI S  +                       +  + +  S+
Sbjct: 130 TTYQVHKTDGNFNNHIGLPLTILSMPKGTE--------------------IAVLEMGMSA 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +   +  +  A   TN+G  H+    +++A  +AK  + + L  ++       D+ 
Sbjct: 170 KGEIEFLSNLAEPDAAVITNIGESHMQDLGSREAIADAKCEITKGL-KEDGTFYYLGDEP 228

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             +E   RA     +V + G +     +K        +     VEG    FL P+ G+  
Sbjct: 229 LIRE---RATQLSQQVKTFG-EADDCDIKVTHINQLAEGTEFQVEGYAQGFLIPVLGKHN 284

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V NAL A  +    G++   + + L +  +   R E   T  +G  +  D Y  +  S++
Sbjct: 285 VKNALAAIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKTE-KGITVINDAYNASPTSMK 343

Query: 371 MILKNIRTITS--GRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +  +  +     RI+V   +   G + +     +   I  +  D  +           
Sbjct: 344 AAIDLVGDMDGFANRILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVM---------TY 394

Query: 426 EKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
            ++ A I  G              ++ E  +   ++    DV++V A +G     ++
Sbjct: 395 GRLGAFIAEGAKKSFGDTRVFSFMDKEELKKKLADVAGPDDVVLVKASRGMRLEEVI 451


>gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 477

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 90/468 (19%), Positives = 159/468 (33%), Gaps = 44/468 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++I  ++  P       I  +S DSR I  G  F AI G++ DGH +   A+A GA  ++
Sbjct: 9   DMIAVMAGRPFGTLPEGITGISIDSRSITPGEAFFAIKGDRVDGHDYASMAMANGASLLI 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VV++    L         +    I+AVTG+ GK++    
Sbjct: 69  VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASS 191
           ++ +   SG     +               +  +   +   L+ +          V  + 
Sbjct: 125 LRHVLSPSGKVHASV--------------ASFNNHWGVPLTLARMPEDTDYGVFEVGMNH 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +  +  I+      T +   H+   +  +    AK  +FE L P     ++  D+ 
Sbjct: 171 PGEIRPLVAMIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEP-GGHVVLNRDND 229

Query: 252 YSKEVMKRAHNAGC-RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               + + A + G   + S G   K    L +         + +++ G+  +     PG 
Sbjct: 230 QFNFLDRTAQSLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVDYAHTS 366
               NAL A G+   +G D    +E L  L        R   V        I   Y    
Sbjct: 290 HIAENALAALGVVRIVGADMQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANP 349

Query: 367 NSLEMI---LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVTDDN 419
            S+      L        GR I V G   +  +  + +   +A        +   +    
Sbjct: 350 ASMRAAIALLAASEPTGRGRRIAVLGDMLEMGEYAQKVHTDLAVPLLAAGIEHVWL---- 405

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
                     A +   +P  +    R    E     +  +   DVL+V
Sbjct: 406 -----AGAEMAALKESLPESVHVEYRENTSELTDYVLNSVAPGDVLMV 448


>gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
 gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
          Length = 480

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 101/466 (21%), Positives = 177/466 (37%), Gaps = 41/466 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             +++ DSR ++ G+ FVAI G K DGH FI +AI +GA  I               RS 
Sbjct: 12  FTDITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVIFTEKEIKS-------RSG 64

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+ V ++R  L   A+  Y        ++ VTGT+GK++    +  +    G +S  I
Sbjct: 65  IPIVRVKDSRSILGKLAAEFYNYPSRKLKLIGVTGTNGKTTTTHLIYHLLNYKGKNSGLI 124

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G              LTTP P+ L K L  +    + +  +E SSHG+   R+ G +   
Sbjct: 125 GTVKVDTGKRTIPGNLTTPEPVTLQKYLDEMVKHNLNYACMEVSSHGIKLKRITGSQFAI 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH D H     Y   K    E+  P  +  ++  DD Y       A N    
Sbjct: 185 KVGTNITVDHFDLHSDFSDYVQVKKSFLEDKNPH-TLVLLNNDDHYLSSFGNIAKNQIGY 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG------------KDFDFLFPLPGEFQVYN 314
            ++       I  + +           S+                      +PGE  +YN
Sbjct: 244 GIT---TNTDITAENINYSGITTDFVYSLNKSIKTSQGNKIGPMKVPINLKIPGEHNIYN 300

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           ALVA  + +  G+    + +   +   +  RF+ +   ++   I  D AH   S   + K
Sbjct: 301 ALVAITIGLYYGLTPEKIQDFFGQFRGIWRRFQVI--YNKDFAIIDDCAHNPGSYGAVFK 358

Query: 375 NIRTITSGRIIVVFGCGGDRD----QGKRPIMGKIALDLADIAIVTD---------DNPR 421
            +  +    +++V    G+R     +G    +GK      +  ++T          D   
Sbjct: 359 TVSQLKYKNLLIVNAIRGNRGAQINKGNAETIGKWLKKFHNYYLLTTNCNDVVKPIDKVS 418

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            E+ +     +      +        A++  ++ +   D++++ G 
Sbjct: 419 PEEEKVFLQALDKNNIKYSHLDQLKPALKNVLDKVTPDDIILLLGA 464


>gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 452

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 174/463 (37%), Gaps = 40/463 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +++   +         K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA  
Sbjct: 6   LSQVVEATAGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGATG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    +++            + V+NT       A     +    ++A+TG+SGK++  
Sbjct: 66  AIVEKGRAVE--------GIICIEVENTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  +           G    +    ++       P  L   L   +      V +   
Sbjct: 118 EMVAAVL----------GTEFNVLKTEKNFNNEIGLPKTL---LRLTAEHEACVVEMGMR 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  +      +   G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD
Sbjct: 165 GLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y K +   A     + ++ G +         +    +  + T     + FD   P+ GE
Sbjct: 224 PYVKAMDSLAKG---KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGE 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             VY+AL A      +GI S  + + L +    P R E V        I  D Y    +S
Sbjct: 281 HNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFED--IVILNDAYNANPSS 338

Query: 369 LEMILKNIRTITSGRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   +K +  +   R I     +   G   +   R I   +A +   +     D      
Sbjct: 339 MAEAIKALGQLEGKRKIAMLGDMLELGDFSEDAHREIGQLLAEEGYSVVFTFGDAAAF-- 396

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  E    G+  F    +   A   + ++  K DV++V G
Sbjct: 397 ---IAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILVKG 435


>gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
 gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
          Length = 452

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 102/463 (22%), Positives = 173/463 (37%), Gaps = 40/463 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +++             K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA  
Sbjct: 6   LSQVVEATQGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKGATG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    ++             + VDNT       A     +    ++A+TG+SGK++  
Sbjct: 66  AIVEKGRAV--------DGIVCIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  +           G    +    ++       P  L   L   +      V +   
Sbjct: 118 EMVAAVL----------GTEFNVLKTEKNFNNEIGLPKTL---LRLTADHQACVVEMGMR 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  +      +   G  TN+G  HI+   +++A   AK  L    LP+ S AI+  DD
Sbjct: 165 GLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAQAKGELI-RCLPENSVAILNEDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y K +   A     + ++ G +         +    +  + T     + FD   P+ GE
Sbjct: 224 PYVKAMDSLAKG---KTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGE 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             VY+AL A      +GI S  + + L +    P R E V        I  D Y    +S
Sbjct: 281 HNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFED--IVILNDAYNANPSS 338

Query: 369 LEMILKNIRTITSGRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   +K +  +   R I     +   G   +Q  R I   +A +   +     D      
Sbjct: 339 MAEAIKALGQLEGKRKIAMLGDMLELGDYTEQAHREIGQLLAEEGYSVVFTFGDAAAF-- 396

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  E    G+  F    +   A   + ++  K DV++V G
Sbjct: 397 ---IAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILVKG 435


>gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
 gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
          Length = 458

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 95/484 (19%), Positives = 179/484 (36%), Gaps = 49/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVES 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKGV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + + L  L +   R E V TNS    I
Sbjct: 275 NISFYIPVLGKHNVYNTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHET 471
            T          +I        P    K   N+ E ++    +++ +DV+++ A +G + 
Sbjct: 395 FT----YGRLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKL 450

Query: 472 VHIV 475
             I+
Sbjct: 451 EEII 454


>gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 468

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 185/486 (38%), Gaps = 73/486 (15%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +I  +S+D+R I  G +FVA+ G + DGH FI +A  +GA   +VS     ++    
Sbjct: 22  PDVEIFGISTDTRTIHKGDLFVALEGERFDGHYFIDEAFKKGAIGAIVSREVESKNI--- 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------Q 138
                 I+ V +T K L   A     +    ++AVTG++GK++    +  I        +
Sbjct: 79  ------IIKVRDTLKTLGDIAKIYREEFDIPVIAVTGSNGKTTTKEMLGYILTREFKTVK 132

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G  +  +G   T+                    L       +  + +E +  G  +  
Sbjct: 133 AKGSYNNFVGVPLTL--------------------LEMDRHTQLAVLEMETNLLGGIKRL 172

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +  K   G  TN+G  H+ + +T++  +  K  L E L P++  A++ ADD Y  ++ +
Sbjct: 173 CEIAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESL-PEDGVAVLNADDPYVLKMKE 231

Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            +     R+++ G + K       +       + T++    ++           VYN L 
Sbjct: 232 ISRTK--RIVTFGVENKSEFSASNIRVGDTFLEFTLN---NNYRVKLNTISYCNVYNGLA 286

Query: 318 AAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVD-YAHTSN 367
           A  +   + G+    V++ L+       R E +          N    RI  D Y     
Sbjct: 287 AIAVSHVVFGLSLEKVIDILKDFKFPSLRMELIEIPLIDRATSNEESVRIINDCYNANPQ 346

Query: 368 SLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           S++  L  +  + S    I + G     G++       +GKI  D     ++T       
Sbjct: 347 SMQEALVAVGKMNSYTNKIAILGEMLELGEKAPEFHYQIGKICADCGFDMLIT------- 399

Query: 424 DPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
               +   + HG               N +EA    + +L   D++++ G +G +   IV
Sbjct: 400 -VGDLAQYMAHGAEDEGMPRENIFVSVNNVEASDRLLRILRPGDIVLIKGSRGMKMEEIV 458

Query: 476 TNGEKK 481
               K+
Sbjct: 459 ERLRKR 464


>gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
 gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
          Length = 454

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/486 (19%), Positives = 173/486 (35%), Gaps = 44/486 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ L+  +  + +     +P    + ++ ++S+D+R I  G +F+A+ G   DGH F  Q
Sbjct: 1   MEKLMLSEIIQAVRGSYGYPA---DVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAQ 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A+V                    L+VD+T + L   AS    +    ++ +TG
Sbjct: 58  AMEAGAVAVVTERPVD----------GARCLIVDSTSQALLDAASYYRSRFDIPLVGITG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +  +  +        G  +  +    +N +  P        L   S+   
Sbjct: 108 SVGKTTTKEMIWSVMSK--------GFKTLKTEANHNNEVGMPKT-----LLELDSTHQA 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +  G         K      TN+G  HI+   +Q+    AKM + +     ++
Sbjct: 155 AVIEMGMNHKGEISRMSTSCKPTVCVITNIGVSHIENLGSQEGILKAKMEILDG-ASADA 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           P I+  DD    +V +   +      SV  +   ++   + A       TI    +    
Sbjct: 214 PLILSRDDRILSKV-QVYGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPA 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                GE  V NAL A  +  A+G+D+A ++  L        R   +  N     I   Y
Sbjct: 273 RINCLGEHNVKNALAAFCVGAALGMDNADIIAGLADFRPEGMRQNIIEENGV-TYILDCY 331

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
               +S++  L  +  +   GR I V       G    +  R +   +     DI +   
Sbjct: 332 NAAPDSMKASLSVLGQVSVRGRRIAVLGDMLELGKGSTRYHRTVGEYVKNSKTDILLCFG 391

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGH---ET 471
            N        I      G          +R E       +L + D ++  G +G    E 
Sbjct: 392 KNSNY----YIEGACDKGFDRANTAHFDSREELAEHLKGILKEGDAVLFKGSRGMKLEEV 447

Query: 472 VHIVTN 477
              +  
Sbjct: 448 YEAIKQ 453


>gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           tropica CNB-440]
 gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinispora tropica CNB-440]
          Length = 471

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 94/451 (20%), Positives = 162/451 (35%), Gaps = 44/451 (9%)

Query: 28  RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             +   V  DSR +  G +FVA  G + DGH +   AI  GA A++ +           +
Sbjct: 24  VAVTGSVEFDSRKVGPGGLFVAFPGERVDGHDYAEGAIRAGAVAVLGTR----------V 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            +  P+++VD+ +  L   A  +  + P+  ++ +TG+SGK+S    +  +  R G +  
Sbjct: 74  VAGVPMVLVDDAQVALGRLARAVVDRLPDLTVVGLTGSSGKTSTKDVIAALTARLGPTVA 133

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +             P   YL              +   A   G   +  + +   
Sbjct: 134 PPGSFNNELGHPYTALQADPETRYL-------------VLEKGARGVGHVSYLCEVVPPQ 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  HI    +++    AK  L   L P E  A++ ADD     V   A     
Sbjct: 181 ISVVLNVGVAHIGEFGSRETIALAKGELVAAL-PAEGLAVLNADDDL---VAAMATRTRA 236

Query: 266 RVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           RV+  G   +     +  V     +   T+            L G  QV N+L AA +  
Sbjct: 237 RVVRYGEAAEADVRAVDVVLDERGRPSFTLVTPEGRAPVRLGLTGRHQVSNSLAAAAVAR 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
            +G+    +   L +L +V  R   V     G  +  D Y     S+   L+ +      
Sbjct: 297 ELGMPVTELATALGELGLVSSRRMDVFERVDGVTVIDDSYNANPASMAAALRALAGFRRR 356

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRA---EIIHG 435
           R I V G   +    +Q     +G++A +   D  +V       E    I      +   
Sbjct: 357 RTIAVLGYMAELGPYEQDGHVEVGRLAAELGVDRLLV-----VGEAAAPIHEGATSVRDW 411

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               ++  ++  A+      L   DV++V G
Sbjct: 412 EGESVQLTDQAGAVEVLRGDLRPGDVVLVKG 442


>gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 482

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 166/466 (35%), Gaps = 46/466 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +    DSR ++AG IF A+VG + DGH +I  A  +GA  ++             +    
Sbjct: 24  SGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGK 83

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V++    +   A     +    ++A+TG++GK++    V  +              
Sbjct: 84  ALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLSEK---------- 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  ++              L    +  V  + +     G      D      G  T
Sbjct: 134 ---YRTHKNLENQNNELGLPMTILKATENTEVLILEMGMRGLGQIAFLCDIACPDIGVIT 190

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H++   +Q+A   AK  L E L P+   A++  +D +S   +K+A +   R    
Sbjct: 191 NIGTTHMELLGSQEAIARAKWELIEAL-PETGSAVLNGEDEWS---VKQAEHDSHRTFFY 246

Query: 271 GYQGKFIHLK--------------KVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQ 311
           G +G+F                     A       ++   G+           PLPGE  
Sbjct: 247 GLEGRFHEPDLRGRSLTPFGTLGTCFQAEMGHGDRSLVPLGEKQAASSVTVRLPLPGEHN 306

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V +AL A  + + + +        L  + +   R E          I   Y     S++ 
Sbjct: 307 VLDALAALSVGVLLNVSLEEGCRGLAAMELSRMRLELQPGPGGSTLISDVYNANPTSMKA 366

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEKIR 429
            L+ ++       + + G   +  Q  R    ++   +AD+ I  +    P +E+    R
Sbjct: 367 SLQVLKERGGESTLAILGEMYELGQSCRAGHYEVGQTVADLGISELITVGPLAEEIA--R 424

Query: 430 AEIIHGIP--GFIEKGNRIEAIRTAIEM---LNKQDVLVV-AGKGH 469
             +  G+          R  AI+ A E+   LN+   +++ A +G 
Sbjct: 425 GALEKGLSPQRIHSFPEREGAIKKARELLAGLNQGTWVLIKASRGM 470


>gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
          Length = 455

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 89/385 (23%), Positives = 156/385 (40%), Gaps = 28/385 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +I  V SDSR I    +FVA+ G + DGH F   A+  GA A++V+    L     
Sbjct: 19  GPDTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLAVENGANALLVTHELPL----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P L+V +T+K +    + L        +A+TG++GK+SV   V  I  +     
Sbjct: 74  ----DLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKTSVKEMVATILSQRHKVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G          +       P+ L + L      GV    + A+  G   +    +K 
Sbjct: 130 YTAG----------NFNNEIGVPLTLLR-LEEGDEFGVFE--LGANHRGEIDYTSSLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +F  L P +  A+I ADD++++ + + A    
Sbjct: 177 DVALVNNVASAHLEGFGSLAGVAAAKSEIFNHLSP-DGTAVINADDSFARVMKEAASEHK 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               ++              +  +    +S   ++     PL G  QV NAL AAG+C+ 
Sbjct: 236 QLTFAIEAAADLQGSGLEPDLLGRYCFKMSYLNQEVSVTLPLSGRHQVSNALAAAGICLT 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           +G+  + ++  L  L  V GR   + T     R+  D Y     S+   +  ++ I   R
Sbjct: 296 LGLPLSEIVSGLSLLEPVKGRM--LPTQLGRVRVIDDSYNANPASVSAAIDWLQEIDGYR 353

Query: 384 IIVVFGCGGDRDQGK--RPIMGKIA 406
            +V+   G   D        +G++A
Sbjct: 354 CLVLGDLGELGDNASLLHTELGELA 378


>gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           sp. W3-18-1]
 gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens CN-32]
 gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. W3-18-1]
 gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella putrefaciens CN-32]
          Length = 460

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 98/406 (24%), Positives = 163/406 (40%), Gaps = 35/406 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E+++Q         +  I ++SSDSR +    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EVLSQHLGAHRVGNDVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +L         N P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAL---------NIPQLIVTDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G  +            TP+  Y    L      G  H      + 
Sbjct: 118 IATILSAKYQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFEL------GANHKGEIDYTS 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL       ++       N+G  H++   +Q     AK  +F  L   +  AII ADDA+
Sbjct: 172 GL-------VRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHL-QADGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPL 306
           +  +  +A        S   +G       V A  +K       +  ++  G+  D   PL
Sbjct: 224 ADVMSVKARPYKQLHFSQ-QEGAAKRRIDVIATGHKADADGCYRFMLNYLGESCDVKLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G  QV NAL AA +CIA+G+    +   L +L  V GR +         R+  D Y   
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQLGR--IRLIDDSYNAN 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
             S+   +  ++ I+  R +V+   G   D        +G++A   
Sbjct: 341 PVSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQ 386


>gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli GR56]
          Length = 256

 Score =  232 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 121/247 (48%), Positives = 159/247 (64%), Gaps = 13/247 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSRH+  G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S           + ++ P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 78  VDAAGRGAAVAIASQP---------VDASIPVLAVKEPRRFLSIAAARFYGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +    TTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDRLLP 248

Query: 240 KESPAII 246
           K +PA+I
Sbjct: 249 KGAPAVI 255


>gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 458

 Score =  232 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 95/489 (19%), Positives = 180/489 (36%), Gaps = 59/489 (12%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMVNGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         +++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-------QDVLVV-AG 466
            T          K+ A+I  G         R++A     E+  +       +DV+++ A 
Sbjct: 395 FT--------YGKLGAQIAEGAK-INFPTERVKAYDNKEELAKELQAVVDVKDVVLIKAS 445

Query: 467 KGHETVHIV 475
           +G +   ++
Sbjct: 446 RGMKLEEVI 454


>gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
 gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
          Length = 458

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 181/484 (37%), Gaps = 49/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + + L  L +   R E V  +S    I
Sbjct: 275 NISFYIPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTVI 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +    + IVV G     GD++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHET 471
            T          +I        PG   K   N+ E ++    ++   DV++V A +G + 
Sbjct: 395 FT----YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKL 450

Query: 472 VHIV 475
             ++
Sbjct: 451 EEVI 454


>gi|325568267|ref|ZP_08144634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158036|gb|EGC70189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 506

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 193/502 (38%), Gaps = 29/502 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+ + K+     + +   P +  +     +S DSR   A  +F    G       ++  
Sbjct: 16  LQENLLKEIITPTDWVYTVPQEMTDIAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAA 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG +  +  + Y               ++V + R+ +++ A   YG   E +  + +
Sbjct: 74  AIDQGIQCYISETPYDNFATYG--------IIVTDIRETMAVIAQAFYGNPQEQLVTIGI 125

Query: 121 TGTSGKSSVASFVQQICQRS-GLSSFQIG--PTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK+S A F + I   S G           S       +  LTTP  + L K ++  
Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
            + G+TH+ +E SS      R+ GI    G+F N+  DHI    H T   Y   K  L  
Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVEHPTYDDYLYCKRELIR 245

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTIS 294
                    I+     +   + +         ++ G       +++ +            
Sbjct: 246 N----SKQMILNRQSDHYHLLRETCEVHQVPYITYGRSDADYVVQEGMDLKSFALTAASD 301

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V     ++   + G F   NA  A       G       + L  + +       V     
Sbjct: 302 VLQVSGEYQLGILGSFNHENAAAAILAACLAGASREDAQKVLPTVIIPG--RMIVLEKEN 359

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  + VDYAH   S + + +  R +   GR++ V G  G + Q +R  MG+   + AD  
Sbjct: 360 GAVMIVDYAHNYLSFQSLSELARQLRPDGRLLFVTGSAGGKAQSRRADMGRALGEYADKV 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +T D+P  E+   I  EI   I       I + +R +A++ AI   + +D++++AGKG 
Sbjct: 420 YLTSDDPDFEEAAAIAKEIADAITNPEVAIIHEMDRAQAVKLAIAEADGRDIVIIAGKGA 479

Query: 470 ETVHIVTNGEKKMSVDCDIIRE 491
           E    V   +     D  + ++
Sbjct: 480 EQYLKVAGKKVPYIGDLTLAQQ 501


>gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter
           uraniireducens Rf4]
 gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter uraniireducens Rf4]
          Length = 468

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 97/462 (20%), Positives = 170/462 (36%), Gaps = 30/462 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+I       +      ++ VS+DSR + AG +FVA+ G + DGH ++  A+A+G  A
Sbjct: 4   IDEIIEATGGTRIGSGNDAVSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVARGVRA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V++            ++   + V +T + L   A+    +    ++ +TG++GK++  
Sbjct: 64  FLVAADRLAGKQP---PNDVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTTK 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I  ++G      G  + +                    L          + +  S
Sbjct: 121 EMLATILAQTGPGLKTSGNLNNLIG-------------LPLMLLRLTKRDRWAVLEMGMS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G      +      G  TN    H++   + +A   AK  LF  L   +  A+  ADD
Sbjct: 168 EPGEIDRLAEMANPRIGVITNAFTAHLESMGSVEAVAKAKGELFMRL-KTDGWAVYNADD 226

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGE 309
                + +    AG + LS G +G  +  + + ++     + T+ + G D        G 
Sbjct: 227 PL---ISRCPAPAGVKRLSFGLRGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYGL 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             VYNAL AA     +G+D  L+   LE+      RF       RG  +  D Y     S
Sbjct: 284 HNVYNALAAAAAAHLLGVDPELIRSGLEEFTPYDKRFSL--EEIRGVVLVDDSYNANPAS 341

Query: 369 LEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +   L  +R I      I + G   +   G      ++ L  A    V       E  E 
Sbjct: 342 MAAALVTLRDIREESRAIAILGDMLELGTGSVAAHREVGLLAA--TCVERLYAMGEMAET 399

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + A  + G       +      E I      + K D ++V G
Sbjct: 400 VAAGAVDGGLSPENIVVARTHEEIIADLRRRVAKGDNILVKG 441


>gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42]
 gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42]
          Length = 456

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 174/477 (36%), Gaps = 59/477 (12%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           ++   ++ +  I   ++D+R ++   +F+ + G   +GH F+PQA  +G  A++   +  
Sbjct: 16  TLTNPEFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAVLWDRS-- 73

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137
                        +++VD+T + L   A     +    ++ VTG++GK++    +  +  
Sbjct: 74  ----EPNPPEGRAVILVDDTLEALQTLAKAYLKELGTRVIGVTGSNGKTTTKDMLHAVLG 129

Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                 + +G  +  IG   T+                    L+      +  + +  S+
Sbjct: 130 TQYRVHKTAGNFNNHIGLPLTV--------------------LAMPEDTEIAVLEMGMSA 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G         +  A   TN+G  H+    +++    AK+ +   L  ++     + D+ 
Sbjct: 170 RGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKLEIINGL-REDGVLFYFGDEP 228

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++         CR  + G  G    L+       ++    +++G D  F  P+ G   
Sbjct: 229 LLRQ-----KTYTCRTTTYG-AGADNDLRLKEIKQAEEGTYFNIDGIDRSFFIPVLGRHN 282

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A    I  GI        L +L V   R E V T +    +   Y  +  S++ 
Sbjct: 283 VMNAMAAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKA 342

Query: 372 ILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++ I T+   R  ++         D ++      G          + T           
Sbjct: 343 AVELIETMKGYRKKMLVLGDMLELGDEEKAFHEECGAAVNPAEIDHVFT--------YGT 394

Query: 428 IRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVTN 477
           + A I  G     E+G      ++ E +    EM    D+L+  A +G +   IV +
Sbjct: 395 LGAFIADGARRHFEEGRVSHYLDKKELLHAIQEMAASGDLLLFKASRGMKLEEIVKD 451


>gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
 gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
          Length = 455

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/490 (19%), Positives = 183/490 (37%), Gaps = 62/490 (12%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   E++   ++    +    I  V++D+R ++   +F+ + G   +GH F+ QA   
Sbjct: 5   TAKKIAEMVKG-TLTDPTYENIVIQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++ + +            +  +++VD+T   L   +     +    ++ VTG++GK
Sbjct: 64  GVSAVLWNKS------EPNPPQDQAVILVDDTLGALQELSKAYLQELGTRVIGVTGSNGK 117

Query: 127 SSVASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++    +  + Q         G  +  IG   T+ S  +D                    
Sbjct: 118 TTTKDMLHAVLQTQFRVHKTEGNFNNHIGLPLTVLSMPEDTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  S  G            A   TN+G  H+    +++    AK+ +    L 
Sbjct: 160 --VAVLEMGMSGKGEIDLLTRLANPEAAVITNIGESHMQDLGSREGIAEAKLEI-TNGLK 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGK 298
           K+   I   D+    +      +  CR  + G  +G    L+ V    +      S++G 
Sbjct: 217 KDGILIYIGDEPLLNK-----RSYSCRTKTFGADEGNDYQLEDVKQTEDGTHF--SIKGI 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  F  P+ G+  V NA+ A    I  GI      + L  L V   R E + + S    I
Sbjct: 270 DKTFFIPVLGKHNVLNAIAAFAAGIHFGITVENAAKGLSGLKVTGMRLELLKSESGVSII 329

Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
              Y  +  S++  ++ I ++   G+ ++V G     GD +Q      G +    A   +
Sbjct: 330 NDAYNASPTSMKAAIELIESMEGYGKKMLVLGDMLELGDLEQEFHTECGAVINPAAIDYV 389

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV-AGK 467
            T          K+ A I  G     ++       ++ E ++   E   K D+++  A +
Sbjct: 390 FT--------YGKLGAFIAAGAHRHFDQERVSHFNDKAELLQAVAEKAEKGDLILFKASR 441

Query: 468 GHETVHIVTN 477
           G +   IV +
Sbjct: 442 GMKLEEIVKD 451


>gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
 gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
          Length = 474

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 157/447 (35%), Gaps = 44/447 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V  DSR +  G +FVA  G + DGH +   AI  GA A++ +                P
Sbjct: 29  SVEFDSRKVGPGGLFVAFPGEQVDGHDYAEGAIRAGAVAVLGTRPVPA----------VP 78

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +++VD+ +  L   A  +  + P   ++ +TG+SGK+S    +  +  R G +    G  
Sbjct: 79  MVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSGKTSTKDLIAALTSRLGPTVAPPGSF 138

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +             P   YL              +   A   G  ++  D +        
Sbjct: 139 NNELGHPYTALQAGPDTRYL-------------VLEKGARGVGHIRYLCDVVPPQISVVL 185

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI    +++    AK  L   L P +  A++ ADD     V   A     RV+  
Sbjct: 186 NVGVAHIGEFGSRETIALAKGELVAAL-PADGLAVLNADDGL---VAAMATRTQARVIRY 241

Query: 271 GY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G   +     +  V     +   T+     +      L G  QV N+L AA +   +G+ 
Sbjct: 242 GEAAEADIRAVDVVLDERGRPSFTLVTPEGEAPVRLGLTGRHQVSNSLAAAAVARELGMP 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
              +   L ++ +V  R   V        +  D Y     S+E+ L+ + +I   R  V 
Sbjct: 302 LTELAIVLGEMGLVSTRRMDVFERIDSVTVIDDSYNANPASMEVALRALASIGQRRRTVA 361

Query: 388 FGC-----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA---EIIHGIPGF 439
                   G     G   +    A    D  +V       E    I      +       
Sbjct: 362 VLGYMAELGSYEHDGHVEVGRLAAELGVDRLLV-----VGEAAAPIHEGATSVRDWGGES 416

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++  ++ +A+      L   DV++V G
Sbjct: 417 VQLTDQADAVEVLRGDLRPGDVVLVKG 443


>gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
 gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
          Length = 454

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/461 (22%), Positives = 188/461 (40%), Gaps = 48/461 (10%)

Query: 3   LQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L  +  +   +++      FP+   ++ I  +S+DSR+I+ G IFVA+ G+K DGH F  
Sbjct: 2   LSQIDLEQISKILEISPGNFPVIISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAE 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+ +GA A+++         S    +  P  +V+NT K     A     +    I+AVT
Sbjct: 62  VAVEKGATALILDKK-----LSVLSTNEIPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +  +   +G     IG          +       P  L   L    +  
Sbjct: 117 GSVGKTTTKELIAAVLSTAGKVHKSIG----------NYNNEIGVPKTL---LELDHTHH 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +   + G      +  +   G  TN+G  HI    +Q+A   AK  L  + + ++
Sbjct: 164 YGVIEMAMRAKGEISLLTEITRPTIGVITNVGTAHIGRLGSQEAIAEAKCELLAQ-MSQD 222

Query: 242 SPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           S AI+  D++    +++ A      + ++ G +G  +  + +         T+ VEGK+F
Sbjct: 223 SIAILNHDNSL---LLETASTFWQGKTITYGLEGGDLSGQLINPQ------TLRVEGKEF 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG     N L A  +   + +D   + E L  +++  GR       +    +  
Sbjct: 274 P--LPLPGRHNALNYLAALAVAKVLDLDWTPLTEGL-TVNLPSGRSRRHQLPNNILILDE 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALD-LADIAIVT 416
            Y     S+   L+ ++     R I V G      +R       +GK   D   D  +V 
Sbjct: 331 TYNAGLESMLAALQLLKETPGKRHIAVLGTMKELGERSPQFHHQVGKAVKDLGIDHLVVL 390

Query: 417 DDNPRSEDPE-----------KIRAEIIHGIPGFIEKGNRI 446
            ++P++E              K   E+++ + G I+ G+RI
Sbjct: 391 VNDPQAEHIAAGADGVATSCFKTHQEVVNYLQGLIKSGDRI 431


>gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
 gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
          Length = 470

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 161/469 (34%), Gaps = 46/469 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I  ++  P       I  +S DSR I +G  F AI G++ DGH +   A+A GA  +VV
Sbjct: 1   MIAAMAGRPFGTLPEGITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVV 60

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S A       A  R   P++VVD+    L         +    I+AVTG+ GK++    +
Sbjct: 61  SEAR----LPAMGRLTVPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEML 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSH 192
           + +   SG     +               +  +   +   L+ +          V  +  
Sbjct: 117 RHVLSPSGKVHASV--------------ASFNNHWGVPLTLARMPDDTDYGVFEVGMNHP 162

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +  +  I+      T +   H+   ++ +    AK  +FE L P     ++  D+  
Sbjct: 163 GEIRPLVAMIRPYVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEP-GGHVVLNRDNDQ 221

Query: 253 SKEVMKRAHNAGC-RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + + A + G   + S G   K    L +         + +++ G+  +     PG  
Sbjct: 222 FNFLDRTAQSLGVEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRH 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVD--YAHT 365
              NAL A G+   +G D    +  L  L        R         G    +D  Y   
Sbjct: 282 IAENALAALGVVRIVGADMEKAIAALATLKPEKGRGKRHRLSMGGGNGSFTLIDESYNAN 341

Query: 366 SNSLEMILKNIRTITS---GRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             S+   +  +        GR I V       G   ++    + G +     +   +   
Sbjct: 342 PASMRAAIALLAAAEPTGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGA 401

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
           +          A +   +P  +    R    E     +  +   DVL+V
Sbjct: 402 D---------MAALKESLPESVHVEYREKTSELTEYVLNSVAPGDVLMV 441


>gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
 gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
          Length = 457

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 99/459 (21%), Positives = 162/459 (35%), Gaps = 34/459 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L     I     +  + + + +D+R I    +FVA+ G K DGH FI QA++ G  A++V
Sbjct: 11  LATGARILQQGRKNIRYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQAVSLGTTAVIV 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             A  L         +  I VV NT K     A     +    ++AVTG+ GK+S  S +
Sbjct: 71  DDAGRL-----YPDGDYTIFVVKNTLKAYQDLALYHRRRFAIPVVAVTGSVGKTSTRSLI 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +  +               +  Q  +            L      G   V +     G
Sbjct: 126 ATVLSQK-------------YNVLQTEKNFNNEIGLPRTLLQLTGEHGACVVEMGMRGLG 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +   D  +   G  TN+G+ HI+   +Q     AK  L E L   +  A++  DD   
Sbjct: 173 QIKELADIAEPTIGVVTNVGKSHIELLGSQANIAKAKGELVEAL-GTDGTAVLNGDD--- 228

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           K V   A     + +S G  +   +    +         T     +  D    + G   V
Sbjct: 229 KRVAAMAEKCKGKTVSFGIKENAPVMAGAIKTDEKGISFTCRCFDQVMDVHMSVLGRHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YNAL A  +   +G+    + + L +   VP R E +        I   Y     S+   
Sbjct: 289 YNALAAVAVGRLLGMSEHQMQKGLAEYKGVPMRQELIHLEDLTF-INDAYNANPASMAEA 347

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKI 428
           +  + ++ SGR I V G   +     +    KI    A + AD  I   D     +   I
Sbjct: 348 VHTLMSVASGRKIAVLGGMLELGDWTKAEHEKIGALLAAEKADALIALGD-----EATYI 402

Query: 429 RAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  G+    +     E      ++    D +++ G
Sbjct: 403 ADGAEQKGMKNVYKVRTHKEGAEILRKIAVAGDTILLKG 441


>gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
 gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 452

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 177/463 (38%), Gaps = 40/463 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+I+  S         +  ++S+D+R I+AG++FVA+ G+  DGH FI  AI +GA A
Sbjct: 6   LQEIIDATSGTCKGDVSLQFKDISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKGATA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    S+             + V+NT K     A+    +    ++A+TG+SGK++  
Sbjct: 66  AIVEKGRSV--------DGIICVEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTTK 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  +              ST  +  +  +            L          V +   
Sbjct: 118 EMVAAVL-------------STEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMR 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  +      +   G  TN+G  HI+   +Q+A   AK  L   L P +S AI+  DD
Sbjct: 165 GLGQIEELALIAEPTIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGP-DSVAILNEDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            + K +   A     + ++ G       +   +    +  + T     + FD   P+ GE
Sbjct: 224 HFVKAMSSIAEG---KTVTYGIHSNATVIGSHLRYKKDGIKFTCKCYDEVFDVFLPMIGE 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             VY+AL A      +G+ S+ + + L      P R E V        I  D Y    +S
Sbjct: 281 HNVYDALAAIAAGRVLGVKSSKIKKGLSDFTGTPMRQEIVAFED--IVILNDAYNANPSS 338

Query: 369 LEMILKNIRTITSGRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   +K +  +   R I     +   G   ++G R +   +A +   +     +      
Sbjct: 339 MSESIKALGQLEGKRKIAMLGDMLELGDFTEEGHRQVGRLLAEEGYSVVFTFGEAANFIA 398

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E   A + +H     +E  N    IR       K DV++V G
Sbjct: 399 KEAKLAGLEVHRCNSHLEMANAYNDIR------EKGDVILVKG 435


>gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 468

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 161/449 (35%), Gaps = 24/449 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R + AG +FVA+ G   DG  F  +A+ +GA A++V         +A   +   +
Sbjct: 31  ITTDTRKVVAGDLFVALRGEHFDGTAFAAEALERGAAAVLVDQKTPATALTALDTARGGV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV ++T +     A     K    ++A+TG++GK++       +    G           
Sbjct: 91  LVAEDTLRAYQDIAHAWRMKFDIPVVAITGSNGKTTTKDLTAAVLSGRGKV--------- 141

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +               L          V +     G             G  TN+
Sbjct: 142 ----CRTAANYNNEVGLPLTLLGITPEDTAAVVEIGMRGMGQIAALAPITAPSIGIVTNV 197

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++   + +    AK  L    +P     I+ ADD     +   A + G RV++ G 
Sbjct: 198 CEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVAAMRSSAAD-GVRVMTYGI 255

Query: 273 Q-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                +  + +  + +  +  ++ +G+  ++  PLPG   V NAL A      +G+    
Sbjct: 256 SAAADVRAEALQCMADGSRFMVTWDGERHEYAIPLPGRHNVSNALAALAAGFVLGMTPQE 315

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L  L     R+E     +    I   Y  + +S+   L+    +  GR I V G  
Sbjct: 316 MQVGLTHLTAEKMRYEVHQIGAW-TLINDAYNASPSSMRASLETTAALYPGRRIAVLGDM 374

Query: 392 GD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            +     +     +G+ A +L    +VT    +        AE   G P      +  +A
Sbjct: 375 LELGAAAEKAHRDVGRRAAELGFAMVVT--YGKQAQWTHEAAE-AAGCPACYHAASHADA 431

Query: 449 IRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                  L   D ++  G +G     I+ 
Sbjct: 432 AAYLRSHLMDGDTVLFKGSRGMRMEQIIA 460


>gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 458

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/489 (19%), Positives = 180/489 (36%), Gaps = 59/489 (12%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   ++    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +                N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAIATLWMKDVE------NPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  I        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++    +Y  D           N     ++ G  +    +   V          ++   +
Sbjct: 216 QKGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I
Sbjct: 275 TLSFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         +++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV-AG 466
            T          K+ A+I  G      K +R++A       I+    ++  +DV++V A 
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPK-DRVKAYDSKEELIKELQAVVGTKDVVLVKAS 445

Query: 467 KGHETVHIV 475
           +G +   ++
Sbjct: 446 RGMKLEEVI 454


>gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
 gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
          Length = 464

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/479 (18%), Positives = 176/479 (36%), Gaps = 54/479 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L + +  +      I      +  I     DSR ++ G++F+ I G + DGH FIP 
Sbjct: 6   MKNLTFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIPT 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              QGA  ++     +            P ++V++T   +   A+         ++ +TG
Sbjct: 66  VFEQGAAIVLSEHELTDPAG--------PYVLVESTTDAMKKLAAFYRKSLDIKVVGITG 117

Query: 123 TSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + GK+S    +  +        + +G  + +IG   TI                      
Sbjct: 118 SVGKTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIR------------------ 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S  V  + +  S  G                TN+G  H+++   +     AK   FE
Sbjct: 160 --ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFE 217

Query: 236 ELLPKESPAIIYADD---AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            ++P ++ A++ ADD   A  + V  +      +  + G               +  +  
Sbjct: 218 HMMP-DAVAVLNADDDKLATVQTVNGKPAIYYGKESASGVHKSVYTTNIENLGFDGMKAH 276

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 +FD    +PGE  VYNA+ AA + + +G+  A +   +EK   + GR  F+ T 
Sbjct: 277 FVTPEGEFDAHIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIKT- 335

Query: 353 SRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             G  +  D Y     S++  ++ + +   GR I V G  G+    ++ +  ++   + +
Sbjct: 336 -HGMTVIDDCYNANPVSMKSSIE-VLSHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGE 393

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I T          ++  E   G              +R    +  +  + + D ++V
Sbjct: 394 NHIHTLFAA-----GELAKEYAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILV 447


>gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 457

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/484 (18%), Positives = 187/484 (38%), Gaps = 51/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+  +++      P Q+ +  I+ V++D+R ++   +F+ + G   +GH F+PQA   
Sbjct: 5   TVKNIAKMVKGTLTNP-QYEQTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQAFEA 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++   +            N  +++VD+T   L   A     +    ++ VTG++GK
Sbjct: 64  GVAAVLWDRS------EPNPPENQAVILVDDTLSALQQLAKAYLQELGTRVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++    +  +        +  G  +  IG   T+                    L+    
Sbjct: 118 TTTKDMIHAVLGTRYRVHKTGGNFNNHIGLPLTV--------------------LAMPED 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  + +  S+ G            A   TN+G  H+    +++    AK+ +   L  
Sbjct: 158 TEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL-K 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++   I   D+     ++++ ++   +    G Q  +  L+ V         TI  +G +
Sbjct: 217 EDGVLIYIGDEP----LLQKTYSCQTKTYGAGAQNDYQ-LQDVSQSEEGTHFTI--KGME 269

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  V NA+ A       GI      + L  L V   R E + T+S    I 
Sbjct: 270 KTFFIPILGKHNVMNAMAAIAAGAYFGITPEDAAKGLSGLKVTGMRLELIKTDSGISIIN 329

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
             Y  +  S++  ++   ++   G+ ++V G     GD ++      G  I+ +  D   
Sbjct: 330 DAYNASPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPEKIDRVF 389

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVH 473
                        ++      +  + EK + ++A++   E  +K D+++  A +G +   
Sbjct: 390 TYGKLGAFIAEGALKHFEKERVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEE 446

Query: 474 IVTN 477
           IV +
Sbjct: 447 IVKD 450


>gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 477

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 161/468 (34%), Gaps = 44/468 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++I  ++  P       I  +S DSR I  G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DMIAAMAGRPFGTLPEGITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMAMANGASLLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VV++    L         +    I+AVTG+ GK++    
Sbjct: 69  VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASS 191
           ++ +   SG     +               +  +   +   L+ +          V  + 
Sbjct: 125 LRHVLSPSGKVHASV--------------ASFNNHWGVPLTLARMPDDTDYGVFEVGMNH 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +  ++ I+      T +   H+   +  +    AK  +FE L P     ++  D+ 
Sbjct: 171 PGEIRPLVEMIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEP-GGHVVLNRDND 229

Query: 252 YSKEVMKRAHNAGC-RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               + + A + G   + S G   K    L +         + +++ G+  +     PG 
Sbjct: 230 QFNFLDRTAQSLGIEHIHSFGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTS 366
               NAL A G+   +G D    +  L  L    GR     +   S    +  + Y    
Sbjct: 290 HIAENALAALGVVRIVGADMEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANP 349

Query: 367 NSLEMI---LKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            S+      L      + GR I V       G    +    ++  +     +   +    
Sbjct: 350 ASMRAAIALLAASEPTSRGRRIAVLGDMLEMGEYAQKVHTDLVVPLLAAGIEHVWL---- 405

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
                     A +   +P  +    R    E     +  +   DVL+V
Sbjct: 406 -----AGAEMAALKESLPESVHVEYRENTGELTDYVLNSVAPGDVLMV 448


>gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
 gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
          Length = 458

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 178/483 (36%), Gaps = 49/483 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 6   LKQVEQMVNGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 65  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 118

Query: 128 SVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           S    V  +        +  G  +  IG   TI +  ++                     
Sbjct: 119 STKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +
Sbjct: 160 -VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--Q 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D           N     ++ G  +    +   V          ++   ++
Sbjct: 217 EGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDEN 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I 
Sbjct: 276 ISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIIN 335

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIV 415
             Y  +  ++E     +  +      +V         D++      +GK+        + 
Sbjct: 336 DAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVF 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETV 472
           T          +I        P    K   N+ E ++    +++ +DV+++ A +G +  
Sbjct: 396 T----YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLE 451

Query: 473 HIV 475
            ++
Sbjct: 452 EVI 454


>gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
 gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
          Length = 458

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 181/484 (37%), Gaps = 49/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + + L  L +   R E V  +S    I
Sbjct: 275 NISFYIPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +    + IVV G     GD++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHET 471
            T          +I        PG   K   N+ E ++    ++   DV++V A +G + 
Sbjct: 395 FT----YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKL 450

Query: 472 VHIV 475
             ++
Sbjct: 451 EEVI 454


>gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
 gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
          Length = 458

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 181/484 (37%), Gaps = 49/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVKKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + + L  L +   R E V  +S    I
Sbjct: 275 NISFYIPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +    + IVV G     GD++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHET 471
            T          +I        PG   K   N+ E ++    ++   DV++V A +G + 
Sbjct: 395 FT----YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKL 450

Query: 472 VHIV 475
             ++
Sbjct: 451 EEVI 454


>gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
 gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
          Length = 458

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 181/484 (37%), Gaps = 49/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNVGEAHLMDLGSREAIAEAKLEIVAGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ E +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-E 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + + L  L +   R E V  +S    I
Sbjct: 275 NISFYIPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTVI 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +    + IVV G     GD++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHET 471
            T          +I        PG   K   N+ E ++    ++   DV++V A +G + 
Sbjct: 395 FT----YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKL 450

Query: 472 VHIV 475
             ++
Sbjct: 451 EEVI 454


>gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
 gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
          Length = 465

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/483 (17%), Positives = 178/483 (36%), Gaps = 56/483 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  E+       P    + ++ E+++DSR +  G +FVAI G K DGH FIP 
Sbjct: 1   MKNLTLRNITEVCGGTYHGPEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFIPG 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           + A GA A +           A   ++  +++V +T + +   A     + P +++ + G
Sbjct: 61  SFADGALAALAE--------VAPAETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGIIG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    V  +  +      +     T  +F         + + +      +  +  
Sbjct: 113 SVGKTSTKEMVAAVLAQ------KYRTLKTEGNF--------NNEVGVPLTAFRMREEDE 158

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     +H  + HRL  I +     FTN+G  H+++  ++     AK  +F+  + ++
Sbjct: 159 IGVLEMGINHFGEMHRLAKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVFD-FMDEK 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              I+  DD     + +    A  R         +         V          I  E 
Sbjct: 218 GHVIVNGDDDKLSTISEVHGVAPVRFGIGEQGYSHPNDVWADGIVSHGLEGISCVIHTEA 277

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F+ + P  G   +YNAL    + +  G+    +   +E    + GRF  +        
Sbjct: 278 GSFEVMIPSSGRHMIYNALAGTAVGLVYGLTLEQIRSGIESYMPLSGRFHII--KGDSYT 335

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAI 414
           +  D Y     S++  +  ++     R+ ++   G   ++++     +G  A +     I
Sbjct: 336 VIDDCYNANPGSMKASISILKEALGRRVAILGDMGELGEKEKAYHEEVGAYAAEQGIDLI 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA---------IRTAI----EMLNKQDV 461
                        +   +      ++E     EA         +   +    E+L K D 
Sbjct: 396 CC--------VGALSEAMAKAAVDYMETH--PEAHCLVRHYPTVEALMDDCGEILEKNDT 445

Query: 462 LVV 464
           ++V
Sbjct: 446 ILV 448


>gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
 gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
          Length = 458

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 93/489 (19%), Positives = 180/489 (36%), Gaps = 59/489 (12%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   ++    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +                N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAIATLWMKDVE------NPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  I        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++    +Y  D           N     ++ G  +    +   V          ++   +
Sbjct: 216 QKGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I
Sbjct: 275 TSSFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         +++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV-AG 466
            T          K+ A+I  G      K +R++A       I+    ++  +DV++V A 
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPK-DRVKAYDSKEELIKELQAVVGTKDVVLVKAS 445

Query: 467 KGHETVHIV 475
           +G +   ++
Sbjct: 446 RGMKLEEVI 454


>gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 468

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 178/483 (36%), Gaps = 49/483 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 16  LKQVEQMVNGTGL-AEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 74

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 75  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 128

Query: 128 SVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           S    V  I        +  G  +  IG   TI +  ++                     
Sbjct: 129 STKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------- 169

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +
Sbjct: 170 -VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--Q 226

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D           N     ++ G  +    +   V          ++   ++
Sbjct: 227 EGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDEN 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I 
Sbjct: 286 ISFYLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIIN 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIV 415
             Y  +  ++E     +  +      +V         +++      +GK+        + 
Sbjct: 346 DAYNASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVF 405

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETV 472
           T          +I        P    K   N+ E +R    +++ +DV+++ A +G +  
Sbjct: 406 T----YGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLE 461

Query: 473 HIV 475
            ++
Sbjct: 462 EVI 464


>gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 458

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 178/483 (36%), Gaps = 49/483 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 6   LKQVEQMVNGTGL-AEQYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDKAVENG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 65  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 118

Query: 128 SVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           S    V  +        +  G  +  IG   TI +  ++                     
Sbjct: 119 STKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +
Sbjct: 160 -VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--Q 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D           N     ++ G  +    +   V          ++   ++
Sbjct: 217 EGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDEN 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I 
Sbjct: 276 ISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIIN 335

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIV 415
             Y  +  ++E     +  +      +V         D++      +GK+        + 
Sbjct: 336 DAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVF 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETV 472
           T          +I        P    K   N+ E ++    +++ +DV+++ A +G +  
Sbjct: 396 T----YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLE 451

Query: 473 HIV 475
            ++
Sbjct: 452 EVI 454


>gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 456

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/484 (17%), Positives = 179/484 (36%), Gaps = 50/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   +++      P+ + +  I   ++D+R ++   +F+ + G   +GH F+PQA  +
Sbjct: 5   TVKRIADMVKGTLTNPV-FEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEK 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++   +               +++VD+T + L   A     +    ++ VTG++GK
Sbjct: 64  GVSAVLWDRS------EPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++    +  +        + +G  +  IG   T+                    L+    
Sbjct: 118 TTTKDMLHAVLGTQYRVHKTAGNFNNHIGLPLTV--------------------LAMPED 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  + +  S+ G         +  A   TN+G  H+    +++    AK+ +   L  
Sbjct: 158 TEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKLEIINGL-R 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++     + D+   +E         CR  + G +G    L+       ++    +++G D
Sbjct: 217 EDGVLFYFGDEPLLRE-----KAYTCRTTTYG-EGADNDLRLKEIKQAEEGTYFTIDGID 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G   V NA+ A    I  GI        L +L V   R E V T +    + 
Sbjct: 271 RSFFIPVLGRHNVMNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVN 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIV 415
             Y  +  S++  ++ I T+   R  ++         D ++      G          + 
Sbjct: 331 DAYNASPTSMKAAIELIETMKGYRKKMLVLGDMLELGDEEKAFHEECGAAINPAEIDHVF 390

Query: 416 TDDNPRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVH 473
           T     +   +  R     G +  +++K   +EAIR   E     D+L+  A +G +   
Sbjct: 391 TYGTLGAFIADGARKHFEEGRVSHYLDKKELLEAIR---ENAASGDLLLFKASRGMKLEE 447

Query: 474 IVTN 477
            V +
Sbjct: 448 TVKD 451


>gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 458

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 175/479 (36%), Gaps = 41/479 (8%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 6   LKQVEQMVNGTGL-AEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 65  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 118

Query: 128 SVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           S    V  I        +  G  +  IG   TI +  ++                     
Sbjct: 119 STKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +
Sbjct: 160 -VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--Q 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D           N     ++ G  +    +   V          ++   ++
Sbjct: 217 EGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDEN 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I 
Sbjct: 276 ISFYLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIIN 335

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             Y  +  ++E     +  +      +V          +          L D A ++   
Sbjct: 336 DAYNASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVF 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
                  +I        P    K   N+ E +R    +++ +DV+++ A +G +   ++
Sbjct: 396 TYGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVI 454


>gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 454

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 175/479 (36%), Gaps = 41/479 (8%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 2   LKQVEQMVNGTGL-AEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 61  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 114

Query: 128 SVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           S    V  I        +  G  +  IG   TI +  ++                     
Sbjct: 115 STKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +
Sbjct: 156 -VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--Q 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D           N     ++ G  +    +   V          ++   ++
Sbjct: 213 EGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDEN 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I 
Sbjct: 272 ISFYLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIIN 331

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             Y  +  ++E     +  +      +V          +          L D A ++   
Sbjct: 332 DAYNASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVF 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
                  +I        P    K   N+ E +R    +++ +DV+++ A +G +   ++
Sbjct: 392 TYGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVI 450


>gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           denitrificans OS217]
 gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella denitrificans OS217]
          Length = 457

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 160/394 (40%), Gaps = 31/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I  VS+DSR I A  +FVA+ G + D H F   AI  GA+A++V    +L     
Sbjct: 19  GENLTIANVSTDSRAIPAACLFVALKGERFDAHDFAATAIENGAKALLVERELAL----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P L+V N++K +    + +        +A+TG++GK+SV   +  I  +     
Sbjct: 74  ----DIPQLIVANSQKAMGEIGALVRDIVSPICVALTGSNGKTSVKEMLASILSQGHQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G          +       P+ L + LS     GV    + A+  G   +    ++ 
Sbjct: 130 YTAG----------NFNNEIGVPLTLLR-LSQADEYGV--FELGANHKGEIDYTSSLVRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+G  H++   + +    AK  +F  L   +  A+I ADDA+ + +  +A    
Sbjct: 177 RVALVNNIGSAHLEGFGSIEGIAEAKSEIFNHL-SADGVAVINADDAFCELMKTKAKA-- 233

Query: 265 CRVLSVGYQGKFIHLKKVCAIHN----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            + LS   +       +   ++         TI  +G+      PL G  QV NAL A+ 
Sbjct: 234 FKQLSFSREANTNADIQATGLNMNAAGCYGFTIHYQGQQLAVQLPLAGIHQVSNALAASA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +C+A+GI    ++  L +L  V GR +   T  R   I   Y    +S+   +  ++   
Sbjct: 294 MCLALGISLTDIVSGLARLAPVKGRMQP-HTLGRLLVIDDSYNANPSSVSAAIDWLKN-R 351

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G   +V G  G+       +  ++     +  I
Sbjct: 352 DGFCCLVLGDLGELGDNAAHLHAQVGQQAKEAQI 385


>gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
 gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
          Length = 468

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 172/470 (36%), Gaps = 48/470 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +        
Sbjct: 28  LAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLWMKDV--- 84

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137
              A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +    
Sbjct: 85  ---ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLATK 141

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
               +  G  +  IG   TI +  ++                      V  + +  SS G
Sbjct: 142 FKVQKTEGNFNNHIGLPLTILNLEENTE--------------------VAVLEMGMSSRG 181

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +      +  A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D   
Sbjct: 182 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPL 239

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                   N     ++ G  +    +   V          ++   ++  F  P+ G+  V
Sbjct: 240 LTNRVPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNV 298

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 299 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 358

Query: 373 LKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +      +V         D++      +GK+        + T          +I
Sbjct: 359 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT----YGRLGAQI 414

Query: 429 RAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
                   P    K   N+ E ++    +++ +DV+++ A +G +   ++
Sbjct: 415 AEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVI 464


>gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter
           propionicus DSM 2379]
 gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter propionicus DSM 2379]
          Length = 469

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/463 (20%), Positives = 169/463 (36%), Gaps = 34/463 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+    +      R  +++ VS+DSR + AG +FV + G + DGH FIPQ  A+G  A
Sbjct: 4   IAEIAAATAGGFQGDRSARVSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAKGVAA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++       Q F   I     ++ V +T   L   A+    +    ++ +TG++GK++  
Sbjct: 64  VLAD-----QSFDGEIPPGLTVVRVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTK 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +++G      G  + +             P  L +  +   S G   + +  S
Sbjct: 119 EMLATILEQTGPGLKTAGNLNNL----------IGLPQMLFRLDA---SHGWAVLEMGMS 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G      +      G   N    H++   + +    AK  L   L P    AII ADD
Sbjct: 166 EPGEIDRLAEVAAPQTGIVLNACPAHLESMGSVEGVARAKGELLLRL-PAGGCAIINADD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGE 309
                +  +    G R L+ G     +   ++ ++    Q   + +       +    G 
Sbjct: 225 PL---IAGQPSPPGVRRLTFGLGDADVRATEITSLGIGGQSFLLHLGEIVLPVVLWSYGR 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSN 367
             VYNAL AA     +GI + L+   LE+      RF+       GG + +D  Y     
Sbjct: 282 HAVYNALAAAAAAHGLGIAAELIQSGLERFRPYDKRFQLEDV---GGLVLIDDSYNANPA 338

Query: 368 SLEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           S+E  L  +  +  G    V        G  +      +G  A  +AD   +        
Sbjct: 339 SMEAALTTLGELKGGGRAFVALGDMLEMGSNEAELHRALGVRAAAVADRLYLCGPLMAHA 398

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               + A ++      +   +  E   + +      D ++V G
Sbjct: 399 AVGALSAGMVE--EQVMRIPDHDEIAASILRQARPGDFVLVKG 439


>gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 459

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/471 (19%), Positives = 178/471 (37%), Gaps = 33/471 (7%)

Query: 8   YKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           Y    ++   +    +Q R + +I  VS +SR    G +F A+ G++ DGH F+P+A+  
Sbjct: 2   YSRLLDIARAIEGNIIQGRPDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRN 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A VVS   SL            +++V + +K L + A     +   +++ VTG+ GK
Sbjct: 62  GALAAVVSRPVSLPQG----LGERGLILVRDVKKALQMLARWHRQRFKLHLVGVTGSVGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++         +       +     T  ++  +  +           L          V 
Sbjct: 118 TTTKDLTATCLE------ARFQTLKTEGNYNNEIGVP-------LTLLRLDHRYEACVVE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +   + G  +          G   N+   H++   + +    AK  LF+  + +     I
Sbjct: 165 MAMRNLGEIEELASIALPTCGIIVNVEPVHLENLGSMERIAQAKCELFKY-VDERGFVAI 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             D+     +++ A     + +  G+       L  V +   + ++  S+ G+  +F  P
Sbjct: 224 NGDNPL---LVEAAEKYAVKKVRFGWGANCDDRLLDVNSSSEETRIKASLAGQAAEFCLP 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
            PG    YN + AAG+ + +G+D A +   +        R   + T   G  I  D Y  
Sbjct: 281 FPGSHLAYNVIAAAGVAVRLGVDLADIQSKIRSFSPSSRRLN-IKTGLGGITIIDDCYNA 339

Query: 365 TSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              S++  L+ +  + +GR  V     ++  G    QG R +  K A    +  +   + 
Sbjct: 340 NPVSMKAGLEVLSDVAAGRYRVAVLGDMYELGSYEVQGHREVGYKAAELGVERLVTVGEL 399

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
            R        A +       +   ++  AI      L  + V+++ A +G 
Sbjct: 400 ARHIGEAAKEAGLDK--ERILHFSDKELAIAYLKSDLPAEAVVLIKASRGM 448


>gi|328954771|ref|YP_004372104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
 gi|328455095|gb|AEB06289.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
          Length = 518

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 127/484 (26%), Positives = 209/484 (43%), Gaps = 27/484 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-------AYSLQDF 82
           +  +S DSR  +   +FV   G       ++  AI +GA A +  +         S    
Sbjct: 40  VRGMSIDSRATEMDNLFVC-KGAAFK-PAYLTAAIRRGASAFLCQTQAAAPACDLSAPAE 97

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
            A    +TP L+V + R  ++L A  +YG       I+ VTGT GK++V   ++ I + +
Sbjct: 98  LAAAAPDTPGLIVSDLRASMALIAPIIYGHPDRALRIVGVTGTKGKTTVTFMLRSILRAA 157

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G+    +G           ++  TTP    L + L      G + + +E SS  L   R+
Sbjct: 158 GMEPSMVGSIEVDDGVERHESHNTTPEAPDLWRHLRNTVDSGRSVMIMEVSSQALKYDRV 217

Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            GI L  G F N+G DHI    H   + Y  +K+R+F++       A++  D  +  EV+
Sbjct: 218 LGITLDVGCFLNIGSDHISPIEHPNFEDYLASKLRIFDQ----SETAVVNLDTDHLVEVL 273

Query: 258 KRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           KRA  A     +S       +   ++          I    +  +    + G F V NAL
Sbjct: 274 KRAQTAGKLVTISSRRTDADLRADQISVASEHIGFDIVERARRHEIALGMSGLFNVDNAL 333

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L   +G+D   +   L +   VPGR E   +        VDYAH   S  ++ ++I
Sbjct: 334 AAAALARELGVDYTAIATGLSRAR-VPGRMERFRSPDGRIVSLVDYAHNELSFRLLFESI 392

Query: 377 R-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                   +I VFG  GD+   +R  + +IA   AD+ I T+D+P  E  E I A++   
Sbjct: 393 ESEYPDRYVIAVFGAPGDKAFDRRHELPRIAGKSADLLIYTEDDPGGERVEDICAQLADN 452

Query: 436 IP---GFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            P    F    NR +A+  A E     +   ++++  KG E     ++G  +++ D ++ 
Sbjct: 453 TPTGTAFEIVVNREQAVERAFEAARSHEGPALVLLLAKGDEHRQRRSDGYARIASDLELA 512

Query: 490 REIL 493
           R  L
Sbjct: 513 RRHL 516


>gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 460

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 181/481 (37%), Gaps = 44/481 (9%)

Query: 14  LINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+ +    PM   +  +  +V +DSR I  G +FVA+ G K DGH F+ QA+  GA A V
Sbjct: 6   LLKRALQVPMALEDGEEFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVAS 131
           VS      +    + ++  + VV +T       ASR    K    ++A+TG++GK+S   
Sbjct: 66  VS------EVPEGVAADRCV-VVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKD 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +    G     I   +  ++      +  P  +   +  + ++        VE   
Sbjct: 119 CIAAVL---GERYRVIKTQANFNN-----EIGLPKTLLTIREDTEMA-------VVEMGM 163

Query: 192 HGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL Q R         A   TN+G  H++   + +    AK  + E+  PK   A +  D
Sbjct: 164 RGLGQIRAMKHIAYPDAAVITNVGDTHLELLGSLENIAKAKSEILEDFTPKN-HAFLNGD 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPL 306
           D     +       G  V + G      +   ++ A   +   T    + G       PL
Sbjct: 223 DPRVSVM-----ETGAAVHTYGIDSDADVKAVEISADGLRTVFTYRSRITGATQKVQLPL 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G   V NAL A  +    G+  A +   LE L +   R E +        +  D Y  +
Sbjct: 278 IGRHNVMNALAAVAVGEVYGVPDAAIARGLENLKMTGMRQEILHFG--PVTVINDAYNAS 335

Query: 366 SNSLEMILKN----IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             S+E  L+     +++   GR I V     +     +    ++    +   +       
Sbjct: 336 PASMEAALRTLGDVVKSQGKGRAIAVLADMLELGAHSQSGHAQVGTWCSQYGVTELVCYG 395

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK-GHETVHIVTNGEK 480
            E      A    G+P      +R EA R    ++   DV+++ G  G E   ++    +
Sbjct: 396 PESRFMAEAAQKAGVP-VHYAQDRGEAARVLARLVRPDDVVLLKGSHGMEVFKLIDEVFR 454

Query: 481 K 481
           K
Sbjct: 455 K 455


>gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
 gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
          Length = 462

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 92/470 (19%), Positives = 184/470 (39%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+
Sbjct: 4   IKLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA   +VS    +      +  ++ ++ V+NT K L   A    GK    ++A+
Sbjct: 57  EMAIEKGAALCIVS---EINFSEGKVSKSSYVIKVENTNKALLDLAKYYRGKLDIKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F                      S 
Sbjct: 114 TGSTGKTSTKDLVAAVLSE------KYKVFKTEGNF-------NNEIGLPLMIFKLDKSY 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  +      +  +  K      TN+G  HI+   +++    AK+ +  +   K
Sbjct: 161 DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEI-TDFFCK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +S  II  DD    +++    +   +V  +G   KF        +  +  +  I  +GK 
Sbjct: 220 DSILIINGDD----DLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKT 275

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG+  V N+L A      + I+   +   ++ L     R + V    +G  
Sbjct: 276 AYRCFSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
           I  D Y  + +S++  +  ++ I   R I + G   +          +++    +  I  
Sbjct: 334 IINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGAEGYRAHREVSEYAREKGIDL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 394 LFSIGEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
 gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
          Length = 454

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 178/483 (36%), Gaps = 49/483 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 2   LKQVEQMVNGTGL-AEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 61  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 114

Query: 128 SVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           S    V  I        +  G  +  IG   TI +  ++                     
Sbjct: 115 STKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +
Sbjct: 156 -VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--Q 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D           N     ++ G  +    +   V          ++   ++
Sbjct: 213 EGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDEN 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I 
Sbjct: 272 ISFYLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIIN 331

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIV 415
             Y  +  ++E     +  +      +V         +++      +GK+        + 
Sbjct: 332 DAYNASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVF 391

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETV 472
           T          +I        P    K   N+ E +R    +++ +DV+++ A +G +  
Sbjct: 392 T----YGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLE 447

Query: 473 HIV 475
            ++
Sbjct: 448 EVI 450


>gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CNPAF512]
          Length = 479

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 162/470 (34%), Gaps = 46/470 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++I  ++  P       I  +S DSR I +G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DMIAAMAGRPFGALPEGITGISIDSRSIASGEAFFAIKGDRVDGHDYASMAMANGASLLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VV++    L         +    I+AVTG+ GK++    
Sbjct: 69  VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASS 191
           ++ +   SG     +               +  +   +   L+ +          V  + 
Sbjct: 125 LRHVLSPSGKVHASV--------------ASFNNHWGVPLTLARMPDDTDYGVFEVGMNH 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +  +  I+      T +   H+   ++ +    AK  +FE L       ++  D+ 
Sbjct: 171 PGEIRPLVAMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGL-EAGGHVVLNRDND 229

Query: 252 YSKEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               + + A + G   + S G   K    L +         + +++ G+  +     PG 
Sbjct: 230 QFNFLDRTAQSLGIENIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVD--YAH 364
               NAL A G+   +G D    +  L  L        R      +  G    +D  Y  
Sbjct: 290 HIAENALAALGVVRIVGADLEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNA 349

Query: 365 TSNSLEMILKNIRTITS---GRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              S+   +  +        GR I V       G   ++    + G +     +   +  
Sbjct: 350 NPASMRAAIALLAAAEPSGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAG 409

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            +          A +   +P  +    R    E     +  +   DVL+V
Sbjct: 410 AD---------MAALKESLPESVHVEYREKTSELTDYVLNAVAPGDVLMV 450


>gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
 gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
          Length = 458

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 178/483 (36%), Gaps = 49/483 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 6   LKQVEQMVNGTGL-AEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 65  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 118

Query: 128 SVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           S    V  I        +  G  +  IG   TI +  ++                     
Sbjct: 119 STKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +
Sbjct: 160 -VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--Q 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D           N     ++ G  +    +   V          ++   ++
Sbjct: 217 EGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDEN 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I 
Sbjct: 276 ISFYLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIIN 335

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIV 415
             Y  +  ++E     +  +      +V         +++      +GK+        + 
Sbjct: 336 DAYNASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVF 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETV 472
           T          +I        P    K   N+ E +R    +++ +DV+++ A +G +  
Sbjct: 396 T----YGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLE 451

Query: 473 HIV 475
            ++
Sbjct: 452 EVI 454


>gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
 gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
          Length = 468

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 176/387 (45%), Gaps = 21/387 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V+ DSR + AG  FVAI G ++DG+ +I  A+ QGAE +        ++        
Sbjct: 7   ISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVVYTEREIDHRE-------- 58

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             ++ VDN RK L+  A+++Y    E++  + VTGT+GK++    ++++    G ++  I
Sbjct: 59  VQVVKVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGLI 118

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +    ++  LTTP    +   +  +    V   ++E SSHG+  HR++G+    
Sbjct: 119 GTVKIKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHRVEGLDFDI 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             +TNL +DH+D H+  + Y   K  LF++   +ES A+I  DD Y+  +M         
Sbjct: 179 VVYTNLTKDHLDLHEDFEDYLATKKELFKQ-AGEESTALINLDDEYADRIMS---GLSAE 234

Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTIS---VEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           V++ G+  +  I + +        +  I       + F+    L G   +YNAL AA + 
Sbjct: 235 VITYGFSDRADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAVG 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +  G+    +   L++ +    R E +        I  D AH   +   + + I+ +   
Sbjct: 295 LIYGLSVEEIKAQLKEFNPFFRRLEVI--YDDKFTIIDDCAHNPGNYRAVFETIKELDYD 352

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDL 409
           R+ ++    G+R         +I    
Sbjct: 353 RLYIINAIRGNRGITVSRENAEIISKY 379


>gi|301165430|emb|CBW25001.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Bacteriovorax marinus SJ]
          Length = 461

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 196/414 (47%), Gaps = 42/414 (10%)

Query: 88  SNTPILVVD--NTRKFLSLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               I VVD  +      L A+     K    +  +TGT+GK++V+    Q+    G  S
Sbjct: 76  EGVNIWVVDPSDFLWAQDLIANEIYPDKLKIKLAGITGTNGKTTVSYLAMQLATLLGYPS 135

Query: 145 FQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             IG      S      D   TTPS + L K +          + +E SSH L Q+RL+ 
Sbjct: 136 ISIGTIGVRDSKNILEEDILSTTPSYLELRKIIHR-YQDDYKFIFMEVSSHALAQNRLNK 194

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++L + ++T+  +DH+DYH+T + YF AK+++ E            +DD     ++  + 
Sbjct: 195 VRLKSCAWTSFSQDHLDYHKTNEEYFKAKLKILES-----------SDDKNL--IVPSSE 241

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            +   +L           +K+   +  + +    +             +   N  VA  L
Sbjct: 242 KSLLALL-----ADNNVSRKIVEPYFDECLEAGFK-----------ASYNQANLSVAIAL 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TIT 380
           C  + I  ++  + L KL +  GRFE +  N     + VDYAHT ++LE I   I+   +
Sbjct: 286 CEVL-IGESIDRKLLSKLSLPAGRFEAIKYNEH--IVIVDYAHTPDALENICGTIKKDFS 342

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GF 439
           S  + V+FGCGGDRD+ KRP+MGK     AD  IVT DNPR+E+P  I  +I  GI   +
Sbjct: 343 SFELRVIFGCGGDRDRSKRPLMGKAVSKYADNIIVTSDNPRTEEPSSIIDDITPGISRDY 402

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I   +R  AI  ++E L++  V+++AGKGHE    V  G K    D + + +I+
Sbjct: 403 IRIEDRRLAIEKSLEDLSRPTVVLIAGKGHEEYQDVK-GIKHHFSDKEEVMKII 455


>gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 458

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 92/489 (18%), Positives = 179/489 (36%), Gaps = 59/489 (12%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMVNGTGL-AEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++   +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVALQATGTHFKMN-RDE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         +++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AG 466
            T          K+ A+I  G         R++A       ++ L      +DV+++ A 
Sbjct: 395 FT--------YGKLGAQIAEGAKINFPIE-RVKAYDNKEELVKELQAVVDVKDVVLIKAS 445

Query: 467 KGHETVHIV 475
           +G +   ++
Sbjct: 446 RGMKLEEVI 454


>gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 477

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 159/468 (33%), Gaps = 44/468 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++I  ++  P       I  +S DSR    G  F AI G++ DGH +   A+A GA  +V
Sbjct: 9   DMIAAMAGRPFGTLPEGITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMAMANGASLLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A       A  R   P++VV++    L         +    I+AVTG+ GK++    
Sbjct: 69  VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASS 191
           ++ +   SG     +               +  +   +   L+ +          V  + 
Sbjct: 125 LRHVLAPSGKVHASV--------------ASFNNHWGVPLTLARMPEDTDYGVFEVGMNH 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +  +  I+      T +   H+   +  +    AK  +FE L P     ++  D+ 
Sbjct: 171 PGEVRPLVAMIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEP-GGHVVLNRDND 229

Query: 252 YSKEVMKRAHNAGC-RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               + + A + G   + S G   K    L +         + +++ G+  +     PG 
Sbjct: 230 QFNFLDRTAQSLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTS 366
               NAL A G+   +G D    +E L  L    GR     +        +  + Y    
Sbjct: 290 HIAENALAALGVVRIVGADMQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANP 349

Query: 367 NSLEMI---LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVTDDN 419
            S+      L        GR I V G   +     + +   +A        +   +    
Sbjct: 350 ASMRAAIALLAASEPTGRGRRIAVLGDMLEMGDYAQKVHTDLAVPLLAAGIEHVWL---- 405

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
                     A +   +P  +    R    E     +  +   DVL+V
Sbjct: 406 -----AGAEMAALKESLPESVHVEYRENTSELTDYVLNSVAPGDVLMV 448


>gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
 gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
          Length = 454

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 172/470 (36%), Gaps = 48/470 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +        
Sbjct: 14  LAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLWMKDV--- 70

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137
              A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +    
Sbjct: 71  ---ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLATK 127

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
               +  G  +  IG   TI +  ++                      V  + +  SS G
Sbjct: 128 FKVQKTEGNFNNHIGLPLTILNLEENTE--------------------VAVLEMGMSSRG 167

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +      +  A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D   
Sbjct: 168 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPL 225

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                   N     ++ G  +    +   V          ++   ++  F  P+ G+  V
Sbjct: 226 LTNRVPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNV 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 285 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 344

Query: 373 LKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +      +V         D++      +GK+        + T          +I
Sbjct: 345 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT----YGRLGAQI 400

Query: 429 RAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
                   P    K   N+ E ++    +++ +DV+++ A +G +   ++
Sbjct: 401 AEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVI 450


>gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
 gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
          Length = 458

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 172/470 (36%), Gaps = 48/470 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +        
Sbjct: 18  LAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLWMKDV--- 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137
              A    N P++ V++T   L + A     +    ++ VTG++GK+S    V  +    
Sbjct: 75  ---ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLATK 131

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
               +  G  +  IG   TI +  ++                      V  + +  SS G
Sbjct: 132 FKVQKTEGNFNNHIGLPLTILNLEENTE--------------------VAVLEMGMSSRG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +      +  A   TN+G  H+    +++A   AK+ +   L  +E    +Y  D   
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPL 229

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                   N     ++ G  +    +   V          ++   ++  F  P+ G+  V
Sbjct: 230 LTNRVPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348

Query: 373 LKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +      +V         D++      +GK+        + T          +I
Sbjct: 349 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT----YGRLGAQI 404

Query: 429 RAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
                   P    K   N+ E ++    +++ +DV+++ A +G +   ++
Sbjct: 405 AEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVI 454


>gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 456

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 167/466 (35%), Gaps = 32/466 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++   +       P    + ++  V +DSR  + G +FV IVG + D H FIPQ
Sbjct: 1   MKNLTLENIARVCGGTYYGPADKLQEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A +        DF        P + V+++ + +   A     +    ++ +TG
Sbjct: 61  VMEAGALATLSERVLDNADF--------PYIAVESSLQAVKDIAEFYLKQLQIPVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T  +F                         +
Sbjct: 113 SVGKTSTKEVIASVLNQ------KYHTLKTQGNF-------NNELGLPLTVFRLRDGDEI 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G         +      TN+G  H++    +     AK  +F+ L P E 
Sbjct: 160 AVLEMGISDFGEMTRLAQIARPDTCVITNIGTCHLENLGDRNGVLKAKTEIFKFLRP-EG 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  DD     V K           +  + +    K V         TI +    F  
Sbjct: 219 HIVLNGDDDKLITV-KEYEKIKPVFFGMSNECQVYGDKIVSRGLKGMTCTIHLGDTAFTV 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+PG   VYNAL AA +    G+ +  +   +E L  + GRF  + T+     I  D 
Sbjct: 278 DIPMPGRHMVYNALAAAAVGNIYGLTTDQIKAGIESLEPISGRFRMIETDK--FLIVDDC 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL-ADIAIVTDD 418
           Y     S++  L  ++     +I V+   G   +        +G+ A     D+ I T  
Sbjct: 336 YNANPMSMKASLDVLQDGAGRKIAVLGDMGELGENEVQLHEEVGEHAGKCDIDVLICTGK 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             R+      RA+  +     I + +R   +      +   D ++V
Sbjct: 396 LCRN---MAERAQRTNPDLKVIYEPDRESLLEHLEGYVQDGDTILV 438


>gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
 gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
          Length = 454

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 178/483 (36%), Gaps = 49/483 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 2   LKQVEQMVNGTGL-EEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 61  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 114

Query: 128 SVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           S    V  +        +  G  +  IG   TI +  ++                     
Sbjct: 115 STKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +
Sbjct: 156 -VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--Q 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D           N     ++ G  +    +   V          ++   ++
Sbjct: 213 EGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDEN 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I 
Sbjct: 272 ISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIIN 331

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIV 415
             Y  +  ++E     +  +      +V         D++      +GK+        + 
Sbjct: 332 DAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVF 391

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETV 472
           T          +I        P    K   N+ E ++    +++ +DV+++ A +G +  
Sbjct: 392 T----YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLE 447

Query: 473 HIV 475
            ++
Sbjct: 448 EVI 450


>gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652]
 gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CIAT 652]
          Length = 470

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 88/469 (18%), Positives = 161/469 (34%), Gaps = 46/469 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I  ++  P       I  +S DSR I +G  F AI G++ DGH +   A+A GA  +VV
Sbjct: 1   MIAAMAGRPFGALPEGITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVV 60

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S A       A  R   P++VV++    L         +    I+AVTG+ GK++    +
Sbjct: 61  SEAR----LPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEML 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSH 192
           + +   SG     +               +  +   +   L+ +          V  +  
Sbjct: 117 RHVLSPSGKVHASV--------------ASFNNHWGVPLTLARMPDDTDYGVFEVGMNHP 162

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +  +  I+      T +   H+   ++ +    AK  +FE L       ++  D+  
Sbjct: 163 GEIRPLVTMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGL-EAGGHVVLNRDNDQ 221

Query: 253 SKEVMKRAHNAGC-RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + + A + G   + S G   K    L +         + +++ G+  +     PG  
Sbjct: 222 FNFLDRTAQSLGVEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRH 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVD--YAHT 365
              NAL A G+   +G D    +  L  L        R      +  G    +D  Y   
Sbjct: 282 IAENALAALGVVRIVGADLEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNAN 341

Query: 366 SNSLEMILKNIRTITS---GRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             S+   +  +        GR I V       G   ++    + G +     +   +   
Sbjct: 342 PASMRAAIALLAAAEPTGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGA 401

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
           +          A +   +P  +    R    E     +  +   DVL+V
Sbjct: 402 D---------MAALKESLPESVHVEYREKTSELTDYVLNAVAPGDVLMV 441


>gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 458

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 178/483 (36%), Gaps = 49/483 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 6   LKQVEQMVNGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 65  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 118

Query: 128 SVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           S    V  +        +  G  +  IG   TI +  ++                     
Sbjct: 119 STKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +
Sbjct: 160 -VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--Q 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D           N     ++ G  +    +   V          ++   ++
Sbjct: 217 EGGVFVYNGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMN-RDEN 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I 
Sbjct: 276 ISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIIN 335

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIV 415
             Y  +  ++E     +  +      +V         D++      +GK+        + 
Sbjct: 336 DAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVF 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETV 472
           T          +I        P    K   N+ E ++    +++ +DV+++ A +G +  
Sbjct: 396 T----YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLE 451

Query: 473 HIV 475
            ++
Sbjct: 452 EVI 454


>gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 479

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 159/474 (33%), Gaps = 37/474 (7%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   P  +   + K+   V  DSR ++ G +F A+ G + DGH F  +
Sbjct: 1   MIALSLTEIAGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGERVDGHDFARK 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI  GA A++ +      D         P +VV +    +   A  +  +    ++A+TG
Sbjct: 61  AIEAGATAVLAARPVGTADAP------VPAIVVPDVIAAMGALARAVVERLDATVVALTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G  +            +     L   L        
Sbjct: 115 SAGKTSTKDLIAQLLQRRGPTVWTPGSLNNEIGL--PLTAMSADEATLHLVLE------- 165

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--K 240
               + A   G  ++         G   N+G  HI     ++    AK  L E L P  +
Sbjct: 166 ----MGARGKGHIRYLATLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPPAEE 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ ADD   + +M R       +                A   +   T+       
Sbjct: 222 GGVAVLNADDPLVRAMMSRTKARTV-LFGEAEDADVRAGNVRLADGGRPAFTLHTPTGCS 280

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L GE  V NAL AA +   +G+    +   L +   +      V   S G  +  
Sbjct: 281 EVTMRLYGEHHVSNALAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTVVN 340

Query: 361 D-YAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIA-----LDLA 410
           D Y     S+   L+ +  +       R   V G   +  +        +      L+++
Sbjct: 341 DAYNANPESMRAALRALVAMGAATPGRRTWAVLGQMAELGEESLAEHDAVGRLAVRLNVS 400

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  V        D               +   +   A+      L   DV++V
Sbjct: 401 KLVAVGGQEAAWLDMGAKNEG--SWGEESVHVSDVRAAVDLLRSELRPGDVVLV 452


>gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 466

 Score =  229 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 149/415 (35%), Gaps = 25/415 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   E++N   I      E  +   S+D+R      +F A+ G   D H ++  A+A
Sbjct: 4   LTTQQIAEILNAKLIGNG---ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV      +        + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCVAVVVERECECE-------IDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          +
Sbjct: 114 KTTVKEMTAKILQKMTACEQEV--LYTFGNLNNDLGVP-------MTLLRLTEQHKYAVI 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   +      AK  ++  L  +   AI
Sbjct: 165 ELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGL-KENGKAI 223

Query: 246 IYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +        + KE+  R   +   + S          + V    +  + T+     +   
Sbjct: 224 VNLAFYYPQWQKEIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAI 283

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G+  V NAL A  L +++G     V   LE+  +V GR   V  N     I   Y
Sbjct: 284 DLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHCLFIDDSY 343

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIV 415
               +S++  +  +    + RI  V       ++       +   A + A   IV
Sbjct: 344 NANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIV 398


>gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
 gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
          Length = 469

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 172/480 (35%), Gaps = 38/480 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+        +     + + VS+DSR +  G +FVA+ G + DGH FI  A+++G   
Sbjct: 6   LNEIAEATGGRVIGEAAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSKGVTI 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +   +++ +     +      ++V +T + L   A+    +     + VTG++GK++  
Sbjct: 66  FLAEESWAAKH---ELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTTK 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             + +I  ++G      G  + +                          +      +  S
Sbjct: 123 EMLARILAQTGPGLKTEGNLNNLIG-------------LPLTIFRLTGRERWAVFEIGMS 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G      +  +   G  TN    H++   + +    AK  LF  L P  S A+   DD
Sbjct: 170 EFGEIDRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKP-GSVAVYNVDD 228

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309
                V     +     L+ G +G  +    + ++    +  T+ +   +        G 
Sbjct: 229 PL---VSTCPTHLNVTRLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGR 285

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             +YNAL AA    A+G+   L+ + LE+      RF+       G  +  D Y     S
Sbjct: 286 HNIYNALAAAAAAHALGVPGDLIRQGLEEFSPYDKRFQLEEVA--GVTLIDDSYNANPAS 343

Query: 369 LEMILKNIRTITS-GRIIVVFGCGGDRDQGK---RPIMGKIALDLADIAIVTDDNPRSED 424
           +   L  ++ +   GR++ V G   +   G       +GK+A    D   +         
Sbjct: 344 MAAALTTLKELQGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGNVDRLYLLGK----LV 399

Query: 425 PEKIRAEIIHGIPGFIEKGNR--IEAIRTAIEMLNKQDVLVVAG----KGHETVHIVTNG 478
            E  +  +  G+P       R   +  +  +  +   D ++  G    K  +   +V  G
Sbjct: 400 EETAKGALEAGLPAADLVLGRDHDQLAQELLSFVQPGDCILFKGSRGMKMDKVAQLVRQG 459


>gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae DSM 12163]
          Length = 452

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 150/405 (37%), Gaps = 26/405 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I QL+   +   +  I +V++D+R   AG +F+A+ G + D H F+  AI  G   ++VS
Sbjct: 9   IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  +   +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  K---------RLPVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G  +                      L          + + A+  G 
Sbjct: 120 AILRECGETLYTAGNLNN-------------DIGVPLTLLRLKPQHRYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++       NL   H++   +      AK  +F  L P    AII  +     
Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINGESNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S G      +   V         T+     D D   PLPG   + N
Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFTLHSPQGDVDVTLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +++G   + V   L  L  VPGR   +  ++    +   Y     S+    +
Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +   R+++V      G +  +  R +   I     D  + T
Sbjct: 346 VLAGMPGYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLST 390


>gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
 gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
          Length = 460

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 88/486 (18%), Positives = 187/486 (38%), Gaps = 46/486 (9%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   +L   +  S+F        I  VS D+R IQ G +++ I G + +GH F+ +A
Sbjct: 1   MIKRTLKQLATMIPGSVFHSGNEAAVIEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A + +             ++  +++VD+T   L   A     +    ++ +TG+
Sbjct: 61  IENGAVATLWNKD------EENPPTDISVILVDDTLVALQQLAKSYRHELDIKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V+ +   +           T  +F     +           L    +  + 
Sbjct: 115 NGKTTAKDMVKAVLDTT------YRVLKTDGNFNNHIGMP-------LTILRLDETHDIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +  +      TN+G  H+    ++     AK+ +   L P    
Sbjct: 162 VLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPT-GQ 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            +   D+     +  R  N     ++ G  +   ++   + A       T+S E   + F
Sbjct: 221 LVYNGDEPL---LTSRVVNPVFETMTFGSSEQNDLYPSAISAEELGTTFTVSRE-TTYSF 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  V+NAL A  +    G+D+  + + L++L +   R E V        I   Y
Sbjct: 277 FIPVLGKHNVHNALSAIAVGHYFGLDNETIAKGLKELKLTNMRMELVKRTDGLTFINDAY 336

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  S++  +  +  +    + I+V G     GD+++     +G+         ++T  
Sbjct: 337 NASPTSVKAAITLMHDLEGYKQKILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYVLT-- 394

Query: 419 NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHET 471
                    +  EI  G          +    + E ++    +  ++DV++V A +G + 
Sbjct: 395 ------YGPLSVEIEQGAKNNFAEDKVMHFEEKDELVKKLTAITTREDVVLVKASRGMKL 448

Query: 472 VHIVTN 477
             +++ 
Sbjct: 449 EEVISK 454


>gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale DSM 17629]
          Length = 464

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 90/482 (18%), Positives = 175/482 (36%), Gaps = 60/482 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L + +  +      I      +  I     DSR ++ G++F+ I G + DGH FIP 
Sbjct: 6   MKNLTFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIPN 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              QGA  ++                  P ++V +T   +   A+         ++ +TG
Sbjct: 66  VFEQGAAIVLSEHELKDPAG--------PYVLVGSTTDAMKKLAAFYRKSLDIKVVGITG 117

Query: 123 TSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + GK+S    +  +        + +G  + +IG   TI                      
Sbjct: 118 SVGKTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIR------------------ 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S  V  + +  S  G                TN+G  H+++   +     AK   FE
Sbjct: 160 --ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFE 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI------HNKQ 289
            ++P ++ A++ ADD    ++       G   +  G +      K V          +  
Sbjct: 218 HMMP-DAVAVLNADDD---KLATVQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGM 273

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +        +FD    +PGE  VYNA+ AA + + +G+  A +   +EK   + GR  F+
Sbjct: 274 KAHFVTPEGEFDAQIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFI 333

Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T   G  +  D Y     S++  ++ + +   GR I V G  G+    ++ +  ++   
Sbjct: 334 KT--HGMTVIDDCYNANPVSMKSSIE-VLSHAKGRTIAVLGDMGELGSDEKKLHHEVGEA 390

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVL 462
           + +  I T          ++  E   G              +R    +  +  + + D +
Sbjct: 391 VGENHIHTLFAA-----GELAKEYAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTI 445

Query: 463 VV 464
           +V
Sbjct: 446 LV 447


>gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
 gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
          Length = 464

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 149/415 (35%), Gaps = 27/415 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   E++N   I      E  +   S+D+R      +F A+ G   D H ++  A+A
Sbjct: 4   LTTQQIAEILNAKLIGNG---ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCVAVVVERECEI---------DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          +
Sbjct: 112 KTTVKEMTAKILQKMTACEQEV--LYTFGNLNNDLGVP-------MTLLRLTEQHKYAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   +      AK  ++  L  +   AI
Sbjct: 163 ELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGL-KENGKAI 221

Query: 246 IYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +        + KE+  R   +   + S          + V    +  + T+     +   
Sbjct: 222 VNLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAI 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G+  V NAL A  L +++G     V   LE+  +V GR   V  N     I   Y
Sbjct: 282 DLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHCLFIDDTY 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIV 415
               +S++  +  +    + RI  V       ++       +   A + A   IV
Sbjct: 342 NANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIV 396


>gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Marinobacter aquaeolei VT8]
 gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Marinobacter aquaeolei VT8]
          Length = 465

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 101/473 (21%), Positives = 179/473 (37%), Gaps = 44/473 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + +    L   L+       E   + VS+D+R +  G +FVA+ G + DGH F+ QA+ Q
Sbjct: 7   LAEAREWLQATLAGARTDAGELWFDGVSTDTRSVGDGQLFVALRGERFDGHEFLGQALKQ 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A VV +  +            P LVV +T + L+  AS    +    ++A+TG+SGK
Sbjct: 67  GAVAAVVDTEIT--------DVAIPQLVVSDTVQALADLASGNRSESAARLVAITGSSGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V      I    G +    G          +       P+ L +            + 
Sbjct: 119 TTVREMTGAILAGMGPTLVTEG----------NLNNHIGVPLTLFRL---TPDHQFGAIE 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + AS  G   H +   +      TN G+ H++   + Q    AK  + +  +P +   ++
Sbjct: 166 LGASGLGEIAHTVSITRPQVAILTNAGQAHLEGFGSYQNIVLAKGEIIDG-VPADGAVVL 224

Query: 247 YADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLF 304
             DD    +   RA       V  +G+     H + + A     +   +  +      + 
Sbjct: 225 NRDDPAFDQWHARAGQRRVLGVSRMGHPAADYHAEAIMATDQGFEFLVLGPDSWRCHLVL 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPGE  + NAL+A   C  +G     V   L ++  V GR + +   S    I   Y  
Sbjct: 285 GLPGEHNITNALLALAACRELGATDQQVQSGLMQVEAVKGRLQVLKPASDLTLIDDSYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV------ 415
              S++  L  + +  + R+ V+      G + ++  R +         +  +V      
Sbjct: 345 NPASMKAALDVLASYPAPRLAVLGAMAELGDEAEELHRQVGEHARARGINKLMVVGAGGN 404

Query: 416 ---------TDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                    T+  P  E     I A+  +G    + KG+R  A+    E + K
Sbjct: 405 GYGTGFGDETEFFPSHEQAVNAIVAD-RNGAMTVLVKGSRSSAMDRVAEGIQK 456


>gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 464

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 149/415 (35%), Gaps = 27/415 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   E++N   I      E  +   S+D+R      +F A+ G   D H ++  A+A
Sbjct: 4   LTTQQIAEILNAKLIGNG---ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCVAVVVERECEI---------DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          +
Sbjct: 112 KTTVKEMTAKILQKMTACEQEV--LYTFGNLNNDLGVP-------MTLLRLTEQHKYAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   +      AK  ++  L  +   AI
Sbjct: 163 ELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGL-KENGKAI 221

Query: 246 IYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +        + KE+  R   +   + S          + V    +  + T+     +   
Sbjct: 222 VNLAFYYPQWQKEIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAI 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G+  V NAL A  L +++G     V   LE+  +V GR   V  N     I   Y
Sbjct: 282 DLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHCLFIDDSY 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIV 415
               +S++  +  +    + RI  V       ++       +   A + A   IV
Sbjct: 342 NANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIV 396


>gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale M104/1]
          Length = 464

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 90/482 (18%), Positives = 178/482 (36%), Gaps = 60/482 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L + +  +      I      +  I     DSR ++ G++F+ I G + DGH FIP 
Sbjct: 6   MKNLTFANIAKACEGTYIGDETQLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHRFIPT 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              QGA  ++     +            P ++V++T   +   A+         ++ +TG
Sbjct: 66  VFEQGAAIVLSEHELTDPAG--------PYVLVESTTDAMKKLAAFYRKSLDIKVVGITG 117

Query: 123 TSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + GK+S    +  +        + +G  + +IG   TI                      
Sbjct: 118 SVGKTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIR------------------ 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S  V  + +  S  G                TN+G  H+++ + +     AK   FE
Sbjct: 160 --ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLRDRDGVLKAKTECFE 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI------HNKQ 289
            ++P ++ A++ ADD    ++       G   +  G +      K V          +  
Sbjct: 218 HMMP-DAVAVLNADDD---KLATVQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGM 273

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +        +FD    +PGE  VYNA+ AA + + +G+  A +   +EK   + GR  F+
Sbjct: 274 KAHFVTPEGEFDAHIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFI 333

Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T   G  +  D Y     S++  ++ + +   GR I V G  G+    ++ +  ++   
Sbjct: 334 KT--HGMTVIDDCYNANPVSMKSSIE-VLSHAKGRTIAVLGDMGELGSDEKKLHHEVGEA 390

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVL 462
           + +  I T          ++  E   G              +R    +  +  + + D +
Sbjct: 391 VGENHIHTLFAA-----GELAKEYAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTI 445

Query: 463 VV 464
           +V
Sbjct: 446 LV 447


>gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 462

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/472 (19%), Positives = 171/472 (36%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q     +  + +  ++     W +  +  V+ DSR +QAG +F+ ++G   DGH +I
Sbjct: 1   MKMQ---VAEIAKAVQAVNA-EQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A + +S     D +  +  + P+++V +T   L         K    ++AV
Sbjct: 56  QSAIEHGAVATLWAS-----DHADDVPEDLPVIMVADTLTALQQLGQYYLQKINPKVVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +           G    ++    +       P+ L   LS   + 
Sbjct: 111 TGSNGKTTTKDMIASVL----------GTQFNVTKTHANFNNQIGVPVTL---LSMEPNT 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G        ++      T +G  HI++  T+    +AKM +   L  +
Sbjct: 158 EVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGL-KE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E   RA        + G                 Q    +    D 
Sbjct: 217 DGTFIFNGDEPLLQE---RAKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSLWPDN 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  P+ G + V NAL A  +     I  A   + +        R E++ T  RG  I  
Sbjct: 274 TYTIPMMGAYNVNNALAALLVADTFHIRPAAAQQAIASFVPTENRTEWL-TGYRGEAILS 332

Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           D Y     +   +L     +   G+ I V G   +       +   +A +L D A +   
Sbjct: 333 DVYNSNPTAARRVLAAFAAVPTKGQRIAVLGDMLELGDQSDALHMSLASEL-DPATIASV 391

Query: 419 NPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               E    +   +      G   + +   + + I      ++  D +++ G
Sbjct: 392 YLNGEHMRALAEVLQEKYPAGAVHYYQTDQQPQLIADLTATVSADDQVLLKG 443


>gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
 gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
          Length = 458

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 175/476 (36%), Gaps = 35/476 (7%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +++N   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  G
Sbjct: 6   LKQVEQMVNGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +           A    N P++ V++T   L + A     +    ++ VTG++GK+
Sbjct: 65  AVATLWMKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    V  +         +     T  +F                 L+   +  V  + +
Sbjct: 119 STKDIVTSLLAT------KFKVQKTEGNFNNHIG-------LPLTILNLEETTEVAVLEM 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  +E    +Y
Sbjct: 166 GMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVY 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D           N     ++ G  +    +   V          ++   ++  F  P+
Sbjct: 224 NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPV 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y  + 
Sbjct: 283 LGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASP 342

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++E     +  +      +V         D++      +GK+        + T      
Sbjct: 343 TAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT----YG 398

Query: 423 EDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
               +I        P    K   N+ E ++    +++ +DV+++ A +G +   ++
Sbjct: 399 RLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVI 454


>gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 453

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 149/387 (38%), Gaps = 30/387 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I++VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS    +     
Sbjct: 19  GESIDIDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHLPI----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P L+V +TR  L    + +  +    ++A+TG+SGK+SV      I +  G   
Sbjct: 74  ----NVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRHCGSVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +  D ++ 
Sbjct: 130 Y------TAGNFNNDIGVPL-------TLLRLTAEHQFAVIELGANHIGEIAYTTDLVRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F  L P +  AI+ AD         +     
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFSGL-PADGVAIVNADSNDFPHW--QVMLNH 233

Query: 265 CRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             V     Q           V  +    + T+     +   L PLPG   + NAL AA L
Sbjct: 234 KTVWRFSPQAACDIDFFASDVDVLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAASL 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G     V   L +L  VPGR   +  +     +   Y     S+    + +  +  
Sbjct: 294 AMSVGATLEAVKAGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLAEMPG 353

Query: 382 GRIIVVFGCGGDRD--QGKRPIMGKIA 406
            R++VV   G   D        +G+ A
Sbjct: 354 YRVMVVGDMGELGDEAPECHRQVGEAA 380


>gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 456

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 178/484 (36%), Gaps = 50/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   +++      P+ + +  I   ++D+R ++   +F+ + G   +GH F+PQA  +
Sbjct: 5   TVKRIADMVKGTLTNPV-FEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEK 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++   +               +++VD+T + L   A     +    ++ VTG++GK
Sbjct: 64  GVSAVLWDRS------EPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++    +  +        + +G  +  IG   T+                    L+    
Sbjct: 118 TTTKDMLHAVLGTQYRVHKTAGNFNNHIGLPLTV--------------------LAMPED 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  + +  S+ G         +  A   TN+G  H+    +++    AK+ +   L  
Sbjct: 158 TEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKLEIINGL-R 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++     + D+   +E         CR  + G +G    L+       ++    +++  D
Sbjct: 217 EDGVLFYFGDEPLLRE-----KAYTCRTTTYG-EGADNDLRLKEIKQGEEGTYFTIDSID 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ G   V NA+ A    I  GI        L +L V   R E V T +    + 
Sbjct: 271 RSFFIPVLGRHNVMNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVN 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIV 415
             Y  +  S++  ++ I T+   R  ++         D ++      G          + 
Sbjct: 331 DAYNASPTSMKAAIELIETMKGYRKKMLVLGDMLELGDEEKVFHEECGAAINPAEIDHVF 390

Query: 416 TDDNPRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVH 473
           T     +   +  R     G +  +++K   +EAIR   E     D+L+  A +G +   
Sbjct: 391 TYGTLGAFIADGARKHFEEGRVSHYLDKKELLEAIR---ENAASGDLLLFKASRGMKLEE 447

Query: 474 IVTN 477
            V +
Sbjct: 448 TVKD 451


>gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
 gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
          Length = 452

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 157/396 (39%), Gaps = 25/396 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +++   +   +  +N+V++D+R + AG +FVA+VG + D H F  +AI  GA+A++VS
Sbjct: 9   LAEITGGTLHGSDLTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEAIDSGAQALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  + P +VV++TR      ++ +  +    ++A+TG+SGK+SV     
Sbjct: 69  K---------HLPVSVPQVVVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G  +                      L   +      + + A+  G 
Sbjct: 120 AILRECGETLYTAGNLNNDYGVPMT-------------LLRLTAEHQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D +K  +    NL   H++   +      AK  +F+ L P    AI+  +     
Sbjct: 167 IAYTTDLVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFQGL-PANGIAILNEESNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S          + +    +     +     + + + PLPG   + N
Sbjct: 226 NWQTTLQDKTVWRFSPQAAACDFSARDIRIAQDGTHFVMKTPRGEAEIVLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +++    + V + L+ L  VPGR   V  ++    +   Y     S+   ++
Sbjct: 286 ALAAAALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSAHQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALD 408
            +  +   R++V        D  +     +G  A D
Sbjct: 346 VLSEMPGYRVLVAGDMAELGDETEKCHREIGDAARD 381


>gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
 gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
          Length = 460

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 88/486 (18%), Positives = 188/486 (38%), Gaps = 46/486 (9%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   +L   +  S+F        I  VS D+R IQ G +++ I G + +GH F+ +A
Sbjct: 1   MIKRTLTQLATMIPGSVFHSGNEATVIEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A + +             ++  +++VD+T + L   A     +    ++ +TG+
Sbjct: 61  IENGALATLWNKD------EENPPTDISVILVDDTLEALQQLAKSYRHELDIKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V+ +   +           T  +F     +           L    +  + 
Sbjct: 115 NGKTTAKDMVKAVLDTT------YRVLKTDGNFNNHIGMP-------LTILRLDETHDIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +  +      TN+G  H+    ++     AK+ +   L P    
Sbjct: 162 VLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPT-GQ 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            +   D+     +  R  N     ++ G  +   ++   + A       T+S E   + F
Sbjct: 221 LVYNGDEPL---LTSRVVNPVFETVTFGSSEQNDLYPSAISAEELGTTFTVSRE-TTYPF 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  V+NAL A  +    G+D+  + + L++L +   R E V        I   Y
Sbjct: 277 FIPVLGKHNVHNALSAIAVGHYFGLDNETIAKGLKELKLTNMRMELVKRTDGLTFINDAY 336

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  S++  +  +  +    + I+V G     GD+++     +G+         ++T  
Sbjct: 337 NASPTSVKAAITLMHDLEGYKQKILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYVLT-- 394

Query: 419 NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHET 471
                    +  EI  G          +    + E ++    +  ++DV++V A +G + 
Sbjct: 395 ------YGPLSVEIEQGAKNNFAEDKVMHFEEKDELVKKLTAITTREDVVLVKASRGMKL 448

Query: 472 VHIVTN 477
             +++ 
Sbjct: 449 EEVISK 454


>gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
 gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
          Length = 501

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 172/474 (36%), Gaps = 44/474 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  KD         +      +  I  +  DSR  QAG +F+ ++GNK DGH FI  
Sbjct: 47  MKNITVKDIVNATGGFLL--CGDEDTPITGLCIDSRKAQAGDLFIPLLGNKVDGHRFIEP 104

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ + A A + S   ++      + S  P + VD+T K L      + G++    + VTG
Sbjct: 105 AMER-ASATLTSEHDNV------VISEKPFIRVDDTMKALQAIGKDIRGRYDIPYIGVTG 157

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QG 181
           + GK++    +             +G                 S I +   LS ++    
Sbjct: 158 SVGKTTTREMIA----------AAVGT----GRHCFQTNGNENSQIGVPMTLSRMTDGYD 203

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  S  G  +   D ++      T +G  HI++ +TQ+   + K+ +    + + 
Sbjct: 204 AAVIEMGISEPGQMEILSDIVRPSICVVTMIGVAHIEFMKTQENIRDEKLSIVNH-MKEN 262

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF 300
              ++  DD   +E+     +  C+ L+ G           V       +   +  G+  
Sbjct: 263 GLLLLNGDDPLLREIKD---DMSCQTLTFGIDEVCDFQGSDVQCGEQGMEFDCTHNGETV 319

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             +  + G+  V NAL    +   +GI  A   +  E       R   +   +R   +  
Sbjct: 320 HVVMDVLGKHNVRNALAGIAVAYQLGIPMATAAKAFEHFEG--QRQRIIRMENRYTILDD 377

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIV 415
            Y  + +S++  +  +  +   G+   V       G D     R I   +     D  IV
Sbjct: 378 TYNASPDSMKASIDVLCDLDCKGKKYAVLADMNELGDDSVSYHRQIGEYLRDKKIDEVIV 437

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAG 466
                  E    I+  +      + +     +  E     + ++  +D++++ G
Sbjct: 438 -----VGEKALDIKKALDECDTKYAKTFSFMDNEEVALYLMAIMKPEDIVLLKG 486


>gi|254479547|ref|ZP_05092864.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034515|gb|EEB75272.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 260

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/258 (35%), Positives = 148/258 (57%), Gaps = 11/258 (4%)

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF 300
             ++I  DD YS  +++ +     +VL+ G +   ++  K++    +  +  + ++ K  
Sbjct: 5   KASVINIDDKYSSMMIESSKG---KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKE 61

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    +PG F VYNAL A  +   +GI    V E L  +  V GRFE V T  R   +++
Sbjct: 62  EISLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVT-VKGRFEPVET-GRDFYVFI 119

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + +  I++ ++   +GR I+VFG GGDRD+ KRP+MG++A   AD  I+T DNP
Sbjct: 120 DYAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNP 179

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           RSE+P++I A+I  GI      ++   +R EAIR A+    K DV+++AGKGHET  I+ 
Sbjct: 180 RSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQIIG 239

Query: 477 NGEKKMSVDCDIIREILG 494
           +       + +I++EIL 
Sbjct: 240 DKVIP-FDEREIVKEILA 256


>gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
 gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
          Length = 462

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 183/470 (38%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+
Sbjct: 4   IKLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+
Sbjct: 57  EMAIEKGAALCIVS---EINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F                      S 
Sbjct: 114 TGSTGKTSTKDLVAAVLSE------KYKVFKTEGNF-------NNEIGLPLMIFKLDKSY 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  +      +  +  K      TN+G  HI+   +++    AK+ +  +   K
Sbjct: 161 DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEI-TDFFCK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +S  II  DD    +++    +   +V  +G   KF        +  +  +  I  +GK 
Sbjct: 220 DSILIINGDD----DLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKT 275

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG+  V N+L A      + I+   +   ++ L     R + V    +G  
Sbjct: 276 AYRCFSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
           I  D Y  + +S++  +  ++ I   R I + G   +          +++    +  I  
Sbjct: 334 IINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYARERGIDL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 394 LFSIGEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
          Length = 458

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 173/468 (36%), Gaps = 36/468 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++   + N +     + R  ++  ++SDSR    G +FV IVG + DGH FIP 
Sbjct: 1   MKNLTLENIANVCNGIYRGDEKSRWTEVTAITSDSRQAAPGCLFVPIVGERVDGHSFIPN 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A +         F        P + V ++ + +   A     +    ++ +TG
Sbjct: 61  VMEAGALATLSQKELPEARF--------PYIQVASSLQAVKDIAKFYLEQLKIPVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  + +       +     T  +F  +       P+ + +   Y     +
Sbjct: 113 SVGKTSTKEVIASVLKE------KYHILKTQGNFNNEL----GLPLTVFRLRDY---HEI 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G      D  +      TN+G+ H+++   +     AK  +F   L +  
Sbjct: 160 AVLEMGISDFGEMSRLADIARPDTCVITNIGQCHLEFLGDRDGVLKAKTEVF-RYLKEGG 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDF 300
            AI+  DD     + +         +  G    F                  I +   +F
Sbjct: 219 RAILNGDDDKLATIRQVQGKEP---IFFGMNPAFPVYADQIQSRGLKGMSCRIHLPEAEF 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG+  VYNAL AA + +  G+    +   +E L  + GRF  + T+     I  
Sbjct: 276 AVEIPMPGQHMVYNALAAAAVGMVHGLTPEQIRRGIESLEPISGRFRMIETDH--FLIVD 333

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA-DIAIVT 416
           D Y     S++  L  ++     ++ ++   G   ++++     +G  A     D+ I T
Sbjct: 334 DCYNANPVSMKASLDVLKDALGRKVAILGDMGELGEQEKELHAEVGDHAGRCGLDLLICT 393

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               R        A   +     I + +  +  R     L   D ++V
Sbjct: 394 GSLSRYMSEAAKAA---NPNLEVIYEVDSKKLERNLFSYLRDGDTILV 438


>gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 462

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 183/470 (38%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+
Sbjct: 4   IKLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+
Sbjct: 57  EMAIEKGAALCIVS---EINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F                      S 
Sbjct: 114 TGSTGKTSTKDLVAAVLSE------KYKVFKTEGNF-------NNEIGLPLMIFKLDKSY 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  +      +  +  K      TN+G  HI+   +++    AK+ +  +   K
Sbjct: 161 DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEI-TDFFCK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +S  II  DD    +++    +   +V  +G   KF        +  +  +  I  +GK 
Sbjct: 220 DSILIINGDD----DLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKT 275

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG+  V N+L A      + I+   +   ++ L     R + V    +G  
Sbjct: 276 AYRCFSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
           I  D Y  + +S++  +  ++ I   R I + G   +          +++    +  I  
Sbjct: 334 IINDCYNASPDSMKAAIDVMKNIKGKRTITLLGSMMELGSEGYRAHREVSEYARERGIDL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 394 LFSIGEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
 gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
          Length = 455

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 153/418 (36%), Gaps = 36/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +    +        + ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLWKKGHE------GMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    S 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVPV-------TILEMKPST 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + ++      T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E   RA        + G++ +      +   +     T  V G   
Sbjct: 214 DGKFIYNGDEPLLEE---RAAKIKQEKSTFGFREEDTVFATIFRSYM-HHATFEVNGSTQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++      G  I  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQW-KKGDVGEAIMD 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           D Y     ++  +  +   +     GR I V G   +       +   +A  L    I
Sbjct: 329 DVYNSNPTAVRAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASLDPAII 386


>gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
 gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
          Length = 464

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 96/474 (20%), Positives = 172/474 (36%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         E+I       +   + R IN VS+DSR ++ G +F+A++G + DGH F
Sbjct: 1   MKLT------VSEVIEATGGQLIAGDKWRIINGVSTDSRTVKPGQLFIALIGERYDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A+  GA A+++S          T   + PI+ V++T + L   A+         ++A
Sbjct: 55  IDNAVTNGASAVMLSKD--------TADWDIPIIKVEDTLEALKRLAAYYRRMFYLTVVA 106

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+SGK++   F+  +  +        G  +             P              
Sbjct: 107 ITGSSGKTTTKEFIYAVLSQKYNVLKNRGNLNNQIGLPLTVFDINP-------------H 153

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  S+ G      D  +   G  TN+G  HI+    QQ    AK+ LF+    
Sbjct: 154 HQYAVLEMGMSALGEIHDLADIARPHIGVITNIGLSHIEKLGNQQNILRAKLELFD-FFG 212

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNK--QQVTISVE 296
               A++  DD     +        CRVL    +GK  I +  +    N       +  +
Sbjct: 213 DNDVAVLNGDDPLLCTLHSVLP---CRVLYFSTRGKGDIKVLNIRLYKNGYYCYTAVLPD 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+  D    + G   VYN+L A  + +   +    +   +E L+  P R           
Sbjct: 270 GQREDIYLNIAGFHNVYNSLAAVLVGMEANVPLKQIKAGIESLYDTPQRLRMFQIYPDIQ 329

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADI 412
            I   Y    +S+   ++ +  + S R I V G   +     +     +   +A    D+
Sbjct: 330 LIDDTYNANPDSMRAAIEVLCDLDSARKIAVLGDMLELGGIAETAHTELGRIVAQKRIDV 389

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +               + +           +  +AI    E +   D +++ G
Sbjct: 390 LVTVGRLAHFIADGAEASGMDAH--NIYRFNSNDDAISWLDEHITHGDAILIKG 441


>gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
 gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
          Length = 462

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 97/463 (20%), Positives = 179/463 (38%), Gaps = 46/463 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             +I  VS+DSR I  G +FV + G   DGH FI +A  +GA AI+       +  +  I
Sbjct: 23  NIQITGVSTDSRTINKGELFVPLTGPNFDGHDFIERAFEKGAAAILCDKNKRSKVDNLPI 82

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQR 139
           ++   I+ VDN +  L   ++          +A+TG+ GK++             ++ + 
Sbjct: 83  KN---IIFVDNPQSALLSLSAYYRRLFDIPFVAITGSVGKTTTKEMTAEILNMRFKVLKT 139

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           SG  + +IG   TI                            V  V +  S+ G      
Sbjct: 140 SGNLNNEIGLPLTI--------------------FRLEEGYQVGVVELGMSALGEISRMA 179

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++      TN+G  HI+   ++Q    AKM + E L  +   A++  D    +E+   
Sbjct: 180 SVVRPKIAVITNIGIAHIEKLGSKQNIARAKMEILEPL-GENDLAVLNGD---CQELWDA 235

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                 + +  G +   I  + + +    + +  I     +  F   LPG   V NAL A
Sbjct: 236 RKTIVPKTVFFGQERGDIKARNIKSNSTNELEFDIYGCYGEMTFKALLPGIHNVNNALAA 295

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             +   +G+    + +    L +   R +F   +  G  I  D Y    +S++  L  ++
Sbjct: 296 IAVGFEMGLTKEEIQQGFLNLKLPEMRLQF-KKSYFGADIIDDAYNANPDSMKSALDFLQ 354

Query: 378 TITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             + G+   V         D  +     +GK A + ADI I   +  +S     ++  + 
Sbjct: 355 QYSYGKKRAVILGDMLELGDLSEKAHFEIGKYAAERADIFIAVGNYAQSFKKGALQGHLD 414

Query: 434 H-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHI 474
              I  F+      EA+    +++   D++++ A +G +   I
Sbjct: 415 SRYIHTFLTV---KEAVGEIKKLVEDCDIILIKASRGMKMEQI 454


>gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 452

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 171/461 (37%), Gaps = 39/461 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ + KI  V+ DSR +Q   +F+   G   DGH F+ Q+I  GA A    +   +    
Sbjct: 20  QFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQSIQDGAAAAFYQTGQEID--- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
            +     P++ V +T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 77  -SSLEEQPLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLKTQFKV 135

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 136 KKTQGNYNNEIGMPLTI--------------------LELDYDTDISILEMGMSGFHEIE 175

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    ++     AK  +   L       I   D+   +  
Sbjct: 176 LLSSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGL-KDNGIFIYDGDEPLLQPH 234

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +      +++SVG +    ++  + +  N   +  ++   +  +  P+ G   + NA 
Sbjct: 235 VAQVK--HAKLISVGLEQHNTYVCTIDSNQND-GIAFNINNTE-HYELPILGVHNMRNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+   ++  +++ + +   R E   T  +   I   Y  +  S++  +  +
Sbjct: 291 IAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASIDTL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             +  GR I++     +     + +  +I   L +  I  +     E+ + I       +
Sbjct: 351 SNM-EGRKILILADCLELGDNSQHMHEEIGEYLKNKNID-ELYTFGEEAQYIHRSGQPYV 408

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                  ++   I    + L   D ++V G +G++   IV 
Sbjct: 409 SHAQHFESKEAIIEQLKKELVAGDKVLVKGSRGNKLEDIVN 449


>gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
 gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
          Length = 462

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 182/470 (38%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+
Sbjct: 4   IKLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+
Sbjct: 57  EMAIEKGAALCIVS---EINFSEGKVSKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F                      S 
Sbjct: 114 TGSTGKTSTKDLVAAVLSE------KYKVFKTEGNF-------NNEIGLPLMIFKLDKSY 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  +      +  +  K      TN+G  HI+   +++    AK+ +  +   K
Sbjct: 161 DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEI-TDFFCK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +S  II  DD    +++    +   +V  +G   KF        +  +  +  I   GK 
Sbjct: 220 DSILIINGDD----DLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILERGKT 275

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG+  V N+L A      + I+   +   ++ L     R + V    +G  
Sbjct: 276 AYRCFSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
           I  D Y  + +S++  +  ++ I   R I + G   +          +++    +  I  
Sbjct: 334 IINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMRELGSEGYRAHREVSEYAREKGIDL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 394 LFSIGEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 455

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 152/418 (36%), Gaps = 36/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +    +        + ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLWKKGHE------GMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    S 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVPV-------TILEMKPST 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + ++      T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E   RA        + G++ +          +     T  V G   
Sbjct: 214 DGKFIYNGDEPLLEE---RAAKIKQEKSTFGFREEDTVFATTFRSYM-HHATFEVNGSTQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++      G  I  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQW-KKGDVGEAIMD 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           D Y     ++  +  +   +     GR I V G   +       +   +A  L    I
Sbjct: 329 DVYNSNPTAVRAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASLDPAII 386


>gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 455

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 153/418 (36%), Gaps = 36/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +    +        + ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLWKKGHE------GMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    S 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVPV-------TILEMKPST 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + ++      T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDHPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E   RA        + G++ +          +     T  V G   
Sbjct: 214 DGKFIYNGDEPLLEE---RAAKIKQEKSTFGFREEDTVFATTFRSYM-HHATFEVNGSTQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++      G  I  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQW-KKGDVGEAIMD 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           D Y     +++ +  +   +     GR I V G   +       +   +A  L    I
Sbjct: 329 DVYNSNPTAVKAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLATSLDPAII 386


>gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
          Length = 455

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 149/418 (35%), Gaps = 36/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L        +  I+ V+ DSR +    +FV + G + DGH FI
Sbjct: 1   MKMQ------LAEIAKALDTTIEGNSDPVISSVAFDSRKLNENSLFVPLKGER-DGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A +    +  +        N P++ VD+T   +   A     K    ++ +
Sbjct: 54  NSAIANGAVATLWEKGHPNK------PGNFPLIEVDDTLAAMQELAKYYLNKVNPAVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------MTILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H    +K      T +G  HI++  ++    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSSLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     + +RA        + G+  +   +  +         +      + 
Sbjct: 214 DGEFIYNGDEPL---LRQRAEKITQVKSTFGFSDQDT-IHALEFKSYMHHASFVTNSSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R ++      G  I  
Sbjct: 270 KFSIPMIGKHNVSNAMAAICVGHHFGESDDEIAASLSDFTPTANRMQWRK-GDVGEDIMD 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           D Y     + + +L +   +     GR I V G   +       +   +A  L  + I
Sbjct: 329 DIYNSNPTAAKAVLTSFGQVEVPEGGRRIAVLGDMLELGAASAELHASLADKLDPLVI 386


>gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
 gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
          Length = 450

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 176/470 (37%), Gaps = 42/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +++     +LI   S        ++I   S DSR +  G +++ I+G + DGH FI
Sbjct: 1   MRVSEIVEATGGKLICGNS-------NQEITGFSQDSRKVSPGMMYIPIIGERFDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A++        +          I+ V +T K L   A  L       ++ +
Sbjct: 54  KNAFENGASAVISGRDIDDSEHI--------IIKVKDTLKALQDMAHYLRKHRKVKVVGI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    V  + ++      Q     T  ++         + I L   +  L  +
Sbjct: 106 TGSVGKTSTRDMVYSVIKQ------QYKTLKTEGNY--------NNAIGLPLTILRLKDE 151

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  +     +           + TN+G  HI    +++    AKM +    +  
Sbjct: 152 QVMVLEMGMNHLKEMEELSMIACPDISAITNVGTAHIGELGSRENILKAKMEIING-MSD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
            S  +I  D+    +++         ++ VG   G       V             +GK 
Sbjct: 211 NSMLVINNDN----DMLSTVEVGRLNLIRVGIDNGVDFKANNVVLSDEGSTFNFEYKGKV 266

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    P+PG+  V NAL+A  + + + I     ++ +++  +   R + V   +    I 
Sbjct: 267 YFVDVPVPGKHFVMNALIAIAIGLQLDISPEQCIKGVKEFELTRNRMDIVELKNNITLID 326

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             Y  + +S++  +  + T T  +I V   +   G   +Q  R I   +A +  DI +  
Sbjct: 327 GTYNASEDSMKSSIDVLATYTRRKIAVLADMLELGKYSEQLHRNIGMYVAKNKIDILVAV 386

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 E    I A    G+       +  E I    +++   DV++  G
Sbjct: 387 GK----ESKYIIDAASKAGVKQICYCNSNEEVINYLGKIIQSNDVILFKG 432


>gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
 gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
          Length = 455

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 167/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +    +  +       ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLWKKGHEGK------PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             PS   L          
Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVHKTQANFNNEIGVPVTILEMKPSTEIL---------- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G   H  + ++      T +G  HI++  T+    +AKM +  + L +
Sbjct: 158 ---VLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E   RA        + G++ +          +     T  V   + 
Sbjct: 214 DGKFIYNGDEPLLEE---RAAKIKQDKSTFGFREEDTVFATTFRSYM-HHATFEVNDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++      G  I  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENYEQIAQALANFTPTANRMQW-KKGDVGEAIMD 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           D Y     +++ +  +   +     GR I V G   +       +   +A  L D AI+ 
Sbjct: 329 DVYNSNPTAVKAVTTSFGQVMVKDGGRRIAVLGDMLELGDESAELHASLANAL-DPAIIN 387

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +      + + +   ++   P     +  +      I      +   D++++ G
Sbjct: 388 ELYLYGPEMKNLYDALVDKYPAANLHYYPQDEMNHMIDDLKNDIKPDDIVMLKG 441


>gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 457

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/492 (19%), Positives = 177/492 (35%), Gaps = 57/492 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ L  K+  + +N + I        + + V++DSR ++ G  F+ +VG K DGH +I  
Sbjct: 1   METLKCKEIVKAVNGVLI--SGDLNTEFSNVTTDSRQVRKGDFFIPLVGEKFDGHDYIIT 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           +  QG    +     +             ++ V++T   L + +S    K     + +TG
Sbjct: 59  SFEQGVSGCLTQKDTAG-------YEGKVVIKVEDTLSALRMLSSYYRKKFDIPFVGITG 111

Query: 123 TSGKSSVASFVQQ-------ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + GK+S    V         + +  G  + +IG   T+                     +
Sbjct: 112 SVGKTSTKDMVSSVLNKKFNVLKTQGNFNNEIGVPLTV--------------------FN 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S+     V +  S  G        +K      TN+G  HI+   ++Q    AKM +FE
Sbjct: 152 LESTHEAAVVEMGMSGFGEISRLTSIVKPDIAIITNIGLSHIEKLGSRQNILKAKMEIFE 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTI 293
            L   +   I+  DD     +         R +  G +    +                I
Sbjct: 212 GL-KSQGLVILNGDDNLLFGLKNLL---NYRTVFYGMEDGLDYQAYNISSQGEQGTSFEI 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++  +++    P+PG   ++NAL A    I + I    ++E + +      R      + 
Sbjct: 268 TIGNENYKVHVPVPGIHNIHNALAAIAAGIELNIPVKDIIEGIGEFSPGKMRLNI--MDH 325

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQ---GKRPIMGKIALD 408
            G +I  D Y  +  S+E  +  ++ I    R I V G   +           +GK A  
Sbjct: 326 NGIKIINDAYNASPQSMEAAINVLKDIAGDNRTIAVLGDMLELGDIAVKAHMGVGKFAFS 385

Query: 409 LADIAIVTDDNPRSEDPEKIRA-EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                IV       E+ + I    +  G          +  EA +  ++     DVLVV 
Sbjct: 386 KEVSYIV----AVGENGKNIAEGALKAGAEEARVFHFKDNSEAGKFLLDFTKPGDVLVVK 441

Query: 466 G-KGHETVHIVT 476
           G +G +   IV 
Sbjct: 442 GSRGMKMEEIVN 453


>gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
 gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
          Length = 454

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/470 (17%), Positives = 178/470 (37%), Gaps = 47/470 (10%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           ++    + E +I  V++D+R +  G +F+ ++G   +GH F  +A+  GA A++ +    
Sbjct: 16  TLSNQAFGEEQIYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQK-- 73

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A      P+++VD+T   L   A     +    ++ +TG++GK++    +  + Q
Sbjct: 74  ----EANPPFGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQ 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +           T  +F                 L+      +  + +  S+ G  +  
Sbjct: 130 TT------YQVHKTDGNFNNHIG-------LPLTILAMPEGTEIAVLEMGMSAKGEIEFL 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +  +      TN+G  H+    +++A  +AK  + + L  K+       D+     +  
Sbjct: 177 SNLAEPETAVITNIGESHMQDLGSREAIADAKCEITKGL-KKDGTFYYLGDEPL---IRD 232

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           RA     +V + G + +   +K        +     VEG    FL P+ G+  V NAL A
Sbjct: 233 RATALSQQVKTFG-EAEDCDIKVTHINQLAEGTEFQVEGYAQGFLIPVLGKHNVKNALAA 291

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             +    G++   + + L +  +   R E   T  +G  +  D Y  +  S++  +  + 
Sbjct: 292 IAIGQHFGLNERQIAQGLMQTKLTGMRLELFKTE-KGITVINDAYNASPTSMKAAIDLVG 350

Query: 378 TITS--GRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +     RI+V   +   G + +     +   I  +  D  +            ++ A I
Sbjct: 351 DMDGFANRILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVM---------TYGRLGAFI 401

Query: 433 IHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
             G              ++ E  +   ++    DV++V A +G     ++
Sbjct: 402 AEGAKKSFGDARVFSFMDKEELKKKLADVAGPDDVVLVKASRGMRLEEVI 451


>gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
 gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
          Length = 465

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 168/415 (40%), Gaps = 30/415 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  +  +     P    ++++  V+ DSR ++  ++F+AI G + + H FIP 
Sbjct: 11  MKNLTLRNITKACHGEYRGPENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFIPD 70

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            I +GA  ++        DF        P ++V++T + L   A          ++ +TG
Sbjct: 71  TIKKGAMCVISHEDLGETDF--------PYILVESTGQALLDTAKLYRDSFDIKVVGITG 122

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T+ +F         +   L   +  ++ +  
Sbjct: 123 SVGKTSTKEMIASVLSQ------KYCVHKTLGNF--------NNEWGLPITIFEMNEKHQ 168

Query: 183 THVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     +H  +  RL  +        TN+G  H+++ +T++     K ++ ++ +   
Sbjct: 169 VAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQD-MKTG 227

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDF 300
              ++  DD   ++ M            +G   +F               TI +  G+ F
Sbjct: 228 GSILLNGDDDLLRD-MGPVKGVDPEFFGLGKNCQFYATDVESLGLRGSSCTIHLPSGESF 286

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D + PLPG   V NAL    +   +G+  A +   +E L  +PGR   + T+     I +
Sbjct: 287 DCIVPLPGAHMVQNALAGTAVGYQLGLTPAEIKAGIEGLPSIPGRNNIIQTDK---IIIL 343

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           D  + +N + M    ++  +  GR + V G  G+  +  + +  +      DI I
Sbjct: 344 DDCYNANPISMQASLDVLNMAIGRKVAVLGDMGELGETGKELHYETGAHAGDIGI 398


>gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 453

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 150/387 (38%), Gaps = 30/387 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I +VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS    +     
Sbjct: 19  GESIDIEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHLPI----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P L+V +TR  L    + +  +    ++A+TG+SGK+SV      I ++ G   
Sbjct: 74  ----DVPQLLVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +  D ++ 
Sbjct: 130 Y------TAGNFNNDIGVPL-------TLLRLTAEHQFAVIELGANHIGEIAYTTDLVRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F  L P +  AI+ AD         +     
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGL-PADGVAIVNADSNDFPHW--QVTLNH 233

Query: 265 CRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             V     Q           V  +    + T+     +   L PLPG+  + NAL AA L
Sbjct: 234 KTVWRFSPQAACDIDFFASDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAASL 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G     V   L +L  VPGR   +  +     +   Y     S+    + +  +  
Sbjct: 294 AMSVGATLEAVKAGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLAEMPG 353

Query: 382 GRIIVVFGCGGDRD--QGKRPIMGKIA 406
            R++VV   G   D        +G+ A
Sbjct: 354 YRVMVVGDMGELGDDAPECHRQVGEAA 380


>gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 455

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 167/470 (35%), Gaps = 32/470 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +  + + +F  ++  + +   +     I  V+ D R +Q G  FVA VG + DGH F+ +
Sbjct: 1   MTPMPFANFVHVVGGIPVI-HEAPNVTITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  +GA   VV+                P + V N  + +   A     +    ++ +TG
Sbjct: 60  AFRRGASVAVVTEDVKTALG--------PCIRVQNALQAVQALARWERDQFEGPVVGITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    V  +    G   +              +             L   +S   
Sbjct: 112 SNGKTTTKEMVAAVLSAIGPCVYT-------------SANQNNELGLPLTILQRDASHRA 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +     G  +      +   G  T++G +HI+   +Q+    AK  L   L PK+ 
Sbjct: 159 MVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQENIALAKTELIASL-PKDG 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            A++  DD + + +    H    R+L  G  +G  I    V          +        
Sbjct: 218 MAVLNGDDPWLRRMQ---HRTTARILWYGMSEGCDIRATSVAWSQEGMSFEVDTPHGTAT 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+  V NAL A  +   +G+    + + L ++    GR   V  ++    +  D
Sbjct: 275 MRIRLLGQHNVMNALAAIAVGQTLGLSLEDIEKGLGRVEAQRGRLRLV--DAGDVTVIDD 332

Query: 362 -YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y  + +S+   L+ +  I   G  + V G   +  +        +   +A   +     
Sbjct: 333 AYNASPSSVAASLEVLERIARPGHRVAVLGDMLELGEMAVQAHRDVGRRVASAGVDRLLC 392

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                 E  RA    G+P         E + +    L   DV++V A +G
Sbjct: 393 VGELAAEMARAAEEAGVPEVRHFNGLEELLASVRSYLQPGDVVLVKASRG 442


>gi|213585692|ref|ZP_03367518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 338

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 107/341 (31%), Positives = 161/341 (47%), Gaps = 10/341 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  EN  ++AVTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           TNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A      
Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++  + V        +  +    + +    L G F V N L+A    +A+
Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           G     +L+   +L  V GR E V T      + VDYAHT 
Sbjct: 299 GYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTP 338


>gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
 gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
          Length = 452

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 171/461 (37%), Gaps = 39/461 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ + KI  V+ DSR +Q   +F+   G   DGH F+ Q+I  GA A    +   +    
Sbjct: 20  QFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQSIQDGAAAAFYQTGQEID--- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
            +     P++ V +T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 77  -SSLEEQPLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLKTQFKV 135

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 136 KKTQGNYNNEIGMPLTI--------------------LELDYDTDISILEMGMSGFHEIE 175

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    ++     AK  +   L       I   D+   +  
Sbjct: 176 LLSSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGL-KDNGIFIYDGDEPLLQPH 234

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +      +++SVG +    ++  + +  N   +  ++   +  +  P+ G   + NA 
Sbjct: 235 VAQVK--HAKLISVGLEQNNTYVCTIDSNQND-GIAFNINNTE-HYELPILGVHNMRNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+   ++  +++ + +   R E   T  +   I   Y  +  S++  +  +
Sbjct: 291 IAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASIDTL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             +  GR I++     +     + +  +I   L +  I  +     E+ + I       +
Sbjct: 351 SNM-EGRKILILADCLELGDNSQHMHEEIGEYLKNKNID-ELYTFGEEAQYIHRSGQPYV 408

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                  ++   I    + L   D ++V G +G++   IV 
Sbjct: 409 SHAQHFESKEAIIEQLKKELVAGDKVLVKGSRGNKLEDIVN 449


>gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
 gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
          Length = 453

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/411 (20%), Positives = 156/411 (37%), Gaps = 40/411 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+ Q         +  I  V +DSR ++   +FVA+ G + DGH + 
Sbjct: 2   MYLSEIAKATGGTLVGQ---------DVLIQSVGTDSRKLEPAQLFVALKGERFDGHDYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +++GA A+++S               TP ++V++TR  L   A+    K    + A+
Sbjct: 53  RAVLSEGATAVLLSHDVGA----------TPAVLVEDTRLALGQLAAYWRSKFSIPVAAI 102

Query: 121 TGTSGKSSVASFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG++GK+SV   +  I +  +G     +     +++            I L   L  L  
Sbjct: 103 TGSNGKTSVKEMLAAILRVAAGADDAVLATQGNLNN-----------DIGLPLTLLRLHE 151

Query: 180 QGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +    V     +H  +   L  I +       N    H+    + +    AK  +FE L 
Sbjct: 152 RHRYAVVEMGMNHAGEISYLTRIGRPDVALINNATAAHLGGLGSVEGVAKAKGEIFEGL- 210

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I ADD+++      A     R++  G     +             + +S    
Sbjct: 211 ADDGVAVINADDSFAGLWQSLAGRR--RIVRFGLNAGDVTA-GYALHSAGCDLQLSTPAG 267

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+PG   + NAL A  + +++G+    V E L     V GR +       G  +
Sbjct: 268 ERALHLPVPGLHNIRNALAATAVALSMGVSLDAVAEGLAGFAGVKGRLQRKP-GRHGALL 326

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIA 406
             D Y     S+   +  + + +  R++VV   G   +        +G  A
Sbjct: 327 IDDTYNANPASMRAAIDVLASHSGKRLLVVGDMGELGENEAALHAELGAYA 377


>gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 458

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/389 (22%), Positives = 157/389 (40%), Gaps = 30/389 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +I++V +D+R +  G +F+A+ G K D H F   A+A+GA A++VS    +     
Sbjct: 19  GADTQISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADAVAKGAGALLVSKRLPI----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +VV +T   L L  + +  + P  I+A+TG+SGK+SV     +I ++ G   
Sbjct: 74  ----DAPQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKTSVKEMSAEILRQCGNVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L          V + A+  G   + ++ +K 
Sbjct: 130 Y------TAGNFNNDIGVPL-------TLLRLEPEHEFAVVELGANHVGEIAYTVNLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F+ L      AII AD        ++     
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAKAKGEIFDGLT-SNGTAIINADSNDWPHWQEKI--TH 233

Query: 265 CRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            RV     Q           V   H   +  +         + PLPG   V NAL A  L
Sbjct: 234 QRVWRFSPQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALAATAL 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G     V + L +L  VPGR   +  N++   +   Y     S+    + + ++  
Sbjct: 294 TMSVGATLENVRQGLSELKAVPGRLFPIRLNAQQLILDDTYNANVGSMTAAAQVLGSMPG 353

Query: 382 GRIIVVFGCGG--DRDQGKRPIMGKIALD 408
            R++VV   G     ++     +G  A +
Sbjct: 354 YRVMVVGDMGELGTEEEDCHRQVGIAARE 382


>gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
          Length = 457

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 175/463 (37%), Gaps = 39/463 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGAVAVV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           +    S          + P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  IQQENSSI--------SIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +  SS  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAASSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDVWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSSQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  + RI+ V       +      R +   +     D+           +   + 
Sbjct: 346 IDVLKSYDAFRILCVADMKELGENSLAIHREVGQYVKSSNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKG 468
           ++ + G   F +K + ++     I T ++   K   +VV GKG
Sbjct: 400 SDAVLG-KHFTDKVDMVDFLVPLIETQLQQNKK---VVVLGKG 438


>gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 472

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 154/437 (35%), Gaps = 26/437 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR +  G IFVA+ G   DGH +I +  A+GA   +V  A+   + +         
Sbjct: 33  VVIDSRAVVDGAIFVALQGEHTDGHQYIDEVFAKGAHWAMVKKAWYESEGAPAAPEGCGF 92

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV++    L   A+         ++AV G++GK++    V  +           G   T
Sbjct: 93  LVVEDPVAGLQRLAAIYRQTFSIPVIAVGGSNGKTTTKEMVAAVL----------GTGFT 142

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + +   +       P+ L   L      G+  V +  +  G  +  L+  +   G  TN+
Sbjct: 143 VQTSKGNLNNHLGVPLTL---LQLRRQTGIAVVEMGINHPGEMELLLELARPTHGLLTNI 199

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G +H+++    +     + RLF  L        + ADD + KE  +    +     +   
Sbjct: 200 GHEHLEFLLNLEGVAAEETRLFRYLQQHGGTCFVNADDLWLKEAAEGLTGSFTYGTADDS 259

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           Q              +        G          G+  V NAL AA +    G+    +
Sbjct: 260 QIACQARHIAVDRSGRVSFEFVSGGLSERIALHFIGKHNVINALAAAAVGTYFGLSLEQI 319

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGC 390
            + LE L   PG       ++ G  +  D Y   S+S+ + +  +  I  SG+ I V G 
Sbjct: 320 KKGLEALRPSPGWKRLEVQDAGGVVLINDTYNANSDSMRLAIDALVDIPCSGKKIAVLGD 379

Query: 391 GGDRDQGKRPIMGK----IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
             +  +       K    I     D+      + R          I  G        NR 
Sbjct: 380 MLELGEAGIVEHEKTGRYIQQSPIDLLFTYGRHAR-------LYGIEAGARCHGHYENRQ 432

Query: 447 EAIRTAIEMLNKQDVLV 463
           + +     ++   D ++
Sbjct: 433 KLLDELKMVVQPGDAVL 449


>gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 455

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 167/470 (35%), Gaps = 32/470 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +  + + +F  ++    +   +  +  +  V+ D R +Q G  FVA VG + DGH F+ +
Sbjct: 1   MTPMSFANFVRVVGGTPVL-HEAPDVTVTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  +GA   VV+                P + V N  + +   A    G+    ++ +TG
Sbjct: 60  AFRRGASVAVVTEDVKTALG--------PCIRVQNALQAVQALARWERGQFEGPVVGITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    V  +    G   +              +             L   +S   
Sbjct: 112 SNGKTTTKEMVAAVLGALGPCVYT-------------SANQNNELGLPLTILQRDASHRA 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +     G  +      +   G  T++G +HI+   +Q+    AK  L   L P + 
Sbjct: 159 MVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQENIALAKTELIASL-PNDG 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            A++  DD + + +    H    R+L  G  +G  I    V          +        
Sbjct: 218 IAVLNGDDPWLRRMQ---HRTSARILWYGMGEGCDIRATSVTWSQEGMSFEVDTPHGTAT 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+  V NAL A  +   +GI    +   L ++    GR   V  ++    +  D
Sbjct: 275 LRIRLLGQHNVMNALAAIAVGQTLGISLGDIQIGLGRVEAQRGRLRLV--DAGDVTVIDD 332

Query: 362 -YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y  + +S+   L+ +  I   G  + V G   +  +       ++   +A   +     
Sbjct: 333 AYNASPSSVGASLEVLERIARPGHRVAVLGDMLELGEMAVQAHREVGRRVASAGVDRLLC 392

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                 E  RA    G+P         E + +    L   DV++V A +G
Sbjct: 393 VGVLAVEMARAAEEAGVPVVRHFNALEELLASVGSYLQPGDVVLVKASRG 442


>gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 468

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/472 (19%), Positives = 171/472 (36%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q     +  + +  ++     W +  +  V+ DSR +QAG +F+ ++G   DGH +I
Sbjct: 7   MKMQ---VAEIAKAVQAVNA-EQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYI 61

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A + +S     D +  +  + P+++V +T   L         K    ++AV
Sbjct: 62  QSAIEHGAVATLWAS-----DHADDVPEDLPVIMVADTLTALQQLGQYYLQKINPKVVAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +                ++    +       P+ L   LS   + 
Sbjct: 117 TGSNGKTTTKDMIASVLS----------TQFNVTKTHANFNNQIGVPVTL---LSMEPNT 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G        ++      T +G  HI++  T+    +AKM +   L  +
Sbjct: 164 EVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGL-KE 222

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E   RA        + G                 Q    +    D 
Sbjct: 223 DGTFIFNGDEPLLQE---RAKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSLWPDN 279

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  P+ G + V NAL A  +     I  A   + +        R E++ T  RG  I  
Sbjct: 280 TYTIPMMGAYNVNNALAALLVADTFHIRPAAAQQAIASFVPTENRTEWL-TGYRGEAILS 338

Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           D Y     +   +L     +   G+ I V G   +  +    +   +A +L D A +   
Sbjct: 339 DVYNSNPTAARRVLAAFAAVPTKGQRIAVLGDMLELGEQSDALHMSLASEL-DPATIASV 397

Query: 419 NPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               E    +   +      G   + +   + + I      ++  D +++ G
Sbjct: 398 YLNGEHMRALAEVLQEKYPAGAVHYYQTDQQPQLIADLTATVSADDQVLLKG 449


>gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 462

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/470 (19%), Positives = 180/470 (38%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL ++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+
Sbjct: 4   IKLAEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA   +VS    +      I  ++ ++ V+NT K L   A     K    ++A+
Sbjct: 57  EMAIEKGAALCIVS---EINFSEGKIGESSYVIKVENTNKALLDLAKYYRSKLDIKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F                      S 
Sbjct: 114 TGSTGKTSTKDLVGAVLSE------KYKVFKTEGNF-------NNEIGLPLMIFKLDKSY 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  +      +  +  K      TN+G  HI+   +++    AK+    +   K
Sbjct: 161 DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLE-VTDFFCK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +S  II  DD +    +    +   +V  +G   KF        +  +  +  I  +GK 
Sbjct: 220 DSILIINGDDDF----LSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKT 275

Query: 300 FD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG+  V N+L A     A+ I+   +   ++ L     R + V    +G  
Sbjct: 276 AYKGFSVNVPGKHNVLNSLTAIACGRALDINYKDIQTGIKNLKATSMRLDIV--KEKGFT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
           I  D Y  + +S++  +  ++ I   R I + G   +          +++    +  I  
Sbjct: 334 IINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMRELGNEGYRAHREVSEYAREKGIDL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       E   +   EI      +    N  EA +    ++   D++++
Sbjct: 394 LFSIGEFGEAYREGFGEINK--ENYKSFLNNKEAAKYIKNIIKDGDIILI 441


>gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
 gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
          Length = 461

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 94/481 (19%), Positives = 193/481 (40%), Gaps = 36/481 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + +L+  +      Q  +     +++ I  +S+DSR ++   +F+ + G K DG  F+  
Sbjct: 1   MMELLIAEIVR-ATQGKLIKGSLKDKII-GISTDSRKVKKDELFIPLKGEKYDGEDFVKD 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA+A++ +   +++       +   I+ V++T + L   A     K     +AVTG
Sbjct: 59  AMTKGAKAVLTARLDNIEYLKDFPFN---IIYVNDTLEALHKIAYYYRKKFNIPFVAVTG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    + QI  +      +     T  +F                  +  ++  +
Sbjct: 116 STGKTTTKDMIAQILSK------KYKVLKTEGNF-------NNEIGLPLTIFNLENTHQI 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +  S  G  +   + +K     FTN+G  HI+   +++    AK  L E+   +E+
Sbjct: 163 AVVEMGMSGFGEIRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDF-KEEN 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++ ADD     ++K       +    G +   I    +       + T+  +  + + 
Sbjct: 222 VIVLNADDDM---LLKILQQYSSKYYRYGIKSGEIKACDIEKGEKGIEYTLKYKNLEKEI 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
              +PG   VYN+L A  + +  G+D   + E L+       R   +       +I  D 
Sbjct: 279 KLSIPGIHNVYNSLAAICVGLEFGVDVDDMAEALKDFQPGKMRLNII--EKGDIKIIDDA 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y    +S++  L  +R     R I V G     G+        +GK+  D     ++T  
Sbjct: 337 YNANPDSMKAALNVLRDFPGKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSG 396

Query: 419 NPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG-KGHETVHI 474
           N      + I  E  +       I   N  E ++  + +++ + D+++V G +G +   I
Sbjct: 397 N----TSKYIAEESKVCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQI 452

Query: 475 V 475
           V
Sbjct: 453 V 453


>gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 462

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 183/470 (38%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+
Sbjct: 4   IKLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+
Sbjct: 57  EMAIEKGAALCIVS---EINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F                      S 
Sbjct: 114 TGSTGKTSTKDLVAAVLSE------KYKVFKTEGNF-------NNEIGLPLMIFKLDKSY 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  +      +  +  K      TN+G  HI+   +++    AK+ +  +   K
Sbjct: 161 DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEI-TDFFCK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +S  II  DD    +++    +   +V  +G   KF        +  +  +  I  +GK 
Sbjct: 220 DSILIINGDD----DLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKT 275

Query: 300 FD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG+  V N+L A      + I+   +   ++ L     R + V    +G  
Sbjct: 276 AYKGFSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
           I  D Y  + +S++  +  ++ I   R I + G   +          +++    +  I  
Sbjct: 334 IINDCYNASPDSMKAAIDVMKNIKGKRAIALLGSMRELGSEGYRAHREVSEYAREKGIDL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 394 LFSIGEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 461

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 150/393 (38%), Gaps = 18/393 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++  +  +L   L+   +     ++  +S+D+R +    +F A+ G   D H ++ +A+A
Sbjct: 1   MLKLNTQKLAEILNAKLVGNGLVEVENISTDTRKMVVNSLFFALKGENFDAHHYLDKAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S          + P LVV++T+  L   A  +       ++A+TG+SG
Sbjct: 61  QGAVALVVQKINS--------HLDVPQLVVEDTKIALGELAKWVRETVNPLVVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q+S ++S  +    T  +F  D  +           L          +
Sbjct: 113 KTTVKEMTASILQKSAVNSDTV--LFTEGNFNNDIGVP-------LTLLRLTPEHQFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     K       N+   H++   + +    AK  ++  L P    AI
Sbjct: 164 ELGANHQGEIAYTTSLAKPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYRGL-PASGVAI 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  +  YS +  +       +  +        +   V    +  +  +           P
Sbjct: 223 INKEHNYSIKWAQEIGERAIQYFAYQDATADFYADNVQFNESGSEFELHTPQGQIHISLP 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G     V + LE    V GR   +        +   Y   
Sbjct: 283 YLGEHNVKNALAATALAMNVGASLTQVKKGLEMRSQVKGRLFPIQPCENLLLLDDTYNAN 342

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
            +SL+  +  ++  ++ RI++V       +  +
Sbjct: 343 VDSLQSAISVLQKYSAFRILIVGDMAELGENSQ 375


>gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum WCFS1]
 gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
 gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum WCFS1]
 gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
          Length = 462

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 90/472 (19%), Positives = 170/472 (36%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q     +  + +  ++     W +  +  V+ DSR +QAG +F+ ++G   DGH +I
Sbjct: 1   MKMQ---VAEIAKAVQAVNA-EQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A + +S     D +  +  + P+++V +T   L         K    ++AV
Sbjct: 56  QSAIEHGAVATLWAS-----DHADDVPEDLPVIMVADTLTALQQLGQYYLQKINPKVVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +                ++    +       P+ L   LS   + 
Sbjct: 111 TGSNGKTTTKDMIASVLS----------TQFNVTKTHANFNNQIGVPVTL---LSMEPNT 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G        ++      T +G  HI++  T+    +AKM +   L  +
Sbjct: 158 EVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGL-KE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E   RA        + G                 Q    +    D 
Sbjct: 217 DGTFIFNGDEPLLQE---RAKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSLWPDN 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  P+ G + V NAL A  +     I  A   + +        R E++ T  RG  I  
Sbjct: 274 TYTIPMMGAYNVNNALAALLVADTFHIRPAAAQQAIASFVPTENRTEWL-TGYRGEAILS 332

Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           D Y     +   +L     +   G+ I V G   +       +   +A +L D A +   
Sbjct: 333 DVYNSNPTAARRVLAAFAAVPTKGQRIAVLGDMLELGDQSDALHMSLASEL-DPATIASV 391

Query: 419 NPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               E    +   +      G   + +   + + I      ++  D +++ G
Sbjct: 392 YLNGEHMRALAEVLQEKYPAGAVHYYQTDQQPQLIADLTATVSADDQVLLKG 443


>gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
 gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
          Length = 457

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 171/466 (36%), Gaps = 45/466 (9%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L+     +++   ++  P +  E+    +++D+R+++ G +F+A+ G K DGH +   A+
Sbjct: 5   LLVGKLVDILAAKTVGIPEKILEKSFTGITTDTRNLEPGQLFLALRGEKFDGHNYAALAV 64

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA  ++  +  + Q          P++ V+NT K     A     +    ++AVTG+ 
Sbjct: 65  EKGALTVIAEATNASQ------LEGLPLIQVENTLKAYQQIARWWRDQFQIPVIAVTGSV 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +    G          T+     +       P  L   L          
Sbjct: 119 GKTTTKELIAAVLSTKG----------TVLKTQANYNNEIGVPKTL---LELTPDHDYAV 165

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G      +      G  TN+G  HI    + +A   AK  L    +     A
Sbjct: 166 IEMAMRGSGQIAELTEIANPTVGVITNVGTAHIGLLGSTEAIAKAKCELLAH-MSNNGVA 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  D+   + +   A     + L+ G +G  +  + +          + VEG +F    
Sbjct: 225 VLNHDN--QRLIDTAAQVWQGQTLTYGLEGGDVQGQLIAPE------ILKVEGMEFP--I 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG     N L A  +   +G+D   +   L  + + PGR +     +    +   Y  
Sbjct: 275 PLPGRHNALNYLAALAIGKLLGVDWETLRNGL-NVELPPGRSQRYELPNDVVILDETYNA 333

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA-----IVTDDN 419
              S+   L+ +      R I V G   +       +  ++   +  +      I+ D++
Sbjct: 334 GVESMVAALEMLAQTPGKRHIAVLGAMKELGTQSGELHQQVGQKVEQLNLDGLRILVDES 393

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLV 463
               DPE     I  G+     +   +    +   +E +   D L+
Sbjct: 394 ----DPEA--EAIATGVTSVPVESFCDSNPLVEHLLEFVQPGDRLL 433


>gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Clostridium botulinum H04402 065]
          Length = 462

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 93/470 (19%), Positives = 186/470 (39%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+
Sbjct: 4   IKLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+
Sbjct: 57  EMAIEKGAALCIVS---EINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F  +  L              +   
Sbjct: 114 TGSTGKTSTKDLVAAVLSE------KYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEM 167

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+ H +   +         +  K      TN+G  HI+   +++    AK+ +  +   K
Sbjct: 168 GMNHFNEIHNMS-------EAAKPDIAIITNIGISHIENLGSRENILKAKLEI-TDFFCK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKD 299
           +S  II  DD    +++    +   +V  +G   KF  +   +       +  I  +GK 
Sbjct: 220 DSILIINGDD----DLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAENIEFDILEQGKT 275

Query: 300 F--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG+  V N+L A      + I+   +   ++ L     R + V    +G  
Sbjct: 276 AYKCFGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
           I  D Y  + +S++  +  ++ I   R I + G   +          +++    +  I  
Sbjct: 334 IINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGNEGYRAHREVSEYAKEKGIDL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      SE  ++   EI      +    N  EA +    ++   D++++
Sbjct: 394 LFSIGEFSEAYKEGFEEINK--ENYKSFLNNQEAAKYIKNIIKDGDIILI 441


>gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
 gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
          Length = 467

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 162/449 (36%), Gaps = 44/449 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+DSR +  G +FVA+ G + DGH FI  A++QG    +   +++ +     +    
Sbjct: 24  SAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQGITVFLAEESWAERH---ELPKGA 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V +T + L   A+    +     + VTG++GK++    + +I  ++G      G  
Sbjct: 81  GAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTTKEMLARILAQTGPGLKTEGNL 140

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + +                          +      +  S  G      +  +   G  T
Sbjct: 141 NNLIG-------------LPLTIFRLTGRERWAVFEIGMSEFGEIDRLAEIAEPQVGIIT 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N    H++   + +    AK  LF  L P  S A+   DD     V     +     L+ 
Sbjct: 188 NAFPAHLETLGSVEGVARAKGELFLRLKP-GSVAVYNVDDPL---VSACPTHLNVTRLTF 243

Query: 271 GYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G +G  +    + ++    +  T+ +   +        G   +YNAL AA    A+G+  
Sbjct: 244 GLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAAAAHALGVSG 303

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVV 387
            ++ + LE+      RF+       G  +  D Y     S+   L  ++ +   GR++ V
Sbjct: 304 EVIRQGLEEFSPYDKRFQLEEVA--GVTLIDDSYNANPASMAAALTTLKELQGEGRLVAV 361

Query: 388 FGCGGDRDQGK---RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-------P 437
            G   +   G       +GK+A    D   +           K+  E   G         
Sbjct: 362 LGDMLELGLGTEEAHRELGKLAAGSVDRLCL---------LGKLIDETAKGALEAGLPET 412

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +   +  +  +  +  +   D ++  G
Sbjct: 413 DLVLGRDHEQLAQELLTFVQPGDCILFKG 441


>gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU028]
          Length = 451

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 170/446 (38%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + IN VS DSR I  G +F+   G   DGH FI QA+  GA A+         + +    
Sbjct: 24  KTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAVFSEKENKYSEGNQG-- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRS 140
              PI+ V++T   L   A          ++AVTG++GK++    ++ +        +  
Sbjct: 82  ---PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQ 138

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  + +IG   T+                    L       ++ + +  S     +    
Sbjct: 139 GNYNNEIGMPLTL--------------------LELDEDTEISILEMGMSGFHQIELLSH 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +      TN+G  H+    +++    AK  +   L       I   D+   K  + + 
Sbjct: 179 IAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL-KTNGIFIYDGDEPLLKPHVNQV 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA  +++S+G      +   +  + N + +  ++  K+  +  P+ G   + NA +A  
Sbjct: 238 KNA--KLISIGLNSDNTYTCHMNDVKN-EGIHFTINQKE-HYHLPILGTHNMKNAAIAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G++  ++  ++  + +   R E   +++    I   Y  +  S++  +  +  + 
Sbjct: 294 IGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSGM- 352

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I++     +     + +  ++   L D  I        ++   I       +    
Sbjct: 353 KGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVL-YTFGKEASYIHDSGKIFVKEAK 411

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N+ + I+T I  +  +D ++V G
Sbjct: 412 YFDNKEQLIQTLISQVKPEDKVLVKG 437


>gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Erwinia sp. Ejp617]
          Length = 452

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 149/405 (36%), Gaps = 26/405 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I QL+   +   +  I +V++D+R   AG +F+A+ G + D H F+  AI  G   ++VS
Sbjct: 9   IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  +   +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  K---------RLPVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G  +                      L          + + A+  G 
Sbjct: 120 AILRECGETLYTAGNLNN-------------DIGVPLTLLRLKPQHRYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++       NL   H++   +      AK  +F  L P    AII  +     
Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINGESHDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S G      +   V          +     D D   PLPG   + N
Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFILHSPQGDVDVTLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +++G   + V   L  L  VPGR   +  ++    +   Y     S+    +
Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +   R+++V      G +  +  R +   I     D  + T
Sbjct: 346 VLAGMPGYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLST 390


>gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
 gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
          Length = 462

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 180/475 (37%), Gaps = 49/475 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  K+    +  L+   M W +++I  V  D+R +    +FV ++GN  DGH FI +AI 
Sbjct: 4   LTIKEIAAAVGALNDTSM-WSDQEIISVDFDTRKLVKESLFVPLIGNN-DGHQFILKAIE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A + S   SL+D    + ++ P++ V++T K L   A     K    ++ +TG++G
Sbjct: 62  NGARASLWSK--SLKDLPFEVAADFPVIQVEDTLKALQDLAKFYLTKVNPKVVGITGSNG 119

Query: 126 KSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           K++       +        +  G  +  IG   TI     D                   
Sbjct: 120 KTTTKDMTDAVLSSQYRVHKTQGNFNNHIGLPITILEMPIDTE----------------- 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  + +  +  G  +   D  +      T +G  HI++  ++    +AKM +   L 
Sbjct: 163 ---VVILEMGMNHAGEIKVLSDLAEPDVAIITMIGESHIEFFGSRAGIADAKMEISSGL- 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +    I   ++   +E +    +   +      +     L  + A  N+   T + E  
Sbjct: 219 KENGVLIYPGEEPLLQERVTFLTDKQLKTFGTAAENDLYPL-NIDAQMNQTSFT-TNETP 276

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G + V NAL A    I +G+        L K  +   R E++     G RI
Sbjct: 277 DMTISLPVLGTYNVNNALAALMAGIVLGVPIQKSAPKLAKFQLTKNRTEWL-VGINGSRI 335

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL----DLADI 412
             D Y     +++ +L N  T  + G+ IV+ G   +  +    +   I      +    
Sbjct: 336 LNDAYNANPTAMKAVLDNFSTFENEGKKIVILGDMLELGEHSSELHLSIKESLNPNQIKK 395

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+       E+   +   +         F   G++   I+ A E +   D +++
Sbjct: 396 VIL-----YGEEMSVLYESLQETFANDNLFYFTGDKEPLIQLAKEQIEPGDYVLI 445


>gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
 gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
          Length = 452

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 161/404 (39%), Gaps = 25/404 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +++   +   +  +N+V++D+R + AG +FVA+VG + D H F  +AIA GA+A++VS
Sbjct: 9   LAEITGGTLHGSDFTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEAIANGAQALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +           P +VV++TR       + +  +    ++A+TG+SGK+SV     
Sbjct: 69  KHLPVA---------VPQVVVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I ++ G + +  G  +                      L   +      + + A+  G 
Sbjct: 120 AILRQCGETLYTAGNLNNDYGVPMT-------------LLRLTAEHQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D +K  +    NL   H++   +      AK  +F+ L P    AI+  +     
Sbjct: 167 IAYTTDLVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFQGL-PAHGIAILNDESNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S          + +    +     ++      + + PLPG   + N
Sbjct: 226 NWQNTLQDKTVWRFSPQAGECDFSARDIRIAQDGTHFVMNTPRGTAEIVLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +++    + V + L+ L  VPGR   V  ++    +   Y     S+   ++
Sbjct: 286 ALAAAALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSAHQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVT 416
            +  +   +++V        ++       +G+ A +     ++T
Sbjct: 346 VLSEMPGYQVLVAGDMAELGEETEKCHREIGEAAREAGLDRVLT 389


>gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 476

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 95/480 (19%), Positives = 185/480 (38%), Gaps = 39/480 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + D ++    +++  +   P       I  +S DSR ++ G  F AI G + DGH F+  
Sbjct: 1   MSDWLWTS-NDMVEAMEGRPFGNLPGGITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTS 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   S  P++VV++  + L+        +    I+AVTG
Sbjct: 60  AMAAGAGLLVVAEHR----LPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G     +               +  +   +   L+ + +   
Sbjct: 116 SVGKTTTKEALRHVLSEVGKVHASV--------------ASFNNHWGVPLTLARMPADTD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + H   +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 162 YGVFEIGMNHHDEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   K++ + A  AG   + + G   +    L++V        +T+ +   +
Sbjct: 221 GYALLNRDDKRFKQLEELAEKAGVEHIATFGENARSDYRLREVKLHPTCSCMTVKIGTHE 280

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 281 AAVKVGMPGRHIVQNMLAVLGAADLVGADIAKVMMAMATLSAEGGRGARHVLQHPEGTFT 340

Query: 359 YVD--YAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L  + + T     GR I V G   +  +    +   +A  + D 
Sbjct: 341 LIDESYNANPTSMRAALSLLHSTTPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDA 400

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV-AGKG 468
            + T        P+   + + + +P  I+   R    E +   I+ +   DV++V + KG
Sbjct: 401 EVNT---LFIGGPD--MSALKNALPVEIQTEYRQSTDELLPLVIKAVRPGDVIMVKSSKG 455


>gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
 gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea]
 gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
          Length = 455

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 151/395 (38%), Gaps = 28/395 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +   VSSDSR I    +FVA+ G+K DGH F   A+  GA A++V     L     
Sbjct: 19  GADVEFCHVSSDSRAIPEQTLFVALKGDKFDGHNFANTAVENGAIALLVDHELPL----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N   ++V +T++ +    + L        +A+TG++GK+SV   V  I  +     
Sbjct: 74  ----NITQVIVKDTQRAMGELGAYLKELIQPRSVALTGSNGKTSVKEMVATILSQRHKVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G          +       P+ L + L      GV    + A+  G   +    +K 
Sbjct: 130 YTAG----------NFNNEIGVPLTLLR-LEADDEFGVFE--LGANHKGEIDYTSSLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   + +   +AK  +F  L P    AII ADD ++  ++  + +  
Sbjct: 177 DVALVNNVASAHLEGFGSLEGVASAKSEIFNHLTPT-GTAIINADDGFASVMLAASTDYT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                +                   +  +S   +      PLPG  QV NAL A  +C++
Sbjct: 236 QLTFGIDSAADIQASDLEADPMGCYRFKLSYLRETLLIALPLPGRHQVSNALAATAICLS 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            G+    +      L  V GR   + T     R+  D Y     S+   +  +  I   R
Sbjct: 296 FGLTLDEIKLGFSLLVPVKGRM--LPTQLGRVRVIDDSYNANPASVTAAVDWLHEIEGHR 353

Query: 384 IIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVT 416
            +V+   G   D        +G++A      +++T
Sbjct: 354 CLVLGDLGELGDNAPLLHTELGELARQKGLDSLLT 388


>gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
 gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
          Length = 455

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 171/476 (35%), Gaps = 45/476 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH FI
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +    +  +        +  ++ VD+    +   A     K    ++ +
Sbjct: 54  ASAINNGASATLWKKGHPNK------PEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSK------RFNVHKTQANFNNEIGVPM-------TILEMKPNT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +         T +G  HI++  ++    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEI-TDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  ++   A     + G++ +   +            T +V   + 
Sbjct: 214 DGEFIFNGDEPLLQERAEKLDQAKA---TFGFRDEDT-VHATGFKSYMHHATFTVNDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+      G  I  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPTANRMEWEK-GDAGESIMS 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           D Y     ++  +L +   +     GR I V G   +  +    +   +A  + D  I+ 
Sbjct: 329 DIYNSNPTAVRAVLTSFGQVEVKDGGRRIAVLGDMLELGKKSPELHAGLADTM-DPQIIN 387

Query: 417 DDNPRSEDPEKIRAEII-HGIPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +      + + +   +     P  +     E+ +R+  I      +   D++V+ G
Sbjct: 388 EVYLYGSEMKNLYDALQGKYEPEHLHYYTQEQTDRM--IDDLKNDIKSDDIVVLKG 441


>gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 458

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 181/484 (37%), Gaps = 49/484 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   +++N   +   ++ +     VS D+R ++ G ++V I G + DGH F+ +AI  
Sbjct: 5   TLKQIEKMVNGTGL-AEKYFDMTAQGVSIDTRKMEKGNVYVPIQGERFDGHSFVEKAIES 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +               +N P++ V++T + L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWKRDVQ------NPPANMPVIFVEDTLEALQMLAKNYRDQLNVKVVGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  +D                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEEDTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  + +  SS G  +      +  A   TN+G  H+    ++ A   AK+ +   L  
Sbjct: 160 --IAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           +     ++ G  +    +   V         T++   +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPKMDLAVETITFGDARANDYYPTSVTLQATGTHFTMN-RDE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYNAL +  +    G+    + + L  L +   R E V TNS    I
Sbjct: 275 NVLFYLPVLGKHNVYNALASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEVVKTNSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHET 471
            T          +I        P    K   N+ E ++   ++++ +DV++V A +G + 
Sbjct: 395 FT----YGRLGAQIAEGAKINFPNERVKAYDNKEELVKNLKDIVDMEDVVLVKASRGMKM 450

Query: 472 VHIV 475
             I+
Sbjct: 451 EEII 454


>gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Clostridium botulinum F str. 230613]
          Length = 462

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 183/470 (38%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+
Sbjct: 4   IKLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+
Sbjct: 57  EMAIEKGAALCIVS---EINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F                      S 
Sbjct: 114 TGSTGKTSTKDLVGAVLAE------KYKVFKTEGNF-------NNEIGLPLMIFKLDKSY 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  +      +  +  K      TN+G  HI+   +++    AK+ +  +   K
Sbjct: 161 DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEI-TDFFCK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +S  II  DD    +++    +   +V  +G   KF        +  +  +  I  +GK 
Sbjct: 220 DSILIINGDD----DLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKT 275

Query: 300 F--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG+  V N+L A      + I+   +   ++ L     R + V    +G  
Sbjct: 276 AYKCFGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
           I  D Y  + +S++  +  ++ I   R I + G   +          +++    +  I  
Sbjct: 334 IINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 394 LFSIGEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 451

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 175/456 (38%), Gaps = 40/456 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + IN VS DSR I  G +F+   G   DGH FI QA+  GA A+         + +    
Sbjct: 24  KTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAVFSEKENKHSEGNQG-- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRS 140
              PI+ V++T   L   A          ++AVTG++GK++    ++ +        +  
Sbjct: 82  ---PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQ 138

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  + +IG   T+                    L       ++ + +  S     +    
Sbjct: 139 GNYNNEIGMPLTL--------------------LELDEDTEISILEMGMSGFHQIELLSH 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +      TN+G  H+    +++    AK  +   L       I   D+   K  + + 
Sbjct: 179 IAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL-KTNGIFIYDGDEPLLKPHVNQV 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA  +++S+G      +   +  + N + +  ++  K+  +  P+ G   + NA +A  
Sbjct: 238 KNA--KLISIGLNSDSTYTCHMNDVKN-EGIHFTINQKE-HYHLPILGTHNMKNAAIAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G++  ++  ++  + +   R E   +++    I   Y  +  S++  +  +  + 
Sbjct: 294 IGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVM- 352

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I++     +     + +  ++   L D  I        ++   I       +    
Sbjct: 353 KGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVL-YTFGKEASYIYDSGKVFVKEAK 411

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
              N+ + I+T I  +  +D ++V G +G +   IV
Sbjct: 412 YFDNKDQLIQTLISQVKPEDKVLVKGSRGMKLEEIV 447


>gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
 gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
          Length = 450

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 96/404 (23%), Positives = 155/404 (38%), Gaps = 31/404 (7%)

Query: 11  FPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+N +  +   Q    +I EV+ D+R + AG +FVA+ G + DGH F          
Sbjct: 1   MSELLNAEFIVSDKQGDNIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAED------- 53

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              V++       S  +    P LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV
Sbjct: 54  --AVAAGAGALLVSKRLLVGVPQLVVKDTRLALGQFAAWIRQQVPARVVALTGSSGKTSV 111

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 I +  G   +      T  +F  D  +           L   +      + + A
Sbjct: 112 KEMTAAILRECGNVLY------TAGNFNNDIGVP-------LTLLRLTAEYDFAVIELGA 158

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G   +  D  +  +    NL   H++   +      AK  +F  L P    AII AD
Sbjct: 159 NHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGL-PANGTAIINAD 217

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                   +  HN   RV   G Q       +   V         T+           PL
Sbjct: 218 SNDWPHWQETLHNK--RVWRFGLQAAEDIDFYATDVQITPQATHFTLHSPFGTVTIELPL 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL AA L +++G D + V + L +L  VPGR   +   +    +   Y    
Sbjct: 276 PGRHNIANALAAAALAMSVGADLSAVRQGLMQLQAVPGRLFPIQLATGKLLLDDTYNANV 335

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALD 408
            S+    + +  +   R++VV   G   +        +G+ A  
Sbjct: 336 GSMTAAAQVLAEMPGYRVMVVGDMGELGETAIDCHRQVGEAAKQ 379


>gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis XB6B4]
          Length = 470

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 168/429 (39%), Gaps = 44/429 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  +   E+   +       ++++I     DSR +++G++F+A+ G K DGH FIPQ
Sbjct: 1   MKNMTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +GA A++     S            P + V++T   +   A+         ++ +TG
Sbjct: 61  VFEKGALAVLSEQELSEPAG--------PYIRVESTLGAMKKLAAYYRRSLDIKVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T  +F         + I L   +  +  Q  
Sbjct: 113 SVGKTSTKEMIASVLSQ------KYNVLKTEGNF--------NNEIGLPLTIFKIREQHE 158

Query: 183 THVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     S   + HRL  +        TN+G  H++   T+     AK   FE L P E
Sbjct: 159 VAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTP-E 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIH------ 286
             A++  DD    E  K  +        +G +          K++  K+V A        
Sbjct: 218 GTAVLNGDDDKLCE-KKMVNGKPVVFYGIGKEAKLAKTEQGEKYLAEKEVYATDVEPVGL 276

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +  +  I +  + F    P+ GE  VYNAL A  +   +G+    +   +E +  + GR 
Sbjct: 277 DGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS 336

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
             +    +GG   +D  + +N + M    ++     GR I V G  G+  + ++ +   +
Sbjct: 337 NLIH---KGGMTIIDDCYNANPVSMKASIDVLAAAPGRKIAVLGDMGELGENEQELHAMV 393

Query: 406 ALDLADIAI 414
                   I
Sbjct: 394 GEHFEGKGI 402


>gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 460

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 101/417 (24%), Positives = 175/417 (41%), Gaps = 34/417 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++      E  N +     QW++ +I  V+ DSR + +G +F+ + G + DGH ++
Sbjct: 3   MKLAEIAKAIGAE--NNIE----QWKDVEITSVAFDSRQLDSGALFIPLQGAQ-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A GA A + +S     D   T   + PILVVD+  + L   +     K    ++AV
Sbjct: 56  ESAFANGAVATLWAS-----DHDVTTTEDQPILVVDDPLESLQQLSKYYLHKINPIVVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++       I         Q+  T T ++F  +  +           L+  SS 
Sbjct: 111 TGSNGKTTTKDMTASILST------QLNVTKTHANFNNEIGVPV-------TLLNMESST 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G        +       T +G  HI++  T+    +AKM +   L  +
Sbjct: 158 EVVVVEMGMDRPGQLDFLSKLVSPDFAVITMIGEAHIEFFGTRDKIADAKMEIVHGL-KE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   I   D+   +E   RA N   R ++ G Q     +   V          ++ E  D
Sbjct: 217 DGTFIFNGDEPLLQE---RAANVEQRKVTFGRQLTDDFYATSVNQHETSIDFKVN-EWPD 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +F  P+ GE+ V NAL A  +   + I  A + + L+ + +   R E+V   ++G RI 
Sbjct: 273 EEFTIPMVGEYNVNNALAAIAVGKQLHITPAHIKKALKNVELTENRAEWVN-GAQGERIL 331

Query: 360 VD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            D Y     + + +LK I  +  +G+ I V G   +       +   +A ++    I
Sbjct: 332 SDVYNSNPTAAKQVLKTIEELPTTGKRIAVLGDMLELGDASARLHASLAANIDPKKI 388


>gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
 gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
          Length = 458

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 167/460 (36%), Gaps = 55/460 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGIIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVES 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWMKDV------ANPPENLPVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +S    V  +        +  G  +  IG   TI +  ++                    
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTE------------------ 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L  
Sbjct: 160 --VAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL-- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +E    +Y  D           N     ++ G  +    +   V          ++ + +
Sbjct: 216 QEGGVFVYNGDEPLLTNRVPEMNLMAETVTFGDARANDYYPTTVTLQATGTHFKMN-KDE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I
Sbjct: 275 NISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++E     +  +      +V         D++      +GK+        +
Sbjct: 335 NDAYNASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKIAFV 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAI 449
            T          ++ A+I  G         ++  +  EA+
Sbjct: 395 FT--------YGRLGAQIAEGAKINFPSERVKAYDNKEAL 426


>gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Ruminococcus obeum A2-162]
          Length = 456

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 89/467 (19%), Positives = 174/467 (37%), Gaps = 34/467 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  E+ +          +R+++ +++DSR I+   +FV IVG + D H FIP 
Sbjct: 1   MKNLTLRNLTEVCSGTWHGDDALLDREVSAITTDSRKIEKDCLFVPIVGERVDAHRFIPD 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +A+GA A +     S  D+        P + + ++ + +   A     +    ++ +TG
Sbjct: 61  VMAKGALATLSERELSDADY--------PYIQITSSLQAVKDIAEFYLQQLQLPVIGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  + +       +     T  +F  +N L  P  ++  +         +
Sbjct: 113 SVGKTSTKEVIASVLKE------KYRTLKTQGNF--NNELGLPLTVFRLRE-----DDQI 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G         K      TN+G  H++    +     AK  +F  +LP   
Sbjct: 160 AVLEMGISDFGEMTRLTRIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFRSMLP-SG 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  DD     V +  H        +  +      + V          I +    FD 
Sbjct: 219 HIVLNGDDDKLATV-EGYHGVKPVFFGLDAKRDVYADQIVSRGLKGVSCRIHMGEDAFDV 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
           L P PG   VYNAL AA +    G+    +   +E L  + GRF+ + T +    +  D 
Sbjct: 278 LVPTPGIHMVYNALAAAAVGRIYGLTIEEIKRGIESLETIRGRFKMIETEN--FLVVDDC 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDN 419
           Y     S++  L  +      R+ ++   G   + +      +G+ A        +    
Sbjct: 336 YNANPMSMKASLDVLHDGEGRRVAILGDMGELGENEISLHEEVGEHAAKCGIDVCIC--- 392

Query: 420 PRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVV 464
              E    I        P F    + +R   ++     + K D ++V
Sbjct: 393 -VGELSLHIAEAARKADPDFEVHYEKDRESLLKNLGGYVRKGDTILV 438


>gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 463

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 178/471 (37%), Gaps = 38/471 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+D+      ++++  ++      ER++ ++++DSR ++ G +F+AI G + DGH +I
Sbjct: 1   MKLRDIKEGTNGKILSGSTL----DLEREVGDITTDSRLVKKGDVFIAIKGERVDGHDYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA+A+V+S   S+Q     I  +   L VD+T   L   A+    K P   + +
Sbjct: 57  QDAVSRGAQALVLSRTPSIQ-----IPESVLALEVDDTVLALGKLAAYWRNKMPAKTIGI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S       I  R       +    + ++              +  A+  +   
Sbjct: 112 TGSVGKTSTKEVTASILSR---KFVTLRSQKSYNNEIGLPLTLLGLTPEVEVAVLEMG-- 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                   A   G  ++     K   G    +G  HI    + +     K  L   L P 
Sbjct: 167 -------GAYRMGEIEYLCSIAKPFIGVVIVVGYAHIGRMGSLERIAENKSELVRSL-PS 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E  AI+  DD   K +      A      +  +        V    N  +  + +  + +
Sbjct: 219 EGFAILNRDDHRVKAMAD-VTKAHVVWYGLDEESYIRATDVVSEGLNGIRFVLHIGDRSY 277

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G   V+  L +  +   +G++   ++  +++L    G    V     G  I  
Sbjct: 278 QVKAPLLGRHSVHTILASVAVAHVMGMEDQEIVHAIKELPP--GLRLIVNKGINGSTILD 335

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVT 416
           D Y     S+   L  +  I  G  I V G         +     +G  A ++ D     
Sbjct: 336 DTYNANPTSMLAALNLLNDI-EGHRIAVLGDMAELGHFTEEGHLKVGARAAEVCDKLYT- 393

Query: 417 DDNPRSEDPEKI-RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 E  + I R  +  G+     +   +  EAI      L++ DV++V
Sbjct: 394 ----VGELAQIIARGALQAGMNPGDVVTLKDYQEAIDVLKRDLHEGDVVLV 440


>gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis M50/1]
          Length = 470

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 168/429 (39%), Gaps = 44/429 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  +   E+   +       ++++I     DSR +++G++F+A+ G K DGH FIPQ
Sbjct: 1   MKNMTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +GA A++     S            P + V++T   +   A+         ++ +TG
Sbjct: 61  VFEKGALAVLSEQELSDPAG--------PYIRVESTLGAMKKLAAYYRRSLDIKVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T  +F         + I L   +  +  Q  
Sbjct: 113 SVGKTSTKEMIASVLSQ------KYNVLKTEGNF--------NNEIGLPLTIFKIREQHE 158

Query: 183 THVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     S   + HRL  +        TN+G  H++   T+     AK   FE L P E
Sbjct: 159 VAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTP-E 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIH------ 286
             A++  DD    E  K  +        +G +          K++  K+V A        
Sbjct: 218 GTAVLNGDDDKLCE-KKMVNGKPVVFYGIGKEAKPAKTEQGEKYLAEKEVYATDVEPVGL 276

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +  +  I +  + F    P+ GE  VYNAL A  +   +G+    +   +E +  + GR 
Sbjct: 277 DGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS 336

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
             +    +GG   +D  + +N + M    ++     GR I V G  G+  + ++ +   +
Sbjct: 337 NLIH---KGGMTIIDDCYNANPVSMKASIDVLAAAPGRKIAVLGDMGELGENEQELHAMV 393

Query: 406 ALDLADIAI 414
                   I
Sbjct: 394 GEHFEGKGI 402


>gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
 gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
          Length = 458

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 86/456 (18%), Positives = 162/456 (35%), Gaps = 37/456 (8%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L        E ++  V SDSR +Q G +F A+ G + DGH FI +  ++G  A+V     
Sbjct: 14  LGELRAGSPETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEVASKGVAAVVAERTR 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                         ++VVDNTR+ L   A+R        I+AV G++GK+S    +  + 
Sbjct: 74  MTGKMPE-----CGVIVVDNTRQALGRLAARYRQDFQLPIIAVGGSNGKTSTKELLAGVL 128

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           ++               +               A  L    +     + +  +  G    
Sbjct: 129 KK-------------RLNTLWSEASFNNDIGVPATLLRLEKANQAAVLEIGTNHPGELAP 175

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            +  I+   G  T++GR+H+++        + +  L  ELLP +    +  D  ++K++ 
Sbjct: 176 LVSMIQPKFGIITSIGREHLEFFGDVAGVADEEGWL-AELLPADGKLFLNGDSDWTKQIA 234

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNA 315
           +R      RV   G  G    +             +    K     +   L G  Q  NA
Sbjct: 235 RRTRATVVRV-GFG-AGNDWRVTDAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQALNA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
             A  +   +G+    + + L        R +   +N  G  +  D Y   ++S+   L 
Sbjct: 293 TFALAVGAELGLTRDHLEQGLSDCKSAKMRLQL--SNWNGICVIDDAYNANADSMLAALN 350

Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++ +   GR + V G   +          ++   +A++ +      R     K+   + 
Sbjct: 351 TLQEMPCVGRRVAVLGDMAELGAHSEAAHEEVGRRVAELGL-----NRLFAVGKMAGAMA 405

Query: 434 -----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 G+    E  +   A       L   DV+++
Sbjct: 406 KSARDAGLAEASEFDDVPAAAAAVKNFLKAGDVVLL 441


>gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
          Length = 455

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 153/418 (36%), Gaps = 36/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +    +        + ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLWKKGHE------GMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    S 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVPV-------TILEMKPST 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + ++      T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E   RA        + G++ +          +     T  V G   
Sbjct: 214 DGKFIYNGDEPLLEE---RAAKIKQEKSTFGFREEDTVFATTFRSYM-HHATFEVNGSTQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++      G  I  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQW-KKGDVGEAIMD 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           D Y     +++ +  +   +     GR I V G   +       +   +A  L    I
Sbjct: 329 DVYNSNPIAVKAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASLDPAII 386


>gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
 gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
          Length = 451

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 169/453 (37%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    IN V+ DSR I+   +F+   G   DGH F+ QA+  GA A        L +  
Sbjct: 20  QYLSHSINGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELSEDI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  PI+ V++T K L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  EG-----PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLTTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGMPLTI--------------------LDLDEDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    +++    AK  +   L  +    I   D+   K  
Sbjct: 175 LLSSIAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KENGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +++ + A  R++SVG  G    L         + +  ++  K+  F  P+ G   + NA 
Sbjct: 234 LEQLNKA--RLISVGL-GNSNTLVCHVDDIETEGIAFTINDKE-SFTLPILGTHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + +++  + +   R E   T +    I   Y  +  S++  +  +
Sbjct: 290 IAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++   +I++   V   G +       +   +     D+     D  R      I     
Sbjct: 350 SSMEGRKILILADVLELGENSQSMHEEVGAYLNNKAIDVLYTYGDEARF-----IFNIGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + +P      ++ E I+    ++ + D ++V G
Sbjct: 405 NEVPTAQHFDDKSELIKELKIIVKENDKILVKG 437


>gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 452

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 166/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLTQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+K+ +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKKVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 GTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I   I  L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLINDLKAHDRVLVKG 437


>gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase
           [Clostridium sticklandii DSM 519]
 gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Clostridium sticklandii]
          Length = 457

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 163/453 (35%), Gaps = 51/453 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             KI  V +DSR IQ    ++AI G   DG+ FI QAI   A  I+ +   S ++     
Sbjct: 23  NPKIANVVTDSRKIQENDCYIAIKGENFDGNDFIEQAINNKASVILSNRQSSNKE----- 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                ++ V++T   L   A     +     LAVTG+SGK++    +  +          
Sbjct: 78  -----VITVEDTVIALGSIAKNYLMQFDIKKLAVTGSSGKTTTKDMLYYVFNE------H 126

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                T  ++                AL+           +  S+ G   +    ++   
Sbjct: 127 FSTHRTDGNY-------NNEIGLPLTALNIDKGYEAAIFEMGMSALGEIDYLAQIVRPNI 179

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI+  ++Q+  F AKM +    L  +   I+  DD Y   + +  +     
Sbjct: 180 AIITNIGSCHIEILKSQENIFKAKMEI-SNYLNNDDYLIVNGDDKYLTSLSENEYKFNLI 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
               G + +        A+  + +  ++  G +  F  P  G   V NAL A    +   
Sbjct: 239 KYGFGEECQL-RASDYKAVDGQSEFWVTGMGINRRFTLPAIGLHNVSNALSAIAAGLIYK 297

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I +  +   L K      R + +  N+    I   Y     S+E ++ +  +   GR I 
Sbjct: 298 IPTEKIQAGLMKFQPSKLRMQILEKNNIKY-INDSYNANPESMEAVITSFESYARGRKIA 356

Query: 387 VFGCGGDRDQ---GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IE 441
           + G   +  +        +G++A +  D+               I +++ H    F   E
Sbjct: 357 ILGDMLELGEFSVAAHERIGRLASEKFDLVFF------------IGSQMKHAFDNFSTDE 404

Query: 442 KGNRIE--------AIRTAIEMLNKQDVLVVAG 466
             ++ +        AI     ++   D +++ G
Sbjct: 405 NTDKRKYHFIDNNIAIEEIKRIIKYGDTILLKG 437


>gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 452

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 150/387 (38%), Gaps = 25/387 (6%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            +Q ++  I++V++D+R + AG +FVA+ G + D H F+  A   GA A++VS    +  
Sbjct: 16  TLQGQDLTIDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSAKENGAGALLVSRKLDI-- 73

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                  + P +VV +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G
Sbjct: 74  -------DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGQCG 126

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            + +  G  +                      L          + + A+  G     +  
Sbjct: 127 NTLYTAGNLNN-------------DIGVPMTLLRLTKEHEFAVIELGANHQGEIAWTVSL 173

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A    NL   H++   + +    AK  ++  L P +  AI+ AD+           
Sbjct: 174 TCPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTGL-PADGIAIMNADNNDWLNWQSIIG 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +      S            +    +  + T++      D L PLPG   + NAL AA L
Sbjct: 233 SRKTWRFSPNAANSDFTATNIHVTSHGTEFTLNTPTGGVDVLLPLPGRHNIANALAAAAL 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A+G     +   L  L  VPGR   +        +   Y     S+   ++ +  +  
Sbjct: 293 SMAVGASHDAIKTGLANLKAVPGRLFPIPLAENKLLLDDSYNANVGSMTAAVQVLSEMPG 352

Query: 382 GRIIVVFGCGGDRDQG--KRPIMGKIA 406
            R++VV   G   D+       +G+ A
Sbjct: 353 YRVMVVGDMGELGDESEACHIQVGEAA 379


>gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri
           ATCC 33323]
 gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
 gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
          Length = 455

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 146/417 (35%), Gaps = 34/417 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +    +  +       ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLWKKGHEGK------PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             PS   L          
Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVHKTQANFNNEIGVPVTILEMKPSTEIL---------- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G   H  + ++      T +G  HI++  T+    +AKM +  + L +
Sbjct: 158 ---VLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E   RA        + G++ +          +     T  +   + 
Sbjct: 214 DGKFIYNGDEPLLEE---RAAKIKQDKSTFGFREEDTVFATTFRSYM-HHATFEINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++   +     +  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            Y     +++ +  +   +     GR I V G   +       +   +A  L    I
Sbjct: 330 VYNSNPTAVKAVTTSFGQVMVQDGGRRIAVLGDMLELGDESAELHASLANALDPAII 386


>gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
 gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
          Length = 487

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 107/501 (21%), Positives = 179/501 (35%), Gaps = 51/501 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +L+Y   P    Q+   P  W +R+I  V  DSR +  G +FVA+ G + DGHL++
Sbjct: 2   IRLDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLYL 61

Query: 61  PQAIAQGAEAIVVSSA------------------YSLQDFSA---TIRSNTPILVVDNTR 99
           P  + +GA A +VS A                      D SA           + VD+  
Sbjct: 62  PDVVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDPL 121

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
             L   A          ++ +TG+ GK+S    V  +  +            T+ S    
Sbjct: 122 CALQRAAVYHRRMFTPTVIGITGSVGKTSTKEVVAAVISQ---------RLRTLKS---- 168

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
            R         A  L   +   V  + +   + G  +      +   G  TN+G  H++ 
Sbjct: 169 QRSFNSDITLPATLLGLTADHQVAVLEMGMWAAGEIRFLAALARPHIGIVTNVGPSHLER 228

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFI 277
             + +A  NAK  L E L P +   I+ ADD     V   A      V++ G+       
Sbjct: 229 LGSIEAIANAKAELPESL-PPDGWCILNADDP---RVAAMAKRTPAHVVTYGFAPHADVR 284

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            ++ +       ++T+S +G+      PL G    Y  L A    + +G+D   +   L 
Sbjct: 285 AVEVISHGLYGIELTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALVVGLDWEAIAAGLR 344

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD--- 393
                  R      N + G   +D  + +  L  I    +   T GR I V G   +   
Sbjct: 345 D---PGERLRLRVVNGQQGVTIIDDTYNAAPLSTIAALEVLAETPGRRIAVLGEMLELGS 401

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
             +     +G  A   AD+ +      +++                I   +   AI    
Sbjct: 402 ATEEGHRQVGAAAARTADLLV--AVGRQAQTVAAAARAAGMAEAQVIVCADNDAAIDRLR 459

Query: 454 EMLNKQDVLVVAGKGHETVHI 474
            ++   D L+V  KG   V +
Sbjct: 460 SLIQAGDCLLV--KGSRGVQM 478


>gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
 gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
          Length = 482

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 102/449 (22%), Positives = 174/449 (38%), Gaps = 33/449 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V++DSR +Q G +FVA++G + D H F+P  +A+GA A++VS   +     A
Sbjct: 25  GPDAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPLA----GA 80

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              S   +L V +TR  L   A+    + P  ++AVTG++GK++V   +  +  R+    
Sbjct: 81  LDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFARAVGEE 140

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
            ++     +++            I L   L  L +Q    V     +H  +   L  I +
Sbjct: 141 ARLATAGNLNN-----------DIGLPLTLFRLHAQHRLAVLELGMNHPGETEVLATIAQ 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAH 261
                  N  R+H ++  + +A       +   L P +  A+   D A   E   + RA 
Sbjct: 190 PTVALINNAQREHQEFMVSVEAVAIEHAAVLAAL-PADGVAVFPRDAANGGEYAPLWRAA 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               RVL  G +G  +    V    + Q + +      F F  PL G     NAL A   
Sbjct: 249 AGTRRVLDFGIEGGAVSAT-VTDTADGQHIDVHAPDLRFSFTLPLLGVHNARNALAATAC 307

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A GI   ++ + L     V GR +       G  +   Y    +S+   +  + T+ +
Sbjct: 308 SLAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVVDDTYNANPDSVRAAIDALATLPA 367

Query: 382 GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R +V+   G    QG    + I         D  + T +  R      +      G   
Sbjct: 368 PRWLVLGDMGEVGTQGPAFHQEIGAYARERGIDAVLATGELARH-----MVDAFGSGARH 422

Query: 439 FIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           F       EA I   +  +     ++V G
Sbjct: 423 FAS----AEALIEQGVPAIAPGATVLVKG 447


>gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 452

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 165/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I   I  L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLINDLKAHDRVLVKG 437


>gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
 gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
          Length = 459

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 161/408 (39%), Gaps = 33/408 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL  +L+   +   +  I+ VSSDSR + +  +FVA+ G+  DGH F   A+ 
Sbjct: 1   MIRVSLAELATRLNGQLI-GDDLPIDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V     +         +   +VV N+++ +    + +  +     +A+TG++G
Sbjct: 60  AGANALLVERELPI---------DAAQIVVANSQRAMGEIGAYVREQLAPTCVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   +  I  +     +  G          +       P+ L + L      GV   
Sbjct: 111 KTSVKEMIATILSQQHRVLYTAG----------NFNNEIGVPLTLLR-LKQGDEFGV--F 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   + +    AK  +F  +      A+
Sbjct: 158 ELGANHAGEIDYTSGLVKPSVAMVNNVASAHLEGFGSLEGVAKAKSEIFNHVTV-GGTAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFD 301
           I ADDA++  +++ + +       V  +            +   + +   ++    +   
Sbjct: 217 INADDAFADVMLQASSHVKQLCFGVKNEASRDLDVFATDLIADSYGRYAFSLCYGAEVHR 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G  QV NAL A  +C+A+G+  A + + L +L  V GR            +  D
Sbjct: 277 VELPLAGRHQVSNALAATSICLALGLSLAHICQGLSQLKPVKGRMLPSVLGR--VTVIDD 334

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIA 406
            Y     S+   +  ++ I   R +V+   G   D        +G +A
Sbjct: 335 SYNANPASVGAAIDWLQEIKGNRCLVLGDLGELGDNAALLHRELGALA 382


>gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
 gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
          Length = 493

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 95/504 (18%), Positives = 183/504 (36%), Gaps = 56/504 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +++Y   P    Q+   P QW+E    E   DSR ++ G +FVA+ G + +GH F+P 
Sbjct: 4   LANILYGVQPAWSRQMPYIPPQWQELVFGETVIDSREVEPGTLFVALAGERTNGHTFLPD 63

Query: 63  AIAQGAEAIVVSS---------------------AYSLQDFSATIRSNTPILVVDNTRKF 101
            IA+GA   +VS                        +     +       ++ VD+    
Sbjct: 64  VIARGALGALVSRTEIEARTTILARTPRRWALVNPVTGAGLDSATPGVCLLIAVDDPLMA 123

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L   A     +    ++ +TG+ GK+S    +  +  +   +              +  R
Sbjct: 124 LQRLAVYHRRQLTPTVVGITGSVGKTSTKEALAALLSQRFCT-------------LKSKR 170

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                       L    +  V  + +   + G  +   D  +   G  TN+G  H++  +
Sbjct: 171 SFNSEATVPTTLLQLAPAHEVAVLEMGMWAPGEIRFLADLARPQIGLVTNVGPTHLERLK 230

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHL 279
           +Q+A + AK  L EEL P++  A++ ADD     +         RV S G          
Sbjct: 231 SQEAIWYAKAELVEEL-PRDGWAVLNADDPLVWAMRDM---TNARVFSYGLAPHATLWAN 286

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +      +   + +  + +      PL G   +Y AL A  + + +G++   ++  L   
Sbjct: 287 QVESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLALAAMSVGLILGMEWPAMIAGLTD- 345

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD---RD 395
                +        +     +D  + +  +  +   ++   T GR + + G   +    +
Sbjct: 346 --PAAQARLRVVAGQHATTLIDDTYNAAPISTLAALDLLGATPGRRVAILGDMLELGSAE 403

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR-AEIIHGIPG--FIEKGNRIEAIRTA 452
           +     +G+ A  +AD+ +        +    I  A    G+P    +      EAI + 
Sbjct: 404 EEGHRQVGQRAAQVADLLVT-----VGQRAIWIAEAARQAGMPSAHILVCMTNAEAIASV 458

Query: 453 IEMLNKQD-VLVVAGKGHETVHIV 475
              L   D +L+ A +G     IV
Sbjct: 459 RPRLMPGDHILLKASRGMALEEIV 482


>gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Lactobacillus crispatus ST1]
 gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus ST1]
          Length = 455

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 171/476 (35%), Gaps = 45/476 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH FI
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +    +  +        +  ++ VD+    +   A     K    ++ +
Sbjct: 54  ASAINNGASATLWKKGHPNK------PEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSK------RFNVHKTQANFNNEIGVPM-------TILEMKPNT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +         T +G  HI++  ++    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEI-TDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  ++   A     + G++ +   +            T +V   + 
Sbjct: 214 DGEFIFNGDEPLLQERAEKLDQAKA---TFGFRDEDT-VHATGFKSYMHHATFTVNDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+      G  I  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPTANRMEWEK-GDAGESIMS 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           D Y     ++  +L +   +    +GR I V G   +  +    +   +  D  D  I+ 
Sbjct: 329 DIYNSNPTAVRAVLTSFGQVEVKDNGRRIAVLGDMLELGKNSPELHAGL-EDTLDPQIIN 387

Query: 417 DDNPRSEDPEKIRAEII-HGIPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +      + + +   +     P  +     E+ +R+  I      +   D++V+ G
Sbjct: 388 EVYLYGSEMKNLYDALQDKYEPEHLHYYTQEQTDRM--IDDLKNDIKSDDIVVLKG 441


>gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
 gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
          Length = 469

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 170/466 (36%), Gaps = 38/466 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+        +   +  +  VS+DSR +  G +FV + G + DGH FI  A  +G  A
Sbjct: 6   LQEIAEATGGRLIGEAQAVVCAVSTDSRQVAPGELFVPLKGERFDGHDFITTAAGRGVTA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +++ ++        + +    + V++T + L   A+    +    ++AVTG++GK++  
Sbjct: 66  FLMAESWLAAHG---LPAGASAVAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKTTTK 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             + +I  ++G      G  + +              I L   L  L+ +    V     
Sbjct: 123 EMLARILAQTGPGLKTEGNLNNL--------------IGLPLTLFRLTGRERWAVVEIGM 168

Query: 191 SHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S   +  RL  I     G  TN    H++   + +    AK  LF  L  + + A+   D
Sbjct: 169 SEFGEIDRLAEIADPQVGIITNAFPAHLETLGSVEGVARAKGELFLRL-KEGAVAVYNVD 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPG 308
           D     V     +     L+ G +G  +    + ++    +  T+ +   +        G
Sbjct: 228 DPL---VSSCPTHLNVTRLTFGLRGAEVSSASIKSLGKEGESFTLRLPDGEEQVTLKAYG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              +YNAL AA    A+G+   ++   LE+      RF+       G  +  D Y     
Sbjct: 285 RHNIYNALAAAAAAHALGVPGQVIRLGLEEFTPYDKRFQLEEVA--GVTLIDDSYNANPA 342

Query: 368 SLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           S+   L  ++ +  G         +   G   ++  R + GK A  +  + ++       
Sbjct: 343 SMAAALATLKEVAGGARTAAVLGDMLELGLGTEEAHRELGGKAAATVERLYLLG-----G 397

Query: 423 EDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              E  +  +  G+     +      E  R     L   D ++  G
Sbjct: 398 LATEVEKGALEAGLSPERIVHAATHEELARELAAWLEPGDCVLFKG 443


>gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
 gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
          Length = 476

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/485 (19%), Positives = 183/485 (37%), Gaps = 49/485 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + + ++K   +++  +   P       I  +S DSR ++ G  F AI G + DGH F+  
Sbjct: 1   MSEWLWKS-DDMVEAMEGRPFGNLPGGITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTA 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  IVV+         A   S  P++VV++  + L+        +    I+AVTG
Sbjct: 60  AMAAGAGLIVVAEHR----LPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G     +               +  +   +   L+ + +   
Sbjct: 116 SVGKTTTKEALRHVLSEVGKVHASV--------------ASFNNHWGVPLTLARMPADTD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + H   +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 162 YGVFEIGMNHHDEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   K++ + A  AG   +++ G   +    L++V        +T+     +
Sbjct: 221 GYALLNRDDKRFKQLEELAEKAGVEHIVTFGENARSDYRLREVKLHPTCSCMTVKAGTHE 280

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 281 AAVKVGMPGRHIVQNMLAVLGAADLVGADIAKVMMAMATLTAEGGRGARHVLQHPEGTFT 340

Query: 359 YVD--YAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIALDLAD- 411
            +D  Y     S+   L  + +       GR I V G   +  +    +   +A  + D 
Sbjct: 341 LIDESYNANPTSMRAALSLLHSTAPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDA 400

Query: 412 ----IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
               + I   D           + + + +P  I    R    E +   ++ +   DV++V
Sbjct: 401 EVNALFIGGPD----------MSALKNALPVEIHTEYRQSTDELLPLVVKTVRPGDVIMV 450

Query: 465 -AGKG 468
            + KG
Sbjct: 451 KSSKG 455


>gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 451

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 170/446 (38%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + IN VS DSR I  G +F+   G   DGH FI QA+  GA A+         + +    
Sbjct: 24  KTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAVFSEKENKHSEGNQG-- 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRS 140
              PI+ V++T   L   A          ++AVTG++GK++    ++ +        +  
Sbjct: 82  ---PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQ 138

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  + +IG   T+                    L       ++ + +  S     +    
Sbjct: 139 GNYNNEIGMPLTL--------------------LELDEDTEISILEMGMSGFHQIELLSH 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +      TN+G  H+    +++    AK  +   L       I   D+   K  + + 
Sbjct: 179 IAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL-KTNGIFIYDGDEPLLKPHVNQV 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA  +++S+G      +   +  + N + +  ++  K+  +  P+ G   + NA +A  
Sbjct: 238 KNA--KLISIGLNSDSTYTCHMNDVKN-EGIHFTINQKE-HYHLPILGTHNMKNAAIAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G++  ++  ++  + +   R E   +++    I   Y  +  S++  +  +  + 
Sbjct: 294 IGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVM- 352

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I++     +     + +  ++   L D  I        ++   I       +    
Sbjct: 353 KGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVL-YTFGKEASYIYDSGKVFVKEAK 411

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N+ + I+T I  +  +D ++V G
Sbjct: 412 YFDNKDQLIQTLISQVKPEDKVLVKG 437


>gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 511

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/496 (19%), Positives = 197/496 (39%), Gaps = 51/496 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ ++       I  L        +  I ++  +S+ I    +FVAI G   DGH +I
Sbjct: 1   MNLRKILKN-----IEILDTKNFIDFDVDIKKICYNSKFITESSLFVAIKGYITDGHKYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA  +GA   +V            I    P L V+NTR  L+  +   Y    + +  +
Sbjct: 56  LQAYEKGAVCAIVED---------FIDCEIPQLKVENTRIELANVSKNFYDDPSQKLNIV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +T T+GK++ +  + +I   +G  +  IG   T  S     + LTTP  + L      +
Sbjct: 107 GITATNGKTTTSFMLDKIYNDAGYRTGIIGTVYTKYSDITIPSVLTTPESLELQSFFRDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + +  V++E SS   + +R+  I     +F N  R+HID H + + Y+ AK +L +E 
Sbjct: 167 LKKKIEKVTMEVSSSSEELYRVKNIDFNIVAFNNFSREHIDQHGSFEKYYEAKSKLVKE- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV------ 291
             K + AI+  D  + K+++ +      RV++   +        +  +            
Sbjct: 226 ASKNAVAILNMDFDHIKDLLTQTK---ARVITYSLENNDYDF-SISELDLSTGFGKYIFN 281

Query: 292 --------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                      ++ + F+    + G   V N++ A  + +   ID  ++ + +     V 
Sbjct: 282 VNRNIDFNDFVLKKQSFEINLSVAGYSSVMNSVAAIIISLVQNIDVDIIKKSISAFSGVE 341

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RFE +       +I  D+     ++++ L+ +  +      +++   G+R         
Sbjct: 342 RRFEMIYDEK--FKIIDDHYANVKNIDVTLETLSKMKYKNFRMLYAIRGNRGVNLNRETA 399

Query: 404 KIALDLADIA------------IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIR 450
           +                      V+  +  S++  +I   I+      ++  + +E ++ 
Sbjct: 400 EETAKWLKKLDAKTFYATLSKDTVSKKDEVSKEELEIFLNIMEKYNINVKVFDNLENSVY 459

Query: 451 TAIEMLNKQDVLVVAG 466
             ++  +K DV++ AG
Sbjct: 460 EILKTADKGDVVLFAG 475


>gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
          Length = 460

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 162/413 (39%), Gaps = 36/413 (8%)

Query: 1   MKLQDLIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+Q        E+   L    +P  W +  +  V  DSR +  G +FV I+G + DGH 
Sbjct: 1   MKMQ------LSEIARALGTDEYPELWNDISVTSVQFDSRKLSPGSLFVPIMGER-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI QA+  GA A +       +D      ++ P ++V N  + L   A     K    ++
Sbjct: 54  FISQAVTAGAVATLW-----AEDHQERRPADLPSILVKNPLEALQKLAKYYLDKINPKVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GK++       + +       +     T ++F  +  +           L   S
Sbjct: 109 AITGSNGKTTTKDMTAAVLE------AEYNVVKTKANFNNELGVPI-------TILGMSS 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  V  V +     G      + ++      T +G  HI++ +T++   +AKM + + L 
Sbjct: 156 NTEVLVVEMGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRERIADAKMEITDGL- 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEG 297
            ++   +   D+     + +RA +        G +    +    +           +++ 
Sbjct: 215 KEDGCFVFNGDEPL---LEQRAKDLNVEQYRFGLKADNDVSASDIQGTDTSTMFKTNLD- 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++     P+ G++ V NAL A  +     ID     E L    +   R E++ T  +G R
Sbjct: 271 EETTVTIPVLGDYNVTNALAAIAVGHKYHIDLKKEAEALVDFDLTKNRTEWL-TGKKGER 329

Query: 358 IYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           I  D Y     +   +L +   + T GR +VV G   +  +    +   +A  
Sbjct: 330 ILSDVYNSNPTAARAVLDSFANVNTEGRRLVVLGDMLELGENADQMHASLAEK 382


>gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
          Length = 458

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 150/413 (36%), Gaps = 28/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + +    +   +  +  V++D+R +  G +FVA+ G   DGH F  QA+ 
Sbjct: 1   MIATTLQTLADAIGATLI-GADGPVTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQALE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V+   +L         + P L+V +TR  L    + +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVNRRLAL---------DVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I    G   +  G  +                      L          +
Sbjct: 111 KTSVKEMSAAILGLCGNVLYTAGNLNN-------------DIGVPLTLLRLEPQHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +   +  +    NL   H++   +      AK  +F  L P +  AI
Sbjct: 158 ELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLSGVARAKGEIFAGL-PPQGTAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  D    +              S     G   +   V +       T+       + L 
Sbjct: 217 VNVDSNDWESWQHALTEQRVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   + NAL AA L +++G     V + L  L  VPGR   +    +   +   Y  
Sbjct: 277 PLPGRHNIANALAAAALTMSVGASLTQVQQGLAGLQAVPGRLFPIRLGEQQLLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
              S+    + +  +   R++VV      G + +   R +         D  +
Sbjct: 337 NVGSMSAAAEVLGNMPGYRVMVVGDMAELGTEAEACHRRVGQAARAAGIDKVL 389


>gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
 gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
          Length = 497

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 110/501 (21%), Positives = 176/501 (35%), Gaps = 51/501 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +L+Y   P +I Q    P  W   +I  V +DSR +  G +FVA+ G + DGH F+
Sbjct: 2   IRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFL 61

Query: 61  PQAIAQGAEAIVVS---------------------SAYSLQDFSATIRSNTPILVVDNTR 99
              + +GA A +VS                          Q  +        ++ VD+  
Sbjct: 62  ADVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPL 121

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
             L   A          ++ +TG+ GK+S    V  +C R            T+ S    
Sbjct: 122 FALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSR---------RLRTLKS---- 168

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
            R         A  L   +   V  + +   + G  +      +   G  TN+G  H++ 
Sbjct: 169 QRSFNSEVTLPATLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLER 228

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFI 277
             + +A  NAK  L E L P +   I+ ADD     V   A     RVL+ GY       
Sbjct: 229 LGSIEAIANAKAELPESL-PADGWCILNADDH---RVAAMASRTAARVLTYGYAPNADVR 284

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            L  V       ++T+  EG+      PL G    Y AL A    + +G+D   + E L 
Sbjct: 285 LLDVVSHGLYGIELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLR 344

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD--- 393
           +      +        + G   +D  + +  L  I        T GR I V G   +   
Sbjct: 345 E---PGEQLRLRIVPGQHGTTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLGEMLELGA 401

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                   +G  A  +AD+ +       +       A +       +   N   AI    
Sbjct: 402 ASVEGHQQVGAAAATMADVLVAVGRQAHTMAEAARSAGMPA--EQILVCDNNEAAINLLN 459

Query: 454 EMLNKQDVLVVAGKGHETVHI 474
             +   D L++  KG   V +
Sbjct: 460 RYIQPGDHLLI--KGSRGVQM 478


>gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter sp. 638]
 gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterobacter sp. 638]
          Length = 452

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 151/395 (38%), Gaps = 26/395 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q ++  ++ V++D+R I  G +FVA+ G + D H F  QA   GA A++VS    +   
Sbjct: 17  LQGQDLTVDAVTTDTRKITPGCLFVALKGERFDAHDFADQAKENGAGALLVSRKLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P LVV +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQLVVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +                      L          + + A+  G     +D  
Sbjct: 128 TLYTAGNLNN-------------DIGVPMTLLRLTEEHEYAVIELGANHQGEIAWTVDLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A    NL   H++   + +    AK  ++  L P+   AI+ AD+           +
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYGGL-PENGIAIMNADNNDWLNWQNIIGS 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 S            +    +  + T+     D D L PLPG   + NAL AA L 
Sbjct: 234 RKTWRFSPNAANSDFSATNIHVTSHGTEFTLKTPTGDVDVLLPLPGRHNIANALAAAALS 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G     +   L  L  VPGR   +    +   +   Y     S+   ++ +  +   
Sbjct: 294 MAVGATHDAIKTGLLNLKAVPGRLFPIQLAEKKLLLDDSYNANVGSMTAAVQVLSEMPGY 353

Query: 383 RIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           R++VV      G + +     +         D  +
Sbjct: 354 RVMVVGDMAELGDESEACHIQVGDAAKASGIDCVL 388


>gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 453

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 166/453 (36%), Gaps = 44/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  R I  V+ DSR I+   +F+   G   DGH F+ QA+  GA A       SL +  
Sbjct: 20  QYLNRSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLSENI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  PI+ VD+T + L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  EG-----PIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLNTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGMPLTI--------------------LDLDKDTDISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    +++    AK  +   L P     I   D+   K  
Sbjct: 175 LLSTIAEPDIAVITNIGESHMQDLGSREGIAQAKSEITIGLKP-NGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +++   A C  +S+G +     +  V    + + +  ++  +   +  P+ G   + NA 
Sbjct: 234 VEQIQQANC--ISIGLEQGNSLVCSVNEEIDTEGIAFTINHQQ-QYELPILGIHNMKNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    +  +++++ +   R E   T  +   I   Y  +  S++  +  +
Sbjct: 291 IAIAIGQELGLSYETIQHNIKRVKLTGMRMERHETEQQVTVINDAYNASPTSMKAAIDTL 350

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +   +IIV   V   G +       +   +     D  I         +   I     
Sbjct: 351 SNMNGRKIIVLGDVLELGDNSQSMHEEVGSYLQNKQIDQLIT-----FGSEATFIYNTGK 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I    +++  +D +++ G
Sbjct: 406 QYVDEAHHFNDKDKLISHITQIVQPEDKVLIKG 438


>gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
          Length = 480

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 143/406 (35%), Gaps = 24/406 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  K   E++N   I         +  VS+DSR +    +F A+ G K D H ++  A+ 
Sbjct: 4   LQTKKLAEILNGRLIGDET---VTVETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV  A  +         N P +VV +TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGNTAVVVEHACEV---------NVPQIVVADTRLALGHLAQWLKSELNPLTVAITGSSG 111

Query: 126 KSSVASFVQQICQRSGLS-------SFQIGPTSTISSFA----QDNRLTTPSPIYLAKAL 174
           K++V      I Q++           F  G     ++FA                    L
Sbjct: 112 KTTVKEMTASILQQTARKSAVKNTEVFFTGSNHGKANFADAVLFTQGNFNNDIGVPLTLL 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + + A+  G   +    ++       N+   H++   +      AK  ++
Sbjct: 172 RLQPEHRFAVIELGANHAGEIDYTTKLVRPDVALINNVAAAHLEGFGSLDGVARAKGEIY 231

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L  ++  A++ +D  Y     K       +  S          + +    +    T+ 
Sbjct: 232 RGL-SEDGIAVVNSDCHYLSLWDKEIAGHRMQSFSATNPEADYWAENIRMTESGSAFTLH 290

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D   P  G   + NAL A  L + +G +   V   LE+   V GR   +   + 
Sbjct: 291 SPDGSIDISLPYLGAHNIDNALAATALAMNVGAELCDVKAGLEQRSPVKGRLFPIEPCNN 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
              +   Y    +SL+  +  ++   + RI+ V       +  +  
Sbjct: 351 LLLLDDTYNANVDSLKSAIGVLKNYEAFRILAVGDMAELGENSREC 396


>gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 452

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/464 (17%), Positives = 169/464 (36%), Gaps = 46/464 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      P++ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNTLVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
             +       ++ + I      L   D ++V G +G +   +V 
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTNDLKAHDCVLVKGSRGMKLEEVVN 448


>gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
 gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
          Length = 448

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 147/387 (37%), Gaps = 28/387 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +     VS+D+R +  G +FVA+ G   DGH F+ QA  +GA A ++         
Sbjct: 14  LQGEDVVAQGVSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKGASAALLEQ------- 66

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             TI  + P + V + R  L   A+    +    ++AVTG++GK++V   +  +   +G 
Sbjct: 67  --TIEDSLPQVEVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKEMIASVLGGAGS 124

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +             PS  +               + + A+      +    +
Sbjct: 125 VLATQGNLNNDIGVPLTLLGLDPSHRF-------------AVIEMGANQPSEIGYLSCLV 171

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN G  H+D     +    AK  +F+ + P    A++ ADD +       A  
Sbjct: 172 RPQVALITNAGPAHLDGFGDLKGVARAKGEIFQGVNP-GGVAVLNADDPHFSYWRDLAGE 230

Query: 263 AGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V+  G  Q   +    + A     + T+            LPG   V NAL A+ +
Sbjct: 231 --LPVIGFGLTQSAEVTAHHLAAHSEGSRFTLVTPVGKTPVQLSLPGRHNVLNALAASAV 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            IA+G+D   +   L  L  +PGR +          +   Y     SL+  L+ +     
Sbjct: 289 AIALGLDRDQISAALAALPSIPGRLQIRRGAGGMRLLDDTYNANPASLKAALELLAEFPG 348

Query: 382 GRIIVV--FGCGGDRDQGKRPIMGKIA 406
            R +V+  F   G+       +MGK A
Sbjct: 349 ERFLVLGDFAELGEEAAPLHRMMGKQA 375


>gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Halanaerobium
           praevalens DSM 2228]
          Length = 465

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 182/474 (38%), Gaps = 38/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL++++     EL+           + K+ E+  DSR ++ G++F+AI+G  +DGH ++
Sbjct: 4   LKLKEIVAFTKAELL-------QGNLDLKVKEIVIDSRDVKTGFLFIAIIGQNKDGHQYL 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119
            +A+  GA A++V               N  +L V++T K L   A     K  +  ++ 
Sbjct: 57  KEAVKNGASAVIVDRNSPA---IQAAYPNLSVLKVEDTTKALQAIAFNYRHKFDDLKVIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    +  +         +     T  ++                 L     
Sbjct: 114 ITGSAGKTTTKDMIFSVLSE------KYYCLKTEGNYNNQIG-------LPLTLLRLDGR 160

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    + +  S                G  TN+   H++   + +    AK  L + L  
Sbjct: 161 EDFAILEMGMSGLAEIDLLAKIAVPEIGIITNIAAAHLEQLGSLENIAQAKKELIDNLTA 220

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVE 296
            +  AI+  D+ Y+K++     N+  + +  G++       +    ++K +      + +
Sbjct: 221 AD-TAILNYDNQYTKKI---GTNSKAQTIYFGFEKGADARIENYFFNSKTETLKFEFTYQ 276

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K++ F+F   G+  +YN L A  +     +    + + L K      R EF+   ++  
Sbjct: 277 AKNYKFIFNKAGKHNLYNILPALIIAFKYKLKPEEIQKGLLKTKFSSLRMEFIQLKNKAR 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
            I   Y     S++  L  +  I + R I +     +  +       +I L  A   I  
Sbjct: 337 IINDCYNANPLSVKAALDVLEQIKAKRKIAILASMLELGEKSLKKHQQIGLYAAAKKIDL 396

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    P++   + I  +    +     I   N  E I   +  +  +D++++ G
Sbjct: 397 LITIGPKA---QAIATKARTKMKSEQVINLANNKECIDFLLSEIKAEDLILIKG 447


>gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
 gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
          Length = 469

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/499 (18%), Positives = 181/499 (36%), Gaps = 74/499 (14%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ +  +   + +N +     +  +++I  ++ DSR +  G +F+AI G + DGH FI Q
Sbjct: 1   MKGMTLRAMTQAVNGIYHGNGEDYDKEITAITIDSRKVAEGGLFIAIKGERSDGHDFIGQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +GA  ++       ++ S         + V+++ + L   A          ++ +TG
Sbjct: 61  CFEKGAACVISEKELPDEEHS--------YIQVESSLQALKDLALLYRNNLDVKVVGITG 112

Query: 123 TSGKSSVASFV-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + GK+S    +        ++ +  G  + +IG   T+                      
Sbjct: 113 SVGKTSTKETISSVLSEKYRVLKTLGNFNNEIGLPLTV--------------------FR 152

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V  + +  S  G         +      TN+G  H++   T+     AK  +F 
Sbjct: 153 LTEDDEVAVLEMGISDFGEMDRLSKIAQPDICVITNIGLCHLENLGTRDGILKAKTEIFN 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            + P +   I+  DD    ++   +   G R L  G   K                + ++
Sbjct: 213 HMNP-DGIVILNGDDD---KLSTISQVHGKRPLVFGISNKDGVYADNIKSLGLDGTSFTI 268

Query: 296 EGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            G D       FD   P+PG   VYNA+ AA +   +G+ S  +   +  L  + GR   
Sbjct: 269 HGLDTADKYSTFDMTVPVPGHHMVYNAMAAALVGSVLGLSSLEIERGVRNLKTIAGRNNI 328

Query: 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGK 404
           +  N  G  I  D Y     S++  L  + T    ++ +   +F  G +  Q    +   
Sbjct: 329 IKEN--GFTIIDDCYNANPVSMKASLDVLDTAIGRKVAILGSMFELGENEKQMHYDVGMY 386

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK------------GNRIEAIRTA 452
           +     D+ I   D         + A+I  G   +I+               R + +++ 
Sbjct: 387 LGTKDIDVLITAGD---------LAAQIAAGTRAYIDTNYNAHGCEVHDFETRDDMLKSI 437

Query: 453 IEMLNKQDVLVV-AGKGHE 470
             +L   D +++ A  G E
Sbjct: 438 GHILKTGDNILIKASHGME 456


>gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
          Length = 473

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/463 (20%), Positives = 156/463 (33%), Gaps = 46/463 (9%)

Query: 15  INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +    +  +   ER +   V +DSR +  G +FVAI G + DGH F  QA++ GA A++ 
Sbjct: 12  LAGGGLADVPDPERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAEQAVSAGAVAVLA 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASF 132
                            P ++VD+T + L   A       P+  ++ +TG+SGK+S    
Sbjct: 72  DHPV-----------GVPAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSSGKTSTKDL 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             Q+  R G +    G  +T                +L    S             A   
Sbjct: 121 GAQVLARLGPTVAPTGSLNTEVGLPLTVLRADRDTRFLVLEKS-------------ARGV 167

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +         G   N+G  H+    +++A   AK  L E L P +  A++ ADD  
Sbjct: 168 GHIAYLCRIAPPRIGVVLNVGSAHLGEFGSREAIAQAKGELVEAL-PADGTAVLNADDPL 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGE 309
              V+   H    RV++ G                  + +  +   +G        + G 
Sbjct: 227 ---VLGMRHRTRARVVTFGTSADADVRATEIMTDATARPSFRLCFPDGAGLPVALQMHGV 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL  A +   +G+ +  +   L +   +      V T   G  +  D Y     S
Sbjct: 284 HHVSNALAVATVAWVLGLGAEEIAAALREARPLSRWRMEVTTRDDGVTVINDAYNANPES 343

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSED 424
           +   L  +   T+ R I V G   +          ++    A    D  IV        D
Sbjct: 344 MTAALTALAAATAARRIAVLGPMAELGPAAPAAHAEVGETAARVGVDWLIV-----VGAD 398

Query: 425 PEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              I      G           +   A       L   DV+V+
Sbjct: 399 ATPIADGARRGGLAAEAVTVVPDAAAATALLTPALRAGDVVVI 441


>gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 455

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 145/411 (35%), Gaps = 36/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +FV I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  +    +           +L V +T K +   A     K    ++++
Sbjct: 54  GSAIEAGASATLWEAGNPNK------PEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +N +  P  I   K ++ +   
Sbjct: 108 TGSNGKTTTKDMVAAVLAK------RFNVYKTQANF--NNEIGVPMTILEMKPITEIL-- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G        ++      T +G  HI++  ++    +AKM +  + L +
Sbjct: 158 ---VLEMGMDRAGQLHELSQLVRPDVAVITMIGEAHIEFFGSRDKIADAKMEI-TDFLQE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     + +RA        + G+                      + G D 
Sbjct: 214 DGEFIYNGDEPL---LAERAAKLPQDKSTFGFADSDSIHASDLRSTMHHSF-FKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+      G  I  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEK-GDCGEDIMS 328

Query: 361 D-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           D Y     +++ +  +   +     GR I V     +       +   +A 
Sbjct: 329 DIYNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
 gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
          Length = 472

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 182/470 (38%), Gaps = 41/470 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  ELI  +    +       + VS DSR +  G IF  I G+  DGH F  QA A+GA 
Sbjct: 6   NKQELITAIDGVVIGNIPETFHGVSIDSRALAEGDIFFCIKGHHLDGHDFALQAYARGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V + + L+D       + P++VV +  + L         +    I+A+TG+ GK++ 
Sbjct: 66  VLIV-AEHRLRDMEKI---SAPLIVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVE 188
              ++Q+   +G     +               +  +   +   L+ +          + 
Sbjct: 122 KEALKQVLATAGNVHANL--------------ASLNNCWGVPLTLARMPVESDYGIFEIG 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +     +  +  +       T++   H+ + +  +    AK  +FE L  +E  AI+ A
Sbjct: 168 MNHKDEIRPLVKLVCPHVALITHICAGHMGFFKDLEEIAEAKAEIFEGL-DEEGIAILNA 226

Query: 249 DDAYSKEVMKRAHNAGC-RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           D A+   ++++A   G  ++LS G  +      + +  + N   + + + G+D +     
Sbjct: 227 DSAFFSYLVQKAKQCGVKKILSFGETENADYQARDIRLLTNHSSMIVRIGGQDREVQIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVD-Y 362
           PG   V N+L     C A+G+D   ++  L           R+    +N     +  + Y
Sbjct: 287 PGRHIVQNSLGVIAACDAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDESY 346

Query: 363 AHTSNSLEMILK---NIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
                S+   L+          GR I V       G   ++  R ++  I L  A+   +
Sbjct: 347 NANPASMRAALELLATGPVGEKGRRIAVLGDMLELGEYSEKLHRDLIKPIRLSGANPVFL 406

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVV 464
                  E  + + +++   +   +     IE I    +  ++  D+L++
Sbjct: 407 -----FGEAMKSLVSDLSADVK--VHYAENIEKILPLLLTEISPGDLLMI 449


>gi|222825170|dbj|BAH22327.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Wolbachia endosymbiont of Cadra cautella]
          Length = 284

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 114/276 (41%), Positives = 166/276 (60%), Gaps = 9/276 (3%)

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +DYH++   YF AK RLF+E+LPKE  AI+ AD     E++  A   G +V++ G +   
Sbjct: 1   MDYHKSIDEYFEAKKRLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNKVITYGKKNSD 60

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I L K     N Q +TI +  + ++  FP+ G+FQ YN L A G+ I+ G+D   +   +
Sbjct: 61  ITLLKQIPTANGQYLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQRMC--I 118

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           +KL    GR E V T +     +VDYAHT ++L+  L +++   + +I++VFGCGG+RDQ
Sbjct: 119 DKLASPSGRMEKVNTFA-----FVDYAHTPSALKQALLSLKWHFNKKIVLVFGCGGNRDQ 173

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            KR  MGKIA  LA   IVTDDNPR EDP KIR +I+   P  +E G+R +AI   I + 
Sbjct: 174 TKRAEMGKIAQMLAGKVIVTDDNPRDEDPGKIRHDILLHCPDALEIGDRKKAIEKGINIA 233

Query: 457 -NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            ++  +L+VAGKGHE   I+  G+     D ++IRE
Sbjct: 234 HDENMILLVAGKGHERFQIIE-GQSLEFSDVEVIRE 268


>gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 456

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 98/456 (21%), Positives = 166/456 (36%), Gaps = 57/456 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I  VS+DS  I+   +FV I+G + D H FI  AIA GA A++ S    +       
Sbjct: 23  NIPIENVSTDSNSIKENSLFVPIIGERVDAHTFIDSAIANGAVAVLTSEHDEMT------ 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQR 139
             N P + V NT   L               + VTG+ GK++    +        ++ + 
Sbjct: 77  -GNVPYIRVSNTTMALQEIGKYYGKLMIMPKIGVTGSVGKTTTKEMIACALSAGYKVFKT 135

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           SG S+ QIG   T+                    L       +  + +  S  G      
Sbjct: 136 SGNSNSQIGVPLTL--------------------LKMSPDDQIAVIEMGMSMRGEMSRLS 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + ++L     TN+G  HI+  +T+      K  + + +  K+    I  DDA    + K 
Sbjct: 176 ELVELDDAVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDGIVFINGDDA---ILNKH 232

Query: 260 AHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317
                 R+++ G           +   +     T++++ K  +D    + GE  V NALV
Sbjct: 233 KSELRHRIITFGLGNDNDYFATNIKVKNGGVDFTVNIKNKGSYDARLNVLGEHNVRNALV 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A  +    GI+    ++ L     V  R +   T+  G  I  D Y  + +S++  +  +
Sbjct: 293 AIAVAERHGIEVTEAIKALAGYEGVSMRQQI--TDVNGVTIIDDSYNASPDSMKAGIDVL 350

Query: 377 RTI-TSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                +GR I V       G       + + G +A    D  I+            + A 
Sbjct: 351 CDYNNNGRKIAVLADMLELGDKSADYHKEVGGYMAEKKIDELILF---------GTMAAN 401

Query: 432 IIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I  G  G +     R E     ++ L   D ++  G
Sbjct: 402 IGDGFNGSYKLFKKREEINEYLLKNLKSGDAILFKG 437


>gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           loihica PV-4]
 gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella loihica PV-4]
          Length = 456

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 155/413 (37%), Gaps = 29/413 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL   L+   +   +  +++VSSDSR + A  +FVA+ G + D H F  +A+ 
Sbjct: 1   MIPLKLSELAKVLNAKHI-GDDLSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVM 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V     +           P L+V N++K +    + +        +A+TG++G
Sbjct: 60  DGASALLVERELPIA---------APQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   V  I        +  G                         L           
Sbjct: 111 KTSVKEMVATILSTQHQVLYTAG-------------NFNNEVGVPLTLLRLEPQHEYGVF 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++       N+   H++   + +    AK  +F  L  K+  A+
Sbjct: 158 ELGANHLGEINYTSSLVQPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFLHL-AKDGVAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           I ADDA++  + + A +      S       +   ++ A      +  I+   +      
Sbjct: 217 INADDAFADVMRRAAASHTQLSFSSQGNPADVSADELSADALGCYRFRIAYLDEQRTVSL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G  QV NAL A  +C+A+G+    +++ L +L  V GR +      R   I   Y  
Sbjct: 277 PLSGRHQVSNALAATSICLALGLSLDEIVQGLMRLQPVKGRMQPTRL-GRFLLIDDTYNA 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
              S+   +  ++ I   R +V+   G   D      R +  K      D   
Sbjct: 336 NPASVGAAIDWLQEIEGNRCLVLGDLGELGDNASLLHRQLGEKAKQQGIDALY 388


>gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 464

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 140/412 (33%), Gaps = 29/412 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+ + LS          +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIADILSGQLSGNGGVMVETTSTDTRQAVENGLFFALKGEHFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCVAVVVERECEI---------SVPQIVVQDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+  +   ++    T  +   D  +           L          V
Sbjct: 112 KTTVKEMTAKILQKMTVCEDEV--LYTFGNLNNDLGVP-------MTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A   Y  +  K       +  S              + V    +    T+     + +
Sbjct: 223 NQA--FYYPQWQKEIGEHELQSFSYTGSDQDSYADFWAENVELDLSGSHFTLHSPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   V NAL A  L +A+G D   +   LE+   V GR   V  N     I   
Sbjct: 281 INLPYLGAHNVSNALAATSLAMAVGADLNAIKVGLEQRSQVKGRLYPVEVNQHCLLIDDT 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           Y    +S++  +  ++   + RI  V       D             +AD  
Sbjct: 341 YNANVDSMKSAVAVLKNYPAFRIFAVGDMAELGD-----ESAACHQQVADFV 387


>gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 461

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 94/481 (19%), Positives = 192/481 (39%), Gaps = 36/481 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + +L+  +         +     +++ I  +S+DSR ++   +F+ + G K DG  F+  
Sbjct: 1   MMELLIAEIVRATEG-KLIKGSLKDKVI-GISTDSRKVKKDELFIPLKGEKYDGEDFVKD 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA+A++ +    L +          ++ V++T + L   AS    K     +AVTG
Sbjct: 59  AMTKGAKAVLTAR---LDNIEYLRDFPFNVIYVNDTLEALHKIASYYRKKFNIPFVAVTG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    + QI  +      +     T  +F                  +  ++  +
Sbjct: 116 STGKTTTKDMIAQILSK------KYKVLKTEGNF-------NNEIGLPLTIFNLENTHQI 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +  S  G  +   + +K     FTN+G  HI+   +++    AK  L E+   +E+
Sbjct: 163 AVVEMGMSGFGEIRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDF-KEEN 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++ ADD    ++  +  +   R    G +   I    +       + T+  +  + + 
Sbjct: 222 VIVLNADDDMLSKIPLQYSSKYYR---YGIKNGEIKACNIEKGEKGIKYTLKYKNLEKEI 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
              +PG   VYN+L A  + +  G+D   + E L+       R   +       +I  D 
Sbjct: 279 KLSIPGIHNVYNSLAAICVGLEFGVDVDDMAEVLKDFQPGKMRLNII--EKGDIKIIDDA 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y    +S++  L  +R     R I V G     G+        +GK+  D     ++T  
Sbjct: 337 YNANPDSMKAALNVLRDFPGKRKIAVLGDMLELGEYSVEAHREIGKLVADSHIDILITSG 396

Query: 419 NPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG-KGHETVHI 474
           N      + I  E  +       I   N  E ++  + +++ + D+++V G +G +   I
Sbjct: 397 N----TSKYIAEESKVCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQI 452

Query: 475 V 475
           V
Sbjct: 453 V 453


>gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
 gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
          Length = 451

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 82/469 (17%), Positives = 180/469 (38%), Gaps = 40/469 (8%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ N +      ++ +  IN VS DSR I  G +F+   G   DGH FI QA+
Sbjct: 1   MINVTLEQIKNWIDCEIDEKYLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A+          +S  I+   PI+ V++T   L   A          ++AVTG++
Sbjct: 61  NDGAGAVFSEKENR---YSEEIQG--PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           GK++    ++ +        +  G  + +IG   T+                    L   
Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGNYNNEIGMPLTL--------------------LELD 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               ++ + +  S     +   +  +      TN+G  H+    +++    AK  +   L
Sbjct: 156 EDTEISILEMGMSGFHQIELLSNIAQPDIAIITNIGESHMQDLGSREGIAKAKFEITTGL 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I   D+   K  + +  +A  +++S+G      +   +  + N + +  ++  
Sbjct: 216 -KTNGIFIYDGDEPLLKPHVTQVKDA--KLISIGLNSDNTYTCHMNDVKN-EGIHFTINQ 271

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+  +  P+ G   + NA +A  +   +G++  ++  ++  + +   R E   +++    
Sbjct: 272 KE-HYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTV 330

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I   Y  +  S++  +  +  +  GR I++     +     + +  ++   L D  I   
Sbjct: 331 INDAYNASPTSMKAAIDTLSVM-KGRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVL 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                ++   I       +        + + I+T I  +  +D ++V G
Sbjct: 390 -YTFGKEASYIHDSGKIFVKEAKHFDQKEQLIQTLISQVKPEDKVLVKG 437


>gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
 gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
          Length = 458

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 169/479 (35%), Gaps = 51/479 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +   E+ +   + P +W    ++ VS+D+R IQAG ++V + G   +GH F+ +A+ +
Sbjct: 5   TVRQIAEMADGQCLKP-EWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAVQK 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++ +           +         D+T   L   A+R   +    ++ VTG++GK
Sbjct: 64  GAAAVLWAEREGTPPEGVPVVVV------DDTLLALQRLAARYREQLGMKVIGVTGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +               T  +      +           LS      +  V 
Sbjct: 118 TTTKDMIAALLST------HYRVQKTEGNLNNHIGVP-------LTLLSLDEGTEMAVVE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S  G  +      +  A   TN+G  H+    +++    AK+ +   L         
Sbjct: 165 MGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYH 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +   ++ V K            G Q  +              V  ++ G+      P+
Sbjct: 225 GDEPLLTERVPKLPLPRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRT--LFMPV 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  VYNAL A  +    GID   +   L +L V   R E V T      I   Y  + 
Sbjct: 283 LGKHYVYNALAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASP 342

Query: 367 NSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIA-------- 413
            S+   L  ++ ++   + I V G     GD +      +G++    + D          
Sbjct: 343 TSMRAALMLLQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLSH 402

Query: 414 -IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV-AGKGH 469
            I     P  +D             G + + +   A+  A+  +    D++++ A +G 
Sbjct: 403 HIAAAAAPFFDD-------------GRVREFDDKAALAEAVRSVATSDDIVLLKASRGM 448


>gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
 gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
          Length = 458

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/486 (18%), Positives = 179/486 (36%), Gaps = 47/486 (9%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I K   EL   + +      +++  I  VS DSR I+ G +F+   G K DGH F+  A
Sbjct: 1   MINKSLGELAKMIKVENDLSAFQDVAIGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A +                  PI++V+N+ + L   A+    +    ++ +TG+
Sbjct: 61  IKSGAAASLWEKDVP------NPPEGLPIIIVENSLQALQNLATAYRHELGIKVVGITGS 114

Query: 124 SGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +GK++    V  +        +  G  +  IG   TI                    L+ 
Sbjct: 115 NGKTTTKDMVANLLSLKYKVQKTQGNFNSHIGLPLTI--------------------LAL 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                V  + +  S  G  +   +     A   TN+G  H+    +++    AKM +   
Sbjct: 155 EKGTEVAVLEMGMSGFGEIEQLSNIALPDAAIITNIGESHLQDLGSREGIATAKMEIISG 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L  ++   + Y ++   KE + +           G +     L  V    +     ++ E
Sbjct: 215 L-KEDGLFVYYGEEPLLKERIDKDWKFKVETFGKGTENTLYPL-DVKTTDSGSVFKVNAE 272

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D + + P+ GE  V NAL +  +     ++   + E  ++L +   R E +    RG 
Sbjct: 273 -PDTEVMLPVLGEHNVMNALASMLVAKEFDVEYKEMPEAFQQLKLTQMRMEMM-EGKRGE 330

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD---RDQGKRPIMGKIALDLAD 411
           +I  D Y  +  S+   +  +  +   G+ I+V G   +    ++     +G+       
Sbjct: 331 KILNDAYNASPTSMRAAIGLLSGLQGYGKKILVAGDMLELGPNEENYHYEVGQEVQKGKI 390

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHE 470
             + T      +        I  G        ++ E       +L+  ++++  A +G +
Sbjct: 391 DLVFTFGTLARQTARGAAENI--GEKNVFSFDDKQELTEKLESILHGDEIILFKASRGMK 448

Query: 471 TVHIVT 476
              I+ 
Sbjct: 449 LEEIIE 454


>gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 457

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 177/458 (38%), Gaps = 60/458 (13%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ V +D+R ++ G +F A+ G   D + F+ Q  A+ A A+VVS   S       + S
Sbjct: 25  EVSSVCTDTRRLKPGELFFALKGENYDANDFVEQGKAKQAAAVVVSRVLS------AVNS 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-------CQRSG 141
            T +L V ++ K L   A          ++ VTG++GK+S    +  +        + SG
Sbjct: 79  GTAVLQVQDSLKALQALARYNRQLFNIPVIGVTGSNGKTSTKDMIASVLGVRYKTLKTSG 138

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + +IG   T+                    LS  SS     V +     G        
Sbjct: 139 NYNNEIGLPLTL--------------------LSMDSSHQTAVVEMAMRGRGEIDFLCQL 178

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +      T +G  H++   +++    AK  + + + P+   A++  + + ++++     
Sbjct: 179 ARPTGAVITCIGEAHLELLGSRENIAAAKGEMLQHIGPQ-GFALLSGNSSLTRQLAGLTA 237

Query: 262 NAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
               +VL  G + +  I    +    N  + T+       D   P+PG   + N+L A G
Sbjct: 238 G---KVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQEDIFLPIPGRHNIINSLAAVG 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           + + +G+    +   L ++ +   R E +  N  G  +  D Y    +S +  L  +  +
Sbjct: 295 VGLELGLSLPEIKAGLAEVVLTGMRMEIIKIN--GITVINDVYNANPDSSKAALTTLADL 352

Query: 380 TSG-RIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
               R I V G   +   R       +G+ A       +VT          ++  +I  G
Sbjct: 353 GHNRRKIAVLGSMFELGCRAVEGHREVGRAAFAAGTEYLVT--------VGELARQIAVG 404

Query: 436 IPGFIEKGNRI---EAIRTAI----EMLNKQDVLVVAG 466
                   +RI   E  + A     E+  K+DV++V G
Sbjct: 405 AKNAGMPADRIFVYEDKQRACDCLGELCKKEDVILVKG 442


>gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
 gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
          Length = 452

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/455 (19%), Positives = 165/455 (36%), Gaps = 34/455 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + Q  I      +  +  VS+DSR I+A  +F+A+ G + D H F  Q +  GA A++V 
Sbjct: 12  VTQGRIVNATNHDLTLLNVSTDSRKIEASCLFIALKGERFDAHEFAGQVVEAGATALLVD 71

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         N P ++V++TR  +   A  +  +    ++ +TG+SGK+SV     
Sbjct: 72  HQLDV---------NCPQVIVEDTRIAMGQVAGWVRQQSKARVVGLTGSSGKTSVKEMTA 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G          +       P+ L +            + + A+    
Sbjct: 123 SILGQRGNTLYTAG----------NLNNDIGVPLTLFRL---TDEYQFAVIEMGANHPHE 169

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            ++  + +K       NL   H+    + +    AK  +++ L P+E  AI+  D    K
Sbjct: 170 IEYTTNIVKPETALVNNLFGAHLAGFGSPEGVAKAKGEIYQGL-PEEGTAIVNLDSYSDK 228

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                        L+   +    +   +         T+       +   PLPG   + N
Sbjct: 229 WQFGSRQTVWYYSLT---ETADFYPSNIQIKQLTTDFTLHTPVGQVEITLPLPGVHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A+ L I++G     + + +     VPGR   V  +     +   Y     S+   + 
Sbjct: 286 VLAASALAISVGATLEDIKQGIATTKAVPGRLFPVRLSDTKVVLDDTYNANDGSMIAAIN 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +  +   RI+V    G   D          +A   A +  V      SE    I ++  
Sbjct: 346 VLAKMPGYRILVAGDMGELGDYAHECHERVGLAAKQAGLDKVLSVGQLSE----IISQSS 401

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                F  K +    +   I +  + DV+ +  KG
Sbjct: 402 ERGEHFTVKQDL---LTRLIPLAQQNDVVSILVKG 433


>gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
 gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
          Length = 452

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 188/482 (39%), Gaps = 58/482 (12%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  +              VS+D+R IQ G +FV ++G + DGH ++ QA+++GA+A +
Sbjct: 6   QLLKGIITKNNPSAPLSFTGVSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQASL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
            +++  +     ++++   +L V++T   L   A     +    ++AVTG++GK++V   
Sbjct: 66  WATSVPV---PESLKNEDRLLFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGKTTVKDL 122

Query: 133 VQQ-------ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +         I +  G  +  IG   T+ S   + +                        
Sbjct: 123 LYATLAPLGSIYKTQGNYNNHIGLPLTVLSMPANCQTLILE------------------- 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  S  G  +             TN+G  H++   +++    AKM +   L P      
Sbjct: 164 -MGMSGLGEIELLSKLATPDIAVVTNIGESHLEQLGSRENIAKAKMEIALGLKPT-GVLF 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  D+      +K        V +VG+  +  I +  + A  +    TI     +  +  
Sbjct: 222 LDGDEPLLSHYVKEG------VQTVGFSSENKIVIHDLEAREDGYSFTID----EHSYDI 271

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
            L GE  V NA  A  + + +G+    V   LE++ +   R E +    +G  +  D Y 
Sbjct: 272 KLIGEHNVKNAAYAVSVALHLGLSPEQVARSLERVAISKMRLEKI-EGQKGALLLNDAYN 330

Query: 364 HTSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +  S++  +K ++   +    V     ++  G D +   R +  +I   +    +V   
Sbjct: 331 ASPTSMKAAIKTLKAYPNYEKKVAVLGDIYELGIDEEALHRSVADEITEPITTAVLV--- 387

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
               E  + I  E+        F+    + EA      +L+ + V++  A +G E   IV
Sbjct: 388 ---GEKGQWIADEMKRRGSNIPFVSFVEKEEATDYIEGLLDGKTVVLFKASRGLELESIV 444

Query: 476 TN 477
             
Sbjct: 445 DK 446


>gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 540

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 188/488 (38%), Gaps = 71/488 (14%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               + KI+ ++  S+++    +F  + G++ DGH F  +A  +GA A++V         
Sbjct: 30  QALDDIKISGLNYHSQNVSQNELFFCLTGHQYDGHAFAEKAYNKGAVALIVEREIPHIPL 89

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA---SFVQQICQR 139
                     +VV+N+R+ LS  +++ Y +HP   + + G +  +        + QI   
Sbjct: 90  L--------QVVVENSRRALSHLSAKFY-QHPSKSMNMIGITSTNGKTTTTYMIDQILSS 140

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +         +    +++ LTTP  + L + L+ +  + + + ++E SS GL+  R+
Sbjct: 141 NKPTGLLGTVIVKLGEETKESDLTTPESLDLQRYLASMKRKNINYCTMEVSSSGLELERV 200

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +        N+ RDHID H + + YF AK RL EE + ++  A+I  D   + +++  
Sbjct: 201 SAVDYDIAIINNISRDHIDQHGSFENYFAAKQRLVEE-IQEDKRAVINVDCENACKMINY 259

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--------------VEGKDFDFLFP 305
                 +V++   +G    +       +    +                ++   F     
Sbjct: 260 TK---AKVITYSVKGIDATIGIDNLDLSSGSASFDLVINRGFSTLSGKWIKPGRFKIKLK 316

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G   VYNA  AA   + +      +   L K   V  RF+ +    +  +I  D+   
Sbjct: 317 VLGLHNVYNATSAAISTLLLDEPITRIQSELAKFSGVERRFQLIF--DKKFKIIDDHFAN 374

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-----AIVTDDNP 420
             ++E+ ++ +  +    + +++   G R +       K  +            VT  + 
Sbjct: 375 PGNIEVTMETLGKMDFNNLKILYAIRGGRGKTVNEENTKALIKWLKKLNLQEVYVTSSD- 433

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNR--------------------IEAIRTAI--EMLNK 458
                     EI+ GI   +    R                      AI++ I    L  
Sbjct: 434 ----------EIV-GIENKVTMTERDTTLSLLKSAGIRVRYFSQLRSAIKSVIIERHLQT 482

Query: 459 QDVLVVAG 466
            DVL++AG
Sbjct: 483 GDVLLLAG 490


>gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus epidermidis FRI909]
          Length = 451

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 171/445 (38%), Gaps = 39/445 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            IN VS DSR I  G +F+   G   DGH FI QA+  GA A+          +S  I+ 
Sbjct: 25  TINGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGAGAVFSEKENR---YSEEIQG 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141
             PI+ V++T   L   A          ++AVTG++GK++    ++ +        +  G
Sbjct: 82  --PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQG 139

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             + +IG   T+                    L       ++ + +  S     +   + 
Sbjct: 140 NYNNEIGMPLTL--------------------LELDEDTEISILEMGMSGFHQIELLSNI 179

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +      TN+G  H+    +++    AK  +   L       I   D+   K  + +  
Sbjct: 180 AQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL-KTNGIFIYDGDEPLLKPHVTQVK 238

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +A  +++S+G      +   +  + N + +  ++  K+  +  P+ G   + NA +A  +
Sbjct: 239 DA--KLISIGLNSDNTYTCHMNDVKN-EGIHFTINQKE-HYHLPILGTHNMKNAAIAIAI 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G++  ++  ++  + +   R E   +++    I   Y  +  S++  +  +  +  
Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVM-K 353

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR I++     +     + +  ++   L D  I        ++   I       +     
Sbjct: 354 GRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVL-YTFGKEASYIHDSGKIFVKEAKH 412

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
              + + I+T I  +  +D ++V G
Sbjct: 413 FDQKEQLIQTLISQVKPEDKVLVKG 437


>gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
 gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
          Length = 485

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 174/484 (35%), Gaps = 36/484 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L      D       + + P    E  +   + DSR +Q G ++VA+ G + DG  F 
Sbjct: 1   MRLS---ASDIARFTGGMLVVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFC 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA  ++V  +          RS   I+ V++T    +  A+    +   +++A+
Sbjct: 58  INALDAGAACLLVMRSPDEALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++  + V+ +  R+G      G  +                 ++          
Sbjct: 118 TGSSGKTTTKNLVRDVLARAGSVVATQGNQNNELGVPATLLRAEEDTQFV---------- 167

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G  +     ++      TN+G  HI+   ++     AK  +   +   
Sbjct: 168 ---VVEMGMRGRGQIESLCRFVRPDMALVTNVGESHIELLGSRDGIARAKAEIIAGVKAN 224

Query: 241 ESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVC--------------- 283
              A I A D ++  +     A   G  +L     GK                       
Sbjct: 225 TGIAFINASDDFASMLPAYGSADERGVEILFFDGSGKEPASYAAQDGIEVPSTFASDIEL 284

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 + T+            L G   V+NA  AA +   +G+ ++++++ LEK   + 
Sbjct: 285 DEAGCARFTLHTPTGTASVHLALAGLHNVHNATAAAAVGSQVGLSASVIVDALEKATSLD 344

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIM 402
           GR   V T S    +   Y    +S++  L +   +  +GR I V G  G+         
Sbjct: 345 GRGRVVRTASGVVVVDDAYNANPDSMKASLGSFAAMHFAGRHIAVLGDMGELGDTAEEAH 404

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQD 460
            +I   +A + I       S      RA +  G+P    I   +   A+   + ++N  D
Sbjct: 405 ARIGSLVASLPIDLIICVGSLACGIARAAVAAGMPEDAAICVTDASAALDQVVSLVNAGD 464

Query: 461 VLVV 464
            ++V
Sbjct: 465 GILV 468


>gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
 gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 453

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 151/406 (37%), Gaps = 27/406 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +++   +   +  I EV++D+R   AG +F+AI G + D H F+  A+  G   ++VS
Sbjct: 9   LAEITGGTLYGSDGAIAEVTTDTRKATAGNLFIAIKGERFDAHDFVADAVTAGCSGLLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               ++            +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  QRLPVE---------VSQVVVADTRIALGQLAAWVRQRSEARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I ++ G + +  G  +                      L          + + A+    
Sbjct: 120 AILRQCGETLYTAGNLNN-------------DIGVPLTLLRLKPQHQYAVIELGANHQDE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++       NL   H++   +      AK  +F  L P    AII +D     
Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINSDSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                 H       S   Q     +   V         T+     + D   PLPG   + 
Sbjct: 226 HWQSALHGKTVWRFSPDRQADSDFYASGVTLSAQGTHFTLHSPQGEVDVTLPLPGRHNIA 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A+ L +++G   + V + L  L  VPGR   +  ++    +   Y     S+    
Sbjct: 286 NALAASALALSVGAPLSAVCQGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAA 345

Query: 374 KNIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVT 416
           + +  +   R+++V      G +  +  R +   I     D  + T
Sbjct: 346 QVLAEMPGYRVMIVGDMAEMGAEAAECHRQVGNAIRHAAIDKVLST 391


>gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
 gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
          Length = 462

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 183/469 (39%), Gaps = 38/469 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVQ 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      I  ++ ++ V++T K L   A     K    ++A+T
Sbjct: 58  TAIEKGASLCIVS---EINFDKEKIGKSSYVIKVESTNKALLDLAKYYKSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +         +     T  +F                      S  
Sbjct: 115 GSTGKTSTKDLVAAVLSE------KYKVFKTEGNF-------NNEIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+    +   K+
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLE-VTDFFSKD 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDF 300
           S  I+  D+    +++    +   +V  +G + KF    + +       +  +  +G+  
Sbjct: 221 SILIVNGDN----DLLSNFESDKYKVCKIGTEKKFDFNGENLNLEEESIEFDVLEQGETA 276

Query: 301 D--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F   +PG+  V N+L A      + ++   +   ++ L     R + +    +G  I
Sbjct: 277 YKGFNVNVPGKHNVLNSLTAIACGKVLDMNYEDIQTGIKNLKATSMRLDII--KEKGFTI 334

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--V 415
             D Y  + +S++  +  ++ +   R I + G   +          +++    +  I  +
Sbjct: 335 INDCYNASPDSMKAAIDVMKNVKGKRTIALLGSMRELGNEGYRAHREVSEYAKEKGIDLL 394

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 SE  ++   EI      +    N  EA +    ++   D+++V
Sbjct: 395 FSIGEFSEAYKEGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILV 441


>gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 459

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 163/411 (39%), Gaps = 36/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+Q        E+   L +  +P QW E  +  V  DSR +  G +FV I G + DGH 
Sbjct: 1   MKMQ------LSEIARALGVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI QAI  GA A +       +D   T  ++ P + V++    L   A     K    ++
Sbjct: 54  FIEQAIQAGAVATLW-----AKDHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GK++       +         +     T ++F  +  +           L   +
Sbjct: 109 AITGSNGKTTTKDMTAAVLAT------EFNVVKTEANFNNEIGVP-------ITILGMNA 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  V  V +     G      + ++      T +G  HI++ +T+    +AKM + + L 
Sbjct: 156 NTEVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGL- 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEG 297
            KE    IY  D     + +RA        + G + +  +    V     +    I+++ 
Sbjct: 215 -KEDGCFIYDGDE--PLLAERAKAVDVEQRTFGMKNENDVFASDVAGTDTETSFKINLD- 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   P+ GE+ V NAL A  +     +  A     L   ++   R E++    +G R
Sbjct: 271 PEVEVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNRTEWLK-GRQGER 329

Query: 358 IYVD-YAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           I  D Y     + + +L     T  +GR  VV G   +  +    +  ++A
Sbjct: 330 ILSDVYNSNPTAAKAVLNSFAHTKKTGRRFVVLGDMLELGENADQMHAQLA 380


>gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
 gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
          Length = 458

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 168/479 (35%), Gaps = 51/479 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +   E+ +   + P +W    ++ VS+D+R IQAG ++V + G   +GH F+ +A  +
Sbjct: 5   TVRQIAEMADGQCLKP-EWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQK 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++ +           +         D+T   L   A+R   +    ++ VTG++GK
Sbjct: 64  GAVAVLWAEREGTPPEGVPVVVV------DDTLLALQRLAARYREQLGLKVIGVTGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +               T  +      +           LS      +  V 
Sbjct: 118 TTTKDMIAALLST------HYRVQKTEGNLNNHIGVP-------LTLLSLDEGTEMAVVE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S  G  +      +  A   TN+G  H+    +++    AK+ +   L         
Sbjct: 165 MGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYH 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +   ++ V K +          G Q  +              V  ++ G+      P+
Sbjct: 225 GDEPLLTERVPKLSLPRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRT--LFMPV 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  VYNAL A  +    GID   +   L +L V   R E V T      I   Y  + 
Sbjct: 283 LGKHHVYNALAAIAVARFFGIDWEGIDAALSRLQVTRMRTEVVKTKYGFTVINDAYNASP 342

Query: 367 NSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVTD---- 417
            S+   L  ++ ++   + I V G     GD +      +G++    + D          
Sbjct: 343 TSMRAALMLLQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLAH 402

Query: 418 -----DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV-AGKGH 469
                  P  +D             G + + +   A+  A+  +    D++++ A +G 
Sbjct: 403 HIAAAAAPFFDD-------------GRVREFDDKAALAEAVRSVATSDDIVLLKASRGM 448


>gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
 gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
          Length = 457

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 172/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA+AQG+ A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQAVAQGSVAVV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S            P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  +
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNI 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   I L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYINLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVSG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
          Length = 455

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 79/475 (16%), Positives = 169/475 (35%), Gaps = 43/475 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDDQTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VD+    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVPM-------TILEMKPNT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +         T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGTRDKIADAKMEI-TDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+         + G++ +   +            T ++   + 
Sbjct: 214 DGEFIFNGDEPLLQERAKKLDQVKA---TFGFRDEDT-VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     G  I V G   +  +    +   +  D  D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGKSSPALHAGL-SDTLDPQIINE 388

Query: 418 DNPRSEDPEKIRAEII-HGIPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 + + +   +     P  +     ++ +R+  I      +   D++V+ G
Sbjct: 389 VYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRM--IDDLKNDIKPDDIVVLKG 441


>gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
 gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
          Length = 452

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 164/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNRIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 NTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKG 437


>gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
          Length = 466

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 94/461 (20%), Positives = 161/461 (34%), Gaps = 33/461 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              +     V  DSR ++ G +FVA+ G + DGH F+  A+ +GA   +V + ++ +   
Sbjct: 19  AAPDLLFRRVWHDSRTVEPGDLFVALRGERHDGHDFVADAVRRGAAGALVEARWAEE--- 75

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P++VVD+T   L   AS         + AVTG+ GK+S    +  +  +    
Sbjct: 76  -LANLGIPLIVVDDTLAALLRLASYWRRLFAVPVAAVTGSVGKTSTKEAIASVLAQRFQV 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                  +T    A D     P+   +                 EA   G  +      +
Sbjct: 135 VRSRASFNTDVGIALDLLTIDPNTDVVVLEFG------------EAYRLGEVRELCALAE 182

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN+   H+    T +    +   L E L P +  A++  DD     V   A   
Sbjct: 183 PRIGVVTNVSYAHLARMGTIERIAQSIAELPESL-PADGVAVLNGDD---FRVRLMAERT 238

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGL 321
             RVL  G         +         ++  +   G+      PL G+  V++AL A  +
Sbjct: 239 PARVLLYGLSPDCHVRAEEIESRGLDGISFDLVAFGERNRVRLPLLGQHSVHHALAAIAV 298

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD-YAHTSNSLEMILKNIRTI 379
              +G+    +   L   H    +   +      G  +  D Y  +  S    L  +  I
Sbjct: 299 GYELGLTLEEM---LPGFHDPRVQVRLLTVPGINGATLLDDTYNASPASCMAALSLLAEI 355

Query: 380 TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            + R I VFG   +    ++    ++G+ A  + D         R      I A +    
Sbjct: 356 PAQRRIAVFGDMYELGWYEEEGHRMVGRRAAAVVDRLFTLGPRARWIAEAAIEAGLAP-- 413

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                  +R E +    E L   D +++ G +G     IV 
Sbjct: 414 ERVWATDDRRELVAVLRETLRPGDFVLIKGARGMRMEEIVE 454


>gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 462

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 181/470 (38%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+
Sbjct: 4   IKLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA   +VS    +      +   + I+ V+N  K L   A     K    ++A+
Sbjct: 57  EMAIEKGAALCIVS---EINFSEGKVGKASYIIKVENANKALLDLAKYYRSKLDIKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F                      S 
Sbjct: 114 TGSTGKTSTKDLVGAVLAE------KYKVFKTEGNF-------NNEIGLPLMIFKLDKSY 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  +      +  +  K      TN+G  HI+   +++    AK+ +  +   K
Sbjct: 161 DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEI-TDFFCK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +S  II  DD    +++    +   +V  +G   KF        +  +  +  I  +GK 
Sbjct: 220 DSILIINGDD----DLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKT 275

Query: 300 F--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F   +PG+  V N+L A      + I+   +   ++ L     R + V    +G  
Sbjct: 276 AYKCFGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
           I  D Y  + +S++  +  ++ I   R I + G   +          +++    +  I  
Sbjct: 334 IINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 394 LFSIGEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 495

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 158/398 (39%), Gaps = 30/398 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRALSNGSLYVALRGERVDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+AQGA  ++V                 P +VV NT   L+  A+ +       ++A+
Sbjct: 55  ADALAQGASGLLVER--------LLPTLGVPQVVVQNTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G         +T+ +   +       P+ +   ++     
Sbjct: 107 TGSNGKTSVKALLLAILTEAGRVDG-----TTVYATPGNRNNEIGLPLAV---IAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V    + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DVAIYEMGAGKPGDIAYLTDIARPQVALVNNIAPAHLERLGSLLGVAQTKGAIYAAL-PS 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++ H       RVL  G Q    I  +++    +  Q T+   
Sbjct: 218 DGVAVINADDAFGAWFEQQLHAQPVPGRRVLRYGLQASADIRARQLRLQADGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L +   V GR   +     GG
Sbjct: 278 QGEAQVTLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQARPVAGRQ--IAHRLPGG 335

Query: 357 RIYVDYAHTSNSLE-MILKNIRTITSGRIIVVFGCGGD 393
            + VD ++ +N        +      G   +V G   +
Sbjct: 336 AVLVDDSYNANPGSLDAAIDALAAAPGDGWLVLGDMRE 373


>gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103]
 gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103]
          Length = 452

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 161/405 (39%), Gaps = 26/405 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +++   +   +  +N+V++D+R + AG +FVAIVG + D H F   AIA+GA+A++VS
Sbjct: 9   LAEIASGTLHGDDLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGAKALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  + P +VV +TR      A+ +  +    ++A+TG+SGK+SV     
Sbjct: 69  K---------HLPVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I ++ G +    G          +       P+ L   L          + + A+  G 
Sbjct: 120 SILRQCGETLHTAG----------NLNNDFGVPMTL---LRLTPEHQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++  A    NL   H++   + +    AK  +F  L P    AI+ AD     
Sbjct: 167 IAYTTDLVRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIFYGL-PARGTAILNADSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S            +    +     +     + D + PLPG   + N
Sbjct: 226 RWQENLHGKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMRTPRGEADIILPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +++    + V   L+ L  VPGR   V  +     +   Y     S+    +
Sbjct: 286 ALAAAALALSVDAPLSAVQAGLKSLQSVPGRLFPVRLSEHQLILDDSYNANVGSMVAAAQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +   R++VV      G + ++  R +         D  + T
Sbjct: 346 VLSEMPGYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLST 390


>gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae Sd197]
 gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
 gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
          Length = 452

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 154/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     + G       D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGGAAKAAGIDRVL 388


>gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 452

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 164/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKG 437


>gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 452

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 165/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I   I  L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLINDLKAHDRVLVKG 437


>gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
 gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
          Length = 475

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 172/461 (37%), Gaps = 24/461 (5%)

Query: 13  ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  +    +Q   +  I  VS+D+R + AG +++ + G   DGH F+  A+ +GA  +
Sbjct: 13  ELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAVKKGAGGV 72

Query: 72  VVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V   ++    + + +++  + ++VD+T K L   A          ++A+TG+SGK++  
Sbjct: 73  LVDVHHAFILETGSKKTDGCLKILVDDTLKALGDLARFWRRAVGRPVIAITGSSGKTTTK 132

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                I +++       G  + +                    L       +  V +  +
Sbjct: 133 EMTAAILEQTFSVLKTEGNLNNLIGLPLT-------------LLRMHRGHDLALVELGTN 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           + G  +   +  +   G  TN+G  H++  +T +     K  L+   +PK   A+  ADD
Sbjct: 180 ARGEIKRLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLY-GTMPKSGLAVFNADD 238

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + +R+         +  +             + Q  T++   +         G  
Sbjct: 239 EAMAPL-RRSWQGKMLTYGITSRADMTASDIAKWGESGQSFTLNAGSESTVVHLSAFGMH 297

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +YNAL AA L  A GI    + + L   H V  RFE     +    +   Y     S+ 
Sbjct: 298 NIYNALAAAALSRAAGIGINEISQGLRNFHPVAARFEVHFLPNGAFLVDDTYNANPASVR 357

Query: 371 MILKNIRTITSGRIIVV-----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             LK I+T+      VV        G   ++    +  + A    D   +     RS   
Sbjct: 358 EALKTIQTLKGNHRSVVVLADMLELGDQAERLHETVGSEAAATDVDRLFLKGSLSRSTAA 417

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I+  +       +   +  E +   +  +   D ++V G
Sbjct: 418 GAIKGGMTE--ERILFFEDPEEILDDVLSFVEAGDWILVKG 456


>gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
 gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
          Length = 456

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 175/460 (38%), Gaps = 30/460 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             + +N   I  +   +  I  V +D+R+I  G +F+ IVG + +GH F+ QAI +GA+A
Sbjct: 9   MAKWLNDADIINIS-EDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRGAKA 67

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            + S+        A    + P++ V++T + L   A          ++AVTG++GK++  
Sbjct: 68  ALWSTK------EADAPEDLPLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTK 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +C+             T  +F     +           L+         + +  S
Sbjct: 122 DMMAAVCETL------WKVQKTQGNFNNHIGMP-------LTILALQKDTEAVILEMGMS 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  +      +  A   TN+G  H+    +++    AKM + + L    +P + + D+
Sbjct: 169 GFGEIELLSQIAEPDAAIITNIGESHLQDLGSRENIAKAKMEIAKGL-KDGAPLVFHGDE 227

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
                + +++ +    +L+ G++    +  +   +H       +V G +   +   + G 
Sbjct: 228 PLLTPLTEQSPHP---LLTFGHRDTNRYFPQ-EIVHEPNGTRFNVGGNEIGSYFITVLGA 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NA+         GI+   +    + + +   R E + + + G  I  D Y  +  S
Sbjct: 284 HNVLNAIAVIATARWFGIEDHKINLGFQSVQMTGMRLEQL-SGADGVTIINDAYNASPTS 342

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           ++  L+ ++ +   +   V             +       + D A +T         E I
Sbjct: 343 VKAALELVQDMKGHQNKYVVLGDMLELGEAEEMFHFDTGAMIDPAAITGVFTYGTLSEHI 402

Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   +        +   ++   I     +L   D++++ G
Sbjct: 403 QKGALRRFEEERAMHFSDKPALISHLKSVLKSDDLVLIKG 442


>gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 457

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 173/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQTKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S          + P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  +
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNI 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGAKLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   I L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYINLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVSG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
 gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
          Length = 470

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 180/473 (38%), Gaps = 45/473 (9%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G          +       P  +   L+      V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVT 416
             +  +L+ +LK    +  +     +V     +       +  + A     D      + 
Sbjct: 348 NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLY 407

Query: 417 DD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
            D      E  E    +      G +   +  E++ TA +  +   + ++V G
Sbjct: 408 GDAMKAFGEVAESKIGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 454


>gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
 gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
          Length = 463

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 181/478 (37%), Gaps = 37/478 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL +  S   +  ++  + +VS+D+R      +F A+ G   D H ++ QA+ 
Sbjct: 1   MIKLSTKELADIFSARLIGAKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P L+V +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCSAVVVERECDV---------DVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q+  +         T  +F  D  +           L +        +
Sbjct: 112 KTTVKEMTASILQK--VVQDPDAVLFTQGNFNNDIGVP-------LTLLRFEPKHQFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +D ++       N+   H++   + +    AK  +++ L  K    +
Sbjct: 163 ELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYQGLNGKGIAIM 222

Query: 246 IYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFL 303
            Y     + K   ++  +A  R+ S   +    + +++       Q  +   E  + +  
Sbjct: 223 EYEHSVLWKKYWHEQIGDAETRLFSTQGKKSDYYAQEIRLTETGSQFKLCCTEHGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G   V NA+ AA L + +G+    +   LEK   V GR   +        +   Y 
Sbjct: 283 LPYLGLHNVSNAVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPNLLLLDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPR 421
              +SL+  +  +R       I   G   +          ++A    +A++ +V      
Sbjct: 343 ANVSSLKSAIDVLRQYDKFFRIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVS---- 398

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-----EMLNKQDVLVVAGKGHETVHI 474
                 + ++   G+       ++ E +   I     ++ +++ VL+V  KG   + +
Sbjct: 399 FGTQSAVISDACDGV----HFSDKTELVNYIIPIIQQKLASQKVVLLV--KGARCMQM 450


>gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
 gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
          Length = 452

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 98/466 (21%), Positives = 184/466 (39%), Gaps = 46/466 (9%)

Query: 6   LIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I ++ P +++           ++ IN++S+DSR IQ   IF+A+ G+K DGH F+ + I
Sbjct: 1   MILREIPTILSGTFQKISQTLSDKSINKISTDSRTIQENDIFIALQGDKFDGHRFVDEVI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A++V+   S++          P +VV +T       A+         I+ +TG+ 
Sbjct: 61  DKGAIALIVNHEVSVKS-----TKEIPQIVVKDTLIAYQEIANWWRNHVKIPIIGITGSV 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +           G    +     +       P  L   L   ++     
Sbjct: 116 GKTTTKEIIAAVL----------GVYGNVHKTQANYNNEIGVPKTL---LGLTTNHNYAV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G             G  TN+G  HI    ++QA   AK  L  E +P+ S A
Sbjct: 163 IEMAMRGKGEIALLSQIACPTIGIITNVGTAHIGRLGSRQAIAEAKCELLAE-MPENSVA 221

Query: 245 IIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+  DD   + +++ A      + ++ G +G  I  + +          + VEG DF   
Sbjct: 222 ILNHDD---QRLVETAATVWQGKTITYGLEGGDITGELLENQ------ILRVEGMDFP-- 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG     N L A  +   + +D   ++E +  +++  GR +     +    +   Y 
Sbjct: 271 LPLPGRHNALNYLAALAVTKELNLDWTFLMEGV-TVNLPQGRSQQYSLKNDVILLDETYN 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA-DIAIVTDDN 419
               S++  L+ ++     R + V G      D        +G+ A  LA D   +  D+
Sbjct: 330 AGLESMKAALQLLKDTPGTRHLAVLGTMKELADASAELHREVGETAEKLAIDALFILVDD 389

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
           P+S         I  G+     +      + I+   E++   D ++
Sbjct: 390 PQS-------QAITKGVTTIETQSFPTHEQLIQRLREVIQPGDRIL 428


>gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           schoenbuchensis R1]
          Length = 473

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 176/473 (37%), Gaps = 47/473 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L++ ++   +       + +S DSR +  G IF  I GN  DGH F  QA A+GA 
Sbjct: 6   DKQTLLSVMNGLSVGCLPETFSGISIDSRSLIEGDIFFCIKGNSLDGHDFAAQAYAKGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV    +    +       P++VV +  K L   A     +    I+AVTG+ GK++ 
Sbjct: 66  VLVV----AQNRLAEMKMLAAPLIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q     G     +G              +  +   +   L+ + +     +    
Sbjct: 122 KEALKQALGTVGRVYANLG--------------SFNNCWGVPLTLARMPADSDYGIFEIG 167

Query: 190 SSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H    +  +  ++      T++   HI + +  +   +AK  +FE L   E  A++ A
Sbjct: 168 MNHKDEIRPLVKLVRPHVALITHIAAGHIGFFKNLEEIADAKAEIFEGL-DDEGVALLNA 226

Query: 249 DDAYSKEVMKRAHNAGC-RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           D  +   ++++A   G  ++LS G  QG     K++  + +   +T+    +D       
Sbjct: 227 DSHFFSRLVQKAEQCGVKKILSFGESQGANYQAKEIHLLTDCSCMTMHFSNQDITVKIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRGGRIYVD-Y 362
           PG   V N L    +C  +G D   V   L           R+     N     +  + Y
Sbjct: 287 PGRHIVQNILGVLAVCDVVGADLTRVSLALNCFSLPKGRGNRYRLSLPNGGEFHLIDESY 346

Query: 363 AHTSNSLEMI---LKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
                S+      L      T GR I +       G   ++  R ++  I +  A+   +
Sbjct: 347 NANPASMRAALDLLAAGPVGTRGRKIAILGDMLELGVYSEKLHRDLVKPICISGANPVFL 406

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----IEMLNKQDVLVV 464
                +      +  E+   I  +       E I       ++ +++ D++++
Sbjct: 407 VGKAMKF-----LADELSTYIKVYYS-----EYIEELLPLILQEISEGDLIMI 449


>gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
          Length = 452

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 164/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      P++ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTSDLKAHDRILVKG 437


>gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
 gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
          Length = 452

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 165/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   T+                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTV--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I   I  L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLINDLKAHDRVLVKG 437


>gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
 gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
          Length = 473

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 90/470 (19%), Positives = 177/470 (37%), Gaps = 41/470 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI  +  + +       + +S DSR +  G IF  I G+  DGH F  QA  +GA 
Sbjct: 6   DKQALITAIDGYAIGEIPETFSGISIDSRTLIEGDIFFCIKGHHLDGHDFAVQAYERGAA 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V    +    +   + + P++VV +  + L   A     +    I+AVTG+ GK++ 
Sbjct: 66  VLIV----AENRLADMEKISAPLIVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVE 188
              ++Q+    G                  N  +  +   +   L+ +          + 
Sbjct: 122 KEVLKQVLATVGKVHA--------------NSASLNNHWGVPLTLARMPVESNYGVFEIG 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +     +  +  +       T++   H+ + +  +   +AK  +FE L  +E  A++ A
Sbjct: 168 MNHKDEIRPLVKLVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEGL-DEEGIAVLNA 226

Query: 249 DDAYSKEVMKRAHNAGC-RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD +   ++++A      R+LS G  +      K +  + +   + +S+ G+D       
Sbjct: 227 DDDFFPYLVQKAKQCSVKRILSFGETKNSDYQAKDIRLLTDYSSMIVSISGQDRAMKIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF----VGTNSRGGRIYVDY 362
           PG   + N+L     C AIG+D   VL  L       GR       + +      I   Y
Sbjct: 287 PGRHIIQNSLAVIAACDAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESY 346

Query: 363 AHTSNSLEMILKNIRTIT---SGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
                S+   L  +        GR I +       G   ++  R ++  + L  A+   +
Sbjct: 347 NANPASMRAALDLLAIGPVGVEGRRIAILGDMLELGAYSEKLHRDLVKPVYLSGANPVFL 406

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV 464
                  E  + +  ++   +   +     IE I   I   ++  D+L++
Sbjct: 407 -----FGEAMKFLATDLAAYVK--VHYAENIEKILPLILAEISNGDLLMI 449


>gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 455

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 149/418 (35%), Gaps = 36/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L        +  I+ V+ DSR I    +FV + G + DGH FI
Sbjct: 1   MKMQ------LAEIAKALDTTIEGNSDPVISSVAFDSRKINENALFVPLKGER-DGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A +    +  +        N P++ VD+T   +   A     K    ++ +
Sbjct: 54  NSAIANGAVATLWEKGHPNK------PDNFPVVEVDDTLAAMQELAKYYLNKVNPAVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------MTILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H    +K      T +G  HI++  ++    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSSLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     + +RA        + G+  +   +  +         +      + 
Sbjct: 214 DGEFIYNGDEPL---LRQRAEKISQAKSTFGFNDQDT-IYALEFKSYMHHASFVTSSSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R ++      G  I  
Sbjct: 270 KFSIPMIGKHNVSNAMAAICVGHHFGETDDEIAASLSNFTPTANRMQWRK-GDVGEDIMD 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           D Y     + + +L +   +     GR I V G   +       +   +A  L  + I
Sbjct: 329 DIYNSNPTAAKAVLTSFGQVEVPEGGRRIAVLGDMLELGSASAALHASLAEKLDPLVI 386


>gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
 gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
          Length = 457

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 171/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S          + P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK    K +         T+     + +   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G     V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  ++   + RI+ V       +      R +   I L   D+           +   + 
Sbjct: 346 IDVLKGYDAFRILCVGDMKELGENSLAIHREVGQYINLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVSG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 455

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 79/475 (16%), Positives = 169/475 (35%), Gaps = 43/475 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDDQTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VD+    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVPM-------TILEMKPNT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +         T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGTRDKIADAKMEI-TDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+         + G++ +   +            T ++   + 
Sbjct: 214 DGEFIFNGDEPLLQERAKKLDQVKA---TFGFRDEDT-VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     G  I V G   +  +    +   +  D  D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGKNSPALHAGL-SDTLDPQIINE 388

Query: 418 DNPRSEDPEKIRAEII-HGIPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 + + +   +     P  +     ++ +R+  I      +   D++V+ G
Sbjct: 389 VYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRM--IDDLKNDIKPDDIVVLKG 441


>gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes FSL R2-561]
          Length = 470

 Score =  222 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 180/473 (38%), Gaps = 45/473 (9%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G          +       P  +   L+      V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVT 416
             +  +L+ +LK    +  +     +V     +       +  + A     D      + 
Sbjct: 348 NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLY 407

Query: 417 DD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
            D      E  E    +      G +   +  E++ TA +  +   + ++V G
Sbjct: 408 GDAMKAFGEVAESKIGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 454


>gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 470

 Score =  222 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 180/473 (38%), Gaps = 45/473 (9%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G          +       P  +   L+      V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVT 416
             +  +L+ +LK    +  +     +V     +       +  + A     D      + 
Sbjct: 348 NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLY 407

Query: 417 DD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
            D      E  E    +      G +   +  E++ TA +  +   + ++V G
Sbjct: 408 GDAMKAFGEVAESKIGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 454


>gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 155-74]
          Length = 452

 Score =  222 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 169/473 (35%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA--------- 413
             S+   ++ +  +   R++VV      G + +     +         D           
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHA 396

Query: 414 IVTD--DNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
           I T         D   +   +   I        + KG+R  A+  A+  L + 
Sbjct: 397 ISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEAVRALQEN 449


>gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 460

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 143/408 (35%), Gaps = 19/408 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     +L   L    +      +  +S+D+R   A  +F A+ G   D H ++ +A+A
Sbjct: 1   MLKLTTKQLATILQAELVGEANVVVENISTDTRQRVASSLFFALKGEHFDAHNYLDKAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV  A +          + P L+V +TR  L   A  +  +     LA+TG+SG
Sbjct: 61  QGANALVVERADTQI--------SVPQLIVKDTRIALGELAKWVKQQVNPRTLAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +           T  +F  D  +           L          +
Sbjct: 113 KTTVKEMTASILQSA---VGVEQVLFTQGNFNNDIGVP-------LTLLRLTEQHQFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++       N+   H++   + +    AK  ++  L P +  AI
Sbjct: 163 ELGANHQGEIAYTTGLVQPNVALVNNVAAAHLEGFGSLEGVATAKGEIYRGLQP-DGVAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  +  Y     +       +  +        +   V          +           P
Sbjct: 222 INKEHDYRSTWAQDIGAHRVQYFAYQDNTADFYADNVIFHEAGSTFDLCTPQGKTTIHLP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A+ L + +G   A + + LE    V GR   V        +   Y   
Sbjct: 282 YLGEHNVKNALAASALAMNVGATLAQIKQGLEVRTQVKGRLYPVQPCDNLLLLDDTYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            +SL+  ++ ++   + RI+VV       +  +           A   
Sbjct: 342 VDSLQSAIRVLQKYDAFRILVVGDMAELGENSQICHQQVAECAKAAKL 389


>gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2866]
          Length = 457

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 171/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA+AQGA  +V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVAQGAVTVV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S            P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   + L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVNLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
 gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
          Length = 457

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 155/410 (37%), Gaps = 28/410 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           DF  L N L+    Q   +++  +++D+R +  G +F+A+ G   DGH FI +A  +GA 
Sbjct: 2   DFDWLANVLT-TDYQGDNQQVLNINTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAI 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V     +         +    +V++TR  L    + +  +     +A+TG+ GK++V
Sbjct: 61  GVIVDHKVDV---------DIAQFIVNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTV 111

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 I    G         +T  +F  D        I +   L  L  Q    V    
Sbjct: 112 KEMCAAILSVHGD------VLATKGNFNND--------IGVPLTLLRLEPQHRFAVIELG 157

Query: 190 SSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ++H G   +     K       N+   H++   +      AK  +F+ L  +   AII  
Sbjct: 158 ANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGSLMGVAKAKGEIFDGL-KENGVAIINC 216

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D  +S+  + +      +  S   +            + +   T+  + K       LPG
Sbjct: 217 DSEFSQYWLDKLEGRNIKRFSTSEKLDIWAEDISLDANARASFTLCTKQKKVPVTLALPG 276

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL+AA L   + +    +   L  +  V GR   +  +     +   Y     S
Sbjct: 277 KHNISNALIAAALTSELDVTLDDIAHALATMGDVKGRVNLIEVSDMLTVVDDTYNANVKS 336

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVT 416
           ++  +  +  +   RI+ +   G   +  +     +G+ AL+     + T
Sbjct: 337 VKAAIDLLSDMQGHRILALGDMGELGEDARKYHQEVGEYALEKGIDELFT 386


>gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
 gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
          Length = 470

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 154/407 (37%), Gaps = 32/407 (7%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                  + P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVP------NPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +                              V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +L+ +LK    +  +     +V     +       +  + A 
Sbjct: 348 NSSPTALKTVLKTFMHMNSSGKPKYLVLADMLELGDLSTKLHQESAE 394


>gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes Finland 1988]
          Length = 466

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 180/473 (38%), Gaps = 45/473 (9%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 10  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 69

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 70  EMGAVATFWQKNVP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G          +       P  +   L+      V  
Sbjct: 124 GKTTTKDIMAAIVETTYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAV 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 171 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 230

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 231 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 284

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 285 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 343

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVT 416
             +  +L+ +LK    +  +     +V     +       +  + A     D      + 
Sbjct: 344 NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLY 403

Query: 417 DD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
            D      E  E    +      G +   +  E++ TA +  +   + ++V G
Sbjct: 404 GDAMKAFGEVAESKIGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 450


>gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Staphylococcus aureus 04-02981]
 gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 452

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 164/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 GTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKG 437


>gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412]
 gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
 gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412]
 gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
          Length = 452

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 96/473 (20%), Positives = 169/473 (35%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA--------- 413
             S+   ++ +  +   R++VV      G + +     +         D           
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHA 396

Query: 414 IVTD--DNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
           I T         D   + A I   I        + KG+R  A+   +  L + 
Sbjct: 397 ISTASGVGEHFADKTALIARIKSLIAEQQVITILVKGSRSAAMEEVVRALQEN 449


>gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
 gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
          Length = 452

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 152/403 (37%), Gaps = 26/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIYVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIA 406
             S+   ++ +  +   R++VV          +     +G+ A
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHAQVGEAA 379


>gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes str. Scott A]
          Length = 470

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 154/407 (37%), Gaps = 32/407 (7%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                  + P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVP------NPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +                              V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +L+ +LK    +  +     +V     +       +  + A 
Sbjct: 348 NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAE 394


>gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
 gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
          Length = 509

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 208/490 (42%), Gaps = 41/490 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++       I  + I      + +I+ +S +S +I+A  +FVAI G   DGH +I
Sbjct: 1   MKLREILKD-----IEIIDIRGKIDLDTEISNMSYNSINIEASGLFVAIKGKITDGHKYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A   GA   VV     +           P + VDNTRK L+  A   Y    +   ++
Sbjct: 56  KNAKNHGAIVAVVEDFKEVY---------IPQIKVDNTRKSLADLAKNFYKDPSKDLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +T T+GK++ +  +++I   + +++  IG   T  +     + LTTP  + L K    +
Sbjct: 107 GITATNGKTTTSFMLKKILSENKINTGIIGTVYTKFADVNIPSILTTPESLELQKYFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + ++HV +E SS      R++ I     SF NL R+HID H + + YF  K ++    
Sbjct: 167 LDKNISHVVMEVSSSAQQMLRVNNIDFDIVSFGNLSREHIDQHGSFENYFRDKSKIILN- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV------ 291
             K S A++  D+ Y   + ++   +   +        F   K   +    + +      
Sbjct: 226 AKKGSFALLNMDNEYIASLKEKTKASVLTISMENLDSDFGISKLDLSTGFGKFMFHVNRD 285

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              I+++ + F+      G   V N ++A  L + + +D  ++L  LE    V  RFE +
Sbjct: 286 IKEINLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALENFKGVERRFELI 345

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIMGKIALD 408
                  ++  D+     ++++ +  +  +    + +++   G+R     R +  ++   
Sbjct: 346 YDEK--FKVLDDHFANEKNIDVTMTTLSQMNYKNLHILYAIRGNRGVELNRAVDERLCFW 403

Query: 409 LADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIE---------AIRTAIEML 456
           L  +   T     SED  K + ++      +   + K N IE          I   ++  
Sbjct: 404 LKKLKASTLFTTFSEDTVKQKDKVTQEEKAVYAEVLKNNNIETVYFNELKDGINNILKKA 463

Query: 457 NKQDVLVVAG 466
              D++++AG
Sbjct: 464 QSGDIVLLAG 473


>gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
 gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
          Length = 452

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 154/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRQAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Edwardsiella tarda FL6-60]
          Length = 458

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/413 (20%), Positives = 150/413 (36%), Gaps = 28/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + +    +   +  +  V++D+R +  G +FVA+ G+  DGH F  QA  
Sbjct: 1   MIATTLQTLADAIGATLI-GADSPVTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQARE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V+   +L         + P L+V +TR  L    + +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVNRRLAL---------DVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I    G   +  G  +                      L          +
Sbjct: 111 KTSVKEMSAAILGLCGNVLYTAGNLNN-------------DIGVPLTLLRLEPQHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +   +  +    NL   H++   +      AK  +F  L P +  AI
Sbjct: 158 ELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLSGVAQAKGEIFAGL-PPQGTAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + AD    +              S     G   +   V +       T+       D L 
Sbjct: 217 VNADSNDWENWQHALTEQRVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPAGQCDVLL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   + NAL AA L +++G     V + L  L  VPGR   +        +   Y  
Sbjct: 277 PLPGRHNIANALAAAALTMSVGATLTQVQQGLAGLQAVPGRLFPIRLGEHQLLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
              S+    + +  +   R++VV      G + +   R +         D  +
Sbjct: 337 NVGSMSAAAEVLGHMPGYRVMVVGDMAELGAEAEACHRRVGQAARAAGIDKVL 389


>gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes L99]
          Length = 470

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 176/473 (37%), Gaps = 45/473 (9%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +                              V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVT 416
             +  +L+ +LK    +  +     +V     +       +  + A     D      + 
Sbjct: 348 NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLY 407

Query: 417 DD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
            D      E  E    +      G +   +  E++ TA +  +   + ++V G
Sbjct: 408 GDAMKAFGEVAESKIGQ------GKVHHFDTKESLETALLAEIKGNEWILVKG 454


>gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 455

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 172/463 (37%), Gaps = 28/463 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +L   L+     + +  ++ +S D+R IQ G +FV   G + +GH F+ QA  +G
Sbjct: 2   KKTLKQLAAWLNEDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +                  P+L VD+    L   A     +H    + +TG++GK+
Sbjct: 62  AGASLWQKD------EPNPPEGIPLLFVDDPEVALQEMARAYRNEHKAKFIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +      +G  +       TI +F                 L       V  + +
Sbjct: 116 STKDIL------AGTLAPFFKVQKTIGNFNNQLG-------LPITILQLDEDTEVAVLEM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +      +      TN+G  H+    ++     AK  + + + P +      
Sbjct: 163 GMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQP-DGLLFYD 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            D+   +E++  A       ++ G +    ++   + A  N    T +    + DF   +
Sbjct: 222 GDEPLLQELV--AKEMHLNAVAFGLEPNNLLYADHIHANANGSSFT-THGMIEGDFFISV 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+ QV N LVA  +   +G+ +  +   LE + +   R + V   +    I   Y    
Sbjct: 279 LGKHQVKNTLVAMLISHQLGLKNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAP 338

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSE 423
            S++  ++ I T T      +V G   +    ++     +A ++ +  I  V    PR  
Sbjct: 339 TSVKAAIQFIATSTIRPEKWLVLGDMLELGPDEQRFHEGLAEEIDEQEIDYVCLFGPRMT 398

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              ++  E   G    +   +   AI   +++ N+  ++++ G
Sbjct: 399 HLYEVLKE-RFGAERLLYAEDDYTAIIEKLKLANESSIVLLKG 440


>gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O46]
          Length = 452

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 164/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNGTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKG 437


>gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 451

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 175/469 (37%), Gaps = 40/469 (8%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ N +S     Q+  R I  V+ DSR I+   +F+   G   DGH FI QA+
Sbjct: 1   MINVTLQQIQNWISCEIDEQYLSRSIKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        L +         PI+ V++T + L   A          ++AVTG++
Sbjct: 61  KDGAVASFSEKGTELSE-----DVEGPIIWVEDTLQALQDLAKAYLKHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           GK++    ++ +        +  G  + +IG   TI                    L   
Sbjct: 116 GKTTTKDMIESVLTTEFKVKKTQGNYNNEIGMPLTI--------------------LDLD 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               ++ + +  S     +      +      TN+G  H+    +++    AK  +   L
Sbjct: 156 EDTEISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I   D+      +K+   A  +++SVG  G    L         + +  ++  
Sbjct: 216 -KDNGTFIYDGDEPLLTPHVKQIQQA--KLISVGL-GDANSLVCHVDDVETEGIGFTINN 271

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +  ++ P+ G   + NA +A  +   +G+  A + E++  + +   R E   T+     
Sbjct: 272 DE-SYVLPILGIHNMKNAAIAIAVGHELGLPYATIKENIRHVQLTGMRMERHQTDDNVTV 330

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I   Y  +  S++  +  + ++  GR I++     +     + +  ++   L   +I   
Sbjct: 331 INDAYNASPTSMKAAIDTLSSM-EGRKILILADVLELGTNSQQMHEEVGTYLDGKSIDIL 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               +E  E I       +       ++ E I+    ++ + D ++V G
Sbjct: 390 FTYGTEA-EYIFNTGQSYVETAKHFDDKSELIKELKAIVKENDKILVKG 437


>gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20]
 gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae
           Rd KW20]
          Length = 457

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/460 (21%), Positives = 171/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ ++++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S          + P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK    K +         T+     + +   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G     V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  ++   + RI+ V       +      R +   I L   D+           +   + 
Sbjct: 346 IDVLKGYDAFRILCVGDMKELGENSLAIHREVGQYINLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVSG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
 gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
          Length = 464

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 152/404 (37%), Gaps = 21/404 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL +  S   +  ++  + +VS+D+R      +F A+ G   D H ++ QA+ 
Sbjct: 1   MIKLSTKELADIFSARLIGAKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P L+V +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCSAVVVERECDV---------DVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q+       +    T  +F  D  +           L   S      +
Sbjct: 112 KTTVKEMTASILQKVAQDPDAV--LFTQGNFNNDIGVP-------LTLLRLESKHKFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +D ++       N+   H++   + +    AK  +++ L       +
Sbjct: 163 ELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGSVEGVAQAKGEIYQGLSENGIAIM 222

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302
            Y      ++    ++  NA  R+ SV  +    + +++       Q T+  +   +   
Sbjct: 223 EYEHSVRYQKKYWYEQIGNADTRLFSVMGKVSDYYAQEIKLTETGSQFTLCCIREGEIKI 282

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G   V NA+ AA L + +G+    +   LEK   V GR   +        +   Y
Sbjct: 283 NLPYLGLHNVSNAVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPNLLLLDDTY 342

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
               +SL+  +  +R       I   G   +          ++A
Sbjct: 343 NANVSSLKSAIDVLRQYDKFFRIFAVGDMAELGGNSVSCHKQVA 386


>gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 455

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 144/411 (35%), Gaps = 36/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +FV I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  + +  +           +L V +T K +   A     K    ++ +
Sbjct: 54  GSAIEAGASATLWEAGHPNK------PEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +N +  P  I   K ++ +   
Sbjct: 108 TGSNGKTTTKDMVAAVLAK------RFNVYKTQANF--NNEIGVPMTILEMKPITEIL-- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G         +      T +G  HI++  ++    +AKM +  + L +
Sbjct: 158 ---VLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKIADAKMEI-TDFLQE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     + +RA        + G+                      + G D 
Sbjct: 214 DGEFIYNGDEPL---LAERAAKLSQDKSTFGFADSDSIHASDLRSTMHHSF-FKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+      G  I  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEK-GDCGEDIMS 328

Query: 361 D-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           D Y     +++ +  +   +     GR I V     +       +   +A 
Sbjct: 329 DIYNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
 gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
          Length = 457

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 169/491 (34%), Gaps = 59/491 (12%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I K   E+   + I      +    I  VS DSR I  G +FV   G   DGH F+  A
Sbjct: 1   MIKKTLQEIEQMIKIENDVSSFHNTSIQGVSIDSRKIGRGNLFVPFKGENSDGHRFVEDA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I +GA A                  + PIL+V++T   L   A     +    +  +TG+
Sbjct: 61  IEKGAAAAFWQKDVP------NPPLHLPILIVEDTLTALQELARSYRDELKIKVAGITGS 114

Query: 124 SGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +GK++       +        +  G  +  IG   TI                    L+ 
Sbjct: 115 NGKTTTKDMTANLLSLQYKVQKTEGNYNNHIGLPLTI--------------------LAL 154

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +  + +  S  G         +  A   TN+G  H+    +++    AK+ +   
Sbjct: 155 EEDTEIAVLEMGMSGRGEIDFLTKLARPDAVIITNIGESHLQDLGSREGIAEAKLEIVNG 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L  +    I Y D+    E +K ++N    + + G  GK   +  +    N    T  + 
Sbjct: 215 L-QENGLVIYYGDEPLLDEKLK-SYNGSAALRTFGRTGK-NDVYPMDIKQNDSGSTFGIN 271

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                F  P+ G   V NAL A       G+    + E    L +   R E +   S   
Sbjct: 272 VSSGKFYLPVLGTHNVLNALAAMIAAAHFGVPYEKMNEGFASLKLTNMRMELLEGQSGEK 331

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD---RDQGKRPIMGKIALDLADI 412
            I   Y  +  S+   ++ I  +    + I+V G   +   +++      GK        
Sbjct: 332 IINDAYNASPTSMNAAIELIANLPGYKKKILVLGDMLELGPQEEDFHYSTGKSVDPEKVD 391

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV- 464
            + T          K+   I  G    +    R+ A       I    + ++ + +++V 
Sbjct: 392 YVFT--------FGKLGEYIAKGAKEVLPHE-RVAAFTDKQPLIEELKKHVDPETIILVK 442

Query: 465 AGKGHETVHIV 475
           A +G +   +V
Sbjct: 443 ASRGMKLEEVV 453


>gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
 gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
          Length = 452

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L PK   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PKNGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 455

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 144/411 (35%), Gaps = 36/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +F+ I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFIPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  +    +           +L V +T K +   A     K    ++++
Sbjct: 54  GSAIEAGASATLWEAGNPNK------PEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +N +  P  I   K ++ +   
Sbjct: 108 TGSNGKTTTKDMVAAVLAK------RFNVYKTQANF--NNEIGVPMTILEMKPITEIL-- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G         +      T +G  HI++  ++    +AKM +  + L +
Sbjct: 158 ---VLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKIADAKMEI-TDFLQE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     + +RA        + G+                      + G D 
Sbjct: 214 DGEFIYNGDEPL---LAERAAKLPQDKSTFGFADSDSIHASDLRSTMHHSF-FKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+      G  I  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEK-GDCGEDIMS 328

Query: 361 D-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           D Y     +++ +  +   +     GR I V     +       +   +A 
Sbjct: 329 DIYNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosomonas eutropha C91]
 gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosomonas eutropha C91]
          Length = 457

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 153/381 (40%), Gaps = 19/381 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR ++ G +F+A+ G + DG  FI  AI +GA A +VS+   +       +S+
Sbjct: 24  FTGVSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEKGAVAAMVSTDTVI----VPTKSD 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              + V++TR      A+         ++AVTG++GK++V   +  I +    S   +  
Sbjct: 80  FGWIKVNDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVKEMIAAIFRHEFGSGNVLAT 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T  +++                  L   +      + +  +  G   +            
Sbjct: 140 TGNLNN----------DIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQLAAPTIAVI 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G  HI++  T +A   AK  +F  L   +  AII ADDAY++   + A +   ++L 
Sbjct: 190 TNAGTAHIEHLGTTEAIARAKGEIFTGL-GAQGIAIINADDAYAQLWRQLAGSR--QILD 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G         +  +  ++    + +     +    +PG   +YNAL AA    A GI +
Sbjct: 247 FGITNPAAIRAQQMSSSSEAAWLLQLPDDKVEITLQVPGRHNIYNALAAAAAATAAGIST 306

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + E L      PGR +      +   I   Y    +S++  L  +  +   +I+++  
Sbjct: 307 TSIAEGLHNFMGTPGRLQKKVGLYQSILIDDTYNANPDSMQAALNVLAEMPGKKILIMGD 366

Query: 390 CGGDRDQ--GKRPIMGKIALD 408
            G       G    +G+ A  
Sbjct: 367 MGELGTDAAGFHYTIGQQAAK 387


>gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
 gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
          Length = 452

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 168/464 (36%), Gaps = 46/464 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A       S+ +  
Sbjct: 20  QFLNQEINGVTIDSRSISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTSIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDDDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +    NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VNEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHISVGNYLEEKHIDVLYT-----FGNEAKYIYESGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
             +       ++ + I      L   D ++V G +G +   +V 
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVN 448


>gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 459

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 163/408 (39%), Gaps = 33/408 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL  +L    +   +  I+ VSSDSR + +  +FVA+ G   DGH F   A+ 
Sbjct: 1   MISVSLSELATRLKGQLI-GDDLFIDSVSSDSRAVNSQTLFVALKGENFDGHAFAQAAVD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V     +         N   L+V+N++K +    + +  +     +A+TG++G
Sbjct: 60  AGANALLVERELPI---------NATQLIVNNSQKAMGEIGAYVREQVAPTCVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   +  I  +     +  G          +       P+ L + L      GV   
Sbjct: 111 KTSVKEMIATILSQKHQVLYTAG----------NFNNEIGVPLTLLR-LQQGDEFGV--F 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   + +    AK  +F   +     A+
Sbjct: 158 ELGANHAGEIDYTSSLVKPSVAMVNNVASAHLEGFGSLEGVAKAKSEIFNH-ISTGGTAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFD 301
           I ADDA++  +++ + +       V  +            +   + +   ++  + +   
Sbjct: 217 INADDAFADVMLQASSHVKQLCFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDAEVHR 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G  QV NAL A  +CIA+G+   L+ + L  L  V GR   + +      +  D
Sbjct: 277 VELPLAGRHQVSNALAATSICIALGLSLPLICQGLSLLQPVKGRM--LPSQLGRVTVIDD 334

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIA 406
            Y     S+   +  ++ I   R +V+   G   D        +G++A
Sbjct: 335 SYNANPASVGAAIDWLQEIKGNRCLVLGDLGELGDNAALLHRELGELA 382


>gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia
           stali symbiont]
          Length = 453

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 151/408 (37%), Gaps = 27/408 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++ ++S   +   +  I +V++D+R +  G +FVA+VG + D + F   AIA GA+A++
Sbjct: 7   QILAEISGGQLHGSDLTIADVTTDTRKVTLGSLFVALVGERFDAYDFAADAIASGAQALL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+   ++         + P +VV +TR       + +  +    ++ +TG+SGK+SV   
Sbjct: 67  VNRRLAV---------DVPQVVVADTRIAFGQLGAWVRQQAKARVVGLTGSSGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I ++ G + +  G  +                      L          + + A+  
Sbjct: 118 TAAILRQCGETLYTAGNLNNDYGVPMT-------------LLRLTPQHAYAVIEMGANHQ 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +  + ++       NL   H++   +      AK  +F  L P    AII AD   
Sbjct: 165 GEIAYTTNLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFGGL-PVHGTAIINADSND 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 +  +      S             +    +    T+     D     PLPG   
Sbjct: 224 LPNWQSQFADKILWRFSPQPMADAEFRASDIVLRADATLFTLHTPRGDIAVELPLPGRHN 283

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NAL AA L +++      +   L+ L  VPGR   +        +   Y     S+  
Sbjct: 284 IANALAAAALALSVDAPLTAIQSGLKTLQPVPGRLFPIRLAGNQLLLDDSYNANVGSMTA 343

Query: 372 ILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVT 416
             + +  +   R++VV      G + +   R +         D  + T
Sbjct: 344 AAQVLGDMPGFRVMVVGDMGELGDEAEACHRQVGEAAKAAGIDCVLST 391


>gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
 gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 164/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQGGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 GTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKG 437


>gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1346]
          Length = 474

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGDLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
 gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVL 388


>gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
 gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 138/381 (36%), Gaps = 25/381 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +EVS+DSR I    +F+A+ G + D H F P  +  GA A++V     +         + 
Sbjct: 31  SEVSTDSRQIGQDCLFIALKGERFDAHDFAPSVVENGAVALLVERELDV---------DC 81

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P ++V NTR  +   A+ +  +    ++ +TG+SGK+SV      I  + G + +  G  
Sbjct: 82  PQVIVANTRLSMGQLAAWVRKQSQAKVVGLTGSSGKTSVKEMTASILSQRGKTLYTAG-- 139

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L +            + + A+      +  + +K  +    
Sbjct: 140 --------NLNNDIGVPLTLFRL---THEYDYAVIEMGANHPNEIAYTTNIVKPESALVN 188

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL   H+    + +    AK  +++ L P E  AI+  D +YS     +           
Sbjct: 189 NLFAAHLAGFGSPEGVARAKGEIYQGL-PDEGTAIVNLD-SYSPHWQFQPRQTVWYYSLK 246

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                  +   +         T+           PLPG   + N L A+ L I++G    
Sbjct: 247 PQDKADFYPSDIEVKQLSTNFTLHTPVGQIAITLPLPGMHNIANVLAASALAISVGATLE 306

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L     VPGR   V  +     +   Y     S+   +  +  +   RI++    
Sbjct: 307 DIRNGLATTKAVPGRLYPVQLSPTKVVLDDTYNANDGSMIAAINVLAKMPGYRILIAGDM 366

Query: 391 GGDRDQGKRPIMGK-IALDLA 410
           G   D  +       IA   A
Sbjct: 367 GELGDYAQDCHQRVGIAAKDA 387


>gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 468

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/496 (17%), Positives = 160/496 (32%), Gaps = 67/496 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+      +   +   L+    Q   R +  V  DSR +Q G +FV + G + DGH F 
Sbjct: 1   MKM------ELSRIATVLNAVGEQTDGRTVTRVQIDSRVVQPGDLFVCLPGERVDGHSFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA A++        D         P+L+V +T K L   A    G     ++AV
Sbjct: 55  ADAVRKGAVAVLAQRPLPEVD-------GAPVLLVRDTFKALGDLAVAWRGSVQSRVVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   + Q                   S A++++            L+    +
Sbjct: 108 TGSAGKTTVKELIAQTLAA-------------EMSVAKNHKNLNNQIGLPLSMLAASGEE 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + V  S  G  +              N+G  H++   + +    AK  L    + +
Sbjct: 155 DVWVMEVGISRQGDMEELAPIASPDLAVIHNIGPAHLEGLGSLRGVAEAKAHLLTS-VRR 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+  D     E  +R      R +S   +        +          + +E +  
Sbjct: 214 GGAAIVNRDYPELWEAAQRIF-PSVRAMSTQNEKAPYFCTYLGPSQQGGVFLLRLEDERL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   P  G     N + AA     +G+ +  +++ L K  +   RF        G  I  
Sbjct: 273 EVDLPFLGAHFAENVVAAASAAYLLGMSAGSIVQALAKAQLPDQRFAAHHL-GFGTLIDD 331

Query: 361 DYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     S+   ++    +     +++V G   +          ++    A         
Sbjct: 332 TYNANPLSMSRAIQAATELAGNRPLVLVLGDMLELGSEAEAEHVRLGERAA--------- 382

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
                          G    + +G   +A+   +             KG      V  G 
Sbjct: 383 -------------ASGCAAVVYRGGFAKAVARGLAQAG--------FKG--RFQEVRAGA 419

Query: 480 KKMSVDCDIIREILGL 495
           +        + E LGL
Sbjct: 420 ELPP-----VLEDLGL 430


>gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 455

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 144/411 (35%), Gaps = 36/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +FV I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  + +  +           +L V +T K +   A     K    ++ +
Sbjct: 54  GSAIEAGASATLWEAGHPNK------PEGIAVLEVADTLKAMQDLARYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +N +  P  I   K ++ +   
Sbjct: 108 TGSNGKTTTKDMVAAVLAK------RFNVYKTQANF--NNEIGVPMTILEMKPITEIL-- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G         +      T +G  HI++  ++    +AKM +  + L +
Sbjct: 158 ---VLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFLGSRDKIADAKMEI-TDFLQE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     + +RA        + G+                      + G D 
Sbjct: 214 DGEFIYNGDEPL---LAERAAKLSQDKSTFGFADSDSIHASDLRSTMHHSF-FKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+      G  I  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEK-GDCGEDIMS 328

Query: 361 D-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           D Y     +++ +  +   +     GR I V     +       +   +A 
Sbjct: 329 DIYNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 535

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 114/499 (22%), Positives = 205/499 (41%), Gaps = 49/499 (9%)

Query: 1   MKLQDLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL DL+   K      NQL I   +  +  I +++  S+ + A  +FV I G++ DGH 
Sbjct: 1   MKLTDLLKSVKIDSSCHNQLKI---ELDKIDIKKIAYHSKEVGADTLFVCIKGHQTDGHN 57

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
           +   A +QGA  I+V       DF   I      L V ++R+ L++ +S  +    +  N
Sbjct: 58  YAKHAASQGATVIIVE------DFIEDIH--VIQLKVSDSREALAILSSNFFDHPSKSMN 109

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           I  VT T+GK+++   +++I + S L S  IG     I    + +RLTTP    L +  +
Sbjct: 110 IFGVTATNGKTTITYMIEEIFKASQLKSGLIGTILVKIDKEIEMSRLTTPESYDLQQHFA 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  + +THVS+E SS  L+  R+        +F N+  +HI  H++  AYF+AK  L  
Sbjct: 170 RMRDREITHVSMEVSSSALELKRVYNTDFDVVAFMNISPEHIKLHESFDAYFDAKASLIR 229

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTI 293
               K S AI+  D+     ++        +V++ G + K   +    +         T+
Sbjct: 230 N-ASKASTAILNLDEPL---LIPLEKETEAQVITFGIENKSGTITVSDIRFSSGIPSFTV 285

Query: 294 ------------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                       ++E   FD    + G   +YNAL A    +   +    +   ++    
Sbjct: 286 NIRKPFNTLSGKTIEITSFDLEMSVLGYHSIYNALTALVTGLVNDLPIEDIQRGIKNFQG 345

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  RF+ +    +  ++  D     N+++  ++ I  +    + +V    G         
Sbjct: 346 VERRFQVL--YDKEFKVIDDLLLNQNNIDSCMETISHLDYNELHLVHAIRGSNGPAHSTE 403

Query: 402 MGKIALDLAD-----IAIVTD----DNPRSEDPEKIRAEIIHGI-PGFIEKGNRIE---A 448
           + +              I+T      N   E  E+     +  +    IE     E    
Sbjct: 404 IAESLTKWFHKMKIAKIILTTAPSHVNKIDEVTEEELDAFLKVMHQNKIEVTFFKELDDT 463

Query: 449 IRTAIEMLNKQDVLVVAGK 467
           +   +E LN  D+L+++G 
Sbjct: 464 LLFGVEQLNVADILLISGA 482


>gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 147/387 (37%), Gaps = 25/387 (6%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            +  ++  I+ V++D+R + AG +FVA+ G + D H F  QA   GA A++V+    +  
Sbjct: 16  TLHGQDLTIDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKENGAGALLVNRKLDI-- 73

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                  + P +VV +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G
Sbjct: 74  -------DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG 126

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            + +  G  +                      L          + + A+  G     +  
Sbjct: 127 NTLYTAGNLNN-------------DIGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVSL 173

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +  A    NL   H++   + +    AK  ++  L P    AI+ AD+           
Sbjct: 174 TRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTGL-PDNGIAIMNADNNDWLNWQSIIG 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +      S            +    +  + T++      + L PLPG   + NAL AA L
Sbjct: 233 SRKTWRFSPNAADSDFTATHIHVTSHGTEFTLNTPTGGIEVLLPLPGRHNIANALAAAAL 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A+G     +   L  L  VPGR   V        +   Y     S+   ++ +  +  
Sbjct: 293 SMAVGATHDAIKTGLANLKAVPGRLFPVQLAENKLLLDDSYNANVGSMTAAVQVLSEMPG 352

Query: 382 GRIIVVFGCGGDRDQG--KRPIMGKIA 406
            R++VV       D+       +G+ A
Sbjct: 353 YRVMVVGDMAELGDESEACHIQVGEAA 379


>gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LF82]
 gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
 gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLDAIKAGLANLKAVPGRLFPIQLVENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVL 388


>gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           boydii ATCC 9905]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 536]
 gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia
           coli 536]
 gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 60-1]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 152/403 (37%), Gaps = 26/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIA 406
             S+   ++ +  +   R++VV          +     +G+ A
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHAQVGEAA 379


>gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
 gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 169/473 (35%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLYPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA--------- 413
             S+   ++ +  +   R++VV      G + +     +         D           
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHA 396

Query: 414 IVTD--DNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
           I T         D   + A +   I        + KG+R  A+   +  L + 
Sbjct: 397 ISTASGVGEHFADKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQEN 449


>gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 456

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 170/476 (35%), Gaps = 33/476 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   ++   L+I    + E  +  VS D+R I  G +F+   G   +GH F+ QA  +G
Sbjct: 2   KKSLQQIAEWLTIENQSFPETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +               ++ P++ V++    L   A     +H    + +TG++GK+
Sbjct: 62  AAASLW------MIDEPNPPAHLPLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +      +G  S       TI +F                 L       V+ + +
Sbjct: 116 SSKDIL------AGALSPYFKVQKTIGNFNNQLG-------LPITILQLDEDTEVSVLEM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +   +  +      TN+G  H+    +++    AK  + + L  +E      
Sbjct: 163 GMSGFGEIEFLTNLARPHYAIITNIGEAHMQDLGSREGIAKAKFEIVKGL-SEEGILFYD 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPL 306
            D+   + ++  A     +  + G+  +   L         Q  +  VEG    DF   +
Sbjct: 222 GDEPLLQNLV--AKTPHLKTQAFGFSQELN-LAASQIKATAQGSSFHVEGLIQGDFFISV 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE QV N L A  +  ++G+    + E L+K+ +   R + V        I   Y    
Sbjct: 279 LGEHQVKNTLSAMLVSKSLGLTDEQIREALKKVVLTDMRMQLVPVGDLLF-INDAYNAAP 337

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSE 423
            S+   ++ +   T      +V G   +    ++ +   IA  +   +I+ V    PR +
Sbjct: 338 TSMHAAIQFVEQTTIRNEKWLVLGDMLELGNEEKKMHEGIAGHIHPEEISYVCLYGPRMK 397

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                  E        +       A  I         + +L+V G +G +   I+ 
Sbjct: 398 WLYNKLQETFD--AEHLVYSENEYAPIIEKIQSHATNESILLVKGSRGMKLEKIIH 451


>gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
 gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
          Length = 470

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 180/473 (38%), Gaps = 45/473 (9%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G          +       P  +   L+      V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVT 416
             +  +L+ +LK    +  +     ++     +       +  + A     D      + 
Sbjct: 348 NSSPTALKTVLKTFMHMDSSGKPKYLILADMLELGDLSTKLHQESAEVLENDTIQKVFLY 407

Query: 417 DD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
            D      E  E    +      G +   +  E++ TA +  +   + ++V G
Sbjct: 408 GDAMKAFGEVAESKIGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 454


>gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 451

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 165/453 (36%), Gaps = 46/453 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  + +D   P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNEHYD--LPILGKHNMKNAT 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+   ++ ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 289 IAIAVGHELGLTYNIIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 348

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 349 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 403

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 404 QHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKG 436


>gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UTI89]
 gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli APEC O1]
 gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
 gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli UTI89]
 gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli APEC O1]
 gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IHE3034]
 gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UM146]
 gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 110-3]
 gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 16-3]
 gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H252]
 gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H263]
 gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVL 388


>gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 3431]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
 gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
          Length = 452

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILNQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVL 388


>gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Haemophilus influenzae F3031]
 gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3031]
          Length = 457

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 173/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S          + P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   + L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVNLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
          Length = 438

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 164/454 (36%), Gaps = 45/454 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           + +  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + + 
Sbjct: 5   INFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDEN 64

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC----- 137
            +      P++ V++T   L   A          ++AVTG++GK++    ++ +      
Sbjct: 65  VSG-----PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFK 119

Query: 138 --QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             +  G  + +IG   TI                    L   +   ++ + +  S     
Sbjct: 120 VKKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEI 159

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           +   +  +      TN+G  H+    +++    AK  +   L       I   D+   K 
Sbjct: 160 EFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKP 218

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA
Sbjct: 219 HVKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNA 274

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  
Sbjct: 275 TIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDT 334

Query: 376 IRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           + T+T  RI++   V   G +  +    +   +     D+           + + I    
Sbjct: 335 LSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSG 389

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +       ++ + I      L   D ++V G
Sbjct: 390 QQHVEKAQHFNSKDDMIEVLTSDLKAHDRILVKG 423


>gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 465

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 191/484 (39%), Gaps = 60/484 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L  +D  +    + +    +++ K++ +S+DSR+I+   +F+A+ G K DGH F+
Sbjct: 1   MSL-NLTVEDILKATKGI-LIKGNFKD-KVDSISTDSRNIKKDDVFIALKGEKFDGHEFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA+ ++VS   +L+D +        I+ V +T K L   A+         ++ +
Sbjct: 58  KDAILKGAKGVIVSRDVNLEDKAF-------IIKVQDTLKALQDIANYYLKTLNAKVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++  + V ++ +              I                    L      
Sbjct: 111 TGSSGKTTTKNLVGRLLKL-------------IGKVYVSKENFNNEIGVPLSILEAEKDV 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G         +   G  TN+G  HI    +++A   AK  +F+  + +
Sbjct: 158 DFLVLEMAMRGKGEISLLSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFDY-IKE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EG 297
           +  AI+  DD++S ++ +R H    +  + G++ +   L+ +     K+  T+ +   +G
Sbjct: 217 DGIAILNRDDSFSMKIYERLH---IKKYTFGFE-EGSDLRGLILDKGKESYTLGLYFPDG 272

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K      P+       N L A  +  +  I    +    E       +       ++ G 
Sbjct: 273 KRLTLSLPVYPLNIYRNLLSALLVLWS--ISPESIYRVKEDFDFTLPKQRLDVKRNKDGL 330

Query: 358 IYVD--YAHTSNSLEMILKNIRTI-TSGRIIV----VFGCGGDRDQGKRPIMGKIALDLA 410
           + +D  Y    +S++  ++ +  +   GR +     +   G    +G + ++ ++     
Sbjct: 331 VIIDDTYNANPDSMKTAIEYLELLDVPGRKVALLGDMLELGNYSIEGHKEVIEEVLKRNI 390

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-------GNRIEAIRTAIEM-LNKQDVL 462
           D+ ++               E+   +  F +         +  E I++ +   L  +D +
Sbjct: 391 DVIVLYG------------QEMKKALDEFEKIDWSKVHWSDNPEEIKSILRRSLQPKDTV 438

Query: 463 VVAG 466
           ++ G
Sbjct: 439 LIKG 442


>gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
 gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
          Length = 451

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 169/450 (37%), Gaps = 39/450 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            + E +I  V+ DSRH++   +FV   G   DGH F+ QA+  GA A        + D  
Sbjct: 20  AYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKDGAGASFYEKGQDISDSI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  PI+ VD+T   L   A          ++ VTG++GK++    ++ +       
Sbjct: 80  QG-----PIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDMIESVLHTEFRV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LQLDKDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    +++    AK  +   L   +   I   D+   K  
Sbjct: 175 LLSKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KSDGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           ++   NA  +++SVG   +   + KV        +   +  K+  +  P+ G   + NA 
Sbjct: 234 VENVKNA--KLVSVGLNHENTLVCKVE-NSKNDGIAFMINNKE-HYELPILGIHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+D   + +++  + +   R E   T+++   I   Y  +  S++  +  +
Sbjct: 290 IAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDTL 349

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            +  +GR I+V     +  +  + +   +   L D  I T       D + I     H +
Sbjct: 350 -SHMNGRKIIVLADSLELGENSQRMHEDVGAYLEDKGIHTLL-TYGNDAKFISRTGGHFV 407

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  ++ E       +L   D +++ G
Sbjct: 408 EDVAYFSDKNELTHYLKSILQPDDKVLIKG 437


>gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
 gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
          Length = 457

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/463 (21%), Positives = 172/463 (37%), Gaps = 39/463 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S            P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   + L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENFLAIHREVGQYVNLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKG 468
           +E + G   F +K   ++     I T ++   K   +VV GKG
Sbjct: 400 SEAVSG-KHFTDKVEMVDFLVPLIETQLQQNKK---VVVLGKG 438


>gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
 gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
          Length = 458

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 169/479 (35%), Gaps = 51/479 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +   E+ +   + P +W    ++ VS+D+R IQAG ++V + G   +GH F+ +A  +
Sbjct: 5   TVRQIAEMADGQCLKP-EWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQK 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++ +           +         D+T   L   A+R   +    ++ VTG++GK
Sbjct: 64  GAAAVLWAEREGTPPEGVPVVVV------DDTLLALQRLAARYREQLGLKVIGVTGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +           G          +       P+ L   LS      +  V 
Sbjct: 118 TTTKDMIAALLSTHYRVQKTEG----------NLNNHIGVPLTL---LSLDEGTEMAVVE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S  G  +      K  A   TN+G  H+    +++    AK+ +   L         
Sbjct: 165 MGMSGFGEIERLTMIAKPDAAVITNIGESHLQELGSREGIAKAKLEILAGLHHDGLFVYH 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +   ++ V K            G Q  +              V  ++ G+      P+
Sbjct: 225 GDEPLLTERVPKLPLPRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRT--LFMPV 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  VYNAL A  +    GID   +   L +L V   R E V T      I   Y  + 
Sbjct: 283 LGKHHVYNALAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASP 342

Query: 367 NSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVTD---- 417
            S+   L  ++ ++   + I V G     GD +      +G++    + D          
Sbjct: 343 TSMRAALMLLQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLAH 402

Query: 418 -----DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV-AGKGH 469
                  P  +D             G + + +   A+  A+  +    D++++ A +G 
Sbjct: 403 HIAAAAAPFFDD-------------GRVREFDDKAALAEAVRSVATSDDIVLLKASRGM 448


>gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 455

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 166/473 (35%), Gaps = 39/473 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDDQTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VD+    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVPM-------TILEMKPNT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +         T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGTRDKIADAKMEI-TDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+   A     + G++ +   +            T ++   + 
Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKA---TFGFRDEDT-VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     GR I V G   +  +    +   +  D  D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKNSPALHAGL-SDTLDPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 + + +   +          +  K      I      +   D++V+ G
Sbjct: 389 VYLYGSEMKNLYDALQDKYKPEHLHYYTKDQMDRMIDDLKNDIKSDDIVVLKG 441


>gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ED133]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 164/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFINQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTNDLKAHDRVLVKG 437


>gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0031]
          Length = 474

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPYAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999]
          Length = 469

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/408 (21%), Positives = 158/408 (38%), Gaps = 29/408 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q     +Q  +  I  VS+D+R I A  +F+A+VG   +GH+F  +A   GA A++ S
Sbjct: 9   IAQQVNGTLQGNDLIITNVSTDTREISADSLFIALVGPNFNGHVFANEARQNGAVAMIAS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      + ++ P+++V++T+  L    + +  K     + +TG+SGK++V     
Sbjct: 69  EP---------VEAHMPVIMVEDTKAALGALGAYVKQKVAPKTVGITGSSGKTTVKEMTT 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G         ST  +F  D  +           L   +      + + A+  G 
Sbjct: 120 AILKECGS------VLSTQGNFNNDIGVP-------LTLLRLEAEHEYAVIEMGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    +K    +  N    H++   +      AK  +F+ L  K   AI+  D  +  
Sbjct: 167 IAYTTGLVKPDVATIVNAAASHLEGFGSLFGVARAKSEIFKGL-SKSGTAILNYDSQFYD 225

Query: 255 EVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             + +  N      S+    G    +   +   A +      +     + +    LPG  
Sbjct: 226 FWLGKLDNELIYSFSLNSAPGKGADYSASQVGLAFNGCAHFIMHTPIGEMNIELTLPGIH 285

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL+AA L I +G     V + L K+  V GR E    + +   +   Y     S+ 
Sbjct: 286 NVGNALLAAALSINVGASLENVRDGLAKIQHVKGRLEVKQLSEKVRLLDDSYNANVASVT 345

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVT 416
             +K + +    R++V+       DQ       +G++A   +     T
Sbjct: 346 AAIKLLSSYEGRRVLVLGDMAELGDQARHYHEQVGELAKSESIEMFYT 393


>gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei Ss046]
 gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii Sb227]
 gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ATCC 8739]
 gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SE11]
 gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sp. D9]
 gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046]
 gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227]
 gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli ATCC 8739]
 gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11]
 gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)]
 gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli BL21(DE3)]
 gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Escherichia coli 042]
 gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli W]
 gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 85-1]
 gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           dysenteriae CDC 74-1112]
 gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           flexneri CDC 796-83]
 gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli EC4100B]
 gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli EPECa14]
 gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E128010]
 gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LT-68]
 gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1180]
 gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1357]
 gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli KO11]
 gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H120]
 gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H489]
 gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TA007]
 gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 117-3]
 gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1167]
 gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 5216-82]
 gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 3594-74]
 gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Escherichia coli UMNK88]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia fergusonii ECD227]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 171/473 (36%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA--------I 414
             S+   ++ +  +   R++VV      G + +     +         D          +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHV 396

Query: 415 VTDDNPRSE---DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
           ++  +   E   D   +   +   I        + KG+R  A+   +  L + 
Sbjct: 397 ISTTSGVGEHFADKTALITHLKSLIAEQQVITILVKGSRSAAMEEVVRALQEN 449


>gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 457

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 173/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S          + P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEISYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQGSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   + L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVNLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
 gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 169/473 (35%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILNQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA--------- 413
             S+   ++ +  +   R++VV      G + +     +         D           
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHA 396

Query: 414 IVTD--DNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
           I T         D   + A +   I        + KG+R  A+   +  L + 
Sbjct: 397 ISTASGVGEHFTDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQEN 449


>gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
 gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
          Length = 470

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 154/407 (37%), Gaps = 32/407 (7%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                  + P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVP------NPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +                              V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +L+ +LK    +  +     +V     +       +  + A 
Sbjct: 348 NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAE 394


>gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
 gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
          Length = 455

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 140/373 (37%), Gaps = 26/373 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +   VSSDSR I    +FVA+ G K DGH F   A+  GA A++V     L     
Sbjct: 19  GADGEFRHVSSDSRVIPEHTLFVALKGEKFDGHDFANMAVENGATALLVDHELPL----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N   L+V +T+K +    + L        +A+TG++GK+SV   V  I  +     
Sbjct: 74  ----NIAQLIVKDTQKAMGDLGAYLRELIQPKSVALTGSNGKTSVKEMVATILSQRHKVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G          +       P+ L + L      GV    + A+  G   +    +K 
Sbjct: 130 YTAG----------NFNNEIGVPLTLLR-LEADDEFGV--FELGANHQGEIDYTSSLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +F  L      A+I ADD ++  ++  + +  
Sbjct: 177 DVALVNNVASAHLEGFGSLAGVACAKSEIFNHL-AATGTAVINADDQFASVMLSASMSFT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                V  +                +  +S   +      PL G  QV NAL A  +C++
Sbjct: 236 QLTFGVESEADIQASDLEADSVGCYRFKLSYMQESVLIALPLSGRHQVSNALAATAICLS 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            G+    +   L  L  V GR   + T     R+  D Y     S+   +  ++ I   R
Sbjct: 296 FGLTLDEIKLGLSLLLPVKGRM--LPTQLGRVRVIDDSYNANPASVTAAIDWLQEIEGHR 353

Query: 384 IIVVFGCGGDRDQ 396
            +V+   G   D 
Sbjct: 354 CLVLGDLGELGDN 366


>gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Pantoea ananatis AJ13355]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 161/405 (39%), Gaps = 26/405 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +++   +   +  +N+V++D+R + AG +FVAIVG + D H F   AIA+G +A++VS
Sbjct: 9   LAEIASGTLHGDDLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGVKALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  + P +VV +TR      A+ +  +    ++A+TG+SGK+SV     
Sbjct: 69  K---------HLPVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I ++ G +    G          +       P+ L   L          + + A+  G 
Sbjct: 120 SILRQCGETLHTAG----------NLNNDFGVPMTL---LRLTPEHQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++  A    NL   H++   + +    AK  +F  L P    AI+ AD     
Sbjct: 167 IAYTTDLVRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIFYGL-PARGTAILNADSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S            +    +     +     + D + PLPG   + N
Sbjct: 226 RWQENLHGKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMHTPRGEADIILPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +++    + V   L++L  VPGR   V  +     +   Y     S+    +
Sbjct: 286 ALAAAALALSVDAPLSAVQAGLKRLQSVPGRLFPVRLSEHQLILDDSYNANVGSMVAAAQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +   R++VV      G + ++  R +         D  + T
Sbjct: 346 VLSEMPGYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLST 390


>gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 EDL933]
 gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. EC1212]
 gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1125]
 gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1044]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIVWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 457

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/460 (22%), Positives = 173/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S          + P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   I L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYINLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 163/453 (35%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  + IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQVINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKG 437


>gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K-12 substr. W3110]
 gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia sp. 4_1_40B]
 gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli H736]
 gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
 gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli]
 gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K12 substr. W3110]
 gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli DH1]
 gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Escherichia coli ETEC H10407]
 gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia coli DH1]
 gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1520]
 gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
 gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
          Length = 456

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 98/482 (20%), Positives = 184/482 (38%), Gaps = 39/482 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  +              ++++ V  DSR +Q G++FVAI G + + H FIP 
Sbjct: 1   MKNLSIENITKACRGTFHGDESILSQEVSGVVIDSRKVQPGYLFVAIDGERVNAHKFIPD 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA  +V        DF        P ++V++T + L   A          ++ +TG
Sbjct: 61  TVKAGAMCVVSHEDLGETDF--------PYILVESTGQALLDIAKLYRDSFDMKVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T+ +F         +   L   +  +     
Sbjct: 113 SVGKTSTKEMIASVLAQ------KYHVHKTLGNF--------NNEWGLPITIFDMPEDTE 158

Query: 183 THVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     +H  +  RL  +        TN+G  H+++ +T++     K ++ ++ +   
Sbjct: 159 VAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQD-MKNG 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDF 300
              I+  DD    + M            +G    F               TI++ +G  F
Sbjct: 218 GSIILNGDDDLLSK-MSPVKGVTPVFFGMGDNCAFRADNIEPQGLRGTSCTITLKDGSSF 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D L P+PG   V NA+  A +   +G+ +  +   +E L  +PGR   + T+     I +
Sbjct: 277 DCLVPVPGIHMVSNAVAGAAVGYTLGLTADEIKAGIESLPSIPGRNHIIETDH---MIIL 333

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIV 415
           D  + +N + M    ++  +  GR + V G  G+       +  ++    A    D+   
Sbjct: 334 DDCYNANPISMKASIDVLNMAIGRKVAVLGNMGELGDTAEALHAEVGTYAAEQNVDLVCG 393

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHI 474
             D  RS   E  +      +  F +  + I+AI   I      D VLV A  G     I
Sbjct: 394 IGDLTRSLVEEASKGANTEAL-WFADNESFIQAIPDII---KDGDNVLVKASHGMNFPQI 449

Query: 475 VT 476
           V 
Sbjct: 450 VH 451


>gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 455

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 166/473 (35%), Gaps = 39/473 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKDLNTTCEGDDKTVITSVAFDSRKITTGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VDN    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PENITVIEVDNPLTAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSK------RFNVHKTQANFNNEIGVPM-------TILEMKPNT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +         T +G  HI++  ++    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEI-TDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+   A     + G++ +   +            T ++   + 
Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKA---TFGFRDEDT-VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     GR I V G   +  +    +   +  D  D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKKSPELHAGL-SDTLDPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 + + +   +          +  +      I      +   D++V+ G
Sbjct: 389 VYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDIKPDDIIVLKG 441


>gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli M863]
 gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli STEC_7v]
          Length = 452

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 10403S]
          Length = 457

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 170/459 (37%), Gaps = 43/459 (9%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 15  SIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVP 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                    ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I +
Sbjct: 75  ------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVE 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +    +  G  +                              V  + +  +     +  
Sbjct: 129 TTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIEVL 175

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K      TN+G  HI+Y  +++    AK+ +   L P            + + ++ 
Sbjct: 176 SKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLL 230

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N + 
Sbjct: 231 GNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK  
Sbjct: 290 AMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTF 348

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDD--NPRSEDPEKI 428
             +  +     +V     +       +  + A     D      +  D      E  E  
Sbjct: 349 MHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESK 408

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
             +      G +   +  E++ TA +  +   + ++V G
Sbjct: 409 IGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 441


>gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
 gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 167/486 (34%), Gaps = 44/486 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ L+  +  E +     +P      ++ ++S+D+R I  G +F+A+ G   DGH F  +
Sbjct: 1   MEKLMLSEIIEAVRGSYGYPA---NVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAK 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A+V                    L+VD+T + L   AS    K    ++ +TG
Sbjct: 58  AMELGAIAVVTERPVD----------GARCLIVDSTAQALLDSASYYRSKFDIPLVGITG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +  +  RS           T ++                  L   ++   
Sbjct: 108 SVGKTTTKEMIYSVLSRS------FKTLKTEAN-------HNNEVGMPKTLLELDNTHQA 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +  G         K      TN+G  HI+   +Q+    AKM + +     ++
Sbjct: 155 AVIEMGMNHKGEISRMSTSCKPTICVITNIGVSHIENLGSQEGILKAKMEILDG-ASADA 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           P I+  DD    +  +          SV  +   ++   + A       TI  + +  + 
Sbjct: 214 PLILCRDDKLLAK-AEIYGGRQVWYYSVSKKDCDVYASDIAADSKGISFTIHYKREKLNA 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                GE  V NAL A     A G+++  ++  L        R   +  N     +   Y
Sbjct: 273 RINCLGEHNVKNALAAFCAGAAAGMENEDIIAGLADFRPEGMRQNIITENGMTF-VLDCY 331

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIVTD 417
               +S++  L  +  I   GR   V G   +  +G     R +   +     D+ +   
Sbjct: 332 NAAPDSMKASLSVLSQISVRGRRFAVLGDMLELGKGTARYHRTVGEYVKASKTDVLLCYG 391

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAG-KGH---ET 471
            N        I      G      K   +  E +      L + D ++  G +G    E 
Sbjct: 392 KNSTY----YIEGACDKGFDRENTKHFESHEELVEYLKANLKEGDAVLFKGSRGMKLEEV 447

Query: 472 VHIVTN 477
              +  
Sbjct: 448 YEAIKQ 453


>gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
 gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
          Length = 457

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 182/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 1   MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 54  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 108 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 164 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENFGSRAGIAQAKMEIVDGL- 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 214 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 270 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 328

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +  ++A  LA  AI  
Sbjct: 329 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEE 388

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 389 VFLYGSEMAYLADKLQETYAPTNIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 439

Query: 465 AG 466
            G
Sbjct: 440 KG 441


>gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri VA-6]
          Length = 452

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIARTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEDCHVQVGEAAKAAGIDRVL 388


>gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli CFT073]
 gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli CFT073]
 gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ABU 83972]
 gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 153-1]
          Length = 452

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGCHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
 gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
          Length = 470

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 156/407 (38%), Gaps = 32/407 (7%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +                              V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    +   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNIDGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFVTNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ TNS G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTNS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +L+ +LK    +     +  +V     +       +  + A 
Sbjct: 348 NSSPTALKTVLKTFMHMDSNGKQKYLVLADMLELGDLSTKLHQESAE 394


>gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 459

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 135/409 (33%), Gaps = 21/409 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     +L + L    +   E  +  VS+DSR  I  G +F A+ G   D H ++ +A+
Sbjct: 1   MITLSLSQLASILDAQLLGDGELTVENVSTDSRQSISKG-LFFALKGEHFDAHHYLDKAV 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            QG  A VV    +              LVV +TR  L   A  L  K     +A+TG+S
Sbjct: 60  EQGCIAAVVERQTNSP---------IAQLVVKDTRLALGQLAKWLREKINPKTVAMTGSS 110

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+++      I Q+S +    +    T  +F  D  +         +    +   G  H
Sbjct: 111 GKTTIKEMTAAILQQSAVDFDDV--LFTHGNFNNDIGVPLTLLRLTEQHKFAVIELGANH 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +   A +  L Q              N+   H++   +      AK  ++  L      A
Sbjct: 169 IGEIAYTTALAQ-------PDVALVNNVAAAHLEGFGSLDGVATAKGEIYRGLT-SNGTA 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II     Y ++      +   +  +        + + +          +           
Sbjct: 221 IINLAHNYQQKWQAEIADHSVQYFAYDNPKADYYAENIVFSEQGASFLLHTPKGSIQIHS 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              GE  V NAL A  L + +G     V   L     V GR   +        +   Y  
Sbjct: 281 SYLGEHNVSNALAATALAMNVGASLQDVQNGLAMKSQVKGRLFPIEPCENLLLLDDTYNA 340

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             +S++  +  ++   + R+ VV       D  +           A   
Sbjct: 341 NVDSMKSAISVLQKYPAFRVFVVGDMAELGDNTQLCHQEVADFAHAAKL 389


>gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes LO28]
          Length = 447

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 170/461 (36%), Gaps = 43/461 (9%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
             SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A      
Sbjct: 3   DSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKN 62

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                      ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I
Sbjct: 63  VP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAI 116

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +    +  G  +                              V  + +  +     +
Sbjct: 117 VETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIE 163

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K      TN+G  HI+Y  +++    AK+ +   L P            + + +
Sbjct: 164 VLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETL 218

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +    N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N 
Sbjct: 219 LLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNT 277

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           + A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK
Sbjct: 278 MAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLK 336

Query: 375 NIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDD--NPRSEDPE 426
               +  +     +V     +       +  + A     D      +  D      E  E
Sbjct: 337 TFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAE 396

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
               +      G +   +  E++ TA +  +   + ++V G
Sbjct: 397 SKIGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 431


>gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 457

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/459 (19%), Positives = 171/459 (37%), Gaps = 43/459 (9%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 15  SIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVP 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                     + P+++V++T   L   A++   +    ++A+TG++GK++    +  I +
Sbjct: 75  ------NPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVE 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +    +  G  +                              V  + +  +     +  
Sbjct: 129 TTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIEVL 175

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K      TN+G  HI+Y  +++    AK+ +   L P            + + ++ 
Sbjct: 176 SKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLL 230

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N + 
Sbjct: 231 GNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK  
Sbjct: 290 AMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTF 348

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNPRSEDPEKIRA 430
             +  +     +V     +       +  + A      + +   +  D        K   
Sbjct: 349 MHMNSSGKPKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGD------AMKAFG 402

Query: 431 EIIHGI--PGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
           +I       G +   N  E++ TA +  +N  + ++V G
Sbjct: 403 DIAEAKIGQGKVHHFNTKESLETALLSEMNGNEWILVKG 441


>gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O11]
          Length = 452

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 164/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ +++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWIEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCSVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIEVLTSDLKAHDRVLVKG 437


>gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
 gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
          Length = 477

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 148/410 (36%), Gaps = 28/410 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +     +L+  ++  P+      I  +S DSR IQ G  F AI G++ DGH +   A+A 
Sbjct: 3   LLWTIEDLVAAMTGRPVGTMPPGITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIAVAN 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VV+ A       A  R   P++VVD+  + L   A     +    I+AVTG+ GK
Sbjct: 63  GAALMVVNEA----KLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHV 185
           ++    ++Q+   SG     +               +  +   +   L+ + ++      
Sbjct: 119 TTTKEMLRQVLAPSGEVHAAV--------------ASFNNHWGVPLTLARMPATAQYGVF 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  +  G     +  ++      T +   H+    +     +AK  +F   +      +
Sbjct: 165 EIGMNHSGEITPLVQMVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSG-VAANGGVL 223

Query: 246 IYADDAYSKEVMKRAHNA-GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +  D+ Y + +  +A  A    + S G   K    L +             ++G+  + +
Sbjct: 224 LNHDNPYFEYLEHKAQEAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVV 283

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYV 360
              PG     NA+ A G    +G D    ++ L +L  V     R      +     I  
Sbjct: 284 IAAPGRHIAENAMAALGAARLLGADLDGAVDALSRLSPVKGRGERHRLRCASGLFTLIDE 343

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIAL 407
            Y     S+   +  +        G  I V G   +  +    +   +A 
Sbjct: 344 SYNANPASMRAAIAVLAAAQPRGEGHRIAVLGDMLEMGEFSEELHADLAG 393


>gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
          Length = 483

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 151/377 (40%), Gaps = 13/377 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +   VS+D+R I+AG +++A+ G K DG  F  QAI  GA A+++++  S +  S  +
Sbjct: 20  DARFMAVSTDTRKIKAGDLYIALRGEKFDGADFAAQAIESGATAVLMNAD-SFEARSLIL 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + IL+V +TR  L   A+    K    ++A+TG++GK++V   +  + + +  S   
Sbjct: 79  NPQSSILLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKTTVKEMLASVLRSAAGSDDA 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +   +T  +F  D  +           L   +      + +  +  G   +         
Sbjct: 139 V--LATKGNFNNDIGMP-------LTLLQLNAQHRYAVIEMGMNHPGEIDYLTRIACPNV 189

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N    H++   + +A  +AK  +F  L P    AII ADD ++   + R       
Sbjct: 190 ALINNASGAHLEGMGSVEAVAHAKGEIFSGLQP-GGSAIINADDEFAP--LWRCLAGANS 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +L  G  G    +          ++ +     DF     +PGE    NAL      IA+ 
Sbjct: 247 LLEFGLSGHSDVVGAWQPNGAGLRLDVKTPVGDFTVEMQVPGEHNARNALAVTAAAIALN 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    ++  L K   V GR +          I   Y     SL+  +  +  ++  R++V
Sbjct: 307 LSLESIVAGLSKFSGVAGRLQRKPAREGAVLIDDTYNANPASLKAAIAVLAAMSGQRVLV 366

Query: 387 VFGCGGDRDQGKRPIMG 403
           +   G   +       G
Sbjct: 367 LGDMGELGEDTAAFHAG 383


>gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401]
 gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 4343-70]
 gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-218]
 gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-272]
 gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-227]
          Length = 452

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51]
 gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 480

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 164/473 (34%), Gaps = 53/473 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +    DSR ++AG IF A+VG + DGH +I  A  +GA  ++             +    
Sbjct: 15  SGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGK 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V++    +   A     +    ++A+TG++GK++    V  +              
Sbjct: 75  ALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLSEK---------- 124

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  ++              L+   +  V  + +     G         +   G  T
Sbjct: 125 ---YRVHKNMENQNNELGLPMTILNAPENTEVLILEMGMRGLGQIAFLCAIARPDIGVIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H++   +QQA   AK  L E L P+   A++  +D +S   +K A     +    
Sbjct: 182 NIGTTHMELLGSQQAIAQAKWELIEAL-PETGSAVLNGEDEWS---VKLAGQDSHQTFFY 237

Query: 271 GYQGKFIHLK----------------KVCAIHNKQQVTISVEGKDF----------DFLF 304
           G +G+F                    +V           +V   +               
Sbjct: 238 GLEGRFHEPDLRGMNLTPFGILGTRFQVGHRQVGHGDRCAVPFAEVAAEVGQKTCPHVSL 297

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPGE  V +AL A  + I + +        L  + +   R E          I   Y  
Sbjct: 298 PLPGEHNVLDALAALSVGILLDVSLEEGCRGLAAMELSRMRLELHQGPEGSTLISDVYNA 357

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRS 422
              S++  L+ ++       + + G   +  +  R    ++   +A++ I  +    P +
Sbjct: 358 NPTSMKASLQVLKERGGASTLAILGEMYELGEASREGHYEVGQTVAELGISELITVGPLA 417

Query: 423 EDPEKIRAEIIHGIP--GFIEKGNRIEAIRTA---IEMLNKQDVLVV-AGKGH 469
           E+       +  G+         +R  AI+ A   +  LN+   +++ A +G 
Sbjct: 418 EEIA--CGALEKGLSPQRIHSFPDREGAIKKAQELLADLNQGTWVLIKASRGM 468


>gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL J1-023]
          Length = 470

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 158/407 (38%), Gaps = 32/407 (7%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V+NT   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVP------NPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G          +       P  +   L+      V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    +   R L+ G   +  I+  ++ A         + E  D +  
Sbjct: 235 Y-----PHEENLLLGNVDGDFRQLTFGKSDEAEIYPLEIRAEAEGTSFITNWE-PDLEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +L+ +LK    +        +V     +       +  + A 
Sbjct: 348 NSSPTALKTVLKTFMHMDSKGKPKYLVLADMLELGDLSTKLHQESAE 394


>gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
 gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
          Length = 452

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 98/473 (20%), Positives = 170/473 (35%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +   +  ++ V++D+R + AG +FVA+ G + D H F+ QA  
Sbjct: 1   MIRVTLSQLADVLQ-GELHGSDLAVDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS   +          + P +VV +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRKLAC---------SLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILGQCGKTLYTAGNLNN-------------DIGVPMTLLRLTREHEFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P++  AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGL-PQDGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S    G       +         T+       D L P
Sbjct: 217 LNADNNDWLNWQSVIGDRQVWRFSPNAAGSDFTASDIQVTSGGTAFTLRTPQGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     V   L KL  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALAMAVGAGLDAVKAGLAKLQAVPGRLFPISLAQHKLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI-------- 414
             S+    + +  +   R++VV      G + +   R +         D           
Sbjct: 337 VGSMTAAAQVLSDMPGYRVLVVGDMAELGDESEACHRQVGEAAKAAGIDRVFSVGRLSQL 396

Query: 415 VTDDNPRSE---DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
           +   +   E   D   + A +   I        + KG+R  A+   +  L + 
Sbjct: 397 IGAASGVGEHFADKAALIARLKTAIEEQQIITILVKGSRSAAMEEVVRALQEN 449


>gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
 gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
          Length = 445

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 170/466 (36%), Gaps = 50/466 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  ++ ++      Q+S  P          VS+D+R +Q G +FVA+VG K DGH ++ 
Sbjct: 4   QLTAILGENLRRSPQQISPEPA-------TGVSTDTRDLQPGNVFVALVGEKFDGHDYVD 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA   GA A++ S             ++ P  +V++T +      +    +    ++ +T
Sbjct: 57  QAHQAGAIALITSRPLE---------TDLPQWIVNDTLRAYQDLGAWWRQQVNIPVIGIT 107

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK+S    +  I    G          T ++F  +  +           L+      
Sbjct: 108 GSVGKTSTKELIAGILGTQGK------VLKTEANFNNEIGVP-------KTLLNLTPDHD 154

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +     G      +  +   G  TN+G  HI    +++A   AK  L E  +PK+
Sbjct: 155 FAVIEMAMRGPGEIARLAEIAQPTIGIITNVGTAHIGRLGSREAIAKAKCELLE-FMPKD 213

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           S A++ AD+     +   A       LS G+    +  + +            V+  D  
Sbjct: 214 SVAMLNADNELL--MATAATVWSGETLSYGFSQGDLTGEYIAPDQ--------VKVADQV 263

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  PL G+    N L A G+   +G     +   +  L +  GR + +   +    +   
Sbjct: 264 FPVPLAGQHNALNYLAALGVMQVLGFGWQGLTTEIS-LAMPKGRSQRIVLPNDIVLLDET 322

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTD 417
           Y     S+   L  ++     R I V G   +  +    +  ++         D   V  
Sbjct: 323 YNAGLESMLAALDLLKQTPGDRHIAVLGTMKELGEFSEALHTQVGEKAQTLGLDQLYVLV 382

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+P      +  A+   G+P  +   +    I      +   D L+
Sbjct: 383 DDP----EAQAIADGALGVPS-LCFPDHRSLIEHLRANMQPGDRLL 423


>gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 455

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 165/474 (34%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L        +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKALDKTCEGDDKTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +           ++ VD+    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PEGIAVIEVDDPLAAMQTLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSK------RFNVHKTQANFNNEIGVPM-------TVLEMKPNT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +  +      T +G  HI++  ++    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTRPDVAVITMIGEAHIEFFGSRDKIADAKMEI-TDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+   A     + G++     +            T ++   + 
Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKA---TFGFEDDDT-VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+      G  I  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEK-GDVGEAIMS 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           D Y     ++  ++ +   +     GR I V G   +  +    +  ++  D  D  I+ 
Sbjct: 329 DIYNSNPTAVRAVITSFGQVEVKDGGRRIAVLGDMLELGENSPKLHAEL-SDTLDPQIIN 387

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +      + + +   +          +  K      I      +   D++V+ G
Sbjct: 388 EVYLYGPEMKNLYDALQGKYESEHLHYYTKDQMDRMIDDLKNDIKSDDIVVLKG 441


>gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-003]
          Length = 457

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 170/459 (37%), Gaps = 43/459 (9%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 15  SIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVP 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                    ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I +
Sbjct: 75  ------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVE 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +    +  G  +                              V  + +  +     +  
Sbjct: 129 TTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIEVL 175

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K      TN+G  HI+Y  +++    AK+ +   L P            + + ++ 
Sbjct: 176 SKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLL 230

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N + 
Sbjct: 231 GNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK  
Sbjct: 290 AMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTF 348

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDD--NPRSEDPEKI 428
             +  +     +V     +       +  + A     D      +  D      E  E  
Sbjct: 349 MHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESK 408

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
             +      G +   +  E++ TA+   +   + ++V G
Sbjct: 409 IGQ------GKVHHFDTKESLETALFSEIKGNEWILVKG 441


>gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia fergusonii B253]
          Length = 452

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 455

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 166/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNTTCESDEKTIITSVAFDSRKITDGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +    +  +        +  +L VD+  + +   A     K    ++ +
Sbjct: 54  AGAINNGASATLWKKGHPNK------PDDIAVLEVDDPLEAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T  +F     +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQENFNNGIGVP-------MTILEMKPNT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +         T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     + +RA        + G++     +        K   T ++   + 
Sbjct: 214 DGEFIYNGDEPL---LAERAKKINQAKATFGFEDNDT-VYATGFRSYKHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+      G  I  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIAASLANFTPTANRMEWEK-GDVGEDIMS 328

Query: 361 D-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           D Y     ++  +L +   I     GR I V G   +  +    +   +A  L D  ++ 
Sbjct: 329 DVYNSNPTAVRAVLNSFGQIEMPNGGRRIAVLGDMLELGKKSPELHAGLANSL-DPQVIN 387

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +     ++ + +   +          + +  +    I      +   D++V+ G
Sbjct: 388 EVYLIGDEMKHLYEALQTKYSEESLHYYQADHMDHMIDDLKNDIKPNDIVVLKG 441


>gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
 gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
          Length = 458

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 96/490 (19%), Positives = 182/490 (37%), Gaps = 56/490 (11%)

Query: 6   LIYKDFPELINQLSIFP---MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I +   E+   + +     +Q  E  ++ V  DSR I+ G ++V + G   DGH ++  
Sbjct: 1   MIKRTIREMTGMIHVEDGEQLQHNETLVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVED 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  +GA A +               +N P+L+V++T K L   +          ++ +TG
Sbjct: 61  AFRRGAAASLWQKDVP------NPPANVPLLIVEDTEKSLQELSKSYRNALRAKVVGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    V  +         +     T  +F     +           LS      +
Sbjct: 115 SNGKTTTKDMVASVLSE------KFKVQKTEGNFNNHQGVP-------LTLLSLDEDTEI 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +  S+ G         +      TN+G  HI    +++A  +AK+ + E L P+  
Sbjct: 162 AVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQNLGSREAIADAKLEITEGL-PENG 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I   D+   +E +        +    G  G  ++  +     +      +  G D DF
Sbjct: 221 LLIYMGDEPLLQERVPNITGIRTKTFGKG-HGNDLYPVEWKQETSGSTFRTNASG-DIDF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+ GE+ V N+L A       G+    +   L K  +   R E       G +I  D 
Sbjct: 279 YLPVLGEYNVINSLAAILAGREFGMPFEEIRAGLGKTRLSAMRMEM-ADGINGSKIINDA 337

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y  +  S+   ++ +      GR I+V G   +  + +     ++               
Sbjct: 338 YNASPTSMRAAIRLVEQFEGTGRKILVLGDMLELGEKEAAFHREVG-------------- 383

Query: 421 RSEDPEKI-----RAEIIHGIPGFIEKGN-RIEAI---RTAIEMLN----KQDVLVV-AG 466
           R  +PEKI       ++   I    +  + R+ A    +  I+ML       D+++V A 
Sbjct: 384 RDLNPEKIDFVFTYGKLGRLIAEACDFPDNRVFAFEDKKRLIDMLKGKIGAGDLVLVKAS 443

Query: 467 KGHETVHIVT 476
           +G +   +V 
Sbjct: 444 RGMQLEEVVK 453


>gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei 53G]
          Length = 452

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLNAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
 gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
          Length = 457

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 170/459 (37%), Gaps = 43/459 (9%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 15  SIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVP 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                    ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I +
Sbjct: 75  ------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVE 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +    +  G  +                              V  + +  +     +  
Sbjct: 129 TTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIEVL 175

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K      TN+G  HI+Y  +++    AK+ +   L P            + + ++ 
Sbjct: 176 SKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLL 230

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N + 
Sbjct: 231 GNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK  
Sbjct: 290 AMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTF 348

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDD--NPRSEDPEKI 428
             +  +     +V     +       +  + A     D      +  D      E  E  
Sbjct: 349 MHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESK 408

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
             +      G +   +  E++ TA +  +   + ++V G
Sbjct: 409 IGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 441


>gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2846]
          Length = 457

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 172/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S            P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   + L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVNLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
 gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
          Length = 458

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 178/479 (37%), Gaps = 54/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       L+           + +   VS+D+R +Q G +FVA+ G   DGH +I
Sbjct: 1   MKLSQLKLDSAKTLVGG---------DAEFFCVSTDTRSLQPGDLFVALRGEHFDGHAYI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI +GA A+VV         +       P  VV +T + L   A+    +    ++ +
Sbjct: 52  AQAIEKGACAVVVD--------TVQAEIAVPQWVVKDTVRALGFIAANKRAEFEGAVVGL 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK+SV   ++ +C+++G +    G  +                I + + L  L  Q
Sbjct: 104 TGSSGKTSVKGMLEAVCRQAGPTVATAGNLNN--------------HIGVPQTLMRLEQQ 149

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V    S  G   +    I+       N+   H+    +  A    K  ++      
Sbjct: 150 AFAIVEAGTSGFGEIAYLTSLIQPEVALVNNVMPAHMAGFGSLDAIAQEKGDIYGG--SN 207

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQ---V 291
              A+I  DD Y++E + R         +          G    +   C   +       
Sbjct: 208 LRCAVINLDDNYAQEFLARNGGITTIGFTASPIQYEKNSGVDTLIYGECLTPDGMGCYSF 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + +EG  F     +PG+  V NAL AA   +A+G+   L+ + + +   V GR + V T
Sbjct: 268 DLVLEGNRFPVNLQVPGKHSVNNALAAASCAVALGVAHELIAKGVSQFQGVAGRMQRVST 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
                 I   Y     S+     N        ++VV   G     +  +   +G+ A   
Sbjct: 328 KCCHTLINDTYNANPGSMRA-AANYLAHAKHSVMVVGDMGELGSDELAQHFDLGRYAKSQ 386

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +        E  ++  A    G   F +K     A+ +A++  +  D +V+  KG
Sbjct: 387 KIKNLF----AVGELSKQTVAGFGEGATWFEDKV----ALASALQQQDLSDAVVLV-KG 436


>gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TW10509]
          Length = 452

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 457

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 148/393 (37%), Gaps = 30/393 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 15  SIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVP 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                     + P+++V++T   L   A++   +    ++A+TG++GK++    +  I +
Sbjct: 75  ------NPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVE 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +    +  G  +                              V  + +  +     +  
Sbjct: 129 TTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIEVL 175

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K      TN+G  HI+Y  +++    AK+ +   L P            + + ++ 
Sbjct: 176 SKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLL 230

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N + 
Sbjct: 231 GNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK  
Sbjct: 290 AMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTF 348

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +     +V     +       +  + A 
Sbjct: 349 MHMNSSGKPKYLVLADMLELGDLSTKLHQESAE 381


>gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
 gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
          Length = 470

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 175/473 (36%), Gaps = 45/473 (9%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +                              V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++        R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNIIGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVT 416
             +  +L+ +LK    +  +     +V     +       +  + A     D      + 
Sbjct: 348 NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLY 407

Query: 417 DD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
            D      E  E    +      G +   +  E++ TA +  +   + ++V G
Sbjct: 408 GDAMKAFGEVAESKIGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 454


>gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
 gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
          Length = 474

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYTPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 293

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 142/313 (45%), Gaps = 30/313 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T   Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 223

Query: 237 LLPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
           L           A++ ADDA S   ++        V++ G  Q        +    +   
Sbjct: 224 LGNSYHTSNPKMAVLNADDAES---VRMQTATAAHVITFGIKQQADFKASNIQITSHGST 280

Query: 291 VTISVEGKDFDFL 303
             ++    +F   
Sbjct: 281 FDLTTPVGEFTVK 293


>gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 455

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 144/411 (35%), Gaps = 36/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +FV I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  + +  +           +L V +T K +   A     K    ++ +
Sbjct: 54  GSAIEAGASATLWEAGHPNK------PEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +N +  P  I   K ++ +   
Sbjct: 108 TGSNGKTTTKDMVAAVLAK------RFNVYKTQANF--NNEIGVPMTILEMKPITEIL-- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G         +      T +G  HI++  ++    +AKM +  + L +
Sbjct: 158 ---VLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKIADAKMEI-TDFLQE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     + +RA        + G+                      + G D 
Sbjct: 214 DGEFIYNGDEPL---LAERAAKLSQDKSTFGFADSDSIHASDLRSTMHHSF-FKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+      G  I  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDGEIAAGLANFVPTANRMEWEK-GDCGEDIMS 328

Query: 361 D-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           D Y     +++ +  +   +     GR I V     +       +   +A 
Sbjct: 329 DIYNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E482]
          Length = 452

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQITDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus helveticus H10]
          Length = 455

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 165/473 (34%), Gaps = 39/473 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKDLNTTCEGDDKTVITSVAFDSRKITTGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VDN    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PKNITVIEVDNPLTAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSK------RFNVHKTQANFNNEIGVPM-------TILEMKPNT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +         T +G  HI++  ++    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEI-TDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+   A     + G++ +   +            T ++   + 
Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKA---TFGFRDEDT-VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   +     +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANRMEWEKGDVGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     GR I V G   +  +    +   +  D  D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKKSPELHAGLC-DTLDPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 + + +   +          +  +      I      +   D++V+ G
Sbjct: 389 VYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDIKPDDIIVLKG 441


>gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis 62]
          Length = 457

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 182/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 1   MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A               +    P+L V +    +   A+    K   N++
Sbjct: 54  FIESAMANGCQAAFWGQDL------VDVPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 108 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 164 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 214 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 270 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 328

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 329 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 388

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 389 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 439

Query: 465 AG 466
            G
Sbjct: 440 KG 441


>gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 457

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 172/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S            P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   + L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVNLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
 gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
          Length = 477

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 89/466 (19%), Positives = 163/466 (34%), Gaps = 38/466 (8%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            ++I   +  P+      I  +S DSR ++AG  F AI G++ DGH +   A+A GA  +
Sbjct: 8   ADMIAITAGRPVGNLPTGITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFAVANGAGLL 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV+         A  R   P++VV++    L   A     +    I+AVTG+ GK++   
Sbjct: 68  VVAEG----KLPALGRLTVPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKTTTKE 123

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++Q    SG     +               +  +   +   L+ + +     V     +
Sbjct: 124 MLRQALAPSGRVHAAV--------------ASFNNHWGVPLTLARMPADTEFGVFEIGMN 169

Query: 192 H-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H G  +  +  ++      T +   H+   +  +   +AK  +FE L       I+  D+
Sbjct: 170 HSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGL-EDGGFVILNRDN 228

Query: 251 AYSKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A  +++ + A + G   +L+ G   K    L    +      +   + G+  +    +PG
Sbjct: 229 AQFEQLEEAAQDQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIPG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVDYAHT 365
                NA+   G     G +     E L  L  V     R      +     I   Y   
Sbjct: 289 RHIADNAMAVLGAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNAN 348

Query: 366 SNSLE---MILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             S+     +L    T   GR + V       G    Q    + G +     +   +   
Sbjct: 349 PASMRAAIAVLAETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWL--- 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E    +R  +   +           A   A++ +   D L+V
Sbjct: 406 --AGEAMAALRDALPDSVTVIWFPTTAELA-DFALQWVQPGDALMV 448


>gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
 gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
          Length = 473

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 178/473 (37%), Gaps = 47/473 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L+  ++   M       + VS DSR +  G IF  I G+  DGH F  QA  +GA 
Sbjct: 6   DKKALVAAINGVVMGSMPETFSGVSIDSRTLAEGDIFFCIKGHHLDGHDFAAQAYERGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V + + L+D       + P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLIV-AEHRLRDMKKI---SAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVE 188
              ++Q    +G     +               +  +   +   L+ +          + 
Sbjct: 122 KEALKQALAMTGNVHANL--------------ASLNNCWGVPLTLARMPIESDYGIFEIG 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +     +  +  +       T++   H+ + +  +    AK  +FE L  ++  AI+ A
Sbjct: 168 MNHRDEIRPLVKLVCPHVALITHICAGHMGFFKNLEEIAKAKAEIFEGL-DEKGIAILNA 226

Query: 249 DDAYSKEVMKRAHNAGCR-VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           D  +   ++++A   G + +LS G  +      + +  + ++  + + +  +D +     
Sbjct: 227 DSDFFSYLVQKAKKCGVKNILSFGESKNADYQARDIRLLTDRSSMIVRIRERDREVQIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSAL---VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
           PG   V N+L     C A+G++         H         R+    +N     +  + Y
Sbjct: 287 PGRHIVQNSLGVIAACDAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESY 346

Query: 363 AHTSNSLEMILK---NIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
                S+   L+          GR I +       G   ++  R ++  I L  A+   +
Sbjct: 347 NANPASMRAALELLATGPVGEEGRRIAILGDMLELGEYSEKLHRDLIKPIRLSGANPVFL 406

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLVV 464
                  E  + + +++  G+          E I   + +L    +  D+L+V
Sbjct: 407 -----FGEAMKSLVSDLSAGVKVHY-----AENIEKILSLLLAEISSGDLLMV 449


>gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
 gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
          Length = 476

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 95/453 (20%), Positives = 168/453 (37%), Gaps = 45/453 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F+AI G++ DGH ++  A+  GA   +V      +D    +  +
Sbjct: 27  ITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAAALEAGASLALV-----AEDSLGDLPDD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VVD+  + +         +    I+AVTG+ GK+     ++     SG     +  
Sbjct: 82  GRYVVVDDPLEAMRALGVAARARTNARIVAVTGSVGKTGTKEALRLALAPSGKVHASV-- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                        +  +   +   L+ + +        +  +  G     +  ++     
Sbjct: 140 ------------ASFNNHWGVPLTLARMPADTDFGVFEIGMNHAGEITPLVQMVRPHVAI 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-V 267
            T +   HI++ ++ +    AK  +F  L P +  AI+  D+     +   A  A  R V
Sbjct: 188 ITTVEAVHIEFFESVEKIAQAKAEIFNGLEP-DGVAILNRDNKQYDLLRFLAATAAVRNV 246

Query: 268 LSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            + G  G +  HLK   A  +   V  S+ G+D  +    PG   V N+L        +G
Sbjct: 247 QTFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSLAVLTAVADLG 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVD--YAHTSNSLEMILKNIRTIT--- 380
            D       L  +    GR E    +  GG +  +D  Y     S+      +   T   
Sbjct: 307 ADLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAFSVLAQATLGG 366

Query: 381 SGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           SGR I V       G D DQ    + G I     D       +          A +   +
Sbjct: 367 SGRRIAVIGDMRELGTDADQLHAELEGPIREAAIDRVFCAGPH---------MAALWDKL 417

Query: 437 PGFIEKGNRIEA---IRTAIEMLNKQDVLVVAG 466
           P  ++  +R EA   I   ++ +   DV+++ G
Sbjct: 418 PDDVKAHHREEAKDLIELLLKDVQPGDVVMIKG 450


>gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
 gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
          Length = 450

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 95/459 (20%), Positives = 171/459 (37%), Gaps = 33/459 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E    L +  M   + + + V SDSR+I AG +FVA+ G   DG+ F  +A+  GA A
Sbjct: 4   LSEAAAALGVQHM-GADVQFSSVGSDSRNIVAGQLFVALKGANFDGNAFAQEALELGAAA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS A    +         P +VV +TR  L   A     K    ++AVTG++GK++  
Sbjct: 63  VLVSDASVQAE---------PRIVVADTRLALGELAKYWRQKFAMPVVAVTGSNGKTTTK 113

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I           G  +++ +   +       P+ L   L    +     V +  +
Sbjct: 114 EMLSAILS------VVAGAKASVHATYGNLNNDIGVPLTL---LKMQPAHQYAVVEMGMN 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G   +     +       N G  HI    +++    AK  +F  L   +  A+I AD 
Sbjct: 165 HLGEIDYLTHIAQPDVALINNAGIAHIGELGSRENIAKAKGEIFAGL-KSDGVAVINADS 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            Y+     ++ N   ++++ G +       +         V ++    +      + GE 
Sbjct: 224 DYAYYW--KSLNPHRKIVTFGLKNPADVSARYQENDGYASVVLATASDEVSVQLNVQGEH 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
            + NAL A     A+G+    +   L     V GR E       G  +  D Y    +S+
Sbjct: 282 NISNALAAGATAYALGVSLNDIGRGLASFTGVYGRLER-KAGINGAVVIDDTYNANPDSM 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +  +  +  G+ I+V G  G+     + +  ++    A  A +T          +  
Sbjct: 341 KAAINVLAKLA-GKKILVLGDMGELGADAKSMHAEVGA-YAKAAGLTTLYCLGNLSVETA 398

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAI--EMLNKQDVLVVAG 466
                G   F       EAI  A+   +      ++V G
Sbjct: 399 RSFGAGAEHFSSP----EAIAQAVLPALAQ-GTTVLVKG 432


>gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 451

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 168/450 (37%), Gaps = 39/450 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            + E +I  V+ DSRH++   +FV   G   DGH F+ QA+  GA A        + D  
Sbjct: 20  AYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKSGAGASFYEKGQDISDSI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  PI+ VD+T   L   A          ++ VTG++GK++    ++ +       
Sbjct: 80  QG-----PIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDMIESVLHTEFRV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LQLDKDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    +++    AK  +   L   +   I   D+   K  
Sbjct: 175 LLSKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KSDGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           ++   NA  +++SVG   +   + KV        +   +  K+  +  P+ G   + NA 
Sbjct: 234 VENVKNA--KLVSVGLNHENTLVCKVE-NSKNDGIAFMINNKE-HYELPILGIHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+D   + +++  + +   R E   T+++   I   Y  +  S++  +  +
Sbjct: 290 IAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDTL 349

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            +  +GR I+V     +  +  + +   +   L +  I T       D + I       +
Sbjct: 350 -SHMNGRKIIVLADSLELGENSQRMHEDVGTYLDNKGIHTLL-TYGNDAKFISRTGGQFV 407

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  ++ E       +L   D +++ G
Sbjct: 408 EDVAYFSDKNELTHYLKSILQPDDKVLIKG 437


>gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
          Length = 458

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 100/450 (22%), Positives = 179/450 (39%), Gaps = 33/450 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  +S DSR +Q G+++ A+ G + DGH F+PQA + GA   +VS   +  +  A   +
Sbjct: 11  DLTGLSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAA 70

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ VD+  + +S  A+         I+ VTG+ GK++  S +  +   +  +    G
Sbjct: 71  HAAVVKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLASAFEADCTKG 130

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +           T PS   L           V  + ++      D  R+   +   G 
Sbjct: 131 NFNNELGMPYTLLQTEPSCEVL-----------VLEMGMDGLGQIADLARIA--RPKYGV 177

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCR 266
            TN+G  H++   T+     AK  + E L   E  A + AD  Y+  +++  RA   G R
Sbjct: 178 ITNVGVSHLERLGTRDNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGIR 237

Query: 267 VLSVG--YQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           ++      +   ++   +      +   T++  G+       + G   V NA  AA + +
Sbjct: 238 IVRFDGTAENSDVYATDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVGL 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TS 381
             GI    V   L  +    GR + +  +SRG  ++ D Y  +  S+   L  + +   S
Sbjct: 298 EFGIALDQVAAALSGVEPESGR-QALKRSSRGFLVFDDAYNASPESMAAALNVLASFSAS 356

Query: 382 GRIIVVFGCGGD---RDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHG-- 435
           GR I V G  G+    +       GK A     D+ +      R      I      G  
Sbjct: 357 GRRIAVLGDMGELGSAEVEGHINTGKAAAQAGIDMLVCVGAMSRY-----IADAARKGGM 411

Query: 436 -IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   IE  +   A  T +++    DV++V
Sbjct: 412 AVKSVIEVADADAAATTVLDIAQPGDVVLV 441


>gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 57-2]
          Length = 452

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAESQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVL 388


>gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 453

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 157/429 (36%), Gaps = 31/429 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   +    ++  +  ++ VS+D+R I +G +F+A++G   D H FI QA+ 
Sbjct: 1   MISLTLAEIARAVG-GELKGEDISVSSVSTDTRTITSGTLFIALIGENFDAHDFIEQAVI 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++VS    +          TP ++V++TR  L    S ++       +A+TG+ G
Sbjct: 60  KGAAALIVSQKLQIT---------TPHILVEDTRIALGKLGSIVHQLCKTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I  + G   F      T  +F  D  +           L          +
Sbjct: 111 KTTVKEMLTSILSQKGQVLF------TQGNFNNDIGVP-------LTLLRAKPEDDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +        N+   H++   +      AK  ++  L    + A+
Sbjct: 158 ELGANHIGEIDYTTRLVNPDVALVNNVAAAHLEGFGSIDGVMQAKGEIYNGL-KSGAVAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           I  D    +       +   + +S+           +      +    ++    +     
Sbjct: 217 INLDSNGGQYWQDVLADKTVKTVSMNDSKADYFATDIQLNERGEASFIMTTPIGECVIQL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  V NAL A  L +  G     V   L +L  V  R E +  N +   I   Y  
Sbjct: 277 SLVGQHNVANALSATSLALEFGASLEDVKSGLNQLTKVSARAEVIELNKQIRLIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRS 422
           +  +++  +  +      R +++       ++       +G+ A       ++T      
Sbjct: 337 SVPAMKAAIDLLSNYRGKRWLILGNMAELGEESLALHRQVGQHAAPFRFDYVLT----YG 392

Query: 423 EDPEKIRAE 431
            D + I  E
Sbjct: 393 ADAKVISEE 401


>gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 464

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 141/412 (34%), Gaps = 29/412 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          V
Sbjct: 112 KTTVKEMTAKILQKMTACEDEV--LYTFGNLNNDLGVP-------MTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A   Y  +  K       +  S              + V       + T+     + +
Sbjct: 223 NQA--FYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   
Sbjct: 281 INLPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDT 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           Y    +S++  +  ++   + RI  V       D             +AD  
Sbjct: 341 YNANVDSMKSAVSVLKNYPAFRIFAVGDMAELGD-----ESEACHQQVADFV 387


>gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
 gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
          Length = 468

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 96/453 (21%), Positives = 160/453 (35%), Gaps = 27/453 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +++D+R +QAG +FVA+ G K DG  F   A+  GA A+++    S        R +
Sbjct: 28  FAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRMS 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T       A     K    ++AVTG++GK++            G        
Sbjct: 88  GAVIGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRG-------- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +  +               L          V +     G             G  
Sbjct: 140 -----AVCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H++   + +    AK  L   + P     I+ ADDA    +  +A + G R+L+
Sbjct: 195 TNVGETHMELLGSIENIARAKAELVAAIAP-GGIVILNADDARVVAMRAQAAD-GVRILT 252

Query: 270 VGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G +    I  + + +  N+ +  ++  G+  D+  PL G   VYNAL A     A+G+ 
Sbjct: 253 YGIRAEADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNALAALAAGFALGLS 312

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV- 387
              +   L +L     R+E     +    I   Y  +  S+   L+    +  GR I V 
Sbjct: 313 PQEMQAGLSRLAPPKMRYEVHHVGAWTF-INDAYNASPASMRAALETTARLYPGRRIAVL 371

Query: 388 ---FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
                 G    +G R +    A +   + I   D  R      I                
Sbjct: 372 GDMLELGAASAEGHRSVGRTAAAEGFAVVITYGDEARR-----IYEAAAAAGCLCRHAAT 426

Query: 445 RIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
             EA      ML   D ++  G +G    HI+ 
Sbjct: 427 HEEAANLLRGMLADGDTVLFKGSRGMRMEHIME 459


>gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2137]
          Length = 474

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
 gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
          Length = 473

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 97/489 (19%), Positives = 189/489 (38%), Gaps = 50/489 (10%)

Query: 6   LIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I+K    + +    ++   Q     I  V +DSR IQ G +FV IVG K DGH F+   
Sbjct: 1   MIHKSLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESV 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A GA A      +        + ++ P++ V++T K L   A+    +    ++ +TG+
Sbjct: 61  LAGGAGAAFWQRDHQ------PVPADLPLIFVEDTLKALQSLAAAYLSESRAKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V   V  + +           T  +     +       P+ +   L+      + 
Sbjct: 115 NGKTTVKDMVSALLE----------TTYNVHKTQGNYNNHIGLPLTV---LAMKEDTDII 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S     +   +  +      TN+G  H+    +++    AK+ +   + P    
Sbjct: 162 VLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREEIARAKLEIISGMKP-GGL 220

Query: 244 AIIYADDAYSKEVMKR---AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            I + D+   ++V+         G R  + G Q            H +  +  S      
Sbjct: 221 LIYHGDEPLIRQVLAEEATVKPEGLRTFTFGNQDTNDDYPTGLMFHARGIIFTSSRHAGE 280

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  PL G   V NAL A  +   +GI    +      L +   R E V T + G  +  
Sbjct: 281 GFSLPLLGRHNVVNALAAMAVATHLGIGDEAIRSGFAHLKLSSMRIEAVET-AFGVTVLN 339

Query: 361 D-YAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
           D Y  +  +++  +  +  +    R I V G     G R++     +G+ ++ D AD+  
Sbjct: 340 DAYNSSPTAVKAAVDVLGDMKGYRRRIAVLGDMLELGQREESFHAEIGEYLSPDNADLVF 399

Query: 415 V-------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
                   T +  ++  PE             +   ++ + I   +E + ++D+++V A 
Sbjct: 400 TYGPLSLHTANKAKARFPEG----------AVLSFTDKEKLIEALLEQVTEKDIVLVKAS 449

Query: 467 KGHETVHIV 475
           +G    H+V
Sbjct: 450 RGMRLEHVV 458


>gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 466

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 143/381 (37%), Gaps = 25/381 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N VS DSR I+ G ++ A+ G + DGH FI +AI +GA A+V S      DF  +   + 
Sbjct: 27  NGVSIDSRTIKKGEVYFAMQGARYDGHDFIKEAINKGAAAVVCSKD--KIDFVKSFPDSV 84

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILA-VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I+  ++T   L  FA     K     +A +TG++GK++    +  I  R G +    G 
Sbjct: 85  SIIKTNDTLISLGEFAKSYRTKFKSIKIAGITGSNGKTTTKEILVSIFNRKGRTLSNKGN 144

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                       +  S        +  S  G  +   D +   AG  
Sbjct: 145 FNNRIGIP-------------LSIFNLTSDIEYAVFEMGTSLRGEIKILSDILNPDAGII 191

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H++   + +  F  K  LF+  + +    +I  DD +   +M        ++++
Sbjct: 192 TNVGFSHLETFISPKGVFEEKKVLFDN-VKETGFIVINNDDEF---LMTAPQYVSRKIIA 247

Query: 270 VGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                   +  K +    NK    I  +G       P  G F V NAL A    I  G  
Sbjct: 248 FALDVAADVCAKNIKLYSNKMDFEIFYKGTSVKIAMPAKGRFNVSNALAAVACAIGFGFS 307

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   +E       R E + T +    I   Y    +S++  ++ +    SG+ I + 
Sbjct: 308 LDEIKCGIENFMPPKMRMETLVTGTDVVLINDAYNANPSSMKKAIQAVLQSYSGKKINLV 367

Query: 389 GCGG----DRDQGKRPIMGKI 405
                   D+       +GK 
Sbjct: 368 LGDMLELGDKSADYHSELGKF 388


>gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes 220]
          Length = 457

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 148/393 (37%), Gaps = 30/393 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 15  SIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVP 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                     + P+++V++T   L   A++   +    ++A+TG++GK++    +  I +
Sbjct: 75  ------NPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVE 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +    +  G  +                              V  + +  +     +  
Sbjct: 129 TTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIEVL 175

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K      TN+G  HI+Y  +++    AK+ +   L P            + + ++ 
Sbjct: 176 SKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLL 230

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N + 
Sbjct: 231 GNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK  
Sbjct: 290 AMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTF 348

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +     +V     +       +  + A 
Sbjct: 349 MHMDSSGKPKYLVLADMLELGDLSTKLHQESAE 381


>gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 454

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 173/473 (36%), Gaps = 46/473 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  K+     N   + P +  ++++  + +DSR  +AG +FV I G + D H FI Q
Sbjct: 1   MKNLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            + +   A +       + F        P ++V ++   +   A     +    ++ +TG
Sbjct: 61  VMEKAVLATLSEKDLGEKPF--------PYILVKSSLIAVKDIAEFYLKQLQIPVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T  +F  +          L   +  L  +  
Sbjct: 113 SVGKTSTKEVIASVLAQ------KYNTLKTQGNFNNEL--------GLPLTIFRLRDEHE 158

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     S   + HRL  I +      TN+G  H+++ +++     AK  +F+ L   +
Sbjct: 159 MAVLEMGISDFGEMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYL-QSD 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD     V +           V         K            I    + F 
Sbjct: 218 DHIILNGDDDKLVTV-QETKGIKPVFFGVENHQGIWADKIKPEGLKGISCCIHAGEESFS 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L P+PG+  VYNAL A  + +  G+    + + +E L  V GRF  +   +    +  D
Sbjct: 277 VLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHII--EAPNYTVIDD 334

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S++  L  +      ++ ++   G    D  +  + +    A    D+ +   
Sbjct: 335 CYNANPISMKASLDVLTDALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLC-- 392

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAI-----EMLNKQDVLVV 464
                    ++  ++         K   R  A + A+     E+L K D ++V
Sbjct: 393 -------VGELSKDMADAAGEVNSKTQVRHFADKEALMKELPELLEKGDTVLV 438


>gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
 gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
          Length = 457

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 172/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S            P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  +
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNI 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   + L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVNLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0043]
 gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF]
          Length = 474

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 457

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 1   MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 54  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 108 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 164 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 214 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 270 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 328

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 329 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 388

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 389 VFLYGSEMAYLADKLQETYTPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 439

Query: 465 AG 466
            G
Sbjct: 440 KG 441


>gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 464

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 140/412 (33%), Gaps = 29/412 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          V
Sbjct: 112 KTTVKEMTAKILQKMTACEDEV--LYTFGNLNNDLGVP-------MTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L  K     
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGL--KAGGKA 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           I     Y  +  K       +  S              + V       + T+     +  
Sbjct: 221 IVNQTFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIK 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   
Sbjct: 281 INLPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDT 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           Y    +S++  +  ++   + RI  V       D             +AD  
Sbjct: 341 YNANVDSMKSAVSVLKNYPAFRIFAVGDMAELGD-----ESEACHQQVADFV 387


>gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           L20]
 gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 464

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 148/416 (35%), Gaps = 27/416 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          V
Sbjct: 112 KTTVKEMTAKILQKMTACEDEV--LYTFGNLNNDLGVP-------MTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L      AI
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGL-KAGGKAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +     Y  +  K       +  S              + V       + T+     + +
Sbjct: 222 VNQA-FYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   
Sbjct: 281 INLPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDT 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           Y    +S++  +  ++   + RI  V      GG+ +   + +   +     D+ +
Sbjct: 341 YNANVDSMKSAVSVLKNYPAFRIFAVGDMAELGGESEACHQQVADFVREANLDLVV 396


>gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
 gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli AA86]
 gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
          Length = 452

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANNDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVL 388


>gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4000]
 gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0017]
 gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0027]
 gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4244]
 gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0312]
 gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1302]
 gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1341]
 gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309B]
 gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309A]
 gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1467]
          Length = 474

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 464

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 141/412 (34%), Gaps = 29/412 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          V
Sbjct: 112 KTTVKEMTAKILQKMTACEDEV--LYTFGNLNNDLGVP-------MTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A   Y  +  K       +  S              + V       + T+     + +
Sbjct: 223 NQA--FYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   
Sbjct: 281 INLPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDT 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           Y    +S++  +  ++   + RI  V       D             +AD  
Sbjct: 341 YNANVDSMKSAVSVLKNYPAFRIFAVGDMAELGD-----ESEACHQQVADFV 387


>gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15]
          Length = 452

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVL 388


>gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0012]
          Length = 474

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVESSNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1342]
          Length = 474

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 182/474 (38%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVINEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAI-E 404

Query: 417 DDNPRSEDPEKIRAEIIH-GIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
           +      +   +  ++    +P  I    K  + E I    ++L  +D++V+ G
Sbjct: 405 EVFLYGSEMAYLADKLQETYVPANIHSFKKEEKNELIEAVKKVLQPEDMVVLKG 458


>gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0630]
          Length = 474

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 480

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 168/478 (35%), Gaps = 41/478 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+I  +   P    +  RK+   V  DSR ++ G +F A+ G + DGH F  +
Sbjct: 1   MIALSLAEIIGIVGGQPHDIPDADRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAAR 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA A++ +         A + S    +VV + +  L   A  +  +    ++A+TG
Sbjct: 61  AVADGAVAVLAARPVPAAAADAPVPS----IVVPDVQAALGALARAVVLRLDATVVALTG 116

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R G + +  G  +              +  +L            
Sbjct: 117 SAGKTSTKDLIAQLLRRHGPTVWTPGSLNNEIGLPLTAMSADETTRHL------------ 164

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             + + A   G  ++  D      G   N+G  HI     ++A   AK  L E L    +
Sbjct: 165 -VLEMGARGKGHIRYLTDLTPPRLGLVLNVGTAHIGEFGGREAIAEAKGELVEALPAAAE 223

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGK 298
              A++ ADD   + +  R      R +  G         +   + +  +   T+     
Sbjct: 224 GGVALLNADDPLVRAMATRTK---ARTVLFGEAADADVRAENVRLADGGRPSFTLHTPTG 280

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    L GE  V NAL AA +   +G+    +   L +   +      V     G  +
Sbjct: 281 CSEVTMRLYGEHHVSNALAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERRDGVTV 340

Query: 359 YVD-YAHTSNSLEMILKNIRTIT------SGRIIVVFGCGGDRDQGKRPIMGKIA----- 406
             D Y     S+   L+ +  +        GR   V G   +  +        +      
Sbjct: 341 VNDAYNANPESMRAALRALVAMGTAGQAEGGRTWAVLGPMAELGEESLAEHDAVGRLAVR 400

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+++ +  V        D               +   +   A+      L   DV++V
Sbjct: 401 LNVSKLVAVGGQEAAWLDMGAKNEG--SWGEESVHVSDVRAAVDLLRSELRPGDVVLV 456


>gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2141]
 gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0645]
          Length = 474

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|78221629|ref|YP_383376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
 gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
          Length = 470

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 159/447 (35%), Gaps = 38/447 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+DSR +Q G +FV + G + DGH ++  A  +G + ++    +  ++    +   
Sbjct: 25  VEGVSTDSRTVQPGELFVPLRGERFDGHDYLGAACDRGVQVVLAEHQWLEKN---ELPPG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              + VD+T + L   A     +    ++AVTG++GK++    +  I  ++G      G 
Sbjct: 82  VSAVAVDDTLEALGDLACFHRQRFAIPVVAVTGSNGKTTTKEMLAAILGQTGPGLKTEGN 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + +                    L   +S     + +  S+ G      +  +   G  
Sbjct: 142 LNNLIG-------------LPQMLLRLDNSHRWAVLEMGMSAFGEIDRLAEIARPDVGII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN    H++   + +    AK  LF  L P E  A+  ADD     + +     G R +S
Sbjct: 189 TNAYPAHLETLGSVEGVARAKGELFLRL-PAEGCAVFNADDPL---IARCPSPDGVRRVS 244

Query: 270 VGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G     +  + V  +  N Q+  + +  +         G   + NAL AA     +G+ 
Sbjct: 245 FGLHNADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIANALAAAAAAHVLGVP 304

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIV 386
           +  +   L +      RF        G  I +D  Y     S+   L  +R I +GR  V
Sbjct: 305 TETIARGLGEFSPYARRFNLEEV---GDVILIDDSYNANPASMAAALTTLREIRAGRRAV 361

Query: 387 VFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFI 440
                     +  +     +G +A    D   V            + A  + G      +
Sbjct: 362 AVLGDMLELGEGAEEAHRQLGLLAATCVDRLYVM-----GGMAGIVAAGALEGGLADDAV 416

Query: 441 EKGNRIEAI-RTAIEMLNKQDVLVVAG 466
                 +AI           D ++V G
Sbjct: 417 TVATSHDAIVADLRRTTAAGDFILVKG 443


>gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 459

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 108/485 (22%), Positives = 193/485 (39%), Gaps = 67/485 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++      +  N++     QW++ ++  VS DSRH++ G +FV + G   DGH ++
Sbjct: 3   MKLAEIAKAINAQ--NEIE----QWKDIEVTSVSFDSRHLEKGALFVPLQGAH-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A + +S + L +      S+ P+LVV +  K L         K    ++AV
Sbjct: 56  ETAFTNGAAATLWASDHELTN------SDHPVLVVTDPLKALQELGKYYLRKINPIVVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I         Q+  T T ++F  +  +           L+  ++ 
Sbjct: 110 TGSNGKTTTKDMIASILST------QLNVTKTYANFNNEIGVP-------VTLLNMEANT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G        +       T +G  HI++  T+    +AKM +   L  K
Sbjct: 157 EVVVVEMGMDRFGQLDFLSKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGL--K 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +Y  D     + +RA N   +    G Q    ++   V A     +  ++ E  D
Sbjct: 215 EDGLFVYDGDE--PLLNERAANITQQTTRFGRQLTDDLYATSVNAGSRSIEFKVN-EWPD 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ GE+ V NAL A  +   + I    +   L  + +   R E+  +   G +I 
Sbjct: 272 EQFTIPMVGEYNVNNALAAMAVAKRLHISPNHIKTALANVELTENRAEWFKSK-NGAQIL 330

Query: 360 VD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            D Y     + + +LK +  +   GR I V G   +  +    +   +A  +        
Sbjct: 331 SDVYNSNPTAAKQVLKTLAEMPVQGRRIAVLGDMLELGEAAPRLHASLAEQI-------- 382

Query: 418 DNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRT-----------AIEM-LNKQ 459
                 +P +I+      AE+ H      E+G    AI             A+E  L+  
Sbjct: 383 ------NPAQIQEVYLVGAEMAHLQAKLQEQGYPAAAIHYYQADQLDQLTAALEADLHPA 436

Query: 460 DVLVV 464
           D++++
Sbjct: 437 DMVLL 441


>gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 470

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 85/407 (20%), Positives = 160/407 (39%), Gaps = 32/407 (7%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++VDNT   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVP------NPPTDFPVILVDNTLLSLQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G          +       P  +   L+      V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLSNINGDFRQLTFGKSEAAEIYPLEIHAEAEGTSFVTNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+N + A      IGI+   +   L+K+     R E++ T S G RI  D Y
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKKMERSKSRLEWITTKS-GARILNDAY 347

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +L+ +LK    +        +V     +  +    +  + A 
Sbjct: 348 NSSPTALKTVLKTFMHMDSKGKPKYLVLADMLELGELSTKLHRESAE 394


>gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
 gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
          Length = 457

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 102/460 (22%), Positives = 172/460 (37%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++QGA A+V
Sbjct: 8   QLAQILQAKLIGDENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    S            P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 68  VQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLVGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   I L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYINLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6]
          Length = 457

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 1   MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 54  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 108 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 164 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 214 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 270 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKA-ANGAEI 328

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 329 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 388

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 389 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 439

Query: 465 AG 466
            G
Sbjct: 440 KG 441


>gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895]
          Length = 452

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 84/405 (20%), Positives = 148/405 (36%), Gaps = 26/405 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  +    +Q  +  I+ V++D+R +  G +FVA+ G + D H F   A   GA A++VS
Sbjct: 9   LAGILHGELQGADLTIDAVTTDTRKVTPGCLFVALKGERFDAHDFADNAKEGGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                         + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLDC---------DLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +                      L   +      + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLNNDYDYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++  L P    AI+ AD+    
Sbjct: 167 IAWTVGLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PVNGIAIMNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            +    +  + T+     D D L PLPG   + N
Sbjct: 226 NWQGIIGDRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGDIDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +A+G     +   L  L  VPGR   +  N     +   Y     S+   ++
Sbjct: 286 ALAAAALSMAVGATLDAIKTGLANLKAVPGRLFPIQLNDNQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +   R++VV      G + +     +         D  + T
Sbjct: 346 VLSEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDSVLST 390


>gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
 gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
          Length = 452

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 172/467 (36%), Gaps = 45/467 (9%)

Query: 15  INQLSIF---PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           ++QL++     +   +  I+ V++D+R +  G +FVA+ G + D H F  QA A GA A+
Sbjct: 6   LSQLAVILKGELHGADTDIDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGAGAL 65

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +VS    +         + P LVV +TR      A+ +  + P  ++A+TG+SGK+SV  
Sbjct: 66  LVSRKLDI---------DLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKE 116

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I    G + +  G  +                      L          + + A+ 
Sbjct: 117 MTAAILGECGNTLYTAGNLNN-------------DIGVPMTLLRLTPEHQYAVIELGANH 163

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G     +   +  A    NL   H++   +      AK  +F  L P    AI+ AD+ 
Sbjct: 164 QGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PANGIAILNADNN 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                     +      S            +    +  + T+     D D L PLPG   
Sbjct: 223 DWLNWQSVIGDRKVWRFSPNLATSDFSATNIHITSHGTEFTLRTPVGDVDVLLPLPGRHN 282

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL A+ L +A+G     +   L KL  VPGR   V        +   Y     S+  
Sbjct: 283 VANALAASALAMAVGAPLQAIKAGLAKLKAVPGRLFPVHLAENQLLLDDSYNANVGSMTA 342

Query: 372 ILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI----VTDDNPR--- 421
             + +  +   R++VV      G + +   + +         D  +    +++   R   
Sbjct: 343 AAQVLSEMPGYRVMVVGDMAELGDEAEACHQQVGEAAKAAGIDKVLSVGTLSEGISRASG 402

Query: 422 ----SEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                 D + + A +      H I   + KG+R  A+   +  L + 
Sbjct: 403 VGEHFRDKQAVIARLKTLINEHSIITLLVKGSRSAAMEEVVRALQEN 449


>gi|158834104|gb|ABW81857.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 145/294 (49%), Gaps = 10/294 (3%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TT S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH
Sbjct: 7   ENTTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYH 66

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKF 276
                Y  AK +LF     KE    I ADD   +  + +  +A        +   ++G++
Sbjct: 67  GDMARYEAAKWQLFSTHHAKEKI--INADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           +  K +        +       +   +  L G F V N L+A    +A+      ++  +
Sbjct: 125 LETKNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDR-PTVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447
           GKR +MG IA   AD  +VTDDNPR+EDP  I A+I+ G+      +   NR E
Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGLVXXXHAVVIHNRAE 297


>gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
 gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
          Length = 459

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 148/407 (36%), Gaps = 30/407 (7%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ K   E++  L   I    +R+  I  V  D+R I+ G +FV  VG   DGH F+ QA
Sbjct: 2   ILKKTVGEVVGMLDSTIHTDAFRDVVITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQA 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA A                 ++ P+++V++T   L   A +   +    ++A+TG+
Sbjct: 62  REMGAVATFWQKNVP------NPPTDFPVILVEDTLLALQEMAKKYIQEVKPKVIAITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  I + S    +  G  +                              V 
Sbjct: 116 NGKTTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVA 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P    
Sbjct: 163 VLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLSPSGIL 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                   Y + ++    +   R L+ G   +            +    ++    D +  
Sbjct: 223 IY-----PYEEALLLSHIDGDFRQLTFGKSQEAEIYPLAIHAEAEGTAFVTNWEPDLEIF 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ GE  V+NA+        IGI+   + + L  +     R E++ T   G RI  D Y
Sbjct: 278 VPIIGEHNVFNAMATMLAAREIGIEGEKIQKALRNMERSKSRLEWLTTK-NGTRILNDAY 336

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +L+ +LK    +     R  +V     +  +    +  + A 
Sbjct: 337 NSSPTALKTVLKTFMHMDSQGKRKYLVLADMLELGELSEQLHKESAE 383


>gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
 gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
          Length = 454

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 95/409 (23%), Positives = 152/409 (37%), Gaps = 37/409 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L       L         Q      + VS+D+R +  G +FVA+ G + DGH FI
Sbjct: 7   MSLRELTSAVQGRL---------QGANVAASGVSTDTRSLVPGSLFVALRGERFDGHAFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA  +GA A ++  A         I    P + V + R  L   A+    +    I+AV
Sbjct: 58  AQAREKGASAALLEQA---------INDPLPQIEVADARIALGQLAACWRQRFVRPIVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  +    G     +     +++                  L   +S 
Sbjct: 109 TGSNGKTTVKEMIASVL---GWREPVLATRGNLNN----------DIGVPLTLLELDTSH 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G  ++     +      TN G  H+D     +    AK  +F+  +  
Sbjct: 156 RFAVIEMGANRPGEIEYLSRLTRPQVALITNAGPAHLDGFGDLKGVARAKGEIFQG-MGS 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E  AI+ ADD         A      V+  G  +   +  + V A       T+      
Sbjct: 215 EGVAILNADDPCFSYWRDLAGE--LPVIGFGLSKSAEVTARHVVASTGSSCFTLITPAGK 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PLPG   V NAL A+   IA+G+D   +   L  L  VPGR +          + 
Sbjct: 273 AKIQLPLPGRHNVLNALAASAATIALGVDRQHLSASLAALSSVPGRLQIRRGIGGMRLLD 332

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             Y     S +  L+ +      R +V+  F   G+       IMGK A
Sbjct: 333 DTYNANPASFQAALELLAKFPGERALVLGDFAELGEEAASLHRIMGKQA 381


>gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
 gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
          Length = 454

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 87/473 (18%), Positives = 173/473 (36%), Gaps = 46/473 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  K+     N   + P +  ++++  + +DSR  +AG +FV I G + D H FI Q
Sbjct: 1   MKNLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            + +   A +       + F        P ++V ++   +   A     +    ++ +TG
Sbjct: 61  VMEKAVLATLSEKDLGEKPF--------PYILVKSSLIAVKDIAEFYLKQLQIPVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T  +F  +          L   +  L  +  
Sbjct: 113 SVGKTSTKEVIASVLAQ------KYNTLKTQGNFNNEL--------GLPLTIFRLRDEHE 158

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     S   + HRL  I +      TN+G  H+++ +++     AK  +F+ L   +
Sbjct: 159 MAVLEMGISDFGEMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYL-QSD 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD     V +           V         +            I    + F 
Sbjct: 218 DHIILNGDDDKLVTV-QETKGIKPVFFGVENHQGIWADEIKPEGLKGISCCIHAGEESFS 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L P+PG+  VYNAL A  + +  G+    + + +E L  V GRF  +   +    +  D
Sbjct: 277 VLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHII--EAPNYTVIDD 334

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S++  L  +      ++ ++   G    D  +  + +    A    D+ +   
Sbjct: 335 CYNANPISMKASLDVLTDALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLC-- 392

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAI-----EMLNKQDVLVV 464
                    ++  ++         K   R  A + A+     E+L K D ++V
Sbjct: 393 -------VGELSKDMADAAGEVNSKTQVRHFADKEALMKELPELLEKGDTVLV 438


>gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes J0161]
          Length = 457

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 87/461 (18%), Positives = 170/461 (36%), Gaps = 43/461 (9%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
             SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A      
Sbjct: 13  DSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKN 72

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                      ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I
Sbjct: 73  VP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAI 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +    +  G  +                              V  + +  +     +
Sbjct: 127 VETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIE 173

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K      TN+G  HI+Y  +++    AK+ +   L P            + + +
Sbjct: 174 VLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETL 228

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +    N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N 
Sbjct: 229 LLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNT 287

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           + A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK
Sbjct: 288 MAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLK 346

Query: 375 NIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDD--NPRSEDPE 426
               +  +     ++     +       +  + A     D      +  D      E  E
Sbjct: 347 TFMHMDSSGKPKYLILADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAE 406

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAG 466
               +      G +   +  E++ TA +  +   + ++V G
Sbjct: 407 SKIGQ------GKVHHFDTKESLETALLSEIKGNEWILVKG 441


>gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 459

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 177/471 (37%), Gaps = 41/471 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           ++++      +++    I P      +  +I    +D+R ++  ++F+ +VG + DGH F
Sbjct: 1   MKNMTLAHVAQVVKGQLILPEGREALKNSEIQGAVNDNRKVEKDFLFIPMVGARVDGHDF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A ++GA A +                + P ++V++T+  L   A+    +    ++ 
Sbjct: 61  IEDAFSKGALASLSERKLE--------NVSGPYIIVEDTKLALKQIATDYRMQLNIPVIG 112

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V G+ GK+S    +  +         +     T  +F                       
Sbjct: 113 VIGSVGKTSTKEMLSSVLAT------KFNVLKTEGNF-------NNEIGLPLTICRIKDE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  V +  S  G      D  K      TN+G+ H+++ +++     AK  +FE  +P
Sbjct: 160 HQVAVVEMGISDFGEMHRLGDIAKPDYVVMTNIGQCHLEFLKSRDGILQAKTEVFEH-MP 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
           K    I+  DD      +  A   G   +  G  G+ +    + A      +  I++ G+
Sbjct: 219 KNGTVILNGDDDK----LINADTLGLNKIFYGLNGQEVSASDIVAEGMTGTRAVINLFGE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            F+    LPG   V NAL AA +   +G+ +  + + LEK   + GR   +    R   I
Sbjct: 275 SFEATIQLPGTHNVMNALAAAAVGKVLGLSNEEIKKGLEKASTIAGRNNVIEV--RDITI 332

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIV 415
             D Y     S++  ++ +       I V+   G   D ++     +G+   D     + 
Sbjct: 333 IDDCYNANPVSMKASIEVLGKAPGRTIAVLGDMGELGDDERQLHYEIGQTLEDNHIGYVF 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEA-IRTAIEMLNKQDVLVV 464
           T      +  E+I   +              +EA +   + ++   D ++V
Sbjct: 393 T----VGDLSEEINNSLSQKNSSCMAHHYTNVEAMLEDLLPIIRGGDTILV 439


>gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
 gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
          Length = 459

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 90/411 (21%), Positives = 161/411 (39%), Gaps = 36/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+Q        E+   L +  +P QW E  +  V  DSR +  G +FV I G + DGH 
Sbjct: 1   MKMQ------LSEIARALGVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI QAI  GA A +       +D   T  ++ P + V++    L   A     K    ++
Sbjct: 54  FIEQAIQAGAVATLW-----AKDHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GK++       +         +     T ++F  +  +           L   +
Sbjct: 109 AITGSNGKTTTKDMTAAVLAT------EFNVVKTEANFNNEIGVP-------ITILGMNA 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  V  V +     G      + ++      T +G  HI++ +T+    +AKM + + L 
Sbjct: 156 NTEVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGL- 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEG 297
            KE    IY  D     + +RA          G + +  +    V     +     +++ 
Sbjct: 215 -KEDGCFIYDGDE--PLLAERAKAVDVEQRMFGMKNENDVFASDVAGTDTETSFKTNLD- 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   P+ GE+ V NAL A  +     +  A     L   ++   R E++    +G R
Sbjct: 271 PEVEVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNRTEWLK-GRQGER 329

Query: 358 IYVD-YAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           I  D Y     + + +L     T  +GR  VV G   +  +    +  ++A
Sbjct: 330 ILSDVYNSNPTAAKAVLNSFAHTKKTGRRFVVLGDMLELGENADQMHAQLA 380


>gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Enterococcus sp. 7L76]
          Length = 457

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 182/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 1   MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 54  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 108 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 164 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 214 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 270 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 328

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +  ++A  LA  AI  
Sbjct: 329 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEE 388

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 389 VFLYGSEMAYLADKLQETYAPTNIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 439

Query: 465 AG 466
            G
Sbjct: 440 KG 441


>gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
 gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
          Length = 466

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 142/378 (37%), Gaps = 11/378 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
             Q+          +   VS+DSR ++ G +FVA++G + DG  F+  A  +GA A ++ 
Sbjct: 7   AAQVLHVDWSGSNVRFTGVSTDSRTLKQGELFVALIGERFDGGKFVSNAKEKGAVAAMLQ 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                    A +  + P++ V ++R  L   A+    +    ++ VTG++GK++    + 
Sbjct: 67  KDAE----PAGLSGDFPVIRVQDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTKEMIA 122

Query: 135 QICQRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            I + +   +  I  P   + + A +       P  L   L          + +  +  G
Sbjct: 123 AILRVAASDNAIINDPAERVLATAGNLNNDIGVPQML---LRLRRQHQYAVIEMGMNHLG 179

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +     +      TN G  HI+   + +A   AK  +   L  +   AI  ADD Y+
Sbjct: 180 EIAYLTRLARPNIAVITNAGAAHIEGLGSVEAVARAKAEILVGL-DQSGTAIFNADDRYA 238

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               + A      ++  G   K               + + +     +     PG   +Y
Sbjct: 239 SLWRECAGAR--EIIDFGLTEKARVSAVYRLGRLVNTLQLRLPDATVEVKLQAPGVHNIY 296

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA +  ++GI    ++  LE+   V GR +          I   Y     S+   L
Sbjct: 297 NALAAAAVAWSLGIKKEWIVAGLERFQSVHGRLQKKCGLHHAVLIDDTYNANPESVRAAL 356

Query: 374 KNIRTITSGRIIVVFGCG 391
             +      +I+V+   G
Sbjct: 357 AVLAAAEGKKILVLGDMG 374


>gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)]
 gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces lividans TK24]
 gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
 gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           coelicolor A3(2)]
 gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
          Length = 471

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 163/473 (34%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR    G +FVA VG + DGH F  +
Sbjct: 1   MITLSLAEIAEVVGGRMHDIPDASAEVTGPVVRDSREAGPGSLFVAFVGERADGHDFAAR 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A++ S                P +VVD+ +  L   A  +  +    ++A+TG
Sbjct: 61  VVEAGAVAVLGSRPV-----------GVPAIVVDDVQAALGALARHVVRRLGTTLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R   + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLRRKAPTVFTPGSMNNEVGLPLTALTATDETKFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--K 240
             + + A   G  ++  +      G+  N+G  HI     ++    AK  L E L P  +
Sbjct: 158 -VLEMGARGIGHIRYLTELTPPKIGAVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ-QVTISVEGK 298
              AI+ ADD   + +  R      +V+  G  G   +  + V      Q   ++     
Sbjct: 217 GGAAILNADDPLVRAMASRTK---AKVILFGESGEADVRAENVRLTDTGQPSFSLHTPSG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  +
Sbjct: 274 ASDVTMRLYGEHHVSNALAAAAVAHELGMSADEIATALSEAGSLSRWRMEVTERPDGVTV 333

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIA-----LDLAD 411
             D Y     S +  L+ +  +  GR    V G   +           +      L+++ 
Sbjct: 334 VNDAYNANPESTKAALRALVAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSK 393

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  V     R                  +   +   A+      L   DV++V
Sbjct: 394 LVAVGGREARWLQLGAYNEG--SWGEESVHVSDAQAAVDLLRSELRPGDVVLV 444


>gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
 gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
          Length = 458

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 146/397 (36%), Gaps = 41/397 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              ++    +  VS D+R I  G +++ I G++ DGH F+ +AI  GA A +       +
Sbjct: 18  LAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLW------K 71

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137
                   N P++ V++T + L   A     +    ++ VTG++GK+S    V  +    
Sbjct: 72  KNVQNPPVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATK 131

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
               +  G  +  IG   TI S  ++                      +  + +  SS G
Sbjct: 132 FKVQKTEGNFNNHIGLPLTILSLEENTE--------------------MAVLEMGMSSRG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +      +  A   TN+G  H+    ++ A   AK+ +   L  ++    +Y  D   
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL--QDGGVFVYNGDEPL 229

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                 + N     ++ G  +    +   V          ++ + ++  F  P+ G+  V
Sbjct: 230 LTNRVPSMNLAAETITFGDARANNYYPTSVTLQATGTYFKMN-QDENIVFYLPVLGKHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + + L  L +   R E V T +    I   Y  +  ++E  
Sbjct: 289 YNTLASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAA 348

Query: 373 LKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKI 405
              +  +      +V         D++      +GK+
Sbjct: 349 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKL 385


>gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
 gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
          Length = 461

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 146/397 (36%), Gaps = 41/397 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              ++    +  VS D+R I  G +++ I G++ DGH F+ +AI  GA A +       +
Sbjct: 21  LAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLW------K 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137
                   N P++ V++T + L   A     +    ++ VTG++GK+S    V  +    
Sbjct: 75  KNVQNPPVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATK 134

Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
               +  G  +  IG   TI S  ++                      +  + +  SS G
Sbjct: 135 FKVQKTEGNFNNHIGLPLTILSLEENTE--------------------MAVLEMGMSSRG 174

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +      +  A   TN+G  H+    ++ A   AK+ +   L  ++    +Y  D   
Sbjct: 175 EIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL--QDGGVFVYNGDEPL 232

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                 + N     ++ G  +    +   V          ++ + ++  F  P+ G+  V
Sbjct: 233 LTNRVPSMNLAAETITFGDARANNYYPTSVTLQATGTYFKMN-QDENIVFYLPVLGKHNV 291

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + + L  L +   R E V T +    I   Y  +  ++E  
Sbjct: 292 YNTLASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAA 351

Query: 373 LKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKI 405
              +  +      +V         D++      +GK+
Sbjct: 352 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKL 388


>gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
 gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
          Length = 457

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 1   MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 54  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 108 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 164 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 214 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 270 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 328

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 329 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 388

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 389 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 439

Query: 465 AG 466
            G
Sbjct: 440 KG 441


>gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
 gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
          Length = 489

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 154/462 (33%), Gaps = 46/462 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +FVAI G + DGH ++     QGA A +V              +  P +VV
Sbjct: 37  DSRQVENGSVFVAIQGERVDGHDYVASVADQGAVAAIVDHEVP--------GAAVPQIVV 88

Query: 96  DNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           DNT   L   A     +      P  I+ +TG+ GK++     + +    G +   +G  
Sbjct: 89  DNTVTALGDLAKANIARRRASGEPFTIIGITGSVGKTTTKDLTKALLSTLGPTVAPVG-- 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                                 AL+           + A+  G   H             
Sbjct: 147 -----------SFNNEIGLPLTALTVGEHTRYFVAEMGANHVGEIAHLTTIAPPDIAVVL 195

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--- 267
            +G  H+    + +    AK  +   LLP    A++  DD + + +   A     R    
Sbjct: 196 KVGVAHLGEFGSVERIAQAKTEIVRGLLP-NGIAMLNTDDEHVEAMSAVAPGEVLRFGID 254

Query: 268 -LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             + G            +        ++ +G+       +PG   V NAL AA +   +G
Sbjct: 255 ESNAGRDALHACDIVTDSFDRASFTMVAGDGEQSQVALAIPGAHNVMNALAAAMVAHRLG 314

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVD-YAHTSNSLEMILKNIRTITSG 382
           +    +   L +   +      V T  RGG    +  D +    +S+   L  +   + G
Sbjct: 315 MPLEDIARVLGEQRHISPHRMAVSTVERGGARFTLIDDSFNANPDSMHAGLDGLARWSEG 374

Query: 383 RII------VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                     +   GGD  Q  R I    A    D  +    +P  +  + +  E+  G 
Sbjct: 375 AQYRVAVLGAMLELGGDEKQLHRSIGAYAAEHGIDEVVAVG-SPTDQALDALAGELAQGA 433

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
                  +   A+  A       D++V   + HE   ++  G
Sbjct: 434 KN----ADGAMAVEWAHSAAQADDMIVRIAREHEGTVVLLKG 471


>gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
 gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
          Length = 454

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 101/469 (21%), Positives = 183/469 (39%), Gaps = 52/469 (11%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +++  + PE  N L+IF     E+ +  +++DSR I  G IFVA+ G   DG+ F  
Sbjct: 9   QLSNIL--ELPE-TNLLAIF----SEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTE 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+ +GA AI+V               N P  +V +T       A     +    ++AVT
Sbjct: 62  IAVEKGAIAIIVDREV-----PVIASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +  +  + G          T +++  +  +           L    S  
Sbjct: 117 GSVGKTTTKELIAAVLSQRGKVH------KTRANYNNEIGVP-------KTLLELDKSHD 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +   + G      +  +   G  TN+G  HI    + +A   AK  L E++ P +
Sbjct: 164 YAVIEMAMRAKGEIALLTEIARPTLGIITNVGTAHIGRLGSTEAIAAAKCELLEQMSP-D 222

Query: 242 SPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           + AI+  D+     +++ AH       L+ G +G  +  + + A       T+ VEG +F
Sbjct: 223 TIAILNHDNPL---LIETAHKVWQGETLTYGLEGGDLVGQLIDAQ------TLRVEGINF 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG     N L A  +   + +D   + E L  +++  GR       +    +  
Sbjct: 274 P--LPIPGRHNALNYLAALAVAKVLNLDWTPLTEGL-TVNLPSGRSRRHQLPNDVLLLDE 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVT 416
            Y     S+   L+ ++     R I V       G    Q  R +   +     D  +V 
Sbjct: 331 TYNAGLESMIAALELLKQTPGQRHIAVLGTMKELGDHSPQFHRQVGETVKRLNIDHLLVL 390

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEA-IRTAIEMLNKQDVLV 463
            D+P+         EI  G  G   +     +A ++   EM+   D ++
Sbjct: 391 TDDPQ-------AQEIAVGADGVTTQCWQTHQALVQQLQEMIKPGDRIL 432


>gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
 gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
          Length = 452

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVL 388


>gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
          Length = 456

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/464 (18%), Positives = 168/464 (36%), Gaps = 46/464 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            +VS+D+R I+ G +F+A+ G + DG+ ++  A  +GA   +                  
Sbjct: 27  TDVSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGASIALAERPC----------PGW 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+++VD+    L   A+    +    ++ VTG+ GK+S    +  +  ++  +    G  
Sbjct: 77  PVVLVDDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEMIFSVLSQAFRTLKNEGNL 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + +            S   L +              +  S+ G             G  T
Sbjct: 137 NNLIGMPM-------SVFGLER------QHEAAVFEMGMSAFGEISALSQVAAPDIGVIT 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   +Q+    AK+ + + + P     I+  DD     ++         V++ 
Sbjct: 184 NIGVSHIEMLGSQENILKAKLEILDGMRP-GGKLILNGDDP----LLAGVQTDKAEVITY 238

Query: 271 GYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G +  G     ++V +        +   G        + G+  VYNAL A  +   +G++
Sbjct: 239 GIENTGCAYTAEEVESGAEGTAFCLRYPGGSIAARLQVAGKHNVYNALAAFAVGRVLGME 298

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITS-GRII 385
              +     +      R         GG  +    Y  + +S+      +RT+   GR +
Sbjct: 299 PDTIAAGFLQYAPTGYR---QKIERVGGVTFVEDCYNASPDSMRSAFDVLRTVQKTGRRL 355

Query: 386 VVFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            V     +         R +  + A +  D+     +N R       +A    G   F +
Sbjct: 356 AVLADMLELGDTAPDAHRAVGREAAENGVDVLFSYGENARYYQEGYTQAGGTQGA-HFTD 414

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVTN-GEKKMS 483
           K    +A+    +ML + D ++  G +G     I+   GE+  S
Sbjct: 415 KAALTDAL---CQMLREGDAVLFKGSRGMRLEEIIQTAGERWTS 455


>gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 457

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 1   MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 54  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 108 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 164 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 214 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 270 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 328

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 329 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEE 388

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 389 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 439

Query: 465 AG 466
            G
Sbjct: 440 KG 441


>gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 457

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 1   MKLT------FWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 54  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 108 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 164 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 214 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 270 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 328

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 329 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 388

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 389 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 439

Query: 465 AG 466
            G
Sbjct: 440 KG 441


>gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
 gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
          Length = 447

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 148/393 (37%), Gaps = 30/393 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 5   SIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVP 64

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                     + P+++V++T   L   A++   +    ++A+TG++GK++    +  I +
Sbjct: 65  ------NPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVE 118

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +    +  G  +                              V  + +  +     +  
Sbjct: 119 TTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIEVL 165

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K      TN+G  HI+Y  +++    AK+ +   L P            + + ++ 
Sbjct: 166 SKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLL 220

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N + 
Sbjct: 221 GNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMA 279

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK  
Sbjct: 280 AMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTF 338

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +     +V     +       +  + A 
Sbjct: 339 MHMDSSGKPKYLVLADMLELGDLSTKLHQESAE 371


>gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica W22703]
          Length = 454

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 139/384 (36%), Gaps = 26/384 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I EV+ D+R +  G +FVA+ G + DGH F             V++       S  + 
Sbjct: 23  VDITEVTIDTRKVTPGCLFVALKGERFDGHDFAED---------AVAAGAGALLVSKHLL 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  
Sbjct: 74  VEAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTS 133

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G                         L          + + A+  G   +  D  +  + 
Sbjct: 134 G-------------NFNNDIGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESA 180

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NL   H++   +      AK  +F  L P    AII AD        +  HN     
Sbjct: 181 LVNNLAAAHLEGFGSLAGVAQAKGEIFAGL-PANGTAIINADSNDWPHWQETLHNKRVWR 239

Query: 268 LSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S  G +        V         T+           PLPG   + NAL AA L +++G
Sbjct: 240 FSPHGAEDIDFFASDVRITPKTTYFTLHSPLGTVAIELPLPGRHNIANALAAAALAMSVG 299

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              A V E L +L  VPGR   +   +    +   Y     S+    + +  +   R++V
Sbjct: 300 ASLAAVREGLTQLQAVPGRLFPIELAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMV 359

Query: 387 VFGCGGDRDQ--GKRPIMGKIALD 408
           V   G   +        +G+ A  
Sbjct: 360 VGDMGELGETAVDCHRQVGEAAKQ 383


>gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 452

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 166/456 (36%), Gaps = 42/456 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +  ++  I  V++D+R + AG +FVA+ G + D H F  QA   GA A++VS    +   
Sbjct: 17  LHGQDLTIEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQAKDNGAGALLVSRKLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P +VV +TR      A+ +  +    ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQIVVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +                      L          + + A+  G     +   
Sbjct: 128 TLYTAGNLNN-------------DIGVPMTLLRLTHEHEYAVIELGANHQGEIAWTVSLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A    NL   H++   +      AK  ++  L P +  AI+ AD+           +
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PDDGIAIMNADNNDWLNWQSIIGS 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 S            +    +  + T++    D + L PLPG   + NAL AA L 
Sbjct: 234 RKTWRFSPNAANSDFSATNIHVTSHGTEFTLTTPTGDIEVLLPLPGRHNIANALAAAALS 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G   A +   L  L  VPGR   +        +   Y     S+   ++ +  +   
Sbjct: 294 MAVGASHAAIKAGLANLKAVPGRLFPIQLAENKLLLDDSYNANVGSMTAAVQVLSEMPGY 353

Query: 383 RIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI--------VTDDNPRSE---DPEKI 428
           R++VV      G + +     +         D  +        ++D +   E   D   +
Sbjct: 354 RVMVVGDMAELGDESEACHVQVGEAAKAAGLDRVLSAGTLSKAISDASEVGEHFADKSAL 413

Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
              +   I        + KG+R  A+   +  L + 
Sbjct: 414 IERLKALITEKQIVTVLVKGSRSAAMEEVVHALQEN 449


>gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 466

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 99/496 (19%), Positives = 179/496 (36%), Gaps = 64/496 (12%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I ++  E+         +  +    +  V +DSR I  G +FV + G + DGH F    
Sbjct: 1   MIKRNLAEIAAMCGGQIREAGDAGIVVQGVVTDSRQITKGCLFVPLAGERFDGHDFASDC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A + +        S       P ++VD+T   L   A     +    ++ +TG+
Sbjct: 61  LQAGAGACLWA-------LSKGTPPG-PAVLVDDTLIALQALAKSYLTETGAKVVGITGS 112

Query: 124 SGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +GK++    V  +        +  G  +  IG   TI                    L+ 
Sbjct: 113 NGKTTTKDLVYALLSTTYKVHKTKGNFNNHIGLPLTI--------------------LAM 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +  + +  S  G  +      +      TN+G  H+    +++    AK+ +   
Sbjct: 153 PEDTEIAVLEMGMSGRGEIELLSKIGEPETAVVTNIGESHLLQLGSREEIARAKLEILAG 212

Query: 237 LLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           + P     I   D+    +V+         G +  + G + +           + Q +  
Sbjct: 213 MKP-GGLFIYNGDEPLIPKVLAEPSTVKPEGLQTATFGLRPENDQYPTGILFTDHQTL-F 270

Query: 294 SVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  G + D    PL GE  V NAL A  +    G+  A + E   K+ +   R E V T 
Sbjct: 271 TPHGSEGDPLELPLLGEHNVSNALAAITVARHYGVGEAAIREGFSKVELTGMRIE-VITG 329

Query: 353 SRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL 407
             G  I  D Y  +  S++  L  +  +    + I V G     GD +      +G++  
Sbjct: 330 RSGITILNDAYNASPTSMKAALGVLEHMKGYRKKIAVLGDMLELGDSEADYHREIGEMLT 389

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEK-GNRIEAIRTAIEMLNKQDV 461
                 + T           +   I  G      P FI    ++ E IR  + +L+ QDV
Sbjct: 390 PGTVDQLFT--------CGPLSRHIAEGAKKQLDPNFIHAYTDKSELIRKLVSLLHPQDV 441

Query: 462 LVV-AGKGHETVHIVT 476
           ++V A +G +   +V 
Sbjct: 442 VLVKASRGMKLEEVVE 457


>gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
          Length = 459

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 99/476 (20%), Positives = 184/476 (38%), Gaps = 36/476 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+         +    +  ++ +D+R I  G +F+A  G + +G  F+  A+ +GA  
Sbjct: 6   LDEVREATGAQLYKMEHEEFTDIVTDTRKITPGVLFLAFKGERFNGEDFVRDAVEKGASG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS++      +      T +L+ ++T       A     +    ++A+TG++GK++  
Sbjct: 66  VMVSTSCPKAQLAGL---KTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKTTTK 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                +    G          T +++         + I L   L  L  +  T   VE  
Sbjct: 123 DLTAAVLSARGP------VLKTQANY--------NNEIGLPLTLLGLRKEH-TAAVVEIG 167

Query: 191 SHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             GL Q            G  TN+G  H++   + +    AK  + E  +P     ++ A
Sbjct: 168 MRGLHQIEAMAPIAAPTVGIVTNVGETHMELLGSIENIAKAKSEMVEA-IPAGGTVVLNA 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLF 304
           D+ Y   +  +A   G RVL+ G + +     K   I     ++ +  I  +G++  F F
Sbjct: 227 DNPYVAAMRSQARE-GVRVLTFGIEKEADVRAKEETIETIDGHETRFKIEWKGREQTFTF 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   VYNAL A     A+G+  A     L  L     RFE     +    I   Y  
Sbjct: 286 AMVGRHNVYNALAAIAAGFALGLTPAEAASGLRNLKATKMRFEVQDVKTYH-VINDAYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI---AIVTDDNPR 421
           +  S++  ++ +  +T GR I V G   +          ++  +LA+    A+VT    R
Sbjct: 345 SPMSMKAAIETLSELTKGRKIAVMGDMLELGSVSEEAHREVGHELAEHGFAAVVT----R 400

Query: 422 SEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
            +    I       G+P      +   A     ++L   D ++  G +G +   I+
Sbjct: 401 GQMGAFIADGAEEGGVPQVFRADSHEAAADYLHKILEPGDTILFKGSRGMQMEKII 456


>gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mollicutes bacterium D7]
 gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. D7]
          Length = 450

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 181/471 (38%), Gaps = 44/471 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +++     +LI+            +I   S DSR  + G +++ I+G + DGH FI
Sbjct: 1   MKVSEIVIATGGKLISGDETM-------EITGFSQDSRQAEVGMMYIPIIGERYDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA AI+                   +++VDNT K L   A  L       ++ +
Sbjct: 54  ESAFTNGASAIITDRLIE--------DDKHVVILVDNTLKALQKMAHYLRKHRKVKVVGI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    V  + ++      Q     T  ++  +        I L   +  L  +
Sbjct: 106 TGSVGKTSTRDMVYSVVKQ------QYKTLKTEGNYNNN--------IGLPLTILRLKDE 151

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  +     +           + TN+G  HI    +++    AK+ +    +  
Sbjct: 152 EVMILEMGMNHLNEMEELSRIACPDISAITNVGTAHIGELGSRENILKAKLEIVAG-MSD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
            S  +I  D+    +++        +V+ VG         +KV  + +  + TI+  GK 
Sbjct: 211 GSTLVINGDN----DMLSTVRFDNFKVVKVGVDCAAVFKAEKVILMDDHSEFTINYNGKV 266

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +  + P+PG   V NALVA  + I + I     ++ + +  +   R + +   +    I 
Sbjct: 267 YQVVVPVPGNHFVLNALVAIAIGINLEIPMEKCIQGISQFELTKKRMDVIELKNNITLID 326

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAI-V 415
             Y  + +S++  +  + T +  +I V   +   G   +Q  R +   +A    D+ + V
Sbjct: 327 GTYNASEDSMKSSIDVLATYSRRKIAVLADMLELGEFSEQLHRSVGKYVAEKQIDVLVAV 386

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +     D        + G+       N  E +      L   DV+++ G
Sbjct: 387 GREAKFMSDSAA-----LSGMAEIYYCNNNQEVVNYLKNNLQNDDVVLLKG 432


>gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
 gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
          Length = 453

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 164/453 (36%), Gaps = 44/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  + I  V+ DSR I+   +F+   G   DGH F+ QA+  GA A       SL    
Sbjct: 20  QYFHQSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLPKDI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  PI+ VD+T + L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  EG-----PIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIECVLNTEFNV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L    +  ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGMPLTI--------------------LDLDKNTDISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 LLSTIAEPDIAVITNIGESHMQDLGSREGIAQAKSEITIGL-KSNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +++   A C  +S+G +     +  V      + +  ++  +  ++  P+ G   + NA 
Sbjct: 234 VEQIKEAKC--ISIGLEQGNSLVCSVNDQVETEGIAFTINHQQ-EYELPILGIHNMKNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    +  +++++ +   R E   T  +   I   Y  +  S++  +  +
Sbjct: 291 IAIAVGQELGLSYKTIQHNIKRVKLTGMRMERHETEQQVTVINDAYNASPTSMKAAIDTL 350

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +   +IIV   V   G +  +    +   +     D  I         +   I     
Sbjct: 351 SNMNGRKIIVLGDVLELGDNSQRMHEEVGTYLQNKHIDQLIT-----FGSEATFIHNTGK 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I     ++   D +++ G
Sbjct: 406 SYVDEAHHFNDKEKLISYMTHIVQPDDNVLIKG 438


>gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 464

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 141/412 (34%), Gaps = 29/412 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          V
Sbjct: 112 KTTVKEMAAKILQKMTACEDEV--LYTFGNLNNDLGVP-------MTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A   Y  +  K       +  S              + V       + T+     + +
Sbjct: 223 NQA--FYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   
Sbjct: 281 INLPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDT 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           Y    +S++  +  ++   + RI  V       D             +AD  
Sbjct: 341 YNANVDSMKSAVSVLKNYPAFRIFAVGDMAELGD-----ESEACHQQVADFV 387


>gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes Clip81459]
 gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 457

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 148/393 (37%), Gaps = 30/393 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A        
Sbjct: 15  SIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVP 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                     + P+++V++T   L   A++   +    ++A+TG++GK++    +  I +
Sbjct: 75  ------NPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVE 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +    +  G  +                              V  + +  +     +  
Sbjct: 129 TTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIEVL 175

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K      TN+G  HI+Y  +++    AK+ +   L P            + + ++ 
Sbjct: 176 SKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLL 230

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N + 
Sbjct: 231 GNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMA 289

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK  
Sbjct: 290 AMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTF 348

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +     +V     +       +  + A 
Sbjct: 349 MHMDSSGKPKYLVLADMLELGDLSTKLHQESAE 381


>gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
 gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
          Length = 473

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 160/420 (38%), Gaps = 33/420 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI  +  F +       + +S DSR +  G IF  I G+  DGH F  QA A+GA 
Sbjct: 6   DKQALIAAIDGFVIGCMPETFSGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQAYARGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V    +    +   + + P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLIV----AENRLTDMEKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q+    G     +               +  +   +   L+ +  +    +    
Sbjct: 122 KEALKQVLATVGKVHANL--------------ASLNNCWGVPLTLARMPVESDYGIFEIG 167

Query: 190 SSHG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H    +  +  +       T++   H+ + +  +   +AK  +FE L  +E  A++ A
Sbjct: 168 MNHADEIRPLVKLVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEGL-DEEGVALLNA 226

Query: 249 DDAYSKEVMKRAHNAGC-RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           D+ +   ++++A   G  ++LS G  +      + +    +   + + + G++       
Sbjct: 227 DNGFFSYLVRKAKQCGVKKILSFGEAENSDYQARNIRLRTDFSSMIVHIGGQEKVIKIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRGGRIYVD-Y 362
           PG   V N+L     C  IGID A V   L +         R++    N     +  + Y
Sbjct: 287 PGRHIVQNSLAVIAACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPNGGEFHLIDESY 346

Query: 363 AHTSNSLEMI---LKNIRTITSGRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
                S+      L        GR I     +   G   ++  R ++  I    A+   +
Sbjct: 347 NANPASMRAALDLLATGPVGVGGRRIALLGDMLELGAYSEKLHRDLVKPICRSSANPVFL 406


>gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T]
 gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2002017]
 gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2747-71]
 gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-671]
 gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2930-71]
 gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-304]
          Length = 452

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPALVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 459

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 141/403 (34%), Gaps = 21/403 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++   L    M      +  VS+DSR      +F A+ G   D H ++ +A  
Sbjct: 1   MITLSLSQIAAILGAELMGDGTVIVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A VV               N   L+V ++R  L   A  L  K    ++A+TG+SG
Sbjct: 61  QGCVAAVVEHPTE---------GNIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I Q+S + S  +    T  +F  D  +           L          +
Sbjct: 112 KTTVKEMVASILQQSAVDSDDV--LFTQGNFNNDIGVP-------LTLLRLTEQHKFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +       N+   H++   +      AK  +F  L  +   AI
Sbjct: 163 ELGANHIGEIAYTTSLAQPDVALVNNVMAAHLEGFGSLDGVATAKGEIFRGLT-ENGVAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I     Y ++          +  +        + +++          +           P
Sbjct: 222 INLAHNYQQKWQADIGRHAVQYFAYDNPRADFYAEQIHFSEQGAYFLLHTPQGRVQINSP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  + NAL A  L + +G  +A V + LE   +V GR   +        +   Y   
Sbjct: 282 YLGEHNISNALAATALAMNVGATTAQVKKGLETPSLVKGRLFPIQPCENLLLLDDTYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIA 406
             S++  +  ++   + R+ VV   G   D        +G+ A
Sbjct: 342 VGSMKSAISVLQKYPAFRVFVVGDMGELGDNAQLCHQEVGEFA 384


>gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 503

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 157/407 (38%), Gaps = 30/407 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+A+GA  ++V               + P +VVDNT   L+  A+ +       +LA+
Sbjct: 55  AEAVARGASGVLVER--------LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G         +T+ +   +       P+ +   L+     
Sbjct: 107 TGSNGKTSVKALLLSILTEAGRVDG-----TTVYATPGNRNNEIGLPLAV---LAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V    + A   G   +  +  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              A+I ADDA+     ++  +      RVL  G Q    I  +++       Q T+   
Sbjct: 218 GGVAVINADDAFGMWFEQQLQSQPVQGRRVLRFGVQASAEITARQLRLHPGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L +   V GR +   T   G 
Sbjct: 278 QGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARAVAGR-QIAQTLPNGA 336

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            +  D Y     S      +      G   +V G   +       + 
Sbjct: 337 VLIDDSYNANPGS-LDAAIDALAAAQGEGWLVLGDMRELGAEGVALH 382


>gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
 gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
          Length = 460

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/402 (22%), Positives = 152/402 (37%), Gaps = 32/402 (7%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +   Q    +IN V +DSR I  G +F+A+ G K D H F    + QGA A++VS    +
Sbjct: 20  VTEQQAAALQINTVKTDSRKIVCGGLFIALKGEKFDAHDFAADVVKQGAGALLVSRRLDI 79

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                    + P +VV +TR  +   A  +  +    ++A+TG+SGK+SV      I ++
Sbjct: 80  ---------DCPQVVVKDTRLAMGKLAGWVRQQSKARVVALTGSSGKTSVKEMTAAILRQ 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHR 198
            G + +      T  +F  D        I +   L  L+ +    V    ++H G   + 
Sbjct: 131 CGNTLY------TAGNFNND--------IGVPLTLFRLTEEHQFAVIELGANHIGEIAYT 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +  +    NL   H++   +      AK  +F  L P E  AII  D        +
Sbjct: 177 TAMTRPESALVNNLFSAHLEGFGSLAGVAKAKGEIFAGLAP-EGTAIINLDSNDWGNW-Q 234

Query: 259 RAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                  RV         G   +   +          +       + + PLPG   V NA
Sbjct: 235 HGIREQQRVWHFSVTPAAGADFYATDIVEQPLATHFCLHTPIGKIELILPLPGRHNVANA 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A+ L I++G     +   L  L  VPGR   +  ++    +   Y   + S+      
Sbjct: 295 LAASALAISVGASLEDICAGLSALKAVPGRLFPIHLSAGKTVLDDTYNANTGSMIAAANV 354

Query: 376 IRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           +  ++  R++VV      G    +  R +   +A    D   
Sbjct: 355 LSQMSGYRVMVVGDMGELGKQAAECHREVGKAVATTNIDKVF 396


>gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
 gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
          Length = 464

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 154/416 (37%), Gaps = 27/416 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I +   +L   L    +   E  +  +S+D+R      +F A+ G K D H ++ +AI 
Sbjct: 1   MIKQTTQQLAQTLKGKLLGSGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV    ++         N P ++V++TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      Q+    T  +   D  +           L  +       V
Sbjct: 112 KTTVKEMTAKILQKVTACEDQV--LYTFGNLNNDLGVP-------LTLLRLIPEHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   +      AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKVGGKAIV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFD 301
             A   Y  E  K   +   +      + K  +       V    N  + T+     + +
Sbjct: 223 NLAH--YYPEWQKEIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  GE  V NAL A  L +A+G D   V   LE+   V GR   +        I   
Sbjct: 281 INLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKDNVLFIDDS 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           Y    +S++  +  ++   + RI VV      G D     + +   +     D+ +
Sbjct: 341 YNANVDSMKSAVSVLKQYPAFRIFVVGDMAELGKDSPACHQEVADFVKQAKLDLVV 396


>gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 469

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 104/464 (22%), Positives = 186/464 (40%), Gaps = 38/464 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR    G +FVAIVG   DGH+F+  A  +G    +VS+   + D       
Sbjct: 26  EITNIVIDSRLAGPGAMFVAIVGESTDGHIFLESAHQEGCRFFLVSNESYITDRF----K 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           ++ ++ VDNT   L L A           + +TG+ GK++    V  +            
Sbjct: 82  DSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGKTTTRDMVYSVLAS--------- 132

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +TI +  ++       P+ L +            + +  S  G  ++  + ++   G 
Sbjct: 133 KFNTIKNE-KNYNNQFGVPLTLFRLE---PGHQCAVIEMGMSGFGEIEYLANIVRPKIGI 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG---C 265
            TN+G  HI++  +Q+  F AKM +      + S  II  DD+Y +  ++R  N+     
Sbjct: 189 ITNIGMSHIEHLGSQEGIFKAKMEITSGF-DQTSSLIINGDDSYLRTELERYRNSQKDSY 247

Query: 266 RVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           +V S G   Q       +     +K + T S E + ++F  P  GE  V NA+ A     
Sbjct: 248 KVYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNAMAAILAGH 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G+    + + L        R + + T  R   I   Y  + +S+   LK ++     R
Sbjct: 308 ITGMTMEEISKGLLDFVATENRQDIIKT-DRFTLINDVYNASPDSMIAALKVLKLYKDRR 366

Query: 384 IIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IP 437
            + +       G   ++G R + G  ++D ADI I      +    E     +  G  + 
Sbjct: 367 RVAILGDCLEMGQYAEEGHRRV-GYQSIDKADIIITAGHAAKFIGVEA----MERGFDLS 421

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH--ETVHIVTNG 478
                  + E I +  +++   DV+++ A +G   E +  V  G
Sbjct: 422 RVFHFETKEELIDSLPKIVEDGDVILLKASRGMKFEDIVEVLKG 465


>gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 503

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 158/407 (38%), Gaps = 30/407 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+A GA  ++V               + P +VV+NT   L+  A+ +       +LA+
Sbjct: 55  AEAVACGASGVLVDR--------LLPALSVPQVVVNNTELALARIAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   L+     
Sbjct: 107 TGSNGKTSVKALLLSILQEAGRVDG-----TTVYATPGNRNNEIGLPLAV---LAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V    + A   G   +  +  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++  +      RVL  G Q    I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L +   V GR +   T   G 
Sbjct: 278 QGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARPVAGR-QIAQTLPNGA 336

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            +  D Y     S      +      G   +V G   +       + 
Sbjct: 337 VLIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRELGAEGVALH 382


>gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 455

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 166/463 (35%), Gaps = 28/463 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +L   L+     + +  ++ +S D+R IQ G +FV   G   +GH F+ QA  +G
Sbjct: 2   KKTLKQLAAWLNEDMAAFGDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +                  P+L VD+    L   A     +H    + +TG++GK+
Sbjct: 62  AGASLWQKD------EPNPPEGYPLLFVDDPELALQEMARAYRNEHKAKFIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +      +G  +       TI +F                 L       V  + +
Sbjct: 116 STKDIL------AGTLAPFFKVQKTIGNFNNQLG-------LPITILQLDEDTDVAVLEM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +      +      TN+G  H+    ++     AK  + +  +  +      
Sbjct: 163 GMSGFGEIEFLSKLARPHMTVITNIGEAHMQDLGSRAGIAKAKFEIIQG-MQNDGLLFYD 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            D+   +E++  A     + +  G +    ++   + A  +    T +    + DF   +
Sbjct: 222 GDEPLLQELV--AKEQHLQSVPFGLESNNLLYADNIHANADGSHFT-THGMMEGDFFISV 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QV N LVA  +   +G+ +  +   LE + +   R + +   +    I   Y    
Sbjct: 279 LGRHQVKNTLVAMLISHKLGLSNEQIRTSLEHVVLTDMRMQQILGTNGALFINDAYNAAP 338

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSE 423
            S++  ++ + T T      +V G   +    +R     +A  + +  I  V    PR  
Sbjct: 339 TSVKAAIQFMATSTIRPEKWLVLGDMLELGPNERIFHEGLAEHINEDEIDYVCLFGPRML 398

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              KI  +        +   +   AI   +E  N+  ++++ G
Sbjct: 399 YLYKILEKRFE-AERLLYTEDDYTAIIEKLEQANESSIVLLKG 440


>gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
          Length = 460

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 167/461 (36%), Gaps = 39/461 (8%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L+  L        + ++  V++DSR ++ G IFVA  G + DGH F  +A+ QGA  +
Sbjct: 7   SKLLAGLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYV 66

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV+                  ++  ++   + +  +    ++   ++ VTG+ GK++   
Sbjct: 67  VVNHPVPGVPEEKA-------ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQ 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                    G          T  +          + + + + L  L S     V     S
Sbjct: 120 MTYAALSGFGE------TIKTEGN--------QNNELGMPRTLMRLESSTEYAVIEMGMS 165

Query: 192 HGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H  +  RL    +   G  T +G  HI    +Q+    AK+ +   L P+ +P ++  DD
Sbjct: 166 HAGEIDRLARAARPDVGIITCIGVSHIGNLGSQENICKAKLEICNGL-PEGAPLVLNYDD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGE 309
            + ++    AH       S+  +   +    +    +     +   E   F    P  G 
Sbjct: 225 PFLRKAALPAHVRPVW-FSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGR 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL A      +G D+  V+  L        R + V  +S G  +  D Y    +S
Sbjct: 284 HNVANALAAYCAATRLGCDAKRVIRGLSNFEQTGRRQKVV--DSEGVTVIEDCYNANPDS 341

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++  L   +     R   + G   +     +     +G++A +     ++T      E  
Sbjct: 342 MKAALAMFKDFPCKRRFALLGDMLELGELSREAHEELGRLAAESGLYCLIT----YGE-- 395

Query: 426 EKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  R  ++    G   +   +  EA    +  +   D ++V
Sbjct: 396 QAKRTAVVAAAKGVETLHADSYREAADALLSRVQPGDAILV 436


>gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 454

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 144/383 (37%), Gaps = 26/383 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            I EV+ D+R +  G +FVA+ G + DGH F             V++       S  +  
Sbjct: 24  DITEVTIDTRKVTPGCLFVALKGERFDGHDFAED---------AVAAGAGALLVSKHLLV 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +   
Sbjct: 75  AAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLY--- 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  +F  D  +           L          + + A+  G   +  D  +  +  
Sbjct: 132 ---TAGNFNNDIGVPL-------TLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESAL 181

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             NL   H++   +      AK  +F  L P    AII AD        +  HN      
Sbjct: 182 VNNLAAAHLEGFGSLAGVAQAKGEIFAGL-PANGTAIINADSNDWPHWQETLHNKRVWRF 240

Query: 269 S-VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + +G +        V         T+           PLPG   + NAL AA L +++G 
Sbjct: 241 APLGAEDIDFFASDVRITPQVTHFTLHSPFGTVGIELPLPGRHNIANALAAAALAMSVGA 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A V E L +L  VPGR   +   +    +   Y     S+    + +  +   R++VV
Sbjct: 301 SLAAVREGLTQLPAVPGRLFPIELAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVV 360

Query: 388 FGCGGDRDQ--GKRPIMGKIALD 408
              G   +        +G+ A  
Sbjct: 361 GDMGELGETAVDCHRQVGEAAQQ 383


>gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
          Length = 452

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/464 (20%), Positives = 164/464 (35%), Gaps = 42/464 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + ++    ++  +  ++ V++D+R +  G +FVA+ G + D H F   A   GA A++VS
Sbjct: 9   LAEILRGELKGGDLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADTAKDNGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A           ++ P LVV +TR      A+ +  + P  I+A+TG+SGK+SV     
Sbjct: 69  RALD---------TDLPQLVVKDTRLAFGELAAWVRAQVPARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  R G + +  G  +                      L   +      + + A+  G 
Sbjct: 120 AILSRCGKTLYTAGNLNN-------------DIGVPMTLLRLNNDYDYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  +F  L      AI+ AD+    
Sbjct: 167 IAWTVGLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGL-SANGIAIMNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + ++       D L PLPG   + N
Sbjct: 226 NWQNIIGDRKVWRFSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +A+G     V   L+ L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAAAALSMAVGATPEAVKAGLKDLQAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDD-----------NP 420
            +  +   R++VV      G + +     +         D  + T               
Sbjct: 346 VLSEMPGYRVLVVGDMAELGAESEACHVQVGEAAKTAGIDRVLSTGKLSQAISHASGVGE 405

Query: 421 RSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
              D   + A +   I        + KG+R  A+   +  L + 
Sbjct: 406 HFADKTALVAHLKALIAEHQIITILVKGSRSAAMEEVVRALQEN 449


>gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
 gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 147/399 (36%), Gaps = 41/399 (10%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +    ++    +  VS D+R I  G +++ I G++ DGH F+ +AI  GA A +      
Sbjct: 16  AGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLW----- 70

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137
            +        N P++ V++T + L   A     +    ++ VTG++GK+S    V  +  
Sbjct: 71  -KKNVQNPPVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA 129

Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                 +  G  +  IG   TI S  ++                      +  + +  SS
Sbjct: 130 TKFKVQKTEGNFNNHIGLPLTILSLEENTE--------------------MAVLEMGMSS 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +      +  A   TN+G  H+    ++ A   AK+ +   L  ++    +Y  D 
Sbjct: 170 RGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL--QDGGVFVYNGDE 227

Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                   + N     ++ G  +    +   V          ++ + ++  F  P+ G+ 
Sbjct: 228 PLLTNRVPSMNLAAETITFGDARANNYYPTSVTLQATGTYFKMN-QDENVVFYLPVLGKH 286

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            VYN L +  +    G+    + + L  L +   R E V T +    I   Y  +  ++E
Sbjct: 287 NVYNTLASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTENGLTIINDAYNASPTAME 346

Query: 371 MILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKI 405
                +  +      +V         D++      +GK+
Sbjct: 347 AAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKL 385


>gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 464

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 139/412 (33%), Gaps = 29/412 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          V
Sbjct: 112 KTTVKEMTAKILQKMTACEDEV--LYTFGNLNNDLGVP-------MTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A   Y  +  K       +  S              + V    +    T+     + +
Sbjct: 223 NQA--FYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLSGSHFTLHSPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   V NAL A  L +A+G     V   LE+   V GR   V  N     I   
Sbjct: 281 INLPYLGAHNVSNALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEVNQHCLLIDDT 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           Y    +S++  +  ++   + RI  V       D             +AD  
Sbjct: 341 YNANVDSMKSAVAVLKNYPAFRIFAVGDMAELGD-----ESAACHQQVADFV 387


>gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
 gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
          Length = 474

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHR 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKNTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 475

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 164/476 (34%), Gaps = 41/476 (8%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   P  +   + K+   V  DSR ++ G +F A+ G   DGH +   
Sbjct: 1   MIPLSLTEITGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGEHVDGHDYARG 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++ +   S  D         P LVV +    +   A  +  +    ++A+TG
Sbjct: 61  AVEAGAVAVLATRPVSTPDAP------VPALVVPDVVAAMGAIARAVVERLGTTVVALTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G  +              +  +L            
Sbjct: 115 SAGKTSTKDLIAQLLQRHGPTVWTHGSFNNEIGLPLTALRADTTTQHL------------ 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             + + A   G  ++  D      G   N+G  HI     ++    AK  L E L     
Sbjct: 163 -VLEMGARGKGHIRYLTDLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPSAED 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGK 298
              A++ ADD   + +  R      R +  G  G          + +  +   T+     
Sbjct: 222 GGVAVLNADDPLVRAMASRTK---ARTVLFGEAGDAHVRASNVRLADGGRPAFTLHTPTG 278

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +    G+    +   L +   +      V   S G  +
Sbjct: 279 CGDVTMRLYGEHHVSNALAAAAVAHETGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTV 338

Query: 359 YVD-YAHTSNSLEMILKNIRTI----TSGRIIVVFGCGG---DRDQGKRPIMGKIA--LD 408
             D Y     S+   L+ +  +       R   V G      D    +   +G++A  L+
Sbjct: 339 VNDAYNANPESMRAALRALAAMGAATPGRRTWAVLGPMAELGDESLAEHDAVGRLAVRLN 398

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +  V        D               +   +   A+      L   DV++V
Sbjct: 399 VSKLVAVGGREAAWLDMGAKNEG--SWGEESVHVSDVRAAVDLLRSELRPGDVVLV 452


>gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria innocua
           Clip11262]
 gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           innocua Clip11262]
          Length = 457

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 147/395 (37%), Gaps = 30/395 (7%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
             SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA   GA A      
Sbjct: 13  DSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKD 72

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                      ++ P+++V+NT   L   A++   +    ++A+TG++GK++    +  I
Sbjct: 73  VP------NPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAI 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +    +  G  +                              V  + +  +     +
Sbjct: 127 VETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAVLEMGMNHRHEIE 173

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K      TN+G  HI+Y  +++    AK+ +   L P            + + +
Sbjct: 174 VLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEENL 228

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +    +   R L+ G      I+  ++ A         + E  D +   P+ GE  V+N 
Sbjct: 229 LLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNT 287

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           + A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK
Sbjct: 288 MAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLK 346

Query: 375 NIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +        +V     +       +  + A 
Sbjct: 347 TFMHMDSKGKPKYLVLADMLELGDLSTKLHQESAE 381


>gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 442

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/381 (20%), Positives = 136/381 (35%), Gaps = 21/381 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  VS+DSR      +F A+ G   D H ++ +A  QG  A VV              
Sbjct: 6   VTVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTE--------- 56

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N   L+V ++R  L   A  L  K    ++A+TG+SGK++V   V  I Q+S + S  +
Sbjct: 57  GNIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDV 116

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  +F  D  +         +    +   G  H+   A +  L Q           
Sbjct: 117 --LFTQGNFNNDIGVPLTLLRLTERHKFAVIELGANHIGEIAYTTSLAQ-------PDVA 167

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H++   +      AK  +F  L  K   AII     Y ++          + 
Sbjct: 168 LVNNVMAAHLEGFGSIDGVATAKGEIFRGLT-KNGVAIINLAHNYQQKWQADIGRHAVQY 226

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +        + +++          +           P  GE  + NAL A  L + +G 
Sbjct: 227 FAYDNPRADFYAEQIHFSEQGASFLLHTPQGRVQINSPYLGEHNISNALAATALSMNVGA 286

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +A V + LE   +V GR   +        +   Y     S++  +  ++   + R+ VV
Sbjct: 287 TTAQVKKGLETPSLVKGRLFPIQPCENLLLLDDTYNANVGSMKSAISVLQKYPAFRVFVV 346

Query: 388 FGCGGDRDQG--KRPIMGKIA 406
              G   D        +G+ A
Sbjct: 347 GDMGELGDNAQLCHQEVGEFA 367


>gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
 gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
          Length = 477

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 171/480 (35%), Gaps = 47/480 (9%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +++  L+   +  ++    +E + DSR +  G +FVA+ G + DGH F+  A   GA 
Sbjct: 4   LTDVLEALTGKHIDMQKPLTFSEAAIDSRQVIPGSLFVALPGVRTDGHQFVGAAFQNGAI 63

Query: 70  AIVVSSAYSLQDFSATIRSNTP----------------ILVVDNTRKFLSLFASRLYGKH 113
             +V         +  +R+ +P                 L V+NT + L   A     + 
Sbjct: 64  LALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWRRRL 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG+ GKS+    + ++  +   +    G  +                      
Sbjct: 124 NIRVIGITGSVGKSTTKELIAEVLSQRYRTLKNPGNLNN-------------EIGLPLTL 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L          + +     G      D  +   G  TN+G  H +   +Q+A    K  L
Sbjct: 171 LRLGKGHERAVLEMGFYVPGEIALLCDIAQPQVGVITNIGTVHAERAGSQEAIARGKSEL 230

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             + LP    AI+  DD + + +  +          +  +      +         +  +
Sbjct: 231 V-QALPVGGYAILNHDDPWVRWMADKTQAQILY-YGLTPEAHLWADEIETMGLEGIRFRL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               + F    PL G   V  AL A  + I  G+    ++  L++      R   V ++S
Sbjct: 289 HYRRESFSVRVPLIGHHSVQTALRATAVGIVEGLTWGEIIHGLQR-SPTQLRLVAVRSSS 347

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDL 409
            G  I  D Y  +  S    L+ +  +  GR I V G   +    +Q     +G  A ++
Sbjct: 348 -GALILDDTYNASPESTLASLQILHEM-KGRRIAVLGDMLELGPYEQSGHEKVGVRAAEV 405

Query: 410 ADIAIVTDDNPRSEDPEKI-RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD+ +        E  + I RA    G+         +  +AI     +L + DV+++ G
Sbjct: 406 ADVLV-----AVGELSKIIARAAREAGMKPEKIFWVPDTSQAIEVLRPLLKEGDVVLIKG 460


>gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
 gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
          Length = 474

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 18  MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHH 70

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 71  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 125 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 181 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 231 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 287 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 345

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 346 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 405

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 406 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 456

Query: 465 AG 466
            G
Sbjct: 457 KG 458


>gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis
           ATCC 367]
 gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis ATCC 367]
          Length = 461

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/423 (21%), Positives = 158/423 (37%), Gaps = 39/423 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+Q        E+ + +       QW    +  V+ DSRH+Q G +F+ + G   DGH 
Sbjct: 1   MKMQ------LAEIAHAVGAINDFEQWGSVSVTSVAFDSRHLQPGGLFIPLTGEH-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  AI  GA A + +         A+  ++ P++ VD++ K L   A     K    ++
Sbjct: 54  FIQSAIDHGAVATLWARDL------ASAPADFPVIQVDDSLKALQTLAQYYLSKINPRVV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         Q   T T ++F  +  +           LS   
Sbjct: 108 AVTGSNGKTTTKDMIAAVLST------QFNVTKTHANFNNEIGVP-------MTVLSMEP 154

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  +  V +     G        +       T +G  HI++  T+    +AKM +    L
Sbjct: 155 NTEMLVVEMGMDRPGQLDFLSQLVSPDLALITMIGEAHIEFFGTRDKIADAKMEI-THGL 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   +   D+   +E   RA     R ++ G QG                   + +  
Sbjct: 214 SDDGVFVFNGDEPLLRE---RATELTQRQVTFGQQGTDDLFATDVTGTPTTTSFTTNQWP 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G + V NAL A  + +   I      + L  + +   R E+V T++ G  I
Sbjct: 271 EVTFTIPMIGTYNVNNALAALSVAMLYRIRPESAKQALATVSLTENRAEWV-TSASGAAI 329

Query: 359 YVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADI 412
             D Y     + + +L        +G+  VV G   +       +   +A        D 
Sbjct: 330 LSDVYNSNPTAAKEVLTAFSQTPVTGQRYVVLGDMLELGDQADAMHASLASAIDATKIDH 389

Query: 413 AIV 415
             +
Sbjct: 390 VYL 392


>gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
 gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
          Length = 452

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 165/464 (35%), Gaps = 42/464 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + ++    ++  +  ++ V++D+R +  G +FVA+ G + D H F  +A   GA A++VS
Sbjct: 9   LAEILRGELKGADLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADKAQESGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                        +N P L+V +TR      A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLD---------TNLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +                      L   +      + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLNNDYDYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  +F  L      AI+ AD+    
Sbjct: 167 IAWTVGLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGL-SANGIAIMNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + ++       D L PLPG   + N
Sbjct: 226 NWQSIIGDRKVWRFSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +A+G     +   L+ L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAAAALSMAVGATHEAIKAGLKDLQAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVT-------DDNP---- 420
            +  +   R++VV      G + +     +         D  + T        D      
Sbjct: 346 VLSEMPGYRVLVVGDMAELGAESEACHVQVGVAAKAAGIDRVLSTGKLSQAISDASGVGE 405

Query: 421 RSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
              D   + A +   I        + KG+R  A+   +  L + 
Sbjct: 406 HFADKSALAAHLKALIAEHQVMTILVKGSRSAAMEEVVRALQEN 449


>gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
 gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
          Length = 469

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/479 (17%), Positives = 172/479 (35%), Gaps = 24/479 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +  + + +    +   +             +++D+R I +G +FVA+ G K DG  F  +
Sbjct: 1   MTGMTWDEVQAAVGAAAHNGKLAGNTVFPHITTDTRKISSGDLFVALRGEKFDGADFAAE 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA A++V +  S     A  ++   +L  D+  +     A     K    ++A+TG
Sbjct: 61  ALERGAAAVIVGTPLSTSAEKALKKAKGTVLKADDGLRAYQAIAHAWRMKFDIPVIAITG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++       +    G                +               L  +     
Sbjct: 121 SNGKTTTKELTAAVLSGRGKV-------------CRTAENYNNEVGLPLTLLGIVPEDFA 167

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +     G             G  TN+   H++   + +    AK  L E  +P   
Sbjct: 168 AVVEIGMRGLGQIAALAPVAAPTIGIVTNVCEVHMELLGSIENIAKAKAELVEA-IPSGG 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFD 301
             I+ ADD+    +   A + G R+L+        +  + +    +  +  ++   +  +
Sbjct: 227 TVILNADDSRVAAMRSFAAD-GVRILTYAIDADADVRAEALQCAADGSRFMVTYANERHE 285

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   LPG   V N L A     A+G+    +   L  +     R+E     +    I   
Sbjct: 286 YAVSLPGRHNVSNTLAALAAGFALGLTPQEMQAGLRNIEGTKMRYETESVGAWMF-INDA 344

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S+   L+    +  GR I V G   +     +    ++G+ A +L   A+VT  
Sbjct: 345 YNASPSSMHAALETTAALYPGRKIAVLGDMLELGAAAEEAHRMIGRRAAELGFAAVVT-Y 403

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
            P++    +   E   G           EA +   ++L+  D ++  G +G     ++ 
Sbjct: 404 GPQARWIHEAAEE--TGCAACFHAETHEEAAQLLRKILSDGDTVLFKGSRGMRMEQVIA 460


>gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
 gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
          Length = 455

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/483 (18%), Positives = 174/483 (36%), Gaps = 61/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK      K   E++   +  P  + E  +  +  D+R I+AG +FV  VG   DGH F+
Sbjct: 1   MKKT---LKQIKEMLQIETRSP--FDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A                 ++ P++ VD+T   L   A+    +    ++AV
Sbjct: 56  DQARKAGASAAFWQKDVP------NPPADFPLIFVDDTLLALQQTAAVYLQEVNPKVIAV 109

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++    +  +        +  G  +  IG   TI +  +D              
Sbjct: 110 TGSNGKTTTKDILSGMLRETFRVHRTGGNFNNHIGLPYTILTMPEDTE------------ 157

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V  + +  +     +      +      TN+G  HI+Y  +++   NAK  +
Sbjct: 158 --------VAVLEMGMNHRHEIEVLSQIAQPDIAIITNIGEAHIEYLGSREEIANAKFEI 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              L   +   I   D+     ++        R ++ G   +            +     
Sbjct: 210 VTGL-KADGLFIYPGDEP----LLTEHTALPARSVTFGRTDQATIFATTIKTSEEGTTFT 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + +  D +F  P+ GE  V+N++ A      +G++   +   L  +     R E++ T  
Sbjct: 265 TNQTADREFYVPIIGEHNVFNSMAAMLAAFELGVEPETIQTALRHIDRSKSRLEWLTTP- 323

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIA----- 406
           +G RI  D Y  +  +L+ +L     +  + +  +V     +       +  + A     
Sbjct: 324 KGSRILNDAYNSSPTALKTVLNTFLNMPTAAKKYLVLADMLELGDFSEQLHQESARTLEN 383

Query: 407 LDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ-DVLV 463
            ++A + +      N   E    I  E +H            EA+  A+       + ++
Sbjct: 384 GEVAGVFLYGTAMKNFADEAASLIGQEKVHYFTD-------KEALTDAVSNALTGNEWIL 436

Query: 464 VAG 466
           V G
Sbjct: 437 VKG 439


>gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 477

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/411 (20%), Positives = 147/411 (35%), Gaps = 27/411 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            E+   L I P    +  +  VS DSR ++ G +FVAI G + DGH FI  A   GA   
Sbjct: 14  AEIARALGIAPPAA-DVVVTGVSIDSRTVERGDLFVAIKGERSDGHRFITAAFDNGAAGA 72

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +VS  Y+ Q     + ++ P+  VD+    L         +    I AVTG+ GK++   
Sbjct: 73  LVSRDYAPQ---VPLAADEPLFRVDDPFAALEELGRVARARTDARIAAVTGSVGKTTTKE 129

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++ +   SG +   +   +                + +  +L+ + +     V     +
Sbjct: 130 MLRVMLGESGPTHASVKSYNNF--------------MGVPLSLARMPAASRFGVFEIGMN 175

Query: 192 H-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H G        ++      T +   HI++  ++     AK  +FE L  +   AI+ AD+
Sbjct: 176 HAGEIVPLAKLVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEGL-EQGGAAILPADN 234

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            + + +   A     RV+  G   +    L           VT  +  +   F    PG 
Sbjct: 235 PHFESLAAFARERSARVVPFGLSSEAEARLVSFERTEEGSVVTADIFDQRVTFALAAPGR 294

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTS 366
               NA+ A      +G +       L +     GR         RG  + +D  Y    
Sbjct: 295 HLAQNAVAALAGVSLLGGNVEAAAAALARFEAPEGRGRSATFETPRGPVLVIDESYNANP 354

Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            S+   L  +  +      R I V G   +           +A  +   AI
Sbjct: 355 ASMHAALDVLGAVPPSRYARRIAVLGDMLELGHDAPQFHASLASAVDSNAI 405


>gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 464

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 140/412 (33%), Gaps = 29/412 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      ++    T  +   D  +           L          V
Sbjct: 112 KTTVKEMTAKILQKMTACEDEV--LYTFGNLNNDLGVP-------MTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A   Y  +  K       +  S              + V       + T+     + +
Sbjct: 223 NQA--FYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   + NAL A  L +A+G     V   LE+   V GR   V  N     I   
Sbjct: 281 INLPYLGAHNISNALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEVNQHCLLIDDT 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           Y    +S++  +  ++   + RI  V       D             +AD  
Sbjct: 341 YNANVDSMKSAVAVLKNYPAFRIFAVGDMAELGD-----ESAACHQQVADFV 387


>gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
 gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
          Length = 452

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/463 (21%), Positives = 174/463 (37%), Gaps = 42/463 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV++D+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V++TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +                      L          + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTKEHQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++  L P+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLQAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI----VTDDNPR------ 421
            +  +   R +VV      G +     R +         D  +    ++ D  R      
Sbjct: 346 VLSEMPGFRTMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGALSADISRASGVGE 405

Query: 422 -SEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNK 458
              D   + A +      H I   + KG+R  A+   +  L +
Sbjct: 406 HFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 449

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 151/372 (40%), Gaps = 9/372 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR +  G +FVA+VG   DGH FI QA  +GA   +V         +    
Sbjct: 6   IDFTGVSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDR----LTGDQE 61

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ V NTR  L   A+    +    ++AVTG++GK++V   +  I +R+   + + 
Sbjct: 62  YGIPLIRVQNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPEE 121

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T    +                  L          + +  +  G   +     K    
Sbjct: 122 MRTDAPDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVA 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN G  HI    + +A   AK  +FE L  ++  A+I ADD +++   + A N   ++
Sbjct: 182 LITNAGDAHIQGLGSVEAVARAKGEIFEGL-DQQGIAVINADDPHNRLWRELAGNR--QI 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +  G + K           +  Q+T+ +     +    +PGE  V NAL AA + +A+G+
Sbjct: 239 IDFGLKSKAKVSADYKLTFSGAQITLILPQGVEETTLQVPGEHNVRNALAAAAVAVAVGV 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
               +   L     V GR +      RG  +  D Y    +S+   L  +      +++V
Sbjct: 299 SLKTIASGLSTFGGVKGRMQR-KCGVRGATLIDDCYNANPDSVRAALAVLARAEGKKVLV 357

Query: 387 VFGCGGDRDQGK 398
           +   G   D+G+
Sbjct: 358 LGDMGELGDKGR 369


>gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 503

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 159/407 (39%), Gaps = 30/407 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDTMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+A+GA  ++V               + P +VVDNT   L+  A+ +       +LA+
Sbjct: 55  TEAVARGASGVLVDR--------LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   ++     
Sbjct: 107 TGSNGKTSVKALLLSILQEAGRVDG-----TTVYATPGNRNNEIGLPLAV---IAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  +  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++  +      RVL  G Q    I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++ + L +   V GR +   T   G 
Sbjct: 278 QGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIADGLAQARAVAGR-QIAQTLPNGA 336

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            +  D Y     S      +      G   +V G   +       + 
Sbjct: 337 VLIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRELGAEGVALH 382


>gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
 gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
          Length = 452

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V+    +         + P ++V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVNRPLDI---------DLPQVIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVL 388


>gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 457

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+   +       QW +  +  +  DSR I  G +FV + G   DGH 
Sbjct: 1   MKLT------FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHH 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+A G +A                    P+L V +    +   A+    K   N++
Sbjct: 54  FIESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +     ++    G  +                  L   +    
Sbjct: 108 AVTGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEM---- 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H    +    L Q           + T +G  H++   ++     AKM + + L 
Sbjct: 164 --GMDHAQEISFLSNLAQ-------PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGL- 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +   
Sbjct: 214 AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKISDT 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G  I
Sbjct: 270 QMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEI 328

Query: 359 YVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-- 414
             D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  AI  
Sbjct: 329 LSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEE 388

Query: 415 ----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + D    +  P  I +          EK   IEA++  +     +D++V+
Sbjct: 389 VFLYGSEMAYLADKLQETYAPANIHS------FKKEEKNELIEAVKKVL---QPEDMVVL 439

Query: 465 AG 466
            G
Sbjct: 440 KG 441


>gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
 gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
          Length = 458

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 171/465 (36%), Gaps = 35/465 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           SI   ++    I+ VS+D+R I+ G ++V + G   +GH F+ +A  +GA A + S    
Sbjct: 16  SIIDERYASVMIHGVSTDTRTIERGNLYVPLKGATFNGHQFVKEAFEKGAAAALWSK--- 72

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                    ++ P++ V+++   L   A     +    I+ VTG++GK++    +  +  
Sbjct: 73  ---HEPNAPTDVPLIFVEDSLVALQQLAHAYRKQLRACIIGVTGSNGKTTTKDMIASLL- 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                    G    +     +       P+ L   L          V +  S  G  +  
Sbjct: 129 ---------GTVYRVQKTEGNLNNHIGVPLTL---LRLKEETEYAVVEMGMSGFGEIELL 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +      TN+G  H+    +++    AK  + + L  ++   I + D+   +  ++
Sbjct: 177 STLAEPDVSIITNIGESHLQELGSREGIATAKFEIVKGL-KRDGLFIYHGDEPLLQTRVE 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A+ +  +   +     +  L  +    +     ++    +  F  PL G   V NAL A
Sbjct: 236 NANLSHVQTFGMAPTNDYYPL-DIRVQADGTTFKVN-RWPNETFRMPLLGRHHVMNALAA 293

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             +     +D   + E   +L V   R E +   S G  I  D Y  +  S+   L+ + 
Sbjct: 294 IAVARFAFVDIDHIKEGFLRLSVTKMRTEVIK-RSDGVTIINDAYNASPTSMRAALELLG 352

Query: 378 TITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +T  R  +          +++      +G++        ++T      E  + I     
Sbjct: 353 QLTGYRKKIAIVGDMLELGEQEIAFHEQIGEMIDPQKIDYVLT----YGERAKAIAERAS 408

Query: 434 HGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
                   +   ++ E       ++   DV+++ A +G +   I+
Sbjct: 409 KRFSEGRVRAYDDKSELAADVRGIIEAGDVILLKASRGMKLEEII 453


>gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 459

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 168/413 (40%), Gaps = 37/413 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+      +  E+   +       QW E +++ V+ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKM------NIAEIARAVDAQNDIEQWSEIEVSGVAFDSRKLKNGDLFVPLQGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F+  A   GA A + ++  S +D         P +VVD+    L         K    ++
Sbjct: 54  FVATAFQNGASATLWAADRSYED------DGYPRIVVDDPLAALQQLGKYYLHKINPLVV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV+G++GK++    +  I         Q+  T T ++F     +           L+  S
Sbjct: 108 AVSGSNGKTTTKDMIASILST------QMNVTKTYANFNNAIGVPV-------TLLNMES 154

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +     V +  S  G        +       T +G  HI++  ++    +AKM +    L
Sbjct: 155 NTEAVVVEMGMSHFGELDELSKLVTPDIAVLTMIGEAHIEFFGSRDRIADAKMEI-THGL 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
            ++   +   D+   +E   RA +      + G Q    I+   V    +  +  +++  
Sbjct: 214 REDGTFVYNGDEPLLRE---RAKDLKQGQKTFGRQLDNDIYATSVEQSDHDLRFKVNL-W 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +F  P+ GE+ V NA+ A  +   + +  + +   L  + +   R E++ T  +G +
Sbjct: 270 PDEEFTIPMIGEYNVNNAMAAMMVGHLLHVTPSHLKIGLANVELTENRAEWL-TGQQGEK 328

Query: 358 IYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALD 408
           I  D Y     +++ +L+ +  +   GR ++V G   +       +   +A +
Sbjct: 329 ILSDVYNSNPTAVKEVLETLNELPETGRRLIVLGDMLELGDASAKLHAGLATE 381


>gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
 gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
          Length = 457

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/445 (21%), Positives = 179/445 (40%), Gaps = 47/445 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I+ +++DSR+I  G IF+A+ GN  DGH F   A+ +GA A++V         S   
Sbjct: 27  DFLIDGITTDSRYINPGEIFLALRGNNFDGHDFANIAVDKGAIALIVDH-----HISVKS 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P + V +T       A     +    ++A+TG+ GK++    +  +    G+    
Sbjct: 82  TKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIV--- 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKL 204
                         +    + I + K L  L+ Q   +  +E    GL++  L     + 
Sbjct: 139 -----------HKTKENYNNEIGVPKTLLELTRQH-DYAVIEMGMRGLNEIALLSQIARP 186

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI    +++A   AK  L  E +P ++ AI   D++   +  K+     
Sbjct: 187 TIGLITNVGTAHIGRLGSKEAIAQAKCELLAE-MPPDATAIFNHDNSLLVQTAKKVWKG- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              +S G +G  I  + +         T+ VEG DF    PLPG     N L A  +   
Sbjct: 245 -ETISYGLEGGDITGELLDNQ------TLRVEGMDFP--LPLPGRHNALNYLGAIAVAKC 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           + +D  ++++ +  +++  GR      +     +   Y     S++  L+ ++ I   R 
Sbjct: 296 LKLDCNVLMQGIS-VNLPKGRSRRYQLSGDILLLDETYNAGLESMKAALELLKEIPGQRH 354

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD----LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + G   +  +    +  ++         D  +V  D     DPE I   I  G  G +
Sbjct: 355 LAILGTMKELGEKSAELHREVGETAKALGIDHLLVLVD-----DPEAIA--IADGALGMV 407

Query: 441 EK--GNRIEAIRTAIEMLNKQDVLV 463
            +    + E I+   E++   D L+
Sbjct: 408 TECLPTQEELIKRLTEIVQPGDRLL 432


>gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
          Length = 456

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 174/478 (36%), Gaps = 44/478 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  ++I+ +    +Q    ++ I  +++DSR      +FV + G++ DGH 
Sbjct: 1   MKL------DIQDIISAVGGKCIQEGLIKQPIEVITTDSRSQVTNGLFVPLKGDRFDGHE 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI     +G  A +      +     T       + V++TR+ L         +    ++
Sbjct: 55  FIKSVYEKGVIATLTMEDKVIDPRLWT-------IKVEDTRQALLDLGHYYRNQFTVPVV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG+ GK+S    V  +         +     T  +F         + I L   L  + 
Sbjct: 108 GITGSVGKTSTKEMVAAVLS------GKWHVHKTDGNF--------NNEIGLPLTLFKMD 153

Query: 179 SQGVTHVSVEASSHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +     V     +H  + HRL           TN+G  HI+   +++    AK+ + + L
Sbjct: 154 ASHEAAVIEMGMNHFDEIHRLSLAAAPEVAVITNVGTSHIENLGSREGILKAKLEILDGL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +P     ++  D+    +++          ++ G       + + +          ++  
Sbjct: 214 MP-GGLLVLNGDN----DLLSTVGELPFNKVTYGLNTSNDYYAEAIANEGEYTTAIVTTP 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +      GE  VYN L A  +   +G+  A + + LE       R      +++  
Sbjct: 269 QYKCNIRIKALGEHMVYNTLAAIAVAQYLGLSKAEIQKGLESYAPAKMRMHLETYDNQIT 328

Query: 357 RIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I   Y  + +S+E  LK +R   T GR I V G   +  +    +  K+    A+I I 
Sbjct: 329 VIDDTYNASPDSMEAALKVLRDYDTKGRKIAVLGDMFEMGEFAPELHKKVGAFAAEIGID 388

Query: 416 TDDNPRSEDPEKIR--AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV-AGKGH 469
                     E I   A+   G P F       EA I      L  +D ++  A +G 
Sbjct: 389 -RVYAVGTLAEYIFKGAKEQEGAPTFYYPT--KEAFIEVMQRELQAEDTVLFKASRGM 443


>gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
 gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
          Length = 464

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/416 (20%), Positives = 155/416 (37%), Gaps = 27/416 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I +   +L   L+   +   E  +  +S+D+R      +F A+ G K D H ++ +AI 
Sbjct: 1   MIKQTTQQLAQTLNAKLLGSGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV    ++         N P ++V++TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      Q+    T  +   D  +           L          V
Sbjct: 112 KTTVKEMTAKILQKVTACEDQV--LYTFGNLNNDLGVP-------LTLLRLTPEHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   +      AK  ++  L      AI
Sbjct: 163 ELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGL-KAGGKAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFD 301
           +     Y  E  K   +   +      + K  +       V    N  + T+     + +
Sbjct: 222 VNLAH-YYPEWQKEIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  GE  V NAL A  L +A+G D   V   LE+   V GR   +        I   
Sbjct: 281 INLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKENVLFIDDS 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           Y    +S++  +  ++   + RI VV      G D     + +   +     D+ +
Sbjct: 341 YNANVDSMKSAVSVLKQYPAFRIFVVGDMAELGKDSPACHQEVADFVKQAKLDLVV 396


>gi|111018278|ref|YP_701250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817808|gb|ABG93092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 502

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 105/330 (31%), Positives = 152/330 (46%), Gaps = 10/330 (3%)

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L + L+  +   +  V++E SSHGL  HR+DG     G FTNL RDH+D+H    AYF 
Sbjct: 172 ELQQTLAAFAEHRIGAVAMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFA 231

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK RLFE    + + A +  DD + + +            S        H   V A    
Sbjct: 232 AKARLFEP--GRCAAAAVGVDDEFGRRLAATVTVPRV-TFSSRTTAADFHASAVHADEGG 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+   G        L G  QV NAL A       G+D    +  +E    VPGR E 
Sbjct: 289 TSFTLHGAGARKPVRLRLLGVHQVDNALAAIAAIAVRGVDLDSAVAGIESPDTVPGRLEA 348

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +    +VDY H       +   +R++T GR+I V G  G+RD GKR  +G  A  
Sbjct: 349 VDA-GQPFLAFVDYMHNPAGQRRLFPYLRSLTRGRVIAVVGATGERDPGKRVPLGATAAR 407

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            AD  IVTD++P S+D +++R ++  G         +   +R EAI  A+ +    DV+V
Sbjct: 408 FADTVIVTDESPCSDDAQRLREDVARGARSGGDAEVLVVPDRAEAIVAAVTLAAPGDVVV 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           VAG+GH+ V       +++  D   + E L
Sbjct: 468 VAGRGHDRVQAYGP-RRRVFDDRIALHEAL 496


>gi|158834102|gb|ABW81856.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 284

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 99/280 (35%), Positives = 141/280 (50%), Gaps = 7/280 (2%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TT S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH
Sbjct: 7   ENTTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYH 66

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKF 276
                Y  AK +LF     KE    I ADD   +  + +  +A        +   ++G++
Sbjct: 67  GDMARYEAAKWQLFSTHHAKEKI--INADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           +  K +        +       +   +  L G F V N L+A    +A+      ++  +
Sbjct: 125 LETKNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDR-PTVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           GKR +MG IA   AD  +VTDDNPR+EDP  I A+I+ G+
Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGL 283


>gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
 gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
          Length = 503

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 159/407 (39%), Gaps = 30/407 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDTMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+A+GA  ++V               + P +VVDNT   L+  A+ +       +LA+
Sbjct: 55  TEAVARGASGVLVDR--------LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   ++     
Sbjct: 107 TGSNGKTSVKALLLSILQEAGRVDG-----TTVYATPGNRNNEIGLPLAV---IAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  +  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++  +      RVL  G Q    I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++ + L +   V GR +   T   G 
Sbjct: 278 QGEAPIALPLPGRHNVLNALAATGLALGAGIALPVIADGLAQARAVAGR-QIAQTLPNGA 336

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            +  D Y     S      +      G   +V G   +       + 
Sbjct: 337 VLIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRELGAEGVALH 382


>gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 460

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/461 (18%), Positives = 168/461 (36%), Gaps = 39/461 (8%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L+  L        + ++  V++DSR ++ G IFVA  G + DGH F  +A+ QGAE +
Sbjct: 7   SKLLAGLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYV 66

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV+                  ++  ++   + +  +    ++   ++ VTG+ GK++   
Sbjct: 67  VVNHPVPGVPEEKA-------ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQ 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                    G          T  +          + + + + L  L S     V     S
Sbjct: 120 MTYAALSGFGE------TIKTEGN--------QNNELGMPRTLMRLESSTEYAVIEMGMS 165

Query: 192 HGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H  +  RL    +   G  T +G  HI    +Q+    AK+ +   L P+ +P ++  DD
Sbjct: 166 HAGEIDRLARAARPDVGIITCIGVSHIGNLGSQENICKAKLEICNGL-PEGAPLVLNYDD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGE 309
            + ++    AH       S+  +   +    +    +     +   E   F    P  G 
Sbjct: 225 PFLRKAALPAHVRPVW-FSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGR 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL A      +G D+  V+  L        R + V  +S G  +  D Y    +S
Sbjct: 284 HNVANALAAYCAATRLGCDAKRVIRGLSNFEQTGRRQKVV--DSEGVTVIEDCYNANPDS 341

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++  L   +     R   + G   +     +     +G++A +     ++T      E  
Sbjct: 342 MKAALAMFKDFPCKRRFALLGDMLELGELSREAHEELGRLAAESGLYCLIT----YGE-- 395

Query: 426 EKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  R  ++    G   +   +  EA    +  +   D ++V
Sbjct: 396 QAKRTAVVAAAKGVETLHADSYREAADALLSRVQPGDAILV 436


>gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 454

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 173/465 (37%), Gaps = 35/465 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           DL  ++  E +N   I  ++  +   N++S+D+R I+   +FVA+ G   +G+ +   AI
Sbjct: 2   DLNIQEVIEAVNGEII--VKNNDGHFNKISTDTRKIENDNLFVALKGANFNGNTYAVSAI 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA  ++V     ++     ++S   ++ V +T+  L   A     K    ++ +TG++
Sbjct: 60  EKGASVVIVD---EIKFEKEDLKSKGTVIKVKDTKVALGDLARYYRKKLGIKVVGITGST 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    +            +     T  +F                         V  
Sbjct: 117 GKTSTKDLIAAFLS------GKYKVFKTQGNF-------NNEIGLPLMIFELNKDYDVAV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S+ G              + TN+G  HI+Y +T++     KM +  +    +S  
Sbjct: 164 LEMGTSNFGEINTLAGIALPDIAAITNVGVAHIEYLKTRENILKEKMSI-SDFFKDDSCL 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I  ++   K V    H       +   +   ++ K +             + +   F  
Sbjct: 223 VINCENDMLKTVKDEDHKNINIQRTGYDKSYNLYAKNIELTSETTSFDAVYKDECHRFNL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
            + GE  V NAL+   +   +G+    + + L+       R EF+  N     I  D Y 
Sbjct: 283 NMVGEHNVLNALLGIQISKDLGLKFEEMEKGLDNFKATSMRLEFIKHNK--FTIINDSYN 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420
              +S++  +  +++ T  R I V G     GD        +G+ A   ADI + T +  
Sbjct: 341 ANPDSMKAAINVLKSYTGDRKIAVLGTMGELGDYANIAHKEVGEFAKGKADILLTTGEY- 399

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
                   +     G        +  +  I++   M+  +D ++V
Sbjct: 400 --------KDSYKEGFGTNTLVFDTKDDLIKSLNSMIKDEDTILV 436


>gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 460

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 162/464 (34%), Gaps = 34/464 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L+  L        E ++  V++DSR ++ G IFVA  G K DGH F  +A+  GA  +
Sbjct: 7   SKLLAGLVPADFIREEVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYV 66

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV+                  ++  ++   + +  +    ++   ++ VTG+ GK++   
Sbjct: 67  VVNHPVEGVPAEKA-------ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQ 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                    G          T  +          + + + + L  L S     V     S
Sbjct: 120 MTYAALAGFGE------TIKTEGN--------QNNELGMPRTLMRLESNTEYAVIEMGMS 165

Query: 192 HGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H  +  RL    +   G  T +G  HI    +Q+    AK+ +   L P+ +P ++  DD
Sbjct: 166 HAGEIDRLARAARPDVGIITCIGVSHIGNLGSQENICKAKLEICNGL-PEGAPLVLNYDD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            + +     AH                 L           V    E   F    P  G+ 
Sbjct: 225 KFLRAAKLPAHVKPVWFSLADENADVCALSIRQEEDGMSFVLEDQEEGTFVVKIPAMGKH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
            V NAL A      +G D   V++ L        R + V   S+G  +  D Y    +S+
Sbjct: 285 NVANALAAYCAATRLGCDPRGVIKGLSNFEQTGRRQKVVH--SKGVTVIEDCYNANPDSM 342

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +  L   +     R   + G   +     +     +G++A +     +VT      E+ +
Sbjct: 343 KAALAMFKEFPCKRRFALLGDMLELGELSREAHEELGRLAAESDLYCLVT----YGENAK 398

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
           +            +   N  EA    +  +   D L+V A +G 
Sbjct: 399 RTAVVAAAKGVKTLHANNYREAADALLNRIEPGDALLVKASRGM 442


>gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 452

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 164/453 (36%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + +  
Sbjct: 20  QFLNQEINGVTIDSRAISKNMLFIPFEGENVDGHRFVSKALQDGAGAAFYQKGTPIDENV 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           +      PI+ V++T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  SG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L   +   ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDNDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L       I   D+   K  
Sbjct: 175 FLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KDNGTFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   NA C  + V        L       +   ++ ++  K+  +  P+ G+  + NA 
Sbjct: 234 VKEVENAKCISIGV---ATDNALVCCVDDRDTTGISFTINNKE-HYDLPILGKHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  +
Sbjct: 290 IAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 349

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            T+T  RI++   V   G +  +    +   +     D+           + + I     
Sbjct: 350 STLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYT-----FGNEAKYIYDSGQ 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ + I      L   D ++V G
Sbjct: 405 QHVEKAQHFNSKDDMIGVLTSDLKAHDRVLVKG 437


>gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
 gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
          Length = 450

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/451 (20%), Positives = 154/451 (34%), Gaps = 48/451 (10%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L           +  V +D+R +  G +FVA+ G + DGH +  QA+A GA  ++     
Sbjct: 13  LGAEAEGTLPMSVRGVGTDTRALAPGALFVALRGERFDGHDYARQAVAGGAALVIAERPV 72

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +            P L V +T +     A     +    ++AVTG++GK++    ++ + 
Sbjct: 73  A-----------VPHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAGKTTTRELIRAVL 121

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +G      G                         L    +     V +     G    
Sbjct: 122 ATAGPVLAPPG-------------NENNDVGVPKLLLQLTGAHRYCVVEMGMRGPGEIAR 168

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                    G  TN+G  HI    +  A  +AK  L  EL P    A++  +D     ++
Sbjct: 169 LARCAAPNVGVITNVGSAHIGRLGSHAAIADAKCELLAEL-PCSGIAVLNGEDE---RLL 224

Query: 258 KRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             A       VL+ G             + +   V + V+G    F+ PLPG     N L
Sbjct: 225 STARRHWAGPVLTYGLDAGD-------VMGSFDGVHLHVDG--IAFIPPLPGRHNHLNFL 275

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G++   V E L+ L +  GR   +        I   Y     S    L   
Sbjct: 276 AALAVARHLGLELLQVRERLKDLQLPTGRSRVIALEGDVQLIDETYNSAPESARAAL-AW 334

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIM---GKIALDLA-DIAIVTDDNPRSEDPEKIRAEI 432
                GR I V G   +  +  R +    G+    LA D  +V +     ED E + A  
Sbjct: 335 LAGLPGRRIAVLGQMRELGEFSRELHRVLGEHCRRLALDEVVVLE---AGEDTEALLAG- 390

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              +P      +R  A     + +   D L+
Sbjct: 391 AGDLPAVQLADHRAVA-AYLADRVRPGDRLL 420


>gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
 gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
          Length = 452

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 168/473 (35%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELKGADIALDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL  A L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAGAALAMSVGATRDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA--------- 413
             S+   ++ +  +   R++VV      G + +     +         D           
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHA 396

Query: 414 --IVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
             + +       D   + A +   I        + KG+R  A+   +  L + 
Sbjct: 397 IGVASGVGEHFADKTALIAHLKTLIAEQQVITILVKGSRSAAMEEVVRALQEN 449


>gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 454

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 162/453 (35%), Gaps = 45/453 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ + KI+ VS DSR+I    +FV   G   DGH F+ QA+  GA A    +        
Sbjct: 20  QYLQHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQALEDGAGAAFYQNDAKPDHEI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  PI+ VD+T   L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  EG-----PIIWVDDTLLALQELAKAYLKHVNPKVIAVTGSNGKTTTKDMIESVLKPAFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGMPLTI--------------------LQLDEDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +         TN+G  H+    +++    AK  +   L P     I   D+   K  
Sbjct: 175 LLSEIAHPDIAVITNIGESHMQDLGSREGIARAKFEIVSGLKP-GGVFIYDGDEPLLKPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +    +     + +    +   +      H+   +  ++   +  +  P+ G   + NA 
Sbjct: 234 VDTLKDTEAISIGL---AQDNSVVCSVEQHDAMGIAFTLNTNE-HYQIPILGTHNMRNAA 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + E++ K+ +   R E   T+S    I   Y  +  S++  +  +
Sbjct: 290 IAISIGKILGLSYEEIQENISKVKLTGMRMELHRTDSNISVINDAYNASPTSMKAAIDTL 349

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI---VTDDNPRSEDPEKIRAEII 433
             +  GR I++     +  +    +   +   L D  I   +T      ++   I     
Sbjct: 350 AAM-DGRKILILADVLELGENSAEMHASVGDYLQDKGINLLLT----FGDEAVHIYENGK 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +       ++ E I    +    +D +++ G
Sbjct: 405 ANVDEAHHFNHKNELIEFITQHAQAEDEILIKG 437


>gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
 gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
          Length = 461

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 90/483 (18%), Positives = 177/483 (36%), Gaps = 62/483 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
              ++  VS++SR ++ G +FV IVG K D H FIP A+  GA A               
Sbjct: 22  PNAEVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMALDTGAAACFTQQEPE----EGF 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------Q 138
              +  ++ V +T+K L  FA+    +    ++ VTG+ GKSS    +           +
Sbjct: 78  KYLDGAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKSSTKEMIAAALSQGKRVHK 137

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G  + QIG   T+                         +  +  + +  S+ G  +  
Sbjct: 138 TAGNYNSQIGLPLTVFGLDH--------------------THEIAVIEMGMSNFGEMERL 177

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                  +   TN+G  HI+  +TQ+     K+ +  + + ++    +  DD   +++ +
Sbjct: 178 SAIASPTSAVVTNIGISHIEQLKTQENIRAEKLHI-ADTIGEQGALYLNGDDPMLQQLRE 236

Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +   +++  G +         +  + +  +  +         + P  G   V NAL 
Sbjct: 237 ---SYTGKIVWYGMESDCDYRAVNIDTVKDCTRFELHAPFGAHKIMIPALGLHNVSNALA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A  +    G+    +   L     +  R +    +     +  D Y  + +S++  +  +
Sbjct: 294 AIAVAYDQGLTLDDIRCGLLTYEGLAMRQQIHELDK--ITVIDDSYNASPDSIKSGIGVL 351

Query: 377 RTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
             + S G+ I V       G+R       +G  A      A++T       + EKI    
Sbjct: 352 MAVKSTGKKIAVLADMLELGERSAQAHLELGAYAAASGVDAVLT----VGREAEKIAEGA 407

Query: 433 IHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                  + K  G   EA     ++LN  D ++V             G + M  D +I++
Sbjct: 408 AEESRKILVKACGTNDEAFAELEKILNDGDCVLV------------KGSRGMHTD-EIVQ 454

Query: 491 EIL 493
           ++L
Sbjct: 455 KLL 457


>gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
 gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
          Length = 476

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/513 (17%), Positives = 177/513 (34%), Gaps = 62/513 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  +    +     I     + R+I     DSR ++  ++F+ + G K DGH FIP 
Sbjct: 1   MKNMTLEHIAAVCGGTYIGNEADKTREIQGAVIDSRLVEKDYLFIPVRGEKVDGHSFIPS 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +GA A++                  P ++V+NT   +   A+         ++ +TG
Sbjct: 61  VFEKGALAVLSEEKLENPAG--------PYILVENTLDAMKKIAADYRRGLDIKVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T  +   +N +  P  I+  +         V
Sbjct: 113 SVGKTSTKEMIASVLAQ------KYNVLKTEGNL--NNEIGLPLTIFKIRE-----EHQV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G                TN+G  H++   T+     AK   F  L P + 
Sbjct: 160 AVLEMGISEFGEMDRLSTMANPDICVITNIGLCHLENLITRDGILKAKTESFAHLTP-DG 218

Query: 243 PAIIYADDAYSKE-------------VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NK 288
            A++  DD    +             + K A  A     +     K ++   V A+    
Sbjct: 219 IAVLNGDDDKLCDKKVVNGKPAVFYGIEKAAKVAETEEGTKTLAEKTVYATNVEAVDLTG 278

Query: 289 QQVTISVEGKD------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +  I    K+       +   P+ GE  VYNAL A  +   +G+    +   +E +  +
Sbjct: 279 TKAAIHYPSKETGGEVTMEVTIPIAGEHNVYNALAAVSVARELGLTCDEMKRGIESVQTI 338

Query: 343 PGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            GR   +  N  G  I  D Y     S++  +  +     GR I V G  G+    ++ +
Sbjct: 339 GGRSNLIHKN--GITIIDDCYNANPVSMKASIDVLSN-APGRKIAVLGDMGELGAEEKQL 395

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQ 459
              +    A   I           ++I   +             ++ + I+  ++ +   
Sbjct: 396 HYMVGEHFAGKGID-ALYCVGTLSQEITKAVRANSSATEVHHYEDKADLIKDLVKEVKSG 454

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D ++V                      +I++E+
Sbjct: 455 DTVLV-------------KASHFMGFPEIVKEL 474


>gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
 gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
          Length = 476

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 163/480 (33%), Gaps = 52/480 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR    G +FVA VG + DGH F  +
Sbjct: 1   MIALSLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFVGERVDGHDFAAR 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A++ S                P +VV++ +  L   A  + G+    ++A+TG
Sbjct: 61  VVEAGAAAVLASRPV-----------GVPAIVVEDVQAALGALARHVVGRLGTTLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLQRHGPTVFTPGSLNNEIGLPLTALTATEETKFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--K 240
             + + A   G  ++         G   N+G  HI     ++    AK  L E L P  +
Sbjct: 158 -VLEMGARGIGHIRYLTGLTPPRVGLVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ-QVTISVEGK 298
              AI+ ADD   + +  R      +V+  G      +  + V    + Q    +     
Sbjct: 217 GGAAILNADDPLVRAMASRTK---AKVILFGESDEADVRAENVRLTDSGQPSFRLHTPSG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  +
Sbjct: 274 ACDVTMRLYGEHHVSNALAAAAVAHELGMPADEIARALSEAGSLSRWRMEVTERPDGVTV 333

Query: 359 YVD-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGGDRDQGKRPIMGKIA----- 406
             D Y     S+   L+ +  +        GR   V G   +           +      
Sbjct: 334 VNDAYNANPESMRAALRALAAMGKASQAKGGRTWAVLGKMAELGDEALAEHDAVGRLAVR 393

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+++ +  V       E           G      +   +   A+      L   DV++V
Sbjct: 394 LNVSKLVAVGG----REAAWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 449


>gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 456

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 174/467 (37%), Gaps = 50/467 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK+Q        E+   L+I    +W +  I  V  DSR I++G +F+ +V    DGH +
Sbjct: 1   MKMQ------LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  AI  GA A +       +D S  I  +  +L V +T   L         K    ++A
Sbjct: 54  VEAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++       +         Q     T ++F  +  +           LS   +
Sbjct: 109 ITGSNGKTTTKDMTAAVLAT------QFNVHKTFANFNNEIGVP-------MTILSMEPN 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  V +    +G         +      T +G  HI++  T+    +AKM +    L 
Sbjct: 156 TEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEI-THGLK 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++   +I  D+     +  +A      VL+ G      +    + +   K    ++    
Sbjct: 215 EDGELVINGDEPL---LTTKAKEVSQEVLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WP 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + DF   + G + V+NAL A  +     I    + + L    +   R E++     G +I
Sbjct: 271 EVDFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAK-NGAKI 329

Query: 359 YVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             D Y     +++ +L     +   G+ I+V G   +  +    +   +A          
Sbjct: 330 LSDVYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSDLAQ--------- 380

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVL 462
             NP   D   +  E++  +   + EK +      T I    K D+L
Sbjct: 381 AINPDRIDSVYLCGELMGYLAEKLREKFD-----ETQIHHYQKDDLL 422


>gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 466

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 141/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G  F+A+ G + D H F+ Q  A G +  +V     +    
Sbjct: 31  QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                +   LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + AS  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGASHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     ++    AK  ++  +LP    AI+   D ++ E++  A  
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILP-NGVAIVPQQDDFTAEILDAAKA 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  VG     ++   V  +      ++           P  GE  V NA  A    
Sbjct: 248 HRISTFGVG---GDVYATDVELLPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +AIGI    +++ LE+     GR  F+  +     I   Y     S+    + +      
Sbjct: 305 LAIGIGLEDIVQGLEQAQGAKGRLNFIQKSPYLF-IDDTYNANPTSMRAAAQVLLQQQGV 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHYDLGRDLAELPLDHII 398


>gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 483

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 103/455 (22%), Positives = 183/455 (40%), Gaps = 45/455 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++      +  N++     QW++ ++  VS DSRH++ G +F+ + G   DGH ++
Sbjct: 27  MKLAEIAKAINAQ--NEIE----QWKDIEVTSVSFDSRHLERGALFIPLQGAH-DGHQYV 79

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A + +S + L +      +  P+LVV +  K L         K    ++AV
Sbjct: 80  ETAFTNGAAATLWASDHELTN------NGHPVLVVTDPLKALQQLGKYYLHKINPIVVAV 133

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I         Q+  T T ++F  +  +           L+  ++ 
Sbjct: 134 TGSNGKTTTKDMIASILST------QLNVTKTYANFNNEIGVP-------VTLLNMEANT 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G        +       T +G  HI++  T+    +AKM +   L  K
Sbjct: 181 EVVVVEMGMDRFGQLDFLSKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGL--K 238

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
           E   ++Y  D     + +RA     +    G Q    ++   V A        ++ E  D
Sbjct: 239 EDGLLVYDGDE--PLLNERAAKVAQQTSRFGRQLTDDLYATSVTAGPRSISFKVN-EWPD 295

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ GE+ V NAL A  +   + I  A +   L  + +   R E+  +   G +I 
Sbjct: 296 EQFTIPMVGEYNVNNALAAMVVAKRLHISPAHIKTALANVELTENRAEWFKSK-NGAQIL 354

Query: 360 VD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            D Y     + + +LK +  +   GR I V G   +       +   +A         T+
Sbjct: 355 SDVYNSNPTAAKQVLKTLAAMPVQGRRIAVLGDMLELGDAAPRLHASLA---------TE 405

Query: 418 DNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
            NP   ++   I  E++H     +E+G    AI  
Sbjct: 406 INPAQIQEVYLIGTEMVHLQSKLLEQGYPATAIHY 440


>gi|225377874|ref|ZP_03755095.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
 gi|225210312|gb|EEG92666.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
          Length = 337

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 140/346 (40%), Gaps = 35/346 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L+ +   E +           +RKI ++   S  ++ G +FV I G + +GH ++PQ
Sbjct: 4   LRSLLKQILYESVRGDD-------DRKITDICCHSEKVKEGSLFVCINGYRNNGHEYVPQ 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATI---------------RSNTPILVVDNTRKFLSLFAS 107
           A+  GA  +VV   Y ++  S  +                 N  ++ V +TRK LS  ++
Sbjct: 57  AVEHGAAVLVVDDRYVIESRSGPVILTEHMKVNVYELIRDRNICVVAVRDTRKALSALSA 116

Query: 108 RLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTT 164
             +    E   ++ +TGT+GK++ A     I Q +G     IG   S      +  + TT
Sbjct: 117 AFFDHPAERMKMIGITGTNGKTTTAFLTAGILQEAGYRVGMIGTIESYDGRRRETVKNTT 176

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQT 222
           P    + + LS +         +E SS G+   R   I    G F N+  DHI    H T
Sbjct: 177 PESCEIHRLLSRMVENECDCCVMEVSSQGIALQRTADIFFDIGVFLNIEPDHIGKGEHAT 236

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y   K RL  +        I+  DD    +++   H       S+ +    +   + 
Sbjct: 237 FSEYLYCKSRLMRQC----GIGIVNQDDPNVDKILA-GHTCEVENFSIRHPSDVMAEDEW 291

Query: 283 CAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             + +       T+  E +  D +  LPG+F +YNAL A  +    
Sbjct: 292 YGMESGSLQSHFTVKREWRREDIVMQLPGQFNIYNALAAISVAGHF 337


>gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 466

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 143/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G +F+A+ G + D H F+ Q  A G +  +V     +    
Sbjct: 31  QIPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                +   LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----DIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + AS  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQFAVMELGASHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     ++    AK  ++  +LP    AI+   D ++ E+ K A  
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILP-NGVAIVPQQDDFTAEIHKAAQA 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  VG     I+   +  +      T+           P  GE  V NA  A    
Sbjct: 248 HRISTFGVG---GDIYATDIELLPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+GI    +++ LE+     GR  F+  +     I   Y    NS+    + +      
Sbjct: 305 LALGIGLEDIVQGLEQAQGAKGRLNFIQKSPYLF-IDDTYNANPNSMRAAAQVLLQQQGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGHDLAQLPLDHII 398


>gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 466

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 140/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G  F+A+ G + D H F+ Q  A G +  +V     +    
Sbjct: 31  QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                +   LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + AS  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGASHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     ++    AK  ++  +LP    AI+   D ++ E++  A  
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILP-NGVAIVPQQDDFTAEILDAAKA 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  VG     ++   V  +       +           P  GE  V NA  A    
Sbjct: 248 HRISTFGVG---GDVYATDVELLPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +AIGI    +++ LE+     GR  F+  +     I   Y     S+    + +      
Sbjct: 305 LAIGIGLEDIVQGLEQAQGAKGRLNFIQKSPYLF-IDDTYNANPTSMRAAAQVLLQQQGV 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHII 398


>gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
 gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
          Length = 466

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 98/481 (20%), Positives = 174/481 (36%), Gaps = 54/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK   +  KD  + +  +  F    R  +I+ V  DSR I  G +FV + G   DGH +I
Sbjct: 1   MKPTQI--KDIVKAVEAID-FTSTARFTEIDSVEFDSRLITPGALFVPLKGA-TDGHSYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI  GA A + S+               PI+ V++T   +  FA    G     ++ +
Sbjct: 57  DKAIENGAVAALWSND------PNEAPVGFPIIQVEDTLVAMQAFAKAYLGWIKPKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG+SGK++           +       G  +  IG   TI    +D              
Sbjct: 111 TGSSGKTTTKDMTAAALSTALKVHKTNGNYNNDIGLPKTILDMPEDTE------------ 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V  + +  S  G         +      T +G +HI++  +++    AK+ +
Sbjct: 159 --------VIVLEMGMSGAGEISFLSKLAEPDVVVITMIGENHIEFLGSRENIAKAKLEI 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + L  +E   I   D+     V +   +     L++G             +   Q    
Sbjct: 211 LDGL-KEEGTFIYPGDEPLI--VDQMPTDLKQSTLTIGLNDDHDIFAFDVMMDQFQSTFY 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +     PL G + V NAL A G+  + G+    V  +L +  + P R  +     
Sbjct: 268 TNLSPELKMEIPLSGGYNVQNALYALGVAYSFGLSMEQVRPNLAEFSITPDRGSWERGIL 327

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVV----FGCGGDRDQGKRPIMGKIA 406
               +   Y  + ++++ +++N   I S    + I+V       G   D+  R I   I 
Sbjct: 328 DTQILNDTYNASPSAMKAVIRNFSAIASKGMSQKILVLGDMLELGAFSDELHREIATVIG 387

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEA-IRTAIEMLNKQDVLV 463
           L+      +    PR +      A I  G+         +  EA I     +L  +D ++
Sbjct: 388 LNTFKHVFLYG--PRIQPLVD--ALIEKGMHPDLITYIESDKEALIEQVKAILQPEDKVL 443

Query: 464 V 464
           V
Sbjct: 444 V 444


>gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 452

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 99/462 (21%), Positives = 173/462 (37%), Gaps = 42/462 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV++D+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V++TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +                      L          + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTKEHQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++  L P+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLQAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI----VTDDNPR------ 421
            +  +   R +VV      G +     R +         D  +    ++ D  R      
Sbjct: 346 VLSEMPGFRTMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGALSADISRASGVGE 405

Query: 422 -SEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLN 457
              D   + A +      H I   + KG+R  A+   +  L 
Sbjct: 406 HFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQ 447


>gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
 gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
          Length = 457

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 97/445 (21%), Positives = 179/445 (40%), Gaps = 47/445 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I+ +++DSR+I  G IF+A+ GN  DGH F   A+ +GA A++V         S   
Sbjct: 27  DFLIDGITTDSRYINPGEIFLALRGNTFDGHDFANIAVDKGAIALIVDH-----HISVKS 81

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P + V +T       A     +    ++A+TG+ GK++    +  +    G+    
Sbjct: 82  TKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIV--- 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKL 204
                         +    + I + K L  L+ Q   +  +E    GL++  L     + 
Sbjct: 139 -----------HKTKENYNNEIGVPKTLLELTRQH-DYAVIEMGMRGLNEIALLSQIARP 186

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI    +++A   AK  L  E +P ++ AI   D++   +  K+     
Sbjct: 187 TIGLITNVGTAHIGRLGSKEAIAQAKCELLAE-MPPDATAIFNHDNSLLVQTAKKVWKG- 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              +S G +G  I  + +         T+ VEG DF    PLPG     N L A  +   
Sbjct: 245 -ETISYGLEGGDITGELLDNQ------TLRVEGMDFP--LPLPGRHNALNYLGAIAVAKC 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           + +D  ++++ +  +++  GR      +     +   Y     S++  L+ ++ I   R 
Sbjct: 296 LKLDCNVLMQGIS-VNLPKGRSRRYQLSGDILLLDETYNAGLESMKAALELLKEIPGQRH 354

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD----LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + G   +  +    +  ++         D  +V  D     DPE I   I  G  G +
Sbjct: 355 LAILGTMKELGEKSAELHREVGETAKALGIDHLLVLVD-----DPEAIA--IADGALGMV 407

Query: 441 EK--GNRIEAIRTAIEMLNKQDVLV 463
            +    + E I+   E++   D L+
Sbjct: 408 TECLPTQEELIKRLTEIVQPGDRLL 432


>gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
 gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
          Length = 456

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 184/471 (39%), Gaps = 48/471 (10%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           ++     +++ I  VS+D+R IQ   +F+ +VG K DGH F   A+ +GA A +    + 
Sbjct: 16  TLVTTSMKDKIIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDAVKKGAVATLWDKRHP 75

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A I      ++VDNT +     AS         ++ +TG++GK+     +  I +
Sbjct: 76  TPYLDAGI------IIVDNTLQAYQKLASSYLKATGAKVVGITGSNGKTGTKDILASILK 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                         + + A++       P  +   +       V  + +     G  +  
Sbjct: 130 E----------NFRVHNTAKNLNNEIGVPKTI---MEMDLDDEVVVLEMGMERFGEIKTL 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            +  +      TN+G  H+    T++    AK  + E L P +   I   DD   +EV+K
Sbjct: 177 TNIARPDIAVITNIGDSHLLELGTKENIARAKFEILEGLKP-DGVFIFNNDDEVLREVIK 235

Query: 259 RAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             +    +V+ +G  +   + ++ + +       +I     ++ +  P  G+ Q+YNA V
Sbjct: 236 E-YTITQKVIKIGTREDSDVIIRPIRSDEEGSSFSI----GEYAYSIPFIGKHQIYNASV 290

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   +G++   ++  L ++ +   R E +  +S    +   Y     SL   ++ + 
Sbjct: 291 AITIAGLLGMNYGDIVRGLSRVKLTGMRMELIHLSSFD-VLNDCYKSNPQSLTSCIETVY 349

Query: 378 TITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSEDPEKIRAEI 432
           T+      I++     +  + +R +   +   +     D  I   D         +  EI
Sbjct: 350 TMKGYKNKILILSDMLELGENERKLHFSVGEKIDRNKIDYVICIGD---------LAKEI 400

Query: 433 IHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
            +G      +          E +    E++++  +++V G +G +   I+ 
Sbjct: 401 YNGANRNFNVNNLFHFETNEEVVNKVRELISEDTLIMVKGSRGMKLEKIIE 451


>gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
 gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
          Length = 463

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 158/411 (38%), Gaps = 25/411 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  D   + + L++   + + +++  +++D+R I+AG +F+AI G   DGH F+ QA+A
Sbjct: 1   MIPMDLNWIASVLAVS-FEGQNQQVLNINTDTRTIKAGEVFLAIKGPNFDGHKFVEQAVA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A++V  +  +Q          P  +V + R  L    + +  +     +A+TG+ G
Sbjct: 60  QGAVAVIVDHSVKVQ---------VPQFIVPDARLALGKLGAAVMAEVNPKTIAITGSVG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I  + G         +T  +F  D  +           L          +
Sbjct: 111 KTTVKEMCAAILSQHGE------VLATKGNFNNDIGVP-------LTLLRLEPKHQYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  D +K       N+   HI+   +      AK  +F  L      A+
Sbjct: 158 ELGANHIGEIAYTTDLVKPDVAVVCNVAAAHIEGFGSLDGVAQAKGEIFSGL-KAGGIAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I AD  Y    +     +     S+  Q              +    +    +      P
Sbjct: 217 INADSPYVDYWLTSLDKSTLCQFSMSQQLDVWPENIHLDKLGRAGFDLCTPTERIAVQLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+  + NAL+A  L + +G+  A V + L  + +V GR   +  N     I   Y   
Sbjct: 277 IAGKHNITNALIACALTLPLGVTLAHVAQGLASMPMVQGRVNLIEVNDSLTVIDDTYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             S++  +  +  I  G  I  FG  G+     R    ++ L      I T
Sbjct: 337 VQSVKAGIDLLGQI-EGHQIFAFGDMGELGADARQYHEEVGLYAQQKGIDT 386


>gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
 gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
          Length = 452

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 173/463 (37%), Gaps = 42/463 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV+SD+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +                      L          + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTKEHQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++  L P+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLHTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI----VTDDNPR------ 421
            +  +   R +VV      G +     R +         D  +    ++ D  R      
Sbjct: 346 VLSEMPGFRAMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGTLSADISRASGVGE 405

Query: 422 -SEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNK 458
              D   + A +      H I   + KG+R  A+   +  L +
Sbjct: 406 HFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
 gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
          Length = 449

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 181/475 (38%), Gaps = 52/475 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+++++I     +L++          E  +N  + D+R I++G +++ +VG   DGH +I
Sbjct: 1   MQIKEIIEATNGQLLSG-------DMEYDVNGFTQDTRKIESGNMYIPLVGENADGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA +I+ +      D +        +++V +T + +S  A  L       ++ +
Sbjct: 54  AQAFNLGASSIITAHKVHYPDKN--------VILVKDTLQAMSDMAKYLRMHRQVKVVGI 105

Query: 121 TGTSGKSSVASFVQQI-------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG+ GK+S    +  +        +  G  +  IG   TI                    
Sbjct: 106 TGSVGKTSTKDMIYSVVSTKYKTLKTLGNYNNHIGLPLTIL------------------- 146

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              L ++ V  + +  +  G  +H          + TN+G  HI    +++    AKM +
Sbjct: 147 --RLQNEEVMILEMGMNHLGEIEHLTQIALPDVAAITNIGTAHIGELGSREKILQAKMEI 204

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
              L   +   +I  D+    +++   +     ++ VG      +    V          
Sbjct: 205 VNGL-KSDGTLVINDDN----DMLHTVNAENYHMIRVGQNEDCDLKAIDVELRLEDSYFD 259

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I  +G+ +    P+ GE  VYNAL+A  + +++ ID  L +  +E   +   R + +   
Sbjct: 260 IDYQGQRYHVHVPVSGEHFVYNALIAIAIGLSLDIDMNLCIAGVEHFELTKNRMDMIELK 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I   Y    +S++  L  +      R I V     +  + ++ +  ++   + + 
Sbjct: 320 DNIKVIDGTYNANLDSMKSSL-AVLAQYPKRKIAVLADMLELGEYEQALHEEVGSYVVEK 378

Query: 413 AIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            I  +     E    I  +    G+       +    +    EML  +D +++ G
Sbjct: 379 NID-ELLCVGEASCYIVEKAQSLGLKNAYHFEDNQALMTYLDEMLEPEDTILIKG 432


>gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 456

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 174/467 (37%), Gaps = 50/467 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK+Q        E+   L+I    +W +  I  V  DSR I++G +F+ +V    DGH +
Sbjct: 1   MKMQ------LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  AI  GA A +       +D S  I  +  +L V +T   L         K    ++A
Sbjct: 54  VEAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++       +         Q     T ++F  +  +           LS   +
Sbjct: 109 ITGSNGKTTTKDMTAAVLAT------QFNVHKTFANFNNEIGVP-------MTILSMEPN 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  V +    +G         +      T +G  HI++  T+    +AKM +    L 
Sbjct: 156 TEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEI-THGLK 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++   +I  D+     +  +A      VL+ G      +    + +   K    ++    
Sbjct: 215 EDGELVINGDEPL---LTTKAKEVSQEVLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WP 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + DF   + G + V+NAL A  +     I    + + L    +   R E++     G +I
Sbjct: 271 EVDFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAK-NGAKI 329

Query: 359 YVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             D Y     +++ +L     +   G+ I+V G   +  +    +   +A          
Sbjct: 330 LSDVYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHNNLAQ--------- 380

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVL 462
             NP   D   +  E++  +   + EK +      T I    K D+L
Sbjct: 381 AINPDRIDSVYLCGELMGHLAEKLREKFD-----ETQIHHYQKDDLL 422


>gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
 gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
          Length = 476

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/440 (21%), Positives = 158/440 (35%), Gaps = 32/440 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +F A+ G + DGH F+ QA+ +GA  +VV   Y++   S   R    ++ V
Sbjct: 36  DSRRVHPGDLFWALKGERFDGHDFVHQAVREGASGVVVQREYTI---SVENRPEIAVIAV 92

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           DNT + L   A+    +H   + A+TG+SGK++       I +    +    G  + +  
Sbjct: 93  DNTLRALGDLAAWWRRQHTAKLAAITGSSGKTTAKEMTAAILEMENKTLKNPGNHNNL-- 150

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGR 214
                       I L   L  L       V     +H  +  RL  I      +  N+G 
Sbjct: 151 ------------IGLPVTLLKLDESHKRAVVEMGMNHKGEIARLTEIAGPDTAAILNVGM 198

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H++          AK  L     P ++  I+  DDA    +MK A     + ++ G + 
Sbjct: 199 AHLERLGDMDGVAEAKTELIAHASP-DTKIILNGDDAV---LMKHATKFDRKFVTFGMKK 254

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALV 332
                         + +   +   D  +   LP      V NAL AA + +++      +
Sbjct: 255 GNHIHAVNIETKGLKGIRFDLRWSDDTWPIQLPVSGVHNVKNALAAAAIALSLKEPVENI 314

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIV---- 386
              L     V GRF+ +        I   Y    ++LE  L +   +    GR+IV    
Sbjct: 315 ARGLRNFKGVKGRFQCIPLEGDIILIDDTYNANPSALETALLSALKMVDRDGRLIVGLGD 374

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           +   G       R    +IA   A        +        I A +        E  + +
Sbjct: 375 MLELGEAAVSAHREAGSRIAESGASRLFFMGTHGEHVRNGAIAAGMPSNHVIISETHDEL 434

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
            A    I     +DV+ + G
Sbjct: 435 TA--NIIRKARPKDVIFLKG 452


>gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
          Length = 453

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/463 (20%), Positives = 175/463 (37%), Gaps = 47/463 (10%)

Query: 12  PELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            +L   L++ P    +R I   +++D+R+++ G +FVA+ G   DGH F+ +A+  GA A
Sbjct: 8   AQLAEILAVAPPVQSDRAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGAIA 67

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VV  ++  +        + P+L V++T K     A     +    ++AVTG+ GK++  
Sbjct: 68  AVVDRSWESEGL------DLPLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTK 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +              +T  +  +               L    S     + +   
Sbjct: 122 ELIAAVL-------------TTKGNVLKTQLNYNNEIGVPKTLLELSESHHYAVIEMGMR 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           + G         +      TN+G  HI    +++A   AK  L  E +P +S AI+ +D+
Sbjct: 169 ASGEIAFLTQIARPTIAVITNVGTAHIGRLGSREAIAQAKCELLAE-MPNDSIAILNSDN 227

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A    +   A       L+ G +   +  + +         TIS++    +   PLPG  
Sbjct: 228 ALL--MATAAKVWQGETLAYGLEKGNLCPELIDDR------TISID--SINLPLPLPGRH 277

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  +   +G+    +   L  + +  GR +     +    +   Y     S+ 
Sbjct: 278 NAVNYLAALAVAKVLGVSWEPLKGGLS-VDLPSGRAKRYELANDIVILDETYNAGLESMI 336

Query: 371 MILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPE 426
             LK +      R I V G      +R       +G+ A +L  D   +  D    E+  
Sbjct: 337 AALKLLADTPGKRHIAVLGTMKELGERSLEFHRQVGEKARELNLDALFILAD---FEEAS 393

Query: 427 KIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLV 463
            I      G+P F+E G+      R    +   E +   D ++
Sbjct: 394 AIATG-AAGLP-FVELGDITQVDAREMMAKRLQEFVKAGDRIL 434


>gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
 gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
          Length = 456

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 174/467 (37%), Gaps = 50/467 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK+Q        E+   L+I    +W +  I  V  DSR I++G +F+ +V    DGH +
Sbjct: 1   MKMQ------LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  AI  GA A +       +D S  I  +  +L V +T   L         K    ++A
Sbjct: 54  VEAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++       +         Q     T ++F  +  +           LS   +
Sbjct: 109 ITGSNGKTTTKDMTAAVLAT------QFNVHKTFANFNNEIGVP-------MTILSMEPN 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  V +    +G         +      T +G  HI++  T+    +AKM +    L 
Sbjct: 156 TEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEI-THGLK 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++   +I  D+     +  +A      VL+ G      +    + +   K    ++    
Sbjct: 215 EDGELVINGDEPL---LTTKAKEVSQEVLTFGSLDNNDMCAMDIVSDATKTSFKVAT-WP 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + DF   + G + V+NAL A  +     I    + + L    +   R E++     G +I
Sbjct: 271 EVDFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAK-NGAKI 329

Query: 359 YVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             D Y     +++ +L     +   G+ I+V G   +  +    +   +A          
Sbjct: 330 LSDVYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSNLAQ--------- 380

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVL 462
             NP   D   +  E++  +   + EK +      T I    K D+L
Sbjct: 381 AINPDRIDSVYLCGELMGHLAEKLREKFD-----ETQIHHYQKDDLL 422


>gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
 gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
          Length = 466

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 141/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G  F+A+ G + D H F+ Q  A G +  +V     ++   
Sbjct: 31  QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + AS  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGASHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     ++    AK  ++  +LP    AI+   D ++ E++  A  
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILP-NGVAIVPQQDDFTAEILDAAKA 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  VG     ++   +  +      T+           P  GE  V NA  A    
Sbjct: 248 HRISTFGVG---GDVYATDIELLPQSTNFTLHTPQGISAVKLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +AIGI    +++ LE+     GR  F+  +     I   Y     S+    + +      
Sbjct: 305 LAIGIGLEDIVQGLEQAQGAKGRLNFIQKSPYLF-IDDTYNANPTSMRAAAQVLLQQQGL 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHII 398


>gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius CECT 5713]
          Length = 456

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 156/411 (37%), Gaps = 35/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK+Q        E+   L+I    +W +  I  V  DSR I++G +F+ +V    DGH +
Sbjct: 1   MKMQ------LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  AI  GA A +       +D S  I  +  +L V +T   L         K    ++A
Sbjct: 54  VEAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++       +         Q     T ++F  +  +           LS   +
Sbjct: 109 ITGSNGKTTTKDMTAAVLAT------QFNVHKTFANFNNEIGVP-------MTILSMEPN 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  V +    +G         +      T +G  HI++  T+    +AKM +    L 
Sbjct: 156 TEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEI-THGLK 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGK 298
           ++   +I  D+     +  +A      VL+ G      +    + +   K    ++    
Sbjct: 215 EDGELVINGDEPL---LTTKAKEVSQEVLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WP 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + DF   + G + V+NAL A  +     I    + + L    +   R E++     G +I
Sbjct: 271 EVDFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAK-NGAKI 329

Query: 359 YVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             D Y     +++ +L     +   G+ I+V G   +  +    +   +A 
Sbjct: 330 LSDVYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSDLAQ 380


>gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 454

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 181/475 (38%), Gaps = 42/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + ++  K   E I+       Q+ + +I  V+ DSRHIQ G +F+   G   DGH +  Q
Sbjct: 1   MINITLKQLAEWIDC--DIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A          D + T  +N P++ V+NT   L   A          ++AVTG
Sbjct: 59  ALNDGAGATFFQR-----DSTLTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTG 113

Query: 123 TSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           ++GK++    ++ +        +  G  + +IG   TI                    L 
Sbjct: 114 SNGKTTTKDMLENVLSGKFRVQKTQGNYNNEIGMPLTI--------------------LE 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V+ + +  S     +   +  +      TN+G  H+    +++    AK  +  
Sbjct: 154 LNEDTEVSILEMGMSGFHEIELLSNIAQPDFAVITNIGESHMQDLGSREGIAKAKFEIVS 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L   E   I   D+   K  ++   +A    +SVG   K   ++     H ++ +T +V
Sbjct: 214 GL-KSEGYFIYDGDEPLLKPHVETLTSAHQ--VSVGLSAK-NDMQCQMVSHLEEGITFTV 269

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D  +  P+ GE  + NA +A  +   +G+    + + L  L +   R +     +  
Sbjct: 270 ND-DVTYTIPILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPNGA 328

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I   Y  +  S++  +  + +   G  I+V G   +  +  R +   +   L +  I 
Sbjct: 329 MVINDAYNASPTSMKAAIDTL-SHMKGETILVLGDVLELGEQSRQLHESVGAYLENKGIH 387

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
                  E    I  +    +   I    + + +R    ++ +  V++V A +G 
Sbjct: 388 -QLYTFGEGAMAIHEKGKAYVNEAIHFDQKDKLMRYLTSIVEQHSVVLVKASRGM 441


>gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
 gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis]
 gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
          Length = 472

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 157/416 (37%), Gaps = 34/416 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L++ +    +         VS DSR +  G IF  I  N+ DGH F  QA+A+GA A+V+
Sbjct: 10  LLSAMDGVAIGCLPESFPGVSIDSRTLVKGDIFFCIK-NRLDGHDFAAQALARGAGALVI 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +        + + P++VV +  K L   A     +    I+AVTG+ GK++    +
Sbjct: 69  ----AQNRLDDMKQLSAPLIVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKTTTKEAL 124

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH- 192
           +++ Q  G     I               +  +   +   L+ +       +     +H 
Sbjct: 125 KKVLQTVGKVHANI--------------ASFNNCWGVPLTLAQMPLDSDYGIFEIGMNHK 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              +  +  +       T++   HI++ +  +   +AK  +FE L  K   AI+ AD  +
Sbjct: 171 DEIRSLVKLVCPHVALITHIAAGHIEFFKNLEEIADAKAEIFEGLDNK-GIAILNADSDF 229

Query: 253 SKEVMKRAHNAGC-RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              ++++A      ++LS G         K++C + N   +T+   G+D       PG  
Sbjct: 230 FSYLVQKAEQCNVKKILSFGESDCADYQAKEICLLENHSCMTVRFSGRDVMIKIGAPGRH 289

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
            V N+L     C A+G D + +   L           R+     +     +  + Y    
Sbjct: 290 IVDNSLGVIAACDAVGADLSRIAPALSHFSLPQGRGTRYRLSLPDGEEFHLIDESYNANP 349

Query: 367 NSLEMI---LKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
            S+      L        GR I V       G   ++  R ++  I    A+   +
Sbjct: 350 VSMRAALNLLSIGPVGACGRRIAVLGDMLELGVYSEEFHRALVKPICTSGANPVFL 405


>gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 452

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 173/467 (37%), Gaps = 40/467 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPRGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   V  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTTIKAGLATLKAVPGRLFPVQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGK---- 392

Query: 423 EDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ--DVLVVAG 466
                 R++ I    G  E   ++   I     +L +Q    ++V G
Sbjct: 393 ------RSQAISHASGVGEHFADKAALIARLKALLQEQPMMTILVKG 433


>gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 454

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 89/464 (19%), Positives = 172/464 (37%), Gaps = 38/464 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  L++  +   E  +  V++DSR +  G IFVA  G K DGH F  +A+  GA  +V+
Sbjct: 9   LLEGLAVNALAQCETPVTLVTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVL 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +          +       ++  ++   + +  +    +    ++ VTG+ GK++     
Sbjct: 69  NHPVEGVPEEKS-------VICPDSYHAMMVLGANYRSQFHPKVVGVTGSVGKTTTKQMT 121

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                  G          T  +          + + L + +  +  +    V     SH 
Sbjct: 122 YAAIAGFGS------TIKTEGN--------QNNELGLPRTMFRIGKETQYAVVEMGMSHA 167

Query: 194 LDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +  RL    +   G  T +G  HI    +Q+    AK+ +   L P+ +P ++  DD +
Sbjct: 168 GEIERLSKCARPDVGIITCIGMSHIGNLGSQENICKAKLEICAGL-PEGAPLVLNGDDPF 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQ 311
            ++ +   H       S+G +   +    +          +   E   F    P  G   
Sbjct: 227 LRKAVLPDHVRPVW-FSLGDENADVCALSIQQDEKGMSFVLEDHEEGTFLVKIPAMGRHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V NAL A      +G+++  V+  L        R + V   +RG  +  D Y    +S++
Sbjct: 286 VANALAAYCAATRLGLNARRVIAGLADFEQTGMRQKVVH--ARGVDVIEDCYNANPDSMK 343

Query: 371 MILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L   R     R   + G   +     +     +G+ A++     +VT      E  ++
Sbjct: 344 AALAMFREYPCKRRFALLGDMLELGDISRAAHEEVGRQAVENKVDYLVT----YGEQAKR 399

Query: 428 IR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
           I       G+P  +      +A  T ++ +   D L+V A +G 
Sbjct: 400 IAVVAAAKGLP-TLHADTYAQAAETLLDKMQPGDALLVKASRGM 442


>gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 454

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 93/475 (19%), Positives = 180/475 (37%), Gaps = 42/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + ++  K   E I+       Q+ + +I  V+ DSRHIQ G +F+   G   DGH +  Q
Sbjct: 1   MINITLKQLAEWIDC--DIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A          D + T  +N P++ V+NT   L   A          ++AVTG
Sbjct: 59  ALNDGAGATFFQR-----DSTLTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTG 113

Query: 123 TSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           ++GK++    ++ +        +  G  + +IG   TI                    L 
Sbjct: 114 SNGKTTTKDMLENVLSGKFRVQKTQGNYNNEIGMPLTI--------------------LE 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V+ + +  S     +   +  +      TN+G  H+    +++    AK  +  
Sbjct: 154 LNEDTEVSILEMGMSGFHEIELLSNIAQPDFAVITNIGESHMQDLGSREGIAKAKFEIVS 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L   E   I   D+   K  ++   +A    +SVG   K   ++     H ++ +T +V
Sbjct: 214 GL-KSEGYFIYDGDEPLLKPHVETLTSAHQ--VSVGLSAK-NDMQCQMVSHLEEGITFTV 269

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D  +   + GE  + NA +A  +   +G+    + + L  L +   R +     +  
Sbjct: 270 ND-DVTYTISILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPNGA 328

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I   Y  +  S++  +  + +   G  I+V G   +  +  R +   +   L +  I 
Sbjct: 329 MVINDAYNASPTSMKAAIDTL-SHMKGETILVLGDVLELGEQSRQLHESVGSYLENKGIH 387

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
                  E    I  +    +   I    + + +R    ++ +  V++V A +G 
Sbjct: 388 -QLYTFGEGAMAIHEKGKAYVNEAIHFDQKDKLMRYLTSIVEQHSVVLVKASRGM 441


>gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
 gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
          Length = 505

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 153/395 (38%), Gaps = 29/395 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F AI G++ DGH F+  A   GA   VVS     +   A  R  
Sbjct: 28  ITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRAGAALHVVSE----KRLPALGRMQ 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+    L   A     +    I+AVTG+ GK++    ++Q     G     +  
Sbjct: 84  APMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTKEALRQGLSACGSVHASV-- 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGS 208
                        +  +   +  +L+ L +     +     +H G  +  +  ++  A  
Sbjct: 142 ------------ASFNNHWGVPLSLARLPADSRFAIFEIGMNHPGEIRPLVKLVRPHAAI 189

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-V 267
            T +   H+ + +      +AK  +FE ++P    AII ADDA    +   A  AG   V
Sbjct: 190 VTLIAAAHLGHFRDLDEIADAKAEIFEGIVP-GGSAIINADDAKCMRLAAAAKAAGVTNV 248

Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L+ G  +G    + +         +   + G++      +PG     N L   G     G
Sbjct: 249 LTFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAAHVAG 308

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVD-YAHTSNSLEM---ILKNIRTI 379
            D A V E L +   + GR E       GG    ++ D Y     S+      L N +  
Sbjct: 309 ADIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLANAKLS 368

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +GR I V G   +       +  ++A  L D  I
Sbjct: 369 ENGRRIAVLGDMKELGGHSPTLHAELAEPLKDAGI 403


>gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
 gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
          Length = 452

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 173/463 (37%), Gaps = 42/463 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV+SD+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +                      L          + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTKEHQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++  L P+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI----VTDDNPR------ 421
            +  +   R +VV      G +     R +         D  +    ++ D  R      
Sbjct: 346 VLSEMPGFRAMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGTLSADISRASGVGE 405

Query: 422 -SEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNK 458
              D   + A +      H I   + KG+R  A+   +  L +
Sbjct: 406 HFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP
           32953]
 gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 458

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 103/411 (25%), Positives = 158/411 (38%), Gaps = 32/411 (7%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L+N   I      +  +I EV+ D+R + AG +FVA+ G + DGH F   AIA GA 
Sbjct: 9   LASLLNAEYIVAESVSDDIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAG 68

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++VS           +    P LVV +TR  L  FA+ +  + P  I+A+TG+SGK+SV
Sbjct: 69  ALLVSK---------RLLVGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSV 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 I ++ G   +      T  +F  D  +           L   +      + + A
Sbjct: 120 KEMAAAILRQCGNVLY------TAGNFNNDIGVPL-------TLLRLTAEHDFAVIELGA 166

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G   +  D  +  +    NL   H++   +      AK  +F  L P    AII AD
Sbjct: 167 NHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGL-PANGTAIINAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                   +  HN   RV             +   V         T+           PL
Sbjct: 226 SNDWPHWQETLHNK--RVWRFSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPL 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + NAL AA L +++G D A V + L +L  VPGR   V        +   Y    
Sbjct: 284 PGQHNIANALAAAALAMSVGADLAAVRQGLAQLQAVPGRLFPVPLAEGKLLLDDSYNANV 343

Query: 367 NSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
            S+    + +  +   R++VV      G       R +     L   D  +
Sbjct: 344 GSMIAAAQVLAEMPGYRVMVVGDMAELGETAADCHRQVGEAAKLAGVDKVL 394


>gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
 gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
          Length = 427

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 144/379 (37%), Gaps = 26/379 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ D+R + AG +FVA+ G + DGH F             V++       S  +    P 
Sbjct: 1   MTIDTRKVTAGCLFVALKGERFDGHDFAED---------AVAAGAGALLVSKRLLVGAPQ 51

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +      T
Sbjct: 52  LVVKDTRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLY------T 105

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D  +           L          + + A+  G   +  D  +  +    NL
Sbjct: 106 AGNFNNDIGVPL-------TLLRLSPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNL 158

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271
              H++   +      AK  +F  L P    AII AD        +  HN      S  G
Sbjct: 159 AAAHLEGFGSLAGVAKAKGEIFAGL-PANGTAIINADSNDWPHWQEMLHNKRVWYFSPRG 217

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +    +   V         T+           PLPG   + NAL A  L +++G D A 
Sbjct: 218 AEDIDFYASDVRITPQATHFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAA 277

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           V + L +L  VPGR   +  ++    +   Y     S+    + +  +   R++VV    
Sbjct: 278 VRQGLAQLQAVPGRLFPIQLSAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVLVVGDMA 337

Query: 392 GDRDQ--GKRPIMGKIALD 408
              D        +G+ A  
Sbjct: 338 ELGDTAVDCHRQVGEAARQ 356


>gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
 gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
          Length = 457

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 165/475 (34%), Gaps = 46/475 (9%)

Query: 6   LIYKDFPELINQLSIF--PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   + +      + +  I  VS +SR ++ G +FV   G   DGH F+  A
Sbjct: 1   MIQRTIAQIAGMIPVLNDHSAFSDISIKGVSINSRTMEPGNLFVPFKGEHTDGHRFVEDA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A +                + PILVV++T K +   +     +    +  +TG+
Sbjct: 61  LRKGAAAALWQQDVP------NPPLHLPILVVEDTLKAVQQLSEAYRNELDIKVAGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V     ++         +     T  ++     L                   V 
Sbjct: 115 NGKTTVKDMTARLLSL------RYKVQKTEGNYNNHLGLPLTLLSLE-------EDTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G  +      +      TN+G  H+    ++     AK+ + E L  K+  
Sbjct: 162 VLEMGMSGFGEIEFLTKLARPDVVMITNIGESHLQDLGSRAGIAKAKLEIIEGL--KDDG 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            IIY  D    +     ++   +V S G +G+   +  V     ++         D ++ 
Sbjct: 220 MIIYHGDEPLLKDRLNGYSGPAKVRSFG-KGQSNSIYPVRIDQEEKGSVFQANLSDMEYH 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ G   V NAL A      +GI    + E    L +   R E      +G ++  D Y
Sbjct: 279 LPVLGVHNVMNALCAMEAAHFLGIPYEQMNEGFASLKLTAMRMEL-SEGCKGEKVINDAY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDD 418
             +  S+   +  +  ++   I V+         D +      +G+         ++T  
Sbjct: 338 NASPTSMRAAIDLVSELSGYSIKVLVLADMLELGDDEVRFHREIGQAIDPEKIDYVLT-- 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVVAG 466
                    +   I  G      +  R+ A       I     + N + +++  G
Sbjct: 396 ------FGSLGRVIAEGAQEVFSEE-RVFAFSEKGPLIEKLQSLTNAETIVLFKG 443


>gi|158834108|gb|ABW81859.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 146/294 (49%), Gaps = 10/294 (3%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TT S I + K L++   QG +  ++E SSHGL QHR+  +   A  FTNL RDH+DYH
Sbjct: 7   ENTTGSAIDVQKTLNHFVMQGASFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYH 66

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKF 276
                Y  AK +LF     KE    I ADD   +  + +  +A        +   ++G++
Sbjct: 67  GDMARYEAAKWQLFSTHHAKEKI--INADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           +  + +        +       +   +  L G F V N L+A    +A+      ++  +
Sbjct: 125 LEAQNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  +FGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDR-PTVIVDYAHTPDALEKALVAARLHCKGQLWCLFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIE 447
           GKR +MG IA   AD  +VTDDNPR+EDP  I A+I+ G   I   +   NR E
Sbjct: 244 GKRALMGSIAEQWADHLVVTDDNPRTEDPGSIVADILSGLVEIRHAVVIHNRAE 297


>gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM 10]
 gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis FV-1]
 gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis CO92]
 gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10]
 gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CO92]
 gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D106004]
 gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D182038]
 gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 458

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 103/411 (25%), Positives = 158/411 (38%), Gaps = 32/411 (7%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L+N   I      +  +I EV+ D+R + AG +FVA+ G + DGH F   AIA GA 
Sbjct: 9   LASLLNAEYIVAESVSDDIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAG 68

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++VS           +    P LVV +TR  L  FA+ +  + P  I+A+TG+SGK+SV
Sbjct: 69  ALLVSK---------RLLVGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSV 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 I ++ G   +      T  +F  D  +           L   +      + + A
Sbjct: 120 KEMAAAILRQCGNVLY------TAGNFNNDIGVPL-------TLLRLTAEHDFAVIELGA 166

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G   +  D  +  +    NL   H++   +      AK  +F  L P    AII AD
Sbjct: 167 NHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGL-PANGTAIINAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                   +  HN   RV             +   V         T+           PL
Sbjct: 226 SNDWPHWQETLHNK--RVWRFSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPL 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + NAL AA L +++G D A V + L +L  VPGR   V        +   Y    
Sbjct: 284 PGQHNIANALAAAALAMSVGADLAAVRQGLAQLQAVPGRLFPVPLAEGQLLLDDSYNANV 343

Query: 367 NSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
            S+    + +  +   R++VV      G       R +     L   D  +
Sbjct: 344 GSMIAAAQVLAEMPGYRVMVVGDMAELGETAADCHRQVGEAAKLAGVDKVL 394


>gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           coahuilensis m4-4]
          Length = 456

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 175/468 (37%), Gaps = 56/468 (11%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ++++ ++ V  D+R + AG +FV   G   DGH F+   + +GA A     +      + 
Sbjct: 22  FKDQLVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDVLEKGAGAAFWEKS------AG 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------- 137
                 P++VV+++   L   +     +    ++ VTG++GK++    +  +        
Sbjct: 76  PAPEGLPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKDILFALLSTKYRVH 135

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +  G  +  IG   TI S  +D+                     V  + +  S  G  + 
Sbjct: 136 KTEGNYNNHIGLPLTILSLPEDSE--------------------VAVLEMGMSGFGEIRE 175

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                   A   TN+G  H+    +++    AK  + E L   E   +   D+   +E  
Sbjct: 176 LTQIALPDAAIITNIGESHLQDLGSREGISKAKFEIVEGL-KSEGLFVYNGDEPLLQE-- 232

Query: 258 KRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            R    G    + G +    ++  K+         +++V  ++F    P+ GE  V N +
Sbjct: 233 -RVKGYGGSKETFGRHSSNTMYPTKLAPSGFGTTFSVNVSDEEFH--LPILGEHNVMNTM 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A  +    G+    + + L  L +   R E V T ++G  I  D Y  + +S +  +  
Sbjct: 290 GAMLIAKFFGVGFGDMQKGLSTLKLTGMRLE-VSTGAKGETIINDAYNASPSSTKAAIDL 348

Query: 376 IRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           ++TI T+G+   V     +          + A        VTDD         + + I  
Sbjct: 349 LQTISTTGKRYFVVSDMLELGPN------EEAFHHEVGTYVTDDIDCVLTYGPLSSFIAE 402

Query: 435 GIPGFIEKG-----NRIEA-IRTAIEMLNKQDVLVV-AGKGHETVHIV 475
           G    + +      +   A I     ++   D ++V A +G +   +V
Sbjct: 403 GAKETLPEDRVIHFDEKSALIAYLKVVVKSDDTVLVKASRGMKMEEVV 450


>gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 451

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 175/462 (37%), Gaps = 40/462 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+  + I  V+ DSR I+   +F+   G   DGH F+ QA+  GA A      + + D  
Sbjct: 20  QYLRQTIKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQALKDGAGASFYEKGHDIDD-- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  PI+ VD+T   L   A          ++ VTG++GK++    ++ +       
Sbjct: 78  ---NVKGPIIWVDDTLIALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDMIESVLHTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGLPLTI--------------------LELDLDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              +  +      TN+G  H+    +++    AK  +   L  KE   I   D+   +  
Sbjct: 175 LLSNIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KKEGTFIYDGDEPLLEPH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K+  +A C  LSVG +     + +V    N   +  S+ G +  +  P+ G   + NA 
Sbjct: 234 VKKIKHAKC--LSVGLKQDNALVCEVEHSEND-GIAFSINGNE-HYKLPILGIHNMKNAA 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    +  ++  + +   R E   T+     I   Y  +  S++  +  +
Sbjct: 290 IAIAIGHELGLKYETIQHNINHVQLTGMRMERHITDDDITIINDAYNASPTSMKAAIDTL 349

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             +  GR I+V     +  +  R +  ++   L    I T      +D + I       +
Sbjct: 350 SQM-EGRKIIVLADSLELGENSRSMHEEVGAYLEGKNIHTLL-TYGKDAKYISDIGGQFV 407

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVTN 477
                  ++ +  +  I  L   D ++V G +G++   +V  
Sbjct: 408 DHVEYFIDKQQLTQYLINNLVANDKVLVKGSRGNKLEEVVNK 449


>gi|229139234|ref|ZP_04267809.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|270000495|ref|YP_003329007.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|217065749|gb|ACJ79999.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|228644293|gb|EEL00550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 252

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 11/254 (4%)

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + ADD   +   K        V++ G + G  +  K +       +  +S    + +   
Sbjct: 1   MNADDPSVEYFKKI---TSAEVITYGIHNGADVQAKNITLRPKGIRFLVSSFNGEIEVNL 57

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F VYNAL A  + +  GI    + + L  L  + GR E +  N +   + VDYAH
Sbjct: 58  NLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAH 116

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSED
Sbjct: 117 TPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSED 176

Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P+ I  +I  G        +  + +R  AI  AI M +  D++++AGKGHET  I+ +  
Sbjct: 177 PQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKDST 236

Query: 480 KKMSVDCDIIREIL 493
                D +  R+ +
Sbjct: 237 IH-FDDKEKARQAI 249


>gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 459

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/474 (20%), Positives = 185/474 (39%), Gaps = 42/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +       QW + ++  V+ DSR+++AG +FV + G + DGH 
Sbjct: 1   MKMS------LAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA+A +       +D         P LVVD+  + L         K    ++
Sbjct: 54  YVAKAFENGAKATLW-----AKDHPYDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    V  I         Q+    T ++F  +  +           L+  +
Sbjct: 109 AVTGSNGKTTTKDMVASILAT------QMNVIKTYANFNNEIGVP-------VTLLNMEA 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +     V +     G                T +G  HI++  ++    +AKM +    L
Sbjct: 156 NTEAVVVEMGMDRFGQLDLLSRLTTPDIAVVTMIGEAHIEFFGSRDKIADAKMEI-THGL 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
            ++   +   D+   +E   RA     +  + G Q    ++   V    +    T++ + 
Sbjct: 215 AEDGTFVYDGDEPLLRE---RAAKLSQQTKTFGRQLDDDLYATSVNPDVDHVSFTVN-QW 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D  F  PL GE+ V NAL A  +   + +  A + + L+ + +   R E+V   + G R
Sbjct: 271 PDEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWV-AGANGER 329

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD 411
           I  D Y     +++ +L  + TI  +G+ + V G   +  +    +       I     D
Sbjct: 330 ILSDVYNSNPTAVKEVLATLATIPVAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLD 389

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV 464
              +      +     ++A    G   + +   R  A+  A+   L   DV+++
Sbjct: 390 EVYLIGGEMGALKDALLKAGYPAGQLHYYQAAQRK-ALTDALQASLTTGDVVLL 442


>gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
 gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
          Length = 466

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 146/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q +A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+   AI+   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQ-GVAIVPQQDDFTAEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +++S G +G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 H--QIMSFG-EGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPHLF-IDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 461

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 140/390 (35%), Gaps = 38/390 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I  VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+ +          
Sbjct: 33  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRSIDGVH----- 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-----QRSG 141
               P  VV +    L+  A+    +    I+A+TG++GK++V   +  I         G
Sbjct: 88  ---IPQFVVASPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQPSHATKG 144

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG                         L+           + A+  G   H +  
Sbjct: 145 NLNNHIGVPL--------------------SMLALNKQHRYAVFELGANHPGEIAHTVGI 184

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++       N+   H++   +      +K  + + L P    AI+  DDAY+        
Sbjct: 185 VQPDVSLINNIAPAHVEGFGSIDGVARSKGEIHQGLSPT-GVAIVNDDDAYAHFWDDLIA 243

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +      S  +             H +   T+ +     +    +PG   V NAL AA  
Sbjct: 244 DKKILRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAAC 303

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C A+GI    +   L     V GR   +   ++   I   Y     S+   L+ + +   
Sbjct: 304 CYAVGISGNDIQRGLAHFGGVKGRMTMLSGQNQSTVIDDTYNANLRSVLTALE-VLSGRP 362

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALD 408
           GR I VFG     G+        +G  A  
Sbjct: 363 GRKIFVFGDMGELGEWTTQHHREVGVAARQ 392


>gi|149922806|ref|ZP_01911230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica
           SIR-1]
 gi|149816349|gb|EDM75851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica
           SIR-1]
          Length = 455

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 121/443 (27%), Positives = 189/443 (42%), Gaps = 27/443 (6%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           +V  + +S    +    ++TP LV+    + L + A+  +G   E  ++  +TGT+GK++
Sbjct: 2   VVDEAHFSAAVEADPDLAHTPRLVLRGLGEHLPVLAAAWHGWPGEALSLAGITGTNGKTT 61

Query: 129 VASFVQQICQ--RSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            A  +  I    R G    ++G T             TTP P+ L   L+    +G    
Sbjct: 62  TAHLLGAIASHPRGGRPHLRLGTTGNWLVDREVHAGFTTPFPVELQALLAEAHDRGARCG 121

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L Q R   ++  A + T+  +DH+D+H    AY  AK  L    L  +  A+
Sbjct: 122 VMEVSSHALAQGRAKPLRYRAVALTSFSQDHLDFHPDMAAYLEAKCELARRHLHVDGLAV 181

Query: 246 IYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-----HNKQQVTISV 295
              +     +A+             R              +V A           V ++ 
Sbjct: 182 APLEQGRASEAFLAAAEAAGVERRWRTARSAAGAGAKAQLRVEAQLPLQPGEGTAVRVAT 241

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-R 354
                D   PL G F + N +V   L + +      + + L      PGR E V      
Sbjct: 242 PAGALDLRSPLVGAFNLDNLMVTVALALGLDFGLDTIADALRAATGAPGRLEAVALPGVA 301

Query: 355 GGRIYVDYAHTSNSLEMILKN---IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           G  +YVDYAHT +++   L+     R    GR +VV GCGGDRD  KRP+MG++A   A 
Sbjct: 302 GPAVYVDYAHTPDAVARSLEALEHARRARGGRTVVVLGCGGDRDPSKRPLMGEVASRGAQ 361

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               T DNPR+EDP  I  ++I G           + + +R  AI +AI     +DV+++
Sbjct: 362 RFWATSDNPRTEDPASIVDQMIAGALGPDAGGAELVREVDRARAIASAIAEAAAEDVVLI 421

Query: 465 AGKGHETVHIVTNGEKKMSVDCD 487
           AGKGHE   ++    K    D +
Sbjct: 422 AGKGHEDYQVIGE-TKIHFDDRE 443


>gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
 gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
          Length = 451

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 177/466 (37%), Gaps = 46/466 (9%)

Query: 6   LIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  + P ++++ L         + IN++++D+R I    IF+A+ G K DGH FI  AI
Sbjct: 1   MILSEIPNILSKNLKYLSKPLSNQLINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+GA  ++V         S         ++V +T       A+    K    I+ +TG+ 
Sbjct: 61  AKGAIGVIVDHEV-----SVISSKRITQIIVKDTLIAYQEIANWWRNKLTIPIIGITGSV 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +           G    +     +       P  L   LS  ++     
Sbjct: 116 GKTTTKELIAAVL----------GVYGKVHKTQANYNNEIGVPKTL---LSLTTNHDYAV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +   + G         +   G  TN+G  HI    +++A   AK  L  E +PK+S A
Sbjct: 163 IEMAMRARGEIALLSQIARPTIGIITNVGTAHIGRLGSREAIAEAKCELLAE-MPKDSIA 221

Query: 245 IIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+  DD   + +M+ A      + ++ G +G  I  + +          + VEG DF   
Sbjct: 222 ILNHDD---QRLMETAARIWQGKTITYGLEGGDITGELLDNQ------ILRVEGIDFP-- 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG     N L A  +   + +D  L+ + +  + +  GR +    ++    +   Y 
Sbjct: 271 LPLPGRHNALNYLAALAVTKQLNLDWNLLTQGV-TVDLPKGRSQQYSLSNNIVLLDETYN 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALD-LADIAIVTDDN 419
               S++  L+ ++     R + V G      +        +G +A     D   +  D+
Sbjct: 330 AGLESMKAALQLLKDTPGKRHLAVLGTMKELGEASAQLHQEVGAMAEKLGIDGLYILVDD 389

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
           P           I  G+     +        I    +++   D ++
Sbjct: 390 PE-------AQAITQGVKTIETECFPTHEHLIERLTQVIQPGDRIL 428


>gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
 gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
          Length = 465

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 82/405 (20%), Positives = 153/405 (37%), Gaps = 35/405 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  K+    +  ++    +W +R+I  V+ D+R +    +FV ++GN  DGH FI +A+ 
Sbjct: 5   LTVKEIAMAVGAIND-TSKWSDREITSVNFDTRKLVKDSLFVPLLGNN-DGHNFILKAVE 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA   + S    L+D    + +  PI+ V++T K L   A     K    ++ +TG++G
Sbjct: 63  NGAAVSLWSKP--LKDLPLELENEFPIVQVNDTLKALQDLAKFYLTKVNPKVVGITGSNG 120

Query: 126 KSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           K++       +        +  G  +  IG   TI                    L    
Sbjct: 121 KTTTKDMADAVLSSQYRVHKTQGNFNNHIGLPITI--------------------LEMPI 160

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V  + +  S  G  +   D  K      T +G  HI++  ++    +AKM +   L 
Sbjct: 161 ETEVVILEMGMSRAGEIKVLSDLAKPDVAIITMIGESHIEFFGSRAGIADAKMEICSGL- 219

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +    I   ++   +E +     +  +      +     L         Q   ++ E  
Sbjct: 220 KENGVLIYPGEEPLLQERVAVLKGSQLKTFGTSPENDLYPLN--IDAQMNQTSFVTNERP 277

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G + V NAL A    + +GI        L +  +   R E++   +    +
Sbjct: 278 DLVVSLPVLGTYNVNNALAALMAGMTLGISIEKSAPKLAQFQLTKNRTEWLKGINESSIL 337

Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIM 402
              Y     +++ +L N  T T+ G+ IVV G   +  +    + 
Sbjct: 338 NDAYNANPTAMKAVLDNFSTFTNTGKKIVVLGDMLELGEQSTQLH 382


>gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 459

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/474 (20%), Positives = 182/474 (38%), Gaps = 42/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +       QW + ++  V+ DSR+++AG +FV + G + DGH 
Sbjct: 1   MKMS------LAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA+A +       +D         P LVVD+  + L         K    ++
Sbjct: 54  YVAKAFENGAKATLW-----AKDHPYDPADGYPRLVVDDPLEALQQLGKYYLNKINPIVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    V  I         Q+    T ++F  +  +           L+  +
Sbjct: 109 AVTGSNGKTTTKDMVASILAT------QMNVIKTYANFNNEIGVP-------VTLLNMEA 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +     V +     G                T +G  HI++  ++    +AKM +   L 
Sbjct: 156 NTEAVVVEMGMDRFGQLDLLSRLTTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLA 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
              +       D     + +RA     +  + G Q    ++   V    +    T++ + 
Sbjct: 216 EDGTFVY----DGDEPLLRERAAKLSQQTKTFGRQLDDDLYATSVNPDVDHVSFTVN-QW 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D  F  PL GE+ V NAL A  +   + +  A + + L+ + +   R E+V   + G R
Sbjct: 271 PDEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWV-AGANGER 329

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD 411
           I  D Y     +++ +L  + TI  +G+ + V G   +  +    +       I     D
Sbjct: 330 ILSDVYNSNPTAVKEVLATLATIPVAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLD 389

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV 464
              +      +     ++A    G   + +   R  A+  A+   L   DV+++
Sbjct: 390 EVYLIGGEMGALKDALLKAGYPAGQLHYYQAAQRK-ALTDALQASLTTGDVVLL 442


>gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
 gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
          Length = 456

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 174/473 (36%), Gaps = 46/473 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  ++ N +        +++I+ +++DSR I+   +FV IVG + D H FIP 
Sbjct: 1   MKNLTLRNLTKVCNGIWHGDNALLDQEISAITTDSRKIEKDCLFVPIVGERVDAHRFIPD 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            + +GA A +        D++         + VD + + +   A     +    ++ +TG
Sbjct: 61  VMTKGALATLSERELPEADYA--------YIQVDASLQAVKDIAEFYLEQLQIPVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  + +       +     T  +F                         +
Sbjct: 113 SVGKTSTKEVIASVLKE------KYRTLKTQGNF-------NNELGLPLTVFRLRDEDQI 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G         K      TN+G  H++    +     AK  +F+ + P   
Sbjct: 160 AVLEMGISDFGEMARLTKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQSMKP-NG 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFD 301
             ++  DD   K +  R +N    V       + ++  ++ +         I +    FD
Sbjct: 219 HIVLNGDDD--KLITVREYNGVKPVFFGLNSERDVYADQIESKGLKGVACRIHLGEDAFD 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L P PG   VYNAL AA +    G+    +   +E L  + GRF+ + T  +   +   
Sbjct: 277 VLVPTPGIHMVYNALAAAAVGRIYGLTIEEIRRGIESLETIRGRFKMIET-DKFLVVDDC 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---------KRPIMGKIALDLA-D 411
           Y     S++  L  +      R+ ++   G   +              I G  A     D
Sbjct: 336 YNANPMSMKASLDVLHDGEGRRVAILGDMGELGEDEAALHEGVGIHAAICGIDACVCVGD 395

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A+   +  R  +P+          P + EK  R   +    + + K D ++V
Sbjct: 396 LAVHIAEAARKANPD---------FPVYYEKT-RESLLEHLNDYVQKGDTILV 438


>gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
 gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
          Length = 452

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 173/463 (37%), Gaps = 42/463 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV+SD+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +                      L          + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTKEHQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++  L P+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI----VTDDNPR------ 421
            +  +   R +VV      G +     R +         D  +    ++ D  R      
Sbjct: 346 VLSEMPGFRAMVVGDMAELGAESAACHREVGEVAKAAGLDCVLSVGTLSADISRASGVGE 405

Query: 422 -SEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNK 458
              D   + A +      H I   + KG+R  A+   +  L +
Sbjct: 406 HFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
 gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
          Length = 450

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 148/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV +VG + DGH FI QAI  GA A   S             
Sbjct: 20  TKITNVEFDSRKITEGSLFVPLVGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 73  KDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 127 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +          V
Sbjct: 180 AITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLVQT---V 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 236 TTFGIGNGDVHAE--VTAEGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 292 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 351 AVLADMLELGKDSLNMHAQMSEH 373


>gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
 gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
          Length = 447

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 148/408 (36%), Gaps = 35/408 (8%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                 + E  I+ VS DSR+I  G +F+   G   DGH ++  AI +GA A +      
Sbjct: 17  GTLDAMYEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAIDKGAYAALWQRD-- 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
               +  +  + P++VV++T   L   +     +    ++AVTG++GK++    ++ +  
Sbjct: 75  ----AGEVPRDLPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSNGKTTTKDMIEAVLS 130

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQH 197
                        T  ++         + I L   L  L     ++ + +  S  G    
Sbjct: 131 ------PHFKVKKTQGNY--------NNEIGLPLTLCQLDEDTEISILEMGMSGFGEISL 176

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                +    + TN+G  H+    +++    AK  + + L     P     D+A  K ++
Sbjct: 177 LSHIAEPHIAAITNIGESHMRDLGSREGIAKAKYEITDGL---TGPLFYDGDEALLKPLV 233

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K   +A      +G+     +          Q   +  +  D  ++ P  G     NA +
Sbjct: 234 KDNKDAH----RIGFNEDNEYY---IHEMIMQDKHLQFKVNDDTYIVPTLGSHNARNATI 286

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   +G+    +   L++L +   R E +        I   Y  +  S++  +  + 
Sbjct: 287 AIAIGSYLGLSPEQINHSLQQLKLTGMRMEQLEGKDGALLINDAYNASPTSMKAAIDTVS 346

Query: 378 TITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            + S   I+VF      G D       +   +     D    T +  R
Sbjct: 347 QMDSEVKIIVFGDVLELGEDEVMYHEQVGAYLQGKQIDYVFTTGNAAR 394


>gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. SR1/5]
          Length = 462

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 171/477 (35%), Gaps = 48/477 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  ++ N +   P +  + ++  +++DSR ++ G +FV +VG + D H FIPQ
Sbjct: 1   MKNLTLENITKVCNGIYHGPQEKLQEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A +        D         P + V ++ + +   A     +    ++ +TG
Sbjct: 61  VMEAGALATLSERTLEGADH--------PYIQVGSSLQAVKDIAEFYLEQLDIPVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  + +       +     T  +F  +N L  P  ++  +         +
Sbjct: 113 SVGKTSTKEVIASVLKE------KYRTLKTQGNF--NNELGLPLTVFRLR-----DEDEI 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G         K      TN+G  H++    +     AK  +F+ +     
Sbjct: 160 AVLEMGISDFGEMTRLAKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQYVKRN-- 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---- 298
             ++  DD     V K  ++        G                     I ++GK    
Sbjct: 218 -IVLNGDDDKLSTV-KEYNSMQPVFFGNGENASVTCENVESRGLKGMSCDICLKGKMAEN 275

Query: 299 ----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                F    P+PG   V NAL AA +    G+++  +   +E L  V GRF  + T+  
Sbjct: 276 GEFQTFHVDIPMPGRHMVSNALAAAAVGRLYGLNAEQIKNGIESLEPVSGRFNMIETDK- 334

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLAD 411
              I  D Y     S++  L  ++     ++ ++   G     +      +G  A     
Sbjct: 335 -FMIVDDCYNANPMSMKASLDVLQDGLGRKVAILGDMGELGTDEAALHEGVGVHAGQCRI 393

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLVV 464
            A +            I  +     P       R + + + ++ L       D ++V
Sbjct: 394 DACIC----VGPLAAHIAEKASQTNPDLTVI--REKDLESLLKNLNTYVKPGDTILV 444


>gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
 gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
          Length = 459

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/472 (21%), Positives = 188/472 (39%), Gaps = 39/472 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++     +  + IN  +    QW++ ++  VS DSRH+  G +FV + G + DGH ++
Sbjct: 1   MKMK---LAEIAKAINAQNDI-EQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   GA A + +S + + D +       P+LVV++    L         K    ++AV
Sbjct: 56  PSAFTNGAVASLWASDHEITDQTH------PLLVVNDPLAALQQLGKYYLHKINPIVVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I         Q   T T ++F  +  +           L+  S+ 
Sbjct: 110 TGSNGKTTTKDMIASILST------QFNVTKTYANFNNEIGVPV-------TLLNMESNT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +              +       T +G  HI++  T+    +AKM +    L +
Sbjct: 157 EAVVVEMGMDRFDQLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEI-THGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   +   D+   +E   R  +   R +  G Q    ++   V     +   T++ E  D
Sbjct: 216 DGTLVFNGDEPLLEE---RVKDLTQRQMRFGRQLSNNLYATSVHDEPRQLSFTVN-EWPD 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +F  P+ GE+ + NAL A  +   + I  A + + L  + +   R E+V     G +I 
Sbjct: 272 EEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEWVK-GKNGEQIL 330

Query: 360 VD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            D Y     + + +LK I      GR I V G   +       +   +A ++ D   +  
Sbjct: 331 SDVYNSNPTAAKEVLKTIAETPVDGRRIAVLGDMLELGDAAPKLHASLAEEI-DHQKIAS 389

Query: 418 DNPRSEDPEKIRAE-IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E  + ++ + I  G P          +  + I      L  +D++++
Sbjct: 390 VYLVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADLTATLTGEDIVLL 441


>gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
 gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
          Length = 455

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 152/414 (36%), Gaps = 30/414 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L    +   +  I +VSSDSR +    +FVA+ G+  DGH F+  A  
Sbjct: 1   MIKLSLTEIAEHLGGK-LLGDDFSIEQVSSDSRAVDGKTLFVALKGDNFDGHNFVGSAAE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V            +      ++VDN+++ +    + +  K     +A+TG++G
Sbjct: 60  NGARAVLVERE---------LPDAVAQIIVDNSQRAMGDIGAYVREKLAPVCVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   V  I  +     +  G                         L   +       
Sbjct: 111 KTSVKEMVATILSQQHQVLYTAG-------------NFNNEIGVPLTLLRLQAGDQFGVF 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   +      AK  +F   +  +  A+
Sbjct: 158 ELGANHAGEIDYTSSLVKPSVAMVNNVASAHLEGFGSLAGVAKAKSEIFNH-VATDGIAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I ADDA++  ++  + +      ++                 +    IS   +    + P
Sbjct: 217 INADDAFAAVMLAASQHLTQLTFAIDAAADVKATALHADKGGRYSFDISYADQVESVVLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           L G  QV NAL A+ +C+A+G+  + + + L  L  V GR   + T      +  D Y  
Sbjct: 277 LAGRHQVLNALAASSICLALGMSLSFINQGLSLLEPVKGRM--LPTRLGRVTVIDDSYNA 334

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIV 415
              S+   +  ++ I+  R +V+   G   D        +  +      D    
Sbjct: 335 NPASVGAAIDWLQEISGNRCLVLGDLGELGDNAALLHNELGAEAKAKGVDALFC 388


>gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
 gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
          Length = 442

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 141/390 (36%), Gaps = 38/390 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             +I  V +DSR ++ G +F+AI G + DGH FI +A AQGA A VV  A          
Sbjct: 17  NAEITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVVKYAVDGI------ 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-----QRSG 141
               P  VV +    L+  A+         ++A+TG++GK++    +  I         G
Sbjct: 71  --TIPQFVVPDPLHALAKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAILPVPSHATKG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   ++                    L   S        + A+  G   H +  
Sbjct: 129 NLNNHIGAPLSV--------------------LQLTSQHRYAVFELGANHPGEISHTVAI 168

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+   HI+   +      AK  +  + L     A++  DDAY+        
Sbjct: 169 VHPDVTLITNIAPAHIEGFGSIDGVARAKGEI-HQGLSTSGIAVVNDDDAYAHFWDDILV 227

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +      S+ +  +          +   Q ++ +     D    +PG   V NAL AA  
Sbjct: 228 DKKTLRFSIEHPAEVYAQDIHLDAYGCAQFSLILPNGRIDTQLQVPGLHNVRNALAAAAC 287

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C A+G+    +   L     V GR   +   ++   I   Y     S+ + L+ +     
Sbjct: 288 CHAVGVAIKDIQHGLNNFGGVKGRLMILSGKNQSTVIDDTYNANLRSVLVALEVLAE-RP 346

Query: 382 GRIIVVFGCGGD---RDQGKRPIMGKIALD 408
           G+ I VFG  G+           +G  A  
Sbjct: 347 GKKIFVFGDMGELGAWATQHHQEVGLAARR 376


>gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
 gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
          Length = 470

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 147/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 40  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 92

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 93  KDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 146

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 147 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 199

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +          V
Sbjct: 200 AITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLVQT---V 255

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 256 TTFGIGNGDVHAE--VTAKGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 311

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 312 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 370

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 371 AVLADMLELGKESLNMHAQMSEH 393


>gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax
           ferrireducens T118]
 gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodoferax ferrireducens T118]
          Length = 480

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 153/407 (37%), Gaps = 20/407 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +++      +  I  V +D+R +  G +FVA+ G   D H F+ QA AQGA A V  ++ 
Sbjct: 17  VNVTGTDGADVLIERVHTDTRTLAPGDLFVALRGEHFDAHDFLAQAKAQGAVAAVCQASD 76

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +    +       P L+V +T+  L+  A++   +    ++AVTG++GK++V   +  I 
Sbjct: 77  AGDVEAKLRAVGLPGLLVPDTKLALAQLATQWRAQFTLPLIAVTGSNGKTTVTQMIAAIL 136

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +     ++     ST  +   D  +           L       +  V +  +  G    
Sbjct: 137 RAYKPQAY----LSTQGNLNNDIGVP-------LTVLRLRRQHEIAVVELGMNHPGEIAT 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                +       N  R+H+++  T +        + + L P    A+  ADD YS    
Sbjct: 186 LAAIAQPTVALVNNAQREHLEFMATVERVAQENGSVIDAL-PAHGVAVFPADDTYSPLWA 244

Query: 258 KRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +A +           G         +        QV +S       +  P+ G   V N
Sbjct: 245 DKAGSRVVMRFGSAADGAGAAQVRCLQADWSGVAWQVAVSTPAGALQYTLPIAGLHNVKN 304

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVD-YAHTSNSLEM 371
           +L A    +A G+    +   L     V GR     +   +R   +  D Y    +S+  
Sbjct: 305 SLAAVACTLAAGVPLKHIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPDSVRA 364

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVT 416
            +  + ++   R++V+   G   DQG       G+ A  L   ++ T
Sbjct: 365 AIDVLASLPGPRLLVLGDMGEVGDQGPQFHAEAGQHARALGVESLFT 411


>gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 452

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/467 (20%), Positives = 175/467 (37%), Gaps = 40/467 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T S+F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TASNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGK---- 392

Query: 423 EDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ--DVLVVAG 466
                  +++I    G  E   ++   I     +L +Q    ++V G
Sbjct: 393 ------LSQVISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 452

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 172/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGTESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
 gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
          Length = 450

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 147/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 20  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 73  KDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 127 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +          V
Sbjct: 180 AITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLVQT---V 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 236 TTFGIGNGDVHAE--VTAEGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 292 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 351 AVLADMLELGKDSLNMHAQMSEH 373


>gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 452

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 172/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 450

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 160/416 (38%), Gaps = 29/416 (6%)

Query: 10  DFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  E+I  +     ++  E   N++S+D+R IQ   +F+A+ G   +G+ +  QAI +GA
Sbjct: 4   NLAEIIKAVDGEIIVKNNEGIFNKISTDTRKIQENNLFIALKGENFNGNDYTIQAIEKGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             I++     ++     +++   I+ V +T++ L   A     K    ++ +TG++GK+S
Sbjct: 64  SIIIID---DVKFKIEELKNRGTIIKVKDTKEALGDLARFYRKKIGVKVVGITGSTGKTS 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V            +     T  +F                         +  + + 
Sbjct: 121 TKDLVAAFLS------GKYKVFKTQGNF-------NNEIGLPLMIFELSKDYDIAVLEMG 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S+ G             G+ TN+G  HI+Y +T++     KM + +    K S  +   
Sbjct: 168 MSNFGEINKLASIALPDVGAITNIGVAHIEYLKTRENILKEKMSITDFFENKNSLIVNCE 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306
           +D     +          +  VGY   +  + K +          +  +  + + F   +
Sbjct: 228 NDM----LKTIVECDKFNLERVGYDSTYNLYSKNIKLTSENTSFDVVTDDNENYRFTLNM 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            GE  V NAL+   +    G+    + + L   +    R E +  N     I  D Y   
Sbjct: 284 VGEHNVLNALIGIQIARNFGLTFEEMEKGLGNFNATSMRLEVI--NKDKFTIINDSYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
            +S++  L+ ++  +  R I V G     GD  +     +G+ A D ADI + T +
Sbjct: 342 PDSMKAALEVLKNYSGSRKIAVLGTMGELGDYAEEAHIQVGEFAKDKADILLTTGE 397


>gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus torques L2-14]
          Length = 461

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/470 (17%), Positives = 166/470 (35%), Gaps = 36/470 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ +   +  +    +      + +R+++ V+ DSR +    +FVAI G + DGH FIPQ
Sbjct: 1   MKHMTLSEIADACCGIYYGDPAFLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA   +        D+        P + V +  + L   A          ++ +TG
Sbjct: 61  VMEAGALCSLSEQDLGDVDY--------PYIRVSSCTEALKDLAEHYRRSLDIKVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +         +     T  +F  +N +  P  ++  +         V
Sbjct: 113 SVGKTSTKEMIASVLSE------KYNVLKTEGNF--NNEIGLPLTVFNIRE-----EHEV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  +      +      TN+G  H++   T+      K  + + + PK S
Sbjct: 160 AVLEMGISHFGDMKPLAKIARPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPKGS 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                 DD       +         L+      F                       F  
Sbjct: 220 VIFNGDDDKLKSYTSRDGRTPVYFGLTSSCP--FHVENIERKGLKGTYAEFVTPTSRFHA 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
              +PG+  +YNAL    +  A+G+D+  +   +EKL  + GR   +   ++   I  D 
Sbjct: 278 HISIPGDHMIYNALAGVAVGYALGMDNEEIARGIEKLVPIAGRNNLI--EAKHYTIIDDC 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAI---- 414
           Y     S++  L  +    + ++ ++   G    D     R +    A    D+ +    
Sbjct: 336 YNANPASMKSSLDVLAYADTRKVAILGDMGELGADELAMHREVGAYAAFKNTDVLVCIGA 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ D   +     +  E    +  F  K +  + +R   ++L   D +++
Sbjct: 396 LSKDMAEAAKETVLATEKNMKVFHFDTKEDFYQNMR---QILKDNDTILI 442


>gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           CECT 5716]
          Length = 459

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/474 (20%), Positives = 185/474 (39%), Gaps = 42/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +       +W + ++  V+ DSR+++AG +FV + G + DGH 
Sbjct: 1   MKMS------LAEIAQAIQAHNQVDKWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA+A +       +D         P LVVD+  K L         K    ++
Sbjct: 54  YVAKAFENGAKATLW-----AKDHPYDPADGYPRLVVDDPLKALQQLGKYYLNKINPVVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    V  I         Q+    T ++F  +  +           L+  +
Sbjct: 109 AVTGSNGKTTTKDMVASILAT------QMNVIKTYANFNNEIGVP-------VTLLNMEA 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +     V +     G                T +G  HI++  ++    +AKM +    L
Sbjct: 156 NTEAVVVEMGMDRFGQLDLLSRLTTPDIAVVTMIGEAHIEFFGSRDKIADAKMEI-THGL 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
            ++   +   D+   +E   RA     +  + G Q    ++   V    +    T++ + 
Sbjct: 215 AEDGTFVYDGDEPLLRE---RAAKLSQQTKTFGRQLDDDLYATSVNPDVDHVSFTVN-QW 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D  F  PL GE+ V NAL A  +   + +  A + + L+ + +   R E+V   + G R
Sbjct: 271 PDEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWV-AGANGER 329

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD 411
           I  D Y     +++ +L  + TI  +G+ + V G   +  +    +       I     D
Sbjct: 330 ILSDVYNSNPTAVKEVLATLATIPVAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLD 389

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV 464
              +      +     ++A    G   + +   R  A+  A+   L   DV+++
Sbjct: 390 EVYLIGGEMGALKDALLKAGYPAGQLHYYQAAQRK-ALTDALQASLTTGDVVLL 442


>gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
 gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
          Length = 483

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 168/488 (34%), Gaps = 51/488 (10%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I Q    P  W   +I  V +DSR +  G +FVA+ G + DGH F+   + +GA A +V
Sbjct: 1   MIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALV 60

Query: 74  S---------------------SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           S                          Q  +        ++ VD+    L   A      
Sbjct: 61  SPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQM 120

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++ +TG+ GK+S    V  +C R            T+ S     R         A 
Sbjct: 121 FTPTVIGITGSVGKTSTKEVVAAVCSR---------RLRTLKS----QRSFNSEVTLPAT 167

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L   +   V  + +   + G  +      +   G  TN+G  H++   + +A  NAK  
Sbjct: 168 LLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKAE 227

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQ 290
           L E L P +   I+ ADD     V   A     RVL+ GY        L  V       +
Sbjct: 228 LPESL-PADGWCILNADDH---RVAAMASRTAARVLTYGYAPNADVRLLDVVSHGLYGIE 283

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +T+  EG+      PL G    Y AL A    + +G+D   + E L +      +     
Sbjct: 284 LTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLRE---PGEQLRLRI 340

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD---RDQGKRPIMGKIA 406
              + G   +D  + +  L  I        T GR I V G   +           +G  A
Sbjct: 341 VPGQHGTTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLGEMLELGAASVEGHQQVGAAA 400

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +AD+ +       +       A +       +   N   AI      +   D L++  
Sbjct: 401 ATMADVLVAVGRQAHTMAEAARSAGMPA--EQILVCDNNEAAINLLNRYIQPGDHLLI-- 456

Query: 467 KGHETVHI 474
           KG   V +
Sbjct: 457 KGSRGVQM 464


>gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 471

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/471 (19%), Positives = 159/471 (33%), Gaps = 39/471 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +    +   V  DSR    G +FVA VG + DGH +   
Sbjct: 1   MIALSLAEIAEVVGGQTHDIPDPSVMVTGPVVRDSREAVPGSLFVAFVGERADGHDYARA 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A++ S                P +VVD+ ++ L   A  +  +    ++A+TG
Sbjct: 61  VVETGAVAVLGSRPV-----------GVPAIVVDDVQRALGALARHVVERLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +    + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLRTKAPTVFTPGSLNNEIGLPLTALSATAETRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--K 240
             + + A   G  ++  +      G   N+G  HI     ++    AK  L E L P  +
Sbjct: 158 -VLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHIGEFGGREQIAQAKGELVESLPPAEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ-QVTISVEGK 298
              A++ ADD Y K +  R      RVL  G      +  + V      Q   ++     
Sbjct: 217 GGVAVLNADDPYVKAMAAR---TTARVLLFGESDEADVRAENVTLTAAGQPSFSLHTPSG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  I
Sbjct: 274 CSDVTMRLYGEHHVSNALAAAAVAHELGMSAKEIATALSEAGSLSRWRMEVTERPDGVTI 333

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             D Y     S++  L+ +  +  GR    V G   +           +      + +  
Sbjct: 334 VNDAYNANPESMKAALRALAAMGRGRRTWAVLGRMAELGDEALAEHDAVGRLAVRLNVGK 393

Query: 417 DDNPRSEDPEKI-RAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +   +       G      +   +   A+      L   DV++V
Sbjct: 394 LVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 444


>gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 453

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 162/458 (35%), Gaps = 42/458 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL+  L++         I+ V +DSR ++ G +FV   G + DGH F   A   GA  I+
Sbjct: 8   ELLAGLTL----AEPVSIHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYII 63

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
            +           + ++  + VV ++   +   AS         I+ VTG+ GK++   F
Sbjct: 64  ANHPVD------GVPADRTV-VVPDSALAMVRMASNYRMLFSPRIIGVTGSVGKTTTKEF 116

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              +    G +    G                 + I +   L  L S     V      H
Sbjct: 117 CYAVLSAFGNTLKTEG--------------NQNNEIGVPNTLFRLESATEYAVVEMGMDH 162

Query: 193 GLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +  RL   ++  AG  T +G  H++   T++    AKM +   L P  +P ++ AD+ 
Sbjct: 163 AGEIERLTRCVRPSAGIITMIGVSHLENLGTRENILKAKMEICAGL-PDGAPLVLNADND 221

Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGE 309
                         R +  G  Q   +  + +         T+   E   F    P  G 
Sbjct: 222 LLPT---AQVPGRLRAVWFGIEQEADVRAENIQTGAQGTTFTLVDREYGRFPVSIPTAGL 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             VY+AL A      +G+D A   + L +      R   V     G  +  D Y  + +S
Sbjct: 279 HTVYDALSAYAAATRLGLDPANCAKALSRYQTTGMRQHIV--ERGGVTVIEDCYNASPDS 336

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN--PRSEDPE 426
           ++  +  ++ + + R I + G   +               +A+  + T     PRS    
Sbjct: 337 MKAAISVLKALPNKRKIALLGDMLELGDASEEGHRHTGEWVAEAGVDTLIAYGPRS---- 392

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLV 463
            + AE             + + +   ++  +   D L+
Sbjct: 393 AVMAEAAQARGVTTVHCQKAQEVLQCLQQFVQPGDALL 430


>gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
 gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB056]
 gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB058]
 gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB059]
 gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
          Length = 466

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 145/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q +A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+   AI+   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQ-GVAIVPQQDDFTAEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +++S G  G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 H--QIMSFG-AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKTPHLF-IDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 465

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/490 (18%), Positives = 169/490 (34%), Gaps = 40/490 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E+ + +  + +       +  +S+DSR IQ G  FVA+ G + DGH FI  A+
Sbjct: 1   MLTATVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPGMAFVALKGERFDGHDFIGAAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGT 123
           +    A               +R    ++ VD+T   L   A+    K     ++ VTG+
Sbjct: 61  SG--GAAAAIGTSFPGHQVVGLRPGQALIQVDDTLLALQKLAAYHRQKVLKGPLIGVTGS 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++  + +  +          +    T  +F                 L         
Sbjct: 119 SGKTTTKNLIAAVLS------PVLKVLKTPGNF-------NNEIGLPMTLLRLAPWHQAA 165

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G         +   G  TN+G  H+    +      AK  L   L P E  
Sbjct: 166 VVEMAMRGKGEIASLAAIARPTIGVITNIGTTHLGLLGSIANIAAAKGELLAAL-PAEGL 224

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFD 301
           A++  D+ + + +   A    CRV+    +G+     +            T    GK+  
Sbjct: 225 AVLNGDNEWCRRL---AATCPCRVVFFSTRGQGEIYARDIGDRGLEGTFFTAVFPGKEVR 281

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG   V +AL A  +  ++G++   +   L          + +     G  ++ D
Sbjct: 282 VQLPVPGRHNVEDALAALAVGFSLGVEPETMARSLAD-WPAEDLRQDLRPGPGGSLVFND 340

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            Y     S+E  L+ +  +  GR + V G   +    +  +  ++    A   +      
Sbjct: 341 AYNANPESMEAALQALGAL-PGRRVAVLGAMLELGPAEVELHRRVGRFAAARGLY----- 394

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLN---KQDVLVVAGK---GHET 471
           R     ++  EI  G        +++ A      A   L      DV++  G    G E 
Sbjct: 395 RLITVGELAGEIAAGALEAGMPADQVFACLTHEEAAGHLRGLGHGDVVLFKGSRLTGMEK 454

Query: 472 VHIVTNGEKK 481
           V  +  G + 
Sbjct: 455 VLAIWEGSEH 464


>gi|158834106|gb|ABW81858.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 145/294 (49%), Gaps = 10/294 (3%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TT S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH
Sbjct: 7   ENTTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYH 66

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKF 276
                Y  AK +LF     KE    I ADD   +  + +  +A        +   ++G++
Sbjct: 67  GDMARYKAAKWQLFSTHHAKEKI--INADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           +  K +        +       +   +  L G F V N L+A    +A+      ++  +
Sbjct: 125 LETKNINYHAQGITLRFDSSWGEGRLVSRLLGAFNVSNLLIALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDR-PTVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIE 447
           GKR +MG IA   AD  +VTDD+PR+EDP  I A+I+ G   I   +   NR E
Sbjct: 244 GKRALMGGIAEQWADHLVVTDDSPRTEDPGVIVADILSGLVEIRHAVVIHNRAE 297


>gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 452

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 170/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +   + V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTFDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVP-------ITLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
          Length = 457

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 162/453 (35%), Gaps = 39/453 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            +E +++ V  DSR  +   +F A+ G + +GH F   A   GA A+VV           
Sbjct: 21  GKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGACAVVVKREIE------ 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++   + V++T K L   A     +     +A+TG++GK++       +  +     
Sbjct: 75  --GADCFQIKVEDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMTASVLSK----- 127

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIK 203
            +     TI +F         S   +   L  L       V     +H G  +   + ++
Sbjct: 128 -KYKTMKTIGNF--------NSTTGVPLTLFNLEQGDEIAVVEMGMNHKGEIEKISELVE 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+G  HI+   +++  F AK  + + L  K    ++  DD + K+      N 
Sbjct: 179 PDLAMITNVGVTHIENLGSKENIFKAKTEITKGL-KKGGTLLVNGDDEFFKD----YTND 233

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V+ VG          +       +  +   GK++ F   +P ++ VYNAL A     
Sbjct: 234 EFNVVKVGINHGDFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYTGF 293

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
             G++   + E L+       R +    N  G  +  D Y     +L+  L  +  I   
Sbjct: 294 HFGLNYEQIKEGLDDFMPTGNRMKIEEVN--GITLIDDTYNSNPEALKEALGLLNRIGGN 351

Query: 383 RIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
              V     +   G   ++         A +  ++ +   D             +  G  
Sbjct: 352 NRKVAVLGDMLELGEKSEEEHEACGKAAAENGVELLLACGDYAMHYIKGAGENGMDPGKA 411

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
            +  + N    +    + L + D ++V A +G 
Sbjct: 412 LYFFEKN--YLVEEVFDFLKEGDFVLVKASRGM 442


>gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
 gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri]
 gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
          Length = 459

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/472 (20%), Positives = 186/472 (39%), Gaps = 39/472 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++     +  + IN  +    QW++ ++  VS DSRH+  G +FV + G + DGH ++
Sbjct: 1   MKMK---LAEIAKAINAQNDI-EQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   GA A + +S + + D +       P+LVV +    L         K    ++AV
Sbjct: 56  PSAFTNGAVASLWASDHEITDQTH------PLLVVSDPLAALQQLGKYYLHKINPIVVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I                ++    +       P+ L   L+  S+ 
Sbjct: 110 TGSNGKTTTKDMIASILS----------TQFNVAKTYANFNNEIGVPVTL---LNMESNT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G        +       T +G  HI++  T+    +AKM +    L +
Sbjct: 157 EAVVVEMGMDRFGQLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEI-THGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   +   D+   +E   R  +   R +  G Q    ++   V     +   T++ E  D
Sbjct: 216 DGTLVFNGDEPLLEE---RVKDLAQRQMRFGRQLSNNLYATSVHDEPRQLSFTVN-EWPD 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +F  P+ GE+ + NAL A  +   + I  A + + L  + +   R E+V     G +I 
Sbjct: 272 EEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEWVK-GKNGEQIL 330

Query: 360 VD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            D Y     + + +LK I     +GR I V G   +       +   +A ++ D   +  
Sbjct: 331 SDVYNSNPTAAKEVLKTIAETPVAGRRIAVLGDMLELGDAAAKLHASLAEEI-DHQKIAS 389

Query: 418 DNPRSEDPEKIRAE-IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E  + ++ + I  G P          +  + I      L   D++++
Sbjct: 390 VYLVGEQMKNLKDKLIQEGYPAEDIYHYAASDLQQLIADLTTTLTGDDIVLL 441


>gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
 gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
          Length = 440

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 144/385 (37%), Gaps = 26/385 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I EV+ D+R + AG +FVA+ G + DGH F             V++       S  +
Sbjct: 8   NVDITEVTIDTRQVTAGCLFVALKGERFDGHDFAED---------AVAAGAGALLVSKRL 58

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV   V  I ++ G   + 
Sbjct: 59  LVGAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLY- 117

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                T  +F  D  +           L          + + A+  G   +  D  +  +
Sbjct: 118 -----TAGNFNNDIGVPL-------TLLRLTPEHDFAVIELGANHVGEIAYTTDLSRPES 165

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               NL   H++   +      AK  +F  L P    AII AD        +  HN    
Sbjct: 166 ALVNNLSAAHLEGFGSLAGVAQAKGEIFAGL-PANGTAIINADSHDWPHWQETLHNKRVW 224

Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             S         +   V          +       D   PLPG   + NAL AA L +++
Sbjct: 225 RFSPHAAEDIDFYASDVRITPQTTYFILHSPFGIVDIELPLPGRHNIANALAAAALAMSV 284

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G D A V + L +L  VPGR   +   +    +   Y     S+    + +  +   R++
Sbjct: 285 GADLAAVRQGLTQLQAVPGRLFPIQLAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVM 344

Query: 386 VVFGCGGDRDQ--GKRPIMGKIALD 408
           VV       D        +G+ A  
Sbjct: 345 VVGDMAELGDTAVDCHRQVGEAAKQ 369


>gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 455

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 163/412 (39%), Gaps = 36/412 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK+Q        E+   L I    Q+ +  I  VS DSR ++ G +FV ++ +  DGH F
Sbjct: 1   MKMQ------LSEVARALGIESEDQYDQITITSVSFDSRSLEQGALFVPLIASN-DGHEF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  A   GA A +    +  +          P+L+VD+T + L         K    ++A
Sbjct: 54  VEAAKQNGACAALWQKDHENR------PQGIPLLIVDDTLEALQKIGKYYLQKINPKVVA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    +  +                ++    +       P+ +   LS   +
Sbjct: 108 ITGSNGKTTTKDMIAAVLS----------TQFNVAKTHDNFNNHIGVPMTV---LSMEPN 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  V +     G   H +  +       T +G  HI++ +T+    +AKM +    L 
Sbjct: 155 TEILVVEIGMDHFGELDHLVHLLDPDVAVITMIGEAHIEFFKTRDRIADAKMEI-THALK 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGK 298
           ++   +   D+     +++RA        + G  G  + L+    + + ++ +  V +  
Sbjct: 214 EDGLLVYNGDEPL---LIERAEKLDFETKTFG-TGANVDLQAQNIVSDAEKTSFRVKQWP 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + +F  P+ G + V NAL A  +     ID   +++ LE   +   R E+V   S G  I
Sbjct: 270 ELNFTIPMIGAYNVKNALAALCVGSEFQIDPRSMVKALEHFDLTRNRTEWVKA-SNGADI 328

Query: 359 YVD-YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             D Y     +   +L   +   T+GR   V G   +  +    +   +A  
Sbjct: 329 LSDVYNSNPTACAEVLTAFQNAETTGRRYAVLGDMLELGEQGPKMHAGLADK 380


>gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 452

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 172/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 452

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 93/466 (19%), Positives = 172/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
 gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
          Length = 468

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 101/464 (21%), Positives = 174/464 (37%), Gaps = 34/464 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+I       +    + ++ VS+DSR + AG +FVA+ G++ DGH FI  A+A+G   
Sbjct: 4   IDEIIQATGGTLIGSGGKMVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAKGVRT 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V++        A    N   + V  T + L   A+    K    ++ +TG++GK++  
Sbjct: 64  FLVAADSLAARAPA---ENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTTK 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I  ++G      G  + +              I L   L  ++ +    V     
Sbjct: 121 EMLATILGQTGPGLKTSGNLNNL--------------IGLPLMLLRMTGRDRWAVLEMGM 166

Query: 191 SHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S   +  RL  I     G  TN    H+    + +A   AK  LF + L     A+  AD
Sbjct: 167 SEPGEIDRLAEIAEPGVGIITNAFTAHLASMGSVEAVAKAKGELF-QRLKTGGVAVYNAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPG 308
           D     +      AG   LS G +G  +  + +  +     + T+ +   +        G
Sbjct: 226 DPLISRL---PTAAGVSRLSFGLRGAEVSSEGIKTLGLEGVRFTLRLPDGEIPVKMRAFG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTS 366
           +  +YNAL AA    AIG+D   +   LE+      RF        G  + +D  Y    
Sbjct: 283 QHNIYNALAAAAAAHAIGLDHQTIRAGLEEFTPYDKRF---HVEQVGDIVLIDDSYNANP 339

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
            S+   L  ++ I    R I V G   +   G       +G +A    +   V  +   +
Sbjct: 340 ASIAAALVTLKDIRQQNRAIAVLGDMLELGSGAPAAHREVGLLAATCVERLYVMGEYAET 399

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +   +  G       G+  E +      + K D ++V G
Sbjct: 400 VAAGAVDGGM--GADHIYVAGSHGEIVEDLRRKVTKGDNILVKG 441


>gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
 gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
          Length = 452

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 145/409 (35%), Gaps = 28/409 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   ++   L I     +   I  VS ++R ++ G +F+   G   +GH ++  AI  G
Sbjct: 2   KKQIEQVAKWLDIKT-NLKGIDITGVSINTRTLKPGDLFIPFRGENVNGHKYVRSAIELG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +                + P+L V++    L   A     +    ++ +TG++GK+
Sbjct: 61  ASASLWQRD------EPGAPEDLPLLFVEDCEVALQEMARAYRDELSAMVIGITGSNGKT 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    V  + +             T  +F                 LS      V  + +
Sbjct: 115 STKDLVASVLK------PYFKVQKTPGNFNNQLG-------LPLTILSLEEDTKVAVLEM 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +   +  +      TN+G  H+    +++A   AK  +   L  +       
Sbjct: 162 GMSGRGQIEFLSELARPDYAIITNIGEAHLQDLGSREAIAEAKFEITAGL-QQHGKLFYD 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            D+   +  M+    A  + +S G+       +  + A  +     +S    D  F  P+
Sbjct: 221 GDEPLLQPFME----AFPQGVSFGFDDNNELTVTDIKATESGSSFMVS-GIIDAAFTIPV 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE QV N L A  + +  G+    + + L+   +   R + +  ++    I   Y    
Sbjct: 276 LGEHQVKNTLAAILVALEAGLSEEQIRKSLKDAALTDMRMQMIQADNGAIFINDAYNAAP 335

Query: 367 NSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +S+   L  IR  T      VV G   +    ++     ++  ++D  +
Sbjct: 336 SSMNAALNFIRETTMKDKKWVVLGDMLELGDDEQSYHEALSKCISDNLV 384


>gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
 gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 459

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/472 (20%), Positives = 187/472 (39%), Gaps = 39/472 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++     +  + IN  +    QW++ ++  VS DSRH+  G +FV + G + DGH ++
Sbjct: 1   MKMK---LAEIAKAINAQNDI-EQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   GA A + +S + + D +       P+LVV +    L         K    ++AV
Sbjct: 56  PSAFTNGAVASLWASDHEITDQTH------PLLVVSDPLAALQQLGKYYLHKINPIVVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I                ++    +       P+ L   L+  S+ 
Sbjct: 110 TGSNGKTTTKDMIASILS----------TQFNVAKTYANFNNEIGVPVTL---LNMESNT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G        +       T +G  HI++  T+    +AKM +    L +
Sbjct: 157 EAVVVEMGMDRFGQLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEI-THGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   +   D+   +E   R  +   R +  G Q    ++   V     +   T++ E  D
Sbjct: 216 DGTLVFNGDEPLLEE---RVKDLAQRQMRFGRQLSNNLYATSVHDEPRQLSFTVN-EWPD 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +F  P+ GE+ + NAL A  +   + I  A + + L  + +   R E+V     G +I 
Sbjct: 272 EEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEWVK-GKNGEQIL 330

Query: 360 VD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            D Y     + + +LK I     +GR I V G   +       +   +A ++ D   +  
Sbjct: 331 SDVYNSNPTAAKEVLKTIAETPVAGRRIAVLGDMLELGDAAAKLHASLAEEI-DHQKIAS 389

Query: 418 DNPRSEDPEKIRAE-IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E  + ++ + I  G P          +  + I      L  +D++++
Sbjct: 390 VYLVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADLTATLTGEDIVLL 441


>gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
 gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
          Length = 474

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 169/462 (36%), Gaps = 35/462 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  L         R  + +S D+R +  G +F AI G   DGH F+  A  +GA   VV
Sbjct: 12  LVGALRARVSGGLPRDASGISIDTRTLAPGDLFFAIKGEARDGHDFVAAAFERGAAGAVV 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             A++       +    P+ VV + ++ L    +R   +    ++ VTG+ GK+S     
Sbjct: 72  DEAHA-----GALAGRAPLYVVKDVQESLERLGARARERSAAYVVGVTGSVGKTSTKEMA 126

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH- 192
             +  R G +                +  +  +   +  +L+ + +     V     +H 
Sbjct: 127 AAVLSRFGAAHA--------------SAASYNNQWGVPLSLARMPAATRFGVFEIGMNHA 172

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G        ++      T +   H+++    +A  +AK  +F  ++     AI+  DD  
Sbjct: 173 GEIAALAPLVEPHVALVTRVAPVHLEHFACLEAIADAKSEIFSGVV-DGGVAILNRDDET 231

Query: 253 SKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            + +++  A +    V   G        + +     +  V   + G+   +    PG   
Sbjct: 232 FERMLEAAAASRAAHVFGFGVSEGAQ-ARLLSYDPRENSVEADIFGRRLRYRIGAPGRHF 290

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             N+L    +   + +D A     L +       GR E +   +    +  + Y     S
Sbjct: 291 ALNSLAVLTIAHVLDLDLAQASAALAEFAPPKGRGRREQLPAGAVPLTLIDESYNANPTS 350

Query: 369 LEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +   L+ +      GR + V G   +       +  ++A DL    +   D   +  P  
Sbjct: 351 MRAALELLGAERPIGRRVAVLGDMLELGPSAAELHAELASDLEAAGV---DLLFTAGP-- 405

Query: 428 IRAEIIHGIPGFIEKGNRIEA--IRTAI-EMLNKQDVLVVAG 466
           + A + +  P  +   +R  A  +  A+ + L   DV+++ G
Sbjct: 406 LMARLYYAAPERMRGAHRATARELEEAVLDSLGAGDVVMIKG 447


>gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
 gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
          Length = 455

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 154/397 (38%), Gaps = 31/397 (7%)

Query: 14  LINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+  L+I   +   E+    VS+D+R I  G +FV + G + +GH ++  AI  GA+A +
Sbjct: 6   LLESLTISTRLNETEQSFTAVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIKSGAQAAL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                  Q   A +  +  + VV +T   L   AS    K    ++ +TG++GK++    
Sbjct: 66  WEEG---QPVPAALPDDFQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNGKTTTKDI 122

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +    G +    G  +              +  YL                +  S +
Sbjct: 123 LASLLSLEGETYKTQGNYNNHIGLPLTILAMPSTCKYLILE-------------MGMSGY 169

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +   +  K      TN+G  H++   ++     AKM + E L P      I +D+  
Sbjct: 170 GEIERLSEIAKPDLAIVTNIGESHMEQLGSRAGIAKAKMEIKEGLSP-AGFLFIDSDEPL 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                + +      ++ VG+    I ++ V A  +  Q  I    +   F   L G+  V
Sbjct: 229 LDGWKQSS------IMRVGFNHADILVENVAATVDGYQFDI----EGHHFELSLLGKHNV 278

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
            NA     +    G+ ++ +   L ++ +   R E + T ++G  I  D Y  +  S+  
Sbjct: 279 KNAAYCIAVARKFGLVTSKIQTGLRQISLTSMRLEKL-TGNKGELIVNDAYNASPTSMIA 337

Query: 372 ILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIAL 407
            +  ++ I S    +VV G   +    +  +   +A 
Sbjct: 338 AIDALKAIPSYEKRVVVLGDMFELGTEEEALHKSVAQ 374


>gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Pseudomonas entomophila L48]
 gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Pseudomonas
           entomophila L48]
          Length = 455

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/469 (19%), Positives = 155/469 (33%), Gaps = 44/469 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L      +L   L    +   +     VS DSR + AG +FVA+ G + DGH ++    A
Sbjct: 2   LKPMTLSQLTTALGARHV-GADASFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A +V    +          + P LVV ++R  L    +       + ++A+TG+SG
Sbjct: 61  KGAVAALVEREIA--------DVDLPQLVVADSRLALGQLGALNRAAFDKPVVAITGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I +  G      G  +                      L          +
Sbjct: 113 KTTVKEMLAAILRTRGPVHATRGNLNNDLGAPLT-------------LLEIAPEHSAAVI 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + AS  G  ++ +   K       N G  H+      +    AK  + E L  +   AI
Sbjct: 160 ELGASRMGEIRYTVGLTKPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGL-GEGGTAI 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           +   D       KRA        ++       H   +          T+           
Sbjct: 219 LNLADKAFDIWRKRAGTHRILSFALDNPQADFHASDIGRDARGCPSFTLHGPDGSVPVQL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
            L G   V NAL AA    A+G+  + +   L  +  V GR         G R+  D Y 
Sbjct: 279 NLLGIHNVSNALAAAAAAHAVGLSLSGIAAGLNAVQPVKGR-TVAQVAPSGVRVIDDSYN 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS- 422
               S+   +  +   +   ++V+   G          +G+ A +         D  R  
Sbjct: 338 ANPTSMCAAIDILAGFSGRTVLVLGDIG---------ELGQWAEEGHRQV---GDYARGK 385

Query: 423 -EDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAG 466
            +    +   + H +  F EKG     + E I            +++ G
Sbjct: 386 VDALYAVGTNMAHAVKAFGEKGRHFATQAELIDAVRTEAASDTTILIKG 434


>gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
 gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
          Length = 453

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 92/459 (20%), Positives = 169/459 (36%), Gaps = 38/459 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L+   +   +  +++V++D+R + AG +F+A+ G + D H F+ +A+A GA A++VS
Sbjct: 9   LADLTGGKLFGGDLSVDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEAMAAGASALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              ++      +          +TR  L   A  +  +    ++A+TG+SGK+SV     
Sbjct: 69  KHVTVAVPQVVV---------ADTRIALGQLAGWVRQQSTARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G  +                      L   +S     V + A+  G 
Sbjct: 120 AILRECGETLYTAGNLNN-------------DIGVPLTLLRLNASHQYAVVELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  +  +       NL   H++   +      AK  +F+ L P    AI+ AD     
Sbjct: 167 IAYTTEITRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFQGL-PINGTAILNADSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                 H+      S   Q         V    +     +           PLPG   + 
Sbjct: 226 HWQHSLHSKTVWRFSSAPQADSDFSATDVKVTSSGTHFVMITPAGSIAIQLPLPGRHNIA 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA L +++    + + + L  L  VPGR   V        +   Y     S+    
Sbjct: 286 NALAAAALALSVDAPLSAIQKGLSHLQAVPGRLYPVALAENKLLLDDSYNANVGSMTAAA 345

Query: 374 KNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRA 430
           + +  +   R++VV   G   D  +     +G+ A L   D  +               +
Sbjct: 346 QVLSEMPGYRVMVVGDMGELGDEAEECHREVGEAARLAGIDKVLSVGK----------MS 395

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            +I    G  E      A+   ++ +L + DV+ +  KG
Sbjct: 396 HLISEASGAGEHLQDKAAVTARLQTLLAEHDVITILVKG 434


>gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
 gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
          Length = 444

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 87/423 (20%), Positives = 163/423 (38%), Gaps = 39/423 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L  +    L+   + +           +S DSR I+   +F+A+ G + DGH ++
Sbjct: 1   MKLSTLASRLKGTLLGADAHY---------KGISVDSRSIKPHELFIALRGKQYDGHHYV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A   GA A VV            I ++ P+++V++TRK L   A     +    I+ +
Sbjct: 52  GEAQQHGAAAAVVEE---------VIETDLPLVLVEDTRKALGELAKHHRRQFSIPIIGL 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    ++ I    G                 + +    +       L   +  
Sbjct: 103 TGSCGKTTTREMIRSILAEMGPVLA-------------NFKNFNNAIGLPLTLLHLTAEH 149

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     +      TN+G  H+    +      AK  +F  L  K
Sbjct: 150 RYAVIEMGANHAGEIDYLTHITQPDIALITNIGPAHLQGFGSILRVAEAKAEIFSGLAQK 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
              AI+ A D + ++++++A     RV     Q    + +++      +    +   G++
Sbjct: 210 -GVAILNAADNH-RDILEKASAQYRRVNFGLTQNCDFYARQIQLDKTGRPTFLLVSSGEE 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G+  V NAL AA +   +G++ +++   LEK+  + GR     T +    I 
Sbjct: 268 IIIRLNLSGQHHVMNALAAAAVARQVGVEFSVIQSGLEKMQPLSGRVINRTTKTGATLID 327

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIA-LDLADIAIV 415
             Y    +S+   LK +     G  I+V G   +  +        MG++A     D    
Sbjct: 328 DSYNANPSSVAAALK-LLAHYKGLRILVLGDMSELGKSAGAYHRQMGELAKALTIDKVYT 386

Query: 416 TDD 418
             D
Sbjct: 387 CGD 389


>gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
 gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
          Length = 452

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/466 (20%), Positives = 181/466 (38%), Gaps = 46/466 (9%)

Query: 6   LIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  + P ++ N L         + INE+++D+R+I    IF+A+ G+K DGHLF  +AI
Sbjct: 1   MILSEIPNILSNSLKEISQPLSNKLINEINTDTRNITENDIFLALKGDKFDGHLFAEKAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A++++        S       P ++V +T       A+    K    I+ +TG+ 
Sbjct: 61  DKGAIALILNHKI-----SVNSTKKIPQIIVKDTLIAYQEIANWWRNKVKIPIIGITGSV 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +           G    +     +       P  L   L+  +S     
Sbjct: 116 GKTTTKELISAVL----------GVYGKVHKTQANYNNEIGVPKTL---LAITTSDDYAV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +   + G             G  TN+G  HI    +++A   AK  L  E +P +S A
Sbjct: 163 IEMAMRARGEIALLSQIACPTIGIITNVGTAHIGRLGSREAIAEAKCELLAE-MPTDSIA 221

Query: 245 IIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+  DD   + +M+ A      + ++ G +G  I  K +          + V+G DF   
Sbjct: 222 ILNHDD---QRLMETAAKVWQGKTITYGLEGGDITGKVLENQ------ILRVKGMDFP-- 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG     N L A  +   + +D   +++ +  +++  GR +     +    +   Y 
Sbjct: 271 LPLPGRHNALNYLAALAVTQQLNLDWHPLIQGV-TVNLPQGRSQQYSLENDIILLDETYN 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALD-LADIAIVTDDN 419
               S++  L+ ++     R + V G      D        +G+ A     D   +  D+
Sbjct: 330 AGLESMKAALQLLKDTPGKRHLAVLGTMKELGDASAQLHQEVGETAETLGIDGLYILVDD 389

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
           P           I  G+     +      + I+   E++   D ++
Sbjct: 390 PE-------AQAIAQGVKTVETECFPTHEQLIQRLTEIIKPGDRIL 428


>gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
 gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
          Length = 457

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/436 (20%), Positives = 163/436 (37%), Gaps = 31/436 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + D+  +    +++   I         IN VS+D+R ++ G +FVAIVG++ D H F  Q
Sbjct: 1   MIDVSLEQICSVVSGELIEAGNSNNNVINAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+   A A++V     L         N   +VV++T+  L   ++ ++ +     +A+TG
Sbjct: 61  AVEANASALLVERKLDL---------NITQVVVEDTKLALGELSAWIHKQCDVPTMAITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++V   V  I Q+ G   F      T  +F  D  +           L   SS   
Sbjct: 112 SCGKTTVKEMVASILQQRGKVLF------TAGNFNNDIGVP-------LTLLRSESSDDY 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+  G   +    +K       N+   H++   +      AK  +F+ L     
Sbjct: 159 AVIELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGL-AAGD 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD 301
            AI+  +        +   +      S G +      + +      +    +        
Sbjct: 218 TAIVNLESNGGDFWNEVLADKTVLTFSEGSREADYFAENIEINDQGEACFDMQTPQGATA 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+  V NAL AA L I  G     +   L  L  V GR E    +     I   
Sbjct: 278 VELGIIGQHNVTNALAAAALSIQFGATLDEIKSGLANLISVKGRVEVQQLSQNIKLIDDS 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDN 419
           Y  +  +++   K + +    R +++       D+       +G+ A   A   ++T   
Sbjct: 338 YNASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT--- 394

Query: 420 PRSEDPEKIRAEIIHG 435
               D  K+ +E+ +G
Sbjct: 395 --YGDDTKVISEVCNG 408


>gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Herminiimonas arsenicoxydans]
          Length = 455

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 154/386 (39%), Gaps = 23/386 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +   + VS+DSRH+  G +FVA+ G + D H F+PQ   +   A+V              
Sbjct: 20  DAAFDGVSTDSRHVAVGNLFVALRGERFDAHAFLPQVAERKVAAVVAEK--------IPA 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N P L+V +TR  L   AS    +    ++ VTG++GK++V   +  I   +      
Sbjct: 72  GLNVPALIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAA---FGP 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +T  +F  D  +        A   + +   G+ H    A    + Q          
Sbjct: 129 DNYLATRGNFNNDIGVPLTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQ-------PTV 181

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N  R+H ++ ++ +A       +   L P +  A+  ADDA++   + R++ A  +
Sbjct: 182 GLVNNAQREHQEFMESVEAVAQENGAVLASL-PADGVAVFPADDAFTP--LWRSYAAQRK 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            L+ G+           A      ++++   + F       G   V NAL A    +AIG
Sbjct: 239 TLTFGFSADADVRCTYAANVFGNDMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           I    ++  L+    V GR +     + G  +  D Y    +S+   +  +  + S RI+
Sbjct: 299 IAPEAIVRGLQAFAPVSGRLQR-KLAASGALVIDDTYNANPDSVRAAIDVLAQMASPRIL 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLAD 411
           V+   G   + G++      A   A+
Sbjct: 358 VLGDMGEVGNDGRQYHEEIGAYARAN 383


>gi|240147081|ref|ZP_04745682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
 gi|257200751|gb|EEU99035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
          Length = 401

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 98/406 (24%), Positives = 167/406 (41%), Gaps = 37/406 (9%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+   S   +Q   +  I ++   S  ++ G +FV I G   DGH +I  A+  GA 
Sbjct: 3   LDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAF 62

Query: 70  AIVVSSA----------YSLQDFSATIRS-----NTPILVVDNTRKFLSLFASRLYGKHP 114
           A+VV  +             +     +          ++ V +TR+ L+  ++  Y    
Sbjct: 63  AVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDYPA 122

Query: 115 ENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLA 171
           + +  + +TGT GK++ A     I + +G  +  +G   T +         TTP    L 
Sbjct: 123 KKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSDLQ 182

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNA 229
           + L+ + S G     +E SS G+   R++GI    G F N+  DHI    H +   Y   
Sbjct: 183 RELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGPGEHASFAEYLYC 242

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---------GYQGKFIHLK 280
           K RL  +        I+  DD  +++++   H       SV         G +   +  +
Sbjct: 243 KSRLLRQC----QAGIVNRDDRNTEKIL-FGHTCDIETFSVLGENGVDAPGQKADIVAER 297

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              ++   +  +        +FL  +PG F V NAL A  +     I   +V + L++  
Sbjct: 298 ITFSMKEGRLYSHFFTDGKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDALQR-Q 356

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            VPGR E V  + +     VDYAH   SL  +L  +R    GR++V
Sbjct: 357 TVPGRCENVRISDK-FVFLVDYAHNEMSLRNLLGTLRGFDPGRLVV 401


>gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 450

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 147/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 20  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 73  KDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 127 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+P +   ++ +D+     +          V
Sbjct: 180 AITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPSDEPLLTPLTATLVQT---V 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 236 TTFGIGNGDVHAE--VTAEGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 292 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 351 AVLADMLELGKDSLNMHAQMSEH 373


>gi|289758280|ref|ZP_06517658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
 gi|289713844|gb|EFD77856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
          Length = 417

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 158/366 (43%), Gaps = 10/366 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 40  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 97  GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 156

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 157 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 216

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M     
Sbjct: 217 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA 276

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V +      +            QQ T I   G        LPG + V N LVA  +
Sbjct: 277 DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAI 336

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TIT 380
              +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L  +    T
Sbjct: 337 LDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVLTTLSAPRT 394

Query: 381 SGRIIV 386
           +G    
Sbjct: 395 AGWRWC 400


>gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
 gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
          Length = 466

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 145/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V          
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQP------- 83

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
             I +N   LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 84  --IDANIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGANHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+   AI+   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQ-GVAIVPQQDDFTTEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               ++S G  G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 HH--IMSFG-TGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLDDIVKGLEQAQGAKGRLNFIQKAPHLF-IDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAQLPLDHII 398


>gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
 gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
          Length = 463

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 166/446 (37%), Gaps = 41/446 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV  AY             P+
Sbjct: 26  ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVDEAY------VPTADCGPL 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A+         ++A+TG++GK++    +     + G   +     + 
Sbjct: 80  VAVKDTLQALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +          T    ++              + +  +S G         +      TN+
Sbjct: 140 LIGMPLYAANLTEDAEFV-------------VLEMGMNSPGEVDALSRIARPDVAVITNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   R++S G 
Sbjct: 187 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFGV 245

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    ++          +T+   G++             Y+  + A +  A  ID    
Sbjct: 246 -GAGADVQIFRREEPSNSITLRCFGEELQCNLKSGARHLAYSVAITAAVGRAFSIDLTQA 304

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRI----- 384
              +E+   + GR +   T  +G  I      Y     S+   ++N+  +   R+     
Sbjct: 305 RGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVA 364

Query: 385 IV--VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFI 440
           I+  +   G       R ++ +I     D+      +        I A  +++       
Sbjct: 365 ILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSH--------ILALYDVLPQHLSGG 416

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +  EA+     ++   D ++V G
Sbjct: 417 HFADHGEALAHLERIIKPGDGVLVKG 442


>gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Photorhabdus asymbiotica]
          Length = 459

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 89/412 (21%), Positives = 167/412 (40%), Gaps = 34/412 (8%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L  +   ++ + +   +   Q  +  I +V++D+R ++ G +F+A+ G + D H F   A
Sbjct: 4   LTLQQLAQVTDGVLNQVTERQAIDIYIRDVTTDNRKVENGSLFIALKGERFDAHDFSADA 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A++VS   ++         N P +VV++TR  +   A  +  +    ++A+TG+
Sbjct: 64  VKAGAGALLVSRVLAI---------NCPQVVVEDTRLAMGKLAGWVRQQSKARVVALTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK+SV      I ++ G + +  G  +                I +   L  L+ Q   
Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLNN--------------DIGVPLTLFRLTEQHEF 160

Query: 184 HVSVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            V    +SH G   + ++ ++       NL   H+    +  +   AK  +F  L P++ 
Sbjct: 161 AVVELGASHVGEIAYTVEMVRPETALVNNLFAAHLADFGSLASIAKAKGEIFTGL-PEKG 219

Query: 243 PAIIY---ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            AII     D AY ++V+        R       G   +   +          +      
Sbjct: 220 TAIINVESNDWAYWQQVI--GDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGS 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PLPG+  V NAL A+ L I++G     +   L +L  VPGR   +        + 
Sbjct: 278 TEINLPLPGKHNVANALAASALAISVGATLRDIRLGLSELRAVPGRLFPINLAEGKLLLD 337

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDL 409
             Y     S+ + ++ +  +   R++VV   G   +Q       +G+ A   
Sbjct: 338 DTYNANVGSMTVAVQVLSQMPGYRVMVVGDIGALGEQSEDYHRQIGETAASC 389


>gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 453

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 180/466 (38%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +        ++     T  +F                 L   S+  V  
Sbjct: 118 GKTSTKDLVAAVLS------YKYKVFKTKGNF-------NNEIGLPLMILELDSTYDVAI 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G  +   +      G  TN+G  HI+  +T++    AKM +        +  
Sbjct: 165 LEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   DD      +     A  +++  G    F I  K +       + T+    K+ +F 
Sbjct: 225 VCGNDD-----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             +PGE  + N ++   +   +G+    +   L+ +     R E +     G  I  D Y
Sbjct: 280 LDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELI--KKDGFSILNDCY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA-LDLADIAIVTDD 418
             +  +++  +  ++ I   R I V G       + +     +GK A  +  +  +   D
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E I+     G   +    N+ E I+  + ++ + D+++V
Sbjct: 398 FS-----ENIKEGYGEGCTVY---ENKEELIKDLLNIICEGDIILV 435


>gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 452

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 93/466 (19%), Positives = 171/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 452

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 172/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + LS    +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLSA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
 gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
          Length = 458

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 177/475 (37%), Gaps = 46/475 (9%)

Query: 3   LQDL-IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + DL   ++  +    ++  P       ++ V+ DSR +  G +FVA+ G   DGH F+ 
Sbjct: 1   MTDLWTSEEIAQATGGVASAPFA-----VSGVAFDSREVTGGDLFVAMKGEATDGHRFVD 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A  QGA   +VS   +            P ++V ++   L         +    ++ VT
Sbjct: 56  KAFGQGAAGAIVSQTIAQ-----------PHVLVPDSAAALEALGRTSRARMQGKVVGVT 104

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK+     +     R                    +  +  + + +  +LS +  + 
Sbjct: 105 GSVGKTGTKEALFHALDR------------VCPGEVHRSVKSYNNHVGVPLSLSRMPRES 152

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              V     +H  +   L   ++      T +   HI++  T++    AK  +FE L P 
Sbjct: 153 AFGVFEMGMNHAGELAALTRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEP- 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGK 298
              A+I  D  +   +  +A     R+L+ G+  Q      + V A      VT ++ G 
Sbjct: 212 GGTAVIPYDSPHVATLYAKAEKHAARILTFGFDPQADVRARETVPAAGGGTLVTAALPGV 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-R 357
           +  F    PGE  V NAL       A+G D A     L ++  +PGR +       GG  
Sbjct: 272 ELCFTVGAPGEHWVSNALAVLATVEALGGDLAAAGLALAEMPGLPGRGQRSVLPVEGGEA 331

Query: 358 IYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLAD 411
           + +D  Y     S+   LK +    + R I V G   +     R +   +         D
Sbjct: 332 LLIDESYNANPLSMAATLKQLGREQADRRIAVLGGMRELGDRSRELHAGLVEPLTAGQVD 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            A++  +     DP    A+ + G+  F    +   AI      +   D ++V G
Sbjct: 392 YAVLVGEE---MDP---LAQALGGVMAFDHVPDAARAIDLIRNEMRAGDAILVKG 440


>gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
 gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
          Length = 453

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 93/464 (20%), Positives = 164/464 (35%), Gaps = 43/464 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  +S   +   +  + +V +D+R + AG +FVA+VG + D H F+  AIA GA+A++VS
Sbjct: 9   LATVSGGKLYGSDITVGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDAIASGAQALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +      +          +TR       + +  +    ++A+TG+SGK+SV     
Sbjct: 69  KHLPVAVPQVVVA---------DTRIAFGQLGAWVRQQAKARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G          +       P+ L   L          + + A+  G 
Sbjct: 120 AILRECGETLYTAG----------NLNNDFGVPMTL---LRLTKDHDYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D  +       NL   H++   +      AK  +F  L P    AII AD     
Sbjct: 167 IAYTTDLTRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFAGL-PAHGTAIINADSNDLA 225

Query: 255 EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               +         S   Q +       +    +    T+     D     PLPG   + 
Sbjct: 226 NWQPQLVGKTLWRFSPQPQAEVEFGASDIQLRADATSFTLHTPRGDIAITLPLPGRHNIA 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA L +++    + +   L KL  VPGR   V        I   Y     S+    
Sbjct: 286 NALAAAALALSVDAPLSAIQAGLTKLQPVPGRLFPVRLAEHQLLIDDSYNANVGSMTAAA 345

Query: 374 KNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVT-------DDNP--- 420
           + +  +   R++VV      G + +   R +         D  + T        DN    
Sbjct: 346 QVLGDMPGYRVMVVGDMAELGDEAEACHRQVGEAAKAAGIDCVLSTGSLSQLISDNSGNG 405

Query: 421 -RSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNK 458
               +   +   +   +    E      G+R  A+   ++ L +
Sbjct: 406 EHFANKAALIERLRTLLSEHQEITILIKGSRSAAMEQVVQSLQE 449


>gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 452

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 171/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
 gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
          Length = 473

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 180/469 (38%), Gaps = 39/469 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI+ ++ F +         +S DSR +  G +F  I G+  DGH F   A AQGA 
Sbjct: 6   DKQALISAMNGFTVGCLPETFPGISIDSRTLLEGDVFFCIKGHHLDGHDFAAHAYAQGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV    +        + + P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLVV----AENRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q  +  G     +               +  +   +   L+ +       +    
Sbjct: 122 KEALKQALETVGKVHANL--------------ASFNNCWGVPLTLARMPIDSDYAIFEIG 167

Query: 190 SSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H    +  +  +       T +   H+++ ++ +   +AK  +FE L  K+  A++ A
Sbjct: 168 MNHKDEIRPLVKLVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEGL-DKDGIALLNA 226

Query: 249 DDAYSKEVMKRAHNAGCRVL-SVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD +   ++++A   G + + S G         K+V  + N   + + ++ KD       
Sbjct: 227 DDHFFSYLLQKAKQFGVKKIRSFGQSNCADYQAKEVRRLENCSCMIVHLDQKDVMIKIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRI-YVD--Y 362
           PG+  V N L     C A+G D A V+  L +  +  GR      + S GG    +D  Y
Sbjct: 287 PGQHMVQNGLSVLAACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTFHLIDESY 346

Query: 363 AHTSNSLEMILKNIRTIT---SGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
                S+   L  + T      GR I +       G   ++  R ++  I +    +  +
Sbjct: 347 NANPTSMRAALDLLATGPIGIGGRRIAILGDMLELGDHSEKLHRDLLQPICVSGVHLVFL 406

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +      +  ++   +       N  E +      ++  D++++
Sbjct: 407 VGKEMKF-----LANDLSSHV-NVCHSENIEEILPLVFSEISNGDLIMI 449


>gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
 gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
          Length = 452

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 85/467 (18%), Positives = 178/467 (38%), Gaps = 37/467 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  ++  +  N + +     + ++I  V  DSR I+ G++++  VG + DGH FIPQ
Sbjct: 1   MKNMTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +GA   +     +            P + V++    L   A     +    I+ +TG
Sbjct: 61  VFDKGALCTLSEKDLNNPKG--------PYIKVESVATALKDIAEFYRKQLSCKIIGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  + +       +     T  ++  +       P+ + K    +  +  
Sbjct: 113 SVGKTSTKEIIASVLEE------KFKVLKTEGNYNNE----IGEPLTILK----IRDEHE 158

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     S   + HRL  + +      TN+G  H++    +   F AK  +F+    K+
Sbjct: 159 VAVIEMGISDFEEMHRLAKVSRPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDY-ASKD 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              ++  DD     V K  +        +      + +K         +V I    K+ D
Sbjct: 218 CFVVLNGDDDKLSNV-KEVNGHAPVFFGIDTDRDVMAIKYESLGIQGTKVKIKYFDKELD 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + P+PG   +YNA+ A  +    G+    +   +  L  + GR     TN  G  +  D
Sbjct: 277 TVIPIPGYHMIYNAMAAVCIGSYFGMTLDEIDSGIRNLKAIGGRNNIFTTN--GITVIDD 334

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM---GKIALDLADIAIVTD 417
            Y     S++  + N+ +  +GR + + G   +  +  + +    G+ A+   DI +   
Sbjct: 335 CYNANPMSMKASI-NVLSQANGRKVAILGDMFELGENSKKLHKEVGQAAVGKVDILVCIG 393

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +      I    I G    +   N+ +        + + D +++
Sbjct: 394 NLSK-----DIAEAAIEGGCNTLYFPNKADFEDNLSAYIKEGDTVLI 435


>gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 457

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 150/395 (37%), Gaps = 30/395 (7%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
             SI    +R+  I  V  D+R I+ G +FV  VGN  DGH F+ QA   GA A      
Sbjct: 13  DSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATFWQKN 72

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                      ++ P+++V++T   L   A +   +    ++A+TG++GK++    +  I
Sbjct: 73  VP------NPPTDFPVILVEDTLLALQELAMKYMQEVRPKVIAITGSNGKTTTKDIMAAI 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + S    +  G          +       P  +   L+      V  + +  +     +
Sbjct: 127 VETSYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAVLEMGMNHRHEIE 173

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K      TN+G  HI+Y  ++Q    AK+ +   L P            Y + +
Sbjct: 174 VLSKIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNPSGILIY-----PYEETL 228

Query: 257 MKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +    +   R L+ G   +  I+  ++ A         + E  D +   P+ GE  V+N 
Sbjct: 229 LLSQIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNT 287

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           + A      IGI+   +   L+ +     R E++ T   G RI  D Y  +  +L+ +LK
Sbjct: 288 MAAMLAAREIGIEGKKIQTALKNMERSKSRLEWL-TAKNGARILNDAYNSSPTALQTVLK 346

Query: 375 NIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +        +V     +  +    +  + A 
Sbjct: 347 TFMHMDSKGKPKYLVLADMLELGELSVLLHQESAE 381


>gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
          Length = 450

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 148/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 20  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 73  KDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 127 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +          V
Sbjct: 180 AITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLVQT---V 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 236 TTFGIGNGDVHAE--VTAKGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT-ITSGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   +  +T GR I
Sbjct: 292 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLLTKGRRI 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 351 AVLADMLELGKDSLSMHAQMSEH 373


>gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 459

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 156/409 (38%), Gaps = 28/409 (6%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L  +   ++ + +   +   Q     I++V++DSR +  G +F+A+ G + D H F   A
Sbjct: 4   LTLQQLSQVTDGVLNQVTEQQAANICISDVTTDSRRVGNGSLFIALKGERFDAHDFFADA 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A++VS    +         N P +VV +TR  +   AS +  +    ++A+TG+
Sbjct: 64  VKAGAGALLVSRVLDI---------NFPQVVVKDTRLAMGKLASWVRQQSNARVVALTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK+SV      I ++ G + +  G  +                I +   L  L+ Q   
Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLNN--------------DIGVPLTLFRLTEQHEF 160

Query: 184 HVSVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            V    +SH G   + ++  +       NL   H+    +  +   AK  +F  L  K +
Sbjct: 161 AVVELGASHVGEIAYTVEMARPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLSEKGT 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I    + ++            R       G   +   +          +       + 
Sbjct: 221 AIINMESNDWAHWQQVIGDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEI 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG+  V NAL A+ L I++G     +   L +L  VPGR   +        +   Y
Sbjct: 281 NLPLPGKHNVANALAASALAISVGATLQDIRLGLSELKAVPGRLFPINLAEGKLLLDDTY 340

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDL 409
                S+ + ++ +  +   R++VV   G   +Q       +G+     
Sbjct: 341 NANVGSMTVAVQVLSQMPGYRVLVVGDIGALGEQSADYHRQIGETVASC 389


>gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces albus J1074]
 gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
 gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
          Length = 474

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 168/478 (35%), Gaps = 51/478 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +   P    +   ++   V  DSR    G +F A  G + DGH +   
Sbjct: 1   MIALSLAEISSIVGGQPADIPDLDAQVTGPVVIDSRLAAPGSLFAAFAGERADGHDYAAT 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++ +                P LVVD+  + L   A  +  +    ++A+TG
Sbjct: 61  AVETGAVAVLATRPV-----------GVPALVVDDVERALGALARAVVERLGTTVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V Q+  R   + +  G  +                 +L            
Sbjct: 110 SAGKTSTKDLVAQLLTRVAPTVWTPGSLNNEIGLPLTALRAEADTRHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++         G   N+G  HI     ++    AK  L E L P++ 
Sbjct: 158 -VLEMGARGIGHIRYLTGLTPPRIGVVLNVGSAHIGEFGGREQIAQAKGELVEAL-PEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ-QVTISVEGKDF 300
            AI+ ADD Y +++  R      RV++ G      I  + V    N +   T+       
Sbjct: 216 VAILNADDRYVRDMASRTK---ARVVTFGEAPEADIRAENVRLTENGRPAFTLHTPSGCG 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    L GE  V NAL AA +   +G+    + + L +   +      V     G  I  
Sbjct: 273 DVTMRLYGEHHVSNALAAAAVASELGMPVDEIAQALSEAESLSRWRMEVTERPDGVTIVN 332

Query: 361 D-YAHTSNSLEMILKNIRTITSGRI------IVVFGCGG---DRDQGKRPIMGKIA--LD 408
           D Y     S+   L+ +  +   R         V G      D    +   +G++A  L+
Sbjct: 333 DAYNANPESMRAALRALVAMGGARRGEGGRTWAVLGQMAELGDEALTEHDAVGRLAVRLN 392

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +  V       E           G      +   +   A+      L   DV++V
Sbjct: 393 VSKLVAVGG----REAAWLQMGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 446


>gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 485

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 100/480 (20%), Positives = 163/480 (33%), Gaps = 53/480 (11%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  +   P+      I+ +S DSR +Q G  F AI G   DGH F   AI  GA  +VV
Sbjct: 10  LVAAMDGRPLGPMPDGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKAGAGVLVV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +         +  R   PI+VV++    L         +    I+AVTG++GK++    +
Sbjct: 70  AEG----KLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH- 192
           + + Q  G                  +  +  +   +   L+ +       V     +H 
Sbjct: 126 RHVLQAVGKVHA--------------SAQSFNNHWGVPLTLARMPDDCDYAVFEIGMNHP 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              +  +  ++      T +   H+ + +       AK  +FE L P E  A++  DDA 
Sbjct: 172 DEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEP-EGAAVLNRDDAR 230

Query: 253 SKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            K + K AH AG   V   G   +    L K     +   +T  + G +       PG  
Sbjct: 231 FKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVTARIGAPGRH 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---------RIYVD 361
            V N L   G    +G D   V   L  L    GR +       GG            +D
Sbjct: 291 MVQNVLAVLGAAHLVGADLDKVASALADLSAERGRGKRHVLRHPGGSTSSHPGGLITLID 350

Query: 362 YAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADI 412
            ++ +N   M               GR I V G   +       +   +A          
Sbjct: 351 ESYNANPASMAAAMALLNATPVTGEGRRIAVLGDMLELGDHSTKLHAALADLIVGTGTQT 410

Query: 413 AIVTDDNPRSED---PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
             +     R+     P  I+ E   G+                +  L   DV+++ + KG
Sbjct: 411 VFLGGPEMRALAEALPADIKTEYRAGVEELKPV---------LLAALKPGDVVMIKSSKG 461


>gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
 gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
          Length = 450

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 147/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 20  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 73  KDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 127 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +          V
Sbjct: 180 AITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLVQT---V 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 236 TTFGIGNGDVHAE--VTAKGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 292 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 351 AVLADMLELGKESLNMHAQMSEH 373


>gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 452

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 171/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
 gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
          Length = 456

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 164/481 (34%), Gaps = 62/481 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  K+       +     +   ++++ V  DSR ++   +F+AI G + DGH+FIPQ
Sbjct: 1   MKNMTLKEIAVACGGIYYGDDESYYKEVSSVVIDSRKVEKDCLFIAIRGARVDGHMFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            I  GA   +         +        P ++V +  + L   A          ++ VTG
Sbjct: 61  TIRDGALCALSEKRIENASY--------PYILVTSCEQALKDIAEHYRKSLNLKVVGVTG 112

Query: 123 TSGKSSVASFVQQ-------ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + GK+S    +         + + +G  + +IG   TI +                    
Sbjct: 113 SVGKTSTKEMIASVLGEKYNVLKTAGNFNNEIGLPLTIFNIR------------------ 154

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V  + +  S+ G  +      +      TN+G  H+++ +++     AK  +F 
Sbjct: 155 --EEHEVAVLELGISNFGEMERLAKIARPDICVITNIGVAHLEHLKSRDGILKAKTEIFL 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            + P     I+  DD     V   A+        +     F   +               
Sbjct: 213 YMNP-NGSIILNGDDDKLSTVHP-ANGIQPVFFGLDDSRDFYADQVESCGLRGTNAVFHT 270

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               F     +PGE  V NAL       A+G++   +   +E L  + GR   + T+S  
Sbjct: 271 PNSTFSAHISIPGEHMVLNALAGIAAGYALGMNDEEIKAGIEALVPLAGRNNLIETDSL- 329

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLAD 411
             I  D Y     S +  L  +    + +I V   +F  G    Q    +    A    D
Sbjct: 330 -TIIDDCYNANPASTKASLDVLAKADTRQIAVLGDMFELGPTEKQMHYEVGKYAAGLGID 388

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLV 463
           I +            ++   +  G           + E  +       A  +LN +D ++
Sbjct: 389 ILVC---------IGQLSEHMATGASEQCSKTQVFYFETKDDF--FEQADRILNPKDTVL 437

Query: 464 V 464
           V
Sbjct: 438 V 438


>gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 460

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 140/388 (36%), Gaps = 30/388 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+EVS+D+R+I A  +FVA+ G + D H F   A   GA A++VS    ++    
Sbjct: 19  GSDTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTAKDNGAVALLVSRHLPVE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRS 140
                 P ++V +TR  L L  + L  +  +      LA+TG+ GK++V      I    
Sbjct: 75  -----LPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGSCGKTTVKEMCAAILATK 129

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G      G          +      +P+ L   L          + + A+  G   +  +
Sbjct: 130 GKVLATAG----------NFNNDIGAPLTL---LRLTPEYQYAVIELGANHLGEISYTTN 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +K       NL   H++   + +    AK  +FE L  K + A+I       +      
Sbjct: 177 LVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGL-AKGATAVINLASNDRELWAPLL 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +      S   Q  F                +              G   V NAL AA 
Sbjct: 236 ADKNVITFSSEEQADFFASDIELDSDGYPHFELHSPQGSVAIHLSQLGLHNVSNALAAAA 295

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           L   +G   A + + LE    V GR   V     G R+  D Y  +  S++  +  + + 
Sbjct: 296 LTSVLGATLAEIKQGLETATNVKGRVA-VSQPMVGLRVIDDTYNASVASVKAAIDLLASY 354

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G+   + G   +  +    +  ++ L
Sbjct: 355 -QGQRWFILGDMAELGEESENLHREVGL 381


>gi|310642991|ref|YP_003947749.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Paenibacillus polymyxa SC2]
 gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus polymyxa SC2]
          Length = 467

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 171/472 (36%), Gaps = 44/472 (9%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI-AQGAEAIVVSSAY 77
           ++      ER +  V +DSR  Q+  +FV +VG + DGH ++ Q +  +GA A +    +
Sbjct: 15  TLHAEADAERMVEGVFTDSRRPQSLGLFVPLVGERFDGHHYVQQIVSERGATAYLWQKDH 74

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                          + V++T + L   A+    +   +++ +TG++GK++    V  + 
Sbjct: 75  GA-------PPTVNAIEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTKDIVNALL 127

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                     G T  +     +       P+ +   LS      +  + +  S  G  + 
Sbjct: 128 ----------GTTFKVHKTEGNYNNHIGLPLTV---LSMPQDTDILVLEMGMSGRGEIRL 174

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
             +  +      TN+G  H+    ++     AK+ +   + P     I   D+    +V+
Sbjct: 175 LANIAQPDVAVITNIGESHLLQLGSRTEIARAKLEIASGIKP-GGLLIYNGDEPLLPQVL 233

Query: 258 KRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                       + + G                +  + I+ +     F  PL G+  V N
Sbjct: 234 AEPETVKPEGLELFTFGLAADNDDYPTEITSDGEGSLFITAQSGQEAFRLPLLGQHNVVN 293

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A  +     +D+  + + L  L +   R E V  +     +   Y  +  S++  ++
Sbjct: 294 GLAALAVARHFNVDADHIRKGLSSLKLTGMRIEVVKCSDGLTVLNDAYNASPASMKAAIQ 353

Query: 375 NIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +    T GR I V G   +    ++     +G+ A      A+ T           + A
Sbjct: 354 TLSAYKTGGRKIAVLGDMLELGAEEKQFHEEIGRFAAKHNIEALFT--------YGALGA 405

Query: 431 EIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
            I  G  G +         ++ + I+     L+  D+++V A +G     IV
Sbjct: 406 SIAQGAQGTMPTANVHAYTDKQKLIQHLRSYLHADDIVLVKASRGMRLEEIV 457


>gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 511

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 176/423 (41%), Gaps = 32/423 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ ++       ++ +       +E +I  ++  +  +  G IFVAI G   DGH FI
Sbjct: 1   MKLEKILNN-----LDIIDANFEIDKEIEIKNIAFHTDDVVEGGIFVAIKGYVTDGHKFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GAE  VV               N   + V+N+R  L+  A   Y    +  N++
Sbjct: 56  KKARELGAEIAVVEDYSE---------ENIKQIRVENSRIALADMARNFYEDPSKDMNVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +T T+GK++ A  V  I +    ++  IG   T  +     + LTTP  + L      +
Sbjct: 107 GITATNGKTTTAFMVNSILEEDKRNTGIIGTVLTRYADVMIPSVLTTPESLTLQSYFRDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GVT V++E SS   + +R   I     +F NLGR+HID H + + YF  K RL    
Sbjct: 167 KDKGVTDVTMEVSSSAQELYRNKNIDFDIVTFNNLGREHIDQHGSFENYFRFKSRLIRH- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-- 295
             +++ AI+ ADD     +  +   A     S+        ++ +     K + T  +  
Sbjct: 226 AKEDALAILNADDEKIYSLRDK-TKAQVLSFSLESNDAEFGIQDLDLSSGKGKFTFKINR 284

Query: 296 ---------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                    E  +F+      G   V N+LVA  + + + ID+  +   L+    V  RF
Sbjct: 285 DIKIKDFILEKSEFNIELGSVGYSSVMNSLVAIIIGLCLKIDTETIKRALKNFKGVERRF 344

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +       +I  D+     +++  ++ ++ +    + +++   G R       + +  
Sbjct: 345 ELIFDEE--FKILDDHFANEKNIDATMETLKEMDYKNLNILYAIRGKRGVEVNREITERL 402

Query: 407 LDL 409
           +  
Sbjct: 403 VKW 405


>gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
 gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
          Length = 454

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 90/411 (21%), Positives = 160/411 (38%), Gaps = 37/411 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q +   +   + K+N V++D+R I+ G +F A+ G + D H F+  A   GA A +V 
Sbjct: 7   IAQWTGGALHGDDLKVNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNGGAIAALVE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                 D          ++ V ++RK L   A     +     LAVTG +GK++V     
Sbjct: 67  HEQDCFDN---------VVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVKEMAA 117

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +           G  +T  +F  D  +        A+    +   G       A +  L
Sbjct: 118 TMLGE--------GTLATNGNFNNDVGVPLTLLRLRAEHRYAVIELGANAPGEIAWTSSL 169

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   +      TN+   H++   + Q   +AK  +F     +   AI+  DD+++ 
Sbjct: 170 -------TRPQVVLVTNVTGAHLEGFGSMQGIADAKAEIFTGCT-QGGQAIVNNDDSFAD 221

Query: 255 EVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              ++A  AG  V+ V        G  ++ + +    +  +  +   G     L PLPG 
Sbjct: 222 FFAEKARAAGLTVVRVSMDESTRAGADLYAENIVLHRDSAEFVLQPLGDA--VLVPLPGA 279

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            QV NAL+A     A+G     VL  L  L  VPGR   + +   G  +   Y     S+
Sbjct: 280 HQVSNALMACAAVRALGASLPQVLPRLAALKPVPGRMH-IQSAGTGTVVDDTYNANPGSV 338

Query: 370 EMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALD--LADIAIVT 416
              +  +    + +++V+   G    +       +G+ A    +A + ++T
Sbjct: 339 RAAIDWLAAQPAPQMLVLGEMGELGPQADSLVEALGEYAQQAGIAGLVVMT 389


>gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 472

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 144/378 (38%), Gaps = 25/378 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ +   D  + ++ +    +  R   +  V  DSR ++ G +FV + G   DGH +I Q
Sbjct: 1   MKAIKLMDVVKAVHAIDYTALD-RFISVTGVEFDSRKVKPGDLFVPLSGGATDGHDYIQQ 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI  GA A + S         A       I++VD+T   +   A+         ++ +TG
Sbjct: 60  AIKNGAVATLWSKEA-----QAAPADQIAIVLVDDTLVAMQALANYYRNSLNPKVIGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++       + +       +     T  ++                 L   +   V
Sbjct: 115 SNGKTTTKDMTANVLK------AKYKVHKTEGNY-------NNEIGLPYTLLQMPADTQV 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +  S  G  +      +      T +G  H+++  ++     AK+ + + L  ++ 
Sbjct: 162 VVCEMGMSDFGEIEVLSKIAQPDIAVITLIGESHLEFLGSRANIAKAKLEILKGL-KEDG 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I  A++   +E   +A     R   +     F +   +    NK     +++ +    
Sbjct: 221 LFIYPANEPLLQE-AGQALGDRARSFGLDNTADF-YAYDLKEDKNKTYFHTNIDDQ-VLC 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+ G + V NA++A  +   + +     +  L +  +   R E++ T S G  I  D 
Sbjct: 278 SIPVMGAYNVGNAMIALTVAQELKVPIEQAIFQLSQFKLTKNRLEWL-TASNGASILNDA 336

Query: 362 YAHTSNSLEMILKNIRTI 379
           Y  +  S++ +LK+   +
Sbjct: 337 YNASPTSIKAVLKSFSQV 354


>gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
          Length = 452

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 93/466 (19%), Positives = 172/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGAIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
 gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
          Length = 464

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 87/416 (20%), Positives = 153/416 (36%), Gaps = 27/416 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I +   +L   L    +   E     +S+D+R      +F A+ G K D H ++ +AI 
Sbjct: 1   MIKQTTQQLAQTLKGKLLGSGEVVAENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV    ++         N P ++V++TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      Q+    T  +   D  +           L          V
Sbjct: 112 KTTVKEMTAKILQKVTACEDQV--LYTFGNLNNDLGVP-------LTLLRLTPEHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   +      AK  ++  L      AI
Sbjct: 163 ELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGL-KTGGKAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISVEGKDFD 301
           +     Y  E  K   +   +      + K  +     K V    N  + T+     + +
Sbjct: 222 VNLAH-YYPEWQKEIGDHELQSFCYTGEDKDSYVDFWAKNVELHLNGSRFTLHTPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  GE  V NAL A  L +A+G D   V   LE+   V GR   +        I   
Sbjct: 281 INLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKENVLFIDDS 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           Y    +S++  +  ++   + RI V       G D     + +   +     D+ +
Sbjct: 341 YNANVDSMKSAVSVLKQYPAFRIFVAGDMAELGKDSPACHQEVADFVKQAKLDLVV 396


>gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 463

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 96/443 (21%), Positives = 168/443 (37%), Gaps = 29/443 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS+DSR  QAG IF+ + G + DGH FI +AI +G  A+V + A+  Q  +     +  
Sbjct: 29  GVSTDSRTAQAGEIFIPLRGERFDGHDFIDRAIKRGVRALVAAEAW-WQRQNHQFPKDLT 87

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I++V  T + L   A     +    ++A+TG+ GK++    +  +               
Sbjct: 88  IVLVPETLRALGDLAHCWRQRFSGPVIAITGSCGKTTTKEMIALVLAS------------ 135

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFT 210
                   N L   + I L + L  L++   T V     +H  +  RL  I +      T
Sbjct: 136 --RFRVLKNELNLNNLIGLPQTLLALNTGHETAVVEMGMNHFGEIRRLAQIARPDIAVVT 193

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H++   + +    AK  + + L       I  ADD   + +    H+   + LS 
Sbjct: 194 NVHAAHLEGLGSLEGVAQAKAEVIQGL-RNNGLIIYNADD---QRLRAALHHFKGQTLSF 249

Query: 271 GYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G+    +             Q+  I  +GK +     LPG  Q+YNAL AA + +A+G+ 
Sbjct: 250 GFDPGAQIQAGPPCQCGVWGQRAEIRHQGKIWPLELQLPGRHQLYNALAAAAVGLALGLP 309

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-- 386
           +  + + L +   +  R +     S        Y     S+ M L+ + ++ +    V  
Sbjct: 310 AEQISQALGRFAGLKHRSQMQCHTSGIHIFNDCYNANPGSMAMALQTLASLKNQGRAVAA 369

Query: 387 ---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
              +   G +     R +    A    D+ +V      S     + A + H         
Sbjct: 370 LGDMLELGRETIPAHRQLGALAAQLQVDLLVVWGKFKDSVRQGALAAGMPH--SRIYLVA 427

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +  E            D L+V G
Sbjct: 428 SHAEGADIIRGFCRPGDTLLVKG 450


>gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 423

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 170/457 (37%), Gaps = 38/457 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T S+F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TASNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGK---- 392

Query: 423 EDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNK 458
                  +++I    G  E   ++   I     +L +
Sbjct: 393 ------LSQVISHASGVGEHFADKAALIARLHALLQE 423


>gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
 gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
          Length = 477

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 93/466 (19%), Positives = 168/466 (36%), Gaps = 38/466 (8%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            ++I   +  P+      I  +S DSR ++ G  F AI G++ DGH +   A+A GA  +
Sbjct: 8   ADMIAITAGRPVGNLPTGITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANGASLL 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV+ A       A  R   P++VV++    L   A     +    I+AVTG+ GK++   
Sbjct: 68  VVAEA----KLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKTTTKE 123

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++Q    SG     +               +  +   +   L+ + +     V     +
Sbjct: 124 MLRQALAPSGRVHAAV--------------ASFNNHWGVPLTLARMPADTEFGVFEIGMN 169

Query: 192 H-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H G  +  +  ++      T +   H+   +  +    AK  +FE  + +    I+  D+
Sbjct: 170 HSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEG-VEEGGSVILNRDN 228

Query: 251 AYSKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A  +++ + A  AG   +L+ G   K    L    +      +   + G+  +    +PG
Sbjct: 229 AQFEQLEEAAQEAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHT 365
                NA+   G     G +    LE L  L  V GR +       GG   +    Y   
Sbjct: 289 RHIADNAMAVLGAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNAN 348

Query: 366 SNSLE---MILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             S+     +L    T   GR + V       G    Q    + G +     +   +   
Sbjct: 349 PASMRAAIAVLAETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWL--- 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E    +R  +   +   I      E    A++ +   D L+V
Sbjct: 406 --AGEAMAALRDALPDSVT-VIWFPTTAELTDFALQWVQPGDALMV 448


>gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 455

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 169/463 (36%), Gaps = 28/463 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +L   L+     + +  ++ +S D+R IQ G +FV   G   +GH ++ QA  +G
Sbjct: 2   KKTLKQLAAWLNEDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +                  P+L VD+    L   A     +H    + +TG++GK+
Sbjct: 62  AGASLWQKD------EPNPPDGIPLLFVDDPEIALQEMARAYRLEHKAKFIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +      +G  +       TI +F                 L       V  + +
Sbjct: 116 STKDIL------AGTLAPFFKVQKTIGNFNNQLG-------LPITILQLDEDTEVAVLEM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +      +      TN+G  H+    ++     AK  + + + P E      
Sbjct: 163 GMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQP-EGLLFYD 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            D+   +E++  A       ++ G +    ++   + A  N    T +    + DF   +
Sbjct: 222 GDEPLLQELV--AKEQHINAVAFGLEPDNLLYADHIHANANGSSFT-THGMIEGDFFISV 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+ QV N L+A  +   +G+++  +   LE + +   R + V   +    I   Y    
Sbjct: 279 LGKHQVKNTLIAMLISNQLGLNNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAP 338

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSE 423
            S++  ++ I T T      +V G   +    ++     +A  + +  I  V     R  
Sbjct: 339 TSVKAAIQFIATSTIRPEKWLVLGDMLELGPDEQRFHEGLAEYINEQEIDYVCLFGARMT 398

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              ++  E        +   +   AI   +E+ N+  ++++ G
Sbjct: 399 HLYEVLKEDFE-ADRLLYTEDDYTAIIEKLELANESSIVLLKG 440


>gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
 gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
          Length = 467

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 166/458 (36%), Gaps = 43/458 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +N V  D+R +  G +FVAI G + DGH FIP A   GA A V             I
Sbjct: 40  DLTVNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAFESGAAAAVSDRE---------I 90

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P ++V +TR+ L   A          ++ VTG+ GK++    +  +   +G     
Sbjct: 91  ETDRPYILVKDTREALLDLARCYRRAFDGLVVGVTGSVGKTTTKEMIAAVLS-AGYK--- 146

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                T  +          + I L + +  L S+     + +  S+ G            
Sbjct: 147 --TLKTQGNL--------NNAIGLPRTIFELDSTYEAAVIEMGMSALGEISLLTRTALPD 196

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  H++   T++    AK+ + E + P  +P +I  D+   + V     +   
Sbjct: 197 IGVITNIGVSHLETLGTRENILKAKLEILEGMAP-GAPLVINGDNDLLQTVQ---LDRPV 252

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
               +           +       +  I         L P  GE  V NAL    +    
Sbjct: 253 LTCGIDNPDADYRAVNIQPRGFDTEFDIVYGENAVHVLLPAIGEHNVLNALFGFAVGRFA 312

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGR 383
           G++ A +   L        R      N  G  +  D Y  + +S+   L  ++ +  +GR
Sbjct: 313 GMEDAAIATALGTYTPSGMRQNTRTVN--GVMLIEDCYNASPDSMRAALTTLQQLSCAGR 370

Query: 384 IIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            I V G   +     Q      G++A      A+        E  +        GIP  +
Sbjct: 371 KIAVLGDMLELGPVSQQAHAEAGELAQKCGVDALFCFGALSRETAKH-----GEGIP-HV 424

Query: 441 EKGNRIEAIRTAIE-MLNKQDVLVV-AGKGHETVHIVT 476
           E  +  +++  ++   +   D ++  A +G +   ++ 
Sbjct: 425 EWFDDKQSLAQSLSGFVQPGDAVIFKASRGMKLEEVIH 462


>gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
 gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
          Length = 452

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 101/497 (20%), Positives = 175/497 (35%), Gaps = 65/497 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+++            +I      E  ++ VS+D+R +  G +FVA+ G + DGH +I
Sbjct: 1   MTLKEIAA----------AIGADGTFEGAVDCVSTDTRALPPGCLFVALEGERFDGHDYI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA   V   A+  +D+ A      P++ V NT++ L   A     +   + + +
Sbjct: 51  TAALRGGAACAV---AHERRDYGAG-----PVMYVKNTQRALMDLARAYRARFDIHCVGI 102

Query: 121 TGTSGKSSVASFVQ-------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG+ GK++    +        Q  +  G  + +IG   T+                    
Sbjct: 103 TGSVGKTTTKDMIAAAVSAGFQTLKTEGNLNNEIGLPKTL-------------------- 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L          V +     G      D  +   G  TN+G  HI+   +++    AK+ L
Sbjct: 143 LGLTRGHEAAVVEMGMQGFGEIAALADVARPTLGVITNIGVSHIEQLGSRENIMKAKLEL 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             + LP  +P  +  DD   K+V         R   V      +H   +     +   T+
Sbjct: 203 -ADALPDGAPLFLCGDDDLLKKV--SIPRLDVRFYGVENPACALHAADIREADAQTAFTL 259

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G       P  G   V NA+ A G+ +A+GI +      L        R   V   S
Sbjct: 260 QYPGGQVGATIPCIGLHNVRNAVAACGVGMALGIPAEKCAAALAAYVPSGMRQRVVHWGS 319

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGC----GGDRDQGKRPIMGKIAL 407
               +  D Y  + +S+   L  +  +  +GR I V G     G       R +    A 
Sbjct: 320 --VTVVEDCYNASPDSMRAALTTLSAMRCAGRRIAVLGGMLELGAYSQAAHREVGRAAAG 377

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG- 466
              D+ +         D          G        ++ + +      L   D++ V G 
Sbjct: 378 AGVDLLL-----AYGGDACYYSQGAKEGGVESETFSDKADLLARLRGALGPGDIVWVKGS 432

Query: 467 KGH---ETVHIVTNGEK 480
           +G    E +  +  GE+
Sbjct: 433 RGMRMEEVLQGLYKGER 449


>gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
 gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
          Length = 450

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 145/392 (36%), Gaps = 30/392 (7%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           I   Q    +I EV+ D+R +  G +FVA+ G + DGH F             V++    
Sbjct: 11  ISDTQRNNIEITEVTIDTRQVTGGCLFVALKGERFDGHDFAEN---------AVAAGAGA 61

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              S  +    P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++
Sbjct: 62  LLVSKRLLVGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQ 121

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G   +      T  +F  D  +           L          + + A+  G   +  
Sbjct: 122 CGKVLY------TAGNFNNDIGVPL-------TLLRLTPEHDFAVIELGANHVGEIAYTT 168

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D  +  +    NL   H++   +      AK  +F  L P    AII AD        + 
Sbjct: 169 DLSRPESALVNNLSAAHLEGFGSLAGVAQAKGEIFAGL-PANGTAIINADSNDWPHWQET 227

Query: 260 AHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            H    RV     Q          +V         T+           PLPG   + NAL
Sbjct: 228 LH--HKRVWRFSSQAGEDIDFFASEVRITAQATHFTLHSPFGTQAIELPLPGRHNIANAL 285

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +++G D A V + L +L  VPGR   +        +   Y     S+    + +
Sbjct: 286 AAAALAMSVGADLAAVRQGLTQLQAVPGRLFPIQLAVGKLLLDDSYNANVGSMTAAAQVL 345

Query: 377 RTITSGRIIVVFGCGGDRDQ--GKRPIMGKIA 406
             +   R++VV       D        +G+ A
Sbjct: 346 AEMPGYRVMVVGDMAELGDTAIDCHRQVGEAA 377


>gi|149195164|ref|ZP_01872255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter
           mediatlanticus TB-2]
 gi|149134716|gb|EDM23201.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter
           mediatlanticus TB-2]
          Length = 408

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 169/381 (44%), Gaps = 34/381 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + +TGT+GK++ A  +  + +  G +    G      +  +     T +   +   + 
Sbjct: 56  KFIGMTGTNGKTTTAFVLSFLLKNLGFNVVTQGTEGLYFNLEK-KENKTLTTPDIFTTIK 114

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +E SSH + Q+R++GI+  A   T+  +DH+DYH++   Y   K   F+
Sbjct: 115 RAYKYKPDFFVMEVSSHAIAQNRIEGIRFDAKIMTSFSQDHLDYHKSIDEYKKVKESFFQ 174

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +    ES  +I            +  N    ++ +G                     + V
Sbjct: 175 D----ESVKVING--------KLKMENGKYSIIEIG-----------NYDFKVYNKNLYV 211

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             K      P+ GEF   N  +A      +     +++   L     V GR E V   S+
Sbjct: 212 LEKPIVNDIPMAGEFNKMNFSLALKTAEILTNSSFSILNSQLNNFKGVSGRMEIV---SK 268

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VD+AHT + +E +L ++     G  IVVFG GG RD+ KR +MG++A   A+  I
Sbjct: 269 NPLIIVDFAHTPDGIEKVLSSV----KGEKIVVFGAGGKRDKEKRELMGEVASKYAEFLI 324

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +T+DNPR E+P KI  +I  G+   +    +R EAI+ AI++     +L V GKG E   
Sbjct: 325 ITNDNPRCEEPMKIANDIAKGVSIPYEIILDRKEAIKKAIKLAKNGKILFVLGKGDEEFI 384

Query: 474 IVTNGEKKMSVDCDIIREILG 494
              N ++K   D ++I EILG
Sbjct: 385 EYCNKKEK-FKDKNVILEILG 404


>gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 452

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 171/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRLVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii SDF]
 gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii]
          Length = 466

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 144/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + A+  G   +    +
Sbjct: 142 TLINRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+   AI+   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQ-GVAIVPQQDDFTAEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +++S G  G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 H--QIMSFG-AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPHLF-IDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAGLPLDHIV 398


>gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
 gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
          Length = 464

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 172/466 (36%), Gaps = 37/466 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL++   + P    E ++++V++DSR    G +F A+ G   D H F+ Q   QGA+ 
Sbjct: 9   LSELLSAKEVNPPSA-ELEVDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQGAKI 67

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV  A            + P LVV NT+K L   A  +  +    + A+TG+SGK++V 
Sbjct: 68  LVVEHADP--------AVSVPQLVVANTKKALGQLALWVRQQVNPKVAAMTGSSGKTTVK 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                I Q++  ++ ++    T  +F  D  +         +    +   G  H    A 
Sbjct: 120 EMTAAILQQTAKNADEV--LFTAGNFNNDIGVPLTLLRLTDQHRFAVIELGANHAGEIAY 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +  L        +       N+   H+    + Q    AK  +++ L  +   A+I  D 
Sbjct: 178 TTQLA-------RPDVALVNNVAPAHLAGFGSLQGVAKAKGEIYQGLT-ENGIAVINQDC 229

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            Y     +       +  S+ +    I+ + +   +      +     + +   P  G  
Sbjct: 230 NYLPMWQQNIAQHPIKRFSLTHSEADIYARAIQHTNIGFSFVLCTPQGEIEIELPYLGLH 289

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL AA L IA+G     V + L     V GR   +  NS+   +   Y    +SL+
Sbjct: 290 NVSNALAAASLAIALGATLDDVKKGLALGKRVKGRLFPIEVNSQLTLLDDTYNANVDSLK 349

Query: 371 MILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +  + +      ++V       G   +Q  R +         D  +      R     
Sbjct: 350 AAISVLYSAPQQVKVLVVGDMAELGESTEQCHRQVAEAALNANLDQVMSFGQYSR----- 404

Query: 427 KIRAEIIHGIPGFIEKGNRIEAI----RTAIEMLNKQDVLVVAGKG 468
                +I    G     ++ E I    + A + +     +++  KG
Sbjct: 405 -----VISQTCGGKHYQDKAELIADLQQYAAQQMKAGKTILILVKG 445


>gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 466

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 159/440 (36%), Gaps = 44/440 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++D+R+++ G IF+A+ G   DGH +   AI +GA A++ +              +
Sbjct: 30  VYGITTDTRNLEPGQIFLALRGETFDGHDYAEVAIKKGAIAVIANRD------QGYHLQD 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L VD+T +     A     +    ++AVTG++GK++    +  +    G        
Sbjct: 84  IPQLQVDDTLQAYQQLARWWRDQFDIPVIAVTGSAGKTTTKELIAAVLSTQG-------- 135

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              I     +       P  L   L   S+     + +     G         +   G  
Sbjct: 136 --NILKTQANYNNEIGVPKTL---LELDSNHDYAVIEMAMRGSGQIALLTQIARPTIGVI 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+G  HI    ++ A   AK  L  + +P  S AI+  D+   + +M  A        L
Sbjct: 191 TNVGTAHIGLLGSEDAIAKAKCELLAQ-MPDTSMAILNHDN---QRLMDTAATVWQGETL 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G  G  +  K +          + V+G  F    PLPGE    N L A  +   + ID
Sbjct: 247 TFGLNGGDVQGKLIDL------FRLMVDGITFP--LPLPGEHNALNYLAALAVAKHLQID 298

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              + + L  + +  GR +     +    +   Y     ++   L  +      R I + 
Sbjct: 299 WTPLRKGLS-VQMSGGRSQRYELPNDIVILDETYNAGFEAMIAALHLLAQTPGKRHIAIL 357

Query: 389 GCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           G   +       +  ++         D   +T  +    + E I   I   +P      +
Sbjct: 358 GSMKELGDHSEQLHQQVGQKAQQLQLDAVFITLKD---REAEAITRGI-SALPSEGFAED 413

Query: 445 RIEA-IRTAIEMLNKQDVLV 463
             +A ++   E +   D L+
Sbjct: 414 --DALVQHLTEFVQPGDRLL 431


>gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium DO]
 gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
 gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
          Length = 470

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 146/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 40  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 92

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 93  KNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 146

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 147 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 199

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+  +   ++ AD+     +          V
Sbjct: 200 AITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLVQT---V 255

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 256 TTFGIGNGDVHAE--VTAKGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 311

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 312 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 370

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 371 AVLADMLELGKESLNMHAQMSEH 393


>gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli]
 gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli K-12]
          Length = 452

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 83/412 (20%), Positives = 151/412 (36%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
             A A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GAAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +       NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPERALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
 gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
          Length = 452

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 152/382 (39%), Gaps = 33/382 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + Q +   +Q  + K+N V++D+R I+ G +F A+ G + D H F+  A   GA A +V 
Sbjct: 6   VAQWTGGTLQGDDLKVNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTGGAIAALVD 65

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                 + +         + V ++R+ L   A     +     LAVTG +GK++V     
Sbjct: 66  REQDSFESA---------VRVADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVKEMAA 116

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +           G  +T  +F  D  +        A+    +   G       A +  L
Sbjct: 117 AMLGD--------GTLATHGNFNNDVGVPLTLLRLRAEHRFAVIELGANAPGEIAWTSSL 168

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   +      TN+   H++   + Q   +AK  +F    P    AII  DD+++ 
Sbjct: 169 -------TRPQVVLVTNVTGAHLEGFGSMQGIADAKAEIFGGCTP-GGQAIINNDDSFAD 220

Query: 255 EVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              ++A  AG  V+ V        G  ++ + +    ++ +  +   G+      PLPG 
Sbjct: 221 FFAEKARAAGLTVVRVSMDESTRTGADLYAENIALHRDRAEFVLQPLGEA--VTVPLPGA 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            QV NAL+A     A+G++   VL  L  L  VPGR       + G  +   Y     S+
Sbjct: 279 HQVSNALMACAAVRALGVNLPQVLPRLAALKPVPGRMHIQAAGA-GAVVDDTYNANPGSV 337

Query: 370 EMILKNIRTITSGRIIVVFGCG 391
              +  +    + +++V+   G
Sbjct: 338 RAAIDWLAAQPAPQMLVLGAMG 359


>gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 505

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 96/501 (19%), Positives = 171/501 (34%), Gaps = 56/501 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + ++   D   +     + P    E  +   V  DSR I  G +FVA+ G   DGH F  
Sbjct: 1   MIEITLADIARVTGG-QLSPGADPEATVTGYVEFDSRKITEGGLFVALPGANVDGHDFAQ 59

Query: 62  QAIAQGAEAIVVSSAYSLQ---------------DFSATIRSNTPILVVDNTRKFLSLFA 106
            AI +GA   +V+    +                D +A     +   VV    K  +  A
Sbjct: 60  SAIDRGAVGALVARDVGVPAVILPPVEQIEGDNSDLAANDPDGSARAVVAGMAKLAAHVA 119

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + L  KH   I  +TG++GK+S    +  +   +G +    G  +            T  
Sbjct: 120 TTLVDKHQLRITGITGSAGKTSTKDLIASVLADAGETVAPPGSFNNEIGLPYTVLRCTED 179

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
             +L    + +S++G+ H                      G   N+G  H+    +++  
Sbjct: 180 TDFLV---AEMSARGIGH----------IAQLTHVAPPQIGVVLNVGSAHLGEFGSRENI 226

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  L E L P +  AI+ ADD     +  R         +          + +    
Sbjct: 227 AQAKGELVEAL-PADGIAILNADDELVAGMASRTKARVVCFSTDPRSNAEYVAEGITLDD 285

Query: 287 NKQ-QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             +   T+     +       + G  QV NAL  A + +  G+D+A V   L   H +  
Sbjct: 286 VARASFTMHSPNSEPQQVRLKVFGAHQVSNALATAAVGMEAGMDAATVARALSNAHSLSV 345

Query: 345 RFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVF----GCGGDRD 395
               V T + G  +  D Y    +S+   +  +    +GR     I V       G D  
Sbjct: 346 NRMDVNTRADGVTVINDAYNANPDSMRAGIAALGYTAAGRPGVRSIAVLGEMGELGEDSV 405

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGN---RIEAIR 450
           +    +  ++A       +V  ++   E    +      GI     ++  +   R+  I 
Sbjct: 406 EAHTALGNELARYRVTHLVVVGESA--ETAALLSRAAERGIESVSALDIEDATERVSEIL 463

Query: 451 TAIEMLNKQ-------DVLVV 464
             + +  +        DV++V
Sbjct: 464 RTVPLGEENWRDRPDRDVVLV 484


>gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
 gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
          Length = 454

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 85/383 (22%), Positives = 146/383 (38%), Gaps = 25/383 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q      + VS+D+R +  G +FV + G + DGH FI QA  +GA A ++         
Sbjct: 20  LQGINIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKGASAALLEQ------- 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              I    P + V + R  L   A+    +    I+AVTG++GK++V   +  I      
Sbjct: 73  --RINDPLPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKEMIASIL----- 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G    I +   +       P+ L   L   +S     + + A+  G  ++     
Sbjct: 126 -----GWVEPILATRGNLNNDIGVPLTL---LELDTSHSFAVIEMGANRPGEIEYLSRLT 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN G  H+D     +    AK  +F+  +  E  AI+ ADD +       A  
Sbjct: 178 RPQVALITNAGPAHLDGFGDLKGVARAKGEIFQG-MGSEGVAILNADDPHFSYWRDLAGG 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +    + +  + + A     + T+           PLPG   V+NAL A+   
Sbjct: 237 LPVMGFGLSRSAE-VTARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALAASAAA 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           IA+G+D   +   L  L  +PGR +          +   Y     SL+  L+ +     G
Sbjct: 296 IALGVDRQHLSASLAALPSIPGRLQIRRGIGGMRLLDDTYNANPASLQAALELLAKF-PG 354

Query: 383 RIIVVFGCGGDRDQGKRPIMGKI 405
              +V G   +  +   P+   +
Sbjct: 355 ERALVLGDFAELGEEAAPLHQAM 377


>gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
 gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
          Length = 453

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 151/402 (37%), Gaps = 29/402 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+ VS+D+R I+   +F+A+VG + D H F  QAI  GA+A++V  A  +     
Sbjct: 19  GADSIISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAKALMVERALDV----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               +   +VV NT++ L      ++ +     +A+TG+ GK++V   V  I    G   
Sbjct: 74  ----DVAQIVVSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMVASILSAKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +         K    +   G  H+   A +  L       +K 
Sbjct: 130 Y------TAGNFNNDIGVPLTLLRSSQKDDFAVIELGANHIGEIAYTTQL-------VKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L P    A++  D    +   +   +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLAP-GKTALVNLDSHGGELWSQVLVDKH 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  SV  Q       ++      +    +     +      + G+  V NAL A+ L +
Sbjct: 236 VKTFSVNQQNADFFASQIALNQAGEASFILHTPQGEQPVTLGILGQHNVSNALAASALAM 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G     V   L +L  V GR +          I   Y  +  +++  ++ + +  SG 
Sbjct: 296 EMGASIEEVAVGLAQLSAVKGRVDVSQLTPMIRLIDDSYNASVPAMKAAIELLASF-SGC 354

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPR 421
             ++ G   +       +  ++    A    D  +   ++ R
Sbjct: 355 RWLILGNMAELGTESLALHQQVGEHAAPFQFDYVLTYGEDAR 396


>gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 415

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 158/414 (38%), Gaps = 27/414 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T S+F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TASNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVT 416
             S+   ++ +  +   R++VV      G + +     +         D  + T
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST 390


>gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
 gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
          Length = 460

 Score =  212 bits (541), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 97/456 (21%), Positives = 171/456 (37%), Gaps = 39/456 (8%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +I   Q  +  I  +S+DSR I    +F+A+ G++ D H FI     +GA A++V+    
Sbjct: 19  TITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKID 78

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           ++          P ++V +TR  +   A+ +       I+A+TG+SGK+SV      I +
Sbjct: 79  VE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILR 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G + +  G          +       P+ L +            + + A+  G   + 
Sbjct: 130 HCGETLYTHG----------NLNNDIGVPLTLFRL---TPEHRFAVIELGANHIGEIAYT 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKE 255
           +D +K  +    NL   HI+   + Q    AK  +F  L  ++  AII     D A  ++
Sbjct: 177 VDMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGL-KEQGTAIINQQSNDVALWQQ 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                       LS   Q  F +   +         T+           PLPG   + NA
Sbjct: 236 HFNSRQTQWSFSLSADTQADF-YPTDIVVNQLTTDFTLHTPEGCVAITLPLPGRHNIANA 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A+ L +++G     + + L  L  VPGR   V   +    +   Y     S+   L+ 
Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTGKIVLDDTYNANDGSMMAGLQV 354

Query: 376 IRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +   +I V       G D ++  R +         D  +      +        ++ 
Sbjct: 355 LSQLPGYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGHYSQF------ISQE 408

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             G   F  K +    +   I +L + DV+ V  KG
Sbjct: 409 NEGGEHFSFKADL---LTQLIPLLQQHDVVSVLVKG 441


>gi|238060252|ref|ZP_04604961.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC
           39149]
 gi|237882063|gb|EEP70891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC
           39149]
          Length = 331

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 109/328 (33%), Positives = 158/328 (48%), Gaps = 15/328 (4%)

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+    +GVT + +E SSH L   R+ G++   G +TN G DH+D+H     YF AK +
Sbjct: 1   MLAAARERGVTALVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHADSADYFAAKAQ 60

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF+    + +  ++  DD   + +   A  +     + G      +   V      Q+ T
Sbjct: 61  LFDG---RCAVEVLNHDDPALRPLFTPATVSY---SAAGDPTATWYATDVDGEGYAQRFT 114

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               G         LPG   V NAL+A    +  G+D+      +     VPGR E V  
Sbjct: 115 AHGPGGLTVPAGVALPGRHNVANALLAIAALVGAGVDAPTAAAGVAACGGVPGRLELVSA 174

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                R  VDYAH ++++   L  +R +++GR+I V G GGDRD+GKRP MG  A   AD
Sbjct: 175 AG-PVRGVVDYAHKTDAIVAALAALRELSAGRLICVIGAGGDRDRGKRPEMGAAAARGAD 233

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + +VTDDNPR+E+P  IRAE++ G          +E G R  AI  A+ +    DV+ V 
Sbjct: 234 VVLVTDDNPRTEEPAAIRAEVLVGAYAAATPARIVEVGGRRAAIDEAVRLAAPGDVIAVL 293

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHE    V  GE     D   + + L
Sbjct: 294 GKGHERGQEV-GGEVLPFDDRTELADAL 320


>gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 466

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 143/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+   AII   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQ-GVAIIPQQDDFTAEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +++S G  G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 H--QIMSFG-AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ L +     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLAQAQGAKGRLNFIQKAPHLF-IDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
          Length = 453

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 179/466 (38%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +        ++     T  +F                 L   S+  V  
Sbjct: 118 GKTSTKDLVAAVLS------YKYKVFKTKGNF-------NNEIGLPLMILELDSTYDVAI 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G  +   +      G  TN+G  HI+  +T++    AKM +        +  
Sbjct: 165 LEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   DD      +     A  +++  G    F I  K +       + T+    K+ +F 
Sbjct: 225 VCGNDD-----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             +PGE  + N ++   +   +G+    +   L+ +     R E +     G  I  D Y
Sbjct: 280 LDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELI--KKDGFSILNDCY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA-LDLADIAIVTDD 418
             +  +++  +  ++ I   R I V G       + +     +GK A  +  +  +   D
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E I+     G   +    N+ E I+  + ++   D+++V
Sbjct: 398 FS-----ENIKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435


>gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 471

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 174/448 (38%), Gaps = 37/448 (8%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           ++DSR ++ G +F+A+ G K DGH +I +A+  GA  ++       ++    +   + I+
Sbjct: 27  TADSRQVKGGEMFIALAGEKTDGHKYIARALQSGAAIVLAEEKRLRREGVPVLPEKSSII 86

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V+++ K L   A+    +    ++ VTG++GK++    V  +           G  +T 
Sbjct: 87  AVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGKTTTKDMVAAVLGTKFRVHKNAGNLNTE 146

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                                       V  + +     G  +   +     A   TN+G
Sbjct: 147 IGLPMTVLGAPSDT-------------EVMVLEMGMRGLGQIKTLCEISCPCAAVITNIG 193

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             H++   +++    AK  + E L P+E  AI+  +D  S   M++A +   + L  G +
Sbjct: 194 ATHLELLGSRENIARAKWEIVESL-PEEGIAILNTEDKIS---MEKAASYHGKTLFYGIE 249

Query: 274 GKF-----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           GKF        + + +           + ++     PLPG+  V +AL A G  +  G++
Sbjct: 250 GKFGRPDLWAEEIIPSGDTGTTFRARYKKENVLIRLPLPGKHNVLDALAALGAGLLNGVN 309

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                + LE L +   R E +    +   I   Y     S++  L  ++     + + V 
Sbjct: 310 LESGSQALEGLQISAMRLEILPGCHQSIIINDVYNANPASVKASLAVLKERGGAKTVAVL 369

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEK 442
           G   +     +    ++ ++ A + ++           K+  EI  G      +P  I  
Sbjct: 370 GEMYELGAASQSGHREVGVEAAGLGVLELV-----TVGKLAEEIAAGALQNGFLPSRIHI 424

Query: 443 -GNRIEAI---RTAIEMLNKQDVLVVAG 466
             +  EA+   +  I++L     +++ G
Sbjct: 425 CEDCAEAVTATKKIIDLLGAGTWVLIKG 452


>gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
 gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
          Length = 461

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 77/473 (16%), Positives = 163/473 (34%), Gaps = 31/473 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ +      E ++   +   Q  E  ++ V +DSR I  G +F+ +VG + DGH +I  
Sbjct: 1   METITVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITS 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA   + +            R +   + V NT + L   A+    +     + +TG
Sbjct: 61  ALEAGAAGCLTAR------VRTDYREDKFYIQVGNTERALRDLAAWYKDRFQIPFVGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +  +         +     T  +F  +              L    +  V
Sbjct: 115 SVGKTTAKDMIAAVLS------VKYKVLKTEGNFNNNIG-------LPLTLLRLDHTHQV 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +     G   +  D ++   G  TN+G  HI+   +++  F AK  L   +  +  
Sbjct: 162 GVLEMGMDKPGEIDYLSDIVRPEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDF 300
             ++ ADD     +  +      + +  G      +  +V        +   I+    + 
Sbjct: 222 LVVLNADDPMLTTLRGK---TPVQAVFCGKAEDADYRAQVTGGDGVSHIHCHITTPKMER 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P  GE  +Y  L+AA +    G+    + + + +      R   +        +  
Sbjct: 279 DVKIPALGEHMIYPTLIAAAVGEHFGLTPDEIEDGIARFVPTRMRMNVIQREGEITILDD 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDD 418
            Y     S+   +  +    S   + + G   +       +   +   L    I  +   
Sbjct: 339 SYNANPQSMRAAISVLADTHSSWKVAILGDMFELGPYAPALHAGVGDYLGKRGIDCLVAV 398

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV-AGKGH 469
              SE   +   E   G+P      +  EA +  + +++     ++V A +G 
Sbjct: 399 GKLSEHMAQGARE--AGVPMVYSCAD-KEAAKVVLPQVVRPDSTILVKASRGM 448


>gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 467

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 100/457 (21%), Positives = 177/457 (38%), Gaps = 44/457 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  ++ +  DSR      +F+AI+G   DGH +I  A   G    +VS    + D     
Sbjct: 28  EASLSSIVIDSRQAGPDTMFIAIIGENTDGHKYIKSAYDLGCRTFMVSQELDILDQ---- 83

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-------CQR 139
              + I+ VDNT   +   A     K    ++ +TG+ GK++    V  +        + 
Sbjct: 84  LDGSSIVCVDNTELAMGQLAKYYKNKFDIPVVGITGSVGKTTTRDMVYAVVSNKFRTLKN 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
               + Q G   TI                     +  SS     + +  S  G   +  
Sbjct: 144 EKNLNNQFGVPLTI--------------------FNLDSSYECAVIEMGMSGFGEIDYLA 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D ++      +N+G  HI++  +Q+  F AKM +  +   ++S  I+  DD Y  ++   
Sbjct: 184 DIVRPDIAVISNIGTSHIEHLGSQEGIFKAKMEI-SDYFSEDSCLIVNGDDEYLSKLRAE 242

Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                  + S G   K  I LK +  + NK    + +E K+ +F  P  GE  VYNA+ A
Sbjct: 243 KDAISYSLCSFGKDWKNTIVLKSIENLDNKTNFVVKLEDKEEEFSIPTVGEHNVYNAMSA 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + + +G++   + + L        R   + T  +   I   Y  + +S+   LK +  
Sbjct: 303 ILVGLRLGMNIDEIRQGLMNFVATGDRQNIINT-GKYLVINDVYNASPDSMIASLKVLAL 361

Query: 379 ITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
               R + + G     GD ++     +G  ++  +D+ I      R      I A+  HG
Sbjct: 362 NKDRRKVAILGDCLEMGDYEEEGHRRVGLQSVRRSDVIITQGKAARF---IGIEAQ-EHG 417

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
             +        + E I     +L  QD ++V A +G 
Sbjct: 418 FDLSNIYHFDTKKELIEDLKNILEDQDAILVKASRGM 454


>gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
 gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
          Length = 466

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 144/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+   AII   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYHHILPQ-GVAIIPQQDDFTAEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +++S G  G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 H--QIMSFG-AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPHLF-IDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii L2-6]
          Length = 457

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/469 (18%), Positives = 163/469 (34%), Gaps = 37/469 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           DL+ K          + P  + + + I  V++DSR +  G IFVA  G + DGH F  +A
Sbjct: 7   DLLLK---------GLAPEGFADSQPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKA 57

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  +V++           + S        ++   + +  +   G+    ++ VTG+
Sbjct: 58  LEEGAAYVVLNHPVEGVPAERAVIS-------PDSYHAMMVMGANYRGQFHPKVVGVTGS 110

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++            G +    G                 + + L + +  +      
Sbjct: 111 VGKTTTKQMTYAAIAGFGNTIKTEG--------------NQNNELGLPRTMFRIGRDTEY 156

Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            V     SH  +  RL    +   G  T +G  HI    +Q+    AK+ +   L  + S
Sbjct: 157 AVVEMGMSHAGEIERLAKCARPDVGIITCIGVSHIGNLGSQENICKAKLEICAGL-AEGS 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFD 301
           P ++  DD + ++     H       S+G +   +    V    +    T+  +    ++
Sbjct: 216 PLVLNGDDPFLRKAALPTHVRPVW-FSLGDENADVCALDVRQEGDGMAFTLCDKNAGRYE 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   V NAL A      +G+    V+  L        R + V   S    I   
Sbjct: 275 VTIPAMGRHNVANALAAYAAATRLGLAPEGVIAGLADFEQTGMRQKIVHAGSMD-VIEDC 333

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y    +S++  L   +     R   + G   +      P   ++    A+  +       
Sbjct: 334 YNANPDSMKAALAMFKEYPCKRRFALLGDMLELGGMSAPAHEELGRQAAEAGLTALVTYG 393

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
            E     RA    G+   +   +  +A    +  +   D L+V A +G 
Sbjct: 394 PEAARTARAAKDAGLADVVHAEDYRQAADALLARMAPGDALLVKASRGM 442


>gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
 gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
          Length = 463

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 163/447 (36%), Gaps = 45/447 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+D+R I +G +FVA+ G   DGH ++  A   GA A VV  A             
Sbjct: 28  FQGVSTDTRRIASGDVFVALRGENFDGHDYLAVAEKAGAVAAVVDKADPSM--------G 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V +T   L+  A           +A+TG+SGK++V   V  I  + G +    G 
Sbjct: 80  LPQIRVSDTIDALAQLALANRNASTARFVAITGSSGKTTVREMVAAILSQVGNTLATEG- 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +       P+ L +         +  + + AS  G   H ++ ++      
Sbjct: 139 ---------NLNNHIGVPLTLFRL---SPEHQLGAIELGASGLGEIAHTVNIVRPEVVIL 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVL 268
           TN G+ H++          AK  + +   P+    ++ +DD       +RA       V 
Sbjct: 187 TNAGQAHLEGFGGYDNVVRAKGEIIDG-APETGLVVLNSDDPAFDLWRQRAGQRRVAGVS 245

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +G       + +  + +       +G   D    L GE  + NAL+A      +G 
Sbjct: 246 GRASEGADYVPNDIHSDGDVRMFCAQGPDGWSCDVRLSLQGEHNITNALLAIAAARELGA 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D+  +   L  L  V GR + +    +   I   Y     S++  L  +    +   + V
Sbjct: 306 DNEAIKAGLAALKPVKGRLQMMVLTPKLTVIDDSYNANPASMKAALDVLAARPA-SRVAV 364

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRI 446
            G   +  Q    +  +I            +  R+   E++ A +  G  G++E  G+  
Sbjct: 365 LGAMAELGQDSLALHREI-----------GEFARARGIERLIA-VGPGCEGYVEGFGDAA 412

Query: 447 E-------AIRTAIEMLNKQDVLVVAG 466
           E       A+R   E   +   ++V G
Sbjct: 413 EVCASHDDAVRRLFEGPAESQTVLVKG 439


>gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 503

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 155/406 (38%), Gaps = 28/406 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G +++A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYIALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV+NT   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVDR--------LLPALSVPQVVVENTELALARVAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   ++   + 
Sbjct: 107 TGSNGKTSVKALLLSILQEAGRVDG-----TTVYATPGNRNNEIGLPLAV---IAAPDNA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++         R+L  G Q    I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLQISADITARQLQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR       S   
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSGAV 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            I   Y     S      +      G   +V G   +       + 
Sbjct: 338 LIDDSYNANPGS-LDAAIDALAAAPGDGWLVLGDMRELGAEGVALH 382


>gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           sulfurreducens KN400]
          Length = 470

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 95/472 (20%), Positives = 172/472 (36%), Gaps = 41/472 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++     E++               + VS+DSR ++ G +F+ + G + DGH ++  
Sbjct: 5   LDDILGATGGEIVAGGETIGA-------SGVSTDSRTVEPGELFIPLRGERFDGHDYLDA 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A A+G    +V   +        + ++   +VVD+T + L   A+    +    ++AVTG
Sbjct: 58  ARARGVRLTLVERQWLA---GRQLPADVTCIVVDDTLRALGDLAACHRRRFDIPVVAVTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    +  I  R+G      G  + +              I + + L  LS    
Sbjct: 115 SNGKTTTKEMLAAILARTGEGLKTEGNLNNL--------------IGVPRMLFRLSGVHR 160

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     S   +  RL  I +   G  TN    H++   + +    AK  LF  L P  
Sbjct: 161 WAVLEIGMSEFGEIDRLAEIVRPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLEPGS 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDF 300
           S A+  ADD     + +     G + +S G +G  +  + V  +    Q+ T+ +     
Sbjct: 221 S-AVYNADDPL---IARCPSPEGVKRVSFGLRGGDVTAEDVENLGKKGQRFTLRLPNGRV 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                  G   V NAL AA     +G+    +   L +      RF        G  + +
Sbjct: 277 TVTLHAFGSHNVANALAAAAAARVLGVAPEEIARGLGEFMPYARRFNLEEV---GDVVLI 333

Query: 361 D--YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           D  Y     S+   L  +R I   GR + V G   +   G       +G++A    D   
Sbjct: 334 DDSYNANPASMAAALTTLREIKGSGRAVAVLGDMLELGIGAEEAHRQLGRLAATCVDRLY 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           V      +     +   +           +  E +          ++++V G
Sbjct: 394 VLGAMAGTVAAGALEGGLEE--RHVTIAADHGEIVADLRRTAATGEMILVKG 443


>gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 453

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 180/466 (38%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +         +     T  +F                 L   S+  V  
Sbjct: 118 GKTSTKDLVAAVLSD------KYKVFKTKGNF-------NNEIGLPLMILELDSTYDVAI 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G  +   +      G  TN+G  HI+  +T++    AKM +        +  
Sbjct: 165 LEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIAAFFDKNNTLV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   DD      +    +A  +++  G    F I  K +       + T+    K+ +F 
Sbjct: 225 VCGNDD-----FLGALPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             +PGE  + N ++   +   +G+    +   L+ +     R E +     G  I  D Y
Sbjct: 280 LDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELI--KKDGFSILNDCY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA-LDLADIAIVTDD 418
             +  +++  +  ++ I   R I V G       + +     +GK A  +  +  +   D
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E I+     G   +    N+ E I+  + ++ + D+++V
Sbjct: 398 FS-----ENIKEGYGEGCTVY---ENKEELIKDLLNIICEGDIILV 435


>gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
          Length = 453

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 179/466 (38%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +         +     T  +F                 L   S+  V  
Sbjct: 118 GKTSTKDLVAAVLSD------KYKVFKTKGNF-------NNEIGLPLMILELDSTYDVAI 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G  +   +      G  TN+G  HI+  +T++    AKM +        +  
Sbjct: 165 LEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   DD      +     A  +++  G    F I  K +       + T+    K+ +F 
Sbjct: 225 VCGNDD-----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             +PGE  + N ++   +   +G+    +   L+ +     R E +     G  I  D Y
Sbjct: 280 LDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELI--KKDGFSILNDCY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA-LDLADIAIVTDD 418
             +  +++  +  ++ I   R I V G       + +     +GK A  +  +  +   D
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E I+     G   +    N+ E I+  + ++ + D+++V
Sbjct: 398 FS-----ENIKEGYGEGCTVY---ENKEELIKDLLNIICEGDIILV 435


>gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coprococcus catus GD/7]
          Length = 456

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 85/478 (17%), Positives = 171/478 (35%), Gaps = 57/478 (11%)

Query: 3   LQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           ++++  ++       Q+        +     V  DSR I+ G+IFVA  G + DGH FIP
Sbjct: 1   MKNMTLENIAAACGGQIYYMREDLAQETAKGVVIDSRQIEPGYIFVATKGERVDGHRFIP 60

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
              A+GA A++       +D         P ++V+++   L   A+    +    ++ +T
Sbjct: 61  DVFAKGALAVICE-VLPEEDLG-------PCILVEDSFMALKQAAAFYRQQLNIRVVGIT 112

Query: 122 GTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           G+ GK+S   F+  +        + +G  + ++G   TI     D++             
Sbjct: 113 GSVGKTSTKEFIAAVLVEKYKVHKTAGNYNNEVGLPLTIFGIQDDDQ------------- 159

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                  +  + +  ++ G      +  +      TN+G+ H++    +     AK  +F
Sbjct: 160 -------IAVLEMGINTFGEMHRLSEVARPDICVMTNIGQCHLENLIDRDGILRAKSEIF 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + + P E   I+  DD     +      A      +                   +  I 
Sbjct: 213 DFMNP-EGTVIVNGDDDKLATIHDVYGKAPI-TFGMNKDNAIWADHIENRGLLGSRADIH 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +         PLPGE  +YNA+ AA + +   +    +   +  +  V GR   +    +
Sbjct: 271 MGDVLVHANIPLPGEHMIYNAMAAAAVGVQFDMTKEEITAGISHVEAVAGRSHLIEAGDK 330

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLAD 411
              I   Y     S++  +  + T    ++ +   +F  G +     R +    A    D
Sbjct: 331 -VVIDDCYNANPVSMKAAIDLLATAPGRKVAILGDMFELGENERAMHREVGQYAAEKGID 389

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-----MLNKQDVLVV 464
           + +             + +E+  G      +    E IR A+E     +L   D ++V
Sbjct: 390 LILC---------VGGLSSEMYEGAAEKGGEARHFE-IREALEAVLQDLLQPGDTVLV 437


>gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 461

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 179/448 (39%), Gaps = 32/448 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           QW +  IN +  DSR + +G +F+ + G K DGH FI  A +QGA+A + S        S
Sbjct: 20  QWSDFTINTIEFDSRQLASGSLFIPL-GGKTDGHQFIMDARSQGAKAALWSKE------S 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           +      PIL V +T K +   A     K    ++AVTG++GK++    +  +  +  ++
Sbjct: 73  SLAPEGFPILEVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNGKTTTKDMIAAVLAKKYIT 132

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  +                  L      +   G+ H         L         
Sbjct: 133 YKTQGNYNNQIGLPYTILHMPEETEML------VLEMGMDHADEIDFLSQLA-------S 179

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               + T +G  HI+   ++Q    AKM + + L+ ++   II  ++   K +     N+
Sbjct: 180 PTVAAITMIGEAHIENLGSRQEIAKAKMGITKGLV-EDGLLIIPENEPLLKPLTA---NS 235

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              + + G+  +   ++ V  +  K + T  + G    F  P+PG++ V NA +A  +  
Sbjct: 236 TQTIKTFGFTNEADFVECVQ-LEEKNKTTFKLSGYQLPFTIPVPGKYNVDNACIALIIGK 294

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL-KNIRTITS 381
              +    + + L ++H+   R E+V T + G  I  D Y     ++ ++L    +  T+
Sbjct: 295 WFQVPEKEMQQTLAEVHLTKNRTEWV-TANNGVEILSDVYNANPTAVSLVLDSFGQMFTN 353

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK---IRAEIIHGIPG 438
           GR IVV G   +     + +  ++       AI+ +      + +    I  +       
Sbjct: 354 GRRIVVLGDMLELGATSKMMHQQL-SKHLFPAIIQEVFLYGTEMKNLFLILEKTYGNHVH 412

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  K  +   I      L   D+L+V G
Sbjct: 413 YYPKMEKEHLIVYLKATLQPNDLLLVKG 440


>gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2]
          Length = 466

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 144/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGANHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+   AI+   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQ-GVAIVPQQDDFTAEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +++S G  G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 H--QIMSFG-AGGDVFATEIELLPQSVNFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPHLF-IDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 459

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 164/444 (36%), Gaps = 33/444 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ + +DSR ++AG  FVA+ G   DG  F+P A+++GA A++V                
Sbjct: 26  ISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGAAAVIVDRMQ-----PGFGPLA 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V +T K L   A     +    I+A+TG+SGK+S    V  + ++      +   
Sbjct: 81  VPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEMVGSVLRQ------KYKT 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T  +F                 L    +       +  +  G        I       
Sbjct: 135 VCTSGNFNNQIG-------LPLSLLQMDKTTEYGVFELGTNHPGEIATLSRIIAPDIVIV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H+ +  + +A    K  L    +     AI+  DD +SK +  R+     RV+ 
Sbjct: 188 TNIGSAHVGHFGSVEAIAQEKTDLLT-FVSARGFAILGTDDFWSKRLHVRSAG---RVIW 243

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           VG  Q     L ++       +  I    + F+   P        N+L AA +     + 
Sbjct: 244 VGDRQNSLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFLSSLS 303

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI--RTITSGRIIV 386
           S  +   LEK     GR         G  +   Y     S+   L+ +     +S +I+V
Sbjct: 304 SEEITRGLEKTSFPEGRLTVHPIK-NGFVLDDSYNANPQSMLSALRALVEYPFSSKKIVV 362

Query: 387 VFGCGG--DRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           +   G   D+ +     +G  A  L L+ + +V    P  ED  +        I      
Sbjct: 363 LGSMGELGDKARASHFEVGSFAGGLPLSHVIVVG---PYGEDVYEGLRSSSFPIDCIFRT 419

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +  EA     ++LN    ++V G
Sbjct: 420 ADTEEAFFCLHKLLNGNVTVLVKG 443


>gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
 gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
          Length = 453

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 170/461 (36%), Gaps = 41/461 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +     VS+D+RHI    +F+A+VG + D H F  QA+  GA A++V 
Sbjct: 9   LAQLTQGQLIGDDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A  L             +VV +T+  L    + ++ +     +A+TG+ GK++V   V 
Sbjct: 69  RALDLP---------VAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F  G  +           + P   +    L      G  H+   A +  L
Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIEL------GANHIGEIAYTTQL 173

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++       N+   H++   +      AK  +++ L      AI+  D    +
Sbjct: 174 -------VRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGL-SAGGVAIVNLDSHGGE 225

Query: 255 EVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              +   +      S    Q  F     V     K    +    +       + G+  V 
Sbjct: 226 YWTQVLADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVA 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A+ + +  G   A +   L  L  V GR +    +     I   Y  +  +++  +
Sbjct: 286 NAIAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIKLIDDSYNASVPAMKAAV 345

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIR 429
             + + T G+  +V G   +       +  ++    A    +  +   ++ R      I 
Sbjct: 346 DLLGSFT-GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTR------II 398

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAGK 467
           +++  G   F + G  IE I+    + N+ +    ++V G 
Sbjct: 399 SQLCGG-KHFSDHGELIEYIKQ--NLANENEACHTVLVKGA 436


>gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
          Length = 457

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 94/468 (20%), Positives = 186/468 (39%), Gaps = 40/468 (8%)

Query: 5   DLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L+   F E++N +     +     K   +S+D+R I    IF+A+ G+  + + +I  A
Sbjct: 2   ELLK--FEEIVNAVGGKVHINSGNHKYTNISTDTRKITKDSIFIALKGDNFNANDYIVDA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA   +V     +    + +  NT I++V+NTRK L   A     K    I+ +TG+
Sbjct: 60  SDKGANLCIVD---EINFNDSDLNENTSIILVENTRKALLDLAELYRSKLNIKIIGITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S                 +     T  +F                  S  +S  V 
Sbjct: 117 TGKTSTKDLTAAALSS------KYKVFKTQGNF-------NNEVGLPLMIFSLDNSYDVA 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+           K      TN+G  HI+  +T++    AKM +  +   K+S 
Sbjct: 164 VLEMGMSNFEEIHRLAKVAKPDIALITNIGISHIENLKTRENILKAKMEI-TDFFNKDSI 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDF 302
            I+  ++    +++K   +   +++S+G++       + +    N  + T+  E +   F
Sbjct: 223 LIVNKEN----DLLKNVKSNEYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+PG+  + N+++A     ++ I+   + + ++ L V   R + V     G  I  D 
Sbjct: 279 NIPVPGKHNILNSMLAIVAGRSLDIEYDKLKQGIKNLSVTSMRLDIV--KKDGFTIVDDS 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAI-VT 416
           Y  + +S++  +  I TI   R I + G   +          ++A     +  D  I V 
Sbjct: 337 YNASPDSMKAAIDVITTIKGNRKIAILGTMKELGDDSYKFHKEVAEYAKENNIDFLITVG 396

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + N           E  +    F E     +A       L ++D+++V
Sbjct: 397 EFNEAY-------KEGYNNNLNFKEFNTIEKAADFITSNLKEKDIILV 437


>gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter sp. PRwf-1]
 gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. PRwf-1]
          Length = 505

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 163/399 (40%), Gaps = 32/399 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +D+R I+AG IF+AIVG   DGH F+  A+ +GA A +VS   S          N 
Sbjct: 43  TRIITDTRKIEAGDIFLAIVGENFDGHSFVASAVEKGAIATIVSQPLS--------EVNV 94

Query: 91  PILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P L VD+TR      A+    +HP   ++A+TG+SGK++V   ++ I  +   +S  +  
Sbjct: 95  PQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTGSSGKTTVKEMLRHIFAQVEAASADVQS 154

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T+ ++    +N    P        L          + + A+  G   +    +K      
Sbjct: 155 TTLVTRGNLNNDFGVP-----MMLLELEQQHRYAVLELGANHVGEIAYTAAMVKPDVACI 209

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+     +      K  ++ + L + S A++  DD YS ++M  A      ++ 
Sbjct: 210 LNIGTAHLGEFGGRDNIAKTKAEIY-QPLTQASTAVVPCDDDYSDQLMSTAKQHTDTIIG 268

Query: 270 VGYQGKFIHLK----------KVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNAL 316
            G+                  K  A+ ++ Q+  ++EGK       L P+ GE  V NAL
Sbjct: 269 FGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFAIEGKAPAMVSVLLPMAGEHNVSNAL 328

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            AA    A G+ + L+ + L +     GR            I  D Y    NS+      
Sbjct: 329 AAAACAYAAGVSAELIAQGLNQAKSSKGRLGRQRLGQH--HIIDDTYNANPNSMRAAADV 386

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +     G  I+V G  G+          K+   +A+ A+
Sbjct: 387 LAA-QEGTRILVLGDIGELGDDAVSEHYKLGEAIANKAV 424


>gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
 gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
          Length = 466

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 144/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+   AI+   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQ-GVAIVPQQDDFTAEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +++S G  G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 H--QIMSFG-AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFLQKAPHLF-IDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 459

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/446 (20%), Positives = 179/446 (40%), Gaps = 33/446 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +   N VS D+R ++ G I++AI G   DG+ F+ +AI +GAE  ++     +   
Sbjct: 19  INGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGAELCIIDK---IAYT 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            A + + + I++V+NT+K L   A     K    ++ VTG++GK+S    +         
Sbjct: 76  EAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKDLIAAALSE--- 132

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              ++    T  +F                  +  ++  V  + +  S     Q   D  
Sbjct: 133 ---KLKVFKTKGNF-------NNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVA 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G  TN+G  HI+  +T++    AKM +      KE+  I+  DD Y   + K  + 
Sbjct: 183 RPDLGVITNIGISHIENLKTRENILKAKMEITTYF-GKENLLIVNHDDQYLSTIDKAEYR 241

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +S     K I LK    +  +      +    F    P+PG+  + NAL+A    
Sbjct: 242 LIKASIS---DDKNIDLKGESLVLKEDSCEFKLNESKFY--IPMPGKHNISNALLAIACA 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
             +G++  L+ +    +     R +     ++G  I  D Y  + +S++  ++ ++ +  
Sbjct: 297 RELGVEDQLINKGFLNIEATSMRLDI--EKNKGITIINDTYNASPDSMKAAIEVMKNLKG 354

Query: 382 GRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R I V G      +        MG  A + +   ++        +  K  +E  +    
Sbjct: 355 KRRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILI-----AIGEFAKAYSEGFNNKNS 409

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            IE   +  AI      + ++D+++V
Sbjct: 410 SIELAEKEGAIAYLTSEIREEDIILV 435


>gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella longbeachae NSW150]
 gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella longbeachae NSW150]
          Length = 441

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 136/388 (35%), Gaps = 36/388 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  +  DSR +++G +F+AI G + DGH FI +A A+GA A VVS             
Sbjct: 18  TELTGICIDSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVSHRVEGVH------ 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-----QRSGL 142
              P  VV +  + L+  A+         ++A+TG++GK++    +  I         G 
Sbjct: 72  --IPQFVVPDPIQALAKIAAAHRQNIHCPVIALTGSNGKTTTKEMIAAILPSPSHSTKGN 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  IG   ++                        S        + A+  G   H +  +
Sbjct: 130 LNNHIGAPLSV--------------------FQLNSQHRYAVFELGANHPGEIAHTVAIV 169

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H++   +      AK  +  + L     AI+  DDAY+    +   +
Sbjct: 170 HPDVTLINNIAPAHVEGFGSIDGVARAKGEI-HQGLSSAGTAIVNDDDAYAHFWDELLLD 228

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 S+ +                   ++ V     D    +PG   V NAL AA  C
Sbjct: 229 KKVLRFSIEHPADVYAQDVQLDSQGCGHFSLIVPNGRADIHLKVPGLHNVRNALAAAACC 288

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            AIG+ +  + + L     V GR   +   ++   I   Y     S+ + L+ +      
Sbjct: 289 HAIGLSAKEIQQGLNLFSGVKGRLTVLTGKNQSTVIDDTYNANLRSVLVALEVLAEHPGK 348

Query: 383 RIIVVFGCGG--DRDQGKRPIMGKIALD 408
           +I V    G            +G  A  
Sbjct: 349 KIFVFGDMGELGVWATQHHQEVGIAARR 376


>gi|224373699|ref|YP_002608071.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nautilia profundicola AmH]
 gi|223588723|gb|ACM92459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nautilia profundicola AmH]
          Length = 410

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 179/381 (46%), Gaps = 37/381 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + +TGT+GK++ A  +  + Q++G S    G      +  +    T  +P  +   + 
Sbjct: 56  KFIGITGTNGKTTTAFVLGHLLQQAGYSVGIQGTEGFYLNGEKIEAKTLTTPP-IFTTIK 114

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +E SSH + Q R++GI+  A   T+  +DH+DYH+T + Y   K   F 
Sbjct: 115 RAVKYEPDFYIMEVSSHAIVQQRIEGIEFTAKILTSFSQDHLDYHKTMEEYKRVKESFFR 174

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +    E+  +        K ++K   N  C+V S GY+                   + V
Sbjct: 175 D----ETVKVFN-----GKLLVK---NEKCKVKSGGYEFNLNCKN------------LYV 210

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K      P+ GEF   N  +A      +  +S+L   +      VPGR E V   S+ 
Sbjct: 211 LEKPIVDDIPMAGEFNKMNFSLALKTASLL-TNSSLSTFNFSLFEGVPGRMEIV---SKK 266

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +D+AHT + +E +L  +     G+ IVVFG GGDRD+ KR +MG++A   A+  I+
Sbjct: 267 PLVIIDFAHTPDGMEKVLSAVE----GKKIVVFGAGGDRDKDKRHLMGEVADKYAEYIII 322

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETV 472
           T+DNPR ED  +I  EI  GI    +    NR +AI+ A+++  K++  L++ GKG E  
Sbjct: 323 TEDNPRCEDSNEICKEIAKGIKSIPYKIISNRKDAIKEAVDIAKKKNYTLMLLGKGDENY 382

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
               + +   S D + ++++L
Sbjct: 383 IQYCDKKIDYS-DRETVKKLL 402


>gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
 gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
          Length = 453

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 169/461 (36%), Gaps = 41/461 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +     VS+D+RHI    +F+A+VG + D H F  QA+  GA A++V 
Sbjct: 9   LAQLTQGQLIGDDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A  L             +VV +T+  L    + ++ +     +A+TG+ GK++V   V 
Sbjct: 69  RALDLP---------VAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F  G  +           + P   +    L      G  H+   A +  L
Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIEL------GANHIGEIAYTTQL 173

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++       N+   H++   +      AK  +++ L      AI+  D    +
Sbjct: 174 -------VRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGL-SAGGVAIVNLDSHGGE 225

Query: 255 EVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              +   +      S    Q  F     V     K    +    +       + G+  V 
Sbjct: 226 YWTQVLADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPVSLGIIGQHNVA 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A+ + +  G   A +   L  L  V GR +    +     I   Y  +  +++  +
Sbjct: 286 NAIAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIKLIDDSYNASVPAMKAAV 345

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIR 429
             + + T G+  +V G   +       +  ++    A    +  +   ++ R      I 
Sbjct: 346 DLLGSFT-GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTR------II 398

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAGK 467
           +++  G   F   G  IE I+    + N+ +    ++V G 
Sbjct: 399 SQLCGG-KHFSNHGELIEYIKQ--NLANENEACHTVLVKGA 436


>gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
 gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
          Length = 378

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 151/389 (38%), Gaps = 38/389 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+    IN V+ DSR+I+   +F+   G   DGH F+ QA+  GA A        L +  
Sbjct: 20  QYLSHSINGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELNEDI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                  PI+ V++T K L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  EG-----PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLTTEFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGMPLTI--------------------LDLDEDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    +++    AK  +   L  +    I   D+   K  
Sbjct: 175 LLSSIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL-KENGTFIYDGDEPLLKSH 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +++ + A  R++SVG  G    L         + +  ++  K+  F  P+ G   + NA 
Sbjct: 234 LEQLNKA--RLISVGL-GNSNTLVCHVDDIETEGIAFTINDKE-SFTLPILGTHNMKNAT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+    + +++  + +   R E   T +    I   Y  +  S++  +  +
Sbjct: 290 IAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDTL 349

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            ++  GR I++     +  +  + +  ++
Sbjct: 350 SSM-EGRKILILADVLELGENSQSMHEEV 377


>gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB900]
          Length = 466

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 144/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNNDLGVPMM-------------LLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+   AI+   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQ-GVAIVPQQDDFTAEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +++S G  G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 H--QIMSFG-AGGDVFATEIELLPQSANFQLHTPQGSSLVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPHLF-IDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
           +++V+   G   D        +   +A    D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
 gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
          Length = 463

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/470 (16%), Positives = 149/470 (31%), Gaps = 26/470 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ +  +D    +    +      + +I+ V +DSR I  G +FV ++G + DGH +I  
Sbjct: 1   MEPITIRDILTAVKGRILGDFDNLDLEISRVETDSRTIHEGSLFVPLIGEQFDGHAYITS 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A              +       + VD+T++ L   A     K    ++AVTG
Sbjct: 61  ALEGGAAACFTQRDRE------SYLPGKCYIRVDHTQRALRDLAVWYKKKFDIPVVAVTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    V  +               T  +   D                 +   G+
Sbjct: 115 SVGKTTTKDMVAAVLGE------HYKVLKTEGNLNTDIGTCRTLFRLDKSYQIAVLEMGM 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            H         + Q             TN+G  HI++  +++    AK  +F    P   
Sbjct: 169 NHPGEIEVMSAIAQ-------PDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKP-GC 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD 301
            A++  DD   + +  +           G  G       + +         +        
Sbjct: 221 LAVLNGDDPLLRTLEGKLPEPILWCG--GAPGLDYTADHLVSDGTSNVCCEVKTPHTSCQ 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G   +Y  L+AA +    G+ +      +        R   +        +   
Sbjct: 279 VEIPALGSHMIYPTLMAAAVAEHFGVTAEEFRRGVLHFAPTKMRMNIIQRGEDITILNDT 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y     S+   ++ +    SGR I V G   +       +   I   L    I       
Sbjct: 339 YNANPQSMRAAVEVLSKTHSGRKIAVLGDMFELGTLAPALHAGIGTYLGKAGIDCLV-AV 397

Query: 422 SEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
            E  + I  A     +P       + EA+    +++     ++V A +G 
Sbjct: 398 GELAKNIYDAAREAMVPEVHYCATKEEALPVLAQVVKPHATILVKASRGM 447


>gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
 gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
          Length = 476

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 135/380 (35%), Gaps = 24/380 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR    G +FVA+ G + DGH F+ +  A GA   VVS  + ++  +     +   
Sbjct: 34  VVIDSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRF 93

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV D+  K     A+    +    ++ + G++GK++    +  +   S       G    
Sbjct: 94  LVADDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLSTSFNVLVTQG---- 149

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L       V  + +  +  G  +      K   G  TN+
Sbjct: 150 ------NYNNHLGVPLTL---LQMRRDTEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNI 200

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G +H+++  +     +A+  LF  L      A +  DD      +  A  +  R    G 
Sbjct: 201 GHEHLEFFGSLDGVADAEAALFRYLEAHGGTAFVNLDDHR----LAAAGASLSRKTGYGA 256

Query: 273 Q---GKFIHLKKVCAIHNKQ-QVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           Q   G+    +++ A    +   T+  E G          G   V NA+ A+ +    G+
Sbjct: 257 QPGAGRAWWAEQIGADRVGRVSFTLCSESGVHQPVAMQFVGRHNVINAVAASAVGAHFGL 316

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRII 385
             A + E L  L    G          G  +  D Y    +S+ + L  +  I   GR I
Sbjct: 317 APAHIAEGLGTLLPAKGWKRMELFEDGGIVVLNDTYNANPDSVRLALDTLAAIECRGRRI 376

Query: 386 VVFGCGGDRDQGKRPIMGKI 405
            V G   +           I
Sbjct: 377 AVLGDMLELGDNSAIEHESI 396


>gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
 gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
          Length = 470

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 156/446 (34%), Gaps = 38/446 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR    G +FVA+ G++ DGH F   A+  GA A++ S              +  +
Sbjct: 31  VVIDSREAAPGSLFVALRGSRVDGHDFAEAAVRAGATAVLCSRPVDAPHLLVDGGDDAVV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             +    + +      +      +I+ VTG+SGK++    + Q  QR G +    G  + 
Sbjct: 91  AALAKLARAV------VAELPDADIIGVTGSSGKTTTKDLLAQTLQRIGPTVAPPGSFNN 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                        +  ++              + V A   G   H         G   N+
Sbjct: 145 EIGHPLTVLRADQTTRFI-------------ALEVAARGVGHIAHLCQIAPPRIGVVLNV 191

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           G  H+    ++     AK  L E L    +   A++ ADD     V+  A     RV+S 
Sbjct: 192 GSAHMGEFGSRDTIAQAKGELVEALPAAAQGGVAVLNADDD---AVIGMASRTAARVVSY 248

Query: 271 GYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G         +  A+  +   + T+++          L G  QV+NAL  A +   +G  
Sbjct: 249 GLAPDADVRAEGIALDERGRPRFTLAIGEDTAPVSLRLVGTHQVHNALAVAAVLRELGEP 308

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-IV 386
              +   L +   V      V     G  I  D Y     S+   L+ + T+ SGR    
Sbjct: 309 VTAIAAALSEAGPVSRWRMEVTERPDGVTIVNDAYNANPESMSAALRTLATLASGRRAFA 368

Query: 387 VFGCGGDRDQGKRPIM---GKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFI 440
           V G   +     R      G++  +     ++T      E    I    A +       +
Sbjct: 369 VLGHMAELGSAHRTEHERIGRLVTESGVDVLIT----VGEQAASIADGAASVADWKGETV 424

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +  EA+    E L  +D++++ G
Sbjct: 425 TVADVTEAVAVLKERLRPKDIVMLKG 450


>gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR
           15-3]
          Length = 473

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 176/469 (37%), Gaps = 39/469 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI+ +  F +       + +S DSR +  G +F  I G   DGH F   A AQGA 
Sbjct: 6   DKQALISAMDGFTVGCLPEVFSGISIDSRTLVEGDVFFCIKGRHLDGHDFATHAYAQGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV    +        ++  P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLVV----AQNRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q  + +G     +               +  +   +   L+ +       +    
Sbjct: 122 KEALKQALETAGKVHANL--------------SSLNNCWGVPLTLARMPIDSDYGIFEIG 167

Query: 190 SSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H    +  +  +       T +   H+++ +  +   +AK  +FE L  K   A++ A
Sbjct: 168 MNHKDEIRPLVKLVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEGL-DKNGIALLNA 226

Query: 249 DDAYSKEVMKRAHNAGC-RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD +   ++K+A   G   + S G         K+VC + N   + + +  KD       
Sbjct: 227 DDHFFSYLLKKAKQCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY----VDY 362
           PG+  V N L     C A+G + A V+  L +  +  GR      +   G ++      Y
Sbjct: 287 PGQHMVQNGLSVLAACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDESY 346

Query: 363 AHTSNSLEMI---LKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
                S+      L        GR I +       G   ++  R ++  I +  AD+  +
Sbjct: 347 NANPASMRAALDLLATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFL 406

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                R      + +++   I  +    +  E        ++  D++++
Sbjct: 407 VGKEMR-----VLASDLSPHITVY-HAQDIEEIFPLVFSEISNGDLIMI 449


>gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
 gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
          Length = 452

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 147/416 (35%), Gaps = 38/416 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L D++  +             Q  +  ++ V++D+R +  G +FVA+ G + D H F  
Sbjct: 8   QLTDILNGEL------------QGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAD 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA A GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+T
Sbjct: 56  QAKAGGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALT 106

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK+SV      I  + G + +  G  +                      L       
Sbjct: 107 GSSGKTSVKEXTAAILSQCGNTLYTAGNLNN-------------DIGVPXTLLRLTPEYD 153

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + A+  G     +   +  A    NL   H++   +      AK  +F  L P+ 
Sbjct: 154 YAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PEN 212

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI  AD+           +      S            +    +  + T+       D
Sbjct: 213 GIAIXNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVD 272

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L PLPG   + NAL AA L  ++G     +   L  L  VPGR   +        +   
Sbjct: 273 VLLPLPGRHNIANALAAAALSXSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDS 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           Y     S    ++ +      R++VV      G + +     +         D  +
Sbjct: 333 YNANVGSXTAAVQVLAEXPGYRVLVVGDXAELGAESEACHVQVGEAAKAAGIDRVL 388


>gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 452

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 171/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSCPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY------TAGNFNNDIGVPI-------TLLRLNHDYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRLVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAG 466
               K+   I H         ++   I     +L +Q    ++V G
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 433


>gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 473

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 93/447 (20%), Positives = 152/447 (34%), Gaps = 37/447 (8%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN---- 89
           + DSR I  G IF A+ G   DGH F+  A   GA   VVS+ +      A   ++    
Sbjct: 32  AIDSRKISGGEIFFALKGEHTDGHAFVQTAFENGAALAVVSTEWFENTRQAQPNAHFFTE 91

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              L V +    L   A+R   K P  I+ + G++GK++       +           G 
Sbjct: 92  NLFLSVQDPLVALQKLANRYRKKFPIPIVTIAGSNGKTTTKEMTAAVL----------GT 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T  + +   +       P+ L +         +  V +  + HG         +   G  
Sbjct: 142 TFRVVATEGNFNNHIGVPLTLFRLRD---DTEIAVVEMGINHHGEMNELCQIAEPTHGLI 198

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G +H ++  T +    A+  L+  L        + ADD  + +     +      + 
Sbjct: 199 TNIGHEHCEFLGTPEEIAMAEGELYRYLSRTGGSGFVNADDGLASQTAGELNLQTLYGIE 258

Query: 270 VGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G  I  K+V           I    +       + G   VYNAL AA + +  G  
Sbjct: 259 QPNLGLNIWAKEVQLNQQGCASFKICTPKQALTLNLQISGRHNVYNALAAAAIGLNFGAK 318

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT-ITSGRIIV 386
              V   LE      G        + G  I  D Y     S+   L  + + I  G+ IV
Sbjct: 319 LESVKLALEHFVPKSGSKRMERICAAGLTILNDSYNANPESMRSALGTLASLICDGKKIV 378

Query: 387 ----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS---EDPEKIRAEIIHGIPGF 439
               +   G   +   R +   I     D+     +  +    E P K       G   F
Sbjct: 379 LLGDMLELGSVSETEHRKLGEFIEAAGIDLFFGFGNAMKWTCQEAPNK-----CKG--HF 431

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             K   ++A++   E+    D L+  G
Sbjct: 432 NTKSEMVQALK---EVAAPGDALLFKG 455


>gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
 gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
          Length = 453

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 180/470 (38%), Gaps = 44/470 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           + LQ+++      L+ +  +       ++I  VS+D+R I+ G +F+A+ G   +G+ ++
Sbjct: 4   LNLQEIVKATKGALLKEAYV-------KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  +GA+  +V     ++     ++ +  ++ V NTR+ L   A     K    ++ +
Sbjct: 57  LEAFNKGAKIAIVD---EVKCDLNELKEDVALIKVQNTRRALMDLAKFYREKLGLKVVGI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    V  +         +     T  +F                 L   S+ 
Sbjct: 114 TGSAGKTSTKDLVAAVLSD------KYKVFKTKGNF-------NNEIGLPLMILELDSTY 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +     G  +   +      G  TN+G  HI+  +T++    AKM +       
Sbjct: 161 DVAILEMGMRGLGQIKELAEIASPDFGIITNIGISHIEILKTRENILKAKMEIATFFDKN 220

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKD 299
            +  +   DD      +    NA  +++  G    F I  K +       + T+    K+
Sbjct: 221 NTLVVCGNDD-----FLGALPNAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKE 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +F   +PGE  + N ++   +   +G+    +   L+ +     R E +     G  I 
Sbjct: 276 EEFSLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELI--KKDGFSIL 333

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAI 414
            D Y  +  +++  +  ++ I   R I V G   +          +I      +  +  +
Sbjct: 334 NDCYNSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYSKENGIEKVL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              D  +      I+     G   +    N+ E I+  + ++   D+++V
Sbjct: 394 CFGDFSK-----NIKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435


>gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
 gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
          Length = 455

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 183/466 (39%), Gaps = 38/466 (8%)

Query: 5   DLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L+   F E++  +     +     K N VS+D+R I    IF+A+ G+  + + +I +A
Sbjct: 2   ELLK--FEEIVEAIHGKIHINSNCHKYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA   +V     ++     ++ NT +++V NTRK L   A     K    ++ +TG+
Sbjct: 60  SKKGANLCIVD---EIKFNENDLQKNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S                 +     T  +F                  +  ++  + 
Sbjct: 117 TGKTSTKDLTAAALSS------KFKVFKTQGNF-------NNEIGLPLMIFNLDNTYDIA 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S            +      TN+G  HI+  +T++    AKM +  +   ++S 
Sbjct: 164 VLEMGMSDFSEIHRLAKVARPDIALITNIGISHIENLKTRENILKAKMEI-TDFFNEDSI 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            I+  ++    +++K   +   +V+S+G+ +G       +    N  + T+    K+  F
Sbjct: 223 LIVNNEN----DLLKDISSDDYKVISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+PG+  + N+L+A      + I+   + E ++ L V   R + V    +   I  D 
Sbjct: 279 NIPVPGKHNILNSLLAIAAGRVLNIEYDKLKEGIKNLSVTSMRLDIV--KGKKFTIVDDC 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI---VTDD 418
           Y  + +S++  +  + TIT  R I V G   +          ++A       I   +T  
Sbjct: 337 YNASPDSMKAAIDVMNTITGKRKIAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLIT-- 394

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  E  +         F    +   A       +NK D+++V
Sbjct: 395 --VGEFNEAYKEGFNKNSKQFETIED---AAEFTTNNINKDDIILV 435


>gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 459

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 163/407 (40%), Gaps = 29/407 (7%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I ++  ++   L  S+    +++ KI+ VS+DSR IQ   +++ +VG   DG LF+ + 
Sbjct: 1   MIERNLGQIAEMLGGSLCDPNYKDVKISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA A ++   Y +++  +      P + VD+T K L   A     +    ++ +TG+
Sbjct: 61  EDKGASAFLIDRDYEIKNNIS-----IPYIRVDDTLKALQDLARSYRKELNVKVIGITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    + ++         +     TI +   +  +           LS      + 
Sbjct: 116 NGKTTTKDLLYEVLST------KYKTQKTIGNLNNEIGVP-------KTILSLNEDTEIA 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G      +         TN+G  H+   ++++    AKM + E L   +  
Sbjct: 163 VVELGTDKFGDISLTSNIALPDIAIITNIGDSHLHNLKSKEGILKAKMEIVEGL-SDDGI 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I   DD   K+ +  ++    +++S G +     + K        +V+ S +G+ +D  
Sbjct: 222 FIYNGDDETMKKEID-SYKVDQKIISFGLEDDNDFVVKEIPSTPA-KVSFSHDGETYD-- 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            PL G   +YN      +   +G+D+  V   L K+     R   +     G  +  D Y
Sbjct: 278 IPLLGRHNIYNGACCLLIANILGLDTNEVKSGLVKVRPANNRSSMIEL--DGFDVLDDSY 335

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALD 408
                SL   L   + +      IVV G   +    +  +  ++ LD
Sbjct: 336 KSNPQSLRSGLATCKLLDGYNNKIVVLGDMLELGDKEDELHYEVGLD 382


>gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
 gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
          Length = 486

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 93/452 (20%), Positives = 160/452 (35%), Gaps = 41/452 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I+ G  F AI G++ DGH +   A+A GA  IV+S A       A  R  
Sbjct: 26  ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLAMANGAAMIVISEAR----LPAMGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VVD+    L         +    I+AVTG+ GK++    +++    SG     +  
Sbjct: 82  VPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKTTTKEMLRRTLSPSGKVHASV-- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAGS 208
                        +  +   +   L+ +       V     +H  +   L   ++     
Sbjct: 140 ------------ASFNNHWGVPLTLARMPEDTDFGVFEIGMNHPEEIRPLAKMVEPHVAI 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267
            T +   H+   ++      AK  +F+ + P     I+  D+   + + + A  AG   V
Sbjct: 188 ITTIAPAHLGNFKSITEIAAAKAEIFDGVAP-GGHVILNRDNDQFEFLERAALAAGVEHV 246

Query: 268 LSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S G   K  + L +  A      + +++ G+  +     PG     NAL   G  + + 
Sbjct: 247 HSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVLGTVMLVD 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILK--------N 375
            D    ++ L  L    GR +        G    +D  Y     S+   +          
Sbjct: 307 ADLDKAIDALATLQAEKGRGQRHKRVVGNGYFTLIDESYNANPASMRAAIALLATSSPDA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                +GR I V G   +     + +   +A  L    I   +      PE   A +   
Sbjct: 367 NVGSRAGRRIAVLGDMLEMGDYAQRVHANLAGPLLAAGI---EYVWLAGPE--MAALRDA 421

Query: 436 IPGFIEKGNR---IEAIRTAIEMLNKQDVLVV 464
           +P  +    R    E     +  +   DVL+V
Sbjct: 422 LPESVYVEYRENTEELAEFVLNSVAPGDVLMV 453


>gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
 gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
          Length = 450

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 146/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 20  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 73  KNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 127 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+  +   ++ AD+     +          V
Sbjct: 180 AITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLVQT---V 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 236 TTFGIGNGDVHAE--VTAKGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 292 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 351 AVLADMLELGKESLNMHAQMSEH 373


>gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 453

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 175/466 (37%), Gaps = 38/466 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           DL   +  + I+   +  ++  E    ++S+D+R I    +F+A+ GN  +G+ ++ +AI
Sbjct: 2   DLTLNEVLKAIDGELL--IKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAI 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA   ++     +      +     ++ V++++  L   A     K    ++ +TG++
Sbjct: 60  KAGATVAIID---EVNFKLEELNGKGTVIKVNDSKTALGALAKYYREKLGIKVVGITGST 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V            +     T  +F                     SS  +  
Sbjct: 117 GKTSTKDLVAAFLS------GKYSVFKTKGNF-------NNEIGLPLMIFELDSSYDIAV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  ++        +  +      TN+G  HI+Y +T++     K  + +      +  
Sbjct: 164 LEMGTNNFNEIHRLANIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLV 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISVEGKDFDF 302
           + Y +D     + K   +   ++  +GY  K+  + + +           ++  G+   F
Sbjct: 224 VNYENDM----LQKVNESNEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRF 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + GE  + NAL+   +    GI    +   L        R EF+  N     I   Y
Sbjct: 280 KLNMVGEHNILNALLGIRISENFGITFEEMELGLNNFEATSMRLEFIKKN-NFTIINDCY 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             + +S++  L  ++T +  R I V G     G+  +    ++G+ A+  ADI + T + 
Sbjct: 339 NASPDSMKSALSVLKTYSGSRKIAVLGDMGELGEHAKSSHEMVGQDAIGKADIVLTTGEF 398

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVV 464
                    R +   G        N  E ++     ++   DV++V
Sbjct: 399 ---------REDYKSGFGKDTVTFNCKEELKNYLCNLIKDGDVILV 435


>gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 457

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 164/473 (34%), Gaps = 46/473 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  ++                  +++ V+ DSR ++  ++FVAI G + DGH FIPQ
Sbjct: 1   MKNMSLQEIATACGGTYFGDSTKLSLEVSGVAIDSRKVEKDFLFVAIKGARVDGHDFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA   +         +S         ++V +  + L   A          ++ +TG
Sbjct: 61  VMENGALCALSEKDLGDVPYS--------YILVKSCEQALKDLAEYYRLALDIKVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  + ++      +     T  +F         + I L   +  +  +  
Sbjct: 113 SVGKTSTKEMIASVLEQ------KYSVLKTEGNF--------NNEIGLPLTIFNIREEHE 158

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     +   + HRL  + +      TN+G  H++    +     AK  +F+  +   
Sbjct: 159 VAVLEMGINEFEEMHRLAKVARPDICVITNIGFCHLENLIDRDGVLRAKTEMFD-FMRDG 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +  I+  DD     V +           +  +  +                + +     +
Sbjct: 218 AQIILNGDDDKLITV-QNVKGIIPVFFGLTERHDYYATDVHSLGLKGTSCILHLPNGTVN 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG   VYNAL  A +  ++G+ +  + + +E L  V GR   + T+     I  D
Sbjct: 277 ANIHLPGAHMVYNALAGACVGYSLGLTNEEIQKGIESLLPVSGRNNLIETDD--FLIIDD 334

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG---KIALDLADIAIVTD 417
            Y     S++  L  +      ++ ++   G   +  K    G     A    D+     
Sbjct: 335 CYNANPVSMKASLDVLSNALGRKVAILGDMGELGEDEKALHYGVGVYAAKKETDLICC-- 392

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVV 464
                     +  E ++G      K        + E +     ++ K D ++V
Sbjct: 393 -------IGTLAQEFVNGANSVTSKSETLYFATKEEFLSQMHSIVKKGDTILV 438


>gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
 gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
          Length = 450

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 146/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 20  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 73  KNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 127 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+  +   ++ AD+     +          V
Sbjct: 180 AITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLVQT---V 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 236 TTFGIGNGDVHAE--VTAKGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 292 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 351 AVLADMLELGKESLNMHAQMSEH 373


>gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
 gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
          Length = 457

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/489 (19%), Positives = 185/489 (37%), Gaps = 52/489 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  +    +         R++  V  DSR +Q  ++FVAI G   + H FIP 
Sbjct: 1   MKNLTLENITKACKGVYHGDESKLGREVGGVVIDSRKVQKDYLFVAIDGENVNAHQFIPD 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            I +GA  ++        DFS         ++V++T + L   A          ++ +TG
Sbjct: 61  TIEKGALCVISHEDLGDTDFS--------YILVESTGQALLDIAKLYRDSFDVKVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     TI +F         +   L   +  L+    
Sbjct: 113 SVGKTSTKEMIASVVAQ------KYKVHKTIGNF--------NNEWGLPLTIFELNEDHQ 158

Query: 183 THVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +     +H  +  RL  +        TN+G  H+++ +T++     K ++ ++ +   
Sbjct: 159 VAILEMGVNHFGEMRRLSSVASPDICVITNIGVAHLEFFKTREGILQEKSKMIQD-MKDG 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DF 300
              I   DD    +       A   +  +G   +F               TI +  +  F
Sbjct: 218 GTIIFNGDDDLLSQ-AGPIKGATPILFGLGDNCQFYADNIQPMGLRGTSCTIHLPDEYSF 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + + PLPG   + NAL  A +   + + S  +   +E L  +PGR   + T+     I +
Sbjct: 277 ECVVPLPGTHMISNALAGAAVGYTLHLTSEEIKAGIEGLPSIPGRNNIIKTDR---LIIL 333

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTD 417
           D  + +N + M    ++  +  GR + V G  G+    ++ +  ++    A   I  V  
Sbjct: 334 DDCYNANPVSMKAAIDVLDMAIGRKVAVLGNMGELGNNEKVLHREVGEYAAAHGIDLVCG 393

Query: 418 DNPRSEDPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEMLNKQD-VLVVAGK 467
                     +  E++ G            F  K + ++A++  I      D VLV A  
Sbjct: 394 I-------GHLAKELVDGATNGSSSTRGLWFENKADFLDAMKDLI---KDGDNVLVKASH 443

Query: 468 GHETVHIVT 476
           G +   IV 
Sbjct: 444 GMDLTTIVE 452


>gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
 gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
          Length = 454

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 88/467 (18%), Positives = 169/467 (36%), Gaps = 38/467 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L   D   ++           E +I EV++D+R IQ+G +F+A+VG + D H F  QA  
Sbjct: 4   LTLSDIANIVEG----TQSGGEVQIQEVTTDTRAIQSGALFIALVGERFDAHDFCQQAAD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++V     +         + P ++V +++  L L  + ++ +     LA+TG+ G
Sbjct: 60  KGAAALIVERQLDI---------DIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I    G   +      T  +F  D  +           L        + +
Sbjct: 111 KTTVKEMVASILSGLGQVLY------TAGNFNNDIGVP-------LTLLRSTPQDDFSVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   +      AK  +++ L      A+
Sbjct: 158 ELGANHIGEIAYTTALVKPDIAMVNNVAEAHLEGFGSLDGVKTAKGEIYQGLT-ANGTAL 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLF 304
           I  D        +   +      S        +   +          T+     + +   
Sbjct: 217 INLDSQGESIWSEVLQDKNLITFSKQNTNADFYGSDIAMSSEGYPLFTLHTPIGNVELQL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L GE  V NA+ A+ L I  G     +   L+ L  V  R +          I   Y  
Sbjct: 277 SLLGEHNVANAVAASALAIQCGATLEQIKIGLQSLSKVKRRVDVEKLTEHITLIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  +++  +  +     G+  ++ G               +G+ A   A   ++T     
Sbjct: 337 SVPAMKAAVDLLAQFKQGQRWLILGNMAELGHESLALHKEVGQHAAPFAFEHVLT----Y 392

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGK 467
            ED  K+ +++  G+  F    + +E I    I++      L+V G 
Sbjct: 393 GED-AKVISDLCGGM-HFQSHDSMLEYIERNLIQLNQTSHTLLVKGA 437


>gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9]
 gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9]
          Length = 452

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 98/447 (21%), Positives = 172/447 (38%), Gaps = 35/447 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q        V +DSR I+AG +FVA+ G + D H F+   +A+GA   VV   + L    
Sbjct: 16  QGDNTGFTRVVTDSRAIRAGDLFVALKGERFDAHDFVADVLARGAAGAVVRCDFDL---- 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-QRSGL 142
                  P++ V + R  L   A+    +    +  +TG++GK++V   ++ +  Q  G 
Sbjct: 72  ----PGAPLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGKTTVKEMLRGMLAQWLGD 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +      +T  +F  D  +            + +   G+ H        GL        
Sbjct: 128 EA----VLATGGNFNNDIGMPLTLLGLRDTHRAAVIEMGMNHAGELTYLSGLA------- 176

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N  R HI +  + +A   AK  +F  L   +  A+I  DD      +  A  
Sbjct: 177 RPTVALVNNALRAHIGHFGSVEAIAQAKAEIFAGL-AADGVAVINRDDPNRDLFVAAAAG 235

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              R++  G     +H      + +  ++T+         + P+PG+  + NAL A  + 
Sbjct: 236 R--RIVEFGLAAGDVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANALAACAVA 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+G+    ++  L+    VPGR  F    S    I   Y    +S+   +  +    SG
Sbjct: 294 SAMGVPLPAMVAGLQAFAGVPGRLAFRRAVSGLTVIDDTYNANPDSVRAAI-AVLAARSG 352

Query: 383 RIIVVFGCGGDRDQGKRPIMGKI--ALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           R  +VFG  G+  +G   +  +I  A   A +  +VT           +  E        
Sbjct: 353 RRWLVFGDLGELGEGAPALHAEIGQAAKAAGLDGLVT--------LGTVSREAAAAFGPG 404

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               + +EA+  A+  L   D ++V G
Sbjct: 405 ALACDSVEAVLEALAPLGAADSVLVKG 431


>gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
 gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
          Length = 482

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 180/456 (39%), Gaps = 33/456 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           ++   +   +  +  V++DSR +Q G +FVA++G + D H F+   +A+GA A++VS   
Sbjct: 18  MAGAHLAGPDAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPP 77

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +    +    S   +L V +TR  L   A+    + P  ++AVTG++GK++V   +  + 
Sbjct: 78  A----AMLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVF 133

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                +  +    +T  +F  D        I L   L  L++Q    V     +H  +  
Sbjct: 134 A---CAVGEDARLATAGNFNND--------IGLPLTLFRLNAQHKLAVLELGMNHPGETE 182

Query: 198 RLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            L  I +       N  R+H ++  + +A       +   L P +  A+   D A   E 
Sbjct: 183 VLATIAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAAL-PADGVAVFPRDAANGGEY 241

Query: 257 --MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             + RA     RVL  G +G  +    V    + Q V +   G  F F  PL G     N
Sbjct: 242 APLWRAAAGTRRVLDFGIEGGAVSAT-VTDTADGQHVDVQAPGLRFSFTLPLLGVHNARN 300

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A    +A GI   ++ + L     V GR +       G  +   Y    +S+   + 
Sbjct: 301 ALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVVDDTYNANPDSVRAAID 360

Query: 375 NIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAE 431
            + T+ + R +V+   G    QG      +G  A D   D  + T +  R      +   
Sbjct: 361 ALATLPAPRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARH-----VVDA 415

Query: 432 IIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
              G   F       EA I   +  +     ++V G
Sbjct: 416 FGGGARHFAS----AEALIEQGVPAIAPGATVLVKG 447


>gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 460

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 178/467 (38%), Gaps = 38/467 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  DF  L N L+    Q   + +  +++D+R I +G +F+A+ G   DGH FI QA  
Sbjct: 1   MIPMDFDWLANVLA-TDYQGDNQPVLNINTDTRSICSGEVFLALKGPNFDGHKFIAQAKQ 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  ++V     +         + P  +V +TR  L +    +  +     +A+TG+ G
Sbjct: 60  NGAIGVIVQHKVDV---------DIPQFIVADTRLALGIIGGAVMAQVAPKTIAITGSVG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I    G         +T  +F  D        I +   L  L  Q    V
Sbjct: 111 KTTVKEMCAAILSVHGD------VLATKGNFNND--------IGVPLTLLRLEPQHRFAV 156

Query: 186 SVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
               ++H G   +     K       N+   H++   +      AK  +F+ L   +  A
Sbjct: 157 IELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKAKGEIFDGL-KDDGVA 215

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  D  +S+  + +         S   +            + +   T+  +        
Sbjct: 216 IVNCDSEFSQYWLDKLDGRKVTRFSSSEKLDIWAENISLDENARASFTLCTKNAQIPVKL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG+  + NAL+AA L     +    +   L  +  V GR   +  +     +   Y  
Sbjct: 276 ALPGKHNISNALIAAALTSEFDVTLEDIANALATMGDVKGRVNLINVSDLLTVVDDTYNA 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVT-DDNPR 421
              S++  +  +  +   RI+ +   G   +  +     +G+ AL+     + T     R
Sbjct: 336 NVKSVKAAIDLLSDMQGHRILALGDMGELGEEARQYHQEVGEYALEQGINELFTLGVLSR 395

Query: 422 SEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   A  ++G+P   F  +   ++ I+T+I+ ++K+  +VV G
Sbjct: 396 Y-------ASDVYGLPNRHFSNREQMLQQIQTSIKKVDKKTTIVVKG 435


>gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
 gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
          Length = 477

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 100/469 (21%), Positives = 166/469 (35%), Gaps = 39/469 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  +   P+      I+ +S DSR +Q G  F AI G   DGH F   AI  GA  +VV
Sbjct: 10  LVTAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKAGAGVLVV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +         +  R   PI+VV++    L         +    I+AVTG++GK++    +
Sbjct: 70  AEG----KLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSH 192
           + +    G                  +  +  +   +   L+ +          +  +  
Sbjct: 126 RHVLSAVGKVHA--------------SAQSFNNHWGVPLTLARMPVDCDYAVFEIGMNHP 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              +  +  ++      T +   H+ + +       AK  +FE + P +  AI+  DDA 
Sbjct: 172 DEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEP-DGAAILNRDDAR 230

Query: 253 SKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            K + K AH AG   V   G   +    L K     +   +   + G D       PG  
Sbjct: 231 FKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRH 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSL 369
            V N L   G    +  D   V+  L  L    GR +       GG I  +D ++ +N  
Sbjct: 291 MVQNVLAVLGAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLIDESYNANPA 350

Query: 370 EMI-----LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
            M      L        GR I V G   +       +   +A    D+ + T        
Sbjct: 351 SMAAAMALLNTTPVAGEGRRIAVLGDMLELGDHSAKLHAALA----DLIVGTGTQTVFLG 406

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRT---AIEMLNKQDVLVV-AGKG 468
            PE     +   +P  I+   R  A       +  L   DV+++ + KG
Sbjct: 407 GPE--MKALAEALPAEIQTEYRAGAAELKPVLLAALKPGDVVMIKSSKG 453


>gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
          Length = 450

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 146/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 20  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 73  KNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 127 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+  +   ++ AD+     +          V
Sbjct: 180 AITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLVQT---V 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +    G+
Sbjct: 236 TTFGIGNGDVHAE--VTAKGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFGL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 292 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 351 AVLADMLELGKESLNMHAQMSEH 373


>gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
 gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
          Length = 450

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 146/383 (38%), Gaps = 31/383 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V  DSR I  G +FV + G + DGH FI QAI  GA A   S             
Sbjct: 20  TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASASFWSLPVEQ------AP 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P++ V +  K +   A+    K    ++A+TG++GK++       +         + 
Sbjct: 73  KDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSE------KY 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  ++  +  L              +   G+ H +       + Q         A 
Sbjct: 127 KTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQ-------PKAA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           + T +G  HI+   +++    AKM + + L+P +   ++ AD+     +          V
Sbjct: 180 AITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLVQT---V 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G     +H +       K Q    VEG+ F    PLPG + V NAL+A  +     +
Sbjct: 236 TTFGIGNGDVHAE--VTAEGKAQTDFVVEGETF--TIPLPGSYNVTNALIAYTIGRFFEL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + + L  + +   R E++ T   G  I  D Y     ++ ++L   + +   GR I
Sbjct: 292 SIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKGRRI 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALD 408
            V     +  +    +  +++  
Sbjct: 351 AVLADMLELGKDSLNMHAQMSEH 373


>gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
 gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
          Length = 455

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/463 (19%), Positives = 180/463 (38%), Gaps = 32/463 (6%)

Query: 5   DLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L+   F E++  +     +     K N VS+D+R I    IFVA+ G+  + + +I +A
Sbjct: 2   ELLK--FEEIVEAIHGKIHINSNCHKYNSVSTDTRKINENSIFVALKGDNFNANNYIVEA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA   +V     ++     ++ NT +++V+NTRK L   A     K    I+ +TG+
Sbjct: 60  SKKGANLCIVD---EIKFNEGDLQENTSVILVENTRKALLDLAELYRSKLNIKIIGITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S            G            ++      +       L           V 
Sbjct: 117 TGKTSTKDLTAAAL---GSKFKVFKTQGNFNNEIGLPLMIFNLDNTL----------DVA 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S            +      TN+G  HI+  +T++    AKM +  +   K+S 
Sbjct: 164 VLEMGMSDFSEIHRLAKVARPDIALITNIGISHIENLKTRENILKAKMEI-TDFFNKDSI 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            I+  ++    +++K   +    ++++G+ +G       +    N  + T+    ++  F
Sbjct: 223 LIVNNEN----DLLKDISSNDYNIINIGFNEGVAYKATDILTDENHIEFTVCHNDENEKF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+PG+  + N+L+A      + I+   + + ++ L V   R + V        I  D 
Sbjct: 279 NIPVPGKHNILNSLLAIAAGRVLNIEYDKLKDGIKNLSVTSMRLDIV--KGEKFTIVDDC 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y  + +S+   +  + TI   R I V G   +          ++A + AD   V      
Sbjct: 337 YNASPDSMRAAIDVMNTIKGKRKIAVLGTMKELGVDSYKFHKEVA-EYADSKNVDLLITV 395

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E  E  +         F    +  E I      +NK D+++V
Sbjct: 396 GEFNEAYKEGFNKTSKQFETIEDAAEFIT---NNINKDDIVLV 435


>gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Lens]
 gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Lens]
          Length = 445

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 139/390 (35%), Gaps = 38/390 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I  VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+            
Sbjct: 17  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLIDGVH----- 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-----QRSG 141
               P  VV +    L+  A+    +    I+A+TG++GK++V   +  I         G
Sbjct: 72  ---IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQPSHATKG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG                         L+           + A+  G   H +  
Sbjct: 129 NLNNHIGVPL--------------------SMLALNKQHRYAVFELGANHPGEIAHTVGI 168

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++       N+   H++   +      +K  + + L P    AI+  DDAY+        
Sbjct: 169 VQPDVSLINNIAPAHVEGFGSIDGVARSKGEIHQGLSPT-GVAIVNDDDAYAHFWDDLIA 227

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +      S  +             H +   T+ +     +    +PG   V NAL AA  
Sbjct: 228 DKKILRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAAC 287

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C A+GI    +   L     V GR   +   ++   I   Y     S+   L+ + +   
Sbjct: 288 CYAVGISGNDIQRGLAHFGGVKGRMTMLSGQNQSTVIDDTYNANLRSVLTALE-VLSGRP 346

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALD 408
           GR I VFG     G+        +G  A  
Sbjct: 347 GRKIFVFGDMGELGEWTTQHHREVGIAARQ 376


>gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halorhodospira halophila SL1]
 gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Halorhodospira halophila SL1]
          Length = 450

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 141/362 (38%), Gaps = 31/362 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR   +G +FVA+ G + DGH F   A A+GA A++ +               
Sbjct: 25  VTGVALDSRRATSGSLFVALPGARCDGHDFADDAAARGAVAVLGTRPVGA---------- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P LVV++    L++  +    +    ++AVTG++GK++V   +  +   SG +    G 
Sbjct: 75  LPTLVVEDPAAALAVLGAECRRRSGVRLVAVTGSNGKTTVKELLAAMLAESGPTLATEGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + +             P  L +  +         + + A++ G         +   G  
Sbjct: 135 RNNLLGV----------PEMLCRLGA---GHRFAVIEMGANAPGEIAQLTAWAQPDVGVV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G  H++   +      AK  LF+ L P++  A++ ADD +     + A    C  L+
Sbjct: 182 TNAGPAHLEGFGSLDGVARAKGELFQGL-PRQGVAVLNADDDFCGLWREMAGARRC--LT 238

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G         +     +  ++ + + G       PL G     N   AA    A+ + +
Sbjct: 239 FGADAG-----QFRHRGHGSRLELDLGGGWMAAPTPLLGGHNAQNIAAAAACAAALEVPA 293

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +L+ +     VPGR E    +  G  +   Y     SL+  +  +    +   +++  
Sbjct: 294 RTILDRISSAAAVPGRLELRRGDHGGWLVDDTYNANPASLQAAIDTVTGFQAAPWLLLGA 353

Query: 390 CG 391
            G
Sbjct: 354 MG 355


>gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
 gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
          Length = 482

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 180/456 (39%), Gaps = 33/456 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           ++   +   +  I  V++DSR +Q G +FVA++G + D H F+   +A+GA A++VS   
Sbjct: 18  MAGAHLAGPDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPP 77

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +    +    S   +L V +TR  L   A+    + P  ++AVTG++GK++V   +  + 
Sbjct: 78  A----AMLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVF 133

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                +  +    +T  +F  D        I L   L  L+++    V     +H  +  
Sbjct: 134 A---CAVGEDARLATAGNFNND--------IGLPLTLFRLNARHKLAVLELGMNHPGETE 182

Query: 198 RLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            L  I +       N  R+H ++  + +A       +   L P +  A+   D A   E 
Sbjct: 183 VLATIAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAAL-PADGVAVFPRDAANGGEY 241

Query: 257 --MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             + RA     RVL  G +G  +    V    + Q V +   G  F F  PL G     N
Sbjct: 242 APLWRAAAGTRRVLDFGIEGGAVSAT-VTDTADGQHVDVQAPGLRFSFTLPLLGVHNARN 300

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A    +A GI   ++ + L     V GR +       G  +   Y    +S+   + 
Sbjct: 301 ALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVVDDTYNANPDSVRAAID 360

Query: 375 NIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAE 431
            + T+ + R +V+   G    QG      +G  A D   D  + T +  R      +   
Sbjct: 361 ALATLPAPRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARH-----VVDA 415

Query: 432 IIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
              G   F       EA I   +  +     ++V G
Sbjct: 416 FGGGARHFAS----AEALIEQGVPAIAPGATVLVKG 447


>gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 503

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 153/406 (37%), Gaps = 28/406 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++ A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV +T   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVER--------LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   ++     
Sbjct: 107 TGSNGKTSVKALLLSILQEAGRVEG-----TTVYATPGNRNNEIGLPLAV---IAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCR---VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   ++  G Q G  I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQAQPVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR       S   
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSGAV 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            I   Y     S      +      G   +V G   +       + 
Sbjct: 338 LIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRELGAEGLALH 382


>gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 456

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 179/466 (38%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++ +A 
Sbjct: 4   MLELNLQEIVKATKGVLLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAF 63

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 64  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +         +     T  +F                 L   S+  V  
Sbjct: 121 GKTSTKDLVAAVLSD------KYKVFKTKGNF-------NNEIGLPLMILELDSTYDVAI 167

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G  +   +      G  TN+G  HI+  +T++    AKM +        +  
Sbjct: 168 LEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLV 227

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   DD      +    +A  +++  G    F I  K +       + T+    K+ +F 
Sbjct: 228 VCGNDD-----FLGSLPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             +PGE  + N ++   +   +G+    +   L  +     R E +     G  I  D Y
Sbjct: 283 LDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLNNIEATSMRLELI--KKDGFSILNDCY 340

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA-LDLADIAIVTDD 418
             +  +++  +  ++ I   R I V G       + +     +GK A  +  +  +   D
Sbjct: 341 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 400

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E I+     G   +    N+ E I+  + ++   D+++V
Sbjct: 401 FS-----ENIKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 438


>gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 471

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 146/385 (37%), Gaps = 24/385 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R I    +F+A+ G   DGH FI  A   GA A++VS     +         
Sbjct: 30  IQGVSTDTRQINPDDLFIALSGPNFDGHKFIDTAAQGGAVAVIVSRKVDTE--------- 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              ++V +T++ L      +  +     +A+TG+SGK++V   V  I  R G        
Sbjct: 81  LAQILVSDTKEALGRLGQAIKREVAPKTVAITGSSGKTTVKEMVAAILSRRGK------V 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +T  +F  D  +           L   +      V + A+  G   +  + +K    + 
Sbjct: 135 LATKGNFNNDIGVP-------LTLLRLEADHEFAVVELGANHLGEIAYTTELVKPDVATI 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N    H++   +      AK  +F+ L  K+  AI  AD  +      +  +   +  S
Sbjct: 188 VNAAAAHLEGFGSLLGVARAKSEIFKGL-GKDGLAIFNADSQFYAFWHGKYEHLRNQAFS 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +  +     V  ++      +           PLPG   V NALV+A L I +G + 
Sbjct: 247 TKDEADYYAQDVVLGLNGCADFLMVTPLGKVSISLPLPGLHNVSNALVSAALAIEVGANL 306

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V   L+ +  V GR +    + +   +   Y     S+   +  + +   GR ++V G
Sbjct: 307 QDVQAGLQYMAQVSGRLQVKQLSGQVKVLDDTYNANVASVNAAIDLLGSFA-GRKVLVLG 365

Query: 390 CGGDRDQGKRPIMGKIALDLADIAI 414
              +  +  R    ++     +  I
Sbjct: 366 DMAELGERARFYHQQVGEYAKEKGI 390


>gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 453

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 174/465 (37%), Gaps = 36/465 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           DL   +  + I+   +  ++  E    ++S+D+R I    +F+A+ GN  +G+ ++ +AI
Sbjct: 2   DLTLNEVLKAIDGELL--IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAI 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA   ++     +      +     ++ V++ +  L   A     K    ++ +TG++
Sbjct: 60  KAGATVAIID---EVNFKLEELNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITGST 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V            +     T  +F                     SS  +  
Sbjct: 117 GKTSTKDLVAAFLS------GKYSVFKTKGNF-------NNEIGLPLMIFELDSSYDIAV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  ++        +  +      TN+G  HI+Y +T++     K  + +      +  
Sbjct: 164 LEMGTNNFDEIHRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLV 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISVEGKDFDF 302
           I Y +D     + K   +   ++  +GY  K+  + + +           ++  G+   F
Sbjct: 224 INYENDM----LQKVNEDHEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRF 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + GE  + NAL+   +    GI    +   L        R EF+  N     I   Y
Sbjct: 280 KLNMVGEHNILNALLGIRISENFGITFEEMELGLNNFEATSMRLEFIKKN-NFTIINDCY 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             + +S++  L  ++T +  R I V G     GD  +    I+GK A+  ADI + T   
Sbjct: 339 NASPDSMKSALSVLKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTT--- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E  +  ++    G   F  K +          ++   DV++V
Sbjct: 396 --GEFRDNYKSGFGKGAVSFNCKEDLQ---NYLCNLIKDGDVILV 435


>gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 460

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 91/472 (19%), Positives = 171/472 (36%), Gaps = 48/472 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  DF  L N L+    Q   + +  +++D+R +  G +F+A+ G   DGH FI +A  
Sbjct: 1   MIPMDFDWLANVLT-TDYQGDNQHVLNINTDTRTVCGGEVFLALKGPNFDGHKFIAEAKQ 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  ++V     +         + P  +V +TR  L    + +  +     +A+TG+ G
Sbjct: 60  KGAIGVIVQHKVDV---------DIPQFIVSDTRIALGAIGTAVMAQVAPKTIAITGSVG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I    G         +T  +F  D        I +   L  L  Q    V
Sbjct: 111 KTTVKEMCAAILSVHGD------VLATKGNFNND--------IGVPLTLLRLEPQHRFAV 156

Query: 186 SVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
               ++H G   +     K       N+   H++   +      AK  +F+ L   +  A
Sbjct: 157 IELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKAKGEIFDGL-KDDGVA 215

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  D  +S+  + +      +  S   +            + +   T+  + K      
Sbjct: 216 IVNCDSEFSQYWLDKLEGRNVKCFSTTEKLDIWAENITLDANARASFTLCTKNKQVPVTL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG+  + NAL+AA L     +    +   L  +  V GR   +  +     +   Y  
Sbjct: 276 ALPGKHNISNALIAAALTSEFDVTLEEIANALATMGDVKGRVNLIEVSDLLTVVDDTYNA 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRS 422
              S++  +  +  +   RI+ +   G   +        +G+ AL+     + T      
Sbjct: 336 NVKSVKAAIDLLSDMQGHRILALGDMGELGEDARKYHQEVGEYALEQGIDELFT------ 389

Query: 423 EDPEKIRAEIIHGIPGFIEKGNR--------IEAIRTAIEMLNKQDVLVVAG 466
                    +        E  NR         + I+ +I  +NK+  +VV G
Sbjct: 390 ------LGVLSKYASDVFELPNRHFSSREQMQQKIQESINKVNKKTTIVVKG 435


>gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Paris]
 gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Paris]
 gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 445

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 139/390 (35%), Gaps = 38/390 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I  VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+            
Sbjct: 17  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLIDGVH----- 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-----QRSG 141
               P  VV +    L+  A+    +    I+A+TG++GK++V   +  I         G
Sbjct: 72  ---IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQPSHATKG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG                         L+           + A+  G   H +  
Sbjct: 129 NLNNHIGVPL--------------------SMLALNKQHRYAVFELGANHPGEIAHTVGI 168

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++       N+   H++   +      +K  + + L P    AI+  DDAY+        
Sbjct: 169 VQPDVSLINNIAPAHVEGFGSIDGVARSKGEIHQGLSPT-GVAIVNDDDAYAHFWDDLIA 227

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +      S  +             H +   T+ +     +    +PG   V NAL AA  
Sbjct: 228 DKKILRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAAC 287

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C A+GI    +   L     V GR   +   ++   I   Y     S+   L+ + +   
Sbjct: 288 CYAVGISGNDIQRGLAHFGGVKGRMTMLSGQNQSTVIDDTYNANLRSVLTALE-VLSGRP 346

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALD 408
           GR I VFG     G+        +G  A  
Sbjct: 347 GRKIFVFGDMGELGEWTTQHHREVGIAARQ 376


>gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
 gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
          Length = 476

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 164/444 (36%), Gaps = 37/444 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV       + S       P+
Sbjct: 39  ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD------EVSVPTADCGPL 92

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A+         ++A+TG++GK++    +     + G   +     + 
Sbjct: 93  VAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 152

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +          T    ++              + +  +S G         +      TN+
Sbjct: 153 LIGMPLYAANLTEDAEFV-------------VLEMGMNSPGEVDALSRIARPDVAVITNV 199

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   R++S G 
Sbjct: 200 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFGV 258

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    ++          VT    G++  +          Y+  + A +  A  ID    
Sbjct: 259 -GVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAVGHAFSIDLTQA 317

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRI----- 384
              +E+   + GR +   T  +G  I      Y     S+   ++N+  +   R+     
Sbjct: 318 RGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVA 377

Query: 385 IV--VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           I+  +   G       R ++ +I     D+      +           +++         
Sbjct: 378 ILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSH------MLALYDVLPQHLRGGHF 431

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +  EA+     ++   D ++V G
Sbjct: 432 ADHGEALAHLERIIKPGDGVLVKG 455


>gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
          Length = 446

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 152/409 (37%), Gaps = 35/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+ A         +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNRA---------VKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G            S  + +N +  P        L      
Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLA--------SEKSFNNNIGVPLT-----LLRLRPDH 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE L   
Sbjct: 151 HYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGL-SS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++     AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRPLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR   V      G I +
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRL--VEQKGYRGAIII 327

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           D ++ +N L +     +     G  ++V G   +  QG      +I   
Sbjct: 328 DDSYNANPLSVSAAIAVLAKRPGHSVLVLGDMLELGQGAEQFHQEIGKR 376


>gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 460

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 80/483 (16%), Positives = 182/483 (37%), Gaps = 37/483 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L  +      E+++   +    +   +I  +  DS+ I+ G +FV I+  K DGH ++ 
Sbjct: 6   NLIQIQLNKLEEVVDGEGLQ-ESFHNIEIQGICIDSKKIKKGNLFVPIIRVK-DGHDYVK 63

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+  GA A +   +Y       T     PI+ VD+T   L   A     +   N++ +T
Sbjct: 64  EAMDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRKELNVNVIGIT 117

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++V   +  I   +       G  ++                +L           
Sbjct: 118 GSNGKTTVKDIINTILSTTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILE-------- 169

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  S  G  ++     +      T +G+ H++   +++    AK+ + + L   E
Sbjct: 170 -----MGMSEKGQIRNLSKIAQPDVAIITMIGQSHLETLGSREEIAKAKLEIIDGL-KDE 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +   D+    +  K   +  C+     Y   F          ++  +   +   +  
Sbjct: 224 GLCLYNGDEPLLLKN-KNLSSINCKAFGEKYTNDFF---PTNVQLDEYGIHFKLNDSNIQ 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  PL G+  + NA+V   +     +    + + L ++++   RF+F+   +    I   
Sbjct: 280 YDVPLHGKHNILNAIVGIAIGQYYNVPVEKIQKALRQVNITHMRFQFLTAKTGFTIINDA 339

Query: 362 YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTD 417
           +  + +S++  ++  +T+    + I+V G   +     +     +GK+    +   + T 
Sbjct: 340 WNASPSSMKAAIETFQTLNAYKKKIIVIGDMLELGKNAETYHREIGKMLNQESIQYVFT- 398

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAG-KGHETVHI 474
                E  E +  E          +    +A      ++++ K+D++++ G +G     I
Sbjct: 399 ---YGELAEIVAEEARKKYDSGKVQSFNSKAKIAEEVLKVITKKDIVLLKGSRGIALEEI 455

Query: 475 VTN 477
           V N
Sbjct: 456 VRN 458


>gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
 gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
          Length = 444

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 142/385 (36%), Gaps = 36/385 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  V+ DSR ++ G +FVA+V    DGHL+I QA+A GA A++V   ++       I
Sbjct: 19  DADITGVAFDSRQVKIGDLFVALVSEH-DGHLYIQQALANGAVAVLVDDQHA-------I 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P ++V +T   L              ++A+TG++GK++       I          
Sbjct: 71  TPDIPAIIVPDTLLALQRLGQYRREMVNPKVIAITGSNGKTTTKDMTAAIL--------- 121

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               ST     +               LS      V  V +     G        +    
Sbjct: 122 ----STKFKTFKTPENYNNEIGVPMTLLSMPDDTEVLVVELGMDRPGQLTVLSHLVMPDI 177

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +G  HI++ QT+     AK+ +  + L  +   ++  D+     ++ +A     R
Sbjct: 178 AIITMIGEAHIEFFQTRDNIARAKLEI-TQGLKSDGILLVPFDEP----LLTQAAVKSDR 232

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
               G +     +  + A+      T     +   F  P+ G + V NAL A      + 
Sbjct: 233 QY-FGEK-----VSAIQALATVTTFTF----EQQKFAIPVMGRYNVMNALAAISAGKLLS 282

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ID       L+   +   R E + T+     I   Y     ++  +L  ++++ + R  V
Sbjct: 283 IDLKHAALALKNFDLTKNRTERLVTSQGVVLISDVYNANPTAVAAVLSTLKSLPARRKYV 342

Query: 387 VFGCGGDRDQGKRPIMGKIALDLAD 411
           V G   +       +  ++   + D
Sbjct: 343 VLGDMLELGTQANHLHAELGPKILD 367


>gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 453

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 178/466 (38%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +         +     T  +F                 L   S+  V  
Sbjct: 118 GKTSTKDLVAAVLSD------KYKVFKTKGNF-------NNEIGLPLMILELDSTYDVAI 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G  +   +      G  TN+G  HI+  +T++    AKM +        +  
Sbjct: 165 LEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   DD      +    +A  +++  G    F    K +       + T+    K+ +F 
Sbjct: 225 VCGNDD-----FLGALPSAEYKIVKTGVGENFKVGAKNIALEELSSKFTVYDGEKEEEFS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             +PGE  + N ++   +   +G+    +   L+ +     R E +     G  I  D Y
Sbjct: 280 LDMPGEHNISNLILGIAIAKELGVSFEEMKRGLKNIEATSMRLELI--KKDGFSILNDCY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA-LDLADIAIVTDD 418
             +  +++  +  ++ I   R I V G       + +     +GK A  +  +  +   D
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E I+     G   +    N+ E I+  + ++   D+++V
Sbjct: 398 FS-----ENIKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435


>gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 461

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 89/469 (18%), Positives = 167/469 (35%), Gaps = 33/469 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  +  ++   L    +      I  VS+D+R      +F A+ G K DGH ++ +A+A
Sbjct: 1   MIKLNVKKIAQILKAKLIGEETLTIESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P LVV +TR  L   A+ L  +     +A+TG+ G
Sbjct: 61  QGCTAVVVDHPCEI---------DVPQLVVKDTRLALGRLAAWLRRELEPLTVAITGSCG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I QR+      +    T  +F  D  +         K    +   G  H 
Sbjct: 112 KTTVKEMTAAILQRTAGDDEAV--LFTEGNFNNDIGVPLTLLRLTEKHEYAVIELGANHA 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              A +  L                N+   H++   + +    AK  ++  L P +  AI
Sbjct: 170 GEIAYTAHLTM-------PDVALVNNVSAAHLEGFGSVEGVAQAKGEIYSGLTP-DGVAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D  Y+       ++      +  + G   + +K+       + T++          P
Sbjct: 222 LNLDSNYAHYWGGDINDREFESFAYDHVGADYYAEKIMLSEYGSRFTLNTPKGAIKIELP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+  V NA+ A+ L + +G     +   LE    V GR   +  ++    +   Y   
Sbjct: 282 YLGKHNVANAVAASALAMNVGASLEDIKRGLENPSHVKGRLFPIQLSTNLLLLDDTYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S++  +  +        I  FG      D        +   A       +VT      
Sbjct: 342 VASVKSAISVLSDYREAFRIFAFGDMAELGDETISCHQEVADFAKAANLDLVVT-----Y 396

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                + ++   G+          +  E I   ++    +D++++A KG
Sbjct: 397 GSESAVVSKACGGVHFSNKEALIASLKEIISHQLK--ENEDIVLLA-KG 442


>gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 171/428 (39%), Gaps = 34/428 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ ++     ++++Q        +E     + +D+R    G +F+A+ G   D H F+
Sbjct: 4   MDLQTIVKVTGAKILSQ--------KETNFAGIGTDTRAQLQGQLFIALKGEAFDAHNFL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ QGA  ++V    +L +    ++    IL+V +T K L    +    +    I+ +
Sbjct: 56  DKAVEQGASGLLVHEENALIE---KLKDKATILLVPDTLKALQKLGNWARHESSARIVGI 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++   F   +   S    +  G  +               P  L   L    ++
Sbjct: 113 TGSNGKTTTKEFTAALVGSSMDVHYNKGSFNN----------HWGVPFTL---LQLPPNK 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  +  G     +   +      T +GR H+++  T +    AK  ++E     
Sbjct: 160 DVAIIEMGMNHAGEITELVHIAEPDVVVCTMVGRAHMEFFGTIEKVAEAKEEIYEA-AGD 218

Query: 241 ESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVE 296
           ++  I   D+  +  +  +A +     R+L+   +     +  + +  N  +++I  S+ 
Sbjct: 219 QTVRIYNLDNTQTHNMYVKARDKFPKARILTFSSEDPRADVHLMISSMNMSEISIKGSIG 278

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+       + G   + N + AA + +A+G+  A V   L       GR + V   S   
Sbjct: 279 GEAGTARVQVFGAQNLTNLMAAASVGLAVGMTPAQVWAGLPACKTNWGRNQLVHLKSGAQ 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGK----IALDLAD 411
            I+  Y    +S++ ++ N++ +T  GR + VFG   +       +  +    +     D
Sbjct: 339 MIFDAYNANPDSMKALIDNMKLLTVPGRKVGVFGQMRELGSASANLHEELGTWVGQAGFD 398

Query: 412 IAIVTDDN 419
                 D+
Sbjct: 399 KVYFIGDD 406


>gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mesorhizobium loti MAFF303099]
 gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium
           loti MAFF303099]
          Length = 477

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 102/468 (21%), Positives = 169/468 (36%), Gaps = 37/468 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  +   P+      I+ +S DSR +Q G  F AI G   DGH F   AI  GA  +VV
Sbjct: 10  LVAAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKAGAGVLVV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +         +  R   PI+VV++    L         +    I+AVTG++GK++    +
Sbjct: 70  AEG----KLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH- 192
           + +    G                  +  +  +   +   L+ +       V     +H 
Sbjct: 126 RHVLSAVGKVHA--------------SAQSFNNHWGVPLTLARMPDNCDYAVFEIGMNHP 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              +  +  ++      T +   H+ + +       AK  +FE L P E  A++  DD  
Sbjct: 172 DEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEP-EGAAVLNRDDGR 230

Query: 253 SKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            K + K AH AG   V   G   +    L K     +   +   + G D       PG  
Sbjct: 231 FKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRH 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSL 369
            V N L   G    +G D   V   L  L    GR    V  +  G    +D ++ +N  
Sbjct: 291 MVQNVLAVLGAAQLVGADLNKVALALADLSAERGRGKRHVLRHPGGPITLIDESYNANPA 350

Query: 370 EMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            M               GR I V G   +       +   +A    D+ + T        
Sbjct: 351 SMAAAMALLNATPVTGEGRRIAVLGDMLELGDHSAKLHAALA----DLIVGTGTQTVFLG 406

Query: 425 PEKIRAEIIHGIPGFIEKGNRI--EAIR-TAIEMLNKQDVLVV-AGKG 468
             ++RA +   +PG I+   R   E ++   +  L   DV+++ + KG
Sbjct: 407 GPEMRA-LAEALPGDIKMEYRAGVEQLKPVLLAALKPGDVVMIKSSKG 453


>gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 465

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 149/400 (37%), Gaps = 33/400 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F     + +I  + +DSRH + G  F+A+ G + D H F+ Q  AQG +  +V       
Sbjct: 28  FRQNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQGCQIAIVERP---- 83

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
                I S+   L+V +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R
Sbjct: 84  -----IDSDIAQLIVKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTTKEMLGSILSR 138

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +    G  +                      L          + + A+  G   +  
Sbjct: 139 LAPTLITRGNLNNDLGVPMM-------------LLELRPEHQFAVMELGANHQGEIDYTS 185

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + ++       N+G  H+     +     AK  ++  +LP +  AI+ +DD ++  + + 
Sbjct: 186 NLVQPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHILP-DGTAIVPSDDDFTATIRQN 244

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A N    +LS G +G  ++  ++       Q  +           P  G   V NA  A 
Sbjct: 245 AGNHP--ILSFG-EGGDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAAT 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
              +AIGI    +++ LE+     GR  F+    +      D Y     S+    K +  
Sbjct: 302 AFALAIGIPLDDIVQGLEQAQGAKGRLNFI--QHQNYLFIDDTYNANPTSMRAAAKVLLQ 359

Query: 379 ITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIV 415
               +++V+   G   D        +   +     D  +V
Sbjct: 360 QQGLKVMVMGDIGELGDSSWQEHHDLGRDLIELPLDHLVV 399


>gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
 gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
          Length = 463

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 164/444 (36%), Gaps = 37/444 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV       + S       P+
Sbjct: 26  ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD------EVSVPTADCGPL 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A+         ++A+TG++GK++    +     + G   +     + 
Sbjct: 80  VAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +          T    ++              + +  +S G         +      TN+
Sbjct: 140 LIGMPLYAANLTEDAEFV-------------VLEMGMNSPGEVDALSRIARPDVAVITNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   R++S G 
Sbjct: 187 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFGV 245

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    ++          VT    G++  +          Y+  + A +  A  ID    
Sbjct: 246 -GVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAVGHAFSIDLTQA 304

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRI----- 384
              +E+   + GR +   T  +G  I      Y     S+   ++N+  +   R+     
Sbjct: 305 RGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVA 364

Query: 385 IV--VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           I+  +   G       R ++ +I     D+      +           +++         
Sbjct: 365 ILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSH------MLALYDVLPQHLRGGHF 418

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +  EA+     ++   D ++V G
Sbjct: 419 ADHGEALAHLERIIKPGDGVLVKG 442


>gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK49]
          Length = 456

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 184/479 (38%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENIALRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +                    ++VD+        A     K   ++LAV
Sbjct: 56  PTAFAQGAAATLSERPV----------VEGAYILVDDVLTAFQRLAQYYLKKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFDCNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+  A + +   +L +   R E+      G  I 
Sbjct: 263 QSIDLPVTGKYNATNAMIAAYAALQEGVSEAAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR +VV     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLVVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E ++ A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVQYFVKNDEKDQFEQLKQAVREKLTPADQILLKG 439


>gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
          Length = 463

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 96/482 (19%), Positives = 175/482 (36%), Gaps = 50/482 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         + I+    F      +     S DSR I AG +F A+ G + DGH ++
Sbjct: 1   MKLT---LGQIADWIHAEGDFDSTALAQ---GYSIDSRTIGAGELFFAVRGERVDGHDYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPE 115
             A+A GA A VVS    ++           +L V +       + +   A+R+  +  +
Sbjct: 55  ETALADGAVAAVVS----MRWLKPATVEEGKLLRVPDEDEDCVLQSMQKLANRVRREWGK 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ VTG++GK++    + Q+           G  +                    + L 
Sbjct: 111 RIIGVTGSAGKTTTKECIAQVLSAKFHVLKSEGNLNNGFGMP-------------LQLLK 157

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLF 234
                 V  + +  +  G  +      +      +N+   H+++     +    AK  L 
Sbjct: 158 LEPEHEVAVIEMGMNHAGEIRALAKIAEPDWAVVSNVAPVHLEHFPDGIEGIARAKYELV 217

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292
           E L P +  AI+  DD     V         R +  G         ++   A  +  +  
Sbjct: 218 EAL-PADGIAILNGDDE---RVAAFGKGMRGRTVLYGTLPGLTVRAVEIEEAGLDGTRFR 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + + G+       L G   V NAL A  + +  GID       LE++     R E +   
Sbjct: 274 VGIVGRVQKIHLRLMGRHNVLNALAAVAVGLQSGIDLKDCCLALEQMRPTEKRGEVI--E 331

Query: 353 SRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             G +I  D Y     +LE +++ +R   + R IV+ G   +       +  +  + +A 
Sbjct: 332 RHGAKIINDCYNSNPRALEAMVEALRKTKATRRIVMAGEMLELGPEGAALHRECGIAMAG 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----IEMLNKQDVLVV-AG 466
           + +V            + A ++ G      + N +E    A     E L + DV+++ A 
Sbjct: 392 MDVVVGV-------RGLAASLVEGAESEGVEANFVETPEAAGEWLRENLREGDVVLMKAS 444

Query: 467 KG 468
           +G
Sbjct: 445 RG 446


>gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens str. 13]
 gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium
           perfringens str. 13]
          Length = 453

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/465 (17%), Positives = 178/465 (38%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +         +     T  +F                 L   S+  V  
Sbjct: 118 GKTSTKDLVAAVLSD------KYKVFKTKGNF-------NNEIGLPLMILELDSTYDVAI 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G  +   +      G  TN+G  HI+  +T++    AKM +        +  
Sbjct: 165 LEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   DD      +     A  +++  G    F I  K +       + T+    K+ +F 
Sbjct: 225 VCGNDD-----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             +PGE  + N ++   +   +G+    +   L+ +     R E +     G  I  D Y
Sbjct: 280 LDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELI--KKDGFSILNDCY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  +++  +  ++ I   R I V G       + +     +GK A +     ++   N
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGN 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 E I+     G   +    N+ E I+  + ++   D+++V
Sbjct: 398 FS----ENIKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435


>gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 421

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 139/380 (36%), Gaps = 27/380 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++D+R      +F  + G   DG+ F+P A+ +GA+ +V S      +  A      
Sbjct: 10  KGVTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDPQWNSEPKA------ 63

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +VV +T   L   A+    K    I+A+TG++GK++    +  +  +S  +    G  
Sbjct: 64  --IVVKDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQSFNALKTEG-- 119

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   L       +  V + A+  G             G  T
Sbjct: 120 --------NLNNHLGVPLTL---LRLTFETDIAIVEMGANHPGEIARLCQIADPDFGYIT 168

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N GR H++   + +    AK  L++ L           D++  +E+++          S 
Sbjct: 169 NFGRAHLEGFGSFEGVIRAKSELYQYLKKDNKCIFFSEDNSLQRELLE----GYEPTYSF 224

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +G+     ++  + +   VT+   G++F     L G +   N   A  +     + + 
Sbjct: 225 SLEGREGANLQLSLLKSIPTVTLEWAGQEFS--SALIGNYNATNIAAAMCIGRYFKLSAE 282

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   +E       R +FV        +   Y    +S+   ++  + + S   +++ G 
Sbjct: 283 AIRRGVEGYIPTNNRSQFVEKTRGNRVLMDAYNANPSSMHAAIEAFQALPSAHKVLILGD 342

Query: 391 GGDRDQGKRPIMGKIALDLA 410
             +          ++  D+A
Sbjct: 343 MKELGAYSEREHQQLVTDIA 362


>gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 453

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 173/465 (37%), Gaps = 36/465 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           DL   +  + I+   +  ++  E    ++S+D+R I    +F+A+ GN  +G+ ++ +AI
Sbjct: 2   DLTLNEVLKAIDGELL--IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAI 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA   ++     +      +     ++ V + +  L   A     K    ++ +TG++
Sbjct: 60  KAGATVAIID---EVNFKLEELNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITGST 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V            +     T  +F                     SS  +  
Sbjct: 117 GKTSTKDLVAAFLS------GKYSVFKTKGNF-------NNEIGLPLMIFELDSSYDIAV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  ++        +  +      TN+G  HI+Y +T++     K  + +      +  
Sbjct: 164 LEMGTNNFDEIHRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLV 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISVEGKDFDF 302
           I Y +D     + K   +   ++  +GY  K+  + + +           ++  G+   F
Sbjct: 224 INYENDM----LQKVNEDHEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRF 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + GE  + NAL+   +    GI    +   L        R EF+  N     I   Y
Sbjct: 280 KLNMVGEHNILNALLGIRISENFGITFEEMELGLNNFEATSMRLEFIKKN-NFTIINDCY 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             + +S++  L  ++T +  R I V G     GD  +    I+GK A+  ADI + T   
Sbjct: 339 NASPDSMKSALSVLKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTT--- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E  +  ++    G   F  K +          ++   DV++V
Sbjct: 396 --GEFRDNYKSGFGKGAVSFNCKEDLQ---NYLCNLIKDGDVILV 435


>gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
 gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
          Length = 473

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 176/476 (36%), Gaps = 46/476 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+L  +   E+IN              + VS ++R +  G +FVAI G++ DGH F+  
Sbjct: 7   LQNLSRRFGGEVINNSHA-------VNFSSVSINTRTMSVGDLFVAIKGDQFDGHQFVAN 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  QGA A+VV            + S+ P  +V +T   L   A          I+A+TG
Sbjct: 60  AQNQGAIALVVEKEI--------VDSDLPQWLVGDTTLALGHIAEAQRDNFLGKIVAITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   ++ I + +          +T  +      +           LS  S    
Sbjct: 112 SSGKTTVKGMLESILRVA----VSDHVFATKGNLNNHIGVP-------LSLLSLKSQHQY 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS+ G  Q+     K       N+   H++   +       K  ++  L     
Sbjct: 161 AVIEMGASAVGEIQYLTQMAKPDVAMINNVMSAHVEGFGSIDNIAKGKGEIYNGLT-NAG 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQ------QVT 292
            A+I   D Y+ + +++       + S    V        +  + A + KQ      +  
Sbjct: 220 VAVINIADKYAPQWLEQNSQRQTLLFSASTDVSNAMDMNSVANITATNVKQKHNGCAKFD 279

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + +  K  +    + G   V NAL A+    A+ I    + + L +   V GR   +   
Sbjct: 280 LQLLEKSTEINLSVLGMHNVANALAASTCAYALNISIEDIAQGLSEFTGVAGRLHCLEGV 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLA 410
           +    I   Y    NS    +  +  +++  ++V+       D        +G+ A +  
Sbjct: 340 NDSTVIDDSYNANPNSFCAAIDVLSDMSAKTVLVMGDMAELGDDSDSEHEKIGRYANEKN 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              ++T     SE+  K+ +                + I  A++  NK  VL++ G
Sbjct: 400 IDLLLTLGRQ-SEEASKVFSGDKQHFDSV------EQLITVAVQQANKSTVLLIKG 448


>gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
 gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
          Length = 456

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 165/477 (34%), Gaps = 72/477 (15%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            Q+       V  DSR I+ G +F+ + G + DGH FI  A   GA A +          
Sbjct: 19  HQFPNCTFRNVEFDSRLIEEGDLFLPLKGAR-DGHDFIATAFENGAVATLSEKELD---- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P ++VD+    L   A     K   ++ AVTG++GK++    +  +   +  
Sbjct: 74  ------DYPSILVDDVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKDMLAHLLSTTYK 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                  L              V      H  D H L  I
Sbjct: 128 TYKTQGNYNNEIGLPYTVLHMPDDTEKL--------------VLEMGQDHMGDIHLLSTI 173

Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +   G  T +G  H+++ +++      KM++    + +    I+ AD     +++    
Sbjct: 174 AQPKVGIVTLIGEAHLEFFKSRHEIAKGKMQI-ANGMKEGGLLIVPAD-----KIINDFL 227

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            +   V+  G       +        K  +T      D     P+ G++   NA++AA +
Sbjct: 228 PSQQNVVRFG---PDEDIFLTKLEERKDSLTFETNFLDNAIDLPVTGKYNATNAMIAAYV 284

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +  G+    + +    L +   R E+      G  I  D Y     ++ +IL+   TI 
Sbjct: 285 ALKEGVTQDKIQKAFATLELTRNRTEWKKAK-NGADILSDVYNANPTAMRLILETFSTIP 343

Query: 381 ---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               GR + V     +     + + G +         +T  NP      +I +EI     
Sbjct: 344 FNEKGRKLAVLADMKELGADSKQMHGAM---------ITSLNP------EILSEI----- 383

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
            F+   +       A E+          GK H   + V N EK    D    ++E L
Sbjct: 384 -FLYGEDMAALFAYAKEIFPP-------GKAH---YFVKNAEKDQFSDLVKAVKEAL 429


>gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
          Length = 462

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 85/467 (18%), Positives = 183/467 (39%), Gaps = 37/467 (7%)

Query: 8   YKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +  F E++N +     +Q    K N++S+D+R I    IF+A+ G   +G+ +I  A   
Sbjct: 3   HMTFDEIVNAVQGKVVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVASDN 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA   ++      +D    I   T I+ V++T+K L   A     K    ++ +TG++GK
Sbjct: 63  GASMCIIDEIKYRED---EIEKGTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGSNGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    +            +     T  +F                     +S  +  + 
Sbjct: 120 TSTKDLLAAALSS------KYKVFKTQGNF-------NNEIGLPLMIFKLDNSYDIAVLE 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  ++        +  K      TN+G  HI    +++    AK+ +  +   K S  I+
Sbjct: 167 MGMNNLNEIHRMAEAAKPDIALITNVGVSHIGNLGSRENILKAKLEI-TDFFDKNSILIV 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD--FL 303
             D+    +++    +    + + G + G  ++   +    N  + ++   GK F+  F 
Sbjct: 226 NGDN----DLLSGVKSNKFSIYTTGMENGNNLNACDIELKENFVEFSVEENGKKFEETFH 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+  + N+L+A      +G+++  + E L+ L     R + +    +   +   Y 
Sbjct: 282 VEIPGKHTISNSLLAIACGRILGMENKDIKEGLKNLQTTAMRMDLIK-GKKFNILNDCYN 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT--DD 418
              +S++  +  ++ + S R I V G     G++       +G+ +       ++T  + 
Sbjct: 341 ANPDSMKAAIDVLKNVESSRRIAVLGTMGELGEQSYKSHKEIGEYSAKNGVDLLLTFGEY 400

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
           N   E  E  ++        F +     E I+  +   L + D ++V
Sbjct: 401 NKAFE--EGFKSSTKAEYKAFDDYS---EGIKYLVNGYLKEGDTVLV 442


>gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 503

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 153/406 (37%), Gaps = 28/406 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++ A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV +T   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVER--------LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   ++     
Sbjct: 107 TGSNGKTSVKALLLSILQEAGRVEG-----TTVYATPGNRNNEIGLPLAV---IAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCR---VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   ++  G Q G  I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQAQPAQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR       S   
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSGAV 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            I   Y     S      +      G   +V G   +       + 
Sbjct: 338 LIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRELGAEGLALH 382


>gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
 gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
          Length = 460

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 144/399 (36%), Gaps = 30/399 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  VS+D+R+I +  +F+A+ G + D H F   A   GA+A++VS    ++    
Sbjct: 19  GADISIAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSKPLPVE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRS 140
                 P LVV +TR  L +  + L  +  E      LA+TG+ GK++V      I    
Sbjct: 75  -----LPQLVVSDTRIALGMMGAWLKAQMTEKYGLKTLALTGSCGKTTVKEMSAAILANK 129

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G      G          +      +P+ L   L          + + A+      +  +
Sbjct: 130 GQVLATAG----------NFNNDIGAPLTL---LRLTPEYQYAVIELGANHQNEIFYTTN 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +K       N+   H++   + Q    AK  +FE L+ +   AII  +           
Sbjct: 177 LVKPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGLV-QNGTAIINFESNDLALWQPLL 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                   S          +K+          T+       D    L G   V NAL AA
Sbjct: 236 AEHQVLTFSTDSHQADYFAEKIKITTQGLACFTMCTPIGKIDINLALAGMHNVSNALAAA 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L +++G   A V   LE +  V GR +     +R   I   Y  +  +++  +  + + 
Sbjct: 296 ALTVSLGATLADVKAGLETMANVKGRLDITEPYARLRLIDDTYNASVAAVKAAIDVLASF 355

Query: 380 TSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVT 416
              R  +        ++       +G+ A +     ++T
Sbjct: 356 EGKRYFIFGDMAELGEESDNLHREVGEYAQEKQLDCVMT 394


>gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 466

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 162/469 (34%), Gaps = 38/469 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +        +   +++  V  DSR ++ G +F A VG + DGH +  Q
Sbjct: 1   MIALSLAEIASVVGGQTHDIPDPSAQVHGPVVIDSRQVKDGSLFAAFVGERVDGHDYADQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++                  P +VV++ +  L   A  +  +    ++A+TG
Sbjct: 61  AVRAGAVAVLAQRPV-----------GVPAIVVEDVQTALGALARHVVRRLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R   + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLRRKAPTVFTPGSLNNEIGLPLTALTATEETRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G   +  D      G   N+G  HI     ++    AK  L E L P E 
Sbjct: 158 -VLEMGARGIGHISYLTDLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEAL-PAEG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ-QVTISVEGKDF 300
            AI+ ADD   + +  R      +V+  G  G   +  + V    + Q    +       
Sbjct: 216 AAILNADDPLVRAMASRTK---AKVILFGESGEADVRAENVRLTDSGQPAFMLHTPSGAS 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  I  
Sbjct: 273 EVTMRLYGEHHVSNALAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTIVN 332

Query: 361 D-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           D Y     S+   L+ +  +  GR    V G   +           +      + +    
Sbjct: 333 DAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLV 392

Query: 419 NPRSEDPEKI-RAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +   +       G      +   +   A+      L   DV++V
Sbjct: 393 AVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 441


>gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 460

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/363 (21%), Positives = 146/363 (40%), Gaps = 22/363 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I+ +++D+R I    +F+A++G   D H+F+ +AI++GA A+++      ++      
Sbjct: 28  ISIHSITTDTRKITPKCLFIALIGKNFDAHMFVNEAISKGAAALLLEKQCYPKNV----- 82

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P ++V NT   L   AS +  +    ++A+TG+SGK+SV      I +  G      
Sbjct: 83  --IPQIIVQNTTIALGKIASWIRDQTNATVIAITGSSGKTSVKEMTSSILKNCGN----- 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               TIS+F Q+       P+ L   L+   S     + + A+     ++     K    
Sbjct: 136 ----TISTF-QNLNNNIGVPLTL---LNLNKSHKYAILELGANYPKDIEYTTKITKPNIA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H+   ++      AK  +F  L  K   AI   D  Y  +  K         
Sbjct: 188 LINNIYHSHLAGFKSLFGVAQAKQEIFLGL-RKNGIAIYNKDSNYWSKWKKNLLTQKIIN 246

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +   I    +   +   +  I     +     PL G   + NAL AA + I+I I
Sbjct: 247 FSIK-KNSTIFASNITTSNQGSKFKIHSPNGEIYVTLPLLGYHNISNALAAATIAISINI 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              ++   L  L ++  R + +  N     I   Y   + S+ + +K +  I+  ++ V 
Sbjct: 306 PLEIIKIGLSSLPILKNRLQIIRLNKYKTIINDTYNANTASMIVAIKILENISGYKLFVA 365

Query: 388 FGC 390
              
Sbjct: 366 GDM 368


>gi|229817371|ref|ZP_04447653.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
 gi|229785160|gb|EEP21274.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
          Length = 513

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 120/517 (23%), Positives = 206/517 (39%), Gaps = 49/517 (9%)

Query: 8   YKDFPELIN----QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFI 60
           +    E+IN    QL    +   +     ++ D+R +    + V        G     F+
Sbjct: 15  HNLLREIINGDSWQLDTAHIDGVDTPFTNLTYDTRTVAPNTLLVC------KGRFRPEFL 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                +G  A V  S  S         +  P L+V++ RK LSL A+  Y  HPE  L V
Sbjct: 69  DGTEERGLAAYVAESDLSS-------HTTKPGLIVNDARKALSLLAAAFY-DHPERDLTV 120

Query: 121 TGTSGKSSV---ASFVQQICQR--SG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            G +G       A F Q I     +G  + F             ++ LTTP  +   + +
Sbjct: 121 IGITGTKGKTTTAYFTQSILNTYSAGRCALFSSVDNCLDGHTYAESDLTTPESLDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMR 232
                 G+ ++ +E SS     +R+ G+     +F N+  DHI    H T + YF+ K +
Sbjct: 181 RQAVDNGMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISPIEHPTFEDYFHCKRQ 240

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +           ++ AD  +   + + A  AG  V      G    + ++   + +  + 
Sbjct: 241 IIAN----SRALVLGADCDHHDLLREDAKAAGIDVTEFAMGGDAQVVTRLDPNNKEGFIA 296

Query: 293 ISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +G+           + GEF + NA  A  +    G+ ++    H  +   VPGR E 
Sbjct: 297 TISDGERSVTLEPMALDMTGEFNIVNAAAAIAIAHRAGVPASSQAMHAVQNVQVPGRMER 356

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +        +YVD+AH   S++ ++  I  +    + RI +V G  G +   +R  + K 
Sbjct: 357 I-RGGDNLLVYVDFAHNYISVKSLVDEIERVYGERNPRITLVSGTTGGKAIDRREGIVKG 415

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIEMLNK-QD 460
           AL   +  I T D+P  EDP  I  ++   +     +      R +A+  AI    +  D
Sbjct: 416 ALGRVESFIFTLDDPNFEDPTDIARQMQSYVTDPAAQTQIVMPREDAVAKAIADAREHND 475

Query: 461 ---VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              V++V GKG ET +I+         D  ++R +LG
Sbjct: 476 RFNVVLVIGKGDETRNIINGKPVPYEGDSVVVRRVLG 512


>gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
 gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
          Length = 446

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 152/409 (37%), Gaps = 35/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G           + +  +        P+ L   L      
Sbjct: 104 TGSCGKTTTRALLASVFRQCG----------NVLASEKSFNNNIGVPLTL---LRLRPDH 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE L   
Sbjct: 151 HYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGL-SS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR   V      G I +
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRL--VEQKGYRGAIII 327

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           D ++ +N L +     +     G  ++V G   +  QG      +I   
Sbjct: 328 DDSYNANPLSVSAAIAVLAKRPGHSVLVLGDMLELGQGAEQFHQEIGKR 376


>gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 442

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 149/393 (37%), Gaps = 36/393 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q+     Q   + +  VS DSR +++G +FVA+V    DGH ++ QA+ +GA A++V 
Sbjct: 8   IGQILNATTQIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLVD 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             +        I S  P ++V +T   L         +    ++A+TG++GK++      
Sbjct: 67  DRH-------QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMAS 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I         Q     T  +F  +  +           L+      V  V +     G 
Sbjct: 120 AIM------GSQYKTFKTPENFNNEIGVPL-------TLLTMPDDTEVLVVELGMDRPGQ 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                + +       T +G  HI++ +T++    AK+ + + L  + +  + Y +   + 
Sbjct: 167 LTTLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLVPYDEPLLTN 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +K+       V + G   K I+      I   Q    ++          L G + + N
Sbjct: 227 AQVKQ------NVQTFGQDIKDINSSSSKTIFTYQNTRFAIP---------LLGRYNIMN 271

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A    I + I+     E L+   +   R E + T+     I   Y     ++  +L 
Sbjct: 272 ALAAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLA 331

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            ++ I +    VV G   +  +    +   +A 
Sbjct: 332 TLKIIPATHKYVVLGDMLELGEQAASLHACLAE 364


>gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
 gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
          Length = 446

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 152/409 (37%), Gaps = 35/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G            S  + +N +  P        L      
Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLA--------SEKSFNNNIGVPLT-----LLRLRPDH 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE L   
Sbjct: 151 HYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGL-SS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR   V      G I +
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRL--VEQKGYRGAIII 327

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           D ++ +N L +     +     G  ++V G   +  QG      +I   
Sbjct: 328 DDSYNANPLSVSAAIAVLAKRPGHSVLVLGDMLELGQGAEQFHQEIGKR 376


>gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 460

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 171/452 (37%), Gaps = 52/452 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR IQ G +FVA+VG K D H F+PQ    GA A++VS      +         
Sbjct: 27  TSVNTDSRKIQPGELFVALVGEKFDAHDFVPQVAQAGAAAVIVSRLPENVE-----ALGC 81

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGLS 143
            ++ V +T   L   A          ++ +TG++GK+S    V        Q+C   G  
Sbjct: 82  GVIEVPDTLLALQQLARAYRELLNPLVIGITGSNGKTSTKDLVAAVLRKKYQVCATLGNF 141

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  IG   TI                    L          + +  + HG         +
Sbjct: 142 NNHIGLPLTI--------------------LRMEEGDNCAVLEMGMNHHGEIAVLAGIAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+G  HI+Y  +++     K  L    +P     ++ A+D +S  +  R+H  
Sbjct: 182 PDAAIITNIGVAHIEYMGSREGIAQEKGTL-AAAVPHGGVVVLNANDDFSSSIAARSH-- 238

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLC 322
             RV+  G     +      +       +++ +G+       P+PGE  V NA +AA + 
Sbjct: 239 -ARVVLAGVGEGDVVATLTESGARGSFFSLNFDGRVVVAVHLPVPGEHMVGNAALAAAVG 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT- 380
              G+    +   L ++ +  GR +      RG  +  D Y    +S+   LK +  +  
Sbjct: 298 WHFGVVPQDIAAALGEVQLTKGRVQVKF--WRGVTVLDDSYNANPDSMRAGLKTLAALQI 355

Query: 381 SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-G 435
            GR + V G     G   +   R + G  A    D           E+   I ++    G
Sbjct: 356 PGRRVAVLGRMGELGPHAESSHREVGGYAAELGVDAVF-----SVGEEAALITSQAEKSG 410

Query: 436 IPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
             G     +   A+   + E L++ D +++ G
Sbjct: 411 GSGDYRNFSSHAAVAACLTEWLHEGDAVLLKG 442


>gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Coprococcus sp. ART55/1]
          Length = 455

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 80/472 (16%), Positives = 167/472 (35%), Gaps = 44/472 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+  K+  E      +         + ++  +S+  + G +FV I+G + DGH FI  A+
Sbjct: 3   DITVKNILEATG--GVLLCGDENTVLTDICINSKEAKEGDLFVPIIGTRTDGHRFIESAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            Q A A + S   ++      + S+   + VD+T K L      +  ++   ++AVTG+ 
Sbjct: 61  -QTAAATLTSEHDNV------VVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSV 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +      +G+  F      T  ++          PI +++         V  
Sbjct: 114 GKTTTREMITAAVS-AGMKCFH-----TEGNY----NSVYGEPITVSRM---TDEYDVAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G      D  +      T +G  HI+Y  + +     K+ + +  + +    
Sbjct: 161 LELGIGEPGEMDILTDIAQPDICVITTIGVAHIEYMGSLENTRKEKLNIIKG-MGENGTL 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I  DD     V        C+V + G  +G       +          +          
Sbjct: 220 YINGDDPMLYAVKDEIP---CKVYTYGCGEGMDFRATNIRMEDGYSVYDMVHGDDVVTVK 276

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V N+LVA  +   +G+      +  E       R + +    +   I   Y 
Sbjct: 277 VGVMGLHNVRNSLVAMAVSHQLGVPYEKSSKAFENFRG--LRQKVIKLPGKYTIIDDTYN 334

Query: 364 HTSNSLEMILKNIRTI-TSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            + +S++     +  +   G+  +V       G   D+    +   +     D  IV   
Sbjct: 335 ASPDSMKASTDVLCDMKCEGKKYIVLGDMLELGEKSDEYHYEVGEYLRDKKIDEVIVI-- 392

Query: 419 NPRSEDPEKIRAEIIHGIPGF---IEKGNRIE-AIRTAIEMLNKQDVLVVAG 466
               E  +KI+  +      +   +   +  E AI   + ++  +D++++ G
Sbjct: 393 ---GEHAQKIKEALDACDTKYAKTVSFTDTEEIAI-YLMALMKPEDIVLLKG 440


>gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
 gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
          Length = 467

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 89/411 (21%), Positives = 151/411 (36%), Gaps = 30/411 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  K   +++N   I         +  V++D+R      +F A+ GN  D H ++ QAIA
Sbjct: 4   LTTKQVAQILNGQLIGDEYL---VVETVNTDTRQAVENGLFFALKGNHFDAHHYVDQAIA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         N P ++V +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCIALVVEQRMLI---------NAPQIIVADTRLALGELAKWLKAKLNPKTIAITGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+    + ++  TS                      L          +
Sbjct: 112 KTTVKEMAAKILQKLTACADEVLYTS---------GNLNNDLGVPLTLLRLTEQHKFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   +      AK  ++  L P E  AI
Sbjct: 163 ELGANHLGEIAYTTSITQPDACVVNNVAAAHLEGFGSLAGVAQAKGEIYRGL-PPEGIAI 221

Query: 246 IYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           I       A+  E+  R   +     S  ++      + V    N     +     + + 
Sbjct: 222 INQASYSSAWQTEIGSRKVQSFALYPSAEHKPVDFSAENVHLHLNGSTFMLHSPQGEIEI 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  GE  V N L A+ L +A+G D A +   LE+   V GR   +  N     I   Y
Sbjct: 282 NLPYLGEHNVSNVLAASALVMAVGADLAAIKAGLEQPVAVKGRLCPLPINRYCLLIDDTY 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +S++  ++ ++   + RI  V   G                ++AD  
Sbjct: 342 NANVDSMKSAVQVLKNYQAFRIFAVADMGELGKDSV-----ACHQEVADFV 387


>gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
 gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
          Length = 453

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 92/413 (22%), Positives = 153/413 (37%), Gaps = 28/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +      I++VS+D+R + AG +FVA+ G K D H +   A+ 
Sbjct: 1   MISVSLRQLADVLGARLV-GENLTISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDAVN 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P LVVD+TR  L + A  +  +    ++A+TG+SG
Sbjct: 60  NGAAALLVSKHLPI---------DVPQLVVDDTRLALGVMAGWVRQQSRARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G   +      T  +F  D  +                      +
Sbjct: 111 KTSVKEMAASILRQCGNVLY------TAGNFNNDIGVPL-------TLFRLTPEHDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++  A    NL   H++   + +    AK  +F  L P +  AI
Sbjct: 158 ELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFGGL-PAQGVAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I AD                   S  G+ G   +   +          +     D     
Sbjct: 217 INADSNDEARWQDVLTGKTLWRFSPQGHDGVDFYASDIRVSERGTDAVLHTPMGDIAVTL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   + NAL A  L + +G     V   LE+L  VPGR   +        +   Y  
Sbjct: 277 PLPGHHNIANALAATALALTVGASLEAVKVGLEQLQAVPGRLFPIALAPGKLLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
              S+    + +  +   R++VV      G D     R +         D  +
Sbjct: 337 NVGSMTAAAQVLAEMPGYRVMVVGDMAELGQDAQACHRQVGEAARKANIDKVL 389


>gi|327404532|ref|YP_004345370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
 gi|327320040|gb|AEA44532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
          Length = 427

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 129/382 (33%), Gaps = 27/382 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +D+R IQ G +F  + G   DG+ F  +AI QGA A VV +     +         
Sbjct: 12  TGIETDTRKIQKGSLFFCLKGLNFDGNKFAQEAIQQGAIAAVVDNPEYHIEGKT------ 65

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+T   L   A     +    I+ +TG++GK++    +  +        F  G  
Sbjct: 66  --ILVDDTLLALQNLAKHHRCQFQIPIIGITGSNGKTTSKELISVVLSTQLHVHFTSG-- 121

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   L   ++  +  + + A+  G  +  ++      G  T
Sbjct: 122 --------NLNNHIGVPLTL---LQLNTTHEIAVIEMGANKPGDIKELVEIALPTHGIIT 170

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H++  ++ +     K  LF  L           +D      +    +      S 
Sbjct: 171 NIGRAHLEGFKSLEGVIKTKTELFNFLAQNRGHIFANKEDETITSHLPSNTHNHFYNDSK 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G+ I L     +   +           D    L GE+   N L A  +    GI + 
Sbjct: 231 ELHGELISLNPFVNMTWSE-----PNYTSSDIHTNLVGEYNFINFLAAIRIGRFFGISAE 285

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
              + +        R +   T  +   I   Y     S+   L +   I +   I + G 
Sbjct: 286 NCNKAISDYQPTNNRSQVTKTE-KNTLIVDCYNANPTSMRSALSSFAKIDNHAKIFILGD 344

Query: 391 GGDRDQGKRPIMGKIALDLADI 412
             +       +  ++     D+
Sbjct: 345 MREMGDEAPAVHEEVIQQTIDL 366


>gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. m3-13]
          Length = 453

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 182/494 (36%), Gaps = 65/494 (13%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++  + Q      ++    +  VS D+R   +G +++ I+G   +GH F+  A
Sbjct: 1   MIKRTLKQIQEMAQGQPISSEYSAIVVEGVSKDTREDMSGKLYIPIIGENFNGHAFVRDA 60

Query: 64  IAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           I + GA A                 ++  ++VVD+T + L   AS    +    ++ +TG
Sbjct: 61  IEKKGAVASFWQKDQPEP------PTDLNLIVVDDTIEALQHLASSYRNQIGMKVVGITG 114

Query: 123 TSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           ++GK++    V  +        + +G  +  IG   TI S  +D                
Sbjct: 115 SNGKTTTKDMVTSVLETTFRVHKTAGNYNNHIGLPLTILSMKEDTE-------------- 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V  + +  S  G  +      K  A   TN+G  H+    +++    AK+ +  
Sbjct: 161 ------VAVLEMGMSGRGEIELLSSIAKPDAAVITNIGESHMQDLGSREGIAEAKLEIAA 214

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
            L  ++   II  D+     ++         V+  G +       K +          I 
Sbjct: 215 GL-KQDGKLIINGDEP----LLTDRVGGKTNVIPFGLKANNDYQAKDIMLKGIGTHFII- 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              ++ ++  P+ G   V NAL A  +    G+      + LE+L +   R E V T+  
Sbjct: 269 ---EETEYFIPVLGAHNVTNALAAIIVGELFGVSEENRKKGLEQLVITGMRNEVVETSGG 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
              I   Y  +  S+   L  + ++   G+ I V G     GD ++     +G+   D  
Sbjct: 326 WTVINDAYNASPTSMRAALDLLGSLDGYGKKIAVLGDMLELGDMEKTFHHEIGQYVKDKN 385

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV 464
              + T           +  EI  G    +E        N+ E  R    +L   DV++V
Sbjct: 386 VDYVFT--------FGALGMEIAKGAQEVMEPSHVKPFMNKQELTRELRPLLENGDVVMV 437

Query: 465 AG-KGHETVHIVTN 477
            G +G +   ++  
Sbjct: 438 KGSRGMKLEEVIEG 451


>gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 503

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 153/406 (37%), Gaps = 28/406 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++ A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV NT   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVER--------LLPALSVPQVVVKNTELALARIAASMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   ++     
Sbjct: 107 TGSNGKTSVKALLLSILQEAGRVEG-----TTVYATPGNRNNEIGLPLAV---IAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLCSLLGVAQTKGAIYAAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++         R++  G Q G  I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQAQPVQGRRIVRYGLQIGADITARQLQLQAGATQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR       S   
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSGAV 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            I   Y     S      +      G   +V G   +       + 
Sbjct: 338 LIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRELGAEGLALH 382


>gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis HI4320]
 gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus
           mirabilis HI4320]
          Length = 460

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 96/456 (21%), Positives = 171/456 (37%), Gaps = 39/456 (8%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +I   Q  +  I  +S+DSR I    +F+A+ G++ D H FI     +GA A++V+    
Sbjct: 19  TITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKID 78

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           ++          P ++V +TR  +   A+ +       I+A+TG+SGK+SV      I +
Sbjct: 79  VE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILR 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G + +  G          +       P+ L +            + + A+  G   + 
Sbjct: 130 HCGETLYTHG----------NLNNDIGVPLTLFRL---TPEHRFAVIELGANHIGEIAYT 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKE 255
           ++ +K  +    NL   HI+   + Q    AK  +F  L  ++  AII     D A  ++
Sbjct: 177 VNMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGL-KEQGTAIINQQSNDVALWQQ 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                       LS   Q  F +   +         T+           PLPG   + NA
Sbjct: 236 HFNSRQTQWSFSLSADSQADF-YPTNIVVNQLTTDFTLHTPEGGVAITLPLPGRHNIANA 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A+ L +++G     + + L  L  VPGR   V   +    +   Y     S+   L+ 
Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTGKIVLDDTYNANDGSMIAGLQV 354

Query: 376 IRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +   +I V       G D ++  R +         D  +      +        ++ 
Sbjct: 355 LSQLPGYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGHYSQF------ISQE 408

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             G   F  K +    +   I +L + DV+ V  KG
Sbjct: 409 NKGGEHFSFKADL---LTQLIPLLQQHDVVSVLVKG 441


>gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
 gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
          Length = 464

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 153/416 (36%), Gaps = 27/416 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I +   +L   L    +   E     +S+D+R      +F  + G K D H ++ +AI 
Sbjct: 1   MIKQTTQQLAQTLKGKLLGSGEVVAENISTDTRQAVEKGLFFVLKGEKFDAHDYVEKAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV    ++         N P ++V++TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+      Q+    T  +   D  +           L        T V
Sbjct: 112 KTTVKEMTAKILQKVTACEDQV--LYTFGNLNNDLGVP-------LTLLRLTPEHKFTVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   +      AK  ++  L      AI
Sbjct: 163 ELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGL-KTGGKAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISVEGKDFD 301
           +     Y  E  K   +   +      + K  +     + V    N  + T+     + +
Sbjct: 222 VNLAH-YYPEWQKEIGDHELQSFCYTGEDKDSYVDFWAENVELHLNGSRFTLHTPQGEIE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  GE  V NAL A  L +A+G D   V   LE+   V GR   +        I   
Sbjct: 281 INLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKENVLFIDDS 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           Y    +S++  +  ++   + RI V       G D     + +   +     D+ +
Sbjct: 341 YNANVDSMKSAVSVLKQYPAFRIFVAGDMAELGKDSPACHQEVADFVKQAKLDLVV 396


>gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
 gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 478

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 155/439 (35%), Gaps = 24/439 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR I  G IFVA+ G + DGH F+ QA  +GA   +VS  +  +  S+   +    
Sbjct: 38  VVIDSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIVSREWFSRQGSSAHEAGARY 97

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV  +T + +   A+    K    ++ + G++GK++       + +         G    
Sbjct: 98  LVTADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMTASVLRARYSVHMSEG---- 153

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
                        + + +   L  L  +    V     +H  +   L  I     G  TN
Sbjct: 154 ----------NFNNHLGVPLTLFGLREKHEVAVVEMGINHPGEMELLAEIAAPTHGMLTN 203

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSV 270
           +G +H+++ +      NA+  L+  +        +  +D+    + + A      V   +
Sbjct: 204 IGHEHLEFLRDLDGVANAETALYRYVQKSGGVVFVNREDS---RLTEAAAGIPSTVGYGI 260

Query: 271 GYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +G+    + +   +  +   T+     +        G   V NA+ AA +    G+  
Sbjct: 261 ALEGEGFWAEDIRMDNLGRALFTLCSSAGNAPVTLGFAGRHNVSNAVAAATVGFHFGLTQ 320

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVV 387
             +   LE+L    G        + G  I  D Y    +S+   L  +  +  +G+ + V
Sbjct: 321 EEIAGGLERLKPEEGWKRLEFQRAGGITIVNDTYNANPDSVRNALDLLCELPVTGKRVAV 380

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            G   +      P   +I    A +  +       E           G+       +  E
Sbjct: 381 IGDMLELGGVSSPEHEEIGRYAASLDGLDAFYTFGEQAALCCR--TAGMKCAGHFMDHGE 438

Query: 448 AIRTAIEMLNKQDVLVVAG 466
                 E L+  DVL++ G
Sbjct: 439 LQHLLHESLSPGDVLLLKG 457


>gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
 gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
          Length = 449

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 186/487 (38%), Gaps = 56/487 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +L   +   + N   +      +R +  V +D+R    G +++AI G+  DGH ++  
Sbjct: 2   LVELKLSEIASICNGSLL----GEDRLVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLET 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++      ++          P+++VD+TR+  +  A  L       ++A+TG
Sbjct: 58  ALKNGALAVLSQQDSQVR----------PLVLVDDTRQAYADIAHYLRQLFSGKLVAITG 107

Query: 123 TSGKSSVASFVQQ-------ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           ++GK+++  ++ Q       + +    ++ QIG   T+                      
Sbjct: 108 SNGKTTIKEWLSQCLAERVKVLKTEKNNNNQIGVPLTLLGLK------------------ 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V  +    S  G                +N    H +   + +     K  L  
Sbjct: 150 --KEHQVAVIETGTSFVGEIAKLAQITTPDIAIISNASGSHYEGFGSIEGIAKEKGALLT 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L   E  AI+  DD +    +       C     G  G  +  K+V       +  +  
Sbjct: 208 GLT-AEGVAILNHDDPWFDYWVGLLDKRACVSFGFG-SGADLVAKQVELFSQSSKSILCY 265

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G+++     +PG+ QV NA+      + +G+      E L +  V+  R EF   NS+ 
Sbjct: 266 QGEEYVLHLAVPGKHQVANAMAVLLALLNLGVTFESACESLSRPLVIDKRLEFQYLNSQA 325

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +   Y  +  S+E  +  + + + G+  +V G  G+  + +  I  ++  + A  A V
Sbjct: 326 LVLNDCYNASPKSVEAAIDVLMSQSQGQKWLVLGALGELGELEEKIHQQL-GEYAAFAGV 384

Query: 416 TDDNPRSEDPEKIRA---EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET- 471
           T           I A   E   G+  + E  N ++A    I+ L K++ ++V  KG  + 
Sbjct: 385 TGLISVG-PIAAIAAKAYEERGGVAVYCE--NNLQAAEF-IKPLGKENAILV--KGSRSA 438

Query: 472 --VHIVT 476
               I+ 
Sbjct: 439 QMEQIIK 445


>gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
 gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
          Length = 461

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 96/456 (21%), Positives = 171/456 (37%), Gaps = 38/456 (8%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +I   Q  +  I  +S+DSR I    +F+A+ G + D H FI     +G+ A++V+    
Sbjct: 19  NIAQNQADQLIIKSISTDSRKIDEDCLFIALAGERFDAHDFIADVKEKGSVAVLVNRE-- 76

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                  I  + P L+V +T   +   A+ +       I+A+TG+SGK+SV      I +
Sbjct: 77  -------IDVDCPQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGSSGKTSVKEMTASILR 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G + +  G          +       P+ L +            + + A+  G   + 
Sbjct: 130 HCGETLYTHG----------NLNNDIGVPLTLFRL---APEHRFAVIELGANHIGEIAYT 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +K  +    NL   HI+   + +    AK  +F  L  ++  AII  D      + +
Sbjct: 177 VNMVKPDSALVNNLFSAHIEGFGSLEGIAQAKGEIFTHL-KEQGTAIINLDSNDLP-LWE 234

Query: 259 RAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              NA     S           +  ++         T+       +   PLPG   + NA
Sbjct: 235 HHLNARQTKWSFSLSAQRNADFYPTEIAVKQFITNFTLHTPEGCVEVTLPLPGRHNIANA 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A+ L ++ G     +   L  L  VPGR   V   +    +   Y     S+   L+ 
Sbjct: 295 LAASALALSAGATLEDIRLGLSTLKAVPGRLYPVELTTGKMVLDDTYNANDGSMIAGLQV 354

Query: 376 IRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +   +I  V G   +  +        +G+ A +    +++T      E    I  E 
Sbjct: 355 LSQLPGYKIFFVAGDMAELGKDSEKCHRDVGRFAHNAGIDSVLT----VGEHSHFISDE- 409

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             G   F  K +    +   I +L + DV+ V  KG
Sbjct: 410 NQGGQHFAFKADL---LAQLIPLLQQHDVVSVLVKG 442


>gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
 gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
          Length = 462

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 160/440 (36%), Gaps = 27/440 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS D+R +    +F+ + G + DGH +I QAI QGA+A+             T    
Sbjct: 27  IESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQGAKAVFWGRQ------DQTPPEG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              + VD+  +     A     K   N++ +TG+SGK++       +           G 
Sbjct: 80  ICAIWVDDPLEAFQELAKWYLEKIQPNVIGITGSSGKTTTKDMTAAVLASRYRVYKTQGN 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +      Q           L              + +  S  G  +      K    + 
Sbjct: 140 FNNDIGLPQTILDMPEDTEQL-------------VLEMGMSDFGEIEFLSKLAKPSVAAI 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +G  H++   ++     AK+ + + L  K S      +    +++ +       +VL 
Sbjct: 187 TLIGESHMENLGSRAGIAKAKLEILKGLREKGSIIFPANEPLLEQQLEEMQAEEHFKVLP 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G     +   +   +     +   V+        P+ G + V NAL A  + +  G+  
Sbjct: 247 FGEGSSSVIQAENIQLFEDHTIFDLVKPSKQSVQLPVLGAYNVNNALAALQVGLECGVPL 306

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVV 387
              +E +++  +   R ++V     G +I  D Y  +  +++ ++++  ++ T GR IVV
Sbjct: 307 EQAIEAIQQFELTKNRTQWVD-GIHGSKILNDAYNASPIAMKSVIQSFTSVATKGRKIVV 365

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
            G   +  +  + +   I+  +    I  +     E+   +   +            + +
Sbjct: 366 LGDIRELGEQSKALHASISEVMFPEDI-QEVYLYGEEMSALFEALKTRFEASHLHYVEND 424

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
           +   IR   E L + D ++V
Sbjct: 425 KQALIRLLEEELRQNDQVLV 444


>gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
 gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
          Length = 456

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 160/456 (35%), Gaps = 52/456 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  +  +S DSR ++   +FV ++G+K D H FI QA   GA A++ S   ++      
Sbjct: 22  EEMILENISIDSRTMKGNDLFVPLIGDKVDAHRFIGQAFDNGAAAVLTSRHDAMD----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQ 138
             S  P + V++T+K L    S    +    ++ +TG+ GK++    V         + +
Sbjct: 77  --SARPWIQVEDTKKALQAIGSYYRDRLILPLVGITGSVGKTTTREMVACALSARYSVYK 134

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G  + Q+G   TIS                           +  + +  S  G     
Sbjct: 135 TPGNHNSQVGVPITIS--------------------EIAPEDEIGVIELGMSEPGELTVI 174

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K+     TN+G  HI+   TQ   +  K+ + + L  +     +  DD + K    
Sbjct: 175 ARIAKIQMAVITNIGVTHIEQLGTQDNIYREKLTIQDGLT-EGGILFLNGDDQFLKSTKA 233

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +    GCR +  G  +        V         T +   K       + G   V NA+V
Sbjct: 234 K---EGCRTIYYGTGENCDYRALNVHLEEGFPAFTAAFGQKQVPVRLAVMGSHNVLNAMV 290

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           +  +    GI      + LE       R +   T   G  +  D Y  +  S++  L+ +
Sbjct: 291 SLAVAAECGIPMEKAAKCLEAFTGFRNRQQIYQTG--GITVIDDTYNASPVSMKAGLEVL 348

Query: 377 RTITS-GRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +IT   R I V        D        +G+   +     +VT      E   +I   +
Sbjct: 349 GSITKAKRRIAVLADMKELGDNTLSYHYEIGEYIAEHPVDELVTL----GELAGEIARAV 404

Query: 433 IHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAG 466
               P    K    +   +    E L + D ++  G
Sbjct: 405 KEHAPCIQVKEFMEQDPLVSYLKEELKEGDCVLFKG 440


>gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 503

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 153/406 (37%), Gaps = 28/406 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++ A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV +T   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVER--------LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   ++     
Sbjct: 107 TGSNGKTSVKALLLSILQEAGRVEG-----TTVYATPGNRNNEIGLPLAV---IAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCR---VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   ++  G Q G  I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGIWFEQQLQAQPVQGRCIVRYGLQIGADITARQLQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR       S   
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSGAV 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            I   Y     S      +      G   +V G   +       + 
Sbjct: 338 LIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRELGAEGLALH 382


>gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 463

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 168/448 (37%), Gaps = 36/448 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  V  DSR I+ G +FVA+VG + DGH F+ +A A+GA A +V  A           
Sbjct: 23  TPVRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFARGAVAALVDRA----HVPRLPE 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++VV +T   L   A+     H   ++ +TG+ GKSS    V  +  +   +    
Sbjct: 79  GLGPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKSSTKEVVWSVASQRFRA---- 134

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
                     +  R            +   S   V  + +  +    +  RL  I +   
Sbjct: 135 ---------IRSQRSFNNEIGLPLSLMEIGSDTEVVVLEIGGAYAPGEISRLAEIARPTI 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+   H+    + +A    K  L   L P++  A++  DD     V   A    CR
Sbjct: 186 GVVTNVSHSHLARMGSLEAIAATKAELPASL-PEDGVAVLNGDD---LRVRLMADKCRCR 241

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           V+  G         +    H    ++    V+G       PL G+  V+  L    + +A
Sbjct: 242 VIRYGLAPDCEVRAENVESHGLDGISFDLLVDGGRHHVHVPLLGQHSVHTVLAGVSVGLA 301

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSG 382
           +G+      E L  L     +   +   + GG   +D  Y     S    L  +  + + 
Sbjct: 302 LGMSVE---ETLPGLRDPSIQLRLLVVPAIGGATLIDDTYNANPTSSLAALNLLAELPAR 358

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPG 438
           R I  FG   +    ++    I+GK A  + D         R    E + + +    +  
Sbjct: 359 RRIAAFGDMLELGSYEEEGHRIVGKRAAAVVDRLFTMGPRARIIADEAVASGLAPDAVVA 418

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              K + I+A++   E + + DV++V G
Sbjct: 419 VDTKQDLIDALK---ETMREGDVVLVKG 443


>gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
 gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
          Length = 446

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 150/409 (36%), Gaps = 35/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G         ++  SF  +  +              L   
Sbjct: 104 TGSCGKTTTRALLASVFRQCGN------VLASEKSFNNNIGVPLTLLRLRPDHHYALLEL 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H        G   +     K      TN G  H++   + +    AK  +FE L   
Sbjct: 158 GANHP-------GEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGL-SS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR   V      G I +
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRL--VEQKGYRGAIII 327

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           D ++ +N L +     +     G  ++V G   +  QG      +I   
Sbjct: 328 DDSYNANPLSVSAAIAVLAKRPGHSVLVLGDMLELGQGAEQFHQEIGKR 376


>gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
 gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
          Length = 489

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 92/499 (18%), Positives = 176/499 (35%), Gaps = 62/499 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L   +           I+  + DSR I  G +FVAI G + DGH F+
Sbjct: 4   MSLTEIAQAVDGRL---MPTTVPTDEPVAISAFT-DSRQIVPGSVFVAIAGERVDGHDFV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
           P+  AQGA A +V    +         +  P +VV+NT K L   A     +      P 
Sbjct: 60  PKVGAQGAVAALVDHEIA--------GAQVPQIVVENTVKALGALAKHNIERRRALESPF 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    ++ +  + G +   +G  +        +        +L     
Sbjct: 112 TVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFL----- 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    V + A+  G   +    +         +G  H+    + +    AK  +  
Sbjct: 167 --------VVEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVR 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-------IHNK 288
            L+P     I+ A+D +   V   +  A   VL  G   K        A       + + 
Sbjct: 219 GLVP-GGLTILNANDEH---VAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHP 274

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             V     G+  +    + G+  V NAL AA + + +G+    V   L  +  +      
Sbjct: 275 SFVLEDKTGRHANVTLGICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMA 334

Query: 349 VGTNSRG---GRIYVD-YAHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKR 399
           V T ++      +  D +    +S++  L  +    +G       I V G   +    + 
Sbjct: 335 VSTVTKPETSFTLIDDSFNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEH 394

Query: 400 PIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAI 449
            +    G+ A++    A+VT  +   E  + +   +  G               +  +A 
Sbjct: 395 RLHEDVGRYAVEGGADALVTVGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQAD 454

Query: 450 RTAIEML--NKQDVLVVAG 466
           R    +   ++  V+++ G
Sbjct: 455 RMVTRLATDHEGTVVLLKG 473


>gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL F2-515]
          Length = 242

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 128/259 (49%), Gaps = 26/259 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   I
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKI 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK  LF +
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 237 LLPKE-----SPAIIYADD 250
           L           A++ ADD
Sbjct: 224 LGNSYHTSNPKIAVLNADD 242


>gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
 gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
          Length = 481

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 92/475 (19%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRTLKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ Y    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGYFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHIVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSIRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQTGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQIEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|259047320|ref|ZP_05737721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036016|gb|EEW37271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 461

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 72/460 (15%), Positives = 168/460 (36%), Gaps = 30/460 (6%)

Query: 12  PELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            E+   +     Q   R   I  V+ D+R +    +FV + G + DGH +I QAI  GA 
Sbjct: 7   AEITKAVGAIDYQSAHRFETIESVAFDTRKLGPNSLFVPLKG-QTDGHDYIEQAIQAGAT 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++            T       + V++  +     A     K    ++ +TG+SGK++ 
Sbjct: 66  AVLWGKK------DLTPPEGICAIWVEDPLEAFQKLAKWYLEKVSPRVVGITGSSGKTTT 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                           +     T  +F  D              L    S     + +  
Sbjct: 120 KDMTAAAL------GARYRVYKTQGNFNNDIG-------LPQTILDMPESTEALVLEMGM 166

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    +      +    + T +G  H++   +++    AK+ +   L  K +      +
Sbjct: 167 SNFHEIEFLSKLARPEVVAITLIGESHMEQLGSKEGIAKAKLEILSGLQEKGTFIYPAHE 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +  + +    A  ++++VG   K +  K +    +     +    +      P+ G 
Sbjct: 227 DLITAGIAQAEKPATFKIVTVGEGSKELSTKNIELYSDHTAFELVTPTETVAVTLPVLGA 286

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + V NAL+A  +   + +  + ++  L    +   R ++V   +    +   Y  +  ++
Sbjct: 287 YNVSNALLAIEIARTLEVPLSDIVSALANFELTKNRTQWVKGQNGVAILNDAYNASPIAM 346

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPE 426
           + ++++  ++  +GR ++V G   +  +  + +   I+     +++A+V       E+ E
Sbjct: 347 KSVIQSFVSVEATGRRVLVLGDIRELGEHSKELHASISEVISPSEVALV---YLYGEEME 403

Query: 427 KIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   +     I       ++   I      L + D +++
Sbjct: 404 ALYDALKDQFEIAALHHYMDKEALIADLKAELKEGDQVLI 443


>gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
 gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
          Length = 427

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 166/439 (37%), Gaps = 41/439 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +D+R I  G +F A+ G   +G+ F  QA+  GA  +V+      Q    T     
Sbjct: 14  TGICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGET----- 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++ DN+ + L   AS         ILA+TG++GK++    +  +  +   ++   G  
Sbjct: 69  --ILTDNSLECLQKLASFHRQYLNIPILALTGSNGKTTTKELIHAVLSKKFNTTATKG-- 124

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   LS      +  V + A+     +      +   G  T
Sbjct: 125 --------NLNNHIGVPLTL---LSMTKETEIGIVEMGANHLKEIETLCHIAQPNYGYIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++   + +     K  L++ ++  +    + A+DA   E+ K+         + 
Sbjct: 174 NFGKAHLEGFGSLEGVIKGKTELYKHIVKSDGLLFVNANDAKQLELTKKEKR-----YTF 228

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +G    +K + A    +++ IS +G+       L G +  +N   A  +     + + 
Sbjct: 229 GNEGNDCEIKLLEAT---KELIISYQGQS--INSNLIGLYNYHNIAAAIAIGQYFKVSAT 283

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            V E +E+      R + +  N     I   Y    +S+   L N +       I++ G 
Sbjct: 284 KVKEAIEEYIPTNNRSQIIKQNGH-TIILDAYNANPSSMTAALDNFKQTVGNNKILILGD 342

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEA 448
             +  +        IA  ++   I        E+  KI+ +  H    P F       EA
Sbjct: 343 MFELGETASKEHQAIADKISSQNIGNTVYLVGENFSKIKTDNKHMHLCPTF-------EA 395

Query: 449 IRTAIEMLNKQD-VLVVAG 466
           +++ ++     +  +++ G
Sbjct: 396 LQSNLKHQKPNNATILIKG 414


>gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
 gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
          Length = 452

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 152/408 (37%), Gaps = 26/408 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L ++L    +   +  IN VS+D+R I+ G +FVA+VG + D H F   A+ 
Sbjct: 1   MISLMLSQLADELDAQLV-GNDAAINAVSTDTRTIEPGALFVALVGERFDAHDFALNAVE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS A   Q         TP L+V +T+  L      ++       +A+TG+ G
Sbjct: 60  AGATALLVSRALDTQ---------TPQLLVKDTKAALGQLGKFVHQVCQTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I    G   F      T  +F  D  +           L          +
Sbjct: 111 KTTVKEMVASIMMNKGQVLF------TAGNFNNDIGVPL-------TLLRSTPEDDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   +      AK  +++ L P  S AI
Sbjct: 158 ELGANHIGEIAYTTQLVKPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLAP-GSAAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           +  D    +   +   +   +  SV          K+   ++ +    +      F+   
Sbjct: 217 VNLDSNGGEHWQEVLADKQVKTFSVLDSTADYFAHKITMNNSGEASFELLSPMGGFEVKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  V NAL A  L   +G    +V   L  L  V GR E +    +   I   Y  
Sbjct: 277 GIIGQHNVANALAATALAFELGASIEMVQSGLRHLAKVKGRVESIALTEKITLIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +  +++     + +   G   ++ G   +       +  ++    A  
Sbjct: 337 SVPAMKAAADLLSSF-KGVRWLILGNMAELGDESLALHRQVGEHAAPF 383


>gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 489

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 91/499 (18%), Positives = 175/499 (35%), Gaps = 62/499 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L   +           I+  + DSR I  G +FVAI G + DGH F+
Sbjct: 4   MSLTEIAQAVDGRL---MPTTVPTDEPVAISAFT-DSRQIVPGSVFVAIAGERVDGHDFV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
           P+  AQGA A +V    +         +  P +VV+NT K L   A     +      P 
Sbjct: 60  PKVGAQGAVAALVDHEIA--------GAQVPQIVVENTVKALGALAKHNIERRRALESPF 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    ++ +  + G +   +G  +        +        +L     
Sbjct: 112 TVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVAE-- 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +    +         +G  H+    + +    AK  +  
Sbjct: 170 -----------MGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVR 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-------IHNK 288
            L+P     I+ A+D +   V   +  A   VL  G   K        A       + + 
Sbjct: 219 GLVP-GGLTILNANDEH---VAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHP 274

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             V     G+  +    + G+  V NAL AA + + +G+    V   L  +  +      
Sbjct: 275 SFVLEDKTGRHANVTLGICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMA 334

Query: 349 VGTNSRG---GRIYVD-YAHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKR 399
           V T ++      +  D +    +S++  L  +    +G       I V G   +    + 
Sbjct: 335 VSTVTKPETSFTLIDDSFNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEH 394

Query: 400 PIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAI 449
            +    G+ A++    A+VT  +   E  + +   +  G               +  +A 
Sbjct: 395 RLHEDVGRYAVEGGADALVTVGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQAD 454

Query: 450 RTAIEML--NKQDVLVVAG 466
           R    +   ++  V+++ G
Sbjct: 455 RMVTRLATDHEGTVVLLKG 473


>gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pseudoalteromonas atlantica T6c]
 gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 471

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 148/390 (37%), Gaps = 24/390 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  VS+D+RHI +  +F+A+ G   DGH FI QA   GA A+VVS          
Sbjct: 25  AEDAIIQGVSTDTRHINSDDLFIALSGPNFDGHKFIEQAQTSGAIAVVVSRQVETP---- 80

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   ++V +T+  L L    +  +     +A+TG+SGK++V   V  I  R G   
Sbjct: 81  -----LAQILVSDTKAALGLLGQAVKREVAPKTVAITGSSGKTTVKEMVAAILSRRGK-- 133

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                 +T  +F  D  +           L   +      V + A+  G   +  + +K 
Sbjct: 134 ----VLATKGNFNNDIGVP-------LTLLRLEAQHEFAVVELGANHLGEIAYTTELVKP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +  N    H++   +      AK  +F+ L  K+  AI  AD  +      +  +  
Sbjct: 183 DVATIVNAAAAHLEGFGSLLGVARAKSEIFKGL-GKDGLAIFNADSQFYAFWHGKYEHLR 241

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +  S   +  +     V  +       +           PLPG   V NALV+A L I 
Sbjct: 242 NQRFSTQGEADYYAQDVVLGLSGCADFLMVTPIGKVSITLPLPGIHNVSNALVSAALAIE 301

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G +   V   L+ +  V GR +    + +   +   Y     S+   +  + +   GR 
Sbjct: 302 VGANLQDVQAGLQYMAQVSGRLQVKQLSGQVKVLDDTYNANVASVNAAIDLLGSFA-GRK 360

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           I+V G   +  +  R    ++     +  I
Sbjct: 361 ILVLGDMAELGERARFYHQQVGEYAKEKGI 390


>gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 442

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 149/393 (37%), Gaps = 36/393 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q+     Q   + +  VS DSR +++G +FVA+V    DGH ++ QA+ +GA A++V 
Sbjct: 8   IGQILNATTQIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLVD 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             +        I S  P ++V +T   L         +    ++A+TG++GK++      
Sbjct: 67  DRH-------QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMAS 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I         Q     T  +F  +  +           L+      V  V +     G 
Sbjct: 120 AIM------GSQYKTFKTPENFNNEIGVPL-------TLLTMPDDTEVLVVELGMDRLGQ 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                + +       T +G  HI++ +T++    AK+ + + L  + +  I Y +   + 
Sbjct: 167 LTTLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLIPYDEPLLTN 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +K+       V + G   K I+      I   Q    ++          L G + + N
Sbjct: 227 AQVKQ------NVQTFGQDIKDINSSSSKTIFTYQNTRFAIP---------LLGRYNIMN 271

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A    I + I+     E L+   +   R E + T+     I   Y     ++  +L 
Sbjct: 272 ALAAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLA 331

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            ++ I +    VV G   +  +    +   +A 
Sbjct: 332 TLKIIPATHKYVVLGDMLELGEQAARLHACLAE 364


>gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
 gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
          Length = 460

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 144/399 (36%), Gaps = 30/399 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  VS+D+R+I +  +F+A+ G + D H F   A   GA+A++VS    ++    
Sbjct: 19  GADVSIAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKENGAKALLVSKPLPVE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRS 140
                 P LVV +TR  L +  + L  +  E      +A+TG+ GK++V      I    
Sbjct: 75  -----LPQLVVSDTRIALGMMGAWLKAQMTEKYGLQTVALTGSCGKTTVKEMSAAILANK 129

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G      G          +      +P+ L   L          + + A+      +  +
Sbjct: 130 GQVLATAG----------NFNNDIGAPLTL---LRLTPEYQYAVIELGANHQNEISYTTN 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +K       N+   H++   + Q    AK  +FE L+ +   AII  +           
Sbjct: 177 LVKPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGLV-QNGTAIINLESNDLALWQPLL 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            +      S          +++          T+       D    L G   V NAL AA
Sbjct: 236 ADHQVLTFSTDSHQADYFAEEIKITTQGLACFTMCTPIGKIDINLALAGIHNVSNALAAA 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L +++G   A V   LE +  V GR +     +    I   Y  +  +++  +  + + 
Sbjct: 296 ALTVSLGATLADVKAGLETMANVKGRLDITEPCAGLRLIDDTYNASVAAVKAAIDVLASF 355

Query: 380 TSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVT 416
              R  +        ++       +G+ A +     ++T
Sbjct: 356 EGKRYFIFGDMAELGEESDNLHREVGEYAQEKQLDCVMT 394


>gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 471

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 142/396 (35%), Gaps = 21/396 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +FVA+ G + DGH ++     QGA  ++VS  +  ++ S         
Sbjct: 31  VVIDSREVKGGELFVALKGERTDGHCYVSNVFQQGASWVMVSREWYEKEGSPQPPEGKGF 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V D+    L   AS         ++A+ G++GK++    V  +           G  + 
Sbjct: 91  IVTDDPVSGLQQLASCYRKTFSIPVVAIGGSNGKTTTKEMVASVLATGFTVQMSQGNRNN 150

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P               G+  V V  +  G  +      +   G  TN+
Sbjct: 151 HLGVPLTLLQLRPDT-------------GIAVVEVGINHPGEMEELTAIARPTHGLLTNI 197

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G +H+++         A+ +LF  L      A +  DD+  +     A        +   
Sbjct: 198 GHEHLEFLIDLDGVAAAETQLFTYLQESGGTAFVNGDDSRLRA-AGEALEGPVIYGTADL 256

Query: 273 QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            G+    + +    + +    +    +         G+  V NA+ AA + +  G+  + 
Sbjct: 257 PGRICRARDISVCRDGRISFVLCSADRTEPVTLNFTGKHNVINAVAAAAVGLHFGLPLSR 316

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFG 389
           + E LE L   PG       +S G RI  D Y   S+S+ + +  +  +   G+ I V G
Sbjct: 317 IREGLESLVPAPGWKRLEVMDSGGLRILNDTYNANSDSMRLAIDALCDLPCEGKRIAVLG 376

Query: 390 CGGD----RDQGKRPIMGKIALDLADIAIVTDDNPR 421
              +     D     I   I     D+  V  +  R
Sbjct: 377 DMLELGAAGDVEHESIGRYIHGSRVDLLYVYGEKAR 412


>gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
 gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
          Length = 467

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 161/452 (35%), Gaps = 31/452 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +  + R+  I  V  D+R +  G +FV +VG   DGH +I QA+  GA A + S+     
Sbjct: 18  YTAKDRQISITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGAVATLWSA----- 72

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D +     +  ++ VD+T + L   A+         ++ VTG++GK++       + Q  
Sbjct: 73  DPAQAPSDDLAVVFVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTTTKDMTAMVLQ-- 130

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRL 199
                +     T  ++         + I L   L  +     V  + +  S  G  +   
Sbjct: 131 ----AKYRVHKTQGNY--------NNEIGLPYTLLQMPEDTQVAVIEMGMSDFGEIKQLS 178

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +  +    + T +G  H+++  ++     AK+ +   L P         +     E+ + 
Sbjct: 179 EIAQPDIAAITLIGESHLEFLGSRAGIAQAKLEILYGLKPNGVLLYPANEPLIESEMPEI 238

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 R               V  +  +     ++E  +     P+ G + V NAL+A 
Sbjct: 239 DQPIYLRSFGFTDHADAFAYDMVEEVD-RTYFKTNLE-PNVTCTIPVLGAYNVSNALIAL 296

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   + +     +  L    +   R E++ T+     +   Y  +  S+  +LK++  +
Sbjct: 297 SVAELLDVPLEQAIFQLANFQLTANRLEWLTTHQGARLLNDAYNASPTSVLAVLKSLAAL 356

Query: 380 ---TSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
                 R I V       G    Q  R +   +A +  +   +    P      +   + 
Sbjct: 357 NLAPGQRRIAVLGDVRELGEASAQLHRSLAQGLAPESFERVYLFG--PEIASLYETLQDR 414

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 F E  +    I      L  +D+++V
Sbjct: 415 YEASHLFYEPADHSRLIAQLQADLTDKDLVLV 446


>gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
 gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
          Length = 453

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 171/451 (37%), Gaps = 47/451 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+  + DSR I+   +F+ I G K DGH FI  A  +G       +       +      
Sbjct: 26  ISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGCSTSFTETE------ALDFPEG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +++V++  + +   A     ++   ++AVTG+SGK++    +  +  +      +   
Sbjct: 80  ISVVLVESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDLIASVLSQ------KYKT 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAG 207
             T  +F         +   + + L  L  +    V      H LD  R  +  ++    
Sbjct: 134 LKTQGNF--------NNEYGIPQTLFNLQPEHEIAVIEMGMDH-LDDIRKSIGEVRPHIS 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+  +TQ     AK  +FE + P +  A++  DD Y  ++ +        V
Sbjct: 185 VITNIGTAHIEILKTQDNILAAKKEIFETMGPGD-IALLNGDDVYLNKIKE--DEEPFSV 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + VG +G+ + LK      + Q +    +G+ F F    PG   VYN L A  L     +
Sbjct: 242 VRVGIKGEDLSLKAEQVDSSAQGIRFVADGEHFHF--AYPGIHNVYNCLTAIWLGRYYQM 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
               +   L+       R + V    R   +  D Y    ++++  L  +  +      +
Sbjct: 300 THEEIQRGLDAFKPSGNRMDIVRV--REATVINDSYNANPDAMKAALDMLWDMGKSCRRL 357

Query: 387 VFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
                    G+  +     +G  A + AD+ I        E    I+     G     E+
Sbjct: 358 AVLGDMLEMGEMAESGHLEIGAYAAEKADVLIAVGP----ESKAYIKG---AGASLADER 410

Query: 443 ----GNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                +   A +   +++   DV+++ A +G
Sbjct: 411 CFWTADAEGAGKLLRKLMAPGDVILIKASRG 441


>gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 518

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/445 (20%), Positives = 163/445 (36%), Gaps = 32/445 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R +  G +FVA+ G + D H F+ QA           +          I  + P
Sbjct: 80  AISTDTRSLPPGCLFVALQGERFDAHDFLAQAH----AGGAGGAVVRAGQALPAIPGDFP 135

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +  V +T   L   A     +    + AV G++GK++    V  I    G +        
Sbjct: 136 LYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRGPA------LK 189

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +   +  +           ++ +   G        +  G        I+  AG  T 
Sbjct: 190 TEGNLNNEVGVPLTLLRLEPSHVAAVIEAG-------MNRPGEITRLTRVIQPQAGLITV 242

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  +H++   + +    A+  LF EL P E+ A++  DD     +  +A     + L+ G
Sbjct: 243 VQPEHLEGLGSLEGVAEAEGELFRELSP-EAVAVVNLDDPL---IPAQAAKGRGKRLTFG 298

Query: 272 Y-QGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +   + L +V         +T+  +G+D+       GE    NA  A  L +A+G   
Sbjct: 299 RAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALGYSP 358

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI--TSGRIIV 386
              +  LE       R   V     G  +  D Y     S++  L  +RT+    GR + 
Sbjct: 359 EECVRGLESARPYARRLNVVD-GLHGVTVVDDCYNANPASMDAALDTLRTLVTAGGRAVA 417

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIA-IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V G   +   G+      +    A  A +V    PRSE   +  + +      F E G  
Sbjct: 418 VLGDMLELGPGELEEHAALGTRAAGRAQLVAFFGPRSEKGFQAASGLGDATAHFTEVGPL 477

Query: 446 IEAIRTAIEMLNKQDVLVV-AGKGH 469
           ++        L   DV++V A +G 
Sbjct: 478 VD---WLTPRLKAGDVVLVKASRGM 499


>gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella neotomae 5K33]
 gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
          Length = 481

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRTLKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK115]
          Length = 456

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  PTAFAQGAAATLSEHPVAE----------GAYILVDDVLTAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQG--------------NYNNEIGLPYTVLHMPED 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 152 TEKIVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +   C    K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTCLEERKDSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+   +  G+  A + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIASYAALQEGVSEAAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E ++ A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKG 439


>gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
 gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
          Length = 453

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 170/461 (36%), Gaps = 41/461 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +     VS+D+RHI    +F+A+VG + D H F  QA+  GA A++V 
Sbjct: 9   LAQLTQGQLIGDDAIFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAIALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A  L             +VV +T+  L    + ++ +     +A+TG+ GK++V   V 
Sbjct: 69  RALDLP---------VAQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F  G  +           + P   +    L      G  H+   A +  L
Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIEL------GANHIGEIAYTTQL 173

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++       N+   H++   +      AK  +++ L      AI+  D    +
Sbjct: 174 -------VRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGL-SAGGVAIVNLDSHGGE 225

Query: 255 EVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              +   +      S    Q  F     V     K    +    +       + G+  V 
Sbjct: 226 YWTQVLADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVA 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A+ + +  G   A +   L  L  V GR +    +     I   Y  +  +++  +
Sbjct: 286 NAIAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIKLIDDSYNASVPAMKAAV 345

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIR 429
             + + T G+  +V G   +       +  ++    A    +  +   ++ R      I 
Sbjct: 346 DLLGSFT-GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTR------II 398

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAGK 467
           +++  G   F + G  IE I+    + N+ +    ++V G 
Sbjct: 399 SQLCGG-KHFSDHGELIEYIKQ--NLANENEACHTVLVKGA 436


>gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 445

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 158/464 (34%), Gaps = 48/464 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   +L+              +  + +DSR +Q G +FVA+ G + DGH FIPQA+A
Sbjct: 2   LTLRTVADLLQTPLQGDPHLLGLPVQAICTDSRQLQPGSVFVALRGERFDGHNFIPQALA 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++     +            P   V +T       A     + P +++A+TG++G
Sbjct: 62  RGAVAVISQRPVAG-----------PHFQVSDTLAAYQRIARGWREQFPPSVVAITGSAG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +     R G          T+     ++         L   L          +
Sbjct: 111 KTTTKEMLAAALSRYG----------TVLKSEANHNNDIGVAQTL---LQMRPEHQFVVL 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +     G  +      +      T++G  HI    ++ A   AK  L +EL   +  A+
Sbjct: 158 EMAMRGPGEIRRLAQMAQPTHALITHIGTAHIGRLGSRAAIAAAKCELLQEL--GQGVAL 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D     +   A     + L+ G          +    + Q  T++VEG       P
Sbjct: 216 LNGEDPLL--LSTAASLWSGQTLTYGLDQGD-----LRGEWDPQAQTVTVEG--LTLPVP 266

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG     N +       ++G+D   + E +     + GR   +            Y  +
Sbjct: 267 LPGRHHALNWMGVLAALRSLGLDWERLREPIALPTPLEGRNRHLKLAGDVEIWDETYNAS 326

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPR 421
             ++   L  +      R   + G   +  +    +  ++    A    D  ++      
Sbjct: 327 PEAMIAALHLLAQTPGKRRWAILGPMRELGEHAPQLYAEVGRAAAPLGLDRILLL----- 381

Query: 422 SEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
             DPE     ++   P    +      E +   +  +   D L+
Sbjct: 382 --DPEGEMQPLLDQKPAAQTERCEEVSELLEILLHHVQAGDRLL 423


>gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 473

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 103/458 (22%), Positives = 182/458 (39%), Gaps = 34/458 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++
Sbjct: 7   DAAAWMAGAHLAGPDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS   +    +    +N  +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 67  VSRPPA----ATLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 122

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I  ++     ++      ++            I L   L  L++Q    V     +H
Sbjct: 123 ISAIFAQAVGEDARLATAGNFNN-----------DIGLPLTLFRLNAQHKLAVLELGMNH 171

Query: 193 GLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +   L  I +       N  R+H ++  + +A       +   L P +  A+   D A
Sbjct: 172 PGETAVLAAIAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAAL-PADGVAVYPRDAA 230

Query: 252 YSKEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              E     +A     RVL  G +   +    V      Q++ +   G+ F    PL G 
Sbjct: 231 NGGEFAPVWQAAAGSRRVLDFGIEAGAV-TGTVVDTAEGQRIDVQAPGQRFAITLPLLGL 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
               NAL A    +A G+   ++ + L     V GR +     + GG +  D Y    +S
Sbjct: 290 HNARNALAATACALAAGVAPEVIAQALGNFAPVKGRLQR-KQGTHGGLVIDDTYNANPDS 348

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIA-LDLADIAIVTDDNPRSEDP 425
           +   +  + T+ + R +V+   G    QG      +G  A     D  + T +  R    
Sbjct: 349 MRAAIDALATLPAPRWLVLGDMGEVGSQGPAFHEEIGAYARTRGIDAVLATGELARH--- 405

Query: 426 EKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQ 459
                    G   F    + IE    AI  A  +L K 
Sbjct: 406 --TVDAFGAGAQHFASAEDLIEHGLGAIAPAATVLVKG 441


>gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
 gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
          Length = 478

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 101/458 (22%), Positives = 181/458 (39%), Gaps = 34/458 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++
Sbjct: 12  DAAAWMAGAHLAGPDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVL 71

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS   +    +    +N  +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 72  VSRPPA----ATLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I  ++     ++      ++            I L   L  L++Q    V     +H
Sbjct: 128 ISAIFAQAVGEDARLATAGNFNN-----------DIGLPLTLFRLNAQHKLAVLELGMNH 176

Query: 193 GLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +   L  I +       N  R+H ++  + +A       +   L P    A+   D A
Sbjct: 177 PGETAVLAAIAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAAL-PANGVAVYPRDAA 235

Query: 252 YSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              E  +  +A     RVL  G     +    V    + Q++ +   G+ F    PL G 
Sbjct: 236 NGGEYARVWKAAAGSRRVLDFGMDAGAV-TGTVVDTADGQRIEVQAPGQRFVITLPLLGL 294

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
               NAL A    +A G+   ++ + L     V GR +     + GG +  D Y    +S
Sbjct: 295 HNARNALAATACALAAGVAPEVIAQALGNFAPVKGRLQR-KQGTHGGLVIDDTYNANPDS 353

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDP 425
           +   +  + T+ + R +V+   G    +       +G  A     D  + T +  R    
Sbjct: 354 MRAAIDALVTLPAPRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARH--- 410

Query: 426 EKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQ 459
                    G   F    + IE    AI  A  +L K 
Sbjct: 411 --TVDAFGPGAQHFASAEDLIEHGVPAIAPAATVLVKG 446


>gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 472

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/469 (19%), Positives = 181/469 (38%), Gaps = 39/469 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI+ +  F +       + VS DSR + AG +F  I G+  DGH F   A AQGA 
Sbjct: 6   DKQALISAMDGFTVGCLPEIFSGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHAYAQGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV    +        +   P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLVV----AQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q  +  G     +               +  +   +   L+ +       +    
Sbjct: 122 KEALKQALETVGKVHANL--------------ASLNNCWGVPLTLARMPIDSDYGIFEIG 167

Query: 190 SSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H    +  +  +       T +   H+++ +  +   +AK  +FE L  K   A++ A
Sbjct: 168 MNHKNEIRPLVKLVCPHVVLITRIAAGHMEFFKDLEEVADAKAEIFEGL-DKNGIALLNA 226

Query: 249 DDAYSKEVMKRAHNAGCR-VLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD +   ++K+A   G + + S G        +K+V  + N   + +  + KD       
Sbjct: 227 DDHFFSYLLKKAKQCGVKEIRSFGRSNSADYQVKEVHLLENCSCMVVHFDQKDMMIKIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRI-YVDYAH 364
           PG+  V N L     C  +  D A V   L +  +  GR      + S GG    +D ++
Sbjct: 287 PGQHMVQNGLSVLAACDTVCADLAHVTLALGRFSLQKGRGALYKLSLSNGGMFHLIDESY 346

Query: 365 TSNSLEMI-----LKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +N + M      L        GR I +       G   ++  R ++  I +  AD+  +
Sbjct: 347 NANPVSMRTALDLLATGPIGVGGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFL 406

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  ++   + +++   +  +    N  E +      ++  D++++
Sbjct: 407 -----VGKEMGVLASDLSAYVTVY-HAENIEEIVPLVFSEISNGDLIMI 449


>gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 255

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 13/239 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
           + + +++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +      
Sbjct: 19  KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAK 78

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q  
Sbjct: 79  FAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G     +    Q+   TT S I + + L+     G    ++E SSHGL Q
Sbjct: 139 NLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           +R + +      FTNL RDH+DYH+T + Y  AK RLF EL       ++ ADD   +E
Sbjct: 199 YRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSEL--DTKAQVLNADDEVGRE 255


>gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 511

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 170/484 (35%), Gaps = 58/484 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + DL  K+  +++   S+  +   + ++   V  DSR +  G +F+   G K DGH F  
Sbjct: 1   MIDLTLKEIADIVGG-SLDSVDDPDARVTGFVEFDSRKVAPGGLFLCFPGAKVDGHDFAE 59

Query: 62  QAIAQGAEAIVVSSAYSLQ-----------------DFSATIRSNTPILVVDNTRKFLSL 104
           +AI QGA A++ +    +                  D  A     +   VV    + LS 
Sbjct: 60  KAIEQGAVAVLAAREVGVPAIVVQPTGRIEGDGANADIYANDADGSAAAVV----RALSD 115

Query: 105 FASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            A  +  K    H  +I+ VTG++GK+S    +  I +  G +    G  +         
Sbjct: 116 LAHYVTTKLTSEHDLSIIGVTGSAGKTSTKDLIATILRNDGETVAPPGSFNNEIGHPYTA 175

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                   YL   LS             A   G  +H  D      G   N+G  H+   
Sbjct: 176 LRCDVDTKYLVAELS-------------ARGIGHIKHLTDIATPRIGVVLNVGTAHLGEF 222

Query: 221 QTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKF 276
            +++    AK  L E L  + +   A++ ADD +   + KR         S      G  
Sbjct: 223 GSRENIAIAKGELVESLPDVSEGGVAVLNADDPFVAAMAKRTTAKVVTYSSANPPAVGAD 282

Query: 277 IHLKKVCAIHNKQ-QVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +   +   +  +   T+   G K       + G  QV N+L AA   I  G+    V +
Sbjct: 283 YYATNITLDNVARPSFTLHAPGVKPVSVTLQVFGVHQVSNSLAAAAAAIEAGLSVESVAD 342

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFG 389
            L            V T + G  I  D Y    +S+   +  +   TSGR     I V G
Sbjct: 343 SLSGHRNASAHRMDVHTRADGVTIINDSYNANPDSMRAAIAALGYTTSGRPDARSIAVLG 402

Query: 390 CGGDRDQGKRPIMGKIALDLADI----AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
             G+           +  +LA       IV  +    E      AE   GI   + + + 
Sbjct: 403 EMGELGDDAIEEHYSLGAELAKFDVHTLIVVGETANGEAMASAAAE--RGINTMVSR-DI 459

Query: 446 IEAI 449
            EAI
Sbjct: 460 DEAI 463


>gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar
           Abortus 2308]
 gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis bv. 5 str. 513]
 gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 9 str. C68]
 gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin
           Cpn60:Cytoplasmic peptidoglycan synthetases,
           C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus
           2308]
 gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis M5-90]
          Length = 481

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRTLKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 458

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 150/441 (34%), Gaps = 34/441 (7%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S DSR I+ G +F A+ G + DGH ++  A+ +GA A VVS       F A       +L
Sbjct: 28  SIDSRTIKPGELFFAVKGERLDGHDYVQAALDRGAVAAVVSRE-----FPARFNGTRNLL 82

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           V D+    L   A  +       ++ VTG++GK++    +  +           G     
Sbjct: 83  VADDPLLALHRLAEMVRSLWHHPVVGVTGSAGKTTTKECIAHVLASKLKVLKSEG----- 137

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                +       P+ L   L       +  + +  S  G         +   G  TN+ 
Sbjct: 138 -----NLNNHFGLPLQL---LKVEPEHEIAVIEMGMSHAGEIAALAKLAQPNTGVVTNVA 189

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             H++   +      AK  L   L P+   A++ ADD +  +  +  H        V   
Sbjct: 190 PVHLENFDSIAGIARAKYELIAAL-PRGGCAVLNADDEFVSQFGRDFHGTVLM-FGVKRA 247

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             F             +  +    K +    PL GE  VYNAL A  + +  GI     +
Sbjct: 248 ADFRAENVEMLGAAGSKFDLRFREKGYPAEMPLIGEHNVYNALAAVAVGVHHGIAIESAI 307

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
             L+ L     R E V     G  +  D Y     +L  ++  +  + + R IV+ G   
Sbjct: 308 ASLKTLKPADKRGEVVEIA--GATVVNDCYNSNPKALNAMVDALAKMPAQRRIVIAGEML 365

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR----IEA 448
           +       +       +  I     D+        +   ++ G      +        EA
Sbjct: 366 ELGPEGEHLHRDSGKHMKGIV----DHLVG--VRGLAQAMVEGAKSAGVEAEFVATPEEA 419

Query: 449 IRTAIEMLNKQDVLVV-AGKG 468
                  +   D +++ A +G
Sbjct: 420 GDWLAANIRPGDAVLLKASRG 440


>gi|227497876|ref|ZP_03928059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832708|gb|EEH65091.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 522

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 120/501 (23%), Positives = 200/501 (39%), Gaps = 48/501 (9%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P    E  ++ V  D+R I  G + V + G +     ++  A  QG  A V    YS 
Sbjct: 44  VDPDHLPELWLSSVVYDTRMITPGALLV-VKG-RFK-EDYLLPAQEQGMVAYVAEREYSS 100

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQI 136
                   +  P L+V +  + +SL A+ LYG HPE  L + G +G       A  V  +
Sbjct: 101 -------LTTCPGLIVTDALEAMSLLAAELYG-HPERELTIVGITGTKGKTTTAHLVHAV 152

Query: 137 CQR---SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +      + F                LTTP      + +      G+TH+ +E SS  
Sbjct: 153 LSQVTGGRSAMFSSNHLCLDGRTFTPAVLTTPESADSLRMMRQALDAGMTHLVMEVSSQA 212

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               R+ G+    G F N+G+DHI    H T + YF  K  L           ++ AD  
Sbjct: 213 YKLKRVFGLTFDVGVFLNIGQDHISLVEHPTFEDYFFCKRELIRH----SRQLVLNADTD 268

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------DFLFP 305
           Y   + + A  AG R L+V  +        +      +  T+   G++            
Sbjct: 269 YHGLLTEEARLAGARTLTVSREDGD-----LILTQEGKGFTLRYHGQEVAGSADQPMRLR 323

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVL-EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           L G F   NA  A  + +++G  +       LE++  V GR E +  ++ G   YVD+AH
Sbjct: 324 LAGAFNQDNAAAAVAVALSLGSPAGSPQLRALEQVQ-VSGRMERL-VSADGVVGYVDFAH 381

Query: 365 TSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              S   +L  +  +      RII+V G  G +   +R  +   A    D  I T+D+  
Sbjct: 382 NHLSTSSLLDEVERVYGRENPRIILVSGSTGGKAVNRRQGIVTAANGRVDSFIFTEDDQD 441

Query: 422 SEDPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNK----QDVLVVAGKGHETVH 473
            E+  +I  ++   +            R +AI  A+    +    ++V++V GKG E  +
Sbjct: 442 RENATQIARQMRGYVTDTEASTQIVMPRAKAIEAAVGQAREYPGRRNVILVIGKGDEVYN 501

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           +V   ++    D  ++R +LG
Sbjct: 502 VVNGVKQPYEGDAVVLRRLLG 522


>gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
 gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
          Length = 481

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/475 (19%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRTLKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGMPGRHIVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      I   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTIPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|308234230|ref|ZP_07664967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|328943512|ref|ZP_08240977.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|327491481|gb|EGF23255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
          Length = 580

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 117/522 (22%), Positives = 206/522 (39%), Gaps = 66/522 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              +  IN + S+S + Q   IFV   G       ++  A+ +GA A +  + ++    +
Sbjct: 54  AAADSLINGLDSNSLYSQKHHIFVC-KGAAFK-PEYLQDALKKGATAYMCDNTHAQALRT 111

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASFVQQICQRSG 141
                +   +VV+N R  ++  A   +G     ++ V  T  K     A  ++ I     
Sbjct: 112 YC--PHAVQIVVNNIRLAMAQAAPLAWGHPDTRLITVGITGTKGKTTTACMIKSILDARA 169

Query: 142 LSSF--------QIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                        IG   +I+++     +++  TTP      + L   +  G+TH+ +E 
Sbjct: 170 QRKHICTSQGKSPIGLMGSITTYDGILNEESTNTTPEAPDFWRHLHNAAESGITHMVMEI 229

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           SS  L  HR+DG+ L    F N+  DHI    H T + YF +K+ +F       + A++ 
Sbjct: 230 SSQALKHHRVDGLHLDVALFLNISPDHISKVEHPTFEDYFLSKLMIFS----MANAAVMN 285

Query: 248 ADDAYSKEVMKRAHN-----------AGCRVLSVGYQ-------------------GKFI 277
            D  + + +   AH            A  R+ +   Q                      I
Sbjct: 286 LDADHFEAIYAHAHACSPLLVCGRVHAQRRLEAYETQFLSDKKVASTLKAALNRTLPADI 345

Query: 278 HLKKVCAIHNKQQVTIS----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
               +       Q +         +  DF  PL G F V NAL A      + ++++ + 
Sbjct: 346 AAHDIRPQGCGLQFSCDEAHNANAQQRDFFVPLHGTFNVDNALCAVACADLLHVNTSDIQ 405

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGG 392
           + L   H V GR EF+ T+++  +  VDYAH   S      +        +II +FG  G
Sbjct: 406 QGLANTH-VAGRMEFIPTHTQNIQGIVDYAHNKLSFRCFFSDLAHEFPHYKIIALFGAPG 464

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAI 449
            +   +R  + + A   AD  ++T+++P  E  + I  E+   +P    +  + NR  AI
Sbjct: 465 GKAFDRRRDLVEEAAKWADTIMLTEEDPGHERVQDICNEMAKHMPKGQKYYIECNRAAAI 524

Query: 450 RTAIEML---NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
             A+E+      + ++ + GKG ET     +       D DI
Sbjct: 525 EKAVELANCSQAKTLICMLGKGDETTQHEQDRYVSCLPDKDI 566


>gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
 gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
          Length = 453

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/466 (18%), Positives = 177/466 (37%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +         +     T  +F                 L   S+  V  
Sbjct: 118 GKTSTKDLVAAVLSD------KYKVFKTKGNF-------NNEIGLPLMILELDSTYDVAI 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G  +   +      G  TN+G  HI+  +T++    AKM +        +  
Sbjct: 165 LEMGMRGLGQIRELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   DD      +     A  +++  G    F I  K +       + T+    K+ +F 
Sbjct: 225 VCGNDD-----FLGALPEAEYKIVKTGVGENFEIGAKNIALEELSSKFTVYDGEKEEEFS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             +PGE  + N ++   +   +G+    +   L  +     R E +     G  I  D Y
Sbjct: 280 LDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLNNIEATSMRLELI--KKDGFSILNDCY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA-LDLADIAIVTDD 418
             +  +++  +  I+ I   R I V G       + +     +GK A  +  +  +   D
Sbjct: 338 NSSPVAVKSAIDVIKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E I+     G   +    N+ E I   + ++ + D+++V
Sbjct: 398 FS-----ENIKEGYGEGCTVY---KNKEELINDLLNIICEGDIILV 435


>gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
 gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
          Length = 481

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRTLKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMILK----NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHLTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 460

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 184/482 (38%), Gaps = 37/482 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L  K   E+++   +    +   ++  V  DS+ I+ G +FV I+  K DGH ++ +
Sbjct: 7   LIQLHLKKLEEVVDGEGLQ-ESFHHLEMQGVCIDSKKIKEGNLFVPIIRVK-DGHDYVKE 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI  GA A +   +Y       T     PI+ VD+T   L   A          ++ +TG
Sbjct: 65  AIDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITG 118

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++V   +  I   +       G  ++                +L            
Sbjct: 119 SNGKTTVKDIISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILE--------- 169

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +  S  G  ++     +      T +G+ H++   +++    AK+ + + L  +E 
Sbjct: 170 ----MGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSREEISKAKLEIIDGL-KEEG 224

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   D+     + ++ +       S G +     L       ++  V   +      +
Sbjct: 225 LLLYNGDETL---LSRKNNVLVLECKSFG-EKDTNDLFPTNVQLDEYGVHFKLNDSKIQY 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G+  + N +V   +     + +  + + L ++++   RF+F+   +    I   +
Sbjct: 281 DVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQFLTAKTGFTIINDAW 340

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDD 418
             + +S++  ++ ++ +    + I+V G   +     +     +GK+        + T  
Sbjct: 341 NASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKAAETYHREIGKMLNQENISYVFT-- 398

Query: 419 NPRSEDPEKIRAE-IIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG-KGHETVHIV 475
               E  E +  E +     G ++  N    I    ++++ K+DV+++ G +G     IV
Sbjct: 399 --YGEMAEIVAEEAMKTYATGQVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEEIV 456

Query: 476 TN 477
            N
Sbjct: 457 QN 458


>gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. 83/13]
 gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
 gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
          Length = 481

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRTLKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHIVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
 gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
          Length = 452

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 152/411 (36%), Gaps = 29/411 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + +++     E ++   I     ++  I +VS+D+R I+ G +FVA+VG + D H F   
Sbjct: 1   MINMMLSQLAEYLDGQLI----GQDVAIEQVSTDTRTIEPGSLFVALVGERFDAHDFASN 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++VS A            +TP L+VD+T+  L      ++       +A+TG
Sbjct: 57  AVEAGASALLVSKALDC---------STPQLLVDDTKLALGKIGQFVHQLCQTPTVAITG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++V   V  I    G   F      T  +F  D  +           L        
Sbjct: 108 SCGKTTVKEMVASIMMNKGQVLF------TAGNFNNDIGVP-------LTLLRSTPEDDF 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+  G   +    ++       N+   H++   +      AK  +++ L P  S
Sbjct: 155 AVIELGANHIGEIAYTTQLVQPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLKP-GS 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD 301
            AI+  D    +   +   +      SV         + +      +    +      F 
Sbjct: 214 VAIVNLDSHGGEYWQQVLADKRVVHFSVSDDSADFFARNITMSTAGEASFELVSRQGTFS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+  V NAL A+ L   +G    +V   L+ L  V GR E V    +   I   
Sbjct: 274 VELGIIGQHNVANALAASALAFELGATIEMVQSGLKHLAKVKGRVESVSLTDKITLIDDS 333

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           Y  +  +++     + +   G   ++ G   +       +  ++    A  
Sbjct: 334 YNASVPAMKAAADLLSSF-GGVRWLILGNMAELGDESLALHRQVGEHAAPF 383


>gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
 gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
          Length = 452

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 166/472 (35%), Gaps = 43/472 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    ++  +  ++ V++D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSQLAGILG-GELKGDDLTLDAVTTDTRKLTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS              + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDC---------DLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMAAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTKEHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            V    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGDRKVWRFSANAADSDFTATNVHVTSHGTEFTLQTPVGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A G   A +   L  L  VPGR   V        +   Y   
Sbjct: 277 LPGRHNIANALAAASLSMAAGAPLAAIKAGLANLKAVPGRLFPVQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDD---- 418
             S+   ++ +  +   R++VV      G + +     +         D  + T      
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHLQVGNAAKAAGIDRVLSTGKLSQA 396

Query: 419 -------NPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNK 458
                       D   + A +   +        + KG+R  A+   +  L +
Sbjct: 397 ISEASGVGEHFADKTALIARLKALVEEQQMITILVKGSRSAAMEEVVRALQE 448


>gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 458

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 100/472 (21%), Positives = 181/472 (38%), Gaps = 44/472 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++        +        QW   ++  V+ D+R ++ G +FV + GN+ DGH FI
Sbjct: 3   MQLSEIAR------MTGAKNETEQWATVEVTSVAFDARELRPGALFVPLAGNR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A + +SA   Q       ++ P+L+V +        A R   K    ++A+
Sbjct: 56  NQARENGAVATLWASARDDQ------PTDFPVLLVKDPLAAYQQLAKRYLLKINPKVVAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++       +           G    I     +       P  +   LS  ++ 
Sbjct: 110 TGSNGKTTTKDMTAAVL----------GSQYNIHKTQANFNNEIGVPQTI---LSMEANT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G      +       + T +G  HI++ +T+    +AKM +  + L +
Sbjct: 157 EILVIEMGMDRPGQLHALSEIAMPDVAAITMIGEAHIEFFKTRDKIADAKMEI-TDFLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +   D+    E   R  +              ++  +V A   K Q  ++    D 
Sbjct: 216 DGLLVYDGDEPLLNE---RVGDLERETFG-SATTNTLYPIQVRAGETKTQFKLNA-WPDV 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G + V NAL A  +     I   ++ + L    V   R E++   +    +  
Sbjct: 271 AFEIPMMGAYNVNNALAAILIGQHYHIKPEVMSKALANFEVTRNRTEWLVGTAGQRMLSD 330

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV-- 415
            Y     +   +L+N     T GR I V G   +     + +   +A  LD A I  V  
Sbjct: 331 VYNSNPTAAIEVLRNFSHFETDGRRIAVLGDMLELGTASKKLHESLATVLDPAQIQEVYL 390

Query: 416 --TDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             T+  P  +    I  AE +H    + EK  + E I    E +   D++V+
Sbjct: 391 FGTEIKPLFDKLATIYPAEQLH----YFEKTQQPELITALAETIQPSDLVVL 438


>gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
 gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
          Length = 456

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 96/483 (19%), Positives = 185/483 (38%), Gaps = 61/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E  N LS    ++ +  +N++  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLSLYEVAKVVEAQNSLS----EFDDVPLNQIEFDSRKITKGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V +  K   + A     K   +++AV
Sbjct: 56  DMAFENGAVATFSEKEI----------PGKPYLLVKDCLKAFQMLAQYYIEKMRLDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    ++ +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIEAVLATTYKTYKTQG--------------NYNNEIGLPYTVLHMPED 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  I K      T +G  H+++  +++     KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIHLLSEIAKPHIAVVTLIGEAHLEFFGSREKIAEGKMQIIDG-MD 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                I   D   D Y  E           ++  G   + I++K +     K  +T +  
Sbjct: 211 SHGILIAPGDPIIDPYLPE--------NQMLIRFG-DNQEIYVKDIQ--ERKNSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D     PL G++   NA++AA +   + ++   ++E LE + +   R E+    + G 
Sbjct: 260 VLDRAITLPLSGKYNASNAMIAAYVGKLLAVEDDDIIEALENIQLTKNRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKI----ALD 408
            I  D Y     ++ +IL++  ++T    G+ I V     +       +  +I    + D
Sbjct: 319 DILSDVYNANPTAMRLILESFSSLTPENQGKKIAVLADMKELGPKSVELHQQIITALSPD 378

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIR-TAIEMLNKQDVLV 463
             D  +   ++   E   ++ +++      +     E  ++ +A+     E+L   D L+
Sbjct: 379 KIDHLVFYGND--IESLAQLASQMYPIGKVYFFKKTEDQDQFDAMANHVKEILEANDYLL 436

Query: 464 VAG 466
           + G
Sbjct: 437 LKG 439


>gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
 gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
          Length = 453

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/413 (22%), Positives = 153/413 (37%), Gaps = 28/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +   +  I+EVS+D+R +  G +FVA+ G K D H +   A+ 
Sbjct: 1   MISVSLRQLADVLGARLV-GEDLTISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVN 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P LVVD+TR  L   A  +  +    ++A+TG+SG
Sbjct: 60  DGAAALLVSKHLPI---------DVPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G   +      T  +F  D  +              +       +
Sbjct: 111 KTSVKEMTAAILRQCGNVLY------TAGNFNNDIGVPL-------TLFRLMPEHDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++  A    NL   H++   + +    AK  +F  L P +  AI
Sbjct: 158 ELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFSGL-PAQGVAI 216

Query: 246 IYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + AD           A     R       G   +   V          +     D     
Sbjct: 217 LNADSHDEARWHDALAGKTRWRFSPQARAGVDFYASDVGISERGTDFVLHTPAGDIAVTL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   + NAL AA L +A+G     V   L +L  VPGR   +        +   Y  
Sbjct: 277 PLPGRHNIANALAAAALSLAVGASLDAVKAGLAQLQAVPGRLFPIALAPGKLLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
              S+    + +  +   R++VV      G D     R +         D  +
Sbjct: 337 NVGSMTAAAQVLAEMPGYRVMVVGDMAELGQDAQACHRQVGEAARKANIDKVL 389


>gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
 gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
          Length = 457

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 161/462 (34%), Gaps = 34/462 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L +Q      Q  + + + VS+D+R I  G +FVA+VG   DGH ++ QA ++GA A
Sbjct: 7   LNQLKDQFGGLVTQ--DVEFSGVSTDTRSITKGDLFVALVGPNFDGHDYVEQAFSKGAVA 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VVS + S+   +A         VVD+TR  L+  A     +    + AVTG+SGK++V 
Sbjct: 65  AVVSRSDSVSRKAA--------WVVDDTRIALADIAKANRQRFEGPVYAVTGSSGKTTVK 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I  ++       G  +                       S      +  +   AS
Sbjct: 117 EMLHAILSQNAEVLATKGNLNN-------------DIGVPLTLFSLKDQHEIAVIEQGAS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           + G   +  D          N    H++   + Q    +K  +F  L      AII  DD
Sbjct: 164 ARGEIAYTTDISCPDVAILNNAMGAHLEGFGSLQGVVESKAEIFSRLSETGGHAIINLDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            ++   +           S     +          + +      +    +  D    + G
Sbjct: 224 PHADWWLSHTEGLPRLTFSARGDLEADLWASDLAPSDNGCFAFVLHRNDEQIDVQLQVMG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           +  V NAL AA    A G+    +   L     V GR   +  ++RG  +  D Y     
Sbjct: 284 QHNVANALAAASAVSAQGMSLKDIASGLGSFSAVSGRMRPLK-SARGALVIDDSYNANPG 342

Query: 368 SLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +  + ++    ++V+      G D  +    +  + A    D         R   
Sbjct: 343 SVNAAMDLLVSLPGESVLVLGDMAELGADAAEQHEKVGCRAAQKGTDRFWAIGALSRH-- 400

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              + A             +  E I    ++  +   +++ G
Sbjct: 401 --SVAAYDAAAGKQGQHFKSHEELIAALADIAEQGVNILIKG 440


>gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 446

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 150/409 (36%), Gaps = 35/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G         ++  SF  +  +              L   
Sbjct: 104 TGSCGKTTTRALLASVFRQCGN------VLASEKSFNNNIGVPLTLLRLRPDHHYALLEL 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H        G   +     K      TN G  H++   + +    AK  +FE L   
Sbjct: 158 GANHP-------GEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGL-SS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSEGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR   V      G I +
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVSVKGRL--VEQKGYRGAIII 327

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           D ++ +N L +     +     G  ++V G   +  QG      +I   
Sbjct: 328 DDSYNANPLSVSAAIAVLAKRPGHSVLVLGDMLELGQGAEQFHQEIGKR 376


>gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 467

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/445 (20%), Positives = 163/445 (36%), Gaps = 32/445 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R +  G +FVA+ G + D H F+ QA           +          I  + P
Sbjct: 29  AISTDTRSLPPGCLFVALQGERFDAHDFLAQAH----AGGAGGAVVRAGQALPAIPGDFP 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +  V +T   L   A     +    + AV G++GK++    V  I    G +        
Sbjct: 85  LYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRGPA------LK 138

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +   +  +           ++ +   G        +  G        I+  AG  T 
Sbjct: 139 TEGNLNNEVGVPLTLLRLEPSHVAAVIEAG-------MNRPGEITRLTRVIQPQAGLITV 191

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  +H++   + +    A+  LF EL P E+ A++  DD     +  +A     + L+ G
Sbjct: 192 VQPEHLEGLGSLEGVAEAEGELFRELSP-EAVAVVNLDDPL---IPAQAAKGRGKRLTFG 247

Query: 272 Y-QGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +   + L +V         +T+  +G+D+       GE    NA  A  L +A+G   
Sbjct: 248 RAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALGYSP 307

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI--TSGRIIV 386
              +  LE       R   V     G  +  D Y     S++  L  +RT+    GR + 
Sbjct: 308 EECVRGLESARPYARRLNVVD-GLHGVTVVDDCYNANPASMDAALDTLRTLVTAGGRAVA 366

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIA-IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V G   +   G+      +    A  A +V    PRSE   +  + +      F E G  
Sbjct: 367 VLGDMLELGPGELEEHAALGTRAAGRAQLVAFFGPRSEKGFQAASGLGDATAHFTEVGPL 426

Query: 446 IEAIRTAIEMLNKQDVLVV-AGKGH 469
           ++        L   DV++V A +G 
Sbjct: 427 VD---WLTPRLKAGDVVLVKASRGM 448


>gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 503

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/406 (20%), Positives = 151/406 (37%), Gaps = 28/406 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G +++A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYIALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV+N    L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVGR--------LLPALSVPQVVVENAELALARVAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   ++     
Sbjct: 107 TGSNGKTSVKALLLSILQEAGRVDG-----TTVYATPGNRNNEIGLPLAV---IAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++         R+L  G      I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLHISADITARQLQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLP    V NAL A GL +  GI   ++   L + H V GR       S   
Sbjct: 278 QGEAQVALPLPARHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSGAV 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            I   Y     S      +      G   +V G   +       + 
Sbjct: 338 LIDDSYNANPGS-LDAAIDALAAAPGDGWLVLGDMRELGAEGVALH 382


>gi|288940178|ref|YP_003442418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum
           DSM 180]
 gi|288895550|gb|ADC61386.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum
           DSM 180]
          Length = 487

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 109/386 (28%), Positives = 163/386 (42%), Gaps = 38/386 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA-KAL 174
             + VTGT+GK++   +++ I    G     IG         +       SP  +  + L
Sbjct: 115 RFIGVTGTNGKTTTVKYLESILAAHGRRVLSIGTLGVFLDGVRQVETGFTSPPLIELRRL 174

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            +        V +EASSH LDQ R+ GI      +TN  +DH+DYH+ + +YF AK  L 
Sbjct: 175 LHAHQDQADVVVMEASSHALDQGRVAGIPFQDAGWTNFTQDHLDYHRDEASYFAAKAHLL 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + + P             S+ V  R    G   + V                        
Sbjct: 235 DLIRPGGRLYCT------SRAVADRLAALGPTPVPVEVLEPA-----------------R 271

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +       L       N  +A  L   +   + +    +H   L  V GRF+     
Sbjct: 272 LPPEAIAAKPFLALAHNRANYALAVALAERVLDAMPTDETRQHWRHLQPVDGRFDCRVHG 331

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +R   I +D+AHT ++L+ IL  IR      R++ +FGCGGDRD+ KRP+MG      +D
Sbjct: 332 NR--AIVIDFAHTPDALDTILGAIREGFPDARVVTLFGCGGDRDRSKRPLMGAAVARHSD 389

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEM--LNKQD---VLV 463
             IVT DNPR E PE+I  +I+ G P    +    +R EAI    +       D   V +
Sbjct: 390 AIIVTSDNPRHEPPERIIDDILTGFPEDQDYSVVVDRAEAIARLFDQLAARPDDEPWVAL 449

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDII 489
           +AGKGHE   I  +G K    D + +
Sbjct: 450 IAGKGHERY-IDRDGHKTPYSDQEQV 474


>gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
 gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
          Length = 470

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 102/462 (22%), Positives = 175/462 (37%), Gaps = 37/462 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             ++I + +  P+Q    ++  +S DSR  +   +F AI G + DGH F+ QA+ +GA A
Sbjct: 9   ISQVIQRGATNPLQEL-AEVAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGAAA 67

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VV           T   +  +L VD+    L  FA     +    ++ VTG+ GK++  
Sbjct: 68  CVVKR------GEVTDPGSQLLLEVDDVNHALMQFARWYREQQSARVIGVTGSVGKTTTR 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +                T   S    +N    P  I   ++    +      + + AS
Sbjct: 122 SMIYTALSSC--------LTGIQSPANFNNEFGVPLSIAGIESSHQFA-----VLELAAS 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  +          G  T +G  H+++  T Q     K  LFE+L P    AI+  DD
Sbjct: 169 HVGEIRELAAIALPQIGVITAIGHSHLEHFGTLQQIAETKGELFEQL-PATGLAIVCGDD 227

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++  +  R      R+   G  G+   L+ V    ++Q ++  V G+ +  L P+ G  
Sbjct: 228 PFADCLASRTTARKVRI---GL-GENNDLQAVSIEQDQQGISFRVNGQQY--LLPVVGRH 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
            V  AL A  +   +GI    V E L     VPGR   +        +  D Y  + +S+
Sbjct: 282 FVNAALAAIAVARELGISEQDVAESLRNYSTVPGRCHQMQIGDW--TVIDDTYNASPDSM 339

Query: 370 EMILKNIRTITS-GRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               + +      G+ I+V       G + ++  R +   +     D+         S  
Sbjct: 340 RAACQVLHDHVGTGKRIMVLGDMLELGPETERYHRELGILVCQAGVDLLFACGKQATSVA 399

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                A + H     I   +         ++L   DV++V G
Sbjct: 400 QGARSAGMSH--TKIITAADVELLAEDVTDLLEPGDVVLVKG 439


>gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
 gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
          Length = 450

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/458 (20%), Positives = 177/458 (38%), Gaps = 48/458 (10%)

Query: 6   LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L      +L++      + +  +  ++ +++DSR I++G  F+A+ G+  +GH FI  AI
Sbjct: 5   LSLNQLAQLLSLQDNGDISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAI 64

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA  ++V         S    SN P+ +V NT +     A     +    ++A+TG+ 
Sbjct: 65  EKGAATLIVDQPV-----SVNSSSNIPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSV 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVT 183
           GK++    +  +    G          T++++         + I + K L  L       
Sbjct: 120 GKTTTKELIASVLATQGKVH------KTLANY--------NNEIGVPKTLLELDETHNSA 165

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +     G         +      TN+G  HI    ++ A   AK  L  E  P  S 
Sbjct: 166 VIEMGMRGRGEIALLAQITRPTIAVITNVGTAHIGRLGSEAAIAEAKCELLAE-SPSSSI 224

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  D     E  KR        ++ G+ G  I  + +         T+ V G DF+  
Sbjct: 225 AVLNYDHPLLTETAKRV--WQGETITYGFSGGDIVGELLDLT------TLRVNGLDFN-- 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G     N + A  +   +GID   + E + K+++  GR +     +    +   Y 
Sbjct: 275 LPLSGRHHALNFMAALAVAKILGIDWTSLQEGI-KVNLPSGRAKRYQLATDILLLDETYN 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419
               S+   L  ++     R I V G   +       +  ++   +     D   V  D+
Sbjct: 334 AGLESMLAALDLLKATPGQRHIAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDD 393

Query: 420 PRSE---------DPE--KIRAEIIHGIPGFIEKGNRI 446
           P ++         D E  +  A++I+ +   I+ G+RI
Sbjct: 394 PEAKFIAEAATAVDCECFQTHADLINRLKEVIDFGDRI 431


>gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
 gi|158449132|gb|EDP26127.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
          Length = 495

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/487 (17%), Positives = 175/487 (35%), Gaps = 48/487 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+  K+  E      +         + ++  +S+  + G +FV I+G++ DGH FI  A+
Sbjct: 43  DITVKNILEATG--GVLLCGDENTVLTDICINSKEAKEGDLFVPIIGSRTDGHRFIESAL 100

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A A + S   ++      + S+   + VD+T K L      +  ++   ++AVTG+ 
Sbjct: 101 QV-AAATLTSEHDNV------VVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSV 153

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +      +G+  F      T  ++          PI +++            
Sbjct: 154 GKTTTREMITAAVS-AGMKCFH-----TEGNY----NSVYGEPITVSRM---TDEYDAAV 200

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G      D  +      T +G  HI+Y  + +     K+ + +  + K    
Sbjct: 201 LELGIGEPGEMDILTDIAQPDICVVTTIGVAHIEYMGSLENTRKEKLSIIKG-MGKNGTL 259

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I  DD     V        C+V + G  +G       +          +          
Sbjct: 260 YINGDDPMLYAVKDEIP---CKVYTYGCGEGMDFRATNIRMEDGYSIYDMVHGDDVVTVK 316

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V N+LVA  +   +G+      +  E       R + +    +   I   Y 
Sbjct: 317 VGVMGLHNVRNSLVAMAVSHQLGVPYEKSSKAFENFRG--LRQKVIKLPGKYTIIDDTYN 374

Query: 364 HTSNSLEMILKNIRTI-TSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            + +S++     +  +   GR  +V       G   D+  R +   +     D  IV   
Sbjct: 375 ASPDSMKASTDVLCDMKCEGRKYIVLGDMLELGDRSDEYHREVGEYLRDKKIDEVIVI-- 432

Query: 419 NPRSEDPEKIRAEIIHGIPGF---IEKGNRIE-AIRTAIEMLNKQDVLVV-AGKGH---E 470
               E  +KI+  +      +   +   +  E AI   + ++  +D++++ A  G    E
Sbjct: 433 ---GEHAQKIKEALDECDTKYAKTVSFTDTEEIAI-YLMALMKPEDIVLLKASNGMNLSE 488

Query: 471 TVHIVTN 477
            V+I+TN
Sbjct: 489 VVNILTN 495


>gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
 gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
          Length = 478

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 102/458 (22%), Positives = 181/458 (39%), Gaps = 34/458 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++
Sbjct: 12  DAAAWMTGAHLAGPDAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEVVARGAAAVL 71

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A +    +    +N  +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 72  VSRAPA----ATLDVTNVAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I  ++     ++      ++            I L   L  L++Q    V     +H
Sbjct: 128 ISAIFAQAVGEDARLATAGNFNN-----------DIGLPLTLFRLNAQHKLAVLELGMNH 176

Query: 193 GLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +   L  I +       N  R+H ++  + +A       +   L P    A+   D A
Sbjct: 177 PGETAVLAAIAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAAL-PANGVAVYPRDAA 235

Query: 252 YSKEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              E     +A     RVL  G     +    V    + Q++ +   G+ F    PL G 
Sbjct: 236 NGGEYAPVWKAAAGSRRVLDFGMDAGAV-TGTVVDTADGQRIEVQAPGQRFVITLPLLGL 294

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
               NAL A    +A G+   ++ + L     V GR +     + GG +  D Y    +S
Sbjct: 295 HNARNALAATACALAAGVAPEVIAQALGNFAPVKGRLQR-KQGTHGGLVIDDTYNANPDS 353

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDP 425
           +   +  + T+ + R +V+   G    +       +G  A     D  + T +  R    
Sbjct: 354 MRAAIDALVTLPAPRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARH--- 410

Query: 426 EKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQ 459
                    G   F    + IE    AI  A  +L K 
Sbjct: 411 --TVDAFGPGAQHFASAEDLIEHGVPAIAPAATVLVKG 446


>gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 452

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 98/466 (21%), Positives = 177/466 (37%), Gaps = 35/466 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L++ L    +   +  I  VS+D+R I++G +FVA+VG + D H F  QA +
Sbjct: 1   MITLMLSQLVDVLDAQLI-GDDTAIESVSTDTRTIESGSLFVALVGERFDAHDFAGQAAS 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS A  +Q          P L+V++T+  L      ++       +A+TG+ G
Sbjct: 60  AGASALLVSKAVDVQ---------VPQLLVEDTKVALGKLGQFVHQVCQTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I  + G   +  G  +           + P   +    L      G  HV
Sbjct: 111 KTTVKEMVASIMTQKGQVLYTAGNFNNDIGVPLTLLRSQPEDDFAVIEL------GANHV 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              A +  L       +        N+   H++   +      AK  +++ L P  S AI
Sbjct: 165 GEIAYTTQL-------VNPDVAMVNNVAAAHLEGFGSMDGVKRAKGEIYQGLKP-GSVAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           +  D    +   +   +   +  S+         + V    N +   TI      FD   
Sbjct: 217 VNLDSNGGEHWREVLSDKTVKTFSLSDNSAEYKARNVTMNVNGEASFTIQTPETSFDVKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  V NAL A  L + +G  + ++   L  L  V GR E V        I   Y  
Sbjct: 277 GIIGQHNVSNALAATALSLELGATTEMIASGLANLSKVKGRVETVDLTDSIRLIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA---IVTDDNPR 421
           +  +++     + +   G   +V G   +  +    +  ++    A      ++T     
Sbjct: 337 SVPAMKAAADLLNSF-DGVRWLVLGNMAELGEESLALHRQVGEHAAPFKFEHVLT----F 391

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             D + I +++  G+  F    + IE I   +        L+V G 
Sbjct: 392 GADTKAI-SDVCQGM-HFDTHDHMIEFIEQQLSQQTGPHTLLVKGA 435


>gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
 gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
          Length = 455

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 155/474 (32%), Gaps = 52/474 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L       L+           +   + VS DSR + AG +FVA+ G + DGH ++
Sbjct: 5   MTLSQLTAALSARLV---------GADASFSGVSIDSRSVGAGELFVALAGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A+GA A +V    +          + P LVV ++R  L    +     + + ++A+
Sbjct: 56  ADVQAKGAVAALVEREVA--------NVDLPQLVVADSRLALGQLGALNRAGYDKPVVAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  I +  G      G  +                      L      
Sbjct: 108 TGSSGKTTVKEMLACILRTRGPVHATRGNLNNDLGAPLT-------------LLEIAPQH 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + AS  G  ++ +   +       N G  H+      +    AK  + E L  +
Sbjct: 155 SAAVIELGASRIGEIRYTVGLTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGL-GE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
              AI+  DD        RA        +        H   +          T+   G  
Sbjct: 214 GGTAILNLDDKAFAIWKARAAAHKVISFARSDARADFHATDIGRDARGCPSFTLHGAGAS 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + GE  V NAL AA    A+G+  + +   L  +  V GR         G R+ 
Sbjct: 274 VAVQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLNAMQPVKGR-TVAQIAPSGVRVI 332

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            D Y     S+   +  +   +   ++V+   G          +G+ A +         D
Sbjct: 333 DDSYNANPTSMCAAIDILAGFSGRTVLVLGDIG---------ELGQWAEEGHRQV---GD 380

Query: 419 NPRS--EDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             R   +    +   + H +  F         + E I            +++ G
Sbjct: 381 YARGKVDALYAVGTNMTHAVKAFGANGRHFATQAELIEAVRAETASNTTILIKG 434


>gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
 gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
          Length = 427

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 148/379 (39%), Gaps = 26/379 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ D+R +  G +FVA+ G + DGH F   AIA GA A++VS    ++          P 
Sbjct: 1   MTIDTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLLVE---------APQ 51

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +      T
Sbjct: 52  LVVKDTRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLY------T 105

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D  +           L          + + A+  G   +  D  +  +    NL
Sbjct: 106 AGNFNNDIGVPL-------TLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNL 158

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271
              H++   +      AK  +F  L P    AII AD        +  HN      S  G
Sbjct: 159 AAAHLEGFGSLAGVAQAKGEIFAGL-PANGTAIINADSNDWPHWQETLHNKRVWRFSPHG 217

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +        V         T+           PLPG   + NAL AA L +++G   A 
Sbjct: 218 AEDIDFFASDVRITPKTTYFTLHSPLGTVAIELPLPGRHNIANALAAAALAMSVGASLAA 277

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           V + L +L  VPGR   +  ++    +   Y     S+    + +  +   R++VV   G
Sbjct: 278 VRQGLTQLQAVPGRLFPIELSAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMG 337

Query: 392 GDRDQ--GKRPIMGKIALD 408
              +        +G  A  
Sbjct: 338 ELGETAVDCHRQVGDAAKQ 356


>gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
 gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
          Length = 427

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 142/379 (37%), Gaps = 26/379 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ D+R +  G +FVA+ G + DGH F             V++       S  +    P 
Sbjct: 1   MTIDTRKVTPGCLFVALKGERFDGHDFAED---------AVAAGAGALLVSKRLLVGGPQ 51

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +      T
Sbjct: 52  LVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLY------T 105

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D  +           L          + + A+  G   +  D  +  +    NL
Sbjct: 106 AGNFNNDIGVPL-------TLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNL 158

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271
              H++   +      AK  +F  L P +  AII AD        +  H+      +  G
Sbjct: 159 AAAHLEGFGSLAGVAQAKGEIFAGL-PAKGTAIINADSNDWPHWQETLHHKRVWRFAPHG 217

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +        V         T+           PLPG   + NAL AA L +++G   A 
Sbjct: 218 AEDIDFFASDVRIASQVTYFTLHSPFGTVAIELPLPGRHNIANALAAAALAMSVGASLAA 277

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           V E L +L  VPGR   +   +    +   Y     S+    + +  +   R++VV   G
Sbjct: 278 VREGLTQLQAVPGRLFPIELAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMG 337

Query: 392 GDRDQ--GKRPIMGKIALD 408
              +        +G+ A  
Sbjct: 338 ELGETAVDCHRQVGEAAKQ 356


>gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
 gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
          Length = 481

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRALKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
 gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
          Length = 457

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 147/411 (35%), Gaps = 34/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L      EL+           +     V +DSR+I  G +F+A+ G + DGH ++
Sbjct: 2   MRLSELAAAVGGELV---------GEDVLFTSVGTDSRNIVPGQLFIALRGERFDGHAYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  G          +    +         +VV NTR  L   A+    +    + A+
Sbjct: 53  LQALQSG---------AAAALVAEAQPGMAAGVVVKNTRLALGQLAAVWRNRFSIPVAAI 103

Query: 121 TGTSGKSSVASFVQQICQR-SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG++GK++V   V  I +  +G S+  +     +++                  L    S
Sbjct: 104 TGSNGKTTVKEMVASILRAEAGDSNAVLATRGNLNN----------DIGLPLTLLRLRPS 153

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              T   +  +  G  ++     +       N    H+    + +    AK  +FE L  
Sbjct: 154 HKYTVAEMGMNHFGEIRYLSQMARPTVALVNNATSAHLGGLGSVEGIARAKGEIFEGLAL 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            E  A+I ADD Y+    + A      +L+ G               +   V +      
Sbjct: 214 -EGMAVINADDLYAPLWTELAGEH--DILTFGLAKMADVTANYELRADTSYVYMKSPIGG 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   + G   V NAL A+ + IA+G     + + LE    V GR +      +   I 
Sbjct: 271 IAFNLQVAGLHNVRNALAASTVAIAMGARPESIAKGLEAFDGVDGRLQHRAGIGQALVID 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALD 408
             Y     S+   +  +      R++V+   G   +        +G+ A +
Sbjct: 331 DTYNANPASMRAAIDVLAARPGKRLLVLGDMGELGETAAAMHTEIGQYARE 381


>gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Kitasatospora setae KM-6054]
          Length = 467

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 156/452 (34%), Gaps = 49/452 (10%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           I   V +D+R I+ G +FV + G + DGH +  +A+A GA A++ +              
Sbjct: 26  ITGAVVTDNRRIEPGGLFVCVRGERVDGHDYAAKAVADGAVAVLATRPV----------- 74

Query: 89  NTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             P ++VD+    L     + +       I+ +TG+SGK+S    + Q+    G + F  
Sbjct: 75  GVPAILVDDVVVALGRLARAVVARAADVRIVGLTGSSGKTSTKDLIAQVLAGHGETVFPA 134

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +             PS  +L              + + A   G  ++         G
Sbjct: 135 GSNNNEIGHPLTALRIAPSTRHL-------------VMEMGARHKGDIEYLTGITPPTVG 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H+    +++    AK  + E L P E  A++ ADD   + +  R      RV
Sbjct: 182 LVLNIGTAHLGEFGSREGIAEAKGEMVEALSP-EGVAVLNADDPLVRAMSSRTR---ARV 237

Query: 268 LSVGYQGKFI-HLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +  G           V      + Q T+S           L GE  V NAL AA + + +
Sbjct: 238 VLFGESPDAHVRATDVRLDATGRPQFTLSTPAGSAPVRLRLYGEHHVSNALAAAAVAVEL 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS--- 381
           G+    V E L +   +      V   + G  +  D Y     S+   L+ + T+     
Sbjct: 298 GMPVDRVAEALSEAGALSRWRMEVVDRADGLTVVNDAYNANPESMRAALRALATMAGTGP 357

Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
              R   V G   +  +        I      + I         +     A +  G    
Sbjct: 358 ERRRTWAVLGEMRELGEDSLDEHDTIGRLAVRLDITKLVAVGGRE----AARMELGARNE 413

Query: 439 ------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +   +   AI      +   DV++V
Sbjct: 414 GSWGEESVLVSDADAAIELLRSQVRPGDVVLV 445


>gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           zeae Ech1591]
 gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae
           Ech1591]
          Length = 453

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/413 (22%), Positives = 154/413 (37%), Gaps = 28/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +  ++  I++VS+D+R + AG +FVA+ G K D H +   A+ 
Sbjct: 1   MIRVSLRQLADVLGARLV-GKDLIISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVN 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    ++          P LVVD+TR  L + A  +  +    ++A+TG+SG
Sbjct: 60  YGAAALLVSKHLPIE---------VPQLVVDDTRLALGVMAGWVRQQSQARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G   +      T  +F  D  +                      +
Sbjct: 111 KTSVKEMTASILRQCGNVLY------TAGNFNNDIGVPL-------TLFRLTPEHDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++  A    NL   H++   + +    AK  +F  L P +  AI
Sbjct: 158 ELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFGGL-PAQGVAI 216

Query: 246 IYADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I AD           A     R       G   +   +          +     D     
Sbjct: 217 INADSNDEARWQDVLAGKTLWRFSPQECDGVDFYAGDIRISERGTDFVLHSPMGDIAVTL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   + NAL A  L +A+G     V   LE+L  V GR   +        +   Y  
Sbjct: 277 PLPGRHNIANALAATALALAVGASLEAVKVGLEQLQAVSGRLFPIALAPGKLLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
              S+   +  +  +   R++VV      G D     R +         D  +
Sbjct: 337 NVGSMTAAVHVLAEMPGYRVMVVGDMAELGQDAQACHRQVGEAACKANIDKVL 389


>gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
 gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
          Length = 483

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/493 (18%), Positives = 165/493 (33%), Gaps = 56/493 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++                 ++  R+++ V  DSR  +   +F+AI G + DGH FI
Sbjct: 14  MSLQEIAAA-----CGGTYYGGSEFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ + QGA   V         +S         + V +  + L   A          ++ +
Sbjct: 69  PKVMEQGALCAVSEEDLGDVPYS--------YIKVASCEQALKDIAEHYRRSLDIKVVGI 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G+ GK+S    +  +  +      +     T  +F         + I L   +  L  +
Sbjct: 121 SGSVGKTSTKEMIASVLSQ------KYSVLKTEGNF--------NNEIGLPLTVFNLRKE 166

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V     S   +  RL  + +      TN+G  H++   ++     AK  +F   + 
Sbjct: 167 HEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGILKAKTEMFAY-MN 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEG 297
           +    I+  DD    ++   +   G   +  G      F          N          
Sbjct: 226 ENGTIILNGDDD---KLRGYSPENGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPN 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F     +PG   VYNAL A  +  A+G+    +   +E    + GR   +        
Sbjct: 283 SSFTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAGRNNLIRAPH--FT 340

Query: 358 IYVD-YAHTSNSLEMILKN-IRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     S++  L       T    I+  +F  G +  Q  R +         D+ 
Sbjct: 341 IIDDCYNANPTSMKASLDVLAFADTRKAAILGDMFELGENEKQMHREVGIHAVRKGIDVL 400

Query: 414 IV---------------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           I                 +    +E  E+  +   H          + + +R A E+L +
Sbjct: 401 ICIGSLMKSAADGALEYLEQQKNAEHTEETPSSSAHFPTQICHFATKADFLREAKELLKE 460

Query: 459 QDVLVV-AGKGHE 470
            D ++V A  G E
Sbjct: 461 GDTVLVKASHGME 473


>gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 456

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 103/471 (21%), Positives = 170/471 (36%), Gaps = 47/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +    F EL+  L    +   +   + VS+DSR IQ G +FVA+ G + DGH ++ Q  A
Sbjct: 2   IKSMTFSELVVPLDARLVAG-DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA   +V              ++ P LVV +TRK L+   +        + + A+TG+S
Sbjct: 61  KGAVGALVEREVQG--------ASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSS 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I +  G          T+ +   +       P+ L   L   S      
Sbjct: 113 GKTTVKEMLASILRTRG----------TVLATRGNLNNELGVPLTL---LELASEHSAAV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + AS  G     +   K      TN G  H+           AK  + E L      A
Sbjct: 160 IELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGL-NASGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++  +D       KRA N      ++      +H   +          TI+         
Sbjct: 219 VLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             L G   V NAL AA    A+G+    ++  L  +  V GR   V   S G R+  D Y
Sbjct: 279 LNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGR-AVVQIASNGTRVIDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDN 419
                S+   +  +   T   ++V+   G      +QG R +    A  ++ +  V    
Sbjct: 338 NANPASINAAVDILTGFTGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAVGP-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                       + H +  F E      ++ E I       +    L++ G
Sbjct: 396 -----------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
 gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
          Length = 468

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 144/393 (36%), Gaps = 31/393 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E+ I  + +DSR  +AG  F+A+ G + D H F+ Q + +G +  +V     L      
Sbjct: 33  PEQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDKGCQVAIVERPLDL------ 86

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   LVV +TR+ L    +    ++P+  ++A+TG+SGK++    +  I  R   + 
Sbjct: 87  ---DMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTL 143

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +                      L   +      + + AS  G   +    ++ 
Sbjct: 144 VTRGNLNNDLGVPMM-------------LLELTAEHQYAVMELGASHQGEIDYTSQLVQP 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+G  H+     ++    AK  ++   + K+  ++I A D ++  +        
Sbjct: 191 QVAGIINVGTAHLGEFGGREGICRAKSEIYAH-IAKDGTSVIPAADDFTDAIRHAVQT-- 247

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            RVLS G +G  I+  ++  +    Q  +       +   P  G   V NA  A    +A
Sbjct: 248 TRVLSFG-EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGI    ++  LE      GR  F+        I   Y     S+    + +   +  ++
Sbjct: 307 IGISLDDIVIGLELAQGAKGRLNFISHKQHLF-IDDTYNANPTSMRAAGEVLAQQSGIKV 365

Query: 385 IV---VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +V   +   G         +   +     +  +
Sbjct: 366 MVTGDIGELGDAAAVEHYRLGRDLVSQDINFVV 398


>gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Mississippi]
          Length = 456

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 163/443 (36%), Gaps = 36/443 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV       + S       P+
Sbjct: 20  ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD------EVSVPTADCGPL 73

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A+         ++A+TG++GK++    +     + G   +     + 
Sbjct: 74  VAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 133

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +          T    ++              + +  +S G         +      TN+
Sbjct: 134 LIGMPLYAANLTEDAEFV-------------VLEMGMNSPGEVDALSRIARPDVAVITNV 180

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   R++S G 
Sbjct: 181 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFGV 239

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    ++          VT    G++  +          Y+  + A +  A  ID    
Sbjct: 240 -GAGADVQIFRREEPSNPVTFRCFGEELQYNLKSGARHLAYSVAITAAVGRAFSIDLTQA 298

Query: 333 LEHLEKLHVVPGRFEFVGT-NSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-----I 385
              +E+   + G    V T   R   +  D Y     S+   ++N+  +   R+     I
Sbjct: 299 RGAMEEFVPLEGSKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVAI 358

Query: 386 V--VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +  +   G       R ++ +I     D+      +           +++          
Sbjct: 359 LGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSH------MLALYDVLPQHLRGGHFA 412

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +  EA+     ++   D ++V G
Sbjct: 413 DHGEALAHLERIIKPGDGVLVKG 435


>gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 456

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 168/449 (37%), Gaps = 38/449 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              + +IN +S+DSR +Q+G +FV + G   DGH ++ QA+  GA A +           
Sbjct: 19  AATDPEINGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQAVEHGAAACLSEEVVGGLP-- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P++ V++T + L   A  +       +LAVTGT+GK+S    +  I  +    
Sbjct: 77  ------VPVIQVEDTLQALGELARTIRSGFDGPVLAVTGTTGKTSTKEMLASILAQ---- 126

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLDGI 202
                      S          + I L   L+ LS +     + +  S HG  +   +  
Sbjct: 127 ----------GSDGLKTEGNFNNLIGLPLTLARLSDEHRWMVLELGMSQHGEIERLTEIA 176

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+G  H+      +    AK  LF  L    + A++  DDA    +      
Sbjct: 177 QPDVALITNVGAGHLAGVGNIEGVARAKGELFSGL-KAGATAVVNRDDAL---IAALPIP 232

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G RV+      +            +   T+ V         PLPG  QVYNAL AA   
Sbjct: 233 DGVRVIDFSLTYQTQVRATSIDSGQQASFTLHVGESQVRVELPLPGRHQVYNALAAAAAA 292

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-T 380
            A+G     +   L  + +  GR E V T   G  +  D Y     S++  L  +     
Sbjct: 293 HAVGCSLEQIATGLGCVKMAAGRLE-VRTLPHGATVLDDSYNANPQSMQAALSVLSDWPC 351

Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  I V G     GD  Q     +G++A   A+  +   D         ++  +  G  
Sbjct: 352 QGTKIAVLGDMLELGDVSQACHEELGRLAAQRAEQVLCYGDWAA----AVLKGVVEQGGQ 407

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           G I   +  E +      + + D ++V G
Sbjct: 408 GAICTSH-DEILDWLERQVREDDCILVKG 435


>gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK405]
          Length = 456

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 106/479 (22%), Positives = 184/479 (38%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  PTAFAQGAAATLSEHPVAE----------GAYILVDDVLTAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           KE   I+ AD     +++     A C+++  G       +        K  ++      D
Sbjct: 211 KEGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFECNFLD 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+  A + +   KL +   R E+    + G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVSEAAIAQAFSKLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREELTPADQILLKG 439


>gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
 gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
          Length = 445

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 152/455 (33%), Gaps = 50/455 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   +L+              +  + +DSR +Q G +FVA+ G + DGH FIPQA++
Sbjct: 2   LTLQTVADLLQAPLQGDPHLLGLPVQALCTDSRRLQPGSVFVALRGERFDGHDFIPQALS 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++                  P   V +T       A     +    ++A+TG++G
Sbjct: 62  KGAVAVISQRPVEG-----------PHFQVPDTLTAYQRIARAWREQFSIPVVAITGSAG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +     R G             S  +               L          +
Sbjct: 111 KTTTKEMLAAALSRYG-------------SVLKSEANHNNDIGVAQTLLRLQPEHQFAVL 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +     G  +      +      T++G  HI    +++A   AK  L +EL   +  A+
Sbjct: 158 EMAMRGPGEIRRLAQMARPTHALITHIGTAHIGRLGSREAIAAAKCELLQEL--GQGIAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D     +   A     + L+ G          +    + Q  T++VEG       P
Sbjct: 216 LNGEDPLL--LATAASLWSGKTLTYGLAQGD-----LRGEWDPQAQTVTVEG--LTLPVP 266

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG     N +       ++G++   + E L+    + GR   +            Y  +
Sbjct: 267 LPGRHHALNWMGVLAAVRSLGLNWERLQEPLDLPLPLEGRNRHLKLAGDVEIWDETYNAS 326

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDN-- 419
             ++   L  +      R   + G   +  +    +  ++    A    +   + D +  
Sbjct: 327 PEAMIAALHLLAQTAGKRRWAILGPMRELGEHAPQLYAEVGRAAASLRLERVWLLDPDGE 386

Query: 420 ---PRSEDPEK------IRAEIIHGIPGFIEKGNR 445
                 E P          + ++ G+   +  G+R
Sbjct: 387 MQPLVDEKPAAEVERFEEASALVEGLQQQVRAGDR 421


>gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
 gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
          Length = 452

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 97/467 (20%), Positives = 175/467 (37%), Gaps = 40/467 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+     E ++   I      +R IN VS+D+R+I+ G +FVA+VG + D H F  QA+ 
Sbjct: 4   LMLSQIAEALDAELI----GNDRVINSVSTDTRNIEQGALFVALVGERFDAHHFTHQAVD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS   S          + P LVV +T+  L    + ++       +A+TG+ G
Sbjct: 60  SGAGALLVSKPVS---------GDVPQLVVKDTKLALGQLGALVHQTCLTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I ++ G   F  G          +       P+ L   L       V  +
Sbjct: 111 KTTVKEMIASIMEQKGQVLFTAG----------NFNNEIGVPLTL---LRSTPEDDVAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++       N+   H++   +      AK  +++ L    S AI
Sbjct: 158 ELGANHIGEIAYTTRLVQPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGL-KAGSVAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           +  D        +   +   +  S+           +      +    +     +     
Sbjct: 217 VNLDSNGGDYWQEVLADKLVKTFSLTDSSADFTASDISLNEIGEASFVLKTPQGEIKVTL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  V NAL A  L + +G    ++   L  L+ V GR E +  N +   I   Y  
Sbjct: 277 GIIGQHNVANALAATALALELGASLEMIQSGLASLNKVKGRVELIELNQQIKLIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  +++     +     G   ++ G      D        +G+ A       ++T     
Sbjct: 337 SVPAMKAAADLLAGF-KGVRWLILGNMAELGDESLALHRQVGQHAAPFKFEYVLT----F 391

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGK 467
             D + I  E   G   F +  + I+ I+  IE  L  Q  L+V G 
Sbjct: 392 GADAKAISEEC--GGRHFEDHQSMIDFIKQQIEQHLEPQ-TLLVKGA 435


>gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis B2/94]
 gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M644/93/1]
 gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M13/05/1]
 gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M490/95/1]
 gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti B1/94]
 gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           sp. F5/99]
 gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
 gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
          Length = 481

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRTLKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLSHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2]
          Length = 471

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 152/402 (37%), Gaps = 27/402 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      + +Q+    +  ++ +++ VS+D+R I +G +++A+ G   +GH F   A  
Sbjct: 1   MITTTLSWIASQIDGK-LDGQDCEVSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAEN 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA AI+ S   ++         + P++ V++T+  L L  + +  +     +A+TG+SG
Sbjct: 60  AGASAIIASEPVNV---------SIPVVYVEDTKLALGLLGAAVKREIAPKTIAITGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I +R G         +T  +F  D  +           L          +
Sbjct: 111 KTTVKEMCAAILERRGS------VLATNGNFNNDIGVP-------LTLLRLEHHHEYAVM 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  + +K    +  N    H++   +      AK  +F+ L      AI
Sbjct: 158 ELGANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGL-GDSGTAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +  D  ++     +         S     +  F     +  +       +     +    
Sbjct: 217 VNVDSQFADFWQGKLKQKRVLTFSPMQKNEADFTAEDIIVGLDGCAAFQLCSNEGEAAIQ 276

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V N LVAA L + +G     V + L  +  V GR       S+   +   Y 
Sbjct: 277 LIIPGIHNVGNVLVAAALTMQLGATLENVRDGLLAMKQVKGRLNVKTLGSQVRLLDDTYN 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
               S+   +  + T  SG  +++ G   +  +  R    ++
Sbjct: 337 ANVASVNAAIDTLSTF-SGINVLILGDMKELGEKARFYHEQV 377


>gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 456

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 169/471 (35%), Gaps = 47/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +    F EL+  L    +   +   + VS+DSR IQ G +FVA+ G + DGH ++ Q  A
Sbjct: 2   IKSMTFSELVVPLDARLVAG-DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA   +V              ++ P LVV +TRK L+   +        + + A+TG+S
Sbjct: 61  KGAVGALVEREVQG--------ASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSS 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I +  G          T+ +   +       P+ L   L          
Sbjct: 113 GKTTVKEMLASILRTRG----------TVLATRGNLNNELGVPLTL---LELAPEHSAAV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + AS  G     +   K      TN G  H+           AK  + E L      A
Sbjct: 160 IELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGL-NASGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++  +D       KRA N      ++      +H   +          TI+         
Sbjct: 219 VLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             L G   V NAL AA    A+G+    ++  L  +  V GR   V   S G R+  D Y
Sbjct: 279 LNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGR-AVVQIASNGTRVIDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDN 419
                S+   +  +   T   ++V+   G      +QG R +    A  ++ +  V    
Sbjct: 338 NANPASINAAVDILTGFTGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAVGP-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                       + H +  F E      ++ E I       +    L++ G
Sbjct: 396 -----------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 478

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 170/488 (34%), Gaps = 82/488 (16%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  +  VS D+R +Q G +FVA+   + DGH F+  A+ +GA A +VS           
Sbjct: 20  RDFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASALEKGAAAALVSR------VPEG 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +N P+L+VD+    L         +    I+AVTG+ GK+S    ++ +   +G +  
Sbjct: 73  LPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKTSTKEMLRTVLAAAGRTHA 132

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKL 204
                         +  +  +   +   L+ + +      + +  S  G        ++ 
Sbjct: 133 --------------SEASYNNHWGVPLTLARMPADTEYGVLELGMSHPGEIAPLSRMVQP 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  T +   H +   + +   + K  +FE LLP+   A++  D A S  ++  A + G
Sbjct: 179 HVGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPR-GTAVVNGDLAVSPILIAAAKDKG 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCI 323
            RV++ G   +  H      +     V      +  F       G     NAL       
Sbjct: 238 ARVITFGETPRNHHRLTDLRVRAGVTVASGRAWRTPFHMKVASAGRHFAVNALAVIAAAD 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGT------NSRGGRIYVD-YAHTSNSLEMILKNI 376
           A+G+D A  L  L +     GR              R   +  D Y     S+   L  +
Sbjct: 298 ALGMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDAYNANPTSMAAALDVL 357

Query: 377 R---------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
                      +  GR + V G   +    +  +   +A D A                 
Sbjct: 358 ALSEPVDGVGRLARGRRVAVLGDMLELGPDEMALHAALAEDHA----------------- 400

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAI-------------------EMLNKQDVLVVAG-K 467
                +      +  G R++A+  A+                    + +  DV++V G K
Sbjct: 401 -----LTAADLIVCVGTRMKALHAALPAERAYWLATPEEILPHITRIADAGDVVLVKGSK 455

Query: 468 GHETVHIV 475
           G     IV
Sbjct: 456 GSRVSIIV 463


>gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 453

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 147/385 (38%), Gaps = 25/385 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +++ V +DSR  Q G +FVA+ G + D H F+ + +A+GA A+V          ++
Sbjct: 17  GADGEVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVARGAAALV--RDGFELAGAS 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            I++       D+TR  L   A+      P   + VTG++GK++V   +  I +    + 
Sbjct: 75  LIQAG------DDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTVKEMLAAILRAHAGAD 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             +      ++                  L          + +  + HG   +     + 
Sbjct: 129 AVLATAGNFNN----------DIGLPLTLLQLKPQHRYAVIEMGMNHHGELSYLTGLTRP 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N  R H  +  + +    AK  +FE L+     A++ ADDA     + RA    
Sbjct: 179 QVALVNNAMRAHFGHFGSTEDVARAKAEIFEGLI-DAGVAVVNADDANLP--LFRAAAGS 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R LS G     +  + +       + T+           P PGE  V NAL AA   +A
Sbjct: 236 HRQLSFGLGLADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAAAAAALA 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           + +  A + E L       GR + +  + RG  +  D Y    +S++  +  +  +   R
Sbjct: 296 LEVPLAAIAEGLSAFAGAKGRLQ-IKQSPRGLTVIDDSYNANPDSMKAGIDVLAGLPGPR 354

Query: 384 IIVVFGCGGDRDQGK--RPIMGKIA 406
             V+   G   +        +G+ A
Sbjct: 355 CFVMGDIGELGEAAPALHAEVGEHA 379


>gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
          Length = 465

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 163/474 (34%), Gaps = 37/474 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+ +KD  +L   L        +  I  +S+DSR I+ G  FV +VGN  DGH ++  A 
Sbjct: 2   DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAF 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             G +A VVS     + ++  + +  P  VV +T       A          ++AVTG+ 
Sbjct: 62  DLGIQAAVVS-----EKYNGLVPTGLPHWVVPDTLYAYQQIALLHRRNLSLPVVAVTGSV 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ I    G      G                         LS   +     
Sbjct: 117 GKTTTRELIRAILSPLGEIVSSRG-------------NENNDVGVPKTLLSGSETDAAFV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G         +      TN+G+ HI    +++    AK  +   L P     
Sbjct: 164 LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVI 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-------GKFIHLKKVCAIHNK----QQVTI 293
           I + D    K ++++      RV   G+         +   L+ +   +      Q   I
Sbjct: 224 IPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFALQDIEPDYISQIDMQNNFI 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             EG+ F    PL G     N L+A  +   +G+        L++L +          + 
Sbjct: 284 LFEGRKF--KLPLEGRHNAMNFLLALTVATELGLSIKK----LDQLKINMPIGRNRLVDC 337

Query: 354 RGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               +    Y  +  S+   L+ + +   GR   V G   +       +  K+     ++
Sbjct: 338 GQYLVLDETYNASPESVIASLELLVS-KPGRHFAVLGTMLELGSESILLHQKVLKKAIEL 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +         +   I  + I  +P         +A  + +  L+  D +++ G
Sbjct: 397 GLTGIVFVSCGEESNIIKKTIKELPNHDVVSTPKDAAMSLLPWLSPGDNILIKG 450


>gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis bv. 3 str. 686]
 gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
 gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
          Length = 481

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEVMEGRPFGNLPAGVTGISIDSRALKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 469

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 154/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I      +  +++   +    + ++  VS+D+R I++G +++A+ G   +GH FI  A 
Sbjct: 1   MITTTLSWIAGKVNGKLVNGNADTQVLAVSTDTRTIESGAVYLALKGPNFNGHDFIEAAE 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A++ S           + ++ P++ V++T++ L L  + +        +A+TG+S
Sbjct: 61  NAGASAVIASE---------NVTTSLPVISVEDTKEALGLLGAAVKQHIAPKTIAITGSS 111

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V      I  R G         +T  +F  D  +           L          
Sbjct: 112 GKTTVKEMCAAILARRGN------VLATNGNFNNDIGVP-------LTLLRLEPHHEYAV 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +  + +K    +  N    H++   +      AK  +F+ L  K+  A
Sbjct: 159 MELGANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGL-EKDGVA 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           I+  D  +++    +         S        F        +       +     +   
Sbjct: 218 IVNVDSQFAEFWQGKLKQTKTLTFSPQQKNDADFQAEDITIGLDGCASFHLVCPQGEIAI 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NALVAA L + +G +   V + L  +  V GR        +   +   Y
Sbjct: 278 QLTIPGVHNVGNALVAAALTLQVGANLENVRDGLIAMQQVSGRLNVKQLTDQVRLLDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                S+   +  + +  SG  ++V G   +  +  R    ++        I
Sbjct: 338 NANVASVNAAIDTLSSF-SGIRVLVLGDMKELGEKARFYHEQVGEYAKQKGI 388


>gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 451

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 101/462 (21%), Positives = 173/462 (37%), Gaps = 52/462 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +   + +    L   L   P     + I  + +D+R +Q G IF+A+ G K DGH F+
Sbjct: 1   MTVTATLSQLAAVLSASLVNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA A +V   Y+  D         P++ V NT       A    G+    ++ V
Sbjct: 61  EMAITRGAVAAIVDYTYNYPDL--------PVIKVSNTLNAYQELAKWWRGQFGIPVIGV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +    G      G                 + I + K L  LS Q
Sbjct: 113 TGSVGKTTTKELIAAVLGTRGKVHKTHG--------------NFNNEIGVPKTLLELS-Q 157

Query: 181 GVTHVSVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           G     +E +  G  Q        K   G  TN+G  HI+   ++QA   AK  L  E +
Sbjct: 158 GDDFAVIEMAMRGRGQIAELTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAE-M 216

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P +S A++  D+       K+  +    V+S G+ G  I  K V            VE  
Sbjct: 217 PNDSVAVLNYDNPLLMATAKQVWSG--EVISYGFSGGDIQGKLVDYQ--------KVEVG 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G     N L A  +   +G+D  L+   +  + +  GR +          +
Sbjct: 267 GMTLPLPLAGVHNGSNFLAALAVAKVLGVDWKLLEAGI-NVTMPQGRSQSWKLPRDIMIL 325

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAI 414
              Y     ++   L+ +      R I V G   +  +    +  ++   +     D  +
Sbjct: 326 DETYNAAPEAMLAALELLAQTPGRRKIAVLGAMKELGERSTKLHQQVGETVKKLNLDGLL 385

Query: 415 VTDDNPRSED----PEKI-------RAEIIHGIPGFIEKGNR 445
           V  D P +E      + I        ++++  +  +++ G+R
Sbjct: 386 VLVDGPDAETIVTSAQGIPCERCHNHSDLVSLLKTYVQPGDR 427


>gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
 gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
          Length = 487

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 91/509 (17%), Positives = 175/509 (34%), Gaps = 69/509 (13%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLF 59
           QD++      L+N  +       +  IN   ++SR I        +FV I+G + D H F
Sbjct: 6   QDILNATNGRLLNGSA-------DTVINGFFTNSREIGSLPFKNALFVPIIGERVDAHNF 58

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IPQ +  GA+A  +   + L        +    + V++T   L         K     + 
Sbjct: 59  IPQVVENGAKAFFIKKGHELPSGIGETAA----IEVEDTEAALLDTGLWYREKFNIPFIG 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+ GK++    V        +   +    STI                          
Sbjct: 115 ITGSVGKTTTKEMVAAALSSINIHKTKGNANSTIG--------------LPLTLFGLEPC 160

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  S     +  ++  +     FTN+G  HI    +++     K+ +  +   
Sbjct: 161 NEAAIIEMGISEFHEMEKLVEAGRPNHAIFTNVGSAHIGNLGSKENILKEKLHI-TDCFT 219

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
            +S   I ADD    +V         +    +++ G  +    +   +    +      +
Sbjct: 220 ADSVLFINADDELLMKVAAENSEFRPKNVKHIVTFGINEKADFYASSITISDSGTDFVAN 279

Query: 295 VEGKDFDFLFPLPG-----EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            + ++ + +             V NAL A  + + +GI  A+  + L +   +PGR   +
Sbjct: 280 YKSENGEAVSEQIHLKTLGLHNVRNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGNII 339

Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---------VFGCGGDRDQGKR 399
            +N  G  I  D Y  + +S++  ++ I  +  G   +         V   G   +    
Sbjct: 340 KSN--GLTIIDDTYNASPDSMKASVQIIGEMRGGTEPINRRFVVFADVLELGEYAETEHY 397

Query: 400 PIMGKIA-------LDLADIAIVTDDNPRSEDPEKIR----AEIIHGIPGFIEKGNRIEA 448
            +   I         +  D  I        +D E+I     +E +   P        +EA
Sbjct: 398 KVGEYIKFYNKENTENKIDCLIT-----VGKDSEQIILGVKSEDLETNPVTRHFSTNVEA 452

Query: 449 IRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                 +L K D +VV G +G +T  I+ 
Sbjct: 453 SDYLKSLLKKGDAIVVKGSRGMQTEEIIN 481


>gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
 gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
          Length = 467

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 102/479 (21%), Positives = 175/479 (36%), Gaps = 58/479 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  +  +++D+R +Q G  F+A+ G + DGH F+ QAIAQGA   +V + ++  +    
Sbjct: 26  QDTPVIAITTDTRTLQPGEAFLALRGERFDGHHFVEQAIAQGAVCAIVDADFTADN---- 81

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              N P+L V ++       A     +    I+ VTG+ GK++    +  +         
Sbjct: 82  --PNLPLLTVQDSLAAYQTIARWWREQFTIPIIGVTGSVGKTTTKELIAAVL-------- 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                 T  +  +               L   S      + +   + G         +  
Sbjct: 132 -----GTQGNVHKTQANYNNEIGVPKTLLQLNSHHNYAVIEMAMRARGEIALLTQIARPT 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  HI    ++QA   AK  L  E +P+ S A++  D  + + +   A     
Sbjct: 187 IGLITNVGTAHIGRLGSEQAIAEAKCELLAE-MPQNSVAVLNCD--HHRLMDTAATVWSG 243

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L+ G +G  +  + + A       T+ VEG   D   PLPG     N L A  +   I
Sbjct: 244 ETLTYGLEGGDLQGELIDAH------TLRVEG--LDLPLPLPGYHNASNFLAALAVFKII 295

Query: 326 ---GIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              G+    +   L+    + +  GR +    ++    +   Y     S+   LK +   
Sbjct: 296 QGQGLSPTELYTPLQTGLSVQLPEGRAKRYELSNDIVILDETYNAGLESMIAALKLLMET 355

Query: 380 TSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHG 435
              R I V G      +R       +GK+A +L  D   +  D       E I   +  G
Sbjct: 356 PGQRFIAVLGTMKELGERSLEFHQKVGKMAQELNLDALFILAD-----AEEAIA--MATG 408

Query: 436 IPG--FIEKGNRI-EAI-----RTAIEMLNKQDVLVVAGKGH--ETVHIVTNGEKKMSV 484
             G   +E G    E I        IE +   D ++     H  E   +V    K +  
Sbjct: 409 AKGLSVVEIGKMEVENIHNQIAEQLIEFIQPGDRILFK-ASHSVELYRVVEKVRKTLES 466


>gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SS3/4]
          Length = 462

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 162/470 (34%), Gaps = 53/470 (11%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++    +         +N++  DSR ++ G +FV I+G K D H F+ Q   +GA A++ 
Sbjct: 10  VLATGGVLLSGDDGVMLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGAGAVLT 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +       ++   + VD+T+K L      L  +    I+ VTG+ GK++    +
Sbjct: 70  SEH--KEKTEEMAETSCAWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTREMI 127

Query: 134 Q-------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                    + +  G S+ Q+G   T+S                           V  + 
Sbjct: 128 AAALSARFHVYKTPGNSNSQVGVPITVS--------------------EITKEDEVGVLE 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S  G         K      TN+G  HI+   +++  +  K+ + + L       I+
Sbjct: 168 LGMSEPGELTVIARIAKPDVAVITNIGITHIEQLGSRENIYREKLTIQDGL-SDGGILIL 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD        +    G + +  G  +        +  +  K + T    GK    L  
Sbjct: 227 NGDDDMLCRTRGKV---GVKTVYYGTGETCDYRAVDLVLMDGKTEFTAVHAGKTQKVLLN 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G   V NAL A  +C   G+      E L   H    R + V  + R   +   Y  +
Sbjct: 284 VMGTHNVMNALAAIAVCCERGMTMEEAAEGLLTFHGFKHRQQ-VYADGRFTVMDDSYNAS 342

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPR 421
             S++  L   + +T  R I V     +         R +    A    D+ +   +  R
Sbjct: 343 PASMKAALDVFQGLTGKRHIAVLADMKELGGNYLAYHREVGEYAANSGVDLVVTLGEACR 402

Query: 422 SEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAG 466
           S         +  G+    E       +  E ++     +   D ++  G
Sbjct: 403 S---------LAEGVRAVKEIPVVEFSDCGEMVKYLEAEIRDGDCVLFKG 443


>gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
 gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
          Length = 453

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 83/424 (19%), Positives = 162/424 (38%), Gaps = 51/424 (12%)

Query: 1   MKLQDLIYKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKL      +  +++   N +S++P    +R  N+V  DSR I  G +FV + G + DGH
Sbjct: 1   MKLT---LHEVAQVLGAKNDISLYP----DRAFNKVEFDSRLITEGDLFVPLKGAR-DGH 52

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            FIP A   G    +             +  + P ++V++    L   A+    K    +
Sbjct: 53  DFIPVAFENGCVVTLSE-----------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEV 101

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GK++    +  +   +  +    G  +                  L       
Sbjct: 102 IAVTGSNGKTTTKDMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  V      H  D H L  I K      T  G  H+++  +++     K+++ + 
Sbjct: 155 -------VLEMGQDHLGDIHLLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADG 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           + P     I       +  +  +   +   ++  G Q     L+    + +K  +T +V 
Sbjct: 208 MEPGSKLLIP------AYPIADKLLPSHVDLIRFGEQAD---LQVTSLVESKDSLTFTVN 258

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D D   P+ G++   NA+VA+ +   +G+ +  +   L  L++   R E+    + G 
Sbjct: 259 FMDGDIFLPVTGKYNATNAMVASYVGKTLGVSNEAIKSALASLNLTRNRTEW-KKAANGA 317

Query: 357 RIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            I  D Y     ++ +IL+   +I     G+ I V     +       +  ++ L L+  
Sbjct: 318 DILSDVYNANPTAMRLILETFSSIPANEGGKKIAVLADMKELGSQSVELHNQMILSLSPD 377

Query: 413 AIVT 416
            + T
Sbjct: 378 VLDT 381


>gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
          Length = 447

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 80/467 (17%), Positives = 174/467 (37%), Gaps = 54/467 (11%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E+I   +   +    + ++N  + D+R IQ G +++ +VG K DGH +IPQA  +GA 
Sbjct: 3   IREIIEATNGKLLSGHLDDQVNGFTQDTRVIQPGNLYIPLVGIK-DGHDYIPQAFNKGAA 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A + +        +        +++V++T K L   A  +       ++ +TG++GK+S 
Sbjct: 62  ATLTNRPIEDDSHN--------VILVEDTMKALGDLARYVRVHSHAKVIGITGSAGKTST 113

Query: 130 ASFVQQI-------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
              +  +        +  G  +  IG   TI  +                       + V
Sbjct: 114 KDMIASVISQQYTTLKTQGNFNNNIGLPLTILRYNG---------------------EEV 152

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +      +          + TN+G  HI    +++    AKM +   +     
Sbjct: 153 MVIEMGMNHLEEIDYLTKIALPDIAAITNIGTAHIGELGSRENILQAKMEIVHGM--NHG 210

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFD 301
             ++  D+    +++   H  G  + ++G +    +    +    +     + V G+D+ 
Sbjct: 211 TLVVNNDN----DLLSTVHPEGISLKTIGIESDADLKATDIILNEDMSSFRVKVNGQDYA 266

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   ++NAL+A  + + + I     +  +E   +   R + +  +     I   
Sbjct: 267 VRVYVPGVHFIFNALIAIQIGLLLDIPMEKCIRGIETFELTKNRNDILTLDRHIRVIDGT 326

Query: 362 YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y    +S++  +  +   T  +I V   +   G   +   R +   +     D+ +    
Sbjct: 327 YNANLDSMKSSIDVLSGYTDRKIAVLGDMLELGDYEETLHRAVGAHLLKKNIDLILTVGP 386

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVV 464
             R      I  E+    PG     +   ++     E L + DV++V
Sbjct: 387 AARY-----ISDEVNKAKPGIAYHFDDNASLSAYLQECLEENDVVLV 428


>gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK353]
          Length = 456

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 104/479 (21%), Positives = 184/479 (38%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  PTAFAQGAAATLSDRPVAE----------GAYILVDDVLAAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+  A + +   +L +   R E+    S G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVAEAAITQSFSELELTRNRTEW-KKASNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPSNPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKG 439


>gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
 gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
          Length = 456

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 172/473 (36%), Gaps = 46/473 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  K+       +     +   +++  V+ DSR IQ   +F+AI G + DGH+FIPQ
Sbjct: 1   MKNMTLKEIAVACGGIYYGDDENYYKEVTGVTIDSRKIQKDCLFIAIRGARVDGHMFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           +I  GA   V         +        P ++V++  + L   A          ++ ++G
Sbjct: 61  SIHDGALCAVSEKRIESASY--------PYIMVNSCAQALKDIAEHYRRSLRLKVVGISG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T  +F  +N +  P  I+  +         V
Sbjct: 113 SVGKTSTKEMIASVLGQ------KYNVLKTEGNF--NNEIGLPLTIFNIRE-----EHEV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  +      +      TN+G  H++  ++++    AK  +F  + PK  
Sbjct: 160 AVLEMGISDFGEMERLAKMARPDVCVLTNIGCAHLEQLKSREGILKAKTEMFLYMNPK-G 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTISVEGKDF 300
             I+  DD     V           +  G      +  +                   +F
Sbjct: 219 DIILNGDDDMLASV---TPANHIEPVFFGLDPALAYSAEDIENLGLKGTSALFHTPDSEF 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   VYNAL A  +   +G++   + + +E L  + GR   + T      I  
Sbjct: 276 GAHISIPGAHMVYNALAAIAVGRVLGMNDGEIRQGIESLVPLAGRNNLIETE--FLTIID 333

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDL-----AD 411
           D Y     S++  L  +     G  + + G   +   +        G+ A +        
Sbjct: 334 DCYNANPASMKASLDVLSK-AKGHTVAILGDMFELGPKAHEMHCETGEFAAEAGIDELIC 392

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I  +++D  R      + A     +  F  K   ++ I T I   NK D ++V
Sbjct: 393 IGYLSEDIARG----AVSANPEMEVHHFDTKTEFLDHIDTLI---NKDDTILV 438


>gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Weissella cibaria
           KACC 11862]
          Length = 454

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 179/473 (37%), Gaps = 40/473 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E+   ++   +   +  +   + DSR  +AG +FV +V    DGH ++
Sbjct: 1   MKLT------LQEMATAINAEIINAADVAVTSTTFDSRKAEAGSLFVPLVAAN-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA   +  + +        + ++ P LVV +T       A     +    ++A+
Sbjct: 54  ASAVANGATVTLWQADHP------NVPTDVPTLVVADTLVAFQQLAVYYLKQVQPKVVAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G++GK++   FV  I    G S+F+     T ++F  +N +  P+ I    A + L   
Sbjct: 108 SGSNGKTTTKDFVAAI----GASTFK--TVKTPANF--NNEIGVPTTILSMPADTELL-- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +       G      + +       T +G  HI++ +T++   + KM +   L P 
Sbjct: 158 ---VIEFGMDRPGDLTFLSEMVHPDIAVLTMIGEAHIEFFKTRERIADGKMEIIAGLQP- 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +   D+   +E  +   +A     + G       L       N    T   +    
Sbjct: 214 NGVLVYNGDEPLLRE--RAGQHAFLHTATFGL-NPDNDLYASTIAMNPVGATFQTDKSAM 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G + V NAL A  + I +GI    + + L +  +   R E++   + GG+I  
Sbjct: 271 TYHIPLTGRYNVSNALAAISVGILLGISDDKIAQALAEAPITENRTEWL-AGNFGGKILS 329

Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALD-----LADIA 413
           D Y     + + +L        +GR I V G   +  +    +   +A       +  + 
Sbjct: 330 DVYNSNPTAAKEVLHFFAETPVTGRRIAVLGDMLELGEAGPALHASLAEKLDPATIQHVY 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +V D     ED   +      G      K ++   I      L   D +++ G
Sbjct: 390 LVGDIMASLEDVLSVN--YPAGTVKRYSKDDKATLIADLQADLTADDAVLLKG 440


>gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
 gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
          Length = 472

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 103/445 (23%), Positives = 165/445 (37%), Gaps = 28/445 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +S DSR +  G +FVAI G + DGH FI + +AQGA  +++  A++ +  +      
Sbjct: 21  FENISIDSRTLGKGDLFVAIQGQQHDGHDFIDRVLAQGAGGVMIDQAHASRINTPRATGR 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VV +T   L   A          + A+TGT+GK+S       +C   G     +  
Sbjct: 81  GARVVVKDTVVALGDLARHRRRSVNPRVAAITGTNGKTSTKEMAAMVC---GRRYRVLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   ++                  L       V  + +  ++ G         +   G  
Sbjct: 138 TGNFNN----------EIGLPLTLLRLEKGHQVAILEMGMNAPGEIGRLAKICEPDMGVV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H++  +       AK  L E L  K+  AI+ ADD     VMK A     RV++
Sbjct: 188 LNVGAGHLEGVENIDGVARAKAELLEALTDKD-TAIVNADDM---RVMKMAQKVRGRVVT 243

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIG 326
            G  Q   I    V     +    + +   D      LP    F V NAL AA +   +G
Sbjct: 244 YGMRQKADITAASVRRQDGRVCFDLCLSATDEQVAVALPASGTFMVSNALAAAAIGAGLG 303

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRII 385
           + +  +   LE    VPGR     T +    +   Y     S++  L  +R +   GR I
Sbjct: 304 LSAPEIKAGLENFSPVPGRMTITQTRAGFTLVDDTYNANPESMKAALAGLRELKGAGRGI 363

Query: 386 VVFGCGGDRDQGKRPIMGK----IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           ++ G   +       + GK     A    D   VT +   +       A +    P  I 
Sbjct: 364 LIMGDMFELGDHAPVMHGKTGVMAAESGVDRLYVTGEFAEAVAGGAAAAGMT---PEKIM 420

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             ++   I     +L   D ++V G
Sbjct: 421 IESKETIIEAVCPVLEPGDWVLVKG 445


>gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
          Length = 455

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 149/415 (35%), Gaps = 47/415 (11%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  + +   +  +R    +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V 
Sbjct: 14  LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             Y      A       +L VDNT       A     +    ++ +TG+ GK++    + 
Sbjct: 74  RDYQPPSDLAAGH----LLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIA 129

Query: 135 QICQRSG-------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +    G         + +IG   T+     D+                        + +
Sbjct: 130 AMLAVRGPVLKPEANYNNEIGVPKTVLQIDPDHHW-------------------AAVLEM 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                G         +      TN+G  HI    ++QA   AK  L  +L      AI+ 
Sbjct: 171 GMRGRGQIAELARIAQPNIAVITNVGTAHIGLLGSEQAIAEAKCELLAQL-SGTGLAILN 229

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           AD+       +R +   CR  + G Q   +  + +         T+ VEG+ F    PLP
Sbjct: 230 ADNHRLIATAQRLNLPRCR--TYGLQNGDLQGQLIDLE------TLVVEGQRF--RLPLP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L    +   +G+D     +    + +  GR   +  +     +   Y     
Sbjct: 280 GAHNALNFLAGLAIAQELGLDWEAFRDL--SVTLPQGRARRIELSPDIVLLDETYNAGLE 337

Query: 368 SLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           S+   L+ +      R I V       G   +   R +  K A    D  ++  D
Sbjct: 338 SMLAALQLLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYAD 392


>gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 456

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 98/479 (20%), Positives = 183/479 (38%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    ++    DSR +++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFANVSLSNAEFDSRLVKSGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  PTAFAQGAAATLSERPVA----------GGAYILVDDVLTAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-K 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFDCNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGANSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEIIHGIPGFI----EKGNRIEAIRTAI-EMLNKQDVLVVAG 466
           T      +D E +     EI      +     ++ ++ E +  A+ E L   D +++ G
Sbjct: 381 THLFLYGQDMEALYDYAKEIYPPGKVYYFIKNDEKDQFEQLTKAVRENLTPADQILLKG 439


>gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
 gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
          Length = 463

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 160/480 (33%), Gaps = 53/480 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  K+                 ++ + V+ DSR +Q   +FVAI G + DGH FIPQ
Sbjct: 1   MKNMSLKEIAAACGGTYHGDPALLSKEASSVAIDSRKVQKDTLFVAIKGARVDGHSFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            + QGA   +         +        P + V +  + L   A          ++ ++G
Sbjct: 61  VMDQGAICSLSEQDLGDVTY--------PYIQVASCTEALKDLAEHYRRSLDIKVVGISG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +         +     T  +F                  +      V
Sbjct: 113 SVGKTSTKEMIASVLSE------KYCVLKTEGNF-------NNEIGLPLTVFNLRKEHEV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  +      +      TN+G  H++   T+      K  +F+ + P + 
Sbjct: 160 AVLEMGISHFGDMEPLAKIARPDVCVITNIGYAHLENLGTRDGILKEKTSMFDFMNP-DG 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDF 300
             I+  DD    ++       G + +  G      F   +           T       F
Sbjct: 219 TVILNGDDD---KLRGYTSERGIQPVYFGLDPACPFHAEQIQKMGLKGTVATFVTPSSSF 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG+  + NAL    +  A+G+    ++  +EKL  + GR   +        I  
Sbjct: 276 SAHVSIPGDHMISNALAGVAVGYALGMKDEEIIRGIEKLVPIAGRNNLIEAEH--YTIID 333

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR--DQGKRPIMGKIALDLADIAIVTD 417
           D Y     S++  L  +    +  + ++   G     ++     +G  A+      ++  
Sbjct: 334 DCYNANPASMKSSLDVLAFADTRTVAILGDMGELGADEKKMHAEVGSYAVKKGISLLIC- 392

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKG------------NRIEAIRTAIE-MLNKQDVLVV 464
                     + AE+ +      E              +  EA    ++ +L +QD ++V
Sbjct: 393 -------IGTLSAEMANAARTASEASSDSDTKTLVYHFDTKEAFYRQMDQLLKEQDTVLV 445


>gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
 gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
          Length = 453

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 181/466 (38%), Gaps = 38/466 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL+  ++   +   +   N V  D+R I+   I+ AI G + +G+ F+ +A ++GA  
Sbjct: 5   LNELLEAMNGELIVKGKTDFNSVCIDTRKIEKNNIYFAINGERFNGNKFVIEAFSKGASI 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V       + +  ++    ++ V++T K L   A+    K    ++ VTG+ GK+S  
Sbjct: 65  AIVDEILFDLNNTDNLQ---TVIKVEDTEKALLNLANYYRKKLGLKVIGVTGSCGKTSTK 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +            +     T  +F                 L   SS  V  + +  S
Sbjct: 122 DLIAAFLSE------KYKVFKTKGNFNNQIG-------LPLMILELDSSIDVAVLEMGMS 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           + G      +  +      TN+G  HI+  +TQ+    AK  +F     + +  II  +D
Sbjct: 169 NLGEIDVLANCARPDIAVITNIGLSHIENLKTQENILKAKSEIF-NYFDETNTLIINGED 227

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 + +  +    +L +GY  +  ++   +    +K   T+  + ++  F  P+ G+
Sbjct: 228 EN----LLKIKDKCFEILKIGYNHEYDVYAFNIILEEDKTTFTVKDKNEESIFTIPMAGK 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N+++A  +   + +    + + ++ L     R + +  N +   I   Y  + +S+
Sbjct: 284 HNILNSMLAVEVAKKLNVTFDEMKKGIKNLEATSMRLQVIKRN-KITIINDCYNASPDSM 342

Query: 370 EMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +  +  + +  +GR I + G      +        +G  AL   D+ I   +        
Sbjct: 343 KSSMDVLSSYKTGRKIAILGTMNELGEEAVKSHIEVGNYALTKVDLLIAVGEY------- 395

Query: 427 KIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
             +     G  G   I    + E I     ++ + DV++V A +G 
Sbjct: 396 --KDYFKKGFTGENIITFATKEECIDKLDTIIKENDVVLVKASRGM 439


>gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
 gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 446

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 151/409 (36%), Gaps = 35/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ   +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPDSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G            S  + +N +  P        L      
Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLA--------SEKSFNNNIGVPLT-----LLRLRPDH 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE L   
Sbjct: 151 HYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGL-SS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR   V      G I +
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRL--VEQKGYRGAIII 327

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           D ++ +N L +     +     G  ++V G   +  QG      +I   
Sbjct: 328 DDSYNANPLSVSAAIAVLAKRPGHSVLVLGDMLELGQGAEQFHQEIGKR 376


>gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
 gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
          Length = 477

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 130/376 (34%), Gaps = 16/376 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR +  G +FVA+ G + DGH F+    A GA   VVSS +  Q  S         
Sbjct: 32  VVIDSRKVVEGAVFVALPGERTDGHRFVGAVFANGASWAVVSSEWFSQHGSEHRGEGRRF 91

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV D+        A+    +    ++ + G++GK++    V  +   +       G    
Sbjct: 92  LVADDPVAAFQQLATAYRERFDIPVIGIGGSNGKTTTKEMVAAVLSTAFKVRVTQG---- 147

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +N L  P  ++  +  + ++      + +  +  G         +   G  TN+
Sbjct: 148 ----NYNNHLGVPLTLFQLRRDTEMA-----VIEMGINHPGEMAFLASIARPTHGLLTNI 198

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G +H+++  +      A+  LF+ L      A +  DD              C     G 
Sbjct: 199 GHEHLEFFGSLDGVAKAEAELFDYLEVSGGTAFVNLDDHRLAAAGASLSRKICYGAVPGE 258

Query: 273 QGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +   +       +   T+  E G          G   V NA+ AA +    G+    
Sbjct: 259 PCAWWAEEVGSDRVGRIAFTLCSEAGIRQPVAMNFIGRHNVTNAVAAAAVGAHFGLAPEQ 318

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFG 389
           +   L +L    G        + G  +  D Y    +S+ + L  + ++  SGR + V G
Sbjct: 319 IASGLGELMPASGWKRMELLEAGGVVVLNDTYNANPDSVRLALDTLASLDCSGRKLAVIG 378

Query: 390 CGGDRDQGKRPIMGKI 405
              +           I
Sbjct: 379 DMLELGGNAALEHESI 394


>gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 473

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 92/493 (18%), Positives = 165/493 (33%), Gaps = 56/493 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++                 ++  R+++ V  DSR  +   +F+AI G + DGH FI
Sbjct: 4   MSLQEIAAA-----CGGTYYGGSEFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ + QGA   V         +S         + V +  + L   A          ++ +
Sbjct: 59  PKVMEQGALCAVSEEDLGDVPYS--------YIKVASCEQALKDIAEHYRRSLDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G+ GK+S    +  +  +      +     T  +F         + I L   +  L  +
Sbjct: 111 SGSVGKTSTKEMIASVLSQ------KYSVLKTEGNF--------NNEIGLPLTVFNLRKE 156

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V     S   +  RL  + +      TN+G  H++   ++     AK  +F   + 
Sbjct: 157 HEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGILKAKTEMFAY-MN 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEG 297
           +    I+  DD    ++   +   G   +  G      F          N          
Sbjct: 216 ENGTIILNGDDD---KLRGYSPENGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPN 272

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F     +PG   VYNAL A  +  A+G+    +   +E    + GR   +        
Sbjct: 273 SSFTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAGRNNLIRAPH--FT 330

Query: 358 IYVD-YAHTSNSLEMILKN-IRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     S++  L       T    I+  +F  G +  Q  R +         D+ 
Sbjct: 331 IIDDCYNANPTSMKASLDVLAFADTRKAAILGDMFELGENEKQMHREVGIHAVRKGIDVL 390

Query: 414 IV---------------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           I                 +    +E  E+  +   H          + + +R A E+L +
Sbjct: 391 ICIGSLMKSAADGALEYLEQQKNAEHTEETPSSSAHFPTQICHFATKADFLREAKELLKE 450

Query: 459 QDVLVV-AGKGHE 470
            D ++V A  G E
Sbjct: 451 GDTVLVKASHGME 463


>gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
 gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 149/415 (35%), Gaps = 47/415 (11%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  + +   +  +R    +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V 
Sbjct: 14  LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             Y      A       +L VDNT       A     +    ++ +TG+ GK++    + 
Sbjct: 74  RDYQPPSDLAAGH----LLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIA 129

Query: 135 QICQRSG-------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +    G         + +IG   T+     D+                        + +
Sbjct: 130 AMLAVRGPVLKTEANYNNEIGVPKTVLQIDPDHHW-------------------AAVLEM 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                G         +      TN+G  HI    ++QA   AK  L  +L      AI+ 
Sbjct: 171 GMRGRGQIAELARIAQPNIAVITNVGTAHIGLLGSEQAIAEAKCELLAQL-SGTGLAILN 229

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           AD+       +R +   CR  + G Q   +  + +         T+ VEG+ F    PLP
Sbjct: 230 ADNHRLIATAQRLNLPRCR--TYGLQNGDLQGQLIDLE------TLVVEGQRF--RLPLP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L    +   +G+D     +    + +  GR   +  +     +   Y     
Sbjct: 280 GAHNALNFLAGLAIAQELGLDWEAFRDL--SVTLPQGRARRIELSPDIVLLDETYNAGLE 337

Query: 368 SLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           S+   L+ +      R I V       G   +   R +  K A    D  ++  D
Sbjct: 338 SMLAALQLLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYAD 392


>gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC
           13032]
 gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC
           13032]
          Length = 514

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 91/460 (19%), Positives = 166/460 (36%), Gaps = 40/460 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SATIR 87
           + V  DSR +  G +F+A+ G + DGH F   AI +GA A++ +    +         I+
Sbjct: 29  SSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREVDVPAIVVPPVKIQ 88

Query: 88  SNTPILVVDNT-------RKFLSLFASRLYG----KHPENILAVTGTSGKSSVASFVQQI 136
            +   +   +         + LS  A  +       H  N++A+TG++GK+S   F+  +
Sbjct: 89  ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATV 148

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             + G +    G  +            T    YL    + +S++G+ H           +
Sbjct: 149 LDQDGPTVAPPGSFNNELGLPHTALRCTTDTKYLV---AEMSARGIGH----------IK 195

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSK 254
           H  +       +  N+G  H+    +++    AK  + E L  K     A++ ADD +  
Sbjct: 196 HLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPFVA 255

Query: 255 EVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            +  R         +   Q     +           +   T++ +   +     + GE Q
Sbjct: 256 RMAPRTKARVVWFTTDAGQAKKSDYWATSISLDAVARASFTLNTKDGSWPVTLQVFGEHQ 315

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V NAL AA + +  G+   LV+  LE           V T + G  I  D Y    +S+ 
Sbjct: 316 VANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMDVKTRADGVTIINDSYNANPDSMR 375

Query: 371 MILKNIRTITSGR----IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +  +    SGR       V G  G+          ++  +LA    V +     E+P 
Sbjct: 376 AGIAALAYTASGRSEATSWAVLGQMGELGDDASEAHAELGAELAKYN-VQELVAVGENPN 434

Query: 427 KIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVV 464
                      G       +   A+      + + DV++V
Sbjct: 435 CAALAESAASLGVSTHVVSDVDAALELLAGHIKRDDVVLV 474


>gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 518

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 105/472 (22%), Positives = 171/472 (36%), Gaps = 56/472 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ------------ 80
           V  DSR I  G +FVA+ G   DGH F   AIAQGA  ++ +    +             
Sbjct: 31  VEFDSRKITPGGLFVALPGKHVDGHNFARDAIAQGAAGVLAAKDVGVAAVIMPKAAKREG 90

Query: 81  ---DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                +A     +   VV    K  S  AS L  +H  +I+ +TG++GK+S    V  + 
Sbjct: 91  DNSGLAANDPDGSAAGVVSGMSKLASYVASTLTAEHGLSIVGITGSAGKTSTKDLVASVL 150

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +G +    G  +            T S  +L    + +S++G+ H            H
Sbjct: 151 SAAGQTVAPPGSFNNELGHPYTVLRCTESTKFLV---AEMSARGIGH----------IAH 197

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKE 255
                    G   N+G  H+    +++    AK  L E L    +   AI+ ADD     
Sbjct: 198 LATIAPPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEALPSAAEGGVAILNADDPL--- 254

Query: 256 VMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQ 311
           V   A     RV++  G  G   +     ++ +  + + ++     +       + G  Q
Sbjct: 255 VAGMAPRTRARVVTFSGQHGAADYYATDISLDDVTRASFTLHSPHNEPQRVELNVFGAHQ 314

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V NAL AA + I  GID+A V   L   H   G    V T + G  +  D Y    +S+ 
Sbjct: 315 VSNALAAAAVGIESGIDAATVARSLSSAHGESGNRMDVQTRADGVTVINDAYNANPDSMR 374

Query: 371 MILKN---IRTITSGRI-IVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             +           G   I V       GGD     R +  ++A       +   DN   
Sbjct: 375 AGIAALGFTAAARPGVRSIAVLGEMGELGGDSVSAHRELGNELARYRVTHLVAVGDNDAM 434

Query: 423 EDPEKIRAE---IIHGIPGFIEKGNRIEAIRTAIEMLNKQ-------DVLVV 464
           +  +    +    +       E  + ++AI +   M  +        DV++V
Sbjct: 435 DALKDRARDRGIYVASARDVEEATSLVQAILSVPPMGEEGWYERDARDVVLV 486


>gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 456

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 101/471 (21%), Positives = 169/471 (35%), Gaps = 47/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +    F EL+  L    +   +   + VS+DSR IQ G +FVA+ G + DGH ++ Q  A
Sbjct: 2   IKSMTFSELVVPLDARLVAG-DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA   +V              ++ P LVV +TRK L+   +        + + A+TG+S
Sbjct: 61  KGAVGALVEREVQG--------ASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSS 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I +  G          T+ +   +       P+ L   L          
Sbjct: 113 GKTTVKEMLASILRTRG----------TVLATRGNLNNELGVPLTL---LELAPEHSAAV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + AS  G     +   K      TN G  H+           AK  + E L      A
Sbjct: 160 IELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGL-NASGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++  +D       KRA N      ++      +H   +          TI+         
Sbjct: 219 VLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             L G   V NAL AA    A+G+    ++  L  +  V GR   V   S G R+  D Y
Sbjct: 279 LNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRA-VVQIASNGTRVIDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDN 419
                S+   +  +   +   ++V+   G      +QG R +    A  ++ +  V    
Sbjct: 338 NANPASINAAVDILTGFSGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAVGP-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                       + H +  F E      ++ E I       +    L++ G
Sbjct: 396 -----------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
 gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
          Length = 455

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 151/454 (33%), Gaps = 45/454 (9%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            +   +   + V +DSR I++G +FVA+VG + DGH F+ +  A+GA A +V        
Sbjct: 17  ALAGDDVTFDSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAAKGAVAALVQR------ 70

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                    P L V +TR  L    S     +   + AVTG+SGK++V   +  I +  G
Sbjct: 71  --TMPELGLPQLQVADTRLALGRLGSLNRQAYSGPLAAVTGSSGKTTVKEMLASILRTRG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                 G  +                      L          + + AS  G   + +  
Sbjct: 129 PVLATRGNLNNDLGVPLT-------------LLELAPEHVGAVIELGASRIGEIAYTVAL 175

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +      TN G  H+      +    AK  + E L P +  A++  DD       +RA 
Sbjct: 176 TRPQVAIITNAGTAHVGEFGGPEKIVEAKGEILEGL-PADGIAVLNRDDPAFDIWQRRAA 234

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  ++         + +          T+     +      L G   V NAL AA 
Sbjct: 235 GRRVLSFALDASDADFLARDIQPDARGCPAFTLRGPAGEARIQLNLLGRHNVANALAAAS 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
              A+G+    +   LE L  V GR       S G R+  D Y     S+   +  +   
Sbjct: 295 AAHALGMPLVGIRAGLESLQPVKGRAVAQFAPS-GVRVIDDSYNANPASMRAAIDILAGF 353

Query: 380 TSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +   ++ +   G      +     +G  A    D                +   + H + 
Sbjct: 354 SGRTLLALGDMGELGAWAEEGHRQVGAYAAGKVDALY------------AVGPLMTHAVA 401

Query: 438 GFIEKGNRIEA-----IRTAIEMLNKQDVLVVAG 466
            F  KG R  A     +       +    +++ G
Sbjct: 402 AFG-KGGRHFADQAGLLEALCSEQHPDTTILIKG 434


>gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMD-9]
 gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus LMD-9]
          Length = 457

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 182/479 (37%), Gaps = 52/479 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  E++   +     +++  +N++  DSR I AG +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEIAEVVGAKNDVT-AYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A               + ++   ++VD+T +     A+    K   +++AV
Sbjct: 56  QTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G                 + I L     ++   
Sbjct: 107 TGSNGKTTTKDMIHDILATTYRTYKTQG--------------NYNNEIGLPYTALHMPDD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K      T +G  H+++  ++      KM++ +  +P
Sbjct: 153 TEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG-MP 211

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  ++  D      ++     +   V+  G   +   L        K  +T S +  D
Sbjct: 212 DGSLLLVPCDP-----IVDPFLPSNLEVVRFGDGAE---LTVSELTEYKDHLTFSTKFLD 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    + G  I 
Sbjct: 264 GQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEW-KKAANGADIL 322

Query: 360 VD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     +++++L+    I     G+ I V     +  +    +  ++ L L   AI 
Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P             ++ +A ++   E L + D +++ G
Sbjct: 383 TVIF-YGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILLKG 440


>gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
 gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
          Length = 468

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 141/391 (36%), Gaps = 24/391 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS DSR I++G IF A+ G + DGH ++  A   GA   VV+  +  +   +  +    
Sbjct: 31  SVSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCAVVNREWYSRHAESVHQEGWR 90

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            LVV +T + L   AS    K    ++ + G++GK++       +           G T 
Sbjct: 91  YLVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKEMTAAVL----------GTTY 140

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +     +       P+ L        +  +  V +  +  G  +      +      TN
Sbjct: 141 KVHMSKGNLNNHLGVPLTLFGLRD---THDLAVVEMGINHPGEMELLTSIARPDFALLTN 197

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSV 270
           +G +H+++         A+  L+ + + +     +   DA    ++  A     RV    
Sbjct: 198 IGHEHLEFLGDLDGVAEAETVLYHDTIMRGGTVFVNTGDA---RLLAAAREIQNRVDYGP 254

Query: 271 GYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              G  I  +K+          T+         +    G   V NA+ AA +     +  
Sbjct: 255 ERDGNLIWPEKIVLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVAAAAVGSCFNVPL 314

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVV 387
             + E L  L    G        + G RI+ D Y    +S+ M LK +  I  SGR ++V
Sbjct: 315 NAIAEGLGSLVPADGWKRLEFIEAGGIRIFNDTYNANPDSVTMALKTVCEIPCSGRRVLV 374

Query: 388 F----GCGGDRDQGKRPIMGKIALDLADIAI 414
           F      G   D   R +   +A    D   
Sbjct: 375 FADMLELGEVSDAEHRRMGALVAQLPFDAVY 405


>gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida BIRD-1]
          Length = 455

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 89/464 (19%), Positives = 154/464 (33%), Gaps = 44/464 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L   L    +   +     VS DSR + AG +FVA+ G + DGH ++    A+GA A
Sbjct: 7   LSQLTTALKGQHIGG-DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    +  D         P L+V + R  L    +       + ++A+TG+SGK++V 
Sbjct: 66  ALVEREVAGVDL--------PQLLVKDCRVALGQLGALNRAAFDKPVVAITGSSGKTTVK 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +  GL     G  +                      L          + + AS
Sbjct: 118 EMLASILRTRGLVHATRGNLNNDLGAPLT-------------LLEIAPEHSAAVIELGAS 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  ++ +   +       N G  H+           AK  + E L  +   AI+  DD
Sbjct: 165 RIGEIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGL-GQGGIAILNLDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGE 309
                   RA        + G      H   +          T+   G+       + GE
Sbjct: 224 KAFDIWKARAGAHKVVSFARGNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGE 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AA    A+G+  + +   L  +  V GR         G R+  D Y     S
Sbjct: 284 HNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGR-TVAQIAPNGVRVIDDSYNANPTS 342

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS--EDPE 426
           +   +  +   +   ++V+   G          +G+ A +         D  R   +   
Sbjct: 343 MCAAIDILAGFSGRTVLVLGDIG---------ELGQWAEEGHRQV---GDYARGKVDALY 390

Query: 427 KIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + + + H +  F         + E I            +++ G
Sbjct: 391 AVGSNMAHAVKAFGANGRHFATQAELIDAVSAENASDTTILIKG 434


>gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-63q42]
 gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile ATCC 43255]
          Length = 457

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 166/451 (36%), Gaps = 27/451 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++++  DSR   A   FVAIVG   DGH F+  A   G +  +     +  +      S+
Sbjct: 26  VSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGCKTFI----KNESNGIKLESSD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T   L   +     K     + VTG+ GK++    +             I  
Sbjct: 82  INLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDMIYSA----------ISA 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              I    ++       P+ L    +         + +  S     ++ +D +       
Sbjct: 132 KLNILKNEKNLNNHFGVPLTL---FNLNKEHECAVIEMGMSGFNEIKYLVDIVNPKIAVI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +N+G  H++   +Q+    AKM +      + +  I+  DD +   + ++ H    +   
Sbjct: 189 SNIGLSHVEKLGSQEGILKAKMEITSNF-DETNTLIVNGDDKFLSTLKEKEHAYKLKTFG 247

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +   ++ +      +       + GK  +   P  GE  +YNA+ A  + + + I  
Sbjct: 248 FN-KNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGLCLNISL 306

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV--- 386
             + + L+       R + +  N +   I   Y  + +S++  LK +      R+ +   
Sbjct: 307 DYIKKGLKNFKGTKMRLDIIK-NEKLTIINDSYNASPDSMDAALKILGRYKGRRVAILGD 365

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           +   G   + G R ++GK +++  DI I   +N       +   ++           NR 
Sbjct: 366 ILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVF--IGEEAKQLGFNSANIYHFENRE 422

Query: 447 EAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
           +      E++   D ++V G +G     IV 
Sbjct: 423 DVFNKLNELVKTGDTILVKGSRGMRLEKIVE 453


>gi|71279923|ref|YP_271117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
 gi|71145663|gb|AAZ26136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
          Length = 513

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 148/415 (35%), Gaps = 32/415 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW----IFVAIVGNKEDGHL 58
           L  L+     ELI       +   E  I+++  DSR I+        F+A+ G   DGH 
Sbjct: 6   LTTLVKVTDGELIVPAIQTALSLDELVIDDLVIDSRAIKEHSDKCSAFLALKGPNFDGHR 65

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F  Q I QG + ++V    S         ++T  L+V +TR  L   A+ +  +     +
Sbjct: 66  FAEQVIKQGCQLLIVDHHLSA-------VTDTAQLIVSDTRIALGKIAAFVKKEVAPKTV 118

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG+SGK++V   V  I  R G         +T  +F  D  +           L   +
Sbjct: 119 GITGSSGKTTVKEMVAAILSRLGK------VLATNGNFNNDIGVPL-------TLLRLDN 165

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S     + + A+  G   +     +       N+   H++          AK  +F  L 
Sbjct: 166 SHDFAVIEMGANHMGEIAYTTALTQPDVAVINNIAAAHLEGFGDLCGVARAKGEIFSGL- 224

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A+   D  Y+ +   R  +   R  S   +      K     +     T+  E  
Sbjct: 225 GENGVALYNKDTKYTSKWQWRLTDKTVRTFSCVNKANCYSEKVSLDKNGCASFTLQSEQG 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---- 354
                  +PG+  V NA+ AA + +  G     +   L ++  V GR       ++    
Sbjct: 285 SCVMTLTVPGKHNVCNAVAAAAIALEFGASLEDIQLGLAQMQPVKGRLNLHQLENKKTGC 344

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIA 406
             ++  D Y     S +   + + +    +++++   G      +     +G  A
Sbjct: 345 NVKLIDDSYNANLESAKAAAQLLSSYPGKQLLILGDMGELGSEARSYHQEVGGFA 399


>gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
 gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
          Length = 476

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 82/403 (20%), Positives = 149/403 (36%), Gaps = 29/403 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + I   +  P     + I  +S DSR I+ G  F AI G++ DGH F+  A+A GA   V
Sbjct: 10  DFIAGANGTPKGELGQDITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGTALANGASVAV 69

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS+     D   ++ S    L+VD+    +   A     +    I+AVTG+ GK+     
Sbjct: 70  VSA-----DKLDSLPSTGRYLIVDDPLAAMERLAVASRARSNARIVAVTGSVGKTGTKEA 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASS 191
           ++    RSG     +               +  +   +   L+ + +        +  S+
Sbjct: 125 LRLALGRSGKVHASV--------------ASFNNHWGVPLTLARMPADVDFGVFEIGMSA 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G     +  ++      T +   H+++  + +    AK  +F+ L P    AI+  D+ 
Sbjct: 171 PGEITPLVRMVRPHVAFITTVQAVHLEFFDSVEHIAQAKAEIFKGLEP-GGVAILNRDNN 229

Query: 252 YSKEVMKRAHNAGCR-VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               +M  A     + + + G  Q      + V        V+  + G+   +     G 
Sbjct: 230 QFDLLMFLAKADHVQEIRTFGENQNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVD--YAHTS 366
             V+N+L      + +G + AL  E L  +    GR E        G    +D  Y    
Sbjct: 290 HHVHNSLAVLTAVVELGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANP 349

Query: 367 NSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            S+   L  +        GR I V G   +  +    +  +++
Sbjct: 350 ASMRAALSVLGEAEITPPGRRIAVLGDMRELGEDGPKLHAELS 392


>gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 469

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 97/483 (20%), Positives = 164/483 (33%), Gaps = 51/483 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +Q ++     E++   ++      E  +      DSR  + G +FVA+ G + DGH +  
Sbjct: 1   MQPMLLSTIAEVVGG-TLADAPDPEALVTAPAVFDSRKAEPGALFVALPGEQADGHDYAL 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
            A+  GA A++ +                P ++VD+           L         I+A
Sbjct: 60  SAVKAGAAAVLATRPV-----------GVPAILVDDVLAAFGRLGRHLVAHTLVDTKIVA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK+S    + Q+   +G         +          +  PS  YL         
Sbjct: 109 ITGSAGKTSTKDLIAQLLPAAGRVVATPESFNNEIGLPLTISMADPSTDYL--------- 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + A   G  +             TN+G  HI     +     AK  + E L P
Sbjct: 160 ----VLEMGARGIGHIRDLTRIAPPHISVVTNVGTAHIGEFGGRDKIAVAKGEIVEAL-P 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQ-QVTISVEG 297
               A++ ADD     V+  A     RV S G   +       V      +   T++   
Sbjct: 215 ASGLAVLNADDPL---VLAMAARTTARVSSFGLSDEATVRATDVTVDAFGRATYTLTTPE 271

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G  QV N+L AA +    G+  A + + L            V   + G  
Sbjct: 272 GSAPVSLQLVGAPQVSNSLAAAAVAREAGLSVADIADLLSAATARSRWRMEVSARADGVT 331

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGKRPIMG-----KIALD 408
           +  D Y    +S+   L+ + T+  G     I V G   +     R           ALD
Sbjct: 332 VVNDAYNANPDSMRSSLEALATMARGPEQRAIAVLGKMNELGSESRAAHEGIGRIAAALD 391

Query: 409 LADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-A 465
           L  I  V       E+   +R            +   ++  A++   + L   DV++V A
Sbjct: 392 LDRIVFVG-----GEEAGWMRQAAAAAGAGGRAVHVPDQDAALQHLSDTLRAGDVVLVKA 446

Query: 466 GKG 468
            +G
Sbjct: 447 SRG 449


>gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 503

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 166/473 (35%), Gaps = 40/473 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   +   +   P+      I+ +S D+R ++AG  F AI G++ DGH F+  A   GA 
Sbjct: 7   DVDAMAAAMHARPLGDLPAAISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTAATKAGAA 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             VVS     Q   A  R  +P+L+VD+  K +S  A     +    I+AVTG+ GK++ 
Sbjct: 67  LHVVSE----QKLPALGRVQSPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGKTTT 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++      G                  +  +  +   +  +L+ L       +    
Sbjct: 123 KEALRHGLAAEGKVHA--------------SAASFNNHWGVPLSLARLPRDARFAIFEIG 168

Query: 190 SSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H G  +  +  ++      T +   H+ + +       AK  +FE L+  +  AI+ A
Sbjct: 169 MNHPGEIRPLVKLVRPHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEGLV-SDGTAILNA 227

Query: 249 DDAYSKEVMKRAHNAGC-RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD     +   A  AG   + + G   G    L           +  ++ G+        
Sbjct: 228 DDPQCGPLATMARKAGVTEIRTFGESAGADFRLLSFAPTGEHSVMEANMGGETVRVELTS 287

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--Y 362
            G     N L   G       D   V   L+    V GR   + +   + G    +D  Y
Sbjct: 288 RGRHMAQNVLAVLGAASLAHADLHRVAGALKDWRAVKGRGGRDLLPMPAGGHVELIDESY 347

Query: 363 AHTSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIV 415
                S+     +L   R    GR I V G   +       +       I     D+  +
Sbjct: 348 NANPASMRAALDVLSASRPGEGGRRIAVLGDMLELGDKAPGLHAGLVEPIEAAGVDLVFL 407

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGK 467
             D        K   +++          N  E + + ++ +   DV++V A K
Sbjct: 408 AGD------EMKALDDVLESRVRREWHENAGELLESLLKTMRTGDVVMVKASK 454


>gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria monocytogenes FSL F2-208]
          Length = 346

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 139/358 (38%), Gaps = 29/358 (8%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVP------NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +                              V  
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT-------------EVAV 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +     +      K      TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 175 LEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                  + + ++    N   R L+ G  +   I+  ++ A         + E  + +  
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIF 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S G RI  D
Sbjct: 289 VPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILND 345


>gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora
           bispora DSM 43833]
 gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermobispora bispora
           DSM 43833]
          Length = 455

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 95/460 (20%), Positives = 166/460 (36%), Gaps = 43/460 (9%)

Query: 15  INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           I   ++  +   E  +   V  DSR ++ G +F AI G++ DGH F  +A A GA A++ 
Sbjct: 12  ITSGALNGLADPEAVVRGPVVIDSRAVEPGSLFAAIKGSRADGHDFAQEACAAGAVAVLA 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASF 132
           S              + P ++V +    L+  A+ +  + P   ++ VTG+ GK++    
Sbjct: 72  SRPV-----------DAPAVIVRDVVAALADLAAAVVAELPSVTVVGVTGSQGKTTTKDL 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  + +R G +   +G  +                 +L   LS             A + 
Sbjct: 121 LAGLTERIGPTVAPVGSHNNEIGHPLTVLKADERTRFLVLELS-------------ARNV 167

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +         G   N+G  HI     ++A   AK  L E L P++  A++ ADD Y
Sbjct: 168 GHIAYLTRIAPPRIGVVLNVGAAHIGVFGGREAIAKAKGELVEAL-PEDGVAVLNADDPY 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+  R   A         + +     +      +   T+            L G   V
Sbjct: 227 VREMAGRTR-ARVTWFGRSAEARIRAENETLDERGRASFTLCTPSGSAPVRLRLHGAHMV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
            +AL AA +   +G+    + E L +          V   + G  +  D Y  + +S+  
Sbjct: 286 PDALAAAAVAYELGLPVVAIAEELSRAEPRSRWRMEVTDRADGVTVINDAYNASPDSVRA 345

Query: 372 ILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGK----IALDLADIAIVTDDNPRSEDPE 426
               +R +  G R   V     +  +    +  +     A    +  IV  D+       
Sbjct: 346 AFAALRAMGDGRRRFAVVAAMRELGEAGAELNEEFGRIAAGSGLEALIVVGDD------- 398

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                I+ G PG I   +   A R     L   DV++V G
Sbjct: 399 --AGPILAGAPGAIHVPDTDAAARELASRLAPGDVVLVKG 436


>gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
 gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
          Length = 457

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 177/479 (36%), Gaps = 54/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + +   N+V  DSR +  G +FV + G + DGH FI
Sbjct: 5   MKLT---LHEVAQVLGAKNDISL-YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   G    +             +  + P ++V++    L   A+    K    ++AV
Sbjct: 60  PVAFENGCVVTLSE-----------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G  +                  L          
Sbjct: 109 TGSNGKTTTKDMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL---------- 158

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  I K      T  G  H+++  +++     K+++ + + P
Sbjct: 159 ----VLEMGQDHLGDIHLLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEP 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  +I AD      +  +   +   ++  G Q     L+    + +K  +T +V   D
Sbjct: 215 -GSKLLIPADP-----IADKLLPSHVDLIRFGEQAD---LQVTSLVESKDSLTFTVNFMD 265

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D   P+ G++   NA+VA+ +   +G+    +   L  L++   R E+    + G  I 
Sbjct: 266 GDIFLPVTGKYNATNAMVASYVGKTLGVPDEAIKSALASLNLTRNRTEW-KKAANGADIL 324

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   +I     G+ I V     +       +  ++ L L+   + 
Sbjct: 325 SDVYNANPTAMRLILETFTSIPANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLD 384

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--------IRTAIEMLNKQDVLVVAG 466
           T      +D E +        P       R  A        ++   E L K+D ++  G
Sbjct: 385 TVIF-YGQDIEGLAQLASQMFPIGKVYFFRKNAEQDQFEDLVKQVRESLGKEDQILFKG 442


>gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
 gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
          Length = 468

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 145/393 (36%), Gaps = 31/393 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  I  + +DSRH +AG  F+A+ G + D H F+ Q + QG +  +V     +      
Sbjct: 33  PEGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVVQQGCQVAIVEQPLDV------ 86

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   L+V +TR  L    +    ++P+  ++A+TG+SGK++    +  I  R   + 
Sbjct: 87  ---DIFQLIVSDTRLALGALGAYRRQQYPKLQVIALTGSSGKTTTKEMLGSILSRLAPTL 143

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +                      L          + + AS  G   +    ++ 
Sbjct: 144 VTRGNLNNDLGVPMM-------------LLELRPEHQYAVMELGASHQGEIDYTSKLVQP 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+G  H+     +     AK  +++ +   +  AI+ ADD ++ ++ +      
Sbjct: 191 HVAGILNIGTAHLGEFGGRDGICRAKSEIYQHIAV-DGTAILPADDDFTDQIKQAIQTQ- 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            ++LS G  G+ I+   V       +  +           P  GE  V NAL A    +A
Sbjct: 249 -KMLSFGQDGE-IYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEHNVQNALAATAFALA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGID   +++ L       GR  F+        I   Y     S+      +   T  ++
Sbjct: 307 IGIDLNNIVQGLSAAQGAKGRLNFIQHGHHLF-IDDTYNANPGSMRAAAGVLAQQTGIKV 365

Query: 385 IV---VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +V   +   G         +   +A +  D  +
Sbjct: 366 MVTGDIGELGDASMLEHTQLGHDLANEQLDYIV 398


>gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 345

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 127/368 (34%), Gaps = 38/368 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q RE  I  V +DSR I+ G +FV +VG + DGH +    +  GA A +           
Sbjct: 2   QHRELPIQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRDRGEAPAG 61

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
           A       ++VVD+T   L   A     +    ++ +TG++GK++    V  +       
Sbjct: 62  A-------VIVVDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLSTTYKV 114

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  +  IG   TI                    L   +   +  + +  S     +
Sbjct: 115 HKTGGNFNNHIGLPLTI--------------------LEMPADTEIAVLEMGMSGRHEIE 154

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    ++     AK+ +   + P     I + D+     V
Sbjct: 155 RLSQIARPDVAVITNIGEAHLLQLGSRHEIARAKVEIISGMKP-GGLLIYHGDEPLIPMV 213

Query: 257 MKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  A           + G              H+K  +  S+   +     PL G+  V 
Sbjct: 214 LGEAETVKPEGLGTFTFGLDHSNDDYPTGMMFHSKGIIFTSLLHPEEGLDLPLLGQHNVI 273

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A  +    GI    +   L  LH+   R E +   S    +   Y  +  S++  +
Sbjct: 274 NCLAALAVARHFGITEENIRTGLTGLHLTGMRIEQIVAPSGLTILNDAYNASPTSMKAAI 333

Query: 374 KNIRTITS 381
             + ++  
Sbjct: 334 DALHSLKG 341


>gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 482

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 106/462 (22%), Positives = 182/462 (39%), Gaps = 35/462 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+   +A+GA A++
Sbjct: 13  DAAAWMAGAHLAGPDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVL 72

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS   +    +A   S   +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 73  VSRPPA----AALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 128

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +      +  +    +T  +F  D        I L   L  L+++    V     +H
Sbjct: 129 ISAVFA---CAVGEDARLATAGNFNND--------IGLPLTLFRLNARHKLAVLELGMNH 177

Query: 193 GLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +   L  I +       N  R+H ++  + +A            LP +  A+   D A
Sbjct: 178 PGETEVLATIAQPTVALINNAQREHQEFMVSVEAVAAE-HAAVLAALPADGVAVFPRDAA 236

Query: 252 YSKEV--MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              E   + RA     RVL  G +G  +    V    + Q V +   G  F F+ PL G 
Sbjct: 237 NGGEYAPLWRAAAGTRRVLDFGIEGGAVSAT-VTDTADGQHVDVHAPGLRFSFMLPLLGV 295

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
               NAL A    +A GI   ++ + L     V GR +       GG +  D Y    +S
Sbjct: 296 HNARNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKP-GVHGGLVIDDTYNANPDS 354

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +   +  + T+ + R +V+   G    QG    + I         D  + T +  R    
Sbjct: 355 VRAAIDALATLPAPRWLVLGDMGEVGAQGPAFHQEIGAYARERGIDAVLATGELARH--- 411

Query: 426 EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
             +      G   F       EA I   +  +     ++V G
Sbjct: 412 --VVDAFGGGARHFAS----AEALIEQGVPAIAPGATVLVKG 447


>gi|88607959|ref|YP_506139.1| hypothetical protein NSE_0245 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600128|gb|ABD45596.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 469

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 107/442 (24%), Positives = 193/442 (43%), Gaps = 15/442 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++SD + +   ++F A    KE  H  I +AI +GA +I+ +  Y  +     +  
Sbjct: 14  RIKNITSDPQKVGKDFLFYA-PSEKEHAH--IREAINRGARSILTNQKYEEE----CLAQ 66

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI- 147
                V    ++      S ++ K P  + AVTGTSGK SV  F  Q+C  +G  +  + 
Sbjct: 67  GVNFFVHTQPQQIYHEVCSCMWKKQPAYMCAVTGTSGKRSVGHFFSQVCTLAGKKAVSLS 126

Query: 148 --GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                +      Q+          +   L  L+ + + +  +  S   ++   +D + L 
Sbjct: 127 ASNEPTDALGLWQEKDHMILDAADMYSILDDLAGRRIEYCCLAISGAAIESRMIDSVNLK 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A +F+NL RD ++  +     F  K+RL  E+LP++   ++     Y+  +++   N   
Sbjct: 187 AAAFSNLLRDDLEQPEDIDKRFQMKVRLLSEVLPEDGIMVLPVASEYTTRIIQHCPNK-- 244

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +V + G     I L         Q +T+ V GK+      + G+F   N + A GL I+ 
Sbjct: 245 KVCTYGRATSDIQLISQLPTQKGQILTMKVLGKEMVIHTNILGKFHGNNLVTAMGLAISC 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRI 384
           GID + +    E++  + G  EF+       +I  D A T + L  +L +I+       +
Sbjct: 305 GIDPSSIEH--EQISPLAGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDV 362

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            +V  C  + +      M KIA  + +  I T D+  S   EK R E++   P  IE  +
Sbjct: 363 TLVLRCSENYEGKNTLKMAKIAAKMVNRIIFTSDSNGSTLTEKSRRELMSCCPKAIEIED 422

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
           R +A+  AI      +++V+ G
Sbjct: 423 RKKAMEYAINNCKPSEIIVMQG 444


>gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 479

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 166/480 (34%), Gaps = 52/480 (10%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +    + +   +R +   V +DSR +  G +F A  G + DGH F  +
Sbjct: 1   MIALSLAEIAAIVGGQSYDIPDADRLVTGPVVTDSRRVGPGSLFTAFAGERADGHDFAER 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA A++ +                P +VVD+    L   A  +  +     +A+TG
Sbjct: 61  AVADGAVAVLATRPV-----------GVPAIVVDDVTAALGALARHVVERLGTTTVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R G + +  G  +              S  +L            
Sbjct: 110 SAGKTSTKDLIAQLLERKGPTVYPEGNLNNEIGLPLTALRADESTEHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             + + A   G  ++    +    G   N+G  H+    +++    AK  + E L    +
Sbjct: 158 -VLEMGARYIGDIRYLTGLVPPRIGLVLNVGTAHLGEFGSRERIAEAKGEMVESLPSGEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQ-QVTISVEGK 298
              A++ ADD   + + +R      RV+  G +    I    V      +   T+     
Sbjct: 217 GGVAVLNADDPLVRAMAERTR---ARVVLFGEHSSADIRAANVRLTRQGRPAFTLHTPTG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  I
Sbjct: 274 CSDVTMRLYGEHHVSNALAAAAVAHELGLSADEIALALSEAGTLSRWRMEVTERPDGVTI 333

Query: 359 YVD-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGGDRDQGKRPIMGKIA----- 406
             D Y     S+   L+ +  +        GR   V G   +           +      
Sbjct: 334 VNDAYNANPESMRAALRALAAMGQGAQSRGGRTWAVLGLMAELGDEALAEHDAVGRLAVR 393

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+++ +  V       E           G      +   +   A+      L   DV++V
Sbjct: 394 LNVSKLVAVGG----REASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 449


>gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
 gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
          Length = 466

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 146/448 (32%), Gaps = 41/448 (9%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   V  DSR   AG +FVA  G K DGH +               +  ++         
Sbjct: 26  VTGPVEFDSRKAGAGGLFVAFPGEKVDGHDYAAA----------AVAGGAVAVLGTREVP 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             P+++V +    +   A  +  + P   ++ +TG+SGK++    + Q+  R G +    
Sbjct: 76  GVPMVLVGDALDAMGRLARAVVDRLPALTVIGLTGSSGKTTTKDLIAQLTVRLGPTVAPP 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +                 +L              +   A   G  ++  + +     
Sbjct: 136 GSFNNELGHPWTALQADQDTRFL-------------VLEKGARGVGHVRYLCEVVPPRIS 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H+    + +    AK  L E L P +  A++ ADD     +  R      R 
Sbjct: 183 VVLNVGVAHLGEFGSVENIALAKGELVESL-PADGLAVLNADDPLVDVMAARTAARVVR- 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      +        +   T+            L G  QV N+L AA +   +G+
Sbjct: 241 YGEAAHADVRAVDVTLDGRGRAAYTLVTPEGSAAVRLGLTGRHQVSNSLAAAAVARELGM 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRII 385
             A +   L +L +V  R   V     G  +  D Y     S  + L+ +  +   GR +
Sbjct: 301 PLAELAAALGELGLVSTRRMDVFERPDGVTVIDDSYNANPASTAVALRALAGMRGAGRAV 360

Query: 386 VVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA---EIIHGIPG 438
            V G     G    QG   +    A    D  +V       E    I      +      
Sbjct: 361 AVLGYMAELGEYERQGHLEVGRLAAELGVDRLLV-----VGEPAAPIHEGATAVEDWGGE 415

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   ++  A+      L   DV++V G
Sbjct: 416 SVLLTDQAAAVEVLRSELRPGDVVLVKG 443


>gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 463

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 93/462 (20%), Positives = 180/462 (38%), Gaps = 31/462 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  + ++NE+S+D+R ++   +FV ++G   DGH FI QA+ +GA   +V      Q+F
Sbjct: 19  LEGTKDQVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQAMERGAIGALVQKG---QEF 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                ++  ++ V++T + L               + VTG++GK++    +  I +    
Sbjct: 76  PLGKLNDFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGKTTTKDMIAGILE---- 131

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                     +     +       P+ L    +      +  + +  +S G        +
Sbjct: 132 ------TNFNVLKNEGNLNNQIGLPLTL---FNLEPCHEIGVLEMGMNSLGEILSLAKTV 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+G  HI++  +Q+    AKM +   L  K+   +I  DD + K V + +  
Sbjct: 183 QPHIAVITNVGFSHIEHLGSQENILTAKMEITTRLREKD-YLLINGDDPFLKTVKEESKT 241

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +           VC      +  + ++ K   F    PG   VYN LVA  + 
Sbjct: 242 YRIITFGIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLVALWVG 301

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   +    + +  ++L +   R E V T      I   Y  + +S++  +  +   T  
Sbjct: 302 LHYQMTPLAIQKGFDRLELSKMRLEIV-TYGDVKVINDAYNASPDSMKAAITVLNQSTGI 360

Query: 383 RIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIP 437
           R I     +   G   ++G R I   IA    D  I        +  + I  E +  G  
Sbjct: 361 RKIAILGDILEMGSFAEEGHRRIGSFIATSPVDYLIT-----VGKSAQWIAREAVEQGFS 415

Query: 438 G--FIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                +  +   AI+    +L+ +DV++V G +G +   IV 
Sbjct: 416 QAHIYQTPSNDLAIKVLKTLLSPRDVVLVKGSRGMKMEEIVN 457


>gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
 gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
          Length = 448

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 81/405 (20%), Positives = 149/405 (36%), Gaps = 35/405 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ  + +    L  Q    P     +++  V++D+R ++   IF+A  G   DGH F 
Sbjct: 1   MTLQAPLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFA 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ QGA A +V            I + TP LVV +T             +    I+A+
Sbjct: 61  ESAVQQGAIAAIVDHP---------IDAATPQLVVPDTLVAYQRLGQWWRQQFQIPIIAI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +   +G          T +++  +  +           L   +  
Sbjct: 112 TGSVGKTTTKELISAVLGTAGS------VLKTEANYNNEIGVP-------KTLLGLTADH 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G         +   G  TN+G  HI    +++A   AK  L  + +P 
Sbjct: 159 DYAVVEMGMRGPGEIAELSQIAQPTIGVITNVGTAHIGRLGSREAIAQAKCELLAQ-MPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ES A++ AD++   E  +   +     ++ G     +           Q    +++  D 
Sbjct: 218 ESLAVLNADNSLLIETAQTVWSGAQ--VTYGLDSGDL---------QGQLADQTLQVADH 266

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  PLPG     N L A  +   + +D A + + +  L +  GR   +   +    +  
Sbjct: 267 SFPLPLPGAHNALNYLAALAIAQHLHLDLAPLQQGIS-LELPSGRARKLTLPNDVVVLDE 325

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            Y     S++  L  +      R I V G   +  +    +  ++
Sbjct: 326 TYNAGLESMQAALHLLAQTPGERRIAVLGPMKELGEYAAELHRQV 370


>gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14]
          Length = 453

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 177/479 (36%), Gaps = 54/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + +   N+V  DSR +  G +FV + G + DGH FI
Sbjct: 1   MKLT---LHEVAQVLGAKNDISL-YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   G    +             +  + P ++V++    L   A+    K    ++AV
Sbjct: 56  PVAFENGCVVTLSE-----------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G  +                  L          
Sbjct: 105 TGSNGKTTTKDMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL---------- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  I K      T  G  H+++  +++     K+++ + + P
Sbjct: 155 ----VLEMGQDHLGDIHLLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEP 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  +I AD      +  +   +   ++  G Q     L+    + +K  +T +V   D
Sbjct: 211 -GSKLLIPADP-----IADKLLPSHVDLIRFGEQAD---LQVTSLVESKDSLTFTVNFMD 261

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D   P+ G++   NA+VA+ +   +G+    +   L  L++   R E+    + G  I 
Sbjct: 262 GDIFLPVTGKYNATNAMVASYVGKTLGVPDEAIKSALASLNLTRNRTEW-KKAANGADIL 320

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   +I     G+ I V     +       +  ++ L L+   + 
Sbjct: 321 SDVYNANPTAMRLILETFTSIPANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLD 380

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--------IRTAIEMLNKQDVLVVAG 466
           T      +D E +        P       R  A        ++   E L K+D ++  G
Sbjct: 381 TVIF-YGQDIEGLAQLASQMFPIGKVYFFRKNAEQDQFEDLVKQVRESLGKEDQILFKG 438


>gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
 gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
          Length = 455

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 157/472 (33%), Gaps = 47/472 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L        ++   I      +     VS DSR + AG +FVA+ G + DGH ++  
Sbjct: 2   LKPLSLSQLTTALSGRQI----GADATFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLAD 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             A+GA A +V    +          + P L+V + R  L    +       + ++A+TG
Sbjct: 58  VKAKGAVAALVEREVA--------DVDLPQLLVADCRLALGQLGALNRAAFDKPVVAITG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   +  I +  GL     G  +                      L        
Sbjct: 110 SSGKTTVKEMLASILRTRGLVHATRGNLNNDLGAPLT-------------LLEIAPEHSA 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS  G  ++ +   +       N G  H+      +    AK  + E L  +  
Sbjct: 157 AVIELGASRIGEIRYTVGLTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGL-GEGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD 301
            AI+  DD        RA +      +        H   +           +   G+  D
Sbjct: 216 IAILNLDDKAFAIWSARAGSHKVVSFARSNPKADFHATDIGRDARGCPSFKLHGAGETVD 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + GE  V NAL AA    A+G+    +   L  +  V GR         G R+  D
Sbjct: 276 VQLNVLGEHNVSNALAAAAAAHAVGLSLNGIAAGLAAVQPVKGR-TVAQIAPNGVRVIDD 334

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            Y    +S+   +  +   +   ++V+   G          +G+ A +         D  
Sbjct: 335 SYNANPSSMCAAIDILAGFSGRTVLVLGDIG---------ELGQWAEEGHRQV---GDYA 382

Query: 421 RS--EDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           R   +    + + + H +  F         + E I            +++ G
Sbjct: 383 RGKVDALYAVGSNMTHAVKAFGANGRHFATQAELIDAVSAEHASDTTILIKG 434


>gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 451

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 96/422 (22%), Positives = 166/422 (39%), Gaps = 43/422 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+     D  ++++   I      + +I  VS+D+R +  G +FVA+ G + D H F 
Sbjct: 2   MTLR---LADLAQVLDARLI----GEDGEITTVSTDTRTLGKGALFVALRGERFDAHDFC 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+A GA A++V    SL           P LVV ++ K L      +  +    +LA+
Sbjct: 55  DQAVAAGASALLVERELSLA---------IPQLVVTDSLKGLGHIGKLVRERINPKVLAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V      I +  G      G                         L      
Sbjct: 106 TGSCGKTTVKEMTTAILRHEGEVLATAG-------------NFNNEVGVPLTLLRLEPQH 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G         +  A    N+   H++   + +  F+AK  +FE L  +
Sbjct: 153 QFAVMELGANHPGEIAWTTSLARPDAALINNVAAAHLEGFGSLEGVFHAKSEIFEGL-SE 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +  AI+ AD A+  +   +A    C   S+  Q +  H + +        +  +     +
Sbjct: 212 QGTAIVNADSAFWPKW--QAAGIHC-AFSIEDQNQPFHARGIALNGQGCAEFVMVTPNGE 268

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG   V NAL AA  C+A+G   A V   LE++  V GRF        GG   
Sbjct: 269 LSLTLAIPGRHNVANALAAAAGCLALGASLASVKAGLEQMAPVKGRFC---VQRWGGLTL 325

Query: 360 VDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAI 414
           VD  + +   S+   +  +  +  G  ++VFG      +    +   +G+ A +    A+
Sbjct: 326 VDDTYNASVESVLAGIDALTAM-GGYKVLVFGDMKELGEESAEQHARVGRHASECGLDAV 384

Query: 415 VT 416
           +T
Sbjct: 385 LT 386


>gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
 gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
          Length = 437

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 103/441 (23%), Positives = 164/441 (37%), Gaps = 49/441 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L       L+N     P     + I  + +D+R +Q G IF+A+ G K DGH F+  
Sbjct: 7   LSQLAAVLSASLLN----IPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFVEM 62

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AIA+GA A +V   Y           N P++ V NT       A    G+    ++ VTG
Sbjct: 63  AIARGAVAAIVDYTYD--------YPNLPVIKVSNTLNAYQELAKWWRGQFGIPVIGVTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +  +    G          T  +F         + I + K L  LS  G 
Sbjct: 115 SVGKTTTKELIASVLGTRGKVH------KTYGNF--------NNEIGVPKTLLELSE-GD 159

Query: 183 THVSVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +E +  G  Q        K   G  TN+G  HI+   ++QA   AK  L  E +P 
Sbjct: 160 DFAVIEMAMRGRGQIGELTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAE-MPN 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +S A++  D+       K+  +    V+S G+ G  I  K V            +E    
Sbjct: 219 DSVAVLNYDNPLLMTTAKQVWSG--EVISYGFSGGDIQGKLVDYQ--------KIEVGGM 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G     N L A  +   + +D  L+   +  + +  GR +          +  
Sbjct: 269 TLPLPLTGVHNGSNFLAALAVAKVLDVDWKLLEAGI-NVTMPQGRSQSWKLPKDIMILDE 327

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVT 416
            Y     ++   L+ +      R I V G   +  +    +  ++   +     D  +V 
Sbjct: 328 TYNAAPEAMLAALELLAQTPGRRKIAVLGAMKELGERSAKLHQQVGETVRKLNLDGLLVL 387

Query: 417 DDNPRSEDPEKIRAEIIHGIP 437
            D P +E    I A    GIP
Sbjct: 388 VDGPDAE----IIATSAQGIP 404


>gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R]
 gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 514

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/460 (19%), Positives = 166/460 (36%), Gaps = 40/460 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SATIR 87
           + V  DSR +  G +F+A+ G + DGH F   AI +GA A++ +    +         I+
Sbjct: 29  SSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREVDVPAIVVPPVKIQ 88

Query: 88  SNTPILVVDNT-------RKFLSLFASRLYG----KHPENILAVTGTSGKSSVASFVQQI 136
            +   +   +         + LS  A  +       H  N++A+TG++GK+S   F+  +
Sbjct: 89  ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATV 148

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             + G +    G  +            T    YL    + +S++G+ H           +
Sbjct: 149 LGQDGPTVAPPGSFNNELGLPHTALRCTTDTKYLV---AEMSARGIGH----------IK 195

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSK 254
           H  +       +  N+G  H+    +++    AK  + E L  K     A++ ADD +  
Sbjct: 196 HLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPFVA 255

Query: 255 EVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            +  R         +   Q     +           +   T++ +   +     + GE Q
Sbjct: 256 RMAPRTKARVVWFSTDAGQANKSDYWATSISLDAVARASFTLNTKDGSWPVALQVFGEHQ 315

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V NAL AA + +  G+   LV+  LE           V T + G  I  D Y    +S+ 
Sbjct: 316 VANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMDVKTRADGVTIINDSYNANPDSMR 375

Query: 371 MILKNIRTITSGR----IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +  +    SGR       V G  G+          ++  +LA    V +     E+P 
Sbjct: 376 AGIAALAYTASGRSEATSWAVLGQMGELGDDASEAHAELGAELAKYN-VQELVAVGENPN 434

Query: 427 KIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVV 464
                      G       +   A+      + + DV++V
Sbjct: 435 CAALAESAASLGVSTHVVSDVDAALELLAGHIKRDDVVLV 474


>gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine
           bacterium HP15]
          Length = 462

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/390 (21%), Positives = 145/390 (37%), Gaps = 28/390 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+D+R ++ G +FVA+ G   DGH F+ QA+ +GA  +VV +  +         
Sbjct: 26  VSFAGVSTDTRTLEPGQLFVALRGENFDGHRFLQQAMDKGAVGLVVDTPDTNLAL----- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P LVV+ T + L+  A+    +    ILA+TG+SGK++V      I  + G +    
Sbjct: 81  ---PQLVVNETLEALARLAAANREESTAAILAITGSSGKTTVKEMCAAILSQMGKTLSTK 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G          +       P+ L              + + AS  G   H +   K    
Sbjct: 138 G----------NLNNHIGVPLTLFGL---SPEHQYGVIELGASGLGEIAHTVALAKPRVA 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN G  H++   + +    AK  + +  +  +   ++  DD    +   RA     RV
Sbjct: 185 ILTNAGEAHLEGFGSYENIVLAKGEIIDG-VASDGLMVLNGDDPAFAQWRSRAGAR--RV 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGLCIA 324
             V   G       V    +    T  V G D         L G+  + N L+A      
Sbjct: 242 AGVSRLGAEADYHAVIDGQDAGTRTFQVSGPDGWLCRVTLGLEGDHNITNMLLAIAATRE 301

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G     ++  L  +  V GR + +  +     I   Y    +S++  L  +    +G+ 
Sbjct: 302 LGASDQAIVAGLASVAPVKGRLQVLELSPEMTLIDDSYNANPSSMKAALG-VLAGRAGQK 360

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           I V G   +       +  ++ +   +  I
Sbjct: 361 IAVLGAMAELGAKANALHREVGVCAREHGI 390


>gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
 gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
          Length = 459

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 144/386 (37%), Gaps = 25/386 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
             N V++D+R +  G +FVA+ G   DGH F+ +A  QGA A VV               
Sbjct: 27  TFNAVNTDTRSLLPGQLFVALRGENFDGHRFLQKAQEQGASAAVVDC--------IDAAV 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P L+V +T   L   A+R        ++A+TG+SGK++V      I Q+ G +    G
Sbjct: 79  DLPQLLVSDTLIALGELATRHRATSNATLIAITGSSGKTTVREMTGAILQQMGPALITQG 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +       P+ L              + + AS      + +  +K     
Sbjct: 139 ----------NLNNHIGVPLTLFGL---APEHRFGAIELGASGLNEIAYTVAMVKPQVAI 185

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN G+ H++   + Q    AK  + +  +  +   ++  DD    + + RA     RV 
Sbjct: 186 LTNAGQAHLEGFGSYQNIVLAKGEIIDG-VADDGLVVLNRDDPAFDQWLVRAGRR--RVA 242

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           SV   G      KV A    Q      +G   D    L GE  + NA +AA     +G  
Sbjct: 243 SVSRAGHAGADYKVIAGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAMAAAAARELGAT 302

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  +   LE++  V GR            I   Y     S++  L  +        I V 
Sbjct: 303 NEHIKAGLEQVLAVKGRLHIQPLAQGWTLIDDSYNANPASIKAAL-AVLAKRPSPRIAVL 361

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAI 414
           G   +  +    +  ++A    D+ I
Sbjct: 362 GAMAELGEQAAQLHREVAQYARDLGI 387


>gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
 gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
          Length = 481

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 177/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEVMEGRPFGNLPAGVTGISIDSRALKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  +       T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVCPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK150]
          Length = 456

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/479 (20%), Positives = 178/479 (37%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  E+++  +    Q+    +     DSR I+ G +FV + G + DGH FI
Sbjct: 1   MKL---YLYEIAEVLSAKNDVT-QFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  QGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  ATAFTQGAAATLSERPVAE----------GAYILVDDVLTAFQRLAKYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKNSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+  A + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVSEAAIAQAFSELKLTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLTPTDQILLKG 439


>gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
 gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
          Length = 454

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 155/444 (34%), Gaps = 45/444 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +IN + +D+R + +G +F+A+ G   DGH FIPQA+  GA A+V             
Sbjct: 26  EDIRINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDRPVE------G 79

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +       +V++T       A+    +    I+ VTG+ GK++    +  +  + G    
Sbjct: 80  LGETVAQFLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFG---- 135

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                    +  +               L          V +     G      D  K  
Sbjct: 136 ---------NVHKTRANYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPT 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  HI    ++ A   AK  L     P ES AI+  D+A   E  +R      
Sbjct: 187 IGLITNVGTAHIGLLGSELAIAEAKCELLAHQ-PPESTAILNRDNALLMETAQRF--WQG 243

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + ++ G +G  +H            V++           PL G     N L A  +   +
Sbjct: 244 KTITYGLEGGDVHGTVDGENLILDGVSL---------PLPLAGVHNASNYLAAIAVAQCL 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D   +   L  + +  GR            +   Y     S+   L  +      R +
Sbjct: 295 GLDWQQLQSGL-TVELPKGRARRYQWGQDVVLLDETYNAGLESMLASLDLLANTPGKRRL 353

Query: 386 VVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GF 439
            V G     G       + +  K+     D   +  ++P +   + I A   +G+    F
Sbjct: 354 AVLGAMKELGDYGPTFHQRVGAKVKALGLDGLFLLANDPNT---DAIAAG-ANGVETQSF 409

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLV 463
            +  + + A++T    L   D L+
Sbjct: 410 SDGPSLVAALKT---TLQPGDRLL 430


>gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 497

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 158/407 (38%), Gaps = 30/407 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+AQGA  ++V               + P ++V+NT   L+  A+ +       ++A+
Sbjct: 55  ADAVAQGASGLLVDR--------LLPALSVPQVLVENTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I + +G            ++   +              ++     
Sbjct: 107 TGSNGKTSVKALLLSILEEAGRVDG--------TTVYANPGNRNNEIGLPLAVIAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V    + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DVAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVARTKSAIYAAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++ H       RVL  G Q    +  + +       Q T+   
Sbjct: 218 DGVAVINADDAFGAWFEQQLHAQPVHGRRVLRYGLQASADLTARGLRLQDGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL AAGL +  GI   ++   L +   V GR +   T S G 
Sbjct: 278 QGEAQIALPLPGRHNVLNALAAAGLALGAGIALPIIAAGLAQARPVAGR-QIAHTLSSGA 336

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            +  D Y     SL+  +  +     G   +V G   +     + + 
Sbjct: 337 VLIDDSYNANPGSLDAAIDTLAA-APGAGWLVLGDMRELGPEGKALH 382


>gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
 gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
          Length = 454

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/457 (21%), Positives = 171/457 (37%), Gaps = 41/457 (8%)

Query: 11  FPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E+++  S+        K++  + +D+R +Q G +FVA+ G K DGH F+  AI +GA 
Sbjct: 10  LVEILSASSVNLSASALTKVSKSIQTDTRILQPGEVFVALRGEKFDGHEFVAMAIVKGAI 69

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +V  AY    F        P+L V +T K            +   ++ VTG+ GK++ 
Sbjct: 70  AAIVDYAYENPVF--------PVLQVTDTLKAYQQIGRWWRDSYSIPVIGVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +    G          T  +F  +  +           L   +      + +  
Sbjct: 122 KELIAAVLATKGQVH------KTYGNFNNEIGVP-------KTLLELGAEHDFAVIEMAM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G         +   G  TN+G  HI+   +++A   AK  L  E +P +S AI+  D
Sbjct: 169 RGRGQIAELTQIARPTIGVITNVGTAHIELLSSEEAIAEAKCELLAE-MPNDSVAILNYD 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                E  K+      +V+S G+ G  I  K +         T+ V G       PLPG 
Sbjct: 228 SPLLMETAKKF--WQGKVISYGFSGGDIQGKLIDNE------TVEVAG--IGLPLPLPGR 277

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A  +   + ID   +   +  +++  GR +     +    +   Y     ++
Sbjct: 278 HNATNFLAALAVAKVLEIDWQSLQAGVI-VNMPNGRSQRFTLPNDVIILDETYNAAPEAM 336

Query: 370 EMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L+ +  I   R I V G      +R Q     +G++   L    ++   +  S+D E
Sbjct: 337 LAALQLLADIPGKRKIAVLGVMKELGERSQQLHQQVGEMVQKLNLDGLLLLVD--SKDAE 394

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I      GIP      +  + I      +   D L+
Sbjct: 395 FIANS-AKGIPCECFATH-ADLIARLKTFMQAGDRLL 429


>gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
 gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
          Length = 465

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 152/421 (36%), Gaps = 32/421 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+    +   E   Q         +  I  + +DSRH + G +F+A+ G + D H F+ Q
Sbjct: 11  LEPWTPEQLQE-ATQGEWLHGNIPQGAIKRILTDSRHAEVGDVFLALKGERFDAHDFVAQ 69

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVT 121
              QG +  +V            I  +   LVV +TR  L    +    ++    ++A+T
Sbjct: 70  VATQGCQIAIVEHP---------IDVDIAQLVVKDTRLALGDLGAYRRKQNAHLKVIALT 120

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK++    +  I  R   +    G  +                      L       
Sbjct: 121 GSSGKTTTKEMLGSILSRLAPTLITRGNLNNDLGVPMM-------------LLELRKEHQ 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + AS  G   +  + ++       N+G  H+     ++    AK  ++  +LP+ 
Sbjct: 168 YAVMELGASHQGEIDYTSNLVQPHVAGILNIGTAHLGEFGGREGICRAKSEIYAHILPQ- 226

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI+ A D ++ ++   A       LS G QG  ++  ++       +  +        
Sbjct: 227 GVAIVPAADDFTADIRNSAQAHSN--LSFG-QGGDVYATEIELKPQSVRFNLHTPQGQRV 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  GE  V NA  A    +AIGI+   ++E LE+     GR  F+   +    I   
Sbjct: 284 VNLPFAGEHNVQNATAATAFALAIGIELDDIVEGLEQAQGAKGRLNFIQHQNHLF-IDDT 342

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDD 418
           Y     S+    + +      +++V+   G   D        +   +A    D  +V  +
Sbjct: 343 YNANPTSMRAAAQVLLQQQGLKVMVMGDIGELGDSSWQEHHDLGRDLAALALDQIVVVGE 402

Query: 419 N 419
            
Sbjct: 403 Y 403


>gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
 gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
          Length = 455

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/408 (19%), Positives = 136/408 (33%), Gaps = 28/408 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L   L    +   +     VS DSR + AG +FVA+ G + DGH ++    A+GA A
Sbjct: 7   LSQLTTALKGQHIGG-DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    +          + P L V + R  L    +       + ++A+TG+SGK++V 
Sbjct: 66  ALVEREVA--------DVDLPQLQVADCRLALGQLGALNRAAFDKPVVAITGSSGKTTVK 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +  GL     G  +                      L          + + AS
Sbjct: 118 EMLASILRTRGLVHATRGNLNNDLGAPLT-------------LLEIAPEHSAAVIELGAS 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  ++ +   +       N G  H+           AK  + E L  +   AI+  DD
Sbjct: 165 RIGEIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGL-GQGGIAILNLDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGE 309
                   RA        +        H   +          T+   G+       + GE
Sbjct: 224 KAFDIWKARAGAHKVVSFARSNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGE 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AA    A+G+  + +   L  +  V GR         G R+  D Y     S
Sbjct: 284 HNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGR-TVAQIAPNGVRVIDDSYNANPTS 342

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAI 414
           +   +  +   +   ++V+   G      +     +G  A    D   
Sbjct: 343 MCAAIDILAGFSGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390


>gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum GMI1000]
 gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum GMI1000]
          Length = 482

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 101/449 (22%), Positives = 174/449 (38%), Gaps = 33/449 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V++DSR +  G +FVA++G + D H F+P  +A+GA A++VS          
Sbjct: 25  GPDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPP----VGI 80

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              S   +L V +TR  L   A+    + P  ++AVTG++GK++V   +  +   +   +
Sbjct: 81  PDLSGVAVLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMISAVFACAVGEA 140

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
            ++     +++            I L   L  L++Q    V     +H  +   L  I +
Sbjct: 141 ARLATAGNLNN-----------DIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAIAQ 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAH 261
                  N  R+H ++  + +A            LP +  A+   D A   E   + RA 
Sbjct: 190 PTVALINNAQREHQEFMVSVEAVAAE-HAAVLAALPADGVAVFPRDAANGGEYAPLWRAA 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               RVL  G +G  +    V    + Q++ +   G  F F  PL G     NAL A   
Sbjct: 249 AGTRRVLDFGIEGGAVSAA-VTDTADGQRIDVHAPGLRFSFTLPLLGVHNARNALAATAC 307

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A GI   ++ + L     V GR +    +  G  I   Y    +S+   +  + T+ +
Sbjct: 308 ALAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAAIDALATLPA 367

Query: 382 GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R +V+   G    QG    R I         D  + T +  R          ++    G
Sbjct: 368 PRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELAR---------HMVEAFGG 418

Query: 439 FIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
                   EA I   +  +     ++V G
Sbjct: 419 GARHFASAEALIEQGVPAIAPGATVLVKG 447


>gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 528

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 166/464 (35%), Gaps = 51/464 (10%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   V  DSR   AG +FVA  G   DGH F+  A+ +GA A++ +   + +    T R 
Sbjct: 34  VTGPVVFDSRDAAAGALFVAFPGEAADGHDFVQAAVDKGAVAVLAAPDDAYRK-PWTARG 92

Query: 89  NTPILVV--DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + P + V   +  + LS  A+    + P   ++ +TG++GK++    + ++ +  G +  
Sbjct: 93  SVPTVTVGDGDLLRALSALATAHLARLPRTTVIGLTGSAGKTTTKDLIGRLTRELGPTVA 152

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +    F      T     YL    + + ++G+ H           +H        
Sbjct: 153 PKGSFNNELGFPITVLRTDEDTRYLV---AEMGARGIGH----------IKHLTTIAPPR 199

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMK 258
            G   N+G  H+    + +A   AK  L   +         ++  AI+ ADDA  + +  
Sbjct: 200 IGVVLNVGSAHLGEFGSVEAIAEAKGELAAAVPESGNCNPDRDGVAILNADDARVRGMAA 259

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------FDFLFPLPGEFQV 312
           R      RV+  G         +   + +  + + ++  +D      +     L GE QV
Sbjct: 260 RTKG---RVVLFGESPDADVRAEDVRVGSDGRASFTLLYRDGEGPHRYPVALRLVGEHQV 316

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
            NAL AA   + +G+    V E L            +G ++ G  +  D Y     S+  
Sbjct: 317 SNALAAAATGLELGLAGEKVAEVLSAAEPDSKWRMAIGESADGVTVLNDAYNANPESMRA 376

Query: 372 ILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            LK + T+       R   V G   +           +      + I      ++     
Sbjct: 377 ALKTLATMARARPGARSWAVLGTMAELGDDSAVEHDAVGRLAVRLNI-----AQTVAVGA 431

Query: 428 IRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A I  G           +   +   A+          DV++V
Sbjct: 432 GAAAIHSGASMEGSYNGESVAVPDADAALAFVRAGARPGDVVLV 475


>gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1]
          Length = 456

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 102/479 (21%), Positives = 183/479 (38%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  PTAFAQGAAATLSEHPVAE----------GAYILVDDVLTAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKNSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEIIH-GIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K ++    E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPLGKVHYFIKNDQKDQFEQLTKAVREKLTPADQILLKG 439


>gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1056]
          Length = 456

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 101/479 (21%), Positives = 180/479 (37%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I+   +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVALRNAEFDSRLIEPDDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  PTAFAQGAAATLSERPVAE----------GAYILVDDVLMAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKNSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEIIH-GIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPLGKVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKG 439


>gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 453

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 157/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F+ QA+A GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 460

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/485 (17%), Positives = 190/485 (39%), Gaps = 44/485 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYG------TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   ++ I + +       G  ++                +L          
Sbjct: 117 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILE------- 169

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  S  G  ++     +      T +G+ H++   +++    AK+ + + L  +
Sbjct: 170 ------MGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGL-RE 222

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +   D+        +  +  C+  S   +     L       ++  V   +     
Sbjct: 223 NGLFLYNGDEPLLSRN-NKTSSVNCKTFS---EKDTNDLFPTNVQLDEYGVHFKLNHTKI 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+ T   G  I  
Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFL-TAKIGFTIIN 337

Query: 361 D-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIV 415
           D +  + +S++  ++ ++ +    + I+V G   +   + +     +GK+  +     + 
Sbjct: 338 DAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVF 397

Query: 416 TDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETV 472
           T      E  E +  E      I       N+ E     ++++ + DV+++ G +G    
Sbjct: 398 T----YGELAEFVAEEARKNYHIGKVQSFDNKAEIAEEVLKIITQNDVVLLKGSRGMALE 453

Query: 473 HIVTN 477
            IV  
Sbjct: 454 EIVQK 458


>gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1087]
          Length = 456

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 182/479 (37%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +     +              ++VD+        A     K   +++AV
Sbjct: 56  PTAFAQGAAATLSERPVAE----------GAYILVDDVLTAFQRLAQYYLEKMQVDVVAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAHLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+  A + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYTALQEGVSEAAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKG 439


>gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
 gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
          Length = 457

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 166/451 (36%), Gaps = 27/451 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++++  DSR   A   FVAIVG   DGH F+  A   G +  +     +  +      S+
Sbjct: 26  VSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGCKTFI----KNESNGIKLESSD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T   L   +     K     + VTG+ GK++    +             I  
Sbjct: 82  INLIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVGKTTTRDMIYSA----------ISA 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              I    ++       P+ L    +         + +  S     ++ +D +       
Sbjct: 132 KLNILKNEKNLNNHFGVPLTL---FNLSKEHECAVIEMGMSGFNEIKYLVDIVNPKIAVI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +N+G  H++   +Q+    AKM +      + +  I+  DD +   + ++ H    +   
Sbjct: 189 SNIGLSHVEKLGSQEGILKAKMEITSNF-DEANTLIVNGDDKFLSTLKEKEHVYKLKTFG 247

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +   I+ +      +       + GK  +   P  GE  +YNA+ A  + + + I  
Sbjct: 248 FN-KNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGLCLNISL 306

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV--- 386
             + + L+       R + +  N +   I   Y  + +S++  LK +      R+ +   
Sbjct: 307 DYIKKGLKNFKGTKMRLDIIK-NEKLTIINDSYNASPDSMDAALKILGRYKGRRVAILGD 365

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           +   G   + G R ++GK +++  DI I   +N       +   ++           NR 
Sbjct: 366 ILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVF--IGEEAKQLGFNSANIYHFENRE 422

Query: 447 EAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
           +      E++   D ++V G +G     IV 
Sbjct: 423 DVFNKLNELVKTGDTILVKGSRGMRLEKIVE 453


>gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 460

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 154/411 (37%), Gaps = 30/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+   I +    +   +     +  + ++N V  D+R +  G +F+ + G   DGH FI
Sbjct: 1   MKMT--IGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A + +S     D +  +    P LVVD+        +     K    ++AV
Sbjct: 58  ENAIKGGAVATLWAS-----DHTNRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +   T T  +F  +  +           L   S+ 
Sbjct: 113 TGSNGKTTTKDMIASVLS------GEFNVTKTYDNFNNEIGVP-------YTILQMESNT 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G        ++      T +G  HI++  T+    +AKM +    L  
Sbjct: 160 DFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEI-THGLKA 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   I   D+     +++RA       ++ G      +   K           +++   D
Sbjct: 219 DGYFIYDGDEPL---LIERAKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPD 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++ V NAL A  +     I    +++ L    +   R E++ T ++G +I 
Sbjct: 275 KKVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWL-TGNKGEKIL 333

Query: 360 VD-YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            D Y     +   +L    +T   GR IVV G   +       +   +A D
Sbjct: 334 SDVYNSNPTAAREVLTAFSQTDVMGRRIVVLGDMLELGDKSSQMHASLAND 384


>gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
 gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
          Length = 481

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 90/475 (18%), Positives = 177/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRTLKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   ++   +       L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFDENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHLEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 460

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 154/411 (37%), Gaps = 30/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+   I +    +   +     +  + ++N V  D+R +  G +F+ + G   DGH FI
Sbjct: 1   MKMT--IGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A + +S     D +  +    P LVVD+        +     K    ++AV
Sbjct: 58  ENAIKGGAVATLWAS-----DHTDRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +   T T  +F  +  +           L   S+ 
Sbjct: 113 TGSNGKTTTKDMIASVLS------GEFNVTKTYDNFNNEIGVP-------YTILQMESNT 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G        ++      T +G  HI++  T+    +AKM +    L  
Sbjct: 160 DFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEI-THGLKA 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   I   D+     +++RA       ++ G      +   K           +++   D
Sbjct: 219 DGYFIYDGDEPL---LIERAKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPD 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++ V NAL A  +     I    +++ L    +   R E++ T ++G +I 
Sbjct: 275 KKVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWL-TGNKGEKIL 333

Query: 360 VD-YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            D Y     +   +L    +T   GR IVV G   +       +   +A D
Sbjct: 334 SDVYNSNPTAAREVLTAFSQTDVMGRRIVVLGDMLELGDKSPQMHASLAND 384


>gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 494

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 149/398 (37%), Gaps = 30/398 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R + +G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V                 P +VV NT   L+  A+ +       ++A+
Sbjct: 55  ADAVARGASGLLVDRLLPALH--------VPQVVVANTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G             +   +              ++     
Sbjct: 107 TGSNGKTSVKALLLAILAEAGRVDGI--------TAYANPGNRNNEIGLPLAVIAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +    + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DLAVYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++         RVL  G      I  +++       Q  ++  
Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLATP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +   + PLPG   V NAL A GL +  GI   ++   L +   V GR +   T + G 
Sbjct: 278 QGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR-QIAHTLATGA 336

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D Y     S      +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRE 373


>gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
 gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
          Length = 456

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 103/472 (21%), Positives = 182/472 (38%), Gaps = 51/472 (10%)

Query: 10  DFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           D  E+   LS      Q+    +     DSR I +G +FV + G + DGH FIP A AQG
Sbjct: 4   DLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIGSGDLFVPLKGAR-DGHNFIPTAFAQG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +     +              ++VD+        A     K   ++LAVTG++GK+
Sbjct: 63  AAATLSERPVAE----------GAYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    + Q+   S  +    G                 + I L   + ++       V  
Sbjct: 113 TTKDMLAQLLATSYKTYKTQG--------------NYNNEIGLPYTILHMPENTEKLVLE 158

Query: 188 EASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               H  D H L  + K   G  T +G  H+++  ++      KM++ + L  K+   I+
Sbjct: 159 MGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIV 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD     +++     A C+++  G       +        K  ++      +     P+
Sbjct: 218 PAD-----KIVNEFLPADCKLVRFGPDSD---IFLTRLEERKDSLSFECNFLEQRIDLPV 269

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G++   NA++AA   +  G+  A + +   +L +   R E+    S G  I  D Y   
Sbjct: 270 TGKYNATNAMIAAYAALQEGVSEAAIAQAFSELELTRNRTEW-KKASNGADILSDVYNAN 328

Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             ++ +IL+   TI     GR + V     +     + + G +   L +  IVTD     
Sbjct: 329 PTAMRLILETFSTIPTNPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTDLFLYG 387

Query: 423 EDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           +D E +     EI   G   +  K +     E ++ A+ E L   D +++ G
Sbjct: 388 QDMEALYDYAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLTPADQILLKG 439


>gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
 gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
          Length = 481

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/475 (18%), Positives = 177/475 (37%), Gaps = 38/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEAMEGRPFGNLPAGVTGISIDSRALKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A  A  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAADAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPISMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDA 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
            + T     SE      + + + +P  I+   R    E +   ++ +   DV++V
Sbjct: 406 EVNTLFIGGSE-----MSVLKNALPVEIQTEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 479

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 180/479 (37%), Gaps = 52/479 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +     + +  IN++  DSR I AG +F+ + G + DGH FI
Sbjct: 23  MKLT---LHEIAKIVGSKNDVA-AYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A               + ++   ++VD+  +     A+    K   +++AV
Sbjct: 78  QTAFENGALATFTEKD---------LPADQAHILVDDALEAFQKLAAYYLEKTGVDVIAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G                 + I L     ++   
Sbjct: 129 TGSNGKTTTKDMIHDILATTYRTYKTQG--------------NYNNEIGLPYTALHMPDD 174

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K      T +G  H+++  ++      KM++ +  +P
Sbjct: 175 TEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG-MP 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  ++ +D      ++     +   V+  G   +   L        K  +T S    D
Sbjct: 234 DGSLLLVPSDP-----IVDPFLPSNLEVVRFGDGAE---LTVSELTEFKDHLTFSTNFLD 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    + G  I 
Sbjct: 286 GQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEW-KKAANGADIL 344

Query: 360 VD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +  +    +  ++ L L   AI 
Sbjct: 345 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P             ++ +A ++   E L + D +++ G
Sbjct: 405 TVIF-YGEDIAELSQLASQIFPLGHVYYFKKTADEDQFDAMVKHIKESLGEHDQILLKG 462


>gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
 gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
          Length = 467

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 166/464 (35%), Gaps = 44/464 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI-AQGAEAIVVSSAYSLQDFSAT 85
           E+ +  V +DSR  Q+  +FV +VG + DGH ++ Q +    A A +    +        
Sbjct: 23  EQMVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVSEASAAAFLWQKNHGAPPSENA 82

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           I        V++T + L   A+    +   +++ +TG++GK++    V  +         
Sbjct: 83  IE-------VEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTKDIVNALL-------- 127

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G T  +     +       P+ +   LS      +  + +  S  G  +   +  +  
Sbjct: 128 --GTTFKVHKTEGNYNNHIGLPLTV---LSMPQDTDILILEMGMSGRGEIRLLANIAQPD 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG- 264
               TN+G  H+    ++     AK+ +   L P     I   D+    +V+  +     
Sbjct: 183 VAIITNIGESHLLQLGSRAEIARAKLEITSGLKP-GGLLIYNGDEPLLSQVLAESETVKP 241

Query: 265 --CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              ++ + G                +  + I+ +     F  PL G+  V N L A  + 
Sbjct: 242 EGLKLFTFGLATGNDDYPTEITSDGEGSLFITAQSGKEAFRLPLLGQHNVVNGLAALAVA 301

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381
               +D+  + + L  L +   R E V   +    +   Y  +  S++  ++ +    T 
Sbjct: 302 RHFNVDADHIRKGLSSLKLTGMRIEVVNCPNGLTVLNDAYNASPASMKAAIQTLSAYKTD 361

Query: 382 GRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           GR + V G   +    ++     +G  A       + T           +   I  G  G
Sbjct: 362 GRKVAVLGDMLELGPEEKQFHEEIGIFAAKHDVEVLFT--------YGALGTSIAQGAQG 413

Query: 439 FIEKG------NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
            +         ++ E I+     L+  D+++V A +G     IV
Sbjct: 414 LMPTANVHAYTDKQELIQHLQVYLHANDIVLVKASRGMRLEEIV 457


>gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 484

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/506 (16%), Positives = 168/506 (33%), Gaps = 52/506 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+  +  ++  + +N  +I  +      +N VS DSR++  G +F AI G+  DG  FI
Sbjct: 1   MKMDAISLEEVIQAVNGKAISNVSG--LMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA  +VVS     Q          P+++VD+ +  L   A     K    I+ +
Sbjct: 59  EQAFDAGAIGVVVSK----QGGIDISGKCLPLILVDDVKTALGDLARHYRRKLNAKIIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +                 +   +  +                S  
Sbjct: 115 TGSNGKTTTKEMLYHLLSH-------------FAPVVKPQKSFNNFIGVPLTIFEIESKH 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  ++ G      +          N+ + H++   + +     K  + + L  +
Sbjct: 162 KYGILEMGTNAPGEILRLSEIGLPDIAVILNISKTHLEGLGSIEGVALEKGDILKNL-KE 220

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-- 297
               +  AD+    E+  +        +S G  Q   I         N    TI ++   
Sbjct: 221 NGVFVYNADNPLCCEIADKFGGNK---ISFGLGQNAQIRGTDAKKKGNGSVFTIDIDYNT 277

Query: 298 -----------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                      + F+    +PG   + N L +  +C A+G+D + +        +   R 
Sbjct: 278 FRLCGVKGGGRRQFEIQLQVPGHHNISNCLASFAVCHALGLDISGLYNAFLSFKMPDMRI 337

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +          I   Y     S+   LK    I  +GR I + G   +  +    +  ++
Sbjct: 338 DSQQI-GNVTFINDAYNANPESVFAALKYFEEIDAAGRKIFICGDMLELGKESHALHKEL 396

Query: 406 ALDLA----DIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNK 458
               +    D+               I      G   +   +   +  +     +    +
Sbjct: 397 GEKASTLNLDLLWTVGKYA-----SDIAGAAKDGGMDVEKVLSFRSLDDITEYDMGEFRE 451

Query: 459 QDVLVVAG-KGHETVHIVTNGEKKMS 483
            DV+++ G +G     I+    +  S
Sbjct: 452 NDVILIKGSRGMHMETIIDKYREYFS 477


>gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
 gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
          Length = 457

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 180/479 (37%), Gaps = 52/479 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +     + +  IN++  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEIAKVVGAKNDVT-AYEDVAINQIEFDSRKITEGDLFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A               + ++   ++VD+  +     A+    K   +++AV
Sbjct: 56  QTAFDNGALATFTEKE---------LPADQAHILVDDALEAFQKLAAYYLEKTGVDVIAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G                 + I L     ++   
Sbjct: 107 TGSNGKTTTKDMIHDILATTYRTYKTQG--------------NYNNEIGLPYTALHMPDD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K      T +G  H+++  ++      KM++ +  +P
Sbjct: 153 TEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG-MP 211

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  ++ +D      ++     +   V+  G   +   L        K  +T S    D
Sbjct: 212 DGSLLLVPSDP-----IVDPFLPSNLDVVRFGDGAE---LTVSELTEFKDHLTFSTNFLD 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    + G  I 
Sbjct: 264 GQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILTALANLQLTKNRTEW-KKAANGADIL 322

Query: 360 VD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +  +    +  ++ L L   AI 
Sbjct: 323 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P         I   ++ +A ++   E L + D +++ G
Sbjct: 383 TVIF-YGEDIAELSQLASQMFPLGHVYYFKKIADEDQFDAMVKHIKESLGEHDQILLKG 440


>gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
 gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
          Length = 453

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 157/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F+ QA+A GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 179/501 (35%), Gaps = 67/501 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+++       L+   +                DSR I  G +F+AI G + DGH ++
Sbjct: 4   MSLEEIAQAVQGRLVAGTAAANTPVATSAFT----DSRQIVEGSVFIAIAGERVDGHDYV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
           P   AQGA A +V    +         ++ P +VV++T   L L A     +      P 
Sbjct: 60  PHVGAQGAVAAIVDHEIA--------DADVPQIVVEDTVLALGLLAKHNIERRRALGTPF 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    ++ +    G +   +G  +        +        +L     
Sbjct: 112 TVVGITGSVGKTTTKDLMKALLSHMGSTVAPVGSFNNEIGLPLTSLKVNAETRFLVAE-- 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +    +         +G  H+    + +    AK  +  
Sbjct: 170 -----------MGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIIH 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----- 290
            L+P    +++ A+D +   +   A      V+  G          + A H +       
Sbjct: 219 GLVP-GGLSVLNANDEHVAAMSAFAPG---DVMWFGLPNGDGGNPAITAQHVRCDELDHP 274

Query: 291 -VTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+ + +G+  +    + G+  V NAL AA + + +G+    V   L  +  +      
Sbjct: 275 SFTLKNGDGEHAEVTLGICGQHNVMNALAAASVAMRLGMSIDEVASALSDVTTISPHRMA 334

Query: 349 VGTNSRG---GRIYVD-YAHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKR 399
           V T ++      +  D +    +S++  L  +    +G       I V G   +    ++
Sbjct: 335 VSTVNKQETSFTLIDDSFNANPDSMKAGLDGLLRWKAGSESQPFRIAVLGTMLELGPDEK 394

Query: 400 PIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----------GFIEKGNR 445
            +    G+ AL+    A++T  +      + +   +  G               I++ +R
Sbjct: 395 DLHVGIGRYALEGGVDALLTVGSASDASLDALAGAMADGASLAGDASHVDWVHDIDEADR 454

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
           +   R A+E      V+++ G
Sbjct: 455 LV-TRLAVEH--PGAVVLLKG 472


>gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
 gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
          Length = 464

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 156/405 (38%), Gaps = 24/405 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +    LI   +   +   +  I+ VS+D+R +  G ++VA+ G + DGH F   A A+G
Sbjct: 2   KRTLLSLIAHWAGGEIHGDDVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQARG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V     ++          P ++V ++   L+  A+ +       + A+TG++GK+
Sbjct: 62  ASALLVERLLPIE---------LPQVLVADSELALAKIATGMQRDRETEVFAITGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SV S +  I Q+    + ++           +              +            +
Sbjct: 113 SVKSLLLSILQQVAQHAHKV--------VYANPGNRNNEIGLPLAVIDAPEDADYAVYEM 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A   G   +  D  +       N+   H++   +       K  ++  L P +  A+I 
Sbjct: 165 GAGKPGDIAYLTDIARPRYALVNNIAPAHLERMGSLLGVAVTKGAIYAAL-PADGVAVIN 223

Query: 248 ADDAYSKEVMKR--AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDAY +   +      A CRVL  G +    I  + + A     Q T+     +   + 
Sbjct: 224 VDDAYGRWFEQHFVGTPARCRVLRYGLEHTADITARDIRAGAQGSQFTLVSPMGEARVVL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V NAL AA L +A G+D AL+   L +   VPGR   +    R G + VD ++
Sbjct: 284 GLPGRHNVSNALAAASLALAAGVDLALIAAGLAEAQPVPGRQ--IAHQLRNGAVLVDDSY 341

Query: 365 TSNSLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +N        +          +V G   +       +  +  L 
Sbjct: 342 NANPGSLAAAIDALAAAPEEGWLVLGDMRELGPDAEALHAQAGLR 386


>gi|307262595|ref|ZP_07544225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872018|gb|EFN03732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 244

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/231 (36%), Positives = 119/231 (51%), Gaps = 7/231 (3%)

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           S   + KF+    V       ++       + +    L G F V N L A    + +G D
Sbjct: 15  SFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTALAGLLVLGHD 74

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRII 385
              ++E    L  V GR E V +         + VDYAHT ++LE  L+  R  T G + 
Sbjct: 75  LPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAARLHTEGELY 134

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEK 442
            +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+I++G   +      
Sbjct: 135 CIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGFVQVEKVQVI 194

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 195 HDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 244


>gi|254796629|ref|YP_003081465.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
 gi|254589866|gb|ACT69228.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
          Length = 470

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 107/446 (23%), Positives = 195/446 (43%), Gaps = 24/446 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++SD + +   ++F A    KE  H  I +AI +GA++I+ +     Q +   +  
Sbjct: 16  RIKNITSDPQKVGKDFLFYA-PSEKEHAH--IREAINRGAKSILTN-----QKYEECLEQ 67

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                V    ++      S ++ K P  + A+ GTSG+ SV  F  Q+C  +G  +    
Sbjct: 68  GVDFFVHAQPQQIYHGICSFMWKKQPTFVCAIIGTSGRKSVGHFFSQVCTLAGKKA---- 123

Query: 149 PTSTISSFAQDNRLTTP-------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            T ++S+   D                 +   L  L+ + + +  +  S+  ++   +D 
Sbjct: 124 VTLSVSNEPMDTPKLWQEKDHLISDAADMYNILDDLAERRIEYCCLAISAAAIESRMIDS 183

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + L A +FTNL RD ++  +        K+RL  E+LP+    ++     Y+  +M+   
Sbjct: 184 VNLKAAAFTNLLRDDLEQPEDVDRRLQTKIRLLSEILPENGIMVLPVASEYTTRIMQHCP 243

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N   +V + G     I L         Q +T+ + GK+      + G+FQ  N + A GL
Sbjct: 244 NK--KVCTYGRATSDIQLISQLPTQKGQILTMKILGKEMVVHTNILGKFQGNNLVTAMGL 301

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-T 380
            I+ GID + +    E++  + G  EF+       +I  D A T + L  +L +I+    
Sbjct: 302 AISCGIDPSSIEH--EQISPLAGYMEFLEDYGEERKIMTDCAQTPSELHDLLLSIKWHFP 359

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
              + +V  C  + +      M KIA  + +  I T D+  S   EK R E++   P  I
Sbjct: 360 YNDVTLVLRCSENYEARNTLKMAKIAAKMVNRIIFTSDSHGSMLTEKTRRELMSCCPKAI 419

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E  +R +A+  AI      +++V+ G
Sbjct: 420 EIEDRKKAMEYAINNCKPSEIIVMQG 445


>gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 450

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 164/431 (38%), Gaps = 42/431 (9%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E+   L      +R+   I   S +S+ I    +F+ + GNK DGH FI +AI++GA 
Sbjct: 5   LSEIAETLHTNIENFRDDVLIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEAISRGAI 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSS 128
           + +     + +        + P L V++T K + + A     K  +  ++ +TG+ GK++
Sbjct: 65  SFITQKDVNTE-------KSCPYLKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGKTT 117

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              +V  +         +        +F                 L+      V  + + 
Sbjct: 118 TKEYVFNVLS------NKFRSYKNEGNFNNHIG-------LPYSILNIPDEVKVATLEMG 164

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S+ G         K   G  TN+G  HI+  +T+   F AK  + +  +P +   II  
Sbjct: 165 MSNFGEISFLSKIAKPNIGIITNIGVAHIENLKTRYNIFLAKSEIQDG-MPNDGILIINN 223

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           D+     +    H    +V++VG +       K +  + N     +S    +  +     
Sbjct: 224 DND---ILYSHRHELKRKVVTVGIENDADFRAKDIQKVDNGFFFVVS----NHKYFIESF 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
               +YN+L A  +   +GI+   + + + K   +  RFE +     G  +  D Y  ++
Sbjct: 277 NFHDIYNSLFAIAVGEILGIEKEAIEKGILKKCGLRRRFEVI--KKDGLTVVDDSYNAST 334

Query: 367 NSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           +S+   +  +   +  +I+V   +   G   +Q  R +   I     D+ I T  +    
Sbjct: 335 HSMMSAINGVCGFSGKKILVLGDMLELGEFSEQEHRKVGKYIVSKPIDVIICTGKDAFY- 393

Query: 424 DPEKIRAEIIH 434
               I  E+  
Sbjct: 394 ----IFDEVRK 400


>gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris]
          Length = 494

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 149/398 (37%), Gaps = 30/398 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R + +G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V                 P +VV NT   L+  A+ +       ++A+
Sbjct: 55  ADAVARGASGLLVDRLLPALH--------VPQVVVANTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G             +   +              ++     
Sbjct: 107 TGSNGKTSVKALLLAILAEAGRVDGI--------TAYANPGNRNNEIGLPLAVIAAPDDA 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +    + A   G   +  D  +       N+   H++   +       K  ++  L P 
Sbjct: 159 DLAVYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTAL-PA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++         RVL  G      I  +++       Q  + + 
Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLVIP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +   + PLPG   V NAL A GL +  GI   ++   L +   V GR +   T + G 
Sbjct: 278 QGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR-QIAHTLTTGA 336

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D Y     S      +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRE 373


>gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 456

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/406 (22%), Positives = 152/406 (37%), Gaps = 30/406 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL+  L    +   +   + VS+DSR IQ G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 7   FSELVVPLDARLVAG-DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSV 129
            +V              ++ P LVV +TRK L+   +        + + A+TG+SGK++V
Sbjct: 66  ALVEREVQG--------ASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G          T+ +   +       P+ L   L          + + A
Sbjct: 118 KEMLASILRTRG----------TVLATRGNLNNELGVPLTL---LELTPEHSAAVIELGA 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G     +   K      TN G  H+           AK  + E L      A++  +
Sbjct: 165 SRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGL-NASGTAVLNLE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D       KRA N      ++      +H   +          TI+           L G
Sbjct: 224 DKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQLNLLG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA    A+G+    ++  L  +  V GR   V   S G R+  D Y     
Sbjct: 284 AHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRA-VVQIASNGTRVIDDTYNANPA 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLA 410
           S+   +  +   +   ++V+   G      +QG R +    A  ++
Sbjct: 343 SINAAVDILTGFSGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388


>gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 154/411 (37%), Gaps = 30/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+   I +    +   +     +  + ++N V  D+R +  G +F+ + G   DGH FI
Sbjct: 1   MKMT--IGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGAH-DGHDFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A + +S     D +  +    P LVVD+        +     K    ++AV
Sbjct: 58  ENAIKGGAVATLWAS-----DHTDRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +   T T  +F  +  +           L   S+ 
Sbjct: 113 TGSNGKTTTKDMIASVLS------GEFNVTKTYDNFNNEIGVP-------YTILQMESNT 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G        ++      T +G  HI++  T+    +AKM +    L  
Sbjct: 160 DFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEI-THGLKA 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   I   D+     +++RA       ++ G      +   K           +++   D
Sbjct: 219 DGYFIYDGDEPL---LIERAKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPD 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++ V NAL A  +     I    +++ L    +   R E++ T ++G +I 
Sbjct: 275 KKVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWL-TGNKGEKIL 333

Query: 360 VD-YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            D Y     +   +L    +T   GR IVV G   +       +   +A D
Sbjct: 334 SDVYNSNPTAAREVLTAFSQTDVMGRRIVVLGDMLELGDKSPQMHASLAND 384


>gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
          Length = 510

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 97/501 (19%), Positives = 179/501 (35%), Gaps = 56/501 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + +L      +++   ++  +   +  +   V  DSR I +G +F+A+ G + DGH F  
Sbjct: 1   MIELTLAQIADIVGG-TLHDVPDPQATVTGTVEFDSREIGSGDLFLALPGARVDGHDFAA 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDN--------TRKFLSLFASRLYG 111
            AI +GA A++ +    +      +   ++  ++ +++            L   A+    
Sbjct: 60  TAIEKGAVAVLGARPVGVPAIVVPVSGETDNRVMALESDTDGAGAAVLTALGDLAAYCTK 119

Query: 112 KHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +   ++ VTG++GK+S    +  + +  G +    G  +            T S  
Sbjct: 120 SLAADGLTVVGVTGSAGKTSTKDLIAAVLRPLGETVAPPGSFNNEIGHPWTALRATASTK 179

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           +L              + + A   G             G   N+G  H+    +++A   
Sbjct: 180 FL-------------VLEMSARGEGHIAALAKLAPPRIGVELNVGTAHLGEFGSREAIAR 226

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HN 287
           AK  L E L P +  A++ ADDA    +  R      RV+  G     +    V    H 
Sbjct: 227 AKGELVEAL-PVDGVAVLNADDAAVAAMASRTA---ARVVFYGTAEAQVRATDVVLDAHA 282

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +   T+   G        + GE QV+NAL +A + +  G  +A V E L        R  
Sbjct: 283 RAAFTLHTAGGTAPVALKVHGEHQVHNALASAAVGLECGATTAQVAEALSGAGAASPRRM 342

Query: 348 FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            V T   G  +  D Y    +++   L+++  ++          G DR +    +     
Sbjct: 343 DVFTTDGGVTVVNDTYNANPDAMRAALRSLVLMSEHDEAGERLPGRDRRRTFAVLGEM-- 400

Query: 407 LDLADIAIVTDDNP-RSEDPEKIRAEIIHG------------------IPGFIEKGNRIE 447
            +L + +I+  D   R      I + I  G                      I    R E
Sbjct: 401 GELGEESILEHDRLGRFLVRLDITSTICVGSSRAVHALWQGAVMEGSWGSEAIRVDTRAE 460

Query: 448 AIRTAIEMLNKQDVLVV-AGK 467
           A+      L   D+++V A K
Sbjct: 461 AVERLRAELRPGDLVLVKASK 481


>gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
 gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
          Length = 454

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 97/494 (19%), Positives = 187/494 (37%), Gaps = 65/494 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKLT------LHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A       +            P + VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSEREVA----------GHPYIWVDDCLEAFQALASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         +     T  ++         + I L     ++ 
Sbjct: 104 AVTGSNGKTTTKDMIAAVLST------EYKTYKTQGNY--------NNEIGLPYTALHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + K   G  T +G  H+++  +++     K+++ +  
Sbjct: 150 DDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDG- 208

Query: 238 LPKESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +   I  AD   D Y  E           V+  G  G  I +K +    +K+ +T +
Sbjct: 209 MDSDGILIAPADTIVDPYLPE--------SQMVIRFG-DGAEIFVKDLQ--ESKESLTFT 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    + 
Sbjct: 258 TNVIDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNRTEW-KKAAN 316

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           G  I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++ + L+
Sbjct: 317 GADILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIMSLS 376

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEM-LNKQDVL 462
              + T      ED  ++        P             N+ +A+   I+  L   D +
Sbjct: 377 PETLDTLIF-YGEDIAELAQLASQMFPIGKVYYFKKTADENQFDAMLETIQKVLQPADQI 435

Query: 463 VVAGKGHETVHIVT 476
           ++  KG  ++ +V 
Sbjct: 436 LL--KGSNSMQLVK 447


>gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychromonas ingrahamii 37]
 gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychromonas ingrahamii 37]
          Length = 489

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 166/424 (39%), Gaps = 31/424 (7%)

Query: 5   DLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++I     E+    +  I   +  E   N +S+D+R I++G +F+A+ G + D H F+ +
Sbjct: 13  NMISLTLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEK 72

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVT 121
           A+ QGA A+++             RS+ P ++V +TR  L L AS +  +       A+T
Sbjct: 73  AVQQGAGALLIDQKK---------RSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAIT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    +  I      +       +T  +F  D  L         K    +   G
Sbjct: 124 GSNGKTTTKELLSAIL--CCHTGNNENVLATAGNFNNDIGLPLTLLRLTEKTRYAVVELG 181

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             H+   A +  L        K       N+   H++   + Q    AK  ++  L    
Sbjct: 182 ANHLGEIAYTAQL-------TKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSL-GDT 233

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTIS 294
             A++  D  ++ E + +      +V +   + +  H+     I         +  V ++
Sbjct: 234 GIAVVNLDSDFASEYLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLN 293

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + +       L G   V NAL AA + +A+G +   +   L  +  V GR +    N  
Sbjct: 294 RDPQAISIQLNLAGLHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEGRVDSRELNKL 353

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP--IMGKIALDLADI 412
              I   Y     S+++ +  ++   S  ++V+       D  +    ++G+ A      
Sbjct: 354 VTLIDDTYNANPASVKVAIDLLQQYASSHLLVLGDMAELGDFSEHEHFLIGEYAAQKGIQ 413

Query: 413 AIVT 416
            ++T
Sbjct: 414 TLIT 417


>gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
 gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
          Length = 457

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 94/468 (20%), Positives = 190/468 (40%), Gaps = 40/468 (8%)

Query: 5   DLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L+   F E++  +     +     K N +S+D+R I    IFVA+ G+  + + +I  A
Sbjct: 2   ELLK--FEEIVKAVRGKVHINSGNHKYNNISTDTRKITKDSIFVALKGDNFNANDYIVDA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G+   +V     ++   + +  NT I++V+NTRK L   A     K    ++ +TG+
Sbjct: 60  SVKGSNLCIVD---EIKFKDSDLNENTSIILVENTRKALLDLAELYRSKLDIKVIGITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S                 +     T  +F                  S  +S  V 
Sbjct: 117 TGKTSTKDLTAAALSS------KYKVFKTQGNF-------NNEVGLPLMIFSLDNSYDVA 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+           K      TN+G  HI+  +T++    AKM +  +   ++S 
Sbjct: 164 VLEMGMSNFDEIHRLAKVAKPDIALITNIGISHIENLKTRENILKAKMEI-TDFFNEDSV 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDF 302
            I+  ++    +++K   +   +++S+G++       + +    N  + T+  + +   F
Sbjct: 223 LIVNKEN----DLLKTVKSNDYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKERF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P+PG+  + N+++A      +GI+   + + ++ L V   R + V     G  I  D 
Sbjct: 279 NIPVPGKHNILNSMLAIVAGRTLGIEYDKLKQGIKNLSVTSMRLDIV--KKDGFTIVDDS 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAI-VT 416
           Y  + +S+   +  I TI   R I + G   +  +       ++A     +  D  I V 
Sbjct: 337 YNASPDSMRAAIDVINTIKGNRKIAILGTMKELGKDSYKFHKEVAEYAKENNIDFLITVG 396

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + N   +  E    +I      F    +  + I      LNK+D+++V
Sbjct: 397 EFNEAYK--EGYNNDI--NFMAFDTIEDASDFIT---NNLNKEDIILV 437


>gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus ND03]
          Length = 457

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 182/479 (37%), Gaps = 52/479 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +     +++  +N++  DSR I AG +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEIAKVVGAKNDVT-AYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A               + ++   ++VD+T +     A+    K   +++AV
Sbjct: 56  QTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G                 + I L     ++   
Sbjct: 107 TGSNGKTTTKDMIHDILATTYRTYKTQG--------------NYNNEIGLPYTALHMPDD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K      T +G  H+++  ++      KM++ +  +P
Sbjct: 153 TEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG-MP 211

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  ++  D      ++     +   V+  G   +   L        K  +T S +  D
Sbjct: 212 DGSLLLVPCDP-----IVDPFLPSNLEVVRFGDGAE---LTVSELTEYKDHLTFSTKFLD 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    + G  I 
Sbjct: 264 GQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEW-KKAANGADIL 322

Query: 360 VD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     +++++L+    I     G+ I V     +  +    +  ++ L L   AI 
Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P             ++ +A ++   E L + D +++ G
Sbjct: 383 TVIF-YGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILLKG 440


>gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Asticcacaulis excentricus CB 48]
 gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Asticcacaulis excentricus CB 48]
          Length = 462

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 102/449 (22%), Positives = 174/449 (38%), Gaps = 45/449 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR +Q G IF+A+ G + DGH F+ QA AQGA   +                  
Sbjct: 31  TGITFDSRQVQPGDIFLALSGVR-DGHDFVGQAFAQGAVCALTRKPVD----------GG 79

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L+V +  K L    +    + P    AVTG+ GK+SV   V     R+G +   +   
Sbjct: 80  PCLMVPDVLKALEKLGAYARDRAPAMRGAVTGSVGKTSVTQMVMAALSRAGRAHSAV--- 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKLIAGSF 209
                       +  + I +   L+ + +     V     +H        + ++  A   
Sbjct: 137 -----------KSFNNHIGVPLTLARMPADTERAVFEIGMNHANEITPLSELVEPDAVII 185

Query: 210 TNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           T +G  H +     ++    AK  +F+ L      AI+ AD+ +  E+ +RA   G +V 
Sbjct: 186 TTVGAVHTENFPDGEEGVMKAKAEIFDGL-KYGGLAILNADNHWFAELNERASEMGAKVQ 244

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G  +G    L     +  + QV  ++ G+D  F     G+ Q  NAL    +C A+ +
Sbjct: 245 CFGEAEGADACLISHEVVDGRAQVCATLHGRDIAFTLAHTGKHQALNALSVLLMCEALKV 304

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI-----LKNIRTITS 381
           D+A  L  L     + GR         GG +  +D ++ +N + M+     L   R +T 
Sbjct: 305 DTATTLAALSAFEALDGRGAEHQIAVAGGHVTLIDESYNANPISMVATLNALAARRLVTG 364

Query: 382 GRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           GR I V       G D  +    +   +     D   V    P       +  E + G  
Sbjct: 365 GRRIAVMTDMLELGPDELKRHAALAPALTAAGVDQVFVAG--PLMRALWDVLPEALRGAY 422

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +E ++TA+      D++++ G
Sbjct: 423 AAT-AAELLEPLKTAL---RPNDIVMIKG 447


>gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile 630]
 gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Clostridium
           difficile]
          Length = 457

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 166/451 (36%), Gaps = 27/451 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++++  DSR   A   FVAIVG   DGH F+  A   G +  +     +  +      S+
Sbjct: 26  VSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGCKTFI----KNESNGIKLESSD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T   L   +     K     + VTG+ GK++    +             I  
Sbjct: 82  INLIDVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDMIYSA----------ISA 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              I    ++       P+ L    +         + +  S     ++ +D +       
Sbjct: 132 KLNILKNEKNLNNHFGVPLTL---FNLNKEHECAVIEMGMSGFNEIKYLVDIVNPKIAVI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +N+G  H++   +Q+    AKM +      + +  I+  DD +   + ++ H    +   
Sbjct: 189 SNIGLSHVEKLGSQEGILKAKMEITSNF-DETNTLIVNGDDKFLSTLKEKEHVYKLKTFG 247

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +   ++ +      +       + GK  +   P  GE  +YNA+ A  + + + I  
Sbjct: 248 FN-KNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGLCLNISL 306

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV--- 386
             + + L+       R + +  N +   I   Y  + +S++  LK +      R+ +   
Sbjct: 307 DYIKKGLKNFKGTKMRLDIIK-NEKLTIINDSYNASPDSMDAALKILGRYKGRRVAILGD 365

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           +   G   + G R ++GK +++  DI I   +N       +   ++           NR 
Sbjct: 366 ILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVF--IGEEAKQLGFNSANIYHFENRE 422

Query: 447 EAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
           +      E++   D ++V G +G     IV 
Sbjct: 423 DVFNKLNELVKTGDTILVKGSRGMRLEKIVE 453


>gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 465

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 165/474 (34%), Gaps = 37/474 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+ +KD  +L   L        +  I  +S+DSR I+ G  FV +VGNK D H ++  A 
Sbjct: 2   DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAF 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             G +A VVS     + ++  +    P  VV +T       A          ++AVTG+ 
Sbjct: 62  DLGIQAAVVS-----EKYNGLVPIGLPHWVVPDTLYAYQQIALLHRRNLNLPVVAVTGSV 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ I    G      G          +       P  L   LS   +     
Sbjct: 117 GKTTTRELIRAILSPLGEIVSSRG----------NENNDIGVPKTL---LSGSETDAAFV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G         +      TN+G+ HI    +++    AK  +   L P     
Sbjct: 164 LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVI 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-------GKFIHLKKVCAIHNK----QQVTI 293
           I + D    K ++++      RV   G+         +    + +   +      Q   I
Sbjct: 224 IPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFAFQDIEPDYISQIDMQNNFI 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             EG+ F    PL G     N L+A  +   +G+        L++L +          + 
Sbjct: 284 LFEGRKF--KLPLEGRHNAMNFLLALTVATELGLSIKK----LDQLKINMPIGRNRLVDC 337

Query: 354 RGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               +    Y  +  S+   L+ + +   GR   V G   +       +  K+     ++
Sbjct: 338 GQYLVLDETYNASPESVIASLELLVS-KPGRHFAVLGTMLELGSESILLHQKVLKKAIEL 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +         +   I  + I  +P      N  +A  + +  L+  D +++ G
Sbjct: 397 GLTGIVFVSCGEESNIIKKTIKELPNHDVVSNPKDAAMSLLPWLSPGDNILIKG 450


>gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Shewanella amazonensis SB2B]
 gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella amazonensis SB2B]
          Length = 455

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 177/470 (37%), Gaps = 46/470 (9%)

Query: 11  FPELINQLSIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            P  + QL+          +  ++ + SDSR +  G +FVA+ G + DGH F   A A G
Sbjct: 2   IPLSLTQLAAATHGRLCGEDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V     L           P LVV +T+K +    + +        +A+TG++GK+
Sbjct: 62  ASALLVERELPLA---------LPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SV   V  +  +     F  G          +       P+ L + L      GV    +
Sbjct: 113 SVKEMVATVLSQHHSVLFTAG----------NFNNEIGVPLTLLR-LEQGHEYGV--FEL 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A+  G   +    ++       N+G  H++   ++     AK  ++  L  ++   I+ 
Sbjct: 160 GANHKGEIDYTSSLVRPSVSLVNNVGSAHLEGFGSEAGVAEAKSEIYLHL-AQDGVGIVN 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD Y++ ++ +          +G   +    +       +    +   G       PL 
Sbjct: 219 LDDRYAETMLNKLKGKRVLTFGLGAGAEITAREVTADAFGRYSFYLCHGGDHVTVSLPLA 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+ QV NAL  A +CIA+G+    +   L KL  V GR        R   +   Y    N
Sbjct: 279 GKHQVSNALATAAICIALGLPLQEIAAGLAKLAPVKGRMMPRQL-GRLLLVDDSYNANPN 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPR--- 421
           S+   +  ++ I++ R +V+   G   D        +  K      D         R   
Sbjct: 338 SVGAAIDWLKEISTNRTLVLGDLGELGDNAALLHFELGQKAKEAGLDSLFCLGSLSRHAS 397

Query: 422 -------SEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNK 458
                   E+ + + +E+I+ I G       + KG+R  A+   +E L  
Sbjct: 398 QAFGSKHFEELDALVSELINYINGVEGDVTLLVKGSRSAAMERVVEALTA 447


>gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 456

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/471 (21%), Positives = 162/471 (34%), Gaps = 47/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F EL+  L    +   +     VS+DSR I+ G +FVA+ G + DGH ++ Q  A
Sbjct: 2   LKPMTFSELVVPLDSRLVGG-DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA   +V              +  P LVV +TRK L+   +          + AVTG+S
Sbjct: 61  KGAVGALVEREVQG--------AALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSS 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I +  G      G  +                      L          
Sbjct: 113 GKTTVKEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + AS  G   + +   K      TN G  H+           AK  + E L      A
Sbjct: 160 IELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGL-DAGGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++  +D       KRA N      ++      ++  ++          T++         
Sbjct: 219 VLNLEDKAFPIWRKRAGNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             L G   V NAL AA    A+G+    ++  L  +  V GR       S G R+  D Y
Sbjct: 279 LNLLGTHNVSNALAAAAASCAMGVPLEGIVTGLNNVQPVKGRA-VAQIASNGTRVIDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDN 419
                S+   +  +   T   ++V+   G   D   QG R +    A  ++ +  V    
Sbjct: 338 NANPASINAAVDILTGFTGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAVGP-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                       + H +  F E      ++ E I       +    L++ G
Sbjct: 396 -----------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPDTTLLIKG 435


>gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           luteolum DSM 273]
 gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium luteolum DSM 273]
          Length = 476

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/417 (21%), Positives = 159/417 (38%), Gaps = 26/417 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE--VSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQ 62
           L ++DF +   +L + P     R++ +   + DSR I   G IF+A+ G   DGH F+  
Sbjct: 5   LTWEDFRK-CGELVLNPEAHPRREVQDPVAAIDSRAIDGPG-IFIALRGESTDGHRFVQD 62

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +GA+  +VS  +   +           +VV +T K L   AS      P  ++ + G
Sbjct: 63  VFRRGADFAMVSREWHSLEKDPVPPPGKAYIVVQDTEKGLQELASIYRDTFPIPVVGIGG 122

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++       + +         G    +S    +N L  P        L       +
Sbjct: 123 SNGKTTTKEMTAAVLRT--------GFKVHVSRGNFNNHLGVPIT-----LLGMRRDTEI 169

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +  +  G  +      +   G  TN+G +H+++    +    A+ +LF+ L     
Sbjct: 170 AVVEMGINHPGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEGVRLAERKLFDWLDRCRG 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
              + ADD+    +   A ++   VL  +   +G+    + V   H  +   T++     
Sbjct: 230 TIFVNADDS---RLADAATDSERHVLYGTGSPEGRICSAESVSVGHGGRVSFTLTAGAVR 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                   G   V NA+ AA + +  G+ +A V   LE L    G      +   G  I 
Sbjct: 287 EQVFLQFTGRHNVQNAVAAAAVGLHFGLSTAQVKAGLEGLLPESGWKRLELSEEGGVTII 346

Query: 360 VD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            D Y    +S+ + L  +  +  SGR I V G   +           I   LA + I
Sbjct: 347 NDTYNANPDSMRLALDTLADMPCSGRRIAVIGDMLELGATAEDEHRSIGRYLAGLPI 403


>gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
 gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
          Length = 474

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 164/473 (34%), Gaps = 42/473 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+ + +    +      ++   V  DSR + +G +FVA  G K DGH +    
Sbjct: 1   MIALSLAEIASAVDGRLVAADPTAQVTGSVEFDSRKVTSGGLFVAFDGEKVDGHDYAAA- 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
                       A +            P++VV +    ++  A  +  + P+  ++ +TG
Sbjct: 60  ---------AVQAGAAAVLGTREVPGVPMVVVADALTAMARLARAVVDRLPQLTVIGLTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++    + Q+  R G +    G  +             PS  YL            
Sbjct: 111 SSGKTTTKDLIAQLTARLGETVAPPGSFNNELGHPYTALQAVPSTRYL------------ 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +   A   G  ++  +          N+G  HI    +Q+    AK  L E L P + 
Sbjct: 159 -VLEKGARGIGHVRYLCEVAPPRISVVLNVGVSHIGEFGSQENIALAKGELVEAL-PADG 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +  R      R            +        +   T+         
Sbjct: 217 LAVLNADDPLVDAMAGRTTARVVR-YGEAAHADVRAVDVTLDERGRPAYTLVTPEGSATV 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
              L G  QV+N L AA +   +G+    +   L +L +V  R   V   + G  +  D 
Sbjct: 276 RLALTGRHQVWNTLAAAAVARELGMPLVEIAVALGELGLVSTRRMDVFERTDGVTVIDDS 335

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y     S+ + L+ +  + +GR    V G   +  + +     ++    A++ +      
Sbjct: 336 YNANPASMSVALRALAGVGAGRRTFAVLGYMAELGEFEAQGHTEVGRLAAELGV-----D 390

Query: 421 RSEDPEKIRAEIIHGIPGF-------IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           R     +  A I HG           +   ++  A++     L   DV++V G
Sbjct: 391 RLLVVGEAAAPIHHGATSVGDWGGESVLLTDQAAAVQVLRSELRPGDVVLVKG 443


>gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
 gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
          Length = 457

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 182/479 (37%), Gaps = 52/479 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +     +++  +N++  DSR I AG +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEIAKVVGAKNDVT-AYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A               + ++   ++VD+T +     A+    K   +++AV
Sbjct: 56  QTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G                 + I L     ++   
Sbjct: 107 TGSNGKTTTKDMIHDILATTYRTYKTQG--------------NYNNEIGLPYTALHMPDD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K      T +G  H+++  ++      KM++ +  +P
Sbjct: 153 TEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG-MP 211

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  ++  D      ++     +   V+  G   +   L        K  +T S +  D
Sbjct: 212 DGSLLLVPCDP-----IVDPFLPSNLEVVRFGDGAE---LTVSELTEYKDHLTFSTKFLD 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    + G  I 
Sbjct: 264 GQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEW-KKAANGADIL 322

Query: 360 VD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     +++++L+    I     G+ I V     +  +    +  ++ L L   AI 
Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P             ++ +A ++   E L + D +++ G
Sbjct: 383 TVIF-YGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQILLKG 440


>gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 456

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/471 (20%), Positives = 161/471 (34%), Gaps = 47/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F EL+  L    +   +     VS+DSR I+ G +FVA+ G + DGH ++ Q  A
Sbjct: 2   LKPMTFSELVVPLDARLVGG-DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA   +V              +  P LVV +TRK L+   +          + AVTG+S
Sbjct: 61  KGAVGALVEREVQG--------AALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSS 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I +  G      G  +                      L          
Sbjct: 113 GKTTVKEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + AS  G   + +   K      TN G  H+           AK  + E L      A
Sbjct: 160 IELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGL-DAGGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++  +D       KRA N      ++      ++  ++          T++         
Sbjct: 219 VLNLEDKAFPIWRKRAGNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             L G   V NAL  A    A+G+    ++  L  +  V GR       S G R+  D Y
Sbjct: 279 LNLLGTHNVSNALAVAAASCAMGVPLEGIVTGLNNVQPVKGRA-VAQIASNGTRVIDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDN 419
                S+   +  +   T   ++V+   G   D   QG R +    A  ++ +  V    
Sbjct: 338 NANPASINAAVDILTGFTGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAVGP-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                       + H +  F E      ++ E I       +    L++ G
Sbjct: 396 -----------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPDTTLLIKG 435


>gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-66c26]
 gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-76w55]
 gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-97b34]
 gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-37x79]
 gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
 gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile QCD-32g58]
 gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
          Length = 457

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 166/451 (36%), Gaps = 27/451 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++++  DSR   A   FVAIVG   DGH F+  A   G +  +     +  +      S+
Sbjct: 26  VSDIVIDSREASAQNAFVAIVGENLDGHTFMKPAYDSGCKTFI----KNESNGIKLESSD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T   L   +     K     + VTG+ GK++    +             I  
Sbjct: 82  INLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDMIYSA----------ISA 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              I    ++       P+ L    +         + +  S     ++ +D +       
Sbjct: 132 KLNILKNEKNLNNHFGVPLTL---FNLNKEHECAVIEMGMSGFNEIKYLVDIVNPKIAVI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +N+G  H++   +Q+    AKM +      + +  I+  DD +   + ++ H    +   
Sbjct: 189 SNIGLSHVEKLGSQEGILKAKMEITSNF-DETNTLIVNGDDKFLSTLKEKEHVYKLKTFG 247

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +   I+ +      +       + GK  +   P  GE  +YNA+ A  + + + I  
Sbjct: 248 FN-KNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGLCLNISL 306

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV--- 386
             + + L+       R + +  N +   I   Y  + +S++  LK +      R+ +   
Sbjct: 307 DYIKKGLKNFKGTKMRLDIIK-NEKLTIINDSYNASPDSMDAALKILGRYKGRRVAILGD 365

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           +   G   + G R ++GK +++  DI I   +N       +   ++           NR 
Sbjct: 366 ILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVF--IGEEAKQLGFNSANIYHFENRE 422

Query: 447 EAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
           +      E++   D ++V G +G     IV 
Sbjct: 423 DVFNKLNELVKTGDTILVKGSRGMRLEKIVE 453


>gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
 gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
          Length = 462

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 152/413 (36%), Gaps = 26/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  DF  L N L+    Q   RK+  +++D+R +  G +F+A+ G   DGH FI QA  
Sbjct: 1   MIPMDFDWLANVLA-TDYQGDNRKVININTDTRTLCDGEVFLALKGPNFDGHKFIEQAKQ 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  ++V  A         + ++    VV +TR  L    + +  +     +A+TG+ G
Sbjct: 60  KGAIGVIVDHA---------VDTDIAQFVVADTRIALGTIGTAVMAQVAPKTIAITGSVG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I    G         +T  +F  D  +           L          +
Sbjct: 111 KTTVKEMCAAILSSKGD------VLATKGNFNNDIGVPL-------TLLRLEPQHRFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     K       N+   H++   + Q    AK  +++ L  ++  AI
Sbjct: 158 ELGANHIGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLQGVAQAKGEIYDGL-KEDGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D  +S+  + +      +  S   +              +   T+  +         
Sbjct: 217 VNCDSDFSQYWLDKLATRNIKCFSSSEKLDIWAEDISLDAQARASFTLCTKQHSVPVKLA 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG+  + NAL+AA L     +    +   L  +  V GR   +  +     I   Y   
Sbjct: 277 LPGKHNISNALIAAALTSEFDVSLEDIASALATMGEVKGRVNLIEASDSLTIIDDTYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVT 416
             S++  +  +  I   RI+ +   G   +        +G+ AL      + T
Sbjct: 337 VKSVKAAIDLLSDIQGHRILALGDMGELGEDARKYHQEVGEYALAQGIDELFT 389


>gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium cellulovorans 743B]
          Length = 395

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/397 (21%), Positives = 161/397 (40%), Gaps = 28/397 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +   N VS D+R ++ G I++AI G   DG+ F+ +AI +GAE  ++     +   
Sbjct: 19  INGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGAELCIIDK---IAYT 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            A + + + I++V+NT+K L   A     K    ++ VTG++GK+S    +         
Sbjct: 76  EAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKDLIAAALSE--- 132

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              ++    T  +F                  +  ++  V  + +  S     Q   D  
Sbjct: 133 ---KLKVFKTKGNF-------NNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVA 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G  TN+G  HI+  +T++    AKM +      KE+  I+  DD Y   + K  + 
Sbjct: 183 RPDLGVITNIGISHIENLKTRENILKAKMEITTYF-GKENLLIVNHDDQYLSTIDKAEYR 241

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +S     K I LK    +  +      +    F    P+PG+  + NAL+A    
Sbjct: 242 LIKASIS---DDKNIDLKGESLVLKEDSCEFKLNESKFY--IPMPGKHNISNALLAIACA 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
             +G++  L+ +    +     R +     ++G  I  D Y  + +S++  ++ ++ +  
Sbjct: 297 RELGVEDQLINKGFLNIEATSMRLDI--EKNKGITIINDTYNASPDSMKAAIEVMKNLKG 354

Query: 382 GRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIV 415
            R I V G      +        MG  A + +   ++
Sbjct: 355 KRRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILI 391


>gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
 gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
          Length = 487

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 162/471 (34%), Gaps = 40/471 (8%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P  +   +   +    R +   S D+R ++ G +F AI G   DGH F+  A+ +GA A 
Sbjct: 9   PAALEAATGGRLIGAPRAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALDKGAGAA 68

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV+   + +          P    D     +         +    I+AVTG+ GK+    
Sbjct: 69  VVAEVRAKEFEGVGPVLAVPGEGDDPVLDAMRRLGLAARARTGAAIIAVTGSVGKTGTKE 128

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++ +    G +   +               +  +   +   L+ +       V     +
Sbjct: 129 ALRHVLSAQGATHASV--------------ASYNNHWGVPLTLTRMPEDTRFGVFEIGMN 174

Query: 192 HG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           HG         ++      T +   HI++ ++  A  +AK  +F  L P    A+I  D+
Sbjct: 175 HGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKP-GGVAVINRDN 233

Query: 251 AYSKEVMKRAHNAGC-RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + ++  A  +   RV++ G ++   +   ++    +   V  +V G    +    PG
Sbjct: 234 PNYERLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHT 365
                N+L       A+G D A     L  L    GR E        G    VD  Y   
Sbjct: 294 RHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNAN 353

Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDD 418
             S+   L  +  I     GR I V G   +     +   R +   +A +  D+      
Sbjct: 354 PASIRAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVF---- 409

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAI-EMLNKQDVLVVAG 466
                    + A +   +P  +        E +  A+   L   D ++V G
Sbjct: 410 -----AVGPLMAHLFEALPMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKG 455


>gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
 gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
          Length = 457

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 182/479 (37%), Gaps = 52/479 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +     +++  +N++  DSR I AG +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEIAKVVGAKNDVT-AYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A               + ++   ++VD+T +     A+    K   +++AV
Sbjct: 56  QTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G                 + I L     ++   
Sbjct: 107 TGSNGKTTTKDMIHDILATTYRTYKTQG--------------NYNNEIGLPYTALHMPDD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K      T +G  H+++  ++      KM++ +  +P
Sbjct: 153 TEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG-MP 211

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  ++  D      ++     +   V+  G   +   L        K  +T S +  D
Sbjct: 212 DGSLLLVPCDP-----IVDLFLPSNLEVVRFGDGAE---LTVSELTEYKDHLTFSTKFLD 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    + G  I 
Sbjct: 264 GQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEW-KKAANGADIL 322

Query: 360 VD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     +++++L+    I     G+ I V     +  +    +  ++ L L   AI 
Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P             ++ +A ++   E L + D +++ G
Sbjct: 383 TVIF-YGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQILLKG 440


>gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 469

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 138/369 (37%), Gaps = 28/369 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q    +I  + +DSR  +AG  F+A+ G + D H FI Q   QG +  +VS     +   
Sbjct: 31  QAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQGCQVAIVSQPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++P+  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------VCQLVVPDTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTTKEMLGSILSRIAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                      L          + + AS  G   +  + +
Sbjct: 142 TLVTRGNLNNDLGVPVM-------------LLELHPEHQYAVMELGASHQGEIDYTSNLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           + +     N+G  H+     +     AK  ++  + P    +I+ A D ++  + +    
Sbjct: 189 QPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAP-NGTSIVPAADDFADSIRQAVQT 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +VLS G  G+ I   ++          ++          P  GE  V NA  AA   
Sbjct: 248 E--QVLSFGAGGE-IFATEIELQAQSATFKLNTPQGVRQVNLPFAGEHNVQNATAAAAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +AIGI    ++  LE+     GR  F+    R   I   Y     S+    + +      
Sbjct: 305 LAIGISLDDIVLGLEQAVGAKGRLNFIQ-QGRHLLIDDTYNANPTSMRAAAEVLAQQEGV 363

Query: 383 RIIVVFGCG 391
           R++V+   G
Sbjct: 364 RVMVMGDIG 372


>gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
 gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
          Length = 468

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 138/363 (38%), Gaps = 29/363 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E+ I  + +DSR  +AG  F+A+ G + D H F+ Q + +G +  +V     L      
Sbjct: 33  PEQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNKGCQVAIVERPLDL------ 86

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   LVV +TR+ L    +    ++P+  ++A+TG+SGK++    +  I  R   + 
Sbjct: 87  ---DMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTL 143

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +                      L   +      + + AS  G   +    ++ 
Sbjct: 144 VTRGNLNNDLGVPMM-------------LLELTAEHQYAVMELGASHQGEIDYTSQLVQP 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+G  H+     ++    AK  ++   + K+  ++I A D ++  +        
Sbjct: 191 QVAGIINVGTAHLGEFGGREGICRAKSEIYAH-IAKDGTSVIPAADDFTDAIRHAVQT-- 247

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +VLS G +G  I+  ++  +    Q  +       +   P  G   V NA  A    +A
Sbjct: 248 TQVLSFG-EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGI    ++  LE      GR  F+        I   Y     S+    + +    SG  
Sbjct: 307 IGISLDDIVIGLELAQGAKGRLNFISHKQHLF-IDDTYNANPTSMRAAGE-VLAQQSGIK 364

Query: 385 IVV 387
           ++V
Sbjct: 365 VMV 367


>gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 463

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 167/453 (36%), Gaps = 45/453 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  V+ DSR IQ G +F A+ G + DGH ++  A  +GA   VV S           
Sbjct: 21  DFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVEAAFKRGAAGAVVMSPVPY------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P ++VD++ + L   A     ++   I+ +TG+ GK+S    ++   +R       
Sbjct: 74  ----PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALERMAPEKVH 129

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLI 205
                        +  +  + + +  +L+ +  + +  +     +H  +       ++  
Sbjct: 130 Y------------SLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDLTKLVQPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H  +   + A   AK  +FE L      AII  D  Y   +  +A     
Sbjct: 178 VALITAIAPAHAAFFADETAIAEAKSEIFEGL-SSGGIAIIPHDSPYRDLLTAKAQEKKA 236

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            + S G+ +G  I  + +    + +  VT S+  +   F   +  E  + NA+    +  
Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAMAVLAVVD 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHTSNSLEMILKNIRTIT 380
           A+G D  L    L  +    GR +        G  I +D  Y     S+   +K +    
Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIKALENEP 356

Query: 381 SGRIIVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             +  +V        G +     R +   ++    D  ++               E + G
Sbjct: 357 KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVG------QEMAALEESLAG 410

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 IEK ++ EA+    E+L   D+L+V G
Sbjct: 411 KIACDRIEKADQAEALLD--EILKADDILLVKG 441


>gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 458

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 174/471 (36%), Gaps = 42/471 (8%)

Query: 11  FPELINQLSIFPMQWRE---RKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             EL+ +     +   +     I E+ +DSR  +  G +FV ++G K DGH +I    A 
Sbjct: 5   IQELVQETGGICLNSEDSGNTVIEEIFTDSRQKVNKG-LFVPLIGEKFDGHDYIDDVKAM 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A + S          ++  +   + V++T+K L   A     K    I+A+TG+ GK
Sbjct: 64  GALATLTSKKND------SVHQDLITIAVEDTQKALLDVARYYSSKVDRPIIAITGSVGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    V  + + +      +    T+ ++  +  +            +      V+ + 
Sbjct: 118 TTTKEMVAAVLETT------LKVHKTVGNYNNEIGVP-------KTMFALSEDDQVSVIE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  +  G        +K      TN+G  HI++ ++++    AK+ + E L P E   II
Sbjct: 165 MGMNHFGELSRLTSVVKPDFAVITNIGTAHIEHLESREGILKAKLEILEGLKP-EGTVII 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             D+     +M +  +     ++ G+  +    +  V       +  +      F    P
Sbjct: 224 NGDEPL---LMGKKQDNW---ITFGFDPRLDYCVSNVVTYGVFTEAVVYTPNSVFKIKIP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
            PG     NAL+A  +   + I    +++ +        R     TN     +  D Y  
Sbjct: 278 SPGVHMALNALIAIIIAEKLEIPRDKIIKGIANYKSEKMRMNI--TNVGNFTVIDDTYNA 335

Query: 365 TSNSLEMILKNIRTI-TSGRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +S+   +K +    T  R I     +F  G   +   R +   IA    +      D 
Sbjct: 336 NYDSMVAAMKVLGNYLTKNRKIAILGDIFELGKYSESIHRNLGEYIASSRINCVFTIGDA 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
                   I +     +     K N+   I+   + +N  D+++V A +G 
Sbjct: 396 AAYITDAIINSPNNKNVTSKHFK-NKELFIKEWSQYINAGDIVLVKASRGM 445


>gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
 gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
          Length = 449

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 168/441 (38%), Gaps = 33/441 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH +   AI +GA A++VS    + D         
Sbjct: 23  NEVQLNSKDVKKGDLFIALKGNR-DGHDYALDAIDKGAAAVIVSKQVEITDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            IL+VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -ILLVDDCFEALKKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDSLVFAGRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G  +  +  +K      T
Sbjct: 135 NNYLGLLINLASMADDMEYAILEL-------------GMNHKGEIRELVQILKPNIAVIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269
           N+   H+++  + +    AK  +FE    K   A+I AD     +++    N    RV +
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFENF-SKNDIAVINADTNCYSKILSILKNLYIDRVYN 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G      H + V   H   QV +   +  K  +   P        N  V   +   +G 
Sbjct: 241 FGILH-NTHAQLVLYEHLGAQVRLKYKINNKSLEITIPFIPRHFAKNYTVVLLIIDILGK 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  +   HL  ++   GR + +  N +  R+  D Y  +  S++  L+ ++ + +     
Sbjct: 300 DIEIAANHLANIYPTKGRGDII--NIQNARVICDYYNASPKSMQAALEYLKQVMAENKTA 357

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNR 445
           + G   +  +  + +  ++   + D+   +       + + I   +   I   + +  + 
Sbjct: 358 IIGDMLELGKNSKLLHEELVPYILDVGC-SKIYLVGVNTKYIYDLLPSKIAKKYFKNVD- 415

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            E I    ++    D++++ G
Sbjct: 416 -ELITHITDLFKGNDLILIKG 435


>gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 456

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 169/471 (35%), Gaps = 47/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +    F EL+  L    +   +   + VS+DSR IQ G +FVA+ G + DGH ++ Q  A
Sbjct: 2   IKSMTFSELVVPLDARLVAG-DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA   +V              ++ P LVV +TRK L+   +        + + A+TG+S
Sbjct: 61  KGAVGALVEREVQG--------ASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSS 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I +  G          T+ +   +       P+ L   L          
Sbjct: 113 GKTTVKEMLASILRTRG----------TVLATRGNLNNELGVPLTL---LELAPEHSAAV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + AS  G     +   K      TN G  H+           AK  + E L      A
Sbjct: 160 IELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGL-NASGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++  +D       KRA N      ++      +H   +          TI+         
Sbjct: 219 VLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             L G   V NAL AA    A+G+    ++  L  +  V GR   V   S G R+  D Y
Sbjct: 279 LNLLGALNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRA-VVQIASNGTRVIDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDN 419
                S+   +  +   T   ++V+   G      +QG R +    A  ++ +  V    
Sbjct: 338 NANPASINAAVDILTGFTGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAVGP-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                       + H +  F E      ++ E I       +    L++ G
Sbjct: 396 -----------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|292558100|gb|ADE31101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus suis GZ1]
          Length = 398

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 92/394 (23%), Positives = 163/394 (41%), Gaps = 32/394 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q +     W + + + +S DSR +    +F A  G       F+ +AI  G +  V  
Sbjct: 20  IKQNNQTASTWTDVQFDALSYDSRTVSPTTLFFA-KGLAFK-KEFLEKAIEAGLDFYVSE 77

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
             Y +           P ++V + ++ +SL A   +G   +   +LA TGT GK++ A F
Sbjct: 78  IDYEV---------GIPAIIVHDIKQAMSLIAMDFHGHPQKQLKLLAFTGTKGKTTAAYF 128

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
              I ++S   +      +T+       + LTTP  + L   ++     G+TH+ +E SS
Sbjct: 129 AFNILKQSKKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKNGMTHLIMEVSS 188

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 R+ G+    G F N+  DHI    H T + YF  K  L +         I+ A 
Sbjct: 189 QAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMDN----SRAVIVNAG 244

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPG 308
             + + V ++  +             F        I        +  GK    +   L G
Sbjct: 245 MDHFEVVKEQVSSK---------DHDFYGPTSENQISQSAGFDFTATGKLAGHYDIQLIG 295

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F   NA+ A   C+ +G     +   + +   VPGR E V T   G +++VDYAH  +S
Sbjct: 296 GFNQENAIAAGLACLRLGASLEDIHTGIAQ-TNVPGRME-VLTQQNGAKVFVDYAHNGDS 353

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           ++ ++  +    +G++ ++ G  G++ + +R   
Sbjct: 354 VKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDF 387


>gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
 gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
          Length = 452

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 100/466 (21%), Positives = 182/466 (39%), Gaps = 35/466 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L    +   +R I  VS+D+R I AG +FVA+VG + D H F  QA+ 
Sbjct: 1   MITMMLSQIADALDA-ELVGNDRAIESVSTDTRAIDAGALFVALVGERFDAHDFAAQAVE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS           + S+ P L+V +T+  L    + ++       +A+TG++G
Sbjct: 60  SGAGALLVSR---------IVESDVPQLLVKDTKLALGQLGALVHQSCQTPTVAITGSAG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I ++ G   F      T  +F  D  +           L          +
Sbjct: 111 KTTVKEMVASIMEQKGRVLF------TAGNFNNDIGVP-------LTLLRSTPEDDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  + +K       N+   H++   +      AK  +++ L P  S AI
Sbjct: 158 EMGANHIGEIAYTTNLVKADVALVNNVAAAHLEGFGSLDGVKQAKGEIYQGLKP-GSVAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           I  D    +       +   +  SV         K +    + + + T+     D     
Sbjct: 217 INLDSNGGEYWHSVLADKLVKRFSVMDSDADFFAKDISLNSSGEAEFTLVSPVGDVAIKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  V NAL A  L + +G +  +V   L +L  V GR E +  N     I   Y  
Sbjct: 277 GIVGQHNVANALAATALALELGANLEMVQSGLAQLSKVKGRVEVIELNDTIKLIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA---IVTDDNPR 421
           +  +++     + + T G   ++ G   +       +  ++    A      ++T     
Sbjct: 337 SVPAMKAAADLLASFT-GIRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLT----Y 391

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             D + I  E   GI  F    + I+ I+  +    +Q  L+V G 
Sbjct: 392 GADAKAISDE-CGGI-HFSSHQSMIDYIKQHLAQHQEQQTLLVKGA 435


>gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 443

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 142/397 (35%), Gaps = 36/397 (9%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           LS       + K+  V+ +SR ++ G +FVA+V +  DGH ++  A+ +GA A++V   +
Sbjct: 12  LSAVTQGNDQIKVTGVAFNSRDVKIGDLFVALVAD-SDGHRYLQDALDRGAAAVLVDDNH 70

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +       I    P ++V +T   L   AS    +    ++A+TG++GK++       I 
Sbjct: 71  A-------ISEKLPAIIVKDTLTALQQLASYYRQQINPKVIAITGSNGKTTTKDMTAAI- 122

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                        ST+    +               LS      V  V +     G    
Sbjct: 123 ------------VSTVFKTFKTPNNFNNEIGVPMTLLSMPEDTEVLVVELGMDRSGQLTM 170

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++      T +G  HI++ +T+     AK+ +    L  +    I  D+    + +
Sbjct: 171 LSQLVQPDIAIITMIGEAHIEFFKTRANIAKAKLEI-TNGLKADGVLFIPFDEPLLTQAV 229

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                   RV+  G     +           +    ++          L G + + NAL 
Sbjct: 230 -----IMQRVVWFGQNIDAVETASDHTNFIYKNTRFAIP---------LIGGYNIMNALA 275

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    I + ID    ++ L+   +   R E + T      I   Y     ++  +L  ++
Sbjct: 276 AISAGILLHIDLKKAVQALQTFDLTKNRTERLVTARGVILISDVYNSNPTAVAAVLATLK 335

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            I +    VV G   +  +    +   +   + D  +
Sbjct: 336 AIPAQHKYVVLGDMLELGEQANELHAGLGQKVLDANV 372


>gi|284039185|ref|YP_003389115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
 gi|283818478|gb|ADB40316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
          Length = 449

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 131/409 (32%), Gaps = 37/409 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++   VS+D+R I    +F+A+ G   DG+ F  QA+A GA   +V  A   +   A+  
Sbjct: 16  QECTGVSTDTRRITPDCLFIALKGGNFDGNQFAEQALASGARYALVDDAAVAERDRASGT 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRS 140
                L+V +    L   A          ++ +TG++GK++    +  +          +
Sbjct: 76  DRC--LLVADGLTALQDLARHHRQTFTFPVIGLTGSNGKTTTKELIAGVLSKKYNLYATA 133

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  +  IG   T+                    LS      +  + + A+          
Sbjct: 134 GNLNNHIGVPLTL--------------------LSLNEQHELAIIEMGANHQKEIAFLCS 173

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                 G  TN+G+ H++     +     K  L++ L        I + D     + +  
Sbjct: 174 IALPTHGLITNIGKAHLEGFGGIEGVRIGKGELYDYLAQNAKTVFINSRDKTLMAMYRER 233

Query: 261 HNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             +     +     +       ++   + ++  V +       +    LPG +   N L 
Sbjct: 234 LKSIRSETTFAEAIFYPAANPDEETTTLISESPVVVYKNASGHEITTHLPGRYNFNNMLA 293

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +    G+        +   +    R + V        +   Y    +S+   ++   
Sbjct: 294 ALAIGDYFGVSPEEANRAIADYNPTNNRSQQV-IKGTNTVLLDAYNANPSSMAAAIQQFA 352

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGK----IALDLADIAIVTDDNPRS 422
              + R  V+ G   +               IA    D+ I+   + R 
Sbjct: 353 ATPAKRKAVILGDMYELGDESEAEHAALGKLIAESNFDLVILAGKDMRF 401


>gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechocystis sp.]
          Length = 454

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 155/444 (34%), Gaps = 45/444 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +IN + +D+R + +G +F+A+ G   DGH FIPQA+  GA A+V             
Sbjct: 26  EDIRINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDRPVE------G 79

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +       +V++T       A+    +    I+ VTG+ GK++    +  +  + G    
Sbjct: 80  LGETVAQFLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFG---- 135

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                    +  +               L          V +     G      D  K  
Sbjct: 136 ---------NVHKTRANYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPT 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  HI    ++ A   AK  L     P ES AI+  D+A   E  +R      
Sbjct: 187 IGLITNVGTAHIGLLGSELAIAEAKCELLAHQ-PPESTAILNRDNALLMETAQRF--WQG 243

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + ++ G +G  +H            V++           PL G     N L A  L   +
Sbjct: 244 KTITYGLEGGDVHGTVDGENLILDGVSL---------PLPLAGVHNASNYLAAIALAQCL 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D   +   L  + +  GR            +   Y     S+   L  +      R +
Sbjct: 295 GLDWQQLQSGL-TVELPKGRARRYQWGQDVVLLDETYNDGLESMLASLDLLANTPGKRRL 353

Query: 386 VVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GF 439
            V G     G       + +  K+     D   +  ++P +   + I A   +G+    F
Sbjct: 354 AVLGAMKELGDYGPTFHQRVGAKVKALGLDGLFLLANDPNT---DAIAAG-ANGVETQSF 409

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLV 463
            +  + + A++T    L   D L+
Sbjct: 410 SDGPSLVAALKT---TLQPGDRLL 430


>gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
          Length = 464

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 156/405 (38%), Gaps = 24/405 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +    LI   +   +   +  I+ VS+D+R +  G ++VA+ G + DGH F   A A+G
Sbjct: 2   KRTLLSLIAHWAGGEIHGDDVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQARG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V     ++          P ++V ++   L+  A+ +       + A+TG++GK+
Sbjct: 62  ASALLVERLLPIE---------LPQVLVADSELALAKIATGMQRDRGTEVFAITGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SV S +  I Q+    + ++           +              +            +
Sbjct: 113 SVKSLLLSILQQVAQHAHKV--------VYANPGNRNNEIGLPLAVIDAPEDADYAVYEM 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A   G   +  D  +       N+   H++   +       K  ++  L P +  A+I 
Sbjct: 165 GAGKPGDIAYLTDIARPRYALVNNIAPAHLERMGSLLGVAVTKGAIYAAL-PADGVAVIN 223

Query: 248 ADDAYSKEVMKR--AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDAY +   +      A CRVL  G +    I  + + A     Q T+     +   + 
Sbjct: 224 VDDAYGRWFEQHFVGTPARCRVLRYGLEHTADITARDIRAGAQGNQFTLVSPAGEARVVL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V NAL AA L +A G+D AL+   L +   VPGR   +    R G + VD ++
Sbjct: 284 GLPGRHNVSNALAAASLALAAGVDLALIAAGLAEAQPVPGRQ--IAHQLRNGAVLVDDSY 341

Query: 365 TSNSLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +N        +          +V G   +       +  +  + 
Sbjct: 342 NANPGSLAAAIDALAAAPEEGWLVLGDMRELGPDAEALHAQAGIR 386


>gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK408]
          Length = 456

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 98/479 (20%), Positives = 178/479 (37%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  E+++  +    Q+    +     DSR I+ G +FV + G + DGH FI
Sbjct: 1   MKL---YLYEIAEVLSAKNDVT-QFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  QGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  ATAFTQGAAATLSERPVAE----------GAYILVDDVLTAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFDCNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+  A + +   +L +   R E+      G  I 
Sbjct: 263 QKIDLPVTGKYNATNAMIAAYAALQEGVSEADIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKG 439


>gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 456

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 101/471 (21%), Positives = 165/471 (35%), Gaps = 47/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F EL+  L    +   + + + VS+DSR IQAG +FVA+ G + DGH ++ Q  A
Sbjct: 2   LKPMTFAELLVPLDARRVGG-DCRFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA   +V              +  P LVV +TRK L+   +        + + AVTG+S
Sbjct: 61  KGAVGALVEREVEG--------ATLPQLVVLDTRKALAQLGAMNRNAFVDKPVAAVTGSS 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I +  G      G  +                      L          
Sbjct: 113 GKTTVKEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + AS  G   + +   K      TN G  H+           AK  + E L      A
Sbjct: 160 IELGASRVGEIAYTVSLTKPHVAMITNAGSAHVGEFGGPDKIVEAKGEILEGL-DATGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++  +D       KRA N      ++      ++   +          T++         
Sbjct: 219 VLNLEDKAFPIWRKRAGNRAVLTFALADTAADLYASDLSRDARGCPGFTLNSPLGKAQVQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             L G   V NAL AA    A+G+    ++  L  +  V GR       S G R+  D Y
Sbjct: 279 LNLLGAHNVTNALTAAAAACALGVSLEGIVTGLNNVQPVKGRA-VAQIASNGVRVIDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDN 419
                S+   +  +   T   ++V+   G   D   QG R +    A  ++ +  V    
Sbjct: 338 NANPASINAAVDVLTGFTGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAVGP-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                       + H +  F E      ++ E I       +    L++ G
Sbjct: 396 -----------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
 gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
          Length = 457

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 175/481 (36%), Gaps = 56/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +        + +  IN++  DSR I AG +F+ + G + DGH 
Sbjct: 1   MKLT------LHEIAKVVGAKNNVTAYEDVAINQIEFDSRKITAGDLFLPLKGVR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A               + ++   ++V++  +     A+    K   +++
Sbjct: 54  FIQTAFENGALATFTEKD---------LPADQAHILVEDALEAFQKLAAYYLEKTGVDVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G                 + I L     ++ 
Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQG--------------NYNNEIGLPYTALHMP 150

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + K      T +G  H+++  ++      KM++ +  
Sbjct: 151 DDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG- 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P  S  ++ +D      ++     +   V+  G       L        K  +T S   
Sbjct: 210 MPDGSLLLVPSDP-----IVDPFLPSNLEVVRFGEGSD---LTVSELTEYKDHLTFSTNF 261

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D     P+ G++   NA+VAA +    G+    +   L  L +   R E+    + G  
Sbjct: 262 LDGQITLPVTGKYNATNAMVAAYVAKHWGVTEENIFSALANLQLTKNRTEW-KKAANGAD 320

Query: 358 IYVD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++++IL+    I     G+ I V     +  +    +  ++ L LA  A
Sbjct: 321 ILSDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLAPDA 380

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           I T      ED   +        P             ++ +A ++   E L + D +++ 
Sbjct: 381 IDTVIF-YGEDIADLSQLASQMFPIGHVYYFKKTADEDQFDAMVKRIKESLGEHDQILLK 439

Query: 466 G 466
           G
Sbjct: 440 G 440


>gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 464

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 137/377 (36%), Gaps = 27/377 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +Q G +FVA+   + DGH F+ QA+ +GA A +VS           +  + 
Sbjct: 24  TGVSIDTRTLQPGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------IPEGVPEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+ +  L         +    ++ VTG+ GK+S    +  I +  G +   +   
Sbjct: 77  PLLIVDDVQTGLEALGHAARARTAARVVGVTGSVGKTSTKEMLASILETRGKTHASV--- 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ +       V     +H G         +   G  
Sbjct: 134 -----------ASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAHQARPHVGLV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++   +       K  LF+ L      AI+ AD  ++  +  RA   G +++ 
Sbjct: 183 TTVAAVHLEAFDSVAGIAAEKAALFDGLT-DGGTAIVNADIEHAGILRSRAQARGAKIVE 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G   +   L  V    +  +    V   +  F     G     NAL A   C+ +G+D 
Sbjct: 242 FGRMARDYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGALAACVELGVDL 301

Query: 330 ALVLEHLEKLHVVPGR-FEFVGTNSRGGRI--YVD-YAHTSNSLEMILKNIRTITSGRII 385
              +  L     V GR    V     G RI    D Y     S+E  L  +      R I
Sbjct: 302 DQAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSMEAALDVLAASAGQRRI 361

Query: 386 VVFGCGGDRDQGKRPIM 402
              G   +    ++ + 
Sbjct: 362 AFLGDMKELGAQEQAMH 378


>gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
 gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
          Length = 460

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 176/479 (36%), Gaps = 50/479 (10%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L  K   +L   +       Q    +IN V  DSR +  G +F+A+ G K D H F+   
Sbjct: 4   LTLKQLTKLTGGVLYHTSEQQAATCQINTVEIDSRKMVRGGLFIALKGEKFDAHDFVADV 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             QGA A++V+    +         + P +VV+NTR  +   A+ +  +    I+A+TG+
Sbjct: 64  AKQGAGALLVNRRLEI---------DCPQVVVENTRLAMGKLAAWVRQQSKARIVALTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK+SV      I  + G + +      T  +F  D        I +   L  L+ +   
Sbjct: 115 SGKTSVKEMTAAILCQRGHTLY------TAGNFNND--------IGVPLTLFRLTEEHQF 160

Query: 184 HVSVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            V    ++H G   +  +     +    NL   H++   +      AK  +F  L     
Sbjct: 161 AVIELGANHIGEIAYTAEMTCPESALVNNLFAAHLEGFGSLAGVAKAKGEIFAGL-SSAG 219

Query: 243 PAIIY---ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            AII     D  + ++ M          +S   +  F +   +          +     +
Sbjct: 220 TAIINLDSNDWTHWQQGMSEPQAVWRFAVSPVPEADF-YATDIQEQPLATSFCLHTPIGN 278

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PLPG+  + NAL A+ L I++G   + +   L +L  V GR   +        + 
Sbjct: 279 IEVTLPLPGKHNIANALAASALAISVGASLSDIRAGLLELKPVSGRLFPIRLAEGKIVLD 338

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI-- 414
             Y     S+      +  +    ++VV   G   DQ     R +   +A    D  +  
Sbjct: 339 DTYNANIGSMIAAANTLSQMPGYHVMVVGDMGELGDQTVECHRQVGEALASTKIDKIMSV 398

Query: 415 ------VTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQ 459
                 +++ + R +        +   +P          + KG+R  A+   +  L + 
Sbjct: 399 GEFSSHISETSGRGQHFANKAELVAALLPLLEQHEMISILIKGSRSAAMEEVVNTLKEN 457


>gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
 gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
          Length = 456

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 92/468 (19%), Positives = 164/468 (35%), Gaps = 38/468 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+  +  +    +N   I      +   + V +DSR I A  +FVA+ G + DGH ++ +
Sbjct: 2   LKPWLLSEVAANLNARVI----GADVAFSAVGTDSRTIAADQLFVALNGPRFDGHDYLAE 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             A+GA A +V    +         +  P L+V +TR  L    +        ++ AVTG
Sbjct: 58  VAAKGAVAALVEREVA--------NAPLPQLLVADTRVALGQLGALNRQAFKGSLAAVTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK+SV   +  I +         G    + +   +      +P+ L   L  +     
Sbjct: 110 SSGKTSVKEMLASILRA--------GLNGAVLATRGNLNNDLGAPLTL---LELVPEHRA 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+  G   + +   +      TN G  H+      +    AK  + E L P + 
Sbjct: 159 GVIELGANHVGEIAYTVSLTQPQVAIITNAGNAHVGEFGGPEKIVEAKGEILEGL-PSDG 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            A++  DD       +RA        ++   +  F            Q  T+        
Sbjct: 218 VAVLNLDDKAFVTWQRRAAGRKVLSFALRDTRADFHGSDLARDERGCQGFTLRSPIGSAR 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L GE  V NAL A     A+G+    +++ LE L  V GR         G R+  D
Sbjct: 278 IQLNLLGEHNVANALAACAAAHALGMPLVAMVQGLESLQPVKGRA-VAQLAPNGVRVIDD 336

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVTDD 418
            Y     S+   +  +   +   ++V+   G   +  +     +G+ A    D       
Sbjct: 337 SYNANPVSMCAAVDILAGFSGRTVLVLGDMGELGEWAEQGHRDVGRHAAGKVDALYAVGP 396

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             R          +           ++ E I  A+        L++ G
Sbjct: 397 LMRF--------AVEEFGSKGRHFVDQAELIE-ALRAEQAGSTLLIKG 435


>gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 452

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 168/464 (36%), Gaps = 42/464 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  +    +   +  I+ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAILNGELHGADADIDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         + P LVV +TR      A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RKLDI---------DLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I    G + +  G  +                      L          + + A+  G 
Sbjct: 120 AILGECGNTLYTAGNLNN-------------DIGVPMTLLRLTPEHEYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  +F  L P    AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGL-PANGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            +    +  + T+     D D L PLPG   + N
Sbjct: 226 NWQSVIGDRKVWRFSPNLDTSDFSATNIHITSHGTEFTLRTPTGDVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +A+G     +   L KL  VPGR   V        +   Y     S+    +
Sbjct: 286 ALAASALAMAVGAPLQAIKAGLAKLKAVPGRLFPVHLGENQLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI----VTDDNPR------ 421
            +  +   R++VV      G + +   + +         D  +    +++   R      
Sbjct: 346 VLSEMPGYRVMVVGDMAELGDEAEACHQQVGEAAKAAGIDKVLSVGTLSEGISRASGVGE 405

Query: 422 -SEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
              D + + A +      H I   + KG+R  A+   +  L + 
Sbjct: 406 HFRDKQAVIARLKTLINEHSIITLLVKGSRSAAMEEVVRALQEN 449


>gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc fallax KCTC 3537]
          Length = 451

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 85/407 (20%), Positives = 165/407 (40%), Gaps = 37/407 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++  +   E++N     P Q ++   I+ V+ DSRH++ G +F+A+V    DGH +I  A
Sbjct: 2   NITLEKLAEVLNA----PFQGKDSVAISGVAFDSRHVKEGQLFIALVAEN-DGHDYIENA 56

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A GA A++V S + L++       + P ++VD+T   +         +    ++A+TG+
Sbjct: 57  LANGAHAVLVDSQHQLKE-------DWPAVIVDDTLVAMQKLGQWYRHQVNPKVVAITGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++      +I  +      Q     T  ++  +  +           LS   S  V 
Sbjct: 110 NGKTTTKDMAAEIANQ------QYRTFKTPENYNNEIGVP-------MTLLSMPESTEVL 156

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G        ++      T +G  HI++ +T++    AK+ +   L   E  
Sbjct: 157 IVELGMDRPGQLTVLSHLVEPDIAIITMIGEAHIEFFKTRRNIAKAKLEIINGL-KAEGT 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            II  D+     + +   +    V + G     ++   +   +N+ Q  I+       F 
Sbjct: 216 LIIPNDEPL---LTQEISHIEQHVKTFGTIDADVNATDISVENNQSQFNIN----QQKFA 268

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ G + + NAL A      + ID     + L    +   R E + T + G  I  D Y
Sbjct: 269 IPMLGRYNIMNALAAITAGNLLHIDLKNAQKALLDFDLTKNRTEILHT-THGVTIISDVY 327

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                +++ +L  + +    G+  VV G   +  Q    +   +A  
Sbjct: 328 NSNPTAVKAVLATLVSREVQGKRYVVLGDMLELGQQAGIMHAGLAES 374


>gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
 gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
          Length = 430

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 141/385 (36%), Gaps = 35/385 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-SLQDFSATI-- 86
            N V++DSR +    +F+ + G ++DGH +I QA+ QGA+ ++  +A+  +Q+ +  I  
Sbjct: 26  FNSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQQGADCVLADAAHLDIQENAQHILV 85

Query: 87  ---RSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGL 142
              R     + V+ T K L   A+    + P+ + + VTG++GK++    +  I  +   
Sbjct: 86  LCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKIGVTGSNGKTTTKELLASIFAQKYR 145

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G                          +      V    +  +  G        +
Sbjct: 146 TVKNEGNL-------------NSETGLPLSVFTITKEHEVGIFELGMNRKGEIAELAAVL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K      TN+G  HI    ++ A    K  +F     + S   + A D Y++ +    H 
Sbjct: 193 KPNIAVITNIGTAHIGMLGSKDAIAQEKKHIFS-CFDETSVGFVPAQDKYAEFLQDVPHG 251

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              ++++         L+ +          I  +G+      PLPG+  V+NA  A  + 
Sbjct: 252 ---KIVTYSADPDAYTLEGL------SGAEIRYKGET--IHLPLPGKHNVHNAFAAIAVA 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381
               I    +   +E++  + GR + +        +   Y    +S+   L     I  S
Sbjct: 301 EYCKIPLQSIKAGIEQMQALFGRSQII--RGPVTYLLDCYNANPDSMNAGLALCANIRVS 358

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIA 406
           G+ I V     +           + 
Sbjct: 359 GKKIYVLASMKELGFESHEAHKAVC 383


>gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
 gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
          Length = 457

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 87/436 (19%), Positives = 161/436 (36%), Gaps = 31/436 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + D+  +     ++   I   +     IN VS+D+R ++ G +FVA+VG + D H F  Q
Sbjct: 1   MIDVSLEQICSAVSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+   A A++V     L         N   +VV++T+  L   ++ ++ +     +A+TG
Sbjct: 61  AVEANASALLVERKLDL---------NITQVVVEDTKLALGQLSAWIHKQCNVPTMAITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++V   V  I Q+ G   F      T  +F  D  +           L   ++   
Sbjct: 112 SCGKTTVKEMVASILQQRGKVLF------TAGNFNNDIGVPL-------TLLRSEANDDY 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+  G   +    +K       N+   H++   +      AK  +F+ L   + 
Sbjct: 159 AVIELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGL-AADD 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD 301
            AI+  +            +      S          K +C     +    +        
Sbjct: 218 TAIVNLESNGGDFWNDVLADKSVLTFSESDSKADYFAKNICINEQGEACFDMQTPQGSIF 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+  V NAL AA L I  G     V   L  L  V GR E    +     I   
Sbjct: 278 VELGIIGQHNVANALAAAALSIQFGASLDEVKNGLANLISVKGRVEVQQLSQNIKLIDDS 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDN 419
           Y  +  +++   K + +    R +++       D+       +G+ A   A   ++T   
Sbjct: 338 YNASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT--- 394

Query: 420 PRSEDPEKIRAEIIHG 435
               D  K+ +E+ +G
Sbjct: 395 --YGDDTKVISEVCNG 408


>gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK160]
          Length = 456

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 98/479 (20%), Positives = 178/479 (37%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  E+++  +    Q+    +     DSR I+ G +FV + G + DGH FI
Sbjct: 1   MKL---YLYEIAEVLSAKNDVT-QFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  QGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  ATAFTQGAAATLSERPVAE----------GAYILVDDVLTAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFDCNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+  A + +   +L +   R E+      G  I 
Sbjct: 263 QKIDLPVTGKYNATNAMIAAYAALQEGVSDADIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKG 439


>gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 463

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 168/453 (37%), Gaps = 45/453 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  V+ DSR IQ G +F A+ G + DGH ++  A  +GA   VV S           
Sbjct: 21  DFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVDAAFKRGAAGAVVMSPVPY------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P ++VD++ + L   A     ++   I+ +TG+ GK+S    ++   +R       
Sbjct: 74  ----PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALERMAPEKVH 129

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLI 205
                        +  +  + + +  +L+ +  + +  +     +H  +       ++  
Sbjct: 130 Y------------SLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDLTKLVQPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H  +   + A   AK  +FE LL     AII  D  Y   +  +      
Sbjct: 178 VALITAIAPAHAAFFADETAIAEAKSEIFEGLL-SGGIAIIPHDSPYRDLLTAKVQEKKA 236

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            + S G+ +G  I  + +    + +  VT S+  +   F   +  E+ + NA+    +  
Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAMAVLAVVD 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHTSNSLEMILKNIRTIT 380
           A+G D  L    L  +    GR +        G  I +D  Y     S+   +K +    
Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIKALENEP 356

Query: 381 SGRIIVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             +  +V        G +     R +   ++    D  ++               E + G
Sbjct: 357 KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVG------QEMAALEESLAG 410

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 IEK ++ EA+    E+L   D+L+V G
Sbjct: 411 KIACDRIEKADQAEALLD--EILKADDILLVKG 441


>gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
 gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
          Length = 452

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 147/387 (37%), Gaps = 27/387 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                   VS+D+R +Q G +FVA++G++ DGH ++ QAI +GA A+++S    +     
Sbjct: 20  GANIPFQSVSTDTRTLQPGDLFVALIGDRFDGHEYVQQAIEKGASAVLISKRMEVT---- 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P L V +T + L         +    ++A+TG+SGK++V   +  + ++     
Sbjct: 76  -----VPFLQVADTTEALGRLGLYNRLRFENPVVAITGSSGKTTVKGMMATLLRQQNEVL 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G          +      +P+ L   L    S     + + AS  G   +  +  + 
Sbjct: 131 VTRG----------NLNNHIGAPLTL---LRLSDSDDYAVIELGASGLGEIAYTAELARP 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H++   + +     K  + + L   +  A++ AD  Y +E  KRA +  
Sbjct: 178 TVSILTNAGNAHLEGFGSVEGIVKTKGEIIDAL-ADDGVAVLNADSPYFEEWQKRAGSRR 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                                +     T+ +  +       + G+  V+NAL  A  C+A
Sbjct: 237 VISFGETLSADIRATDIQSNANGCCAFTLHINDEQSQVQLSVMGKHNVFNALACAAACVA 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           + +   L++  L+    V GR         G RI  D Y     S+   +  + + +S  
Sbjct: 297 LDMPPKLIVSGLQLFEGVEGRL-LEKQGLNGSRIIDDSYNANPASVRAAVDVLASRSSHT 355

Query: 384 IIVVFGCGG--DRDQGKRPIMGKIALD 408
           I V+                +G  A +
Sbjct: 356 IFVLGDMAELGVETHLAHAEVGAYARE 382


>gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 458

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 150/413 (36%), Gaps = 28/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + +        +  +  V++D+R +  G +F+A+ G   DGH F  +A  
Sbjct: 1   MIATTLRTLADAIGATLY-GDDAPLAAVTTDTRKLTPGCLFIALQGESFDGHDFAARACE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    L           P L+V +TR  L   A+ +  + P  ++A+TG+SG
Sbjct: 60  AGAAALLVSRRLPL---------GVPQLLVADTRLALGQLAAWVRSQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G   +  G  +                      L          +
Sbjct: 111 KTSVKEMSAAILAQCGNVLYTAGNLNN-------------DIGVPLTLLRLEPQHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +   +  +    NL   H++   +      AK  +F  L P +  AI
Sbjct: 158 ELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLAGVARAKGEIFSGL-PAQGTAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I AD        +          S     G   +  +V +  +     +     +     
Sbjct: 217 INADSNDWDNWQQALPTQRVWRFSPQAGSGVDFYASEVRSEVDGTHFVLHTPTGEIAVTL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   + NAL AA L +++G     V + L  LH VPGR   +    +   +   Y  
Sbjct: 277 PLPGRHNIANALAAAALTMSVGASLTQVRQGLAGLHAVPGRLYPIRLGEQQLLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
              S+    + +  +   R++VV      G + +   R +         D  +
Sbjct: 337 NVGSMSAAAEVLGAMPGYRVMVVGDMAELGVEAEACHRRVGEAARAAGIDKVL 389


>gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 456

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 165/477 (34%), Gaps = 72/477 (15%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            Q+ +    +V  DSR I  G +F  + G + DGH FI  A   GA A +          
Sbjct: 19  HQFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHGFIVTAFENGAAATLSEKELD---- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P ++VDN    L   A     K   ++ AVTG++GK++    +  +   +  
Sbjct: 74  ------DYPYILVDNVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKDMLAHLLSTTYK 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                  L              V      H  D H L  I
Sbjct: 128 TYKTQGNYNNEIGLPYTVLHMPDDTEKL--------------VLEMGQDHMGDIHLLSTI 173

Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +   G  T +G  H+++ +++      KM++ +  +   +  ++ AD     +++    
Sbjct: 174 AQPKVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDG-MKDGTLLVVPAD-----KIINDFL 227

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            +   V+  G       +        K  ++      D     P+ G++   NA++AA +
Sbjct: 228 PSQLNVVRFG---PDEDIFLTKLEERKDSLSFETNFLDNAIDLPVTGKYNATNAMIAAYV 284

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +  G+    + +    L +   R E+      G  I  D Y     ++ +IL+   TI 
Sbjct: 285 ALKEGVTQDKIQKAFATLELTRNRTEWKKAK-NGADILSDVYNANPTAMRLILETFSTIP 343

Query: 381 ---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               GR + V     +     + +   +         +T  NP      +I +EI     
Sbjct: 344 FNEKGRKLAVLADMKELGVDSKQMHSAM---------ITSLNP------EILSEI----- 383

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
            F+   +       A E+          GK H   + V N EK    D    ++E L
Sbjct: 384 -FLYGEDMAALFAYAKEIFPP-------GKAH---YFVKNAEKDQFSDLVKAVKEAL 429


>gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase, degenerate
           [Bacillus cereus Q1]
 gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus Q1]
          Length = 451

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 88/493 (17%), Positives = 196/493 (39%), Gaps = 60/493 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+I+   ++   +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 1   MNLKKL-----EEVIDGEGLY-ESFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 107

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++V   +  I        +  G  + QIG   TI    ++              
Sbjct: 108 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILE------- 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +  S  G  ++     +      T +G+ H++   +++    AK  +
Sbjct: 161 -------------MGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEI 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT 292
            + L   +   +   D+     + +  +  G    S G  GK+   L       ++  V 
Sbjct: 208 VDGL-HDDGLFLYNGDEPL---LSQHINTLGIESKSFG--GKYTNDLFPTNVQLDEYGVH 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +      +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+   
Sbjct: 262 FKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAK 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGG--DRDQGKRPIMGKIALD 408
           +    I   +    +S++  ++ ++ +     ++IV+        + +     +GK+  +
Sbjct: 322 AGFTIINDAWNANPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNE 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
            +   + T       +  KI AE    +   G ++  +    I    ++++ K+DV+++ 
Sbjct: 382 DSIQYVFT-----YGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLLK 436

Query: 466 G-KGHETVHIVTN 477
           G +G     IV  
Sbjct: 437 GSRGMALEEIVQK 449


>gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
          Length = 460

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 88/493 (17%), Positives = 196/493 (39%), Gaps = 60/493 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+I+   ++   +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVIDGEGLY-ESFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++V   +  I        +  G  + QIG   TI    ++              
Sbjct: 117 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILE------- 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +  S  G  ++     +      T +G+ H++   +++    AK  +
Sbjct: 170 -------------MGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT 292
            + L   +   +   D+     + +  +  G    S G  GK+   L       ++  V 
Sbjct: 217 VDGL-HDDGLFLYNGDEPL---LSQHINTLGIESKSFG--GKYTNDLFPTNVQLDEYGVH 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +      +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+   
Sbjct: 271 FKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAK 330

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGG--DRDQGKRPIMGKIALD 408
           +    I   +    +S++  ++ ++ +     ++IV+        + +     +GK+  +
Sbjct: 331 AGFTIINDAWNANPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNE 390

Query: 409 LADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
            +   + T       +  KI AE    +   G ++  +    I    ++++ K+DV+++ 
Sbjct: 391 DSIQYVFT-----YGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLLK 445

Query: 466 G-KGHETVHIVTN 477
           G +G     IV  
Sbjct: 446 GSRGMALEEIVQK 458


>gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK72]
          Length = 456

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 101/479 (21%), Positives = 181/479 (37%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +     +              L+VD+        A     K   ++LAV
Sbjct: 56  PTAFAQGAAATLSERPVAE----------GAYLLVDDVLTAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    I+ AD     +++      GC ++  G       +        K  ++      +
Sbjct: 211 ENGLLIVPAD-----KIVNEFLPTGCDLVRFGPDAD---IFLTRLEERKNSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E ++ A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKG 439


>gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 473

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 91/463 (19%), Positives = 158/463 (34%), Gaps = 34/463 (7%)

Query: 15  INQLSIFPMQWRERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
             +L + P +    ++ +  VS DSR ++ G IFVA+ G + DGH F+     +GA  ++
Sbjct: 13  CGELVMNPGEPMPPEVADPVVSIDSRKVEEGGIFVALPGERTDGHRFVDDVFRRGARMVM 72

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS  +     S         LVV +T   L   A+         ++ V G++GK++    
Sbjct: 73  VSREWYSASGSPLPPPGRGTLVVQDTVSGLQQLAAIYRESFSIPVVGVGGSNGKTTTKEM 132

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +   +                  +       P+ L   L+      +  V +  +  
Sbjct: 133 LGAVLSTAMRVHMS----------HANLNNHLGVPLTL---LAMRRETEIAVVEMGINHP 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +   G  TN+G +H+++         A+  LF  L        +  DD  
Sbjct: 180 GEMELLTSIARPSHGLLTNIGHEHLEFLVNLDGVARAERALFSFLDETGGTIFVNNDDPR 239

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI----HNKQQVTISVEGKDFDFLFPLPG 308
               ++ A     R +  G         +  A+        +  +  E  D +      G
Sbjct: 240 ----LRDAATDPQRHILYGMHCGDCCSCRGGALSVLPDGSLRFMLYSERGDEEIRLNFTG 295

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA + I  GI+   V   LE L    G       ++ G  +  D Y    +
Sbjct: 296 RHNVLNALAAAAVGIFFGIEPREVRRGLEGLVPREGWKRLEVVSAGGVTLLNDTYNANPD 355

Query: 368 SLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           S+ + +  +  +   GR I V G     GD   G+    GK     +   I        E
Sbjct: 356 SMRLAIDALLDMPCQGRRIAVIGDMLELGDAGPGEHEATGKYLAGSSVDMIF----SFGE 411

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               I         G     +R +        L + D ++  G
Sbjct: 412 LAGSICFLNPGRCRGHF--TSREKLFDALSRELEEGDTVLFKG 452


>gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
 gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
          Length = 453

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 158/420 (37%), Gaps = 36/420 (8%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + KD  +++N   I  ++   ++I  ++ DSR ++ G +F+  +G   DGH +I  A  +
Sbjct: 4   LVKDLEQILNAKKINIVE--NKEITGIAIDSRKVKEGDLFIPFLGENVDGHNYIESAFEK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +               S+  I+ V+++   +   A          I+A+TG++GK
Sbjct: 62  GAAASLS--------LKEDFTSDNNIIYVEDSYVAIQALAKHYLDSLNAKIIAITGSNGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  + +       +     T  +F  +  +           L+      +  + 
Sbjct: 114 TTTKDIITGLLET------KFKVHKTQGNFNNELGVP-------ITILAAPEDSEILVLE 160

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A   G        ++      TN+G  HI++  +++    AK  +    + K+   + 
Sbjct: 161 MGADGFGQLDFLSKLVEPDYTVITNIGESHIEFFGSREGIAKAKFEI-TNGMKKDGFFVY 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+   K+++ +++       +   +  + ++        +  +   +   D  F   L
Sbjct: 220 NGDEVLLKDLVDKSNIGA----TSCGENDYNNIILENYTITRDHIDFKLNLSDEKFTTKL 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G+  ++N + A  +   +G+    + + +EK   +   R E +        I   Y  +
Sbjct: 276 KGKHNLFNIMFATAIAEKLGLSIDEIRKAIEKTSEITHMRLESIPYGKDSLIINDAYNAS 335

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCGGD---RDQGKRPIMGKIALDLA---DIAIVTDD 418
             S++  +  +          +V G   +   ++      +G+   + +   D+ I   D
Sbjct: 336 PTSMKASVDVVSGFDDFDYKTLVLGSMFELGSKEVQYHSEVGEYISNNSKDIDLVISVGD 395


>gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 454

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/484 (19%), Positives = 183/484 (37%), Gaps = 63/484 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKLT------LHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A       +            P + VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSEREVA----------GHPYIWVDDCLEAFQALASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         +     T  ++         + I L     ++ 
Sbjct: 104 AVTGSNGKTTTKDMIAAVLST------EYKTYKTQGNY--------NNEIGLPYTALHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + K   G  T +G  H+++  +++     K+++ +  
Sbjct: 150 DDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDG- 208

Query: 238 LPKESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +   I  AD   D Y  E           V+  G  G  I +K +    +K+ +T +
Sbjct: 209 MDSDGILIAPADTIVDPYLPE--------SQMVIRFG-DGAEIFVKDLQ--ESKESLTFT 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    + 
Sbjct: 258 TNVIDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNRTEW-KKAAN 316

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           G  I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++ + L+
Sbjct: 317 GADILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIMSLS 376

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVL 462
              + T      ED  ++        P             ++ +A + T  ++L   D +
Sbjct: 377 PETLDTLIF-YGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETVQKVLQPADQI 435

Query: 463 VVAG 466
           ++ G
Sbjct: 436 LLKG 439


>gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 451

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 165/458 (36%), Gaps = 55/458 (12%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           ++ +  I  VS DSR I    +F+   G   DGH ++ QA+  GA A        L +  
Sbjct: 20  EFMDHGIKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQALKDGAGAAFYQKGEPLDENI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137
                + PI+ VD+T + L   A          ++AVTG++GK++    ++ +       
Sbjct: 80  -----DGPIIWVDDTLEALQHLAKAYLEFVNPQVIAVTGSNGKTTTKDMIESVLKPQFKV 134

Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +  G  + +IG   TI                    L       ++ + +  S     +
Sbjct: 135 KKTQGNYNNEIGMPLTI--------------------LQLDIDTEISILEMGMSGFHEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  H+    +++    AK  +   L P     I   D+   +  
Sbjct: 175 LLSKLAQPDIAIITNIGESHMQDLGSREGIAKAKSEITLGLKP-GGLFIYDGDEPLLEPY 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                NA   ++S G       +  +  I  +    TI+    D  +  P+ GE  + NA
Sbjct: 234 ANEIQNA--DLVSFGKNSDNTLVSTIETIKDHGIAFTINH---DEHYELPILGEHNMKNA 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +A  +   + +    +  +L+ + +   R E   T      I   Y  +  S++  +  
Sbjct: 289 TIAIAVGKRLNLTYQTIFNNLKNVVLTGMRMEQHHTKDEILVINDAYNASPTSMKAAIDT 348

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI---VTDDNPRSEDPEKIRAEI 432
           +  +  GR I+V G   +     + +   + L   D  I    T  N          A I
Sbjct: 349 LSGM-EGRKIIVLGDVLELGPDSQIMHEAVGLYFEDKDIDALFTLGNE--------AAHI 399

Query: 433 IHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAG 466
            H    F++K      + + IR+    +   D ++V G
Sbjct: 400 SHTGKAFVKKSEAFKEKADLIRSLKGYVQANDKVLVKG 437


>gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
 gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
          Length = 272

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 20/236 (8%)

Query: 11  FPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLFIPQAI 64
             EL N L I   +     +I  +  DSR I +G +F+ + G   DG     H F+  A+
Sbjct: 17  LKELANLLMIKETIGDMNIEITGLEMDSRKITSGDLFICVSGI--DGFLEDRHQFVEDAV 74

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
             GA A++V    +++          P ++V + R  +++ AS  YG       ++ +TG
Sbjct: 75  KNGAVALIVERDINIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITG 125

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++ +  +++I    G     +G     + S      + T  P  L + L  + +Q 
Sbjct: 126 TNGKTTTSYLIEKILSDYGYHMGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQN 185

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  LF  L
Sbjct: 186 ADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARL 241


>gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
 gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
          Length = 468

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 150/392 (38%), Gaps = 32/392 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++D+R++Q G  F+A+ GN  DGH F+ +AI +GA  ++V   Y+L      + +N
Sbjct: 30  ITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNSEIQQLSNN 89

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            PIL V+NT K     A     +    +++VTG+ GK++    + ++    G        
Sbjct: 90  IPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELIAEVLATQGKVM----- 144

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T +++  +  +           L   + +    V +     G             G  
Sbjct: 145 -KTEANYNNEIGVA-------KTLLQLSNEENYAVVEMAMRGPGEIAELTHIANPTIGLI 196

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+G  HI    + +A   AK  L  E +   S AI+  D+   + +++ A         
Sbjct: 197 TNVGTAHIGRLGSVEAIAEAKCELLRE-MSDSSIAILNYDN---QRLIETAAKVWSGETF 252

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--- 325
           + G +G  +  K + +       TI+VEG   D   PLPG     N L A  +   +   
Sbjct: 253 TYGLEGGNLQGKLIDSQ------TINVEG--VDLPLPLPGSHNASNYLAALAVLKVLHGK 304

Query: 326 GIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            I +  + + L     + +   R       +    +   Y     S+   L  +      
Sbjct: 305 NIPAKTLFQSLTNNLFVQLPGSRARKYDLKNDIVILDESYNAGLESMIAALNLLAETPGK 364

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           R I V G   +          ++   + ++ I
Sbjct: 365 RHIAVLGTMKELGNKSILFHQQVGNVVKNLNI 396


>gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp.
           1-1C]
          Length = 472

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 91/469 (19%), Positives = 177/469 (37%), Gaps = 39/469 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   LI+ +  F +         VS DSR + AG IF  I G+  DGH F   A AQGA 
Sbjct: 6   DKQALISAMDGFTIGCLPEIFPGVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHAYAQGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV    +        +   P++VV +  + L   A     +    I+A+TG+ GK++ 
Sbjct: 66  VLVV----AQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q  +  G     +               +  +   +   L+ +       +    
Sbjct: 122 KEALKQALETVGKVHANL--------------ASLNNCWGVPLTLARMPIDSDYGIFEIG 167

Query: 190 SSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H    +  +  +       T +   H+++ +  +   +AK  +FE L  K   A++ A
Sbjct: 168 MNHKNEIRPLVKLVCPHVVLITRIAAGHMEFFKDLEEIADAKAEIFEGL-DKNGIALLNA 226

Query: 249 DDAYSKEVMKRAHNAGCR-VLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD +   ++K+A   G + + S G        +K+V  + N   + +    KD       
Sbjct: 227 DDHFFSYLLKKAKQCGVKEIRSFGRSNSADYQVKEVRLLENCSCMVVHFYQKDMMIKIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRI-YVDYAH 364
           PG+  V N L     C  +  D A +   L +  +  GR      + S GG    +D ++
Sbjct: 287 PGQHMVQNGLSVLAACDTVCADLAHITLALGRFSLQKGRGALYKLSLSNGGMFHLIDESY 346

Query: 365 TSNSLEM-----ILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +N + M     +L        G+ I +       G    +  R ++  I +  AD+  +
Sbjct: 347 NANPVSMLTALDLLATGPIGVGGKRIAILGDMLELGDHSKKLHRDLLEPIRVSGADLVFL 406

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  ++   +  ++   +  +    N  E        ++  D++++
Sbjct: 407 -----VGKEMGVLARDLSAYVTVY-HAENIEEIFPLVFSEISNGDLIMI 449


>gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 475

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 155/442 (35%), Gaps = 35/442 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R + AG IFVA+VG   DGH  I +A+  GA  ++      ++D         
Sbjct: 37  TGVSIDTRTLAAGDIFVALVGENSDGHAHITRALDAGAAVVIAHRDPGVED--------A 88

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            IL+VD+T   L+  A+    +    ++AVTG+ GK++    ++      G + + +   
Sbjct: 89  RILLVDDTLSALNAMAAFARTRFAGRMIAVTGSVGKTTTKDMLRHALGACGPTHWAV--- 145

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ L +  +     V  ++ G        ++      
Sbjct: 146 -----------ASYNNHWGVPLTLARLPASAMFCVCEVGMNNPGEIAPLAQMVRPDVAVI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +  + +A    K  L   L P++  AI+  D         +A N G R+ +
Sbjct: 195 TTITGAHLGHMGSLEAIAREKSDLIAAL-PRDGVAIVPDDVTGMAIFATQARNHGARLWT 253

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G + G    ++      +       ++G         PG     NALVA     A+G D
Sbjct: 254 AGTHPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRHMAGNALVALTAAYAVGAD 313

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
            A  +  L       GR            +  + Y  +  S+   L  +  + + R I V
Sbjct: 314 MACAVRGLADFRPGAGRGAITPILHGQASLLDESYNASVASIRATLDVLGQVPARRRIAV 373

Query: 388 FGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            G   +     R     +     + AD+      N       K   +++          +
Sbjct: 374 LGDMLELGAFARDQHESLLPDVREHADLVFCCGPN------MKYLFDLLPPSRRGAWAPD 427

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
                      +   D ++V G
Sbjct: 428 AATLAPQVRAAMRAGDAILVKG 449


>gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
          Length = 460

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 87/493 (17%), Positives = 195/493 (39%), Gaps = 60/493 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+I+   ++   +   +I+ V  DS++++ G +FV I+    DGH ++
Sbjct: 10  MNLKKL-----EEVIDGEGLY-ESFHHLEIHGVCIDSKNMKEGNLFVPIIRMN-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++V   +  I        +  G  + QIG   TI    ++              
Sbjct: 117 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILE------- 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +  S  G  ++     +      T +G+ H++   +++    AK  +
Sbjct: 170 -------------MGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT 292
            + L   +   +   D+     + +  +  G    S G  GK+   L       ++  V 
Sbjct: 217 VDGL-HDDGLFLYNGDEPL---LSQHINTLGIESKSFG--GKYTNDLFPTNVQLDEYGVH 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +      +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+   
Sbjct: 271 FKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAK 330

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGG--DRDQGKRPIMGKIALD 408
           +    I   +    +S++  ++ ++ +     ++IV+        + +     +GK+  +
Sbjct: 331 AGFTIINDAWNANPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNE 390

Query: 409 LADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
            +   + T       +  KI AE    +   G ++  +    I    ++++ K+DV+++ 
Sbjct: 391 DSIQYVFT-----YGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLLK 445

Query: 466 G-KGHETVHIVTN 477
           G +G     IV  
Sbjct: 446 GSRGMALEEIVQK 458


>gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 448

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 162/432 (37%), Gaps = 56/432 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +   S +S++I+   +F+ + G++ DGH FI +A+  GA + +    +         
Sbjct: 22  DVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAISFISQKDFD-------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC-------Q 138
               P + V++T   L   A  +  K     ++ VTG+ GK+S   ++  +        +
Sbjct: 74  DLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEYIFNVLSLRYKAFK 133

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G  +  IG   +I +  +D +                    V    +  S+ G     
Sbjct: 134 NQGNFNNHIGLPISILNMPEDTQ--------------------VAVFEMGMSNFGEISKL 173

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K   G  TN+G  HI+  +++   F AK  + +  +P+    II  D+       K
Sbjct: 174 SQIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDG-MPESGILIINNDNDILNLHKK 232

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                  +V+++G + +     +    H       S E   + +         +YN+L A
Sbjct: 233 ELKR---KVVTIGIENESNFRAQNVQRHQNG---FSFEVGGYTYFIESFNFHDIYNSLFA 286

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             +   +G+D  L+ E + +   +  RFE +   S    I  D Y  +++S+   + +I 
Sbjct: 287 IAVGTILGVDRELIKEAIRQKERLKRRFEVIKKGS--ITIVDDTYNASTHSMLSAIDSIC 344

Query: 378 TITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                +I+V   +   G   ++  R +   I     D+ I T  +        I  E+  
Sbjct: 345 EFDGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFY-----IFDEVKK 399

Query: 435 --GIPGFIEKGN 444
             G   +    +
Sbjct: 400 KDGTKAYFVTKD 411


>gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
 gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
          Length = 456

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 142/377 (37%), Gaps = 24/377 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ ++ DSR ++ G +FVAI G K DGH ++  A+ +GA A +V    S         S
Sbjct: 27  EVSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEAALERGAGAALVQQQVS---------S 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P L+V ++   L  F +     +   ++ +TG++GK++  + + +I  R+G      G
Sbjct: 78  ALPQLIVSDSEAALQTFGAMTRAAYDGILVGITGSAGKTTAKNMLAEILSRAGSVVATKG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +                 Y    L              A   G      +  +     
Sbjct: 138 NQNNELGVPLTLADLNNDTEYAVLEL-------------GAGKPGDIARLCEMARPNIAI 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H+    +  A    K  L ++L P +  A+I ADD    +   RA    C   
Sbjct: 185 LLNVAPAHLANFGSLDAISKTKGALLDDL-PADGLAVINADDPRVFDWHVRASPTRCLTF 243

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +  +  +  +       +     +    +D +    +PG   +YNAL AA +  A+GI 
Sbjct: 244 GMNCKADYQAIDLQLKGFSGSDFVLQTPEQDVEVTLNVPGRQGIYNALAAAAVADALGIS 303

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  + E L  +   PGR      +     I   Y     ++   +  + +   GR  +V 
Sbjct: 304 AITIREGLAAVKPAPGRGGVAVLSPDASLIDDTYNANPVAVRAAIDVLAS-EPGRRRLVL 362

Query: 389 GCGGDRDQGKRPIMGKI 405
           G   +    +  +  ++
Sbjct: 363 GAMLELGLDEEKLHAEL 379


>gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia proteamaculans 568]
 gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia
           proteamaculans 568]
          Length = 453

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 99/473 (20%), Positives = 171/473 (36%), Gaps = 44/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + LS   +   + +I EV++D+R +  G +FVA+ G + D H F      
Sbjct: 1   MIPVSLRTLADVLSA-ELIGADCQIVEVTTDTRQVTTGCLFVALKGERFDAHDF------ 53

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
                  V++       S  +    P LVV +TR  L   A+ +  + P  ++A+TG+SG
Sbjct: 54  ---AVDAVAAGAGALLVSKRLLVEVPQLVVKDTRLALGQLAAWVRQQVPTRVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I +  G   +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMAAAILRECGEVLY------TAGNFNNDIGVPL-------TLLRLQPQHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +       NL   H++   +      AK  +F  L P +  AI
Sbjct: 158 ELGANHIGEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGL-PADGVAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + AD+                  S    +G       V       Q  +       D   
Sbjct: 217 LNADNNDWPHWQSMLDGKTVWRFSPQAAEGVDFFASDVQVNGKGTQFRLHSPFGTADIAL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   V NAL AA L ++ G     V + L++L  VPGR   +  +     +   Y  
Sbjct: 277 PLPGRHNVANALAAAALAMSAGASLEAVRQGLKQLQAVPGRLFPIALSDHQLLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA-------- 413
              S+    + +  +   R++VV      G + ++  R +     L   D          
Sbjct: 337 NVGSMTAAAQVLAEMPGYRVMVVGDMAELGAEAEECHRQVGEAARLAGVDKVLGVGPLSQ 396

Query: 414 IVTDDNPRSE---DPEKIRAEII-----HGIPGFIEKGNRIEAIRTAIEMLNK 458
           ++T+ +   E   D   + A +      H +   + KG+R  A+   +  L +
Sbjct: 397 VLTEASGNGEHFQDKAAVIARVAELLSEHAVITVLIKGSRSAAMEQVVRALQE 449


>gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 462

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 154/407 (37%), Gaps = 32/407 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +   +F E++    I        K + VS DSR ++   +F AI G + DGH F+     
Sbjct: 6   MTIGEFAEMLGS-DIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQA--- 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
                    +  +    +  +  + P ++V +TR+ L   A +   K    ++AV G++G
Sbjct: 61  ------ASDAGAAAAVVTHFVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    V  I +        +G    +++            + ++  L  L  +     
Sbjct: 115 KTTTTQMVLSIIKERFQKGAWVGTEGNLNN-----------ELGVSLMLWKLRPEHQAAC 163

Query: 186 SVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                +H G  +  +  I    G+ TN  RDH ++  + +        +F +L P++  A
Sbjct: 164 FEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQL-PRQGVA 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I A D ++ E  K A N   RV++ G     ++  +V          +       D   
Sbjct: 223 VINAADPFAVEWRKMAGNN--RVVTFGTPDSDVYACEVE----GTAFRLVTPIGQIDIEL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  + NA+ AA +  A+G D   + + LE    V  R E V  +     I   Y  
Sbjct: 277 KVPGKHNIVNAVNAAAVLFAMGRDLCDIKKGLENFEAVSHRGEVVTLDDGSVVIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
             +S+   +  +      +I V    G    +       +G+     
Sbjct: 337 NPDSMNAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRRC 383


>gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
 gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
          Length = 453

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|319952318|ref|YP_004163585.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga
           algicola DSM 14237]
 gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga
           algicola DSM 14237]
          Length = 436

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 134/379 (35%), Gaps = 30/379 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K + +S+D+R +    IF A+ G   DG+ +  +A+  GA+  V+               
Sbjct: 24  KFSTISTDTRKVTKDCIFFALKGENFDGNTYAKKALESGAKYAVIDDE--------RFAD 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +   ++V +    L   A+     +   ++A+TG++GK++    +  +   +  +   +G
Sbjct: 76  SDATILVPDVLTCLQQLANFHRNFYKTKVIALTGSNGKTTTKELINSVLCTTYKTIATVG 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +       P+ L   L+      +  + + A+     +   +  +   G 
Sbjct: 136 ----------NLNNHIGVPLTL---LAIKEDTEIAIIEMGANHQKEIEFLCNIAEPDFGY 182

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN G+ H++   + +     K  L++ L   E P    ADD        +A+     + 
Sbjct: 183 ITNFGKAHLEGFGSFEGVIKGKSELYDYLQKDEKPIFFNADDEL------QANKLSNYIN 236

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G+     H   +        V I  E ++   +  L G +   N   A  +     + 
Sbjct: 237 KFGFSETDSHYYNIQLKEADPFVQIIFENQE--IVSNLIGAYNFINCCAAIIMGKYFNVS 294

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   +E+      R + +  N+    I   Y    +S++  L N   + + + IV  
Sbjct: 295 IDQIKNGIERYIPSNNRSQVLTQNTNEI-ILDAYNANPSSMKAALDNFSKLKTTKKIVFL 353

Query: 389 GCGGDRDQGKRPIMGKIAL 407
           G   +           IA 
Sbjct: 354 GDMFELGSTAPEEHQHIAE 372


>gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 377

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 140/392 (35%), Gaps = 29/392 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V           
Sbjct: 1   GGDCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQG----- 55

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +  P LVV +TRK L+   +          + AVTG+SGK++V   +  I +  G  
Sbjct: 56  ---AALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVKEMLASILRTRGPV 112

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  +                      L          + + AS  G   + +   K
Sbjct: 113 LATRGNLNNELGVPLT-------------LLELAPEYTSAVIELGASRVGEIAYTVSLAK 159

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN G  H+           AK  + E L      A++  +D       KRA + 
Sbjct: 160 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGL-GAGGTAVLNLEDKAFPIWRKRAGDR 218

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                ++      ++  ++          T++           L G   V NAL AA   
Sbjct: 219 NVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAAAAAG 278

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
            A+G+    ++  L  +  V GR       S G R+  D Y     S+   +  +   T 
Sbjct: 279 CAMGVPLEGIVTGLNNVQPVKGRA-VAQIASNGTRVIDDTYNANPASINAAVDILTGFTG 337

Query: 382 GRIIVVFGCGGD---RDQGKRPIMGKIALDLA 410
             ++V+   G      +QG R +    A  ++
Sbjct: 338 RTVLVLGDIGELGEWAEQGHREVGAYAAGKVS 369


>gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 507

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 90/402 (22%), Positives = 154/402 (38%), Gaps = 35/402 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +D+R IQAG  F+AIVG   DGH F+  AI +GA A++VS                
Sbjct: 47  TRIITDTRKIQAGDTFLAIVGENFDGHNFVTAAIEKGAIAVIVSQPIEALA--------V 98

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P L VD+TR      A+    +H +  ++A+TG+SGK++V   ++ I  +   ++     
Sbjct: 99  PQLKVDDTRLAFGQIAAYRRQQHAKLKVIALTGSSGKTTVKEMLRHIFTQVEAANNAEQS 158

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T+ ++    +N    P        L          + + A+  G   +    +K      
Sbjct: 159 TTLVTRGNLNNDFGVP-----MMLLELEQQHRYAVLELGANHVGEIAYTTAMVKPDVACI 213

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+     +      K  +++ L  + S A++  DD Y++++   A      V+ 
Sbjct: 214 LNIGTAHLGEFGGRDNIAKTKAEIYQSLT-ESSTAVVPFDDDYTQQLTAVAKQHTPHVIH 272

Query: 270 VGYQGKFIHLKKVCA----------------IHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            G+Q    +  K  +                   K    +  +    D   P+ GE  V 
Sbjct: 273 YGWQHLQHNSDKADSSQPQVYATEVQTTALQSCFKLHFDLDSQTSVVDITLPMSGEHNVS 332

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NAL AA    A GI   ++   L +     GR            I  D Y    NS+   
Sbjct: 333 NALAAAACAYASGIAPEVIAAGLNQATSSKGRLGRQTLGMH--HIIDDTYNANPNSMRAA 390

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +    +G  ++V G  G+          K+   +A+ AI
Sbjct: 391 ADVLAA-QAGYKVLVLGDIGELGDASSEEHYKLGQAIANKAI 431


>gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 454

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 157/415 (37%), Gaps = 54/415 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      +  E+   +        + +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKL------NLHEIAKVVGAKNTISDFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A                    P ++VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSEREVE----------GHPYILVDDCLEAFQALASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         +     T  ++         + I L     ++ 
Sbjct: 104 AVTGSNGKTTTKDMIAAVLST------EYKTYKTQGNY--------NNEIGLPYTALHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + K   G  T +G  H+++  +++     K+++ +  
Sbjct: 150 DDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAKGKLQIVDG- 208

Query: 238 LPKESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +   I   D   D Y  E           V+  G  G  I +K +    +K  +T +
Sbjct: 209 MDSDGILIAPVDSIVDPYLPE--------SQMVIRFG-DGAEIFVKDLQ--ESKDSLTFT 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    + 
Sbjct: 258 TNVIDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNRTEW-KKAAN 316

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKI 405
           G  I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++
Sbjct: 317 GADILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRM 371


>gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
 gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
          Length = 453

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTTEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAPLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
 gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
          Length = 454

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 167/450 (37%), Gaps = 37/450 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             E  I+ VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V     +     
Sbjct: 19  GDELLIDAVSTDTRTIERGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRLDV----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P +VV +T+  L  FAS ++       +A+TG+ GK++V   V  I Q  G   
Sbjct: 74  ----NVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F      T  +F  D  +           L          + + A+  G   +    +K 
Sbjct: 130 F------TAGNFNNDIGVP-------LTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L      AI+  D     +  +   +  
Sbjct: 177 DIALVNNVAAAHLEGFGSIDGVKQAKGEIYQGL-SAGGIAIVNLDSNGEAKWDEVLADKK 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               S            +      +    + I+   ++ +    + G+  V NA+ A+ +
Sbjct: 236 VITFSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAIAASII 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +G     V   L+ L+ V GR E    + +   I   Y  +  +++  +  +     
Sbjct: 296 ALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSYNASVPAMKAAVDLLAAFPG 355

Query: 382 GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R +++       ++     R +    A    +  +    +       K+ +++  GI  
Sbjct: 356 QRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD------AKVISDLCQGI-H 408

Query: 439 FIEKGNRIEAIRTAIEMLNK-QDVLVVAGK 467
           F      IE I+  ++        ++V G 
Sbjct: 409 FETHQEMIEYIKQHLDQAVPENHTILVKGA 438


>gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
          Length = 454

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 164/440 (37%), Gaps = 55/440 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKLT------LHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A                    P ++VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSERKVE----------GHPYILVDDCLQAFQELASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         +     T  ++         + I L     ++ 
Sbjct: 104 AVTGSNGKTTTKDMIAAVLST------EYKTYKTQGNY--------NNEIGLPYTALHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + K   G  T +G  H+++  ++      K+++ +  
Sbjct: 150 DDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSRDKIAKGKLQIVDG- 208

Query: 238 LPKESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +   I  AD   D Y  E        G  V+  G   +   +       +K  +T +
Sbjct: 209 MDSDGILIAPADSIVDPYLPE--------GQMVIRFGDGAE---ISVNDLQESKDSLTFT 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    + 
Sbjct: 258 TNVINRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNRTEW-KKAAN 316

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           G  I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++ + L+
Sbjct: 317 GADILSDVYNANPTAMRLILETFSKIPANSGGKKIAVLADMKELGEQSVELHKRMIMSLS 376

Query: 411 DIAIVTDDNPRSEDPEKIRA 430
              + T      ED  ++  
Sbjct: 377 PDVLDTLIF-YGEDIAELAQ 395


>gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
 gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
          Length = 455

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 147/374 (39%), Gaps = 23/374 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +   + VS+D+R + AG +FVA+ G   D H F+ +   +G  A+V       +++    
Sbjct: 20  DASFDGVSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGVAAVVAER--IPENYP--- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L+V +TR  L   A          ++ VTG++GK++V   +  I + +     +
Sbjct: 75  ---LPALIVADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEMIATIFKTA---FGE 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
            G  +T  +F  D        I +   +  ++      V     +H G   +  D  +  
Sbjct: 129 DGRLATSGNFNND--------IGVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIAQPT 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G   N  R+H ++ QT  A       +   L P+   A+  AD+ YS    + A     
Sbjct: 181 VGLVNNAQREHQEFMQTVLAVAEENGTVIRSL-PENGTAVFPADEPYSDLWTRYAGARQI 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R   +G   K     K         V I  EGK +       G+  V NAL AA    + 
Sbjct: 240 RTFGLGKDAKVSGQYKNE--DGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAACARSA 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GID   +++ LE    V GR E     +    I   Y    +S+   +  +  ++   I 
Sbjct: 298 GIDWQTIVKGLEAFSPVHGRLEKKNAFNGALLIDDTYNANPDSVRAAIDVLAELSGKGIF 357

Query: 386 VVFGCGGDRDQGKR 399
           V+   G   + G+R
Sbjct: 358 VLGDMGEVGNDGER 371


>gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 454

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 88/492 (17%), Positives = 194/492 (39%), Gaps = 58/492 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 4   MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNMKEGNLFVPIIRVK-DGHDYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD T   L   A     +    ++ +
Sbjct: 57  KEAMDNGAVASLWKKSYG------TPPKGVPIIFVDETLFALQQLAQFYRREINVKVIGI 110

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++V   ++ I        +  G  + QIG   TI    ++              
Sbjct: 111 TGSNGKTTVKDIIESILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILE------- 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +  S  G  ++     +      T +G+ H++   +++    AK+ +
Sbjct: 164 -------------MGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEI 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + L  +    +   D+     + +    +     + G +     L       ++  V  
Sbjct: 211 IDGL-RENGLFLYNGDEPL---LSRNNKTSSVNCKTFG-EKDTNDLFPTNVQLDEYGVHF 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +      +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+ T  
Sbjct: 266 KLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFYKVPTEKIQEALQQINITQMRFQFL-TAK 324

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALD 408
           +G  I  D +  + +S++  ++ ++ +    + I+V G   +   + +     +GK+  +
Sbjct: 325 KGFTIINDAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNE 384

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                + T      E  + +  E      I       N+ E     ++++ K+DV+++ G
Sbjct: 385 ENIQYVFT----YGELAKFVAEEARKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLLKG 440

Query: 467 -KGHETVHIVTN 477
            +G     IV  
Sbjct: 441 SRGIALEEIVQK 452


>gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 449

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 140/388 (36%), Gaps = 31/388 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  +  V  DSR I+   +FV + G + DGH F  QA   GA A + S        +  
Sbjct: 18  NETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHP------TIQ 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 ++ V +T K     A     K    I+A+TG++GK++    V  +  +   +  
Sbjct: 71  PPQGILVIPVKDTVKAFQQLARAYKEKLAPKIIAITGSNGKTTTKDMVDAVMAQKYQTYK 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +                  L                +     G  +      +  
Sbjct: 131 TQGNHNNELGVPLTILHAPEDTQVLILE-------------MGMDHAGEIEVLSRLAEPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A + T +G  HI+   +++    AKM +   L  K+   +I  D+      +    N   
Sbjct: 178 AAAITLIGEAHIENLGSREGIAKAKMEITAGL-KKDGFFMIPVDEPLLDPFV---PNLTQ 233

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            + + G       L+      ++ Q   +V G  F    P+ G + V NAL+A GL    
Sbjct: 234 TIETFGLTEGD--LQGDIVEESQDQTIFTVAGTTF--TLPVLGGYNVKNALIAIGLGRHF 289

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGR 383
           G+ +  + E L    +   R ++V T   G  I  D Y     ++ ++L + R +   GR
Sbjct: 290 GVSNEAIKEGLAHFQLTKNRTQWV-TAGNGAAILSDIYNANPTAMGLVLDSFRKLPLEGR 348

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            I V     +       +  ++A  L D
Sbjct: 349 RIAVLADMLELGPDSAQMHEQMAAHLDD 376


>gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 448

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 170/459 (37%), Gaps = 63/459 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L+        E+   ++     +  +  +   S +S++I+   +F+ + G++ DGH F
Sbjct: 1   MNLR------LSEIATAINGELRNFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118
           I +A+  GA + +    +             P + V++T   L   A  +  K     ++
Sbjct: 55  IKEALQNGAISFISQKDFD--------DLKVPYVKVEDTLLALQSLACYVRRKLNHLKVV 106

Query: 119 AVTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            VTG+ GK+S   ++  +        +  G  +  IG   +I +  +D +          
Sbjct: 107 GVTGSVGKTSTKEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQ---------- 156

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                     V    +  S+ G         K   G  TN+G  HI+  +++   F AK 
Sbjct: 157 ----------VAVFEMGMSNFGEISKLSQIAKPDIGVITNIGIAHIENLKSRYNIFLAKS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            + +  +P+    II  D+       K       +V+++G + +     +    H     
Sbjct: 207 EIQDG-MPESGILIINNDNDILNLHKKELKR---KVVTIGIENESNFRAQNVQRHQNG-- 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             S E   + +         +YN+L A  +   +G+D  L+ E + +   +  RFE +  
Sbjct: 261 -FSFEVGGYTYFIESFNFHDIYNSLFAIAVGTILGVDRELIKEAIRQKERLKRRFEVIKK 319

Query: 352 NSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIAL 407
            S    I  D Y  +++S+   + +I      +I+V   +   G   ++  + +   I  
Sbjct: 320 GS--ITIVDDTYNASTHSMLSAIDSICEFDGKKILVLGDMLELGEFSEEEHKKVGRYILQ 377

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444
              D+ I T  +        I  E+    G   +    +
Sbjct: 378 KPIDVVICTGKDAFY-----IFDEVKKKDGTKAYFVTKD 411


>gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
 gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
          Length = 481

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 82/424 (19%), Positives = 158/424 (37%), Gaps = 30/424 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D ++     ++  +   P       +  +S DSR ++ G  F AI G + DGH F   
Sbjct: 6   LSDWLWTSDA-MVEVMEGRPFGNLPAGVTGISIDSRALKPGEAFFAIKGEQFDGHDFATA 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA  +VV+         A   +  P++VV++  + L         +    I+AVTG
Sbjct: 65  AMAAGAGLLVVAEHR----LPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    ++ +    G                  +  +  +   +   L+ + +   
Sbjct: 121 SVGKTTTKEALRHVLSDVGKVHA--------------SAASFNNHWGVPLTLARMPADVD 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  + HG  +  +  ++      T +   H+ +    +    AK  +FE ++P  
Sbjct: 167 YGVFEIGMNHHGEIRPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVP-G 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
             A++  DD   +++ + A  AG   + + G   +    L+ V        +T+ +   +
Sbjct: 226 GYALLNRDDKRFRQLQELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHE 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRI 358
                 +PG   V N L   G    +G D A V+  +  L    GR    V  +  G   
Sbjct: 286 AAVKVGIPGRHVVQNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFT 345

Query: 359 YVD--YAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   L      +   + GR I V G   +  +    +   +A  + D 
Sbjct: 346 LIDESYNANPTSMRAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSCKLHADLARPIVDA 405

Query: 413 AIVT 416
            + T
Sbjct: 406 EVNT 409


>gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae T3T1]
          Length = 456

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 149/406 (36%), Gaps = 29/406 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   +++N       Q     +  +++D+R   +  +F A+ G   D H ++ +A+ 
Sbjct: 4   LTTQQLAQILNADLTGDEQA---VVENINTDTRRSVSNSLFFALKGEHFDAHQYLDKAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV  A             TP LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGAAALVVQQA--------NTEIATPQLVVADTRLALGQLAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQR-SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++V      I Q+ +G     +      ++                  L          
Sbjct: 113 KTTVKEMTASILQQTAGNPEAVLFTNGNFNN----------DIGVPLTLLRLTEQHKFAV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +     +  A    N+   H++   + +    AK  ++  L  +   A
Sbjct: 163 IELGANHQGEIDYTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLT-QNGVA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II ++  Y +   K   +   +     + G+    + V    N    T+       +   
Sbjct: 222 IINSEHNYIELWQKEIGSHAIQY----FNGRDYKAENVKHSPNGSTFTLVSPKGSIEINL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  GE  V NAL A  L + +G   A V   LE    V GR   +  N     +   Y  
Sbjct: 278 PYLGEHNVKNALAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNENLLLLDDTYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALD 408
             +SL+  +  ++   + RI++V       +        +G+ A  
Sbjct: 338 NVDSLQAAIDVLKGYDAFRILLVGDMKELGEDSLKCHQQVGEHAKQ 383


>gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
 gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
          Length = 453

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAPLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
 gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
          Length = 453

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 72/464 (15%), Positives = 175/464 (37%), Gaps = 37/464 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + KD  +++N   +      + +I  ++ DSR ++ G +F+  +G   DGH +I  A  +
Sbjct: 4   LVKDLEKILNAKKVNITS--DTEITGIAIDSRKVKQGDLFIPFLGENVDGHNYIESAFEK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A     + SL+D      S+  I+ V+++ + +   A           +A+TG++GK
Sbjct: 62  GAAA-----SLSLKD---DFVSSNNIIYVNDSYEAIQTLAKHYLDSLNAKTIAITGSNGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +         +     T  +F  +  +           L+      +  + 
Sbjct: 114 TTTKDIITSVLST------KYKVHKTQGNFNNELGVP-------LTILAAPEDSEILVLE 160

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A   G        ++      TN+G  HI++ ++++    AK  +    + K+   + 
Sbjct: 161 MGADGFGQLDFLSKLVEPNYTVITNIGESHIEFFKSREGIAKAKFEI-TNGMKKDGYFVY 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+   K ++    ++     S G +  +  +        + ++   +   D  +   L
Sbjct: 220 NGDEVLLKSLVD---SSDFNTTSCG-ENNYNDIILENYTITRDRIDFKLNISDEQYFTKL 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK-LHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G+  ++N + A  +   IG+ +  + + +E  + +   R + +        I   Y  +
Sbjct: 276 KGKHNLFNIMFATAIASKIGLTNEEIRKAIENTVEITGMRLQSIPYKEDSLIINDAYNAS 335

Query: 366 SNSLEMILKNIRTITS---GRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             S++  +  + +        +++  +F  G +       +   I+    DI +V     
Sbjct: 336 PTSMKAGVDVVSSFDDFDFKTLVLGSMFELGPNEVNYHAEVGEYISNKTNDINLVISV-- 393

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E  E I  +I +     +      E         +K +V+++
Sbjct: 394 -GELAENITKQIKNDKIKTLHFPTTAEVSEYLKNNKHKNEVILL 436


>gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 456

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 85/406 (20%), Positives = 149/406 (36%), Gaps = 29/406 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   +++N   I   Q     +  +++D+R      +F A+ G   D H ++ +A+ 
Sbjct: 4   LTTQQLAQILNANLIGDGQA---VVENINTDTRKAVFNSLFFALKGEHFDAHQYLDKAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV  A            +TP LVV +TR  L   A  L  K    I+A+TG+SG
Sbjct: 61  QGATALVVQKA--------NTNISTPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSG 112

Query: 126 KSSVASFVQQICQR-SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++V      I Q+ +G     +      ++                  L          
Sbjct: 113 KTTVKEMTASILQQTAGNPEAVLFTNGNFNN----------DIGVPLTLLRLTEQHKFAV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +     +  A    N+   H++   + +    AK  ++  L P    A
Sbjct: 163 IELGANHQGEIDYTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTP-NGMA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II ++  Y +   K   +   +     + G     + V    N     +       +   
Sbjct: 222 IINSEHNYIELWQKEIGSHAIQY----FNGGDYKAENVEHSPNGSTFMLVSPKGSIEINL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  GE  V NAL A  L + +G   A V   LE    V GR   +  N     +   Y  
Sbjct: 278 PYLGEHNVKNALAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNENLLLLDDTYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALD 408
             +SL+  +  ++   + RI++V       +        +G+ A  
Sbjct: 338 NVDSLQAAIDVLKGYDAFRILLVGDMKELGEDSLKCHQQVGEHAKQ 383


>gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 460

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 86/492 (17%), Positives = 194/492 (39%), Gaps = 58/492 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E++N   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVVNGEGLQ-ESFHLIEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++V   +  I        +  G  + QIG   TI    ++              
Sbjct: 117 TGSNGKTTVKDIIGSILSSTYKVHKTKGNFNSQIGLPLTILEMERNTEFLILE------- 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +  S  G  ++     +      T +G+ H++   +++    AK+ +
Sbjct: 170 -------------MGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + L  +    +   D+     + +    +     + G +     L       ++  V  
Sbjct: 217 IDWL-RENGLFLYNGDEPL---LSRNNKTSSVNCKTFG-EKDTNDLFPTNVQLDEYGVHF 271

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +      +  PL G+  ++N +V   +     +    + E L+++++   RF+F+   +
Sbjct: 272 KLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITKMRFQFLTAKT 331

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
               I   +  + +S++  ++ ++ +     ++IV+        + +     +GK+  + 
Sbjct: 332 GFTIINDAWNASPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEE 391

Query: 410 ADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG 466
           +   + T       +  KI AE    +   G I+  +    I    ++++ K+DV+++ G
Sbjct: 392 SIQYVFT-----YGELAKIVAEEARKNYHTGKIKSFDNKAEIAEEVLKVITKKDVVLLKG 446

Query: 467 -KGHETVHIVTN 477
            +G     IV N
Sbjct: 447 SRGMALEEIVQN 458


>gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 460

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 81/484 (16%), Positives = 183/484 (37%), Gaps = 41/484 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L      E++N   +    +   ++  V  DS+ I  G +FV I+  K DGH ++ +
Sbjct: 7   LIQLQLNKLEEIVNGEGLQ-ESFHYIEMQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKE 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA A +   +Y             PI+ VD+T   L   A          ++ +TG
Sbjct: 65  AMEKGAAASLWKKSYG------DPPKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITG 118

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+ V   +  I   +       G  ++                +L            
Sbjct: 119 SNGKTMVKDIISTILSTTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILE--------- 169

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +  S  G  ++     +      T +G+ H++   +++    AK  + + L     
Sbjct: 170 ----MGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGL-NDGG 224

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFD 301
             +   D+    + +         +    + GK+   L       ++  V   +      
Sbjct: 225 LFLYNGDEPLLSQNINMLG-----IEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQ 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  PL G+  ++N +V   +     +    + E L+++++   RF+F+   +    I   
Sbjct: 280 YDVPLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDA 339

Query: 362 YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTD 417
           +  + +S++  ++ ++ +    + I+V G   +   + +     +G++  + +   + T 
Sbjct: 340 WNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFT- 398

Query: 418 DNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG-KGHETVH 473
                 +  KI AE    +   G I+  +    I    ++++ K+DV+++ G +G     
Sbjct: 399 ----YGELAKIVAEEARKNYHTGKIKSFDNKAKIAEEVLKVITKKDVVLLKGSRGMALEE 454

Query: 474 IVTN 477
           IV N
Sbjct: 455 IVQN 458


>gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 472

 Score =  202 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 161/476 (33%), Gaps = 47/476 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   P    +    +   V  DSR ++ G +F A  G + DGH +  +
Sbjct: 1   MIALSLAEIAGIVGGQPHDVPDLSATVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAER 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++ +                P +VVD+    L   A     +    ++A+TG
Sbjct: 61  AVEAGAVAVLAARPV-----------GVPAIVVDDVVAALGALARAAVERLGTTVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + QI +R   + +  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQILERKAPTVWTPGSLNNEIGLPLTALRATAETRHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++         G   N+G  HI    +++A   AK  L E +LP++ 
Sbjct: 158 -VLEMGARGIGHIEYLAGLTPPRIGLVLNVGSAHIGEFGSREAIAQAKGELVE-VLPEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDF 300
            A++ ADD   + +  R      RV+  G         +   + +  +    +       
Sbjct: 216 AAVLNADDPLVRAMASRTK---ARVILFGEAPDADVRGENVRLTDDGRPAFALHTPTGCS 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    L GE  V NAL AA +   +G+    + + L     +      V     G  +  
Sbjct: 273 DVTLRLYGEHHVSNALAAAAVAHELGMSVTEIADALSGAGTLSRWRMEVTERPDGVTVVN 332

Query: 361 D-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGGDRDQGKRPIMGKIA-----LD 408
           D Y     S++  L+ +  +        GR   V G   +           +      L+
Sbjct: 333 DAYNANPESMKAALRALAAMGKARQAAGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLN 392

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +  V                        +   +   A+      L   DV++V
Sbjct: 393 VSKLVAVGGQEASWLQLGAYNEG--SWGEESVHVSDAQAAVDLLRSELRPGDVVLV 446


>gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 258

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 28/246 (11%)

Query: 1   MKLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG--- 56
           MKL++L       E I  ++I        +I  +  DSR I +G +F+ + G   DG   
Sbjct: 1   MKLKELANLLMIKETIGDMNI--------EITGLEMDSRKITSGDLFICVSGI--DGFLE 50

Query: 57  --HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
             H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG   
Sbjct: 51  DRHQFVEDAVKNGAVALIVERDINIE---------IPKIIVKDARYAMAVIASHFYGYPS 101

Query: 115 --ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171
               ++ +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L 
Sbjct: 102 NKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQGPPTLQ 161

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + L  + +Q   +  +E +S GL   R+         FTNL +DH+DYH T   Y + K 
Sbjct: 162 RNLQMMKNQNADYCVMEVTSQGLHMERVKECNFKIAVFTNLTQDHLDYHGTFDEYKHVKS 221

Query: 232 RLFEEL 237
            LF  L
Sbjct: 222 LLFARL 227


>gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           chlorochromatii CaD3]
 gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 476

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 155/462 (33%), Gaps = 36/462 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V  DSR +  G +FVA+ G + DGH ++      GA   +V+ ++   +       +  
Sbjct: 32  HVVIDSREVSEGGLFVALHGERTDGHRYVNDVFQHGATWAMVNRSWYEAEGHPLPPHHKG 91

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--------RSGLS 143
            LVV++T   L   A R        I+A+ G++GK++    V  +            G  
Sbjct: 92  FLVVEDTVAGLQHLAVRYRNTFSIPIVAIGGSNGKTTTKEMVAAVLASDSSAVSMSQGNR 151

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  +G   T+                       +   G+ H +  A          + + 
Sbjct: 152 NNHLGVPLTLLQMRHSTE-------------RAVVEVGINHPNEMAM-------LAELVA 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+G +H+++         A+ +L++      + A I ADD   +   +     
Sbjct: 192 PTHLLLTNIGHEHLEFLGDLDGVAKAETQLYDYARQHGATAFINADDERLRAAAEGMPFR 251

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGL 321
               L                   +    +  +G+           G   V NA+ AA +
Sbjct: 252 IDYSLHEAVDSLVWAEDVTVERDGRLSFLLVTKGRSEQERLRLHFTGRHNVLNAVAAATV 311

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379
            +  GI    + E L  L   PG          G R+  D Y   S+S+   +  +  + 
Sbjct: 312 GLQFGISLHHICEGLAGLQPAPGWKRLEVVEVGGVRLLNDTYNANSDSMRRAIDALCDMP 371

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +GR I V G   +           +A      ++VT           I         G 
Sbjct: 372 CNGRRIAVVGDMLELGDAAEVEHQAVA-HYIQRSLVTKLFTFGTQAAAICRHAPELCYGS 430

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVTNGEK 480
             + + +  +   + +L++ DV++V G +G     IV     
Sbjct: 431 YSEHSAL--LDDLLHVLSEGDVVLVKGSRGMRLELIVDGVVH 470


>gi|66047333|ref|YP_237174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258040|gb|AAY39136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 456

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 98/471 (20%), Positives = 161/471 (34%), Gaps = 47/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F EL+  L    +   +     VS+DSR I+ G +FVA+ G + DGH ++ Q  A
Sbjct: 2   LKPMTFRELVVPLDARLVGG-DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA   +V              +  P LVV +TRK L+   +          + AVTG+S
Sbjct: 61  KGAVGALVEREVQG--------AALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSS 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I +  G      G  +                      L          
Sbjct: 113 GKTTVKEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + AS  G   + +   K      TN G  H+           AK  + E L      A
Sbjct: 160 IELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGL-DAGGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++  +D       KRA N      ++      ++  ++           ++         
Sbjct: 219 VLNLEDKAFPIWRKRAGNRNILTFALTDSAADVYASELSRDARGCPAFNLNSPLGTARVQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             L G   V NAL AA    A+G+    ++  L  +  V GR       S G R+  D Y
Sbjct: 279 LNLLGTHNVSNALAAAAAGCAMGVPLEGIVTGLNNVQPVKGRA-VAQIASNGTRVIDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDN 419
                S+   +  +   T   ++V+   G   D   QG R +    A  ++ +  V    
Sbjct: 338 NANPASINAAVDILTGFTGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAVGP-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                       + H +  F E      ++ E I       +    L++ G
Sbjct: 396 -----------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPDTTLLIKG 435


>gi|218184973|gb|EEC67400.1| hypothetical protein OsI_34565 [Oryza sativa Indica Group]
          Length = 889

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 93/439 (21%), Positives = 194/439 (44%), Gaps = 32/439 (7%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+     ++  +  V  D+  + AG ++V + G +  G   + +A  +G
Sbjct: 227 LAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKRG 283

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A A+V      ++   A       +++VD+    L +  + LY +  ++  ++ V GT G
Sbjct: 284 AVAVVADQTVDIEGTLA----CRALVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDG 339

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            ++ A  V+ + +  G+ +  +G     +   +        +  PI + + ++ +   G 
Sbjct: 340 VTTTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNGA 399

Query: 183 THVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240
               +E ++ G+    +D  I       TN+     +   T + Y N+   LF  ++ P+
Sbjct: 400 EAALLEVTTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDPE 459

Query: 241 ESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               ++  DD  +     +   +      S   +   +H  K      + +V +      
Sbjct: 460 RHRKVVNIDDPSAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGI 519

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G   +YN L +  + +A+G     +++ +E++  +PGR E +      G + 
Sbjct: 520 LEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFG-VI 578

Query: 360 VDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGKIA 406
           VD+A T  SL  +L  ++ +   RI+             VV GC G+R++GKRP+M K+A
Sbjct: 579 VDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTKVA 638

Query: 407 LDLADIAIVTDDNPRSEDP 425
            + +D+ ++T DNP +EDP
Sbjct: 639 AEKSDVVMLTSDNPANEDP 657


>gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
 gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
          Length = 463

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 157/455 (34%), Gaps = 47/455 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + ++N +S D+R I+ G +FVA+   + DGH F+ QA+ +GA A +VS           
Sbjct: 19  SDWQVNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQALEKGAGAALVS------HIPEG 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  + P+L+V++ +  L         +    ++AVTG+ GK+S    +  +    G +  
Sbjct: 72  VAEDAPLLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLTPQGRTHA 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKL 204
            +               +  +   +   L+ + +     V     +H G         + 
Sbjct: 132 AV--------------ASYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEIAPLSRQARP 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +   H++  +        K  + E L P    A++ AD   +  +   A +AG
Sbjct: 178 HVALVTTVAAVHLEAFEDVAGIAREKAAIIEGLEP-GGIAVLNADLEETPVLRDVAQDAG 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                 G       L++     +  +  I    ++F       G     NA  A     A
Sbjct: 237 VATRWFGQTSDDYCLQEAQLSGDVTRARIVQAEREFSAEIQSLGVHFAMNATGALAAIEA 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT- 380
           +G D  L L  L+    V GR     VG  S    +  D Y     S+   L  +     
Sbjct: 297 LGADLELALAGLQGWSPVKGRGARFTVGLPSGPVTVLDDAYNANPTSIGAALTVLAATPT 356

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI--RAEIIHGIPG 438
            GR I       +    +  +   +A           D+P     + +     ++  +  
Sbjct: 357 EGRRIAYLADMKELGPEEARLHAGLA-----------DHPALAKIDAVHCIGPLMKHLYA 405

Query: 439 FIEKGNR-------IEAIRTAIEMLNKQDVLVVAG 466
            + +  R        EA       +   DV++  G
Sbjct: 406 ALPENKRGTWVETSAEAASALPAQIQGGDVVLAKG 440


>gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
 gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
          Length = 473

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 133/376 (35%), Gaps = 18/376 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           V  DSR +Q G IFVA+ G + DGH +I    A+GA   VVS A+          +    
Sbjct: 33  VVIDSREVQEGGIFVALEGERTDGHRYIDDVFAKGASLAVVSEAWYASHGQKDGAAGRRS 92

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+VD+T + L   A          + AV G++GK++    +  +               
Sbjct: 93  YLIVDDTVRGLQQMAVAYRRSFSIPVFAVGGSNGKTTTKELIASVL-------------- 138

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSFT 210
            +      +R    + + +   L  +       V     +H  +   L  I     G  T
Sbjct: 139 GVGFKVHMSRGNRNNHLGVPLTLLQMKRDTEIAVVEMGINHPGEMELLASIAMPTHGLLT 198

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G +H+++    Q    A+ RL+E L        + ADD +      +   A    L+ 
Sbjct: 199 NIGHEHLEFLHDLQGVAAAETRLYEYLDGHGGVCFVNADDPWLLSAASKLERAVLYGLNG 258

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +G             +    + +          L G   V NAL AA     +G+   
Sbjct: 259 CGEGVPHAESAALDPFGRPSFMLCLSQACESVTLSLTGRHNVVNALAAAAAGSYLGLSLR 318

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVF 388
            + E LE +    G        + G  I  D Y    +S+ + +  +  +  SGR I V 
Sbjct: 319 EIKEGLENMIPATGWKRLEFQEAGGVMIVNDTYNANPDSMRLAIDLLCDLQCSGRKIAVL 378

Query: 389 GCGGDRDQGKRPIMGK 404
           G   +          K
Sbjct: 379 GDMLELGSSAELEHEK 394


>gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
 gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
          Length = 453

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 154/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+            + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGQVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMTQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKYAKVISDLCQG 404


>gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 453

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTTEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
 gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
          Length = 447

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 165/448 (36%), Gaps = 46/448 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  V  DSR + AG +FV + G + DGH FI QAIA GA A   S             
Sbjct: 19  RIVTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIASGAIATFWS--------VQDQP 69

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  ++ V +  + +   A+         ++A+TG++GK++       +  ++  +    
Sbjct: 70  EDITVIQVTDCLEAMQKLATYYRELLAPKVVAITGSNGKTTTKDLTASVLSQAFRTYKTQ 129

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
           G                 + I L   + ++       V      H  D   L  I +   
Sbjct: 130 G--------------NYNNEIGLPYTILHMPKDTKVVVLEMGMDHAGDLTTLSTIARPDI 175

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            + T +G  HI+   ++      KM +   L   +   II  D+     ++        +
Sbjct: 176 AAITMIGEAHIENLGSRAKIAQGKMEIATAL-AADGCLIIPCDEPLLAPLV---QGMTQQ 231

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V++ G     +    +     +   ++    K+ D+  PL G + V NAL+A  +    G
Sbjct: 232 VVTFGIDAGDVAAHILEEHAEQTVFSV----KEQDYRIPLLGTYNVKNALIAYSIGEKFG 287

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRI 384
           +    +   L+ + V   R +++     G R+  D Y     ++ ++L +   +   GR 
Sbjct: 288 VTPEQIANGLKNVQVTKNRTQWLEME-NGTRLLSDVYNANPTAMGLVLDSFGKLPVQGRR 346

Query: 385 IVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGF 439
             V     +       +   +A  +   D   +       E  + +  E+      +P  
Sbjct: 347 FAVLADMLELGPESSVMHAAMADHVQNYDGLFL-----VGEQMDYLAKELAARDSDVPLE 401

Query: 440 IEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           +   N + A I    ++L   D+L++ G
Sbjct: 402 LYDANELAALIEDLKQLLQPADMLLLKG 429


>gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 437

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 146/397 (36%), Gaps = 24/397 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I   +   +   +  I+ V +D+R + +G ++VA+ G + DGH F   A+A+GA  ++V
Sbjct: 1   MIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLV 60

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                            P +VV NT   L+  A+ +       ++A+TG++GK+SV + +
Sbjct: 61  DRLLPALH--------VPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALL 112

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I   +G             +   +              ++      +    + A   G
Sbjct: 113 LAILAEAGRVDGI--------TAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPG 164

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +  D  +       N+   H++   +       K  ++  L P +  A+I ADDA+ 
Sbjct: 165 DIAYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTAL-PADGVAVINADDAFG 223

Query: 254 KEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               ++         RVL  G      I  +++       Q  ++    +   + PLPG 
Sbjct: 224 AWFEQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGR 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL A GL +  GI   ++   L +   V GR +   T + G  +  D Y     S
Sbjct: 284 HNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR-QIAHTLATGAVLIDDSYNANPGS 342

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                 +      G   +V G   +       +    
Sbjct: 343 -LDAAIDALAAAPGEGWLVLGDMRELGPEAPALHAAA 378


>gi|171742535|ref|ZP_02918342.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283456379|ref|YP_003360943.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278149|gb|EDT45810.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283103013|gb|ADB10119.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 521

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/508 (24%), Positives = 203/508 (39%), Gaps = 52/508 (10%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIA----QGAEAIV 72
           L    +      +  ++ D+R ++ G  +FV   G       F P+ +     +G  A V
Sbjct: 34  LDASDLPGANEPVGSITYDTRKVEPGSMLFV--KG------RFKPEFLDGIDGKGLAAYV 85

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--- 129
             + Y+  D +  I      ++V++  K +SL ++  YG  P+N L V G +G       
Sbjct: 86  AETEYA--DRTKAIG-----IIVEDVHKAMSLLSAAFYG-MPQNELTVIGITGTKGKTTT 137

Query: 130 ASFVQQICQ---RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           A     I         + F              ++LTTP  +   + +   +  G+ ++ 
Sbjct: 138 AYLAHAILNEYSHGRCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLV 197

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS     +R+ G+    G+F N+  DHI    H T + YF  K RL           
Sbjct: 198 MEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRRLIAN----SRSL 253

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEGK 298
           ++ AD  +   +M+ A +AG +V           L             NK    +SV G 
Sbjct: 254 VLGADCNHRDLLMQDAADAGVKVTEFALHDAARGLTSPAQVIARVDPENKAGFIVSVNGS 313

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           D       + GEF V NA  A  + I  G+  +           VPGR E V     G  
Sbjct: 314 DLRPMELDMSGEFNVTNAAAAVAIAIEAGVPESDPSIAAMCRVQVPGRMERVKA-GDGLL 372

Query: 358 IYVDYAHTSNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +Y+D+AH   S++ ++  +         RI +V G  G +   +R  + K AL   +  I
Sbjct: 373 VYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGIVKGALGRVESFI 432

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAI----EMLNKQDVLVVAG 466
            T D+P  EDP  I  ++   +     +      R  AI  AI    E  ++ ++++V G
Sbjct: 433 FTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVPRELAIEKAIADAREHADRFNIVLVIG 492

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG ET +I+         D  ++R +LG
Sbjct: 493 KGDETRNIINGKPVPYEGDGAVVRRVLG 520


>gi|306822448|ref|ZP_07455826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553993|gb|EFM41902.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 521

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/508 (24%), Positives = 203/508 (39%), Gaps = 52/508 (10%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIA----QGAEAIV 72
           L    +      +  ++ D+R ++ G  +FV   G       F P+ +     +G  A V
Sbjct: 34  LDASDLPGANEPVGSITYDTRKVEPGSMLFV--KG------RFKPEFLDGIDGKGLAAYV 85

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--- 129
             + Y+  D +  I      ++V++  K +SL ++  YG  P+N L V G +G       
Sbjct: 86  AETEYA--DRTKAIG-----IIVEDVHKAMSLLSAAFYG-MPQNELTVIGITGTKGKTTT 137

Query: 130 ASFVQQICQ---RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           A     I         + F              ++LTTP  +   + +   +  G+ ++ 
Sbjct: 138 AYLAHAILNEYSHGRCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLV 197

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244
           +E SS     +R+ G+    G+F N+  DHI    H T + YF  K RL           
Sbjct: 198 MEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRRLIAN----SRSL 253

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEGK 298
           ++ AD  +   +M+ A +AG +V           L             NK    +SV G 
Sbjct: 254 VLGADCDHRDLLMQDAADAGIKVTEFALHDAARGLTSPAQVIARVDPENKAGFIVSVNGS 313

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           D       + GEF V NA  A  + I  G+  +           VPGR E V     G  
Sbjct: 314 DLRPMELDMSGEFNVTNAAAAVAIAIEAGVPESDPSIAAMCRVQVPGRMERVKA-GDGLL 372

Query: 358 IYVDYAHTSNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +Y+D+AH   S++ ++  +         RI +V G  G +   +R  + K AL   +  I
Sbjct: 373 VYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGIVKGALGRVESFI 432

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAI----EMLNKQDVLVVAG 466
            T D+P  EDP  I  ++   +     +      R  AI  AI    E  ++ ++++V G
Sbjct: 433 FTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVPRELAIEKAIADAREHADRFNIVLVIG 492

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KG ET +I+         D  ++R +LG
Sbjct: 493 KGDETRNIINGKPVPYEGDGAVVRRVLG 520


>gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
 gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
          Length = 457

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 162/458 (35%), Gaps = 31/458 (6%)

Query: 12  PELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            ELI     +      +   + +  DSR      +FV +VG K D H F+      G   
Sbjct: 7   RELIAATGGVLIFGNEDAVFSNIVIDSREANKNSLFVPVVGEKNDAHKFLESVYDAGCRV 66

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            + S            + +  I++V++T K L      L  K    ++ VTG+ GK++  
Sbjct: 67  AISSRKDIFS------KPDFNIVLVEDTIKALQSLGIYLRSKLSLPLVGVTGSVGKTTTR 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                                T ++F         S + +   +S ++ + +  + +  S
Sbjct: 121 EMTALALSDL-------KVFKTPNNF--------NSQLGVPVTISRITDEEIGIIELGMS 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  +     +   +   TN+G  HI+   T++   + K  + +  +   S   + AD+
Sbjct: 166 LFGEMERIAKIVGCDSAIITNIGTAHIENLHTKENIRSEKFHIMDG-MKAGSVVFLNADN 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                  KR         + G      +   +   +   + T  +  +       + GE 
Sbjct: 225 DMLSNPPKREGIIYKFFSAKGNTDCDYYATDIVFHNAMPEFTAHICDRSIKVTLNVFGEH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
           QV NALVA  +     +D     +HL        R E +   +    +  D Y  + +S+
Sbjct: 285 QVSNALVALAVAHHYNLDIESASKHLSSFRGFSHRQELIELKNL--TVIDDTYNASPDSM 342

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  L  ++   + R I V     +    +     ++   +++      D   S    ++ 
Sbjct: 343 KASLSILKDFRARRKIAVLADMKELGADEVKFHREVGEFISENV--KPDAVFS--VGELA 398

Query: 430 AEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG 466
            EI++    F +  +  EA+ +  +E L   DV +  G
Sbjct: 399 REIVNCTDIFGKSFDSNEALEKYLLEYLEDGDVCLFKG 436


>gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
 gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
          Length = 462

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 154/407 (37%), Gaps = 32/407 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +   +F E++    I        K + VS DSR ++   +F AI G + DGH F+     
Sbjct: 6   MTIGEFAEMLGS-DIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQA--- 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
                    +  +    +  +  + P ++V +TR+ L   A +   K    ++AV G++G
Sbjct: 61  ------ASDAGAAAAVVTHFVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    V  I +        +G    +++            + ++  L  L  +     
Sbjct: 115 KTTTTQMVLSIIKERFQEGAWVGTEGNLNN-----------ELGVSLMLWKLRPEHQAAC 163

Query: 186 SVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                +H G  +  +  I    G+ TN  RDH ++  + +        +F +L P++  A
Sbjct: 164 FEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQL-PRQGVA 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I A D ++ E  K A N   RV++ G     ++  +V          +       D   
Sbjct: 223 VINAADPFAVEWRKMAGNN--RVVTFGTPDSDVYACEVE----GTAFRLVTPIGQIDIEL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  + NA+ AA +  A+G D   + + LE    V  R E V  +     I   Y  
Sbjct: 277 KVPGKHNIVNAVNAAAVLFAMGRDLCDIKKGLENFEAVSHRGEVVTLDDGSVVIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
             +S+   +  +      +I V    G    +       +G+     
Sbjct: 337 NPDSMNAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRRC 383


>gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
 gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
          Length = 470

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 129/412 (31%), Gaps = 34/412 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++     + +  +     +     I  V  DSR +  G +FV I G + DGH F 
Sbjct: 3   MTLSDILTAT--KAVGDVG----ERGNPVIEAVRIDSRAVTPGCLFVCIPGERFDGHNFA 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +GA A++     +       +   TP+L+V +T   L   A     +    ++ V
Sbjct: 57  AEAVGKGAAAVLADRPLT------GLPDGTPVLLVRDTVAALGFLAKAWRTQVGARLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V      I  + G +             A++ +            L      
Sbjct: 111 TGSAGKTTVKELTAAILGKLGPT-------------AKNYKNFNNHIGLPLSMLEASDKD 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G  +      +       N+G  H++           K +LF   L  
Sbjct: 158 AYWVMELGISRPGEMEPLAAIAEPDVAVIHNVGPAHLEALGDVAGVAAEKTKLF-NFLRP 216

Query: 241 ESPAIIYADDAYSKE----VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              A+   D     E    V  R      +    G    +           + +  + + 
Sbjct: 217 GGVALASMDYPELWEAALAVFPRVRGLSTKGQGKGRSAPYRAKYLGALPEGRGRFFLKLG 276

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +   PL G     N L AA     +G     +   LE    V     F        
Sbjct: 277 ELEMEVETPLTGGHFAENILAAATSAHILGAGEKQIAAGLET--AVMPEQRFYCRRQGCY 334

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            I  D Y     S+   +        G   +V   G  R+ G         L
Sbjct: 335 TIIDDTYNANPLSMRRAIAAAVETAQG-KPLVLVLGEMREMGAHAEEEHAKL 385


>gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
 gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
          Length = 453

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 158/414 (38%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRELE------ 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++   LVV +T++ +    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 73  ---ADCSQLVVADTKQAIGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +  G   + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDGYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L  + + AI+  D    +       +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGL-REGAVAIVNLDSNGGEHWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V           +     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFILVTPIGEVDVELGIIGQHNVGNALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A V   L  L  V GR +          I   Y  +  +++  +  + + ++ R
Sbjct: 296 EMGASLAEVRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 454

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 83/484 (17%), Positives = 187/484 (38%), Gaps = 42/484 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+++ + +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 4   MNLKKL-----EEVVDGVGLQ-ESFHHIEIHGVCIDSKNIKEGNLFVPIIRVK-DGHGYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A          ++ +
Sbjct: 57  KEAMDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++                +L          
Sbjct: 111 TGSNGKTTVKDIISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILE------- 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  S  G  ++     +      T +G+ H++   +++    AK+ + + L  +
Sbjct: 164 ------MGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSREEISKAKLEIIDGL-KE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E   +   D+     + ++ +       S G +     L       ++  V   +     
Sbjct: 217 EGLLLYNGDETL---LSRKNNVLVLECKSFG-EKDTNDLFPTNVQLDEYGVHFKLNDSKI 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  + N +V   +     + +  + + L ++++   RF+F+   +    I  
Sbjct: 273 QYDVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQFLTAKTGFTIIND 332

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++ +    + I+V G   +     +     +GK+        + T
Sbjct: 333 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKEAETYHREIGKMLNQENISYVFT 392

Query: 417 DDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG-KGHETVH 473
                 E  E +  E       G ++  N    I    ++++ K+DV+++ G +G     
Sbjct: 393 ----YGEMAEIVAEEARKKYDTGKVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEE 448

Query: 474 IVTN 477
           IV N
Sbjct: 449 IVQN 452


>gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 456

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 99/471 (21%), Positives = 160/471 (33%), Gaps = 47/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F EL+  L    +   +     VS+DSR I+ G +FVA+ G + DGH ++ Q  A
Sbjct: 2   LKPMTFSELVVPLDARLVGG-DCSFVGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA   +V                 P LVV +TRK L+   +          + AVTG+S
Sbjct: 61  KGAVGALVEREVQGAVL--------PQLVVLDTRKALAQLGAMNRNAFLDRPVAAVTGSS 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I +  G      G  +                      L          
Sbjct: 113 GKTTVKEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + AS  G   + +   K      TN G  H+           AK  + E L      A
Sbjct: 160 IELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGL-DAGGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++  +D       KRA N      ++      ++  ++           I+         
Sbjct: 219 VLNLEDKAFPIWRKRAGNRNVLTFALSDSAADVYASELSRDARGCPGFIINSPLGTARVQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             L G   V NAL AA    A+G+    ++  L  +  V GR       S G R+  D Y
Sbjct: 279 LNLLGTHNVSNALAAAAAGCAMGVPLEGIVTGLNNVQPVKGRAVAQIV-SNGTRVIDDTY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDN 419
                S+   +  +   T   ++V+   G   D   QG R +    A  ++ +  V    
Sbjct: 338 NANPASINAAVDILTGFTGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAVGP-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                       + H +  F E      ++ E I       +    L++ G
Sbjct: 396 -----------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPDTTLLIKG 435


>gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 454

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/481 (16%), Positives = 182/481 (37%), Gaps = 41/481 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L      E++N   +    +   ++  V  DS+ I  G +FV I+  K DGH ++ +A+ 
Sbjct: 4   LQLNKLEEIVNGEGLQ-ESFHYIEMQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKEAME 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A +   +Y             PI+ VD+T   L   A          ++ +TG++G
Sbjct: 62  KGAAASLWKKSYG------DPPKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V   +  I   +       G  ++                +L               
Sbjct: 116 KTMVKDIISTILSTTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILE------------ 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  S  G  ++     +      T +G+ H++   +++    AK  + + L       +
Sbjct: 164 -MGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGL-NDGGLFL 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLF 304
              D+    + +         +    + GK+   L       ++  V   +      +  
Sbjct: 222 YNGDEPLLSQNINMLG-----IEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDV 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G+  ++N +V   +     +    + E L+++++   RF+F+   +    I   +  
Sbjct: 277 PLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNA 336

Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNP 420
           + +S++  ++ ++ +    + I+V G   +   + +     +G++  + +   + T    
Sbjct: 337 SPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFT---- 392

Query: 421 RSEDPEKIRAEII--HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG-KGHETVHIVT 476
              +  KI AE    +   G I+  +    I    ++++ K+DV+++ G +G     IV 
Sbjct: 393 -YGELAKIVAEEARKNYHTGKIKSFDNKAKIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 451

Query: 477 N 477
           N
Sbjct: 452 N 452


>gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida F1]
 gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas putida F1]
          Length = 455

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 136/408 (33%), Gaps = 28/408 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L   L    +   +     VS DSR + AG +FVA+ G + DGH ++    A+GA A
Sbjct: 7   LSQLTTALKGQHIGG-DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    +  D         P L+V   R  L    +       + ++A+TG+SGK++V 
Sbjct: 66  ALVEREVAGVDL--------PQLLVKGCRVALGQLGALNRAAFDKPVVAITGSSGKTTVK 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +  GL     G  +                      L          + + AS
Sbjct: 118 EMLASILRTRGLVHATRGNLNNDLGAPLT-------------LLEIAPEHSAAVIELGAS 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G  ++ +   +       N G  H+           AK  + E L  +   AI+  DD
Sbjct: 165 RIGEIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGL-GEGGIAILNLDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGE 309
                   RA        +        H   +          T+   G+       + GE
Sbjct: 224 KAFDIWKARAGAHKVVSFARSNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGE 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AA    A+G+  + +   L  +  V GR         G R+  D Y     S
Sbjct: 284 HNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGR-TVAQIAPNGVRVIDDSYNANPTS 342

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAI 414
           +   +  +   +   ++V+   G      +     +G  A    D   
Sbjct: 343 MCAAIDILAGFSGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390


>gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 135/374 (36%), Gaps = 43/374 (11%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  + +   +  +R    +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V 
Sbjct: 14  LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             Y      A       +L VDNT       A     +    ++ +TG+ GK++    + 
Sbjct: 74  RDYQPPSDLAAGH----LLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIA 129

Query: 135 QICQRSG-------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +    G         + +IG   T+     D+                        + +
Sbjct: 130 AMLAVRGPVLKTEANYNNEIGVPKTVLQIDPDHHW-------------------AAVLEM 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                G         +      TN+G  HI    ++QA   AK  L  +L      AI+ 
Sbjct: 171 GMRGRGQIAELARIAQPNIAVITNVGTAHIGLLGSEQAIAEAKCELLAQL-SGTGLAILN 229

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           AD+       +R +   CR  + G Q   +  + +         T+ VEG+ F    PLP
Sbjct: 230 ADNHRLIATAQRLNLPRCR--TYGLQNGDLQGQLIDLE------TLVVEGQRF--RLPLP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L    +   +G+D     +    + +  GR   +  +     +   Y     
Sbjct: 280 GAHNALNFLAGLAIAQELGLDWEAFRDL--SVTLPQGRARRIELSPDIVLLDETYNAGLE 337

Query: 368 SLEMILKNIRTITS 381
           S+   L+       
Sbjct: 338 SMLAALQAFGGYAG 351


>gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 466

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 162/459 (35%), Gaps = 31/459 (6%)

Query: 12  PELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            EL        +   E ++ + +  DSR +    +FV IVG   D H F+      G + 
Sbjct: 14  KELAAATGGELISGNENEVFSNIVIDSRQVDKDSLFVPIVGENNDAHKFLEAVYNSGCKV 73

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            + S           ++ +  I++VD+T K L      +  K    ++ VTG+ GK++  
Sbjct: 74  AISSKK------DIFLKKDFNIVLVDDTTKALQSLGKYIRKKLNLPLVGVTGSVGKTTTR 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V                  T ++F         S + +   LS +  + +  + +  S
Sbjct: 128 EMVALALSDL-------KVFKTPNNF--------NSQVGVPITLSRIKDEEIGVIELGMS 172

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                +     +       TN+G  HI+   T++     K  + +  + + S   + AD+
Sbjct: 173 KFDEMEKIAKIVNCDCALVTNIGTAHIENLFTRENIRTEKFHIMDG-MKENSVVFLNADN 231

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                  KR         + G +    +   +   +   +    +EGK       + GE 
Sbjct: 232 DLLNNSPKREGIIYKFFSAKGNKDCEYYASDIVFNNAMPEFNAHIEGKTLRVHLNVFGEH 291

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
           Q+ NAL A  +     +      +HLE       R E +     G  +  D Y  + +S+
Sbjct: 292 QISNALAALAVADHYNLSIESAAKHLEDFRGFSHRQELII--RGGLTVIDDTYNASPDSM 349

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +  ++   + R I +     +  + ++ +  +I   +     V       E  ++I 
Sbjct: 350 KASISILKGFNAKRKIAILADMKELGEDEKNLHREIGDFINKNVKVDAVFTVGELAKEII 409

Query: 430 AEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + I   +    F +       IR   E L   DV ++ G
Sbjct: 410 SNINENVLTKSFEDNETLENFIR---EYLKDGDVCLLKG 445


>gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 513

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 158/500 (31%), Gaps = 75/500 (15%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q         +       SDSR ++ G +FVAI G + DGH F+ +A   GA   +V
Sbjct: 18  IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 77

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128
                              +VV +T   L L      A+R     P  ++ +TG+ GK++
Sbjct: 78  QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRAAGTPFTLIGITGSVGKTT 128

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +    G +   +G  +                 +                 + 
Sbjct: 129 TKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAE-------------MG 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS  G                  +G  H+    + +    AK  + + L+P +  A++ A
Sbjct: 176 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVP-DGLAVLNA 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--------------- 293
           DDA+   +   A      V   G  G         A   K                    
Sbjct: 235 DDAHVAAMAPLAPQGH--VFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFT 292

Query: 294 --SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               +G        + G   V NAL AA +   +G+    + E L +   +      V T
Sbjct: 293 LERADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVST 352

Query: 352 NSRGG---RIYVD-YAHTSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
             RGG    +  D +    +S+      L   R+      I V G   +    +  +   
Sbjct: 353 VRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEG 412

Query: 405 IALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPG-------------FIEKGNRI 446
           I    A + I     V +D+   E  + + + +  G                ++   ++ 
Sbjct: 413 IGEYAAGLPIDAVIAVGNDD---EHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQA 469

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           + +  A+   +   V+++ G
Sbjct: 470 DTLVRALAGDHDDTVVLLKG 489


>gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
          Length = 464

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 155/405 (38%), Gaps = 24/405 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +    LI   +   +   +  I+ VS+D+R++  G ++VA+ G + DGH F   A A+G
Sbjct: 2   KRTLLSLIAHWAGGEIHGDDVAIDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQARG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V     ++          P ++V ++   L+  A+ +       + A+TG++GK+
Sbjct: 62  ASALLVERLLPIE---------LPQVLVADSELALAKIATGMQRDRDTEVFAITGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SV S +  I Q+    + ++           +              +            +
Sbjct: 113 SVKSLLLSILQQVARHAHKV--------VYANPGNRNNEIGLPLAVIDAPEDADYAVYEM 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A   G   +  D  +       N+   H++   +       K  ++  L P +  A+I 
Sbjct: 165 GAGKPGDIAYLTDIARPRYALVNNIAPAHLERMGSLLGVAVTKGAIYAAL-PADGVAVIN 223

Query: 248 ADDAYSKEVMKR--AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDAY +   +      A CRVL  G +    +  + + A     Q T+     +   + 
Sbjct: 224 VDDAYGRWFEQHFVGTPARCRVLRYGLEHTADVTARDIRAGAQGSQFTLVSPMGEARVVL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V NAL AA L +A GI+ ALV   L     VPGR   +      G + VD ++
Sbjct: 284 GLPGRHNVSNALAAASLALAAGIELALVAAGLADAQPVPGRQ--IAHQLHNGAVLVDDSY 341

Query: 365 TSNSLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +N        +          +V G   +       +  +  L 
Sbjct: 342 NANPGSLAAAIDALAAAPEEGWLVLGDMRELGPDAEALHAQAGLR 386


>gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
 gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
          Length = 468

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 151/413 (36%), Gaps = 36/413 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +   +  +  VS+D+R + A  +F+A+ G + D H F   A+ 
Sbjct: 1   MIEVQLAQLADVLGA-ELIGNDITVANVSTDTRTVSAHTLFIALKGERFDAHDFCQNAMD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVT 121
            GA A++VS    ++          P LVV +T + L L  +     +   H    +A+T
Sbjct: 60  NGAAALLVSRHLPVE---------LPQLVVKDTHQALGLLGAWLKQSMEQDHGLKTIALT 110

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++V     +I  + G         ST  +F  D  +           L   +   
Sbjct: 111 GSCGKTTVKEMAAEILSQKGN------VLSTAGNFNNDIGVP-------LTLLRLTAEHE 157

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--- 238
              + + A+      +  + +K       NL   H++   +      AK  +FE L    
Sbjct: 158 FAVIELGANHQQEIAYTTNLVKPQVALVNNLAAAHLEGFGSLAGVAKAKGEIFEGLTAPL 217

Query: 239 --PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV 295
                S AII  D                +  S+      F           +   T+  
Sbjct: 218 NDSGLSTAIINVDSNDLAMWQPLLAQHAVKTFSLTDIDADFSATDIFINSEGRACFTMRT 277

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D    L G   V NAL AA L + +G     V   LE++  V GR + V     G
Sbjct: 278 SAGTIDITLTLAGIHNVSNALAAAALAMTVGATLEQVKAGLEQVVNVKGRVD-VSHPREG 336

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            R+  D Y  +  S++  +  + + T G+   V G   +  +    +  ++A 
Sbjct: 337 LRLIDDTYNASVASVKAAIDLLASFT-GQRWFVLGDMAELGEESASLHREVAE 388


>gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1059]
          Length = 456

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 101/479 (21%), Positives = 183/479 (38%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A AQGA A +     +              ++VD+        A     K   ++LAV
Sbjct: 56  PTAFAQGAAATLSERPVAE----------GAYILVDDVLTAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLTTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIINEFLPADCKLVRFGPDAD---IFLTRLEERKNSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   +L +   R E+      G  I 
Sbjct: 263 ERIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E ++ A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDIEALYDYAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLTPADQVLLKG 439


>gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
 gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
          Length = 454

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/484 (19%), Positives = 182/484 (37%), Gaps = 63/484 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKLT------LHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A       +            P + VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSEREVA----------GHPYIWVDDCLEAFQALASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         +     T  ++         + I L     ++ 
Sbjct: 104 AVTGSNGKTTTKDMIAAVLST------EYKTYKTQGNY--------NNEIGLPYTALHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + K   G  T +G  H+++  +++     K+++ +  
Sbjct: 150 DDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDG- 208

Query: 238 LPKESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +   I  AD   D Y  E           V+  G  G  I +K +    +K+ +T  
Sbjct: 209 MDSDGILIAPADTIVDPYLPE--------SQMVIRFG-DGAEIFVKDLQ--ESKESLTFM 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    + 
Sbjct: 258 TNVIDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNRTEW-KKAAN 316

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           G  I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++ + L+
Sbjct: 317 GADILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIMSLS 376

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVL 462
              + T      ED  ++        P             ++ +A + T  ++L   D +
Sbjct: 377 PETLDTLIF-YGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETVQKVLQPADQI 435

Query: 463 VVAG 466
           ++ G
Sbjct: 436 LLKG 439


>gi|224282637|ref|ZP_03645959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 158/500 (31%), Gaps = 75/500 (15%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q         +       SDSR ++ G +FVAI G + DGH F+ +A   GA   +V
Sbjct: 24  IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 83

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128
                              +VV +T   L L      A+R     P  ++ +TG+ GK++
Sbjct: 84  QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRAAGTPFTLIGITGSVGKTT 134

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +    G +   +G  +                 +                 + 
Sbjct: 135 TKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAE-------------MG 181

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS  G                  +G  H+    + +    AK  + + L+P +  A++ A
Sbjct: 182 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVP-DGLAVLNA 240

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--------------- 293
           DDA+   +   A      V   G  G         A   K                    
Sbjct: 241 DDAHVAAMAPLAPQGH--VFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFT 298

Query: 294 --SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               +G        + G   V NAL AA +   +G+    + E L +   +      V T
Sbjct: 299 LERADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVST 358

Query: 352 NSRGG---RIYVD-YAHTSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
             RGG    +  D +    +S+      L   R+      I V G   +    +  +   
Sbjct: 359 VRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEG 418

Query: 405 IALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPG-------------FIEKGNRI 446
           I    A + I     V +D+   E  + + + +  G                ++   ++ 
Sbjct: 419 IGEYAAGLPIDAVIAVGNDD---EHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQA 475

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           + +  A+   +   V+++ G
Sbjct: 476 DTLVRALAGDHDDTVVLLKG 495


>gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus
           denitrificans PD1222]
 gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paracoccus denitrificans PD1222]
          Length = 461

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 162/452 (35%), Gaps = 47/452 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  +  VS D+R I+ G +FVA+   + DGH F+ +A+ +GA A +VS           
Sbjct: 19  RDFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARALEKGACAALVSR------IPEG 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  + P+LVV +    L         +    ++A+TG+ GK+S     +      G    
Sbjct: 72  VAPDAPLLVVPDVLPALEALGRAGRARMRGKVVAITGSVGKTSTKEMARVALAGQGRVHA 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKL 204
                            +  +   +   L+ +       +     +H G  +      + 
Sbjct: 132 --------------AEASYNNHWGVPLTLARMPEDTDFAIVEIGMNHPGEIEPLARLARP 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +   H++     +     K  +F  L+ +   AII  D   ++ +   A +A 
Sbjct: 178 HVAMVTTVAAAHLEAFGAIEGIAREKGAIFRGLI-QPGTAIIPEDLPVTQLLRDCADDAA 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V+  G QG    LK         +V   V G+  DF+    G   V NA+       A
Sbjct: 237 AIVIGFGQQGMARPLKAETLDGV-TRVRARVLGETVDFMLASAGTHFVMNAVGMLAALSA 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            G D A   +HL       GR      +  G R+  D Y     SL   L  +  +T GR
Sbjct: 296 AGADVAEAAKHLSDWRPPLGRG--AVEDLDGIRLIDDAYNSNPTSLSAGLATLARLTGGR 353

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            + + G   +    +  +   +A D A  A+  V    PR     +   +   G+     
Sbjct: 354 RVAILGDMLELGPDEIALHAGMAGDPAMEAVDLVHTAGPRMRALHEALPQGRRGMHA--- 410

Query: 442 KGNRIEAIRTAIEMLNK-------QDVLVVAG 466
                    TA E+  K        D+++V G
Sbjct: 411 --------ETAAELAGKVGELVASGDIVLVKG 434


>gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
 gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
          Length = 457

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 180/483 (37%), Gaps = 60/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +     + +  IN++  DSR I AG +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEIAKVVGAKNDVT-AYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A               + ++   ++VD+  +     A+    K   +++AV
Sbjct: 56  QTAFDNGALATFTEKE---------LPADQVHILVDDALEAFQKLAAYYLEKTEVDVIAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G                 + I L     ++   
Sbjct: 107 TGSNGKTTTKDMIHDILATTYRTYKTQG--------------NYNNEIGLPYTALHMPDD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K      T +G  H+++  ++      KM++ +  +P
Sbjct: 153 TEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG-MP 211

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  ++ +D      ++     +   V+  G   +   L        K  +T S    D
Sbjct: 212 DGSLLLVPSDP-----IVNPFLPSNLEVVRFGDGAE---LTVSDLTEFKDHLTFSTNFLD 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    + G  I 
Sbjct: 264 GQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEW-KKAANGADIL 322

Query: 360 VD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIAL----DLAD 411
            D Y     ++++IL+    I     G+ I V     +  +    +  ++ L    D  D
Sbjct: 323 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
           + I        ED  ++        P             ++ +A ++   E L + D ++
Sbjct: 383 MVIF-----YGEDIAELSQLASQMFPLGHVYYFKKTADEDQFDAMVKQIKESLGEHDQIL 437

Query: 464 VAG 466
           + G
Sbjct: 438 LKG 440


>gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
 gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
          Length = 453

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWMHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
 gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
          Length = 499

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 160/471 (33%), Gaps = 62/471 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
               SDSR ++ G +FVAI G + DGH F+ +  AQGA A +V    +         +  
Sbjct: 37  TSACSDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVDHEVA--------DAGV 88

Query: 91  PILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           P +VVD+T + L   A     +      P  ++ +TG+ GK++    +  +    G +  
Sbjct: 89  PQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGITGSVGKTTTKDLMASLLSAMGETVA 148

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G  +                 +L                + A+  G   +    +   
Sbjct: 149 PVGSFNNEIGLPLTALKVNAGTRFLVAE-------------MGANHVGEIANLTSLVPPD 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                 +G  H+    + +    AK  + + L+P     ++ A+D +   +   A     
Sbjct: 196 IAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVP-GGVTVLNANDEHVAAMSGIAPG--- 251

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ------VTI-SVEGKDFDFLFPLPGEFQVYNALVA 318
            VL  G   +    + V A + +          +   EG+       + G   V NAL A
Sbjct: 252 EVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICGMHNVMNALAA 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +   +G+    +   L  +  +          V   +R   I   +    +S++  L 
Sbjct: 312 ATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNANPDSMKAGLD 371

Query: 375 NIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEK 427
            +    +        I V G   +    +R +  ++        +  +     R +D   
Sbjct: 372 GLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVNALIAVGSRGDDALD 431

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTA--IEMLN----------KQDVLVVAG 466
             AE +    G  + G+   A+  A  I+  +             V+++ G
Sbjct: 432 ALAEAMA--QGGKQVGDVRCAVDWAHDIDQADALVSRLATEHAGTVVLLKG 480


>gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
 gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
          Length = 454

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 166/450 (36%), Gaps = 37/450 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+ VS+D+R I  G +FVA+VG + D H F  QA+  GA A++V     +     
Sbjct: 19  GDDLLIDAVSTDTRTIDRGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRLDV----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P +VV +T+  L  FAS ++       +A+TG+ GK++V   V  I Q  G   
Sbjct: 74  ----NVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F      T  +F  D  +           L          + + A+  G   +    +K 
Sbjct: 130 F------TAGNFNNDIGVP-------LTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L      AI+  D     +  +   +  
Sbjct: 177 DIALVNNVAAAHLEGFGSIDGVKQAKGEIYQGL-SAGGIAIVNLDSNGEAKWDEVLADKK 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               S            +      +    + I+   ++ +    + G+  V NA+ A+ +
Sbjct: 236 VITFSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAIAASII 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +G     V   L+ L+ V GR E    + +   I   Y  +  +++  +  +     
Sbjct: 296 ALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSYNASVPAMKAAVDLLAAFPG 355

Query: 382 GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R +++       ++     R +    A    +  +    +       K+ +++  GI  
Sbjct: 356 QRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD------AKVISDLCQGI-H 408

Query: 439 FIEKGNRIEAIRTAIEMLNK-QDVLVVAGK 467
           F      IE I+  ++        ++V G 
Sbjct: 409 FETHQEMIEYIKQHLDQAVPENHTILVKGA 438


>gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 464

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 155/437 (35%), Gaps = 41/437 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +Q   +FVA+   + DGH F+ QA+ +GA A +V+           + ++ 
Sbjct: 24  SGVSIDTRTLQPDDLFVALKAAR-DGHDFVAQALEKGAAAALVT------HIPDDVAADA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+ +  L         +    ++ VTG+ GK+S    +  I    G +   +   
Sbjct: 77  PLLIVDDVQTALEALGRAARDRCKARVVGVTGSVGKTSTKEMLATILSDQGRTHASV--- 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ +       V     +H G         +      
Sbjct: 134 -----------ASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLARQARPHVALV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++  ++     + K  +FE L      AI+ AD  ++  +   A   G  ++ 
Sbjct: 183 TTVAAVHLEAFESVAGIAHEKAAIFEGL-EAGGTAIVNADLDHTDILRTCAARHGAVIVD 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G       L  V        VT    G+   F     G     N L A   C+A+G+D 
Sbjct: 242 FGRTASDYRLTGVTQSPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGALAACVALGVDL 301

Query: 330 ALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRII 385
              +  L K   V GR   E +     G    +D  Y     S+   L  +      R I
Sbjct: 302 DAAIAGLAKWAPVTGRGVRERLALPDGGQIELLDDSYNANPTSMAAALDVLAAAQGARRI 361

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRS------EDPEKI----RAE 431
              G   +    +R +   +A   A    D         R+      ED   +      E
Sbjct: 362 AFLGDMKELGPQERAMHAGLADVPAMARIDKVHCIGPLMRALHEALPEDKRGLWFETSDE 421

Query: 432 IIHGIPGFIEKGNRIEA 448
           +   +PG ++ G+ + A
Sbjct: 422 MARHLPGLVQAGDAVLA 438


>gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
 gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
          Length = 456

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 91/460 (19%), Positives = 159/460 (34%), Gaps = 35/460 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+   LS   +   +   + V +DSR I  G +FVA+ G + DGH ++ +  A+GA A
Sbjct: 7   LSEIAADLSARLI-GDDVAFSAVGTDSRTIAPGQLFVALTGPRFDGHDYLAEVAAKGAVA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V    +         +  P L+V +TR  L    +         + AVTG+SGK+SV 
Sbjct: 66  ALVEREVA--------NAPLPQLLVADTRLALGQLGALNRQAFTGPLAAVTGSSGKTSVK 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +         G    + +   +      +P+ L   L          + + A+
Sbjct: 118 EMLAAILRA--------GLNGAVLATRGNLNNDLGAPLTL---LELAPEHRAGVIELGAN 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G   + +   +      TN G  H+      +    AK  + E L  ++  A++  DD
Sbjct: 167 HVGEIAYTVSLTRPQVTIITNAGNAHVGEFGGPEKIVQAKGEILEGL-AQDGVAVLNLDD 225

Query: 251 AYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  +RA        ++   +  F            Q  T+            L GE
Sbjct: 226 KAFSTWQRRAAGHQVLSFALRDTRADFHGSDLARDERGCQGFTLRSPVGSVRIQLNLLGE 285

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL A     A+G+    + + LE L  V GR         G R+  D Y     S
Sbjct: 286 HNVANALAACAAAHALGLPLVAMAKGLENLQPVKGRA-VAQLAPNGMRVIDDSYNANPVS 344

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +   +  +   +   ++V+   G   +  +     +G+ A    D         R     
Sbjct: 345 MCAAVDILAGFSGRTVLVLGDMGELGEWAEQGHRDVGRHAAGKVDALYAVGPLMRF---- 400

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +           ++ E I  A+        L++ G
Sbjct: 401 ----AVEEFGSKGRHFVDQAELIE-ALRAEQAGSTLLIKG 435


>gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 452

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 164/435 (37%), Gaps = 36/435 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+ N +    +      I+ VS+DSR+I+A  +FVA++G + D H F+  A  
Sbjct: 1   MILMSLNEVAN-ICQGRLNGVNTSISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVAEE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A++VS           + S+ P ++V +T K   L    ++ +     +A+TG+ G
Sbjct: 60  QGAVALLVSHE---------VDSSLPQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I +RSG      G  +           + PS  +    L      G  H 
Sbjct: 111 KTTVKEMLASILKRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFSVIEL------GANHQ 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +  A +  L       ++       N+   H++   + +    AK  +FE L  + + AI
Sbjct: 165 NEIAYTTQL-------VRPDVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGL-KENATAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLF 304
              D            N      S        H   +          T++          
Sbjct: 217 YNLDSNGLPRWSDLFENKTVLSFSQENNQADFHASNIEINGLGASSFTLNTPVGSIVVSL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
            + G+  V NA+ AA L +      A + + L+ L  V GR   V     G ++  D Y 
Sbjct: 277 TIIGKHNVSNAVAAAALAVQANCTLADIQQGLQSLENVKGRVA-VEVLPSGLKVIDDTYN 335

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNP 420
            +  +++  +  +    +G   +V G   +           +G+ A       ++T    
Sbjct: 336 ASVPAMKAAVDLLGGF-NGSRWLVLGNMAELGKESLALHREVGEYAAPYQFEQVIT---- 390

Query: 421 RSEDPEKIRAEIIHG 435
              D  K+ +E+ +G
Sbjct: 391 -FGDDTKVISELCNG 404


>gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
 gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
          Length = 454

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/460 (18%), Positives = 171/460 (37%), Gaps = 37/460 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +   +  I+ VS+D+R I  G +FVA+VG + D H F  QA+  GA A++V 
Sbjct: 9   IANITRGELFGDDLLIDAVSTDTRAIDNGALFVALVGERFDAHNFCQQAVDAGAGALLVQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         N P +VV +T+  L   AS ++       +A+TG+ GK++V   V 
Sbjct: 69  KHLDV---------NVPQVVVSDTKMALGELASWVHQTCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q  G   F      T  +F  D  +           L          + + A+  G 
Sbjct: 120 SILQLKGKVLF------TAGNFNNDIGVP-------LTLLRSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    +K       N+   H++   +      AK  +++ L    S AI+  D +   
Sbjct: 167 IAYTTQLVKPDIALVNNVAAAHLEGFGSIDGVKQAKGEIYQGL-AAGSIAIVNLDSSGET 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQ 311
           +      +      S        +   +      +    + I+   ++ +    + G+  
Sbjct: 226 KWESVLADKEVITFSQSNSAADYYASNIVMNAAGEASFNLHIAASSQEIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + + +G     V   L+ L+ V GR E    + +   I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  +      R +++       ++     R +    A    +  +    +       K+
Sbjct: 346 AVDLLAAFPGQRWLILGNMAELGEESLALHRQVGEYAAPQKFEHVLTYGAD------AKV 399

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGK 467
            +E+  GI  F      IE I+  ++        ++V G 
Sbjct: 400 ISELCQGI-HFETHQEMIEYIKQHLDQAVPENHTILVKGA 438


>gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
 gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
          Length = 460

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 166/408 (40%), Gaps = 30/408 (7%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   E+   +   I   ++    I  VS+DSR IQ G +++ ++G   DG LFI + 
Sbjct: 1   MIERSLGEIAKMIGGEISDEKYSNLLIKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTG 122
             +GA A +  +   +++  +      P + V++T K L   A     +     ++ +TG
Sbjct: 61  EDKGASAFLADTDCKIKNNIS-----IPYIRVEDTLKSLQDLARAYRSELKNTKVIGITG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    + ++ +       +     TI +   +  +           LS      +
Sbjct: 116 SNGKTTTKDLLYEVLKE------KYKVQKTIGNLNNEIGVP-------KTILSLDEDTNI 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +   S G      +  +      TN+G  H++  +T++    AKM + E L  ++ 
Sbjct: 163 AIVEMGTDSFGDISLTTNISRPDIAIITNIGDSHLEKLKTKEGILKAKMEIVEGL-SQDG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I   DD   K+ +  ++    +++S G +     + K  +  N+ +V+ + +G+ +  
Sbjct: 222 YFIYNGDDPTMKKEIS-SYEVKQKMISFGEEDDNDFVVK-SSDDNRGKVSFTHDGETY-- 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             PL G   +YN  V   +   +G+ +  + + L ++     R   +     G  +  D 
Sbjct: 278 TIPLLGSHNIYNGGVTVLVSSLLGLSTDQIKKGLSEVTPANNRSSIIEFE--GFDVLDDC 335

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALD 408
           Y     SL   LK  + +      I+V G   +    +  +  ++  +
Sbjct: 336 YKSNPQSLRSGLKTTKLLGGYDSKILVLGDMLELGDSEDDLHYQVGSE 383


>gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
 gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
          Length = 431

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 141/391 (36%), Gaps = 32/391 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+D+R I  G +F A+ G   D + F P+A+ QGA  +V+       D    I  + 
Sbjct: 14  TGVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVID------DPKYFIEDDE 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
              +  +  K L   A+    +    I+ +TG++GK++    +  + Q    +   +G  
Sbjct: 68  RYFLAKDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQTKFKTVATVG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   LS      +  V + A+  G  +   +  +   G  T
Sbjct: 126 --------NLNNHIGVPLTL---LSIPEDAEMAIVEMGANKQGDIEELCEIAEPTHGFIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H++           K  LF+ L   +    I + D     + KR           
Sbjct: 175 NIGRAHLEGMGGPAGVLKTKTELFQFLRANKGTVFINSQDPVLSNMAKRFDKPVL----Y 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +G F  +  V A      V  +VEG +  +L  L G +   N   A  +     ++  
Sbjct: 231 PAKGDFCEVGFVEANPF---VKFTVEGTEEVYLSSLIGAYNFGNIANALAVGKYFEVEMK 287

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--- 387
             +E +        R + +   S    I   Y    +S+E+ ++    +T  +  ++   
Sbjct: 288 GAIEAIVNYQPSNMRSQLLEKRSNLI-ILDAYNANPSSMEVAIRTFGEMTGKKHKMIILG 346

Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             F  G   ++    +   I+    +    T
Sbjct: 347 DMFELGEHAEEEHAKLGEIISEYEIEKVCFT 377


>gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
 gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
          Length = 519

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 156/500 (31%), Gaps = 75/500 (15%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q         +       SDSR ++ G +FVAI G + DGH F+ +A   GA   +V
Sbjct: 24  IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 83

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSS 128
                              +VV +T   L L A            P  ++ +TG+ GK++
Sbjct: 84  QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRTVGTPFTLIGITGSVGKTT 134

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +    G +   +G  +                 +                 + 
Sbjct: 135 TKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAE-------------MG 181

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS  G                  +G  H+    + +    AK  + + L+P +  A++ A
Sbjct: 182 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVP-DGLAVLNA 240

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--------------- 293
           DDA+   +   A      V   G  G         A   K                    
Sbjct: 241 DDAHVATMAPLAPQGH--VFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFT 298

Query: 294 --SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               +G        + G   V NAL AA +   +G+    + E L +   +      V T
Sbjct: 299 LERADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVST 358

Query: 352 NSRGG---RIYVD-YAHTSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
             RGG    +  D +    +S+      L   R+      I V G   +    +  +   
Sbjct: 359 VRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEG 418

Query: 405 IALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPG-------------FIEKGNRI 446
           I    A + I     V +D+   E  + + + +  G                ++   ++ 
Sbjct: 419 IGEYAAGLPIDAVIAVGNDD---EHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQA 475

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           + +  A+   +   V+++ G
Sbjct: 476 DTLVRALAGDHDDTVVLLKG 495


>gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
 gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
          Length = 453

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 159/414 (38%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRELE------ 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 73  ---ADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +  G   + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDGYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L  + + AI+  D    +       +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGL-REGAVAIVNLDSNGGEHWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  + + ++ R
Sbjct: 296 EMGASLAEIRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 427

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 166/444 (37%), Gaps = 50/444 (11%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            +S+ ++ G +FVA+ G + DGH FI +A+ +GA A++   A    D          I++
Sbjct: 11  LNSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSDR---------IVL 61

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V NT + L+  A       P+ I+ +TG++GK++    + ++ +R        G  +T  
Sbjct: 62  VKNTVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGNMNT-- 119

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                              L+    + +  + + A+  G   H             N+G 
Sbjct: 120 -----------EYGLPLSILNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAVLLNVGS 168

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+++ ++++    AK+ + +      +    + D     ++ K+       VL  G +G
Sbjct: 169 AHLEFFKSRENIMEAKLEIVKHSKKDSAVVTFFDD----GDLRKKVPVLRENVLFFGTKG 224

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVL 333
             + L+      N       + G  F    P      Q+ N   +  +   +G    ++ 
Sbjct: 225 GDVVLEDWWYYENSTISEYRMFGSSFTIKLPGFWNRGQLLNLAASLCVMKVLGEKVDVLE 284

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
             L  L  VPGRF        G RI  D Y  +  + +M ++ +      +  VV     
Sbjct: 285 --LSNLKAVPGRFNVKEVE--GVRIIDDTYNASPEAFQMAIEALLKFPGRKFAVVGAMKE 340

Query: 393 DRDQG--KRPIMGKIALDLADIAIVTDDNP------------RSEDPEKIRAEIIHGIPG 438
             ++      ++GK  LD  D   V    P             ++  E+I  ++   +  
Sbjct: 341 LGEESKKFHEMLGKQ-LDALDGVYVFSTEPEAGWIKTRKKVLETDSAEEIARDLYTRVRK 399

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQ 459
               + K +R   I   +E+  ++
Sbjct: 400 GDTVLFKASRAVRIERVLEIFERE 423


>gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
 gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
          Length = 470

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 94/447 (21%), Positives = 153/447 (34%), Gaps = 41/447 (9%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   V+ DSR + AG +FVA+ G + DGH ++P     GA   + +              
Sbjct: 26  VTGAVAKDSREVVAGGLFVALPGERVDGHDYVPAVTEAGATVSLTTRPVD---------- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             P +VV +T+  L   A  +  + PE  ++ +TG+ GK+S    + Q+    G +    
Sbjct: 76  GCPCIVVADTQVALGELARYVVAQLPELTVIGLTGSQGKTSTKDLIAQLVAPYGPTVAPT 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +                 YL                + A   G   +         G
Sbjct: 136 GSFNNEIGHPLTALQADRDTRYLVAE-------------MGARHLGDIAYLCRITPPKVG 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  HI    ++ A   AK  +   + P    A++ ADD     +  R      R 
Sbjct: 183 LVLNVGYSHIGEFGSRDAIAQAKGEMIANVAP-GGTAVLNADDPRVAAMASRTEQT-IRT 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +              +   T+  +G+ F     L GE  V NAL AA   +A+G+
Sbjct: 241 FGEAPEADVRATDLEVDGEGRPGFTLHADGQSFPVQLQLIGEHNVSNALAAATAALAVGL 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---TSGR 383
               V + L     V      V     G  +  D Y    +S+   LK +  I      R
Sbjct: 301 TPEQVADGLNAAARVSQARMEVVERPDGVTVINDAYNANPDSVRAALKALVAIGRAREAR 360

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDPEKIRAEII-HGIP 437
              V G     GD    +   +G++A  LD+  +  V +       P  + A +      
Sbjct: 361 TWAVLGEMLELGDSSATEHDAVGRLAVRLDVNRLLAVGE----GAKPIHLGASLEGSWGN 416

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    EA+      L   DV++V
Sbjct: 417 ESAYVATIAEALELLRGELRSGDVVLV 443


>gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/451 (21%), Positives = 158/451 (35%), Gaps = 45/451 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N+V +DSR ++ G +FVA+ G + D H F+     QGA A+VV                 
Sbjct: 39  NDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVADQGAAAVVVER--------VPPGLAL 90

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P +VV +TR  L   A     +    ++ VTG++GK++V   +  I   +      +G  
Sbjct: 91  PAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNGKTTVKEMIATILAAAFGEEGYLGTR 150

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              ++           P+ L +  +         + +  +  G             G   
Sbjct: 151 GNFNNE-------IGVPLTLFRLRAQ---HQAAVIEMGMNHPGEIAVLSRIAAPTLGLVN 200

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N  R+H ++  T +A       +   L P +  A+  ADD ++    + A     RVLS 
Sbjct: 201 NAQREHQEFMATVEAVARENGAVIRHL-PADGVAVFPADDDFTPLWREEAGAR--RVLSF 257

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           G   +        A      + ++V+G       F       GE  V NAL AA   +  
Sbjct: 258 GLSAQADVSASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGEHNVRNALAAAACALGA 317

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    V+  LE    V GR +     S    I   Y    +S+   +  +  I   R++
Sbjct: 318 GIAIEAVVRGLESFAPVNGRLQRKEARSGALVIDDTYNANPDSVRAAIDVLAAIAGPRVL 377

Query: 386 VVFGCGGDRDQGK--RPIMGKIALDLADIAIVT-------DDNPRSEDPEKIRAEIIHGI 436
           V+   G   DQG      +G  A                         P+ +   +    
Sbjct: 378 VLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGELTKHAVTAYGATPQGVAQAL---- 433

Query: 437 PGFIEKGNRIEAIRTAIEMLNK-QDVLVVAG 466
                  + I A+  A+E        ++V G
Sbjct: 434 -----HFDDIAALNAAVEQAAPQGATVLVKG 459


>gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
 gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
          Length = 453

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 159/414 (38%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GVDRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQALTGGAVALLVQRELE------ 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 73  ---ADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +  G   + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDGYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L  + + AI+  D    +       +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGL-REGAVAIVNLDSNGGEHWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  + + ++ R
Sbjct: 296 EMGASLAEIRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9902]
 gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9902]
          Length = 449

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 94/456 (20%), Positives = 164/456 (35%), Gaps = 42/456 (9%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P    +  +  + +DSR +Q G  FV +VG   DGH F+ Q  A GA+A VV  ++S 
Sbjct: 16  LGPTPDPDMALGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSALGAQAAVVEQSWSD 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                 + S+     VD+T K     A        + ++AVTG++GK++    ++     
Sbjct: 76  P-----LPSDLLHWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTRELIRAALAP 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G      G  +                      LS  S      + +     G  +   
Sbjct: 131 LGDVHCSEGNNNNDIGVPLTV-------------LSADSHHCALVIEMGMRGPGEIERLS 177

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              +      TN+G  HI    +++A   AK  +    L  +   +I A DA  +  + +
Sbjct: 178 RCTEPDVAVITNIGTAHIGRLGSREAIAAAKCEI-TAALKSDGVVVIPAGDALLETALSK 236

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             +   RV+ V                +  Q+ +           PL G     N L+A 
Sbjct: 237 VWSG--RVVRVRLADDTPVAADCIGAIDAGQLEV----GAHRLPLPLEGRHNARNVLLAL 290

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIR 377
            +   +G+DSA +     ++ V  GR   +    +GG   +D  Y  +  ++   L  + 
Sbjct: 291 AVADQLGVDSASLNAM--EVSVPGGRNRRLV---QGGLTLLDETYNASPEAVMAAL-TLL 344

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEII 433
           +   GR   V G   +       +   +A   A    D  +V D            A   
Sbjct: 345 SSQPGRRFAVLGTMLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRA----MANAA 400

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            G+P      +  +A +   E L   DV+++ A +G
Sbjct: 401 AGLPRLAVVSSPEDAAKPLKEWLRPGDVVLLKASRG 436


>gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
          Length = 462

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 158/419 (37%), Gaps = 28/419 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+   I +    +      F     +  +  V  DSR IQAG +FV +V    DGH +I
Sbjct: 1   MKMT--IGEVAQAINANTENFDKAMLDESLTGVCFDSRKIQAGQLFVPLVAEH-DGHDYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A + +S     D +  +    P LVVD+        +     K    ++AV
Sbjct: 58  DNAIAGGASATLWAS-----DHADRLPLTIPALVVDDLLTAFQQLSKYYLDKINPRVIAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +         T T  +F                 L   S+ 
Sbjct: 113 TGSNGKTTTKDMIAAILSST------FNVTKTQDNF-------NNEIGLPYTILQMESNT 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +     G         +      T +G  HI++  T+    +AKM +    L  
Sbjct: 160 EFLVAEMGMDRPGQLDFLSKLARPDVAVITMIGEAHIEFFGTRDKIADAKMEI-THGLKA 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +   D+    E  ++   +  +          +          + Q  +++   + 
Sbjct: 219 DGFFVYDGDEPLLTERAQQVDESVIKATFGRKDSNDVFAIDSKDGQYQTQFHVNL-WPEI 277

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF  P+ G++ V NAL A  +     I   ++ + L K  +   R +++ + S+G RI  
Sbjct: 278 DFTIPMIGDYNVNNALAAISVGRIFRIHPQMMADKLAKFDLTKNRTQWL-SGSKGERILS 336

Query: 361 D-YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415
           D Y     + + +L   + T T GR I V G   +     + +   +  ALD A I +V
Sbjct: 337 DVYNSNPTAAKEVLTAFKNTTTKGRRIAVLGDMLELGTQSKAMHASLADALDPASIPVV 395


>gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
 gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
          Length = 457

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 160/436 (36%), Gaps = 31/436 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + D+  +     +N   I   +     IN VS+D+R ++ G +FVA+VG + D H F  Q
Sbjct: 1   MIDVSLEQICSAVNGQLIEAGKSNNSLINSVSTDTRTVEEGALFVALVGERFDAHDFCGQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+   A A++V     L         N   +VV++T+  L   ++ ++ +     +A+TG
Sbjct: 61  AVEANASALLVQRKLDL---------NITQVVVEDTKLALGQLSAWIHEQCNVPTMAITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++V   V  I Q+ G   F      T  +F  D  +           L   SS   
Sbjct: 112 SCGKTTVKEMVASILQQRGKVLF------TAGNFNNDIGVP-------LTLLRSESSDDY 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+  G   +    +K       N+   H++   +      AK  +F+ L     
Sbjct: 159 AVIELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGL-AAGD 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD 301
            AI+  +            +      S            +      +    +       D
Sbjct: 218 TAIVNLESNGGDFWKDVLADKNVLTFSESDDTADYFATNIRINEQGEACFDMQTPQGAID 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+  V NAL AA L I  G   A +   L  L  V GR E    +     I   
Sbjct: 278 VELGIIGQHNVANALAAAALSIQFGATLAEIKSGLANLISVKGRVEVQQLSQNIKLIDDS 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDN 419
           Y  +  +++   K + +    R +++       D+       +G+ A   A   ++T   
Sbjct: 338 YNASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT--- 394

Query: 420 PRSEDPEKIRAEIIHG 435
               D  K+ +E+ +G
Sbjct: 395 --YGDDTKVISEVCNG 408


>gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 463

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 155/413 (37%), Gaps = 33/413 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFI 60
           + +L  KD   ++N   I        KIN +S DSR I  +   +F+AI G K +G  FI
Sbjct: 1   MINLYLKDIALILNAKLI----GNNCKINSISIDSRKIFNKKNCLFIAIKGKKFNGECFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            ++I  GA A++ +   ++         N P L+V NT   L   +  +       I+A+
Sbjct: 57  KESIKNGAVAVINARKVNI---------NIPHLIVKNTIISLLRLSKWIRENSKAKIIAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK+SV   +  I               T S+     +    +       L    + 
Sbjct: 108 TGSSGKTSVKEIIFNILN-------------TFSNTIATKKNFNNNIGVPLTLLRLNKNH 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LP 239
               + V  +  G  +   + IK       N+   H+   ++      AK  +F  +   
Sbjct: 155 NFAIIEVGGNKFGEIKTSSNLIKPDIALINNISESHLSGFKSINGVSKAKEEIFSGIQGK 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           K    ++  +    KE  K+  +       +   + K+ +LK +   +   + +IS + +
Sbjct: 215 KNGIIVLNYNSNDWKEWKKKLKDNLVFWFGIIKNKKKYFYLKNIKKENFCIKFSISTQKE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + +   PL G   ++NA+ A  +   +G     +   L+K +    R   +  N     I
Sbjct: 275 ECEVSLPLIGYHNLFNAMAAIAISFLVGASMESIKYGLKKSYPFKRRLFPIFLNKNKIII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALD 408
              Y     S+   +  +  +   +II+   +   G  ++      +G     
Sbjct: 335 DDSYNANVGSMISAISVLNNMPGYKIIIIGDILELGKQKEIIIHKNIGFFISK 387


>gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF
           [Bifidobacterium bifidum PRL2010]
 gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 513

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 157/500 (31%), Gaps = 75/500 (15%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q         +       SDSR ++ G +FVAI G + DGH F+ +A   GA   +V
Sbjct: 18  IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 77

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSS 128
                              +VV +T   L L A            P  ++ +TG+ GK++
Sbjct: 78  QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRAVGTPFTLIGITGSVGKTT 128

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +    G +   +G  +                 +                 + 
Sbjct: 129 TKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAE-------------MG 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS  G                  +G  H+    + +    AK  + + L+P +  A++ A
Sbjct: 176 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVP-DGLAVLNA 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--------------- 293
           DDA+   +   A      V   G  G         A   K                    
Sbjct: 235 DDAHVAAMAPLAPQGH--VFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFT 292

Query: 294 --SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               +G        + G   V NAL AA +   +G+    + E L +   +      V T
Sbjct: 293 LERADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVST 352

Query: 352 NSRGG---RIYVD-YAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGK 404
             RGG    +  D +    +S+   L  +    SG     I V G   +    +  +   
Sbjct: 353 VRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSGEDPYRIAVLGAMLELGGDESALHEG 412

Query: 405 IALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPG-------------FIEKGNRI 446
           I    A + I     V +D+   E  + + + +  G                ++   ++ 
Sbjct: 413 IGEYAAGLPIDAVIAVGNDD---EHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQA 469

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           + +  A+   +   V+++ G
Sbjct: 470 DTLVRALAGDHDDTVVLLKG 489


>gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
 gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
          Length = 467

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 138/361 (38%), Gaps = 33/361 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  + +DSR  +AG  F+A+ G + D H FI Q  AQG E  +VS           + +
Sbjct: 36  QIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQGCEIAIVSRP---------VDA 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +   LVV++TR  L    +    ++P+  ++A+TG+SGK++    +  I  R   +    
Sbjct: 87  DICQLVVEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTLVTR 146

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +                      L          + + AS  G   +    ++    
Sbjct: 147 GNLNNDLGVPVM-------------LLELRPEHQYAVMELGASHQGEIDYTSKMVQPHVA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H+     +     AK  ++  +      +II A D +++ +  RA     + 
Sbjct: 194 GIINIGTAHLGEFGGRDGICRAKSEIYAHI---SETSIIPAADDFAEVI--RAAVRTEKS 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G  G+ ++   V         T++          P  GE  V NA  AA   +AIGI
Sbjct: 249 LSFGAGGE-VYASDVVLEAQSSSFTLNTPQGSKTVQLPFAGEHNVENATAAAAFALAIGI 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
               ++  LE+     GR  F+    +      D Y     S+    + +     G  ++
Sbjct: 308 GLDDIVAGLEQAVGAKGRLNFIP--HKDYLFIDDTYNANPGSMRAAAE-VLAQQQGIRVM 364

Query: 387 V 387
           V
Sbjct: 365 V 365


>gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrospira platensis str. Paraca]
          Length = 465

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 160/448 (35%), Gaps = 45/448 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  +++D+R++Q G +FVA+ G++ DGH F+  AIA+GA   VVS  +++         
Sbjct: 29  PVIGITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAKGALCAVVSREFAVSH------P 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++ V +T +     A     + P  ++ VTG+ GK++    +  +    G       
Sbjct: 83  EFPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGKTTTKELISAVLSHHGKVH---- 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  ++  +  +           L   S      + +     G         +   G 
Sbjct: 139 --KTFGNYNNEIGVP-------KTLLELRSDHDFAVIEMAMRGPGEIADLTRITRPTVGV 189

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267
             N+G  HI    ++ A   AK  L  E +P  S A++  D+   + +M  A        
Sbjct: 190 IVNVGTAHIGRLGSEDAIARAKCELLAE-MPDTSIAVLNHDN---RRLMSTATQVWAGTT 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG- 326
           ++ G +G       +         TI VEG   D   PLPG     N L A  +  AI  
Sbjct: 246 ITYGLEG------GILQGELLGHETIRVEG--IDLPLPLPGSHNASNFLAALAVLRAIAG 297

Query: 327 --IDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             I +  +   +     L +  GR +          +   Y     S    LK +     
Sbjct: 298 WEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGLESTLAALKLLAETPG 357

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            R I V G   +  +       ++  +   + +            +  AE   G+  FI+
Sbjct: 358 NRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILADLAEAQAMAEGAVGV-DFID 416

Query: 442 KGNRI--EA----IRTAIEMLNKQDVLV 463
             +    +A    I   +  L   D ++
Sbjct: 417 IQDLASPQAHQLMIDKVLAFLKPGDRVL 444


>gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum EA 2018]
          Length = 455

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/467 (17%), Positives = 181/467 (38%), Gaps = 39/467 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L + +  + +N   I  ++  +   N+VS D+R +  G IF+AI G   +G+ FI  
Sbjct: 1   MENLTFNEIAKAVNGKVI--LRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHN 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA   +V   +  +D   + + +  IL+V++T+K L   A          ++A+TG
Sbjct: 59  AVQKGAALCIVDEIHFEKD---SFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S       + +       +     T  +F                      S  V
Sbjct: 116 STGKTSTKDITASVLRS------KFRVFKTSGNF-------NNEIGLPLMIFKLDKSYEV 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +      +     +      TN+G  HI+  ++++    AK+ +  +   K++
Sbjct: 163 AVLEMGMNHFNEIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEI-TDFFTKDN 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+  D+   K+   ++ N     L      K  +L       ++      V+G+    
Sbjct: 222 LLIVNGDNDLLKKHEFKSINVLKTSL-----NKEGNLNAENLCLHEGNSEFEVQGEK--L 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
           +  +PG+  + NA+++    + +G+    + + L+ L +   R + V  N     I  D 
Sbjct: 275 VLNMPGKHNIENAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLDIV--NGENIVIVDDS 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           Y  + +S+   +   + +   R I V       G    +  + +      +  D  +V  
Sbjct: 333 YNASPDSMIAAIDVTKNLKGNRRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVG 392

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  ++        +       F E     E ++     + K D+ ++
Sbjct: 393 EFSKA------YLDGYKDKENFSEFETNEELLKFVKTDIRKGDIFLI 433


>gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
 gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
          Length = 476

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 139/408 (34%), Gaps = 33/408 (8%)

Query: 22  PMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           P       +   V +DSR  + G ++VA +G   DGH F+  A  +GA A + S      
Sbjct: 21  PTSGELPVVTGAVVTDSREAEPGSLYVARIGESMDGHQFVGAARDKGAVAALTSRPVDE- 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
                     P +VVD+ +      +  +  +  +  ++ +TG+SGK+S    +  +   
Sbjct: 80  ---------LPCVVVDDVQAAFVAISRAVLERATDLTVIGITGSSGKTSTKDLLGGVLGA 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +   +G  ++           T    +L              V + A   G   +  
Sbjct: 131 AAPTIAPVGSYNSEVGVPLTVTRVTADTRFL-------------VVEMGARGIGHINYLT 177

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                  G   N+G  H+    +++A   AK  L E L P +  A++ ADD   + +  R
Sbjct: 178 RIAPPQIGVVLNVGTAHVGEFGSREAIARAKAELVEAL-PSDGVAVLNADDPVVRAMADR 236

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             +A   ++    +              +    ++           L G   V NAL   
Sbjct: 237 -TSARVVLVGEAAEAAVRAEDVTVGSDGRATFRVTTPAGGATIALRLVGRHHVGNALAVL 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            + +  GI        + +  +V      V     G  +  D Y    +S+   L  + +
Sbjct: 296 AVALECGIPLDTATTSIAEAGIVSRWRMEVTERPDGVTVVNDAYNANPDSMRAALSALES 355

Query: 379 ITSGRI-IVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  GR    V G     G + D     +  +      D  +V  +  R
Sbjct: 356 MGEGRRTWAVLGSMLELGDESDTDHAEVGAEAQQRGVDELLVVGETAR 403


>gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa
           DSM 4126]
 gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa
           DSM 4126]
          Length = 436

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 147/385 (38%), Gaps = 31/385 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + + +DSR ++ G +F A+ G   +G+ F  +A+ +GA A+V+      QD   T     
Sbjct: 15  SGICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNT----- 69

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V++  + L L A+    K    IL +TG++GK++    +  +           G  
Sbjct: 70  --ILVEDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   LS      +  + + A+  G         +   G  T
Sbjct: 126 --------NLNNHIGVPLSL---LSIQKDHEIAIIEMGANHVGEIASYCQMAQPTHGLIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ HI      +     K  LF+ L   +    I   DA  K + KR  NA    ++ 
Sbjct: 175 NIGKAHIGEFGGFENIIIGKSELFDFLKKNDGVPFINTQDAVLKNMEKRFSNA----ITF 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +G  + LK          +  S EG        L G+F   N   A  +     +   
Sbjct: 231 PNEGDDLQLKPEKGTAF---LRYSTEGFS-HIDTHLVGQFNYLNVAAALCIGKYFEVTME 286

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +E  ++      R + + T++    I +D Y    +S+E+ +K++  I +   +V+ G
Sbjct: 287 KAIEATQEYMPENMRSQMIKTDN--YTILLDAYNANPDSMELAMKSLSAIENTESVVILG 344

Query: 390 CGGDRDQGKRPIMGKIALDLADIAI 414
              +          K+     D+ I
Sbjct: 345 DMLELGDTAELEHEKLGELAVDLGI 369


>gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 452

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 145/413 (35%), Gaps = 37/413 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             ++ + ++    Q  +  +  V  DSR ++ G +F  IVG K DGH F  QA+  GA A
Sbjct: 5   LTQIASAMASSIEQDHDLTVGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQAVENGACA 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S+   L         + P+L+V +T   L   A     K    ++ V+G++GK++V 
Sbjct: 65  VVASAPLDL---------DVPVLLVRDTTSALGRLARAWREKTRARVIGVSGSAGKTTVK 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             + Q+   +G +             A++ R            L     +    + +  S
Sbjct: 116 EMLAQVLSAAGRT-------------AKNFRNLNNQIGLPLSILEMDGDEDFWVLELGIS 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G        +   A    N+G  H++   +       K  L +  + K   A + AD 
Sbjct: 163 RPGDMDELGYILAPDAALLVNIGACHLEGLGSLAGVAEQKAVLLDH-VRKGGFACVNADY 221

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPG 308
               E+M+ +     ++++    G       +   +    +  T  V  ++         
Sbjct: 222 P---ELMQESTKRSPKLVTFSGTGARADYSCLRQENVAGAISYTFRVGHEELRCTVSAGI 278

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
                N      + + +G+  A +   L     V  R  FV T         D Y     
Sbjct: 279 -HVAENLAAVVAMAMELGMTFATIESALSAYSPVAQR--FVQTRVGTWLFIDDTYNANPV 335

Query: 368 SLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           S+   +   + +  G+ +V     +   G D  +  R + G IA   A     
Sbjct: 336 SMARSIGEAKRLGEGKRLVLVLGDMLELGRDSVRAHRELGGLIADTGASHCFF 388


>gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
 gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
          Length = 453

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
          Length = 466

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 142/387 (36%), Gaps = 29/387 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +S D+R ++AG +FVA+   + DGH F+ QA+ +GA A +V+           +
Sbjct: 21  DWQVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQALEKGAGAALVT------HRPDDV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+V++ +  L         +    ++AVTG+ GK+S    +  +    G +   
Sbjct: 74  AEDAPLLIVEDVQAALEALGQAARARTSARVVAVTGSVGKTSTKEMLATMLADQGRTHAA 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
           +               +  +   +   L+ +  +    V     +H G         +  
Sbjct: 134 V--------------ASYNNHWGVPLTLARMPRETEFAVIEIGMNHPGEIAPLARQARPH 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++           K  + E L P    A++  D A ++ + + A   G 
Sbjct: 180 VAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEP-GGVAVLNGDIAEAQVLKEEAERLGV 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + L  G  G+   L +           + ++GK  +      G     NAL A      +
Sbjct: 239 QHLWFGESGQGYRLLETRLEGEHTLAQVEIDGKPLELRIQSLGAHFAMNALGALVCVAGL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILK---NIRTI 379
           G D+    + L     V GR   V     GG+I      Y     S+   L+        
Sbjct: 299 GGDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALEVLAATPNP 358

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             GR I   G  G+    +  +   +A
Sbjct: 359 EKGRKIAYLGDMGELGPKEAELHRGMA 385


>gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
 gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
          Length = 465

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 131/355 (36%), Gaps = 32/355 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +FVAI G++ DGH F  QA+  GA A++ S              + P 
Sbjct: 31  VVIDSRAVEPGSLFVAIRGDRVDGHDFAAQAVEAGAVAVLASRPV-----------DAPA 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +VV +T   L+  A+ +    P   ++ VTG++GK+S    + ++  R G +   +   +
Sbjct: 80  VVVGDTVTALADLATAVCADLPSTTVIGVTGSAGKTSTKDLLARLTARIGPTIAPVESFN 139

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                            YL   LS             A   G   H         G   N
Sbjct: 140 NEIGHPLTVLKAGEDTRYLVLELS-------------ARDAGHISHLARIAPPRIGVVLN 186

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H+     + A   AK  L E L P +  A++ ADD     V   A     RV   G
Sbjct: 187 VGTAHLGVFGGKDAIAKAKGELVEAL-PADGVAVLNADDPL---VAAMARRTDARVAWYG 242

Query: 272 Y-QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +   +  + V      +   T+         +  L GE  V NAL AA     +G+  
Sbjct: 243 RAESAAVRAEGVTLDDRGRAAFTLRTPSGAAPVVLRLYGEHAVENALAAAAAAYELGLPV 302

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           A + E L +          V   + G  +  D Y    +S+      +  +  GR
Sbjct: 303 ATIAEELSEAEPRSRWRMEVTDRADGVTVINDAYNANPDSMRAAFGALDALAGGR 357


>gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 851

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 171/463 (36%), Gaps = 32/463 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +LI   +         + +  + DSR  Q G +F+A+   + DGH FI  AIA GA  +
Sbjct: 5   ADLIAAGAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V       Q   + I ++  +++ ++    L  +A   + KH    +A+TG+ GK+S   
Sbjct: 65  VC------QYAPSVIPASITVIICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKR 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + Q+                       +  +  + + L+  ++ L++Q    +   A  
Sbjct: 119 AIAQVLAS--------------RYSVLRSPRSFNADLGLSVTMAELAAQQWAVLEFGADH 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G             G  TN+G  H+    +Q A  + K  + ++L P    AI+  DD 
Sbjct: 165 PGEIAQLCQLFPPEIGIVTNVGSAHLGAFGSQAAIAHEKAAIIQQL-PAHGYAILNGDDP 223

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE- 309
               + +R H    R+L VG      I    V +     Q TI +     + +  L    
Sbjct: 224 LVAAMAERTH---ARLLRVGQNAACEIRWGNVTSTVQSTQFTIHIPEHAPECIQLLASGV 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V  A  A  +    G+  A + E L  L    GRF  +     G  I  D +     S
Sbjct: 281 PSVQAAAFAIAVGYVAGLSLAEMREALADLRPAHGRFNPL-VGRNGATIIDDTFNAAPES 339

Query: 369 LEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +   L+ + ++ + R I + G   +            G+IA   AD+ I   D       
Sbjct: 340 VYAALQTLGSLPARRRIAILGDMAELGAASARFHQQAGQIAAQHADLLITKGDQAALAAT 399

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGK 467
               A   +G        +   A+  A+   L   D+++V G 
Sbjct: 400 SAREASATYGYQINTMSVHSAAAVLAAVPTDLGAGDLVLVKGA 442


>gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 423

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 139/384 (36%), Gaps = 29/384 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++   V++D+R      +F  + G + +G+ F+P AI +GA  +V +         A   
Sbjct: 9   KECKGVATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTNDKKWSYLPQA--- 65

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                ++V++T K L   A          I+A+TG++GK++    +  +  +S       
Sbjct: 66  -----ILVEDTLKTLQELALYHRHYLATPIIALTGSNGKTTTKELIYSVLNQS------F 114

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  +F     +           L       +  V + A+  G         +   G
Sbjct: 115 RTLKTEGNFNNHLGVPL-------TLLRLTPETDIAIVEMGANHPGEIAQLCRIAEPDFG 167

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN GR H++   + +    AK  L+  L           D+    E+  R  N     
Sbjct: 168 YITNFGRAHLEGFGSFEGVIQAKSELYNYLKKDNKRIFFCQDN----EIQVRLLNGYSNT 223

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S   +G       +     K+ + + +  ++ +    L G++   N   A  +     +
Sbjct: 224 YSFSMEG--NKKANLQLSLYKESLLVKLHWEESNIQTHLIGKYNAMNVAAAICIGNYFKL 281

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
               ++  +E       R +FV   + G +I +D Y    +S+   ++  + I S   I+
Sbjct: 282 TKEAIIHGIEGYIPTNNRSQFV-EKAHGNKILMDAYNANPSSMHAAIEAFKEIPSANKIL 340

Query: 387 VFGCGGDRDQGKRPIMGKIALDLA 410
           + G   +          ++  D+A
Sbjct: 341 ILGDMKELGDYSPAEHQQLVNDIA 364


>gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Arthrospira platensis NIES-39]
          Length = 468

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 160/448 (35%), Gaps = 45/448 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  +++D+R++Q G +FVA+ G++ DGH F+  AIA+GA   VVS  +++         
Sbjct: 29  PVIGITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAKGALCAVVSREFAVSH------P 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++ V +T +     A     + P  ++ VTG+ GK++    +  +    G       
Sbjct: 83  EFPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGKTTTKELISAVLSHHGKVH---- 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  ++  +  +           L   S      + +     G         +   G 
Sbjct: 139 --KTFGNYNNEIGVP-------KTLLELRSDHDFAVIEMAMRGPGEIADLTRITRPTVGV 189

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267
             N+G  HI    ++ A   AK  L  E +P  S A++  D+   + +M  A        
Sbjct: 190 IVNVGTAHIGRLGSEDAIARAKCELLAE-MPDTSIAVLNHDN---RRLMSTATQVWAGTT 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG- 326
           ++ G +G       +         TI VEG   D   PLPG     N L A  +  AI  
Sbjct: 246 ITYGLEG------GILQGELLGHETIRVEG--IDLPLPLPGSHNASNFLAALAVLRAIAG 297

Query: 327 --IDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             I +  +   +     L +  GR +          +   Y     S    LK +     
Sbjct: 298 WEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGLESTLAALKLLAETPG 357

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            R I V G   +  +       ++  +   + +            +  AE   G+  FI+
Sbjct: 358 NRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILADLAEAQAMAEGAMGV-DFID 416

Query: 442 KGNRI--EA----IRTAIEMLNKQDVLV 463
             +    +A    I   +  L   D ++
Sbjct: 417 IQDLASPQAHQLMIDKVLAFLKPGDRVL 444


>gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 451

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 86/493 (17%), Positives = 193/493 (39%), Gaps = 60/493 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E++N   +    +   +I+ V  DS++++ G +FV I+  K +GH ++
Sbjct: 1   MNLKKL-----EEVVNGEGLQ-ESFHLIEIHGVCIDSKNMKEGNLFVPIIRMK-NGHEYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 107

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++V   +  I        +  G  + QIG   TI    +D              
Sbjct: 108 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERDTEFLILE------- 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +  S  G  ++     +      T +G+ H++   +++    AK  +
Sbjct: 161 -------------MGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSREEIAKAKFEI 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT 292
            + L   +   +   D+    + +         + S  + GK+   L       ++  V 
Sbjct: 208 IDGL-NDDGLFLYNGDEPLLSQNINMLS-----IESKSFGGKYTNDLFPTNVQLDEYGVH 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +      +  PL G+  + NA+V   +     + +  + E L+++++   RF+F+   
Sbjct: 262 FKLNNTKIQYDIPLHGKHNILNAIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAK 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGG--DRDQGKRPIMGKIALD 408
           +    I   +  + +S++  ++ ++ +     ++IV+        + +     +GK+  +
Sbjct: 322 TGFTIINDAWNASPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKGETYHREIGKMLNE 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
            +   + T       +  KI AE        G ++  +    I    ++++ + DV+++ 
Sbjct: 382 KSIQYVFT-----YGELAKIVAEEARKNYDAGKVQSFDNKAEIAEEVLKIITQNDVVLLK 436

Query: 466 G-KGHETVHIVTN 477
           G +G     IV  
Sbjct: 437 GSRGMALEEIVQK 449


>gi|304413639|ref|ZP_07395083.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
 gi|304283730|gb|EFL92124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
          Length = 521

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 153/455 (33%), Gaps = 60/455 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L  +   +++N   I      +   + +V  DSR +  G +FVA+ G + DGH F  +AI
Sbjct: 4   LSLRQLAQVLNAELIGIEHASDHALVTQVVIDSRKLSTGCLFVALKGARFDGHDFAEEAI 63

Query: 65  AQGAEAIVVS--------------------------------------SAYSLQDFSATI 86
             GA A++V+                                       A +  + +A+ 
Sbjct: 64  TAGAIALLVNKIAMNKQQVDPSLYPSPLKLPFGCQGDRPMSVDNYVIRRAPAANNATASK 123

Query: 87  RSNT---------PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                        P LVV +TR  L   AS L  +    ++AVTG+SGK+SV      I 
Sbjct: 124 AKGISLKSVPLPIPQLVVQDTRLALGQLASWLRQQVSARVVAVTGSSGKTSVKEMTAAIL 183

Query: 138 QRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           ++    +        T  +   D  +        A+    +   G  H+   A S GL  
Sbjct: 184 RQCKTPTKKNSHVLYTSGNQNNDIGVPLTLLRLTAEHDFVVIELGANHLGEIAYSAGLS- 242

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +  +    NL   H++   +  A   AK  +F  +LP +  AII AD       
Sbjct: 243 ------RPESVLVNNLAAAHLEGFGSLAAVAQAKGEIFS-VLPPQGYAIINADSHDWPHW 295

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                       +     G       +       +  +       +    L G   V NA
Sbjct: 296 QGMLSQQRVWRFAFNAGDGIDFFASDIKVDSQTTRFILHSPLGSVEISLSLLGRHNVANA 355

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L AA L +++G D   + + L + H  PGR   +        +   Y     S+    + 
Sbjct: 356 LAAAALAMSVGADLEAIAKGLAQSHATPGRLFPILLAEGKLLLDDSYNANVGSMIAAAQL 415

Query: 376 IRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALD 408
           +  +   R++ V   G   +        +G  A  
Sbjct: 416 LAEMPGYRVMAVGDMGELGETAVDCHRQVGSAARQ 450


>gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 441

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 140/380 (36%), Gaps = 36/380 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  VS +SR +  G +FVA+V +  DGH +I  A+ +GA A++V   +        I +
Sbjct: 21  QVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRGAAAVLVDDQHD-------IPN 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V +T   L    +    +    ++A+TG++GK++       +  +      +  
Sbjct: 73  DVPAVIVPDTLVALQQLGAFRRQELNPKVVAITGSNGKTTTKDMTAAVMAK------RYK 126

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  +F  +  +           L+  +   V  V +     G        +      
Sbjct: 127 TFKTPENFNNEIGVPM-------TLLTMPADTEVLVVELGMDRPGQLTALSKLVVPDVAI 179

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G  HI++ QT+     AK+ +   L P +    I  D+     + +        V 
Sbjct: 180 ITMIGEAHIEFFQTRAKIAQAKLEIVAGLKP-DGVLCIPFDEPL---LTQADVAQQVVVF 235

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G              + + +  I           PL G + + NAL A    I + ID
Sbjct: 236 GDGVSAVQGDATTTTFTYQETRFAI-----------PLIGGYNIMNALAAVSAGILLHID 284

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               +E L+   +   R E + T      I   Y     ++  +L  ++ I +    VV 
Sbjct: 285 LDDAVEALQTFDLTKNRTERLVTARGVNLISDVYNSNPTAVAAVLATLKAIPAPHKYVVL 344

Query: 389 GCGGDRDQGKRPIMGKIALD 408
           G   +  +    +   +A +
Sbjct: 345 GDMLELGEQAATLHANLAKE 364


>gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CMR15]
          Length = 485

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 99/449 (22%), Positives = 174/449 (38%), Gaps = 30/449 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V++DSR +  G +FVA++G + D H F+P  +A+GA A++VS   +      
Sbjct: 25  GPDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRRLA-DMPDL 83

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              S   +L V +TR  L   A+    + P  ++AVTG++GK++V   +  +   +   +
Sbjct: 84  PDLSGVAVLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMISAVFACAVGEA 143

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
            ++     +++            I L   L  L++Q    V     +H  +   L  I +
Sbjct: 144 ARLATAGNLNN-----------DIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAIAQ 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAH 261
                  N  R+H ++  + +A            LP +  A+   D A   +   + RA 
Sbjct: 193 PTVALINNAQREHQEFMVSVEAVAAE-HAAVLAALPADGVAVFPRDVANGGDYAPLWRAA 251

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               RVL  G +G  +    V    N Q++ +      F F  PL G     NAL A   
Sbjct: 252 AGTRRVLDFGIEGGAVSAA-VTDTANGQRIDVHAPDLRFSFTLPLLGVHNARNALAATAC 310

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A GI   ++ + L     V GR +    +  G  I   Y    +S+   +  + T+ +
Sbjct: 311 ALAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAAIDALATLPA 370

Query: 382 GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R +V+   G    QG    R I         D  + T          ++   ++    G
Sbjct: 371 PRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLAT---------GELTLHMVEAFGG 421

Query: 439 FIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
                   EA I   +  +     ++V G
Sbjct: 422 GARHFASAEALIEQGVPAIAPGATVLVKG 450


>gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 459

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 100/458 (21%), Positives = 169/458 (36%), Gaps = 53/458 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            + ++  V+ DSR +  G +FVA+ G +  DGH F P A+  GA A++ +          
Sbjct: 22  PQTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPSAVRAGAVAVLAARPL------- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143
               + P ++VD+    L  +A        E +++A+TG+SGK+S    + Q+ QR+G +
Sbjct: 75  ----DVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSGKTSTKDLIAQVLQRAGAT 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F  G  +            T    +L              V + A   G   +      
Sbjct: 131 VFTQGSFNNEIGLPITALEATADTRHL-------------VVEMGARGQGHIAYLTQITP 177

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAH 261
              G+  N+G  H       +    AK  L E L    +   A++ ADDA    V   + 
Sbjct: 178 PRIGAVLNVGTAHAGEFGGPEMTAKAKGELVEALPSEAEGGVAVLNADDA---RVAAMSA 234

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               RV++ G +    ++   V      +   T+     D      + GE QV NAL AA
Sbjct: 235 RTKARVVTFGVERSADVYATDVTLDGQGRASFTLHTPTGDAPVRLQVVGEHQVPNALAAA 294

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            +  A G+D+A + + L     +      V     G  +  D Y   ++S    L+ +  
Sbjct: 295 AVAEAAGMDAAQIGKALTAAESLSEGRMRVTERPDGVTVVNDAYNANADSTAAALRALAH 354

Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    +GR I + G   +          +I    A + I         D      E    
Sbjct: 355 LGRERAGRTIALLGEMRELGASSAEEHRRIGALAAVLGI---------DVLVAVGEGDAR 405

Query: 436 IPGFIEKGN-RIEAIRTAIEM------LNKQDVLVVAG 466
           +       + R+EA + A             DV++V G
Sbjct: 406 VLATEYGPDGRVEATKAAAGEWLSRYNFRAGDVVLVKG 443


>gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
 gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
          Length = 453

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 159/414 (38%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISAVSTDSRTIPAEALFVALVGERFDAHDFASQAVIGGAVALLVEHELD------ 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 73  ---ADCSQLVVADTKQALGQLGAWVHTQCKTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   + +    AK  +++ L  + + AI+  D    +       +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIEGVKRAKGEIYQGL-REGAVAIVNLDSNGGEHWKTVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  + + ++ R
Sbjct: 296 EMGASLAEIAHGLAHLSKVKGRVDLTHLRDDITLIDDSYNASVPAMKAAVDLLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A   +   ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFSFEFVLT-----YGKDAKVISDLCQG 404


>gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 465

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 91/445 (20%), Positives = 174/445 (39%), Gaps = 27/445 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I ++S DSR I +G +F AI G++ DGH F+  A+   A   VV +     +    + S
Sbjct: 25  EIKQISIDSRTINSGELFFAIKGDRFDGHDFVMDALRAEAVGAVVDNE--QVERYNNVDS 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  I+ V++T + L   A          ++ +TG++GK++    V  + +       +  
Sbjct: 83  DEVIIGVEDTTRALQDLAEYYRSLFDIPVIGITGSTGKTTTKDLVASVLET------KFK 136

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  ++  +       P+ L +  S   +     V +     G  +      +   G 
Sbjct: 137 TLKTEGNYNNE----FGLPLTLFRLDS---TYEAVVVELAMRGLGDIKTLCQIAQPQIGV 189

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H++   +Q+    AK  L E L P    AI+  DD Y +++   A      +L
Sbjct: 190 VTNVGLTHLECLGSQENIAKAKSELVENL-PPTGTAILNGDDKYVRQM---ADETKAEIL 245

Query: 269 SVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             G +        +         +  +S + ++F    PL GE+ VYNAL A G+ + +G
Sbjct: 246 YYGRESGNNLQASRVDNLGEAGLKFRVSRQLEEFTIDLPLAGEYNVYNALAAVGVGLKLG 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRI 384
           ++   + + L +  +   R E          I   Y     S+E  L  +  I    G +
Sbjct: 306 LNINEIQQGLAEPDLTGMRGEIKELKDDITLINDAYNANPTSMEAGLDLLVDIGTDKGGL 365

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAI---VTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           I V G   +          +I   + +  I   +T  +  S    +   ++         
Sbjct: 366 IAVLGDMLELGSAAEEAHRQIGKKVINKKIDYLLTVGDLASL-IGQEAKKLGMDSSRIFI 424

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  E  R  ++++   D +++ G
Sbjct: 425 CDDNQEINRQLLQLIKPDDTILLKG 449


>gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           cholerae LMA3894-4]
          Length = 453

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806]
          Length = 454

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 94/464 (20%), Positives = 176/464 (37%), Gaps = 42/464 (9%)

Query: 6   LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L      +L++      + +  +  ++ +++DSR I++G  F+A+ G+  +GH FI  AI
Sbjct: 5   LSLNQLAQLLSLQDKADISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAI 64

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+GA A++V         S    SN P+ +V NT K     A     +    ++A+TG+ 
Sbjct: 65  ARGAAALIVDQPV-----SVNYSSNIPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSV 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVT 183
           GK++    +  +    G          T++++         + I + K L  L       
Sbjct: 120 GKTTTKELIASVLATRGKVH------KTLANY--------NNEIGVPKTLLELDETHDSA 165

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +     G         +      TN+G  HI    ++ A   AK  L     P  S 
Sbjct: 166 VIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIGRLGSESAIAEAKCEL-LSESPSSSI 224

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  D     E  KR        ++ G+ G  I  + +         T+ V G DF+  
Sbjct: 225 AVLNYDHPLLTETAKRV--WQGETITYGFFGGDIVGELLDLT------TLRVNGLDFN-- 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G     N + A  +   +GID   + + + K+++  GR +          +   Y 
Sbjct: 275 LPLSGRHHALNFMAALAVAKILGIDWTSLQQGI-KVNLPSGRAKRYQLEPDILLLDETYN 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419
               S+   L  ++     R + V G   +       +  ++   +     D   V  D+
Sbjct: 334 AGLESMLAALDLLKATPGQRHLAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDD 393

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           P      K  AE   G+     + +  + I    E+++  D ++
Sbjct: 394 P----EAKFIAEAATGVACECFQTH-ADLINRLKEVIDSGDRIL 432


>gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
 gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
          Length = 466

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 159/447 (35%), Gaps = 39/447 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + V +DSR ++ G +FVA+ G + D H F+   +A+GA A++VS    +         +
Sbjct: 29  FSRVHTDSRTVEPGDLFVALKGERFDAHDFLADVVARGAAAVMVSRKVDV---------D 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR  L   A+          +AVTG++GK++V   +  I   +     ++  
Sbjct: 80  VPALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNGKTTVKEMIAAIFAAAVGEGDRLAT 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +++                  L   +   +  + +  +  G   +     +      
Sbjct: 140 GGNLNN----------DIGLPLTVLRLRAHHKLAVLELGMNHPGETIYLAGIAQPTVAVV 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRV 267
           TN  R+H ++  + +A  +        L P +  A+   D           R      +V
Sbjct: 190 TNAQREHQEFMVSVEAVAHEHASAIAAL-PADGVAVFPVDAESGGAYAAIWRQAAGTRKV 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G          V   +  Q + ++   + F     + G   V NAL A    +A G+
Sbjct: 249 LSFGTDASADVRATVSLENGVQVLDVTAPDRRFTLRLHVLGVHNVRNALAATACALAAGV 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D A +   +     V GR +   T +    I   Y    +S+   +  +    + R++V+
Sbjct: 309 DVAAIQAGIAGFTAVKGRLQVKHTPAGTVVIDDTYNANPDSMRAAIDVLAGFATPRLLVL 368

Query: 388 FGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
              G   DQG      I         D    T          ++    +    G      
Sbjct: 369 GDMGEVGDQGPMFHTEIGAYARERGIDALWAT---------GELAPHAVQAYGGGARYFA 419

Query: 445 RIEAIRTAIEMLNKQDV-----LVVAG 466
           R E +  A+E   +  V     ++V G
Sbjct: 420 RAEDLAQALEADKEGTVANAAAVLVKG 446


>gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
          Length = 475

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 146/391 (37%), Gaps = 28/391 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            R+ + + V+ D+R +Q G +FVA+ G + DGH ++ QA+  GA A +VS         A
Sbjct: 21  GRDWQASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQALQTGASAALVSR------RPA 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++ P+L+V +    L+        +    I AVTG+ GK+     +       G + 
Sbjct: 75  DLAASAPLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGKTGSKEMLAAALAAYGTTH 134

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G          +      +P+ LA+   +          +  +     +     ++ 
Sbjct: 135 ASKG----------NLNNHIGAPLSLAR---FSRDAAFAVFELGMNHPEEIRPLSRLVRP 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-A 263
            A   TN+   H  +    +   +AK  +F+ L P     ++  D++    +   A   A
Sbjct: 182 HAALITNVEMVHAGFFAGIEQIADAKAEIFDGLEP-GGTVVLNRDNSQFGRLAGHAGRLA 240

Query: 264 GCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             R++  G        L    + H   +V   + G+   +     G     N+L  A   
Sbjct: 241 IERIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRHWAINSLGVAATL 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNI--- 376
           +A+G+D A+ +  L ++  + GR  +   +   G    +D  Y  +  ++   L      
Sbjct: 301 LALGLDPAIGMAALGRVTAMRGRGGQLQLSLPDGDLTLIDESYNASPPAVRAALAVFAET 360

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           R     R I V G   +           +A 
Sbjct: 361 RPAAGARRIAVLGDMLELGATAPEAHRGLAE 391


>gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
 gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
          Length = 493

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 160/471 (33%), Gaps = 62/471 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
               SDSR ++ G +FVAI G + DGH F+ +  AQGA A +V    +         +  
Sbjct: 31  TSACSDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVDHEVA--------DAGV 82

Query: 91  PILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           P +VVD+T + L   A     +      P  ++ +TG+ GK++    +  +    G +  
Sbjct: 83  PQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGITGSVGKTTTKDLMASLLSAMGETVA 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G  +                 +L                + A+  G   +    +   
Sbjct: 143 PVGSFNNEIGLPLTALKVNAGTRFLVAE-------------MGANHVGEIANLTSLVPPD 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                 +G  H+    + +    AK  + + L+P     ++ A+D +   +   A     
Sbjct: 190 IAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVP-GGVTVLNANDEHVAAMSGIAPG--- 245

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ------VTI-SVEGKDFDFLFPLPGEFQVYNALVA 318
            VL  G   +    + V A + +          +   EG+       + G   V NAL A
Sbjct: 246 EVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICGMHNVMNALAA 305

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +   +G+    +   L  +  +          V   +R   I   +    +S++  L 
Sbjct: 306 ATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNANPDSMKAGLD 365

Query: 375 NIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEK 427
            +    +        I V G   +    +R +  ++        +  +     R +D   
Sbjct: 366 GLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVNALIAVGSRGDDALD 425

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTA--IEMLN----------KQDVLVVAG 466
             AE +    G  + G+   A+  A  I+  +             V+++ G
Sbjct: 426 ALAEAMA--QGGKQVGDVRCAVDWAHDIDQADALVSRLATEHAGTVVLLKG 474


>gi|330859319|emb|CBX69666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia enterocolitica W22703]
          Length = 298

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 89/293 (30%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ + +   ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G     +         TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +    II A
Sbjct: 184 VSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFS--THQSEHKIINA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           DD   +  + +   A        + VG+ G ++   +V    N   +      
Sbjct: 242 DDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSW 294


>gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
 gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
          Length = 454

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 150/374 (40%), Gaps = 24/374 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +     +S+DSRH+Q G +F+A+ G   D H F+ +   +   A++V             
Sbjct: 20  DTLFEGISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKVAAVLVER--------VPE 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P ++V +TR  +   A     +    ++ VTG++GK++V   +  I + +      
Sbjct: 72  NYPLPAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEMIASIFRTA------ 125

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G     +S   +N +  P  ++    +          + +  +  G   +     +   
Sbjct: 126 WGENCLATSGNFNNDVGVPLTVFRLNEMHR-----AAVIELGMNHIGEMAYLASIAQPTV 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N  R+H ++ Q+ +A       +   +LP+   A+  ADDAYS      A     +
Sbjct: 181 GLVNNAQREHQEFMQSVEAVARENGTVI-RMLPENGIAVFPADDAYSSLWAGYAGGR--Q 237

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            ++ G+               K ++ +S+ G+  +      G   V NA+ AA  C+A G
Sbjct: 238 TMTFGFSKDADVSAAYRIEKGKTRLVMSLAGEQVEMSLSTSGRHNVRNAMAAAACCLAAG 297

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           I    + E LEK   V GR E   T   G  +  D Y    +S+   +  +  + S  I 
Sbjct: 298 IGKLEIAEGLEKFVPVRGRLER-KTAFNGALLIDDTYNANPDSVRAAIDVLADMPSDGIF 356

Query: 386 VVFGCGGDRDQGKR 399
           V+   G   ++G+R
Sbjct: 357 VLGDMGEVGEEGER 370


>gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
 gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
          Length = 457

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 151/409 (36%), Gaps = 31/409 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN VS+D+R ++ G +FVA+VG + D H F  QA+   A A++V     L         N
Sbjct: 28  INAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEANASALLVERKLDL---------N 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VV++T+  L   ++ ++ +     +A+TG+ GK++V   V  I Q+ G   F    
Sbjct: 79  ITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSCGKTTVKEMVASILQQRGKVLF---- 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T  +F  D  +           L   ++     + + A+  G   +    +K      
Sbjct: 135 --TAGNFNNDIGVPL-------TLLRSEANDDYAVIELGANHIGEIAYTTQLVKPQVALV 185

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+   H++   +      AK  +F+ L      AI+  +            +      S
Sbjct: 186 NNVAAAHLEGFGSINGVKQAKGEIFQGL-AAGDTAIVNLESNGGDFWNDVLADKSVLTFS 244

Query: 270 VGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                     K +      +    +            + G+  V NAL AA L I  G  
Sbjct: 245 ESDSKADYFAKNIRINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAALSIQFGAS 304

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V   L  L  V GR E    +     I   Y  +  +++   K + +    R +++ 
Sbjct: 305 LDEVKNGLANLISVKGRVEVQQLSQNIKLIDDSYNASVPAMKAAAKLLSSFKGQRWLILG 364

Query: 389 GCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                 D+       +G+ A   A   ++T       D  K+ +E+ +G
Sbjct: 365 NMAELGDESLALHRQVGEYAAPFAFEHVLT-----YGDDTKVISEVCNG 408


>gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 448

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 153/425 (36%), Gaps = 42/425 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   L+     + +   ++  S +S++I    +F+ + G + DGH F
Sbjct: 1   MNL------WLSEIAKALNGELKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118
           + +A+  GA + +                  P + V +T   L   AS +  K     ++
Sbjct: 55  VEEALQNGAISFISHKEIE--------NVRVPYVKVKDTLAALQGLASYVRDKLKGLTVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK+S   ++  +      +    G  +                           
Sbjct: 107 GVTGSVGKTSTKEYIFNVLSCKYKTFKNQGNLNNHIGLPFSILNMPEDTQ---------- 156

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +  S+ G         K   G  TN+G  HI+  +++   F AK  + +  +
Sbjct: 157 ---VAVFEMGMSNFGEISKLSQIAKPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDG-M 212

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P+    II  D+       K       +V+++G + +     +    H       S E  
Sbjct: 213 PESGILIINNDNDILNLHKKELKR---KVVTIGIENESNFRAQNVQRHQNG---FSFEVG 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + +         +YN+L A  +   +GID  LV E + +   +  RFE +   S    I
Sbjct: 267 GYTYFIKSFNFHDIYNSLFAIAIGTILGIDRQLVKEAIRQKERLKRRFEVIKKGS--ITI 324

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y  +++S+   + +I      +I+V   +   G   ++  R +   I     D+ I
Sbjct: 325 VDDTYNASTHSMLSAIDSICEFDGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384

Query: 415 VTDDN 419
            T  +
Sbjct: 385 CTGKD 389


>gi|255529994|ref|YP_003090366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
 gi|255342978|gb|ACU02304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
          Length = 433

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 131/387 (33%), Gaps = 26/387 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +D+R+I  G +F A+ G K D + F  +A+  GA   ++ +           ++N 
Sbjct: 15  STVCTDTRNIVPGCLFFALKGEKFDANTFAEEALKLGAAYSIIDNE--------AYQTNE 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+V +    L   A     +    ++ +TG++GK++    +  +  R   +    G  
Sbjct: 67  RCLLVSDVLTALQDLARHHRSQLHIPVVGLTGSNGKTTTKELINAVLSRKYKTFATRGNL 126

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                      LS      +  + + A+     +      +   G  T
Sbjct: 127 NNHIGVP-------------LSILSLGPEIEMAVIEMGANHQKEIEFLCGIAQPTHGLIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H+D     +     K  LF  L      A I  ++ Y  E+ ++A     +V+  
Sbjct: 174 NIGMAHLDGFGGFEGVKKGKAELFAYLKQHSGFAFINRNNPYLLEMSEKAQ--LSKVVYY 231

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +       K+       +++   +  +F     L G +   N L A  +     +   
Sbjct: 232 GTESSNTVAGKLLKTDPFIELSWQSKAGEFYIALNLTGAYNFENILAAVCIGQFFEVSPV 291

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
            +   L        R +   T S    +  D Y    +S+   L NI  +      V+ G
Sbjct: 292 EINAGLSGYFPNNNRSQLTKTASN--TVICDFYNANPSSMAAALTNIELLKGSNKTVIIG 349

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVT 416
              +  +        I      + I T
Sbjct: 350 DMFELGEESAKQHLNIIEQAEKLDIAT 376


>gi|308811498|ref|XP_003083057.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
 gi|116054935|emb|CAL57012.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
          Length = 657

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 112/575 (19%), Positives = 220/575 (38%), Gaps = 97/575 (16%)

Query: 6   LIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L+ + F +  ++       +  + +I+ +++D   + +G +FV  VG +  G     +A+
Sbjct: 58  LLREIFADAEVDAEWYGVDEDEDVEISGIANDINALLSGDLFVCPVGGEA-GASLAREAV 116

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
           A G  AIV S             ++ P  VV N  + L+  A   YG     +  +A+TG
Sbjct: 117 AAGPVAIVASERVEG-------VADVPCAVVANVDEALADIARVFYGDPSTALTAIALTG 169

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTS---------------TISSFA---------- 157
             GK++ +  V+ + + + +    +G                  T               
Sbjct: 170 AVGKTTTSYLVKSVFEAADIKMGLVGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRD 229

Query: 158 ---------------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                           +        +   +  + ++  G     +E S+  + +    G+
Sbjct: 230 RTSTAPGWLAPYRGKYEFEELGADALQFQQLTAGIADNGANAAVMEVSAEQVRRKATRGM 289

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-IIYADDAYSKEVMKRAH 261
                + T+      +Y+     Y +    +F+ L   E+   +I  D+  +    + A 
Sbjct: 290 NFDIVALTSFEGARKNYNGADSEYSSFVADVFKVLENAETQRGVINIDEEDADLCREYAS 349

Query: 262 NAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  S  +G     ++  +V     +  +++S    + + +  L GE  +     A 
Sbjct: 350 GVPVVTYSTQIGNTAADVYPARVDFSLFETAISLSTPAGNVEVVLGLVGEHMIGPICCAT 409

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +A  I   ++   LE   V+PGR E V    +   + VD A+T   +E +++++R  
Sbjct: 410 AIGLAAEISLDVIAAGLEACEVIPGRMELVDM-GQDFSVLVDNANTPEGIERVIQSVRAA 468

Query: 380 TSGRIIVVFGCGGDR--DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
              R+I V GC GD   ++G+R ++GK+A D++D+  +T+D+P++EDP KI  +I  G  
Sbjct: 469 NCRRVITVIGCEGDMGDERGERAVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFR 528

Query: 438 GFIEK---------------------------------------GNRIEAIRTAIEMLNK 458
             I +                                        +R  AIR AI M  +
Sbjct: 529 NEIYENDKIKDEALFPFLKDMYEVHENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAER 588

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            DV+++ G+G +    V   EK    D    R+ L
Sbjct: 589 DDVVLILGRGSKDY-FVVGREKHWFDDVVEARDAL 622


>gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
          Length = 454

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 167/408 (40%), Gaps = 35/408 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L  K   EL N  +I   ++ +  +  +S+D+R IQ   +F+A+ G+  DG  +I
Sbjct: 1   MLTRNL--KTITELTN--TIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   VV+  Y   +       + P++ VDNT++F+   A          ++A+
Sbjct: 57  EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYINSLKCKVIAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +       +     T  ++  +  L+                 
Sbjct: 110 TGSNGKTTTKDIMSSLLKE------KYKVVKTQKNYNNEIGLS-------KTIFDIDDDT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +   + G  +   +         TN+G  H+   +T++    AK  + E L  +
Sbjct: 157 EVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGL-KE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
           +   I+  DD+  +EV K+ +    + ++ G +      ++ + A       +I+    D
Sbjct: 216 DGIFILNNDDSILREV-KQEYKLPEKTITFGIKPDSDYRMEMIKADETGSTFSIN----D 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   L G  Q+YNA ++  +   +G+D + + + L+ + +   R E +  +     I 
Sbjct: 271 HVFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELILLDK--FHIL 328

Query: 360 VD-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
            D Y     SL   L+    +    R I V G   +    +  +   I
Sbjct: 329 NDSYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNI 376


>gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
 gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
          Length = 453

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKN 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
 gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
          Length = 449

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 164/450 (36%), Gaps = 43/450 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E     V  DSR I+   +FV + G + DGH F  QA   GA A + S        +  
Sbjct: 18  NETPFASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHP------TIE 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +  ++ V +T K     A     K    I+ +TG++GK++    V+ +  +   +  
Sbjct: 71  PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYK 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +                  L                +     G  +      +  
Sbjct: 131 TQGNHNNELGVPLTILHAPEDTQVLILE-------------MGMDHAGEIEVLSRLAEPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A + T +G  HI+   +++    AKM +   L  K+   ++ AD+   +  +    N   
Sbjct: 178 AAAITLIGEAHIENLGSREGIAKAKMEITAGL-KKDGFFMMPADEPLLEPFV---PNLTQ 233

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            + + G       L+      ++ Q   +V G  F    P+ G + V NAL+A G+    
Sbjct: 234 TIETFGLTEGD--LQGDIVEESQDQTIFTVAGTTF--TLPVLGGYNVKNALIAIGIGRHF 289

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGR 383
           G+    + E L    +   R ++V T   G  I  D Y     ++ ++L + R +  +GR
Sbjct: 290 GVADEAIKEGLAHFQLTKNRTQWV-TAGNGAAILSDIYNANPTAMGLVLDSFRKLPLAGR 348

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            I V     +       +  ++A  L D   +  +       ++ + ++  + +      
Sbjct: 349 RIAVLADMLELGPDSAQMHEQMAAHLDDSFQLVFL-----YGKEMQALQKRLANTALADK 403

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +     + + I + IE L   D LV+ G
Sbjct: 404 VRYFAIDEKPQLIASLIETLEPSDSLVIKG 433


>gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
 gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
          Length = 454

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 166/408 (40%), Gaps = 35/408 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L  K   EL N  +I   ++ +  +  +S+D+R I+   +F+A+ G+  DG  +I
Sbjct: 1   MLTRNL--KTITELTN--TIINEKYHDIMVKGISTDTRTIEKDNMFIALRGDNFDGQNYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   VV+  Y   +       + P++ VDNT++F+   A          ++A+
Sbjct: 57  EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYISSLDCKVIAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +       +     T  ++  +  L+                 
Sbjct: 110 TGSNGKTTTKDIMSSLLKE------KYKVVKTQKNYNNEIGLS-------KTIFDIDDDT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +   + G      +         TN+G  H+   +T++    AK  + E L  +
Sbjct: 157 EVAVLEMGTENFGEISQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGL-KE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
           +   I+  DD   +EV K+ +    + +S G +      ++ + A       +I+    D
Sbjct: 216 DGIFILNNDDPVLREV-KQEYKLPEKTISFGIKPDSDYRMEMIKADETGSTFSIN----D 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   L G  Q+YNA ++  +   +G+D + V + L+K+ +   R E +  +     I 
Sbjct: 271 HVFNIELLGHHQMYNATMSIIVAELMGLDYSDVAKGLKKIELTGMRNELILLDK--FHIL 328

Query: 360 VD-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
            D Y     SL   L+    +    R I V G   +    +  +   I
Sbjct: 329 NDSYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNI 376


>gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
 gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia
           rickettsii]
 gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 449

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 164/446 (36%), Gaps = 43/446 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G  +  +  +K      T
Sbjct: 135 NNKLGMLINLASMADDTEYAIFEL-------------GMNHQGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLS 269
           N+   H+++  + +    AK  +F     K   A+I AD     +++    N +   + S
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFANF-SKNDIAVINADTNCYNKILSILKNLSITDIHS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   K      +     +Q  +   +  K  D   P        N      +   +G D
Sbjct: 241 FGRSAKTSAELMLYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
             +   HL  +    GR E +  N +  R+  D Y  +  S++  L+ ++ + +     +
Sbjct: 301 IEIAANHLANISPTKGRGEII--NIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAI 358

Query: 388 FGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSED---PEKIRAEIIHGIPGFI 440
            G   +  +  + +  K+   + D       +   N +  D   P KI          + 
Sbjct: 359 IGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIA-------KKYF 411

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  E I    ++    +++++ G
Sbjct: 412 KNVD--ELITHITDLFEGNELILIKG 435


>gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 493

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 160/471 (33%), Gaps = 62/471 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
               SDSR ++ G +FVAI G + DGH F+ +  AQGA A +V    +         +  
Sbjct: 31  TSACSDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVDHEVA--------DAGV 82

Query: 91  PILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           P +VVD+T + L   A     +      P  ++ +TG+ GK++    +  +    G +  
Sbjct: 83  PQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGITGSVGKTTTKDLMASLLSAMGETVA 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G  +                 +L                + A+  G   +    +   
Sbjct: 143 PVGSFNNEIGLPLTALKVNAGTRFLVAE-------------MGANHVGEIANLTSLVPPD 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                 +G  H+    + +    AK  + + L+P     ++ A+D +   +   A     
Sbjct: 190 IAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVP-GGVTVLNANDEHVAAMSGIAPG--- 245

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ------VTI-SVEGKDFDFLFPLPGEFQVYNALVA 318
            VL  G   +    + V A + +          +   EG+       + G   V NAL A
Sbjct: 246 EVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICGMHNVMNALAA 305

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +   +G+    +   L  +  +          V   +R   I   +    +S++  L 
Sbjct: 306 ATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNANPDSMKAGLD 365

Query: 375 NIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEK 427
            +    +        I V G   +    +R +  ++        +  +     R +D   
Sbjct: 366 GLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVDALIAVGSRGDDALD 425

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTA--IEMLN----------KQDVLVVAG 466
             AE +    G  + G+   A+  A  I+  +             V+++ G
Sbjct: 426 ALAEAMA--QGGKQVGDVRCAVDWAHDIDQADALVSRLATEHAGTVVLLKG 474


>gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 451

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 183/484 (37%), Gaps = 42/484 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+++   +    +   +I+ V  DS+ I+ G +FV I+  K DGH ++
Sbjct: 1   MNLKKL-----EEVVDGEGLQ-ESFHYIEIHGVCIDSKSIKEGNVFVPIIRVK-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYG------TPPKGMPIIFVDDTLFALQQLAQFYRKELNVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++                +L          
Sbjct: 108 TGSNGKTTVKDIISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILE------- 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  S  G  ++     +      T +G  H++   +++    AK+ + + L   
Sbjct: 161 ------MGMSEKGQIRNLSIIAQPDIVIITMIGHSHLETLGSKEEIAKAKLEIIDGL-KD 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E   +   D+    +  K   +  C+     Y      L       ++  V   +     
Sbjct: 214 EGLCLYNGDEPLLLKN-KNLSSITCKAFGEKYTND---LFPTNVQLDEYGVHFKLNDSKI 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  + NA+V   +     + +  + + L ++++   RF+F+   +    I  
Sbjct: 270 QYDVPLHGKHNILNAIVGIAVGQFYNVPTEKIQKALRQVNITHMRFQFLTAKTGFTIIND 329

Query: 361 DYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++T+     ++IV+                +GK+    +   + T
Sbjct: 330 AWNASPSSMKAAIETLQTLNAYKKKMIVIGDMLELGKNAETYHREIGKMLNQESIQYVFT 389

Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVH 473
                 E  E +  E      I       ++ +     ++++ K+D++++ G +G     
Sbjct: 390 ----YGELAEIVAEEARKKYDIGKVQSFNSKAKIAEEVLKVITKKDIILLKGSRGMALEE 445

Query: 474 IVTN 477
           IV N
Sbjct: 446 IVQN 449


>gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
 gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
          Length = 471

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 154/475 (32%), Gaps = 47/475 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR    G +FVA VG + DGH F   
Sbjct: 1   MIALSLAEIAAVVGGQTHDIPDPSVQVTGPVVRDSREAVPGSLFVAFVGERVDGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                        A       A+     P +VV++ +  L   A  +  +    ++A+TG
Sbjct: 60  ----------AVVAAGAVAVLASRPVGVPAIVVEDVQAALGALARHVVNRLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ Q    + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLQTKAPTVFTPGSLNNEIGLPLTALSATEDTRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             + + A   G  ++  +      G   N+G  HI     ++    AK  L E L     
Sbjct: 158 -VLEMGARGIGHIRYLTELTPPKVGVVLNVGSAHIGEFGGREQIAQAKGELVESLPAAED 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ-QVTISVEGK 298
              AI+ ADD   + +  R      +V+  G      +  + V    + Q    +     
Sbjct: 217 GGAAILNADDPLVRAMASRTK---AKVILFGESDEADVRAENVRLTDSGQPSFRLHTPSG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  +
Sbjct: 274 ASDVTMRLYGEHHVSNALAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTV 333

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIA-----LDLAD 411
             D Y     S+   L+ +  +  GR    V G   +           +      L+++ 
Sbjct: 334 VNDAYNANPESMRAALRALVAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSK 393

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  V       E           G      +   +   AI      L   DV++V
Sbjct: 394 LVAVGG----REASWLQLGAYNEGSWGEESVHVSDAQAAIDLLRSELRPGDVVLV 444


>gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 457

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/433 (20%), Positives = 159/433 (36%), Gaps = 45/433 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E++   +    Q+          DSR I+AG +F+ + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLAAKNDV-SQFENVTFRNAEFDSRLIEAGDLFIPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  QGA A +     +            P ++VD+        A     K   ++LAV
Sbjct: 56  ATAFDQGATATLSERPVAE----------GPYVLVDDVLAAFQALAQYYLEKTGVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  I K   G  T +G  H+++  ++      KM++ +  + 
Sbjct: 156 ----VLEMGQDHLGDIHLLSEIAKPKTGIVTLVGEAHLEFFGSRTEIAKGKMQIADG-MK 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K    ++ AD     +++        +V+  G                K  +T      +
Sbjct: 211 KGGLLLVPAD-----KIVNDFLPDQQKVVRFGPDADIC---LTRLEERKDSLTFEANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+  + + +   +L +   R E+    + G  I 
Sbjct: 263 QAIDLPVTGKYNATNAMIASYVALQEGVSESAIRQAFAQLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+    I     GR   V     +     + + G +   L +  ++
Sbjct: 322 SDVYNANPTAMRLILETFSAIPASQGGRKAAVLADMKELGADSKLMHGAMITSL-NPEVI 380

Query: 416 TDDNPRSEDPEKI 428
           TD     ED E +
Sbjct: 381 TDLFLYGEDMEAL 393


>gi|110637119|ref|YP_677326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110279800|gb|ABG57986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 426

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 134/377 (35%), Gaps = 31/377 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++D+R ++ G +F A+ G   +G+ F   A+  GA  +VV  A  +QD         
Sbjct: 14  RSVTTDTRKVKNGDLFFALKGPNFNGNTFAATALEMGAAYVVVDEAEVVQD--------D 65

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+    L   A+         ILA+TG++GK++    V  +  +   +   +G  
Sbjct: 66  RYVLVDDVLTTLQQLANLHRRTLGIPILAITGSNGKTTTKELVNAVMSKKYKTYATVG-- 123

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   L+   S     V + A+           ++   G   
Sbjct: 124 --------NLNNHIGIPLTL---LAMDESIEFGIVEMGANHQKEIASYCSFVEPNYGLIN 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++     +     K  L++ L      A I + + +  E+              
Sbjct: 173 NVGKAHLEGFGGFEGVKKGKGELYQYLFETNGIAFINSKNEHLMEMSPFEAPVL-----Y 227

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G    F + K + +          + G +      L G++   N L A  +    G+ S 
Sbjct: 228 GRNSDFYNAKFLKSDP----FVAFIAGNEELVETKLVGDYNFDNILAALCIGKYFGVPSI 283

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
              + +E+      R + V T  +   I   Y     S+   ++N  ++     +V+ G 
Sbjct: 284 AANQAIEQYDPTNNRSQIVKTE-KNEVILDSYNANPTSMRAAIENFASLQKENKVVILGD 342

Query: 391 GGDRDQGKRPIMGKIAL 407
             +  +        I  
Sbjct: 343 MYELGEESEVEHANIGA 359


>gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
          Length = 237

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 26/245 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLKD 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP- 114
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 115 -ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172
              ++ +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH+T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVKSL 222

Query: 233 LFEEL 237
           LF  L
Sbjct: 223 LFARL 227


>gi|325268572|ref|ZP_08135202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
 gi|324989100|gb|EGC21053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
          Length = 504

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 153/420 (36%), Gaps = 40/420 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   AG IF+A+ G   DG+ F   A+ +G    VV  A   +        +   
Sbjct: 82  VTTDSRSCPAGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEAEYAK------AGDARF 135

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    +  +         +    +T
Sbjct: 136 ILVDDALVTYKELARAHRRRFGIPVIGITGTNGKTTSKELISAVLSE------KFNVHAT 189

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +++  D  +           L       +  + + AS  G  +  +  ++   G  TN+
Sbjct: 190 EANYNNDVGVP-------RTLLGIRPEHDIAVIEMGASHPGDIEKLVRYVEPTCGLITNV 242

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L        +   +A   E+ ++      R+++ G 
Sbjct: 243 GRAHLQGFGSFEGVKRTKGELYDFLKAHGGLLFLNESNADLTEMAEQ--REFDRIVTYGQ 300

Query: 273 QGKFIHLKKVCAIHNKQQVTISV------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                   +V +     + T             ++    L G + + N L A  + +  G
Sbjct: 301 DSTADVQGQVVSCAPFLKFTWRALNTPQPSSNTYEVQTRLVGSYNLDNMLAAISVGLHFG 360

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + +  V   LE       R +   T +    I   Y    +S+   ++N R +     + 
Sbjct: 361 VTAQQVNHALENYIPRNNRSQLTET-AHNRLIVDAYNANPSSMSAAIENFRLMQVENKMA 419

Query: 387 VFGCGGDRDQGKRPIMGKI-----ALDLADIAIVTDDNP-------RSEDPEKIRAEIIH 434
           + G   +  +       ++     A  + D+ +V ++         +  D E+++AEI  
Sbjct: 420 ILGDMRELGEASGEEHQRVVGELEAAGIDDVWLVGEEFGKTRCAFRKFRDVEEVKAEIER 479


>gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 460

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 187/473 (39%), Gaps = 43/473 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYG------TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   ++ I + +       G  ++                +L          
Sbjct: 117 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILE------- 169

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  S  G  ++     +      T +G+ H++   +++    AK+ + + L  +
Sbjct: 170 ------MGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGL-RE 222

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +   D+     + +    +     + G +     L       ++  V   +     
Sbjct: 223 NGLFLYNGDEPL---LSRNNKTSSVNCKTFG-EKDTNDLFPTNVQLDEYGVHFKLNHTKI 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+ T   G  I  
Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFSKVPTEKIQEALQQINITQMRFQFL-TAKIGFTIIN 337

Query: 361 D-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIV 415
           D +  + +S++  ++ ++ +    + I+V G   +   + +     +GK+  +     + 
Sbjct: 338 DAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVF 397

Query: 416 TDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           T      E  + +  E      I       N+ E     ++++ K+DV+++ G
Sbjct: 398 T----YGELAKFVAEEARKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLLKG 446


>gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus]
          Length = 463

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 92/448 (20%), Positives = 166/448 (37%), Gaps = 40/448 (8%)

Query: 29  KIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++   V  DSR +  G +FVA  G + DGH F                A        T  
Sbjct: 25  EVTASVEYDSRKVVPGGLFVAFPGERVDGHDFAS-----------AVVAAGAAGVLGTRD 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +  P +VV+++ + ++  A  +  + PE  ++ +TG+SGK++   ++ Q+  R G +   
Sbjct: 74  TGEPGVVVEDSLRAVATLAHEVVARLPELTVVGLTGSSGKTTTKDYIGQLLSRLGPTVAL 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +    F            +L              + + A   G  +H     +   
Sbjct: 134 PGSLNNELGFPYTVLQAGADTRFL-------------VLEMGARGVGHIRHLTGIARPSI 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N+G  HI    + +    AK  L E L P+   A++ ADDA    +  R    G R
Sbjct: 181 GVVLNIGAAHIGEFGSVEGTALAKGELVEAL-PQTGVAVLNADDALVSAMASR---TGAR 236

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIA 324
           V++VG             +    + +  +E  +        + G  QV N+L AA + + 
Sbjct: 237 VVTVGEAAGAQLRAVDVTLDPAGRASYVLEHGERRGTVRLRVAGRHQVANSLSAAAVALT 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            G+    ++  L ++ +V  R   V     G  +  D Y    +S    L+ +  +++GR
Sbjct: 297 AGLAFDDLVTALSEMSMVSDRRMDVFERPDGVTVIDDSYNANPSSTAAALRALAAMSAGR 356

Query: 384 IIVVFGCGGDR----DQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                          +      +G++A +   D  I   +N R        AE+      
Sbjct: 357 RTTAVLGYMAELGEFEVSGHAEVGRLAAELGVDRLIAVAENAR--PILDGAAEVGAWRGT 414

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                ++  AI    + L   DV++V G
Sbjct: 415 ARFAADQAAAIEILQDDLRADDVVLVKG 442


>gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli WV_060327]
 gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli RN587/1]
          Length = 452

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVL 388


>gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
 gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
          Length = 452

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 172/448 (38%), Gaps = 35/448 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +I+ VS+DSRHI    +FVA++G + D H FIP    QGA A++VS          
Sbjct: 19  GADCQISSVSTDSRHIDEEGLFVALIGERFDAHDFIPAVQEQGATALLVSKE-------- 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + +  P ++V +T+K L L A  ++        A+TG+ GK++V   +  I  RSG   
Sbjct: 71  -VDTTLPQVIVSDTQKALGLVAKHVHQVCHTFTFALTGSCGKTTVKEMLASILTRSGEVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +           + PS  +    L      G  H +  + +  L Q        
Sbjct: 130 ATAGNFNNEIGVPLTLLRSQPSNDFAVIEL------GANHQNEISYTTQLAQ-------P 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   + +    AK  +FE L  +   AI   D     +         
Sbjct: 177 NVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGL-QENGIAIYNLDSNGLPKWSSLFEGKQ 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               ++       +   +      +    ++    +      + G+  V NA+ AA L I
Sbjct: 236 VVSFAMDDSSADFYASNIEVNAIGEPSFQLNTPKGNIQVSLGIIGKHNVANAVAAAALAI 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
                   + + L++L  V GR   V T + G ++  D Y  +  +++  +  +      
Sbjct: 296 QAHASLNDIQQGLQELGSVKGRVA-VETLASGLKVIDDTYNASVPAMKAAVDLLGGFKGQ 354

Query: 383 RIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           R +V+       ++       +G+ A       +VT       D  K+ +E+ +G   F 
Sbjct: 355 RWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVT-----FGDDTKVISELCNG-RHFE 408

Query: 441 EKGNRIEAIRTAIEMLNKQDV-LVVAGK 467
            + +    +   ++++   +V ++V G 
Sbjct: 409 TRSDLNAYLLKELQLIKHNEVTVLVKGA 436


>gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
 gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
          Length = 452

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 154/412 (37%), Gaps = 27/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILN-GELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +                      L          +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNN-------------DIGVPMTLLRLTPEYDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F  L P+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+ +     D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQIPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
             S+   ++ +  +   R++VV      G + +     +         D  +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVL 388


>gi|327312708|ref|YP_004328145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
 gi|326946102|gb|AEA21987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
          Length = 437

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 144/440 (32%), Gaps = 37/440 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR    G IF+A+ G   DG+ F   A+ +G    VV      +        +   
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAK------ADDGRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     + P  ++ +TGT+GK++    +  +                
Sbjct: 70  ILVDDALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEK------------ 117

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +                  L       +  + + AS  G  +  +  ++   G  TN+
Sbjct: 118 -FNVHHTEANYNNDVGVPRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +A   E+   A     R+++ G 
Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLKAHDGLLFLNESNADLMEMA--AQREFSRIITYGQ 234

Query: 273 QGKFIHLKKVCAI-----HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                    V +         Q ++       ++    L G + + N L A  + +  G+
Sbjct: 235 DETADVQGNVVSCAPFLKFTWQALSHQPSSGTYEVQTHLIGSYNLDNMLAAIAIGLHFGV 294

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               V   LE       R +   T +    I   Y    +S+   ++N R +     + +
Sbjct: 295 TPQQVCHALENYIPHNNRSQLTET-AHNRLIVDAYNANPSSMAAAIENFRLMQVKDKMAI 353

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
                    G    +G  + +     +    N   ++   +  E       F +  +  E
Sbjct: 354 L--------GDMRELGAASGEEHQKVVDLLKNTGIDNVWLVGEEFGKTRTSFRKFHDVEE 405

Query: 448 AIRTAIEMLNK-QDVLVVAG 466
            ++  I         +++ G
Sbjct: 406 -VKAEIARCRPENHYILIKG 424


>gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
 gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
          Length = 454

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 167/451 (37%), Gaps = 36/451 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +   +  I  VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V 
Sbjct: 9   IADITGGELVGNDLSIESVSTDTRAIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                     T+  N P +VV +++  L   A+ ++       +A+TG+ GK++V   V 
Sbjct: 69  K---------TLNVNVPQVVVADSKVALGQVAAWVHQACQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q  G   F      T  +F  D  +           L          + + A+  G 
Sbjct: 120 SILQLKGKVLF------TAGNFNNDIGVP-------LTLLRSQQDDDYAVIELGANHVGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            ++    +K       N+   H++   +      AK  +++ L      AI+  D     
Sbjct: 167 IEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGL-AAGGIAIVNLDSNGEA 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQ 311
           +  +   +      S        +   +      +    + I+   ++ +    + G+  
Sbjct: 226 KWDQVLADKKVITFSQNNTDADFYASNIVLNAAGEASFDLHIAATSQEIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + +  G     V   L+ L+ V GR E    +     I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALQFGATLEEVRTGLKHLNKVKGRVEVEELSDNIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  +      R +++       ++     R +    A    +  +    +       K+
Sbjct: 346 AVDLLSAFQGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD------AKV 399

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +E+  GI  F      I+ I+  ++    +
Sbjct: 400 ISELCDGI-HFETHQEMIDYIKQHLDQAGPE 429


>gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 436

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 167/453 (36%), Gaps = 59/453 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                 +    DSR ++ G +FVA+ G + DGH F  +A ++GA   +V           
Sbjct: 19  GESTTFSGFCIDSREVKEGNVFVALRGGRHDGHDFAQEAFSRGAVGAIVQRGI------- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +      ++VD+T + L   A          ++ V G++GK++    +  +  + G   
Sbjct: 72  KVPKGKFYVLVDDTLEALRRIALYRRRLFTGRVIGVAGSAGKTTTKEMIAFLLSKIGKVC 131

Query: 145 F-------QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                   QIG   +I++F +D +                         + AS  G  ++
Sbjct: 132 KTPKNYNSQIGLPFSIANFEEDCQFWVVE--------------------MGASQKGDVKN 171

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            +   K      T +G +H++              +FE+ + +   A++    ++  E+ 
Sbjct: 172 LVKLAKPHVRVITAIGEEHLETFGCLDDVIVGNGEIFED-MQERDVAVLPKYVSHCYELK 230

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                    V++ G  G    L+      +K+ +T  VE  D      +P    + NAL 
Sbjct: 231 N--------VITFGEGGD---LQATNIKLSKEGITFQVE--DVSLSLRVPSLAVLENALC 277

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           + G+  A+G +   +  HL      P RF  +   S    I  D Y     S+   L ++
Sbjct: 278 SLGVLKALGYNWKELSHHLANFSPAPQRFHLIRKGS--FLIIDDTYNANPPSVRKALLSL 335

Query: 377 RTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
                 RI +   +   G   +   R +    A    D  I    + R    E +R    
Sbjct: 336 SLFDGYRIALLGDMLELGPMSEAYHREVGKLCAELGIDACIFYGTHMRFAYEECLR---- 391

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           HG+  +    ++ EA+R    ++ +  V++V G
Sbjct: 392 HGVLCY-HSSSKEEALRYLSSLIREGSVILVKG 423


>gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 466

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 147/416 (35%), Gaps = 42/416 (10%)

Query: 14  LINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++ +    +   E+ I N V  DSR ++ G++F A  G   DGH F+  A   GA A++
Sbjct: 8   VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVI 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS      D          +++V++T   L   A+         ++AVTG+ GK+S    
Sbjct: 68  VSRG----DCLTKAGPGKSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDI 123

Query: 133 VQ-------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +        +  + SG  + +IG   T+                    L    +  V  +
Sbjct: 124 LALCLQSRFKTLKTSGNYNNEIGLPLTL--------------------LQLDKTHQVAVL 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +     G         +  +   +N+ + H++   + +    AK  +   L      A+
Sbjct: 164 EMAMRGQGELLQLATIAQPSSALISNVEKVHLETLGSLENIARAKAEVMATL-GAGDFAL 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I  D    +E ++       +    GY       +++    +   ++ +   G+      
Sbjct: 223 INGDSPLLEEAVR---PYAAKKYRFGYSKSCDFRIEETIIKNQGIEIRLICLGQSEKLFL 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLP      NA+ AA +   +G+    +   L   +    R E +     G  I   Y  
Sbjct: 280 PLPSRRWAMNAVAAAAMAFLLGVPLEEIKSSLLNFNPGSKRLEIIPLPDGGKIINDTYNA 339

Query: 365 TSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              S+   L+  R +     +V     +   G    +G R +      +  D+ I 
Sbjct: 340 NPLSMINALETSRELQEKGKLVAVLGDMLELGDYEQEGHREVGHHAVKNQVDLLIC 395


>gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
 gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
          Length = 500

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 94/501 (18%), Positives = 159/501 (31%), Gaps = 69/501 (13%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+ + +           ++   V  D+R + +G +FVA+ G K DGH F  QA
Sbjct: 1   MIVLSLAEIADVVGGRLHRADPGAQVTGTVEFDTRELTSGGLFVALPGEKVDGHDFAAQA 60

Query: 64  IAQGAEAIVVSSAYS-----LQDFSATIRSNTPILVVDN---------------TRKFLS 103
           +  GA A++ +         +   +A       + +  +                R  + 
Sbjct: 61  VEAGAVAVLAAREVDAPAIVVPPLAAGEAHERSVALTGDKDGSGAAVLAALAKLARYVVQ 120

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A          ++ VTG+SGK+S    + Q+ +  G +    G  +            
Sbjct: 121 RLAEGEL-----TVVGVTGSSGKTSTKDVIAQLLEPLGPTIAPPGSFNNELGHPWTALRA 175

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                +L   LS             A   G   H         G   N+G  H+    ++
Sbjct: 176 GAETRHLVLELS-------------ARGPGHIAHLAAIAPPKIGVVLNVGSAHVGEFGSR 222

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +     K  L E L P++  A++  DD     +  R       V       +        
Sbjct: 223 EGIAKTKGELVEAL-PEDGVAVLNLDDPLVAAMASRTKARVVFV-GESPSAQVRAENITL 280

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               +    +     +     PL GE  V NAL AA + + +G     +   L  L    
Sbjct: 281 DDEARASFRLITPAGEAGVKLPLHGEHHVGNALSAAAVALELGATPEEIATRLSALERRS 340

Query: 344 GRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKR 399
            R   V T   G  I  D +     S+   LK +  +   T  R   V G  G+      
Sbjct: 341 ARRMEVVTRPDGVTILNDSFNANPESMRAGLKALAAMTRETGRRSWAVLGVMGELGADSV 400

Query: 400 PIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIE 447
               +I      L++A + ++         PE   A +  G               +   
Sbjct: 401 TAHDEIGRLVVRLNIAKLVVIG--------PEA--AAMHQGAHQEGSWGEESTLVPDVEA 450

Query: 448 AIRTAIEMLNKQDVLVV-AGK 467
           A     + L   DV++V A K
Sbjct: 451 AAALLHDQLRPGDVVLVKASK 471


>gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
 gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
          Length = 459

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 172/460 (37%), Gaps = 41/460 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +QAG +FVA+ G + D H F+ QA AQGA A +     +         +  P 
Sbjct: 27  VHTDTRSLQAGDLFVALKGERFDAHDFLAQAKAQGAVAAIAHHGLA--------AAGLPG 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +++  L   A+    +    ++AVTG++GK++V   +  I +    +       +T
Sbjct: 79  LEVADSKLALGQLAAGWRSQFSLPLIAVTGSNGKTTVTQMIAAILRAWKSTQAF----AT 134

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +   D  +           L   +S  V  V +  +  G   +     K       N 
Sbjct: 135 EGNLNNDIGVP-------LTLLRLRASHAVGVVELGMNHPGEIAYLAALAKPGVALVNNA 187

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H+++  T +A       +  + L  +  A+  ADD Y+     R      RVL+   
Sbjct: 188 QREHLEFMATVEAVARENGSVL-QALGTDGIAVFPADDDYTAIW--RGLAGARRVLTFAQ 244

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G      +     +  QV         DF   + G   V NAL A    +A G+   ++
Sbjct: 245 TGPADVTAQAQWSGDCWQVAARTPAGPLDFPLHIAGRHNVKNALAATACALAAGVPLPVI 304

Query: 333 LEHLEKLHVVPGRFEFVGTN--SRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
              L +   V GR   +     +R   +  D Y    +S+   ++ +  + + R++V+  
Sbjct: 305 AAGLSEFAPVKGRSRALTVRLANRVVTLIDDTYNANPDSMRAAIEVLAELPAPRLLVMGD 364

Query: 390 CGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446
            G   DQG       G+ A       + T         +  RA    G    F +  +  
Sbjct: 365 MGEVGDQGPQFHEEAGRYAHARGIEQLFTLG------AQSQRASTAFGAGRHFSQMADLA 418

Query: 447 EAIRTAIEMLNKQDVLVVAG----KGHETVHIVTNGEKKM 482
            A+   +        ++V G    K  + V ++ +  K  
Sbjct: 419 AAVVAELPQAGS---VLVKGSRFMKMEQVVQVIADHTKNY 455


>gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 453

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 149/396 (37%), Gaps = 32/396 (8%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K+  E++   SI         I E+  DSR ++ G +FVA+ G + DGH F  +A + G
Sbjct: 6   LKELAEVLQGHSI----GDNVPITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEAQSHG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++      ++          P +VV +TRK L   A+ +  +    ++A+TG+SGK+
Sbjct: 62  AVGLLSECLLPIK---------LPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SV      I ++SG   +  G          +       P+ L   L          + +
Sbjct: 113 SVKEMTAAILRQSGHVLYTKG----------NFNNRIGVPLTL---LRLTPEHDFAVLEL 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            AS  G         +      TNL + H+    + +    AK  +   L P    AII+
Sbjct: 160 GASQPGDIADTAALSRPENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPT-GTAIIH 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           A      +          R+   G +           +  +      T+           
Sbjct: 219 ATSHDWPKWKSVFRGK--RLWRFGLEKGKEVDFFASHLSKMPLATDFTLHSPLGSQKIYL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   V NAL A+ L I++G D + + + L +L  VPGR   +        +   Y  
Sbjct: 277 PLPGLHNVLNALAASALAISVGADLSAISKALSELKPVPGRAFPMILGPGKLLLDDTYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
              S+    + +  +   R++VV       +Q K  
Sbjct: 337 NVGSMIAATEMMSNMPGYRVMVVGDMAELGEQSKNC 372


>gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
 gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
          Length = 461

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 91/494 (18%), Positives = 180/494 (36%), Gaps = 41/494 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ L  K+  E  ++ ++   +  E  +  +  DSR  +    FVAIVG   D H +I  
Sbjct: 1   MERLTVKEIVE-ASKGNLKNGEGSE-SVKAIVIDSRLAKEDTAFVAIVGENNDAHKYIGS 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   G    +V+    +      I+S+  I+ VD+T K L         K     + +TG
Sbjct: 59  AYDLGCRVFIVNKGKDID-----IKSDMNIIEVDDTSKALGDIGHYYKKKFDILFIGITG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    V                 +T+ +  ++       P+ L    +  SS   
Sbjct: 114 SVGKTTTRDMVYAALSS---------ERATLKNE-KNFNNHFGVPLTL---FNLDSSYEC 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  ++  + +       +N+G  H++   +Q+  F AKM +    + K +
Sbjct: 161 AVIEMGMSGFGEIEYLANMVNPKVAVISNIGLSHVENLGSQEGIFKAKMEITTGFV-KGN 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             ++  DD +   +  R       +++ G++    I+        +  +   SV G    
Sbjct: 220 TLVVNGDDKFLSTL--RDAERDYDLITFGFEKNNDIYCVAYDMTEDSIEFECSVMGNIEK 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G+  +YNA+ A  +    GI    +   L        R +          I   
Sbjct: 278 IFIPTVGKHNIYNAMAAIAVGTVEGISMEGIKRGLSNFEATGMRQDIRKI-GEYTVINDT 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDN 419
           Y  + +S+E  L  +      RI V+       D  +     +GK  +D +D+ I   ++
Sbjct: 337 YNASPDSMEASLSILGRYEGRRIAVLGDMLEMGDLAEFGHRRVGKACVDNSDVIITVGES 396

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVTNG 478
               + E    E    +       N  +A +   E++   D ++  A +G          
Sbjct: 397 AVFINKEA--EENGFDVKNSYHFDNLEDAKKLLGEIMQSGDTMLFKASRGM--------- 445

Query: 479 EKKMSVDCDIIREI 492
             K     + ++E+
Sbjct: 446 --KFEKFVEYVKEV 457


>gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
 gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
          Length = 425

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 169/441 (38%), Gaps = 48/441 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I+   +F A+ G+  +G+ +  +A+ +GA   +V              ++   
Sbjct: 16  VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGASYSIVDEE--------KYATSDKT 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +  + L   A+     +   ++ +TG++GK++    V  +      +   IG    
Sbjct: 68  ILVKDVLQTLQKLATFHRNFYSAKVIGLTGSNGKTTTKELVNAVLSSKYKTIATIG---- 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L+      +  V + A+     +      +   G  TN 
Sbjct: 124 ------NLNNHIGVPLTL---LTIKEDTEIAIVEMGANHQKEIEFLCSLAQPDYGYITNF 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ LL  +    + ADD        +    G  +   G+
Sbjct: 175 GKAHLEGFGSVEGVIEGKSELYDYLLANQKSIFLNADDP------IQHKKLGHYIKKYGF 228

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   K+  + +   V++SVE  D +    L G +   N   A  +     ++   +
Sbjct: 229 TTAKKEYFKIKFLISDPYVSLSVE--DIEINSKLIGNYNFTNCCAAVLMGKYFNVELNDI 286

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
              +E       R + +   S G RI +D Y     S+++ L+N  +++    I   G  
Sbjct: 287 KTAIESYIPQNNRSQII--ESNGTRIILDAYNANPTSMKVALENFNSLSGEPKIAFLGDM 344

Query: 392 GDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEK----------IRAEI-IHG 435
            +           IA     LD++++ +V D+  R++ P K            A++ +  
Sbjct: 345 FELGATSNEEHQNIADLTSSLDISEVFLVGDNFYRTKTPLKKFKNYEALALYLADVELPS 404

Query: 436 IPGFIEKGNRIEAIRTAIEML 456
               + KG+R  A+   +E+L
Sbjct: 405 NSTILIKGSRGMALERLLELL 425


>gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
 gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
          Length = 454

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 167/408 (40%), Gaps = 35/408 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L  K   EL N  +I   ++ +  +  +S+D+R IQ   +F+A+ G+  DG  +I
Sbjct: 1   MLTRNL--KTITELTN--TIINEKYHDVMVKGISTDTRTIQKDNMFIALRGDNFDGQNYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   VV+  Y   +       + P++ VDNT++F+   A          ++A+
Sbjct: 57  EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYISSLDCKVIAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +       +     T  ++  +  L+                 
Sbjct: 110 TGSNGKTTTKDIMSSLLKE------KYKVVKTQKNYNNEIGLS-------KTIFDIDDDT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +   + G  +   +         TN+G  H+   +T++    AK  + E L  +
Sbjct: 157 EVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGL-KE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
           +   I+  DD   +EV K+ +    + +++G +      ++ + A       +I+    D
Sbjct: 216 DGIFILNNDDPILREV-KQEYKLPEKTITLGIKPDSDYRMEMIKADETGSTFSIN----D 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   L G  Q+YNA ++  +   +G+D + + + L+ + +   R E +  +     I 
Sbjct: 271 HVFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELILLDK--FHIL 328

Query: 360 VD-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
            D Y     SL   L+    +    R I V G   +    +  +   I
Sbjct: 329 NDSYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNI 376


>gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
 gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
          Length = 450

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 172/458 (37%), Gaps = 58/458 (12%)

Query: 11  FPELINQLSIFPMQWRERKINEVS----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +L+  L   P+   E  + +VS    +D+R I+ G +F+A+ G   DGH F+  AIAQ
Sbjct: 7   ISQLLEVLCAQPINLSEAALTQVSSTIQTDTRRIKPGEVFLALRGENFDGHDFVSHAIAQ 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +V S Y          ++  +L V +T +           +    ++ VTG+ GK
Sbjct: 67  GAIAAIVDSDYE--------NADVAVLQVRDTLQAYQQLGRWWRDRLNIPVIGVTGSVGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +    G          T  +F  +  +           L   +      V 
Sbjct: 119 TTTKELIAAVLATEGRVH------KTFGNFNNEIGVP-------KTLLELDTEHDYAVVE 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G  +      +   G  TN+G  HI+   +++A   AK  L  E +P++S AI+
Sbjct: 166 MAMRGEGQIRELTQIARPNIGVITNVGTAHIELLGSEEAIARAKCELLAE-MPEDSVAIL 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+       ++  +    V++ G  G  I                +++  +     PL
Sbjct: 225 NHDNPLLMATAQQVWSG--EVVTYGLSGGDIQGVLTDNQ--------TIKVGEMRLPLPL 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     N L A  +   +GID + +   + K+++  GR +          +   Y    
Sbjct: 275 PGRHNASNFLAALAVAQVLGIDWSTLQNGV-KVNMPTGRSQRFTLPHDIILLDETYNAAP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRS 422
            ++   L+ +      R I V G   +  +    +  ++   +     D  +V  D    
Sbjct: 334 EAMTAALQLLADTPGKRKIAVLGAMKELGERSLQLHQRVGETVQRLQLDGLLVLVD---G 390

Query: 423 EDPEKIR--------------AEIIHGIPGFIEKGNRI 446
           +D + I               A+++  +  F++ G+RI
Sbjct: 391 KDAQAIAQSAEGIPSECFTTHADLVARLKTFVQAGDRI 428


>gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 448

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 158/425 (37%), Gaps = 42/425 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   L+     + +   ++  S +S+++    +F+ + G++ DGH F
Sbjct: 1   MNL------WLSEIAKALNGEIKNFSDDILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118
           + +A+  GA + +    +             P + V +T   L   AS +  K     ++
Sbjct: 55  VEEALQNGAISFISQKEFK--------NVRVPYVKVKDTLVALQDLASYVRDKLKGLTVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK+S   ++  +        ++        +F                 L+   
Sbjct: 107 GVTGSVGKTSTKEYIFNVLN------YKYKTFKNQGNFNNHIG-------LPFSILNMPE 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +    +  S+ G         K   G  TN+G  HI+  +++   F AK  + +  +
Sbjct: 154 DTQIAVFEMGMSNFGEISKLSQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDG-M 212

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   II  D+               R++++G + +     K    H       S E  
Sbjct: 213 ADDGMLIINNDNDILNLHKGELKK---RIITIGIENESHFRAKNVQRHQNG---FSFEVD 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           ++ +         +YN+L A  + I +GID  L+ E + +   +  RFE +   S    +
Sbjct: 267 NYTYFIESFNFHDIYNSLFAIAVGIILGIDRQLIKEAIRRKERLKRRFEIIQKGS--ITV 324

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y  +++S+   + +I      +I+V   +   G   ++  R +   I     D+ I
Sbjct: 325 IDDTYNASTHSMLSAIDSICEFDGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384

Query: 415 VTDDN 419
            T  +
Sbjct: 385 CTGKD 389


>gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016]
 gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 474

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 183/476 (38%), Gaps = 48/476 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ + + D    ++   I   +++  K   +S+DSR +Q G IF+A+ G K +G+ ++  
Sbjct: 12  LEHMSFDDIVRAVSGKVILKGKYKGHK--NISTDSRKLQKGDIFIALKGEKFNGNEYVES 69

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  +GA   +V     ++  S  I   T I+ V N    L   A     K    I+ VTG
Sbjct: 70  ASKKGASICIVD---EVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTG 126

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +  +           G    +     +       P  L K  +   S  V
Sbjct: 127 SVGKTTTKDIIAAVL----------GVKFKVFKTEGNFNNQIGLPHMLFKLDN---SYEV 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +  G   + +   +      TN+ R HI    +++   NAK+ +  +   KE+
Sbjct: 174 AVLEMGMNQRGEIHNMVKAARPDIAVITNVLRAHIGNLGSRKNILNAKLEI-TDFFSKEN 232

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG--KD 299
             II +D+    +++         +  VG  +   +    +    +  +  +       +
Sbjct: 233 TLIINSDN----DLLSTLEEKNFTLNRVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTE 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             FL  +PG++ + N+L+A      + +    + E ++ + +   R E +    +   I 
Sbjct: 289 ERFLINMPGKYNIVNSLLAISCGRLLNMSYDEIREGVKNIKLTSMRMEII--RKKEFTII 346

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAI 414
            D Y     S++  +  ++   S R I V G  G+  +    +  ++         D+ I
Sbjct: 347 NDCYNANPESMKAAIDVLKEFKSNRKIAVLGTMGELGEEAYKMHQEVGMYAGEKDIDLLI 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIR-TAIEMLNKQDVLVV 464
              +          + +   G     +KG     ++ E ++   ++ + + D ++V
Sbjct: 407 GIGEY---------KKDFERGFKSTNKKGNFMGFDKYEDLKDFILKYIERGDTILV 453


>gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
 gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
          Length = 463

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 86/419 (20%), Positives = 143/419 (34%), Gaps = 38/419 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  E +   S  P    + +I  V  DSR ++ G +F  I G   DGH F+
Sbjct: 1   MKLT---LCELEEQLMGSSDLP-SAADIEIAAVRIDSRLVKKGDVFFCIEGENFDGHNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A+VVS              + P ++V +T + L   A+    K    ++AV
Sbjct: 57  QQAFDAGAVAVVVSQFMPE-------FEDKPTIMVKDTVQALGRVAAYWRMKSHARMIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  +   SG                   +        L   LS L + 
Sbjct: 110 TGSAGKTTVKEMLAHVLSGSGSVH----------------KNFMNLNNQLGLPLSMLEAT 153

Query: 181 GVTHVSVEASSHGL--DQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           G     V      L  D   L  I +       N+G  H++   + +   + K  LF+ +
Sbjct: 154 GEETYWVMELGISLPHDMGELGPIAQPDMAIVHNIGPAHLEGLGSLENVADQKSSLFKYI 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P E  A+   D     E   +         S     ++             +  I    
Sbjct: 214 RP-EGVALCCKDHELLWEAANKISKP-VPFSSQDENAEYYSTLLHTLPDGSGRFLIKAGE 271

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  + + P  G     NA         +G++   + E L  + +   RF    T+ +   
Sbjct: 272 ETAEVILPTCGSHFAENAAAVTCAAHQLGMELTEIAERLATVELPKQRFHC-HTHGKWTL 330

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLAD 411
           I   Y     S+   +   + I   R +V     +   G +       +  KIA    D
Sbjct: 331 IDDSYNANPLSMNRAIDTAKRIADDRPLVLVLGDMLELGEEAGCAHCDLGSKIAETKPD 389


>gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 442

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 86/434 (19%), Positives = 156/434 (35%), Gaps = 34/434 (7%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S D+R   AG ++ A+ G   DGH FI  A+ + A A+VV  AY +             L
Sbjct: 27  SVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRASALVVERAYGVPG----------EL 76

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           VV +T + L    +         ++ VTG++GK++    +  +         ++    T+
Sbjct: 77  VVPDTLRALQNLGAWARRNWGGTVIGVTGSAGKTTTKDAIAHLLAS------EMPVGKTV 130

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
            +F     +            + +   G+ H        G  +      +   G  TN+G
Sbjct: 131 GNFNNHVGVPLSLLRLPDGCRAGVIEMGMNH-------SGEIRELGAIARPEIGVVTNVG 183

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             H+++  + +    AK  L E L P +  A++ ADD     V   +     R ++ G  
Sbjct: 184 YAHVEFFDSIEGIALAKRELIEGLTP-DGVAVLNADDP---RVAGFSAVHPGRSITFGLS 239

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                  +  A H          G +F+    L G   V N L A  +    GI  A + 
Sbjct: 240 EHAEIRAEDVAAHAG-GTRFRALGMEFE--TGLSGRHAVMNLLAAIAVATVFGIAPARMR 296

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           + +        R E   T   G  I+ D Y     + + ++  +R   + R I V G   
Sbjct: 297 DAVASFAAGKMRGER--TEHNGIVIWNDCYNSNPEAAQSMIDVLRETPARRRIAVLGEML 354

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +       +  ++    A+  +      R      + +    G+     + +  EA   A
Sbjct: 355 ELGHAADELHRQVGRYAAEHGVDLLIGVRGAARAMVESAARAGLDARFFE-DPAEAGDRA 413

Query: 453 IEMLNKQDVLVVAG 466
            E+ +  D ++  G
Sbjct: 414 RELAHAGDAVLFKG 427


>gi|307111173|gb|EFN59408.1| hypothetical protein CHLNCDRAFT_137921 [Chlorella variabilis]
          Length = 873

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 111/569 (19%), Positives = 191/569 (33%), Gaps = 113/569 (19%)

Query: 20  IFPMQWRERKINEV-SSDSRHIQAGWIFVAIVGN--KEDGHLFIPQAIAQGAEAIVVSSA 76
           +      +  I  + + +S       ++V +     + DGH +  +A   GA A++    
Sbjct: 280 LQAASAPDVDIRNILTCNSISGGEDSLYVCVPSADGQCDGHDWADEASEMGAVAVIAGRP 339

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
                    +  +            L   A   Y +    +  + V G+ GK++ A   +
Sbjct: 340 LPDALLPVVVVDDV--------AAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLSR 391

Query: 135 QICQRSGLSSFQIGPTS---------------------------------------TISS 155
            + + +      IG                                          T   
Sbjct: 392 GMFEETAERCGMIGTIEYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYE 451

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN-LGR 214
                  TTP  +++ KAL+  + +G +   VE     L   R D +      +TN    
Sbjct: 452 GKYPQVPTTPDALHMQKALAGCADRGASVALVECDPASLGDGRADHVDFDVLVYTNSYAE 511

Query: 215 DHIDYHQTQQAYFNAKMRLFEELL--PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
                    QA  +    LF  +    +   A+I  DD    E+ + A  AG  VL+   
Sbjct: 512 KEAGAEGGSQACHDRVAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSA 571

Query: 273 Q--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 I+ +K  +   + +V ++        + PL G   V N L A    IA G+   
Sbjct: 572 DSRDADIYAEKAKSSIWETEVLVNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLK 631

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            ++  +E + ++PGR E +    +   + VD A T   L  +L  ++   S R+++VFGC
Sbjct: 632 NIVAGIEAVDIIPGRCEIID-EGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGC 690

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------------- 437
                    P    +A    D   +T+D+P +  P  + A+++ G+P             
Sbjct: 691 ---------PGTTSMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGTAYP 741

Query: 438 -----------------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                                  G     +R +AIR AI M   +DV+VVAGKGH     
Sbjct: 742 FLQDPHRVPHWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQE 801

Query: 475 VTNGE----------KKMSVDCDIIREIL 493
             +G           K    D    R  L
Sbjct: 802 YWDGAEFDLEERTTLKSWFDDRVECRNAL 830


>gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
 gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
          Length = 425

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 155/440 (35%), Gaps = 46/440 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I    IF A+ G   +G+ F  +A+++GA   VV       DF    R     
Sbjct: 16  VSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVDEG----DFPDEPR----C 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +    L   A     +    I+ +TG++GK++    +  +  +   +    G    
Sbjct: 68  IRVPDALAALQQLAMHHRLQCKARIIGLTGSNGKTTTKELIAAVLSKKYRTLATRG---- 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L       +  V + A+  G  +   +  +   G  TN 
Sbjct: 124 ------NLNNHIGVPLTL---LRIAPETELAIVEMGANHQGEIRLLSEMAQPDFGYITNF 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  L+E L+ + +   + ADD    E +    N       VG+
Sbjct: 175 GKAHLEGFGGVEGVIRGKSELYENLMERGATIFMNADDPVQFEKLAGYANC------VGF 228

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +     ++  + +   V + V+  D      L G +   N  V+A +    G+ +  +
Sbjct: 229 STRNPAYMQIKNLTDGPAVRLQVD--DVVVQTQLTGRYNFSNCAVSACIGKHFGVPAEAI 286

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV----F 388
            E LE       R + +        +   Y     S+   L+N+  + S R I +    F
Sbjct: 287 AEALESYIPANNRSQLI-ERGNLRILLDAYNANPTSMAAALENLAEMDSPRKIAILGDMF 345

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDN--------PRSEDPEKIRAEIIH----GI 436
             G +       +         +   +   +         R  D   +  E+      G 
Sbjct: 346 ELGAEAAAEHEAVGRFALSKNPEKLYLVGQHFYDTALPAARFPDFAALSRELKANPLTGP 405

Query: 437 PGFIEKGNRIEAIRTAIEML 456
              + KG+R  A+   +E L
Sbjct: 406 ATVLIKGSRGMALERVLEFL 425


>gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
 gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
          Length = 454

 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 148/395 (37%), Gaps = 27/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            ++  I+ VSSD+R +  G +F+A+VG + D H F+  A   GA A++VS    +     
Sbjct: 19  GQDVTIDAVSSDTRTLGKGALFIALVGERFDAHDFVETAKQNGASALLVSKVVDI----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P LVV +T+  L    + +  +     +A+TG+ GK++V   +  I  + G + 
Sbjct: 74  ----DLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTGSCGKTTVKEMLAAILSQKGQTL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L          + + A+  G   +    +K 
Sbjct: 130 Y------TAGNFNNDIGVP-------LTLLRLTPFDDYAVIELGANHIGEIAYTTSLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL   H++   +      AK  +F+ L      AI+  D               
Sbjct: 177 DLALVTNLAAAHLEGFGSLDGVAQAKGEIFQGL-SDGGVAIVNQDSNGGDFWTPALEGKQ 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              ++V  +      + +  I N      +      +     LPGE  V NA++AA    
Sbjct: 236 VLTMTVTGKPADYRAENIHHIDNGCCAFDLVSPDGVYPVRLSLPGEHNVANAVLAAIAAT 295

Query: 324 AIG--IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            I   +    V+  L  +  V GR            I   Y  +  +++  +  + +   
Sbjct: 296 KIDSRVTMDDVVRGLGSVSPVKGRGAISFPRPGLRLIDDSYNASLAAMKAAVDLLDSF-D 354

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           G  I+V     +  +    +   +A+ L++ +I T
Sbjct: 355 GDKIIVLADMAEMGEHTDSVHEDVAMHLSNASIQT 389


>gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 170/489 (34%), Gaps = 58/489 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      EL+       +  + ++ +  +S DSR ++   +FV IVG + D H F+ QAI
Sbjct: 1   MTGITVKELLEATGGNLLHGQEDQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNT-------------PILVVDNTRKFLSLFASRLYG 111
           A GA  +  S  +  +D  A +R                  + V +T+K L    S    
Sbjct: 61  ASGAAVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRK 120

Query: 112 KHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                ++ +TG+ GK++    +        ++ +  G S+ Q+G   TI+          
Sbjct: 121 SLSLPLVGITGSVGKTTTREMIAEALSAGFKVYKTPGNSNSQVGVPITIA---------- 170

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                    +   +  GV  + +          R+   ++     TN+G  HI+   +Q+
Sbjct: 171 --------EIPQSAEIGVIELGMSEPGEMERIARVA--RVDCAVMTNIGIAHIEQLGSQE 220

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                K+ + E  +P E    +  DD     V+ +       +  +G    +   + +  
Sbjct: 221 CILEEKLHIQEG-MPPEGILFLNGDDPLLASVVPK-EGRKKVLYGLGRDCDY-RAEDLHL 277

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                  T             + G   V NA+ A  +    G+        L +     G
Sbjct: 278 EEGYPVFTAVHGDCRVRVRLKVMGSHMVSNAMAALAVADTYGLSMEKAALALGQFKGYKG 337

Query: 345 RFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKR 399
           R +       G  +  D Y  +  S++  L+ + ++   R I V       G D ++   
Sbjct: 338 RQQIF--EWGGVTVIDDSYNASPVSMKAGLEVLDSVKGERKIAVLADMKELGPDTERFHA 395

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLN 457
            I   I     D+ ++       E    I +  +        IE  +  +A +   E + 
Sbjct: 396 EIGAYIGEHPLDMVLLL-----GELAACIGSGMDAARAATPHIEIDSLAQAEKWLDENIR 450

Query: 458 KQDVLVVAG 466
           + D ++  G
Sbjct: 451 EGDCILFKG 459


>gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
 gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
          Length = 473

 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 96/489 (19%), Positives = 188/489 (38%), Gaps = 50/489 (10%)

Query: 6   LIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I+K    + +    ++   Q     I  V +DSR IQ G +FV IVG K DGH F+   
Sbjct: 1   MIHKSLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESV 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A GA A      +        + ++ P+++V++T K L   A+    +    ++ +TG+
Sbjct: 61  LASGAGAAFWQRDHQ------PVPADLPLILVEDTLKALQSLAAVYLSESRAKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V   V  + +           T  +     +       P+ +   L+      + 
Sbjct: 115 NGKTTVKDMVSALLE----------TTYNVHKTQGNYNNHIGLPLTV---LAMKEDTDII 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S     +   +  +      TN+G  H+    +++    AK+ +   + P    
Sbjct: 162 VLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREEIARAKLEIISGMKP-GGL 220

Query: 244 AIIYADDAYSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            I + D+   ++V+           R  + G Q            H +  +  S      
Sbjct: 221 LIYHGDEPLIRQVLAEEETVKPEGLRTYTFGNQDTNDDYPTGLMFHARGIIFTSRLHAGE 280

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  PL G   V NAL A  +   +GI    +      L +   R E V T + G  +  
Sbjct: 281 GFSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFAHLKLSSMRIEAVET-AFGVTVLN 339

Query: 361 D-YAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
           D Y  +  +++  +  +  +    R I V G     G R++     +G  ++ D AD+  
Sbjct: 340 DAYNSSPTAVKAAVDVLGDMKGYRRRIAVLGDMLELGQREESFHAEIGDYLSPDNADLVF 399

Query: 415 V-------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
                   T +  ++  PE             +   ++ + I   +E + ++D+++V A 
Sbjct: 400 TYGPLSLHTANKAKARFPEG----------AVLSFTDKEKLIEALLEQVTEKDIVLVKAS 449

Query: 467 KGHETVHIV 475
           +G    H+V
Sbjct: 450 RGMRLEHVV 458


>gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
 gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
          Length = 444

 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 134/380 (35%), Gaps = 28/380 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R I    IF A+ G K +G+LF  +A+ +GA  +VV    +LQD          I
Sbjct: 31  VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVVDEPQNLQD--------DRI 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V N  + L   A          ++ +TG++GK++    +  + Q      +  G    
Sbjct: 83  ILVKNGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQEKFQVHYTQG---- 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   LS   +  +  + + A+     +      +   G  TN 
Sbjct: 139 ------NLNNHIGVPLTL---LSIPENAQIAVIEMGANHLKEIELLSSIAQPDLGYVTNF 189

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++     +     K  L+  L       +I ADD    +  K   +      +   
Sbjct: 190 GHAHLEGFGGFEGVVKGKSELYNFLHEHHKTVLINADDPLQLQQAKAVESQISFSKNEST 249

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           Q  +    K    +  Q V      +D      L G +   N   A       G+    +
Sbjct: 250 QATYCIELKENVNNKIQVVV-----EDVVIRSNLTGNYNWSNVAAAISFGKHFGLSPKEI 304

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              +E  +    R + +    +   +   Y    +S+E  L N  T   G   V+ G   
Sbjct: 305 KNGIENYYPANHRSQLIQ-KDKYTLLMDAYNANPSSMEASLNNFSTF-DGSKTVILGDMF 362

Query: 393 DRDQGKRPIMGKIALDLADI 412
           +  +  +    KIA    D+
Sbjct: 363 ELGESSKVNHQKIAQLTKDL 382


>gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Brevibacillus brevis NBRC 100599]
          Length = 460

 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 82/404 (20%), Positives = 157/404 (38%), Gaps = 27/404 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           IN   I         ++ V  D+R +  G +FVA+ G   DGH F+ QA  QGA A +VS
Sbjct: 11  INAEGILIAGSPGLALSSVHFDTRELTVGSLFVALTGGARDGHDFLLQAAEQGAVAALVS 70

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              + +     + ++  +++V++T +     A+          +A+TG+ GK++V   V 
Sbjct: 71  ---NQEKIPGDLPNDFGLILVNDTLRGFQKLAAAYRKSFSFPRIAITGSIGKTTVKDIVA 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +               T  +F           I +  +L  +       V     +H  
Sbjct: 128 HVLASRSP------VYKTYKNFNNH--------IGVPLSLLQMEENHQAAVLELGMNHAG 173

Query: 195 DQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +   L   ++      T +G  HI+Y  T++    AK  L       +   ++  D  Y 
Sbjct: 174 EIDLLASLVQPDISVITFIGESHIEYFGTREKIALAKAELLPH-TALDGLVLLNKDSEYL 232

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQV 312
           + ++   +       SV  +      +++  +    +  + +  G+ F+   PL G   V
Sbjct: 233 R-LIAHLYPGELMYYSVNEKADIW-AEQIETVEGGTRFKVYLASGEYFEAFLPLHGRHSV 290

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT--SNSLE 370
            NAL A  +   +G+D+  +   L  + +   RFE +  N +   +Y+  A+     S+E
Sbjct: 291 LNALPAVAIAKRLGMDTEQIAYALSTVQLSAMRFEQI--NGKHATVYISDAYNASPVSME 348

Query: 371 MILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             ++    +      IVV G   +     R +   +   + DIA
Sbjct: 349 AAVRTFAELYPECARIVVLGDMYELGPDSRAMHAGVGASIQDIA 392


>gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
 gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
          Length = 459

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 178/484 (36%), Gaps = 56/484 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++      +     ++  +     ++  V+ DSR I+  W+F+ I G + DGH FI
Sbjct: 4   MSLQEITAACHGQYFGGEAVSHI-----EVAGVAIDSRKIEKDWLFIPIKGARVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + +GA   +      L++ S       P ++VD+  + L   A          ++ +
Sbjct: 59  PQVMEKGALCTLSE--VVLENVSH------PYILVDSCEQALKDIAEHYRKALDIKVVGI 110

Query: 121 TGTSGKSSVASFV-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG+ GK+S    +         + + +G  + +IG   TI +                  
Sbjct: 111 TGSVGKTSTKEMIASVLEQKYHVLKTAGNFNNEIGLPLTIFNIRD--------------- 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   +  + +  +  G         +      TN+G  H++    +     AK  +
Sbjct: 156 -----EHEIAVLEMGINHFGEMHRLAKMARPDICVITNIGLCHLENLIDRDGILKAKTEM 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+ + P ++  I+  DD     V             +  +                  T+
Sbjct: 211 FDFMQP-DAKIILNGDDDKLITVTD-VKGQTPMFFGLSTELDAFADNIHTHSLKGVSCTL 268

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +     D + P+PG   VYNAL  A +   +G+ +  + + +E L  V GR   + T+S
Sbjct: 269 HLGDNCIDTMIPIPGNHMVYNALAGALVGRELGLTAEEIKKGIESLTPVSGRNNMILTDS 328

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDL 409
               I  D Y     S +  +  +    + ++ +   +F  G D  +  R +    +   
Sbjct: 329 L--LIIDDCYNANPVSTKASIDVLSGAETRKVAILGDMFELGEDEKELHRQVGVHASEKG 386

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
            D+ I   +   S+       E+  G  +  F  K +         E+L+K D ++V A 
Sbjct: 387 IDLVICIGE--LSKATAAGAEELSAGNQVVHFDTKADFF---TKMNELLHKDDTILVKAS 441

Query: 467 KGHE 470
            G E
Sbjct: 442 HGME 445


>gi|56964124|ref|YP_175855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
 gi|56910367|dbj|BAD64894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
          Length = 453

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 145/387 (37%), Gaps = 41/387 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R  + VS+D+R      +FV + G + DGH FI QAI  GA   +       +     + 
Sbjct: 22  RGFSGVSTDTRQRMENGLFVPLKGERFDGHRFIEQAIEAGATGALW---KEQEPVPEQLP 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRS 140
               +  V++T K L   A     K    ++ +TG++GK++    V  +        +  
Sbjct: 79  ETFQLYYVEDTLKALQALAQAYREKVNPFVIGITGSNGKTTTKDIVASVLAGTAAVHKTK 138

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  +  IG   T+ +  +D                         V +  +  G       
Sbjct: 139 GNLNNHIGVPLTLLAMPEDCTY--------------------AVVEMGMNHAGEISTLTQ 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             K  A   T++G  HI++  +++    AKM + + L+ KES  +   D+       ++A
Sbjct: 179 IAKPNAAIITSIGDAHIEHLGSREGIAAAKMEIADGLI-KESWLLFDGDEPLLSPYNEQA 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +VG+  +    K       +      + G    +   + G+  V NA  A  
Sbjct: 238 ET------TVGFSDQA-ATKISDVKTLENGYVFYLNGAR--WQLTMLGKHNVKNAAYAIL 288

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L   +G  +A++ + L  L +   R E +   +    I   Y     S++  ++ ++ + 
Sbjct: 289 LAQKLGFSNAMIQKQLSSLAITGMRLEKLKGPNGSTIINDAYNANPTSMKAAIETVKELP 348

Query: 381 S-GRIIVVFGCGGDRDQGKRPIMGKIA 406
              R ++V G   +  Q +  +   +A
Sbjct: 349 HYKRRVLVLGDIYELGQDEEALHKSVA 375


>gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
 gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
          Length = 449

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 165/450 (36%), Gaps = 43/450 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  +  V  DSR I+   +FV + G + DGH F  QA   GA A + S        +  
Sbjct: 18  NETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHP------TIE 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +  ++ V +T K     A     K    I+ +TG++GK++    V+ +  +   +  
Sbjct: 71  PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYK 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +                  L                +     G  +      +  
Sbjct: 131 TQGNHNNELGVPLTILHAPEDTQVLILE-------------MGMDHAGEIEVLSRLAEPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A + T +G  HI+   +++    AKM +   L  K+   ++ AD+   +  +    N   
Sbjct: 178 AAAITLIGEAHIENLGSREGIAKAKMEITAGL-KKDGFFMMPADEPLLEPFV---PNLTQ 233

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            + + G       L+      ++ Q   +V G  F    P+ G + V NAL+A G+    
Sbjct: 234 TIETFGLTEGD--LQGDIVEESQDQTIFTVAGTTF--TLPVLGGYNVKNALIAIGIGRHF 289

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGR 383
           G+    + E L    +   R ++V T   G  I  D Y     ++ ++L + R +  +GR
Sbjct: 290 GVADEAIKEGLAHFQLTKNRTQWV-TAGNGAAILSDIYNANPTAMGLVLDSFRKLPLAGR 348

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            I V     +       +  ++A  L D   +  +       ++ + ++  + +      
Sbjct: 349 RIAVLADMLELGPDSAQMHEQMAAHLDDSFQLVFL-----YGKEMQALQKRLANTALADK 403

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +     + + I + IE L   D LV+ G
Sbjct: 404 VRYFAIDEKPQLIASLIETLEPSDSLVIKG 433


>gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
 gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
          Length = 454

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 166/408 (40%), Gaps = 35/408 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L  K   EL N  +I   ++ +  +  +S+D+R IQ   +F+A+ G+  DG  +I
Sbjct: 1   MLTRNL--KTITELTN--TIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   VV+  Y   +       + P++ VDNT++F+   A          ++A+
Sbjct: 57  EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYISSLDCKVIAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +       +     T  ++  +  L+                 
Sbjct: 110 TGSNGKTTTKDIMSSLLKE------KYKVVKTQKNYNNEIGLS-------KTIFDIDDDT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +   + G  +   +         TN+G  H+   +T++    AK  + E L  +
Sbjct: 157 EVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGL-KE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
           +   I+  DD   +EV K+ +    + ++ G +      ++ + A       +I+    D
Sbjct: 216 DGIFILNNDDPILREV-KQEYKLPEKNITFGIKPDSDYRMEMIKADETGSTFSIN----D 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   L G  Q+YNA ++  +   +G+D + + + L+ + +   R E +  +     I 
Sbjct: 271 HVFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELILLDK--FHIL 328

Query: 360 VD-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
            D Y     SL   L+    +    R I V G   +    +  +   I
Sbjct: 329 NDSYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNI 376


>gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 455

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 134/396 (33%), Gaps = 32/396 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL +L       LI+          +   + VS DSR I+AG +F+A+ G + DGH ++
Sbjct: 5   LKLSELTNALDARLISA---------DASFDGVSIDSRAIKAGQLFIALTGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V    +         S  P L+V +TR+ L    +       + + AV
Sbjct: 56  NEVAAKGAVAALVEREVA--------DSTLPQLLVKDTRQALGQLGALNRAAFTKPVAAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  I +  G      G  +                      L      
Sbjct: 108 TGSSGKTTVKEMLASILRTRGSVHATRGNLNNDLGVPLT-------------LLELAPEH 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + AS  G   + +   K       N G  H+      +    AK  + E L   
Sbjct: 155 SAAVIELGASRLGEIAYTVGLTKPHVAILNNAGTAHVGEFGGPEKIVEAKGEIIEGL-AA 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +  A++  DD        RA        ++       H   +           +      
Sbjct: 214 DGVAVLNLDDKAFGIWKTRAAGRKVLTFALSNTQADFHASDLATDARGCPAFNLHSPEGV 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G   V NA+ AA    A+G+    +   L  +  V GR       +    I 
Sbjct: 274 ERVQLNLLGTHNVANAMAAAAAAHALGVSLFGIATGLGAVQPVKGRTVAQLAKNGMRVID 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             Y     S+   +  +   +   ++V+   G   D
Sbjct: 334 DTYNANPTSMCAAVDILAGFSGRTVLVLGDIGELGD 369


>gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 83/500 (16%), Positives = 172/500 (34%), Gaps = 65/500 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+++       LI   +                DSR I  G +FVAI G + DGH ++
Sbjct: 4   MSLEEIAQAVQGRLIAGTAAIDTPVATSTFT----DSRQIVEGSVFVAIAGERVDGHDYV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
            +  AQGA A +V              +  P +VV++T   L   A     +      P 
Sbjct: 60  SKVGAQGAVAAIVDHEID--------GAGVPQIVVEDTVLALGALAKHNIERRRALETPF 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    ++ +    G +   +G  +        +        +L     
Sbjct: 112 TVIGITGSVGKTTTKDLMKALLAHIGPTIAPVGSFNNEIGLPLTSLKVHAETRFLVAE-- 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +    +         +G  H+    + +    AK  +  
Sbjct: 170 -----------MGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSPERIAQAKSEIIR 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-------NK 288
            L+P    +++ A+D +   +   A      V+  G          + A H       + 
Sbjct: 219 GLVP-GGLSVLNANDEHVAAMSAIAPG---DVMWFGLPQNNDGKPAISAQHVHCDELDHP 274

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +  + +G+  +    + G+  V NAL AA + + +G+    V   L  +  +      
Sbjct: 275 SFILDNGDGEHAEVTLGICGQHNVMNALAAASVAMRLGMSIGDVASALSDVTAISPHRMA 334

Query: 349 VGTNSRG---GRIYVD-YAHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKR 399
           V   ++      +  D +    +S++  L  +    +G       + V G   +    ++
Sbjct: 335 VSIVNKQETSFTLIDDSFNANPDSMKAGLDGLLRWKAGSESQPFRVAVLGAMLELGPDEK 394

Query: 400 PIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEA-- 448
            +    G+ AL+    A++T  +      + +   +  G     +        +  EA  
Sbjct: 395 DLHVGIGRYALEGGVDALLTVGSASDASLDALAGAMADGASSAGDASHVDWVHDIDEADS 454

Query: 449 --IRTAIEMLNKQDVLVVAG 466
              R A+E      V+++ G
Sbjct: 455 LVTRLAVEH--PGAVVLLKG 472


>gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
 gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
          Length = 458

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 99/472 (20%), Positives = 178/472 (37%), Gaps = 44/472 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + +L+         Q S F +   +  I  +++D+R IQ G +F+A+ G   DGHLFI
Sbjct: 1   MNVNELVTVLGSNFQKQKSYFNLSSFD-DIKVINTDTREIQKGDVFIALSGKNFDGHLFI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI +GA  +++      Q+           +VV +  K     A+    K+   I+A+
Sbjct: 60  REAIEKGASIVILE-----QEALVNSTYKVSHIVVGSALKAYQQIANWWRNKYKIPIIAI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +              G    +     +       P  L K      S+
Sbjct: 115 TGSVGKTTTKELIAASL----------GMYGQVHKTYDNYNNEIGVPRTLLKL-----SK 159

Query: 181 GVTHVSVEASSHGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +  +E     L++ RL    I+   G  TN+G  HI    +++A   AK  L  E +
Sbjct: 160 HHDYAVIEMGMRDLEEIRLLTKIIQPTIGIITNIGTAHIGRLGSKEAIAQAKCELLSE-M 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +S AI+  DD    +   R      + ++ G     I  K +         T+ VEG 
Sbjct: 219 SLDSIAILNNDDELLMKTAMRIWKG--KTITYGLNKGDIIGKLINDR------TLRVEGL 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +F    PL G     N L A  +  ++ +D     + + K+ +  GR +          +
Sbjct: 271 NFP--LPLSGRHNAINYLAALAVTKSLNLDWKKFTKQI-KVEMPQGRSQKNYLPGDIILL 327

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-----ALDLADIA 413
              Y     S++  L  ++     R I V G   +          ++     AL +  + 
Sbjct: 328 DETYNAGLESMKAALNMLKDTPGKRHIAVLGAMKELGVNSSQFHREVGETAQALGIDVLY 387

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLV 463
           I+  D      P  I+   I G+     I   +  +     I  +++ D ++
Sbjct: 388 ILIRDEEARAIPNGIKN--IDGVRNIKVICCLSPEKLFEQLINDISEGDRIL 437


>gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
 gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
          Length = 458

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 162/451 (35%), Gaps = 42/451 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I  G +F+A+ G + DGH ++ +  A+GA A +V    +      
Sbjct: 20  GEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVEREVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +  P L+V +TR  L    +    K    + A+TG+SGK++V   +  I +      
Sbjct: 74  --DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQA--- 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   ++ +   +       P+ L   L          + + AS  G   + +   + 
Sbjct: 129 ---GDAESVLATRGNLNNDLGVPLTL---LQLAPQHRSAVIELGASRIGEIAYTVGLTRP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H+      +    AK  + E L   +  A++  DD        RA+   
Sbjct: 183 HVAIITNAGTAHVGEFGGPEKIVEAKGEILEGL-AADGTAVLNLDDKAFATWKARANGRP 241

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+       H   +           +     +      L G   V NAL AA    
Sbjct: 242 LLTFSLEQAQADFHAADLQRDARGCMGFRLHGVAGEAQVQLNLLGRHNVANALAAAAAAH 301

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A+G+    ++  L+ L  V GR     T S G R+  D Y     S+   +  +   +  
Sbjct: 302 ALGVPLDGIVAGLQALQPVKGRAVAQLTAS-GLRVIDDSYNANPASMLAAIDILGGFSGR 360

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            ++V+   G      +Q  R +    A  ++ +  V                + + +  F
Sbjct: 361 TVLVLGDMGELGSWAEQAHREVGAYAAGKVSALYAVGP-------------LMANAVQAF 407

Query: 440 IEKG----NRIEAIRTAIEMLNKQDVLVVAG 466
            E G    ++   IR A+        +++ G
Sbjct: 408 GEAGRHFADQASLIR-ALATEQPTTTILIKG 437


>gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 454

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 174/460 (37%), Gaps = 37/460 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I +++   +   +  I+ VS+D+R I  G +FVA+VG + D H F  QA   GA A++V 
Sbjct: 9   IAEITGGALFGNDLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         N P +VV +T+  L   AS ++       +A+TG+ GK++V   V 
Sbjct: 69  KRLDV---------NAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F      T  +F  D  +           L          + + A+  G 
Sbjct: 120 SILQQKGNVLF------TAGNFNNDIGVP-------LTLLRSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    +K       N+   H++   + +    AK  +++ L      AI+  D     
Sbjct: 167 IAYTTQLVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGL-QAGGIAIVNLDSNGDT 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQ 311
                  +      S        +   V      +    + IS + ++ +    + G+  
Sbjct: 226 LWQSVLADKKVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + + +G     +   L  L+ V GR +    +S    I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  +      R +++       ++     R +    A    +  +    +       KI
Sbjct: 346 AVDLLGAFRGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD------AKI 399

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGK 467
            +E+ HGI  F      I+ I+  ++  ++ Q  ++V G 
Sbjct: 400 ISELCHGI-HFETHQEMIDYIKQHLDQTVSDQHTILVKGA 438


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 152/406 (37%), Gaps = 32/406 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + I P  +    +N +S DSR I     F AI G   DGH FI  A+ +GA  +VV++  
Sbjct: 19  IGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                S +I    P+  VD+    L+  A     +    I+A+TG+ GK++    +    
Sbjct: 75  VASIGSLSI----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQ 196
                +   IG              +  + I +   L+ +          +  S  G  +
Sbjct: 131 SSIKKTYACIG--------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                ++      T +   H+      +   +AK  +FE L  K     +  DD++ + +
Sbjct: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELL 235

Query: 257 MKRAHNAGCRVL-SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             ++H  G + + S G  +     L+K      +  + + ++GK  + +    G     N
Sbjct: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEM 371
            L+  G+   +  D    ++ L   H   GR   +    ++G    +D  Y     S++ 
Sbjct: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355

Query: 372 ---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +L  I     GR I V G   +  +  +     +A  L+   I
Sbjct: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401


>gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 145/391 (37%), Gaps = 24/391 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I  G +F+A+ G + DGH ++ +  A+GA A++V    +      
Sbjct: 11  GEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVEREVA------ 64

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +  P L+V +TR  L    +    K    + A+TG+SGK++V   +  I +      
Sbjct: 65  --DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQA--- 119

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   ++ +   +       P+ L   L          + + AS  G   + ++  + 
Sbjct: 120 ---GDAESVLATRGNLNNDLGVPLTL---LQLAPQHRSAVIELGASRIGEIAYTVELTRP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H+      +    AK  + E L   +  A++  DD        RA    
Sbjct: 174 HVAIITNAGTAHVGEFGGPEKIVEAKGEILEGL-AADGTAVLNLDDKAFDTWKARASGRP 232

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+   Q  F                +     +      L G   V NAL AA    
Sbjct: 233 LLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAH 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A+G+    ++  L+ L  V GR     T S G R+  D Y     S+   +  +   +  
Sbjct: 293 ALGVPLDGIVAGLQALQPVKGRAVAQLTAS-GLRVIDDSYNANPASMLAAIDILSGFSGR 351

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLA 410
            ++V+   G      +Q  R +    A  ++
Sbjct: 352 TVLVLGDMGELGSWAEQAHREVGAYAAGKVS 382


>gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 244

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 21/241 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLF 59
           DL  K+   L+  L    +     KI  +  DSR I  G +F+ + G   DG     H F
Sbjct: 7   DLKLKELANLL--LVKETIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLKDRHQF 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           +  A+  GA A++V    +++          P ++V + R  +++ AS  YG       +
Sbjct: 63  VEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + L  
Sbjct: 114 IGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQM 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH+T   Y + K  LF  
Sbjct: 174 MKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFAR 233

Query: 237 L 237
           L
Sbjct: 234 L 234


>gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           dadantii Ech703]
 gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech703]
          Length = 453

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 88/413 (21%), Positives = 144/413 (34%), Gaps = 28/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +      I EVS+D+R + AG +FVA+ G   D H +      
Sbjct: 1   MIRVPLQQLAEVLGARLV-GENLTIGEVSTDTRKLTAGCLFVALRGENFDAHDY------ 53

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
               A  V+           +    P LVV +TR  L   A+ +  +    ++A+TG+SG
Sbjct: 54  ---AADAVAGGAGALVVCKRLPIEVPQLVVADTRLALGALAAWVRSQSHARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G   +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTASILRQCGNVLY------TAGNFNNDIGVPL-------TLLRLAPEHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  + +K       N+   H++   +      AK  +F+ L P+    I
Sbjct: 158 ELGANHIGEIAYTTELVKPETALVNNIAAAHLEGFGSLAGVAQAKGEIFDGL-PENGVGI 216

Query: 246 IYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I AD           A     R  S            V A       T+       D   
Sbjct: 217 INADSNDIARWQPSLAGKTLWRFSSQPASSADFLASDVRAADLGTAFTLHTPVGQVDVTL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   + NAL A  L I++G     V   L +L  VPGR   +        +   Y  
Sbjct: 277 PLPGRHNIANALAATALAISVGASLEAVKLGLSRLQAVPGRLFPILLAPGKRLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
              S+    + +  +   +++VV      G + +   R +     L   D  +
Sbjct: 337 NVGSMTAAAQVLAEMPGYQVMVVGDMAELGQEAEACHRQVGAAAKLAGIDKVL 389


>gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
 gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
          Length = 455

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 141/416 (33%), Gaps = 31/416 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ +       L+N   I      +     VS DSR + AG +FVA+ G + DGH ++  
Sbjct: 2   LKPMSLSQLVPLLNGQQI----GADAAFTGVSIDSRSVSAGQLFVALTGPRFDGHDYLAD 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             A+GA A +V    +          + P L V + R  L    +     + + ++A+TG
Sbjct: 58  VKAKGAVAALVEREVA--------DVDLPQLRVADCRLALGQLGALNRAAYDKPVVAITG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   +  I +  GL     G  +                      L   +    
Sbjct: 110 SSGKTTVKEMLASILRTRGLVHATRGNLNNDLGAPLT-------------LLEIAAEHSA 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS  G  ++ +   +       N G  H+      +    AK  + E L  +  
Sbjct: 157 AVIELGASRIGEIRYTVGLTRPQVVVINNAGTAHVGEFGGPEKIVEAKGEILEGL-GEGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD 301
            AI+  DD        RA        +        H   +           +   G+   
Sbjct: 216 IAILNLDDKAFATWKARAGAHKVISFARSDARADFHASAIGRDARGCPSFQLHGAGEVAQ 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + GE  V NAL AA    A+G+  A +   L  +  V GR         G R+  D
Sbjct: 276 VQLNVLGEHNVSNALAAAAAAHAVGLSLAGIAAGLAAVQPVKGR-TVAQIAPSGVRVIDD 334

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAI 414
            Y     S+   +  +   +   ++V+   G      +     +G  A    D   
Sbjct: 335 SYNANPTSMCAAIDILAGFSGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390


>gi|229495556|ref|ZP_04389289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317539|gb|EEN83439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 460

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 158/410 (38%), Gaps = 29/410 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           KD   L N++ I  +    ++ + V++DSR  +   +F+A+ G + DG+ F   A+A+G 
Sbjct: 13  KDSSLLPNRMDILELYTYFKRCSGVTTDSRAPKRDSLFIALKGERFDGNDFALDALAKGC 72

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV  A          +     L V+++   L+  A     +    I+ +TGT+GK++
Sbjct: 73  AYAVVDRA-------ELAQKEARCLYVEDSFVALTELARMHRRQLGFPIIGITGTNGKTT 125

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + +           T TI +   +       P+ L   LS+        V + 
Sbjct: 126 TKELISAVLRS----------TYTIGATVGNLNNQIGVPLTL---LSFTPEMQYGVVEMG 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS  G         +   G  TN+GR H++   + +    AK  L++ L      A + A
Sbjct: 173 ASHIGDIAELTAIAEPDFGLITNIGRAHLEGFGSFEGVTKAKCELYDWLGQHNGEAWVNA 232

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD     +M+ +            +  F        +          + + +     L G
Sbjct: 233 DDPL---LMQHSAPLVRTTYGTSREAFFRASLLDHPLGYFLAFAFYWQRETYRVHTQLVG 289

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSN 367
           ++ + NAL A  + + +G+    ++  LE       R +++  T      +   Y    +
Sbjct: 290 KYNLPNALAAVAVGLRLGVAPPDIVMALEHYSPSNSRSQYIANTPHHNNLVVDAYNANPS 349

Query: 368 SLEMILKNIRTITS---GRIIV--VFGCGGDRDQGKRPIMGKIALDLADI 412
           S+   ++N  + +      +I+  +F  G    +    ++ ++A +  DI
Sbjct: 350 SMYTAIENFLSTSGAQAKYLILGDMFELGSASREEHLALVQRLARETTDI 399


>gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Photobacterium profundum SS9]
 gi|46914748|emb|CAG21525.1| hypothetical
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Photobacterium profundum SS9]
          Length = 468

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 152/413 (36%), Gaps = 36/413 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +   +  +  VS+D+R + A  +F+A+ G+  D H F   A+ 
Sbjct: 1   MIEVQLAQLADVLDA-ELIGSDITVANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNAMD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVT 121
            G  A++VS    ++          P LVV +T + L L  +     +   H    +A+T
Sbjct: 60  NGVAALLVSRHLPVE---------LPQLVVKDTHQALGLLGAWLKQTMEQDHGLKTMALT 110

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++V   V +I  + G         +T  +F  D  +           L       
Sbjct: 111 GSCGKTTVKEMVAEILSQKGN------VLATAGNFNNDIGVP-------LTLLRLTPEHE 157

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--- 238
              + + A+      +  + +K       NL   H++   +      AK  +FE L    
Sbjct: 158 FAVIELGANHQQEIAYTTNLVKPQVALINNLAAAHLEGFGSLAGVAQAKGEIFEGLTAPL 217

Query: 239 --PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV 295
                S AII  D       +        +  S+      F           +   T+  
Sbjct: 218 NGSGLSTAIINLDSNDVAMWLPFLAQHAVKTFSLTDISADFSATDIFINSEGRACFTMCT 277

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D    L G   V NAL AA L +A+G     V   LE++  V GR + V     G
Sbjct: 278 PEGSTDITLTLAGTHNVSNALAAAALAMAVGATLEQVKAGLEQVVNVKGRVD-VSHPREG 336

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            R+  D Y  +  S++  +  + + T G+   V G   +  +    +  ++A 
Sbjct: 337 LRLIDDTYNASVASVKAAIDLLASFT-GQRWFVLGDMAELGEDSASLHREVAE 388


>gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           petrophila RKU-1]
 gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga petrophila RKU-1]
          Length = 426

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 153/443 (34%), Gaps = 49/443 (11%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            +S+ ++ G +FVA+ G + DGH FI +A+  GA A++        D          I +
Sbjct: 11  LNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSDR---------IFL 61

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V+++   L+  A    G     ++ +TG+SGK++    +  + +         G  +T  
Sbjct: 62  VESSVDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLKNKRSVFKTPGNMNT-- 119

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                              L+    + +  + + AS  G   H             N+G 
Sbjct: 120 -----------EYGLPLSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGN 168

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+++  T++     KM + +      +   ++ D    +EV         + L  G +G
Sbjct: 169 AHLEFFGTRERIMETKMEIIKHSKENATAVTLFDDPDLRREV-----PCYRKTLFFGKEG 223

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVL 333
               LK                   F           Q+ N   +  +  A+G    +  
Sbjct: 224 GDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSGYWNGGQLLNIAASLCVMRALGETVDIFD 283

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
             L  L  VPGRF       +   I  D Y  +  + +  ++ +      R  VV     
Sbjct: 284 --LASLKTVPGRFN--VREKKDVLIVDDTYNASPEAFQTSIEALLRFPGRRFAVVGAMKE 339

Query: 393 --DRDQGKRPIMGKIALDLADIAIVTDD-----------NPRSEDPEKIRAEIIHGIPG- 438
             +R +     +G+    L  + I   +             +S+DPEKI  ++   +   
Sbjct: 340 LGERSKEFHEELGERLNVLDGVYIFLSEPEAEWIKSKKIILKSDDPEKIAKDLASRVTEG 399

Query: 439 --FIEKGNRIEAIRTAIEMLNKQ 459
              + K +R   I   +EM  K+
Sbjct: 400 DVVLFKASRAVRIEKVLEMFEKE 422


>gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 466

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 142/389 (36%), Gaps = 27/389 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +Q G +FVA+ G   D H F+PQA AQGA A +               +  P 
Sbjct: 27  VHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQGAVAAIAQHGLR--------EAGLPG 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A+    +    ++AVTG++GK++V   +  I +            +T
Sbjct: 79  LEVADTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVTQMIAAILRA----WKPDAALAT 134

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +   D  +           L   +S  V  + +  +  G   +     +       N 
Sbjct: 135 EGNLNNDIGVP-------LTLLRLRASHQVGVIELGMNHPGEIAYLAHLARPSVALVNNA 187

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H+++  T +A       +   L   +  A+  ADD Y+    + A     +VL+   
Sbjct: 188 QREHLEFMATVEAVAQENGSVLASL-DADGIAVFPADDVYTAVWRRLAGER--QVLTFAL 244

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                         +  QV         +F   + G   V NAL A    +A G+  + +
Sbjct: 245 AAPADVTASARWEGDGWQVEAQTPSGPIEFSLHIAGRHNVKNALAATASALAAGVPLSFI 304

Query: 333 LEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              L     V GR   +    +G     I   Y    +S++  ++ +  +   R++V+  
Sbjct: 305 AAGLSAFVPVKGRSRALSVPLQGRSLTLIDDTYNANPDSMQAAIQVLAELPGPRLLVMGD 364

Query: 390 CGGDRDQGK--RPIMGKIALDLADIAIVT 416
                 QG       G+ A       + T
Sbjct: 365 MAEVGSQGPQFHDEAGRNAAAQGIEKLFT 393


>gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
 gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
          Length = 476

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 156/444 (35%), Gaps = 41/444 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF+A+ G   +G+ F   A+ +G    +V  A   +        N   
Sbjct: 51  VTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAE------AGNNRF 104

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN        A          ++ +TGT+GK++    +  +         +     T
Sbjct: 105 ILVDNALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELISAVLAE------KYKVHHT 158

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + +F  D  +           L   S   +  + + AS     +  +  ++   G  TN+
Sbjct: 159 LGNFNNDIGVP-------RTLLEMTSDDEIAVIEMGASHPKDIEKLVTYVEPTCGLITNV 211

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +   N K  L++ L    +   +   +    E+ ++      RV++ G 
Sbjct: 212 GRAHLQGFGSFEGVKNTKGELYDYLKAHNALLFLNESNPDLVEMAEQ--REFERVITYGQ 269

Query: 273 QGKFIHLKKVCAIHNKQQVTISVE---GKD------FDFLFPLPGEFQVYNALVAAGLCI 323
                   +V +     + +       G +      ++    L G + + N L A  + +
Sbjct: 270 DNTADVKGEVVSCAPLLKFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNMLAAITIGL 329

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G++   +   LE       R +   T      I   Y    +S++  ++N R +    
Sbjct: 330 HFGVEPQKICHALESYVPSNNRSQLTETKDNK-LIVDAYNANPSSMKAAIENFRLMDIKN 388

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            + +         G    +G +  +     +        E+   +  E       F +  
Sbjct: 389 KMAIL--------GDMRELGDVTAEEHQRVVDELIASGLENVWLVGEEFGKTNCSFRKFA 440

Query: 444 NRIEAIRTAIEMLNKQD-VLVVAG 466
           + IE ++ AI      D  +++ G
Sbjct: 441 D-IEEVKAAIAAQKPIDHYILIKG 463


>gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
 gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
          Length = 475

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 98/464 (21%), Positives = 173/464 (37%), Gaps = 37/464 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  L         R+   VS D+R ++AG +F AI G   DGH F+  A  +GA A V+
Sbjct: 12  LVGALHARVSGALAREATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAFEKGAAAAVI 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             A++ +   A      P+L+V + ++ L +   R   +    I A+TG+ GK+S     
Sbjct: 72  DEAHAAEFSGAG-----PLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTSTKDMT 126

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH- 192
           + +  R G +   +               +  +   +   L+ + +     V     +H 
Sbjct: 127 RLMLSRFGETHASV--------------ASYNNQWGVPLTLARMPAASRFGVFELGMNHA 172

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G     +  ++      T +   H+++  + +   +AK  +F  L      AII  DDA 
Sbjct: 173 GEITGLVAQVRPHVAVVTRVAAVHLEHFASVEGIADAKAEIFSAL--DGGVAIINRDDAT 230

Query: 253 SKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            + +   A      + S G  +G    L     I +  +V   + GK   +    PG+  
Sbjct: 231 YERLAAAAAPTAGHIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHI 290

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTSNS 368
             N+L A  +     ID       L       GR   E +   S    +  + Y     S
Sbjct: 291 ALNSLAALLIAAVFDIDVEKAALTLADFTPPSGRGAREKLMAPSGPFTLIDESYNANPTS 350

Query: 369 LEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +    +          GR I V G   +       + G++A+DLA       D   +  P
Sbjct: 351 MRSAFELLGATTPGAGGRRIAVLGDMLELGPCGAELHGELAVDLARAKC---DLLFTAGP 407

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNKQDVLVVAG 466
             + A + +  P  +   +R  A+      +  L   DV++V G
Sbjct: 408 --LMASLYYAAPNAMRAAHRRTALELEEAVLAALRAGDVVMVKG 449


>gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
 gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
          Length = 477

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 99/470 (21%), Positives = 172/470 (36%), Gaps = 37/470 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA  +
Sbjct: 8   SDLLAAMNGRPVGNLPEGIIGISIDSRTIAKGEAFFAIRGDRVDGHDYAGIALANGASLL 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS         A  R   P++VVD+  + +         +    ++AVTG+ GK++   
Sbjct: 68  VVSEG----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKTTTKE 123

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++ +    G     I                   P+ LA+ +   +  G+    +  + 
Sbjct: 124 MLRHVLSPLGRVHASI----------ASFNNHWGVPLTLAR-MPETTEFGIFE--IGMNH 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HG  +     ++      T++   H+    +      AK  +FE ++ K   A+I  D  
Sbjct: 171 HGEIRPLTAMVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVV-KGGHAVINRDSP 229

Query: 252 YSKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
             + + + A  AG   + S G   K    L +         +   + G+  +     PG 
Sbjct: 230 QFELLERAAVAAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIGGRTREVTIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTS 366
               NAL         G D   VL  L  +    GR          G    +D  Y    
Sbjct: 290 HIAENALAVVAAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYNANP 349

Query: 367 NSLEMI---LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            S+      L+       GR I + G   +  +    +   +A  + +  I TD      
Sbjct: 350 ASMRAAISLLRAAEPPAGGRRIAILGDMLEMGEHAAAVHAALAEPIVEAGI-TDVWLAGP 408

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAI----RTAIEMLNKQDVLVV-AGKG 468
           D     A +   +PG +   +R EA+      A+  +   DV++V + KG
Sbjct: 409 D----IAHLRDALPGEVSVVHR-EAVGDLTSYALGAVAAGDVVMVKSSKG 453


>gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
 gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 458

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 144/391 (36%), Gaps = 24/391 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I  G +F+A+ G + DGH ++ +  A+GA A +V    +      
Sbjct: 20  GEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVEREVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +  P L+V +TR  L    +    K    + A+TG+SGK++V   +  I +      
Sbjct: 74  --DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQA--- 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   ++ +   +       P+ L   L          + + AS  G   + ++  + 
Sbjct: 129 ---GDAESVLATRGNLNNDLGVPLTL---LQLAPQHRSAVIELGASRIGEIAYTVELTRP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H+      +    AK  + E L   +  A++  DD        RA    
Sbjct: 183 HVAIITNAGTAHVGEFGGPEKIVEAKGEILEGL-AADGTAVLNLDDKAFDTWKARASGRP 241

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+   Q  F                +     +      L G   V NAL AA    
Sbjct: 242 LLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAH 301

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A+G+    ++  L+ L  V GR     T S G R+  D Y     S+   +  +   +  
Sbjct: 302 ALGVPLDGIVAGLQALQPVKGRAVAQLTAS-GLRVIDDSYNANPASMLAAIDILSGFSGR 360

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLA 410
            ++V+   G      +Q  R +    A  ++
Sbjct: 361 TVLVLGDMGELGSWAEQAHREVGAYAAGKVS 391


>gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
 gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/486 (19%), Positives = 171/486 (35%), Gaps = 64/486 (13%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                +    +I  VS+D+R IQ G +FV +VG   DGH ++ QA+ QGA A +  +   
Sbjct: 3   GARAYKGEPVRIAGVSTDTRSIQPGQLFVPLVGENFDGHSYVAQALQQGAAAALWETKRE 62

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137
           L    A    + P+L V +T K L   A+    +    ++ +TG++GK++    V  +  
Sbjct: 63  LPQELA----DAPLLFVRDTLKALQQLATSYREELYVRVIGITGSNGKTTTKDMVAAVLG 118

Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                 + +G  +  IG   T+                    L          + +  S 
Sbjct: 119 TAYKVHKTAGNLNNHIGLPLTV--------------------LQLDEETDAAVLEMGMSG 158

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +   +  +      TN+G  H+    +++    AK+ +    L      +   D+ 
Sbjct: 159 FGEIELLTNIARPDVAVITNIGDAHLLQLGSREGIAKAKLEI-AHGLHSGGILLYNGDEP 217

Query: 252 -YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPL 306
             + E+   +   G ++ + G  +        +          +  +G+D     +  P+
Sbjct: 218 LLAAELAGMSLPEGTQLQTFGLGESNDWSAADIEVGAVSSAFAVKRKGQDTVSAPYTIPV 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
           PG+  V NAL A  +    GI    +   L  L +   R + V     G  I  D Y   
Sbjct: 278 PGQHNVSNALAAIAIGRRFGISEENIRNGLIGLELTGMRIQPVKA-HNGAMILNDAYNAN 336

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNP 420
             ++   +  +  ++   R  +V G   +    +  +  +       D AD  I     P
Sbjct: 337 PTAVRAAIDLVGQLSGFRRKWIVLGDMRELGPEEESLHFETGAYITPDKADAVITFG--P 394

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAI----------RTAIEMLNKQDVLVVAG-KGH 469
            SE           G         +  AI              E +  QD+++V G +G 
Sbjct: 395 LSEHTS-------AGALSQFPAEAKGTAIVHFDDKGKLGEWLREQVEPQDLVLVKGSRGV 447

Query: 470 ETVHIV 475
               IV
Sbjct: 448 RMEQIV 453


>gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 458

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 157/450 (34%), Gaps = 40/450 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  V+ DSR    G +FVA+ G   DGH F P A+  GA A++ +             
Sbjct: 24  TQVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSAVEAGAVAVLAARPL---------- 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              P +VV++    L  +A        + +++AVTG+SGK+S    + Q+  R+G + F 
Sbjct: 74  -GLPAVVVEDPLAALGAWARAHVEALADLDVIAVTGSSGKTSTKDLIAQVLDRAGATVFT 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +            T    +L              V + A   G   +         
Sbjct: 133 QGSFNNEIGLPLTALEATADTRHL-------------VVEMGARGQGHIAYLTGITPPRI 179

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAG 264
           G+  N+G  H            AK  L E L    +   A++ ADD     V   +    
Sbjct: 180 GAVLNVGTAHAGEFGGPDMTARAKGELVEALPAAAEGGVAVLNADDP---RVAAMSARTK 236

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             V++ G +    ++   V      +   T+            + GE QV NAL AA + 
Sbjct: 237 AEVVTFGVERAADVYATGVALDGRGRASFTLHTPAGQAPVRLQVVGEHQVPNALAAAAVA 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-- 379
            A G+D   +   L     V      V     G  +  D Y   ++S    L+ +  +  
Sbjct: 297 GAAGMDVEQIGGALTAAVPVSEGRMRVTERPDGVTVVDDAYNANTDSTSAALRALAHLGR 356

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            + GR I + G   +   G      ++    A + +         +   +  E     PG
Sbjct: 357 ESGGRTIALLGEMRELGDGSEREHRRVGALAASLGVDVLVAVGRAEAHALADE---YGPG 413

Query: 439 FIEKGNRIEAIRTAIEM-LNKQDVLVVAGK 467
                +R  A        L   DV++V G 
Sbjct: 414 GQVVADRDAAGEWLERYGLRAGDVVLVKGA 443


>gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 528

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 172/494 (34%), Gaps = 52/494 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + +L      E++        Q  +  +   V  DSR + AG +F+A+ G + DGH +  
Sbjct: 25  MIELTLGQIVEIVGGELAGGAQ-PDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYAT 83

Query: 62  QAIAQGAEAIVVSSAYSLQ---DFSATIRSNTPILVVDNTR-------KFLSLFASRL-- 109
            AI QGA A++ +    +        T   +   +   +         + LS  A  +  
Sbjct: 84  TAIGQGAVAVLAARPVDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVD 143

Query: 110 --YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
              G H   ++A+TG++GK+S   F+  +   +G +    G  +            T   
Sbjct: 144 LAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCTTHT 203

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
            YL    + +S++G+ H            H         G+  N+G  H+    ++    
Sbjct: 204 RYLV---AEMSARGIGH----------IAHLARITPPRIGAVLNVGSAHLGEFGSRANIA 250

Query: 228 NAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHL 279
            AK  L E L        A++ ADD +   V   A     RV++           ++   
Sbjct: 251 QAKGELVEALPAAADGGVAVLNADDPF---VAAMAPRTTARVVTFSTANPPAPGAQYWAG 307

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   +   T+      +     + GE QV NAL AA + I  G+D   V+  L   
Sbjct: 308 DLELDDVARASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSH 367

Query: 340 HVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGC---- 390
                    V T   G  +  D Y    +S+   +  +    S R       V G     
Sbjct: 368 AAASAHRMDVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGEL 427

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G +  Q  R +  ++A    +  I   DNP   +   +R +            +   A+ 
Sbjct: 428 GDEAVQEHRALGAELAKYHVERLIAVGDNP---NCRALREQAAALGVRTDAVPDAASAVD 484

Query: 451 TAIEMLNKQDVLVV 464
                +   DV++V
Sbjct: 485 LLRHQVRDGDVVLV 498


>gi|218671408|ref|ZP_03521078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli GR56]
          Length = 222

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 102/217 (47%), Positives = 134/217 (61%), Gaps = 1/217 (0%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            H ++V    +KQ   I +  + F+   PL G+ QV NALVAAGL ++ G++  + +  L
Sbjct: 2   PHAERVEHFRHKQMAEIHIGDEIFEVDIPLAGDLQVANALVAAGLAMSTGVEPNVAMAAL 61

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           EKL    GR E VG    G   YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+
Sbjct: 62  EKLVGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDR 121

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           GKRPIMG+IA  LAD+ IVTDDNPRSE+P  IRAEI+   P   E  +R  AIR A+ ML
Sbjct: 122 GKRPIMGEIACRLADVVIVTDDNPRSEEPAAIRAEIMAAAPCASEIADRATAIREAVAML 181

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              D L+VAGKGHE    +         D   +R+ L
Sbjct: 182 TSGDTLIVAGKGHEEGQTIGAVTLP-FSDHAEVRKAL 217


>gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 455

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 153/428 (35%), Gaps = 48/428 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  +N++  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA AI                   P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFENGAVAIFSEKDL----------PGKPHLLVNDCLKAFQTLAQYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPED 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIHLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MD 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I   D      ++         V+  G       L        K  +T +     
Sbjct: 211 SNGILIAPGDS-----IIDSYLPENQMVIRFG---DHQELNVTDIREEKDSLTFTTNVLA 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PLPG++   NA+VAA +   + +    ++E LE + +   R E+    + G  I 
Sbjct: 263 TPVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM----GKIALDLAD 411
            D Y     ++ +IL+    I     G+ I V     +       +      +++ D  D
Sbjct: 322 SDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRID 381

Query: 412 IAIVTDDN 419
             +   D+
Sbjct: 382 QLVFYGDD 389


>gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 458

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 140/368 (38%), Gaps = 33/368 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R I+ G +F+A+ G K DGH F+ +A  +GA A VVS              N 
Sbjct: 27  SNISTDTRSIKKGDLFIALKGKKFDGHDFLHEAFLKGAVAAVVSEDK---------YRNF 77

Query: 91  PILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++V +T K L   AS           ++ +TG+ GK++    +  +    G+S    G
Sbjct: 78  PLIIVQDTLKALHNMASYYIRNILVNAKVITITGSVGKTTTKDMLNTVLLHYGVSHVNEG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +                 YL                +  S  G  +            
Sbjct: 138 NLNNNIGLPFTILKAPEDCQYLILE-------------IGMSRAGEIKELSKISNPDIAV 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   H++   +      AK+ +    +      ++  D+ +   ++    NA   V+
Sbjct: 185 ITNIEPAHVENFSSLLDIAQAKLEILHG-MKNNGTLVLNKDNEHYDYLLS---NANRNVV 240

Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           S G  +   + L ++    N   + I +  G+  +   P+ GE   Y+ALV   +  ++ 
Sbjct: 241 SFGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNCNLPVKGEHFAYSALVVTAVLQSLE 300

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTITSGR 383
           +D + +   LE   V  GR         G  +      Y     S++  ++ + T ++ R
Sbjct: 301 LDLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIRTLGTYSNLR 360

Query: 384 IIVVFGCG 391
            + + G  
Sbjct: 361 KVALLGDM 368


>gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 461

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/472 (17%), Positives = 172/472 (36%), Gaps = 40/472 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  ++  E +    +      ++KI  VS DSR I  G  FV + G   DGH FI  A  
Sbjct: 1   MTLREISEAVGG-KLPAAGDLDKKIGRVSIDSRDIGPGDFFVPLAGEHTDGHRFIAAA-- 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
                   +  ++    + T      ++ V++  + L   ++    K    ++AVTG+ G
Sbjct: 58  ---AEKGAAGCFAAFSKNVTHPEGMTVISVEDPEQALQDLSAFYRRKFQLPVVAVTGSVG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +            ++    T  +           P+ L +  S   +     +
Sbjct: 115 KTTTKDMIAAALS------PELKTLKTEGN----LNNHLGVPLMLTRLDS---TYEAAVL 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  S +G                TN+G  H++   +++    AK  L   L   +  A+
Sbjct: 162 EMGMSGYGEIDLLAKLALPTVAVITNIGESHLEMLGSREGIARAKCELLGHL-AADGVAV 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFL 303
           + AD+     ++      GCRV++ G+ +   +    +      ++  I  EG    + +
Sbjct: 221 VNADEPL---LVPHIKGLGCRVITFGFDEHATVRCTDIINDEAGKRAIIEQEGFAPLEVV 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG   +YN + A  +   +G+D +++ E   ++ +   R E V T +    I   Y 
Sbjct: 278 PPLPGRHNIYNLMAALAVGRLLGVDDSVLTEGFSRVRLSGMRLETVTTPAGIQVINDAYN 337

Query: 364 HTSNSLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVTD 417
            +  ++      +  +        V G     GD ++      G+       + + ++  
Sbjct: 338 ASPTAVSAAFDVLAELAKDAARFAVLGDMLELGDWEEEGHRQTGRQVARHNLSGLLVL-- 395

Query: 418 DNPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                E  + I    +  G P        +  +A +   ++    D +++ G
Sbjct: 396 ----GERAQLIADGAVAAGYPPQRVYRCESHAQAAQVIAKIARAGDWVLLKG 443


>gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 458

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/447 (21%), Positives = 167/447 (37%), Gaps = 40/447 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA+ G   DGH F+ +A  QGA   +VS A +           
Sbjct: 24  VSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKAFGQGAAGAIVSEAIAQ---------- 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V ++   L   A     +    ++ VTG+ GK+     +     R          
Sbjct: 74  -PHVLVPDSAAALEALARASRARMQGKVVGVTGSVGKTGTKEALFHALDR---------- 122

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV-THVSVEASSHGLDQHRLDGIKLIAGS 208
                     +  +  + + +  +LS +  +       +  +  G        ++     
Sbjct: 123 --ICPGEVHRSVKSYNNHVGVPLSLSRMPRESAYGVFEMGMNHAGELAALTRQVRPHVAI 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +   HI++  T++    AK  +FE L P    A+I  D  +   +  +A     R+L
Sbjct: 181 VTAIAPAHIEFFGTEEKIAEAKAEIFEGLEP-GGTAVIPYDSPHVATLYAKAEKHAARIL 239

Query: 269 SVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           + G+         + V A      VT ++ G +  F    PGE  V NAL       A+G
Sbjct: 240 TFGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVSNALAVLAAVEAVG 299

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVD--YAHTSNSLEMILKNIRTITSGR 383
            D A     L ++  +PGR E       GG  + +D  Y     S+   LK +    +GR
Sbjct: 300 GDLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSMAATLKQLGREQAGR 359

Query: 384 IIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            I V G   +     R +   +         D AI+  D        +  AE + G+  F
Sbjct: 360 RIAVLGGMRELGDRSRDLHAGLVEPLKGSHVDYAILVGD------EMQPLAEALGGVIAF 413

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               +  +A       +   D ++V G
Sbjct: 414 DHVPDAAKATDLIQGEMRAGDAILVKG 440


>gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 450

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 99/474 (20%), Positives = 174/474 (36%), Gaps = 49/474 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K+  E+    ++ P     + I  V++DSR + +G  FVA+ G + +G  F+P AIAQG
Sbjct: 6   LKEIAEITGG-ALLPGSDGSQTIQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQG 64

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++V            I  + P ++V +T   L    +    +    +LAVTG+ GK+
Sbjct: 65  AGGVLVD-----------IPVSAPGVLVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   +  I  +SG      G                 + + +   L+ L  +    V  
Sbjct: 114 TVKEVLTAILNQSGPVLATRG--------------NQNNHVGVPLTLARLGPEHRYAVLE 159

Query: 188 EASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              +H  +   L G+ +       N    H++   +  A   AK  +   L       I+
Sbjct: 160 MGMNHPGELTLLSGLARPTLALINNAAPAHLEGLGSVAAIAAAKGEILSGL-DNRGLTIL 218

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD ++    +RA     R  S+ ++   +             + +      F    PL
Sbjct: 219 NGDDPFADFWAERAPGEVWR-FSLEHRPTRVRGHWRAHEQGGGHLEVRAPQGQFTLEIPL 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
           PG+    N L A    +A+ I    +   +  L  +PGR ++  +   G R+  D Y   
Sbjct: 278 PGQHNGRNVLAATTAALALDIPIPQIQRAVAGLQTIPGRLQW-RSGPHGSRMLDDTYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIA--------------LDL 409
             SLE  L+ +      RI+V+   G             G +A               + 
Sbjct: 337 PASLEAALRVLAAQPGQRILVLGDMGELGPEAALYHHQAGLLARQLGVERLYTLGSLAEE 396

Query: 410 ADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           A  A  T+    SE P  + A    +      + KG+R   +   ++ L + D 
Sbjct: 397 AANAFGTNAEAFSELPPLLAALHRRLDEETVVLIKGSRAARMERVVQALGEGDA 450


>gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
          Length = 454

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 175/460 (38%), Gaps = 37/460 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I +++   +   +  I+ VS+D+R I  G +FVA+VG + D H F  QA   GA A++V 
Sbjct: 9   IAEITGGALFGNDLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         N P +VV +T+  L   AS ++       +A+TG+ GK++V   V 
Sbjct: 69  KRLDV---------NAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F      T  +F  D  +           L          + + A+  G 
Sbjct: 120 SILQQKGNVLF------TAGNFNNDIGVP-------LTLLRSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    +K +     N+   H++   + +    AK  +++ L      AI+  D     
Sbjct: 167 IAYTTQLVKPVIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGL-QAGGIAIVNLDSNGDA 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQ 311
                  +      S        +   V      +    + IS + ++ +    + G+  
Sbjct: 226 LWQSVLADKKVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + + +G     +   L  L+ V GR +    +S    I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  +      R +++       ++     R +    A    +  +    +       KI
Sbjct: 346 AVDLLGAFHGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD------AKI 399

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGK 467
            +E+ HGI  F      I+ I+  ++  ++ Q  ++V G 
Sbjct: 400 ISELCHGI-HFETHQEMIDYIKQHLDQTVSDQHTILVKGA 438


>gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 455

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 154/431 (35%), Gaps = 54/431 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  +N++  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFENGAVATFSEKEL----------PGKPHLLVNDCLKAFQTLAQYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPED 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIHLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MD 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                I   D   D Y  E           V+  G    +  L        K  +T +  
Sbjct: 211 SNGILIAPGDSIIDPYLPE--------NQMVIRFG---DYQELNVTDIREEKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++E LE + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM----GKIALD 408
            I  D Y     ++ +IL+    I     G+ I V     +       +      +++ D
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPD 378

Query: 409 LADIAIVTDDN 419
             D  +   D+
Sbjct: 379 RIDQLVFYGDD 389


>gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 455

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 154/431 (35%), Gaps = 54/431 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  +N++  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNI-SDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFENGAVATFSEKEL----------PGKPHLLVNDCLKAFQTLAQYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPED 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIHLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MD 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                I   D   D Y  E           V+  G    +  L        K  +T +  
Sbjct: 211 SNGILIAPGDSIIDPYLPE--------NQMVIRFG---DYQELNVTDIREEKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++E LE + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM----GKIALD 408
            I  D Y     ++ +IL+    I     G+ I V     +       +      +++ D
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPD 378

Query: 409 LADIAIVTDDN 419
             D  +   D+
Sbjct: 379 RIDQLVFYGDD 389


>gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
 gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
          Length = 453

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGL-QAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 475

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/454 (20%), Positives = 157/454 (34%), Gaps = 47/454 (10%)

Query: 30  INEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ +S+ DSR +  G IF A  G   DGHLF+PQA+  GA  +VV     +         
Sbjct: 30  VDGLSTTDSREVVPGSIFFAKPGETTDGHLFVPQALDSGAALVVVDRELDVAG------- 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSS 144
             P LVV++T   L   A+ +  +        I+ +TG++GK++  + ++ I ++SG + 
Sbjct: 83  --PQLVVEDTVVALGELAADVIARVRALGNLRIVGITGSNGKTTTKNLLRAILEQSGPTI 140

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                                        L            + AS  G     +   + 
Sbjct: 141 A-------------PRASFNNEVGAPVTMLEVSERTQYLVAEMSASGIGEIARLVGMARP 187

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G    +G  H       +    AK  +  +LL +   A++  DD     V   A    
Sbjct: 188 DIGIVLKVGLAHAGEFGGIEKTLAAKTEMVSDLL-ESDVAVLNLDDP---RVASMADKTA 243

Query: 265 CRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQVYNALV 317
             VL  G   +  +    + +        + + G D          F + GE  V NAL 
Sbjct: 244 AHVLWFGLDDRAAVRASDIRSTSRGTSFVLRLPGADGGDAASRPVRFHVLGEHHVMNALA 303

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA     +GI    ++  LE +         V   + G  +  D Y  + +S+   LK +
Sbjct: 304 AAAAAHTLGIGIDRIVGGLEAVQRAERWRMEVLGGAGGVTVINDAYNASPDSMSAALKTL 363

Query: 377 RTITSGRIIVVFGCGGDRDQG-----KRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRA 430
             I       +   G   + G     +   +G +A+    D  +V     R      I  
Sbjct: 364 AQIAGPGERTIAVLGEMSELGEFSGEEHDRVGLLAVRLGIDQLVVVGPPARRMHITAINE 423

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               G   + E  +   A     E L   D ++V
Sbjct: 424 GSWDGESLYFESQD--AAYDHLKETLRAGDTVLV 455


>gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 467

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 163/427 (38%), Gaps = 45/427 (10%)

Query: 1   MKLQDL--IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L DL  I K   E+ + +   I   ++   KI  VS+DSR I  G +++ +VG   DG
Sbjct: 2   MALGDLKMIEKTLSEIAHMINGEISDEKFSAIKIKGVSTDSRTIDPGELYIPLVGEVFDG 61

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            +FI +   +GAEA ++     +         + P + V +T+K L   A+    +    
Sbjct: 62  RIFIKECEDKGAEAFIIDDPTKINK-----TVSIPYVRVADTKKALQDLATAYRKELSCK 116

Query: 117 ILAVTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           ++ +TG++GK++    + +I        +  G  + +IG   T+                
Sbjct: 117 VIGITGSNGKTTTKDLLYKILSEKYKTQKTCGNLNNEIGVPKTV---------------- 160

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               LS      V  + +   + G        +K      TN+G  H+   +T+     A
Sbjct: 161 ----LSLDPDTEVAIIELGTDNFGDISLTSRMVKPHIAMITNIGDAHLHNLKTRSGILKA 216

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K+ + E  +  +   I   DD   KE +   ++   +VLS G   K    K V       
Sbjct: 217 KLEILEG-MEDDGIFIYNIDDPTMKEEIP-TYDIKQKVLSFGRSDKA-DFKIVFEKSPTS 273

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +  S E   F+   PL GE  +YNA     +   +G++  ++     ++     R E +
Sbjct: 274 IIRFSHENDHFEV--PLMGEHNIYNAAAVVMISEMLGLNKEMIDAGFMEVKSSQNRTELL 331

Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL 407
                G  I  D Y     SL   L+    +    R IV      +  + +  +  ++  
Sbjct: 332 --ECDGFDILDDSYKSNPQSLLAGLETTYMLEGYKRKIVCLADMLELGENEVDLHREVGK 389

Query: 408 DLADIAI 414
            L    I
Sbjct: 390 KLDSKKI 396


>gi|325860151|ref|ZP_08173276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
 gi|325482238|gb|EGC85246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
          Length = 437

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 142/440 (32%), Gaps = 37/440 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR    G IF+A+ G   DG+ F   A+ +G    VV      +        +   
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAK------ADDGRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     + P  ++ +TGT+GK++    +  +                
Sbjct: 70  ILVDDALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEK------------ 117

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +                  L       +  + + AS  G  +  +  ++   G  TN+
Sbjct: 118 -FNVHHTEANYNNDVGVPRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +    E+   A     R+++ G 
Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLKAHDGLLFLNESNVDLMEMA--AQREFSRIITYGQ 234

Query: 273 QGKFIHLKKVCAI-----HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                    V +         Q ++        +    L G + + N L A  + +  G+
Sbjct: 235 DETADVQGNVVSCAPFLKFIWQALSHQPSSGTCEVQTHLIGSYNLDNMLAAIAIGLHFGV 294

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               V   LE       R +   T +    I   Y    +S+   ++N R +     + +
Sbjct: 295 TPQQVCHALENYIPHNNRSQLTET-AHNRLIVDAYNANPSSMAAAIENFRLMQVKDKMAI 353

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
                    G    +G  + +     I    N   ++   +  E       F +  +  E
Sbjct: 354 L--------GDMRELGTASGEEHQKVIDLLKNTGIDNVWLVGEEFGKTRTSFRKFHDVEE 405

Query: 448 AIRTAIEMLNK-QDVLVVAG 466
            ++  I         +++ G
Sbjct: 406 -VKAEIARCRPENHYILIKG 424


>gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 486

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 156/423 (36%), Gaps = 48/423 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 32  MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 84

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 85  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 134

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G                 + I L   + ++ 
Sbjct: 135 AVTGSNGKTTTKDMIAAILSTTYKTYKTQG--------------NYNNEIGLPYTVLHMP 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  I K      T +G  H+++  +++     KM++ +  
Sbjct: 181 EDTEKIVLEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLEFFGSREKIAEGKMQITDG- 239

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  +   I   D      ++     A    +  G+      L+       K  +T     
Sbjct: 240 MSSDGILIAPGDP-----IIDPYLPANQMTIRFGH---DQELQVTELKEEKHSLTFKTNA 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  
Sbjct: 292 LEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGAD 350

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++ +IL+    I     G+ I +     +  +    +  ++ + +   +
Sbjct: 351 ILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDS 410

Query: 414 IVT 416
           I T
Sbjct: 411 IDT 413


>gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 458

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 144/391 (36%), Gaps = 24/391 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I  G +F+A+ G + DGH ++ +  A+GA A +V    +      
Sbjct: 20  GEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEVAAKGAVAALVEREVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +  P L+V +TR  L    +    K    + A+TG+SGK++V   +  I +      
Sbjct: 74  --DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQA--- 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   ++ +   +       P+ L   L          + + AS  G   + ++  + 
Sbjct: 129 ---GDAESVLATRGNLNNDLGVPLTL---LQLAPQHRSAVIELGASRIGEIAYTVELTRP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H+      +    AK  + E L   +  A++  DD        RA    
Sbjct: 183 HVAIITNAGTAHVGEFGGPEKIVEAKGEILEGL-AADGTAVLNLDDKAFDTWKARASGRP 241

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+   Q  F                +     +      L G   V NAL AA    
Sbjct: 242 LLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAH 301

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A+G+    ++  L+ L  V GR     T S G R+  D Y     S+   +  +   +  
Sbjct: 302 ALGVPLDGIVAGLQALQPVKGRAVAQLTAS-GLRVIDDSYNANPASMLAAIDILSGFSGR 360

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLA 410
            ++V+   G      +Q  R +    A  ++
Sbjct: 361 TVLVLGDMGELGSWAEQAHREVGAYAAGKVS 391


>gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 470

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 152/384 (39%), Gaps = 20/384 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ V +D+R I+ G +FVA+ G + D +  + +A A+GA A++  +  +   + A     
Sbjct: 27  IHRVHTDTRTIEPGDLFVALQGERFDANDMLHEAFAKGAAAVLCHAGLTASAYPA----G 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V+N++  L+  A+    +    ++AVTG++GK++V   +  I          +  
Sbjct: 83  LPRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKTTVTQMIASILHAHAPDGAAL-- 140

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +T+ +F  D  +        A+    +   G+ H    A    + Q             
Sbjct: 141 -ATVGNFNNDIGVPLTLLRMRAQHRIAVVELGMNHPGEIAVLAAMAQ-------PTVALV 192

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H+++  T +A       +   L P+   A+  ADD Y+    + +        +
Sbjct: 193 NNAQREHLEFMHTIEAVARENGSVLSSL-PETGTAVFPADDDYAPLWRELSAGRVVATFA 251

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G  G    ++         QV       +  +   + G   V N+L AA   +A G+ +
Sbjct: 252 RGDAGADFVVRSASWQDGAWQVVAGTPQGELRYRLAIAGRHNVKNSLAAAACALAAGVPA 311

Query: 330 ALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
             V   LE    V GR     V   +    +  D Y    +S+   +  +  +   R++V
Sbjct: 312 ITVARGLEAFVPVKGRCRAMQVRQGALDFTLVDDTYNANPDSMRAAIDVLADLPGPRLLV 371

Query: 387 VFGCGGDRDQGK--RPIMGKIALD 408
           +   G   +QG       G+ A D
Sbjct: 372 MGDMGEVGEQGPAFHAEAGRYARD 395


>gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 462

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/471 (15%), Positives = 170/471 (36%), Gaps = 35/471 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ L   +  + +  +           I  V+ +S+ I+ G +F+ +   + DGH FI  
Sbjct: 1   MKALAINEIVKAVGAVDYDSTAAHNL-ITSVAFNSKEIKPGGLFIPLKAAR-DGHDFIQD 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI  GA+A + ++        A   S  P++ V++T       A    G     ++AVTG
Sbjct: 59  AIDHGAQATLWAND------PADAPSEIPVIQVEDTFTAFVDLAKYYLGLIGPKVIAVTG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++           +       G  +                  L            
Sbjct: 113 SAGKTTTKDMTAATLSTTFNVYKTQGNYNNQLGVPFTILSMPEDTEVL------------ 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +  S  G  +       +     T +G  HI++  +++    AK+ + E L  ++ 
Sbjct: 161 -VVEMGMSGPGEIRFLAQLCPMDVAVITMIGESHIEFLGSRENIAKAKLEILEGL-KEDG 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFD 301
             I   D+    + +        + + VG    + ++ + +           ++   + +
Sbjct: 219 TFIYPGDEPLVDQAV--VDMPEIKKIRVGLDDSEDVYAENIVNEREHTHFYTNLS-PNVE 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+ G++ V NAL+A  +  + G+    +   L +  +   R E++        +   
Sbjct: 276 LSIPVSGDYNVKNALMACAVAYSQGLAVEQIKTPLSQFKLTANRSEWLMGKDDIQILNDT 335

Query: 362 YAHTSNSLEMILKNI----RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           Y    +++  +++N     R   +   ++V G   +  +    +   IA ++ D   +  
Sbjct: 336 YNANPSAMRAVIRNFSQLERPAVTSHKVLVLGDMLELGKYSASMHASIAEEI-DSPHIDG 394

Query: 418 DNPRSEDPEKIRAEI-IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++ + +   +   G P         ++   I+  ++ +  QD ++V
Sbjct: 395 VYLYGKEMQALARALQEKGYPEDKIHYYPEDKAALIKDLLDQVQSQDQILV 445


>gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
 gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
          Length = 458

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 144/391 (36%), Gaps = 24/391 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I  G +F+A+ G + DGH ++ +  A+GA A +V    +      
Sbjct: 20  GEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVEREVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +  P L+V +TR  L    +    K    + A+TG+SGK++V   +  I +      
Sbjct: 74  --DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQA--- 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   ++ +   +       P+ L   L          + + AS  G   + ++  + 
Sbjct: 129 ---GDAESVLATRGNLNNDLGVPLTL---LQLAPQHRSAVIELGASRIGEIAYTVELTRP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H+      +    AK  + E L   +  A++  DD        RA    
Sbjct: 183 HVAIITNAGTAHVGEFGGPEKIVEAKGEILEGL-AADGTAVLNLDDKAFDTWKARASGRP 241

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+   Q  F                +     +      L G   V NAL AA    
Sbjct: 242 LLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAH 301

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A+G+    ++  L+ L  V GR     T S G R+  D Y     S+   +  +   +  
Sbjct: 302 ALGVPLGGIVAGLQALQPVKGRAVAQLTAS-GLRVIDDSYNANPASMLAAIDILSGFSGR 360

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLA 410
            ++V+   G      +Q  R +    A  ++
Sbjct: 361 TVLVLGDMGELGSWAEQAHREVGAYAAGKVS 391


>gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
 gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
          Length = 417

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 132/391 (33%), Gaps = 46/391 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
               SDSR ++ G +FVAI G + DGH F+ +  AQGA A +V    +         +  
Sbjct: 37  TSACSDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVDHEVA--------DAGV 88

Query: 91  PILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           P +VVD+T + L   A     +      P  ++ +TG+ GK++    +  +    G +  
Sbjct: 89  PQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGITGSVGKTTTKDLMASLLSAMGETVA 148

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G  +                 +L                + A+  G   +    +   
Sbjct: 149 PVGSFNNEIGLPLTALKVNAGTRFLVAE-------------MGANHVGEIANLTSLVPPD 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                 +G  H+    + +    AK  + + L+P     ++ A+D +   +   A     
Sbjct: 196 IAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVP-GGVTVLNANDEHVAAMSGIAPG--- 251

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ------VTI-SVEGKDFDFLFPLPGEFQVYNALVA 318
            VL  G   +    + V A + +          +   EG+       + G   V NAL A
Sbjct: 252 EVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICGMHNVMNALAA 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A +   +G+    +   L  +  +          V   +R   I   +    +S++  L 
Sbjct: 312 ATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNANPDSMKAGLD 371

Query: 375 NIRTITSG-----RIIVVFGCGGDRDQGKRP 400
            +    +        I V G         R 
Sbjct: 372 GLIRWHANDERQPFRIAVLGAMPPFPMSVRC 402


>gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
 gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
          Length = 476

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 165/449 (36%), Gaps = 35/449 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S DSR ++ G  FVAI G++ DGH ++  A+  GA   +V      +D    + +
Sbjct: 26  EITGISIDSRTLEPGDAFVAITGDRLDGHDYVVSAMEAGASVALV-----GEDRLPDLPA 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +   +VVD+  + L         +    I+AVTG+ GK+     ++     SG     + 
Sbjct: 81  DGRYVVVDDPLEALRKIGVAARDRSNARIVAVTGSVGKTGTKEALRLTLAESGKVHASV- 139

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                         +  +   +   L+ + +        +  +  G     +  ++    
Sbjct: 140 -------------ASFNNHWGVPLTLARMPADADFGVFEIGMNHAGEISPLVKMVRPHVV 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-R 266
             T +   H+ +  + +    AK  +F+ L P    AI+  D+     +   A  AG  +
Sbjct: 187 IITTVQPVHLQFFDSVEQIAKAKAEIFDGLEP-GGIAILNKDNLQFDLLKFLAAAAGVSK 245

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + + G       HL+K  +      V   + G++  +     G+  V N+L      + +
Sbjct: 246 IHTFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAVLTAVVDL 305

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTIT-- 380
           G D A     L+ +    GR E      + G    I   Y     S++  L  +      
Sbjct: 306 GADLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAVLGEAPVT 365

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEKIRAEIIHGIP 437
             GR I V G   +       +  ++   + D  I  V    P      K+    + G  
Sbjct: 366 RPGRRIAVIGDMRELGSDADRLHAELLQPITDANIDAVYCAGPHMHALWKLLPHDLRG-- 423

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + E+   +E +   +  +   DV+++ G
Sbjct: 424 HYCEEAKDLEDV--LLSDVRSGDVVMIKG 450


>gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arsenophonus nasoniae]
          Length = 452

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 168/451 (37%), Gaps = 48/451 (10%)

Query: 31  NEVSSDSRH--IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           N V+++SR   I+   +F+A+ G   DGH F  QA   GA A++V    ++         
Sbjct: 23  NAVTTNSRQRPIK--GLFIALKGKHFDGHHFAEQATIAGASALLVERPLTI--------- 71

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V++TR  +   A+ +  +    ++ +TG+SGK+SV   V  I  +SG++ F   
Sbjct: 72  HCPQVIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVKEMVAAILTQSGMTLF--- 128

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  +F  D  +               +      + + A+  G   +  + ++  +  
Sbjct: 129 ---TEGNFNNDIGVPL-------TLFRLTAEHEYAVIEMGANHIGEIAYTTNMVRPDSVL 178

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA--DDAYSKEVMKRAHNAGCR 266
             NL   H++   +      AK  +F+ L  + +  I  A  D    +   K+       
Sbjct: 179 VNNLFAAHLEGFGSLTGVAKAKGEIFQGLAEQGTAVINLASHDWKNWQSYFKQQQTLWRF 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            L+   Q  F + + +       +  +            LPG+  + NAL A+ L +++G
Sbjct: 239 SLTKQQQADF-YAENIAIKSTGSEFELHTPIGVASIFLALPGKHNIANALAASALAMSVG 297

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                V   L  +  V GR   +        +   Y   + S+      +  +   RI+V
Sbjct: 298 ATLEQVSLGLAHVQPVSGRLYPIYLAPGKLILDDTYNANTGSMIAAADVLSQMPGYRILV 357

Query: 387 VFGCGGDRDQGKRPIMG-----------KIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           V   G   D+ ++               ++        I++  +   E     +  I   
Sbjct: 358 VGDMGELGDKTEKCHQEVGVATRQMKLDRVLSVGQQSVIISQQSGCGEHFASKKELIAKL 417

Query: 436 IP--------GFIEKGNRIEAIRTAIEMLNK 458
           IP          + KG+R  A+   +  L +
Sbjct: 418 IPLIKEHETVSVLVKGSRSTAMEEVVHALQE 448


>gi|312874957|ref|ZP_07734976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089702|gb|EFQ48127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
          Length = 455

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 167/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH +I
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    +      A    N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDH------ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------ITILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + +       T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +  RA        + G+      +            + ++     
Sbjct: 214 DGKFIFNGDEPL---LQARAQKLNQLQATFGFNSTDT-IYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     + + +L +   +     GR I V G   +       +   +A  L    I  D
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLI--D 387

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +        K   E + G        + EK +    I    E +   D++++ G
Sbjct: 388 ELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVMLKG 441


>gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mesorhizobium sp. BNC1]
 gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chelativorans sp. BNC1]
          Length = 477

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/416 (22%), Positives = 155/416 (37%), Gaps = 32/416 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  +   P       +  +S DSR +Q G  F AI G++ DGH F   A+A GA  +V
Sbjct: 9   DLVAAVGGRPFGALPEGVTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLAMAAGAGLLV 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           +S     +   A  R   P +VV +  K L   A+    +    ++AVTG++GK++    
Sbjct: 69  ISE----EKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGKTTTKEM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++      G                     +  +   +  +L+ L +     +     +H
Sbjct: 125 LRHALSSVGTVHA--------------AARSFNNHWGVPLSLARLPAGADFAIFEIGMNH 170

Query: 193 -GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +     +K      T +   H+ + ++      AK  +F  ++P    AII  DD 
Sbjct: 171 AGEIEPLTQLVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVP-GGHAIINRDDQ 229

Query: 252 YSKEVMKRAHNAGCR-VLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
             K +   A  AG R V   G   +    L +     +   VTI V G++       PG 
Sbjct: 230 RFKLLADMAAEAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTS 366
             V NAL   G     G D + +L  L       GR     +G       +  + Y    
Sbjct: 290 HMVQNALSVIGAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIGEGMFTLIDESYNANP 349

Query: 367 NSLEMILKNIRTIT---SGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
            S++  L+ + +      GR I V       G   ++    +   IA    DI ++
Sbjct: 350 ASMKAALQVLDSSPVSNGGRRIAVLGDMLELGVHSEKLHAALGDIIAGTKTDILLL 405


>gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas aeruginosa PAb1]
          Length = 458

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 144/391 (36%), Gaps = 24/391 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I  G +F+A+ G + DGH ++ +  A+GA A +V    +      
Sbjct: 20  GEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEVAAKGAVAALVEREVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +  P L+V +TR  L    +    K    + A+TG+SGK++V   +  I +      
Sbjct: 74  --DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQA--- 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   ++ +   +       P+ L   L          + + AS  G   + ++  + 
Sbjct: 129 ---GDAESVLATRGNLNNDLGVPLTL---LQLAPQHRSAVIELGASRIGEIAYTVELTRP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H+      +    AK  + E L   +  A++  DD        RA    
Sbjct: 183 HVAIITNAGTAHVGEFGGPEKIVEAKGEILEGL-AADGTAVLNLDDKAFDTWKARASGRP 241

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+   Q  F                +     +      L G   V NAL AA    
Sbjct: 242 LLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAH 301

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A+G+    ++  L+ L  V GR     T S G R+  D Y     S+   +  +   +  
Sbjct: 302 ALGVPLDGIVAGLQALQPVKGRAVAQLTAS-GLRVIDDSYNANPASMLAAIDILSGFSGR 360

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLA 410
            ++V+   G      ++  R +    A  ++
Sbjct: 361 TVLVLGDMGELGSWAEEAHREVGAYAAGKVS 391


>gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555]
 gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555]
          Length = 463

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 171/448 (38%), Gaps = 46/448 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S+DSR +Q G IF+A+ G K +G+ ++  A  +GA   +V     ++  S  I   T
Sbjct: 27  KNISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKGASICIVD---EVKFESEKISEFT 83

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I+ V N    L   A     K    I+ VTG+ GK++    +  +           G  
Sbjct: 84  TIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTKDIIAAVL----------GVK 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +       P  L K  +   S  V  + +  +  G   + +   +      T
Sbjct: 134 FKVFKTEGNFNNQIGLPHMLFKLDN---SYEVAVLEMGMNQRGEIHNMVKAARPDIAVIT 190

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ R HI    +++   NAK+ +  +   KE+  II +D+    +++         +  V
Sbjct: 191 NVLRAHIGNLGSRKNILNAKLEI-TDFFSKENTLIINSDN----DLLSTLEEKNFTLNRV 245

Query: 271 GY-QGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           G  +   +    +    +  +  +       +  FL  +PG++ + N+L+A      + +
Sbjct: 246 GLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIVNSLLAISCGRLLNM 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
               + E ++ + +   R E +    +   I  D Y     S++  +  ++   S R I 
Sbjct: 306 SYDEIREGVKNIKLTSMRMEII--RKKEFTIINDCYNANPESMKAAIDVLKEFKSNRKIA 363

Query: 387 VFGCGGDRDQGKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           V G  G+  +    +  ++         D+ I   +          + +   G     +K
Sbjct: 364 VLGTMGELGEEAYKMHQEVGMYAGEKDIDLLIGIGEY---------KKDFERGFKSTNKK 414

Query: 443 G-----NRIEAIR-TAIEMLNKQDVLVV 464
           G     ++ E ++   ++ + + D ++V
Sbjct: 415 GNFMGFDKYEDLKDFILKYIERGDTILV 442


>gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
 gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
          Length = 452

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/464 (17%), Positives = 178/464 (38%), Gaps = 39/464 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           + + +  + +N   I  ++  +   N+VS D+R +  G IF+AI G   +G+ FI  A+ 
Sbjct: 1   MTFNEIAKAVNGKVI--LRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQ 58

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA   +V   +  +D   + + +  IL+V++T+K L   A          ++A+TG++G
Sbjct: 59  KGAALCIVDEIHFEKD---SFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S       + +       +     T  +F                      S  V  +
Sbjct: 116 KTSTKDITASVLRS------KFRVFKTSGNF-------NNEIGLPLMIFKLDKSYEVAVL 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  +      +     +      TN+G  HI+  ++++    AK+ +  +   K++  I
Sbjct: 163 EMGMNHFNEIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEI-TDFFTKDNLLI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D+   K+   ++ N     L      K  +L       ++      V+G+    +  
Sbjct: 222 VNGDNDLLKKHEFKSINVLKTSL-----NKEGNLNAENLCLHEGNSEFEVQGEK--LVLN 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           +PG+  + NA+++    + +G+    + + L+ L +   R + V  N     I  D Y  
Sbjct: 275 MPGKHNIENAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLDIV--NGENIVIVDDSYNA 332

Query: 365 TSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           + +S+   +   + +   R I V       G    +  + +      +  D  +V  +  
Sbjct: 333 SPDSMIAAIDVTKNLKGNRRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFS 392

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++        +       F E     E ++     + K D+ ++
Sbjct: 393 KA------YLDGYKDKENFSEFETNEELLKFVKTDIRKGDIFLI 430


>gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase.
           [Bacillus cereus E33L]
 gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus E33L]
          Length = 454

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 194/486 (39%), Gaps = 46/486 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 4   MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHEYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA + +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 57  KEAMDNGAISSLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   ++ I + +       G  ++                +L          
Sbjct: 111 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILE------- 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  S  G  ++     +      T +G+ H++   +++    AK+ + + L  +
Sbjct: 164 ------MGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGL-RE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +   D+            +G    + G +     L       ++  V   +     
Sbjct: 217 NGLFLYNGDEPLFSR---NNKTSGVNCKTFG-EKDTNDLFPTNVQLDEYGVHFKLNHTKI 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+ T   G  I  
Sbjct: 273 QYDVPLHGKHNIFNTIVGIAVGQFYKVPTEKIQEALQQINITQMRFQFL-TAKIGFTIIN 331

Query: 361 D-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIV 415
           D +  + +S++  ++ ++ +    + I+V G   +   + +     +GK+  + +   + 
Sbjct: 332 DAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEESIQYVF 391

Query: 416 TDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG-KGHET 471
           T       +  KI AE        G ++  +    I    ++++ K+DV+++ G +G   
Sbjct: 392 T-----YGELAKIVAEEASKKYDTGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGMAL 446

Query: 472 VHIVTN 477
             IV N
Sbjct: 447 EEIVQN 452


>gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 460

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 142/402 (35%), Gaps = 31/402 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L   +       +  F  Q     +  + +DSR +Q G +FV + G + DGH F+ +A +
Sbjct: 3   LTLHEIANATGAVGDFDPQTP--PVCRIQTDSRAVQPGDLFVCLSGERFDGHNFVDEAAS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA AI+             + +  P+L+V +T   L   A          ++AVTG++G
Sbjct: 61  KGASAIIAQQPL------FDLSAGIPVLLVQDTLHALGQLAGYWRRTFGGTVVAVTGSAG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S    +  +  R G ++      +       +              LS+   +    +
Sbjct: 115 KTSTKECIAGVLGRRGQAAKSYKNWNNRLGVPLN-------------ILSFSGEEEFWVL 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G        I       TN+   H++           K+ L + L       +
Sbjct: 162 EAGISEPGEMAALASIIAPDVAVVTNVAPVHLEGLVDVPTVVEEKLHLCDHLT-HNGTLV 220

Query: 246 IYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +  D     E+ +RA +A C     SV  +      + +       +  +S +G   +F 
Sbjct: 221 LSVDYP---ELSQRAASAVCPKTYFSVQAEKAPYWCEPIQDPEVYGRFQLSCDGVRTEFD 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P   ++   N   AA +   +G++   ++  L+   +   R + +     GG +  D Y
Sbjct: 278 LPWAADYMAENLAAAACVGHRLGLEVEEIVAGLQTAELPEHRGQLLTLP--GGIVIDDAY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
               +S++  ++           +V   G   + G       
Sbjct: 336 NANPHSMQRAIRAAARRAG-ERPLVLVLGEMAELGPDAEAAH 376


>gi|171742536|ref|ZP_02918343.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283456378|ref|YP_003360942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278150|gb|EDT45811.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283103012|gb|ADB10118.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 515

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 110/495 (22%), Positives = 191/495 (38%), Gaps = 44/495 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +     ++ D+R ++ G + V        G     F+     +G  A V    +S     
Sbjct: 38  DVPFTHITYDTRTVREGTLLVC------KGRFRPEFLDGLKERGLVAYVSERDFSD---- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRS 140
               +  P L+V++ RK LSL ++  YG  P+N L V G +G       A F Q I    
Sbjct: 88  ---HTEVPGLIVNDARKALSLLSAAFYG-MPQNELTVIGITGTKGKTTTAYFTQAILNAY 143

Query: 141 G---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                + F             ++ LTTP  +   + +   +  G+ ++ +E SS     +
Sbjct: 144 SNGRCALFSSVDNCLDGHTYVESELTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVN 203

Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           R+ G+    G+F N+  DHI    H T + Y   K     +L       ++ AD  ++  
Sbjct: 204 RVHGLTFDVGAFLNISPDHISDIEHPTFEDYLYCK----RQLAYHARAFVLNADADHADL 259

Query: 256 VMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
           + + A  AG  +     +         L    +       +I+  G D  +F   L G+F
Sbjct: 260 IREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSAFSIAANGHDLGEFSLSLAGDF 319

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A  L    G+       H  +   VPGR E            VDYAH   S+ 
Sbjct: 320 NYANALAAVALAHEAGVPFDSAAMHAMESVHVPGRMELFTGTDGDTVAIVDYAHNYTSVR 379

Query: 371 MILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++  +         RI +V G  G++   +R  + + A D     + T ++  +E    
Sbjct: 380 ALIDFVEQRYGERKPRITLVAGSAGNKAFDRRQEIVEAAQDRIARFVFTAEDTDTEPYID 439

Query: 428 IRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKGHETVHIVTNGEK 480
           I  E++  +           +R++AI +A+E  +     DV+++ GKGHE      N   
Sbjct: 440 ICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGLDVILIIGKGHERWIKDLNSHV 499

Query: 481 KMSVDCDIIREILGL 495
               D  ++  +L +
Sbjct: 500 AYEGDDCVVERLLNV 514


>gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
 gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
          Length = 455

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 178/480 (37%), Gaps = 55/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 54  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G                 + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQG--------------NYNNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  I K      T +G  H+++  +++     KM++ +  
Sbjct: 150 EDTEKIVLEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLEFFGSREKIAEGKMQITDG- 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  +   I   D      ++     A    +  G+      L+       K  +T     
Sbjct: 209 MSSDGILIAPGDP-----IIDPYLPANQMTIRFGH---DQELQVTELKEEKHSLTFKTNA 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  
Sbjct: 261 LEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++ +IL+    I     G+ I +     +  +    +  ++ + +   +
Sbjct: 320 ILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDS 379

Query: 414 IVTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAG 466
           I T        E+  ++ +++      +  K N+      + +    + L ++D +++ G
Sbjct: 380 IDTLICYGQDIEELAQLASQMFPIGKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKG 439


>gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           6-diaminopimelate--D-alanyl ligase [Rickettsia
           montanensis]
          Length = 449

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 153/411 (37%), Gaps = 36/411 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKQVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           + +TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIVITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G  +  +  +K      T
Sbjct: 135 NNKLGMLINLASMADDTEYAIFEL-------------GMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLS 269
           N+   H+++  + +    AK  +F     K   A+I AD     +++    N +   + S
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFANF-SKNDIAVINADTNCYNKILSILKNLSITDIHS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   K    + +   +  +QV +   +  K  D   P        N      +   +G 
Sbjct: 241 FGRSSK-TSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGK 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  +   HL  +    GR E +  N +  R+  D Y  +  S++  L+ ++ + +     
Sbjct: 300 DIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTA 357

Query: 387 VFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSED---PEKIRA 430
           + G   +  +  + +  K+   + D       +   N +  D   P KI  
Sbjct: 358 IIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAK 408


>gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
 gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
          Length = 425

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 132/388 (34%), Gaps = 32/388 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +D+R I    IF A+ G+  +G+ +  +A+ +GA   VV               N 
Sbjct: 14  STVCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEK--------EYAINN 65

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+  + L         +    ++ +TG++GK++    ++ + Q+   +   +G  
Sbjct: 66  KFILVDDVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNL 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                         +   G  H+   A    L +          G  T
Sbjct: 126 NNHIGVPLTLLTIQKDTEI------AIVEMGANHLKEIAFLSSLAE-------PDYGYIT 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++   + +     K  L++ L   +    + ADD        +    G  V  +
Sbjct: 173 NFGKAHLEGFGSTEGVIQGKSELYKYLTTNQKHVFLNADDP------IQESKLGTYVKKI 226

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G+     +  K+  +     VTI V  KD      L G +   N   A  +     I   
Sbjct: 227 GFSSNNSNYFKIELLSADPFVTIKV--KDITITTKLVGAYNFTNCCAAIIMGKYFNIALP 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
           L+ E +E       R + +     G +I +D Y     S+   L N   I +   IV  G
Sbjct: 285 LIKEAIEGYTPANNRSQIL--EQNGYKIILDAYNANPTSMAAALDNFNGIKAAHKIVFLG 342

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTD 417
              +           IA     +   T 
Sbjct: 343 DMFELGTTAETEHQHIADKACKMNFTTT 370


>gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
 gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
          Length = 472

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 157/458 (34%), Gaps = 48/458 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R I  G +FVA+   + DGH F+  A+ +GA A +V+           +  + 
Sbjct: 24  SGVSIDTRTIAKGDLFVALADIR-DGHDFVGMALDKGAAAALVT------HRPEGVADDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V N  K L    S    +    ++ +TG+ GK+S    ++ + Q  G         
Sbjct: 77  PLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKTSTKEMLRTVLQAQGKIHA----- 131

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
                       +  +   +   L+ +       +     +H  +   L  + +L A   
Sbjct: 132 ---------AEASYNNHWGVPLTLARMPQDTEFAIIEIGMNHAGEIAPLAKMAQLDAAMI 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++   +       K  + E L     P I   D      +   A  A  +V  
Sbjct: 183 TTVAPAHLEAFGSVAEIAVEKAAITEGL---NGPLIANRDIETWDVIRDVAAAAETQVTW 239

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G Q     L  V    +   +     G        + G     NAL A  +C A+G D 
Sbjct: 240 FGAQADAFVLTDVRLADSATVIVAEFNGTPLLIKLSVAGRHFAMNALGAVAVCDAVGADI 299

Query: 330 ALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDY--AHTSNSLEMILK-------- 374
           A     +       GR           NS       D        S+   L+        
Sbjct: 300 ARAAMDMANWLPPAGRGTRETLRLDTQNSDDTVDLYDDAFNANPTSMRASLEVLAATQPR 359

Query: 375 -NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDPEKIRAE 431
            N+  I  GR I V G   +    +  +   +A D +   + +V    PR      +  E
Sbjct: 360 DNVGRIVKGRRIAVLGDMLELGSAEMQMHADMAADPSLPAVTVVHCVGPRMRSLYDVLPE 419

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
              G   ++E     E    A  +++  DV++V G KG
Sbjct: 420 GQRG--QWVEIAG--ELAGKAHSLIDAGDVILVKGSKG 453


>gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
 gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 152/393 (38%), Gaps = 25/393 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +   + VS+DSR + AG +FVA+ G + D H F+PQ   +   AIV          +   
Sbjct: 20  DAAFDGVSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNVAAIVAE--------TVPD 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L+V +TR  L   A     +    ++ VTG++GK++V   +  I + +      
Sbjct: 72  GLTVPALIVQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEMIAAILEAA---CGV 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +T  +F  D  +            + +   G+ H    A    + +          
Sbjct: 129 DNYLATRGNFNNDIGVPLTLMRLQKTCKAAVIELGMNHPGEIAVLSAIAE-------PTV 181

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N  R+H ++  + +A       +   L P +  A+  ADD ++    + A  A  +
Sbjct: 182 GLVNNAQREHQEFMASVEAVAQENGAVLAGL-PADGIAVFPADDEFTPLWRQLA--AQRK 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VL+ G+           A      + IS   + F       G   V NAL A    +AIG
Sbjct: 239 VLTFGFSDDADVRCSYSANAFGSDMEISAGRQQFTVALSAAGVHNVRNALAAIACALAIG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           I +  +   L+    V GR +     + G  +  D Y    +S+   +  +  +++ RI+
Sbjct: 299 IATDAIARGLQAFAPVSGRLQR-KLAANGALVIDDTYNANPDSVRAAIDVLAQMSAPRIL 357

Query: 386 VVFGCGGDRDQG--KRPIMGKIALDLADIAIVT 416
           V+   G   + G      +G  A   +   ++T
Sbjct: 358 VLGEMGEVGNDGRQYHEEIGAYARAKSIEYVLT 390


>gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
 gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 456

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 154/451 (34%), Gaps = 39/451 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q            I  + +DSR I AG +FVA+ G   DGH F+ Q           +
Sbjct: 17  IAQALGLDTTHPNLPITGICTDSRQIAAGNLFVALRGETFDGHQFVDQ---------AAA 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +        A + S+ P L V NT             + P  ++AVTG+ GK++    + 
Sbjct: 68  AGAIALMVEAPLSSDLPQLQVANTLSAYQRLGQWWRQQCPAKVIAVTGSVGKTTTKEMIA 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +    G          T ++F  +  +           L          + +   + G 
Sbjct: 128 AVLSHYGA------VLKTEANFNNEIGVP-------KTLLQLEPHHQFAVIEMGMRARGE 174

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   +      TN+G  HI    +++A   AK  L  E +P    A++ AD     
Sbjct: 175 IALLSQIAQPDVAVITNVGTAHIGRLGSREAIAQAKCELLAE-MPPGGTAVLNADSPLLL 233

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             + +  +   R ++ G +G  +              T+ V G+ +    PL G     N
Sbjct: 234 PTVAQVWSG--RTITYGLEGGTLRGIYQPPQ------TLHVGGRTY--TVPLAGAHHALN 283

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A G+  A+ ++S  +   L  L +  GR            +   Y     S+   L 
Sbjct: 284 FLAALGVLQALDVESDRLPVQL-TLELPSGRGGRYRLEPDILLLDETYNAGLESMVAALH 342

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R++   R + V G   +          ++   +A + +   D     D  +  A +  
Sbjct: 343 LLRSLPGQRHLAVLGPMRELGAFSLSFHEQVGATVAQLDL---DGLFILDQGEEGAALAQ 399

Query: 435 GIPGF--IEKGNRIEAIRTAIEMLNKQDVLV 463
           G       + G+  E +   +  L   D L+
Sbjct: 400 GAGQIPTQQFGSHEELVEYLLRELQAGDRLL 430


>gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           parahaemolyticus 10329]
          Length = 454

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 174/460 (37%), Gaps = 37/460 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I +++   +   +  I+ VS+D+R I  G +FVA+VG + D H F  QA   GA A++V 
Sbjct: 9   IAEITGGALFGNDLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQASEAGAGALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         N P +VV +T+  L   AS ++       +A+TG+ GK++V   V 
Sbjct: 69  KRLDV---------NAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F      T  +F  D  +           L          + + A+  G 
Sbjct: 120 SILQQKGNVLF------TAGNFNNDIGVP-------LTLLRSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    +K       N+   H++   + +    AK  +++ L      AI+  D     
Sbjct: 167 IAYTTQLVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGL-QAGGIAIVNLDSNGDA 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQ 311
                  +      S        +   V      +    + IS + ++ +    + G+  
Sbjct: 226 LWQSVLADKKVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + + +G     +   L  L+ V GR +    +S    I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  +      R +++       ++     R +    A    +  +    +       KI
Sbjct: 346 AVDLLGAFHGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD------AKI 399

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGK 467
            +E+ HGI  F      I+ I+  ++  ++ Q  ++V G 
Sbjct: 400 ISELCHGI-HFETHQEMIDYIKQHLDQTVSDQHTILVKGA 438


>gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 459

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 165/420 (39%), Gaps = 43/420 (10%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I ++  E+   L   I   ++ + KI  +S DSR I+   +++ IVG K DG +FI + 
Sbjct: 1   MIERNLEEIAKMLGGEISNPKYSKTKIKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA A ++   Y +    +      P + V +T+K L   A     +    I+A+TG+
Sbjct: 61  ENSGAVAFLIDENYKIPKSIS-----IPFVKVSDTKKALQDLARAYRDELDIKIIAITGS 115

Query: 124 SGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +GK++  + +  +        +  G  + +IG   T+  F+   +               
Sbjct: 116 NGKTTSKNLIHSVLSEKYKVEKTQGNLNNEIGVPLTLLDFSDKTQ--------------- 160

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +  V +     G      +  K      TN+G  H+   ++++    AK+ + E 
Sbjct: 161 -----IGVVEMGTEDFGEISLLTNIAKPDMAMITNIGDAHLLKLKSREGIAKAKLEILEG 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L   +   I   DD   K+V+  ++    + +S G +   ++ K      +      S E
Sbjct: 216 L-KADGTFIYNGDDEILKKVLP-SYTIKQKTISYGKE-DGVNFKVYPKEFSSTYTKFSYE 272

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +D+    PL G  QVYN  +A  +     +    +   L K+     R E +     G 
Sbjct: 273 NEDYKV--PLLGTHQVYNGALAVLIGKLFNLSYEEIDNGLAKVSNNANRNELI--ERNGF 328

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            I  D Y     SL+  L+    +      IVV G   +   G++ +  K  LD+    I
Sbjct: 329 DILDDAYKSNPQSLKQGLELAGFLDGYLNKIVVLGDMLELGDGEKNLHYKSGLDIKPKKI 388


>gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
 gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
          Length = 429

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 157/416 (37%), Gaps = 67/416 (16%)

Query: 1   MKLQDLIYKDFPE--LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+ DL+   FPE  ++  +           I +V  DSR ++ G +F AI G    G+ 
Sbjct: 1   MKIIDLLRDYFPEKKILESMD----------IKDVCMDSREVKKGSLFFAIKG----GNN 46

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            + +AI  GA  ++             +  +   +  ++T  F+   A      +   ++
Sbjct: 47  HVEEAIKNGAVLVIYDRKD-------LLIQDENTIFTEDTVNFMQKLARDYRKSNQTKVV 99

Query: 119 AVTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           A+TG++GK++    +  +        +  G  +  IG   TI +                
Sbjct: 100 AITGSNGKTTTKDIIYSVLSQRFRTKKTQGNHNNHIGLPYTILNAQP------------- 146

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                     V  + +  S  G             G  TN+G  H++Y + ++  F AK 
Sbjct: 147 -------EDEVLVLEMGMSDFGEIDLLCSIALPDYGIITNIGESHLEYLKNKENVFKAKG 199

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L E +  K +   ++ DD Y K++           + VGY G     K    I N +  
Sbjct: 200 ELLEYVHSKNTI--VFGDDYYLKDI---------HGIKVGY-GDENTFKISEFIENDKGA 247

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              + GK +    P+ GE  V NA  A  L + +G+  + + + L+ + + P RF+ +  
Sbjct: 248 EFKLAGKTY--RIPINGEHNVINASFAVVLGLEMGLSLSEIEKGLQGVELTPMRFQKI-E 304

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI 405
             +   I   Y     S+++ ++    + +     I+V G   +  +        I
Sbjct: 305 KGKKLYINDAYNANPTSMKLAIETFDKLYNKRACKIIVLGDMLELGEKSEEYHKNI 360


>gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 434

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 134/378 (35%), Gaps = 26/378 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G IF A+ G+  +G+ +   A+ QGA   VV            + +    
Sbjct: 16  VSTDSRKIEPGCIFFALRGDNFNGNQYAQSALEQGASYAVVDDP--------ALATQDRC 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+    L   A     +    I+A+TG++GK++    +  +        +  G    
Sbjct: 68  IVVDDVLDTLQALAKFHRRQLHIPIIAITGSNGKTTTKELIAAVLGSQYPMHYTQG---- 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L +    L    V  + + A+  G         +   G  TN+
Sbjct: 124 ------NLNNHIGVPLTLLQLDFRL---EVAVIEMGANHQGEIDQLCRIAEPTHGLITNI 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  L+  L   +  A +  D+ +  E+            S   
Sbjct: 175 GKAHLEGFGGIEGVKKGKSELYRYLAETDGLAFVNNDEPFLVELSSGVRKRIFYERS-DD 233

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDS 329
                   +V  +  +  + ++   ++   +     L GE    N   A  L     +  
Sbjct: 234 PAPNHKPYEVVLLQLQPFIRVAFLDENNQLIEAGSKLMGEHNFQNIKTAVTLGKYFKVPG 293

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   +E  +    R ++V   +    +   Y    +S+E+ L++     + + I + G
Sbjct: 294 KKIKAAIENYNPNMNRSQWVSWGTNSI-LLDAYNANPSSMEVTLRSFSESPASQRIAILG 352

Query: 390 CGGDRDQGKRPIMGKIAL 407
              +  +       ++A 
Sbjct: 353 DMFELGESSAVEHERVAQ 370


>gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
 gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
          Length = 470

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 144/380 (37%), Gaps = 24/380 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ IN+VS+D+R      +F+A+ G + D H FI QA+AQGA A++       Q     
Sbjct: 23  PQQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQALAQGAIAVITQQPLDEQ----- 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               TP ++V++TR  L L  + +  +     +A+TG++GK++V   +  I         
Sbjct: 78  ----TPHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGKTTVKEMLAAI--------- 124

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG    + + A +       P+ L   L   +      V + A+  G   +     +  
Sbjct: 125 -IGQQYNVLATAGNFNNDIGVPLTL---LRLEAQHQYAVVELGANHAGEIAYTTSLTRPD 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+   H++   +      AK  +F+ L P++  AI   +  Y             
Sbjct: 181 VAILNNVSAAHVEGFGSVHGVAKAKTEIFQGL-PEDGLAITPYESEYLPCWRNVRAGKRL 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +   +  Q      +       +    +S+  + +     L G   V NAL A+   + +
Sbjct: 240 QTFGLSEQADVRASQIELNSLGQPTFKLSINDQHWTVSLQLSGLHNVKNALAASAAALEV 299

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ +  +   L  +  V GR   +        I   Y  +  S +  L  + +   G  I
Sbjct: 300 GMSAEEIATGLANVAPVKGRLTPMQLTENVTVIDDTYNASVASTKAALDLLGSY-QGTTI 358

Query: 386 VVFGCGGDRDQGKRPIMGKI 405
           +V G   +     R     +
Sbjct: 359 MVLGDMAELGAEARAYHEDV 378


>gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 454

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/511 (18%), Positives = 184/511 (36%), Gaps = 74/511 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +I   ++ +  + ++  DSR I+ G +F+ + G + DGH FI
Sbjct: 1   MKLS---LYEVAKVVEAQNII-SEFDDVPLKQIEFDSRRIEKGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A   GA A                 S  P ++V +  K     A     K   +++AV
Sbjct: 56  EKAFENGAVATFSEKEI----------SGHPYILVKDCLKAFQELAKYYIEKMRLDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    ++ +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIEAVLATTYKTYKTQG--------------NYNNEIGLPYTVLHMPDD 151

Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L + ++      T +G  H+++  +++     KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIHLLSEIVQPHIAVVTLIGEAHLEFFGSREKIAQGKMQITDG-MN 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                I   D   D Y  E           V+  G   +   +       +K  +  +  
Sbjct: 211 SHGILIAPGDPIIDPYLPE--------NQMVIRFG---ENQEIFVNSIEESKNSLRFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PL G++   NA++AA +   + +    +LE LE + +   R E+    S G 
Sbjct: 260 VLEQALTLPLSGKYNAINAMLAAYVGKLLAVAEEDILEALEHIQLTGNRTEW-KKASNGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIM----GKIALD 408
            I  D Y     ++ +IL+    I     G+ I +     +       +       +  D
Sbjct: 319 DILSDVYNANPTAMRLILETFAQIVPNQGGQKIALLADMKELGPSSVDLHCQLIQALNPD 378

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAI-RTAIEMLNKQDVLV 463
             D  I    +   E   ++ +++      F     E  ++ E +     E+L   D   
Sbjct: 379 DIDHLIFYGQD--IEPLAQLASQMYPIGKVFFFKKTEAEDQFEDLYHHVQEILGSND--- 433

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                     I+  G   M ++ +I+  +L 
Sbjct: 434 ---------QILIKGSHSMHLE-EIVNRLLA 454


>gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
 gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
          Length = 449

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 166/447 (37%), Gaps = 45/447 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKYK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++   Q   L     G  
Sbjct: 76  -IILVDDCFEALQKIALYKRENSKAKFIAITGSVGKTSTKEALKVSLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G  +  +  +K      T
Sbjct: 135 NNKLGMLINLASMADDTEYAIFEL-------------GMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLS 269
           N+   H+++  + +    AK  +F     K   A+I AD     +++    N +   + S
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFANF-SKNDIAVINADTNCYNKILSILKNLSITDIHS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   K    + +   +  +QV +   +  K  D   P        N      +   +G 
Sbjct: 241 FGRSSK-TSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGK 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  +   HL  +    GR E +  N +  R+  D Y  +  S++  L+ ++ + +     
Sbjct: 300 DIEIAANHLANISPTKGRGEMI--NIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTA 357

Query: 387 VFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSED---PEKIRAEIIHGIPGF 439
           + G   +  +  + +  K+   + D       +   N +  D   P KI          +
Sbjct: 358 IIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIA-------KKY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +  E I    ++    +++++ G
Sbjct: 411 FKNVD--ELIMHITDLFEGNELILIKG 435


>gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 157/453 (34%), Gaps = 48/453 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWQVSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSR------IPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +  +L+VD+ +  L         +    ++AVTG+ GK+S    +  +    G +   
Sbjct: 73  GEDGRLLLVDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHAS 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
           +               +  +   +   L+ +       V     +H G         +  
Sbjct: 133 V--------------ASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++           K  + E L P    A++ AD A +  +  RA   G 
Sbjct: 179 VAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEP-GGVAVLNADIAEADIL--RAAARGA 235

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R LS G   +   L  V                   F     G     NAL A   C A+
Sbjct: 236 RQLSFGRAAQDYRLTGVEVADGMTHARADTPAGPVSFTLQSAGTHFAMNALGALACCDAL 295

Query: 326 GIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           G D+   L+ LE+     GR   E +        ++ D Y     S+   L+ +      
Sbjct: 296 GADAGQSLQGLERWTPYKGRGARETISLAGGPVTLFDDSYNANPTSVGAALEVLAGTPGT 355

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI--RAEIIHGIPGFI 440
           R +   G   +    + P+   +A             P  E  +++     ++  +   +
Sbjct: 356 RRVAFLGDMKELGPEELPLHAGLAAL-----------PAMERVDQVHCIGPLMRALFDAL 404

Query: 441 EKGNR-------IEAIRTAIEMLNKQDVLVVAG 466
            +  R        E +     ++   D ++V G
Sbjct: 405 PEAKRGRWTETGAEMLAELPALVAPGDAVLVKG 437


>gi|225009973|ref|ZP_03700445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
 gi|225005452|gb|EEG43402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
          Length = 428

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 128/381 (33%), Gaps = 33/381 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+DSR I++  I+ A+ G + +G+ F   A+  GA   VV +A              
Sbjct: 14  KSVSTDSRKIESNSIYFALSGERFNGNDFAIDALNNGALYAVVDAAKYKDHPG------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + V +  K L    +         ++++TG++GK++    + ++  +   +S  +G  
Sbjct: 67  -CIYVADVLKALQALGTYHRNYCKAKVISLTGSNGKTTTKELIYKVLSQKYNTSATLGNL 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +              S  +       +   G  H         L Q          G  T
Sbjct: 126 NNHIGVPLSLLNIKESTEF------AVIEMGANHQKEIEFLCALAQ-------PDFGCIT 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     Q     K  L++ L+      +   +D     +   A       +S 
Sbjct: 173 NFGKAHLEGFGGVQGVIKGKSELYQYLIANNKTILYNNEDP----IQAGALRQYDHSISF 228

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G   +  +   +     K   ++ ++ +D      L G +   N ++AA +     +   
Sbjct: 229 GKDQESTYTTSIL----KSNTSVKIQFQDTTINTSLYGAYNATNCMIAASIGRHFDVPIQ 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVV 387
            +   +E       R E          +   Y    +S+E+ +K+   +T       IVV
Sbjct: 285 DIKNAIESYKPNNNRSELRQIGPHM-LVLDAYNANPSSMEVAIKHFSELTHSSLKNKIVV 343

Query: 388 FGCGGDRDQGKRPIMGKIALD 408
            G   +  +        I   
Sbjct: 344 LGDMFELGETAAKEHQAIVAQ 364


>gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
          Length = 449

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 167/447 (37%), Gaps = 45/447 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G  +  +  +K      T
Sbjct: 135 NNKLGMLINLASMADDTEYAIFEL-------------GMNHKGEIRELVQILKPNITMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLS 269
           N+   H+++  + +    AK  +F     K   A+I AD     +++    N +   + S
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFANF-SKNDIAVINADTNCYNKILSILKNLSITDIHS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   K    + +   +  +QV +   +  K  D   P        N      +   +G 
Sbjct: 241 FGRSAK-TSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGK 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  +   HL  +    GR E +  N +  R+  D Y  +  S++  L+ ++ + +     
Sbjct: 300 DIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTA 357

Query: 387 VFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSED---PEKIRAEIIHGIPGF 439
           + G   +  +  + +  K+   + D       +   N +  D   P KI          +
Sbjct: 358 IIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIA-------KKY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +  E I    ++    +++++ G
Sbjct: 411 FKNVD--ELITHITDLFEGNELILIKG 435


>gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
 gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
          Length = 454

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 155/410 (37%), Gaps = 44/410 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  +++  L+    Q+ +  I+ +  DSR I +G +F+ + G + DGH FI
Sbjct: 1   MKLS---FHEIADVVGALNDV-SQFEDSPIHSIEFDSRKIASGDLFLPLKGTR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   GA A           FS     + P ++V +        A     K   +++AV
Sbjct: 56  PTAFENGAVAT----------FSRIELDDVPYILVKDPLAAFQTLAKYYLEKMAVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +       G  +              S   L          
Sbjct: 106 TGSNGKTTTKDMIHDVLATTYKIYKTQGNYNNEIGLPYTVLHMPDSTQKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D   L  I +   G  T +G  H+++  +++     KM++    + 
Sbjct: 156 ----VLEMGQDHLGDIDLLSKIAQPKIGIVTLIGEAHLEFFGSREKIAQGKMQI-ANGMA 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++        +V+  G       +     +  K  ++ +V   D
Sbjct: 211 KDGTLIVPAD-----KIINDYLPDNQKVVRFG---PDQDIFLTELVERKDSLSFAVNFMD 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A  +    G+    +   L+ L +   R E+    S G  I 
Sbjct: 263 GLIELPVTGKYNATNAMLATYVGQLEGVADEAIRSALKNLVLTKNRTEW-KKASNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKI 405
            D Y     ++++IL+   T+     G+ I +     +  +    +  ++
Sbjct: 322 ADVYNANPTAMKLILETFLTLPANEGGKKIALLADMKELGKDSVQMHSQM 371


>gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 456

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 161/423 (38%), Gaps = 48/423 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  +N++  DSR I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEIAKVVEAQNSLSEFDDVPLNQIEFDSRKIVKGDLFLPLKGER-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A  +GA A                    P L+V++        A     K   +++
Sbjct: 54  FIELAFEKGAAATFSEHPIE----------GKPYLLVNDCLHAYQTLAKYYIEKMRLDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK+S    ++ +   +  +    G                 + I L   + ++ 
Sbjct: 104 AVTGSNGKTSTKDMIEAVLATTYKTYKTQG--------------NYNNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +    V      H  D H L  I +      T +   H+++  +++     KM++ + +
Sbjct: 150 DETEKVVLEMGQDHMGDIHLLSEIAQPRIAVLTIVAEAHLEFFGSREKIAQGKMQIVDGM 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++   D     ++         V+  G +G+ I +K +     K  +T +   
Sbjct: 210 --DSHGILLAPGDP----IIDPYLPDNQMVIRFG-EGEEIFVKDIKED--KNSLTFTTNV 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D     PL G++   NA++AA +   + +    ++E LE + +   R E+    + G  
Sbjct: 261 LDQAVTLPLSGKYNATNAMIAAYVGKLLAVSDEDIVEALESVQLTKNRTEW-KKAANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++++IL+    I +   G+ I V     +       +  K+ + L+   
Sbjct: 320 ILSDVYNANPTAMQLILETFSNIPNNPDGKKIAVLADMKELGPDSVSLHSKLIMSLSPEK 379

Query: 414 IVT 416
           I T
Sbjct: 380 IDT 382


>gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 460

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 159/454 (35%), Gaps = 39/454 (8%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  ++  V +DSR   +G ++VA VG   DGH FI  AIA GA   +V++        
Sbjct: 18  GADVVVSGSVETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVCAIVTN-------P 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQR 139
           +        ++V++    L L A     +        I+ +TG+ GK++       I  +
Sbjct: 71  SIGNPEHTRILVEDATYALGLLAKVHIERLRATGDLRIVGITGSVGKTTTKDLTAGILAK 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +   +   +              +  YL              + + AS  G  ++  
Sbjct: 131 FAPTVAPVASFNNEVGMPLTALKADENTRYL-------------VLEMGASGIGHLEYLT 177

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G   ++GR H+    +      AK  L E  + +    I+  DD     +   
Sbjct: 178 GLVSPDLGVELSVGRAHLGGFGSVAGLARAKAELVEG-VKENGLVILNLDDPNVAAMETV 236

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           AH       ++G +   I+ + V               G+       L G  QV NAL A
Sbjct: 237 AHTPVVYFSALGNEKADIYARNVTLDEFSHASFEAVTTGEVIPVHLGLVGAHQVNNALAA 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--N 375
             +C   G++   ++  L  +         +   SRG     D Y    +S++  L    
Sbjct: 297 ISICQGFGLELPEIVAALNGMKAASPHRMSI-VESRGATFIDDSYNANPDSMKAGLAVLA 355

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN---PRSEDPEKIRAEI 432
            +   + + I V G   +  +    +  ++      + + T  +      E  ++I   +
Sbjct: 356 KQGEHANQRIAVLGEMMELGETSAQLHQEVGE----MVVATQVDLLITLGEGAKEIAVPL 411

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 F   G+  EA++   E +   DV+ + G
Sbjct: 412 TEKTTHF-HAGSVAEAVKLLEEKVVAGDVVFLKG 444


>gi|306822449|ref|ZP_07455827.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553994|gb|EFM41903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 515

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 194/504 (38%), Gaps = 44/504 (8%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVS 74
           L+   +   +     ++ D+R ++ G + V        G     F+     +G  A V  
Sbjct: 29  LNADGIDNADVPFTHITYDTRTVREGTLLVC------KGRFRPEFLDGLKERGLVAYVSE 82

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---AS 131
             +S         +  P L+V++ RK LSL ++  YG  P+N L V G +G       A 
Sbjct: 83  RDFSD-------HTEVPGLIVNDARKALSLLSAAFYG-MPQNELTVIGITGTKGKTTTAY 134

Query: 132 FVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           F Q I         + F              ++LTTP  +   + +   +  G+ ++ +E
Sbjct: 135 FTQAILNAYSNGRCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLVME 194

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAII 246
            SS     +R+ G+    G+F N+  DHI    H T + Y   K     +L       ++
Sbjct: 195 VSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYLYCK----RQLAYHARAFVL 250

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDF-D 301
            AD  ++  + + A  AG  +     +         L    +       +I+  G D  +
Sbjct: 251 NADADHADLIREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSAFSIAANGHDLGE 310

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   L G+F   NAL A  L    G+       H  +   VPGR E            VD
Sbjct: 311 FSLSLAGDFNYANALAAVALAHEAGVPFDSAAMHAMESVHVPGRMELFTGTDGDTVAIVD 370

Query: 362 YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YAH   S+  ++  +         RI +V G  G++   +R  + + A D     + T +
Sbjct: 371 YAHNYTSVRALIDFVEQRYCERKPRITLVAGSAGNKAFDRRQEIVEAAQDRIARFVFTAE 430

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKGHET 471
           +  +E    I  E++  +           +R++AI +A+E  +     DV+++ GKGHE 
Sbjct: 431 DTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGLDVILIIGKGHER 490

Query: 472 VHIVTNGEKKMSVDCDIIREILGL 495
                N       D  ++  +L +
Sbjct: 491 WIKDLNSHVAYEGDDCVVERLLNV 514


>gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 448

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 151/408 (37%), Gaps = 29/408 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     + I +      +        V++DSR   +G +FVA+ G++ DGH +I  A++
Sbjct: 1   MIGDWLTDDIAKAVGGAAEGDSVAFTRVTTDSRADCSGALFVALKGDRFDGHEYIDAAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A++           A   ++   ++V ++   L    +    +    + AVTG++G
Sbjct: 61  QGAVAVMAQ---------AKANADVAQIIVPDSLAGLGRLGALNRSRFNGPVAAVTGSAG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I  + G          T  +F     +           L           
Sbjct: 112 KTTVKELLASILSQRGDVC------KTQGNFNNHIGVP-------LSLLQLTEEHRSAVF 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + AS+ G   + +   +       N    H++      +   AK  +   L P++  A+
Sbjct: 159 ELGASAVGEIAYTVALARPQVAILNNAAAVHVEGFGDLASIVKAKGEIVCGL-PEDGVAV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  DDA     ++ A     +V+S G     +   + +    N     +S      D   
Sbjct: 218 LNKDDANFSAWVEMAGAR--KVISFGLDDSAMVRAQNIHLELNGSTFRLSAPEGGIDATL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
           PLPG   V NAL AA   +A+G     V + L     V GR   +     G  I  D Y 
Sbjct: 276 PLPGAHNVRNALAAAAAALALGWTLEEVRDGLASAAPVKGRMNKL-LGINGSVILDDTYN 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +  S++  +  +     GR IV  G  G+          ++A    D
Sbjct: 335 ASPTSMKAAIDVLARY-PGRRIVALGHMGELGSVAEDAHREVAQYARD 381


>gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
 gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
          Length = 453

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 159/414 (38%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRELE------ 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 73  ---ADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +  G   + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDGYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L  + + AI+  D    +       +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGL-REGAVAIVSLDSNGGEHWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTLIGEVDVELGIIGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  + + ++ R
Sbjct: 296 EMGASLAEIRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKDAKVISDLCQG 404


>gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
 gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
          Length = 479

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 167/474 (35%), Gaps = 70/474 (14%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-----LQDFSATI 86
            V  D+R +  G +F+A+ G + DGH F  +A+  GA  ++ +         +       
Sbjct: 4   SVEFDTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAAREVDAPAIVVPPLPPGQ 63

Query: 87  RSNTPILVVDNT---------------RKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
            ++  + +  +T               R  +   A+         ++ VTG+SGK+S   
Sbjct: 64  ANSGSVALTGDTDGSGAAVLAALAKLARHVVDRLAAGGL-----TVIGVTGSSGKTSTKD 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + Q+ +  G +    G  ++             S  +L      +S++GV H++  A +
Sbjct: 119 VIAQLIEPMGPTVAPPGSFNSELGHPWTALRADASTKFLVL---EMSARGVGHIAAAAET 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G+  N+G  H+    +++    AK  L E L P++  A++  DD 
Sbjct: 176 ----------TPPRIGAVLNVGSAHVGEFGSREGIAKAKGELVEAL-PEDGLAVLNLDDP 224

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               V   A     R++ VG                  +    +     +     PL GE
Sbjct: 225 L---VAAMASRTKARIVGVGESAGAQIRAADITVDAEARPSFRLITPEGEAPVTLPLHGE 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AA +   +G  +  + + L  L     R   V T + G  I  D Y     S
Sbjct: 282 HHVGNALSAAAIARELGATTEEIAQRLSSLQRRSERRMEVTTRADGVTILNDSYNANPES 341

Query: 369 LEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPR 421
           +   LK + ++  +  R   V G  G+  +        I      L++  + +V  +   
Sbjct: 342 VRAGLKALASMSRSGRRAWAVLGVMGELGEDSVNAHDSIGRLVVRLNIEKLVVVGQE--- 398

Query: 422 SEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGK 467
                   A +  G           +   +   A+    + L   DV++V A K
Sbjct: 399 -------AAAMHQGAFQEGSWGEESVLVPDVEAAVAVLHDQLRPGDVVLVKASK 445


>gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
 gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
          Length = 449

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 167/447 (37%), Gaps = 45/447 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G  +  +  +K      T
Sbjct: 135 NNKLGMLINLASMADDTEYAIFEL-------------GMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLS 269
           N+   H+++  + +    AK  +F     K   A+I AD     +++    N +   + S
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFANF-SKNDIAVINADTNCYNKILSILKNLSITDIHS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   K    + +   +  +QV +   +  K  D   P        N      +   +G 
Sbjct: 241 FGRSAK-TSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGK 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  +   HL  +    GR E +  N +  R+  D Y  +  S++  L+ ++ + +     
Sbjct: 300 DIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTA 357

Query: 387 VFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSED---PEKIRAEIIHGIPGF 439
           + G   +  +  + +  K+   + D       +   N +  +   P KI          +
Sbjct: 358 IIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPAKIA-------KKY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +  E I    ++    +++++ G
Sbjct: 411 FKNVD--ELITHITDLFEGNELILIKG 435


>gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 461

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/488 (18%), Positives = 171/488 (35%), Gaps = 71/488 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +          +  +N++  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLT------LHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A     A           S  P ++V+N        A     K   +++
Sbjct: 54  FIDLAFENGAVATFSERAI----------SGRPYILVENCLAAFQKLAQYYIDKLRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK+S    ++ +  ++           T  ++  D        I L   + ++ 
Sbjct: 104 AVTGSNGKTSTKDMIEAVLAKA------YKTYKTQGNYNND--------IGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D   L  I +      T +G  H+ Y  +++     KM++ +  
Sbjct: 150 EDTEKIVLEMGQDHMGDIQLLSRIARPHIALLTLIGEAHLAYFGSREKIAEGKMQIVDG- 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      I   D      ++         V+  G       L        K  +T     
Sbjct: 209 MDSNGILIAPGDP-----ILDPYLPDSQMVIRFG---DHQELVVEDIKECKDSLTFRTNV 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PL G++   NA++AA +   + +    ++E LE + +   R E+V   +    
Sbjct: 261 LPRPVTLPLTGKYNATNAMIAAYVGKLLAVPDEDIIEALETVKLTRHRTEWVKAANGADL 320

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +   Y     ++ +IL+    I    +G+ I V     +       +  ++         
Sbjct: 321 LADVYNANPTAMRLILETFAAIPANPNGKKIAVLADMKELGADSVALHSQL--------- 371

Query: 415 VTDDNPR--------SEDPEKIR----AEIIHGIPGFIEKGNRIEA----IRTAIEMLNK 458
           +T  +P+         +D + +      +   G   F +K NR +      +  + +L  
Sbjct: 372 ITSLDPKRIDQLVFYGDDIQALAKLASQDYPSGRVSFFKKNNREDQYEDMCQYLLTILEP 431

Query: 459 QDVLVVAG 466
            D +++ G
Sbjct: 432 NDQMLLKG 439


>gi|307566043|ref|ZP_07628501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
 gi|307345231|gb|EFN90610.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
          Length = 441

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 157/445 (35%), Gaps = 43/445 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF+A+ G   +G+ F   A+  G    +V  +   +        N  I
Sbjct: 16  VTTDSRNCPKGSIFIALKGASFNGNAFAKTALENGCSYAIVDESKYAE------PDNERI 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +        A          ++ +TGT+GK++    +  +         +     T
Sbjct: 70  ILVSDALIAYKELAREHRRSMNIPVIGITGTNGKTTSKELISAVLAE------KYKVHHT 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTN 211
           + ++  D          + + L  ++++    V    +SH  D +  +  ++   G  TN
Sbjct: 124 LGNYNNDV--------GVPRTLLEMTTKDEIAVIEMGASHPTDIKKLVTYVEPTCGLITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H++   + +     K  L++ L    +   +   +    E+         R+++ G
Sbjct: 176 VGRAHLEGFGSFEGVKKTKGELYDYLKAHNALLFLNESNPDLVEMA--TERNFDRIITYG 233

Query: 272 YQGKFIHLKKVCAIHNKQQV---------TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    +V +     +          T  V    ++    L G + + N L A  + 
Sbjct: 234 QDDTADVKGEVISCCPFLKFSWQAALSLGTEQVFSAIYEVQTNLIGAYNLDNMLAAVTIG 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +  G++   +   LE       R + + T      I   Y    +S++  ++N R +   
Sbjct: 294 LHFGVEPHKICHALESYTPTNNRSQLIKTKDNN-LIVDAYNANPSSMKAAIENFRLMEVK 352

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             + + G   +          +I   +        D  + E+   +          F + 
Sbjct: 353 NKMAILGDMHELGDATAEEHQRIVDQI--------DASKIENVWLVGENFAKTNCHFRKF 404

Query: 443 GNRIEAIRTAIEMLNK-QDVLVVAG 466
            N  E ++ AI +    +  +++ G
Sbjct: 405 ANVEE-VKAAIALKKPTEHYILIKG 428


>gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa]
          Length = 458

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 144/391 (36%), Gaps = 24/391 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I  G +F+A+ G + DGH ++ +  A+GA A +V    +      
Sbjct: 20  GEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVEREVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +  P L+V +TR  L    +    K    + A+TG+SGK++V   +  I +      
Sbjct: 74  --DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTAVKEMLASILRTQA--- 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   ++ +   +       P+ L   L          + + AS  G   + ++  + 
Sbjct: 129 ---GDAESVLATRGNLNNDLGVPLTL---LQLAPQHRSAVIELGASRIGEIAYTVELTRP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H+      +    AK  + E L   +  A++  DD        RA    
Sbjct: 183 HVAIITNAGTAHVGEFGGPEKIVEAKGEILEGL-AADGTAVLNLDDKAFDTWKARASGRP 241

Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+   Q  F                +     +      L G   V NAL AA    
Sbjct: 242 LLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAH 301

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A+G+    ++  L+ L  V GR     T S G R+  D Y     S+   +  +   +  
Sbjct: 302 ALGVPLDGIVAGLQALQPVKGRAVAQLTAS-GLRVIDDSYNANPASMLAAIDILSGFSGR 360

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLA 410
            ++V+   G      +Q  R +    A  ++
Sbjct: 361 TVLVLGDMGELGSWAEQAHREVGAYAAGKVS 391


>gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316]
 gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
 gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
          Length = 455

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 156/423 (36%), Gaps = 48/423 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 54  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G                 + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQG--------------NYNNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +      H  D H L  I K      T +G  H+++  +++     KM++ +  
Sbjct: 150 EDTEKIILEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLEFFGSREKIAEGKMQITDG- 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  +   I   D      ++     A    +  G+      L+       K  +T     
Sbjct: 209 MSSDGILIAPGDP-----IIDPYLPANQMTIRFGH---DQELQVTELKEEKHSLTFKTNA 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  
Sbjct: 261 LEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++ +IL+    I     G+ I +     +  +    +  ++ + +   +
Sbjct: 320 ILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDS 379

Query: 414 IVT 416
           I T
Sbjct: 380 IDT 382


>gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
          Length = 481

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 161/462 (34%), Gaps = 54/462 (11%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR   +G +FVAI G + DGH F+ +   QGA A +V    +         +  P +V
Sbjct: 32  TDSRQAGSGAVFVAIKGERVDGHGFVDKVADQGAAAAIVDHEVAC--------TTMPQIV 83

Query: 95  VDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           V++T   L L A     +  +     +++ +TG+ GK++    +  +    G +   IG 
Sbjct: 84  VEDTVAALGLLAKHNIDRRRQLPGAFDLIGLTGSVGKTTTKDLLSALLSTLGPTVAPIGS 143

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                 +                 + A+  G                
Sbjct: 144 FNNEIGLPLTALRVNADTRFFVAE-------------MGANHIGEIARLTRIAPPNTVIV 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
             +G  H+    +++    AK  + + LLP    A++ ADD Y   V+  A  A   VL 
Sbjct: 191 LRVGVAHLGEFGSRERIAQAKSEIVQGLLP-GGTAVLNADDDY---VVPMAQFASGDVLW 246

Query: 270 VGY----QGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G       +           +  + T++   G+       +PG   V NAL AA + + 
Sbjct: 247 FGQGHTRDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNVMNALAAATVALR 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNSLEMILKNIRTIT 380
            G+    + + L   H +      + T SR G     I   +    +S++  L  +R   
Sbjct: 307 YGMPLTAIAQTLAAQHTISPHRMALSTVSRQGASFELIDDSFNANPDSMKAGLDGLRAWN 366

Query: 381 SG-----RIIVVFGCGGDRDQGKRPIMGKIALDLADI---AIVTDDNPRSEDPEKIRAEI 432
           +        + + G   +    +R +   +    A +   AI+T  +P       +   +
Sbjct: 367 ANDGRQPFRVALLGAMLELGADERELHASVGEYAAGLGLDAIITVGSPSDAHLNVLAESL 426

Query: 433 IHG-----IPGFIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKG 468
             G                EA R   ++     D +V+  KG
Sbjct: 427 AEGATRGRAASVDCVQTIDEAERIVFDLAKNHTDTVVLL-KG 467


>gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
 gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
          Length = 426

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 154/443 (34%), Gaps = 49/443 (11%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            +S+ ++ G +FVA+ G K DGH FI +A+  GA AI+        D          I +
Sbjct: 11  LNSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAERKTVDSDR---------IFL 61

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V+++   L+  A    G     ++ VTG+SGK++    +  + +         G  +T  
Sbjct: 62  VESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNT-- 119

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                              L+    + +  + + AS  G   H             N+G 
Sbjct: 120 -----------EYGLPLSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGS 168

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+++  T++     KM + +      +   ++ D    +EV         + L  G +G
Sbjct: 169 AHLEFFGTRERIMETKMEIIKHSKENATAVTLFDDPDLRREV-----PCYRKTLFFGKEG 223

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVL 333
               LK                   F           Q+ N   +  +  A+G    +  
Sbjct: 224 GDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSGYWNGGQLLNIAASLCVMRALGETVDIFD 283

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
             L  L  VPGRF       +G  I  D Y  +  + +  ++ +      R  VV     
Sbjct: 284 --LASLKTVPGRFN--VREKKGVLIVDDTYNASPEAFQTSIEALLRFPGRRFAVVGAMKE 339

Query: 393 --DRDQGKRPIMGKIALDLADIAIVTDD-----------NPRSEDPEKIRAEIIHGIPG- 438
             +R +     +G+    L  + I   +             +S+DPEKI  ++   +   
Sbjct: 340 LGERSKEFHEELGERLNVLDGVYIFLSEPEAEWIKSKKIILKSDDPEKIAKDLASRVTEG 399

Query: 439 --FIEKGNRIEAIRTAIEMLNKQ 459
              + K +R   I   +EM  K+
Sbjct: 400 DVVLFKASRAVRIEKVLEMFEKE 422


>gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 456

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 97/466 (20%), Positives = 161/466 (34%), Gaps = 47/466 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL+  L    +   +   + VS+DSR I  G +FVA+ G + DGH ++ Q   +GA  
Sbjct: 7   FSELVIHLDARLVGG-DCSFHGVSTDSRGIAPGQLFVALTGPRFDGHEYLEQVAGKGAVG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSV 129
            +V              ++ P LVV +TRK L+   +        + + A+TG+SGK++V
Sbjct: 66  ALVEHEVEG--------ASLPQLVVLDTRKALAQLGAMNRNAFVDKPVAAMTGSSGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G          T+ +   +       P+ L   L          + + A
Sbjct: 118 KEMLASILRTRG----------TVLATRGNLNNELGVPLTL---LELAPEHDAAVIELGA 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G     +   K      TN G  H+           AK  + E L      A++  D
Sbjct: 165 SRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDRIVEAKGEILEGL-DATGTAVLNLD 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D        RA        ++      +H   +           ++           L G
Sbjct: 224 DKAFPIWQLRAGERKVMTFALNNPAADLHATDLRRDARGCPAFMLNSPLGAAPVQLNLLG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA    A+G+    +   L  +  V GR       S G R+  D Y     
Sbjct: 284 THNVANALAAAAAACALGVSLEGIAAGLNNVQPVKGRA-VAQIASNGVRVIDDTYNANPA 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +  +   +   ++V+   G   D   QG R +    A  ++ +  V         
Sbjct: 343 SINAAVDILTGFSGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAVGP------- 395

Query: 425 PEKIRAEIIHGIPGFIEKGN----RIEAIRTAIEMLNKQDVLVVAG 466
                  + H +  F E  +    + E I       N    L++ G
Sbjct: 396 ------LMTHAVSAFGEHAHHFASQEELIAALGAEQNPDTTLLIKG 435


>gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
 gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 464

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 103/492 (20%), Positives = 190/492 (38%), Gaps = 78/492 (15%)

Query: 1   MKLQ-DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL   ++ K F  L           +E  I  V  DSR + AG +F AI     +G+ +
Sbjct: 39  MKLLCQILQKRFSHL-----------KELSIQNVVMDSRKVVAGSLFFAIQ----NGNRY 83

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+ +GA  ++    +   +          ++ V +T  F+   A+         ++A
Sbjct: 84  VSEALEKGASIVIADHYFEPHER---------VISVKDTVLFMQELAAEYRSFLKTKLIA 134

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +TG++GK++    V  I        +  G  +  IG   TI +  + +            
Sbjct: 135 ITGSNGKTTTKDIVYAILSKTFPTKKTLGNYNNHIGLPFTILNLEEGDEF---------- 184

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + +  SS G         +   G  TN+G  H+++ +T++  F AK  
Sbjct: 185 ----------AVLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTE 234

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L   +   I   DD + K+V           + VGY+    + + V     ++  +
Sbjct: 235 LLPYL--PQGHFITSGDDIFLKKVSG---------VHVGYEEGNDY-RIVSYRKKERMTS 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             V GKD++    L G+  V NA +   L   IG+    +  +L ++ + P RFE     
Sbjct: 283 FQVRGKDYE--ICLEGKHNVMNAAMGIALAEMIGMKPEEIQRNLSQIELSPMRFERF--E 338

Query: 353 SRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
            RG     D Y  +  S+   L ++  + + R   V G     G+R+      + + A+ 
Sbjct: 339 YRGTEYINDAYNASPISMFAALDSLEEMKAERKFAVLGDMLELGEREIEFHKEVIQKAMS 398

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               A++           K+    +    G     +  EAIR  +   +++ VL+ A +G
Sbjct: 399 CHLQAVLL-----YGTRMKLALHELPFHEGLYHFES-KEAIREYLRKFSEKTVLIKASRG 452

Query: 469 HETVHIVTNGEK 480
            +   I+   EK
Sbjct: 453 MKLEDIIEGEEK 464


>gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
 gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
          Length = 455

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 156/423 (36%), Gaps = 48/423 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 54  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G                 + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQG--------------NYNNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  I K      T +G  H+++  +++     KM++ +  
Sbjct: 150 EDTEKIVLEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLEFFGSREKIAEGKMQITDG- 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  +   I   D      ++     A    +  G+      L+       K  +T     
Sbjct: 209 MSSDGILIAPGDP-----IIDPYLPANQMTIRFGH---DQELQVTELKEEKHSLTFKTNA 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  
Sbjct: 261 LEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++ +IL+    I     G+ I +     +  +    +  ++ + +   +
Sbjct: 320 ILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDS 379

Query: 414 IVT 416
           I T
Sbjct: 380 IDT 382


>gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
 gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
          Length = 449

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 166/447 (37%), Gaps = 45/447 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G  +  +  +K      T
Sbjct: 135 NNKLGMFINLASMADDTEYAIFEL-------------GMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLS 269
           N+   H+++  + +    AK  +F     K   A+I AD     +++      +   + S
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFANF-SKNDIAVINADTNCYNKILSILKKLSITDIHS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   K    + +   +  +QV +   +  K  D   P        N      +   +G 
Sbjct: 241 FGRSAK-TSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGK 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  +   HL  +    GR E +  N +  R+  D Y  +  S++  L+ ++ + +     
Sbjct: 300 DIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTA 357

Query: 387 VFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSED---PEKIRAEIIHGIPGF 439
           + G   +  +  + +  K+   + D       +   N +  +   P KI          +
Sbjct: 358 IIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIA-------KKY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +  E I    ++    +++++ G
Sbjct: 411 FKNVD--ELITHITDLFEGNELILIKG 435


>gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 457

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 165/442 (37%), Gaps = 37/442 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSRH+    +F A+ G K DG+LF P+A ++ A A+VVS      D S        
Sbjct: 29  GVCTDSRHLPPHAVFFALGGEKFDGNLFAPEA-SRTAAAVVVSRVEEGMDPS------CA 81

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +++V++T + L   AS    +    ++ +TG++GK+S       +  +   +    G  +
Sbjct: 82  VILVEDTLEALQKLASWWRSELTLTVIGLTGSNGKTSTKDLTASVLSQGFRTIATQGNLN 141

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                                 L    S       +  +  G      +  +   G  T+
Sbjct: 142 NHIGVP-------------LSILRATPSDEAAVWEMGMNHSGELAPLCEMTRPKIGIITS 188

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++Y  +++     K  L    LP++   I  AD  Y+  + +    A       G
Sbjct: 189 IGTSHMEYLGSRENIAREKCTL-ARCLPEDGFMIFPADCDYADMIRQSTRAACIDC---G 244

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                +  +   +  N  +  +S+      +   P+ G   V NAL+AA    A G+   
Sbjct: 245 IGAGTVRAENPVSTENGTRFILSIPDFCREEVELPVHGRHMVTNALLAAAAGWAAGLAKE 304

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVF 388
            +   L +  +  GR     T   G  +  D Y    +S++  L  +  +  +GR   V 
Sbjct: 305 QIASGLNQARLTGGRLHC--TRINGILVVDDTYNANPDSMQAALHTVAGLSCTGRRFAVL 362

Query: 389 GCGGDRD---QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGN 444
           G  G+     +    ++G+ A +L    +V        D  +I   I  +     +  G+
Sbjct: 363 GRMGELGAFSEEGHVLVGRTAEELRLDCVV----SVGTDAARITDAISPNAFTQSLHFGS 418

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             EA           D+++  G
Sbjct: 419 AEEAAEWLRSHTAPGDIVLFKG 440


>gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
 gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
          Length = 454

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 154/417 (36%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR IQ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLGLPMPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +A GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 55  EDVLAAGATAVVVSREDCAALKGA--------LKVDDTLAALQKLAKAWRENVNPFVFGI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  + +            +T  +F           I L   L  L+ +
Sbjct: 107 TGSSGKTTVKEMLAGVLR---HRFGDEAVLATAGNFNNH--------IGLPLTLLKLNEK 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
               V     +H  +   L  I         N  R H+            AK  ++E LL
Sbjct: 156 HRYAVIEMGMNHFGELSLLTRIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLL 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA        A      + + G     +H + +          +    +
Sbjct: 216 -SDGVALIPCEDANIATF--EAATVQLNIQTFGIASGDVHAENIELKPLSCTFDLVRGNE 272

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + P+PG   V+NA+ AA L +A G+  A V + L+    + GR   +    +G  +
Sbjct: 273 RVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFSNIKGRLN-IKQGIKGATL 331

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 332 IDDTYNANPDSMKAAIDVLAAMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDKGI 388


>gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
 gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
          Length = 452

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 149/375 (39%), Gaps = 31/375 (8%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           KD  +++N   I  +    ++I  ++ DSR ++ G +F+  +G   DGH +I  A  +GA
Sbjct: 6   KDLEKILNAKKINLVD--NKEITGIAIDSRKVKEGDLFIPFLGENVDGHDYIESAFEKGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A     + SL+D      S+  I+ V+++ + +   A          I+A+TG++GK++
Sbjct: 64  VA-----SLSLKD---DFVSDNNIIYVNDSYEAIQGLAKHYLEYLNVKIVAITGSNGKTT 115

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V  I +       +     T  +F  +  +           L+      +  + + 
Sbjct: 116 TKDIVTSILET------KFKVHKTQGNFNNELGVP-------LTILAAPEDSDILVLEMG 162

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A + G        +K      TN+G  HI++  ++     AK  +    + K+   +   
Sbjct: 163 ADNFGQLDFLSKLVKPDYTIITNIGESHIEFFGSRAGIAKAKFEI-TNGMKKDGFFVYNG 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           D+   KE+++   N+     S G      I L+      +K    +S++  +F       
Sbjct: 222 DEPLLKELVE---NSSINATSCGENSYNDIILENYTITRDKIDFKLSIDKNNFSTTLK-- 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           G+  ++N + A  +   IG+ +  +   ++ +  +   R E +        I   Y  + 
Sbjct: 277 GKHNLFNIMFAVAIAKKIGLTNEEIRHAIDNISKITNMRLESITYGEDSLIINDAYNASP 336

Query: 367 NSLEMILKNIRTITS 381
            S++  +  I  +  
Sbjct: 337 TSMKAAVDVISDLND 351


>gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 504

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 172/494 (34%), Gaps = 52/494 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + +L      E++        Q  +  +   V  DSR + AG +F+A+ G + DGH +  
Sbjct: 1   MIELTLGQIVEIVGGELAGGAQ-PDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYAT 59

Query: 62  QAIAQGAEAIVVSSAYSLQ---DFSATIRSNTPILVVDNTR-------KFLSLFASRL-- 109
            AI QGA A++ +    +        T   +   +   +         + LS  A  +  
Sbjct: 60  TAIGQGAVAVLAARPVDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVD 119

Query: 110 --YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
              G H   ++A+TG++GK+S   F+  +   +G +    G  +            T   
Sbjct: 120 LAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCTTHT 179

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
            YL    + +S++G+ H            H         G+  N+G  H+    ++    
Sbjct: 180 RYLV---AEMSARGIGH----------IAHLARITPPRIGAVLNVGSAHLGEFGSRANIA 226

Query: 228 NAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHL 279
            AK  L E L        A++ ADD +   V   A     RV++           ++   
Sbjct: 227 QAKGELVEALPAAADGGVAVLNADDPF---VAAMAPRTTARVVTFSTANPPAPGAQYWAG 283

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   +   T+      +     + GE QV NAL AA + I  G+D   V+  L   
Sbjct: 284 DLELDDVARASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSH 343

Query: 340 HVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGC---- 390
                    V T   G  +  D Y    +S+   +  +    S R       V G     
Sbjct: 344 AAASAHRMDVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGEL 403

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G +  Q  R +  ++A    +  I   DNP   +   +R +            +   A+ 
Sbjct: 404 GDEAVQEHRALGAELAKYHVERLIAVGDNP---NCRALREQAAALGVRTDAVPDAASAVD 460

Query: 451 TAIEMLNKQDVLVV 464
                +   DV++V
Sbjct: 461 LLRHQVRDGDVVLV 474


>gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Azorhizobium caulinodans ORS 571]
 gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium
           caulinodans ORS 571]
          Length = 476

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 84/404 (20%), Positives = 139/404 (34%), Gaps = 28/404 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           PE I   +    +     +  +S D+R ++ G  F AI G   DGH ++ +A+  GA   
Sbjct: 9   PEEILAATGGTARGTLADVTGISIDTRTLEPGDAFFAITGENSDGHAYVAKALENGASLA 68

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV++             + P++VV +    L+        +    I+AVTG+ GK++   
Sbjct: 69  VVAADR------VQGLPDGPLVVVPDVLGALTDLGKAARARSEARIVAVTGSVGKTTTKE 122

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++      G +       +              S  Y                 V  + 
Sbjct: 123 ALRIALSADGETHASAASYNNHWGVPLSLARFPRSARY-------------GVFEVGMNH 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G     +  ++      T +   HI      +   +AK  +F+ L P    A++  D+ 
Sbjct: 170 PGEITPLVRMVRPHVAVITTVEAVHIAQFSGIEEIADAKAEIFDGLEP-GGTAVLNRDNP 228

Query: 252 YSKEVMKRAHNAGCR-VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               ++  A   G + ++S G      + LK V        V   V G    F   +PG 
Sbjct: 229 LFDRLVASARAKGVKNIVSFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGR 288

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVD--YAHTS 366
             V NAL        +G D AL    L +L   PGR   V  +  GG    +D  Y    
Sbjct: 289 HIVQNALAVLAAVRLLGGDLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANP 348

Query: 367 NSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            S+     +L        GR I V G   +          ++A 
Sbjct: 349 ASMRAAIDVLSRTPVGPRGRRIAVLGDMLELGTEGAQHHRELAE 392


>gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 93/468 (19%), Positives = 159/468 (33%), Gaps = 41/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F EL   LS   +   +   + VS DSR+I+ G +FVA+ G + DGH ++    A
Sbjct: 2   LKAMTFNELAQALSARVLS-SDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLNDVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA   +V    +         S  P L+V +TR  L    +         + A+TG+SG
Sbjct: 61  KGAVGALVQREVA--------DSALPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  + +  G      G          +      +P+ L   L          +
Sbjct: 113 KTTVKELLAGVLRTRGPVLATRG----------NLNNDFGAPLTL---LELAPEHTAAVI 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + AS  G   + +   K       N G  H+      +    AK  + E L      A+
Sbjct: 160 ELGASRIGEIAYTVALTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGL-DASGTAV 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           +  DD   +    RA        +V       H   +          T+           
Sbjct: 219 LNLDDKAFETWRVRAAGRKVLTFAVLNAAADFHASNITVDARGCPSFTLHSPQGSEHVQL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
            L G   V NAL AA    A+G+    +   L  +  V GR       + G R+  D Y 
Sbjct: 279 NLLGNHNVANALAAAAAAYALGVSLFGIATGLGAVQPVKGR-TVAQLATNGMRVIDDTYN 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              +S+   +  ++   + +++V+       D  +     +G  A    D       N  
Sbjct: 338 ANQSSVCAAIDLLKGFDTRKVLVLGDIAELGDWAEQSHREVGAYASGKVDALYAVGPN-- 395

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAG 466
                 +   +    PG      + E I+       + D    +++ G
Sbjct: 396 ------MAHAVNAFGPGARHFATQAELIQAL--TAAEHDTHTTILIKG 435


>gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
 gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
          Length = 456

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 95/465 (20%), Positives = 159/465 (34%), Gaps = 35/465 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F EL   LS   +   + + + VS DSR I+ G +FVA+ G + DGH ++    A
Sbjct: 2   LKAMTFSELSQALSARVLS-SDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLNDVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA   +V              S  P L+V +TR  L    +       + + AVTG+SG
Sbjct: 61  KGAVGALVQCEVP--------ESTLPQLLVADTRLALGQLGALNRAAFDKPVAAVTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  + +  G      G          +      +P+ L   L          +
Sbjct: 113 KTTVKELLAGVLRTRGPVLATRG----------NLNNDFGAPLTL---LELAPEHTAAVI 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + AS  G   + +   K       N G  H+      +    AK  + E L      A+
Sbjct: 160 ELGASRVGEIAYTVALTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGL-DASGTAV 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           +  DD   +    RA        +V       H   +          T+           
Sbjct: 219 LNLDDKAFETWRARAAGRKVLTFAVLNAAADFHASDITVDARGCPSFTLHTPQGREPVQL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
            L G   V NAL AA    A+G+    +   L  +  V GR       + G R+  D Y 
Sbjct: 279 NLLGNHNVANALAAAAAAHALGVSLFGIATGLGAVQPVKGR-TVAQLATNGMRVIDDTYN 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVTDDNPR 421
              +S+   +  ++     +++V+   G   +  +     +G  A    D       N  
Sbjct: 338 ANPSSINAAVDLLKGFDGRKVLVLGDIGELGEWAEQGHREVGAYAAGKVDALYAVGPNMA 397

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                        G   F  +   I+A+  A    +K   +++ G
Sbjct: 398 YA-----VNAFGPGAQHFATQVELIQALTAA--EHDKHTTILIKG 435


>gi|303232214|ref|ZP_07318915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Atopobium vaginae PB189-T1-4]
 gi|302481692|gb|EFL44751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Atopobium vaginae PB189-T1-4]
          Length = 652

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 118/523 (22%), Positives = 192/523 (36%), Gaps = 60/523 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I  +  +S+      IF A  G        + QA+AQGA   +  +  + +   A   
Sbjct: 92  TPITGIDCNSQVAAPQHIF-ACKGAAFKAAY-LAQALAQGACCYMCEANKARELADAC-- 147

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA---SFVQQICQRS---- 140
                LVV + R  +++ +   +G+ P+  L   G +G    +     ++ I +      
Sbjct: 148 PGATQLVVTDIRHAMAVCSPIAWGR-PDKQLCCIGVTGTKGKSTTTYMLRSILEAHCAAR 206

Query: 141 -------GLSSFQIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSH 192
                        IG  ST   F  +    T P    L + L   ++  + ++ +E SS 
Sbjct: 207 GITSTHGASPVGIIGSISTYDGFINEKSTNTTPEAPDLWRHLHNAAAAKLAYMVLEISSQ 266

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLP----------- 239
            L   R+ G+ L A +F N+ RDHI    H T + YF +K+ +F                
Sbjct: 267 ALKYERVYGLHLYASAFLNISRDHISPVEHPTFEDYFASKLTIFSYAKHSVVNLNSKHAA 326

Query: 240 --------KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----------GKFIHLK 280
                            D   +      A     R  S                ++   +
Sbjct: 327 RIANTACSCSDTHFCMVDVPKNDASADSAQADDARADSAQADEFTREELKALLNQYPCTR 386

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                  +    + V G       P+ G F   NALVA  L   +G+    +++ +    
Sbjct: 387 ATDVTCARGGFAMRVSGMAQPVYIPMHGSFNAQNALVALTLARLVGVGDDAIVKGIAH-T 445

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKR 399
            VPGR EF+ T        VDYAH   S +    +  R   S RI  VFGC G++   +R
Sbjct: 446 RVPGRMEFIPTTHPRIHGIVDYAHNRLSFQTFFASIRREFPSARIYAVFGCPGNKAFERR 505

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAI--- 453
             + +IA   AD  I+T D+P SED   I  E+   +P    +  + NR +AI  A+   
Sbjct: 506 RDLPEIAGAYADEIILTKDDPGSEDTRTICEEMASHLPAHARYCIEPNRAQAIFDAVTDA 565

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
                  V+ + GKGHE      +G      D  +  + +  +
Sbjct: 566 HRAQVDSVICMLGKGHENTQHEAHGYSSYPSDARVYADAIAAV 608


>gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
 gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
          Length = 449

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 172/448 (38%), Gaps = 35/448 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +I+ VS+DSRHI    +FVA++G + D H FIP    QGA A++VS          
Sbjct: 16  GADCQISSVSTDSRHIDEQGLFVALIGERFDAHDFIPAVQEQGATALLVSKE-------- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + +  P ++V +T+K L L A  ++        A+TG+ GK++V   +  I  RSG   
Sbjct: 68  -VDTTLPQVIVSDTQKALGLIAKHVHQVCHTFTFALTGSCGKTTVKEMLASILTRSGEVL 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +           + PS  +    L      G  H +  + +  L Q        
Sbjct: 127 ATAGNFNNEIGVPLTLLRSQPSNDFAVIEL------GANHQNEISYTTQLAQ-------P 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   + +    AK  +FE L  +   AI   D     +         
Sbjct: 174 NVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGL-KENGIAIYNLDSNGLPKWSSLFEGKQ 232

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               ++       +   +      +    ++           + G+  V NA+ AA L I
Sbjct: 233 VVSFAMNDSCADFYASNIEVNAIGEPSFQLNTPKGSIQVSLGIIGKHNVANAVAAAALAI 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
                   + + L++L  V GR   V T + G ++  D Y  +  +++  ++ +      
Sbjct: 293 QANSSLNDIQQGLQELGSVKGRVA-VETLASGLKVIDDTYNASVPAMKAAVELLGGFKGQ 351

Query: 383 RIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           R +V+       ++       +G+ A       +VT       D  K+ +E+ +G   F 
Sbjct: 352 RWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVT-----FGDDTKVISELCNG-RHFE 405

Query: 441 EKGNRIEAIRTAIEMLNKQDV-LVVAGK 467
            + +    +   ++++   +V ++V G 
Sbjct: 406 TRSDLNAYLLKELQLIKHNEVTVLVKGA 433


>gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
          Length = 450

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 164/446 (36%), Gaps = 45/446 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NE+  +S+ I+ G +F+A+ GNK DGH +I  AI QGA A++VS    + D         
Sbjct: 23  NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIAD-------KN 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  K L   A           +A+TG+ GK+S    ++ + Q   L+    G  
Sbjct: 75  KIILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         +    L               +  G  +  +  +K      T
Sbjct: 135 NNHLGLLINLASMPDDTEFAIFEL-------------GMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    AK  +FE    K+  A+I +D      ++           ++
Sbjct: 182 NISEAHLEFFNSLEDIAEAKCEIFESF-DKDGIAVINSDSNCYDRILSILKKLSIE--NI 238

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              GK    + +    + +QV +  +  D   +   P   +    N      +   +  D
Sbjct: 239 HNFGKSSSAELILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQD 298

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
                 +L+ + +  GR + +   +   RI  D Y  +  S++  L+ ++ + +     +
Sbjct: 299 LNKAAGYLKNIPMTKGRGKIINIGN--SRIICDYYNASPTSMKAALEYLKQMPATNKTAI 356

Query: 388 ----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS---EDPEKIRAEIIHGIPGFI 440
                  G + ++  + ++  I         +   N +      PEKI       I   I
Sbjct: 357 IGEMLELGQNSERLHKELVPYILDSGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELI 416

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N         ++    +++++ G
Sbjct: 417 ASTN---------DLFKNDELILIKG 433


>gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 467

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 98/451 (21%), Positives = 168/451 (37%), Gaps = 47/451 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +Q G +FVA+   + DGH F   A+ +GA A++VS+  +            
Sbjct: 27  SGVSIDTRTLQPGDLFVALT-AQRDGHDFAQAALDKGAAAVLVSNPEACSG--------- 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P LVV+N    L         +     + VTG+ GK+SV   +  +  ++G +       
Sbjct: 77  PRLVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGKTSVKEALAAVFIKAGPAH------ 130

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                    +  +  +   +   L+ +       V     +H G        ++      
Sbjct: 131 --------WSEKSYNNHWGVPLTLARMPEATRHAVFEMGMNHKGEISELTRMVRPHVAMI 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           T +   H++   + +A  +AK  +FE L   +  A+I ADD ++  +M+    +G   +L
Sbjct: 183 TKIAPAHLENLGSMEAIADAKAEIFEGL-EADGVAVIPADDEFAPRLMQAVQGSGAGFML 241

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G   G  + +       +     + V GK  DF   LPG  Q  NA       +  G+
Sbjct: 242 DFGLTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGVVAAALGAGV 301

Query: 328 DSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVD-YAHTSNSLEM---ILKNIRTIT 380
           D  L L+ L +L    GR   F    +  R   +  + Y     S+     +LK  +   
Sbjct: 302 DPDLALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFGVLKLRKPSG 361

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNPRSEDPEKIRAEI-IHG 435
             R I V G   +     R +   +A        D  I   +  R      +   +    
Sbjct: 362 QDRKIAVIGEMLELGPDSRALHAALAEPLITAGVDQVIGVGEGAR-----ALMDALPAEH 416

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              + E      AI T  E+    DV++V G
Sbjct: 417 RAAWCETA--ESAIETLSELARDGDVVLVKG 445


>gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
 gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
          Length = 474

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 140/411 (34%), Gaps = 28/411 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     ++   L+   +Q  +  I  VS+D+R +  G +FVA+ G + DGH  +  A  
Sbjct: 1   MMRASLQQVATWLNQLSVQQPDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARL 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A +VS              + P + V++T   L        G+    ++A+TG++G
Sbjct: 61  AGAAAAIVSH--------LNPDIDLPQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  IC ++G +   +G  +                      LS         +
Sbjct: 113 KTTVKQLLASICAQAGPTLATLGNLNN-------------DIGVPLTLLSLSDIDQFAVI 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G         +   G  T  G  H+    +  A    K  LF  L+P E+ A+
Sbjct: 160 EMGANHLGEIARLTALARPDVGLITMAGTAHVGEFGSVDAIVQGKGELFVGLVP-EAQAV 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFL 303
           I  D   +                                   +++TI   G+       
Sbjct: 219 INLDSYGADRWWAMGSAQRN---GFTLNNDPRARWTGEYNATTERLTIFENGQLLIESQP 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG     N L A  +    G    ++L  L       GR   V  + +   I   Y 
Sbjct: 276 LPLPGAHNATNLLAAVAVARTAGFSKEIILAGLNSFTPPAGRMSLVACSEQLTVINDTYN 335

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               S+   L  +     G  + V G  G+       +  ++      +AI
Sbjct: 336 ANPESMCAALDYLVG-RPGLHLAVLGDMGELGDLSAALHEEVIAYARGLAI 385


>gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 459

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 100/494 (20%), Positives = 196/494 (39%), Gaps = 80/494 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL  +D  E  N + +     RE K++ +S+D+R+I    +F+A+ G K DGH F+
Sbjct: 1   MKL-DLTVEDILEATNGV-LIKGDIRE-KVDSISTDTRNINEDEVFIALKGEKFDGHDFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +G + I++S   +++        N  ++ V +T K L   A+    K    ++ V
Sbjct: 58  KDAILKGVKGIIISREIAVE-------GNIFVIRVQDTLKALQDIANYYRRKLKTKVIGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++  + + ++    G +         +S    +N +  P  I         + +
Sbjct: 111 TGSSGKTTTKNLIGKLLSIVGKTY--------VSRENFNNEIGVPLSIL-------DAEE 155

Query: 181 GVTHVSVEASSH--GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            V  + +E +    G         +   G  TN+G  HI    +++A   AK  +FE  +
Sbjct: 156 DVDFLVLEMAMRNKGEISLLSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEH-I 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--- 295
            ++  AI+  DD +S  + ++      +  + G+  +   L+      N++   + +   
Sbjct: 215 KQDGVAILNNDDPFSMRIYEKLK---IKKYTFGFDER-SDLRGEIVEKNEENYLLKINFP 270

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +GKD     P+       N L++  +     I    V    +  +    +          
Sbjct: 271 DGKDIKLSLPIYPLNIYRNLLLSLLVLWV--ISPESVYSLEKDFYFDLPKQRLNLKRKEN 328

Query: 356 GRIYVD--YAHTSNSLEMILKNIRTIT-SGRIIV----VFGCGGDRDQGKRPIMGKIALD 408
           G + +D  Y    +S+   ++ +  +  SGR IV    +   G     G R ++ ++   
Sbjct: 329 GLVIIDDTYNANPDSMRTAIEYLDLLKSSGRKIVLLGDMLELGDHSIDGHREVIEEVFKR 388

Query: 409 LADIAIVTDDNPR----------------SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
             D+AI      R                S+DPE+I++ + + +                
Sbjct: 389 NIDMAIFYGPEMRKALDTYQNLDKKRIYWSKDPEEIKSILKNSLC--------------- 433

Query: 453 IEMLNKQDVLVVAG 466
                  D ++V G
Sbjct: 434 -----AGDTILVKG 442


>gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
 gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
          Length = 466

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 153/454 (33%), Gaps = 47/454 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWAVSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQALEKGAGAALVSR------VPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P+L+VD+ +  L         +    ++AVTG+ GK+S    + ++    G +   
Sbjct: 73  PADAPLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKTSTKEMLARMLSDQGRTHAA 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
           +               +  +   +   L+ +       V     +H G         +  
Sbjct: 133 V--------------ASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAKPARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++     +     K  + E L P    A++ AD A +  +   A + G 
Sbjct: 179 VAMVTTVAAVHLEAFDNVEGIAREKAAIMEGLEP-GGVAVLNADIAEAHVLRDVASDLGV 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G       L        +        G++ +      G     NAL A     A+
Sbjct: 238 SARWFGESASDYTLHSAGIEGEETVARAIANGREVELHIQSLGAHFAMNALGALACVEAL 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVD-YAHTSNSLEMILKNIRTITS- 381
           G D       L     V GR         GG I    D Y     S+   L  +      
Sbjct: 298 GADPVKAAGSLALWSPVKGRGVREAIRLEGGTITLLDDSYNANPTSMAAALAVLAATPGQ 357

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI--RAEIIHGIPGF 439
           GR I   G   +    +  +   +A   A   I           +KI     ++  +   
Sbjct: 358 GRRIAYAGDMKELGPQEVELHAGLADLDAVKGI-----------DKIHCIGPLMRALHEA 406

Query: 440 IEKGNR-------IEAIRTAIEMLNKQDVLVVAG 466
           + +G R        EA+      +   D+++  G
Sbjct: 407 LPEGKRGGWYQTSAEAVPGLASEIQGGDIVLAKG 440


>gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 453

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 156/420 (37%), Gaps = 36/420 (8%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +  D  +++N            +I  ++ DSR ++ G +F+  +G   DGH FI  A  +
Sbjct: 4   LVTDLEKILNAKKANITS--NVEITGIAIDSRKVKQGDLFIPFLGENVDGHNFIESAFEK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A     + SL+D      S   I+ V+++ + +   A           +A+TG++GK
Sbjct: 62  GAAA-----SLSLKD---DFVSENNIIYVNDSYEAIQTLAKHYLESLNAKTIAITGSNGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +         +     T  +F  +  +           L+      +  + 
Sbjct: 114 TTTKDIITSVLST------KYKVHKTQGNFNNELGVP-------ITILAAPEDSEILVLE 160

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A   G        ++      TN+G  HI++ ++++    AK  +    + K+   + 
Sbjct: 161 MGADDFGQLDFLSKLVEPDYTVITNIGESHIEFFKSREGIAKAKFEI-TNGMKKDGYFVY 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+   K ++    ++     S G +  +  +        + ++   +   D  +   L
Sbjct: 220 NGDEVLIKTLVD---SSEINATSCG-ENSYNDIILESYTITRDKIDFKLNISDEQYFTKL 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK-LHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G+  +YN + A  +   IG+ +  + + +E  + +   R + +        I   Y  +
Sbjct: 276 KGKHNLYNIMFATAIASKIGLTNEEIHKAIENTVEITGMRLQSIPYKEDSLIINDAYNAS 335

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLA------DIAIVTDD 418
             S++  +  + +        +V G   +    +    G++   ++      D+ I   D
Sbjct: 336 PTSMKAGVDVVSSYDDFDYKTLVLGSMFELGPNEVNYHGEVGEYISENTNDIDLVISVGD 395


>gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 471

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 152/400 (38%), Gaps = 30/400 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+   +   +   +  ++ ++ D+R + AG +++A+ G + DGH F   A+A+GA A++V
Sbjct: 8   LLAHWAGGELHGPDVAVDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAVALLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                       +  + P L+V+++   L+  A+ +       ++A+TG++GK+SV + V
Sbjct: 68  ER---------LLDVDAPQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALV 118

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             + Q++G +    G  +                 +                 + A   G
Sbjct: 119 LSVLQQAGQAYANPGNRNNEIGLPLAVIDAPEDADF-------------AIYEMGAGKPG 165

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +  D  +       N+   H++           K  ++  L P    A++ ADDA+ 
Sbjct: 166 DIAYLTDIARPDVSLVNNIAAAHLERMGDLLGVATTKGAIYAAL-PAGGTAVVNADDAFG 224

Query: 254 KEVMK---RAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               +   R    G ++L  G      +  + V A     +  +     +      LPG 
Sbjct: 225 AWFEQEVVRPAGTGRQLLRFGLDASAEVTARDVQAGAEGSRFVLVTPQGEAAIELALPGR 284

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL AA + +A G+  A +   L +   V GR   V     GG + VD ++ +N  
Sbjct: 285 HNVRNALAAAAIGLACGVSLAAIAAGLGQARPVAGRQ--VAHGLPGGVVLVDDSYNANPG 342

Query: 370 EMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALD 408
            +         SG    +V G   +       +     L 
Sbjct: 343 SVAAAIDALAASGDEAWLVLGDMRELGPEAATLHADAGLR 382


>gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
 gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
          Length = 456

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 100/446 (22%), Positives = 163/446 (36%), Gaps = 34/446 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+ VS+D+R I  G +F+A+ G   D H F+  AIA GA A++V+         +
Sbjct: 18  GADVSIDGVSTDTRAITEGQLFIALAGENFDAHDFLAPAIAAGATALMVADE-------S 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + +  P +VVD+TR  L   A+    K    ++AVTG++GK++    V  I + +    
Sbjct: 71  KVPTGVPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKTTTKEMVAAILKAA---- 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F     ST  +   D              L   +S     + +  +  G   +       
Sbjct: 127 FGAAVLSTRGNLNNDIG-------LPLTLLGLRASHRAAVIEMGMNHPGEIGYLAPIGAP 179

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN  R H++           K  +F  L P    A+I ADDAY+      A    
Sbjct: 180 TVALITNAQRAHLEGMGDLDEVAREKGSIFLGL-PANGVAVINADDAYAGLWRGMAGGRP 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R  + G         KV     +  + +S    D   +  +PG     NA+ AA  C+A
Sbjct: 239 VR--TFGIDNAADVSAKVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVAAAAACLA 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            GI    V+  LE    V GR +   T  +G  I  D Y    +S+   +  +      +
Sbjct: 297 AGIPMVAVIAGLEAFSGVKGRLQR-RTGKQGAEILDDTYNANPDSVRAGIDVLAATIGRK 355

Query: 384 IIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           ++V+   G   +        I G       D           E  ++       G   + 
Sbjct: 356 LLVLGDMGEIGEASGQYHDEIGGYAKSQGIDRLF-----ALGEAAQQAVRNFGEGAKHYC 410

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
                I A+      L  +  ++V G
Sbjct: 411 NVDKLIAAVDK---ELGPETTVLVKG 433


>gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
 gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
          Length = 430

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 156/423 (36%), Gaps = 48/423 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 54  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G                 + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQG--------------NYNNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +      H  D H L  I K      T +G  H+++  +++     KM++ +  
Sbjct: 150 EDTEKIILEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLEFFGSREKIAEGKMQITDG- 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  +   I   D      ++     A    +  G+      L+       K  +T     
Sbjct: 209 MSSDGILIAPGDP-----IIDPYLPANQMTIRFGH---DQELQVTELKEEKHSLTFKTNA 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+   ++ G  
Sbjct: 261 LEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++ +IL+    I     G+ I +     +  +    +  ++ + +   +
Sbjct: 320 ILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDS 379

Query: 414 IVT 416
           I T
Sbjct: 380 IDT 382


>gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
 gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
          Length = 478

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 94/485 (19%), Positives = 171/485 (35%), Gaps = 47/485 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+     EL  +        +    + + +DSR ++ G +FV +VG + DGH F+
Sbjct: 1   MRLANLV-----ELWGRPIEAAPADQAASFSRIGTDSRELEPGCLFVPLVGERFDGHGFL 55

Query: 61  PQAIAQGAEAIVVSSA-YSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
             A+ QGA A++      S +   A +R S   I +VD+T+            +    ++
Sbjct: 56  AAALEQGALAVLAQRDRLSAEQAEALVRSSGGRIWLVDDTQAAYQELGRLWRRQGSAPVI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    ++ +    G     +G          +       P+ L   L    
Sbjct: 116 AVTGSAGKTTTRELIRAVLSPLGPVLASVG----------NENNDIGVPLTL---LKAGG 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 V +     G  +      +      TN+G  HI    +++A   AK  +   L 
Sbjct: 163 EHRAVVVEMGMRGLGEIERLSRCAEPDITVITNIGTAHIGRLGSREAIATAKCEIVAALR 222

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQ 289
           P +   +I A D   +     A     RV+ V  Q              L+         
Sbjct: 223 P-DGLVVIPAGDPLLE--ASLAAVWSGRVIRVALQDDPTGPQPGQLLGRLRAGTDGDRLI 279

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   ++     PLPG     N L+A  +   +G+D       L +L V        
Sbjct: 280 WGRAEPGAREHSTELPLPGRHNARNLLLALAVASELGVDPLQ----LSRLEVALPGGRSR 335

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI---- 405
                   +  +  + S    +   ++     GR     G   +  +    +  ++    
Sbjct: 336 RIRLGEIEVLDETYNASPEAMLAALDLLASQGGRRFAALGTMLELGEQSTELHRRVGERA 395

Query: 406 -ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-VLV 463
            AL L  + IV        + E + A    G+P      +  +A +T +  L   D +L+
Sbjct: 396 RALGLDGLVIV----AGGAEGEALLAG-AAGLPRLQRVDSPEDAAQTLLGWLEPGDHLLL 450

Query: 464 VAGKG 468
            A +G
Sbjct: 451 KASRG 455


>gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 504

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 171/457 (37%), Gaps = 51/457 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +  + +   DSR I  G +FV + G + DGH FI  A   GA A           FS
Sbjct: 68  QFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVAT----------FS 116

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             +    P ++V++        A+    K   ++ AVTG++GK++    + Q+   + L+
Sbjct: 117 EKVVEGHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLT 176

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
               G  +                  L              V      H  D H L  + 
Sbjct: 177 YKTQGNYNNEIGLPYTVLHMPEGTDKL--------------VLEMGQDHLGDIHLLSELA 222

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A   T +G  H+++ + +      K+++ +  +P+    ++ AD      ++     
Sbjct: 223 HPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADG-MPEGGLLVVPADP-----IVDAYLP 276

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V+  G       +     I  K  +T      +     P+ G++   NA++AA + 
Sbjct: 277 EKQTVVRFG---PDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVA 333

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-- 379
           +  G+  A + +  E L +   R E+    S G  I  D Y     ++ +IL+   TI  
Sbjct: 334 LQEGVSEAAIRDSFETLQLTRNRTEW-KKASNGADILSDVYNANPTAMRLILETFSTIPA 392

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEI-- 432
             +GR + V     +  +    +  ++ L L+    D  I    +       ++ +++  
Sbjct: 393 NPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFP 450

Query: 433 ---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              ++      E+    + ++   E L +QD +++ G
Sbjct: 451 LGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKG 487


>gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 419

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 143/401 (35%), Gaps = 47/401 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     E+    +   +   +  IN V +D+R    G +FVA++G   D H +I  A  
Sbjct: 1   MLQTKLKEIAKIFNSQALLGSDIIINGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEK 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA AI+ S           +++N P++ VD+T   LS  A+         ++A+TG++G
Sbjct: 61  MGAVAIIASK---------QVKTNLPVIKVDDTETALSTIATWHLNNIKPTVVAITGSNG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I      +    G  +          +  P                   +
Sbjct: 112 KTTTKNMLANILNLKAPTLKTQGNLNNHLGVPMTLLMLEP-------------KHQFAVI 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G  +H  D         TN    HI           AK  ++       S  I
Sbjct: 159 EMGANHLGEIKHLRDITHPHIAVVTNTLDAHIGEFGGFNNLVKAKGEIY----HTNSQNI 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +  ++ ++            S G  G         +  N  Q  ++++ +       
Sbjct: 215 VNTNTTFTGDI------------SFGKDGDVFA-----SNINSHQFDLNIKNEKIAVSLQ 257

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           L G+  + N+L A+    A+ ID   + + LEK     GR   +    +G  I  D Y  
Sbjct: 258 LLGQHNIENSLAASACAYALDIDINTIKKGLEKTQAEKGRLTIIH--RQGLTIIDDTYNA 315

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +  S+   +  + +   G  I V G   +     +    +I
Sbjct: 316 SPQSMRAAIDALLSF-DGEKIAVLGSMAELGNDSKTFHQQI 355


>gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
 gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
          Length = 455

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 155/417 (37%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P+    + ++ + +DSR IQ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLGLPVPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +A GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 55  EDVLAAGATAVVVSREDCAALKGA--------LKVDDTLAALQKLAKAWRENVNPFVFGI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  + +            +T  +F           I L   L  L+ +
Sbjct: 107 TGSSGKTTVKEMLACVLR---HRFGNEAVLATAGNFNNH--------IGLPLTLLKLNEK 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
               V     +H  +   L  I         N  R H+            AK  ++E LL
Sbjct: 156 HRYSVIEMGMNHFGELSLLTQIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLL 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA        A  A     + G     +H + +       +  +    +
Sbjct: 216 -SDGIALIPCEDANIATF--EAATAQLNAQTFGVASGDVHAENIELKPLSCEFDLVRGNE 272

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + P+PG   V+NA+ AA L +A G+  A V + L+    + GR   +    +G  +
Sbjct: 273 RVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFSNIKGRLN-IKQGIKGATL 331

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 332 IDDTYNANPDSMKAAIDVLAAMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDKGI 388


>gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus influenzae 10810]
          Length = 457

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 95/460 (20%), Positives = 166/460 (36%), Gaps = 33/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ Q         V
Sbjct: 8   QLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQ--------AV 59

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
              A ++         + P LVV +TR  L   A  L  K     +A+TG+SGK++V   
Sbjct: 60  AQGAVAVVVQQENSSISIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEM 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I Q +   S  +    T  +F  D  +           L          + + A+  
Sbjct: 120 TASILQHTAADSEAV--LFTNGNFNNDIGVP-------LTLLRLTEKHRFAVIELGANHQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               +    ++  A    N+   H++   +      AK  ++  L  K   AII A+  +
Sbjct: 171 NEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAIINAEHNH 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                K   N   +     + GK   +K V         T+     + D   P  GE  V
Sbjct: 230 LDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNV 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L + +G   A V   LE+   V GR   +        +   Y    +SL   
Sbjct: 286 KNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNANKDSLCAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++  +  I+ V       +      R +   + L   D+           +   + 
Sbjct: 346 IDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVNLVNLDLVC------SYGNESAVI 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 400 SEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 438


>gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 487

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 101/489 (20%), Positives = 164/489 (33%), Gaps = 61/489 (12%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L   D  E +    +      E     V  DSR +  G +FVA+ G + DGH F  +A+A
Sbjct: 4   LSLADIAEAVGG-RLHRADGSEIVSASVEFDSRKVAPGGLFVAVPGERVDGHDFAARAVA 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA------------------- 106
            GA  ++ +                 ++V     +   L A                   
Sbjct: 63  DGAAGVLAAREVDAP----------AVIVPPVPAEATGLMALAGDTDGSGAAVLAALARL 112

Query: 107 -SRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
              +  + P   ++ VTG+SGK+S    + Q+ +  G +    G  +             
Sbjct: 113 ARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQLLEPMGPTVAPPGSFNNELGHPWTALRAD 172

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
               +L   LS             A   G      +      G+  N+G  H+    +Q+
Sbjct: 173 EDTRHLVLELS-------------ARGVGHIAKLCEVAPPRIGAVLNVGHAHLGEFGSQE 219

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVC 283
           A   AK  L E L P +  A++ ADD     V   A     RV+ VG   G  +  + + 
Sbjct: 220 AVARAKGELVESL-PADGVAVLNADDPL---VAAMASRTRARVVLVGESPGAHVRAEDIV 275

Query: 284 AIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +   T+           PL GE  V NAL AA + + +G     V + L  +  V
Sbjct: 276 LDEQARPSFTLVAPQGSAQVSLPLHGEHHVGNALSAAAIALELGATLEQVADRLSGVRRV 335

Query: 343 PGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRD 395
             R   V   + G  +  D Y     S+   LK + ++T    GR   V G     G+  
Sbjct: 336 SARRMEVAETADGVTVVNDAYNANPESMRAALKTLASMTRGRPGRAWAVLGVMGELGESG 395

Query: 396 QGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 +G++A+    D  +V  D                     +   +   A+     
Sbjct: 396 AQAHDEIGRLAVRLNIDRLVVVGDQAAGMHHGASLEG--SWGEESVLVPDVDAAVALLRA 453

Query: 455 MLNKQDVLV 463
            L   DV++
Sbjct: 454 ELRPGDVVL 462


>gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
 gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
          Length = 449

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 165/445 (37%), Gaps = 41/445 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+ + GN+ DGH ++  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIVLQGNR-DGHDYVLDAIDKGAAAVIVSKQVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFETLQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQYDSLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G  +  +  +K      T
Sbjct: 135 NNRLGLLINLASMADDTEYAIFEL-------------GMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269
           N+   H+++  + +    AK  +FE    K   A+I AD     +++    N    RV +
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFENF-SKNDIAVINADINCYNKIVSILKNLSINRVYN 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G        + V   +  +QV +   +  K  +   P        N      +   +G 
Sbjct: 241 FGISHNTP-AQLVLYENLGEQVHLKYKINNKSLEITIPFIPRHFAENYTAILLIIDILGK 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  +   HL  +    GR E +  N +  RI  D Y  +  S++  L+ ++ + +     
Sbjct: 300 DIEIAANHLANIPPNKGRGEII--NIQNSRIICDYYNASPQSMKAALEYLKQVPAENKTA 357

Query: 387 VFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSEDPEKIRAEI-IHGIPGFIE 441
           + G   +  +  + +  ++   + D       +   N +      I   +    +  + +
Sbjct: 358 IIGDMLELGENSKRLHEELVPYILDAGCSKVYLVGVNTKY-----IYDLLPPKIVKKYFK 412

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  E I    ++    +++++ G
Sbjct: 413 NVD--ELITHITDLFESNELILIKG 435


>gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
 gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
          Length = 453

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISVVSTDSRQIPAEALFVALVGERFDAHDFASQAVIGGAVALLVERELD------ 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 73  ---ADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L   +      + + A+  G   +    +K 
Sbjct: 130 Y------TQGNFNNDIGVP-------LTLLRSTAEDDYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L    + AI+  +            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGL-RAGAVAIVNLESHGGDLWKTDLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSTTDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  +   ++ R
Sbjct: 296 EMGASLAEIRHGLAHLAKVKGRVDLTHLRQDITLIDDSYNASVPAMKAAVDLLGGFSAVR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       D+       +G+ A   +   ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFSFEFVLT-----YGKDAKVISDLCQG 404


>gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 472

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 154/414 (37%), Gaps = 29/414 (7%)

Query: 11  FPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F +L++ +    + +  E  +  +S DSR I     F AI G+  DGH F+  A+ + A 
Sbjct: 7   FHDLLHAIQGKALGEVPEDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHAVQKSAC 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V+    + +  ++    + P+ VV++    L+  AS    +    I+A+TG+ GK++ 
Sbjct: 67  LVVI----NAEMMASIGPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGSVGKTTA 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++     +G     I               +  + I +   L+ + +     +    
Sbjct: 123 KEMLKLALSSAGKIHVSI--------------ASYNNHIGVPLTLAQMPADAEFGIFELG 168

Query: 190 SSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SH G  +     ++      T +   H+      +   +AK  +FE L  K    ++  
Sbjct: 169 MSHLGEIRFLTHLVRPHIAMITTIAPAHLGNFSGIEEIASAKSEIFEGL-EKTGTVLLNR 227

Query: 249 DDAYSKEVMKRAHNAGCR-VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD++ + + +++H  G   V + G        L  +     + ++ + ++GK  + +   
Sbjct: 228 DDSFFEFLKEKSHLLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAEVVHHA 287

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YA 363
            G     N L   G+   +       ++ +   +   GR   +      G    +D  Y 
Sbjct: 288 VGRHMAQNILATLGIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLIDESYN 347

Query: 364 HTSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               S+     +L  I     GR I V G   +  +        +A  L    I
Sbjct: 348 ANPTSMRAAISVLSQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSYNI 401


>gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 455

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 137/367 (37%), Gaps = 33/367 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R+I+ G +F+A+ G   DGH F+ +A  +GA A VVS              N P
Sbjct: 25  NISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKGAAAAVVSEDK---------YRNLP 75

Query: 92  ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++VV +T K L   AS           ++A+TG+ GK++    +  +  + G+S    G 
Sbjct: 76  VIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTTKDMLHTVLSQYGVSHVNDGN 135

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +              +  YL                +  +  G  +             
Sbjct: 136 LNNNIGLPLTILKAPENCRYLILE-------------MGMNKAGEIKELSKISNPNIAVI 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   H++   +      AK+ +    +      I+  D+ Y   ++         V+S
Sbjct: 183 TNIEPVHVENFSSLFDIAQAKLEILYG-VKNNGTLILNKDNKYYDYLLSHVDR---DVVS 238

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G  +   + L  V        + I +   +  +    + G+  VY+ L    +   +G+
Sbjct: 239 FGRSESATVCLLNVIKNDKGLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAVVAVIQNLGL 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
           + + +   LE  ++  GR         G    +  D Y  +  S++  ++ +   ++ R 
Sbjct: 299 NLSKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAAIRTLGIYSNRRK 358

Query: 385 IVVFGCG 391
           + + G  
Sbjct: 359 VALLGDM 365


>gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
 gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
          Length = 478

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 140/387 (36%), Gaps = 35/387 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + K++ +S DSR +  G +FVA+   + DGH ++  AI +GA   ++SS           
Sbjct: 22  DWKVSGISIDSREVAKGDLFVALKDLR-DGHEYVSSAIEKGAAGALISSDCG-------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P + VDNT   L         +      A+TG+ GK+SV   + QI +  G + + 
Sbjct: 73  --DVPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGKTSVKEMIAQIFRSKGKAHWN 130

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGIKLI 205
           +               +  +   +   L+ +       +     ++ G    R   ++  
Sbjct: 131 V--------------KSFNNHFGVPLTLARMPRDTKRAIFEIGMNTPGEIAPRSRMVRPQ 176

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG- 264
               T +   H++   T +A  + K  +F  L P    AI+  +D +   +  R  +   
Sbjct: 177 IALVTKIAGAHLEGMGTIEAVADEKSDIFCGLEP-NGVAILPREDDFFDYMKARVFDCQP 235

Query: 265 -CRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              +LS G         L       N  Q T  + G+   F     G+    NA++A  +
Sbjct: 236 TASLLSFGGAQSEADARLISFEPEGNGSQGTADILGETVSFQLNAIGDHWGMNAVLAILV 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
               G+ +    + L+      GR   E +        +  D Y     S+   L  +  
Sbjct: 296 GRLSGMSAQEAADGLKGYTPPAGRGAAEILKMPFGEITLLDDSYNANPESMRAGLAALGQ 355

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKI 405
             SGR I + G   +       +   +
Sbjct: 356 -RSGRKIAILGEMRELGPDADKLHADL 381


>gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
          Length = 300

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 136/291 (46%), Gaps = 17/291 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+   SL       
Sbjct: 20  EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSL------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
            +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  SANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     I+        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK  LF +L   L KE   ++  DD++S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR--- 249

Query: 261 HNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 V S G   +   + + +                 +    P  G+F
Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYVGKF 300


>gi|315186405|gb|EFU20165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 470

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 169/483 (34%), Gaps = 49/483 (10%)

Query: 1   MKLQDLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M  + L      +L + +   +         I  V+ DSR  + G +FV + G   DGHL
Sbjct: 1   MSARTLPALSLDQLASIVGARLVAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHL 60

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT----PILVVDNTRKFLSLFASRLYGKHP 114
           ++ +A  +GA A +V      +  SA ++        +LVV +T + L            
Sbjct: 61  YLGEAFQRGASAALVQETVFSEAGSALLKHVVQTRGALLVVPDTLEALQTLGEWYLSSLR 120

Query: 115 ENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             I + VTG+SGK+S    ++ +              +T  +   +  +           
Sbjct: 121 VPIRIGVTGSSGKTSTKEMLRAVLSL-----HYSRVWATEGNLNSEIGVP-------LSI 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L       V    +     G        +K      T +G  H++   T++     K ++
Sbjct: 169 LGIREEPEVVICEMGIDHVGEMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKI 228

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F       S   I  D+ +              VL  G++G F+          +   + 
Sbjct: 229 FSSF-DDRSVGFIPEDEEFF------------HVLVEGWRGTFLPYGPATVEGFEGWESR 275

Query: 294 SVEG-----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +EG     K         GE  V NAL    L   +G+  ++V E L+    + GR E 
Sbjct: 276 GLEGVILLWKGLRIPLQGYGEHMVRNALGVIRLSDHLGVPPSMVAEGLQAYRPLFGRGEL 335

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQ----GKRPIMG 403
                    +   Y     S+   L+ +R +    R IVV G   +         R +  
Sbjct: 336 KEIGGVWFLV-DCYNANPESMRASLEGVRGLKGVRRRIVVLGSMRELGDAAPSEHRRLGD 394

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +A   AD+ ++       E+ E   A ++ G  G        EA    + ++ + D+++
Sbjct: 395 YLAGYPADVVLL-----VGEEMEAAFA-VLEGRSGVWWMRTVEEASSLLVSIVQEGDLVL 448

Query: 464 VAG 466
           + G
Sbjct: 449 LKG 451


>gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
 gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
          Length = 426

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 158/444 (35%), Gaps = 51/444 (11%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            +S+ ++ G +FVA+ G + DGH FI +A+  GA AI+        D          I +
Sbjct: 11  LNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSDR---------IFL 61

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V+++   L+  A    G     ++ VTG+SGK++    +  + +         G  +T  
Sbjct: 62  VESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNT-- 119

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                              L+    + +  + + AS  G   H             N+G 
Sbjct: 120 -----------EYGLPLSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGS 168

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+++  T++     KM + +    + + A+   DD   ++ + R  N     L  G +G
Sbjct: 169 AHLEFFGTRERIMETKMEIIKH-SKENAIAVTLFDDPDLRKEVPRYRN----TLFFGKEG 223

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVL 333
               LK                   F           Q+ N   +  +   +G    +  
Sbjct: 224 GDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSGYWNGGQLLNIAASLCVMRTLGETVDIFD 283

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
             L  L  VPGRF       +G  I  D Y  +  + +  ++ +      +  VV     
Sbjct: 284 --LASLKTVPGRFN--VREKKGVLIVDDTYNASPEAFQTSIEALLRFPGKKFAVVGAMKE 339

Query: 393 --DRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEKIRAEIIHGIPG 438
             +R +     +G+  L++ D   V    P            +S+DPEKI  ++   +  
Sbjct: 340 LGERSKEFHEELGER-LNVLDGVYVFLSEPEAEWIKSKKIILKSDDPEKIAKDLATRVKK 398

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQ 459
               + K +R   I   +EM  K+
Sbjct: 399 GDVVLFKASRAVRIERVLEMFEKE 422


>gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
 gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
          Length = 449

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 167/447 (37%), Gaps = 45/447 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G  +  +  +K      T
Sbjct: 135 NNKLGMLINLASMADDTEYAIFEL-------------GMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLS 269
           N+   H+++  + +    AK  +F     K   A+I AD     +++      +   + S
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFANF-SKNDIAVINADTNCYNKILSILKKLSITDIHS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   K    + +   +  +QV +   +  K  D + P        N      +   +G 
Sbjct: 241 FGRSAK-TSAELILYENLGEQVYLKYKINKKVLDVMIPFIPRHFTENYTGVLLIIDILGK 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  +   HL  +    GR E +  N +  R+  D Y  +  S++  L+ ++ + +     
Sbjct: 300 DIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTA 357

Query: 387 VFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSED---PEKIRAEIIHGIPGF 439
           + G   +  +  + +  K+   + D       +   N +  +   P KI          +
Sbjct: 358 IIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIA-------KKY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +  E I    ++    +++++ G
Sbjct: 411 FKNVD--ELITHITDLFEGNELILIKG 435


>gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
 gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
          Length = 451

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/496 (17%), Positives = 187/496 (37%), Gaps = 66/496 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      +++N   +    +   +++ V  DS++++ G +FV I+  K DGH ++
Sbjct: 1   MNLKKL-----EKVVNGEGLQ-ESFHLIEMHGVCIDSKNMKEGNLFVPIIRVK-DGHEYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRRELNVKVIGI 107

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++V   +  I        +  G  + QIG   TI    +D              
Sbjct: 108 TGSNGKTTVKDIIGGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILE------- 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +  S  G  ++     +      T +G+ H++   +++    AK  +
Sbjct: 161 -------------MGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEI 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT 292
            + L   +   +   D+    + +         + S  + GK+   L       ++  V 
Sbjct: 208 IDGL-NDDGLFLYNGDEPLLSQNINMLG-----IESKSFGGKYTNDLFPTNVQLDEYGVH 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +      +  PL G+  + NA+V   +     +    + E L+++++   RF+F+   
Sbjct: 262 FKLNNTKIQYDVPLHGKHNILNAIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAK 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALD 408
           +    I   +  + +S++  ++ ++ + +    ++            +     +GK+  +
Sbjct: 322 TGFTIINDAWNASPSSMKAAIETLQKLNAYEKKIIVIGDMLELGKEAKTYHREIGKMLNE 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +   + T          +I AE          +  F  K    E I   I    K+DV+
Sbjct: 382 ESIQYVFT-----YGALSEIVAEEARKNYHTEKVQSFDNKDEIAEEILKVIT---KKDVV 433

Query: 463 VVAG-KGHETVHIVTN 477
           ++ G +G     IV N
Sbjct: 434 LLKGSRGMALEEIVQN 449


>gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
 gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
          Length = 472

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/489 (19%), Positives = 184/489 (37%), Gaps = 51/489 (10%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I+K    +  +   ++   Q     I  V +DSR IQ G +FV IVG K DGH F    
Sbjct: 1   MIHKSLKSIADLCGGTLSRNQDANIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESV 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A GA A      +           + P+++V++T   L   A+    +    ++ +TG+
Sbjct: 61  LASGAGAAFWQRDH-------QPVPDLPLILVEDTLTALQSLAAAYLSETSAKVVGITGS 113

Query: 124 SGKSSVASFV-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +GK++V   V        ++ +  G  +  IG   T+                    L+ 
Sbjct: 114 NGKTTVKDMVSALLETTYKVHKTQGNYNNHIGLPLTV--------------------LAM 153

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +  + +  S     +      +      TN+G  H+    +++    AK+ +   
Sbjct: 154 KEDTDIIVLEMGMSGRHEIELLSTIARPDMTVITNIGEAHMLQLGSREEIARAKLEIISG 213

Query: 237 LLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           + P     I + D+    +V+         G    + G Q            H +  +  
Sbjct: 214 MKP-GGLLIYHGDEPLIDQVLAEESTVKPEGLNTFTFGNQETNDDYPTGLMFHARGIIFT 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S       F  PL G   V NAL A  +   +GI    +      L +   R E V T  
Sbjct: 273 SNRHAGEGFSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFANLKLSSMRIEAVETP- 331

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IAL 407
            G  +  D Y  +  +++  +  +  +    + I V G     G R+      +G  ++ 
Sbjct: 332 FGVTVLNDAYNSSPTAVKAAVDVLGDMKGYRKRIAVLGDMLELGQREGEFHAEIGDYLSP 391

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
           D AD+       P S    + RA++       +   ++ + I + +E ++++D+++V A 
Sbjct: 392 DNADLVFTYG--PLSVHTAE-RAKLRFPDGAVLSFTDKEKLIASVLEHVSEKDIVLVKAS 448

Query: 467 KGHETVHIV 475
           +G    H+V
Sbjct: 449 RGMRLEHVV 457


>gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 492

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 94/509 (18%), Positives = 165/509 (32%), Gaps = 85/509 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++                     R+++ V+ DSR     ++FV I G + DGH FI
Sbjct: 4   MSLQEITTA-----CGGTYYGEPSLLTREVSGVTIDSRKAGKDFLFVPIKGARVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + QGA   +     S          + P ++V +  + L   A          ++ +
Sbjct: 59  PQVMEQGALCTLSEHPLS---------DSFPYILVSSCAQALKDIAEHYRRALGIKVVGI 109

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           +G+ GK+S    +  I        + +G  + +IG   T+                    
Sbjct: 110 SGSVGKTSTKEMIASILEQKYSVLKTAGNFNNEIGLPLTV-------------------- 149

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V  + +  S            +      TN+G+ H++    +     AK  +
Sbjct: 150 FQIQKEHEVAVLEMGISDFQEMNRLAKVAQPDICVLTNIGQCHLENLGDRDGVRKAKTEM 209

Query: 234 FEELLPKESPAIIYADDAYSKEVM-------------------KRAHNAGCRVLSVGYQG 274
           F    P  S   +  DD    E+                       H+      +VG  G
Sbjct: 210 FAHRRPGASII-LNGDDDKLSEIATVHAASFSKQDGTTVVPYSDSTHDETSAASAVGKSG 268

Query: 275 K-------------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                         F   +            I     DF  +  +PG   VYNAL    +
Sbjct: 269 DTTPIFFGKDPHNAFYADEIQSLGLKGTSCKIHAPAGDFTVIISIPGAHMVYNALAGTAV 328

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            I +G+    +   +E L  V GR   + T      I  D Y     S++  L  + T  
Sbjct: 329 GIELGLTLDEIKTGIEALQPVAGRNHMIETEHL--TILDDCYNANPVSMKASLDVLSTAL 386

Query: 381 SGRIIV---VFGCGGDRDQGKRPIMGKIALDLADI--AIVTDDNPRSEDPEKIRAEIIHG 435
           + ++ +   +F  G       R +    A    D+   I T     ++   +  A+    
Sbjct: 387 TRKVAILGDMFELGTKELLLHREVGTYAAEKKLDLLCCIGTLSKAMADGASEFSAQNDTK 446

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I  F  K + + A+ + I    + D ++V
Sbjct: 447 ICYFETKNDFLNAVSSII---KEHDTILV 472


>gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 417

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 146/392 (37%), Gaps = 50/392 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             +  +V +D+R    G +F+A+ G+  D H +I QA   GA AIV +   + Q      
Sbjct: 20  NVEFKDVCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQMGAVAIVANKPVNNQ------ 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LVVD+T+  L+  AS         ++A+TG++GK++  + +  I      +   
Sbjct: 74  ---LPTLVVDDTQIALNTIASWHLKNIKPIVIAITGSNGKTTTKNMLANILNLQAPTLKT 130

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G          +       P+ L   L+         + + A+  G   H    +    
Sbjct: 131 QG----------NLNNHLGVPMTL---LTLEEQHQYAVIEMGANHLGEIAHLCSLVNPNI 177

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN    HI           AK  ++       S  I+   D ++ +V          
Sbjct: 178 AIVTNTLDAHIGEFGGFDNLVKAKGEIYSN----NSHNIVNTQDTFTGDV---------- 223

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S G  G     K V       +  +++  +       L G   + NAL A+    A+G
Sbjct: 224 --SFGKGGDIFASKLVN-----NKFDLNIYKQKISVTLNLIGTHNIENALAASTCAYALG 276

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           ID  L+ + LE      GR E +  N++  RI  D Y    +S    LK ++   SG  I
Sbjct: 277 IDINLIKQGLEVTKAEHGRLEVI--NTKKFRIIDDTYNANPHSTTTALKALQDF-SGEKI 333

Query: 386 VVFGCGGDRDQGKRPIM---GKIALDLADIAI 414
           VV G   +       +    G++A   AD   
Sbjct: 334 VVLGAMRELGNDSEELHLKIGQLAKKSADTFY 365


>gi|309809589|ref|ZP_07703446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170070|gb|EFO72106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 455

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 167/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    +      A    N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDH------ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------ITILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + +       T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +  RA        + G+      +            + ++     
Sbjct: 214 DGKFIFNGDEPL---LQARAQKLNQLQATFGFNSTDT-IYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     + + +L +   +     GR I V G   +       +   +A  L    I  D
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLI--D 387

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +        K   E + G        + EK +    I    E +   D++++ G
Sbjct: 388 ELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLKEDIKPHDIVMLKG 441


>gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
 gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
          Length = 466

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 168/481 (34%), Gaps = 44/481 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L+  D   +  Q  +     + R  + VS DSR ++ G +FV + G K+DGH +I  
Sbjct: 1   MKNLLSFDETSIAVQGMLLKNHTKARGFSSVSIDSRTVKDGSLFVPLRGEKQDGHRYIRS 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTP------ILVVDNTRKFLSLFASRLYGKHPEN 116
           A+ +GA        +   D +               + V NT   L   A     K P  
Sbjct: 61  ALEKGAVLFFADEKFLSVDSNKIKTEKLCDEFSASCIQVKNTLAALQAAARFYLKKFPNL 120

Query: 117 I-LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           I + +TG+SGK++       +  +               S   +                
Sbjct: 121 IKVGITGSSGKTTTKEIAGAVLSQK-------------FSVVMNKGNLNSETGLPLSVFE 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V    +  +  G  +     +    G  TN+G  HI    +QQA    K ++F 
Sbjct: 168 VRDEHEVGIFELGMNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAIAEEKKQIFS 227

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +       D  ++  +         +V+      +   LK +  I +K     ++
Sbjct: 228 --FFDKDCMGFVPDCPFTDFLQA---VPLGKVVCY----ENTTLKNIKKIESKGMYGSTI 278

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             KD +  FPL G   + NA     L   +G+    +   LE +  + GR +F       
Sbjct: 279 FYKDEEICFPLAGNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPIFGRSQF--MQGDV 336

Query: 356 GRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGC----GGDRDQGKRPIMGKIALDLA 410
             ++  Y    +S+   L     T   G+   V G     G +     + I  + A    
Sbjct: 337 DCLFDCYNANPDSMSAALAVFSETKVQGKKAAVLGSMLELGKESAAAHKKICAQAAASDI 396

Query: 411 DIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV-AGK 467
           D   +       ++       I  +G   F    + ++A+  A+ E L++ D +++ A +
Sbjct: 397 DFIYL-----FGKEIGDSGKNINWNGKTVFYFDESEMDALGKALDENLHRGDFVLLKASR 451

Query: 468 G 468
           G
Sbjct: 452 G 452


>gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
 gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
          Length = 448

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 175/473 (36%), Gaps = 47/473 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+     +P   +  KI+ V+ DS+ ++ G +F A+ G   DGH F+ Q
Sbjct: 1   MRSILLEDWVTLMLSNVKYPRSGK--KISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A VVS  Y    F         ++VV++T + L              I+ +TG
Sbjct: 59  AAQSGAVAAVVSKDYQGDSF------GLELIVVNDTTEALKEAGESQSHLLQGTIVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++  +F Q +              S    +A      +   + L+  ++    +  
Sbjct: 113 SIGKTTTKAFTQTLLS------------SVYRVYASPKSYNSQLTVPLSLLMAD-GDEDF 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ--QAYFNAKMRLFEELLPK 240
             + +  S     Q  L  ++      TN+   H+     Q  Q     K ++    L  
Sbjct: 160 VILEMGVSEPKNMQDLLSIVEPEVAVITNITDQHVMNFPDQGVQGIAEEKSQI----LCN 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  D  +    +K++ +A     +   +    + K +     K  V IS    D 
Sbjct: 216 SRVQLLPKDSPWYPHFIKQSMSAEKFSFAFYDETADFYYKVIR----KDSVVISTPEGDI 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF    P +    N L++  L   + +    ++     L + P RFE   +   G +I  
Sbjct: 272 DFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPMRFE--QSIRNGIQIIN 329

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-----ALDLADIAI 414
           D Y     ++   L  I   + G   V+   G   + G     G       AL  A+I  
Sbjct: 330 DAYNACPEAMLAALDAIPHPSEGGK-VILILGHMAELGNYSEEGHTVVANKALSKANIIF 388

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAG 466
                   E    IR  + HG        +  + I   ++  + + D++++ G
Sbjct: 389 FI-----GEKWLPIRHLVKHGACEVSFYPS-AQGIEEMLKKVVQQGDIVLLKG 435


>gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
 gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
          Length = 477

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/465 (20%), Positives = 164/465 (35%), Gaps = 36/465 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA  +
Sbjct: 8   SDLLGAMNGRPVGNLPEGITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIALANGAALL 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS A       A  R   P++VVD+  + +         +    I+AVTG+ GK++   
Sbjct: 68  VVSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTTKE 123

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++ +    G     +               +  +   +   L+ +       V     +
Sbjct: 124 MLRHMLSPLGRVHASV--------------ASFNNHWGVPLTLARMPETTDYGVFEIGMN 169

Query: 192 H-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H G  +     ++      T++   H+    +      AK  +FE ++     A+I  D 
Sbjct: 170 HAGEIRPLTRMVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVV-NGGHAVINRDS 228

Query: 251 AYSKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A  + + K A  AG   V   G   K    L +         +   V G+  +     PG
Sbjct: 229 AQYELLEKAAATAGVSHVHFFGANPKSEFRLAEFAGGAEGSVLWAGVGGRTLEIAIGAPG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHT 365
                NAL A       G D+  V   L  +    GR          G    +D  Y   
Sbjct: 289 RHIAENALAAIAAATLAGADTDRVAASLATMQPEKGRGLRHRLRMGAGYMTLIDESYNAN 348

Query: 366 SNSLEMI---LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+      L++      GR I + G   +  +    +   +A  + D  I       +
Sbjct: 349 PASMRAAITLLRDAEPSPGGRRIAILGDMLEMGEHSAAVHAALARPIVDAGIADVWLTGT 408

Query: 423 EDPEKIRAEIIHGIPGFIEKGNR---IEAIRTAIEMLNKQDVLVV 464
           E      A +   +P  +   +R    +    A+  +   DV++V
Sbjct: 409 E-----MAHLRDALPSEVSVVHRDLVSDLTAYALGAVAAGDVVMV 448


>gi|312874320|ref|ZP_07734352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653951|ref|ZP_07906867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325913189|ref|ZP_08175559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
 gi|311090193|gb|EFQ48605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315488647|gb|EFU78293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325477610|gb|EGC80752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
          Length = 455

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 167/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    +      A    N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDH------ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------ITILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + +       T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +  RA        + G+      +            + ++     
Sbjct: 214 DGKFIFNGDEPL---LQARAQKLNQLQATFGFNSTDT-IYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     + + +L +   +     GR I V G   +       +   +A  L    I  D
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLI--D 387

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +        K   E + G        + EK +    I    E +   D++++ G
Sbjct: 388 ELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVMLKG 441


>gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
 gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
          Length = 431

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/389 (25%), Positives = 154/389 (39%), Gaps = 27/389 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV++D+R + AG +FVA+ G + D H F   AIA GA A++VS           +  +
Sbjct: 2   ITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSK---------RLLVD 52

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +TR  L  FA+ +  + P N++A+TG+SGK+SV      I ++ G   +    
Sbjct: 53  VPQIVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLY---- 108

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T  +F  D  +           L          + + A+  G   +  D  +  A   
Sbjct: 109 --TAGNFNNDIGVPL-------TLLRLTPEHDFAVIELGANHIGEIAYTTDLSRPEAALV 159

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVL 268
            NL   H++   +      AK  +F  L P    AII AD   +S      AH    R  
Sbjct: 160 NNLAAAHLEGFGSLAGVAQAKGEIFAGL-PANGIAIINADSHDWSHWQTTLAHKQVWRFS 218

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +G +    +   +         T+           PLPG   V NAL AA L I++G D
Sbjct: 219 PLGGEDIDFYATDLRIEQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGAD 278

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V   L +L  VPGR   +        +   Y     S+   ++ +  +   R++V  
Sbjct: 279 LDAVRVGLSQLKAVPGRLFPLVLADGKLLLDDTYNANVGSMTAAVQVLAEMPGYRVMVAG 338

Query: 389 GC---GGDRDQGKRPIMGKIALDLADIAI 414
                G   +   R +     L   D  +
Sbjct: 339 DMAELGETAEDCHRQVGNAAKLSGIDKVL 367


>gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
 gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
          Length = 450

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 154/443 (34%), Gaps = 39/443 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NE+  +S+ I+ G +F+A+ GNK DGH +I  AI QGA A++VS    + D         
Sbjct: 23  NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIAD-------KN 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  K L   A           +A+TG+ GK+S    ++ + Q   L+    G  
Sbjct: 75  KIILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         +    L               +  G  +  +  +K      T
Sbjct: 135 NNHLGLLINLASMPDDTEFAIFEL-------------GMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    AK  +FE    K+  A+I +D      ++          +  
Sbjct: 182 NISEAHLEFFNSLEDIAEAKCEIFESF-DKDGIAVINSDSNCYDRILSILKKLSIENIHN 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +     L        +  +   +     +   P   +    N      +   +  D  
Sbjct: 241 FDKSSSAELILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQDLN 300

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--- 387
               +L+ + +  GR + +        I   Y  +  S++  L+ ++ + +     +   
Sbjct: 301 KAAGYLKNIPMTKGRGKIINI-GNSRIICDYYNASPTSMKAALEYLKQMPATNKTAIIGE 359

Query: 388 -FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS---EDPEKIRAEIIHGIPGFIEKG 443
               G + ++  + ++  I         +   N +      PEKI       I   I   
Sbjct: 360 MLELGQNSERLHKELVPYILDLGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELIAST 419

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           N         ++    +++++ G
Sbjct: 420 N---------DLFKNDELILIKG 433


>gi|259500989|ref|ZP_05743891.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190562|ref|ZP_07266816.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus iners
           AB-1]
 gi|309804651|ref|ZP_07698716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808562|ref|ZP_07702458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|329920439|ref|ZP_08277171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
 gi|259167683|gb|EEW52178.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308166043|gb|EFO68261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168190|gb|EFO70312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|328936115|gb|EGG32568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
          Length = 455

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 167/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    +      A    N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDH------ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------ITILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + +       T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +  RA        + G+      +            + ++     
Sbjct: 214 DGKFIFNGDEPL---LQARAQKLNQLQATFGFNSTDT-IYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     + + +L +   +     GR I V G   +       +   +A  L    I  D
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLI--D 387

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +        K   E + G        + EK +    I    E +   D++++ G
Sbjct: 388 ELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVMLKG 441


>gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 455

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 130/388 (33%), Gaps = 26/388 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + + + VS DSR IQAG +F+A+ G + DGH ++ +  A+GA A +V             
Sbjct: 22  DARYSGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVP-------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            S  P L+V +TR  L    +         + AVTG+SGK++V   +  I +  G     
Sbjct: 74  DSTLPQLLVKDTRLALGQLGALNRAAFSRPVAAVTGSSGKTTVKEMLASILRTRGPVHAT 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +                      L          + + AS  G   + +   +   
Sbjct: 134 RGNLNNDLGAPLT-------------LLELAPEHTAAVIELGASRIGEIAYTVAMTRPHV 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N G  H+      +    AK  + E L      A++  DD        RA      
Sbjct: 181 AIINNAGTAHVGEFGGPEKIVEAKGEILEGL-DSAGIAVLNLDDKAFPIWKARAAGRQVL 239

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++           +           +            L G   V NAL AA    A+
Sbjct: 240 SFALTDSSADFFASDIGRDARGCPSFKLHSPKGVEAVQLNLLGTHNVANALAAAAAAHAM 299

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    ++  L  +  V GR       +    I   Y     S+   +  +   +   ++
Sbjct: 300 GVSLFGIVTGLNAVQPVKGRTVAQLAKNGMRVIDDTYNANPTSMCAAVDILAGFSGRTVL 359

Query: 386 VVFGCGGD---RDQGKRPIMGKIALDLA 410
           V+   G      +QG R +    A  ++
Sbjct: 360 VLGDIGELGEWAEQGHREVGAYAAGKVS 387


>gi|330859320|emb|CBX69667.1| hypothetical protein YEW_CM10490 [Yersinia enterocolitica W22703]
          Length = 192

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/193 (40%), Positives = 106/193 (54%), Gaps = 5/193 (2%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N LVA    +++G     +L     L  V GR E      +   + VDYAHT 
Sbjct: 1   MGAFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNAPGK-PTVVVDYAHTP 59

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+
Sbjct: 60  DALEKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQ 119

Query: 427 KIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I A+I+ G+           R EA+ +AI      DV+++AGKGHE   +V N     S
Sbjct: 120 AIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYS 179

Query: 484 VDCDIIREILGLI 496
            D   +  +LG++
Sbjct: 180 -DRVTVARLLGVV 191


>gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 462

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/467 (18%), Positives = 153/467 (32%), Gaps = 56/467 (11%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
                  +N V +DSR    G +F  + G + DGH F  QA  +GA AIV          
Sbjct: 19  QGLENAPVNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGALAIVAHRDLGS--- 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 NTP+L VD+T K L         K    +L +TG++GK++    + ++ +    
Sbjct: 76  ----IQNTPVLAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEILAEVLKTRFT 131

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                   +          +      +    L   ++  +  +                +
Sbjct: 132 VGKNHKNWNNQLGLPLSLLMQKGDEDFWIMELGINNTTDMDELGEI-------------L 178

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A    N+G  H++          AK RL + L   E  A I  D       +KR   
Sbjct: 179 LPDAALILNVGPCHLEGLGDVSGVARAKARLLDYL-RAEHRAFINLDYPD----LKREAG 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A   + +  +  +        +        +++  ++  F  P+ G     N      + 
Sbjct: 234 ARPDLNTTWFSSRDPEADCRVSHSRDNLFVLNLNEEEIPFHAPVQGAHFCENLAAIWAVA 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           +  G+    +   LEK  +   R     + S    I  D Y     S++  L+  R++ S
Sbjct: 294 LEYGMQPDEIQAGLEKSSLPEQRMCI--SRSGDWTIIDDSYNANPMSMQAALETARSLAS 351

Query: 382 GRIIVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           G  +V+        G D  +  R +   +            DN            ++ G+
Sbjct: 352 GGDLVLVLGDMAELGRDEARAHRDLGRSLCAGAFTALFYNGDN---------LEHVLSGM 402

Query: 437 PGFIEKGNRIE-AIRTAIEMLNKQD-------VLVVAG---KGHETV 472
            G   +G+R    I+     L+  D       V++  G    G E  
Sbjct: 403 NG---EGSRKAHKIKDVSSFLSAHDKLGCRHGVILFKGSRRAGMENF 446


>gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
 gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
          Length = 452

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/477 (19%), Positives = 173/477 (36%), Gaps = 52/477 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++ ++ K++  L+  + I       +K+  V+ DSR +  G +F A+ GN+  GHLF+
Sbjct: 1   MVMRPILLKEWSSLLLDIDI---PCSGKKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFL 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A VV+S Y   D+         +L V + R+ L              ++ +
Sbjct: 58  KQAAQSGAVAAVVASDYRGPDY------GLQLLHVADPREALRAAGRTQGALFHGEVIGI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  SF QQ+                 S F +           L   LS L++ 
Sbjct: 112 TGSVGKTTTKSFTQQLL----------------SPFYKVFASPKSYNSQLTLPLSILTAD 155

Query: 181 GVTHV---SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFE 235
           G        +  S     +  LD I+   G  T++   H      +  Q     K  L E
Sbjct: 156 GDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVDKGAQGIAEEKSLLLE 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++  D ++    MK+   A     S+  +    + + +    + + V IS 
Sbjct: 216 RC----GIHLLPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI----HSEGVLISA 267

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D +     P      N ++A  L     +    + +  + L +   RFE       G
Sbjct: 268 PDGDIELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSMRFEQQ--EHNG 325

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-----KRPIMGKIALDL 409
            RI  D Y  + +++   L  +   + G    VF  G   + G         + + A+  
Sbjct: 326 IRIINDAYNASPDAMLAALDAVPIPSEGGK-TVFILGHMAELGRYSDECHIAVARKAVTK 384

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A +          E    +R  +          G+  E +     ++ + DV+++ G
Sbjct: 385 AHVVFF-----VGEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRGDVVLLKG 436


>gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 447

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 136/398 (34%), Gaps = 52/398 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSN 89
           + +S+D+R I+   +F A+ G   +G+ F  QA+  GA  A++    Y L+D +      
Sbjct: 32  DGISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEYHLKDKT------ 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGL 142
              ++V++  + L   A          +LA+TG++GK++    +  +           G 
Sbjct: 86  ---ILVEDVLQTLQDLAHAHRKYLDIPVLALTGSNGKTTTKELINSVLSKKFKTTATQGN 142

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  IG   T+ S  ++  +                        + A+  G         
Sbjct: 143 LNNHIGVPLTLLSMNKNTEMGIVE--------------------MGANHIGEIADLTAIA 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G  TN G+ H++   + Q     K  L++ L+  +    +  DD    E +   H 
Sbjct: 183 APDFGYITNFGKAHLEGFGSVQGVIKGKSELYDYLIAHKGTLFLNLDDPIQAEKLGSTHT 242

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                              +  +++  Q   + +  +      L G++   N   AA + 
Sbjct: 243 FCF---------SAHQETDLNIVYHTAQPFANFQFDEITVNSNLMGQYNTINLAAAAAIG 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381
               I +  + E LE       R + +  N     I   Y     S+E  L+N   +   
Sbjct: 294 TFFKISAEDIKEALEAYVPKNNRSQIIN-NGDQTIILDAYNANPTSMEAALRNFAGLERQ 352

Query: 382 GRIIV----VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G  I     +F  G       + I    A    D  I+
Sbjct: 353 GPKIAFLGDMFELGETSAYEHQFIANLAAQLDIDHLIL 390


>gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 452

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/460 (21%), Positives = 168/460 (36%), Gaps = 46/460 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    +  +  V++D+RH+  G +FVA+VG + DGH F+ QA A GA A VVS       
Sbjct: 16  PPPDVDAPVTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGAVAAVVSR------ 69

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               + S    + V +TR  L + A          ++AVTG SGK++V   +  I  R  
Sbjct: 70  ---RVASPLAQIEVADTRLALGILARAARRAWSGELVAVTGNSGKTTVKEMLAAILSRVH 126

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                    +T  +   D           +     +   G  H+   A +  L       
Sbjct: 127 P------TLATRGNLNNDIGAPQTLLALSSAHRRAVIELGANHLGEIAWTTSLAI----- 175

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   TN+   H+           AK  +   L      A++  DD +     + A 
Sbjct: 176 --PDVAVITNVTGAHVGEFGGIGRIAQAKAEILLGL-SASGTAVLNRDDRFYPMWRELAG 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
           +A      +    +       C    +   T+ V+G         L G + V NAL +A 
Sbjct: 233 DAEVLDFGLDPAARVRAEALACDDDGRYAFTLFVDGVSLGRVRLALLGRYNVRNALASAA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
              A+ + +  ++  LE    +PGR   V    RG R+  D Y     ++   L  +  +
Sbjct: 293 AAWALRVPAEDIVAGLEACRTMPGRMMNVP-GIRGTRLLDDTYNANPGAVRAALAVLAEM 351

Query: 380 TSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            + R   +   G    + +R    +G++A +L    + T             A+    + 
Sbjct: 352 PAPRWCFLGALGELGAESERLHADLGRVARELKIDFLGTFG-----------ADARPAVA 400

Query: 438 GFIEKG---NRIEA-IRTAIEMLNKQDVLVVAG---KGHE 470
            F ++G   +   A +R A + L     ++V G    G E
Sbjct: 401 AFGDRGCHFDDWAALVRYAHDHLPPGASVLVKGSRSAGME 440


>gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 451

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 131/384 (34%), Gaps = 34/384 (8%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
             L   +   L + +        +    +VS+DSR +QAG +F+A+ G    G  F+  A
Sbjct: 8   TPLTAAEIAALCDGV----HHGADFTALDVSTDSRRLQAGELFIALRGPNFRGEDFLAAA 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             QGA A +V+             ++ P +VV +T   L   A     +      A+TG+
Sbjct: 64  KGQGAVAAIVAE--------YQPDADLPQIVVADTLAALQALARDRRERSQAQFFAITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    +Q++ Q  G +   +G  +                      L         
Sbjct: 116 NGKTSTKEILQRLLQTRGQTLATLGNLNN-------------DIGVPLTLLRLRDEDRYA 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A+  G     +   +      TN+   H+    T +    AK  ++      +  
Sbjct: 163 VIEMGANHPGEIAALVALARPDVALITNVAPAHLAGFGTLEGVIAAKSEIYAH---SDGA 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++  D   +     + H+      S+        +       +  +  + V+G D+   
Sbjct: 220 IVLNLDLPAAARWQDQFHDRPQYTFSLNIDAD---VTAHDLAADGSRFVLRVDGSDYPVA 276

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
           + L G   + NAL A       G+  A +   L  L +   R   +   +    IY D Y
Sbjct: 277 WQLVGRHNIMNALAACTAARLAGVSGAQMQATLTGLALHQSRLAAIRVGAH--TIYDDTY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIV 386
                S +  +  +       II 
Sbjct: 335 NANPASFKAAIDVLAAAPQSLIIA 358


>gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
          Length = 426

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 152/444 (34%), Gaps = 51/444 (11%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            +S+ ++ G +FVA+ G + DGH FI +A+  GA A++        D          I +
Sbjct: 11  LNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSDR---------IFL 61

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V+++   L+  A    G     ++ VTG+SGK++    +  + +         G  +T  
Sbjct: 62  VESSVDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNT-- 119

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                              L+    + +  + + AS  G   H             N+G 
Sbjct: 120 -----------EYGLPLSILNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNVGN 168

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+++  T++     KM + +      +    + D    +EV         + L  G + 
Sbjct: 169 AHLEFFGTRERIMETKMEIIKYSKENATAVTFFDDSDLRREV-----PRYRKTLFFGKES 223

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVL 333
               LK                   F           Q+ N   +  +  A+G    +  
Sbjct: 224 GDSVLKGWWYYEGSTIAEFEAFESLFTVKLSGYWNGGQLLNIAASLCVMRALGETVDIFD 283

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
             L  L  VPGRF        G  I  D Y  +  + +  ++ +      +  VV     
Sbjct: 284 --LASLKTVPGRFN--VREKEGVLIVDDTYNASPEAFQTSIEALLRFPGKKFAVVGAMKE 339

Query: 393 --DRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEKIRAEIIHGIPG 438
             +R +     +GK  L++ D   V    P            +S+DPE I  ++   +  
Sbjct: 340 LGERSKEFHEELGKR-LNVLDGVYVFLSEPEAEWIKSEKIILKSDDPEDIAKDLAARVTE 398

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQ 459
               + K +R   I   +EM  K+
Sbjct: 399 GDVVLFKASRAVRIERVLEMFEKE 422


>gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
 gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
          Length = 452

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 154/421 (36%), Gaps = 47/421 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+ + +        + +  IN +  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKLT------LQEIASVVGAQNDVSLFEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A A GA A               I S+ P ++V +  K     A     K   +++
Sbjct: 54  FIDTAFANGAVATFSEK---------NITSDYPYILVVDCLKAFQDLAQYYLEKMRVDVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G                 + I L   + ++ 
Sbjct: 105 AVTGSNGKTTTKDMIATILATTYKTYKTQG--------------NYNNEIGLPYTVLHMP 150

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D   L  +        T +G  H+++  +++     KM++  + 
Sbjct: 151 DDTEKIVLEMGQDHLGDIALLSNLTHPHIAVVTLIGEAHLEFFGSREKIAQGKMQI-TQG 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      I  AD     +++        +V+  G       +       +K  +      
Sbjct: 210 MDGHGILIAPAD-----KIISSFLPEKQKVIRFG---ADEDIFVTELEEHKNYLNFKTNF 261

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +   P+ G++   NA++A+ +   + +    ++  L +L++   R E+    + G  
Sbjct: 262 LDNEIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNLTRNRTEW-KKAANGAD 320

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++++IL+   +I     G+ I V     +    +  +   +   L    
Sbjct: 321 ILSDVYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELGDSELALHAAMIASLDPAV 380

Query: 414 I 414
           I
Sbjct: 381 I 381


>gi|333029695|ref|ZP_08457756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
 gi|332740292|gb|EGJ70774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
          Length = 436

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 148/382 (38%), Gaps = 36/382 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++DSR+   G +F+A+ G   DG+L+  +A+  GA  ++V       +    I  +  
Sbjct: 16  QITTDSRNCPKGSLFIALKGENFDGNLYASKALENGAAFVIVD------NPEVVIEGDDR 69

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++V ++   L   A+         I+A+TGT+GK++    +  +  +   + +  G   
Sbjct: 70  YILVHDSLHALQQMANYHRQMLKTPIIAITGTNGKTTTKELIANVLLKKYKTHYTQG--- 126

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +       P+ +   LS  +S  +  + + A+  G  +     +    G  TN
Sbjct: 127 -------NLNNHIGVPLTI---LSMTASDEMAVIEMGANHPGEIKDLTRIVLPDYGLITN 176

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L   K   A I  DD+    ++ +       +++ 
Sbjct: 177 VGKAHLEGFGSLEGVIRTKSELYDYLKEKKNGTAFINFDDS----ILMKQAEGISHLITY 232

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEG-------KDFDFLFPLPGEFQVYNALVAAGLCI 323
           G          VC   +   +T+S+E                L G++ + N L A  + +
Sbjct: 233 GTSES----TSVCGKIDDSSLTLSLEWYKPTLSNNIQRINTQLIGDYNLSNILAAITIGV 288

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +    + E LE+      R +F  T S    I   Y     S+   L N   + +  
Sbjct: 289 FFKVPIEDIKEALEQYTPQNNRSQFKKTESN-QLIIDAYNANPTSMLAALNNFCNLKAEH 347

Query: 384 IIVVFGCGGDRDQGKRPIMGKI 405
            +V+ G   +  +       KI
Sbjct: 348 KMVILGDMRELGKDSLLEHQKI 369


>gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
 gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
          Length = 449

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 162/457 (35%), Gaps = 42/457 (9%)

Query: 19  SIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           ++F ++  ++  I+ +  DSR +    +FV + G + DGH F  QA  +GA A   S   
Sbjct: 10  ALFGVECADQTMISSIEFDSRLVTTDSLFVPLAGTR-DGHEFAQQAQEKGAIAAFWSHP- 67

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                +        I+ V +T       A     K    ++A+TG++GK++    V  + 
Sbjct: 68  -----TIQPPEGLMIIEVSDTLAAFQKLAKFYKEKLAPKVIAITGSNGKTTTKDMVDAVV 122

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +   +    G  +                  L      +   G+ H         L Q 
Sbjct: 123 AQQFKTYKTQGNHNNEIGLPLTILHAPADTEVL------VLEMGMDHAGEIEVLSHLAQ- 175

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                     + T +G  HI+   +++    AKM +   L P     +I AD+     + 
Sbjct: 176 ------PDVAAITLIGEAHIENLGSREGIAKAKMEITAGLDPA-GFFMIPADEPL---LT 225

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                   +V + G     +          +   T++    D  +  P+ G + V NAL+
Sbjct: 226 PYLAELTQQVETFGLGEGNLKGTIQEETQEQTAFTVA----DQVYTIPVIGGYNVKNALI 281

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A G+   +GI+   +   L    +   R +++   + G  I  D Y     ++ ++L + 
Sbjct: 282 AIGIGRYLGIEEEKIKAGLADFQLTKNRTQWLKA-ANGAAILSDVYNANPTAMGLVLDSF 340

Query: 377 RTIT-SGRIIVVFGCGGDRDQGKRPIMGKIA---LDLADIAIVTDDNPRSEDPEKIRAEI 432
           R +  +GR I V     +       +   +A    +  D+  +      SE     RA  
Sbjct: 341 RKLPLTGRRIAVLADMLELGPDSAKMHAGMADHLDERFDLIFLYG----SEMQALKRALD 396

Query: 433 IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +     F  K  +   I    + L   D +V+ G
Sbjct: 397 QSRLADRVHFFSKEEKAALITQLQKELQPTDSIVLKG 433


>gi|325912429|ref|ZP_08174824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
 gi|325475771|gb|EGC78942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
          Length = 455

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 167/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    +      A    N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDH------ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------ITILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + +       T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +  RA        + G+      +            + ++     
Sbjct: 214 DGKFIFNGDEPL---LQARAQKLNQLQATFGFNSTDT-IYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     + + +L +   +     GR I V G   +       +   +A  L    I  D
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLI--D 387

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +        K   E + G        + EK +    I    E +   D++++ G
Sbjct: 388 ELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLKEDIKPHDIVMLKG 441


>gi|312871545|ref|ZP_07731638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|311092940|gb|EFQ51291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
          Length = 455

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 167/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    +      A    N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDH------ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------ITILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + +       T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +  RA        + G+      +            + ++     
Sbjct: 214 DGKFIFNGDEPL---LQARAQKLNQLQATFGFNSTDT-IYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     + + +L +   +     GR I V G   +       +   +A  L    I  D
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLI--D 387

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +        K   E + G        + EK +    I    E +   D++++ G
Sbjct: 388 ELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVMLKG 441


>gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
 gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
          Length = 470

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 170/478 (35%), Gaps = 39/478 (8%)

Query: 1   MKLQDLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M  + L      +L + +   +         I  V+ DSR  + G +FV + G   DGHL
Sbjct: 1   MSARTLPALSLDQLASIVGARLVAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHL 60

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT----PILVVDNTRKFLSLFASRLYGKHP 114
           ++ +A  +GA A +V      +  SA ++        +LVV +T + L            
Sbjct: 61  YLGEAFQRGASAALVQETVFSEAGSALLKHVVQTRGALLVVTDTLEALQTLGEWYLSSLR 120

Query: 115 ENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             I + VTG+SGK+S    ++ +              +T  +   +  +           
Sbjct: 121 VPIRIGVTGSSGKTSTKEMLRAVLSL-----HYSRVWATEGNLNSEIGVP-------LSI 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L       V    +     G        +K      T +G  H++   T++     K ++
Sbjct: 169 LGIREEPEVVICEMGIDHVGEMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKI 228

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F       S   I  D+ +   +++     G R   + Y    +   +       + V +
Sbjct: 229 FSSF-DDRSVGFIPEDEEFFHVLVE-----GWRGTFLPYGPATVEGFEGWESRGLEGVIL 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S +G          GE  V NAL    L   +G+  ++V E L+    + GR E      
Sbjct: 283 SWKG--LRIPLQGYGEHMVRNALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGELKEIGG 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQ----GKRPIMGKIALD 408
               +   Y     S+   L+ +R +    R IVV G   +         R +   +A  
Sbjct: 341 VWFLV-DCYNANPESMRASLEGVRGLKGIRRRIVVLGSMRELGDAAPSEHRRLGDYLAGY 399

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            AD+ ++       E+ E   A ++ G  G        EA    + ++ + D++++ G
Sbjct: 400 PADVVLL-----VGEEMEAAFA-VLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKG 451


>gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus bromii L2-63]
          Length = 450

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 152/465 (32%), Gaps = 37/465 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++D    +  +  N   +     +  KI  V  DSR ++ G +F+AI G + DGH FI +
Sbjct: 1   MKDFTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFIEK 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             AQGA   +   A           +  P +VV +T   +         K    ++ ++G
Sbjct: 61  CFAQGAVCALCEKAPE--------NATKPCIVVPSTLDAVKKIGRAYREKFDIPVIGISG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +   +    G  +                               
Sbjct: 113 SVGKTSTKEMLYAVLSQKFKTHKTQGNLNNELGVPLTLLSMPEDT-------------EA 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G      + ++      T +G  H++    +     AK  +F+    + +
Sbjct: 160 AVIEMGISDFGEMTRLSEMVQPTICVLTIIGECHLENLGDRDGVLKAKTEMFKN-ARENA 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+  DD     V K  +        +  +  F       +   K   T+  +  + D 
Sbjct: 219 DFILNGDDDKLSTV-KTVNGKKPVFFGLDAKNDFYAKNIKNSGDGKVLATLCFDNNNIDV 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             P  G + V NAL AA     +G+    +   +     V  R   + T     +I  D 
Sbjct: 278 EIPAIGTYMVTNALAAAAAGKLLGLTDEEIANGVASYKTVGSRANVINTGK--IKIIDDC 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y     S+   L  +  +  GR + + G   +    +  +     +      I T     
Sbjct: 336 YNANPTSVRASLDTLSNL-DGRKVAILGDMKELGSEELKLHFDTGVYAKSKGIGTVI--- 391

Query: 422 SEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++  E+  G  G  F    +    I   I      DV++V
Sbjct: 392 --TVGELAKELAKGADGKAFDTIEDAKPEILKTI---KSGDVVLV 431


>gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
 gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
          Length = 456

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 177/476 (37%), Gaps = 52/476 (10%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L   +   L+   +    Q+ +  + +   DSR I  G +FV + G + DGH FI  A 
Sbjct: 2   NLTLHEVAHLVRAKNDI-SQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIETAF 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A           FS  +    P ++V++        A+    K   ++ AVTG++
Sbjct: 60  ENGAVAT----------FSEKVVEGHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSN 109

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + Q+   + L+    G  +                  L              
Sbjct: 110 GKTTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKL-------------- 155

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           V      H  D H L  +    A   T +G  H+++ + +      K+++ +  +P+   
Sbjct: 156 VLEMGQDHLGDIHLLSELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADG-MPEGGL 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++ AD      ++        +V+  G       +     I  K  +T      +    
Sbjct: 215 LVVPADP-----IVNAYLPEKQKVVRFG---PDEEIFITELIERKDSLTFRANFLEEAID 266

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+ G++   NA++AA + +  G+  A + +  E L +   R E+      G  I  D Y
Sbjct: 267 LPVTGKYNATNAMIAAYVALQEGVSEAAIRDSFETLQLTRNRTEW-KKAGNGADILSDVY 325

Query: 363 AHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIV 415
                ++ +IL+   TI    +GR + V     +  +    +  ++ L L+    D  I 
Sbjct: 326 NANPTAMRLILETFSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIF 385

Query: 416 TDDNPRSEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +       ++ +++     ++      E+    + ++   E L +QD +++ G
Sbjct: 386 YGQDIAG--LAQLASQMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKG 439


>gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 492

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 142/458 (31%), Gaps = 80/458 (17%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++                     R+++ V+ DSR     ++FV I G + DGH FI
Sbjct: 4   MSLQEITTA-----CGGTYYGEPSLLTREVSGVAIDSRKAGKDFLFVPIKGARVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + QGA   +     S          ++P ++V +  + L   A          ++ +
Sbjct: 59  PQVMEQGALCTLSEHPLS---------DSSPYILVSSCAQALKDIAEHYRRALGIKVVGI 109

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           +G+ GK+S    +  I        + +G  + +IG   T+                    
Sbjct: 110 SGSVGKTSTKEMIASILEQKYSVLKTAGNFNNEIGLPLTV-------------------- 149

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V  + +  S            +      TN+G+ H++    +     AK  +
Sbjct: 150 FQIQKEHEVAVLEMGISDFQEMNRLAKIAQPDICVLTNIGQCHLENLGDRDGVRKAKTEM 209

Query: 234 FEELLPKESPAIIYADDAYSKEVM--------------------------------KRAH 261
           F       +  I+  DD    E+                                  ++ 
Sbjct: 210 FAHR-RSGASIILNGDDDKLSEIATVHAASFSKQDGTTVVPYSDSTHDETSAASAVDKSG 268

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +             F   +            I     DF  +  +PG   VYNAL    +
Sbjct: 269 DTTPIFFGKDPHNAFYADEIQSLGLKGTSCKIHTPAGDFTVIISIPGAHMVYNALAGIAV 328

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            I +G+    +   +E L  V GR   + T      I  D Y     S++  L  + T  
Sbjct: 329 GIELGLTLDEIKTGIEALQPVAGRNHMIETEHL--TILDDCYNANPVSMKASLDVLSTAL 386

Query: 381 SGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + ++ +   +F  G       R +    A    D+   
Sbjct: 387 TRKVAILGDMFELGTKELLLHREVGTYAAEKKLDLLCC 424


>gi|309803741|ref|ZP_07697827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164150|gb|EFO66411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 455

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 167/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    +      A    N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDH------ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------ITILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + +       T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +  RA        + G+      +            + ++     
Sbjct: 214 DGKFIFNGDEPL---LQARAQKLNQLQATFGFNSTDT-IYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     + + +L +   +     GR I V G   +       +   +A  L    I  D
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLI--D 387

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +        K   E + G        + EK +    I    E +   D++++ G
Sbjct: 388 ELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVMLKG 441


>gi|255022984|ref|ZP_05294970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J1-208]
          Length = 418

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 157/434 (36%), Gaps = 43/434 (9%)

Query: 44  WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
            +FV  VGN  DGH F+ QA   GA A                 ++ P+++V++T   L 
Sbjct: 1   DLFVPFVGNVRDGHEFVNQAREMGAVATFWQKDVP------NPPTDFPVILVEDTLLALQ 54

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A++   +    ++A+TG++GK++    +  I + +    +  G  +            
Sbjct: 55  ELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTM 114

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                             V  + +  +     +      K      TN+G  HI+Y  ++
Sbjct: 115 PEDT-------------EVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 161

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKV 282
           +    AK+ +   L P            + + ++    N   R L+ G  +   I+  ++
Sbjct: 162 EEIAKAKLEITAGLNPSGILIY-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEI 216

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            A         + E  + +   P+ GE  V+N + A      IGI+   +   L+ +   
Sbjct: 217 RAEAEGTCFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERS 275

Query: 343 PGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKR 399
             R E++ T S G RI  D Y  +  +L+ +LK    +  +     +V     +      
Sbjct: 276 KSRLEWITTKS-GARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLST 334

Query: 400 PIMGKIAL----DLADIAIVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA- 452
            +  + A     D  +   +  D      E  E    +      G +   +  E++ TA 
Sbjct: 335 KLHQESAEVLESDTIEKVFLYGDAMKAFGEVAEAKIGQ------GKVHHFDTKESLETAL 388

Query: 453 IEMLNKQDVLVVAG 466
           +  +   + ++V G
Sbjct: 389 LSEIKGNEWILVKG 402


>gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
 gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
          Length = 453

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 151/405 (37%), Gaps = 24/405 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   + ++  V +DSR    G +FVA+ G   D H F+   +AQGA   +V 
Sbjct: 7   VAQLAGGRLAGADAEVTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQGAAGALVR 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             ++L            ++ VD+TR  L   A+    +    ++ +TG++GK++V   + 
Sbjct: 67  QDFAL--------PGVALVQVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVKEMLT 118

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I          +      ++                  L   +      + +  +  G 
Sbjct: 119 AILAAHAGRDTVLATAGNFNN----------DIGLPLTLLGLNAGHRYAVIEMGMNHFGE 168

Query: 195 DQHRLDGIKLIAGSFTNLGRDHI-DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            ++     +       N  R H+            AK  +FE L  ++  A+I ADD ++
Sbjct: 169 IRYLTGLARPRVALVNNALRAHLGGGFSGTADIARAKSEIFEGL-AEDGVAVINADDPHA 227

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              + RA  AG R+LS G     ++ + V          +     D     P PGE  V 
Sbjct: 228 A--IFRAAAAGRRLLSFGLGEADVNARDVTLSDTAAHFVLCSPQGDVAVALPAPGEHNVR 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA   +A+ +  A +   L     V GR +     +    I   Y    +S++  +
Sbjct: 286 NALAAAAAALALEVPLAAIAAGLAGFAGVRGRLQRKHAGNGATLIDDTYNANPDSMKAGI 345

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVT 416
             +    + R  V+   G   +        +G  A +    A++T
Sbjct: 346 DVLLQALAPRWFVMGDIGELGENAAALHAEVGAYARERGLDALLT 390


>gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 487

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/501 (18%), Positives = 174/501 (34%), Gaps = 71/501 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +     +D   ++       +   +  I  +S DSR ++   +FV I+G   D H F+
Sbjct: 1   MSMDGFTCRDL--VLATGGTLLLGKEDTPIRHISLDSRKMEGDDLFVPIIGENVDAHGFL 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIR----SNTP---------ILVVDNTRKFLSLFAS 107
            QAI  GA A+  S     ++  A I      + P          + V +T+K L  F  
Sbjct: 59  CQAIVNGAAAVFTSRHRQPEEVRADIIRQCGDDVPRMEAAMSAAWIEVADTKKALQDFGI 118

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDN 160
               +    ++ +TG+ GK++    +           +  G S+ Q+G   TI++     
Sbjct: 119 YCRSRQKLPLVGITGSVGKTTTREMIAAALSAGFTVYKTPGNSNSQVGVPITIAAIP--- 175

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                                +  + +  S  G         ++     TN+G  HI+  
Sbjct: 176 -----------------KQAQIGVIELGMSEPGEMTRIARIARVDCAVMTNIGVTHIEQL 218

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +Q      K+ + +  + +    I+  DD   + V+   +    R +  G      +  
Sbjct: 219 GSQDNILKEKLHIQDG-MAENGSLILNGDDRLLRSVIPEGNR---RKILYGMSDDCQYRG 274

Query: 281 KVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +   + N     +   E K       + G   V NAL A  +    GI        LE+ 
Sbjct: 275 EDLHLVNGYPVFSAVHENKRVTVRLRVMGSHMVSNALAALAVAHEYGIPMEAAAAKLEEF 334

Query: 340 HVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS---GRIIVVF----GCG 391
               GR +       G  +  D Y  +  S++  L+ + ++     GR I V       G
Sbjct: 335 EGFKGRQQIFTLKG-GITVIDDSYNASPVSMKAGLEVLGSMEPEGTGRRIAVLADMKELG 393

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRI 446
            D  +  R I   IA+   D  ++            + AEI HG+     P  +     +
Sbjct: 394 PDAPRFHREIGEYIAVHPVDQVVL---------LGGLAAEIGHGLCASSSPVPVVFCEEL 444

Query: 447 EAI-RTAIEMLNKQDVLVVAG 466
           E + +     L + D ++  G
Sbjct: 445 EQVGQWLNGNLKQGDCVLFKG 465


>gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
 gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
          Length = 459

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 162/437 (37%), Gaps = 29/437 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I+   IF+A+ G + +G+ +   A  +GA   +V   +  ++    I+  T +
Sbjct: 29  ISTDTRKIEEKAIFIALKGERFNGNEYTASASQKGAFICIVDEVHFKKE---EIKDYTTV 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A     K    ++A+TG++GK+S       +         +     T
Sbjct: 86  IKVKDTSEALLDLAKYYKSKLEVKVVAITGSTGKTSTKDLTASVL------GAKYKVFKT 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F                      +  +  + +  S+ G                TN+
Sbjct: 140 EGNF-------NNEIGLPLMIFKLDKTYDIAVLEMGMSNFGEIHKMAKTALPDIAIITNI 192

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI+  +++     AK+ + +    +++  I+  +D    +++        +++  G 
Sbjct: 193 GISHIENLKSRDNILKAKLEIID-FFGEDNILIVNGED----DLLGNLKEEKYKLIKTGL 247

Query: 273 -QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +   I+   +          I  +G +     P+PG+  V N+L+A        +    
Sbjct: 248 GKNHNIYAYDINLNEKSVSFKIFEDGDELQIDIPVPGKHNVLNSLLAIACGRIFKMSFEE 307

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVF-- 388
           +   +  L     R + V    +   I  D Y  + +S++  ++ +  I S R   V   
Sbjct: 308 IKNGILDLQTTSMRLDMV--EGKKFNIVDDSYNASPDSMKAAIEVLCNIKSKRKFAVLGT 365

Query: 389 --GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
               G +  +  R I         ++ ++   +    +     +E  +     +E  ++ 
Sbjct: 366 MKELGEEAYRAHREIGKYAGEKSVNLIVLGSFSKAYIEGYLEGSENKNNRGNILEAKDKE 425

Query: 447 EAIRTAIEMLNKQDVLV 463
           E I      LN +DV++
Sbjct: 426 EVINYLDINLNSEDVVL 442


>gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
 gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
          Length = 473

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 160/473 (33%), Gaps = 50/473 (10%)

Query: 1   MKLQDLIYKDFPELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           M+L      D  E++  L       +      +  V +DSR    G +FV I G + DGH
Sbjct: 1   MRL------DLAEIVRCLGCARDVKVADGSVTVTSVVTDSREAVPGSLFVCIAGERVDGH 54

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            +  +A+ QGA A++ +              + P+L+V +T + L   A+   GK    +
Sbjct: 55  DYAARAVEQGAVAVLAARPLEGL--------SVPVLLVQDTVRALGAVAALWRGKSSARV 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++V   +  +  R G +             A +              L   
Sbjct: 107 VGITGSAGKTTVKELLAHVLSRRGKT-------------ACNALNLNNQVGMPLCMLKTD 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +         S  G        ++       N+G  H +    +      K RL   L
Sbjct: 154 GDEDFWVFEAGISHEGDMDELGAILQPDLALILNVGAAHTEGLGER-GVAWHKSRLLAHL 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTIS 294
            P E  A++ AD     ++++ A      VL     G+   +      C+     Q  + 
Sbjct: 213 AP-EGQALVSAD---YDDLVREARAVFGDVLFFTASGRPLSYRAAYAGCSDGVHGQYRLW 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++G+  D + P  G++   N +  A     +G+ +  +        + P RF        
Sbjct: 269 LDGRPCDVIAPFRGDYGTENCIAVAAAAHMLGLTAEEIAAGFADAQLPPQRFAR-SRRGN 327

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-----GGDRDQGKRPIMGKIALDL 409
              +   Y     S+  +L         R  VV        GG  D+    +   +A   
Sbjct: 328 WDIVDDTYNANPLSMARMLDAAAESAQKRPFVVVLGEMRELGGVADREHERLGRHLAQLR 387

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDV 461
             +        R    + +R  + HG+  G     +  EA   A+      D 
Sbjct: 388 PVLVFW-----RGGHADAVRDGLEHGLYTGKFLPVDSGEAFVQALREHLPADT 435


>gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
 gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
          Length = 486

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 161/455 (35%), Gaps = 49/455 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V  DSR ++ G +FVA+ G   DGH FI             + A            + 
Sbjct: 44  SGVEMDSRDVRPGDVFVALKGEAMDGHKFIA-----------AAFAKGAVAAITDRPVDF 92

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P ++V +T K L   A     +     +AVTG+ GK+ V   +     R+          
Sbjct: 93  PHVLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGVKEAIFASLDRASR-------- 144

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                 A  +  +  + + +  +L+ + +        +  +  G      D ++      
Sbjct: 145 ----GAAHRSVRSYNNHVGVPLSLARMPARAKFGVFEMGMNHAGEIAPLSDHVRPHVALI 200

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   HI+   + +A  + K ++F  L+     AII AD  Y+  ++  A   G  V++
Sbjct: 201 TTIAPAHIENLGSMEAIADEKAQIFTGLV-TGGTAIIPADSEYAGRMIGHAKALGVNVVT 259

Query: 270 VGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G         L  + +      VT  +      +    PGE  + N+L       A G 
Sbjct: 260 FGRSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGVIAAVRAAGG 319

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384
           D A     L ++  + GR       + GG+  +    Y     S+   L+ +    + R 
Sbjct: 320 DLASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRALGQTPAHRR 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVTDDNPRSEDPEKIRAEI-------I 433
           + V G   +          +IA        D  I+  D  R      +  E+       +
Sbjct: 380 VAVLGSMKELGDFAPRFHAQIAEPLTEAKIDHVILVGDEMR-----ALAGELGRMPANSL 434

Query: 434 HGIPGFIEKGNRIEAIRTAIEM--LNKQDVLVVAG 466
              P F +  +  EAI  A+E   L   D ++V G
Sbjct: 435 GFAPSFAQCDSPAEAI-AALEEYGLTHGDAVLVKG 468


>gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
 gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
          Length = 457

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 145/398 (36%), Gaps = 35/398 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P+++   ++     +      + +D+R +Q G +F+A+ G   DGH F+ +A+ QGA A
Sbjct: 23  LPQILAATAVHLDAGQGLTAQGICTDTRGLQPGEVFLALRGANFDGHQFVQRAMEQGAIA 82

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +             +  + P LVV +T                  ++AVTG+ GK++  
Sbjct: 83  AITDQ---------VLPGDFPQLVVKDTLVAYQTLGRWWRDTFQIPVIAVTGSVGKTTTK 133

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +           G   ++     +       P  L   L   +      + +   
Sbjct: 134 ELIAAVL----------GLQGSVLKTEANYNNEIGVPKTL---LQLTTDHAYAVIEMGMR 180

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G         +      TN+G  HI    +++A   AK  L  E +P  S A++ AD+
Sbjct: 181 GLGEIASLTRIARPDIAVITNVGTAHIGRLGSREAIAQAKCELLAE-MPTTSVAVLNADN 239

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               E      +   + LS G     +         + Q   + VEG+ F    PLPG+ 
Sbjct: 240 PLLIETATEVWSG--KTLSYGLTAGDLR-------GHLQGDMLEVEGQCFP--LPLPGQH 288

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  +   +G+D   +L+ L ++++  GR +          +   Y     S+E
Sbjct: 289 NALNYLAALAVAKLLGLDWKPLLQGL-QVNLPEGRAKSHRLGEDVVLLDETYNAGPESME 347

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             L+ +      R + V G   +       +  +I   
Sbjct: 348 AALRLLAQTPGKRRLAVLGPMRELGDYALELHYQIGQK 385


>gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
 gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
          Length = 458

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 169/476 (35%), Gaps = 39/476 (8%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+ DL   D   L    Q +   +   ++++  V +DSR + AG  FV + G + DGH 
Sbjct: 1   MKVLDLA--DLVSLWGPPQQADGAVPNLQQRLGPVCTDSRLLTAGAFFVPLRGERFDGHR 58

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F+  A  QG +A VV+    +      +  +    +VD+T +     A  +       ++
Sbjct: 59  FLASATEQGIQAAVVARDSDIP-----VPQSLLHWIVDDTLEAYQQMACLVRRNLNSAVV 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GK++    ++      G     IG                         L    
Sbjct: 114 AITGSAGKTTTRELIRAALAPLGAVQASIG-------------NNNNDVGVPLTLLGVDE 160

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 V +     G  +      +      TN+G  HI    +++A   AK  +   L 
Sbjct: 161 QHAAVVVEMGMRGPGEIERLSRCAEPEIAVITNIGTAHIGRLGSREAIAAAKCEITAALS 220

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           P +   +I A D      + +  +   R ++ V       H+      +N     IS+  
Sbjct: 221 P-DGLVVIPAGDPLLDAALAQCWSGRVRRVALVDDANDSEHVADDLGDYNPLTGRISLGN 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             ++   PL G     N ++A  +   +G+  A +++   ++     R   +G+      
Sbjct: 280 DSYNC--PLEGRHNARNFMLAIAVARTLGVAPADLVQLKVEVPGGRNRKRQIGS----LT 333

Query: 358 IYV-DYAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIA 413
           I    Y  +  ++   L  +      R  V   +   G D     R ++   A    D  
Sbjct: 334 ILDETYNASPEAVFAALDLLAAQPGRRFAVLGTMLELGTDSVGLHRAVIDHAATLNLDGL 393

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           +V      +    K  ++     P F +     +A    IE L   D +++ A +G
Sbjct: 394 VVV----ATGAEAKAMSDASSRWPQFQQVETPEQAAEPLIEWLRPGDTVLLKASRG 445


>gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
 gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
          Length = 470

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/422 (20%), Positives = 151/422 (35%), Gaps = 32/422 (7%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
                 Q+    +   +  +   VS+DSR    G +F+AI G++ D H F+PQ   +   
Sbjct: 6   LRAAAAQIPGASVTGDDSVRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVA 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++V+              N P + V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AVLVARTPE--------NWNVPAIRVADTRAALGALARGWRRQFEMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +  +  ++      ++            I L   L  L +     V    
Sbjct: 118 KEMIASIFAAAVGADARLATAGNFNN-----------DIGLPLTLFRLHAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  +         N  R+H ++  T +A       +   L P+   A+  A
Sbjct: 167 MNHPGETELLAKLAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQ-GTAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDAY+     R    G R++           +  V    + ++++I       D    + 
Sbjct: 226 DDAYASIW--RVAATGNRIIDFALNSAERTTEAAVKGTFDGKRLSIDTPQGRVDVTLQVL 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YA 363
           G    +NAL A    +A G+    +   LE    V GR +          G  +  D Y 
Sbjct: 284 GNHNAHNALAATSAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGTLAGATVIDDTYN 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNP 420
              +S+   +  + +  S R++V+   G   D G    R I         D      D  
Sbjct: 344 ANPDSMRAAIDVLASRASPRVLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDAS 403

Query: 421 RS 422
           R 
Sbjct: 404 RD 405


>gi|312872550|ref|ZP_07732618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091912|gb|EFQ50288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 455

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 167/474 (35%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    +      A    N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDH------ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------ITILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + +       T +G  HI++  T+    +AKM +  + L +
Sbjct: 155 EILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEI-TDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +  RA        + G+      +            + ++     
Sbjct: 214 DGKFIFNGDEPL---LQARAQKLNQLQATFGFNSTDT-IYATNFNSYMHHASFAINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     + + +L +   +     GR I V G   +       +   +A  L    I  D
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLI--D 387

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +        K   E + G        + EK +    I    E +   D++++ G
Sbjct: 388 ELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLKEDIKPHDIVMLKG 441


>gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
 gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
          Length = 477

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 165/471 (35%), Gaps = 65/471 (13%)

Query: 11  FPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E++  +  +  +      I  V +DSR ++   +FV ++G  +DGH ++PQAI +GA 
Sbjct: 10  LEEILEAVNGVHVLGNSPLCIKSVQTDSRLVEKNTLFVPLIGENQDGHSYVPQAIEKGAS 69

Query: 70  AIVVSSAYSLQDFS--ATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENI-LAVTGT 123
            + +S      + +    +    P    + V+NT + L   A+R   K P  I + VTG+
Sbjct: 70  VVFISMKNFENNGNYFVELHEKNPSVIFIAVENTLEALQKSAARYVEKFPHLIKIGVTGS 129

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++    +  I  +       I     ++S                   +  +     
Sbjct: 130 SGKTTTKEILVSILSQ---KYKVISNKGNLNS----------ETGLPLSVFNIRAEHECG 176

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +  +           +K      TN+G  HI    +++     K ++F         
Sbjct: 177 VFEMGMNRENEIGEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIFSYF-GGFGT 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +I  DD +S  +               + G      K       +    S++G   + +
Sbjct: 236 GVIPVDDEFSDFLKNEIDGKVV------FYGNDTDSVKYICDMGLKGTKFSIDG--IETI 287

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDY 362
            PLPG++   +AL A  L   +G+ S  + + +  L  + GR E +  + +   I    Y
Sbjct: 288 LPLPGKYNYKDALGAIALAQVLGLSSRQISDGISSLKPLSGRSEIL--DGKNFLIMQDCY 345

Query: 363 AHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGK----IALDLADIAIV 415
               +S+E  ++ I ++      + I V G   +     +    K          D+ I 
Sbjct: 346 NANPDSMEKAIEFIGSVKKEADAKKIFVLGDMLELGSDSKSAHEKTGLLAVNSDVDLVIF 405

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                       I  E+               A + A     K  ++ +AG
Sbjct: 406 ------------IGTEM-------------KAAFKKAKNSSEKN-IIFIAG 430


>gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 448

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 147/399 (36%), Gaps = 35/399 (8%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +   S +S++I    +F+ + G++ DGH F+ +A+  GA + +    +        
Sbjct: 21  SDVLVKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEALQNGAISFISQKDFE------- 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                P + V ++   L   A     K  +  ++ VTG+ GK+S   ++  +  R   + 
Sbjct: 74  -DIKVPYIKVQDSLLALQSLACYARRKLNDLKVVGVTGSVGKTSTKEYIFNVLSRKYKAF 132

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +                              V    +  S+ G         K 
Sbjct: 133 KNQGNFNNHIGLPISILNMPDDTQ-------------VAVFEMGMSNFGEISKLSQIAKP 179

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  HI+  +++   F AK  + +  +P+    II +D+       K      
Sbjct: 180 DIGIITNIGVAHIENLKSRYNIFLAKSEIQDG-MPESGILIINSDNDILNLHKKELKR-- 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +V+++G + +     +    H       S E   + +         +YN+L A  +   
Sbjct: 237 -KVVTIGIENESNFRAQNVQRHQNG---FSFEVGGYTYFIESFNFHDIYNSLFAIAVGTI 292

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           + +D  LV E + +   +  RFE +   S    +  D Y  +++S+   + +I      +
Sbjct: 293 LEVDRQLVKEAIRQKERLKRRFEVIKKGS--ITVVDDTYNASTHSMLSAIDSICEFEGKK 350

Query: 384 IIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           I+V   +   G   ++  R +   I     D+ I T  +
Sbjct: 351 ILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKD 389


>gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
 gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
          Length = 466

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 143/373 (38%), Gaps = 22/373 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +    V +DSR ++ G +FVA+ G + D H FI   +A+GA A++VS           + 
Sbjct: 27  QAFARVHTDSRTVEPGDLFVALKGERFDAHDFIADVVARGAVAVLVSRD---------VD 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  P +V  +TR  L    +    +     +AVTG++GK++V   +  I   +     ++
Sbjct: 78  AGVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRL 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +++                  L   ++  +  + +  +  G   +     +    
Sbjct: 138 ATGGNLNN----------DIGLPLTVLRLRATHRLAVLELGMNHPGETVYLAGIAQPTVA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGC 265
             TN  R+H ++  + +A  +         LP +  A+   D+    +     RA     
Sbjct: 188 VVTNAQREHQEFMVSVEAVAHEHAAA-IAALPADGVAVFPLDEESGGQHAAIWRAAAGTR 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           RVLS G  G+      V  +   Q + +   G  F+    L G   V NAL A    +A 
Sbjct: 247 RVLSFGTAGEADVQATVALVDGVQVMQVRAPGHAFEVHLGLLGTHNVRNALAATACALAA 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    + + L     V GR +   T      I   Y    +S+   +  +    + R++
Sbjct: 307 GVQVPAIQQGLAAFKAVKGRLQVKHTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAPRLL 366

Query: 386 VVFGCGGDRDQGK 398
           V+   G   DQG 
Sbjct: 367 VIGDMGEVGDQGP 379


>gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
 gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
          Length = 452

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 151/420 (35%), Gaps = 45/420 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+ + +        + +  IN +  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKLT------LQEIASVVGAQNDVSLFEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A A GA A               I S+ P ++V +  K     A     K   +++
Sbjct: 54  FIDTAFANGAVATFSEK---------NITSDYPYILVVDCLKAFQDLAQYYLEKMRVDVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G  +                  +      + 
Sbjct: 105 AVTGSNGKTTTKDMIATILATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKI------VL 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  H+   A    L               T +G  H+++  +++     KM++  + +
Sbjct: 159 EMGQDHLGDIALLSNL-------THPHIAVVTLIGEAHLEFFGSREKIAEGKMQI-TQGM 210

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I  AD     +++        +V+  G       +       +K  +       
Sbjct: 211 DGHGILIAPAD-----KIINSFLPEKQKVIRFG---ADEDIFVTELEEHKNYLNFKTNFL 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D +   P+ G++   NA++A+ +   + +    ++  L +L++   R E+    + G  I
Sbjct: 263 DNEIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNLTRNRTEW-KKAANGADI 321

Query: 359 YVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y     ++++IL+   +I     G+ I V     +    +  +   +   L    I
Sbjct: 322 LSDVYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELGDSELALHAAMIASLDPAVI 381


>gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 453

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 142/375 (37%), Gaps = 30/375 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +V++DSR I    +F+A+ G + D H F   A+  GA AI+V+    L         N
Sbjct: 24  IEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNAVLAGASAILVNRQLPL---------N 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V++T   L   +  +  +    ++A+TG+SGK+SV      I ++ G      G 
Sbjct: 75  IPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSGKTSVKEMTASILRQCGKVLATQGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +     +      TP   +    L      G  H+   +S+  L       +       
Sbjct: 135 LNNDIGVSLTLLRLTPQDDFAIIEL------GANHIGEISSNANL-------VLPEIALV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268
            N+   H+    +      AK  +F +L P     I+      S + +     + C+ V 
Sbjct: 182 NNISFSHLAGFGSLAGVAQAKGEIFTKL-PGNGLVILN---ENSNDWLNWQQGSKCKTVW 237

Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                          K+ +  +    T+           P+ G+  + NAL A+ L IA+
Sbjct: 238 RFSLNKTDNVQFFATKIVSNLHSMYFTLHSPQGSCQVQLPMLGKHNITNALAASALAIAV 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G + + V   L K+  +PGR   +  +     I   Y    NS+    + +  +    ++
Sbjct: 298 GANLSAVSLGLSKVKPIPGRLCPIQLDVGKLLIDDSYNANVNSMIAAAQVLSEMPGYLVM 357

Query: 386 VVFGCGGDRDQGKRP 400
           VV       ++  + 
Sbjct: 358 VVGDMAELGEKEIKY 372


>gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 461

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 151/430 (35%), Gaps = 55/430 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +          +  +N++  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLT------LHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A     A           S  P ++V+N        A     K   +++
Sbjct: 54  FIDLAFENGAVATFSERAI----------SGRPYILVENCLAAFQKLAQYYIDKLRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK+S    ++ +  ++           T  ++  D        I L   + ++ 
Sbjct: 104 AVTGSNGKTSTKDMIEAVLAKA------YKTYKTQGNYNND--------IGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D   L  I +      T +G  H+ Y  +++     KM++ +  
Sbjct: 150 EDTEKIVLEMGQDHMGDIQLLSRIARPHIAVLTLIGEAHLAYFGSREKIAEGKMQIVDG- 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      I   D      ++         V+  G       L        K  +T     
Sbjct: 209 MDSNGILIAPGDP-----ILDPYLPDSQMVIRFG---DHQELVVEDIKECKDSLTFRTNV 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PL G++   NA++AA +   + +    ++E LE + +   R E++   +    
Sbjct: 261 LPRPVTIPLTGKYNATNAMIAAYVGKLLAVPDEDIIEALEAVKLTRHRTEWLKAANGADL 320

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +   Y     ++ +IL+    I    +G+ I V     +       +  ++         
Sbjct: 321 LADVYNANPTAMRLILETFAAIPANPNGKKIAVLADMKELGADSVALHSQM--------- 371

Query: 415 VTDDNPRSED 424
           +T  +P+  D
Sbjct: 372 ITSLDPKRID 381


>gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
 gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
          Length = 481

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 135/395 (34%), Gaps = 30/395 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--- 88
            V +DSR ++ G IFV + G   DGH ++ QA   GA  I+V+         A   +   
Sbjct: 33  NVVTDSRDVKKGCIFVCLKGEFHDGHDYVRQAAEDGAGIIIVNEDKKADVMKAIDDARAM 92

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           NT ++ V      +   A           + +TG+ GK++V   V  +   +  +    G
Sbjct: 93  NTSVISVKAPLYAMGELAKWYISYLGVKTIGITGSVGKTTVKDMVASVLPSAMNTYKTKG 152

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +++                    L                + G      + I      
Sbjct: 153 NFNSLIGLPLTALSMPRDTSLCVFEL-------------GMDAKGEIDRLSEIIAPDVAI 199

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G  H++   +++  F AK  +   + P     +I   D   + + K        V+
Sbjct: 200 ITKIGVSHVERLGSRENIFRAKSEIVNHIKP--GGTLILGVDEDEQYLKKENFTGNFNVI 257

Query: 269 SV------GYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGL 321
            V      G       ++ V       +   S  G +         G     NA +A   
Sbjct: 258 EVTAKHYAGVDSNTYCVENVRDDMEGIRFEFSGGGYEKIPVTINTHGIHNALNAGLAIAC 317

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT--SNSLEMILKNIRTI 379
            +   ID   + E L+ ++    R E      +GG  ++D ++     S+   L+ +  I
Sbjct: 318 GLQFDIDLESIKEGLKNVNFTAKRLEI---KEKGGITFIDDSYNASPESMSSALRVLSQI 374

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           + GR++ V G   +  +       +I   + D+ I
Sbjct: 375 SKGRMVAVLGDMNELGKDSEDFHKRIGRLVFDLGI 409


>gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
 gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
          Length = 460

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 158/406 (38%), Gaps = 34/406 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L ++      EL ++       +    I  VS+DSR IQ G +++ +VG   DG LFI +
Sbjct: 6   LGEISRMLKAELCDK------AYDSHMIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKE 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVT 121
              + A A ++   Y +++  +      P + VD+T K L   A     +     I+ +T
Sbjct: 60  CEDKKAAAFLIDKDYKIKNNIS-----IPYIRVDDTLKALQALAKAYRNELSSTKIIGIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    + ++ ++      +     TI +   +  +           LS      
Sbjct: 115 GSNGKTTTKDLLYEVLKK------KFNVQKTIGNLNNEIGVP-------KTILSLREDCE 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  V +   S G        +K      TN+G  H++  +T++    AKM + E L P E
Sbjct: 162 VAIVEMGTDSFGDISLTTSIVKPDIALITNIGDSHLEKLKTKEGILKAKMEIVEGLNP-E 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I   DD   K+ +   +    + +S G       + K        +V+ S +G  ++
Sbjct: 221 GYFIYNGDDPTIKKDIS-LYTIKQKKISFGENDDNDFVVKDVGEKLA-KVSFSHDGDVYE 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G   VYN      +   +G+    + E L ++     R   +     G  +  D
Sbjct: 279 --IPLLGSHNVYNGGACLLISSLLGLSKEQIKEGLLEVTPANNRSRII--EFDGFDVLDD 334

Query: 362 -YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405
            Y     SL   L   + +      I+V G   +  + ++ +  ++
Sbjct: 335 CYKSNPQSLRSGLNTTKMLGGYDNKILVLGDMLELGESEKDLHYQV 380


>gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
 gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
          Length = 474

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 151/388 (38%), Gaps = 29/388 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +++D+R++    +FVA+ G   D HLF+  AI+ GA+A++V  A            +
Sbjct: 27  IDAIATDTRNLAEQALFVALKGENFDAHLFLDNAISTGAKALLVEQASD---------HD 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             ++VV +TR  L   ++ +  K    N +A+TG++GK++    +  + +          
Sbjct: 78  IAMIVVTDTRLALGALSAYVRDKIKGLNCIAITGSNGKTTCKELLSAVLRE--HCQDDSA 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +T  +F  +  +           L    +     + + A+  G   +    ++     
Sbjct: 136 LLATAGNFNNEIGVP-------LTLLRLTQNTRFAVLELGANHPGEINYTAQLVQPKVAL 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H++   +     ++K  ++  L   +  A++  D  +S+  + +    G  + 
Sbjct: 189 INNIMAAHLEGFGSLAGVASSKGEIWRHL-QADGTAVVNLDADFSQTYLSQLQAQGQCIF 247

Query: 269 SVGY---QGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQVYNALVAAGL 321
           +      Q  F         H      + V+             +PG+  V NAL  A +
Sbjct: 248 TFSQTLAQANFFADAIEFDAHGNANFILHVKTPICTGTQSISLKIPGQHNVSNALAVASM 307

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A+G     V + L +L  V GR   +  N     I   Y   S S++  +  +   ++
Sbjct: 308 AVALGCSLENVAKGLAQLPGVSGRVARIEVNDFLTIIDDTYNANSASVKAAINVLCATST 367

Query: 382 GRIIVVFGCGGDRDQG--KRPIMGKIAL 407
            + +++   G        +   +G+ A 
Sbjct: 368 KQALILSDMGELGTHTELEHQKVGEYAA 395


>gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 448

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 79/432 (18%), Positives = 159/432 (36%), Gaps = 56/432 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +   S +S+ I    +F+ + G++ DGH F+ +A+  GA + +    +         
Sbjct: 22  DVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDFVKEALQNGAISFISQKDFD-------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC-------Q 138
               P + V +T   L   A     K  +  ++ VTG+ GK+S   ++  +        +
Sbjct: 74  DLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGKTSTKEYIFNVLSLRYRAFK 133

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G  +  IG   +I +  +D +                    V    +  S+ G     
Sbjct: 134 NQGNFNNHIGLPISILNMPEDTQ--------------------VAVFEMGMSNFGEISKL 173

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K   G  TN+G  HI+  +++   F AK  + +  +P+    II  D+       K
Sbjct: 174 SQITKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDG-MPESGILIINNDNDILNLHKK 232

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                  +V+++G + +     +    H       S E  ++ +         +YN+L A
Sbjct: 233 EFKR---KVVTIGIENESNFRAQNVQKHQNG---FSFEVDNYTYFIKSFNFHDIYNSLFA 286

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
             +   + ID  L+ E + +   +  RFE +  N     +  D Y  +++S+   + +I 
Sbjct: 287 IAVGTILEIDRELIKEAIRQKERLKRRFEVI--NKGSITVVDDTYNASTHSMLSAIDSIC 344

Query: 378 TITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                +I+V   +   G   ++  R +   I     D+ I T  +        I  E   
Sbjct: 345 EFDGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDVVICTGKDAFY-----IFDEAKK 399

Query: 435 --GIPGFIEKGN 444
             G+  +    +
Sbjct: 400 KDGVKAYFVSKD 411


>gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 456

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 96/466 (20%), Positives = 159/466 (34%), Gaps = 47/466 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL   L    +   +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 7   FSELTVPLDARLVGG-DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKGAVG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSV 129
            +V              +  P LVV +TRK L+   A    G     + AVTG+SGK++V
Sbjct: 66  ALVEREVEG--------AALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G      G  +                      L          + + A
Sbjct: 118 KEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTAAVIELGA 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G   + +   K      TN G  H+           AK  + E  +     A++  +
Sbjct: 165 SRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPDRIVEAKGEILEG-VEASGTAVLNLE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D       KRA +      ++       +  ++          T+     +      L G
Sbjct: 224 DKAFPIWRKRAGHRNILTFALADAAADFYASELSRDARGCPSFTMDSPLGNVQVQLNLLG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA    A+G+    ++  L  +  V GR       S G R+  D Y     
Sbjct: 284 THNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRA-VAQIASNGVRVIDDTYNANPG 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +  +   T   ++V+   G      +QG   +    A  ++ +  V         
Sbjct: 343 SINAAVDILTGFTGRTVLVLGDIGELGEWAEQGHHDVGAYAAGKVSAMYAVGP------- 395

Query: 425 PEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                  + H +  F E      ++ E I       +    L++ G
Sbjct: 396 ------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|149923017|ref|ZP_01911435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
 gi|149816138|gb|EDM75648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
          Length = 437

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 115/411 (27%), Positives = 166/411 (40%), Gaps = 44/411 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-------RLTTPSPIYL 170
           + VTGT GK+S   F+     R+G        T   S    D            P P   
Sbjct: 18  VGVTGTDGKTSTTRFLAAAMARAGGGPTARVTTVDASILRCDPDGSAPLREHGGPPPENH 77

Query: 171 AKALSYL----SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L +L       G    ++EA+S  L            G FTNLG DH+  H + + Y
Sbjct: 78  RAFLRHLGQLRDEPGPRFAAIEATSTTLAIGFATAWPFRVGVFTNLGHDHLRAHGSYEHY 137

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMK---------------RAHNAGCRVLSVG 271
             +K +LF  L P    A++ ADD     V +               RA +    +    
Sbjct: 138 LASKAQLFLSL-PPGGFAVLNADDPTHALVAEVLPEGVQALWFAGPGRAEDRPVDLRLST 196

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPL--PGEFQVYNALVAAGLCIAIG 326
                    +  +    Q++ +      G        L     FQ  NA  A    +A+G
Sbjct: 197 LPSSPGEPPEPRSAWTGQRLRVDCSLPAGSALPSTLTLRALPRFQTENAAAALLAALALG 256

Query: 327 IDSALVLEHLEKLHVVPGRFEFVG-------TNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           + +A     + +     GRFE +          +R  R+ +DYAHT  +LE++L+  R +
Sbjct: 257 LPAAPAAAAIAECEPPVGRFELLALPELDAEARARLPRVVIDYAHTPEALELVLRCAREL 316

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR  VVFG GG  D  KR  +G +A  +AD   VT DNPR EDP  I  ++  GIP  
Sbjct: 317 HPGRCFVVFGAGGSADPSKRAPLG-LAASVADRIFVTTDNPRDEDPSDIARQVCAGIPAG 375

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
              + + +R +AI  AI      D+++VAGKGHE   I    E+    D D
Sbjct: 376 HPHVVELDRGQAIALAIAEAQPGDLVIVAGKGHERDQI-RGKERTPFSDHD 425


>gi|303236845|ref|ZP_07323424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
 gi|302483013|gb|EFL46029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
          Length = 433

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 149/418 (35%), Gaps = 35/418 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF+A+ G   +G+ F   A+ +G    ++      ++       N  +
Sbjct: 16  ITTDSRECPQGSIFIALKGASFNGNKFAKMALEKGCSYAIIDEKEYAEEG------NDRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +        A     +    ++ +TGT+GK++    +  +         +     T
Sbjct: 70  ILVKDALVAFKKIARLHRREFHIPVIGITGTNGKTTSKELISAVLSE------KYNVLHT 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D  +           L       +  + + AS  G  +  ++ ++   G  TN+
Sbjct: 124 EGNFNNDVGVP-------KTLLRLDGKHEIAVIEMGASHQGDIKKLVEYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++   + +     K  L++ L   +    +   +    E+   A     R++S G 
Sbjct: 177 GRAHLEGFGSFEGVKLTKGELYDYLKANDCLLFLNESNPDLSEMA--AQRNFERIISYGQ 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                   ++              G ++ + +  L G + + N L A  L +   +    
Sbjct: 235 NDMVNVQGEIIDCAPFLHFRWREVGSEWKEVMTHLVGAYNLDNMLAAIALGLHFSVAPQQ 294

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   LE       R +   T      +   Y    +S+   ++N R +     + + G  
Sbjct: 295 ICHALETYVPSNNRSQLTET-VHNKLVVDAYNANPSSMVAAIENFRLMNVENKMAILGDM 353

Query: 392 GDRDQGKRPIMGKI-----ALDLADIAIVTD-------DNPRSEDPEKIRAEIIHGIP 437
            +  +       K+     A  L ++ +V +       D  +  D E+++AEI    P
Sbjct: 354 RELGEVTDVEHQKVVEQLKAAGLTNVWLVGENFGKTNTDFKKFHDVEEVKAEIAKAQP 411


>gi|126662328|ref|ZP_01733327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
 gi|126625707|gb|EAZ96396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
          Length = 428

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 135/375 (36%), Gaps = 30/375 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+D+R I+   +FVA+ G+  D + F  +A+ +GA+ +V+ ++    D         
Sbjct: 15  SSVSTDTRKIEKNSLFVALKGDNFDANTFSKEALEKGAKYVVIDNSKFYIDERT------ 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+V+++   L   A          I+ +TG++GK++    +  +  +   +   IG  
Sbjct: 69  --LLVEDSLIALQELAKFHRKHLGLTIIGLTGSNGKTTTKELIHAVLLKKYNTLATIG-- 124

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   L +     +  V + A+     +   +  +   G  T
Sbjct: 125 --------NLNNHIGVPLTL---LRFTKDTEIGIVEMGANHQKEIEFLCEIAQPDFGYIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L+  +        I ADD   KE   +++N      S 
Sbjct: 174 NFGKAHLEGFGGVEGVIKGKSELYNYIKNNNKTVFINADDPLQKE---KSNNLTTYSFST 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 + + KV A        + +   D      L G +   N   A  +     I   
Sbjct: 231 NETEADVTISKVVANPM-----VQISFNDETINSHLIGIYNANNINAAITIGHYFKISDK 285

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           L+ E +E       R + +  N     I   Y    +S++  + N   +     I + G 
Sbjct: 286 LIKEAIENYIPENNRSQLIEKNGNKI-ILDAYNANPSSMQAAITNFIQLEDNSKIAILGD 344

Query: 391 GGDRDQGKRPIMGKI 405
             +  +       KI
Sbjct: 345 MFELGEESLLEHKKI 359


>gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 454

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 89/507 (17%), Positives = 185/507 (36%), Gaps = 66/507 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +I   ++ +  + ++  DSR I+ G +F+ + G + DGH FI
Sbjct: 1   MKLS---LYEVAKVVEAQNII-SEFDDVPLKQIEFDSRKIEKGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A   GA A       S            P L+V +  K     A     K   +++AV
Sbjct: 56  DKAFESGAVATFSEKEIS----------GHPYLLVKDCLKAFQKLAKYYIEKMRLDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    ++ +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIEAVLATTYKTYKTQG--------------NYNNEIGLPYTVLHMPDD 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  I +      T +G  H+++  +++     KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHLGDIHLLSEIAQPHIAVVTLIGEAHLEFFGSREKIAQGKMQITDG-MN 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                I   D   D Y  E           V+  G   +   +       +K  ++ +  
Sbjct: 211 SHGILIAPGDPIIDPYLPE--------NQMVIRFG---ENQEIFVKSIEESKNSLSFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PL G++   NA++AA +   + +    ++E LE + +   R E+    S G 
Sbjct: 260 VLNQALTLPLSGKYNATNAMLAAYVGKLLAVADEDIIEALEHVQLTRNRTEW-KKASNGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIAL----D 408
            I  D Y     ++ +IL+    I     G+ I +     +       +  ++      D
Sbjct: 319 DILSDVYNANPTAMRLILETFTQIAPNQDGQKIALLADMKELGPSSVDLHCQLIEALNPD 378

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             +  I    +   E   ++ +++   G   F  K +  +        + +     + G 
Sbjct: 379 DINHLIFYGKD--IEALAQLASQLYPIGKVFFFRKTDTEDQFEDLCHHVQE-----ILGA 431

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
                 I+  G   M+++ +++  +L 
Sbjct: 432 ---NDQILVKGSHSMNLE-EVVNRLLA 454


>gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 426

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 103/492 (20%), Positives = 190/492 (38%), Gaps = 78/492 (15%)

Query: 1   MKLQ-DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL   ++ K F  L           +E  I  V  DSR + AG +F AI     +G+ +
Sbjct: 1   MKLLCQILQKRFSHL-----------KELSIQNVVMDSRKVVAGSLFFAIQ----NGNRY 45

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+ +GA  ++    +   +          ++ V +T  F+   A+         ++A
Sbjct: 46  VSEALEKGASIVIADHYFEPHER---------VISVKDTVLFMQELAAEYRSFLKTKLIA 96

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +TG++GK++    V  I        +  G  +  IG   TI +  + +            
Sbjct: 97  ITGSNGKTTTKDIVYAILSKTFPTKKTLGNYNNHIGLPFTILNLEEGDEF---------- 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + +  SS G         +   G  TN+G  H+++ +T++  F AK  
Sbjct: 147 ----------AVLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTE 196

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L   +   I   DD + K+V           + VGY+    + + V     ++  +
Sbjct: 197 LLPYL--PQGHFITSGDDIFLKKVSG---------VHVGYEEGNDY-RIVSYRKKERMTS 244

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             V GKD++    L G+  V NA +   L   IG+    +  +L ++ + P RFE     
Sbjct: 245 FQVRGKDYE--ICLEGKHNVMNAAMGIALAEMIGMKPEEIQRNLSQIELSPMRFERF--E 300

Query: 353 SRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
            RG     D Y  +  S+   L ++  + + R   V G     G+R+      + + A+ 
Sbjct: 301 YRGTEYINDAYNASPISMFAALDSLEEMKAERKFAVLGDMLELGEREIEFHKEVIQKAMS 360

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               A++           K+    +    G     +  EAIR  +   +++ VL+ A +G
Sbjct: 361 CHLQAVLL-----YGTRMKLALHELPFHEGLYHFES-KEAIREYLRKFSEKTVLIKASRG 414

Query: 469 HETVHIVTNGEK 480
            +   I+   EK
Sbjct: 415 MKLEDIIEGEEK 426


>gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 460

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 141/399 (35%), Gaps = 30/399 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+ VS+D+R+I +  +F+A+ G + D H F   A   GA+A++VS          
Sbjct: 19  GADTSISAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSK--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            +  + P LVV +TR  L    +     +  KH    LA+TG+ GK++V      I    
Sbjct: 70  RLPVDLPQLVVTDTRIALGQMGAWLKVEMTQKHGLKTLALTGSCGKTTVKEISAAILATK 129

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G      G          +      +P+ L   L          + + A+      +  +
Sbjct: 130 GNVLATAG----------NFNNDIGAPLTL---LRLTPEYQYAVIELGANHQQEISYTTN 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +K       NL   H++   + +    AK  +FE L      AI+  D           
Sbjct: 177 LVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGL-SDGGIAIVNLDSNDLPLWQPLL 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                   S        H +++          T+       D    L G   V NAL AA
Sbjct: 236 AQHQVLTFSATASDADYHAERININAQGLACFTMCTPIGKVDVNLTLAGMHNVANALAAA 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L I++G   A V   LE +  V GR +     +    I   Y  +  +++  +  +   
Sbjct: 296 ALTISLGATLAEVKAGLETMANVKGRLDITEPRAGLRLIDDTYNASVAAVKAAIDVLANF 355

Query: 380 TSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVT 416
              R  ++       D+       +G+ A       ++T
Sbjct: 356 QGQRYFILGDMAELGDESDNLHREVGEYAQAKQLDCVMT 394


>gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
 gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
          Length = 464

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 90/461 (19%), Positives = 159/461 (34%), Gaps = 62/461 (13%)

Query: 26  RERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            +R +  V +D+R  I  G +F A+ G + +GH F+ +A A+GA   VVS          
Sbjct: 22  PDRIVRAVFTDTREEIPEGALFFALKGERFNGHHFVAEAGAKGALGAVVSRLPEQP---- 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-------IC 137
            +  +  IL V +    L   A  +       ++ VTG++GK++    +         + 
Sbjct: 78  -LPPDFLILEVTDVLAALQRLAHYVRRATGPFLIGVTGSTGKTTTKDLLAAVLAVRHRVL 136

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  + +IG   T+                    L          V +     G    
Sbjct: 137 ATRGNRNNEIGVPLTL--------------------LELGPEHEFAVVEMAMRGEGEIAA 176

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                +  A   TN+G  H++   + +A   AK  + +  +P E  A++ A+  + +E  
Sbjct: 177 LSALAEPNAAVITNIGEAHLERLGSVRAIARAKGEILDY-IPPEGFAVLPAESPFIEE-- 233

Query: 258 KRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             A     +V+  G   K     L             +     + ++  PLPG     N 
Sbjct: 234 -EARRCRGKVIYFGESDKAQVRLLSYTSLGEKGCVFRVRTATGEEEYQLPLPGYHNALNC 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
                +   +G     V E   ++     R E      RG  +  D Y     S+   L+
Sbjct: 293 TAVIAIARQLGFSPEEVQEGFRRVQTSGMRLEIEH--WRGFTVINDAYNANPASMAGALE 350

Query: 375 NIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +  +  GR  V          +R       +G+ A  +AD+ +V  +  R         
Sbjct: 351 VLAELGKGRRKVAVLGDMLELGERTVAAHREVGEKAAAVADLLVVVGERAR--------- 401

Query: 431 EIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVV 464
           ++  G        +R        EAIR  +  L   +VL+V
Sbjct: 402 DLAAGALSAGMPPDRVLAVATVEEAIRQLMNELEGDEVLLV 442


>gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
 gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
          Length = 451

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 86/483 (17%), Positives = 172/483 (35%), Gaps = 49/483 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +QD++      L+   +  P       IN +S+DSR +    +FV IVG + + H F+
Sbjct: 4   MTIQDILAATGGTLLCGDASMP-------INRLSTDSRDVGPHTLFVPIVGERVNAHKFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  G  A +       +          PI+ V +T K +   AS    K    I+ +
Sbjct: 57  ESALKDG-GASLTQEHEQAEGPH-------PIIKVPDTLKAMQQIASFYRNKMSLPIIGI 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  + +       +     T+ +           P+ L +     S  
Sbjct: 109 TGSVGKTTTREMIAHVLK------GKYRVFETVGN----QNSQVGVPLTLDRL---TSRD 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S  G      + I+  A   TN+G  HI+   ++      K+ + +  LP+
Sbjct: 156 QIGVLEMGMSEPGQITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDI-QNGLPE 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
                +  D+   ++ +    +        G+        +    IH +   T   E   
Sbjct: 215 NGVLYLNGDNDMIRKHIGYVTHPYEF---FGFSEDCSYRAEGTEEIHGQTHFTFVHENMK 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              +  + G+  V NAL A  L +A  +    +   L        R   +     G  + 
Sbjct: 272 EPVILNVLGDHNVSNALAAIALGLAYEVPMETIKRQLATFSG--QRQNILKI--HGYTVI 327

Query: 360 VD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIA-----LDLADI 412
            D Y  + +S++  LK +      GR I V     +          ++       D+ D+
Sbjct: 328 DDAYNASPDSMKAGLKILSDYKDSGRKIAVLSDMLELGPDSPDYHREVGEFLGTADITDL 387

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHET 471
            I    + +  +  + +   +     +    +  E I    + L + DV+++ A  G + 
Sbjct: 388 YITGTLSKKYAEAAQKKNLSLK--TKWFSSND--ELISYLKDYLKENDVVLIKASNGMKL 443

Query: 472 VHI 474
             +
Sbjct: 444 YEV 446


>gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 465

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 147/424 (34%), Gaps = 29/424 (6%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +    +I  L          E KI  V  DSR +  G +++ I G K +GH ++ QA
Sbjct: 1   MIIRSIDAIIRMLDADYIENGAIEEKIQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           IA GA+A++                   +++V++T K L   A     +    ++ +TG+
Sbjct: 61  IANGAKAVLWERK------EPNPPKEVVVILVEDTTKALQDLAKAYRHQLNMKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    +  + Q             T+ ++  +  +           LS   +    
Sbjct: 115 NGKTSTKDILASLLQE------HYITQKTLGNYNNEIGVP-------LTLLSLSENVEAA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +   + G        ++      +N+G  H++  +T +    AK+ + E L  +   
Sbjct: 162 VIEMGMENLGELSFLTHMVEPDIAIISNVGTAHLENLKTMENIAKAKLEIVEGL-KEHGL 220

Query: 244 AIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            I   D    +  + +A      R+ + G + +  ++        ++ V+  +      +
Sbjct: 221 FIYNGDQEILQNAVTQAQIPGHIRIRTFGVKPQNDYVISHI-TQKREGVSFCLNDDVCPY 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+ Q  NA  A     A+G+    + E  + +     R E V        +   Y
Sbjct: 280 HVDMIGKHQAMNATAAWIAAKALGLSVEEIREGYQNIEKTGLRNELVDF-GNCLILNDSY 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
                S    L  +        I V       G   D     +   +A    +  +   D
Sbjct: 339 KSNPQSALAALDTMEEFDVPYKIAVLGDMLELGDTSDMIHYTLGKDLAKYHLNEVLTIGD 398

Query: 419 NPRS 422
             R 
Sbjct: 399 MARY 402


>gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
 gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
          Length = 476

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 92/460 (20%), Positives = 164/460 (35%), Gaps = 55/460 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +QAG IFVA+   + DGH F+ QA+ +GA A +VS           +  + 
Sbjct: 24  TGVSIDTRTLQAGDIFVALSDVR-DGHDFVQQALDKGAAAALVS------HVPQGVPEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V + ++ L         +    ++AVTG+ GK+S    +  +    G +   +   
Sbjct: 77  PLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHASV--- 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ +       V     +H G                
Sbjct: 134 -----------ASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVALI 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++  +        K  +FE ++P    AI+ AD   S  +M +A +   R ++
Sbjct: 183 TTVAAAHLEAFEDITGIAVEKASIFEGVVP-NGVAILNADVETSAILMAKAQDCRLRDIT 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G  G    L +     +   V   +      +    PG     NAL A  +  A+  D 
Sbjct: 242 FGEHGYDFKLMRADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNALGAVAVMAALRTDV 301

Query: 330 ALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-----YAHTSNSLEMILKNIRT---- 378
           AL L  L +     GR   E +  +S   R++VD     Y     S+   L+ +      
Sbjct: 302 ALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAKVT 361

Query: 379 -----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
                ++ GR I   G   +    +  +   +A   A   I         D       ++
Sbjct: 362 NDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEI---------DVIHCIGPVM 412

Query: 434 HGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVVAG 466
             +   + +  R        EA       ++  DV++  G
Sbjct: 413 RALYDALPEPQRGTWFETAEEAATRVKTHIDSGDVVLAKG 452


>gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 456

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 97/466 (20%), Positives = 159/466 (34%), Gaps = 47/466 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL   L    +   +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 7   FSELTVPLDARLVGG-DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKGAVG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSV 129
            +V              +  P LVV +TRK L+   A    G     + AVTG+SGK++V
Sbjct: 66  ALVEHEVEG--------AALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G      G  +                      L          + + A
Sbjct: 118 KEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAVIELGA 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G   + +   K      TN G  H+      +    AK  + E  +     A++  +
Sbjct: 165 SRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEG-VEASGTAVLNLE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D       KRA        ++       H  ++          T++           L G
Sbjct: 224 DKAFPIWRKRAGPRNILTFALADAAADFHAGELSRDARGCPSFTMASPLGSAQVQLNLLG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA    A+G+    ++  L  +  V GR       S G R+  D Y     
Sbjct: 284 THNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRA-VAQIASNGVRVIDDTYNANPG 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +  +   T   ++V+   G      +QG   +    A  ++ +  V         
Sbjct: 343 SINAAVDILTGFTGRTVLVLGDIGELGEWAEQGHHDVGAYAAGKVSALYAVGP------- 395

Query: 425 PEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                  + H +  F E      ++ E I       +    L++ G
Sbjct: 396 ------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|213418873|ref|ZP_03351939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 300

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129
           +  +     D         P++ +    + LS  A R Y +  EN  ++AVTGT+GK++ 
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G     +         TT S + +   L+ L +QG T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+         AI+ A
Sbjct: 184 VSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNA 241

Query: 249 DDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           DD   +  +    +A        ++    G+++  + V        +  +    +
Sbjct: 242 DDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGE 296


>gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
 gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
          Length = 451

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 98/457 (21%), Positives = 169/457 (36%), Gaps = 58/457 (12%)

Query: 11  FPELINQLSIFPMQWRERKINEVS----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +L+  L   P+   E  + +VS    +DSR ++ G +FVA+ G+K DGH F+P AIA+
Sbjct: 7   LSQLVEVLLASPINLSETALTQVSCGIQTDSRTLKLGEVFVALRGDKFDGHKFVPTAIAK 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +V   Y    F        P+L V +T K           +    ++ VTG+ GK
Sbjct: 67  GAIAAIVDFEYENPGF--------PVLRVKDTLKAYQQIGRWWRDRFNIPVIGVTGSVGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +    G      G          +       P  L   L   +      + 
Sbjct: 119 TTTKELIAAVLGTKGQVHKTYG----------NYNNEIGVPKTL---LELGAENDYAVIE 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G         +   G  TN+G  HI+   +++A   AK  L  E +  +S AII
Sbjct: 166 MAMRGRGQIAELTQIARPTIGVITNVGTAHIELLGSEEAIAEAKCELLAE-MAADSVAII 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+     +   A      VL+ G+ G  I  + +             E        PL
Sbjct: 225 NHDNPLL--MATAAKVWHGEVLTYGFSGGDIQGQLLDNDQM--------EVAGIQLPLPL 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     N L A  +   +GID + +   +E + +  GR +     +    +   Y    
Sbjct: 275 PGRHNATNFLAALAVAKVLGIDWSNLKAGVE-VDMPTGRSQRFTLPNDVIILDETYNAAP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRS 422
            ++   L+ +      R I V G   +  +  + +  ++   +     D  +V  D    
Sbjct: 334 EAMIASLQLLADTPGKRKIAVLGAMKELGERSQQLHQRVGETVRKLNLDGLLVLVD---G 390

Query: 423 EDPEKIR--------------AEIIHGIPGFIEKGNR 445
           ED E +               AE++  +  F++ G+R
Sbjct: 391 EDAEAMALSAEGIPSECFATHAELVARLKTFVQTGDR 427


>gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
 gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci RD1]
 gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
          Length = 448

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 171/473 (36%), Gaps = 47/473 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+     +P   +  KI+ V+ DSR ++ G +F A+ G   DGH F+ Q
Sbjct: 1   MRSILLEDWVTLMLSNVKYPRSGK--KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A VVS  Y    F         ++VV++T + L              I+ +TG
Sbjct: 59  AAQSGAVAAVVSKDYQGDSF------GLELIVVNDTTEALKEAGESQSHLFQGTIVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++  +F +                S    +A      +   + L+  ++    +  
Sbjct: 113 SIGKTTTKAFAKTFLS------------SVYRVYASPKSYNSQLTVPLSLLMAD-GDEDF 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ--QAYFNAKMRLFEELLPK 240
             + +  S     Q  L  ++      TN+   H+     Q  Q     K  +    L  
Sbjct: 160 VILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNFPDQGVQGIAEEKSHI----LRN 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  D  +    MK++ +A     +   +    + K +     K  V IS    D 
Sbjct: 216 SRVQLLPKDSPWYSYFMKQSVSAEKFSFAFYDETADFYYKAIR----KDSVVISTPEGDI 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF    P +    N L++  L   + +    ++     L + P RFE   +   G +I  
Sbjct: 272 DFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPMRFE--QSVRNGIQIIN 329

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-----ALDLADIAI 414
           D Y     ++   L  I   + G   V+   G   + G     G       AL  A I  
Sbjct: 330 DAYNACPEAMIAALDAIPNPSEGGK-VILILGHMAELGNHSEEGHTVVANKALSKASIIF 388

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAG 466
                   E    IR  + H         +  + I   ++  + + D++++ G
Sbjct: 389 FI-----GEKWLPIRHLLKHDTCEVSFYPS-AQGIEEILKKVVQQGDIVLLKG 435


>gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 448

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 168/455 (36%), Gaps = 60/455 (13%)

Query: 5   DLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L   +  + +N +L IF     +  +   S +S+ I    +F+ + G++ DGH F+ +A
Sbjct: 2   NLWLSEIAKAVNGELKIFS---TDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDFVKEA 58

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
           +  GA + +    +             P + V +T   L   A     K  +  ++ VTG
Sbjct: 59  LQNGAISFISQKDFD--------DLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTG 110

Query: 123 TSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + GK+S   ++  +        +  G  +  IG   +I +  +D +              
Sbjct: 111 SVGKTSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQ-------------- 156

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V    +  S+ G         K   G  TN+G  HI+  +++   F AK  + +
Sbjct: 157 ------VAVFEMGMSNFGEISKLSQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQD 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P+    II  D+       K       +V+++G + +     +    H       S 
Sbjct: 211 G-MPESGILIINNDNDILNLHKKEFKR---KVVTIGIENESNFRAQNVQKHQNG---FSF 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E   + +         +YN+L A  +   + ID  L+ E + +   +  RFE +  N   
Sbjct: 264 EVGGYTYFIKSFNFHDIYNSLFAIAVGTILEIDRELIKEAILQKERLKRRFEVI--NKGS 321

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLAD 411
             +  D Y  +++S+   + +I      +I+V   +   G   ++  R +   I     D
Sbjct: 322 ITVVDDTYNASTHSMLSAIDSICEFDGKKILVLGDMLELGEFSEEEHRRVGRYILQKPID 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444
           + I T  +        I  E     G+  +    +
Sbjct: 382 VVICTGKDAFY-----IFDEAKKKDGVKAYFVSKD 411


>gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
          Length = 504

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 100/498 (20%), Positives = 161/498 (32%), Gaps = 53/498 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + +L  +   E+     I  +   +  +   V  DSR I  G IF+A+ G + DGH F  
Sbjct: 1   MIELTTQKIAEVTGSTLINDVD-PQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFAD 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRS------NTPILVVD------NTRKFLSLFASRL 109
            A+  GA  ++V          A          N      D           +   A   
Sbjct: 60  AALNSGAALLIVGRPVEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYN 119

Query: 110 YGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                      ++ VTG++GK+S    +  + + +G +    G  +              
Sbjct: 120 TDVLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAGR 179

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
              +L    S +S++GV H           QH         G   N+G  H+    ++QA
Sbjct: 180 DTRFLV---SEMSARGVGH----------IQHLTTVTPPRVGVVLNVGSAHLGEFGSRQA 226

Query: 226 YFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              AK  L E L        A++ ADD     + KR      R  + G  G         
Sbjct: 227 IAQAKGELVEALPAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYY 286

Query: 284 AIHN------KQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           A         +    +    G+       + G  QV NAL AA + I +GID+A V   L
Sbjct: 287 ATDIELDAVARASFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLL 346

Query: 337 -EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGC 390
              +     R +     S G  I  D Y     S+   +  +     GR       V G 
Sbjct: 347 SSHVAASVNRMDVRTRESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQ 406

Query: 391 GGDRDQGKRPIMGK----IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
            G+  +       +    +A    D A++        +   +               N  
Sbjct: 407 MGELGEDASDEHAELGHVLAQRRIDHAVIVG---NGVNQRALANAARESGVETQVVENID 463

Query: 447 EAIRTAIEMLNKQDVLVV 464
            A+      LN QDV+++
Sbjct: 464 GAVNYLDMSLNPQDVVLI 481


>gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola]
          Length = 292

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 146/302 (48%), Gaps = 19/302 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L Y  FP + N          ++K + +S DSR + +  +F+AI G K+DG+ FI
Sbjct: 1   MKKNNLKYILFPWIKNT--------PQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+ +   AI+  +    +       +N PIL      + +S  A+R+Y +  +   I+
Sbjct: 53  FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKII 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   + Q  +  G     +G       +  +  + TT S I +   L   
Sbjct: 113 GVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + + +  V++E SSHGL Q+R+  I    G FTNL +DH+DYH+  + Y +AK   F + 
Sbjct: 173 AKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ- 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------GYQGKFIHLKKVCAIHNKQQV 291
             K    I+ A+D Y+K+ +++  +     +++       Y  K+I+   +    N   V
Sbjct: 232 -HKIKKIILNANDKYAKKWLRKLSDKYTIAVTIQNEKQKKYSTKWINATGIKYNVNSTDV 290

Query: 292 TI 293
             
Sbjct: 291 EF 292


>gi|329901108|ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549207|gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 464

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 22/383 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +   + +S+DSR   AG +FVA+ G K D H F+          +      ++       
Sbjct: 20  DASFDGISTDSRTAPAGSLFVALRGEKFDAHKFMD--------GLAARGVAAVVVERVPK 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L+V +TR  L   A     +    ++ VTG++GK++V   +  I    G +   
Sbjct: 72  GMEIPALIVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEMLAAIL---GTALGA 128

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +T  +F  D  +        A   + +   G+ H    A    + Q          
Sbjct: 129 DHFLATRGNFNNDIGVPLTVLRLHAGCRAAVIELGMNHPGEIAQLSMIAQ-------PTL 181

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N  R+H ++  + +A       +   L P    A+  ADD Y+      A   G R
Sbjct: 182 GLVNNAQREHQEFMVSVEAVAKENGAVISAL-PANGIAVFPADDPYAPLWRGLATAIGQR 240

Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V++ G+           A     ++ +    + F       G+  V NAL A    + I
Sbjct: 241 KVMTFGFSDDADVSCSWKADGFGSELQVRAGERTFTVKVDAAGQHNVRNALAAIACALGI 300

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    ++  L     V GR +     S    I   Y    +S+   ++ +    S R++
Sbjct: 301 GIGIDAIVRGLAAFAPVNGRLQRKHAASGAQVIDDTYNANPDSVRAAIEVLAQAPSPRVL 360

Query: 386 VVFGCGGDRDQG--KRPIMGKIA 406
           V+   G   + G      +G  A
Sbjct: 361 VLGDMGEVGNDGRQYHEEVGAYA 383


>gi|134102303|ref|YP_001107964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914926|emb|CAM05039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 458

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 96/462 (20%), Positives = 158/462 (34%), Gaps = 60/462 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR +  G +FVA+ G + DGH F  +A+A GA  ++ +                 +
Sbjct: 1   MEFDSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREVDAP----------AV 50

Query: 93  LVVDNTRKFLSLFA--------------------SRLYGKHPE-NILAVTGTSGKSSVAS 131
           +V     +   L A                      +  + P   ++ VTG+SGK+S   
Sbjct: 51  IVPPVPAEATGLMALAGDTDGSGAAVLAALARLARYVVDRLPRLTVVGVTGSSGKTSTKD 110

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + Q+ +  G +    G  +                 +L   LS             A  
Sbjct: 111 LIAQLLEPMGPTVAPPGSFNNELGHPWTALRADEDTRHLVLELS-------------ARG 157

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G      +      G+  N+G  H+    +Q+A   AK  L E L P +  A++ ADD 
Sbjct: 158 VGHIAKLCEVAPPRIGAVLNVGHAHLGEFGSQEAVARAKGELVESL-PADGVAVLNADDP 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGE 309
               V   A     RV+ VG   G  +  + +      +   T+           PL GE
Sbjct: 217 L---VAAMASRTRARVVLVGESPGAHVRAEDIVLDEQARPSFTLVAPQGSAQVSLPLHGE 273

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AA + + +G     V + L  +  V  R   V   + G  +  D Y     S
Sbjct: 274 HHVGNALSAAAIALELGATLEQVADRLSGVRRVSARRMEVAETADGVTVVNDAYNANPES 333

Query: 369 LEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAIVTDDNPR 421
           +   LK + ++T    GR   V G     G+        +G++A+    D  +V  D   
Sbjct: 334 MRAALKTLASMTRGRPGRAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVVVGDQAA 393

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                             +   +   A+      L   DV++
Sbjct: 394 GMHHGASLEG--SWGEESVLVPDVDAAVALLRAELRPGDVVL 433


>gi|91215145|ref|ZP_01252117.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186750|gb|EAS73121.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 427

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 135/375 (36%), Gaps = 32/375 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + + +D+R I++  +F A+ G+  DG+L+  QA+ +GA   V+ +     D         
Sbjct: 15  SSICTDTRKIESNCLFFALKGDNFDGNLYADQALEKGASFAVIDNPDLQGDRK------- 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V N    L   A     +    I+A+TG++GK++    V ++  +        G  
Sbjct: 68  --ILVKNVLATLQDLAHFHRKQLKIPIVAITGSNGKTTTKKLVSEVLSKKFKVRATKG-- 123

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   LS+ +   +  + + A+     +      +   G  T
Sbjct: 124 --------NLNNHIGVPLTL---LSFTAELDLGIIEIGANHQKEIESLCKIAEPNYGYIT 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L++ L+  +       DD      ++       +  S+
Sbjct: 173 NFGKAHLEGFGGVEGVIKGKSELYDYLIHHDGLIFFNRDDD-----IQVKKAVNYKNYSI 227

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +     L             + +E         L GE+   N   A G+    G+   
Sbjct: 228 GEKP----LSDCRVTFMDANPFVELEYSHLQIKSQLIGEYNFKNIAAAIGVGRYFGVGKD 283

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E +E       R + +  N     +   Y     S++  L++ + ++S    V+ G 
Sbjct: 284 EIKEAIENFEAEEMRSQVIEKNDLKI-LLDAYNANPTSMKAALESFKKMSSQSQTVILGD 342

Query: 391 GGDRDQGKRPIMGKI 405
             +  +       +I
Sbjct: 343 MFEIGETTLEEHRQI 357


>gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 476

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 166/440 (37%), Gaps = 34/440 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ +++DSR ++   +++ I+G + DGH FI  A A GA A++  S +     +   + +
Sbjct: 38  IHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACANGAAAVLCDSDH---LPAWQGKID 94

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I+ V +T + +   A+    ++   ++AVTG++GK++    +  +             
Sbjct: 95  AGIVGVADTFEAMRALAAANRARYDIPVVAVTGSAGKTTTKDLIASVLS------MGYQT 148

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T  +F  +  +            + +   G+ H    A S G        ++   G  
Sbjct: 149 MKTQGNFNNEVGVPLTLFQLTPAHEAAVVEMGMNHPGEIARSIGE-------VRPHIGVI 201

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H++   +++    AKM +F   + K+  A+I  DD Y + ++ R      RV+ 
Sbjct: 202 TNIGSAHLENLGSKENTLKAKMEIF-GTMEKDDIALINGDDPYLRRIVAR----DYRVVR 256

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           VG +     LK      +   +    +G  F F +  PG   VYN L+A  +     +D 
Sbjct: 257 VGIREPDADLKAEAIREDLSGLYFEADGVPFHFKW--PGIHNVYNCLIAIWIGRYYHLDD 314

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A +   L+       R +          +   Y     S+   +  +  +  GR I V G
Sbjct: 315 AAIQAGLDAFVPSGNRMQMAEVGGLRF-VNDAYNANPESMRAAMDTVCAVAEGRKIAVLG 373

Query: 390 CGGDRDQGKRPIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
              +  +         G+ A    D+ I        E  E +        P         
Sbjct: 374 DMLEIGENAEAWHRAVGEYAGTHMDVLIG-----VGEWAETLCEGARGAAPNHPAVAAAT 428

Query: 447 EAIRTAI--EMLNKQDVLVV 464
                 I  E+    D +++
Sbjct: 429 VDAAAQILGEIAQTGDTVLI 448


>gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
 gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
          Length = 472

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 98/455 (21%), Positives = 167/455 (36%), Gaps = 51/455 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +   VS DSR ++ G +FVA+ G + DGH F+ Q   +GA   ++S   +        
Sbjct: 32  DFEATGVSIDSRSLEPGDLFVALTGAR-DGHEFVVQTADRGAAGALISKPVA-------- 82

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               P ++V++T   L         + P+    AVTG+ GK+SV   V+   +R+G +  
Sbjct: 83  ---IPAVLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTSVTRAVEAGLRRAGKAHA 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +               +  + I +   L+ +          V  +  G        I+ 
Sbjct: 140 SV--------------KSYNNHIGVPLTLARMPRDTQRAVFEVGMNHSGEITPLSGFIRP 185

Query: 205 IAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            A + T +G  H++     ++    AK  +F  + P    A++ AD+ +   +   A  A
Sbjct: 186 HAVAITTVGPVHLENFADGEEGVARAKAEIFAGIEP-NGVAVLNADNPWFPLLKAEAEKA 244

Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G  V S G  +G    L +  A  N   +T  + G    F     G     N+L    + 
Sbjct: 245 GAEVWSFGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVLLML 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTI 379
            A+ +D    L  L +   + GR  E V     G    VD  Y     S++  LK +   
Sbjct: 305 EALDVDRETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTLGAR 364

Query: 380 -TSGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +GR IVV       G    +    +   IA    D+               +   +  
Sbjct: 365 EVAGRRIVVLTDMLELGPLSARFHSDLATPIAGADIDLVFC---------AGPLMKSLWE 415

Query: 435 GIPGFIEKGNRIEAIRTA---IEMLNKQDVLVVAG 466
            +P     G    A   A   +  +   DV++V G
Sbjct: 416 ALPPTRRGGYAESAAELAPQVVSAIRAGDVVMVKG 450


>gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 455

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 165/474 (34%), Gaps = 53/474 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L      E +       +   +     V +DSR I    +FVA+VG   DG+ ++
Sbjct: 5   MRLSEL-----QEPLQG----RITGEDVCFTNVFTDSRQIAKNGLFVALVGENFDGNDYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 GA A +VS + S         S  P L V++T+  L    +     +   ++A+
Sbjct: 56  EAVAENGAVAALVSRSSS---------SALPQLCVEDTQTALGRLGAFNRDLYTGPLVAI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++  + +  +  + G +    G                         L      
Sbjct: 107 TGSSGKTTAKNLINGVLSQRGATLATNG-------------NFNNEVGVPLTLLRLSQEH 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V + A+  G      +  +       N    H++   + +     K  +F+ L   
Sbjct: 154 EFAVVEMGAARQGDISWLCELGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDAL-AA 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ AD  ++++   RA  A     S+      +  +                    
Sbjct: 213 GDVAVVNADQPWAEDWKARAGTATILDFSLNGDAAVVATQIESHGIAGSSFVAVTPKGCV 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    LPGE  + NAL A  + +A  +    +   LE +  V GR   V   + G  +  
Sbjct: 273 DVSLRLPGEHNIANALAAIAVGLACELALDEIAAGLESVAPVAGRLS-VQVAASGALVID 331

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLADIAIVTD 417
           D Y     S    +  +   + G+  +V G   +  +    +  +  +    A +A    
Sbjct: 332 DCYNANPGSALAAIDTLAA-SEGQGTLVMGAMLELGENSVELHRQLGVHAREAGLA---- 386

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAG 466
                     + AE+   +  F E+G R      +A+  A    ++ D +++ G
Sbjct: 387 ------QFWGVGAELKVAVDAFGERG-RWFEHCDQAVVAASASFSQGDTVLIKG 433


>gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
 gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
          Length = 504

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 99/498 (19%), Positives = 162/498 (32%), Gaps = 53/498 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + +L  +   E ++  ++      +  +   V  DSR I  G IF+A+ G + DGH F  
Sbjct: 1   MIELTTQKIAE-VSGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFAD 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRS------NTPILVVD------NTRKFLSLFASRL 109
            A+  GA  ++V          A          N      D           +   A   
Sbjct: 60  AALNSGAALLIVGRPVEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYN 119

Query: 110 YGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                      ++ VTG++GK+S    +  + + +G +    G  +              
Sbjct: 120 TDVLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAGR 179

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
              +L    S +S++GV H           QH         G   N+G  H+    ++QA
Sbjct: 180 DTRFLV---SEMSARGVGH----------IQHLTTVTPPRVGVVLNVGSAHLGEFGSRQA 226

Query: 226 YFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              AK  L E L        A++ ADD     + KR      R  + G  G         
Sbjct: 227 IAQAKGELVEALPAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYY 286

Query: 284 AIHN------KQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           A         +    +    G+       + G  QV NAL AA + I +GID+A V   L
Sbjct: 287 ATDIELDAVARASFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLL 346

Query: 337 -EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGC 390
              +     R +     S G  I  D Y     S+   +  +     GR       V G 
Sbjct: 347 SSHVAASVNRMDVRTRESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQ 406

Query: 391 GGDRDQGKRPIMGK----IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
            G+  +       +    +A    D A++        +   +               N  
Sbjct: 407 MGELGEDASDEHAELGHVLAQRRIDHAVIVG---NGVNQRALANAARESGVETQVVENID 463

Query: 447 EAIRTAIEMLNKQDVLVV 464
            A+      LN QDV+++
Sbjct: 464 GAVNYLDMSLNPQDVVLI 481


>gi|302345941|ref|YP_003814294.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
 gi|302149087|gb|ADK95349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
          Length = 469

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 142/421 (33%), Gaps = 42/421 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IFVA+ G   DG+ F   A+ +G    ++      +        +   
Sbjct: 45  VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAK------AGDERY 98

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    +  +                
Sbjct: 99  ILVDDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEK------------ 146

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +                  L       +  + + AS  G  +  +  ++   G  TN+
Sbjct: 147 -FNVHHTEANYNNDVGVPRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNV 205

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L        +   +    E+ ++   A  R+++ G 
Sbjct: 206 GRAHLQGFGSFEGVKKTKGELYDFLKAHGCLLFLNESNPDLTEMAEQ--RAFDRIITYGQ 263

Query: 273 QGKFIHLKKVCAIHNKQQV--------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                    V +     +         T       ++    L G + + N L A  + + 
Sbjct: 264 DETADVQGYVVSCAPCLKFEWQSSSLNTHHPSPTIYEVQTHLIGSYNLDNMLAAIAIGLH 323

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+    +   LE       R +   T +    I   Y    +S+   ++N + +     
Sbjct: 324 FGVTPQQINYALENYVPHNNRSQLTET-AHNKLIVDAYNANPSSMAAAIENFQLMEVENK 382

Query: 385 IVVFGCGGDRDQGKRPIMGKI-----ALDLADIAIVTD-------DNPRSEDPEKIRAEI 432
           + + G   +          K+     A D+ ++ +V +       D  +  D ++++ EI
Sbjct: 383 MAILGDMRELGDASAEEHQKVVELLKATDIRNVWLVGEEFGKTQTDFRKFRDIDEVKKEI 442

Query: 433 I 433
            
Sbjct: 443 A 443


>gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF)
           [Rickettsia prowazekii str. Madrid E]
 gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-
           2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF)
           [Rickettsia prowazekii]
 gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           prowazekii Rp22]
          Length = 449

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 146/384 (38%), Gaps = 27/384 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH +I  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++V+N+ + L   A           +A+TG+ GK+S    ++ + Q   +     G  
Sbjct: 76  -IILVNNSFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G     +  +K       
Sbjct: 135 NNYLGLLINLASMADDTEYAIFEL-------------GMNHQGEISELVQILKPNIAMIN 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLS 269
           N+   H+++  + +    AK  +F+    K   AII A +    +++    N +   + S
Sbjct: 182 NISEAHLEFFHSLEEIAEAKCEIFKNF-SKNDIAIINASNNCYNKILSILKNLSITNIYS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G+  K      +     +Q  +   +  K  D   P        N      +   +G D
Sbjct: 241 FGHSSKASAKLILYKTLGEQVHLQYYINNKFIDITIPFIPRHFANNYTGVLLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
             +  ++L  + +  GR + +  N +  R+  D Y  +  S++  L+ ++ + +     +
Sbjct: 301 IEISAKYLADIALTKGRGKII--NIQNSRVICDYYNASPQSMKAALEYLKQVPADNKTSI 358

Query: 388 FGCGGDRDQGKRPIMGKIALDLAD 411
            G   +     + +  ++   + D
Sbjct: 359 IGEMLELGWNSQRLHEELVPYILD 382


>gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri DSM 4166]
          Length = 458

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 86/474 (18%), Positives = 158/474 (33%), Gaps = 49/474 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L       L+           +   + VS+DSR IQ G +F+A+ G + DGH ++
Sbjct: 5   MRLSELQLPLSGRLV---------GADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V+                P LVV +TR  L    +         + A+
Sbjct: 56  AEVAAKGAVAALVAREVEGAPL--------PQLVVADTRLALGRLGALNREAFKGPVAAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK+SV   +  I + +      +     +++                  L   +  
Sbjct: 108 TGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNN----------DLGAPLTLLELSAEH 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + AS  G   + +  ++      TN G  H+      +    AK  + + L   
Sbjct: 158 RSAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKIVQAKGEILDGL-SA 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
              A++  DD       +R          +           +           ++    +
Sbjct: 217 TGTAVLNRDDKAYPIWAERVAGKRIVSFGLDNPPADFSAGSIAYDQRGCPNFVLTGPLGN 276

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G   V NAL AA    A+GI +  V+  L+ L  V GR       + G R+ 
Sbjct: 277 LRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPVKGR-AVAQMLANGVRLI 335

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVT 416
            D Y     S+   +  + +     I+V+   G   +  +     +G  A    D     
Sbjct: 336 DDSYNANPASICAAIDVLASFAGRTILVLGDMGELGEWAEQGHRDVGAYAAGKVDTLY-- 393

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                      +   + H +  F        ++   I +          +++ G
Sbjct: 394 ----------AVGPLMAHAVAAFGQGARHFPDQASLIESLRAEQGSGTTILIKG 437


>gi|74316133|ref|YP_313873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055628|gb|AAZ96068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 464

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 150/410 (36%), Gaps = 35/410 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +            +   P+   + ++  V++DSR ++ G +FVA+ G + DG  F 
Sbjct: 8   MRLSE---------AAAMLGVPLPGADAEVVRVTTDSRTLRPGDLFVALRGERFDGGAFA 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ QGA  +V+  A +     A        L VD+TR  L   A     +    ++A+
Sbjct: 59  AQALQQGAAGVVLDRAQAPDLAQA--------LRVDDTRLALGRLAQAWRQRFAIPLVAI 110

Query: 121 TGTSGKSSVASFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG++GK++V   +  I +  +G ++  +     +++                  L     
Sbjct: 111 TGSNGKTTVKEMLAAILRVEAGDAAAVLHTEGNLNN----------DIGVPLMLLRLRDH 160

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  +  G   +     +       N    HI +  + +    AK  +F  L  
Sbjct: 161 HQYAVLEMGMNHAGEIDYLTRLARPDIAIVNNALTAHIGFLGSVENIARAKGEIFNGLT- 219

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+  ADD ++   + R  N    V+  G            A      +T+++    
Sbjct: 220 DAGIAVFNADDPHAG--LWREANRQRCVVDFGLVHATSVRGDYRADEFGSALTVTLPNAT 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D    +PGE  V NAL A     A+ +    V+  L     V GR +       G  + 
Sbjct: 278 LDIALQVPGEHNVMNALAAVAGAFALDVSHRSVVAGLAGFGGVKGRLQR-KAALHGSTVI 336

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIA 406
            D Y    +S++  L  +      +I V+   G   D        +G  A
Sbjct: 337 DDTYNANPDSVKAALAVLAQQPGKKIFVLGDMGELGDDAASMHEEIGVAA 386


>gi|255038275|ref|YP_003088896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
 gi|254951031|gb|ACT95731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
          Length = 434

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 133/387 (34%), Gaps = 31/387 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I  G IF A+ G+K DG+ +  +A+ +GA   VV           T+ +    
Sbjct: 18  VSTDTRQITDGCIFFALKGDKFDGNQYAAEALQKGAAYAVVDDP--------TVANGDRF 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+ ++    L   A          ++A+TG++GK++    + ++      +    G  + 
Sbjct: 70  LLFEDGLTALQDLARHHRKTLDIPVVALTGSNGKTTTKELIAKVLSMKFNTYATRGNLNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P            +   +  + + A+            +   G  TN+
Sbjct: 130 HIGVPLTVLSIDP------------AKHEMAVIEMGANHQQEIALLSSIAQPTHGLITNI 177

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++           K  LF+ L  K+    + +      +++ +    G  V     
Sbjct: 178 GKAHLEGFGGVSGIIKGKGELFDYLSKKKGTVFVNSTQDVIMDMVSKRRAFGEIVFYCSE 237

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                       I     V  S  GK       LPG +   N   A  +    G++ A  
Sbjct: 238 NSPI----NPTLIEENPNVVFSNGGKT--VTTHLPGRYNFDNICAALAVGKHFGVEDADA 291

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV----F 388
            E +        R + V   +    I   Y    +S+   + N   + + R I++    F
Sbjct: 292 YEAVATYEPDNNRSQIVKKGTN-TVIMDAYNANPSSMAAAVANFGRMEAARKILILGDMF 350

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIV 415
             G    +    +  +IA +  D+ I+
Sbjct: 351 ELGDAAPEEHLALGKQIAGEKFDVVIL 377


>gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
 gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
          Length = 465

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 91/405 (22%), Positives = 170/405 (41%), Gaps = 37/405 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I +++   +Q  +  IN+V +DSR      +F+A+ G   DGH F+ +A  QGA+A++V 
Sbjct: 9   IAEVAKGTLQGSDIIINKVITDSRVDCRDALFIALKGENFDGHQFVEKAKLQGAKALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      + SN P ++V +T K L L A  +  +    ++ +TG++GK++V   V 
Sbjct: 69  H---------LVESNLPQVIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I ++ G      G          +       P+ L   L    +     + + A+  G 
Sbjct: 120 SILRQKGNLLATQG----------NFNNHIGVPLTL---LRLKETDQYAVIEMGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +     K       N+   HI+   + +    AK  ++ + L +E  A+I  D  ++ 
Sbjct: 167 IAYCASLAKPDVSVINNVEAAHIEGFGSVEGVAKAKSEIY-QALSEEGTAVINLDSNFAD 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG------KDFDFLFPLPG 308
           + +++   AG + ++V        +   C   +   V  +++       +      P+PG
Sbjct: 226 QWIEQF--AGLQKITVSRHKDANFVADNCQTQDNGNVIFTMQHTQDGNSQSISVQLPVPG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NALVAA L  A G D  ++   LE +  V GR       + G  I  D Y  +  
Sbjct: 284 MHNVSNALVAAALASAAGADMEIIKVGLETMVSVKGRLNQFKA-ANGALIIDDTYNASVA 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDL 409
           S++  +  + ++ SG  ++V G      D  +     +G+ A + 
Sbjct: 343 SVKAAIDYLTSL-SGTKVLVLGDMAELGDESEQYHREVGEYAKEN 386


>gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 456

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 97/466 (20%), Positives = 160/466 (34%), Gaps = 47/466 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL   L    +   +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 7   FSELTVPLDARLVGG-DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKGAVG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSV 129
            +V              +  P LVV +TRK L+   A    G     + AVTG+SGK++V
Sbjct: 66  ALVEHEVEG--------AALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G      G  +                      L          + + A
Sbjct: 118 KEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAVIELGA 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G   + +   K      TN G  H+      +    AK  + E  +     A++  +
Sbjct: 165 SRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEG-VEASGTAVLNLE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D       KRA +      ++       H  ++          T++           L G
Sbjct: 224 DKAFPIWRKRAGHRNILTFALADAAADFHAGELSRDARGCPSFTMASPLGSAQVQLNLLG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA    A+G+    ++  L  +  V GR       S G R+  D Y     
Sbjct: 284 THNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRA-VAQIASNGVRVIDDTYNANPG 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +  +   T   ++V+   G      +QG   +    A  ++ +  V         
Sbjct: 343 SINAAVDILTGFTGRTVLVLGDIGELGEWAEQGHHDVGAYAAGKVSALYAVGP------- 395

Query: 425 PEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                  + H +  F E      ++ E I       +    L++ G
Sbjct: 396 ------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|119026103|ref|YP_909948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765687|dbj|BAF39866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 517

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 104/520 (20%), Positives = 205/520 (39%), Gaps = 48/520 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+++I  D    +  L    ++  +   + ++ D+R ++ G  F+   G +     ++  
Sbjct: 18  LREIIRGD----VWTLDPHDIKGFDEPFSAITYDTRKVEPGT-FLCCKG-RFK-AEYLQG 70

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +G  A V  + +S         +  P L+VD+ RK ++L ++  YG+ P++ L V G
Sbjct: 71  IDERGLAAYVSENDFSD-------ATQAPGLIVDDVRKAMALLSAEFYGR-PQDQLKVVG 122

Query: 123 TSGKSSV---ASFVQQICQRSGLSSFQIGPTSTI-----SSFAQDNRLTTPSPIYLAKAL 174
            +G       A   Q +    G S  +    S++          ++ LTTP  +   + +
Sbjct: 123 ITGTKGKTTTAYLTQAMLN--GCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMR 232
                 G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y + K +
Sbjct: 181 REAVDNGMEYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQ 240

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQV 291
           + +         ++ AD A +  + + A +    V +    G  +  +    A  +  + 
Sbjct: 241 IVKNC----RALVLGADCARADLIRQDARHTSVPVTTFALGGDSMADVMAAPANDDHSRF 296

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVVPG--RF 346
           +I ++G    +    L G+F   NA  A  +  A G D   A   + L ++  V    R 
Sbjct: 297 SIVIDGTSIGELSLTLDGDFNYANAAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRM 356

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
           E            VDYAH   S+  +L  +          I ++ G  G++   +R  + 
Sbjct: 357 EHFKDTRSNTIAIVDYAHNYASVTALLDYVDQRYGSEKPEITLITGSAGNKAYDRRAEIV 416

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ 459
             A D  D  ++T ++   E  E++ A++   +           +R EA+ T +    K 
Sbjct: 417 HAAQDRIDHLVLTFEDTDDEPVEQVCADMNDSVTNPQLDVKTILDRAEAVETTVSRDRKD 476

Query: 460 ----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                ++++ GKG+E              D  I+  +  L
Sbjct: 477 PEHLHIILIIGKGNERWFKDHGKHIPYEGDDRIVERVFRL 516


>gi|300776807|ref|ZP_07086665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300502317|gb|EFK33457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 423

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 150/443 (33%), Gaps = 58/443 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR I    IF A  G   +      +AI  GA A++V               +  I
Sbjct: 16  VTIDSRKIAENDIFFAFSGENFNAATLAEKAIDDGALAVIVE-------LPEFENRDKNI 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ-------RSGLSSF 145
             V +T +FL   A     K     + +TG++GK++    +  +          SG  + 
Sbjct: 69  FYVPSTLEFLQQLAIYHRRKLSIPFIGLTGSNGKTTTKELIHAVLSEKFNVQYTSGNLNN 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG   TI                    LS      +  + + A+     +      +  
Sbjct: 129 HIGVPLTI--------------------LSIKPEHEMAVIEMGANHQKEIEFLCTISQPD 168

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN G+ H++     +     K  L++ L       ++  +D      +++  N   
Sbjct: 169 FGYITNFGKAHLEGFGGFEGVIKGKSELYDYLKNNNRTIVVNENDPIQ---LEKTENYPS 225

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + ++ G +    + +     H    V +  +G     +  L GE+   N   AA L +  
Sbjct: 226 K-ITFGKETSNYNFESFSEEHF---VGLIYQG--VKAVSKLTGEYNFTNLCAAASLGLHF 279

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    +   LE       R + V    R   +   Y    +S+   L N  +    + I
Sbjct: 280 GIGFEKIKHALELYTPTNMRSQVVKKEGR-TLVLDTYNANPSSMTASLNNFISFEGSKTI 338

Query: 386 VVFGCGGDRDQGKRPIMG--KIALDLADIAIVT---------DDNPRSEDPEKIRAEIIH 434
           ++       D+ ++      K+A DL    I+T           +   E+  ++   +  
Sbjct: 339 IIGDMLELGDESEKEHQNILKLAQDLHFDEIITVGKHFKAVNSSDLAFENTTELAEYLKQ 398

Query: 435 G---IPGFIEKGNRIEAIRTAIE 454
                   + KG+R  A+   I+
Sbjct: 399 HKIQTENILLKGSRGIALEKIID 421


>gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 456

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 166/447 (37%), Gaps = 51/447 (11%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
             DSR I  G +FV + G + DGH FI  A   GA A           FS  +    P +
Sbjct: 30  EFDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVAT----------FSEKVVEGHPYI 78

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +V++        A+    K   ++ AVTG++GK++    + Q+   + L+    G  +  
Sbjct: 79  LVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGNYNNE 138

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNL 212
                           L              V      H  D H L  +    A   T +
Sbjct: 139 IGLPYTVLHMPEGTDKL--------------VLEMGQDHLGDIHLLSELAHPKAAIVTLI 184

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ + +      K+++ +  +P+    ++ AD      ++         V+  G 
Sbjct: 185 GEAHLEFFKDRSEIAKGKLQIADG-MPEGGLLVVPADP-----IVDAYLPENQTVVRFG- 237

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 +     I  K  +T      +     P+ G++   NA++AA + +  G+  A +
Sbjct: 238 --PDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVALKEGVSEAAI 295

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVF 388
            +  E L +   R E+    S G  I  D Y     ++ +IL+   TI    +GR + V 
Sbjct: 296 RDSFETLQLTRNRTEW-KKASNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVL 354

Query: 389 GCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEI-----IHGIPGF 439
               +  +    +  ++ L L+    D  I    +       ++ +++     ++     
Sbjct: 355 ADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFPLGHVYYFKKT 412

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E+    + ++   E L +QD +++ G
Sbjct: 413 AEEDQFEDMVKQVKESLKEQDQILIKG 439


>gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 458

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 99/462 (21%), Positives = 172/462 (37%), Gaps = 48/462 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+ +++    +   +     VS+D+R +Q G +FVA+ G   DGH F+   +   A  
Sbjct: 6   LAEIASKVG-GELHGGDTVAEGVSTDTRSLQHGQLFVALTGPTYDGHAFVSDDLP--AAG 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS           + +  P ++VD+TR  L   A       P  +LA+TG++GK++V 
Sbjct: 63  VMVSR---------LLPTRLPQVLVDDTRLALGRLARAWRESLPVTVLALTGSNGKTTVK 113

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +    +    G  +                      L    +     V + A+
Sbjct: 114 EMLSAIAREHAPTLATRGNLNN-------------DIGVPLTLLEMARNHRYAVVEMGAN 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            HG   +     +      TN G  H++   + +    AK  ++  L P +  A+I ADD
Sbjct: 161 HHGEIAYLTSLARPDVALITNAGPAHLEGFGSIEGVSRAKGEIYSGLGP-DGVAVINADD 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            Y+        N G RV+S G        +          + + + G+        PG  
Sbjct: 220 IYADYW--YGLNPGRRVISFGL---DHVAEVSGEWQAPGSLRLHMNGRVHALELAFPGRH 274

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNS 368
              NAL AA   +   I    +L  L ++H V GR   V    RGG + +D  Y     S
Sbjct: 275 NALNALAAAAAALGAEIPEEAILRGLARVHPVSGRL--VAVPGRGGALLLDDSYNANPAS 332

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
               L+ +      R +V+   G   D+G+  +  +I     ++ I        E    +
Sbjct: 333 TRAALEVLSGHGGERCMVLGDMGELGDEGET-LHAEIGARARELGI--------EHFHAV 383

Query: 429 RAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQDVLVVAG 466
                H +  F E      ++   I     ML+    ++V G
Sbjct: 384 GPLSAHAVRAFGEGAQHHPDQAALIEALRPMLHAGMTVLVKG 425


>gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 454

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 143/404 (35%), Gaps = 42/404 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              +  +N++  DSR+I  G +F+ + G + DGH FI  A   GA A     A       
Sbjct: 13  DLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVATFSERAI------ 65

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               S  P ++V+N        A     K   +++AVTG++GK+S    ++ +  ++   
Sbjct: 66  ----SGRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKA--- 118

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
                   T  ++  D        I L   + ++       V      H  D   L  I 
Sbjct: 119 ---YKTYKTQGNYNND--------IGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIA 167

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      T +G  H+ Y  +++     KM++ +  +      I   D      ++     
Sbjct: 168 RPHIAVLTLIGEAHLAYFGSREKIAEGKMQIVDG-MDSNGILIAPGDP-----ILDPYLP 221

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V+  G       L        K  +T            PL G++   NA++AA + 
Sbjct: 222 DSQMVIRFG---DHQELVVEDIKERKDSLTFKTNVLPRPVTIPLTGKYNATNAMIAAYVG 278

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
             + +    ++E LE + +   R E++   +    +   Y     ++ +IL+    I   
Sbjct: 279 RLLAVPDEDIIEALEAVKLTRHRTEWIKAANGADLLADVYNANPTAMRLILETFAAIPAN 338

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDN 419
            +G+ I V     +       +  ++         D  +   D+
Sbjct: 339 LNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDD 382


>gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
 gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
          Length = 430

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 143/396 (36%), Gaps = 39/396 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +D+R+I+   +F A+ G   +G+ F  +A+ QGA  +VV     +++         
Sbjct: 14  SGVDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVVDDKKFVKNKE------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V N  + L   A          ILA+TG++GK++    V  +  R       I   
Sbjct: 67  HYILVQNVLESLQKLAIFHRKYLGIPILAITGSNGKTTTKELVHSVLLR---KFKTIATK 123

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSF 209
             +++            I +   L  +       +    ++H L+   L  I     G  
Sbjct: 124 GNLNNH-----------IGVPLTLLSMDDHTEFGIVEMGANHPLEIEFLCTIANPDYGYI 172

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++   + +    AK  L++ L  +     +  DD      ++R H       S
Sbjct: 173 TNFGKAHLEGFGSLEGVVKAKTELYKNLQERHKLIFLNIDDE-----VQRKHENYNHTFS 227

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G   +      V   +        +   + DF   L GE+   N   A  + +   +  
Sbjct: 228 FGESNEA----DVQLSYQSGLANAQLNYNNTDFKSKLTGEYNAKNMAAALCIGLYFKVKF 283

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVV 387
             +   L        R + + T S    I +D Y     S+   L+N + + T+ + I +
Sbjct: 284 EEIQTALSNYSPDNNRSQTLNTASN--TIIMDAYNANPTSMHAALENFKQLKTNKQKIAI 341

Query: 388 FGCGGDRDQGKRPIMGKIAL--DLADIA--IVTDDN 419
            G   +           IA     +D A   +  DN
Sbjct: 342 LGDMFELGSSAVTEHQIIANYVQNSDFAETYLLGDN 377


>gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
          Length = 476

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 91/460 (19%), Positives = 163/460 (35%), Gaps = 55/460 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +QAG +FVA+   + DGH F+ QA+ +GA A +VS           +  + 
Sbjct: 24  TGVSIDTRTLQAGDLFVALTDVR-DGHDFVKQALDKGAAAALVS------HVPPGVPEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V++ +  L         +    ++AVTG+ GK+S    +  +    G +   +   
Sbjct: 77  PLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKTSTKEMLLAMLSDQGRAHASV--- 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ +       V     +H G                
Sbjct: 134 -----------ASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVALI 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++           K  +FE ++P    AI+ AD   S  +M +A +   R ++
Sbjct: 183 TTVAAAHLEAFDDITGIAVEKASIFEGVVP-NGVAILNADVDTSAILMAKAQDCRLRDIT 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G  G    L +     +   V   +      +    PG     NAL A  +  A+  D 
Sbjct: 242 FGEHGYDFKLMRADLQGDTTVVRAEMGEVPILYKINSPGRHFAMNALGAIAVMAALRTDV 301

Query: 330 ALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-----YAHTSNSLEMILKNIRT---- 378
           AL L  L +     GR   E +  +S   R++VD     Y     S+   L+ +      
Sbjct: 302 ALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAEVT 361

Query: 379 -----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
                ++ GR I   G   +    +  +   +A   A   I         D       ++
Sbjct: 362 NDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEI---------DVIHCIGPVM 412

Query: 434 HGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVVAG 466
             +   + +  R        EA       ++  DV++  G
Sbjct: 413 RALYDALPEPQRGMWFEGAEEAATHVKTHIDSGDVVLAKG 452


>gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
 gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
          Length = 470

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 86/422 (20%), Positives = 153/422 (36%), Gaps = 32/422 (7%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
                 Q+    +   +  +   VS+DSR    G +F+AI G++ D H F+PQ   +   
Sbjct: 6   LRAAAAQIPGASVTGDDSVRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVA 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++V+              + P + V +TR+ L   A     +    ++AVTG++GK++V
Sbjct: 66  AVLVARTPE--------NWSVPAIRVADTREALGALARGWRRQFDLPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +  +  ++      ++            I L   L  L +     V    
Sbjct: 118 KEMIASIFAAAVGADARLATAGNFNN-----------DIGLPLTLFRLHAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +  +L  +         N  R+H ++  T +A       +   L P E  A+  A
Sbjct: 167 MNHPGETEQLAKLAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSP-EGTAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDAY+     R    G R++           +  V    + ++++I       D    + 
Sbjct: 226 DDAYASIW--RVAATGNRIIDFALNNAERTTEAAVQGTFDGKRLSIDTPQGRLDVTLQVL 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YA 363
           G    +NAL A    +A G+    +   LE    V GR +          G  +  D Y 
Sbjct: 284 GNHNAHNALAATSAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGSLAGATVIDDTYN 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNP 420
              +S+   +  + +  S R++V+   G   D G    R I         D      D  
Sbjct: 344 ANPDSMRAAIDVLASRESPRVLVMGDMGEVGDNGPVFHREIGAYAKERGVDALYAMGDAS 403

Query: 421 RS 422
           R 
Sbjct: 404 RD 405


>gi|331016730|gb|EGH96786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 456

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 97/466 (20%), Positives = 161/466 (34%), Gaps = 47/466 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL   L    +   +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 7   FSELTVPLDARLVGG-DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKGAVG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSV 129
            +V              +  P LVV +TRK L+   A    G     + AVTG+SGK++V
Sbjct: 66  ALVEHEVEG--------AALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G      G  +                      L          + + A
Sbjct: 118 KEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAVIELGA 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G   + ++  K      TN G  H+      +    AK  + E  +     A++  +
Sbjct: 165 SRVGEIAYTVNLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEG-VEASGTAVLNLE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D       KRA +      ++       H  ++          T++           L G
Sbjct: 224 DKAFPIWRKRAGHRNILTFALADAAADFHAGELSRDARGCPSFTMASPLGSAQVQLNLLG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA    A+G+    ++  L  +  V GR       S G R+  D Y     
Sbjct: 284 THNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRA-VAQIASNGVRVIDDTYNANPG 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +  +   T   ++V+   G      +QG   +    A  ++ +  V         
Sbjct: 343 SINAAVDILTGFTGRTVLVLGDIGELGEWAEQGHHDVGAYAAGKVSALYAVGP------- 395

Query: 425 PEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                  + H +  F E      ++ E I       +    L++ G
Sbjct: 396 ------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum Nigg]
          Length = 450

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 172/475 (36%), Gaps = 52/475 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ K++  L+  + I       +K+  V+ DSR +  G +F A+ GN+  GHLF+ Q
Sbjct: 1   MRPILLKEWSSLLLDIDI---PCSGKKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQ 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A VV+S Y   D+         +L V + R+ L              ++ +TG
Sbjct: 58  AAQSGAVAAVVASDYRGPDY------GLQLLHVADPREALRAAGRTQGALFHGEVIGITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++  SF QQ+                 S F +           L   LS L++ G 
Sbjct: 112 SVGKTTTKSFTQQLL----------------SPFYKVFASPKSYNSQLTLPLSILTADGD 155

Query: 183 THV---SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFEEL 237
                  +  S     +  LD I+   G  T++   H      +  Q     K  L E  
Sbjct: 156 EDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVDKGAQGIAEEKSLLLERC 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++  D ++    MK+   A     S+  +    + + +    + + V IS   
Sbjct: 216 ----GIHLLPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI----HSEGVLISAPD 267

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +     P      N ++A  L     +    + +  + L +   RFE       G R
Sbjct: 268 GDIELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSMRFEQQ--EHNGIR 325

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-----KRPIMGKIALDLAD 411
           I  D Y  + +++   L  +   + G    VF  G   + G         + + A+  A 
Sbjct: 326 IINDAYNASPDAMLAALDAVPIPSEGGK-TVFILGHMAELGRYSDECHIAVARKAVTKAH 384

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +          E    +R  +          G+  E +     ++ + DV+++ G
Sbjct: 385 VVFF-----VGEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRGDVVLLKG 434


>gi|163754139|ref|ZP_02161262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
 gi|161326353|gb|EDP97679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
          Length = 423

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 135/390 (34%), Gaps = 45/390 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +++DSR I    IF A+ G+  +G+ +   A+ +GA   +V     +            
Sbjct: 14  NITTDSRKITPNCIFFALKGDNFNGNKYAKDALEKGAAYAIVDEKEYVTSEQT------- 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGLSS 144
            ++V++  + L   A+    +    I+++TG++GK++    +  +           G  +
Sbjct: 67  -ILVNDALESLQKLANYHRKQLNIPIISLTGSNGKTTTKELINAVLSKKFNTTATKGNLN 125

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG   T+ S   D  +              +   G  H    A    + +        
Sbjct: 126 NHIGVPLTLLSMNSDTEIG-------------IVEMGANHKREIAFLSSIAE-------P 165

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN G+ H++     +     K  L++ L   +    +  DD    + ++R  +A 
Sbjct: 166 DYGYITNFGKAHLEGFGGIEGVIIGKSELYDYLKASDKFIFVNGDDT---KQVERTQDAN 222

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V      G   +   +  +     V+ +V+GK       L G +   N   A  +   
Sbjct: 223 TYVFG----GSDTYDLSIEFLTANPMVSCAVDGKK--IQSQLIGSYNFSNIAAAIAIGTY 276

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             ++S  + E +E       R + +  N+    I   Y     S++  L N   +T    
Sbjct: 277 FKVNSDDIKEAIEAYIPSNNRSQILTKNTNKI-ILDAYNANPTSMKAALDNFSDLTDTSK 335

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           I   G   +     +     I    A + I
Sbjct: 336 IAFLGDMFELGDSAKEEHQFINDYAASLEI 365


>gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
 gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
          Length = 458

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 161/476 (33%), Gaps = 53/476 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L       L+           +   + VS+DSR IQ G +F+A+ G + DGH ++
Sbjct: 5   MRLSELQLPLSGRLV---------GADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V+                P LVV +TR  L    +         + A+
Sbjct: 56  AEVAAKGAVAALVAREVEGAPL--------PQLVVADTRLALGRLGALNREAFKGPVAAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK+SV   +  I + +      +     +++                  L   +  
Sbjct: 108 TGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNN----------DLGAPLTLLELSAEH 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + AS  G   + +  ++      TN G  H+      +    AK  + + L   
Sbjct: 158 RSAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKIVQAKGEILDGL-SA 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEG 297
              A++  DD       +R      R++S G       F                ++   
Sbjct: 217 TGTAVLNRDDKACPIWAERVAGK--RIVSFGLDNPLADFSAGSIAYDQRGCPNFVLTGPL 274

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G   V NAL AA    A+GI +  V+  L+ L  V GR       + G R
Sbjct: 275 GSLRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPVKGR-AVAQMLANGVR 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAI 414
           +  D Y     S+   +  + +     I+V+   G   +  +     +G  A    D   
Sbjct: 334 LIDDSYNANPASICAAIDVLASFAGRTILVLGDMGELGEWAEQGHRDVGAYAAGKVDTLY 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                        +   + H +  F        ++   I +          +++ G
Sbjct: 394 ------------AVGPLMAHAVAAFGQGARHFPDQASLIESLRAEQGSGTTILIKG 437


>gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 459

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 146/396 (36%), Gaps = 33/396 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSAT 85
           R  + VS DSR +    +F+ + G   DGH F+ +A+ +GA A ++     ++ +  +  
Sbjct: 24  RGFDGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQKGAVATLIDQRYPHAGEYVAWC 83

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSS 144
            R     + V +T + L   AS    K P  I + +TG+SGK++V    + +        
Sbjct: 84  TRFGAACIAVHDTLRALQDLASFYCKKFPALIRIGITGSSGKTTVKEMARAVFSERYRVV 143

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIK 203
              G                 S I L ++L ++ +   V    +  +  G  +     + 
Sbjct: 144 ATPGNL--------------NSEIGLPQSLFFVRAEHEVGIFELGMNRRGEMRTLAQILV 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+G  H+    TQQA    K  +F +            DDAY   +   ++  
Sbjct: 190 PHYAIITNVGCAHVGILGTQQAIAEEKKEIFSQFTEHS--VGFVPDDAYRVFL---SNIP 244

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             RV+     G+ +  + +       +V    +G+      PLPG     NAL    L  
Sbjct: 245 YGRVVVYDQGGRGLATEVIDEGLRGSRVL--YQGR--WIRVPLPGVHNAKNALAVIALAA 300

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+ +  +   +E++    GR   V  +     +   Y    +S+   L     I++  
Sbjct: 301 QVGLPAEEIQRGMERVKPPFGRSHVVCASL--TFLLDCYNANPDSMAAALHLCAHISAVS 358

Query: 384 IIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIV 415
            + V G  G+          ++    A   A    V
Sbjct: 359 KVYVLGDMGELGVTAAEAHYRVCVLAAASDARAVYV 394


>gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
 gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
          Length = 473

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 95/447 (21%), Positives = 167/447 (37%), Gaps = 29/447 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ ++ DSR ++ G  F+A+ G + DGH F   AIA GA  ++V+     Q  +    +
Sbjct: 26  RVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIAAGAALVIVTDDLPEQALAFAREA 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              I  V + ++ LS  AS    +   +++ VTG+ GK++      Q+         +  
Sbjct: 86  GCCIARVPDAQQALSALASAWREELSAHVVGVTGSVGKTTTRGLAAQVLS------ARFK 139

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             ST  +F                 L+         V +     G         +     
Sbjct: 140 TESTKGNF-------NNELGLPLTVLTAPKDCEALVVEMGMDGRGQIARLAAVARPERAI 192

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH--NAGCR 266
            TN+G  H++Y  T++    AK  + E L   E  A + AD  ++  +++ A     G R
Sbjct: 193 ITNVGTAHLEYLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIEHARLAERGIR 252

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           V+  G +G    +       + +      +  +G+       L G   V NA  AA + +
Sbjct: 253 VVRFGGEGHASDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQNACGAAAIGL 312

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TS 381
           + G+    V   L       GR   +     G R+  D Y  +  S+   L  + +  TS
Sbjct: 313 SYGMSLPDVCHALAGAQAQAGRQALLRMPE-GYRLLDDAYNASPESMAASLSVLSSFSTS 371

Query: 382 GRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           G  I V       G   D G   +   +A    D  I      R        A +    P
Sbjct: 372 GSRIAVLGDMGELGSASDAGHDSVGRAVAGAKIDALICVGPKSRRIAHAARAAGMD---P 428

Query: 438 GFIEKGNRIEAIRTAIE-MLNKQDVLV 463
             I++ +   A R A+  ++   DV++
Sbjct: 429 ARIQEVDDAGAAREALSRIVRADDVVL 455


>gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 477

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/462 (20%), Positives = 164/462 (35%), Gaps = 57/462 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N VS D+R +Q G +FVA+   + DGH F+ QA+  GA A +V+           +  + 
Sbjct: 24  NGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQALDSGAGAALVT------HVPEGVGEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+L+V++ +  L         +      + AVTG+ GK+S    +  I    G +   + 
Sbjct: 77  PLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVGKTSTKEMLLAIFGDQGKAHASV- 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAG 207
                         +  +   +   L+ +       V     +H G         +  A 
Sbjct: 136 -------------DSYNNHWGVPLTLARMPRDTDYAVIEIGMNHPGEIAPLAKQAQPHAA 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+   H++  +   A    K  +F+ + P    A+I AD  +S  V+ +A   G R 
Sbjct: 183 MVTNVAAVHLEAFKDVAAIAVEKASIFDGMEP-GGVAVINADHDHSDIVLDKALERGLRE 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G +G    L  V            V G    +    PG     NAL A  +  A+G 
Sbjct: 242 TTFGRKGHHYTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALGALAVAEALGA 301

Query: 328 DSALVLEHLEKL-----HVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRT-- 378
           D AL ++ L +        V  +      ++      +D  Y     S+   L+ +    
Sbjct: 302 DRALAVQSLGRWSPYVGRGVREQILLDPVDNHLTLELIDDSYNANPTSMAAALEVLAASE 361

Query: 379 -------ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                  ++ GR I   G   +       +   +A   A          R+ D       
Sbjct: 362 VTHDIGRVSKGRRIAFVGDMKELGPEALALHAGLADLEA---------TRALDVVHCVGP 412

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLN-------KQDVLVVAG 466
           ++      + +  R +   TA EML          DV+++ G
Sbjct: 413 LMKAFYDNLPEHQRGDWTETAEEMLQGLRARLDSGDVVLIKG 454


>gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL N1-067]
          Length = 316

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/340 (20%), Positives = 127/340 (37%), Gaps = 28/340 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+  + +    L    SI    +R+  I  V  D+R I+ G +FV  VGN  DGH F+
Sbjct: 1   MNLKKTVGEVVAML--DSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A                 ++ P+++V++T   L   A +   +    ++A+
Sbjct: 59  GQAREMGAVATFWQKNVP------NPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAI 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I + S    +  G  +                             
Sbjct: 113 TGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDT------------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  +     +      K      TN+G  HI+Y  ++Q    AK+ +   L P 
Sbjct: 160 EVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNPS 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
                      Y + ++    +   R L+ G   +  I+  ++ A         + E  D
Sbjct: 220 GILIY-----PYEETLLLSQIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PD 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +   P+ GE  V+N + A      IGI+   +   L+ +
Sbjct: 274 LEIFVPIIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNM 313


>gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
 gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
          Length = 466

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 140/385 (36%), Gaps = 22/385 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            + + V SDSR ++ G +FVA+ G + D H FI   +A+GA A++VS           + 
Sbjct: 27  VEFSRVHSDSRSVEPGDLFVALKGERFDAHDFIADVVARGAAAVLVSRE---------VD 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  P +V  +TR  L    +    +     +AVTG++GK++V   +  I   +     ++
Sbjct: 78  AGVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEEQRL 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +++                  L   ++  +  + +  +  G   +     +    
Sbjct: 138 ATGGNLNN----------DIGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--KRAHNAGC 265
             TN  R+H ++  + +A  +         LP    A+   D           R      
Sbjct: 188 VITNAQREHQEFMVSVEAVAHEHAAA-IAALPANGVAVYPLDAESGGAYAPVWRNAAGAR 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R LS G   +      V  +   Q + +   G  FD    L GE  V NAL A    +A 
Sbjct: 247 RALSFGTSQRADVHATVTLVDGAQVMQVRAPGHAFDVRLALLGEHNVRNALAAIACALAA 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    +   L     V GR +   T      I   Y    +S+   +  +    + R++
Sbjct: 307 GVHVPAIQRGLAGFQAVKGRLQVKYTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAPRVL 366

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLA 410
           V+   G   DQG        A   A
Sbjct: 367 VLGDMGEVGDQGPAFHQEIGAYAKA 391


>gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
 gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
          Length = 455

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 152/410 (37%), Gaps = 40/410 (9%)

Query: 11  FPELINQLSIFPMQWRERKI----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             E+   L + P    E +       V++D+R +QAG +FVA+VG   DGH F  QA+ +
Sbjct: 8   LGEIAKVLGVAPQACVEIETQAMATGVTTDTRTVQAGELFVALVGETFDGHEFAKQAVEK 67

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +V      +  +       P + V +T             +    ++A+TG+ GK
Sbjct: 68  GAIATIVKKGVFSKTVT------LPRIEVTDTLAAYQTLGQWWRSQCAIPVVAITGSVGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    V     + G                   R    + I + K L  L+++   +  
Sbjct: 122 TTTKELVAAALSQFGTV--------------FKTRANYNNEIGVPKTLLGLTTEH-DYAV 166

Query: 187 VEASSHGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           VE    GL++  L     K      TN+G  HI    ++ A   AK  L  EL P +  A
Sbjct: 167 VEMGMRGLEEIALLTQIAKPTVALITNVGTAHIGRLGSRAAIAQAKCELLREL-PTDGTA 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DDA  + +   A       ++ G +G  +  +   +      V I           
Sbjct: 226 VLNHDDA--RLMSTAARFWSGTQITYGLEGGDVRGQIAGSDIIVDGVKI---------PL 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG     N L A     A+ ++   + +    + +  GR +     +    +   Y  
Sbjct: 275 PLPGRHNALNLLSAIATLKALNLNWQQLSQGFS-VPMPAGRSQRHQLPNDILLLDETYNA 333

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + +    L+ +      R I V G   +       +   +   +AD+A+
Sbjct: 334 GAEATIAALELLADQPGTRHIAVLGTMKELGTQSVDLHRLVGKTVADLAL 383


>gi|325298740|ref|YP_004258657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318293|gb|ADY36184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 428

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 159/436 (36%), Gaps = 38/436 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSRH   G +F+A+ G   +G+ F  QA+AQG    VV      +  S         
Sbjct: 16  VTTDSRHCPQGSMFIALKGETFNGNAFAAQALAQGCRYAVVDEPEYARGES--------Y 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  + L   A+    +    I+ +TGT+GK++    V  +  +     F  G    
Sbjct: 68  ILVDDCLQVLQQLANYHRRQLKTPIIGITGTNGKTTTKELVSSVLSKKYKVLFTQG---- 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L       +  V + A+  G  +  +   +   G  TN+
Sbjct: 124 ------NLNNHIGVPLTL---LRLNKEHEMAVVEMGANHPGEIKALVQIAEPDYGLITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H+    + +     K  L++ L  K  +   I  +++Y   +   AH   C  +  G
Sbjct: 175 GKAHLLGFGSFEGVIKTKGELYDFLREKGNATIFIQNENSYLNAI---AHGLHC--VRYG 229

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    K+ +           E   +     L G + + NAL +  +     +    
Sbjct: 230 QASGLFVSGKLLSCSPFLAFEWMSERNTYPVQTHLIGAYNLDNALASVAVGKYFDVAPED 289

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + E L        R + V T  R   I   Y     S+   L+N R + +   +V+    
Sbjct: 290 ICEALSTYMPQNNRSQLVDT-GRNKLIVDAYNANPTSMMAALENFRQVQAPHKMVIL--- 345

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
                G    +G+ +L+     +   D  R  D   +       +    E  + ++A++ 
Sbjct: 346 -----GDMKELGEASLEEHRKIVGFLDGCRF-DRVMLAGPEFKAVASAYEHFDNVDAVKE 399

Query: 452 AIEMLNK-QDVLVVAG 466
           A+E        +++ G
Sbjct: 400 ALEKSKPVGFTILIKG 415


>gi|297520608|ref|ZP_06938994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 262

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/263 (35%), Positives = 133/263 (50%), Gaps = 7/263 (2%)

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                   TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  FTNL R
Sbjct: 3   GKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSR 62

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSV 270
           DH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A        ++ 
Sbjct: 63  DHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINP 120

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G+++    V    +   +  S    D +    L G F V N L+A    +A+G   A
Sbjct: 121 NCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLA 180

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L+   +L  V GR E V T      + VDYAHT ++LE  L+  R   +G++  VFGC
Sbjct: 181 DLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGC 239

Query: 391 GGDRDQGKRPIMGKIALDLADIA 413
           GGDRD+GKRP+MG IA + AD+A
Sbjct: 240 GGDRDKGKRPLMGAIAEEFADVA 262


>gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
 gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
          Length = 492

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/462 (20%), Positives = 155/462 (33%), Gaps = 53/462 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR + AG +FVA  G   DGH F+PQA A GA   +      L D  A   S  
Sbjct: 29  TSVTTDSREVTAGTLFVAKPGETTDGHAFVPQAAAAGAVLNLTEREV-LDDTGAPYPS-- 85

Query: 91  PILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +VV +  + +   AS +  +    HP  ++AVTG+ GK++    +  I    G +   
Sbjct: 86  --VVVADVVQAMGALASHVLQRLRAAHPVTVVAVTGSVGKTTTKDLLHGIFAAEGPTVA- 142

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                                       +         V + A+  G  ++  + ++   
Sbjct: 143 ------------PRNSYNGEVGVPLTVFTAEQDTEFFVVEMGATHIGNIRYLCEMVRPDV 190

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G+   +G  H       +    AK  + E L P E  A++  DDA  + + +R      R
Sbjct: 191 GAVLCVGSAHAGEFGGVENIARAKGEMVECLAP-EGTAVLNDDDARVRPMRER---TTAR 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQ----------VTISV-EGKDFDFLFPLPGEFQVYNA 315
           V+S G  G+             +            T+   +G  F     L G   V N 
Sbjct: 247 VVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCPSFTLHFPDGSAFPVHSRLIGVHHVTNL 306

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L AA +  A G+    +   LE               S G  +  D Y     S++  L+
Sbjct: 307 LAAASVAWAAGVAPERIAAGLEGTGARSRWRMERTERSDGVTVVNDAYNANPQSMKAALQ 366

Query: 375 NI-------RTITSGRIIVVFGCGG---DRDQGKRPIMGKIALD-LADIAIVTDDNPRSE 423
            +             R I V G      D        +G++ +       +   D  R  
Sbjct: 367 TLAQLGRGDAEHPPRRTIAVIGGMHELGDETISAHADLGQLLVRLNISHVVAVGDLAR-- 424

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            P    A +        +   +   A      +L   D++++
Sbjct: 425 -PVYTAATLEGSWGEEALWVPDAEAAEEHLRAVLRPGDIVLL 465


>gi|149280098|ref|ZP_01886222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
 gi|149229112|gb|EDM34507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
          Length = 433

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 132/384 (34%), Gaps = 24/384 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I    +F A+ G+K + + F  QA+ +GA   ++              ++   
Sbjct: 17  VCTDTRAISKDCLFFALRGDKFNANEFAAQALKEGAAYAIID--------DQQYHTDERC 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +    L   A     +    ++ +TG++GK++    ++ I      +    G  + 
Sbjct: 69  ILVPDVLTALQDLARSHRIELRIPVIGLTGSNGKTTTKELIKAILSEKYRTFATSGNLNN 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                                LS      +  + + A+     +          G  TN+
Sbjct: 129 HIGVPL-------------SILSITDDIEIAVIEMGANHQKEIELLCSIALPEYGLITNV 175

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+D     +     K  L+  L  ++  A I  D+ Y  E+   A      ++  G 
Sbjct: 176 GMAHLDGFGGFEGVKKGKAELYAHLKQQQGKAFINNDNPYLLEMAHTAQ--LSDIVYYGS 233

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +        + +     +++   +G +F     L G +   N L A  +     +    +
Sbjct: 234 ERSNTISGALNSTDPFLELSWQKQGSEFSVGTQLTGAYNFENILAAICIGDFFSLTPEQI 293

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L        R +   T      I   Y    +S+   LKN+ ++ +   +V+ G   
Sbjct: 294 NKGLSGYAPQNNRSQLTKTE-HNTVICDFYNANPSSMNAALKNMDSLHAANKVVIIGDMF 352

Query: 393 DRDQGKRPIMGKIALDLADIAIVT 416
           +          +I L   ++ + T
Sbjct: 353 ELGSESAEQHLQIILQATNMTLDT 376


>gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Oceanobacillus iheyensis HTE831]
 gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15)
           [Oceanobacillus iheyensis HTE831]
          Length = 455

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 168/449 (37%), Gaps = 32/449 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I EV+ D+R   +  +++ IVG + DGH FI  AI  GA A +   +  L    +  
Sbjct: 22  DITIQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKNGAIATLWDKSIPL---PSEW 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P+  V++T   +   A+         ++ VTG++GK++    +  + + S  ++  
Sbjct: 79  DNSFPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTTKDLITSVVKTSYKTTAT 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +             P    L              + +  S  G  +      +   
Sbjct: 139 QGNLNNHIGLPLTILSMQPDTEVL-------------VLEMGMSQFGEIELLSKIAEPDY 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI+   +++    AK+ + E +        ++ DD       +       +
Sbjct: 186 TVITNIGESHIENLGSRKGIAKAKLEIIEGIKSNG---NLFIDDDEPLLAKENIDMDDSQ 242

Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           ++ +G+  +  I++  V    ++    ++    D  +   L GE    NA  A  +  A+
Sbjct: 243 IIGIGFTKESDINISNVKVHPDRTTFEVT----DKPYHVNLLGEHHAKNAAFAISIGKAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GR 383
            I    +     KL V   RFE   T   G  I  D Y  ++ S++  ++ ++ +     
Sbjct: 299 NISHENIQLAFNKLEVTGMRFEL-ETGINGVHIINDAYNASATSMKASIQVVKEMEGFQN 357

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIE 441
            ++V G   +           IA  +     +++     E    I  EI    P      
Sbjct: 358 KVLVLGDILELGTYSEHYHRSIAEVIDSR--ISEIYTYGEQAFYIYDEITKQHPKVNVHY 415

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
              R + + +  E LN Q +++  A +G 
Sbjct: 416 IKQREDVVPSLKEHLNNQTLILFKASRGM 444


>gi|255325348|ref|ZP_05366454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
 gi|255297913|gb|EET77224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
          Length = 509

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 167/515 (32%), Gaps = 83/515 (16%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L   D  E+    S+  +   ++++   +  DSR +  G +F+A+ G + DGH +  +AI
Sbjct: 4   LSIADIAEITGG-SLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAI 62

Query: 65  AQGAEAIVVSSAYSLQ-----------------DFSATIRSNTPILVVDNTRKFLSLFAS 107
            QGA A++ +    +                  D  A     +   VV            
Sbjct: 63  EQGAVAVLAARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTR 122

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           RL  +   +I+ VTG++GK+S    +  I +  G +    G  +                
Sbjct: 123 RLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPYTALRCDEHT 182

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
            +L    + +S++G+ H           +H         G   N+G  H+    +++   
Sbjct: 183 RFLV---AEMSARGIGH----------IRHLTTITAPTVGVVLNVGTAHLGEFGSRENIA 229

Query: 228 NAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY------QGKFIHL 279
            AK  L E L    +   A++ ADD +   V   A     +V+            ++   
Sbjct: 230 QAKGELVEALPSAAEGGVAVLNADDPF---VAGMAPRTSAKVVYYSANKPPASDAQYYAS 286

Query: 280 KKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                   +    +   G D       + G+ QV NAL AA   I  G+D  +V   L  
Sbjct: 287 DIQLDDVARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSG 346

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN----IRTITSGRIIVVF----G 389
                     V T   G     D Y    +S+   +             R I V      
Sbjct: 347 HQNASEHRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGE 406

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDN--------------------PRSEDPEKIR 429
            GG+     R +   ++    D  +   DN                    P  +      
Sbjct: 407 LGGEAVAAHRALGEVLSKYHVDHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAV 466

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +II   P  IE     EA          +DV+++
Sbjct: 467 EDIIRVAPAGIEDWTGREA----------KDVVLI 491


>gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
 gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
          Length = 453

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 164/454 (36%), Gaps = 43/454 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +I EV++D+R + AG +FVA+ G +           A    A  V++       S 
Sbjct: 19  GADCQIIEVTTDTRQVTAGCLFVALKGERF---------DAHAFAADAVAAGAGALLVSK 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV      I +  G   
Sbjct: 70  RLLVDVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMAAAILRECGEVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +      T  +F  D  +           L          + + A+  G   +     + 
Sbjct: 130 Y------TAGNFNNDIGVPL-------TLLRLQPQHDFAVIELGANHIGEIAYTTALTRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 NL   H++   +      AK  +F  L P +  AII AD+          ++  
Sbjct: 177 QTALVNNLAAAHLEGFGSLAGVAQAKGEIFTGL-PADGVAIINADNNDWPHWQSMLNDKT 235

Query: 265 CRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S    +G       V       Q T+           PLPG   V NAL AA L +
Sbjct: 236 VWRFSPQAAEGVDFFASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNVANALAAAALAM 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G     V + L++L  VPGR   +        +   Y     S+    + +  +   R
Sbjct: 296 SVGASLEAVRQGLKQLQGVPGRLFPIALTENKLLLDDSYNANVGSMTAAAQVLAEMPGYR 355

Query: 384 IIVVFGC---GGDRDQGKRPIMGKIALDLADIAI-----------VTDDNPRSEDPEKIR 429
           ++VV      G D ++  R +     L   D  I            +      +D   + 
Sbjct: 356 VMVVGDMAELGADAEECHRQVGEAARLAGIDKVIGIGPLSQALCAASGSGEHFQDKAAVI 415

Query: 430 AEII-----HGIPGFIEKGNRIEAIRTAIEMLNK 458
           A +      H +   + KG+R  A+   +  L +
Sbjct: 416 ARVAELLSEHAVITVLIKGSRSAAMEQVVRALQE 449


>gi|300173742|ref|YP_003772908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888121|emb|CBL92089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 441

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 137/383 (35%), Gaps = 38/383 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S+ +  G +FVA+V +  DGH +I  A+  GA A++V + +        I + 
Sbjct: 22  ITGVAFNSQQVTTGDLFVALVMDN-DGHNYIQNALDNGAAAVLVDNKH-------VINTK 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++VD+T   L         +    I+A+TG++GK++    +  I   +         
Sbjct: 74  IPAIIVDDTLIALQQLGKYQRNQINPTIIAITGSNGKTTTKDMLFSIMATT------YRT 127

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T  +F         + I +   L  +     V  V +     G        ++     
Sbjct: 128 FKTPENF--------NNEIGVPMTLLMMPENTEVLVVELGMDRPGQLTVLSRLVRPDVAM 179

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G  HI++ +T+     AK+ +   L   +    I  D+     + +        + 
Sbjct: 180 ITMIGEAHIEFFKTRANIARAKLEIVSGL-KSDGVLFIPFDEPL---LTEAIVQRQVILF 235

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G             ++   Q  I           PL G + + NAL A    I + ID
Sbjct: 236 GQGVNNIEAFSDHTMFVYQNTQFAI-----------PLIGGYNIMNALAAISAGILLHID 284

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V + L+   +   R E + T      I   Y     ++  +L  ++ I +    VV 
Sbjct: 285 LKKVAKALQTFDLTKNRTERLVTARGVVLISDVYNSNPTAVAAVLATLKAIPAPHKYVVL 344

Query: 389 GCGGDRDQGKRPIMGKIALDLAD 411
           G   +       +   +   + D
Sbjct: 345 GDMLELGDQANKLHANLGQKVLD 367


>gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
 gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
          Length = 478

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/470 (20%), Positives = 173/470 (36%), Gaps = 58/470 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR I  G  + AI G+  DGH F+  A+  G    V++ ++  +        +
Sbjct: 27  VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGVAVIAQSHRAE-----FPDD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVV +    L   A     +    I+AVTG+ GK+S    ++ + Q  G +      
Sbjct: 82  LPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGKTSTKEALRTVLQAQGKTHA---- 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGS 208
                     +  +  +   +  +L+   S     +     +H G  +  +  ++     
Sbjct: 138 ----------SAASFNNHWGVPLSLARCPSSARFAIFEIGMNHAGEIEPLVKLVRPHLAI 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267
            T +   H+++    +A  +AK  +F  L P +  AI+  D++    +  +A  +G  R+
Sbjct: 188 ITTVEPVHLEFFSGIEAIADAKAEIFTGLEP-DGAAILNIDNSQFARLRDKAKASGVSRI 246

Query: 268 LSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++ G   K    L  V        V   +   D  +   +PG     N+L         G
Sbjct: 247 VTFGENAKADARLLDVALHGECSAVHADLLHHDVTYKVGVPGRHMAMNSLAVLAATTLAG 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVD--YAHTSNSLEMILKNIRTI---T 380
            D AL    L +     GR         GG +  +D  Y     S+   +  +       
Sbjct: 307 ADLALSALALAEFRPAAGRGVRQMLELPGGAVTLIDESYNANPASMTAAMNVLGQTAIGP 366

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPR--------------S 422
            GR I V G   +     R + G +A  +A    D+        R              +
Sbjct: 367 RGRRIAVLGDMLELGPKGRELHGGLAASVAANKIDLVFCCGPLMRALWDALPSAKKGGYA 426

Query: 423 EDPEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEM-----LNKQDV 461
           ED  K+ ++++ GI            G+R++ I TA+E       +  D+
Sbjct: 427 EDSAKLESQLVAGIRAGDAIMVKGSLGSRMKLIVTALEKNFPSGADADDL 476


>gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
          Length = 448

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 145/393 (36%), Gaps = 33/393 (8%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + ++   S DSR ++   IF+AI G   DG  +I  AI +G+  I+ SS          
Sbjct: 24  EDEEVFGFSIDSRTLRKNEIFIAIQGENFDGSNYIDVAIKKGSSWIITSSKN-------- 75

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +   + V NT++ L   AS L G+    I+A+TG++GK++    V  I  +    + 
Sbjct: 76  -HKSNRCIYVKNTKETLCKIASYLVGEVSPKIIAITGSNGKTTTKEMVANILYQHYPKNE 134

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKL 204
            +     +++            I L   L  L       V     +H             
Sbjct: 135 ILVTKGNLNN-----------DIGLPLTLFNLKKNHTIVVLEMGMNHQDEITKLCKIAPP 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++   ++     AK  +      K   AI+  DD Y   +  ++    
Sbjct: 184 DIAVITNIGEAHLENFSSKNGIAKAKKEILLG-AKKNGIAILPRDDVYFNYL--KSDCLY 240

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R +S G          + +        ++V+ +  +    L G+  + N   A  +  A
Sbjct: 241 LRCISFGINKNSNIRLDLSSK------VLTVDEEKINIESSLLGKENLMNMAAAVSVANA 294

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           + + +  +++ ++ +  + GR E   T S    I   Y    +S+ M +  +      +I
Sbjct: 295 LELPTETIIKGMKTIDSIEGRLEVKITASNIKIIDDTYNSNPSSMMMAIDVLDQFKQKKI 354

Query: 385 IVVFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           ++V      G    +    I   I     D+ +
Sbjct: 355 LIVGDMAELGPLSKKYHTDIGHYILEKNIDLVM 387


>gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
          Length = 477

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 151/417 (36%), Gaps = 32/417 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            E+   +   P+      +  +S DSR +  G  F AI G+K DGH F   AIA GA  +
Sbjct: 8   QEMTEAMDGRPLGNLPDGVTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAAIATGAALL 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV+ A       A  R   P++VV++    L         +    I+A+TG+ GK+S   
Sbjct: 68  VVAEA----KLPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGKTSSKE 123

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEAS 190
            +++  + SG                  +  +  +   +   L+ + +S       V  +
Sbjct: 124 MLRRALEPSGEVHA--------------SAASFNNHWGVPLTLARMPASAQYGVFEVGMN 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                +  +  ++      T +   H+   +       AK  + E ++ K    ++  D+
Sbjct: 170 HPDEIRPLVKMVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVV-KNGHVLLNRDN 228

Query: 251 AYSKEVMKRAHN-AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                + KRA   +  +VL+ G   K    L     + +   +T  +   D       PG
Sbjct: 229 EKFSWLKKRASELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARIGKDDVVVKIGAPG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVD--YAHT 365
              V NAL   G     G D A     L  +    GR      +  GG  + +D  Y   
Sbjct: 289 RHLVQNALAVLGAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDESYNAN 348

Query: 366 SNSLEMILKNIRTIT---SGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIV 415
             S+   L+ +R       GR I V       G   ++  R +   +    AD+  +
Sbjct: 349 PASMRAALELLRDTPVRLRGRRIAVLGDMLEMGKFAERVHRELAEPVRQAHADMVCL 405


>gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
 gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
          Length = 459

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 157/468 (33%), Gaps = 42/468 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  +      +L+N           + ++ +S+D+R + AG +F+A+ G + D H F+
Sbjct: 4   MSLAQIAQVTDGQLLNCPDAT------QTVSHISTDTRTVAAGALFLALQGERFDAHQFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                      V   A +          + P ++V +TR  L   A+ +  +    I+A+
Sbjct: 58  --------AQAVAKGAVAAVVSRPLADVSIPQILVADTRIALGQIAAWVRAQLDLQIVAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+++      I Q++       G  +      Q     TP   Y       +   
Sbjct: 110 TGSCGKTTLKEMCAAILQQAAPVLATQGNLNNEIGVPQTLLRLTPDDRY------AVVEL 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H    A +  L       +K       N+   H+    + +    AK  +F  L   
Sbjct: 164 GANHPGEIAWTTSL-------VKPDVAVINNVAAAHLAGFGSLRGVAVAKTEIFSGL-SD 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNK-QQVTISVEG 297
              A+I AD  +     +       R  S G +        + +          T+    
Sbjct: 216 SGTAVINADSEFYDWWREIL---SVRTFSFGVENPKADFRAENITQDEQGIAAFTLISPL 272

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D   P+PG   V NAL AA +  ++G+    V   L  +  V GRF     +     
Sbjct: 273 GQIDIQLPIPGLHNVSNALAAAAVTTSLGLSLVQVQSGLANMLPVKGRFCVQKLSDDLTL 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAI 414
           I   Y  +  S+   +  +  +   R++     G    D     R I     L   D   
Sbjct: 333 IDDTYNASVQSVMAAIDTLAVMPGYRVLAFGDMGELGADAADLHRQIGEHARLKKLDAVF 392

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              +  R                 F  K +  +A++T ++      +L
Sbjct: 393 TVGELSRHTAEAA-----AASGQHFANKDSLYQALQTLMQHQRPMTIL 435


>gi|288803774|ref|ZP_06409202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
 gi|288333761|gb|EFC72208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
          Length = 440

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/421 (15%), Positives = 141/421 (33%), Gaps = 42/421 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IFVA+ G   DG+ F   A+ +G    ++      +        +   
Sbjct: 16  VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAK------AGDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    +  +                
Sbjct: 70  ILVDDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEK------------ 117

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +                  L       +  + + AS  G  +  +  ++   G  TN+
Sbjct: 118 -FNVHHTEANYNNDVGVPRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L        +   +    E+ ++   A  R+++ G 
Sbjct: 177 GRAHLQGFGSFEGVKKTKGELYDFLKAHGCLLFLNESNPDLTEMAEQ--RAFDRIITYGQ 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEG--------KDFDFLFPLPGEFQVYNALVAAGLCIA 324
                    V +     +                 ++    L G + + N L A  + + 
Sbjct: 235 DETADVQGYVVSCAPCLKFEWQSSSLNTHQPAPTIYEVQTHLIGSYNLDNMLAAIAIGLH 294

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+    +   LE       R +   T +    I   Y    +S+   ++N + +     
Sbjct: 295 FGVTPQQINYALENYVPHNNRSQLTET-AHNKLIVDAYNANPSSMAAAIENFQLMEVENK 353

Query: 385 IVVFGCGGDRDQGKRPIMGKI-----ALDLADIAIVTD-------DNPRSEDPEKIRAEI 432
           + + G   +          K+     A D+ ++ +V +       D  +  D ++++ EI
Sbjct: 354 MAILGDMRELGDASAEEHQKVVELLKATDIRNVWLVGEEFGKTQTDFLKFRDIDEVKKEI 413

Query: 433 I 433
            
Sbjct: 414 A 414


>gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 455

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 158/474 (33%), Gaps = 52/474 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +KL +L       LI           +   + VS DSR I  G +FVA+ G + DGH ++
Sbjct: 5   LKLSELTSALNARLIAA---------DATFDGVSIDSRAIAPGQLFVALAGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V    +         S  P L+V++TR+ L    +     +   + A+
Sbjct: 56  NEVAAKGAVAALVEREVT--------NSTLPQLLVNDTRQALGQLGALNRAAYGNPVAAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  I +  G      G  +                      L      
Sbjct: 108 TGSSGKTTVKEMLASILRTRGPVLATRGNLNNDLGVPLT-------------LLELAPEH 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + AS  G   + +   K       N G  H+      +    AK  + E L   
Sbjct: 155 SAAVIELGASRLGEIAYTVGMTKPHVAVLNNAGTAHVGEFGGPEKIVEAKGEIIEGL-DA 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD 299
           +  A++  DD   +    RA        ++       +   +           +      
Sbjct: 214 DGVAVLNLDDKAFEIWKTRAGERKVLTFALSNLAANFYASDLDRDARGCPAFNLHSPDGA 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G   V NAL AA    A+G+    ++  L  +  V GR       S G R+ 
Sbjct: 274 ERVQLNLLGTHNVANALAAAAAAHALGVSLPGIVAGLNAVQPVKGR-SVAQLASNGMRVI 332

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVT 416
            D Y    +S+   +  +   +   ++V+   G   +  Q     +G  A    D     
Sbjct: 333 DDTYNANPSSMCAAVDILAGFSGRTVLVLGDIGELGEWAQQGHHDVGAYARGKVDALY-- 390

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAG 466
                      +   + H +  F E       + E I+      +    L++ G
Sbjct: 391 ----------AVGPMMAHAVAAFGEHARHFTTQAELIQALGAEQDPNTTLLIKG 434


>gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
 gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
          Length = 473

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 161/476 (33%), Gaps = 47/476 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +        + +  +   V +DSR ++ G +FVA  G + DGH +   
Sbjct: 1   MIALSLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         AT     P +VVD+    L   A  +  +    ++A+TG
Sbjct: 60  ----------GAVGAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVKRLGTTVIAMTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+  R G + +  G  +            T    +L            
Sbjct: 110 STGKTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTRDTRHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++         G   N+G  HI     ++    AK  + E L P+  
Sbjct: 158 -VLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEAL-PESG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQ-QVTISVEGKDF 300
            A++ ADD   + +  R      RVL  G         + V      + +  +       
Sbjct: 216 LAVLNADDPLVRGMAPRTR---ARVLLFGEADDAEVRAENVTLTDTGRPRFLLRTPTGCG 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  I  
Sbjct: 273 EVTLRLYGEHHVSNALAAAAVAHELGMPAEEIALGLNEARSLSRWRMEVTERPDGVTIVN 332

Query: 361 D-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGG---DRDQGKRPIMGKIA--LD 408
           D Y  + +S+   L+ +  +        GR   V G      D        +G++A  L+
Sbjct: 333 DAYNASPDSVRAALRALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLN 392

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +  V                        +   +   AI      L   DV++V
Sbjct: 393 VSKLVAVGGQEAAWLRMGAYNEG--SWGEESVHVSDTQAAIDLLRGELRPGDVVLV 446


>gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
 gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
          Length = 492

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 153/448 (34%), Gaps = 38/448 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR ++ G +FVA+ G   DGH ++             ++A  +      +    
Sbjct: 36  TGVSIDSRTLRPGDLFVALKGPNFDGHDYVGD------ALAHGAAAALVSRLPGNVPPEA 89

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+T   L              ++AVTG+ GK+     ++      G +    G  
Sbjct: 90  PVLLVDDTLAALEDLGRVARLNARGKVIAVTGSVGKTGTKEALKLCLDARGPTFATQGSL 149

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                 Y                 +  +  G        ++      T
Sbjct: 150 NNHWGVPLSLARFPADAHY-------------GVFELGMNHAGEIGPLSRMVQPDVAIIT 196

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLS 269
            +   H+++  + +   +AK  +FE + P    AI+  D+ +   ++  A   G  R+ S
Sbjct: 197 TVEAVHLEFFASVEGIADAKAEIFEGMTPA-GTAILNRDNPHFARLVAAARTQGLTRIWS 255

Query: 270 VGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G Q G   HL +         VT S+ G+   +   LPG   V N+L       A   D
Sbjct: 256 FGTQEGADAHLLECSLHATSSAVTASIRGERIQYCLSLPGRHHVLNSLAVLLAVSAAEGD 315

Query: 329 SALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHT-----SNSLEMILKNIRTITSG 382
            A     L ++  + GR        ++G    +D ++        +   +L        G
Sbjct: 316 VAAAARQLSQIAPIKGRGLRRRVALAKGSFTVIDESYNASPVSVAAAATVLGKADPGAGG 375

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           R I V G   +       +   +A       AD+      N +      +   +   + G
Sbjct: 376 RRIAVLGDMLELGAQAPSLHAGLADQFRRAGADLVFCCGPNMKF-----LFDRLPAALRG 430

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              + +   A   A + +   DV++V G
Sbjct: 431 RHTEDSAALAPLVA-DAVRAGDVVMVKG 457


>gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
 gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
          Length = 509

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 136/386 (35%), Gaps = 38/386 (9%)

Query: 15  INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           I   S+  +   + ++   V  DSR +  G +FVA+ G + DGH F  +AI QGA A++ 
Sbjct: 12  ITGGSLDGVDDPDERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAEKAIEQGAVAVLA 71

Query: 74  SSAYSLQDFSATIRSNTPI------LVVDN-------TRKFLSLFAS----RLYGKHPEN 116
           +    +       +           +  ++           LS  A     RL  +   +
Sbjct: 72  ARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSDLAREVTSRLAAEQGLD 131

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ VTG++GK+S    +  I +  G +    G  +                 +L    + 
Sbjct: 132 IVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPYTALRCDEHTRFLV---AE 188

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +S++G+ H           +H  +      G   N+G  H+    +++    AK  L E 
Sbjct: 189 MSARGIGH----------IRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIEA 238

Query: 237 L--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ-QV 291
           L        A++ ADD +   +  R         +   Q      +   +      +   
Sbjct: 239 LPAAADGGVAVLNADDPFVSSMAPRTQAKVVYYSANRPQAADAQYYATDIELDDVARPSF 298

Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T    G +       + G+ QV NAL AA   I  G++ A+V   L            V 
Sbjct: 299 TFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPAVVARALSGHQTSSAHRMDVR 358

Query: 351 TNSRGGRIYVD-YAHTSNSLEMILKN 375
           T   G  +  D Y    +S+   +  
Sbjct: 359 TRRDGVTVIDDSYNANPDSMHAAIAA 384


>gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 446

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 159/443 (35%), Gaps = 43/443 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR ++ G IF A  G K DGHL+I QAI++GA   V++             +N P+
Sbjct: 26  ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVITDEN-------YYDANKPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTS 151
           ++V +T   +        GK     + +TG+ GK+S  + +  +  Q+  +        +
Sbjct: 79  VLVKDTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQKLKIYEAFKNFNN 138

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +      + +   +   + +              +  ++ G  +   + ++   G  T 
Sbjct: 139 ELGVAIVTSNIDLGAQYAIFE--------------IGTNNPGEIKSLSEFLQPDVGIITG 184

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  HI    + +     K+ + E  + K+    I      S        N    V   G
Sbjct: 185 VGHSHIGRFGSLKEITKEKLAISEG-VKKDGVLWINDGVDTSYYNFPEGIN----VKKFG 239

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +        +   +  +    ++     + F    P      NAL A  L          
Sbjct: 240 FSKDSDIYIEELNVEKEVNFIVNFNNFRYCFRINHPFSHFAVNALPAIALAFENQFHYEE 299

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L+K   V GR E + T ++   I   Y     ++   ++N+  I + + I + G  
Sbjct: 300 IYRGLDKFVPVEGRGEIIRTQNK-IIINDTYNAGFEAVLSAVENLSKIDAPKKIAILGEM 358

Query: 392 GDRDQGKRPIMGK---------------IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            + D  +  +  +               +     D   + + +   +  E I A+I+ G 
Sbjct: 359 AEIDGFEEKLYSRLKNEVEKRNDIYFYLVGESFKDFQSLENVSYFKDKSELINADILKGD 418

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQ 459
             ++ K +R +     +E L K 
Sbjct: 419 GVYLVKASRSKRFEELVEYLKKG 441


>gi|154488876|ref|ZP_02029725.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
 gi|154083013|gb|EDN82058.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
          Length = 517

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 104/520 (20%), Positives = 204/520 (39%), Gaps = 48/520 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+++I  D    +  L    ++  +   + ++ D+R ++ G  F+   G +     ++  
Sbjct: 18  LREIIRGD----VWTLDPHDIKGFDEPFSAITYDTRKVEPGT-FLCCKG-RFK-AEYLQG 70

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +G  A V  + +S         +  P L+VD+ RK ++L ++  YG+ P++ L V G
Sbjct: 71  IDERGLAAYVSENDFSD-------ATQAPGLIVDDVRKAMALLSAEFYGR-PQDQLKVVG 122

Query: 123 TSGKSSV---ASFVQQICQRSGLSSFQIGPTSTI-----SSFAQDNRLTTPSPIYLAKAL 174
            +G       A   Q +    G S  +    S++          ++ LTTP  +   + +
Sbjct: 123 ITGTKGKTTTAYLTQAMLN--GCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMR 232
                 G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y + K +
Sbjct: 181 REAVDNGMEYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQ 240

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQV 291
           + +         ++ AD A +  + + A +A   V +    G     +    A  +  + 
Sbjct: 241 IVKNC----RALVLGADCARADLIRQDARHASVPVTTFALGGDSTADVMAAPANDDHSRF 296

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVVPG--RF 346
           +I ++G    +    L G+F   N   A  +  A G D   A   + L ++  V    R 
Sbjct: 297 SIVIDGASIGELSLTLDGDFNYANTAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRM 356

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
           E            VDYAH   S+  +L  +          I ++ G  G++   +R  + 
Sbjct: 357 EHFKDTRSNTIAIVDYAHNYASVTALLDYVDQRYGSEKPEITLITGSAGNKAYDRRAEIV 416

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ 459
             A D  D  ++T ++   E  E++ A++   +           +R EA+ T +    K 
Sbjct: 417 HAAQDRIDHLVLTFEDTDDEPVEQVCADMNDSVTNPQLDVKTILDRAEAVETTVSRDRKD 476

Query: 460 ----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                ++++ GKG+E              D  I+  +  L
Sbjct: 477 PEHLHIILIIGKGNERWFKDHGKHIPYEGDDRIVERVFRL 516


>gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 483

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/487 (17%), Positives = 161/487 (33%), Gaps = 49/487 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  ++  + ++   I       R  N VS DSR    G +FVAI G + DGH F+ +   
Sbjct: 4   MSVEEIAKAVDGRLIGDADSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVAKTAE 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAV 120
           QGA   +V                 P +VV +T   L   A     +  E     +I+ +
Sbjct: 63  QGATVAIVDHEVE--------SDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGL 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +    G +   +G                        AL      
Sbjct: 115 TGSVGKTTTKDLLSSLLATVGPTVAPVG-------------SFNNEIGLPLTALRVDEHT 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + AS  G                  +G  H+    +++    AK  + + LLP 
Sbjct: 162 RFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLP- 220

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGK 298
              A++ ADD +   +   A            Q   +    V A    + +   +  +G 
Sbjct: 221 GGTAVLNADDEHVVPMAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGN 280

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR- 357
                  +PG   V NAL AA + +  G+    V   L   H +      + T +R G  
Sbjct: 281 HTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTS 340

Query: 358 -IYVDY--AHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +D       +S++  L  ++   S        + + G   +    +  +   I    
Sbjct: 341 FTLIDDSFNANPDSMKAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYA 400

Query: 410 ADI---AIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLN--KQ 459
           A++   AI+   + + +  + +   +  G             +   A +  +++      
Sbjct: 401 AELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVVDLARNHPD 460

Query: 460 DVLVVAG 466
            V+++ G
Sbjct: 461 AVVLLKG 467


>gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
 gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
          Length = 560

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/560 (17%), Positives = 177/560 (31%), Gaps = 134/560 (23%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQ-----------WRERKINEVSSDSRHIQAGWIFVAIV 50
           K++++   +         IFP +           +    I  V +D+R ++  ++F+  V
Sbjct: 8   KMKNMTLANIAAACGGELIFPAEEPYANGRVKADYERLTIAGVVTDNRQVERDFLFIPFV 67

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G K D H FIPQA  QGA   +     +            P + V+++++ L   A+   
Sbjct: 68  GEKVDAHRFIPQAFEQGAACSLSEEDLTDPVG--------PCIRVESSQRALMDIAAYYR 119

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +    ++ + G+ GK+S    V  +  R            T  +F  +  +        
Sbjct: 120 RQLKLPLVGIIGSVGKTSTKEMVASVLSR------HYSVLKTEGNFNNEIGMPM------ 167

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L       V  V +   + G         +      TN+G  H+++ +T+     +K
Sbjct: 168 -TVLKIRDHHQVAVVEMGIDNFGQMSALAAVARPNIVVITNIGEAHLEFMKTRDGILASK 226

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI----- 285
             +F+ L    +  I+  DD +   + +RA  A      +G        +K         
Sbjct: 227 TEVFDYL-ADGASVILNGDDDHLNCI-RRAGGARIIFYGLGVDSSAAAREKDKDKLARLN 284

Query: 286 -----------------------------------------------HNKQQVTISVEGK 298
                                                                +      
Sbjct: 285 GQIAEHLAKAKDRDGLADGCFDMSAAYTDQERLARETYRAENLSALGMEGMSASFITPEG 344

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           DF+ + P+PGE  VYNAL AA +  ++G+D   +   +E    + GR  F+     G  +
Sbjct: 345 DFEAVIPIPGEHNVYNALAAAAVGQSLGLDLDEIKAGMETASTISGRAHFLHLG--GLTL 402

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT- 416
             D Y    +S+   L  +     GR I V G  G+  +    +  ++    A+  I   
Sbjct: 403 IDDCYNANPSSMRASL-AVLARAKGRRIAVLGDMGELGENAPAMHYELGERAAEEGIDML 461

Query: 417 --------------DDNP------------------RSEDPEKIRAEIIHGIPGFIEKGN 444
                          D                    R E P +I A             +
Sbjct: 462 YAAGALGREIARGASDASLNRREEGAFFAEEGGGAHRREKPMEIYA-----------CPD 510

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
           R   +   +  L + D ++V
Sbjct: 511 RDALLADLLGRLKEGDTVLV 530


>gi|311741525|ref|ZP_07715349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303695|gb|EFQ79774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 509

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/515 (18%), Positives = 167/515 (32%), Gaps = 83/515 (16%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L   D  E+    ++  +   ++++   +  DSR +  G +F+A+ G + DGH +  +AI
Sbjct: 4   LSIADIAEITGG-NLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAI 62

Query: 65  AQGAEAIVVSSAYSLQ-----------------DFSATIRSNTPILVVDNTRKFLSLFAS 107
            QGA A++ +    +                  D  A     +   VV            
Sbjct: 63  EQGAVAVLAARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTR 122

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           RL  +   +I+ VTG++GK+S    +  I +  G +    G  +                
Sbjct: 123 RLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPYTALRCDEHT 182

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
            +L    + +S++G+ H           +H         G   N+G  H+    +++   
Sbjct: 183 RFLV---AEMSARGIGH----------IRHLTTITAPTVGVVLNVGTAHLGEFGSRENIA 229

Query: 228 NAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY------QGKFIHL 279
            AK  L E L    +   A++ ADD +   V   A     +V+            ++   
Sbjct: 230 QAKGELVEALPSAAEGGVAVLNADDPF---VAGMAPRTSAKVVYYSANKPPASDAQYYAS 286

Query: 280 KKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                   +    +   G D       + G+ QV NAL AA   I  G+D  +V   L  
Sbjct: 287 DIQLDDVARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSG 346

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN----IRTITSGRIIVVF----G 389
                     V T   G     D Y    +S+   +             R I V      
Sbjct: 347 HQNASEHRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGE 406

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDN--------------------PRSEDPEKIR 429
            GG+     R +   ++    D  +   DN                    P  +      
Sbjct: 407 LGGEAVAAHRALGEVLSKYHVDHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAV 466

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +II   P  IE     EA          +DV+++
Sbjct: 467 EDIIRVAPAGIEDWTGREA----------KDVVLI 491


>gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
 gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
          Length = 464

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 161/383 (42%), Gaps = 26/383 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +     V +DSR +  G +FVA+ G+  DGH F  QAIAQGA A+++S      D + 
Sbjct: 17  GADVTFTSVGTDSRSVTKGQLFVALKGDNFDGHSFAAQAIAQGAAAVLIS------DRTL 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++   P ++VD+T + L   A+    K    + AVTG++GK++V   +  I + +    
Sbjct: 71  NVQ---PAILVDDTCQSLGELAAYWRSKFDIPLAAVTGSNGKTTVKEMLASILRAACDQP 127

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
             +   +T+ +            I L   L  L+++    V+    +H  +   L  I K
Sbjct: 128 DAV--LATVGNLNNH--------IGLPLTLLKLNARHRYAVAEMGMNHTGEISYLSRIGK 177

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N G  HI    + +A   AK  +FE L   ++ A+I ADD ++   +  A   
Sbjct: 178 PTVALINNAGNAHIGELGSFEAIARAKGEIFEGL-AADATAVINADDVFAPLWLDLAGQR 236

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             ++++ G + K     +     +   + I+          P PG   V NAL A    +
Sbjct: 237 --KIMTFGLKNKADVTAQYQLHASASDIEITTPQGAVKVSLPTPGLHNVMNALAATSTAL 294

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A+G     V   LE    V GR +       G  +  D Y     S+++ +  +  + SG
Sbjct: 295 AMGASLQAVSIGLENYAGVKGRLQ-QKAGLNGALVIDDTYNANPMSMKVAIDVLMAM-SG 352

Query: 383 RIIVVFGCGGDRDQGKRPIMGKI 405
             I+V G  G+       +  +I
Sbjct: 353 EKILVLGDMGELGDNAAEMHAEI 375


>gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
 gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
          Length = 453

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/468 (21%), Positives = 171/468 (36%), Gaps = 47/468 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+++   I      + +I EV +D+R + AG +FVA+ G + D H F          A
Sbjct: 9   LAEILSAELI----GADSQIIEVKTDTRKVTAGCLFVALKGERFDAHDF---------AA 55

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
             V++       S  +  + P LVV +TR  L   A+ +  + P  ++++TG+SGK+SV 
Sbjct: 56  AAVAAGAGALLVSQRLALDAPQLVVADTRLALGQLAAWVRQQVPARVVSLTGSSGKTSVK 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                I    G   +      T  +F  D  +         +    +   G  H+   A 
Sbjct: 116 EMTAAILSECGEVLY------TAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAY 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +  L + +   I  +A +       H++   +      AK  +F  L P +  AII AD+
Sbjct: 170 TSALARPQAALINNLAAA-------HLEGFGSLAGVAQAKGEIFTGL-PTDGVAIINADN 221

Query: 251 AYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                             S     G      +V    N  Q  +       + + PLPG 
Sbjct: 222 NDWPHWQSMLDGKTVWCFSPQATAGVEFFASEVRGDGNGTQFQLHSPFGSAEIVLPLPGR 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL AA L +++G     V + L +L  VPGR   +   +    +   Y     S+
Sbjct: 282 HNVANALAAAALAMSVGASLKAVRQGLSQLQAVPGRMFPIVLAANKLLLDDSYNANVGSM 341

Query: 370 EMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALD-LADIAIVTDDNPR----- 421
               + +  +   R++VV          Q     +G+ A     D  I      R     
Sbjct: 342 TTAAQVLAEMPGYRVMVVGDMDELGAEAQECHRQVGEAARRAGIDKVISVGGLSRVLSVA 401

Query: 422 ------SEDPEKIRAEII-----HGIPGFIEKGNRIEAIRTAIEMLNK 458
                  +D   + A +      H +   + KG+R  A+   +  L +
Sbjct: 402 SGNGEHYQDKAAVIARVAELLAEHEVMTVLIKGSRRAAMEQVVCALQE 449


>gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
 gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
          Length = 472

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/424 (20%), Positives = 151/424 (35%), Gaps = 45/424 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+L       F E++  +    +        +  V +DSR ++ G +FV I G   DGH 
Sbjct: 1   MRLS------FEEIVRAVDGSAVAGAAPCGIVEGVGTDSRAVKPGSLFVCIPGETFDGHD 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117
           F  +AI  GA A++VS                P+++V++T K L   A     +  E  +
Sbjct: 55  FAVKAIEAGAAALLVSR------NPFDAVPPVPLILVEDTVKALGKLAHCWRERLGETRV 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK++V   + Q+  R GL+                 +        +   LS L
Sbjct: 109 IGLTGTAGKTTVKELLAQVLSRRGLT----------------AKTHMNLNNQIGLPLSML 152

Query: 178 SSQGVTHVSVE--ASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           ++ G     V     SH  D   L  I +       N+G  H      +      K +L 
Sbjct: 153 AATGEEAFWVMEAGISHPNDMDELGAILEPDLALILNVGPGHAAGLGDRGTAHY-KSKLL 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L P    AII AD        +          + G Q  +     V A  +K    + 
Sbjct: 212 AHLAP-GGTAIISADYPDLAREARAVRQELVFFSTSGRQVDYRAAYVVPAGEDKGLFRLW 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++G   D   P  G F   N +  A +   +G+ +  +        +   RF     +  
Sbjct: 271 LDGVSIDVEAPFRGAFGAENVIAVAAVAHRLGLGAEEIAAGFAGAALPKQRF---ACSRA 327

Query: 355 GGRIYVDYAHTSNS------LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           G  + +D ++ +N       LE   +         ++ V G  G+           +   
Sbjct: 328 GDWLVIDDSYNANPLSFSRMLEAAAEMAGDHADRPLVCVLGEMGELGSLSEDEHRNLGRL 387

Query: 409 LADI 412
           +ADI
Sbjct: 388 VADI 391


>gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
 gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
          Length = 466

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 174/467 (37%), Gaps = 45/467 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +    +    Q   + +  V +DSR I  G +FVA+ G   DGH F+ +A+  GA A +V
Sbjct: 10  IAATGAELTGQAPAQAMAGVCTDSRTIAPGQLFVALKGENFDGHDFVEKALQAGAAAALV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
              ++         +   +L VD+T K L   A+      P  I+AVTG++GK+S    +
Sbjct: 70  ERGFN------PTAAGQCLLRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMI 123

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            Q+    G           +++                  L+      V    +  ++ G
Sbjct: 124 AQVL---GQRFEVHKTKGNLNNHI----------GLPLTLLALRPEHQVCVAEMGMNAPG 170

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +     +      TN+G  H+    + +A   AK  LF+ L P E+ A +  DD   
Sbjct: 171 EIAYLAAIARPDVAVITNVGPAHLGPLGSIEAVAAAKAELFQALGP-EAVAAVNLDDPLL 229

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQ 311
                +     CRV++ G   K     + V A  ++Q  T+ +  +  +      PG   
Sbjct: 230 APWADKLP---CRVITFGLDPKAQARARDVSAFGSRQAFTMEIGDQPAERVRLAAPGLHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL AA +   +G+++  + + +E      GR E V T      I   Y     S+  
Sbjct: 287 VRNALAAAAVGAGLGLEAWQIKDGVEAFTPTKGRLENVFTKGGPLLIDDTYNANPASVAA 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGK-----RPIMGKIALDLADIAIVTDDNPRSEDPE 426
            L+++  ++          G   + G         +G+ A++     ++           
Sbjct: 347 GLQSLAALSKWGKGHGLIMGDMGELGPEAPRLHRQVGRQAVEFGCKFVL--------AVG 398

Query: 427 KIRAEIIHGIPGFIEKGNRIEA---IRTAIEML----NKQDVLVVAG 466
           ++  E++ G         +  A   +   I+       +   ++V G
Sbjct: 399 QMADEVVAGAREAGLAAPKALAFAEVDQLIDASPRVIGEGWTVLVKG 445


>gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. RCC307]
 gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. RCC307]
          Length = 464

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 162/472 (34%), Gaps = 33/472 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQDL       +  + +             +S+DSR +Q G +F+ + G + DGH F+  
Sbjct: 7   LQDLARLLDAPVQRRSAPADPTTLAWTFEHISTDSRALQPGDLFIPLRGERFDGHDFLDA 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A++ G    +++  ++       +      +VVD+T       A     +    ++AVTG
Sbjct: 67  AVSVGVAGALIARDWA-----GYVPEQLATVVVDDTLSAYQQIALAWRRQLHCPVVAVTG 121

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    ++      G     +G  +      +    +  S   L            
Sbjct: 122 SAGKTTTRELIKACLSPLGAIESSVGNENNDIGVPRTMLRSNSSHAGL------------ 169

Query: 183 THVSVEASSHGL-DQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +E    GL + HRL           TN+G  HI    ++ A   AK  + + L P 
Sbjct: 170 ---VLEMGMRGLGEIHRLSVCAEPDVAVITNIGTAHIGRLGSRAAIAQAKCEITDRLKP- 225

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGK 298
               +I A D   +  + R  +   + +++               A    Q + ++ +G 
Sbjct: 226 SGLLVIPAGDPLLEAEVSRVWSGRVQRVALSDDPLEPGTPAPDWVAQLQGQSIELASQG- 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + PL G     N L+A      +G+ +  + +    L     R   +     G  I
Sbjct: 285 -LKLINPLEGRHNARNFLLALAAAQELGVTAEQLRDLSVSLPGGRARRLRI----NGVNI 339

Query: 359 YV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
               Y  +  ++   L+ ++    G    V G   +       +  ++      + +   
Sbjct: 340 LDETYNASPEAMLASLELLKQQPGGHRYAVVGTMLELGDQSLSLHRQVGEKATALGLDGL 399

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468
               S        +   G+   +   +   A     ++L   D VL+ A +G
Sbjct: 400 VVVASGPEASALMQGAAGLSKLVCVASPEAAAEPLKQLLRPGDHVLLKASRG 451


>gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thiomicrospira crunogena XCL-2]
 gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 474

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 160/407 (39%), Gaps = 36/407 (8%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           D  E +N +    +   E      VS+D+R +++G +++AI G   DGH FI +A+ QGA
Sbjct: 7   DLVEAVNGVLAGELLGDEPVVFTSVSTDTRTLKSGALYIAIKGEHFDGHAFIGEAVRQGA 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKS 127
            A+++S           + +  P ++VD+TR     FA+    +     ++ VTG++GK+
Sbjct: 67  VAVLISEP---------METVVPAVLVDDTRIAFGQFAAWHRQQMSLKGLVGVTGSNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVS 186
           +  + +  I  +           ST  +   D          L + L  LS S     + 
Sbjct: 118 TTKALLAHILSKQAQ------VLSTQGNLNND--------YGLPRTLLELSTSDDYAVIE 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A+      +     K      T     H++   + +     K  + +  + +   A++
Sbjct: 164 MGANHVKEIAYLTQIAKPDVAVITLAAGAHLEGFGSLEGVIETKGEILDG-VCEGGKAVL 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--- 303
             D    +  ++++   G  V++ G Q +F +++       + Q+T +++    +     
Sbjct: 223 NTDSPGFEYWIEKSQQLGLSVITFG-QARFANVQVTDFTQAENQITFTLDLNWQNIRQAE 281

Query: 304 ---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G     NA  A   C+A+G+  + +   L     V GR +      +G  I  
Sbjct: 282 VVTMPVLGFHNAMNAAAATAACLALGLSWSEIYPGLGDFDGVAGRLQQSKLP-QGLLIDD 340

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            Y    +S++  +  +  +  G   V  G   +       +   +A 
Sbjct: 341 SYNANPSSVKAAIDALVQL-PGPSAVCLGGMAELGAESEALHQDVAA 386


>gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington]
 gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl ligase [Rickettsia typhi]
 gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington]
          Length = 448

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 143/383 (37%), Gaps = 26/383 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V  +S+ ++ G +F+A+ GN+ DGH +I  AI +GA A++VS    + D         
Sbjct: 23  NAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++V+++   L   A           +A+TG+ GK+S    ++ + Q   +     G  
Sbjct: 76  -IILVNDSFNALQKMALYKRKNSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +         Y    L               +  G     +  +K      +
Sbjct: 135 NNYLGLLINLASMADDTEYAIFEL-------------GMNHKGEISELVQILKPNIAMIS 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLS 269
           N+   H+++  + +    AK  +F+    K   AII A +    +++    N +   + S
Sbjct: 182 NISEAHLEFFNSIEEIAEAKCEIFKNF-SKNDIAIINASNNCYNKILSILKNLSITNIYS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G       L     +  +  +   +  K  D   P   +    N      +   +G D 
Sbjct: 241 FGRSKASAELIFYKTLGEQVHLKYYINNKFIDITIPFIPKHFANNYTGVLLIIDILGKDI 300

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVF 388
            +   +L  + +  GR E +  N +  R+  D Y  +  S++  L+ ++ + +     + 
Sbjct: 301 EIAANYLADISITKGRGEII--NIQNSRVICDYYNASPQSMKAALEYLKQVPADNKTSII 358

Query: 389 GCGGDRDQGKRPIMGKIALDLAD 411
           G   +     + +  ++   + D
Sbjct: 359 GEMLELGWNSQRLHEELVPYILD 381


>gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 509

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 134/386 (34%), Gaps = 38/386 (9%)

Query: 15  INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           I   S+  +   + ++   V  DSR + +G +FVA+ G + DGH F  +AI QGA A++ 
Sbjct: 12  ITGGSLDSVDDPDERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAEKAIEQGAVAVLA 71

Query: 74  SSAYSLQ-----------------DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           +    +                  D  A     +   V+           SRL  +   +
Sbjct: 72  ARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSNLAREVTSRLAAEQGLD 131

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ VTG++GK+S    +  I +  G +    G  +                 +L    + 
Sbjct: 132 IVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPYTALRCDEHTRFLV---AE 188

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +S++G+ H           +H  +      G   N+G  H+    +++    AK  L E 
Sbjct: 189 MSARGIGH----------IRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIEA 238

Query: 237 L--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ-QV 291
           L        A++ ADD +   +  R         +   Q      +   +      +   
Sbjct: 239 LPAAADGGVAVLNADDPFVASMAPRTQAKVVYYSANRPQAADAQYYATDIELDDVARPSF 298

Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T    G +       + G+ QV NAL AA   I  G++  +    L            V 
Sbjct: 299 TFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPTVAARALSGHQTSSAHRMDVR 358

Query: 351 TNSRGGRIYVD-YAHTSNSLEMILKN 375
           T   G  +  D Y    +S+   +  
Sbjct: 359 TRRDGVTVIDDSYNANPDSMHAAIAA 384


>gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
 gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 448

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 179/477 (37%), Gaps = 59/477 (12%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K    +++++        + +I  V  DSR +Q G +F AI     +G+ +I   + +GA
Sbjct: 22  KILFNILDKIFGIKSVVEKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA 77

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++  +            ++  ++ V++T K +   A +        ++A+TG++GK++
Sbjct: 78  ALVIADNYKG---------NDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTT 128

Query: 129 VASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
               +  +        +  G  +  IG   TI                    L       
Sbjct: 129 TKDMIYSVLSQKYVTAKTMGNLNNHIGVPFTI--------------------LQLDEKCE 168

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  S  G        ++   G  TN+G  H+++ +T++  F AK  L + +  + 
Sbjct: 169 AAVLELGMSGFGEIDLLSSIVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAEN 228

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I++ DD + K++           + VGY+    +  K     ++    +S E ++  
Sbjct: 229 --LIVFGDDPFLKDL---------NGIKVGYENNNNYQIKNFTDSDEG---LSFEMEEKK 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G+    N  +A  +   +G+    +   L+ L + P RF+ +        I   
Sbjct: 275 YTVSLNGKHNCINTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKI-EKENIIYINDA 333

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y  +  S+   L+    + +  + I V G   +  + +      I      + I TD   
Sbjct: 334 YNASPISVSFSLETFDKLYNDALKITVLGDMLELGEKEIEYHENIIEK--ALIIHTDKIY 391

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
              +      ++I G    I      E I+  +E  + +  +++ G +G +   I+ 
Sbjct: 392 LYGERMAKALKVIQGNKEKITHFTNKEDIKNILEKEHGKTAVLLKGSRGMKLEEIIR 448


>gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola]
          Length = 453

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 155/433 (35%), Gaps = 31/433 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +  ++  I+E+  +++ I  G +F+A++G   D H+FI  AI +G  AI+  
Sbjct: 9   IASITNGQLYGKDLLIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDAIKKGCSAIITH 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      I+S+   ++V NT   L   A+ +  +    ILA+TG+ GK++V     
Sbjct: 69  K---------HIKSHISYIIVQNTSFALGQIANWIRNQTNAKILAITGSCGKTTVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I ++ G         STI +   +  +           L          + + A+  G 
Sbjct: 120 SILRKYGN------TISTIGNLNNNIGVPI-------TLLQLNKYHKYAVIELGANQPGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  +  +       N+   H+   ++      AK  +F  L P     II  D  +  
Sbjct: 167 ISYISNMTQPEIILINNIQYSHLQGFKSLLGVSQAKSEIFSGLKP-NGKVIINLDSHHFS 225

Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  K   N      S+   Q        +          +       +   P  G   + 
Sbjct: 226 KWKKNIKNNHVIYFSIKKKQNSNFFSSNITIDSYGTTFVMHTPNGTINISLPFLGYQNIS 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A+ L  A+ I   ++   L    ++  R + +  N     I   Y     S+   +
Sbjct: 286 NALAASALAFALKIPLNIIQIGLADTPIISRRLQSIILNPDKILIDDTYNSNVASMITAI 345

Query: 374 KNIRTITSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           K +  +   +I+V+       +       ++G  A       I +  N  +E       +
Sbjct: 346 KVLEKMPGYKILVIGDMSELGENSFLYHRMIGNAANLSDINKIFSIGNISNE-----ITD 400

Query: 432 IIHGIPGFIEKGN 444
           I H    F+ K +
Sbjct: 401 IFHNGKHFLHKKD 413


>gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
          Length = 453

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 160/455 (35%), Gaps = 49/455 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + +I +   DSR I  G +FV + G + DGH FI  A   GA   +     +      
Sbjct: 21  FEDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHDFIETAFENGAVVTLTEKEVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P ++VD+        A+    K   N+ AVTG++GK++    +  +      + 
Sbjct: 74  ----NHPYILVDDVLSAFQALAAYYLEKTAVNVFAVTGSNGKTTTKDMLAHLLSTRYKTY 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G  +                  L              V      H  D H L  +  
Sbjct: 130 KTQGNYNNEIGLPYTVLHMPDDTEKL--------------VLEMGQDHLGDIHLLSELAH 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      KM++ + +       ++   D     +++    A
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM--ASGSLLLAPADP----IVEAYLPA 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G   +   L+    I  K  +T +    + D   P+ G++   NA++AA + +
Sbjct: 230 DKKVVRFGQGAE---LEITDLIERKDSLTFNANFLEQDLDLPVTGKYNATNAMIAAYVAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-- 380
             G+    +    + L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 287 QEGVSEEQIRLAFQNLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPAN 345

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G+ I V     +       +  ++ L L+   + T      ED  ++        P  
Sbjct: 346 KGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIF-YGEDIAELSQLASQMFPIG 404

Query: 438 ------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    ++    + ++   E L   D +++ G
Sbjct: 405 HVFYFKKTADEDQFEDLVKQVKESLGANDQILLKG 439


>gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 514

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 103/497 (20%), Positives = 174/497 (35%), Gaps = 58/497 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           ++L D+      EL++          +  +   V  DSR++ AG +F+ + G + DGH F
Sbjct: 4   LRLGDIAAITGGELVDGAE------PDTMVTGPVEFDSRNVSAGSLFICLPGARVDGHDF 57

Query: 60  IPQAIAQGAEAIV-----VSSAYSLQDFSATIRSNTP---ILVVDNTRK------FLSLF 105
              A+ QGA A +           + +  A   S++    +L  DNT +       LS  
Sbjct: 58  AGIAVDQGAVACLEGHRTGQPGILVDNSDADELSDSATSYVLEADNTGEGQAVITALSKL 117

Query: 106 ASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           A     K    +   ++ VTG++GK+S    +  + +++G +    G  +          
Sbjct: 118 ARAHTKKAVEENGLTVIGVTGSAGKTSTKDLIASVLRQAGETVAPPGSFNNELGHPYTAL 177

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                  YL   LS             A + G   H         G+  N+G  HI    
Sbjct: 178 KVGEHTTYLVSELS-------------ARAIGNIAHLARIAPPRIGAVLNVGTAHIGEFG 224

Query: 222 TQQAYFNAKMRLFEELLP--KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           +++    AK  L E L P      A++ ADD     V+   +    R+++ G        
Sbjct: 225 SKENIAQAKGELVEALPPAADGGVAVLNADDPL---VIGMRNRTSARIVTFGMDNPATVR 281

Query: 280 KKVCAIH--NKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            +   +    +   T+ +EG K       + G  QVYNAL AA +  A G+D   + + L
Sbjct: 282 AEDVELDAVARAAFTLCIEGEKARRIQLRVFGRHQVYNALAAAAVGHAAGLDCESIADAL 341

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG----RIIVVFGCG 391
            +          V T + G  +  D Y    +S+   +  +    SG        V G  
Sbjct: 342 SEHVSSSEYRMDVRTRADGVTVINDSYNANPDSMRAGIDALAFTASGREDCHSWAVLGSM 401

Query: 392 GDRDQGKRPIMGKIAL----DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           G+           +A        D  +   DN        +  E               E
Sbjct: 402 GELGDDSLTEHAALAEVLYNRHVDNLVAVGDNTAM---GALALEARRYGVNTEVVSTTQE 458

Query: 448 AIRTAIEMLNKQDVLVV 464
           A    +  L   DV++V
Sbjct: 459 AADIVLRHLKPGDVVLV 475


>gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
 gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
          Length = 445

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 168/443 (37%), Gaps = 41/443 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
                + DSR +Q+G +F+A+    +DGH +I  A  +GA   +V    +  D    I +
Sbjct: 26  TFAGFAIDSRRVQSGELFIALATASDDGHAYIADACRKGAAGALVHQLPA--DHQQLIDA 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +LVV +T   L++ A+    +    ++AVTG+SGK++V++ ++ +   S       G
Sbjct: 84  GHALLVVPDTLAALAILAANWRQQWEFPVVAVTGSSGKTTVSACLRTLFPTSA------G 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            T   ++          +P          +   +    +  S  G      + ++   G 
Sbjct: 138 TTGNYNNHIGLPLSMLGTP----------ADAAIGVFELGMSGSGEIDALAELLQPQIGL 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI    +  A   AK+ L                D   +E++ RA      VL
Sbjct: 188 ITNVGSAHIGKLGSFAAILEAKLELARHC-------SCLIVDGDGQELLDRARQRHQDVL 240

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIA 324
           SVG+        +   +  +    + +             P   +F V N+L+A    + 
Sbjct: 241 SVGFTAGCQVFPQSMELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVKNSLLAIAAGLK 300

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+D A +   L ++ + P R+E          I+  Y     SL   L++  +   G  
Sbjct: 301 LGLDQAALQAGLRRVQLPPLRWEL-HRRGGNTYIFDCYNSNPGSLRAALEDF-SHYPGYR 358

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           + V G   +          K+A     D+ +   D  R    +++ A+I    P   +  
Sbjct: 359 VAVLGEMRELGAFSEREHRKVASAINCDLVLTYGDEARFL-ADELGADIATHCPTLEDVV 417

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
            R+   + A        V++V G
Sbjct: 418 ARLANCQNA--------VVLVKG 432


>gi|306827070|ref|ZP_07460368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304430816|gb|EFM33827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 455

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 81/431 (18%), Positives = 146/431 (33%), Gaps = 54/431 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G  +                             
Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPNDT------------- 152

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D   L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 153 -EKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MD 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                I   D   D Y  E           V+  G       L        K  +T +  
Sbjct: 211 SNGILIAPGDSIIDPYLPE--------NQMVIRFG---DHQELNVTDIREEKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++E LE + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM----GKIALD 408
            I  D Y     ++ +IL+    I     G+ I V     +       +      +++ D
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPD 378

Query: 409 LADIAIVTDDN 419
             D  +   D+
Sbjct: 379 RIDQLVFYGDD 389


>gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
 gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
          Length = 477

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/470 (19%), Positives = 163/470 (34%), Gaps = 37/470 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA  +
Sbjct: 8   SDLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAALL 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS A       A  R   P++VVD+  + +         +    I+AVTG+ GK++   
Sbjct: 68  VVSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTTKE 123

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++ +    G     +               +  +   +   L+ +       V     +
Sbjct: 124 MLRHVLSPLGRVHASV--------------ASFNNHWGVPLTLARMPETTDFGVFEIGMN 169

Query: 192 H-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H G        ++      T++   H+    +      AK  +FE ++     A+I  D 
Sbjct: 170 HAGEILPLTRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVV-NGGHAVINRDS 228

Query: 251 AYSKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A    + + A  AG   V S G   +    L +         +   + G+  +     PG
Sbjct: 229 AQYDLLERAAAAAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYVDYAHT 365
                NAL A       G D+  V      +    G   R            I   Y   
Sbjct: 289 RHIAENALAAIAAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNAN 348

Query: 366 SNSLEMI---LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+      L++      GR I V G   +  +    +   +A  + +  I        
Sbjct: 349 PASMRAAISLLRDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGP 408

Query: 423 EDPEKIRAEIIHGIPGFIEKGNR---IEAIRTAIEMLNKQDVLVV-AGKG 468
           E      A +   +P  +   +R    +    A+  ++  DV++V + KG
Sbjct: 409 E-----MAHLRDALPPEVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKG 453


>gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 463

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 176/482 (36%), Gaps = 59/482 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                   TP L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGTPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPDD 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D   L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MN 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +   I   D   D Y  E           V+  G Q +   +       +K  +T +  
Sbjct: 211 SDGILIAPGDPIIDPYLPE--------NQMVIRFGNQQE---IDVTGIQEDKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD---- 408
            I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++       
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSG 378

Query: 409 LADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
             D  +   D+         +   AE +H      E+ ++ EA+   ++ +LN  D +++
Sbjct: 379 NIDQLVFYGDHIKELARLASQVYPAEQVHYFLK-TEQEDQFEAMAQYVQNILNPFDQILL 437

Query: 465 AG 466
            G
Sbjct: 438 KG 439


>gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
 gi|167654405|gb|EDR98534.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
          Length = 451

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 172/482 (35%), Gaps = 47/482 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +QD++      L+   +  P       IN +S+DSR +    +FV IVG + + H F+
Sbjct: 4   MTIQDILAATGGTLLCGDASMP-------INRLSTDSRDVGPHTLFVPIVGERVNAHKFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  G  A +       +          PI+ V +T K +   AS    K    I+ +
Sbjct: 57  ESALKDG-GASLTQEHEQAEGPH-------PIIKVPDTLKAMQQIASFYRNKMSLPIIGI 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  + +       +     T+ +           P+ L +     S  
Sbjct: 109 TGSVGKTTTREMIAHVLK------GKYRVFETVGN----QNSQVGVPLTLDRL---TSRD 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S  G      + I+  A   TN+G  HI+   ++      K+ + +  LP+
Sbjct: 156 QIGVLEMGMSEPGQITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDI-QNGLPE 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
                +  D+   ++ +    +        G+        +    I+ +   T   E   
Sbjct: 215 NGVLYLNGDNDMIRKHIGYVTHPYEF---FGFSKDCSYRAEDSKEINGQTHFTFVHEDMR 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              +  + G   V NAL A  L +A  +    +   L        R   +     G  + 
Sbjct: 272 EPVILNVLGNHNVSNALAAIALGLAYDVPMETIKRQLATFSG--QRQNILKI--HGYTVI 327

Query: 360 VD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIA--LDLADI--A 413
            D Y  + +S++  LK +      GR + V     +          ++   L  ADI   
Sbjct: 328 DDAYNASPDSMKAGLKILSDYQDSGRKVAVLSDMLELGPDSPDYHREVGEFLGTADITDL 387

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETV 472
            +T    + E  E  + + +     +    +  E I    + L + DV+++ A  G +  
Sbjct: 388 YITGTLSK-EYAEAAQKKNLSLKTKWFSSND--ELISYLKDYLKEHDVVLIKASNGMKLY 444

Query: 473 HI 474
            +
Sbjct: 445 EV 446


>gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 445

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 158/459 (34%), Gaps = 44/459 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL   L        + ++   S DSR +  G +F A+ G + DGH F+  A+ +GA   V
Sbjct: 5   ELAKVLRGELRGDPQARVEGFSIDSRQVGEGDVFFALKGERHDGHDFVTDAVDRGAVGCV 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V          +        + V +T++ L   A    G     ++ V G+ GK++    
Sbjct: 65  VERDVEHAGKFS--------IKVSSTQEALRELALYRRGIFRGEVVGVAGSVGKTTTKEL 116

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +   +  S    G    ++S      +    P+ +  A+  L           AS+ 
Sbjct: 117 IHHLLSNAAASFRSEG---NLNSQIGLPLVVCNMPLEVDYAVLEL----------GASAV 163

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +  ++  +      T LG +H++   T +        +F          I +     
Sbjct: 164 GDVERLVEVAQPKVRVITALGEEHLESFGTLEDVVKGNGEIFRGFTEDSRAVIPH----- 218

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               ++       RV + G +G  ++  KV       +     EG    F  PL     V
Sbjct: 219 --YALEYYDLPRERVTTFG-EGGDLNAGKVRLSLKGTEFEFWGEG----FSVPLLSRGVV 271

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G+  ++G D     E L+      GR   +        +   Y     S+   
Sbjct: 272 QNVLAAFGVLTSLGYDPRDFREALKSFTPPQGRMNLLNF-GNFFVVDDTYNANPPSVRNA 330

Query: 373 LKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           L  + ++ +    V     +   G +  +    +    A    D+ I        E+ ++
Sbjct: 331 LTTLASLQTTSKKVAVLGDMLELGVESGRYHAEVGKLGAELGIDVIIF-----HGEESKR 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              E I      +    + + +   ++ +  +++++V G
Sbjct: 386 SYEECIKHGGNALFCDKKEDIVDELLKYMRDKNIILVKG 424


>gi|139473556|ref|YP_001128272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|134271803|emb|CAM30036.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 463

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/482 (18%), Positives = 175/482 (36%), Gaps = 59/482 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPDD 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D   L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MN 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +   I   D   D Y  E           V+  G Q +   +       +K  +T +  
Sbjct: 211 SDGILIAPGDPIIDPYLPE--------NQMVIRFGNQQE---IDVTGIQEDKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD---- 408
            I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++       
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSG 378

Query: 409 LADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
             D  +   D+         +   AE +H      E+ ++ EA+   ++ +LN  D +++
Sbjct: 379 NIDQLVFYGDHIKELARLASQVYSAEQVHYFLK-TEQEDQFEAMAQYVQNILNPFDQILL 437

Query: 465 AG 466
            G
Sbjct: 438 KG 439


>gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 428

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 179/477 (37%), Gaps = 59/477 (12%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K    +++++        + +I  V  DSR +Q G +F AI     +G+ +I   + +GA
Sbjct: 2   KILFNILDKIFGIKSVVEKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA 57

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++  +            ++  ++ V++T K +   A +        ++A+TG++GK++
Sbjct: 58  ALVIADNYKG---------NDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTT 108

Query: 129 VASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
               +  +        +  G  +  IG   TI                    L       
Sbjct: 109 TKDMIYSVLSQKYVTAKTMGNLNNHIGVPFTI--------------------LQLDEKCE 148

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  S  G        ++   G  TN+G  H+++ +T++  F AK  L + +  + 
Sbjct: 149 AAVLELGMSGFGEIDLLSSIVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAEN 208

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I++ DD + K++           + VGY+    +  K     ++    +S E ++  
Sbjct: 209 --LIVFGDDPFLKDL---------NGIKVGYENNNNYQIKNFTDSDEG---LSFEMEEKK 254

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G+    N  +A  +   +G+    +   L+ L + P RF+ +        I   
Sbjct: 255 YTVSLNGKHNCINTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKI-EKENIIYINDA 313

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y  +  S+   L+    + +  + I V G   +  + +      I      + I TD   
Sbjct: 314 YNASPISVSFSLETFDKLYNDALKITVLGDMLELGEKEIEYHENIIEK--ALIIHTDKIY 371

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
              +      ++I G    I      E I+  +E  + +  +++ G +G +   I+ 
Sbjct: 372 LYGERMAKALKVIQGNKEKITHFTNKEDIKNILEKEHGKTAVLLKGSRGMKLEEIIR 428


>gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 463

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 166/475 (34%), Gaps = 50/475 (10%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   +      E ++   V  DSR I+ G +FVA  G   DGH F   
Sbjct: 1   MIAMSLAEIAEAVGGRLSDTANPETRVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVT 121
                      + A        +   + P ++VD+ +      A  +  + PE  I+ VT
Sbjct: 60  ----------AAVADGAVAALVSREVDAPSILVDDVQLAFGKLARAVVDRLPELKIIGVT 109

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    + ++C+  G +    G  +              +  YL    S      
Sbjct: 110 GSAGKTSTKDVMAELCRALGPTVAPEGTLNNEIGLPYTVLKVDETTRYLVLEYS------ 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                  A   G   +             N+G  H+    T      AK  L E + P  
Sbjct: 164 -------ARGIGHIDYLCGIAPPGIAVVINVGTAHMGEFGTVDGIARAKGELAEAVAP-G 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              I+ ADDA           A  RV++ G  +   I    V +   + + T+       
Sbjct: 216 GVVILNADDARV---AAMRDRARARVVTFGEAESADIRATDVVSEAGQPRFTLHTPNGSA 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V N L AA + + +G+ +  +   +     +  R   V T + G  +  
Sbjct: 273 PVALKLYGAHHVSNTLAAAAVAVELGMAAEAIASVVSGPLSLSPRRMDVFTRADGTTVID 332

Query: 361 D-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIV 415
           D Y    +S+   +  +  +    R I V G      D  +     +G++A    DI IV
Sbjct: 333 DSYNANPSSMAAAINALADLGKESRKIAVLGYMAELGDETEAAHLQVGELAARN-DIDIV 391

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAG 466
                     E++ A I  G            ++ EAI    E+L+  DV++V G
Sbjct: 392 IS-------VEEVAAAIAEGAGLAGSIAYGVDDQAEAIAKLDELLDVGDVVLVKG 439


>gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
 gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
          Length = 465

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 165/482 (34%), Gaps = 66/482 (13%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  I+ ++ DSR ++ G ++V ++G   DGH F  Q++A GA   +      + D  A 
Sbjct: 13  SQIAISGITKDSRAVEPGQLYVPLIGENFDGHEFAAQSLAAGAAGSLWEEGCPVPDELA- 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------Q 138
                P+++V +T   L   AS    +    I+ +TG++GK++       +        +
Sbjct: 72  ---EAPLVLVPDTLSALQRLASAYREELNVRIVGITGSNGKTTTKDLTAAVLGTIYRVHK 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G  +  IG   TI                    L    +     + +  S  G  +  
Sbjct: 129 TAGNLNNHIGVPLTI--------------------LQLDETIETAVLEMGMSDFGEIELL 168

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-VM 257
                  A   TN+G  H+    ++     AK+ +   LLP     +   D+   +E + 
Sbjct: 169 STIASPDAAIITNVGDAHMLQLGSRAGIAEAKLEIVAGLLP-GGALVFNGDEPLLRERLA 227

Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFD-------FLFPLPGE 309
           +     G  ++  G           V    +     +       +          P+PG 
Sbjct: 228 QIELPEGTELVPFGAAADCQWSASNVQIGSDASAFDVVSPLLSAEEAEQLRGITLPVPGA 287

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL A  +    G+ +A + + L  + +   R + V     G +I  D Y     +
Sbjct: 288 HNVMNALAAIAVAYRFGVPAAQIRDGLATVTMTGMRIQPVDA-FNGAKILNDAYNANPTA 346

Query: 369 LEMILKNIRTITS-GRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   +  +  +T   R  VV     +    +      +G         A++T        
Sbjct: 347 VRAAVDLVAELTGYRRKWVVLADMLELGPEEADLHRGIGAYVTPEKADAVLTW------- 399

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRT----------AIEMLNKQDVLVVAG-KGHETVH 473
              +   I  G     E   R + +R             E L+  D+++V G +G     
Sbjct: 400 -GPLAQYIADGAAVAFEAAGRADDVRHFEDKEQLTAWLREQLHADDLVLVKGSRGMRMEQ 458

Query: 474 IV 475
           +V
Sbjct: 459 VV 460


>gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
          Length = 478

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 141/386 (36%), Gaps = 27/386 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S DSR I  G  + AI G+  DGH F+  A+  G    V++ +       A    +
Sbjct: 27  INGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGLAVIAQSQR-----AKFSGD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVV +    L   A     +    I+AVTG+ GK+S    ++ + Q  G +      
Sbjct: 82  LPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTSTKEALRTVLQAQGATH----- 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +S+ + +N    P  +      +  +        +  +  G  +  +  ++      
Sbjct: 137 ---VSAASFNNHWGVPLSLARCPQDAKFA-----VFEIGMNHAGEIEPLVKLVRPHVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVL 268
           T +   H+++    +A  +AK  +F  L P    AI+  D++    + +RA      R++
Sbjct: 189 TTVEPVHLEFFSGIEAIADAKAEIFTGLEP-GGAAILNRDNSQFARLAERAKACGVARIV 247

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G  +     L  V        V   V   D  +   + G     N+L        +G 
Sbjct: 248 TFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLAASTLVGG 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVD--YAHTSNSLEMILKNIRTI---TS 381
           D AL    L       GR         GG    +D  Y     S+   +  +  +     
Sbjct: 308 DLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLGRVAIGPQ 367

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIAL 407
           GR I V G   +     R +   +A 
Sbjct: 368 GRRIAVLGDMLELGPQGRELHRGLAA 393


>gi|291457655|ref|ZP_06597045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380708|gb|EFE88226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
          Length = 515

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 111/496 (22%), Positives = 195/496 (39%), Gaps = 38/496 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +     ++ D+R +  G + +   G +     ++      G  A +  + YS    
Sbjct: 34  LAGADEPFTAITYDTRKVTPGTL-LCCKG-RFK-ADYLTDIDQAGLAAYMAETEYSA--- 87

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
                +  P L+V++ RK +SL ++  YG+  + +  + +TGT GK++ A FVQ +    
Sbjct: 88  ----VTRAPGLIVNDARKAMSLLSAEFYGRPQDELTVIGITGTKGKTTTAYFVQAVLNAY 143

Query: 141 GLSSFQIGP---TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                 +              ++ LTTP  +   + +   ++ G+ ++ +E SS      
Sbjct: 144 SGGRAALFSSVDNCLDGHTYAESDLTTPESMDAFRMMREAANNGMRYLVMEVSSQAYKVE 203

Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           R+ G+   AG+F N+  DHI    H T + Y   K     ++       ++ AD  ++  
Sbjct: 204 RVYGLTFDAGAFLNISPDHISAIEHPTFEDYLYCK----RQITHNCRTLVLGADCDHADL 259

Query: 256 VMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQ 311
           + + A  +   V +           H   V             +GK   DF   L GEF 
Sbjct: 260 IRQDAQASNVPVTTFALHAADGHGTHADFVALPDASSGYLFQEQGKAIGDFSLELEGEFN 319

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A  L  A+G+ +    E    L  V          S     YVDYAH   S + 
Sbjct: 320 AANAAAAIALSRAVGVPAG--SEAFRALEHVHIPGRMEHYESGNMVAYVDYAHNYVSTKT 377

Query: 372 ILKN---IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           + +         + R++VV G  GD+   +R  + K A D AD  I+T ++   E    I
Sbjct: 378 LAEFVTHKYADRNPRVVVVTGSVGDKAVDRREGIIKGAQDYADRIILTAEDTVHERMIDI 437

Query: 429 RAEIIHGIPGFIEKG----NRIEAIRTAIE----MLNKQDVLVVAGKGHETVHIVTNGEK 480
             E+   I           +R +AI  A+E      ++  +L+V GKG E    V     
Sbjct: 438 LHEMQGYITNPRVVSDIELDRAKAIEKAVEDAHAHADRLTILLVIGKGEERWIKVDGKHA 497

Query: 481 KMSVDCDIIREILGLI 496
               D  +++ + GL+
Sbjct: 498 PYEGDDHVVKRLFGLL 513


>gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG]
 gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF]
 gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
 gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
          Length = 473

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 162/476 (34%), Gaps = 47/476 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +        + +  +   V +DSR ++ G +FVA  G + DGH +   
Sbjct: 1   MIALSLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       AT     P +VVD+    L   A  +  +    ++A+TG
Sbjct: 60  ----------GAVAAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVERLGTAVIAMTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+  R G + +  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTEETRHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++         G   N+G  HI     ++    AK  + E L P+  
Sbjct: 158 -VLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEAL-PESG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQ-QVTISVEGKDF 300
            A++ ADD   + +  R      RVL  G         + V      + +  +       
Sbjct: 216 LAVLNADDPLVRGMAPRTR---ARVLLFGEADDAEVRAENVTLTDTGRPRFLLRTPTGCG 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  I  
Sbjct: 273 EVTLRLYGEHHVSNALAAAAVAHELGMPAEEIALGLSEARSLSRWRMEVTERPDGVTIVN 332

Query: 361 D-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGG---DRDQGKRPIMGKIA--LD 408
           D Y  + +S+   L+ +  +        GR   V G      D        +G++A  L+
Sbjct: 333 DAYNASPDSVRAALRALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLN 392

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +  V                        +   +   AI      L   DV++V
Sbjct: 393 VSKLVAVGGQEAAWLRMGAYNEG--SWGEESVHVSDTQAAIDLLRGELRPGDVVLV 446


>gi|118473094|ref|YP_888508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118174381|gb|ABK75277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 509

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/507 (16%), Positives = 151/507 (29%), Gaps = 72/507 (14%)

Query: 3   LQDLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + D+      E++      I P Q     +   V  DSR +  G +F+A+ G + DGH F
Sbjct: 1   MIDMTIARIAEIVGGELADITPEQAAATHVTGTVEFDSRAVGPGGLFLALPGARSDGHDF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------------- 103
              A+  GA A++ +    +               VD+    L                 
Sbjct: 61  AAAAVQSGAVAVLAARPVGVPAIVVRPDGG-----VDSASGALEHDTDGSGAAVLAALAR 115

Query: 104 --LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
                +         I+ VTG+SGK+S    +  +    G      G  +          
Sbjct: 116 LAAAVANELAADGLKIIGVTGSSGKTSTKDLLAAVLAPLGEVVAPPGSFNNELGHPWTVL 175

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
             T    +L              + + A   G                 N+G  H+    
Sbjct: 176 RATRDTDFL-------------VLEMSARHPGNIAALAAIAPPSVAVVLNVGTAHLGEFG 222

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLK 280
           +++A    K  L + + P     I+ ADD     + ++      R+    G         
Sbjct: 223 SREAIAKTKAELPQAVGP-SGVVILNADDIAVAAMAEQTDARVVRISRDPGSDIDVWAGP 281

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                  + + T+     + D    + G+ QV NAL AA + +  G     V + L    
Sbjct: 282 VTLDELARPRFTLHTRDGEVDVNLAVHGDHQVSNALCAAAVALECGATPQQVADALAAAG 341

Query: 341 VVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT----------SGRIIVVFG 389
                   V T + G  +  D Y    +S+   LK +  +             R   V G
Sbjct: 342 PASRHRMQVSTRADGVTVINDAYNANPDSMRAGLKALAWMARQTAGGQPGGKRRSWAVLG 401

Query: 390 CGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHGI-------P 437
              +           I      LD++ + +V           +    + HG         
Sbjct: 402 EMAELGDDAITEHDAIGRFAVRLDVSRLLVVGS--------GRAMNAMHHGAVMEGSWGS 453

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +   A+    + L   DV++V
Sbjct: 454 ESTMVADADAALTVLRDELQPGDVVLV 480


>gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 486

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 169/451 (37%), Gaps = 43/451 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S D+R ++   +F AI G+  DGH ++P A A+GA A VV  A++ +     + ++ 
Sbjct: 39  RGISIDTRTLREDDLFFAIKGDNSDGHDYVPAAFAKGAMAAVVDEAHADR-----LAAHG 93

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+ VV      L         +    ++AVTG+ GK+S    ++ +  + G     +   
Sbjct: 94  PLYVVHEVLPALERLGQAARRRVEARVVAVTGSVGKTSTKEALRLVLTQGGSVHASV--- 150

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ +       +     +H G     +  ++      
Sbjct: 151 -----------ASYNNHWGVPLTLARMPRDARFGIFEIGMNHPGEITPLVGMVRPHVAII 199

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H++Y +  +A  +AK  +F  L+P    AII+ D    + + + A ++   ++ 
Sbjct: 200 TTVAPVHLEYFENVEAIADAKAEIFSGLVP-GGVAIIHRDIPQFERLAEAARHSPAGLIA 258

Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S G ++     L  +    +   V  S++G+   +    PG     N+L       A G+
Sbjct: 259 SFGTHEKADARLLDLTPSSDHSMVKASIQGETLTYRLGAPGRHFAENSLAVLLAAKACGV 318

Query: 328 DSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTIT---S 381
                   L       GR  + V     G    +D  Y     S+   L+   T+     
Sbjct: 319 PLEDAAAVLAFCAPQAGRGQQLVLEAGDGPFRLIDESYNANPASMRAALEMAGTLPLEGV 378

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           GR I + G   +       +  ++A  L  A   +V    P       +   +   +P  
Sbjct: 379 GRRIAILGDMLELGPQAPDLHAQLADILREACFDLVFAAGP-------LMRHLYDALPSG 431

Query: 440 IEKGNRIEAIRTAI----EMLNKQDVLVVAG 466
           +    R +A    +      + + D+++V G
Sbjct: 432 LRGEWRAKA-EDLVPIVGATVQRNDIVLVKG 461


>gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
 gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
          Length = 487

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 161/476 (33%), Gaps = 50/476 (10%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P  +   +   +    R +   S D+R ++ G +F AI G   DGH F+  A+ +     
Sbjct: 9   PAALEAATGGRLIGTPRAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALEK----- 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVV-----DNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
              +A   +  +       P+L V     D     +         +    I+AVTG+ GK
Sbjct: 64  GAGAAVVAEARAKEFEGAGPVLAVPGEGEDPVLDAMRRLGLAARARTGAAIIAVTGSVGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +     ++ +    G +   +               +  +   +   L+ +       V 
Sbjct: 124 TGTKEALRHVLSAQGATHASV--------------ASYNNHWGVPLTLTRMPEDTRFGVF 169

Query: 187 VEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +HG         ++      T +   HI++ ++  A  +AK  +F  L P    A+
Sbjct: 170 EIGMNHGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKP-GGVAV 228

Query: 246 IYADDAYSKEVMKRAHNAGC-RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I  D+   + ++  A  +   RV++ G ++   +   ++    +   V  +V G    + 
Sbjct: 229 INRDNPNYERLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGIPVTYQ 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD- 361
              PG     N+L       A+G D A     L  L    GR E        G    VD 
Sbjct: 289 LGTPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDE 348

Query: 362 -YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIA 413
            Y     S+   L  +  I     GR I V G   +     +   R +   +A +  D+ 
Sbjct: 349 SYNANPASIRAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAI-EMLNKQDVLVVAG 466
                         + A +   +P  +        E +  A+   L   D ++V G
Sbjct: 409 F---------AVGPLMAHLFEALPMPVRGTAAPTAEGVTDAVLATLRPGDAVMVKG 455


>gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
 gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
          Length = 458

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 141/385 (36%), Gaps = 22/385 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                V +DSR ++ G +FVA+ G + D H FI   +A+GA A++VS             
Sbjct: 19  VPFARVHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAAVLVSREVDAA------- 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P +V  +TR  L    +    +     +AVTG++GK++V   +  I   +     ++
Sbjct: 72  --VPAIVAPDTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRL 129

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +++                  L   ++  +  + +  +  G   +     +    
Sbjct: 130 ATGGNLNN----------DIGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--KRAHNAGC 265
             TN  R+H ++  + +A  +         LP +  A+   D           RA     
Sbjct: 180 VITNAQREHQEFMVSVEAVAHE-HAAAIAALPADGVAVFPLDAESGGAYAPVWRAAAGTR 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           RVLS G   +      V  +   Q + +   G  F+    L GE  V NAL A    +A 
Sbjct: 239 RVLSFGTTQQADVHATVELVDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACALAA 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    +   L +   V GR +   T +    I   Y    +S+   +  +    + R++
Sbjct: 299 GVHVPAIQAGLAEFKPVKGRLQVKYTPAGTVVIDDTYNANPDSMRAAIDVLAGFAAPRVL 358

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLA 410
           V+   G   DQG        A   A
Sbjct: 359 VLGDMGEVGDQGPAFHDEIGAYAQA 383


>gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
 gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
          Length = 478

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 150/403 (37%), Gaps = 26/403 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR    G +FVAI G++ D H F+ +  A+   A +V+      D SA   
Sbjct: 29  VAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVAARNVSAALVARVPDGWDVSA--- 85

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ V +TR  L   A     K    ++AVTG++GK++V   +  I   +       
Sbjct: 86  --VPLVRVADTRAGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAA---VGAN 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIA 206
              +T+ +F  D        I L   L  L++     V     +H  +   L  I     
Sbjct: 141 ERLATVGNFNND--------IGLPLTLFRLNAAHRLAVVELGMNHPGETSLLAKIAEPTV 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +   L P E  A+  A+DAY+      A      
Sbjct: 193 ALVNNAQREHQEFMATVEAVALEHASVIHALNP-EGVAVFPANDAYASIWRVAATGNRIV 251

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++    +      V    + ++++I      F+    + G+   +NAL A    +A G
Sbjct: 252 DFALN-TAERTTAAAVTGRFDGKRLSIETPEGAFEVTLQVLGDHNAHNALAATSAALASG 310

Query: 327 IDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           +    +   LE    V GR +          G  +  D Y    +S+   +  + +  S 
Sbjct: 311 VSLDAIRRGLESFGAVKGRLQVKQAALGALAGATVIDDTYNANPDSMRAAIDVLASHASP 370

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
           R++V+   G   D G    R I         D      D  R 
Sbjct: 371 RVLVMGDMGEVGDHGPEFHREIGAYAKERGIDALYAMGDASRD 413


>gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
 gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
          Length = 471

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 88/471 (18%), Positives = 151/471 (32%), Gaps = 39/471 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +        +   ++   V  DSR +  G +FVA  G + DGH F   
Sbjct: 1   MIALSLAEIADVVGGQTHDIPDPSAQVTGPVVRDSREVVPGSLFVAFAGERVDGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                                A+     P +VV + +  L   A  +  K    ++A+TG
Sbjct: 60  ----------AVVEAGAAAVLASRPVGVPAIVVPDVQAALGALARHVVRKLGTTLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V Q+ +R   + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLVAQVLRRKAPTVFTPGSLNNEIGLPLTALSATEETRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             + + A   G  ++         G   N+G  HI     ++    AK  L E L    +
Sbjct: 158 -VLEMGARGIGHIRYLTGLTPPKIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPSAEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ-QVTISVEGK 298
              AI+ ADD   + +  R      RV+  G  G   +  + V      Q    +     
Sbjct: 217 GGAAILNADDPLVRAMASRTK---ARVILFGESGEADVRAENVTLTDAGQPAFRLHTPSG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+  + +   L +   +      V     G  +
Sbjct: 274 ASDVTMRLYGEHHVSNALAAAAVAHELGMSVSEIATALSEAGSLSRWRMEVTERPDGVTV 333

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             D Y     S+   L+ +  +  GR    V G   +           +      + +  
Sbjct: 334 VNDAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGK 393

Query: 417 DDNPRSEDPEKI-RAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +   +       G      +   +   AI      L   DV++V
Sbjct: 394 LVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAIDLLRSQLRPGDVVLV 444


>gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
 gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
          Length = 462

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 148/390 (37%), Gaps = 28/390 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N +S D+R ++ G +FVA+  ++ DGH +I  A   GA A +VS           +  N 
Sbjct: 24  NGISIDTRTLKMGDLFVALK-DQRDGHEYIKIAFENGAAAALVSR------VPDGLDENL 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+    L   A     +    ++ +TG+ GK+S    ++ I   +G +       
Sbjct: 77  PLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKTSTKEMLKSILIANGKTHA----- 131

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ +  +     + +  ++    +      KL     
Sbjct: 132 ---------AERSYNNHWGVPLTLARMPKETDFAVIEIGMNNPDEIRPLAKLAKLDVAIV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+   H+   +  +    AK  +FE L      AI+ +D +    ++        ++++
Sbjct: 183 LNVAPVHLKAFKNIEGIAYAKAEIFENLSSSN-IAIVNSDLSTFDILLNTVQKVRSKLIT 241

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G+       L       NK  VT  +   DF+F F   G+    NA+       A+GI+
Sbjct: 242 FGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVFAAAEAVGIE 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVD--YAHTSNSLEMILKN-IRTITSGRI 384
              +           GR +        G+I  +D  Y     S+E  +    ++  SGR 
Sbjct: 302 RKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVLSQSEASGRK 361

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           + + G  G+  + +      +A   +  AI
Sbjct: 362 VAILGDMGELGENEMLFHSNLAKIQSIKAI 391


>gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 451

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 129/375 (34%), Gaps = 28/375 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             + EV  DSR +  G +FVA+ G + DGH FI  A  +GA A +V              
Sbjct: 22  VTVGEVGLDSRGLAPGGLFVAMAGERVDGHDFIADAARRGAAAALVERDGDWP------- 74

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ V +TR  L    +    +    ++ VTG++GK++V   +  I  R G +    
Sbjct: 75  --LPVVRVADTRAALQALGAAWRRRLAARVVGVTGSNGKTTVKEMIAAILARRGATLATR 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +                      L          + + A++ G              
Sbjct: 133 GNLNNELGVPLT-------------LLRLDREHRYAVIEMGANAPGEIARLTAIAAPEVA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN G  H++          AK  LF  L P    A++ ADD  +        +  C  
Sbjct: 180 VITNAGPAHLEGFGDLAGVARAKGELFLGL-PDAGVAVVNADDPQAPTWYALVGDRRCLR 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G         +  A        + + G       PLPG   V NAL AA + +A+ +
Sbjct: 239 FGRGADADV----RATAETAGGHFELQIPGGRHPVRLPLPGRHNVMNALAAAAVAVALEV 294

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               ++  LE    V GR ++         +   Y     SL+  L  +     G   +V
Sbjct: 295 PLGDIVAGLEACSGVAGRLQWRTGREDCRILDDTYNANPASLQAALDVLAA-EHGERWLV 353

Query: 388 FGCGGDRDQGKRPIM 402
            G  G+   G   + 
Sbjct: 354 LGDMGELGAGAEALH 368


>gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 427

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 192/490 (39%), Gaps = 76/490 (15%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L+ K FP L            + KI  V  DSR I  G +F AI     +G+ ++ 
Sbjct: 3   RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQ 47

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+ +GA  ++        +          ++ V+NT   +   A          ++A+T
Sbjct: 48  EALDKGASLVIADRYSGNHEK---------VIKVENTILVMQELAEEYRRCLKTKMIAIT 98

Query: 122 GTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           G++GK++    +  I        +  G  +  IG   TI                    L
Sbjct: 99  GSNGKTTTKDIIYAILSKTFQTKKTLGNYNNHIGLPFTI--------------------L 138

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +         + +  SS G         +   G  TN+G  H+++ +T++  F AK  L 
Sbjct: 139 NLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELL 198

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L   E   I   DD + K++           + VGY  +  +       + K+    S
Sbjct: 199 PYL--PEGCFITSGDDVFLKKI---------PAIHVGYDERNDY---RIFGYKKKDRRSS 244

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +  D  +  PL G+  V NA +   +   IG+DS  + ++L ++ + P RFE   +  +
Sbjct: 245 FQLNDKQYEIPLEGKHNVMNAAMGIAIAETIGMDSKTIQQNLLQIELSPMRFER--SEYQ 302

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
           G +   D Y  +  S+ + L ++   T+   I V G     G+++      + + A+  +
Sbjct: 303 GTKYINDAYNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCS 362

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             AI+    PR     K   +    IP  +    + E I+  ++   ++ VL+ A +G +
Sbjct: 363 LQAILL-YGPR----MKKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRGMK 417

Query: 471 TVHIVTNGEK 480
              I+   EK
Sbjct: 418 LEEIIEREEK 427


>gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
          Length = 509

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 148/453 (32%), Gaps = 42/453 (9%)

Query: 26  RERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            +  +   V+ DSR +  G +FVA+VG + DGH +   A +QGA  ++            
Sbjct: 63  SDVTVTGQVTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQGAVLVLSQKNI------- 115

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRS 140
                 P +VV +T++ L   A     +  E     ++ VTG++GK++    + Q+    
Sbjct: 116 ---KGVPCVVVADTQRALGDLARAHLARLREKGHIRVIGVTGSAGKTTTKDLMGQMLATY 172

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G      G  +              +  +L                + AS+ G   +   
Sbjct: 173 GNVVVPAGSLNNELGLPLTVLKADETTDFL-------------VTEMGASAVGDLHYLTS 219

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
              L       +G  H+    + +    AK  L   LLP+   A++ ADD     + + A
Sbjct: 220 IAPLDIAVVLIVGLAHLGGFGSAELVAQAKSELVTGLLPQ-GIAVLNADDHRVIAMKELA 278

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAA 319
           H    R            +        +    + +  G        L GE  V NAL A 
Sbjct: 279 HG-QVRTFGSVRGADMRAINARTDAAGRAHFDVETTAGDTASVTLTLVGEHHVTNALAAL 337

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
               A+G+        L            V     G  I  D Y    +S+   L+ + T
Sbjct: 338 TAVTALGMPLDQAAVALSAARATSPHRMDVVDRPDGVTIIDDSYNANPDSMRAALRALAT 397

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
           +   +   V   G  R+ G +        D     +V  +  R     +    I  G   
Sbjct: 398 VAGRQRRTVAVLGEMRELGPQSRTYH---DDIGRLVVRLNISRLIVVGQGAQGIADGALQ 454

Query: 437 -----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +E  +   A     + L   DV+++
Sbjct: 455 EGSWGDEVVEVADLNAAHAALNDYLQPNDVVLI 487


>gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
 gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
          Length = 453

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 166/468 (35%), Gaps = 39/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + LS   +   + +INEV++D+R I  G +FVA+ G +           A
Sbjct: 1   MISVSLQALADVLSA-ELIGADCQINEVTTDTRQITPGCLFVALKGERF---------DA 50

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
               A  +++       S  +    P LVV +TR  L   A+ +  + P  ++A+TG+SG
Sbjct: 51  HDFAADALAAGAGALLVSKRLPLGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G   +      T  +F  D  +           L          +
Sbjct: 111 KTSVKEMTAAILRQCGEVLY------TAGNFNNDIGVPL-------TLLRLQPQHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +       NL   H++   +      AK  +F  L P +  AI
Sbjct: 158 ELGANHIGEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGL-PADGVAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I AD+        +         S     G      ++       Q T+           
Sbjct: 217 INADNNDWPHWQTQLVGKTVWRFSPQATDGVDFFASEISVNGKGTQFTLHSPFGAVAIEL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   V NAL AA L  ++G     V   L +L  VPGR   +        +   Y  
Sbjct: 277 PLPGRHNVANALAAAALATSVGASLEAVRVGLGQLQAVPGRLFPIQLKPGQLLLDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              S+    + +  +   R++V       G + ++  R +     L   D  +       
Sbjct: 337 NVGSMTAAAQVLAEMPGYRVLVAGDMAELGDEAEECHRQVGEAARLAGIDKVLTVGS--- 393

Query: 422 SEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   ++++    G  E   ++   I    E+L +  V+ V  KG
Sbjct: 394 -------LSQLLSAASGQGEHFQDKAAVIARVAELLTEHTVITVLIKG 434


>gi|15675337|ref|NP_269511.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71903813|ref|YP_280616.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71910970|ref|YP_282520.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
 gi|13622518|gb|AAK34232.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71802908|gb|AAX72261.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71853752|gb|AAZ51775.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
          Length = 463

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 90/482 (18%), Positives = 175/482 (36%), Gaps = 59/482 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPDD 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D   L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MN 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +   I   D   D Y  E           V+  G Q +   +       +K  +T +  
Sbjct: 211 SDGILIAPGDPIIDPYLPE--------NQMVIRFGNQQE---IDVTGIQEDKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD---- 408
            I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++       
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSG 378

Query: 409 LADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
             D  +   D+         +   AE +H      E+ ++ EA+   ++ +LN  D +++
Sbjct: 379 NIDQLVFYGDHIKELARLASQVYPAEQVHYFLK-TEQEDQFEAMAQYVQNILNPFDQILL 437

Query: 465 AG 466
            G
Sbjct: 438 KG 439


>gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
          Length = 427

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 192/490 (39%), Gaps = 76/490 (15%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L+ K FP L            + KI  V  DSR I  G +F AI     +G+ ++ 
Sbjct: 3   RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQ 47

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+ +GA  ++        +          ++ V+NT   +   A          ++A+T
Sbjct: 48  EALDKGASLVIADRYSGNHEK---------VIKVENTILVMQELAEEYRRCLKTKMIAIT 98

Query: 122 GTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           G++GK++    +  I        +  G  +  IG   TI                    L
Sbjct: 99  GSNGKTTTKDIIYAILSKTFQTKKTLGNYNNHIGLPFTI--------------------L 138

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +         + +  SS G         +   G  TN+G  H+++ +T++  F AK  L 
Sbjct: 139 NLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELL 198

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L   E   I   DD + K++           + VGY  +  +       + K+    S
Sbjct: 199 PYL--PEGCFISSGDDVFLKKI---------PAIHVGYDERNDY---RIFGYQKKDRRSS 244

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +  D  +  PL G+  V NA +   +   IG+DS  + ++L ++ + P RFE   +  +
Sbjct: 245 FQLNDKQYEIPLEGKHNVMNAAMGIAIAEMIGMDSKTIQQNLLQIELSPMRFER--SEYQ 302

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
           G +   D Y  +  S+ + L ++   T+   I V G     G+++      + + A+  +
Sbjct: 303 GTKYINDAYNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCS 362

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             AI+    PR     K   +    IP  +    + E I+  ++   ++ VL+ A +G +
Sbjct: 363 LQAILL-YGPR----MKKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRGMK 417

Query: 471 TVHIVTNGEK 480
              I+   EK
Sbjct: 418 LEEIIEREEK 427


>gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, putative
           [Chlamydophila psittaci 6BC]
          Length = 436

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 160/448 (35%), Gaps = 45/448 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ V+ DSR ++ G +F A+ G   DGH F+ QA   GA A VVS  Y    F     
Sbjct: 12  KKISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGDSF----- 66

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               ++VV++T + L              I+ +TG+ GK++  +F +             
Sbjct: 67  -GLELIVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLS--------- 116

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    +A      +   + L+  ++    +    + +  S     Q  L  ++    
Sbjct: 117 ---SVYRVYASPKSYNSQLTVPLSLLMAD-GDEDFVILEMGVSEPKNMQDLLSIVEPEVA 172

Query: 208 SFTNLGRDHIDYHQTQ--QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             TN+   H+     Q  Q     K  +    L      ++  D  +    MK++ +A  
Sbjct: 173 VITNIADQHVMNFPDQGVQGIAEEKSHI----LRNSRVQLLPKDSPWYSYFMKQSVSAEK 228

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              +   +    + K +     K  V IS    D DF    P +    N L++  L   +
Sbjct: 229 FSFAFYDETADFYYKAIR----KDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLL 284

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            +    ++     L + P RFE   +   G +I  D Y     ++   L  I   + G  
Sbjct: 285 DVPVDRIIHSCCDLQLPPMRFE--QSVRNGIQIINDAYNACPEAMIAALDAIPNPSEGGK 342

Query: 385 IVVFGCGGDRDQGKRPIMGKI-----ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            V+   G   + G     G       AL  A I          E    IR  + H     
Sbjct: 343 -VILILGHMAELGNHSEEGHTVVANKALSKASIIFFI-----GEKWLPIRHLLKHDTCEV 396

Query: 440 IEKGNRIEAIRTAIEM-LNKQDVLVVAG 466
               +  + I   ++  + + D++++ G
Sbjct: 397 SFYPS-AQGIEEILKKVVQQGDIVLLKG 423


>gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis
           glossinidius str. 'morsitans']
 gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 455

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 98/456 (21%), Positives = 170/456 (37%), Gaps = 45/456 (9%)

Query: 25  WRERKINEVSSDSR--HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
             +  I  V +DSR        +FVA+ G + D H F  QA+A GA A++V+    L   
Sbjct: 19  GDDCTILSVVTDSRAPSAAESSVFVALKGEQFDAHDFAEQAVAAGAAALLVNRRLPL--- 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P LVV +TR+ L    + +  + P  ++A+TG+SGK+SV      I ++ G 
Sbjct: 76  ------DVPQLVVADTRRALGQLGAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGR 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                   +T  +F  D  +           L    +     + + A+  G      D +
Sbjct: 130 ------VLATEGNFNNDIGVPL-------TLLRLTPAHDFAVIELGANHLGEIAWTTDLV 176

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-H 261
           +       NL   H+    +      AK  +F  L P     I+ AD        +   H
Sbjct: 177 RPETALVNNLSAAHLAGFGSLSGVAQAKGEIFAGL-PANGCGILNADSHDWPHWQQVLGH 235

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A  R       G       + +     + T+     +     PLPG+  V NAL A  L
Sbjct: 236 KAVWRFAVQAAGGVDFFASDIESDQQGVRFTLHSPLDECPVRLPLPGKHNVANALAACAL 295

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G +   V   L +L  VPGR   +   +    +   Y     S+    + +  +  
Sbjct: 296 ALSVGAELPAVAAGLAQLQAVPGRLFPIALGAGRLMLDDSYNANVGSMTAAAQVLAEMPG 355

Query: 382 GRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA--------IVTDDNPRSE---DPEK 427
            R++VV      G +  +  R +   +AL   D          ++ + + R E   D   
Sbjct: 356 YRVMVVGDMAELGEEAAECHRQVGEAVALAGIDKVLSVGSLSHLIGEASGRGEHFQDKTA 415

Query: 428 IRAEII-----HGIPGFIEKGNRIEAIRTAIEMLNK 458
           + A +        +   + KG+R  A+   +  L +
Sbjct: 416 LTARLAQLLSEQAVMTVLVKGSRSAAMEQVVRALQE 451


>gi|300741261|ref|ZP_07071282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|311113336|ref|YP_003984558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380446|gb|EFJ77008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|310944830|gb|ADP41124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 535

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 83/481 (17%), Positives = 156/481 (32%), Gaps = 46/481 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEV-----SSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +I     E+I      P+    R+ +E+     ++DSR +  G +FVA  G   DGH F+
Sbjct: 1   MIKLSAAEIITATGGSPLGLAGRE-SELGATFATTDSREVIPGTLFVAKPGEVTDGHNFV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----N 116
             A  +GA   +V      +          P + VD+    +   A     K        
Sbjct: 60  SGAFDKGAVLALVERPVKDERGILY-----PSIQVDDVVLAMGKIAQYAVEKMRSLGDLT 114

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++    +  I    G +   +G  +              S  YL      
Sbjct: 115 VIGITGSAGKTTTKDLLAAILSSQGETIAPVGSYNGEVGVPLTVFRADESTRYL------ 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + + A   G  ++  + +    G    +G  H             K  L E 
Sbjct: 169 -------VIEMGADHVGNIEYLANIVHPDHGVILKVGTAHAGEFGGVDNIERTKGELAEG 221

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVT 292
            +      I+ ADD     +  RA +A      VG + ++        +H       + T
Sbjct: 222 -IRTGGTLILNADDERVARMSARA-SAPVTYFGVGEKPQYERYTAALGLHTNDAGCPEFT 279

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + +    +++    L GE  V N L AA +    G+    +   L     +         
Sbjct: 280 LRLPDASEYEISSKLIGEHHVCNILAAATVAYNAGVPGDAIAHALNNTGALSKWRMARTD 339

Query: 352 NSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGCGGDRDQGKRPIMGKIA 406
            + G  +  D Y     S+   L+ +  +  G        V G   +  +       ++ 
Sbjct: 340 RADGVTVINDAYNANPESMTAALRTLAQLGRGAKPRRTWAVLGAMLELGEASLEEHDRLG 399

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +  + I       +E      A  + G       ++E     EA+      L   D++
Sbjct: 400 RLVVRMNISKLIAVGNEAKPAYNAAHLEGSWGNEATWVETPQ--EALNILRAELRSGDIV 457

Query: 463 V 463
           +
Sbjct: 458 L 458


>gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Sinorhizobium meliloti 1021]
 gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
 gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti 1021]
 gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
          Length = 477

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 92/470 (19%), Positives = 163/470 (34%), Gaps = 37/470 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA  +
Sbjct: 8   SDLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAALL 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS A       A  R   P++VVD+  + +         +    I+AVTG+ GK++   
Sbjct: 68  VVSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKTTTKE 123

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++ +    G     +               +  +   +   L+ +       V     +
Sbjct: 124 MLRHVLSPLGRVHASV--------------ASFNNHWGVPLTLARMPETTDFGVFEIGMN 169

Query: 192 H-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           H G        ++      T++   H+    +      AK  +FE ++     A+I  D 
Sbjct: 170 HAGEILPLTRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVV-NGGHAVINRDS 228

Query: 251 AYSKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A    + + A  AG   V S G   +    L +         +   + G+  +     PG
Sbjct: 229 AQYDLLERAAAAAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYVDYAHT 365
                NAL A       G D+  V      +    G   R            I   Y   
Sbjct: 289 RHIAENALAAIAAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNAN 348

Query: 366 SNSLEMI---LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+      L++      GR I V G   +  +    +   +A  + +  I        
Sbjct: 349 PASMRAAISLLRDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGP 408

Query: 423 EDPEKIRAEIIHGIPGFIEKGNR---IEAIRTAIEMLNKQDVLVV-AGKG 468
           E      A +   +P  +   +R    +    A+  ++  DV++V + KG
Sbjct: 409 E-----MAHLRDALPPEVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKG 453


>gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
 gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
          Length = 451

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 96/457 (21%), Positives = 166/457 (36%), Gaps = 58/457 (12%)

Query: 11  FPELINQLSIFPMQWRERKINEVS----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +LI  L   P+   E  + +VS    +D+R I+ G +F+A  G K DGH FI  AIA+
Sbjct: 7   LNQLIEVLLARPVNISEAALTQVSSGIQTDTRMIKPGEVFLAFRGEKFDGHEFISSAIAR 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +V   Y             P+L V NT +           +    ++ VTG+ GK
Sbjct: 67  GAIAAIVDDDYE--------NPGLPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +           G    +     +       P  L   L   +      + 
Sbjct: 119 TTTKELIAAVL----------GTKGNVLKTYGNYNNEIGVPKTL---LELNAEHDYAVIE 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G         +   G  TN+G  HI+   +++A   AK  L  E +PK+S AI+
Sbjct: 166 MAMRGRGQIAELAQIARPTIGVITNVGTAHIELLGSEEAIAEAKCELLAE-MPKDSVAIL 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+     +   A      VL+ G  G  +    V          + V G       PL
Sbjct: 225 NHDNPLL--MATAAKFWSGEVLTYGLSGGDVQGSLV------DNAIVEVAG--LRLPLPL 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     N L A  +   +GI+ + +   +  +++  GR +     +    +   Y    
Sbjct: 275 PGRHNATNYLAALAVAKVLGIEWSSLQAGVS-VNMPTGRSQRFSLPNDVLILDETYNAAP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRS 422
            ++   L+ +      R I V G   +  +    +  ++   +     D  +V  D    
Sbjct: 334 EAMLAALQLLADTPGKRKIAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVD---G 390

Query: 423 EDPEKIR--------------AEIIHGIPGFIEKGNR 445
           ED E I               A+++  +  F++ G+R
Sbjct: 391 EDAEAIARSAEGIPSECFATHADLVARLTTFVQGGDR 427


>gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
          Length = 471

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 90/475 (18%), Positives = 153/475 (32%), Gaps = 47/475 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR    G +FVA  G + DGH F   
Sbjct: 1   MIALSLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFAGERVDGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                                 T     P +VVD+ +  L   A  +  +    ++A+TG
Sbjct: 60  ----------AVVGAGAVAVLGTRPVGVPAIVVDDVQTALGALARHVVRRLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR   + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLQRKAPTVFTPGSLNNEIGLPLTALSATEETRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             + + A   G  ++         G   N+G  HI     ++    AK  L E L    +
Sbjct: 158 -VLEMGARGIGHIRYLAGLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEALPSEAE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ-QVTISVEGK 298
              AI+ ADD Y + +  R      +V+  G  G   +  + V      Q    +     
Sbjct: 217 GGTAILNADDPYVRAMASRTK---AKVILFGESGEADVSAENVRLTDTGQPAFRLHTPSG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  +
Sbjct: 274 ASDVTMRLYGEHHVSNALAAAAVAHELGMSADEIAVALSEAGSLSRWRMEVTERPDGVTV 333

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIA-----LDLAD 411
             D Y     S+   L+ +  +  GR    V G   +           +      L+++ 
Sbjct: 334 VNDAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSK 393

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  V       E           G      +   +   A+      L   DV++V
Sbjct: 394 LVAVGG----REAAWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 444


>gi|323144062|ref|ZP_08078706.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
 gi|322416175|gb|EFY06865.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
          Length = 461

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 164/397 (41%), Gaps = 31/397 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            +   + ++  V++DSR+   G +F+A+ G K D H F+ +A+  GA A+ VS   +   
Sbjct: 16  TLSGEDIEVASVTTDSRNCPPGSLFIALKGEKFDAHDFLEKAVLSGAAALGVSLGGNF-- 73

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                  + P +   +T + L L    +  K P  I AVTG+ GK++V      I ++  
Sbjct: 74  -------SVPCVKCADTLRLLGLAGLLVREKCPAKIGAVTGSCGKTTVKEMAYSILKQ-- 124

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-D 200
                     T  +F  D          +   L  L  +    +  + +SH  D  R  +
Sbjct: 125 ----GFNAMCTNGNFNNDV--------GVPLTLLRLDEKLDYAIIEQGASHKEDIKRTSE 172

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++  A   TN+G+ HI+   +    +  K  + + +L +    I+ +   +  E  K  
Sbjct: 173 FVQADAAVITNVGQAHIEGFGSAYGVYKGKSEILDSVLARGGIGIVPSCSQWIDEWKKDY 232

Query: 261 HNAGC--RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             A    ++L+ GY    F+ + +V +   +    ++ +G+       L G+    NA  
Sbjct: 233 KEAFLQGKMLTFGYNDDDFVKVSEVKSSSQEVSFILTAKGQSEQIKLNLLGKHNAQNAAA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           AA LC+A+G D   +   LE    V GR +    N  G  +  D Y  + N++   +  +
Sbjct: 293 AAALCLALGCDFKYIKPGLENTSSVKGRLQ--VKNFAGFTLIDDAYNASFNAVLSGIDTL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            +   G  ++VFG  G+       +  K+ L   +  
Sbjct: 351 SSFA-GFKVMVFGDMGELGDEAVSLHEKVGLYAKNKI 386


>gi|317478547|ref|ZP_07937705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
 gi|316905300|gb|EFV27096.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
          Length = 432

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 153/423 (36%), Gaps = 47/423 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F  +A+  G+   +V         +     +T
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEE------AYAPAGDT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK-------SSVASFVQQICQRSGLS 143
             +VV+N+ K L   A+    +    I+ +TGT+GK       S+V S    +    G  
Sbjct: 68  RYIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  IG   T+                    L       +  V + AS  G  +  ++  +
Sbjct: 128 NNHIGVPLTL--------------------LRLRPEHDLAVVEMGASHPGDIKELVEIAE 167

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHN 262
              G  TN+G+ H++   + +     K  +++ L   KE+   I+ D+ Y K++    H 
Sbjct: 168 PDYGIITNVGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQ 227

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAG 320
                ++ G +        V             + +    +    L GE+   NAL A  
Sbjct: 228 -----IAYGSEDGLYINGHVTGNSPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVT 282

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +    G++   + + L        R +   T      I   Y     S+   + N R + 
Sbjct: 283 IGHFFGVEPEKIDKALAGYTPQNNRSQLKKTADN-TLIIDAYNANPTSMMASISNFRNMQ 341

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +   +++ G   +  +       KIA         D+ +V +    +  P +   ++   
Sbjct: 342 AENKMLILGDMRELGKDSADEHQKIADYLEECGFKDVVLVGELFAATRHPYQSYPDVTAL 401

Query: 436 IPG 438
           I  
Sbjct: 402 IAE 404


>gi|149001954|ref|ZP_01826908.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
 gi|147759763|gb|EDK66753.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
          Length = 457

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 83/479 (17%), Positives = 177/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++   +    P          E  ++ E  ++   E L+  D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLVSQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKG 439


>gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232]
 gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes
           MGAS8232]
 gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 463

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 176/482 (36%), Gaps = 59/482 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A       S            P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKELS----------GKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPDD 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D   L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MN 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +   I   D   D Y  E           V+  G Q +   +       +K  +T +  
Sbjct: 211 SDGILIAPGDPIIDPYLPE--------NQMVIRFGNQQE---IDVTGIQEDKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD---- 408
            I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++       
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSG 378

Query: 409 LADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
             D  +   D+         +   AE +H      E+ ++ EA+   ++ +LN  D +++
Sbjct: 379 NIDQLVFYGDHIKELARLASQVYPAEQVHYFLK-TEQEDQFEAMAQYVQNILNPFDQILL 437

Query: 465 AG 466
            G
Sbjct: 438 KG 439


>gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 456

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 96/466 (20%), Positives = 158/466 (33%), Gaps = 47/466 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL   L    +   +   + VS+DSR I  G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 7   FSELTVPLDARLVGG-DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKGAVG 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSV 129
            +V              +  P LVV +TRK L+   A    G     + AVTG+SGK++V
Sbjct: 66  ALVEHEVEG--------AALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G      G  +                      L          + + A
Sbjct: 118 KEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTAAVIELGA 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G   + +   K      TN G  H+           AK  + E  +     A++  +
Sbjct: 165 SRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPDRIVEAKGEILEG-VEASGTAVLNLE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D       KRA +      ++       +  ++          T+            L G
Sbjct: 224 DKAFPIWRKRAGHRNILTFALADAAADFYASELSRDARGCPSFTMDSPLGSAQVQLNLLG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
              V NAL AA    A+G+    ++  L  +  V GR       S G R+  D Y     
Sbjct: 284 THNVTNALAAAAAAGALGVSLEGIVAGLNNVQPVKGRA-VAQIASNGVRVIDDTYNANPG 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +  +   T   ++V+   G      +QG   +    A  ++ +  V         
Sbjct: 343 SINAAVDILTGFTGRTVLVLGDIGELGEWAEQGHHDVGAYAAGKVSALYAVGP------- 395

Query: 425 PEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                  + H +  F E      ++ E I       +    L++ G
Sbjct: 396 ------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 435


>gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
 gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
          Length = 476

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 97/460 (21%), Positives = 164/460 (35%), Gaps = 51/460 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS D+R ++AG +FVA+   + DGH F+ QA+ +GA A +VS           + ++ P
Sbjct: 25  GVSIDTRTLRAGDLFVALSAAR-DGHEFVAQALEKGAAAALVSR------VPENVPADAP 77

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +LVV +  + L         +    I+AVTG+ GK+S    ++ +          IG   
Sbjct: 78  LLVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKTSTKEMLRTV----------IGGQR 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            + +           P+ LA+         V  + +  +  G         +      T 
Sbjct: 128 RVHAAEASYNNHWGVPLTLARMPR---DTEVGIIEIGMNHPGEIAPLARLARPHVAMITT 184

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++           K  +F  L+P    A+I  D   +  +   A   G  +L+ G
Sbjct: 185 VGTAHLEAFDNIDGIAREKASIFNGLMP-GGWAVINGDLDTTPILRAAAEATGAHILTFG 243

Query: 272 YQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 H L KV  I         +      F     G     NAL    +  A+G+D A
Sbjct: 244 EAPANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVLAVVRALGLDRA 303

Query: 331 LVLEHLEKLHVVPGRFEFV-----GTNSRGGRIYVDYAHTSNSLEMIL-----------K 374
           L    L +     GR           + +     +D A  +N + M              
Sbjct: 304 LACSDLSQWTPPAGRGMRERLLLDPVDEKMAFELIDDAFNANPVSMAAALEVIAAARPKD 363

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRA 430
           N+     GR I + G   +    +  +   +A   A    D+        R      +  
Sbjct: 364 NVGRHARGRRIAILGEMLELGPDELALHAGLADLPATAELDVVHCVGKRMR-----ALYE 418

Query: 431 EIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
            +  G  G   EK + + A   A  +++  DV++V G KG
Sbjct: 419 ALPPGNRGRHTEKASDLAA--KAARLVDAGDVVLVKGSKG 456


>gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 452

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 151/417 (36%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              ++ GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 55  GGVLSAGAAAVVVSREDCAALGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  + +R          ++T  +F           I L   L  L+ +
Sbjct: 107 TGSGGKTTVKEMLAAVLRR---RFGDDAVSATAGNFNNH--------IGLPLTLLKLNEK 155

Query: 181 G-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
                + +  +  G         K  A    N  R H+            AK  ++  L 
Sbjct: 156 HRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGL- 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA     + +         + G     +  + +       +  +    +
Sbjct: 215 CSDGMALIPQEDANMA--VFKTATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDE 272

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +G  +
Sbjct: 273 RTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIKGATL 331

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 332 IDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 388


>gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 458

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 150/413 (36%), Gaps = 28/413 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +   +  INE+  D++ I  G +F+A++G K D H+FI  A+ +   A V  
Sbjct: 9   IALITNGTLYGADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      I+ + P ++V+NT   L   A  +  K    ILA+TG+ GK+SV     
Sbjct: 69  K---------NIKPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +++G         STI +   +  +           L          + + AS  G 
Sbjct: 120 SILRKNGN------TISTIDNLNNNIGVP-------MTLLQLKQEHKYGVIELGASKPGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  +  +       N+   H+   ++      AK  +F  L P  S  II  D  +  
Sbjct: 167 IAYTSNISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKP-NSTVIINLDSHHFS 225

Query: 255 EVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  K   N+     S+  +         +    +    T+       +   P  G   + 
Sbjct: 226 QWKKDIKNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNIS 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A+    A+ I    +   L    +V  R E +        I   Y    +S+   +
Sbjct: 286 NALAASAFSFALKIPLKKIKIGLLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAI 345

Query: 374 KNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           K +  +  G  I+V G      +       ++G  A   A   I +  +  SE
Sbjct: 346 KVLERM-PGYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSE 397


>gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC7]
          Length = 494

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 164/477 (34%), Gaps = 66/477 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V            +
Sbjct: 29  EIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VV 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +   +  
Sbjct: 80  KCDIPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLI 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +            T    +L   L              A+  G   +    ++  
Sbjct: 140 TRGNLNNDLGVPMMLLELTDEHRFLVIEL-------------GANHLGEIAYTASMVRPD 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     +     AK  ++  L  +   AI+   D +  E++K+A     
Sbjct: 187 VALILNIGTAHLGEFGGRANIACAKSEIYSALTSQ-GVAILPFSDDFYPELLKQASQFTK 245

Query: 266 RVLSVGYQG---------------------------KFIHLKKVCAIHNKQQVTISV--- 295
             LS G +                              +    +         T++    
Sbjct: 246 LHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNID 305

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +        P  GE  V NAL AA    A+G+    + + L +     GR   +    
Sbjct: 306 IDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM-- 363

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDL 409
            G  I  D Y     S+    K +      +I+V   +F  G   D     +  ++AL  
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLE 423

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D   +T  N  +     I  E       + +K + ++ +R  +   +    ++  G
Sbjct: 424 IDHV-LTLGNHMAHTAAAI-NEQKSIARHYTDKPSLLKDLRQLLSHGSA--TVLFKG 476


>gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 461

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 173/480 (36%), Gaps = 34/480 (7%)

Query: 1   MKLQDLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M   DL   +  E++   ++  P +  +RK+N +  DSR    G +F  I G + D H F
Sbjct: 1   MLKLDLTIGEMLEILETEAVGVPARTLKRKVN-LCMDSRESAKGVVFWPIKGARFDAHQF 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + Q    GA   VV+      +F            V++T K L   A           +A
Sbjct: 60  VSQMEKDGALMSVVNQTAIDPNFKMYAP-------VEDTTKALLKLAKGYQRLFKLKKVA 112

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++     + +      +    G          +       P+ L +      S
Sbjct: 113 ITGSNGKTTTKEMTKAVLSMKYNTHATKG----------NFNNHIGVPMTLFQLKH---S 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V +  S     +      +      TN+G  H++        FN K+ +   L  
Sbjct: 160 HEAAVVEMGTSGPDEIRPLSLATEPDIAVITNIGASHLERLGDLDGVFNEKINITAGL-K 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    I+ ADD     + K       +V++ G +     + K   +   + +        
Sbjct: 219 ENGTLIVNADDE---RLCKVKATKHYKVVTFGVR---RGVVKPEKLKWTENLCADFYVGR 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F+  +PG+  +Y+AL A  +  A+ I    + + L        R E    N+ G ++ 
Sbjct: 273 THFVLNVPGDHNLYDALAAIAVGQALRIPKGDIAKALAGFTSTSMRMEI--KNANGFKVI 330

Query: 360 VD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            D Y    +S +M L+ +  +   G+ I V G   +  +    +  +I   + ++     
Sbjct: 331 SDCYNANPSSTKMALQTLGNMRVEGKRIAVLGDMLELGKESGNLHKQIGALVPEMNFDML 390

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                +  + +      G+          E I    E++ + D+L+V G +G     +V 
Sbjct: 391 LAVGKDAKKYVEGAKSRGMKNVQYFETVPEVISMLGEVVAEGDILLVKGSRGMHMEQVVE 450


>gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) [imported] - Buchnera sp. (strain APS)
 gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 455

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 150/413 (36%), Gaps = 28/413 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +   +  INE+  D++ I  G +F+A++G K D H+FI  A+ +   A V  
Sbjct: 9   IALITNGTLYGADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      I+ + P ++V+NT   L   A  +  K    ILA+TG+ GK+SV     
Sbjct: 69  K---------NIKPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +++G         STI +   +  +           L          + + AS  G 
Sbjct: 120 SILRKNGN------TISTIDNLNNNIGVP-------MTLLQLKQEHKYGVIELGASKPGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  +  +       N+   H+   ++      AK  +F  L P  S  II  D  +  
Sbjct: 167 IAYTSNISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKP-NSTVIINLDSHHFS 225

Query: 255 EVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  K   N+     S+  +         +    +    T+       +   P  G   + 
Sbjct: 226 QWKKDIKNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNIS 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A+    A+ I    +   L    +V  R E +        I   Y    +S+   +
Sbjct: 286 NALAASAFSFALKIPLKKIKIGLLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAI 345

Query: 374 KNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           K +  +  G  I+V G      +       ++G  A   A   I +  +  SE
Sbjct: 346 KVLERM-PGYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSE 397


>gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 328

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 126/350 (36%), Gaps = 26/350 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL+  L    +   +   + VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 3   FSELVVPLDALLVGG-DCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVG 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSV 129
            +V              +  P LVV +TRK L+   +          + AVTG+SGK++V
Sbjct: 62  ALVEREVQG--------AALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTV 113

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G      G  +                      L          + + A
Sbjct: 114 KEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAVIELGA 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G   + +   K      TN G  H+           AK  + E L      A++  +
Sbjct: 161 SRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGL-GAGGTAVLNLE 219

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D       KRA +      ++      ++  ++          T++           L G
Sbjct: 220 DKAFPIWRKRAGDRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQLNLLG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              V NAL AA    A+G+    ++  L  +  V GR       S G R+
Sbjct: 280 THNVSNALAAAAAGCAMGVPLEGIVTGLNNVQPVKGR-AVAQIASNGTRV 328


>gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 463

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 151/417 (36%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 12  MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFV 65

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              ++ GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 66  GGVLSAGAAAVVVSREDCAALGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  + +R          ++T  +F           I L   L  L+ +
Sbjct: 118 TGSGGKTTVKEMLAAVLRR---RFGDDAVSATAGNFNNH--------IGLPLTLLKLNEK 166

Query: 181 G-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
                + +  +  G         K  A    N  R H+            AK  ++  L 
Sbjct: 167 HRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGL- 225

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA     + +         + G     +  + +       +  +    +
Sbjct: 226 CSDGMALIPQEDANMA--VFKTATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDE 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +G  +
Sbjct: 284 RTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIKGATL 342

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 343 IDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 399


>gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 463

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 133/381 (34%), Gaps = 18/381 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            ++ +S+D+R ++    F+A+ G + DGH FI  A+ +GA  +VV+S        A    
Sbjct: 24  PVDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKGAAVVVVASGRGE---GAVRAG 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  ++ VD+T   L   A     ++   +  +TG++GK+S    +  I +       + G
Sbjct: 81  SVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTKELLAAILEH------RHG 134

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 +      +           L+   +     + +  +  G     ++      G 
Sbjct: 135 ILKNRGNLNNQIGVPL-------TLLTMDPTHEAAVIEMGINVPGEMARLVEIAGPTLGL 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   H++   +       K RL++ L   E  A++  DD   +   KR         
Sbjct: 188 ITNIQPAHLEGLGSLDGILKEKGRLWDAL-DAEGIAVVNLDDQRLRAYSKRLAARTVTCS 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +     + ++ +  +  +  + +  +    +    G   V NAL AA    A+G  
Sbjct: 247 VRDPEAGVRVVGEIESDEHSTRFRMVLGTETVPVVLSAVGIHYVRNALAAAAAAWAMGEP 306

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVV 387
              +   L     V  R +          I   Y     S+   ++    +  G   I V
Sbjct: 307 GEAISAGLAAYRPVGQRMQIRHMEDGRVLIDDTYNANPESMLAAVRAALAVCRGKPCIAV 366

Query: 388 FGCGGDRDQGKRPIMGKIALD 408
            G   +       +  ++   
Sbjct: 367 LGEMRELGADSAALHRELGRR 387


>gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC8]
          Length = 496

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 162/479 (33%), Gaps = 68/479 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V            +
Sbjct: 29  EIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VV 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +   +  
Sbjct: 80  DCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLI 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +            T    +L   L              A+  G   +    ++  
Sbjct: 140 TRGNLNNDLGVPMMLLELTDEHRFLVIEL-------------GANHLGEIAYTASMVRPD 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     +     AK  ++  L  +   AI+   D +  E++K+A     
Sbjct: 187 VALILNIGTAHLGEFGGRANIACAKSEIYSALTSQ-GVAILPFSDDFYPELLKQASQFTK 245

Query: 266 RVLSVGYQG---------------------------KFIHLKKVCAIHNKQQVTISVEGK 298
             LS G +                              +    +         T++    
Sbjct: 246 LHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNID 305

Query: 299 -------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                        P  GE  V NAL AA    A+G+    + + L +     GR   +  
Sbjct: 306 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 365

Query: 352 NSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIAL 407
              G  I  D Y     S+    K +      +I+V   +F  G   D     +  ++AL
Sbjct: 366 --DGYHIIDDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLAL 423

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              D   +T  N  +     I  E       + +K + ++ +R  +   +    ++  G
Sbjct: 424 LEIDHV-LTLGNHMAHTAAAI-NEQKSIARHYTDKPSLLKDLRQLLSHGSA--TVLFKG 478


>gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 452

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 150/417 (35%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              ++ GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 55  GGVLSAGAAAVVVSREDCAALGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  + +R          ++T  +F           I L   L  L+ +
Sbjct: 107 TGSGGKTTVKEMLAAVLRR---RFGDDAVSATAGNFNNH--------IGLPLTLLKLNEK 155

Query: 181 G-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
                + +  +  G         K  A    N  R H+            AK  ++  L 
Sbjct: 156 HRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGL- 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA     + +         + G     +  + +       +  +    +
Sbjct: 215 CSDGMALIPQEDANMA--VFKTATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDE 272

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +G  +
Sbjct: 273 RTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIKGATL 331

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S+   +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 332 IDDTYNANPDSMRAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 388


>gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
 gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
          Length = 475

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 161/479 (33%), Gaps = 46/479 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     +L   +        E  +   V +DSR  +AG ++VA  G   DGH F+  A+
Sbjct: 1   MIQLTTRQLAQVVGGTLAGDGELVLTGPVVTDSRLAEAGSLYVARRGESADGHDFVEAAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGT 123
             GA A +                    ++V + ++  +  A  +  + P+  ++AVTG+
Sbjct: 61  GNGAVASLAEREVPG-----------TYVLVPDVQEAFARLARWMVDELPDLQVVAVTGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK+S    + Q+   +G +   I   ++            P+  YL             
Sbjct: 110 SGKTSTKDLLGQVLAEAGPTIAPIESYNSEVGVPLTVCRIEPTTEYLVAE---------- 159

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              + AS  G   +         G   N+G  H+    +QQ   + K  + E L P +  
Sbjct: 160 ---MGASGPGHIAYLTAIAPPRVGIVLNVGSAHLGGFGSQQGIADTKAAIVEGL-PADGL 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVE 296
           A++ ADD     + +R  +   +  S+                        + + T++V 
Sbjct: 216 AVLNADDPLVAAMSERVTSGEVQYFSLDADRAVRDESVTAWAEDLALDEAGRARFTVAVR 275

Query: 297 G----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           G    +       + G     NAL        +G+D+A  +  L +   +      V   
Sbjct: 276 GQGGTERHPVHLRVRGAHMAANALAVLLAVRHVGVDTADAVAALSRAEAISRWRMEVTER 335

Query: 353 SRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLA 410
             G  +  D Y     S+   L  +R +  GR    V     +          ++    A
Sbjct: 336 PDGVMVINDGYNANPESMRAALTALRDMAHGRRTWAVLAGMLELGPDSAARHREVGRHAA 395

Query: 411 DIAIVTDD------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++ +           P  E    +        P  I   +  EA     + L  QDV++
Sbjct: 396 EVGVDVVLVVGDTAAPIGEGVHDVSTAAGQDGPVVISVHDSEEARSVLEDQLVDQDVVL 454


>gi|298386757|ref|ZP_06996312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
 gi|298260431|gb|EFI03300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
          Length = 432

 Score =  189 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 160/437 (36%), Gaps = 36/437 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  +A+  G    V+  +         I  +   
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDES------EYAIEGDQRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  + L   A+    +    ++ +TGT+GK++    +  +  +S    + +G    
Sbjct: 70  ILVDDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P  L   L   +   +  + + A+  G  +   + ++   G  TN+
Sbjct: 126 ------NLNNHIGVPSTL---LRLKAEHDLAVIEMGANHPGEIKFLSEIVEPDCGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++ L  KE     I+ D+AY   + +     G  ++  G
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDFLRKKEGSTVFIHHDNAYLMNIAE-----GLNLIPYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +       ++               +GK +     L GE+   NAL A  +    G++ 
Sbjct: 232 TEDDLYVNGRITGNSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVED 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A + E L        R +   T+     I   Y     S+   L+N R +     +++ G
Sbjct: 292 AKINEALAGYTPQNNRSQLKKTDDN-TLIIDAYNANPTSMMAALQNFRNMEVPHKMLILG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
              +          KIA  L + A         E    +  +       F    N  E I
Sbjct: 351 DMRELGAESAAEHQKIADYLKECA--------FEKVWLVGDQFAAAEHSFQTYPNVQEVI 402

Query: 450 RTAIEMLNKQDVLVVAG 466
           +       K   +++ G
Sbjct: 403 KELEADKPKGYTILIKG 419


>gi|227833495|ref|YP_002835202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262184483|ref|ZP_06043904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227454511|gb|ACP33264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 511

 Score =  189 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 146/434 (33%), Gaps = 56/434 (12%)

Query: 26  RERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            + ++   V  DSR + +G +FVA+ G + DGH +   AI +GA A++ +    +     
Sbjct: 23  PDTQVTGFVEFDSRKVTSGSLFVALPGARVDGHDYATTAIDKGAVAVLAARPVGVPAIVV 82

Query: 85  TIRSNT------PILVVDN---------------TRKFLSLFASRLYGKHPENILAVTGT 123
                         +  ++                R      A+    +    I+ VTG+
Sbjct: 83  EPHGRVEGDGANADIYANDEDGSAAAVVAALSAIARAVTQRLAA----EQNLTIVGVTGS 138

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    +  I +  G +    G  +                 YL    + +S++G+ 
Sbjct: 139 AGKTSTKDLIATIFREVGETVAPPGSFNNEIGLPYTALRCDEHTRYLV---AEMSARGIG 195

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKE 241
           H           +H  +      G   N+G  H+    +++    AK  L E L      
Sbjct: 196 H----------IRHLTEITAPRVGVVLNVGTAHLGEFGSRENIAQAKGELVEALPNAEAG 245

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVE 296
             A++ ADD +   +  R         +   +G     ++     V     +   T+   
Sbjct: 246 GVAVLNADDPFVAAMAPRTEAKVVYYSTENRRGGAPAAQYYATDIVLDDVARPSFTLHSP 305

Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +       + G  QV NAL AA   I +G+ +  V   L    +       V T   G
Sbjct: 306 DAEPVAVKLQVFGSHQVSNALAAAAAAIELGVSADTVAAALSGHRLASEHRMDVRTRRDG 365

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTI----TSGRIIVVF----GCGGDRDQGKRPIMGKIA 406
             I  D Y    +S+   +  +          R I V       G D +Q  R +   +A
Sbjct: 366 VTIIDDSYNANPDSMRAAIAALAYTAAARPDARSIAVLGEMGELGSDAEQSHRQLGEFLA 425

Query: 407 LDLADIAIVTDDNP 420
               +  I   +NP
Sbjct: 426 KYHVEHLIAVGENP 439


>gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA19]
 gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 452

 Score =  189 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 151/417 (36%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              ++ GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 55  GGVLSAGAAAVVVSREDCAALGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  + +R          ++T  +F           I L   L  L+ +
Sbjct: 107 TGSGGKTTVKEMLAAVLRR---RFGDDAVSATAGNFNNH--------IGLPLTLLKLNEK 155

Query: 181 G-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
                + +  +  G         K  A    N  R H+            AK  ++  L 
Sbjct: 156 HRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGL- 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA     + +         + G     +  + +       +  +    +
Sbjct: 215 CSDGMALIPQEDANIA--VFKTATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDE 272

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +G  +
Sbjct: 273 RTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIKGATL 331

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 332 IDDTYNANPDSMKAAVDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 388


>gi|307544547|ref|YP_003897026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
 gi|307216571|emb|CBV41841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
          Length = 455

 Score =  189 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 100/449 (22%), Positives = 164/449 (36%), Gaps = 34/449 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  +++D+R +  G +FVA+VG + D H FI QA   GA A +V             
Sbjct: 24  EVALTSITTDTRRLGPGALFVALVGERFDAHDFIAQAREAGAAAALVERRQDDP------ 77

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L V +TR  L L            ++AVTG SGK++V   +  I  RSG     
Sbjct: 78  ---LPQLEVADTRLALGLLGRARRLAWGGPLVAVTGNSGKTTVKQMLATILSRSGA---- 130

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +T  +   D            +    +   G  H+   A +  L            
Sbjct: 131 --TLATRGNLNNDFGAPMTLLELDGEHRRAVVELGANHLGEIAWTASLAM-------PDV 181

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+   H+           AK  +   L  ++  A++  DD Y +    +A +    
Sbjct: 182 AVITNVTGAHVGEFGGMGRIAQAKGEILGGL-SRDGVAVLNRDDRYFRFWASQAGSREVL 240

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAI 325
              +  +G+      VC    +   T+S +G++       L G   V NAL AA   +A+
Sbjct: 241 DFGLEDEGRLRAETLVCDEFGRYAFTLSFDGRELGRVQLALMGRHNVANALAAAAAALAL 300

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
             D A VL  LE++  V GR   V     G R+  D Y     +++  L+ + T+ +   
Sbjct: 301 RADPADVLAGLEEVEPVAGRLG-VFAGRNGARLLDDTYNANPGAVKAALETLATLPA-PR 358

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
             + G  G+  +       ++      + I   D   +       A    G  G+    +
Sbjct: 359 WCLLGAMGELGEASAHWHAEVGHHARTLGI---DFLGTLGEAARPASRAFGEGGY-HFDD 414

Query: 445 RIEAIRTAIEMLNKQDVLVVAG---KGHE 470
           R    R  +  L     ++V G    G E
Sbjct: 415 REALTRHVLHHLPPGASVLVKGSRSAGME 443


>gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
 gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
          Length = 444

 Score =  189 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 173/471 (36%), Gaps = 56/471 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+   ++         WR  +   VS+D+R + AG +F+A+ G    G  F+  A  +
Sbjct: 6   TAKEIATIVGGYLRGNDDWRALE---VSTDTRTLTAGQLFIALRGEHFCGEDFLQTAQER 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++V     +         + P +VV++T   L + A+    +    I+ +TGT+GK
Sbjct: 63  GAVAVIVQEYREI---------DIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + +I    G +   +G  +                I +   L  L ++    V 
Sbjct: 114 TSTKEMLYRILSAQGKTLATVGNLNN--------------DIGVPLTLLRLQNEHRFAVI 159

Query: 187 VEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              ++H  D  RL   +       TN+   H+    +      AK  ++          +
Sbjct: 160 EMGANHPRDIERLVKIVCPDVAVITNVSAAHLQGFGSLDGVAAAKSEIYR---FSSGALV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD   +   ++   +   +  ++    ++          N Q+ T+    +  +  + 
Sbjct: 217 VNADLPQAAAWLQEFGHRSIQTFALEQSAQWTAAD---ISDNGQRFTLMHLAQRAEIAWQ 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           L G   V NAL A       G+  A   + L+ L +   R   +        +Y D Y  
Sbjct: 274 LCGRHNVANALAATAAASFAGVSLAQSAQALQGLRLQQSRLVALHVRHH--TLYDDTYNA 331

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-------------ALDLAD 411
              S +  ++ I+  T+   +V+ G  G+       +  ++             AL + D
Sbjct: 332 NPASFKAAIEVIK--TAAHSLVIAGKMGELGAQSAALHAEVAAFAREKGIKHFWALSVPD 389

Query: 412 IAIVTDDNPRSEDPEKI---RAEIIHGIPGF--IEKGNRIEAIRTAIEMLN 457
            A    D    ED E +     +I+ G   +  + KG+R   +   I  L+
Sbjct: 390 YAAGFPDARLFEDVEAVNQALRDILAGEKPYTVLVKGSRSARMERVIAALD 440


>gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
          Length = 471

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 166/483 (34%), Gaps = 47/483 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         ++ + +          ++   S DSR + AG +F A++G + DGH F+
Sbjct: 1   MKLT------LGQVADWIHAEGEFVSTDEVVGYSIDSRTVGAGELFFAVMGERFDGHEFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPEN 116
             A+  GA A VVS  + +    +       +L V +        L   A  +       
Sbjct: 55  KTALEAGAVAAVVSMRWVV----SAEVDPCKLLRVPDGEDCVLSALQKLAREVRKSWGGR 110

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTG++GK++    V  +           G          +       P+ L   L  
Sbjct: 111 VIGVTGSAGKTTTKECVAAVLAAKFKVLKSAG----------NLNNHFGVPLQL---LRL 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFE 235
                V  + +  +  G         +      +N+   H+++     +    AK  L +
Sbjct: 158 EKEHQVAVIEMGMNHAGEIATLAKIAEPDWAVVSNVAAVHLEFFADGMEGIARAKKELVD 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L P    A + ADD +   V         R+  +        ++         Q  + V
Sbjct: 218 AL-PAAGVAFLNADDVF---VSTFGEGHEARMFGLSETADVRGVEVKNVGLEGMQFVVQV 273

Query: 296 EGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             ++            L GE  VYNAL A  + +  G+     +  L+ +     R E +
Sbjct: 274 TAREGRVADKMRARIALLGEHNVYNALAAIAVGLESGMTLGECVFALDSVVPSDKRGEMI 333

Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                G R+  D Y     +LE ++  +  I  GR IV+ G   +  Q    +       
Sbjct: 334 --EWHGARLINDSYNSNPRALEAMVDALMAIEGGRHIVIAGEMLELGQDAGKLHAASGRQ 391

Query: 409 LA--DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-A 465
           +A   + +V      +E    +    + G      K    EA       L + DV+++ A
Sbjct: 392 MAKRGVDVVVGVRGFAESLAGVAK--MSGAEALFVKTP-EEAGAWMKANLREGDVVLLKA 448

Query: 466 GKG 468
            +G
Sbjct: 449 SRG 451


>gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 440

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 149/408 (36%), Gaps = 42/408 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   + +  Q  +  +N++  DSR I+ G IF+ + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDW-SQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA                        L+VD+        A     K    ++AV
Sbjct: 56  EIAFDNGAIISFSEKEVEQAH-----------LLVDDNLLAFQKLAKYYLEKTKVPVIAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +   +    G  +                  L          
Sbjct: 105 TGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNNEIGLPYTILHMPDDTEKL---------- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G      +  K      T +G  H+++  +++     KM +   L   
Sbjct: 155 ---VLEMGMDHPGDIDFLSELAKPELAVITLIGEAHLEHMGSRENIAKGKMGITAGL--- 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I  AD      ++        +++  G  G+ + + K+  + +K+++T      D 
Sbjct: 209 HGELIAPADP-----IINAFIPDNQKIIRFGLPGEDLFITKL--VEHKEKLTFETNFLDE 261

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG++   NA++AA + +  G+  A + + L+++ +   R E+    +    +  
Sbjct: 262 SITIPVPGKYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLLSD 321

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKI 405
            Y     ++ +IL+  + I     GR I V     +       +  +I
Sbjct: 322 VYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPSAAQLHKEI 369


>gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
 gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
          Length = 463

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 151/417 (36%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 12  MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFV 65

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              ++ GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 66  GGVLSAGAAAVVVSREDCAALGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  + +R          ++T  +F           I L   L  L+ +
Sbjct: 118 TGSGGKTTVKEMLAAVLRR---RFGDDAVSATAGNFNNH--------IGLPLTLLKLNEK 166

Query: 181 G-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
                + +  +  G         K  A    N  R H+            AK  ++  L 
Sbjct: 167 HRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGL- 225

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA     + +         + G     +  + +       +  +    +
Sbjct: 226 CSDGMALIPQEDANIA--VFKTATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDE 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +G  +
Sbjct: 284 RTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIKGATL 342

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 343 IDDTYNANPDSMKAAVDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 399


>gi|237715366|ref|ZP_04545847.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405210|ref|ZP_06081760.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645647|ref|ZP_06723336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294806411|ref|ZP_06765254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444675|gb|EEO50466.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356085|gb|EEZ05175.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638992|gb|EFF57321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294446426|gb|EFG15050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 431

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 157/438 (35%), Gaps = 35/438 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    +  + 
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIID------EIQYAVEGDQ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYILVDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P  L   L       +  + + A+  G  +   +  +   G  T
Sbjct: 126 --------NLNNHIGVPTTL---LRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  K++   I+ D+ Y   +     + G  ++S 
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDFLRKKDATTFIHHDNPYLMNI-----SQGLNLISY 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G +       ++               +G+       L GE+   NAL A  +    G++
Sbjct: 230 GTEDDLYVNGRITGNSPYLAFEWKAGKDGEAHQVRTQLIGEYNFPNALAAITIGRFFGVE 289

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  + + L +      R +   T      I   Y     S+   L+N R +T    +++ 
Sbjct: 290 AKKIDKALAEYTPQNNRSQLKKTEDN-TLIIDAYNANPTSMMAALQNFRNMTVPHKMLIL 348

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           G   +          KI        I   D    E    +  +       F    N  E 
Sbjct: 349 GDMRELGADSPAEHQKIVDY-----IKESD---FEKVWLVGEQFAASEHSFKTYANVQEV 400

Query: 449 IRTAIEMLNKQDVLVVAG 466
           I+   E   K   +++ G
Sbjct: 401 IKDLQEDKPKGYTILIKG 418


>gi|262283025|ref|ZP_06060792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261277|gb|EEY79976.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 456

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 99/479 (20%), Positives = 180/479 (37%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +  +    S    +  P ++VD+  K     A     K   ++LAV
Sbjct: 56  AT----------AFAQGAAATLSERPVAEAPYILVDDVLKAFQCLAKYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   KL +   R E+    + G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVSETAIAQAFSKLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGRVHYFVKNDEKDQFEQLTKAVRESLTPADQILLKG 439


>gi|145356732|ref|XP_001422580.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582823|gb|ABP00897.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 680

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 108/560 (19%), Positives = 214/560 (38%), Gaps = 86/560 (15%)

Query: 6   LIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L+ + F +  ++   I      + +I+ +++D   + +G +FV               A 
Sbjct: 100 LLREIFEDAGVDARWIALEDDEDVEISGIANDVNALLSGDLFVC------------GSAR 147

Query: 65  AQGA------EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
             GA      EA+   +   + + +    ++ PI VV++  + L+  A   YG   + + 
Sbjct: 148 EGGAMEDAAREAVAAGAVAVVSERAIEGLADVPIAVVEDVDEALADIARVFYGDPSKALT 207

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP---SPIYLAKA 173
            +A+TG+ GK++ +  V+ + + + +    +G                      +   + 
Sbjct: 208 AIALTGSVGKTTTSYLVKAVFEEADIRMGLVGSNGNYVGDELKLTAQGGRGSDALQFQQL 267

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL--GRDHI-----DYHQTQQAY 226
            + ++  G     +E S+  + +    G+     + T+   G D +     DY      Y
Sbjct: 268 TAGIADNGAQAAVMEVSAEQVRRKATRGMNFDIVALTSPLEGPDAMSDRRKDYRGLDAEY 327

Query: 227 FNAKMRLFEELLPKESPAIIYADD--------AYSKEVMKRAHNAGCRVLSVGYQ---GK 275
            +    +F+ L   E+   +   D         Y +   + A        SV  +   G 
Sbjct: 328 SSHVAEVFKALEDAETQRAVINVDAIDDNDKTPYHELCKEHAKGVPQLTYSVDPENPNGA 387

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            ++  +V     +  V++S    + + +  L GE  V     A  + +A  I   ++   
Sbjct: 388 DVYPARVDYSLFETAVSLSTPAGNVEVVVGLVGEHMVNAICCATAIGLAAEIPLDVIAAG 447

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---GG 392
           LE    +PGR E V    +   + VD A+T  ++  ++ +++     R+I V GC     
Sbjct: 448 LEATDSIPGRMELVDA-GQDFSVLVDSANTPEAIRSVIDSVKATNCRRVITVIGCEGEMA 506

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI------------ 440
           + ++G+R ++GK   D +D+  VT+D+P++EDP KI  +I  G    I            
Sbjct: 507 ESERGQRAVIGKTVHDHSDVVFVTNDSPKAEDPYKILEDICAGFRDEIYSKPGMEDEALF 566

Query: 441 ---------------------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
                                         +R  AIR AI M  + DV+++ G+G +   
Sbjct: 567 PFLKDMYEVHENAQYECMRLQNLVRRYVMVDRYHAIRAAIGMAERDDVVLIIGRGAKDY- 625

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            V   EK    D    R+ L
Sbjct: 626 FVVGREKHWFDDVVEARDAL 645


>gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
 gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           35/02]
 gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI18]
 gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA6140]
 gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID24-1]
 gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI2]
 gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
          Length = 452

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 151/417 (36%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              ++ GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 55  GGVLSAGAAAVVVSREDCAALGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  + +R          ++T  +F           I L   L  L+ +
Sbjct: 107 TGSGGKTTVKEMLAAVLRR---RFGDDAVSATAGNFNNH--------IGLPLTLLKLNEK 155

Query: 181 G-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
                + +  +  G         K  A    N  R H+            AK  ++  L 
Sbjct: 156 HRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGL- 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA     + +         + G     +  + +       +  +    +
Sbjct: 215 CSDGMALIPQEDANMA--VFKTATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDE 272

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +G  +
Sbjct: 273 RTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIKGATL 331

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 332 IDDTYNANPDSMKAAVDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 388


>gi|309777768|ref|ZP_07672716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914452|gb|EFP60244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 464

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 146/420 (34%), Gaps = 28/420 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +  +I +    +I  L    ++  + +  I  V  DSR +  G +++ I G   +GH ++
Sbjct: 1   MSKMIIRSIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGVNNNGHAYV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA+A++                   +++V++T   L   A     +    ++ +
Sbjct: 61  QQAIEHGAKAVLWERK------EQNPPHEVVVILVEDTTVALQQLAKAYRDQLNLKVVGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +  +            T+ +F  +  +           LS   + 
Sbjct: 115 TGSNGKTSTKDILASVLAK------HFITQKTLGNFNNEIGVP-------LTLLSLSENC 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +   +        + ++      +N+G  H++   T +    AK+ + E L  +
Sbjct: 162 EAAVVEMGMENLNELSFLTNIVRPDIAIISNVGTAHLENLGTMENIAKAKLEIVEGL-NE 220

Query: 241 ESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               I   D    ++   ++      ++ + G +     +        +  +  S+   D
Sbjct: 221 HGLLIYNGDQQLLRDAAVEKQIPGYIKIRTFGKEA-HNDVIVSHVHQLEDGLRFSINEDD 279

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           + +   + G+ Q  NA  A     A+G+    + E    +     R E V  N +   + 
Sbjct: 280 WVYHLDMIGKHQAMNATAAWIAAKALGLSEEEIAEGFASVEKTGLRNELVKVN-QCLILN 338

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             Y     S    +  +        + V G     G+        +GK         ++T
Sbjct: 339 DSYKSNPQSALAAVDTMEEFDIPYKLAVLGDMLELGETSDMIHYTLGKDISRYHIQEVLT 398


>gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 462

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 152/419 (36%), Gaps = 50/419 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+   +    +  ++ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKMT------LAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKFLSLFASRLY-G 111
           FIP             +A +    +     + P+      LVV +  K +   A      
Sbjct: 54  FIP------------VAATAGAVATFVAADHLPVTTKLITLVVPDPLKAMQQLAQYYLLM 101

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++A+TG++GK++       I         Q     T  ++  +  +         
Sbjct: 102 KVNPKVVAITGSNGKTTTKDMTAAILAT------QYHVVKTPDNYNNEIGVPM------- 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS   +  V  + +     G         +      T +G  HI++ +T+    +AKM
Sbjct: 149 TILSMEPNTEVLVLEMGMDRPGQLHALSTLAEPDVAVITMIGEAHIEFFKTRDKIADAKM 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQ 290
            + + L   +   I   D+   +E   RA        + G   +  I    +    N  +
Sbjct: 209 EITDGL-KDDGTFIFNGDEPLLQE---RAKKITQERETFGLHPENTIFAHSISGHRNHTE 264

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+     D  F  P+ GE+ V NAL A  +     +   ++ + L    V   R +++ 
Sbjct: 265 FTVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHVKPEIMQKALAHFQVTANRTQWL- 322

Query: 351 TNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL 407
               G +I  D Y     +++ ++ +    T+ GR I V G   +  +    +   +A 
Sbjct: 323 IGDVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHIAVLGDMLELGEQSPALHASLAE 381


>gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
 gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
          Length = 463

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 151/417 (36%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 12  MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFV 65

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              ++ GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 66  GGVLSAGAAAVVVSREDCAALGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  + +R          ++T  +F           I L   L  L+ +
Sbjct: 118 TGSGGKTTVKEMLAAVLRR---RFGDDAVSATAGNFNNH--------IGLPLTLLKLNEK 166

Query: 181 G-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
                + +  +  G         K  A    N  R H+            AK  ++  L 
Sbjct: 167 HRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGL- 225

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA     + +         + G     +  + +       +  +    +
Sbjct: 226 CSDGMALIPQEDANMA--VFKTATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDE 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +G  +
Sbjct: 284 RTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIKGATL 342

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 343 IDDTYNANPDSMKAAVDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 399


>gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 483

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 86/487 (17%), Positives = 160/487 (32%), Gaps = 49/487 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  ++  + ++   I       R  N VS DSR    G +FVAI G   DGH F+ +   
Sbjct: 4   MSVEEIAKAVDGRLIGDADSESRSTNTVS-DSRQAGPGSVFVAIRGEHVDGHDFVAKTAG 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAV 120
           QGA   +V                 P +VV +T   L   A     +  E     +I+ +
Sbjct: 63  QGATVAIVDHEVE--------SDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGL 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +    G +   +G                        AL      
Sbjct: 115 TGSVGKTTTKDLLSSLLATVGPTVAPVG-------------SFNNEIGLPLTALRVDEHT 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + AS  G                  +G  H+    +++    AK  + + LLP 
Sbjct: 162 RFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLP- 220

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGK 298
              A++ ADD +   +   A            Q   +    V A    + +   +  +G 
Sbjct: 221 GGTAVLNADDEHVVPMAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGN 280

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR- 357
                  +PG   V NAL AA + +  G+    V   L   H +      + T +R G  
Sbjct: 281 HTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTS 340

Query: 358 -IYVDY--AHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +D       +S++  L  ++   S        + + G   +    +  +   I    
Sbjct: 341 FTLIDDSFNANPDSMKAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYA 400

Query: 410 ADI---AIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLN--KQ 459
           A++   AI+   + + +  + +   +  G             +   A +  I++      
Sbjct: 401 AELGIDAIIAVGSAQDQHLDALAQALADGARQSPSASVDCVHDIDAAEQLVIDLARNHPD 460

Query: 460 DVLVVAG 466
            V+++ G
Sbjct: 461 AVVLLKG 467


>gi|256379769|ref|YP_003103429.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
 gi|255924072|gb|ACU39583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
          Length = 490

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 91/499 (18%), Positives = 158/499 (31%), Gaps = 73/499 (14%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF------ 59
           L   +  E++    +            V  D+R +  G +F+A+ G + DGH F      
Sbjct: 4   LTLAEIAEIVGG-RLHGTDGSPVVKAGVEFDTRKLLPGGLFLALPGERVDGHDFAAAAVA 62

Query: 60  -------------IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN------TRK 100
                         P  IA                  A       +L  D+         
Sbjct: 63  AGAAGVLAGREVPAPSVIA-------------PPVAPADEHEGAYVLSGDSDGSGAAVLA 109

Query: 101 FLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            L   A  +  +       ++ VTG+SGK+S    + Q+   +G +    G  +      
Sbjct: 110 ALGKLARHVTDRLTAGGLTVVGVTGSSGKTSTKDLIAQVLSPTGATIAPPGSFNNELGHP 169

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                      YL   LS             A   G             G+  N+G  H+
Sbjct: 170 WTALRADEDTGYLVLELS-------------ARGPGHIADLCAVAPPRIGAVLNVGTAHL 216

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               +++     K  L E L P++  A++ ADD     V+  A     +V+ VG   +  
Sbjct: 217 GEFGSREGVARTKGELVEAL-PEDGVAVLNADDPL---VLAMAERTKAKVVLVGEHSRAQ 272

Query: 278 --HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              +  V     +   T+            + G  QV NAL AA + + +G     V + 
Sbjct: 273 VRAVDIVLDEQARPGFTLLTPHGSARVQLAVHGPHQVGNALTAAAVALELGATPQQVADR 332

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-----TSGRIIVVFG 389
           L     +      V   + G  +  D Y     S++  LK++ TI      + R   V G
Sbjct: 333 LGSAKPISAHRMEVVDRADGVTVVNDAYNANPESVKAALKSLATISRSTTPARRSWAVLG 392

Query: 390 CGGDRDQGK---RPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
              +           +G++A+    +  +V  D+ R+                 I   + 
Sbjct: 393 PMAELGADSVRAHDEIGRLAVRLDVNRLVVIGDDARAMHQGAHLEG--SWGEESILVPDV 450

Query: 446 IEAIRTAIEMLNKQDVLVV 464
             AI    + +   DV++V
Sbjct: 451 AAAIELLRDEVRPGDVVLV 469


>gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
 gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
          Length = 473

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/478 (17%), Positives = 157/478 (32%), Gaps = 51/478 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +   P    +R   +   V  DSR ++ G +F A  G + DGH +   
Sbjct: 1   MIALSLAEIADIVGGQPHDMPDRSLTVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAR- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         A      P +VVD+    L   A  +  +    ++A+TG
Sbjct: 60  ----------AAVEAGAVAVLAARPVGCPAIVVDDVVAALGALACAVVERLGTAVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R   + +  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQLLERKAPTVWTPGSLNNEIGLPLTALTATAETRHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G   +         G   N+G  H+    +++A   AK  L E L P++ 
Sbjct: 158 -VLEMGARGVGHIHYLAQLTPPTIGLVLNVGSAHLGEFGSREAIAQAKGELVEAL-PEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDF 300
            A++ ADD   + +  R      RV+  G         +   + +  +    +       
Sbjct: 216 VAVLNADDPLVRAMAARTQ---ARVVLFGEAPDADVRGENVRLTDDGRPAFALHTPTGCS 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    L GE  V NAL AA +   +G+    + E L     +      V     G  +  
Sbjct: 273 DVTLRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSVAGTLSRWRMEVTERPDGVTVVN 332

Query: 361 D-YAHTSNSLEMILKNIRTITS------GRIIVVFGCGGDRDQGKRPIMGKIA-----LD 408
           D Y     S++  L+ +  +        GR   V G   +           +      L+
Sbjct: 333 DAYNANPESMKAALRALAAMGKAARAEGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLN 392

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +  V       E           G      +   +   A+      L   DV++V
Sbjct: 393 VSKLVAVGG----REASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 446


>gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. WH 7803]
 gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 7803]
          Length = 471

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/483 (16%), Positives = 158/483 (32%), Gaps = 43/483 (8%)

Query: 1   MKLQDLIYKDFPELINQ--LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M LQ        EL  Q   +  P     + +  V +DSR ++ G  F+ + G + DGH 
Sbjct: 1   MTLQ---LSQLVELWGQPLWAGGPAPDLSKALGPVCTDSRTLEPGSFFIPLRGERFDGHR 57

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F+  A+ +GA+A  V+S     D +  +        V +T +     A+    +    ++
Sbjct: 58  FLSSAVERGAQAAFVAS-----DCAHAVPDGLLHWKVADTLEAYQQLATLHRRQLNAAVV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    ++      G                  +             L    
Sbjct: 113 AVTGSAGKTTTRELIRSALAPLGDVQAS-------------DSNNNNDIGVPLTLLGAHR 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S     V +     G  +      +      TN+G  HI    ++ A  +AK  +   L 
Sbjct: 160 SHAAVVVEMGMRGAGEIERLSCCAEPEIAVITNIGTAHIGRLGSRAAIASAKCEITAALS 219

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------------GYQGKFIHLKKVCAIH 286
           P+    +I A DA  ++ + R        +S+            G     +    +  + 
Sbjct: 220 PR-GVVVIPAGDALLEDALSRCWTGRILRVSLEGDEPEGGPDVSGLTSAALPAPDLVGVF 278

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +  +++ +G    F  PL G     N ++A  +   + +        LE + V     
Sbjct: 279 QPEDQSLAFQG--LRFRCPLEGRHNARNFMLALAVASELEVPL----HSLEAMDVAMPGG 332

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                +  G  +  +  + S    +    +     GR   V G   +       +  ++A
Sbjct: 333 RNKRLSMGGVSLLDETYNASPEAVLAALELLAHQPGRRFAVLGTMLELGSRSVELHRRVA 392

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-A 465
               D+ +         D   +       +  F       +A       L   D +++ A
Sbjct: 393 QRAVDLKLDGLVVVAGGDEGDVMEATACSLSRFTRVQTPEDAALPLRGWLKPGDTVLLKA 452

Query: 466 GKG 468
            +G
Sbjct: 453 SRG 455


>gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 464

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 153/415 (36%), Gaps = 30/415 (7%)

Query: 8   YKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           Y  F E++N +S   +   +      VS+D+R I+   IF+A+ G + +G+ +   A  +
Sbjct: 3   YMSFDEIVNAVSGQVIISGKYSGYRNVSTDTRKIEEKDIFIALKGERFNGNKYAAVASDK 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA   +V   Y  +   + I   T ++ V +  + L   A     K    ++ +TG++GK
Sbjct: 63  GASICIVDEVYFKK---SEINECTSVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSAGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +         +     T  +                      +S  V  + 
Sbjct: 120 TTTKDLITSVLS------AKFKVFKTEGNLNNQIG-------LPHMIFRLNNSYDVAVLE 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  ++ G         +      TN+ R HI    T++    AK+ +  +   K++  +I
Sbjct: 167 MGMNNRGEIHSMAKAARPDIAVITNVLRAHIGNLGTRENILAAKLEI-TDFFSKDNTLVI 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD--FL 303
            +D+    +++         +  VG  +   I    +    +     I       +  F 
Sbjct: 226 NSDN----DMLSNLKEDRFNIRRVGLEENSDISAYDIEVKEDFISFNICENNVKMEERFK 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG++ V N+L+A      + +    + E L+ +     R E +    +   I   Y 
Sbjct: 282 VNVPGKYNVLNSLLAVACGRILNMTYGEIREGLKNIETTAMRME-ICKGKKFNVINDSYN 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414
               S++  +  ++   S R + V G     GD        +GK A +   DI I
Sbjct: 341 ANPESMKAAIDVLKNFKSKRRVAVLGTMGELGDESCRMHEEVGKYAGENGIDILI 395


>gi|297571249|ref|YP_003697023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931596|gb|ADH92404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 470

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 148/449 (32%), Gaps = 28/449 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  +++D+R I  G +FVAI G + DG+ F   A+  GA A++ +   +     A  
Sbjct: 23  DSLVTSIATDNRTISGGELFVAIAGERVDGNRFAQAALDAGAVAVLTADPAAACATGAAP 82

Query: 87  RSNTPILVVDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                ++ VD+    L   A       R  G     ++ VTG+ GK++    +  +  + 
Sbjct: 83  ER---VIAVDDPIVALGRLAHEQAHIVRKCGAENFQVIGVTGSVGKTTTKDLLAHLLGQR 139

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G      G  +              S   L              + + A   G   +   
Sbjct: 140 GPIIAPPGSFNNELGMPLTVLRADESTSTL-------------VLEMGADHIGNLAYLTG 186

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +         + R H+      +    AK  L E    +    ++  DD   +++ K A
Sbjct: 187 IVAPDVSVVLAVARAHLGEFGGIENVARAKSELVEG-TREGGVVVLNYDDERVRDMAKLA 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                   + G     +    V      Q    +     +      L G   V NAL AA
Sbjct: 246 PGKVVYFSASGACRDGVWASDVTLNKTGQASFILHYGQSESRVELKLIGAHHVANALAAA 305

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            + +  GI+       L + +        V     G  I  D Y    +S++  L  +  
Sbjct: 306 TVALVCGIELDDCARLLTEANAGSPHRMDVW-ERNGTTIIDDSYNANPDSMKAGLTALAH 364

Query: 379 I-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           + T  R I V G   +  +        I   +A + I T           I      G+ 
Sbjct: 365 LGTHRRKIAVLGTMLELGEESEAEHAHIGELVAQLGIDTLIAVGPGLSPTILTARQGGV- 423

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              E  N  EA +    +L + DV+++ G
Sbjct: 424 EVHETLNVAEATQLLTGLLAEGDVVLLKG 452


>gi|295086462|emb|CBK67985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 431

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 157/438 (35%), Gaps = 35/438 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    I  + 
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIID------EIQYAIEGDQ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYILVDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P  L   L       +  + + A+  G  +   +  +   G  T
Sbjct: 126 --------NLNNHIGVPTTL---LRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  K++   I+ D+ Y   +     + G  ++S 
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNPYLMNI-----SQGLNLISY 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G +       ++               +G+       L GE+   NAL A  +    G++
Sbjct: 230 GTEDDLYVNGRITGNSPYLAFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVE 289

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  + E L +      R +   T      I   Y     S+   L+N + +T    +++ 
Sbjct: 290 AKKIDEALAEYTPQNNRSQLKKTEDN-TLIIDAYNANPTSMMAALQNFQNMTVPHKMLIL 348

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           G   +          KI        I   D    E    +  +       F    +  E 
Sbjct: 349 GDMRELGADSPAEHQKIVDY-----IKESD---FEKVWLVGEQFATSEHSFKTYADVQEV 400

Query: 449 IRTAIEMLNKQDVLVVAG 466
           I+   E   K   +++ G
Sbjct: 401 IKDLQEDKPKGYTILIKG 418


>gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
 gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
          Length = 471

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 153/471 (32%), Gaps = 39/471 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR +++G +FVA  G + DGH F   
Sbjct: 1   MIALSLAEIAAVVGGQTYDIPDPAVQVTGPVVRDSREVESGSLFVAFAGERVDGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                                A+     P +VVD+ +  L   A  +  +    ++A+TG
Sbjct: 60  ----------AVVEAGAVAVLASRPVGVPAIVVDDVQTALGALARHVVERLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +    + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLRSKAPTVFTPGSLNNEIGLPLTALSATEETKFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--K 240
             + + A   G  ++  D      G   N+G  HI     ++    AK  L E L P   
Sbjct: 158 -VLEMGARGIGHIRYLADLTPPKVGLVLNVGTAHIGEFGGREQIAQAKGELVEGLPPAED 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ-QVTISVEGK 298
              AI+ ADD   + +  R      RV+  G      +  + V      Q   ++     
Sbjct: 217 GGAAILNADDPLVRAMASRTK---ARVILFGESDEADVRAENVRLTAGGQPSFSLHTPSG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+ +  +   L +   +      V     G  +
Sbjct: 274 CSDVTMRLYGEHHVSNALAAAAVAHELGMSADEIARALSEAGSLSRWRMEVTERPDGVTV 333

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             D Y     S+   L+ +  +  GR    V G   +           +      + +  
Sbjct: 334 VNDAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGK 393

Query: 417 DDNPRSEDPEKI-RAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +   +       G      +   +   A+      L   DV++V
Sbjct: 394 LVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 444


>gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 462

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 148/412 (35%), Gaps = 29/412 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +  +I +    +I  L    ++  + +  I  V  DSR +  G +++ I G   +GH ++
Sbjct: 1   MNHMIIRSIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGANNNGHAYV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A++           A       +++VD+T   L   A     +    ++ V
Sbjct: 61  QQAIDNGARAVLWER------REANPPKEIVVILVDDTTAALQQLAKAYRDQLNMKVVGV 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +  +            T+ ++  +  +           LS   + 
Sbjct: 115 TGSNGKTSTKDILASVLAK------HFITQKTLGNYNNEIGVP-------LTLLSLSENC 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +   +          ++      +N+G  H++   T +    AKM + E L  +
Sbjct: 162 EAAVVEMGMENLQELSFLTQIVRPDIAIISNVGTAHLENLGTMENIARAKMEITEGL-GE 220

Query: 241 ESPAIIYADDAYSK-EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGK 298
               I   D    +   +++      ++ + G  +   + + +V  + +    +I    K
Sbjct: 221 HGLLIYNGDQQLLRNAAIEKQIPGCIKIRTFGKDEQNDVVVHQVRQLPDGLCFSI----K 276

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  +   + G+ Q  NA  A     A+G+D   + +    +     R E V  N +   +
Sbjct: 277 DQVYHLDMIGKHQAMNATAAWIAARALGLDEEEIAQGFASVEKTGLRNELVRVN-QCLIL 335

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              Y     S    +  +        + V G   +  +    I   +  D++
Sbjct: 336 NDSYKSNPQSALAAVDTMEEFDIPYKLAVLGDMLELGETSDMIHYTLGKDIS 387


>gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 483

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 92/490 (18%), Positives = 166/490 (33%), Gaps = 55/490 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  ++  + ++   I       R  N VS DSR    G +FVAI G + DGH F+ +   
Sbjct: 4   MSVEEIAKAVDGRLIGDAGSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVAKTAG 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAV 120
           QGA   +V                 P +VV +T   L   A     +  E     +I+ +
Sbjct: 63  QGATVAIVDHEVK--------SDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGL 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +    G +   +G                        AL      
Sbjct: 115 TGSVGKTTTKDLLSSLLATVGPTVAPVG-------------SFNNEIGLPLTALRVDEHT 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + AS  G                  +G  H+    +++    AK  + + LLP 
Sbjct: 162 RFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLP- 220

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIH--NKQQVTISV 295
              A++ ADD +   V+  A  A   VL  G    Q   +    V A    + +   +  
Sbjct: 221 GGTAVLNADDEH---VVPMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDA 277

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G        +PG   V NAL AA + +  G+    V   L   H +      + T +R 
Sbjct: 278 DGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNRE 337

Query: 356 GR--IYVDY--AHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKRPIM---G 403
           G     +D       +S++  L  ++   S        + + G   +    +  +    G
Sbjct: 338 GTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIG 397

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLN- 457
             A +L   AI+   + + +  + +   +  G             +   A +  I++   
Sbjct: 398 TYADELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARN 457

Query: 458 -KQDVLVVAG 466
               V+++ G
Sbjct: 458 HPDAVVLLKG 467


>gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 459

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 150/424 (35%), Gaps = 47/424 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ L      E +N     P     + IN + +DSR  Q+G +FVA++G   D H F+  
Sbjct: 6   MKTLTLNFICETLN----LPKPQTNQTINRIITDSRQAQSGDLFVALIGENHDAHDFVAD 61

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +A+GA A+V    +               L VD+T   L   A          +  +TG
Sbjct: 62  VLAKGALALVSRDDFVGVSG---------CLKVDDTLIALQKLAKAWRQVINPFVFGITG 112

Query: 123 TSGKSSVASFVQ----------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +SGK++V   +            +   +G  +  IG   T+ +  +++R           
Sbjct: 113 SSGKTTVKEMLATVLREKFGADAVLATAGNFNNHIGLPLTLLNLRENHRY---------- 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKM 231
                       + +  +  G         +       N  R HI            AK 
Sbjct: 163 ----------AVIEMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCGFNGVDDIARAKS 212

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            +++  + ++  AI+  DDA          N   +  + G+    IH + +       + 
Sbjct: 213 EIYQG-IQQDGLAILPIDDANLPIFQAACKNLNLQTQTFGFAQGDIHAENLVLQPLASEF 271

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +      P+ G   V NA  AA L +A G+    +   L     + GR + V  
Sbjct: 272 DLIQGSECVHITLPVAGRHNVSNACAAAALALAGGVKLTEIARGLANFANIKGRLQ-VKH 330

Query: 352 NSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +   I  D Y    +S++  L  +  + + R+ V+   G   +     +  +I +   
Sbjct: 331 GIKNSTILDDTYNANPDSMKAALDVLAKMPAPRVFVMGDMGELGENEAPKMHEEIGIYAK 390

Query: 411 DIAI 414
           ++ I
Sbjct: 391 NLGI 394


>gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
 gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
          Length = 482

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 165/464 (35%), Gaps = 34/464 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           F     +R    V  DSR +    +FVA  G + DG+ F P AI  GA A+V++   + +
Sbjct: 17  FVAGDPDRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVVMTCEPTRE 76

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                +   + ILV ++  +FL   A     +    ++ +TG+ GK++    +     + 
Sbjct: 77  LVDLALEHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDVLAACLAKR 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                  G  +++                L              + +  S  G  +    
Sbjct: 137 YRVHATAGNFNSLIGLPLTILSAPADTQML-------------VLEMGMSDFGEIERLSR 183

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-------EELLPKESPAIIYADDAYS 253
             +   G  T +G  HI    +++    AK  +        E      S  +++ +D ++
Sbjct: 184 CAQPTFGIITKVGTSHIGMLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFT 243

Query: 254 KEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGE 309
             +++  A  AG  V+  G             +         +   +G  F     +PG 
Sbjct: 244 PFIIENFARPAGLDVVLAGTSTDDDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPGA 303

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AA +   +G+    + E   +L +   R + V   + G R+  D Y  +  S
Sbjct: 304 QSVPNALFAAAVAHRLGVPGFEIDEAFGELQMTGRRTQ-VRHAACGARVIDDSYNASPES 362

Query: 369 LEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMG-----KIALDLADIAIVTDDNPRS 422
           +   L    T+  +G  I V G  G+       +         A   + +  V  +N R 
Sbjct: 363 MAAGLNLFSTLPCTGSRIAVLGEMGELGDDAERLHALVGAYAAAKRPSMLICVGGENARV 422

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    +  G    +   + +  IR    ++ ++D+++V G
Sbjct: 423 MADAARLMGLDEGDVQVVPSCDAL--IRRYAGVMGERDLVLVKG 464


>gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 440

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 149/408 (36%), Gaps = 42/408 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   + +  Q  +  +N++  DSR I+ G IF+ + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDW-SQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA                        L+VD+        A     K    ++AV
Sbjct: 56  EIAFDNGAIISFSEKEVEQAH-----------LLVDDNLAAFQTLAKYYLEKTKVPVIAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +   +    G  +                  L      +   
Sbjct: 105 TGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNNEIGLPYTILHMPEDTEKL------VLEM 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+ H         L Q             T +G  H+++  +++     KM +   L  +
Sbjct: 159 GMDHPGDIDFLSQLAQ-------PELALITLIGEAHLEFMGSRENIAKGKMGITAGLHGE 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    +A+  E          ++   G  G+ + + K+  I +K+++T      D 
Sbjct: 212 LIAPADPIINAFIPE--------NQKISRFGLPGEDLFITKL--IEHKERLTFETNFLDE 261

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG++   NA++AA + +  G+  A +   L+++ +   R E+  + +    +  
Sbjct: 262 SITIPVPGKYNATNAMLAAYVGLHYGLTEAEIKNALKEVELTRNRTEWNKSKNGADLLSD 321

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKI 405
            Y     ++ +IL+  + I     GR I V     +       +  ++
Sbjct: 322 VYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPTAAQLHKEV 369


>gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 463

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 176/482 (36%), Gaps = 59/482 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                 S  P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------SGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPDD 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D   L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRNKIAQGKMQIVDG-MN 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +   I   D   D Y  E           V+  G Q +   +       +K  +T +  
Sbjct: 211 SDGILIAPGDPIIDPYLPE--------NQMVIRFGNQQE---IDVTGIQEDKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD---- 408
            I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++       
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSG 378

Query: 409 LADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
             D  +   D+         +   AE +H      E+ ++ EA+   ++ +LN  D +++
Sbjct: 379 NIDQLVFYGDHIKELARLASQVYPAEQVHYFLK-TEQEDQFEAMAQYVQNILNPFDQILL 437

Query: 465 AG 466
            G
Sbjct: 438 KG 439


>gi|319947393|ref|ZP_08021625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
 gi|319746333|gb|EFV98594.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
          Length = 456

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 173/457 (37%), Gaps = 51/457 (11%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q+ +  + +   DSR I  G +FV +   + DGH FI  A   GA A +           
Sbjct: 20  QFEDFDLQKPEFDSRLIGKGDLFVPLKVAR-DGHDFIETAFENGAVATLSEKEVE----- 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P L+VD+        A  +  K   ++LAVTG++GK++    + Q+   +  +
Sbjct: 74  -----GHPYLLVDDVLGAFQKLAQYVLEKSQVDVLAVTGSNGKTTTKDMLAQLLSTTYKT 128

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
               G                 + I L   + ++       V      H  D H L  I 
Sbjct: 129 YKTQG--------------NYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSEIA 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A   T +G  H+++ + +      K+++ +  +P     ++ AD      +++    
Sbjct: 175 HPKAAIVTLIGEAHLEFFKDRTEIAKGKLQIADG-MPAGGLLLVPADP-----IVEDFLP 228

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               ++  G +G  I + K+     K  +T      +     P+ G++   NA++A+ + 
Sbjct: 229 NQQELVRFG-EGADIRITKL--DERKDSLTFEANFLEEAIDLPVTGKYNATNAMIASYVA 285

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-- 379
           +  G+    +    + L +   R E+      G  I  D Y     ++ +IL+   TI  
Sbjct: 286 LKEGVSEEAIRASFKGLELTKNRTEW-KKAGNGADILSDVYNANPTAMRLILETFSTIPA 344

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEI-- 432
             +GR + V     +  +    +  ++ L L+    D  I    +       ++ +++  
Sbjct: 345 NPNGRKLAVLADMKELGEQSIDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFP 402

Query: 433 ---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              ++      E+    + ++   E L +QD +++ G
Sbjct: 403 LGHVYYFKKTAEEDQFEDLVKQVKESLKEQDQILIKG 439


>gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
 gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
          Length = 473

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 158/456 (34%), Gaps = 49/456 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R I+ G +FVA+   + DGH F+ QA  +GA A +V+      D +       
Sbjct: 24  TGVSIDTRTIEPGDLFVALAAAR-DGHEFVAQAFQKGASAALVNHVPDGMDAAK------ 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             LVVD+    L    +    +    ++A+TG+ GK++V   ++Q     G     +   
Sbjct: 77  -CLVVDDVLAALERLGTAARTRTQAKVIAITGSVGKTTVKDMLKQALSGQGKIHAAV--- 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                       +  +   +   LS +        + +  S+ G         +      
Sbjct: 133 -----------ASYNNHWGVPLTLSRMPVDTDYAVIEIGMSAPGEIAPLSRMARPHVAMI 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++     +     K  +FE L P +  AI+  D   +  + + A      V++
Sbjct: 182 TTIAPAHLEAFGRIEGIAEEKASIFEGLEP-DGVAIVPMDVETAPILARAAVAHAAEVVT 240

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  +G  + L  V    +   + I+ +         + G     NA+       A G D
Sbjct: 241 FGEAEGADLRLTDVMLSDDSTVMRIATDEGGRLAKLSVSGRHYAVNAVGVLCAVAASGAD 300

Query: 329 SALVLEHLEKLHVV-----PGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS- 381
           +      L     V       R +   T+     +  D +     SL   L+ +  IT  
Sbjct: 301 TTQAAMALSHWQPVEGRGQRERIQLSRTDDIAIELIDDAFNANPTSLAAGLEVLAAITPE 360

Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIA---LDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             GR I V G   +       +   IA      A   + T           +   +   +
Sbjct: 361 RGGRRIAVLGDMLELGDDGAKMHADIASLPAMEAVDIVHT--------CGPLMVHLDAAL 412

Query: 437 PGFIEKGNRIEA--IRTAI-EMLNKQDVLVVAG-KG 468
           PG     +   A  +  A+   L   DV++V G KG
Sbjct: 413 PGAKRGEHTETAQDLCRAVPRTLRPGDVVLVKGSKG 448


>gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis CO72]
          Length = 494

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/471 (19%), Positives = 162/471 (34%), Gaps = 66/471 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R IQAG +F+AI G + D H FI  A  QGA A +V            +  + P 
Sbjct: 35  IVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VVDCDMPQ 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +   +    G  +
Sbjct: 86  LLVADTKLALGDLGRFRREAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLITRGNLN 145

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                       T    +L   L              A+  G   +    ++       N
Sbjct: 146 NDLGVPMMLLELTDEHRFLVIEL-------------GANHLGEIAYTASMVRPDVALILN 192

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H+     +     AK  ++  L  +   AI+   D +  E++K+A       LS G
Sbjct: 193 IGTAHLGEFGGRANIACAKSEIYSALTSQ-GVAILPFSDDFYPELLKQASKFTNLYLSFG 251

Query: 272 YQG---------------------------KFIHLKKVCAIHNKQQVTISV-----EGKD 299
            +                              +    +         T++      +   
Sbjct: 252 ERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDS 311

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P  GE  V NAL AA    A+G+    + + L +     GR   +     G  I 
Sbjct: 312 LPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLPM--DGYCII 369

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     S+    K +      +I+V   +F  G   D     +  ++AL   D   +
Sbjct: 370 DDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-L 428

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           T  N  +     I  E       + +K + ++ +R  +   +    ++  G
Sbjct: 429 TLGNHMAHTAAAI-NEQKPIARHYTDKPSLLKDLRQLLSHGSA--TVLFKG 476


>gi|301800481|emb|CBW33120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae OXC141]
          Length = 457

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/479 (17%), Positives = 177/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ +  + 
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG-MA 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  ++ AD      +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 211 SGSLLLVPADP-----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P          E  ++ E  ++   E L+  D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKG 439


>gi|260767161|ref|ZP_05876104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
 gi|260617835|gb|EEX43011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
          Length = 453

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 154/414 (37%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  VS+D+R I    +FVA+VG + D H F  QA+A GA+A++V  A  +     
Sbjct: 19  GDDTDIAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERALDV----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P LVV NT+  L    S ++ +     +A+TG+ GK++V   V  I    G   
Sbjct: 74  ----NVPQLVVSNTKTALGQLGSWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F      T  +F  D  +           L          + + A+  G   + +  +K 
Sbjct: 130 F------TAGNFNNDIGVP-------LTLLRSTPQDDYAVIELGANHIGEIAYTVGLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L      A++  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLSAGY-TAVVNLDSQGGALWQSVLADKS 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  SV       + + +      +    +     D      + G+  V NAL A+ L I
Sbjct: 236 VKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAASALAI 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  +   ++ R
Sbjct: 296 EMGATLADIQHGLAHLSKVKGRVDVTELTDHITLIDDSYNASVPAMKAAVDLLGGFSATR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       ++       +G+ A       ++T       D  K+ +++ HG
Sbjct: 356 WLILGNMAELGEESLALHQQVGEHAAPFQFDYVLT----YGHD-AKVISDVCHG 404


>gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium longum subsp. longum F8]
          Length = 480

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 92/490 (18%), Positives = 166/490 (33%), Gaps = 55/490 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  ++  + ++   I       R  N VS DSR    G +FVAI G + DGH F+ +   
Sbjct: 1   MSVEEIAKAVDGRLIGDAGSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVAKTAG 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAV 120
           QGA   +V                 P +VV +T   L   A     +  E     +I+ +
Sbjct: 60  QGATVAIVDHEVK--------SDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGL 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +    G +   +G                        AL      
Sbjct: 112 TGSVGKTTTKDLLSSLLATVGPTVAPVG-------------SFNNEIGLPLTALRVDEHT 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + AS  G                  +G  H+    +++    AK  + + LLP 
Sbjct: 159 RFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLP- 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIH--NKQQVTISV 295
              A++ ADD +   V+  A  A   VL  G    Q   +    V A    + +   +  
Sbjct: 218 GGTAVLNADDEH---VVPMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDA 274

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G        +PG   V NAL AA + +  G+    V   L   H +      + T +R 
Sbjct: 275 DGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNRE 334

Query: 356 GR--IYVDY--AHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKRPIM---G 403
           G     +D       +S++  L  ++   S        + + G   +    +  +    G
Sbjct: 335 GTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIG 394

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLN- 457
             A +L   AI+   + + +  + +   +  G             +   A +  I++   
Sbjct: 395 TYADELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARN 454

Query: 458 -KQDVLVVAG 466
               V+++ G
Sbjct: 455 HPDAVVLLKG 464


>gi|270295564|ref|ZP_06201765.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274811|gb|EFA20672.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 432

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 142/386 (36%), Gaps = 42/386 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F  +A+  G+   +V       +       +T
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPEG------DT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK-------SSVASFVQQICQRSGLS 143
             +VV+N+ K L   A+    +    I+ +TGT+GK       S+V S    +    G  
Sbjct: 68  RYIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  IG   T+                    L       +  V + AS  G  +  ++  +
Sbjct: 128 NNHIGVPLTL--------------------LRLRPEHDLAVVEMGASHPGDIKELVEIAE 167

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHN 262
              G  TN+G+ H++   + +     K  +++ L   KE+   I+ D+ Y K++    H 
Sbjct: 168 PDYGIITNVGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQ 227

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAG 320
                ++ G +        V             + +    +    L GE+   NAL A  
Sbjct: 228 -----IAYGSEDGLYINGHVTGNSPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVT 282

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +    G++   + + L        R +   T      I   Y     S+   + N R + 
Sbjct: 283 IGHFFGVEPEKIDKALAGYTPQNNRSQLKKTADN-TLIIDAYNANPTSMMASISNFRNMQ 341

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +   +++ G   +  +       KIA
Sbjct: 342 AENKMLILGDMRELGKDSADEHQKIA 367


>gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 484

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 172/475 (36%), Gaps = 46/475 (9%)

Query: 6   LIYKDFPELINQ-LSIFPMQWRERKINEVS-SDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L   +  E ++  L +      +  ++ V  +DSR I  G IFVA  G + DGHLF P A
Sbjct: 19  LTLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIGPGGIFVAKPGEETDGHLFAPWA 78

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILA 119
           +  GA  ++V     L           P ++V +    L   A  +  +        ++A
Sbjct: 79  VEAGAALLLVERELDLP---------VPQVLVPDVVDALGRLAHEVVARVRALGELRMVA 129

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG++GK++  + +  I +  G +   +   +            T S  +L         
Sbjct: 130 VTGSNGKTTTKNLLHAILETQGETVSPVASFNNEVGAPLTMLKVTRSTRFLVAE------ 183

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  + AS  G     +   K   G    +G  H       +     K  + ++LLP
Sbjct: 184 -------MGASGLGEITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLP 236

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV-EG 297
           ++  A++ ADD     V   +      VL  G   +  +    + A       T+ + +G
Sbjct: 237 ED-TAVLNADDP---RVASMSDKTQAPVLWFGRDARAAVRATDIVASAAGTTFTLHLPDG 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F + GE  V NAL AA    A+G+D   ++  L+ +     R+        G  
Sbjct: 293 STRPVSFRVLGEHHVTNALAAAAGAWALGVDGDAIVSALQTVQRA-ERWRMEVLGGNGVT 351

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-------KIALDL 409
           +  D Y  + +S+   L+ +  I       V   G   + G+             + L++
Sbjct: 352 VINDAYNASPDSMAAALRTLAQIRGPEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNI 411

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             + +V     R    E I      G   F E  +  EA      +L   D+++V
Sbjct: 412 GQLVVVGRP-ARRLHLEAIGQGSWDGESIFAE--DAAEAREILDGILRDGDLVLV 463


>gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
 gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
          Length = 468

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 144/381 (37%), Gaps = 19/381 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           LI   +   +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V
Sbjct: 8   LIAHWTGGYLHGEDVRVRAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                          + P +VV +T + L+  AS L       +LA+TG++GK+SV + +
Sbjct: 68  DH--------VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +   S  +           ++             ++           + A   G
Sbjct: 120 VSILEHAAAQSSTV--------VYANSGNRNNEIGLPLAVIAAPDDADFAVYEMGAGKLG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +  D +        N+   H++   +       K  ++  L P    A+I  DDA++
Sbjct: 172 DIGYLTDIVTPDVALVNNIAPAHLERMGSLLGVARTKGEIYAALRP-GGTAVINMDDAFA 230

Query: 254 KEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               ++   AGC VL  G Q    I    +    +  +  +     +      L G   V
Sbjct: 231 LWFEQQCVPAGCAVLRFGLQATADITAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNV 290

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA + +  GI    +   L     VPGR            I   Y     SL++ 
Sbjct: 291 CNALAAAAMALVAGIPLPQIAAGLGLARSVPGRQVAHALPGGAVLIDDSYNANPGSLDVA 350

Query: 373 LKNIRTITSGRIIVVFGCGGD 393
           +  + T  +G   +V G   +
Sbjct: 351 IDTLTT-AAGPGWLVLGDMRE 370


>gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
 gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
          Length = 468

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 155/454 (34%), Gaps = 57/454 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  +++D+R +Q G +FVA+ G++ DGH F+  AIA+GA   VV+  +++         
Sbjct: 29  PVIGITTDTRTLQRGEVFVALQGDRFDGHDFVVAAIAKGALCAVVNREFAVSH------P 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++ V +T +     A     +    I+ VTG+ GK++    +  +    G       
Sbjct: 83  EFPLIPVADTLRAYQTLARSWRDRFSIPIIGVTGSVGKTTTKELISAVLSHHGKVH---- 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T  ++  +  +           L   S      + +     G         +   G 
Sbjct: 139 --KTFGNYNNEIGVP-------KTLLELRSDHDFAVIEMAMRGPGEIADLTRIARPTVGV 189

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267
             N+G  HI    ++ A   AK  L  E +P  S A++  D+   + +M  A        
Sbjct: 190 IVNVGTAHIGRLGSEDAIARAKCELLAE-MPDTSIAVLNHDN---RRLMSTATQVWSGTT 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG- 326
           ++ G +G       +         TI V G   +   PLPG     N L A  +  AI  
Sbjct: 246 ITYGLEG------GILQGELLGHETIRVAG--IELPLPLPGSHNASNFLAALAVLRAIAG 297

Query: 327 --IDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               +  +   L     L +  GR +          +   Y     S    LK +     
Sbjct: 298 WETSAEELYAPLSTGLSLQMPQGRAKRYHLAQDILLLDETYNAGLESTLAALKLLAETPG 357

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHG-- 435
            R I V G   +  +       ++  +      D   +  D             +  G  
Sbjct: 358 NRHIAVLGTMKELGERSLEFHQQVGAETQRLNLDGLFILAD-------LAEAQAMAEGAM 410

Query: 436 IPGFIEKGNR--IEA----IRTAIEMLNKQDVLV 463
           +  FI+  +    +A    I   +  L   D ++
Sbjct: 411 VIDFIDIQDLGSPQAHQLMIDKVLAFLKPGDRVL 444


>gi|183602454|ref|ZP_02963820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683232|ref|YP_002469615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191192|ref|YP_002968586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196598|ref|YP_002970153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218373|gb|EDT89018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620882|gb|ACL29039.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249584|gb|ACS46524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251152|gb|ACS48091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177305|gb|ADC84551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794185|gb|ADG33720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 516

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 106/528 (20%), Positives = 191/528 (36%), Gaps = 52/528 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQW---------RERKINEVSSDSRHIQAGWIFVAIVGNK 53
           LQ    + F E +    I P  W          E     ++ D+R +  G + V   GN 
Sbjct: 5   LQSAARELFAENLLHEIITPHMWTMNAASVENNEVPFTAITYDTRTVTPGSLLVC-KGNF 63

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
                ++ QA   G  A V ++ YS         ++ P L+V + +K LS+ A   Y  H
Sbjct: 64  NP--KYLEQANKLGMAAYVATNDYSA-------YTDAPGLIVSDDKKALSILAQAYY-DH 113

Query: 114 PENILAVTGTSGKSSV------ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           PE  L + G +G             +      +  + F             ++ LTTP  
Sbjct: 114 PERQLTLIGITGTKGKTTTAYYTHAIINALSGNTTALFSSVDNCVDGMHYVESDLTTPES 173

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           +   + +    + G+ ++ +E SS     +R+        +F N+  DHI    H + + 
Sbjct: 174 LDAVRMMREAVNNGMKYLVMEVSSQAYKVNRVYDFHFDVAAFLNISPDHISPIEHPSFEN 233

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLK 280
           Y   K ++           ++     + + +++ A      V +        Q     + 
Sbjct: 234 YLWCKRQIIRN----ADMLVLGERSDHEQLLLEDAELNRVPVSTFALADSPAQSDIADVT 289

Query: 281 KVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                         V+G+        + G+F   NA  A  +   IG+D +     L  L
Sbjct: 290 CAPTNMEHTAFDYFVDGERLGSLTLAMEGDFNYANAAAALAIAHDIGMDVSDP-RALASL 348

Query: 340 HVVPG--RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDR 394
             V    R E +  +       VDYAH   S+  +L  +          I ++ G  G++
Sbjct: 349 ADVRISGRMEEMHDSRSNTLAIVDYAHNFASVNALLDFVEQRYGAEHPHITLITGSAGNK 408

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIR 450
              +R  + K A D     I+T ++  +E  E+I +E+ + +           +R EA++
Sbjct: 409 AYDRREGIVKAAQDRVQKLILTAEDTDTEPIEQICSEMANNVTNEDLDVQTILDRAEAVK 468

Query: 451 TAIEMLNKQD----VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            A++     D    +L++ GKG E      N       D  IIR +  
Sbjct: 469 HAVDEARAADGGLSILLLIGKGDEQWIKDRNIHTPYEGDSQIIRRLFA 516


>gi|253571213|ref|ZP_04848620.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839166|gb|EES67250.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 432

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/437 (18%), Positives = 159/437 (36%), Gaps = 36/437 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  +A+  G    V+  +         I  +   
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDES------EYAIEGDQRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  + L   A+    +    ++ +TGT+GK++    +  +  RS    + +G    
Sbjct: 70  ILVDDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSRSHNILYTLG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P  L   L   +   +  + + A+  G  +   +  +   G  TN+
Sbjct: 126 ------NLNNHIGVPSTL---LRLKTEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++ L  KE     I+ D+AY   + +     G  ++  G
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDFLRKKEGSTVFIHHDNAYLMNIAE-----GLNLIPYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +       ++               +GK +     L GE+   NAL A  +    G++ 
Sbjct: 232 TEDDLYVNGRITGNSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVED 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A + E L        R +   T+     I   Y     S+   L+N R +     +++ G
Sbjct: 292 AKINEALSGYTPQNNRSQLKKTDDN-TLIIDAYNANPTSMMAALQNFRNMEVPHKMLILG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
              +          KIA  L + A         E    +  +       F    N  E I
Sbjct: 351 DMRELGAESAAEHQKIADYLKECA--------FEKVWLVGDQFAAAEHSFQTYPNVQEVI 402

Query: 450 RTAIEMLNKQDVLVVAG 466
           +       K   +++ G
Sbjct: 403 KELEADKPKGYTILIKG 419


>gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxidans DMS010]
 gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxydans DMS010]
          Length = 451

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 136/387 (35%), Gaps = 28/387 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L      E++   +I+     + K++    D+R IQAG +F+A+ G   DGH ++ Q  
Sbjct: 4   NLTLNQVAEIVACDAIYA----DIKVSGAVVDTRKIQAGDLFIALKGEHVDGHDYLAQ-- 57

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
                     +  +    S       P LVV + RK  +  A     +    ++A+TG++
Sbjct: 58  -------AREAGAAAALVSEIQDDALPQLVVADVRKAFAHIARAWQQQCKARVVAITGSN 110

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+SV   V  + ++ G  +   G  +                 +               
Sbjct: 111 GKTSVKEMVTTMLKQVGSVTATQGNLNNELGVPLTLSCLNQDDDF-------------AV 157

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  + HG     ++ +        N+   H+    + +     K  +++ L      A
Sbjct: 158 IEMGTNHHGEIAELVNIVVPDIAVINNIAAAHLAGFGSLEGVAKEKGAIYDGL-AANGIA 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ AD  Y +       +      S+  +   I    +          ++++     F  
Sbjct: 217 VVNADMPYQRLWQPLIGDRKTISFSLESEAD-IKADYIQLDPASSHFLVNIDDVSHHFNL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   V NAL A  + +A+ I    +++ L  +  VP R +     +    I   Y  
Sbjct: 276 PLPGMHNVNNALAAIAVAVALDIPVDAMVKGLSLMRSVPHRLQVRQGVNDSRLIDDTYNA 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG 391
              S    L  +        +V+   G
Sbjct: 336 NPGSYLQALNTLTAFQGEHWLVLGDFG 362


>gi|191639474|ref|YP_001988640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239630392|ref|ZP_04673423.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301067545|ref|YP_003789568.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|190713776|emb|CAQ67782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239526675|gb|EEQ65676.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300439952|gb|ADK19718.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|327383569|gb|AEA55045.1| MurF [Lactobacillus casei LC2W]
 gi|327386761|gb|AEA58235.1| MurF [Lactobacillus casei BD-II]
          Length = 462

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 153/419 (36%), Gaps = 50/419 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+   +    +  ++ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKMT------LAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKFLSLFASRLY-G 111
           FIP            ++A +    +     + P+      LVV +  K +   A      
Sbjct: 54  FIP------------AAATAGAVATFVAADHLPVTTKLITLVVPDPLKAMQQLAQYYLLM 101

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++A+TG++GK++       I         Q     T  ++  +  +         
Sbjct: 102 KVNPKVVAITGSNGKTTTKDMTAAILAT------QYHVVKTPDNYNNEIGVPM------- 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS   +  V  + +     G         +      T +G  HI++ +T+    +AKM
Sbjct: 149 TILSMEPNTEVLVLEMGMDRPGQLHALSTLAEPDVAVITMIGEAHIEFFKTRDKIADAKM 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQ 290
            + + L   +   I   D+   +E   RA        + G   +  I    +    N  +
Sbjct: 209 EITDGL-KDDGTFIFNGDEPLLQE---RAKKITQERETFGLHPENTIFAHSISGHRNHTE 264

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+     D  F  P+ GE+ V NAL A  +     +   ++ + L    V   R +++ 
Sbjct: 265 FTVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHVKPEIMQKALAHFQVTANRTQWL- 322

Query: 351 TNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL 407
               G +I  D Y     +++ ++ +    T+ GR I V G   +  +    +   +A 
Sbjct: 323 IGDVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHIAVLGDMLELGEQSPALHAGLAE 381


>gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 458

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 150/413 (36%), Gaps = 28/413 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +   +  INE+  D++ I  G +F+A++G K D H+FI  A+ +   A V  
Sbjct: 9   IALITNGTLYGADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      I+ + P ++V+NT   L   A  +  K    ILA+TG+ GK+SV     
Sbjct: 69  K---------NIKPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +++G         STI +   +  +           L          + + AS  G 
Sbjct: 120 SILRKNGN------TISTIDNLNNNIGVP-------MTLLQLKQEHKYGVIELGASKPGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  +  +       N+   H+   ++      AK  +F  L P  S  II  D  +  
Sbjct: 167 IAYTSNISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKP-NSTVIINLDSHHFS 225

Query: 255 EVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +  K   N+     S+  +         +    +    T+       +   P  G   + 
Sbjct: 226 QWKKDIKNSNILFFSIKKKKYSNFFCSNIKIHIHSTSFTMHTPCGKINISLPFLGYQNIS 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A+    A+ I    +   L    +V  R E +        I   Y    +S+   +
Sbjct: 286 NALAASAFSFALKIPLKKIKIGLLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAI 345

Query: 374 KNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           K +  +  G  I+V G      +       ++G  A   A   I +  +  SE
Sbjct: 346 KVLERM-PGYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSE 397


>gi|307707044|ref|ZP_07643841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
 gi|307617570|gb|EFN96740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
          Length = 457

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 176/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+     +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLR---IHEVAQVVGAKNDISI-FEDTQLEKTEFDSRLITTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +     +          N P ++VD+        A+    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  +        T +G  H+ + + +      KM++ +  + 
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG-MS 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  +  AD      V++       +V+  G   +   L+    +  K  +T      +
Sbjct: 211 SNSLLLAPADP-----VVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLN 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQHLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNR---IEAIRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P      F +  +R    + ++   E L   D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDRDQFEDLVKQVKESLGTNDQILLKG 439


>gi|194396936|ref|YP_002038284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
 gi|4009466|gb|AAC95436.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae G54]
 gi|194356603|gb|ACF55051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
          Length = 457

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/479 (17%), Positives = 176/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQDLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P          E  ++ E  ++   E L+  D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKG 439


>gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 440

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 148/408 (36%), Gaps = 42/408 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   + +  Q  +  +N++  DSR I+ G IF+ + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDW-SQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA                        L+VD+        A     K    ++AV
Sbjct: 56  EIAFDNGAIISFSEKEVEQAH-----------LLVDDNLLAFQKLAKYYLEKTKVPVIAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +   +    G  +                  L          
Sbjct: 105 TGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNNEIGLPYTILHMPDDTEKL---------- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G      +  K      T +G  H+++  +++     KM +   L   
Sbjct: 155 ---VLEMGMDHPGDIDFLSELAKPELAVITLIGEAHLEHMGSRENIAKGKMGITAGL--- 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I  AD      ++        +++  G  G+ + + K+  + +K+++T      D 
Sbjct: 209 HGELIAPADP-----IINAFIPDNQKIIRFGLPGEDLFITKL--VEHKEKLTFETNFLDE 261

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG++   NA++AA + +  G+  A + + L+++ +   R E+    +    +  
Sbjct: 262 SITIPVPGKYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLLSD 321

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKI 405
            Y     ++ +IL+  + I     GR I V     +       +   I
Sbjct: 322 VYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPSAAQLHKDI 369


>gi|315181134|gb|ADT88048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           furnissii NCTC 11218]
          Length = 453

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 153/414 (36%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  VS+D+R I    +FVA+VG + D H F  QA+A GA+A++V  A  +     
Sbjct: 19  GDDTDIAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERALDV----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P LVV NT+  L      ++ +     +A+TG+ GK++V   V  I    G   
Sbjct: 74  ----NVPQLVVSNTKTALGQLGCWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F      T  +F  D  +           L          + + A+  G   + +  +K 
Sbjct: 130 F------TAGNFNNDIGVP-------LTLLRSTPQDDYAVIELGANHIGEIAYTVGLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +++ L      A++  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLSAGN-TAVVNLDSQGGALWQSVLADKS 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  SV       + + +      +    +     D      + G+  V NAL A+ L I
Sbjct: 236 VKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAASALAI 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  +   ++ R
Sbjct: 296 EMGATLADIQHGLAHLSKVKGRVDVTELTDHITLIDDSYNASVPAMKAAVDLLGGFSATR 355

Query: 384 IIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++       ++       +G+ A       ++T       D  K+ +++ HG
Sbjct: 356 WLILGNMAELGEESLALHQQVGEHAAPFQFDYVLT----YGHD-AKVISDVCHG 404


>gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 455

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 176/473 (37%), Gaps = 38/473 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M +  L + +  +++N   +FP +         V  DSR +Q   +F+A+ G K DGH F
Sbjct: 1   MSVNRLTFHEICQILNS-PVFPAEID--SFTPSVVVDSRLLQKNDLFIALPGEKTDGHHF 57

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +   +GA A +VS+ +  Q+ +     + PIL VD+  + L   A     +    I+A
Sbjct: 58  LNEVEKKGAAAAIVSNDFLRQNKTNF---HMPILGVDDVLEALQKLAQEYLKQRQVKIVA 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+ GK++    + Q+ Q+    +F  G          +       P  L+    Y   
Sbjct: 115 ITGSVGKTTTKHLLFQLLQKHFSVAFSPG----------NQNSQIGLP--LSILNHYHGH 162

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + V  + +  ++ G  Q  ++         T L   H+    + +   +AK  +     P
Sbjct: 163 EDVLILEMGMTAQGHIQKLIEIAPPDIAIVTALELVHVAGVHSLENIAHAKREILTH--P 220

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K    +I ++  +   + +          ++  Q  +   ++   +  +    +S     
Sbjct: 221 KTMLGLIPSEIPFYALLHETGTCRKQSFSTLSIQADYCLREQDQHLQIRDSQGLSP---- 276

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P  G+   +N L A   C A+G+  + + + +  L +   R E V    +G    
Sbjct: 277 LLPRLPFLGKHNQHNFLAAISACRALGMTWSDIQQVIPTLTLPERRLEQVI--KKGILFI 334

Query: 360 VD-YAHTSNSLEMILKNIRT--ITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIA 413
            D Y     S++  L  +      SG+ I V G   +     +     +G ++L   D+ 
Sbjct: 335 NDSYNAALTSVKAALDALPPPLQFSGKRIGVIGEMVELGTFSEACHREVGILSLAKLDLM 394

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I   D         I                  + I    + +   DV+++ G
Sbjct: 395 ICYGDG-----CLPIEEVWKKHNKPVHLTLTFEQVIAELKQHVLPGDVVLLKG 442


>gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL S4-171]
          Length = 309

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 123/329 (37%), Gaps = 28/329 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+  + +    L    SI    +R+  I  V  D+R I+ G +FV  VGN  DGH F+
Sbjct: 1   MNLKKTVGEVVAML--DSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A                 ++ P+++V++T   L   A +   +    ++A+
Sbjct: 59  GQAREMGAVATFWQKNVP------NPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAI 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I + S    +  G  +                             
Sbjct: 113 TGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDT------------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  +     +      K      TN+G  HI+Y  ++Q    AK+ +   L P 
Sbjct: 160 EVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNPS 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
                      Y + ++    +   R L+ G   +  I+  ++ A         + E  D
Sbjct: 220 GILIY-----PYEETLLLSQIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PD 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +   P+ GE  V+N + A      IGI+
Sbjct: 274 LEIFVPIIGEHNVFNTMAAMLAAREIGIE 302


>gi|224023460|ref|ZP_03641826.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
 gi|224016682|gb|EEF74694.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
          Length = 461

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 135/375 (36%), Gaps = 26/375 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR+   G +F+A+ G   +G+ F  QA+ +G    VV      Q      + +  
Sbjct: 46  QVTTDSRNCPEGSMFIALKGGNFNGNAFAEQALQKGCRYAVVDEPEYAQ------KDDPR 99

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           IL+V++  K L   A+    +    I+ +TGT+GK++    +  +           G   
Sbjct: 100 ILLVEDCLKALQELANYYRRQLGTRIIGITGTNGKTTTKELIATVL----------GRKY 149

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +     +       P+ L   L       +  V + AS  G        ++   G  TN
Sbjct: 150 NVLYTQGNLNNHIGVPLTL---LRLKPEHEIAVVEMGASHPGEIHMLTHIVEPDYGIITN 206

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +G+ H++   + +     K  L++ L   K S   I  ++ Y  ++ +     G   +  
Sbjct: 207 VGKAHLEGFGSFEGVIRTKGELYDYLRSRKNSSVFIQNENPYLNQIAE-----GLNCIRY 261

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          V             E    +    L G + + N L AA +    G++  
Sbjct: 262 GQTEGLYVSGHVLKCSPFLAFAWIGEKGLHEVQTHLIGTYNLDNVLAAAAIGRFFGVEEE 321

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L        R +   T +    I   Y     S+   L+N R + +   +V+ G 
Sbjct: 322 EISLALSSYIPQNNRSQLEETPNNH-LIVDAYNANPTSMMAALENFRHVEAAHKMVILGD 380

Query: 391 GGDRDQGKRPIMGKI 405
             +     +    KI
Sbjct: 381 MKELGSSSKEEHAKI 395


>gi|160887823|ref|ZP_02068826.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
 gi|156862653|gb|EDO56084.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
          Length = 432

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 142/386 (36%), Gaps = 42/386 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F  +A+  G+   +V         +     +T
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEE------AYAPAGDT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK-------SSVASFVQQICQRSGLS 143
             +VV+N+ K L   A+    +    I+ +TGT+GK       S+V S    +    G  
Sbjct: 68  RYIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  IG   T+                    L       +  V + AS  G  +  ++  +
Sbjct: 128 NNHIGVPLTL--------------------LRLRPEHDLAVVEMGASHPGDIKELVEIAE 167

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHN 262
              G  TN+G+ H++   + +     K  +++ L   KE+   I+ D+ Y K++    H 
Sbjct: 168 PDYGIITNVGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQ 227

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAG 320
                ++ G +        V             + +    +    L GE+   NAL A  
Sbjct: 228 -----IAYGSEDGLYINGHVTGNSPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVT 282

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +    G++   + + L        R +   T      I   Y     S+   + N R + 
Sbjct: 283 IGHFFGVEPEKIDKALAGYTPQNNRSQLKKTADN-TLIIDAYNANPTSMMASISNFRNMQ 341

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +   +++ G   +  +       KIA
Sbjct: 342 AENKMLILGDMRELGKDSADEHQKIA 367


>gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 103P14B1]
 gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis O35E]
 gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 101P30B1]
          Length = 494

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 163/477 (34%), Gaps = 66/477 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V            +
Sbjct: 29  EIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VV 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +   +  
Sbjct: 80  DCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLI 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +            T    +L   L              A+  G   +    ++  
Sbjct: 140 TRGNLNNDLGVPMMLLELTDEHRFLVIEL-------------GANHLGEIAYTASMVRPD 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     +     AK  ++  L  +   AI+   D +  E++K+A     
Sbjct: 187 VALILNIGTAHLGEFGGRANIACAKSEIYSALTSQ-GVAILPFSDDFYPELLKQASQFTK 245

Query: 266 RVLSVGYQG---------------------------KFIHLKKVCAIHNKQQVTISV--- 295
             LS G +                              +    +         T++    
Sbjct: 246 LHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNID 305

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +        P  GE  V NAL AA    A+G+    + + L +     GR   +    
Sbjct: 306 IDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM-- 363

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDL 409
            G  I  D Y     S+    K +      +I+V   +F  G   D     +  ++AL  
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLE 423

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D   +T  N  +     I  E       + +K + ++ +R  +   +    ++  G
Sbjct: 424 IDHV-LTLGNHMAHTAAAI-NEQKSIARHYTDKPSLLKDLRQLLSHGSA--TVLFKG 476


>gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
 gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
          Length = 457

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 178/479 (37%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEVAQVVGAKNDISI-FEDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +     +          N P ++VD+      + A+    K   ++ AV
Sbjct: 56  ETAFENGAVVTLSEKEIA----------NHPYILVDDVLTAFQILAAYYLEKTAVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------KYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  +        T +G  H+ + + +      KM++ + + P
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAP 211

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +S  +  AD      +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 212 -DSLLLAPADP-----IVENYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQNLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P          E  ++ E  ++   E L   D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDKDQFEDLVKQVKESLGANDQILLKG 439


>gi|21910619|ref|NP_664887.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28895693|ref|NP_802043.1| D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
 gi|21904821|gb|AAM79690.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28810942|dbj|BAC63876.1| putative D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
          Length = 455

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 151/431 (35%), Gaps = 54/431 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + +GH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-NGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPDD 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D   L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MD 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                I   D   D Y  E           V+  G       L        K  +T +  
Sbjct: 211 SNGILIAPGDSIIDPYLPE--------NQMVIRFG---DHQELNVTDIREEKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++E LE + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM----GKIALD 408
            I  D Y     ++ +IL+    I     G+ I V     +       +      +++ D
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPD 378

Query: 409 LADIAIVTDDN 419
             D  +   D+
Sbjct: 379 RIDQLVFYGDD 389


>gi|293370650|ref|ZP_06617202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
 gi|292634384|gb|EFF52921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
          Length = 431

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 141/377 (37%), Gaps = 27/377 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F   A+  G    ++  A         +  + 
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEA------EYAVEGDK 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYILVDNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P  L   L       +  + + A+  G  +   +  +   G  T
Sbjct: 126 --------NLNNHIGVPTTL---LRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  K++   I+ D+AY   + +     G  ++S 
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNAYLMNIAQ-----GLNLISY 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G +       ++               +G+       L GE+   NAL A  +    G++
Sbjct: 230 GTEDDLYVNGQITDNSPYLAFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVE 289

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  + E L        R +   T      I   Y     S+   L+N R +T    +++ 
Sbjct: 290 AKKIDEALASYTPQNNRSQLKKTEDN-TLIIDAYNANPTSMMAALQNFRNMTVPHKMLIL 348

Query: 389 GCGGDRDQGKRPIMGKI 405
           G   +          KI
Sbjct: 349 GDMRELGAESPAEHQKI 365


>gi|317474461|ref|ZP_07933735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
 gi|316909142|gb|EFV30822.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 432

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 160/422 (37%), Gaps = 40/422 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   +V  A  +         +T
Sbjct: 14  TGVTTDSRNCPKGSLFIALKGDNFNGNTFAAKALEAGSAYAIVDEAAYVP------AGDT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN+ + L   A+    +    I+ +TGT+GK++    +  +  R           
Sbjct: 68  HYILVDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSR----------K 117

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             I     +       P+ L   L   +   +  V + AS  G  +  ++  +   G  T
Sbjct: 118 YNILYTQGNLNNPIGVPLTL---LRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L  K +S   I+ D+ Y  ++       G   +S
Sbjct: 175 NVGKGHLEGFGSFEGVIRTKGELYDYLRQKGDSTIFIHQDNPYLTKLA-----WGLNPIS 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G Q        V               EG   +    L GE+ + NAL A  +    G+
Sbjct: 230 YGEQDGLYVNGHVTGNSPYLIFEWKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   + + L +      R +   T      I   Y     S+   + N   + +G+ +++
Sbjct: 290 EPEKIDQALNEYEPRNNRSQLKKTADN-TLIIDAYNANPTSMLASISNFHNMQAGQKMLI 348

Query: 388 FGCGGDRDQGKRPIMGKIA-----LDLADIAIVTD-------DNPRSEDPEKIRAEIIHG 435
            G   +  +       KI       D  D+A+V +       + P   D   + AE+   
Sbjct: 349 LGDMRELGKDSPEEHQKIVDYLEKCDFKDVALVGELFAATRHNYPTYPDAPALIAELQKN 408

Query: 436 IP 437
            P
Sbjct: 409 KP 410


>gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
 gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
          Length = 441

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 157/454 (34%), Gaps = 61/454 (13%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
               ++    +DSR ++ G +FVA+ G K DGH F+ +A  +GA  +VV     +++   
Sbjct: 16  GENCEVKRFVTDSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVEREVPVKEGKF 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV+++ K L   A          ++ + G++GK++    V  +    G   
Sbjct: 76  A-------LVVEDSLKALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSAVGKVC 128

Query: 145 F-------QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                   QIG   ++++F +D                           + AS+ G    
Sbjct: 129 KTPKNYNSQIGVPLSVANFPEDCDFWVIE--------------------MGASAKGDVAK 168

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               +       T++G +H++              + E +                  V+
Sbjct: 169 LTQLVIPHVRVITSIGEEHLETFGCLDDVILGNGEILEGMR------------EDHVAVL 216

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                   RV      G+   L         + V   V+GK+     P+P    V N L 
Sbjct: 217 PSYVAHCYRVERAVLFGEGTPLSAQDLKLTVEGVRFVVKGKE--IFLPVPSLALVENILC 274

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           + G+  A+G+D   +L+ L     V GRF  +     G  I  D Y     S++  ++++
Sbjct: 275 SLGVMEALGVDWTTLLDKLTTFRPVEGRFRTLSV--MGATIIDDSYNANPLSVKKAIESL 332

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKIRAEI 432
             +  G  I V G   +  +    +   +    A    D  I      R         E 
Sbjct: 333 SLM-EGHRIAVLGDMLELGEKAEELHRDVGRWCAEKRIDECIFYGYWMRYA-----FHEA 386

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  I   ++ E ++   + L +  +++V G
Sbjct: 387 KRLGVSTIYLEDKGEVVQHLRKKLREGTIILVKG 420


>gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
 gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
          Length = 462

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 100/448 (22%), Positives = 167/448 (37%), Gaps = 45/448 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R ++ G +FV +VG + DGH F+PQA+A GA  ++ +              + 
Sbjct: 26  TGVSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVANGAAGVLAAQPV-----------DA 73

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P ++V++T K L         + P     AVTG+ GK+SV   V+   + +G +   +  
Sbjct: 74  PAVMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTSVTRAVEAGLRLAGKAHASV-- 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKLIAGS 208
                        +  + I +   L+ +       V     +H          ++  A +
Sbjct: 132 ------------KSYNNHIGVPLTLARMPRDTERAVFEIGMNHADEITPLSSFVQPHAVA 179

Query: 209 FTNLGRDHIDYHQTQQA-YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            T +G  HI+     +A    AK  +F  L+P    A++ AD+ +   +   A   G  V
Sbjct: 180 ITTVGPVHIENFPDGEAGVARAKAEIFAGLMP-GGIAVLNADNRWFDYLKGEAEKVGATV 238

Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S G  QG    L        +  V++ + G+   F     G     N+L    +  A+ 
Sbjct: 239 WSFGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVLLMLEALD 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +     L  L     + GR         GG    +   Y     S++  LK +     +G
Sbjct: 299 VPRETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTLGARKVAG 358

Query: 383 RIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           R IVV       G D  +    +   IA    D+  +   + +S   E +      G   
Sbjct: 359 RRIVVLTDMLELGEDSARFHAELAEPIAAANVDMVFLAGVHMKSL-WEALPPTRRGGYAV 417

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             EK     A   AI      DV++V G
Sbjct: 418 VTEKLTAELA--GAI---RPGDVVMVKG 440


>gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC
           27126]
          Length = 431

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 135/374 (36%), Gaps = 26/374 (6%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G +++A+ G   +GH FI  A   GA A++ S           + ++ P+++V++T++ L
Sbjct: 1   GAVYLALKGPNFNGHDFISTAEKAGASAVIASED---------VATSLPVIMVEDTKEAL 51

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            L  + +        +A+TG+SGK++V      I +R G         +T  +F  D  +
Sbjct: 52  GLLGAAVKAYVAPKTIAITGSSGKTTVKEMCAAILERRGN------VLATNGNFNNDIGV 105

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                      L          + + A+  G   +  + +K    +  N    H++   +
Sbjct: 106 P-------LTLLRLEPQHEYAVMELGANHIGEIAYTTNLVKPDVATIVNAAASHLEGFGS 158

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLK 280
                 AK  +F+ L   +  A++  D  +S+    +         S        F    
Sbjct: 159 LLGVARAKSEIFKGL-GSDGVAVVNVDSQFSEFWQGKLKQTKTLTFSPQQKNDADFRAED 217

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +       +     D      +PG   V NALVAA L + +G     V + L  + 
Sbjct: 218 ITIGLDGCAAFHLVCPQGDMSIQLTIPGVHNVGNALVAAALTLQVGASLENVRDGLLAMK 277

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR        +   +   Y     S+   +  + +  SG  ++V G   +  +  R 
Sbjct: 278 QVSGRLNVKQLTEQVRLLDDTYNANVASVNAAIDTLSSF-SGIRVLVLGDMKELGEKARF 336

Query: 401 IMGKIALDLADIAI 414
              ++        I
Sbjct: 337 YHEQVGEYAKQKGI 350


>gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2
           ,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 473

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 160/478 (33%), Gaps = 51/478 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +    +   V  DSR +  G +F A  G + DGH +   
Sbjct: 1   MITLSLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         A      P +VV++    L   A  +  +    ++ +TG
Sbjct: 60  ----------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G  +                     AL+  +    
Sbjct: 110 SAGKTSTKDLIAQLLQRKGPTVWTPGSLNN-------------EIGLPVTALTATAETEH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++  D      G   N+G  H+    +++A   AK  L E +LP++ 
Sbjct: 157 LVLEMGARGIGHIRYLADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVE-VLPEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            A++ ADD   + +  R      RVL  G   +      K       +    +       
Sbjct: 216 CAVLNADDPLVRAMASRTR---ARVLLFGEAPEADVRGEKVRMTADGRPAFELHTPTGCS 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    L GE  V NAL AA +   +G+    + E L +   +      V     G  I  
Sbjct: 273 DVTMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVN 332

Query: 361 D-YAHTSNSLEMILKN------IRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA--LD 408
           D Y     S+   L+        R    GR   V G      D    +   +G++A  L+
Sbjct: 333 DAYNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLN 392

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +  V       E           G      +   +   A+      L   DV++V
Sbjct: 393 VSKLVAVGG----REASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 446


>gi|322392711|ref|ZP_08066171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
 gi|321144703|gb|EFX40104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
          Length = 455

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 160/455 (35%), Gaps = 49/455 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  +N+   DSR I  G +FV + G + DGH FI  A   GA   +     +      
Sbjct: 21  FLDDSLNKAEFDSRLIAEGDLFVPLKGAR-DGHDFIETAFENGAALTLSEKEVASH---- 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P ++VD+        A+    K   ++ AVTG++GK++    +  +   +  + 
Sbjct: 76  ------PYILVDDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLSTNYKTY 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G  +                  L              V      H  D H L  +  
Sbjct: 130 KTQGNYNNEIGLPYTVLHMPDDTEKL--------------VLEMGQDHLGDIHLLSELAH 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      K+++ +  +P+    +  +D      ++      
Sbjct: 176 PKTAIVTLIGEAHLAFFKDRSEIAKGKLQIVDG-MPEGGLLLAPSDS-----IVDSYLPT 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G   +   L+    +  K  +T      +     P+ G++   NA++A+ + +
Sbjct: 230 KQQVVRFGQGAE---LEVTDLVERKDSLTFKTNFLEQALDLPVTGKYNATNAMIASYVAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-- 380
             G+    + +  + L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 287 QEGVPEEQIHQAFQNLELTRNRTEW-KKATNGADILSDVYNANPTAMKLILETFSAIPAN 345

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G+ + V     +       +  ++ L L+   + T      ED  ++        P  
Sbjct: 346 EGGKKLAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIF-YGEDIAELAQLASQMFPIG 404

Query: 438 -----GFIEKGNRIEAI-RTAIEMLNKQDVLVVAG 466
                      ++ EA+ +   E L   D +++ G
Sbjct: 405 HVYYFKKTADEDQFEAMTKQVKESLGAHDQILLKG 439


>gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter cryohalolentis K5]
 gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter cryohalolentis K5]
          Length = 482

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/360 (21%), Positives = 147/360 (40%), Gaps = 27/360 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +++D+R I+ G IF+A+ G+  DGH ++  AIAQGA A +V+   +  D      ++ 
Sbjct: 49  TRIATDTRTIKPGDIFLALTGDNFDGHDYLDTAIAQGAVAAIVARPIATAD-----ANSI 103

Query: 91  PILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P LVV +TR  L   A+    +H    ++A+TG+SGK++    +  I  R   +    G 
Sbjct: 104 PQLVVSDTRLALGQLAAYRRQQHQNLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGN 163

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGS 208
            +                  +   L  LS      +    ++H G   +  + ++     
Sbjct: 164 LNNDLG--------------VPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQPDVAC 209

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++     K  ++   L     AI+   D ++ ++ + A      V+
Sbjct: 210 ILNIGTAHLGEFGSREGICQTKAEIY-HTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVI 268

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G     +    +     + +  + +  +  D   PL GE  V NAL AA    A+ I+
Sbjct: 269 GFG--STDVSASHLDVEPERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNIE 326

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
            + ++  LE      GR           R+  D Y    +S+    K +   T  +++V+
Sbjct: 327 VSDIVVGLENARPAKGRLNSQLLGMH--RLIDDTYNANPHSVRAAAKVLAAQTGTQVMVL 384


>gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 459

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/420 (21%), Positives = 163/420 (38%), Gaps = 43/420 (10%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   L   I   ++   KI  VS DSR I+   +++ IVG K DG +FI + 
Sbjct: 1   MIERSLDQISKMLGGEISDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G+ A ++       +F      N P ++VD+T+K L   A     K    I+A+TG+
Sbjct: 61  QNAGSPAFLIDK-----NFKIPKSINIPYIIVDDTQKALRDLARAYRKKLDIKIIAITGS 115

Query: 124 SGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +GK++  + +  +        +  G  + +IG   TI  F++D                 
Sbjct: 116 NGKTTSKNIIHSVLSEKYKVEKTHGNLNNEIGLPLTILDFSEDT---------------- 159

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +  V +     G      +  +      TN+G  H+   +T++    AK+ + E 
Sbjct: 160 ----DIGVVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGIAKAKLEILEG 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L   +   +   DD   K+V+  +++   + +S G  G  +  K     +       S +
Sbjct: 216 L-KDDGIFLYNGDDEILKKVLP-SYDIKQKTISFGM-GDKVDFKVEAREYTSTSTNFSYK 272

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +++    PL G  QVYN  +A  +     +    +   L K      R E +     G 
Sbjct: 273 DENYSV--PLLGSHQVYNGALAVLIGKLFDLSYDQIKVGLSKSSNNANRNELI--ERDGF 328

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            I  D Y     SL+  L+    +      IVV G   +    +  +  K  LD+    I
Sbjct: 329 DILDDAYKSNPQSLKQGLELAGFLDGYLNKIVVLGDMLELGDDELNLHYKSGLDIDPKKI 388


>gi|298481692|ref|ZP_06999883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
 gi|298272233|gb|EFI13803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
          Length = 431

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 142/377 (37%), Gaps = 27/377 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    I  + 
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIID------EIQYAIEGDQ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYILVDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P  L   L       +  + + A+  G  +   +  +   G  T
Sbjct: 126 --------NLNNHIGVPTTL---LRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  K++   I+ D+ Y   +     + G  ++S 
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNPYLMNI-----SQGLNLISY 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G +       ++               +G+       L GE+   NAL A  +    G++
Sbjct: 230 GTEDDLYVNGRITGNSPYLAFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVE 289

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  + + L +      R +   T +    I   Y     S+   L+N R +T    +++ 
Sbjct: 290 TKKIDKALAEYTPQNNRSQLKKTENN-TLIIDAYNANPTSMMAALQNFRNMTVPHKMLIL 348

Query: 389 GCGGDRDQGKRPIMGKI 405
           G   +          KI
Sbjct: 349 GDMRELGADSPAEHQKI 365


>gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
 gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
          Length = 474

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 152/480 (31%), Gaps = 52/480 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE---VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ +     P    +  +     V  DSR ++ G +F A  G   DGH +   
Sbjct: 1   MIALTLAEIADITGGRPHDIPDPSVRTAGPVVIDSRQVEPGSLFAAFEGEHVDGHDYAG- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       A      P +VV +  K L   A  +  +   +++A+TG
Sbjct: 60  ----------RAVAAGAVAVLAARPVGVPAIVVPDVEKALGALARTVVERLGTDVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ Q    + +  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLQHHAPTVWTPGSLNNEIGLPLTALKATAETRHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             + + A   G   +         G   N+G  HI     ++A   AK  L E L    +
Sbjct: 158 -VLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREAIAQAKGELVEALPSEAE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ-QVTISVEGK 298
              A++ ADD   + +  R      R +  G  +   +   +V      Q   T+     
Sbjct: 217 GGVAVLNADDLLVRAMSARTK---ARTVLFGEAEDADVRATEVRMTPAGQPSFTLHTPTG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+ +  +   L     +      V     G  I
Sbjct: 274 CSDVTLRLYGEHHVSNALAAAAVAHVLGMPAEEIATALSGAGTLSRWRMEVTEREDGVTI 333

Query: 359 YVD-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGGDRDQGKRPIMGKIA----- 406
             D Y     S+   L+ +  +        GR   V G   +           +      
Sbjct: 334 VNDAYNANPESMRAALRALVAMGEAGKADGGRTWAVLGPMAELGDDSLAEHDAVGRLAVR 393

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+++ +  V       E           G      +   +   A+      L   DV++V
Sbjct: 394 LNVSRLVAVGG----REASWLQLGAYNEGSWGEESVLVSDAQAAVDLLRSELRPGDVVLV 449


>gi|29349052|ref|NP_812555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340959|gb|AAO78749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 432

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 159/437 (36%), Gaps = 36/437 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  +A+  G    V+  +         I  +   
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDES------EYAIEGDQRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  + L   A+    +    ++ +TGT+GK++    +  +  +S    + +G    
Sbjct: 70  ILVDDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P  L   L   +   +  + + A+  G  +   +  +   G  TN+
Sbjct: 126 ------NLNNHIGVPSTL---LRLKAEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++ L  KE     I+ D+AY   + +     G  ++  G
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDFLRKKEGSTVFIHHDNAYLMNIAE-----GLNLIPYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +       ++               +GK +     L GE+   NAL A  +    G++ 
Sbjct: 232 TEDDLYVNGRITGNSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVED 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A + E L        R +   T+     I   Y     S+   L+N R +     +++ G
Sbjct: 292 AKINEALAGYTPQNNRSQLKKTDDN-TLIIDAYNANPTSMMAALQNFRNMEVPHKMLILG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
              +          KIA  L + A         E    +  +       F    N  E I
Sbjct: 351 DMRELGAESAAEHQKIADYLKECA--------FEKVWLVGDQFAAAEHSFQTYPNVQEVI 402

Query: 450 RTAIEMLNKQDVLVVAG 466
           +       K   +++ G
Sbjct: 403 KELEADKPKGYTILIKG 419


>gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase
           protein [Xanthomonas albilineans]
          Length = 501

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 151/393 (38%), Gaps = 22/393 (5%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I   +   +   +  I+ +S D+R + AG ++VA+ G + DGH F   A  +GA A++V
Sbjct: 8   MIAHWADADLHGDDVAIDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGASALLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                  +         P +VV +T+  L+  A+ +       + A+TG++GK+SV + +
Sbjct: 68  ERRLPQIEL--------PQIVVADTQLALARIAAGMQRGRATRVAAITGSNGKTSVKALL 119

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I Q +              S   +              ++           + A   G
Sbjct: 120 LAILQYACRLDG--------GSVYANPGNHNNEIGLPLAVIAAPDDADYAIYEMGAGKPG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +  D          N+   H++   +       K  ++  L P +  A+I  DDA+ 
Sbjct: 172 DIAYLTDIAPPRVSLVNNIAPAHLERMGSLLGVAQTKGAIYAAL-PADGTAVINIDDAFG 230

Query: 254 KEVMKRAHNA-GCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               ++   A   RVL  G Q G  +   ++    ++    +     + +   PLPG   
Sbjct: 231 LWFEQQLSAASRPRVLRFGLQHGAHVTATRIRMAADRTHFVLLTPQGEAETTLPLPGRHN 290

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE- 370
           + NAL AA L +A+ +  A +   L ++  VPGR   +     GG + +D ++ +N    
Sbjct: 291 LLNALAAAALALALDVAPARIAAGLAQVQPVPGRQ--ISHTLPGGAVLIDDSYNANPGSL 348

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
               +      G   +V G   +   G   +  
Sbjct: 349 AAAIDALAAIGGERWLVLGDMRELGAGAEALHA 381


>gi|116495994|ref|YP_807728.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei ATCC
           334]
 gi|116106144|gb|ABJ71286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei ATCC 334]
          Length = 462

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 153/419 (36%), Gaps = 50/419 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+   +    +  ++ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKMT------LAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKFLSLFASRLY-G 111
           FIP            ++A +    +     + P+      LVV +  K +   A      
Sbjct: 54  FIP------------AAATAGAVATFVAADHLPVTTKLITLVVPDPLKAMQQLAQYYLLM 101

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++A+TG++GK++       I         Q     T  ++  +  +         
Sbjct: 102 KVNPKVVAITGSNGKTTTKDMTAAILAT------QYHVVKTPDNYNNEIGVPM------- 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS   +  V  + +     G         +      T +G  HI++ +T+    +AKM
Sbjct: 149 TILSMEPNTEVLVLEMGMDRPGQLHALSTLAEPDVAVITMIGEAHIEFFKTRDKIADAKM 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQ 290
            + + L   +   I   D+   +E   RA        + G   +  I    +    N  +
Sbjct: 209 EITDGL-KDDGTFIFNGDEPLLQE---RAKKITQERETFGLHPENTIFAHSISGHRNHTE 264

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+     D  F  P+ GE+ V NAL A  +     +   ++ + L    V   R +++ 
Sbjct: 265 FTVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHVKPEIMQKALAHFQVTANRTQWL- 322

Query: 351 TNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL 407
               G +I  D Y     +++ ++ +    T+ GR I V G   +  +    +   +A 
Sbjct: 323 IGDVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHIAVLGDMLELGEQSPALHAGLAE 381


>gi|160885477|ref|ZP_02066480.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|260172201|ref|ZP_05758613.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. D2]
 gi|315920509|ref|ZP_07916749.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109099|gb|EDO10844.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|313694384|gb|EFS31219.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 431

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 141/377 (37%), Gaps = 27/377 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F   A+  G    ++  A         +  + 
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEA------EYAVEGDK 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYILVDNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P  L   L       +  + + A+  G  +   +  +   G  T
Sbjct: 126 --------NLNNHIGVPTTL---LRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  K++   I+ D+AY   + +     G  ++S 
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNAYLMNIAQ-----GLNLISY 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G +       ++               +G+       L GE+   NAL A  +    G++
Sbjct: 230 GTEDDLYVNGQITDNSPYLAFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVE 289

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  + E L        R +   T      I   Y     S+   L+N R +T    +++ 
Sbjct: 290 AKKIDEALASYTPQNNRSQLKKTEDN-TLIIDAYNANPTSMMAALQNFRNMTVPHKMLIL 348

Query: 389 GCGGDRDQGKRPIMGKI 405
           G   +          KI
Sbjct: 349 GDMRELGAESPAEHQKI 365


>gi|302389517|ref|YP_003825338.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200145|gb|ADL07715.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
          Length = 461

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 158/429 (36%), Gaps = 47/429 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G +   GH     A  +GA+ +VVSSA      ++   I+++ P++   +    LS   +
Sbjct: 50  GARVFIGHD---AANIRGADLVVVSSAIPPTNPEYVEAIKNDIPVIHRAD---MLSTLMA 103

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
              G      +AV+G  GK++  S +  + ++ G+S     PT  I     D        
Sbjct: 104 TRKG------IAVSGAHGKTTTTSMISLVLEKGGMS-----PTVVIGGELNDIGG----- 147

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  +    +G   V+    S G        +       TN+  DH+D+++  ++  
Sbjct: 148 -------NATLGKGEYMVAEADESDGSFLK----LTPYIAVVTNIENDHMDHYKDMESMK 196

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            A  R F   L K+  A++  D+ + ++VMKR  +       + Y   ++  K +     
Sbjct: 197 EA-YRKFIMNLKKDGFALLGTDNEHVRDVMKRV-DVPYFTYGINYPADYM-PKNIHIEGV 253

Query: 288 KQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +  +    +   +    +PG   +YNA  A  +   +G+    +   L+    V  RF
Sbjct: 254 DSRFEVYYRNERLGELELHVPGMHNIYNATAAVAVGHRLGLKMEDIAGALQAFRGVQRRF 313

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           + +G    G R+  DYAH    ++  LK  + +   ++  VF                 A
Sbjct: 314 QLIGEVG-GVRVVDDYAHHPTEIKATLKAAKLLNPNKLYAVFQPHRYTRTKMLAEEFGNA 372

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            + AD  I+T      E P        I   +           ++ +      E +   D
Sbjct: 373 FEDADEVIITRLYSAGEAPIPGVSSMLIVEALKRSGKNVTYIDDKEKIPDYLAERVVPGD 432

Query: 461 VLVVAGKGH 469
            ++  G G 
Sbjct: 433 FVLTIGAGD 441


>gi|289574841|ref|ZP_06455068.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis K85]
 gi|289539272|gb|EFD43850.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis K85]
          Length = 290

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 107/222 (48%), Gaps = 10/222 (4%)

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G       + +      +Q   I   G        LPG + V N LVA  +   +G+   
Sbjct: 59  GPHTGAPRMWRPRTRGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPE 118

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             +  L ++  VPGR E +    +G    VDYAH   +L  +L  +      R+ VVFG 
Sbjct: 119 QAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGA 175

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF------IEKGN 444
           GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G          +E  +
Sbjct: 176 GGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIAD 235

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 236 RRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 276


>gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
 gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
          Length = 471

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 154/458 (33%), Gaps = 56/458 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G  F+ + G + DGH F+  A+ +GA+A  V+      D +  +      
Sbjct: 32  VCTDSRTLEPGSFFIPLRGERFDGHRFLANAVERGAQAAFVAR-----DCAHAVPDGLLH 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V++T       A+    +    ++AVTG++GK++    ++      G           
Sbjct: 87  WRVEDTLLAYQQLATLHRRQLSAAVVAVTGSAGKTTTRELIRSALAPLGDVQAS------ 140

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                  +             L          V +     G  +      +      TN+
Sbjct: 141 -------DSNNNNDIGVPLTLLGAHREHAAVVVEMGMRGAGEIERLSRCAEPQIAVITNI 193

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI    ++ A  +AK  +   L P     +I A DA  ++ + R      R+L V  
Sbjct: 194 GTAHIGRLGSRAAIASAKCEITAALSP-LGIVVIPAGDALLEDALSRCWTG--RILRVAL 250

Query: 273 QGK--------------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            G                +    +      +  +++  G  F    PL G     N ++A
Sbjct: 251 DGDEPENGPEVSGLTSGDLPTPDLVGHFLPEDQSLAFNGLRFHC--PLEGRHNARNFMLA 308

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIR 377
             +   + +    +     ++     R   +G    G  +    Y  +  ++   L+ + 
Sbjct: 309 LAVAQELKVSLQTIQALDVQVPGGRNRRLSLG----GIALLDETYNASPEAVFAALQ-LL 363

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAIVTDDNPRSEDPEKIRAEI 432
               GR   V G   +       +  ++A    D     + +V       E+ E +  E+
Sbjct: 364 AHQPGRRYAVLGTMLELGSRSVDLHRRVAQKAVDLQLDGLVVV----AGGEEGEAM--EV 417

Query: 433 IHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
             G +  F       +A     E L   D +++ A +G
Sbjct: 418 AAGSLSRFERVETPEQAALPLAEWLKPGDTVLLKASRG 455


>gi|322388819|ref|ZP_08062416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
 gi|321140438|gb|EFX35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
          Length = 457

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 158/446 (35%), Gaps = 49/446 (10%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
             DSR I  G +FV + G + DGH FI  A   GA   +     +          + P +
Sbjct: 30  EFDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEQEVA----------DHPYI 78

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +V++        A+    K   ++ AVTG++GK++    +  +   S  +    G  +  
Sbjct: 79  LVEDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLSTSYKTYKTQGNYNNE 138

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNL 212
                           L              V      H  D H L  +        T +
Sbjct: 139 IGLPYTVLHMPEDTEKL--------------VLEMGQDHLGDIHLLSELAHPKTAIVTLV 184

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+ + + +      K+++ +  + K S  +  AD      +++       +V+  G 
Sbjct: 185 GEAHLAFFKDRSEIAKGKLQIADG-MEKGSLLLAPADP-----IVEDYLPTEQKVVRFGP 238

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +   L+       K  +T+     +     P+ G++   NA++A+ + +  G+    +
Sbjct: 239 GAE---LEITELTERKDSLTLKANFLEKSLDLPVTGKYNATNAMIASYVALQEGVTEEQI 295

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVF 388
            +  + L +   R E+    + G  I  D Y     ++++IL+    I     G+ + V 
Sbjct: 296 GQAFQNLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKLAVL 354

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIE 441
               +       +  ++ L L+  A+ T      ED   +        P           
Sbjct: 355 ADMKELGDQSVQLHNQMILSLSSDALDTVIF-YGEDIADLAQLASQMFPIGHVYYFKKTA 413

Query: 442 KGNRIEA-IRTAIEMLNKQDVLVVAG 466
           + ++ EA ++   E L   D +++ G
Sbjct: 414 EEDQFEAMVKQVKESLGAHDQILLKG 439


>gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
 gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
          Length = 451

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 95/421 (22%), Positives = 157/421 (37%), Gaps = 41/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+        EL   L    +   + +I  VS+D+R + AG +FVA+ G + D H F 
Sbjct: 2   MTLR------LAELAQVLDARLI-GDDGEITVVSTDTRTLGAGALFVALRGERFDAHDFC 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  GA A++V     L           P LVV ++ K L      +  +    +LA+
Sbjct: 55  EQAVQAGASALLVERELPLA---------IPQLVVTDSLKGLGRLGKLVRERINPKVLAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V      I +  G      G                         L      
Sbjct: 106 TGSCGKTTVKEMATAILRNEGEVLATAG-------------NFNNEVGVPLTLLRLEPQH 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G         K  A    N+   H++   + +  F+AK  +FE L  +
Sbjct: 153 KFAVMELGANHPGEIAWTTSLAKPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGL-SE 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+ AD+ +  +  +R     C     G    F     V       +  +     + 
Sbjct: 212 GGTAIVNADNEFWPKWRER--GIQCAFSIEGQSQPFHARNLVLNERGCAEFVMVTPQGEL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V NAL AA  C+A+G     V   LE++  V GRF        GG   V
Sbjct: 270 SLTLAIPGRHNVANALAAAAGCLALGASLGSVKAGLEQMAPVKGRFC---VQRWGGLTLV 326

Query: 361 DYAHTS--NSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIV 415
           D  + +   S+   +  +  +  G  ++VFG      +    +   +G+ A +    A++
Sbjct: 327 DDTYNASVESVLAGIDALTAM-GGFKVLVFGDMRELGEESAEQHARVGRHARERGLDAVL 385

Query: 416 T 416
           T
Sbjct: 386 T 386


>gi|150025456|ref|YP_001296282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149771997|emb|CAL43473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 427

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 128/375 (34%), Gaps = 30/375 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+D+R I+   +F+A+ G+  D + F  +AI++GA  +++       +         
Sbjct: 14  TSVSTDTRKIENNSLFIALKGDNFDANTFAEEAISKGALFVIIDDKKHHTNKDKM----- 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V ++ + L   A     +    I+A+TG++GK++    +  +  +   +   IG  
Sbjct: 69  --ILVLDSLQTLQELAKYHRQQLGLPIIALTGSNGKTTTKELINVVLSKKYNAKATIG-- 124

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   LS+     +  V + A+     +      +   G  T
Sbjct: 125 --------NLNNHIGVPLTL---LSFDEDTDIGIVEMGANHQKEIELLCSIAEPNFGYIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++          AK  L+  L   +  A +  DD      ++          S 
Sbjct: 174 NFGKAHLEGFGGIDGVIKAKSELYNYLEENKQTAFVNLDDE-----IQNQKTMQIMRYSF 228

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +      V          + +  K       L G +   N   A  +     I   
Sbjct: 229 SIAKE----SDVKIDFVVANPMVEINYKKMKIKSHLIGLYNANNISAAIAIGKYFNIADD 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + ++       R + +  NS    I   Y    +S+E  + N   + +   I + G 
Sbjct: 285 DIKDAIQNYIPTNNRSQLIEKNSNNI-ILDAYNANPSSMEAAITNFIQLKAKDKIAILGD 343

Query: 391 GGDRDQGKRPIMGKI 405
             +          KI
Sbjct: 344 MFELGNDSLIEHKKI 358


>gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 457

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/455 (17%), Positives = 161/455 (35%), Gaps = 49/455 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + ++ +   DSR I+ G +FV + G + DGH FI  A   GA   +     +      
Sbjct: 21  FADVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHDFIETAFENGAVVTLSEKEVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P ++VD+        A+    K   ++ AVTG++GK++    +  +   +  + 
Sbjct: 74  ----NHPYILVDDVLSAFQTLAAYYLEKSAVDVFAVTGSNGKTTTKDMLAHLLSTTYKTY 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G  +                  L              V      H  D H L  +  
Sbjct: 130 KTQGNYNNEIGLPYTVLHKPDDTEKL--------------VLEMGQDHLGDIHLLSKLAH 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      KM++ + + P     ++   D     +++     
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAP--GSLLLAPADP----IVEDYLPT 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G   +   L+    I  K  +T      +     P+ G++   NA++AA + +
Sbjct: 230 DKKVVRFGQGAE---LEVTDLIERKDSLTFKANFLEQALDLPVTGKYNATNAMIAAYVAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-- 380
             G+    + +  + L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 287 QEGVSEEQIHQAFQNLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPAN 345

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G+ I V     +       +  ++ L L+   + T      ED  ++        P  
Sbjct: 346 EGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLNTVIF-YGEDIAELSQLASQMFPIG 404

Query: 438 ------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    ++    + ++   E L   D +++ G
Sbjct: 405 HVFYFKKTADEDQFEDLVKQVKESLGANDQILLKG 439


>gi|237719731|ref|ZP_04550212.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299147335|ref|ZP_07040400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
 gi|229451000|gb|EEO56791.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298514613|gb|EFI38497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
          Length = 431

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 142/377 (37%), Gaps = 27/377 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    +  + 
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIID------EIQYAVEGDQ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYILVDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P  L   L       +  + + A+  G  +   +  +   G  T
Sbjct: 126 --------NLNNHIGVPTTL---LRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  K++   I+ D+ Y   +     + G  ++S 
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNPYLMNI-----SQGLNLISY 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G +       ++               +G+       L GE+   NAL A  +    G++
Sbjct: 230 GTEDDLYVNGRITGNSPYLAFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVE 289

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  + + L +      R +   T +    I   Y     S+   L+N R +T    +++ 
Sbjct: 290 TKKIDKALAEYTPQNNRSQLKKTENN-TLIIDAYNANPTSMMAALQNFRNMTVPHKMLIL 348

Query: 389 GCGGDRDQGKRPIMGKI 405
           G   +          KI
Sbjct: 349 GDMRELGADSPAEHQKI 365


>gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
 gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
          Length = 482

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 143/405 (35%), Gaps = 27/405 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 +R    V+ DSR ++   IFVA  G + DG+ F  +AI  GA A+V++     +
Sbjct: 17  LAAGDPDRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVVMTRDPEDE 76

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
             +        +L  D+  +FL   A     +    ++ VTG+ GK++    +     + 
Sbjct: 77  VVAMARDRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDVLAACLSKR 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                  G  + +                L              + +  +  G       
Sbjct: 137 YRVHATAGNYNNLIGLPLTILSAPADTQML-------------VLEMGMNDFGEISRLTA 183

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYS 253
             +   G  T +G  HI    +++    AK  + E + P         S  +++ +D ++
Sbjct: 184 CAQPTFGIITKVGTSHIGMLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDFT 243

Query: 254 KEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGE 309
             +++R A  AG  V+  G             +    +    +   +G  F     +PG 
Sbjct: 244 PYIIERYARPAGIDVVLAGTSTDDDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPGA 303

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AA +   +G+ +  + E    L +   R + V   + G R+  D Y  +  S
Sbjct: 304 QSVPNALFAAAVAHRLGVPAFEIDEAFASLEMTGRRAQ-VRHAACGARVIDDSYNASPES 362

Query: 369 LEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +   L  + ++  SG  I V G  G+       +        A  
Sbjct: 363 MAAGLDLLGSLPCSGTRIAVLGEMGEMGDEAPRLHALTGAYAAAK 407


>gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 462

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 84/403 (20%), Positives = 150/403 (37%), Gaps = 31/403 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  IN +S  S  I+   IF+A++GN+ DGH F+ QA+  GA+A++V+   SL     
Sbjct: 19  GSDVMINTISIHSDLIEEQCIFIALIGNRYDGHDFVEQAVMAGAKALLVNRYVSL----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P L+V +TR  L   A  +  +    I+A+TG+SGK+SV      I +  G   
Sbjct: 74  ----DIPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKTSVKEMTASILKECG--- 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                  T+ +  ++        I L   L          V + ++  G  +   + +  
Sbjct: 127 -------TVIATQKNYNNFIGVSITL---LKLTYGIDFAVVELGSNKLGELKKLGEIVGA 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAH 261
                 N+   H+    +       K ++F  +    + A+I  D         ++    
Sbjct: 177 DVALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVINLDSYSFVQGNSILLNFK 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 L     G       V    +  + T+           P+ G   + N L A+ L
Sbjct: 237 KKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPIFMPILGIHNISNILAASAL 296

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
             A+G   + ++  L+K++ +PGR      N     +  D Y     S+   +  +  + 
Sbjct: 297 SFAVGASLSNIVHGLQKMNALPGRLFPFILNRGKLCLIDDTYNANIGSMIAAINVLSFMP 356

Query: 381 SGRIIVVFGCGGDRD----QGKRPIMGK-IALDLADIAIVTDD 418
             RI+VV       D    +     +G+ I     D  I   D
Sbjct: 357 GYRILVVSDMLELGDLKMARYYHCYIGRLILGSNIDYIITIGD 399


>gi|294791082|ref|ZP_06756240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
 gi|294458979|gb|EFG27332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
          Length = 524

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/492 (17%), Positives = 159/492 (32%), Gaps = 80/492 (16%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V +DSR +  G +FVAI G + DGH ++ QA   GA A +V              
Sbjct: 35  TKITSVVTDSRQVSEGSLFVAIKGERVDGHDYVNQAARAGACAALVEHPVEGAVL----- 89

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVASFVQQICQ 138
              P LVV +T   L   A     +  +          ++ +TG+ GK++    V+ + Q
Sbjct: 90  ---PQLVVTDTIGSLGRLARYNISRRRQIALAEGKDFTVVGITGSVGKTTTKDLVKDLLQ 146

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G +   +G  +              +  Y                 + AS+ G   + 
Sbjct: 147 TAGTTIAPVGSFNNEIGLPLTAVKVDETTRYFVAE-------------MGASAAGEIAYL 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +         +G  H+    +      AK  L + L  +   A++ A D   + +  
Sbjct: 194 TRLVPPDIAVELKVGAAHLGGFGSVDGIRQAKSELVQALTSQ-GIAVLNAQDPNIRLMTG 252

Query: 259 RAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQ------VTISVEGKD-FDFLFP 305
             H +     S G        G       + A   +Q        T+ +           
Sbjct: 253 STHASTLVWFSDGRIDPQNLPGDSRKQIFIYATDTRQDQEDHPSFTLHLPDLPGIPVTLG 312

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVD 361
           L G   V NAL A  +   +G+    +   L     +      V     T      +  D
Sbjct: 313 LSGVHNVMNALAAVSVAYCLGVRPQTIASVLFNHKAMSPHRMAVSLVTLTAGESFTLIDD 372

Query: 362 -YAHTSNSLEMILKN---IRTITSGR---IIVVFGCGGD---RDQGKRPIMGKIALDLAD 411
            +    +S++  L      ++  SG     I V G   +   R++     +G  A   AD
Sbjct: 373 SFNANPDSMKAGLDALSGWKSAESGNEPVKIAVLGSMLELGPREEDLHHSLGAYAAQSAD 432

Query: 412 IAIV----TDDNPRSEDPEKIRAEIIHGIP-----------GFIEKGNRIEAIRTAIEML 456
             +     TDD+      + + + +  G                E+ +  +A     ++ 
Sbjct: 433 YVVTVGSETDDH-----LDTLASALCQGACQRAEQSPVRLLKAYEEHSAGQAATRVAQLA 487

Query: 457 N--KQDVLVVAG 466
                 V+++ G
Sbjct: 488 RQNPGSVVLLKG 499


>gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 12P80B1]
          Length = 494

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 85/425 (20%), Positives = 144/425 (33%), Gaps = 62/425 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V            +
Sbjct: 29  EIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VV 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +   +  
Sbjct: 80  DCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLI 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +            T    +L   L              A+  G   +    ++  
Sbjct: 140 TRGNLNNDLGVPMMLLELTDEHRFLVIEL-------------GANHLGEIAYTASMVRPD 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     +     AK  ++  L  +   AI+   D +  E++K+A     
Sbjct: 187 VALILNIGTAHLGEFGGRANIACAKSEIYSALTSQ-GVAILPFSDDFYPELLKQASQFTK 245

Query: 266 RVLSVGYQG---------------------------KFIHLKKVCAIHNKQQVTISV--- 295
             LS G +                              +    +         T++    
Sbjct: 246 LHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNID 305

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +        P  GE  V NAL AA    A+G+    + + L +     GR   +    
Sbjct: 306 IDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRAMPPKGRLMRLSM-- 363

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDL 409
            G  I  D Y     S+    K +      +I+V   +F  G   D     +  ++AL  
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLE 423

Query: 410 ADIAI 414
            D   
Sbjct: 424 IDHVF 428


>gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 7169]
 gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC1]
          Length = 494

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 163/477 (34%), Gaps = 66/477 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V            +
Sbjct: 29  EIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VV 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +   +  
Sbjct: 80  DCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLI 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +            T    +L   L              A+  G   +    ++  
Sbjct: 140 TRGNLNNDLGVPMMLLELTDEHRFLVIEL-------------GANHLGEIAYTASMVRPD 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     +     AK  ++  L  +   AI+   D +  E++K+A     
Sbjct: 187 VALILNIGTAHLGEFGGRANIACAKSEIYSALTSQ-GVAILPFSDDFYPELLKQASQFTK 245

Query: 266 RVLSVGYQG---------------------------KFIHLKKVCAIHNKQQVTISV--- 295
             LS G +                              +    +         T++    
Sbjct: 246 LHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNID 305

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +        P  GE  V NAL AA    A+G+    + + L +     GR   +    
Sbjct: 306 IDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM-- 363

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDL 409
            G  I  D Y     S+    K +      +I+V   +F  G   D     +  ++AL  
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLE 423

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D   +T  N  +     I  E       + +K + ++ +R  +   +    ++  G
Sbjct: 424 IDHV-LTLGNHMAHTATAI-NEQKSIARHYTDKPSLLKDLRQLLSHGSA--TVLFKG 476


>gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
 gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
          Length = 448

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 92/463 (19%), Positives = 169/463 (36%), Gaps = 69/463 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK   +++    E+    S+        +I  V  DSR +Q G +F AI     +G+ +I
Sbjct: 21  MK---ILFNILDEIFGIKSVVETN----EIGHVVMDSRKVQKGDLFFAI----NNGNNYI 69

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              + +GA  +V  +            ++  ++ V+NT + +   A +        I+A+
Sbjct: 70  EDVLNKGAALVVADNYKG---------NDKRVIKVENTVESMQKLAQKYREALDIKIIAI 120

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++    +  +        +  G  +  IG   TI                    
Sbjct: 121 TGSNGKTTTKDMMYSVLSQKYVTAKTMGNLNNHIGVPFTI-------------------- 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L   S   V  + +  S  G      +  K   G  TN+G  H+++ +T++  F AK  L
Sbjct: 161 LQLDSKYEVAVLELGMSGFGEIDLLSNIAKPDIGVITNIGDSHLEFLKTRENVFKAKTEL 220

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + +  +    II+ DD + K +           + VGY     +  K     +K    +
Sbjct: 221 IKYITKEN--LIIFGDDPFLKIL---------DGIKVGYGDNNNYQIKNFMDSDKG---L 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S E  +  +   L G+    NA +A  +   +GI    +   L+ L + P RF+ +    
Sbjct: 267 SFELDENKYEVALNGKHNCLNAAMAVVIGKKMGIPYEEIKAGLKNLELTPMRFQKI-EKE 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALD---- 408
               I   Y  +  S+   L+    + +  + IVV G   +  + +      I       
Sbjct: 326 NIVYINDAYNASPISVSFSLETFDKLYNDTLKIVVLGDMLELGENEIEYHKNILDKALNI 385

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
             D   +  +  R     +   E    I  F EK    +AI  
Sbjct: 386 HTDKIYLYGE--RMRKALEYIKENREKITHFTEKEEIKKAILK 426


>gi|291615178|ref|YP_003525335.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585290|gb|ADE12948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 480

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 87/399 (21%), Positives = 150/399 (37%), Gaps = 18/399 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             + +N L    M   + + + VS+D+R IQ G +F+A+ G   DG  F+ QA      A
Sbjct: 4   LSQAVNALHAR-MDGADVRFSAVSTDTRTIQQGDLFIALKGENFDGARFVAQAA----MA 58

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
             V++  +      T  S  P+L V++TR  L   A+    +    ++A+TG++GK++V 
Sbjct: 59  GAVAAVVNRDAGLRTQDSGVPLLFVEDTRLALGELAAYWRAQFDIPLVAITGSNGKTTVK 118

Query: 131 SFVQQICQRSGLSSFQ---------IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
             +  I ++                +G       F    +    + I +   L  L +  
Sbjct: 119 EMLSAILRQKIKDDSYDRSLAPRERVGECDDADRFVLATKGNFNNDIGMPLTLLRLRANH 178

Query: 182 VTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              V     +H  +   L  I         N    H+    T +    AK  +F  L   
Sbjct: 179 RYAVIEMGMNHPNEIDYLTRIACPDVALVNNATGAHLQGLGTVEGVARAKGEIFAGL-KD 237

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I ADDA++      A     RVL    +       K        ++ +     + 
Sbjct: 238 DGTAVINADDAHAALWRSLAGKH--RVLDFSLEHPANIQGKWVVQGYGGELLVRTPAGEM 295

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             +  +PGE    NAL AA   +A+ I SA ++  L+    V GR +     +    I  
Sbjct: 296 RIVLQVPGEHNARNALAAATAALALQIPSATIVTGLQGFGGVAGRLQRKQAKNGATLIDD 355

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            Y     S+   L+ +      RI V+   G   +   +
Sbjct: 356 TYNANPASMHAALEVLAQAKGKRIFVLGDMGELGEDAAQ 394


>gi|310287126|ref|YP_003938384.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
 gi|309251062|gb|ADO52810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
          Length = 543

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 104/520 (20%), Positives = 192/520 (36%), Gaps = 48/520 (9%)

Query: 8   YKDFPELINQ----LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +    E+I      L    ++  +   + ++ D+R ++ G + +   G +     ++   
Sbjct: 39  HGLLREIIRADRWTLDAHDIEGADTAFSAITYDTRDVREGTL-LCCKG-RFK-AEYLHDI 95

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G  A V  + +S +       +  P L+V++ RK +SL ++  YG+ P++ L V G 
Sbjct: 96  DERGLAAYVADTDFSAE-------TGAPGLIVNDARKAMSLLSAEFYGR-PQDELTVVGI 147

Query: 124 SGKSSV---ASFVQQICQRSGLSSFQIGP---TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +G       A F Q +          +              ++ LTTP  +   + +   
Sbjct: 148 TGTKGKTTTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREA 207

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
           +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K ++  
Sbjct: 208 ADNGMKYLVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVR 267

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIH---NK 288
                    ++ A   ++  + + A +AG  V +     G          V A       
Sbjct: 268 N----SHALVLGAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEH 323

Query: 289 QQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--R 345
               I+ +G D  +F   L G+F   NA  A  +  A GID          +  V    R
Sbjct: 324 SAYRIAADGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGR 383

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402
            E            VDYAH   S+  +L  +         RI +V G  G++   +R  +
Sbjct: 384 MEQFHDPQSNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEI 443

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI----E 454
            + A    D  I T ++  +E    I  E+   I           +R  A+  AI     
Sbjct: 444 VEAAQHRIDSFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARA 503

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             ++ +++++ GKG E      N       D  I+  +  
Sbjct: 504 HADRFNIILIIGKGDERWIKEHNKHVPFEGDDRIVERMFA 543


>gi|218131936|ref|ZP_03460740.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
 gi|217985812|gb|EEC52152.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
          Length = 432

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 148/387 (38%), Gaps = 30/387 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   +V  A  +         +T
Sbjct: 14  TGVTTDSRNCPKGSLFIALKGDNFNGNAFAAKALEAGSAYAIVDEADYVP------AGDT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN+ + L   A+    +    I+ +TGT+GK++    +  +  R           
Sbjct: 68  HYILVDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSR----------K 117

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             I     +       P+ L   L   +   +  V + AS  G  +  ++  +   G  T
Sbjct: 118 YNILYTQGNLNNPIGVPLTL---LRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L  K +S   I+ D+ Y  ++       G   +S
Sbjct: 175 NVGKGHLEGFGSFEGVIRTKGELYDYLRQKGDSTIFIHQDNPYLTKLA-----WGLNPIS 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G Q        V               EG   +    L GE+ + NAL A  +    G+
Sbjct: 230 YGEQDGLYVNGHVTGNSPYLIFEWKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   + + L +      R +   T      I   Y     S+   + N   + +G+ +++
Sbjct: 290 EPEKIDQALNEYEPRNNRSQLKKTADN-TLIIDAYNANPTSMLASISNFHNMQAGQKMLI 348

Query: 388 FGCGGDRDQGKRPIMGKIA--LDLADI 412
            G   +  +       KI   L+  D 
Sbjct: 349 LGDMRELGKDSPEEHQKIVDYLEKCDF 375


>gi|169334709|ref|ZP_02861902.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257447|gb|EDS71413.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM
           17244]
          Length = 408

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 163/385 (42%), Gaps = 20/385 (5%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFA----QDNRLTTPSPIY 169
            ++ VTGT GKS+ + F++ I      S  ++  G  STI ++      ++ LTTP  + 
Sbjct: 11  KLIGVTGTKGKSTTSFFIKNILDLYLKSKGKMSSGIISTIDTYDGSELSESLLTTPESLE 70

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYF 227
             K L+   +  + +   E SS      R+ G     G F N+G DHI    H+    YF
Sbjct: 71  FYKLLNNAVNNELEYFVCEISSIAYKYSRVYGANFNVGVFLNIGYDHISDVEHKDFDDYF 130

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIH-LKKVCAI 285
           ++K++L E         +I  D     E+ +  +N    ++ +     K  +    +   
Sbjct: 131 SSKIKLLEN----SEYIVINKDLLRYDEINEVLNNKEKDKIFTFSIDDKADYKAMNIKRK 186

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +      +   G+  ++   + G + V NA+ A  +C  + ID   + + +     V GR
Sbjct: 187 NRFTSFDLVHNGELKNYNLLMSGLYNVENAIAAIIVCEILCIDYKYIFKGILG-SAVKGR 245

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E   T      + VDYAH   SL+   + ++      + I + G  G +   +R  +G 
Sbjct: 246 GEIYKTKDGKKTLIVDYAHNELSLKRYFEFVKDEFKGKKHICIIGAPGGKALNRRKEIGT 305

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDV 461
           +     D  I+T D+P  E  + I +EI+  IP +       NR EAI+ A+     ++ 
Sbjct: 306 LCYKNCDEIILTSDDPFYESFDNICSEIMSFIPKYKKIRVIENRTEAIKEAVNSYKNEET 365

Query: 462 LV-VAGKGHETVHIVTNGEKKMSVD 485
           ++ + GKG ET        +    D
Sbjct: 366 IISILGKGSETSQNYNGISRDYISD 390


>gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Riemerella anatipestifer RA-YM]
 gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 424

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 141/388 (36%), Gaps = 35/388 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N+VS DSR I  G +F A  G   +       AI +GA A++V      ++ S  I    
Sbjct: 14  NKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVEQK-EYENISKNI---- 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
               V +T KFL   +     K    I+A+TG++GK++    +  +  +     F  G  
Sbjct: 69  --FYVPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKG-- 124

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   LS      +  V + A+     +      +   G  T
Sbjct: 125 --------NLNNHIGVPLTL---LSIKPEHEIAVVEMGANHQKEIERLCQIAQPDYGYVT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L++ L  +    ++ A+D     +         +++  
Sbjct: 174 NFGKAHLEGFGGVEGVIKGKSELYDYLKKENKQILVNAND----TIQVEKTKDYSKIICF 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G        +     ++ Q+V +  EG++   +  L G +   N   A  L +  GID  
Sbjct: 230 GTLQSDYDFQ---LFYDNQRVGLIFEGEEM--ISQLTGAYNFTNISAAVTLGLHFGIDKN 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           L+ E +++      R + +        +   Y    +S+ + L+N   + +G   V+ G 
Sbjct: 285 LIKEAIQEYTPTNMRSQ-IMQKGDKTLVLDTYNANPSSMAVSLENF-ALFNGCKTVIIGD 342

Query: 391 GGDRDQGKRPIMGKIALD----LADIAI 414
             +     +     I         D  I
Sbjct: 343 MLELGDASKEEHKTILQKAQSLNFDKII 370


>gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
 gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
          Length = 426

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/485 (18%), Positives = 195/485 (40%), Gaps = 67/485 (13%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L  L+ + F   +++L          +I +V  DSR I+   +F AI     +G+ +
Sbjct: 1   MKILTKLLKEKFK--LDKLD---------EILKVVMDSRKIEKDSLFFAI----NNGNKY 45

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I + + +GA  ++        D+S     ++ ++VV++T K +   A          ++A
Sbjct: 46  IDEVLERGATLVIAD------DYSG---DDSRVIVVEDTIKAMQDLAQEYRKALGVKVIA 96

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    +  +  +      +     T  ++                 L    +
Sbjct: 97  ITGSNGKTTTKDMIYSVLSQ------KYRCKKTEGNYNNHIG-------LPFTILQLDDT 143

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V+ + +  S  G      +  K      TN+G  H+++ +T++  F AK  + + ++ 
Sbjct: 144 DEVSVLEMGMSGFGEIDRLCEIAKPDYALITNIGDSHLEFLKTRENVFKAKGEIIKYVVS 203

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    II+ DD Y K +           ++VGY+ K    +        + +  S+EG +
Sbjct: 204 EN--LIIFGDDYYLKNLSG---------ITVGYE-KNCKKRIENFKDTDEGIEFSLEGNN 251

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +     L G+    N  +A  + +++ + S  + +  + L++ P RF+ +    +G  +Y
Sbjct: 252 Y--KINLNGKHNCINGAMAVVVGMSLDLTSEEIQKGFDNLNLTPMRFQKIV---KGETLY 306

Query: 360 VDYAHT--SNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           ++ A+     S+   L+   +       I V G   +    +     +I     DI +  
Sbjct: 307 INDAYNASPISMRYSLETFDKLYNDRTKIAVLGDMLELGDKEIEFHREIIKKALDIKVD- 365

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNR---IEAIRTAIEMLNKQDVLVVAG-KGHETV 472
                 E  +K   E++      I   ++    E+I+ +I+       +++ G +G +  
Sbjct: 366 RIYIYGERMQK-AYELMKQNKKIITSLDKNFIRESIKESIKGSKA---ILLKGSRGMKME 421

Query: 473 HIVTN 477
            I+  
Sbjct: 422 EIIEG 426


>gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 426

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 146/392 (37%), Gaps = 41/392 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             K   V +D+R    G +F+A+VG+  D H +I QA   GA AI+ +          ++
Sbjct: 20  NVKFKGVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQMGAVAIIANK---------SV 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            S  PILVV++T+  LS  AS         ++A+TG++GK++  + +  I      +   
Sbjct: 71  DSQLPILVVNDTQTALSTIASWHLQNIKPIVIAITGSNGKTTTKNMLANILSLQAPTLKT 130

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G          +       P+ L   L+         + + A+  G   H    +    
Sbjct: 131 QG----------NLNNHLGVPMTL---LTLEKQHQYAVIEMGANHLGEISHLRKIVNPDI 177

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN    HI           AK  ++     K S  II     ++ +V   +      
Sbjct: 178 AIVTNTLDAHIGTFGGFDNLVKAKGEIYS----KNSKNIINTQSIFTGDV---SFTPHGN 230

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
               G  G       V       +  +++  +       L G   + NAL A+     +G
Sbjct: 231 TKVSGNNGDIFASNIVN-----NKFDLNIHQQKISITLNLIGIHNIDNALAASACVYPLG 285

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           ID  L+ + LE     PGR E + T     RI  D Y     S  + LK ++   SG  I
Sbjct: 286 IDINLIKQGLEATKAEPGRLEIIHTKQ--FRIIDDTYNANPYSTIIALKTLQNF-SGEKI 342

Query: 386 VVFGCGGD---RDQGKRPIMGKIALDLADIAI 414
           +V G   +     +     +G++A   AD   
Sbjct: 343 IVLGTMEELGNYSKMFHFKIGQLAKKSADTFY 374


>gi|209559647|ref|YP_002286119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540848|gb|ACI61424.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
          Length = 463

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 90/482 (18%), Positives = 175/482 (36%), Gaps = 59/482 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKTFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPDD 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D   L  I +      T +G  H++Y  ++      KM++ +  + 
Sbjct: 152 TEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDG-MN 210

Query: 240 KESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +   I   D   D Y  E           V+  G Q +   +       +K  +T +  
Sbjct: 211 SDGILIAPGDPIIDPYLPE--------NQMVIRFGNQQE---IDVTGIQEDKDSLTFTTN 259

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    + G 
Sbjct: 260 VLATPVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEW-KKAANGA 318

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD---- 408
            I  D Y     ++ +IL+    I     G+ I V     +  +    +  ++       
Sbjct: 319 DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSG 378

Query: 409 LADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
             D  +   D+         +   AE +H      E+ ++ EA+   ++ +LN  D +++
Sbjct: 379 NIDQLVFYGDHIKELARLASQVYPAEQVHYFLKA-EQEDQFEAMAQYVQNILNPFDQILL 437

Query: 465 AG 466
            G
Sbjct: 438 KG 439


>gi|168486962|ref|ZP_02711470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570099|gb|EDT90627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 457

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 173/481 (35%), Gaps = 57/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   + +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKLT------IHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G                 + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + +      T +G  H+ + + +      KM++ + +
Sbjct: 150 EGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++   D     +++       +V+  G   +   L+    +  K  +T     
Sbjct: 210 --ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANF 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  
Sbjct: 261 LEQALYLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   
Sbjct: 320 ILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDV 379

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           + T      ED  ++        P          E  ++ E  ++   E L+  D +++ 
Sbjct: 380 LDTVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLK 438

Query: 466 G 466
           G
Sbjct: 439 G 439


>gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
 gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
          Length = 485

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 148/368 (40%), Gaps = 31/368 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +++D+R I+ G IF+A+ G+  DGH +I  A++QGA A +VS           I ++ 
Sbjct: 56  TRIATDTRTIKTGDIFLALSGDNFDGHDYIDMAVSQGAIAAIVSRP---------ISTDI 106

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P LVV++TR  L   AS    +H +  ++A+TG+SGK++    +  I  R   +    G 
Sbjct: 107 PQLVVNDTRLALGQLASYRRQQHKDLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGN 166

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGS 208
            +                  +   L  LS      +    ++H G   +  + ++     
Sbjct: 167 LNNDLG--------------VPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQPDVAC 212

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++     K  ++   L     AI+   D ++ ++ + A      V+
Sbjct: 213 ILNIGTAHLGEFGSREGICQTKAEIY-HTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVI 271

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G     +    +     + +  + +  +  D   PL GE  V NAL AA    A+ ID
Sbjct: 272 GFG--NTDVSASHLDVEPERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNID 329

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
              ++  LE      GR           R+  D Y    +S+    K +   T  +++V+
Sbjct: 330 INDIVVGLENARPAKGRLNSQLLGMH--RLIDDTYNANPHSVRAAAKVLAAQTGTQVMVL 387

Query: 388 FGCGGDRD 395
                  D
Sbjct: 388 GDIAELGD 395


>gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
 gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
          Length = 498

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 133/389 (34%), Gaps = 28/389 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +F AI G   DGH ++  A+ +GA A VV  A++     +  R   
Sbjct: 48  TGVSIDTRTLCPGDLFFAISGFNSDGHDYVAAALEKGALAAVVDEAHA----ESLARLGP 103

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +V D+    L         +    I AVTG+ GK+S    ++     +G +   +   
Sbjct: 104 LYVVRDDVLAALERLGVAARARTRARIAAVTGSVGKTSTKEALRLALSAAGRTHASV--- 160

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ +  Q       +  +  G        ++      
Sbjct: 161 -----------ASYNNHWGVPLTLARMPRQTEFGVFEIGMNHQGEITPLTRMVRPHVAII 209

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           T +   H++     +A  +AK  +F  L P    AI+ AD+   + +   A  +    V 
Sbjct: 210 TTVAPVHMENFTGVEAIADAKAEIFAGLEP-GGVAILPADNPQFERLAAAAKRSAAGLVT 268

Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S G  +     L  V    +   V   + G+   +    PG     N+L       A+G+
Sbjct: 269 SFGADKHAEARLLDVRLAADHSMVEADICGQLLTYRLGAPGRHLAMNSLAVLLAAKALGV 328

Query: 328 DSALVLEHLEKL---HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIRTITS 381
           D     + L           R E    +     I   Y     S+         +   + 
Sbjct: 329 DPREAAQTLASFAAQPGRGQRLELQAPDGAFTLIDESYNANPASMRAAFDLAGALAPPSP 388

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           GR + V G   +       +   +A DLA
Sbjct: 389 GRRVAVLGDMLELGSHAADMHAGLAQDLA 417


>gi|329964640|ref|ZP_08301694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
 gi|328525040|gb|EGF52092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
          Length = 433

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 143/386 (37%), Gaps = 43/386 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   VV  A            + 
Sbjct: 14  TCVTTDSRNCPEGSLFIALKGDNFNGNAFASKALENGSAYAVVDEAG------YAPTGDA 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGLS 143
             ++VDN  + L   A+    +    I+ +TGT+GK++    +         +   +G  
Sbjct: 68  HYIIVDNCLRTLQQLANFHRRQLGTRIIGITGTNGKTTTKELMSAVLSQSYHVLYTAGNL 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  IG   T+                    L   +   +  V + AS  G  +  ++  +
Sbjct: 128 NNSIGVPLTL--------------------LRLTTEHDLAVVEMGASHPGDIKELVEIAE 167

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAH 261
              G  TN+G+ H++   + +     K  L++ L    + S   I+ D+ Y +E+     
Sbjct: 168 PDYGIITNVGKAHLEGFGSFEGVIKTKGELYDYLRRRKEGSTIFIHYDNPYLREIA---- 223

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAA 319
             G   ++ G + +     +V               EGK       L GE+   NAL A 
Sbjct: 224 -YGLNQITYGSEEELYVSGRVTGNSPYLTFEWKAGKEGKTHQVQTQLIGEYNFPNALAAV 282

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +    G++ A + + L +      R +   T      I   Y     S+   + N   +
Sbjct: 283 TIGRFFGVEPAKIDKALAEYTPQNNRSQLKRTADN-TLIIDAYNANPTSMMASISNFCKM 341

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKI 405
            +   +++ G   +  +       KI
Sbjct: 342 EAAHKMLILGDMRELGKDSAEEHQKI 367


>gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium cylindroides T2-87]
          Length = 453

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 146/420 (34%), Gaps = 39/420 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I K   E+ + L+   +   +   I  V  DSR I    +++ ++G + DGH FI   I
Sbjct: 1   MIVKTIQEIADMLNCDLVGEDKTSLIQGVGIDSRQITENALYIPLIGQRADGHTFIDSVI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +G +A +    ++          +   ++VD+T + L   A          ++ VTG++
Sbjct: 61  QKGVKATLWQKDHT------PYPEDITCILVDDTLEALQNLAKAYLNTLSCLVIGVTGSN 114

Query: 125 GKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           GK+S    +  I        +  G  + +IG   T+                    L   
Sbjct: 115 GKTSCKDMLYSIFSQEKKTQKTQGNRNNEIGLPLTV--------------------LDLD 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V  + +   + G         +      T +G  H++    ++    AK+ + E L
Sbjct: 155 KDVEVAILEMGMENKGEIDFLTHIARPDVSIITTIGSAHMENLGGKKQIAQAKLEILENL 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P              + +++   +   R++S G+ G    +  +    N   +      
Sbjct: 215 KPGGLFLYDKESPEIQECLLEMDIDPSKRLVSFGFNGDISIISSIDYTENG--IEFYCSS 272

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                     G+FQ  NAL    + +   I ++ +L+ L+ L +   R   +       +
Sbjct: 273 LTDKITLNALGDFQAKNALPCIYVALDQKISTSSILKGLKDLEMTKMRTALLKV--HDAK 330

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           I  D Y     S +  +  +  + + + I V     D    +  +   I     +  + T
Sbjct: 331 IIDDTYKSNPESAKAAIDTLMKVQAKKHIAVLADMLDLGPEENDLHAMIGCYAVEKNVDT 390


>gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102]
 gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal:
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 8102]
          Length = 449

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 158/449 (35%), Gaps = 40/449 (8%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ +  + +DSR ++AG  FV +VG + DGH F+ Q  A G +  VVS      D++A 
Sbjct: 22  PDQPVGTICTDSRQLKAGNFFVPLVGERFDGHRFLEQLPALGGQGAVVS-----LDWTAP 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + S      VD+T       A     +    ++AVTG++GK++    ++ +    G    
Sbjct: 77  LPSGLLHWRVDDTLAAYQQLALLHRRQLGLPLVAVTGSAGKTTTRELIRAVLAPLGAIQA 136

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +                      L   S      + +     G         +  
Sbjct: 137 SDGNNNNDIGVPLTV-------------LGAGSDHAALVIEMGMRGPGEIARLSRCTEPD 183

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  HI    +++A   AK  +   L P+    +I A D   ++ +  A     
Sbjct: 184 VAVITNIGTAHIGRLGSREAIATAKCEITAALHPQ-GVVVIPAGDPLLEQAL--AAVWQG 240

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           RVL V  +        +       ++ +     +     PL G     N L+A  +   +
Sbjct: 241 RVLRVRLEDDPDITADLIGAARNDRLLLD----EASIPLPLDGRHNARNLLLALAVGSHL 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-LEMILKNIRTITSGRI 384
           G+D A   +    +     R        +GG   +D  + ++    +   ++     GR 
Sbjct: 297 GVDPASAAQLQVNIPGGRNRR-----LQQGGLTLLDETYNASPEAVLAALDLLADQPGRR 351

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
             V G   +       +  ++A   A    D  ++ D      D  +  A ++  +    
Sbjct: 352 FAVLGTMLELGDRSIELHQQVAARAAALKLDGVVLVD----GGDEGQAMANVVSCLDRLA 407

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  A     + L   DV+++ A +G
Sbjct: 408 LVATPEAAAVPLGQWLQAGDVVLLKASRG 436


>gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
 gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
          Length = 470

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 151/421 (35%), Gaps = 30/421 (7%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   +   I  +S+DSR    G +FVAI G++ D H F+P    +   
Sbjct: 6   LREAAALIPGATVLGDDSVTIERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAVRNVS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++V+              N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AVLVTR--------TPQDWNVPALKVADTRVGLGALARGWRRRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +  +  ++   +T  +F  D        I L   L  L +     V    
Sbjct: 118 KEMIASIFAAAVGADARL---ATAGNFNND--------IGLPLTLFRLHAAHQLAVVELG 166

Query: 190 SSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P E  A+  A
Sbjct: 167 MNHPGETSELAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSP-EGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+      A        ++    +      V        ++I       +    + G
Sbjct: 226 DDAYASIWRVAATGNRIMDFALN-SAERTTEAAVKGTFAGNVLSIDTPAGRLEVTLQVLG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVD-YAH 364
           +   +NAL A    +A G+    +   LE    V GR +    V  +  G  +  D Y  
Sbjct: 285 DHNAHNALAATSAALAAGVSLDAIRRGLESFGAVKGRLQVKQGVLGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPR 421
             +S+   +  + +  + R++V+   G   D G    R I         D      D  R
Sbjct: 345 NPDSMRAAIDVLASRPAPRVLVMGDMGEVGDNGPAFHREIGAYARDRGIDALYAMGDASR 404

Query: 422 S 422
            
Sbjct: 405 D 405


>gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
 gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
          Length = 515

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 146/444 (32%), Gaps = 38/444 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R I  G  F+A+VG   DG+ F+ QA+A G    +          S        
Sbjct: 71  SICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAAGCAGAI--------GRSMPTDWPVG 122

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + V ++   L   A     ++  +++ +TG+ GK++  + V    +  G      G   
Sbjct: 123 FVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTKAMVALALESLGHIHQTQG--- 179

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L   L+  S      + +  +  G         K       N
Sbjct: 180 -------SENNHIGVPLTL---LALPSFSPACVIEMGMNHLGEILELSRICKPSVRVVLN 229

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++   + +    AK  LF +   +    I+ ADD     VM    +    +   G
Sbjct: 230 VGPAHMENLGSLEQVALAKGELFRD-SGRGDVCILNADDPL---VMAMPVSPDAMIRFFG 285

Query: 272 YQG-KFIHLKKVCAIHNKQQVTIS-----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                 + L         Q V  +     V G +  FL   PG     NA  AA +  ++
Sbjct: 286 RSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGFETTFLSC-PGIHLASNACAAACVATSL 344

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRI 384
           G+      E + K   V  R      +S    I   Y     S+ + L+ + ++   GR 
Sbjct: 345 GVPLKAASESISKFSPVGMRSRLEAISSNIQLINDAYNANPMSMTVALEILASVECKGRK 404

Query: 385 IVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           +V  G   +     R    K         + ++    P   D       +       ++ 
Sbjct: 405 VVALGDMLELGDFARGAHMKAIKCCQEVHVDVIGTAGPAFSDA---LNGLELEKCEVVKC 461

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            N           +   DV++V G
Sbjct: 462 ENSAALAEELTARVTPGDVVLVKG 485


>gi|293365894|ref|ZP_06612597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307702297|ref|ZP_07639255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|291315572|gb|EFE56022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307624100|gb|EFO03079.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
          Length = 457

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 78/455 (17%), Positives = 160/455 (35%), Gaps = 49/455 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + ++ +   DSR I  G +FV + G + DGH FI  A   GA   +     +      
Sbjct: 21  FADVQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAVVTLSEKEVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P ++VD+        A+    K   ++ AVTG++GK++    +  +   +  + 
Sbjct: 74  ----NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAHLLSTTYKTY 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G  +                  L              V      H  D H L  +  
Sbjct: 130 KTQGNYNNEIGLPYTVLHMPDDTEKL--------------VLEMGQDHLGDIHLLSELAH 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      KM++ +  +   S  +  AD      +++     
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG-MASGSLLLAPADS-----IVEDYLPT 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G   +   L+    +  K  +T      +     P+ G++   NA++AA + +
Sbjct: 230 DKKVVRFGPGAE---LEITDLVERKNSLTFKANFLEQALDLPVTGKYNATNAMIAAYVAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-- 380
             G+    + +  + L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 287 QEGVSEEQIHQAFQNLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPAN 345

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G+ I V     +       +  ++ L L+   + T      ED  ++        P  
Sbjct: 346 EGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVVDTVIF-YGEDIAELSQLASQMFPIG 404

Query: 438 ------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    ++    + ++   E L   D +++ G
Sbjct: 405 HVFYFKKTADEDQFEDLVKKVKESLGANDQILLKG 439


>gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
          Length = 465

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 94/450 (20%), Positives = 158/450 (35%), Gaps = 51/450 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS D+R IQ G +FVA+ G + DGH F+ QA  +GA  ++ S                P
Sbjct: 28  GVSIDTRTIQPGDLFVALAGVR-DGHEFVEQAFEKGAAGVIASRQVFG-----------P 75

Query: 92  ILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++V +T   L    A+           AVTG+ GK+SV   +      +G +   +   
Sbjct: 76  AVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGKTSVTQAIMAGLTLAGPAHSSV--- 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAGSF 209
                       +  + I +   L+ +       V     +H  +   L   ++  A   
Sbjct: 133 -----------KSYNNHIGVPLTLARMPRGTARAVFEIGMNHADEIRPLSRMVRPHAVVI 181

Query: 210 TNLGRDHIDYHQTQQA-YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           T +G  H +     +A    AK  +FE L P    A++ AD+ +   +   A  AG  V 
Sbjct: 182 TTVGPVHTENFPDGEAGVARAKAEIFEGLEP-GGVAVLNADNRWFDLLKGEAERAGATVR 240

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G  +     L           V   + GK  DF     G     N++    +  A+G+
Sbjct: 241 TFGTGEACDARLIDFQVPAGHAVVQARLHGKALDFPILQTGLHWGLNSMAVLLMLEALGV 300

Query: 328 DSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTI-TSGR 383
           D    L  L     + GR  E       G    +D  Y     S+   +  +    T+GR
Sbjct: 301 DLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMASAIATLGARETAGR 360

Query: 384 IIV----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            IV    +   G + +   R +   +     D+               +   +   +P  
Sbjct: 361 RIVALTDMLELGPEAEAFHRGLAEPLEAAAIDLVFC---------AGPLMKSLWDALPPT 411

Query: 440 IEKGNRIEAIRTA---IEMLNKQDVLVVAG 466
              G    A   A   ++ +   DV++V G
Sbjct: 412 RRGGYAESAAELAPQVVQAVEPGDVVMVKG 441


>gi|148997721|ref|ZP_01825285.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|168575141|ref|ZP_02721104.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|307068295|ref|YP_003877261.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756220|gb|EDK63262.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|183578837|gb|EDT99365.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|306409832|gb|ADM85259.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 457

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/479 (17%), Positives = 176/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAYLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQDLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P          E  ++ E  ++   E L+  D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKG 439


>gi|307824827|ref|ZP_07655050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
 gi|307734185|gb|EFO05039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
          Length = 519

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 96/505 (19%), Positives = 174/505 (34%), Gaps = 85/505 (16%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-----------AEAI-- 71
             +  I+ VS D+R I+ G ++VAI G+  DG+ F+ +A   G           A AI  
Sbjct: 18  GEDVAISSVSIDTRAIKPGQLYVAIKGHNFDGNEFVAEAEQAGAVAAIVHQGITATAIDG 77

Query: 72  -------------------------------------------VVSSAYSLQDFS-ATIR 87
                                                      V      ++      +R
Sbjct: 78  GHDCSRQSSAFPPSMEVRSVAISTTAWKQDDCKDAGGRATQGAVAEVEQRMEQLPRELMR 137

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P +VVD+TR  L+  A     K   +++ +TG++GK++V   V  I   +  + F  
Sbjct: 138 PTIPHIVVDDTRLALAELAGVWRKKAAVSVVGITGSNGKTTVKEMVAAILSVNADTLFTQ 197

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIA 206
           G  +                I +   L  L+ Q    V    ++H G  ++     +   
Sbjct: 198 GNLNN--------------DIGVPLTLLRLNEQHRYAVIEMGANHPGEIEYTSQYAQADV 243

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI+   +      AK  +  + L ++  A++  DDAY       A      
Sbjct: 244 AIITNVGAAHIEGFGSIDGVAKAKGEII-QTLKQDGVAVLNRDDAYFDYWKSIAGTRKVI 302

Query: 267 VLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              +  +          ++          +     +      L G   V NAL AA  C+
Sbjct: 303 SFGIDERADVTAHSVKTEIINHAFATTFELVTAKGELTVKLKLAGRHNVVNALAAATACL 362

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+  D   + + LE +  V GR + + +      I   Y   S SL+  L  +     G+
Sbjct: 363 ALDTDLQQIKQGLESVKPVTGRLQPLVSRLGNIVIDDTYNANSASLKAGLDVLAN-CDGK 421

Query: 384 IIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
             +V G  G+       I  ++      + +  +      + +  KI  E   G   F  
Sbjct: 422 RWLVLGAFGELGPDSPKIHEQMGELIKSSGVVRLLAVGSDAGNTVKIFGE---GATFFDT 478

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
           + + IE ++   + L   + +++ G
Sbjct: 479 QNDLIEMLK---QELKGDEAILIKG 500


>gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
          Length = 473

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 93/478 (19%), Positives = 163/478 (34%), Gaps = 51/478 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +    +   V  DSR +  G +F A  G + DGH +   
Sbjct: 1   MITLSLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         A      P +VV++    L   A  +  +    ++ +TG
Sbjct: 60  ----------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G  +            T +  +L            
Sbjct: 110 SAGKTSTKDLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAATEHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++  D      G   N+G  H+    +++A   AK  L E +LP++ 
Sbjct: 158 -VLEMGARGIGHIRYLADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVE-VLPEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ-QVTISVEGKDF 300
            A++ ADD   + +  R      RVL  G      +  +KV    + +    +       
Sbjct: 216 CAVLNADDPLVRAMASRTR---ARVLLFGEAPEADVRGEKVRMTPDGRPAFELHTPTGCS 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    L GE  V NAL AA +   +G+    + E L +   +      V     G  I  
Sbjct: 273 DVTMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVN 332

Query: 361 D-YAHTSNSLEMILKN------IRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA--LD 408
           D Y     S+   L+        R    GR   V G      D    +   +G++A  L+
Sbjct: 333 DAYNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLN 392

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +  V       E           G      +   +   A+      L   DV++V
Sbjct: 393 VSKLVAVGG----REASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 446


>gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
 gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
          Length = 487

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 157/475 (33%), Gaps = 48/475 (10%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P  +   +   +    R +   S D+R ++ G +F AI G   DGH F+  A+ +     
Sbjct: 9   PAALEAATGGRLIGAPRAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALEK----- 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVV-----DNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
              +A   +  +       P+L V     D     +         +    I+AVTG+ GK
Sbjct: 64  GAGAAVVAEARAKEFEGAGPVLAVPGEGDDPVLDAMRRLGLAARARTGAAIVAVTGSVGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +     ++ +    G +   +                   P+ L + L            
Sbjct: 124 TGTKEALRHVLSAQGATHASV----------ASYNNHWGVPLTLTRMLEDTR---FGVFE 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  +           ++      T +   HI++ ++  A  +AK  +F  L P    A+I
Sbjct: 171 IGMNHGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKP-GGVAVI 229

Query: 247 YADDAYSKEVMKRAHNAGC-RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             D+   + ++  A  +   RV++ G +    +   ++    +   V  +V G    +  
Sbjct: 230 NRDNPNYERLLAHAQASRAGRVITFGEHAAADVCAHRILTRPDVSVVDATVMGVPVTYQL 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD-- 361
             PG     N+L       A+G D A     L  L    GR E        G    VD  
Sbjct: 290 GTPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDES 349

Query: 362 YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAI 414
           Y     S+   L  +  I     GR I V G   +     +   R +   +A +  D+  
Sbjct: 350 YNANPASIRAALSTLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVF 409

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAI-EMLNKQDVLVVAG 466
                        + A +   +P  +        E +  A+   L   D ++V G
Sbjct: 410 ---------AVGPLMAHLFEALPMPVRGTAAPTAEGVTDAVLATLRSGDAVMVKG 455


>gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 462

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 100/468 (21%), Positives = 170/468 (36%), Gaps = 44/468 (9%)

Query: 11  FPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELIN             I   V +DSR +  G  FV + G   DGH F+ +A  +GA+
Sbjct: 5   LSELINLWGYPAEGKLSNNILGPVFTDSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAK 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A VVS      D +  I  N     VD+T +     A     +    ++AVTG+ GK++ 
Sbjct: 65  AAVVSK-----DSTVQIPENLICWRVDDTLQAYQQLALLHRQRLSIPVVAVTGSVGKTTT 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +       G           I+S + +N      P  + +A           + +E 
Sbjct: 120 RELITACLTTLGA----------ITSTSDNNNNDIGVPQTILQA-----DFSDAALILEM 164

Query: 190 SSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           +  GL + R             TN+G  HI    +++    AK  +    L      II 
Sbjct: 165 AMRGLGEIRRLSCCSNPDIAVITNIGNAHIGRLGSRKNIAIAKCEI-TTCLNPSGTVIIP 223

Query: 248 ADDAYSKEVM-KRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--- 301
           A D     ++ ++      RV  + +G +       K  A+     + ++      D   
Sbjct: 224 AGDPLLDSILSEKWPGRIIRVGLMPLGEEHTSASYIKKNAVDLLGVLDLNNNSLSVDKEA 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G     N ++A  + + +GI  + +      +    GR       +    +  +
Sbjct: 284 LTLPLEGMHNAVNFMLAIAVALELGISLSNMNNL--HVKTPCGRNSCFTYGNL--TVLDE 339

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA-DIAIVT 416
            Y  +  S++  L  + T   GR   V G      D       ++ + A+DL+ D  IV 
Sbjct: 340 SYNSSPESVKASLDLLVT-KPGRHFAVLGTMFELGDESIKFHSLIMQHAVDLSLDGVIVV 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D    E+ E + A +   +P F       EA+     +L   D L++
Sbjct: 399 SD---GEEAEAMVA-VGKQLPNFSIFSQPEEALPYLQSILKPGDNLLL 442


>gi|298207680|ref|YP_003715859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
 gi|83850317|gb|EAP88185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
          Length = 422

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 139/376 (36%), Gaps = 32/376 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S+D+R I+   IF A+ G+  +G+ +   AI QGA  +V+             + + 
Sbjct: 11  TGISTDTRKIKKDNIFFALKGDNFNGNTYADLAIDQGASYVVIDEE--------QFKKDD 62

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+  + L   AS         I+++TG++GK++    +  +  +   +   +G  
Sbjct: 63  RYILVDDVLQTLQELASFHRNYLGIPIISLTGSNGKTTTKELINAVLTKGYKTVATVG-- 120

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   LS      +  V + A+  G  +   +  +   G  T
Sbjct: 121 --------NLNNHIGVPLTL---LSMSKDTELGIVEMGANHIGEIEMLCNIAQPDYGYIT 169

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++   +++     K  L++ L   +    + ++DA   ++ K     G +  + 
Sbjct: 170 NFGKAHLEGFGSEEGVVIGKSELYKHLKSHDKIVFVNSNDAKQVDLTK-----GMKTFTF 224

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +   + +             + +   +      L G +   N   A  +     I   
Sbjct: 225 GLKQSDVWVSFKNVNPL-----VEMNLDNLTIKSNLIGVYNSNNIAAAVAIGRYFKISDK 279

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            ++E +E       R + +        +   Y    +S+++ L+N++ +       + G 
Sbjct: 280 HIVEAVENYVPSNNRSQIIK-KDNLTILLDAYNANPSSMKVALENLQALNDTPKYAILGD 338

Query: 391 GGDRDQGKRPIMGKIA 406
             +     +     IA
Sbjct: 339 MFELGASAKKEHMSIA 354


>gi|149006740|ref|ZP_01830426.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
 gi|147761655|gb|EDK68619.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
          Length = 457

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/479 (17%), Positives = 176/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  KTAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P          E  ++ E  ++   E L+  D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKG 439


>gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
 gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
          Length = 490

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 93/475 (19%), Positives = 176/475 (37%), Gaps = 45/475 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  KD  E  +           + I E S DSR      IFV I+G + D H FI  
Sbjct: 24  MENITIKDIVEACS--GQLLCGDENKVIKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDG 81

Query: 63  AIA-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           A+   GA      +  S  D       N P + V +T + +    +    +    ++AVT
Sbjct: 82  ALKINGA------TFTSEHDEPLEGFENKPWIKVADTVEAMQKVGTFYRNRMNLPVVAVT 135

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +  +          IG                 S I +   LS+L+ + 
Sbjct: 136 GSVGKTTTREMISTVLASQKKVFQTIG--------------NQNSQIGVPLTLSHLTRED 181

Query: 182 VTHVSVE-ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              V     S  G  +   + I+      T +G  HI   +TQ+     KM + + L P+
Sbjct: 182 EIAVLEIGMSERGQIEKLTNMIRPNVAVVTMIGVSHIAQLKTQENICLEKMDIVKGL-PE 240

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEG- 297
           +    +  DD   K +         +    G      +  +   + + Q +      EG 
Sbjct: 241 DGMVFLNGDD---KFLAPYRGKLSHKTFFYGMDKACDYRAENVHVKDGQTIFHFFYKEGK 297

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             KD + +    GE  V NALVA G+   +G+D     + L   H    +   + +    
Sbjct: 298 VVKDMEVVLGTMGEHNVRNALVALGVAHQMGLDMKAAAKALVTFHGQRQQMHTLKS---- 353

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             +  D Y  + +S++  +  + ++    GR I       +  + +R    ++   +A  
Sbjct: 354 CTLIDDTYNASPDSMKASVSVLSSMEGVKGRRIAALADMLELGEKEREYHYEVGKFIAGT 413

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIR-TAIEMLNKQDVLVV 464
            +  +     E  E+I   +       + K   +R +A++   +  ++  DVL++
Sbjct: 414 QVD-EVAAYGELSEEILKGVEDNNERIVVKHFESR-DALKDYLLTYVHPDDVLLL 466


>gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 480

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 91/490 (18%), Positives = 165/490 (33%), Gaps = 55/490 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  ++  + ++   I       R  N VS DSR    G +FVAI G + DGH F+ +   
Sbjct: 1   MSVEEIAKAVDGRLIGDAGSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVAKTAG 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAV 120
           QGA   +V                 P +VV +T   L   A     +  E     +I+ +
Sbjct: 60  QGATVAIVDHEVK--------SDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGL 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +    G +   +G                        AL      
Sbjct: 112 TGSVGKTTTKDLLSSLLATVGPTVAPVG-------------SFNNEIGLPLTALRVDEHT 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + AS  G                  +G  H+    +++    AK  + + LL  
Sbjct: 159 RFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLL-T 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIH--NKQQVTISV 295
              A++ ADD +   V+  A  A   VL  G    Q   +    V A    + +   +  
Sbjct: 218 GGTAVLNADDEH---VVPMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDA 274

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G        +PG   V NAL AA + +  G+    V   L   H +      + T +R 
Sbjct: 275 DGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNRE 334

Query: 356 GR--IYVDY--AHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKRPIM---G 403
           G     +D       +S++  L  ++   S        + + G   +    +  +    G
Sbjct: 335 GTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIG 394

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLN- 457
             A +L   AI+   + + +  + +   +  G             +   A +  I++   
Sbjct: 395 TYADELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARN 454

Query: 458 -KQDVLVVAG 466
               V+++ G
Sbjct: 455 HPDAVVLLKG 464


>gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 484

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 165/464 (35%), Gaps = 53/464 (11%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N +S+F   W E+       DSR I  G +FV + G + DGH FI  A   GA   +   
Sbjct: 43  NDVSLFEDTWLEKA----EFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGATVTLSEK 97

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             +          N P ++VD+        A+    K   ++ AVTG++GK++    +  
Sbjct: 98  EVA----------NHPYILVDDVLSAFQALAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 147

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +  +    G                 + I L   + ++       V      H  D
Sbjct: 148 LLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGD 193

Query: 196 QHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            H L  +        T +G  H+ + + +      KM++       +  A +    A + 
Sbjct: 194 IHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQI------ADGMAPVSLLLAPAD 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +++       +V+  G   +   L+    I  K  +T            P+ G++   N
Sbjct: 248 PIIEDYLPTDKKVVRFGSGAE---LEVTDLIERKDSLTFKANFLGQALDLPVTGKYNATN 304

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           A++AA + +  G+    + +  + L +   R E+    + G  I  D Y     ++++IL
Sbjct: 305 AMIAAYVGLQEGVSEEQIRQAFQNLELTRNRTEW-KKAANGADILSDVYNANPTAMKLIL 363

Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +    I     G+ I V     +       +  ++ L L+   + T      ED  ++  
Sbjct: 364 ETFSAIPANEGGKKIAVLADMKELGSQSVQLHNQMILSLSPDVLDTIIF-YGEDIAELAQ 422

Query: 431 EIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 P           ++    + ++   E L   D +++ G
Sbjct: 423 LASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKG 466


>gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
 gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
          Length = 494

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/425 (20%), Positives = 145/425 (34%), Gaps = 62/425 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V            +
Sbjct: 29  EIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VV 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +   +  
Sbjct: 80  DCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLI 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +            T    +L   L              A+  G   +    ++  
Sbjct: 140 TRGNLNNDLGVPMMLLELTDEHRFLVIEL-------------GANHLGEIAYTASMVRPD 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     +     AK  ++  L  +   AI+   D +  E++K+A     
Sbjct: 187 VALILNIGTAHLGEFGGRANIACAKSEIYSALTSQ-GVAILPFSDDFYPELLKQASQFTK 245

Query: 266 RVLSVGYQG---------------------------KFIHLKKVCAIHNKQQVTISV--- 295
             LS G +                              +    +         T++    
Sbjct: 246 LHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNID 305

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +        P  GE  V NAL AA    A+G+    + + L +     GR   +    
Sbjct: 306 IDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM-- 363

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDL 409
            G  I  D Y     S+    K +      +I+V   +F  G   D     +  ++AL  
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLE 423

Query: 410 ADIAI 414
            D  +
Sbjct: 424 IDHVL 428


>gi|167764247|ref|ZP_02436374.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
 gi|167698363|gb|EDS14942.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
          Length = 475

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 144/378 (38%), Gaps = 28/378 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +++DSR+   G +F+A+ G+  +G+ F  +A+  G+   VV  A      +     +T
Sbjct: 57  TGITTDSRNCPEGSLFIALKGDTFNGNAFAAKALEAGSTYAVVDEA------AYAPAGDT 110

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN    L   A+    +    I+ +TGT+GK++    +  +  +      +    
Sbjct: 111 RYILVDNCLHTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQ------KYNVL 164

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+ +      +           L   +   +  V + AS  G  +  ++  +   G  T
Sbjct: 165 YTLGNLNNPIGVP-------LTLLRLTTEHELGVVEMGASHPGDIKELVEIAEPDYGIIT 217

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L  +  S   ++ D+ Y +E+ +  +      ++
Sbjct: 218 NVGKAHLEGFGSFEGVIRTKGELYDYLRRQGNSTIFLHQDNPYLREIARGLNP-----IT 272

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G +        V               EG+       L GE+   NAL A  +    G+
Sbjct: 273 YGEENSLYINGHVTGNSPYLAFEWRAGKEGEFHQVHTRLIGEYNFPNALAAVTIGHFFGV 332

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           ++  + + L +      R +   T      I   Y     S+   + N R + + + +++
Sbjct: 333 EAEKIDKALNEYEPRNNRSQLKKTADN-TLIIDAYNANPTSMLAAIGNFRNMQAEKKMLI 391

Query: 388 FGCGGDRDQGKRPIMGKI 405
            G   +  +       +I
Sbjct: 392 LGDMRELGKDSAEEHQRI 409


>gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 459

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 162/420 (38%), Gaps = 43/420 (10%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   L   I   ++   KI  VS DSR I+   +++ IVG K DG +FI + 
Sbjct: 1   MIERSLDQISKMLGGEISDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G+ A ++       +F      N P ++VD+T+K L   A     +    I+A+TG+
Sbjct: 61  QNAGSPAFLIDK-----NFKIPKSINIPYIIVDDTQKALRDLARAYRKELDIKIIAITGS 115

Query: 124 SGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +GK++  + +  +        +  G  + +IG   TI  F++D                 
Sbjct: 116 NGKTTSKNIIHSVLSEKYKVEKTHGNLNNEIGVPLTILDFSEDT---------------- 159

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +  V +     G      +  +      TN+G  H+   +T++    AK+ + E 
Sbjct: 160 ----DIGVVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGIAKAKLEILEG 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L   +   +   DD   K+V+  ++    + +S G  G  +  K     +       S +
Sbjct: 216 L-KDDGIFLYNGDDEILKKVLP-SYEIKQKTISFGM-GDKVDFKVEAKEYTSTSTNFSYK 272

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +++    PL G  QVYN  +A  +     +    +   L K      R E +     G 
Sbjct: 273 DENYSV--PLLGSHQVYNGALAVLIGKLFDLSYDQIKVGLSKSSNNANRNELI--ERDGF 328

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            I  D Y     SL+  L+    +      IVV G   +    +  +  K  LD+    I
Sbjct: 329 DILDDAYKSNPQSLKQGLELAGFLDGYLNKIVVLGDMLELGDDELNLHYKSGLDIDPKKI 388


>gi|169831597|ref|YP_001717579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638441|gb|ACA59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 470

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 94/459 (20%), Positives = 173/459 (37%), Gaps = 49/459 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V++D+R +  G +FVA+ G++ DGH F  QA+ +GA  ++VS   S       + S
Sbjct: 25  RVKRVTTDTRVLAGGELFVALRGSRFDGHDFAGQAVDRGACGLLVSREVS-------VPS 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +L V +T   L   A     +    ++AVTG++GK++    +  +            
Sbjct: 78  GVAVLKVADTLTALQALALDNRRRCGLPVIAVTGSTGKTTTKDLLTAVLAA--------- 128

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               + +  ++       P+ L   L       V  V +   + G         +   G 
Sbjct: 129 -RFRVLATRENLNNEIGLPLTL---LDVDPVHEVAVVELGMRAPGEIDLLARICEPTGGV 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H++   +      AK  L +  +P    A+++A+      + ++A     RV+
Sbjct: 185 ITNIGETHLELLGSVANIARAKGELLDH-IPPSGFAVLHAESPG---MDEQARRCRGRVV 240

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G  +     L    A+ +     +   G D ++  PL G     NAL A  + + +G+
Sbjct: 241 RFGESESADFRLLDYRALPDGSVFRVRSAGGDEEYYLPLFGRHTALNALAAIAVGLELGL 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
             + +   LE+      R   V   + G  I  D Y  +  S++  L+ +  I +GR  V
Sbjct: 301 AVSEIRAGLEQARASSLRQAIV--KAGGLTIINDTYNASPASVKAALEVLAEIAAGRSTV 358

Query: 387 VFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
               G      R       +G          +VT          ++   I  G       
Sbjct: 359 AILGGMLELGPRSSEAHREVGMACAHAGVGQLVTM--------GELAVGIADGAREAGLP 410

Query: 443 GNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            +RI       E + TA  +  +  V++V  KG     +
Sbjct: 411 ASRIWACHTLEETVDTARRLAGENVVILV--KGSRAFQM 447


>gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 516

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 99/491 (20%), Positives = 171/491 (34%), Gaps = 46/491 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + +L      E++                 V  DSR + AG +FVA+ G + DGH +  +
Sbjct: 1   MIELSLGTIAEIVGGSLTSGTDPTALVTGSVEFDSRKVTAGGLFVALNGARVDGHDYAAK 60

Query: 63  AIAQGAEAIVVSSAY-----------------SLQDFSATIRSNTPILVVDNTRKFLSLF 105
           A+A GA   ++S                    + +   +    N     V    + L L 
Sbjct: 61  AVADGAVGCLLSRPVMDGMRPVPGVVVPPIPENERKRDSYATENDVDGAVAAVLRALGLI 120

Query: 106 ASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           A  +     +    ++ VTG++GK+S    +  I   +G +    G  +           
Sbjct: 121 ARHVIDILTQKGLVVVGVTGSAGKTSTKDMMATIFSAAGNTVAPPGSFNNEIGHPYTALK 180

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T    +L   +S +S++G+ H            H         G   N+G  H+    +
Sbjct: 181 CTAETQFL---ISEMSARGIGH----------IAHLAAIAPPKIGVELNVGTAHVGEFGS 227

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           Q A   AK  L E L P+   A++ ADD    ++  R         +V            
Sbjct: 228 QTAIAQAKGELVEAL-PENGEAVLNADDPLVAQMASRTRARVTSYSAVSTAAAVYATDIT 286

Query: 283 CAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              +   +  + +E ++       + GE QV NAL AA    A GIDS  +   L +   
Sbjct: 287 FDHNACARFRLHIEDENVHQITLLVAGEHQVSNALAAAAAAHAAGIDSETIAHSLNRHVG 346

Query: 342 VPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQG 397
                  + +  R   +  D Y   + S+   L  +             V G  G+  + 
Sbjct: 347 ASAHRMSLVSCPRNITVIDDAYNANNESMRAGLSALVHTARSRGSSAWAVLGPMGELGRE 406

Query: 398 KRPIMGKIALDLADI----AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            + +   I  +L +I     I   +N  S       A    GI   + + N +EA     
Sbjct: 407 SQTVHAAIGAELKNIGVHGLIAVGENSDSRALAT--AAEKTGITTLVARTN-LEAAHKLA 463

Query: 454 EMLNKQDVLVV 464
            +L+  DV++V
Sbjct: 464 PLLHADDVVLV 474


>gi|303255991|ref|ZP_07342019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
 gi|302597050|gb|EFL64168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
          Length = 456

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 82/479 (17%), Positives = 173/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEVAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +     +          N P ++VD+        A+    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKRVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++      
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQI------ 205

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A      A +  +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 206 ADGMASNSLLLAPADPIVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIHKAFQNLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P          E  ++ E  ++   E L   D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439


>gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
 gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
          Length = 476

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 177/484 (36%), Gaps = 58/484 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+      L+ + +        +  + V  DSR+++   +F+ + G  +DGH++I
Sbjct: 15  MNLDELLTSTGAWLVYESN------SSKAFSSVVMDSRNVKNNSLFIPLRGENQDGHVYI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI----RSNTPILVVDNTRKFLSLFASRLYGKHP-E 115
             A+  GA+  VV   Y  ++ +A +      +   + V N  K L   A     K P  
Sbjct: 69  EPALKNGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNL 128

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + +TG+SGK++    +  I  +      +    ST  +                    
Sbjct: 129 YKIGITGSSGKTTTKEILASIYSK------KYNTVSTKGNLNS-------ETGLPLSVFE 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +  +  G        +   A   TN+G  HI    T+QA    K  +F 
Sbjct: 176 VRPEHEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFS 235

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K+       +  ++  +    H +   V +V      +  K   A     ++    
Sbjct: 236 --FFKDDSLGFIPECEFTDFLKDIPHGS---VFTVSDNDSSLVQKVEDAGVLGSKIF--Y 288

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G++   LFPLPG + V NAL+   L    G  +  +   LE +  + GR + +     G
Sbjct: 289 KGEE--ILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGRSQVL----HG 342

Query: 356 GRIY--VDYAHTSNSLEMILKNIRTI---TSGRIIV--VFGCGGDRDQGKRPIMGKIALD 408
              Y    Y    +S++  ++   +I    +   ++  +   G + D   + I+      
Sbjct: 343 FVTYFLDCYNANPDSMKSAIEFCDSINTECAKHYVLASMLELGAESDYEHKKIIEDALKS 402

Query: 409 LADIAIVTDDNPRSEDPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVL 462
            AD      D+        I +      +      +  K N+ +A++  + E L+K D +
Sbjct: 403 NADNLYFFGDD--------ICSAFEGMNVSSSKKIYKFKTNQFDALKEQLKENLSKDDFV 454

Query: 463 VVAG 466
           ++ G
Sbjct: 455 LLKG 458


>gi|330752175|emb|CBL87134.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 140/388 (36%), Gaps = 35/388 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R+I  G +F A+ G   +G+ F  +A+ QGA   VV           T+  +  I
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE---------TMDQDIRI 63

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +  + L   A          +  +TG++GK++    +  +      +    G  + 
Sbjct: 64  IQVSDVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNN 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
                          + +   +  +S      +    ++H L+   L  I +   G  TN
Sbjct: 124 --------------HVGVPLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITN 169

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            G+ H++     +     K  L++     ++  ++  DD+     ++            G
Sbjct: 170 YGKAHMEGFGGLEGIIKGKSELYDFAFEHQTQVMVNFDDS-----LQSEKTKDHNRFGFG 224

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +    +  K          + +  +G        L G F   N   AA L +   +    
Sbjct: 225 HSKGGVTWKSTSDNEFAS-IQLETKGNSTSIKSQLSGHFNESNLAAAATLGLHFDVPLKD 283

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIV--VF 388
           +   LE       R E+  T      +   Y     S+ + ++N  +  TSG +I+  ++
Sbjct: 284 IKTALEAYVPSMNRVEWRKTQYN-AVLMDAYNANPTSMSLSIQNFGKWHTSGLMILGDMY 342

Query: 389 GCGGDRDQGKRPIMGK-IALDLADIAIV 415
             G         I+ + I+LD+A   I+
Sbjct: 343 ELGKASKVEHEAIVREVISLDMAQNCIL 370


>gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 451

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 101/421 (23%), Positives = 167/421 (39%), Gaps = 41/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+        EL   L    +   +  I  VS+D+R + AG +FVA+ G + D H F 
Sbjct: 2   MTLR------LAELAQVLDARLI-GEDGAITAVSTDTRTLGAGALFVALRGERFDAHDFC 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+A GA A++V     L           P LVV ++ K L      +  +    +LA+
Sbjct: 55  EQAVAAGASALLVERELPLA---------IPQLVVTDSLKGLGRLGRLVRERINPKVLAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V      I ++ G         +T  +F  +  +         +    +   
Sbjct: 106 TGSCGKTTVKEMATAILRQEGD------VLATAGNFNNEVGVPLTLLRLEPQHRFAVMEL 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H    A +  L        K  A    N+   H++   + +  F+AK  +FE L  +
Sbjct: 160 GANHPGEIAWTTSLA-------KPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGL-GE 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+ AD+ +  +   +A    C       +  F     V       +  +     + 
Sbjct: 212 GGTAIVNADNEFWPKW--QARGIHCAFSIEDQRQPFHARNVVINQQGCAEFVMVTPQGEI 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V NAL AA   +A+G   A V   LE +  V GRF        GG   V
Sbjct: 270 SLTLAIPGRHNVANALAAAAGTLALGASLASVKAGLELMAPVKGRFC---VQRWGGLTLV 326

Query: 361 DYAHTSNSLEMILKNIRTITS--GRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIV 415
           D  + + S+E +L  I  +T+  G  ++VFG      +    +   +G+ A +    A++
Sbjct: 327 DDTYNA-SVESVLAGIDALTAMSGYKVLVFGDMKELGEESAEQHARVGRHASERGLDAVL 385

Query: 416 T 416
           T
Sbjct: 386 T 386


>gi|149021236|ref|ZP_01835482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|147930337|gb|EDK81321.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
          Length = 457

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 173/481 (35%), Gaps = 57/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   + +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKLT------IHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         +     T  ++         + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + +      T +G  H+ + + +      KM++ + +
Sbjct: 150 EGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++   D     +++       +V+  G   +   L+    +  K  +T     
Sbjct: 210 --ASGSLLLMPADP----IVEDYLQTDKKVVRFGQGAE---LEITDLVERKDSLTFKANF 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  
Sbjct: 261 LEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   
Sbjct: 320 ILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDV 379

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           + T      ED  ++        P          E  ++ E  ++   E L   D +++ 
Sbjct: 380 LDTVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLK 438

Query: 466 G 466
           G
Sbjct: 439 G 439


>gi|71898206|ref|ZP_00680380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
          Length = 468

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 142/379 (37%), Gaps = 19/379 (5%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           LI   +   +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V
Sbjct: 8   LIAYWTGGYLHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                          + P +VV +T + L+  AS L       +LA+TG++GK+SV + +
Sbjct: 68  DH--------VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +   S  +            +             ++   +       + A   G
Sbjct: 120 VSILEHAAAQSSTV--------VYASSGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKSG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +  D +        N+   H++   +       K  ++  L P    A+I  DDA++
Sbjct: 172 DIGYLTDIVTPDVALVNNIAPAHLERMGSLLGVARTKGEIYAALRP-GGTAVINMDDAFA 230

Query: 254 KEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               ++   A C VL  G Q    +    +    +  +  +     +      L G   V
Sbjct: 231 LWFEQQCVPASCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNV 290

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA + +  GI  + +   L     V GR            I   Y     SL++ 
Sbjct: 291 CNALAAAAMALVAGIPLSQIAAGLGLARSVAGRQVAHALPGGAVLIDDSYNANPGSLDVA 350

Query: 373 LKNIRTITSGRIIVVFGCG 391
           +  + T  SG   +V G  
Sbjct: 351 IDTLTT-ASGPGWLVLGDM 368


>gi|198274199|ref|ZP_03206731.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
 gi|198272874|gb|EDY97143.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
          Length = 430

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 141/379 (37%), Gaps = 26/379 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            + N +++DSRH   G +F+A+ G   +G+ F  Q++AQG    VV              
Sbjct: 11  TECNGLTTDSRHCPEGSMFLALKGETFNGNAFAAQSLAQGCRYAVVDEP------QYASP 64

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N  IL+V+N  + L   A+    K    ++ VTGT+GK++    +  + +      +  
Sbjct: 65  ENPYILLVENCLQTLQQLANYHRRKLGTRMVGVTGTNGKTTTKELIAAVLKEKFNVLYTQ 124

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G          +       P+ L   L       V  + + A+  G  +  +   +   G
Sbjct: 125 G----------NFNNHIGVPLTL---LRLKPEHEVAVIEMGANHPGEIKTLVHIAEPDCG 171

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCR 266
             TN+G+ H++   + +     K  L++ L  K  +   I  ++ +  ++ +     G  
Sbjct: 172 IITNVGKAHLEGFGSFEGVIRTKGELYDYLREKGNATIFIQNENPHLNKIAE-----GLN 226

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +  G          V +      +  +  G   +    L G + + NAL A  +    G
Sbjct: 227 CVRYGQTSGLDVSGTVLSCSPFLHLGWTAGGASHEVKTHLIGAYNLDNALAAVAIGRYFG 286

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ++   +   L        R + V T S    I   Y     S+   L N R + +   + 
Sbjct: 287 VEDTQICHALSSYVPQNNRSQLVQTESN-TLIVDAYNANPTSMMAALVNFRQMEAEHKVA 345

Query: 387 VFGCGGDRDQGKRPIMGKI 405
           + G   +  +G R    K+
Sbjct: 346 ILGDMKELGEGSREEHQKV 364


>gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella kingae ATCC 23330]
          Length = 454

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 146/416 (35%), Gaps = 29/416 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I      P     + IN + +DSR  Q+G +FVA++G   D H F+
Sbjct: 1   MKTLDL------NFICTALNLPQPENNQPINRIITDSRQAQSGDLFVALIGENHDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +A+GA A+V    +               L VD+T   L   A          +  +
Sbjct: 55  ADVLAKGALALVSRDDFVGVSG---------CLKVDDTLIALQKLAKAWRQVINPFVFGI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  + +            +T  +F     L              +   
Sbjct: 106 TGSSGKTTVKEMLTTVLRE---KFGADAVLATAGNFNNHIGLPLTLLNLRESHRYAVIEM 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLP 239
           G+ H    A    + Q              N  R HI            AK  +++  + 
Sbjct: 163 GMNHFGELAVLTQIAQ-------PNVALVNNAMRAHIGCGFNGVDDIARAKSEIYQG-IQ 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  AI+  DDA          + G +  + G+    IH + V       +  +    + 
Sbjct: 215 QDGLAILPIDDANLPIFQAACKDLGLQTQTFGFAQGDIHAENVKLQPLVSEFDLVQGSER 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G+  V NA  AA L +A G+    +   L     + GR + V    +   I 
Sbjct: 275 VHITLPVAGKHNVSNACAAATLALAGGVKFTEIARGLANFANIKGRLQ-VKHGIKNSTIL 333

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            D Y    +S++  L  +  + +  + V+   G   +     +  +I +   ++ I
Sbjct: 334 DDTYNANPDSMKAALDVLAKMPAPHVFVMGDMGELGENEAPKMHEEIGIYAKNLGI 389


>gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 472

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 165/451 (36%), Gaps = 32/451 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-DFSA 84
            +   + ++ DSR   +  +F+AIVG + DGH F+ QAI  G   IV+   ++    ++ 
Sbjct: 25  PDLCFSGIAIDSRTAMSSDLFIAIVGERLDGHDFVRQAINGGVRGIVIDKKHAESFSYAR 84

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +     +VV +T + L   A++       +I A+TG++GK++       +        
Sbjct: 85  MAKLELGCVVVPDTTEALGKIANQYRKGFGVSIAAITGSNGKTTTKELTAAVLAAKYRVH 144

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G          ++      P  L   L    +     V +  +  G         + 
Sbjct: 145 KSTG----------NHNNQIGLPFTL---LGLGPAHQWAVVELGMNHFGEIARLTQICEP 191

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  H++   + +    AK  L E +      A++  DD     +  +     
Sbjct: 192 DIGVITNVGPGHLEGLGSVEGVLAAKGELLENM--ANKTAVLNLDDKLVSTLADKYQG-- 247

Query: 265 CRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              +  G   K     K +   +   + T+ ++ ++      L G+  V+NAL AA + +
Sbjct: 248 -ETVLFGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLHGDCMVHNALAAAAVGV 306

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--- 380
           + G+    + + LE ++ V GR   V   +    I   Y     S    +  ++ +    
Sbjct: 307 SAGVSPKEIRDALETVNPVKGRQNVVSLGNDVQLIDDAYNANPASFAAAVMTLQALAKAS 366

Query: 381 SGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            GR+I+         D        +G++A       +            K   E   GI 
Sbjct: 367 KGRMIMAVSDMMELGDYSVDAHMELGRMAAQAGVSLLFISGYYAG-WTAKGAREAGMGID 425

Query: 438 GFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
                EK N +  +  A+     +D ++V G
Sbjct: 426 QVFIDEKPNIVTRLAEAV---QAKDRILVKG 453


>gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Francisella cf. novicida 3523]
          Length = 453

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 151/399 (37%), Gaps = 41/399 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FVAI+    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYSGEDVSIQTVAINSNEVRQDCLFVAII-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+A++VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAVLVSKKQDL---------DIPQVVCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           +V   +      +++    G  +  +G   TI     +                      
Sbjct: 111 TVKEMIVTLLGSKKVHFTQGNFNNYLGVPMTILETPHNVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L PK+
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGASHLENLKTLDGVMIEKGELLKAL-PKD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD        +  +      S+  Q   I +           V I +  K++ 
Sbjct: 210 GFCIVNLDDERIPAYADKL-DCKKITCSMSNQDADILILDYQVTPELYDVKIRIFDKEYS 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  + N+++A    +A G +    L++ + +    GRF     N +   +   
Sbjct: 269 YQLPNIGKHNLSNSMLAIASVVAAGFEPNSFLQNTQNIKNYKGRFSTEKLNDKLTLVDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           Y  ++ +++  ++++      R+I +       D+ +  
Sbjct: 329 YNASAGAVQAAIEDLAEFDGKRVIAITSMRELGDEAENY 367


>gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
 gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
          Length = 457

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 83/481 (17%), Positives = 172/481 (35%), Gaps = 57/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E++  +        + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKLT------IHEVVQAVGAKNDVSIFEDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAVVTLSEKEVA----------NHPYILVDDVLSAFQTLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G                 + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  +        T +G  H+ + + +      KM++ + +
Sbjct: 150 EGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P     ++   D     +++       +V+  G   +   L+    I  K  +T     
Sbjct: 210 AP--GSLLLAPADP----IVEDYLPTDKKVIRFGQGAE---LEVTDLIERKDSLTFKANF 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+ G++   NA++AA + +  G+    + +  + L +   R E+    + G  
Sbjct: 261 LEQALDLPVTGKYNATNAMIAAYVALQEGVSEEQIRQAFQNLELTRNRTEW-KKAANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++++IL+    I+    G+ I V     +       +  ++ L L+   
Sbjct: 320 ILSDVYNANPTAMKLILETFSAISANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDV 379

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + T      ED  ++        P           ++    + ++   E L   D +++ 
Sbjct: 380 LDTVIF-YGEDIAELSQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLK 438

Query: 466 G 466
           G
Sbjct: 439 G 439


>gi|312130994|ref|YP_003998334.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Leadbetterella
           byssophila DSM 17132]
 gi|311907540|gb|ADQ17981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leadbetterella
           byssophila DSM 17132]
          Length = 433

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 141/394 (35%), Gaps = 34/394 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++D+R+IQ   +F A+ G K +G+ F  QAI  GA   VV          A+++   
Sbjct: 14  SGITTDTRNIQKDNLFFALKGEKFNGNGFAEQAIQDGAAYAVVD--------DASLKGKE 65

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++  ++  + L   A     +    ++A+TG++GK++    + ++           G  
Sbjct: 66  RMIYCEDVLETLQALARHHRRQFDIAVIALTGSNGKTTNKELLTRVL----------GQK 115

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             + +   +       P+ L   LS      V  + + A+            +   G  T
Sbjct: 116 YKVHATKGNLNNHIGVPLTL---LSMPDDAQVAIIEMGANHQKEIALLCSIAEPTHGFIT 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NLG+ H++    ++     K  LF+ L        + A+D   + + +        +L +
Sbjct: 173 NLGKAHLEGFGGEEGIRKGKGELFDFLKQSGGIVFVNANDPKVRALAEE-----RNILPI 227

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            Y G       +            V GK +     + G++   N   A  +     +   
Sbjct: 228 VYYGDDEDALLIKEESPVVVFESPVSGKTY--TTFIGGKYNFDNMQTAHAIGRYFDVSED 285

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--- 387
              E +   +    R + V   +    I   Y    +S+E  LK+   + +    VV   
Sbjct: 286 KACEAIAHYNPDNNRSQHVMVGTNHF-IMDAYNANPSSMEASLKSFGALKTDSPKVVVLG 344

Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  G   +     I   ++    D  ++  +N
Sbjct: 345 DMYELGDYSEAEHAAIGKLLSELKFDDVVLFGEN 378


>gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 440

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 149/408 (36%), Gaps = 42/408 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   + +  Q  +  +N++  DSR I+ G IF+ + G +  GH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDW-SQLADLSVNKIEFDSRLIEKGDIFLPLKGARY-GHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA                        L+VD+        A     K    ++AV
Sbjct: 56  EIAFDNGAIISFSEKEVEQAH-----------LLVDDNLAAFQTLAKYYLEKTKVPVIAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +   +    G  +                  L      +   
Sbjct: 105 TGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNNEIGLPYTILHMPEDTEKL------VLEM 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+ H         L Q             T +G  H+++  +++     KM +   L  +
Sbjct: 159 GMDHPGDIDFLSQLAQ-------PELALITLIGEAHLEFMGSRENIAKGKMGITAGLHGE 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    +A+  E          ++   G  G+ + + K+  I +K+++T      D 
Sbjct: 212 LIAPADPIINAFIPE--------NQKISRFGLPGEDLFITKL--IEHKERLTFETNFLDE 261

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG++   NA++AA + +  G+  A + + L+++ +   R E+  + +    +  
Sbjct: 262 SITIPVPGKYNATNAMLAAYVGLHYGLTEAEINKALKEVELTRNRTEWKKSKNGADLLSD 321

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKI 405
            Y     ++ +IL+  + I     GR I V     +       +  ++
Sbjct: 322 VYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPTAAQLHKEV 369


>gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 461

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 94/460 (20%), Positives = 164/460 (35%), Gaps = 35/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        +      +  +S D+R +  G +F+A+ G+  DGH  I  A+ +GA AI+
Sbjct: 9   ELETATGGTFLGNTSVSVTGISIDTRTLTHGDLFIALKGDNSDGHAHITTALEKGAAAIL 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             SA    D          IL+V +T   L   A     +    ++AVTG+ GK++    
Sbjct: 69  AHSAEGFTDP--------RILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGKTTTKEM 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++     SGL+                   +  +   +   L+ L  +    +S    +H
Sbjct: 121 LRLCLAPSGLTHA--------------AEASYNNHWGVPLTLARLPREASFCISEIGMNH 166

Query: 193 -GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G        ++      T +G  H+ +  +  A    K  +   L PK   AI+  D  
Sbjct: 167 PGEILPLAKMVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITAL-PKGGIAIVPDDAH 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++     A  A   + + G       HL  +    +     +S++GK F+   P PG  
Sbjct: 226 GTEFFTAEAEKAQAVLWTCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPAPGTH 285

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA+ A   C A+G D A     L       GR            +  + Y  ++ S+
Sbjct: 286 LARNAVAALAACAALGADVAKAANALADFRPGKGRGALTQIVGGAITLLDESYNASAASI 345

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L  +R I + R I V G   +  +    +   +   A   AD+        ++    
Sbjct: 346 RAALDVLRHIPATRRIAVLGDMRELGEFSISEHQALAAPAASAADLVFCCGSYMKT---- 401

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   +     G   +   + A       L K D ++V G
Sbjct: 402 -LFDALPPSKQGAWAESAALLA-PHVCAALRKGDAVLVKG 439


>gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           harveyi ATCC BAA-1116]
 gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116]
          Length = 454

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 164/451 (36%), Gaps = 36/451 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++       +  I  VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V 
Sbjct: 9   IADITGGERVGNDLSIESVSTDTRSIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              ++      +          +++  L   A+ ++       +A+TG+ GK++V   V 
Sbjct: 69  KRVNVNVPQVVVG---------DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q  G   F      T  +F  D  +           L          + + A+  G 
Sbjct: 120 SILQLKGKVLF------TAGNFNNDIGVP-------LTLLRSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            ++    +K       N+   H++   +      AK  +++ L      AI+  D     
Sbjct: 167 IEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGL-AAGGIAIVNLDSNGGA 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQ 311
           +  +   +      S        +   +      +    + I+   ++ +    + G+  
Sbjct: 226 KWDEVLADKNVITFSQSNADADFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + + +G     +   L+ L+ V GR E    + +   I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALKMGATLEEIRSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  +      R +++       ++     R +    A    +  +    +       K+
Sbjct: 346 AVDLLAAFQGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD------AKV 399

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +E+  GI  F      I+ I+  ++    +
Sbjct: 400 ISELCDGI-HFETHQEMIDYIKQHLDQAVPE 429


>gi|199598809|ref|ZP_03212221.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
 gi|199590314|gb|EDY98408.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
          Length = 462

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 152/412 (36%), Gaps = 38/412 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+      +    V+ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKMT------LAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENI 117
           FIP        A   + A  + +    + +  P LVV +    +   A      K    +
Sbjct: 54  FIPA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKV 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++GK++       I         Q     T  ++  +  +           LS  
Sbjct: 108 VAITGSNGKTTTKDMTAAILAT------QYHVVKTPDNYNNEIGVPM-------TILSME 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V  + +     G         +      T +G  HI++ +T+    +AKM + + L
Sbjct: 155 PNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGL 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
             ++   I   D+     ++ RA        + G   +       +    N  + T+  +
Sbjct: 215 -KEDGTFIFNGDEPL---LVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVE-Q 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  F  P+ GE+ V NAL A  +     +    + + L    V   R +++     G 
Sbjct: 270 WPELTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALAHFQVTANRTQWL-IGDVGE 328

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +I  D Y     +++ ++ +     T+GR I V G   +  +  R +   +A
Sbjct: 329 QILSDVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGEQSRALHAGLA 380


>gi|307705389|ref|ZP_07642248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
 gi|307621052|gb|EFO00130.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
          Length = 457

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 175/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IYEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +     +          N P ++VD+        A+    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKELA----------NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +               T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------IYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  +        T +G  H+ + + +      KM++ +  + 
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSDIAKGKMQIADG-MS 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  +  AD      +++    A  +V+  G   +   L+    +  K  +T      +
Sbjct: 211 SNSLLLAPADP-----IVESYLPADKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  + 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQDLELTRNRTEW-KKAANGADVL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   I 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVID 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P          E  ++ E  ++   E L   D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439


>gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 444

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 178/483 (36%), Gaps = 78/483 (16%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+     +L+++ +            E S D+R I    +F A+ G+K+DGH F+ +
Sbjct: 4   LDDLLIATGGKLVSKGNEI--------FKEASIDTRTIGKNDLFFALKGSKKDGHEFVDE 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ + A   VVS    +         N  +++VD+T K L   A  L  K    I+AV G
Sbjct: 56  ALIK-ASGAVVSKNEGMDF------KNKTVVIVDDTLKSLQNLAGYLRKKFKGKIIAVVG 108

Query: 123 TSGKSSVASFV-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           ++GK++    +        +I +  G  +  IG    IS    +  +             
Sbjct: 109 SNGKTTTKELIASFLSKKYKILKTEGNFNNNIGVPLCISRIENNTEIMVLE--------- 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +  +  G  +   D +       TN+G +HI+   + Q     ++ +  
Sbjct: 160 -----------LGTNRPGDIKELCDIVYPDYALITNIGYEHIEGFGSIQGVREGELEI-- 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
             LP         DD +  + +KR      ++L+ G   +     + +   ++  +    
Sbjct: 207 --LPYVKTVFANGDDKFLMDGLKRYSG---QILTFGMSKECDFRAENINFYNDHVEFDFY 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +   F    PL G + +YN   A  +   +GI    + +  E    V  R E +  N  
Sbjct: 262 SDIAAFAVKTPLVGIYNIYNLTGAIAVATFLGISKCSIQQITESFTSVKMRGEIIKIN-- 319

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  I+ D Y    +S+++ L+ +     GR  V        D  +      +A +     
Sbjct: 320 GVEIFFDAYNANPSSMKVALQELTRRKKGRRTVAVLG----DMLELGEFTDLAHEEVGKW 375

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR----------IEAIRTAIEMLNKQDVLV 463
           +         +   I  +I  G+  FI+   R          I+A     + L   ++++
Sbjct: 376 V---------NEMGI--DIFIGVGKFIKNALRYVNGYVFNDPIQAAEFLKKELKGSEIVL 424

Query: 464 VAG 466
           + G
Sbjct: 425 IKG 427


>gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 46P47B1]
          Length = 494

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 163/477 (34%), Gaps = 66/477 (13%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V            +
Sbjct: 29  EIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VV 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +   +  
Sbjct: 80  DCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLI 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +            T    +L   L              A+  G   +    ++  
Sbjct: 140 TRGNLNNDLGVPIMLLELTDEHRFLVIEL-------------GANHLGEIAYTASMVRPD 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+     +     AK  ++  L  +   AI+   D +  E++K+A     
Sbjct: 187 VALILNIGTAHLGEFGGRANIACAKSEIYSALTSQ-GVAILPFSDDFYPELLKQASQFTK 245

Query: 266 RVLSVGYQG---------------------------KFIHLKKVCAIHNKQQVTISV--- 295
             LS G +                              +    +         T++    
Sbjct: 246 LHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNID 305

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +        P  GE  V NAL AA    A+G+    + + L +     GR   +    
Sbjct: 306 IDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM-- 363

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDL 409
            G  I  D Y     S+    K +      +I+V   +F  G   D     +  ++AL  
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLE 423

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D   +T  N  +     I  E       + +K + ++ +R  +   +    ++  G
Sbjct: 424 IDHV-LTLGNHMAHTATAI-NEQKSIARHYTDKPSLLKDLRQLLSHGSA--TVLFKG 476


>gi|298373389|ref|ZP_06983378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274441|gb|EFI15993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 434

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 154/446 (34%), Gaps = 44/446 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+   ++ DSR      +F A+ G   DG+ F  +A+  GAE  V+            + 
Sbjct: 12  RQFPNITIDSRCCPPESLFFALKGKNNDGNRFAEKALQNGAEYAVIDDP--------DVA 63

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++   +VV +    +   A+    +    I+AVTGT+GK++    +  +  +        
Sbjct: 64  ADDRYIVVPDVLTAMQQLAAYHRRQMKARIIAVTGTNGKTTTKELIATVLAKQ------- 116

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +    +++      P+ L   L          + + A+  G      D  +   G
Sbjct: 117 ---YKVLYTERNHNNHIGVPLTL---LRLTEEDQFGVIEMGANHKGEIASLCDIAQPDFG 170

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN GR H++   + +    AK  LF+ L   +    I   ++   E  K   N     
Sbjct: 171 IITNFGRAHLEGFGSFEGVIEAKTELFDYLREHKGRVFINIGNSNIVEKAKGIGN----- 225

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAGLC 322
           +S G       +           +++S   + F          L G + + N L A  + 
Sbjct: 226 ISYGINNDKADVSGYI-TGQNPCISVSWASQRFFVVAQSVKTHLVGGYNLENLLAAVVVG 284

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   ++   + E L        R +++ T+     I   Y    +S+   L+N  ++   
Sbjct: 285 LFFEVEPNDINEALCGYIPENHRSQYMKTDRND-LIIDAYNANPSSMAAALRNFNSLPYP 343

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             +V+ G   +          +I   + +   + +     E    I A I  G   F+  
Sbjct: 344 HKMVILGDMLEMGDTAVEDHEEIVNIIRNQLSIDEVLLVGE----IFASIDSGYKTFVTV 399

Query: 443 GNRIEAIRTAIEMLNK--QDVLVVAG 466
            +      +A    N      +++ G
Sbjct: 400 DD-----LSAYLEANPPKDTAVLLKG 420


>gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
 gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
          Length = 502

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 151/421 (35%), Gaps = 50/421 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ G   DGH ++  AI +GA AI+VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALKG-NGDGHDYVLDAIDKGANAIIVSKHIDIVD-------KN 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--- 147
            I++VD+  + L   A    G      +A+TG+ GK+S    ++ +   +   S  +   
Sbjct: 75  KIILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKTSTKGALKTLLTETSDKSLHLLYN 134

Query: 148 --------GPT--------------------------STISSFAQDNRLTTPSPIYLAKA 173
                   G T                          S I      +R    + + L   
Sbjct: 135 EANKEEFEGNTEYSTTEYKKVCDAASTRLTYKLPLEVSYIKGLVFASRGNFNNHLGLLIN 194

Query: 174 LSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           L+ +S      +     +H G  +  +  +K      TN+   H+++  + +    AK  
Sbjct: 195 LASMSDDTEYAIFELGMNHKGEIRELVQILKPNIAMITNVSEAHLEFFNSLEDIAEAKCE 254

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQ-Q 290
           +FE    K   A+I A+     +++    N    ++ + G          + A   KQ  
Sbjct: 255 IFENF-SKNDIAVINANTNCYNKILSILKNLSIDKIYNFGASYNTSAELTLYANLGKQVH 313

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +   +  K  +   P        N +    +   +G +  +   HL  +    GR E + 
Sbjct: 314 LKYKINNKTIEITIPFIPRHFAENYIGVLLIINILGKNLDIAANHLANISPTKGRGEMIN 373

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  I   Y  +  S++  L+ ++ + +     + G   +  Q    +  ++   + 
Sbjct: 374 IQ-NCCVICDYYNASPQSMKAALEYLKQVPAENKTAIIGDMLELGQNSEALHKELVPYIL 432

Query: 411 D 411
           D
Sbjct: 433 D 433


>gi|217967632|ref|YP_002353138.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
 gi|254766000|sp|B8E324|MURC_DICTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217336731|gb|ACK42524.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
          Length = 464

 Score =  186 bits (472), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 162/425 (38%), Gaps = 48/425 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   P+ +    + +V+SSA     +++      N PIL   +    L+          
Sbjct: 55  GHN--PENVNN-VDLVVISSAIPPDNEEYVYAKERNIPILHRSDLLADLTK--------- 102

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  + V G  GK++  S +  + +     + +I PT  +    +D              
Sbjct: 103 EKKSIIVGGAHGKTTTTSMIALVLE-----NNKIDPTILVGGELEDIGGNAKLGNG---- 153

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             YL ++G         S G        +       TN+  DH+DY+++ +   +  +++
Sbjct: 154 -EYLVAEGDE-------SDGSILK----LDPYILVITNIDNDHLDYYKSLEKIKDTFLKV 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E+ +PK   A++  D    ++++++  N      + G+         +    +  +  +
Sbjct: 202 IEK-VPKGGFAVLNLDCENVRDIIRKIKNKEY--YTYGFSNADFKADNIVLNLSGSEFDV 258

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               +        +PG+  + N+L A  +   +G+D     + LE+   V  R +  G  
Sbjct: 259 YFRNEKLGRVKLRVPGKHNILNSLSAIAVSKILGLDFETTTKALERFQGVQRRIQLKGII 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                ++ DY H    ++  L+ +R + + R++VVF                 AL L D+
Sbjct: 319 EDDILVFDDYGHHPTEIKATLETLR-LYNRRLVVVFQPHRYTRTYFLSKEIAEALSLGDV 377

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVV 464
            I+T+     E P      + I  EI    P        N IEA   A  +L K D+L+ 
Sbjct: 378 IILTEIYSAGEKPIPGVSSKNIYDEIREKYPNLEVYLVDNIIEAASKAKSILKKGDLLLT 437

Query: 465 AGKGH 469
            G G+
Sbjct: 438 LGAGN 442


>gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
 gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
          Length = 470

 Score =  186 bits (472), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 160/447 (35%), Gaps = 31/447 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E + + V +D+R +  G +FVA+ G + DGH F+  A     +A   ++       +   
Sbjct: 21  EGRFDSVGTDTRALAPGQLFVALRGERFDGHDFVADAA----KAGAAAAMVDAAWSAGKA 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  P+LVVD+TR+ L   A+    +    ++ VTG++GK++V      I +        
Sbjct: 77  DAGLPLLVVDDTRRALGTLAAAWRARFALPLIGVTGSNGKTTVKEMCAAILRVQASRDGF 136

Query: 147 I--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                 +T  +   D  +            + +   G+ H         L Q        
Sbjct: 137 GEESVLATRGNLNNDIGMPLTLLELRDFHRAAVIEMGMNHPGEIGYLSALAQ-------P 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N  R H+    +       K  ++E L      A+I ADD ++     R+ NAG
Sbjct: 190 TVALVNNAQRAHLQGMGSVDEVAREKGAIYEGL-GGAGVAVINADDPHAGYW--RSLNAG 246

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +++ G         +        ++ + +     DF   +PG   V NAL AA  C+A
Sbjct: 247 RPIVTFGIDHPADVSARCTLRGLGSRLELDIPQGKIDFALQVPGLHNVRNALGAAAACLA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            G+    V E L       GR +   +  RG  I  D Y    +S+ + +  +  +    
Sbjct: 307 AGVPLEAVAEGLAGFAGTRGRLQR-RSGPRGALILDDSYNANPDSVRVGIDVLAAMPGHT 365

Query: 384 IIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            +V+   G   +        + G       D           E           G   F 
Sbjct: 366 WLVLGDMGEVGETSAQVHDEVGGYAKSKGIDGLF-----ALGEMSAVAAHNFGEGARHFT 420

Query: 441 EKGNRIEA-IRTAIEMLNKQDVLVVAG 466
                +EA ++  +  L+   V++V G
Sbjct: 421 S----VEALVKALVPRLDADSVVLVKG 443


>gi|168491448|ref|ZP_02715591.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183574119|gb|EDT94647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
          Length = 457

 Score =  186 bits (472), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 174/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +     S          N P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEVS----------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLILAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P          E  ++ E  ++   E L   D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439


>gi|189502568|ref|YP_001958285.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498009|gb|ACE06556.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 433

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 135/379 (35%), Gaps = 29/379 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +VS DSR   A  IF A+ G   DG++F  QA+A+GA   V+       D     + +  
Sbjct: 20  QVSFDSRKDVANTIFFALKGACCDGNIFASQALAKGAAYAVI-------DNPRYYQEDER 72

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+V++T + L   A     +    I+A+TG++GK++    +  +  +      +    +
Sbjct: 73  YLLVNDTLETLQQLAKLHRSQLNIPIIAITGSNGKTTTKELIYAVLSQ------RYNCYA 126

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F     +           LS   S  +  + + A+  G      + ++   G  TN
Sbjct: 127 TSGNFNNHIGVP-------ISLLSIKKSTEMAVIEMGANHIGEIAQLCEIVQPTHGLITN 179

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H++           K  L+  L        I + D+    V+    N     +   
Sbjct: 180 ISHAHLEGFGGINGVIKGKSELYTYLKQHGGVPFINSADS----VLLNVANGFVNPIYYP 235

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +G + +    C +       +    +       L G+   +N   A  +    GI+  +
Sbjct: 236 QKGDYYY----CELKEANPYLVYTSEQSTTVTTQLIGKHHFHNVAAALCIGKYFGIEPNM 291

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           V   ++  +    R + +   +    +   Y     S++  L++   + S   +++    
Sbjct: 292 VNTAIQAYNPSNNRTQLIKKGTNSI-LLDAYNANPASVQAALESFSFLKSMYKVLILADM 350

Query: 392 GDRDQGKRPIMGKIALDLA 410
            +  +        I    A
Sbjct: 351 NELGEESLAFHQAIIEKTA 369


>gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
 gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
          Length = 536

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 147/448 (32%), Gaps = 60/448 (13%)

Query: 5   DLIYKDFPELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           D++     E+   +     ++     +   N V SDSR I+ G +FVAIVG   DGH ++
Sbjct: 26  DMMPMSISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-----RLYGKHPE 115
             A   GA   +V              +N   +VV+N+ + L L A      R     P 
Sbjct: 86  KNAEKSGAVVAIVEHVVE--------GTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPF 137

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+ GK++    ++ +    G +   +G  +              +  +L     
Sbjct: 138 TIIGITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAE-- 195

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +              +G  H+    + +    AK  +  
Sbjct: 196 -----------MGANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVR 244

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
            LLP    A++ +DD     +     N   R      +        K     +   + + 
Sbjct: 245 GLLPH-GIAVLNSDDKRVSAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLD 303

Query: 295 VEGK----------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             GK                  +    + GE  V NAL AA +   +G+    +   L K
Sbjct: 304 SFGKAVFTTTERSNSSNLMNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSK 363

Query: 339 LHVVPGRFEFVGT---NSRGGRIYVD-YAHTSNSLEMIL--------KNIRTITSGRIIV 386
           +  +      + T   N     +  D +    +S++  +         +    +    I 
Sbjct: 364 VSHISPHRMQLSTVSKNDEKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIA 423

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           V G   +    +  +   I   +A+ ++
Sbjct: 424 VLGSMLELGSNEDELHTNIGEYVANSSV 451


>gi|241760221|ref|ZP_04758317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
 gi|241319332|gb|EER55797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
          Length = 438

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 147/392 (37%), Gaps = 26/392 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
             + ++ + +DSR IQ G +F A+ G + D H F+   +A GA A+VVS         A 
Sbjct: 4   ENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGA- 62

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  L V +T   L   A          +  +TG+SGK++V   +  + +       
Sbjct: 63  -------LKVGDTLVALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLR---HRFG 112

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-L 204
                +T  +F           I L   L  L+ +    V     +H  +   L  I   
Sbjct: 113 DEAVLATAGNFNNH--------IGLPLTLLKLNEKHRYAVIEMGMNHFGELSLLTRIAGP 164

Query: 205 IAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 N  R H+            AK  ++E LL  +  A+I  +DA        A  A
Sbjct: 165 NVALVNNALRAHVGCGFDGVADIAKAKSEIYEGLL-SDGIALIPCEDANIATF--EASTA 221

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                + G     IH + +       +  +    +    + P+PG   V+NA+ AA L +
Sbjct: 222 QLNAQTFGVASGDIHAENIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNAVAAAALAL 281

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A G+  A V + L+    + GR   +    +G  +  D Y    +S+++ +  +  + + 
Sbjct: 282 AAGLSLAEVSDGLKNFSNIKGRLN-IKQGIKGATLIDDTYNANPDSMKVAIDVLAAMPAP 340

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           RI V+   G   +     +  ++     D  I
Sbjct: 341 RIFVMGDMGELGEDEAAAMHAEVGAYARDKGI 372


>gi|260593466|ref|ZP_05858924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
 gi|260534582|gb|EEX17199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
          Length = 440

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 154/426 (36%), Gaps = 42/426 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF+A+ G   DG+ F   A+ +G    +V              ++  I
Sbjct: 16  VTTDSRYCPEGSIFIALKGALFDGNKFAKAALDKGCSYAIVDEK------EYADPTDKRI 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++        A     +    ++ +TGT+GK++    +  +         +     T
Sbjct: 70  ILVEDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISTVLAE------KYKVHHT 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +++  D  +           L   S   +  + + AS  G  +  +  ++   G  TN+
Sbjct: 124 EANYNNDVGVP-------RTLLGIGSDDEIAVIEMGASHPGDIKKLVTYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   ++   +   +A   E+   A     R+++ G 
Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDYLKAHDALLFLNESNADLTEMA--AQREFDRIITYGQ 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVE--------GKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                   KV +     +                 ++    L G + + N L A  + + 
Sbjct: 235 DDTADVQGKVISCAPFLKFEWQSSSLNKQQPANTIYEVQTHLIGSYNLDNMLAAITIGLH 294

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+    +   LE       R +   T +    I   Y    +S+   ++N R +     
Sbjct: 295 FGVTPQQINHALESYIPHNNRSQLTET-AHNKLIVDAYNANPSSMAAAIENFRLMEVEHK 353

Query: 385 IVVFGCGGDRDQGKRPIMGKI-----ALDLADIAIVTD-------DNPRSEDPEKIRAEI 432
           + + G   +          K+     A  L ++ +V +       D  + ++ ++++AEI
Sbjct: 354 MAILGDMRELGAASAEEHQKVVELLKAAGLTNVWLVGEEFLKTNTDFRKFKNVDEVKAEI 413

Query: 433 IHGIPG 438
            H  P 
Sbjct: 414 AHHQPE 419


>gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
 gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
          Length = 462

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 159/462 (34%), Gaps = 31/462 (6%)

Query: 12  PELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           PE +  ++   +   E   ++ +S+DSR I+ G +F+ + G++ DGH ++     +  + 
Sbjct: 4   PEQLTTITHGRLIGPETASVSGISTDSRTIKPGELFIPLRGDRFDGHDYLNGLTERRIQV 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            + + ++          S    + V +T + L   A+    +    ++ VTG++GK++  
Sbjct: 64  SLCNESWLQHQQPPATLS---CIAVRDTLRALGDLAAAFRKRFALTMIGVTGSNGKTTTK 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I  +        G  +                I L + L  L  +    V     
Sbjct: 121 EMLAAILDQVDQGLKTSGNLNN--------------QIGLPQMLFQLKPEHCWAVLEMGM 166

Query: 191 SHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S   +  RL  I     G   N    H+    + +A   AK  L  + +     A++ AD
Sbjct: 167 SEPGEIDRLAEIACPSIGIVLNAFPAHLQSMGSVEAVAQAKGELL-QRIQDGGLAVVNAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPG 308
           D     +     N   R  S G +   +  + V AI    Q   +       +      G
Sbjct: 226 DP---RIASLHQNPSARRTSFGIKRGEVRAEAVQAIGTEGQAFKLVTPKGSIELRLKALG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  +YNAL AA   + + +    + E LE      GRF     ++    I   Y     S
Sbjct: 283 QHNIYNALAAAAGLLEL-VGLETIAEGLEAFVPYTGRFHLETLSNNRLLIDDSYNANPAS 341

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               L  ++ I   R   V           +      +G  A  +AD   +      +++
Sbjct: 342 CAAALATLQGIKGNRRAFVALGDMLELGRDELELHRQLGIQAASVADRLYLLG--SLTKE 399

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                AE        I   +  E  R         D++++ G
Sbjct: 400 TAGAAAEAGLASEAIISATSHEEIARDIHTHAGNGDLILLKG 441


>gi|148657880|ref|YP_001278085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           sp. RS-1]
 gi|148569990|gb|ABQ92135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseiflexus sp. RS-1]
          Length = 490

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 97/487 (19%), Positives = 173/487 (35%), Gaps = 42/487 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +++     E   +    P    +   +E   DSR   +  +FVA+ G + DGH F+
Sbjct: 7   LQLDEVLRGVQAEADRRKPSLPPALMQVAFSEAVIDSRQATSECLFVALRGERVDGHEFL 66

Query: 61  PQAIAQGAEAIVV----------SSAYSLQD------FSATIRSNTPILVVDNTRKFLSL 104
             A A+GA   +V             Y++ D             +  ++ VD+ +  L+ 
Sbjct: 67  ADAAARGARGALVRRDKLSNLSLERPYAVIDPVTGEGLEQATPDSVLLIAVDDPQAALNR 126

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A+   GK+   ++ VTG+ GK+S       + QRS           T+ S     R   
Sbjct: 127 LAAYHRGKYHPVVIGVTGSVGKTSTKEVTASVLQRS---------FRTLKS----PRSYN 173

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                    L   +   V  + +     G   H     +   G  TN+G  H++   + +
Sbjct: 174 SEASLPIVLLKLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVTNVGPSHLERMGSIE 233

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKV 282
           A   AK  L  + LP +  AI+  DD     V   A     R    G             
Sbjct: 234 AIQRAKSEL-PQALPDDGFAILNIDD---LRVRAMAEVTRARPFFYGLDPAADLWADSIE 289

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                     +  +G  F    PL G   V+ AL AA   + +G++   ++  L      
Sbjct: 290 SRGLQGISFRVHYQGDAFYLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGLRD-ESA 348

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKR 399
             R   V   ++   I   Y  +  S+   L  +  +   RI +   +   G   ++  R
Sbjct: 349 QLRLLAVPGVNQTTLIDDTYNASPASMLAALNLLAELEGRRIAILGDMLELGSVEEEAHR 408

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +  ++A ++A   I      R    E ++A +           +  EA   A+  L   
Sbjct: 409 RVGARVA-EVARFLITVGRRARWIADEALQAGMAP--DQVWSVDDNDEAADLAMSCLAPG 465

Query: 460 DVLVVAG 466
           D++++ G
Sbjct: 466 DIVLIKG 472


>gi|255534719|ref|YP_003095090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340915|gb|ACU07028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 427

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 149/435 (34%), Gaps = 44/435 (10%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           + DSR ++   IF A  G+  +       A  +GA A++V          A       I 
Sbjct: 20  TIDSRTLKKDDIFFAFSGDSFNAATLAEDAADKGALAVIVEQK-------AYENPARDIF 72

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V +T  FL   A+    +    ++A+TG++GK++    +  +  +     +  G     
Sbjct: 73  YVPSTLNFLQELATHHRDQLDIPVIALTGSNGKTTTKEIIHAVLAQKYNVQYTSG----- 127

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                +       P+ L   LS  S   +  + + A+     +   +  K   G  TN G
Sbjct: 128 -----NLNNHIGVPLTL---LSVRSHHNMAVIEMGANHQKEIEMLCEIAKPTYGYITNFG 179

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           + H++     +     K  ++  L       ++  +DA    +          V++ G  
Sbjct: 180 KAHLEGFGGFEGVIKGKSEMYSYLRANSQTILVNENDA----IQVENTAGYSPVITFGKP 235

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                 ++V   +      + +   D      L G +   N   AA L +  GI    + 
Sbjct: 236 DSDYLFEEVSNQNF-----VGLRFGDQTAHSQLTGSYNFTNLCAAASLGLHFGISFREIK 290

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC--- 390
             +E       R + +  N +   +   Y    +S+E  LKN       + I++      
Sbjct: 291 TAIENYVPTNMRSQILEKNGK-TLVLDTYNANPSSMEESLKNFNRFEGSKTIIIGDMLEL 349

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE----KIRAEIIHGIP-------GF 439
           G + +   R I+        D  +   +N R  +P     K   E+   +          
Sbjct: 350 GNESEAEHRRILDLAGSLAFDAVVTVGENFRRINPGSQSYKSAQELADALKLNPINSQNI 409

Query: 440 IEKGNRIEAIRTAIE 454
           + KG+R  A+   ++
Sbjct: 410 LLKGSRGIALEKILD 424


>gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
 gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
          Length = 466

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 133/402 (33%), Gaps = 30/402 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++          +     +     I  V  DSR +  G +FV + G + DGH F 
Sbjct: 3   MTLSDILAAT-----GAVGDVGERGNPV-IEAVRIDSRAVVPGSLFVCVPGARLDGHHFA 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +GA A++           A +   TP+L+V +T   L   A     +    ++AV
Sbjct: 57  AEAVEKGAAAVLADRPL------AGLPEGTPVLLVRDTVAALGRLARAWRERVGARLVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G++GK++V      I                +   A++ +            L    + 
Sbjct: 111 SGSAGKTTVKELTAAIL-------------GKVGPTAKNYKNFNNRIGLPLSMLEAGEND 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S+ G         +       N+G  H+            K  LF  L P 
Sbjct: 158 ALWVMELGISAPGEMAPLASIAEPDVAVIHNVGPAHLQALGDVAGVAAEKTFLFRSLRP- 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A+   D     +  + A      + + G    +           + +  + ++  + 
Sbjct: 217 GGTALASMDYPELWDAARAAFPGVRGMSTKGQAAPYRAKYLGAISEGRGRFFLKLDDLEL 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + + PL G     N L AA     +G     +   L    +   RF       +G    +
Sbjct: 277 EVVTPLTGGHFAENILAAAAAARILGAGEPEIAAGLATAVMPEQRF---FCRRQGCYTLI 333

Query: 361 DYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           D  + +N L M         T+    +V   G  R+ G    
Sbjct: 334 DDTYNANPLSMRRAIAAAAETAQARPLVLVLGEMREMGAHAE 375


>gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis EO147]
          Length = 468

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 151/407 (37%), Gaps = 31/407 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G   D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +  +  ++      ++            I L   L  L++     V    
Sbjct: 118 KEMIASIFAAAAGADARLATAGNFNN-----------DIGLPLTLLRLTAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETETLARIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDAY+     R    G R++     G        V  + +  ++ I       D      
Sbjct: 226 DDAYASIW--RVAATGNRIVDFALHGAGHDTPAAVTGVLDGSRLAIDTPDGRIDVQLNAL 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YA 363
           GE    NAL +    +A G+  A + + LE    V GR +          G  +  D Y 
Sbjct: 284 GEHNARNALASTAAALAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYN 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
              +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 344 ANPDSMRAAIDVLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|307127880|ref|YP_003879911.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
 gi|306484942|gb|ADM91811.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
          Length = 457

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/483 (17%), Positives = 175/483 (36%), Gaps = 61/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L     +  K  +T  V   +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LGITDLVERKDSLTFKVNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
           I I        ED  ++        P          E  ++ E  ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAG 466
           + G
Sbjct: 437 LKG 439


>gi|302819192|ref|XP_002991267.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
 gi|300140978|gb|EFJ07695.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
          Length = 515

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 148/445 (33%), Gaps = 40/445 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R I  G  F+A+VG   DG+ F+ QA+A G    +          S        
Sbjct: 71  SICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAAGCAGAI--------GRSMPRDWPVG 122

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + V ++   L   A     ++  +++ +TG+ GK++  + V    +  G      G   
Sbjct: 123 FVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTKAMVALALESLGHIHQTQG--- 179

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L   L+  S      + +  +  G         K       N
Sbjct: 180 -------SENNHIGVPLTL---LALPSFSPACVIEMGMNHLGEILELSRICKPSVRVVLN 229

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++   + +    AK  LF +   +    I+ ADD     VM    +    +   G
Sbjct: 230 VGPAHMENLGSLEQVALAKGELFRD-SGRGDVCILNADDPL---VMAMPVSPDAMIRFFG 285

Query: 272 YQG-KFIHLKKVCAIHNKQQVTIS-----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                 + L         Q V  +     V G +  FL   PG     NA  AA +  ++
Sbjct: 286 RSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGSETTFLSC-PGIHLASNACAAACVATSL 344

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRI 384
           G+      E + K   V  R       S    I   Y     S+ + L+ + ++   GR 
Sbjct: 345 GVPLKAASESISKFSPVGMRSRLEAICSDIQLINDAYNANPMSMTVALEILASVECKGRK 404

Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           +V  G     GD  +G      K   +L    I T   P   D       +       ++
Sbjct: 405 VVALGDMLELGDFTRGAHMKAIKCCQELHVDVIGTA-GPAFSDA---LNGLELEKCEVVK 460

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             N           +   DV++V G
Sbjct: 461 CENSAALAEELTARITPGDVVLVKG 485


>gi|281420992|ref|ZP_06251991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
 gi|281404910|gb|EFB35590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
          Length = 433

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 158/437 (36%), Gaps = 35/437 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF+A+ G   DG+ F   A+ +G   ++V      ++           
Sbjct: 16  ITTDSRDCPEGSIFLALKGASFDGNKFADMALEKGCAYVIVDEKEYAKEGEER------Y 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++        A          ++ +TGT+GK++    V  +    G     +     
Sbjct: 70  ILVEDCLTTFKELAREHRRHFDIPVVGITGTNGKTTTKELVSAVL---GEKFNVMFTQGN 126

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            ++            + + K L  LS    +  V + AS  G  +  ++ ++   G  TN
Sbjct: 127 FNN-----------DVGVPKTLFRLSPENEIAVVEMGASHPGDIRKLVEYVEPTCGMITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H+    + +     K  L++ L   ++   I AD+ +  ++ ++      R+++ G
Sbjct: 176 VGRAHLQGFGSFEGVKKTKGELYDYLAANDALVFINADNEHLMQMAEQ--RNINRLITYG 233

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                    +V +     +     E  D+      L G + + N L A  + +   +   
Sbjct: 234 KDENCDVWGEVISCAPFLKFRWRTESFDWHEVQTHLIGSYNIDNMLAAITIGLHFDVKPQ 293

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   LE       R +   T +    +   Y    +S+   ++N R +     + + G 
Sbjct: 294 QIDHALENYIPSNNRSQLEET-AHNKLVVDAYNANPSSMAAAIENFRMMDVPHKMAILGQ 352

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
            G+  +       K+   L              +   +  +    IP    K   +E ++
Sbjct: 353 MGELGEVSHEEHQKVVDQLQ---------TAGLENVWLVGDEFKDIPCSYRKFQNVEEVK 403

Query: 451 TAIEMLNKQD-VLVVAG 466
            A++     D  +++ G
Sbjct: 404 EALKANQPHDHYILIKG 420


>gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
 gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
          Length = 457

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 144/388 (37%), Gaps = 40/388 (10%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
             DSR I AG +FV + G + DGH FI  A   GA   +     + Q          P +
Sbjct: 30  EFDSRLITAGDLFVPLKGAR-DGHDFIETAFENGAVVTLSEKKVANQ----------PYI 78

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +VD+        A+    K   ++ AVTG++GK++    +  +   +  +    G     
Sbjct: 79  LVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAHLLSTTYKTYKTQG----- 133

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNL 212
                       + I L   + ++       V      H  D H L  +        T +
Sbjct: 134 ---------NYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLV 184

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+ + + +      KM++ + + P  S  +  AD      +++       +V+  G 
Sbjct: 185 GEAHLAFFKDRSEIAKGKMQIADGMRP-GSLLLAPADS-----IVEDYLPTDKKVVRFGQ 238

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +   L+    +  K  +T      +     P+ G++   NA++A+ + +  G+    +
Sbjct: 239 GAE---LEITDLVERKDSLTFKANFLEQTLDLPVTGKYNATNAMIASYVALQEGVSEEQI 295

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVF 388
            +  + L +   R E+    + G  I  D Y     ++++IL+    I     G+ I V 
Sbjct: 296 RQAFQNLDLTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVL 354

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVT 416
               +       +  ++ L L+   + T
Sbjct: 355 ADMKELGDQSIQLHNQMILSLSPDVLDT 382


>gi|254882385|ref|ZP_05255095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|319640562|ref|ZP_07995282.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
 gi|254835178|gb|EET15487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|317387839|gb|EFV68698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
          Length = 432

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 138/376 (36%), Gaps = 26/376 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV       D    I      
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRI------ 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G    
Sbjct: 70  LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L       +  + + A+  G  +     ++   G  TN+
Sbjct: 126 ------NLNNHIGVPLTL---LRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L+E L       I    D      + +     C     G 
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRIC----YGM 232

Query: 273 QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           +G+       K+ A           EG+ F+    L G + + NAL A  +     + S 
Sbjct: 233 EGREGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSR 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E LE       R +   T      I   Y     S+   L+N R +     +V+ G 
Sbjct: 293 QICEALEAYVPHNNRSQLTETTDNK-LIVDAYNANPTSMMAALENFRLMNVAHKMVILGD 351

Query: 391 GGDRDQGKRPIMGKIA 406
             +  +       KIA
Sbjct: 352 MKELGETSHEEHQKIA 367


>gi|170696717|ref|ZP_02887832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
 gi|170138380|gb|EDT06593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
          Length = 475

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 145/421 (34%), Gaps = 30/421 (7%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   +      VS+DSR    G +FVAI G++ D H F+    A+   
Sbjct: 11  LREAAALIPGATVIGDDSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLADVAARNVS 70

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +V+              + P L V +TR  L   A     K    ++AVTG++GK++V
Sbjct: 71  AALVAR--------VPGGWSVPALRVADTRVGLGALARGWRRKFSMPLVAVTGSNGKTTV 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            I L   L  L++     V    
Sbjct: 123 KEMIASIFAAAVGVDARLATAGNFNN-----------DIGLPLTLFRLNAAHRLAVVELG 171

Query: 190 SSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 172 MNHPGETSLLAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALTP-DGIAVFPA 230

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+      A        ++    +      V    + + ++I       +    + G
Sbjct: 231 DDAYASIWRVAATGNRIVDFALNTAERTTEAA-VTGTFDGKVLSIQTPEGHTNITLQVLG 289

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
               +NAL A    +A G+    +   LE    V GR +          G  +  D Y  
Sbjct: 290 NHNAHNALAATSAALAAGVSLDAIKRGLESFGAVKGRLQVKHAALGTLAGATVIDDTYNA 349

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPR 421
             +S+   +  + +  S R++V+   G   D G    R I         D      D  R
Sbjct: 350 NPDSMRAAIDVLASHASPRVLVMGDMGEVGDNGPEFHREIGAYAKERGIDALYAMGDASR 409

Query: 422 S 422
            
Sbjct: 410 D 410


>gi|225859425|ref|YP_002740935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
 gi|225721821|gb|ACO17675.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
          Length = 457

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 167/455 (36%), Gaps = 49/455 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + ++ +   DSR I  G +FV + G + DGH FI  A   GA   +            
Sbjct: 21  FADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEV------- 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              SN P ++VD+        AS    K   ++ AVTG++GK++    +  +        
Sbjct: 73  ---SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLST----- 124

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
            +     T  ++         + I L   + ++       V      H  D H L  + +
Sbjct: 125 -RYKTYKTQGNY--------NNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      KM++ +  +   S  +  AD      +++     
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG-MASGSLLLTPADP-----IVEDYLPT 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G   +   L+    +  K  +T      +     P+ G++   NA++A+ + +
Sbjct: 230 DKKVVRFGQGAE---LEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-- 380
             G+    + +  + L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 287 QEGVSEEQIHQAFQGLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPAN 345

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G+ I V     +       +  +I L L+   + T      ED  ++        P  
Sbjct: 346 EGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIF-YGEDIAELAQLASQMFPIG 404

Query: 438 -----GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
                   E  ++ E  ++   E L   D +++ G
Sbjct: 405 HVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439


>gi|323343902|ref|ZP_08084129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
 gi|323095721|gb|EFZ38295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
          Length = 436

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 143/390 (36%), Gaps = 35/390 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++DSR      IF+A+ G   DG+ F   A+ +G    +V      +        ++ 
Sbjct: 16  QITTDSRICPKDSIFIALRGENFDGNKFAETALEKGCAYAIVDEQKYQK------PDDSR 69

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  K     A     +    I+ +TGT+GK++    V  +  +      +     
Sbjct: 70  YILVDNCLKTYQQLAREHRRRFHIPIIGITGTNGKTTTKELVSAVLGK------KYSVLH 123

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           T  +F  D          + K L  LS    +  + + AS  G  +  ++ ++   G  T
Sbjct: 124 TDGNFNNDV--------GVPKTLFRLSEKHQIAVIEMGASHRGDIKTLVEIVEPDYGIIT 175

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--PAIIYADDAYSKEVMKRAHNAGCRVL 268
           N+G+ H+    + +     K  L++ L  K+      I AD+ Y   +     + G  ++
Sbjct: 176 NVGKAHLQGFGSFEGVIRTKGELYDYLRAKQGGNKVFINADNPYLMNI-----SQGLTLI 230

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             G +       K         +         G   +    + G + + N L AA + + 
Sbjct: 231 KYGKRDDCELSVKGEVTGCSPFLDFRWYNTQAGHWNEVHTRMIGAYNIDNMLAAACIGLH 290

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            GI  A + E L K      R +   TN     I   Y     S+   ++N + +     
Sbjct: 291 FGISEADIDEALSKYTPSNNRSQLTVTNDNK-LIVDAYNANPTSMHAAIENFKAMHVSPK 349

Query: 385 IVVFGCGGDRDQGKRPIMGKIA--LDLADI 412
           I + G   +     +    +IA  L  AD 
Sbjct: 350 IAILGDMRELGNASKEEHQRIADELKTADF 379


>gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 457

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 164/473 (34%), Gaps = 40/473 (8%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +++  +        +      +  DSR      +F+AI G   DGH F+P  + +G 
Sbjct: 7   EIKDVLGDIKNLGEGGIDSLNFKNICIDSRTCLKNDLFIAIKGKNFDGHNFLPDVLNKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +++V+      +     +  N P  VV +T             K    ++A+TG+ GK++
Sbjct: 67  KSVVI-----KEGMQKLLPDNFPCWVVSDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTT 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V ++  + G           +S    +N +           L+      V  + + 
Sbjct: 122 TKEMVGEVLNKLGKIK--------LSHANFNNEIGVGLT-----ILATDKEDKVLVLEMG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
               G  ++     K      TN+G  HI    +++    AK  + + L PK    II A
Sbjct: 169 MRGLGQIENLSKYSKPDIAVITNIGTAHIGLLGSKKNITYAKCEISKFLNPK-GVVIIPA 227

Query: 249 DDAYSKEVMKRAHN---AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +D   +E ++           +L++  Q   F     +   +N    TI +E   F+  F
Sbjct: 228 NDLLLEETLREYWKGRVTKVELLNIENQNDSFKKDNNLRGFYNPSNKTILIEENIFEISF 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
                    N L+A  +   +GID         K   V          S    IY + Y 
Sbjct: 288 EGF--HNASNFLLAYAVAKELGIDFESFN----KFDFVSLGGRNKILKSVKTTIYDESYN 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            +  S++  +K +      +  +       G + ++  + I   I     +  +   D  
Sbjct: 342 ASPESVKACIKTLLEKPRNKFFIFGSMQELGEESEKFHKEIFNLINNSDIEKCLFICD-- 399

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
             +  +KI    +     F+   N  +  +   +   K D +++  KG  +  
Sbjct: 400 --KKNKKIYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILI--KGSRSWQ 448


>gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71900698|ref|ZP_00682821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
 gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
          Length = 468

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 144/381 (37%), Gaps = 19/381 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           LI   +   +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V
Sbjct: 8   LIAYWTGGYLHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                          + P +VV +T + L+  AS L       +LA+TG++GK+SV + +
Sbjct: 68  DH--------VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +   S  +            +             ++   +       + A   G
Sbjct: 120 VSILEHAAAQSSTV--------VYASSGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKLG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +  D +        N+   H++   +       K  ++  L P    A+I  DDA++
Sbjct: 172 DIGYLTDIVTPDVALVNNIAPAHLERMGSLLGVARTKGEIYAALRP-GGTAVINMDDAFA 230

Query: 254 KEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               ++   AGC VL  G Q    +    +    +  +  +     +      L G   V
Sbjct: 231 LWFEQQCVPAGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNV 290

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA + +  GI  + +   L     V GR            I   Y     SL++ 
Sbjct: 291 CNALAAAAMALVAGIPLSQIAAGLGLARSVAGRQVAHALPGGAVLIDDSYNANPGSLDVA 350

Query: 373 LKNIRTITSGRIIVVFGCGGD 393
           +  + T  SG   +V G   +
Sbjct: 351 IDTLTT-ASGPGWLVLGDMRE 370


>gi|218258245|ref|ZP_03474647.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225588|gb|EEC98238.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
          Length = 428

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 141/391 (36%), Gaps = 31/391 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +                 
Sbjct: 16  VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYFIGERT-------- 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN    L   A R        I+ +TGT+GK++    +  +        +  G    
Sbjct: 68  ILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEG---- 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L       +  + + AS  G  +  +D  +   G  TN+
Sbjct: 124 ------NLNNHIGVPLTL---LRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++   + +     K  L++ +   +    I  D+ Y KE+       G   ++ G 
Sbjct: 175 GRAHLEGFGSFEGVIKTKGELYDYMRRTKGKIFINQDNKYLKEIAN-----GIEQVTYGS 229

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    V + +         +GK       L G + + NALVA  +     I +  +
Sbjct: 230 DETAFAWGCVVSCNPYLTFEWKQQGKIHTVETHLIGNYNLDNALVAVAVGRFFKIPAERI 289

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF---- 388
              +        R +   T +    I   Y    +S+++ L N  T+      ++     
Sbjct: 290 SRAIAAYEPTNNRSQLKKTENN-ELIIDAYNANPSSMKVALDNFATMPVSPKALILGDMR 348

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             G   D+    ++ +I     D   +  ++
Sbjct: 349 ELGPTSDELHTEVVARIKEGNYDKVFLCGEH 379


>gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
 gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
          Length = 468

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 142/379 (37%), Gaps = 19/379 (5%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           LI   +   +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V
Sbjct: 8   LIAYWTGGYLHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                          + P +VV +T + L+  AS L       +LA+TG++GK+SV + +
Sbjct: 68  DH--------VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +   S  +            +             ++   +       + A   G
Sbjct: 120 VSILEHAAAQSSTV--------VYASSGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +  D +        N+   H++   +       K  ++  L P    A+I  DDA++
Sbjct: 172 DIGYLTDIVTPDVALVNNIAPAHLERMGSLLGVARTKGEIYAALRP-GGTAVINMDDAFA 230

Query: 254 KEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               ++   AGC VL  G Q    +    +    +  +  +     +      L G   V
Sbjct: 231 LWFEQQCVPAGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNV 290

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA + +  GI  + +   L     V GR            I   Y     SL++ 
Sbjct: 291 CNALAAAAMALVAGIPLSQIAAGLGLARSVAGRQVAHALPGGAVLIDDSYNANPGSLDVA 350

Query: 373 LKNIRTITSGRIIVVFGCG 391
           +  +    SG   +V G  
Sbjct: 351 IDTLTA-ASGPGWLVLGDM 368


>gi|330752054|emb|CBL80565.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 139/388 (35%), Gaps = 35/388 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R+I  G +F A+ G   +G+ F  +A+ QGA   VV           T+  +  I
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE---------TMDQDIRI 63

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +  + L   A          +  +TG++GK++    +  +      +    G  + 
Sbjct: 64  IQVSDVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNN 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
                          + +   +  +S      +    ++H L+   L  I +   G  TN
Sbjct: 124 --------------HVGVPLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITN 169

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            G+ H++     +     K  L++     ++  ++  DD+     ++            G
Sbjct: 170 YGKAHMEGFGGLEGIIKGKSELYDFAFEHQTQVMVNFDDS-----LQSEKTKDHNRFGFG 224

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +    +  K          + +  +G        L G F   N   A  L +   +    
Sbjct: 225 HSKGGVTWKSTSDNEFAS-IQLETKGNSTSIKSQLSGHFNESNLAAATTLGLHFDVPLKD 283

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIV--VF 388
           +   LE       R E+  T      +   Y     S+ + ++N  +  TSG +I+  ++
Sbjct: 284 IKTALEAYVPSMNRVEWRKTQYN-AVLMDAYNANPTSMSLSIQNFGKWHTSGLMILGDMY 342

Query: 389 GCGGDRDQGKRPIMGK-IALDLADIAIV 415
             G         I+ + I+LD+A   I+
Sbjct: 343 ELGKASKVEHEAIVREVISLDMAQNCIL 370


>gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
 gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
          Length = 448

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 137/418 (32%), Gaps = 36/418 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +L   D  +  +   I      +  +N V +D+R I +G +FVA+ G + DGH +I Q
Sbjct: 2   LINLTLSDIAKACDGELI----GEDCSLNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQ 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA  +V      + +           + V +T     + A  +       ++ +TG
Sbjct: 58  AVQEGAVGVVSDRVVDVPN----------YVKVFDTTLAYGVIARLIRDAFKGPVVCITG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++V  ++ Q                 +     +       P  L   L   +   V
Sbjct: 108 SNGKTTVKDWLAQSL-----------TDKNVLKTRANLNNQIGVPQTL---LELDADNDV 153

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +    S  G                TN    H +     +     K  L     P  S
Sbjct: 154 AVIEAGTSFTGEIPLLAKVAFPDIVVLTNATGSHFEGLGGIEDIAKEKGALISGSSPNAS 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              + +DD Y       A +   +V S G+ +   ++   +             +G    
Sbjct: 214 VV-LNSDDEYFDYWCGLAGDR--QVYSFGFTESADLYASDIELGAESSLAMFHYDGMAQL 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                 G+ Q+ N +      + IGID     + L    +V GR E + T +    I   
Sbjct: 271 VTIAGAGKHQIANGMAVVLAMLIIGIDFKQAADKLASPVLVSGRLERLKTKNGALLINDC 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  +  S+E  +  +   +     ++ G     G  RD     +            I 
Sbjct: 331 YNASPKSVEAAIDVLSIQSVEETWLILGGLAELGAQRDDIHHSLGIYAKNKGISCLIC 388


>gi|224282666|ref|ZP_03645988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313139824|ref|ZP_07802017.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313132334|gb|EFR49951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/520 (20%), Positives = 192/520 (36%), Gaps = 48/520 (9%)

Query: 8   YKDFPELINQ----LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +    E+I      L    ++  +   + ++ D+R ++ G + +   G +     ++   
Sbjct: 15  HGLLREIIRADRWTLDAHDIEGADTAFSAITYDTRDVREGTL-LCCKG-RFK-AEYLHDI 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G  A V  + +S +       +  P L+V++ RK +SL ++  YG+ P++ L V G 
Sbjct: 72  DERGLAAYVADTDFSAE-------TGAPGLIVNDARKAMSLLSAEFYGR-PQDELTVVGI 123

Query: 124 SGKSSV---ASFVQQICQRSGLSSFQIGP---TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +G       A F Q +          +              ++ LTTP  +   + +   
Sbjct: 124 TGTKGKTTTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREA 183

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
           +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K ++  
Sbjct: 184 ADNGMKYLVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVR 243

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIH---NK 288
                    ++ A   ++  + + A +AG  V +     G          V A       
Sbjct: 244 N----SRALVLGAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEH 299

Query: 289 QQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--R 345
               I+ +G D  +F   L G+F   NA  A  +  A GID          +  V    R
Sbjct: 300 SAYRIAADGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402
            E            VDYAH   S+  +L  +         RI +V G  G++   +R  +
Sbjct: 360 MEQFHDPQSNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEI 419

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI----E 454
            + A    D  I T ++  +E    I  E+   I           +R  A+  AI     
Sbjct: 420 VEAAQHRIDSFIFTAEDTDTEPFIDICTEMQRYITVPGIASTVISDRPTAVTNAIYDARA 479

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             ++ +++++ GKG E      N       D  I+  +  
Sbjct: 480 HADRFNIILIIGKGDERWIKDHNKHVPFEGDDRIVERMFA 519


>gi|294677019|ref|YP_003577634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
 gi|294475839|gb|ADE85227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
          Length = 483

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/464 (18%), Positives = 165/464 (35%), Gaps = 57/464 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S D+R I+ G +FVA+   + DGH F+  A+ +GA   +VS                
Sbjct: 25  TGLSIDTRSIRPGEMFVALKDVR-DGHDFVADALKKGAACALVSR------IPEGCSEED 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++AVTG+ GK+S    ++ +    G         
Sbjct: 78  PLLLVPDVLRALEDLGRAGRARARAQVIAVTGSVGKTSTKEMLRAVLSAQGRVHA----- 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ + +      + V  +  G     +   +  A   
Sbjct: 133 ---------AEASFNNHWGVPITLARMPAEADFAVIEVGMNHPGEISPLVKMARPHAAMI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++  +T       K  +F+ L P    A++      +  ++  A     +V++
Sbjct: 184 TTVAAAHLEAFETLDDIAREKAAIFDGLEP-GGTAVVPTGLESTPILLAAAKARAGQVVT 242

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   G    L       +   V     GK   F    PG+    NAL    L  A+G D
Sbjct: 243 FGPAPGSDYRLVSAKIAGDATIVQAEQAGKPMLFKVMTPGKHFANNALGVLALARAVGAD 302

Query: 329 SALVLEHLEKLHVVPGR------FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR---- 377
            A+    +       GR      +  +   ++   ++ D +     S+E  L+ +     
Sbjct: 303 PAVAALDIGLWAPPAGRGTRERIWLDLIDEAQSFDLFDDAFNANPASMEAGLEVLAGQVP 362

Query: 378 -----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
                 +  GR + + G   +   G+  +   IA   A ++I         D   +    
Sbjct: 363 RDGVGRVKRGRRVAILGDMLELGAGEARLHAAIAELPAMVSI---------DIVHLAGPR 413

Query: 433 IHGIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVAG-KG 468
           +  +   + +  R E + TA ++        +  DV++V G KG
Sbjct: 414 MRALHEALPREKRGEWVETARDLAARAPHLVDAGDVVLVKGSKG 457


>gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 465

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 142/379 (37%), Gaps = 19/379 (5%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           LI   +   +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V
Sbjct: 5   LIAYWTGGYLHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLV 64

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                          + P +VV +T + L+  AS L       +LA+TG++GK+SV + +
Sbjct: 65  DH--------VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +   S  +            +             ++   +       + A   G
Sbjct: 117 VSILEHAAAQSSTV--------VYASSGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLG 168

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +  D +        N+   H++   +       K  ++  L P    A+I  DDA++
Sbjct: 169 DIGYLTDIVTPDVALVNNIAPAHLERMGSLLGVARTKGEIYAALRP-GGTAVINMDDAFA 227

Query: 254 KEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               ++   AGC VL  G Q    +    +    +  +  +     +      L G   V
Sbjct: 228 LWFEQQCVPAGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNV 287

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA + +  GI  + +   L     V GR            I   Y     SL++ 
Sbjct: 288 CNALAAAAMALVAGIPLSQIAAGLGLARSVAGRQVAHALPGGAVLIDDSYNANPGSLDVA 347

Query: 373 LKNIRTITSGRIIVVFGCG 391
           +  +    SG   +V G  
Sbjct: 348 IDTLTA-ASGPGWLVLGDM 365


>gi|297243800|ref|ZP_06927730.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
 gi|296888221|gb|EFH26963.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
          Length = 536

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 169/508 (33%), Gaps = 71/508 (13%)

Query: 5   DLIYKDFPELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           D++  +  E+ N +     ++     +   N V SDSR I+ G +FVAIVG   DGH ++
Sbjct: 26  DMMPMNISEIANTVHGEMHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-----RLYGKHPE 115
             A   GA   +V              +N   +VV+N+ + L L A      R     P 
Sbjct: 86  KNAEKSGAVVAIVEHVVE--------GTNLNQIVVNNSVEALGLLAKHNLELRRNLNKPF 137

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+ GK++    ++ +      +   +G  +              +  +L     
Sbjct: 138 TIIGITGSVGKTTTKDMLKALLSTLDETVAPVGSFNNNIGLPLTALQVGSNTRFLIAE-- 195

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +              +G  H+    + +    AK  +  
Sbjct: 196 -----------MGANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVR 244

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVT 292
            LLP    A++ +DD     +     N   R    G   K   L+             + 
Sbjct: 245 GLLPH-GIAVLNSDDKRVSAMSCLVENKHVRW--FGRNAKNGLLESASKDDYQLSASNIK 301

Query: 293 ISVEGK----------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           +   GK                  +    + GE  V NAL AA +   +G+    +   L
Sbjct: 302 LDSFGKAVFTITERSNSSDLVNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVL 361

Query: 337 EKLHVVPGRFEFVGT---NSRGGRIYVD-YAHTSNSLEMIL--------KNIRTITSGRI 384
            K+  +      + T   N     +  D +    +S++  +         +    +    
Sbjct: 362 SKVSHISPHRMQLSTVSKNDEKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFR 421

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSE-DPEKIRAEIIHGIPGFIE 441
           I V G   +    +  +   I   +A+ ++  V     +++ D +K+   I  G      
Sbjct: 422 IAVLGSMLELGSNEDELHTNIGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWN 481

Query: 442 KG--NRIEAIRTAIEMLNKQDVL--VVA 465
               +  EA+          D++  +VA
Sbjct: 482 NKLLSSHEAVYFVHSADEADDIVWKLVA 509


>gi|154494091|ref|ZP_02033411.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
 gi|154086351|gb|EDN85396.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
          Length = 428

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 144/391 (36%), Gaps = 31/391 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +     D+    R+    
Sbjct: 16  VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNP----DYFIGERT---- 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN    L   A R        I+ +TGT+GK++    +  +                
Sbjct: 68  ILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLS----------TKYN 117

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +     +       P+ L   L       +  + + AS  G  +  +D  +   G  TN+
Sbjct: 118 LLYTEGNLNNHIGVPLTL---LRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++   + +     K  L++ +   +    I  D+ Y KE+       G   ++ G 
Sbjct: 175 GRAHLEGFGSFEGVIKTKGELYDYMRRTKGKIFINQDNKYLKEIAN-----GIEQVTYGS 229

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    V + +         +GK       L G + + NALVA  +     I +  +
Sbjct: 230 DETAFAWGCVVSCNPYLTFEWRQQGKIHTVETHLIGSYNLDNALVAVAVGRFFKIPAERI 289

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF---- 388
              +        R +   T +    I   Y    +S+++ L N  T+      ++     
Sbjct: 290 SRAITAYEPTNNRSQLKKTENN-ELIIDAYNANPSSMKVALDNFATMPVSPKALILGDMR 348

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             G   D+    ++ +I     D   +  ++
Sbjct: 349 ELGPTSDELHTEVVARIKEGNYDKVFLCGEH 379


>gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
 gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
          Length = 536

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 147/448 (32%), Gaps = 60/448 (13%)

Query: 5   DLIYKDFPELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           D++     E+   +     ++     +   N V SDSR I+ G +FVAIVG   DGH ++
Sbjct: 26  DMMPMSISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-----RLYGKHPE 115
             A   GA   +V              +N   +VV+N+ + L L A      R     P 
Sbjct: 86  KNAEKSGAVVAIVEHVVE--------GTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPF 137

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+ GK++    ++ +    G +   +G  +              +  +L     
Sbjct: 138 TIIGITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAE-- 195

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +              +G  H+    + +    AK  +  
Sbjct: 196 -----------MGANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVR 244

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
            LLP    A++ +DD     +     N   R      +        K     +   + + 
Sbjct: 245 GLLPH-GIAVLNSDDKRVSAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLD 303

Query: 295 VEGK----------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             GK                  +    + GE  V NAL AA +   +G+    +   L K
Sbjct: 304 SFGKAVFTTTERSNSSDLMNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSK 363

Query: 339 LHVVPGRFEFVGT---NSRGGRIYVD-YAHTSNSLEMIL--------KNIRTITSGRIIV 386
           +  +      + T   N     +  D +    +S++  +         +    +    I 
Sbjct: 364 VSHISPHRMQLSTVSKNDEKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIA 423

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           V G   +    +  +   I   +A+ ++
Sbjct: 424 VLGSMLELGSNEDELHTNIGEYVANSSV 451


>gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11H7]
          Length = 457

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 164/471 (34%), Gaps = 38/471 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           DL   +  +++  +        +      +S DSR      +F+AI G   DGH F+P+ 
Sbjct: 2   DLSLLELKDVLGDIKNLGEGEIDSLNFKNISIDSRTCFENDLFIAIKGKNFDGHSFLPEV 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +G +++V+      +     +  N P  VV++T +        +  K    ++A+TG+
Sbjct: 62  LNKGVKSVVI-----KKGMQKLLPDNFPCWVVNDTLEAFQKLTLLIRKKLSIPVVAITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    V ++ ++ G                  +             L+      V 
Sbjct: 117 VGKTTTKEMVGEVLKKLGK-------------IKLSHSNFNNEIGVGLTILAADKEDKVL 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +     G  ++     +      TN+G  HI   ++++    AK  + + L PK   
Sbjct: 164 VLEMGMRGLGQIENLSKHSEPDIAVITNIGTAHIGLLRSKKNITYAKCEISKFLNPK-GV 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            II A+D   +E ++         + +      +G F     +   ++    TI +E   
Sbjct: 223 VIIPANDLLLEETLREYWKGRVIKVELLNIKDQKGSFKKNDNLRGFYDPLNETILIEENT 282

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F   F         N L A  +   +GID         K   V          S    IY
Sbjct: 283 FKISFEGF--HNASNFLFAYAVAKELGIDFESFN----KFDFVSLGGRNKILKSVKTTIY 336

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
            + Y  +  S+   +KN+      +  +       G + ++  + I   I     +    
Sbjct: 337 DESYNASPESVNACIKNLIGKPRNKFFIFGSMQELGEESEKYHKEIFNLINNSDIEKCFF 396

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             D    +  EKI  + +     F+   N  +  +   +   K D +++ G
Sbjct: 397 ICD----KKSEKIYTKYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILIKG 443


>gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis]
          Length = 446

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 146/439 (33%), Gaps = 38/439 (8%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR  + G +FVA  G   DGH +  +A   GA A++ S   SL           P +V
Sbjct: 30  LDSRQAEPGGLFVAFAGEHADGHDYAERAGRAGAVAVLGSRPTSL-----------PTVV 78

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V++ R  L   A+ +  +  +   ++ VTG+ GK+     +  +   +G +    G  + 
Sbjct: 79  VEDVRTALQTLAAHVVARLRDGLTVVGVTGSQGKTGTKDLLAAVLSGAGPTVATTGSLNN 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                        +  +L              + + A   G        +        N+
Sbjct: 139 ELGVPLTMLRAQAATRFL-------------VLEMGARHEGDIAELTGLVAPDIAVVLNV 185

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG- 271
           G  H+    ++ A   AK  L + L+P    A++ ADD     V   +      VL+ G 
Sbjct: 186 GVAHLGEFGSRAAIARAKGELVQGLVP-GGTAVLNADDP---RVASMSVLTDGPVLTFGR 241

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   L  V     +   T+           PL G  Q  NA  AA   +A G+   
Sbjct: 242 TDPADVQVLDVVLDRLGRPSCTLRTVDTSARLALPLVGAHQALNASAAAAAALAAGVPLD 301

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           L    L    + P R E          +   Y    +S    L  +  I  GR I V G 
Sbjct: 302 LATTALTTASLSPWRMELRDLACGATLLNDSYNANPDSTRAALDALSAIEGGRRIAVLGE 361

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
             +   G       +    A  A         E    +      G    +  GN   A+ 
Sbjct: 362 MLELGDGSEAEHRAVGAYAAARA--DVVVAVGEAARPLADG--AGERAVVLAGNDA-AVD 416

Query: 451 TAIEMLNKQDVLVV-AGKG 468
              + L   DV++V A +G
Sbjct: 417 WLRDHLAAGDVVLVKASRG 435


>gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis C6786]
          Length = 468

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 31/407 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G   D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +  +  ++      ++            I L   L  L++     V    
Sbjct: 118 KEMIASIFAAAAGADARLATAGNFNN-----------DIGLPLTLLRLTAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETETLARIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DDAY+     R    G R++     G        V    +  ++ I       D      
Sbjct: 226 DDAYASIW--RVAATGNRIVDFALHGAGHDTPAAVTGALDGSRLAIDTPDGRIDVQLNAL 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YA 363
           GE    NAL +     A G+  A + + LE    V GR +          G  +  D Y 
Sbjct: 284 GEHNARNALASTAAAFAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYN 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
              +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 344 ANPDSMRAAIDVLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 457

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 164/450 (36%), Gaps = 57/450 (12%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
             DSR I  G +FV + G + DGH FI  A   GA A +     +          N P +
Sbjct: 30  EFDSRLIATGDLFVPLKGAR-DGHDFIETAFENGAVATLSEKEIA----------NHPYI 78

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +VD+        A+    K   ++ AVTG++GK++    +  +   +  +    G     
Sbjct: 79  LVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAHLLSTTYKTYKTQG----- 133

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNL 212
                       + I L   + ++  +    V      H  D H L  +        T +
Sbjct: 134 ---------NYNNEIGLPYTVLHMPEETEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLV 184

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+ + + +      KM++ + + P     ++   D     +++    A  +V+  G 
Sbjct: 185 GEAHLAFFKDRSEIAQGKMQIADGMAP--GSLLLAPADP----IVEAYLPADKKVVRFGQ 238

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +   L+    +  K  +T      +     P+ G++   NA++A+ + +  G+    +
Sbjct: 239 GAE---LEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQI 295

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVF 388
            +  + L +   R E+    + G  I  D Y     ++++IL+    I     G+ I V 
Sbjct: 296 RQAFQDLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVL 354

Query: 389 GCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHGIP------- 437
               +       +  ++ L L+    DI I        ED  ++        P       
Sbjct: 355 ADMKELGDQSIQLHNQMILSLSPDVLDIVIF-----YGEDIAQLAQLASQMFPIGHVYYF 409

Query: 438 GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
              E  ++ E  ++   E L   D +++ G
Sbjct: 410 KKTEDQDQFEDLVKQVKESLGAYDQILLKG 439


>gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 452

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 153/398 (38%), Gaps = 39/398 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +L  Q  +  +   +  I  VS +S  +    +FVAIV    DGH FIP AIA GA
Sbjct: 3   KSLKQLATQAGLEYI-GEDVSIQTVSINSNEVNQDALFVAIV-ANRDGHEFIPSAIANGA 60

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +A++VS    +         N P +V +NT K L   A          I+++TG+ GK++
Sbjct: 61  KALLVSKKQDI---------NIPQVVCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKTT 111

Query: 129 VASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           V   +      +++    G  +  +G   T+    QD                       
Sbjct: 112 VKEMIVTLLGGKKVHFTQGNFNNYLGVPMTVLETPQDVDFAVIET--------------- 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                  S  G  +   + I+      TN+G  H++  +T       K  L + L PK+ 
Sbjct: 157 -----GTSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKAL-PKDG 210

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+  DD        +  +      S+  Q   I +           V I +  K++ +
Sbjct: 211 VCIVNLDDERIPAYADKL-DCKKITCSMSNQDADIIILDYQVTPELYDVKIRIFNKEYSY 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G+  + N+++A    +A G++    L++ + +    GRF     N +   +   Y
Sbjct: 270 QLPNIGKHNLSNSMLAIASVVAAGLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTY 329

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             ++ +++  + ++      ++I +       D+G+  
Sbjct: 330 NASAGAVQAAIADLAEFDGKKVIAITSMRELGDEGENY 367


>gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
 gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
          Length = 452

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 143/410 (34%), Gaps = 42/410 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I K   E+ N +        +  +KI+ V  DSR +    ++V I+G + DGH F  Q 
Sbjct: 1   MIVKTIHEITNMMHATLHGDIDDTKKIHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQT 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA   +    +           + P+++VD+T + +   +     +    ++ VTG+
Sbjct: 61  IEDGALISLWQKDH-------VPYPDFPVILVDDTLRAMQDLSKAYLDELHPLVIGVTGS 113

Query: 124 SGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +GK+S    +  I        +  G  + +IG   TI  F +D                 
Sbjct: 114 NGKTSCKDMLYSIFSQEKKTQKTQGNRNSEIGLPLTIFDFDEDIE--------------- 158

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                V  + +   + G         +      T++G  H++    +     AK  + E 
Sbjct: 159 -----VAILEMGMENKGEITQLTSIAQPDISVITSIGSAHMENLGGKLQIAQAKCEILEG 213

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +    +   +    +EV+         V+S G  G       +     K+ +     
Sbjct: 214 -TKENGLFLYNYESKEIQEVLCTLDTENKNVVSFGQGGDVSITSDIEYD--KEGIVFKCN 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D        G+FQ  NAL    +  A  +    +L  L+ L +   R + +    +  
Sbjct: 271 ILDAPVHLRAFGDFQAMNALPCIYIAKACHLKEESILNGLKNLEMTKMRTQLISV--KNA 328

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            I  D Y     S +  +  +  + + + I +     D    ++ +   +
Sbjct: 329 YILDDTYKSNPESAKAAIDTLMELPANKHIAIISDMLDLGSEEKQLHYDV 378


>gi|322375679|ref|ZP_08050191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
 gi|321279387|gb|EFX56428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
          Length = 457

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 158/455 (34%), Gaps = 49/455 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + ++ +   DSR I  G +FV + G + DGH FI  A   GA   +            
Sbjct: 21  FADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEVE------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P ++VD+        A+    K   ++ AVTG++GK++    +  +   +  + 
Sbjct: 74  ----GYPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAHLLSTTYKTY 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G  +                  L              V      H  D H L  +  
Sbjct: 130 KTQGNYNNEIGLPYTVLHMPDDTEKL--------------VLEMGQDHLGDIHLLSKLAH 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      KM++ + + P +S  +  AD      +++     
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAP-DSLLLAPADP-----IVEDYLPT 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G       L+    I  K  +T            P+ G++   NA++AA + +
Sbjct: 230 DKKVVRFGQGAD---LEVTDLIERKDSLTFKANFLGQALDLPVTGKYNATNAMIAAYVAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI--- 379
             G+    + +  + L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 287 QEGVSEEQIHQAFQNLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAILAN 345

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G+ I V     +       +  ++ L L+   + T      ED  ++        P  
Sbjct: 346 EGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIF-YGEDIAELAQLASQMFPIG 404

Query: 438 ------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    ++    + ++   E L   D +++ G
Sbjct: 405 HVFYFKKTADEDQFEDLVKQVKESLGANDQILLKG 439


>gi|288939890|ref|YP_003442130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
 gi|288895262|gb|ADC61098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
          Length = 452

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 160/451 (35%), Gaps = 39/451 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +   + V +DSR    G +FVA+ G + DGH +          A   ++       
Sbjct: 15  LHGSDVAFSSVGTDSRADCTGQLFVALRGERFDGHEY---------VAAAQAAGAVAAMV 65

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              +  + P  VVD+TR  L   A+    + P  ++A+TG++GK++V   V  I  ++G 
Sbjct: 66  DQPLPLDLPQWVVDDTRLGLGRLAAAWRDRFPGRVIAITGSNGKTTVKEMVAAILSQAGR 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +                I +   L     +    + + A+ HG   +  +  
Sbjct: 126 VRATRGNLNN--------------DIGMPLTLLSARDEDFLVLEMGANHHGEIGYMTEIA 171

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN GR H++   + +    AK  +   L P++   ++  D  Y     + A  
Sbjct: 172 RPEVALITNAGRAHLEGFGSVEGVARAKGEIARGL-PEDGVFVVSGDSPYLGLWRELAEG 230

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                 ++          +   +           T  V  +++     L G+  V NAL 
Sbjct: 231 RRMLTFALDGAADLTAGTESIGVEWGAAGFRTTFTARVADENWPLALSLAGQHNVRNALA 290

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A+   +A+G+D A +   LE L  V GR         G  +  D Y    +S+   +  +
Sbjct: 291 ASAGALALGLDRAAIAAGLESLTPVKGRLYPRLCREIG--VIDDSYNANPDSIAAAIAVL 348

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             +T GR  +V G  G+       +  +I        +      R      + AE     
Sbjct: 349 AGLT-GRRTLVLGDLGELGADAARLHAEIGEQAHAAGL-----DRLFTVGTLSAEASRAF 402

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             G     ++   +      L   D ++V G
Sbjct: 403 GAGAEHFADQDALLNRLKADLKPGDRVLVKG 433


>gi|261337516|ref|ZP_05965400.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
 gi|270277915|gb|EFA23769.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
          Length = 535

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/401 (18%), Positives = 130/401 (32%), Gaps = 51/401 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V  DSR    G +FVAI G   DGH ++      GA A +V             +S+ 
Sbjct: 43  TNVVIDSRQAHEGSLFVAINGEHADGHAYVATLGDSGALAAIVDHEIP--------QSSV 94

Query: 91  PILVVDNTRKFLSLFASRLYGK-----------HPENILAVTGTSGKSSVASFVQQICQR 139
             LVVD+T K L   A     +            P +I+ +TG+ GK++    +  +   
Sbjct: 95  VQLVVDDTVKALGELARHNLAQRRAMAAAHPDAAPFSIVGITGSVGKTTTKDLLHALLGE 154

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +   +G  +             PS  +L                + A+  G   +  
Sbjct: 155 LGETVAPVGSFNNELGLPLTALQVGPSSRFLIAE-------------MGANHLGEIANLT 201

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                       +G  H+    + +    AK  +    +P     I+ ADD +   +   
Sbjct: 202 HIAPPDVAVVLKVGNAHLGEFGSVERIAQAKSEIVRGEVP-GGMTILNADDPHVAAMDAI 260

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTIS-VEGKDFDFLFPLPGEFQV 312
           A      V   G +    H   V A H +         T+   +G        +PG   V
Sbjct: 261 APGL---VRWFGLEHATEHDDYVTADHVRMDDDGHAVFTLRQSDGAYQQVRLGIPGAHNV 317

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVD-YAHTSN 367
            NAL A  +    G+    +++ LE++  +      +    R       +  D +    +
Sbjct: 318 MNALAATAVAQYFGLPLRHIVQVLEQVRAISPHRMAISIVRRPERPEFTLIDDSFNANPD 377

Query: 368 SLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKI 405
           S+   +  I    +      I V G   +    +  +   I
Sbjct: 378 SMRAGIDGIAAFNAAEPMLRIAVLGAMLELGPDETALHEAI 418


>gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare]
          Length = 415

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 132/387 (34%), Gaps = 32/387 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I    +F+A+ G+  + + F  +A+ +GA  +++       D          +
Sbjct: 16  VCTDTRKISPNSLFIALKGDNYNANEFAQEALNKGALFVIIDDKKYYTD-------ENKM 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V+N+ + L   A+    +    I+A+TG++GK++    +  +  +   +   IG    
Sbjct: 69  LLVNNSLQALQELANYHRNQLGLPIIALTGSNGKTTTKELINVVLSKKYKTIATIG---- 124

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   LS      +  V + A+     +      +   G  TN 
Sbjct: 125 ------NLNNHIGVPLTL---LSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNF 175

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  ++  L      A +  DD+     ++          +   
Sbjct: 176 GKAHLEGFGGIEGVIKGKSEMYTYLKTHNKTAFVNLDDS-----IQEEKTQHINRYTFST 230

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    +  I     V I   G   +    L G +   N  VA  +     +    +
Sbjct: 231 DNNKKANIIINKIEANPFVKIKYNG--IEIQSNLIGIYNSNNINVAISIGTYFNVSEQDI 288

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + +E       R + +   +    I   Y    +S+   + N + +  G  I   G   
Sbjct: 289 KQAIENYIPANNRSQLIEKGNNKI-ILDAYNANPSSMAAAISNFQQL-DGSKIAFLGDMF 346

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDN 419
           +  +       KI   + +    T  N
Sbjct: 347 ELGEESLTEHKKIIESILNH---TSIN 370


>gi|324995316|gb|EGC27228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK678]
          Length = 456

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 178/479 (37%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +  +    S    +    ++VD+        A     K   ++LAV
Sbjct: 56  AT----------AFAQGAAATLSERPVAEGAYILVDDVLTAFQRLAQYYLQKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+  A + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYTALQEGVSEAAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKG 439


>gi|150003104|ref|YP_001297848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294775869|ref|ZP_06741368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
 gi|149931528|gb|ABR38226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294450238|gb|EFG18739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
          Length = 432

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 137/376 (36%), Gaps = 26/376 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV       D    I      
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRI------ 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G    
Sbjct: 70  LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L       +  + + A+  G  +     ++   G  TN+
Sbjct: 126 ------NLNNHIGVPLTL---LRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L+E L       I    D      + +     C     G 
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRIC----YGM 232

Query: 273 QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           +G        K+ A           EG+ F+    L G + + NAL A  +     + S 
Sbjct: 233 EGGEGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSR 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E LE       R +   T      I   Y     S+   L+N R +     +V+ G 
Sbjct: 293 QICEALEAYVPHNNRSQLTETTDNK-LIVDAYNANPTSMMAALENFRLMNVAHKMVILGD 351

Query: 391 GGDRDQGKRPIMGKIA 406
             +  +       KIA
Sbjct: 352 MKELGETSHEEHQKIA 367


>gi|111018105|ref|YP_701077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
 gi|110817635|gb|ABG92919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
          Length = 504

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 93/499 (18%), Positives = 160/499 (32%), Gaps = 67/499 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E++    +  +     ++   V  DSR + AG +F+A+ G   DGH     A+
Sbjct: 4   MTLARIAEIVGG-ELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGAHVDGHDHAASAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATI-RSNTPILVVDNTRKFLSLFASRLYGKHPE-------- 115
             G  A++ +    +     T   S+ P        K ++L                   
Sbjct: 63  EAGVVAVLAARPVGVPAIVVTPTPSDVP-------SKAMALEHDTDGSGAAVLAALAKLA 115

Query: 116 ------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
                        ++ VTG++GK+S    +  + +  G      G  +            
Sbjct: 116 RASVDGLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWT---- 171

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                    AL   +  G   + + A   G      +      G   N+G  H+    ++
Sbjct: 172 ---------ALRADADTGFLVLEMSARGRGHIASLANIAPPKIGVVLNVGTAHLGEFGSR 222

Query: 224 QAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HL 279
            A   AK  L E L    +   AI+ ADD     V   A     RV+ VG          
Sbjct: 223 DAIAAAKGELAESLPSADEGGVAILNADDPL---VAAMAPRTSARVVLVGRSESAHVRAT 279

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
             V     + + T++           + GE QV NAL AA + +  G D   + + L   
Sbjct: 280 DIVLDEKARARFTLTAPTGSVAVELAVHGEHQVGNALAAAAVALECGADLEQIAQALSGA 339

Query: 340 HVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGG 392
             V  R   V     G  +  D Y    +S+   LK + ++       + R   V G   
Sbjct: 340 AAVSARRMDVRDRPDGVTVVNDSYNANPDSMRAALKALVSMARSGRGAARRSWAVLGEMA 399

Query: 393 DRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNR 445
           +           I      LD++ + IV    P     +     ++ G      I   + 
Sbjct: 400 ELGPESVVEHDAIGRFAVRLDVSRLIIVGTGRPARAMHQ---GAVMEGSWGEESILVPDI 456

Query: 446 IEAIRTAIEMLNKQDVLVV 464
             A+      L   D+++V
Sbjct: 457 AGAVALLEAELAPGDLVLV 475


>gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
 gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
          Length = 487

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 90/471 (19%), Positives = 162/471 (34%), Gaps = 40/471 (8%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P  +   +   +    R +   S D+R ++ G +F AI G   DGH F+  A+ +GA A 
Sbjct: 9   PAALEAATGGRLIGAPRAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALDKGAGAA 68

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV+ A + +          P    D     +         +    I+AVTG+ GK+    
Sbjct: 69  VVAEARAKEFEGVGSVLAVPGEGDDPVLDAMRRLGLAARARTEAAIVAVTGSVGKTGTKE 128

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++ +    G +   +               +  +   +   L+ +       V     +
Sbjct: 129 ALRHVLSAQGATHASV--------------ASYNNHWGVPLTLTRMPEATRFGVFEIGMN 174

Query: 192 HG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           HG         ++      T +   HI++ ++  A  +AK  +F  L P    A+I  D+
Sbjct: 175 HGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKP-GGVAVINRDN 233

Query: 251 AYSKEVMKRAHNAGC-RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + ++  A  +   RV++ G +    +   ++    +   V  +V G    +    PG
Sbjct: 234 PNYERLLAHAQASRAGRVITFGEHAAADVRAHRILTRPDVSVVDATVMGVPVTYQLGTPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHT 365
                N+L       A+G D A     L  L    GR E        G    VD  Y   
Sbjct: 294 RHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNAN 353

Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDD 418
             S+   L  +  I     GR I V G   +     +   R +   +A +  D+      
Sbjct: 354 PASIRAALATLAGIDTGVKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVF---- 409

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAI-EMLNKQDVLVVAG 466
                    + A +   +P  +        E +  A+   L   D ++V G
Sbjct: 410 -----AVGPLMAHLFEALPMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKG 455


>gi|91977864|ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684320|gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 479

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 149/395 (37%), Gaps = 27/395 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A       A   
Sbjct: 26  RDVFGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALNAGAALAVVERAQR-----AKFA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++ P+LVVD+    L         +    I+AVTG+ GK+S    ++ +    G +   +
Sbjct: 81  ADAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTSTKEALRGVLGAQGETHASV 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                              P+ LA+  + +         +  +  G  +  +  ++    
Sbjct: 141 ----------ASFNNHWGVPLSLARCPADVRYA---VFEIGMNHAGEIEPLVKMVRPHLV 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-R 266
             T +   H+++    +A  +AK  +F  L+P    A++  D+A  K +   A  AG  R
Sbjct: 188 IITTVEPVHLEFFSGIEAIADAKAEIFAGLVP-GGTAVLNRDNAMFKRLTDSARKAGVGR 246

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           V+S G        L  V    +   V  ++ G+D  +   +PG     N+L        +
Sbjct: 247 VVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAAAETV 306

Query: 326 GIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI--- 379
           G D AL    L  +    GR     +        +  + Y     S+   L  +  +   
Sbjct: 307 GADLALAALALSHVQPAAGRGVRRALEFGQSEATLIDESYNANPASMVAALGVLGQVPVG 366

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             GR IVV G   +       +   +A  + + AI
Sbjct: 367 PQGRRIVVLGDMLELGPAGPELHRDLAESVRNNAI 401


>gi|237708647|ref|ZP_04539128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|265755303|ref|ZP_06090073.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
 gi|229457347|gb|EEO63068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|263234445|gb|EEZ20035.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
          Length = 432

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 137/376 (36%), Gaps = 26/376 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV       D    I      
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRI------ 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G    
Sbjct: 70  LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L       +  + + A+  G  +     ++   G  TN+
Sbjct: 126 ------NLNNHIGVPLTL---LRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L+E L       I    D      + +     C     G 
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRIC----YGM 232

Query: 273 QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           +G        K+ A           EG+ F+    L G + + NAL A  +     + S 
Sbjct: 233 EGGEGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSR 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E LE       R +   T      I   Y     S+   L+N R +     +V+ G 
Sbjct: 293 QICEALEAYVPHNNRSQLTETTDNK-LIVDAYNANPTSMMAALENFRLMNVAHKMVILGD 351

Query: 391 GGDRDQGKRPIMGKIA 406
             +  +       KIA
Sbjct: 352 MKELGETSHEEHQKIA 367


>gi|237739352|ref|ZP_04569833.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
 gi|229422960|gb|EEO38007.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
          Length = 609

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 158/412 (38%), Gaps = 46/412 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 173 LKDFSEVLKREKLNELIFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T  ++  I+ V +T   +   A++   K    ++ +TG+
Sbjct: 229 LDKGASLVIADN---------TDIADERIVKVADTIATMQDLATKYRNKLDIQVIGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +  +            T  ++                 L+    +   
Sbjct: 280 NGKTSTKDIVYSLLSKKAK------TLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + + 
Sbjct: 327 VLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVNKENT- 385

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y  ++          V  +G+      + +     +K     +++GK+++  
Sbjct: 386 -FVCGDDVYLAKL---------DVNKIGFNEDNNFIIESYEFSDKGS-KFTLDGKEYEM- 433

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   IG+    + E L+ + +   RF+ +        I   Y 
Sbjct: 434 -SLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMRFQEIRV-GEDIYINDAYN 491

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  S++  +  +  I +    I + G   +  + +     ++   L D  I
Sbjct: 492 ASPTSMKAAIDTLNEIYNDKYKIAILGDMLELGEDEVKYHVEVLNYLLDKKI 543


>gi|301794651|emb|CBW37102.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV104]
          Length = 457

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/479 (17%), Positives = 176/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEVAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGVR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A   GA A +     +          N P ++VD+        A+    K   ++ AV
Sbjct: 56  ERAFENGAAATLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  I 
Sbjct: 263 QVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGVQSVQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      ED  ++        P          E  ++ E  ++   E L   D +++ G
Sbjct: 382 TVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439


>gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
 gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
          Length = 454

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 165/451 (36%), Gaps = 36/451 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++       +  I  VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V 
Sbjct: 9   IADITGGERIGNDLSIESVSTDTRSIEQGALFVALVGERFDAHNFCQQAVESGAGALLVQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              ++      +          +++  L   A+ ++       +A+TG+ GK++V   V 
Sbjct: 69  KRVNVNVPQVVVG---------DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q  G   F      T  +F  D  +           L          + + A+  G 
Sbjct: 120 SILQLKGKVLF------TAGNFNNDIGVP-------LTLLRSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            ++    +K       N+   H++   +      AK  +++ L      AI+  D     
Sbjct: 167 IEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGL-AAGGIAIVNLDSNGGA 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQ 311
           +  +   +      S      + +   +      +    + I+   ++ +    + G+  
Sbjct: 226 KWDEVLADKNVITFSQSNADAYFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + + +G     +   L+ L+ V GR E    + +   I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALKMGATLEEIRSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  +      R +++       ++     R +    A    +  +    +       K+
Sbjct: 346 AVDLLAAFQGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD------AKV 399

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +E+  GI  F      I+ I+  ++    +
Sbjct: 400 ISELCDGI-HFETHQEMIDYIKQHLDQAVPE 429


>gi|237650676|ref|ZP_04524928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822434|ref|ZP_04598279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|332074005|gb|EGI84483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 457

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 159/428 (37%), Gaps = 48/428 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDN 419
             I   +N
Sbjct: 382 TVIFYGEN 389


>gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
 gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
          Length = 475

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 153/420 (36%), Gaps = 28/420 (6%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +S   +   E      VS+DSR    G +FVAI G++ D H F+P   A+   
Sbjct: 11  LREAAALISGATVIGDEYVTFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVT 70

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++++                P L V +TR  L   A     K    ++AVTG++GK++V
Sbjct: 71  AVLITR--------TPQDWTVPALKVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTV 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +  +  ++   +T  +F  D       P+ L +  +   +  +  V +  
Sbjct: 123 KEMIASIFAAAVGADARL---ATAGNFNND----IGLPLTLFRLHA---AHQLAVVELGM 172

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G         +       N  R+H ++  T +A       +   L P E  A+  AD
Sbjct: 173 NHPGETLELAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALTP-EGVAVFPAD 231

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           DAY+      A  +     ++    + I    V        ++I       +    + G+
Sbjct: 232 DAYASIWRVAATGSRIMDFALN-SAERITEAAVKGTFAGNVLSIDTPEGQIEVTLQVLGD 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVD-YAHT 365
              +NAL A    +A G+    +   LE    V GR +    V     G  +  D Y   
Sbjct: 291 HNAHNALAATSAALAAGVSLDAIKRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNAN 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
            +S+   +  + +  + R++V+   G   D G    R I         D      D  R 
Sbjct: 351 PDSMRAAIDVLASRAAPRVLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRD 410


>gi|192361367|ref|YP_001983389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
 gi|190687532|gb|ACE85210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
          Length = 463

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/471 (17%), Positives = 159/471 (33%), Gaps = 42/471 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L Y    + +       ++  +     VS+D+R + AG +F+A+ G + D H F+ Q
Sbjct: 7   LSSLAYFMLSQKLPNALKPQLKGGDAMFTRVSTDTRTLDAGDLFIALRGERFDAHDFLAQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A A+   A+VV                 P LVV ++   L   A+         ++A+TG
Sbjct: 67  AEARQPCAMVVEK--------FNPAIQLPQLVVADSTLALGQVAALNRSLFTGPLVAITG 118

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V + V  I    G +    G          +       P+ L   L        
Sbjct: 119 SSGKTTVKTLVASILGECGETLATRG----------NLNNHIGVPLTL---LELEERHQF 165

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS      +     K       N+   HI+   +     NAK  ++  L+    
Sbjct: 166 AVIEMGASGPSEIAYACSLAKPQVAMINNVMPAHIEGFGSIAGVANAKSEIYGGLV-TGG 224

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DDA++ + +++        +S+         + +          + +  +    
Sbjct: 225 IAVVNIDDAFAPQWIQQLAGKKTLTVSLANPDANCRAEAIEYASEHLAFDLLIHRQRLRI 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
           +    GE  V NAL+AA    A+G     +   L +   V GR            I  D 
Sbjct: 285 ILNAQGEHSVRNALMAAACAYALGASMEQIQRGLARFAPVAGRMSRQ-RGIHNALIIDDS 343

Query: 362 YAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIA----IV 415
           Y     S+   +  +       +++  +   G    +    +         +      ++
Sbjct: 344 YNANPGSVRAAIDVLAQAEDSILVLGDLAELGETATEQHAALGDYAKQKHINRLFTLGVL 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           T             +    G   F E   R + +   I +L     ++V G
Sbjct: 404 T---------ANTSSHFGEGAQHFTE---RNQLLAALIPLLTSGTTVLVKG 442


>gi|332799095|ref|YP_004460594.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332696830|gb|AEE91287.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 468

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/430 (20%), Positives = 153/430 (35%), Gaps = 49/430 (11%)

Query: 51  GNKEDGHLFIPQAIAQ--GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFA 106
           G +     FI    +   GA+ +VVSSA      ++   I SN P++   +    L    
Sbjct: 50  GARV----FIGHNASNVEGADIVVVSSAIPKANPEYIRAIESNIPVIHRADMLSLLMT-- 103

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                  P+  +A+TG  GK++  S +  I +++G       PT  I     D       
Sbjct: 104 -------PKKGIAITGAHGKTTTTSMISLIMEKNGFD-----PTVIIGGELND----IGG 147

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L K    ++    +  S               +       TN+  DH+DY++   + 
Sbjct: 148 NATLGKGEYLVAEADESDGSFM------------KLHPHIAVITNIENDHMDYYKNMNSM 195

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             A  + F + + K+   I   D+ + +E++K   N     + + Y   F+  K V    
Sbjct: 196 KKA-FKKFIDNVNKDGFIIFGNDNKHVQELVKE-TNKEYYTVGINYPSDFM-AKNVKMNG 252

Query: 287 NKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                 +    K        +PG   + NA  A  +   IGID   ++E ++    V  R
Sbjct: 253 LITHFDVCFREKLLGKVELHVPGLHNILNATTAIAVGNRIGIDMEGMIEAIKTFRGVQRR 312

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           F+ + ++ RG ++  DYAH    ++  L+  R     +I  +F                 
Sbjct: 313 FQII-SDIRGIKVIDDYAHHPTEIKATLRAARNCNPKKIYAIFQPHRYTRTQLLAEEFGA 371

Query: 406 ALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           A   AD  I+T      E P K      I   +       +   N+ +     ++     
Sbjct: 372 AFIDADEVIITSIYSAGEQPIKGVSSALIINSLKRNEKNVVFIENKEDIADYILDRAMPG 431

Query: 460 DVLVVAGKGH 469
           D ++  G G 
Sbjct: 432 DYILTIGAGD 441


>gi|297742512|emb|CBI34661.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 140/290 (48%), Gaps = 26/290 (8%)

Query: 228 NAKMRLFEELL-PKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAI 285
           NAK +LF  ++ P     I+  DD  +   + +   +      ++  +   +H  K    
Sbjct: 36  NAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFELS 95

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             + QV +       +    L G   +YN L A  + IA+G     ++  +E++  VPGR
Sbjct: 96  LFETQVLVQTPKGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGR 155

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E +      G + VDYAHT ++L  +L ++R + + RII VFGC G+ D+GKRPIM KI
Sbjct: 156 CELIDEEQAFG-VIVDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTKI 214

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-------------- 451
           A D +D+ I+T DNP++EDP  I  +++ G+   +    +  A                 
Sbjct: 215 ATDKSDVVILTSDNPKNEDPLDILDDMLAGVGWTMHDYLKYGANDYYPPLPNGHRLFLHD 274

Query: 452 --------AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                   A+ M  + D++VVAGKGHET  I  + +K+   D +  RE L
Sbjct: 275 IRRVAVRAAVAMGEEGDIVVVAGKGHETYQIEGD-KKEFFDDREECREAL 323


>gi|114570632|ref|YP_757312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
 gi|114341094|gb|ABI66374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
          Length = 474

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 174/454 (38%), Gaps = 49/454 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            ++ +S D+R +Q G +FVA+   + DGH F+  A+ +GA A +V    +  +       
Sbjct: 30  TVSGISIDTRTLQPGDLFVALQDAR-DGHDFVAAAMEKGASACLVERGDTGVE------- 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P L+V +  + L    +    +     +AVTG+ GK+SV   +  + + SG + + + 
Sbjct: 82  --PALMVKDALEGLRALGAAARDRSDAIRVAVTGSVGKTSVKEALAAVFRSSGPAHWSV- 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                         +  +   +   L+ +    G     +  +  G  +     ++    
Sbjct: 139 -------------KSYNNHWGVPLTLARMPRDTGRAVFELGMNHAGEIRDLSSLVRPHVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +   H+++  + +A  +AK  +F+ L  ++  AI  +DD  ++ + + A H+    
Sbjct: 186 LITRIAPAHLEHLGSVEAIADAKSEIFDGL-EQDGVAIYPSDDPLAERIARHARHSCAAF 244

Query: 267 VLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +L  G      I +++     +  +   +V G    F     G    +NA          
Sbjct: 245 LLDFGTSASAAIRIEEFETGLDGSRGVANVLGVRAPFRLAATGAHWAWNAGAIFAAAAGA 304

Query: 326 GIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-----T 378
           G+D+  V E L  +   PGR     +     G    +D A+ +N + M            
Sbjct: 305 GLDARDVAEALSDVGAEPGRGRAARIALPDGGAFTLLDDAYNANPVSMAAAIAALGAADP 364

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI---AIVTDDNPRSEDPEKIRAEIIHG 435
              GR I V G   +    +  +  ++A  LA     +++T          +    +   
Sbjct: 365 GPDGRRIAVLGDMLELGPDEDRLHAELADHLAAAGVDSVLT--------CGRRMKHLHDA 416

Query: 436 IPGFIEKGNRIEA---IRTAIEMLNKQDVLVVAG 466
           +P  +  G   +A   +     ++   DV+++ G
Sbjct: 417 LPKTVRAGYAQDAAGGLEQVKSLVRSGDVVLIKG 450


>gi|332072838|gb|EGI83319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 457

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/483 (18%), Positives = 174/483 (36%), Gaps = 61/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++      
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQI------ 205

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A      A +  +++       +V+  G   +   L     +  K  +T  V   +
Sbjct: 206 ADGMASGSLLLAPAAPIVEDYLPTDKKVVRFGQGAE---LGITDLVERKDSLTFKVNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
           I I        ED  ++        P          E  ++ E  ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAG 466
           + G
Sbjct: 437 LKG 439


>gi|330752619|emb|CBL87563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 427

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 135/384 (35%), Gaps = 30/384 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +DSR I+   IF ++ G+  +G+ F   AI  GA   V+      ++         
Sbjct: 14  SGVVTDSRKIKNNCIFFSLQGSNFNGNQFAKSAIENGAMYAVIDEEKYFENKEN------ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + VDN+   L   A+    K    I+ +TG++GK++    +  + +            
Sbjct: 68  -YIQVDNSLATLQQLANFHRKKVKTKIIGITGSNGKTTTKELINSVLKT------HFKTY 120

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T  +      +           L    +     + + A+  G  +      +   G  T
Sbjct: 121 CTKGNLNNHIGVP-------LSLLEISENTEFAVIEMGANHIGEIELLSKIAEPNYGYIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++   +++     K  L+E L          +DD   K ++    +   +    
Sbjct: 174 NFGKAHLEGFGSEEGVIKGKSELYEFLTESSGFIFYNSDDEKQKHIL----SNYNKKFGF 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +        +  +   +   I VE  +  F   L G + + N + A  + I +G+   
Sbjct: 230 GKEAGD-----LNYLVKAENPNIVVEVNNKTFKSTLFGNYNIPNVISAISIGIFLGVPVE 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            V   +        R + +  NS    I   Y    +S+ + +K  +       +++ G 
Sbjct: 285 KVKNGISDYISSNNRSQILKINSNN-VILDAYNANPSSMLLAIKAFQNAELENKVLILGD 343

Query: 391 GGDRDQGKRPIMGKIALDLADIAI 414
             +  + +     +I     ++ I
Sbjct: 344 MFELGRDENKFHQEIVDYCNNLDI 367


>gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
 gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
          Length = 436

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 143/392 (36%), Gaps = 26/392 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
             + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VVS         A 
Sbjct: 4   ENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGGA- 62

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  L VD+T   L   A          +  +TG+ GK++V   +  + +R      
Sbjct: 63  -------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRR---RFG 112

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLDGIKL 204
               ++T  +F           I L   L  L+ +     + +  +  G         K 
Sbjct: 113 DDAVSATAGNFNNH--------IGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKP 164

Query: 205 IAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            A    N  R H+            AK  ++  L   +  A+I  +DA     + +    
Sbjct: 165 DAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGL-CSDGMALIPQEDANMA--VFKTATF 221

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                + G     +  + +       +  +    +    + P+PG   V+NA  AA L +
Sbjct: 222 NLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAALAL 281

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A G+    V E L+    + GR   V    +G  +  D Y    +S++  +  +  + + 
Sbjct: 282 AAGLSLNDVAEGLQGFSNIKGRLN-VKAGIKGATLIDDTYNANPDSMKAAVDVLARMPAP 340

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           RI V+   G   +     +  ++     D  I
Sbjct: 341 RIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 372


>gi|258509534|ref|YP_003172285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
 gi|257149461|emb|CAR88434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 462

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 152/412 (36%), Gaps = 38/412 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+      +    V+ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKMT------LAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENI 117
           FIP        A   + A  + +    + +  P LVV +    +   A      K    +
Sbjct: 54  FIPA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKV 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++GK++       I         Q     T  ++  +  +           LS  
Sbjct: 108 VAITGSNGKTTTKDMTAAILAT------QYHVVKTPDNYNNEIGVPM-------TILSME 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V  + +     G         +      T +G  HI++ +T+    +AKM + + L
Sbjct: 155 PNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGL 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
             ++   I   D+     ++ RA        + G   +       +    N  + T+  +
Sbjct: 215 -KEDGTFIFNGDEPL---LVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVE-Q 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  F  P+ GE+ V NAL A  +     +    + + L    V   R +++     G 
Sbjct: 270 WPELTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALVHFQVTANRTQWL-IGDVGE 328

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +I  D Y     +++ ++ +     T+GR I V G   +  +  R +   +A
Sbjct: 329 QILSDVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGEQSRALHAGLA 380


>gi|167753175|ref|ZP_02425302.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
 gi|167659489|gb|EDS03619.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
          Length = 447

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 129/390 (33%), Gaps = 51/390 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+   +F A+ G   DG+ F   A+ +GA   VV                  +
Sbjct: 42  ISTDSRRIEPDSVFFALRGASFDGNRFAADALEKGAAYAVVDDPSLPNTRPDKADR---L 98

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+  + L   A     +    ILA+TG++GK++    V ++           G    
Sbjct: 99  IVVDDALQTLQALAREHRRELGLPILAITGSNGKTTTKELVSRVLAEKYEVYATRG---- 154

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L+         V + AS+ G         +   G  TN+
Sbjct: 155 ------NLNNHIGVPLTL---LAMTRDVEFGIVEMGASACGEIALLCSIAEPNYGIVTNI 205

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++     +     K  L++ L        + A+D     +                
Sbjct: 206 GRAHLEGFGGPEGVRRGKGELYDWLARTGGRVFVPANDPVLMSMAAERETLAAECY---- 261

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                             V   +EG           ++  +N   A  +    G+D   +
Sbjct: 262 -----------PTTLADGVEHHLEG-----------DYNRFNVAAAVAVGRYFGVDDERI 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-----ITSGRIIV- 386
              +        R + + T  +   I   Y    +S++  L N R       T   +I+ 
Sbjct: 300 RYAVGSYRPDNHRSQKIRT-GQNTLILDCYNANPSSMQASLVNFRQEPLEGCTRKILILG 358

Query: 387 -VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +   G   D   R I+  +A ++ D  I+
Sbjct: 359 DMLELGDWSDAEHRHII-SLAAEIPDARIL 387


>gi|94991840|ref|YP_599939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94545348|gb|ABF35395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 353

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 149/367 (40%), Gaps = 34/367 (9%)

Query: 2   KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ KD  F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      +T+       ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             + G+TH+ +E SS      R+ G+    G F N+  DHI    H T + YF  K  L 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E         +I +   +   +  +  +          +  F        I   Q  +  
Sbjct: 234 EN----SRAVVINSGMDHFSFLADQVADQ---------EHVFYGPLSDNQITTSQAFSFE 280

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+    +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +
Sbjct: 281 AKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTN 339

Query: 354 RGGRIYV 360
               + +
Sbjct: 340 HAKVLLI 346


>gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 119/334 (35%), Gaps = 25/334 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL+  L    +   +     VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 3   FRELVVPLDARLVGG-DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVG 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSV 129
            +V              +  P LVV +TRK L+   +          + AVTG+SGK++V
Sbjct: 62  ALVEREVQ--------GAALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTV 113

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G      G  +                      L          + + A
Sbjct: 114 KEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAVIELGA 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G   + +   K      TN G  H+           AK  + E L      A++  +
Sbjct: 161 SRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGL-DAGGTAVLNLE 219

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D       KRA N      ++      ++  ++           I+    +      L G
Sbjct: 220 DKAFPIWRKRAGNRNVLTFALTDSAADVYASELSRDARGCPGFIINSPLGNARVQLNLLG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              V NAL AA    A+G+    ++  L  +  V
Sbjct: 280 THNVSNALAAAAAGCAMGVPLEGIVTGLNNVQPV 313


>gi|15903557|ref|NP_359107.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116515757|ref|YP_816939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
 gi|15459176|gb|AAL00318.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116076333|gb|ABJ54053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
          Length = 457

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/483 (17%), Positives = 175/483 (36%), Gaps = 61/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +     S          N P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEVS----------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPIDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
           I I        ED  ++        P          E  ++ E  ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAG 466
           + G
Sbjct: 437 LKG 439


>gi|259650801|dbj|BAI42963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 463

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 152/412 (36%), Gaps = 38/412 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+      +    V+ DSR ++ G +FV + G + DGH 
Sbjct: 2   MKMT------LAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHE 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENI 117
           FIP        A   + A  + +    + +  P LVV +    +   A      K    +
Sbjct: 55  FIPA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKV 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++GK++       I         Q     T  ++  +  +           LS  
Sbjct: 109 VAITGSNGKTTTKDMTAAILAT------QYHVVKTPDNYNNEIGVPM-------TILSME 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V  + +     G         +      T +G  HI++ +T+    +AKM + + L
Sbjct: 156 PNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGL 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
             ++   I   D+     ++ RA        + G   +       +    N  + T+  +
Sbjct: 216 -KEDGTFIFNGDEPL---LVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVE-Q 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  F  P+ GE+ V NAL A  +     +    + + L    V   R +++     G 
Sbjct: 271 WPELTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALVHFQVTANRTQWL-IGDVGE 329

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +I  D Y     +++ ++ +     T+GR I V G   +  +  R +   +A
Sbjct: 330 QILSDVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGEQSRALHAGLA 381


>gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
 gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
          Length = 463

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/443 (22%), Positives = 168/443 (37%), Gaps = 32/443 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA+ G   DGH F+ QA AQGA   +VS A            +
Sbjct: 24  VSGVAFDSREVTQGDLFVAMKGEATDGHRFVDQAFAQGAAGAIVSDAV-----------D 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V ++   L         +    ++ VTG+ GK+     +     R+         
Sbjct: 73  HPHIRVADSAAALQALGIASRRRMGGKVIGVTGSVGKTGTKEALYLALDRAAPGQAHRSV 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGS 208
            S              + + +  +L+ +       +     +H  +   L   ++  A  
Sbjct: 133 KS------------YNNHVGVPLSLARMPRDSAYGIFEMGMNHAGELSALTHQVRPHAAI 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +   HI++  T+     AK  +FE L P  + AII  D  +   +  +A     R+L
Sbjct: 181 VTAIAPAHIEFFGTEAKIAEAKAEIFEGLEP-GAAAIIPYDSPHVATLYNKAERHAARIL 239

Query: 269 SVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           + G   Q     L+ V A +    VT  +   +  F    PG+  V NAL       A+G
Sbjct: 240 TFGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSNALAVLAAVEAVG 299

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVD--YAHTSNSLEMILKNIRTITSGR 383
            D A     L ++  +PGR E       GG  + +D  Y     S+   LK +    + R
Sbjct: 300 GDLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSMAATLKQLGREHADR 359

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            I V G   +       +   +A  LAD AI       +E      A+ + G   +    
Sbjct: 360 RIAVLGGMRELGSASADLHAGLAKPLADGAIDFAVLVGAEMAP--LADALEGTMAYAHVP 417

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +   AI    + +   D ++V G
Sbjct: 418 DAASAIPLIKKEMRAGDAILVKG 440


>gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
 gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
          Length = 470

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 86/421 (20%), Positives = 144/421 (34%), Gaps = 30/421 (7%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   +      +S+DSR    G +FVAI G++ D H F+P   A+   
Sbjct: 6   LREAAALIPGSTVLGDDSVAFERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVT 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A + S              N P L V +TR  L   A     K    ++AVTG++GK++V
Sbjct: 66  AALASR--------TPQDWNVPTLQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +  +  ++      ++            I L   L  L +     V    
Sbjct: 118 KEMIASIFAAAVGADARLATAGNFNN-----------DIGLPLTLFRLHAAHQLAVVELG 166

Query: 190 SSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P+   A+  A
Sbjct: 167 MNHPGETSDLAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQ-GIAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+      A        ++    +      V        ++I       +    + G
Sbjct: 226 DDAYASIWRVAATGNRIMDFALN-SAERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVLG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVD-YAH 364
           +   +NAL A    +A G+    +   LE    V GR +    V     G  +  D Y  
Sbjct: 285 DHNAHNALAATSAALAAGVSLDAIRRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPR 421
             +S+   +  +    + R++V+   G   D G    R I         D      D  R
Sbjct: 345 NPDSMRAAIDVLAPRPAPRVLVMGDMGEVGDNGPAFHREIGAYARERGIDALYAMGDASR 404

Query: 422 S 422
            
Sbjct: 405 D 405


>gi|294783655|ref|ZP_06748979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294480533|gb|EFG28310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 609

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 158/412 (38%), Gaps = 46/412 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 173 LKDFSEVLKREKLNELLFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T  ++  I+ V +T   +   A++   K    ++ +TG+
Sbjct: 229 LDKGASLVIADN---------TDIADERIVKVADTIATMQDLATKYRNKLDIQVIGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +  +            T  ++                 L+    +   
Sbjct: 280 NGKTSTKDIVYSLLSKKAK------TLKTEGNYNNHIG-------LPYTILNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + + 
Sbjct: 327 VLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVNKENT- 385

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y  ++          V  +G+  +  + +      + +    +++GK+++  
Sbjct: 386 -FVCGDDVYLAKL---------DVNKIGF-NEDNNFRIESYEFSDKGSKFTLDGKEYEM- 433

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   IG+    + E L+ + +   RF+ +        I   Y 
Sbjct: 434 -SLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMRFQEIRV-GEDIYINDAYN 491

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  S++  +  +  I      I + G   +  + +     ++   L D  I
Sbjct: 492 ASPTSMKAAIDTLNEIYDDKYKIAILGDMLELGEDEVKYHVEVLNYLLDKKI 543


>gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
 gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
          Length = 461

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 93/460 (20%), Positives = 162/460 (35%), Gaps = 35/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        +      +  +S D+R +  G +F+A+ G+  DGH  I  A+ +GA A++
Sbjct: 9   ELETATGGTFLGNAPVSVTGISIDTRSLAPGDLFIALKGDNSDGHAHIATALEKGAAAVL 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             SA  L D          IL+V +T   L   A     +    ++AVTG+ GK++    
Sbjct: 69  AHSAEGLTDP--------RILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGKTTTKEM 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++     SGL+                   +  +   +   L+ L  +    +S    +H
Sbjct: 121 LRLCLAPSGLTHA--------------AEASYNNHWGVPLTLARLPREAAFCISEIGMNH 166

Query: 193 -GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G        ++      T +G  H+ +  +  A    K  +   L P    AI+  D  
Sbjct: 167 PGEILPLAKMVQPDVAVITTIGSAHLGHMGSLDAIAAEKASIITAL-PAGGIAIMPDDAH 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +      A  A   +   G   +   HL  +    +     +S+ GK F+   P PG  
Sbjct: 226 GTPFFTAAAVKAQAVLWPCGVNPQSTAHLSHLQTGADGSHFDVSILGKTFNVHLPAPGTH 285

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
              NA+VA   C A+G D A     L       GR            +  + Y  ++ S+
Sbjct: 286 LARNAVVALAACAALGADVAKAAAALAAFRPGKGRGALTKIAGGAITLLDESYNASAASI 345

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L  +R I + R I V G   +  +    +   +       AD+        ++    
Sbjct: 346 RAALDVVRHIPATRRIAVLGDMRELGEFSISEHQALAAPTASAADLVFCCGSYMKT---- 401

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   +     G   +   + A       L K D ++V G
Sbjct: 402 -LFDALPPSKQGAWAESAALLA-PHVCAALRKGDAVLVKG 439


>gi|212691758|ref|ZP_03299886.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|237724084|ref|ZP_04554565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. D4]
 gi|212665659|gb|EEB26231.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|229437544|gb|EEO47621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides dorei
           5_1_36/D4]
          Length = 432

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 137/376 (36%), Gaps = 26/376 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV       D    I      
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRI------ 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G    
Sbjct: 70  LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L       +  + + A+  G  +     ++   G  TN+
Sbjct: 126 ------NLNNHIGVPLTL---LRLTPEHELAVIEMGANHPGEIKALTCIVEPDYGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L+E L       I    D      + +     C     G 
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRIC----YGM 232

Query: 273 QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           +G        K+ A           EG+ F+    L G + + NAL A  +     + S 
Sbjct: 233 EGGEGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSR 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E LE       R +   T      I   Y     S+   L+N R +     +V+ G 
Sbjct: 293 QICEALEAYVPHNNRSQLTETTDNK-LIVDAYNANPTSMMAALENFRLMNVAHKMVILGD 351

Query: 391 GGDRDQGKRPIMGKIA 406
             +  +       KIA
Sbjct: 352 MKELGETSHEEHQKIA 367


>gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
 gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
          Length = 451

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 92/458 (20%), Positives = 161/458 (35%), Gaps = 58/458 (12%)

Query: 11  FPELINQLSIFPMQWRERKI----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +LI  L   P    E  +    + + +D+R I+ G +F+A  G K DGH F+  AIA 
Sbjct: 7   LNQLIEVLLARPFNISEAALAQVSSGIQTDTRIIKPGEVFLAFRGEKFDGHEFVQTAIAN 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +V   Y    F        P+L V NT +           +    ++ VTG+ GK
Sbjct: 67  GAIAAIVDDDYENPGF--------PVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +               T  +  +               L   +      + 
Sbjct: 119 TTTKELIAAVL-------------GTKGNIHKTYGNFNNEIGVPKTLLELNAEHDYAVIE 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G             G  TN+G  HI+   +++A   AK  L  E +PK+S AI+
Sbjct: 166 MAMRGRGQIAELTQIANPTIGVITNVGTAHIELLGSEEAIAEAKCELLAE-MPKDSVAIL 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+     +          VL+ G  G  I    V          + V G       PL
Sbjct: 225 NHDNPLL--MATAGKFWSGEVLTYGLSGGDIQGSLV------DNAIVEVAG--LRLPLPL 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     N L A  +   +GI+ + +   +  +++  GR +     +    +   Y    
Sbjct: 275 PGRHNATNYLAALAVAKVLGIEWSSLQAGVS-VNMPTGRSQRFSLPNDVLILDETYNAAP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRS 422
            ++   L+ +      R I V G   +  +    +  ++   +     D  +V  D    
Sbjct: 334 EAMLAALQLLADTPGKRKIAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVD---G 390

Query: 423 EDPEKIR--------------AEIIHGIPGFIEKGNRI 446
           ED E I               A+++  +  F++ G+R+
Sbjct: 391 EDAEAIAKSAEGIPSECFATHADLVARLTTFVQGGDRV 428


>gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 438

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 159/464 (34%), Gaps = 70/464 (15%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            + ER I ++  DSR    G +FV I+G  +DGH FI  A+ +GA A++ S   +     
Sbjct: 8   PFDERGIEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTELK-- 65

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QI 136
                      V +TR  L         +    ++ VTG+SGK+++ S +        ++
Sbjct: 66  -KKYPEVRFWQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSSERRV 124

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE--ASSHGL 194
            Q +G ++ Q+G   T                     L  L+  G     +E   S  G 
Sbjct: 125 FQTAGNANSQLGVPIT---------------------LFQLARSGAEIAVLELGMSEPGE 163

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   ++     TN+G  HI+  +T++     K+ + +      +   +  +D    
Sbjct: 164 MTRIASIARVDLALITNIGTAHIENLKTKENILLEKLHILDG-AADGAALYLNGEDPLLA 222

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            + +       R+  +G                 ++V +     + +      G     N
Sbjct: 223 SLTEE------RIHDLGIS-------------LGKRVELHFYRAEEEIPLSAAGHHMQQN 263

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  A  + + +G+    VL  L     + GR E + + S  G +   Y  + ++L+  L 
Sbjct: 264 AAAALAVSLDLGLQREGVLRALRGFSGLKGRGEKLLSRSGIGILDDSYNASPDALKASLL 323

Query: 375 NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRA 430
            +      R I +       G+R +      G        D  ++       E    I  
Sbjct: 324 VLSKEKGRRKIALLSDMLELGERSEELHEDCGAFLSSLPIDRVLL-----YGEKSLGILR 378

Query: 431 EIIH-------GIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG 466
            I         G    +   +  E + R  +      D+++  G
Sbjct: 379 GIRREEKRRGDGRQIPVSHFSNAEELYRELLREAAPGDLVLFKG 422


>gi|90423693|ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105707|gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 479

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 144/411 (35%), Gaps = 27/411 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   +   P       I  +S DSR +  G  + AI G   DGH F+  A+  GA   VV
Sbjct: 12  MAEAMRATPSGALPDAIFGISIDSRTLIPGDAYFAIRGEVHDGHAFVAAALNAGAGLAVV 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             A   +       ++ P+L+VD+    L   +     +    ++A+TG+ GK+S    +
Sbjct: 72  ERAQRDK-----FPADAPLLLVDDVLAALVDLSRASRARLGAKVIAITGSVGKTSTKEAL 126

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +    G +   +   +              S  +                 +  +  G
Sbjct: 127 RAVFGAQGETHASVASFNNHWGVPLSLARCPASAKF-------------AVFEIGMNHPG 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             Q  +  ++      T +   H+++  + +A  +AK  +F  L P     ++  D+   
Sbjct: 174 EIQPLVALVRPHVAIITTVEPVHLEFFDSVEAIADAKAEIFTGLEP-NGAVVLNRDNPQF 232

Query: 254 KEVMKRAHNAGC-RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + KRA   G  R++S G  +     L  +        V  +V G+D  +   +PG   
Sbjct: 233 ARLRKRAKAHGISRIVSFGADEKADARLLDIALQPECSAVRAAVFGEDVTYKLGIPGRHM 292

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNS 368
             N+L        +G D AL    L ++    GR        + G    +D  Y     S
Sbjct: 293 AINSLAVLAAAELVGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANPAS 352

Query: 369 LEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +   +  +        GR I V G   +       +   +   +   AI T
Sbjct: 353 MAAAINVLGQAAVGPQGRRIAVLGDMLELGPRGPQLHRGLVEAIKANAIDT 403


>gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 469

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 169/454 (37%), Gaps = 36/454 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+D+R ++ G IF A+ G + D H F+ QA   GA  +VVS        +A + +  
Sbjct: 27  SSVSTDTRRLKKGEIFFALSGERHDAHNFLAQAAGAGAGCLVVSR-------TADLPAGV 79

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L V+NT   L   A+         ++AVTG++GK++       I              
Sbjct: 80  PVLAVENTLAALQALAAFNRKSCGARVVAVTGSTGKTTTKDMTASIL------------- 126

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           ST     +               L    +  +  V +     G         K      T
Sbjct: 127 STRLRTLKSEGNFNNEIGLPLTLLRLDETCEIAVVEMAMRGAGEIDALCRIAKPDCAVIT 186

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H++   T      AK  + E  +P    A++ A+  +   + + A     +V+  
Sbjct: 187 NIGEAHLELLGTVSNIAAAKGEVLEH-IPAGGFALLNAEAPF---IRREAGRCRGKVIYY 242

Query: 271 GYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G      I    +       +  + ++G+  +F  P+PG   V NAL A G+   +G+  
Sbjct: 243 GIDCPADIRAANIRPEGRGSRFEVILDGERREFFLPVPGRHNVMNALAAIGVARELGLTW 302

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV-- 386
             V   L  + +   R E +   ++  RI  D Y     S +  L+ ++ +  GR  V  
Sbjct: 303 EEVARGLAAVTLTGMRLEII--EAKNLRIINDAYNANPASAKAALQVLKEMAGGRRAVAV 360

Query: 387 ---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
              +   G    +G R +    A       +   D         + A +           
Sbjct: 361 LGNMLELGPRAAEGHREVGEAAAGARVSCLVTVGDLAAGIAEGALDAGLPA--ERIFRCA 418

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
           + ++A     E++   DV++V G +G +   IV 
Sbjct: 419 DNMQAAGILEELIRDGDVVLVKGSRGMKMEEIVR 452


>gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 149/459 (32%), Gaps = 40/459 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+AG +FVA+ G   D   F+ +A+A+GA  +V+            +      
Sbjct: 59  ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLVLEQPPVEPVPVPVVLVP--- 115

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
               +T   L   A     +  E  +LA+TG+SGK++V      I QR        G  +
Sbjct: 116 ----DTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQRRQQVLKTRGNLN 171

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +                    L    S     + +  +  G      +         TN
Sbjct: 172 NLVG-------------LPLSLLPVEHSHRFAVLEMGMNRPGEIARMAEIALPDIACITN 218

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+      Q    AK  LF  L P     ++  DD   + +  R            
Sbjct: 219 VQEAHLAGLADVQGVARAKGELFAGL-PAWGKLVVNLDDKRVRRLAARTGQQRI-TYGRT 276

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +                T++++           GE  V NAL AA L  A G+  A 
Sbjct: 277 RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAAALATAAGVSPAE 336

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV----- 386
           +   L        R + +   +    I   Y    +S+   L  +  +   R +V     
Sbjct: 337 IAAGLAAYRPFAKRMQLLPFIAGLKLIDDTYNANPSSMLAALATVHNLRRQRRVVAVLGD 396

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGN 444
           +   G       R I G++A    D  +   +       + + A    G+         +
Sbjct: 397 MLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAH----QVVAAARHRGMAAARTAACAD 452

Query: 445 RIEAIRTAIEMLNKQ-----DVLVVAG-KGHETVHIVTN 477
           + E +     M++       D+++  G +G     I+  
Sbjct: 453 KEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIIDG 491


>gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
 gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
          Length = 457

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 79/405 (19%), Positives = 146/405 (36%), Gaps = 31/405 (7%)

Query: 9   KDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    +I  L    ++  + +  +  V  DSR +  G +++ I G   +GH F+ QAI  
Sbjct: 3   RSIDSVIRMLDADYIENSDIEEMLMGVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDN 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+A++                   +++V++T K L   A     +    ++ +TG++GK
Sbjct: 63  GAKAVLWER------REPNPPKEVTVILVEDTTKALQDLARAYRNQLDMKVIGITGSNGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    V     +            T+ +F  +  +           LS+  +  V  V 
Sbjct: 117 TSTKDIVASFMAQ------HYITQKTMGNFNNEIGVP-------LTLLSFSQNVEVGVVE 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +   + G      + ++      TN+G  H++   + +    AK+ + E L       I 
Sbjct: 164 MGMENLGELSFLTNLVRPDIAIITNVGTAHLENLGSMENIARAKVEIAEGL-RDGGMLIY 222

Query: 247 YADDAYSKEVMKRAHNAGCRVL-SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             D    K+ ++ A  +G   L S G  QG    + +VC         I+    D     
Sbjct: 223 NGDQPLLKDALRAAQLSGGIALRSFGTQQGNDYIVHEVCQQKEGLSFYIN----DVACHL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
            + G+ Q  NA  A     A+ +  A  L+  E +     R E V  +     I  D Y 
Sbjct: 279 DMIGKHQAMNATAAWIAAKALQVCEAEALKGFESIEKTGLRNELVSFDQ--ALILNDSYK 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
               S    L  +        + V G   +  +    I  ++  D
Sbjct: 337 SNPQSALAALDTLEEFDIPYKLAVLGDMLELGETSDQIHYQLGKD 381


>gi|311063990|ref|YP_003970715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
 gi|310866309|gb|ADP35678.1| Mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 519

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 102/520 (19%), Positives = 192/520 (36%), Gaps = 48/520 (9%)

Query: 8   YKDFPELINQ----LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +    E+I      L    ++  +   + ++ D+R ++ G + +   G +     ++   
Sbjct: 15  HGLLREIIRADRWTLDAHDIEGADTAFSAITYDTRDVREGTL-LCCKG-RFK-AEYLHDI 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G  A V  + +S +       +  P L+V++ RK +SL ++  YG+ P++ L V G 
Sbjct: 72  DERGLAAYVADTDFSAE-------TGAPGLIVNDARKAMSLLSAEFYGR-PQDELTVVGI 123

Query: 124 SGKSSV---ASFVQQICQRSGLSSFQIGP---TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +G       A F Q +          +              ++ LTTP  +   + +   
Sbjct: 124 TGTKGKTTTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREA 183

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
           +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K     
Sbjct: 184 ADNGMKYLVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCK----R 239

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-------QGKFIHLKKVCAIHNK 288
           +++      ++ A   ++  + + A +AG  V +               ++    A    
Sbjct: 240 QIVCNSRALVLGAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAAYVTASPANAEH 299

Query: 289 QQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--R 345
               I+  G D  +F   L G+F   NA  A  +  A GID          +  V    R
Sbjct: 300 SAYRIAAGGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGR 359

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402
            E            VDYAH   S+  +L  +         RI +V G  G++   +R  +
Sbjct: 360 MEQFHDPQSNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEI 419

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI----E 454
            + A    D  I T ++  +E    I  E+   I           +R  A+  AI     
Sbjct: 420 VEAAQHRIDSFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARA 479

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             ++ +++++ GKG E      N       D  I+  +  
Sbjct: 480 HADRFNIILIIGKGDERWIKDHNKHVPFEGDDRIVERMFA 519


>gi|189462962|ref|ZP_03011747.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
 gi|189430244|gb|EDU99228.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
          Length = 466

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 134/374 (35%), Gaps = 29/374 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  QA+ QG    V+  +    + +         
Sbjct: 55  VTTDSRNCPEGSMFIALKGETFNGNAFAAQALKQGCRYAVIDESEYAGEGT--------- 105

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    ++ +TGT+GK++    +  +  R      +     T
Sbjct: 106 ILVDNCLQALQQLANYHRRQLKTPVIGITGTNGKTTTKELISTVLSR------KFNTLYT 159

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F     +           L       +  V + A+  G  +  +   +   G  TN+
Sbjct: 160 EGNFNNHIGVP-------LTLLRLTKEHEMAVVEMGANHPGEIKTLVHIAEPDYGIITNV 212

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H+    + +     K  L++ L  K      I  ++ Y   + +     G   +  G
Sbjct: 213 GKAHLQGFGSFEGVIRTKGELYDFLRAKGGATIFIQNENPYLNGIAE-----GLTCVRYG 267

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    ++ +         + EG   +    L G + + N L AA +    G+    
Sbjct: 268 QTAGLYVSGELISCSPFLSFRWTAEGVSHEVNTHLIGSYNLDNMLAAAAIGRYFGVSDDD 327

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L        R +   T      I   Y     S+   LKN R I +   +V+ G  
Sbjct: 328 ISSALASYLPHNNRSQLKETADNK-LIVDAYNANPTSMMAALKNFRQIEAPHKMVILGDM 386

Query: 392 GDRDQGKRPIMGKI 405
            +  +  R    K+
Sbjct: 387 KELGEASREEHQKV 400


>gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 148/459 (32%), Gaps = 40/459 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+AG +FVA+ G   D   F+ +A+A+GA  +V+            +      
Sbjct: 59  ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLVLEQPPVEPVPVPVVLVP--- 115

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
               +T   L   A     +  E  +LA+TG+SGK++V      I QR        G  +
Sbjct: 116 ----DTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQRRQQVLKTRGNLN 171

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +                    L    S     + +  +  G      +         TN
Sbjct: 172 NLVG-------------LPLSLLPVEHSHRFAVLEMGMNRPGEIARMAEIALPDIACITN 218

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+      Q    AK  LF  L P     ++  DD   + +  R            
Sbjct: 219 VQEAHLAGLADVQGVARAKGELFAGL-PAWGKLVVNLDDKRVRRLAARTGQQRI-TYGRT 276

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +                T++++           GE  V NAL AA L  A G+  A 
Sbjct: 277 RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAAALATAAGVSPAE 336

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV----- 386
           +   L        R +     +    I   Y    +S+   L  +  +   R +V     
Sbjct: 337 IAAGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAALATVHNLRRQRRVVAVLGD 396

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGN 444
           +   G       R I G++A    D  +   +       + + A    G+         +
Sbjct: 397 MLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAH----QVVAAARHRGMAAARTAACAD 452

Query: 445 RIEAIRTAIEMLNKQ-----DVLVVAG-KGHETVHIVTN 477
           + E +     M++       D+++  G +G     I+  
Sbjct: 453 KEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIIDG 491


>gi|257056716|ref|YP_003134548.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
 gi|256586588|gb|ACU97721.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
          Length = 472

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 151/419 (36%), Gaps = 54/419 (12%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGT 123
            A++VS+A         I+ + P LV    R           A+ + G     +  + GT
Sbjct: 77  SAVIVSTA---------IKEDNPELVAARERGIPVLHRAEALAALMEGH---RVACIAGT 124

Query: 124 SGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK+S  S +    Q      SF IG     S     +                   QG 
Sbjct: 125 HGKTSTTSMLTVALQHCRLDPSFAIGGDLNESGANAHHG------------------QGG 166

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V+    S G                TN+  DH+D+H T  AY  A    F   +    
Sbjct: 167 IFVAEADESDGSFLSY----SPSVAVITNIEPDHLDHHGTADAYH-AVFHDFVRRIEPGG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKD 299
             I+ ADD  + E+  RA   G RVL  G          +       +   V I + G+ 
Sbjct: 222 TLIVCADDEAASELATRAEADGVRVLRYGRAATGEADARVLDYSPGEDGGTVRIVLRGEQ 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PGE   +NA+ A    + +G D   ++E L     V  RFEF G      R+Y
Sbjct: 282 LRMGVAVPGEHMAFNAVAALLAGLELGADLEGLVEGLAAFGGVRRRFEFKGRAGD-VRVY 340

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DYAH    +   L+ +R     GR++VVF                 AL LAD  +V D 
Sbjct: 341 DDYAHHPTEVSAQLRAVRQAAGRGRVVVVFQPHLYSRTRAFAAEFAEALGLADEVVVLDV 400

Query: 419 NPRSEDPE-----KIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               EDPE     ++ A  I G     E   +R  A+    ++    DV+V  G G  T
Sbjct: 401 YGAREDPEPGVTGELVASRIKGANAHYEPAFDR--AVSLVADLAKPGDVVVTMGAGDVT 457


>gi|330995897|ref|ZP_08319793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329574428|gb|EGG55999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 432

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 127/377 (33%), Gaps = 28/377 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR    G +F A+ G+  +G+ F  QA+ QG    +V  A         +  +   
Sbjct: 16  VTTDSRKCPQGALFFALKGDSFNGNAFAAQALEQGCVYAIVDEA------EYAVGDDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++    L   A     +    ++ VTGT+GK++       +  +     +  G    
Sbjct: 70  ILVEDVLATLQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTASVLSQKYNVLYTQG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P  L   L   S   +  +   AS  G  +   + +    G  TN+
Sbjct: 126 ------NLNNHIGVPKTL---LELTSEHTIAVIETGASHPGEIKALAEIVDPDFGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++   + +     K  L++ L  K     I  D    K +    H         G 
Sbjct: 177 GMAHLEGFGSFEGVVRTKGELYDYLRAKHGTVFINHDSEDLKRIAGGLHQIC-----YGS 231

Query: 273 QGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               +   +   +     +        G+  +    L G + + N L AA +    G++ 
Sbjct: 232 PCDEVLSVEGEVLECAPFLKFRWRPAGGEWQEVQTGLIGAYNMQNLLAAATIGRTFGVEV 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V   L        R +   T+     +   Y     S+   ++N R +   R + + G
Sbjct: 292 DAVNRALAAYEPKNNRSQLTETDDNK-LLVDAYNANPTSMRAAIENFRDMKVERRMAILG 350

Query: 390 CGGDRDQGKRPIMGKIA 406
             G+           IA
Sbjct: 351 DMGELGDCSWKAHQAIA 367


>gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 482

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 145/395 (36%), Gaps = 22/395 (5%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +++     ++  ++ V +DSR I    +FVA+VG + D H F+  A   G  A ++SS  
Sbjct: 20  VNVLVEAAQQLTLSRVGTDSRQIDRNELFVALVGERFDAHDFLSDAAKAGTGAALISSQD 79

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                     ++ P + V NTR  L   A      HP  +  VTG++GK++V   +  I 
Sbjct: 80  KC-------PADLPAICVSNTRVGLGNLAKAWRANHPIPLALVTGSNGKTTVKEMIASIF 132

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + +     +     T  +   D        I L   L  L S     V     +H  +  
Sbjct: 133 KAA---VGEQHTLVTKGNLNND--------IGLPLTLLKLRSTDRLAVVELGMNHPGETA 181

Query: 198 RLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +L  I +       N  R+H ++  T  A            LP +  AI  AD  ++   
Sbjct: 182 QLAVIAQANIALINNAQREHQEFMATVAAVAEEHSDAI-RTLPSDGVAIFPADSEFAGVW 240

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            + A         +              + +   V I  E    +      G   V NAL
Sbjct: 241 RQAAAGRKVIDFVLSSAQTKASAAVTGCLLSNGLVQIKSEQGTIEVQLNTLGSHNVRNAL 300

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A+ + IA G+    + + LE    V GR +    +S    I   Y    +S+ + +  +
Sbjct: 301 AASAVGIAAGVSLEKIKQGLESFSPVNGRMQAKAIDSSRTLIDDSYNANPDSVRVAIDAL 360

Query: 377 RTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
           +   +   +++   G   +QG      +G  A + 
Sbjct: 361 KQSGNLSWLILGDMGEVGNQGPEFHREVGAYAAEQ 395


>gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 471

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 155/472 (32%), Gaps = 40/472 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +    +   V  DSR ++ G +F A  G++ DGH +   
Sbjct: 1   MIALSLAEIAEIVGGQSHDIPDPATPVTGPVVIDSRAVEPGSLFAAFRGDRVDGHDYAE- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       AT     P +VVD+ +  L   A  +  +    ++A+TG
Sbjct: 60  ----------QAVAAGAAAVLATRPLGVPAIVVDDVQSALGRLARFVVERLGTKVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLQRKGPTVWTPGSLNNEIGLPLTALRATEETEHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--- 239
             + + A   G  ++  +      G   N+G  HI     ++    AK  + E L P   
Sbjct: 158 -VLEMGARGIGHIRYLTELTPPRIGLVLNVGTAHIGEFGGREQIAQAKGEMVESLPPAGE 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ-QVTISVEG 297
               A++ ADD   + +  R      RVL  G      +  + V      Q   T+    
Sbjct: 217 DGGVAVLNADDPLVRAMASRTK---ARVLLFGEADDAAVRAENVRLTELGQPTFTLHTPT 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    L GE  V NAL AA +   + + ++ +   L +   +      V     G  
Sbjct: 274 GCSDVTMRLYGEHHVSNALAAAAVAHELDMSASEIALALSEADTLSRWRMEVTERPDGVT 333

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +  D Y     S+   L+ +  +  GR    V G   +           +      + + 
Sbjct: 334 VVNDAYNANPESMRAALRALAAMGKGRRTWAVLGQMAELGDEALVEHDAVGRLAVRLNVG 393

Query: 416 TDDNPRSEDPEKI-RAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   +       G      +   +   A+      L   DV++V
Sbjct: 394 KLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRRELRPGDVVLV 445


>gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
 gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
          Length = 477

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 91/462 (19%), Positives = 158/462 (34%), Gaps = 59/462 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS      D +       
Sbjct: 24  TGVSIDTRTIAPGDLFVALKAAR-DGHDFVAQALEKGAAAALVSHVPEGVDPAR------ 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +LVVD+ +  L         +    ++AVTG+ GK+S    ++ +    G         
Sbjct: 77  -LLVVDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKTSTKEMLRCVLGAQGKVHA----- 130

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ + +     V     +H G         +      
Sbjct: 131 ---------AEKSYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLSRMARPHVAMV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+   ++ +     K  +FE L P    A+I  D   S  + + A      V+ 
Sbjct: 182 TIVAPAHLAAFESLEGIAREKGAIFEGLEP-GGTAVINGDLPVSPILREMAQARAAHVID 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G      H      I +   V      +    +   +PG     N +    +  A+G+D
Sbjct: 241 FGEAAGNHHRVTEVTICDAATVAQGRAWRSNVLYKVAVPGRHFAVNGMGVLAVAHALGLD 300

Query: 329 SALVLEHLEKLHVVPGR-------FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--- 378
            AL +  L +     GR        + V T      I   Y     SL   L+ +     
Sbjct: 301 RALAVTALGQWQPGAGRGLREVVLLDPVETQLTLELIDDAYNANPASLGASLEVLAAAEP 360

Query: 379 ------ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKI 428
                 +T GR I   G   +  +G+  +   +A   +    D+               +
Sbjct: 361 RDGLGRVTHGRRIAYVGDMKELGEGEVAMHRALAGHPSMGKIDVVHC---------VGPL 411

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             E+   +P    G   + +R  A       L+  DV++V G
Sbjct: 412 MRELWTALPYEKRGHWTEDSRAMA-ARVRHDLDAGDVVLVKG 452


>gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 148/459 (32%), Gaps = 40/459 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+AG +FVA+ G   D   F+ +A+A+GA  +V+            +      
Sbjct: 59  ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLVLEQPPVEPVPVPVVLVP--- 115

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
               +T   L   A     +  E  +LA+TG+SGK++V      I QR        G  +
Sbjct: 116 ----DTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQRRQQVLKTRGNLN 171

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +                    L    S     + +  +  G      +         TN
Sbjct: 172 NLVG-------------LPLSLLPVEHSHRFAVLEMGMNRPGEIARMAEIALPDIACITN 218

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+      Q    AK  LF  L P     ++  DD   + +  R            
Sbjct: 219 VQEAHLAGLADVQGVARAKGELFAGL-PAWGKLVVNLDDKRVRRLAARTGQQRI-TYGRT 276

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +                T++++           GE  V NAL AA L  A G+  A 
Sbjct: 277 RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAAALATAAGVSPAE 336

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV----- 386
           +   L        R +     +    I   Y    +S+   L  +  +   R +V     
Sbjct: 337 IAAGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAALATVHNLRRQRRVVAVLGD 396

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGN 444
           +   G       R I G++A    D  +   +       + + A    G+         +
Sbjct: 397 MLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAH----QVVEAARYRGMAAARTAACAD 452

Query: 445 RIEAIRTAIEMLNKQ-----DVLVVAG-KGHETVHIVTN 477
           + E +     M++       D+++  G +G     I+  
Sbjct: 453 KEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIIDG 491


>gi|15901505|ref|NP_346109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658550|ref|ZP_01409213.1| hypothetical protein SpneT_02000306 [Streptococcus pneumoniae
           TIGR4]
 gi|14973162|gb|AAK75749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 457

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 178/480 (37%), Gaps = 55/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I   +N    +  ++ +++     ++      ++    + ++   E L   D +++ G
Sbjct: 382 TVIFYGEN--IAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439


>gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
 gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae]
 gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
          Length = 428

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 140/381 (36%), Gaps = 30/381 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S D+R I+ G +F AI G   D + F  +A+  GA  +V+ +     D         
Sbjct: 14  QSLSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYFIDDRT------ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V+N+ + L   +          I+A+TG++GK++    +  +  +   +   IG  
Sbjct: 68  --ILVNNSLETLQELSKFHRNYLKLPIVALTGSNGKTTTKELINVVLSKKFKTKATIG-- 123

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   LS+     +  V + A+     +   +  +   G  T
Sbjct: 124 --------NLNNHIGVPLTL---LSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYGYIT 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     Q     K  +++ LL       +  +D      ++++         V
Sbjct: 173 NFGKAHLEGFGGVQGVIEGKSEMYQYLLKNNKTVFVNLEDPIQ---IEKSTGIKNFTFGV 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   + +K + A        + +E +DF     L G +   N   A  +     ++ A
Sbjct: 230 NKESADLKIKNIQANPF-----VVIEYEDFKVESHLIGLYNANNINAAVSIGKYFNVEDA 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           L+ E +E       R + +   S    I   Y    +S+ + + N   + +   I++ G 
Sbjct: 285 LIKEAIENYIPANNRSQLLKKGSNEI-ILDAYNANPSSMAVAITNFLQLENQNKIMILGD 343

Query: 391 GGDRDQGKRPIMGKIALDLAD 411
             +           I   L++
Sbjct: 344 MFELGNESHEEHKAIVDSLSN 364


>gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
 gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
          Length = 464

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/478 (18%), Positives = 173/478 (36%), Gaps = 56/478 (11%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + KIN VS +S+ +    IFVAI G    G+ F+ +A+ +GA A+  S A  + +  A 
Sbjct: 17  SDFKINNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGAFAVYDSEAVKIDEKYAE 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                    V ++ +FL  FA          ++ +TG++GK++V   +  +  +      
Sbjct: 73  RA-----FFVKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQ------ 121

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +     T  ++                 L          + +  S  G            
Sbjct: 122 KYKGKKTEGNYNNHIG-------LPFTLLRAEKDDDFIILEMGMSDFGEIDLLGQIALPD 174

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV----MKRAH 261
               TN+G  H+++ +T++  F AK  +   +   +S  +I  DD Y K V    ++   
Sbjct: 175 INVITNIGESHLEFLKTKENVFLAKTEIIPHI---KSTLVINGDDKYLKNVKAENIEIVR 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQVYNA 315
               R      +    +   +    +     +   GK      + ++   + GE  V N 
Sbjct: 232 ALNLRNNEYEDKTSDFYYGDIHFDESGTNFFLKYFGKMCQSTVERNYKTNVLGEHNVLNL 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           ++A  +    G++  ++ E ++ + +   RF+ +  N     I   Y  +  S++  L+ 
Sbjct: 292 VMAIAVAKQFGMEDKIISEAVKNIELTGMRFQII-ENGNTTYINDAYNASPMSMKKSLET 350

Query: 376 IRT-ITSGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
                     I+V G   +  +      R +   I     D   +  +  +S   EKI+ 
Sbjct: 351 FSLIFNDKLKIMVLGDMLELGERELEIHRDLFDTIKNTNFDKLYLFGERMKSL-LEKIKE 409

Query: 431 EIIHG-----------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            + +G              F EK    + IR  I       VL+ A +G +   I+  
Sbjct: 410 NMDNGNLENESLKNKEFEYFDEKNKIKDRIRE-ISESKA--VLLKASRGMKLEEIIEK 464


>gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
 gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
          Length = 447

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 166/453 (36%), Gaps = 42/453 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R +  +S+D+R ++AG I+VA+ G   DGH ++  AI +GA A+VV  A        
Sbjct: 20  GDDRVVTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTAIHKGAGAVVVQDALP------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P LV+ +TRK L + A  L  +    ++A+TG+ GK+S  + + +I +      
Sbjct: 74  --DCPVPQLVLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKTSTRAMLTEIFKL----- 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            Q G  +T  +F  D  +         +    L   G       A             + 
Sbjct: 127 -QPGLLATEGNFNNDIGVPKTWFRLTDQHQRVLLELGANAQQEIAW-------LGSFSRP 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N    H +     +     K  + +     E   ++  DD      +K+A +  
Sbjct: 179 HISLLLNAAEAHTEGFGGLEGVRQGKGEIIDA-THSEGGVVLNKDDPAYNRWLKQAGDR- 236

Query: 265 CRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            ++++ G +    + L       +  + T+ +   D    +P+ G+    NA  AA    
Sbjct: 237 -KIVTFGRHSDADVCLLSFKNNSHGSEYTLGMPDGDLSVSWPVLGKHMAINAAAAAATAW 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G+ +  + + L  +   PGR E V +   G  I+  Y     S    +  +  +    
Sbjct: 296 LAGVSALDIAQGLSAMQPEPGRMEPVDSMHGGALIHDAYNANPASFRAAIDVLEDLGEDT 355

Query: 384 IIVVFGCGGDRDQGK--RPIMGKIALDLADIAIV-------TDDNPRSEDPEKIRAEIIH 434
           +++        D+       +G  A                  D       E I  E++ 
Sbjct: 356 LLIAGDMAELGDESANLHREVGLYARGKIQHIWSVGKESLQISDAFGGHHFESI-EELLA 414

Query: 435 GIPGFIE-------KGNRIEAIRTAIEMLNKQD 460
            +P  +E       KG+R   +   ++ L ++D
Sbjct: 415 MLPAKLETETAVLVKGSRSSGLERVVDALRRKD 447


>gi|325962945|ref|YP_004240851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469032|gb|ADX72717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 488

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 134/448 (29%), Gaps = 35/448 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSR    G ++VA  G   DGH F+  A A GA   +V       D +       P
Sbjct: 27  SVVTDSREATQGSLYVAKPGENADGHDFVGSAFAAGATLALVEHPVLSPDGTPY-----P 81

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVASFVQQICQRSGL 142
            ++V +    +   A+    +             ++ +TG++GK++    +  I    G 
Sbjct: 82  SVLVPDAVLAMGKLAAESVRRIRAARAETNDELTVIGITGSAGKTTTKDLLAGILSAHGT 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +                 YL              + + A+  G   + +D +
Sbjct: 142 TVAPKGSYNGEIGVPLTVFTAGTDTRYL-------------VIEMGATGIGHISYLVDMV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G    +G  H       +    AK  L E L      AII  DD     +  R   
Sbjct: 189 KPDIGVVLAVGTAHAGEFGGVENIAQAKGELVEGL-AASGTAIINLDDERVAAMQARTSA 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD--FDFLFPLPGEFQVYNALVAA 319
           +     + G  G  +             +  + + G D        L G     N L AA
Sbjct: 248 SVLGFTAEGRPGAAVQALNADTNAEGNPEFDLLLPGGDTPHHVSSRLIGAHHTGNLLAAA 307

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
               A G+    +   L                + G  I  D Y     S+   L+ +  
Sbjct: 308 AAAWAAGVSGEDIAAALSSQAAASRWRMERTERADGVTIINDAYNANPESMRAALRTLAD 367

Query: 379 ITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-- 435
           +  GR    V G   +  +        +   +  + I        E      + +  G  
Sbjct: 368 LGQGRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREARALYVSAVQEGSW 427

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               I   +  EA       L   D+++
Sbjct: 428 GDECIFAEDAEEAYELLSAELEPGDLVL 455


>gi|149011468|ref|ZP_01832715.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684612|ref|YP_001836359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303258599|ref|ZP_07344579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262686|ref|ZP_07348626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303263626|ref|ZP_07349548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
 gi|303266387|ref|ZP_07352276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|303268260|ref|ZP_07354058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|147764458|gb|EDK71389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629946|gb|ACB90894.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802372|emb|CBW35126.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV200]
 gi|302636242|gb|EFL66737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640100|gb|EFL70555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302642211|gb|EFL72560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|302644087|gb|EFL74345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|302646664|gb|EFL76889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
          Length = 457

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 157/430 (36%), Gaps = 52/430 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   + +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKLT------IHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         +     T  ++         + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + +      T +G  H+ + + +      KM++ + +
Sbjct: 150 EGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++   D     +++       +V+  G   +   L+    +  K  +T     
Sbjct: 210 --ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANF 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  
Sbjct: 261 LEQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA--- 410
           I  D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   
Sbjct: 320 ILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDV 379

Query: 411 -DIAIVTDDN 419
            D  I   +N
Sbjct: 380 LDTVIFYGEN 389


>gi|158321669|ref|YP_001514176.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus oremlandii
           OhILAs]
 gi|189028969|sp|A8MK48|MURC_ALKOO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158141868|gb|ABW20180.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus oremlandii
           OhILAs]
          Length = 465

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 167/434 (38%), Gaps = 46/434 (10%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYG--- 111
           I +  A GAE  +  +  +++D     ++A I+ + P  +    R    +  + + G   
Sbjct: 49  INKLRAHGAEIFIGHNEDNVKDPDLVVYTAAIKEHNPERMAAKERNIPQIDRAEMLGIIM 108

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K+ +  +AV+G+ GK++  S +  I + S L    +            N     S  ++ 
Sbjct: 109 KNYKKAIAVSGSHGKTTTTSLISLIMEYSNLDPTIM--VGGELDEIGGNIKIGNSEHFIT 166

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y+ S    +                      G   N+  DH+DY +       A  
Sbjct: 167 EACEYVESFLKFY-------------------PFIGIILNIDEDHLDYFKDLNHIKEA-F 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ- 290
           R F  L+P+E   I   DDA  +E++   H+  C +++ G       + +  +  N    
Sbjct: 207 RKFINLIPQEGFLIANGDDANVQEIL---HSIECNLITYGLDSSNTFVARNISFTNDGYP 263

Query: 291 -VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  +G+    F   +PG+  +YNAL +      +G++ + +  H++K   +  RF+ 
Sbjct: 264 IFTVDFKGESMGTFELNIPGKHNIYNALASIATAYLLGVEPSEIQNHIKKFRGIHRRFDI 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +G   +G +I  DYAH    +   L+  +     +I  VF                 +  
Sbjct: 324 LG-EVKGCKIVDDYAHHPVEISATLEAAKNYPHNKIWCVFQPHTFSRTKALLEDFSRSFT 382

Query: 409 LADIAIVTDDNPRSE-DPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQD 460
            AD  I+TD     E D  ++ +EI+  +              +  +      + +   D
Sbjct: 383 NADHIIITDIYAAREQDTGEVHSEILANMIQKNNMHSQVRYMKDFEDIAAYIYDHMEPGD 442

Query: 461 VLVVAGKGHETVHI 474
           +++  G G+    I
Sbjct: 443 LVLTMGAGN-VYQI 455


>gi|168488616|ref|ZP_02712815.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|221232407|ref|YP_002511560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855100|ref|YP_002736612.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298230135|ref|ZP_06963816.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254426|ref|ZP_06978012.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503414|ref|YP_003725354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|183572707|gb|EDT93235.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|220674868|emb|CAR69443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722486|gb|ACO18339.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298239009|gb|ADI70140.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|332072499|gb|EGI82982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17570]
          Length = 457

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/483 (17%), Positives = 175/483 (36%), Gaps = 61/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPIDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
           I I        ED  ++        P          E  ++ E  ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAG 466
           + G
Sbjct: 437 LKG 439


>gi|327489499|gb|EGF21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1058]
          Length = 456

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 177/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I+   +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +  +    S    +  P L+VD+        A     K   ++LAV
Sbjct: 56  AT----------AFAHGAAATLSDHPVAEGPYLLVDDVLTAFQCLAQYYLEKRQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A  +++  G       +   C    K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADYKLVRFGPDAD---IFLTCLEERKDSLSFDCNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   +L +   R E+      G  I 
Sbjct: 263 KRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E ++ A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKG 439


>gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
 gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
          Length = 487

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 161/476 (33%), Gaps = 50/476 (10%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P  +   +   +    R +   S D+R ++ G +F AI G   DGH F+  A+ +     
Sbjct: 9   PAALESATGGRLIGAPRAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALEK----- 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVV-----DNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
              +A      +       P+L V     D   + +         +    I+AVTG+ GK
Sbjct: 64  GAGAAVVAAARANEFEGVGPVLAVPGEDEDPVLEAMRRLGLAARARTGAAIVAVTGSVGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +     ++ +    G +   +               +  +   +   L+ +  Q    V 
Sbjct: 124 TGTKEALRHVLSAQGATHASV--------------ASYNNHWGVPLTLARMPEQTRFGVF 169

Query: 187 VEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +HG         ++      T +   HI++ ++  A  +AK  +F  L P    A+
Sbjct: 170 EIGMNHGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKP-GGVAV 228

Query: 246 IYADDAYSKEVMKRAHNAGC-RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I  D+   + ++  AH +   RV++ G +    +   ++    +   V  SV G    + 
Sbjct: 229 INRDNPNYERLLAHAHASRAGRVITFGEHAAADVRANRILTRPDVSVVDASVMGVPLTYQ 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD- 361
              PG     N+L       A+G D A     L  L    GR E        G    +D 
Sbjct: 289 LGTPGRHVAMNSLGVLACIHALGADLARAALSLAALKPPVGRGERTALRVGDGEAFLIDE 348

Query: 362 -YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIA 413
            Y     S+   L  +  I     GR I V G   +     +   R +   +A    D+ 
Sbjct: 349 SYNANPASIRAALATLAGIETGAKGRRIAVLGDMKELGAAGETHHRELADAVAGHGIDVV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAI-EMLNKQDVLVVAG 466
                         + A +   +P  +        E +  A+   L   D ++V G
Sbjct: 409 F---------AVGPLMAHLFEALPMAVRGTAAPSAEGVTDAVLATLRPGDAVMVKG 455


>gi|332200229|gb|EGJ14302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 457

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/483 (17%), Positives = 173/483 (35%), Gaps = 61/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                 +   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLFLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+      G  I 
Sbjct: 263 QVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEW-KKAVNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
           I I        ED  ++        P          E  ++ E  ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAG 466
           + G
Sbjct: 437 LKG 439


>gi|308235558|ref|ZP_07666295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 576

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 132/378 (34%), Gaps = 43/378 (11%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           +SDSR +    IFVAI G++ DGH F+ +A   GA+  +V     L + +    S    +
Sbjct: 70  TSDSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESN---NSKIAQI 126

Query: 94  VVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           VV+N+ + L L A     +      P +I+ +TG+ GK++    ++ +    G +   IG
Sbjct: 127 VVENSVEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIG 186

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +        +     +  +L                + A+  G               
Sbjct: 187 SFNNEIGLPLTSLQVNENTRFLIAE-------------MGANHVGEIAKLTTIAPPDLAV 233

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
              +G  H+    + +    AK  +   L+     AI+ ADD     +   A     R  
Sbjct: 234 VLKVGVAHLGEFGSVERIAQAKSEIVRGLVAH-GIAILNADDFRVSAMRSLADQDKLRWF 292

Query: 269 --SVGYQGKFIHLKKVCAIHNKQQVTISVEG---------------KDFDFLFPLPGEFQ 311
             +   +G F          +   +++   G                       + G+  
Sbjct: 293 GKNSNTEGDFDASNNGNYQLSASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHN 352

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVD-YAHTSN 367
           V NA+ A+ +    G++   + + L ++  +         +  N+    +  D +    +
Sbjct: 353 VMNAMAASNVARYFGMNLDSIAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPD 412

Query: 368 SLEMILKNIRTITSGRII 385
           S++  +  + +  +  + 
Sbjct: 413 SMKAGIDGLCSYENHDLH 430


>gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum MopnTet14]
          Length = 450

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 158/450 (35%), Gaps = 49/450 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G IF A+ GN+  GHLF+ QA   GA A VV+  Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +  V + R+ L              ++ +TG+ GK++  SF QQ+           
Sbjct: 78  -GLQLFHVADPRESLREAGRTQGALFQGEVIGITGSVGKTTTKSFTQQLL---------- 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV---SVEASSHGLDQHRLDGIKL 204
                 SSF +           L   LS L + G        +  S  G  ++ L+ I+ 
Sbjct: 127 ------SSFYKVFASPKSYNSQLTLPLSILMADGDEDFLLLEMGVSEPGNMKNLLEVIEP 180

Query: 205 IAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G  T++   H      +  +     K  L E         ++  D ++    MK+   
Sbjct: 181 TIGVITHIDVQHAMNFLDKGAKGIVEEKSLLLERC----GLQLLPKDSSWFPFFMKKNST 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A     S+  +    + + +    +   V IS    D +     P      N LVA  L 
Sbjct: 237 AEQFSFSMNNETSDFYYRAI----HSDGVLISAPDGDIELPVVFPYSPAYMNFLVAVALA 292

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
               +    + +    L +   RFE       G R+  D Y  + +S+   L  +     
Sbjct: 293 WLTNVPMDRLEQVSPSLILPSMRFEQQ--EYNGIRVINDAYNASPDSMLAALDAVPVPPE 350

Query: 382 GRIIVVFGCGGDRDQG-----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           G    VF  G   + G         + + A+  A + +        E    +R  +    
Sbjct: 351 GGKR-VFILGHMAELGKYSNECHVAVARKAVTKAHVVVFI-----GEKWFPVRDVVRDAN 404

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 G+  E +     ++ + DV+++ G
Sbjct: 405 CQIEFYGSVNEIMHVVKSLVRQGDVVLLKG 434


>gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 482

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 144/410 (35%), Gaps = 34/410 (8%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            E +   +   +   ER I+  S D+R +Q G +F AI G+  DGH F+P A+ +     
Sbjct: 7   REELESATGGCLTGAERAISGASIDTRTLQPGDLFFAIRGDARDGHDFVPDALGR----- 61

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPENILAVTGTSGK 126
              +A      +  + ++ P+L V           +    +    +    ++AVTG+ GK
Sbjct: 62  GAGAAVVSAARAEALAAHGPVLAVPEGGADPVLTAMVRLGAAARARTSAQVVAVTGSVGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +     ++ +    G +                +  +  +   +   L+ +       V 
Sbjct: 122 TGTKEALRHVLSEQGETHA--------------SAASYNNHWGVPLTLTRMPRSARYGVF 167

Query: 187 VEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +HG         ++      T +   HI++  +  A  +AK  +F  L P    AI
Sbjct: 168 EIGMNHGAEIVPLTAQVRPDIALITTIAPAHIEHFASLAAIADAKGEIFSGLRP-GGVAI 226

Query: 246 IYADDAYSKEVMKRAHNAGC-RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +  D  +   +   A  +   RV++ G +    +   K+    +   +  +V G+   + 
Sbjct: 227 LNRDAPHFDRLAAHAQASRAGRVVTFGEHPDADVRALKIVLRPDLSVIDAAVMGQPVTYK 286

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--- 360
               G     N+L    +  ++G D A     L  L    GR E       GG  Y+   
Sbjct: 287 LGTAGRHAALNSLGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGTAYLVDE 346

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            Y     ++   L  +  I     GR I V G   +       +   +A 
Sbjct: 347 SYNANPVAVRAALATLAGIETGPRGRRIAVLGDMLELGAAAPDLHRGLAE 396


>gi|300726265|ref|ZP_07059718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
 gi|299776462|gb|EFI73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
          Length = 434

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 147/425 (34%), Gaps = 37/425 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR      IF+A+ G   DG+ F   A+ +G    ++            +  ++  
Sbjct: 16  VTTDSRDCPQDSIFIALKGESFDGNKFAASALEKGCSYAIIDEK------EYAVEGDSRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++ DNT       A     +    ++ +TGT+GK++    V  +         +     T
Sbjct: 70  ILTDNTLTTFKELAREHRRQFDIPVIGITGTNGKTTTKELVSAVLSE------KYNVMHT 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D  +           L       +  V + AS  G     +  ++   G  TN+
Sbjct: 124 EGNFNNDIGVPK-------TLLRLNKEHEIAVVEMGASHPGDIDVLVKYVEPTCGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   ++   +   + +  +++++      RV++ G 
Sbjct: 177 GRAHLLGFGSFEGVKKTKGELYDFLAENDALVFLNESNPHLVKMVQQ--RNINRVITYGQ 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   +V +     +     EG+   ++    L G + + N L A  + +  G+D  
Sbjct: 235 DEDANIQGEVLSCAPFLKFNWRKEGEPQLYEVQTQLIGAYNIDNMLAAITIGLHFGVDPV 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   LE       R +   T +    I   Y    +S+   L+N + +     + + G 
Sbjct: 295 QINHALENYCPSNNRSQLTVTENNK-LIVDAYNANPSSMAAALENFKVMAVSPKMAILGD 353

Query: 391 GGDRDQGKRPIMGKIA----LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
             +          KIA        D   +       E+ EK           F       
Sbjct: 354 MRELGNVSDAEHQKIADMLKECNIDKVWL-----VGEEFEKTNC----NFTKFHNVDEVK 404

Query: 447 EAIRT 451
           EAIR 
Sbjct: 405 EAIRQ 409


>gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 329

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 113/296 (38%), Gaps = 16/296 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +++D+R +QAG +FVA+ G K DG  F   A+  GA A+++    S        R+ 
Sbjct: 28  FAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRTP 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T       A     K    ++AVTG++GK++            G        
Sbjct: 88  GAVIGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRG-------- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                +  +               L          V +     G             G  
Sbjct: 140 -----AVCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H++   + +    AK  L E + P     I+ ADDA    +  +A + G R+L+
Sbjct: 195 TNVGETHMELLGSIENIARAKSELVEAIAP-GGIVILNADDARVAAMRAQAAD-GVRILT 252

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G + K  I  + + +  N+ +  ++  G+  D+  PL G   VYN   A G   A
Sbjct: 253 YGIRAKADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNTRGACGGLCA 308


>gi|311114354|ref|YP_003985575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310945848|gb|ADP38552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 577

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 132/378 (34%), Gaps = 43/378 (11%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           +SDSR +    IFVAI G++ DGH F+ +A   GA+  +V     L + +    S    +
Sbjct: 71  TSDSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESN---NSKIAQI 127

Query: 94  VVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           VV+N+ + L L A     +      P +I+ +TG+ GK++    ++ +    G +   IG
Sbjct: 128 VVENSVEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIG 187

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +        +     +  +L                + A+  G               
Sbjct: 188 SFNNEIGLPLTSLQVNENTRFLIAE-------------MGANHVGEIAKLTTIAPPDLAV 234

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
              +G  H+    + +    AK  +   L+     AI+ ADD     +   A     R  
Sbjct: 235 VLKVGVAHLGEFGSVERIAQAKSEIVRGLVAH-GIAILNADDFRVSAMRSLADQDKLRWF 293

Query: 269 --SVGYQGKFIHLKKVCAIHNKQQVTISVEG---------------KDFDFLFPLPGEFQ 311
             +   +G F          +   +++   G                       + G+  
Sbjct: 294 GKNSNTEGDFDASNNGNYQLSASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHN 353

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVD-YAHTSN 367
           V NA+ A+ +    G++   + + L ++  +         +  N+    +  D +    +
Sbjct: 354 VMNAMAASNVARYFGMNLDSIAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPD 413

Query: 368 SLEMILKNIRTITSGRII 385
           S++  +  + +  +  + 
Sbjct: 414 SMKAGIDGLCSYENHDLH 431


>gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
 gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
          Length = 462

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 152/396 (38%), Gaps = 35/396 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ VS D+R ++ G +FV +VG + DGH F+PQA+A GA  ++ + A          
Sbjct: 22  DFAVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAVANGAAGVLAARAV--------- 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             + P ++V +T K L         + P+    AVTG+ GK+SV   ++   + +G +  
Sbjct: 72  --DAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKTSVTRAIEAGLRLAGKAHA 129

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKL 204
            +               +  + I +   L+ +       V     +H  +   L G ++ 
Sbjct: 130 SV--------------KSYNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSGFVRP 175

Query: 205 IAGSFTNLGRDHIDYHQTQQA-YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            A + T +G  HI+     +A    AK  +   L P    A++ AD+ +   +   A   
Sbjct: 176 HAVAITTVGPVHIENFSDGEAGVARAKAEILAGLQP-GGIAVLNADNHWFDFLKGEAEKV 234

Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G  V S G   G    L           V++ + G+   F     G     N+L    + 
Sbjct: 235 GATVWSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCVLLML 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTI 379
            A+ +     L  L     + GR         GG    +   Y     S++  LK +   
Sbjct: 295 EALDVPRETALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKTLGAR 354

Query: 380 T-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +GR +V      +  +G      ++A  +A   +
Sbjct: 355 KVAGRRVVALTDMLELGEGSAQFHAELAEPIAAANV 390


>gi|319900256|ref|YP_004159984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415287|gb|ADV42398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
          Length = 432

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 144/378 (38%), Gaps = 28/378 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F  +A+ QG+   +V  A            NT
Sbjct: 14  TCVTTDSRNCPQGSLFIALKGANFNGNAFAAKALEQGSTYAMVDEA------QYAPAGNT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN  + L   A+    +    I+ +TGT+GK++    +  +  +     +  G  
Sbjct: 68  HYILVDNCLRTLQKLANYHRNQQGTRIIGITGTNGKTTTKELMAAVLSQGHSVLYTQG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   L   +   +  + + AS  G  +  ++  +   G  T
Sbjct: 126 --------NLNNHIGVPLTL---LRLKAHHDLAVIEMGASHPGDIRELVEITEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   +       K  L++ L  + +S   I  D+ Y KE+       G  ++ 
Sbjct: 175 NVGKAHLEGFGSFDGVIKTKGELYDYLRRRGDSTIFIDHDNPYLKEIA-----WGLNMIP 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G + +     ++               EG+  +    L GE+   N L A  +    G+
Sbjct: 230 YGTEDELYVNGRITGNSPYLTFKWKAGKEGERHEVQTQLIGEYNFPNVLAAVTIGRFFGV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + A + + L +      R +   T      I   Y     S+   + N R + +   +++
Sbjct: 290 EPAKIDKALAEYVPQNNRSQLKKTADN-ILIVDAYNANPTSMMAAISNFRNMQAENKMLI 348

Query: 388 FGCGGDRDQGKRPIMGKI 405
            G   +  +       KI
Sbjct: 349 LGDMRELGKDSAEEHQKI 366


>gi|167630129|ref|YP_001680628.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592869|gb|ABZ84617.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 461

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 157/443 (35%), Gaps = 49/443 (11%)

Query: 50  VGNKEDGHLFIPQAI-----AQGAEAIVVSSAYSL------QDFSATIRSNTPILVVDNT 98
            G    G      A+     +QGA          L         S  ++ + P L +   
Sbjct: 28  QGYTVSGSDLADTAVTERLVSQGATVFQGHREEHLLPGVDVVVVSTAVKGDNPELRLAKE 87

Query: 99  RKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           R         L A  +  K     +AV GT GK++ ++ +  + ++ GL    I     I
Sbjct: 88  RNLTIWHRADLLAWLMEQK---KGIAVAGTHGKTTTSAMIGLMLEQCGLDPAII-VGGEI 143

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                + +                         + A +   D+  L  +       TN+ 
Sbjct: 144 REIEGNAKWGQGD-------------------FMAAEADESDRSFLK-LSPWMAVITNIE 183

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH+D++Q+ +A   A  + F E L  +   ++ ADD   +E+ +R          +  +
Sbjct: 184 ADHLDHYQSFEAIVEAFYQ-FTERLSGDGILLLCADDPLLQEMAQRVTARRVVTYGMKAK 242

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             +  +   C     Q      E +    +  +PGE  + NAL A      IGI  A   
Sbjct: 243 ADYRAVDLSCTGKGSQADIFRGEERLGRLMLSVPGEHNMSNALAAVACADLIGIPFAAAA 302

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             L +   V  RF+ +G  ++G  +  DYAH    ++  L   R    GR++ VF     
Sbjct: 303 AALSRFGGVGRRFQRMG-EAKGVSVVDDYAHHPTEVKATLAAARQTQPGRLVAVFQPHRY 361

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIH--GIPGFIEKGNRI 446
                       A D AD+ ++++  P  E P       +  ++         +   ++ 
Sbjct: 362 TRTRDLYREFGEAFDAADVVVLSEIYPAGEAPIPGVSSGLIRDVYERRCGRKALYAADKE 421

Query: 447 EAIRTAIEMLNKQDVLVVAGKGH 469
           E +R   +++   D+++  G G+
Sbjct: 422 ELLRRLQDLVKPGDLVLTMGAGN 444


>gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
 gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
          Length = 468

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 150/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A +   LE    V GR + V   +    G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAIKAGLEAFAPVKGRLQVVRAAAGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|258540735|ref|YP_003175234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|257152411|emb|CAR91383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 462

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 151/412 (36%), Gaps = 38/412 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+      +    V+ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKMT------LAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLHGER-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENI 117
           FIP        A   + A  + +    + +  P LVV +    +   A      K    +
Sbjct: 54  FIPA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKV 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++GK++       I         Q     T  ++  +  +           LS  
Sbjct: 108 VAITGSNGKTTTKDMTAAILAT------QYHVVKTPDNYNNEIGVPM-------TILSME 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V  + +     G         +      T +G  HI++ +T+    +AKM + + L
Sbjct: 155 PNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGL 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
             ++   I   D+     ++ RA        + G   +       +    N  + T+  +
Sbjct: 215 -KEDGTFIFNGDEPL---LVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVE-Q 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  F  P+ GE+ V NAL A  +     +    + + L    V   R +++     G 
Sbjct: 270 WPELTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALAHFQVTANRTQWL-IGDVGE 328

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +I  D Y     +++ ++ +     T+GR I V G   +     R +   +A
Sbjct: 329 QILSDVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGDQSRALHAGLA 380


>gi|89067944|ref|ZP_01155388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046542|gb|EAR52598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
          Length = 480

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 89/459 (19%), Positives = 161/459 (35%), Gaps = 47/459 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +  G +FVA+   + DGH F+ QA+ +GA A +V+           + ++ 
Sbjct: 24  DGVSIDTRTLAPGDLFVALKAAR-DGHEFVAQALEKGAAAALVT------HRPEGVAADA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+LVV +    L         +    + A+TG+ GK+S    ++   +R G +       
Sbjct: 77  PLLVVPDVLAALEALGRAARARTNARVAAITGSVGKTSSKEMLRAALERQGRTHA----- 131

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ + +     +     +H G         +      
Sbjct: 132 ---------AEASYNNHWGVPLTLARMPADTEYAIVEIGMNHPGEIAPLARLARPHVAMV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++   + +     K  +FE L P    AII  D   +  +   A  AG  ++S
Sbjct: 183 TIVAPAHLEAFDSIEGIAREKASIFEGLEP-GGTAIINGDLPTTPILRAAAEAAGAEIVS 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G Q    H      +H    V +  +   +        G     NAL       A+G D
Sbjct: 242 FGTQAGNHHRLTDIKVHEGCTVASARLWRTEVHLKVATEGAHFAVNALGCLATAAALGAD 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-----VDYAHTSNSLEMILKNIR------ 377
            +  L  L      PGR          G        +D A  +N   +            
Sbjct: 302 RSHALMGLACWAPPPGRGTRETLVLDDGVAVGAIELIDDAFNANPASLAAALEVLAAARP 361

Query: 378 -----TITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKIRA 430
                 I  GR I + G   +       +   +A +  +A + +V    P   +  +   
Sbjct: 362 RDDLGHIGKGRRIAILGDMLELGPEAAGLHAAVADEPAMAHVDLVHCVGPLMRELHRALP 421

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
           +   G   ++E    + A   A  +++  DV++V G KG
Sbjct: 422 DGRRG--RWVENAEDLAA--KAARLVDPGDVVLVKGSKG 456


>gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
          Length = 452

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 149/417 (35%), Gaps = 32/417 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++L      ++        +   +  + +VS+DSR   +  +F+A+ G K +GH F+ +
Sbjct: 2   LKELKLSQIADICGG----TLFGEDACVIDVSTDSRDDLSNKLFLALRGEKFNGHSFVDK 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI QGA  ++V     +           P +VV NT       A  L       + ++TG
Sbjct: 58  AIDQGASGVLVDVDSGVSLE--------PRIVVHNTLLAYHDIARFLRDAFQGRVFSITG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+SV  ++ Q  +  G          T S+F           I + K L  + +   
Sbjct: 110 SNGKTSVKDWLAQSLEDFGC------VLKTQSNFNNH--------IGVPKTLIQIENNHQ 155

Query: 183 THVSVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V    +S  G        I       TN    H++   + +A    K  L        
Sbjct: 156 FAVVEAGTSFPGEISILSKTIHADVVIVTNASGSHLEGFGSTKAIAEEKGDLITY-SSLY 214

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           S  I+  DD + +              S+      +++  +    ++    +    +   
Sbjct: 215 SKVILNFDDPFFEYWKGLTGKREFFSFSLSDASADLYVSDLDLGASESSCIVHFRDQSSL 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P PG+ QVYNAL   G  + + +     L  + K   V GR EF  T +    I   
Sbjct: 275 VTIPAPGKHQVYNALAVIGALMHVDVHFIDALNKVSKAVQVKGRMEFGLTKNNALLIDDC 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAI 414
           Y  +  S+E  +  +      +  +V G     G   +   R +    A    D  +
Sbjct: 335 YNASPTSVEAAIDVLSMQKPIKKWLVLGALGELGDQEESIHRGLGKYAAEKKIDCVL 391


>gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
 gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
          Length = 455

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 170/480 (35%), Gaps = 54/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E+   L+       +  +   + DSR ++ G +F+ +V +  DGH ++
Sbjct: 1   MKLT------LREMATILNAPIQNEADVAVTSTAFDSRQVKPGGLFIPLVADN-DGHHYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A + GA   +  + +        + S+ P+++V +T       AS    +    ++AV
Sbjct: 54  DAAESNGATVALWQADHQ------NVPSHLPVIIVPDTLAAYQQLASHYLSQVDPLVVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G++GK++   F+  I Q S           T  +F  +N +  P  I      + L   
Sbjct: 108 SGSNGKTTTKDFIAAIGQTS------YKTVKTPENF--NNEIGVPQTILSMPTDTELL-- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G        +K      T +G  HI++ +T++   + KM +   L  +
Sbjct: 158 ---VIEIGMDHPGDLTFLSKLVKPDIALLTMIGEAHIEFFKTRERIADGKMEIINGL-KE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +   D+    E  +   +A     S G       L          Q +        
Sbjct: 214 HGHLVFNGDEPLLLE--RVGQHAHLLHDSFGLNS-TNDLFASEIDMTPVQASFKTNQSAQ 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G + V NAL A  +   + I    + + L +  +   R E++     GG+I  
Sbjct: 271 RFTIPMTGRYNVTNALSAITVGHLLHISDKKIAQALAEAPITENRTEWLD-GQFGGKILS 329

Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIAL-----DLADIA 413
           D Y     + + +L         G+ I V G           +   +        +A + 
Sbjct: 330 DVYNSNPTAAKEVLHFFADTPTQGKRIAVLGDMLQLGDASPALHASLMENLNPDKIAHVY 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAG 466
           +V       E+ + +   ++   P    K     AI       +  +  L   D +++ G
Sbjct: 390 LV------GEEIKSLEEALLPIYPAGTVK---RYAIDDPESLLKDLLADLTSDDTIMLKG 440


>gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
          Length = 466

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 140/423 (33%), Gaps = 38/423 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+L         E++                I  V  DSR +  G +FV I G + DGH 
Sbjct: 1   MRLT------LSEILAATGAVGDVGERGNPDIEAVRIDSRAVSPGSLFVCIPGERLDGHN 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F  +A+++GA A++           A +   TP+L+V +T   L   A     +    ++
Sbjct: 55  FAVEAVSKGAAAVLADRPL------AGLPEGTPVLLVRDTVAALGKLAKAWRERAQARLV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV+G++GK++V      I  + G +             A++ +            L    
Sbjct: 109 AVSGSAGKTTVKELTAAILAKVGPT-------------AKNFKNFNNKIGLPLSMLEAGE 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  +  + +  S+ G         +       N+G  H++           K RLF  L 
Sbjct: 156 TDRLWVMELGISAPGEMAPLAAIAEPDVAVIHNVGPAHLEALIDVAGVAAEKSRLFAALR 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEG 297
           P      + + D        +A     R +SV         K + A+     +  + ++G
Sbjct: 216 P--GGVALASMDYPELWAAAKAVRPDVRGMSVKGGSAPYRAKYLGALSEGRGRFFLRLDG 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + + + PL G     N L AA     +G     +   LE    V     F         
Sbjct: 274 LELEVVTPLTGGHFAENILAAAASARLLGATEEQIATGLES--AVMPEQRFFCRRHGCYT 331

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVF-----GCGGDRDQGKRPIMGKIALDLAD 411
           +  D Y     S+   +        G+ +V+        G   +     +  + A   A 
Sbjct: 332 LIDDTYNANPLSMRRAIATAAEAAQGKPLVLVLGEMREMGAQAEDEHHKLGEEAAASGAK 391

Query: 412 IAI 414
              
Sbjct: 392 AVF 394


>gi|225861498|ref|YP_002743007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727141|gb|ACO22992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389856|gb|EGE88201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 457

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 172/481 (35%), Gaps = 57/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   + +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKLT------IHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         +     T  ++         + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + +      T +G  H+ + + +      KM++ + +
Sbjct: 150 EGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++   D     +++       +V+  G   +   L+    +  K  +T     
Sbjct: 210 --ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANF 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  
Sbjct: 261 LEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEW-KKAANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   
Sbjct: 320 ILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDV 379

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           + T      ED  ++        P          E  ++ E  ++   E L   D +++ 
Sbjct: 380 LDTVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLK 438

Query: 466 G 466
           G
Sbjct: 439 G 439


>gi|229551598|ref|ZP_04440323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315063|gb|EEN81036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
          Length = 463

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 151/412 (36%), Gaps = 38/412 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+      +    V+ DSR ++ G +FV + G + DGH 
Sbjct: 2   MKMT------LAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLHGER-DGHE 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENI 117
           FIP        A   + A  + +    + +  P LVV +    +   A      K    +
Sbjct: 55  FIPA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKV 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++GK++       I         Q     T  ++  +  +           LS  
Sbjct: 109 VAITGSNGKTTTKDMTAAILAT------QYHVVKTPDNYNNEIGVPM-------TILSME 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V  + +     G         +      T +G  HI++ +T+    +AKM + + L
Sbjct: 156 PNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGL 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
             ++   I   D+     ++ RA        + G   +       +    N  + T+  +
Sbjct: 216 -KEDGTFIFNGDEPL---LVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVE-Q 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  F  P+ GE+ V NAL A  +     +    + + L    V   R +++     G 
Sbjct: 271 WPELTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALAHFQVTANRTQWL-IGDVGE 329

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +I  D Y     +++ ++ +     T+GR I V G   +     R +   +A
Sbjct: 330 QILSDVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGDQSRALHAGLA 381


>gi|159900033|ref|YP_001546280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893072|gb|ABX06152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 489

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 86/470 (18%), Positives = 157/470 (33%), Gaps = 46/470 (9%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA---------IAQGAEA- 70
            P       I     DSR      +FVA+ G + DGH FI  A         + +G  A 
Sbjct: 21  LPAALANLPIRSACIDSREASVDGLFVALQGERVDGHDFIAAAAARGVRAALVQRGRLAD 80

Query: 71  ----------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                     +++          A   +   ++ VD T   +   A+R   +    ++ +
Sbjct: 81  PSQLGLDRPFVLLDPDQGQIANEAPANAFF-LISVDQTLTAMHRLATRYRQQQDLVVVGI 139

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +   +  +              +  R            L      
Sbjct: 140 TGSVGKTSTKEVLAAMLAPTMRT-------------HKSPRSYNSENTLPLVVLGIEPEH 186

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +   + G         +   G  TN+G  H++   T +    AK  L  + LP 
Sbjct: 187 QIAVLEMGIYNKGDLALLTTIAQPQIGIVTNVGASHLERMHTIENVAEAKSELV-QALPA 245

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+  DD   +  M++   A      +  +             +         G+ +
Sbjct: 246 DGWAILNYDDQRVRA-MQQVTKAQVFTYGLDPEADLWADNIESRGLDGIGFDAHYRGEQW 304

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G   V+ AL AA + I +G+    +++ L        +   +   + GG   +
Sbjct: 305 HIKLPLIGLHSVHTALAAAAVGIVLGLSWDSLIQGLRS----SAQLRLLSYPAVGGATLI 360

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVT 416
           D  + ++ +  I   N+     GR I VFG   +    D+    ++G  A D+ D   V 
Sbjct: 361 DDTYNASPVSCIAALNLLAELQGRRIAVFGDMAELGPHDESGHRLVGVRAADVVDQLYVV 420

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  R    E I  E+           ++   I      L   D ++V G
Sbjct: 421 GEKARWIGEEAI--EVGLPAEQVHVLPDKAALIAALQSTLQANDYVLVKG 468


>gi|332201095|gb|EGJ15166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 457

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 172/481 (35%), Gaps = 57/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   + +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKLT------IHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +         +     T  ++         + I L   + ++ 
Sbjct: 104 AVTGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMP 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 V      H  D H L  + +      T +G  H+ + + +      KM++ + +
Sbjct: 150 EGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++   D     +++       +V+  G   +   L+    +  K  +T     
Sbjct: 210 --ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANF 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  
Sbjct: 261 LEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEW-KKAANGAD 319

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   
Sbjct: 320 ILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDV 379

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           + T      ED  ++        P          E  ++ E  ++   E L   D +++ 
Sbjct: 380 LDTVIF-YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLK 438

Query: 466 G 466
           G
Sbjct: 439 G 439


>gi|226360234|ref|YP_002778012.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
 gi|226238719|dbj|BAH49067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
          Length = 504

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 94/498 (18%), Positives = 161/498 (32%), Gaps = 65/498 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E++    +  +     ++   V  DSR + AG +F+A+ G + DGH     A+
Sbjct: 4   MTLARIAEIVGG-ELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGARVDGHDHAASAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----------------FAS 107
             GA A++ +    +     +    T         K ++L                  A 
Sbjct: 63  EAGAVAVLAARPVGVPAVVVSPAPGT------GPSKAMALEHDTDGSGAAVLAALAKLAR 116

Query: 108 RLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                       ++ VTG++GK+S    +  + +  G      G  +             
Sbjct: 117 ASVDDLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWT----- 171

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   AL   +  G   + + A   G             G   N+G  H+    ++ 
Sbjct: 172 --------ALRADAGTGFLVLEMSARDRGHIASLAAIAPPKIGVVLNVGTAHLGEFGSRD 223

Query: 225 AYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLK 280
           A   AK  L E L        AI+ ADD     V+  A     RV+ VG           
Sbjct: 224 AIAAAKGELPESLPSADDGGVAILNADDPL---VVAMAPRTSARVVLVGRSESAHVRATD 280

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            V     + + T++           + GE QV NAL AA + +  G D   +   L    
Sbjct: 281 IVLDERARARFTLTTAAGSVPVELAVHGEHQVGNALAAAAVALECGADLDQIARALSAAA 340

Query: 341 VVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGGD 393
            V GR   V     G  +  D Y    +S+   LK + ++       + R   V G   +
Sbjct: 341 AVSGRRMDVRDRPDGVTVVNDSYNANPDSMRAALKALVSMARSGREAARRSWAVLGEMAE 400

Query: 394 RDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRI 446
                      I      LD++ + IV    P     +     ++ G      I   +  
Sbjct: 401 LGPESVVEHDAIGRFAVRLDVSRLIIVGTGRPARAMHQ---GAVMEGSWGEESILVPDIA 457

Query: 447 EAIRTAIEMLNKQDVLVV 464
            A+    + L   D+++V
Sbjct: 458 GAVALLEKELAPGDLVLV 475


>gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
          Length = 468

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 150/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +T   N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGVRARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETDALAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+      A        ++   G+      V  + +  ++ I       D      G
Sbjct: 226 DDAYAGIWRVAATGNRIVDFALHGLGRDTPAA-VTGVLDGSRLAIDTPDGRVDVRLYALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A V   LE    V GR +          G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAACSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|312890789|ref|ZP_07750319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296752|gb|EFQ73891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 433

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 139/377 (36%), Gaps = 25/377 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I  G IF A+ G+K D + F  QA+  GA   V+ +     D++ + +     
Sbjct: 16  ISTDTRKIIPGSIFFALKGDKFDANTFAQQALDAGAAYAVIDNG----DYNVSQK----C 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+    L   A     +     + +TG++GK++    ++ +  +   +    G    
Sbjct: 68  ILVDDVLSCLQNLARYHRKQLNIPFVGLTGSNGKTTTKELIRAVLSQHFNTYATYG---- 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ +   L+   +  +  + + A+     +      +   G  TN+
Sbjct: 124 ------NLNNHIGVPLTI---LAIDQTVEMAVIEMGANHQKEIELLCSIAQPTHGLITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  L++ L   +    +  D     +++  A  A   V   G 
Sbjct: 175 GKAHLEGFGGAEGVKKGKGELYDYLKTSKGVIFVNQDSKVLTDMV--AERALTDVQYYGS 232

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                   ++       ++   ++ + +      L G + + N L A  +     +    
Sbjct: 233 DIGNNISGELLENSPYLKLRWKIKNEAYHTVQSQLTGAYNMDNLLAAICIGHYFKLSPDE 292

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L        R + V T S    I   Y    +S+ + ++NI  + +GR +V+ G  
Sbjct: 293 INTGLSGYQPHNNRSQIVKTASN-TLICDYYNANPSSMFVAIENIGKLPAGRKVVILGDM 351

Query: 392 GDRDQGKRPIMGKIALD 408
            +  +        +   
Sbjct: 352 FELGEESAVEHESVIQK 368


>gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis Bt4]
          Length = 468

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 150/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +T   N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGVRARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETDALAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+      A        ++   G+      V  + +  ++ I       D      G
Sbjct: 226 DDAYAGIWRVAATGNRIVDFALHGLGRDTPAA-VTGVLDGSRLAIDTPDGRVDVRLNALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A V   LE    V GR +          G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAACSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
 gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
          Length = 488

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 98/455 (21%), Positives = 160/455 (35%), Gaps = 44/455 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS------SAYSLQDFS 83
              V++DSR +  G +FV +VG  +DGH +I QA+ QGA  +          A    DF 
Sbjct: 42  FTNVTTDSRTVTDGSLFVPLVGETQDGHKYILQALEQGARVVFADLESYECLAGLFMDFL 101

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGL 142
                +   +VV NT   L   A+    K P+ I + +TG+SGK++    +  +  R   
Sbjct: 102 ENYP-DAVFIVVKNTLTALQCAAAAYVKKFPDLIKIGITGSSGKTTTKELIAAVLSRK-- 158

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                       +   +                  +   V    +  +  G      + +
Sbjct: 159 -----------YTVVMNEGNLNSETGLPLSVFKIRAEHEVGIFEMGMNRKGEIAELANVL 207

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G  HI    ++ A    K ++F      +  A I A D Y+  +   A N
Sbjct: 208 CPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSRFT-ADCVAFIPAADPYADFL---AEN 263

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G  V+  G          V  I N          +    L PLPG     +AL AA L 
Sbjct: 264 CGGTVVRYGVNTD-----PVSRIKNAGLAGTEFLYRQVPILLPLPGAGNFSDALAAASLA 318

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEMILK--NIRTI 379
             +G  +  +   LE +  + GR + +G       +    Y    +S+E  L       I
Sbjct: 319 SYMGFGADDIKAGLESVRPLFGRSQIIG---GPVSVVQDCYNANPDSMEQALDFFASLDI 375

Query: 380 TSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             GR I V G   +     +       + A     + +V      S   E++  E   G 
Sbjct: 376 EPGRKIAVLGDMLELGAESESAHVAAVRSAAASGAVLLVCIGRAVSAAAERLVREDRVGS 435

Query: 437 PGFIEKGNRIEA-IRTAIEM----LNKQDVLVVAG 466
                  +  +A I  A  +    L + DV+++ G
Sbjct: 436 VRVECFADSSDAVISDAAALLCGFLRRGDVVLLKG 470


>gi|325105557|ref|YP_004275211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
 gi|324974405|gb|ADY53389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
          Length = 431

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 134/378 (35%), Gaps = 26/378 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS+D+R +    +F A+ G   D + F  QAIA GA   +V            +  +  
Sbjct: 15  SVSTDTRKVTESCLFFALKGENFDANTFAEQAIALGAAFAIVDK--------QDLPKHPQ 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + VD+  K L   A     +    ++ +TGT+GK++    +  +  +   ++  +G   
Sbjct: 67  FIFVDDVLKTLQDLAHYHRRQLGLPVIGLTGTNGKTTTKELINAVLSQKFKTAATLG--- 123

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +       P+ L   L+      V  V + A+     +          G  TN
Sbjct: 124 -------NLNNHIGVPLTL---LAITPDTEVAIVEMGANHQKEIELLCAIAVPDYGLITN 173

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++     +     K  L++ L        I  D+ + +E+ +    +   V+  G
Sbjct: 174 VGKAHLEGFGGFEGVKKGKGELYDFLSKNGGTVFINRDNLHLQEMAR--SRSFKEVIYYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    K+ A      V  S      +    L G +   N L A  +   +G+ +  
Sbjct: 232 TSSDNYVFGKLIANDPYLTVEWSDGENKDEVQSQLTGIYNFENILAAIAIGKKLGLTTQQ 291

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           + E +        R + + T      +  D Y    +S+ + ++NI  + +   +++ G 
Sbjct: 292 IHEGINSYKPQNNRSQIIKTERN--TVIGDFYNANPSSMAVAIENIARLEADNKVLILGD 349

Query: 391 GGDRDQGKRPIMGKIALD 408
             +  +        +   
Sbjct: 350 MFELGEESGAEHRAVIEK 367


>gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis TXDOH]
          Length = 468

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 150/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +T   N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGERARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETDALAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+      A        ++   G+      V  + +  ++ I       D      G
Sbjct: 226 DDAYAGIWRVAATGNRLVDFALHGLGRDTPAA-VTGVLDGSRLAIDTPDGRVDVRLNALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A V   LE    V GR +          G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAACSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
 gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
          Length = 455

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 138/385 (35%), Gaps = 29/385 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + + + VS +SR+I  G +FVA++G + DGH F+           V   A  L   SA 
Sbjct: 21  PDCEFDGVSINSRNIAEGDLFVALIGERLDGHEFLAD---------VTDRASGLVVSSAD 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P  VV++T   L   A          ++AVTG++GK+SV   +  I         
Sbjct: 72  TDLPLPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKTSVKDLISAIL-------- 123

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G   T+ +   +       P+ L   L          + + AS+     +     K  
Sbjct: 124 --GGFGTVHATKGNLNNHIGVPLTL---LDMQQDSDFAVIEMGASAGSEISYLCSIAKPQ 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+   H++   + +    AK  ++  L   +  AI+  D  +  E M    +  C
Sbjct: 179 ISLINNVQSAHLEGFGSVEGIAAAKGEIYSGL-DTDGTAILNLDQPWQAEWMALIGDREC 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNK-QQVTISV----EGKDFDFLFPLPGEFQVYNALVAAG 320
              SV      I    +  + +   + T+ +      +       +PG   V NAL AA 
Sbjct: 238 ITFSVDDDCADISASDIELMESGCCRFTLHLFTDMSLESQVVNLAIPGRHSVSNALAAAA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A G     ++  LE       R +       G  I   Y  +  S+   +  + +  
Sbjct: 298 CAVAAGASIEQIVSGLEAAQSPARRLQAKDLAQGGQIIDDSYNASPESVRAAIDVLAS-R 356

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKI 405
            GR ++V G   +       +  ++
Sbjct: 357 PGRRVMVLGDMAELGADAEQLHSEV 381


>gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
 gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
          Length = 450

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 150/406 (36%), Gaps = 31/406 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L    F ++++   I          N   +DSR +  G IF A+ G K DG+ F+
Sbjct: 1   MYL-NLTLGSFAKIVDGRIIQGNPLM--PFNAFITDSRKLTKGDIFWALKGEKFDGNTFL 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA A+V    ++ +        NT ++ V+NT   L   A+    +    ++A+
Sbjct: 58  QNAVDAGASALVADKFFADK----IDLKNTALVEVENTLTALQTLAAYHRRRSDLKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+    +  IC+ SG +   +G          +       P  L   L   S  
Sbjct: 114 TGSNGKSTTKQMLLSICKTSGPARANMG----------NLNNQFGLPFSL---LEIDSKD 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + AS  G                TN+   H+ + +  +  +  K  L +  L  
Sbjct: 161 KFGVFELGASKKGDILEIGKPTLPDVAIITNVSAAHLQFFKDLKTVYETKTELID-CLNF 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +  +DDA  K++         + +S G++           I NK+ +    +G+ F
Sbjct: 220 GGILVFNSDDAMLKKLKTEYKG---KAISFGFKSGAD-----LQIKNKKNLEFVYKGEVF 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F      +    NA  AA   IA+G+    + + L     +P R E     +    I  
Sbjct: 272 SFDLQF-EKHNKLNAAAAAAGAIALGLYKDNIEKGLAAYEAMPMRMEERKIGNVDF-ILD 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            Y     S++  +  +    +G  + V G   +           +A
Sbjct: 330 CYNANPASMKNAITLLAKRKAGPRVAVLGDMKELGNCSAKYHAHLA 375


>gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
 gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
          Length = 472

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 158/452 (34%), Gaps = 36/452 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + + + V+ DSR +  G +F+A+ G   DGH F+ +           + A        
Sbjct: 20  YGDFRTDGVTFDSREVGPGDLFIALKGETTDGHRFLDK-----------AFAAGAAGAIV 68

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +   + P + V +T   L    +    +    ++ VTG+ GK+     +     R+    
Sbjct: 69  SDACDGPHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGKTGTKEALYACLDRA---- 124

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIK 203
                   +      +  +  +   +  +L+ + +   +    +  +  G        ++
Sbjct: 125 --------LPGRVHRSVKSYNNHTGVPLSLARMPADTRIGVFEMGMNHSGELAALTRLVR 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +   H  +  ++    +AK  +F+ L P    AII  D  +   ++  A   
Sbjct: 177 PHVAIVTAIAPAHSAFFASEADIADAKGEIFQGLQP-GGVAIIPYDSPHRDRLIAAAKPH 235

Query: 264 GCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             R+L+ G      +H + V  +     +++ +   +  F    PGE  V NA+      
Sbjct: 236 AARILTFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAMAVIAAV 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI------YVD--YAHTSNSLEMILK 374
            A+G D A       ++  +PGR +        G +       +D  Y     S+   +K
Sbjct: 296 WAVGGDLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPASMAATIK 355

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +    + R + V G   +   G       +A  L D  +       SE      A  + 
Sbjct: 356 MLGRERADRRLAVLGEMRELGAGSAGYHADLAGPLRDAGVDFALLVGSEMAA--LANALE 413

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           G   F    +   AI +    +   D +++ G
Sbjct: 414 GRIEFEHVPDADAAIESIEAKIAPGDAILIKG 445


>gi|108762254|ref|YP_633747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
 gi|108466134|gb|ABF91319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
          Length = 466

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 162/441 (36%), Gaps = 34/441 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +  G +FVA+VG + D H F+  A     +     +  +       +     +
Sbjct: 30  VCTDTRALTPGCLFVALVGERFDAHAFVDAAA----KGGAAGAVVARGRPLPALPDGLTL 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             VD+T + L         +    + AV G++GK++    V  I    G +    G  + 
Sbjct: 86  YEVDDTLRALGALGRHHRQRFRIPVCAVGGSNGKTTTKEMVGAILATRGPALKTEGNLNN 145

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211
                          I +   L  L  + V  V     +   +  RL   ++  AG  T 
Sbjct: 146 --------------EIGVPLTLFRLEPRHVAAVIEVGMNQPGEIERLARVVQPDAGVITV 191

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  +H++   + +    A+  LF+E +   +  ++  DDA    +  +A  +G + L+ G
Sbjct: 192 VQPEHLEGLGSIEGVAAAEGELFQE-MGHGTTIVVNVDDAL---IPAQAERSGAQRLTFG 247

Query: 272 Y-QGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +   + L  V  +  +  V T+   G+++       G     NA  A  + +A+G   
Sbjct: 248 RAEHADVRLADVKTLGREGMVATVRHLGREWPVRLHFVGPHNAQNATAAFAVALALGYTP 307

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS--GRIIV 386
              +  LE       R   V     G  +  D Y     S++  L+ + T+    GR +V
Sbjct: 308 EECVRGLESARPYSRRLNVVD-GQHGVTVIDDCYNANPASMDAALETLGTLVPASGRAVV 366

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V G   +   G+     ++   +   A +     PRS       A +      F +    
Sbjct: 367 VLGDMLELGPGELEEHARLGGQIPSHAALAAFFGPRSLK-GWEAASMGESAAHFTDVEPL 425

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
              +      L + DV++V G
Sbjct: 426 ---MAWLAPRLREGDVVLVKG 443


>gi|149910623|ref|ZP_01899261.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
 gi|149806351|gb|EDM66326.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
          Length = 478

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 132/395 (33%), Gaps = 27/395 (6%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  +  I  VS+D+R I+AG +F+A+ G+  D + F+                      +
Sbjct: 18  QGDDVVITAVSTDTRTIKAGDLFIALSGDNFDANRFVAT---------AAEEGAIAAIVT 68

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                + P ++V ++R  L L    +       + A+TG++GK++    +  I +     
Sbjct: 69  KKQAVDIPQIIVKDSRIALGLLGKMVREHVAPKVAALTGSNGKTTTKEMLAAILKLVAP- 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                  +T  +F  D  +         +    +   G  H    A + GL       + 
Sbjct: 128 -----TLATAGNFNNDIGVPLTLLRLQQQHQFAVMELGANHKKEIAYTTGL-------VL 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+   H++     Q   +AK  +    + ++  A++  DD +    +++    
Sbjct: 176 PDVVLINNVDAAHLEGFGDLQGVASAKSEILSG-VKQQGIAVLNRDDKFYPYWLRKVDAQ 234

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                SV           +   +       +     D      + G   V NAL AA + 
Sbjct: 235 RQVSFSVVDDNADYFAADIEFDNAGNPTFKLCTSNGDCTINLAVAGRHNVANALAAAAIA 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              GID + +   LE +  V GR +      R   I   Y     S++  +  +    S 
Sbjct: 295 SCFGIDISTIKRGLESMVNVQGRLKISQLTPRIRIIDDSYNANIASVKAAINVLTHFPST 354

Query: 383 RIIVVFGCGG--DRDQGKRPIMGKIA-LDLADIAI 414
            ++V+   G            +G  A     D   
Sbjct: 355 NVLVMGDMGELGSSTADMHQQVGHYAQQQQVDHVY 389


>gi|255009968|ref|ZP_05282094.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147761|ref|ZP_07809954.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136528|gb|EFR53888.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 432

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 145/384 (37%), Gaps = 35/384 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  QA+  G    VV  A            N  I
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAAQALKDGCAYAVVDEA------EYAPEDNKHI 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    ++ +TGT+GK++    +  +  ++    +  G    
Sbjct: 70  ILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLAKAHNVLYTEG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L   +   +  + + A+  G  +  +   +   G  TN+
Sbjct: 126 ------NLNNHIGVPMTL---LRLKAEHDLAVIEMGANHPGEIKFLVHIAEPDYGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++ L  K +S   I+ D+ Y  ++ +     G  ++  G
Sbjct: 177 GKAHLEGFGSFEGVIRTKGELYDYLREKDDSTVFIHHDNVYLMDIAR-----GLNLIPYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +        V               +G        L GE+   NAL A  +    G++S
Sbjct: 232 SENSLYVNGHVTGNSPYLTFEWKAGKDGNLHQVQTQLIGEYNFPNALAAVTIGRFFGVES 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           + + E L        R +   T      I   Y     S+   L+N R +T  R +++ G
Sbjct: 292 SKIDEALAGYTPRNNRSQLKKTADN-TLIIDAYNANPTSMMAALQNFRNMTVERKMLILG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIA 413
                    R +  + A +   I 
Sbjct: 351 DM-------RELGAESAAEHHKIV 367


>gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 515

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 88/499 (17%), Positives = 154/499 (30%), Gaps = 56/499 (11%)

Query: 3   LQDLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + +L       L +  LS          + ++ +DSR +Q G ++VA  G   DGH FI 
Sbjct: 1   MIELTAPRIAALTSGRLSRTVADELRINVAQICTDSREVQPGSVYVAKPGEHSDGHTFIE 60

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----I 117
            AI  GA  I+     +            P ++V +  + +   A+ +      N    +
Sbjct: 61  AAIEAGAILIIAEREIADAQGQPF-----PAIIVADAVQAMGDIAAEVVQLIRANGEVTV 115

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TG++GK++    +  I ++ G +   IG  +              +  +L       
Sbjct: 116 LGITGSAGKTTTKDLLAGILRQLGPTVAPIGSYNGEVGVPLTVFQADLTTRFL------- 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + + A+  G  ++    +K   G    +G  H       +    AK  L E L
Sbjct: 169 ------VIEMGATRIGHIEYLAGLVKPDIGVVLGIGSAHAGEFGGVENIAQAKGELVEAL 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTI 293
            P  +  +   D      V   A      VL  G +G    +         +      T 
Sbjct: 223 SPTGTAVLNLGD----GRVSAMASRTVAPVLWFGEEGLRIPEGQTSVLAGNVQVGSNATP 278

Query: 294 SV-----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           S      +G  +     L G   V N L AA    A G D   +   L+           
Sbjct: 279 SFDLRFPDGSSWPIRSGLIGIHHVNNLLAAAAAAWAAGADGETIARGLDGQGPKSRWRME 338

Query: 349 VGTNSRGGRIYVD-YAHTSNSLEMIL------------KNIRTITSGRIIVVFGCGGDRD 395
               + G  +  D Y    +S+   L            +N + +   R   V G      
Sbjct: 339 RSERADGVTVINDAYNANPDSMRAALRVLAELGRGGADENGKILPQRRTWAVLGPMFQLG 398

Query: 396 QGKRPIMGKIALDLADIAI----VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
                    +   +  + I    V     R+     I           +   +   A   
Sbjct: 399 AESIREHNALGQVVVRLNISRLLVIGAEARALHIGAINEG--SWGEESVHVPDLDSAYAL 456

Query: 452 AIEMLNKQDVLVVAGKGHE 470
             E L   D+++    GH+
Sbjct: 457 LQEELKPGDIVLFKS-GHD 474


>gi|289447786|ref|ZP_06437530.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420744|gb|EFD17945.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
          Length = 404

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 127/295 (43%), Gaps = 7/295 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 58  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 114

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 115 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 175 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 234

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M     
Sbjct: 235 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA 294

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNAL 316
               V +      +            QQ T I   G        LPG + V N L
Sbjct: 295 DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349


>gi|168493571|ref|ZP_02717714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576262|gb|EDT96790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|332199699|gb|EGJ13774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 457

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 82/479 (17%), Positives = 174/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+   + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           T      +D  ++        P          E  ++ E  ++   E L   D +++ G
Sbjct: 382 TVIF-YGQDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439


>gi|225011571|ref|ZP_03702009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
 gi|225004074|gb|EEG42046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
          Length = 437

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 143/382 (37%), Gaps = 44/382 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R ++   +F+A+ G+  +G+L+  +A++ GA +++V     L++  A      
Sbjct: 19  SGISTDTRTLKKDALFLALRGDNFNGNLYAEKALSLGASSVIVDDP-KLKNLGANS---- 73

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGLS 143
             +VV++T K L   A+    +    I+ +TG++GK++    V        +I    G  
Sbjct: 74  --IVVEDTLKTLQELATYHRKQLNTPIIGITGSNGKTTTKELVREVLSQKYKILATKGNL 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  IG   T+                    L       +  + + A+     ++      
Sbjct: 132 NNHIGVPLTL--------------------LELTKEHQIAIIEMGANHLDEIKNLCCISL 171

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN G+ H++           K  L+  L+ ++   +I  DD      +K+  N 
Sbjct: 172 PNWGYITNFGKAHLEGFGGVDGVIKGKSELYNHLIEQQQKILINGDDPLQ---IKQTKNY 228

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                  G +  F    ++       ++ ++   + F     L G + + N   A     
Sbjct: 229 PVSSFGHGKENTF----QISTNEKDDELQLTYNDQIF--TSNLYGAYNLNNIAAAILFGY 282

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              + +  + + ++K      R + +   +    I   Y     S+E  +K  + I + +
Sbjct: 283 IFEVPTKSIQKAIQKYQATNNRSQKIKIKNTSI-ILDAYNANPTSMEHAIKAFKKIATQK 341

Query: 384 IIVVFGCGGDRDQGKRPIMGKI 405
            +++ G   +          +I
Sbjct: 342 SVLIMGDMKELGVESEKEHQQI 363


>gi|327458729|gb|EGF05077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1057]
          Length = 456

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 176/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I+   +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +  +    S    +  P L+VD+        A     K   ++LAV
Sbjct: 56  AT----------AFAHGAAATLSDHPVAEGPYLLVDDVLTAFQCLAQYYLEKRQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A  +++  G       +   C    K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADYKLVRFGPDAD---IFLTCLEERKDSLSFDCNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   +L +   R E+      G  I 
Sbjct: 263 KRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKG 439


>gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
 gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
          Length = 494

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 137/407 (33%), Gaps = 43/407 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR  + G ++VA+ G + DGH F+  A++ GA   +V                 
Sbjct: 28  TGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLAAELGA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V +T   ++  A          ++A+TG++GK++  + V+ +   +  +    G  
Sbjct: 88  SVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVATAGNQ 147

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +      +               L+         V +     G      D ++   G   
Sbjct: 148 NNELGVPKT-------------LLAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVV 194

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   +++    AK  L   L      A + ADD Y+  V + A     RV +V
Sbjct: 195 NVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETV 254

Query: 271 GYQGKFIHL---------KKVCAIHNKQQVTISVEGK-----------------DFDFLF 304
            + G              +        +QV +  +G+                       
Sbjct: 255 LFDGSAAAAERRAQADAAQTARPAVWAEQVELDEQGRPRFRLHAVGFADAPEEETARCAL 314

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   V NA  A  +  A GI  A+  + L       GR E +        +   Y  
Sbjct: 315 TLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGGFTVVNDAYNA 374

Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIAL 407
             +S+   L     +   G+ + V G  G+           +G+ A 
Sbjct: 375 NPDSMRASLATFCALDVPGKHVAVLGDMGELGSYAPACHAGIGEFAA 421


>gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 440

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 143/413 (34%), Gaps = 39/413 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++DL        +    +   Q     +  V  DSR ++AG +FV + G + DGH +I  
Sbjct: 1   MKDLKTDIIANWVKGSVLGSTQ-----VQGVKVDSRAVEAGDLFVCLKGARVDGHDYIED 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            I +GA A++V       D           ++VD+T   L LFA           + +TG
Sbjct: 56  VIGKGAVAVLVDHKIDNLD--------VCQIIVDDTMAALQLFAKAYRDTLNATFIGITG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    +  I  R G S       +T      +         +    +       V
Sbjct: 108 SNGKTSTKDILFSILSRVGNSIATYKNQNTEIGTYLNLFRMNDDTEFGIFEMGLDYVGDV 167

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             ++               I+  AG   +L   H+    + +   + KMR+F+ +  K  
Sbjct: 168 AVMAE-------------CIRPDAGLVMSLAPAHMMNFDSIEHIASEKMRIFDFVTHK-- 212

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                 D ++ +   ++  +      + G+      +    + +N   ++  ++G  +  
Sbjct: 213 ------DLSFYQGDFEQYRSISHGEHTFGFNEDNEWVVSDVSSNN-HGISFKLDGVAYS- 264

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G  Q  N      L   +GID A++ E L  + +   R E V        +   Y
Sbjct: 265 -SNLLGNHQASNCAGVIALLSKLGIDDAVIREGLNHVALTSLRTELV-EKGNALVLLDAY 322

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                S +  L  +      G  + +     +          ++   + D+ I
Sbjct: 323 KSNPISAKYALDLLAHYEYDGDRVAILSDMVELGPESHKAHLEVLDCIQDLNI 375


>gi|160880626|ref|YP_001559594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
 gi|160429292|gb|ABX42855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
          Length = 507

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/488 (17%), Positives = 156/488 (31%), Gaps = 69/488 (14%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R I ++S++S+   +  +FV IVG + D H FI  A  QG    + S      D  A 
Sbjct: 22  NDRTIFKISTNSKVGDSDTLFVPIVGERVDAHDFIADAYRQGIRVTLTSK-----DEIAE 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +   + V++T + L              I+ +TG+ GK++    +            
Sbjct: 77  GTEDMVYIKVNHTVEALQRLGEYHRDHSNVPIIGITGSVGKTTTKEMIAAAFST------ 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
           +     TI +          S + L + +  L       +     S   +  R+  + K 
Sbjct: 131 RSNVLKTIGN--------MNSQVGLPQMMLMLEDTHEVGIIEMGMSEFGEMERIAKVAKP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  HI   +TQ+     K+ +      ++S  ++  DD    E+        
Sbjct: 183 KMAVVTNIGVSHIGQLKTQENIRKEKLNIV-NYFTEDSILLLNGDDQLLLEIYDEYRKDN 241

Query: 265 -------------------------CRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
                                      V + G      I+   +         T   +  
Sbjct: 242 SSVKEKTQNNGSVDLSEMTRRSLNKASVYTFGTNPDCTIYADNIKTDGESTTFTFHYKNG 301

Query: 299 DF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  D    + G+  + NAL A    I +GID     E L++   +  R E    N 
Sbjct: 302 TKEELVDDITLSVLGKHNILNALAAIFFAIQLGIDPLAAKEGLKEYKPIAMRGEIEKVN- 360

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGKIALD 408
            G  I  D Y  + +S++  +  I  +       +            +     +G+    
Sbjct: 361 -GITIIDDTYNASPDSMKGAIHVIMDMPKEHKKFIVFADILELGDISKKCHYEVGEYLAK 419

Query: 409 LADI--------AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNK 458
              I          + +     E+ + I   +         K    R EA +     L K
Sbjct: 420 QCKIEKACGKESTFIDEVITIGEEAKYILDGVRENGEDINTKSFMEREEAFKYIKTNLTK 479

Query: 459 QDVLVVAG 466
           +DV+++ G
Sbjct: 480 RDVILLKG 487


>gi|284042879|ref|YP_003393219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
 gi|283947100|gb|ADB49844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
          Length = 447

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 127/396 (32%), Gaps = 30/396 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            EL   L    +   +  +   S DSR ++ G ++V IV  + DGH +IP A+  GA A 
Sbjct: 6   SELAAHLG-GELVGPDVGVEGASIDSRTLRPGQLYVPIVAER-DGHAYIPAALDAGAPAY 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +                    + V +T   +        G+     + VTG+ GK++   
Sbjct: 64  LTEQE----------PVGGTAIRVGDTAAAMLRLGVLARGRVG-GAIGVTGSVGKTTTKD 112

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +         ++               +  +  + + L   L          V    + 
Sbjct: 113 LLAGCLAARFRTAA--------------SERSFNNELGLPLTLFNAPEAARWAVLEMGAR 158

Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              D  RL  + +   G  T++   H++Y          K  L   L P    A++  DD
Sbjct: 159 RAGDIERLAAVARPEVGIVTSVDMAHLEYMGDLDGVARVKGELVAAL-PASGLAVLNFDD 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + +      +     SVG                + +  +S      +    + G  
Sbjct: 218 PRVRGMAS-LSASPVLGYSVGGDADVRADDVTLDQDLRARFRLSSPWGQAEVRLGVHGLH 276

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           QV NAL AA + +  G+    V   L +    P R E          +   Y     S E
Sbjct: 277 QVPNALAAATVALWCGVPIETVAAALAQSKGSPWRMEVHHMPDGPLLVVDCYNAMPTSTE 336

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             L+++  +   R + + G   +          +IA
Sbjct: 337 AGLRSLAALPGERKLALLGLMAELGDHSESEHRRIA 372


>gi|125717546|ref|YP_001034679.1| D-Ala-D-Ala adding enzyme [Streptococcus sanguinis SK36]
 gi|125497463|gb|ABN44129.1| D-Ala-D-Ala adding enzyme, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 177/479 (36%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +  +    S    +    ++VD+        A     K   ++LAV
Sbjct: 56  AT----------AFAQGAAATLSERPVAEGAYILVDDVLTAFQRLAQYYLQKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSNLAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAI-EMLNKQDVLVVAG 466
           TD     +D E +     EI   G   +  K +     E +  A+ E L   D +++ G
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKG 439


>gi|322384124|ref|ZP_08057842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151204|gb|EFX44513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 455

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/463 (17%), Positives = 159/463 (34%), Gaps = 35/463 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L +         I  VS D+R ++ G +FV + GN  DGH  +             ++A 
Sbjct: 6   LRVNQEHADAISIQGVSIDTRSLRPGNLFVPLPGNHIDGHEHVAA------ALSKEAAAA 59

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
             +        +  ++ VD+  K L   + +   +    I+ +TG++GK++    V  + 
Sbjct: 60  FWKRGYPNPPEDAVLIFVDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVL 119

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                     G T  +     +       P+ L   L       V  + +  S  G  + 
Sbjct: 120 ----------GTTYRVHKTQGNLNNHIGLPLTL---LQIGEDTEVAVIEMGMSGRGEIEL 166

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
             +  +      T +G  H+    +++    AK  +   L       I   D+     V+
Sbjct: 167 LSELAQPDMAIITMIGDAHLLQLGSREEIARAKTEILGGL-QDGGLFISNGDEPLIDFVL 225

Query: 258 KRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                    R +S G +           I N    +  ++  D +F  PL G   V NAL
Sbjct: 226 PEIKKPEEMRRVSFGQKSTNNIYPVDIQIGNDGS-SFRLQDSDTEFYIPLLGLHNVMNAL 284

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A      + +    + + L  + +   R E     S    +   Y  +  + + +L  +
Sbjct: 285 AAVTAGRELEVSDEKIAQGLRDVQLSGMRIEKRKAESGFTVLNDAYNASPAATKAVLSLM 344

Query: 377 RTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           + +       VV       G+ ++     +G IA +LA+   ++           I  E 
Sbjct: 345 KQLKGYRHKYVVLADMLELGELEEQFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEA 404

Query: 433 IHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
               P      F +K     A++  I   + +DV++V A +G 
Sbjct: 405 KARFPLVNTYWFEDKQAMANALKEVI---HPEDVVLVKASRGM 444


>gi|322377427|ref|ZP_08051918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
 gi|321281627|gb|EFX58636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
          Length = 456

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 161/446 (36%), Gaps = 49/446 (10%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
             DSR I AG +FV + G + DGH FI  A   GA   +     +          N P +
Sbjct: 30  EFDSRLIAAGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEIA----------NHPYI 78

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +VD+        A+    K   ++ AVTG++GK++    +  +   S  +    G     
Sbjct: 79  LVDDVLTAFQSLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAHLLSTSYKTYKTQG----- 133

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNL 212
                       + I L   + ++       V      H  D H L  +        T +
Sbjct: 134 ---------NYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLV 184

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+ + + +      KM++ + +       ++   D     +++       +V+  G 
Sbjct: 185 GEAHLAFFKDRSEIAKGKMQIADGM--ASGSLLLAPADP----IVEDYLPTDKKVVRFGQ 238

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +   L+ +  +  K  +T      +     P+ G++   NA++A+ + +  G+    +
Sbjct: 239 GAE---LEIIDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQI 295

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVF 388
            +  + L +   R E+    + G  I  D Y     ++++IL+    I     G+ I V 
Sbjct: 296 RQAFQHLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVL 354

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIE 441
               +       +  ++ L L+   + T      ED  ++        P          E
Sbjct: 355 ADMKELGDQSVQLHNQMILSLSPDVLDTVIF-YGEDIAELAQLASQMFPIGHVYYFKKTE 413

Query: 442 KGNRIEA-IRTAIEMLNKQDVLVVAG 466
             ++ E  ++   E L   D +++ G
Sbjct: 414 DQDQFEDLVKQVKESLGINDQILLKG 439


>gi|153808921|ref|ZP_01961589.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
 gi|149128254|gb|EDM19473.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
          Length = 432

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 151/439 (34%), Gaps = 36/439 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F  +A+  G    ++  A         I  + 
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAGKALEDGCAFAIIDEA------QYAIEGDR 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V++  + L   A+    +    ++ +TGT+GK++    +  +  +          T
Sbjct: 68  RYILVNDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQ----------T 117

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             I     +       P  L   L       +  + + A+  G  +   +  +   G  T
Sbjct: 118 HNILYTQGNLNNHIGVPTTL---LRLKPEHDLAVIEMGANHQGEIKFLCEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L  K  S   I+ D+ Y   + K     G  ++S
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDFLRKKGNSTIFIHHDNPYLMNIAK-----GLNLIS 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G          +        +    E  G+       L GE+   NAL A  +    G+
Sbjct: 230 YGSGEDLYVNGCITGNSPYLALEWKAEKNGEIHRIRTQLIGEYNFPNALAAITIGRFFGV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   + E L        R +   T      I   Y     S+   L+N R +T    +++
Sbjct: 290 EDRKIDEALAGYTPQNNRSQLKETADN-TLIIDAYNANPTSMAAALQNFRNMTVSHKMLI 348

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            G   +          KI        I   D    E    +  +       F    N  E
Sbjct: 349 LGDMRELGTESLNEHQKIVDY-----IKESD---FEKVWLVGEQFASVCHSFKTYANVQE 400

Query: 448 AIRTAIEMLNKQDVLVVAG 466
            I+       K   +++ G
Sbjct: 401 VIKELETNKPKGYTILIKG 419


>gi|253699158|ref|YP_003020347.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sp. M21]
 gi|259509773|sp|C6DZK7|MURC_GEOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251774008|gb|ACT16589.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M21]
          Length = 461

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/431 (20%), Positives = 147/431 (34%), Gaps = 46/431 (10%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           + G    GH    + +A  A+ +V+SSA   +D    + ++  ++ V    + L+     
Sbjct: 49  LGGEIFFGH--AAENVAN-ADVVVISSAV-HEDNPEVVEAHLRLIPVIPRAEMLAELMRM 104

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            YG      +AV GT GK++  S V  I  + G     I PT  I               
Sbjct: 105 KYG------IAVAGTHGKTTTTSMVATILSKGG-----IDPTIVIGGRLNSLGTNARLGQ 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                        V        S  L       +       TN+  DH+D++   +   +
Sbjct: 154 G---------QFLVAEADESDGSFLL-------LSPTIAVVTNIDADHLDFYSGIEEIKD 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHN 287
             +  F   +P    A++  D+    +V+ R      R  S G           V     
Sbjct: 198 TFVE-FINKIPFYGLAVLCLDNGNVADVLPRVKK---RFTSYGLSAQADFRATDVRLSGF 253

Query: 288 KQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                   +G    +  F +PG   V NAL A  + + + I    + E       V  RF
Sbjct: 254 STSFVAHHKGVRLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFGGVGRRF 313

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              G  + G  +  DY H    ++  L   +      R++VVF         +       
Sbjct: 314 HLKG-EANGIMVVDDYGHHPTEIKATLGAAKAGFAENRLVVVFQPHRYSRTKELFEDFVK 372

Query: 406 ALDLADIAIVTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNK 458
           A   AD+ I+TD  P  E P E + AE +      HG        +R +       +L  
Sbjct: 373 AFHDADVLILTDIYPAGEAPIEGVTAEALANRVRRHGQRDVTWISDRDKLCEHLERVLAP 432

Query: 459 QDVLVVAGKGH 469
            D+L+  G G+
Sbjct: 433 GDILLTLGAGN 443


>gi|323527434|ref|YP_004229587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
 gi|323384436|gb|ADX56527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
          Length = 475

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 141/401 (35%), Gaps = 29/401 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G++ D H F+    A+   A++V+               
Sbjct: 31  FERVSTDSRSAGPGDLFVALKGDRFDAHDFLADVAARNVSAVLVAR--------VPDGWT 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V +TR  L   A     K    ++AVTG++GK++V   +  I   +         
Sbjct: 83  VPAVRVADTRAGLGALARGWRRKFGMPLVAVTGSNGKTTVKEMIASIFAAA---VGAAER 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGS 208
            +T  +F  D          L   L  L++     V     +H  +   L  I       
Sbjct: 140 LATAGNFNNDV--------GLPLTLFRLNAAHRLAVVELGMNHPGETSLLAKIAEPTVAV 191

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N  R+H ++  T +A       +   L P E  A+  A+DAY+      A        
Sbjct: 192 VNNAQREHQEFMATVEAVALEHASVIHALKP-EGVAVFPANDAYASIWRVAATGNRIIDF 250

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           ++    +      V    +   ++I            + G+   +NAL A    +A G+ 
Sbjct: 251 ALNTAERATEAA-VTGTFDGGLLSIETPEGALQVSLQVLGDHNAHNALAATSAALAAGVS 309

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
              +   LE    V GR +          G ++  D Y    +S+   +  + +  S R+
Sbjct: 310 LDAIKRGLESFGAVKGRLQVKRAALGTLAGAKVIDDTYNANPDSMRAAIDVLASHASPRV 369

Query: 385 IVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
           +V+   G   D G    R I         D      D  R 
Sbjct: 370 LVMGDMGEVGDNGPEFHREIGAYAKERGVDALYAMGDASRD 410


>gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 149/396 (37%), Gaps = 27/396 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+E++ +S  I    +F+A++G + DGH F  QAIA GA+A++V+          
Sbjct: 19  GMDLIIHEITINSNIIHKQCMFIALIGKRFDGHDFTSQAIAAGAQALLVNH--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            I  + P L+V +TR  L + A  +  K    ++A+TG+SGK+SV      I +  G + 
Sbjct: 70  HILLDVPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSGKTSVKEMTTSILKECGHTI 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G          +       PI L   L          + +  SS G        +  
Sbjct: 130 ATQG----------NFNNMIGVPITL---LRLTKKNNFAIIELGTSSPGELVQLSKIVAA 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H+   ++       K ++F EL       II AD        K      
Sbjct: 177 NVALVNNVYPAHLSGFKSLSKIGKEKGKIFSEL-DLNGTGIINADSHALSLWRKPLKGKS 235

Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+    G       + +  N+ +  +         +  + G   V NAL A+ L  
Sbjct: 236 MWFFSLRTNVGIDFFASNIISEKNRIRFILHTPYGTSPVVLSMLGTHNVANALAASALAF 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G + + V+  LE +  +PGR   +        +   Y     S+   +  + T+   R
Sbjct: 296 SVGANLSEVVYGLENIKTLPGRLFPIILGEGKLLLDDTYNSNVGSMISAIHVLTTMPGYR 355

Query: 384 IIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           I+VV      G  +       +GK+        I+T
Sbjct: 356 ILVVSDMLELGKYKSIKYHCYIGKLIATTNINKILT 391


>gi|319791664|ref|YP_004153304.1| UDP-N-acetylmuramoylalanyL-D-glutamyL-2,
           6-diaminopimelate/D-alanyL-D-alanyl ligase [Variovorax
           paradoxus EPS]
 gi|315594127|gb|ADU35193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus EPS]
          Length = 479

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 159/442 (35%), Gaps = 46/442 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +D+R +  G +FVA+ G + D + F+ QA  +GA A +          +      
Sbjct: 31  IARVHTDTRTLADGDLFVALKGERFDANDFLAQAKEKGAIAAIAHHGLEAAGLAG----- 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              L V ++   L    +    +    ++AVTG++GK++V   +  I             
Sbjct: 86  ---LEVPDSLVALGALGAGWRAQFELPLIAVTGSNGKTTVTQMIAAILVAFRADRA---- 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +T  +F  +  +        A+    +   G+ H    A    +        +      
Sbjct: 139 LATAGNFNNEIGVPLTLLRLRARHQHAVLELGMNHPGEIARLSAIS-------RPTIALV 191

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVL 268
            N  R+H ++  T +A       +F  +LP +  A+    D ++      AH+    R +
Sbjct: 192 NNAQREHQEFMATVEAVAIENAAVFA-VLPDDGTAVFPYGDTFTSLWTDMAHDGGSRRCM 250

Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G  +G  I L+          V +     +FD    + G     NAL A    +A G+
Sbjct: 251 TFGEDEGADISLESAEWKQGAWAVRVRTPLGNFDASLHIAGRHNAGNALAATACALAAGV 310

Query: 328 DSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
               + E L     V GR    E V +N     +  D Y    +S+   +  +  +    
Sbjct: 311 PIDRIAEGLSAFEPVKGRSKASEVVLSNKHVLTLVDDSYNANPDSVIAAIDVLAGLPGPH 370

Query: 384 IIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVT--------------DDNPR-SEDPE 426
           ++V+   G   +R       +G  A      A+ T               DN R   D E
Sbjct: 371 LLVLGDMGEVGNRAPEFHAEVGAWAKRRGIEAVYTLGTETAHTIAAFQDADNGRHFNDYE 430

Query: 427 KIRAEIIHGIP---GFIEKGNR 445
            + A ++  +P     + KG+R
Sbjct: 431 ALHAAVLARLPLVGSVLVKGSR 452


>gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
 gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
          Length = 494

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 138/407 (33%), Gaps = 43/407 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR  + G ++VA+ G + DGH F+  A++ GA   +V                 
Sbjct: 28  TGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLAAELGA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V +T   ++  A          ++A+TG++GK++  + V+ +   +  +    G  
Sbjct: 88  SVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVATAGNQ 147

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +      +               L+         V +     G      D ++   G   
Sbjct: 148 NNELGVPKT-------------LLAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVV 194

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   +++    AK  L   L      A + ADD Y+  V + A     RV +V
Sbjct: 195 NVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETV 254

Query: 271 GYQGKFIHLKKVCAIH---------NKQQVTISVEGK-----------------DFDFLF 304
            + G     ++                +QV +  +G+                       
Sbjct: 255 LFDGSAAAAERRAQADAAEAARPAVWAEQVELDEQGRPRFRLHAVGFADAPEEETARCAL 314

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   V NA  A  +  A GI  A+  + L       GR E +        +   Y  
Sbjct: 315 TLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGGFTVVNDAYNA 374

Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCGGD---RDQGKRPIMGKIAL 407
             +S+   L     +   G+ + V G  G+           +G+ A 
Sbjct: 375 NPDSMRASLATFCALDVPGKHVAVLGDMGELGSYAPACHAGIGEFAA 421


>gi|225857286|ref|YP_002738797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
 gi|225725342|gb|ACO21194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 166/455 (36%), Gaps = 49/455 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + ++ +   DSR I  G +FV + G   DGH FI  A   GA   +            
Sbjct: 21  FADAQLEKAEFDSRLIGTGDLFVPLKGA-LDGHDFIETAFENGAAVTLSEKEV------- 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              SN P ++VD+        AS    K   ++ AVTG++GK++    +  +        
Sbjct: 73  ---SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLST----- 124

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
            +     T  ++         + I L   + ++       V      H  D H L  + +
Sbjct: 125 -RYKTYKTQGNY--------NNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      KM++ +  +   S  +  AD      +++     
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG-MASGSLLLTPADP-----IVEDYLPT 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G   +   L+    +  K  +T      +     P+ G++   NA++A+ + +
Sbjct: 230 DKKVVRFGQGAE---LEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-- 380
             G+    + +  + L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 287 QEGVSEEQIHQAFQGLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPAN 345

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G+ I V     +       +  +I L L+   + T      ED  ++        P  
Sbjct: 346 EGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIF-YGEDIAELAQLASQMFPIG 404

Query: 438 -----GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
                   E  ++ E  ++   E L   D +++ G
Sbjct: 405 HVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439


>gi|332363454|gb|EGJ41237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK355]
          Length = 454

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/482 (19%), Positives = 178/482 (36%), Gaps = 59/482 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +  +    S    +    ++VD+        A     K   ++LAV
Sbjct: 56  AT----------AFAQGAAATLSERPVAEGAYILVDDVLTAFQRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   S  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL---------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 156 ----VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFG---PDTDIFLTRLEERKDSLSFGCNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  G+    + +   +L +   R E+    + G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGVSETAIAQAFSELELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  I+
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANSGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIL 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +  +       A+R ++      D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVRESLTSA---DQILL 437

Query: 465 AG 466
            G
Sbjct: 438 KG 439


>gi|156741088|ref|YP_001431217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232416|gb|ABU57199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 485

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/493 (18%), Positives = 170/493 (34%), Gaps = 54/493 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++L +++     E+  ++   P    +   +E   DSR   +  +FVA+ G + DGH F+
Sbjct: 2   LRLDEVLPGVQEEVNRRIHALPPALMQVAFSEAVIDSRLATSECLFVALRGERVDGHEFL 61

Query: 61  PQA-------------------IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF 101
             A                   + +    +V+    + +           ++ VD+ +  
Sbjct: 62  ADAAARGARGALVRRSKVSSLTLER--PYVVID-PVTGEGLERATPDTMLLIAVDDPQAA 118

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+  A+   G +   ++ +TG+ GK+S       + QRS           T+ S     R
Sbjct: 119 LNRLAAYHRGMYNPVVIGITGSVGKTSTKEVTAGVLQRS---------FRTLKS----PR 165

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                       L   +   V  + +     G   H     +   G  TN+G  H++   
Sbjct: 166 SYNSEATLPIVLLKLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVTNVGPSHLERMG 225

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHL 279
           + +A   AK  L  + LP++  AI+  DD     V   A     R    G          
Sbjct: 226 SIEAIQRAKSEL-PQALPEDGFAILNIDDP---RVRAMAEVTRARPFFYGLDPAADLWAD 281

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                        +  +G       PL G   V+ AL AA   + +G++   ++  L   
Sbjct: 282 AIESRGLQGVSFRVHYQGDGLHLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGLRS- 340

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQ 396
                R   V   ++   I   Y  +  S++  L  +  +  GR I + G   +    ++
Sbjct: 341 EGAQLRLLAVPGINQTTLIDDTYNASPASMQAALNLLAEL-DGRRIAILGDMLELGSIEE 399

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIPG--FIEKGNRIEAIRTAI 453
               ++G  A ++A I I      R      I  E    G+P        +   A   A 
Sbjct: 400 EAHRMVGARAAEVAQILIAVGQRARW-----IANEAQQAGLPADQVYAVDDNDAAAHLAR 454

Query: 454 EMLNKQDVLVVAG 466
            +L   D +++ G
Sbjct: 455 NLLAPGDFVLIKG 467


>gi|255326224|ref|ZP_05367310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296678|gb|EET76009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 539

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/489 (17%), Positives = 154/489 (31%), Gaps = 55/489 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEV-SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L      E     +I      E+   +  ++DSR +Q G +FVA  G   DGH FIP A 
Sbjct: 4   LSAAQIIEATGGTAIGLEGREEQVFADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMAF 63

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAV 120
            +GA   +V      +          P + V +    +   A     +        ++ +
Sbjct: 64  ERGATLALVEREVLDEQGVPY-----PSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGI 118

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I    G +   +G  ++             S  YL          
Sbjct: 119 TGSAGKTTTKDLLAAIFTPEGPTVAPVGSYNSEVGVPLTVFRADESTRYL---------- 168

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A   G  ++  +      G+   +G  H             K  L E + P 
Sbjct: 169 ---VIEMGADHVGNIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPT 225

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----------YQGKFIHLKKVCAIHNKQ 289
            S A + ADD     V++ A  +   +   G           Y+     L          
Sbjct: 226 GSLA-LNADDE---RVLRMASRSVAPITYFGVGEKTGANGQPYERYVAALNLRTTDAGCP 281

Query: 290 QVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + T+ + +G +++    L GE  V+N L AA +    GI    +   L K          
Sbjct: 282 EFTLRLPDGSEYEISSQLIGEHHVHNLLAAATVAYNSGISGEKIARALNKAAAASKWRMA 341

Query: 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---------TSGRIIVVFGCGGDRDQGK 398
               + G  +  D Y     S+   L+ +  +            R   V G   +     
Sbjct: 342 RTDRADGVTVINDAYNANPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDAS 401

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIE 454
                +I   +  + I        E      A  + G       +++     E I  A  
Sbjct: 402 VEEHDRIGRLVVRMNISKLIAVGDETKPTYNAAHLEGSWGNEATWVKTPEEAEQILRA-- 459

Query: 455 MLNKQDVLV 463
            +   D+++
Sbjct: 460 EVRPGDIVL 468


>gi|329895275|ref|ZP_08270917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
 gi|328922397|gb|EGG29740.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
          Length = 449

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 152/442 (34%), Gaps = 38/442 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSRH+Q+G +FVA  G+K DGH ++  A A+GA A +V     ++         
Sbjct: 25  IQGLNFDSRHVQSGDLFVAFKGDKADGHDYVEAARARGAVAALVERWVPVE--------- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              + V++    L+ +A  +        + +TG++GK++V S V  I    G +S   G 
Sbjct: 76  ITQIRVEDCLSALAEWAKSVRQSSAATFVGITGSAGKTTVKSTVAHILSAQGATSATQGN 135

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +             P   +               V + A   G   +    ++      
Sbjct: 136 YNNEIGVPLTLLELGPEDQF-------------AVVEMGARFKGDIAYLCALVEPNVRIL 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++   +       K  +F+ + P +  A++  D  Y      RA         
Sbjct: 183 TAVLPAHMETFGSIDVIAQTKGEIFDGMKPTD-VAVMPGDSPYLSAWQTRAAGKIV-TFG 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    L       +   + +     + + +  L G     N   + G C+A G+  
Sbjct: 241 YSEANDIQILDVSDRGFSGLALRLRTPAGECEVVSGLVGAHNASNIAASVGACLACGMSL 300

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             ++  +  +  V GR   +  + +   +   Y  +  ++   L  +      R+ ++  
Sbjct: 301 DTIVAQVASVQAVQGRLARIILSDKTTLVDDSYNASPEAMRQALAALERSPGARLAILGP 360

Query: 390 C---GGDRDQGKRPIMGKIALDLADIAI--------VTDDNPR-SEDPEKIRAEIIH--G 435
               G + D+  R ++ +      +           +TD   R   D + I  E+     
Sbjct: 361 MAELGVNSDEYHRQVIEQALAGSVNEIWLSGASWPDLTDSRLRYFADTQAIIDELRSVPV 420

Query: 436 IPGFIEKGNRIEAIRTAIEMLN 457
               + K +R   +      L 
Sbjct: 421 FDWILVKASRSARLDRVASHLQ 442


>gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 468

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 149/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A +   LE    V GR +     +    G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|55163150|emb|CAH57483.1| putative UDP-MurNac-tripeptide synthetase [Actinoplanes
           teichomyceticus]
          Length = 298

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 142/303 (46%), Gaps = 18/303 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I+  AG +TN G+DH+D+H T + YF AK RLF+    +    ++  DD     VM    
Sbjct: 1   IRFAAGGYTNFGQDHLDFHPTTEEYFAAKARLFDG---RTEVGVLNHDDP---AVMSLLA 54

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320
                  + G          V      Q+      G    +    LPG   V NAL+A  
Sbjct: 55  PGMVTYSASGNTEATWWASDVRPSDFGQRFVAHGPGGITVETGVALPGLHNVANALLALA 114

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL---EMILKNIR 377
           L +A+GID  +    + +   VPGR E V        +  DYAH  N++      L+ + 
Sbjct: 115 LLVAVGIDPQVAGTGVRECRGVPGRLEQVAAPGEILGVV-DYAHKPNAIVAALAALRELA 173

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-- 435
           +   GR++ V G GGDRD+GKRP+MG+ A   AD+ I+TDDNPR+EDP  +RA +  G  
Sbjct: 174 SARGGRLVCVLGAGGDRDRGKRPLMGEAAARGADLVIITDDNPRTEDPAAVRAAVRRGAE 233

Query: 436 ----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   +E   R  AI  A+ +    DV+ V GKG+E    V NG+     D   +  
Sbjct: 234 EAHTAAKVLEVAGRRAAIDEAVRLAAAGDVIAVLGKGNEQGQEV-NGQVLPFDDRIELAA 292

Query: 492 ILG 494
            LG
Sbjct: 293 ALG 295


>gi|307707460|ref|ZP_07643942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
 gi|307616412|gb|EFN95603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
          Length = 457

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 165/455 (36%), Gaps = 49/455 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + ++ +   DSR I  G +FV + G + DGH FI  A   GA   +     +      
Sbjct: 21  FADAQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIEIAFENGAAVTLSEKKVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P ++VD+        A+    K   ++ AVTG++GK++    +  +   +  + 
Sbjct: 74  ----NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAHLLSTTYKTY 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G                 + I L   + ++       V      H  D H L  +  
Sbjct: 130 KTQG--------------NYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      KM++ +  +   S  +  AD      +++     
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG-MSSNSLLLAPADP-----IVEDYLPT 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G   +   L+    I  K  +T      +     P+ G++   NA++A+ + +
Sbjct: 230 DKKVVRFGQGAE---LEITDLIERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-- 380
             G+    + +  + L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 287 QEGVSEEQIRQAFQNLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPAN 345

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G+ I V     +       +  ++ L L+   + T      ED  ++        P  
Sbjct: 346 EGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIF-YGEDIAELAQLASQMFPIG 404

Query: 438 -----GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
                   E  ++ E  ++   E L   D +++ G
Sbjct: 405 HVYYFKKTEDQDQFEDLVKQVKESLGVNDQILLKG 439


>gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
 gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
          Length = 457

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 160/415 (38%), Gaps = 30/415 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++L  ++  +  +         + R+   V  DSR ++  ++FVAI G   + H FIP 
Sbjct: 1   MKNLTLENIAKACHGTYHGDESKKSREAAGVVIDSRKVEKDYLFVAIDGENVNAHKFIPD 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            I +GA  +V        DF        P ++V++T + L   A          ++ +TG
Sbjct: 61  TIEKGALCVVSHEDLGDTDF--------PYILVESTGQALLDIAKLYRDSFDVTVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  +      +     T+ +F         +   L   +  +     
Sbjct: 113 SVGKTSTKEMIASVVSQ------KYKVHKTLGNF--------NNEWGLPITIFEMDESHE 158

Query: 183 THVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +     +H  +  RL  +        TN+G  H+++ +T++     K ++ ++ +   
Sbjct: 159 VVILEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQD-MKNG 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDF 300
              I+  DD    + M         +       +      V         TI + +G+ F
Sbjct: 218 GSIILNGDDDLLSK-MGPVKGVTPVLFGTNEDCQCYASGIVPMGLKGTACTIHLPDGEAF 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D L P PG   V NAL  A +  A+G+ +  +   +E    +PGR   + T   G  + +
Sbjct: 277 DCLIPTPGAHMVSNALAGAAVGAALGLTADEIKAGIEAHTTLPGRNNIIST---GSLMIL 333

Query: 361 DYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           D  + +N +      ++  +  GR + V G  G+    ++ +  ++    A   I
Sbjct: 334 DDCYNANPVSTKAAIDVLDMAIGRKVAVLGNMGELGNNEKELHREVGEYAAKHGI 388


>gi|148993758|ref|ZP_01823185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|147927714|gb|EDK78738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
          Length = 457

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/483 (17%), Positives = 173/483 (35%), Gaps = 61/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +         +     T  ++         + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLST------RYKTYKTQGNY--------NNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ + +  
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTVIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-- 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                 +   D     +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 210 ASGSLFLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+      G  I 
Sbjct: 263 QVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEW-KKAVNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
           I I        ED  ++        P          E  ++ E  ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAG 466
           + G
Sbjct: 437 LKG 439


>gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 511

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 147/430 (34%), Gaps = 48/430 (11%)

Query: 29  KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +   V  DSR +  G +F+A+ G + DGH F  +A+  GA A++ +    +        
Sbjct: 26  TVTGFVEFDSRKVTPGGLFLALPGARVDGHDFAEKAVESGAVAVLAARPVGVPAIVVEPT 85

Query: 88  SNT------PILVVDN-------TRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVA 130
                      +  ++         + LS  A  +  +       NI+ VTG++GK+S  
Sbjct: 86  GKVEGDGANADIYANDEDGSAAAVIQALSALARAVTQRLAAEDGLNIVGVTGSAGKTSTK 145

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I + +G +    G  +                 YL    + +S++G+ H      
Sbjct: 146 DLIATIFRAAGETVAPPGSFNNEVGLPYTALRCDEHTEYLV---AEMSARGIGH------ 196

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYA 248
                +H         G   N+G  H+    +++    AK  L E L    +   A++ A
Sbjct: 197 ----IRHLTGITAPKVGVVLNVGTAHLGEFGSRENIALAKGELVEALPSAAEGGVAVLNA 252

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKD-FDF 302
           +D++   +  R +       +V  QG     ++           +    +   G      
Sbjct: 253 NDSFVAGMALRTNAKVVYYSAVAKQGSTPPAQYYATDVQLDDVARASFLMHTPGHAPLPV 312

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
              + G  QV NAL AA   I +G+ + LV   L    +       V     G  +  D 
Sbjct: 313 KLQVFGAHQVSNALAAAAAAIELGLSAELVANALSGHRIASEHRMDVRNRRDGVTLIDDS 372

Query: 362 YAHTSNSLEMILKNIRTI----TSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIA 413
           Y    +S+   +  +          R I V       G D     R +  ++A    D  
Sbjct: 373 YNANPDSMRAAIAALAYTATARPDARSIAVLGEMGELGDDALDAHRQLGAELAKYHVDHL 432

Query: 414 IVTDDNPRSE 423
           +    +P + 
Sbjct: 433 VAVGSSPNTR 442


>gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 350

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR ++ G ++VAI G + DGH FI +A+++GA  +V     SL D    +  + P + V 
Sbjct: 6   SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVD----VPPDVPYVRVT 61

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTIS 154
           + R+  S  ++R+YG    ++  V  T    +  S  ++  + + +G+    +      +
Sbjct: 62  SARRAASALSNRVYGFPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSVFNET 121

Query: 155 SFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                   LTT     L +AL  +   G TH  +E SSHG+ QHR   +      FTNL 
Sbjct: 122 GLRTVPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLAIFTNLT 181

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           R+H+D+H + + Y  AK RLF  L  ++  AI+  DD Y+  +   A N    +++ G +
Sbjct: 182 REHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVM---AENCVAPIVTYGVR 238

Query: 274 GKFIH 278
              + 
Sbjct: 239 SGDVR 243



 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 6/110 (5%)

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-----EK 442
               G+RD+GKRP MG IA  LAD  ++T D+  SEDPE+I  EI+ G            
Sbjct: 242 VRGRGERDRGKRPEMGAIAASLADHVLITTDSSYSEDPERIANEILAGAQRVHRARCDVV 301

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            +R +AI  A+   N +DV+++ G+GHE+  +V  G +    D D++RE 
Sbjct: 302 LDRAQAIERAVIEANDEDVILITGRGHESFQVV-GGLRLEQTDADMVREA 350


>gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
 gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
          Length = 476

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/469 (19%), Positives = 163/469 (34%), Gaps = 59/469 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E+ +  +S DSR++    +FV IVG K D H FI QAI  GA A+  S+   +      
Sbjct: 22  EEQVLANISLDSRNMSGLDLFVPIVGEKVDAHRFICQAIGNGAVAVFTSAHRDISQVEKA 81

Query: 86  IRS------------NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           I                  + V++T+  L         +    ++ +TG+ GK++    +
Sbjct: 82  IADWESRGNDGKAARKAAWIAVEDTKAALQSLGKYCRNRLSIPLVGITGSVGKTTTREMI 141

Query: 134 QQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                      +  G S+ Q+G   T+SS                      S   +  + 
Sbjct: 142 AAALSAGYAVYRTPGNSNSQVGVPITMSSIP--------------------SEAEIAVIE 181

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S  G  +       + +   TN+G  HI+   +Q+     K+ + + + P E    +
Sbjct: 182 LGMSEPGEMEKIARVACVDSAVVTNIGIAHIEQLGSQENILREKLHIQDGMNP-EGILFV 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFP 305
             DD    ++         R++  G      +  +   +     V  +V G K       
Sbjct: 241 NGDDPLLADIQAEGGR---RIIRYGMSAGCEYRAEDVRLDEGYPVFTAVHGEKRTPVRLQ 297

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           + G   V NA+ A  +    G+D       L +     GR +  G   +G  I  D Y  
Sbjct: 298 VMGTHMVGNAMAALAVAAEYGVDMEEAARKLGEFGGYKGRQQIHGF--QGMTIIDDSYNA 355

Query: 365 TSNSLEMILKNIRTITSG-RIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +  S++  L+ + ++  G R I V       G D  +  R I   IA    D  ++    
Sbjct: 356 SPVSMKAGLEVLSSMKPGARKIAVLADMKELGPDTVEFHREIGRYIAEHPVDQVLL---- 411

Query: 420 PRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              E    I   +    G   F+  G+  +            D ++  G
Sbjct: 412 -YGELAAAIGEGLREAGGQSPFLLCGSLEQVKEWLKRETKSGDCILFKG 459


>gi|120404499|ref|YP_954328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957317|gb|ABM14322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 526

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 93/470 (19%), Positives = 155/470 (32%), Gaps = 57/470 (12%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ-----------GAEAIVVSSAY 77
           +   V  DSR +  G +F+A+ G + DGH F   A+A            G  A+VV    
Sbjct: 30  VTGTVEFDSRAVTPGGLFLALPGARSDGHDFAATAVAAGAVGVLAARPVGVPAVVVDP-- 87

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA-------VTGTSGKSSVA 130
              D +A   +      VD +   +    +RL       ++A       +TG+SGK+S  
Sbjct: 88  VRPDPAAPGTAGVLEHDVDGSGAAVLAALARLASAVAAELVAGGLTIIGITGSSGKTSTK 147

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +    G      G  +            T S  YL              + + A 
Sbjct: 148 DLIAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRSTDYL-------------VLEMSAR 194

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G                 N+G  H+    +++     K  L  + +P+    I+ ADD
Sbjct: 195 HPGNIAALARIAVPSIAVVLNVGTAHLGEFGSREVIAATKSEL-PQSVPESGVVILNADD 253

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKDFDFLFPLP 307
                V   A     RV+ VG   + + +       +   +   T+     D      + 
Sbjct: 254 P---AVAAMADKTAARVVRVGRGAEALDVCADGVSLDALARPSFTLHTGAADVPVTLAVH 310

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
           G+ QV NAL AA + +  G     V   L     V      V     G  +  D Y    
Sbjct: 311 GDHQVSNALCAAAVALECGATPEQVAAALATAGPVSRHRMQVTAREDGVTVINDAYNANP 370

Query: 367 NSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVT 416
           +S+   LK +  +     + GR   V G   +          +I      LD++ + +V 
Sbjct: 371 DSMRAGLKALAWMSRGGASKGRSWAVLGEMAELGDDAITEHDRIGRLAVRLDVSRLIVVG 430

Query: 417 DDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P S     +   ++ G      I   +   A+      L   DV++V
Sbjct: 431 SGRPMS---AMLHGAVMEGSFGSEAIPVADTDAALEILRAELRPGDVVLV 477


>gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 457

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/467 (17%), Positives = 167/467 (35%), Gaps = 40/467 (8%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   ++  +        +      +S DSR I    +F+AI G   DGH F+ + + +G 
Sbjct: 7   ELKNVLGDIKNLKEGGEDFLNFKNISIDSRTILKDDLFIAIKGKDFDGHSFLSEVLKKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +++V+      +    ++  + P  VV++T +     A     K    I+A+TG+ GK++
Sbjct: 67  KSVVI-----KKGMQKSLPIDFPCWVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKTT 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               + ++ ++ G                                L       V  + + 
Sbjct: 122 TKEMMGEVLKKLGR-------------IKLSYSNFNNEIGVGLTILDTDVEDKVLVLEMG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
               G  ++     +      TN+G  HI    +++    AK  + + L PK    II A
Sbjct: 169 MRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITYAKCEISKFLNPK-GVVIIPA 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +D+  +E +K         + +        +F     +   +N    TIS++   F+   
Sbjct: 228 NDSLLEETLKEFWKGRVIKVELLNIENQNERFKKDDNLRGFYNPSNKTISIQENTFE--I 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLE-HLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
              G     N L A G+   +GID +   + +   L       + V T      IY + Y
Sbjct: 286 SFGGFHNASNFLFAYGVAKELGIDFSSFNKFNFASLGGRNKILKSVKT-----TIYDESY 340

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  S++  +K +      +  +       G + ++  + I   I     +  +   D 
Sbjct: 341 NASPESVKACIKTLLEKPRNQFFIFGSMQELGEESEKYHKEIFNLINNSDIEKCLFICD- 399

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +  E+I A  +     F+   N  +  +   +   K D +++ G
Sbjct: 400 ---KKNERIYANYLKDNKKFLVLNNIKDVPKEINKSTKKGDSILIKG 443


>gi|240168221|ref|ZP_04746880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           kansasii ATCC 12478]
          Length = 524

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 160/519 (30%), Gaps = 87/519 (16%)

Query: 3   LQDLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + DL      +++      I P    +R++   V  DSR I  G +F+A+ G   DGH +
Sbjct: 1   MIDLTVAQIADIVGGTLADISPQDAAQRRVTGTVEFDSRAIGPGGLFLALPGAHVDGHDY 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
                         ++A       A      P +VV    + L+  A     +H  +   
Sbjct: 61  AA-----------SAAAAGAVAVLAARPVGVPAIVV-TPERSLAEGALAGVLEHDADGSG 108

Query: 117 ------------------------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                                   I+ +TG+SGK+S    V  + Q  G+     G  + 
Sbjct: 109 AAVLAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAAVLQPLGVVVAPPGSFNN 168

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                           YL   +S             A   G             G   N+
Sbjct: 169 ELGHPWTVLRAGRDTDYLILEMS-------------ARHPGNIAALAQIATPAIGVVLNV 215

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    +++A    K  L  + +P+    I+ ADD     + +       RV S G 
Sbjct: 216 GTAHLGEFGSREAIARTKSEL-PQAVPQSGVVILNADDPAVAAMAEVTAARVVRV-SRGS 273

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G             + Q T+       +    + G+ QV NAL AA + +  G     V
Sbjct: 274 TGDVWAGPVSLDELARPQFTVHAGATQAEVRLGVYGDHQVSNALCAAAVALECGATLDQV 333

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG--------- 382
              L     V      V T + G  +  D Y    +S+   L+ +  I  G         
Sbjct: 334 ATALGGAGPVSRHRMQVTTRADGVTVIDDAYNANPDSMGAGLQALAWIARGGSGAGSDLA 393

Query: 383 ---RIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIH 434
              R   V G   +          ++      LD++ + +V     RS         ++ 
Sbjct: 394 AKRRSWAVLGEMAELGADAIAEHDRVGRLAVRLDVSRLVVVGTG--RSVSAMH-HGAVLE 450

Query: 435 GI---------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G           G +   +   A+      +   DV+++
Sbjct: 451 GAWGSWGAGADRGTVNVADADAALELLRAEVQPGDVILI 489


>gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei K96243]
 gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
 gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia pseudomallei K96243]
 gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
          Length = 468

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 149/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A +   LE    V GR +     +    G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|282880729|ref|ZP_06289430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305391|gb|EFA97450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 446

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 130/386 (33%), Gaps = 34/386 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR      IF A+ G   +G+ F   A+ +G    V+            I+ +   
Sbjct: 16  VTTDSRDCPKDSIFFALKGTSFNGNEFAGSALEKGCAYAVIDQK------EYQIQQDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++  + L   A+    K    I+ +TGT+GK++    +  +        +  G    
Sbjct: 70  ILVEDCLQTLKQLANYHRRKLGIPIIGITGTNGKTTTKELLATVLAERFNVWYTQG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P  L   L   S   +  V + AS  G  Q  +  ++      TN+
Sbjct: 126 ------NFNNEIGVPKTL---LRLTSEHEIAVVEMGASHPGDIQSLVTVVEPDYALITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           GR H+    + +     K  L++  E+        I  D+ + +E+  +AH      +S 
Sbjct: 177 GRAHLQGFGSFEGVKRTKAELYDYMEVNKPNGKVFINQDNPHLQEMF-QAHCPHVHRISY 235

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-----------GKDFDFLFPLPGEFQVYNALVAA 319
               +     +     N   +T                + ++    L G + + N L A 
Sbjct: 236 SQTQQTGVSYQGKICSNNPFLTFQWRHIPEGETSPNSNQWYEVHTHLVGAYNLDNLLAAI 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   +G+    +   L        R +   T      I   Y     S+E  L N   +
Sbjct: 296 SIGHYLGVQPHEINHALTHYTPSNNRSQLEVTKHNN-LIVDAYNANPTSMEAALVNFAQM 354

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKI 405
                + + G   +  +       KI
Sbjct: 355 QVAPKMAILGDMRELGEVSVAEHQKI 380


>gi|329956058|ref|ZP_08296829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
 gi|328524817|gb|EGF51871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
          Length = 432

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 143/378 (37%), Gaps = 28/378 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   VV  A      +     +T
Sbjct: 14  TGVTTDSRNCPEGSLFIALKGDTFNGNAFAAKALETGSAYAVVDEA------AYAPAGDT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN  + L   A+    +    I+ +TGT+GK++    +  +  +      +    
Sbjct: 68  HYILVDNCLRTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQ------KYNIL 121

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+ +      +           L   +   +  V + AS  G  +  ++  +   G  T
Sbjct: 122 YTLGNLNNPIGVP-------LTLLRLKAEHELGVVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L  +  S   I+ D+ Y  ++       G   ++
Sbjct: 175 NVGKAHLEGFGSFEGVIRTKGELYDYLRRQGNSTIFIHQDNPYLTQIA-----WGLNPVT 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G +        V                G+  +    L G++   NAL A  +    G+
Sbjct: 230 YGEEDNLYINGHVTGNSPYLTFEWKAGKAGERHEVQTQLIGDYNFPNALAAITIGHFFGV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           ++A + + L +      R +   T      I   Y     S+   + N   + +G  +++
Sbjct: 290 EAAKIDKALHEYEPRNNRSQLKKTADN-TLIIDAYNANPTSMLAAISNFHNMQAGGKMLI 348

Query: 388 FGCGGDRDQGKRPIMGKI 405
            G   +  +       KI
Sbjct: 349 LGDMRELGKDSPGEHQKI 366


>gi|260655417|ref|ZP_05860905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629865|gb|EEX48059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 468

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/471 (18%), Positives = 160/471 (33%), Gaps = 43/471 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DL+     ++       P+ +R         DSR ++ G  F A  G   DGHL+I  
Sbjct: 13  LKDLLPNGL-DVTGPDRPLPLTFR--------VDSRAVEPGDGFAAFQGESTDGHLYIES 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+A+GA  ++       +   A        +    +   L+  A     + P+  ++ AV
Sbjct: 64  ALARGASVVLAERGRVSEKLPAQWP-QVTFIFGHRSETALAELARAYLVRLPDLKHVAAV 122

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  SF+ +I   S  +    G  +T+   +            L          
Sbjct: 123 TGSVGKTTTRSFLARIMSASQRTHAASGNYNTLIGCSVAVLSAPFDVQCL---------- 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G     +      A + T +   H++   + Q     K  +F     +
Sbjct: 173 ---VLEMGANHPGEIAQMVSFFPPTAAAITEVAPAHLEGFGSVQGVLREKAGIFGG--GR 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              A++ AD+    E+  + +     V + G  G   F   +       K    +   G 
Sbjct: 228 LKDAVLNADNPLLAELASQINTP---VTTFGRDGSLSFEDDRLEWDEGFKVSARLCYSGD 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G+  +Y    A  L + +G+     +        +PGR E V   +    I
Sbjct: 285 RVPVSVRLSGKHGLYPLCCALALAVRMGVPFRQAVREAVSFESLPGRGEVVRLQNGAFLI 344

Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              Y  +  S+   ++++  +   GR   + G  G+   G      ++            
Sbjct: 345 DESYNASPKSMTAAIQSLGEVQIRGRKFALLGSMGELGAGASAAHQQVMEVARGQG---- 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE--MLNKQDVLVVAG 466
                +      ++   G           E +R A+    L   DVL+V G
Sbjct: 401 ----FDWWGAYGSDWQSGAKATDNLLTDWEEVRRAVAGLNLRSGDVLLVKG 447


>gi|315607153|ref|ZP_07882157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
 gi|315251207|gb|EFU31192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
          Length = 439

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 134/389 (34%), Gaps = 29/389 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF A+ G   DG+ F   A+ +G    V+      ++       N  +
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEG------NGRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN        A     +    ++ +TGT+GK++    +  +    G     +     
Sbjct: 70  ILVDNVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVL---GEKYNVMYTRGN 126

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++                   S      +  V + AS  G  +  +D ++   G  TN+
Sbjct: 127 FNN----------DVGVPKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +    E+   A     R++S G 
Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLESHDGLLFLNESNPDLMEMA--AQRNFGRIISYGR 234

Query: 273 ------QGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                 +G+ I          +Q +    +    ++    L G + + N L A  + +  
Sbjct: 235 DEGGNVEGEVIDCSPFLNFRWRQHLHAGQIPANAYEVETHLIGAYNLDNMLAAIAVGLHF 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+  A +   L        R +   T      I   Y    +S+   + N + + + R +
Sbjct: 295 GVSPAQINHALGHYIPSNNRSQLETTE-HNRLIVDAYNANPSSMAAAIDNFKLMKAERKM 353

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + G   +          K    LA   I
Sbjct: 354 AILGDMLELGAVSDEEHQKTVDALAAAGI 382


>gi|323356555|ref|YP_004222951.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323272926|dbj|BAJ73071.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 470

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/419 (20%), Positives = 147/419 (35%), Gaps = 41/419 (9%)

Query: 6   LIYKDFPELINQLS----IFPMQWRERKINEVS-SDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +I      L + L     +      +  +  +  +DSR I+ G IFVA  G   DGHLF+
Sbjct: 1   MISTSLSHLADALGGRLVVRGDDTPDTLVAGLVDTDSRLIEPGDIFVAKPGETTDGHLFV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----N 116
             A+ +GA   +V                   +VV +    LS  A  +  +  E     
Sbjct: 61  GTAVERGAALAIVERELDDP---------VSQIVVPDAVTALSDLARDVVARVREHGRLR 111

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GK++  + + +I    G +       +            T    +L      
Sbjct: 112 IVGITGSNGKTTTKNLLARILSDEGETVSPRASFNNEVGAPLTMLRVTEDTRFLVSEF-- 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       AS+ G   H    +    G    +G  H       ++ F AK  L   
Sbjct: 170 -----------GASAPGAIAHLAGLVTPDVGVVLMVGMAHAGGFGGIESTFRAKSELV-H 217

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
              +   A++  DD     +   A   G  V   G  +   +    V    +  +  + V
Sbjct: 218 ATREGGLAVLNVDDPRVAAMEPFARERGQDVRWFGRGERAAVRAVDVEVSASGTRADLLV 277

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G+ F     + GE  V NAL A     A+G+ +A  +  LE +  +  R+      S  
Sbjct: 278 DGEPFTLTLRVLGEHHVMNALAALATATALGVPAAEAIARLETVE-IAERWRMQPLGSDR 336

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            RI  D Y  + +S+   L+ +  IT      V   G   +      +G+ A +  D  
Sbjct: 337 VRIINDAYNASPDSMAAALRTLAQITGPGERTVAVLGAMSE------LGEYADEEHDRV 389


>gi|332976288|gb|EGK13148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 463

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 149/442 (33%), Gaps = 34/442 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ VS+D+R +Q   ++V + G + DGH F   A+  GA A + +    L          
Sbjct: 27  VDGVSTDTRTLQRNNLYVPLKGERFDGHAFWMDAVRAGAAAALWNREVPLPKDPP----- 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V++T   L   A+    +    ++ +TG++GK++       I           G 
Sbjct: 82  IPLIQVEDTLIALQELAAGYRRELEVKVVGITGSNGKTTTKDLTAAILATRYRVHRTQGN 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +             P                V  V +  +  G                
Sbjct: 142 LNNHIGLPLTLLSMPPDT-------------EVAVVEMGMNHAGEIARLSKIAAPDLALV 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H+++  ++ A  +AK+ +  E +P     II  D+   +E   R       V+ 
Sbjct: 189 TNIGEAHLEFLGSRGAIADAKLEI-REGMPSTGTLIIDGDEPLLRE---RLAGEERPVIR 244

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           VG+            +  +  +  +    D  F   L G+    NAL+       +G+  
Sbjct: 245 VGFGESNDDRILDLELKGRAGIAFTSSATDTRFETGLMGKHNALNALLGIQAARLLGLTE 304

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVV 387
             + E L+       R E   T S G  +  D Y  +  ++   +  + ++       V+
Sbjct: 305 TGIREGLKGAEGSGRRLE-TSTASNGMLVVDDSYNASPTAVRAAIDWLTSLEDYEEKWVL 363

Query: 388 FGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442
            G   +   +++     +G  A+      + T      E    I        P       
Sbjct: 364 LGDMLELGVQEEALHREVGSYAVQQGIPRVFTL----GERARWISEGARAAAPDLPVTHF 419

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +  EA+ T          ++V
Sbjct: 420 NSVEEAVNTLRRRGGPGVAMLV 441


>gi|294784923|ref|ZP_06750211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486637|gb|EFG33999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
          Length = 607

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 157/412 (38%), Gaps = 46/412 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 173 LKDFSEILKREKLNELIFEEFSKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T   +  ++ V +T   +   A++   K    ++ +TG+
Sbjct: 229 LDKGASLVIADN---------TDIKDKRVIKVTDTIATMQDLATKYRNKLDIQVVGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +         +     T  ++                 L+    +   
Sbjct: 280 NGKTTTKDIVYSLLS------VKAKTLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + + 
Sbjct: 327 VLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKENT- 385

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y  ++          V  +G+ G   H  K     NK      ++GK+++  
Sbjct: 386 -FVCGDDEYLGKL---------DVNKIGFNGNNTHKIKSYDFSNKGS-KFILDGKEYEM- 433

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   IG+    + + L+++ +   RF+ +        I   Y 
Sbjct: 434 -SLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI-GNDIYINDAYN 491

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  S++  +  +  I +    I + G   +  + +      +   L D  I
Sbjct: 492 ASPMSMKAAIDTLNEIYNDKYKIAILGDMLELGENEVDYHMDVLNYLLDKKI 543


>gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 481

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 22/383 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +DSR I AG +FVA+ G + D H F+    + GA A ++S+             N
Sbjct: 32  ITRVGTDSRQIDAGELFVALAGERFDAHDFLSDVASSGAGAALISNKDKC-------PKN 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + +++TR  L   A          +  VTG++GK++V   +  I + +      +G 
Sbjct: 85  LPAVCIEDTRAALGQLAKAWRVTRHIPLALVTGSNGKTTVKEMIASIFKAA------VGE 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
           + T+ +     +    + I L   L  L       V     +H  +   L  I +     
Sbjct: 139 SHTLVT-----KGNLNNDIGLPLTLLKLRPTDQLAVVELGMNHPGETALLADIAQANIAL 193

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N  R+H ++  T  A       +   L P++  A+   D  ++    K A +      
Sbjct: 194 INNAQREHQEFMATVAAVAQEHADVIRAL-PQDGIAVFPGDSEFTDLWRKAAADRKVLDF 252

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +              + N  ++ ++ E           G   V NAL A+ + IA GI 
Sbjct: 253 VLSSTQTNASSAVGGKLLNDGRIEVNTENGSIQIQLNTLGNHNVRNALAASAVAIAAGIS 312

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              + E LE    V GR +    ++    I   Y    +S+   +  ++   +   IV+ 
Sbjct: 313 LKKIQEGLESFQPVNGRMQAKTIDANHTLIDDSYNANPDSVRAAIDALKQSGNNAWIVLG 372

Query: 389 GCGGDRDQGK--RPIMGKIALDL 409
             G   DQG      +G  A + 
Sbjct: 373 DMGEVGDQGPEFHQEVGAYAAEQ 395


>gi|169831592|ref|YP_001717574.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638436|gb|ACA59942.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 455

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 149/407 (36%), Gaps = 42/407 (10%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFV 133
           A  L  +S+ I  + P LV+   R    +  + + G+  H    +AV G  GK++  S V
Sbjct: 64  AAELVVYSSAIPPDNPELVIARKRGLPVIPRAEMLGRLMHQWKGIAVAGAHGKTTTTSLV 123

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             + +R+GL      PT  I                         + G  ++  EA    
Sbjct: 124 AFLLERTGLD-----PTVIIGGEMNGFGN--------------AKAGGGEYLVAEADESD 164

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                L          TN+  DH+DY++T  A   A  R F   +P++  A++  DD + 
Sbjct: 165 GSFSLL---HPSIVIVTNVEDDHLDYYRTVDAIRRA-FREFIFKVPRDGVAVLNYDDPFL 220

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQ 311
           +++   AH     V++ G        L             +    +    F   +PG   
Sbjct: 221 RQM---AHELPFPVITYGCAPDADYRLAGFHLNCAVSSAEVYWRRELLGRFELTIPGRHN 277

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NAL    +   +G++   +   L     V  RFE VG  SRG R+  DYAH    ++ 
Sbjct: 278 LLNALAVVAVGRHLGLEFPEIARALRDFRGVRRRFELVG-ESRGVRVVDDYAHHPTEIKA 336

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------ 425
            L+  R     R+I VF                 A   AD  +++   P  E P      
Sbjct: 337 TLEAARQTRPKRLIAVFQPHRYTRTKFLHAEFGKAFTAADQVLLSRIYPAGEKPIPGVTA 396

Query: 426 EKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             IR EI       P   E+ +  E +     ++ + D+++  G G 
Sbjct: 397 RLIRDEIQKQQRVEPLLFEEQD--ELVAHLASVVREGDLVITLGAGD 441


>gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
 gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
          Length = 468

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 140/403 (34%), Gaps = 27/403 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
               + VS+DSR +  G +FVA+ G + D H F+    A+GA A +VS   +        
Sbjct: 23  NVSFSRVSTDSRSVGEGDLFVALKGERFDAHDFLADVAARGANAALVSREGA-------- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +      
Sbjct: 75  PASLPQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKTTVKEMIASIFAAA---VGI 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               ST  +F  D              L   ++  +  + +  +  G  Q          
Sbjct: 132 DARLSTAGNFNNDIG-------LPLTLLRLSAAHRLAVIELGMNHPGETQTLAKIAAPTV 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +   L P +  A+  ADD Y+      A      
Sbjct: 185 ALVNNAQREHQEFMATVEAVALEHASVIHALAP-DGVAVFPADDKYAGIWRVAATGNAIL 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++           V    +   + I       +      G     NAL AA   +A G
Sbjct: 244 DFALN-DADRSTAAAVTGTMSGGVLAIETPAGRAEVRLQALGAHNARNALAAAAAALASG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           +    +   LE    V GR +          G  +  D Y    +S+   +  +    S 
Sbjct: 303 VALEAIRTGLEAFEPVKGRLQVKRAAVGSLAGAMLIDDTYNANPDSMRAAIDVLAQQASP 362

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
           R++V+   G   D+G    R I         D    T D  R 
Sbjct: 363 RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALYATGDATRD 405


>gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
 gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
          Length = 455

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 144/386 (37%), Gaps = 25/386 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + +    +   +  ++ + +D+R +  G +F+A+VG++ DGH F+ QA A
Sbjct: 1   MIPVTLSTLADAVG-GTLNGADLMVSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQAEA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A+VVS           + S  P ++V++T   L    + L  +     LA+TG+ G
Sbjct: 60  SGAAALVVSRP---------VDSALPQILVEDTLLALGQMGAWLRRELAPRCLAITGSVG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G +    G          +   T   P+ L   L          +
Sbjct: 111 KTSVKEMTAAIFAQVGPTLATRG----------NLNNTIGVPMTL---LELTPEHRFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G  ++        A    N+   H++     +    AK  ++E L  +   AI
Sbjct: 158 ELGANHAGEIRYTSSLALPHAAVINNIRGAHLEGFGGIEGVARAKSEIYEHL-GEAGTAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD ++  +++R  +      S                       +     +     P
Sbjct: 217 VNLDDEWAPWLLERLGDQNRFTYSSRGPADLWASALSRDADGCYHFLLHRGEAEVLVRLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG  QV NAL AA L     +    +   L +   V GR +    +     I   Y   
Sbjct: 277 LPGRHQVDNALAAAALASTAELSLEQIASGLAQAPTVAGRTQMTALSGEVMLIDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG 391
           + S    +  +     G  ++VFG  
Sbjct: 337 AASTMAAIDLMAE-RDGSSLLVFGDM 361


>gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei NCTC 13177]
 gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
 gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
          Length = 468

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 149/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A +   LE    V GR +     +    G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|148984108|ref|ZP_01817403.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
 gi|147923397|gb|EDK74510.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
          Length = 370

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 149/396 (37%), Gaps = 44/396 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA   +               SN P ++VD+        AS    K   ++ AV
Sbjct: 56  ETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++ +  + 
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG-MA 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  ++ AD      +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 211 SGSLLLVPADP-----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCG 391
            D Y     ++++IL+    I     G+ I V    
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADM 357


>gi|172057973|ref|YP_001814433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
 gi|171990494|gb|ACB61416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
          Length = 439

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 169/457 (36%), Gaps = 51/457 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   ++DSR I    +++ I G + DGH FI  A+AQGA A +      L +      
Sbjct: 19  RALRNFATDSRSILTEGLYIPIQGARVDGHTFIEGAVAQGAIATLWKKGIPLPEM----- 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  +L V++  + L + A R   +    ++A+TG++GK+S    ++ + ++S       
Sbjct: 74  -DITVLEVEDPLQALQIIAKRYLQQVAPKVIAITGSNGKTSTKDMIESVLKQS------F 126

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  +F  D  +           L       V  + +  +  G  +   +  +    
Sbjct: 127 RTHKTAGNFNSDIGMP-------LTILMMPIETEVAVLEMGMNGFGDIELLSNLAEPDIA 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H +    +     AK+ +   L P      +  D+    EV           
Sbjct: 180 LVTNIGESHAEQVGGRTGIAQAKLEIRSGLKP-NGHLFVDGDEPLLGEVPAE-------- 230

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +GY     ++ +  A       T   +G  F    P+ G+ QV NA  A     A+G+
Sbjct: 231 -RIGYHATNTYVIE-QAEATFIGTTFKFDGTTFS--IPVLGKHQVRNAAYAIATAKALGL 286

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIV 386
              ++   L  + + P R E +    +   I   Y  +  S+   ++ I T+      +V
Sbjct: 287 TDDVIQAGLNDVQLTPMRMERL-MYGQTAIINDAYNASPTSMNAAIETIATLDGFTNKVV 345

Query: 387 VFGCGGDRDQGKRPIMGKIALDLA---DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           V G   +  Q +R +   +   +A     AI+     R          I  GI     + 
Sbjct: 346 VLGDMYELGQQERLLHASVGKKIALPVSHAILVGGKGRY---------IADGIADPTVQV 396

Query: 444 NRIEAIRTAIEMLNK----QDVLVV-AGKGHETVHIV 475
              + +  A  +L      Q V+++ A +G     I 
Sbjct: 397 QFADTVEEAARLLQPLLGQQTVILLKASRGLALEQIF 433


>gi|256027429|ref|ZP_05441263.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289765392|ref|ZP_06524770.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289716947|gb|EFD80959.1| histidinol-phosphatase [Fusobacterium sp. D11]
          Length = 607

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 156/413 (37%), Gaps = 48/413 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 173 LKDFSEILKREKLNELIFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T   +  ++ V +T   +   A++   K    ++ +TG+
Sbjct: 229 LDKGASLVIADN---------TNIKDKRVVKVTDTIATMQNLATKYRKKLDIQVIGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +               T  ++                 L+    +   
Sbjct: 280 NGKTTTKDIVYSLLSTKAK------TLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  K + 
Sbjct: 327 VLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNT- 385

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +  DD Y  ++          V  VG+ +     ++     +   +  +  +GK+++ 
Sbjct: 386 -FVCGDDEYLGKL---------DVNKVGFNENNDYKIENYEFSNKGSKFVL--DGKEYEM 433

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  + N  +A  L   IG+    + + L+++ +   RF+ +        I   Y
Sbjct: 434 --SLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI-GEDIYINDAY 490

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  S++  +  +  I +    I + G   +  + +      +   L D  I
Sbjct: 491 NASPMSMKAAIDTLNEIYNDKYKIAILGDMLELGENEINYHIDVLNYLLDKKI 543


>gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
          Length = 464

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 153/442 (34%), Gaps = 38/442 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR +  G +FVA+ G + DGH F+             ++A ++   +       P 
Sbjct: 29  VTVDSRAVAPGDLFVAVPGERVDGHDFLTA----------AAAAGAVAALTTRPDGALPC 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +VVD     L   A+ ++ +        + +TG+SGK+S    + Q+   +G +    G 
Sbjct: 79  VVVDEPVAALGRLAAAVHTRLAGGDLVTIGITGSSGKTSTKDLLGQVLATAGATVSPPGS 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                 +L              + + +   G         +   G  
Sbjct: 139 YNNDIGLPLTVLDADEDTRFL-------------VLEMGSRGRGHIARLCRVARPDVGVV 185

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+    +      AK  L E L P E  A++ ADD     V+  A     RV++
Sbjct: 186 LNVGSAHLGEFGSADGIAVAKGELVEAL-PAEGTAVLNADDP---RVIGMAPRTRARVVT 241

Query: 270 VGYQ-GKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   G  +  + V      +   T+   G+       + GE QV NAL AAG  +A G+
Sbjct: 242 TGRSAGADVRAEDVALDEAGRAGFTLVAGGERAAVRLQVVGEHQVANALSAAGAALAAGM 301

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
               V   L            V     G  +  D Y     S+   L  +  + + R + 
Sbjct: 302 APDAVAAALSAAEPRSRWRMEVTRRDDGVTVVNDAYNANPESMRAALAALAGLPARRRVA 361

Query: 387 VFGCGGDRDQGKRPIMGK----IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           V G   +   G      +          D+ +    +        + A    G  G +  
Sbjct: 362 VLGAMAELGPGAADEHERLGRDAVAAGVDLVVAVGPDAVGIADGALAAGAREG-EGAVRV 420

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +R  A     E+L   DV++V
Sbjct: 421 PDRAAARELLTEVLVPGDVVLV 442


>gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
 gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
          Length = 457

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 144/386 (37%), Gaps = 28/386 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 15  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 66

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 67  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
               ++            + L   L  L++     V     +H  +   L  I       
Sbjct: 127 AGNFNN-----------DVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVAL 175

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N  R+H ++  T +A       +   L P +  A+  ADDAY+  + + A      V 
Sbjct: 176 VNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG-IWRVAATGNRIVD 233

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              +         V    +   + I   G   D      GE    NAL A    +A G+ 
Sbjct: 234 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 293

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            A +   LE    V GR +     +    G  +  D Y    +S+   +  +   ++ R+
Sbjct: 294 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 353

Query: 385 IVVFGCGGDRDQGK--RPIMGKIALD 408
           +V+   G   D+G      +G  A +
Sbjct: 354 LVIGEMGEVGDEGPAFHREIGAYARE 379


>gi|88704096|ref|ZP_01101811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
 gi|88701923|gb|EAQ99027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
          Length = 458

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 167/455 (36%), Gaps = 46/455 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +     ++ ++ DSR +  G +FVA+ G + DGH +I  A+A GA A +V        
Sbjct: 17  PYEGAPLAVSGITIDSRAVTPGDLFVALPGERVDGHNYIDAAVANGAIAALVEHP----- 71

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               + ++ P L V +    LS             ++A+TG+ GK++V +  + I  ++G
Sbjct: 72  ----VDADVPCLRVSSCLAALSDIGRASRDFSRSLVIAITGSCGKTTVKNLCRSIFTQAG 127

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV-SVEASSHGLDQHRLD 200
            +    G                 + I +   L+ L  +    +  + A+  G   H   
Sbjct: 128 PTVATAG--------------NYNNEIGVPLTLARLDDETRFAIVEMGATRRGDIAHLCA 173

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +    +  N    H++   +     + K  +F+ L   +  AI+  D  +     +R 
Sbjct: 174 LARPSITTVLNAMEAHLEGFGSVADVADIKAEIFDGL-GAQGTAILNLDQPWVSLWRERI 232

Query: 261 HNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             AG   +S   G +G               + T+ V G++    FPLPG   V NAL A
Sbjct: 233 ARAGADTVSYSLGEEGDITVADLRDLGLQGSEFTLRVHGEEQAVRFPLPGRHSVANALAA 292

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A L  A G+D   ++  LE+     GR            I   Y     S+   +  +  
Sbjct: 293 AALATAAGLDLGTIVTGLEQAEAESGRLRAESLGEDKTLIDDSYNANPGSVRAAIDLLAA 352

Query: 379 ITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                +++   +   G +  +  R +  +         +             I   +   
Sbjct: 353 TAGNSLLILGEMLELGEESAERHREMGARAREQGVTRFV------------GIGDALKPA 400

Query: 436 IPGFIEKGN---RIEAIRTAI-EMLNKQDVLVVAG 466
           +  F   G      +A+  A+ E+L + D L+V G
Sbjct: 401 VETFGSTGQWYPTRDALTAALPELLEQSDTLLVKG 435


>gi|332877391|ref|ZP_08445139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684774|gb|EGJ57623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 432

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 128/377 (33%), Gaps = 28/377 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR    G +F A+ GN  +G+ F  QA+ QG    +V  A            +   
Sbjct: 16  VTTDSRKCPQGALFFALKGNSFNGNAFAAQALEQGCAYAIVDEA------EYAAGGDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++    L   A     +    ++ VTGT+GK++       +  +     +  G    
Sbjct: 70  ILVEDVLTALQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTAAVLSKKHNVLYTQG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P  L   L       +  +   A+  G  +   + +    G  TN+
Sbjct: 126 ------NLNNHIGVPKTL---LELSPDHTIAVIETGANHLGEIKALAEIVDPDFGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++   + +     K  L++ L  K     I  D    K +    H         G 
Sbjct: 177 GMAHLEGFGSFEGVVRTKGELYDYLRAKHGTVFIDHDSEDLKRIAGGVHQIC-----YGS 231

Query: 273 QGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               +   +   +     +        G+  +    L G + + N L AA +    G++ 
Sbjct: 232 PCDEVLSVEGEVLECAPFLKFRWRPAGGEWQEVQTGLIGAYNMQNMLAAATIGRTFGVEV 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   L        R + + T+     +   Y     S+   ++N R +   R +V+ G
Sbjct: 292 DSINRALAAYEPKNNRSQLMETDDNK-LLVDAYNANPTSMRAAIENFRDMKVERRMVILG 350

Query: 390 CGGDRDQGKRPIMGKIA 406
             G+  +        IA
Sbjct: 351 DMGELGESSWKAHQAIA 367


>gi|288926619|ref|ZP_06420534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
 gi|288336588|gb|EFC74959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
          Length = 439

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 133/389 (34%), Gaps = 29/389 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF A+ G   DG+ F   A+ +G    V+      ++       N  +
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEG------NGRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN        A     +    ++ +TGT+GK++    +  +    G     +     
Sbjct: 70  ILVDNVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVL---GEKYNVMYTRGN 126

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++                   S      +  V + AS  G  +  +D ++   G  TN+
Sbjct: 127 FNN----------DVGVPKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L        +   +    E+   A     R++S G 
Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLESHNGLLFLNESNPDLMEMA--AQRNFGRIISYGR 234

Query: 273 ------QGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                 +G+ I          +Q +    +    ++    L G + + N L A  + +  
Sbjct: 235 DEGGNVEGEVIDCSPFLNFRWRQHLHAGQMPANAYEVETHLIGAYNLDNMLAAIAVGLHF 294

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+  A +   L        R +   T      I   Y    +S+   + N + + + R +
Sbjct: 295 GVSPAQINHALGHYIPSNNRSQLETTE-HNRLIVDAYNANPSSMAAAIDNFKLMKAERKM 353

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + G   +          K    LA   I
Sbjct: 354 AILGDMLELGTVSDEEHQKTVDALAAAGI 382


>gi|23335414|ref|ZP_00120650.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|23465917|ref|NP_696520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum NCC2705]
 gi|189439084|ref|YP_001954165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum DJO10A]
 gi|227547592|ref|ZP_03977641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317483518|ref|ZP_07942503.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689471|ref|YP_004209205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|46577072|sp|Q8G4M3|MURE_BIFLO RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|23326625|gb|AAN25156.1| MurE [Bifidobacterium longum NCC2705]
 gi|189427519|gb|ACD97667.1| UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211847|gb|EEI79743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291516694|emb|CBK70310.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bifidobacterium longum
           subsp. longum F8]
 gi|316915042|gb|EFV36479.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320460807|dbj|BAJ71427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 517

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 100/500 (20%), Positives = 187/500 (37%), Gaps = 43/500 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +     ++ D+R +  G + +   G  +    ++      G  A V  + YS    
Sbjct: 34  IASADEPFAGITYDTRKVTPGTL-LCCKGQFK--AEYLNGIDEAGLAAYVAETEYSA--- 87

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQR 139
                + TP L+V++ RK +SL ++  YG +P+N L V G +G       + F Q +   
Sbjct: 88  ----ATATPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGTKGKTTTSYFTQALINA 142

Query: 140 -SGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            SG  +                ++ LTTP  +   + +   +  G+ ++ +E SS     
Sbjct: 143 VSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEVSSQAYKV 202

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            R+ G+     +F N+  DHI    H T + Y   K     +++      ++ AD  ++ 
Sbjct: 203 DRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCK----RQIIVNAKSLVLGADSLHAD 258

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKD---FDFLFPLPG 308
            + + A  AG  V +               +         +  +   D    D+   + G
Sbjct: 259 LLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAHASFHIADGDQALGDYHLSIDG 318

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTS 366
           +F   NA  A  +  A+G+      + L  +  V    R E            VDYAH  
Sbjct: 319 DFNYLNAAAAIAIAHAVGVSLDDA-DALHAIESVRIAGRMEQFRDPQSNTLAIVDYAHNY 377

Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            S+  +L  +         RI +V G  G++   +R  + + A +     I T ++  +E
Sbjct: 378 ASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAAENRIANFIFTAEDTDTE 437

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIV 475
               I  E+   I           +R+ AI  AI       ++ ++L++ GKG+E     
Sbjct: 438 PIIDICMEMQGYITNKDVVSTVISDRLTAITNAIYDARAHADRFNILLIIGKGNERWIKD 497

Query: 476 TNGEKKMSVDCDIIREILGL 495
                    D  ++  + GL
Sbjct: 498 HRKHVPFDGDDHVVERMFGL 517


>gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
 gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
          Length = 468

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 149/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHTLGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A +   LE    V GR +     +    G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
 gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
          Length = 432

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 163/438 (37%), Gaps = 38/438 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+  AG +F+A+ G   +G+ F  QA+  G    +V  A           +N  I
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA------EYAPENNRHI 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    ++ +TGT+GK++    +  +  +S    +  G    
Sbjct: 70  ILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L   +   +  + + A+  G  +  +   +   G  TN+
Sbjct: 126 ------NLNNHIGVPMTL---LRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++ L  K +S   I  D+AY  ++       G  ++  G
Sbjct: 177 GKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIDHDNAYLMDIA-----HGLNLIPYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +        V               +G        L GE+   NAL A  +    G+++
Sbjct: 232 SEDSLYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEA 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + E L        R +   T      I   Y     S+   L+N R +T  + +++ G
Sbjct: 292 GKIDEALAGYTPRNNRSQLKKTADN-TLIIDAYNANPTSMMAALQNFRNMTVKKKMLILG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
                    R +  + A +   I     +    E    +  +     P +    N  E I
Sbjct: 351 DM-------RELGAESAAEHRKIVDFLQECS-FEKVLLVGEQFTATHPPYHTYANAQEVI 402

Query: 450 RTAIEMLNKQD-VLVVAG 466
           +  ++    +D  +++ G
Sbjct: 403 KE-LQTEKPKDYTILIKG 419


>gi|197116890|ref|YP_002137317.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter bemidjiensis Bem]
 gi|226706323|sp|B5EBQ2|MURC_GEOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197086250|gb|ACH37521.1| UDP-N-acetylmuramate--alanine ligase [Geobacter bemidjiensis Bem]
          Length = 461

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/431 (20%), Positives = 146/431 (33%), Gaps = 46/431 (10%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           + G    GH    + +A  A+ +V+SSA    D    + ++  ++ V    + L+     
Sbjct: 49  LGGEIFFGH--AAENVAN-ADVVVISSAV-HDDNPEVVEAHLRLIPVIPRAEMLAELMRM 104

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            YG      +AV GT GK++  S V  I  + G     I PT  I               
Sbjct: 105 KYG------IAVAGTHGKTTTTSMVATILSKGG-----IDPTIVIGGRLNSLGTNARLGQ 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                        V        S  L       +       TN+  DH+D++   +   +
Sbjct: 154 G---------QFLVAEADESDGSFLL-------LSPTIAVVTNIDADHLDFYSGIEEIKD 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHN 287
             +  F   +P    A++  D+    +V+ R      R  S G           V     
Sbjct: 198 TFVE-FINKIPFYGLAVLCLDNGNIADVLPRVKK---RFTSYGMSAQADFRATDVKLSGF 253

Query: 288 KQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                   +G    +  F +PG   V NAL A  + + + I    + E       V  RF
Sbjct: 254 STSFVAHHKGVRLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFGGVGRRF 313

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              G  + G  +  DY H    ++  L   +      R++VVF         +       
Sbjct: 314 HLKG-EANGIMVVDDYGHHPTEIKATLGAAKAGFAENRLVVVFQPHRYSRTKELFEEFVK 372

Query: 406 ALDLADIAIVTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNK 458
           A   AD+ I+TD  P  E P E + AE +      HG        +R +       +L  
Sbjct: 373 AFHDADVLILTDIYPAGEAPIEGVTAEALANRVRRHGQKDVTWISDRDKLCEHLERVLAP 432

Query: 459 QDVLVVAGKGH 469
            D+L+  G G+
Sbjct: 433 GDILLTLGAGN 443


>gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 423

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 145/406 (35%), Gaps = 42/406 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P++  +   ++   DSR +Q G +FVAI GN  DGH F+  A   GA A +V      ++
Sbjct: 2   PVKLSDLFGHKFVIDSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKDTGFEN 61

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      ++V NT +FL   A  +  K    I+ +TG++GK+S    V  +     
Sbjct: 62  ----------QIIVPNTVEFLGQLAKTIVEKFKPKIIGITGSNGKTSTKEIVWSVLSSEI 111

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +    G  ++          +      L   ++                 G  ++    
Sbjct: 112 SAFKNEGNLNSEIGLPLSIINSYRGESVLILEMAQRVV-------------GDIEYLCKI 158

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                G   N+G  H+    + +  F  K ++ E        A++  DD   +       
Sbjct: 159 FPPDIGVLLNVGSAHVGVAGSVENIFKGKWQIVEN----SKEALVNFDDERMR------- 207

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAG 320
               +    G  G    L K     +   +T   EG++F +  P    +    +ALVA G
Sbjct: 208 --CTKCRYFGTTGGDYILSKREYNGSSTILTFEYEGEEFYYQLPGYWTKPMALSALVAFG 265

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     ID      +L     + GRF  V   S+G  I   Y  +  S +  ++ I    
Sbjct: 266 IADM--IDVLFNPLNLANYKPLKGRFN-VHRFSKGYLIDDTYNASYESFKAGIEEILENF 322

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSED 424
                 + G   +  +       K++  L+  D  +V D    S+D
Sbjct: 323 PKPRYAIVGAMKELGEYSTYYHKKLSELLEQLDGVVVYDKEEESKD 368


>gi|296284502|ref|ZP_06862500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 489

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/454 (22%), Positives = 166/454 (36%), Gaps = 38/454 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + + + V  DSR ++ G +FVA+ G   DGH FI +A A GA A +V             
Sbjct: 43  DFQCSGVEMDSRDVRPGDLFVALKGEAMDGHRFIDKAFAAGAAAAIVDRPIDW------- 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P ++V++T   L   A+    +     +AVTG+ GK+ V   +     R+      
Sbjct: 96  ----PHVLVEDTTAALHALAAAARTRGEATRIAVTGSVGKTGVKEAIFSALDRASRGQAH 151

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                ++ S+     +         +A   +   G+ H        G      D ++   
Sbjct: 152 ----RSVRSYNNHVGVPLSVARMSPRARYGVFEMGMNHA-------GEIAPLADHVRPDV 200

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +   HI+   + +A  + K ++F  L P    AII AD    + +   A  AG  
Sbjct: 201 AVITTIAPAHIENLGSLEAIADEKAQIFTGLKP-GGAAIIPADSEQFERLKAHAEAAGAE 259

Query: 267 VLSVG--YQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           V S G     +   L  + A +     VT  ++     +    PGE  + N+L       
Sbjct: 260 VFSFGRADHARVRLLDAIPAANGGASLVTAQIDDTRLCYSVAEPGEHWIANSLAVMACIY 319

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTIT 380
           A+G D       L ++  + GR       + GGR  +    Y     S+   L  +    
Sbjct: 320 AVGGDLGAAGIALGEMGGLKGRGARHAIAAAGGRALLIDESYNANPASMRATLTQLGQTP 379

Query: 381 SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDN--PRSEDPEKIRAEIIH 434
           + R I V G     G    +    ++  I     D A++  D   P         A  + 
Sbjct: 380 ASRRIAVLGAMGELGEFSTRFHEALLEPIEEGQVDYAVLVGDAMEPLVRKMGTAHANGLG 439

Query: 435 GIPGFIEKGNRIEAIRTAIEM--LNKQDVLVVAG 466
             P F       EAI  A+E   LN  D ++V G
Sbjct: 440 NPPAFAHCAGPAEAI-AALEEFGLNAGDAILVKG 472


>gi|283458382|ref|YP_003363006.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
 gi|283134421|dbj|BAI65186.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
          Length = 539

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 144/458 (31%), Gaps = 50/458 (10%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           ++DSR +Q G +FVA  G   DGH FIP A  +GA   +V      +          P +
Sbjct: 33  TTDSREVQTGTLFVAKPGAVTDGHRFIPMAFERGATLALVEREVLDEQGMPY-----PSI 87

Query: 94  VVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            V +    +   A     +        ++ +TG++GK++    +  I    G +   +G 
Sbjct: 88  QVPDVVLAMGDLARYSIEQMRAQGELTVIGITGSAGKTTTKDLLAAIFAPEGPTVAPVGS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            ++             S  YL              + + A   G  ++  +      G+ 
Sbjct: 148 YNSEVGVPLTVFRADESTRYL-------------VIEMGADHVGNIEYLANIAHPDHGAI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
             +G  H             K  L E + P  S A + ADD     +  R+         
Sbjct: 195 LKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLA-LNADDERVLRMASRSVAPITY-FG 252

Query: 270 VGYQGKFI---------HLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAA 319
           VG +              L          + T+ + +G +++    L GE  V+N L AA
Sbjct: 253 VGEKTDANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEISSQLIGEHHVHNLLAAA 312

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            +    GI    +   L K              + G  +  D Y     S+   L+ +  
Sbjct: 313 TIAYNSGISGEKIARALNKAAAASKWRMARTDRADGVTVINDAYNANPESMAAALRTLAQ 372

Query: 379 I---------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +            R   V G   +          +I   +  + I        E      
Sbjct: 373 LGRTVDPATGQPHRTWAVLGAMLELGDASVEEHDRIGRLVVRMNISKLIAVGDETKPIYN 432

Query: 430 AEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           A  + G       +++     E I  A   +   D+++
Sbjct: 433 AAHLEGSWGNEATWVKTPEEAEQILRA--EVRPGDIVL 468


>gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112]
 gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
          Length = 452

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 159/417 (38%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FVAIV    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQDL---------DIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNYLGVPITILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +       N   V I +  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRVTSNSFAVKIRIFDQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  ++N+++A    +A+G++    L++ + +    GRF     N +   +   
Sbjct: 269 YQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      R+I +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLDEFDGKRVIAITSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|297184170|gb|ADI20289.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 424

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 127/383 (33%), Gaps = 47/383 (12%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R I  G +F A+ G   +G+ F  QA+  GA   VV            +  +  
Sbjct: 12  SICTDTRSIVPGSVFFALKGVSFNGNTFALQALEAGAAFAVVDE---------NVGDDER 62

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGLSS 144
           ++ V +    +   A           + +TG++GK++             ++    G  +
Sbjct: 63  LIKVSDVLTAMQGCALDYRRHLNIPTIGLTGSNGKTTTKELFLAVLKTKYKVHATKGNFN 122

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG   TI S  ++  +              +   G  H                  + 
Sbjct: 123 NHIGVPLTILSAPKETEM-------------LIVEMGANHQKEIGQ-------LASIAEP 162

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPAIIYADDAYSKEVMKRAHNA 263
             G  TN G+ H++     +     K  L++ +   +E  A++ ADDA     ++   +A
Sbjct: 163 TLGYITNYGKAHLEGFGGVEGIIKGKSELYDYIAQNEEGVALVNADDA-----IQLEKSA 217

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            CR  + G +        V        +  S+    +     L G F   N   A  L  
Sbjct: 218 ACRRTTFG-KTNAQFTYTVEEKDEFAGIQFSIATASYTIQSNLSGSFNCTNLAAAVALGR 276

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSG 382
              + +  +++ L        R E+  T S    +   Y     S+ + ++N  +    G
Sbjct: 277 YCDVPAPAIVQALTDYLPAMNRVEWRKTPSN-QVLLDAYNANPTSMSLSIENFAKWHKDG 335

Query: 383 RIIVVFGCGGDRDQGKRPIMGKI 405
              +V G   +  +        I
Sbjct: 336 --WLVLGDMFELGEESAAEHRAI 356


>gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
 gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
          Length = 473

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 164/478 (34%), Gaps = 51/478 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   P    +    +   V  DSR +  G +F A  G + DGH +  +
Sbjct: 1   MITLSLAEIAEIVGGQPHDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAQR 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         A      P +VVD+    L   A     +   +++A+TG
Sbjct: 61  -----------AVEAGAAAVLAARPVGVPAIVVDDVVGALGALARAAVERLGTSVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G                        ALS  +    
Sbjct: 110 SAGKTSTKDLIAQLLQRHGPTVWTPG-------------SFNNEIGLPLTALSATAETEH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++  +      G   N+G  H+    +++A   AK  + E L P++ 
Sbjct: 157 LVLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHLGEFGSREAIAQAKGEMVEGL-PEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ-VTISVEGKDF 300
            A++ ADD   + +  R      RVL  G      +  +KV    + +    +       
Sbjct: 216 CAVLNADDPLVRAMASRTK---ARVLLFGEAPEADVRGEKVRMTPDGRPVFELHTPTGCS 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    L GE  V NAL AA +   +G+    + E L +   +      V     G  +  
Sbjct: 273 DVTMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTVVN 332

Query: 361 D-YAHTSNSLEMILKN------IRTITSGRIIVVFGCGG---DRDQGKRPIMGKIA--LD 408
           D Y     S+   L+        R    GR   V G      D    +   +G++A  L+
Sbjct: 333 DAYNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLN 392

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +  V       E           G      +   +   A+      L   DV++V
Sbjct: 393 VSKLVAVGG----REASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 446


>gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
 gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
          Length = 474

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 155/480 (32%), Gaps = 52/480 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ +     P    +   +I+  V  DSR ++AG +F A  G   DGH +   
Sbjct: 1   MIALSLAEIADITGGRPHDIPDPSVRISGPVVIDSRKVEAGSLFAAFAGEHVDGHAYAE- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       A      P +VV +  K L   A  +  +   +++A+TG
Sbjct: 60  ----------RAVAAGAAAVLAARPVGVPAIVVPDVEKALGALARAVVERLGTDVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ Q    + +  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLQSHAPTVWTPGSLNNEIGLPLTALQATAETRHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             + + A   G   +         G   N+G  HI     ++    AK  L E L     
Sbjct: 158 -VLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPAEAD 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ-QVTISVEGK 298
              A++ ADD   + +  R      R +  G  +   +   +V      +   T+     
Sbjct: 217 GGVAVLNADDLLVRAMSARTK---ARTVLFGEAEDADVRATEVRMTPGGRPAFTLHTPTG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+ +  +   L     +      V   + G  I
Sbjct: 274 CSDVTLRLYGEHHVSNALAAAAVAHVLGMSAMEIATALSGAGTLSRWRMEVTERADGVTI 333

Query: 359 YVD-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGGDRDQGKRPIMGKIA----- 406
             D Y     S+   L+ +  +      T GR   V G   +           +      
Sbjct: 334 VNDAYNANPESMRAALRALVAMGGAARATGGRTWAVLGPMAELGDASLAEHDAVGRLAVR 393

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+++ +  V       E           G      +   +   A+      L   DV++V
Sbjct: 394 LNVSKLVAVGG----REASWLQLGAYNEGSWGEESVLVSDAQAAVDLLRSELRPGDVVLV 449


>gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 456

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 147/376 (39%), Gaps = 20/376 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                 + VS+DSR I AG +FVA+ G   DGH ++  A          ++  +      
Sbjct: 16  GANATFSGVSTDSRSIAAGELFVALRGENFDGHDYVAAAK----ARGAAAAIVATDAAEG 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P++ V  TR  L   A+   G+    +LAVTG++GK++    +  I + +    
Sbjct: 72  LQALSLPLVQVAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKEMIASILKAA---- 127

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +     +T  +F  D  L        A   + +   G+ H    A   G+        + 
Sbjct: 128 YGEAVLATQGNFNNDIGLPLTLLRLNATHRAAIIELGMNHPGEIAYLAGIA-------RP 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN  R H+    + +A    K  ++  L  +   A+  ADD ++K  + R+   G
Sbjct: 181 TVALVTNAQRAHLAGMGSLEAIAAEKGSIYTGL-DETGVAVFNADDPWAK--LWRSQCRG 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R+++ G++       K      + ++++       D +  LPG+    NAL AA   +A
Sbjct: 238 LRMMTFGFEQAADVTGKFHLHGLESRLSLFAPDGQADVVLALPGQHNARNALAAATAALA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            GI    V   L     + GR +   T   G  +  D Y    +S+   +  +      +
Sbjct: 298 AGISLTAVQAGLSAFRGLKGRLQR-RTALHGAVLLDDTYNANPDSVRAGIDVLAATIGKK 356

Query: 384 IIVVFGCGGDRDQGKR 399
           I+V+   G   +   +
Sbjct: 357 ILVLGDMGEIGEMSAQ 372


>gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 479

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 86/415 (20%), Positives = 152/415 (36%), Gaps = 29/415 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  Q L   D   +I  +         R +  +S DSR +  G  + AI G+  DGH F+
Sbjct: 1   MSKQPLWTSD--AIIAAMGAAVQGTPARDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA   VV +A   +        + P+L+VD+    L         +    ++AV
Sbjct: 59  EAALKAGAALAVVETAQRGK-----FAPDAPLLLVDDVLDGLRDLGRAARARLDAKVIAV 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    ++ +    G +   +                   P+ LA+  + +   
Sbjct: 114 TGSVGKTSTKEALRGVLGAQGETHASV----------ASFNNHWGVPLTLARCPASVRYA 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  +  G  +  +  ++      T +   H+++    +A  +AK  +F  L P 
Sbjct: 164 ---VFEIGMNHAGEIEPLVKMVRPHLAIITTVEPVHLEFFSGIEAIADAKAEIFSGLEP- 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
              A++  D+   K +   A  AG  R++S G   K    L+ +    +   V  S+ G 
Sbjct: 220 GGIAVLNRDNPMFKRLTASARKAGVERIVSFGVHAKADARLRDIALHADCSAVDASILGH 279

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGR 357
           D  +   +PG     N+L        +G D AL    L ++    GR         +G  
Sbjct: 280 DVTYKLNIPGRHIAMNSLAVLAAADLVGADLALAALALAQVEPAAGRGVRRTLELGQGAA 339

Query: 358 IYVD--YAHTSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +D  Y     S+     +L +      GR I V G   +       +   +A 
Sbjct: 340 TLIDESYNANPASMAAALGVLGSAEISGQGRRIAVLGDMLELGPAGPELHRGLAG 394


>gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 468

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 149/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A +   LE    V GR +     +    G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|307709605|ref|ZP_07646058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
 gi|307619641|gb|EFN98764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
          Length = 457

 Score =  180 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 167/455 (36%), Gaps = 49/455 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + ++ +   DSR I    +FV + G + DGH FI +A   GA   +     +      
Sbjct: 21  FEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHDFIERAFENGAAVTLSEKEVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P ++VD+        A+    K   ++ AVTG++GK++    +  +   +  + 
Sbjct: 74  ----NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDMLANLLSTTYKTY 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G                 + I L   + ++       V      H  D H L  + +
Sbjct: 130 KTQG--------------NYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      KM++ + +   E   ++   D     +++    A
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM--AEGSLLLAPADP----IVEAYLPA 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G   +   L+    +  K  +T      +     P+ G++   NA++A+ + +
Sbjct: 230 DKKVVRFGQGAE---LEITDLVERKDSLTFKTNFLEQALDLPVTGKYNATNAMIASYIAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-- 380
             G+    + +  + L +   R E+    + G  I  D Y     ++++IL+    I   
Sbjct: 287 QEGVSEEQIRQAFQGLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAIPAN 345

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             G+ I V     +       +  ++ L L+   + T      ED  ++        P  
Sbjct: 346 EGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIF-YGEDIAELAQLASQMFPIG 404

Query: 438 -----GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
                   E  ++ E  ++   E L   D +++ G
Sbjct: 405 HVYYFKKTENQDQFEDLVKQVKESLGANDQILLKG 439


>gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 432

 Score =  180 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 164/438 (37%), Gaps = 38/438 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+  AG +F+A+ G   +G+ F  QA+  G    +V  A           +N  I
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA------EYAPENNRHI 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    ++ +TGT+GK++    +  +  +S    +  G    
Sbjct: 70  ILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L   +   +  + + A+  G  +  +   +   G  TN+
Sbjct: 126 ------NLNNHIGVPMTL---LRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++ L  K +S   I+ D+AY  ++       G  ++  G
Sbjct: 177 GKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHDNAYLMDIA-----HGLNLIPYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +        V               +G        L GE+   NAL A  +    G+++
Sbjct: 232 SEDALYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEA 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + E L        R +   T      I   Y     S+   L+N R +T  + +++ G
Sbjct: 292 GKIDEALAGYTPRNNRSQLKKTADN-TLIIDAYNANPTSMMAALQNFRNMTVKKKMLILG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
                    R +  + A +   I     +    E    +  +     P +    N  E I
Sbjct: 351 DM-------RELGAESAAEHRKIVDFLQECS-FEKVLLVGEQFTATHPPYHTYANAQEVI 402

Query: 450 RTAIEMLNKQD-VLVVAG 466
           +  ++    +D  +++ G
Sbjct: 403 KE-LQTEKPKDYTILIKG 419


>gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
 gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
          Length = 468

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 149/406 (36%), Gaps = 29/406 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAH 364
           E    NAL A    +A G+  A +   LE    V GR +     +    G  +  D Y  
Sbjct: 285 EHNARNALAATAAALAAGVPLAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
             +S+   +  +   ++ R++V+   G   D+G      +G  A +
Sbjct: 345 NPDSMRAAIDVLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYARE 390


>gi|224368380|ref|YP_002602543.1| MurF [Desulfobacterium autotrophicum HRM2]
 gi|223691096|gb|ACN14379.1| MurF [Desulfobacterium autotrophicum HRM2]
          Length = 486

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 106/493 (21%), Positives = 168/493 (34%), Gaps = 60/493 (12%)

Query: 12  PELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            ++   L   P     E   + VS+DSR I    +FVA+ G + DGH FI   + +G   
Sbjct: 10  ADIAKALGQGPTHTVTEIVFSGVSTDSRTIGVQDLFVALEGERFDGHTFIADLVKRGVRG 69

Query: 71  IVVSSAYSLQDFSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            VV            I  + P      VDNT   L   A     +    ++A+TG++GK+
Sbjct: 70  FVVKKG-------QKIPKDVPGCLFFSVDNTLTALGDLARFQRLRAGVRVVAITGSNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S      +I    G     +     +++            +                V  
Sbjct: 123 STRKMTGEIF---GRKFNTLTTRGNLNNEIGLPLTLLGLSLD-----------HEWAVVE 168

Query: 188 EASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              +HG + HRL  I     G  TN    H++   T +    AK  L   +      A++
Sbjct: 169 MGMNHGGEIHRLGSIALPDIGVITNTSHCHLEGLGTVEGVARAKAELLPHVRVH-GSAVL 227

Query: 247 YADDAYSKEV--MKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTI-SVEGKDF 300
             DD          RA+ A   ++           +    +         T+ S      
Sbjct: 228 NLDDPRFPIFSAAVRANTAIENIVCFSMDRLNMDCVGASAIADREEGMGFTLVSPSEGTR 287

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +     P  F V NAL AAG  +A GI   ++ + LE     PGR       +    I  
Sbjct: 288 EVFLHTPARFMVSNALAAAGAALAAGISMDVIKQGLEAFEPEPGRMHLEPGFNHTTIIDD 347

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQG---KRPIMGKIALD-------- 408
            Y     S+   L+ +  +T +G  I V G   +   G       MG +A          
Sbjct: 348 TYNANPGSVGAALETLERVTQNGVGIAVLGDMLELGPGTEQFHREMGALAAASGISRLYA 407

Query: 409 ---LADIAI---VTDDNPRSE----DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM 455
              +AD  I   V    P S       ++I A+++   P     + KG+R   +   +  
Sbjct: 408 HGPMADHVIHGAVKAGFPGSAAMTGTRDEIAADLLAHTPENAWILVKGSRGMRLEKIVSQ 467

Query: 456 LNKQDVLVVAGKG 468
           L +     +AG G
Sbjct: 468 LKRTTT--IAGGG 478


>gi|319949798|ref|ZP_08023821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
 gi|319436538|gb|EFV91635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
          Length = 500

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 95/496 (19%), Positives = 164/496 (33%), Gaps = 53/496 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + DL   +   ++              +   V  DSR +  G +F+A+ G + DGH F+ 
Sbjct: 1   MIDLTLGEIAGIVG--GRLVGGDPSTAVTGTVEFDSRRLTPGGLFLALPGERVDGHDFVA 58

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATI------RSNTPILVVDNT-------RKFLSLFAS- 107
           +A+  GA   +V+      D +  +      R    + +  +T          L   A  
Sbjct: 59  RALDAGAAGALVAHEVDGVDGAQIVVPAVDRRETNAMALAADTDGSGAAVLTALGALARA 118

Query: 108 ---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
              RL   H   ++ VTG+SGK+S    +  +   +G      G  +             
Sbjct: 119 SVDRLVADHGLVVVGVTGSSGKTSTKDLIGAVLSAAGTVVAPPGSFNNEIGHPWTALRAD 178

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
               +L   LS             A + G  +          G   N+G  H+    +++
Sbjct: 179 EDTDFLVLELS-------------ARAPGNIRELAALAPPRIGVVLNVGTAHLGEFGSRE 225

Query: 225 AYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK- 281
                K  L E L        A++ ADD     V   A      V++VG  G      + 
Sbjct: 226 VIAATKGELVEALPDAAHGGVAVLNADDD---RVAAMAGRTSAEVVTVGLGGSADVRAEG 282

Query: 282 -VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                  +   T+     + +    + GE QV NAL AA + +A G+D   +   L    
Sbjct: 283 VRLDDEVRASFTLVTPRGEAEVALRVHGEHQVGNALSAAAVGLACGMDVERIAAALGTAE 342

Query: 341 VVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT------SGRIIVVFGCGGD 393
               R   V   + G  +  D Y    +S+   LK++  +         R   V G   +
Sbjct: 343 AASERRMDVRVTADGITVINDSYNANPDSMRAALKSLAVMARSGGGRPRRTWAVLGEMAE 402

Query: 394 RDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
             +        I      LD++ + +V    P+    +    E   G           EA
Sbjct: 403 LGEDAVIEHDLIGRFLVRLDVSQLVVVGLGRPQRAMFQGAIQEGSWG-SEAEHVATAEEA 461

Query: 449 IRTAIEMLNKQDVLVV 464
           +      L   D+++V
Sbjct: 462 VEILDSRLEPGDIVLV 477


>gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 452

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 85/471 (18%), Positives = 163/471 (34%), Gaps = 41/471 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  +D  E  +            KI+ +S++S  I    +FV I+G + D H+FIP 
Sbjct: 1   MENITIQDILEATD--GTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPN 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +G  A +                N P + V +T   +   A+    K    I+ VTG
Sbjct: 59  ALKEG-GACLTQEHTEA-------SGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    +  + +       +     TI +          S + +   L +L S   
Sbjct: 111 SVGKTTTREMIAHVLK------GKYKVFETIGN--------QNSQVGVPLTLDHLTSEDE 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  S  G      + I    G  TN+G  HI+   ++      K+ + +  LP++
Sbjct: 157 IGVLEMGMSEKGQITTLGNIIHPNVGVVTNVGVSHIEMMGSRDNICIEKLDI-QNGLPED 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF 300
               +  D+   ++ +             G+        +K+     +            
Sbjct: 216 GVLFLNGDNDMIRKHIDYVKKPYEF---YGFADDCTYRAEKIREKGGQTLFEFHYGDMKE 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + G+  V NAL A  + +   +  + +   L        R   +  N     I +
Sbjct: 273 PITLNVLGKHNVSNALAAIAIGLRYDVPMSAIKAQLSTFSG--QRQNIIHVND---YILI 327

Query: 361 DYAHT--SNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           D A+    +S++  L  +    T GR I V     +          ++   +A    VTD
Sbjct: 328 DDAYNASPDSMKASLSILSEFKTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTK-VTD 386

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAG 466
                E       E     P    +   +  E I      L K DV+++ G
Sbjct: 387 LFITGELSRHYIEEAWKENPSLHTRAFSSNGELIAFLETYLKKNDVVLIKG 437


>gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 460

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 146/391 (37%), Gaps = 30/391 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I ++S++SR+ ++  +F+AI G   DGH F  Q++  G+ AI+     S+          
Sbjct: 30  IQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVKNGSLAILSEKILSIDH-------- 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V+NT   +   AS +  K     +A+TG+SGK+SV      I  + G        
Sbjct: 82  -PQIIVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSVKEMTHTILSQVG-------- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            STIS+   +N     S   L   L          + + AS  G  +     +       
Sbjct: 133 -STISTKKNNN----NSLGVLLTLLRVNEFHQYVVIEIGASQLGEIKFSSKIVNPDVVLI 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL   H+    +      AK  +F  L  K + A+I  D+   K    +  N   +V  
Sbjct: 188 NNLFASHLKGFGSFSNLSRAKSEIFFGL-SKFNTAVINLDNHDIKHWKHKIRNLS-KVWF 245

Query: 270 VGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +    +   +   +   +  I            L G   + N++ +A L I++G
Sbjct: 246 FSLKKKKKSHFYSNTISEKNFFMKFDIHTPFGIARVSSHLAGLHNISNSIASAALSISVG 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                + + L+  H + GR   V  +S    +   Y     S++  +  +  +   R++V
Sbjct: 306 AKIDQIEKGLKNFHPIDGRMYPVYISSEKIILDDTYNSNFGSMKSAIDVLSKMPGYRVLV 365

Query: 387 VFGC---GGDRDQGKRPIMGKIALDLADIAI 414
           V      G       + I   I     +  I
Sbjct: 366 VGDMLELGQYSSFYHKKISRIIQNKNLNTII 396


>gi|256845956|ref|ZP_05551414.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
 gi|256719515|gb|EEU33070.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
          Length = 607

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 157/412 (38%), Gaps = 46/412 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 173 LKDFSEILKREKLNELIFEEFLKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T   +  ++ V +T   +   A++   K    ++ +TG+
Sbjct: 229 LDKGASLVIADN---------TDIKDKRVIKVTDTIATMQDLATKYRNKLDIQVVGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +         +     T  ++                 L+    +   
Sbjct: 280 NGKTTTKDIVYSLLS------VKAKTLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + + 
Sbjct: 327 VLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKENT- 385

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y  ++          V  VG+ G   H  +     NK      ++GK+++  
Sbjct: 386 -FVCGDDEYLGKL---------DVNKVGFNGNNTHKIESYDFSNKGS-KFILDGKEYEM- 433

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   IG+    + + L+++ +   RF+ +        I   Y 
Sbjct: 434 -SLLGKHNISNTSIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI-GNDIYINDAYN 491

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  S++  +  +  I +    I + G   +  + +      +   L D  I
Sbjct: 492 ASPMSMKAAIDTLNEIYNDKYKIAILGDMLELGENEVDYHMDVLNYLLDKKI 543


>gi|256838742|ref|ZP_05544252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
 gi|256739661|gb|EEU52985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
          Length = 427

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 142/392 (36%), Gaps = 31/392 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +     D+    R+   
Sbjct: 15  QITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNP----DYYIGERT--- 67

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  K L   A          I+ +TGT+GK++    +  +         +     
Sbjct: 68  -ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLST------KFNLLY 120

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F     +           L       +  + + AS  G  +  +D +    G  TN
Sbjct: 121 TEGNFNNHIGVP-------LTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITN 173

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H++   + +     K  L++ +   +    I  ++ Y + + K     G   ++ G
Sbjct: 174 VGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----GIEQITYG 228

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    +V +           +GK       + G + + N L A  +     I +  
Sbjct: 229 NGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAER 288

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   +        R +F  T +    I   Y    +S+++ L N  T+      ++ G  
Sbjct: 289 ISRAIAAYEPTNNRSQFKKTENN-ELIIDAYNANPSSMKVALDNFITMPVQPKAIILGDM 347

Query: 392 GDRDQGKRPIMGKIALD----LADIAIVTDDN 419
            +       +  ++         D   +  ++
Sbjct: 348 RELGPTSDELHAEVVEQIKKGQFDKVFLCGEH 379


>gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 638R]
          Length = 432

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 162/438 (36%), Gaps = 38/438 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+  AG +F+A+ G   +G+ F  QA+  G    +V  A           +N  I
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA------EYAPENNRHI 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    ++ +TGT+GK++    +  +  +S    +  G    
Sbjct: 70  ILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L   +   +  + + A+  G  +  +   +   G  TN+
Sbjct: 126 ------NLNNHIGVPMTL---LRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++ L  K +S   I+ D+AY  ++          ++  G
Sbjct: 177 GKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHDNAYLMDIA-----HDLNLIPYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +        V               +G        L GE+   NAL A  +    G+++
Sbjct: 232 SEDSLYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEA 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + E L        R +   T      I   Y     S+   L+N R +T  + +++ G
Sbjct: 292 GKIDEALAGYTPRNNRSQLKKTADN-TLIIDAYNANPTSMMAALQNFRNMTVEKKMLILG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
              +          KI   L + +         E    +  +     P +    N  E I
Sbjct: 351 DMRELGTESAAEHRKIVDFLQECS--------FEKVLLVGEQFTATHPPYHTYANAQEVI 402

Query: 450 RTAIEMLNKQD-VLVVAG 466
           +  ++    +D  +++ G
Sbjct: 403 KE-LQTEKPKDYTILIKG 419


>gi|289524488|ref|ZP_06441342.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502272|gb|EFD23436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 201

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 8/197 (4%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL GE+ V NAL A+ +  ++  D+ ++ + LE    VPGR E       G    +DYAH
Sbjct: 1   PLLGEYNVLNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFVE-DGPVCIIDYAH 59

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE +L  ++ + +GR+ +VFG GG+R +  RPI+G IA   AD  +VT DNPRSED
Sbjct: 60  TPDALEKVLSTVKPLCNGRLWLVFGHGGERFKENRPILGSIAARFADRIVVTMDNPRSED 119

Query: 425 PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           P  I  +I  GI        +    +R EA+  A++   K DV++V GKG E   I+   
Sbjct: 120 PRDIATQIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTGKGPER-QIIFKD 178

Query: 479 EKKMSVDCDIIREILGL 495
                 D + ++E   L
Sbjct: 179 RTIPYNDFEALKEWCNL 195


>gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
 gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
          Length = 461

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 147/416 (35%), Gaps = 37/416 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     ++   +        +  ++  +  DSR    G +FVA+VG   DGH +     
Sbjct: 1   MLEMTLGKIAKVVGGTVAGDPDIVVDAPAYVDSRQAVPGGLFVAVVGEHVDGHDY----- 55

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA A++ S             +  P +VV +    L   A+ +  +    +LAVTG+ 
Sbjct: 56  AAGAHAVLGSR-----------PTEAPTIVVRDPIPALGKLAAYVVRRLDATVLAVTGSQ 104

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+    ++ +I   +G +    G  +             P   YL              
Sbjct: 105 GKTGTKDYLARILSAAGSTVATSGSFNNELGLPLTVLRAHPETRYL-------------V 151

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A   G  +H  +       +  N+G  HI    ++ +   AK  +   L P E  A
Sbjct: 152 LEMGARRIGHIKHLCEIAPPDVAAVLNVGTAHIGEFGSRDSIAFAKGEIVAALQP-EGTA 210

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL 303
           ++ A D    E+  R      RVL+ G     +  +        +    I  + + +   
Sbjct: 211 VLNAGDPLVAEMTSRTR---ARVLTWGPDDADVSERGSEVDDLGRPSFEIGYDDEWYPVR 267

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
               G  Q  NAL AA + +A+GI  A +   L            V   + G  +  D Y
Sbjct: 268 LQQSGLHQAQNALAAATMALAVGIPLADIAAGLSAATASSPMRMEVHERADGLIVVNDAY 327

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                S+   L+++  I        V   G   + G+    G + +  A   + TD
Sbjct: 328 NANPASVVAALESLAVIGRRRHRRTVAVLGEMLELGRESFDGHVRVGRAAARLGTD 383


>gi|327468991|gb|EGF14463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK330]
          Length = 456

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 180/481 (37%), Gaps = 57/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL   +  E+++  +    Q+    +     DSR I++G +FV + G + DGH FI
Sbjct: 1   MKL-DLY--EIAEVLSAKNDVT-QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +  +    S    +    ++VD+        A     K   ++LAV
Sbjct: 56  AT----------AFAQGAAATLSERPVAEGTYILVDDVLTSFLRLAQYYLEKMQVDVLAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    + Q+   +  +    G  +                  L          
Sbjct: 106 TGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLV--------- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                      H  D H L  + K   G  T +G  H+++  ++      KM++ + L  
Sbjct: 157 -----LEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-R 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   I+ AD     +++     A C+++  G       +        K  ++      +
Sbjct: 211 KDGLLIVPAD-----KIVNEFLPADCKLVRFGPDAD---IFLTRLEERKDSLSFECNFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++AA   +  GI  A + +   +L +   R E+      G  I 
Sbjct: 263 QRIDLPVTGKYNATNAMIAAYAALQEGISEAAIAQAFSELELTRNRTEW-KKAGNGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPTNLGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKIRA---------EIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVA 465
           TD     +D E +           ++++ I    ++ ++ E +  A+ E L   D +++ 
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVLYFIKN--DEKDQFEQLTKAVREKLTPTDQILLK 438

Query: 466 G 466
           G
Sbjct: 439 G 439


>gi|301307831|ref|ZP_07213787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
 gi|300834174|gb|EFK64788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
          Length = 427

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 142/392 (36%), Gaps = 31/392 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +     D+    R+   
Sbjct: 15  QITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNP----DYYIGERT--- 67

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  K L   A          I+ +TGT+GK++    +  +         +     
Sbjct: 68  -ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLST------KFNLLY 120

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F     +           L       +  + + AS  G  +  +D +    G  TN
Sbjct: 121 TEGNFNNHIGVP-------LTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITN 173

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H++   + +     K  L++ +   +    I  ++ Y + + K     G   ++ G
Sbjct: 174 VGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----GIEQITYG 228

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    +V +           +GK       + G + + N L A  +     I +  
Sbjct: 229 NGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAER 288

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   +        R +F  T +    I   Y    +S+++ L N  T+      ++ G  
Sbjct: 289 ISRAIAAYEPTNNRSQFKKTENN-ELIIDAYNANPSSMKVALDNFITMPVQPKAIILGDM 347

Query: 392 GDRDQGKRPIMGKIALD----LADIAIVTDDN 419
            +       +  ++         D   +  ++
Sbjct: 348 RELGPTSDELHAEVVEQIKKGQFDKVFLCGEH 379


>gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
 gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
          Length = 468

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 88/402 (21%), Positives = 143/402 (35%), Gaps = 29/402 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR +  G +FVA+ G + D H F+ +  A+GA A +VS A  L        
Sbjct: 24  VAFARVSTDSRTVGEGDLFVALKGERFDAHDFLAEVAARGASAALVSRAGVL-------- 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P L   +TR  L   A     +    ++AVTG++GK++V   +  +   +     ++
Sbjct: 76  PGLPQLKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKTTVKEMIASVFAAAVGQDARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
              ST  +F  D        I L   L  L+      V     +H  +   L  I     
Sbjct: 136 ---STAGNFNND--------IGLPLTLLRLAPAHRLAVIELGMNHPGETGTLARIAAPTI 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +   L P +  A+  ADD Y+      A      
Sbjct: 185 ALVNNAQREHQEFMATVEAVALEHASVIHALGP-DGVAVFPADDRYAGIWRVAATGNRIV 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++   G+      V        + I       +      G     NAL A    +A G
Sbjct: 244 DFALNDDGR-ATAAAVTGTTQGGVLAIDTPAGRIEVRLRALGAHNARNALAATAAALAAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           ++   +   LE    V GR +       +  G  +  D Y    +S+   +  +    + 
Sbjct: 303 VEPDAIRAGLEAFEPVKGRLQVKRASLASLAGAMLIDDTYNANPDSMRAAIDVLAQCAAP 362

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPR 421
           R++V+   G   D G    R I         D    T +  R
Sbjct: 363 RVLVIGEMGEVGDAGPAFHREIGAYARERGIDALYATGEATR 404


>gi|312132521|ref|YP_003999860.1| mure1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773455|gb|ADQ02943.1| MurE1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 517

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 100/500 (20%), Positives = 185/500 (37%), Gaps = 43/500 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +     ++ D+R +  G + +   G +     ++      G  A V  + YS    
Sbjct: 34  IASADEPFAGITYDTRKVTPGTL-LCCKG-RFK-AEYLNGIDEAGLAAYVAETEYSA--- 87

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQR 139
                + TP L+V++ RK +SL ++  YG +P+N L V G +G       + F Q +   
Sbjct: 88  ----ATATPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGTKGKTTTSYFTQALINA 142

Query: 140 -SGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            SG  +                ++ LTTP  +   + +   +  G+ ++ +E SS     
Sbjct: 143 VSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEVSSQAYKV 202

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            R+ G+     +F N+  DHI    H T + Y   K ++           ++ AD  ++ 
Sbjct: 203 DRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIAN----AKSLVLGADSLHAD 258

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKD---FDFLFPLPG 308
            + + A  AG  V +               +      +  +  +   D    D+   + G
Sbjct: 259 LLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPEHASFHIADGDQALGDYHLSIDG 318

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTS 366
           +F   NA  A  +  A G+        L  +  V    R E            VDYAH  
Sbjct: 319 DFNYLNAAAAIAIAHAAGVSLDDAG-ALHAIESVRIAGRMEQFRDPQSNTLAIVDYAHNY 377

Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            S+  +L  +         RI +V G  G++   +R  + + A +     I T ++  +E
Sbjct: 378 ASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAAENRIANFIFTAEDTDTE 437

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIV 475
               I  E+   I           +R  AI  AI       ++ ++L++ GKG+E     
Sbjct: 438 PFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHADRFNILLIIGKGNERWIKD 497

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D  ++  + GL
Sbjct: 498 HHKHVPFDGDDHVVERMFGL 517


>gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
 gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
          Length = 432

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 162/438 (36%), Gaps = 38/438 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+  AG +F+A+ G   +G+ F  QA+  G    +V  A           +N  I
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA------EYAPENNRHI 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    ++ +TGT+GK++    +  +  +S    +  G    
Sbjct: 70  ILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L   +   +  + + A+  G  +  +   +   G  TN+
Sbjct: 126 ------NLNNHIGVPMTL---LRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++ L  K +S   I+ D+AY  ++          ++  G
Sbjct: 177 GKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHDNAYLMDIA-----HDLNLIPYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            +        V               +G        L GE+   NAL A  +    G+++
Sbjct: 232 SEDSLYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEA 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + E L        R +   T      I   Y     S+   L+N R +T  + +++ G
Sbjct: 292 GKIDEALAGYTPRNNRSQLKKTADN-TLIIDAYNANPTSMMAALQNFRNMTVEKKMLILG 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
              +          KI   L + +         E    +  +     P +    N  E I
Sbjct: 351 DMRELGTESAAEHRKIVDFLQECS--------FEKVLLVGEQFTATHPPYHTYANAQEVI 402

Query: 450 RTAIEMLNKQD-VLVVAG 466
           +  ++    +D  +++ G
Sbjct: 403 KE-LQTEKPKDYTILIKG 419


>gi|84686331|ref|ZP_01014225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665514|gb|EAQ11990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 474

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 159/469 (33%), Gaps = 60/469 (12%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ VS D+R +Q G +FVA+   + DGH F+  A+A+GA A +VS           +
Sbjct: 20  DWTVSGVSIDTRTLQPGDLFVALADVR-DGHDFVKDALAKGAGAAMVSR------IPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           R+  P+LVV++    L    +    +    ++A+TG+ GK+S    +  I  R       
Sbjct: 73  RTTDPLLVVEDVLPALERLGAAGRARTQARVVAITGSVGKTSTKEMLATILDRQARCHA- 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
                           +  +   +   L+ +  +    V     +H G         +  
Sbjct: 132 -------------AEASYNNHWGVPLTLARMPRETDFAVIEIGMNHPGEIAPLTRLARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++  +  +     K  ++E L P    AI+  +   +  ++  A     
Sbjct: 179 VALITTVAAVHLEAFENVEGIAREKAAIYEGLEP-AGVAILPGEIDTTTILLAEADKRAG 237

Query: 266 RVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           RV + G        L  +          I V           PG     NA+   G   A
Sbjct: 238 RVETFGLGAANTLQLTHLDLTDTATVAQIEVGEVTHLVRLATPGRHFAMNAVAVLGAVRA 297

Query: 325 IGIDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
           +G D  L    L       GR      +       G  +  D +     S+   L+ +  
Sbjct: 298 LGGDVTLAARDLTFWTPPAGRGTREFVQLDPVEREGVTLIDDAFNANPTSMAAALEVLAA 357

Query: 379 ---------ITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVTDDNPRSEDP 425
                    I  GR + V G   +    +  +   +A    LD  D              
Sbjct: 358 TKPAHGHGRIARGRRVAVLGDMLELGPDEAALHAGLADLDHLDAIDQVHC---------A 408

Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
             +   +   +P      + EK   + A   A  +++  DVL+V G KG
Sbjct: 409 GPLMHHLWAALPAEKQGRWSEKAEDLAA--EAHNLIDAGDVLLVKGSKG 455


>gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SSC/2]
          Length = 452

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 85/471 (18%), Positives = 163/471 (34%), Gaps = 41/471 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  +D  E  +            KI+ +S++S  I    +FV I+G + D H+FIP 
Sbjct: 1   MENITIQDILEATD--GTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPN 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +G  A +                N P + V +T   +   A+    K    I+ VTG
Sbjct: 59  ALKEG-GACLTQEHTEA-------SGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQG 181
           + GK++    +  + +       +     TI +          S + +   L +L S   
Sbjct: 111 SVGKTTTREMIAHVLK------GKYKVFETIGN--------QNSQVGVPLTLDHLTSEDE 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  S  G      + I    G  TN+G  HI+   ++      K+ + +  LP++
Sbjct: 157 IGVLEMGMSEKGQITTLGNIIHPNVGVVTNVGVSHIEMMGSRDNICIEKLDI-QNGLPED 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF 300
               +  D+   ++ +             G+        +K+     +            
Sbjct: 216 GVLFLNGDNDMIRKHIDYVKKPYEF---YGFAEDCTYRAEKIREKGGQTLFEFHYGDMKE 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + G+  V NAL A  + +   +  + +   L        R   +  N     I +
Sbjct: 273 PITLNVLGKHNVSNALAAIAIGLRYDVPMSAIKAQLSTFSG--QRQNIIHVND---YILI 327

Query: 361 DYAHT--SNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           D A+    +S++  L  +    T GR I V     +          ++   +A    VTD
Sbjct: 328 DDAYNASPDSMKASLSILSEFKTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTK-VTD 386

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAG 466
                E       E     P    +   +  E I      L K DV+++ G
Sbjct: 387 LFITGELSRHYIEEAWKENPSLHTRAFSSNGELIAFLETYLKKNDVVLIKG 437


>gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70]
 gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70s]
 gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis Sweden2]
 gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/150]
          Length = 450

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 160/447 (35%), Gaps = 43/447 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLS--------- 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    F       +   + L+  ++    +    + +  S     ++ L+ I+   G
Sbjct: 128 ---SVYKVFMSPKSYNSQLTLPLSVLMAD-GDEDFLLLEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             T++   H  +   +  Q     K  L E         +I  D ++ +   K+   A  
Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERC----GLQLIPKDSSWFQFFAKKNSAAER 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+  +    + + +    + + V IS    D +     P      N ++A  L    
Sbjct: 240 FSFSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWIT 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            +    + +  + L +   RFE       G R+  D Y  + +++   L  +     G  
Sbjct: 296 NVPMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGK 353

Query: 385 IVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           I+         G   D+    +  K       I  V +   +      I  +    I  +
Sbjct: 354 IIFILGHMAELGRYSDECHIAVARKAVTKAHIIFFVGE---KWFPVRDIVRDADCQIGFY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 ++A++  +    + DV+++ G
Sbjct: 411 SAVSEIMDAVKALV---QQGDVVLLKG 434


>gi|296327768|ref|ZP_06870307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155115|gb|EFG95893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 613

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 153/412 (37%), Gaps = 46/412 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 177 LKDFSEILKREKLNELIFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 232

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +             +  I+ V +T   +   A +   K    ++ +TG+
Sbjct: 233 LDKGASLVIADN---------IDVKDERIIKVSDTIATMQDLAIKYRKKLDIQVVGITGS 283

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +         +     T  ++                 L+    +   
Sbjct: 284 NGKTTTKDIVYSLLS------VKAKTLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 330

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E ++ + + 
Sbjct: 331 VLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVIKENT- 389

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y  ++          V  +G+     + K      + +     ++GK+++  
Sbjct: 390 -FVCGDDEYLAKL---------DVNKIGFNNSNTY-KIESYKFSDKGSKFVLDGKEYEM- 437

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   IG+    +   L+++ +   RF+ +        I   Y 
Sbjct: 438 -SLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISNMRFQEIKI-GEDIYINDAYN 495

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  S++  +  +  I +    + + G   +    +      +   L D  I
Sbjct: 496 ASPTSMKAAIDTLNEIYNDKYKVAILGDMLELGDNEIDYHIDVLNYLLDKKI 547


>gi|237743958|ref|ZP_04574439.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
 gi|229432989|gb|EEO43201.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
          Length = 611

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 156/413 (37%), Gaps = 48/413 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 177 LKDFSEILKREKLNELIFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 232

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T   +  ++ V +T   +   A++   K    ++ +TG+
Sbjct: 233 LDKGASLVIADN---------TNIKDKRVVKVIDTIATMQDLATKYRKKLDIQVIGITGS 283

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +               T  ++                 L+    +   
Sbjct: 284 NGKTTTKDIVYSLLSTKAK------TLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 330

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  K + 
Sbjct: 331 VLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNT- 389

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +  DD Y  ++          V  VG+ +     ++     +   +  +  +GK+++ 
Sbjct: 390 -FVCGDDEYLGKL---------DVNKVGFNENNDYKIESYEFSNKGSKFVL--DGKEYEM 437

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  + N  +A  L   IG+    + + L+++ +   RF+ +        I   Y
Sbjct: 438 --SLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI-GEDIYINDAY 494

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  S++  +  +  I +    I + G   +  + +      +   L D  I
Sbjct: 495 NASPMSMKAAIDTLNEIYNDKYKIAILGDMLELGENEINYHIDVLNYLLDKKI 547


>gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Francisella
           cf. novicida Fx1]
          Length = 453

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 159/417 (38%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FVAIV    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQDL---------DIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNYLGVPITILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +       N   V I V  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRVTSNSFAVKIRVFDQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  ++N+++A    +A+G++    L++ + +    GRF     N +   +   
Sbjct: 269 YQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      +I+ +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLAEFDGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
 gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
          Length = 452

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 159/417 (38%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FVAIV    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  N  K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQGL---------DIPQIVCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNYLGVPITILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +    A  N   V I +  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRATSNSYAVKIRIFSQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  ++N+++A    +A+G++    L++ + +    GRF     N +   +   
Sbjct: 269 YQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      R+I +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLDEFDGKRVIAITSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
 gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
          Length = 481

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 167/465 (35%), Gaps = 52/465 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ VS D+R +  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 21  DWQVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQALGKGAGAALVS------HIPEGV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P+L+V++    L         +    ++AVTG+ GK+S    ++ +  R G +   
Sbjct: 74  AADAPLLIVEDVLAALEALGRAARARSEARVVAVTGSVGKTSTKEMLRTVLARQGRTHA- 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
                           +  +   +   L+ +       V     +H G         +  
Sbjct: 133 -------------AEASYNNHWGVPLTLARMPRDTQFAVIEIGMNHPGEIAPLARLARPH 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++  +  +     K  +FE L P    A++ AD   +  + + A  AG 
Sbjct: 180 VAMVTTVAAAHLEAFENIEGIAREKAAIFEGLEP-GGIAVVNADLDTTPILEEAATRAGA 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +   G + +  HL  V    ++  +   ++G+   F     G     N L A     A+
Sbjct: 239 SIRRFGTKARDYHLDTVQITGDRTVIRAEIQGETALFKLDCAGRHFAMNGLGALAAVAAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYV--DYAHTSNSLEMIL------- 373
           G D+      L       GR          +R G +    D A  +N   +         
Sbjct: 299 GGDAGRAAPDLALWQPPAGRGTREDVMMDEARQGWVLDLIDDAFNANPTSLEAALEVLAA 358

Query: 374 ----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN--PRSEDPEK 427
                N+  I  GR I + G   +    +  +   IA       + T     PR      
Sbjct: 359 ATPRDNVGRIARGRRIAILGDMLELGPNEIAVHTDIATWPLIAQLDTVHCVGPR------ 412

Query: 428 IRAEIIHGIPGFIE--KGNRIEA-IRTAIEMLNKQDVLVVAG-KG 468
               +   +P        +  E  +    ++++  DV++V G KG
Sbjct: 413 -MRHLWQALPRAQRGTWADMAEEMVAELPDLVDAGDVVLVKGSKG 456


>gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 450

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 162/447 (36%), Gaps = 43/447 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLS--------- 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    F       +   + L+  ++    +    + +  S     ++ L+ I+   G
Sbjct: 128 ---SVYKVFMSPKSYNSQLTLPLSVLMAD-GDEDFLLLEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             T++   H  +   +  Q     K  L E         +I  D ++ +   K+   A  
Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERC----GLQLIPKDSSWFQFFAKKNSAADR 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+  +    + + +    + + V IS    D +     P      N ++A  L    
Sbjct: 240 FSFSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWIT 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            +    + +  + L +   RFE       G R+  D Y  + +++   L  +     G  
Sbjct: 296 NVPMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGK 353

Query: 385 IVVFGCGGDRDQG-----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           I +F  G   + G           + A+  A I     +  +      I  +    I  +
Sbjct: 354 I-IFILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 ++A++  +    + DV+++ G
Sbjct: 411 SAVSEIMDAVKALV---QQGDVVLLKG 434


>gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
 gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
          Length = 453

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 160/417 (38%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FVAIV    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQDL---------DIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNYLGVPMTILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMVTNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +    A  N   V I +  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRATSNSYAVKIRIFDQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  ++N+++A    +A+G++    L++ + +    GRF     + +   I   
Sbjct: 269 YQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      +I+ +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLAEFDGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 456

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 142/384 (36%), Gaps = 43/384 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +    +S DSR I    +F+AI G   DGH F+ + I +G +A+V+      +     + 
Sbjct: 26  QSFKNISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGVKAVVI-----KEGMQNLLP 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG------ 141
              P   V +T +     A     K    ++ +TG+ GK++    + ++ ++ G      
Sbjct: 81  YKFPFWTVPDTLEAFQKLALFKRRKLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLSQ 140

Query: 142 -LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              + +IG   TI               +  K L          + +     G  ++   
Sbjct: 141 LNFNNEIGVGLTIL-----------DSDFKDKTL---------ILEMGMRGLGQIENLSK 180

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +      TN+G  HI    +++    AK  + + L PK    II A+D + +E +KR 
Sbjct: 181 FSEPDIAVITNIGSSHIGILGSKENITYAKCEITKHLNPK-GVVIIPANDLFLEETLKRN 239

Query: 261 HN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            N       +L    + + ++   +   +N+   ++ +E K F+  F        +N L 
Sbjct: 240 WNGRIIKVDLLDKNQKAQSLNKTNLQGFYNRSNNSVIIEDKIFEISFQGF--HNAFNFLF 297

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNI 376
              +   +GI          K + V          S+   IY   Y  +  S++  + N+
Sbjct: 298 VYAVAKELGIKFKDTN----KFNFVSLNGRNKILKSKKTTIYDETYNASPESVKACINNL 353

Query: 377 RTITSGRIIVVFGCGGDRDQGKRP 400
               +   ++        ++ ++ 
Sbjct: 354 LDNPNNHFLIFGSMQELGNKSQKY 377


>gi|255012790|ref|ZP_05284916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. 2_1_7]
 gi|262382745|ref|ZP_06075882.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298374305|ref|ZP_06984263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
 gi|262295623|gb|EEY83554.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298268673|gb|EFI10328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
          Length = 427

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 143/392 (36%), Gaps = 31/392 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +     D+    R+   
Sbjct: 15  QITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNP----DYYIGERT--- 67

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  K L   A          I+ +TGT+GK++    +  +         +     
Sbjct: 68  -ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLST------KFNLLY 120

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F     +           L       +  + + AS  G  +  +D +    G  TN
Sbjct: 121 TEGNFNNHIGVP-------LTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITN 173

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H++   + +     K  L++ +   +    I  ++ Y + + K     G   ++ G
Sbjct: 174 VGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----GIEQITYG 228

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    +V +           +GK       + G + + N L A  +     I +  
Sbjct: 229 NGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAER 288

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   +        R +F  T++    I   Y    +S+++ L N  T+      ++ G  
Sbjct: 289 ISRAIAAYEPTNNRSQFKKTDNN-ELIIDAYNANPSSMKVALDNFITMPVQPKAIILGDM 347

Query: 392 GDRDQGKRPIMGKIALD----LADIAIVTDDN 419
            +       +  ++         D   +  ++
Sbjct: 348 RELGPTSDELHAEVVEQIKKGQFDKVFLCGEH 379


>gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Clostridium cf. saccharolyticum K10]
          Length = 476

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 148/451 (32%), Gaps = 34/451 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  +S DSR      +FV ++G K+DGH FI  A+ QGA A+  S      +     
Sbjct: 23  DAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAA 82

Query: 87  R---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                    + VD+TR+ L    + +  +    ++ +TG+ GK++    V          
Sbjct: 83  AKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSA---- 138

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGI 202
                                 S + +   LS +S    +  + +  S  G         
Sbjct: 139 ----------GFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIA 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +     TN+G  HI+   T++     K+++ +  +  + P  +  D+      + RA  
Sbjct: 189 AVDMAVITNVGVTHIENLGTRENILREKLKIQDG-MRADGPVFLNGDNDLLG--ISRARE 245

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V     +        +         T+    +       + GE  V NAL A  + 
Sbjct: 246 GHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAALAVA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
              G+      E L +      R +      +G  +  D Y  + +S++  L+ + +   
Sbjct: 306 DYNGVPLEAAAEKLREFTGFKNRQQI--REKQGITVIDDTYNASPDSMKAALRVLSSFGQ 363

Query: 382 GRIIVVFGCGGDR----DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            R  V            ++     +G+         +VT      E   +I        P
Sbjct: 364 ARRRVAVLADMKELGPDERRFHREVGEFLAGEKVELLVT----FGELAGEIGEGARERRP 419

Query: 438 GFIEKG--NRIEAIRTAIEMLNKQDVLVVAG 466
                   +R +        L+  D ++  G
Sbjct: 420 SLQTAAFTDREKMTEFLKRELSAGDCVLFKG 450


>gi|260891634|ref|ZP_05902897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
 gi|260858644|gb|EEX73144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
          Length = 464

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 80/489 (16%), Positives = 171/489 (34%), Gaps = 72/489 (14%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  + +IN +S +S+ +    IFVAI G    G+ F+ +A+ +GA A+     Y  +  
Sbjct: 14  VEISDLEINNISINSKELGKNDIFVAIRG----GNNFVNEALEKGAFAV-----YDSKTL 64

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC----- 137
               +       V+++ +FL  FA          ++ +TG++GK++V   +  +      
Sbjct: 65  KIDEKYANRAFFVNDSIEFLQNFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYK 124

Query: 138 --QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             +  G  +  IG   T+    +D++                         +  S  G  
Sbjct: 125 GKKTEGNYNNHIGLPFTLLRAEEDDKFIILE--------------------MGMSGFGEI 164

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                         TN+G  H+++ +T++  F AK  +   +       +I  DD Y K 
Sbjct: 165 DLLGQIALPDINVITNIGESHLEFLKTKENVFLAKTEIIPYIKN---TLVINGDDDYLKN 221

Query: 256 V----MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFP 305
           V    ++              +    +   V    +     +   GK      + ++   
Sbjct: 222 VKAENIEVVKALNLGSNEFREKTSDFYYGDVHFNESGTDFFLKYFGKICQSTVERNYKTN 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V N ++A  +    G++  ++ E ++ + +   RF+ +  N     I   Y  +
Sbjct: 282 VLGEHNVLNLVMAIAVAKQFGMEDKIISEAVKNIGLTGMRFQII-ENGDTTYINDAYNAS 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-----IMGKIALDLADIAIVTDDNP 420
             S+E  L+    I + R+ ++                  +   I     D   +     
Sbjct: 341 PMSMEKSLETFSQIYNDRLKIMVLGDMLELGENELELHSNLFNTIKNTKFDKLYL----- 395

Query: 421 RSEDPEKIRAEIIHGIPGFIEKG-----------NRIEAIRTAIEM-LNKQDVLVVAGKG 468
             E  + +  +I   +     +            ++ E I+  I     ++ VL+ A +G
Sbjct: 396 FGERMKSLFEKIKENVDNENLENENLKNKEFGHFDQKEEIKEKIRQISGEKAVLLKASRG 455

Query: 469 HETVHIVTN 477
                I+  
Sbjct: 456 MRLEEIIEK 464


>gi|220912335|ref|YP_002487644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859213|gb|ACL39555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 488

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 139/451 (30%), Gaps = 39/451 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V +DSR    G ++VA  G   DGH FI  A   GA   +V    +  D S+      
Sbjct: 26  TSVVTDSREATPGSLYVAKPGEHADGHDFIAAAFESGAVLALVERPAARPDGSSY----- 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVASFVQQICQRSG 141
           P ++V++    +   A+    +             ++ +TG++GK++    +  +    G
Sbjct: 81  PSVLVEDAVLAMGALAAEAVRRIRAARAAAVQELTVVGITGSAGKTTTKDLLAGLFASQG 140

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +    G  +                 YL              + + A+  G  ++  D 
Sbjct: 141 STVAPKGSYNGEVGVPLTVFQADEGTRYL-------------VIEMGATGIGHIRYLADM 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K   G    +G  H            AK  + E L   +  AII  DD     +  R  
Sbjct: 188 VKPDIGVVLAVGTAHAGEFGGVDNIALAKGEMVEGL-SADGTAIINLDDDRVAAMRSRTT 246

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF--DFLFPLPGEFQVYNALVA 318
                  + G  G  +         +   +  + + G D        L G     N L A
Sbjct: 247 ATVLGFSAEGRGGAAVQALSADTNEHGNPEFDLQLPGSDGPQHVASKLIGAHHTGNLLAA 306

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
           A    A G+  A +   L K              + G  +  D Y     S+   L+ + 
Sbjct: 307 AAAAFAAGMSGADIAAGLSKQSAASRWRMERTERADGVTVINDAYNANPESMRAALRTLA 366

Query: 378 TITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            +  GR    V G   +           +   +  + I        E      + +  G 
Sbjct: 367 DLGRGRRTWAVLGAMLELGDDSIREHTAVGTQVVRLNISRLVVVGREARALYVSAVQEGS 426

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLV 463
            G    F E  +  EA       L   D+++
Sbjct: 427 WGDECLFAENPD--EAYELLNAELEPGDLVL 455


>gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
 gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
          Length = 477

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 161/472 (34%), Gaps = 74/472 (15%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R I  G +FVA+   + DGH F+ QA+ QGA A +V+         A + ++ 
Sbjct: 25  QGVSIDTRTIAQGDLFVALKDVR-DGHEFVAQALDQGAAAALVT------HRPADVPADA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +    L         +    I A+TG+ GK+S    ++ + ++ G         
Sbjct: 78  PLLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKTSTKEMLRAVLEKQGKCHA----- 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ + +      + +  S+ G         +      
Sbjct: 133 ---------AEASYNNHWGVPLTLARMPADADYAVIEIGMSNPGEITPLSQMTQPHVAML 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+            K  + + L P    A++  D   S  +   A   G R + 
Sbjct: 184 TTVAAAHLASFDNLAGIAVEKASIMDGLEP-GGVAVLNGDIETSGILQDHAAKLGARQVL 242

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G       +K V    +   ++ S  G+++ F   +PG     NA+    +  A+G D 
Sbjct: 243 FGETAPDWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHFAMNAVGVLAVAEALGADP 302

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRT--------- 378
                    +        +V    RG R  I  D A+   SLE++               
Sbjct: 303 ---------VAAALDIGAWVPPAGRGTREVIVTDMANDGESLELLDDAFNANPTSLVAAL 353

Query: 379 --------------ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNP 420
                         I  GR + + G   +    ++ +  ++A +      D+        
Sbjct: 354 EVLAAATPTDNVGRIVKGRRVAILGDMLELGDAEQEMHREMAGNSHLQSLDLVHC----- 408

Query: 421 RSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
                  +   +   +P            E +  A  +++  DV++V G KG
Sbjct: 409 ----AGPLMLHLWQALPEEQRGHWAETAAELVLQAPRLVDAGDVVLVKGSKG 456


>gi|56476231|ref|YP_157820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum
           aromaticum EbN1]
 gi|56312274|emb|CAI06919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Aromatoleum aromaticum EbN1]
          Length = 466

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 157/444 (35%), Gaps = 28/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + V +DSR I+AG +FVA+ G + DGH F+ QA A   +    +   +    +  + S 
Sbjct: 20  FSSVGTDSRKIKAGQLFVALRGERFDGHEFVVQAAA---DGAAAALVDARWAGTQPVPSP 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVV++TR  L   A+    +    ++ VTG++GK++V      + +           
Sbjct: 77  LPLLVVEDTRLALGRLAAHWRARFELPVIGVTGSNGKTTVKEMCTAVLRAQARRDGHGAE 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++   +N +  P        L   SS     V +  +  G   +     +      
Sbjct: 137 AVLATAGNLNNDIGLPLT-----LLELRSSHRAAIVEMGMNRPGEIAYLAGLARPTVAVV 191

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN  R H+    T       K  ++E L P +  A+I ADD  +     R  NA  R L 
Sbjct: 192 TNAQRAHLQGMGTVIGIAREKGAIYEALGP-DGVAVINADDTQAGYW--RELNAARRTLV 248

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                +     +         + ++           +PGE    NA  AA  C+A G   
Sbjct: 249 FSLTPRADVAGECTLRGLGSHLVMTTPAGRIAVDLQVPGEHNARNATGAAAACLAAGASP 308

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVF 388
             V E L       GR +       G  +  D Y    +SL   +  +   T G+ I+V 
Sbjct: 309 EAVAEGLAAYTGTRGRLQR-RAGPNGAVVLDDSYNANPDSLRAGIDVLAA-TPGQKILVL 366

Query: 389 ----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
                 G    Q    I G       D           E      +    G   F     
Sbjct: 367 GDMGEIGWTSAQVHDEIGGYAKSKGVDALF-----ALGEMSAVAASNFGGGGHHFAS--- 418

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
            +EA+  A+      D +V+  KG
Sbjct: 419 -VEALVAALTRKLDGDTVVLV-KG 440


>gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
 gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
          Length = 452

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 140/368 (38%), Gaps = 27/368 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + E   + V +D+R +  G +FVA+ G+  DG+ F+            V +       S 
Sbjct: 19  FGEASFSNVCTDTRSVSPGDLFVALAGDHYDGNQFVSD---------AVIAGAVAAITSE 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + +  P + VD+TR  L   A     +    ++A+TG++GK++    V +I    G   
Sbjct: 70  AVTAAIPSVKVDDTRFALGQIARLNRRRFSGPVVALTGSAGKTTTKEMVARILCERGE-- 127

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                 +T ++F  +  +           L+   S     V + AS  G   +     + 
Sbjct: 128 ----VLATEANFNNEIGVPL-------TLLAIDPSHQFAVVEMGASHIGDIAYLTQFAEP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN    HI+   + +A    K  +FE L P+   AII  D+ + ++ +++A  A 
Sbjct: 177 TIAVLTNAMAVHIEGFGSIEAVAKTKGEIFENL-PEGGVAIINQDEPFFQQWLQQAGKAS 235

Query: 265 CRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S       +         +      + +  +       L GE  V NA+ AA   +
Sbjct: 236 VVTFSKYDTSANYYASNIHIQTNASTVFELHLAQQTITIKLALLGEHNVLNAVAAAAAAM 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
             G     V + LE +  V GR +    ++R   +  D Y  +  S+   +  +   +  
Sbjct: 296 TAGATVDDVKKGLESVRPVDGRLKASADSNR--TVIDDTYNASPGSVMAAIDVLSGFSGR 353

Query: 383 RIIVVFGC 390
           R +++   
Sbjct: 354 RCLILGTM 361


>gi|298293104|ref|YP_003695043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
 gi|296929615|gb|ADH90424.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
          Length = 479

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 95/462 (20%), Positives = 160/462 (34%), Gaps = 33/462 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   +    +    R I  VS D+R +Q G +F AI G+  DGH ++  A  +GA   VV
Sbjct: 13  LAAAVGGTLIGAPARAIGGVSIDTRTLQPGDVFFAIRGDNSDGHAYVGMAADRGAALSVV 72

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                  D   T+     +L VD+    L        G+    I+ VTG+ GK++    +
Sbjct: 73  ER-----DRVGTLPEGAALLAVDDVLGALQAAGRAARGRTRARIVGVTGSVGKTTTKEAL 127

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH- 192
                  G +                +  +  +   +  +L+ + +     V     +H 
Sbjct: 128 LLALGADGPTHA--------------SAASYNNHWGVPLSLARMPASSAYGVFELGMNHA 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +  +  ++      T +   HI      +A  +AK  +F  + P    A++  D+ +
Sbjct: 174 GEIEPLVKMVRPHVAVITTIEPVHIAQFPNVEAIADAKAEIFTGVEP-GGAAVLNRDNPH 232

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEF 310
            + +   A  AG + +    +      + VC     Q  T + +  G+   F   LPG  
Sbjct: 233 FERLAAAARAAGIQNIVGFGEAADAQARLVCVKLQAQSSTANADIMGETVSFKIGLPGRH 292

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTSN 367
            V NAL        +G D  L    L  L   PGR     +G       +  + Y     
Sbjct: 293 IVQNALAVLAAARLVGADLCLAAMALSSLGPPPGRGVRTTLGVKGGFATLIDESYNANPA 352

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   L  + T      GR + V G   +       +   IA   A   +V    P    
Sbjct: 353 SMRAALAVLGTAPVEGRGRRLAVLGDMLELGPRGEAMHADIAPAAASADLVFCAGPLMRA 412

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +   E   G        +    +    E L   DV++V G
Sbjct: 413 LWEALPENRRGA----WAPDARALLPLVAERLRGGDVVMVKG 450


>gi|15606557|ref|NP_213937.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
 gi|6919927|sp|O67373|MURC_AQUAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2983764|gb|AAC07323.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
          Length = 454

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 85/423 (20%), Positives = 165/423 (39%), Gaps = 53/423 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTR--------KFLSLFASRLYG 111
            +GA+  +     +L D     +S+ ++ + P +     R        + L+       G
Sbjct: 49  QKGAKIYIGHRPENLGDAQVVVYSSAVKPDNPEIQEAKRRNIPVIPRGEMLAELFKLKEG 108

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIY 169
                 +AV+G+ GK++  S + +I   +GL    I  G    + + A+  R        
Sbjct: 109 ------IAVSGSHGKTTTTSMIAEILINAGLEPTVIIGGRLKRLGTNAKLGR-------- 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                      G   VS    S G        ++      TN+ ++H+D+++  +    A
Sbjct: 155 -----------GELLVSEADESDGSFLK----LQPAVAVITNVDKEHLDFYENFERVKEA 199

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNK 288
               F   +P    A++  DD    +++K++H    RV++ G      +  K +     +
Sbjct: 200 -FEQFMNSVPFYGFAVVNLDDPTLAQLVKKSHE---RVITYGINSPALVRAKNLYLKEGR 255

Query: 289 QQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  +  +GK+       + G   VYNAL A G+ + +G+   ++ + LE+      R E
Sbjct: 256 YEFGVEFKGKELGRIHLGIAGIHNVYNALAATGVALELGVSFEVIKKSLEEFRNAERRLE 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             G       +Y DY H    ++ ++ ++R +     ++VVF                  
Sbjct: 316 LKGYYKNSP-VYDDYGHHPTEIKAVINSLRDMYPDKNLLVVFQPHRYSRTYYLFEDFVKV 374

Query: 407 LDLADIAIVTDDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           L   D  IVTD  P SE+    + AE +    G +   ++ E      E+ ++ DV++  
Sbjct: 375 LKDIDKLIVTDIYPASENNVYGVSAEELARKSGAVFAKDKEEVFEKVREVHDEGDVILFL 434

Query: 466 GKG 468
           G G
Sbjct: 435 GAG 437


>gi|116626350|ref|YP_828506.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|123319314|sp|Q01Q49|MURC_SOLUE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116229512|gb|ABJ88221.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 472

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 90/438 (20%), Positives = 147/438 (33%), Gaps = 56/438 (12%)

Query: 51  GNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G +  +GH      IA GA A+VVSSA   Q+          I V+    + L+      
Sbjct: 61  GARVFEGH--AASNIA-GARALVVSSAVDEQNPEVQEARRISIPVIPRG-ELLAELMRLK 116

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSP 167
           YG      +AV G+ GK++  S    I   +GL    +  G   T+              
Sbjct: 117 YG------IAVAGSHGKTTTTSMAATILNYAGLDPTVVVGGRVGTMGG------------ 158

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                     S+  V H                 +  I    TN+ R+H+D++    A  
Sbjct: 159 ----------SNARVGHSDFLVVESDESDGSFLKLAPIIAVVTNVDREHLDHYPDLDAIR 208

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIH 286
            A +  F   +P     I+  DDA  + ++        R ++ G      +    +    
Sbjct: 209 AAFLE-FVNKVPFYGAVIVCLDDANVQGLLPEIRR---RTITYGTTAQADMEAGDISCGP 264

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              +  +     D   F   +PG   V NA+ A  + + + +    + E LE    V  R
Sbjct: 265 FASEFRLRYRTADLGRFRLHIPGRHNVLNAMAAIAVAMELEVKPDTIREALETFSGVDRR 324

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           F+  G   RG  +  DY H    +   L   R     RI V+F                 
Sbjct: 325 FQLRGQE-RGIAVVDDYGHHPTEIRATLDGARQCGFRRIHVLFQPHRYTRTFHLMDEFAR 383

Query: 406 ALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
           +   AD   V D    SE P          E+IR     G+  ++   +R   +   +  
Sbjct: 384 SFHQADSLFVMDIYAASEKPIPGVTAESLVERIRQFGHRGV-EYVGTLDRG--VDALVAA 440

Query: 456 LNKQDVLVVAGKGHETVH 473
            ++ D+++  G G     
Sbjct: 441 ASEGDLVLTLGAGS-VYQ 457


>gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 465

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 140/399 (35%), Gaps = 49/399 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR  + G +FV + G + DGH F  +A+ QGA A++ S               
Sbjct: 2   VTCVVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASRPLP--------DVA 53

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-------L 142
            P+L+V++T + L   A+   GK    ++ VTGT+GK+S+   + Q+    G        
Sbjct: 54  APVLLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRGKTARNALN 113

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            + QIG   T+ +   D                              S  G        I
Sbjct: 114 HNNQIGMPCTVLNTDGDEDFWVIEA--------------------GISHAGDMDELAPVI 153

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G   N+G  H +    +      K RL   L  +    ++ AD          A  
Sbjct: 154 RPDLGLILNVGPGHTEGLGDR-GVAWHKARLLAHL-AQGGLGLVSADYPDLVREAG-ATG 210

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQ-------VTISVEGKDFDFLFPLPGEFQVYNA 315
           A  R  S G          V                 + ++G   D + P  G +   N+
Sbjct: 211 AKLRFFSAGAHEVEYRADYVGPATEAGGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENS 270

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           +  A     +G+  A + E L +  + P RF      +    I  D Y     S+  +L+
Sbjct: 271 IAVAAAAHLLGLSPAEIAEGLGRAQLPPQRFNRERVGAW--EIIDDTYNANPLSMRRMLE 328

Query: 375 NIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADI 412
                  GR  V V G  G+       +  ++   LAD+
Sbjct: 329 TAAGQARGRAFVPVLGEMGELGAVAEALHEELGRLLADL 367


>gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 488

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 161/456 (35%), Gaps = 49/456 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V  DSR + AG +F+A+ G + DGH  +  A+  GA A +VS         A I ++ 
Sbjct: 37  TGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSR------IPAGIATDR 90

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +LVV++T + L   A     +    ++ VTG+ GK+     + Q   R G      G  
Sbjct: 91  -LLVVEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNL 149

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
           +                  L   L+ + +     V     +H  +   L  + +      
Sbjct: 150 NN--------------HFGLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAII 195

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268
           TN+   H+++  + +A  +AK  + E + P     ++  D+ + + + + A   G  + L
Sbjct: 196 TNVAAVHLEFFDSVEAIADAKAEILEGVEP-GGTVVLNRDNRFFERLRRAAAARGIDKTL 254

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S G   G    +       N   V   +      +   + G     N+L    +  A+G+
Sbjct: 255 SFGNHIGADARVLDCAVDANGTAVFALIGDDPLAYRMAVEGRHWALNSLGVLAVVRALGL 314

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVD-YAHTSNSLEMILKN---IRTIT 380
           D       L  +    GR      +  G    ++  D Y  +  S+   L      R   
Sbjct: 315 DIHSAANGLANVVPPRGRGRRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGP 374

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +       +   +A    +         R  D       ++  +   +
Sbjct: 375 RGRRIAVLGDMLELGPQAAKLHADLAKISVE---------RGIDLVYTAGPLMAHLHDAL 425

Query: 441 EKGNR------IEAIR-TAIEMLNKQDVLVVAG-KG 468
               R       +A+    +  L   DV++V G KG
Sbjct: 426 PASRRGGHAPDADALTPLVLAALRPGDVVMVKGSKG 461


>gi|148988717|ref|ZP_01820150.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
 gi|147925918|gb|EDK76993.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
          Length = 356

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 145/384 (37%), Gaps = 41/384 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A   GA A +     +          N P ++VD+        A+    K   ++ AV
Sbjct: 56  ERAFENGAAATLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G                 + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLSTTYKTYKTQG--------------NYNNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  + +      T +G  H+ + + +      KM++      
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQI------ 205

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A      A +  +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 206 ADGMASNSLLLAPADSIVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTITSG 382
            D Y     ++++IL+    I + 
Sbjct: 322 SDVYNANPTAMKLILETFSAIPAN 345


>gi|295135754|ref|YP_003586430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
 gi|294983769|gb|ADF54234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
          Length = 430

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 121/339 (35%), Gaps = 27/339 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+D+R+I+   +F A+ G   +G+ F  +A+ +GAE  +V      +D         
Sbjct: 14  SGVSTDTRNIKPNSLFFALKGENFNGNEFAEEALNKGAEVAIVDEEAYAKDQDN------ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + V++    L   A+         +LA+TG++GK++    +  +  +       I  T
Sbjct: 68  -YIFVEDCLDALQQLATFHRHFLGIPVLAITGSNGKTTTKELINAVLTK---KYKTISTT 123

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +++                  L    +  V  V + A+  G  +   +      G  T
Sbjct: 124 GNLNNHIGVPLT----------LLRMDETTEVGVVEMGANHQGEIEFLTEIALPDYGYIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L+  L   +    +  DD      +++  ++   V + 
Sbjct: 174 NFGKAHLEGFGGIEGVIKGKSELYTHLKNHKKLLFLNLDDE-----IQQRQDSYSHVFTF 228

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G   K           N  +        D  F   L G++  YNA  A  + +   +   
Sbjct: 229 GSSEKAAVSIDYTISQNGPEYASFTYNNDV-FNTQLTGQYNAYNAAAALTIGLYFKVPFK 287

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            + E +++      R +   T +    +   Y     S+
Sbjct: 288 AIKEAIKEYSPSNNRSQIQKTKNN-TLLLDAYNANPTSM 325


>gi|150009948|ref|YP_001304691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|149938372|gb|ABR45069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
          Length = 427

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 143/392 (36%), Gaps = 31/392 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +     D+    R+   
Sbjct: 15  QITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNP----DYYIGERT--- 67

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  K L   A          I+ +TGT+GK++    +  +         +     
Sbjct: 68  -ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLST------KFNLLY 120

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T  +F     +           L       +  + + AS  G  +  +D +    G  TN
Sbjct: 121 TEGNFNNHIGVP-------LTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITN 173

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H++   + +     K  L++ +   +    I  ++ Y + + K     G   ++ G
Sbjct: 174 VGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----GIEQITYG 228

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    +V +           +GK       + G + + N L A  +     I +  
Sbjct: 229 NGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHIIGSYNLDNVLAAVAVGRFFKIPAER 288

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   +        R +F  T++    I   Y    +S+++ L N  T+      ++ G  
Sbjct: 289 ISRAIAAYEPTNNRSQFKKTDNN-ELIIDAYNANPSSMKVALDNFITMPVQPKAIILGDM 347

Query: 392 GDRDQGKRPIMGKIALD----LADIAIVTDDN 419
            +       +  ++         D   +  ++
Sbjct: 348 RELGPTSDELHAEVVAQIKKGQFDKVFLCGEH 379


>gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
 gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
          Length = 450

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 151/402 (37%), Gaps = 25/402 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L   P    +  IN++++DSR  Q G +F A+VG   D H F+P  +A+GA A+V  
Sbjct: 9   VRRLFRLPEIATDSPINQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVVSR 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +              L VD+T   L   A+    +    +  +TG+SGK++V   + 
Sbjct: 69  GDCASFSG---------CLKVDDTLAALQTLAAAWRKQLNPFVYGITGSSGKTTVKEMLA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I + +  +   +      ++            I L   L  L       V     +H  
Sbjct: 120 SILRTAHGADAVLATAGNFNNH-----------IGLPLTLLNLREPHRHAVIEMGMNHAG 168

Query: 195 DQHRLDGI-KLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           +   L  I         N  R HI            AK  +++ L P+   AI+ A+D +
Sbjct: 169 ELATLTRIAAPNVALVNNAMRAHIGCGFNGVDDIARAKAEIYQGL-PENGIAILPAEDDH 227

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               + +A  +  + L+ G     +H + +          +   G       P+ G+  +
Sbjct: 228 LA--IFQATVSAFKTLTFGATVGDVHAENIALEALSSTFDLVYNGNRQAVQLPVAGKHNI 285

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA  AA L IA G+    +   L     + GR +      +   +   Y    +S++  
Sbjct: 286 SNACAAAALAIAGGLRQPEIARGLAAFSNIKGRLQRKNGIRQTLILDDTYNANPDSMKAA 345

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           L  +  + + R+ V+   G   +     +  +I +   D+ I
Sbjct: 346 LDVLAKLPAPRVFVMGDMGELGEDEAPKMHEEIGIYARDLGI 387


>gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
 gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
          Length = 480

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 148/451 (32%), Gaps = 34/451 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  +S DSR      +FV ++G K+DGH FI  A+ QGA A+  S      +     
Sbjct: 27  DAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAA 86

Query: 87  R---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                    + VD+TR+ L    + +  +    ++ +TG+ GK++    V          
Sbjct: 87  AKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSA---- 142

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGI 202
                                 S + +   LS +S    +  + +  S  G         
Sbjct: 143 ----------GFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIA 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +     TN+G  HI+   T++     K+++ +  +  + P  +  D+      + RA  
Sbjct: 193 AVDMAVITNVGVTHIENLGTRENILREKLKIQDG-MRADGPVFLNGDNDLLG--ISRARE 249

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V     +        +         T+    +       + GE  V NAL A  + 
Sbjct: 250 GHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAALAVA 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
              G+      E L +      R +      +G  +  D Y  + +S++  L+ + +   
Sbjct: 310 DYNGVPLEAAAEKLREFTGFKNRQQI--REKQGITVIDDTYNASPDSMKAALRVLSSFGQ 367

Query: 382 GRIIVVFGCGGDR----DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            R  V            ++     +G+         +VT      E   +I        P
Sbjct: 368 ARRRVAVLADMKELGPDERRFHREVGEFLAGEKVELLVT----FGELAGEIGEGARERRP 423

Query: 438 GFIEKG--NRIEAIRTAIEMLNKQDVLVVAG 466
                   +R +        L+  D ++  G
Sbjct: 424 SLQTAAFTDREKMTEFLKRELSAGDCVLFKG 454


>gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37]
          Length = 447

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/435 (21%), Positives = 148/435 (34%), Gaps = 39/435 (8%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            D R  + G +FVA  G   DGH +  QA   GA A++ S   +L           P +V
Sbjct: 31  LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGRAGAVAVLGSRPTTL-----------PTVV 79

Query: 95  VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V++ R  L   A+ +  +  + +  + +TG+ GK+S    +  +   +G +   IG  + 
Sbjct: 80  VEDARAALQALAAHVVARLRDRLTVVGLTGSQGKTSTKDLLAAVLSHTGSTVATIGSLNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                     TTP   +L              + + A   G        + L      N+
Sbjct: 140 ELGVPLTMLRTTPDTRFL-------------VLEMGARGIGHIAELTALVALDVAVVLNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ HI    +++A   AK  L + L+P    AI+ ADD     VM+   +          
Sbjct: 187 GQAHIGEFGSREAIATAKAELLQGLVP-GGTAILNADDPRV-LVMRALTDGPALTFGRAE 244

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 L        +   T+           PL G  Q  NA  AA   +A GI   + 
Sbjct: 245 HAHVRVLDLALDRLGRPAFTLRTADASAPVALPLVGAHQALNASAAAAAGLAAGIPLDVT 304

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              L    +   R E  G +     +   Y    +S    L  +  I +GR I V G   
Sbjct: 305 AATLATASLSKWRMELRGLSGGVSLLNDSYNANPDSTRAALDALAAIEAGRRIAVLGEMR 364

Query: 393 DRDQGKRPIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
           +            G+ A   AD+ +        E    I           +   +   A+
Sbjct: 365 ELGDDSEAEHRAIGEYAARAADLVV-----AVGEAAAPIAE---GAGDRAVALADNDAAV 416

Query: 450 RTAIEMLNKQDVLVV 464
                 L   DV++V
Sbjct: 417 DWLRRALTAGDVVLV 431


>gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 450

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 161/453 (35%), Gaps = 55/453 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLS--------- 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    F       +   + L+  ++    +    + +  S     ++ L+ I+   G
Sbjct: 128 ---SVYKVFMSPKSYNSQLTLPLSVLMAD-GDEDFLLLEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             T++   H  +   +  Q     K  L E         +I  D ++ +   K+   A  
Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERC----GLQLIPKDSSWFQFFAKKNSAAER 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+  +    + + +    + + V IS    D +     P      N ++A  L    
Sbjct: 240 FSFSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWIT 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            +    + +  + L +   RFE       G R+  D Y  + +++   L  +     G  
Sbjct: 296 NVPMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGK 353

Query: 385 IVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTD------DNPRSEDPEKIRAEII 433
           I+         G   D+    +  K       I  V +      D  R  D +      I
Sbjct: 354 IIFILGHMAELGRYSDECHIAVARKAVTKAHIIFFVGEKWFPVRDIVRDADCQ------I 407

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  E  + ++A      ++ + DV+++ G
Sbjct: 408 GFYSAVSEIMDTVKA------LVQQGDVVLLKG 434


>gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
          Length = 885

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 152/407 (37%), Gaps = 30/407 (7%)

Query: 98  TRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            R         L+  G+    I+A+TGT+GK++V   +  I + +G   + +G T+T   
Sbjct: 460 PRDVAGAIVDYLFPDGQGRIPIIAITGTNGKTTVTRMIGHIWRTAG---YCVGMTTTDGI 516

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           +   + +        A A + L+   V    +E +  G+ +  L   +   G  TN+  D
Sbjct: 517 YIDGHCIQKGDTTGPASARAVLTDPTVEVAVLETARGGIVRGGLAFDQCDVGIITNITED 576

Query: 216 HIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----- 269
           H+     +     A ++ L  E +     A++ ADD Y   +  R         +     
Sbjct: 577 HLGQDGIEDLDDLAYIKSLVVETVRPGGYALLNADDPYVVRLAGRVRGEVVYFSTEADNI 636

Query: 270 -----VGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                +G  GK   +K  +         +      D            + NALVAA  C 
Sbjct: 637 VVRRHLGIGGKAFFVKDSILYAACGSLASPICAVGDIPVTLGGIAVHNLQNALVAAAACY 696

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            + +    + + L      PGR   +       R+ +DY H     + ++  +R + + R
Sbjct: 697 CLKVPMTHIRQGLATFDQNPGRLNLLTLGD--IRVCIDYGHNPAGYQALINTVRRLGATR 754

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEK 442
           ++ V    GDR       +G+IA    D   + +D + R   P ++   +  G+      
Sbjct: 755 LVGVIAAPGDRRDDVIVNVGRIAGRGFDYIYIKEDADRRGRAPGEVAQLLRRGVLEAQFP 814

Query: 443 GNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            +RI       EA+  A+      D++VV    +E    V  G ++ 
Sbjct: 815 EDRIVTILAETEAVAKALADARPGDLVVVF---YEKYEKVLAGIQEF 858


>gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 465

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/444 (20%), Positives = 165/444 (37%), Gaps = 29/444 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
              S DSR +    +F A+ G++ DGH F+  AI +GA   VVS A + +     +  + 
Sbjct: 26  TGYSIDSRTLATDDLFFAVKGDRFDGHDFVAAAIHRGAVGAVVSRARAAELLP--LIDHA 83

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +L+VD+    L   A+ +     + ++ VTG++GK++    +  +           G  
Sbjct: 84  SLLLVDDPLAALQQLAAAVRRHWGKRVVGVTGSAGKTTTKEAIAAVL----------GAG 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +       P+ L   L   +   +  + +  +  G             G  T
Sbjct: 134 YRVLKSQGNLNNNFGLPLQL---LRLDTEDEIAVIEMGMNHAGEITALARIAMPDWGVVT 190

Query: 211 NLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++           AK  L  + LP E  A +  DDAY   V +   +   RV+ 
Sbjct: 191 NVGKAHVENFTDGIAGVARAKYELV-QALPAEGIAFLNCDDAY---VSQFGRDFHGRVIL 246

Query: 270 VGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G +G   HL+     +      ++T+S EG+       L GE  V NAL A  + +A  
Sbjct: 247 FG-RGPCAHLRVEQLENLGAEGTRLTVSAEGRCATLHLHLLGEHNVSNALAALAVGLAAE 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           I   +    LE L     R + +    RG  I  D Y     +L+ ++  +  +   R I
Sbjct: 306 IPLEIGARALESLRADEKRGQIIP--WRGASIVNDCYNSNPEALKAMIATLMGMPGNRHI 363

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +V G   +       +        A   +      R     +I           +     
Sbjct: 364 LVAGEMLELGAEAPALHAACGEAAAAAKVDIVVGVRG-AASQIVDAARRAGADAVYVETP 422

Query: 446 IEAIRTAIEMLNKQDVLVV-AGKG 468
            +A       L + D +++ A +G
Sbjct: 423 EDAGIWLKANLREGDAVLLKASRG 446


>gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 475

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 147/387 (37%), Gaps = 28/387 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++AG +F A+ G + DGH F+ QA+A GA   V++   + +         T ++ V
Sbjct: 31  DSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARGAVIARPLA-EVLPGGPPPGTAVVEV 89

Query: 96  DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            +TR+ L+  A  +  + P   ++ +TG+ GK++       + ++      +     T  
Sbjct: 90  ADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTKEMTAAVLEQ------RFAVLKTAG 143

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLG 213
           ++  D        I L   L  L       V   A     +  RL  I     G  T + 
Sbjct: 144 NYNTD--------IGLPLILLDLEDHHQVAVLEMAMRGLGEIARLASIAEPDIGVVTVVA 195

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             H+++  + +    AK  L E L P +  AI+ A D         A     RVL+ G +
Sbjct: 196 ESHLEFLGSLEKIAQAKGELVEAL-PADGVAILNAGDPRV---RAMAARTRARVLTFGVE 251

Query: 274 -GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            G  +    V +     +  + + G D       LPG   V  AL AA + + +G+D+  
Sbjct: 252 GGADVRAVAVESRGPGTRFRLEIPGGDAATVELALPGPAAVTCALAAAAVGVVLGLDADA 311

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L +      R E     S        Y  +  S    L+ +R +   R  V     
Sbjct: 312 IAAGLGRARPASLRSEIRQAGSW-TLFIDCYNASPTSTAAALQALRQVAGDRRAVAILGD 370

Query: 392 G----DRDQGKRPIMGKIALDLADIAI 414
                D  +      G+ A    D+ +
Sbjct: 371 MFELGDWAEEGHRRTGQAAARSVDVLL 397


>gi|308177863|ref|YP_003917269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
 gi|307745326|emb|CBT76298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
          Length = 485

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 160/484 (33%), Gaps = 48/484 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + +L   D  E+    +   +   +  I  V++DSR +  G ++VA  G   DGH FI  
Sbjct: 1   MIELSLTDLLEITGGKATATVAA-DTVITSVATDSREVLPGALYVAKPGEFSDGHTFIDG 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS----RLYGKHPENIL 118
           A A GA   +       ++     R   P ++V++    +   A+     L  K+   ++
Sbjct: 60  ARAAGAVLSLAERITHDEE-----RREHPAIIVEDAVDAMGKIAAHIVSHLKAKNDAKVV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK++    +  I  ++  +   IG                          S   
Sbjct: 115 GITGSAGKTTTKDLLAGILSQAAPTVSPIG-------------SYNGEVGVPLTVFSATE 161

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + + A+  G   +  D +    G    +G  H       +    AK  L E L 
Sbjct: 162 ETKYFVIEMGATGIGHLNYLTDMVHPHVGVVLCVGTAHAGEFGGVENIEKAKGELVEAL- 220

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTIS 294
             E  AI+ A+D     +  RA +   R    G              V     + ++T+ 
Sbjct: 221 DTEGIAILNAEDPRVARMESRARS-QVRFFGTGAVKPENAGVWASDVVVNAEGQPELTLE 279

Query: 295 VE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE-KLHVVPGRFEFVGTN 352
              G        L G   V N L AA   +A+ ID  L+   LE +      R E +   
Sbjct: 280 FPNGYSKRITSGLLGRHHVSNILAAANAALALDIDPELIAAGLEGRAAGSRWRMERLERA 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGCG---GDRDQGKRPIM 402
                I   Y     S+   L  +  +          R   V G     GD    +  ++
Sbjct: 340 DGVSIINDAYNANPESMRAALVTLAELGLGADGAPGRRTWAVLGEMLELGDESIHQHDLL 399

Query: 403 GKIALDLADI--AIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           G++A+ +      +V     R   P    A +            +  EA     E L   
Sbjct: 400 GRMAVRMNIKKLVVVG----RGAKPAYNSAVLEGSWGDEAYYVEDVEEARALLEEQLQPG 455

Query: 460 DVLV 463
           D+ +
Sbjct: 456 DIAL 459


>gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
 gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
          Length = 488

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 154/446 (34%), Gaps = 40/446 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++AG +FV +VG + DGH F+  A   GA+A +V++  +     A++      
Sbjct: 58  VCTDSRRLEAGALFVPLVGEQFDGHAFLADAARCGAQAALVAAGSN-----ASLPEGLLH 112

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V +T       AS    +    ++AVTG++GK++    ++      G           
Sbjct: 113 WRVPDTTLAYQQLASLHRQQLNAAVVAVTGSAGKTTTRELIRAALASLGPIQAS------ 166

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                                L          V +     G  +      +      TN+
Sbjct: 167 -------ASNNNNDIGVPLTLLGTTQHHAAVVVEMGMRGPGEIERLSRCAQPDIAVITNI 219

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-- 270
           G  HI    +++A   AK  +    L  +   +I A D   +  + R        +++  
Sbjct: 220 GTAHIGRLGSREAIAAAKCEI-TAALKLDGVVVIPAGDPLLETALARVWQGRIHRVALVG 278

Query: 271 --GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G     +      A  ++Q   +++   +FD+  PL G     N L+A  +   + +D
Sbjct: 279 DPGLTNSQLPAANDLADVDEQSGVLTL--GEFDYRMPLAGRHNARNWLLARAVASGLNVD 336

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           S  ++     +     R   +G       +  +  + S    +   ++     GR   V 
Sbjct: 337 SDSLVALDVDVPGGRNRRLKLGA----LTVLDETYNASPEAVLAALDLLAQQPGRRFAVL 392

Query: 389 GCGGDRDQGKRPIM-----GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           G   +       +        +AL L  + +VT     +       AE    +  F    
Sbjct: 393 GTMLELGDESAALHRAVVERAVALKLDGLVVVTSGAEATA-----MAEAGASLERFAVVA 447

Query: 444 NRIEAIRTAIEMLNKQDVLVV-AGKG 468
           +   A       L+  D L++ A +G
Sbjct: 448 SPEAAAEPLRGWLSAGDCLLLKASRG 473


>gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 452

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 153/398 (38%), Gaps = 39/398 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +L  Q  +  +   +  I  VS +S  I+   +FVAIV    DGH FIP A++ GA
Sbjct: 3   KSLKQLATQAGLEYI-GEDVSIQTVSINSNEIKQDALFVAIV-ANRDGHDFIPSALSYGA 60

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +A++VS    +         N P +V  NT K L   A          I+++TG+ GK++
Sbjct: 61  KALLVSKKQDI---------NIPQVVCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKTT 111

Query: 129 VASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           V   +      +++    G  +  +G   T+    QD                       
Sbjct: 112 VKEMIVTLLGGKKVHFTQGNFNNYLGVPMTVLETPQDVDFAVIET--------------- 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                  S  G  +   + I+      TN+G  H++  +T       K  L + L PK+ 
Sbjct: 157 -----GTSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKAL-PKDG 210

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+  DD        +  +      S+  Q   I +     I     V I +  K++ +
Sbjct: 211 FCIVNLDDERIPAYADKL-DCNKITCSMSNQDADIIILDYQVIPELYDVKIRIFDKEYSY 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G+  + N+++A    +A  ++    L++ + +    GRF     N +   +   Y
Sbjct: 270 QLPNIGKHNLSNSMLAIASVVAARLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTY 329

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             ++ +++  + ++      ++I +       D+G+  
Sbjct: 330 NASAGAVQAAIADLAEFDGKKVIAITSMRELGDEGQNY 367


>gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 467

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 160/414 (38%), Gaps = 32/414 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL     + P    ++ +  +S D+R +QAG +FVA+  ++ DGH F+  A   GA A
Sbjct: 7   FSELSAVFGVAPEGGTDQPVTGISIDTRTLQAGDLFVALK-DQRDGHDFVSPAFKAGAAA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSS 128
            +VS  Y           +  +  V +T K L     A+R        ++AVTG++GK+ 
Sbjct: 66  ALVSEGY------VRRAEDGALFRVSDTLKALEALGRAARDRLSPDARVIAVTGSAGKTG 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               ++      G++                +  +  +   +   L+ +  +    V   
Sbjct: 120 TKEMLRACLSHLGVTHA--------------SEKSYNNHWGVPLTLARMPRETRFGVFEI 165

Query: 189 ASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +H G  +     ++  A   T +   H+++  + +A  +AK  +FE LLP    AII 
Sbjct: 166 GMNHAGEIRPLTKMVRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEGLLP-GGTAIIK 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            D+ ++  +   A   G + ++ G+  G  +    +   H+   +++ +  +       +
Sbjct: 225 FDNPHAARLKAIAERLGAKAVTFGFSAGADVCGDDLVLDHDGSTLSVRLGDRRIPLRIAM 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVD--YA 363
           PG     NAL  A    AIG D    L  L  L    GR         GG  + +D  Y 
Sbjct: 285 PGRHIAENALAVAAAIDAIGADIETALSVLAGLQPPGGRGARSVLRLDGGEALLIDESYN 344

Query: 364 HTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               S+   L  + ++      R I V G   +       +   +   + D  I
Sbjct: 345 ANPASMRAALATLASLPRQRFPRRIAVLGDMLELGADAPGLHAGLKDAVEDAGI 398


>gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
 gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
          Length = 785

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 139/414 (33%), Gaps = 44/414 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+AIVVS+A    +       +   P L   +    L    +   G      +AV G+
Sbjct: 70  RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAALV---NEYDG------IAVAGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +       G S   I     +     D                   S G  
Sbjct: 121 HGKTTTTSMIGVTLDHVGASPTII-----VGGEVPDLGTNAKLGTSRYLVSEADESDGSF 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++      TN+  DH+D++ T +    A  R F E +  +  
Sbjct: 176 LK----------------LRPHIAVVTNVEDDHMDHYGTMEKIIAA-FRQFIEQVDTDGA 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           A++  ++A  + + +          ++ Y+  +     +    +    T+   G +    
Sbjct: 219 AVLCFENANLRNIARE-TKRCVVSYAIDYEADY-RASDIETRGSLISFTVHERGAEMGHI 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NAL    +   +G++   +   L + H    RF+  G   RG  +  DY
Sbjct: 277 SLNIPGRHNVLNALACIAVARLVGVEFPAIRAALAQFHGAKRRFQTKG-KERGVWVVDDY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    + + L   R     R+I VF                     AD+ ++TD     
Sbjct: 336 AHHPTEISVTLAAARQTNPERLICVFQPHRYSRTQLLREEFGRCFADADLLLLTDIYAAG 395

Query: 423 EDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P      E +  E+        +   +R +  R   + +   D+++  G G+
Sbjct: 396 EAPIPGISGETVMEEVAKQTGQDAVYLPDRADLERYLAQQVRAGDLVITMGAGN 449


>gi|258649253|ref|ZP_05736722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
 gi|260850436|gb|EEX70305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
          Length = 430

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 142/404 (35%), Gaps = 39/404 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  EL  Q  + P         ++++D+R    G IF A+ G   +G+ F  QA+  G  
Sbjct: 2   NIKELYEQYLLHP---------QITTDTRDCPPGSIFFALRGETFNGNRFAHQALDNGCA 52

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
                          ++  +  +++VD+    L   A+    +    ++ +TGT+GK++ 
Sbjct: 53  LA--------VVDDPSVVDDDRLILVDDVLTTLQALAAFHRHQFTGPVIQITGTNGKTTT 104

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              V  +        F  G          +       P  L   L   +S  +  +   A
Sbjct: 105 KELVSAVLSERYNVLFTQG----------NFNNHIGVPKTL---LRLNASHQIAVIETGA 151

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYA 248
           +  G  +   + +    G  TN+G+ H+    + +     K  L++ L  K ++   I A
Sbjct: 152 NHPGEIKLLSEIVDPDCGLITNVGKAHLAGFGSFEGVIRTKGELYDYLRTKSDAFVFINA 211

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDF-DFLFPL 306
           D+ Y + +           ++ G  GK   ++ +V        +   ++G  + +    L
Sbjct: 212 DNPYLQPIAHDLLR-----ITYGRPGKDYDVEGEVLTCDPCLNLRFRIKGGAWQEVKTQL 266

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G + + N L A  + +  G+    +   +        R E + T +    I   Y    
Sbjct: 267 IGAYNIDNILAAVAVGVRFGVTPEQISRAIAAYCPTNNRSELLRTATN-TLIVDAYNANP 325

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            S+   L N + I     + + G   +           I   +A
Sbjct: 326 TSMAAALDNFQLIKHPHKMAILGGMRELGNASAQEHQAIIDKVA 369


>gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
          Length = 457

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 149/402 (37%), Gaps = 32/402 (7%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   ++  +       ++      +S DSR +    +F+AI G   DGH F+ + + +G 
Sbjct: 7   EINNVLGDIKNLSEGKKDFLNFKNISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVLNKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +++V+      +     + SN P  VV++T +     A     K    I+A+TG+ GK++
Sbjct: 67  KSVVI-----KKGMQKLLPSNFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTT 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +  + G           +S    +N +           L+      V  + + 
Sbjct: 122 TKEMIGGVLNKLGRIK--------LSHANFNNEIGVGLT-----ILAADIEDKVLVLEMG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
               G  ++     +      TN+G  HI    +++   +AK  +  + L  E   II A
Sbjct: 169 MRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKENITHAKCEI-SKFLNPEGVVIIPA 227

Query: 249 DDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLF 304
           +D + ++ +K          R+L++  Q + I     +   +N    TI +E   F+  F
Sbjct: 228 NDPFLEKTLKEFWKGRVIKVRLLNIANQKESIKKDDNLRGFYNPSNKTILIEENTFEISF 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
                    N L A  +   +GID A       K   V          S    IY + Y 
Sbjct: 288 EGF--HNASNFLFAYAVAKELGIDFASSN----KFDFVSLDGRNKILKSVKTTIYDESYN 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            +  S++  +KN+          +FG   +  +       +I
Sbjct: 342 ASPESVKACIKNLLE-KPRNKFFIFGSMQELGKESEKYHKEI 382


>gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 825

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 154/389 (39%), Gaps = 29/389 (7%)

Query: 27  ERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           E  I+ V +DSR +      +F A+  N+ DGH +IP+   +G    VV     + + +A
Sbjct: 21  EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYIPELYRRGVRCFVVE---EVPERAA 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  N   L V +TR+ L   A R        I+ +TG++GK+ V  ++ Q+        
Sbjct: 78  ELFGNANFLCVSSTRQALQQLAQRHREAFDIPIVGITGSNGKTMVKEWLYQLLSPQ---- 133

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                  T S  + ++++  P  ++L  + S L            S  G  Q   D IK 
Sbjct: 134 ----MVVTRSPRSYNSQIGVPLSVWLLNSHSQLGVFEA-----GISQKGEMQALHDIIKP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H +   T +     K+RLFE         +  ADDA    V+   +N G
Sbjct: 185 TIAVLTNIGSAHEENFSTPEEKCREKLRLFEG----AEIMVYNADDALVTHVLNETNNGG 240

Query: 265 CRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLC 322
             +  S       + + K+        +    +G +   +  P   E  V N+++ A +C
Sbjct: 241 QHLAWSTKSSDAAMFVTKIDKQPTHTTIHYIYKGGEPASYSLPFIDEASVCNSIICATVC 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR---T 378
           + +G+D+  + E + KL  V  R E V     G  +  D Y    NSL++ L  +     
Sbjct: 301 LHLGLDAHTIGERISKLEPVAMRLE-VKEGLNGCTLINDSYNSDINSLDIALNFMNRRPD 359

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +  +V             +  +++ 
Sbjct: 360 HNGQQRTLVLSDILQSGLPDAELYREVSS 388


>gi|253580421|ref|ZP_04857686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848151|gb|EES76116.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 467

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 89/433 (20%), Positives = 150/433 (34%), Gaps = 57/433 (13%)

Query: 62  QAIAQ-GA------EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           QA+ + GA       A  ++    +  ++A I  + P       +    L  + L G+  
Sbjct: 56  QALEKKGATIYYGQRATNITDDVDVVVYTAAIHPDNPEFACAKEKGLPMLTRAELLGQIM 115

Query: 115 ENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            N    +A++GT GK++  S V  I   +G     I     + +   + R+         
Sbjct: 116 RNYDTPVAISGTHGKTTTTSMVSHIL-LAGDCDPTISVGGILPAIGGNIRVGNSETF--- 171

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                     VT      +S                   N+  DH+D+ +      ++  
Sbjct: 172 ----------VTEACEYTNSF-------LSFFPKISIILNMDADHLDFFKDIDDIRHS-F 213

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R F ELLP +   II AD    +++++   +  C V++ G +    +             
Sbjct: 214 RRFAELLPADGTLIINADTPKYEDIIR---DLPCNVITYGLEHDADYQAADITYDKYGHA 270

Query: 292 TISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + SV     K   +   +PG   V NAL A  L   +G+   ++++ L        RF++
Sbjct: 271 SFSVLRNGVKVGSYYLKVPGIHNVSNALAAIALGHLLGLSEEVIIKGLGSFTGTDRRFQY 330

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G  + G  I  DYAH    +E  L         ++  VF                 AL 
Sbjct: 331 KGEVA-GVTIVDDYAHHPTEIEATLHAAHNYPHKKLWCVFQPHTYTRTKALLPEFAKALS 389

Query: 409 LADIAIVTDDNPR---------SEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEML 456
           LAD  +V D             SED +K   E+       P F E  N        +   
Sbjct: 390 LADHVVVADIYAARETDTLGISSEDLQKRIQELGTPCEYFPTFDEIEN------YLLSNC 443

Query: 457 NKQDVLVVAGKGH 469
            + D+L+  G G 
Sbjct: 444 QEGDLLITMGAGD 456


>gi|126729247|ref|ZP_01745061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
 gi|126710237|gb|EBA09289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
          Length = 477

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 132/385 (34%), Gaps = 29/385 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS      D S  +    
Sbjct: 23  SGVSIDTRSIAPGDLFVALKAAR-DGHDFVAQALEKGAAAALVSRIPEGVDNSEKL---- 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+VD+ +  L         +    ++AVTG+ GK+S    ++ +    G         
Sbjct: 78  --LLVDDVQTGLEALGEAARARFGGRVVAVTGSVGKTSTKEMLRTVLSEQGTVHA----- 130

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ +       V     +H G         +      
Sbjct: 131 ---------AEKSYNNHWGVPLTLARMPKDADFAVIEIGMNHPGEIAPLARMARPHVAMV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+   +  +     K  +FE L P +  AI   D A S  +  +A     + +S
Sbjct: 182 TIVAPAHLAAFENLEGIAREKASIFEGLEP-DGIAIYNGDLAVSGILRDKAAETARKSIS 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G      H      + +   V      +    F   +PG     NA+    +  A+ +D
Sbjct: 241 FGETAGTHHRLTSVQVMDACTVATGRAWRVPLLFKVMVPGRHFAMNAMGVMAVISALRLD 300

Query: 329 SALVLEHLEKLH-----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            AL +  L + +      +  +      + R     +D A+ SN   +         +G 
Sbjct: 301 RALAVNALAQWNPGAGRGLREQIRLDPVDDRLTLELIDDAYNSNPASLGAALEVLAAAGT 360

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALD 408
              V      R       M ++   
Sbjct: 361 HDHVGRRDKGRRIAYLGDMKELGAQ 385


>gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276]
 gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276s]
          Length = 450

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 162/447 (36%), Gaps = 43/447 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLS--------- 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    F       +   + L+  ++    +    + +  S     ++ L+ I+   G
Sbjct: 128 ---SVYKVFMSPKSYNSQLTLPLSVLMAD-GDEDFLLLEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             T++   H  +   +  Q     K  L E         +I  D ++ +   K+   A  
Sbjct: 184 VITHIDVQHAVHFLDKGAQGIVEEKSLLLERC----GLQLIPKDSSWFQFFAKKNSAADR 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+  +    + + +    + + V IS    D +     P      N ++A  L    
Sbjct: 240 FSFSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWIT 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            +    + +  + L +   RFE       G R+  D Y  + +++   L  +     G  
Sbjct: 296 NVPMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGK 353

Query: 385 IVVFGCGGDRDQG-----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           I +F  G   + G           + A+  A I     +  +      I  +    I  +
Sbjct: 354 I-IFILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 ++A++  +    + DV+++ G
Sbjct: 411 SAVSEIMDAVKALV---QQGDVVLLKG 434


>gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
 gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
          Length = 479

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 157/452 (34%), Gaps = 39/452 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A   +       
Sbjct: 26  RDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVAAALNAGAALAVVEKAQRDK-----FA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++ P+LVVD+  + L         +    ++AVTG+ GK+S    ++ +    G +   +
Sbjct: 81  ADAPLLVVDDVLEGLRRLGIAARSRLSAKVIAVTGSVGKTSTKEGLRSVLGAQGPTHASV 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                              P+ LA+  + +         +  +  G  +  +  ++    
Sbjct: 141 ----------ASFNNHWGVPLTLARCPAGVRYA---VFEIGMNHAGEIEPLVKMVRPHVA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-R 266
             T +   H+++    +   +AK  +F  L P    A++  D      +   A  A   R
Sbjct: 188 IITTVEPVHLEFFSGVEGIADAKSEIFSGLEP-GGIALLNRDTPMFDRLSANALRANVGR 246

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++ G        L  V    +   V  S+ G D  +   +PG     N+L        +
Sbjct: 247 IVTFGTDPAADARLLDVALHADCSAVHASILGHDVTYKIGMPGRHMALNSLAVLAAAELV 306

Query: 326 GIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTSNSLEMILKN---IRTI 379
           G D AL    + ++    GR   + +   S    +  + Y     S+   L         
Sbjct: 307 GADLALAALAMSQVQPAVGRGARKALPIGSGEATLIDESYNANPASMAAALGVLGRAEIG 366

Query: 380 TSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             GR I V       G    +  R +   +  +  D+        R+        + +  
Sbjct: 367 AQGRRIAVLGDMLELGPTAGELHRGLEAAVRANGIDLVFCCGPLMRN------LWDALSS 420

Query: 436 IPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAG 466
                  G+   A+    +  +   D ++V G
Sbjct: 421 GKRGGYAGD-ATALESQVVAAIRAGDAVMVKG 451


>gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct]
          Length = 487

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/422 (20%), Positives = 160/422 (37%), Gaps = 47/422 (11%)

Query: 9   KDFPELINQLSIFPMQ------WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           K   E+I  L    +Q        +  I  V+ +S  ++   +FVAIV    DGH FIP 
Sbjct: 22  KHMLEMIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPS 80

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AIA GA+AI+VS    L         + P +V  NT K L   A          I+++TG
Sbjct: 81  AIANGAKAILVSKKQGL---------DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTG 131

Query: 123 TSGKSSVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + GK+SV   +      +++    G  +  +G   TI     D                 
Sbjct: 132 SCGKTSVKEMIVTLLGERKVHFTQGNLNNYLGVPMTILETPHDVDFAVIEA--------- 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                        +  G  +   D I+      TN+G  H++  +T       K  L + 
Sbjct: 183 -----------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKA 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L P++   I+  DD       K          S+      I +    A  N     I + 
Sbjct: 232 L-PRDGFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRATSNSYAFKIRIF 289

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +++D+  P  G+  ++N+++A    +A+G++    L++ + +    GRF     + +  
Sbjct: 290 SQEYDYQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLT 349

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA 413
            I   Y  ++ +++  ++++      +I+ +      G + +   R +   +     D  
Sbjct: 350 LIDDTYNASAGAVQAAIEDLAEFDGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKI 409

Query: 414 IV 415
            +
Sbjct: 410 FL 411


>gi|222112153|ref|YP_002554417.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Acidovorax
           ebreus TPSY]
 gi|221731597|gb|ACM34417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           ebreus TPSY]
          Length = 482

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 148/412 (35%), Gaps = 34/412 (8%)

Query: 1   MKLQ---DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           M LQ   DL+    P          +      +  V +D+R + AG +FVA+ G + D H
Sbjct: 11  MTLQQAFDLLRARIP------GARLIGEGATPLARVHTDTRTLAAGDLFVALKGERFDAH 64

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F+ QA          + A +    +    +  P + V +T   L   A+    +    +
Sbjct: 65  QFLSQAR--------TAGAAAAIAHAGLADAGLPGIEVPDTLAALGALATGWRAQRDLPL 116

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GK++V   +  + +            +T  +F  D  +            + +
Sbjct: 117 IAVTGSNGKTTVTQMIAAVLRA----WKGDAALATQGNFNNDVGVPLTLLRLRPGHEAAV 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+ H    A+         D  +       N  R+H+++  T +A  +    +   L
Sbjct: 173 VELGMNHPGEIAN-------LADIARPTVALVNNAQREHLEFMHTVEAVAHENGSVLSAL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P +  A+  A DA++    + A    C  L+ G     +            QV I    
Sbjct: 226 -PADGTAVFPAADAFTPLWRELAGTRHC--LTFGEAAGEVRCAAAQWGDGAWQVRIDTPN 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRG 355
             FD    + G   V NAL A    +A G   A +   L     V GR   +      R 
Sbjct: 283 GAFDTRLAIAGRHNVTNALAATACALAAGGPLASIARGLAAFAPVNGRSRALAVRCGGRS 342

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             +  D Y    +S+   ++ +  +   R++V+   G   DQG +      A
Sbjct: 343 ITVVDDSYNANPDSVHAAIEVLAALPGPRLLVLGDMGEVGDQGSQFHAEAGA 394


>gi|298243532|ref|ZP_06967339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556586|gb|EFH90450.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 478

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 96/469 (20%), Positives = 167/469 (35%), Gaps = 54/469 (11%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
              E   DSR ++ G +F+AI G K DGH FI +A   GA A + +           +  
Sbjct: 31  TFTEAHHDSRQVKPGDLFIAIKGAKVDGHAFIHKAAQAGASAALCTHPVE------DVPE 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +VV +    L   A     + PE   + +TG++GK+S    +  + +R        
Sbjct: 85  GFLQIVVPDVVAALHATARARTRRQPETTYIGITGSNGKTSTKEAIAAVLERHAP----- 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T++S+  +              L          + + A   G  +           
Sbjct: 140 -TLKTLASYNTEIGYP-------LTLLRLEPQHRYAVLEMGAQWVGELKMLSGITCPDWS 191

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H+ Y  +Q+    AK  L  ++L  +  A++  DD   + +         RV
Sbjct: 192 VITNVGASHLGYFGSQEQVVIAKSELV-QVLSPDGIALLNYDDPNVRAM---NTKTSARV 247

Query: 268 LSVGY-QGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +  G  +G  +   K        +   +S + ++      +PGE  +  AL AA +  A 
Sbjct: 248 IYYGQGEGADVRASKPGGDQLFGRSFVLSYQDQEVPVQLHIPGEHGIAIALAAAAVGCAA 307

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---TS 381
           G+   ++ + LE L     R E +     G  +  D Y     S+  I + +        
Sbjct: 308 GLPLDVIRQALEDLKPAKRRGE-IKPGPNGSTLIDDSYNANRQSILAIAQAMHGSTLAPH 366

Query: 382 GRIIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
           G+   V G   +  Q  R      G     L D  +   +  R      I   I  G+P 
Sbjct: 367 GKRWAVLGDILELGQYAREEHRTCGAALASLVDYIVAIGEQARF----FIEGAIEAGLPQ 422

Query: 438 -------GFIEKGNRIEAIRTAI-----EMLNKQDVLVV---AGKGHET 471
                    +E    +EA + A      E +   D++++    G G +T
Sbjct: 423 DHAYFYSADLENSAEVEASKRAAADLLKEQVRGDDLVLIKASLGLGMDT 471


>gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. ND132]
 gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans ND132]
          Length = 462

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/490 (19%), Positives = 167/490 (34%), Gaps = 63/490 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   L     + + E  + EV +DSR ++ G +F  I G   DGH F
Sbjct: 1   MNLT------LAEVARCLGTLADEGFEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
              A A+GA A+V S      D         P+++V +TR  L   A+         ++A
Sbjct: 55  AALAAAKGACAVVASRMIGEID--------APVIMVRDTRTALGRLAACWRDTCGAKLVA 106

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++V   +  +  +               + A++ R            L   + 
Sbjct: 107 VTGTAGKTTVKEMLFAVASQK-------------FATAKNYRNFNNQIGLPTSMLKASAD 153

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q +  + +  S  G  +             TN+G  H++    +    +AK  L   L  
Sbjct: 154 QELWIMELGISRRGDMEELAPVASPDLAIITNVGPGHLEGLGNEAGVASAKTALLRYL-R 212

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTI 293
           +   A+I  D            +A      VG+ G+        A           +  +
Sbjct: 213 QGGRAVISRDYPLLWNAALELVDAP-----VGFSGRDDAESDFSAAFLGALPDGRGRFRL 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                D +   P  G     N    A     +G+    V+  ++ +   P RF       
Sbjct: 268 RTPDGDGELTAPFCGRHYAENLACVAAAAHCLGLTRDDVVGGVQAMAADPQRFCRKI--G 325

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-----KRPIMGKIAL 407
            G  +  D Y     S+   L+  R +  G   +V   G  R+ G     +   +G++  
Sbjct: 326 GGITVIDDTYNANPLSMANALRTARELA-GERPLVLVLGDMRELGAEAVLRHEELGRVIR 384

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML--NKQDVLVVA 465
           + A   +    +           ++  G  GF+ +   ++    A   L  ++   ++V 
Sbjct: 385 ETAPAMVFYKGDH--------FLDVERGFGGFMRRAGDVDEFLEAWRELCISEG-AVLVK 435

Query: 466 GK---GHETV 472
           G    G E  
Sbjct: 436 GSRSLGMELY 445


>gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 452

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 159/417 (38%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FVAIV    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQGL---------DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNYLGVPMTILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +    A  N     I +  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  ++N+++A    +A+G++    L++ + +    GRF     + +   I   
Sbjct: 269 YQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      +I+ +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLAEFDGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 438

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 141/454 (31%), Gaps = 39/454 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I   +   +   +  ++  S DSR  + G +FV IV  + DGH FIP A+  GA   +  
Sbjct: 8   IAAATGGTLHGPDATVDSASIDSRSARPGQLFVPIVAAR-DGHDFIPSAVQAGAPVYLTD 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A                + V +T + L+     +    P +++ VTG+ GK+S    + 
Sbjct: 67  RAPD-------PALGATAVQVADTAEALADLGRFVRAGLPGSVVGVTGSVGKTSTKDLLA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                        G   T    A   +            L          + + A   G 
Sbjct: 120 -------------GVLGTTFRTAASEKSFNNELGLPLTLLGAPDDTEAVVLEMGARGVGH 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                       G  T +   H++   +      AK  L E L P +  A++ AD     
Sbjct: 167 IAQLCSIASPTVGVLTRVEAVHLEMFGSLDDVAQAKGELVEAL-PADGLAVLNADHPV-- 223

Query: 255 EVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            V         RVL+ G            V     +   T+              GE QV
Sbjct: 224 -VAAMTSRTSARVLTYGVDPGADVRATDIVLDDELRASFTLHSPWGTTAVRLGARGEHQV 282

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA     IG+    + E L   ++   R E   T +    I   Y     S+   
Sbjct: 283 SNALAAAAAGGGIGVPIEKIAEGLLGANLSGLRMELSTTAAGVTIINDAYNANPTSMAAG 342

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +  I +GR   V G   +          ++A     + +             I  + 
Sbjct: 343 LSALARIDAGRRFAVLGTMAELGDDSAAAHREVADQAVALGVT-----------VIAVDE 391

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                G         A+  A+  L   D ++V G
Sbjct: 392 PAYGAGVTHVSGVDGAV-DALGDLRSGDAVLVKG 424


>gi|147678195|ref|YP_001212410.1| UDP-N-acetylmuramate--L-alanine ligase [Pelotomaculum
           thermopropionicum SI]
 gi|189029016|sp|A5D144|MURC_PELTS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146274292|dbj|BAF60041.1| UDP-N-acetylmuramate-alanine ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 461

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 148/414 (35%), Gaps = 47/414 (11%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V S+A    +       +   P++   +    L+    R  G      +AV G  G
Sbjct: 64  ADLVVASTAIPPDNIELVEARKRGLPVMHRADL---LAWLMRRQKG------IAVAGAHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++  S    + +++G+    +  G  S I   A+  R             S+L      
Sbjct: 115 KTTTTSMTALVLEKNGMDPTIVIGGELSEIGGNAKLGRGEYLVAEADESDGSFLK----- 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +  +    TN+  DH+DY+++ +    A  R F   +P+   
Sbjct: 170 ------------------LDPVIEIITNIEDDHLDYYRSVENILAA-FRRFMAKVPESGL 210

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           A+   DD   +E++   ++  C   ++        ++ +  +       +   G      
Sbjct: 211 AVACLDDPRLRELLA-GYDRPCLTYALDNPEADYTMRNIRLMRQVTAGDVYYRGGFLGCL 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   + NA+ A  +   +G+    +   L+       RF+  G    G ++  DY
Sbjct: 270 ELSVPGRHNLSNAMAAVAVGRFVGLAFEGIAAALKDFRGAGRRFQLTG-EVNGIKVIDDY 328

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH  + ++  LK    + +GR++ VF                 A + AD+ I++D     
Sbjct: 329 AHHPSEIKATLKAAGQVKTGRVVGVFQPHRYTRTLFLGERFGEAFEDADVVIISDIYSAG 388

Query: 423 EDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P      + I + I        I    R E +   ++M    D+++  G G 
Sbjct: 389 EKPIEGVSAKTIVSAIEKHNGRKVIYLPTRQEIVDYLVQMARPGDMILTMGAGD 442


>gi|288958919|ref|YP_003449260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
 gi|288911227|dbj|BAI72716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
          Length = 498

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 135/396 (34%), Gaps = 31/396 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V+ DSR +  G +FVAI G   DGH F+             + A  +      + ++ 
Sbjct: 30  TGVAIDSRKVAPGDLFVAIRGPNFDGHAFVGA------ALAAGAVAALVDHPPDGLPADA 83

Query: 91  PILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P+L+   +  + ++             I+ VTG+ GK+     ++ +    G +    G 
Sbjct: 84  PLLIAPVDPLEAMAAMGVVARANCGARIIGVTGSVGKTGTKETLRHVLSAQGATYATEGS 143

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGS 208
            +                  +  +L+ L +     V     +H  +   L   +K     
Sbjct: 144 LNN--------------HWGVPLSLARLPADSAYGVFELGMNHAGEIGPLSRQVKPHVAI 189

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGCRV 267
            T +   H+++    +A  +AK  +FE L P    A++  D+  Y++       +    V
Sbjct: 190 ITTVEAAHLEFFSGVEAIADAKAEIFEGLDP-NGVAVLNRDNGQYARLAAAARRHGLSHV 248

Query: 268 LSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              G  +     L           VT  + G+   +    PG   V N+L       A+G
Sbjct: 249 WGFGTDEKADARLLDCSLHATCSAVTAVIRGERLQYCLSQPGRHWVMNSLSVLLAVKALG 308

Query: 327 IDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---T 380
            D A     L  L  V GR     +        +  + Y  +  ++   L+ +  I    
Sbjct: 309 GDVATAARALSSLPSVKGRGTRRRIQLPQGAFTLIDESYNASPAAMAATLEVLGKIDPGA 368

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            GR + V G   +       +   +A  L    + T
Sbjct: 369 GGRRVAVLGDMRELGDRADALHIALAEPLRAAQVDT 404


>gi|149186201|ref|ZP_01864515.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
 gi|148830232|gb|EDL48669.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
          Length = 469

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 139/416 (33%), Gaps = 44/416 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V S+A    +          I VV        L   R       + +AV GT GK
Sbjct: 67  GAAVVVTSTAVRRTNPEVAHALENRIPVVRRAEMLAELMRLR-------STIAVAGTHGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  +    G     +     I  +  + RL     +                  
Sbjct: 120 TTTTSMIASLLD-CGAIDPTVINGGIIEQYGSNARLGDSDWM-----------------V 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA        RLDG        TN+  +H+D++       +A +  F   +P    A++
Sbjct: 162 VEADESDGSFLRLDGT---IAVVTNIDPEHLDHYGDFDGVKDAFVE-FIHNVPFYGAAVL 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------EGKDF 300
             D    + V+ +  +          Q     +  V       +  + V      + +  
Sbjct: 218 CIDHPEVQAVIGKVRDRRVVTYGFNLQADICGV-NVQPHEGGNRFDVIVRQRGEEDRRIE 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   P+PG   V NAL A  + I +G    ++         V  RF  VG+ + G  +  
Sbjct: 277 NVCLPMPGRHNVQNALAAIAVSIEMGCPDEVICNGFSSFGGVRRRFTNVGSVA-GATVID 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +  +L+  R  T  R+I V                + + + AD   +T    
Sbjct: 336 DYGHHPVEIRAVLEAAREATKNRVIAVMQPHRYTRLHDLMDDFQSSFNEADQVYITPVYA 395

Query: 421 RSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             EDP E + AE +       G        +R +  +     + + D++V  G G 
Sbjct: 396 AGEDPIEGVSAEALVEGLKSRGHRNAATVEDRDDLAKKLATDVEEGDLVVCLGAGD 451


>gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
 gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27]
 gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma
           whipplei TW08/27]
 gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
          Length = 464

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 164/446 (36%), Gaps = 44/446 (9%)

Query: 29  KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            IN  +  DSR+I  G IFVA  G K DGH F+ QA   GA   +V+    +        
Sbjct: 27  PINGRLKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQSGASLAIVTRVQEI-------- 78

Query: 88  SNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P L+V N  + +   A       +    ++ +TG++GK++  S +  +  + G +  
Sbjct: 79  -DLPQLLVGNVTEAMHAIAGFKLCLSRDTITVIGITGSNGKTTTKSVLAYVLSKFGNTVA 137

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +    F        P   YL              +   A   G            
Sbjct: 138 THGNQNNEIGFPITVSRIEPLTKYL-------------VLEYGAFKPGDIDCLKKIAVPD 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                + G  H++   + ++  + K  L    LP+ S  ++  DD     +     + G 
Sbjct: 185 IAVLLSAGHAHVEKSGSLESVCSMKAEL-ARDLPEGSKVLLNYDDPRIARL-----SVGN 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R      +        V     K +  ++ +    +    L G+ QV N L A    + +
Sbjct: 239 RYYFGTDKRAHFRASHVETNIIKTRFIVTYQKGSVEVETKLIGKHQVSNVLAALSTLVLL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           G D+ +   ++ +++ + GR +++        I+  Y  +  S++  L ++  +   + R
Sbjct: 299 GFDAEVCARYISEVNPIDGRMQYIPL-GDFSIIHDAYNASFESVKCALDSLVVLGSLAKR 357

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP---RSEDPEK-IRAEIIHGIPG- 438
            I V G   D  +  + +  ++     D    TD N     SE     I  E+  G+P  
Sbjct: 358 RIAVLGRIHDMGELAQDVYRQLVKQFLD----TDINLLVIVSEKQMYLIAKELAKGVPNK 413

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLV 463
             +   +   A     ++ +  D+++
Sbjct: 414 EIVWFEDLETAKHEIFDLFSPGDIVL 439


>gi|270340250|ref|ZP_06007583.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
 gi|270332023|gb|EFA42809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
          Length = 458

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 145/395 (36%), Gaps = 34/395 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNT 90
           EV++DSR+     IF+A+ G   DG+ F   A+ +G   A++    Y  +       ++ 
Sbjct: 33  EVTTDSRNCPKDSIFIALKGASFDGNKFAKAALDKGCSYAVIDEKEYDDE-------ADD 85

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+        A     +    ++ +TGT+GK++    +  +         +    
Sbjct: 86  RIILVDDCLLTYKELAREHRRQFDIPVIGITGTNGKTTTKELLSAVLSE------KYNVM 139

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T  +F  D  +           L    +  +  V + AS  G  +  +D ++   G  T
Sbjct: 140 HTEGNFNNDVGVP-------KTLLRLNKTHDIAVVEMGASHVGDIKKLVDYVEPTCGLIT 192

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269
           N+GR H+    + +    AK  L++ L    +P  +   + +   ++  AH     R++S
Sbjct: 193 NVGRAHLQGFGSFEGVMQAKGELYDYLKACHAPVFLNTSNEH---LVDMAHQRRLERIIS 249

Query: 270 VGYQGKFIHLKKVCAI-------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G         +V +                       +    L G + + N L A  + 
Sbjct: 250 YGQDDGAQVWGEVMSCDPFLKLQWGASHAEHHSPTSMQEVSTHLVGAYNLDNVLAAITVG 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381
           +  G+    + + LE       R +FV T SR   I   Y     S+   + N   ++ +
Sbjct: 310 LHFGVSEEQIRQALESYTPSNNRSQFVET-SRNRLIIDAYNANPTSMAAAIDNFERMSMT 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              + + G   +  +       KIA  L    I T
Sbjct: 369 QPRMAILGDMRELGEVSEEEHQKIADSLKASDIDT 403


>gi|295704237|ref|YP_003597312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294801896|gb|ADF38962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 287

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 11/270 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + IN ++  S+ +  G +F +I G  EDGH +I +AIA+GA A+  +S   L+  S    
Sbjct: 22  QTINYLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAIARGAVAVFGTSIEKLRLLSTQY- 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S+   L VD+ RK ++ F+   +    E I  + VTGT+GK++VA++V+ +     L + 
Sbjct: 81  SHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRSLLTLLKLPTG 140

Query: 146 QIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG T   SS      + +  TTP  + L K    L ++G     +E SS  +DQ R++ 
Sbjct: 141 SIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAIDQQRVEN 200

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I       TNL  +H++YH+T + Y   KM+LF++       A+I  DD    + + R  
Sbjct: 201 IYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQ----AKHAVINIDDQDMGKDLSRLF 256

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                  S+    +     K      +   
Sbjct: 257 EGPKVTYSLLNNAEANSASKKYYCQRRGLF 286


>gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/11023]
          Length = 450

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 160/447 (35%), Gaps = 43/447 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLS--------- 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    F       +   + L+  ++    +    + +  S     ++ L+ I+   G
Sbjct: 128 ---SVYKVFMSPKSYNSQLTLPLSVLMAD-GDEDFLLLEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             T++   H  +   +  Q     K  L E         +I  D ++ +   K+   A  
Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERC----GLQLIPKDSSWFQFFAKKNSAAER 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+  +    + + +    + + V IS    D +     P      N ++A  L    
Sbjct: 240 FSFSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWIT 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            +    + +  + L +   RFE       G R+  D Y  + +++   L  +     G  
Sbjct: 296 NVPMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGK 353

Query: 385 IVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           I+         G   D+    +  K       I  V +   +      I  +    I  +
Sbjct: 354 IIFILGHMAELGRYSDECHIAVARKAVTKAHIIFFVGE---KWFPVRDIVRDADCQIGFY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 ++A++  +    + DV+++ G
Sbjct: 411 SAVSEIMDAVKALV---QQGDVVLLKG 434


>gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 452

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 158/417 (37%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FVAIV    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQGL---------DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTQGTLNNYLGVPMTILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +    A  N     I +  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  + N+++A    +A+G++    L++ + +    GRF     + +   I   
Sbjct: 269 YQLPNIGKHNLLNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      +I+ +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLAEFDGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 477

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 144/396 (36%), Gaps = 28/396 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +   + DSR ++ G +F A+ G + DGH F+ QA+A GA   V++   + +       
Sbjct: 23  VTVEGGTVDSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGAVIARPLA-EVLPDGAP 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             T ++ V +TR+ L+  A  +  +     ++ +TG+ GK++       +  R       
Sbjct: 82  PGTAVVEVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKEMAAAVLARRFAVLKS 141

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +T                     L       V  + +     G         +   
Sbjct: 142 AGNYNT-------------DVGLPLTLLDLEERHQVAVLEMAMRGLGEIARLAAIAEPDV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  T +   H+++  + +    AK  L E L P++  AI+ A D         A     R
Sbjct: 189 GVVTVVAESHLEFLGSLERVAQAKGELVEAL-PEDGVAILNAGDPRV---RAMAARTRAR 244

Query: 267 VLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLC 322
           VL+ G+ G+   ++ V   H      +  + V G D       +PG   V  AL AA + 
Sbjct: 245 VLTFGHDGEGADVRAVNVEHRGAAGSRFRLEVPGGDAATVELAVPGPAAVTCALAAAAVG 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+D+A +   L +      R E +            Y  +  S    L  +R +   
Sbjct: 305 VALGLDAATIAAGLAEARPAALRNE-IRQAGPWTLYIDCYNASPTSTRAALHALRQVAGS 363

Query: 383 RIIVVFGCGG----DRDQGKRPIMGKIALDLADIAI 414
           R  V          D         G+ A   AD+ +
Sbjct: 364 RRAVAILGDMFELGDWAVEGHRETGREAARTADVLL 399


>gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
 gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
          Length = 478

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 150/419 (35%), Gaps = 44/419 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           EV  DSR +  G +FVA  G K DG+ +I  A+  GA  +  S   +        R +  
Sbjct: 28  EVEIDSRRVGEGSLFVAFAGEKVDGNSYIDAALDAGAAVVCASVEPAQATLEHARRVDAT 87

Query: 92  ILVV--DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQ-------ICQRSG 141
           +L    D+  +FL   A      H +  ++AVTG+ GK++    ++        +   +G
Sbjct: 88  LLRAEGDDCEEFLLRLAGAWRALHQDWTVVAVTGSVGKTTTKDMLRAGIATQRRVHATAG 147

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI                    LS      V       +  G        
Sbjct: 148 NHNNLIGLPMTI--------------------LSAPKDAEVLVCECGMNHKGEILRLTRC 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY----ADDAYSKEVM 257
            +      TN+G  HI    +++    AK  + E +                D  S    
Sbjct: 188 CRPTIAVITNVGTSHIGLLGSRENIACAKAEIVEGMEAHGDIRPTLILESGGDFTSFVSE 247

Query: 258 KRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYN 314
           K A   G  V+ VG + G  +  + V            ++ +G      F +PG   V +
Sbjct: 248 KFARPKGIDVVCVGSHAGDILRAQDVTVGEESLPTATFVTQDGWKKTVTFSVPGRVAVSD 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           AL+A      +G+D  + L+ +  +     R   V     G RI  D Y  + +S+   L
Sbjct: 308 ALMALEAITLLGLDRDMALDAIATMPPTRMRLS-VLHAVCGARIIDDSYNASPSSMAAAL 366

Query: 374 KNIRTITS-GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVTDDNPRSEDPEK 427
             +  + + GR I + G  G+  Q ++ + G     +A    D+ +    +   E  E 
Sbjct: 367 DVLSRMPTRGRRIAILGEIGELGQEEKRLHGYVGAYVAAKPIDLVVFVGKDAAREMAEA 425


>gi|256394930|ref|YP_003116494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256361156|gb|ACU74653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 447

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 141/443 (31%), Gaps = 44/443 (9%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           + D R  + G +FVA  G   DGH F+ Q           ++         T  ++ P +
Sbjct: 30  ALDGRKAEPGGLFVAFAGEYADGHDFVDQ-----------AARAGAAAVLGTRPTSLPTV 78

Query: 94  VVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           VV + R+ L   A  +  +      ++ VTG+ GK+     +  +   +  +    G  +
Sbjct: 79  VVQDAREALQRLAKHVVDRLRPGLTVVGVTGSQGKTGTKDLIAAVLSSAAPTVATAGSLN 138

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                            +L              + + A   G      D +        N
Sbjct: 139 NELGVPLTMLRADAETRFL-------------VLEMGARHVGDIAALTDLVAPDVAVVLN 185

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H+    ++ A    K  L + L P    A++ ADD     V          +L+ G
Sbjct: 186 VGRAHLGEFGSRGAIAKTKAELVQGLAP-GGTAVLNADDP---RVAAMHTLTDGPLLTFG 241

Query: 272 Y--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    L  V     +   T+           PL G  Q  NA  A    +A G+  
Sbjct: 242 RAEHADVQVLYLVLDRLGRPSFTVRTADARAVVTLPLIGAHQSLNAAAAVTAGLAAGVPL 301

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
               + L    +   R E  G       +   Y    +S    L  +  I + R I V G
Sbjct: 302 EAATKALATASLSKWRMELRGLAGGATLLNDSYNANPDSTRAALDALAAIEAARRIAVLG 361

Query: 390 CGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
              +     + +   +G+ A   ADI +             I        P  +   +  
Sbjct: 362 EMRELGPSTETEHRAIGRYAAHRADIIL-----AVGAPAHPIA---TAAGPRALTLPDND 413

Query: 447 EAIRTAIEMLNKQDVLVV-AGKG 468
            A+    E L   DV++V A +G
Sbjct: 414 AALAWLREHLAAGDVVLVKASRG 436


>gi|89890158|ref|ZP_01201669.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
 gi|89518431|gb|EAS21087.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
          Length = 417

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 143/375 (38%), Gaps = 37/375 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V +D+R I+ G +F A+ G   DG+ ++ QA+ +GA   V S      + S T     
Sbjct: 12  KGVQTDTRKIENGQLFYALSGENFDGNEYVEQALTKGAIHAVSSDHKWKNNPSVT----- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
              VV++  K L   A+         I+++TG++GK++       I    G      G  
Sbjct: 67  ---VVEDPLKNLQALATYHRKALDIPIISLTGSNGKTTTKEL---ILSVLGQQFNVKGTL 120

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +++                  LS+  S  +  V + A+     +          G  T
Sbjct: 121 GNLNNHIGVPLT----------ILSFDKSTEIGVVEMGANHLKEIEKLSTIALPDYGLIT 170

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++   +++     K  LFE L      AI+     + +E +KR+          
Sbjct: 171 NYGKAHLEGFGSEKNIIIGKSELFEHLKAHGKTAIV---GHWDQEQLKRSQGIE------ 221

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +FI       I  +  +++  EG+  D    L GE+  +N L+AA +     + + 
Sbjct: 222 ----RFITSTDSKLIKAEPYISLEFEGQKSD--TQLIGEYNYHNMLLAAAVGQIFNMSTT 275

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L  L +      R + + +++    I   Y    +S+ + L N+        I V G 
Sbjct: 276 SILNGLSQYTPNNNRSQIIQSDNVKI-ILDAYNANPSSMSVALSNLSKQKESHKIAVLGD 334

Query: 391 GGDRDQGKRPIMGKI 405
             +  +  +    KI
Sbjct: 335 MFELGKYSKTEHQKI 349


>gi|258593035|emb|CBE69346.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [NC10
           bacterium 'Dutch sediment']
          Length = 475

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 149/425 (35%), Gaps = 49/425 (11%)

Query: 56  GHL--FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + +     A+ +V SSA S ++          I V+        L   +     
Sbjct: 56  GHDPAHVQE-----ADVVVRSSAVSPENPEIVAAKAHAIPVIQRAEMLAELMRMKYG--- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S V  +  ++GL      PT  I                    
Sbjct: 108 ----VAVAGTHGKTTTTSMVATVLAKAGLD-----PTVVIGGRLDALGSNAK-------- 150

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 +G   V+    S G        +       T +  +H+DY++  Q      +  
Sbjct: 151 ----LGRGEFMVAEADESDGSFLK----LAPTIAVVTTVDAEHLDYYRDLQQIKETFLE- 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVT 292
           F   +P    AI+  D  + ++++        RV+S G      +  + V          
Sbjct: 202 FINKVPFYGSAILCLDQEHIRDLLPMVQK---RVVSYGCHTQADLMAEGVSLTGLSSTFK 258

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+   +    +PG   V NAL A  + + + I+ A +   L +   V  RF+ V  
Sbjct: 259 VRFKGEPLGEVQLRIPGVHNVSNALAAMAVGLELDIEFAAIRTALGEFSGVVRRFQ-VKG 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + +   +  DYAH    ++  LK  R     R+IV+F         +       A D AD
Sbjct: 318 SPQDIMVVDDYAHHPAEIQATLKAARDGFGRRLIVIFQPHRYSRTQRLLPEFASAFDFAD 377

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVV 464
             I+T   P  E P       +I   ++      +    R E I    IE+    D+++ 
Sbjct: 378 QVIITGIYPAGETPIAGVSGRQIADGVVVRKGPKVLYVERKEEIPDRVIELARPGDLVIT 437

Query: 465 AGKGH 469
            G G 
Sbjct: 438 MGAGD 442


>gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 496

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/489 (19%), Positives = 163/489 (33%), Gaps = 47/489 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+   +          ++    V  DSR + +G +FVA+ G K DGH +   A
Sbjct: 1   MITLRLDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAATA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPIL----------VVDNTRKFLSLFASRLYGKH 113
           + QGA  ++ +    +        +                V    + ++  A  +  K 
Sbjct: 61  MDQGAAGVLAARPVGVPAVIVPPATEVDHHSYATEHDTDGSVAAVLEGMAKLARHVVDKL 120

Query: 114 PEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ +TG++GK+S    V  I + +G +    G  +            T +  YL
Sbjct: 121 SARGLTVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCTETTKYL 180

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S             A S G   H         G   N+G  H+    ++     AK
Sbjct: 181 VSEMS-------------ARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIARAK 227

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L E L P +  A++ ADD Y   +  R         ++    +           ++  
Sbjct: 228 GELVEAL-PADGIAVLNADDDYVAAMADRTSATVWSFSTLHKPVRVAATDIRLDNLSRPT 286

Query: 291 VTISVEG-----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            T+                 + GE QV NAL AA   +A G+D A V + L    V    
Sbjct: 287 FTLIGTDSQKVTHTAQVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSAH 346

Query: 346 FEFVGTNSRGGRIYVD-YAHTSNSL-----EMILKNIRTITSGRIIVVFGC----GGDRD 395
              V        +  D Y     S+      + L   +     R I V G     G D  
Sbjct: 347 RMDVHHAGNDVIVIDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDAT 406

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                +M  +A    D+ +V   +   E+   +           I   +  +A    +++
Sbjct: 407 ADHVELMRTVAEQGIDLVVVVGTD---ENARAMINAAAAMGLRAIPTADTTQAATEVLKV 463

Query: 456 LNKQDVLVV 464
           L + DV++V
Sbjct: 464 LGRGDVILV 472


>gi|254449024|ref|ZP_05062478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
 gi|198261418|gb|EDY85709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
          Length = 452

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/451 (20%), Positives = 155/451 (34%), Gaps = 39/451 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              +  +     D+R +Q G +F A+ G + DGH F+ QA   GA A VV          
Sbjct: 18  HGDDCHVKGACIDTRALQKGQLFFALSGTQRDGHEFVAQAAEAGASAAVVERYLE----- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                + P  VV + R  L   A+    +  E   +A+TG++GK++V   ++QI    G 
Sbjct: 73  ---DVDLPQCVVSDARLALGHLAAWWRAQLNETRFVALTGSNGKTTVKEMLKQILSAVGS 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G                         L          + + AS  G  ++     
Sbjct: 130 TCATQG-------------NFNNDLGLPLTLLRVGREHQFAVLEMGASQFGEIEYLTQVA 176

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K       N G  H+D  +        K  ++  L  K   AII ADD ++     R+  
Sbjct: 177 KPDVALVNNAGPAHLDGFKDISGVARGKGEIYNGLGEK-GIAIINADDIHADYW--RSLC 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAA 319
           A   V+S G +       +  +      + +    ++        PL G     NA+ AA
Sbjct: 234 ADKTVVSFGLENSADVQGQWSSQTKTLNLQVGGDKLDSGSVLIKLPLSGRHNARNAVAAA 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +A G+D   V + L K+  V GR   +        I   Y     SL   +     +
Sbjct: 294 AVALAAGVDLDAVEKGLSKVRPVAGRMVPMTARGGFYLIDDTYNANPASLMAGIDVALDM 353

Query: 380 TSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                + +       D  +     +G+         + T      E  +        G  
Sbjct: 354 QRPVWLALGDLAELGDNSETVHAQLGEQVQQRGVQRLFTL----GEQSKNAAERFGEGAA 409

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            F    +  EA+   IE L  +DV+++  KG
Sbjct: 410 AF----DSPEALAQQIETLATRDVVLLV-KG 435


>gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 420

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 133/361 (36%), Gaps = 35/361 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +DSR +++G IF A+ G+  +G+ F  +A+  GA AIV+       ++     +N+
Sbjct: 12  KGICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASAIVLDEIIENLNY-----NNS 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +  V N    L  FA+    K  + I+ +TG++GK++V   +  +  +   +    G  
Sbjct: 67  DVFFVKNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQGYSTHATEG-- 124

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   L+   S  +  V + A+  G  +   +      G  T
Sbjct: 125 --------NYNNHIGVPLTL---LNIRDSHDIAIVEMGANHIGEIKALCEISLPDYGYIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G  H++     +     K  L+E L    S + +  +D+ +        N   + +  
Sbjct: 174 NFGLAHLEGFGGIEGVIKGKSELYEHLDKNNSISFVNPNDSIA------LKNCNSQNIEF 227

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                F +   +          + V   + + L  L G +Q  N L A  +     ++ +
Sbjct: 228 TDGVNFFYKSGL----------LGVSFGNEEILTNLTGSYQENNVLAAITIGRNFELEDS 277

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + +        R +   T  +       Y     S+E  L+N   +      V    
Sbjct: 278 KIAKGIANYIPQNNRGQIFKT-GKNTIFLDAYNANPTSMEASLRNAVNLYKKMPHVYIAG 336

Query: 391 G 391
           G
Sbjct: 337 G 337


>gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 453

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 162/437 (37%), Gaps = 46/437 (10%)

Query: 40  IQAGWIFVAIVGNKEDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           ++  ++++ +  +K D   +     + QAI  GA AI+V            I    P ++
Sbjct: 36  VKPEYLYIYLTYSKSD---YNPNPDVEQAIKNGAAAIMV---------PCKIDCKVPQII 83

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V+NT   L         K    ++AVTGTSGK+S    +  +         +     T+S
Sbjct: 84  VENTDTALRTLCKHYRKKFDIPVIAVTGTSGKTSTKDLIALVLSE------RFNTHKTLS 137

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           +      +           L    +  ++ + +   S+G  +  +D ++   G  T++G 
Sbjct: 138 NVNDLIGVPM-------TTLQINDTHQISVIEIGLRSYGHIKKGVDIVRPSIGVITSIGT 190

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            HI    +++    AKM +      K    II  DD     ++        +++ +   G
Sbjct: 191 AHISSFGSKENIMKAKMEVATYF-DKNDILIINGDDP----LLSTIKEKPYKIIRISLNG 245

Query: 275 KFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           K  +  K      ++ V      +G++  F   +PG   VYNA+ A  +     I+   V
Sbjct: 246 KGEYNAKDVRDLGEKGVEFKCDYKGEEHLFKLKVPGIHNVYNAMFAIAIGDLFDIEVDDV 305

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              + K      R   V   +    I   Y    +S++  +  +++    + I V G   
Sbjct: 306 KRGIVKFQPDNLRVNIVKMKNNAKIILDCYTSELDSMKAGINVLKSFGGNKKIAVLGSMY 365

Query: 393 ---DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
              +  +     +G+  +   DI +    N R  + E    + + G         + EA 
Sbjct: 366 GCGNLTEEIHREIGRYVIGKCDILVTVGGNARYINEEA--KDKLEG----KHCETKEEAC 419

Query: 450 RTAIEMLNKQDVLVVAG 466
                ++ K DV+++ G
Sbjct: 420 SYLKNIIQKDDVILING 436


>gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
 gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
          Length = 457

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 172/467 (36%), Gaps = 45/467 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     EL + +         ER    V +D+R    G +FVA+ G + D H  +  A 
Sbjct: 1   MIRMTGQELADAVRGRLENGDGERVFEGVFTDTRQPLEGGLFVALRGPRFDAHEHV--AA 58

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A  ++V     +           P +VV +T + L   A     +    ++A+TG++
Sbjct: 59  DLPAAVLLVERVLDVPH---------PQVVVADTGEALGRLAQHWRRRSRARVIALTGSN 109

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ I +  G      G  +                I +   L  +       
Sbjct: 110 GKTTTKEMLRCILEGVGSVHATQGNLNN--------------EIGVPLTLLAMPEDTDYA 155

Query: 185 VSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           V    ++H  +  R+    + +    TN GR H++   + +   +AK  +F  L  +   
Sbjct: 156 VIEMGANHAGEIGRMARWTEPMVAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGT 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I  DD ++   +    +  C+  S+   G+   + +        ++ +++ G   D  
Sbjct: 216 AVINLDDPFADYWLSLNEHHHCQRFSLEGGGEIEGVWQA-----PDRLRLTILGAGRDLR 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
              PG     NA+ AA    A+G+    +   L     V GR + +   S G R++ D Y
Sbjct: 271 LASPGRHVAANAIAAAAAANAVGVAIDAIANGLAGWTPVQGRLQELWHVS-GARLWDDTY 329

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL-ADIAIVTDDN 419
               +SL   L+ +  +   RI+V+   G             G +A  +  D  +   + 
Sbjct: 330 NANPDSLRAGLEVLAAMPGRRILVLGAMGELGAETPVLHRETGALARAMGVDYCLALGEA 389

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R  D  +   E             R+EA      +L  +  +++ G
Sbjct: 390 AR--DSAEAFGEGGEWFADHDALRTRLEA------LLEDETTVLIKG 428


>gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
 gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
          Length = 825

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 150/404 (37%), Gaps = 29/404 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +        +  I  + +DSR +      +F A+   + DGH +IP+   +G 
Sbjct: 5   IEKVTTLIGARRYGDNDTNIGFILTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +  VV+   ++    A+       L V NT + L   A R   +    I+ +TG++GK+ 
Sbjct: 65  KNFVVT---NVPKGYASDYPGANFLKVVNTLEALQRLAERHRDEFNIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+   S           T S  + ++++  P  ++L    +      V      
Sbjct: 122 VKEWLYQLLSPS--------MFVTRSPRSYNSQIGVPLSVWLMNEQTQ-----VGVFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+      TNLG  H +   + +     K+ LF          I   
Sbjct: 169 ISMPGEMLALRDIIQPTIAVLTNLGAAHQENFSSMEEKCREKLILF----HDAETVIYDG 224

Query: 249 DDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD    +V+    +        S+       ++K +    +   +T   +G++  F  P 
Sbjct: 225 DDEVINKVIAEYPDYKGEKLFWSLKNAEAPFYVKNIEKQQSVTVITYIYKGEEDSFSIPF 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
                V NA+++A +   +G+ +  + + + +L  V  R E V     G  +  D Y   
Sbjct: 285 IDNASVQNAIISAVVASKLGLSAEDIDKRMTQLEPVAMRLE-VKVGQHGCTLINDSYNSD 343

Query: 366 SNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            NSL++ L  +         R  ++        Q    +  +++
Sbjct: 344 INSLDIALDFMNRRPDHRGRRHTLILSDIYQSGQAPEALYKEVS 387


>gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 452

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 159/417 (38%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FVAIV    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQGL---------DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTKGNLNNYLGVPMTILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +    A  N     I +  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  ++N+++A    +A+G++    L++ + +    GRF     + +   I   
Sbjct: 269 YQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      +I+ +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLAEFDGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|328542962|ref|YP_004303071.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [polymorphum gilvum SL003B-26A1]
 gi|326412708|gb|ADZ69771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polymorphum gilvum SL003B-26A1]
          Length = 476

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 157/450 (34%), Gaps = 39/450 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +Q G  FVAI G + DGH F+  A          + A   +D    + ++
Sbjct: 27  IGGISIDSRTLQPGDAFVAIEGERFDGHDFVAAA-----LEAGAALALVARDRLERLPAD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VVD+  + L   A     +    I+AVTG+ GK+     ++   +RSG +   +  
Sbjct: 82  GRYVVVDDPLEALRGLARAARARSHARIVAVTGSVGKTGTKEALRLALERSGRTHASV-- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                        +  +   +   L+ + +        +  +  G     +  ++     
Sbjct: 140 ------------ASFNNHWGVPLTLARMPADTDYGVFEIGMNHAGEITPLVALVRPHVAI 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267
            T +   H+++  + +    AK  +F  L P    AI+  D+A    +   A NAG   +
Sbjct: 188 ITTVQPVHLEFFGSVEKIAQAKAEIFTGLEP-GGVAILNRDNAQFDLLTFLARNAGVTEI 246

Query: 268 LSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            + G   +     +  A+      +   V G+D  +    PG   V N+L      + +G
Sbjct: 247 RTFGEDPQADAFPQRVAMQTGSSSIQARVLGQDITYKIGAPGRHLVKNSLAVLLAVVELG 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHTSNSLEMILK---NIRTIT 380
            D AL    L  L    GR          G    +D  Y     S+   L+   + +   
Sbjct: 307 ADLALAGIALGDLSAPKGRGAQTRLRLPAGVATLIDESYNANPASMRAALQVLGDAQVSP 366

Query: 381 SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            GR I V G   +     D     ++  +     D+      + R         E++   
Sbjct: 367 PGRRIAVLGDMRELGEAADTLHAGLIEPVTAARVDLVYCAGPHMRR------LWELLPVH 420

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                            E L   DV+++ G
Sbjct: 421 RRAAYAEEAAGLAAMLKEDLRPGDVVMIKG 450


>gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9768]
 gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/11074]
 gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9301]
          Length = 450

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 161/447 (36%), Gaps = 43/447 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +   Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNCANQLLS--------- 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    F       +   + L+  ++    +    + +  S     ++ L+ I+   G
Sbjct: 128 ---SVYKVFMSPKSYNSQLTLPLSVLMAD-GDEDFLLLEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             T++   H  +   +  Q     K  L E         +I  D ++ +   K+   A  
Sbjct: 184 VITHIDVQHAVHFLDKGAQGIVEEKSLLLERC----GLQLIPKDSSWFQFFAKKNSAADQ 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+  +    + + +    + + V IS    D +     P      N ++A  L    
Sbjct: 240 FSFSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWIT 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            +    + +  + L +   RFE       G R+  D Y  + +++   L  +     G  
Sbjct: 296 NVPMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGK 353

Query: 385 IVVFGCGGDRDQG-----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           I +F  G   + G           + A+  A I     +  +      I  +    I  +
Sbjct: 354 I-IFILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 ++A++  +    + DV+++ G
Sbjct: 411 SAVSEIMDAVKALV---QQGDVVLLKG 434


>gi|19704793|ref|NP_604355.1| histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19715132|gb|AAL95654.1| Histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 613

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 153/412 (37%), Gaps = 46/412 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 177 LKDFSEILKREKLNELIFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 232

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +         T   +  I+ V +T   +   A +   K    ++ +TG+
Sbjct: 233 LDKGASLVIADN---------TDVKDERIIKVSDTIATMQDLAIKYRKKLDIQVVGITGS 283

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +         +     T  ++                 L+    +   
Sbjct: 284 NGKTTTKDIVYSLLS------VKAKTLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 330

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + + 
Sbjct: 331 VLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVNKENT- 389

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y  ++          V  +G+     +  +     +K      ++GK+++  
Sbjct: 390 -FVCGDDKYLAKL---------DVNKIGFNNSNTYKIESYKFSDKGS-KFVLDGKEYEM- 437

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   IG+    +   L+++ +   RF+ +        I   Y 
Sbjct: 438 -SLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISNMRFQEIKI-GEDIYINDAYN 495

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  S++  +  +  I +    + + G   +    +      +   L D  I
Sbjct: 496 ASPMSMKAAIDTLNEIYNDKYKVAILGDMLELGDNEIDYHIDVLNYLLDKKI 547


>gi|260495144|ref|ZP_05815272.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
 gi|260197201|gb|EEW94720.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
          Length = 609

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 155/413 (37%), Gaps = 48/413 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 173 LKDFSEILKREKLNELIFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  +V  +         T   +  ++ V +T   +   A++   K    ++ +TG+
Sbjct: 229 LDKGASLVVADN---------TNIKDKRVVKVIDTIATMQDLATKYRKKLDIQVVGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +               T  ++                 L+    +   
Sbjct: 280 NGKTTTKDIVYSLLSTKAK------TLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  K + 
Sbjct: 327 VLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNT- 385

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +  DD Y  ++          V  VG+ +     ++     +   +  +  +GK+++ 
Sbjct: 386 -FVCGDDEYLGKL---------DVNKVGFNENNDYKIESYEFSNKGSKFVL--DGKEYEM 433

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  + N  +   L   IG+    + + L+++ +   RF+ +        I   Y
Sbjct: 434 --SLLGKHNISNTAITIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI-GEDIYINDAY 490

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  S++  +  +  I +    I + G   +  + +      +   L D  I
Sbjct: 491 NASPMSMKAAIDTLNEIYNDKYKIAILGDMLELGENEINYHIDVLNYLLDKKI 543


>gi|254303960|ref|ZP_04971318.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324152|gb|EDK89402.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 608

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 152/412 (36%), Gaps = 46/412 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 173 LKDFSEILKREKLNDLLFEEFSKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDV 228

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +G   ++  +         T   +  IL V NT   +   A++   K    ++ +TG+
Sbjct: 229 LDKGVSLVIADN---------TDVKDERILKVSNTIATMQDLATKYRKKLDIQVIGITGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +               T  ++                 L+    +   
Sbjct: 280 NGKTTTKDIVYSLLSAKAK------TLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 326

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + + 
Sbjct: 327 VLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVNKENT- 385

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y  ++          V  +G+     H K      + +     ++GK++   
Sbjct: 386 -FVCGDDEYLAKL---------DVNRIGFNDNNNH-KIESYEFSDKGSKFILDGKEY--K 432

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   +G+    +   L+++ +   RF+ +        I   Y 
Sbjct: 433 ISLLGKHNISNTAIAIELAKKVGLTDEEIQSGLKEIKISNMRFQEIKI-GEDIYINDAYN 491

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  S++  +  +  I +    I + G   +  + +      +   L D  I
Sbjct: 492 ASPTSMKAAIDTLNEIYNDKYKIAILGDMLELGENEVDYHIDVLNYLLDKKI 543


>gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
          Length = 450

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 161/447 (36%), Gaps = 43/447 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLS--------- 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    F       +   + L+  ++    +    + +  S     ++ L+ I+   G
Sbjct: 128 ---SVYKVFMSPKSYNSQLTLPLSVLMAD-GDEDFLLLEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             T +   H  +   +  Q     K  L E         +I  D ++ +   K+   A  
Sbjct: 184 VITYIDVQHAMHFLDKGAQGIVEEKSLLLERC----GLQLIPKDSSWFQFFAKKNSAADR 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+  +    + + +    + + V IS    D +     P      N ++A  L    
Sbjct: 240 FSFSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWIT 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            +    + +  + L +   RFE       G R+  D Y  + +++   L  +     G  
Sbjct: 296 NVPMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGK 353

Query: 385 IVVFGCGGDRDQG-----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           I +F  G   + G           + A+  A I     +  +      I  +    I  +
Sbjct: 354 I-IFILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 ++A++  +    + DV+++ G
Sbjct: 411 SAVSEIMDAVKALV---QQGDVVLLKG 434


>gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 457

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 153/407 (37%), Gaps = 32/407 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +    +  +++  +       R+      +S DSR +    +F+AI G   DGH F+P+ 
Sbjct: 2   EFFLSELNDVLGNIRNLRESKRDFLSFKNISIDSRTLLKNDLFIAIKGKNFDGHSFLPEV 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +G +++V+      +     + SN P  VV++T +     A     K    I+A+TG+
Sbjct: 62  LNKGVKSVVI-----KKGMQRLLPSNFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    +  +  + G           +S    +N +           L+      V 
Sbjct: 117 VGKTTTKEMIGGVLNKLGRIK--------LSHANFNNEIGVGLT-----ILATDIEDKVL 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +     G  ++     +      TN+G  HI    +++   +AK  +  + L  E  
Sbjct: 164 VLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITHAKCEI-SKFLNPEGV 222

Query: 244 AIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
            II A+D + ++ +K +        ++L++  Q + F     +   +N  + TI +E   
Sbjct: 223 VIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEENT 282

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+            N L A  +   +GID A       K   V          S    IY
Sbjct: 283 FEISLEGF--HNASNFLFAYAVSKELGIDFASFN----KFDFVSFGGRNKILKSLKTTIY 336

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + Y  +  S++  +KN+          +FG   +  +       +I
Sbjct: 337 DESYNASPESVKACIKNLLE-KPRNKFFIFGSMQELGKESEKYHKEI 382


>gi|288574847|ref|ZP_06393204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570588|gb|EFC92145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 458

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 150/396 (37%), Gaps = 36/396 (9%)

Query: 23  MQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           ++  + + +  +  DSR I+ G +FVA+ G   DGH FI  A ++GA   +VSS++  + 
Sbjct: 21  LKGDDGEFSGLIRVDSRKIEEGDLFVALSGKNMDGHDFILDAFSRGAHCALVSSSWGEK- 79

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--QR 139
               +     ++ V +  + L   A        +N++AVTG+ GK+S    +        
Sbjct: 80  -IRDLPEGIRVIEVADPEQGLIKIARHRLKGL-KNVIAVTGSVGKTSTREMIFLALGGSS 137

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           SG+   +    + I        +   + + + +              +  +  G     +
Sbjct: 138 SGVYRARSSHNTRIGCALTVAEMPEDTSVLILE--------------MGTNHPGEISEMV 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMK 258
           D   +     T +   H++   + +   +AK+ + E   P     I   D+   S  V +
Sbjct: 184 DLYPVDTAVITEIAPAHLEGLGSLEGVLDAKLEILES--PNLRKVIFNGDNPMLSSAVKE 241

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVY 313
           R+     + LSVG  G ++ L+ +     ++ V   + G+      +     L G     
Sbjct: 242 RSFGKNWQALSVGSSGSYV-LEDIRLEWQERPVLSMIIGEKQGRSSYGIKAKLTGIHNAS 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEM 371
              +A    + +GI        L  +    GR        RGG + +D  Y     S+E 
Sbjct: 301 LLGIAWATAVELGISPEEASIRLSSIKPYHGRG---VLKDRGGILVLDESYNANPKSMEA 357

Query: 372 ILK--NIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +L           + +++ G  G+  +G   +  +I
Sbjct: 358 LLDLVAQSPFPREKRLLILGEMGELGEGSLSLHEEI 393


>gi|224536424|ref|ZP_03676963.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521979|gb|EEF91084.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 432

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 161/440 (36%), Gaps = 38/440 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+  +++  A         +  ++
Sbjct: 14  TSVTTDSRNCPEGSLFIALKGDNFNGNAFAAKALESGSAYVIIDEA------EYALAGDS 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V+N    L   A+    +    I+ +TGT+GK++    +  +  +     +  G  
Sbjct: 68  HYILVNNCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELMAAVLSKKYNVLYTQG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L +  +      +  + + AS  G  +  +D  +   G  T
Sbjct: 126 --------NLNNHIGVPLTLLRLRA---EHDLGIIEMGASHPGDIKELVDITEPEYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L   K S   I+ D+ Y + + +     G  ++S
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDYLRERKNSTIFIHHDNLYLRNMAR-----GLNLIS 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   +      V               +G+  +    L GE+   NAL A  +     +
Sbjct: 230 YGSADELYVNGHVTGNSPYLIFEWRAGKDGESHEVKTQLIGEYNFANALAAVTIGHFFEV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            S  +   L +      R +   T      I   Y     S++  + N R +     +++
Sbjct: 290 ASEKIDAALREYTPQNNRSQLKQTADN-TLIIDAYNANPTSMQASISNFRNMEVENKMLI 348

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            G   +  +       KIA  LA+           +D   +  +       F    +   
Sbjct: 349 LGDMRELGKDGPKEHQKIADFLAECG--------FKDVMLVGEQFAAAKHNFPTYPD-AP 399

Query: 448 AIRTAIEMLNK-QDVLVVAG 466
           A+   ++        +++ G
Sbjct: 400 AVIEVLQKSKPHGKTILIKG 419


>gi|134298544|ref|YP_001112040.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
 gi|189029171|sp|A4J2B2|MURC_DESRM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134051244|gb|ABO49215.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 89/414 (21%), Positives = 149/414 (35%), Gaps = 51/414 (12%)

Query: 70  AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+V S+A S ++     T R   P++      +   + A  +  K     +AV G  GK+
Sbjct: 71  AVVYSTAISPENPEILETQRLGIPLI------RRGQMLARLMKEK---KGIAVAGAHGKT 121

Query: 128 SVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +  S    I + +      I  G  S I   A+                     QG   V
Sbjct: 122 TTTSMTALILEENSFDPTIIIGGDLSNIGGNAK-------------------LGQGEYMV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S G        +       TN+  DH+DY+ T++    A  R F   L  E  A+
Sbjct: 163 AEADESDGSFL----LLDPNIAVVTNIEDDHLDYYGTRENIAKA-FRQFLAKLSAEGLAV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I  DD   KE+        C+V++ G    G    +K +   +   Q  +  + +    L
Sbjct: 218 ICLDDPVLKEI---TTGLTCQVVTYGSLGSGADYQIKVLETRNGVNQGEVYFQEERLGML 274

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   + NA+ A  +   + +D   +   L K      RF+ +G    G  +  DY
Sbjct: 275 ELHVPGYHNLLNAMAAVAIGRHLNLDFEKIARALRKFTGAKRRFQVIG-KVNGITVVDDY 333

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    ++  L+  RT   GRI+ +F         +       +    D+ I+TD    S
Sbjct: 334 AHHPTEVKATLQAARTSHPGRIVTIFQPHRYSRTKQLFKEFGQSFTNGDLIILTDIYAAS 393

Query: 423 EDPEK------IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P +      I   I +      +      +A     +  N  D+++  G G 
Sbjct: 394 ELPLEGVHTKLILDAIPLQEGQQVLYLPTLKDAADYLADYANPGDLVLTMGAGD 447


>gi|56459543|ref|YP_154824.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178553|gb|AAV81275.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 467

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 134/403 (33%), Gaps = 25/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      +  Q+    +   +  I+ VS+D+R      +F+A+ G   D H F+ Q   
Sbjct: 1   MISVSLKWIAEQVEGRLI-GSDCTIDAVSTDTRADLTDALFIALKGKNFDAHDFVEQ--- 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
                  ++   +       + S    ++V+N+R  L    + +  K     +AVTG++G
Sbjct: 57  ------AIAKGAAAIICEKKVDSECRQIIVENSRHALGRLGAAIKAKVAPKTVAVTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I         +    +T  +F  D  +           L          V
Sbjct: 111 KTTVKEMLAAILS------IRHPVLATQGNFNNDIGVP-------LTLLRLQEEHKYAVV 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  D +K       N+   H++   +      AK  +F   +  +  AI
Sbjct: 158 ELGANHPGEISYTTDLVKPDVAILNNVSAAHVEGFGSLHGVARAKTEIFRG-VGGQGTAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D  +     +   +   +   +                     T+ + G+       
Sbjct: 217 TPRDSEFYPCWQRACSDMQWKTFGLSDSADVYASDVTLNSEGHPSFTLHLGGETKQLELK 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   V NAL AA     +GI    +   L+++    GR   +  +     I   Y  +
Sbjct: 277 LSGRHNVLNALSAAAAASELGISLNDIANGLQQVQPAQGRLTTIKVSDHLRIIDDTYNAS 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             S +  L  + +   G  I V G  G+     R     I   
Sbjct: 337 VASTKAALDLLGSY-QGYRIFVLGDMGELGADARAYHEDIGEH 378


>gi|313159807|gb|EFR59163.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes sp. HGB5]
          Length = 414

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 141/441 (31%), Gaps = 60/441 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I+ G +F A+ G   DG+ F   A+++GA  +VV       D  A +  +  +
Sbjct: 14  ISTDTRRIEPGSVFFALHGATFDGNRFAADALSKGAAYVVV-------DDPAAVSGDRTV 66

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +T + L   A     +    ILA++G++GK++    V ++           G    
Sbjct: 67  L-VGDTLEALQELAREYRRELAIPILAISGSNGKTTTKELVSRVLAERFEVYATHG---- 121

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L+         V + AS+ G         +   G  TN+
Sbjct: 122 ------NLNNHIGVPLTL---LAMTRDTEFGVVEMGASACGEIALLASIAEPNYGILTNI 172

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++     +     K  L + L      A +  +D     +            SV  
Sbjct: 173 GRAHLEGFGGPEGIRRGKGELLDYLAANGGRAFVPREDQTLTNMAAERDGLAAEYYSVTL 232

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                H                           L G++  +N   A  +     ID   +
Sbjct: 233 ADGIAH--------------------------HLEGDYNRFNIAAAVAVGRYFDIDGERI 266

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG 391
              +        R +   T  R   I   Y    +S+    L  +     GR   V   G
Sbjct: 267 RHAVGSYMPDNNRSQRTETE-RNTLIVDCYNANPSSMRASVLNFLAEPAGGRSRRVLILG 325

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNR 445
              + G          +  DI  +   NP +E      +  +  A +           +R
Sbjct: 326 DMLELGAWSEQ-----EHRDIVALAARNPDAELMLVGGEFARACAGMEPQPANTALFPSR 380

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            E I        +   ++V G
Sbjct: 381 EELIAELRRRPVENAFVLVKG 401


>gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
 gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
          Length = 469

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 134/402 (33%), Gaps = 34/402 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + K++ +S D+R +Q G +FVA+   + DGH F+ QA+ +GA A +V+           +
Sbjct: 21  DWKVSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQALDKGAGAALVT------HRPDGV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P+L+V++ +  L         +    ++A+TG+ GK+S    +  +    G +   
Sbjct: 74  AADAPLLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKTSTKEMLACMLADQGRTHAA 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
           +               +  +   +   L+ +       V     +H G         +  
Sbjct: 134 V--------------ASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPH 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++  +        K  + E L P    A++ AD   ++ +   A   G 
Sbjct: 180 VAMVTTVAAVHLEAFEDVAGIAREKAAIMEGLEP-GGVAVLNADIDEAQVLAAEAQGLGV 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G       L             +    +         G     NAL A     A 
Sbjct: 239 AHQWFGESATEYKLLSTKISGEATLAEVRCGPEQMQLTIQSLGAHFAMNALGALACVAAA 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTIT-- 380
           G D     + L     V GR   V     GG++      Y     S+   L  +      
Sbjct: 299 GADVQRAAQVLSLWSPVQGRGARVEVAMEGGKLLLLDDSYNANPTSMAAALAVLAATPDL 358

Query: 381 ------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                  GR I   G  G+    +  +   +A   A   I T
Sbjct: 359 GADAGVKGRKIAYLGDMGELGPQEVALHAGLADLAALETIDT 400


>gi|332829642|gb|EGK02288.1| hypothetical protein HMPREF9455_01558 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 428

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 158/434 (36%), Gaps = 59/434 (13%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I++L     Q+ E     VS+D+R+     IF A+ G   +G+ +  +AI  G    +V 
Sbjct: 3   ISELYKIYKQYPE-----VSTDTRNSPKDSIFFALKGANFNGNEYAEKAIDSGCSYAIVD 57

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV- 133
                    +   +   I++V++    L   A+    +    ++ +TGT+GK++    + 
Sbjct: 58  E--------SKYATRPNIILVEDCLDTLQKLANHHRKQLKTPVIGITGTNGKTTTKELIT 109

Query: 134 ------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
                   +    G  +  IG   T+                    L       +  + +
Sbjct: 110 SVLSQEYNVLATQGNLNNHIGVPLTL--------------------LRIKKEHEIAIIEM 149

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246
            AS  G  +   +      G  TN+G  HI+   + +    AK  L+E +   ++    I
Sbjct: 150 GASHVGEIKVLSEMAMPNYGVITNIGHAHIEGFGSYENVIKAKGELYEYIRSTRDGKIFI 209

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D++  +E+     + G   +  G +       KV +I    +       +       L
Sbjct: 210 DYDNSLLREM-----SEGITSIYYGLEEDLFISGKVLSIRPFLEFEWKFGTRRNKVKTNL 264

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE+ + NAL A  +   +G+ ++L+ + +E+      R +   T+     I   Y    
Sbjct: 265 IGEYNLSNALAAITIGKYLGVKASLICKAIEEYQPTNNRSQLKETDRNM-LIIDAYNANP 323

Query: 367 NSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDN--- 419
            S+   L+N   +     +++       G D D   + +   ++    D  I   DN   
Sbjct: 324 TSMHAALENFDHMDVNHKVLILGDMKELGPDTDLEHQKVADYVSHHNFDRVIFVGDNFSR 383

Query: 420 -----PRSEDPEKI 428
                PR +D + +
Sbjct: 384 IITDYPRFKDLDSL 397


>gi|114327097|ref|YP_744254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315271|gb|ABI61331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 459

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 96/446 (21%), Positives = 163/446 (36%), Gaps = 46/446 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R ++   +FVA+ G+  DGH     A+A+GA  ++                  
Sbjct: 25  HGVSIDTRTLEPADLFVALQGDNGDGHDHAEAALARGAAGVLAHRDGPG----------- 73

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L+V++T   L         +    + AVTG+ GK++    ++      G         
Sbjct: 74  PRLLVNDTMSALQALGRFARDRFHGTVFAVTGSVGKTTTKEMLRTALAPFGPVHAAY--- 130

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
                       +  +   +   L+ L     + V     +H  +   L  + +      
Sbjct: 131 -----------ASYNNHWGVPLTLARLPESARSCVVEIGMNHAGEIAPLAALARPHVAII 179

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T + R HI +  + +A  + K  LF  L   +  AI+ AD      +M +A  A  RV++
Sbjct: 180 TTVERSHIGHLGSIEAIADEKAALFSGL-AADGVAIMPADSPMLPRLMAQA--APHRVMT 236

Query: 270 VGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G     +  L+++ A  +  ++ I V G+        PG     NAL A     A G D
Sbjct: 237 FGTDANSMVRLQQIEAATDSSRLDIVVRGQSLSCTIGAPGRHMAMNALAALSAVDAAGFD 296

Query: 329 SALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHTSNSLEMILKNIRTITSGRII 385
                  LE  H + GR        + G  + +D  Y  +S S+   L  +R   + R I
Sbjct: 297 PHPAAAALENFHALAGRGAKRSIALNDGQAVLLDESYNASSASIRAALDVLRLTPASRRI 356

Query: 386 VVFGCGGDRDQGKRPIMGKIALD---LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           VV G   +           +A D    AD+A       R      +   +   + G  E 
Sbjct: 357 VVLGDILELGDQAVAEHAGLAQDIAACADLAFTCGPMMRH-----LFDALPASVRGAHEA 411

Query: 443 GNRIEA--IRTAIEMLNKQDVLVVAG 466
            +   A  +  AI      D ++V G
Sbjct: 412 DSASLAPVVSAAI---RDGDTILVKG 434


>gi|239621197|ref|ZP_04664228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515658|gb|EEQ55525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 517

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 99/500 (19%), Positives = 186/500 (37%), Gaps = 43/500 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +     ++ D+R +    + +   G  +    ++      G  A V  + YS    
Sbjct: 34  IASADEPFAGITYDTRKVTPDAL-LCCKGQFK--AEYLNGIDEAGLAAYVAETEYSA--- 87

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQR 139
                + TP L+V++ RK +SL ++  YG +P+N L V G +G       + F Q +   
Sbjct: 88  ----ATATPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGTKGKTTTSYFTQALINA 142

Query: 140 -SGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            SG  +                ++ LTTP  +   + +   +  G+ ++ +E SS     
Sbjct: 143 VSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEVSSQAYKV 202

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            R+ G+     +F N+  DHI    H T + Y   K     +++      ++ AD  ++ 
Sbjct: 203 DRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCK----RQIIVNAKSLVLGADSLHAD 258

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKD---FDFLFPLPG 308
            + + A  AG  V +               +         +  +   D    D+   + G
Sbjct: 259 LLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAHASFHIADGDQALGDYHLSIDG 318

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTS 366
           +F   NA  A  +  A+G+      + L  +  V    R E            VDYAH  
Sbjct: 319 DFNYLNAAAAIAIAHAVGVSLDDA-DALHAIESVRIAGRMEQFRDPQSNTLAIVDYAHNY 377

Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            S+  +L  +         RI +V G  G++   +R  + + A +     I T ++  +E
Sbjct: 378 ASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAAENRIANFIFTAEDTDTE 437

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIV 475
               I  E+   I           +R+ AI  AI       ++ ++L++ GKG+E     
Sbjct: 438 PIIDICMEMQGYITNKDVVSTVISDRLTAITNAIYDARAHADRFNILLIIGKGNERWIKD 497

Query: 476 TNGEKKMSVDCDIIREILGL 495
                    D  ++  + GL
Sbjct: 498 HRKHVPFDGDDHVVERMFGL 517


>gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 478

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 85/475 (17%), Positives = 172/475 (36%), Gaps = 45/475 (9%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            ++   +I      P + +   I+ V+ DSR+++ G +FVA+ G + DGH ++ +A   G
Sbjct: 10  AREAAAIIGAAVFSPSERKTVTIDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAARAG 69

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENI-LAVTG 122
           A A++V    S  ++   A   +++ ++V  V++    L   +     +    + +AVTG
Sbjct: 70  ASAVLVDHEKSACVEGGWAAFATHSGLVVMTVEDPLVALQRLSRWWIDRFDTLVRIAVTG 129

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++    +  +      +    G                 S I L  AL  +     
Sbjct: 130 SSGKTTTKELLGSVLSMKAPTVVNPGNL--------------NSEIGLPLALFGVGPADH 175

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V     +   +   L  +        TN+G  H      ++  F  K ++    +  E
Sbjct: 176 FGVFELGINRIGEMELLSSLYHPQHLLITNIGTAHSGPLGGKEGVFREKTKVLAH-MQGE 234

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                  DD     +  R  +   R            L+ V  +  +  + +   G    
Sbjct: 235 GFVFYPEDDDRIDALKSRYPSLAFRPYG---PATLTGLETVEDLGTEGWL-LRYRG--VS 288

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             +PL G+  + N      L   +G+   L+   L     V GR   +        +  D
Sbjct: 289 IHYPLLGQHNLQNGCGVIALAFELGVSPELIGAALSAAAPVAGRCRLL---RGAISVLDD 345

Query: 362 -YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIV 415
            Y    +S E + + I ++   GR ++VFG   +         R     IA    D   +
Sbjct: 346 CYNANLDSSERVFEYIASLPWDGRKVIVFGSMKELGSSSLDAHRAAGQAIASSGVDAVFL 405

Query: 416 ----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               T ++ R    +   ++I+H      ++ +        +  + + D++++ G
Sbjct: 406 YGEETSESFREISDQGSMSQILHFSENQFDELS-----ERLLAFVREGDLVLLKG 455


>gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11A3]
          Length = 457

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 162/466 (34%), Gaps = 38/466 (8%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   ++  +       R+      +S DSR +    +F+AI G   DGH F+P  + +G 
Sbjct: 7   ELNNVLGDIKNLSEGKRDFLNFKNISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVLDKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +++V+      +     + SN P  VV++T +     A     K    I+A+TG+ GK++
Sbjct: 67  QSVVI-----KKGMQRLLPSNFPYWVVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKTT 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +  + G           +S    +N +           L+         + + 
Sbjct: 122 TKEMIGGVLNKLGRIK--------LSHANFNNEIGVGLT-----ILATEIEDKALVLEMG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
               G  ++     +      TN+G  HI    +++    AK  + + L P E   II A
Sbjct: 169 MRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITYAKCEISKYLNP-EGVVIIPA 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +D + ++ +K         + +      +  F     +   +N    TI +E   F+   
Sbjct: 228 NDPFLEKTLKEVWKGRVIKVRILNIENKKDSFKKENNLRGFYNPSNKTILIEENIFEISL 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
                    N L A  +   +GID A       K              S    IY + Y 
Sbjct: 288 EGF--HNASNFLFAYAVAKELGIDFASFN----KFDFAILGGRNKILKSVKTTIYDESYN 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            +  S++  +KN+      +  +       G   ++  + I   I     +  +   D  
Sbjct: 342 ASPESVKACIKNLLEKPRNKFFIFGSMQELGEQSEKYHKEIFNLINNSDIEKCVFICD-- 399

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  EK     +     F+   N  +  +   +   K D +++ G
Sbjct: 400 --KKNEKSYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSVLIKG 443


>gi|150388000|ref|YP_001318049.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|189028968|sp|A6TJM2|MURC_ALKMQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149947862|gb|ABR46390.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus metalliredigens
           QYMF]
          Length = 460

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 153/409 (37%), Gaps = 43/409 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    IR+    + + +  + L     +      E  +AV G+ GK++  
Sbjct: 73  LVVYTAAVKADNPERIRAEELGIPLADRAEMLGQIMKKY-----EKAIAVAGSHGKTTTT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + S L    +            N     S  ++ +A  Y+ S    +      
Sbjct: 128 SLISLLMEYSNLDPTIL--VGGELDEIGGNIKIGQSQHFITEACEYVESFLKFY------ 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G   N+  DH+DY +  +   +A  + F + +PKE   I   DD
Sbjct: 180 -------------PFIGIILNIDEDHLDYFKDIEHIKSA-FKKFAQRIPKEGFLIASYDD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDF-DFLFPLP 307
           A+ +E+   + +  C V++ G + K   +        +      +S EGK    F   +P
Sbjct: 226 AHVREI---SRDLDCHVITYGIKTKSQFMAHNIEFSFEGLPSFDVSFEGKTIGSFSLNIP 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   VYN+L A      +G+D   + +H+ +   +  RF+ +G   +G ++  DYAH   
Sbjct: 283 GLHNVYNSLAAIATTYVLGVDPVAISKHITRFKGIHRRFDLLG-EVKGAKVIDDYAHHPV 341

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L+  +     +I  VF                 +  LAD  I+TD     E  E 
Sbjct: 342 EIRATLEAAKKYPHKKIWCVFQPHTYSRTQALLKDFAKSFYLADHVIITDIYAAREKDEG 401

Query: 428 IRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKGH 469
           I      G+   I + +  + I       R   + +   D+++  G G 
Sbjct: 402 IVNS--QGLVNLIVQEHPAQYIGGFEEISRYLYDHIEAGDIVLTMGAGD 448


>gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis G/11222]
 gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-EC]
 gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-LC]
          Length = 450

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 162/447 (36%), Gaps = 43/447 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLS--------- 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    F       +   + L+  ++    +    + +  S     ++ L+ I+   G
Sbjct: 128 ---SVYKVFMSPKSYNSQLTLPLSVLMAD-GDEDFLLLEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             T++   H  +   +  Q     K  L E         +I  D ++ +   K+   A  
Sbjct: 184 VITHIDVQHAVHFLDKGAQGIVEEKSLLLERC----GLQLIPKDSSWFQFFAKKNSAADR 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+  +    + + +    + + V IS    D +     P      N ++A  L    
Sbjct: 240 FSFSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWIT 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            +    + +  + L +   RFE       G R+  D Y  + +++   L  +     G  
Sbjct: 296 NVPMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGK 353

Query: 385 IVVFGCGGDRDQG-----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           I +F  G   + G           + A+  A I     +  +      I  +    I  +
Sbjct: 354 I-IFILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFY 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 ++A++  +    + DV+++ G
Sbjct: 411 SAVSEIMDAVKALV---QQGDVVLLKG 434


>gi|124023586|ref|YP_001017893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963872|gb|ABM78628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 465

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 155/458 (33%), Gaps = 44/458 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ +  + +DSR +  G  FV +VG   +GH F+ QA+   A+A VV+           +
Sbjct: 26  DQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEAQAAVVARKDHHP-----V 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P  +V++T +           +    ++AVTG++GK++    ++      G     
Sbjct: 81  PEGLPHWIVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTTRELIRSALTPLGEVLAS 140

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G                         L   S  G   V +     G  +      +   
Sbjct: 141 AG-------------NNNNDVGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCTQPDV 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  H+    ++ A  +AK  +    L      +I A D+  ++ ++R      R
Sbjct: 188 AVITNIGNAHVGRLGSRAAIASAKCEI-TTCLKPRGVIVIPAGDSLLEDALERIWRG--R 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQV--------------TISVEGKDFDFLFPLPGEFQV 312
           V+ V  Q          A  +++ +               + +EGK +    PL G    
Sbjct: 245 VIRVAVQDNQQLEPPEIADLHRRPLPKADLVGCVDLAKGELLLEGKAY--TLPLEGMHNA 302

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEM 371
            N ++A  +   + +      E L  L V                +    Y  +  +++ 
Sbjct: 303 CNLMLALAVARELDV----CNESLSNLKVDVPGGRSRRLKVGNFTVLDETYNASPEAVQA 358

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +  I  GR   V G   +       +  ++A     I +       +    +  A 
Sbjct: 359 ALE-LLAIQPGRHFAVLGTMLELGDQSVALHRQVAERAVQIGLDGLVVVAAGAEAEAMAT 417

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
               +P      N  +A +     L   DV+++ A +G
Sbjct: 418 AAESLPHLAVVANPEQAAQPLQAWLEAGDVVLLKASRG 455


>gi|260201273|ref|ZP_05768764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 256

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 83/244 (34%), Positives = 111/244 (45%), Gaps = 11/244 (4%)

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPG 308
           D  +   M         V +      +            QQ T I   G        LPG
Sbjct: 3   DDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPG 62

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + V N LVA  +   +G+     +  L ++  VPGR E +    +G    VDYAH   +
Sbjct: 63  RYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEA 120

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  I
Sbjct: 121 LRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAI 179

Query: 429 RAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           R EI+ G          +E  +R +AIR A+      DV+++AGKGHET      G  + 
Sbjct: 180 RREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRP 238

Query: 483 SVDC 486
             D 
Sbjct: 239 FDDR 242


>gi|229820900|ref|YP_002882426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
 gi|229566813|gb|ACQ80664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
          Length = 474

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 150/458 (32%), Gaps = 47/458 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V  DSR   AG +FVA+ G   DGH ++  A   GA   +V+              + 
Sbjct: 28  EGVVIDSREATAGSLFVALPGEHVDGHAYVRVAHENGATTSLVTRLVPD-------AGDG 80

Query: 91  PILVVDNTRKFLSLFASRLYGKH------PENILAVTGTSGKSSVASFVQQICQRSGLSS 144
             ++VD+ ++ L   A  +  +       P  ++ +TG+ GK+S    + ++    G+  
Sbjct: 81  AQVLVDDAQRALGDLARHVLARRREVADEPPVVVGITGSVGKTSTKDLLAEVLAPLGVVH 140

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +                              V    + A + G   +       
Sbjct: 141 APPGSLNNELGLPLTVLRAPQDAR-------------VVVAEMGADAPGNLTYLTSIAPP 187

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                  +GR H+    +  A    K  L   L P    A++ ADD     + + A    
Sbjct: 188 DVAVVLTVGRAHLAGFGSVDAVAATKSELVSGLAP-GGFAVLNADDERVAAMARLAP--- 243

Query: 265 CRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            RV++ G                + A      V  + +G++      L GE  V NAL A
Sbjct: 244 -RVVTFGSGDAVPPPSVGARDVTLDAAGRAAFVLTTPDGEEVPVTLALVGEHHVTNALAA 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
           A + + +GI +A V   L            V     G  +  D Y     S+   LK + 
Sbjct: 303 AAVGLGLGIAAADVAGALANAGARSPHRMHVVERPDGVTVVDDAYNANPESVRAALKALV 362

Query: 378 TITSGRIIVVFGCGG-----DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAE 431
            I       V   G      D  + +   +G++A+    D  +V  +  R+         
Sbjct: 363 AIAGRERRSVAVLGEMLELGDSSRDEHDAVGRVAVRLNVDKLVVVGEGARAMHTGASHEG 422

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   +   +   A       L   DV++V + KG
Sbjct: 423 --SWGDEALFAPDLDAARAYLATELRPGDVVLVKSSKG 458


>gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Treponema denticola F0402]
          Length = 430

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 150/431 (34%), Gaps = 44/431 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+      L+ + S             V  DSR+++   +F+ + G  +DGH++I
Sbjct: 15  MTLDELLTSTGAWLVYESSSSKAFSS------VVMDSRNVKNNSLFIPLRGENQDGHVYI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI----RSNTPILVVDNTRKFLSLFASRLYGKHP-E 115
             A+  GA+  VV   Y  ++ +A +      +   + V N  K L   A     K P  
Sbjct: 69  EPALKNGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNL 128

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + +TG+SGK++    +  I  +      +    ST  +                    
Sbjct: 129 YKIGITGSSGKTTTKEILASIYSK------KYNTVSTKGNLNS-------ETGLPLSVFE 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +  +  G        +   A   TN+G  HI    T+QA    K  +F 
Sbjct: 176 VRPEHEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFS 235

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K+       +  ++  +      +   V +V      +  K   A     ++    
Sbjct: 236 --FFKDDALGFIPECEFTDFLKDVPRGS---VFTVSDNDSSLVQKVEDAGVLGSKIFYRG 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E    + LFPLPG + V NAL+   L    G  +  +   LE +  + GR + +     G
Sbjct: 291 E----EILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGRSQVL----HG 342

Query: 356 GRIY--VDYAHTSNSLEMILKNIRTI---TSGRIIV--VFGCGGDRDQGKRPIMGKIALD 408
              Y    Y    +S++  ++   +I    +   ++  +   G   D   + I+      
Sbjct: 343 FVTYFLDCYNANPDSMKSAIEFCDSINTECAKHYVLASMLELGAKSDYEHKKIIEDALKS 402

Query: 409 LADIAIVTDDN 419
            AD      D+
Sbjct: 403 NADNLYFFGDD 413


>gi|307084812|ref|ZP_07493925.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
 gi|308365619|gb|EFP54470.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
          Length = 250

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 108/229 (47%), Gaps = 11/229 (4%)

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             V +      +            QQ T I   G        LPG + V N LVA  +  
Sbjct: 12  ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILD 71

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L  +      R
Sbjct: 72  TVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVLTTL-AHPDRR 128

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---- 439
           + VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G        
Sbjct: 129 LAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDA 188

Query: 440 --IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
             +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 189 QVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 236


>gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
 gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
          Length = 779

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 140/429 (32%), Gaps = 51/429 (11%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLY 110
           + DG         +GA+AIVVS+A    +       +   P L   +    L    +   
Sbjct: 60  RTDGQR-AENV--RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAALV---NEYD 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G      +AV G+ GK++  S +     R+G     + PT  +     D           
Sbjct: 114 G------IAVAGSHGKTTTTSMIGVTLDRAG-----VSPTVIVGGEVPDLGTNAKLGTSR 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                   S G                    ++      TN+  DH+D++ T +    A 
Sbjct: 163 YLVSEADESDGSFLK----------------LRPHIAVVTNVEDDHMDHYGTMEKIIEA- 205

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            R F   +  +  A++     Y  E+++R      R +           +          
Sbjct: 206 FRTFISQIDADGTAVLC----YENEILRRLGAETDRTVVSYAIDAAADYRAADIETCGSV 261

Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++ +V  +          +PG   V NAL    +    G+D   + + L   H    RF+
Sbjct: 262 ISFTVFERGTALGRISLHIPGRHNVLNALACVAVARLAGLDFDRIADALAHFHGAKRRFQ 321

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G   RG  +  DYAH    +   L   R    GR++ VF                   
Sbjct: 322 TKG-KERGIWVVDDYAHHPTEIAATLAAARQTEPGRLVCVFQPHRYSRTQLLRAEFGGCF 380

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             AD+ ++TD     E P      E +  E+        +    R + ++   E +   D
Sbjct: 381 AAADLLLLTDVYAAGEAPIPGISGETLMEEVARQTGQDAVYLPERADLVQYLAEHVRPGD 440

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 441 LVITMGAGN 449


>gi|124515887|gb|EAY57396.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum rubarum]
          Length = 464

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 94/433 (21%), Positives = 152/433 (35%), Gaps = 49/433 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           G +   GH    Q    GA  A+V+S+A S ++          I VV    + L+     
Sbjct: 51  GARVFVGHR-AEQV---GAVDAVVISTAISQENPELLEARRLGIPVVHRG-EALAGIMRG 105

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
             G      +AV G+ GK++  S +  +    GL    +     +  F  + R+      
Sbjct: 106 FQG------VAVAGSHGKTTTTSMIAHVLAHGGLDPTCV-VGGRVPGFGGNARVGKK--- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                               A S   D   L  I       TN+ ++H+DY+Q+      
Sbjct: 156 ----------------NIFIAESDESDGSFLK-ISPHVAVVTNVDQEHLDYYQSFDQ-LK 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHN 287
           A    F   +P E  A+   DD     ++   +       + G+     +    V A   
Sbjct: 198 AAFERFLTSVPPEGLAVACLDDPELSNILPSLNAPH---WTYGFSPAADVVGSDVSAEGL 254

Query: 288 KQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++ + GKD   F+  +PG   V NAL    +    G+++    E LE+   V  RF
Sbjct: 255 STSFSVRLRGKDIGTFVLNVPGVHNVLNALATIAVAHHFGLEAECAREALERFRGVGRRF 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI 405
             VG    G RI  DY H    + + L   R      R++V F                 
Sbjct: 315 TQVGEEG-GIRIVDDYGHHPTEIGVTLAAARQAYPDRRLVVAFQPHRFSRTRDLLSRFAS 373

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNK 458
           A  LAD+ ++ +     E P       ++  EI           G++ E I   + +L  
Sbjct: 374 AFQLADVLVLGEIYGAGESPIAGITGRRLFDEIRTSFENEAYFAGDQSEMISRLMTILKP 433

Query: 459 QDVLVVAGKGHET 471
            D+L+  G G  T
Sbjct: 434 GDLLITMGAGDVT 446


>gi|169833765|ref|YP_001695051.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996267|gb|ACA36879.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
          Length = 457

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 175/483 (36%), Gaps = 61/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---IHEVAQVVGAKNDISI-FEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A   GA   +     +          N P ++VD+        ++    K   ++ AV
Sbjct: 56  ERAFENGAAVTLSEKKVA----------NHPYILVDDVLTAFQTLSAYYLEKTAVDVFAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +                I+      +    + I L   + ++   
Sbjct: 106 TGSNGKTTTKDMLAHLLS--------------ITYKTYKTQGNYNNEIGLPYTVLHMPEG 151

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V      H  D H L  +        T +G  H+ + + +      KM++ +  + 
Sbjct: 152 TEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG-MD 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  +  AD      +++       +V+  G   +   L+    +  K  +T      +
Sbjct: 211 SGSLLLAPAD-----TIVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFLE 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G++   NA++A+ + +  G+    +    + L +   R E+    + G  I 
Sbjct: 263 QALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEW-KKAANGADIL 321

Query: 360 VD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
            D Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
           I I        ED  ++        P          E  ++ E  ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAG 466
           + G
Sbjct: 437 LKG 439


>gi|255692589|ref|ZP_05416264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621646|gb|EEX44517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 432

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 147/439 (33%), Gaps = 36/439 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    +  + 
Sbjct: 14  QSVTTDSRNCPDGSLFIALKGESFNGNAFAKFALNSGCAYAIID------EGEYAVEGDQ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYILVDNCLQTMQQLANYHRRQLGTKVIGITGTNGKTTTKELISTVLSQAHNVLYTLG-- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P  L   L       +  + + A+  G  +   +  +   G  T
Sbjct: 126 --------NLNNHIGVPTTL---LRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L  K  S   I+ D+ Y   + +         + 
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDFLRKKENSTIFIHHDNPYLMNMSEELDR-----IY 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G Q       ++                +        L GE+   NAL A  +    G+
Sbjct: 230 YGTQDGLYINGRITDNSPYLAFEWKAGNGNEIHRIQTQLIGEYNFPNALAAITIGHFFGV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   + E L        R +   T      I   Y     S+   L+N R +     +++
Sbjct: 290 EMQKIDEALAGYTPQNNRSQLKQTTDN-TLIIDAYNANPTSMMAALQNFRNMAVPHKMLL 348

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            G   +          KI   + D           E    +  +       F    N  E
Sbjct: 349 LGDMRELGAESNIEHQKIVNYIKD--------SNFEQVWLVGEQFAATQHNFKTYANVQE 400

Query: 448 AIRTAIEMLNKQDVLVVAG 466
            I+       K   +++ G
Sbjct: 401 VIKELETQKPKGYTILIKG 419


>gi|289443663|ref|ZP_06433407.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
 gi|289416582|gb|EFD13822.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 247

 Score =  176 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 84/235 (35%), Positives = 111/235 (47%), Gaps = 12/235 (5%)

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVT-ISVEGKDFDFLFPLPGEFQVYNALV 317
           A  A    +S   +        V       QQ T I   G        LPG + V N LV
Sbjct: 3   ARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLV 62

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   +G+     +  L ++  VPGR E +    +G    VDYAH   +L  +L  + 
Sbjct: 63  ALAILDTVGVSPEQAVPGLREIR-VPGRLEQID-RGQGFLALVDYAHKPEALRSVLTTL- 119

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G  
Sbjct: 120 AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAA 179

Query: 438 GF------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                   +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 180 EVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 233


>gi|116670127|ref|YP_831060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
 gi|116610236|gb|ABK02960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
          Length = 491

 Score =  176 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 136/465 (29%), Gaps = 50/465 (10%)

Query: 25  WRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
             +  I    V +DSR    G ++VA  G   DGH FI  A  +GA   +V         
Sbjct: 18  AADPTITPSAVVTDSREATEGSLYVAKPGESADGHDFIGAAFERGAVLALVEREGPDGAG 77

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVASFV 133
           +       P +VV +    +   A+    +             ++ +TG++GK++    +
Sbjct: 78  APY-----PAIVVKDAVLAMGALAAESVRRIRARRAAEGTEFTVIGITGSAGKTTTKDLL 132

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I    G +    G  +                 YL              + + A+  G
Sbjct: 133 AGILSAEGNTVSPQGSYNGEVGVPLTVFQAGFDTRYL-------------VIEMGATGIG 179

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++  D ++   G    +G  H            AK  L E L P    A+I  DD   
Sbjct: 180 HIRYLADMVRPSIGVVLGIGTAHAGEFGGVDNIAVAKGELLEAL-PDSGTAVINLDDG-- 236

Query: 254 KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ------QVTISVEGKD--FDFLF 304
             V          VL    Q    +    + A+H +       +  +   G+        
Sbjct: 237 -RVAAMTSRTTANVLGFSAQPADDVPGAALRAVHVETNPAGNPEFELFFPGEAEGHQVRS 295

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
            L G   V N L AAG   A G+    +   L                  G  I  D Y 
Sbjct: 296 RLIGAHHVTNLLAAAGAAYAAGVTGERIAASLSTQTAASRWRMERTERPDGVTIINDAYN 355

Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALD----LADIAIVTDD 418
               S+   L+ +  +  GR    V G   +           +            +V   
Sbjct: 356 ANPESMRAALRTLADLGRGRRTWAVLGAMLELGDESIREHMAVGTQVVRLNISRLVVVGR 415

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             RS     +          F E  +  EA       L   D+++
Sbjct: 416 EARSLYVSAVNEGSWGDECVFTESAD--EAYDLLQRELEPGDLVL 458


>gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 785

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 141/415 (33%), Gaps = 46/415 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+AIVVS+A    +       +   P L   +    L    +   G      +AV G+
Sbjct: 70  RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAALV---NEYDG------IAVAGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +     R G     + PT  +     D                   S G  
Sbjct: 121 HGKTTTTSMIGVTLDRVG-----VSPTIIVGGEVPDLGTNAKLGTSRYLVSEADESDGSF 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++      TN+  DH+D++ T +    A  R F E +  +  
Sbjct: 176 LK----------------LRPHIAVVTNVEDDHMDHYGTMEKIIAA-FRQFIEQVDTDGT 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-D 301
           A++  ++   + +   A     +V+S             +    +    ++   G +   
Sbjct: 219 AVLCFENEILRNI---ARETAHKVVSYAIDHEADYRASNIETRGSVISFSVHERGTEMGR 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L  +PG   V NAL    +    G++   + + L + H    RF+  G   RG  +  D
Sbjct: 276 VLLNIPGRHNVLNALACIAVARLAGVEFPAICDALAQFHGAKRRFQTKG-KERGVWVVDD 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    + + L   R     R+I VF                     AD+ ++TD    
Sbjct: 335 YAHHPTEIAVTLAAARQTNPERLICVFQPHRYSRTQLLRAEFGKCFADADLLLITDVYAA 394

Query: 422 SEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P      E +  E++       +   +R +  R   + +   D+++  G G+
Sbjct: 395 GETPIPGISGETVMEEVVRQTGQDVVYLPDRADLERYLAQQVRAGDLVITMGAGN 449


>gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
 gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
          Length = 459

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 160/443 (36%), Gaps = 36/443 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA++G   DGH F+ QA AQGA   +VS+              
Sbjct: 23  VSGVAFDSREVGPGDLFVAMLGEATDGHRFLDQAFAQGAAGALVSADTPH---------- 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V ++ + L         +    I+ VTG+ GK+S    +    +R        G 
Sbjct: 73  -PHVKVADSFRALEDLGRASRARTQATIIGVTGSVGKTSAKEALYAALER--------GW 123

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +    +     T  P+ LA+    +         +  +  G        ++      
Sbjct: 124 HGRVHRSVKSYNNHTGVPLSLARMPRDVR---AGVFEMGMNHAGELSALTAMVRPHIAIV 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H ++   + A  +AK  +F+ L P    AII  D  +   ++  A     R+++
Sbjct: 181 TAIAPAHTEFFPDESAIADAKGEIFQGLEP-GGTAIIPYDSPHRDRLIAAAKPYAARIVT 239

Query: 270 VGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G+        ++ +   +    VT  +  ++ +F    PG+  V NAL       A G 
Sbjct: 240 FGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVSNALAVLAAVDAAGG 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D  L    L +L  + GR       + G  I  + Y     S+   L  +       + V
Sbjct: 300 DLGLAGLALAELGGLAGRGARF-RAANGALIIDESYNANPASMRATLAVLAEEPGRHVAV 358

Query: 387 VFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +      G D       +   I     +  ++       E    + A +  G   F+   
Sbjct: 359 LGEMRELGDDSADYHAGLAEPILAAHVEKVLL-----VGESMAPLAAAL-EGRVDFVHVT 412

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +   A      ++   DV+++ G
Sbjct: 413 DAKAAQAALASIIAPNDVVLIKG 435


>gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 468

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 148/437 (33%), Gaps = 43/437 (9%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            D R    G +FVA  G   DGH + PQA   GA A++ S   +L           P +V
Sbjct: 26  IDGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGAVAVLGSRPTTL-----------PTVV 74

Query: 95  VDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           VD+ +  L   A+ +    +    ++A+TG+ GK+S    ++ +   +  +    G  + 
Sbjct: 75  VDDAQAALQRLAAHVVALLRDGLTVVAITGSQGKTSTKDMIEAVLSSAAPTVATSGSFNN 134

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                        +  +L      +   G  H+   A   GL       +       TN+
Sbjct: 135 ELGVPLTMLRADATTRFL------VLEMGARHIGDIAELTGL-------VAPDIAVVTNV 181

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H+    +++A   AK  L   L      A+++ADD     V+  +      VL+ G 
Sbjct: 182 GQAHLGEFGSREAIAVAKSELVRGL-AGGGTAVLHADDP---RVLAMSDLTDGPVLTFGA 237

Query: 273 QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +     +  A+    +    +  +        P  G     NA  AA   +A G+   
Sbjct: 238 GERAGVRVRDLALDRLGRPSFALRHDDATAVVTLPFVGAHWALNAAAAAAAGLAAGVGLG 297

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
                L    +   R E    +     +   Y     S    L  +  I + R I V G 
Sbjct: 298 QAATALNTASISKWRMELRALSGGATLLNDSYNANPESTRAGLDALAAIEARRRIAVLGE 357

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               G+  +     +G  A   AD+ +        E    I           +   +   
Sbjct: 358 MLELGETSRDAHHEIGTYAATRADLVLT-----VGEAAAVIAD---GAGAKAVALPDNAA 409

Query: 448 AIRTAIEMLNKQDVLVV 464
           AI      L   DV++V
Sbjct: 410 AIDWLRSHLAPGDVVLV 426


>gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
 gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
          Length = 434

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 153/448 (34%), Gaps = 47/448 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER +  V++DSR      +FV IVG + DGH +I  A+ +GA            D     
Sbjct: 20  ERLVERVATDSRDANEAGLFVPIVGARVDGHDYIEAAVEKGAIVTFWEEGRPQPD----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N  ++ V +T + L   A+R   +    ++A+TG++GK+S    V  + +       +
Sbjct: 75  --NLVVIPVKSTVEALQTAAARYLEEINPLVVAITGSNGKTSTKDMVAVVLEE------K 126

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                T  +F  D              L       V  + +  +  G  +      K   
Sbjct: 127 FKTHKTAGNFNSDVG-------LPLTVLRMPRDTEVAVLEMGMNGFGQIETLSKLAKPDV 179

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  H +    +     AK+ +   L   +   I+ AD+               +
Sbjct: 180 AFVTNIGESHGEQVGGRTGIAKAKLEIKAGL-KADGRLIVDADEPLL----------SGQ 228

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              VGY        +V        +     G  ++    + G  Q+ NA  A    +A G
Sbjct: 229 GYRVGYDETADGKIEVIETTFDASI-FKYNGDLYE--LKVLGAHQIRNAAYAIACGLAFG 285

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D A++   L+++ +   R E          I   Y  +  S+   ++ I+++      V
Sbjct: 286 LDHAMIQRGLDRIKLTSMRMEKQ-MFGEAHLINDAYNASPTSMIAAIETIKSLEGFSKRV 344

Query: 387 VFGCGGDR----DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           +           +Q +   +G          I+  D  +      I   I          
Sbjct: 345 LVLGDMYELGADEQMQHEQVGGAVTSPVTDCILVGDKAKW-----IADGIQDSRVNVKMV 399

Query: 443 GNRIEAIRTAIEMLNKQDVLVV--AGKG 468
               EA +  +    + D +V+  A +G
Sbjct: 400 PTVEEA-KALLHHYQRPDTVVLLKASRG 426


>gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 477

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 136/386 (35%), Gaps = 30/386 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85
           +   +S DSR I+   +F+AI G   DGH FI  A+ QGA  I+     +  +    +  
Sbjct: 42  EFERISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGIISELSLAEVANTLGNIV 101

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             ++   + V NT   +   A     +  E ++ +TG+ GK++    ++ + +       
Sbjct: 102 FGTDFSFIKVPNTILAMHDIARGFRQRI-EKVIGITGSVGKTTTKEILKTLLK------- 153

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                ST  +F                      +       +   S G            
Sbjct: 154 GYQTVSTFGNF-------NNEIGLPLSLFRAKKNDKFGIFEMAMRSKGEISQLCSIAMPD 206

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK----EVMKRAH 261
            G  T +   HI    + +    AK  +    L     A +  +  YS+    E++K   
Sbjct: 207 IGIITRIAESHIGLLGSMENIARAKGEI----LDFVDSAFLNFNCKYSRKIFGEMLKDKK 262

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V+  G +    ++K      +  ++ +S    +F    P     Q    L +  +
Sbjct: 263 GKPKEVIWFGKESDL-YIKSHEIFIHGSRLELSGRFGNFVLRAPNIFLPQFEPLLASVAV 321

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+D   + ++L+  H + GRF  +        I   Y  T  S    L+ I+++  
Sbjct: 322 ARFLGLDWNEINDNLQGYHPLQGRF-LIKKLGDQIVIDDSYNATCTSFLKGLETIKSLKF 380

Query: 382 GR--IIVVFGCGGDRDQGKRPIMGKI 405
           G    I VFG   +     R +  K+
Sbjct: 381 GNRRKIFVFGDILEAGDKSRDLHKKV 406


>gi|86134152|ref|ZP_01052734.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
 gi|85821015|gb|EAQ42162.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
          Length = 418

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 130/380 (34%), Gaps = 51/380 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R+I+   IF A+ G+  +G+ F  +A+  GA   +V             ++   I
Sbjct: 16  VNTDTRNIRKNTIFFALKGDNFNGNSFAEEALKLGANYAIVDEEV--------YQTQDAI 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGLSSF 145
           ++V N  + L   A+    +    I+ +TG++GK++    +  +           G  + 
Sbjct: 68  ILVPNVLETLQQLANYHRKQLKATIIGLTGSNGKTTTKELIFAVLSKKYKTIATKGNLNN 127

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG   T+ S   D  +                        + A+     +      +  
Sbjct: 128 HIGVPLTLLSMPIDTEMGIVE--------------------MGANHQKEIEFLSSICEPD 167

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN G+ H++     +     K  L+  L      A I  DD      ++       
Sbjct: 168 FGYITNFGKAHLEGFGGVEGVIKGKSELYHFLEQNNKIAFINPDDK-----IQVDKTKNI 222

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +          L  +        V +S +  +      L G +   N  +A  +    
Sbjct: 223 TTIPF--------LPSIALKEANPFVQLSYD--NLVINSNLIGTYNYTNIAIAITIGNYF 272

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +   ++ E +E       R + +  NS    I   Y    +S+++ L+N   + +   I
Sbjct: 273 KVKDDVIKEAIEGYESTNNRSQIINQNSN-VIILDAYNANPSSMKVALENFHALKADHKI 331

Query: 386 VVFGCGGDRDQGKRPIMGKI 405
           V+ G   +    +     +I
Sbjct: 332 VILGDMFELGDARLEEHQQI 351


>gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
 gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
          Length = 422

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 154/443 (34%), Gaps = 47/443 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +FVAI G K DGH +  +AI +GA  +V      LQ           ++ V
Sbjct: 10  DSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEKK--LQHIPEEK-----LITV 62

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++T +FL   A     KH   ++ +TG++GK++    + Q+  +                
Sbjct: 63  NDTIEFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGK--------------DR 108

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
             ++              L+  +++    + +  +  G                 N+G  
Sbjct: 109 AFRNPGNLNTEIGLPLSILNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAILLNVGTA 168

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H      Q+     K++L E +    +  ++Y      K+++ R   +   +++ GY+  
Sbjct: 169 HRGIAGNQEMILRGKLQLIENMQKNGTAIVLYD-----KKLLDRI--SLKPMVTFGYKKG 221

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              L   C I    +       +   F    +    Q+ N          +GID      
Sbjct: 222 DYQLVDYCYIDFSTKAFYKTPREQLIFNLKSIWNAGQLTNISAVLAALDILGID--CNKN 279

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            LE    V GRF     N  G  +  D Y  +  S E  ++ I+ +      VV      
Sbjct: 280 ILENFTPVAGRFR--VMNCNGIYVVDDTYNASIESFETAVETIKKLGKRSFAVVGSIKEQ 337

Query: 394 RDQG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
                     +G+I   L  + +   DN       +I  EI++         +  E    
Sbjct: 338 GKYSIETHRKLGEILEKLDGVVVYNVDN-------EI--EIMNCSKKIFASNSATEISDF 388

Query: 452 AIEMLNKQDVLVVAGKGHETVHI 474
              +L   DV++   K   +V I
Sbjct: 389 LKRILIPGDVVLF--KASRSVQI 409


>gi|309812705|ref|ZP_07706449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
 gi|308433400|gb|EFP57288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
          Length = 470

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 159/460 (34%), Gaps = 37/460 (8%)

Query: 13  ELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           E I  ++   +   + +I   V +DSR   AG ++VA VG   DGH F+P          
Sbjct: 7   EEIATVTGGRLVGPDARITGPVVTDSRECAAGSLYVARVGEHADGHDFVPA--------- 57

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVA 130
              +  +              +VVD+     +  A  +  + P   I+ +TG+SGK+S  
Sbjct: 58  -ALAVGAAGVLGERAVDGASCVVVDDVELAFAEVARAVVDRAPNLQIVGITGSSGKTSTK 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +  R   +    G  ++             +  YL                + AS
Sbjct: 117 DLLGAVLARFAPTIAPYGSLNSEVGVPLTVCRIDEATRYLVAE-------------MGAS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G   +         G   N+G+ H+    + +A    K  L E L P++  AI+  DD
Sbjct: 164 GVGHIAYLTKIAPPSIGIVLNVGQAHMGEFGSVEAIARTKGELVEAL-PQDGVAILNVDD 222

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +  + +  R   A   ++ +G    +           + +  ++    + D    L GE 
Sbjct: 223 SRVRAMASRTQ-AKVILVGLGEDADYRATDVSIDEAGRPRYHLTCPLGEADVRLALVGEH 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
           QV N+L       ++G+    V+E +            V     G  +  D Y    +S+
Sbjct: 282 QVGNSLSVIAAATSLGLALGDVVEAVAGAGAASRWRMEVSEVGGGVTLVNDAYNANPDSM 341

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVTDDNPRSED 424
              L+ +  + TS R I   G   +  +        +    A    D  +V     ++  
Sbjct: 342 RAALRALAHMGTSRRSIAALGEMRELGEASHDEHTAVGQLAAELGIDRLVVVGAGAQAIA 401

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLV 463
                A +       +   + I+A     +E +   DV++
Sbjct: 402 QGARTAGMTA---DAVTTVDDIDAAHDVLVEQIAPGDVVL 438


>gi|220925312|ref|YP_002500614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
 gi|219949919|gb|ACL60311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
          Length = 494

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 166/451 (36%), Gaps = 32/451 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + +  +S D+R ++ G +F AI G   DGH F+  A+A+GA A VVS A + +   +   
Sbjct: 34  QPVAGLSIDTRTLKVGDLFFAIRGETRDGHDFVRDALARGAGAAVVSQARAAELAGSGPL 93

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P    D     +   A+    +    +LAVTG+ GK+     ++ +    G +   +
Sbjct: 94  VVVPEAGDDPVLAAMRALAAAARARSAARVLAVTGSVGKTGTKEALRHVLAAQGTTHASV 153

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIA 206
                          +  +   +   L  + +     V     +H G        ++   
Sbjct: 154 --------------ASYNNHWGVPLTLGRMPAGSAFGVFEIGMNHAGEIAPLARLVRPEI 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC- 265
              T +   HI++ ++     +AK  +F  L P    AI+  D+ + + +   A  +   
Sbjct: 200 AIVTTVEPVHIEHFRSLSGIADAKGEIFCGLEP-GGIAILNRDNPHFERLSAHALASRAG 258

Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           R++S G +    +  +++    +   V  SV G    +    PG     N+L       A
Sbjct: 259 RIVSFGEHPQADVRAERIVMRPDLSIVDASVLGVPVTYQLGTPGRHTALNSLAVMAAVHA 318

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHTSNSLEMILKNIRTI-- 379
           +G D AL    L +LH   GR E        G  + VD  Y     S+   L  +  I  
Sbjct: 319 LGADLALAALSLAQLHPPVGRGERTLLRLREGEALLVDESYNANPASVRAALATLAGIEI 378

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              GR I V G   +       +  ++A  +    I   D   +  P    AE+   +P 
Sbjct: 379 RGQGRRIAVLGDMLELGSEAPRLHRELAASVEQHGI---DLVFAAGPM--MAELFESLPA 433

Query: 439 FIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
                      E +   +  +   D +++ G
Sbjct: 434 GTRGVAAPTSAELLDAVLSEIRPGDAVMIKG 464


>gi|42524578|ref|NP_969958.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus
           HD100]
 gi|48428296|sp|P61676|MURC_BDEBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39576787|emb|CAE80951.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus
           HD100]
          Length = 453

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 150/412 (36%), Gaps = 45/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +   +      I ++    + L+       G      +AV GT GK+
Sbjct: 65  ADVVVYSSAIQYGNPEISEARARQIPLIPRA-EALAEIMRLKRG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    I   +      + PT  I    +  + T               S G  H   
Sbjct: 118 TTTSMTSAIFLEA-----NLSPTIVIGGRFELIKSTAMLGSGEWLVAEADESDGSFHK-- 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  DH+++ +T +    +    F   +P     I+ 
Sbjct: 171 --------------LSPEIAIITNIDSDHLEHFKTFENVQKS-FHDFALKVPFYGKVIVC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLF 304
            DD   +++ +   N   R+L  G+  K   +      H   ++    +  +    +F  
Sbjct: 216 GDDPLVRQIFE---NFPKRILFYGFDEKNDLVVTGEHGHYAVHRNDRLLGTKHLVGEFDL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG     NA+ A    +A GI  A   + L++   V  RF F G   +G ++Y DY H
Sbjct: 273 KVPGRHNALNAVAAICAGVAAGIPFATCAKGLQRYEGVDRRFHFKGEK-KGIKVYDDYGH 331

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM-GKIALDLADIAIVTDDNPRSE 423
               +  +L+  R     + +VVF       + +        A   AD  ++TD  P  E
Sbjct: 332 HPTEVRAVLQAFREKYPKQRLVVFFQPHRYSRTQHCWHDFTTAFMEADQVLLTDIYPAGE 391

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P      EK+ +E+ H    +  + +  +A +  + ML + DV V  G G 
Sbjct: 392 APIPGVTSEKLASEMKHEHAQYFVRDD--KATQKILGMLKEGDVFVTLGAGD 441


>gi|322421361|ref|YP_004200584.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18]
 gi|320127748|gb|ADW15308.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18]
          Length = 461

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 89/425 (20%), Positives = 145/425 (34%), Gaps = 43/425 (10%)

Query: 56  GHLFIPQAIAQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           G +FI  A    A+A +VV S+   +D    + ++  ++ V    + L+      YG   
Sbjct: 51  GEIFIGHAAENVAQADVVVISSAVHEDNPEVVEAHLRLIPVIPRAEMLAELMRMKYG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S V  +  + G     I PT  I                L    
Sbjct: 108 ---VAVAGTHGKTTTTSMVATLLAKGG-----IDPTMVIGGR-------------LNSLG 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S         +  EA         L          TN+  DH+D++   +   +  +  F
Sbjct: 147 SNARLGQGQFLVAEADESDGSFLLLS---PTIAVVTNIDADHLDFYSGIEEIKDTFVE-F 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293
              +P    A++  D+    +++ R      R  S G           V           
Sbjct: 203 INKVPFYGLAVLCLDNGNIADILPRVKK---RFTSYGLSAQADFRATDVRLSGFSTSFVA 259

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G    +  F +PG   V NAL A  + + + I    + E  +    V  RF   G  
Sbjct: 260 HHKGVKLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFKAFGGVGRRFSLKG-E 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             G  +  DY H    +   L   +      R++VVF         +       A   AD
Sbjct: 319 VNGIMVVDDYGHHPTEIRATLAAAKAGFAENRLVVVFQPHRYSRTKELFEDFVKAFHDAD 378

Query: 412 IAIVTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + I+TD     E P E + AE++      HG         R +       +L   D+L+ 
Sbjct: 379 VLILTDIYAAGEAPIEGVTAEMLAARVRRHGQKDVTWLPERDKLCEHLERVLAPGDLLLT 438

Query: 465 AGKGH 469
            G G+
Sbjct: 439 LGAGN 443


>gi|183983187|ref|YP_001851478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
 gi|183176513|gb|ACC41623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
          Length = 525

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/515 (18%), Positives = 160/515 (31%), Gaps = 73/515 (14%)

Query: 3   LQDLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + D    +  E++    + I P +  +R++   V  DSR +  G +F+A+ G + DGH  
Sbjct: 1   MIDYTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDH 60

Query: 60  IPQAIAQ-----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
              A+A            G  AIVVS      D +A   +       D +   +    ++
Sbjct: 61  AASAVAAGAVAVLAARPVGVPAIVVSPE---PDVTADALTGVLEHDADGSGAAVLAALAK 117

Query: 109 LYGKHPENILA-------VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L       ++A       +TG+SGK+S    V  + +  G      G  +          
Sbjct: 118 LAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVL 177

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
             T    YL   +S             A   G             G   N+G  H+    
Sbjct: 178 RATRGTDYLILEMS-------------ARHPGNIAALARVAPPAIGVVLNVGTAHLGEFG 224

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +++     K  L  + +P     I+ ADD     + +       RV      G       
Sbjct: 225 SREIIAQTKSEL-PQAVPASGVVILNADDPAVAAMAEVTAARVVRVGRATATGAGWAGPG 283

Query: 282 VCAIHN-------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                        + Q T+            + G+ QV NAL A  + +  G   + V  
Sbjct: 284 DVWAGPVSLDRLARPQFTMHAGDAAAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAA 343

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG----------- 382
            L +   V      V T   G  +  D Y    +S+   L+ +  I  G           
Sbjct: 344 ALAEAGPVSRHRMQVSTRPDGVTVIDDAYNANPDSMRAGLQALAWIARGEAESTAASQPG 403

Query: 383 ------RIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAE 431
                 R   V G   +           I      LD++ + +V      S         
Sbjct: 404 VRPQSRRSWAVLGEMAELGADAITEHDHIGRLAVRLDVSRLVVVGTGRSMS---AMYHGA 460

Query: 432 IIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ G      +   +R  A+      +   DV+++
Sbjct: 461 VMEGSWGTEAVSVPDRDAALALLRAEIQPGDVVLI 495


>gi|103487369|ref|YP_616930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977446|gb|ABF53597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 459

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 159/450 (35%), Gaps = 32/450 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +  ++ V+ DSR +  G +F+A+ G   DGH FI +AIA GA  IV  +A      
Sbjct: 18  IASADFTVSGVAFDSREVTRGDLFIAMKGENADGHSFIDKAIAAGAAGIVCETAI----- 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P + V ++   L+   +    +    I+ VTG++GK+     +     R   
Sbjct: 73  ------DHPHVRVADSAAALNALGTASRARSHGRIIGVTGSAGKTGTKEALFAALDRF-- 124

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDG 201
                         A  +  +  + + +  +L+ + S+       +  +  G        
Sbjct: 125 ----------RPGKAHRSVKSYNNHVGVPLSLARMPSTADFGIFEMGMNHAGELAALTRI 174

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T +   H+++  +++A  +AK  +FE L P    AII  D  +   +  +A 
Sbjct: 175 VRPHVAIVTTIAPAHMEFFGSEEAIADAKGEIFEGLEP-GGTAIIPFDSPHYARLRAKAE 233

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                ++S G  +G  +              VT  V+     F     G   V N+L   
Sbjct: 234 QHAAHIVSFGLAEGADVRAVDWLPDGKGGSLVTAQVQDALLCFTIAQAGAHWVANSLAVL 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNI 376
               A+G D         ++  + GR         GG I V    Y     S+   +  +
Sbjct: 294 AAVKAVGGDLPAAGLAFAEMPGLTGRGARHRIAVPGGHILVIDESYNANPASMAATIGQL 353

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
              ++ R + + G   +   G       +A  L    +        E+   +   +   I
Sbjct: 354 AGESADRKVAILGAMKELGPGGEAYHAGLAAPLVAAGVQFAL-LVGEEMAPLAKALEGRI 412

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             F       +A      ++   D ++V G
Sbjct: 413 -DFAHVPAHPDATARLGGLIRPGDAVLVKG 441


>gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
          Length = 456

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 137/407 (33%), Gaps = 31/407 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I      P       +  V +DSR  Q G +FVA+ G   D H F+
Sbjct: 5   MKTLDL------NFICATLNLPQPAENHPVCRVITDSRQAQEGDLFVALAGENHDAHDFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  +A+GA AIV  S  +                V +T   L   A+         +  +
Sbjct: 59  PDVLAKGARAIVSRSDLAGVAG---------CFFVPDTLHALQQMAAAWRKAVNPFVFGI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  + +            +T  +F                 L+     
Sbjct: 110 TGSSGKTTVKEMLAAVLRA---KFGADAVLATAGNFNNHIG-------LPLTLLNLRGHH 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLP 239
               + +  +  G                 N  R HI            AK  +++ L P
Sbjct: 160 RYAVIEMGMNHFGELAALTRIAAPDTALVNNAMRAHIGCGFNGVADIARAKSEIYQGL-P 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   A++ A+DA     + +A   G + L+ G +   IH + +          +    + 
Sbjct: 219 ENGVALLPAEDANLP--VFQAACNGLKTLTFGAEQGDIHAENIDLQPLSSTFDLVYGTER 276

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P  G   V NA  AA L +  G+  A +   L     + GR +      R   I 
Sbjct: 277 VRVSLPAAGRHNVANACAAAALAVQAGVSLAEIAIGLAAFGNIKGRLQ-QKRGIRNALIL 335

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            D Y    +S++  L  +    + R+ V+   G   +     +  +I
Sbjct: 336 DDTYNANPDSMKAALDVLAKQPAPRVFVMGDMGELGEAEAPKMHEEI 382


>gi|87199151|ref|YP_496408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134832|gb|ABD25574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 489

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/399 (22%), Positives = 147/399 (36%), Gaps = 36/399 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR +  G +F A+ G   DGH ++  A  +GA   VV  A             
Sbjct: 42  VSGVEIDSREVVEGDLFFALKGENSDGHRYLEGAFGRGAAGAVVEHACFG---------- 91

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V NT   L         +    I+ VTG++GK+ V   +     R+         
Sbjct: 92  -PHVLVSNTSTALEDLGKAARNRVDAGIIGVTGSAGKTGVKEALYAALDRASRGRAH--- 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             ++ S+     +        A+    +   G+ H        G        ++      
Sbjct: 148 -RSVKSYNNHVGVPLSLARMPARTSFGVFEMGMNHA-------GELAALTRLVRPHVAIV 199

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   HI +   ++A  +AK  +FE L P    AII AD+ + + +  +A     RV+S
Sbjct: 200 TTIAPAHIGHFAGEEAIADAKAEIFEGLEP-GGVAIIPADNRHFEHLRAKATLHAERVIS 258

Query: 270 VGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G         L  V A      VT  + G+   +    PGE  V N+L       AIG 
Sbjct: 259 FGVAKDATVRLLDAVPAPGGGTLVTADLGGRKVCYTIAQPGEHWVANSLAVMAAVEAIGG 318

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGG-----RIYVD--YAHTSNSLEMILKNIRTIT 380
           D       L ++  + GR       + GG      + +D  Y     S+ + L+ +    
Sbjct: 319 DLGAAGLALAEMEGLAGRGARHAIPAHGGDGSGSALLIDESYNANPASMAVTLRQLGQTP 378

Query: 381 SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
           + R + + G     G D  +    + G +A    D  I+
Sbjct: 379 AARRVAILGAMRELGADEARYHAELAGPVAEGKVDRLIL 417


>gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
 gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
          Length = 458

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 169/480 (35%), Gaps = 40/480 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L  +   E      ++P +      + +++D+R I  G +F+A+ G   DGH ++  A 
Sbjct: 2   ELSLQALAERFGGEIVYPGEAYNITFSSINTDTRAINHGDVFIALKGPNFDGHNYLDVAT 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A +V +             + P   V ++ K L         K    ++ VTG+ 
Sbjct: 62  RKGAAAAIVETP--------NTNLDLPQWCVGDSYKALGELGLASREKFNGKVIGVTGSC 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  IC  +G +    G          +       P+ L +     +      
Sbjct: 114 GKTTVKGMLAAICSLAGSTVATRG----------NLNNHIGVPLSLMRL---ANEHQFAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +    S     ++  + I+       N+   H++   + +A    K  L+  L+ +    
Sbjct: 161 IEAGTSGPNEIKYLAELIQPHVAIVNNIMPVHVEGFGSVEAIAIDKAHLYRGLV-EGGVG 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD 301
           ++    A    ++           +  +  +   + ++ +      + + +  +EG++ +
Sbjct: 220 VLNVASAQQPTLLDALQGKKITRFNPELTDEAAEVRVQNIEQDTFGRAEFSAIIEGEEVE 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G   V NAL AA    A+GI   L+   LEK     GR +    N +   I   
Sbjct: 280 LKLGVLGAHNVANALAAASAARAVGISVELIKRGLEKYTGDKGRMQLARVNEKLTVIDDT 339

Query: 362 YAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           Y  +  S++  +          I++  +   G  R+     I              T + 
Sbjct: 340 YNASPGSVKAAIDYAAQFERSAIVLGDMGELGEMRNSAHEEIGRYAQQKQIKQLWCTGEA 399

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV---HIVT 476
            R             G     +     E ++ A+ ML   +V+V+  KG  +     IV 
Sbjct: 400 SRF---------TAQGYGPHAKWFEDKEQLKQALPMLCSSEVVVLV-KGSRSTRMEQIVN 449


>gi|121535917|ref|ZP_01667713.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
 gi|121305488|gb|EAX46434.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
          Length = 460

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 143/426 (33%), Gaps = 48/426 (11%)

Query: 67  GAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA+  +   + +++D  A      I  + P +     +         + A+ +  +    
Sbjct: 50  GAKVFIGHRSENIRDVEAIVVSSAIPESNPEIRAAREQGLKIFHRADIVAALMAER---E 106

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKAL 174
            +A+ G  GK++  S +  + +++GL    +  G    I   A+  +             
Sbjct: 107 GIAIAGAHGKTTTTSMIALVLEKAGLDPTVLIGGELEYIGGNAKYGKGRYLVAEADESDG 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S+L                        +       TN+  DH+D+++T +          
Sbjct: 167 SFLK-----------------------LTPRLAVVTNIENDHMDFYETMENILFTFKEFL 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            ++ PK+  A++  D++Y + +            ++ +  +F                  
Sbjct: 204 YKIHPKDGLAVLCFDNSYIRNIAASLDRPYI-SYAINHDAEFTARNIRVHGPAIIYDAYR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG   V N+L A  + + +G+  + V + L        RF+  G    
Sbjct: 263 HNELLGTIRLNVPGRHNVANSLAALAVGLHVGLTFSQVADGLASFLGAKRRFQTKG-RVN 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +  DYAH    +   L   R +   R+I VF                 A + ADI +
Sbjct: 322 GIWVVDDYAHHPTEITTTLLAAREMRPKRLICVFQPHRYSRTKFLRSEFGRAFEPADILV 381

Query: 415 VTDDNPRSEDP------EKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +TD  P  E P      E I+ E+       +    +R    R   E+    D+++  G 
Sbjct: 382 LTDIYPAGEKPIPGITGEVIKEEVERQTNRLVTYIPDRNNIARYLAEIAEPGDLIITMGA 441

Query: 468 GHETVH 473
           G+    
Sbjct: 442 GN-IYQ 446


>gi|85858527|ref|YP_460729.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
 gi|109892747|sp|Q2LR47|MURC_SYNAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85721618|gb|ABC76561.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
          Length = 480

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 143/418 (34%), Gaps = 58/418 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            + +V S+A    +          + V+        L   ++        +AV+G+ GK+
Sbjct: 82  VDVVVTSTAVRKDNPEVLEAHRRSVPVIPRAEMLAELLKMKVS-------IAVSGSHGKT 134

Query: 128 SVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +  S +  +    GL    +  G   +I S                       +  + H 
Sbjct: 135 TTTSMIATVMASGGLDPTMVIGGKLGSIGS-----------------------NARMGHG 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +           +       TN+ R+H+D+++  +   +A ++ F  ++P    A+
Sbjct: 172 EFIVAEADESDGSFLKLSPSLAVITNIDREHLDFYRGIEDIKDAFLQ-FANIVPFYGSAV 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           +  DD + K ++        + ++ G +       +++       +  +    +      
Sbjct: 231 LCLDDPHIKTILSDIKR---KTITYGMEPAADYRAQELRFNGAVTEYELYYRTECLGSVT 287

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG F VYN+L    +   + +    + + L+    V  R E V     G  +  DY 
Sbjct: 288 LSVPGMFNVYNSLATVAVARELDMTFPDIQQGLKSYVGVGRRLE-VKGKIAGVTVVDDYG 346

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +   L   R +   R+IVVF                 A   AD+ IVTD  P SE
Sbjct: 347 HHPTEISATLAAARQVWKNRMIVVFQPHRYTRTQALFREFLGAFTEADLLIVTDIYPASE 406

Query: 424 DP------EKIRAEI-------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           DP      E +   I       +  IP F +  +        + ++   D ++  G G
Sbjct: 407 DPIEGVTAEALCDGIRSLTRREVRYIPNFSDITD------YLMTVVQPGDTVITQGAG 458


>gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 474

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 157/480 (32%), Gaps = 52/480 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   +I   V  DSR ++AG +F A  G   DGH +   
Sbjct: 1   MIALSLAEIAEIVGGQAHDIPDPAARITGPVVIDSREVRAGSLFAAFAGEHVDGHDYAE- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       A      P LVVD+ +  L   A  +  +   +++A+TG
Sbjct: 60  ----------RAVAAGAVAVLAARPVGVPALVVDDVQTALGALARAVVERLGTDVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+  R   + +  G  +            +    +L            
Sbjct: 110 SAGKTSTKDLIAQVLDRHAPTVWTPGSLNNEIGLPLTALRASDETRHL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPK 240
             + + A   G  ++         G   N+G  HI     ++    AK  L E L     
Sbjct: 158 -VLEMGARGIGHIRYLTGLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPAAED 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ-QVTISVEGK 298
              A++ ADD   + +  R      RV   G      +  + V    N Q    +     
Sbjct: 217 GGVAVLNADDPLVRAMASRTK---ARVTLFGEADEAAVRAENVRLTENGQPSFRLHTPTG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L GE  V NAL AA +   +G+    +   L +   +      V     G  I
Sbjct: 274 CSDVTLRLYGEHHVSNALAAAAVAHELGMPVEEIATALSEAGTLSRWRMEVTERPDGVTI 333

Query: 359 YVD-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCGG---DRDQGKRPIMGKIA-- 406
             D Y     S+   L+ +  +         R   V G      D    +   +G++A  
Sbjct: 334 VNDAYNANPESMRAALRALAAMGRAAQARGARTWAVLGKMAELGDASLVEHDAVGRLAVR 393

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+++ +  V D     E           G      +   +   A+      L   DV++V
Sbjct: 394 LNVSKLVAVGD----REASWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 449


>gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 164/453 (36%), Gaps = 54/453 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNT 90
            VS+D+R+I    I+ A+ G   +G+ F  +A+A+GA  A++   AY + D +       
Sbjct: 14  GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+VD+    L   A+    K    ++ +TG++GK++    ++ +  +           
Sbjct: 67  --LLVDDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQ---------- 114

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             I +   +       P+ L   L+      +  V + A+  G         +   G  T
Sbjct: 115 LNIVATQGNLNNNIGVPLTL---LTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYIT 171

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           ++G+ H++   + +     K  L++ L       I  AD+  ++ +++  +N     +  
Sbjct: 172 SIGKAHLEGFGSFEGVIKTKGELYDYLKTHHKTIIANADNPITEALLENYNNVYSFGVGE 231

Query: 271 GYQGKFIHLKK--VCAIHNKQQVTISVEGKDFDF----------LFPLPGEFQVYNALVA 318
           G       L    V        +  + EG   +              L G +   N   +
Sbjct: 232 GVNVSAQCLSTQPVKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAAS 291

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN--- 375
                   + +  + + +E       R + +   S    +   Y    +S+   + N   
Sbjct: 292 VAFGRYFKLSTKAIQKGIESYIPQNNRSQLLQWGSN-TVLLDAYNANPSSMTAAIDNLLS 350

Query: 376 IRTITSGRIIV--VFGCGGDRDQGKRPIMGKIAL-DLADIAIVT-------DDNPRSEDP 425
           + +  +  +I+  +F  G    Q  + I+ K+     A + ++           P+ E  
Sbjct: 351 MNSFPNKVLILGDMFELGDYATQEHQSIVDKLKEHQWAGVYLIGKNFKQTKAPYPQYETF 410

Query: 426 EKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454
           E+   E+   +       + KG+R  A+   I 
Sbjct: 411 EE-FREVFKKLSFQDSLILIKGSRGMALERLIA 442


>gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
 gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
          Length = 256

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 24/257 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  K+     +        + E++I  V+ DSR    G++FV + G + DGH FIPQ
Sbjct: 1   MKNMTLKNITAACHGTFHGDSSFLEKEITGVAIDSRKAAPGFLFVPLKGARVDGHTFIPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            + QGA A +     S            P + V++  K L   A+    +    ++ +TG
Sbjct: 61  VMEQGALATLTEEDPS--------SLTCPCIHVESCEKALRDIAAFYRMQLDIKVVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +  R      +     T  +F         + I L   +  L+ +  
Sbjct: 113 SVGKTSTKETIASVLSR------KYNVLKTEGNF--------NNGIGLPLTIFNLTEEHE 158

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V      H  + H L  I +      TN+G  H++   ++     AK  +F+ L P  
Sbjct: 159 VAVLEMGIDHFGEMHELASISQPDICVITNIGLAHMENLGSRDGILKAKTEVFDHLRPNA 218

Query: 242 SPAIIYADDAYSKEVMK 258
           S   +  DD     V +
Sbjct: 219 SVI-LNGDDDKLSTVAE 234


>gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 458

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 151/439 (34%), Gaps = 42/439 (9%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           + DSR +  G +FVAI G   DGH +   A+  GA A++ +   +            P +
Sbjct: 28  TIDSRDVPPGGLFVAIPGEHVDGHAYAEAAVRAGAAAVLCTRPVAA-----------PHV 76

Query: 94  VVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V +    L L A   + +    + + +TG+SGK+S    +  + +    +    G  + 
Sbjct: 77  LVPDATVALGLLARATHDRLDRLSTVGLTGSSGKTSTKDLLAHVLEPLAPTVAPTGSFNN 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       PS  YL              V + A   G                 N+
Sbjct: 137 ELGVPLTVLRADPSTRYL-------------VVEMGARGRGHIAALCRISPPDVAVVLNV 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H     +      AK  L E L P    A++ ADD     V   A     +VL+ G 
Sbjct: 184 GTAHQGEFGSVDDTAVAKGELVEALGP-GGTAVLNADDP---RVAAMAGRTAGQVLTFGR 239

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    +  +       ++T++       F+ P  G     NA   A + +A+G+D A V
Sbjct: 240 GGDVRLVDLLTDAAGHPRITLAHGPDRETFVLPQIGGHHGSNAAATAAVAVALGVDLATV 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI----TSGRIIVV 387
              L    V             G  +  D Y     S+   L+++  +      GR +VV
Sbjct: 300 AARLATATVRSPHRMARHVRPDGLVVVDDSYNANPESVAAALRSVADLGAPGDGGRTVVV 359

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            G   +          +I     ++ I  V    P +    +    +  G+P      + 
Sbjct: 360 LGEMLELGADSADHHRRIGALARELGIGLVVAVGPGASPVVEGAGALATGVP------DV 413

Query: 446 IEAIRTAIEMLNKQDVLVV 464
             A+    E +   D+++V
Sbjct: 414 AAAVELLHEQVGPGDLVLV 432


>gi|213691785|ref|YP_002322371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523246|gb|ACJ51993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457878|dbj|BAJ68499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 517

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 98/500 (19%), Positives = 182/500 (36%), Gaps = 43/500 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +     ++ D+R +  G + +   G +     ++      G  A V  + YS    
Sbjct: 34  IASTDEPFAGITYDTRKVTPGTL-LCCKG-RFK-AEYLNGIDEAGLAAYVAETEYSA--- 87

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQR 139
                +  P L+V++ RK +SL ++  YG +P+N L V G +G       + F Q +   
Sbjct: 88  ----ATAAPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGTKGKTTTSYFTQALINA 142

Query: 140 -SGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            SG  +                ++ LTTP  +   + +   +  G+ ++ +E SS     
Sbjct: 143 VSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMEYLVMEVSSQAYKV 202

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            R+ G+     +F N+  DHI    H T + Y   K ++           ++ AD  ++ 
Sbjct: 203 DRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIAN----AKSLVLGADSLHAD 258

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKD---FDFLFPLPG 308
            + + A  AG    +               +         +  +   D    D+   + G
Sbjct: 259 LLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASFHIADGDQTLGDYHLSIDG 318

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTS 366
           +F   NA  A  +  A G+        L  +  V    R E            VDYAH  
Sbjct: 319 DFNYLNAAAAIAIAHAAGVSLDDAG-ALHAIESVRIAGRMEQFRDPQSNTLAIVDYAHNY 377

Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            S+  +L  +         RI +V G  G++   +R  + + A +     I T ++  +E
Sbjct: 378 ASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAAENRIANFIFTAEDTDTE 437

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIV 475
               I  E+   I           +R  AI  AI       ++ ++L++ GKG+E     
Sbjct: 438 PFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHADRFNILLIIGKGNERWIKD 497

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D  ++  + GL
Sbjct: 498 HHKHVPFDGDDHVVERMFGL 517


>gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 465

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 144/421 (34%), Gaps = 36/421 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      D    +  ++    ++    IN V +DSR ++ G +F  I G   DGH F 
Sbjct: 1   MKLT---LGDVQHCLTGMAEECREFA--VINAVRTDSRAVEPGDLFFCIEGWNFDGHEFA 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA  +GA A+V S                P+++V +T + L   AS         ++AV
Sbjct: 56  AQAETRGAVAVVASR--------MPEGVTVPVIMVRDTVRALGQLASCWRDLCGSILVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++V   +  +  R            T++   ++       P      L   S Q
Sbjct: 108 TGTAGKTTVKEMLAAVVSR----------KFTVAKNYRNLNNQIGLP---VSMLKADSGQ 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  S  G  +             TN+G  H++          AK  L +  + +
Sbjct: 155 EVWIMELGISVKGDMEELAVIASPDVAVITNVGPGHLEGLGDVAGVARAKSSLLKY-MRQ 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+  D             +     +         +        + +  +       
Sbjct: 214 DGTAIVSKDYPELWAAATELTGSPVGFSTSDESASCHAVFLGADDDGRGRFRLRTPTGQG 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P  G+    N    A    A+G+    ++  ++ +     RF           +  
Sbjct: 274 EFTAPFCGDHYAENVACVAAAANALGLPFDDIVAGVQAVEADCQRFCCRPMGD--ALVID 331

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-----KRPIMGKIALDLADIAI 414
           D Y     S+   ++    +      +V   G  R+ G     +   +G++  D+A  A+
Sbjct: 332 DTYNANPLSMGRSIRTAVAMA-KDRPLVLVLGDMRELGDEAQARHEELGRLIRDVAPRAV 390

Query: 415 V 415
            
Sbjct: 391 F 391


>gi|95930730|ref|ZP_01313463.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133210|gb|EAT14876.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 456

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 135/410 (32%), Gaps = 43/410 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A S  +          + V+    + L+      YG      +AV GT GK+
Sbjct: 65  AQVVVTSTAVSSDNPEVVEAHRLLVPVIPRA-EMLAELMRLKYG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G     I PT+ +                          QG   V  
Sbjct: 118 TTTSMVATLLSHGG-----IDPTAVVGGRLNALGSNAK------------LGQGEFMVVE 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S G        +       TN+  DH+DY+             F   +P    A++ 
Sbjct: 161 ADESDGSFLK----LTPTIAVVTNIDEDHLDYYSGMDEI-RGVFLDFINKIPFYGLAVLC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DDA  + ++ +      R ++ G          ++       + T+    +        
Sbjct: 216 LDDANIQTLLPQVQK---RYVTYGLTPQADFSATEIEHRAGGTEFTVHFRQEKLGRIRLE 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL +  +   + +    + E  E    V  RF+    +     +  DY H 
Sbjct: 273 MPGRHNVLNALASLAVARELDVPMKTICEGFESFAGVQRRFQIKLDDE--VMVVDDYGHH 330

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              ++  L   R     R++V+F                 A   AD+ +V D    SE P
Sbjct: 331 PAEIKATLSAARNGWDRRVVVIFQPHRYSRTQALFDDFVTAFYQADVLLVMDVYAASEAP 390

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                 E +   I       +   N  EA ++  +++L   D+++  G G
Sbjct: 391 IEGVCGEDLAKAIAGHGHRQVTYCNSEEAVVKQVLDVLKPDDIVITLGAG 440


>gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101]
          Length = 456

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 129/382 (33%), Gaps = 26/382 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  + +DSR +Q G +FV +VG + DGH F+ QA A G +A VV    +       +  
Sbjct: 26  PVGPICTDSRQLQGGELFVPLVGERFDGHGFLGQAAALGVQAAVVQRGRA-----GDVPP 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                +VD+T       A     +    ++AVTG++GK++    ++      G      G
Sbjct: 81  GLLHWLVDDTLDAYQQLALLHRRQLVAPVVAVTGSAGKTTTRELIRAALGPLGPVMASSG 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +       P+ L   L   +      V +     G         +     
Sbjct: 141 ----------NENNDIGVPLTL---LKAGTEHRAVVVEMGMRGLGEIDRLSRTAQPDVAV 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  HI    +++A   AK  +  +L P     I   D    + +         RV 
Sbjct: 188 ITNIGTAHIGRLGSREAIATAKCEITSQLKPDGLLVIPAGDPLLEQAIQAVWSGRVQRVA 247

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G  G       +    ++    +SV G+      PL G     N L+A  +   +G+ 
Sbjct: 248 LAGDPGVDQ--ADLLGELDETNDLLSVRGER--IRLPLAGRHNARNLLLAVAVAQELGVG 303

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                  L  L V             G R+  +  + S    +    +     GR   V 
Sbjct: 304 LP----ALADLDVEVPGGRNRRLQLGGLRVLDETYNASPEAVLAALELLARQPGRRFAVL 359

Query: 389 GCGGDRDQGKRPIMGKIALDLA 410
           G   +  +    +  ++A   A
Sbjct: 360 GSMLELGEQSVALHRQVAERAA 381


>gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
 gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
          Length = 451

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 95/446 (21%), Positives = 169/446 (37%), Gaps = 47/446 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR    G +FVA+   + DGH F+P A A+GA  ++V+                
Sbjct: 26  TGVSIDSRTTAPGELFVALADAR-DGHDFVPDAEAKGAACVLVARDVGA----------G 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L+V++ +  L+        +    ++AVTG+ GKS+    +++I    G +       
Sbjct: 75  PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRILSAFGATHA----- 129

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  + I +   L+ L ++    V     +H G         +   G  
Sbjct: 130 ---------AEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSAITRPHVGVI 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +G  H+    + +A  + K  L   ++P    A +     +   + +RA + G RV+S
Sbjct: 181 TAIGSAHLGLMGSVEAIADEKAELLRGVVP--GGAAVLPRGPFLSRLARRARD-GVRVVS 237

Query: 270 VGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G Q      L +  +  +   VT ++           PG     NA+ A     A+G+D
Sbjct: 238 FGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAALAAAAALGLD 297

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVD--YAHTSNSLEMILKNIRTITSGRII 385
                  L+    + GR      N  G  I  +D  Y  + NS+   L+ +  +   RI 
Sbjct: 298 PVQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVLSLLPGRRIA 357

Query: 386 VVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFI 440
           V+       D    +   +      +AD+      + R    E PE+ R          +
Sbjct: 358 VLGDMLELGDYADDEHRDLADAVSGVADLVFACGPHMRVMFDELPERQRG------AWAV 411

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +   A+R A+ +    DV++V G
Sbjct: 412 DAASLAPAVRAALAV---GDVVLVKG 434


>gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
 gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
          Length = 467

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 94/445 (21%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSR   AG IF A+ G   DGHLF   A+  GA  IV   A  +         +  
Sbjct: 31  AVQTDSRLSTAGSIFFALRGETTDGHLFAHTAVENGATLIVAERALDI---------DVA 81

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            ++V++    L   A  +  +  E     +LAVTG++GK++  + ++ I +R G +    
Sbjct: 82  QIIVNDGVTALQALARAVVARVRENGQLKVLAVTGSNGKTTTKNMLRTILEREGETVAPK 141

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +            T S  YL              V + A   G        +    G
Sbjct: 142 GSFNNDVGAPITMLGVTNSSKYL-------------VVEMGADGIGDITRLQSIVMPDVG 188

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
               +G  HI           AK  +   L P+ +  + Y D      V   A      V
Sbjct: 189 IVLMVGLAHIGKFGDAATTALAKSEMVTALPPQSTAVLNYDD----GRVRAMAPQTEATV 244

Query: 268 LSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              G      +   ++ A        + V  +       + GE  V NAL A     A+G
Sbjct: 245 NFFGLDSHSDVWADEIEASARGTAFDLHVADEVVPVQLRILGEHHVTNALAAITAARALG 304

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI--TSGR 383
           I        LE +         +     G  +  D Y  + +S+   LK +  +     R
Sbjct: 305 IPVQRSAVALESIDRAERWRMELLEAPGGITVINDAYNASPDSMAAALKTLVQVVGPENR 364

Query: 384 IIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            + V       G   ++    I   I        IV     R             G    
Sbjct: 365 SVAVLGEIAELGEYANEEHDRIGRLIVRLNVQKLIVVGHAARHIHNAAGLEGSWDG--ES 422

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   N  EA     E L   DV++V
Sbjct: 423 VLVDNVEEAYAVLREELRGGDVVLV 447


>gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 459

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 150/423 (35%), Gaps = 49/423 (11%)

Query: 67  GAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPEN 116
           GA      +A +L+D      S  I  + P +V              + A  +  K    
Sbjct: 51  GATCYTGHAAENLKDVDMLVVSTAIADDNPEVVAAKRMGIPIVRRGEMLARLMKEKQG-- 108

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV G  GK++  S    + + +GL      PT  I      +         L +    
Sbjct: 109 -IAVAGAHGKTTTTSMTALVLEMNGLD-----PTILIGG----DLSYIGGNAKLGRGDYL 158

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++    +  S               +  +    TN+  DH+DY+ +++    A  R F  
Sbjct: 159 VAEADESDGSFL------------LLDPVVAVVTNIEDDHLDYYGSRENIVKA-FREFLN 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTIS 294
            +P+   A++  DD   ++++    +  C +++ G    G    +             +S
Sbjct: 206 KVPESGLAVVCGDDPTVRQLIA---DLTCPLVTYGSYNSGADYTIDSFALQGETTLGQVS 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+     +  +PG   + NAL    +   +G+  + +   L +      R++ +G   
Sbjct: 263 FRGEKLGQLVLNVPGYHNLLNALAVVAVGRYVGLSFSQIAAALREFKGAKRRYQLIG-EV 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +G +I  DYAH    ++  L+  R    GRII VF         +       +   ADI 
Sbjct: 322 KGAKIVDDYAHHPTEIKATLQAARQAHPGRIIAVFQPHRFTRTRQLFREFGESFAHADIL 381

Query: 414 IVTDDNPRSEDPEK------IRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I+TD  P  E P +      I   I        I      EA     + + + D+++  G
Sbjct: 382 ILTDIYPAGEKPIEGVHTKLIVDAIAKRPNQQVIYLPTLEEATNFLTQQVTEGDLVLTMG 441

Query: 467 KGH 469
            G 
Sbjct: 442 AGD 444


>gi|282878040|ref|ZP_06286848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
 gi|281299875|gb|EFA92236.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
          Length = 446

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/400 (15%), Positives = 129/400 (32%), Gaps = 38/400 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR      +F A+ G   +G+ F   A+ +G    V+            I+ +   
Sbjct: 16  VTTDSRDCPKDSMFFALKGTSFNGNEFAQSALEKGCAYAVIDQK------EYQIQEDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++  + L   A+         I+ +TGT+GK++    +  +        +  G  + 
Sbjct: 70  ILVEDCLQTLKQLANYHRRTLGTPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                +  V + AS  G  Q  +   +      TN+
Sbjct: 130 EIGVPKTLLCLKP-------------EHEMAVVEMGASHPGDIQSLVTVAEPDYALITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           GR H+    + +     K  L++ +     +    I  D+ Y KE+  R H    + +  
Sbjct: 177 GRAHLQGFGSFEGVMRTKAELYDYMQQHKPQGLVFINQDNEYLKEMF-RTHCPNVKAMGY 235

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV-----------EGKDFDFLFPLPGEFQVYNALVAA 319
               +     +   +     +               + +  +    L G + + N L A 
Sbjct: 236 AQTDRPDISIRGEVVSCAPYLKFRWRKTAAAPSPREDTRWHEVQTQLIGAYNLDNMLAAI 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +    G+    +   L        R +   T +    I   Y     S+E  L N + +
Sbjct: 296 TIGSHFGVSDEQINHALAGYVPSNNRSQLQIT-AHNKLIVDAYNANPTSMEAALTNFQRM 354

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIV 415
              + + + G   +          KI   +A    D   +
Sbjct: 355 DVPKKMAILGDMRELGDVSMAEHQKIVDLIATLNLDKVWL 394


>gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
 gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
          Length = 443

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 141/391 (36%), Gaps = 35/391 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+D+R+I  G I+ A+ G   +G+ F  +A+ +GA+  V+             +++ 
Sbjct: 12  TGVSTDTRNIAKGSIYFALKGASFNGNTFAAEALEKGAQYAVIDE--------VAYQTSD 63

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +++V +    L   A+         ++ +TG++GK++    ++ +  +      Q+   
Sbjct: 64  KMILVSDVLTTLQELATYHRNTLKTLVIGITGSNGKTTTKELIKSVLSQ------QLNVV 117

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +T  +   +  +           LS      +  V + A+  G      +  +   G  T
Sbjct: 118 ATQGNLNNNIGVP-------LTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYIT 170

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-------- 262
           ++G+ H++   + +     K  L++ L   +   I  AD+  ++ ++    N        
Sbjct: 171 SIGKAHLEGFGSFEGVIQTKGELYDYLKAHQKTIIANADNPITEALLADYDNDYSFGVGK 230

Query: 263 -AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---KDFDFLFPLPGEFQVYNALVA 318
                V  VG Q   I  +       ++   + +EG           L G +   N   A
Sbjct: 231 GVNVAVQCVGTQPVTIQFEDASTQTTEEGERVLIEGFTDAPTVATSHLVGSYNFTNIAAA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                   + +  +   +E       R + +   S    +   Y    +S+   + N+ T
Sbjct: 291 VAFGKFFKLSNEAIKRGIEAYIPQNNRSQLMQWGSN-TVLLDAYNANPSSMAAAIDNLLT 349

Query: 379 ITS-GRIIVVFGCGGDRDQGKRPIMGKIALD 408
           ++   + +++ G   +          +I   
Sbjct: 350 MSDEKKKVLILGDMFELGNYAAEEHQRIVDK 380


>gi|225174456|ref|ZP_03728455.1| UDP-N-acetylmuramate/alanine ligase [Dethiobacter alkaliphilus AHT
           1]
 gi|225170241|gb|EEG79036.1| UDP-N-acetylmuramate/alanine ligase [Dethiobacter alkaliphilus AHT
           1]
          Length = 461

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 161/436 (36%), Gaps = 51/436 (11%)

Query: 48  AIVGNKED-GHL--FIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFL 102
           A  G +   GH   ++      GAE ++ S+A      +++A +++  PI          
Sbjct: 47  AREGAEVHQGHDKSYVD-----GAELVIYSTAIPRHNPEYAAAVQAGLPIW------HRS 95

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            L A  L G+     +A+ GT GK++  S V ++    GL           ++F      
Sbjct: 96  KLLAHFLNGRFG---IAIAGTHGKTTTTSMVAKVLTSGGLDP---------TAFIGGVLN 143

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                  + ++   ++    +  S    +  L               TN+  DH+++++ 
Sbjct: 144 DFGGNARIGRSQYVVAEADESDNSFLRYNASL------------AVVTNIEADHMEHYEG 191

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 +  R F + +  E  AI+YA+D Y  +++    +   ++++ G          +
Sbjct: 192 DFDLLLSGYRQFLKNIKPEGTAILYAEDQYLGDMV---PDHLSKIITYGRDKGDYRATDL 248

Query: 283 CAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                  + T+   E +  +    +PG   V NAL A  + + +G+  A + + L +   
Sbjct: 249 RPQGWGTRFTVRRGEAELGEIFLHVPGSHNVLNALAAVVVGLELGVSFADIQKGLGEFRG 308

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              RF+F+        +  DYAH    +++ L+  R+    R+I VF             
Sbjct: 309 ADRRFQFLYQK-NDLLVIDDYAHHPTEVQVTLQAARSNKPRRVIAVFQPHRYSRTQYFMD 367

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               +   AD   +      SE+P +      +   I        +  +  E +   + M
Sbjct: 368 DFARSFGQADKVFLHRIYAASEEPLEGVSSSVLAERIRAQGVDVEQIDDENEIVEKVLAM 427

Query: 456 LNKQDVLVVAGKGHET 471
           L   D+++  G G  T
Sbjct: 428 LQAGDMVLTMGAGDVT 443


>gi|116328698|ref|YP_798418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330644|ref|YP_800362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121442|gb|ABJ79485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124333|gb|ABJ75604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 466

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 156/413 (37%), Gaps = 28/413 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL-QDFS 83
           ++E  I  V++ S  ++   +F+ + GN+ DGH FI  A+++GA   +V   + + ++F 
Sbjct: 25  YKESPITTVTTASTEVEKNSLFIPLRGNR-DGHEFIGDALSRGASYFLVEEDHPIRKNFD 83

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           +  R+    + V +T   L   A+    +    ++AVTG+SGK++    +    +     
Sbjct: 84  SKERAKA--IPVKDTLVSLGKLAAFHRSRFNPIVIAVTGSSGKTTTKEILGNCLKNLEEP 141

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
              +                  + I L   L  +S +    V     +H  +  RL  I 
Sbjct: 142 VLVV------------TEKNYNNEIGLPFTLFRISDRTRIVVCELGMNHKGEIARLTQIA 189

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K      T +G  HI++  +Q+    AK+ + E L+ K           YSK +      
Sbjct: 190 KPDFALITTIGTAHIEFLGSQKNIAKAKVEVAEGLV-KGGKLFYPDTGEYSKILKSTLRR 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G R++ V     F  L+K  +          +E +D +  + LPG   + N  +A    
Sbjct: 249 HGSRLILVKPNHIFSVLQKRPSG-------FLLEYRDKEIEWNLPGYKLLENLAIAIACL 301

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+ +  +L+ +     V  R        +   I   Y     S+   L+    +  G
Sbjct: 302 ETVGVPTEWILKGISTFKSVDKRLNLQ--KGKYSIINDTYNANYESMLSSLEVTDQLADG 359

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
               VV G   +  +  +    ++    ++   +        D   IR E + 
Sbjct: 360 KEFYVVLGDMKELGKHSQKFHKELGKKCSEFQNLKGLFTFGTDSLWIREEFVK 412


>gi|332885521|gb|EGK05770.1| hypothetical protein HMPREF9456_02572 [Dysgonomonas mossii DSM
           22836]
          Length = 429

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 153/416 (36%), Gaps = 39/416 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           E+S+D+R+     IF A+ G   +G+ +  +AI QG    VV         +        
Sbjct: 15  EISTDTRNSPKDSIFFALKGANFNGNEYAEKAIDQGCAYAVVDEERYATRPN-------- 66

Query: 92  ILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           I++V ++ + L   A     +   + I+A+TGT+GK++    +  +  +           
Sbjct: 67  IILVKDSLETLQELARHHRKQFIKKPIIAITGTNGKTTTKELIYSVLSQ----------E 116

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             + +   +       P+ L   L       +  V + AS  G  +   +      G  T
Sbjct: 117 YNVLATQGNLNNHIGVPLTL---LRIKKEHEIVIVEMGASHVGEIRFLAEMALPNYGLIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NLG  HI+   + +    AK  L+E  +       I+ D  YS  +++        +   
Sbjct: 174 NLGHAHIEGFGSFENVVKAKGELYE-FIRSTKDGKIFID--YSNLLLREMSEGITSIY-Y 229

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +       KV +I     +      K       + GE+ + NAL A  +   +G+ ++
Sbjct: 230 GLEDDLFISGKVTSISPFLALEWKFGSKRNKVQTNMIGEYNLSNALAAITIGKYLGVKAS 289

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           L+ + +E+      R +   T      I   Y     S+   L+N   +     +++ G 
Sbjct: 290 LICKAIEEYVPTNNRSQLKKTEKNM-LIIDAYNANPTSMHAALENFDHMDVNHKVLILGD 348

Query: 391 GGDRDQGKRPIMGKIALDLADI----AIVTDDN--------PRSEDPEKIRAEIIH 434
             +          KIA  ++D      +   DN        PR ++ + ++  +  
Sbjct: 349 MKELGPDTDMEHQKIADYISDHNFERVMFIGDNFSRVKTKYPRFKNLDDLKEYLKK 404


>gi|330874999|gb|EGH09148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 196

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 102/191 (53%), Gaps = 5/191 (2%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F + N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT 
Sbjct: 1   MGRFNLSNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTP 59

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P 
Sbjct: 60  DALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPA 119

Query: 427 KIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I  G     +      R +AI   I   N  DV+V+AGKGHE    + +G++   
Sbjct: 120 SIFDDIRPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPF 178

Query: 484 VDCDIIREILG 494
            D     + L 
Sbjct: 179 SDLQEAAKALA 189


>gi|188995067|ref|YP_001929319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594747|dbj|BAG33722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 434

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 128/378 (33%), Gaps = 28/378 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR      IF A+ G   DG+ F   A+ +G    VV     ++D           
Sbjct: 16  VTTDSRQTPPDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDE--------RY 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+    L   A+         ++ +TGT+GK++    +  +   +    +  G    
Sbjct: 68  LLVDDVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEG---- 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L   +   +  + + A+  G         +   G  TN+
Sbjct: 124 ------NLNNHIGVPLTL---LRLKAEHRIAIIEMGANKPGDIAELTRIARPNFGLITNI 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ +  +     +  DD    ++     + G + +S G 
Sbjct: 175 GRAHLQGFGSLEGVRRTKEELYDFIRAEGGILFLNFDDDTLIDM-----SQGLQSVSYGT 229

Query: 273 QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    + A +     + +     +      L G++ + NAL A        +    
Sbjct: 230 SADATVRGLIVANNTPYLCLDLFDSSNEQQVCTNLVGDYNLPNALAAITAGRFFDVPDEA 289

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
           ++  L        R +++ T      I   Y     S+   L N  +  T   ++++ G 
Sbjct: 290 IVSALATYKPSNNRSQWIETERGNSLIVDAYNANPVSMRAALDNFDSLHTDKPLVLILGD 349

Query: 391 GGDRDQGKRPIMGKIALD 408
             +     +     +   
Sbjct: 350 MNELGAESKREHMALLER 367


>gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 456

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 160/454 (35%), Gaps = 40/454 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +    +S DSR+I    +F+AI G   DGH F+ + + +G +A+V+            + 
Sbjct: 26  QTFKNISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGVKAVVI-----RDGMQHLLP 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P  +V NT +     A          ++ +TG+ GK++    + ++ ++ G    +I
Sbjct: 81  EKFPYWLVPNTLESFQKLALHKRRTLNIPVVGITGSVGKTTTKEMMGEVLKQLG----KI 136

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T    +       T     +  K L          + +     G  ++     +    
Sbjct: 137 KLTQLNYNNEIGVGRTILDSDFKDKIL---------IIEMGMRGLGQIENLSKFSEPDIA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN---AG 264
             TN+G  HI    +++    AK  + + L P     II A+D + +E +K+  +     
Sbjct: 188 VITNIGSSHIGILGSKENITYAKCEITKYLKP-SGVVIIPANDLFLEETLKKNWSGRIIK 246

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +L +  +   I+ K +    N+   +I +E K F+           +N L    +   
Sbjct: 247 VDLLDINQKVDSINKKNLIGFFNRSNNSIIIEDKLFEISLKGF--HNAFNFLFVYAVAKE 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGR 383
            GI+         K + +          S+   IY   Y  +  SL+  + N+    +  
Sbjct: 305 FGIEFKDTN----KFNFLTLDGRNKIIKSKKTVIYDETYNASPESLKACIINLLNNPNNH 360

Query: 384 IIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            ++       G    +  + +   I        I   D     + E   A+ +     FI
Sbjct: 361 FLIFGSIQELGSKSKKYHKELFDFIVKSDIKKCIFICD----RNDEIYYADYLKKSTKFI 416

Query: 441 EKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
              +     I T  +   K D ++V  KG     
Sbjct: 417 FFNDVNKVGI-TINKYTKKGDFILV--KGSRNWQ 447


>gi|317504089|ref|ZP_07962091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
 gi|315664761|gb|EFV04426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
          Length = 446

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 155/424 (36%), Gaps = 40/424 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR+     IF+A+ G   DG+ F   A+ +G    ++      +        N  +
Sbjct: 24  ITTDSRNCPKDSIFLALKGASFDGNKFAKAALEKGCAYAIIDEPAYAE------ADNDRL 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  K     A          ++ +TGT+GK++    V  +         +     T
Sbjct: 78  ILVDDCLKTFKEIAREHRRSFQIPVIGITGTNGKTTTKELVSAVLAE------RYRVMHT 131

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D  +           L   ++  +  V + AS  G  +  +  ++   G  TN+
Sbjct: 132 EGNFNNDVGVP-------KTLLRLDATHEIAVVEMGASHPGDIEKLVTYVEPTCGMITNV 184

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +A   E+ ++      R+++ G 
Sbjct: 185 GRAHLLGFGSFEGVKRTKGELYDYLKAHDGLLFLNESNADLVEMARQ--REMNRIMTYGQ 242

Query: 273 ------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 QG+ +          +   T   + + +D    L G + + N L A  + +  G
Sbjct: 243 SDDANVQGEVLDCAPFLRFTWRNMATTESKVRTYDVQTHLIGAYNIDNMLAAITIGLHFG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    +   L        R +   T ++   I   Y    +S+   ++N + +     + 
Sbjct: 303 VTPEQINHALSHYIPANNRSQLEVT-AKNKLIVDAYNANPSSMAAAVENFKLMNVEHKMA 361

Query: 387 VFGCGGD----RDQGKRPIMGKIALDLADIAIV-------TDDNPR-SEDPEKIRAEIIH 434
           + G   +         + ++ K+A D      +       T    R  ++ ++++AEI  
Sbjct: 362 ILGDMRELGEVSALEHQKLVDKLAEDGFKEVWLVGEEFGKTQTAFRKFKNVDEVKAEIAA 421

Query: 435 GIPG 438
             P 
Sbjct: 422 HCPE 425


>gi|254487020|ref|ZP_05100225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
 gi|214043889|gb|EEB84527.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
          Length = 478

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 145/397 (36%), Gaps = 39/397 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +QAG +FVA+   + DG  F+  A+ +GA A +VS           +  + 
Sbjct: 24  DGVSIDTRTLQAGDLFVALKDVR-DGQDFVATALEKGAGAALVSR------VPDGVADDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+  K L    +    +    ++AVTG+ GK+S    +  I    G +   +   
Sbjct: 77  PLLIVDDVLKGLEALGAAARARTSAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASV--- 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
                       +  +   +   L+ +       V     +H  +   L  + K  A   
Sbjct: 134 -----------DSYNNHWGVPLTLARMPVDTDYAVIEIGMNHPGEISPLAILTKPDAAMV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++           K  +F+ L P    A+I AD  ++  +M +A +   R + 
Sbjct: 183 TTVAAVHLEAFDDVAGIALEKAAIFDGLEP-GGVAVINADIDHAAILMAKAVDRRLRDIE 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G       LK V    +   V    +G    F    PG     NAL A  +  A+G D 
Sbjct: 242 FGENAYHFKLKDVQVQGDVTVVQADADGTPLLFKIGTPGRHFAMNALGALAVAQAMGADL 301

Query: 330 ALVLEHLEKLHVVPGR-------FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---- 378
           AL    L +     GR        + V T      I   Y     S+   L+ +      
Sbjct: 302 ALAAASLGRWTPYKGRGVREVIHLDSVETRMTLSLIDDSYNANPTSMAAALEVLAASEVT 361

Query: 379 -----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                ++ GR I   G   +    +  +   +A   A
Sbjct: 362 HDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDA 398


>gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 457

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 143/381 (37%), Gaps = 31/381 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +S DSR      +F+AI G   DGH FIP+ + +G +++V+      +     + SN
Sbjct: 28  FKNISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVLNKGVKSVVI-----KKGMQRLLPSN 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P   V++T +     A     K    I+A+TG+ GK++    +  +  + G        
Sbjct: 83  FPYWAVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIK----- 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +S    +N +           L+      V  + +     G  ++     +      
Sbjct: 138 ---LSHANFNNEIGVGLT-----ILATDIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVI 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN---AGCR 266
           TN+G  HI    +++   +AK  +  + L  E   II A+D + ++ +K +        +
Sbjct: 190 TNIGTAHIGLLGSKKNITHAKCEI-SKFLNPEGVVIIPANDPFLEKTLKESWKGRVIKVK 248

Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +L++  Q + F     +   +N  + TI +E   F+            N L A  +   +
Sbjct: 249 LLNIENQEEIFKKDDNLRGFYNPSKKTILIEENTFEISLEGF--HNASNFLFAYAVSKEL 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
           GID A       K   V          S    IY + Y  +  S++  +KN+        
Sbjct: 307 GIDFASFN----KFDFVSFGGRNKILKSLKTTIYDESYNASPESVKACIKNLLE-KPRNK 361

Query: 385 IVVFGCGGDRDQGKRPIMGKI 405
             +FG   +  +       +I
Sbjct: 362 FFIFGSMQELGKESEKYHKEI 382


>gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
 gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
          Length = 444

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 164/453 (36%), Gaps = 54/453 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNT 90
            VS+D+R+I    I+ A+ G   +G+ F  +A+A+GA  A++   AY + D +       
Sbjct: 14  GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+VD+    L   A+    K    ++ +TG++GK++    ++ +  +           
Sbjct: 67  --LLVDDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQ---------- 114

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             I +   +       P+ L   L+      +  V + A+  G         +   G  T
Sbjct: 115 LNIVATQGNLNNNIGVPLTL---LTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYIT 171

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           ++G+ H++   + +     K  L++ L       I  AD+  ++ +++  +N     +  
Sbjct: 172 SIGKAHLEGFGSFEGVIKTKGELYDYLKTHHKTIIANADNPITEALLENYNNVYSFGVGE 231

Query: 271 GYQGKFIHLKK--VCAIHNKQQVTISVEGKDFDF----------LFPLPGEFQVYNALVA 318
           G       L    V        +  + EG   +              L G +   N   +
Sbjct: 232 GVNVSVQCLSTQPVKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAAS 291

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN--- 375
                   + +  + + +E       R + +   S    +   Y    +S+   + N   
Sbjct: 292 VAFGRYFKLSTKAIQKGIESYIPQNNRSQLLQWGSN-TVLLDAYNANPSSMTAAIDNLLS 350

Query: 376 IRTITSGRIIV--VFGCGGDRDQGKRPIMGKIAL-DLADIAIVT-------DDNPRSEDP 425
           + +  +  +I+  +F  G    Q  + I+ K+     A + ++           P+ E  
Sbjct: 351 MNSFPNKVLILGDMFELGDYATQEHQSIVDKLTEHQWAGVYLIGKNFKQTKAPYPQYETF 410

Query: 426 EKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454
           E+   E+   +       + KG+R  A+   I 
Sbjct: 411 EE-FREVFKNLSFQDSLILIKGSRGMALERLIA 442


>gi|330994427|ref|ZP_08318352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
 gi|329758427|gb|EGG74946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
          Length = 463

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 131/405 (32%), Gaps = 32/405 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
                +     VS D+R +  G IF+A+ G   +GH  + +A+  GA  +V         
Sbjct: 20  AASGTDIAGTGVSIDTRTLHPGDIFIALRGENSNGHDHVARALEAGAACVVAHEDCG--- 76

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                 ++  IL VD+T   +   A     +    +LAVTG+ GK+SV   +       G
Sbjct: 77  ------TDPRILRVDDTLAAMQAMARYARARFGGRMLAVTGSVGKTSVKDMLHAALAACG 130

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLD 200
            +   +               +  +   +   L+ L +     V     +H G       
Sbjct: 131 PTHCAV--------------ASYNNHWGVPLTLARLPAGAAYCVCEIGMNHAGEIAPLAA 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR- 259
            ++      T +   H+    + +A    K  +   L        I  D    +   +R 
Sbjct: 177 MVRPDVAVVTTVASSHLGLMGSVEAIAREKAEILLAL--HRGGIGIIPDGVSGQAFFERN 234

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A  AG  V   G  +G  I    V A       ++ + G   +     PG     NA++A
Sbjct: 235 AAQAGATVWRAGTGEGCAIVPGPVRATATGSDFSLRLPGWVGEAHVSAPGRHMAANAMLA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
            G   A G D A  +  L       GR            +  + Y  +  S++  L  + 
Sbjct: 295 LGAACAAGADMARAVAGLATFRPGAGRGAMTKVMQDKVALLDESYNASPASVQAALDLLG 354

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGK---IALDLADIAIVTDDN 419
            +  GR + V G   +                   ADI      N
Sbjct: 355 LVAPGRRVAVLGDMLELGAFAGHEHVSLLPAVRANADIVFCCGPN 399


>gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
 gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
          Length = 478

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 142/397 (35%), Gaps = 39/397 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +  G +FVA+   + DGH F+  A+ +GA A +V+           +  N 
Sbjct: 24  DGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEKGAGAALVT------HVPEGVAENA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V++  + L    +    +    ++AVTG+ GK+S    +  I    G +   +   
Sbjct: 77  PLLIVEDVLRALEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASV--- 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ + +     V     +H G         K      
Sbjct: 134 -----------DSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQMAKPDVAMV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++           K  +F+ L P    A+I AD  ++  +M +A +   R + 
Sbjct: 183 TTVAAVHLEAFANVAEIAVEKAAVFDGLQP-GGVAVINADIEHAAILMAKAVDRRLREVE 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G  G    L  V    +   V    +G    F    PG     NAL A     A+G D 
Sbjct: 242 FGEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASAQAMGADL 301

Query: 330 ALVLEHLEKLHVVPGR-------FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---- 378
           AL    L +     GR        + V T+     I   Y     S+   L+ +      
Sbjct: 302 ALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAALEVLAAAEVT 361

Query: 379 -----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                ++ GR I   G   +    +  +   +A   A
Sbjct: 362 HDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDA 398


>gi|170738609|ref|YP_001767264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
 gi|168192883|gb|ACA14830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
          Length = 485

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 165/459 (35%), Gaps = 40/459 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              +  ++ +S D+R ++ G +F AI G + DGH F+  A+A+GA A VVS A +     
Sbjct: 22  GAPDAPLSGLSIDTRTLKVGDLFFAIRGEQRDGHDFVRDALARGAGAAVVSQARAADLAG 81

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A      P    D     +   A+    +    I+AVTG+ GK+     ++ +    G +
Sbjct: 82  AGPLVAVPEAGEDPVLAAMRKLAAAARARSRARIVAVTGSVGKTGTKEALRHVLAAQGAT 141

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGI 202
              +               +  +   +   L  + +     V     +H G        +
Sbjct: 142 HASV--------------ASYNNHWGVPLTLGRMPAASAFGVFEIGMNHAGEIAPLTRLV 187

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      T +   HI++ +      +AK  +F  L P    A+I  D+ + + +   A  
Sbjct: 188 RPEVAVVTTVEPVHIEHFRALSGIADAKGEIFCGLEP-GGVAVINRDNPHFERLRDHALA 246

Query: 263 AGC-RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +   R++S G   +  +  ++V    +   V   V G    +    PG     N+L    
Sbjct: 247 SRAGRIVSFGEHPRADVRAERVVMRPDLSIVDARVMGIPVTYQLGTPGRHTALNSLAVMA 306

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIR 377
              A+G D AL    L +L    GR E      R G    +   Y     S+   L  + 
Sbjct: 307 AVHALGADLALAALSLAQLRPPVGRGERTLLRLRDGEALLVDESYNANPASVRAALATLA 366

Query: 378 TI----TSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            I     + RI V   +   G +  +  R +   +A    D+  V            + A
Sbjct: 367 GIEVQGRARRIAVLGDMLELGAEAARLHRDLAAAVAEHGIDLVFV---------AGPLMA 417

Query: 431 EIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
           E+   +P         +  + +   +  +   D ++V G
Sbjct: 418 ELFEALPAGTRGVAAASSADLLDAVVAEIRPGDAVMVKG 456


>gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 300

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 114/319 (35%), Gaps = 25/319 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL+  L    +   +     VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 3   FSELVVPLDARLVGG-DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVG 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSV 129
            +V              +  P LVV +TRK L+   +          + AVTG+SGK++V
Sbjct: 62  ALVEHEVQ--------GAALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTV 113

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I +  G      G  +                      L          + + A
Sbjct: 114 KEMLASILRTRGPVLATRGNLNNELGVPLT-------------LLELAPEYTSAVIELGA 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G   + +   K      TN G  H+           AK  + E L      A++  +
Sbjct: 161 SRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGL-DAGGTAVLNLE 219

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D       KRA N      ++      ++  ++          T++           L G
Sbjct: 220 DKAFPIWRKRAGNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQLNLLG 279

Query: 309 EFQVYNALVAAGLCIAIGI 327
              V NAL AA    AIG+
Sbjct: 280 THNVSNALAAAAASCAIGV 298


>gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
          Length = 465

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 166/459 (36%), Gaps = 48/459 (10%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  +   V +DSR  QAG ++VA  G   DGH F+  A  +GA A++V          
Sbjct: 18  GNDVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHE------- 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQR 139
             +    P +VV+++ + L   A     K       +++A+TG+ GK++    + QI   
Sbjct: 71  --VDEAVPQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSE 128

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +             + +N +  P  + LA   +         + + AS  G   +  
Sbjct: 129 DGPTVAP--------KLSFNNEVGLPLTVLLADETTRHL-----VLEMGASGPGHITYLT 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +         +G  H+      +    AK  L +   P   P I+  DD   + +   
Sbjct: 176 DIVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKGTRP-GGPVILNTDDPNVEAMAPL 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A     R  + G +   +  + V     ++   T+     +      + G   V NAL A
Sbjct: 235 ATGRVIRFSASGNERADVVARDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTSNSLEMILK 374
           A   + +G+    V   L +   +      V      G     I   Y    +S+   + 
Sbjct: 295 AAGALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIA 354

Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            + +I    + I V G   +  +  + +  ++   +AD  + T           + A+  
Sbjct: 355 ALASIGRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLI--------GLGADAH 406

Query: 434 HGIPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAG 466
           + + G  E  NR       +A R A+E      V++V G
Sbjct: 407 YYLEGAPEVPNREVAADPQDAARLALEHAEDGAVVLVKG 445


>gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Xanthobacter autotrophicus Py2]
 gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Xanthobacter autotrophicus Py2]
          Length = 493

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 140/395 (35%), Gaps = 29/395 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            ++     +  +S DSR +  G  F AI G   DGH ++ +A+  GA   VV+      D
Sbjct: 35  AVRGAPHDVTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGAGAALCVVAR-----D 89

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            +    ++ P+LVVD+    L+  A     +    I+AVTG+ GK++    ++      G
Sbjct: 90  RADGFPADAPLLVVDDVLAALTDVARAARARSKAQIVAVTGSVGKTTTKEALRIALGADG 149

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLD 200
            +                +  +  +   +  +L+    +    V     +H G     + 
Sbjct: 150 ETHA--------------SAASYNNHWGVPLSLARFPREARYGVFEIGMNHPGEITPLVR 195

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKR 259
            ++      T +   HI    + +   +AK  +F+ + P    A++  D+     +    
Sbjct: 196 LVRPHVAIVTTVEPVHIAQFSSIEEIADAKAEIFDGVEP-GGAAVLNLDNPLFDRLKAAA 254

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A     R++S G  +G  + LK              V G    F   +PG   V N L  
Sbjct: 255 AARGISRIVSFGSGEGADVRLKDAALKSYCSVAVADVMGTPVTFKVGMPGRHIVQNMLAV 314

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVD--YAHTSNSLEMILKN 375
                  G D AL    L  L   PGR   +    +GG    +D  Y     S+   L  
Sbjct: 315 LAAAKLAGADMALAALALSHLKPPPGRGVPLQLQLKGGQATLLDESYNANPASMRAALDV 374

Query: 376 IRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +        GR I V G   +           +A 
Sbjct: 375 LSRTPVGPRGRRIAVLGDMLELGPDGEAHHAGLAE 409


>gi|34763170|ref|ZP_00144137.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237742554|ref|ZP_04573035.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
 gi|27887168|gb|EAA24272.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229430202|gb|EEO40414.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
          Length = 611

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 155/412 (37%), Gaps = 46/412 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   
Sbjct: 177 LKDFSEILKRGKLNELIFEEFSKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDV 232

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +G   ++  +         T   +  ++ V +T   +   A++   K    ++ +TG+
Sbjct: 233 LDKGTSLVIADN---------TDIKDKRVIKVTDTIATMQDLATKYRNKLDIQVVGITGS 283

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +         +     T  ++                 L+    +   
Sbjct: 284 NGKTTTKDIVYSLLS------VKAKTLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 330

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + + 
Sbjct: 331 VLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKENT- 389

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y  ++          V  VG+     +  +     NK      ++GK+++  
Sbjct: 390 -FVCGDDEYLGKL---------DVNKVGFNENNTYKIESYEFSNKGS-KFILDGKEYEM- 437

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   IG+    + + L+++ +   RF+ +        I   Y 
Sbjct: 438 -SLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI-GNDIYINDAYN 495

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  S++  +  +  I +    I + G   +  + +      +   L D  I
Sbjct: 496 ASPMSMKAAIDTLNEIYNDKYKIAILGDMLELGENEVDYHMDVLNYLLDKKI 547


>gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
 gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
          Length = 453

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/459 (20%), Positives = 167/459 (36%), Gaps = 39/459 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L+  L    ++  + ++   + DSR I++G +FVA+ G++ DGH ++          
Sbjct: 6   LSRLVADLGGH-LRGPDTEVIGAALDSRRIRSGELFVALTGSRADGHDYLSA-------- 56

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSV 129
              ++  +       +    P  +V + R  L+     +        I+AVTG++GK++V
Sbjct: 57  -ARTAGAAAALLERAVPEPLPQWIVADGRGTLAALGCWVREHCAATQIVAVTGSNGKTTV 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I  R G +    G          +       P+ L +            + + A
Sbjct: 116 KEMLAAILARHGATLATSG----------NYNNELGVPLTLCRLQRR---HRYAVLELGA 162

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+ G  +     ++   G  TN G  H+D   +       K  LFE L P +  A+I  D
Sbjct: 163 SAPGQIRRLTQWVRPSVGVITNAGPAHLDGFGSVAGVARGKGELFETL-PDDGIAVINVD 221

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           DA++    + A    C    +  + +              Q+ +  +G+      PL G 
Sbjct: 222 DAFANLWQRLARPRRCITFGLDRRAEVRATTAA-----DGQLELRWDGRVLPVRLPLLGR 276

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
               NAL +A   +A+ +  A +   LE +  VPGR  +      G RI  D Y     S
Sbjct: 277 HNQLNALASAATALALELPGAAIRAGLEAMRPVPGRLCW-REGIGGARILDDTYNANPAS 335

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L   ++ +   +  R +V+       +   R       L  A          R     ++
Sbjct: 336 LAAAIRVLAENSQRRWLVLGDMAELGETAGRLHRRAGQLARAGGV------ERLFVIGEL 389

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAG 466
            A    G     E  +  EA+  A+   L     +++ G
Sbjct: 390 AAASAAGFGLGAECFDDREALVKALSGGLGPDIAVLIKG 428


>gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
 gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
          Length = 870

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/469 (19%), Positives = 172/469 (36%), Gaps = 46/469 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFS 83
           ++ +    S D+R I  G +FVA+ G + DGH ++  AI +GA  ++V + +  S+ +  
Sbjct: 20  KQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLLVETRHIESMPEAE 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                    ++V++TR+ L  +AS +  +    I+AV G  GK+S+   +  +  R    
Sbjct: 80  QERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMKEAIASVLSR---- 135

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGI 202
                     ++F           + +  +L  L  Q    V      H  + H+L   +
Sbjct: 136 --------NYATFRSWKN--YNDLLGIPLSLGRLEPQHEYAVLELGCDHPGELHKLCQMV 185

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G  TN+    + Y  + +        L    LP E    +   DA   E++     
Sbjct: 186 KPHIGILTNVAPVQLQYFGSLEHLAKELSELL-YSLPPEGCFWLNDSDARLVEIVAHYQQ 244

Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNAL 316
               A   +  +G   + I+  ++         T+  EG+         L G   +   L
Sbjct: 245 QRGSAVPDIRPLGI--REINETQIRVGWEGLSFTLEQEGEMGTLTLASRLLGRQHISTML 302

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +  A G+ +  V E LE+L  + GR   +        +   +  +  S+   L+ +
Sbjct: 303 AAYRIGRACGMSAEEVSEALEQLGPIEGRLNPLPGVYESRLLDDTHNASPGSVLAGLQAL 362

Query: 377 RTIT--SGRIIVVFGCGGDRDQGKRPIM---GKIALDLADIAIVTDDNPRSEDPEKIRAE 431
             +T   G+ I + G   +    +       G+ A    D  I+     R E    I   
Sbjct: 363 DELTNEGGKRIAILGEMLNLGYYQDDWYEQIGEQAASKVDYLIL-----RGERTALIAES 417

Query: 432 IIHGIPGFIEKG---NRIEAIRTAIEMLNKQ-----DVLVVAGKGHETV 472
                    +        +A + A   L ++     +V+++  KG E  
Sbjct: 418 ARQAGLASEQIELVSTHEDAAQLARAYLEREGEAGRNVVLL--KGSEAT 464


>gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
 gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
          Length = 826

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/404 (20%), Positives = 162/404 (40%), Gaps = 27/404 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       +E  I+ V +DSR +      +F A+   + DGH +IP+  A+G 
Sbjct: 5   IEKVTTLIGARRYGTKEANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIPELYARGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV     + D   T+ S +  L V  + + L   A R   +    I+ +TG++GK+ 
Sbjct: 65  RNFVVE---VVPDNWETLYSGSNFLKVVGSLEALQRLAERHRDEFLIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  ++L   L+  +  GV    + 
Sbjct: 122 VKEWLYQLLSPQ--------MVVTRSPRSYNSQIGVPLSVWL---LNENTQVGVFEAGI- 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+   G FT+LG  H +   + +A    K+ LF +    ++      
Sbjct: 170 -SKPGEMMALRDIIQPTIGVFTSLGTAHQENFPSIEAKCKEKLCLFHD---TQAIVYSMD 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLP 307
           DD  +  + +  +       S  +     ++K +     +  VT + +G K+  +  P  
Sbjct: 226 DDVLTHCLAQYNYQGEQLSWSTKHTDATFYIKSIEKKDIETTVTYTWKGGKEAQYKLPFI 285

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
            +  V N++  A + + +G+  A + E + +L  V  R E V     G  +  D Y    
Sbjct: 286 DDASVENSITCAVVALHLGVTQAALAERMAQLEPVAMRLE-VKEGQHGCTLINDSYNSDY 344

Query: 367 NSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           NSL++ L  +         +  ++        +  + +  K+A 
Sbjct: 345 NSLDIALDFMNRRPDHKGRKRTLILSDILQSGEDDKELYNKVAF 388


>gi|154252859|ref|YP_001413683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156809|gb|ABS64026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
          Length = 479

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 174/450 (38%), Gaps = 42/450 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS DSR ++AG +FVAI+G   DGH ++  A+ +GA A +VS+       +  +R+  
Sbjct: 27  SGVSIDSRTLEAGDLFVAIIGENSDGHAYVEGALKKGAAAAIVSAP------TEAMRAAG 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+++V +T   L+        +    ++AVTG+ GK+     ++ I    G +       
Sbjct: 81  PLVIVTDTLAALNALGRAARARTKAKVVAVTGSVGKTGTKEALKLILSEQGATHASAASY 140

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + +            +  +                 V  +  G        ++      T
Sbjct: 141 NNLWGVPLSLARMPAATRF-------------GIFEVGMNHPGEITPLSKLVEPFVSLIT 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269
            +   H+++  + +   +AK  +F+ L  K   AI+  D+ + + +  +A  +G  R++S
Sbjct: 188 TVEAVHMEFFDSVEQIADAKGEIFDGL-QKGGVAILNRDNPHYERLRAKAEKSGAGRIIS 246

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G ++     L+K     +   V+ ++ G+   +   +PG   V N+L       A+  D
Sbjct: 247 FGEHEEADARLEKAALKEDCSCVSATICGQKVTYKLAVPGRHIVMNSLAMLACVHALEAD 306

Query: 329 SALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD--YAHTSNSLEMILKN---IRTITSG 382
            A+    +  L    GR E  + +   G    VD  Y     S+   L      +   +G
Sbjct: 307 LAMAALAMASLKAPKGRGERHIVSAPLGQFTLVDESYNANPVSMRAALDALGRAKPEGNG 366

Query: 383 RIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           R I V       G    +  R +   +     D+      + R     ++   +     G
Sbjct: 367 RRIAVMGDMLEIGETSIEMHRGLADAVREAGIDLVFACGPHMR-----ELYKALPAAAQG 421

Query: 439 FIEKGNRIEA--IRTAIEMLNKQDVLVVAG 466
              + +      +R A+E     DV++V G
Sbjct: 422 AYAETSAELGPLLRDAVE---PGDVVMVKG 448


>gi|15609294|ref|NP_216673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanyl ligase MurF [Mycobacterium
           tuberculosis H37Rv]
 gi|31793337|ref|NP_855830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium
           bovis AF2122/97]
 gi|121638039|ref|YP_978263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661973|ref|YP_001283496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148823366|ref|YP_001288120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|218753880|ref|ZP_03532676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis GM 1503]
 gi|224990533|ref|YP_002645220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|254551195|ref|ZP_05141642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260205451|ref|ZP_05772942.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis K85]
 gi|289574840|ref|ZP_06455067.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289762318|ref|ZP_06521696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|294993543|ref|ZP_06799234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis 210]
 gi|306776407|ref|ZP_07414744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|306798015|ref|ZP_07436317.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|61228235|sp|P0A5L4|MURF_MYCTU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|61228236|sp|P0A5L5|MURF_MYCBO RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2104321|emb|CAB08670.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Rv]
 gi|31618929|emb|CAD97034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis AF2122/97]
 gi|121493687|emb|CAL72162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148506125|gb|ABQ73934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148721893|gb|ABR06518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|224773646|dbj|BAH26452.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289539271|gb|EFD43849.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289709824|gb|EFD73840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|308215195|gb|EFO74594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|308341705|gb|EFP30556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|326903774|gb|EGE50707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis W-148]
          Length = 510

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 93/514 (18%), Positives = 156/514 (30%), Gaps = 82/514 (15%)

Query: 3   LQDLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + +L      E++      I P     R++   V  DSR I  G +F+A+ G + DGH  
Sbjct: 1   MIELTVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHDH 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
                         + A       A      P +VV       ++ A  L   +  +   
Sbjct: 61  AA-----------SAVAAGAAVVLAARPVGVPAIVVP-PVAAPNVLAGVLEHDNDGSGAA 108

Query: 117 ----------------------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
                                 I+ +TG+SGK+S    +  +    G      G  +   
Sbjct: 109 VLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNEL 168

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                    T    YL   ++             A  HG      +      G   N+G 
Sbjct: 169 GHPWTVLRATRRTDYLILEMA-------------ARHHGNIAALAEIAPPSIGVVLNVGT 215

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+    +++     K  L  + +P     ++ ADD     + K       RV S    G
Sbjct: 216 AHLGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTG 273

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                        + + T+       +    + G+ QV NAL AA + +  G     V  
Sbjct: 274 DVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAA 333

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVF 388
            L     V      V T   G  +  D Y    +S+   L+ +  I            V 
Sbjct: 334 ALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVL 393

Query: 389 GCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           G   +  +       +I      LD++ + +V     RS         ++ G  G  E  
Sbjct: 394 GEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEAT 450

Query: 444 NRIEAIRTAIEMLN-------------KQDVLVV 464
               A RTA+ + +               DV++V
Sbjct: 451 ADHGADRTAVNVADGDAALALLRAELRPGDVVLV 484


>gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 553

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 163/480 (33%), Gaps = 62/480 (12%)

Query: 1   MKLQDLIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           ++L++LI     +L  +  S    +     +   S+DSR I+    F A+ G   DGH F
Sbjct: 4   IRLKELIRATSGQLFFSADSAMRKEAMNYVLLGTSTDSRTIKRCEAFFALKGENFDGHAF 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A+VVS     + + A +    P ++V++T   L   A+     +   ++A
Sbjct: 64  VERAVRAGAVALVVSDLKCAELWQAEL----PTILVEDTLTALQKLAAYYRQNYLHTLVA 119

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+ GK+S    +    +          PT  +S   ++       P  +   L   S+
Sbjct: 120 ITGSVGKTSTREMIAAALR----------PTLAVSCTGENLNNEIGVPQTV---LKVRSA 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  V +     G         +      TN+G  HI+   +Q A   AK  +   L  
Sbjct: 167 CDVAVVEMGMDHAGDLTKLSRLAQPDIAVITNIGYCHIEQLGSQMAIMRAKAEIINGL-K 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-----------------------GYQGKF 276
            +   ++ ADD + +++         +                           G     
Sbjct: 226 ADGVLLLNADDPFLRQLAAEQKGKIKQAFVALNTCPPDLPGDCLVATDVKIEVDGCASFI 285

Query: 277 IHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           I L++   +     +   V+         P+PGE  V NAL        +     L    
Sbjct: 286 IKLQQAPDLEKYGTMEAFVDSNRLPRIKLPVPGEHHVINALFGLATAHLLHQPLTLAANG 345

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI---IVVFGC- 390
           L    V+  R      N+ G  +  D Y     S+   +K +  +        I V G  
Sbjct: 346 LRDFSVIGNRQRI--MNADGVVLINDTYNAAPESIRAGVKTLCFLAHSEKRRAIAVLGGI 403

Query: 391 ---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              G   D+    +   +A        +              A +  GI    + G++ +
Sbjct: 404 AELGNMADRLHYELGRYLATADLAEIWLCGPY---------VAAVAQGIADGDQAGDQAD 454


>gi|34540839|ref|NP_905318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
 gi|34397153|gb|AAQ66217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
          Length = 420

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 131/378 (34%), Gaps = 28/378 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   +  IF A+ G   DG+ F   A+ +G    VV     ++D           
Sbjct: 2   VTTDSRQTPSDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDE--------RY 53

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+    L   A+         ++ +TGT+GK++    +  +   +    +  G    
Sbjct: 54  LLVDDVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEG---- 109

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L   +   +  + + A+  G         +   G  TN+
Sbjct: 110 ------NLNNHIGVPLTL---LRLKAEHRIAIIEMGANKPGDIAELTRIARPNYGLITNI 160

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ +  +     +  DD    ++     + G + +S G 
Sbjct: 161 GRAHLQGFGSLEGVRRTKGELYDFIRAEGGILFLNFDDDTLIDM-----SQGLQSVSYGT 215

Query: 273 QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                   ++ A +     + +     +      L G++ + NAL A        +    
Sbjct: 216 SADATVRGRIVANNTPYLCLDLFDSSNEQRVCTNLVGDYNLPNALAAITAGRFFDVPDEA 275

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
           ++  L        R +++ T      I   Y     S+ + L N  +  T   ++++ G 
Sbjct: 276 IVSALATYKPSNNRSQWIETERGNSLIVDAYNANPVSMRVALDNFDSLHTDKPLVLILGD 335

Query: 391 GGDRDQGKRPIMGKIALD 408
             +     +     +   
Sbjct: 336 MNELGAESKREHMALLER 353


>gi|288929828|ref|ZP_06423671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288328929|gb|EFC67517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 433

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 147/419 (35%), Gaps = 35/419 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   AG IF A+ G   +G+ F   A+ QG    VV  A           ++   
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCTFAVVDEA------EFCPPNDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  +   L A          I+ +TGT+GK++    +  +  +      +     T
Sbjct: 70  ILVDDVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGQ------KYNVLYT 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + +F  D  +           L       V  V + AS  G  +  ++ ++      TN+
Sbjct: 124 LGNFNNDIGVP-------KTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    + +     K  L++  + +     ++ D A +  +M  A            
Sbjct: 177 GMAHLQGFGSFEGVVKTKGELYD-FMRQSKRGKVFID-ANNPHLMGIAEGLDLVTYGTPA 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +       KV +     +     EG  + +    L G + V N L A  + + +G+ +  
Sbjct: 235 RPDLFVSGKVVSAAPFLRFAWQREGGAWNEVQTHLVGAYNVLNMLAALSVGLFLGVSAED 294

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
               L        R +   T +    I   Y     S+ + L N   +     + + G  
Sbjct: 295 ANRALANYVPSNNRSQLEET-AHNKLIMDAYNANPTSMSVALNNFHDMEVPHKMAILGDM 353

Query: 392 GDRDQGKRPIMGKIALDLA-----DIAIVTDDNPRSE-------DPEKIRAEIIHGIPG 438
            +     +     I   L+     ++ +V  +  R+        + E++ AE+    P 
Sbjct: 354 LELGAVSQSAHQAIVDQLSQLALDEVWLVGSEFARTSCAFRKFNNVEEVIAELKKHRPE 412


>gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 776

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 139/429 (32%), Gaps = 51/429 (11%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLY 110
           + DG         +GA+AIVVS+A    +       +   P L   +    L    +   
Sbjct: 57  RTDGQR-AENV--RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAALV---NEYD 110

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G      +AV G+ GK++  S +     R+      + PT  +     D           
Sbjct: 111 G------IAVAGSHGKTTTTSMIGVTLDRA-----SVSPTVIVGGEVPDLGTNAKLGTSR 159

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                   S G                    ++      TN+  DH+D++ T +    A 
Sbjct: 160 YLVSEADESDGSFLK----------------LRPHIAVVTNVEDDHMDHYGTMEKIIEA- 202

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            R F   +  +  A++     Y  E+++R      R +           +          
Sbjct: 203 FRTFISQIDADGTAVLC----YENEILRRLGAETDRTVVSYAIDAAADYRAADIETCGSV 258

Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++ +V  +          +PG   V NAL    +    G+D   + + L   H    RF+
Sbjct: 259 ISFTVFERGTALGRISLHIPGRHNVLNALACVAVARLAGLDFDRIADALAHFHGAKRRFQ 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G   RG  +  DYAH    +   L   R    GR++ VF                   
Sbjct: 319 TKG-KERGIWVVDDYAHHPTEIAATLAAARQTEPGRLVCVFQPHRYSRTQLLRAEFGGCF 377

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             AD+ ++TD     E P      E +  E+        +    R + ++   E +   D
Sbjct: 378 AAADLLLLTDVYAAGEAPIPGISGETLMEEVARQTGQDAVYLPERADLVQYLAEHVRPGD 437

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 438 LVITMGAGN 446


>gi|158834068|gb|ABW81839.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 122/250 (48%), Gaps = 7/250 (2%)

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S I + + LS + +   T  ++E SSH L QHR+  +   A  FTNLGRDH+DYH     
Sbjct: 12  SAIEVQQILSNMLAHKATFAAMEVSSHALVQHRVAALTFAATVFTNLGRDHLDYHGDMVT 71

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKK 281
           Y  AK  LF     +    II  DD   +  + +  NA        +  G+QG ++  +K
Sbjct: 72  YEAAKKSLF--FGHESKKHIINVDDEVGQRWLPQLPNAVAVSTAHHIPSGWQGAWLSAQK 129

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +    N   +         +    L G F V N L+     +A+      +L+   KL  
Sbjct: 130 IQYHENGALIFFDSSWGKGELQSQLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQP 189

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKRP+
Sbjct: 190 IPGRMEVFKKVGR-PTVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKRPL 248

Query: 402 MGKIALDLAD 411
           MGKIA  LAD
Sbjct: 249 MGKIAETLAD 258


>gi|78212659|ref|YP_381438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9605]
 gi|78197118|gb|ABB34883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9605]
          Length = 449

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 146/444 (32%), Gaps = 30/444 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +  V +DSR +QAG  FV +VG + DGH F+ Q     A+A VVS  ++       
Sbjct: 22  PDALLGRVCTDSRQLQAGDFFVPLVGERFDGHHFLEQLPEHKAQAAVVSRCWAEP----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  +     VD+T       A        + ++AVTG++GK++    ++      G    
Sbjct: 77  LPPDLLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAGKTTTRELIRAALAPLGAIQA 136

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G                         L   ++     + +     G  +      +  
Sbjct: 137 SEG-------------NNNNDVGVPLTVLGATAADAALVIEMGMRGLGEIERLSYCTEPD 183

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  HI    +++A   AK  +   L P+    +I A D   +  +    +   
Sbjct: 184 LAVITNIGTAHIGRLGSREAIAAAKCEITAGLHPQ-GTVVIPAGDPLLESALSAVWSG-- 240

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           RVL V           +    N  Q+ I  +         L G     N L+A  +   +
Sbjct: 241 RVLRVRLADDPEVESDLVGDINGDQLLIDAD----RLPLQLEGRHNARNLLLAVAVADQL 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+        L+ + V             G  +  +  + S    +   ++     GR  
Sbjct: 297 GVS----RRALQAIQVTVPGGRNRRLQQGGLTLLDETYNASPEAVLAALDLLAAQPGRRF 352

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            V G   +       +  ++A     + +            K  AE+   +P      N 
Sbjct: 353 AVLGTMLELGDRSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAEVAASLPHLQLVSNP 412

Query: 446 IEAIRTAIEMLNKQDVLVV-AGKG 468
            +A       L   D L++ A +G
Sbjct: 413 EDAAAPLAAWLEAGDFLLLKASRG 436


>gi|315656830|ref|ZP_07909717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492785|gb|EFU82389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 483

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 85/479 (17%), Positives = 164/479 (34%), Gaps = 34/479 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L   + + P +   R      +DSR +  G +FVA+ G   DGH F+     
Sbjct: 1   MIDMTLDALREAIGLEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVAR 60

Query: 66  QGAEAIVVSSAYSLQ----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----- 116
           +G +  +VS   +        +A       +L V + +  L   A     +         
Sbjct: 61  RGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGT 120

Query: 117 -----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++ +TG++GK++     +Q+    G +   +   +              S  YL 
Sbjct: 121 GKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYL- 179

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                        + + AS  G   +  D   L       +G  H++ + + +A    K 
Sbjct: 180 ------------VLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKA 227

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            + E L P    AI+ ADD   + +  R  +      S                  +   
Sbjct: 228 TILENLGP-SGMAILNADDPRVEAMSGR-TSGRLMYFSTKKNTPVRITDLRLDEAARGSF 285

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G   V NAL AA +    G+  A +   L     V      +  
Sbjct: 286 LLHTPEGSAPVQLQLLGAHHVTNALAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVH 345

Query: 352 NSRGGRIYVD-YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            + G  +  D Y    +S+   L  I ++  + R+++V G   +  +    + G+I    
Sbjct: 346 LADGVDLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYA 405

Query: 410 AD--IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A+  I+++    P ++  E   + +        +  +   A R   E++   D+++V G
Sbjct: 406 ANLGISVLLTVGPMAKHIESAYSALKRDGESH-QVMDATAAGRLLQEIVRPGDLILVKG 463


>gi|304389587|ref|ZP_07371549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327140|gb|EFL94376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 483

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 164/479 (34%), Gaps = 34/479 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L   + + P +   R      +DSR +  G +FVA+ G   DGH F+     
Sbjct: 1   MIDMTLDALREAIGLEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVAR 60

Query: 66  QGAEAIVVSSAYSLQ----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----- 116
           +G +  +VS   +        +A       +L V + +  L   A     +         
Sbjct: 61  RGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGT 120

Query: 117 -----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++ +TG++GK++     +Q+    G +   +   +              S  YL 
Sbjct: 121 GKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYL- 179

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                        + + AS  G   +  D   L       +G  H++ + + +A    K 
Sbjct: 180 ------------VLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKA 227

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            + E L P    AI+ ADD   + +  R  +      S                  +   
Sbjct: 228 TILENLGP-SGMAILNADDPRVEAMSGR-TSGRLMYFSTKKNTPVRITDLRLDEAARGSF 285

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G   V NA+ AA +    G+  A +   L     V      +  
Sbjct: 286 LLHTPEGSAPVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVH 345

Query: 352 NSRGGRIYVD-YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            + G  +  D Y    +S+   L  I ++  + R+++V G   +  +    + G+I    
Sbjct: 346 LADGVDLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYA 405

Query: 410 AD--IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A+  I+++    P ++  E   + +        +  +   A R   E++   D+++V G
Sbjct: 406 ANLGISVLLTVGPMAKHIESAYSALKRDGESH-QVMDATAAGRLLQEIVRPGDLILVKG 463


>gi|284048638|ref|YP_003398977.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952859|gb|ADB47662.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 461

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 146/424 (34%), Gaps = 47/424 (11%)

Query: 59  FIPQA---IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           FI  A   I + AE +VVS+A      +     R   P++   +         + L  +H
Sbjct: 56  FIGHAACQIER-AEVVVVSTAIHPDNPELVEAHRRQVPVIHRSDVL-------AWLMNRH 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV G  GK++ +S +  I    GL      PT  +     +      S       
Sbjct: 108 --KGIAVAGAHGKTTTSSMLSCITSDCGLD-----PTIVVGGIVNNLGSNAASGKSDWVV 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                S G                            TN+  DH+D++ +Q+    A  + 
Sbjct: 161 AEADESDGSFLKF----------------NPYIAVVTNIEDDHLDHYGSQENIQKAFAQF 204

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             + + ++  A++  D+   + +   A +       +  Q      K +    +     +
Sbjct: 205 VSQ-IKEDGCAVLCYDNDRVRTI-GEATDKRVISYGIDSQDADYQAKNIIYGTDGTHFDV 262

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G+        +PG   V N+L A      +G++   +L  LEK      RFE  G  
Sbjct: 263 VYQGETIGQGHLIIPGRHNVLNSLGAIAAARELGLELPDILTSLEKFSGAKRRFETKG-K 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G  +  DYAH    ++  LK  R     R+IVVF                +A   AD 
Sbjct: 322 ADGIWVVDDYAHHPTEIQATLKAARQTHPERLIVVFQPHRYTRTQLLLDEFAVAFKDADK 381

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
            IVTD    SEDP      E +  ++       +E   ++   +          D+++  
Sbjct: 382 LIVTDIYAASEDPIPGVSGEMLADKVRETTGQQVEYLPDQPTILDHLEHEAQSGDLIMTI 441

Query: 466 GKGH 469
           G G 
Sbjct: 442 GAGD 445


>gi|253798778|ref|YP_003031779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289554056|ref|ZP_06443266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|297634746|ref|ZP_06952526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|297731735|ref|ZP_06960853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659070|ref|ZP_07815950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|253320281|gb|ACT24884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289438688|gb|EFD21181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|328458541|gb|AEB03964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 4207]
          Length = 510

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 93/514 (18%), Positives = 156/514 (30%), Gaps = 82/514 (15%)

Query: 3   LQDLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + +L      E++      I P     R++   V  DSR I  G +F+A+ G + DGH  
Sbjct: 1   MIELTVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHDH 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
                         + A       A      P +VV       ++ A  L   +  +   
Sbjct: 61  AA-----------SAVAAGAAVVLAARPVGVPAIVVP-PVAAPNVLAGVLEHDNDGSGAA 108

Query: 117 ----------------------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
                                 I+ +TG+SGK+S    +  +    G      G  +   
Sbjct: 109 VLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNEL 168

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                    T    YL   ++             A  HG      +      G   N+G 
Sbjct: 169 GHPWTVLRATRRTDYLILEMA-------------ARHHGNIAALAEIAPPSIGVVLNVGT 215

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+    +++     K  L  + +P     ++ ADD     + K       RV S    G
Sbjct: 216 AHLGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVARV-SRDNTG 273

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                        + + T+       +    + G+ QV NAL AA + +  G     V  
Sbjct: 274 DVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAA 333

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVF 388
            L     V      V T   G  +  D Y    +S+   L+ +  I            V 
Sbjct: 334 ALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVL 393

Query: 389 GCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           G   +  +       +I      LD++ + +V     RS         ++ G  G  E  
Sbjct: 394 GEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEAT 450

Query: 444 NRIEAIRTAIEMLN-------------KQDVLVV 464
               A RTA+ + +               DV++V
Sbjct: 451 ADHGADRTAVNVADGDAALALLRAELRPGDVVLV 484


>gi|291515928|emb|CBK65138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes shahii WAL 8301]
          Length = 417

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 117/344 (34%), Gaps = 45/344 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I+   IF A+ G+  DG+ F+ +A+ +GA   V           A       I
Sbjct: 14  ISTDTRRIEPDSIFFALRGDTFDGNRFVAEALEKGAAYAVSDDPQV-----AASDERQRI 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+T K L   A          ILA++G++GK++    V ++           G    
Sbjct: 69  VLVDDTLKALQDLARCHRRALGIPILAISGSNGKTTTKELVSRVLAERFEVYATRG---- 124

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L+         V + AS+ G         +   G  TN+
Sbjct: 125 ------NLNNHIGVPLTL---LAMTRDTEFGVVEMGASACGELALLASVAEPNYGILTNI 175

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++     +     K  LF+ L      A + ADD                +L+   
Sbjct: 176 GLAHLEGFGGPEGVRRGKGELFDFLAANGGHAFVPADDE---------------ILTGMA 220

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +     +  +      +   +EG            +  +N   A  +     +    +
Sbjct: 221 AERDSLADEYYSASLADGIENHLEG-----------SYNRFNIAAAVAVGRYFDVPDERI 269

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              +        R + +GT SR   +   Y    +S+   + N 
Sbjct: 270 RHAIASYVPDNNRSQRIGT-SRNTLVADCYNANPSSMRASVGNF 312


>gi|257456336|ref|ZP_05621533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446422|gb|EEV21468.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 358

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 13/237 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   + +  +    ++  +  ++ +S DSR ++ G  F A+ G   DG  FI  A+A+G
Sbjct: 19  AKSILQCLVSIEPIAVRGADVTVHSLSYDSREVREGAAFFALPGVHTDGSKFIDAAVAKG 78

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSG 125
           A  ++              +++   + V + R  ++  A+  + +  ++++ +  TGT G
Sbjct: 79  AVTVIHEKPLP------AYQAHICYVQVPDVRAAMAAAAAAFFDEPSQDLITIGVTGTEG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           K+S   F+ Q+ + +G  +      S        A     TTP  I + + L+ +   G 
Sbjct: 133 KTSTVDFIWQLLRLAGKKAGFSSTVSFSLGDEPVANPAHQTTPESITVQERLARMRDNGC 192

Query: 183 THVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  VEASSHGL     RL  ++  AG F N+ ++H+++H T + Y   K  LF  L
Sbjct: 193 EYAVVEASSHGLSPRTARLLHVRFDAGIFMNVTQEHLEFHGTFEQYRYDKANLFRAL 249


>gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
 gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
          Length = 481

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 89/483 (18%), Positives = 182/483 (37%), Gaps = 45/483 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     +++       +    +  +  V+ DSR    G  FVA  G + DG+ F  +A+
Sbjct: 1   MLSMSVRDILEATGASRVAGPCDGVVRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPE-NILAVT 121
           A+ A  ++   A       A  R    +L    D+  +FL   A      +P+  ++ VT
Sbjct: 61  ARAATVVLTGPA-PKGCAEAAERHGCALLRAEGDDGEEFLLRLAGAWRRLNPQWTVVGVT 119

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +    +         G  + +              I L   L       
Sbjct: 120 GSVGKTTTKDMLAAGLRARFRVHATAGNFNNL--------------IGLPLTLLSADPSD 165

Query: 182 VTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              V+    +H  +  RL    +      TN+G  HI    ++++   AK  +   + P 
Sbjct: 166 EVVVAEMGMNHAGELSRLAACARPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPS 225

Query: 241 ESPA-------IIYADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--Q 290
            S          + +D+ ++  +  + A  AG  VL VG +          A+ +    +
Sbjct: 226 SSAQGAVRPCLALTSDNDFAALIEDEYAAPAGVEVLHVGGRPCDDVRAGGIALDDGGLPR 285

Query: 291 VTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +S  +G        +PG   V + L+A  +C  +G+D    L+ + ++     R E V
Sbjct: 286 FELSFADGWSEPCTLGMPGRHVVSDVLLAMAICDRLGVDRHDALDRIARMPQTHMRLEVV 345

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI--- 405
               R   I   Y  + +S+   L  + ++  +GR + V G  G+       + G I   
Sbjct: 346 TAPGRPRMIDDSYNASPSSVAAALDVLCSMACTGRRVAVLGEVGELGDEAPRLHGYIGAY 405

Query: 406 -ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQD 460
            A    D+ ++   +   +      A +  G     ++  R++ ++ A+++    L + D
Sbjct: 406 AAAKPLDLLVLVGTH---DAAAMAEAALTMGFSE--DRMERVDDVQAALDLIAPVLGEDD 460

Query: 461 VLV 463
           +++
Sbjct: 461 LVL 463


>gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
 gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
          Length = 455

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 177/476 (37%), Gaps = 47/476 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  +D  E +N          E  +  +S DSR ++   +FV ++G K D H F+ Q
Sbjct: 1   MENIRIRDIVEAVN--GRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A + S   +  +          ++ V++T+K L      +  +    ++ +TG
Sbjct: 59  AFENGAAASLTSEHDTCPEGITGA-----LIRVEDTKKALQDIGRYIRSRLSLPLVGITG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +      +G  +F+            ++      PI +   +S     GV
Sbjct: 114 SVGKTTTREMIAAALS-AGYRTFK---------TPANHNSQVGVPITI-SDISEADEIGV 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  +   D  ++     TN+G  HI+   +++     K+R+ +  + K  
Sbjct: 163 --LELGMSEPGEMEVIADIARVDTAVITNIGVTHIENLGSRENILKEKLRIQDG-MKKGG 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDF 300
              +  D+   ++V  +    GC     G  G     + V   +N  +    +       
Sbjct: 220 TLFLNGDNELLRDVRAK---DGCETSFYGL-GANCSYRAVNITYNGGRPAFDMVHGAAVV 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             +  + GE  + NAL A  +     +  A   E L+       R +     +    I  
Sbjct: 276 PVVLEVMGEHNILNALAALAVADHYHVPLADAAEALKTFDGFKNRQQIYEKGN--ITIID 333

Query: 361 D-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIV 415
           D Y  + +S++  ++ + ++T   R I V     +  +        +G    +     ++
Sbjct: 334 DTYNASPDSMKAGIRVLASLTDRKRRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVI 393

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAG 466
           T           +  EI  G+ G ++        + E      ++L + D ++  G
Sbjct: 394 T--------YGALAKEIARGVEGKVKTTVFEEEQKEEMTEYLEKLLREGDAVLFKG 441


>gi|258654054|ref|YP_003203210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
 gi|258557279|gb|ACV80221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
          Length = 510

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 92/495 (18%), Positives = 167/495 (33%), Gaps = 56/495 (11%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ +++ +  P    +  ++ V  D+R I+ G +FVA+ G + DGH F     
Sbjct: 1   MIALTLAQIADEIGVPVPAGAADVLVSSVEFDTRRIRPGALFVALRGERVDGHDF----- 55

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN----------TRKFLSLFASRLYGKHP 114
                A   ++       SA + +  P+L V +                   + L  +H 
Sbjct: 56  ----AATAAAAGAVAVLGSAPVSAPLPLLQVPDRPDNAGVLDALAALARASVTALVREHG 111

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ VTG+SGK+S    +  + +         GP   I+              +   AL
Sbjct: 112 LQVVGVTGSSGKTSTKDLIAAVLRA----VPGTGPERVIA----PPESFNNELGHPYTAL 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               S     + + A   G          L  G+  N+G  H+    + +A   AK  L 
Sbjct: 164 RADESTAFLVLELSARGAGHIAALARVAPLRIGAVLNVGSAHLGEFGSVEAIAQAKSELV 223

Query: 235 EELLPK------ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           + L P          AI+ ADDA    + +    A   ++  G   +           ++
Sbjct: 224 QSLPPAGAQPLTGGVAILNADDALVAAMAE-LTAAEVVMVGTGAAAQVRATDVGQDDADR 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            + T+            + G  Q+ NAL AA +  A+G+    +   L +          
Sbjct: 283 ARFTLVTPEGSAPVTLRVVGAHQIGNALTAAAVGRAVGLGPQAIARALSQAEPASRWRME 342

Query: 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKI- 405
           V   + G  +  D Y    +S++  L ++ TI  GR    V G   +          +I 
Sbjct: 343 VTELANGVTLINDAYNANPHSMKAALHSLSTIGRGRRTWAVLGEMAELGDEATAAHDQIG 402

Query: 406 ---ALDLADIAIVTDD-------------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
                   D  +V +               PR+            G    +   +   AI
Sbjct: 403 RLVVRLGVDRLLVVEGPGAATGAAVGGRTAPRALHLGAHLEGSWGGESELVPDVDDAVAI 462

Query: 450 RTAIEMLNKQDVLVV 464
              ++ L   DV++V
Sbjct: 463 --LLDELEPGDVVLV 475


>gi|149914522|ref|ZP_01903052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811315|gb|EDM71150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
          Length = 479

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 126/352 (35%), Gaps = 30/352 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +   VS D+R ++ G +FVA+   + DGH F+ QA+ +GA A +VS      D     
Sbjct: 20  DWEATGVSIDTRTLRPGDLFVALSAAR-DGHDFVAQALDKGAAAALVSHVPPGVD----- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  P+L+VD+ +  L         +    ++A+TG+ GK+S    ++ +    G +   
Sbjct: 74  AARAPLLIVDDVQTALEAMGRAARARTQARVVAITGSVGKTSTKEMLRDVLSSHGRTHA- 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
                           +  +   +   L+ + +     V     +H G         +  
Sbjct: 133 -------------AEASYNNHWGVPLTLARMPADTQFAVIEIGMNHPGEIAPLSRMARPH 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H+   ++ +     K  +FE L  +   A+   D A S  +   A     
Sbjct: 180 VAMVTTVAPAHLAAFESLEGIAREKASIFEGL-EEGGAAVYNGDLAVSPILADTAARHAA 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324
            +LS G      H      + N   V      +    F   +PG     NA+    +  A
Sbjct: 239 HLLSFGESPAMHHRVTRITLKNACTVAEGRAWRSPVLFKIMVPGRHFAVNAMGVLAVTHA 298

Query: 325 IGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIY-----VDYAHTSNSL 369
            G+D A V+  L +     GR   E +  +     +        Y     SL
Sbjct: 299 RGLDRAKVVTSLGQWQPGSGRGARERIVLDIVDAHVVVELIDDSYNANPASL 350


>gi|260911068|ref|ZP_05917704.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634872|gb|EEX52926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 433

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 148/419 (35%), Gaps = 35/419 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   AG IF A+ G   +G+ F   A+ QG   +VV  A         ++ +   
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCAFVVVDEA------EYCVQGDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  +   L A          I+ +TGT+GK++    +  +         +     T
Sbjct: 70  ILVDNVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGE------KYNVLYT 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + +F  D  +           L       V  V + AS  G  +  ++ ++      TN+
Sbjct: 124 LGNFNNDIGVP-------KTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    + +     K  L++  + +     ++ D A +  +M  A            
Sbjct: 177 GMAHLQGFGSFEGVVKTKGELYD-FMRQSKRGKVFVD-ANNPHLMGIAEGLDLVKYGTPA 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +       KV +     +     EG  + +    L G + V N L A  + + +G+ +  
Sbjct: 235 RPDLFVSGKVVSAAPFLRFAWQREGGAWNEVQTHLVGAYNVLNMLAAISVGLYLGVSADE 294

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
               L        R +   T +    I   Y     S+ + L N   +     + + G  
Sbjct: 295 ANRALAHYVPSNNRSQLEET-AHNKLIMDAYNANPTSMSVALNNFHDMEVPHKMAILGDM 353

Query: 392 GDRDQGKRPIMGKIALDLA-----DIAIVTDDNPRSE-------DPEKIRAEIIHGIPG 438
            +           IA  L+     ++ +V  +  R+        D E++ AE+    P 
Sbjct: 354 LELGAVSESAHQAIADQLSQLALDEVWLVGPEFARTHCAFRKFNDVEEVIAELKKHRPE 412


>gi|239813922|ref|YP_002942832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
 gi|239800499|gb|ACS17566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
          Length = 471

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 97/458 (21%), Positives = 167/458 (36%), Gaps = 51/458 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +D+R +  G +FVA+ G + D + F+  A A+GA A +          +      
Sbjct: 25  IARVHTDTRTLAEGDLFVALKGERFDANEFLADAKARGAVAAIAHGGLEAAGLAG----- 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              L V ++   L    +    +    ++AVTG++GK++V   +  +             
Sbjct: 80  ---LEVPDSLAALGALGAGWRAQFDLPLIAVTGSNGKTTVTQMIAAVLVAFRGDRA---- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
            +T  +F  +  +        AK    +   G+ H    A        RL  I +     
Sbjct: 133 LATAGNFNNEIGVPLTLLRLRAKHQHAVVELGMNHPGEIA--------RLAAIARPTVAL 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRV 267
             N  R+H+++  T +A       +F   +P++  A+    D ++      AH+ A  R 
Sbjct: 185 VNNAQREHLEFMATVEAVALENGAVFS-FVPEDGTAVFPHGDEFAPLWNDMAHDGATRRC 243

Query: 268 LSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++ G ++   I L          QV I     DFD    + G   V NAL A    +A G
Sbjct: 244 MTFGEHEDADISLVAAEWQQGAWQVRIRTPLGDFDAQLHIAGRHNVVNALAATACALATG 303

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVD-YAHTSNSLEMILKNIRTITSG 382
           I    +   L     V GR +       GG    +  D Y    +S+   +  +  +   
Sbjct: 304 IPPETIARGLSAFEPVKGRSKASAVLLPGGHSLTLVDDSYNANPDSVRAAIDVLAALPGP 363

Query: 383 RIIVVFGCGG--DRDQGKRPIMGKIALD--------------LADIAIVTDDNPR-SEDP 425
           R++V+   G   +R       +G  A                 +  A    DN R   D 
Sbjct: 364 RLLVLGDMGEVGNRAPEFHAEVGDWARQRGIEAVYALGAETAHSIAAFDGGDNGRHFADI 423

Query: 426 EKIRAEIIHGIP---GFIEKGNRI---EAIRTAIEMLN 457
           E + A ++  +P     + KG+R    E +  AIE   
Sbjct: 424 EALGAAVLARLPQVGSVLVKGSRFMKMERVVQAIEQSR 461


>gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
 gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
          Length = 779

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 137/415 (33%), Gaps = 46/415 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+AIVVS+A    +       +   P L   +    L    +   G      +AV G+
Sbjct: 70  RGADAIVVSTAIPYDNVEVIAAWDLRIPKLHRSDINAALV---NAYDG------IAVAGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +      +G     + PT  +     D                   S G  
Sbjct: 121 HGKTTTTSMIGVTLDCAG-----VSPTIIVGGEVPDLGTNAKLGTGRYLVSEADESDGSF 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++      TN+  DH+D++ T +    A  R F +    +  
Sbjct: 176 LK----------------LRPHIAVVTNVEDDHMDHYGTMEKIIEA-FRTFVDQTDADGT 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-D 301
           A++  ++   +++   A    CRV+S             +    +    T    G +   
Sbjct: 219 AVLCFENEILRQI---ACETPCRVVSYAIDAEADYRAADMETHGSVISFTAFERGAEMGR 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L  +PG   V NAL    +    G++   +   L + H    RF+  G   RG  +  D
Sbjct: 276 VLLNIPGRHNVLNALACIAVARLAGVEFPEIRRALAQFHGAKRRFQTKG-KERGVWVVDD 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    +   L   R    GR+I VF                     AD+ ++TD    
Sbjct: 335 YAHHPTEIAATLAAARQTNPGRLICVFQPHRYSRTQLLREEFGTCFAAADLLLLTDVYAA 394

Query: 422 SEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P      E +  E+        +    R +      + +   D+++  G G+
Sbjct: 395 GEAPIPGVSGETLMKEVAKQTGQDAVYLPARGDLEHYLAQHVRAGDLVITMGAGN 449


>gi|311115069|ref|YP_003986290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310946563|gb|ADP39267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 597

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 109/533 (20%), Positives = 196/533 (36%), Gaps = 84/533 (15%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N ++ DSR I+   +   I GN +    ++  A   G    V   +Y+  D++  +    
Sbjct: 78  NHITYDSRDIKKNTLLF-IKGNFKP--EYLKDADKNGLTTYVAEQSYA--DYTNAVG--- 129

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L+V + RK +SL +S  +G   E +  + +TGT GK++ A F   I          + 
Sbjct: 130 --LIVTDVRKAMSLLSSEFFGNPQERLRVIGITGTKGKTTTAYFTHAILNEHSEGKAALF 187

Query: 149 P---TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                        ++ LTTP  +   + +S     G+ ++ +E SS      R+ G+   
Sbjct: 188 SSVDNCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEVSSQAYKVERVYGLHFN 247

Query: 206 AGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             +F N+  DHI    H T + Y   K ++ +         I+ AD A++  +++ A N 
Sbjct: 248 VAAFLNISPDHISPIEHPTFEDYLYCKRQIVKN----TDALILNADCAHADLILQDAQNE 303

Query: 264 GCRVLSVGY-----QGKFIHLKKVCAIHNKQQ------------------VTISVEGKDF 300
              V +         G+ I   + C+ H+                     + +S + ++ 
Sbjct: 304 YVDVTTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKYVAMPVSSDAQEH 363

Query: 301 D------------------------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                                    F   + G+F   NA  A  +  A+GI+     + L
Sbjct: 364 YVAILDNESKKNKKQFVPNYTTIDKFNLKIAGDFNYENATAAIAIANALGINENTDQKAL 423

Query: 337 EKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCG 391
             +  V    R E            VDYAH   S + ++  +          I +V G  
Sbjct: 424 HAIENVQISGRMEVFKDTKSNTVAIVDYAHNYISTKSVVDFVYDKYGNNDLRITLVTGST 483

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIE 447
           GD+   +R  + + A D  +  + T ++   ED   I   +   +     +     NR E
Sbjct: 484 GDKAVDRRKEIVQAAQDRINQFVFTQEDTNVEDEMDICKYMQSCVTNPNVESRIIINRAE 543

Query: 448 AIRTAIEMLNKQ-------DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AI  ++E   K        ++++  GKG E    V N       D  II+ + 
Sbjct: 544 AIEYSVEEARKDARENNRLNIILAIGKGDERWIKVHNKHVPYEGDSFIIKRLF 596


>gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549]
          Length = 453

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 158/417 (37%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FVAIV    DGH FIP AIA  
Sbjct: 1   MIKSLKQLAIQSGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANR 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQGL---------DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNYLGVPMTILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +       N   V I +  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRVTSNSYAVKIRIFDQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  ++N+++A    +A+G++    L++ + +    GRF     + +   I   
Sbjct: 269 YQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      +I+ +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLAEFDGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|315655249|ref|ZP_07908150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
 gi|315490504|gb|EFU80128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
          Length = 483

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 164/479 (34%), Gaps = 34/479 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L   + + P +   R      +DSR +  G +FVA+ G   DGH F+     
Sbjct: 1   MIDMTLDALREAIGLEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVAR 60

Query: 66  QGAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----- 116
           +G +  +VS       +    +A       +L V + +  L   A     +         
Sbjct: 61  RGGKVAIVSHDRTEILNQGWATADELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGT 120

Query: 117 -----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++ +TG++GK++     +Q+    G +   +   +              S  YL 
Sbjct: 121 GKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYL- 179

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                        + + AS  G   +  D   L       +G  H++ + + +A    K 
Sbjct: 180 ------------VLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKA 227

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            + E L P    AI+ ADD   + +  R  +      S                  +   
Sbjct: 228 TILENLGP-SGMAILNADDPRVEAMSGR-TSGRLMYFSTKKNTPVRITDLRLDEAARGSF 285

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +            L G   V NA+ AA +    G+  A +   L     V      +  
Sbjct: 286 LLHTPEGSAPVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVH 345

Query: 352 NSRGGRIYVD-YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            + G  +  D Y    +S+   L  I ++  + R+++V G   +  +    + G+I    
Sbjct: 346 LADGVDLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYA 405

Query: 410 AD--IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A+  I+++    P ++  E   + +        +  +   A R   E++   D+++V G
Sbjct: 406 ANLGISVLLTVGPMAKHIESAYSALKRDGESH-QVMDATAAGRLLQEIVRPGDLILVKG 463


>gi|259416006|ref|ZP_05739926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
 gi|259347445|gb|EEW59222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
          Length = 463

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 126/373 (33%), Gaps = 27/373 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  ++ +S D+R +  G +FVA+   + DGH F+ Q           + A  +      
Sbjct: 19  SDWAVDGISIDTRTLAPGDLFVALKAAR-DGHDFVAQ------ALAKGAGAALVSHIPEG 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +   +P+LVVD+ +  L         +    ++AVTG+ GK+S    +  +    G +  
Sbjct: 72  VAEGSPLLVVDDVQAALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLAPQGRTHA 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKL 204
            +               +  +   +   L+ + +     V     +H G         + 
Sbjct: 132 AV--------------ASYNNHWGVPLTLARMPADTEFAVIELGMNHPGEIAPLSRQARP 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +   H++  +        K  + E L P    A++ AD   +  +   A  AG
Sbjct: 178 HVALVTTVAAVHLEAFEDVAGIAREKAAIIEGLEP-GGVAVLNADLDETPVLRAVAEAAG 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                 G       LK      +  +  +S+ G+D        G     NA  A    +A
Sbjct: 237 IETRWFGQSADAYRLKDAELDGDITRAHLSLAGRDVTADIQSLGTHFAMNATGALASVLA 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           +G D  L L  L     V GR     V   S    +  D Y     S+   L  +    +
Sbjct: 297 LGGDLDLALAGLAGWSPVKGRGARFTVDLPSGSVTVLDDAYNANPTSMAAALTVLAATPA 356

Query: 382 -GRIIVVFGCGGD 393
            GR I       +
Sbjct: 357 TGRRIAYLADMKE 369


>gi|322691437|ref|YP_004221007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456293|dbj|BAJ66915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 517

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 98/500 (19%), Positives = 183/500 (36%), Gaps = 43/500 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +     ++ D+R +  G + +   G +     ++      G  A V  + YS    
Sbjct: 34  IASADEPFAGITYDTRKVTQGTL-LCCKG-RFK-AEYLNGIDEAGLAAYVAETEYSA--- 87

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQR 139
                +  P L+V++ RK +SL ++  YG +P+N L V G +G       + F Q +   
Sbjct: 88  ----ATAAPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGTKGKTTTSYFTQALINA 142

Query: 140 -SGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            SG  +                ++ LTTP  +   + +   +  G+ ++ +E SS     
Sbjct: 143 VSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMEYLVMEVSSQAYKV 202

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            R+ G+     +F N+  DHI    H T + Y   K ++           ++ AD  ++ 
Sbjct: 203 DRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIAN----AKSLVLGADSLHAD 258

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKD---FDFLFPLPG 308
            + + A  AG    +               +         +  +   D    D+   + G
Sbjct: 259 LLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASFHIADGDQTLGDYHLSIDG 318

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTS 366
           +F   NA  A  +  A G+      + L  +  V    R E            VDYAH  
Sbjct: 319 DFNYLNAAAAIAIAHAAGVSLDDA-DALHAIESVRIAGRMEQFRDPQSNTLAIVDYAHNY 377

Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            S+  +L  +         RI +V G  G++   +R  + + A +     I T ++  +E
Sbjct: 378 ASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAAENRIANFIFTAEDTDTE 437

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIV 475
               I  E+   I           +R  AI  AI       ++ ++L++ GKG+E     
Sbjct: 438 PFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHADRFNILLIIGKGNERWIKD 497

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D  ++  + GL
Sbjct: 498 HHKHVPFDGDDHVVERMFGL 517


>gi|291460707|ref|ZP_06600097.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416666|gb|EFE90385.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 467

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 146/411 (35%), Gaps = 42/411 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSV 129
           +     L  ++A I  + P LV         +  + L G   ++  N + ++GT GK++ 
Sbjct: 66  IEKGIELVVYTAAIHPDNPELVAAKKAGLPIISRAGLLGEIMRNYRNAINISGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I   +        PT T+    +D              +    S+     + E 
Sbjct: 126 TSMIAEILLEADWD-----PTVTVGGMMRDIGGN----------IRVGQSENFIAEACEY 170

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           ++  L  +             N+  DH+D+ +  +   ++  R F E LP+    +I  D
Sbjct: 171 TNSFLSFY------PTIEVVLNVEADHLDFFKDLEDIRHS-FRRFTEKLPENGLLVINRD 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDF-DFLFPL 306
             + +   +      CRVL+ G+     +     +  +      T+   GK+       +
Sbjct: 224 IPHYEYFTE---GLRCRVLTYGHDRDADYTANFISYDHYAHPSYTLFERGKELGPISLGV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE  +YN+L A  +  A+GI+   +   L +      RF+  G    G  I  DYAH  
Sbjct: 281 TGEHNIYNSLSAIAVGRALGIELETIRRALHRFQGTDRRFQKKG-EVCGFTIIDDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
             +   ++  +     ++ V F                 AL  AD  ++ D     E   
Sbjct: 340 QEIAATIEAAKKYPHRKLWVAFQPHTYSRTAALMDDFAGALSQADEIVLADIYAAREKNT 399

Query: 426 -----EKIRAEIIHGIPGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGH 469
                E +R  ++          +  RIE     +E L   D+L+  G G 
Sbjct: 400 VGVSSEDLRRHMLEQNTNVYYIPDFQRIE--DFLMERLQPGDLLITMGAGD 448


>gi|262037247|ref|ZP_06010729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
 gi|261748719|gb|EEY36076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
          Length = 459

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 146/396 (36%), Gaps = 53/396 (13%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             IN++S +S+      +FVAI G    G+ +I +A+ +GA A+     Y          
Sbjct: 21  TDINKISMNSKECGKNDLFVAIRG----GNNYINEALEKGAYAV-----YDNAHADIKEE 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRS 140
                  V+++ +FL  FA +        ++ +TG++GK++V     Q+        +  
Sbjct: 72  YKNKTFFVNDSVEFLQKFAKKWREALDVKVIGITGSNGKTTVKDITYQLLSSKYKGKKTE 131

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G  +  IG   T+    +D++                         +  S  G  +    
Sbjct: 132 GNYNNHIGLPFTLLRLEKDDKFIILE--------------------MGMSGFGEIELLGK 171

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+G  H+++  T++  F AK  L   L   +   II  DD Y K + + +
Sbjct: 172 ISNPDISIITNIGESHLEFLHTKENVFKAKTEL---LPYTKEVLIINGDDDYLKNINESS 228

Query: 261 HNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQV 312
                  R  S   +    +   +         ++    K+ +      F   + GE  +
Sbjct: 229 LKTIKVLRKDSKNIEKSNFYYGNINFDEKGSSFSLEYSEKENEKFQKKLFKTNILGEHNI 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT--SNSLE 370
            N  +A  +    GI+   + E ++ + +   RF+      +G  IY++ A+     S++
Sbjct: 289 LNLTMAIAVAKQFGIEDKDIEETVKNIKLTDMRFQI---TEKGNTIYINDAYNASPASMK 345

Query: 371 MILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405
             L+    I +    I V G   +  + +  +   I
Sbjct: 346 KSLETFSEIYNDRMKIAVLGDMLELGENELELHSDI 381


>gi|225077134|ref|ZP_03720333.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
 gi|224951545|gb|EEG32754.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
          Length = 455

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 145/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR IQ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIQEGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCAALKGALKVDDTLAALQTLAKAWRDNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S+   +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMRAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDKG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|332187087|ref|ZP_08388827.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
 gi|332012787|gb|EGI54852.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
          Length = 471

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 98/455 (21%), Positives = 164/455 (36%), Gaps = 62/455 (13%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGA------EAIVVSSAYSLQDFSATIRSNTPI 92
            +  G++   + G +E G   I  AI  GA        +V S+A +  +          I
Sbjct: 39  DVAEGYV---VQGLREKG---IAVAIGHGADNLGDAAVVVTSTAITRSNPEVEAALERRI 92

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            VV        L          ++ +AV GT GK++  S V  +    G+    I     
Sbjct: 93  PVVRRAEMLAELMRL-------KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVING-GI 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           I+S+  + RL     +                  VEA        RLDG        TN+
Sbjct: 145 INSYGSNARLGASDWM-----------------VVEADESDGSFLRLDGT---IAVVTNI 184

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             +H+D++ +     +A +  F E +P    A++  D    + ++ R  +   RV++ G+
Sbjct: 185 DPEHLDHYGSFDRVKDAFVE-FVENVPFYGAALLCLDHPEVQNILPRVRDR--RVVTYGF 241

Query: 273 QG-KFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAI 325
                +    V  I    +    +  +D           P+PG   V NAL A G+ + +
Sbjct: 242 SAQADVRGVNVTPIPGGNRFEAIIRHRDGSSRSIEGIELPMPGRHNVQNALAAIGVALEL 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           GID A + +   +   V  RF  VG    +     +  DY H    +  +L   R    G
Sbjct: 302 GIDDATIQQGFGQFGGVKRRFTKVGEIAVDGGVATVIDDYGHHPVEIRAVLAAAREGARG 361

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           R+I V         G      + A + AD  +VT      E P +   +    + G   +
Sbjct: 362 RVIAVVQPHRFTRLGNLMEEFQTAFNDADRVLVTPVYAAGEQPIEGV-DASALVEGLKRR 420

Query: 443 GNRIEA-IRTAIEML-------NKQDVLVVAGKGH 469
           G+R  A +  A  +           D++V  G G 
Sbjct: 421 GHRSTATVADADALAEDLSGSIRADDMIVCLGAGD 455


>gi|255068197|ref|ZP_05320052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
 gi|255047539|gb|EET43003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
          Length = 455

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 148/421 (35%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P     + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLNLPTPSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A    G     
Sbjct: 55  ED------------VLAAGAAAVVVSREDCAALDGALKVDDTLAALQTLAKAWRGNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +            +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLR---HRFGDDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L  ++  A+I  +D ++      +     R  + G     +H + +       +  + 
Sbjct: 212 QGL-GEDGLALIPCEDEHAAMFQTTSQGHQQR--TFGVDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLILDDVAEGLKGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|158522796|ref|YP_001530666.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
 gi|229486488|sp|A8ZXW2|MURC_DESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158511622|gb|ABW68589.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
          Length = 457

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 148/415 (35%), Gaps = 47/415 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I V+        +   +         + + G  GK
Sbjct: 64  GADVVVVSSAIAADNPEVAAAREAGIPVIPRAEMLAEILRLKYS-------IVIAGAHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           +S  S V  +  + G+    +  G   +I +                   + +   G   
Sbjct: 117 TSTTSMVASVLGQGGMDPTVVIGGKLKSIGT-------------------NAVLGHGDYI 157

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S G                TN+ R+H+D++    A   + +  F + +P    A
Sbjct: 158 VAEADESDGSFLK----FSPSIAVVTNIDREHLDFYPDLAAISKSFLE-FLDRIPFYGVA 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           ++  D+   + ++        R ++ G      +  + +  I+ K + ++    ++    
Sbjct: 213 VVCLDNEPLQALVPLIKK---RFITYGTSNQADLQARHITPINGKVRFSVVWRQEELGTI 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NAL A  + + +G+  A++ E LE +  V  R E  G    G  +  DY
Sbjct: 270 DLGVPGFHNVRNALAAVAVGLELGLAFAVIKEALETMAGVQRRLEKKGETG-GVIVVDDY 328

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H    ++  L+ +R      R++VVF                 A    D  +V      
Sbjct: 329 GHHPTEIKATLQGVRQHWEDRRVVVVFQPHRYSRTKALFDDFTRAFYQCDELVVLPIYAA 388

Query: 422 SEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P      E +   I  HG  G      R EA+    E+L K D+L+  G G 
Sbjct: 389 GEHPIDGVDGESVAEGIRAHGHKGVRYVEGRAEAVAYLKEILQKGDILLTLGAGD 443


>gi|222053882|ref|YP_002536244.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
 gi|254766004|sp|B9M173|MURC_GEOSF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221563171|gb|ACM19143.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
          Length = 458

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 135/411 (32%), Gaps = 42/411 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA    +          I V+        L   +         +A+ GT GK+
Sbjct: 65  ADVVVISSAVHDDNPEVIEARERLIPVIPRAEMLAELMRMKYG-------IAIAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  I    G     I PT  I                          QG   V+ 
Sbjct: 118 TTTSMVATILATGG-----IDPTIVIGGRLNSIGTNAR------------LGQGKFLVAE 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S G        +       TN+  DH+D++   +   +  +  F   +P    A++ 
Sbjct: 161 ADESDGSFLK----LSPTIAVVTNIDADHLDFYSGIEEIKDTFVE-FINKIPFYGLAVLC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            D+    +++        R  + G          ++             +G+   +  F 
Sbjct: 216 LDNGNVADIIPLVKK---RFTTYGLTAQADFRATEIRHEGFTTSFVAHYKGQKLGEISFN 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL    +   + +    +    +    V  RF+ V     G  +  DY H 
Sbjct: 273 MPGAHNVLNALATIAVATELDMRFEDIQAGFKSFGGVGRRFQ-VKGEVNGIMVVDDYGHH 331

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              ++  L   +     R++VVF         +       A   ADI I+TD  P  E P
Sbjct: 332 PTEIKATLAAAKGGWDRRLVVVFQPHRYTRTKELFEEFVKAFYDADILILTDIYPAGEQP 391

Query: 426 ------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 E + A I  HG        +R +     + ++ + D+++  G G+
Sbjct: 392 IEGVTAEALSARIKRHGQREVTFVADRNKVCDHLLSIVKEGDIVLTLGAGN 442


>gi|288800647|ref|ZP_06406104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288332108|gb|EFC70589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 442

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/454 (17%), Positives = 158/454 (34%), Gaps = 57/454 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L + +Y+ F E                  E+++D+R    G IF A+ G   +G+ F 
Sbjct: 1   MTLIEKLYQLFLEC----------------KEITTDTRDCPKGSIFFALKGANFNGNSFA 44

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ QG    VV  +      +  +  N   ++VDN    L   A+         I+ +
Sbjct: 45  HKALEQGCAYAVVDES------TPDMIGNEQYIIVDNVLTTLQQLANHHRKALDTTIIGI 98

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++    +  +  +      +     T+ +   D  +           L      
Sbjct: 99  TGTNGKTTTKELLATVLAQ------KYNVLYTLGNLNNDIGVP-------KTLLRLNKEH 145

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + + AS  G  +  +D ++      TN+GR H+    +       K  L++ +   
Sbjct: 146 NMAVIEMGASHPGDIKTLVDIVEPNYALITNVGRAHLQGFGSFDGVKRTKAELYDFMEAH 205

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD- 299
                I+  +A S ++++           + Y           A        +S   K+ 
Sbjct: 206 NRANNIFI-NAESADLLEMFSTHCKSESYIAYSPTNSVEASFVAEITANNPFVSFRWKET 264

Query: 300 -------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +    L G + + N L A  +   +G++S  + + LE       R + + T 
Sbjct: 265 NNESDTWHNVGTHLIGAYNIANMLAAVSIGRTMGVESKDICKALENYIPSNNRSQLIKT- 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LD 408
           +    I   Y     S++  L+N   +   R +V+ G   +  +       KI     L 
Sbjct: 324 AHNTIIMDAYNANPTSMKAALENFIKMDVERKMVILGDMKELGEVSNCEHQKICDLLNLA 383

Query: 409 LADIAIVTD--------DNPRSEDPEKIRAEIIH 434
             D   +          D    E+ E++ AE+  
Sbjct: 384 QFDCVWLVGKEFMATQNDFKSFENVEQVIAELQQ 417


>gi|206602131|gb|EDZ38613.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 464

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 85/414 (20%), Positives = 147/414 (35%), Gaps = 43/414 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +A+V+S+A S ++          I VV    + LS       G      +AV G+ GK+
Sbjct: 66  VDAVVISTAISPENPELLEARRLGIPVVHRG-EALSGIMRGFRG------VAVAGSHGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +    GL    +     +  F  +               + +  + +     
Sbjct: 119 TTTSMIAHVLAHGGLDPTCV-VGGRVPGFGGN---------------ARVGKKNIFVAEA 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           + S     +     I       TN+ ++H+DY+Q+      A    F   +P E  A++ 
Sbjct: 163 DESDGSFLK-----ISPHVAVVTNIDQEHLDYYQSFDQ-LKAAFERFLASVPPEGLAVVC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DD     ++   +       + G+     +    V A       ++ + GKD   F   
Sbjct: 217 LDDPELSNILPSLNAPH---WTYGFNPSADVVGSDVSAEGLSTSFSVRLRGKDIGSFSLN 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL    +    G+++  V E LE+   V  RF  VG    G RI  DY H 
Sbjct: 274 IPGVHNVLNALATIAVGHHFGLEAECVREALERFRGVGRRFTQVGEEG-GIRIVDDYGHH 332

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              + + L   R      R++V F                 A  LAD+ ++ +     E 
Sbjct: 333 PTEIGVTLAAARQAYPDRRLVVAFQPHRFSRTRDLLSRFASAFQLADVLVLGEIYGAGES 392

Query: 425 P------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P       ++  EI            ++ E I   + +L   D+L+  G G  T
Sbjct: 393 PIAGITGRRLFDEIRVSFENEAYFAADQSEMIARLMTILKPGDLLMTMGAGDVT 446


>gi|217963816|ref|YP_002349494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333086|gb|ACK38880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 196

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 102/188 (54%), Gaps = 5/188 (2%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G F VYN L A     A+ I     +  LE +  V GRFE V    +   + VDYAHT
Sbjct: 1   MIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNA-GQAFPVIVDYAHT 59

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D +   I T DNPRSE+P
Sbjct: 60  PDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNPIFTSDNPRSENP 119

Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE   ++ + E   
Sbjct: 120 HAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD-EVID 178

Query: 483 SVDCDIIR 490
             D    R
Sbjct: 179 FDDRVEAR 186


>gi|86132113|ref|ZP_01050709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
 gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
          Length = 424

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 124/373 (33%), Gaps = 33/373 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V +D+R ++   I+ A+ G   +G+ F  QA+  GA   +V     + D S       
Sbjct: 14  NGVCTDTRSLEKNQIYFALKGENFNGNKFAQQALKSGASLAIVDEKEYVTDRS------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+    L   A+         I+ +TG++GK++    +  +           G  
Sbjct: 67  --VLVDDVLSTLQQLANYHRNYLDIPIIGITGSNGKTTTKELIYAVLSEQYNVIATKG-- 122

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   L+  +S  +  V + A+  G  +   +  +   G  T
Sbjct: 123 --------NLNNHIGVPLTL---LTMDASTEIGIVEMGANHQGEIKMLCEIAQPNFGYIT 171

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L+  L        I   D      ++   +A     + 
Sbjct: 172 NFGKAHLEGFGGFEGVIKGKSELYNYLRENNELVFINDQDE-----IQVRQSANIVSKTF 226

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          V        + I+V   +      L G +   N  VA  +     +   
Sbjct: 227 GSSQSEY---PVYLEDGSGNLKITV--GETTITSNLIGTYNFSNIAVAMAMGNHFDVPLT 281

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   +EK      R + +  ++    I   Y     S+   LKN++   +  I  +   
Sbjct: 282 HIKNGIEKYVPSNNRSQIIDKDTYKI-ILDAYNANPTSMAAALKNLQATGTNAIAFIGDM 340

Query: 391 GGDRDQGKRPIMG 403
               +  K     
Sbjct: 341 FEVGETSKAEHQA 353


>gi|119961244|ref|YP_947466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
 gi|119948103|gb|ABM07014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
          Length = 496

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 151/476 (31%), Gaps = 39/476 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+ +          +     V +DSR    G ++VA  G   DGH F+  A  
Sbjct: 1   MIALTAAEIADITHGRLTGDPDIVPTSVVTDSRESTHGSLYVAKPGEHADGHDFVDAAFE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--------- 116
           +GA  ++     +  D         P +VV++    +   A+    +             
Sbjct: 61  RGAVLVLGEREVTDADGRPF-----PAVVVEDAVLAMGALAAESVRRIRAERASRGEDFT 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++    +  +   +G +    G  +              +  +L      
Sbjct: 116 VIGITGSAGKTTTKDLLAGVLSTAGATVAPQGSYNGEVGVPLTVFAADATTRFL------ 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + + A+  G  ++  + +K   G    +G  H       +     K  L E 
Sbjct: 170 -------VIEMGATGLGHIKYLAEMVKPDIGVVLVVGTAHAGEFGGVENIAKTKGELVEA 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTI 293
           L  +   A+I  DD     +  R         S     + +  + V           + +
Sbjct: 223 L-SEHGTAVINLDDGRVAAMRARTKAKVLGFTSSPATTEEVEARNVVVNGQGFPDFDLVL 281

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G   +    L G   V N L AA    A GI +A +   L                +
Sbjct: 282 PDGGPAVEVRSRLIGGHHVTNLLAAAAAAFAAGIPAADIATSLSSQSAASRWRMERTERA 341

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  I  D Y     S+   L+++  +  GR    V G   +  +        +   +  
Sbjct: 342 DGVTIINDAYNANPESMRAALRSLADLGQGRRTWAVLGAMLELGEDSIREHTAVGTQVVR 401

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDVLV 463
           + I        E      + I  G   + ++ +  E +  A E+L       D+++
Sbjct: 402 LNISRLVVVGREARALYISAIQEG--SWGDECSFTETVEEAYELLQRELEPGDLVL 455


>gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
 gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
          Length = 455

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 79/477 (16%), Positives = 171/477 (35%), Gaps = 49/477 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  +D  E +N          E  +  +S DSR ++   +FV ++G K D H F+ Q
Sbjct: 1   MENIRIRDIVEAVN--GRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A + S   +  +          ++ V++T+K L      +  +    ++ +TG
Sbjct: 59  AFENGAAASLTSEHDTCPEGITGA-----LIRVEDTKKALQDIGRYIRSRLSLPLVGITG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QG 181
           + GK++    +                                S + +   +S +S    
Sbjct: 114 SVGKTTTREMIAAALSA--------------GYRTFKTPANHNSQVGVPITISDISDSDE 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  S  G  +   D  ++     TN+G  HI+   +++     K+R+ +  + K 
Sbjct: 160 IGVLELGMSEPGEMEVIADIARVDTAVITNIGVTHIENLGSRENILKEKLRIQDG-MKKG 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKD 299
               +  D+   ++V  +    GC     G  G     + V   +N  +    +      
Sbjct: 219 GTLFLNGDNELLRDVRAK---DGCETSFYGL-GANCSYRAVNITYNGGRPAFDMVHGAAV 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              +  + GE  + NAL A  +     +  A   E L+       R +     +    I 
Sbjct: 275 VPVVLEVMGEHNILNALAALAVADHYHVPLADAAEALKTFDGFKNRQQIYEKGN--ITII 332

Query: 360 VD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
            D Y  + +S++  ++ + ++T   R I V     +  +        +G    +     +
Sbjct: 333 DDTYNASPDSMKAGIRVLASLTDRKRRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEV 392

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAG 466
           +T           +  EI  G+ G ++        + E      ++L + D ++  G
Sbjct: 393 IT--------YGALAKEIARGVEGKVKTTVFEEEQKEEMTEYLEKLLREGDAVLFKG 441


>gi|296120948|ref|YP_003628726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296013288|gb|ADG66527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 480

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 93/462 (20%), Positives = 180/462 (38%), Gaps = 50/462 (10%)

Query: 22  PMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            +   E+K +  VS DSR ++ G +F+A+   + DGHLF+  A   GA   ++   +  +
Sbjct: 23  TVAAAEKKFSGRVSIDSRKLKEGDLFLALSTGQRDGHLFLSDAAKAGAAFAIIERHFEAE 82

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              A+++ + P +VV ++   L L A+    +    ++ +TG+ GK+S  S + ++ Q  
Sbjct: 83  F--ASLKLSMPAVVVADSVLALQLLAASHRDEFDGLVVGITGSVGKTSTRSMLYEVLQA- 139

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                        S             + L+      +      + + A   G      +
Sbjct: 140 -----------RYSGRQSPANFNNTLGLPLSILELECTRDEFAVLEMGAGQRGDIARLCE 188

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +   G  T++G  H+    T  +   +K  LFE L P+   A     D ++  +  +A
Sbjct: 189 IAQPEMGVITSIGLAHLATFGTPLSVAESKAELFESL-PENGVAFFPGHDPFALVLKDKA 247

Query: 261 HNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           H   CR ++VG        +++V A+ +  +  +  +G+D+           V NA +A 
Sbjct: 248 H---CRTVTVGEDTVNDWTIQQVRAVRDGYRFVM--DGQDYFIRTV--ARHFVQNAGLAI 300

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            +   +GI +A + + L K   V GR   +   S    I  D Y  + +++   L+ +  
Sbjct: 301 AVGREVGISNAEIADQLAKWQPVSGRCSLIPHPSL--TILDDCYNASPSAMAAALRTLEE 358

Query: 379 ITSG---RIIVVFGCGGDRDQGKRPIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +      R I V G   +  +         G++A  L+   I+              A++
Sbjct: 359 LGEREETRTIAVLGDMAELGEISEREHRRVGQLAGGLSIDFIL---------AVGQHADL 409

Query: 433 IHGIPGFIEKGNRIEAIRTAIEML--------NKQDVLVVAG 466
           I              A+   +EM          + DV++V G
Sbjct: 410 IAKAAKATNLSLHRLAVARDVEMAWMLLECWIEEGDVILVKG 451


>gi|320352822|ref|YP_004194161.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121324|gb|ADW16870.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
          Length = 461

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 167/476 (35%), Gaps = 55/476 (11%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            EL+  L    +   + ++ +++   R ++       + G    GH     A   GA+ +
Sbjct: 22  AELLLSLGYR-VSGSDLRVTDIT---RRLEH------LGGVIHQGHD---AAWVAGADVV 68

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V S+A +  +          + VV        L   + YG      +AV G+ GK+S  S
Sbjct: 69  VTSTAIAADNPEVVAAKEAHVPVVQRAEMLAELMRLKKYG------IAVAGSHGKTSTTS 122

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V  I   +GL      PT  +                          +G   V+    S
Sbjct: 123 MVAAILAEAGLD-----PTVVVGGKVHGLGSNAR------------LGEGEFLVAEADES 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G        +  +    TN+  +H+DY++      +  +  F   LP    A++  D+ 
Sbjct: 166 DGSFLK----LSPVIEVVTNIDLEHLDYYRDIDHIKDMFLE-FINRLPFYGVAVVCIDND 220

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +  +++ R          +  Q     +K +      Q    S + +        PG+  
Sbjct: 221 HIAQLLPRIQKRIA-TYGLTEQADLQAVKIISGNGTSQYTVRSRKEELGVIRLNRPGKHL 279

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +YN+L A  + + + ID +++   LE    V  R +  G  + G  +  DY H    +  
Sbjct: 280 IYNSLAAVSVGLELEIDFSVIARALENFQGVQRRLQIKGEAA-GVLVVDDYGHHPTEIRA 338

Query: 372 ILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----- 425
            L  +R     R +VV F                 A   AD+ ++TD     E P     
Sbjct: 339 TLDAVREGWPDRRVVVAFQPHRYSRTKGLFAEFTTAFRRADVLVLTDIYAAGESPIEGVT 398

Query: 426 -EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            E+++  I   G          +E  +  + +L   D+L+  G G+    IV  GE
Sbjct: 399 SERLQEAIKQRGQRQAHFIPQLVEQPQVLMPLLQPGDLLLTLGAGN----IVRAGE 450


>gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
 gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
          Length = 500

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 155/466 (33%), Gaps = 67/466 (14%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  E +  L+        +   ++ +D+R I+ G IF+AI G+  DGH ++  A  +GA 
Sbjct: 10  NLTEALKDLNPTFHSDFTQTSKKIITDTRKIEQGDIFLAIQGDNFDGHDYVKTAKDKGAV 69

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSS 128
             +VS A         + S+ P LVV +T+  L    +    +HP   ++A+TG+SGK++
Sbjct: 70  LAIVSRA---------VESDLPQLVVTDTKLALGKLGAYRRDQHPNLKVVAITGSSGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  I  R            T  +   D  +              +   G  HV   
Sbjct: 121 AKEMLGSILNRIAP------TLITRGNLNNDLGVPMMLLELTDAHRYAVMELGANHVGEI 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A +  L       +K       N+G  H+     +      K  +++ L      AI+  
Sbjct: 175 AYTTQL-------VKPDVACVLNIGTAHLGEFGGRDNIAKTKSEIYQGL-SDAGTAIVPF 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ--------------------------------GKF 276
            D Y   ++  A      +L+ G +                                   
Sbjct: 227 GDDYFDTLLNNAQQFTQNILTFGERDVSLADAGVDMQQAKEIGLTDEDTVLLMGDVFADD 286

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           + +             I  E +  +      GE  + NAL AA    A+G+    + + L
Sbjct: 287 VEVGNTSTFSLNFNFEID-EIESQNVSLNFAGEHNISNALAAAACAQALGLSIDDIAKGL 345

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD- 395
           +      GR  F+        I   Y    +++    + + +  +  ++V+   G   D 
Sbjct: 346 DAAKPAKGRLNFIEFGKH-TLIDDTYNANPSAVLAATQVLVSQGAPTMLVLGDIGELGDA 404

Query: 396 --QGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIRAEIIHGIPG 438
             +  R +   IA        VT      E  P  +      G+  
Sbjct: 405 AQEEHRKLGEAIAASG-----VTVLYTVGELTPVTVAQAQASGMQA 445


>gi|298252074|ref|ZP_06975877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546666|gb|EFH80534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 476

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 94/455 (20%), Positives = 158/455 (34%), Gaps = 48/455 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP--- 91
            DSR  +   +FVAI G + DGH FIP           ++ A        T+  + P   
Sbjct: 34  HDSRQYERDDLFVAITGARVDGHRFIPA----------IARAGGAGALCTTLSEDVPAGF 83

Query: 92  -ILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             LVV +  K L   A     + PE + + +TG+SGK++    +  +             
Sbjct: 84  LQLVVPDVVKALQATARVRVQRQPETLKIGITGSSGKTTTKEAIAAVL------------ 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGS 208
              ++   +          Y    L   +      + + A   G  +   + I       
Sbjct: 132 -GRVAPTLKTYASYNNELGYPLTLLRLEAEHRYAVLEMGAEWVGELRGLCETIACPDWSV 190

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G  H+ +  +      AK  L  ++L  E  A +  DD   + + ++   A     
Sbjct: 191 ITTVGAAHLKHFGSLANVAIAKSELV-QVLSPEGIAFLNYDDPVVRAMKEKTR-ARVIYY 248

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G       L          + T+ +E +D      LPG   +  AL AA +  A  I 
Sbjct: 249 GQGDGAAVRALHVEERGLLGSRFTLRIEDEDVPVQLRLPGTHGITTALAAAAVGSAANIP 308

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-----NSLEMILKNIRTITSGR 383
              + E LE L  V GR    G     G   +D  + +      ++   ++       G+
Sbjct: 309 LESIRESLEALSPVQGRGVVKGGAGPNGSTLIDDTYNAIRHSIIAMAQAMQATTIAPQGK 368

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLA---DIAIVTDDNPRSEDPEKI-----RAEIIHG 435
             VV G   ++ +  R       L LA   D  +V  DN R      +     R  I H 
Sbjct: 369 RWVVLGELFEQGEHTRDEHLASGLGLAGKVDYLVVLGDNARYYMEGALQAGMPRKAIYHF 428

Query: 436 IPGFIEKGNRIE---AIRTAI-EMLNKQDVLVVAG 466
                +  +  E   AI + + E +   D+L++ G
Sbjct: 429 SVDTTKSTDVEEGKRAIASLLKEKVTPDDLLLIKG 463


>gi|172040889|ref|YP_001800603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852193|emb|CAQ05169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 500

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 96/489 (19%), Positives = 156/489 (31%), Gaps = 60/489 (12%)

Query: 15  INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           I    +      E  +   V  DSR +  G IF+A+ G   DGH ++  A  QGA   +V
Sbjct: 12  ITGGELIDGAAAETIVAGPVEFDSRKVAPGSIFMALPGATVDGHDYVAAAGEQGAALAIV 71

Query: 74  SSAYSLQDFSATIRS-----NTPILVVDNTR--KFLSLFASRLYGKHPENILA------- 119
                     A         +   +   +        L A     +H  ++LA       
Sbjct: 72  GRPVGYPALLAPASERAEGTDNSAVFGADEEGYGAAVLAAVDKLARHNTDVLADEEGMVV 131

Query: 120 --VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             VTG++GK+S    +  +    G +    G  +            +    +L    S +
Sbjct: 132 VGVTGSAGKTSTKDLIGALLGDLGETVAPPGSFNNEIGLPYTALRASRGTKFLV---SEM 188

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S++GV H            H         G   N+G  H+    +++A   AK  L E L
Sbjct: 189 SARGVGH----------IAHLTTVTPPKIGVELNVGSAHLGEFGSREAIAQAKGELVEAL 238

Query: 238 --LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHN 287
                   AI+ ADD     V+   H    RV++         G +  +           
Sbjct: 239 PAAEDGGIAILNADDD---AVIAMRHRTRARVVTFALDERSKTGERADYWASDIRLDEVA 295

Query: 288 KQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +    +    G+  D    + G  QV NAL AA + +  G+  A V   L          
Sbjct: 296 RASFRLHHPYGEPVDIRLGVFGAHQVSNALAAAAVAVESGMLPASVARVLGNHVAASANR 355

Query: 347 EFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGCGGDRDQGKRPI 401
             V T   G  I  D Y     S+   +  +     GR       V G  G+  +     
Sbjct: 356 MDVRTRRDGATIINDSYNANPESMRAGIDALAYTAGGRPEASSWAVLGQMGELGEESAEE 415

Query: 402 MGK----IALDLADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
             +    +     D A++  T  N R      I               +   A+    + 
Sbjct: 416 HTELGKFLGTRGIDHAVIVGTGVNQR-----AIADAAREHGVDTRSVEDVDAAVNFVDQH 470

Query: 456 LNKQDVLVV 464
           +  +DV++V
Sbjct: 471 VKPKDVVLV 479


>gi|125975108|ref|YP_001039018.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|256003237|ref|ZP_05428229.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281418473|ref|ZP_06249492.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|189029009|sp|A3DIP6|MURC_CLOTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125715333|gb|ABN53825.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|255992928|gb|EEU03018.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281407557|gb|EFB37816.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|316939274|gb|ADU73308.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           1313]
          Length = 469

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 143/410 (34%), Gaps = 43/410 (10%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVAS 131
               L  ++A ++S+ P L    +    +L  + L G+  +     +AV+GT GK++  S
Sbjct: 70  KDADLVVYTAAVKSDNPELAKAKSLGIPTLDRATLLGEIMKKYPFSVAVSGTHGKTTTTS 129

Query: 132 FVQQIC--QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  I        +    G    I    +          ++A+A  Y+ S    H     
Sbjct: 130 MISLIMLKSALDPTIHIGGELDAIGGNTRIGSNKY----FVAEACEYVESFLKFH----- 180

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  DH+DY +  +   NA ++ F  L+P+    +  AD
Sbjct: 181 --------------PYLAVVLNIEADHLDYFKDIEHIKNAFLK-FIRLVPENGYVVACAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFP 305
           D   + V+    +  C +++ G   K           N+        +    +  +    
Sbjct: 226 D---QNVLSILKDVHCNIITFGLNSKNAMWTAEDISFNENGFAAFTVLKDNERITNIQLK 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NAL +   C A+G     + + LE    +  RFE  G  +   ++  DYAH 
Sbjct: 283 VPGIHNISNALASIAACYALGCSIENIKKGLESYTGIHRRFELKGIENN-IKVVDDYAHH 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-D 424
            + ++  LK  R+    RI  VF                 A    D  I+TD     E D
Sbjct: 342 PSEIKATLKAARSGNYPRIWTVFQPHTYTRTKFLLDEFSKAFKDTDKVIITDIYSAREKD 401

Query: 425 PEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             +I       +I       I   +    +    +  +  D+++  G G 
Sbjct: 402 TGEIHSRILAEKIRENGQDAIYLPDFEGIVEYLKKNASPGDLIITMGAGD 451


>gi|294674906|ref|YP_003575522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
 gi|294471729|gb|ADE81118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
          Length = 478

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 162/451 (35%), Gaps = 53/451 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF+A+ G   +G+ F  QA+ +G    +V            + ++  I
Sbjct: 51  ITTDSRDCPEGSIFLALKGESFNGNKFALQALEKGCAYAIVDED---------VANDPRI 101

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + VDN  +     A     +    ++ +TGT+GK++    +  +  +      +     T
Sbjct: 102 IKVDNCLQTFKDLAREHRRQFDIPVIGITGTNGKTTTKELIAAVLSQ------KYNVLYT 155

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSFTN 211
             +F  D          + K L  L+ +    V    +SH  D   L        G  TN
Sbjct: 156 QGNFNNDV--------GVPKTLFRLNKEHEIAVIEMGASHPGDIKTLAETAEPTCGLITN 207

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +GR H+    + +     K  L++ L   ++S   I AD+ +  + +           S 
Sbjct: 208 VGRAHLQGFGSFEGVIKTKCELYDFLRSREDSLIFINADNEHLIDQISDDEEMWLSPYST 267

Query: 271 GYQGKFIHLKK--------VCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAA 319
               ++  +          +     +  + +  EG+          L G + + N L A 
Sbjct: 268 DPDNQYSCISGEVLECNPFLKFRWREPLMVLEEEGRSTKWHKVQTKLIGSYNIDNLLAAI 327

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + I  G+D   ++  LE       R +   T      I   Y    +S++  L+N + +
Sbjct: 328 AVGINFGVDRKKIVAALEAYEPSNNRSQMTVTEKNH-LIVDAYNANPSSMQAALENFKIM 386

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK---IRAEIIHGI 436
            +   + + G            +G+++ +     +   D  ++ D +    +  E     
Sbjct: 387 QADNKMAILGAMR--------ELGEVSAEEHQHVV---DYLKTSDIKTVWLVGEEFEDTQ 435

Query: 437 PGFIEKGNRIEAIRTAIEMLNK-QDVLVVAG 466
             F +  +  E ++ AI         +++ G
Sbjct: 436 CDFRKFKDVEE-VKAAIAAEQPTGHYILIKG 465


>gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
          Length = 818

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 147/395 (37%), Gaps = 25/395 (6%)

Query: 23  MQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           +Q+ E +I  +  DSR I      +F AI G   DGH F+  A   G  + VV+    L 
Sbjct: 18  LQFYEAQIEHLLLDSRQIIFAERSLFFAIKGTHHDGHQFLSAAYQAGVRSFVVTKVPELS 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            F          L+V+N  + L   A+    + P  ++ +TG++GK++V  ++ Q+    
Sbjct: 78  QFPEA-----NFLLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKTTVKEWLFQLL--- 129

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
               + I      S  + ++++  P  ++  +A   L            S  G   +  +
Sbjct: 130 -YPHYAI----IRSPRSFNSQIGVPLSVWGIQAQHELGIFEA-----GISRKGEMGNLAN 179

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            I+   G FT LG  H +   ++      K+ LF E+       I   DDA     +K  
Sbjct: 180 IIQAKIGIFTMLGEAHNEGFSSKAEKLREKLLLFAEV----DLLIYRRDDATVHRAIKDL 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                      +    +++ K     N   +    +  +     P      + NA+    
Sbjct: 236 GRKTLAWSLDQHPNADLYVFKTETFLNHTHLEGRYQSSEQRIALPFTDHASIENAIHCWA 295

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + + +G+ S  + E + +L  V  R E +   +    I   Y    +SL + L+ +R   
Sbjct: 296 VLLHLGLKSEEIAERMAQLEPVAMRMELLDGRNNCLIINDTYNADLSSLRLGLQWMRQHE 355

Query: 381 SG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G    +V             +  K+A  + +  +
Sbjct: 356 HGRNRSLVLSEILQSGSSDEKLYRKVAQLIQEHQV 390


>gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
 gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
          Length = 896

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 147/396 (37%), Gaps = 28/396 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           +       R+  I  + +DSR +      +F A+  ++ DG  FI     +G    VV  
Sbjct: 84  IGAHRYGNRDANIGFLLTDSRSLCFAEETLFFALKTDRNDGQHFIGDLYRRGVFNFVVEH 143

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              L D   T+  +   L V N    L   A R   +    ++ +TG++GK+ V  ++ Q
Sbjct: 144 ---LPDNYDTLYPDVNFLKVVNPLGALQRLAERHRDEFDIPVVGITGSNGKTMVKEWLYQ 200

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +               T S  + ++++  P  ++L   L+      +       S  G  
Sbjct: 201 LLSPQ--------MVVTRSPRSYNSQIGVPLSVWLMNELTQ-----IGVFEAGISMPGEM 247

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 I+   G  T +G  H +   + +   + K++LF          I  ADD     
Sbjct: 248 ASLRSIIQPTIGVLTGIGTAHQENFASMEEKCSEKLKLF----HDSEAVIYNADDDLIAR 303

Query: 256 VMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            M+++   G R+  S   +   + +K +    N   VT    GK+  +  P      V N
Sbjct: 304 CMEQSGYKGRRMGWSQKDRNAPLFVKTIEKKENTTTVTYVYNGKEGQYSIPFIDSASVVN 363

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           ++    + + +G+ +  +   +++L  V  R E V T   G  +  D Y     SL++ L
Sbjct: 364 SITCMAVSLYLGLSADDLDRRMQRLEPVAMRLE-VKTGQHGCTLINDSYNSDVKSLDIAL 422

Query: 374 KNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             +         R  ++        +  R +  +++
Sbjct: 423 DFMNRRPDHKGRRHTLILSDIYQSGESPRELYREVS 458


>gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
          Length = 468

 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 182/480 (37%), Gaps = 45/480 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK Q     D  E     SI    W E  I  +  ++DSR ++ G  FVAI GN EDGH 
Sbjct: 1   MKWQLWKVSDLAE-----SIGASWWGEDIILPDFFTADSREVRPGAAFVAIRGNAEDGHD 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENI 117
           +I  A+ QGA  I+       Q  S     +  ++ V+++   L+  A + L    P+ +
Sbjct: 56  YIKDALHQGASLIIAEKGRIPQGLSIR---DRAVIEVNDSVVDLARMASAYLSACLPDEV 112

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK++    +++  +         G      +    N L   S       L+  
Sbjct: 113 IAITGSVGKTTTREVLKKCFE---------GMPLVFGAEKSFNTLIGCS----LTILAMP 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +   V  + +  +  G  +  +          T +   H++   T +    AKM +    
Sbjct: 160 AGTNVLILEMGTNKPGEIEEMVQYFPPTRCIITEVSSAHLEGLVTLEGVIAAKMEITRS- 218

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTI 293
            P     I  AD+        + +   C+ + VG +   + + +      +     + TI
Sbjct: 219 -PHLKTLIFNADNENLANAAGQVYGT-CKKIGVGVRKGEVRICQSTFDLVENLPRLKTTI 276

Query: 294 SVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             E G   D    L G     + + A  L   +G      L +LE +  +PGR     T 
Sbjct: 277 RWEDGVISDLYCGLWGTHNSLSLVYALTLYRELGYPLEEALRNLETMTSLPGRGRVFSTR 336

Query: 353 SRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           + G  I  D Y    +S++  L    T+   GR + + G   +  + +  +  +I     
Sbjct: 337 A-GAVIIDDSYNANPSSMKASLNTFSTVEVKGRKLAILGSMKELGKEESVLHEEILRSTH 395

Query: 411 --DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEMLNKQDVLVVAG 466
             D   +       E+ +    ++       I   ++++  A+  A +M+   D +++ G
Sbjct: 396 FLDALFL-----VGEEWKVPLEKMPEHERSKIVIVSKVQSFAVELA-KMIRSGDGVLIKG 449


>gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 452

 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 158/417 (37%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FV IV    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQGL---------DIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNYLGVPMTILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +    A  N     I +  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  ++N+++A    +A+G++    L++ + +    GRF     + +   I   
Sbjct: 269 YQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      +I+ +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLAEFDGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|304321497|ref|YP_003855140.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
 gi|303300399|gb|ADM09998.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
          Length = 473

 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 141/427 (33%), Gaps = 49/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      +    +A+VVS+A    +          + VV        L   +       
Sbjct: 68  GHR--AANVEN-VDAVVVSTAIGQDNPELAAARARHVPVVRRADMLAELMRLKWN----- 119

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + V GT GK++  S +  +   +G     +     I+++A + R  T   +       
Sbjct: 120 --VCVAGTHGKTTTTSMIGSLLD-AGDLDPTVINGGIINNYASNARPGTGDWM------- 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RL       G  TN+  +H+D++        A    F 
Sbjct: 170 ----------VVEADESDGTFIRLPAT---VGVITNIDPEHLDHYGDFAGVRAA-FDQFV 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             LP    A +  D    + ++ R  +          Q   +  + +       +  I  
Sbjct: 216 ANLPFYGFAAVCLDHPEVQALVGRVTDRRLITYGFNPQAD-VRAENLDPTEEGSRFDIIF 274

Query: 296 EGKDF----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              D         P+PG   V NAL AA +   +G+    + +   +   V  RF  VG 
Sbjct: 275 RKDDIVRLEGITLPMPGRHNVLNALAAAIVAREMGVPEDAIRDGFARFRGVRRRFTEVG- 333

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             RG RI  DY H    +   L   RT+  GR+I V          +         + AD
Sbjct: 334 KYRGARIIDDYGHHPVEIAATLSAARTVARGRVIAVMQPHRYTRLQQLFDAFCGCFNDAD 393

Query: 412 IAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIR-------TAIEMLNKQDVL 462
           + +V D  P  E P +      +  GI     +G  +E I           + L   DV+
Sbjct: 394 LVMVGDVYPAGEMPIEGMDKRALADGIARHGHRG--VEVIEAWGGLSQRLRDELQDGDVV 451

Query: 463 VVAGKGH 469
           +  G G 
Sbjct: 452 ICLGAGD 458


>gi|296454397|ref|YP_003661540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183828|gb|ADH00710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 517

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 98/500 (19%), Positives = 182/500 (36%), Gaps = 43/500 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +     ++ D+R +  G + +   G +     ++      G  A V  + YS    
Sbjct: 34  IASADEPFAGITYDTRKVTQGTL-LCCKG-RFK-AEYLNGIDEAGLAAYVAETEYSA--- 87

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQR 139
                +  P L+V++ RK +SL ++  YG +P+N L V G +G       + F Q +   
Sbjct: 88  ----ATAAPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGTKGKTTTSYFTQALINA 142

Query: 140 -SGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            SG  +                ++ LTTP  +   + +   +  G+ ++ +E SS     
Sbjct: 143 VSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMEYLVMEVSSQAYKV 202

Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            R+ G+     +F N+  DHI    H T + Y   K ++           ++ AD  ++ 
Sbjct: 203 DRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIAN----AKSLVLGADSLHAD 258

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKD---FDFLFPLPG 308
            + + A  AG    +               +         +  +   D    D+   + G
Sbjct: 259 LLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASFHIADGDQTLGDYHLSIDG 318

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTS 366
           +F   NA  A  +  A G+        L  +  V    R E            VDYAH  
Sbjct: 319 DFNYLNAAAAIAIAHAAGVSLDDAG-ALHAIESVRIAGRMEQFRDPQSNTLAIVDYAHNY 377

Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            S+  +L  +         RI +V G  G++   +R  + + A +     I T ++  +E
Sbjct: 378 ASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAAENRIANFIFTAEDTDTE 437

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIV 475
               I  E+   I           +R  AI  AI       ++ ++L++ GKG+E     
Sbjct: 438 PFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHADRFNILLIIGKGNERWIKD 497

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D  ++  + GL
Sbjct: 498 HHKHVPFDGDDHVVERMFGL 517


>gi|189464363|ref|ZP_03013148.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
 gi|189438153|gb|EDV07138.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 140/378 (37%), Gaps = 28/378 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   +V       +       + 
Sbjct: 14  TSVTTDSRNCPEGSLFIALKGDNFNGNAFATKALESGSNYAIVD------EVEYAPAGDP 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+    L   A+    +    I+ +TGT+GK++    +  +            P 
Sbjct: 68  HYILVDSCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELIAAVLS----------PK 117

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            TI     +       P+ L   L   +   +  + + AS  G  +  +D  +   G  T
Sbjct: 118 YTILYTQGNLNNHIGVPLTL---LRLKAEHDLGIIEMGASHPGDIKELVDIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++ L   K+S   I+ D+ Y + +       G   +S
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDYLRERKDSTIFIHHDNLYLRNIA-----WGLNQIS 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G +        V               +G+  +    L GE+   NAL A  +     +
Sbjct: 230 YGSEDGLYINGHVTGNSPYLTFEWKAGKDGEHHEVKTQLIGEYNFANALAAVTIGHFFDV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +S  +   L++      R +   T      I   Y     S++  + N   +     +++
Sbjct: 290 ESGKIDTALKEYTPQNNRSQLKQTADN-TLIIDAYNANPTSMQASISNFHNMEIDNKMLI 348

Query: 388 FGCGGDRDQGKRPIMGKI 405
            G   +  +       KI
Sbjct: 349 LGDMRELGKDGPKEHQKI 366


>gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 457

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 150/417 (35%), Gaps = 31/417 (7%)

Query: 6   LIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   E+    + S       +  IN VS D+R I+   +++ I+G K +GH FI +A
Sbjct: 1   MIRRKLNEIQEMVKGSGLKKSHEDIWINGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +      + +       + P ++V++T   +   A     +    I+ +TG+
Sbjct: 61  MGNGATATLWDKNQPIPNI------DFPFILVEDTLDAIQTLAKAYRNQLNVKIIGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    +  I Q    +   +G          +       P+ L   L    +  + 
Sbjct: 115 NGKTSTKDILFNILQTVYKTHKTLG----------NLNNHLGVPLTL---LEMAENTEIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G  +             TN    HI+   + +    AK+ + E L P    
Sbjct: 162 VIEMGMSGLGEIELLSKIASSDVAIITNSTNVHINDLGSVENILKAKLEIIEGLKPHG-- 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             IY  D+    V     +   + ++ G      +  K+ +  N+      V        
Sbjct: 220 LFIYFGDSPPLRVGVEKLDLKQKKVTFGINRDNDYTVKLISSENEGIYFELVGSDSPRLF 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             + G  Q+YNA  A  +     I    + E + K+     R E +  N  G  I  D Y
Sbjct: 280 LSMLGNHQIYNAAAAIAVAQYFNITLEKIQEGMLKIEATGMRNELIKCN--GFDILNDSY 337

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAI 414
                SL  +L  + +     + IVV    FG G +       I  +I     D   
Sbjct: 338 KSNPISLRSVLDTMYSFKKYKQKIVVLGDMFGTGENEITTHIDIGEEIDPSQIDYVF 394


>gi|158834070|gb|ABW81840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 87/250 (34%), Positives = 122/250 (48%), Gaps = 7/250 (2%)

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S I + + LS + +  VT  ++E SSH L QHR+  +   A  F+NL RDH+DYH     
Sbjct: 12  SAIEVQQILSNMLTHKVTFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKK 281
           Y  AK  LF  L  +    II  DD   +  +    NA        +  G QG ++  +K
Sbjct: 72  YEIAKKSLF--LDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWMSAQK 129

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +    N   +         +   PL G F V N L+     +A+      +L+   KL  
Sbjct: 130 IQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQP 189

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKRP+
Sbjct: 190 IPGRMEVFKKVGR-PTVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKRPL 248

Query: 402 MGKIALDLAD 411
           MGKIA  LAD
Sbjct: 249 MGKIAETLAD 258


>gi|312795057|ref|YP_004027979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166832|emb|CBW73835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC
           6.3.2.10) [Burkholderia rhizoxinica HKI 454]
          Length = 476

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 146/427 (34%), Gaps = 28/427 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +  L  ++   LI+  ++          ++VS+DSR      +FVA+ G + D H F+P 
Sbjct: 1   MTMLTLREAAALIDGATVLGDDT--VAFDQVSTDSRSCGPASLFVALKGERFDAHDFLPD 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +G  A++VS         +      P + V +TR  L   A+    +    ++AVTG
Sbjct: 59  LARRGVAAVLVSR--------SPGDWRVPAIRVADTRAALGALAAGWRRRFALPLVAVTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++V   +  I   +   + ++     +++                  L       +
Sbjct: 111 SNGKTTVKEMIASIFAAAVGHAQRLSTQGNLNNVIGMPLT----------LLQLAPQHRL 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +  +  G  Q              N  R+H ++  T +A       +    LP + 
Sbjct: 161 AVVELGMNRPGETQQLARIAGPTIALVNNAQREHQEFMATVEAVALEHASVI-HALPPDG 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+  ADD Y+      A +      ++   G            +   + I       + 
Sbjct: 220 TAVFPADDPYAGIWRVAATDNRIVDFALRRPGANSDAAVQGTTTDTGALRIETRAGALEV 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE---FVGTNSRGGRIY 359
               PGE    NAL A    +A G+    +   LE    V GR +          G  + 
Sbjct: 280 SLRAPGEHNARNALAATAAALAAGVGLDAIRRGLETFEPVNGRLQAKLAQAMPWAGATVI 339

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIV 415
            D Y    +S+   +  +    + R++V+   G   D G    R +         D    
Sbjct: 340 DDTYNANPDSMRAAIDVLTMRQAPRVLVMGDMGEVGDNGPAFHREVGAYARERGLDALYA 399

Query: 416 TDDNPRS 422
             D  R 
Sbjct: 400 LGDASRD 406


>gi|255659952|ref|ZP_05405361.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
 gi|260847826|gb|EEX67833.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
          Length = 465

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 140/422 (33%), Gaps = 41/422 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G +AIVVS+A    +       +  I     T+   S   + L  ++    +AV G  G
Sbjct: 70  RGVDAIVVSTAIPFDNPEVLAAKDLGI-----TKLHRSDINAALVNEY--KGIAVAGAHG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +      +G+S       S +      +  T          +S       + +
Sbjct: 123 KTTTTSMLGVALTHAGVS------PSVVVGGEVPDLGTNAELGTSDYLVSEADESDGSFL 176

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  DH+D++ T +    A  +  + +  +   A+
Sbjct: 177 K---------------LHPHIAVVTNVEDDHMDHYGTMENIIKAFTQFIQNVDKETGYAV 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  D+   + + K   +      ++ ++  +       +           E +       
Sbjct: 222 ICFDNENLRNMAKNL-DRKYITYAIDHEADYRAKNITHSGTGISFDVFHGEEELGHVDLN 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V +A+      ++IG+    +   L   H    RF+  G    G  I  DYAH 
Sbjct: 281 IPGRHNVLDAMACIVTGLSIGVSFEKMASGLAAFHGAKRRFQTKG-RVNGVWIVDDYAHH 339

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +   LK  +     R+I VF                 A   AD+ ++TD     E P
Sbjct: 340 PTEIAATLKAAKETNPKRLICVFQPHRYSRTQLLHEEFGKAFVSADVLVLTDVYAAGEAP 399

Query: 426 ------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
                 + I  E+        + +  R +      + +   D+++  G G     I   G
Sbjct: 400 IPGISGQTIVDEVQRQSGQHVVYEPAREKLAAYLKDFVQPGDLVITMGAGD----IYKTG 455

Query: 479 EK 480
           E+
Sbjct: 456 EE 457


>gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 452

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 158/417 (37%), Gaps = 44/417 (10%)

Query: 11  FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             + + QL+I         +  I  V+ +S  ++   +FV IV    DGH FIP AIA G
Sbjct: 1   MIKSLKQLAIQAGLEYLGEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSAIANG 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+AI+VS    L         + P +V  NT K L   A          I+++TG+ GK+
Sbjct: 60  AKAILVSKKQGL---------DIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKT 110

Query: 128 SVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           SV   +      +++    G  +  +G   TI     D                      
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNYLGVPMTILETPHDVDFAVIEA-------------- 156

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   +  G  +   D I+      TN+G  H++  +T       K  L + L P++
Sbjct: 157 ------GTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKAL-PRD 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I+  DD       K          S+      I +    A  N     I +  +++D
Sbjct: 210 GFCIVNLDDERIPNYAKLLE-CKKISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYD 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P  G+  ++N+++A    +A+G++    L++ + +    GRF     + +   I   
Sbjct: 269 YQLPNIGKHNLFNSVLAIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDT 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           Y  ++ +++  ++++      +I+ +      G + +   R +   +     D   +
Sbjct: 329 YNASAGAVQAAIEDLAEFDGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 478

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 142/397 (35%), Gaps = 39/397 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +  G +FVA+   + DGH F+  A+ +GA A +V+           +  + 
Sbjct: 24  DGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEKGAGAALVT------HVPEGVAEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V++  K L    +    +    ++AVTG+ GK+S    +  I    G +   +   
Sbjct: 77  PLLIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASV--- 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ + +     V     +H G         K      
Sbjct: 134 -----------DSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQMAKPDVAMV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++           K  +F+ L P    A+I AD  ++  +M +A +   R + 
Sbjct: 183 TTVAAVHLEAFANVAEIAVEKAAVFDGLQP-GGVAVINADIEHAAILMAKAVDRRLREVE 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G  G    L  V    +   V    +G    F    PG     NAL A     A+G D 
Sbjct: 242 FGEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASAQAMGADL 301

Query: 330 ALVLEHLEKLHVVPGR-------FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---- 378
           AL    L +     GR        + V T+     I   Y     S+   L+ +      
Sbjct: 302 ALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAALEVLAAAEVT 361

Query: 379 -----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                ++ GR I   G   +    +  +   +A   A
Sbjct: 362 HDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDA 398


>gi|298346704|ref|YP_003719391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|298236765|gb|ADI67897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
          Length = 480

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 162/474 (34%), Gaps = 34/474 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L   + + P +   R      +DSR +  G +FVA+ G   DGH F+     +G + 
Sbjct: 3   LDALREAIGLEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKV 62

Query: 71  IVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---------- 116
            +VS       +    +A       +L V + +  L   A     +              
Sbjct: 63  AIVSHDRTEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKL 122

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++     +Q+    G +   +   +              S  YL      
Sbjct: 123 VIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYL------ 176

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + + AS  G   +  D   L       +G  H++ + + +A    K  + E 
Sbjct: 177 -------VLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILEN 229

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L P    AI+ ADD   + +  R  +      S                  +    +   
Sbjct: 230 LGP-SGMAILNADDPRVEAMSGR-TSGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTP 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L G   V NA+ AA +    G+  A +   L     V      +   + G 
Sbjct: 288 EGSAPVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGV 347

Query: 357 RIYVD-YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD--I 412
            +  D Y    +S+   L  I ++  + R+++V G   +  +    + G+I    A+  I
Sbjct: 348 DLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGI 407

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +++    P ++  E   + +        +  +   A R   E++   D+++V G
Sbjct: 408 SVLLTVGPMAKHIESAYSALKRDGESH-QVMDATAAGRLLQEIVRPGDLILVKG 460


>gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 152/442 (34%), Gaps = 44/442 (9%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            D R  + G +FVA  G   DGH +  QA   GA A++ S   +L           P +V
Sbjct: 31  LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGAVAVLGSRPTAL-----------PTVV 79

Query: 95  VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V++ R  L   A+ +  +  E   ++ VTG+ GK+S    +  +   +  +    G  + 
Sbjct: 80  VEDARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAVLSSAAPTIATKGNLNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                        +  +L              V + A   G      D + L      N+
Sbjct: 140 ELGVPLTMLRAGAATRFL-------------VVEMGARRIGDLAKLTDLVPLDVAVVLNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    ++ A    K  L   L+P    AI+ ADD     V+         VL+ G+
Sbjct: 187 GEAHLGVFGSRAAIAEGKGELVRGLVP-GGTAILNADDP---RVVAMRSLTDGPVLTFGH 242

Query: 273 -QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +   + ++ +      +   T+           P+ G  Q  NA  A    ++ G+   
Sbjct: 243 AEDADVRVRDLTLDRLGRPSFTLRTADATARVKLPIVGAHQALNAAAAVAAALSAGLTLD 302

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
                L    +   R E          +   Y  +  S    L  +  I  GR + V G 
Sbjct: 303 AAAAPLATASLTRWRLELRDIAGGVTLLNDSYNASPGSTRAALDALAAIEGGRRVAVLGQ 362

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               GD  + +   +G+ A   AD+ +           E +R   +      +   +   
Sbjct: 363 MLELGDESEAEHRAVGEYAAARADVVVTVG--------EAVRPLAVGAGERAVAVADNGA 414

Query: 448 AIRTAIEMLNKQDVLVV-AGKG 468
           A+      L   DV++V A +G
Sbjct: 415 AVDWLRGHLAPGDVVLVKASRG 436


>gi|145223571|ref|YP_001134249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|145216057|gb|ABP45461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium gilvum PYR-GCK]
          Length = 504

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/499 (18%), Positives = 166/499 (33%), Gaps = 57/499 (11%)

Query: 3   LQDLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + ++  +   E++      +   +    ++   V  DSR + AG +F+A+ G + DGH F
Sbjct: 1   MIEMSLRRIAEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGHDF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATI------RSNTPILVVDNT----------RKFLS 103
              A+A GA A++ +    +                T  ++  +              L+
Sbjct: 61  AATAVASGAVAVLAARPVGVPAVVVDPVAPQHGAGGTAGVLEHDADGSGAAVLAALARLA 120

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +         I+ +TG+SGK+S    +  +    G      G  +            
Sbjct: 121 AAVAAELVAGGLTIVGITGSSGKTSTKDLIAAVLAPLGEVIAPPGSFNNELGHPWTVLRA 180

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T S  YL              + + A   G             G+  N+G  H+    ++
Sbjct: 181 TESTDYL-------------VLEMSARHPGNIAALARIAPPSIGAVLNVGTAHLGEFGSR 227

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +A    K  L  + +P+    I+ ADD     V   A     RV+ VG       L    
Sbjct: 228 EAIAATKSEL-PQAVPQSGVVILNADDPV---VAAMADKTAARVVRVGRSADARTLDVRA 283

Query: 284 AIHN-----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                    +   T+   G+       + G+ QV NALVAA + +  G     V   L  
Sbjct: 284 DGVTLDPLARPAFTLHAGGEQVPVTLAVHGDHQVSNALVAAAVALECGATLTQVAGALAA 343

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGG 392
              V      V T S G  +  D Y    +S+   LK +  ++           V G   
Sbjct: 344 AGPVSRHRMQVSTRSDGVTVINDAYNANPDSMTAGLKALAWMSRQNPEGSRSFAVLGEMA 403

Query: 393 DRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNR 445
           +  +       +I      LD++ + +V    P S     +   ++ G          + 
Sbjct: 404 ELGEDTITEHDRIGRLAVRLDVSRLVVVGSGRPMS---AMLHGAVMEGSWGSEATPVADA 460

Query: 446 IEAIRTAIEMLNKQDVLVV 464
             A+    + L   DV++V
Sbjct: 461 DAALALLRDELRPGDVVLV 479


>gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM
           555]
 gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016]
 gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555]
 gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 457

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 156/428 (36%), Gaps = 57/428 (13%)

Query: 66  QGAEAIV------VSSAYSLQDFSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
           +GA+  +      ++S   L  ++A I  N   L+          +  +FL         
Sbjct: 52  KGAKVYIGQISQNITSDIDLVVYTAAISKNNEELLKAKDLNIPLMDRAEFLGEIMKGHKY 111

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIY 169
                 +AV+GT GK++  S +  I   + L    +  G    I      N     SP +
Sbjct: 112 N-----IAVSGTHGKTTTTSMLSSITLEANLDPTILVGGNLDIIGG----NVRIGNSPFF 162

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           + +A  Y                   +  L       G   N+  DH+DY++  +   NA
Sbjct: 163 ITEACEY------------------KESFLKFFPF-IGIILNIDADHLDYYKDIEEIQNA 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            ++ F +L+PKE   +  ADD   + + K   N  C V+S G +   I  K +C     +
Sbjct: 204 FIK-FGKLIPKEGYLVCCADD---RRMEKIISNVNCNVMSYGIETGDITAKNICFDKEGR 259

Query: 290 QV--TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   + K F     +PGE  + NAL +  + + + I    ++  L+       RFE
Sbjct: 260 AFFEVYKSDKKLFSLNLSVPGEHNILNALASISVSLILNISVDNIINGLKSFKGTHRRFE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G   +G  +  DYAH    ++  L   +     RII VF                 A 
Sbjct: 320 IKG-QRKGVVVIDDYAHHPTEIKATLNAAKNYPHKRIICVFQPHTFSRTISLFKEFTAAF 378

Query: 408 DLADIAIVTDDNPRSE-DPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           D  D  I++D  P  E D  +I       +II          +    ++    +L + DV
Sbjct: 379 DNVDELILSDIFPAREKDTGEISSSMLCEQIIKRGVKCRNIKDFDSIVQYLNNILTEGDV 438

Query: 462 LVVAGKGH 469
           L+  G G 
Sbjct: 439 LLTIGAGD 446


>gi|225848044|ref|YP_002728207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643233|gb|ACN98283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 433

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/488 (14%), Positives = 181/488 (37%), Gaps = 71/488 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL      +++N          + ++   + DSR      +F+ + G   DGH +I
Sbjct: 1   MRLTDLAKVVEGKILNIE-------EDLEVKSFTIDSRSSTQDSVFIPLKG-NTDGHSYI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ + +   +     + ++           ++V +T + L   A        + ++ +
Sbjct: 53  EDALKKWSVGYLTEKPLNFKNG----------ILVKDTYQALKKIAIYKRKSI-DTVVGI 101

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG+SGK+S    +  +          SG  + +IG   T+++  ++  +           
Sbjct: 102 TGSSGKTSTKELLNFVLSNFYKTYATSGNYNNEIGVPLTLANTPENTHIAIIE------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        + A   G   +  + +    G   ++G  H++   + +     K  +
Sbjct: 155 -------------MGAGKVGDIDYLNNIVNPDIGVLVSVGHAHVEKFGSFENIIKGKGEI 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F          ++  D      ++    +   + ++ G +G  I +  +  I       +
Sbjct: 202 F----NTSHYHVLPFD------LLNYYKDKLKKFITFGEEG-NIKVYDIKIIPEGTTGKV 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + + +  D   P+  +    N    AG+   +G+D    L+ L++ + + GR + +   +
Sbjct: 251 AYKNQVLDLTIPIFNKGIFKNIGAVAGVLYHLGLDPIESLKVLKEFNQIQGRGKIIKIGN 310

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDL 409
               I  D Y     S++  ++ +  I + +++V   +   G + ++  R I  +I    
Sbjct: 311 L--TIIDDSYNANPLSVKNAIETLNEIPTVKVLVLGDMLELGEESEKLHRSIAKEILKSH 368

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
            D   +       E+ + I+ E+      ++   ++ E      ++ N    ++V G +G
Sbjct: 369 IDYVFL-----YGEETKYIKQELEG--KKYVLHTDKKEIANQLKKLENSSPTVLVKGSRG 421

Query: 469 HETVHIVT 476
            +   ++ 
Sbjct: 422 MKMEEVIE 429


>gi|296117539|ref|ZP_06836123.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969270|gb|EFG82511.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 477

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 147/427 (34%), Gaps = 55/427 (12%)

Query: 70  AIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +    ++ P++   +    L               + + GT GK
Sbjct: 73  VVVTSFAAIPQDNPELVAAREADIPVIRRSDLLAELM---------QDRTQVLLAGTHGK 123

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S V    Q +G   SF IG                     L +A +          
Sbjct: 124 TSTTSMVVSALQAAGKDPSFAIG-------------------GQLNRAGTNAHHGKDDIF 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA        R D         TN+  DH+DY  + +AYF      F E +      I
Sbjct: 165 VAEADESDASLLRYD---PDIAVITNIEPDHLDYFGSAEAYFQV-FDDFAERIKPNGTLI 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTISVE 296
           +  +D ++ E+ +RA  +G +V+  G          +                 VT+ + 
Sbjct: 221 VCVEDEHAAELGRRAVESGVQVVGYGSSKALAQHPDITPGAEILTEEVGRETTAVTVKLP 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  +   +PG   V N+  A       G  +  + E L     V  RFE+ GT     
Sbjct: 281 SGEVSYDLQIPGHHMVLNSAAALIAGELAGAKAQALAEGLSDFTGVRRRFEYRGTAGDNI 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           R+Y DYAH    +  +L   R         GR++V F         +       AL LAD
Sbjct: 341 RVYDDYAHHPTEVAAVLGAAREKVTAEGLGGRVVVCFQPHLFSRTIEFANEFAKALSLAD 400

Query: 412 IAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             ++ D     E P +     I ++ I        + +   A +T  EM N  D+++  G
Sbjct: 401 AVVLLDIFGAREQPVEGVSSRIISDKIADDVDVTYEPDFSAARQTVAEMTNSNDLVLTMG 460

Query: 467 KGHETVH 473
            G  T+ 
Sbjct: 461 AGSVTLQ 467


>gi|148358647|ref|YP_001249854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
 gi|148280420|gb|ABQ54508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
          Length = 406

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 125/366 (34%), Gaps = 38/366 (10%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G + DGH FI +A A+GA A VV+                P  VV +    L+  A+   
Sbjct: 2   GERFDGHDFIKEAEAKGASAAVVNRLIDGVH--------IPQFVVVSPLMALAKIAAAHR 53

Query: 111 GKHPENILAVTGTSGKSSVASFVQQIC-----QRSGLSSFQIGPTSTISSFAQDNRLTTP 165
            +    I+A+TG++GK++V   +  I         G  +  IG                 
Sbjct: 54  QEMSCPIIALTGSNGKTTVKEMIATILPQPSHATKGNLNNHIGVPL-------------- 99

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   L+           + A+  G   H +  ++       N+   H++   +   
Sbjct: 100 ------SMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDG 153

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              +K  + + L P    AI+  DDAY+        +      S  +             
Sbjct: 154 VARSKGEIHQGLSPT-GVAIVNDDDAYAHFWDDLIADKKILRFSSLHPADIYAQDIRLDT 212

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           H +   T+ +     +    +PG   V NAL AA  C A+GI    +   L     V GR
Sbjct: 213 HGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKGR 272

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIM 402
              +   ++   I   Y     S+   L+ + +   GR I VFG     G+        +
Sbjct: 273 MTMLSGQNQSTVIDDTYNANLRSVLTALE-VLSGRPGRKIFVFGDMGELGEWTTQHHREV 331

Query: 403 GKIALD 408
           G  A  
Sbjct: 332 GIAARQ 337


>gi|118467198|ref|YP_881536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
 gi|118168485|gb|ABK69382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
          Length = 533

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/517 (16%), Positives = 147/517 (28%), Gaps = 83/517 (16%)

Query: 3   LQDLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + DL      +++      I       R++   V  DSR +  G +F+A+ G + DGH  
Sbjct: 1   MIDLTVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHDH 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---- 115
                         + A       A      P +V        +L     +         
Sbjct: 61  AE-----------SAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAV 109

Query: 116 --------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
                                I+ +TG+SGK+S    V  +    G      G  +    
Sbjct: 110 LAALAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELG 169

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   T    YL              + + A   G      +      G   N+G  
Sbjct: 170 HPWTVLRATADTDYL-------------VLEMSARHPGNIAALAEIAPPAVGVVLNVGTA 216

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--- 272
           H+    +++A    K  L  + +P     ++  DD     + +       RV    +   
Sbjct: 217 HLGEFGSREAIARTKSEL-PQSVPASGVVVLNVDDPTVAAMAEVTAARVVRVSRAEHTEA 275

Query: 273 -QGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPG--EFQVYNALVAAGLCIAIGI 327
                           +   T+  S  G        L    + QV NAL AA + +  G 
Sbjct: 276 GPSDVWAGPVSLDELARPGFTLYHSHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGA 335

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG---- 382
               V+  L     V      V T   G  +  D Y    +S+   L+ +  I  G    
Sbjct: 336 TVEQVVAALAGAGPVSRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEP 395

Query: 383 -----RIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEI 432
                R   V G   +          +I      LD++ + +V     RS         +
Sbjct: 396 GAPARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSVSAMH-HGAV 452

Query: 433 IHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + G       G +   +   A+      L   DV++V
Sbjct: 453 MEGSWGSADKGAVNVPDAEAALELLRAELQPGDVVLV 489


>gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
          Length = 473

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 91/421 (21%), Positives = 152/421 (36%), Gaps = 26/421 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++AG +FVA+ G + DGH ++ QA   GA  +VV               N P 
Sbjct: 43  VVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFCLVVEH--------VETGLNVPQ 94

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV+N+R+   L A     +    + AV G++GK++    ++ I              +T
Sbjct: 95  LVVENSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMKAILAA---HWGVQNIHAT 151

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D  +            + +   G+ H        G      D I+      TN 
Sbjct: 152 EGNFNNDVGVPHTLLGLHCGCRAAVVEAGMNH-------RGEMARLADWIRPTVVLMTNA 204

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H  Y +T          L   L P +  A+  ADD  +      A   G R L+   
Sbjct: 205 QREHQAYLETVAEAAFENGLLIAAL-PNDGVAVYPADDPCADVWASYALARGVRTLTY-A 262

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + +       +   + + +   G D      + G   ++NA+ AA   +A  ID   +
Sbjct: 263 TAEGVAADVRGELVPGKGLRLLAYGIDRVIGLQVQGAHNIHNAVGAAAAALAQQIDVDAI 322

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E L     +PGR   + + +    I   Y    +S    +  +        I +FG  G
Sbjct: 323 AEGLAAFKALPGRGARMASPAGFTLIDDAYNCNPDSAIASI-AMLAEEKPARIFLFGDMG 381

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIR 450
           +  +       ++      + I   D   +  P    A    GI G   +   +R E I 
Sbjct: 382 ELGRDAELWHAEVGGAAKTLGI---DYFWAAGPLSKHAAEAFGIDGVRGRWFADRDELIA 438

Query: 451 T 451
            
Sbjct: 439 H 439


>gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1
 gi|88192085|pdb|2AM2|A Chain A, Sp Protein Ligand 2
          Length = 454

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 155/459 (33%), Gaps = 57/459 (12%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + ++ +   DSR I  G +FV + G + DGH FI  A   GA   +            
Sbjct: 21  FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEV------- 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              SN P ++VD+        AS    K   ++ AVTG++GK++    +  +      + 
Sbjct: 73  ---SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDXLAHLLSTRYKTY 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G  +                  L              V      H  D H L  + +
Sbjct: 130 KTQGNYNNEIGLPYTVLHXPEGTEKL--------------VLEXGQDHLGDIHLLSELAR 175

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 T +G  H+ + + +      K ++       +  A      A +  +++     
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKXQI------ADGXASGSLLLAPADPIVEDYLPI 229

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +V+  G   +   L+    +  K  +T      +     P+ G++   NA +A+ + +
Sbjct: 230 DKKVVRFGQGAE---LEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAXIASYVAL 286

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-- 380
             G+    +    + L +   R E+    + G  I  D Y     + ++IL+    I   
Sbjct: 287 QEGVSEEQIRLAFQHLELTRNRTEW-KKAANGADILSDVYNANPTAXKLILETFSAIPAN 345

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHG 435
             G+ I V     +       +  +  L L+    DI I        ED  ++       
Sbjct: 346 EGGKKIAVLADXKELGDQSVQLHNQXILSLSPDVLDIVIF-----YGEDIAQLAQLASQX 400

Query: 436 IP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
            P          E  ++ E  ++   E L   D +++ G
Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439


>gi|225619257|ref|YP_002720483.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
 gi|254765984|sp|C0QXF2|MURC_BRAHW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225214076|gb|ACN82810.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
          Length = 462

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/425 (22%), Positives = 170/425 (40%), Gaps = 45/425 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q I     A+V SSA S  +    I + +  + V +  + L+      YG    
Sbjct: 57  GHK--AQNIEDDVTAVVTSSAISPTN-EEIIEAKSKKITVISRGEMLAELMRLRYG---- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A++G+ GK++  S + QI   +GL+   I     I     + +           A +
Sbjct: 110 --IAISGSHGKTTTTSLISQIMMHAGLNPVCI-----IGGNHFNLKSN--------AACN 154

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            LSS+   ++  EA        RL     +    TN+  DH+DY+   +A   A +  F 
Sbjct: 155 DLSSE---YMVCEADESDGSFLRLS---PVINVVTNIDNDHLDYYGNVEALRVAFLE-FI 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    + +  +D   K++ K A+    +  S G+   +       +I  +  +T   
Sbjct: 208 NKVPFYGCSFLCFEDNVVKDLSKSANK---KYYSYGFSKDYDFYVDRDSIRVEAPITYFT 264

Query: 296 EGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              +     +F  PL G   V N+L + G+ I +GID A + E L+    V  R   +  
Sbjct: 265 AYHNSECLGEFSVPLIGIHNVLNSLASIGVGIHLGIDIADIKEGLKTFEGVGRRLNKL-- 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +   ++ DYAH    ++  L ++R    + RII VF               + A + A
Sbjct: 323 YDKEITLFDDYAHHPTEIKATLSSVRNAYKNRRIIAVFQPHRYSRTELLLNDFEYAFNDA 382

Query: 411 DIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVV 464
           D  I++D     E P      +I  +++      +     IE +   ++ + K  D+++ 
Sbjct: 383 DEVIISDIYAAGESPIPGISGEIICDVVRKQNNHVRYIPNIEDVLPVLDDIKKDGDIILT 442

Query: 465 AGKGH 469
            G G+
Sbjct: 443 LGAGN 447


>gi|282857255|ref|ZP_06266495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
 gi|282584905|gb|EFB90233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
          Length = 451

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 171/448 (38%), Gaps = 45/448 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR  Q G  FVA+ G K DGH FIP  +A+G   IV  +A   +++S+       I
Sbjct: 20  VRVDSRETQKGEGFVALRGTKVDGHRFIPDVLAKGGALIVCEAAAYREEWSSLYPQCAFI 79

Query: 93  LVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L  +     L+  AS            +A+TG+ GK+S  +  + + +         G  
Sbjct: 80  LTPERCEYGLASLASVYLKSLERLRETVAITGSVGKTSAKNDTKALLEGYFKIHAAAGNY 139

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +T+   A                L+  +   V  + + A+  G        +     + T
Sbjct: 140 NTLIGCAVTV-------------LAAPADTEVVLLEMGANHRGEIAEMTRYLPPTIAAVT 186

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269
            +   H++   + +    AK  +F         A+I  D+     + KRA       V+ 
Sbjct: 187 EVAPAHLENFGSLEGVLQAKTEIFAS--ENLRCAVINGDNGM---LCKRAEELRLPEVIR 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTIS-----VEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            G +G+ +  ++  +   K   T+      ++G  F+   PL G  Q+Y    A  +   
Sbjct: 242 FGRRGEVLFAREHLS-WEKDHFTVRAILTGLDGLSFNLSLPLAGVHQLYPLCCAVAIAGR 300

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGR 383
           +G+ S  +   L K     GR E   + S    +   Y  +  +++  L  + +    GR
Sbjct: 301 LGLSSREIAASLPKCRNSAGRGEIRLSESGAAILDECYNASPAAVKASLAAMDSADIPGR 360

Query: 384 IIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
             ++ G   +         GKI   AL ++D+  +       E+ + +      G   + 
Sbjct: 361 RFLILGEMLELGTASVSEHGKIFERALRVSDLLYL-----FGEEWKNV-----DGTADYY 410

Query: 441 EKGNRIEAIRTAIEMLNK--QDVLVVAG 466
              + I+A+  A++       DV++V G
Sbjct: 411 Y--DSIDALIEAVDGTRPGEGDVILVKG 436


>gi|212715570|ref|ZP_03323698.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660937|gb|EEB21512.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
          Length = 517

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 200/519 (38%), Gaps = 44/519 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+++I  D       L    +   ++    ++ D+R + +G + +   G +     ++  
Sbjct: 18  LREIIQGD----AWTLDAQTINGFDKPFGSITYDTRQVVSGAL-LCCKG-RFK-AEYLDG 70

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              +G  A V  + +S         +  P L+V++ RK +SL ++  YG +P+N L V G
Sbjct: 71  IDDRGLAAYVAENDFSA-------ATKAPGLIVNDARKAMSLLSAAFYG-YPQNQLKVIG 122

Query: 123 TSGKSSV---ASFVQQICQRS---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +G       A   Q +         + F             ++ LTTP  +   + +  
Sbjct: 123 ITGTKGKTTTAYLTQAMLNGCSDGKCALFSSADNCLDGHTYVESDLTTPESMDAFRMMRE 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
            +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + YF+ K ++ 
Sbjct: 183 AADNGMKYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYFHCKRQIV 242

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
           +         ++    A++  + + A  A   V +    +     +       +  +  I
Sbjct: 243 KNC----RSLVLGTACAHADLIRQDAAIADIPVTTFALGEASAADVTAWPESADHSRFAI 298

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALV--LEHLEKLHVVPG--RFEF 348
           +VEG+        L G+F   NA  A  +  A+G D       E L  +  V    R E 
Sbjct: 299 AVEGEQIGSLSLQLDGDFNYANAAAAIAIAHAVGFDFHETAAKEALRNMEPVRIAGRMEH 358

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKI 405
                      VDYAH   S+  +L  +          + +V G  G++   +R  + + 
Sbjct: 359 FHDTKSNTIAIVDYAHNYASVTALLDYVDQRYGKDDPEVTLVTGSAGNKAYDRRSEIVRA 418

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRT--AIEMLNKQ 459
           A +  +  I+T ++   E  E +   ++  +           +R EA+ +  AI+  N  
Sbjct: 419 AQNRVNHLILTFEDTDDEPVEHVCQNMLDSVTNPDLDARIILDRTEAVESTVAIDRKNPN 478

Query: 460 --DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
              ++++ GKG+E              D  I+  I GL+
Sbjct: 479 RLHIILIIGKGNERWFKNHGKHIPFEGDDHIVERIFGLV 517


>gi|164688866|ref|ZP_02212894.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
 gi|164602070|gb|EDQ95535.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 146/424 (34%), Gaps = 49/424 (11%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--- 115
           FI  A         +S    +  ++A I  + P L+    +  L++  +   G+      
Sbjct: 49  FIGHAKEN------ISDDIDIVVYTAAIHPDNPELIEAKNKNKLTINRAAFLGQLMREYK 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKA 173
           N +AV+GT GK++  S +  I + + L    +  G   +I      N     S  ++ +A
Sbjct: 103 NSIAVSGTHGKTTTTSMLSTIFEHAELDPTILVGGNLKSIGG----NVKIGHSDHFITEA 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y+ S                               N+  DH+DY         A    
Sbjct: 159 CEYVDSF-------------------LNFNPKIAIVLNIEEDHLDYFSGIDEI-KASFNK 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQV 291
           F +LLP +   +I  D+      M   H+   + +  G +     + +  A  +      
Sbjct: 199 FGKLLPSDGYFVINGDNQN----MDILHDVKAKAIKFGKKESNDVIIENIAFDDLGCGSF 254

Query: 292 TISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            ++  GK    F   +PG   +YNA  A  + +  GID   V E +     V  RFE  G
Sbjct: 255 DLNYMGKKLTGFKLSVPGLHNIYNATSAIIVSLVSGIDLETVKEGIIDYTGVGRRFERKG 314

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G  I  DYAH    ++  L   +    G +  VF                 A   A
Sbjct: 315 -QYNGAAIIDDYAHHPTEIKATLSTAKRFKKGTLWCVFQPHTYSRTISLLDEFAEAFYSA 373

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+TD     ED         +  ++ H     I      + ++   E + + DV++ 
Sbjct: 374 DKVIITDIYAAREDDPGTVHSRDLVEKLQHNNVDAIYISQFEDIVKYLKENVKENDVVIT 433

Query: 465 AGKG 468
            G G
Sbjct: 434 TGAG 437


>gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
 gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
          Length = 461

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 149/398 (37%), Gaps = 62/398 (15%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN---------------KEDGHLFIPQ 62
           ++I   Q  E  ++ +  DSR I+ G +F+ I  +               ++DGH FI  
Sbjct: 17  INISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFINS 76

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A               ++++ P+++V +T+  L   A     K     +AVTG
Sbjct: 77  ALKNGAVASFADH---------IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAVTG 127

Query: 123 TSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           ++GK++    +  +        +    ++ +IG  +TI +   D                
Sbjct: 128 SNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTE-------------- 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 +  + +     G        ++      T +G  HI++ +T+    +AKM + +
Sbjct: 174 ------IAVIEMGMDHLGQLTALSKMLEPNIALITMIGEAHIEFFKTRDKIADAKMEIIK 227

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L    +       D     + +RA       ++ G +        V  I +K++++  V
Sbjct: 228 GLKKDGTFIY----DGDEILLKERADLFSGEKVTFGEKESNNFW--VSQIEDKKRLSFKV 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             + +     L G+F   N   A  +     + S  + E  + L +   R + + T S+G
Sbjct: 282 NQETYSV--NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLL-TGSKG 338

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
             I  D Y     +    ++ ++     G+ I+V G  
Sbjct: 339 ETIISDVYNSNPTAAIKAIEILKDFPTQGKKILVLGDM 376


>gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acidiphilium cryptum JF-5]
 gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium cryptum JF-5]
          Length = 451

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 97/446 (21%), Positives = 171/446 (38%), Gaps = 47/446 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR I  G +FVA+   + DGH F+P A A+GA  ++V+                
Sbjct: 26  TGVSIDSRTIAPGELFVALADAR-DGHDFVPDAEAKGAACVLVARDVGA----------G 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L+V++ +  L+        +    ++AVTG+ GKS+    +++I    G +       
Sbjct: 75  PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRILSAFGATHA----- 129

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  + I +   L+ L ++    V     +H G         +   G  
Sbjct: 130 ---------AEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSAITRPHVGVI 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +G  H+    + +A  + K  L   ++P    A +     +   + +RA + G RV+S
Sbjct: 181 TAIGSAHLGLMGSVEAIADEKAELLRGVVP--GGAAVLPRGPFLSRLARRARD-GVRVVS 237

Query: 270 VGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G Q      L +  +  +   VT ++           PG     NA+ A     A+G+D
Sbjct: 238 FGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAALAAAAALGLD 297

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVD--YAHTSNSLEMILKNIRTITSGRII 385
            A     L+    + GR      N  G  I  +D  Y  + NS+   L+ +  +   RI 
Sbjct: 298 PAQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVLSLLPGRRIA 357

Query: 386 VVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFI 440
           V+       D    +   +      +AD+      + R    E PE+ R          +
Sbjct: 358 VLGDMLELGDYADDEHRDLADAVSGVADLVFACGPHMRVMFDELPERQRG------AWAV 411

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +   A+R A+ +    DV++V G
Sbjct: 412 DAASLAPAVRAALAV---GDVVLVKG 434


>gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 509

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 151/444 (34%), Gaps = 84/444 (18%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R I+ G +F+A  G   DGH F+ +A  +GA A +VS              + 
Sbjct: 27  SNISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKGAIAAIVSEGK---------YKSF 77

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++V +T K L   AS           ++AVTG+ GK++    +  +  + G+S    G
Sbjct: 78  PLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHANEG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +              +  YL                +  +  G  +            
Sbjct: 138 NLNNNIGLPLTILKAPKNCQYLILE-------------MGMNKAGEIKELSKISNPNIAV 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------ 262
            TN+   H +   +      AK+ +    +      ++  D+ Y   +   A+       
Sbjct: 185 ITNIEPAHTENFSSLFDVAQAKLEILYG-MKNNGTLVLSRDNKYYDYLSSHANRNVISFG 243

Query: 263 -------------------------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--- 294
                                    +   VL     G  I  + +  ++NK  +  S   
Sbjct: 244 KDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIPASRAG 303

Query: 295 ----------------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                            + +  +    + GE   Y+ L  A +  ++G+D + +   L+ 
Sbjct: 304 MTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLPLALKN 363

Query: 339 LHVVPGRFEF--VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             V  GR     V  N +   +  D Y  +  S++  +K + T ++ R + + G   +  
Sbjct: 364 FSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRKVALLGDMLELG 423

Query: 396 QGKRPIMGKIALDLADIAIVTDDN 419
                    +      + I+T++N
Sbjct: 424 DESIEFHTDL------VKIITENN 441


>gi|78065117|ref|YP_367886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
 gi|77965862|gb|ABB07242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
          Length = 468

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 141/402 (35%), Gaps = 27/402 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
              + VS+DSR    G +FVA+ G + D H F+    A+GA A +V+             
Sbjct: 24  VTFDRVSTDSRTAGPGDLFVALKGERFDAHDFLGDVAARGASAALVAH--------VPAG 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P +    TR  L   A     +    ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  VTMPAIEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +++                  L   ++  +  + +  +  G  +           
Sbjct: 136 ATAGNLNN----------DVGLPLTLLRLSAAHRLAVIEIGMNHPGETEILARLTAPTVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A       +    LP +  A+  ADDAY+      A       
Sbjct: 186 LVNNAQREHQEFMATVEAVALEHAAVI-HALPPDGVAVFPADDAYAGIWRVAATGNRILD 244

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            ++   G+    + V    +  ++ I              GE    NAL A    +  G+
Sbjct: 245 FALHDAGRQNDAQ-VTGRLHGGELAIDTPAGVVTVRLRALGEHNARNALAATAAALGAGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
             + + + LE    V GR +    +  +  G  +  D Y    +S+   +  +    + R
Sbjct: 304 ALSAIKQGLESFEPVKGRLQVKQAIAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAPR 363

Query: 384 IIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
           ++V+   G   D+G    R +         D      D  R 
Sbjct: 364 VLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRD 405


>gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 825

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 151/389 (38%), Gaps = 29/389 (7%)

Query: 27  ERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           E  I+ V +DSR +      +F A+  N+ DGH +I +   +G    VV     +   +A
Sbjct: 21  EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYISELYRRGVRCFVVE---EVPARAA 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  +   L V +TR+ L   A R        I+ +TG++GK+ V  ++ Q+        
Sbjct: 78  ELFGDANFLCVRSTRQALQRLAQRHREAFNIPIVGITGSNGKTMVKEWLYQLLSPQ---- 133

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                  T S  + ++++  P  ++L  + S L            S  G  Q   D IK 
Sbjct: 134 ----MVVTRSPRSYNSQIGVPLSVWLLNSHSQLGIFEA-----GISQKGEMQALHDIIKP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H +   T +     K+RLFE         +  ADD     V+   +N G
Sbjct: 185 NIAVLTNIGSAHEENFATPEEKCREKLRLFEG----AEVMVYNADDDLVTRVLNETNNKG 240

Query: 265 CRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLC 322
            R+  S       + + K+        +    +G     +  P   +  V N++V A +C
Sbjct: 241 ERLAWSTKSPNAAMFVTKIDKQPTHTTIHYIYKGGQPASYSLPFIDDASVCNSVVCATIC 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI---RT 378
           + +G+D+  + + + +L  V  R E V     G  +  D Y    NSL++ L  +     
Sbjct: 301 LHVGLDAHTIDKRMRRLEPVAMRLE-VKEGLNGCTLINDSYNSDINSLDIALDFMNRRPD 359

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +  +V             +  +++ 
Sbjct: 360 HNGQQRTLVLSDILQSGLPDAELYKEVSS 388


>gi|148265984|ref|YP_001232690.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
 gi|189028991|sp|A5G8J9|MURC_GEOUR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146399484|gb|ABQ28117.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
          Length = 458

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 139/425 (32%), Gaps = 44/425 (10%)

Query: 56  GHLFIPQAIAQGA--EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           G +FI  A    A  + +V+SSA    +          I V+        L   +     
Sbjct: 51  GEIFIGHARENVANVDVVVISSAVHDDNPEVVEAMERLIPVIPRAEMLAELMRMKYG--- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  S V  I  + G     I PT  I                    
Sbjct: 108 ----IAIAGTHGKTTTTSMVATILAKGG-----IDPTIVIGGRLNSIGTNAR-------- 150

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 QG   V+    S G        +       TN+  DH+D+++      +  ++ 
Sbjct: 151 ----LGQGQFLVAEADESDGSFLK----LSPTIAVVTNIDADHLDFYKDIDEIKDTFVQ- 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVT 292
           F   +P    A++  D+    +++        R  + G           V          
Sbjct: 202 FINKVPFYGLAVLCLDNGNIADIIPLVKK---RFNTYGLSTQADFRATDVRHTGFTTSFV 258

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              +G    +  F +PG   V NAL    + + + I  A +    +    V  RF+ V  
Sbjct: 259 AHYKGTLLGEITFSMPGAHNVLNALATIAVAMELNIPFAEIQAGFKAFGGVGRRFQ-VKG 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             R   +  DY H    +   L   +     R++V F         +       A   AD
Sbjct: 318 EVRDIMVVDDYGHHPTEIRATLAAAKGGWDRRLVVAFQPHRYSRTKELFEEFVKAFYDAD 377

Query: 412 IAIVTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I I+TD  P  E P E I AE +      HG        +R       + ++   D+++ 
Sbjct: 378 ILILTDIYPAGEKPIEGITAESLAARIKRHGQKDVTYIADRNAVCDHLLGIVKPGDIVIT 437

Query: 465 AGKGH 469
            G G+
Sbjct: 438 LGAGN 442


>gi|304321492|ref|YP_003855135.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
 gi|303300394|gb|ADM09993.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
          Length = 478

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 163/458 (35%), Gaps = 49/458 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER +  +S D+R +  G +F+A+ G + DGH F          A   ++A  L    A +
Sbjct: 31  ERPVYGLSFDTRSLAKGDLFIALSGAR-DGHDFAQA------AADKGAAAALLTHRPADL 83

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L+VD+  + L   A     +    ++AVTG+ GK++    ++      G     
Sbjct: 84  SEALPGLMVDDPLRALEDLARAARQRCFGALVAVTGSVGKTTTKEMLRAALSPLGEVHA- 142

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
                           +  + I +  +L+ L  Q    V     +H G     +D ++  
Sbjct: 143 -------------AAKSFNNHIGVPISLASLPQQAAFGVFEIGMNHAGEITPLVDLVRPH 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T++   H++   +     +AK  +    + +   A++ +D+ Y + ++ RA   G 
Sbjct: 190 VAIITSVAAVHLENFSSVDGIADAKAEILSG-IRRGGAAVLPSDNPYYERLVSRARECGV 248

Query: 266 -RVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            R++  G+               I    +  I++ G+       +PG  QV NAL     
Sbjct: 249 ERIVPFGFGDGARPGIWGTAPVMIEGGSRTEIAIAGERHVLELGVPGTHQVSNALAVIAA 308

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLE---MILKN 375
             A+G+D   ++E L       GR        RG ++ V    Y     S+      L  
Sbjct: 309 GAALGLDLESMIEGLASFRAGAGRGARHHVTIRGKKVLVLDESYNANPTSMASALAQLGE 368

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDN---PRSEDPEKI 428
              +  GR + V G   +       +   +A  + D       +        R   P   
Sbjct: 369 TEPVAGGRRLAVLGEMKELGPTSDALHAGLAGPIEDAGTARVWLAGSGMAPLRDALPADR 428

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            AE     P  +            ++ L + DV++  G
Sbjct: 429 VAEWAPKAPDLLSN---------LVDSLEQGDVVLFKG 457


>gi|315443918|ref|YP_004076797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. Spyr1]
 gi|315262221|gb|ADT98962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. Spyr1]
          Length = 501

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/501 (18%), Positives = 165/501 (32%), Gaps = 62/501 (12%)

Query: 1   MKLQDLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGH 57
           M L+        E++      +   +    ++   V  DSR + AG +F+A+ G + DGH
Sbjct: 1   MSLR-----RIAEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGH 55

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATI------RSNTPILVVDNT----------RKF 101
            F   A+A GA A++ +    +                T  ++  +              
Sbjct: 56  DFAATAVASGAVAVLAARPVGVPAVVVDPVAPQHGAGGTAGVLEHDADGSGAAVLAALAR 115

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+   +         I+ +TG+SGK+S    +  +    G      G  +          
Sbjct: 116 LAAAVAAELVAGGLTIVGITGSSGKTSTKDLIAAVLAPLGEVIAPPGSFNNELGHPWTVL 175

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
             T S  YL              + + A   G             G+  N+G  H+    
Sbjct: 176 RATESTDYL-------------VLEMSARHPGNIAALARIAPPSIGAVLNVGTAHLGEFG 222

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +++A    K  L  + +P+    I+ ADD     V   A     RV+ VG       L  
Sbjct: 223 SREAIAATKSEL-PQAVPQSGVVILNADDPV---VAAMADKTAARVVRVGRSADARTLDV 278

Query: 282 VCAIHN-----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                      +   T+   G+       + G+ QV NALVAA + +  G     V   L
Sbjct: 279 RADGVTLDPLARPAFTLHAGGEQVPVTLAVHGDHQVSNALVAAAVALECGATLTQVAGAL 338

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGC 390
                V      V T S G  +  D Y    +S+   LK +  ++           V G 
Sbjct: 339 AAAGPVSRHRMQVSTRSDGVTVINDAYNANPDSMTAGLKALAWMSRQNPEGSRSFAVLGE 398

Query: 391 GGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKG 443
             +  +       +I      LD++ + +V    P S     +   ++ G          
Sbjct: 399 MAELGEDTITEHDRIGRLAVRLDVSRLVVVGSGRPMS---AMLHGAVMEGSWGSEATPVA 455

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +   A+    + L   DV++V
Sbjct: 456 DADAALALLRDELRPGDVVLV 476


>gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 152/442 (34%), Gaps = 44/442 (9%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            D R  + G +FVA  G   DGH +  QA   GA A++ S   +L           P +V
Sbjct: 31  LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGAVAVLGSRPTAL-----------PTVV 79

Query: 95  VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V++ R  L   A+ +  +  E   ++ VTG+ GK+S    +  +   +  +    G  + 
Sbjct: 80  VEDARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAVLSSAAPTIATKGNLNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                        +  +L              V + A   G      D + L      N+
Sbjct: 140 ELGVPLTMLRAGAATRFL-------------VVEMGARRIGDLAKLTDLVPLDVAVVLNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    ++ A    K  L   L+P    AI+ ADD     V+         VL+ G+
Sbjct: 187 GEAHLGVFGSRAAIAEGKGELVRGLVP-GGTAILNADDP---RVVAMRSLTDGPVLTFGH 242

Query: 273 -QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +   + ++ +      +   T+           P+ G  Q  NA  A    ++ G+   
Sbjct: 243 AEDADVRVRDLTLDRLGRPSFTLRTADATARVKLPIVGAHQALNAAAAVAAALSAGLTLD 302

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
                L    +   R E          +   Y  +  S    L  +  I  GR + V G 
Sbjct: 303 AAAATLATASLTRWRLELRDIAGGVTLLNDSYNASPGSTRAALDALAAIEGGRRVAVLGQ 362

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               GD  + +   +G+ A   AD+ +           E +R   +      +   +   
Sbjct: 363 MLELGDESEAEHRAVGEYAAARADVVVTVG--------EAVRPLAVGAGERAVAVADNGA 414

Query: 448 AIRTAIEMLNKQDVLVV-AGKG 468
           A+      L   DV++V A +G
Sbjct: 415 AVDWLRGHLAPGDVVLVKASRG 436


>gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
 gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
          Length = 824

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 153/384 (39%), Gaps = 27/384 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       R+  +  + +DSR +      +F A+   + DGH +I +   +G 
Sbjct: 5   IEKVTTLIGARRYGDRDCNVGFILTDSRSLCFPEETLFFALKSERNDGHNYIAELYRRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS    + +  A+   +   L V NT + L   A R   +    I+ +TG++GK+ 
Sbjct: 65  RNFVVS---DVPNNFASDYPDANFLRVVNTLEALQRLAERHRDEFNIPIVGITGSNGKTI 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  ++L   L+  +  G+    + 
Sbjct: 122 VKEWLYQLLSD--------DMYVTRSPRSYNSQIGVPLSVWL---LNKQTEIGIFEAGI- 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+      TNLG  H +  ++++A    K+ LF          +   
Sbjct: 170 -SEPGEMLALRDIIQPTIAVLTNLGSAHQENFKSKEAKCREKLILF----HDAKTIVYNM 224

Query: 249 DDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD    + ++   ++      S       + +K V    N   +  + + K+  ++ P  
Sbjct: 225 DDEIINDTVESYNYSGEKITWSFKNPKATMFIKSVEKRKNDTVINYNFKDKEGKYILPFI 284

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
            E  + N+++ A + + +G+ + ++   + KL  V  R E V     G  +  D Y    
Sbjct: 285 DEASISNSIICAIVTLCLGVSTDVLSRRMAKLEPVAMRLE-VKVGQHGCTLINDSYNSDV 343

Query: 367 NSLEMILKNI--RTITSGRIIVVF 388
           NSL++ L  +  R    GR   + 
Sbjct: 344 NSLDIALDFMNRRPDHKGRRHTLI 367


>gi|160896913|ref|YP_001562495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
 gi|160362497|gb|ABX34110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
          Length = 471

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 173/487 (35%), Gaps = 53/487 (10%)

Query: 1   MKLQ---DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           M LQ   +LI    P+         +   +  +  V +D+R +QAG +FVA+ G + D +
Sbjct: 2   MTLQQALELIQSHIPQ------ARLVGNGQAVLTRVHTDTRTLQAGDLFVALKGERFDAN 55

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F+             + A +         +    + V ++   L   A+    +    +
Sbjct: 56  QFL--------AQAREAGAAAALAHGGLEAAGLAGIEVPDSLAALGALATAWRARFALPL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GK++V   V  I +     +      +T  +F         S       +   
Sbjct: 108 IAVTGSNGKTTVTQMVASILRAHAGEAA----LATRGNF-------NNSIGLPLSLMRMT 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +   V  + +  +  G         +       N  R+H ++  T +A       +   L
Sbjct: 157 AQHRVAVLEMGMNHPGEIAELAAIGQPTVALVNNAQREHQEFMHTVEAVARENGSVLLSL 216

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P +  A+  A D Y+    + A    C +      G  +H +    + +  Q T+    
Sbjct: 217 -PADGVAVFPAGDTYTPLWRELAAARQCLLFGESADGAQVHARDALWLGDAWQFTLVTPE 275

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-- 355
            +      + G   V NAL AA    A G+  A +   L     V GR   +G + +G  
Sbjct: 276 GEAPVRLHIAGRHNVRNALAAAACAQAAGVPLADIARGLSVFEPVQGRSRALGVSVQGRT 335

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADI 412
             +  D Y    +S+   ++ +R + + +++V+   G   DQG       G +A  L   
Sbjct: 336 VTVIDDSYNANPDSVAAAIEVLRELPAPQLLVLGDMGEVGDQGPQFHAEAGALARSLGIA 395

Query: 413 AIVTDDNP-------------RSEDPEKIRAEIIHGIP---GFIEKGNRI---EAIRTAI 453
            + T                   ED   ++      +P     + KG+R    E +  A+
Sbjct: 396 RLFTLGAQSTSAATAFGAGARHFEDMASLQQAACAALPEVGSILVKGSRFMKMEQVVQAV 455

Query: 454 EMLNKQD 460
           E   K D
Sbjct: 456 EAAGKDD 462


>gi|262340887|ref|YP_003283742.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272224|gb|ACY40132.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 426

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 130/384 (33%), Gaps = 41/384 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + + ++S+ ++ G IF+A+ G   DG+ F  +AI+ GA   +V            + S  
Sbjct: 4   SGIETNSKKVKKGSIFIALKGKNFDGNQFAHEAISNGAMIAIVDDK--------RVFSCR 55

Query: 91  PILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLS------ 143
            I+ VD++  FL   A     +     I+A+TG++GK++     + I  R          
Sbjct: 56  KIIYVDDSLHFLQKLAMYHRYQLRHIPIIAITGSNGKTTTKELTKTILSRKYEKVHFTKN 115

Query: 144 --SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  IG   TI S   + +                    ++ + + A+           
Sbjct: 116 NLNNHIGIPLTILSMPINTQ--------------------ISVIEIGANHEKEIDKMCSI 155

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           IK   G  TN G+ H++  ++ +     K+ L+  L   +    +  DD      + ++ 
Sbjct: 156 IKPDYGYITNFGKAHLEGFKSIEGIIRGKLELYNFLKKNKKVVFVNGDDPIQ---LDKSI 212

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                + S     K     K         +   +   +      L G + +YN   A  +
Sbjct: 213 GMKRYIFSEKEDKKSNVKIKYLWNQVGCDLKSILYVDNTKISSSLIGNYNLYNIASAISI 272

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                I    + + +E+      R + +   +    I   Y     S+   L        
Sbjct: 273 GKYFKISLEKIKKAVEEYIPKNHRSQIMNKKNTKI-IIDCYNANPTSMIKALTFFNNNIK 331

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI 405
           G  I + G   +          KI
Sbjct: 332 GNKIAILGDMLELGFYSNHEHEKI 355


>gi|118581688|ref|YP_902938.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
 gi|166224713|sp|A1AU60|MURC_PELPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118504398|gb|ABL00881.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
          Length = 460

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 137/412 (33%), Gaps = 44/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            + +V+SSA    +          + V+        L   +         +A+ GT GK+
Sbjct: 65  VDVVVISSAVHDDNPEVVEAKRLHVPVIPRAEMLAELMRMKFG-------IAIAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    I   +G     I PT  I                    L+       + +  
Sbjct: 118 TTTSMAASILGHAG-----IDPTIVIGGKLNAIGTNAQLGQGKF-LLAEADESDGSFLV- 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAII 246
                         +       TN+  DH+D++    +   +  ++ F   +P    A++
Sbjct: 171 --------------LSPTIAVVTNIDADHLDHYSGGIEEIKDTFVK-FINKVPFYGMAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD   + ++ R      R ++ G      I    V         T   +G    +  F
Sbjct: 216 CLDDPNIRAILPRVKK---RYMTYGLSSQADIRATHVRHDGFTTSFTAHFKGYRLGEISF 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NA+    + + + +  + + E   +   V  RF   G   RG  +  DY H
Sbjct: 273 TMPGAHNVLNAMACIAVALELDVPFSAIQEGFSRFGGVGRRFTIKG-EPRGITVVDDYGH 331

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++  L   R      RI+ VF         +       A   AD+ I+TD     E
Sbjct: 332 HPAEIKATLAAARLGWPERRIVAVFQPHRYTRTHELFGEFVTAFYDADVLILTDVYAAGE 391

Query: 424 DP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P      E++  EI+ HG        NR    +  + ++ + D+++  G G
Sbjct: 392 QPVEGATAERLSQEILRHGQKDVTWIPNRELIPQHLLGIVKEGDMVITLGAG 443


>gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
 gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
          Length = 509

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 152/444 (34%), Gaps = 84/444 (18%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R I+ G +F+A+ G   DGH F+ +A  +GA A +VS              + 
Sbjct: 27  SNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAVAAIVSEGK---------YKSF 77

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++V +T K L   AS           ++AVTG+ GK++    +  +  + G+S    G
Sbjct: 78  PLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHASEG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +              +  YL                +  +  G  +            
Sbjct: 138 NLNNNIGLPLTILKAPKNCQYLILE-------------MGMNKVGEIKELSKISNPNIAV 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------ 262
            TN+   H +   +      AK+ +    +      ++  D+ Y   +   A+       
Sbjct: 185 ITNIEPAHTENFSSLFDVAQAKLEILYG-MKNNGTLVLSRDNKYYDYLSSHANRNVISFG 243

Query: 263 -------------------------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--- 294
                                    +   VL     G  I  + +  ++NK  +  S   
Sbjct: 244 KDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIPASRAG 303

Query: 295 ----------------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                            + +  +    + GE   Y+ L  A +  ++G+D + +   L+ 
Sbjct: 304 MTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLPLALKN 363

Query: 339 LHVVPGRFEF--VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
             V  GR     V  N +   +  D Y  +  S++  +K + T ++ R + + G   +  
Sbjct: 364 FSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRKVALLGDMLELG 423

Query: 396 QGKRPIMGKIALDLADIAIVTDDN 419
                    +      + I+T++N
Sbjct: 424 DESIEFHTDL------VKIITENN 441


>gi|294787089|ref|ZP_06752343.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315226742|ref|ZP_07868530.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
 gi|294485922|gb|EFG33556.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315120874|gb|EFT84006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
          Length = 525

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/518 (15%), Positives = 168/518 (32%), Gaps = 87/518 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +       +L+   S       + +++   +DSR ++ G +FVAI G + DGH ++
Sbjct: 4   MTLAETAQAMSGKLLVFESASASIDSQAQVDSAVTDSRQVRPGSLFVAIKGERVDGHAYL 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---------YG 111
            QA A        + A +         ++ P ++V++T + L   A              
Sbjct: 64  EQAAA--------AGAVAAVVDHEVAGASLPQILVEDTVRALGFLARHNIEKRRSLAGQA 115

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           + P  I+ +TG+ GK++    ++ +    G +    G  +                 +L 
Sbjct: 116 RTPFTIVGITGSVGKTTTKDLIRALLSPLGPTIAPQGSFNNEIGLPLTALQVGEETRFLV 175

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          + AS+ G   +     +        +G  H+    + +    AK 
Sbjct: 176 AE-------------MGASAVGEIAYLTTIARPDLAVELKVGVAHLGGFGSVENIRQAKS 222

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMK-----------------------RAHNAGCRVL 268
            L   L P    AI+  +D   + + +                        +  A   V 
Sbjct: 223 ELVRAL-PPSGLAILNENDENIRLMPEMTGVRNLLWFGLHEDRPDEDRSDESETAYPSVP 281

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S     +    +      ++   T+   +G        LPG   V NAL A  +  A+ +
Sbjct: 282 SAMSAAEIYGDQVQVDDQDRPSFTVHFPDGTGCPMSLALPGRHNVMNALAAICVAYAMDL 341

Query: 328 DSALVLEHLEKLHVVPGRFE------FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +  +   L                 F   +     +  D +    +S++  L  +    
Sbjct: 342 PTEAIAGILAHQGAQSPHRMDIRQVPFRPDSDLAFTLIDDSFNANPDSMKAGLDGLAAWH 401

Query: 381 S--------GRIIVVFGCGGDRDQGKRPIM---GKIALDLADIAI-VTDDNPRSEDP--E 426
           +           + V G   +    ++ +    G  AL +AD+ I V  +    E+P  +
Sbjct: 402 AESRTRDERPYRVAVLGSMLELGPNEKELHQRMGAYALSVADMVIAVGSE----EEPHLD 457

Query: 427 KIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVL 462
           ++  + + G        ++ EA  I          D++
Sbjct: 458 ELAHDFVLGAD-----HDQKEAGSIHWVHSAEQAADLV 490


>gi|261337529|ref|ZP_05965413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum
           DSM 20093]
 gi|270277931|gb|EFA23785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum
           DSM 20093]
          Length = 524

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 106/523 (20%), Positives = 196/523 (37%), Gaps = 51/523 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+++I +D    +N   +    +R++ +  ++  +  +  G   V   G       ++  
Sbjct: 18  LREIITRD-GWTLNPSDV--PGYRDQ-VTGLTYSTTQVVPGSALVC-KGRFR--AEYLQD 70

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
              Q     V +  YS         +  P L+V+N  + LSL A+  Y    + +  + +
Sbjct: 71  IDQQRLAWYVATEDYSA-------YTAAPGLIVNNATQALSLLAAAYYDYPQDELTVIGI 123

Query: 121 TGTSGKSSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++ A F Q +         + F             ++ LTTP  +   + +   
Sbjct: 124 TGTKGKTTTAYFTQAMLNALSGGKCALFSSNDNCIDGVHYVESDLTTPESLDAFRMMRQA 183

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
              G+ ++ +E SS     +R+ G+      F N+  DH+    H T + Y   K ++  
Sbjct: 184 REHGMEYLVMEVSSQSYKVNRVYGLHFDVAGFLNISPDHVSPIEHPTFEDYLYCKRQIIA 243

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----------CAI 285
                 S  ++ AD  + + +++ AH     V   G +   +                A 
Sbjct: 244 N----TSALVLGADCDHVRLLLQDAHLHDVPVTLFGTEDSTLPDDGQSTPLGLVTVGAAD 299

Query: 286 HNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVV 342
               +  ++V G         +PG+F   NA  A  L  A G+     +  + L+++  +
Sbjct: 300 ERHDRFDVTVFGDPAGSIALAMPGDFNYVNAAAAIALIEAAGVPFNADVAYKALDEVR-I 358

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKR 399
            GR E    +     + VDYAH   S+  +L  +          I ++ G  G +   +R
Sbjct: 359 AGRMETTRDDESNTVVIVDYAHNGISVTSVLDYVDLQWGQEQPSITLITGSAGGKALDRR 418

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEM 455
             M + A    D  I T D+P  E  + I   +   I     +     +R +AI +AIE 
Sbjct: 419 EEMVRAAEQRIDHFIFTTDDPNEEPVQDICEHMASYIQAPDVRHSIILDRAQAIASAIEE 478

Query: 456 LNKQD-----VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               D     V++  GKG E              D  ++  +L
Sbjct: 479 ARADDSGRLHVILALGKGEERWIKAHGKHMPYEGDDHVVARLL 521


>gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
 gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
          Length = 462

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 146/375 (38%), Gaps = 26/375 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S++S  I+   +F+A++G + DGH FI QA+  GA+A++V+   S+         N
Sbjct: 26  INTISTNSNEIKKKCMFIALIGKRYDGHDFIEQAVMAGAQAVLVNRYVSV---------N 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +T   L   AS L  +    ++A+TG+SGK+SV +    I +  G        
Sbjct: 77  VPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSSGKTSVKNMTVSILKNCG-------- 128

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T+ S   +       PI L   L+         + + ++  G        +       
Sbjct: 129 --TVVSTQGNQNNLIGVPITL---LNLTYQSDFAVIELGSNQLGELNKLSKIVAADVALV 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+   H+   ++ ++    K  +F  L       +I  D                   S
Sbjct: 184 NNIFISHLSGFRSLKSIQQEKGEIFSGLAC-NGQVVINGDSNAVFMWNSMLQLKKRWWFS 242

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +  + +       +C   +  +  +S           + G   V NAL A+ L  ++G +
Sbjct: 243 IYVKKEMDFFANNICIYPHGVRFILSSPYGVAPVFLSILGRHSVSNALAASALAFSVGAN 302

Query: 329 SALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            + ++  L+ +  +PGR   +   + +   +   Y     S+ +   N+ ++  G  I+V
Sbjct: 303 LSEIVYGLQNIQPLPGRLYPILLNDGKLLLLDDTYNSNVGSM-IEAINVLSVMPGYRILV 361

Query: 388 FGCGGDRDQGKRPIM 402
                +  +    I 
Sbjct: 362 ISDMLELGERYVAIQ 376


>gi|291460928|ref|ZP_06025930.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380013|gb|EFE87531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 613

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 158/412 (38%), Gaps = 46/412 (11%)

Query: 8   YKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            KDF E++ +  +  + + E     ++  V  DSR +  G +F AI     +G+ +I   
Sbjct: 177 LKDFSEILKREKLNELLFEEFSKKVQVKNVVMDSRKVTEGSLFFAI----NNGNSYIKDV 232

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  ++  +   + +          I+ V +T   +   A++   K    ++ +TG+
Sbjct: 233 LDKGASLVIADNTDVVDER---------IVKVSDTVATMQDLATKYRNKLDIQVIGITGS 283

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +  +            T  ++                 L+    +   
Sbjct: 284 NGKTSTKDIVYSLLSKKAK------TLKTEGNYNNHIG-------LPYTLLNVTDEEKFV 330

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  +++ 
Sbjct: 331 VLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKEDT- 389

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  DD Y  ++          V  +G+  +  +  +     +K     +++GK++   
Sbjct: 390 -FVCGDDVYLAKL---------DVNKIGFNEENNYRIESYEFSDKGS-KFTLDGKEYQM- 437

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N  +A  L   IG+    + E L+ + +   RF+ +    +   I   Y 
Sbjct: 438 -SLLGKHNISNTAIAIELAKKIGLGEEEIEEGLKDIKISGMRFQEIRV-GQDIYINDAYN 495

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +  S+   +  +  I +    I + G   +  + +     ++   L D  I
Sbjct: 496 ASPTSMMAAIDTLNEIYNDKYKIAILGDMLELGEEEVKYHVEVLNYLLDKKI 547


>gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 550

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/509 (18%), Positives = 163/509 (32%), Gaps = 79/509 (15%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E     VSSDSR I+AG +FVA+ G K DGH F+ + + +GA  +V+ S          +
Sbjct: 53  EAVFRLVSSDSRTIEAGDLFVALRGEKFDGHRFVAEVVRKGAAGLVLESPPEEPLPVPVV 112

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                     +T + L   A     +     +LA+TG+SGK++V      I ++      
Sbjct: 113 LV-------ADTLQALGDLAHYRRMQMKGLKVLAITGSSGKTTVKEMTAAIMEQGRGRQR 165

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +     +++                  L+  +      + +  +  G      +  +  
Sbjct: 166 VLKTRGNLNNLI----------GLPLSLLAVDAHHQYAVLEMGMNRFGEIARMAEIAQPD 215

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+   H+           AK  LF  + P  +  ++  DD     +  +      
Sbjct: 216 IACITNVQEAHLAGLTDVAGVARAKGELFHGMRPW-TTLVVNRDDPRVWRLAGKLPQRRI 274

Query: 266 -------------RVLSVGYQGKFIHLKKVCAIHNKQQV--------------------- 291
                        R+ S G +G    L                                 
Sbjct: 275 TFGRKPGTTVRATRLRSRGEEGMSFTLTIADVTDYGGHGVSGHRVPQVVASGPAPRTSVR 334

Query: 292 -------------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                         +  +G          GE  V NAL AA L +A G+  A ++  LE 
Sbjct: 335 KPGRSPQDAVPCDRLLADGWQGRVHIAALGEHNVQNALAAAALALAAGVSPAEIVAGLEG 394

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-----VFGCGGD 393
                 R       +    I   Y    +S+   L+ +  +   R +V     +   G  
Sbjct: 395 YRPFAKRLRIQPFVAGLKLIDDSYNANPSSMLAALETVHNLRRNRKVVAILGDMLELGSH 454

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKGNR----IEA 448
                R I  ++A    D  +   +          RA +  G +   ++K       +EA
Sbjct: 455 GPAAHRFIGEQVARLGFDYLLTVGEFAGETARAARRAGMDAGQVRACLDKKEVGAWLLEA 514

Query: 449 IRTAIEMLNKQDVLVV-AGKGHETVHIVT 476
             TA   L   D++++ A +G +   I+ 
Sbjct: 515 --TAKGRLKNDDLVLLKASRGMQMETIIE 541


>gi|153006723|ref|YP_001381048.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp.
           Fw109-5]
 gi|166222952|sp|A7HH68|MURC_ANADF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152030296|gb|ABS28064.1| UDP-N-acetylmuramate--alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 458

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 139/420 (33%), Gaps = 40/420 (9%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q + Q  + +V SSA    +          I ++    + L+      YG    
Sbjct: 59  GH--AAQHVEQ-VDVVVTSSAVRKDNPEVVEARRRKIPIIPRA-EMLAELMRLKYG---- 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ G+ GK++  S    +   +GL    +     +++F  + +L             
Sbjct: 111 --VAIAGSHGKTTTTSLAAHLLAHAGLDPTAV-VGGKVNTFGSNAKLGRGD--------- 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA            I       TN+  +H+D+ +T++A        F 
Sbjct: 159 --------YMVVEADESDGS---FLHIPPTIAIVTNIDPEHLDHWKTEEALRKG-FLDFV 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AI+  D    + ++    +         +Q  +       + H  +      
Sbjct: 207 NRVPFYGRAILCIDHPTVQSLLPEVESRYV-TYGESHQADYRADGIEVSGHAVRFDAFRR 265

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   L G     NAL    +   +G+ + +  E L     V  RF   G    G
Sbjct: 266 DEPLGRFEVRLVGRHNALNALAVVAIADEMGVPADVTREALASFGGVQRRFTVRGEAG-G 324

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DY H    ++  L   R     R++ +F                 A + AD+ ++
Sbjct: 325 VTVVDDYGHHPAEVKATLLGAREAFHRRVVCLFQPHRYTRTRDLLPEFATAFNDADVLLL 384

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           TD     E+P      E +   I       +    R E  R A + +   D+++  G G 
Sbjct: 385 TDIYAAGEEPIPGATSEALAEAIRACGHRDVSLVPRPELARAARQRVRPGDIVLTLGAGD 444


>gi|332876573|ref|ZP_08444333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685406|gb|EGJ58243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 464

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/385 (15%), Positives = 121/385 (31%), Gaps = 48/385 (12%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +D+R I    I+ A+ G   DG+ F  +A+ +GA   V+ +     D          
Sbjct: 28  GVCTDTRKIVPNSIYFALKGASFDGNTFAAEALNKGATLAVIDNPAYQIDERT------- 80

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+V +    L   A+         I+ +TG++GK++    ++ +   +       G  +
Sbjct: 81  -LLVPDVLLALQELANYHRRTLKTLIIGITGSNGKTTTKELIKSVLSEAMQVVATEGNLN 139

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P           +   G  H    A     D  R+   +   G  T+
Sbjct: 140 NAIGVPLTLLSIKPETDI------AIVEMGANHPHEIA-----DLSRIA--EPDYGYITS 186

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L   +   I  ADD   + +++        V S G
Sbjct: 187 IGKAHLEGFGSFEGVIKTKAELYDYLKAHQKTIIYNADDTLQQSLVE----GYANVYSFG 242

Query: 272 YQGKFIHLKKVCAIHNKQ----------------------QVTISVEGKDFDFLFPLPGE 309
              +        A+                            TI         +  L G 
Sbjct: 243 TTDEVNVPVACVAVQPVSIRFSEGSVLQTEEPATKDLPYIDTTIKGFSGATIAVSHLMGS 302

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           +   N   A        + +A +   +EK      R + +   +    +   Y    +S+
Sbjct: 303 YNFNNIAAAVAFGRYFRLPAAAIKRGIEKYVPHNNRSQLMAWGTN-TLLLDAYNANPSSM 361

Query: 370 EMILKNIRTITSGRIIVVFGCGGDR 394
              + N+ T+ +    V+       
Sbjct: 362 AAAIHNVLTMPNFTKKVLILGDMFE 386


>gi|158834056|gb|ABW81833.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834058|gb|ABW81834.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834060|gb|ABW81835.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834062|gb|ABW81836.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834064|gb|ABW81837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834072|gb|ABW81841.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834088|gb|ABW81849.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834090|gb|ABW81850.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834092|gb|ABW81851.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834098|gb|ABW81854.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834100|gb|ABW81855.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 121/250 (48%), Gaps = 7/250 (2%)

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DYH     
Sbjct: 12  SAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKK 281
           Y  AK  LF  L  +    II  DD   +  +    NA        +  G QG ++  +K
Sbjct: 72  YEIAKKSLF--LDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWLSAQK 129

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +    N   +         +   PL G F V N L+     +A+      +L+   KL  
Sbjct: 130 IQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQP 189

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKRP+
Sbjct: 190 IPGRMEVFKKVGR-PTVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKRPL 248

Query: 402 MGKIALDLAD 411
           MGKIA  LAD
Sbjct: 249 MGKIAETLAD 258


>gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris RCH1]
          Length = 478

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 139/407 (34%), Gaps = 30/407 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L   +  E +   +I   Q  +     V SDSR +  G +FV I G + DGH F    + 
Sbjct: 3   LTPNEMRESLGAGAILGAQG-DATFAAVRSDSRKVAPGDLFVCIRGERFDGHDFAADVVR 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  ++        +  +    +  I+VVD++ K L   A+    +    ++ VTGT+G
Sbjct: 62  QGARVLIAERDPFNGECPSA---DVTIMVVDDSVKALGRLANLHRMRSKARVVGVTGTAG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   + Q+                    A++              L    ++    +
Sbjct: 119 KTTVKELLAQVL-------------GVRGDTARNPLNLNNQIGLPLSMLEATGNESFWVM 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S           ++   G   N+G+ H+     +      K RL   L  +    +
Sbjct: 166 EAGISQPQDMDELGAVLRPDIGLVLNVGQGHVAGLGDR-GVAYYKSRLLAHL-AEGGTGL 223

Query: 246 IYAD-DAYSKE---VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGK 298
           + AD D   +E   V +R          VGY+  +       A  +     +  + ++G 
Sbjct: 224 VCADYDDLVREARSVCRRLQFFSASGRGVGYRAAYDGPVADAAGSDGGVRGRYRVWLDGS 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + + P  G F   N    A      G+    +   L +   V  R  F      G   
Sbjct: 284 VHEVVAPFRGAFGAENVAAVAAAAHLCGLSGEEIAAGLAE--AVLPRQRFACATVGGFVC 341

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
             D Y     S   +++ +  + +G   +VF  G   + G+      
Sbjct: 342 IDDTYNANPLSSARMVEAVTEMAAGG-PLVFVLGEMLELGEEAADAH 387


>gi|119897171|ref|YP_932384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
 gi|119669584|emb|CAL93497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
          Length = 478

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 101/442 (22%), Positives = 171/442 (38%), Gaps = 23/442 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            + + V +DSR I  G +FVA+ G + DGH F+  A+  GA A +V +    + F+    
Sbjct: 30  VRFSSVGTDSRGIIPGQLFVALRGERFDGHEFVAAALKAGAAAAMVDA----RGFTEFGD 85

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++ P+LVVD+TR  L   A+    +    ++ VTG++GK++V     +I +         
Sbjct: 86  ASLPLLVVDDTRLALGTLAATWRARFAIPVIGVTGSNGKTTVKEMCAEILRAQARRDGA- 144

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIA 206
           G  + +++     R    + I L   L  L       V     +H G   +     +   
Sbjct: 145 GDEAVLAT-----RGNLNNDIGLPLTLLELRDHHRAAVIEMGMNHPGEIAYLTGLARPTV 199

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R H+    T       K  +++ L      A++ ADD ++     R  NAG  
Sbjct: 200 AIVNNAQRAHLQGLGTLGEVAQEKGAIYQGL-GAAGVAVVNADDPHAGYW--RDLNAGRP 256

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++S G         +        Q+ I+      +    +PG     NAL AA  C+A G
Sbjct: 257 IVSFGIDQPADVAGECTLHGLGSQLHIAAPQGRGEVELQVPGLHNASNALGAAAACLAAG 316

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           +     LE L       GR +   +  +G  I  D Y    +S+   +  + + T G   
Sbjct: 317 VVFEAALEGLALYEGTRGRLQR-RSGPQGAVILDDSYNANPDSVRAGIDVLAS-TPGHTF 374

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +V G  G+  Q    +  +I        I        E           G   F    + 
Sbjct: 375 LVLGDMGEVGQTSAQVHDEIGGYAKSKGIDGL-YALGEASAIAVRNFGEGAHHF----DS 429

Query: 446 IEAIRTAIE-MLNKQDVLVVAG 466
           +EA+  A+   L+   V++V G
Sbjct: 430 VEALVAALAPRLDADAVVLVKG 451


>gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5]
 gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5]
          Length = 445

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 127/386 (32%), Gaps = 38/386 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   L    +      +   S DSR I+ G +F+ + G K D H FIP A  +GA  ++ 
Sbjct: 8   LAKILKGSLVGSPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGAVGVIS 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                       +     ++ V +T + L   A          ++ V G++GK++    +
Sbjct: 68  EREVD-------VPPGKFLIKVRSTLESLREIAKFKRENFKGKVIGVAGSAGKTTTKELL 120

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +    G      G  ++           +    +                   AS  G
Sbjct: 121 SHLLSIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEH-------------GASKRG 167

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++ ++  K      T LG +H++   + +        +F             +D+ Y+
Sbjct: 168 EIKNLIEITKPHVRLITTLGEEHLEGFGSLEGVIWGNAEMF----------CRISDNFYA 217

Query: 254 KEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               K         + +S G +G+   L+      +++ V+  VEG+ F      P    
Sbjct: 218 VIPGKFLDTLFFLPKKISFGERGE---LQAQNVEVSEKGVSFEVEGEKFFISV--PSLGL 272

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L    +   +G       E L++   V GR +          I   Y     SL  
Sbjct: 273 VENILACFCVLKVLGFTLKEFKEALKEFSPVEGRMKVFNLK-NFILIDDTYNANPVSLRN 331

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQG 397
            +K++      ++ ++       +  
Sbjct: 332 AIKSVGAFKRDKVFILGDMLELGEHS 357


>gi|313205082|ref|YP_004043739.1| udp-N-acetylmuramoyL-tripeptide--d-alanyL-d-alanine ligase
           [Paludibacter propionicigenes WB4]
 gi|312444398|gb|ADQ80754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paludibacter propionicigenes WB4]
          Length = 434

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 143/403 (35%), Gaps = 39/403 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR   +G +F A+ G+  D + F   A+  G    VV  A    D           
Sbjct: 13  ICTDSRVCPSGSLFFALKGDNFDANAFALSALKNGCSYAVVDEAEYAIDE--------RF 64

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V+N  + L   A+    +    ++ +TGT+GK++    +  + +      F  G    
Sbjct: 65  ILVENVLESLQELATYHRRQLGTKVIGITGTNGKTTTKELIAAVLKEKYNILFTQG---- 120

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   L       +  + + A+     +   +  +   G  TN+
Sbjct: 121 ------NLNNHIGVPLTL---LQLKPEHEIAVIEMGANHPEEIKALAEIAEPDYGIITNV 171

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-----RV 267
           G  H++   + +     K  L+E +        I  ++ +   ++K A ++G       V
Sbjct: 172 GMAHLEGFGSFEGVKKTKRELYEYIYKAGKAIFINKNNEH---LLKMAVDSGFVVNNENV 228

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +S           K         + +     +   FD    L G +   N L A  +   
Sbjct: 229 ISYSLDKNSSSRIKAVVTDCSPFLEMKCFIGKNDSFDISTKLIGAYNAENVLAAVTIGEY 288

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383
            G++   +   LEK +    R +   T +    I   Y     S++  + N   +   G+
Sbjct: 289 FGLNKEELTAGLEKYNPQNNRSQLTITENNK-LIIDTYNANPTSMKAAILNFAQMNVEGK 347

Query: 384 IIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVTDDNPRS 422
            +++       +Q      G I       LAD+ +V + N RS
Sbjct: 348 TLILGDMLELGEQSSAEHQGIIDLLKQNKLADVLLVGN-NFRS 389


>gi|33862674|ref|NP_894234.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634590|emb|CAE20576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 465

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 152/458 (33%), Gaps = 44/458 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ +  + +DSR +  G  FV +VG   +GH F+ QA+    +A VV+           +
Sbjct: 26  DQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEVQAAVVARKDHHP-----V 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P  +V++T +           +    ++AVTG++GK++    ++      G     
Sbjct: 81  PEGLPHWIVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTTRELIRSALTPLGEVLAS 140

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G                         L   S  G   V +     G  +      +   
Sbjct: 141 AG-------------NNNNDVGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCTQPDV 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  H+    ++ A  +AK  +    L      +I A D   ++ ++R      R
Sbjct: 188 AVITNIGNAHVGRLGSRAAIASAKCEI-TTCLKPRGVIVIPAGDLLLEDALERIWRG--R 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQV--------------TISVEGKDFDFLFPLPGEFQV 312
           V+ V  Q          A  +++ +               + +EG  +    PL G    
Sbjct: 245 VIRVAVQDNQQLEPPEIADLHRRPLPKADLVGCVDLAKGELLLEGNAY--TLPLEGMHNA 302

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEM 371
            N ++A  +   + +      E L  L V                +    Y  +  +++ 
Sbjct: 303 CNLMLALAVARELDV----CKESLSNLKVDVPGGRSRRLKVGNFTVLDETYNASPEAVQA 358

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +  I  GR   V G   +       +  ++A     + +       +    +  A 
Sbjct: 359 ALE-LLAIQPGRHFAVLGTMLELGDQSVALHRQVAERAVQVGLDGLVVVAAGAEAEAMAT 417

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
               +P      N  +A +     L   DV+++ A +G
Sbjct: 418 AAGSLPHLAVVANPEQAAQPLQAWLEAGDVVLLKASRG 455


>gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 465

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 150/453 (33%), Gaps = 36/453 (7%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  +   V +DSR   AG ++VA  G   DGH F+  AI +GA A++           
Sbjct: 18  GPDACVTGTVVTDSREASAGSLYVARRGENADGHAFVHGAIERGAVAVIAERELEEA--- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYG----KHPENILAVTGTSGKSSVASFVQQICQR 139
                    ++V+++ + L   A         +   +++A+TG+ GK++    + QI   
Sbjct: 75  ------VAQIIVEDSTRALGDLARAHVDALRSRGTLDVIAMTGSVGKTTTKDLLLQILSE 128

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +                             AL    +     + + AS  G   +  
Sbjct: 129 DGPTVA-------------PKLSFNNEVGLPLTALQADETTRHLVLEMGASGPGHISYLT 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +         +G  H+      +    AK  L     P   P I+  DD   + +   
Sbjct: 176 DIVSPDVAIELCVGHAHVGGFGGFEGVAAAKAELIAGTRP-GGPVILNTDDPNVEAMAPM 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A     R  ++G     +  ++V     ++   T+            L G   V NAL A
Sbjct: 235 ATGPIVRFSALGEPRADVRAEEVRTDRADRASFTLVTPRGSAPVSLALVGRHHVSNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374
           A   + +G+D   V   L     +      V           +  D Y    +S+   + 
Sbjct: 295 AAGALTLGMDLDTVAAVLSGARALSPHRMDVHDLDIEGTALTLIDDSYNANLDSMRAGIA 354

Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            + +I      I V G   +  +  R +  ++   +AD  + T     +     +  E  
Sbjct: 355 ALASIGRDAVRIAVLGEMLELGEESRSLHEQVGALVADAGVDTLIGLGAHSHYYL--EGA 412

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            G+       +  +A R       +  V++V G
Sbjct: 413 SGVANRTVASDPSDAARLVARFAEEGAVVLVKG 445


>gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
 gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
          Length = 465

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 166/459 (36%), Gaps = 48/459 (10%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  +   V +DSR  QAG ++VA  G   DGH F+  A  +GA A++V          
Sbjct: 18  GNDVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHE------- 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQR 139
             +      +VV+++ + L   A     K       +++A+TG+ GK++    + QI   
Sbjct: 71  --VDEAVTQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSE 128

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +             + +N +  P  + LA   +         + + AS  G   +  
Sbjct: 129 DGPTVAP--------KLSFNNEVGLPLTVLLADETTRHL-----VLEMGASGPGHITYLT 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +         +G  H+      +    AK  L +   P   P I+  DD   + +   
Sbjct: 176 DIVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKGTRP-GGPVILNTDDPNVEAMAPL 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A     R  + G +   + ++ V     ++   T+     +      + G   V NAL A
Sbjct: 235 ATGRVIRFSASGNERADVVVRDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTSNSLEMILK 374
           A   + +G+    V   L +   +      V      G     I   Y    +S+   + 
Sbjct: 295 AAGALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIA 354

Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            + +I    + I V G   +  +  + +  ++   +AD  + T           + A+  
Sbjct: 355 ALASIGRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLI--------GLGADAH 406

Query: 434 HGIPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAG 466
           + + G  E  +R       +A R A+E      V++V G
Sbjct: 407 YYLEGAPEVPHREVAADPQDAARLALEHAEDGAVVLVKG 445


>gi|206901118|ref|YP_002250970.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
 gi|254765999|sp|B5YEL2|MURC_DICT6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206740221|gb|ACI19279.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
          Length = 464

 Score =  170 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 146/403 (36%), Gaps = 43/403 (10%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
               +++      N PIL   +    L+           +  + V G  GK++  S +  
Sbjct: 74  PPDNEEYVYAKSKNIPILHRSDLLAELTK---------EKKSIIVGGAHGKTTTTSMIAL 124

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + +     + +  PT  +    +D                YL ++G         S G  
Sbjct: 125 VLE-----NNKTDPTIIVGGELEDIGGNAKLGSG-----EYLVAEGDE-------SDGSI 167

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +       TN+  DH+DY++  +   +  +++ E+ +P++   ++  D    ++
Sbjct: 168 LK----LNPYILVVTNIDNDHLDYYENIENIKSTFLKVIEK-VPEDGYVLLNLDCKNIRD 222

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYN 314
           ++ +  +   +  + G+         +    +  +  +             +PG   + N
Sbjct: 223 IIGKIKDK--KYYTYGFSNADFTADNIVLNSSGSEFDVYFRNVKLGRVKLKVPGRHNILN 280

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A G+   +G+D    ++ LEK H V  R +F G       ++ DY H    +   L+
Sbjct: 281 SLSAIGISYILGLDFEQTIKALEKFHGVQRRIQFKGVIENDVLVFDDYGHHPTEILATLE 340

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKI 428
            +R + + R++VVF                 AL L+D+ I+ +     E P        I
Sbjct: 341 TLR-LYNRRLVVVFQPHRYTRTYFLSKEIADALSLSDVVILMEIYSAGEKPIPGVSSRNI 399

Query: 429 RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             EI    P        + +EA      +L   D+L+  G G+
Sbjct: 400 YDEIKKKYPELEIYLVNDIVEAATKVKSVLRDGDLLLTLGAGN 442


>gi|51246749|ref|YP_066633.1| UDP-N-acetylmuramate-alanine ligase [Desulfotalea psychrophila
           LSv54]
 gi|59798231|sp|Q6AJ54|MURC_DESPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50877786|emb|CAG37626.1| probable UDP-N-acetylmuramate-alanine ligase [Desulfotalea
           psychrophila LSv54]
          Length = 459

 Score =  170 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 152/435 (34%), Gaps = 49/435 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA  +V SSA +  +          I V+        L   + +G    
Sbjct: 56  GHQ---AASCAGASVVVTSSAVAEDNPEVVQAREDKIPVIPRAEMLAELMRLKTFG---- 108

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV G+ GK+S  S +  +  ++G     +     + SF  + +L             
Sbjct: 109 --IAVAGSHGKTSTTSLIGCLLSQTGFDPTIV-VGGKVDSFGGNAKLG------------ 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G   V+    S G        +  +    TN+  +H+DY+   +      +  F 
Sbjct: 154 ----EGDFLVAEADESDGSFLK----LSPVLEVVTNIDLEHLDYYTDIEHIKETFLS-FI 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
           + +P    AI+  DD     ++ +      R+++ G      +    +     +    + 
Sbjct: 205 DKIPFYGAAIVCLDDENVAAILPQVQK---RLITYGLTPQADVSADNLRFAAGRSTFRVR 261

Query: 295 VEGKDFDFLFPLPG-EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+    +   P     VYNAL A  + + + I    +   L     V  R +  G   
Sbjct: 262 AAGEVLGEISVFPSGTHNVYNALAAVAIGLELEIPFGKIATALASFGGVQRRMQHKG-EG 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +G  +  DYAH    +   LK I+      R++V+F               K     AD 
Sbjct: 321 KGITVIDDYAHHPTEIRASLKAIKETWPEKRLVVLFQPHRYSRTQALFEEFKTCFHQADC 380

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVA 465
            I+TD    SE P      E +   I      +      I ++ T +   L + D++V  
Sbjct: 381 LIMTDIYEASESPIEGVSTEILLEAIKAHGQRYTRHIPEIASLATEVMPNLREGDLVVTL 440

Query: 466 GKGHETVHIVTNGEK 480
           G G+    IV  GE+
Sbjct: 441 GAGN----IVQAGEE 451


>gi|139437201|ref|ZP_01771361.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
 gi|133776848|gb|EBA40668.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
          Length = 474

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 133/395 (33%), Gaps = 23/395 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++       DSR ++ G IFVA  G   DG+ F  +A+  GA A+V++     +  S   
Sbjct: 23  DQVCRGCVIDSRQVEEGTIFVAFPGENVDGNDFASRAVQSGAGAVVMTREPEAELVSLAQ 82

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                IL+ D+  +FL   A     +    ++ +TG+ GK++    +  +  +       
Sbjct: 83  DKGCAILLTDDPEEFLLRLAHTYRLELGCLVVGITGSIGKTTTKDVLAAVLAKRYRVWAT 142

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  + +                L              + +  +     +          
Sbjct: 143 KGNFNNLIGMPLTVLSAPADTEVL-------------VLEMGMNHFHEIERLSQSANPNL 189

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA----DD--AYSKEVMKRA 260
              + +G  HI    +++    AK  + + +        +      DD   + ++   + 
Sbjct: 190 AIVSKIGTSHIGILGSRENIARAKAEIVQGMCAAGDFLPLLVLGGEDDFTPFIRDTFAQP 249

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAA 319
                 +  V    +            +   T+   +G+  D +  +PG   V NA+ AA
Sbjct: 250 AGIDVMLAGVSDDDEVRARDVRVDDEGRPVFTLDFGQGETIDTMLAIPGVQSVPNAVKAA 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            +   +G+    +      L +   R E     S G R+  D Y  ++ S+   L  + +
Sbjct: 310 AVAYRLGVTPEQIDAAFRGLTITGHRQEIKRAKS-GARVIDDSYNASAESMAAGLDLLCS 368

Query: 379 I-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +  +G  + + G  G+       +   +    A  
Sbjct: 369 LSCTGSRMAILGEMGEMGDEAPRMHELVGAYAAAK 403


>gi|294085905|ref|YP_003552665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665480|gb|ADE40581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 483

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 154/453 (33%), Gaps = 45/453 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            I+ ++ DSR  + G +FVA+ G + DGH F+ +A    A A +V++          I  
Sbjct: 28  PIDHITMDSRMCRKGSLFVALPGAQADGHDFLAKAANADASAALVTTP--------DISI 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               ++V +    L+  A     +    ++A+TG+ GK+     +  + +  G S    G
Sbjct: 80  ELAQIIVPDCLAALTALAVAGRNRFKGAMIAITGSVGKTGTKEMLAHLLRACGQSHANEG 139

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAG 207
                            + I L  +L+ L +     +     +H G         +    
Sbjct: 140 --------------NFNNHIGLPLSLAALPAGSQFAIQEIGMNHAGEIAKLTRIARPDIA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-R 266
             T +   H  + ++  A  NAK  +FE +      A++  DD +   + + A +AG  R
Sbjct: 186 MITRIAAVHSGHFESIDAIANAKAEIFEGM--HGGTAVLNIDDPFFPHLSQAAKSAGISR 243

Query: 267 VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++ G        L      ++  ++   + G    F   + G+    N+L       A+
Sbjct: 244 IVTFGSHSDAEFCLLSSRQDNDGMKIEADLSGVPVSFHLGMSGQHWAMNSLGVLACVHAL 303

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGT--NSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           G D     + L     + GR        N     +  D Y  +  S+   L    T    
Sbjct: 304 GEDPVAASDSLASFGDIAGRGACHNGIFNGHAISVIDDSYNASPASMSAALAPFLTGARH 363

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             I+V     +           I   +A         PR      I  +  H        
Sbjct: 364 TDIMVLSDMLELGSHSAAAHDDIVATVA------SIGPRH--VIAIGDDFAHAFAKVAHD 415

Query: 443 GNRIEAIRTA------IEMLNKQDVLVVAG-KG 468
            + I A   A        ++   D + + G KG
Sbjct: 416 CDVIIANDPAHATDMLARLVQADDTIFIKGSKG 448


>gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
 gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
          Length = 825

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 148/399 (37%), Gaps = 25/399 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            E++  L     + ++ +I EVS DSR +      +F A+ G   DGH ++ +   QG  
Sbjct: 14  KEILRILDCKACEVKDFEITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLYEQGVR 73

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             VV+   +         S     VVD     L   A+   G+    ++ +TG++GK+ V
Sbjct: 74  NFVVTGLRA----GFLPLSGANFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTIV 129

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ Q+         + G   +  S+     +              +   G++      
Sbjct: 130 KEWLYQLLSD------EPGIYRSPRSYNSQVGVPLSLLGMDVSTRLAIIEAGISLPGEMG 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
               +       I+   G FT+LG  H +  +++Q     K  LF +            D
Sbjct: 184 KLQAM-------IRPEIGIFTHLGDAHGENFESRQQKLAEKAILFRDCRCIIGREGEALD 236

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 +  R      +++    +   + +++  +  +++ V +  E   F    P P E
Sbjct: 237 -----YIASRLRPDVKKMIWGSGKNATVRVEEKGSTAHERLVAVGYEHVAFTLSIPFPDE 291

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N + A  + +  GI    + E + +L  +  R E     +R   I   Y   + S 
Sbjct: 292 ASFENCMNAVCVLLLEGISPVFIAERVARLQPLAMRMEIKDGINRCVLINDYYNSDAASF 351

Query: 370 EMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIAL 407
           ++ L  +    +GR  +V+     D   G+R +  ++AL
Sbjct: 352 QLALNTLAMQDAGREKVVILSDFVDTGTGERELYREVAL 390


>gi|296394963|ref|YP_003659847.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
 gi|296182110|gb|ADG99016.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
          Length = 475

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 101/453 (22%), Positives = 154/453 (33%), Gaps = 75/453 (16%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLF 105
           +VG+      F    +  G  A+VVS A   +D    + +     P+L        L   
Sbjct: 53  LVGHDARALDF----LDGGPTAVVVSQAAIPEDNPELVEARKRGVPVLYRPQVLAALME- 107

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTT 164
                       + V+GT GK++  S      Q++G   SF +G                
Sbjct: 108 --------GSTRVLVSGTHGKTTTTSLTVAALQQAGLDPSFAVG---------------- 143

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                L +A +            EA        R    +  A   TN+  DH+D+  + +
Sbjct: 144 ---GELGEAGTNAHQGSGNAFVAEADESDGSLLRY---QPDAAVVTNVEADHLDHFGSSE 197

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK------FIH 278
           AY  A    F   +      I+  DD  +  +  RA  AG RVL  G             
Sbjct: 198 AYV-AVFDQFVRQIAPGGSLIVDVDDPGAAALGSRAAAAGTRVLGYGSNQAPAGVLLAAR 256

Query: 279 LKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           L          ++T+  E G +  F   +PG     NAL A    +  G      +  + 
Sbjct: 257 LADWSPHGEGARLTVVFEPGGERVFSIGVPGRHMARNALGAVLAAVFAGASLDGAISGVS 316

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGC 390
               V  RF+  G   RG R++ DYAH    +   L   R +        SGR++VVF  
Sbjct: 317 AFTGVRRRFQLKGAE-RGVRVFDDYAHHPTEVAATLAGARALVTDPDGSCSGRLVVVFQP 375

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI- 449
                          AL+ AD  +V D     E PE        GI G +   +++ A+ 
Sbjct: 376 HMYSRTRLFATEFAAALEAADEVLVLDVYGAREKPE-------AGITGAL-IADQVRAVP 427

Query: 450 -----------RTAIEMLNKQDVLVVAGKGHET 471
                      +TA  +    DV++  G G  T
Sbjct: 428 ARFVPMFSSVAQTAASLAKPGDVVITMGAGDVT 460


>gi|295107917|emb|CBL21870.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus obeum A2-162]
          Length = 459

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 146/421 (34%), Gaps = 50/421 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGT 123
           G  A  +S +  +  ++A I  + P       +    L  ++L G+   N    +AV GT
Sbjct: 60  GQRASNISDSVQVVVYTAAIHPDNPEFACAKEKGLPMLTRAQLLGQIMRNYDTSIAVAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  I  + G     I     + +   + R+      +L +A  Y +S    
Sbjct: 120 HGKTTTTSMLSHILLK-GECDPTISVGGILPAIGGNIRVGQSET-FLTEACEYTNSFLSF 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                                  G   N+  DH+D+ +      ++  R F ELLP +  
Sbjct: 178 F-------------------PTLGIILNMDADHLDFFKDIDDIRHS-FRKFAELLPADGA 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFD 301
            II AD    + V   A N  C+V++ G +    +             T  V   G+D  
Sbjct: 218 LIINADTPKYEMV---AENLPCKVITYGLEHDAEYTASDITYDEFGHPTFHVLHNGEDIG 274

Query: 302 FL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V NAL +      + +D+ ++   L+       RF++ G       I  
Sbjct: 275 ICSLKVPGIHNVSNALASIAAGRLLDLDNEVIFAGLKDFGGTDRRFQYKGKVGE-VTIID 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH    +E  L         +I  VF                 AL LAD  ++ D   
Sbjct: 334 DYAHHPTEIEATLHAAHNYPHKKIWCVFQPHTYTRTKALLPEFAKALTLADHVVLADIYA 393

Query: 421 RSE---------DPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E         D +K   E+       P F E  N        +E   + D+L+  G G
Sbjct: 394 ARETDNLGISSADLQKQIRELGTPCEYFPTFDEIEN------FLLENCTQGDLLITMGAG 447

Query: 469 H 469
            
Sbjct: 448 D 448


>gi|158834066|gb|ABW81838.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 121/250 (48%), Gaps = 7/250 (2%)

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DYH     
Sbjct: 12  SAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKK 281
           Y  AK  LF  L  +    II  DD   +  +    NA        +  G QG ++  +K
Sbjct: 72  YEIAKKSLF--LDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWLSAQK 129

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +    N   +         +   PL G F V N L+     +A+      +L+   KL  
Sbjct: 130 IQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQP 189

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKRP+
Sbjct: 190 IPGRMEVFKKVGR-PTVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKRPL 248

Query: 402 MGKIALDLAD 411
           MGKIA  LAD
Sbjct: 249 MGKIAETLAD 258


>gi|217979592|ref|YP_002363739.1| UDP-N-acetylmuramate--L-alanine ligase [Methylocella silvestris
           BL2]
 gi|254766012|sp|B8ETM5|MURC_METSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217504968|gb|ACK52377.1| UDP-N-acetylmuramate/alanine ligase [Methylocella silvestris BL2]
          Length = 468

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 142/419 (33%), Gaps = 51/419 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   +         +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKRNNPELAYARELRLPVVRRAEMLAELMRLKQC-------VAIAGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  G     I     I+++  ++RL     + +    S            
Sbjct: 120 TTTSLVATLLEAGGFDPTVING-GIINAYGTNSRLGAGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D+  T +    A  R F E +P    A++ 
Sbjct: 168 ---------GTFLKLPADVAIITNIDPEHLDHFGTFENIRKA-FRSFVENIPFYGFAVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD------- 299
            D    +E++ +  +   RV++ G      + L  +       + ++ V  +        
Sbjct: 218 LDHPTVQELVGQIEDR--RVITYGENPHADVRLVDIDLAGGMSRFSVVVRDRKSGGETVI 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              L P+PG     NA  A  +   +G+    +   L     V  RF   G    G  ++
Sbjct: 276 EKILMPMPGLHNALNATAAIAVAHQLGMSPDQIRGALAGFGGVKRRFTRTGEW-NGAIVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAH    +  +LK  R  T GR+I +                    + AD  IV D  
Sbjct: 335 DDYAHHPVEIAAVLKAARASTKGRVIAIVQPHRYTRLHSLFNEFAACFNDADAVIVADVY 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGH 469
           P  E P  I      G+   I+      A+         R   ++    D +V+ G G+
Sbjct: 395 PAGEAP--IEGADRDGLVAAIKARGHRLAMPLARPADLSRLVRQLARPGDYIVLLGAGN 451


>gi|271964376|ref|YP_003338572.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
 gi|270507551|gb|ACZ85829.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
          Length = 468

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 155/437 (35%), Gaps = 57/437 (13%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G +   GH      I    + +VVS+A   S  +    +R    ++     R      AS
Sbjct: 60  GGRVHIGH--AASNIKN-VDTVVVSTAIRDSNPELGEALRQGLRVI----PRAAA--LAS 110

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPS 166
            + G+     +A+ GT GK++  S +    Q+ G   S+ +G     +    D       
Sbjct: 111 VMAGR---TGVALAGTHGKTTTTSMLTVALQKCGADPSYCVGGQLVTTGLGADEG----- 162

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                         G   V+    S G        +       TN+  DH+D +   +A 
Sbjct: 163 -------------AGEVFVAEADESDGSFL----MLAPEIAVVTNVEPDHLDNYGDPRAV 205

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAI 285
           +++  R  E +       +I ADD  S  ++  A   G +V++ G  +G    +  +   
Sbjct: 206 YDSFARFVERV---GKSMVICADDPGSAALVPIARARGLKVVTYGEAEGADFRVSGILPD 262

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                  +   G+       +PG     NA     + + +G+    + + L        R
Sbjct: 263 GLGISFAVEGRGE---VRLAVPGRHNALNATAVIAVAMELGVSFDEIRDGLAAFTGAKRR 319

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQGKRP 400
           FE  G    G  ++  YAH    L   L+  R + +     GR+I VF            
Sbjct: 320 FEAKGEAG-GVAVFDSYAHHPTELAADLRAARDVVASFSGSGRVIAVFQPHLYSRTRFFA 378

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPE-KIRAEIIHGI----PGFIEKGNRIEAIRTAIE- 454
               +AL LAD AIV D     EDPE  +   ++ G     P  +    + EA+   +  
Sbjct: 379 DEFGVALGLADEAIVLDVYGAREDPEPGVSGALVAGKVPLPPERVTYAPQREAVPALVAG 438

Query: 455 MLNKQDVLVVAGKGHET 471
                D+++  G G  T
Sbjct: 439 RARPGDIVLTMGAGDVT 455


>gi|328943770|ref|ZP_08241235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
 gi|327491739|gb|EGF23513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 491

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 91/485 (18%), Positives = 168/485 (34%), Gaps = 48/485 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E++     +     +   I+  + DSR++ +  +FVA  G + DG+L+   AI
Sbjct: 10  MLTCTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAI 69

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHP-ENILAVT 121
             GA  +V++   S +        N  +L    D+ ++FL   AS    K+P   ++ VT
Sbjct: 70  GAGASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVT 129

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +             I   ST                     L+  S   
Sbjct: 130 GSCGKTTTKDML-------------IATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAE 176

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V    +  +  G         K      TN+G  H+    +++A   AK  +   +  ++
Sbjct: 177 VIVAEMGMNHEGEISRMALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQ 236

Query: 242 SP------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV--T 292
           S        +  +DD  +      A  A   V  VG +    IH+ K+      +     
Sbjct: 237 SRQLKPELILHDSDDFTTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHV 296

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G          G+  V +A  A  +C  +G+        L  +  V  R E +   
Sbjct: 297 VCSDGLMRKVTLSEAGKACVIDACFALRVCEILGVSYDKACCALLHMKQVHMRMEEIKKP 356

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                I   Y     S+   L+ ++    +GR I + G  G+       + G I   +A 
Sbjct: 357 HLPLIIDDSYNAAPASIAQALQVLQQCTCTGRRIAMLGEVGELGAHAHRLHGYIGAYVAA 416

Query: 412 -----IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQ 459
                +  V  D+           E++          +R        EA++    +L   
Sbjct: 417 CNLDMVVFVGSDH---------AQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSD 467

Query: 460 DVLVV 464
           DV++V
Sbjct: 468 DVILV 472


>gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 466

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 167/474 (35%), Gaps = 58/474 (12%)

Query: 15  INQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           +N +   P Q +    +  +  V +DSR+I+ G  FV ++GNK DGHLF+ +   +G +A
Sbjct: 8   LNDIWGPPYQNKLVNLDAPLGTVCTDSRNIKKGNFFVPLIGNKFDGHLFLEEVFEKGVQA 67

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
             +S   +L      I        VD+T++     A          ++AVTG++GK++  
Sbjct: 68  AFISKDCNL-----AIPEELLYWQVDDTQEAYQKLAFLHRRLFSIPVVAVTGSAGKTTTR 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +       G           + + + +N      P  L KA     +   + + +E +
Sbjct: 123 ELIHSSLVPLGE----------VLATSNNNNNDIGVPFTLLKA-----NVNHSAIVLEMA 167

Query: 191 SHGLDQ-HRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             GL Q  RL           TN+G  HI    ++Q   +AK  +   + P     II A
Sbjct: 168 MRGLGQIERLSKCACPDIAVITNIGSSHIGLLGSKQNIASAKCEIAAHMNP-NGFVIIPA 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-----------ISVEG 297
            D   ++ ++         + +  +       +  +   K+ V            I+ +G
Sbjct: 227 GDQLLEKTLQEVWKGRIVRVDIESKSNPFFANEYDSHQTKKNVDYLGVLDSDNWQITYDG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F  PL G     N + A  +   + +        +  L V                
Sbjct: 287 --IIFQMPLQGRHNAINFMFALAVAYELNVPLD----SIRNLSVNLPPGRNHSLTFGNIN 340

Query: 358 IYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI---- 412
           +    Y  +  S+   L  +     GR   V G   +  +       +I           
Sbjct: 341 VLDETYNASPESVIASLD-LLATKPGRHFAVLGNMYELGEKTIDYHEQIVQHSIATGLTG 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
            ++  + P +E      A ++ G P  +IE  +  E A       LN  D L++
Sbjct: 400 LVICVNGPEAE------AMLLAGQPLSYIEVVSTPEDAFLILKSWLNSGDYLLL 447


>gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
 gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
          Length = 464

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 89/385 (23%), Positives = 149/385 (38%), Gaps = 34/385 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + ++ DSR +Q G IF+A+ G + DGH F+ QA A GA   V                  
Sbjct: 33  SGINFDSRALQPGDIFLALQGAR-DGHDFVAQAFASGAVLAVTRRPIE----------GG 81

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             L+V + +K L   A     + P+     VTG+ GK+SV   V Q  Q++G +   I  
Sbjct: 82  ACLLVPDVQKALEDIAVFARNRAPQTRRGGVTGSVGKTSVTQMVMQGLQQAGRAHSAI-- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKLIAGS 208
                        +  + I +   L+ + +     V     +H        + +   A  
Sbjct: 140 ------------KSFNNHIGVPLTLARMPADTERAVFEIGMNHADEITPLSEFVAPHAVV 187

Query: 209 FTNLGRDHIDYHQTQQA-YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            T +G  H +     +A    AK  +F+ L+P    AI+ AD+ +   +  +A  +G  V
Sbjct: 188 ITTVGAVHTENFPDGEAGVAAAKAEIFDGLVP-GGLAILNADNRWFDHLSTKARGSGALV 246

Query: 268 LSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            + G  G     L +     ++  V     G+D  F     G  Q  NAL A  +  A+ 
Sbjct: 247 AAFGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFSLSHTGRHQAVNALAALLMLEALD 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVD-YAHTSNSLEMILKNI-RTITSG 382
           +D    L  LE    + GR   +    +GG   I  + Y     S+   L ++ +  T+G
Sbjct: 307 VDLDTSLLALESFATLEGRGRVITKPFKGGELTIIDESYNANPVSMTATLASLGQRETAG 366

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIAL 407
           R + V     +    +      +A 
Sbjct: 367 RKVAVLTDMLELGVDEADQHAGLAE 391


>gi|320106156|ref|YP_004181746.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
 gi|319924677|gb|ADV81752.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
          Length = 454

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 90/425 (21%), Positives = 151/425 (35%), Gaps = 51/425 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKH 113
           GH     A A+ A+ IV SSA +  +          TPI+   +  + L+      YG  
Sbjct: 57  GHD---AANARDADVIVTSSAVAKSNPEVVEARSRKTPII---HRAEMLAELMRLKYG-- 108

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ G  GK++  S V  +    GL      PT  +            S   L  +
Sbjct: 109 ----IAIAGMHGKTTTTSMVASVLAGGGLD-----PTVVVGG----RVNALGSNARLGNS 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++    +  S               +  I    TNL R+H+D ++       A +  
Sbjct: 156 RYLVAEADESDRSFL------------KLSPILAVVTNLDREHMDAYRDMADVETAFVE- 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + +P         DD   + ++ R      RV++ G         ++    +      
Sbjct: 203 FMDRVPFYGATTACIDDPMLRAILPRVRR---RVMTYGESPDADFQLRMLPKDSDCHAVF 259

Query: 294 SVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V  K      F   +PG+  V NA  A  + + +GI  + + E LE    V  RF+  G
Sbjct: 260 EVNTKGLLLGPFRLHVPGKHNVLNATAAVAIGVELGIAPSQIAEGLEAFRGVDRRFQVKG 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              RG  +  DY H    +   L+  R    GR++V+F         +       A   A
Sbjct: 320 V-VRGVTVVDDYGHHPTEVRATLQAARECGYGRVLVLFQPHRYSRTAELMEEFATAFGDA 378

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D+  V D    +E+P      E + A++          G+  EA+   +      DV++ 
Sbjct: 379 DLVEVVDIYAANEEPIVGVTAEALVAQMQG--TRAEYAGSFEEAVGRLVSEARDGDVILT 436

Query: 465 AGKGH 469
            G G+
Sbjct: 437 MGAGN 441


>gi|39998159|ref|NP_954110.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sulfurreducens
           PCA]
 gi|48428299|sp|P61679|MURC_GEOSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39985105|gb|AAR36460.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens PCA]
          Length = 462

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 141/412 (34%), Gaps = 47/412 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV+S     D    + +   ++ V    + L+      YG      +A+ GT GK++  
Sbjct: 67  VVVTSTAVRDDNPEVVEAKRRMIPVIPRAEMLAELMRMKYG------IAIAGTHGKTTTT 120

Query: 131 SFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           S V  +    G+    +  G  +T+ + A+                     QG   V+  
Sbjct: 121 SMVATVLTHGGIDPTIVIGGKLNTLGTNAK-------------------LGQGQFLVAEA 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S G        +       TN+  DH+D++             F   +P    A++  
Sbjct: 162 DESDGSFLK----LSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCL 217

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           +D    E++ R      R ++ G      I    +             +G    +  F +
Sbjct: 218 EDRNIAEILPRVKK---RFVTYGLSSQADIRATHIRLEGGTTSFVAHYKGYRMGEVSFSM 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL    + + + +  + + E       V  RF+ V     G  +  DY H  
Sbjct: 275 PGAHNVLNALACIAVAMELDVPFSQIQEGFATFGGVGRRFQ-VKGEVNGITVVDDYGHHP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSED 424
             +   L   ++    R +VV      R    R +  +       AD+ ++TD  P  E 
Sbjct: 334 AEIRATLAAGKSGWPERRLVV-AFQPHRFSRTRELFAEFVTCFYDADVLVLTDIYPAGEA 392

Query: 425 P------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P      E++  EI  HG        +R       + ++   D+++  G G+
Sbjct: 393 PIEGVSAERLAEEIRKHGQRDVTYVADREALPEHLLTIVQPGDIVLTLGAGN 444


>gi|153813506|ref|ZP_01966174.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
 gi|149830377|gb|EDM85469.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
          Length = 459

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 145/421 (34%), Gaps = 50/421 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGT 123
           G  A  +S +  +  ++A I  + P       +    L  ++L G+   N    +AV GT
Sbjct: 60  GQRASNISDSVQVVVYTAAIHPDNPEFACAKEKGIPMLTRAQLLGQIMRNYDTSIAVAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  I  + G     I     + +   + R+      +L +A  Y +S    
Sbjct: 120 HGKTTTTSMLSHILLK-GECDPTISVGGILPAIGGNIRVGQSET-FLTEACEYTNSFLSF 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                                  G   N+  DH+D+ +      ++  R F ELLP E  
Sbjct: 178 F-------------------PTIGIILNIDADHLDFFKDIDDIRHS-FRTFAELLPAEGA 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDF- 300
            II AD    + + +   N  C+V++ G +    +             T  V   G+D  
Sbjct: 218 LIINADTPKYEMITE---NLPCKVITYGLEHDAEYTATDITYDELGHATFHVLHNGEDLG 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V NAL +      + + + ++ + L+       RF++ G       I  
Sbjct: 275 TCSLKVPGIHNVSNALASIAAGQLLDLSTEVIFDGLKDFGGTDRRFQYKGKIGD-VTIID 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH    +E  L   +     +I  VF                 AL LAD  ++ D   
Sbjct: 334 DYAHHPTEIEATLHAAKNYPHKKIWCVFQPHTYTRTKALLPEFAKALTLADHVVLADIYA 393

Query: 421 RSEDP----------EKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E            EKI          P F E  N        +E   + D+L+  G G
Sbjct: 394 ARETDNLGISSRNLQEKIVELGTPCEYFPTFDEIEN------FLLENCTQGDLLITMGAG 447

Query: 469 H 469
            
Sbjct: 448 D 448


>gi|299533122|ref|ZP_07046507.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
 gi|298718899|gb|EFI59871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
          Length = 475

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 136/387 (35%), Gaps = 22/387 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  V +D+R +Q G +FVA+ G + D H F+PQA          + A +        
Sbjct: 25  QLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQAQ--------AAGAVAAIASHGLE 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +    + V +T   L   A     +    ++AVTG++GK++V   +  I +       +
Sbjct: 77  AAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGKTTVTQMIASILRAHVGGQGE 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +T  +F     +           L    +  +  + +  +  G         +   
Sbjct: 137 A-ALATRGNFNNSIGMPLN-------LLRMTDAHRIAVLEMGMNHPGEIAELAAIGQPTV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +    LPK+  AI  A D Y+    + +      
Sbjct: 189 ALVNNAQREHQEFMGTVEAVARENGSVL-RFLPKDGVAIFPAGDEYTPLWTELSAGRPSL 247

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +      G  +    V   +      ++           + G   V NAL AA    A G
Sbjct: 248 MFGEAADGAQVFANDVVWANGAWSFALNTPQGVAAVQLHIAGRHNVRNALAAAACAHAAG 307

Query: 327 IDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           +    + + L     V GR     V    +G  +  D Y    +S+   +  +  + + +
Sbjct: 308 VPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDTYNANPDSVAAAIAVLAELPAPQ 367

Query: 384 IIVVFGCGGDRDQGK--RPIMGKIALD 408
           ++V+   G   D G       G +A  
Sbjct: 368 LLVLGDMGEVGDNGPQFHAEAGALAQQ 394


>gi|319789776|ref|YP_004151409.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
 gi|317114278|gb|ADU96768.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
          Length = 446

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 143/412 (34%), Gaps = 41/412 (9%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+ ++ SSA   S  +     +   P++   +    +S       G      +AV GT
Sbjct: 58  KGADVVIHSSAVKPSNPEIVEAKKLGIPVIPRADV---VSDIMRLKEG------IAVGGT 108

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++ +S +  I   +G S     PT  +            +       +        T
Sbjct: 109 HGKTTTSSMIATILHSAGTS-----PTILVGGRLPFLGGDNAALGSGKWIVIEADESDGT 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +                +       TN+  DH+D++ + +    A    F   +     
Sbjct: 164 FLK---------------LTPTLSVITNVDNDHLDFYGSPEEIDKA-FTAFANRVAFYGK 207

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
             +  +      V K +     R  + G++G     ++V  +      T+  +GK     
Sbjct: 208 VFLCIECP---RVRKISPKVYKRKETYGFEGADFTAEEVTQVGLSSIFTVRYKGKKLGKV 264

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG+  V NAL A  + +  G+      E L +      R E  GT  +G   + DY
Sbjct: 265 RLNVPGKHNVLNALGAIAVALETGVPFKEAAEALGQFRNASRRMELKGT-VKGITFFDDY 323

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNP 420
            H    ++   + I++    R +VV      R    + +  +    L   +   + D  P
Sbjct: 324 GHHPTEIKASYEAIKSAFPNRRVVVLFQP-HRFSRTKLLWREFVETLKGFENLFLCDIYP 382

Query: 421 RSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             E+P E I +  +      +  G   EA +   ++L   DV +  G G  T
Sbjct: 383 AGEEPIEGIDSRKLASECKAVYAGGLEEACKLMAKVLRPGDVFLSLGAGSVT 434


>gi|262200427|ref|YP_003271635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
 gi|262083774|gb|ACY19742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
          Length = 436

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 164/455 (36%), Gaps = 41/455 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I ++    +   +  +N  + DSR +  G +FV IV  + DGH FI  A+  GA A + S
Sbjct: 5   IAEVVGGQLVGDDVAVNGATIDSRSVSTGQLFVPIVAAR-DGHDFISAALDAGAPAYLTS 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +        A        ++VD+T + L+   +    + P  ++ VTG+ GK+S    + 
Sbjct: 64  AGAVDGAAGAA-------IIVDDTARALAALGAAARDRLPGRVVGVTGSVGKTSTKDLLA 116

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +   +  ++       + ++          +P      +  + ++G+ H+ +  S    
Sbjct: 117 GLLATTFRTAAS---EKSFNNELGLPLTLVNAPDDTEAVVLEMGARGIGHIDLLCSIG-- 171

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   K   G  T +   H++     +A   AK  L E L P +  A++ AD    K
Sbjct: 172 --------KPTVGIITRVEGVHLELFGNIEAVARAKGELVEAL-PDDGIAVLNAD---HK 219

Query: 255 EVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            V   A     RV++ G   +        V     +    +     + D      GE QV
Sbjct: 220 HVAAMADRTSARVITFGLTPESDVHASAVVIDDELRASFRLHSPWGETDIRLAARGEHQV 279

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371
            NAL A      +G+      E L    +   R E V T+ RG  I  D Y     S+  
Sbjct: 280 PNALAAVAAAGGLGVPLEKFAEGLLGAALSGLRMELV-TSERGVTILNDAYNANPTSMSA 338

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+++  + +GR I V G   +           IA    ++ I           E I   
Sbjct: 339 ALQSLAALAAGRRIAVLGTMAELGHDSAWQHEAIASQARELGI-----------EVIAVG 387

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                       +   A    +  L   D ++V G
Sbjct: 388 EPTYGADVRHVADVAAASAE-LSDLGAGDAVLVKG 421


>gi|302876612|ref|YP_003845245.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
 gi|307687286|ref|ZP_07629732.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulovorans
           743B]
 gi|302579469|gb|ADL53481.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
          Length = 461

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 139/414 (33%), Gaps = 49/414 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           +S   S+  ++A I  + P LV  N R       +   G+  ++    +AV+GT GK++ 
Sbjct: 68  ISEDVSVIVYTAAIAKDNPELVSANNRNLPMFTRAEFLGEIMKDYKHNIAVSGTHGKTTT 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S V  I  + G     I    ++       R       +L +A  Y  S    +     
Sbjct: 128 TSMVSHILLK-GEKDPTILVGGSLDIINGYVRTGKSD-YFLTEACEYKGSFLSFY----- 180

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                            G   N+  DH+DY++       A  + F  L+P++   I+  +
Sbjct: 181 --------------PTIGIILNIDADHLDYYKDIDEIEEA-FQKFAYLIPRDGYLIVNNE 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKD-FDFLFPLP 307
           D      +  A N+ C  ++ G     I  K V           +  +G + F     +P
Sbjct: 226 DE---RAVNVAKNSNCNTITFGIDNGDIIAKNVTFNSLGHGSFDMFYKGCEYFHVTLKVP 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N+L A    IA GI+   +   +E       RFEF GT      +  DYAH   
Sbjct: 283 GRHNVLNSLSAMAAAIASGIEPNHIKAGIESFGGTHRRFEFKGT-VDDITVIDDYAHHPT 341

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++  L+  + ++  R+I VF                         ++ D     E    
Sbjct: 342 EIKATLEACKNVSHNRLICVFQPHTYTRTYSLFKDFSECFGGITKLVLADIYAAREKDTG 401

Query: 428 IRAEIIHG------------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I +    G            +  F E  N               D+++  G G 
Sbjct: 402 IVSSQRLGDAIRLNGVDCINLHSFEEITN------FLKTYAKAGDMIITVGAGD 449


>gi|298241040|ref|ZP_06964847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554094|gb|EFH87958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 474

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 90/485 (18%), Positives = 152/485 (31%), Gaps = 48/485 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++  +  ++  Q S  P             DSR I  G +F+A  G   DGH FIP 
Sbjct: 4   LNDIVQSNTDQIHIQSSTTPDPA--LVFRSAHHDSRLITPGDLFIARKGTNSDGHHFIPA 61

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENI- 117
                      + A +L    +T  ++ P     ++V +    L   A     +  + + 
Sbjct: 62  ----------AARAGALAALCSTPANDVPPDFLQIIVPDVLTALHATARARTQRQKDTVR 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK+S    V  +               T +S+  +              L   
Sbjct: 112 IGITGSNGKTSTKDAVAAVLSHKAP------TLKTYASYNHELGYP-------ITLLHLE 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  + + A   G      + I        T +G  H++Y  TQ+    AK  L  +
Sbjct: 159 PQHRYAVLEMGAQCVGELTWLCNSIASPHWSIITTVGAAHLEYFGTQERVAIAKSELV-Q 217

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +L  +  AI+  DD   + +  +           G                    T+   
Sbjct: 218 VLTPDGFAILNYDDELVRAMAAKTQARILY-YGTGEGATVRASNIGGDTLFGHSFTLHYH 276

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +       LPGE  V  AL AA    A  +    +   LE L   PGR E     +   
Sbjct: 277 DQQQPVQLRLPGEHGVTIALAAAATGCAAEMSLDDIASALEDLSPAPGRCEIKPGPNNST 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--- 410
            I   Y     S+  I   +       +G+   + G         R         LA   
Sbjct: 337 LIDDSYNANRQSIIAITSAMHNTSQAPNGKRWAILGDIFQLGTYARAEHSTCGSSLAGLV 396

Query: 411 DIAIVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIRTAIE-----MLNKQDV 461
           D  I   D  R      I + +     +     +     +EA + A        +   D+
Sbjct: 397 DYLIAIGDQARFYVEGAIASGMPEKNAYYFSADVNNSAELEAAKRAAADLLKHEVRPGDL 456

Query: 462 LVVAG 466
           +++ G
Sbjct: 457 VLLKG 461


>gi|241765146|ref|ZP_04763134.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
 gi|241365225|gb|EER60072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
          Length = 475

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 137/375 (36%), Gaps = 26/375 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  V +D+R +QAG +FVA+ G + D + F+  A A GA A +               
Sbjct: 28  TPVARVHTDTRTLQAGDLFVALKGERFDANAFLADARAGGAVAAIAHGGLE--------A 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  P + V ++   L   A+    +    ++ +TG++GK++V   V  I +     +   
Sbjct: 80  AGLPGIEVPDSLAALGALAAGWRAQFGLPLIGITGSNGKTTVTQMVASILRAWKGEAAF- 138

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              ST  +F  D  +        A   + +   G+ H    A+   + Q           
Sbjct: 139 ---STQGNFNNDIGVPLTLLRLRAAHAAAVIEMGMNHPGEIATLAAIAQ-------PTVA 188

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H+++  T +A       +   L P +  A+  A D YS      A    C  
Sbjct: 189 LVNNAQREHLEFMHTVRAVAEENGSVLAAL-PADGVAVFPAGDPYSALWGALAAPRRCVT 247

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G     +   +         V +            + G+  V NAL AA   +A G 
Sbjct: 248 FGAG---GDVRCAQASWRQGAWAVEMVTPLGALSCSLQIAGQHNVTNALAAAACALAAGA 304

Query: 328 DSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
               +   L     V GR   +G     R   +  D Y    +S+   +  + ++ + ++
Sbjct: 305 PLESIARGLSAFTPVKGRSRAIGLRVADRQVTVVDDSYNANPDSMRAAIDVLASLPAPQL 364

Query: 385 IVVFGCGGDRDQGKR 399
           +V+   G   DQG +
Sbjct: 365 LVMGDMGEVGDQGPQ 379


>gi|264680250|ref|YP_003280160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
 gi|262210766|gb|ACY34864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
          Length = 475

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 136/387 (35%), Gaps = 22/387 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  V +D+R +Q G +FVA+ G + D H F+PQA          + A +        
Sbjct: 25  QLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQAQ--------AAGAVAAIASHGLE 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +    + V +T   L   A     +    ++AVTG++GK++V   +  I +       +
Sbjct: 77  AAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGKTTVTQMIASILRAHVGGQGE 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +T  +F     +           L    +  +  + +  +  G         +   
Sbjct: 137 A-ALATRGNFNNSIGMPLN-------LLRMTDAHRIAVLEMGMNHPGEIAELAAIGQPTV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +    LPK+  AI  A D Y+    + +      
Sbjct: 189 ALVNNAQREHQEFMGTVEAVARENGSVL-RFLPKDGVAIFPAGDEYTPLWTELSAGRPSL 247

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +      G  +    V   +      ++           + G   V NAL AA    A G
Sbjct: 248 MFGEAADGAQVFASDVVWANGAWSFALNTPQGVAAVQLHIAGRHNVRNALAAAACAHAAG 307

Query: 327 IDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           +    + + L     V GR     V    +G  +  D Y    +S+   +  +  + + +
Sbjct: 308 VPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDSYNANPDSVAAAIAVLAELPAPQ 367

Query: 384 IIVVFGCGGDRDQGK--RPIMGKIALD 408
           ++V+   G   D G       G +A  
Sbjct: 368 LLVLGDMGEVGDDGPQFHAEAGALAQQ 394


>gi|315937120|gb|ADU56127.1| hypothetical protein CA915-6 [uncultured organism CA915]
          Length = 447

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 149/470 (31%), Gaps = 41/470 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVS-SDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+   +       R   +   +  D R  + G +FVA  G   DGH F  QA 
Sbjct: 1   MIAMSVGEIAAAVGGLVAGDRAVTVTAAAVLDGREARPGGLFVAFDGEHVDGHDFAGQAG 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
             GA A++ S    L           P +VVD+ +  L   A+ +  +      ++AVTG
Sbjct: 61  QAGAVAVLGSRPTVL-----------PTVVVDDVQAALQALAAHVLARLRAGLTVIAVTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +      +   +   +             P   +L            
Sbjct: 110 SQGKTSTKDQLGAVLASVAPTIATVANRNNELGVPLTVLRAGPETRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G      +   L      N+G  H+    +++A   AK  L   L+P   
Sbjct: 158 -VLEMGARHTGDIAMLTNLYPLDVAVVLNVGTAHLGEFGSREAIGRAKGELVRGLVP-GG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +M+   +                         +   T+         
Sbjct: 216 TAVLNADDPRVA-LMRSLSDGPVLTFGYADHADVRVRDLTLDRFGRPSFTLCTADASVGV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G  Q  NA  A    +A G+   +    L    +   R E     S    +   Y
Sbjct: 275 TLPFVGGHQAGNASAATAAALAAGVSLDVAAAVLGTASLSKWRMELRHLTSGVTLLNDSY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM---GKIALDLADIAIVTDDN 419
             + +S    L  +  +   R I V G   +  Q         G+ A   AD+ I     
Sbjct: 335 NASPDSTRAALDALLAVEGARRIAVLGEMRELGQASEAEHRAVGEYAAARADMVIAIG-- 392

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                 E +R          +   +   A++     L   DV++V A +G
Sbjct: 393 ------ETVRPLADGAGDRAVVLADNDAAVKWLHGNLAAGDVVLVKASRG 436


>gi|254775004|ref|ZP_05216520.1| hypothetical protein MaviaA2_10069 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 519

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 86/517 (16%), Positives = 146/517 (28%), Gaps = 83/517 (16%)

Query: 3   LQDLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + DL      +++      I       R++   V  DSR +  G +F+A+ G + DGH  
Sbjct: 1   MIDLTVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHDH 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---- 115
                         + A       A      P +V        +L     +         
Sbjct: 61  AE-----------SAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAV 109

Query: 116 --------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
                                I+ +TG+SGK+S    V  +    G      G  +    
Sbjct: 110 LAALAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELG 169

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   T    YL              + + A   G      +      G   N+G  
Sbjct: 170 HPWTVLRATADTDYL-------------VLEMSARHPGNIAALAEIAPPAVGVVLNVGTA 216

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--- 272
           H+    +++A    K  L  + +P     ++  DD     + +       RV    +   
Sbjct: 217 HLGEFGSREAIARTKSEL-PQAVPASGVVVLNVDDPTVAAMAEVTAARVVRVSRAEHTEA 275

Query: 273 -QGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPG--EFQVYNALVAAGLCIAIGI 327
                           +   T+     G        L    + QV NAL AA + +  G 
Sbjct: 276 GPSDVWAGPVSLDELARPGFTLYHRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGA 335

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG---- 382
               V+  L     V      V T   G  +  D Y    +S+   L+ +  I  G    
Sbjct: 336 TVEQVVAALAGAGPVSRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEP 395

Query: 383 -----RIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEI 432
                R   V G   +          +I      LD++ + +V     RS         +
Sbjct: 396 GAPARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSVSAMH-HGAV 452

Query: 433 IHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + G       G +   +   A+      L   DV++V
Sbjct: 453 MEGSWGSADKGAVNVPDAEAALELLRAELQPGDVVLV 489


>gi|288870137|ref|ZP_06113069.2| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
 gi|288868258|gb|EFD00557.1| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
          Length = 463

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 166/444 (37%), Gaps = 66/444 (14%)

Query: 64  IAQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGK---HP 114
            A+GA       A ++ D      ++A +  + P       +    L  + L G+   + 
Sbjct: 55  AAKGARIAYGQRAENIVDGIDVVVYTAAVHPDNPEFAAAMEKGLPMLSRAELLGQMMKNY 114

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           EN +AV+GT GK++  S + +I   +  +   I     ++S   + R+  P         
Sbjct: 115 ENAVAVSGTHGKTTTTSMITEIL-LAADADPTISVGGILNSIGGNIRVGGPE-------- 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               ++   + +   S                    N+  DH+D+ +       +  RLF
Sbjct: 166 -LFVTEACEYTNSFLSFF-----------PTIEVILNVEADHLDFFKDLDDIRRS-FRLF 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VT 292
            E LPK+   +I +D    +++ +      CRV++ G +    +  +        +    
Sbjct: 213 AEKLPKDGILVINSDITDYEKITE---GLPCRVITFGKEESSKYRAEQIRFDELARPVFD 269

Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +SV+G+  D     +PGE  VYN+L A  +C+ +GI   ++ + L K      RFE  G 
Sbjct: 270 LSVDGETVDTVALGVPGEHNVYNSLAAIAVCMELGISLEMIKKGLWKFTGTNRRFEKKGE 329

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G  I  DYAH    +   L         ++ VVF                 AL +AD
Sbjct: 330 LG-GITIIDDYAHHPQEISASLATALNYPHRKLWVVFQPHTYTRTKAFLDEFAEALSMAD 388

Query: 412 IAIVTDDNPRSE-DPEKIRAEIIHGIPGFIEKGNRIEA-------------IRTAI-EML 456
             I+ D     E D   I ++         +  +RIEA             I T I E  
Sbjct: 389 EVILADIYAARETDNLGISSK---------DIVDRIEAKGVKAHYIPSFDEIETFILENC 439

Query: 457 NKQDVLVVAGKGHETVHIVTNGEK 480
              D+L+  G G     IV  GEK
Sbjct: 440 IHGDLLITMGAGD----IVKVGEK 459


>gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
 gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
          Length = 461

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 150/398 (37%), Gaps = 62/398 (15%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN---------------KEDGHLFIPQ 62
           ++I   Q  E  ++ +  DSR I+ G +F+ I  +               ++DGH FI  
Sbjct: 17  INISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFINS 76

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A               ++++ P+++V +T+  L   A     K     +AVTG
Sbjct: 77  ALKNGAVASFADH---------IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAVTG 127

Query: 123 TSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           ++GK++    +  +        +    ++ +IG  +TI +   D                
Sbjct: 128 SNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTE-------------- 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 +  + +     G        ++      T +G  HI++ +T+    +AKM + +
Sbjct: 174 ------IAVIEMGMDHLGQLTALSKMLEPNISLITMIGEAHIEFFKTRDKIADAKMEIIK 227

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L    +       D     + +RA       ++ G +        V  I +K++++  V
Sbjct: 228 GLKKDGTFIY----DGDEILLKERADLFSGEKVTFGEKESNNFW--VSQIEDKKRLSFKV 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             + +     L G+F   N   A  +     + S  + E  + L +   R + + T S+G
Sbjct: 282 NQETYSV--NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLL-TGSKG 338

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCG 391
             I  D Y     +    ++ ++   + G+ I+V G  
Sbjct: 339 ETIISDVYNSNPTAAIKAIEILKDFPTRGKKILVLGDM 376


>gi|308233781|ref|ZP_07664518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 482

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 91/485 (18%), Positives = 168/485 (34%), Gaps = 48/485 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E++     +     +   I+  + DSR++ +  +FVA  G + DG+L+   AI
Sbjct: 1   MLTCTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHP-ENILAVT 121
             GA  +V++   S +        N  +L    D+ ++FL   AS    K+P   ++ VT
Sbjct: 61  GAGASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVT 120

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +             I   ST                     L+  S   
Sbjct: 121 GSCGKTTTKDML-------------IATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAE 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V    +  +  G         K      TN+G  H+    +++A   AK  +   +  ++
Sbjct: 168 VIVAEMGMNHEGEISRMALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQ 227

Query: 242 SP------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV--T 292
           S        +  +DD  +      A  A   V  VG +    IH+ K+      +     
Sbjct: 228 SRQLKPELILHDSDDFTTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHV 287

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G          G+  V +A  A  +C  +G+        L  +  V  R E +   
Sbjct: 288 VCSDGLMRKVTLSEAGKACVIDACFALRVCEILGVSYDKACCALLHMKQVHMRMEEIKKP 347

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                I   Y     S+   L+ ++    +GR I + G  G+       + G I   +A 
Sbjct: 348 HLPLIIDDSYNAAPASIAQALQVLQQCTCTGRRIAMLGEVGELGAHAHRLHGYIGAYVAA 407

Query: 412 -----IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQ 459
                +  V  D+           E++          +R        EA++    +L   
Sbjct: 408 CNLDMVVFVGSDH---------AQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSD 458

Query: 460 DVLVV 464
           DV++V
Sbjct: 459 DVILV 463


>gi|148257416|ref|YP_001242001.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
 gi|166222959|sp|A5EPK1|MURC_BRASB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146409589|gb|ABQ38095.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 467

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 85/420 (20%), Positives = 142/420 (33%), Gaps = 49/420 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  AGADVVVVSTAIKRDNPELMTARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    G+    I     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVAALLDAGGIDPTVING-GIINAYGTNARLGAGDWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T  A  +A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRAFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----- 300
           +  D    + ++ +  +       V  Q   + L  +   +   +  +    +       
Sbjct: 216 MCIDHPVVQALVGKIEDRRIITYGVNPQAD-VRLVDLSPANGSSRFKVVFRDRKSGATHE 274

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D   P+PG     NA  A  +   +GI    + + +     V  RF   G    G  I
Sbjct: 275 ISDITLPMPGRHNASNATAAIAVAHELGISDEAIRKAIAGFGGVKRRFTRTGEW-NGVTI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    +  +LK  R  TSG++I V                    + AD  IV D 
Sbjct: 334 IDDYGHHPVEIAAVLKAARESTSGKVIAVVQPHRYTRLQSLFEEFCTCFNDADAVIVADV 393

Query: 419 NPRSEDP-EKIRAEIIHGIPGFIEKGNR-----IEAIRTA---IEMLNKQDVLVVAGKGH 469
            P  E P E I  +  H + G    G+R      +A   A     +    D++V  G G+
Sbjct: 394 YPAGEAPIEGIDRD--HFVLGLRAHGHRDVLPLPQAADLAGIVKRLAKSGDLVVCLGAGN 451


>gi|158834096|gb|ABW81853.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 86/250 (34%), Positives = 122/250 (48%), Gaps = 7/250 (2%)

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DYH     
Sbjct: 12  SAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKK 281
           Y  AK  LF  L  +    II  DD   +  +    NA        +  G QG ++  +K
Sbjct: 72  YEIAKKSLF--LDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWLSAQK 129

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +    N   +  +      +   PL G F V N L+     +A+      +L+   KL  
Sbjct: 130 IQYHENGAFIFFNSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQA 189

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKRP+
Sbjct: 190 IPGRMEVFKKVGR-PTVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKRPL 248

Query: 402 MGKIALDLAD 411
           MGKIA  LAD
Sbjct: 249 MGKIAETLAD 258


>gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
 gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
          Length = 478

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 138/407 (33%), Gaps = 30/407 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L   +  E +   +I   Q  +     V SDSR +  G +FV I G + DGH F    + 
Sbjct: 3   LTPNEMREALGAGAILGAQG-DATFASVRSDSRKVAPGDLFVCIRGERFDGHDFAADVVR 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  ++        +  +    +  I+VV ++ K L   A+    +    ++ VTGT+G
Sbjct: 62  QGARVLIAERDPFNGECPSA---DVTIMVVGDSVKALGRLANLHRMRSKARVVGVTGTAG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   + Q+                    A++              L    ++    +
Sbjct: 119 KTTVKELLAQVL-------------GVRGDTARNPLNLNNQIGLPLSMLEATGNESFWVM 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S           ++   G   N+G+ H+     +      K RL   L  +    +
Sbjct: 166 EAGISQPQDMDELGAVLRPDIGLVLNVGQGHVAGLGDR-GVAYYKSRLLAHL-AEGGTGL 223

Query: 246 IYAD-DAYSKE---VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGK 298
           + AD D   +E   V +R          VGY+  +       A  +     +  + ++G 
Sbjct: 224 VCADYDDLVREARSVCRRLQFFSASGRGVGYRAAYDGPVADAAGSDGGVRGRYRVWLDGS 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + + P  G F   N    A      G+    +   L +   V  R  F      G   
Sbjct: 284 VHEVVAPFRGAFGAENVAAVAAAAHLCGLSGEEIAAGLAE--AVLPRQRFACATVGGFVC 341

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
             D Y     S   +++ +  + +G   +VF  G   + G+      
Sbjct: 342 IDDTYNANPLSSARMVEAVTEMAAGG-PLVFVLGEMLELGEEAADAH 387


>gi|332528822|ref|ZP_08404796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
 gi|332041681|gb|EGI78033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
          Length = 496

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 158/414 (38%), Gaps = 36/414 (8%)

Query: 3   LQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L+D++ +    +L+   +  P    E ++  V +DSR ++ G +FVA+ G++ DG+ F+ 
Sbjct: 11  LRDILPWLGNAQLLADEAGGP-AVDEVRVRRVHTDSRTLREGDLFVALRGDRFDGNAFLA 69

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENI 117
           QA A GA A + S A +L+      ++  P +VV +TR+ L   A          H   +
Sbjct: 70  QARAAGAVAALCSDAAALR------QAQLPGIVVSDTRRALGQLAQGWRQHIARGHRLPL 123

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GK++V      I +            +T  +F  D  +         +    +
Sbjct: 124 IAVTGSNGKTTVTQMTAAILRA----HKPQTMLATEGNFNNDIGVPLTLLRLRPRHELAV 179

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+ H        G         +       N  R+H ++  + +A       +   L
Sbjct: 180 VELGMNHP-------GEIAELAAITRPTVALVNNAQREHQEFMHSIEAVARENGAVISAL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---------VCAIHNK 288
              +  A+  +DDAY+    + A        SV      +H            V     +
Sbjct: 233 -GADGVAVFPSDDAYTGIWHELAGARSRLTFSVNDAAADLHCADPALAAPQWQVDDKGGR 291

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE- 347
            +V          F   + G   V NAL AA   +A G+    +   LE    V GR   
Sbjct: 292 WEVQARTPAGALRFTLRVAGLHNVKNALAAAACALAAGVPLNAIARGLESFEPVSGRSRA 351

Query: 348 -FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +    R   +  D Y    +S+   +  + ++   R++V+   G    +G R
Sbjct: 352 LRLPVAGRELTLIDDTYNANPDSVRAAIDVLASLPGPRLLVLGDMGEVGQEGPR 405


>gi|298507096|gb|ADI85819.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens
           KN400]
          Length = 462

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 141/412 (34%), Gaps = 47/412 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV+S     D    + +   ++ V    + L+      YG      +A+ GT GK++  
Sbjct: 67  VVVTSTAVRDDNPEVVEAKRRMIPVIPRAEMLAELMRMKYG------IAIAGTHGKTTTT 120

Query: 131 SFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           S V  +    G+    +  G  +T+ + A+                     QG   V+  
Sbjct: 121 SMVATVLTHGGIDPTIVIGGKLNTLGTNAK-------------------LGQGQFLVAEA 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S G        +       TN+  DH+D++             F   +P    A++  
Sbjct: 162 DESDGSFLK----LSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCL 217

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           +D    E++ R      R ++ G      I    +             +G    +  F +
Sbjct: 218 EDRNIAEILPRVKK---RFVTYGLSSQADIRATHIRLEGGTTSFVAHYKGYRMGEVSFSM 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL    + + + +  + + E       V  RF+ V     G  +  DY H  
Sbjct: 275 PGAHNVLNALACIAVAMELDVPFSQIQEGFATFGGVGRRFQ-VKGEVNGITVVDDYGHHP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSED 424
             +   L   ++    R +VV      R    R +  +       AD+ ++TD  P  E 
Sbjct: 334 AEIRATLAAGKSGWPERRLVV-AFQPHRFSRTRELFAEFVTCFYDADVLVLTDIYPAGEA 392

Query: 425 P------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P      E++  EI  HG        +R       + ++   D+++  G G+
Sbjct: 393 PIEGVSAERLAEEIRKHGQRDVTYVADREALPEHLLTVVQPGDIVLTLGAGN 444


>gi|319944702|ref|ZP_08018966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741951|gb|EFV94374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 471

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 146/401 (36%), Gaps = 41/401 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   +S+DSR ++ G +++A+ G++ DGH FI  AI  GA A++              R 
Sbjct: 23  RFTGISTDSRTVRPGDLYIALRGDRFDGHAFIDAAIDAGAAAVLTE--------VFPERV 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQI 147
             P L V +TR+ L   A     +    ++AVTG++GK++    +  I     G  +   
Sbjct: 75  RVPTLWVPDTRRALGALAGGWRRRFECPLIAVTGSNGKTTAKEMIAAILVAHLGAEAAF- 133

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +T  +F  D       P+ L + LS     GV  V +  +  G         +    
Sbjct: 134 ---ATRGNFNND----IGVPLTLLR-LSDAHRMGV--VEMGMNHPGEIAGLAAMTQPSVA 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++    +A       +F   L     A+   DD  +     +A   G RV
Sbjct: 184 LVLNAQREHQEFMDGPEATARENGTVF-GALAASGVAVFPGDDPCTPIW--QALAQGQRV 240

Query: 268 LSVGYQGKFIHLK----------------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           L+ G       L+                        +     +     D    + G   
Sbjct: 241 LNFGLVADEAALEADVQSTPDAGTPYLSVAAARDARPEHFRARLGEALVDIRLNIAGRHN 300

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL AA   +A+G+    ++  L     V GR     T      I   Y    +S+  
Sbjct: 301 VRNALAAAACTLALGVPVEAIVRGLAAFEPVSGRLRRTHTAQGVPLIDDTYNANPDSMRA 360

Query: 372 ILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLA 410
            +  +    + R++V+   G    + +     +G+ A+  A
Sbjct: 361 AIDVLADQPAPRLMVMGDMGETGAQAEAFHREVGEYAVSRA 401


>gi|325138950|gb|EGC61500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis ES14902]
          Length = 452

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGIALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYACDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
 gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
          Length = 821

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 83/472 (17%), Positives = 174/472 (36%), Gaps = 49/472 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+ + +    +   +  I+ + +DSR +      +F A+   + DGH +IP+  A+G 
Sbjct: 5   IEEITSVIGAERIGKHQATIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPELYARGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV+          +  ++   L V NT K L   A++   +    ++ +TG++GK+ 
Sbjct: 65  RNFVVTDVPE----QLSHYADANFLQVGNTLKALQRLAAKHREQFQVPVVGITGSNGKTV 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  +++    + L           
Sbjct: 121 VKEWIYQLLS--------PEKVITRSPRSYNSQIGVPLSVWMMNEHTELGIFEA-----G 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +     I+   G  TN+G  H +   + Q     K++LF++        I   
Sbjct: 168 ISEMGEMEALQPIIQPTIGVLTNIGWAHQENFSSLQGKCMEKLQLFKDC----DVIIYNG 223

Query: 249 DDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           D+   S  V K    +     S+    + + ++K+        V     G   ++  P  
Sbjct: 224 DNELISSCVSKSLFTSREIAWSMKDNERPLFIEKIEKDDTGTTVKYRYLGFLKEYRIPFI 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +  + N+L A  + + + +    + E +  L  V  R E      + G + ++ ++ S+
Sbjct: 284 DDASIENSLNALAVALYLMVSPEDIAERMAHLEPVAMRLE--VKEGKNGCVLINDSYNSD 341

Query: 368 ----SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
                + +     RT   GR   +             ++ +    +AD+         S 
Sbjct: 342 FASLDIALDFMARRTEDKGRRRTLILSDILESGQPSKLLYR---QVADLV-------HSR 391

Query: 424 DPEKIR---AEIIHGIPGFIEKGNR-----IEAIRTAIEMLNKQDVLVVAGK 467
             ++I     EI      F E   R      E I + I    + +V+++ G 
Sbjct: 392 KVDRIIGVGEEISAAASRF-EIDKRFFRTTAELIESGILSSLRNEVVLIKGA 442


>gi|39936596|ref|NP_948872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650452|emb|CAE28975.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 479

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 159/479 (33%), Gaps = 41/479 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  Q L   D   +   ++        R +  +S DSR +  G  + AI G+  DGH F+
Sbjct: 1   MSKQPLWTSD--AMAEAMAATRSGTLPRDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA   VV  A       A    + P+LVVD+  + L         + P  ++AV
Sbjct: 59  AAALNAGAALAVVEKAQR-----AKFAPDAPLLVVDDVLEGLRQLGIAARSRLPAKVIAV 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    ++ +    G +   +   +                 +           
Sbjct: 114 TGSVGKTSTKEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPADTRF----------- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  +  G  +  +  ++      T +   H+++    +   +AK  +F  L P 
Sbjct: 163 --AVFEIGMNHAGEIEPLVKMVRPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEP- 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK 298
              A++  D      +   A  A   R+++ G        L  V    +   V  S+ G 
Sbjct: 220 GGIAVLNRDTPMFDRLCSNALRASVGRIVTFGADPAADARLLDVALHADCSAVHASILGH 279

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGG 356
           D  +   +PG     N+L         G D AL    L ++    GR   + +   S   
Sbjct: 280 DVTYKLGMPGRHMALNSLAVLAAAELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEA 339

Query: 357 RIYVD-YAHTSNSLEMILKN---IRTITSGRIIVVFGCGGDRDQG----KRPIMGKIALD 408
            +  + Y     S+   L           GR I V G   +         R +   +  +
Sbjct: 340 TLIDESYNANPASMAAALGVLGRAEVSGQGRRIAVLGDMLELGPRGPELHRGLEEAVRAN 399

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAG 466
             D+        R+        + +         G+   A+    +  +   DV++V G
Sbjct: 400 GIDLVFCCGPLMRN------LWDALSSGKRGGYAGD-AAALESQVVAAIRAGDVVMVKG 451


>gi|158834074|gb|ABW81842.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834076|gb|ABW81843.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834078|gb|ABW81844.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834080|gb|ABW81845.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834084|gb|ABW81847.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834086|gb|ABW81848.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834094|gb|ABW81852.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 121/250 (48%), Gaps = 7/250 (2%)

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DYH     
Sbjct: 12  SAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKK 281
           Y  AK  LF  L  +    II  DD   +  +    NA        +  G +G ++  +K
Sbjct: 72  YEIAKKSLF--LDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGAWLSAQK 129

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +    N   +         +   PL G F V N L+     +A+      +L+   KL  
Sbjct: 130 IQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQP 189

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKRP+
Sbjct: 190 IPGRMEVFKKVGR-PTVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKRPL 248

Query: 402 MGKIALDLAD 411
           MGKIA  LAD
Sbjct: 249 MGKIAETLAD 258


>gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
          Length = 476

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 139/405 (34%), Gaps = 55/405 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +Q G +FVA+   + DGH F+  A+ +GA A +VS           + S+ 
Sbjct: 25  TGVSIDTRTLQPGDLFVALKDVR-DGHDFVAMALEKGAAAALVS------HRPDGVASDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+LVV +  K L         +    I A+TG+ GK+S    ++ +  R G         
Sbjct: 78  PLLVVPDVLKGLEALGIAARARSTARIAAITGSVGKTSTKEMLRTVLSRQGKCHA----- 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ + +      + +  S+ G         +      
Sbjct: 133 ---------AEASYNNHWGVPLTLARMPADADFAVIEIGMSNPGEIAPLSRMARPHVAMV 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+   ++       K  + + L P    A++  D A +  +  RA + G +++ 
Sbjct: 184 TTVAAAHLASFESLAGIAAEKATIVDGLEP-GGIAVLNGDVATTAILQDRAGDIGAQIVL 242

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL------------- 316
            G       +  +    +   +  +  G D+ F   +PG     NA+             
Sbjct: 243 FGETAGAWRISDLRISRDVTVIGATSPGHDYLFKLSVPGRHFGLNAVGVLAVVAALGADP 302

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLEMILK 374
           VAA L +A+ +  A                +    N       +D        SL   L+
Sbjct: 303 VAASLDLALWVPPAGR--------GTREIIQLDLANEFETIDLMDDAFNANPTSLAASLE 354

Query: 375 NIRT---------ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            I           I  GR I + G   +    +  +   +A +  
Sbjct: 355 VIAAGQPQDGVGRIVKGRKIAILGDMLELGTDEVAMHAAMAQNPH 399


>gi|281425031|ref|ZP_06255944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
 gi|281400875|gb|EFB31706.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
          Length = 438

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 152/424 (35%), Gaps = 40/424 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR+     IF+A+ G   DG+ F   A+ +G    ++      +        N  +
Sbjct: 16  ITTDSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAE------ADNDRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    V  +         +     T
Sbjct: 70  ILVDDCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSTVLAE------RYNVMHT 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D       P  L +  +   +  +  V + AS  G  +  +   +   G  TN+
Sbjct: 124 EGNFNNDV----GVPKTLFRLNA---THEIAVVEMGASHPGDIEKLVTYAEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +A   ++ ++      R+++ G 
Sbjct: 177 GRAHLLGFGSFEGVKQTKGELYDYLKAHDCLLFLNESNADLVDMARQ--REMNRIITYGQ 234

Query: 273 QGKFIHLKKVCAIHNKQQV------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                   +V               T   + + ++    L G + + N   A  + +  G
Sbjct: 235 SDDANVRGEVIDCAPFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMFAAITIGLHFG 294

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    +   LE       R +   T ++   I   Y    +S+   ++N + +     + 
Sbjct: 295 VTPEQINHALESYVPANNRSQLEVT-AKNKLIVDAYNANPSSMAAAIENFKLMNVEHKMA 353

Query: 387 VFGCGGD----RDQGKRPIMGKIALDLADIAIV-------TDDNPR-SEDPEKIRAEIIH 434
           + G   +     D   + ++ K+  D      +       T  N R   + ++++AEI  
Sbjct: 354 ILGDMRELGEVSDLEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRKFRNVDEVKAEIAA 413

Query: 435 GIPG 438
             P 
Sbjct: 414 HCPE 417


>gi|291288107|ref|YP_003504923.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885267|gb|ADD68967.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 452

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 146/449 (32%), Gaps = 43/449 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I     DSR  + G  FVA  G K DG+ +    +  GA  ++V+     +D    I
Sbjct: 21  DQQIRNFVIDSRQSRKGSCFVAFKGEKTDGNRYAEAVLQSGACMVIVTD----EDVYEQI 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N   ++V +    L    +   G++    +A+TG+ GK++    + ++ +        
Sbjct: 77  EGNK--VLVADALYALKDLGAYNLGRYKGRKIALTGSVGKTTTKELISEVLRTRKRVYTA 134

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +     A           Y             +   +  +S G  +     IK   
Sbjct: 135 YGNFNNELGVAICAANMKMGTSY-------------SVFEMGTNSAGEIEALSKYIKPDI 181

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGC 265
              T +G  HI   +  +     K+ +   +   +   ++Y  D+  + V          
Sbjct: 182 CVVTGIGHAHIGRFEGIEGLAKEKLSIVSGM---QKRGVLYIADSCRRFVTSEVLEKTDV 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R          I       +      T       + F         V N+L A  + +A 
Sbjct: 239 RYFGTDMASHIILGDVNRTVDGDFYFTAVTRNTPYCFKLNHFYSHFVNNSLPAIAIGMAA 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGR 383
           G+    V++ + K     GR         G ++  D Y     S+   + N+  I    +
Sbjct: 299 GLSYTDVMKGIRKFQPKDGRGRIKEV--DGIKVIDDTYNAGFESVISAMTNLAGIPVEKK 356

Query: 384 IIVVFGCGG---DRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              +   G      +     +M K + L   +   V  +  R E    I+          
Sbjct: 357 TAFIGEMGEIEGYEEMLYFKLMKKASELTNVEFVFVGKNFARFERTGNIK---------- 406

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                R EA++  I  ++   VL  A +G
Sbjct: 407 -VVQTREEAMQ-LISKVSCGTVLFKASRG 433


>gi|149201998|ref|ZP_01878972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
 gi|149145046|gb|EDM33075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
          Length = 478

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 91/459 (19%), Positives = 163/459 (35%), Gaps = 47/459 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R ++ G +FVA+   + DGH F+ QA+A+GA A +VS           + +  
Sbjct: 24  TGVSIDTRTLKPGDLFVALNAAR-DGHEFVAQALAKGAAAALVSR------IPEGLPAEA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V++ +K L         +    ++AVTG+ GK+S    ++ +    G +       
Sbjct: 77  PLLIVEDVQKGLEDLGRAARARSEARVVAVTGSVGKTSTKEMLRDVLGHQGRTHA----- 131

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ +       V     +H G         +      
Sbjct: 132 ---------AEASYNNHWGVPLTLARMPVDTEFAVIEIGMNHPGEIAPLACMARPHVAVI 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++  +        K  +FE L P    A+I AD A +  +  +A     R+LS
Sbjct: 183 TTVAAAHLEAFENIDGIAKEKASIFEGLEP-GGVAVINADIATTPILRAKAAQHAARILS 241

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  +G    L  V    +              +   +PG     NAL    +   +G D
Sbjct: 242 FGTARGAHHRLLNVELHDHVTVGHARAWRSPLVYKVGVPGRHFAMNALAVLAVAQVLGCD 301

Query: 329 SALVLEHLEKLHVVPGRFEF------VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
            A+ +  L       GR         + ++     +  D +     S+   L+ +     
Sbjct: 302 RAVAMADLASWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAALEVLAAAHP 361

Query: 382 ---------GRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRA 430
                    GR I + G   +    +  +   +A    +A I  +    PR      I  
Sbjct: 362 RDGVGRVSRGRRIAILGDMLELGPDEAAMHAGLADLPYMARINEIHCVGPRMRALWDILP 421

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
           E   G        +  E    A  +++  DV++V G KG
Sbjct: 422 EARRG----RWVASAEELAAQAHRLIDAGDVVLVKGSKG 456


>gi|312880222|ref|ZP_07740022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783513|gb|EFQ23911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
          Length = 467

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 156/430 (36%), Gaps = 32/430 (7%)

Query: 15  INQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +  L     +  +R     V  DSR +  G +F A+ G + DGH F+  A+A GA A++ 
Sbjct: 11  VAALFGGGAEGPDRPFPFSVCYDSREVTPGCVFAALPGERTDGHRFVGDAVAGGASAVLA 70

Query: 74  SSAYSLQDFSATI-RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                 +  ++    ++   + VD+    L   A +   +    +  +TG+ GK++    
Sbjct: 71  LRGPGREARASLPGSADVAWVFVDSVEDALVTLARQWRERVAPKVYGITGSVGKTTTRDL 130

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + ++      S       +T    A       P    L      +   G  H        
Sbjct: 131 ILRVLASVEPSHGAPKSYNTRIGCASTVLGMPPDTRNL------VLEYGTNHP------- 177

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G     +          T +   H++     Q    AK+ L E    +        D+A 
Sbjct: 178 GEISALVASFPPQELFLTEVCPAHLEGLGDVQGVLAAKLELLESRQAER--VTYNFDNAL 235

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKDFDFLFPLPG 308
            ++ +  A  +  R L VG  G  + +++       +     + +   G+ + F   L G
Sbjct: 236 LRDAL-HASFSAERSLGVGVSGGEVRIERAEPRWTSKGPVLDLHLREAGRSWSFASRLWG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSN 367
               Y    A  + +  G+    + E  E    +PGR   V ++  G  I    Y     
Sbjct: 295 RQHAYAWAFAWSVALRRGVGEEALREVAETSLPLPGRGR-VLSDREGLWILDETYNANPA 353

Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNP 420
           S+ + L+N+  ++   +G    + G   +  +      R I+GK+      + +  +  P
Sbjct: 354 SMGVALENLHLLSSQGAGVSWAILGGMRELGETSPHWHREILGKLRGVDGAVLVGEEWAP 413

Query: 421 -RSEDPEKIR 429
            RS+ P+++R
Sbjct: 414 LRSDLPDQVR 423


>gi|149186206|ref|ZP_01864520.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
 gi|148830237|gb|EDL48674.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
          Length = 493

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 169/473 (35%), Gaps = 56/473 (11%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           ++      + ++  V  DSR +  G +FVA+ G   DGH F+ +           + A  
Sbjct: 35  AVGGTASSDFQVAGVEMDSRDVVHGDLFVALKGEAMDGHRFLDK-----------AFANG 83

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                     + P ++V++T + L   A     +    I+ VTG+ GK+ V   +    +
Sbjct: 84  AAAAIVDRPVDYPHILVEDTTEALKALARAARNRTEAKIIGVTGSVGKTGVKEAIFASLE 143

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQH 197
           R+   +      S              + + +  +L+ + ++       +  ++ G  + 
Sbjct: 144 RASRGAAHRSTRS------------YNNHVGVPLSLARMPARNRFGIFEMGMNNAGEIEG 191

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++      T +   HI+   + +A  +AK  +F  L P    A+I AD  + + + 
Sbjct: 192 LTTQVRPHVAVITTIAPAHIENLGSMEAIADAKAEIFAGLEP-GGVAVIPADSEHFERLR 250

Query: 258 KRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEF 310
             A      V+S G         L  + + +    VT         G    +    PG+ 
Sbjct: 251 LAALRMSASVVSFGRAANADVRLLDAIPSANGGSLVTCEFGNPAKGGGRLCYTVAEPGDH 310

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSN 367
            V N+L       A G D A     L ++  + GR    G ++ GG+  +    Y     
Sbjct: 311 WVINSLAVMATVRAAGGDMAAAGLALAEMGGLKGRGARHGIDAPGGKALLIDESYNANPA 370

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVTDDNPRSE 423
           S+   L  +    S R I V G   +           ++        D A++  D  R  
Sbjct: 371 SMRATLAQLGQTPSSRRIAVLGSMKELGDFAAKFHAGLSEPLIAADVDYALLVGDEMR-- 428

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIE-----AIRTAIEMLNK-----QDVLVVAG 466
               +  E+  G P F   GN +E     +   AI +L +      D ++V G
Sbjct: 429 ---ALAREL--GKPAFNSLGNPLEWEHCNSAEEAIGLLQEFGIVAGDAVLVKG 476


>gi|183602420|ref|ZP_02963786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683265|ref|YP_002469648.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191226|ref|YP_002968620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196632|ref|YP_002970187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218339|gb|EDT88984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620915|gb|ACL29072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249618|gb|ACS46558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251186|gb|ACS48125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177342|gb|ADC84588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794219|gb|ADG33754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 496

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 79/460 (17%), Positives = 139/460 (30%), Gaps = 56/460 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V +DSR +  G +FVAI G   DGH F+  A  QGA A +V              +  
Sbjct: 31  TSVVTDSRQVVDGALFVAIAGEHVDGHDFVDAAARQGAAAALVEREIK--------SAPI 82

Query: 91  PILVVDNTRKFLSLFA-----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +VV +T   L   A     +R     P  I+ +TG+ GK++    +  +    G +  
Sbjct: 83  AQIVVPDTVAALGALAKANLEARKAIDEPFTIIGITGSVGKTTTKDLLHALLSTQGETVA 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +                 YL                + A+  G            
Sbjct: 143 PKGSFNNEIGLPLTALKVGERTRYLVAE-------------MGANHIGEIARLTKIAPPD 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                 +G  H+    + +    AK  +     P  +  ++ ADD     V   +  A  
Sbjct: 190 IAVVLKVGVAHLGEFGSVERIAQAKSEIVRGEAP-NAITVLNADDE---RVAAMSGIAKG 245

Query: 266 RVLSVGYQGK-------FIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNAL 316
            V   G           ++    +        V   +S +G +      + G   V NAL
Sbjct: 246 DVFWFGIDKAQAHDIDGYMAADDIALDDLGHPVFELVSSQGVEQRVSLGIGGRHNVMNAL 305

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVD-YAHTSNSLEM- 371
            AA +   +G+    + + L     +      V    R G    +  D +    +S+   
Sbjct: 306 AAASVAKLLGMPLERIAQVLADTRRISPHRMAVSEVERDGARFTLIDDSFNANPDSMRAG 365

Query: 372 --ILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAIVTDDNPRS 422
              L   R         + V G   +    +  +   I     D     +  V   +  S
Sbjct: 366 IDGLMAWRSQEDQQPYRVAVLGSMLELGSDEHNLHRTIGAYALDGGVDALICVGGGDDAS 425

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +   +  +I  G     +  +    +R         D++
Sbjct: 426 LN--ALAQDIADGGTEAKDADDMRP-VRAVKTTQQADDLI 462


>gi|46446887|ref|YP_008252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanine-ligase murF [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400528|emb|CAF23977.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine-ligase murF
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 445

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 161/481 (33%), Gaps = 64/481 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++  +  K   +++N      +   E  +     DSR  +   +FVA+ G   DGH ++
Sbjct: 1   MRI--MTLKQIAKILNS----SLPEVEGVVKGFCVDSRLTKKNEVFVALRGEHVDGHAYL 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +   +GA A +V   Y    F         +   +N    L + A +   K    ++AV
Sbjct: 55  NEVKQKGALAAIVDQNYQGPVF------GMHLFRTENPLLALQMLAQKCLEK-TSRVVAV 107

Query: 121 TGTSGKSSVASFVQQICQR-------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG+ GK++   F++ + ++        G S+ Q+G   T+ +                  
Sbjct: 108 TGSIGKTTTKEFIKTLLEQRYVTAASQGNSNSQVGLPLTVLNHTTGT------------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 + +  + +  +  G     ++         T     H    +T +     K  +
Sbjct: 155 ------EDILVLEMGMTEPGQLSTLVNIAHPEVSVLTTAALVHACRFETLKDIALTKAEI 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQV 291
           F     +         D   +     A    C+ +S          HL+ V      ++V
Sbjct: 209 FSHSHTRLGVV-----DREIEAYETIAQIGECKKISFSTVSSRADYHLETVN-----EEV 258

Query: 292 TISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  EG+        LPG+  ++N L A  +     +    + + +  L +   R +FV 
Sbjct: 259 RLKTEGQSISLGKMCLPGKHNLHNLLAAIAVARYFELTWNEIKQAIPFLKLPERRLQFVQ 318

Query: 351 TNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGG---DRDQGKRPIMGKI 405
               G     D Y  +  S++  L+ +   T  G  I V G               +G+ 
Sbjct: 319 KE--GVYFLNDSYNASELSVKSALETLPNATGKGYKIAVLGSMMELGHFSDECHQRVGEF 376

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AL+  D            +   I                R E I T  + L   DV+++ 
Sbjct: 377 ALNYVDKMYCL-----GAECLPIVEVWKKANRPVELFMERSELISTLKKNLKPADVVLLK 431

Query: 466 G 466
           G
Sbjct: 432 G 432


>gi|325205486|gb|ADZ00939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M04-240196]
          Length = 452

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 148/421 (35%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L + A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALINNALRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGVDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|38234177|ref|NP_939944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200439|emb|CAE50127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium diphtheriae]
          Length = 496

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 143/436 (32%), Gaps = 51/436 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + DL  +    ++   ++      E  +   V  DSR +  G +FVA+ G + DGH F+P
Sbjct: 1   MIDLTVEQIARIVGG-TLTQGTDPETVVTGPVEFDSRKVSEGSLFVALAGARVDGHDFVP 59

Query: 62  QA---------------IAQG-AEAIVVSSAYSLQD----FSATIRSNTPILVVDNTRKF 101
            A               I  G A AIVV  A   Q     ++     +  +  V    + 
Sbjct: 60  AALESGAAAALVAHPVKIDSGLAPAIVVPPATGQQQSANSYATEHDEDGSVAAV---LQG 116

Query: 102 LSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           + L A R+          ++ VTG++GK+S    +  I      +    G  +       
Sbjct: 117 MGLIARRVIDTLTAQGLTVMGVTGSAGKTSTKDMLASILSNQAPTVAPPGSFNNEIGHPY 176

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                T    YL    + +S++G+ H            H         G   N+G  H+ 
Sbjct: 177 TALRCTEQTRYLV---AEMSARGIGH----------IAHLAQIAPPKIGVVLNVGTAHLG 223

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              +++    AK  L E L P +  A++ ADD     +  R         +         
Sbjct: 224 EFGSREVIAQAKGELVEAL-PHDGVAVLNADDDLVAGMRTRTDAKVITFSANSQDADVYA 282

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                  + + + T+ +   +      + G+ QV NAL A     A GI    + E L  
Sbjct: 283 TDIELDDYARARFTLHIGEAENVVTLRVAGQHQVSNALAATAAAYAAGIAIDDIAEALSN 342

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG--------RIIVVFG 389
                     +   S G  I  D Y   + S+   L  + T                V G
Sbjct: 343 HLGASAHRMALMHRSDGATIIDDAYNANTESMRAGLTALSTTAHNKSHKGEASHAWAVLG 402

Query: 390 CGGDRDQGKRPIMGKI 405
              +  +       +I
Sbjct: 403 PMSELGEESVAAHEEI 418


>gi|192292418|ref|YP_001993023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286167|gb|ACF02548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris TIE-1]
          Length = 479

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 159/479 (33%), Gaps = 41/479 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  Q L   D   +   ++        R +  +S DSR +  G  + AI G+  DGH F+
Sbjct: 1   MSKQPLWTSD--AMAEAMAATRSGTLPRDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA   VV  A       A    + P+LVVD+  + L         + P  ++AV
Sbjct: 59  AAALNAGAALAVVEKAQR-----AKFAPDAPLLVVDDVLEGLRQLGIAARSRLPAKVIAV 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    ++ +    G +   +   +                 +           
Sbjct: 114 TGSVGKTSTKEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPVDSRF----------- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  +  G  +  +  ++      T +   H+++    +   +AK  +F  L P 
Sbjct: 163 --AVFEIGMNHAGEIEPLVKMVRPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEP- 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK 298
              A++  D      +   A  A   R+++ G        L  V    +   V  S+ G 
Sbjct: 220 GGIAVLNRDTPMFDRLCSNALRANVGRIVTFGADPAADARLLDVALHADCSAVHASILGH 279

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGG 356
           D  +   +PG     N+L         G D AL    L ++    GR   + +   S   
Sbjct: 280 DVTYKLGMPGRHMALNSLAVLAAAELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEA 339

Query: 357 RIYVD-YAHTSNSLEMILKN---IRTITSGRIIVVFGCGGDRDQG----KRPIMGKIALD 408
            +  + Y     S+   L           GR I V G   +         R +   +  +
Sbjct: 340 TLIDESYNANPASMAAALGVLGRAEISGQGRRIAVLGDMLELGPRGPELHRGLEEAVRAN 399

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAG 466
             D+        R+        + +         G+   A+    +  +   DV++V G
Sbjct: 400 GIDLVFCCGPLMRN------LWDALSSGKRGGYAGD-AAALESQVVAAIRAGDVVMVKG 451


>gi|269127140|ref|YP_003300510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
 gi|268312098|gb|ACY98472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
          Length = 475

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 154/471 (32%), Gaps = 41/471 (8%)

Query: 14  LINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L++     P    +  +   V  DSR +  G +FVA+ G + DGH F          A V
Sbjct: 11  LLSGGKATP-GAEDALVTGPVVIDSRAVVPGALFVALRGERADGHDFA--------AAAV 61

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVAS 131
            + A  +           P ++VD+    L   A  +  + P+  ++ VTG++GK+S   
Sbjct: 62  AAGAAGVLAQRPLDDPALPAVIVDDAVAALGRLAGGVLARLPQVTVVGVTGSAGKTSTKD 121

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + Q+ +R G +    G  +                 +L              + + A  
Sbjct: 122 LIAQVLRRHGPTVAAEGSFNNEIGHPLTVLRADEQTRHL-------------VLEMGARG 168

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G   +         G   N+G  H+     ++A   AK  L E L P +  A++ ADD 
Sbjct: 169 IGHVAYLCRVAPPRIGVVLNVGSAHLGEFGDREAIARAKGELVEAL-PADGAAVLNADDP 227

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGE 309
             + +  R       VL+ G             +  +   + T+            L G 
Sbjct: 228 LVRAMAARTA---AEVLTFGRAADADVRAADETLDARGRPRFTLVTPRGSAPVELRLHGR 284

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AA + +  G+    +   L +   +      V     G  +  D Y     S
Sbjct: 285 HAVGNALAAAAVALRAGMAVEAIARALSQAAPLSRWRMEVTERPDGVTVVNDAYNANPES 344

Query: 369 LEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +   L+ +  +     GR     G   +          KI   +A            E  
Sbjct: 345 MRAALEAVAHMARAAGGRAFAALGEMAELGARSVAEHEKIGQHVARNGYAGLV-AVGEAA 403

Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG---KGHE 470
             +              ++  +   A+    E L  +DV++V G    G E
Sbjct: 404 APLLDGARQAGSWTGECVQVDDVGAAVTALSERLRPRDVVLVKGSRVAGME 454


>gi|227874167|ref|ZP_03992371.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
 gi|227839988|gb|EEJ50414.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
          Length = 466

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 160/449 (35%), Gaps = 56/449 (12%)

Query: 59  FIPQA---IAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           F+PQ+   I  G E  V ++A S   ++F    R   P++   +    L           
Sbjct: 58  FVPQSRQNIQDGVELCVYTAAISEDNEEFQEVKRRGIPMMTRADL---LGRIMQNY---- 110

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYL 170
               + V GT GK++  S + +I   +        PT T+    +D   N     S I+L
Sbjct: 111 -ATAINVAGTHGKTTTTSMIGEILMEAAKD-----PTITVGGMMKDIGGNLRVGQSDIFL 164

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           A+A  Y +S                               N+  DH+D+ +      ++ 
Sbjct: 165 AEACEYTNSFHSFF-------------------PSIAVILNVEADHLDFFKDINEIRDS- 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ- 289
            + F E LP++   +I  D  + +  ++       ++++ G+         +   H  + 
Sbjct: 205 FKTFIERLPEDGLVVINKDIPHYEYFLEDLGGR--KIITFGHGDADYTANFISYDHYARP 262

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+   G+D       + GE  +YN+L A  +   +GI    + E L +      RF+ 
Sbjct: 263 SFTLFEHGEDRGKVTLSVTGEHNIYNSLSAIAVARYLGISFEDIKEALHRFSGTDRRFQR 322

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G    G  I  DYAH    +   +   +     ++ +VF                 AL 
Sbjct: 323 KG-KINGFTIIDDYAHHPQEIAATIAAAQKYPHRKLWIVFQPHTYSRTKALMEDFAGALA 381

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            AD  I+ D     E        + +R  ++          +     +  +E + + D+L
Sbjct: 382 QADEIILADIYAAREKNTVGISSDDLRKLMLSQNTNVYYIPDFPSIEKYILEHVKEGDLL 441

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +  G G+    IV  GE  +S++     E
Sbjct: 442 ITMGAGN----IVDVGEDLLSLEGAEREE 466


>gi|158834082|gb|ABW81846.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 121/250 (48%), Gaps = 7/250 (2%)

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DYH     
Sbjct: 12  SAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHGDMAN 71

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKK 281
           Y  AK  LF  L  +    II  DD   +  +    NA        +  G +G ++  +K
Sbjct: 72  YEIAKKSLF--LDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGAWLSAQK 129

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +    N   +         +   PL G F V N L+     +A+      +L+   KL  
Sbjct: 130 IQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLNALLKAASKLQP 189

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKRP+
Sbjct: 190 IPGRMEVFKKVGR-PTVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKRPL 248

Query: 402 MGKIALDLAD 411
           MGKIA  LAD
Sbjct: 249 MGKIAETLAD 258


>gi|94269093|ref|ZP_01291368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [delta proteobacterium MLMS-1]
 gi|93451353|gb|EAT02221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [delta proteobacterium MLMS-1]
          Length = 326

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 151/321 (47%), Gaps = 52/321 (16%)

Query: 225 AYFNAKMRLFEELLPKESPAIIYADD-----------------------AYSKEVMKR-- 259
           +YF AK RLFE+ L   + A++ A +                        ++  + ++  
Sbjct: 1   SYFAAKKRLFEQHLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLR 60

Query: 260 -----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                A     R+   G+    + L    +  N  +  ++    +++   PL G+F + N
Sbjct: 61  LCGQTAAGRAPRLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLN 120

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L  A   +A+ +    +   L      PGR E    + RG +++VDYAHT  +LE +L+
Sbjct: 121 LLGVAATGLALEMSPEAIAAALAVAPPPPGRLERF-VDRRGMKVFVDYAHTPAALEQVLR 179

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R   S R+IV+FGCGGDRD+GKR  MG+IA  LADI ++T DNPR+E+P  I A I  
Sbjct: 180 TLRPH-SRRLIVIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILATIEA 238

Query: 435 GIPGFIEKGNRIEAI---------------RTAIEM----LNKQDVLVVAGKGHETVHIV 475
           G+ G   +  R+EA+               R AI       +  DV+V+ GKGHET   +
Sbjct: 239 GVKGTGLQRCRLEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHETYQQI 298

Query: 476 TNGEKKMSVDCDIIREILGLI 496
            + + +   D   + E L ++
Sbjct: 299 GS-QCRYFDDRREVAEGLAVV 318


>gi|299142150|ref|ZP_07035283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
 gi|298576239|gb|EFI48112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
          Length = 438

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 151/424 (35%), Gaps = 40/424 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++++SR+     IF+A+ G   DG+ F   A+ +G    ++      +        N  +
Sbjct: 16  ITTNSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAE------ADNDRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    V  +         +     T
Sbjct: 70  ILVDDCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSAVLAE------RYNVMHT 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D       P  L +  +   +  +  V + AS  G  +  +   +   G  TN+
Sbjct: 124 EGNFNNDV----GVPKTLFRLNA---THEIAVVEMGASHPGDIEKLVTYAEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +A   ++         R+++ G 
Sbjct: 177 GRAHLLGFGSFEGVKQTKGELYDYLKAHDCLLFLNESNADLVDMA--CQREMNRIITYGQ 234

Query: 273 QGKFIHLKKVCAIHNKQQV------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                   +V               T   + + ++    L G + + N L A  + +  G
Sbjct: 235 SDDANVRGEVIDCAPFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMLAAITIGLHFG 294

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    +   LE       R +   T ++   I   Y    +S+   ++N + +     + 
Sbjct: 295 VTPEQINHALESYVPANNRSQLEVT-AKNKLIVDAYNANPSSMAAAIENFKLMNVEHKMA 353

Query: 387 VFGCGGD----RDQGKRPIMGKIALDLADIAIV-------TDDNPR-SEDPEKIRAEIIH 434
           + G   +     +   + ++ K+  D      +       T  N R   + ++++AEI  
Sbjct: 354 ILGDMRELGEVSELEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRKFRNVDEVKAEIAA 413

Query: 435 GIPG 438
             P 
Sbjct: 414 HCPE 417


>gi|54023730|ref|YP_117972.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
 gi|54015238|dbj|BAD56608.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
          Length = 499

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/507 (20%), Positives = 173/507 (34%), Gaps = 76/507 (14%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVS----SDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +I     E+ + +        + ++  V+     DSR I +G +F+A+ G + DGH +  
Sbjct: 1   MIEMTLREIADVVGGTLHDAPDPEVR-VTGTAEFDSRRIGSGDLFLALPGERADGHDYAA 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-------NTRKFLSLFAS------- 107
                       + A       A      P +VV+        T   L+  A        
Sbjct: 60  -----------AAVAAGAAAVLAARPVGVPAVVVEPRRCSVPATSMALAHDADGSGAAVL 108

Query: 108 ------------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
                       RL       ++ VTG+SGK+S    +  +    G      G  +    
Sbjct: 109 AALAALARASVERLSAAGGLTVVGVTGSSGKTSTKDLLAAVLAPLGPVVAPPGSFNNELG 168

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   T    +L      +S++GV H               +      G   N+G  
Sbjct: 169 HPWTALRATADTRFLVL---EMSARGVGH----------IAALAEVAPPRIGVVLNVGTA 215

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+    +++A   AK  L E L P +  AI+ ADD     V   A     RV+ VG  G 
Sbjct: 216 HLGEFGSREAIARAKGELVEAL-PADGLAILNADDPN---VAAMAARTAARVVRVGLSGD 271

Query: 276 FIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             +      +  + +   T+       +    + GE QV NAL AA +    G D A V 
Sbjct: 272 ADYRASEVRLDEQARATFTLHTPAGSTEIRLGVHGEHQVGNALAAAAVASECGADLATVA 331

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-----TSGRIIVV 387
             L     V  R   V T + G  +  D Y    +S+   LK + T+        R   V
Sbjct: 332 AALSGARAVSERRMDVRTTADGVTVVNDSYNANPDSVRAALKALVTMSRAGERPRRSWAV 391

Query: 388 FGCGGDRDQG---KRPIMGKIA--LDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIE 441
            G   +  +    +   +G++A  LD+  + +V    P R+     +           + 
Sbjct: 392 LGEMAELGEESVLEHDGIGRLAVRLDVDRLVVVGTGRPSRAMHQGAVMEG--SWGEESVL 449

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV-AGK 467
             +   A+      +   DV++V A K
Sbjct: 450 VPDIDAAVALLDREVEPGDVVLVKASK 476


>gi|85703613|ref|ZP_01034717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
 gi|85672541|gb|EAQ27398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
          Length = 476

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 168/463 (36%), Gaps = 47/463 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ VS D+R +Q G +FVA+   + DGH F+ QA+A+GA A +VS           +
Sbjct: 20  DWQVSGVSIDTRTLQRGDLFVALRAAR-DGHEFVAQALAKGAAAALVS------HVPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+V++ +  L         +    ++AVTG+ GK+S    ++ + +  G +   
Sbjct: 73  GGDAPLLIVEDVQAGLEALGRAGRARSRAKVVAVTGSVGKTSTKEMLRDVLRHQGRTHA- 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
                           +  +   +   L+ +       V     +H G         +  
Sbjct: 132 -------------AEASYNNHWGVPLTLARMPVDTQFAVIEIGMNHPGEIAPLARMARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++  +  +     K  +FE L P    A+I AD A +  +   A     
Sbjct: 179 VAVITTVAAAHLEAFEDIEGIAREKASIFEGLEP-GGVAVINADIATAPILRAEAVRHAA 237

Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           R+LS G  +G    L  V                   +   +PG     NAL    +   
Sbjct: 238 RILSFGTARGAHHRLLNVELHDRVTVGHARAWRSPLVYKVGVPGRHFAMNALAVLAVVQV 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEF------VGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
           +G D A+ +  L       GR         + ++     +  D +     S+   L+ + 
Sbjct: 298 LGCDRAVAMADLAGWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAALEVLA 357

Query: 378 T---------ITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPE 426
                     +  GR I + G   +    +  +   +A    +A I  +    PR     
Sbjct: 358 AAQPRDGVGRVARGRRIAILGDMLELGADEVAMHAGLADLPYMAQIDEIHCVGPRMRALW 417

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
           ++ +E   G        +       A  +++  DV++V G KG
Sbjct: 418 EVLSEGRQG-RWAATAEDLA---AQAHRLIDAGDVVLVKGSKG 456


>gi|72161515|ref|YP_289172.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
 gi|109892752|sp|Q47QW8|MURC_THEFY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71915247|gb|AAZ55149.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
          Length = 472

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/429 (20%), Positives = 144/429 (33%), Gaps = 47/429 (10%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENI 117
             GA   V  +A  + D      S+ IR   P LV    R  + L   A+          
Sbjct: 58  ELGATVHVGHAAEHVGDADTVVVSSAIRDTNPELVEARARNLRILPRAAALGALLLGRCG 117

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S +  + Q  G     +     +++                      
Sbjct: 118 VAVAGTHGKTTTTSMITVVLQHLGAMPGYVIGGQLVTTGLG------------------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +              +       TN+  DH+D +   +   + K   F   
Sbjct: 159 --ADAGADDIIVVEADESDGSFLMLSPRVAVITNVEADHLDNYGDLEEIHD-KFAAFIGR 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           + +    ++  DD  ++ V + A   G +VL+ G        ++ +         TI   
Sbjct: 216 VSE--TVVVGVDDPGARRVAEVARQRGLKVLTYGEADTADYRVRDITVDGFTTMFTIDPP 273

Query: 297 -GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G       PLPG     NA  A  +   IG D  + +E L +      RFEF G  + G
Sbjct: 274 TGDPVHCTLPLPGRHNTLNAAAAVAVADTIGYDPEVAVEGLAEFAGAARRFEFKG-EANG 332

Query: 356 GRIYVDYAHTSNSLEMIL---------KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             +Y  YAH    +   L         +  +   +GRI+V+F                 A
Sbjct: 333 VSVYDSYAHHPTEIAADLDAARAALDSQAAKGGKAGRIVVLFQPHLYSRTRIFAEEFAAA 392

Query: 407 LDLADIAIVTDDNPRSEDPE-KIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           L  AD  +V       EDPE  + AE+I    G      + +R  A+   + +    D++
Sbjct: 393 LTKADEVVVLGIYAAREDPEPGVTAELITERIGHDRVYYRPDRDAAVECVVSVAQPGDIV 452

Query: 463 VVAGKGHET 471
           +  G G  T
Sbjct: 453 LTMGAGDVT 461


>gi|304318121|ref|YP_003853266.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302779623|gb|ADL70182.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 875

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 169/424 (39%), Gaps = 39/424 (9%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +  K +         K    I++VTGT+GK++    + QI +  G   + +G TST   +
Sbjct: 460 DVAKAIVNMLYPKGSKATIPIISVTGTNGKTTTVRMISQILKMYG---YTVGMTSTDGIY 516

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             D  +          A + L+ + +    +E +  G+ +  L       G  TN+  DH
Sbjct: 517 VDDVCIYKGDNSGPKSARTCLADKNIDAAVLETARGGIVREGLGYDLADVGIITNISEDH 576

Query: 217 I--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           +  D  +T +     K  L  E + K+  +++ ADD  +  + KRA     +++      
Sbjct: 577 LGIDGIETLEDLAFVKS-LVVEAVKKDGYSVLNADDPMTPYISKRAKG---KIIYFSMHE 632

Query: 275 KFIHLKKV-----CAIHNKQQVTISVEGK--------DFDFLFPLPGEFQVYNALVAAGL 321
             I +K+       +++ K    +   G+        +          + V NA+ A   
Sbjct: 633 NNITIKRHLEEGGISVYVKNDTIVIANGEIVPVAKIDEIPATLNGKVLYNVENAMAAIAA 692

Query: 322 CIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              I I   ++ + ++  +         F   N    R+ VDY H  +S+  ++++ R +
Sbjct: 693 SYGIKIPVNVISKGIKSFYCDENHNPGRFNIFNVGSFRVLVDYGHNIDSIRKVIESARKL 752

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-P 437
              R++ V G  GDR       +G+I  +  D   + +D + R   P +I   +  G+  
Sbjct: 753 NPNRLLGVIGVPGDRSDSSTLKIGEICGEGFDKVYIKEDLDLRGRKPGEIAKLLEIGVLK 812

Query: 438 GFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETV----HIVTNGEKKMSVDCD 487
           G + K +       ++A++TA+      D++V+    +E       ++ N  K    D D
Sbjct: 813 GGLSKEDVNVILKEVDALKTAMYEAQPGDLIVIF---YEKYAPVVDVINNFIKISQFDID 869

Query: 488 IIRE 491
             +E
Sbjct: 870 ESKE 873


>gi|326798766|ref|YP_004316585.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
 gi|326549530|gb|ADZ77915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
          Length = 437

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 143/385 (37%), Gaps = 28/385 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++  ++S+D+R+I  G IF A+ G   +G+ F  +A+  GA   +V     + D      
Sbjct: 11  QECQKISTDTRNILPGSIFFALSGATFNGNQFAEKALELGARLAIVDEPIPIVDERIE-- 68

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                 VV N  + L   A     +    ++ VTGT+GK++    +Q +  +        
Sbjct: 69  ------VVSNVLETLQNLARYHRDQLQIPVIGVTGTNGKTTTKELLQSVLSQKFNVYATK 122

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G          +       P+ +   L+  S+  +  + + A+  G         +   G
Sbjct: 123 G----------NLNNHIGVPLSV---LAIDSAIELAIIEMGANHIGEIAFLCGIARPELG 169

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G+ H++   + +    AK  L+E L   +    +  D+ +   +         ++
Sbjct: 170 LITNVGKAHLEGFGSFEGVKQAKGELYEWLEEHKGVLFLQGDNNHLLSMANN--KTFKQI 227

Query: 268 LSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCI 323
           ++ G          L  V  + N    +I   G D   +   L G + + N L A  + +
Sbjct: 228 ITYGLDKSNNISGELLSVNPVLNLGWSSIKAYGYDRQVVPTHLTGSYNLENVLAAVAVGL 287

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G++   +   +        R +   T  +   I   Y   ++S+   L N+ +I + +
Sbjct: 288 YFGLNPEEINRGITAYSPTNNRSQITQTE-KNTVICDYYNANASSMWAALDNLESIHAEK 346

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALD 408
            + + G   +  +       ++   
Sbjct: 347 KVSILGDMFELGEEAPTEHRRLIER 371


>gi|257092207|ref|YP_003165848.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044731|gb|ACV33919.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 462

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/433 (20%), Positives = 150/433 (34%), Gaps = 58/433 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+A+VVSSA    +       +  + VV   +  L+       G    
Sbjct: 56  GH---AAANVNGADAVVVSSAVRADNPEVIAARSRQVPVVPRAQM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S V  I    G+  +F IG     +           S  +L    
Sbjct: 108 --IAVAGTHGKTTTTSLVASILAAGGMDPTFVIGGRLNAAG----ANACLGSGDFLV--- 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                +  +    TN+  DH++ +             F
Sbjct: 159 AEADESDASFLF---------------LSPVISVVTNIDADHMETYGHDFNRLKQAFVEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----Q 290
            + LP    A++ ADDA  +E+M +      ++++ G         +       Q     
Sbjct: 204 LQRLPFYGVAVLCADDANVREIMPQVSK---QIVTYGLDPAANFYAENVTAEGGQMRFDC 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V ++           LPG   V NAL A  +   +G+    +L+ L     V  RF+  G
Sbjct: 261 VRVNGSVSRLPVTLNLPGRHNVLNALAAIAVASEVGVADDAILKALTDFRGVGRRFQRYG 320

Query: 351 T----NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                +     +  DY H    +   L   R      R+++ F          R      
Sbjct: 321 EIALADGGCFTLVDDYGHHPVEMSATLTAARGAFPGRRLLLAFQPHRYTRTRDRFEDFVK 380

Query: 406 ALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEM 455
            L   D  ++T+    SE P          RA  + G   P F+E  G+  +AI   +++
Sbjct: 381 VLSGVDALVLTEVYAASEQPIVAADGRALARALRVAGKVEPVFVESIGDVPQAI---LDI 437

Query: 456 LNKQDVLVVAGKG 468
           +   DV++  G G
Sbjct: 438 VRDGDVVITMGAG 450


>gi|300933358|ref|ZP_07148614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium resistens DSM 45100]
          Length = 516

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 95/501 (18%), Positives = 164/501 (32%), Gaps = 59/501 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + +L      E+     +      + K+   V  DSR I+ G IF+A+ G + DGH +  
Sbjct: 13  MIELTVGKIAEITGG-ELVDGADPDTKVLGPVEFDSRRIKPGGIFMALPGAQVDGHDYAA 71

Query: 62  Q---------AIAQ--GAEAIVV-SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-- 107
                      + +  GA A+V  S     +  +A+   +            +   A   
Sbjct: 72  SAAEQGAALLVVGKRVGAPALVAPSVELRQEASNASAFEHDTQGHGAAVLAAIDRLARFN 131

Query: 108 --RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
              L  +H   ++ VTG++GK+S    +  I + +G +    G  +              
Sbjct: 132 TDALVAEHGMTVVGVTGSAGKTSTKDLIGAILREAGPTVAPPGSFNNEIGLPYTALRAEE 191

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
              YL    S +S++GV H           +H  +      G   N+G  H+    ++ A
Sbjct: 192 GTKYLV---SEMSARGVGH----------IRHLTEVTPPNIGVVLNVGSAHLGEFGSRDA 238

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              AK  L E L P+   A++ ADD     +  R H    R  S   +      ++V   
Sbjct: 239 IAQAKGELVEAL-PENGLAVLNADDDKVAAMAARTHARVVR-FSTSQETCEWAGREVAVD 296

Query: 286 HNKQQVTI-----------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +    + +              G        + G  QV NAL AA + +  G+ +  V  
Sbjct: 297 YYASDIQLDEVARARFALHHPYGDPVAVELGVFGAHQVSNALAAAAVGMECGMSATDVAR 356

Query: 335 HLE-KLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVF 388
            L   +     R +       G  I  D Y     S+   +  +    SGR       V 
Sbjct: 357 ALNGHVAASVNRMDVRTRARDGVTIINDSYNANPESMRAGIDALAYTASGRDGAESWAVL 416

Query: 389 GCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           G  G+           +   L+        IV        + + +               
Sbjct: 417 GQMGELGDDATEAHADLGHSLSQRRIRHAVIVG----NGVNQQALAHAAREDGVDTHVVE 472

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +   A+      L K DV++V
Sbjct: 473 DADAAVNFLDLSLRKSDVVLV 493


>gi|41407999|ref|NP_960835.1| hypothetical protein MAP1901c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396353|gb|AAS04218.1| MurF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 519

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/517 (16%), Positives = 146/517 (28%), Gaps = 83/517 (16%)

Query: 3   LQDLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + +L      +++      I       R++   V  DSR +  G +F+A+ G + DGH  
Sbjct: 1   MIELTVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHDH 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---- 115
                         + A       A      P +V        +L     +         
Sbjct: 61  AE-----------AAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAV 109

Query: 116 --------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
                                I+ +TG+SGK+S    V  +    G      G  +    
Sbjct: 110 LAALAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELG 169

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   T    YL              + + A   G      +      G   N+G  
Sbjct: 170 HPWTVLRATADTDYL-------------VLEMSARHPGNIAALAEIAPPAVGVVLNVGTA 216

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVG 271
           H+    +++A    K  L  + +P     ++  DD     + +       RV     +  
Sbjct: 217 HLGEFGSREAIARTKSEL-PQAVPASGVVVLNVDDPTVAAMAEVTAARVVRVGRAEHTEA 275

Query: 272 YQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPG--EFQVYNALVAAGLCIAIGI 327
                           +   T+     G        L    + QV NAL AA + +  G 
Sbjct: 276 GPSDVWAGPVSLDELARPGFTLYHRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGA 335

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG---- 382
               V+  L     V      V T   G  +  D Y    +S+   L+ +  I  G    
Sbjct: 336 TVEQVVAALAGAGPVSRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEP 395

Query: 383 -----RIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEI 432
                R   V G   +          +I      LD++ + +V     RS         +
Sbjct: 396 GAPARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSVSAMH-HGAV 452

Query: 433 IHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + G       G +   +   A+      L   DV++V
Sbjct: 453 MEGSWGSADKGAVNVPDAEAALELLRAELQPGDVVLV 489


>gi|322436309|ref|YP_004218521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
 gi|321164036|gb|ADW69741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
          Length = 456

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 169/474 (35%), Gaps = 35/474 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         + I+    F            S DSR I AG +F A+ G++ DGH ++
Sbjct: 1   MKLT---LGQVADWIHAEGDFTTSSEAV---GYSIDSRTIGAGELFFAVTGDRVDGHDYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN---TRKFLSLFASRLYGKHPENI 117
             A+A GA A VVS+ +   D    +     + V +      + + L A R+       +
Sbjct: 55  EAALANGAVAAVVSNRWLASDEPREVDPCKLLWVPEGEECVLRAMQLLALRVRQSWGGRV 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTG++GK++    V  +           G          +       P+ L   L   
Sbjct: 115 IGVTGSAGKTTTKEMVATVLSSQFSVLKSAG----------NLNNHFGVPLQL---LRLE 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +   V  + +  +  G  +   +  +   G  +N+   H+++     A   A  R   E 
Sbjct: 162 AEHEVAVIEMGMNHSGEIKRLAEIAEPQWGVVSNVAAVHLEFFPAGIAGIAAAKRELIEA 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP +  AI+  DD +   V          +  +G + +      V A  +    T+   G
Sbjct: 222 LPSDGLAILNGDDEW---VRGFGVGVDSVLYGLGDEAQVRATNVVEAGLDGVSFTVHAGG 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L G+  V NAL A  +    G+        L ++     R   +    RG +
Sbjct: 279 DTAEVHLALLGKHNVSNALAAIAVGWKSGMTLTACAAALAEMRATDKRGAVI--EWRGAK 336

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  D Y     +L+ ++  + +  + R IVV G   +       +       +A+  +  
Sbjct: 337 LLNDSYNSNPKALDAMVDALISTPATRRIVVAGEMLELGPEGPALHKACGRRMAEQGVDL 396

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVV-AGKG 468
               R      + A+++ G           EA        +   DV+++ A +G
Sbjct: 397 IVGVRG-----LAADLVSGAGEKAVFVETPEAAGNWLTANVKAGDVVLLKASRG 445


>gi|325261331|ref|ZP_08128069.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
 gi|324032785|gb|EGB94062.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
          Length = 458

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 150/429 (34%), Gaps = 56/429 (13%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
            +GA       A ++ D      ++A I  + P L+    RK   L  + L G+  +N  
Sbjct: 52  DKGARVFYGQKAGNIIDGIECVVYTAAISRDNPELIEAVARKIPMLTRAELLGQLMKNYK 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV+GT GK++  S +  I    G     I     + +   + R+      ++ +A  
Sbjct: 112 NPIAVSGTHGKTTTTSMISHILLE-GNLDPTISVGGILQAIGGNIRVGNSET-FITEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S    +                          N+  DH+D+ +  +   ++    F 
Sbjct: 170 YTNSFLDFY-------------------PRISVILNIEEDHLDFFKDLEDIRHS-FHQFA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LLP +   +I ++    +E+        C +++ G   K  +  +  +  +K  V+  +
Sbjct: 210 SLLPPDGTLVINSNIQNYEEI---CSGLNCGIITYGSSPKSDYSAQNISYDDKGCVSFDL 266

Query: 296 EGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             K       +  + G+  V NAL +  +   + I S ++ + L        RFE+ GT 
Sbjct: 267 LRKGIPAEHVVLSVTGDHNVSNALASIAVAELLDIPSDMIQKGLISFSGTDRRFEYKGT- 325

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I  DYAH    +   LK  +      +  VF                 AL  AD 
Sbjct: 326 LNGTTIVDDYAHHPTEIAATLKAAQHYPHQGLWCVFQPHTYTRTKAFFHEFAEALSHADH 385

Query: 413 AIVTDDNPRSEDP------EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            ++ D     E          +  E++      H  P F E  N         +     D
Sbjct: 386 VVLADIYAARETDTLGISSSDLAQELLNLGTDSHYFPCFEEIEN------FLKKNCKPGD 439

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 440 LLITMGAGD 448


>gi|269978141|ref|ZP_06185091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|306818514|ref|ZP_07452237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|269933650|gb|EEZ90234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|304648687|gb|EFM45989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 483

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 163/473 (34%), Gaps = 35/473 (7%)

Query: 13  ELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           + + ++          +I   V++DSR I+AG +FVA+ G   DGH F+     +G +  
Sbjct: 7   DALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVA 66

Query: 72  VV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----------I 117
           VV        +    +        +L VD+ +  L   A     +              +
Sbjct: 67  VVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSGKLKLV 126

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++     +Q+    G +    G  +                 YL       
Sbjct: 127 IGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYL------- 179

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + + AS  G  ++      L       +G  H++ + +  A    K ++   L
Sbjct: 180 ------VLEMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSL 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    AI+ ADD   + +  R         S    G      KV +  +    T+    
Sbjct: 234 GP-TGVAILNADDPRVEAMSGRTAGRLIYFSSQKATGVRATHLKVDSDSHAS-FTLHTPA 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G   V NAL AA +    G+ +  +   L            +   + G  
Sbjct: 292 GKAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADGVD 351

Query: 358 IYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI- 414
           +  D Y    +S++  L  +    +  R++ V G   +       + G+I    A + I 
Sbjct: 352 LIDDAYNANPDSVKAALDVLSKYAASRRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIP 411

Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +    P +++ E   + + H         +   A R   E++  +D++++ G
Sbjct: 412 VLIGVGPMAKNIELAYSALRHDGEHH-HTLDEKSAGRLLQEVVRPKDLILIKG 463


>gi|153854762|ref|ZP_01995996.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
 gi|149752669|gb|EDM62600.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
          Length = 459

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 150/421 (35%), Gaps = 59/421 (14%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGT 123
           G + +V ++A     ++F+  ++ N P+L    TR   L    +       +  +A++GT
Sbjct: 69  GIDVVVYTAAIHPDNEEFAEAVKQNLPML----TRAELLGQLMTNY-----DVPIAISGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  I   +G     I     + +   + R+   S  ++ +A  Y +S    
Sbjct: 120 HGKTTTTSMLSHIL-LAGEMDPTISVGGILKAIGGNIRVG-NSEYFVTEACEYTNSFLHF 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                                  G   N+  DH+D+ +      N+  R F +LLPK+  
Sbjct: 178 F-------------------PKIGVILNIDEDHLDFFKDLADIRNSFHR-FAKLLPKDGT 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDF-- 300
            +I  +    +E+     +  CRV+  G      +         K + +   V+  +F  
Sbjct: 218 LVINDNIPNLEEITA---DLDCRVIRYGNDSSLDYSATNVLHDKKGEASFDLVKSGEFID 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + G+  V NAL A  +   +G+    + E L+  H    RFE+ G    G  +  
Sbjct: 275 RISLSVNGDHNVSNALSAIAVADLLGVPFTKIKEGLKSFHGTDRRFEYKG-EVNGVTVID 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH    +   L   +      I  +F                 AL  AD  I+ D   
Sbjct: 334 DYAHHPTEINATLTAAKEYPHKEIWCIFQPHTYTRTKALFPEFVDALTHADHVILADIYA 393

Query: 421 RSEDP------EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E        E I  E+          P F E  N        ++   K DVL+  G G
Sbjct: 394 ARETDTLGMSSEMIAEELKKKGCDAYYFPSFEEIEN------FCLDKCQKGDVLITMGAG 447

Query: 469 H 469
           +
Sbjct: 448 N 448


>gi|114763025|ref|ZP_01442455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544349|gb|EAU47357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. HTCC2601]
          Length = 477

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/462 (18%), Positives = 157/462 (33%), Gaps = 51/462 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + + N VS D+R I  G +FVA+   + DGH F+ QA+  GA A +VS      D +   
Sbjct: 20  DWEANGVSIDTRTIAKGDLFVALKAAR-DGHDFVAQALENGASAALVSRIPEGVDPAN-- 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                +L+VD+ +  L         +    ++AVTG+ GK+S    ++ +          
Sbjct: 77  -----LLIVDDVQAGLEALGRAARARTRARVVAVTGSVGKTSTKDMLRVVLGAQSRVHA- 130

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
                           +  +   +   L+ +       V     +H G      D  +  
Sbjct: 131 -------------AEKSYNNHWGVPLTLARMPEDVDFAVIEIGMNHPGEIAPLSDMARPD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H+   ++ +     K  +FE L P    A++  D   S  ++        
Sbjct: 178 VAMITIVAPAHLAAFESLEGIAREKAAIFEGLEP-GGTAVVNGDLPVSPLLVAAGEARAA 236

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324
            V++ G      H      I +   V      +    F   +PG     N +    +  A
Sbjct: 237 HVITFGEAEGNHHRVTHVDIGDSTTVVQGRAWRSPVLFKVSVPGRHFAVNGMGVLAVAHA 296

Query: 325 IGIDSALVLEHLEKLHVVPGR-------FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +G+D AL +  L +     GR        + V T+     I   Y     SL   L+ + 
Sbjct: 297 LGLDRALAVTALGQWTAGAGRGQRETILLDPVETHLSLELIDDAYNANPASLAASLEVLA 356

Query: 378 ---------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSED 424
                     ++ GR I   G   +    +  +   +A   A    D+       P    
Sbjct: 357 GAKTRDGVGRVSHGRRIAYLGDMKELGATEAALHRAVADLPAMERIDLVHCVG--PLMRT 414

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +   +   G   + E  + + A       ++  DV++V G
Sbjct: 415 LWQALPQHKRG--HWTETADGMAA--RVRHDMDAGDVVLVKG 452


>gi|269127135|ref|YP_003300505.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
 gi|268312093|gb|ACY98467.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
          Length = 471

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/437 (21%), Positives = 148/437 (33%), Gaps = 55/437 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL-----FASRL 109
           + Q    GAE  V  SA  L D      S  IR + P L     R    L      A+ +
Sbjct: 54  LAQLAELGAEVFVGHSAEHLGDADTVVVSTAIRESNPELRAARERGLRVLHRSEALAALM 113

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
            G+     +AV GT GK++  S +  + Q +G   ++ IG     +    D+        
Sbjct: 114 AGR---RAVAVAGTHGKTTTTSMLTVVLQHAGLDPAYCIGGQLVTTGLGADDGTG----- 165

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                              EA        R           TN+  DH+D +   +    
Sbjct: 166 --------------DVFVAEADESDGSFLRYS---PHIAVVTNVEADHLDNYGAFEKVKE 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHN 287
              R  E + P     +  ADD  + E+   A   G  V++ G   G  + L        
Sbjct: 209 NFARFVERIEP-GGALVASADDPVAGELAGAARERGLTVVTYGESAGADLRLTGFTPRGL 267

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  I   G+       +PG    +NA  A  +   +G D A + + L        R E
Sbjct: 268 GSRFAIEGLGE---LTLEVPGRHYAHNATAALAVARLLGCDFATIRDGLASFTGSMRRLE 324

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--------TSGRIIVVFGCGGDRDQGKR 399
             G    G +++  YAH    L   L+  R           +GRI+ VF           
Sbjct: 325 RKGEAG-GVQVFDSYAHHPTELTADLQATREYLDQLAAEGRTGRIVAVFQPHLYSRTRFF 383

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 AL LAD+A+V D     EDPE     ++ A+ +           R +  +   E
Sbjct: 384 ATEFGRALGLADVAVVLDVYGAREDPEPGVSGRLIADAVPEGTRVEYVPVREQVPQVVAE 443

Query: 455 MLNKQDVLVVAGKGHET 471
           +    D+++  G G  T
Sbjct: 444 LARPGDLVLTLGAGDVT 460


>gi|87124205|ref|ZP_01080054.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
 gi|86167777|gb|EAQ69035.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
          Length = 460

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 155/477 (32%), Gaps = 47/477 (9%)

Query: 6   LIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L  +   E+    + +      ++ +  V +DSR + AG  FV +VG + DGH F     
Sbjct: 2   LTLRQLIEIWGDPVGLQHPDLLDQPLGPVCTDSRQLVAGAFFVPLVGERFDGHRF----- 56

Query: 65  AQGAEAIVVSSAYSLQD-------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
                  +V +A            +S  +        V++T +   + A     + P  +
Sbjct: 57  -------LVEAAARPAQAAVVATAWSDPVPPGLLHWRVNDTLEAYQMLARAHRRQLPCPV 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GK++    ++      G+     G  +             P            
Sbjct: 110 VAVTGSAGKTTTRELIRAALAPLGVVQASSGNNNNDVGVPLTVLGVGP------------ 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +     G         +      TN+G  HI    +++A   AK  +    
Sbjct: 158 -EHGAAVIEMGMRGPGEIARLSRCAEPQIAVITNIGTAHIGRLGSREAIAAAKCEI-TAS 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  +   +I A D   +  +  A     RV  V  +G  +   +  A  ++  V     G
Sbjct: 216 LAADGLVVIPAGDPLLEAAL--AQCWAGRVRRVALEGDALESVRPEAPVDRLGVVDVCAG 273

Query: 298 ----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +      PL G     N L+A  +   +G+  A     L+ L V            
Sbjct: 274 VLRLEGLAIRLPLEGRHNARNLLLALTVAQELGVPLAQ----LQDLKVAVPGGRNRRIEL 329

Query: 354 RGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G ++    Y  +  ++   L+ +    +GR   V G   +       +  ++A      
Sbjct: 330 AGIQVLDETYNASPEAVFAALE-LLAHQAGRRFAVLGAMLELGDQSVALHRQVAERAVAC 388

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            +       +       AE    +P         +A+      L   D L++ A +G
Sbjct: 389 GLDGLVLVMAGAEADAMAEAAAPLPRLQRVDTPEQAVPVLAAWLQSGDTLLLKASRG 445


>gi|258514343|ref|YP_003190565.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778048|gb|ACV61942.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 458

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 144/412 (34%), Gaps = 43/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE IV+SSA    +      +    P++             +R+  +     +A+ G  G
Sbjct: 65  AELIVISSAIPSNNPEWQFALHKGVPVIH-------RGEMLARMMDRQTG--IAIAGAHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +             + PT  I     D                   S G    
Sbjct: 116 KTTTTSMIALTL-----VKNNLDPTVLIGGELTDIGGNAKLGYGQYLVAEADESDGSFL- 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++      TN+  DH+DY++T++    A  + F   +P +  A+
Sbjct: 170 ---------------LLRPNIIVVTNIENDHLDYYKTEEKITEAFSK-FIRKIPSDGMAV 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-F 304
           +  DD   K +  +     C+  SV        ++ +     K +V +   G     L  
Sbjct: 214 LCTDDRQLKHMSTQLKRP-CKTYSVKSTDADYTIRNMITDGPKSKVEVYENGTLLGILEL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   + NAL    +   IG+D   + E L        RF+ +G   +  ++  DYAH
Sbjct: 273 LVPGLHNISNALAVVAVGRHIGLDFDKIAEALSTFKGAQRRFQLIGIE-KEVQVVDDYAH 331

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             + +   LK  R   +GRII VF                 A   AD+ IV+D     E 
Sbjct: 332 HPSEIRATLKAARQAHAGRIIAVFQPHRYSRTQHLYEQFGEAFGDADVVIVSDIYSAGEK 391

Query: 425 PEK------IRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
           P +      I A +       +     IE I   +E ++   D+++  G G+
Sbjct: 392 PIEGVHAGLIVAAVQKNTGREVIYQPGIEQITDCLETIVKHGDLVLTMGAGN 443


>gi|15841649|ref|NP_336686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|13881901|gb|AAK46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 510

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 129/437 (29%), Gaps = 61/437 (13%)

Query: 3   LQDLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + +L      E++      I P     R++   V  DSR I  G +F+ + G + DGH  
Sbjct: 1   MIELTVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLRLPGARADGHDH 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
                         + A       A      P +VV       ++ A  L   +  +   
Sbjct: 61  AA-----------SAVAAGAAVVLAARPVGVPAIVVP-PVAAPNVLAGVLEHDNDGSGAA 108

Query: 117 ----------------------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
                                 I+ +TG+SGK+S    +  +    G      G  +   
Sbjct: 109 VLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNEL 168

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                    T    YL   ++             A  HG      +      G   N+G 
Sbjct: 169 GHPWTVLRATRRTDYLILEMA-------------ARHHGNIAALAEIAPPSIGVVLNVGT 215

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+    +++     K  L  + +P     ++ ADD     + K       RV S    G
Sbjct: 216 AHLGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTG 273

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                        + + T+       +    + G+ QV NAL AA + +  G     V  
Sbjct: 274 DVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAA 333

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVF 388
            L     V      V T   G  +  D Y    +S+   L+ +  I            V 
Sbjct: 334 ALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVL 393

Query: 389 GCGGDRDQGKRPIMGKI 405
           G   +  +       +I
Sbjct: 394 GEMAELGEDAIAEHDRI 410


>gi|299139506|ref|ZP_07032680.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
 gi|298598434|gb|EFI54598.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
          Length = 458

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 137/424 (32%), Gaps = 46/424 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A  +VV+S+   +D    + +    + V    + L+      YG    
Sbjct: 56  GHT----AANAAASDVVVTSSAVAKDNPEVLEARARKIPVIQRAEMLAELMRLKYG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ G  GK++  S V  +          + PT  +            S   L ++  
Sbjct: 108 --IAIAGMHGKTTTTSMVAAVLA-----GGALDPTVVVGG----RVDAMGSNARLGRSQY 156

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++    +  S               +  I    TNL R+H+D +          +  F 
Sbjct: 157 LVAEADESDRSFL------------KLSPILAVVTNLDREHMDTYADLADVERVFVE-FM 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P         D+   + ++ R      R+ + G         +V         T  V
Sbjct: 204 DRVPFYGAITACVDNEMLRAILPRVTR---RIYTYGESPDADFRLRVLRPAPDCHATFEV 260

Query: 296 EGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +      F   +PG   + NA  A  + + +GI    +   L     V  RF+  G  
Sbjct: 261 NTRGLVLGPFNLHVPGRHNLLNATAAVAIGVQLGIPPEKIAAGLASFRGVDRRFQTKGVQ 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  +  DY H    +   L+  R    GR++V+F                 A   AD 
Sbjct: 321 -NGVTVVDDYGHHPTEIRATLQAARECGYGRVLVLFQPHRYTRTRDLLEDFTTAFGDADS 379

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVA 465
             V D    SE P      E +  +I     G +   G+  EA+          D+++  
Sbjct: 380 LQVLDIYAASEQPIPGVSGESLAEKIRAASGGIVAYAGSMEEAVERLARDARPGDLVLTL 439

Query: 466 GKGH 469
           G G+
Sbjct: 440 GAGN 443


>gi|261414976|ref|YP_003248659.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371432|gb|ACX74177.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325875|gb|ADL25076.1| UDP-N-acetylmuramate--L-alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 460

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/407 (21%), Positives = 146/407 (35%), Gaps = 38/407 (9%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
           +   L  +S+ I  + P LV    R+   +  + + G+       L++ GT GK++  S 
Sbjct: 67  ADADLVVYSSAIPFDNPELVEARARRIPVIRRAEMLGELMRLKYTLSIAGTHGKTTTTSI 126

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  I + +GL    I     +       ++                        + A S 
Sbjct: 127 VGAIWEEAGLDPTII-VGGIVKGKCSGAKVGHGD-------------------YLIAESD 166

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             D+  L  +   +   TN+  DH+D ++   A  +A    F   +P     I+  DD  
Sbjct: 167 EFDRSFLSMM-PSSAIITNIDADHLDTYENIDAIKDA-FTQFANKIPFYGQVIVCLDDPN 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF-DFLFPLPGEF 310
            ++++         V++ G+  +  +  +         Q  I  + K    F   +PG  
Sbjct: 225 VQQILSHLKKP---VITYGFTRQAKYRVENLVFVKGYPQFEIVCDVKSLGQFKLQIPGRH 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NA  A  L +  GI   +  + +     V  RFEF+G    G  ++ DYAH      
Sbjct: 282 NVLNATAAVALAVEEGISIEVARKAVAAFEGVKRRFEFIGEK-NGVMVFDDYAHHPTEAT 340

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKI 428
             L   R      RIIV F          +      A    D+ +VTD  P  E P E +
Sbjct: 341 ATLLGFREAFPDKRIIVAFQPHLFTRTRDQHEAFGSAFSNCDVLLVTDIYPSREKPIEGV 400

Query: 429 RAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              ++       G       G+    I    E+L   DV+V+ G G+
Sbjct: 401 TGAMVANSAADRGHRDARFIGDVNNLIPVCKELLKPNDVIVLMGAGN 447


>gi|28209954|ref|NP_780898.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium tetani E88]
 gi|44888201|sp|Q899J1|MURC_CLOTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28202389|gb|AAO34835.1| UDP-N-acetylmuramate--alanine ligase [Clostridium tetani E88]
          Length = 456

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 90/433 (20%), Positives = 155/433 (35%), Gaps = 56/433 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--NTRKFL--SLFASRLY 110
           I + I  GAE  +   A ++++     ++A +  + P L     N  K +  + F   L 
Sbjct: 47  IDKLINLGAEIYIGHKAENIKNVDLIVYTAAVSEDNPELTKALTNNIKIMNRAEFLGYLM 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
             H  N +AV+GT GK++  S +  I   + L    +       +    N  T  S  +L
Sbjct: 107 DGHKYN-IAVSGTHGKTTTTSMMSHITVNANLDPTIL--VGGELNIINGNVRTGKSEYFL 163

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A  Y  S                           G   N+  DH+DY++      NA 
Sbjct: 164 TEACEYKESFLKFF-------------------PYIGVILNIDADHLDYYKDINHIKNAF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            + F  L+PK+   I  A+D    +++K   N  C +++ G     I  K +   +    
Sbjct: 205 SK-FANLIPKDGYLIACAEDENINDIIK---NIDCTIITYGLNKGDIQAKNITFDNKGCA 260

Query: 291 VTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               ++     F     +PG + V NAL +  +  A+ ID   +++ LE  H    RFE 
Sbjct: 261 SFDVIKNSSVLFSVKLNVPGSYNVLNALASICVSFALNIDKESIIKGLESFHGTHRRFEL 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G       +  DYAH    ++  L   +   S RI+ VF                 +  
Sbjct: 321 KGVR-NDVTVIEDYAHHPTEIKATLSAAKNYPSNRILCVFQPHTYTRTYSLFEDFTESFY 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG------------IPGFIEKGNRIEAIRTAIEML 456
             D  I+ D  P  E    I +  + G            +  F +  +         +  
Sbjct: 380 NTDTLILADIYPAREKDTGIVSSDMLGNKLRKKNINCINLHSFEDISD------YLKKET 433

Query: 457 NKQDVLVVAGKGH 469
              D++++ G G 
Sbjct: 434 KPGDLVLIMGAGD 446


>gi|239907962|ref|YP_002954703.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
 gi|259509768|sp|C4XK68|MURC_DESMR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239797828|dbj|BAH76817.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
          Length = 457

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 149/424 (35%), Gaps = 54/424 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTR--------KFLSLFASRLYGKH 113
           GA   +     +L D    ++S     + P +VV   R        + L+       G  
Sbjct: 50  GASIAIGHGRENLGDADVVVKSTAVTSDNPEVVVARERGIPVIPRAEMLAELMRLRTG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S +  I   +G     I     ++++    RL           
Sbjct: 108 ----IAVAGTHGKTTTTSLLATIFTEAGYDPTVI-IGGRLNAYGAGARLGQGE-----YL 157

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                +  IA   TN+  DH+D++   +A  +A    
Sbjct: 158 IAEADESDGSFLC---------------LSPIASVVTNVDADHLDHYDGIEAIDDA-FVD 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   +P     ++  DD     ++ R +     +L+ G+  K     ++          +
Sbjct: 202 FLNNIPFYGVNVVCLDDPGVARILPRVNRP---ILTYGFSDKARLRGRIIDSGAMSCFEV 258

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           S++GK   +     PG   V NAL A G+ + +GI    + E L K   V  RFE  G  
Sbjct: 259 SLDGKRLGEMRLNHPGRHNVLNALGAIGVSLEVGIPLGTIAEALAKFAGVGRRFERKGEK 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLAD 411
             G  +  DY H    ++  L   R +   R +VV F                   + AD
Sbjct: 319 -DGVVVVDDYGHHPAEIKATLATARAVYPERRLVVAFQPHRFSRTKALFGDFCTCFEAAD 377

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV 464
             ++T+  P SE P      E +   I       +       A+  A+  +L   D+ V 
Sbjct: 378 ELLLTEIYPASEAPIPGVSGESLGQGIRQVTKTKVAYYPDFAAMEAALPGILRPGDLFVT 437

Query: 465 AGKG 468
            G G
Sbjct: 438 LGAG 441


>gi|15676328|ref|NP_273464.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis MC58]
 gi|7225638|gb|AAF40854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Neisseria
           meningitidis MC58]
          Length = 455

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 146/417 (35%), Gaps = 40/417 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGIALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           G  +  D Y    +S++  +  +  + + RI V+   G   + G+       A   A
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGELGEDEAAAMHAEVGA 384


>gi|294670604|ref|ZP_06735483.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307729|gb|EFE48972.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 455

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 146/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P     + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLNLPTSSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCAALDGALKVDDTLAALQTLAKAWRDNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L  ++  A+I  +D ++      +     +  + G     +H + +       +  + 
Sbjct: 212 QGL-GEDGLALIPCEDEHAAVFQTSSQGHQQQ--TFGVDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  A  L +A G+    V E L+    + GR   V    +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAGALALAAGLSLDDVAEGLQGFSNIKGRLN-VKAGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|296125459|ref|YP_003632711.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
 gi|296017275|gb|ADG70512.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
          Length = 462

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 158/429 (36%), Gaps = 53/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I     A+V SSA S  +    + +    + V +  + L+      YG    
Sbjct: 57  GHH--ASNIEDDITAVVTSSAISPAN-EEIVAAKAKKITVISRGEMLAELMRLRYG---- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A++G+ GK++  S + QI   +GL+   I     I     + +             +
Sbjct: 110 --IAISGSHGKTTTTSLISQIMMHAGLNPVCI-----IGGNHFNLKSN-----------A 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +     ++  EA        RL     +    TN+  DH+DY+   +A   A +  F 
Sbjct: 152 VCNDLSSEYMVCEADESDGSFLRLS---PVINVVTNIDNDHLDYYGNVEALRVAFLE-FI 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    + +  ++   +++ K A N             F   K    +       I+ 
Sbjct: 208 NKVPFYGCSFLCFENDVVRDLSKSA-NKKYYSYGFDKSYDFHVDKDSIRVEAPITYFIAY 266

Query: 296 EGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             K+   +F  PL GE  + N+L + G+   +GID   + E L+    V  R   +    
Sbjct: 267 HNKECLGEFSVPLIGEHNILNSLASIGVAYHLGIDVPNIKEGLKTFEGVGRRLNKL--YD 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +   ++ DYAH    ++  L ++R    S RII VF               + A + AD 
Sbjct: 325 KEITLFDDYAHHPTEIKATLSSVRNAYKSRRIIAVFQPHRYSRTELLLNDFEYAFNDADE 384

Query: 413 AIVTDDNPRSEDP-----EKIRAEIIH-------GIPGFIEKGNRIEAIRTAIEMLNKQD 460
            I+TD     E P      +I  +I+         I    E    +E+I+         D
Sbjct: 385 VIITDIYAAGEAPIAGVNGEIICDIVKKQNKNVRYIKNIDEVLPVLESIK------KDGD 438

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 439 IIITLGAGN 447


>gi|121595965|ref|YP_987861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
 gi|120608045|gb|ABM43785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
          Length = 482

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 140/380 (36%), Gaps = 25/380 (6%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
            +D+R + AG +FVA+ G + D H F+ QA          + A +    +    +  P +
Sbjct: 41  HTDTRTLAAGDLFVALKGERFDAHQFLSQAR--------RAGAAAAIAHAGLADAGLPGI 92

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V +T   L   A+    +    ++AVTG++GK++V   +  + +            +T 
Sbjct: 93  EVPDTLAALGALAAGWRAQRDLPLIAVTGSNGKTTVTQMIAAVLRA----WKGDAALATQ 148

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
            +F  D  +            + +   G+ H    A+         D  +       N  
Sbjct: 149 GNFNNDVGVPLTLLRLRPGHEAAVVELGMNHPGEIAN-------LADIARPTVALVNNAQ 201

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           R+H+++  T +A       +   L P +  A+  A DA++    + A    C  L+ G  
Sbjct: 202 REHLEFMHTVEAVARENGSVLSAL-PADGTAVFPAADAFTPLWRELAGTRHC--LTFGET 258

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +            QV I      FD    + G   V NAL A    +A G+  A + 
Sbjct: 259 AGEVRCAAAQWGGGAWQVRIDTPNGAFDTRLAIAGRHNVTNALAATACALAAGVPLASIA 318

Query: 334 EHLEKLHVVPGRFEFVGTN--SRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           + L     V GR   +      R   +  D Y    +S+   ++ +  +   R++V+   
Sbjct: 319 QGLAAFAPVNGRSRALAVRCGGRSITVVDDSYNANPDSVHAAIEVLAALPGPRLLVLGDM 378

Query: 391 GGDRDQGKRPIMGKIALDLA 410
           G   DQG +      A   A
Sbjct: 379 GEVGDQGPQFHAEAGAHARA 398


>gi|304384057|ref|ZP_07366512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
 gi|304334845|gb|EFM01120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
          Length = 433

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 131/388 (33%), Gaps = 29/388 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R   A  IF A+ G+  +G+ F  +A+  G    VV               +   
Sbjct: 16  ITTDTRDCPADSIFFALHGDTFNGNAFAAKALEAGCAYAVVDEP------QYANADDDRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V ++ K L   A     + P  I+ +TGT+GK++    +  +        +  G    
Sbjct: 70  LMVPDSLKALQDLARHHRRQMPARIIGITGTNGKTTTKELIAAVLAEKYNVLYTQG---- 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P  L   L       V  + + A+  G         +   G  TN+
Sbjct: 126 ------NFNNHIGVPKTL---LRLKPEHEVGVIEMGANHPGEIACLAGIAEPDCGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++ L  K +S   I  D+ Y  ++     + G  ++  G
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDFLRTKLKSTVFIDNDNPYLCDI-----SQGLNLVRYG 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +     L +  A  +   +            D    L G + + N L AA + +   I 
Sbjct: 232 CRPAENLLIEGQAASSTPLLQFRWRHSTDAWHDVGTQLIGSYNLTNLLAAACVGLYFSIA 291

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   L        R +   T +    I   Y     S+   L N   +   + + + 
Sbjct: 292 PEQIDHALSHYTPGNNRSQLAVT-AHNRLIIDAYNANPTSMNAALTNFEEMDVPKKMAIL 350

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVT 416
           G   +          K+   L    I T
Sbjct: 351 GDMKELGTVSHAEHQKLVDGLRHSTIHT 378


>gi|297545642|ref|YP_003677944.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843417|gb|ADH61933.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 876

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 148/389 (38%), Gaps = 29/389 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK++V      I +  G   + +G T T   +  D  +          A +
Sbjct: 479 PIISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSART 535

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L+ + +    +E +  G+ +  L       G  TN+  DH+  D  +T +     K  L
Sbjct: 536 CLADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIKTLEDLAFVKS-L 594

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVC 283
             E + ++  +++ ADD  +  + +RA                       G  +++K   
Sbjct: 595 VVEAVKEDGYSVLNADDPMTPYLAQRAKGKVIYFSMYDNNLTVKKHVEKGGIAVYVKDGV 654

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
            +    Q+   V+ ++          + V NAL A      + +   ++ + ++  +   
Sbjct: 655 IVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDT 714

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
                 F   N    R+ VDY H    ++ +++  + + + R+I V G  GDR       
Sbjct: 715 THNPGRFNLFNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILK 774

Query: 402 MGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAI 453
           +G+I  +  D   + +D + R   P ++   +  G                  EA++ A+
Sbjct: 775 VGEICGEGFDFIYIKEDVDLRGRKPGEVARILEEGAIKGGMDRKKIKTILKETEALKAAM 834

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
                 D++VV    +E    + +  ++ 
Sbjct: 835 YHAEAGDLIVVF---YEKYQPIIDVIEEF 860


>gi|283850513|ref|ZP_06367801.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
 gi|283574084|gb|EFC22056.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
          Length = 470

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 155/411 (37%), Gaps = 44/411 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A +  +    +     I V+    + L+       G      +AV GT GK+
Sbjct: 78  ADVVVKSTAVTNDNPEVVVARERGIPVIPRA-EMLAELMRLRTG------IAVAGTHGKT 130

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   +GL    I     ++++    RL           ++       + +  
Sbjct: 131 TTTSLLATIFTEAGLDPTVI-IGGRLNAYGAGARLGQGE-----YLIAEADESDGSFLC- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +  IA   TN+  DH+D++   +A  +A +  F   +P     ++ 
Sbjct: 184 --------------LAPIASVVTNVDADHLDHYAGIEAIDDAFVE-FLNGIPFYGVNVVC 228

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            DD     ++ R +      ++ G+  K     ++     K +  +S++G+D  +     
Sbjct: 229 LDDPGVARLLPRINRPF---VTYGFGEKARLRGRILETGAKSRFLVSLDGEDLGEMRLNH 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A G+ +  GI  A++ E L K   V  RFE  G  + G  +  DY H  
Sbjct: 286 PGRHNVQNALGAIGVSLETGIAPAVIAEALAKFGGVGRRFEIKGERA-GVVVVDDYGHHP 344

Query: 367 NSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED- 424
             +   L   R +   R +VV F                   + AD  ++T+  P SE  
Sbjct: 345 AEIRATLATARAVYPDRRLVVAFQPHRFSRTKALFGDFCTCFEAADTLLLTEIYPASEAP 404

Query: 425 -PEKIRAEIIHGIPGFIEKGNRI-----EAIRTAI-EMLNKQDVLVVAGKG 468
            P      +  GI   + K +        A+  A+  +L   D+L+  G G
Sbjct: 405 IPGVSGESLARGIRQ-VSKTDVAYYPDFAAVEAALPGVLRPGDLLLTLGAG 454


>gi|325280813|ref|YP_004253355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312622|gb|ADY33175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 428

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 135/378 (35%), Gaps = 39/378 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR I  G IF+A+ G   DG+ +              ++A   Q  +  I  N   
Sbjct: 16  ITTDSRQIIRGDIFIALKGENFDGNRY--------------AAAALEQGAALAIIDNADY 61

Query: 93  L-----VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           L     +V ++  FL   A     +    IL +TGT+GK++       +  +   +    
Sbjct: 62  LSPGCELVADSLLFLQQLAHYHRQQLHIPILGITGTNGKTTTKELCHAVLSKKFKTFATQ 121

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G          +       P+ L   +   +  G+  V + A+  G  +   +      G
Sbjct: 122 G----------NFNNHIGVPLTLLS-MDETTEFGI--VEMGANHPGEIKTLCEIADPDFG 168

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H++   + +     K  L++ LLPK  P  +   D    ++     +   + 
Sbjct: 169 IITNIGHAHLEGFGSYENIIATKKALYDYLLPKNGPVFVNTGDPLLMQL-----SRDHKR 223

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            + G +G  +   ++         ++     D      L G +   NA+ A+ + +  GI
Sbjct: 224 YTYGQEGDLLK-GEIKQTVPYLVYSLKTRKGDLYVKTHLVGGYNFDNAMAASAIGMHFGI 282

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D   +   +E       R + +  + R   I   Y    +S+   + N   +     +V+
Sbjct: 283 DPLDIQTAIENYRPSNLRSQLI-RSGRNTIILDAYNANPSSMRASVGNFCEMPGEHKVVI 341

Query: 388 FGCGGDRDQGKRPIMGKI 405
            G   +          +I
Sbjct: 342 LGEMLELGTENAAAHEEI 359


>gi|261378426|ref|ZP_05982999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145204|gb|EEZ71622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
          Length = 452

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 145/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALNLPMPSENKSVSRIVTDSRDIRVGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  I +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAILRR---RFGDDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA     + +         + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGIALIPQEDANMA--VFKMATLNLNTRTFGIDSGDVHAENIMLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLN-VKAGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|307294495|ref|ZP_07574337.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
 gi|306878969|gb|EFN10187.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
          Length = 473

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 151/421 (35%), Gaps = 52/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A    +    +     + V+        L          ++ +AV GT GK+
Sbjct: 68  AAVVVTSTAIKKGNPEVDLALERRVPVIRRAEMLAELMRL-------KSTVAVAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G+    I     I+S+  + RL     +                  V
Sbjct: 121 TTTSMVAALLDAGGVDPTVING-GIINSYGSNARLGNSEWM-----------------VV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RLDG        TN+  +H+D++ +     +A +  F E +P    A++ 
Sbjct: 163 EADESDGSFLRLDGT---LAVVTNIDPEHLDHYGSFDKVKDAFVE-FVENVPFYGAAMLC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            D    + ++ R  +          Q   I  + V  I    +  + +  +D        
Sbjct: 219 LDHPEVQAILPRVQDRRIVTYGFSAQAD-IRGENVQPIPGGNRFDVQIRERDGSLRRIEG 277

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RI 358
              P+PG   V NA+ A G+ + +GID A V     K   V  RF  VG  + GG    +
Sbjct: 278 IEMPMPGRHNVLNAMAAIGVALQMGIDDATVQTGFAKFGGVKRRFTKVGEIAVGGGTATV 337

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    ++ +L   R    GR+I V                + A + ADI      
Sbjct: 338 IDDYGHHPVEIKAVLAAAREGAKGRVIAVVQPHRFTRLRDLMDEFQQAFNDADIVYAAPV 397

Query: 419 NPRSEDP--EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEML-------NKQDVLVVAGKG 468
            P  E P      AE++ G+     +G+R  A +  A ++           D+++  G G
Sbjct: 398 YPAGEQPIEGVDSAELVAGLK---RRGHRNAATVEGADDLARVIAADVQADDMIICLGAG 454

Query: 469 H 469
            
Sbjct: 455 D 455


>gi|295394740|ref|ZP_06804955.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972336|gb|EFG48196.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 452

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/434 (22%), Positives = 162/434 (37%), Gaps = 51/434 (11%)

Query: 53  KEDG-HLFIP---QAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFA 106
           +  G H+FI      +  GA+ +VVSSA    +           P++   +        A
Sbjct: 43  RAHGAHVFIGHDGSHVE-GADTVVVSSAIRHTNPEIVRAEELGIPVIHRSDA------LA 95

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTP 165
           + + GK     +A+ GT GK++  S      Q +G   SF IG   + +           
Sbjct: 96  TLMEGK---RTIAIAGTHGKTTTTSMTTVALQAAGKDPSFAIGGQLSKTGTN-------- 144

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                    ++  S  V     + S     ++R        G  TN   DH+D++ + + 
Sbjct: 145 ---------AHAGSGDVFIAEADESDGSFLKYR-----PEVGVITNAEADHLDHYGSWER 190

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A +     +       I+ ADD  +  + + A   G  V+  G              
Sbjct: 191 VREAFVEFGSHVGNMGGTLIVCADDKGAASIGREAREQGTNVILYGESDIADARVNASTH 250

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                V+I+ EG+++ F   LPG +   NA  A     A+G D   +++ LE       R
Sbjct: 251 GQGVSVSIAFEGQEYAFDIALPGTYNALNATAAFLSARAVGGDPQGIIQGLESFTGTRRR 310

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMG 403
           FE  G   +G R+Y DYAH    +  +L   + +   S ++ V+F               
Sbjct: 311 FELRGIE-KGVRVYDDYAHHPTEVTALLTAAKKVVDPSNKVHVIFQPHLFTRTKNFYREF 369

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             AL LAD  IV D  P  EDP      E I  E+   +       +   A+ T +E + 
Sbjct: 370 ARALSLADDVIVLDVFPAREDPIPGVTGELIAREVTSDVTYVPAFSD---AVPTVVERVK 426

Query: 458 KQDVLVVAGKGHET 471
             D+++  G G  T
Sbjct: 427 PGDIVLTVGAGDVT 440


>gi|257068260|ref|YP_003154515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
 gi|256559078|gb|ACU84925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
          Length = 495

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 155/453 (34%), Gaps = 48/453 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR +  G +F A +G   DGH F+  A   GA   +V+      D +A    + P + 
Sbjct: 33  IDSREVGPGDLFAAFLGEHVDGHDFLDAARTAGAALSLVT------DAAAAAEHSLPAVR 86

Query: 95  VDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           VD+ R        +  A          +LAVTG++GK+     +  I + +G +   +G 
Sbjct: 87  VDDVRDALAALARAQLARARQENPQLVVLAVTGSAGKTGTKDLLGTILRSAGPTVAPVGS 146

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            T    +L              + + A   G      +  +      
Sbjct: 147 FNNELGLPLTVLQVTGETRFL-------------VLEMGARGIGHIAELTEIARPDVSLV 193

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+    +  A   AK  L + L P    AI+ A+D   + V   A  +   V++
Sbjct: 194 LNVGSAHLGEFGSVDAIARAKGELVDALAP-GGRAILNAED---RLVAAMAERSAAPVVT 249

Query: 270 VGYQGKFIHLKKVCAIHNKQ-QVTISVEG------------KDFDFLFPLPGEFQVYNAL 316
            G+    +   ++      +   T+ V                F     L GE Q  N L
Sbjct: 250 WGFTTGDVRGAELTLDEQARVAFTLEVPAGLTTLHGDAVAPGSFPVRPDLLGEHQAANVL 309

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            A    +  G+DSA     L+   +  G+   V   + G  I  D Y    +SL   LK 
Sbjct: 310 AALTAALMAGVDSASATAALDGATLASGQRMQV-LRAGGALIIDDAYNANPDSLRQALKT 368

Query: 376 IRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR--AEI 432
           +  +      I V G   +       +  +I   LA    +       E    I   A +
Sbjct: 369 LAHLGRRHRTIAVLGEMLELGPDTVRLHDEI-GRLAVRLNIGQLYVVGEGAAPIHHGASL 427

Query: 433 IHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
                G  E  +   EAI     ++   D +++
Sbjct: 428 EGSFGGESEYLDTVEEAIAVLERIVQPGDAVLL 460


>gi|83589695|ref|YP_429704.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
 gi|109892711|sp|Q2RK78|MURC_MOOTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83572609|gb|ABC19161.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
          Length = 468

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 138/422 (32%), Gaps = 42/422 (9%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H      +A G + +V+SSA    +          + VV        LF +R        
Sbjct: 57  HQHDAANLAPGVQEVVISSAVPSSNPEVVAARQRSLPVVKRGELLARLFNARRG------ 110

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV G  GK++ ++ V  + +  GL    +     I  + ++                 
Sbjct: 111 -IAVAGAHGKTTTSALVALVMKEGGLEPAAV-----IGGYVREFASNAYPGRGDFLVAEA 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S G                    +K      TN+  DH++++ +      A  + F +
Sbjct: 165 DESDGSFLW----------------LKPEIALITNIEADHLEHYGSLDRIVAA-FKDFID 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
            +     AI+ A+D     V      +  +V++ G  G+       V       +  I  
Sbjct: 208 QIRPGGKAILCAEDP---RVAGLVACSPRQVITYGLNGRPDYRATGVQMAGMGGRAAIYY 264

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             +        +PG   + NAL A      +GI  A++   L +   V  RFE +  +  
Sbjct: 265 REQYLGQLTMAVPGRHNILNALGAIAAGHQLGIPFAVMARALGQFRGVGRRFEILWDDGT 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             R+  DYAH    +   L     + + R++ VF                 A   AD+ I
Sbjct: 325 -TRVVDDYAHHPTEIRATLAAASQVGAKRVVAVFQPHRYTRTHHLYREFGQAFRQADVVI 383

Query: 415 VTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           V D  P  E P      + I  EI   G           E +    +     D+++  G 
Sbjct: 384 VNDIYPAGEAPLPGVNSQLITGEIKGSGHQQVYYLPTLEETLAFLKKSCRPGDLVLTLGA 443

Query: 468 GH 469
           G 
Sbjct: 444 GD 445


>gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 259

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 24/247 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +S+D+R ++AG +F+A+ G + DGH F+ QA+AQGA  +++S           I S 
Sbjct: 26  FTGISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQGAAGVLISR------RDIVIPSG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +++ D+TRK L   A     +    ++AVTG++GK++       +         +   
Sbjct: 80  IAVVLTDDTRKALQNLACFHRLRFDIPVIAVTGSNGKTTTKDMTAAVLAS------RFKV 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T +++                 L+  +   V  V +   S G  +   +      G  
Sbjct: 134 LKTEANY-------NNEIGLPLTLLNLTADHQVAVVEMGMRSKGEIRELAEVALPTVGVV 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  HI+   + +   +AK  L E +  +E   I+ AD+ Y   +  +   A   V+ 
Sbjct: 187 TNVGETHIELLGSLENIASAKAELVENI--QEGLVILNADNPYVYAMRSKTKAA---VIF 241

Query: 270 VGYQGKF 276
            G   + 
Sbjct: 242 FGLNSQA 248


>gi|257056721|ref|YP_003134553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586593|gb|ACU97726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 487

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 101/508 (19%), Positives = 171/508 (33%), Gaps = 82/508 (16%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF--- 59
           + +L   +  E ++   +      ER    V  DSR +  G +FVA+ G + DGH F   
Sbjct: 1   MIELTLAEIAEAVSG-RLHRADGGERVTGSVEFDSRKVTDGGLFVALPGERADGHDFAAS 59

Query: 60  --------------IPQAIAQGAEAIVV---------SSAYSLQDFSATIRSNTPILVVD 96
                         +       A A++V           + +L   +    +     +  
Sbjct: 60  AVAAGAAGVLAAREVD------APAVIVPPLPPGQAHERSVALAGDTDGSGAAVLAALAA 113

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
             R  ++  +          ++ VTG+SGK+S    + Q+ +  G +    G  +     
Sbjct: 114 LARHVVTRLSETGL-----TVVGVTGSSGKTSTKDLIAQLLEPLGPTVAPPGSFNNELGH 168

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                       +L   LS             A   G             G   N+G  H
Sbjct: 169 PWTALRADRKTRHLVLELS-------------ARGPGHIAELAAVAPPRIGVVLNVGSAH 215

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +    +Q+     K  L E L P E  A++  DD +   V + A     RV+ VG   K 
Sbjct: 216 VGEFGSQEGIARTKGELVEAL-PAEGVAVLNVDDPF---VAEMAQRTSARVVGVGESPKA 271

Query: 277 IHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
               +      H +    +   G+  +    L GE  V NAL AA + + +G+  + V  
Sbjct: 272 DVRAENVRLDEHARASFDLVAGGERAEVRLQLVGEHHVGNALAAAAVALELGMPLSEVAA 331

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGG 392
            L        R   V T S G  +  D Y     S+   LK + ++T S R   V G   
Sbjct: 332 GLSAATRRSERRMEVTTRSDGVTVLNDSYNANPESMRAALKTLASMTSSRRSWAVLGVMS 391

Query: 393 DRDQ---GKRPIMGKIA--LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFI 440
           +           +G++A  L++  + +V +            A +  G           +
Sbjct: 392 ELGADSVSAHDEIGRLAVRLNINRLVVVGEQ----------AAAMHRGASHEGSWGEESV 441

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV-AGK 467
              +   A+    E L   DV++V A K
Sbjct: 442 LVPDTDAAVALLREQLRPNDVVLVKASK 469


>gi|325473281|gb|EGC76476.1| hypothetical protein HMPREF9353_02271 [Treponema denticola F0402]
          Length = 303

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 109/280 (38%), Gaps = 29/280 (10%)

Query: 9   KDFPELINQLSIFPMQWRERK-INEVSSDSRHI-----------QAGWIFVAIVGNKEDG 56
           K   E I  + +      ++  IN V  DSR +           + G  F A+ G   DG
Sbjct: 26  KSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDG 85

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             FI  AI  GA  I         D +         + V++ RK +S  ++ LY +    
Sbjct: 86  KKFINSAIENGAVCIFYE-----GDLNNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRT 140

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLT-TPSPIYLA 171
           +  + VTGT GKSS  SF+ Q+    G  +        S   +   +     TP    + 
Sbjct: 141 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNIVQ 200

Query: 172 KALSYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             L+ +   G  +  VEASSHGL     RL+ +   AG F N+ ++H+++H T + Y   
Sbjct: 201 LRLAQMRDSGCGYAVVEASSHGLSPRTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 260

Query: 230 KMRLFEELLPKESPAI-----IYADDAYSKEVMKRAHNAG 264
           K  LF  L             +  +D  +   M+      
Sbjct: 261 KANLFRALDKNPGKGFPIFGIVNYEDPSAPYFMEATQKKC 300


>gi|20808924|ref|NP_624095.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|23821878|sp|Q8R749|MURC_THETN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|20517585|gb|AAM25699.1| UDP-N-acetylmuramate-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 460

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 137/425 (32%), Gaps = 49/425 (11%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++        PI+   +    L L   +         +AV G+ 
Sbjct: 67  GADLVVYTAAIHDDNVEYQKAKELGIPII---DRATLLGLIMKKYKFG-----VAVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           GK++  S +  I  R+G     +  G    I    +  +             S+L     
Sbjct: 119 GKTTTTSLISVILDRAGYDPTVLVGGEIDAIGGNVRVGKSEYFVTEACEYTDSFLKFY-- 176

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                                       N+  DH+DY +       +  R F  L+P + 
Sbjct: 177 ---------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFASLVPSDG 214

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
             +   DDA +  V+K           +  +  +                +   GK    
Sbjct: 215 FVVACKDDANTMHVIKGLEKNIV-TYGINEKSDWQAKDITYDEKGCASFNVYYRGKFIGH 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  +YNAL +  +   +G+D+    E++++      RFE  G    G  +  D
Sbjct: 274 FKLSIPGKHNIYNALASLAVTYLLGVDTEKAKEYIKEFKGTHRRFEVKGV-VEGVTVVDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    +   L+  +     RII +F                 + D AD  I+TD    
Sbjct: 333 YAHHPAEIHATLEAAKNYPHKRIIAIFQPHTYSRTKALLSDFAESFDAADKIIITDIYAA 392

Query: 422 SEDPEKI------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            E    I         I       +   +    +    E   + D+++  G G+    I 
Sbjct: 393 REKDTGIVSSKDLVDLIFKRGKDVLYIKDFDSIVEYLKENTEEGDLVLTIGAGN----IY 448

Query: 476 TNGEK 480
             GEK
Sbjct: 449 EVGEK 453


>gi|78356090|ref|YP_387539.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|109892703|sp|Q313Q2|MURC_DESDG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78218495|gb|ABB37844.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 454

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/411 (20%), Positives = 150/411 (36%), Gaps = 44/411 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A S+ +          I ++    + L+       G      +A+ GT GK+
Sbjct: 65  AQVLVKSTAVSMDNPEVQAAQEKGIPIIPRA-EMLAELMRLRKG------IAIAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    I   +G     I     ++++  + RL           L+       + +  
Sbjct: 118 TTTSLTAAIFDEAGTDPTVI-IGGRLNAYGSNARLGEGE-----FLLAEADESDGSFLC- 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +  +    TN+  DH+D++  QQA   A    F   +P     ++ 
Sbjct: 171 --------------LSPVVNVVTNVDLDHVDFYHDQQAIDTA-FINFMNKVPFYGMNVVC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            DDA  + ++ +       VL+ G+        +        +  + + G+D  +     
Sbjct: 216 GDDAGVRRLLPQIKRP---VLTYGFGPDNQLRAETVTCGETSRFRVLLHGEDLGEVNLVQ 272

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A G+ +  GI + + L  L     V  RFE  G    G  +  DY H  
Sbjct: 273 PGRHNVLNALAAIGVGLETGIAADVCLRGLANFRGVGRRFERKGERG-GVLVVDDYGHHP 331

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSED 424
             +   L   RT   GR +VV      R    + + G    A D  D  ++T+  P SE 
Sbjct: 332 AEIAATLATARTCYPGRRLVV-AFQPHRFSRTKALFGDFCKAFDNVDKLLLTEIYPASEA 390

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           P      + +   I       ++     +A+R A+ E L   D+ +  G G
Sbjct: 391 PIPGVSGQSLAQGIRQVSNTDVDYFQDFDAMRAALPETLRPGDLFLTLGAG 441


>gi|312140146|ref|YP_004007482.1| UDP-N-acetylmuramoyl-tripeptide-d-alanyl-d-alanin e ligase murf
           [Rhodococcus equi 103S]
 gi|311889485|emb|CBH48802.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase MurF
           [Rhodococcus equi 103S]
          Length = 506

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 151/500 (30%), Gaps = 66/500 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     ++   +        +    ++  V  DSR I  G +F+A+ G + DGH     
Sbjct: 1   MIPMTLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITPGGLFLALPGARVDGHDHAAG 60

Query: 63  AIAQ-----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFA 106
           A+A            G  AIVV    +  + +  +  +       +         L   A
Sbjct: 61  AVAAGAVAVLAARPVGVPAIVVEPLGTSGNGALALEHDR------DGSGAAVLAALGKLA 114

Query: 107 SRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                +        ++ VTG+SGK+S    +  +    G      G  +           
Sbjct: 115 RASVDRLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALR 174

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 +L              + + A   G      +      G   N+G  H+    +
Sbjct: 175 ADADTRFL-------------VLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGS 221

Query: 223 QQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHL 279
           ++A    K  L   L        A++ ADD     V   A     RV+ VG  G   +  
Sbjct: 222 REAIAETKGELPASLPSAADGGVAVLNADDPL---VAAMADRTEARVVMVGLSGNADVRA 278

Query: 280 KKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             V      +   T++           + GE  V NAL AA + +  G     +   L  
Sbjct: 279 TDVRLDDQARASFTLTCAAGAVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGG 338

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCG 391
              V  R   V   S G  +  D Y    +S+   +K + ++       + R   V G  
Sbjct: 339 AAPVSARRMEVRDRSDGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEM 398

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGN 444
            +           I    A    VT        P +    +  G           I   +
Sbjct: 399 AELGPESVVEHDAI-GRFAVRLDVTKLILVG--PGRPVRAMYQGAVMEGSWGDEAIHVPD 455

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
              AI    + L   D+++V
Sbjct: 456 GASAIALLEQELRAGDLVLV 475


>gi|291546674|emb|CBL19782.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. SR1/5]
          Length = 459

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 147/429 (34%), Gaps = 56/429 (13%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
            +GA       A +++D      ++A I  + P       +    L  + L G+   N  
Sbjct: 52  ERGAVIYYGQRASNIKDDVDVVVYTAAIHPDNPEFACAKEKGLPMLTRAELLGQIMRNYD 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A++GT GK++  S V  I    G     I     + +   + R+      ++ +A  
Sbjct: 112 TPIAISGTHGKTTTTSMVSHILLE-GDCDPTISVGGILPAIHGNIRVGNSET-FITEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S                               N+  DH+D+ +      ++  R F 
Sbjct: 170 YTNSFLSFF-------------------PKISVILNMDADHLDFFKDIDDIRHS-FRKFA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTI 293
           ELLP +   II AD    + + +      C VL+ G  +   +         +     ++
Sbjct: 210 ELLPADGTLIINADTPEYETITRELP---CNVLTYGLEHDADYTAADITWDKYGHPSFSV 266

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              GK    +   +PG   V NAL A  +   + + + ++++ L        RF++ G  
Sbjct: 267 LFRGKKIGSYYLRVPGIHNVSNALAAIAVGRLLDLPNDVIVKGLGSFTGTDRRFQYKGEI 326

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I  DYAH    +E  L   +     ++  VF                 AL LAD 
Sbjct: 327 G-GITIIDDYAHHPTEIEATLHAAKNYPHQKVWCVFQPHTYTRTKALLPEFAKALTLADH 385

Query: 413 AIVTDDNPRSE---------DPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            ++ D     E         D +K   E+       P F E  +        ++     D
Sbjct: 386 VVLADIYAARETDNLGISSQDLQKQIQELGTPCEYFPTFDEIES------FLLKSCAHGD 439

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 440 LLITMGAGD 448


>gi|58700141|ref|ZP_00374655.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533343|gb|EAL57828.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 213

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 12/219 (5%)

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           G  I L +  +  N Q +T+ ++ + ++  FP+ G+FQ YN L A G+    G++   + 
Sbjct: 1   GSDITLLEQTSTPNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGIS---GLNYREIC 57

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             +EKL   PGR E V         +VDYAHT ++L+  L +++   + +II+VFGCGG+
Sbjct: 58  --VEKLVSPPGRMEKVK-----PFAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGN 110

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           RDQ KR  MGKIA   AD  I+TDDN R EDP KIR +I+   P  +E G R EAI   +
Sbjct: 111 RDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGV 170

Query: 454 EML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           ++  N+  +L+VAGKG+E   I+ N   +   D ++I+ 
Sbjct: 171 DIAYNEGMILLVAGKGNEKFQIIGNQTFE-FSDVEVIKN 208


>gi|294012777|ref|YP_003546237.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
 gi|292676107|dbj|BAI97625.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
          Length = 473

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 151/421 (35%), Gaps = 52/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A    +    +     + V+        L          ++ +AV GT GK+
Sbjct: 68  AAVVVTSTAIKKGNPEVDLALERRVPVIRRAEMLAELMRL-------KSTVAVAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G+    I     I+S+  + RL     +                  V
Sbjct: 121 TTTSMVAALLDAGGVDPTVING-GIINSYGSNARLGNSEWM-----------------VV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RLDG        TN+  +H+D++ +     +A +  F E +P    A++ 
Sbjct: 163 EADESDGSFLRLDGT---LAVVTNIDPEHLDHYGSFDKVKDAFVE-FVENVPFYGAAMLC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            D    + ++ R  +          Q   I  + V  I    +  + +  +D        
Sbjct: 219 LDHPEVQAILPRVQDRRIVTYGFSAQAD-IRGENVQPIPGGNRFDVQIRERDGSLRRIEG 277

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RI 358
              P+PG   V NA+ A G+ + +GID A +     K   V  RF  VG  + GG    +
Sbjct: 278 IEMPMPGRHNVLNAMAAIGVALQMGIDDATIQTGFAKFGGVKRRFTKVGEIAVGGGSATV 337

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    ++ +L   R    GR+I V                + A + ADI      
Sbjct: 338 IDDYGHHPVEIKAVLAAAREGAKGRVIAVVQPHRFTRLRDLMDEFQQAFNDADIVYAAPV 397

Query: 419 NPRSEDP--EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEML-------NKQDVLVVAGKG 468
            P  E P      AE++ G+     +G+R  A +  A ++           D+++  G G
Sbjct: 398 YPAGEQPIEGVDSAELVAGLK---RRGHRNAATVEGADDLARLIAADVQADDMIICLGAG 454

Query: 469 H 469
            
Sbjct: 455 D 455


>gi|167041008|ref|YP_001663993.1| cyanophycin synthetase [Thermoanaerobacter sp. X514]
 gi|300913781|ref|ZP_07131098.1| cyanophycin synthetase [Thermoanaerobacter sp. X561]
 gi|307725533|ref|YP_003905284.1| cyanophycin synthetase [Thermoanaerobacter sp. X513]
 gi|166855248|gb|ABY93657.1| cyanophycin synthetase [Thermoanaerobacter sp. X514]
 gi|300890466|gb|EFK85611.1| cyanophycin synthetase [Thermoanaerobacter sp. X561]
 gi|307582594|gb|ADN55993.1| cyanophycin synthetase [Thermoanaerobacter sp. X513]
          Length = 876

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 158/441 (35%), Gaps = 37/441 (8%)

Query: 65  AQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   I  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 ENGAIIEINASPGIRMHHYPSKGKPR-------NVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G   + +G T T   +  D  +          A + L+ + + 
Sbjct: 487 NGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTCLADKNID 543

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241
              +E +  G+ +  L       G  TN+  DH+  D  +T +     K  L  E + ++
Sbjct: 544 AAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA-LVVEAVKED 602

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQV 291
             +++ ADD  +  + +RA                       G  +++K    +    Q+
Sbjct: 603 GYSVLNADDPMTPYLAQRAKGKIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIVIANGQI 662

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRFEFV 349
              V+ ++          + V NAL A      + +   ++ + ++  +         F 
Sbjct: 663 IPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHNPGRFN 722

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I    
Sbjct: 723 LFNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGQG 782

Query: 410 ADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDV 461
            D   + +D + R   P ++   +  G                  EA+R A+      D+
Sbjct: 783 FDFIYIKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEALRAAMYNAEAGDL 842

Query: 462 LVVAGKGHETVHIVTNGEKKM 482
           +VV    +E    +    ++ 
Sbjct: 843 IVVF---YEKYQPIIEVIEEF 860


>gi|158318858|ref|YP_001511366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158114263|gb|ABW16460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 447

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 146/443 (32%), Gaps = 46/443 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            D R  + G +FVA  G   DGH +  QA   GA A + S    L           P +V
Sbjct: 31  LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGRAGAVATLGSRPTPL-----------PTVV 79

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V++ +  L   A+ +  +  +   ++ +TG+ GK+S    +  +   +  +   IG  + 
Sbjct: 80  VEDAQSALQALAAHVVARLRDGLTVVGLTGSQGKTSTKDLLAAVLSSAAPTIATIGSLNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P+  +L              + + A   G        +        N+
Sbjct: 140 ELGVPLTMLRADPATRFL-------------ALEMGARHIGDIAELTGLVAPDIAVVLNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H+    +++A    K  L + L P    A++ ADD     V+         VL+ G 
Sbjct: 187 GQAHLGEFGSREAIARTKGELVQGLAP-GGTAVLGADDP---RVVAMRSLTDGPVLTFGR 242

Query: 273 --QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   L        +   T+           PL G  Q  NA  AA   +A G+   
Sbjct: 243 VEHADVRVLDLALDRLGRPSFTLRTADASAPVTLPLVGGHQALNASAAAAAGLAAGVPLD 302

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           +    L    +   R E          +   Y    +S    L  +  I  GR I V G 
Sbjct: 303 VAAAALATASLSQWRMELRDLACGATLLNDSYNANPDSTRAALDALAAIEGGRRIAVLGE 362

Query: 391 GGDRDQGKRPIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446
             +   G        G+ A   AD+ +   +  R          I  G     +   +  
Sbjct: 363 MRELGDGSEAEHRAVGEYAASRADVVVAVGEAARP---------IADGAGERVVALADNN 413

Query: 447 EAIRTAIEMLNKQDVLVV-AGKG 468
            A+      L   +V++V A +G
Sbjct: 414 AAVDWLRGHLAAGEVVLVKASRG 436


>gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289]
 gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289]
          Length = 826

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 157/406 (38%), Gaps = 31/406 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       ++  I+ V +DSR +      +F A+   + DGH +IP+   +G 
Sbjct: 5   IEKVTTLIGARRYGDKDADISFVLTDSRSLCFPEETLFFALKSERNDGHNYIPELYGRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV +     +       ++  L V  + + L   A R   ++   ++ +TG++GK+ 
Sbjct: 65  RNFVVETVPEDWN---KRYPDSNFLKVVGSLEALQRLAERHRDEYLIPVVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  + L   L+  +  GV    + 
Sbjct: 122 VKEWLYQLLSPQ--------MVVTRSPRSYNSQIGVPLSVLL---LNENTQVGVFEAGI- 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY- 247
            S  G      D I+   G FT LG  H +   + +A    K+ LF      ++ AI+Y 
Sbjct: 170 -SQPGEMSALRDIIQPTIGVFTCLGSAHQENFPSLEAKCKEKLHLF-----HDTQAIVYS 223

Query: 248 ADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFP 305
            DD      +      G +   S   +    ++K +     +  VT +   GK+  +  P
Sbjct: 224 LDDEVLNRCLDEYDYKGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
              +  V N++  A   + +G+  A + E + +L  V  R E V     G  +  D Y  
Sbjct: 284 FIDDASVENSITCAVTALQLGVTPAALGERMAQLEPVAMRLE-VKEGQHGCTLINDSYNS 342

Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             NSL++ L  +         R  ++           + +  K+A 
Sbjct: 343 DFNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAF 388


>gi|86160190|ref|YP_466975.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|109892690|sp|Q2IG30|MURC_ANADE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85776701|gb|ABC83538.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 458

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 138/412 (33%), Gaps = 41/412 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            + +V+SSA    +          I V+    + L+      YG      +A+ G+ GK+
Sbjct: 68  VDVVVISSAVKRDNPEVLEARRRKIPVIPRA-EMLAELMRLKYG------VAIAGSHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    +   +GL    +     +++F  + +L                     ++ V
Sbjct: 121 TTTSMAAHLLAHAGLDPTAV-VGGKVNAFGSNAKLGKGD-----------------YMVV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        R   I       TN+  +H+D+ +T  A        F   +P    AI+ 
Sbjct: 163 EADESDGSFLR---IPPTIAIVTNIDPEHLDHWKTPDALRRG-FVDFVNRVPFYGLAILC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFP 305
            D    + ++    +   RV++ G         + +    +  +      +     F   
Sbjct: 219 IDHPTVQSIL---PDVEKRVVTYGESHQADYRAEAIELSGHAVRFDAFRRDEALGRFEVA 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G     NAL    L   +GI   +  E L     V  RF   G  + G  +  DY H 
Sbjct: 276 MVGRHNALNALAVIALGDEMGIPPLVTREALRSFQGVQRRFTVRGEVA-GVTVVDDYGHH 334

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              ++  L+  R     R++ +F                 A + AD+ ++TD     E+P
Sbjct: 335 PAEVKATLQGAREAFKRRVVCLFQPHRYTRTRDLMAEFATAFNDADVLLLTDIYAAGEEP 394

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                   +   I       +    R E  R A E +   D+++  G G  T
Sbjct: 395 IPGATAANLAEAIRAWGHRDVTVVPRAELARAARERIRPGDLVLTLGAGDVT 446


>gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
 gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
          Length = 508

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 159/467 (34%), Gaps = 56/467 (11%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ-----------GAEAIVVSSAYSLQDF 82
             DSR I+ G +F+A+ G + DGH FI QA+A            G  A+VV      QD 
Sbjct: 31  EFDSRKIREGSLFLALPGARVDGHDFIDQAVAAGATMALAARDVGQPAVVV-KPLGKQDS 89

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS---GKSSVASFVQQICQR 139
           +A   ++ P        + L   A  +  +  ++ L V G +   GK+S    +  + + 
Sbjct: 90  NADAFAHDPDGSGAAVLEALGKLARYVVDELKKDQLHVVGVTGSAGKTSTKDMMATLLRT 149

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +    G  +            TP   YL    + +S++G+ HV+          H  
Sbjct: 150 DGPTVAPKGSFNNEIGHPYTVLQCTPETKYLV---AEMSARGIGHVA----------HLA 196

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVM 257
                  G+  N+G  H+    +++    AK  L E L    +   A++ ADD Y   V 
Sbjct: 197 RIAPPTIGAVLNVGTAHLGEFGSREVIAQAKGELVEALPAAEQGGVAVLNADDDY---VT 253

Query: 258 KRAHNAGCRVLSVGYQ--------GKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPG 308
             A     +V+               +           +    + V +G+ F     + G
Sbjct: 254 GMAPRTQAKVVFFSADESSERHATADYRATNVQLDDFARASFDLHVPDGRTFPIQLQVYG 313

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
             QV NAL A  + +  GID+  V + +        R   V   +    +  D Y    +
Sbjct: 314 AHQVANALAAIAVAVESGIDAEQVAKAMAAHVAASERRMDVQQLTGNIVVINDSYNANPD 373

Query: 368 SLEMILKNIRTITSGRI------IVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTD 417
           S+   +  +    +G          V G     G   +     +   +     D  I   
Sbjct: 374 SMRAGIDALARTAAGPTHQDASSWAVLGQMGELGDSAEDEHSSLGEYLVGRGIDRLIAVG 433

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++           E+  G+       +   A       +   DV++V
Sbjct: 434 ESSNVHALADKAEEL--GL-NTSRVPDTSTAADLVAAEVRPDDVVLV 477


>gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
 gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
          Length = 826

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 167/406 (41%), Gaps = 31/406 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       ++  I+ V +DSR +      +F A+   + DGH +IP+  A+G 
Sbjct: 5   IEKVTTLIGARRYGDKDANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIPELYARGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV     + +  AT   ++  L V  + + L   A R   ++   I+ +TG++GK+ 
Sbjct: 65  RNFVVE---VVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  + L   L+  +  GV    + 
Sbjct: 122 VKEWLYQLLSPQ--------MVVTRSPRSYNSQIGVPLSVLL---LNENTQVGVFEAGI- 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY- 247
            S  G      D I+   G FT LG  H +   + +A  + K++LF      ++ AI+Y 
Sbjct: 170 -SQPGEMMALRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLF-----HDTEAIVYS 223

Query: 248 ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
           AD+    + + +    G ++  SV       ++K +     +  V+   +G+ +  +  P
Sbjct: 224 ADNEVMAQCLSQYDYKGQKLDWSVKNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
              +  V N++  A + + +G+  A + E + +L  V  R E V     G  +  D Y  
Sbjct: 284 FIDDASVKNSITCAVVSLHLGLTPATISERMAQLEPVAMRLE-VKEGQHGCTLINDSYNS 342

Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             NSL++ L  +         R  ++           + +  K+A 
Sbjct: 343 DFNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAF 388


>gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 85/406 (20%), Positives = 145/406 (35%), Gaps = 37/406 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        M     ++  VS+D+R I  G +FVA+ G + DGH ++        EA  
Sbjct: 10  ELAAATGGRWMGAPPAELAGVSTDTRTIVPGALFVALRGERFDGHAYLG-------EASA 62

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A ++    A   +  P+L V +T   L   A     +    ++ VTG++GK++    
Sbjct: 63  KGAAAAVVAHGAAAGAPLPVLAVPDTLAALGAIARHHRRRFHIPVVGVTGSNGKTTTREM 122

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I    G      G  +                + +   L  L  +  + V     +H
Sbjct: 123 IAGILATRGPVLKTEGNLNN--------------EVGVPLTLLGLGPEHRSAVIEMGMNH 168

Query: 193 GLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +  RL  I     G  T     H++   T  A  +AK  L++ L       +  ADD 
Sbjct: 169 PGEIARLAAIAEPYVGVVTLAAAAHLEGLGTVDAVADAKAELYQGL-QDTGIVVANADDP 227

Query: 252 YSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-L 306
               ++KRA  AG R+L+     G +G  + L+      +     + V  ++     P L
Sbjct: 228 ---RMLKRAQAAGKRMLTFAAGAGRRGDVVVLEIGSQGDDGLHFVLGVGNREVPVHIPGL 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NA  AA   I++G     + + L  +  V  R       S    +   Y    
Sbjct: 285 VGAHNAVNAAAAAAAAISLGCSDREIAQGLAAVRPVGRRLRLERLASGLRLVDDCYNANP 344

Query: 367 NSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIA 406
            S+   L+ +  +       V         G   +   R + G+ A
Sbjct: 345 ASMSAALRTLVDLARPDARAVAVLGDMLELGAFEEPAHRELGGEAA 390


>gi|227497586|ref|ZP_03927809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832955|gb|EEH65338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 497

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 103/464 (22%), Positives = 174/464 (37%), Gaps = 47/464 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86
            ++ +V +DSR  + G +FVAIVG + DGH  +PQA A GA A +VS+  +++   A   
Sbjct: 36  TRVTDVVTDSRQAEEGSLFVAIVGERTDGHRHVPQAAAAGARAALVSNVEAVRAAMAEAG 95

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPEN---------ILAVTGTSGKSSVASFVQQ 135
               + P+++V +T   L   A     +  E          ++A+TG+ GK++     +Q
Sbjct: 96  RDPESLPLVIVPDTVAALGGLARSHLAQLREQASSRGETLSVIAMTGSVGKTTTKDLTRQ 155

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I      +   +   +              +  YL              + + AS  G  
Sbjct: 156 ILAAQAPTVAPVASFNNEIGLPLTVLRADHTTRYL-------------VLEMGASGSGHI 202

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            +      L A +   +G  H+    +      AK  +   LLP    A++  DD  S  
Sbjct: 203 AYLTSIAPLDAAAVLMIGHAHMGGFGSVDGVARAKSEIVTGLLPT-GVAVLNLDDPRSAA 261

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEG-KDFDFLFPLPGEF 310
           + + A     RVL+    G      +  A+   +Q    + + + G +       LPG  
Sbjct: 262 MRELAPG---RVLTFSASGDPRADLRASAVELDEQAHAVLDLHLPGARPERLRLGLPGRH 318

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
            V NAL AAGL +A G+D + VL+ L    +       V     G  +  D Y    +S+
Sbjct: 319 NVTNALAAAGLALAAGLDPSQVLQALAGAGLESPHRMDVRECG-GVLVIDDSYNANIDSM 377

Query: 370 EMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              L+ +  +   R  VV                   G++A       +VT     +   
Sbjct: 378 TAALEALPALAGQRRRVVIISEMLELGSASHADHTRTGELAAAAGAQVLVTIGQGAAPAA 437

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTA---IEMLNKQDVLVVAG 466
           +  RA  +H     IE  +   AI         L   D +++ G
Sbjct: 438 QAARAAGVH----TIELPDAQAAIELLDGGHSPLRPADAVLIKG 477


>gi|85707767|ref|ZP_01038833.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
 gi|85689301|gb|EAQ29304.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
          Length = 478

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 134/424 (31%), Gaps = 51/424 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SSA    +            VV        L          ++ +AV GT GK
Sbjct: 67  GAAVVVTSSAVRRTNPEVAHALENRTPVVRRAEMLAELMRL-------KSTVAVAGTHGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  +    G     +     I  +  + R+     +                  
Sbjct: 120 TTTTSMIASLLD-CGEIDPTVINGGIIEQYGSNARMGDSDWM-----------------V 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA        RLDG        TN+  +H+D++        A +  F   +P    AI+
Sbjct: 162 VEADESDGSFLRLDGT---IAVVTNIDPEHLDHYGDFDGVKKAFVE-FIHNVPFYGAAIL 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------EGKDF 300
             D    + V+    +          Q     +  V    +     + V      + +  
Sbjct: 218 CVDHPEVQAVIGDVRDRKVVTYGFSLQADICGV-NVRPTESGNTFDVIVRQRGEEDRRIE 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGR 357
               P+PG   V NAL A  + I +G     +         V  RF  VGT    +    
Sbjct: 277 GVHLPMPGRHNVQNALAAIAVAIEMGCSDETICNGFGSFSGVRRRFTKVGTVPFPTGHAT 336

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           I  DYAH    +  +L   R  T      GR+I V                +   + AD+
Sbjct: 337 IIDDYAHHPVEIRAVLGAAREATEAAGVEGRVIAVMQPHRYTRLNDLMDDFQNCFNEADM 396

Query: 413 AIVTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +T      EDP E + +E +       G        +  +   T  E L + D++V  
Sbjct: 397 VFITPVYEAGEDPIEGVNSESLVTGLKSRGHRSAQTTPDHDDLAATLAEELREGDMVVCL 456

Query: 466 GKGH 469
           G G 
Sbjct: 457 GAGD 460


>gi|297616982|ref|YP_003702141.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144819|gb|ADI01576.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 461

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 142/407 (34%), Gaps = 41/407 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVSSA    +          I V+    + L+L +++  G      +A+ G  GK++  
Sbjct: 69  VVVSSAIPPDNPEIQAAKRLGIPVIKRG-EMLALLSNKYRG------IAIAGAHGKTTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +GL    I     I                + ++L             EA 
Sbjct: 122 SMISLVLEDNGLDPTFI-----IGG-------------QMQRSLVNAKLGRGELFVAEAD 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                  RL          TN+  DH+DY+Q+++   +A  +   ++LP+    +   D 
Sbjct: 164 ESDASFLRL---HPHVAVVTNVEDDHLDYYQSEENIRSAFQQFVNQVLPEGFAVLFSGD- 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              + +      +  R++  G+        +++ A            G+   D    +PG
Sbjct: 220 ---RFLAGLKQKSRARLVYYGFDDNSDYFCREIRACGIGSAFKAYCRGQMLGDVYLKVPG 276

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NA+ A  +   +G++   +   L        RFE VG    G  +  DYAH    
Sbjct: 277 IHNVLNAMAAIAVGCEVGVNFEGITRALGGFLGAKRRFEVVG-KLNGITVIDDYAHHPTE 335

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           ++  +   R     R+IV+F                 A   +D+ I+TD     E P   
Sbjct: 336 IKATILAARQFHRSRLIVIFQPHRYTRTKLLGHQFGPAFQGSDMVIITDVYGAGEVPIPG 395

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E I    +      +    + E +    + L   D+++  G G 
Sbjct: 396 VTGELIYKSAVAEGCNAVYIPAKNEVVDYVAKQLKSDDLVITMGAGD 442


>gi|256419275|ref|YP_003119928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
 gi|256034183|gb|ACU57727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
          Length = 438

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 141/416 (33%), Gaps = 50/416 (12%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I+QL     Q+       V +D+R ++AG IF A+ G   +G+ +   A+ +GA   VV 
Sbjct: 15  IDQLYDIYRQYP-----SVQTDTRQLKAGDIFFALKGPNFNGNTYAAAALEKGAVFAVVD 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      + +N       +  + L   A R         LA+TGT+GK++    V 
Sbjct: 70  EEAYYTQPDKMMLTN-------DALETLQQLALRHRQSLNIPFLAITGTNGKTTTKELVS 122

Query: 135 QIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +          +G  +  IG   TI                    L   +   +  + +
Sbjct: 123 TVLASAFKTTATAGNLNNHIGVPLTI--------------------LRIPADAEMAVIEM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A+     +          G  TN+G+ H++   + +    AK  L++ L   +    + 
Sbjct: 163 GANHEHEIEAYCKVALPTHGIITNIGKAHLEGFGSPEGVRRAKGELYDFLRNNKGTVFVC 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +  Y  ++ K        V++ G +    +  +  A      V ++           L 
Sbjct: 223 NEYPYLVDMSKGIQT----VITYG-EAAADYTGQPLADSALLSVKVTGHEGIGQIDSQLV 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G +   N + A  + +  G+ +  +   +        R + +   S    I   Y    +
Sbjct: 278 GAYNFPNIMAAVAVGLHFGVPAEKIQHAISSYVPSNNRSQVMKQGSN-TIIMDAYNANPS 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDD 418
           S++  + N   IT+ + +++ G   +           +           + +V  D
Sbjct: 337 SMKAAIDNFAGITAEKKVLLLGGMMELGDDSVAEHQALVDLLQRTHWHAVVLVGGD 392


>gi|298531034|ref|ZP_07018435.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509057|gb|EFI32962.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 453

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 94/412 (22%), Positives = 148/412 (35%), Gaps = 44/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A    +       +  I V+    + L+       G      +AV GT GK+
Sbjct: 65  AQVVVKSTAVREDNPEILQARSAGIPVIPRA-EMLAELMRLKTG------VAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  SF+  I + +GL      PT  I                     + L   G   ++ 
Sbjct: 118 TTTSFLGTIFKEAGLD-----PTVIIGGRLNKYGS------------NALPGTGEYLIAE 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S G     L     I    TN+G DH+DY++       + +R F   +P     ++ 
Sbjct: 161 ADESDGSFLTLL----PIINIVTNIGADHLDYYRDLDEIRESFVR-FMNNVPFYGLNVVC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPL 306
            DD   ++V+ R       VL+ G+Q +     ++ +     Q      +          
Sbjct: 216 GDDPEIRQVLDRVKRP---VLTYGFQEQSRLRAEILSTSPGSQFNVFHDQNFWGRVKLNH 272

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V N L A G+ I  GID   +L  L     V  RFE  G       +  DY H  
Sbjct: 273 PGRHNVLNCLAAIGVAIQAGIDKQDILRSLADFGGVGRRFERKGIKDD-VIVVDDYGHHP 331

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSED 424
             +   L+  R     R +VV      R    R   G+    L  AD+ ++T+  P SED
Sbjct: 332 TEIAATLETARQCHPDRRLVVLFQP-HRFTRTRDFFGEFCRVLAGADLLLLTEIYPASED 390

Query: 425 PEKIRA--EIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKGH 469
           P        +  G+        R      EA R    +L + D+ +  G G+
Sbjct: 391 PIPGVNGWSLAQGVMQVARTPVRFYQSLDEAGRDLDSVLKQGDLFMTLGAGN 442


>gi|15837400|ref|NP_298088.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa 9a5c]
 gi|23821887|sp|Q9PF80|MURC_XYLFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9105694|gb|AAF83608.1|AE003919_19 UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa 9a5c]
          Length = 477

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 90/422 (21%), Positives = 154/422 (36%), Gaps = 55/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I                L  A +      
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGA 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL     +    TN+  DH++ +    +        F + LP  
Sbjct: 164 GQWLVVEADESDGSFLRL---NPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    EV + A  A   V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDDP---EVAELAGKARRHVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---- 355
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            R+  DY H    LE +   +R      R++V F          +       L   D  +
Sbjct: 338 VRLIDDYGHHPRELEAVFAAVRGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSSVDALV 397

Query: 415 VTDDNPRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +++  P  E      D + +   I   G    +  G     I    ++L + D+L++ G 
Sbjct: 398 LSEVYPAGEVPIPGADAKALARAIRARGRSEPVVVGQVASLIEVLPDVLQEGDLLLMMGA 457

Query: 468 GH 469
           G 
Sbjct: 458 GD 459


>gi|325288380|ref|YP_004264561.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963781|gb|ADY54560.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 875

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 138/377 (36%), Gaps = 37/377 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++V   + ++      +  ++G TS+   F  D  L T        A  
Sbjct: 481 PIIAVTGTNGKTTVVRMINKVLLE---NMVRVGMTSSEGVFINDKLLVTGDMTGPQSAQI 537

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L    V    +E +  G+ +  L          TN+  DH+  +   T +     KM L
Sbjct: 538 VLRHPDVQAAVLETARGGILRAGLAYDYADVAVITNVSDDHLGQYGIETVEEMAKVKM-L 596

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--------- 284
             E + K    ++ ADD       KR      +V+          L K  A         
Sbjct: 597 VAERVNKYGYVVLNADDPIVAGFDKRTE---AKVIYFSLDPANRKLCKHIALGGTGIFVD 653

Query: 285 ---IHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              I   Q   +    + ++    +    +  + N L A G C A+G  ++ + + L+K 
Sbjct: 654 KNQIKLGQGFDVQQICKIQNIPLTWSGKAKHNIENILAAIGACWALGYSASQMRKSLKKF 713

Query: 340 HV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
                   GR E+   N  G  I +DYAH    L+  +  +R I   RII   G  GDR 
Sbjct: 714 GSENKDNYGRLEYYEVN--GVTIILDYAHNCAGLKEAISTLRQIKKRRIIGCIGLPGDRR 771

Query: 396 QGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-----AEIIHGI--PGFIEKGNRIE 447
                   +IA    D   + +D   R     +I        I  G       +  +  E
Sbjct: 772 NEMVKKYARIAAQGFDDIFIKEDLCKRGRQTGEIAEILHNELIKAGFQEKNLKKVLDEKE 831

Query: 448 AIRTAIEMLNKQDVLVV 464
           + R AI      D++VV
Sbjct: 832 SFRQAISQAEPGDIVVV 848


>gi|294670616|ref|ZP_06735494.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307655|gb|EFE48898.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 469

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 140/421 (33%), Gaps = 50/421 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ +V S+A    +   T      I V+      L+       G      +A+ GT G
Sbjct: 63  QGADVVVTSTAVKKDNPEVTAAVAQQIPVIPRALM-LAEMMRFKDG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG   T +         +         ++       + 
Sbjct: 116 KTTTTSLTASILAAAGLDPTFVIGGKLTAAGTNARLGKGSY-------IVAEADESDASF 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +                +  +    TN+  DH+D +       +     F   +P    A
Sbjct: 169 LY---------------LTPLMAVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTIS-----VEGK 298
            +  D  + + ++ R         + G      I+   V +I  + + T+       E +
Sbjct: 214 FLCIDSEHVRAILPRISKPHA---TYGLDDSADIYATDVESIGAQMKFTVHARLKGHEPR 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSR 354
            FD +  LPG   V NAL A G+ +  G+D   V   LE    V  RF+  G        
Sbjct: 271 TFDVVLNLPGRHNVLNALAAIGVALECGVDEEAVRRGLEGFAGVGRRFQSYGEIELPQGG 330

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D+ 
Sbjct: 331 KALVVDDYGHHPVEMAATLSAARGAYPDKRLVLAFQPHRYTRTRDLFDDFSKVLNTVDVL 390

Query: 414 IVTDDNPRSEDP-----EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           ++TD     EDP       +   +   G    +   +  E     +++L   DVL+  G 
Sbjct: 391 VLTDVYAAGEDPLPQDSRALARNVRAYGKVDPLYCADVNELPAMLLDVLRDGDVLLNMGA 450

Query: 468 G 468
           G
Sbjct: 451 G 451


>gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 427

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 143/437 (32%), Gaps = 63/437 (14%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            ++  DSR +  G  FVA+ G +  G+ FI  A+A+GA  ++    +             
Sbjct: 28  RDLVWDSRQVTPGAAFVALPGTRTHGNAFIEDAVARGAAFVLTDRPHPKA---------- 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + V +  + L      L  + P  ++ VTG+ GK++    + Q            G  
Sbjct: 78  --VQVQDPWQALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQGLAW----PAPEGNL 131

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +T  + A+      P                   V +     G  Q  +   +   G  T
Sbjct: 132 NTPPALARFFLHLPPQAPG-------------AVVELGIDRVGEMQELVFLAQPTIGVLT 178

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++   + +     K +L +        + +      +   +         V + 
Sbjct: 179 AIAPAHLEALGSLEVVAREKSQLLQ-------ASRVRIASTQAARYLSLPE-----VRTY 226

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G++      + +       +              P PG      AL A  +   +G D  
Sbjct: 227 GFEEGTFQGRDLTITPEGTRFRY----GQRTLHLPYPGYGPALGALAALAVAEVLGQDLD 282

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVF 388
            V +HLE L + PGR   V    RGG +++   Y     S+   L+++     GR IVV 
Sbjct: 283 QVCQHLEALRLPPGRMHLV---RRGGVLFIHDAYNANPASVRAGLESLDRF-PGRKIVVL 338

Query: 389 GCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           G   +             ++A  +A  A+   +            ++     G +   + 
Sbjct: 339 GTMKELGPQAEAYHLEAARLAARVAQRAVFVGEY---------APQMARLFEGALAVTDA 389

Query: 446 IEAIRTAIEMLNKQDVL 462
             A +     +   DV+
Sbjct: 390 ETARQALKAQVRPGDVI 406


>gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51]
 gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 468

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 161/473 (34%), Gaps = 45/473 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +  V +DSR +  G +FV + G K D H F+  A A GA A +      ++   A 
Sbjct: 23  PDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAAFASGAAAALTQEHTRMEAEEA- 81

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  + VD+T+  L   A+    +    ++ +TG++GK++           +G    
Sbjct: 82  ------WIAVDSTQLALQHIAAAYRQRFSIPVVGITGSAGKTTTKEMTALALS-AGYKVM 134

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-L 204
           + G                 S I L   +   S +    V     S   +  RL  +   
Sbjct: 135 KTG-------------GNHNSQIGLPLMMFQFSREHEAAVVEMGISDFGEMARLAQVAEP 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNLG  HI   +TQ+     K+ + +    + S   +  DD     +  R     
Sbjct: 182 KYAVMTNLGITHIGQLKTQENILREKLHITDRFT-QGSVLFLNGDDPMLAGL--RGKTGY 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCI 323
             V            + +              G++  + + P+ G   V +AL A  +  
Sbjct: 239 EAVFYGTAPWCDFRAEGITVQGETTAFRCLAPGRESVEVILPVLGMHHVLDALAALAVAE 298

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
            +G+        L     +  R +    N     +  D Y  +  + +  L  +    +G
Sbjct: 299 RLGVPLDRAAAALGDYRPLAMRQQIYHVNE--VAVIDDSYNSSPGAAKSSLSVLAGFRAG 356

Query: 383 RIIVVFGCGGDRDQGKRPIMGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           R + V     +  +  R    +  +    + + I+    P ++   +    +  GI   +
Sbjct: 357 RRVAVLADMLELGEYSRQAHFEVGVCAAESGVDILLTVGPEAKAVAEGARSVRSGIDCRV 416

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              NR +A       L+  D ++V             G + M  D +I+R +L
Sbjct: 417 FDHNR-QAAAELKSFLSPGDAVLV------------KGSRGMHTD-EIVRALL 455


>gi|71898202|ref|ZP_00680376.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71731941|gb|EAO33998.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 477

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 88/422 (20%), Positives = 153/422 (36%), Gaps = 55/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I                L  A +      
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGA 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL     +    TN+  DH++ +    +        F + LP  
Sbjct: 164 GQWLVVEADESDGSFLRL---NPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    E++ +A      V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDDPEVAELVGKARR---HVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---- 355
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            R+  DY H    LE +    R      R++V F          +       L   D  +
Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSSVDALV 397

Query: 415 VTDDNPRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +++  P  E      D + +   I   G    +  G     I    ++L + D+L++ G 
Sbjct: 398 LSEVYPAGEVPIPGADAKALARAIRARGRSEPVVVGQVASLIEVLPDVLQEGDLLLMMGA 457

Query: 468 GH 469
           G 
Sbjct: 458 GD 459


>gi|332981585|ref|YP_004463026.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
 gi|332699263|gb|AEE96204.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
          Length = 469

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 137/413 (33%), Gaps = 40/413 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V ++A    +      +   I  VD    FL               +AV GT G
Sbjct: 69  KGADLVVYTAAIHNDNPELNEANGLGIPTVDRA-TFLGQIMKNYG-----KGIAVAGTHG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I Q +GL    +            N     S  ++ +A  Y+ S    + 
Sbjct: 123 KTTTTSIISIILQNAGLDPTVL--VGGELDAIGGNVRVGESQYFVTEACEYVESFLKFY- 179

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                    N+ RDH+DY +     +NA +  F +L P +   +
Sbjct: 180 ------------------PYIAVILNIERDHLDYFKDLDDIYNAFLS-FAKLTPDDGYVV 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDF-DF 302
              DD   ++++    +   + +S G            A   K      I  +G +   F
Sbjct: 221 GCIDDPLVEQLLSDMPD---KAISYGIDKPAHWTADDIAFDKKGFPSFNIYCDGLNMGRF 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   +YNAL +  +    GID  ++ E L        RFE  G    G  +  DY
Sbjct: 278 SLSIPGRHNIYNALASVAVADLCGIDIEMIKESLRLYKGAHRRFEVKGRLEEGVTVIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    ++  ++         I  VF                 A    D  I+TD     
Sbjct: 338 AHHPTEIKATIQAALNYPHNHIWCVFQPHTYTRTRLLLDEFASAFYGIDHLIITDIYAAR 397

Query: 423 E-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E D   I ++     I       I   +     R  +E     D+++  G G 
Sbjct: 398 EVDDGSINSKDLALRINQAGQNAIYMEDFSSIERYILENCQPGDIIITMGAGD 450


>gi|269118795|ref|YP_003306972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612673|gb|ACZ07041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 435

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 145/409 (35%), Gaps = 55/409 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++    +F +++             +IN V  +S  ++   +F+AI G    G+ +I
Sbjct: 9   MTLEEFGISNFLDIL-------------EINNVLINSGEVRENDVFIAIRG----GNSYI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  +GA  ++         +           +V+++ KFL  FA          I+ +
Sbjct: 52  QEAAEKGA-YVIYDDKTKKTPYPKA-------FLVNDSIKFLQKFAENWRNILDLKIIGI 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   + Q+           G  +              S  +L          
Sbjct: 104 TGSNGKTTVKDIIYQLLSTKYKGKKTEGNLNNHIGLPVSLLRAENSDDFL---------- 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G         K   G  TN+G  H+++  +++  F AK  + + +  K
Sbjct: 154 ---VLEMGMSGFGEIDLLAAIAKPDYGIITNIGDSHLEFLGSRENVFKAKSEIIKHVKAK 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                +  DD +  ++       G +V + G        K +    +  +  ++   +  
Sbjct: 211 ---MFLNGDDPFLGDL------PGIKVSADGKSTADYRAKNINLSGDGTKFDLN---EGL 258

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L GE  + N L    +    GI +  + +  + + +   RF+ +  N     I  
Sbjct: 259 TLETNLIGEHNILNLLFGIAISEEFGIKTEDLADEFKNIKLTAMRFQKI-ENGNIIYIND 317

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKI 405
            Y  +  S+E  +     I + R  VV         ++D      + KI
Sbjct: 318 AYNASPISMEKAILTFSDIYNDRYKVVILGDMLELGEKDAEFHEELEKI 366


>gi|258654049|ref|YP_003203205.1| UDP-N-acetylmuramate--L-alanine ligase [Nakamurella multipartita
           DSM 44233]
 gi|258557274|gb|ACV80216.1| UDP-N-acetylmuramate/alanine ligase [Nakamurella multipartita DSM
           44233]
          Length = 482

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 149/417 (35%), Gaps = 46/417 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A+VVS+A    +          I VV       +L   R         + V GT GK
Sbjct: 79  GPTAVVVSTAVRPDNPEVVAARAAGIAVVRRADALAALMTDR-------RSVCVAGTHGK 131

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S +    Q +G   SF IG   T S                   L     QG   V
Sbjct: 132 TSTTSMLTVALQHAGLDPSFAIGGELTGSG------------------LGAHHGQGDVFV 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S G                TN+  DH+D+H T +AY  A    F E +      +
Sbjct: 174 AEADESDGSFL----SFSPHGAIVTNIEPDHLDHHGTAEAYT-AVFDQFIERIEPGGFLV 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKDFDF 302
           I ADD  S  +  R      R+++ G     +    V    +    + V    +G     
Sbjct: 229 ICADDPGSAALAARVR--LRRLVTYGRAADAVVRLAVDPASDPATGEPVVTLADGTAVPL 286

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG+  + NA+ A    + +G+D+ L+   L     V  RFE  G    G  +Y DY
Sbjct: 287 RLTVPGDHMLLNAVAALAAGVELGVDADLLAAGLAGYTGVRRRFELKGVAG-GVTVYDDY 345

Query: 363 AHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AH    +   L   R +    GR++VVF                 AL  AD+ +V D   
Sbjct: 346 AHHPTEVAAQLAAARGVVPADGRLVVVFQPHLYSRTATFATEFGAALGTADLVVVLDIYG 405

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             EDP      E I A +  G P       R  A R   E++   D+++  G G  T
Sbjct: 406 AREDPRPGVTGELITAAVPAG-PDVRYHPERSTAARFVAEIVRAGDLVITMGAGDVT 461


>gi|218780970|ref|YP_002432288.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
 gi|226711863|sp|B8FBR7|MURC_DESAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218762354|gb|ACL04820.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 456

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 140/414 (33%), Gaps = 43/414 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + +VVSSA   ++          I V+        L   +         +A+ G  G
Sbjct: 63  KGCDVVVVSSAIRQENPETASAREQGIPVIPRAEMLAELMRLKYS-------VAIAGAHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL      PT  I                  K LS  S+  + H 
Sbjct: 116 KTTTTSIVADVLAAGGLD-----PTVVIGG----------------KLLSIGSNAKLGHG 154

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +           +       TN+ R+H+D+++      +A  + F + +P    ++
Sbjct: 155 EFIVAEADESDGSFLKMSPSIAVVTNIDREHMDHYKDMDEIKDAFAQ-FVDKIPFYGLSV 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           +  D    ++++   +    R ++ G      +    V       + T+    K      
Sbjct: 214 LCLDSEPVQDLIPFINK---RYVTYGLTTQADLQAGDVTTEGLTSRFTVRHNKKRLGRIT 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG   VYN+L +  + + + +    +   LE L  V  R E  G    G  +  DY 
Sbjct: 271 LNLPGLHNVYNSLASIAVGLELNVPFENIKAALESLSGVHRRLETKGKVG-GIVVMDDYG 329

Query: 364 HTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +   L+ +  +    R+ V+F                 +   AD  +V    P  
Sbjct: 330 HHPTEIRTTLQAVNDSYPERRVGVIFQPHRYSRTQSLFEDFARSFYQADYLVVLPIYPAG 389

Query: 423 EDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P        +   +   G    I   ++  A++   + + + DVL+  G G 
Sbjct: 390 EKPIPGVDSVSLCKALKAYGHKHVIHAPSKESALQELDKTVREGDVLITLGAGD 443


>gi|145641280|ref|ZP_01796860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R3021]
 gi|145274117|gb|EDK13983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 22.4-21]
          Length = 399

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 145/407 (35%), Gaps = 33/407 (8%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S            P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 3   QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 54

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +    T  +F  D  +           L          +
Sbjct: 55  KTTVKEMTASILQHTAADSEAV--LFTNGNFNNDIGVPL-------TLLRLTEKHRFAVI 105

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L  K   AI
Sbjct: 106 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLT-KNGVAI 164

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I A+  +     K   N   +     + GK   +K V         T+     + D   P
Sbjct: 165 INAEHNHLDIWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 220

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 221 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 280

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
            +SL   +  +++  + RI+ V       +      R +   I L   D+          
Sbjct: 281 KDSLCAAIDVLKSYDAFRILCVADMKELGENSLAIHREVGQYINLVNLDLVC------SY 334

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            +   + +E + G   F +K   ++ +   IE  L +   +VV GKG
Sbjct: 335 GNESAVISEAVLG-KHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKG 380


>gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
 gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
          Length = 831

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 152/410 (37%), Gaps = 35/410 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       +E  I  + +DSR +      +F A+   + DGH +IP+   +G 
Sbjct: 5   IEKVTTLIGARRYGDKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +  VV+    +    A+   +   L V NT + L   A R   +    ++ +TG++GK+ 
Sbjct: 65  KNFVVT---EVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  ++L    +      V      
Sbjct: 122 VKEWLYQLLSPQ--------MCVTRSPRSYNSQIGVPLSVWLMNEQTE-----VGVFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+      TN+G  H    +++      K+ LF          +  A
Sbjct: 169 ISQPGEMLALRDIIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLF----HDARTVVYNA 224

Query: 249 DDAYSKEVMKRAHN-------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDF 300
           DD   + V+ +  +             SV  +   + +K +    +   VT   + G++ 
Sbjct: 225 DDELVERVLAQMESTLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEEN 284

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  P   +  + N+++ A + + IGI    +   ++ +  V  R E V     G  +  
Sbjct: 285 WYSIPFIDDASICNSIICAIVALRIGIAPDELDRRMQGIEQVAMRLE-VKEGQHGCTLIN 343

Query: 361 D-YAHTSNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           D Y    NSL++ L  +         R  ++        +    +  +++
Sbjct: 344 DSYNSDINSLDIALDFMNRRPDHKGRRHTLILSDIFQSGEEPTALYQEVS 393


>gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
 gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
          Length = 831

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 152/410 (37%), Gaps = 35/410 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       +E  I  + +DSR +      +F A+   + DGH +IP+   +G 
Sbjct: 5   IEKVTTLIGARRYGDKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +  VV+    +    A+   +   L V NT + L   A R   +    ++ +TG++GK+ 
Sbjct: 65  KNFVVT---EVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  ++L    +      V      
Sbjct: 122 VKEWLYQLLSPQ--------MCVTRSPRSYNSQIGVPLSVWLMNEQTE-----VGVFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+      TN+G  H    +++      K+ LF          +  A
Sbjct: 169 ISQPGEMLALRDIIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLF----HDARTVVYNA 224

Query: 249 DDAYSKEVMKRAHN-------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDF 300
           DD   + V+ +  +             SV  +   + +K +    +   VT   + G++ 
Sbjct: 225 DDELVERVLAQMESTLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEEN 284

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  P   +  + N+++ A + + IGI    +   ++ +  V  R E V     G  +  
Sbjct: 285 WYSIPFIDDASICNSIICAIVALRIGIAPDELDRRMQGIEQVAMRLE-VKEGQHGCTLIN 343

Query: 361 D-YAHTSNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           D Y    NSL++ L  +         R  ++        +    +  +++
Sbjct: 344 DSYNSDINSLDIALDFMNRRPDHKGRRHTLILSDIFQSGEEPTALYQEVS 393


>gi|91200088|emb|CAJ73131.1| similar to UDP-N-acetylmuramate-L-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 498

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 85/411 (20%), Positives = 144/411 (35%), Gaps = 45/411 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS+A    +    +     I VV    + L        G      +A++GT GK++ +
Sbjct: 86  VIVSAAIQEGNPELKVARQLGIKVVK-YSQILGSLMQEKRG------IAISGTHGKTTTS 138

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I +++     ++ PT  I     D               +   ++   +     +
Sbjct: 139 AMISTILKKA-----ELDPTYVIGGEVPDIGGNAHLGKG-----NLFVAEACEY-----N 183

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD      +    G  TN+  DH+DY+   +   NA    F  L+ K    ++  DD
Sbjct: 184 SSFLD------LVPSIGVITNIEEDHLDYYGNLEEIVNAFGH-FANLIAKNGLLVVNDDD 236

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK-QQVTISVEGKDF-DFLFPLP 307
              + V   A  + C+  +         + KK+        +  +   GK F DF   +P
Sbjct: 237 ---RNVAVAAKRSVCKRETYSLRHTSHWYAKKILPTTQGINKFRVYNRGKIFGDFWLKIP 293

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  +C +IG+D  ++   LE       RF+ V   +    I  DYAH   
Sbjct: 294 GSHNILNALAAIAVCTSIGVDKEIIKTSLESFKGAKRRFQIVAIKNN-ITIIDDYAHHPT 352

Query: 368 SLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDP 425
            +++ LK  R +   R I  V+                 +  LAD   + D    R  D 
Sbjct: 353 EIDVTLKAARELYPARKICCVYQPHQYSRTRHLLKKLSESFYLADKVALADIYESRDNDF 412

Query: 426 E-------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E       K+  EI                           DV++  G G 
Sbjct: 413 EKTSISSLKLYEEIRKTGVDIQYYPQMEYITDMLCLNAKPGDVIITMGAGD 463


>gi|71275121|ref|ZP_00651408.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|170731110|ref|YP_001776543.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M12]
 gi|229620438|sp|B0U4Z6|MURC_XYLFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71163930|gb|EAO13645.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|167965903|gb|ACA12913.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M12]
          Length = 477

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 90/422 (21%), Positives = 153/422 (36%), Gaps = 55/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I                L  A +      
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGA 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL     +    TN+  DH++ +    +        F + LP  
Sbjct: 164 GQWLVVEADESDGSFLRL---NPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    EV + A  A   V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDDP---EVAELAGKARRHVMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---- 355
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            R+  DY H    LE +    R      R++V F          +       L   D  +
Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSSVDALV 397

Query: 415 VTDDNPRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +++  P  E      D + +   I   G    +  G     I    ++L + D+L++ G 
Sbjct: 398 LSEVYPAGEVPIPGADAKALARAIRARGRSEPVVVGQVASLIEVLPDVLQEGDLLLMMGA 457

Query: 468 GH 469
           G 
Sbjct: 458 GD 459


>gi|325134883|gb|EGC57516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M13399]
          Length = 452

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVDPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSVGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGVDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|296284497|ref|ZP_06862495.1| UDP-N-acetylmuramate--L-alanine ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 481

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 137/410 (33%), Gaps = 51/410 (12%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +  A + +  P++        L            ++ +A+ GT GK++  S +  +   
Sbjct: 82  PEVEAALENRIPVVRRAEMLAELMRL---------KSTIAIAGTHGKTTTTSMIAGLLD- 131

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G     +     I  F  + RL     +                  VEA        RL
Sbjct: 132 CGEIDPTVINGGVIEQFGSNARLGDSDWM-----------------VVEADESDGSFLRL 174

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG        TN+  +H+D++   +    A +  F   +P    AI+  D    + V+ +
Sbjct: 175 DGT---IAVVTNIDPEHLDHYGDFEGVKRAFVE-FIHNVPFYGAAILCVDHPEVQAVIAK 230

Query: 260 AHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYN 314
             +          Q     +  K  A  N+  V +   G++     +   P+PG   V N
Sbjct: 231 VRDRRVITYGFSLQADICAVNVKPEAGGNRFDVMVRQRGQEDRRIENVFLPMPGRHNVQN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEM 371
           AL A  + + +     ++ E   +   V  RF  VGT         +  DYAH    +  
Sbjct: 291 ALAAIAVSLEMNCSDEVIREGFARFGGVRRRFTRVGTVPVEGGSATVIDDYAHHPVEIRA 350

Query: 372 ILKNIRT-----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +L   R       T  R+I V         G+     +   + AD   V       EDP 
Sbjct: 351 VLSAARESVDAMDTPARVIAVMQPHRFSRLGELMGDFQACFNEADQVYVAPVYAAGEDPV 410

Query: 427 K--IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +    A ++ GI            +R E +R     L   D+++  G G 
Sbjct: 411 EGVDAAALVDGIKSLGHRHAQTIADREELVRALAPQLEPGDLVLCLGAGD 460


>gi|297559874|ref|YP_003678848.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844322|gb|ADH66342.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 486

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 92/433 (21%), Positives = 148/433 (34%), Gaps = 53/433 (12%)

Query: 67  GAEAIVVSSAYSLQ-----DFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILA 119
           GA+  V  +A +L        S+ IR + P LV    R  + L   A+          +A
Sbjct: 60  GADVHVGHAADNLGTAETLVVSSAIREDNPELVEARRRGLRVLPRAAALGALLLGREGVA 119

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V+GT GK++  S V  + Q  G     +     +++                        
Sbjct: 120 VSGTHGKTTTTSMVAVVLQHVGADPGYVIGGKLVTTGLG--------------------- 158

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  V A            +       TN+  DH+D +   +          + +  
Sbjct: 159 ADAGIGEVIAVEADESDGSFLMLSPKIAVVTNVEADHLDNYSGIEEIHANFASFVDRV-- 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EG 297
            E   ++  DD  ++ V + A   G RVL+ G  +     + +V A     + TI    G
Sbjct: 217 -ERTLVVGVDDPGARRVAELARERGKRVLTYGEAEDADYRVTRVRARGFTTEFTIRTANG 275

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D    +PG   V NA  A  +   +G D  + +E +        RFE  G    G  
Sbjct: 276 EPVDGQLAVPGRHNVLNAAAAVAVADELGHDLEVAVEGIADFAGAARRFEPKGEAG-GVA 334

Query: 358 IYVDYAHTSNSLEMILKNI---------------RTITSGRIIVVFGCGGDRDQGKRPIM 402
           +Y  YAH    +E  L+                 R    GR++ +F              
Sbjct: 335 VYDSYAHHPTEIEADLRATRAALESLAEEAREDGREHAGGRVVALFQPHLYSRTRIFAEE 394

Query: 403 GKIALDLADIAIVTDDNPRSEDPE-KIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNK 458
              AL LAD  +VT+     EDPE  + AE+I              R +A+    E+   
Sbjct: 395 FAAALGLADEVVVTEVYAAREDPEPGVTAELITSRVAHDRVWYVPGRDDAVLRVAELAGP 454

Query: 459 QDVLVVAGKGHET 471
            D+++  G G  T
Sbjct: 455 GDIVLTMGAGDVT 467


>gi|254515245|ref|ZP_05127306.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
 gi|219677488|gb|EED33853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
          Length = 459

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 156/458 (34%), Gaps = 37/458 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q           + + V+ DSR +  G +F+A+ G + DGH F+  AIA+GA A +V 
Sbjct: 10  IAQRLGVAYTGASLQFSGVAIDSRQVSPGDLFIALPGERVDGHDFVDAAIARGAIAALVE 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         + P L V N    LS             ++A+TG+ GK++V +  +
Sbjct: 70  RPVQV---------SIPCLQVSNCLDALSEIGRASRDLSASVVVAITGSCGKTTVKNLCR 120

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I   +G +    G  +                 Y               V + A+  G 
Sbjct: 121 SIFSEAGSTVATAGNYNNEIGVPLTLARLQDDTRY-------------AIVEMGATKRGD 167

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             H     +    +  N    H++   +     + K  +++ L      AI+  D  +  
Sbjct: 168 IAHLCTLARPSITTVLNAMEAHLEGFGSVADVADIKAEIYDGL-GSSGAAIVNLDQPWVP 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKDFDFLFPLPGEFQ 311
               R   AG + LS         L               T+ + G+     +PLPG   
Sbjct: 227 LWRDRIAQAGAQALSYSLDDSSADLYVSGLQECGLEGSAFTLHIRGESRALKYPLPGRHS 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL AA L IA G+    ++  LE     PGR +     +    I   Y     S+  
Sbjct: 287 VANALAAAALAIAAGLSLDQIVVGLEHAQAEPGRLQSERLGNDKTLIDDSYNANPGSVRA 346

Query: 372 ILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +  +       ++++            +   MG++A        V          E +R
Sbjct: 347 AITLLAATAGESLLILGEMLELGAESPERHAEMGELARLSGITRFVGVG-------EAVR 399

Query: 430 AEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAG 466
             +           +R EA+     ++L   D ++V G
Sbjct: 400 PAVEAFGANGQWFASR-EALTPKLADLLGASDTILVKG 436


>gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 447

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 141/443 (31%), Gaps = 46/443 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR  Q G +F+A  G   DGH +  QA   GA A++ S    L           P +V
Sbjct: 31  LDSRRAQQGSLFLAFAGEHVDGHAYAEQAGQAGAAAVLGSRPTPL-----------PTVV 79

Query: 95  VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            ++T+  L   A  + G+  + +    VTG+ GK+S    +  +   +G +    G  + 
Sbjct: 80  AEDTQAALQALAVHVVGRLRDRLTVFGVTGSQGKTSTKDLLAAVLSSAGQTIATFGSFNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                     T  +  +L              + + A   G        +        N+
Sbjct: 140 ELGVPLTMLRTEATTRFL-------------ALEMGARHLGDISELTGLVAPDIAVVLNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H+    +++A   AK  L + L P    A++ ADD     V          VL+ G 
Sbjct: 187 GQAHLGEFGSREAIAKAKGELVQGLAP-GGTAVLNADDP---RVAAMRSLTDRPVLTFGR 242

Query: 273 --QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   L        +   T+           P  G  Q  NA  A    +  G+   
Sbjct: 243 TEHADVRALGLALDRLGRPSFTLRTADASAPVSLPHVGAHQALNASAAVAAGLVAGVPLD 302

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
                L    +   R E     S    +   Y    +S    L  +  I   R I V G 
Sbjct: 303 TAAAMLATASLSRWRMEPRDLASGAILLNDSYNANPDSTRAALDALAAIEGRRHIAVLGE 362

Query: 391 GGDRDQGKRPIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446
             +            G+ A   AD+ +            K    I  G     +   +  
Sbjct: 363 MLELGDDSEVWHRAVGEYAAARADVVV---------TVGKAALRIAEGAGDRAVALADNG 413

Query: 447 EAIRTAIEMLNKQDVLVV-AGKG 468
            A+      L   DV++V A +G
Sbjct: 414 AAVHWLRNHLAADDVVLVKASRG 436


>gi|74316138|ref|YP_313878.1| UDP-N-acetylmuramate--L-alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
 gi|109892754|sp|Q3SMH2|MURC_THIDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74055633|gb|AAZ96073.1| UDP-N-acetylmuramate--alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 463

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 154/437 (35%), Gaps = 51/437 (11%)

Query: 48  AIVGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           A +G +   GH   P  IA GA+A+V S+A    +          I +V      L+   
Sbjct: 47  AKLGARIHRGH--APSNIA-GADAVVTSTAVQESNPEVVAAREKKIPIVPRALM-LAELM 102

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTP 165
               G      +A+ GT GK++  S V  I   +G+  ++ IG   T +           
Sbjct: 103 RLRQG------IAIAGTHGKTTTTSLVASILGEAGMDPTYVIGGKLTAAGTNARLG---- 152

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                         QG   V+    S     +    +  +    TN+  DH+D +     
Sbjct: 153 --------------QGDFLVAEADESDASFLY----LTPVIAIVTNIDADHMDTYGHDFD 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCA 284
                   F + LP    A++  DDA  +E++ R       + + G+             
Sbjct: 195 RLKTAFVDFCQRLPFYGMAVLCIDDANVREILPRITKP---ITTYGFDPAAQVRAVDTRF 251

Query: 285 IHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            H + + T+  EG  D D     PG   V NAL A  +   +G   A +++ L + H V 
Sbjct: 252 EHGQMRFTVKREGMADLDVTLNQPGLHNVLNALAAIAVATEVGASDAAIVKALAEFHGVG 311

Query: 344 GRFEFVGT----NSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGK 398
            RF+  G     +     +  DY H    +   L   R    G R+++VF          
Sbjct: 312 RRFQRYGEHPTKDGGCYWLIDDYGHHPVEMAATLAAARGAFPGRRLVLVFQPHRYSRTRD 371

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRT 451
                   L   D  ++T+  P  E P          RA  + G    +   N  +   T
Sbjct: 372 CFEDFVKVLSETDALVLTEVYPAGEAPIVAADGRALARAVRVAGKVEPVFVENVADVAAT 431

Query: 452 AIEMLNKQDVLVVAGKG 468
             +++   DV++V G G
Sbjct: 432 VRDLVQADDVVLVMGAG 448


>gi|46204010|ref|ZP_00050625.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 198

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 88/170 (51%), Positives = 106/170 (62%), Gaps = 2/170 (1%)

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D A V   LE L  VPGR E +G  +RGG   VDYAH   +LE +L  +R   SGR++V
Sbjct: 29  ADPAGVFAALESLTGVPGRMERIG-EARGGLCLVDYAHKPEALEHVLTALRPFASGRLVV 87

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG  E G+R 
Sbjct: 88  VFGCGGNRDSGKRPIMGAIAARLADRVIVTDDNPRNEEPASIRAAILAAAPGAEEIGDRA 147

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +AIR  +  L   DVLVVAGKGHET  IV +       D D +R  +  +
Sbjct: 148 QAIREGVRSLKAGDVLVVAGKGHETGQIVGD-RVLPFSDHDTVRAAIAEL 196


>gi|227875252|ref|ZP_03993394.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844157|gb|EEJ54324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
          Length = 480

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 162/473 (34%), Gaps = 35/473 (7%)

Query: 13  ELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           + + ++          +I   V++DSR I+AG +FVA+ G   DGH F+     +G +  
Sbjct: 4   DALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVA 63

Query: 72  VV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----------I 117
           VV        +    +        +L VD+ +  L   A     +              +
Sbjct: 64  VVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSGKLKLV 123

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++     +Q+    G +    G  +                 YL       
Sbjct: 124 IGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYL------- 176

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + + AS  G  ++      L       +G  H++ + +  A    K ++   L
Sbjct: 177 ------VLEMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSL 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    AI+ ADD   + +  R         S    G      KV +  +    T+    
Sbjct: 231 GPT-GVAILNADDPRVEAMSGRTAGRLIYFSSQKATGVRATHLKVDSDSHAS-FTLHTPA 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G   V NAL AA +    G+ +  +   L            +   +    
Sbjct: 289 GKAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVD 348

Query: 358 IYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI- 414
           +  D Y    +S++  L  +    +  R++ V G   +       + G+I    A + I 
Sbjct: 349 LIDDAYNANPDSVKAALDVLSKYAASRRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIP 408

Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +    P +++ E   + + H         +   A R   E++  +D++++ G
Sbjct: 409 VLIGVGPMAKNIELAYSALRHDGEHH-HTLDEKSAGRLLQEVVRPKDLILIKG 460


>gi|197124217|ref|YP_002136168.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp. K]
 gi|220918997|ref|YP_002494301.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|229486422|sp|B4UES2|MURC_ANASK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763735|sp|B8J8E9|MURC_ANAD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196174066|gb|ACG75039.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter sp. K]
 gi|219956851|gb|ACL67235.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 458

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 137/412 (33%), Gaps = 41/412 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            + +V+SSA    +          I V+    + L+      YG      +A+ G+ GK+
Sbjct: 68  VDVVVISSAVKRDNPEVLEARRRKIPVIPRA-EMLAELMRLKYG------VAIAGSHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    +   +GL    +     +++F  + +L                     ++ V
Sbjct: 121 TTTSMAAHLLAHAGLDPTAV-VGGKVNAFGSNAKLGKGD-----------------YMVV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        R   I       TN+  +H+D+ +T  A        F   +P    AI+ 
Sbjct: 163 EADESDGSFLR---IPPTIAIVTNIDPEHLDHWKTPDALRRG-FVDFVNRVPFYGLAILC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFP 305
            D    + ++    +   R ++ G         + +    +  +      +     F   
Sbjct: 219 IDHPTVQSIL---PDVEKRAVTYGESHQADYRAEAIELSGHAVRFDAFRRDEALGRFEVA 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G     NAL    L   +GI   +  E L     V  RF   G  + G  +  DY H 
Sbjct: 276 MVGRHNALNALAVIALGDEMGIPPLVTREALRSFQGVQRRFTVRGEAA-GVTVVDDYGHH 334

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              ++  L+  R     R++ +F                 A + AD+ ++TD     E+P
Sbjct: 335 PAEVKATLQGAREAFKRRVVCLFQPHRYTRTRDLMAEFATAFNDADVLLLTDIYAAGEEP 394

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                   +   I       +    R E  R A E +   D+++  G G  T
Sbjct: 395 IPGATAANLADAIRAWGHRDVTLVPRAELARAARERVRPGDLVLTLGAGDVT 446


>gi|261365114|ref|ZP_05977997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566546|gb|EFC88106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
          Length = 455

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 151/421 (35%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P     + ++ V +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALNLPTPSENKPVSRVVTDSRDIRAGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRDNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L  ++  A+I  +D ++  V+ +  +   +  + G     +H + +       +  + 
Sbjct: 212 QGL-GEDGLALIPCEDEHA--VVFQTTSQDHQQRTFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +
Sbjct: 269 CGNERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLDDVAEGLQGFSNIKGRLN-VKAGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  +++ RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMSAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|167038658|ref|YP_001666236.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320117050|ref|YP_004187209.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857492|gb|ABY95900.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319930141|gb|ADV80826.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 876

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 158/441 (35%), Gaps = 37/441 (8%)

Query: 65  AQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   I  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 ENGAIIEINASPGIRMHHYPSKGKPR-------NVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G   + +G T T   +  D  +          A + L+ + + 
Sbjct: 487 NGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTCLADKNID 543

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241
              +E +  G+ +  L       G  TN+  DH+  D  +T +     K  L  E + ++
Sbjct: 544 AAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA-LVVEAVKED 602

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQV 291
             +++ ADD  +  + +RA                       G  +++K    +    Q+
Sbjct: 603 GYSVLNADDPMTTYLAQRAKGKIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIVIANGQI 662

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRFEFV 349
              V+ ++          + V NAL A      + +   ++ + ++  +         F 
Sbjct: 663 IPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHNPGRFN 722

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I    
Sbjct: 723 LFNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGQG 782

Query: 410 ADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDV 461
            D   + +D + R   P ++   +  G                  EA+R A+      D+
Sbjct: 783 FDFIYIKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEALRAAMYNAEAGDL 842

Query: 462 LVVAGKGHETVHIVTNGEKKM 482
           +VV    +E    +    ++ 
Sbjct: 843 IVVF---YEKYQPIIEVIEEF 860


>gi|289579519|ref|YP_003478146.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9]
 gi|289529232|gb|ADD03584.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9]
          Length = 876

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 148/389 (38%), Gaps = 29/389 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK++V      I +  G   + +G T T   +  D  +          A +
Sbjct: 479 PIISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSART 535

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L+ + +    +E +  G+ +  L       G  TN+  DH+  D  +T +     K  L
Sbjct: 536 CLADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIKTLEDLAFVKS-L 594

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVC 283
             E + ++  +++ ADD  +  + +RA                       G  +++K   
Sbjct: 595 VVEAVKEDGYSVLNADDLMTPYLAQRAKGKVIYFSMYDNNLTVKKHVEKGGIAVYVKDGV 654

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
            +    Q+   V+ ++          + V NAL A      + +   ++ + ++  +   
Sbjct: 655 IVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDT 714

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
                 F   N    R+ VDY H    ++ +++  + + + R+I V G  GDR       
Sbjct: 715 THNPGRFNLFNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILK 774

Query: 402 MGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAI 453
           +G+I  +  D   + +D + R   P ++   +  G                  EA++ A+
Sbjct: 775 VGEICGEGFDFIYIKEDVDLRGRKPGEVAKILEEGAIKGGMDRKKIKIILKETEALKAAM 834

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
                 D++VV    +E    + +  ++ 
Sbjct: 835 YHAEAGDLIVVF---YEKYQPIIDVIEEF 860


>gi|53804641|ref|YP_113756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
 gi|53758402|gb|AAU92693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
          Length = 449

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 146/402 (36%), Gaps = 25/402 (6%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  EL   +    +    E   + VS+D+R I+ G +F A+ G++ D H FI        
Sbjct: 2   NLGELAKHVPGAKLSGDAETSFDGVSTDTRAIRPGSLFFALRGDRFDAHDFIAD------ 55

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
               V    +       I +  P ++V + R+ L   A+    +    ++AV G++GK++
Sbjct: 56  ---AVGGGAAALVVERRIDTPLPQIIVPDGRRALGAAAAAWRAQFDVPLIAVAGSNGKTT 112

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  I   +     ++     +++                      +   +  + + 
Sbjct: 113 VTQMIAAILAAAFGEERRLATRGNLNN----------DVGLPLMLFELKAGHRIAVLELG 162

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +  G   +  +  +      TN  R+H ++  + +A  +    +   L P +  A+  A
Sbjct: 163 MNHPGEIAYLANLARPTVALVTNAQREHQEFMASVEATAHENGSVIAAL-PTDGTAVFPA 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD  +    K A     RV+    +G               +V+I+     +    PL G
Sbjct: 222 DDPCAGIWRKLAGTR--RVIDFARRGTATVSGTFRTSAGFAEVSITTPAGCWQANLPLAG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  V+NAL A    +A G+    +   LE    V GR   + T +    I   Y    +S
Sbjct: 280 EHNVHNALAATAAALAAGVPPEAIRRGLESFRPVAGRGVQLRTRTGARLIDDTYNANPDS 339

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALD 408
           +   +  +      RI+ +   G     G      +G+ A +
Sbjct: 340 VRAAIDVLAGFPQPRILALGDMGEVGVHGPEFHREIGRYARE 381


>gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310]
 gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310]
          Length = 824

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 153/403 (37%), Gaps = 28/403 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       +  +I  + +DSR +      +F A+V ++ +GH +IP+   +G 
Sbjct: 5   IEKVTTLIGARRYGTKNAQIGFILTDSRSLCFPEETLFFALVTDRNNGHHYIPELYQRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS   ++      +      L V +TRK L   A R   +    I+ +TG++GK+ 
Sbjct: 65  RNFVVS---AVPVGYDKLYPEANFLKVVDTRKALQRLAERRRDEFDIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  ++L    +      V      
Sbjct: 122 VKEWLYQLLSPQ--------FYVTRSPRSYNSQIGVPLSVWLMNEQTQ-----VGVFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+      TNLG  H +     +     K+ LF          I  A
Sbjct: 169 ISKPGEMNALRDIIQPTIAVLTNLGDAHQENFGLIEDKCREKLILF----HDAETLIYPA 224

Query: 249 DDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD    +V+      G R+  S+  +     +K V        VT   +GK+  +  P  
Sbjct: 225 DDEIISKVITEYDYPGERLYWSMKDKEAPFFVKFVEKKETMTTVTYIYKGKEDWYSLPFI 284

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
            E  V N++V A + + +G+   ++ + +++L  V  R E V     G  +  D Y    
Sbjct: 285 DEASVVNSIVCAIVSLHLGVTPDVLDQRMQQLEPVAMRLE-VKEGQHGCTLINDSYNSDI 343

Query: 367 NSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           NSL++ L  +            +V        +    +  +++
Sbjct: 344 NSLDIALDFMNRRPDHQGRSRTLVLSDIDQSGREASELYREVS 386


>gi|255994795|ref|ZP_05427930.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
 gi|255993508|gb|EEU03597.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
          Length = 464

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 159/453 (35%), Gaps = 60/453 (13%)

Query: 61  PQAIAQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTR--------KFLSLFA 106
            + I+ GA   +      V     L  ++A I  + P L+   +         + L +  
Sbjct: 46  DKLISMGARVALGHMAKNVKEDIDLVIYTAAIADDNPELLKAKSLGIKLLTRAEALGMLM 105

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           S          +A++GT GK++  S V  I   +      I     +S    + ++   S
Sbjct: 106 SEYN-----TSIAISGTHGKTTTTSMVSLILNNA-KKDPTILVGGNLSDINGNLKIGK-S 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
             ++ +A  Y+ S                      ++       N+  DH+DY    +  
Sbjct: 159 EYFVTEACEYMDSF-------------------LNLRPKVELILNIDSDHLDYFDDIEHI 199

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAI 285
             +  R F EL+PK+   I Y  + + K  +K   N    V++ G+  G     + +   
Sbjct: 200 AKS-FRAFAELVPKDGLVIGYDANPFVKAALKNVSN----VVTFGFSRGSDYVAEDIEFD 254

Query: 286 HNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           H          G++   +    +PGE  + NAL AA     +G+D + +   L +   + 
Sbjct: 255 HQGLPSFKICNGENVVANVKLKIPGEHNIQNALAAAACTHTLGVDGSDIENTLNEFSGIN 314

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RF+ VG      ++  DYAH    +E  L   + +   R+  +F               
Sbjct: 315 RRFDIVGMIGGSVKLVDDYAHHPTEIEATLDAAKKMKHNRLWCLFQPHTYTRTKALFSDF 374

Query: 404 KIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEM 455
             AL  ADI ++ +     E        + I  +I    P        +  +      E 
Sbjct: 375 APALSKADIIVMNEIYAAREININKLSAKSIVEDIKKRFPEKEVYFFEDMEDMAGFVYEN 434

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           L   D+++  G G     I   GE  M  D ++
Sbjct: 435 LKINDLVITMGAGD----IFKAGELLMEYDREL 463


>gi|307298500|ref|ZP_07578303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915665|gb|EFN46049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 441

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 156/442 (35%), Gaps = 43/442 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +   +  DSR + AG +F+ + G K DG+ F+ +A+++GA  +    A+         
Sbjct: 13  QTEDRNIVIDSRKVSAGDVFIGLKGEKVDGNDFVGEALSKGASLVFSDKAFD-------- 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +  +L VD+T + L   A  +  K    N + +TG++GK++          + G    
Sbjct: 65  --DQRVLRVDDTNEILIEAAKSILSKSKLSNRIGITGSNGKTTTKEISSFFLSKLGRVFK 122

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +T              P+ L +    L S          S+ G  +  +  ++  
Sbjct: 123 TAGNLNT----------EIGLPLSLLENRRELFSAQYGVFEFGTSTKGDIEKLVGIVQPD 172

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+   +        K+ +F+    + S A++   D     + + +     
Sbjct: 173 IAVLLNVGSAHVGNFKDIDELLQEKLSIFKS--KRLSRAVLGGCDE---RLREFSKGLPV 227

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            VL  G +     +           +    +G  F  L  +    Q+ +   A  +   +
Sbjct: 228 EVLLFGKEDVDFSIVDFAYDKGDTMLHFFCDGDRFVRLRGIWSYGQLLDLGAAYLVARLV 287

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
           G++   V  +  KL        F  +  +G  +  D Y  +  S E  + +I  + S R 
Sbjct: 288 GVEEPSVFLNDYKLPFSD---RFTVSILKGITVISDFYNSSLESWESAILSIEKLRSSRK 344

Query: 385 IVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           I V       G  ++     +G++     +  + T D         I A   +  P  + 
Sbjct: 345 IAVAGSILEQGREEKRTHERLGELLSKFDETVLFTRD-------MAINAASKNVKPALV- 396

Query: 442 KGNRIEAIRT-AIEMLNKQDVL 462
             +  E I       +   D++
Sbjct: 397 -SDSEEEIAAWLHRNVRSGDLV 417


>gi|332527091|ref|ZP_08403171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111522|gb|EGJ11504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
          Length = 448

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 134/372 (36%), Gaps = 26/372 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              V +D+R +Q G +FVA+ G + DGH F+  A   GA A +     S           
Sbjct: 25  FARVHTDTRTLQPGDLFVALRGERFDGHEFLASAREAGAVAAIAEHGLS---------DA 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +    L   A+    +    ++AVTG++GK++V   V  I + +   +     
Sbjct: 76  LPGLQVPDALAALQQLAAGWRARFTLPLVAVTGSNGKTTVTQMVAAILRAAHGDAAF--- 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +T  +      +            + +   G+ H        G         +      
Sbjct: 133 -ATRGNLNNHIGVPLTLLGLEPAHAAGVVELGMNHP-------GEIAELAAIARPTIALV 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A      +    +LP +  A+  ADD Y+    + A     R ++
Sbjct: 185 NNAQREHQEFMATVEAVARENGQAIA-MLPPDGVAVFPADDDYTPLWRELAGAR--RTIT 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               G      +     ++ +V ++           + G   V NAL AA   +A G+  
Sbjct: 242 FALDGAADLTARATWQGDRWRVEMATPAGPLVTTLAVAGRHNVKNALAAAACALAAGVAP 301

Query: 330 ALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           A +   L     V GR +   + T      +  D Y    +S    +  +  +   R +V
Sbjct: 302 AAIAAGLTAFQPVAGRSQAARLATAHGEITLVDDSYNANPDSALAAVAVLAALPGPRWLV 361

Query: 387 VFGCGGDRDQGK 398
           +   G   ++G 
Sbjct: 362 LGDMGEVGERGP 373


>gi|58699992|ref|ZP_00374557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533489|gb|EAL57923.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 218

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 131/225 (58%), Gaps = 13/225 (5%)

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G +   I+  +    HN Q +T+ ++ + ++  FP+ G+FQ YN L A G+    G+
Sbjct: 1   MTYGKKA-LIYFIRANINHNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGIS---GL 56

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   +   +EKL   PGR E V         +VDYAHT ++L+  L +++   + +II+V
Sbjct: 57  NYREIC--VEKLVSPPGRMEKVK-----PFAFVDYAHTPSALKQALLSLKWHINKKIILV 109

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGG+RDQ KR  MGKIA   AD  I+TDDN R EDP KIR +I+   P  +E G R E
Sbjct: 110 FGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRRE 169

Query: 448 AIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           AI   +++  N+  +L+VAGKG+E   I+ N   +   D ++I+ 
Sbjct: 170 AIEKGVDIAYNEGMILLVAGKGNEKFQIIGNQTFE-FSDVEVIKN 213


>gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis BS107]
          Length = 470

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 141/392 (35%), Gaps = 34/392 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +S D+R I AG +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWRVDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+VD+ +  L         +    ++AVTG+ GK+S    + ++    G +   
Sbjct: 73  GDDAPLLLVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAA 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
           +               +  +   +   L+ +       V     +H G         +  
Sbjct: 133 V--------------ASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++     +     K  + + L P    A++ AD A +  +   A     
Sbjct: 179 VAMVTTVAPVHLEAFDGIEGIAAEKAAIIDGLEP-GGVAVLNADIAEAPILQSVAERVTH 237

Query: 266 RVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAG 320
            V   G          HL       ++    +++   +         G     NAL A  
Sbjct: 238 DVQWFGTGTGPIAPTYHLTATTLRGDETLALVTLPNAQTHRLHIQSLGAHFAMNALGALA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN---SRGGRIYVDYAHTSNSLEMILKNIR 377
              A+ +D A  ++ L     V GR      +    +G  + +D ++ +N   +      
Sbjct: 298 CLAALDLDLAKAVQSLSLWSPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAV 357

Query: 378 TI---TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                 +GR I   G   +    ++ +   +A
Sbjct: 358 LAATPCAGRRIAYLGDMKELGPQEQRLHSDLA 389


>gi|167039242|ref|YP_001662227.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter sp.
           X514]
 gi|300913882|ref|ZP_07131199.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307725433|ref|YP_003905184.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
 gi|166853482|gb|ABY91891.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter sp. X514]
 gi|300890567|gb|EFK85712.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307582494|gb|ADN55893.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
          Length = 464

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 140/428 (32%), Gaps = 47/428 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V ++A    +          I  +D     L L   +         +AV G+ GK
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTIDRA-TLLGLIMKKYKYG-----IAVAGSHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++  S +  I    G     +  G    I      N     S  ++ +A  Y  S    +
Sbjct: 121 TTTTSLISVILDGMGFDPTVLVGGEVDVIGG----NVKVGNSEYFVTEACEYTDSFLKFY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FD 301
           +   DDA +  V+         +++ G         K  +  +K      V  K+    +
Sbjct: 217 VACKDDANTMYVVN---GLNKNIVTYGIYQDSDWKAKSISFDDKGCAIFDVYYKEEYMGN 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  D
Sbjct: 274 FKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEVKGI-VDGITIVDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++  L+  +     RII +F                 + D AD  I+ D    
Sbjct: 333 YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAESFDNADKIIIADIYAA 392

Query: 422 SEDPEKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVH 473
            E    I +       I       +   +    +    +     D+++  G G+  E   
Sbjct: 393 REKDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVLTVGAGNIYEVGE 452

Query: 474 IVTNGEKK 481
           +   G KK
Sbjct: 453 MFLKGHKK 460


>gi|307700756|ref|ZP_07637781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
 gi|307613751|gb|EFN92995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
          Length = 483

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 162/473 (34%), Gaps = 35/473 (7%)

Query: 13  ELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           + + ++          +I   V++DSR I+AG +FVA+ G   DGH F+     +G +  
Sbjct: 7   DALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVA 66

Query: 72  VV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----------I 117
           VV        +    +        +L VD+ +  L   A     +              +
Sbjct: 67  VVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSGKLKLV 126

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++     +Q+    G +    G  +                 YL       
Sbjct: 127 IGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYL------- 179

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + + AS  G  ++      L       +G  H++ + +  A    K ++   L
Sbjct: 180 ------VLEMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSL 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    AI+ ADD   + +  R         S    G      KV +  +    T+    
Sbjct: 234 GP-TGVAILNADDPRVEAMSGRTAGRLIYFSSQKATGVRATHLKVDSDSHAS-FTLHTPA 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G   V NAL AA +    G+ +  +   L            +   +    
Sbjct: 292 GKAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVD 351

Query: 358 IYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI- 414
           +  D Y    +S++  L  +    +  R++ V G   +       + G+I    A + I 
Sbjct: 352 LIDDAYNANPDSVKAALDVLSKYAASRRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIP 411

Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +    P +++ E   + + H         +   A R   E++  +D++++ G
Sbjct: 412 VLIGVGPMAKNIELAYSALRHDGEHH-HTLDEKSAGRLLQEVVRPKDLILIKG 463


>gi|297559869|ref|YP_003678843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844317|gb|ADH66337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 482

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 102/483 (21%), Positives = 158/483 (32%), Gaps = 45/483 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L      E I Q +I      E  ++  V  DSR    G +FVA+ G + DGH F   A+
Sbjct: 4   LTLDRIAE-ITQTAIGGSARPEAVVDGPVVIDSRQAVPGALFVALGGERVDGHDFAASAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENILAVTGT 123
           A GA A +VS         A       +  +    R      +    G     ++AVTG+
Sbjct: 63  ADGAAAALVSRPVDAPHLLAEGGDEGVVAALTRLARHVARELSDPRRGAERAEVVAVTGS 122

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++    + Q+  R G +    G  +                 YL    +        
Sbjct: 123 SGKTTTKDLIAQVVARMGPTVAPAGSFNNEIGHPLTVLRADTGTRYLVLEAA-------- 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--- 240
                A   G   H         G   N+G  H+     + A   AK  L E L P    
Sbjct: 175 -----ARGIGHIAHLCGVAPPRIGVVLNVGSAHMGEFGDRDAIAKAKGELVEALPPGAAD 229

Query: 241 ---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++ ADD     +  R   A      +G          V         T+ + G
Sbjct: 230 RGAGGVAVLNADDPRVNAMAARTR-ARVVTYGLGEDATVRATDVVMRETGAPSFTLHLAG 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +       L G  QV+NAL AA +   +G+    + E L     V      V  ++    
Sbjct: 289 RTARVELALVGAHQVHNALAAAAVADELGMGVDEIAEALGAATPVSRWRMEVTEHAGATL 348

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQG---KRPIMGKIALDL--AD 411
           +   Y     S+   L  +  +    R I V     +  +G   +   +G++A     A 
Sbjct: 349 VNDAYNANPESMRAALTTLGALARDRRSIAVLAHMAELGEGGGVEHERIGELAARTGVAH 408

Query: 412 IAIVTDDNPRSEDPEKI--------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + +V       E  E I        R  +  G    +   +  EA       +   DV++
Sbjct: 409 LVVV------GEAAEGIAVGAEGAARQGLWQG--ECVRVADVHEAAAAVRARMRTGDVVI 460

Query: 464 VAG 466
           V G
Sbjct: 461 VKG 463


>gi|290969172|ref|ZP_06560697.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780678|gb|EFD93281.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 464

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 140/438 (31%), Gaps = 46/438 (10%)

Query: 64  IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPEN 116
             QGA   +     +L D      S  I  +         R    L    + ++      
Sbjct: 51  ARQGARICIGQRPENLADAETVIVSTAIHPDNAEWQAARERHLPILHRSDALVHIMSWGK 110

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV G  GK++ +S + Q+                I        +      YL    + 
Sbjct: 111 AIAVAGAHGKTTTSSMLGQVF---------------IEGRLHPTIVIGGEVDYLHSNSTL 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +   V   + E+    L +H            TN+  DH+D++ +      A  +  + 
Sbjct: 156 GTGPYVIAEADESDGTFLKEH------PAIAVVTNIDADHMDHYGSMAHVIAAFKQFIQR 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L P++  A++  D+ + + +  +        +S G+     +  K       +       
Sbjct: 210 LDPQDGMAVLCFDNEHIRRLASQVGRTY---ISYGFAEDAEYTAKNLYYKEGKHYFDVYR 266

Query: 297 GKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         +PG   V NAL    + +  G+  A +   L + H    RF+  G    
Sbjct: 267 RQVLLGTVCLQVPGRHNVLNALATIAVSLHCGLPFAEIAAALCRFHGAKRRFQTKGYVGT 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             R+  DYAH    ++  L     + + R++ +F                 A   ADI +
Sbjct: 327 -IRVVDDYAHHPTEIKATLAAAGDMGTHRVVCLFQPHRYSRTQLLLEQFGTAFSNADILV 385

Query: 415 VTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGK 467
           VTD     EDP        I  +I            R E I     +     D+++  G 
Sbjct: 386 VTDIYGADEDPVPGVTGRLIVDKIKEKTGKSAVYIPRKEDILPFLQKEARPHDLILTMGA 445

Query: 468 GH-----ETVHIVTNGEK 480
           G      E    +  GE+
Sbjct: 446 GDIYRIGEAYITMAKGER 463


>gi|221065134|ref|ZP_03541239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
 gi|220710157|gb|EED65525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
          Length = 475

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 136/387 (35%), Gaps = 22/387 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  V +D+R +Q G +FVA+ G + D H F+             + A +        
Sbjct: 25  QLELARVHTDTRTLQDGDLFVALKGERFDAHDFL--------SQAQAAGAVAAVASHGLE 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +    + V +T   L   A     +    ++AVTG++GK++V   +  + +    +  +
Sbjct: 77  TAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGKTTVTQMIASVLRAHVGAQGE 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +T  +F     +           L    +  +  + +  +  G         +   
Sbjct: 137 A-ALATRGNFNNSIGMPLN-------LLRMTGAHRIAVLEMGMNHPGEIAELAAIGQPTV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +    LP++  AI  A D Y+    + A    C 
Sbjct: 189 ALVNNAQREHQEFMGTVEAVARENGSVL-GFLPRDGVAIFPAGDTYTPLWTELAAGRSCL 247

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +      G  +    V          ++           + G   V NAL AA    A G
Sbjct: 248 MFGEAVAGAQVFASDVVWADGAWSFALNTPQGVAAVQLHIAGRHNVRNALAAAACAHAAG 307

Query: 327 IDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           +  A + + L     V GR     V  N +G  +  D Y    +S+   +  +  + + +
Sbjct: 308 VSLAAIAKGLSGFEPVTGRSRALAVQVNGQGVTVVDDSYNANPDSVAAAIAVLAELPAPQ 367

Query: 384 IIVVFGCGGDRDQGK--RPIMGKIALD 408
           ++V+   G   D G       G +A  
Sbjct: 368 LLVLGDMGEVGDNGPQFHAEAGALARQ 394


>gi|325676973|ref|ZP_08156645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552273|gb|EGD21963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
          Length = 506

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 152/500 (30%), Gaps = 66/500 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     ++   +        +    ++  V  DSR I +G +F+A+ G + DGH     
Sbjct: 1   MIPMTLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITSGGLFLALPGARVDGHDHAAG 60

Query: 63  AIAQ-----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFA 106
           A+A            G  AIVV    +  + +  +  +       +         L   A
Sbjct: 61  AVAAGAVAVLAARPVGVPAIVVEPLGASGNGALALEHDR------DGSGAAVLAALGKLA 114

Query: 107 SRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                +        ++ VTG+SGK+S    +  +    G      G  +           
Sbjct: 115 RASVDRLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALR 174

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 +L              + + A   G      +      G   N+G  H+    +
Sbjct: 175 ADADTRFL-------------VLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGS 221

Query: 223 QQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHL 279
           ++A    K  L   L        A++ ADD     V   A     RV+ VG  G   +  
Sbjct: 222 REAIAETKGELPASLPSAADGGVAVLNADDPL---VAAMADRTEARVVMVGLSGNADVRA 278

Query: 280 KKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             V      +   T++           + GE  V NAL AA + +  G     +   L  
Sbjct: 279 TDVRLDDQARASFTLTCAAGAVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGG 338

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI------TSGRIIVVFGCG 391
              V  R   V   S G  +  D Y    +S+   +K + ++       + R   V G  
Sbjct: 339 AAPVSARRMEVRDRSDGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEM 398

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGN 444
            +           I    A    VT        P +    +  G           I   +
Sbjct: 399 AELGPESVVEHDAI-GRFAVRLDVTKLILVG--PGRPVRAMYQGAVMEGSWGDEAIHVPD 455

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
              AI    + L   D+++V
Sbjct: 456 GASAIALLEQELRAGDLVLV 475


>gi|307265084|ref|ZP_07546644.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919882|gb|EFN50096.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 464

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 144/430 (33%), Gaps = 51/430 (11%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N PI+   +    L L   +         +AV+G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPII---DRATLLGLIMKKYKYG-----IAVSGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           GK++  S +  I    G     +  G    +      N     S  ++ +A  Y  S   
Sbjct: 119 GKTTTTSLISVILDGMGFDPTVLVGGEVDVLGG----NVRVGNSEYFVTEACEYTDSFLK 174

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +                          N+  DH+DY +       +  R F  L+P + 
Sbjct: 175 FY-------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDG 214

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--- 299
             +   DDA +  V+         +++ G         K  +  +K      V  K+   
Sbjct: 215 FVVACKDDANTMYVVN---GLNKNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYM 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +F   +PG+  +YNAL A  +   +GID      +L +      RFE  G    G  I 
Sbjct: 272 GNFKLSIPGKHNIYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIV 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAH    ++  L+  +     RII +F                 + D AD  I+ D  
Sbjct: 331 DDYAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAESFDNADKIIIADIY 390

Query: 420 PRSEDPEKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ET 471
              E    I +       I       +   +    +    +     D+++  G G+  E 
Sbjct: 391 AAREKDTGIVSSKDLVELISQRGKDALYLKDFDSIVEYLNKNAKAGDLVLTVGAGNIYEV 450

Query: 472 VHIVTNGEKK 481
             +   G +K
Sbjct: 451 GEMFLKGHEK 460


>gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 471

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 144/405 (35%), Gaps = 24/405 (5%)

Query: 10  DFPELINQLS-IFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +  ++ + L  +  +   +  + + V +DSR ++ G +F  I G + DGH F  + + +G
Sbjct: 4   NLEQIRDALGAVGTLGGADMTVPSGVQTDSRCVRDGELFFCISGERFDGHTFAAEVLEKG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A+V        D     R + P+L+V +T   L   A          +  +TGT+GK+
Sbjct: 64  ACAVVAERPPFSMD-EMQDRQDRPVLIVPDTVAALGRLALHHRMGASAVVTGITGTAGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   +  +              S   + A+++             L+    +    +  
Sbjct: 123 TVKELLAHVL-------------SVRGATARNHLNRNNQIGLPLSMLAATGDERFWVMEA 169

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S           ++       N+G+ H+     +    + K RL +  + +    ++ 
Sbjct: 170 GISQAADMDELGSVLRPDLAVVLNVGQGHLSGLGDK-GVAHYKARLLKH-IARGGVGLVS 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           AD        ++         +V     +       A   +    + +E ++F+   P  
Sbjct: 228 ADYPDLLAEARKNCGELRLFSAVDPAVPYFCEYAGPAGEGRGLYRVRLESREFETEAPFR 287

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G +   N +  A     +G+ SA + E L    +   RF        G  + +D  + +N
Sbjct: 288 GAYGAENVIAVAAAAHILGLTSAEIAEGLRTAELPQQRFN---CRRYGRWLVIDDTYNAN 344

Query: 368 SLEM--ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            L    ++++      G   VVF  G   + G+        L  A
Sbjct: 345 PLSAGRMVESTAENACGE-PVVFVMGEMLELGEAAAQAHTELGRA 388


>gi|326390852|ref|ZP_08212404.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993111|gb|EGD51551.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 464

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/428 (19%), Positives = 141/428 (32%), Gaps = 47/428 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V ++A    +          I  +D     L L   +         +AV G+ GK
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTIDRA-TLLGLIMKKYKYG-----IAVAGSHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++  S +  I    G     +  G    I      N     S  +L +A  Y  S    +
Sbjct: 121 TTTTSLISVILDGMGFDPTVLVGGEVDVIGG----NVRVGNSEYFLTEACEYTDSFLKFY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FD 301
           +   DDA +  V+   +     +++ G         K  +  +K      V  K+    +
Sbjct: 217 VACKDDANTMYVVNGLNKN---IVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGN 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  D
Sbjct: 274 FKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++  L+  +     RII +F                 + D AD  I+ D    
Sbjct: 333 YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAGSFDNADKIIIADIYAA 392

Query: 422 SEDPEKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVH 473
            E    I +       I       +   +    +    +     D+++  G G+  E   
Sbjct: 393 REKDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKTGDLVLTVGAGNIYEVGE 452

Query: 474 IVTNGEKK 481
           +   G KK
Sbjct: 453 MFLKGHKK 460


>gi|260434510|ref|ZP_05788480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
 gi|260412384|gb|EEX05680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
          Length = 459

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 149/452 (32%), Gaps = 36/452 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +  V +DSR +QAG  FV +VG + DGH F+ +      +A VVS ++     +  
Sbjct: 22  PDALVGRVCTDSRQLQAGDFFVPLVGERFDGHHFLDKLTEHKVQAAVVSRSW-----TEP 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             S      VD+T       A        + ++AVTG++GK++    ++      G    
Sbjct: 77  FPSGLLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAGKTTTRELIRAALAPMGAIQA 136

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                                       L   ++     + +     G  +      +  
Sbjct: 137 S-------------EANNNNDVGVPLTVLGATAADAALVIEMGMRGSGEIERLSRCTEPD 183

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------- 258
               TN+G  HI    +++A   AK  +   L PK +  I   D      +         
Sbjct: 184 LAVITNIGTAHIGCLGSREAIAAAKCEITAGLHPKGTVVIPAGDPLLESALAAVWSGRVL 243

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R   A   V+             +    N  Q+ I  +         L G     N L+A
Sbjct: 244 RVRLADDPVVESDLINADWIGADLVGDINGDQLLIDAD----RLPLQLEGRHNARNLLLA 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-LEMILKNIR 377
             +   +G+    +     ++ V  GR   +    +GG   +D  + ++    +    + 
Sbjct: 300 VAVADQLGVSRKQLQGM--QVTVPGGRNRRL---QQGGLTLLDETYNASPEAVLAALELL 354

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               GR   V G   +  +    +  ++A     + +            K  AE+   +P
Sbjct: 355 AAQPGRRFAVLGTMLELGERSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAEVAAPLP 414

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                 N  +A       LN  DVL++ A +G
Sbjct: 415 HLQLVSNPEDAAVPLAAWLNSGDVLLLKASRG 446


>gi|325980956|ref|YP_004293358.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
 gi|325530475|gb|ADZ25196.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
          Length = 475

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 147/431 (34%), Gaps = 54/431 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           ++  A  Q  GA  +V S+A    +       N  I VV        L   R        
Sbjct: 54  YVGHASEQVTGANVVVTSTAVKSDNPEVVAAKNRNIPVVPRALMLAELLRLRTG------ 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ G  GK++  S +  I   +      + PT  I    +                  
Sbjct: 108 -IAIAGAHGKTTTTSLIASILAAA-----DMDPTFVIGGKLEAAGCHAKLGS-------- 153

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G   V     S     +    ++ +    TN+  DH++ +             F +
Sbjct: 154 ----GEFIVVEADESDASFLY----LQPVLAVVTNIDADHMETYGYDFNKLKQTFVEFLQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT--I 293
            LP    A++  DDA  +EVM     +   + + G           +   +++ + T  I
Sbjct: 206 HLPFYGMAVVCIDDANIREVMPAITKS---ITTYGLSEDAQVRATNIQHSNHQMKFTAVI 262

Query: 294 SVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            V G  +  D    LPG   + NAL A  +   I +  A ++  L +   V  RF+  G 
Sbjct: 263 GVNGSARRLDITLNLPGLHNIQNALAAIAVANEICVPDAAIVRALAEFKGVERRFQQFGE 322

Query: 352 NS----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
                 +   +  DY H    +E  +K  R    GR +VV F                  
Sbjct: 323 IRLSMQKSFTLIDDYGHHPAEMEATMKAARGAFPGRRLVVAFQPHRYTRTRDVFEDFTRV 382

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR---------TAIEMLN 457
           L  AD+ ++T+  P  EDP  I A     +   I    ++E I            ++++ 
Sbjct: 383 LSQADVLLLTEVYPAGEDP--IVAADSKSLARSIRVLGKVEPIYIEDIDDLSIAILDVVQ 440

Query: 458 KQDVLVVAGKG 468
             D+++V G G
Sbjct: 441 DNDIVLVMGAG 451


>gi|85373187|ref|YP_457249.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter litoralis
           HTCC2594]
 gi|122545203|sp|Q2NCY9|MURC_ERYLH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84786270|gb|ABC62452.1| UDP-N-acetylmuramate-alanine ligase [Erythrobacter litoralis
           HTCC2594]
          Length = 474

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/433 (21%), Positives = 143/433 (33%), Gaps = 54/433 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ I   A  +V S+A    +          I VV        L          +
Sbjct: 59  GH--APENIEN-AAVVVTSTAVKRTNPEVASALENRIPVVRRAEMLAELMRL-------K 108

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + +AV GT GK++  S +  +    G     +     I  +  + RL     +       
Sbjct: 109 STVAVAGTHGKTTTTSMIAALLD-CGDIDPTVINGGIIEQYGSNARLGDSEWM------- 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RLDG        TN+  +H+D++        A    F 
Sbjct: 161 ----------VVEADESDGSFLRLDGT---IAVVTNIDPEHLDHYGDFDGVKRA-FLDFI 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTIS 294
             +P    AI+  D    + V+ +  +          Q     +  +     N   V + 
Sbjct: 207 HNVPFYGAAILCIDHPEVQAVIGQVRDRRVMTYGFSLQADICGVNIRPEGGGNVFDVIVR 266

Query: 295 VEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             G++     D   P+PG   V NAL A  + I +G    ++    E    V  RF  VG
Sbjct: 267 QRGEEDRRIADVHLPMPGRHNVQNALAAIAVSIEMGCSDEVIQRGFESFGGVRRRFTKVG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-----ITSGRIIVVFGCGGDRDQGKRPIMGKI 405
               G  I  DY H    +  +L   +         GR+I V                + 
Sbjct: 327 EVG-GATIIDDYGHHPVEIAAVLGAAQEAVSSSDKGGRVIAVAQPHRYTRLRDLMDDFQS 385

Query: 406 ALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA--------IRTAIEML 456
             + AD   VT      EDP + I AE +  + G   +G+R  A         RT    +
Sbjct: 386 CFNDADAVYVTPVYEAGEDPIDGIDAEAL--VAGLKSRGHRHAATIADPQALARTLAGEI 443

Query: 457 NKQDVLVVAGKGH 469
            + DV+V  G G 
Sbjct: 444 EEGDVVVCLGAGD 456


>gi|300788096|ref|YP_003768387.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
 gi|299797610|gb|ADJ47985.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
          Length = 465

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/420 (22%), Positives = 152/420 (36%), Gaps = 57/420 (13%)

Query: 69  EAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            A+VVS+A      + +A   +  P+L            A  + G     +  + GT GK
Sbjct: 73  SAVVVSTAIKETNPELAAARAAGIPVL------HRAQALAGLMEGH---RVACIAGTHGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S +    Q                    D        +  + A ++    GV    
Sbjct: 124 TSTTSMLTVALQHC----------------RLDPSFAIGGDLNESGANAHHGEGGVFVAE 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + S      +            TN+  DH+D+H T +AY          ++P     I+
Sbjct: 168 ADESDGSFLTY-----SPSVAVVTNVEPDHLDHHGTAEAYTKVFTEFVSRIVP-GGLLIV 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             DD  + ++ ++A + G RV   G          + +     +   V + ++G++    
Sbjct: 222 CGDDPAADDLGRQAEDLGVRVRRYGRTATGPGDARILEYVPAPDGGVVRLVLDGEEVSVR 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PGE    NA+ A    I +G     +++ L     V  RFEF G      R+Y DYA
Sbjct: 282 VAVPGEHMALNAIAALLAGIELGAPVPGLVDGLAAFGGVRRRFEFKGRAGD-VRVYDDYA 340

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +   L+ +RT    GR+IVVF            +    AL LAD  +V D     
Sbjct: 341 HHPTEVAAQLRAVRTAAGSGRVIVVFQPHLYSRTKTFSVEFAEALSLADEVVVLDVYGAR 400

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRI-EAIRT----------AIEMLNKQDVLVVAGKGHET 471
           E+PE        GI G +   +R+  A+            A  +    D++V  G G  T
Sbjct: 401 EEPE-------PGITGAL-IADRVTAAVHYEPAFDVAAPLAAGLAKPGDLVVTMGAGDVT 452


>gi|88802248|ref|ZP_01117775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
 gi|88781106|gb|EAR12284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
          Length = 418

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 126/372 (33%), Gaps = 39/372 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +D+R I+   +F A+ G   +G+ F  +A+AQGA   ++  A                ++
Sbjct: 18  TDTRSIRKNTVFFALKGANFNGNAFAAEALAQGASLSIIDDAAYFTGPKT--------IL 69

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           VDN  + L   A     +    +LA+TG++GK++    +  +  +   ++   G      
Sbjct: 70  VDNVLETLQALARYHRKQLKIPVLALTGSNGKTTTKELISAVLSKKYRTTATHG------ 123

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
               +       P+ L   LS      +  V + A+                G  TN G+
Sbjct: 124 ----NLNNHIGVPLTL---LSMTPKTEIGIVEMGANHQKEIAFLCSLAAPDYGYITNFGK 176

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-VMKRAHNAGCRVLSVGYQ 273
            H++     +     K  L+  L   +  A I   DA  KE     AH      ++    
Sbjct: 177 AHLEGFGGMEGVVMGKSELYTFLHTHQKTAFINPKDALQKEKTTDIAHVYFPESITFKSA 236

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             F                + V  +D +    L G++   N   A  + +   I    + 
Sbjct: 237 APF----------------VKVAFEDLEIQSNLVGDYNYANIAAAIAIGLYFKIPKQEIK 280

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             + +      R + + T +    +   Y    +S++  + N   + +    V+ G   +
Sbjct: 281 TAISEYVPSNNRSQIIHT-ANNQLLLDAYNANPSSMKAAVSNFANLKAAFKTVILGDMFE 339

Query: 394 RDQGKRPIMGKI 405
                     ++
Sbjct: 340 LGTTAAEEHQEM 351


>gi|302344213|ref|YP_003808742.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
 gi|301640826|gb|ADK86148.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
          Length = 458

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/401 (21%), Positives = 141/401 (35%), Gaps = 46/401 (11%)

Query: 80  QDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            + +A I    P++     R   L+      YG      +AV G  GK++  S V  +  
Sbjct: 79  PEVAAAIELQIPVI----PRAEMLAELMRLKYG------VAVAGAHGKTTCTSLVATLLA 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             GL    +     + +   +  L                      +  EA       +R
Sbjct: 129 AGGLDPTVV-VGGKLGALGTNAVLGRGE-----------------FLVAEADESDGSFNR 170

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L     +    TN+ R+H+D++ + QA   A +  F   +P    AII  DD     ++ 
Sbjct: 171 LS---PVVVVVTNIDREHMDHYGSDQALDEAFVE-FMNKVPFYGAAIICLDDPRVAALIP 226

Query: 259 RAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNAL 316
           R      RV++ G  G      ++V     +   ++  +G++      PLPG   V N L
Sbjct: 227 RVRK---RVITYGQSGQADFEAREVSHQGMRTSFSLFAQGQNLGRVQVPLPGRHNVLNTL 283

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+   + +        V  R E  G ++ G  +  DYAH    +   L+  
Sbjct: 284 AALAVAKELGVAMPVAMSACAGFGGVGRRMEQKGQSAAGALVVDDYAHHPTEIRATLQAA 343

Query: 377 RTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DP----EKIR 429
           R      R++V F                 A  +AD  ++ D    SE  DP    EK+ 
Sbjct: 344 RDCWPDKRLVVCFQPHRYSRTRDLFEEFATAFYVADELLLLDIYAASEKKDPAVSAEKLA 403

Query: 430 AEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I  HG       G +  A     +ML   DV    G G 
Sbjct: 404 EAIRAHGHRRVEYVGGQEAARERLEKMLGPDDVFFTMGAGD 444


>gi|108804329|ref|YP_644266.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
 gi|123069100|sp|Q1AVX4|MURC_RUBXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108765572|gb|ABG04454.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 447

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/414 (20%), Positives = 139/414 (33%), Gaps = 50/414 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +V+S+A    +          I V+        + A           +AV GT GK+
Sbjct: 60  AEVVVISTAIPKTNPELLEARRRSIPVIPRAEALARILAEGRG-------IAVAGTHGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +    +  G +     PT+ +     D                           +
Sbjct: 113 TTTSMIAHSLRALGEN-----PTALVGGELNDIGSNVIFGRE----------------DL 151

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +        +  +   A   TN+  DH D++ + +       R    L P E   ++ 
Sbjct: 152 IVAEADESDRSILRLHPQAAVITNIEYDHPDFYASLEEVVETFARFVAGL-PPEGHLVLC 210

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD   + + + A    C V + G  G  +  +    +     +      K  +    + 
Sbjct: 211 ADDPRCRRLAELAP---CPVTTYGLSGGELRAR---VLSPGSYLLFEGARKRGEVSLGVY 264

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N+L AAG+   +G D       L     V  RF+  G  S G R+  DYAH   
Sbjct: 265 GRHNVLNSLAAAGIARWLGHDPLEAARTLGSFGGVRRRFQLKGERS-GVRVVDDYAHHPT 323

Query: 368 SLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +  IL   R      GRII VF         K       A   AD  +VT+     E P
Sbjct: 324 EIMAILDVARATAAPEGRIIAVFQPHRYSRTRKLYREFGRAFGRADAVVVTEVYGAGEMP 383

Query: 426 E-KIRAEIIHGIPGFIEKGNR--------IEAIRTAIEM-LNKQDVLVVAGKGH 469
           +  +  +++  +    E  +R         EA+   + M    +D ++  G G 
Sbjct: 384 QPGVSGKLV--VDAICETSDRPEVYYVPDQEALPEVLRMISGPRDTVITLGAGD 435


>gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
 gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
          Length = 468

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 126/378 (33%), Gaps = 25/378 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR ++ G +FV ++G + D H F  Q +  GA A+V +    L             
Sbjct: 37  IQTDSRLVEKGDLFVCLIGERFDAHDFAGQVMKSGAAALVTNRVLDLP---------IHQ 87

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            VV++TR  L   AS    +    +LAV G++GK++    +  IC+        +     
Sbjct: 88  FVVNDTRLALGALASAWRQQFDLKVLAVVGSNGKTTSKEMLGGICKAQCGDDQVLVTAGN 147

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +++                  L       +  + +  +  G   +    +K      TN 
Sbjct: 148 LNN----------DIGVPQTLLKLRPQHQMAVIEMGMNHPGEIDYLAGLVKPDVVLLTNA 197

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H ++ +T  A  N     F  L      A+    D +      +A + G   L  G 
Sbjct: 198 QREHQEFMKTVLAVANENGSAFTHL-SSNGCAVFPVSDEFDACW--QALSTGKSTLRFG- 253

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    +    +   +  V +       +      GE    NA  AA    A G     +
Sbjct: 254 SGADFEILPPRSDFGQSAVVLRALDAPIELRPNFIGEHNYANAAGAAAAAHAAGCTHEAI 313

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              L     V GR +          I   Y    +S+    K +       ++V+   G 
Sbjct: 314 QAGLNAFQPVNGRLQVALNTPSILLINDSYNANPDSVNAASKVLGQQAGSTLLVLGDMGE 373

Query: 393 --DRDQGKRPIMGKIALD 408
             ++       +G  A  
Sbjct: 374 VGNQSDEYHAEVGSYAKQ 391


>gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 468

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 102/467 (21%), Positives = 174/467 (37%), Gaps = 39/467 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        +      ++ VS+D+R + AG +FVA+ G + D H  +  A A GA A+V
Sbjct: 14  ELAAATGGRWLGAPPAAVDGVSTDTRTLAAGQLFVALKGERFDAHDHLEAAAAAGAAALV 73

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A++    +    +        +T   L   A     +    ++ VTG++GK++    
Sbjct: 74  VSGAWAAAHPAPPRPALAVA----DTLAALGAIARFHRCRFGIPVIGVTGSNGKTTTREM 129

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I    G      G  +                + +   L  L     T V     +H
Sbjct: 130 IAAILATRGPVLKTEGNLNN--------------EVGVPLTLFGLDDAHATAVIEMGMNH 175

Query: 193 GLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +  RL  I +   G  T     H++   T +A  +AK  L+E L P    A++ ADDA
Sbjct: 176 PGEIARLAAIAQPQVGVVTLAAPAHLEGLGTVEAVADAKAELYEGL-PAGGIAVVNADDA 234

Query: 252 YSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-L 306
               ++KR   +G R+L+     G +G  + L+ +       +  + V  ++     P L
Sbjct: 235 ---RMLKRGVASGRRMLTFASGRGRRGDVVVLEVLSQSVEGLRFVLGVGNREVPVHIPGL 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NA  AA   IA+G     + + L  +  V  R       S    +   Y    
Sbjct: 292 VGAHNARNAAAAACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANP 351

Query: 367 NSLEMILKNIRTITSGRIIV-------VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            S+   L+ +R + +            +   G    +  R +  + A   A +A++    
Sbjct: 352 ASMSAALEVLRDLAAAPGARAVAVLGDMLELGSFEAEAHRALGAEAAT--AGVAVLAAFG 409

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           PR+    +             E  +R+ A     E L   DVL+V G
Sbjct: 410 PRARATAEAARAAGLAETFHTEDLDRLVA--FVRERLRPTDVLLVKG 454


>gi|325132962|gb|EGC55639.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M6190]
          Length = 436

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 139/394 (35%), Gaps = 34/394 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ + +DSR I+AG +F A+ G + D H F+                 +        R
Sbjct: 6   KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 53

Query: 88  SNTPI----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +       L VD+T   L   A          +  +TG+ GK++V   +  + +R    
Sbjct: 54  EDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRR---R 110

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLDGI 202
                  +T  +F           I L   L  L+ +     + +  +  G         
Sbjct: 111 FGDDAVLATAGNFNNH--------IGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIA 162

Query: 203 KLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           K  A    N  R H+            AK  +++ L   +  A+I  +DA          
Sbjct: 163 KPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGL-CSDGIALIPQEDANMAVFKTATL 221

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N   R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L
Sbjct: 222 NLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAAL 279

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +A G+    V E L+    + GR   V +  +G  +  D Y    +S++  +  +  + 
Sbjct: 280 ALAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIKGATLIDDTYNANPDSMKAAIDVLARMP 338

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           + RI V+   G   +     +  ++     D  I
Sbjct: 339 APRIFVMGDMGELGEDEAAAMHAEVGAYACDQGI 372


>gi|296129439|ref|YP_003636689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
 gi|296021254|gb|ADG74490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
          Length = 476

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 145/458 (31%), Gaps = 50/458 (10%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   V +DSR ++ G +FVA+ G   DGH F               +A +    +A    
Sbjct: 26  VTGPVVTDSREVEPGGLFVALPGEHVDGHDFAAG----------AVAAGAALVLAARALP 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE----------NILAVTGTSGKSSVASFVQQICQ 138
             P +VV +  + L   A  +  +  +           ++ VTG+ GK++    + Q+C 
Sbjct: 76  GLPCVVVPDVERALGDLARAVLARLRDAATLPGGSGLRVIGVTGSVGKTTTKDVLAQLCG 135

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G +   +   +                 +L              + + AS  G   + 
Sbjct: 136 AAGPTVAPVRSFNNEIGLPLTVLRADEQTRFL-------------VLEMGASGPGHLTYL 182

Query: 199 LDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            D           +G+ H+        A   AK  +   LLP +  A++  DD     V 
Sbjct: 183 TDIAPPDVAVVLVVGQAHLGGFGGGIDAVARAKSEIVAGLLP-DGVAVLNGDDP---RVR 238

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------EGKDFDFLFPLPGEFQ 311
             A  A  R +  G         +   +    + T  +      +    D    L GE  
Sbjct: 239 AMADVAPGRAVLFGAAPDAEVRVEDVRLDALGRATFRLVHVVGEDRHARDVALRLVGEHH 298

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V+NAL AA   + +G+    V   L     +      V   + G  +  D Y    +S+ 
Sbjct: 299 VHNALAAAAASLQVGLTLDEVAAGLTAADALSPHRMHVVDRADGVTVVDDSYNANPDSMR 358

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIR 429
             LK +  I       V   G   + G        A   L     +       E    IR
Sbjct: 359 AALKALAVIAGRERRSVAVLGEMLELGDEHRTAHDAIGRLVVRLNIGLTVVVGEGARAIR 418

Query: 430 AEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               H        +   +   A     + L   DV++V
Sbjct: 419 DGANHEGSWGDEVVLVDDVDTAAAFLAQELRAGDVVLV 456


>gi|302669659|ref|YP_003829619.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
 gi|302394132|gb|ADL33037.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
          Length = 464

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 141/409 (34%), Gaps = 41/409 (10%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASF 132
              +  ++A +  + P  +         L  ++L G+  +     +AV GT GK++  S 
Sbjct: 71  DIDVVVYTAAVHPDNPEFMAAKEANLPMLTRAQLLGQIMKQYKLPVAVAGTHGKTTTTSM 130

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + +I   +        PT +I    +D                Y  ++   + +   S  
Sbjct: 131 LSKILLEA-----DTDPTLSIGGIFKDIGGNIRVGQS-----EYFVTEACEYTNSFLSFF 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                            +N+  DH+D+ +      ++  R F +LLP +   +I  D   
Sbjct: 181 -----------PKISIISNIDADHLDFFKDLDDIRHS-FRKFAQLLPADGTLVINGDIDN 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKD-FDFLFPLPGE 309
            +E+        C +++ G +  F +       + +     T  + G +  D    +PG 
Sbjct: 229 VEEITDSLP---CTIITYGSRDSFDYYPTDITYNEQGNPSFTAHLPGGETLDISLAVPGI 285

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYNAL +  +    GI    ++  L        RFE+ G    G  I  DYAH    +
Sbjct: 286 HNVYNALASIAVANLFGISKDNIVAALSAFGGTSRRFEYKGEIG-GVTIIDDYAHHPTEI 344

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP---- 425
           +  L   +     +I  VF                 AL LAD  ++ D     E      
Sbjct: 345 KATLTAAQNYPHNKIWCVFQPHTYTRTKALLDEFADALSLADHVVLADIYAARETDTLGI 404

Query: 426 --EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               +R +I+        F    N  E  +  ++   K D+L+  G G 
Sbjct: 405 SSRTLRDKIVANGHECNYFPTIENFGEIEKFLLQNCTKGDLLITMGAGD 453


>gi|255020009|ref|ZP_05292082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970538|gb|EET28027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 448

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/469 (19%), Positives = 163/469 (34%), Gaps = 46/469 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+  +     +Q  +  ++I+ V +D+R   +G +FVA+ G + DGH F+  A
Sbjct: 1   MIRYTLREIAQRTGGSLLQGTDPEKEIHGVGTDTRTHLSGRLFVALRGPRFDGHDFVEAA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA A++V                 P ++V +    L + A+    +   ++ AVTG+
Sbjct: 61  RKAGAAAVLVQRPSPG-----------PGVLVADPLAALQVLAAAWRRELGTSLAAVTGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++V   +  + ++SG      G  +                I +   L+ L  +   
Sbjct: 110 CGKTTVKEILAAMLRQSGPCLATRGNLNN--------------HIGVPLTLAELGPEHRH 155

Query: 184 HVSVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            V     +H G         +       N G  HI+   +  A   AK  + E L     
Sbjct: 156 AVVEMGMNHAGEIAVLTRMARPDLALINNAGPAHIENLGSIAAIAAAKGEILEGL-SAHG 214

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFD 301
            A+I  DD Y+    +RA      V       +   ++ +         + +     +  
Sbjct: 215 IAVINGDDEYADYWAERAPG---EVWRFSLDDRPARVRGQWRPQGKGGVLDLRAPQGNVS 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G     N L A    +A+ +    +   +E L   PGR ++      G RI  D
Sbjct: 272 LRIPLSGRHNGANVLAATTAALALNLGLDQIARAVEALTPAPGRLQWREGKG-GSRILDD 330

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S+E  L+ +      R +V+      G D +   + + G       D      
Sbjct: 331 TYNANPASVEAALRVLAEQPGRRYLVLGDMAELGADAELHHQQMGGHARALGIDGVFTLG 390

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              R+              P       R   +   + ML    V++V G
Sbjct: 391 SLSRTTS--------RAFGPAGTHFVEREALVDAVLSMLAPDAVVLVKG 431


>gi|254432056|ref|ZP_05045759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197626509|gb|EDY39068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 428

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 119/370 (32%), Gaps = 27/370 (7%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTR 99
           +F+A+VG + DGH F+ QAI  G+ A+V+   +          +        +  V +T 
Sbjct: 1   MFLALVGERFDGHDFLEQAIQAGSAAVVLQGDHLPPASLQSLMALAGERGCGLWAVPDTV 60

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A+         ++AVTG++GK++    ++ +    G      G  +        
Sbjct: 61  LAYQQLAAGWRRGFAGPVVAVTGSAGKTTTRELIRAVLAPLGSVVASRGNENNDLGVPLT 120

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                         L    +     V +     G  +      +      TN+G  HI  
Sbjct: 121 -------------LLRLTDADRAAVVEMGMRGLGEIERLSRCAQPDVAVITNIGTAHIGR 167

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             +++A   AK  +   L P+    I   D      +      A  R+   G  G+    
Sbjct: 168 LGSREAIAQAKCEITTSLQPQGVVVIPAGDPLLDAALAAVWQGAVLRIALAGDPGEAEAD 227

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      V +           PL G     N ++A  +   +G+    + +    L
Sbjct: 228 WVGQEDPAAGSVVVD----GVAVPLPLEGRHHARNLMLALAVARHLGVGPERLQQLHVAL 283

Query: 340 HVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
                R   VG    G R+    Y  +  ++   L+ + T   GR   V G   +     
Sbjct: 284 PGGRSRRLAVG----GIRLLDETYNASPEAVLASLELLATQAGGRRYAVLGTMLELGDKS 339

Query: 399 RPIMGKIALD 408
             +  ++A  
Sbjct: 340 LALHRRVARR 349


>gi|28199734|ref|NP_780048.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa
           Temecula1]
 gi|182682481|ref|YP_001830641.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M23]
 gi|32129758|sp|Q87AG0|MURC_XYLFT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620437|sp|B2I9B2|MURC_XYLF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28057855|gb|AAO29697.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Temecula1]
 gi|182632591|gb|ACB93367.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M23]
 gi|307578762|gb|ADN62731.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 477

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/422 (20%), Positives = 153/422 (36%), Gaps = 55/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I                L  A +      
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGA 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL     +    TN+  DH++ +    +        F + LP  
Sbjct: 164 GQWLVVEADESDGSFLRL---NPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    E++ +A      V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDDPEVAELVGKARR---HVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---- 355
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            R+  DY H    LE +    R      R++V F          +       L   D  +
Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSSVDALV 397

Query: 415 VTDDNPRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +++  P  E      D + +   I   G    +  G     I    ++L + D+L++ G 
Sbjct: 398 LSEVYPAGEVPIPGADAKALARAIRARGRSEPVVVGQVASLIDVLPDVLQEGDLLLMMGA 457

Query: 468 GH 469
           G 
Sbjct: 458 GD 459


>gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 464

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 147/420 (35%), Gaps = 30/420 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L          +     + P       I+ VS DSR I    +F+ I GN  DGH F+
Sbjct: 1   MRLS---LDTILSVTGGTLVAPTTGYNSYIDGVSIDSRAITTNSLFICISGNITDGHNFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +GA AI+ S      +         P+++V +T   L + A          ++ +
Sbjct: 58  LKAVEEGASAILASHNPFEGEVP------VPVILVPDTLNGLKVLAQAARKMTKAKVIGI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++V   V Q+    G  +      +T    +                L+    +
Sbjct: 112 TGTAGKTTVKELVAQLLTSKGKVAKNYLNFNTQIGMS-------------FSILAAQGDE 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + V  S+    +     +        N+G  H+     +Q     K +L    +  
Sbjct: 159 DFWVMEVGISNPQDMEELGTILTPDIALIINVGPGHLSGL-NKQGVAYHKAQLL-RYMKD 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E   I+  D     + +K   +       +  Q ++         +      + ++    
Sbjct: 217 EGLGIVSLDYPDLVKEVKELRSGSLFFSVLDNQCRYYSKYTGIVENGYGTYRLWLDDDIV 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P  G F + + L +A +   +G+ S  + + L +  +   RF    T+     I  
Sbjct: 277 DVTSPFLGNFGMESVLASATIAHKLGVSSDSIKQQLFQAILPQNRFSCF-THGNWLCIDD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-----DRDQGKRPIMGKIALDLADIAIV 415
            Y     S+  ++++   ++  +  +V+  G      D  + +   +GK         I 
Sbjct: 336 SYNANPLSMNAVIESTYKLSDEKKPLVYVLGEMLELGDSSEAEHEKIGKKLAQTGASIIF 395


>gi|15827430|ref|NP_301693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae TN]
 gi|221229907|ref|YP_002503323.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
 gi|20138886|sp|O69556|MURF_MYCLE RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3080477|emb|CAA18672.1| udp-n-acetylmuramoylalanyl-d-glutamyl
           -2,6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Mycobacterium leprae]
 gi|13092980|emb|CAC31291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae]
 gi|219933014|emb|CAR71005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 517

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/522 (17%), Positives = 156/522 (29%), Gaps = 88/522 (16%)

Query: 3   LQDLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + DL      E++    + I P +  ER++   V  DSR +  G +F+A+ G + DGH  
Sbjct: 1   MIDLTVARVTEIVGGALVDISPEEAAERRVTGSVEFDSRAVGPGGLFLALPGARSDGHDH 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPEN-- 116
                         + A       A      P +VV  + R         L      +  
Sbjct: 61  AA-----------SAIAAGAVAVLAARPVGVPAIVVAPDPRTGDGGLTGVLEHDADGSGA 109

Query: 117 -----------------------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                                  I+ +TG+SGK+S    V  + +  G         +  
Sbjct: 110 AVLAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAVVLELLGEVVAPPESFNNE 169

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                     T S  YL   +S             A   G             G   N+G
Sbjct: 170 LGHPWTVLRATRSTDYLILEMS-------------ARRPGNIAALAAIAPPKIGVVLNVG 216

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--SVG 271
             H+    +++A    K  L  + + +    I+  DD     +         RV   S  
Sbjct: 217 TAHLGEFGSREAIARTKTEL-PQAIMQSGVVILNVDDPAVAAMADATVARVIRVSRGSYS 275

Query: 272 YQG-----KFIHLKKVCAIHNKQQVTISVEG---KDFDFLFPLPGEFQVYNALVAAGLCI 323
           + G                  + + T+          +    + G+ QV NAL AA + +
Sbjct: 276 HPGSPNSPDVWTGPVSLDELARPRFTLHTRDPRAGATEIQLGVYGDHQVANALCAAAVGL 335

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
             G     V   L     V      V T + G  +  D Y    +S+   L+ +  I  G
Sbjct: 336 ECGASVEEVAVALAATGPVSRHRMQVTTRADGVTVIDDTYNANPDSMRAGLQALAWIAHG 395

Query: 383 RI-------------IVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSED 424
                            V G   +  +       +I      LD++ + +V     RS +
Sbjct: 396 GTHDKNQPGSCARRSWAVLGEMAELGEDSITEHDRIGRLAVRLDVSRLVVVGGG--RSIN 453

Query: 425 PEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               R  ++ G      +   +   A+      +   DV+++
Sbjct: 454 AMH-RGAVMEGSWGLETVNVADPAAALTLLRAEVRPGDVVLI 494


>gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
 gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
          Length = 469

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/419 (20%), Positives = 155/419 (36%), Gaps = 55/419 (13%)

Query: 12  PELINQ-LSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           P L+ Q LS   +  ++       + +SSD+R +Q G +FVA+ G   D +L++ QA+  
Sbjct: 9   PALLEQTLSATRVDAQDGTLPEVFHSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTA 68

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  I+ S   +            P+ VV +    ++  A           + +TG+SGK
Sbjct: 69  GASGILCSRPPAQSLP-------IPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSSGK 121

Query: 127 SSVASFVQQICQ-------RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++V   +  I           G  +  IG   T+ +   D                    
Sbjct: 122 TTVKEMLGLIVSSRYRTGITRGNLNNHIGLPLTLLNCPSDRTHLVLE------------- 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT------QQAYFNAKMRL 233
                  +  S+ G   H  +  +   G  TN+   H+            +   +AK  L
Sbjct: 169 -------MGMSAPGEIAHLAELAQPQIGIVTNILAAHVAGFGGGNLVSALRGIAHAKGEL 221

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQV 291
             + LP +  A++ A D +   +       GC +LS G Q  G  +         +    
Sbjct: 222 L-QALPHDGLAVLPAIDPHLALLQSL---TGCAILSFGPQSSGADVVFTPPSYGDDGMLS 277

Query: 292 TISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+ +  G+ F    P  G     NA+ A      +G+D+A + E L +  +  GR   V 
Sbjct: 278 TLILPNGERFALNLPGFGPHLWLNAVAACAAAYGLGLDAAAMQEGLSRFKLQKGRGS-VE 336

Query: 351 TNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL 407
               G RI  D Y     ++ + L+ +  +    + I V G   +  +    +  ++A 
Sbjct: 337 HGQVGCRILNDTYNANVGAMRVALEALSHMAPAPQRIAVLGDMLELGEAADTLHAELAQ 395


>gi|187777470|ref|ZP_02993943.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
 gi|187774398|gb|EDU38200.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 150/427 (35%), Gaps = 54/427 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA   +     ++++     ++A I S+ P ++          +   FL         
Sbjct: 53  EKGANIYIGHKKENIKNADLIVYTAAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKY 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A++GT GK++  S +  +  ++ +    I     +     + R+      ++ 
Sbjct: 113 N-----VAISGTHGKTTTTSMLSHVALKANVDP-TILVGGNLDIINGNVRVGKSD-FFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y SS                           G   N+  DH+DY++      NA  
Sbjct: 166 EACEYKSSFLKFF-------------------PYIGVILNIDADHLDYYKDLDDIKNAFS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
           + F +L+PK+   I Y +D   + ++K A    C V++ G     I    +         
Sbjct: 207 K-FIKLIPKDGYLIAYGEDKNIQSIIKEA---NCNVITYGINSGDIQAHNIEYDEKACGS 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +  + K F     +PG+  + N+L +  + +A  + +  ++E +E       RFE  
Sbjct: 263 FDVVKNKQKLFSVKLNVPGKHNILNSLASICIGLASNMKNEDIIEGIESFFGTHRRFELK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    +  DYAH    +   L   +     ++  VF                   D 
Sbjct: 323 GCKNN-ITVIDDYAHHPTEISATLDAAKKYPHNKMFCVFQPHTYSRTLTLFDDFTKCFDN 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIR-TAIEMLNKQDVL 462
           AD  I+ D     E    I    + G     E+G      ++ + I+   IE     D++
Sbjct: 382 ADEIILADIYAAREKDTGIINSDMLG-DKLRERGLKCTNFHKFDDIKNYLIENAKTGDLI 440

Query: 463 VVAGKGH 469
           +  G G 
Sbjct: 441 LTVGAGD 447


>gi|254462310|ref|ZP_05075726.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           HTCC2083]
 gi|206678899|gb|EDZ43386.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 471

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 146/426 (34%), Gaps = 45/426 (10%)

Query: 56  GHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH+F+ Q       AE +V+SSA    +          + VV        L   +L    
Sbjct: 63  GHIFVGQKAENLESAEVVVISSAIKSGNPELDEARRRGLPVVRRAEMLAELMRLKLN--- 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V  +   +G     +     I ++  + R+     +     
Sbjct: 120 ----IAVAGTHGKTTTTTMVATLLD-AGKFDPTVVNGGIIHAYGSNARMGQGEWM----- 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        VEA       +RL          TN+  +H+++  T++         
Sbjct: 170 ------------VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGTEENLHQG-FLD 213

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
           F   +P    AI   DDA  + ++ +  +   RV++ G+     +    +          
Sbjct: 214 FTSNIPFYGLAICCTDDADVQTLVGKLTDR--RVVTYGFNAQADVRAVGLHYKGGVAMFD 271

Query: 293 ISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           I ++ +D        P+PG+  V NAL A  +   +G+    +   L     V  RF  V
Sbjct: 272 IHLQNEDQVIEGCSLPMPGDHNVSNALSAVAVARHLGMSGDEIRRALAAFGGVNRRFTKV 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                G  I  DY H    +  +LK  R  + GR+I +                    + 
Sbjct: 332 A-EIDGVTIIDDYGHHPTEISAVLKAARQASEGRVIAIHQPHRYTRLHHHFEDFCSCFNE 390

Query: 410 ADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           AD+  +T+     E+P       + +   I HG         + E      E     D++
Sbjct: 391 ADVVAITEIYAAGEEPIEGASRDDLVAGLIRHGHRHARSITTQDELTALVKEQAKPGDMV 450

Query: 463 VVAGKG 468
           V  G G
Sbjct: 451 VCLGAG 456


>gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
 gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
          Length = 821

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 147/414 (35%), Gaps = 31/414 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   L           I+ + +DSR +      +F A+   + DGH +IP    +G 
Sbjct: 5   IEEITAILGAKRTGTTSSTIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPDLYQKGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              V++         A+  ++   L+V N  K L   AS+   +    ++ +TG++GK+ 
Sbjct: 65  RNFVINEIPEA----ASSYTDANFLIVPNPLKSLQRLASKHREQFQVPVIGITGSNGKTV 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ QI             T T S  + ++++  P  ++L    + L           
Sbjct: 121 VKEWLYQILS--------PDRTITRSPRSYNSQIGVPLSVWLMNEHTELGIFEA-----G 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +     I+   G  TN+G  H +   + Q     K++LF++        +   
Sbjct: 168 ISEMGEMEALRPIIQPTIGILTNIGGAHQENFSSVQDKCMEKLQLFKDC----DVIVYNG 223

Query: 249 DDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           D+   +  V K    A     S     + + ++K+        +     G   ++  P  
Sbjct: 224 DNELITSCVTKSLFTAREIAWSTKDSERPLFIEKILKDDTGTTIKYRYLGFFKEYRIPFI 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +  + N+L    + + + +    + E +  L  +  R E     +    I   Y     
Sbjct: 284 DDASIENSLNCLAVALYLMVPPETIAERMLHLEPIAMRLEVKEGKNGCTLINDSYNSDFA 343

Query: 368 SLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAI 414
           SL++ L  +       +    ++     +  Q  + +  ++A        D  I
Sbjct: 344 SLDIALDFMMRRSEDKNRERTLILSDMLESGQTSKLLYRQVADLVHSRKVDHII 397


>gi|256751648|ref|ZP_05492523.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749457|gb|EEU62486.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 464

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 141/428 (32%), Gaps = 47/428 (10%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N PI+   +    L L   +         +AV G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPII---DRATLLGLIMKKYKYG-----IAVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I    G+                 N     S  ++ +A  Y  S    +
Sbjct: 119 GKTTTTSLISVILD--GMEFDPTVLVGGEVDVIGGNVRVGSSEYFVTEACEYTDSFLKFY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FD 301
           +   DDA +  V+         +++ G         K  +  +K      V  K+    +
Sbjct: 217 VACKDDANTMYVVN---GLNKNIVTYGIYEDSDWKAKNISFDDKGCAIFDVYYKEEYMGN 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  D
Sbjct: 274 FKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++  L+  +     RII +F                 + D AD  I+ D    
Sbjct: 333 YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAESFDNADKIIIADIYAA 392

Query: 422 SEDPEKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVH 473
            E    I +       I       +   +    +    +     D+++  G G+  E   
Sbjct: 393 REKDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVLTVGAGNIYEVGE 452

Query: 474 IVTNGEKK 481
           +   G KK
Sbjct: 453 MFLKGHKK 460


>gi|170760239|ref|YP_001788888.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A3
           str. Loch Maree]
 gi|229486484|sp|B1KTF0|MURC_CLOBM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169407228|gb|ACA55639.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 458

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 148/427 (34%), Gaps = 54/427 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +     +++D     ++A I S+ P ++          +   FL         
Sbjct: 53  DKGAKIYIGHKKENVKDADLIVYTAAIASDNPEIIEAKEKNIKLMDRADFLGNLMKGYKY 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A++GT GK++  S +  +  ++ +    I     +     + R+      ++ 
Sbjct: 113 N-----IAISGTHGKTTTTSMLSHVALKANVDP-TILVGGNLDIINGNVRVGESD-FFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y SS                           G   N+  DH+DY++      NA  
Sbjct: 166 EACEYKSSFLKFF-------------------PYIGVILNIDADHLDYYKDLDDIKNAFS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
           + F +L+PK+   + Y +D   + ++K A    C V++ G     I    +         
Sbjct: 207 K-FIKLIPKDGYLVAYGEDKNIQSIIKEA---NCNVITYGINSGDIQAHNIEYDEKACGN 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   K F     +PG+  + N+L +  + +A  +    ++E +E       RFE  
Sbjct: 263 FDVFKDNQKLFSVKLNVPGKHNILNSLASICIGLASDMKDKDIIEGIESFFGTHRRFELK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    +  DYAH    +   L   +     ++  VF                   D 
Sbjct: 323 GCKNN-ITVIDDYAHHPTEISATLDAAKKYPHNKMFCVFQPHTYSRTLTLFDDFTKCFDN 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIR-TAIEMLNKQDVL 462
           AD  I+ D     E    I    + G     E+G      ++ + I+   IE     D++
Sbjct: 382 ADEIILADIYAAREKDTGIINSNMLG-DKLRERGLKCTNFHKFDDIKNYLIENAKDGDLI 440

Query: 463 VVAGKGH 469
           +  G G 
Sbjct: 441 LTIGAGD 447


>gi|289549278|ref|YP_003474266.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
 gi|289182895|gb|ADC90139.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
          Length = 448

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 150/422 (35%), Gaps = 50/422 (11%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTR--------KFLSLFASRLYG 111
             G    +     +++D    + S     + P LV   +R        + L+       G
Sbjct: 49  DAGIRVYIGHRPENVEDAQVVVYSSAVSSDNPELVYARSRGIPTIPRGEMLAELFRIKEG 108

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV G+ GK++  S +  I   +GL    +     +  F  + RL         
Sbjct: 109 ------VAVCGSHGKTTTTSMIAYILHEAGLDPTVL-IGGILQRFNGNARLGKGD----- 156

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                             S           +       TN+ R+H+D+++   +   A +
Sbjct: 157 ---------------FIVSEADESDGSFLKLTPTVAVITNIDREHLDFYKDYDSIRKAFL 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-Q 290
             F   +P    +++ ADD    +++        +  + G Q +   + K   +      
Sbjct: 202 E-FANSVPFYGFSVLNADDEGCSQIIPYVSK---KHYTYGIQTEAHLMAKNLRLLEGTYS 257

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   GK+  +    +PG+  V NAL +  + + + +   ++ E LE       R E  
Sbjct: 258 FDVVWMGKNLGNIHLKVPGKHNVQNALASILVALQMDVSFDVIKEALESFRNAERRLELK 317

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALD 408
           G   +G  +Y DY H    +  ++K +R +     I +VF                  L 
Sbjct: 318 GF-YKGFPVYDDYGHHPTEIRSVIKAVREMYPDTKILLVFQPHRYSRTYYLLQDFATVLR 376

Query: 409 LADIAIVTDDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            AD  IVTD  P  E+    + A+ +  I G I   ++ E +  A++ L    V++  G 
Sbjct: 377 EADSCIVTDIYPAGEENRWHVSAKQLAEISGCIYAPSKEE-VFQAVKRLADNHVILFMGA 435

Query: 468 GH 469
           G+
Sbjct: 436 GN 437


>gi|18146159|dbj|BAB82199.1| UDP-N-acetylmuramate-alanine ligase [Clostridium perfringens str.
           13]
          Length = 435

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 143/426 (33%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 31  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 90

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 91  N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 143

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 144 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKDINHIKDT-F 183

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +         
Sbjct: 184 KQFVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNIEFNEKGCAT 240

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 241 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYK 300

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   RI+ VF                   D 
Sbjct: 301 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDD 359

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 360 CDELVLMDIYAAREKDLGEINSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLL 419

Query: 464 VAGKGH 469
             G G 
Sbjct: 420 TVGAGD 425


>gi|326390379|ref|ZP_08211938.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993656|gb|EGD52089.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 876

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 158/441 (35%), Gaps = 37/441 (8%)

Query: 65  AQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   I  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 ENGAIIEINASPGIRMHHYPSKGKPR-------NVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G   + +G T T   +  D  +          A + L+ + + 
Sbjct: 487 NGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADKNID 543

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241
              +E +  G+ +  L       G  TN+  DH+  D  +T +     K  L  E + ++
Sbjct: 544 AAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA-LVVEAVKED 602

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQV 291
             +++ ADD  +  + +RA                       G  +++K    +    Q+
Sbjct: 603 GYSVLNADDPMTTYLAQRAKGKIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIVIANGQI 662

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRFEFV 349
              V+ ++          + V NAL A      + +   ++ + ++  +         F 
Sbjct: 663 IPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFYCDTTHNPGRFN 722

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I    
Sbjct: 723 LFNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGQG 782

Query: 410 ADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDV 461
            D   V +D + R   P ++   +  G                  EA+R A+      D+
Sbjct: 783 FDFIYVKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEALRAAMYNAEGGDL 842

Query: 462 LVVAGKGHETVHIVTNGEKKM 482
           +VV    +E    +    ++ 
Sbjct: 843 IVVF---YEKYQPIIEVIEEF 860


>gi|85714977|ref|ZP_01045962.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
 gi|85698174|gb|EAQ36046.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
          Length = 467

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 144/421 (34%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  NGADVLVVSTAIKRDNPELMAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +G     +     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVATLLD-AGDFDPTVINGGIINAYGTNARLGAGDWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T  A  +A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPTDIAIVTNVDAEHLDHFKTFDAVQDA-FRSFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD--- 301
           +  D    + ++ R  +   R+++ G      + L  +          +    +  D   
Sbjct: 216 MCIDHPVVQTMVGRIEDR--RIITYGQNPQADVRLVDLAPNGGGSHFKVVFRNRKTDAAH 273

Query: 302 ----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                + P+PG     NA  A  +   +GI  A +   L     V  RF   G   +G  
Sbjct: 274 EIPDLVLPMPGPHNALNATAAIAVAHELGIPDATIRNALAAFGGVKRRFTKTGEW-KGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I  DY H    +  +LK  R  T+GR++ V                    + ADI +V +
Sbjct: 333 IIDDYGHHPVEIAAVLKAARESTAGRVVAVVQPHRYTRLQALFEEFCTCFNDADIVVVAE 392

Query: 418 DNPRSEDP-EKIRAEIIHGIPGFIEKGNRI-------EAIRTAIE-MLNKQDVLVVAGKG 468
             P  E P   I  +  H + G    G+R         A+   I  +    D +V  G G
Sbjct: 393 VYPAGETPIAGIDRD--HFVLGLRAHGHREVVSLQESAALAGVIASLAKPGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|220931753|ref|YP_002508661.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
 gi|219993063|gb|ACL69666.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
          Length = 459

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/416 (21%), Positives = 155/416 (37%), Gaps = 49/416 (11%)

Query: 66  QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+ IV+S+A      +  A  ++  P+           + A  +  K     +A++GT
Sbjct: 62  KGADMIVISTAIPEDNSELQAARKAGLPVY------GRAQMIAKLMEDK---KTIAISGT 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            GK++  S V  I + + +    +  G  + I       +                   G
Sbjct: 113 HGKTTTTSMVATILKENKMDPTVMVGGVLNNIGGNVYLGK-------------------G 153

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V+    S G   +            TN+  DH DY+ +++   N   + F   +PK+
Sbjct: 154 EYFVTEADESDGSLLY----FDPSGVVVTNIEFDHHDYYDSKEKLLNT-FKEFVNKIPKD 208

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF- 300
             AI+YA+D   ++++    N   RVL+ G     +    +  +       +    +   
Sbjct: 209 GKAIVYAEDDNIRKILD---NEDRRVLTYGINAGKLKAININTLPFGSYYNLVYGERVLG 265

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    +PG   V N+L A  + + +G+    + E L K + V  RFE  G       I  
Sbjct: 266 EIRLQVPGVHNVLNSLAAVAVGMYVGLSFTDIQESLGKFYGVHRRFEKKGL-IDSILIID 324

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH    ++  LK  R     RII +F                   D  D  IVTD   
Sbjct: 325 DYAHHPTEIKATLKAARNTGYERIIAIFQPHRYSRTRHFMEEFAKCFDDVDHLIVTDIYS 384

Query: 421 RSEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            SE P      EK+  +I +   P         E +    +++  +D+++  G G+
Sbjct: 385 ASEKPIPGVTAEKLALKIDNCNGPDVDYIPELEEVVDYVEKIIKPRDLVITIGAGN 440


>gi|312794215|ref|YP_004027138.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181355|gb|ADQ41525.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 455

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 150/406 (36%), Gaps = 38/406 (9%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    I +    L +    +FL L          +N++A++GT GK++  S
Sbjct: 64  VIYTAAISKDNPELIAAKRMNLKIYERAEFLGLLMKNF-----KNVIAISGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +     PT  + +F +          ++  +  YL  +   +V      
Sbjct: 119 MIGYILKKASYN-----PTILVGAFVKQL-----GGNFVIGSKEYLVVEACEYVDS---- 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +  N+  + F + +P     +   DD 
Sbjct: 165 -------FLKFNPTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGE 309
             K+V+ + H     + +   +   I    +       +  +     +        +PG 
Sbjct: 217 NVKDVISKLHTQVVCIST--KEKADIFAGNISCNDGYYEFDVKNNNDEILAHIKLNIPGF 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYN+L A  +   +G++S  + + L +      R E VG    G  +Y DYAH    +
Sbjct: 275 HNVYNSLAAFAVASKLGVESITIEQALSEFCGASRRLEKVG-EFDGIYLYDDYAHHPTEI 333

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KI 428
           +  L  ++ ++ G++  +F                 +L  AD  IVTD     E     I
Sbjct: 334 KATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAESLKWADKVIVTDVYAAREKNTFGI 393

Query: 429 RAE----IIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
            +E     +  I    E  +  E I    ++   K D++   G G 
Sbjct: 394 TSEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKGDIIATIGAGD 439


>gi|305680934|ref|ZP_07403741.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659139|gb|EFM48639.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
          Length = 496

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 99/492 (20%), Positives = 166/492 (33%), Gaps = 53/492 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLF---- 59
           +I     E+   +          ++    V  DSR + +G +FVA+ G K DGH +    
Sbjct: 1   MITLRLDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAAAA 60

Query: 60  -------IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
                  +  A   G  A++V  A  +   S     +T    V    + ++  A  +  K
Sbjct: 61  MDRGAAGVLAARPVGVPAVIVPPATEVDHHSYATEHDTDG-SVAAVLEGMAKLARYVVDK 119

Query: 113 HPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++ +TG++GK+S    V  I + +G +    G  +            T +  Y
Sbjct: 120 LSARGLTVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCTEATKY 179

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   +S             A S G   H         G   N+G  H+    ++      
Sbjct: 180 LVSEMS-------------ARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIART 226

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  L E L P +  A++ ADD Y   +  R         +               + N  
Sbjct: 227 KGELVEAL-PADGIAVLNADDDYVAAMADRTSATVWSFST--LHKPVRVAATDIRLDNLS 283

Query: 290 QVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           + T ++ G D             + GE QV NAL AA   +A G+D A V + L    V 
Sbjct: 284 RPTFTLIGTDSQKVTHTAQVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVR 343

Query: 343 PGRFEFVGTNSRGGRIYVD-YAHTSNSL-----EMILKNIRTITSGRIIVVFGC----GG 392
                 V        +  D Y     S+      + L   +     R I V G     G 
Sbjct: 344 SAHRMDVHHAGNDVIVIDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQ 403

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D       +M  +A    D+ +V   +   E+   +           I   +  +A    
Sbjct: 404 DATADHVELMRTVAEQGIDLVVVVGTD---ENARAMINAAAAMGLRAIPTADTTQAATEV 460

Query: 453 IEMLNKQDVLVV 464
           +++L + DV++V
Sbjct: 461 LKVLGRGDVILV 472


>gi|197303947|ref|ZP_03168979.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
 gi|197296915|gb|EDY31483.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
          Length = 458

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 142/417 (34%), Gaps = 54/417 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           ++   +   ++A I  + P L+    +K   L  + L G+  +N    +AV+GT GK++ 
Sbjct: 66  ITDDINCVVYTAAINKSNPELMEAVGKKIPMLTRAELLGQLMKNYDTPIAVSGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            S + ++   + +       G   TI    +  +    S  ++ +A  Y +S    +   
Sbjct: 126 TSMISEVLLAADMDPTISVGGILKTIGGNIRVGK----SGNFITEACEYTNSFLHFY--- 178

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH+D+ +  +   ++    F  LLP +   II 
Sbjct: 179 ----------------PKISVILNIEEDHLDFFKDLEDIRHS-FHQFSALLPSDGTLIIN 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLF 304
            D    +E+ +      C V++ G   +F +         K  V+               
Sbjct: 222 GDIKDYQEIYE---GLDCNVITYGSSAEFDYSATEIQYDEKGFVSFELLKHNTSCGRVQL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  V NAL A      +GI    + + L        RFE+ GT   G  +  DYAH
Sbjct: 279 SVTGDHNVSNALAAIATAELLGIPMDTIRKGLLSFSGTDRRFEYKGT-FNGVTVVDDYAH 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
               +   LK  +      I  VF                 AL   D  ++ D     E 
Sbjct: 338 HPTEIAATLKAAQHYPHNEIWCVFQPHTYTRTKAFFHEFAEALSHTDHLVLADIYAARET 397

Query: 424 --------DPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                   D  K  A++    H  P F E     EA     E     D+L+  G G 
Sbjct: 398 DTLGISSSDLAKEAAKLGTDTHYYPSFAEI----EAFLK--ENCKSGDLLITMGAGD 448


>gi|25008803|sp|Q8XHJ0|MURC_CLOPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 457

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 143/426 (33%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 53  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 113 N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 166 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKDINHIKDT-F 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +         
Sbjct: 206 KQFVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNIEFNEKGCAT 262

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   RI+ VF                   D 
Sbjct: 323 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDD 381

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 382 CDELVLMDIYAAREKDLGEINSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLL 441

Query: 464 VAGKGH 469
             G G 
Sbjct: 442 TVGAGD 447


>gi|209884384|ref|YP_002288241.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
 gi|209872580|gb|ACI92376.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
          Length = 482

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 145/420 (34%), Gaps = 51/420 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 80  NGADVLVVSTAIKRDNPELMAARAQRIPVVRRAEMLAELMRLKSC-------IAIAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +G     +     I+++  + RL     + +    S          
Sbjct: 133 KTTTTSMVATLLD-AGALDPTVINGGIINAYGTNARLGEGEWMVVEADESD--------- 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           + +     TN+  +H+D+ +T +A  +A  R F E +P    A+
Sbjct: 183 -----------GTFLKLPVDVAIVTNVDPEHLDHFKTFEAVQDA-FRHFVEGVPFYGFAV 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF---- 300
           +  D A  + ++ R  +   R+++ G        L  +       +  + V  +      
Sbjct: 231 MCIDHAVVQALVGRIEDR--RIITYGENPQADARLVDLQPFPGGSKFKVEVRHRKAGAAH 288

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D + P+PG     NA  A  +   IG+    + + L     V  RF   G    G  
Sbjct: 289 VIADLVLPMPGRHNALNATAAIAVAHEIGMSDEAIRKALAGFGGVKRRFTRTGEW-NGVT 347

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +  DY H    +  +LK  R   +GR+I V                    + AD  IV D
Sbjct: 348 VIDDYGHHPVEIAAVLKAARDTATGRVIAVVQPHRFSRLHTLFEEFCTCFNDADTVIVAD 407

Query: 418 DNPRSEDP-EKIRAEIIHGIPGFIEKGNRIE-AIRTAIEM-------LNKQDVLVVAGKG 468
             P  E P   I  +    + G    G+R   A+ +A ++           D +V  G G
Sbjct: 408 VYPAGEAPIPGIDRD--AFVLGLRAHGHREVIALESAAQLASIVRRIAQPGDFVVCLGAG 465


>gi|161485639|ref|NP_563409.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           str. 13]
          Length = 466

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 143/426 (33%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 62  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 121

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 122 N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 174

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 175 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKDINHIKDT-F 214

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +         
Sbjct: 215 KQFVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNIEFNEKGCAT 271

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 272 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYK 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   RI+ VF                   D 
Sbjct: 332 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDD 390

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 391 CDELVLMDIYAAREKDLGEINSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLL 450

Query: 464 VAGKGH 469
             G G 
Sbjct: 451 TVGAGD 456


>gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 470

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/392 (18%), Positives = 141/392 (35%), Gaps = 34/392 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWRVDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSR------RPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+VD+ +  L         +    ++AVTG+ GK+S    + ++    G +   
Sbjct: 73  SEDAPLLLVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAA 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
           +               +  +   +   L+ +       V     +H G         +  
Sbjct: 133 V--------------ASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++     +     K  + + L P    AI+ AD A +  +   A     
Sbjct: 179 VAMVTTVAPVHLEAFDGIEGIAAEKAAIMDGLEP-GGVAILNADIAEAPILQSVAERVTS 237

Query: 266 RVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAG 320
            V   G          HL       ++ +  + +  G+         G     NAL A  
Sbjct: 238 DVQWFGTGTGPIAPTYHLTGTTLRGDETEAVVMLPGGQTHRLHIQSLGAHFAMNALGALA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN---SRGGRIYVDYAHTSNSLEMILKNIR 377
              A+ +D A  ++ L     V GR      +    +G  + +D ++ +N   +      
Sbjct: 298 CLAALDLDLAKAVQSLSLWSPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAV 357

Query: 378 TI---TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                 +GR I   G   +    ++ +   +A
Sbjct: 358 LAATPCAGRRIAYLGDMKELGPQEQRLHSDLA 389


>gi|288818598|ref|YP_003432946.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787998|dbj|BAI69745.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752189|gb|ADO45672.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobacter thermophilus
           TK-6]
          Length = 452

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 151/426 (35%), Gaps = 59/426 (13%)

Query: 65  AQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDN-------TRK-FLSLFASRLYG 111
            +GA   +   A       +  +S+ +  + P +V           R   L+       G
Sbjct: 49  KKGARVFIGHRAENVNSVDVVIYSSAVSESNPEIVQAKKMGIPVIPRGDMLAELFRLKEG 108

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV G+ GK++  S +  +   +G     I     +  F  + RL         
Sbjct: 109 ------IAVCGSHGKTTTTSMIAHMVHEAGYDPTVI-IGGVLQKFGSNARLGK------- 154

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +  S           +       TN+ R+H+ Y++      +A +
Sbjct: 155 -------------DQLIISEADESDGSFLKLLPTVAVITNIDREHLGYYKDLDEIKSAFL 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-Q 290
           R F   +P     ++ ADD  S+EVMK        +++ G + +   + +  ++      
Sbjct: 202 R-FANSVPFYGFCVMNADDENSREVMKSVKAP---LITFGIEREAHLMARNLSLEGGCYS 257

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  EGK        + G   VYNAL    +C+ +GI  + + + LE       R EF 
Sbjct: 258 FDLFYEGKPLTRIHMSVAGRHNVYNALAGIAVCLRMGISVSNIKKALESFKNAERRLEFK 317

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           G   +G  +Y DY H    +  ++K +R +    RI++VF                  L 
Sbjct: 318 G-YFKGAAVYDDYGHHPTEIRAVIKALREMYLQRRIVLVFQPHRYSRTYYLFKDFVEVLK 376

Query: 409 LADIAIVTDDNPRSED------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            AD+ ++TD     E+       + +      G   F  K    +AI   ++     DV+
Sbjct: 377 EADVCLLTDIYSAGEENSYGVSAQDLAK--AAGCAFFENKEELFDAIEKKVKDA---DVI 431

Query: 463 VVAGKG 468
           +  G G
Sbjct: 432 LFMGAG 437


>gi|167036589|ref|YP_001664167.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115016|ref|YP_004185175.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855423|gb|ABY93831.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928107|gb|ADV78792.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 464

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 141/428 (32%), Gaps = 47/428 (10%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N PI+   +    L L   +         +AV G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPII---DRATLLGLIMKKYKYG-----IAVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I    G+                 N     S  ++ +A  Y  S    +
Sbjct: 119 GKTTTTSLISVILD--GMEFDPTVLVGGEVDVIGGNVRVGSSEYFVTEACEYTDSFLKFY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FD 301
           +   DDA +  V+         +++ G         K  +  +K      V  K+    +
Sbjct: 217 VACKDDANTMYVVN---GLNKNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGN 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  D
Sbjct: 274 FKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++  L+  +     RII +F                 + D AD  I+ D    
Sbjct: 333 YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAGSFDNADKIIIADIYAA 392

Query: 422 SEDPEKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVH 473
            E    I +       I       +   +    +    +     D+++  G G+  E   
Sbjct: 393 REKDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVLTVGAGNIYEVGE 452

Query: 474 IVTNGEKK 481
           +   G KK
Sbjct: 453 MFLKGHKK 460


>gi|317050839|ref|YP_004111955.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5]
 gi|316945923|gb|ADU65399.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5]
          Length = 453

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 146/414 (35%), Gaps = 42/414 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V SSA S ++          I V+    + L+      +G      + + G  GK+
Sbjct: 65  AHVVVTSSAVSKENPEVAEARRKRIPVISRA-EMLAELMRMKHG------VLIAGAHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +GL      PT  I       +                  QG   V+ 
Sbjct: 118 TTTSLVATVLTDAGLD-----PTVVIGGRLNKIKSNAK------------LGQGDLIVAE 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S G   H    +  +    TN+ ++H+D++ + +   N  ++ F    P    + + 
Sbjct: 161 ADESDGSFMH----LPPVLSVVTNIDKEHMDHYGSMENLKNTFLK-FINKTPFFGVSFVC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DD + ++++ R   +    ++ G      I    +   +  Q+  ++  G++  +F   
Sbjct: 216 LDDEHIQDILPRIERSH---VTYGLNTNADIFAHHIRRTNGCQRFDVNYNGRELGEFRLC 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   V N+L   G+ +   +    +   LE    V  RFE  G    G  +  DY H 
Sbjct: 273 LPGVHNVVNSLPVIGIALEFEVPVDTIRHSLEHFAGVHRRFEITGH-MNGFAVVDDYGHH 331

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +  +LK  R   SG++I +F         +       +   AD  IV D  P  E P
Sbjct: 332 PTEIMAVLKAAREWYSGKVIAIFQPHRYSRVRELYEDFTKSFYDADEVIVADIYPAGEAP 391

Query: 426 ------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
                 +KI  EI   G           E +        +   ++  G G+   
Sbjct: 392 IPGLNSQKIAQEIKARGHKQVTHMAGFDEIVAYLKAQHCEDGAIITLGAGNVNT 445


>gi|163746132|ref|ZP_02153491.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
 gi|161380877|gb|EDQ05287.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
          Length = 472

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 144/427 (33%), Gaps = 47/427 (11%)

Query: 56  GHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           G +F  QA     GA  IV+SSA    +          + VV        L         
Sbjct: 58  GRIFEGQAAENIEGAAVIVISSAIKPGNAELDEARRRGLPVVRRAEMLAELMRL------ 111

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++ +AV GT GK++  + V ++    G+    +     I ++  + R+     +     
Sbjct: 112 -KSNIAVAGTHGKTTTTTLVAELLVAGGIDPTVVNG-GIIHAYGSNARMGQGEWM----- 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        VEA       +RL          TN+  +H+++              
Sbjct: 165 ------------VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGDFDTLRQG-FLN 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
           F   +P    A+   D    + ++ +  +   RV++ G+     +    +          
Sbjct: 209 FVSNIPFYGLAVCCTDHPEVQSLVGKLTDR--RVMTYGFNAQADVRAVGLHYKDGVAHFD 266

Query: 293 ISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + ++ +D        P+PG+  V NAL A  +   +G+    +   L     V  RF  V
Sbjct: 267 VHLQSEDMVIENCALPMPGDHNVSNALAAVTVARHLGMKLEQIRAALGSFGGVNRRFTRV 326

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G    G  +  DY H    +  +LK  R  + GR+I V                    + 
Sbjct: 327 G-EVDGVTVIDDYGHHPVEISAVLKAARQASKGRVIAVHQPHRYSRLSHHFDEFCACFND 385

Query: 410 ADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDV 461
           AD+  +TD     E+P         +   I HG        +  EA+ +  +      D+
Sbjct: 386 ADVVGITDVYAAGEEPIPGADRDGLVAGLIQHGHRHAYAVED-AEALTQLVLREARPGDM 444

Query: 462 LVVAGKG 468
           +V  G G
Sbjct: 445 VVCLGAG 451


>gi|189423738|ref|YP_001950915.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter lovleyi SZ]
 gi|229620044|sp|B3E3Y1|MURC_GEOLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189419997|gb|ACD94395.1| UDP-N-acetylmuramate/alanine ligase [Geobacter lovleyi SZ]
          Length = 456

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 138/424 (32%), Gaps = 48/424 (11%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A       + +V S+A    +       +  + V+        L   +         
Sbjct: 55  IGHAAENLTNVDVVVTSTAVQSDNPEVIEAKHRMVPVIPRAEMLAELMRMKYG------- 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +A+ GT GK++  S V  +   +G+    +  G  +T+ S A+  +             S
Sbjct: 108 IAIAGTHGKTTTTSMVATVLTHAGIDPTIVIGGKLNTLGSNAKLGQGKFLVAEADESDGS 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +L+                       +       TN+  DH+DY+             F 
Sbjct: 168 FLT-----------------------LSPTIAVVTNIDADHLDYYTGGLEQIKDTFVSFI 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTIS 294
             +P    A++  +D    E++ R      R ++ G      +    V     +   T  
Sbjct: 205 NKVPFYGLAVLCQEDRNINEIIPRIKK---RFMTYGLSSQADLRATHVKLDGFQTTFTAH 261

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G    +  F +PG   V NAL    + + + +    + E   +   V  RF  V    
Sbjct: 262 YKGYRLGEISFNMPGAHNVLNALACTAVALELDVPFDKIQEGFAQFGGVGRRFT-VKGEK 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  +  DY H    +   L   R      R++V F         +           AD+
Sbjct: 321 NGIMVVDDYGHHPAEIRATLGAARNGWPERRLVVAFQPHRYSRTKELFNEFVTCFYDADV 380

Query: 413 AIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++TD    SE P      E++  E   HG        +R +       ++ + D+++  
Sbjct: 381 LVLTDIYAASEQPIPGVSAERLAEETRRHGQRDVTYIADRNDLPDYLAGIVKEGDIVITL 440

Query: 466 GKGH 469
           G G+
Sbjct: 441 GAGN 444


>gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
 gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
          Length = 825

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 144/403 (35%), Gaps = 29/403 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +        + KI  V +DSR +      +F A+   + DGH +IP+   +G 
Sbjct: 5   IEKVTTLIGARRFGASDAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV+    +    AT  +    L V ++ + L   A R   +    I+ +TG++GK+ 
Sbjct: 65  RNFVVT---EVPADYATEYAEANFLKVVDSLEALQRLAERHRDEFNIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  ++L    + +           
Sbjct: 122 VKEWLNQLL--------CDDMFITRSPRSYNSQVGVPLSVWLLNEHTQVGIFEA-----G 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+      TNLG  H +   +++     K+ LF          +   
Sbjct: 169 ISQPGEMLALRDIIQPTIAVLTNLGDAHQENFISKEMKCKEKLILF----HDAKTVVYNG 224

Query: 249 DDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD      +    +        S+  +     +K V        VT   +G +  +  P 
Sbjct: 225 DDPIVNGCVNELEDFKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPF 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
             +  V N+   A + + +G+   ++ E +++L  +  R E V     G  +  D Y   
Sbjct: 285 IDDASVTNSFACAAVALTLGVGVDVLDERMQQLEPIAMRLE-VKQGQHGCTLINDSYNSD 343

Query: 366 SNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            NSL++ L  +         R  ++             +  ++
Sbjct: 344 INSLDIALDFMNRRPDHQGRRHTLILSDIYQSGMTTDELYQEV 386


>gi|218886057|ref|YP_002435378.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757011|gb|ACL07910.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 455

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 147/414 (35%), Gaps = 42/414 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A   ++          I ++    + L+       G      +A+ GT GK+
Sbjct: 66  AQVLVKSTAIGDENPEVAAARKRGIPIIPRA-EMLAELMRLRTG------IAIAGTHGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    I   +G     I     ++++  + RL   +       ++       + +  
Sbjct: 119 TTTSLTAAIFDEAGTDPTVI-IGGRLNAYGANARLGDGA-----YLIAEADESDGSFLC- 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +  I    TN+  DH+D++ +QQA  +A    F   +P     ++ 
Sbjct: 172 --------------LFPIVTVVTNVDMDHMDHYPSQQAIDDA-FVDFMNKVPFYGMNVVC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            DD   + ++ R       V++ G+        +V A  +     + V G D        
Sbjct: 217 GDDPGVRRLLPRVKRP---VVTYGFGEGNAIRAEVLACADSSLFNVIVNGDDIGQVRLAQ 273

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A G+ +   I    ++  L K   V  RFE  G    G  +  DY H  
Sbjct: 274 PGRHNILNALAAIGVALECDIAPEKIVAGLAKFGGVGRRFERKG-ERDGVLVVDDYGHHP 332

Query: 367 NSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +   L   R      R++VVF                   D  D  ++T+  P SE P
Sbjct: 333 AEIAATLATARQCFPHRRLVVVFQPHRFSRTQALFGEFCKVFDGVDKLLLTEIYPASEKP 392

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
                 + +   I       +      +++  A+ E+L   D+L+  G G+ T 
Sbjct: 393 IPGVSGQSLAQGIRQVSKTDVTYHQDFDSVLAALPEVLQPGDLLLTLGAGNVTT 446


>gi|304386670|ref|ZP_07368952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339255|gb|EFM05333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 452

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 145/412 (35%), Gaps = 35/412 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   +   L +  M    + ++ + +DSR I+AG +F A+ G + D H F+         
Sbjct: 5   DLNFICQALKLL-MPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------- 56

Query: 70  AIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
                   +        R +       L VD+T   L + A          +  +TG+ G
Sbjct: 57  -----VLAAGAAAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSVG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTH 184
           K++V   +  + +R           +T  +F           I L   L  L+ +     
Sbjct: 112 KTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLKLNEKHRYAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESP 243
           + +  +  G         K  A    N  R H+            AK  +++ L   +  
Sbjct: 161 IEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGL-CSDGM 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I  +DA          N   R  + G     +H + +       +  +    +    +
Sbjct: 220 ALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVV 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +G  +  D Y
Sbjct: 278 LPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIKGATLIDDTY 336

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 337 NANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAVMHAEVGAYARDQGI 388


>gi|298369640|ref|ZP_06980957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282197|gb|EFI23685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 455

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 139/420 (33%), Gaps = 38/420 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P     + ++ + +DSR I AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLNLPTPSENKPVSRIVTDSRDICAGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +          +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSHEDCAALDGALKVDDTLAALQTLAKAWRDNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F                 L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDDAVLATAGNFNNHIG-------LPLTLLKL 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                   + +  +  G         K  A    N  R H+            AK  +++
Sbjct: 153 KEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTLDIAKAKSEIYQ 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L  ++  A+I  +D ++      +     R  + G     +H + +       +  +  
Sbjct: 213 GL-GEDGLALIPCEDEHAAVFQTTSQGHQQR--TFGVDSGDVHAENIVLKPLSCEFDLVC 269

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +    + P+PG   V+NA  A  L +A G+    V E L+    + GR   V    +G
Sbjct: 270 GNERAAVVLPVPGRHNVHNAAAATALALAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIKG 328

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  I
Sbjct: 329 ATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 388


>gi|295840062|ref|ZP_06826995.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295827778|gb|EDY43980.2| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 92/431 (21%), Positives = 156/431 (36%), Gaps = 43/431 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A+   A+VVSSA    +          I VV  +    +L A   
Sbjct: 54  GATVHIGHD--AAHLAEDTSAVVVSSAIRADNPELVRARERGIPVVHRSDALAALMAGTR 111

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   LA+ GT GK++  S +       G   S+ IG                    
Sbjct: 112 P-------LAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIG-----GDLDAPGSNAHHGTG 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +  A +  S +                              N+  DH   + + +  + 
Sbjct: 160 EIFVAEADESDRSFHTY-----------------APEVAVVLNVELDHHANYASIEEIYE 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVG-YQGKFIHLKKVCAIH 286
           +    F   +      +I AD   ++E+ +R  + A  RVL+ G  +   + + KV    
Sbjct: 203 S-FETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRVHKVTPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+S+ GK   F   +PG    +NA+ A    +++G+    +   L     V  R 
Sbjct: 262 LTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  G  + G ++   YAH    +   L+ +R    GRI+VVF         +       A
Sbjct: 322 QLKGEAA-GVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRTQELGKEMGQA 380

Query: 407 LDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGF----IEKGNRIEAIRTAIE-MLNKQD 460
           L LAD ++V D  P  EDP E + +E+I          +   +  + +  A+  M    D
Sbjct: 381 LALADSSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGD 440

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 441 LVLTMGAGDVT 451


>gi|302853199|ref|XP_002958116.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
           nagariensis]
 gi|300256584|gb|EFJ40847.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
           nagariensis]
          Length = 696

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 154/370 (41%), Gaps = 34/370 (9%)

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           I    T   + Q  + T P      K L+ +  +      +E  +  L     D + L  
Sbjct: 280 ISRLCTAGKYEQHYKQTLPGLNS-QKLLAGMRDRAAGVAVMEMGTKSLALGTFDYVDLNV 338

Query: 207 GSFTNLGRDHIDYHQTQQAYFNA-KMRLFEELL----------PKESPAIIYADDAYSKE 255
              T L   H+    ++Q    A ++R   EL           P+    +I ADD  ++E
Sbjct: 339 AVVTGLS-VHMGVPASEQPEDRADEVRAAAELAMITLERKLTQPEMQVLVINADDPATEE 397

Query: 256 VMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +++R +NA   V++ G       + ++       + +V I         +  L G    Y
Sbjct: 398 LLRRLNNA-VPVVTFGMSNSRADVFVESYKNNIWETEVIIRTPTGRLQIITNLLGRHNAY 456

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N + A    +A+      ++  +E +  +PGR E +    +   + VD A +  +L  +L
Sbjct: 457 NLVAAVATGVALKAPLQSIVAGIEAVE-IPGRSEVID-EGQEFSVVVDAAQSPETLASML 514

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R   + +I  VFGC G+ D   RP MG +A   +D  IVT++NPR EDP K +    
Sbjct: 515 DALRRGGARQIFTVFGCSGNEDPSIRPKMGAVAHAKSDYVIVTNENPRLEDPAKDQGRTP 574

Query: 434 HGIPGFIEK----------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
                +++K           +R  AIR AI     +DV+++AGKGH+         +   
Sbjct: 575 LWFEPYLQKAQRDNKRYIMEDRYSAIRAAIGTAGPEDVVLLAGKGHQDW------VEHAD 628

Query: 484 VDCDIIREIL 493
            D +I+R  L
Sbjct: 629 TDGNILRGWL 638



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 18/169 (10%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVV------ 73
               + +  +  + S+   +  G IFV   G   +D    I  A+ QGA  IV       
Sbjct: 75  LASSYPDVLVTGLQSNPHLVVPGDIFVLHPGLIPDDDLDAISVAVEQGATVIVAPRVKAE 134

Query: 74  ----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKS 127
                 A      +  +    P++ V+++    +  A+  Y     N++ +   G  GK+
Sbjct: 135 DPGLDPAPDPVGLAGILPDEVPLIRVEDSLAMGARLAAAFYDLPSANMVTIGVMGLLGKT 194

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + A  ++ + +  G +   +G  STI     ++RL      YL + +  
Sbjct: 195 TTAWLIRGLLEELGQT---VGLVSTIEHAIAEDRLD--EDGYLWEPMEE 238


>gi|313904465|ref|ZP_07837842.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
 gi|313470801|gb|EFR66126.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
          Length = 462

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 149/428 (34%), Gaps = 63/428 (14%)

Query: 70  AIVVSSAY--SLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGK 126
            +V ++A   S  +++A +  N P+L    TR   L         K P   + V+GT GK
Sbjct: 72  VVVYTAAIHPSNPEYAAAVEKNIPLL----TRAQLLGEMMKSY--KIP---ICVSGTHGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +   +  +         I    + N     +  +L +A  Y +S       
Sbjct: 123 TTTTSMASHVLMAADKNPTI--SVGGILPLIKGNYHIGNTDTFLMEACEYTNSFLDFF-- 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                   ++  DH+D+ +  +   N+  R F ELLP +   II
Sbjct: 179 -----------------PKISIILDIDADHLDFFKDLEDIRNS-FRKFAELLPADGTLII 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDF-DFL 303
            ADD   K + K   +  C V++        +   +         +     +G+   +F 
Sbjct: 221 NADDPAFKMITK---DLPCEVITYSLSNIGNYTADMITYDELGHASFRALYKGEPIGNFA 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V NAL    L   +GID+  + +  +  H    RFE  G    G  +  DYA
Sbjct: 278 LQVPGSHNVSNALAVIALAEKLGIDADTIQKGFDSFHGTNRRFEQKG-EMNGATVIDDYA 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    ++  L   R +    I  VF                 AL +AD  ++ D     E
Sbjct: 337 HHPTEIKATLNTARRVPHKTIWCVFQPHTYTRTKSLLPQFAEALSIADHVVLADIYAARE 396

Query: 424 ------DPEKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                   + ++ EII         P F E              + + D+L+  G G+  
Sbjct: 397 LDIYGISSKDLQNEIIKLGTDCDYFPSFAEIE------AYLRANVKEGDLLITMGAGN-- 448

Query: 472 VHIVTNGE 479
             IV  GE
Sbjct: 449 --IVQVGE 454


>gi|153940015|ref|YP_001392902.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum F
           str. Langeland]
 gi|166222975|sp|A7GJE2|MURC_CLOBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152935911|gb|ABS41409.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|295320879|gb|ADG01257.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           230613]
          Length = 458

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 147/430 (34%), Gaps = 60/430 (13%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +     +++D     ++A I S+ P ++          +   FL         
Sbjct: 53  DKGAKIYIGHKKENIKDADLIVYTAAIASDNPEIIEAKEKNIKLMDRADFLGNLMKGYKY 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A++GT GK++  S +  +  ++ +    I     +     + R+      ++ 
Sbjct: 113 N-----IAISGTHGKTTTTSMLSHVALKANVDP-TILVGGNLDIINGNVRVGESD-FFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y SS                           G   N+  DH+DY++      NA  
Sbjct: 166 EACEYKSSFLKFF-------------------PYIGVILNIDADHLDYYKDLDDIKNAFS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
           + F +L+PK+   + Y +D   + ++K A    C V++ G     I    +         
Sbjct: 207 K-FIKLIPKDGYLVAYGEDKNIQSIIKEA---NCNVITYGINSGDIQAHNIEYDEKACGN 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +    K F     +PG+  + N+L +  + +A  +    ++E +E       RFE  
Sbjct: 263 FDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    +  DYAH    +   L   +     ++  VF                   D 
Sbjct: 323 GCKNN-ITVIDDYAHHPTEISATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTKCFDN 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIR-TAIEMLNKQ 459
           AD  I+ D     E    I +  + G            F +  +    I+   IE     
Sbjct: 382 ADEIILADIYAAREKDTGIISSDMLGDKLRDRGLKCTNFHKFDD----IKNYLIENAKDG 437

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 438 DLILTVGAGD 447


>gi|92116836|ref|YP_576565.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter hamburgensis
           X14]
 gi|122418259|sp|Q1QNU2|MURC_NITHX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91799730|gb|ABE62105.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter hamburgensis
           X14]
          Length = 467

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/419 (19%), Positives = 137/419 (32%), Gaps = 49/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVS+A    +          I VV        L   +         +A+ GT GK
Sbjct: 66  GADVLVVSTAIRRDNPELMAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +   +G     +     I+++  + RL     + +    S           
Sbjct: 119 TTTTSMVAALLD-AGDFDPTVINGGIINAYGTNARLGAGEWMVVEADESD---------- 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+  +H+D+ +T  A  +A  R F E +P    A++
Sbjct: 168 ----------GTFLKLPTDVAIVTNVDPEHLDHFKTFDAVQDA-FRSFVENVPFYGFAVM 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
             D    + ++ R  +          Q     L  +          +    +  D     
Sbjct: 217 CIDHPVVQSMVGRIEDRRIVTYGENPQADA-RLVDLAPNGGGSHFKVVFRNRKTDAAHEV 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG     NA  A  +   +GI  A + + +     V  RF   G    G  I 
Sbjct: 276 SDLVLPMPGRHNALNATAAIAVAHELGIPDATIRKAIAAFGGVKRRFTKTGEW-NGVTII 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +LK  R  T G+++ V                    + AD  +V +  
Sbjct: 335 DDYGHHPVEIAAVLKAARESTGGKVVAVVQPHRYTRLQSLFEEFCTCFNDADTVVVAEVY 394

Query: 420 PRSEDP-EKIRAEIIHGIPGFIEKGNRI-------EAIRTAIE-MLNKQDVLVVAGKGH 469
           P  E P   I  +  H + G    G+R         A+   I  +    D +V  G G+
Sbjct: 395 PAGEAPIAGIDRD--HFVLGLRAHGHREVVPLQEPAALAGVIAGLAKPGDYVVCLGAGN 451


>gi|150014970|ref|YP_001307224.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
 gi|189028985|sp|A6LPI8|MURC_CLOB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149901435|gb|ABR32268.1| UDP-N-acetylmuramate--alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 459

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 151/441 (34%), Gaps = 48/441 (10%)

Query: 51  GNKEDGHLFIPQAI-----AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRK 100
           G    G  F   AI     + GAE  +     ++ +     ++A I S+ P L+    + 
Sbjct: 34  GYSVSGSDFKDSAIIDKLRSSGAEIYIGHRRENINNVDLVVYTAAIPSDNPELLEAKEKN 93

Query: 101 FLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
              +  +   G+  +     +A++GT GK++  S +  I      +              
Sbjct: 94  IALMDRAEFLGQIMKGHKYSVAISGTHGKTTCTSMLSHI--TLADNLDPTILVGGELDAI 151

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
             N     S  +L +A  Y  S                           G   N+  DH+
Sbjct: 152 GGNFRIGNSEYFLTEACEYKRSF-------------------LKFPPYVGIILNIDSDHL 192

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DY++      +  ++ F  L+P++   + YADD    E++       C  LS G+     
Sbjct: 193 DYYKDIDEIADTFLQ-FSRLIPEDGYLVGYADDQRVNEILSE---TNCNTLSYGFSDNAN 248

Query: 278 HLKKVCAIHNKQQVTISV--EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              K    +     T  V  +G + F+    +PG+  + NAL +  + +   I +  ++E
Sbjct: 249 LTAKNIHFNTNGCATFDVYKDGNNLFNITLNVPGKHNILNALASICVSLIFNISNDCIIE 308

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L        RFE+ G    G  +  DYAH    ++  L   + +   +   +F      
Sbjct: 309 GLSNCKGAHKRFEYKG-KLNGVTVIDDYAHHPTEIKATLSTAKQMNHNKTYCIFQPHTYT 367

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEA 448
                        + AD  I+ D     E        +++   + +     I   +  EA
Sbjct: 368 RTKALFDEFTECFNDADELILMDIYAAREKNTGLVSSDELGDALRNKGLKCINVHSHDEA 427

Query: 449 IRTAIEMLNKQDVLVVAGKGH 469
           +      L   D+L+  G G 
Sbjct: 428 LNYVKSKLVSGDLLLTVGAGD 448


>gi|323137892|ref|ZP_08072967.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242]
 gi|322396895|gb|EFX99421.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242]
          Length = 469

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 145/432 (33%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A   G A  +VVS+A    +          + VV        L   +      
Sbjct: 58  GHD----AKNLGDAAVVVVSTAIKRDNPELAAAREKRLPVVRRAEMLAELMRLKQC---- 109

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +    GL    I     I+++  + RL     + +    
Sbjct: 110 ---VAIAGTHGKTTTTSLVATLLDAGGLDPTVING-GIINAYGTNARLGAGEWMVVEADE 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S                          +       TN+  +H+D+  T  A   A  R F
Sbjct: 166 SD--------------------GTFLKLPADVAIVTNIDPEHLDHFHTFDAIKEA-FRNF 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            E LP    A++  D    +E++ R  +   RV++ G      + L  V       +  +
Sbjct: 205 IENLPFYGFAVMCLDHPTVQELVGRIEDR--RVITYGENPQADVRLLDVNLEGGVSRFNV 262

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +  +         + + P+PG     NA  A  +   +G+    + + L     V  RF
Sbjct: 263 LLRDRKTAQATYLENLVLPMPGHHNALNATAAITVAYQLGLSPDQIRKALAGFGGVKRRF 322

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              G +  G +++ DY H    +  +L+  R  T G+++ V                   
Sbjct: 323 TRTG-DWNGVQVFDDYGHHPVEIAAVLRAARASTKGKVVAVMQPHRFTRLQSLFDGFSTC 381

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLN 457
            + AD+ I+ D  P  E P  I+      +   I       A+             E++ 
Sbjct: 382 FNDADVVIIADVYPAGEQP--IQGVDRDALVNAIRAHGHRRAVGLPSPEVLPAMVREIVA 439

Query: 458 KQDVLVVAGKGH 469
             D +V  G G+
Sbjct: 440 PGDYVVCLGAGN 451


>gi|325109905|ref|YP_004270973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970173|gb|ADY60951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
          Length = 473

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/422 (20%), Positives = 157/422 (37%), Gaps = 39/422 (9%)

Query: 3   LQD---LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           L+D   ++     ++  QL           +   S DSR +  G +F A+ G   DGH F
Sbjct: 5   LRDTVLMMPTTLQKITQQLCGRSAGSPNSNVLGHSIDSRTLNPGDVFWALPGRNCDGHQF 64

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  A  +GA A VVS   + +          P + V++    L+  +          ++ 
Sbjct: 65  VTAAFEKGAAAAVVSQPVTREAG--------PCIQVEDVAAALAEASFEHRNSLEALMIG 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+ GK++    +  +  ++         T T S    +NRL  P        L    +
Sbjct: 117 LTGSVGKTTTRQMLHAVLSKA--------YTGTASRENFNNRLGVPLS-----LLGISEA 163

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS+ G      + ++      T +   H+D   + +   + K  LF+ L P
Sbjct: 164 DEYAVIEMGASAQGEIGALGELVQPEIALLTQIAPAHLDGFGSIEGVISGKSELFDNL-P 222

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   A++         + +R H+   RVL+VG QG    +       +  Q+    +G  
Sbjct: 223 ESGLAVLPEHLYVMPAIRRRIHS---RVLTVG-QGPSADICLNNIRLDSGQLKFECDGDS 278

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F      PG+    +A +   +   +G+ +A +   LE    V GR            + 
Sbjct: 279 F--RMNAPGKHFASSAGLCVAIARELGLTTAQIQAGLENFSPVEGRCCRRMIGDW--TVL 334

Query: 360 VD-YAHTSNSLEMIL-KNIRTITSGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIA 413
            D Y  +  S+   L   ++T  SG  I + G     G       R +  ++A    D  
Sbjct: 335 DDTYNASPISMSAGLVSLLQTSVSGPRIAILGDMLCLGEHAKYYHRKLGQEVARTGIDYL 394

Query: 414 IV 415
           +V
Sbjct: 395 LV 396


>gi|261876162|ref|YP_697180.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           ATCC 13124]
 gi|255529905|gb|ABG83104.2| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens ATCC
           13124]
          Length = 466

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 143/426 (33%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 62  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 121

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 122 N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 174

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 175 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKDINHIKDT-F 214

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +         
Sbjct: 215 KQFVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNIEFNEKGCAT 271

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 272 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   +I+ VF                   D 
Sbjct: 332 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDD 390

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 391 CDELVLMDIYAAREKDLGEINSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLL 450

Query: 464 VAGKGH 469
             G G 
Sbjct: 451 TVGAGD 456


>gi|168205753|ref|ZP_02631758.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|168217610|ref|ZP_02643235.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
 gi|189029222|sp|Q0TMG0|MURC_CLOP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170662717|gb|EDT15400.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|182380340|gb|EDT77819.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
          Length = 457

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 143/426 (33%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 53  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 113 N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 166 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKDINHIKDT-F 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +         
Sbjct: 206 KQFVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNIEFNEKGCAT 262

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   +I+ VF                   D 
Sbjct: 323 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDD 381

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 382 CDELVLMDIYAAREKDLGEINSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLL 441

Query: 464 VAGKGH 469
             G G 
Sbjct: 442 TVGAGD 447


>gi|332291225|ref|YP_004429834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169311|gb|AEE18566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 424

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 130/360 (36%), Gaps = 33/360 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V +D+R +Q   I++++ G+  +G+ F  QA+  GA   V+       D++       
Sbjct: 14  NGVCTDTRSLQKNQIYISLKGDNFNGNKFAKQALKDGARLAVIDEKEYEDDYT------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+  K L   A+         I+ +TG++GK++    +  +     ++    G  
Sbjct: 67  --VLVDDVLKTLQQLANYHRNYLNLPIIGLTGSNGKTTTKELINAVLSEKYVTVATKG-- 122

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +       P+ L   LS  S+  +  V + A+  G      +  +   G  T
Sbjct: 123 --------NLNNHIGVPLTL---LSMDSTTEIGIVEMGANHQGEIAMLCEIAQPNFGYIT 171

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L+  L   E  A I   D   K  +++A     +    
Sbjct: 172 NFGKAHLEGFGGFEGVIKGKSELYNYLRDNEEMAFINDTD---KLQVEKATGITLQTF-- 226

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G       +  +   + + +S +         L G +   N  VA  +     +   
Sbjct: 227 ---GSTESKYPISLVDGSESLKLSFKNTT--INSQLIGIYNYSNIAVAIAMGTYFDVSID 281

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   +E+      R + +  +S    I   Y     S+   L+N++   +  I  +   
Sbjct: 282 QIKSGIEEYIPANNRSQIIKKDSYRI-ILDAYNANPTSMAAALENLKATNTTTIAFIGNM 340


>gi|318060323|ref|ZP_07979046.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actG]
 gi|318077690|ref|ZP_07985022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actF]
 gi|333023747|ref|ZP_08451811.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
 gi|332743599|gb|EGJ74040.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
          Length = 470

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 92/431 (21%), Positives = 156/431 (36%), Gaps = 43/431 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A+   A+VVSSA    +          I VV  +    +L A   
Sbjct: 54  GATVHIGHD--AAHLAEDTSAVVVSSAIRADNPELVRARERGIPVVHRSDALAALMAGTR 111

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   LA+ GT GK++  S +       G   S+ IG                    
Sbjct: 112 P-------LAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIG-----GDLDAPGSNAHHGTG 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +  A +  S +                              N+  DH   + + +  + 
Sbjct: 160 EIFVAEADESDRSFHTY-----------------APEVAVVLNVELDHHANYASIEEIYE 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVG-YQGKFIHLKKVCAIH 286
           +    F   +      +I AD   ++E+ +R  + A  RVL+ G  +   + + KV    
Sbjct: 203 S-FETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRVHKVTPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+S+ GK   F   +PG    +NA+ A    +++G+    +   L     V  R 
Sbjct: 262 LTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  G  + G ++   YAH    +   L+ +R    GRI+VVF         +       A
Sbjct: 322 QLKGEAA-GVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRTQELGKEMGQA 380

Query: 407 LDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGF----IEKGNRIEAIRTAIE-MLNKQD 460
           L LAD ++V D  P  EDP E + +E+I          +   +  + +  A+  M    D
Sbjct: 381 LALADSSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGD 440

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 441 LVLTMGAGDVT 451


>gi|298293097|ref|YP_003695036.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506]
 gi|296929608|gb|ADH90417.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506]
          Length = 469

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 146/438 (33%), Gaps = 57/438 (13%)

Query: 50  VGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            G K      I  A     GA  +VVSSA    +          + VV        L   
Sbjct: 51  KGIKVH----IGHAAGNIDGAAVLVVSSAIRRDNPELVAARAKRLPVVRRAEMLAELMRL 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           +         +A+ GT GK++  S V  +    G     I     I+++  + RL     
Sbjct: 107 KSC-------VAIAGTHGKTTTTSLVATLLDAGGFDPTVING-GIINAYGTNARLGDGEW 158

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + +    S                          + +     TN+  +H+D+ +T  A  
Sbjct: 159 MVVEADESD--------------------GTFLKLPVEVAIVTNIDPEHLDHFKTFDAVQ 198

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIH 286
            A  R F + LP    A++  D    ++++ R  +   RV++ G      + L  +    
Sbjct: 199 AA-FRSFIDNLPFYGFAVMCTDHPVVQDLVGRVEDR--RVITYGENPQADVRLVDLDLRG 255

Query: 287 NKQQVTISVEGKDFDFL-------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              +  +   G++ D          P+PG     NA  A  +   +G     +   L   
Sbjct: 256 GVCRFNVLFRGRNGDVRHELRDLVLPMPGRHNALNATAAIAVAHELGASDEQIRSALAGF 315

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  RF   G    G  I+ DY H    +  +L+  R  T G++I V            
Sbjct: 316 GGVKRRFTRTG-EVNGVTIFDDYGHHPVEIAAVLRAARASTEGQVIAVVQPHRYTRLQSL 374

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRI-------EAIRT 451
                   + AD  IV D  P  E P   I  +  H +     +G+R        +A+  
Sbjct: 375 FDQFATCFNDADHVIVADVYPAGEAPIPGIDRD--HLVEALRARGHRSVVALPGPDALAG 432

Query: 452 AIEM-LNKQDVLVVAGKG 468
            ++     +D +V  G G
Sbjct: 433 IVKTFAKPEDYVVCLGAG 450


>gi|289570275|ref|ZP_06450502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
 gi|289544029|gb|EFD47677.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
          Length = 276

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 58  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 114

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 115 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 175 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 234

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +   G+FTNL RDH+D+H +   YF AK  LF+
Sbjct: 235 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 267


>gi|319764376|ref|YP_004128313.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|330826595|ref|YP_004389898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
 gi|317118937|gb|ADV01426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|329311967|gb|AEB86382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
          Length = 463

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 166/480 (34%), Gaps = 47/480 (9%)

Query: 1   MKLQ---DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           M L+   DL+    P      +   +      +  V +D+R + AG +FVA+ G + D +
Sbjct: 10  MTLRQAFDLLRARIP------AARLVGDGATPLMRVHTDTRTLAAGDLFVALKGERFDAN 63

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
             +PQA          + A +     A   +  P + V +T   L + A+    +    +
Sbjct: 64  SLLPQAR--------AAGAAAAIAHGALEAAGLPGVEVPDTLAALGVLAAGWRAQRTLPL 115

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GK++V   +  + +            +T  +F  D  L            + +
Sbjct: 116 VAVTGSNGKTTVTQMIASVLRA----WKGDAALATQGNFNNDVGLPLTLLRLRPAHEAAV 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+ H    A   G+        +       N  R+H+++  T +A       +   L
Sbjct: 172 VELGMNHPGEIAYLAGIA-------RPTVALVNNAQREHLEFMHTVEAVARENGSVLAAL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+  A DA++    + A    C  ++ G     +             + +    
Sbjct: 225 -CAGGVAVFPAADAFTPLWRELAGAHRC--ITFGGDAADVRCAHAQWQDGAWHLRVQTPQ 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-- 355
             FD L  + G   V NAL AA   +A G   A +   L     V GR        +G  
Sbjct: 282 GAFDTLLSIAGRHNVTNALAAAACALAAGAPLAAIARGLAAFEPVKGRSRAFAVRCQGRA 341

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADI 412
             +  D Y    +S+   +  +  +   R++V+   G    QG       G  A      
Sbjct: 342 IAVVDDSYNANPDSVRAAIDVLAELPGPRLLVLGDMGEVGGQGPQFHAEAGAHARSRGIE 401

Query: 413 AIV--------TDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            +                ED   + A +     G+   + KG+R   +   ++ + ++D 
Sbjct: 402 QVFALGALSAHVAGARHFEDMASLIAAVRAQLPGVGSVLVKGSRFMKMERVVQAIEEEDA 461


>gi|148273044|ref|YP_001222605.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830974|emb|CAN01919.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 469

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 172/475 (36%), Gaps = 46/475 (9%)

Query: 6   LIYKDFPELINQ-LSIFPMQWRERKINEVS-SDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L   +  E ++  L +      +  ++ V  +DSR I  G IFVA  G + DGHLF P A
Sbjct: 4   LTLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIARGGIFVAKPGEETDGHLFAPAA 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILA 119
           +  GA  ++V     L           P ++V +    L   A  +  +        ++A
Sbjct: 64  VEAGAALLLVERELDLP---------VPQVLVPDVVDALGRLAHEVVARVRALGDLRMVA 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG++GK++  + +  I    G +   +   +            T +  +L         
Sbjct: 115 VTGSNGKTTTKNLLHAILSTQGETVSPVASFNNEVGAPLTMLKVTRTTRFLVAE------ 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  + AS  G     +   K   G    +G  H       +     K  + ++LLP
Sbjct: 169 -------MGASGLGEITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLP 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV-EG 297
           ++  A++ ADD     V   +      VL  G   +  +    + A       T+ + +G
Sbjct: 222 ED-TAVLNADDP---RVSSMSDKTEAPVLWFGRDARAAVRATDIVASAAGTTFTLHLPDG 277

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +    F + GE  V NAL AA    A+G+D   ++  L+ +     R+        G  
Sbjct: 278 SERPVSFRVLGEHHVTNALAAAAGAWALGVDGDAIVSALQTVQRA-ERWRMEVLGGNGVT 336

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-------KIALDL 409
           I  D Y  + +S+   L+ +  I       V   G   + G+             + L++
Sbjct: 337 IINDAYNASPDSMAAALRTLAQIRGPEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNI 396

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             + +V     R    E I      G   F E  +  EA      +L   D+++V
Sbjct: 397 GQLVVVGRP-ARRLHLEAIAQGSWDGESIFAE--DAAEAREILDRILRDGDLVLV 448


>gi|316984925|gb|EFV63881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
 gi|325140931|gb|EGC63438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis CU385]
 gi|325199604|gb|ADY95059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
          Length = 439

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 138/390 (35%), Gaps = 34/390 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ + +DSR I+AG +F A+ G + D H F+                 +        R
Sbjct: 6   KPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVED------------VLAAGAAAVVVSR 53

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +       L VD+T   L   A          +  +TG+ GK++V   +  + +R    
Sbjct: 54  EDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRR---R 110

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLDGI 202
                  +T  +F           I L   L  L+ +     + +  +  G         
Sbjct: 111 FGDDAVLATAGNFNNH--------IGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIA 162

Query: 203 KLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           K  A    N  R H+            AK  +++ L   +  A+I  +DA          
Sbjct: 163 KPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGL-CSDGIALIPQEDANMAVFKTATL 221

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N   R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L
Sbjct: 222 NLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAAL 279

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +A G+    V E L+    + GR   V +  +G  +  D Y    +S++  +  +  + 
Sbjct: 280 ALAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIKGATLIDDTYNANPDSMKAAIDVLARMP 338

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           + RI V+   G   + G+       A   A
Sbjct: 339 APRIFVMGDMGELGELGEDEAAAMHAEVGA 368


>gi|294791068|ref|ZP_06756226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
 gi|294458965|gb|EFG27318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
          Length = 540

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 113/524 (21%), Positives = 202/524 (38%), Gaps = 50/524 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++LI++D     +   I+P +        +S D+R +    +     G +     ++ +
Sbjct: 32  LKELIHQD--SWTDTPEIWPAETAGMTFTRISYDTRQVDDHTLLFC-KG-RFHS-SYLDK 86

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   G    V  + YS    +         ++V + +K +SL +S  Y ++P   + V G
Sbjct: 87  ADQDGLPCYVAENDYSQVTRAIG-------IIVTDIKKAMSLLSSAFY-RYPAKEITVIG 138

Query: 123 TSGKSSV---ASFVQQICQR-SGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176
            +G       A F   I    +G  +  +             ++ LTTP  + L + +  
Sbjct: 139 ITGTKGKTTTAYFTHAILNAYTGGKAALLSSVDNCLDGHTFVESDLTTPESLDLFRMMRQ 198

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234
             SQG+ ++ +E SS      R+ G+    G+F N+  DHI    H + + YF  K ++ 
Sbjct: 199 AVSQGMKYLIMEVSSQAYKVDRVYGLTFALGAFLNISPDHISPIEHPSFEDYFYCKRQIA 258

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-------GYQGKFIHLKKVCAIHN 287
                  S  ++ AD  +S  V + A   G  V +                         
Sbjct: 259 LN----SSALVLNADMVHSSLVTQDAGLRGIPVTTFRLENSNADRTADLTVTSIREDKGE 314

Query: 288 KQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL--EHLEKLHVVPG 344
             Q    ++GKD   F   +PG+F   NA  A  L  A G+D       + L+ +  V  
Sbjct: 315 SPQFQARLKGKDLGRFSLSIPGDFNGANAAAALALISACGLDLTNPHVQQALQAMEKVTI 374

Query: 345 --RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKR 399
             R E   +  +     VDYAH   S  ++L  I         RII+V G  G++   +R
Sbjct: 375 AGRMEIFSSPDKSLVGIVDYAHNGVSASVLLDYIDQAYGRLNPRIILVTGSAGNKAYDRR 434

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAI-- 453
             + + A +     I T+++  +E    I  ++   +     +     +R +A++ A   
Sbjct: 435 QEIVEAAQNRISRFIFTEEDTDTEPIIDICQQMDQAVSNPQVEHGIILSRSQALQEAFRD 494

Query: 454 --EMLNKQDVLVVA--GKGHETVHIVTNGEKKMSVDCDIIREIL 493
             E   +    V+A  GKG+E      N       D  I++ +L
Sbjct: 495 GKEHARQGKTTVIAAIGKGNERWIKHLNKHVVYQGDDRIMKGLL 538


>gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
 gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
          Length = 823

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 143/370 (38%), Gaps = 26/370 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+++ +    +  R+  I+ + +DSR +      +F A+   + DGH +IP+  A+G 
Sbjct: 5   IEEIVSVVGATRIGERQASISWILTDSRSLCFPEETLFFALKAKRNDGHKYIPELYARGV 64

Query: 69  -EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              +V      +++ +     +   LVV N  K L   A +   ++   ++ +TG++GK+
Sbjct: 65  YNFVVAEVPEEMKNCT-----DVNFLVVGNVLKALQRLAGKHREQYQVPVIGITGSNGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+                 S  + ++++  P  +++    + L          
Sbjct: 120 VVKEWLYQLLS--------PDKRIIRSPRSYNSQIGVPLSVWMMDEHTELGIFEA----- 166

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +     I+   G  TN+G  H +   + Q     K+ LF+E        +  
Sbjct: 167 GISEMGEMETLEPIIRPTIGVLTNIGGAHQENFSSLQDKCMEKLLLFKEC----DVIVYN 222

Query: 248 ADDAYSKE-VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            D+   ++ V K    A     S+    + + ++K+        +     G   +F  P 
Sbjct: 223 GDNELIRDCVSKSLFTAREIAWSMKDPERPLFIEKIEKDAAGTTIKYRYLGFFKEFRIPY 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             +  + N+L    + + + + + ++ E +  L  V  R E     +    I   Y    
Sbjct: 283 IDDASIENSLHCLAVALYLMVPTEVIAERMAHLEPVAMRLEVKEGKNGCVLINDSYNSDF 342

Query: 367 NSLEMILKNI 376
            SL++ L  +
Sbjct: 343 ASLDIALDFM 352


>gi|210623279|ref|ZP_03293696.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
 gi|210153680|gb|EEA84686.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 90/425 (21%), Positives = 151/425 (35%), Gaps = 52/425 (12%)

Query: 66  QGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116
           QGAE  +      +S   ++  ++A I  +   L+    +  L +  +   G+      N
Sbjct: 44  QGAEIFIGQRKENISDDVNMVVYTAAIHPDNEELMAARKKNKLIVNRAAFLGQIMREYKN 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKAL 174
            +AV+GT GK+S  S +  I + + L    +  G  S I    +                
Sbjct: 104 SIAVSGTHGKTSTTSMLSAIFEYADLDPTILVGGNLSMIGGNVKIGHSNHFITEACEYVD 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S+L+                                N+  DH+DY         A    F
Sbjct: 164 SFLN-----------------------FNPKISIVLNIEEDHLDYFSGIDEI-KASFNKF 199

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVT 292
            +LLP +   II  DD  + +++   ++    V+  G       + K             
Sbjct: 200 GKLLPPDGYFIINGDDENTADIL---YDVKATVIKYGSNKDNDAVIKNIEFDELGCGIFD 256

Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G+D   F   + G   +YNA+ A    I  GID   +  +++K   V  RFEF G 
Sbjct: 257 LVYNGEDLGKFELSVRGLHNIYNAVAAIITSIVSGIDVETIKRNIKKYRGVGRRFEFKG- 315

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G  I  DYAH    L+  L   + I   R+  +F                 A   AD
Sbjct: 316 KYNGATIVDDYAHHPTELKSTLSTAKRIKKNRLWCIFQPHTYSRTKSLLNEFSDAFFAAD 375

Query: 412 IAIVTDDNPRSE-DPEKIRA-EIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             IVTD     E DP  I + +++  +        +I++ + I  +    + +   D ++
Sbjct: 376 KVIVTDIYAARETDPGDIHSTDLVEKLYHNNIDAKYIKEFDDI--VEYLADNVEPDDFVI 433

Query: 464 VAGKG 468
            AG G
Sbjct: 434 TAGAG 438


>gi|168213417|ref|ZP_02639042.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
 gi|170715048|gb|EDT27230.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
          Length = 457

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 143/426 (33%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 53  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 113 N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 166 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKDINHIKDT-F 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +         
Sbjct: 206 KQFVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNIEFNEKGCAT 262

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   +I+ VF                   D 
Sbjct: 323 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDD 381

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 382 CDELVLMDIYAAREKDLGEINSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLL 441

Query: 464 VAGKGH 469
             G G 
Sbjct: 442 TVGAGD 447


>gi|332283266|ref|YP_004415177.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427219|gb|AEC18553.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
          Length = 468

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 98/434 (22%), Positives = 148/434 (34%), Gaps = 55/434 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA AIV S+A S  +          I VV      L+       G    
Sbjct: 56  GHD---AANIRGAGAIVTSTAVSADNPEVLAARAARIPVVPRALM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +          + PT  I                L  A +
Sbjct: 108 --IAVAGTHGKTTTTSLVASVLAA-----GDLDPTFVIGGR-------------LNSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + VEA     D   L+ +  +    TN+  DH+D +    A   +    F 
Sbjct: 148 NARLGQGEFIVVEADES--DASFLNLL-PVMCIITNIDVDHMDTYGHDVARLKSAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++ +DD   +E++         V + G + +       V A     +  + 
Sbjct: 205 QRLPFYGTAVLCSDDPNVREIIPFVSRP---VTTYGIESEAQVRALNVRADGTLMRFDVQ 261

Query: 295 VEGKD-----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +G             LPG   V NAL A  +   +G+  A ++E L   + V  RF  V
Sbjct: 262 RQGATGALPPMTVSLNLPGHHNVLNALAAIAVATELGVPDAAIVESLAAFNGVGRRFTQV 321

Query: 350 G----TNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPI 401
           G       +GG    +  DY H    +   L   R     R IV+ F             
Sbjct: 322 GDFPVAAQQGGGTYTVIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFE 381

Query: 402 MGKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                L  AD  ++TD  P  E P          RA  + G    +   +  E  +T  +
Sbjct: 382 DFVRILGQADAVLLTDVYPAGEQPLIAADGRALTRALRVAGKVEPVFVEDVAELPQTIRD 441

Query: 455 MLNKQDVLVVAGKG 468
                DV+V+ G G
Sbjct: 442 FARNGDVVVIMGAG 455


>gi|302388641|ref|YP_003824462.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302199269|gb|ADL06839.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 875

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 155/423 (36%), Gaps = 51/423 (12%)

Query: 100 KFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              ++       + P   ++AVTGT+GK++    V  I    GL    +G T T   +  
Sbjct: 462 AARAIVDMLFPQEPPRFPLVAVTGTNGKTTTVRMVANILSAHGLK---VGMTCTDGVYVG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              +          A   L    V    +E +  GL +  L       G  TN+  DH+ 
Sbjct: 519 SMCIRRGDCSGPESAKMVLLDPSVEAAVLEIARGGLIRGGLAYEYADVGIITNITGDHLG 578

Query: 219 YHQ--TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
                T +     K  L  E +  E  A++ ADD  S EV KR  +   RV+    Q   
Sbjct: 579 QDGVNTLEDLMFVKS-LVAEQVKPEGYAVLNADDITSVEVKKRVKS---RVIFFSLQEDN 634

Query: 277 IHLKKVCA-----IHNKQQVTISVEG---------KDFDFLFPLPGEFQVYNALVAAGLC 322
           + L+K  A     ++ K       EG          D            V NAL AA   
Sbjct: 635 LVLRKHIAEGGRGVYVKDGFIFFQEGDKSVSLMKVADIPAAMNGRARHNVQNALAAAAAG 694

Query: 323 IAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            A+ + +  +   L          PGR   +   +   RI +DY H   +LE I+   R+
Sbjct: 695 WALDVPAETIRRALSDFRCDESTNPGRLNIISEGN--IRIILDYGHNPAALEAIIGTARS 752

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIP 437
           +   R++ V    GDR       +G++A       I+ +D +PR   P ++ + ++ G  
Sbjct: 753 MNPARMVGVIASPGDRRDEAIVKLGQVAGRGFQRLIIKEDEDPRGRKPGEVASLLLEGAL 812

Query: 438 GFIEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
               K ++I       EAI  A+E     D++V+               +      + IR
Sbjct: 813 SAGLKKDQIDVILKEEEAITFALENAQDGDLIVI-------------FYEHYDSAIEAIR 859

Query: 491 EIL 493
           E L
Sbjct: 860 ESL 862


>gi|332974212|gb|EGK11145.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella kingae ATCC 23330]
          Length = 468

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 134/421 (31%), Gaps = 51/421 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +V S+A + ++          I V+      L+       G      +A+ GT GK
Sbjct: 64  GAEVVVTSTAIAHENPEVQAALAQHIPVIPRA-MMLAELMRLKDG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S    I   +G   +F IG   T +                   ++       + +
Sbjct: 117 TTTTSLTASILGAAGLDPTFVIGGKLTAAGTNAKLGKGEY-------LVAEADESDASFL 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH+D +       +     F   +P    A 
Sbjct: 170 Y---------------LSPVITVITNIDEDHMDTYGQDVNRLHQAFIDFVHRMPFYGKAF 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFD 301
           +  D  + + ++ +         ++      I+   V     + Q T++   +     FD
Sbjct: 215 LCIDSEHVRTILSKIKKPFA-TYAIDNDQADIYATNVQTNGAQMQFTVNFRHESSLQSFD 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGR 357
               LPG   V NAL + G+ +      A + + L     V  RF+  G           
Sbjct: 274 VTLNLPGRHNVLNALASIGVALECKAPVAAIQQGLANFAGVGRRFQSYGEIALPQGGKAL 333

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    +   +   R    + R+++ F                  L  AD  ++T
Sbjct: 334 VIDDYGHHPVEMAATIAATRGAYPNNRLVLAFQPHRYTRTKDLFYQFVDVLSTADRVVLT 393

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQDVLVVAGK 467
           +     E P  I     H +   +     +E I  A         + +L   DV++  G 
Sbjct: 394 EVYAAGEAP--IPDANAHSLANAVRARGLVEPIYCADINALPSILLSVLKDGDVVLTMGA 451

Query: 468 G 468
           G
Sbjct: 452 G 452


>gi|182420067|ref|ZP_02951301.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237669521|ref|ZP_04529501.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376104|gb|EDT73691.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237654965|gb|EEP52525.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 461

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 151/444 (34%), Gaps = 53/444 (11%)

Query: 51  GNKEDGHLF-----IPQAIAQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTR 99
           G K  G  F     + +  A+GAE  +      +     L  ++A I S+ P ++    +
Sbjct: 34  GFKVSGSDFKDSPIVEKLRAEGAEIYIGHNKDNIKKDVDLVVYTAAIPSDNPEILAAKDQ 93

Query: 100 KFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTIS 154
             L +  +   G   +     +AV+GT GK++  S +  +   + L    +  G    I 
Sbjct: 94  NILLMDRAEFLGHIMKGHKYNVAVSGTHGKTTCTSMLSHVTLAANLDPTILVGGELDVIG 153

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
              +       S  +L +A  Y                   +          G   N+  
Sbjct: 154 GNFR----IGNSEYFLTEACEY-------------------KKSFLKFPPYVGIILNIDA 190

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D ++      +  M  F +L+PK+   + Y DD   KE++  A    C  +S G+  
Sbjct: 191 DHLDCYKDINEIADTFMA-FSKLIPKDGYLVGYGDDERVKEILSNAE---CNTVSYGFND 246

Query: 275 KFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                 K    +     +  V   + K F     +PG+  V NAL +  + +   I    
Sbjct: 247 DSDVTAKNITFNKMGCASFDVYKSDKKLFSLTLNVPGKHNVLNALASICVSLIFNIADKD 306

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
            +E L K      RFE+ G    G  +  DYAH    ++  L   + I   ++  VF   
Sbjct: 307 TVEGLSKCKGAHKRFEYKG-ELNGVTVIDDYAHHPTEIKATLNTAQKIDHNKVYCVFQPH 365

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNR 445
                           +  D  I+ D     E        E++   I           + 
Sbjct: 366 TYTRTKTLFDEFTHCFNECDELILMDIYAAREKDTGLVSSEELGNAIRSTGVNCTNVHSH 425

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGH 469
            EA+      L   D+L+  G G 
Sbjct: 426 DEALEYVKSKLGDGDLLLTVGAGD 449


>gi|313667811|ref|YP_004048095.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica ST-640]
 gi|313005273|emb|CBN86706.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica 020-06]
          Length = 452

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSVGKTTVKEMLAAVLRR---RFGNDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R HI            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALANNAMRAHIGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGIALIPQEDANLAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGNERAAVVLPVPGRHNVHNAAAAAALALAAGLGLNDVAEGLKGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
 gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
          Length = 857

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 144/403 (35%), Gaps = 29/403 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +        + KI  V +DSR +      +F A+   + DGH +IP+   +G 
Sbjct: 37  IEKVTTLIGARRFGASDAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGV 96

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV+    +    AT  +    L V N+ + L   A R   +    I+ +TG++GK+ 
Sbjct: 97  RNFVVT---EVPADYATEYAEANFLKVVNSLEALQRLAERHRDEFNIPIVGITGSNGKTM 153

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  ++L    + +           
Sbjct: 154 VKEWLNQLL--------CDDMFITRSPRSYNSQVGVPLSVWLLNEHTQVGIFEA-----G 200

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+      TNLG  H +   +++     K+ LF          +   
Sbjct: 201 ISQPGEMLALRDIIQPTIAVLTNLGDAHQENFISKEMKCKEKLILF----HDAKTVVYNG 256

Query: 249 DDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD      +    +        S+  +     +K V        VT   +G +  +  P 
Sbjct: 257 DDPIVNGCVNELEDFKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPF 316

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
             +  V N+   A + + +G+   ++ E +++L  +  R E V     G  +  D Y   
Sbjct: 317 IDDASVTNSFACAAVALTLGVGVDVLDERMQQLEPIAMRLE-VKQGQHGCTLINDSYNSD 375

Query: 366 SNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            NSL++ L  +         R  ++             +  ++
Sbjct: 376 INSLDIALDFMNRRPDHQGRRHTLILSDIYQSGMTTDELYQEV 418


>gi|303246308|ref|ZP_07332588.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
 gi|302492371|gb|EFL52243.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
          Length = 470

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 150/413 (36%), Gaps = 48/413 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A + ++          I V+    + L+       G      +AV GT GK+
Sbjct: 78  ADVVVKSTAVTNENPEVVAARERGIPVIPRA-EMLAELMRLRNG------IAVAGTHGKT 130

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   +G     I     ++++    RL           ++       + +  
Sbjct: 131 TTTSLLATIFTEAGYDPTVI-IGGRLNAYGAGARLGQGE-----YLIAEADESDGSFLC- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +  IA   TN+  DH+D++    A  +A    F   +P     ++ 
Sbjct: 184 --------------LSPIASVVTNVDADHLDHYADLAAIDDA-FVDFLNGIPFYGVNVVC 228

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            DD     ++ R +     +L+ G   +     K+       + +++++GKD  +     
Sbjct: 229 LDDPGVARLLPRVNRP---ILTYGVTSQARLRGKILETGAASRFSVTLDGKDLGEMRLAH 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A GL +  GI+  ++   L K   V  RFE  G    G  +  DY H  
Sbjct: 286 PGRHNVLNALGAIGLSLEAGIELPVIAAALAKFGGVGRRFERKG-ERNGVVVVDDYGHHP 344

Query: 367 NSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +   L   RT+   R +VV F                   + AD  ++T+  P SE P
Sbjct: 345 AEIRATLATARTVYPDRRLVVAFQPHRFSRTKALFGDFCTCFEAADELLLTEIYPASEAP 404

Query: 426 ----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     + IR      +  + +     EA+     ++   D+L+  G G
Sbjct: 405 IPGVSGESLAQGIRQVSKTNVSYYRDFPAMEEALP---GIVRPGDLLLTLGAG 454


>gi|182624328|ref|ZP_02952113.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
 gi|177910546|gb|EDT72919.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
          Length = 457

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 143/426 (33%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 53  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 113 N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 166 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKDINHIKDT-F 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +         
Sbjct: 206 KQFVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNIEFNEKGCAT 262

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   +I+ VF                   D 
Sbjct: 323 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDD 381

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 382 CDELVLMDIYAAREKDLGEINSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLL 441

Query: 464 VAGKGH 469
             G G 
Sbjct: 442 TVGAGD 447


>gi|226323567|ref|ZP_03799085.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
 gi|225208251|gb|EEG90605.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
          Length = 470

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 82/424 (19%), Positives = 146/424 (34%), Gaps = 46/424 (10%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
             GA       A ++ D      ++A I  +         R    L  + L G+   N  
Sbjct: 63  QNGATVFYGQKASNIIDGIDLVVYTAAIHEDNEEFAEAKRRNLPMLSRAELLGQLMTNYK 122

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A++GT GK++  S +  I   + L    I     + +   + R+  P  +++ +A  
Sbjct: 123 TPVAISGTHGKTTTTSMLSHIALAANLDP-TISVGGILKAIEGNIRVGGPD-LFITEACE 180

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S                           G   N+  DH+D+ +      N+   LF 
Sbjct: 181 YTNSF-------------------LHFSPKIGIILNVDADHLDFFKDLDDIRNS-FHLFA 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +LLP+    +I  D    +E+     +  CRV++ G +    +       + +   +  V
Sbjct: 221 KLLPENGTLVINGDIDKIEEI---TSDLSCRVITFGKEASLDYSAANITYNEQGNASFDV 277

Query: 296 --EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G++       + GE  VYNAL A  +   +G+ +  +   L   H    RFE+ G  
Sbjct: 278 VKDGQNVAHLALAVGGEHNVYNALAAIAVADILGVPAETIQTGLASFHGTDRRFEYKGEV 337

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I  DYAH    +   LK+       ++  +F                 AL  AD 
Sbjct: 338 G-GVTIIDDYAHHPTEIAATLKSAAHYPHKKLWCIFQPHTYTRTKALFSEFAEALAHADH 396

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVA 465
            I+ D     E         ++   +           +   AI   +       D+L+  
Sbjct: 397 VILADIYAARETDTLGISSTQLADAVKEHGCDATYLPS-FAAIEEFVTTHCQPGDLLITM 455

Query: 466 GKGH 469
           G G 
Sbjct: 456 GAGD 459


>gi|83592285|ref|YP_426037.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
 gi|109892732|sp|Q2RVU5|MURC_RHORT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83575199|gb|ABC21750.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
          Length = 481

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 137/428 (32%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH    +A   G A+ +V+SSA    +          + VV    + L       +    
Sbjct: 59  GH----KAANLGDAQVVVISSAVKASNPEVMDARARFLPVVRRA-EMLGELMRLKW---- 109

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S V Q+   +GL    I     I +    N         + +A 
Sbjct: 110 --SIAVAGTHGKTTTTSLVAQLLDAAGLDPTVI--NGGILNARGTNAYLGTGEWMVVEA- 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                                      +       TN+  +H+D++ T      A  R F
Sbjct: 165 ------------------DESDGTFTKLPATISLVTNIDPEHLDFYGTFDKVREA-FRAF 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A +  D    + ++ +  +       +  Q   I    V       +  + 
Sbjct: 206 IHNLPFYGFACMCIDHPEVQAMIPQLQDRKIITYGLSPQAD-IRGANVTLGPRGARFDVI 264

Query: 295 VEGKDFD-------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +             P+ G   V NAL A G+   +GID A++ + L     V  RF 
Sbjct: 265 LTDRAGGGSRTIEGIRLPMYGRHNVLNALGAIGIAAEMGIDDAVIRDGLYHFEGVKRRFT 324

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G ++ G  +  DY H    +  +LK  R  T   +I V                    
Sbjct: 325 RTG-DAGGVTVIDDYGHHPVEIAAVLKAARDATEREVIAVVQPHRYSRLNSLFEDFCTCF 383

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQD 460
           + AD  +V D     E P      E +   +       +      +A+   I  +    D
Sbjct: 384 NDADQVVVADVYAAGEQPIPGASKEALAEGLKVHGHKSVHVLTNEQALPELIARIAKPGD 443

Query: 461 VLVVAGKG 468
           ++V  G G
Sbjct: 444 LVVCLGAG 451


>gi|325128832|gb|EGC51691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis N1568]
          Length = 452

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 146/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR  +AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI----LVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L + A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRDNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGIALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLN-VKAGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|222530360|ref|YP_002574242.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254763736|sp|B9MND8|MURC_ANATD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222457207|gb|ACM61469.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 455

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 153/406 (37%), Gaps = 38/406 (9%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    + +    L +    +FL L          +N++ ++GT GK++  S
Sbjct: 64  VIYTAAISKDNPELLAAKRMNLKIYERAEFLGLLMKDF-----KNVITISGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +     PT  + +F +          ++  +  YL  +   +V      
Sbjct: 119 MIGYILKKANYN-----PTVLVGAFVKQL-----GGNFVIGSKEYLVVEACEYVDS---- 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +  N+  + F + +P     ++  DD 
Sbjct: 165 -------FLKFNPTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVVNYDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGE 309
             K+++ + +     + +   +   I    +       +  +     +        +PG 
Sbjct: 217 NVKDIINQLNTQIICIST--KEKTDIFADNISCSDGYYEFDVKNNNDEILAHIKLNIPGF 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYNAL A  +   +G++S  + + L +      R E VG    G  +Y DYAH    +
Sbjct: 275 HNVYNALAAFAVASKLGVESITIEQALSEFRGASRRLEKVG-EFNGIYLYDDYAHHPTEI 333

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KI 428
           +  L  ++ I+ G+++ +F                 +L LAD  IVTD     E     I
Sbjct: 334 KATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLQLADKVIVTDVYAAREKNVFGI 393

Query: 429 RAE----IIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
            +E     +  I    E  +  E I   A++   K D++   G G 
Sbjct: 394 TSEKLYLKLKEIGIDCEYISNFEDIACYAVKEAKKGDIIATIGAGD 439


>gi|169343255|ref|ZP_02864266.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
 gi|169298553|gb|EDS80634.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
          Length = 457

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 143/426 (33%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 53  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 113 N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 166 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKNINHIKDT-F 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F  L+P +   I  ADD    EV++ A    C VL+ G     I  + +         
Sbjct: 206 KQFVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNIEFNEKGCAT 262

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   RI+ VF                   D 
Sbjct: 323 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDD 381

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 382 CDELVLMDIYAAREKDLGEINSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLL 441

Query: 464 VAGKGH 469
             G G 
Sbjct: 442 TVGAGD 447


>gi|325266252|ref|ZP_08132931.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella denitrificans ATCC
           33394]
 gi|324982214|gb|EGC17847.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella denitrificans ATCC
           33394]
          Length = 469

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 137/432 (31%), Gaps = 54/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I  GAE +V S+A    +          I V+      L+       G    
Sbjct: 56  GHT--AEHIE-GAEVVVTSTAIKADNPEVQAALAQHIPVIPRA-MMLAELMRLKDG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S    I   +G+  +F IG   T +                   +
Sbjct: 108 --IAIAGTHGKTTTTSLTASILGAAGMDPTFVIGGKLTAAGTNAKLGKGEY-------LV 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                +  +    TN+  DH+D +       +     F
Sbjct: 159 AEADESDASFLY---------------LSPVITVVTNIDEDHMDTYGQDVQRLHQAFIDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A +  D  + + ++ +         ++  +   I+   V     + Q T  
Sbjct: 204 VHRMPFYGKAFLCVDSEHVRSILPKIKKPFA-TYAIEDETADIYATNVRTNGAQMQFTAH 262

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   +FD    LPG   V NAL + G+ +        + + L     V  RF+  G
Sbjct: 263 TRHTGSVHEFDVTLNLPGRHNVLNALASIGVALECKAPIEAIQQGLANFAGVGRRFQSYG 322

Query: 351 ----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKI 405
                +     I  DY H    +   +   R    GR +V+ F                 
Sbjct: 323 NIALPSGGEALIIDDYGHHPVEMASTIAATRGAYPGRRLVLAFQPHRYTRTKDLFYQFVD 382

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEML 456
            L  AD  ++T+     E P  I     H +   +     +E I         +T + +L
Sbjct: 383 ILSTADRVVLTEVYAAGEAP--IADANGHSLANAVRARGLVEPIYCADVQALPQTLLSIL 440

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 441 QDGDVVLTMGAG 452


>gi|209963945|ref|YP_002296860.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum centenum SW]
 gi|226706326|sp|B6IRG1|MURC_RHOCS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|209957411|gb|ACI98047.1| UDP-N-acetylmuramate--alanine ligase [Rhodospirillum centenum SW]
          Length = 482

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 139/416 (33%), Gaps = 48/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V+SSA    +          + VV        L   +         +AV GT GK+
Sbjct: 68  AAVVVISSAVRTDNPEVVAARAALVPVVRRAEMLAELMRLKWS-------VAVAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     I     I++   + RL +   + +    S            
Sbjct: 121 TTTSMVAALLDGAGFDPTIING-GIINALGTNARLGSGDWMVVEADESD----------- 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++ T +    A  R F E +P    A + 
Sbjct: 169 ---------GTFTKLPATIAVVTNMDPEHLDFYGTFEKEREAFDR-FVENIPFYGFAALC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK-------D 299
            D    + ++ RA     R+++ G+     +    V   H      + V  +        
Sbjct: 219 TDHPEVQALVARADR---RIVTYGFNPQADVRAVNVEGDHRGAFYDVQVSERVTGEARTI 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+ G   V N+L A  + I +GI    +     +   V  RF   G  S G  + 
Sbjct: 276 ERVHLPMYGLHNVQNSLAAIAVAINMGIADEQIRASFARFSGVKRRFTRTG-ESNGVVVI 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +LK  R   SGR I V                    + AD  IV D  
Sbjct: 335 DDYGHHPVEIQAVLKAARMAGSGRTIAVVQPHRYSRLSSLFEEFCTCFNDADAVIVADVY 394

Query: 420 PRSEDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
              E P     +  ++ G+     +  +     EA+   + E+    D++V  G G
Sbjct: 395 AAGEQPVEGASKEALVEGLRTHGHRNVQALPSPEALAGIVRELAQPGDMVVCLGAG 450


>gi|162449936|ref|YP_001612303.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
 gi|189082502|sp|A9FI59|MURC_SORC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161160518|emb|CAN91823.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
          Length = 469

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 85/438 (19%), Positives = 152/438 (34%), Gaps = 61/438 (13%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFAS 107
           G + D GH        +G + +V SSA   +  + +      TP++      + L+    
Sbjct: 51  GVRIDIGHR-AENV--RGVDVVVYSSAIRPENPELTEARALGTPVI---GRAEMLAELMR 104

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             YG      +A+ G+ GK++  S V  + + +GL      PT  +              
Sbjct: 105 VKYG------VAIAGSHGKTTTTSLVATVLRAAGLD-----PTVVVGGK----------- 142

Query: 168 IYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                AL   +  G   + V EA        RL          TN+  +H+D++ T +  
Sbjct: 143 ---MAALGTNARLGAGDLLVAEADESDGSFLRL---TPTIAVVTNIDPEHLDHYGTHERI 196

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAI 285
            +A +  F   +P    A++  D  + ++++ R      R ++ G   +     + +   
Sbjct: 197 KDAFVE-FAARVPFYGLAVLCLDHPHVQDLLPRIPR---RHVTYGVSPQSDYSARGIQFR 252

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             +        G+    F   +PG   V N L    +   + +   +  + L     V  
Sbjct: 253 GLETSFNAYRRGEPLGGFTVKMPGAHNVLNCLATIAVADELEVPLDVTKQALATFGGVAR 312

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           RF  VG+   G  +  DY H    +   +    R        VV      R    R +  
Sbjct: 313 RFTVVGSIG-GVTMIDDYGHHPAEIRATIDAARRAFPGEDHRVVVAFQPHRHTRTRDLFD 371

Query: 404 KI--ALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRT 451
           +   A + AD+ +VTD     E P          + IR    H      +K +  EA+  
Sbjct: 372 EFTRAFNQADVLLVTDIYAAGEPPIPGVTAERLVQSIREHGHHDARFIADKTDLPEALEK 431

Query: 452 AIEMLNKQDVLVVAGKGH 469
              +    DV++  G G 
Sbjct: 432 ---IARPGDVVIALGAGD 446


>gi|332670123|ref|YP_004453131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
 gi|332339161|gb|AEE45744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
          Length = 485

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 150/454 (33%), Gaps = 43/454 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSR ++ G +FVA+ G   DGH + P A      A   +     ++ +       P
Sbjct: 33  AVVTDSREVEPGGLFVALPGEHVDGHDYAPGA-----VAAGAALVLGARELTGADGRLLP 87

Query: 92  ILVVDNTRKFLSLFASRL----------YGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           ++VV +  + L   A  +           G     ++ +TG+ GK++    + Q+C  +G
Sbjct: 88  VVVVPDVERALGDLAREVLVRLRAASLEPGGPGLRVVGITGSVGKTTTKDLLAQLCGSAG 147

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +   +   +              S  +L              + + AS  G   +  D 
Sbjct: 148 PTVAPVRSFNNEIGLPLTVLRADESTRFL-------------VLEMGASGPGHLTYLTDI 194

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                     +G  H+      +A   AK  + + LLP +  A++ ADD     V+    
Sbjct: 195 APPDVAVVLVVGHAHLGGFGGIEAVATAKSEIVQGLLP-DGVAVLNADDP---RVLAMRA 250

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------FDFLFPLPGEFQVYNA 315
            A   V++ G             +    +    +E +D            L GE  V+NA
Sbjct: 251 LAPGDVVTFGASTGAQVRAHDVVVDRSGRARFVLEARDGAGSRTVPVELRLVGEHHVHNA 310

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           L AA   +A+G+    V   L     +      V     G  +  D Y    +S+   LK
Sbjct: 311 LAAAATGLAVGLTLDEVAVGLGAADALSPHRMHVVERPDGVTVIDDSYNANPDSMRAALK 370

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEII 433
            +  +       V   G   + G        A   L     V       E    IR    
Sbjct: 371 ALAVLAGRDRRSVAVLGEMLELGDEAREAHDAIGRLVVRLNVGLTVVVGEGARAIRDGAN 430

Query: 434 H---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           H        +   +   A R   E L   DV++V
Sbjct: 431 HEGSWGDEVVLADDLETAARFLDEELRPGDVVLV 464


>gi|146295400|ref|YP_001179171.1| UDP-N-acetylmuramate--alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166222969|sp|A4XGE5|MURC_CALS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145408976|gb|ABP65980.1| UDP-N-acetylmuramate--L-alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 455

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 144/413 (34%), Gaps = 50/413 (12%)

Query: 75  SAYSLQDFSATIRSNTPILV--------VDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
               +  F+A I  + P LV        V    +FL +          +N++AV+GT GK
Sbjct: 59  KGDEIVIFTAAIPKDNPELVKAKRLGLKVYERAEFLGMLMKDY-----KNVIAVSGTHGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I +++      + PT  + +F +          +   +  YL  +   +V 
Sbjct: 114 TTTTSMIGYILKKA-----LLNPTVLVGAFVKQL-----GGNFCIGSSEYLVVEACEYVD 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              +                G   N+  DH+DY +  ++  ++  R F   +P+    + 
Sbjct: 164 SFLN-----------FNPSIGVILNIDNDHLDYFKDIESIKDS-FRKFALKIPQNGFIVA 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----DF 302
             DD     V            S   +  F                  V  KDF      
Sbjct: 212 NLDDENVYSVASYLKQNVIY-FSTKTKADFWA---DNITSCNGYYEFDVVNKDFKHLCHI 267

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   VYN+L A  +   +GID   + E + +      R E +G    G  +Y DY
Sbjct: 268 KLNIPGFHNVYNSLAAFSVAYTLGIDKNTIKEAIFEFCGASRRLEKLG-KIDGIVLYDDY 326

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    +E  L+ ++ +   ++IV+F                 +L LAD  IVTD     
Sbjct: 327 AHHPTEIEATLRTLKKLAKEKVIVIFQPHTFSRLKSLMEGFVKSLSLADKVIVTDVYAAR 386

Query: 423 ED--PEKIRAEIIHGIPGF---IEKGNRIEAI-RTAIEMLNKQDVLVVAGKGH 469
           E         ++   +       E  ++ E I    +    K D++   G G 
Sbjct: 387 EKNVYGVSSKDLYEKLKKAGVDCEYIDQFEKIAEYVLNTAQKGDIVATIGAGD 439


>gi|319778483|ref|YP_004129396.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
 gi|317108507|gb|ADU91253.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
          Length = 472

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 93/439 (21%), Positives = 155/439 (35%), Gaps = 65/439 (14%)

Query: 56  GH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   ++      GA+AIVVS+A S  +       +  I VV      L+       G  
Sbjct: 56  GHSADYLD-----GADAIVVSTAVSQGNPEVLKARSLHIPVVPRAIM-LAELMRLKSG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S V  +    GL      PT  I                L  A
Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLATGGLD-----PTFVIGGR-------------LNSA 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +        ++ VEA            +       TN+  DH+D +    A        
Sbjct: 146 GANAKLGTGDYIVVEADESDAS---FLHLFPTIAIITNIDSDHMDTYGHDVAKLRGAFVE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    AII  DD   + +M       C   + G   +  H + +   +N  ++  
Sbjct: 203 FAQRLPFYGSAIICTDDENVRNIMPFI---SCSSTTYGLNEQA-HFRAINIENNGTRMEF 258

Query: 294 SV----EGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            V    +GK+         +PG+  V NAL A  +   +G+  + + + L + + V  RF
Sbjct: 259 DVIRKYQGKELPQLHISLNIPGQHNVLNALAAIAVGTEVGVADSDIEKALSEFNGVSRRF 318

Query: 347 EFVG----TNSRGG---RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGK 398
             VG      + GG    +  DY H    ++  ++  R    + R++  F          
Sbjct: 319 TQVGDFDVIQNNGGGKFTVIDDYGHHPVEMDATIQAARGAWPTRRLVFAFQPHRYTRTRD 378

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI--------- 449
                   L  AD  I+++  P  E P  I A     +   +     +E I         
Sbjct: 379 CFEDFVNVLGKADAVILSEVYPAGESP--IVAADGRALARALRVAGHVEPIFVEDINDMP 436

Query: 450 RTAIEMLNKQDVLVVAGKG 468
           +  +++    DV++ +G G
Sbjct: 437 KAILKIAKDGDVVICSGAG 455


>gi|149914528|ref|ZP_01903058.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
 gi|149811321|gb|EDM71156.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
          Length = 477

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 138/410 (33%), Gaps = 39/410 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA    +          + VV        L          ++ +AV GT GK+
Sbjct: 82  AQVVVISSAIKPGNPELDEARKRGLPVVRRAEMLAELMRL-------KSNVAVAGTHGKT 134

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  +  R G     +     I ++  + R+     +                  V
Sbjct: 135 TTTTMVAALLDR-GKFDPTVVNGGIIHAYGSNARVGQGEWM-----------------VV 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA       +RL          TN+  +H+D+  T++         F   +P    A+  
Sbjct: 177 EADESDGTFNRLPAT---IAIVTNIDPEHMDHWGTEENLHRGFYE-FVSNIPFYGLAVCC 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD-FLFP 305
            DD   + ++ +  +          Q     +            V +  EG   +    P
Sbjct: 233 TDDPDVQALVAKLTDRRVVTYGFNTQADIRAVNLRYEKGVAHFDVALQAEGTMIEGCTLP 292

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  V NAL A  +   +G+  + + E L     V  RF  VG    G  I  DY H 
Sbjct: 293 MPGDHNVSNALSAVAVARHLGMKRSEIREALAAFGGVNRRFTKVG-EVNGVTIIDDYGHH 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +  +LK  R    GR+I V                    + AD+  + +     EDP
Sbjct: 352 PTEIAAVLKAARQACDGRVIAVHQPHRYSRLHHHFAEFCTCFNEADVVAIAEVFAAGEDP 411

Query: 426 --EKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468
                R +++ G+     +  R      + +R   E     D++V  G G
Sbjct: 412 IDGATRDDLVAGLIRAGHRHARAFNDLDDLVRLVREQARPGDMVVCLGAG 461


>gi|78221634|ref|YP_383381.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
 gi|109892706|sp|Q39YL8|MURC_GEOMG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78192889|gb|ABB30656.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
          Length = 461

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 144/427 (33%), Gaps = 51/427 (11%)

Query: 56  GHLFIPQAIAQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A    A+  +VV+S     D    + +   ++ V    + L+      YG   
Sbjct: 56  GH-----ARENLADVDVVVTSTAVHDDNPEVMEAKRRMIPVIPRAEMLAELMRMKYG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAK 172
              +A+ GT GK++  S V       G+    +  G  +T+ + A+              
Sbjct: 108 ---IAIAGTHGKTTTTSMVATALTHGGIDPTIVIGGKLNTLGTNAK-------------- 150

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  QG   V+    S G        +       TN+  DH+D++            
Sbjct: 151 -----LGQGQFLVAEADESDGSFLK----LSPTIAVVTNIDADHLDFYTGGIEQIKDTFV 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
            F   +P    A++  +D    E++ R      R ++ G      I    +         
Sbjct: 202 DFINKIPFYGLAVLCLEDRNIAEILPRVKK---RFVTYGLSSQADIRATHIRLEGGTTSF 258

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G    +  F +PG   V NAL    + + + +  A + E   K   V  RF+ V 
Sbjct: 259 VAHYKGYRMGEVSFAMPGAHNVLNALACIAVAMELDVPFAQIQEGFAKFGGVGRRFQ-VK 317

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               G  +  DY H    +   L   ++     R++V F         +           
Sbjct: 318 GEVNGITVVDDYGHHPAEIRATLAAGKSGWPDRRLVVAFQPHRFSRTKELFAEFVTCFYD 377

Query: 410 ADIAIVTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           AD+ ++TD     E P E + AE +      HG        +R       ++++   D++
Sbjct: 378 ADVLVLTDIYSAGEAPIEGVTAERLAENIRKHGQRDVTYIADREALPDHLLQIVRPGDIV 437

Query: 463 VVAGKGH 469
           +  G G+
Sbjct: 438 LTLGAGN 444


>gi|312898960|ref|ZP_07758348.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
 gi|310620122|gb|EFQ03694.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
          Length = 462

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 139/413 (33%), Gaps = 45/413 (10%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +++SSA   + ++  A  +   PI+   +    L    +          +AV G  G
Sbjct: 67  AQVVIISSAIRDTNEELEAARKRQLPIIHRAD---ALVHIMTY------GKAIAVAGAHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S + Q+                  S      +      YL         + V   
Sbjct: 118 KTTTTSMLGQVF---------------YESKMDPTLVIGGEVDYLQGNSVLGKGEYVIAE 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+    L +H            TN+  DH+D++ T +    A       L P+   A+
Sbjct: 163 ADESDGTFLKEH------PHIAVVTNIDADHMDHYGTIENVIQAFKDFIHLLDPQTGLAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFL 303
           + AD+   +  +          ++   +    +  K    H  + +    +  +F     
Sbjct: 217 LCADNDKIRAFLPEVKRPF---VTYAIEAPADYKAKNIGYHEGKLIFDVYKHDEFLGSVE 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V NAL    + ++ GI    +   L + H    RF+  G    G  +  DYA
Sbjct: 274 LNVPGNHNVLNALATVAVSLSCGISFEDIAAALSRFHGAKRRFQTKGH-VNGIWVVDDYA 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +   L   R++ + R++ +F                 A   AD  I+TD     E
Sbjct: 333 HHPTEIHATLAAARSMGTHRVVCLFQPHRYTRTQLLAEEFSKAFTCADKLILTDVYSAGE 392

Query: 424 DP-----EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DP          + +    G      G + E +    +    +D+++  G G 
Sbjct: 393 DPIPGIGGTFLTDKVKSATGQDVEYIGTKEELLEYLRKNARPRDLILTMGAGD 445


>gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 468

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 80/456 (17%), Positives = 162/456 (35%), Gaps = 44/456 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +DSR I+ G IF+A+ GN+ DGH FI  AI +GA+ +++     +  F+ +   +  
Sbjct: 32  SIKTDSRKIEKGDIFIALKGNRSDGHSFISDAINRGAKGVIL-KDEEMSKFT-SFNKDIS 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              V +    +   + R          I+AVTG+ GK++    + ++ +R+       G 
Sbjct: 90  FFGVPSPDVAILEASERYLAGLSSLREIVAVTGSVGKTTTKEAIGKVLERTYRVHISRGN 149

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +T+        +   +  +L      +   G           G   +R    +  +   
Sbjct: 150 YNTLLGCCLTILVAPRNTEFL------VLEMGANAKGEI----GEIANR---FRPSSSVI 196

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T++   H++          AK+ +            +  D       + +  +   +++S
Sbjct: 197 TSVDPVHLEGFGGIDGVLGAKLEIVTA---DCKLLFVNGDSPILNSGIDKLKHRPSKIIS 253

Query: 270 VGYQGKFIHLK-----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           VG     I+       ++   H  +++TI            L G+       +A  +   
Sbjct: 254 VGTSTSCIYRITDSSLRLDGNHYFRKITIDSPFGLKTVESKLWGKQHTLIISLAFAVGCE 313

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITS- 381
            G+    + + L    +   R       S  G +++D  Y  +  S++  + N+  I S 
Sbjct: 314 YGVAPDDIAQGL--FVMSLPRGRGAILQSEEGVLFIDESYNASPVSVKAAIDNLCLIPSR 371

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           GR I V G   +          +I   A   AD  ++      SE        I      
Sbjct: 372 GRKIAVLGGMKELGSYANRFHDEILDYAAKAADQVLI----HGSEWKG-----INKNYKN 422

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            +   +  + +     +L   DV++V  KG     +
Sbjct: 423 VLCLQDMEDIVNHLKAILRTGDVVLV--KGSRAYEM 456


>gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
 gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
          Length = 470

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 127/353 (35%), Gaps = 31/353 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +N +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWHVNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+V++ +  L         +    ++AVTG+ GK+S    + ++    G +   
Sbjct: 73  SEDAPLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAA 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
           +               +  +   +   L+ +       V     +H G         +  
Sbjct: 133 V--------------ASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++     +     K  + + L P    A++ AD A +  +   A  A  
Sbjct: 179 VAMVTTVAPVHLEAFDGIEGIAAEKAAIMDGLEP-GGVAVLNADIAEAPILQAVAGRAAQ 237

Query: 266 RVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAG 320
            V   G           L       ++ +  +++ G           G     NAL A  
Sbjct: 238 DVQWFGTGQGPIAPSYRLVATTLRGDETEAEVTLPGGQGHRLQIQSLGAHFAMNALGALA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN---SRGGRIYVDYAHTSNSLE 370
              A+ +D    ++ L     V GR      +    +G  + +D ++ +N   
Sbjct: 298 CLAALDLDLTKAVQSLSLWSPVTGRGARETVSLGAGQGEILLLDDSYNANPTS 350


>gi|51892345|ref|YP_075036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856034|dbj|BAD40192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 521

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 99/511 (19%), Positives = 167/511 (32%), Gaps = 93/511 (18%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR ++ G  FVA+ G + DGH F  QA A+GA  ++ +              +
Sbjct: 27  VSGIAWDSRLVRPGDCFVALAGERADGHDFAAQAAARGAACVLAARPVP--------AGD 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             ++V  +    L      L  +HP   ++ +TG+ GK++       +         +  
Sbjct: 79  AAVVVCPDPLLGLGRLGLALRSRHPHLRVVGITGSVGKTTTKEMTAAVLAE------RFR 132

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAG 207
              T  +          S + L  +L+ L+ +    V  +   + G   +     +   G
Sbjct: 133 VFRTEGNL--------NSEVGLPASLAGLTDEHEAAVLEMGMRAPGEIAYLASIARPQVG 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H++   TQ+    AK  L   L P +  A++ ADD     V   A     RV
Sbjct: 185 VVTNVGITHLELLGTQENIALAKSELVRAL-PPDGVAVLNADDP---RVRAMAAATPARV 240

Query: 268 LSVGYQGKFIHLKKVC-----------------------------AIHNKQQVTISVEGK 298
              G   +                                          Q+  +     
Sbjct: 241 WFYGLTAREAADDAAAAPVATGTAGEAGTPGGRVVGWVTAENARPDGPMAQRFRLVCHLG 300

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + D   P PG   + NAL AA + ++ G+D   V   L        R   V   + G RI
Sbjct: 301 EADVRLPAPGPHNLLNALAAAAVGLSQGLDLEAVARGLSLFRNAGNRLRLV--EAGGVRI 358

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-----RPIMGKIALDLADI 412
             D Y     S+   L+ +R         V   G   + G         +G +A  L D 
Sbjct: 359 LDDTYNAAPASVIAALEVMRGFAGPEGRCVAVLGDMYELGALEVEGHRQVGMVAARLTDE 418

Query: 413 AIVTDDNPRS------------------------EDPEKIRAEIIHG---IPGFIEKGNR 445
            +      R                         E P + +  +  G   +       + 
Sbjct: 419 LVAVGQLGRHIAEGARAALAGAGGGSAGAGFRGGEGPPEGQGPVAGGGTRLREVHHVPDN 478

Query: 446 IEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
             AI    E L   D ++V G +G +   IV
Sbjct: 479 AGAIAWLKERLRPGDTVLVKGSRGMKMEEIV 509


>gi|308271441|emb|CBX28049.1| UDP-N-acetylmuramate--L-alanine ligase [uncultured Desulfobacterium
           sp.]
          Length = 459

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 148/413 (35%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA S ++      +   + V+        L   +         +AV G  GK
Sbjct: 64  GADVVVVSSAVSPENPEVVAAAQVSVPVIPRAEMLAELMRLKYS-------IAVAGAHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +  + GL      PT  I    +                + L  QG   V+
Sbjct: 117 TTTTSIVASVLAKGGLD-----PTVVIGGKLKSIDS------------NALLGQGNYIVA 159

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S G                TN+ ++H+D++    A  +     F + +P    A++
Sbjct: 160 EADESDGSFLKY----SPAIAVVTNIDKEHLDFYSNIDAIKDV-FLNFIDRIPFYGLAVL 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             D+ Y ++++ +      R  + G   +     K V       +  +   G    +   
Sbjct: 215 CLDNEYVQDIIPKIKK---RFTTYGMSSQAVFQAKNVSIEGLISKFKVCYNGNTLGEISL 271

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   VYN+L +  + + + I   ++ E LE +  V  R E  G   RG  +  DY H
Sbjct: 272 NLPGIHNVYNSLASIAVGMELDIPFDIIKEALENMQGVQRRLEIKG-EVRGITVVDDYGH 330

Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +   L+  +      R+IVVF                 A   +D  I+    P  E
Sbjct: 331 HPTEIRTTLQAAKDCWPDRRVIVVFQPHRYSRTKALFDDFTRAFYQSDHLIILPIYPAGE 390

Query: 424 ------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 D + +  EI  HG    +   +   A+    + LNK D+L+  G G 
Sbjct: 391 KEIEGIDSKFLCEEIAAHGHKEAVYMNDMESAVEYLKDKLNKNDILLTLGAGD 443


>gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
 gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
          Length = 826

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 166/406 (40%), Gaps = 31/406 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       ++  I+ V +DSR +      +F A+   + DG  +IP+  A+G 
Sbjct: 5   IEKVTTLIGARRYGDKDANISFVLTDSRSLCFPEETLFFALKTERNDGQNYIPELYARGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV     + +  AT   ++  L V  + + L   A R   ++   I+ +TG++GK+ 
Sbjct: 65  RNFVVE---VVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  + L   L+  +  GV    + 
Sbjct: 122 VKEWLYQLLSPQ--------MVVTRSPRSYNSQIGVPLSVLL---LNENTQVGVFEAGI- 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY- 247
            S  G      D I+   G FT LG  H +   + +A  + K++LF      ++ AI+Y 
Sbjct: 170 -SQPGEMMALRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLF-----HDTEAIVYS 223

Query: 248 ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
           AD+    + + +    G ++  SV       ++K +     +  V+   +G+ +  +  P
Sbjct: 224 ADNEVMAQCLSQYDYKGQKLDWSVKNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
              +  V N++  A + + +G+  A + E + +L  V  R E V     G  +  D Y  
Sbjct: 284 FIDDASVENSITCAVVSLHLGLTPATISERMAQLEPVAMRLE-VKEGQHGCTLINDSYNS 342

Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             NSL++ L  +         R  ++           + +  K+A 
Sbjct: 343 DFNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAF 388


>gi|220904385|ref|YP_002479697.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|254765997|sp|B8IZU2|MURC_DESDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219868684|gb|ACL49019.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 457

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 147/423 (34%), Gaps = 50/423 (11%)

Query: 67  GAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKFL-----SLFASRLYGKHPEN 116
           GA   V  +A ++ D         I  + P LV    R         + A  +  +    
Sbjct: 50  GARIAVGHAAENVGDVQVLVKSTAISDDNPELVEARKRNIAIIPRAEMLAELMRLRQG-- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S    I   +G   +  IG    +                      
Sbjct: 108 -IAIAGTHGKTTTTSLTASIFDEAGLDPTVIIGGRLNVYGANAHLG-------------- 152

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G   ++    S G     L     I    TN+  DH+D+++T++A  +A ++ F 
Sbjct: 153 ----HGEYLIAEADESDGSFLCLL----PIINVVTNVDEDHLDHYKTREAINSAFVQ-FM 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P     I+  DD    E++ +       VL+ G+                 +  + +
Sbjct: 204 NNVPFYGLNIVCGDDPGVLELLPQVKRP---VLTYGFAEDNALRAVPLESGRISRFQVWL 260

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             +   +   P PG   + NAL + G  + +GI        L     V  RFEF G   +
Sbjct: 261 HDEKLGEVSLPQPGRHNILNALASIGAAMEVGISFEKCAAGLCGFKGVGRRFEFKGEK-Q 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  DY H    +   L   R +  GR IV  F                   +  D  
Sbjct: 320 GVTVVDDYGHHPAEIAATLATARQVFEGRRIVAAFQPHRFSRTEAHFGEFCKVFNNVDQL 379

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
           ++T+    SE+P      + +   I       +E    ++ +  A+ ++L + DVL+  G
Sbjct: 380 LLTEIYAASENPIPGVSGQSLAQGIRQVSSTPVEYFQTLDDLARALPDILQEGDVLLTLG 439

Query: 467 KGH 469
            G+
Sbjct: 440 AGN 442


>gi|330836622|ref|YP_004411263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
 gi|329748525|gb|AEC01881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
          Length = 477

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 159/448 (35%), Gaps = 44/448 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR   AG +F+A+ G++ DGHL+IP AI++GA  +++  +   +  +   R+ 
Sbjct: 35  IRNLTIDSRSCDAGSLFIALPGSRSDGHLWIPDAISRGATTVLLHESRCGEFATLLDRTG 94

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           T  LV       L   A+           + +TG+ GK++    +  I  +      +  
Sbjct: 95  TWALVAKEPLHALYRMATEYVSLLNGVTTIGITGSCGKTTTKEMLASILSQ------EFP 148

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAG 207
              T  ++         S + L  +L  +       V      H G     L  +     
Sbjct: 149 TVKTPGNY--------NSTLGLPLSLMQIGDHHKYGVFEMGIDHIGEMDTMLGMLAPNHA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H +   +  A    K +L    L           D  S++ M+         
Sbjct: 201 VLTNIGISHAEKLGSISAIMTEKGKL----LKNARNGYFMGMDEPSRKAMEHIAGHPQGF 256

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +        ++    +      TI  +G +     P  G+  + +AL A  +   +G+
Sbjct: 257 WGIHATEGVTGIRDEGLLGW----TIIYQGTEIHV--PAIGKHSLKDALAAISVARHLGV 310

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRII 385
               +   LEK+  + GR   V   S    +  DY + + S    + +    T   G   
Sbjct: 311 GEEFIKHGLEKVENLEGRSRVV---SGDVTVIEDYYNAAASSTTSILDFMAATSWKGDKK 367

Query: 386 VVFGCGG------DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           VV G         DR          +A   +     TD    ++    I      G  G 
Sbjct: 368 VVLGDMKELGRYSDRAHEMIGRRLLLASPSSVFLYGTD----TKKTWNILRS--GGYAGQ 421

Query: 440 IEKGNRIEAIRTAIE-MLNKQDVLVVAG 466
           +   +    +  A+E  +++ D+++V G
Sbjct: 422 LVYSDDEHEVNRALERNIHRGDLVLVKG 449


>gi|261749596|ref|YP_003257282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497689|gb|ACX84139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 433

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 131/376 (34%), Gaps = 27/376 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +  +S+ ++ G IF A+ GN  DG+ F  +AI+ GA   +V       D      S+ 
Sbjct: 14  SGIEINSKKVKNGSIFFALKGNNFDGNQFAHEAISNGAMIAIV-------DNIKYSFSHK 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I  V N    L   A     +     I+A+TG++GK++       I  +          
Sbjct: 67  NIFFVKNALSSLQELALYHRLQLNRVPIIAITGSNGKTTTKELTTAILSK---------K 117

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              + S  ++       P+ L   LS   +  ++ V + A+     Q     I    G  
Sbjct: 118 YEVVHSTEKNFNNHIGIPLTL---LSMPKNTQISVVEIGANQEKEIQKMCSIIHPNYGYI 174

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++  +  +     K+ L+  L   +    +  DD      ++  H+ G     
Sbjct: 175 TNFGKAHLEGFKNIKGVIRGKLELYNFLKKNKKKVFVNGDDP-----IQLIHSLGIDRYI 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +        +     K  +   +  KD   +  L G + +YN   A  +     +  
Sbjct: 230 FSERINSDVDVPIKYFWKKTDLKSVLCIKDMQIVSSLVGSYNLYNIASAITIGNYFKVPL 289

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +E       R + +   +    I   Y    +S+   L     I  G  I + G
Sbjct: 290 KKIKKAVEDYIPNNYRSQILEKENVKI-IVDCYNANPSSMIETLTFFNKI-QGNKIAILG 347

Query: 390 CGGDRDQGKRPIMGKI 405
              +     +    KI
Sbjct: 348 DMLELGSFSKKEHAKI 363


>gi|228471274|ref|ZP_04056080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
 gi|228306916|gb|EEK16014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
          Length = 456

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 138/382 (36%), Gaps = 27/382 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + + +D+RH++   +FV++ G   DG+ F   A+ QG +  +V     +           
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAADALKQGCKYALVDDLSYIDAVEEADLRER 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I   D   + L   A     K     +A+TGT+GK++    V  +           G  
Sbjct: 78  LIYYKDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQGNY 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +             P   ++   L      G +H+   AS   L Q          G  T
Sbjct: 138 NNEIGVPLTLLQVRPEHQFVIVEL------GASHIGDIASLCKLAQ-------PQYGIIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H+    T +    AK  L+  L   +  A    +D   K ++   +       +V
Sbjct: 185 NVGRAHLSGFGTPEGVVKAKSELYAYLREHDGQAFCNGED---KTLISNLNGLP----TV 237

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKD------FDFLFPLPGEFQVYNALVAAGLCIA 324
            Y G          +   +   + +E +D      +     L G++ + N L A  + + 
Sbjct: 238 YYNGTSSPRITGSVLPTDETGLLKIEWRDQETGESYQLATKLVGDYNLNNILAAITVGLH 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            G+D   + E +        R + +   ++G R+ +D Y    +S+E+ L +  T+ S  
Sbjct: 298 FGLDPKTINEAVTNYQPHNERSQVLPPTAQGNRVILDCYNANPSSMEVALNSYFTMDSQG 357

Query: 384 IIVVFGCGGDRDQGKRPIMGKI 405
           +  +   G   + G       I
Sbjct: 358 LNRMLILGDMNELGDAAESEHI 379


>gi|218768816|ref|YP_002343328.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
 gi|121052824|emb|CAM09171.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
          Length = 452

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 148/421 (35%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L + A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAVDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|115524121|ref|YP_781032.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
 gi|122296545|sp|Q07PT2|MURC_RHOP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115518068|gb|ABJ06052.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
          Length = 467

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 143/421 (33%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  AGADVVVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +G     +     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVAALLD-AGEFDPTVINGGIINAYGTNARLGAGEWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T +A  NA  R F E +P    A+
Sbjct: 168 -----------GTFLKLPADVAIVTNVDPEHLDHFKTFEAVQNA-FRDFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF---- 300
           +  D    + ++ +  +   R+++ G      + L  +          ++   +      
Sbjct: 216 MCIDHPVVQALVGKIEDR--RIITYGENPQADVRLLDLKPNGGASTFKVAFRDRKANTAH 273

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D   P+PG     NA  A  +   +G+    + + L     V  RF   G +  G  
Sbjct: 274 EIADLKLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAGFGGVRRRFTKTG-DWNGVS 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I  DY H    +  +LK  R  T  ++I V                    + AD  IV +
Sbjct: 333 IIDDYGHHPVEIAAVLKAARESTKTKVIAVVQPHRFTRLQSLFEEFCTCFNDADAVIVAE 392

Query: 418 DNPRSEDP-EKIRAEIIHGIPGFIEKGNRI-------EAIRTAI-EMLNKQDVLVVAGKG 468
             P  E P   I  +  + + G    G+R         A+   +  +    D +V+ G G
Sbjct: 393 VYPAGEAPIPGIDRD--NFVLGLRAHGHREVIPLQESAALAGVVHSIAKPGDYVVLLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|225388505|ref|ZP_03758229.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
 gi|225045436|gb|EEG55682.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
          Length = 462

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 161/442 (36%), Gaps = 62/442 (14%)

Query: 65  AQGAEAIVVSSAYSLQD--------FSATIRSNTPILVVDNTRKFLSLFASRLYG---KH 113
           A+GA       A +++         ++A I  + P  +    +    L  +   G   ++
Sbjct: 53  AKGARVYYGQRAGNIEQEPGIQAVVYTAAIHEDNPEFIAAREKGLPMLSRAEFLGEMMRN 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +A++GT GK++  S V ++   +G     +     +     + R+ +P  +++ +A
Sbjct: 113 YKQSIAISGTHGKTTTTSMVAEML-LAGDMDPTVSVGGILKDIGGNIRVGSPD-LFVTEA 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y +S    + ++E                      N+  DH+D+ +  +   ++  RL
Sbjct: 171 CEYTNSFLSFYPTLE-------------------VVLNIEADHLDFFKDLEDIRHS-FRL 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQV 291
           F + LP++   +I +     +++        CR+++ G      +  +        +   
Sbjct: 211 FAQKLPQDGLLVINSGIENLQQI---TDGLKCRIVTFGSSPDSHYTAQNITYDEFARPSY 267

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + V+GK        + GE  VYN+L A  + + +G+    ++  L+       RFE  G
Sbjct: 268 DLIVQGKLVNRVSLGVTGEHNVYNSLAAIAVVMELGVGFEAIMAGLKNFSGTDRRFEKKG 327

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G  I  DYAH    ++  L   +     ++  VF                  L  A
Sbjct: 328 EIG-GVTIIDDYAHHPQEIKATLAAAKNYPHRKLWCVFQPHTYTRTKAFLDQFAETLAAA 386

Query: 411 DIAIVTDDNPRSEDP------EKIRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNK 458
           D  I+ D     E          I  +I      +H IP F E           +E    
Sbjct: 387 DEVILADIYAARETDTLGVSSADIARKIQELGTPVHFIPSFDEIE------TFILENCMN 440

Query: 459 QDVLVVAGKGHETVHIVTNGEK 480
            D+L+  G G     IV  GEK
Sbjct: 441 GDLLITMGAGD----IVKVGEK 458


>gi|300857309|ref|YP_003782293.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM
           13528]
 gi|300437424|gb|ADK17191.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM
           13528]
          Length = 457

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 87/422 (20%), Positives = 145/422 (34%), Gaps = 45/422 (10%)

Query: 66  QGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +GA   +      +     L  ++A I+ N    +   T     +  + L G   +    
Sbjct: 52  KGATIYIGQISENIKPDIDLVIYTAAIQKNNEEFLKAKTLNIPLMSRAELLGHIMKGHKY 111

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  I  ++ L    I     + +   + R+   SP ++ +A  Y
Sbjct: 112 NVAVAGTHGKTTTTSMLSCITLKADLDP-TILVGGNLDNINGNVRIG-NSPYFITEACEY 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S                           G   N+  DH+DY++      NA ++ F  
Sbjct: 170 KGSFLKFF-------------------PSIGVILNIDADHLDYYKDIDDIQNAFIK-FAN 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+P++   +   DDA  K V+    N  C VL+ G     I  K +C    K   +  + 
Sbjct: 210 LIPEKGYLVGCVDDARMKNVIS---NVNCNVLTYGINAGDITAKNICFDE-KSCASFDIY 265

Query: 297 GKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             D         +PG+  + NAL +  + + + I +  +   LE       RFE  G   
Sbjct: 266 KNDVKISSLHLNVPGKHNILNALASTAVSLILDISTDNIKMGLENFKGTHRRFELKG-KK 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +G  +  DYAH    ++  L         RII VF                 A D  D  
Sbjct: 325 QGITVIDDYAHHPTEIKATLNAAINYPHKRIICVFQPHTFSRTISLFKEFTEAFDNVDEL 384

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           I+ +  P  E          +  EI           +    +      L   D+L+  G 
Sbjct: 385 ILANIYPAREKDTGKVSSAMLSKEIAKRGIKSTNISDFKSIVDYLKSNLKDGDLLLTVGA 444

Query: 468 GH 469
           G 
Sbjct: 445 GD 446


>gi|325142970|gb|EGC65327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis 961-5945]
          Length = 452

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 148/421 (35%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L + A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAVDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|293603445|ref|ZP_06685870.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
 gi|292818147|gb|EFF77203.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
          Length = 468

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/423 (21%), Positives = 142/423 (33%), Gaps = 52/423 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA AIV S+A +  +          I VV      L+       G      +AV GT GK
Sbjct: 64  GAAAIVTSTAVAGDNPEVIAARAARIPVVPRALM-LAELMRLKRG------IAVAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +          + PT  I                L  A +        ++ 
Sbjct: 117 TTTTSLVASVLAA-----GDLDPTFVIGGR-------------LNSAGANARLGQGDYIV 158

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA     D   L+ +  +    TN+  DH+D +    A   +    F + LP    A++
Sbjct: 159 VEADES--DASFLNLL-PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKD-----F 300
            +DDA  +E+M         + + G          +V     + +  +    +D      
Sbjct: 216 CSDDANVREIMPFVSRP---ITTYGLNEDAQVRAYEVQPSGTRMRFNVQRTHRDTLLPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGG 356
                LPG   V NAL A  +   +G+    + E L     V  RF    EF    S GG
Sbjct: 273 QVELNLPGLHNVRNALAAIAVATELGVSDDAIRESLAAFKGVGRRFTQTGEFPVPASHGG 332

Query: 357 ---RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               +  DY H    +   L   R      RI++ F                  L  AD 
Sbjct: 333 GTFTVIDDYGHHPVEMAATLSAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGTADA 392

Query: 413 AIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++T+     E P          RA  + G    +   +  E  +  ++ +   DV++V 
Sbjct: 393 VLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDFVRDGDVVIVM 452

Query: 466 GKG 468
           G G
Sbjct: 453 GAG 455


>gi|225575651|ref|ZP_03784261.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037108|gb|EEG47354.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
          Length = 459

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 147/433 (33%), Gaps = 57/433 (13%)

Query: 62  QAIA-QGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           QA+  +GA+      + ++QD      F+A I  + P       ++   L  + L G+  
Sbjct: 48  QALEAKGAQIFYGQRSSNIQDSVDVVVFTAAIHPDNPEYSCAVKKRLPMLTRAELLGQIM 107

Query: 115 ENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            N    +AV GT GK++  S +  I   S            I      N     S  ++ 
Sbjct: 108 RNYDTPIAVAGTHGKTTTTSMISHILLESDCDPTI--SVGGILPVIGGNIRVGNSETFVT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y +S                               N+  DH+D+ +  +   ++  
Sbjct: 166 EACEYTNSFLSFF-------------------PKISLILNIDADHLDFFKDIEDIRHS-F 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           RLF E LP +   II +D     E+++   +  C +++ G      +  +    +     
Sbjct: 206 RLFAEKLPADGTLIINSDTDKYTEIIR---DLPCEIITYGLNSNADYTAQNIQYNEYGYA 262

Query: 292 TISV--EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           T     +G +   +   +PG   V NAL    L   +G++S  +   L+       RF++
Sbjct: 263 TFDCVKDGVNLGTYSLSVPGIHNVSNALATLVLGFKLGLNSEALKTGLKHFQGTDRRFQY 322

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G       +  DYAH    ++  L   +      +  VF                 AL 
Sbjct: 323 KGKVGE-VTVIDDYAHHPTEIKATLTAAKNYPHKSLWCVFQPHTYTRTKALLPEFARALT 381

Query: 409 LADIAIVTDDNPRSE---------DPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEML 456
            AD  ++ D     E         D +K   E+    H    F E  N        +E  
Sbjct: 382 FADHVVLADIYAARETDNLGISSRDLQKQILELGTDCHYFSTFDEIEN------YLLENC 435

Query: 457 NKQDVLVVAGKGH 469
              D+L+  G G 
Sbjct: 436 IPGDLLITMGAGD 448


>gi|329940199|ref|ZP_08289481.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
 gi|329301025|gb|EGG44921.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
          Length = 462

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/429 (21%), Positives = 145/429 (33%), Gaps = 41/429 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    + +A  A  +VVSSA    +      +   I VV  +       A  +
Sbjct: 54  GVTVHLGH--AAEHLADDASCVVVSSAIRADNPELARAAERGIPVVHRSDA----LARLM 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G  P   +AV GT GK++  S +       G             S+A    L  P    
Sbjct: 108 DGLRP---IAVAGTHGKTTTTSMLAVSLTALGREP----------SYAIGGDLDAPGSNA 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L                 + S H                  N+  DH   + +    + +
Sbjct: 155 LHGEGEIFV---AEADESDRSFHKY--------APEVAIVLNVELDHHANYASMDEIYES 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
               F   +      ++ AD   ++E+ +R      R ++ G  +   + +  V      
Sbjct: 204 -FETFAGRVVPGGTLVVSADHEGARELTRRLAKT-VRTVTYGAAEDADVRVLSVVPHGLT 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +VT+ ++G    F   +PG    +NA+ A     A+GI +A +   L     V  R + 
Sbjct: 262 SEVTVELDGAPLTFTVSVPGRHYAHNAVAALVAGRALGIPAAELAPALAAYTGVKRRLQL 321

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G    G ++   YAH    +   L+ +R+ T GRI+VVF         +       AL 
Sbjct: 322 KGEAG-GVQVVDSYAHHPTEMTADLEAMRSGTRGRILVVFQPHLFSRTQELGKEMGEALA 380

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           LAD ++V D  P  EDP      E I                  E       M    D++
Sbjct: 381 LADASVVLDIYPAREDPLPGVTSELIIDAARAAGADVRAVHGMAEVPEALAGMAEPGDLV 440

Query: 463 VVAGKGHET 471
           +  G G  T
Sbjct: 441 LTMGAGDVT 449


>gi|299131924|ref|ZP_07025119.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
 gi|298592061|gb|EFI52261.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
          Length = 468

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/417 (18%), Positives = 137/417 (32%), Gaps = 47/417 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVS+A    +          I VV        L   +         +A+ GT GK
Sbjct: 66  GADVLVVSTAIKRDNPELMAARAQRIPVVRRAEMLAELMRLKSC-------IAIAGTHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +   +G     +     I+++  + RL     + +    S           
Sbjct: 119 TTTTSMVATLLD-AGALDPTVINGGIINAYGTNARLGAGDWMVVEADESD---------- 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          + +     TN+  +H+D+ +T +A   A  R F E +P    A++
Sbjct: 168 ----------GTFLKLPVDVAIVTNVDPEHLDHFKTFEAVQEA-FRHFVEGVPFYGFAVM 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF----- 300
             D A  + ++ +  +   R+++ G        L  +       +  + +  +       
Sbjct: 217 CIDHAVVQALVGKIEDR--RIITYGENPQADARLVDLQPFTGGSKFKVEIRHRKAGAAHV 274

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D + P+PG     NA  A  +   +G+    + + L     V  RF   G    G  +
Sbjct: 275 ISDLVLPMPGRHNALNATAAIAVAYEVGMSDEAIRKALAGFGGVKRRFTRTGEW-NGVTV 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    +  +LK  R  T GR+I V                    + AD  +V D 
Sbjct: 334 IDDYGHHPVEIAAVLKAARDSTKGRVIAVVQPHRYTRLQSLFEEFCTCFNDADTVVVADV 393

Query: 419 NPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P  E P         +     HG    I      +       +    D +V  G G
Sbjct: 394 YPAGEAPIPGIDRDSFVLGLRAHGHREVIPLEGASQLASIVRRIAQPGDFVVCLGAG 450


>gi|170755790|ref|YP_001783188.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B1
           str. Okra]
 gi|229486483|sp|B1IH05|MURC_CLOBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169121002|gb|ACA44838.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B1 str.
           Okra]
          Length = 458

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 149/427 (34%), Gaps = 54/427 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +     ++++     ++A I S+ P ++          +   FL         
Sbjct: 53  DKGAKIYIGHKKENVKNADLIVYTAAIASDNPEIIEAKEKNIKLMDRADFLGNLMKGYKY 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A++GT GK++  S +  +  ++ +    I     +     + R+      ++ 
Sbjct: 113 N-----IAISGTHGKTTTTSMLSHVALKANVDP-TILVGGNLDIINGNVRVGESD-FFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y SS                           G   N+  DH+DY++      NA  
Sbjct: 166 EACEYKSSFLKFF-------------------PYIGVILNIDADHLDYYKDLDDIKNAFS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
           + F +L+PK+   + Y +D   + ++K A    C V++ G     I    +         
Sbjct: 207 K-FIKLIPKDGYLVAYGEDKNIQSIIKEA---NCNVITYGINSGDIQAHNIEYDEKACGN 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +    K F     +PG+  + N+L +  + +A  +    ++E +E       RFE  
Sbjct: 263 FDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLASDMKDKDIIEGIESFFGTHRRFELK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    +  DYAH    +   L   +     ++  VF                   D 
Sbjct: 323 GCKNN-ITVIDDYAHHPTEISATLDAAKKYPHNKMFCVFQPHTYSRTLTLFDDFTKCFDN 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIR-TAIEMLNKQDVL 462
           AD  I+ D     E    I    + G     E+G      ++ + I+   IE     D++
Sbjct: 382 ADEIILADIYAAREKDTGIINSNMLG-DKLRERGLKCTNFHKFDDIKNYLIENAKDGDLI 440

Query: 463 VVAGKGH 469
           +  G G 
Sbjct: 441 LTVGAGD 447


>gi|325294545|ref|YP_004281059.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064993|gb|ADY73000.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 458

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 145/431 (33%), Gaps = 47/431 (10%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F+                   GA  ++ SSA    +       N  I V+      LS 
Sbjct: 52  VFIGHKAENVH-----------GANLVIHSSAVKFDNVELQEAKNLGIPVIPRA-DILSD 99

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                 G      +AV GT GK++ +S +  I   +GL      PT  +           
Sbjct: 100 IMRFKEG------VAVAGTHGKTTTSSMIATIFHIAGLK-----PTILVGGRLSILGGVN 148

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                    ++       T +                +       TN+  DH+DY+ + +
Sbjct: 149 AQSGDGNWLVAEADESDGTFLK---------------LTPTFSVITNIDADHVDYYGSFE 193

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVC 283
               A    F   +       +  +    KE++    +   R L  G+  KF  + K++ 
Sbjct: 194 NLKEA-FLDFANRVSFYGKVFLCGECQNVKEIVG---SIYKRKLIYGFSEKFDLYAKEIV 249

Query: 284 AIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +       +  + K        +PG+  + NAL A G+ + +G+    + E LE     
Sbjct: 250 PVGLGTIFDVYYKSKKLGRVKLNVPGKHNILNALGAIGVSLEVGVSFNQIAESLEMFRNA 309

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
             R E  GT   G     DYAH    +E   K ++ +    RI+V+F             
Sbjct: 310 NRRMELKGT-VNGITFIDDYAHHPTEIETSYKALKSSFPDRRIVVLFQPHRFSRTNLLWK 368

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
                L   D   ++D  P  E P K I A+ +    G +  G+  +A RT    L   D
Sbjct: 369 EFVKVLKEIDNLFISDIYPAGEKPIKGINAKNLARECGAVYCGSLKKACRTIKLELKPGD 428

Query: 461 VLVVAGKGHET 471
           V +  G G  T
Sbjct: 429 VFLSMGAGDVT 439


>gi|118618799|ref|YP_907131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
 gi|118570909|gb|ABL05660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
          Length = 525

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/531 (16%), Positives = 151/531 (28%), Gaps = 105/531 (19%)

Query: 3   LQDLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNK------ 53
           + D    +  E++    + I P +  +R++   V  DSR +  G +F+A+ G +      
Sbjct: 1   MIDYTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDH 60

Query: 54  -----------------EDGHLFIPQAIAQGAEAIVVSSAYS----------LQDFSATI 86
                                         G  AIVVS                D   + 
Sbjct: 61  AAAAVAAGAVAVLAARPV------------GVSAIVVSPEPDSTADALTGVLEHDADGSG 108

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +    L          L A  L       I+ +TG+SGK+S    V  + +  G     
Sbjct: 109 AAVLAALAKLAKAVAAELMAGGL------TIIGITGSSGKTSTKDLVAAVLKPLGEVVAP 162

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +            T S  YL   +S             A   G             
Sbjct: 163 PGSFNNELGHPWTVLRATRSTDYLILEMS-------------ARHPGNIAALARVAPPAI 209

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G   N+G  H+    +++     K  L  + +P     I+ ADD     + +       R
Sbjct: 210 GVVLNVGTAHLGEFGSREIIAQTKSEL-PQAVPASGVVILNADDPAVAAMAEVTAARVVR 268

Query: 267 VLSVGYQGKFIHLKKVCAIHN-------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           V      G                    + Q T+            + G+ QV NAL A 
Sbjct: 269 VGRATATGAGWAGPGDVWAGPVSLDRLARPQFTMHAGDAAAQVRLGVYGDHQVSNALCAG 328

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            + +  G   + V   L +   V      V T   G  +  D Y    +S+   L+ +  
Sbjct: 329 AVALECGASVSQVAAALAEAGPVSRHRMRVSTRPDGVTVIDDAYNANPDSMRAGLQALAW 388

Query: 379 ITSG-----------------RIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVT 416
           I  G                 R   V G   +           I      LD++ + +V 
Sbjct: 389 IARGEAESTAASQPGVRPQSRRSWAVLGEMAELGADAITEHDHIGRLAVRLDVSRLVVVG 448

Query: 417 DDNPRSEDPEKI-RAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                      I    ++ G      +   +R  A+      +   DV+++
Sbjct: 449 T----GRSMSAIYHGAVMEGSWGTEAVSVPDRDAALALLRAEIQPGDVVLI 495


>gi|110802264|ref|YP_699749.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           SM101]
 gi|123047139|sp|Q0SQ58|MURC_CLOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110682765|gb|ABG86135.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens
           SM101]
          Length = 457

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 145/426 (34%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 53  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 113 N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 166 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKDINHIKDT-F 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F +L+P +   I  ADD   K+VM+    A C VL+ G     I  + +         
Sbjct: 206 KQFVKLIPNDGYIIGNADD---KKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCAT 262

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   +I+ VF                   D 
Sbjct: 323 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDD 381

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 382 CDELVLMDIYAAREKDLGEINSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLL 441

Query: 464 VAGKGH 469
             G G 
Sbjct: 442 TVGAGD 447


>gi|219558137|ref|ZP_03537213.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T17]
          Length = 262

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 44  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 100

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 101 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 160

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG     +      + LTTP    L   L+ +  +GV  V +E SSH L   R+DG 
Sbjct: 161 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT 220

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +   G+FTNL RDH+D+H +   YF AK  LF+
Sbjct: 221 RFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 253


>gi|326382560|ref|ZP_08204251.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198679|gb|EGD55862.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 492

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 101/475 (21%), Positives = 160/475 (33%), Gaps = 81/475 (17%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIA---QGAEAIVVSSAYSLQDFSATIRS- 88
           DSR +      +A+   G +   GH   P+A+     G   +V + A    D    + + 
Sbjct: 48  DSRGV------LALRTRGAQVRIGHS--PEALDVLDGGPTVVVTTRAAVPDDNPELVEAR 99

Query: 89  --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSF 145
               P++        L            +  + ++GT GK+S  S      Q  G   SF
Sbjct: 100 RRGIPVVYRPEVLALLM---------QGDRTVLISGTHGKTSTTSMSVVALQHCGVDPSF 150

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G     S     +                     V     + S   L Q+        
Sbjct: 151 AVGGELNESGTNAHHGSG-----------------DVFVAEADESDGSLLQY-----TPD 188

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+  DH+D+  ++ AY       F  L+      ++  DD  +  +  R      
Sbjct: 189 IVVVTNIEADHLDFFGSEAAYVQV-FDDFVALIRSGGTLVLCLDDPGAAALAARCQADCA 247

Query: 266 R----VLSVGYQGKFI--------HLKKVCAIHNKQQVTISV------EGKDFDFLFPLP 307
           R    VL  G  G            L  V         T+ +      + +  +    LP
Sbjct: 248 RRGVTVLGYGSTGHTPVDGVPVVAELAAVVPHGAGSVATVRLSSPLVEKAQTRELAVTLP 307

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A   C   G D   V   +E    V  RFE  G  +R   +Y DYAH   
Sbjct: 308 GRHMALNALGALIACTRTGQDVDAVAAGIESFGGVHRRFELRG-RARDVDVYDDYAHHPT 366

Query: 368 SLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +  +L   R + +   GR+I VF         +       AL LAD  IV D     E 
Sbjct: 367 EVRAVLTAAREVVAAGSGRVIAVFQPHLYSRTAEFAPQFGEALSLADDVIVADVYGAREQ 426

Query: 425 PE-----KIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVH 473
           P+     ++ ++ + G   F+   +R   I  A+ E   + D+++  G G  T+ 
Sbjct: 427 PQPGVTGRLISDAVAGPAAFVPDASR---IADAVAERARRGDLVLTIGAGDITMQ 478


>gi|114321341|ref|YP_743024.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311123|sp|Q0A6K3|MURC_ALHEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114227735|gb|ABI57534.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 479

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 138/412 (33%), Gaps = 43/412 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+A+VVSSA    +          I VV    + L+      YG      +AV GT G
Sbjct: 77  QGADAVVVSSAVQADNPEVQAAREYRIPVVRRA-EMLAELMRFRYG------IAVAGTHG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL      PT  I      +             ++       + +
Sbjct: 130 KTTTTSLVASVLAEGGLD-----PTYVIGGRLNSSASHARLGSGRY-LVAEADESDASFL 183

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +K +    TN+  DH++ +             F   LP    A+
Sbjct: 184 ---------------HLKPMMAVVTNIDADHLETYGGDFDQLRHTFDEFLHHLPFYGLAV 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  DD   +++         +V S G+ +   +    +     + + T+      F    
Sbjct: 229 LCHDDPVLRDL---GPEIARQVRSYGFAEDADLRAVDIEQSGRRTRFTVVDGEATFPVEV 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVD 361
            LPG   V NAL A  +   + +D A +   L++   +  RF+  GT   G     +  D
Sbjct: 286 NLPGRHNVQNALAAIAVARELHVDVAAIQRALQRFQGIGRRFQDHGTLRFGDARVTLVDD 345

Query: 362 YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    +   L+ +R    G R++VVF                  L  AD  +VT+   
Sbjct: 346 YGHHPREIAATLRAVRDGWPGRRVLVVFQPHRYSRTRDLFEDFARVLSEADALLVTEVYA 405

Query: 421 RSEDPEK------IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             E P        + A I   G    +      E  +    +    D+++  
Sbjct: 406 AGEPPVAGATGRGLCAAIRARGQVNPVFVETLEELQQVLPGVARDGDLVLTL 457


>gi|126701142|ref|YP_001090039.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile 630]
 gi|254977143|ref|ZP_05273615.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-66c26]
 gi|255094472|ref|ZP_05323950.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile CIP
           107932]
 gi|255102728|ref|ZP_05331705.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-63q42]
 gi|255308549|ref|ZP_05352720.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile ATCC
           43255]
 gi|255316223|ref|ZP_05357806.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-76w55]
 gi|255518885|ref|ZP_05386561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-97b34]
 gi|255652064|ref|ZP_05398966.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-37x79]
 gi|260685038|ref|YP_003216323.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260688696|ref|YP_003219830.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
 gi|306521800|ref|ZP_07408147.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-32g58]
 gi|123066482|sp|Q181B7|MURC_CLOD6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115252579|emb|CAJ70422.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           difficile]
 gi|260211201|emb|CBA66689.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260214713|emb|CBE07377.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
          Length = 450

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 148/424 (34%), Gaps = 48/424 (11%)

Query: 65  AQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--- 115
            QGA   +      +S   ++  ++A +  +   LV    +  L +  +   G+      
Sbjct: 43  DQGATIYIGQKKDNISDDVNMVVYTAAVHPDNEELVAAKEKNKLVMNRATFLGQIMREYK 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKA 173
           N +AV+GT GK+S  S +  I + + L    +  G  S I      N     S  ++ +A
Sbjct: 103 NSIAVSGTHGKTSTTSMLSTIFEYADLDPTILVGGNLSMIGG----NVKIGNSNHFITEA 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y+ S                               N+  DH+DY         A    
Sbjct: 159 CEYVDSF-------------------LNFNPKISIVLNVEEDHLDYFSGIDEI-KASFNK 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--V 291
           F +LLP E   II  DD    +++   ++    ++  G       + K     N      
Sbjct: 199 FGKLLPPEGYFIINGDDENIDDIL---YDVKATIIKYGRDSDNDAVIKDIHFDNSGHGIF 255

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            I  EG+D  +F   + G   +YNA  A    +  GID   + ++++    V  RFE  G
Sbjct: 256 RIEYEGRDLGEFELSVYGLHNIYNASSAIMAALVSGIDLETIRKNIKIYKGVGRRFETKG 315

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   +  DYAH    L+  L   + +    +  +F                 A   A
Sbjct: 316 -YYKNALVVDDYAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLLGEFSEAFYAA 374

Query: 411 DIAIVTDDNPRSE-DPEKIR-----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+TD     E DP  I       ++       I      + ++   E +   D+++ 
Sbjct: 375 DKVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRENVKDNDLVIT 434

Query: 465 AGKG 468
           AG G
Sbjct: 435 AGAG 438


>gi|254479394|ref|ZP_05092727.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
 gi|214034663|gb|EEB75404.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
          Length = 857

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 148/373 (39%), Gaps = 30/373 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK++V   V  I +  G   + +G T+T   +  D  +          A +
Sbjct: 457 PIVSITGTNGKTTVTRMVAHILKTYG---YTVGMTTTDGIYIDDKCIYKGDNTGPKSART 513

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L+ + +    +E +  G+ +  L       G  TN+  DH+  D   T +     K  L
Sbjct: 514 CLADKNIDAAVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKA-L 572

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVC 283
             E +  +  +++ ADD  +  + K+A                       G  +++K+  
Sbjct: 573 VVEAVKDDGYSVLNADDPMTPYLAKKAKGKIIYFSMYDNNLTVKRHIENGGIAVYVKEGV 632

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
            +    Q+   V  ++            + N+L A      + +   ++ + ++  +   
Sbjct: 633 IVIANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTFYPDT 692

Query: 342 --VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
              PGRF      S   R+ VDY H    ++ +++  R + + R+I V G  GDR     
Sbjct: 693 THNPGRFNLFNIGS--FRVLVDYGHNVEGIKKVIEAARKLDANRLIGVIGVPGDRMDSSI 750

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKGNRI------EAIRT 451
             +G++     D   + +D + R     ++   +  G I G ++K N        EA++ 
Sbjct: 751 FKVGEVCGKGFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKETEALKA 810

Query: 452 AIEMLNKQDVLVV 464
           A+      D++VV
Sbjct: 811 AMHSAEAGDLIVV 823


>gi|254246422|ref|ZP_04939743.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871198|gb|EAY62914.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 468

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 143/403 (35%), Gaps = 29/403 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
              + VS+DSR +  G +FVA+ G + D H F+          +    A +     A   
Sbjct: 24  VTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPAD 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++    TR  L   A     + P  ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  VAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
                +++            + L   L  LS+     V     +H  +   L  +     
Sbjct: 136 ATAGNLNN-----------DVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAPTV 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +    LP +  A+  ADDAY+      A      
Sbjct: 185 ALVNNAQREHQEFMATVEAVALEHAAVI-HALPPDGVAVFPADDAYAGIWRVAATGNRIL 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++ +  +  +  ++    +  ++ I              GE    NAL A    +  G
Sbjct: 244 DFAL-HDAERQNDAQIVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAATAAALGAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           +  + + + LE    V GR +    +     G  +  D Y    +S+   +  +    + 
Sbjct: 303 VALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDVLAAHPAP 362

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
           R++V+   G   D+G    R I         D      D  R 
Sbjct: 363 RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|192292413|ref|YP_001993018.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           TIE-1]
 gi|229620427|sp|B3QFN0|MURC_RHOPT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|192286162|gb|ACF02543.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           TIE-1]
          Length = 467

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 142/420 (33%), Gaps = 49/420 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +G     +     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVAALLD-AGDLDPTVINGGIINAYGTNARLGGGDWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T  A  +A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----- 300
           +  D    + ++ +  +          Q     L  + A        ++   +       
Sbjct: 216 MCIDHPVVQTLVGKIEDRRIITYGENPQADA-RLLDLAASGGGSTFKVAFRDRKAGTAHE 274

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D   P+PG     NA  A  +   +G+    + + L     V  RF   G    G  I
Sbjct: 275 IADLKLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTGEW-NGVTI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    +  +LK  R  TSG++I V                    + AD  IV D 
Sbjct: 334 IDDYGHHPVEIAAVLKAARQSTSGKVIAVVQPHRFSRLQSLFEEFCTCFNDADAVIVADV 393

Query: 419 NPRSEDP-EKIRAEIIHGIPGFIEKGNR-IEAIRTAIEMLN-------KQDVLVVAGKGH 469
            P  E P E I  +  H + G    G+R + A++ +  +           D +V  G G+
Sbjct: 394 YPAGEAPIEGIDRD--HFVLGLRAHGHRDVVALQDSASLAGVVAGLAHSGDYVVCLGAGN 451


>gi|302384555|ref|YP_003820377.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
 gi|302195183|gb|ADL02754.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
          Length = 459

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 98/433 (22%), Positives = 170/433 (39%), Gaps = 46/433 (10%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENIL 118
            AIA G  A  +     +  ++A +  + P       +    L  + L G+   + EN +
Sbjct: 55  AAIAYGQRAENIKEGIDVVVYTAAVHPDNPEYAEAKEKGLPILSRAELLGQMMKNYENSI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV+GT GK++  S + +I   +  +   I     ++S   + R+  P  +++ +A  Y +
Sbjct: 115 AVSGTHGKTTTTSMITEIL-LAAEADPTISVGGILNSIGGNIRVGGPG-LFVTEACEYTN 172

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S      ++E                      N+  DH+D+ +  +   ++  RLF E L
Sbjct: 173 SFLSFFPTME-------------------VILNIEADHLDFFKDIKDIRHS-FRLFAEKL 212

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVE 296
           P     +I  D    +E+ +      C+V++ G +    +  +        + T  + ++
Sbjct: 213 PPNGSLVINNDIESREEITE---GLPCQVITYGKKPGSRYQAEAIRFDEYARATYDLKLD 269

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G   D     +PGE  VYN+L AA +C  +GI+  L+ + L++      RFE  G  S G
Sbjct: 270 GNVVDTVTLGVPGEHNVYNSLAAAAVCTELGIEFDLIKKGLKRFTGTNRRFEKKGELS-G 328

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I  DYAH    +   L+  +     ++ V F                 AL LAD  I+
Sbjct: 329 VTIIDDYAHHPQEIRATLETAKHYPHNKLWVAFQPHTYTRTKAFLEEFADALSLADEVIL 388

Query: 416 TDDNPRSEDPE------KIRAEI-IHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            D     E  +       I   I   G+   +    + IE     +E     D+L+  G 
Sbjct: 389 ADIYAARETDDLGISSGDIAERIGKRGVKAHYFSSFDEIE--TFILENCIHGDLLITMGA 446

Query: 468 GHETVHIVTNGEK 480
           G     IV  GEK
Sbjct: 447 GD----IVKVGEK 455


>gi|206561803|ref|YP_002232568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
 gi|198037845|emb|CAR53789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
          Length = 468

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 143/403 (35%), Gaps = 29/403 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
              + VS+DSR +  G +FVA+ G + D H F+          +    A +     A   
Sbjct: 24  VTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPAG 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++    TR  L   A     + P  ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  VAMPMIAGGETRAALGALAHGWRMRFPLPVVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
                +++            + L   L  LS+     V     +H  +   L  +     
Sbjct: 136 ATAGNLNN-----------DVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAPTV 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +    LP +  A+  ADDAY+      A      
Sbjct: 185 ALVNNAQREHQEFMATVEAVALEHAAVI-HALPPDGVAVFPADDAYAGIWRVAATGNRIL 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++ +  +  +  ++    +  ++ I              GE    NAL A    +  G
Sbjct: 244 DFAL-HDAERQNDAQIVGRMHGDELAIDTPAGAVTVRLRALGEHNARNALAATAAALGAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           +  + + + LE    V GR +    +     G  +  D Y    +S+   +  +    + 
Sbjct: 303 VALSAIRQGLEAFEPVKGRLQVKPASVGSLAGATVVDDTYNANPDSMRAAIDVLAAHPAP 362

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
           R++V+   G   D+G    R I         D      D  R 
Sbjct: 363 RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
 gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 471

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 143/379 (37%), Gaps = 30/379 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKE-DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           V  +S+ IQ G +F+A+      DGH F+  A+A+GA+A++VS             +N  
Sbjct: 29  VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALARGADAVIVSKLIDNN-------ANDK 81

Query: 92  ILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           I++V+NT   LS  A+    +      + +TG+ GK+S    + ++      +       
Sbjct: 82  IILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKVFSTYYKTFASRKNF 141

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + +     +      +  Y    LS              SS G  Q  +  + L     T
Sbjct: 142 NNLLGMLLNLASVPINTEYAIFELS-------------TSSPGGLQKLVKILPLNIAVLT 188

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269
           N+   H ++  + +    AK  +F  L+ K   A+I +D  +  + ++  +  G   V +
Sbjct: 189 NINSAHTEFFNSLEHLTEAKCEIFNGLVNK-GIAVINSDSMFYTKQLEYINKLGINNVFT 247

Query: 270 VGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G   +           A + K  + IS  G D+ F   + G  Q +N      +     
Sbjct: 248 FGTHQEANSNITNYYYDADNQKSVINISCNGYDWQFNTQILGYGQAFNIAAVMLVSNICK 307

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           I+   V E +  L    GR +    N  S    I  D Y     S++  L  +  I + R
Sbjct: 308 INLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALDLLGQIKAKR 367

Query: 384 IIVVFGCGGDRDQGKRPIM 402
            + + G   +     +   
Sbjct: 368 KVAILGDMLELGNNTKEHH 386


>gi|253575689|ref|ZP_04853025.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845027|gb|EES73039.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 458

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 135/414 (32%), Gaps = 45/414 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S+A    +          I V+  +     + A  L  +   N +AV G  GK
Sbjct: 65  GADLVVYSTALPQDNVERLEAQEQGIPVLHRS----QMLARLLNER---NGVAVAGAHGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S +    +  G     I     I     D               +           
Sbjct: 118 TTTSSMIALAMELCGTDPTYI-----IGGEIMDMGTN-----------AKAGQGKCVVAE 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + S     Q+         G  TN+  DH++ +             F   +  +  A++
Sbjct: 162 ADESDGSFLQYY-----PSLGVVTNIEADHLENYGGDFNRLKEAYVQFLNQIKPDGKAVV 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FL 303
             DD   +E++ R  +     ++ G +               + VT  +   D +     
Sbjct: 217 CGDDPNIRELLPRVQSP---TITYGIE-TNCDYTAREIELGDRCVTFKMYQGDRELGTVE 272

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   VYNA+    +C+  GI    V++ L   H    RF+ +G    G  I  DYA
Sbjct: 273 LSVPGRHNVYNAMATVIVCMEAGIPFDEVVKALRHFHGAKRRFQVLGEK-NGILIIDDYA 331

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRS 422
           H    ++  +   +  T  RII VF                 A   AD  I+TD   P  
Sbjct: 332 HHPTEIQATIAAAKA-TGKRIIAVFQPQRYTRTFFLLDAFSRAFGDADEVIITDIYSPAG 390

Query: 423 EDP------EKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E         K+   I     PG      + + I      L   D+++  G G 
Sbjct: 391 EKAIEGVSSSKLVELIKQNSNPGARYLPTKQDVIADLQHRLKPGDLVLTMGAGD 444


>gi|227539119|ref|ZP_03969168.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300770625|ref|ZP_07080504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241020|gb|EEI91035.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300763101|gb|EFK59918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 433

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 149/390 (38%), Gaps = 32/390 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R+I  G +F A+ G   +G+ F  QA+  GA  +++  A   +D           
Sbjct: 16  VSTDTRNILPGSLFFALKGANFNGNSFADQALQTGASYVIIDEASYAKDG--------RY 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+         ++ VTGT+GK++    +     +   +    G    
Sbjct: 68  ILVDNVLESLQKLANHHRKTLSIPVIGVTGTNGKTTTKELLHATLSQKFKTYATKG---- 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +       P+ L   LS  S+  +  + + A+         D  +   G  +N+
Sbjct: 124 ------NLNNHIGVPLTL---LSVDSTIQIAVIEMGANHLKEIAFLCDIAEPTHGLISNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ L        + AD+ +  E+   A      V++ G+
Sbjct: 175 GKAHLEGFGSFEGVKKTKGELYDYLQNHNGTLFLQADNPHLNEMA--ATRKISEVVTYGF 232

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 + K+       Q+    + K   +     L G +   N L A  + +  G+ + 
Sbjct: 233 AETNDVIGKLLKADPLLQIEWKEKDKPDSYTVHTQLTGSYNTENFLAAIAVGLYFGVSAE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA-HTSNSLEMILKNIRTITSGRIIVV-- 387
            +   +E+      R +   T      I  DY    ++S+   L NI  I + R +++  
Sbjct: 293 QINTGIERYTPKNNRSQVTKTEHN--TIIADYYNANASSMAAALDNIEVIDASRKVIILG 350

Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIV 415
             F  G + D     ++ +     AD  I 
Sbjct: 351 DMFEMGDESDAEHEKVVQRAKSIGADRLIF 380


>gi|255657475|ref|ZP_05402884.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-23m63]
 gi|296449070|ref|ZP_06890860.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296879893|ref|ZP_06903866.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
 gi|296262163|gb|EFH08968.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296429182|gb|EFH15056.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
          Length = 450

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 148/424 (34%), Gaps = 48/424 (11%)

Query: 65  AQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--- 115
            QGA   +      +S   ++  ++A +  +   LV    +  L +  +   G+      
Sbjct: 43  DQGATIYIGQKKDNISDDVNMVVYTAAVHPDNEELVAAKEKNKLVMNRATFLGQIMREYK 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKA 173
           N +AV+GT GK+S  S +  I + + L    +  G  S I      N     S  ++ +A
Sbjct: 103 NSIAVSGTHGKTSTTSMLSTIFEYADLDPTILVGGNLSMIGG----NVKIGNSNHFITEA 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y+ S                               N+  DH+DY         A    
Sbjct: 159 CEYVDSF-------------------LNFNPKISIVLNVEEDHLDYFSGIDEI-KASFNK 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--V 291
           F +LLP E   II  DD    +++   ++    ++  G       + K     N      
Sbjct: 199 FGKLLPPEGYFIINGDDENIDDIL---YDVKATIIKYGRDSDNDAVIKDIHFDNSGHGIF 255

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            I  +G+D  +F   + G   +YNA  A    +  GID   + ++++    V  RFE  G
Sbjct: 256 RIEYQGRDLGEFELSVYGLHNIYNASSAIMAALVSGIDLETIRKNIKIYKGVGRRFETKG 315

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   +  DYAH    L+  L   + +    +  +F                 A   A
Sbjct: 316 -YYKNALVVDDYAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLLGEFSEAFYAA 374

Query: 411 DIAIVTDDNPRSE-DPEKIR-----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+TD     E DP  I       ++       I      + ++   E +   D+++ 
Sbjct: 375 DKVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRENVKDNDLVIT 434

Query: 465 AGKG 468
           AG G
Sbjct: 435 AGAG 438


>gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
          Length = 828

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/497 (18%), Positives = 174/497 (35%), Gaps = 53/497 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQ 66
           ++  ++I    I  +      I+ + +DSR +      +F A+   + DG  +I    A+
Sbjct: 6   ENIAQIIGARRIGELSA---TIDWLLTDSRSLSFPEETLFFALATKRNDGARYIRDLYAR 62

Query: 67  GAEAIVVSSA-YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           G    VVS       +   +   +  +LVV +  K L   A +   +    ++ +TG++G
Sbjct: 63  GVRNFVVSEEGLKEAEALGSPLPDLNLLVVPSPLKALQKLAEQHRDRFQIPVIGITGSNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+               T S  + ++++  P  ++     + L+       
Sbjct: 123 KTVVKEWLHQLLS--------PERVITRSPRSYNSQIGVPLSVWQMNEQTELAILEA--- 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +   + IK   G  TN+G  H +   + Q     K+ LF++        I
Sbjct: 172 --GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKDC----DVVI 225

Query: 246 IYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
              DD + S  V K   +A     S     + +++ KV    N   ++      D  F  
Sbjct: 226 YNGDDEFISNCVSKSIFSAREIAWSRRDMERPLYINKVEKQENSTVISYRYLDMDNTFTL 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P   +  + N+L     C+ + + +  + E + KL  V  R E     +    I   Y  
Sbjct: 286 PFIDDASIENSLNCLAACLYLMLPAGQITERMAKLEPVAMRLEVKEGKNGCLLINDSYNS 345

Query: 365 TSNSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
              SL++ L     R+ + G    +            P + +    L         N R 
Sbjct: 346 DLGSLDIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLV--------NSRG 397

Query: 423 -EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI--EMLNKQDVLVVAGKGH---ETVHIVT 476
            E    +  EI      F         I  A   +     D +   GKG    E   I+ 
Sbjct: 398 IERVIGVGNEISSCASRFN--------IEKAFYPDTAALIDAI---GKGELSLENEIILI 446

Query: 477 NGEKKMSVDC--DIIRE 491
            G +K   D   +++  
Sbjct: 447 KGARKFGFDALTEVLER 463


>gi|168183628|ref|ZP_02618292.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|237797009|ref|YP_002864561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Ba4
           str. 657]
 gi|259509765|sp|C3KWA4|MURC_CLOB6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182673211|gb|EDT85172.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|229261312|gb|ACQ52345.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum Ba4
           str. 657]
          Length = 458

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 147/430 (34%), Gaps = 60/430 (13%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA   +     +++D     ++A I S+ P ++          +   FL         
Sbjct: 53  DKGAHIYIGHKKENIKDADLIVYTAAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKY 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A++GT GK++  S +  +  ++ +    I     +     + R+      ++ 
Sbjct: 113 N-----IAISGTHGKTTTTSMLSHVALKANVDP-TILVGGNLDIINGNVRVGKSD-FFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y SS                           G+  N+  DH+DY++      NA  
Sbjct: 166 EACEYKSSFLKFF-------------------PYIGAILNIDADHLDYYKDLDDIKNAFS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
           + F +L+PK+   + Y +D   + ++K A    C V++ G     I    +         
Sbjct: 207 K-FIKLIPKDGYLVAYGEDKNIQSIIKEA---SCNVITYGINSGDIQAHNIEYDEKACGN 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +    K F     +PG+  + N+L +  + +A  +    ++E +E       RFE  
Sbjct: 263 FDVVKNNQKLFSVKLNVPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    +  DYAH    +   L   +     ++  VF                   D 
Sbjct: 323 GCKNN-ITVIDDYAHHPTEISATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTKCFDK 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIR-TAIEMLNKQ 459
           AD  I+ D     E    I +  + G            F +  +    I+   IE     
Sbjct: 382 ADEIILADIYAAREKDTGIISSDMLGDKLRDRGLKCTNFHKFND----IKNYLIENAKDG 437

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 438 DLILTVGAGD 447


>gi|85714969|ref|ZP_01045954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
 gi|85698166|gb|EAQ36038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
          Length = 465

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 136/386 (35%), Gaps = 27/386 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S DSR I  G  + AI G+  DGH F+  A+  GA   VV +A   Q       ++
Sbjct: 17  INGISIDSRTIAPGEAYFAIKGDVHDGHAFVDAALRAGAALAVVEAAQRDQ-----FAAD 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L+VD+    L   A     +    ++AVTG+ GK+S    ++ +    G +   +  
Sbjct: 72  APLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSVVDAQGKTHASVAS 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                 +                 +  +  G     +  ++      
Sbjct: 132 FNNHWGVPLSLARCPADARF-------------AVFEIGMNHAGEITPLVKMVRPHVAVI 178

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVL 268
           T +   H+++    +A  +AK  +FE + P     ++  D+A    +  RA      R++
Sbjct: 179 TTVEPVHLEFFAGIEAIADAKAEIFEGVEP-NGAVVLNRDNAQFARLHGRAKKLGIARIV 237

Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S G  +     L  V        V   + G +  +   +PG     N+L         G 
Sbjct: 238 SFGADEKADARLLDVALHPTCSAVHAEILGHELTYKLGMPGRHIAMNSLAVLASSSLAGA 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVD--YAHTSNSLEMILKNIRTITSGRI 384
           D AL    L +     GR         GG  I +D  Y     S+   L  +     G++
Sbjct: 298 DLALAGLALSQAQPAAGRGVRRALAVPGGEAILIDESYNANPASMAAALGVLGGAGIGKL 357

Query: 385 ---IVVFGCGGDRDQGKRPIMGKIAL 407
              I V G   +       +   +A 
Sbjct: 358 GRRIAVLGDMLELGPKSADLHRGLAE 383


>gi|319411055|emb|CBY91455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alan ine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis WUE 2594]
          Length = 452

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 148/421 (35%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L + A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLAALQMVAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|260886503|ref|ZP_05897766.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|330839653|ref|YP_004414233.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|260863646|gb|EEX78146.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747417|gb|AEC00774.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
          Length = 457

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 140/438 (31%), Gaps = 58/438 (13%)

Query: 49  IVG---NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           + G   +   GH         GAEAIVVS+A         I    P + V+  R  L  F
Sbjct: 46  LKGLGAHIHHGHR-AENV--HGAEAIVVSTA---------IPETNPEI-VEAARLGLRRF 92

Query: 106 ASRLYGK---HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDN 160
                     +    +AV G  GK++  S +      +G+S   I  G    +   A+  
Sbjct: 93  HRSDINAALLNAAKGIAVAGAHGKTTTTSMLGVALDHAGISPTIIIGGEVDVLGGNAKLG 152

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           +             S+L                        ++      TN+  DH+D++
Sbjct: 153 KGEYLVSEADESDGSFLK-----------------------LRPHIAVVTNIEDDHLDHY 189

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHL 279
            T      A  R F E +     A++  D+   +++   A   G +V+S           
Sbjct: 190 GTLANIRKA-FREFLENIKPGGHAVLCFDNENVRDI---AQTLGRKVISYAIDHEADYRA 245

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            K+         ++  EGKD       LPG   V +AL      ++IG+    +   L  
Sbjct: 246 GKIEMHGAGVDFSVLHEGKDLGRVRLNLPGRHNVLDALATVVTGLSIGLTVEQMAAGLAL 305

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
            H    RF+  G   +   +  DYAH    +   L   R     RII  F          
Sbjct: 306 FHGAKRRFQTKG-RVQDVWVVDDYAHHPTEIATTLLAARQTKPRRIICAFQPHRYSRTKL 364

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRT 451
                  A   AD+ ++TD     E P        I   +        +    R +    
Sbjct: 365 LAAEFGGAFREADVLVLTDIYSAGEAPIEGVSGRTILDAVRQTTGQDAVYIPQREDIAAH 424

Query: 452 AIEMLNKQDVLVVAGKGH 469
              +    D+++  G G 
Sbjct: 425 LAAIAQSGDIVLTMGAGD 442


>gi|312878093|ref|ZP_07738028.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795135|gb|EFR11529.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 455

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 149/406 (36%), Gaps = 38/406 (9%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    I +    L +    +FL L          +N++A++GT GK++  S
Sbjct: 64  VIYTAAISKDNPELIAAKRMNLKIYERAEFLGLLMKNF-----KNVIAISGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++        PT  + +F +          ++  +  YL  +   +V      
Sbjct: 119 MIGYILKKA-----CYNPTILVGAFVKQL-----GGNFVIGSKEYLVVEACEYVDS---- 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +  N+  + F + +P     +   DD 
Sbjct: 165 -------FLKFNPTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGE 309
             K+V+ + H     + +   +   I    +       +  +     +        +PG 
Sbjct: 217 NVKDVISKLHTQVVCIST--KEKADIFAGNISCNDGYYEFDVKNNNDEILAHIKLNIPGF 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYNAL A  +   +G++S  +   L +      R E VG    G  ++ DYAH    +
Sbjct: 275 HNVYNALAAFAVTSKLGVESLTIEHALSEFCGASRRLEKVG-EFDGIYLFDDYAHHPTEI 333

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KI 428
           +  L  ++ ++ G++  +F                 +L LAD  IVTD     E     I
Sbjct: 334 KATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAESLKLADKVIVTDVYAAREKNTFGI 393

Query: 429 RAE----IIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
            +E     +  I    E  +  E I    ++   K D++   G G 
Sbjct: 394 TSEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKGDIIATIGAGD 439


>gi|39936591|ref|NP_948867.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           CGA009]
 gi|48428302|sp|P61682|MURC_RHOPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39650447|emb|CAE28970.1| UDP-N-acetylmuramate-alanine ligase [Rhodopseudomonas palustris
           CGA009]
          Length = 467

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 146/421 (34%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +G     +     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVAALLD-AGDLDPTVINGGIINAYGTNARLGGGDWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T  A  +A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF---- 300
           +  D    + ++ +  +   R+++ G        L  + A        ++   +      
Sbjct: 216 MCIDHPVVQTLVGKIEDR--RIITYGENPQADARLLDLAASGGGSTFKVAFRDRKAGTAH 273

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D   P+PG     NA  A  +   +G+    + + L     V  RF   G    G  
Sbjct: 274 EIADLKLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTGEW-NGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I  DY H    +  +LK  R  T+G++I V                    + AD  IV D
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQSTAGKVIAVVQPHRFSRLQSLFEEFCTCFNDADAVIVAD 392

Query: 418 DNPRSEDP-EKIRAEIIHGIPGFIEKGNR-IEAIRTAIEMLN-------KQDVLVVAGKG 468
             P  E P E I  +  H + G    G+R + A++ +  +           D +V  G G
Sbjct: 393 VYPAGEAPIEGIDRD--HFVLGLRAHGHRDVVALQDSASLAGVVAGLAHSGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|260905306|ref|ZP_05913628.1| UDP-N-acetylmuramate/alanine ligase [Brevibacterium linens BL2]
          Length = 466

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 100/446 (22%), Positives = 154/446 (34%), Gaps = 49/446 (10%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKF 101
           VA+ G+   G   +      GA   +  SA +L +      S+ IR + P LV    R  
Sbjct: 37  VAVSGSDAKGSAGVDVLRTLGARVEIGHSADNLGEADTLVISSAIRKDNPELVEAERRGL 96

Query: 102 L-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTIS 154
                    AS + GK     +AV GT GK++  S      Q  GL    +  G  ST  
Sbjct: 97  RILHRSGALASLMAGK---RAVAVAGTHGKTTTTSMTTVALQACGLDPSFVIGGVLSTTG 153

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           +                   ++L +  V     + S      +     +   G  TN+  
Sbjct: 154 TN------------------AHLGTGDVFVAEADESDGSFLLY-----EPTIGILTNVEA 190

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+DY+ T +    A +     +       I  ADD  S +V ++A   G  V+  G   
Sbjct: 191 DHLDYYGTPEKVREAFVEFCAGIGADGGTVIACADDPGSLDVAQQARAQGTSVILYGTSE 250

Query: 275 KFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 +        +  + V G  +        PG     NA  A  +  ++G D A  
Sbjct: 251 SADVRLRELQSGLVSEFVLDVPGQAEPLPVALRQPGTHNALNATAAIAVAHSLGADVAKA 310

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGC 390
              L        RFE  G  + G R+  DYAH    L  +L   R +    GR+  +F  
Sbjct: 311 ASGLGGYGGTRRRFEERGIAA-GVRVIDDYAHHPTELRAVLSAARGVVTDEGRVWAIFQP 369

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNR 445
                  +       AL LAD  +V D  P  EDP       + A+ +          + 
Sbjct: 370 HLYSRTMEFRTEFGEALGLADEVVVLDVFPAREDPVPGVTGALIADRVPH-ENVTFVESF 428

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHET 471
            EA+      +   D+++  G G  T
Sbjct: 429 SEAVPYVAARVRPGDLVLTLGAGDVT 454


>gi|124265651|ref|YP_001019655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
 gi|124258426|gb|ABM93420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
          Length = 470

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 140/382 (36%), Gaps = 23/382 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V SD+R ++AG +FVA+ G + D H F+PQA          + A +         +    
Sbjct: 30  VHSDTRTLRAGDLFVALKGERFDAHDFLPQAR--------AAGAVAAIAEHGLAEAGLAG 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V ++R  L    +    +    ++AVTG++GK++V   +  I +        +G  + 
Sbjct: 82  LHVADSRAALGTLGANWRARMSLPLIAVTGSNGKTTVTQMIASILR------AWVGDAAF 135

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +    +N +  P  +   +  +    +    V +  +  G                 N 
Sbjct: 136 ATEGNFNNDIGVPLTLLRLRQDADTWHR-AAVVELGMNHVGEIAQLARMAAPTVALVNNA 194

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H ++  + +A       + E +L     A+  +DDA++   + +A       L+   
Sbjct: 195 QREHQEFMASVEAVARENGAVIE-VLGANGTAVFPSDDAHAA--VWQALAGTRPTLTFSL 251

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +G    + +     +     +            + G   V NAL A    +A G     V
Sbjct: 252 EGPSDLVAEAVWSGDHWAAVLHTPAGATAIRLRVAGWHNVKNALAATACALAAGCPLEAV 311

Query: 333 LEHLEKLHVVPGRFEF--VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
              LE    V GR +   +    R   +  D Y    +S+   +  + T+   R +V+  
Sbjct: 312 ARGLEAFEPVKGRSQVKALQRGGRAVTLVDDSYNANPDSVRAAIDVLATLPGPRWLVLGD 371

Query: 390 CGGDRDQGK--RPIMGKIALDL 409
            G   DQG      +G+ A   
Sbjct: 372 MGEVGDQGPAFHAEVGRYAAAC 393


>gi|295835883|ref|ZP_06822816.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295825750|gb|EFG64450.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/431 (20%), Positives = 158/431 (36%), Gaps = 43/431 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A+   A+VVSSA    +          I VV  +       A+ +
Sbjct: 54  GATVHLGHD--AAHLAEDTSAVVVSSAIREDNPELVRARELGIPVVHRSDA----LAALM 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
            G  P   LAV GT GK++  S +       G   S+ IG                    
Sbjct: 108 TGTRP---LAVAGTHGKTTTTSMLAVSLTTLGLDPSYAIG-----GDLDAPGSNAHHGTG 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +  A +  S +                              N+  DH   + + +  + 
Sbjct: 160 EIFVAEADESDRSFHTY-----------------APEVAVVLNVELDHHANYASIEEIYE 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVG-YQGKFIHLKKVCAIH 286
           +    F   +      +I AD   ++E+ +R    A   +++ G  +   + ++KV    
Sbjct: 203 S-FETFVGKIVPGGTLVISADHEGARELTRRVRERADLTIVTYGSAEDADVRVRKVSPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT++++GK   F   +PG    +NA+ A    +++G+    +   L     V  R 
Sbjct: 262 LTSEVTVAIDGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  G  + G ++   YAH    +   L+ +R    GRI+VVF         +       A
Sbjct: 322 QLKGEAA-GVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRTQELGKEMGQA 380

Query: 407 LDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGF----IEKGNRIEAIRTAIE-MLNKQD 460
           L LAD ++V D  P  EDP E + +E+I          +   +  + +  A+  M    D
Sbjct: 381 LALADSSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGD 440

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 441 LVLTMGAGDVT 451


>gi|296313578|ref|ZP_06863519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839879|gb|EFH23817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 452

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L + A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLTALQMVAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGIALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN-VKVGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
 gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
          Length = 821

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 150/418 (35%), Gaps = 35/418 (8%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +   E+ + +    +     +I+ + +DSR +      +F A+   + DGH +I +   +
Sbjct: 3   ETIEEITSVMGAERIGNAPARIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIHELYER 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G    VVS        +     +T  L V N  + L    ++   +    ++ +TG++GK
Sbjct: 63  GVRNFVVSDLPE----NGEAYVDTNFLKVANPLRALQRLVAKHREQFQIPVVGITGSNGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + V  ++ Q+               T S  + ++++  P  ++L    + L         
Sbjct: 119 TIVKEWLYQLLS--------PERIITRSPRSYNSQIGVPLSVWLLNEHTELGIFEA---- 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              S  G  +     I+   G  TN+G  H +   + Q     K++LF++        I 
Sbjct: 167 -GISEMGEMEALRPIIQPTIGVLTNIGGAHQENFTSLQDKCMEKLQLFKDC----DVIIY 221

Query: 247 YADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             D+   S  V K    A     S+    + + ++ +        +     G   ++  P
Sbjct: 222 NGDNELISSCVAKSLFTAREIAWSMKDTERPLFIESISKDETGTTIKYRYLGFFKEYRIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +  + N+L    + + + +   ++ E + +L  V  R E      + G + ++ ++ 
Sbjct: 282 FIDDASIENSLNCLAVALYLMVSPEVIAERMLRLEPVAMRLE--VKEGKNGCVLINDSYN 339

Query: 366 SN----SLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           S+     + +     RT   GR        +   G       R +   +     D  I
Sbjct: 340 SDFASLDIALDFMARRTEDKGRKRTLILSDILESGQVSKLLYRQVADLVHSRGVDRII 397


>gi|325203523|gb|ADY98976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240355]
          Length = 436

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/392 (18%), Positives = 139/392 (35%), Gaps = 34/392 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ + +DSR  +AG +F A+ G + D H F+                 +        R +
Sbjct: 8   VSRIVTDSRDSRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSRED 55

Query: 90  TPI----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  L VD+T   L + A          +  +TG+ GK++V   +  + +R      
Sbjct: 56  CVAMDGALKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRR---RFG 112

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLDGIKL 204
                +T  +F           I L   L  L+ +     + +  +  G         K 
Sbjct: 113 DDAVLATAGNFNNH--------IGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKP 164

Query: 205 IAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            A    N+ R H+            AK  +++ L   +  A+I  +DA          N 
Sbjct: 165 DAALVNNVLRAHVGCGFDGVGDIAKAKSEIYQGL-CSDGMALIPQEDANMAVFKTATLNL 223

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L +
Sbjct: 224 NTR--TFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALAL 281

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           A G+    V E L+    + GR   V +  +G  +  D Y    +S++  +  +  + + 
Sbjct: 282 AAGLSLNDVAEGLQGFSNIKGRLN-VKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAP 340

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           RI V+   G   +     +  ++     D  I
Sbjct: 341 RIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 372


>gi|85373182|ref|YP_457244.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
 gi|84786265|gb|ABC62447.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 498

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 163/448 (36%), Gaps = 37/448 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V  DSR ++ G +FVA+ G   DGH F+ +A A GA A +V                 P
Sbjct: 58  GVEMDSRDVRPGDLFVALKGESMDGHRFVEKAFAAGAAAALVERPVDW-----------P 106

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++V++T   L   A     +     + VTG+ GK+ V   +    ++S           
Sbjct: 107 HVLVEDTGAALEALAHAARERADAKRIGVTGSVGKTGVKEAIFAALEKSSRGQAH----R 162

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           ++ S+     +        A++   +   G+ H        G      D ++      T 
Sbjct: 163 SVRSYNNHVGVPLSLARMPARSRYGVFEMGMNHA-------GEIAGLTDHVRPHVAVITT 215

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   HI+   + +A  +AK  +FE L+ K   A+I AD    +++   A   G  ++S G
Sbjct: 216 IAPAHIENLGSIEAIADAKAEIFEGLV-KGGTAVIPADSEQYEQLRASAEKRGVTIVSFG 274

Query: 272 --YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    L  + A +    VT  V      F    PGE  V NAL       A G D 
Sbjct: 275 RADHADVRLLDAIPAANGGSLVTAQVRDSRLCFTVAEPGEHWVSNALAVLAAVQAAGGDL 334

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIV 386
                 L +L  + GR         GG+  +    Y     S+   L+ +    + R I 
Sbjct: 335 GAAGLALAELGGLKGRGARHHVAVTGGKALLIDESYNANPASMRATLRQLGQTPATRRIA 394

Query: 387 VFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDN--PRSEDPEKIRAEIIHGIPGFI 440
           V G   +          ++A  +     D A++  D     +    K  +  +   P F 
Sbjct: 395 VLGSMKELGDFGPEFHRQLAEPMGEADLDYAVLVGDEMLALARHLGKAGSGTLGKTPAFA 454

Query: 441 EKGNRIEAIRTAIEM--LNKQDVLVVAG 466
                 EAI  A++   L   D ++V G
Sbjct: 455 HCDGPAEAI-AALQEYGLTAGDAILVKG 481


>gi|168209731|ref|ZP_02635356.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
 gi|170712111|gb|EDT24293.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
          Length = 457

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 142/426 (33%), Gaps = 52/426 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +  S  +LQD     ++A I S+ P ++          +  +FL         
Sbjct: 53  EEGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKF 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  +   + L    +            N     S  ++ 
Sbjct: 113 N-----VAVAGTHGKTTTTSMISHVALSADLDPTIL--VGGDLDIIHGNFRVGNSEYFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S                           G   N+  DH+D+++      +   
Sbjct: 166 EACEYKQSFLRFF-------------------PYVGIILNIDADHLDFYKDINHIKDT-F 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + F  L+P +   I  ADD    EV++ A    C VL+       I  + +         
Sbjct: 206 KQFVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYEINNGDIQARNIEFNEKGCAT 262

Query: 292 --TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 E K       +PG   V N+L A  L     I++  ++  L        RFE+ 
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT      +  DYAH    ++  L   + +   +I+ VF                   D 
Sbjct: 323 GTK-NDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDD 381

Query: 410 ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  ++ D     E D  +I ++     I           +  EA+      L+K D+L+
Sbjct: 382 CDELVLMDIYAAREKDLGEINSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLL 441

Query: 464 VAGKGH 469
             G G 
Sbjct: 442 TVGAGD 447


>gi|154503754|ref|ZP_02040814.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
 gi|153795854|gb|EDN78274.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
          Length = 487

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 151/429 (35%), Gaps = 56/429 (13%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           A+GA+      A ++ D      ++A IR     L+    +K   L  + L G+   N  
Sbjct: 81  AKGAQIFYGQKASNIIDGIDCVVYTAAIRRENAELMEAVAKKIPMLTRAELLGQLMANYK 140

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV+GT GK++  S +  +   +G +   I     + +   + R+ + S I++ +A  
Sbjct: 141 TPIAVSGTHGKTTTTSMISHVL-LAGDTDPTISVGGILQAIGGNIRVGS-SGIFVTEACE 198

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S                               N+  DH+D+ +  +   ++    F 
Sbjct: 199 YTNSFLHFF-------------------PKISIILNIEADHLDFFKDLEDIRHS-FHQFA 238

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LLP +   II  +    +E+        C V++ G   +F +  +      K +V    
Sbjct: 239 ALLPSDGTLIINGEIDQYQEI---CEGLDCSVVTYGMSPEFDYSAQNITYDEKGRVAFDF 295

Query: 296 --EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              GK D   +  + G+  V NAL A      +G+    + + L        RFE+ GT 
Sbjct: 296 FRNGKLDTHIVLSVTGDHNVSNALSAIATAELLGLSMDTIQKGLLSFSGTDRRFEYKGT- 354

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I  DYAH    ++  LK  +     ++  VF                 AL  AD 
Sbjct: 355 IDDVTIVDDYAHHPTEIKATLKAAKHYPHRKLWCVFQPHTYTRTKAFFQEFAEALSHADH 414

Query: 413 AIVTDDNPRSEDP------EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            I+ D     E        E +   I       H  P F E            E  N  D
Sbjct: 415 VILADIYAARETDTLGVSSEALSDAIRSLGTDSHYFPSFAEIE------TFLKENWNAGD 468

Query: 461 VLVVAGKGH 469
           +++  G G 
Sbjct: 469 LVLTMGAGD 477


>gi|316933187|ref|YP_004108169.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
 gi|315600901|gb|ADU43436.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
          Length = 468

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 133/418 (31%), Gaps = 45/418 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +G     +     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVAALLD-AGDLDPTVINGGIINAYGTNARLGAGDWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T  A  +A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----- 300
           +  D    + ++ +  +          Q     L  +          ++   +       
Sbjct: 216 MCIDHPVVQTLVGKIEDRRIITYGENPQADA-RLLDLTPSGGGSTFKVAFRDRKAGTAHE 274

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D + P+PG     NA  A  +   +G+    + + L     V  RF   G    G  I
Sbjct: 275 IADLMLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTGEW-NGVTI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    +  +LK  R  T+G++I V                    + AD  IV D 
Sbjct: 334 IDDYGHHPVEIAAVLKAARQSTAGKVIAVVQPHRFTRLQSLFEEFCTCFNDADAVIVADV 393

Query: 419 NPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P  E P         +     HG    +   +          +    D +V  G G+
Sbjct: 394 YPAGEAPIAGIDRDHFVLGLRAHGHRDVVPLQDSASLAGVVAGLARSGDYVVCLGAGN 451


>gi|218458611|ref|ZP_03498702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli Kim 5]
          Length = 167

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/161 (50%), Positives = 104/161 (64%), Gaps = 1/161 (0%)

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           +  LEKL    GR E VG    G   YVDYAH  ++LE +L ++R  T+GR++VVFGCGG
Sbjct: 3   MAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDALENVLSSVRPFTTGRVVVVFGCGG 62

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           DRD+GKRPIMG+IA  LAD+ IVTDDNPRSE+P  IRAEI+   P   E  +R  AIR A
Sbjct: 63  DRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCAAEIADRAIAIREA 122

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + ML   D L+VAGKGHE    + +   +   D   +R+ L
Sbjct: 123 VAMLTSGDTLIVAGKGHEEGQTIGSVTLQ-FSDHAEVRKAL 162


>gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 829

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 155/447 (34%), Gaps = 32/447 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E+ +  V+ DSR +  G +FVA+ G   DGH F+ QA   GA  +V+            
Sbjct: 22  PEQPLRAVAIDSRRVLPGDLFVALGGRHCDGHDFVAQAEGAGASLVVLRRDRCPDSGPG- 80

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  L+V +    L   A+     H   ++AVTG++GK+ V + +  +       + 
Sbjct: 81  --PGCAHLLVADPLLALQRLAAWYRRTHIRRVVAVTGSNGKTVVKTALTALLAGRFRVAS 138

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  ++            P               GV    + A   G  +     ++  
Sbjct: 139 SPGSWNSQVGVPLAVLTAPPGT-----------ELGVFEAGISA--PGEMERLEAILQPD 185

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G   N+G  ++    ++      K+RLF+ +       +I  DD      +  A    C
Sbjct: 186 HGVLVNVGLANLGSFGSRAVTAREKLRLFQGM--DAHSWVIAPDDP-----LVNALPLPC 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R +  G       L    +  N   + + + G              V + L+A      +
Sbjct: 239 RRIHPG--AGPPRLLGQRSRGNGLLLQLDLGGCQAQVTVHTRSRPLVDDLLIALTAAHHL 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
           G+ +A + E L+     P R E   T      I    +    S++  L  +      GR 
Sbjct: 297 GVPAAEMAEVLQDYTFGPTRMETWRTPEGITIINDTASDDPLSVQTALATVAAFPEGGRR 356

Query: 385 IVVFGCGGDR---DQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFI 440
           + VFG  GD    +Q +  ++G++A +     ++   +P RS           H      
Sbjct: 357 LFVFGGMGDLGPCEQREHALIGRMAAEQGFSGLLLLPHPARSHTAAAWNG--CHPAQAAQ 414

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           E  +         +M    D +++ G 
Sbjct: 415 ELADTAALRERIRQMAEPGDTVLLKGA 441


>gi|254446835|ref|ZP_05060310.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
 gi|198256260|gb|EDY80569.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
          Length = 435

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 142/443 (32%), Gaps = 61/443 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +++DSR I++G +F A+     DGH F+  A   GA   +V       +         P
Sbjct: 2   GLTNDSRKIESGELFAALKTAARDGHDFLESARRSGAAGAIVDRFQEEIEL--------P 53

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            LVVD   + L   A         N++ +TG+ GK++    +  +              S
Sbjct: 54  QLVVDEVGEALLALAGGYRATWQANVVGITGSCGKTTCKEVLACLLS-------GFATLS 106

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQG--VTHVSVEA--SSHGLDQHRLDGIKLIAG 207
           T  +              +   +S L  +G       +EA  S  G  +     I    G
Sbjct: 107 TRGNLN----------NLIGVPMSMLRPEGASCEFAVLEAGISEPGEMERLAAAINPEWG 156

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAHNA 263
             T LG  H++   T +     K +LF+      +        Y  D  +  V+    + 
Sbjct: 157 IVTALGPAHLEDLGTVENVAREKGKLFQGSRLRRVFAGESCEPYLSDMAAPRVLLVKQDP 216

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V             +  +   +  +   + G    F +   G     N  +A     
Sbjct: 217 YLSV---------EWAFRFSSEAGRTCLEQRIGGSVQRFEYEGLGAGLASNVALALATAF 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
           ++G++   +   L        R E+     R       Y     S+   L    + T   
Sbjct: 268 SMGLEVDQLRSALGSWKPSQMRNEWKEIGGR-LVFLDCYNANPISMRDSLATFVSNTPEG 326

Query: 382 GRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
              + V GC    G +  +    +  +  L   D  +V      SE      A ++ G+ 
Sbjct: 327 EPRMYVIGCMEELGSEASRLHEELGREFPLRNQDFLLVIG----SE-----AASVLRGMK 377

Query: 438 GFIEKGNR---IEAIRTAIEMLN 457
               + +R   IE I  A E L 
Sbjct: 378 DSGHEMDRCFEIETIEEASERLK 400


>gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
 gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
          Length = 461

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 141/386 (36%), Gaps = 36/386 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++I +V  DSR    G +F A+ G K DG  ++     +GA A+VV  + + +   A  R
Sbjct: 31  KRIADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKGAAAVVVPKSRAAE---ALAR 87

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              P+L  ++    L   A     + P    + +TG+ GKS+    + +I    G ++  
Sbjct: 88  VRCPVLAAEDVLSSLHELAQNYVQRFPSVKTIGITGSCGKSTTKEALARITAVLGSTAKT 147

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G          ++    P  I+    L   S  GV    +     G     +  +K   
Sbjct: 148 PGNL--------NSEYGLPLSIF---GLDETSRYGV--FEMGIDHVGEMDRMVGMLKPSI 194

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  H++   +Q+     K R+F   L     +         + +  R+      
Sbjct: 195 ALLTNVGISHLEKMGSQEIIAEQKARIFHPGLEAGFVSSSCKHLDLIQTIAARSL----- 249

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              V Y  K I    +     +    ++ EG  F       G   + + + A  +   +G
Sbjct: 250 ---VRYDAKEISAVDLGLDGWQ----LTYEGHTFTVKSV--GRHLLEDVVGAIKVGRYLG 300

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRI 384
            ++  + E LE    + GR      +     I  D Y  + +S   IL  +  ++  G  
Sbjct: 301 ANAGDIAEALEGFEPMHGRS---FVHRSDVTIIDDSYNASLDSTNSILTYLSGLSWKGSK 357

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLA 410
            VV G   +  +  R     +A  +A
Sbjct: 358 KVVLGPMKELGKLSRQAHRMVARTVA 383


>gi|255524030|ref|ZP_05390992.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296186887|ref|ZP_06855288.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
 gi|255512317|gb|EET88595.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296048601|gb|EFG88034.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
          Length = 458

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 133/408 (32%), Gaps = 37/408 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           +S    L  ++A +  + P L+         +  +   G   +     +A+ GT GK++ 
Sbjct: 67  ISEDIDLVVYTAAVSKDNPELLKAKELNIPIMSRAEFLGHLMKGHKFNVAIAGTHGKTTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S V  I   + L    +            N  T  S  +L +A  Y  S          
Sbjct: 127 TSMVSHIFLNANLDPTIL--VGGQLDAINGNVRTGNSEYFLTEACEYKGSFLKFF----- 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                            G   N+  DH+D+++      NA ++ F +L+PK    I Y +
Sbjct: 180 --------------PYIGVILNIDADHLDFYKDIDDIQNAFIK-FAKLIPKNGYLICYGE 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF-DFLFPLP 307
           D     + K      C VL+ G     +  K +           +    +        +P
Sbjct: 225 DP---RMGKVISECNCNVLTYGLTNGNVVAKNMKFDEKGCASFDVYAANEMITSVKLNVP 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + NAL +  + +++ I + L+ + LE       RFE  G    G  +  DYAH   
Sbjct: 282 GKHNILNALASICVSLSLDIPTNLISKGLESFKGTHRRFEIKGVK-NGITVVDDYAHHPT 340

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
            ++  L   +     +I  VF                 A   AD  I+ D     E    
Sbjct: 341 EIKATLSAAKNYPHNKIFCVFQPHTYSRTLNLFKEFTEAFGDADELILADIYAAREKDTG 400

Query: 426 ----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 +  +I           +  E +    +     DV++  G G 
Sbjct: 401 VVSSSMLANKIKETKSACFNFHSFEEIVSYLNKNAKNGDVILTVGAGD 448


>gi|325136983|gb|EGC59580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M0579]
          Length = 463

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 12  MKPLDL------NFICQALKLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 65

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 66  ED------------VLAAGAAAVVVSREDCAALKDALKVDDTLAALQTLAKAWRDNVNPF 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +    +   +  T   ++            I L   L  
Sbjct: 114 VFGITGSGGKTTVKEMLAAVLRHRFGNEAVLATTGNFNNH-----------IGLPLTLLK 162

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 163 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIY 222

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 223 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGVDSGDVHAENIVLKPLSCEFDLV 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 280 CGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIK 338

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 339 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 398

Query: 414 I 414
           I
Sbjct: 399 I 399


>gi|225023733|ref|ZP_03712925.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC
           23834]
 gi|224943615|gb|EEG24824.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC
           23834]
          Length = 486

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 136/432 (31%), Gaps = 52/432 (12%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
             GH    + I  G + +V S+A    +          I V+      L+       G  
Sbjct: 74  FHGH--AAEHIE-GVDVVVTSTAIKPDNPEVLAAREAGIPVIPRA-MMLAEIMRFGQG-- 127

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ GT GK++  S    I   +G   +F IG   T +                  
Sbjct: 128 ----IAIAGTHGKTTTTSLTASILTAAGLDPTFVIGGKLTAAGTNAKLG----------- 172

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                   G  ++  EA            +  +    TN+  DH+D +       +    
Sbjct: 173 --------GGQYIVAEADESDAS---FLYLTPVITVVTNIDTDHMDTYDHSVDKLHQAFV 221

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
            F   +P    A +  D  + + ++           + G  +   I+   V +   +   
Sbjct: 222 EFVHRMPFYGKAFLCIDSEHVRAILPEIQKPFA---TYGLDETADIYADNVHSEGAQMCF 278

Query: 292 TISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           T+ +  +    F+     PG   V NAL A G+ +  G D   +   L     V  RF+ 
Sbjct: 279 TVHLNKRSIAPFEVRLNAPGRHNVLNALAAIGVALECGADVEAIQRGLAGFGGVGRRFQS 338

Query: 349 VGT----NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMG 403
            G           +  DY H    +   L   R      R+++ F               
Sbjct: 339 YGEIKLPQGGSALVIDDYGHHPVEMAATLSAARGAYPESRLVLAFQPHRYTRTRDLFEDF 398

Query: 404 KIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              L+ AD  ++TD     E+P          RA  + G    I   +  +   T + ML
Sbjct: 399 VRVLNTADAVVLTDVYAAGEEPIVAADSRALTRALRVAGKLEPIYCADVADMPATLLNML 458

Query: 457 NKQDVLVVAGKG 468
              D+L+  G G
Sbjct: 459 QDGDLLLNMGAG 470


>gi|325295150|ref|YP_004281664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065598|gb|ADY73605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 435

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 117/346 (33%), Gaps = 35/346 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+N +  DSR+++ G +FV + GN+ DGH FI  A   GA   +          +  I  
Sbjct: 19  KVNSIEFDSRNVKKGSLFVPLRGNR-DGHQFIKDAFQNGASGTLSER-------TLPIPE 70

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ++ V NT +   L      G      +A+TG+ GK++    +  +  +   +   + 
Sbjct: 71  GKFLIEVKNTFEAFKLLGKWKRGNFNGTTIAITGSVGKTTTKELLTHVFSKFFKTYRNVK 130

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + I                  + L               +  G     ++ +K     
Sbjct: 131 SFNNILGLTYTLSNLPLDTELYIQEL-------------GTNRQGEIPELVEIVKPEISV 177

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T + + H    +        K+ + E  +    P               +  +     +
Sbjct: 178 VTAVEKAHTAGFKDISDIVKEKLSITEGAILSIVPIQF------------KEFSKSKETI 225

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +G  I L  V    NK +  I   G+   F  P+PG   V + L+A GL     ++
Sbjct: 226 TFGREGD-IKLLDVQLFPNKTEFLIESFGRRLQFFSPIPGLGVVNSTLIAVGLAEVFKVN 284

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
              V E +        R   V   ++   I   Y     S+E  +K
Sbjct: 285 IEKVSELIRTFTPPEMRLT-VEQLNKVILIDDSYNANPKSMENAIK 329


>gi|224826079|ref|ZP_03699182.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
 gi|224601716|gb|EEG07896.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
          Length = 463

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/439 (19%), Positives = 146/439 (33%), Gaps = 57/439 (12%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G     GH     A  QGA+ +V S+A    +          I V+      L+     
Sbjct: 49  QGAVVHFGHD---AAYMQGADVVVTSTAVKADNPEVVEAKARHIPVIPRA-MMLAELMRF 104

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSP 167
             G      +A+ GT GK++  S    +   +G   +F IG   T +             
Sbjct: 105 KQG------IAIAGTHGKTTTTSLTASVLAAAGLDPTFVIGGKLTAAGTNAKLGS----- 153

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                        G   V+    S     H    +  +    TN+  DH+D ++      
Sbjct: 154 -------------GEFLVAEADESDASFLH----LAPVMAVVTNIDADHMDTYEHSFDKL 196

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIH 286
                 F   LP    A++  DDA  +E++ R       V + G+     +    V A+ 
Sbjct: 197 KQAFVDFLHRLPFYGRAVLCLDDANVREILPRVTKP---VTTYGFSDDADVQAANVRAVG 253

Query: 287 NKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +    +     +   F  +  LPG   V NAL A  + +  G D A + + L +   V 
Sbjct: 254 GQMHFDVVARNGNQLHFPVVLNLPGRHNVLNALSAIAIGLECGADVASIQQGLAEFAGVG 313

Query: 344 GRFEFVGT----NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGK 398
            RF+  G     +     +  DY H    +   L  +R    + R+++ F          
Sbjct: 314 RRFQRYGEVACPSGGHFTLVDDYGHHPVEMAATLAAVRGAFPAQRLVLAFQPHRYTRTRD 373

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIRTA- 452
                   L   D+ ++++     E P  I A     +   +    +     IEAI    
Sbjct: 374 LFEDFVKVLSTVDVLLLSEVYAAGETP--IVAADGRALARAVRVTGKVEPLFIEAIADLP 431

Query: 453 ---IEMLNKQDVLVVAGKG 468
              ++ +   DV++  G G
Sbjct: 432 QVILDTVQDGDVVITMGAG 450


>gi|114330272|ref|YP_746494.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
 gi|122314677|sp|Q0AJE2|MURC_NITEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114307286|gb|ABI58529.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
          Length = 473

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 147/432 (34%), Gaps = 54/432 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H    + I   A+A+V+S+A    +          I VV      L+       G     
Sbjct: 55  HTHAAENIQS-ADAVVISTAIQPDNPEVIAARERRIPVVPRA-MMLAELLRLHQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKAL 174
            +A+ GT GK++  S V  I   +G     +  G   T+ S A+  +             
Sbjct: 108 -IAIAGTHGKTTTTSLVASILAEAGQDPTFVIGGRLKTVDSHARLGK------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G   V     S     +    ++ +    TN+  DH+  ++            F
Sbjct: 154 ------GEFIVVEADESDASFLY----LQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--T 292
            E LP    A++ ADD +   ++            +  +   I    +     K      
Sbjct: 204 IEHLPFYGMAVLCADDPHVSAIIPMVSK-QVTTYGITSENAQIRATDIRHDQCKMHFCAH 262

Query: 293 ISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           I V G  +  D    LPG+  V NAL A  +   + I    +++ L     V  RF+  G
Sbjct: 263 IGVNGSARTLDITLNLPGKHNVLNALAAIAVGNELNIPDEAMVKALATFGGVDRRFQQYG 322

Query: 351 T----NSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
                + R   +  DY H    +   +   R    G R+++VF                 
Sbjct: 323 EIRLPDRRSFTLIDDYGHHPAEIAATMAAARNAFPGRRLVLVFQPHRYSRTRDLFEDFVR 382

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI--------RTAIEM-L 456
            L  AD  ++T+     E+P  I A     +   I    +IE I        ++A+   +
Sbjct: 383 VLSSADALLLTEIYSAGEEP--IIAADSKSLVRAIRVQGKIEPIYIEHINELKSAVHTVV 440

Query: 457 NKQDVLVVAGKG 468
            + DV+++ G G
Sbjct: 441 QEGDVVLIMGAG 452


>gi|258511796|ref|YP_003185230.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478522|gb|ACV58841.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 463

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/424 (20%), Positives = 150/424 (35%), Gaps = 46/424 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ +  GA+ +V S+A    +          I V+  +     L   R+      
Sbjct: 55  GHR--PEHVE-GADIVVHSTAVKQDNVELQAARALNIPVIHRSEMLARLMDDRVG----- 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AVTG  GK++  S +    +++GL    I     +     D      +         
Sbjct: 107 --IAVTGAHGKTTTTSMIAFAMEQNGLDPTFI-----VGGVVADLGDNAKAG-------- 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G   V+    S G   H     +      TN+  DH++++  +          F 
Sbjct: 152 ----KGPFVVAEADESDGSFLHY----RPAIAVVTNVEPDHLEHYDGKFENLVRAYETFI 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             +P E   ++ ADD   +E+   A    CRV++ G+ +   I  + V       +  + 
Sbjct: 204 RQIPSEGLLVMSADDDKLRELRSAAR---CRVVTYGFAEDADITARHVELGDRASRSDVL 260

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V GK        LPG+  V NAL A  +C+ +G+        L + H    RF+ V    
Sbjct: 261 VNGKFVGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVVAEVG 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I  DYAH    +   +   ++ T  RI+ VF                 A   AD  
Sbjct: 321 D-VLIVDDYAHHPTEIRATIAAAKS-TGRRIVAVFQPQRYTRTFFLFEEFAKAFGEADEV 378

Query: 414 IVTDDN-PRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+ D   P  E         ++ +EI     P         + I   ++ +   D+++  
Sbjct: 379 ILCDIYSPAGERKIDGVSAARLASEIARMSNPHTRYIPTHDDVIEYLVQSVRPGDLVLTM 438

Query: 466 GKGH 469
           G G 
Sbjct: 439 GAGD 442


>gi|83648521|ref|YP_436956.1| UDP-N-acetylmuramate--L-alanine ligase [Hahella chejuensis KCTC
           2396]
 gi|109892707|sp|Q2S9Z3|MURC_HAHCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83636564|gb|ABC32531.1| UDP-N-acetylmuramate--alanine ligase [Hahella chejuensis KCTC 2396]
          Length = 472

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 152/430 (35%), Gaps = 52/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q IA GA  +V SSA +  +   T  +   I V+    + L+      +G    
Sbjct: 65  GHT--AQNIA-GANVVVTSSAVAKDNPEVTAANEQRIPVIARA-EMLAELMRYRHG---- 116

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S +  +   +GL            +F    RL +        A  
Sbjct: 117 --VAIAGTHGKTTTTSLMASVLGEAGLDP----------TFVIGGRLNSAGTNAKLGASR 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           YL ++          S     H    +  +    TN+  DH+  +             F 
Sbjct: 165 YLVAEADE-------SDASFLH----LTPMVSVVTNIDADHMHTYGGDFEKLKQTFVDFL 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R   +   V++ G+ +   +    +     +   T  
Sbjct: 214 HNLPFYGVAVMCYDDPVVREIIPRVGRS---VITYGFNEKADVRAVDIAQQGMQTSFTAK 270

Query: 295 VEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             G   D      +PG+  V NAL    +    GI    ++  L K   V  RF+  G  
Sbjct: 271 RPGGHPDLRISLNMPGKHNVLNALAVIAVATDEGIADEAIVSALNKFQGVGRRFQVYGNY 330

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +     +  DY H    ++  +K IR      R++ VF                  L 
Sbjct: 331 PVDEGSVMLVDDYGHHPREVDATIKAIRDGWPEKRLVAVFQPHRYTRTRDLYEDFVQVLS 390

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
             D+ ++ D  P  E   P      +   I       P FIE+G  ++A+ + +  L   
Sbjct: 391 KVDVLVLMDVYPAGEKEIPGADGRSLCRSIRQRGQLDPIFIERGQDVKAVLSGV--LQDG 448

Query: 460 DVLVVAGKGH 469
           D+L+  G G 
Sbjct: 449 DLLLTQGAGD 458


>gi|322807873|emb|CBZ05448.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum H04402
           065]
          Length = 458

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 147/430 (34%), Gaps = 60/430 (13%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA   +     +++D     ++A I S+ P ++          +   FL         
Sbjct: 53  DKGAHIYIGHKKENIKDADLIVYTAAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKY 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A++GT GK++  S +  +  ++ +    I     +     + R+      ++ 
Sbjct: 113 N-----IAISGTHGKTTTTSMLSHVALKANVDP-TILVGGNLDIINGNVRVGKSD-FFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y SS                           G+  N+  DH+DY++      NA  
Sbjct: 166 EACEYKSSFLKFF-------------------PYIGAILNIDADHLDYYKDLDDIKNAFS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
           + F +L+PK+   + Y +D   + ++K A    C V++ G     I    +         
Sbjct: 207 K-FIKLIPKDGYLVAYGEDKNIQSIIKEA---SCNVITYGINSGDIQAHNIEYDEKACGN 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +    K F     +PG+  + N+L +  + +A  +    ++E +E       RFE  
Sbjct: 263 FDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    +  DYAH    +   L   +     ++  VF                   D 
Sbjct: 323 GCKNN-ITVIDDYAHHPTEISATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTKCFDN 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIR-TAIEMLNKQ 459
           AD  I+ D     E    I +  + G            F +  +    I+   IE     
Sbjct: 382 ADEIILADIYAAREKDTGIISSDMLGDKLRDRGLKCTNFHKFDD----IKNYLIENAKNG 437

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 438 DLILTVGAGD 447


>gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 436

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 151/452 (33%), Gaps = 69/452 (15%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L+ ++  +F  L+          + +KIN    DSR ++ G  F+ + G   DGH +I 
Sbjct: 5   QLKKIVNGEFLNLV----------KNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIE 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA         + ++           ++V +T + L         +    ++ +T
Sbjct: 55  DAIEKGAVGYFSEKPLNFKNG----------ILVKDTYQALVEVGKHKRNQV-RVVIGIT 103

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GTSGK+S    +  +      +    G  +              S  +            
Sbjct: 104 GTSGKTSTKELMNFVLSNLASTYATQGNYNNEIGVPLTLANIPESTDF------------ 151

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + A   G   +    +        ++G  H++   + +     K  +F       
Sbjct: 152 -AIIEMGAGKVGDIDYLGKIVNQDISVLVSVGHGHVEKFGSFENVIKGKGEIF------- 203

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                  + +     +K+ +N     ++ G  G  I +K +  + +     I  +    +
Sbjct: 204 ----NCGNYSVLPSELKKFYNPKNP-ITYGEDGD-IEIKDIKIVKDGTVGIIKYKNDKIE 257

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+       N    AG+   +G D    LE L+       R E +   +    I  D
Sbjct: 258 LKIPVYNIGVFKNIGAVAGVLYHLGYDPIKNLEVLKDFKSSSQRGEIIKIGN--FTIIDD 315

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVT 416
            Y     S++  ++ + ++  G  I V G   +  +  + +  ++         D  ++ 
Sbjct: 316 SYNANPLSVKNAIEILNSM-EGFKIFVLGDMLELGEYSQELHREVGKLLNASYIDYIMLY 374

Query: 417 -----------DDNPR---SEDPEKIRAEIIH 434
                      DD  R    ++ + I  +I+ 
Sbjct: 375 GNETKYVFEEIDDKSRVKHFDNKDDIAEDILK 406


>gi|20809114|ref|NP_624285.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517793|gb|AAM25889.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 879

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 148/373 (39%), Gaps = 30/373 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK++V   V  I +  G   + +G T+T   +  D  +          A +
Sbjct: 479 PIVSITGTNGKTTVTRMVAHILKTYG---YTVGMTTTDGIYIDDKCIYKGDNTGPKSART 535

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L+ + +    +E +  G+ +  L       G  TN+  DH+  D   T +     K  L
Sbjct: 536 CLADKNIDAAVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKA-L 594

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVC 283
             E +  +  +++ ADD  +  + K+A                       G  +++K+  
Sbjct: 595 VVEAVKDDGYSVLNADDPMTPYLAKKAKGKIIYFSMYDNNLTVKRHIENGGIAVYVKEGV 654

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
            +    Q+   V  ++            + N+L A      + +   ++ + ++  +   
Sbjct: 655 IVIANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTFYPDT 714

Query: 342 --VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
              PGRF      S   R+ VDY H    ++ +++  R + + R+I V G  GDR     
Sbjct: 715 THNPGRFNLFNIGS--FRVLVDYGHNVEGIKKVIEAARKLDANRLIGVIGVPGDRMDSSI 772

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKGNRI------EAIRT 451
             +G++     D   + +D + R     ++   +  G I G ++K N        EA++ 
Sbjct: 773 FKVGEVCGGGFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKETEALKA 832

Query: 452 AIEMLNKQDVLVV 464
           A+      D++VV
Sbjct: 833 AMHSAEAGDLIVV 845


>gi|34499797|ref|NP_904012.1| UDP-N-acetylmuramate--L-alanine ligase [Chromobacterium violaceum
           ATCC 12472]
 gi|44888169|sp|Q7NQ00|MURC_CHRVO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|34105647|gb|AAQ62001.1| UDP-N-acetylmuramate-alanine ligase [Chromobacterium violaceum ATCC
           12472]
          Length = 464

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 140/437 (32%), Gaps = 62/437 (14%)

Query: 54  EDGHL--FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
             GH   ++      GA+ +V S+A    +       +  I V+      L+       G
Sbjct: 54  FFGHDATYVE-----GADVVVTSTAVKADNPEVLAARDKRIPVIPRALM-LAELMRFKQG 107

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 +A+ GT GK++  S    +   +G   +F IG   T +       L        
Sbjct: 108 ------IAIAGTHGKTTTTSLTASVLGAAGLDPTFVIGGKLTAAGTNAKLGL-------- 153

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                     G   V+    S     H    +  +    TN+  DH+D +          
Sbjct: 154 ----------GEFLVAEADESDASFLH----LTPVMAVVTNIDADHMDTYDHSFDKLKQA 199

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQ 289
              F + +P    A++  DD   +E+ +R       V + G      I+ + V A   + 
Sbjct: 200 FVDFLQRMPFYGRAVLCVDDPNVREIRERVTKP---VTTYGLDDSADIYAENVRAAAGQM 256

Query: 290 QVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              + V+      F  +  LPG   V NAL A  + +  G     + + L +   V  RF
Sbjct: 257 HFDVVVKNGAITRFPLVLNLPGRHNVLNALSAIAIGLECGASIEAIQKGLSEFAGVGRRF 316

Query: 347 EFVGT----NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           +  G     +     +  DY H    +   L  +R      R+++ F             
Sbjct: 317 QRYGEVKAQDGGSFTLIDDYGHHPVEMAATLAAVRGAFPDRRLLLAFQPHRYTRTRDLFE 376

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG----FIEKGNRIEAIRT 451
                L   D  ++++     E P        +   +  G         +  +  +AI  
Sbjct: 377 DFVKVLSGVDALLLSEVYAAGEAPIVAADGRALARAVRVGGKVEPLFVEDIADMPQAILD 436

Query: 452 AIEMLNKQDVLVVAGKG 468
           A       DV+V  G G
Sbjct: 437 A---ARDGDVVVTMGAG 450


>gi|294787078|ref|ZP_06752332.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
 gi|294485911|gb|EFG33545.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
          Length = 546

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 113/536 (21%), Positives = 204/536 (38%), Gaps = 60/536 (11%)

Query: 3   LQDLIYKD-FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++LI  + + + +  L             + ++ DSR I +  + V   G +     ++
Sbjct: 24  LRELIAGEVWADSLESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFHS-SYL 80

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA A G    V    +S    +         ++V + R+ L+L ++  YG     +  V
Sbjct: 81  DQADALGLPCYVAQEDFSSATKALG-------IIVTDVRQALALLSAAFYGDPASQLKVV 133

Query: 121 TGTSGKSSV--ASFVQQICQR-SGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALS 175
             T  K     A F   I    SG  +  +         +   ++ LTTP  + L + + 
Sbjct: 134 GITGTKGKTTTAYFTHAILSAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMMR 193

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+ ++ +E SS      R+ G+++  G+F N+  DHI    H T + YF  K ++
Sbjct: 194 QAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQI 253

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIH----------L 279
                      ++ A  A++  V + A   G  + +     G  G   H          L
Sbjct: 254 AAN----SDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASL 309

Query: 280 KKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-- 332
             V A       T+       +G   DF   + G+F   NA  A  +  ++G+D      
Sbjct: 310 PTVTASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAI 369

Query: 333 LEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVV 387
            + LE +  V    R E   ++ +G    VDYAH   S   +L  +          II+V
Sbjct: 370 AQALEAMEKVTISGRMETF-SSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIILV 428

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443
            G  G++   +R  + + A D     I T+++  +E  E+I  ++   +     +     
Sbjct: 429 TGSAGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGIVL 488

Query: 444 NR----IEAIRTAIEMLNKQ--DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R     EA+R A     +    V++  GKG+E      N       D  ++  +L
Sbjct: 489 DRTHALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKVLSRLL 544


>gi|218290830|ref|ZP_03494899.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239188|gb|EED06389.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 463

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/424 (20%), Positives = 150/424 (35%), Gaps = 46/424 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ +  GA+ +V S+A    +          I V+  +     L   R+      
Sbjct: 55  GHR--PEHVE-GADIVVHSTAVKQDNVELQAARALNIPVIHRSEMLARLMDDRVG----- 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AVTG  GK++  S +    +++GL    I     +     D      +         
Sbjct: 107 --IAVTGAHGKTTTTSMIAFTMEQNGLDPTFI-----VGGVVADLGDNAKAG-------- 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G   V+    S G   H     +      TN+  DH++++  +          F 
Sbjct: 152 ----KGPFVVAEADESDGSFLHY----RPAIAVVTNVEPDHLEHYDGKFENLVRAYETFI 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             +P E   ++ ADD   +E+   A    CRV++ G+ +   I  + V       +  + 
Sbjct: 204 RQIPSEGLLVMSADDDKLRELRSAAR---CRVVTYGFAEDADITARHVELGDRASRSDVL 260

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V G+        LPG+  V NAL A  +C+ +G+        L + H    RF+ V    
Sbjct: 261 VNGEFVGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVVAEMG 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  I  DYAH    +   +   ++ T  RI+ VF                 A   AD  
Sbjct: 321 -GVLIVDDYAHHPTEIRATIAAAKS-TGRRIVAVFQPQRYTRTFFLFEEFAKAFGEADEV 378

Query: 414 IVTDDN-PRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+ D   P  E         ++ +EI     P         + I    + +   D+++  
Sbjct: 379 ILCDIYSPAGERKIDGVSAARLASEIARMSNPHTRYIPTHDDVIEYLAQNVRPGDLVLTM 438

Query: 466 GKGH 469
           G G 
Sbjct: 439 GAGD 442


>gi|308388618|gb|ADO30938.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130842|gb|EGC53575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis OX99.30304]
          Length = 452

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L + A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLTALQMVAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALINNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN-VKAGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|75675245|ref|YP_317666.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
 gi|109892715|sp|Q3STS7|MURC_NITWN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74420115|gb|ABA04314.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
          Length = 467

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 144/421 (34%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  NGADVLVVSTAIKRDNPELMAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +G     +     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVATLLD-AGDFDPTVINGGIINAYGTNARLGAGEWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T  A  +A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPTDVAIVTNVDAEHLDHFKTFDAVQDA-FRSFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD--- 301
           +  D    + ++ R  +   R+++ G      + L  +          +    +  D   
Sbjct: 216 MCIDHPVVQAMVGRIEDR--RIITYGQNPQADVRLVDLAPNGGGSHFKVMFRNRKTDAAH 273

Query: 302 ----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                + P+PG     NA  A  +   +GI  A + + L     V  RF   G    G  
Sbjct: 274 EISDLVLPMPGPHNALNATAAIAVAHELGITDATIRKALAAFGGVKRRFTRTGEW-NGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +  DY H    +  +LK  R  T GR+I V                    + AD  +V D
Sbjct: 333 VIDDYGHHPVEIAAVLKAARESTDGRVIAVVQPHRYTRLQALFEEFCTCFNDADTVVVAD 392

Query: 418 DNPRSEDPEKIRA-EIIHGIPGFIEKGNRI-------EAIRTAI-EMLNKQDVLVVAGKG 468
             P  E P  I   +  H + G    G+R         A+   I ++  + D +V  G G
Sbjct: 393 VYPAGETP--IVGIDRDHFVLGLRAHGHREVVPLPESAALAGIIADLAKQGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|11272240|pir||A81777 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) NMA2061 [imported]
           - Neisseria meningitidis (strain Z2491 serogroup A)
 gi|121052817|emb|CAM09164.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis Z2491]
 gi|308388625|gb|ADO30945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           alpha710]
 gi|319411048|emb|CBY91448.1| UDP-N-acetylmuramate-L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 506

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 153

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 154 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 195

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 196 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 252 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 309 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 369 TALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 429 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 486

Query: 465 AGKG 468
            G G
Sbjct: 487 MGAG 490


>gi|86749119|ref|YP_485615.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
 gi|109892730|sp|Q2IYK6|MURC_RHOP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86572147|gb|ABD06704.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
          Length = 468

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 139/419 (33%), Gaps = 47/419 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  AGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +G     +     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVAALLD-AGDFDPTVINGGIINAYGTNARLGAGDWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T  A  +A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF---- 300
           +  D    + ++ +  +   R+++ G        L ++    +     ++   +      
Sbjct: 216 MCIDHPVVQALVGKIEDR--RIITYGENPQADARLLELKPSGSGSTFKVAFRDRKAGTAH 273

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              + + P+PG     NA  A  +   +G+    + + L     V  RF   G +  G  
Sbjct: 274 EIAELMLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTG-DWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I  DY H    +  +LK  R  T GR+I V                    + AD  IV D
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQSTDGRVIAVVQPHRFTRLQSLFEEFCTCFNDADSVIVAD 392

Query: 418 DNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E P +       +     HG    I   +          +    D +V  G G+
Sbjct: 393 VYPAGEAPIQGIDRDHFVLGLRAHGHRNVIPLQDSASLAGVVAGVAKSGDYVVCLGAGN 451


>gi|237785339|ref|YP_002906044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758251|gb|ACR17501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 505

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 90/475 (18%), Positives = 154/475 (32%), Gaps = 67/475 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR I  G +F+A+ G + +GH F  QAI  GA   ++S    +         +   
Sbjct: 30  VEFDSRKIAPGSVFLALPGARVNGHDFAAQAIKDGATLALLSRDMGVPAVIIPHVEH--- 86

Query: 93  LVVDNTRKFLSLFASR-------------------LYGKHPENILAVTGTSGKSSVASFV 133
             V+     L                         L   H   ++ VTG++GK+S    +
Sbjct: 87  --VETNATALEYDRDGEGEAALAALSKLAHHTVTELVAHHGLRVIGVTGSAGKTSTKDMI 144

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I +  G +    G  +            T S  +L    + +S++G+ H         
Sbjct: 145 ATILRTQGETVAPPGSFNNEIGHPYTALRCTESTRFLV---AEMSARGIGH--------- 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDA 251
              H         G+  N+G  H+    +++A   AK  L E L        AI+ ADD 
Sbjct: 193 -IAHLARIAPPTIGAVLNVGTAHLGEFGSREAIAQAKGELVEALPSADDGGVAILNADD- 250

Query: 252 YSKEVMKRAHNAGCRVLSV----GYQGKFIHLKK--------VCAIHNKQQVTISVE-GK 298
             + V   A     RV++     G  G               V     +   T+++  G+
Sbjct: 251 --RLVSGMAPRTSARVITFSVKSGEAGDDPADDHDAVIATDVVLDSSARASFTLTMPTGE 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G+ QV NAL AA +  A+G+    +   L            V     G  I
Sbjct: 309 SAPVQLQVYGQHQVANALAAAAVGFAVGMSVDEIATALSHHTAASANRMDVRNRRDGVTI 368

Query: 359 YVD-YAHTSNSLEMILKN----IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             D Y    +S+   +      ++     +   V G  G+           I  +L    
Sbjct: 369 INDSYNANPDSMRAGIAALASTVQAREDAQSWAVLGQMGELGASATDEHYSIGEELGRHQ 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   ++         +  + HG            +   A+      +   DV+++
Sbjct: 429 I---NHVVVVGNGVNQRALAHGAKDSGVDVTHVDDVDAAVDNVWSSVRPDDVVLI 480


>gi|315226730|ref|ZP_07868518.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
 gi|315120862|gb|EFT83994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
          Length = 549

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 113/536 (21%), Positives = 204/536 (38%), Gaps = 60/536 (11%)

Query: 3   LQDLIYKD-FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++LI  + + + +  L             + ++ DSR I +  + V   G +     ++
Sbjct: 27  LRELIAGEVWADSLESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFHS-SYL 83

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA A G    V    +S    +         ++V + R+ L+L ++  YG     +  V
Sbjct: 84  DQADALGLPCYVAQEDFSSATKALG-------IIVTDVRQALALLSAAFYGDPASQLKVV 136

Query: 121 TGTSGKSSV--ASFVQQICQR-SGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALS 175
             T  K     A F   I    SG  +  +         +   ++ LTTP  + L + + 
Sbjct: 137 GITGTKGKTTTAYFTHAILSAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMMR 196

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G+ ++ +E SS      R+ G+++  G+F N+  DHI    H T + YF  K ++
Sbjct: 197 QAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQI 256

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIH----------L 279
                      ++ A  A++  V + A   G  + +     G  G   H          L
Sbjct: 257 AAN----SDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASL 312

Query: 280 KKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-- 332
             V A       T+       +G   DF   + G+F   NA  A  +  ++G+D      
Sbjct: 313 PTVTASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAI 372

Query: 333 LEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVV 387
            + LE +  V    R E   ++ +G    VDYAH   S   +L  +          II+V
Sbjct: 373 AQALEAMEKVTISGRMETF-SSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIILV 431

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443
            G  G++   +R  + + A D     I T+++  +E  E+I  ++   +     +     
Sbjct: 432 TGSAGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGIVL 491

Query: 444 NR----IEAIRTAIEMLNKQ--DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R     EA+R A     +    V++  GKG+E      N       D  ++  +L
Sbjct: 492 DRTHALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKVLSRLL 547


>gi|254805545|ref|YP_003083766.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
 gi|254669087|emb|CBA07638.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
          Length = 506

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 101 NGANVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 153

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 154 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 195

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 196 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 252 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 309 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 369 TALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 429 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 486

Query: 465 AGKG 468
            G G
Sbjct: 487 MGAG 490


>gi|170731879|ref|YP_001763826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815121|gb|ACA89704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
          Length = 468

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 143/403 (35%), Gaps = 29/403 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
              + VS+DSR +  G +FVA+ G + D H F+          +    A +     A   
Sbjct: 24  VTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPAG 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++    TR  L   A     + P  ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  IAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
                +++            + L   L  LS+     V     +H  +   L  +     
Sbjct: 136 ATAGNLNN-----------DVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAPTV 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T +A       +    LP +  A+  ADDAY+      A      
Sbjct: 185 ALVNNAQREHQEFMATVEAVALEHAAVI-HALPPDGVAVFPADDAYAGIWRVAATGNRIL 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++ +  +  +  +V    +  ++ I              GE    NAL A    +  G
Sbjct: 244 DFAL-HDAERQNDAQVVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAATAAALGAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           +  + + + LE    V GR +    +     G  +  D Y    +S+   +  +    + 
Sbjct: 303 VALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDVLAAHPAP 362

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
           R++V+   G   D+G    R I         D      D  R 
Sbjct: 363 RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFAFGDASRD 405


>gi|30248995|ref|NP_841065.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas europaea ATCC
           19718]
 gi|44888192|sp|Q82VS2|MURC_NITEU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30138612|emb|CAD84903.1| murC; UDP-N-acetylmuramate--alanine ligase protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 473

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 145/432 (33%), Gaps = 54/432 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H    + I   A+A+V+S+A    +          I VV        L   R        
Sbjct: 55  HTHAAENIQS-ADAVVISTAIHSDNPEVIAARERRIPVVPRAMMLAELLRLRRG------ 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKAL 174
            +A+ GT GK++  S V  I   +G     +  G   T+ S A+  +             
Sbjct: 108 -IAIAGTHGKTTTTSLVASILAEAGQDPTFVIGGKLKTVDSHARLGK------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G   V     S     +    ++ +    TN+  DH+  ++            F
Sbjct: 154 ------GEFIVVEADESDASFLY----LQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--T 292
            E LP    A++  DD + +E++            +  +   I    +     +      
Sbjct: 204 IEHLPFYGMAVLCVDDPHVREIISMITRP-VTTYGIASEDAQICATNIRHDRCRMHFLAH 262

Query: 293 ISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-- 348
           I V G  +  +    LPG+  V NAL A  +   +G+    +++ L     V  RF+   
Sbjct: 263 IGVNGSPRTLEVTLNLPGKHNVLNALAAIAVGNELGVPDEAIVKALATFGGVDRRFQQYG 322

Query: 349 -VGTNSRG-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKI 405
            +    +G   +  DY H    +   +   R    GR +V+ F                 
Sbjct: 323 EIPLPDQGSFALIDDYGHHPAEIAATMAAARNAFPGRRLVLAFQPHRYSRTRDLFEDFVR 382

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEML 456
            L  AD+ ++T+  P  E+P  I A     +   I    +IE I          T   + 
Sbjct: 383 VLSGADVLLLTEVYPAGEEP--IIAADSKSLARAIRVQGKIEPIYIEQIDELKATIHTIA 440

Query: 457 NKQDVLVVAGKG 468
              DV+++ G G
Sbjct: 441 QDGDVILIMGAG 452


>gi|84686338|ref|ZP_01014232.1| UDP-N-acetylmuramate--L-alanine ligase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665521|gb|EAQ11997.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2654]
          Length = 467

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 146/416 (35%), Gaps = 37/416 (8%)

Query: 67  GAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           GAE  +   A +L++      S+ I+   P L     R    +  + +  +     + +A
Sbjct: 57  GAEIFIGQRAENLENAEVVVISSAIKPGNPELDTARARGLPVVRRAEMLAELMRLKSNIA 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + V ++    G+    I     I ++  + R+     +           
Sbjct: 117 VAGTHGKTTTTTLVAELLVAGGIDPTVING-GIIHAYGSNARMGQGEWM----------- 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  VEA       +RL          TN+  +H+D+  T++A        F   +P
Sbjct: 165 ------VVEADESDGTFNRLPAT---IAIVTNIDPEHMDHWGTEEALHKG-FYDFVSNIP 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+   DDA  + ++ +  +          Q     +             +  +G+ 
Sbjct: 215 FYGLAVCCTDDADVQTLVGKITDRRVVTFGFNAQADVRAVNLTYDAGIAHFDIVLPDGRI 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG+  V NAL A  +   +G+  A + E L K   V  RF  VG       I 
Sbjct: 275 DGCTLPMPGDHNVSNALAAVAVSRHLGMKFAEIREALAKFGGVNRRFTRVGMW-NDVPII 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +LK  R    GR+I V                    + AD+  +++  
Sbjct: 334 DDYGHHPVEIAAVLKAARQAVKGRVIAVHQPHRYSRLHSLFDDFCTCFNEADVVGISEVY 393

Query: 420 PRSED--PEKIRAEIIHGIPGFIEKG----NRIEAIRTAI-EMLNKQDVLVVAGKG 468
              ED  P   R +++ G+     +     +  E +   +       D++V  G G
Sbjct: 394 AAGEDPIPGATRDDLVRGLTAHGHRHAYAVDTEEDLAALVRAEAEPGDIVVCLGAG 449


>gi|146342497|ref|YP_001207545.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. ORS278]
 gi|166222960|sp|A4YZK2|MURC_BRASO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146195303|emb|CAL79328.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Bradyrhizobium sp. ORS278]
          Length = 467

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 143/420 (34%), Gaps = 49/420 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  AGADVVVVSTAIKRDNPELMAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL    I     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVAALLDAGGLDPTVING-GIINAYGTNARLGGGEWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T +A  +A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPADVAIVTNVDPEHLDHFKTFEAVQDA-FRAFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----- 300
           +  D    + ++ +  +       V  Q   + L  +  +       +    +       
Sbjct: 216 MCIDHPVVQALVGKIEDRRIITYGVNPQAD-VRLVDLTPMGGGSSFKVVFRDRKSGATHE 274

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D + P+PG     NA  A  +   +G+    + + +     V  RF   G    G  +
Sbjct: 275 ISDIVLPMPGRHNASNATAAIAVARELGLSDEAIRKAIGGFGGVKRRFTRTG-EWNGVTV 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    +  +LK  R  ++G+++ V                    + AD  +V D 
Sbjct: 334 IDDYGHHPVEIAAVLKAARESSNGKVVAVVQPHRYTRLQSLFEEFCTCFNDADAVVVADV 393

Query: 419 NPRSEDP-EKIRAEIIHGIPGFIEKGNR------IEAIRTAI--EMLNKQDVLVVAGKGH 469
            P  E P E I  +  H + G    G+R        A    I  ++    D++V  G G+
Sbjct: 394 YPAGEAPIEGIDRD--HFVLGLRAHGHRDVLPLPKAADLAGIVKDLAKPGDLVVCLGAGN 451


>gi|159477677|ref|XP_001696935.1| hypothetical protein CHLREDRAFT_192674 [Chlamydomonas reinhardtii]
 gi|158274847|gb|EDP00627.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 513

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 167/468 (35%), Gaps = 98/468 (20%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSPI 168
            + V G  GK++ +  V+ I +  G +   +                +  +     PS  
Sbjct: 3   TVGVVGLLGKTTTSWLVRGILEELGQTVGLMSSIEHAIAEDRLDEDGYLWEPLEEDPSAD 62

Query: 169 ---------------------------YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                                         K L+ +  +G     VE  + GL     D 
Sbjct: 63  RESSVPFKLIPYEGKYEQHYGRRLPGLNAQKVLAGMRDRGAGVAVVELQADGLMLGTYDF 122

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------------RLFEELL--PKESPAIIY 247
           + L     T+L            A   A++             L    L  P+    ++ 
Sbjct: 123 MSLNVAVVTSLSP----RPGVPAAQQPAELVAAAADEVHAAIELLSARLVDPETQALVLN 178

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           ADD  ++++++R   A   V++ G   +G  +  + + +   + ++ +   G     +  
Sbjct: 179 ADDPAAEQLLERLGGA-VPVVTYGVVNKGADVVAESIKSNIWETELIVRTPGGRLQIITN 237

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   V N L A    +A+    A ++  +E +  +PGR E +    +   + VD A T
Sbjct: 238 LLGRHNVANVLAAVATGVALKAPLASIVAGIEAVE-IPGRSEVID-EGQEFSVVVDAART 295

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +L  +L  +R   + +I  VFGC G+ D   RP MG +A   +D  I+T++NPR EDP
Sbjct: 296 PEALGDMLDALRAGGARQIFTVFGCSGNEDASIRPRMGAVAHAKSDYVIITNENPRLEDP 355

Query: 426 EKIRAEIIHGIPGFIEK------------------------------------GNRIEAI 449
            K+ A+I+ G P  +                                       +R  AI
Sbjct: 356 AKVVADIVAGFPDDMVNRYSAYAYFPFQDQGRTPLWFEPYLQKAQRDNKRYVMEDRYSAI 415

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGE----KKMSVDCDIIREIL 493
           R AI     +DV+++AGKG E      + +         D    R  L
Sbjct: 416 RAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSVLTGWLDDRVEARNAL 463


>gi|304315705|ref|YP_003850850.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777207|gb|ADL67766.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 465

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 139/434 (32%), Gaps = 59/434 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V ++A   +D    IR+    +   +    L     +         + V G+ GK
Sbjct: 67  GANLVVYTAAVK-EDNPEMIRARELNIPTIDRATLLGEIMKKYKYG-----IGVAGSHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++  S +  + +        +  G    I    +  +             S+L       
Sbjct: 121 TTTTSLISVLLEEMNYDPTVLVGGEVDVIGGNVRVGKSDYFVTEACEYTDSFLKFY---- 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +    F  L+PK+   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FTQFANLVPKDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFD- 301
           +   DD+ +  V+K   N    +++ G         K      K      +   G     
Sbjct: 217 VACGDDSNTMSVLK---NVDRNIITFGIDSNCTWNAKNIKFDEKGFPSFDVYYNGVFIQN 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   + G+  +YNAL    +C  +G+D       ++K      RFEF GT   G  I  D
Sbjct: 274 FELSIVGKHNIYNALATLAVCHLLGVDIKSTPSIIKKFKGTHRRFEFKGT-LDGAIIIDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++  L +       RII +F                 + D ADI I+TD    
Sbjct: 333 YAHHPTEIKATLSSALNYPHNRIICIFQPHTYSRTYSLLQDFATSFDNADITIITDIYAA 392

Query: 422 SEDPEKI--RAEIIH----------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E    I    ++             I  F +  +          ++   D+++  G G 
Sbjct: 393 REKDTGIVHAKDLAKLIRDRGNETYYIKEFTDIVD------YLRSIIKSGDLVITIGAGD 446

Query: 470 --ETVHIVTNGEKK 481
             E  +++ N  KK
Sbjct: 447 VYEVGNMLLNFNKK 460


>gi|229196428|ref|ZP_04323175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228587065|gb|EEK45136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 300

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 122/329 (37%), Gaps = 45/329 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+I+   ++   +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVIDGEGLY-ESFHHLEIHGVCIDSKNMKEGNLFVPIIRVK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYG------TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++V   +  I        +  G  + QIG   TI    ++              
Sbjct: 117 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILE------- 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +  S  G  ++     +      T +G+ H+    +++    AK  +
Sbjct: 170 -------------MGMSEKGQIRNLSRIAQPDVAIITMIGQSHLKTLGSREEIAKAKFEI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + L   +   +   D+    + +      G    S G +     L       +   V  
Sbjct: 217 IDGL-HDDGLFLYNGDEPLLSQNINML---GIESKSFGRK-YTNDLFPTNVQLDGYGVHF 271

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            +      +  PL G+  + NA+V   + 
Sbjct: 272 KLNHTKIQYDVPLHGKHNILNAIVGIAVG 300


>gi|51894054|ref|YP_076745.1| UDP-N-acetylmuramate-alanine ligase [Symbiobacterium thermophilum
           IAM 14863]
 gi|59798212|sp|Q67K97|MURC_SYMTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51857743|dbj|BAD41901.1| UDP-N-acetylmuramate-alanine ligase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 482

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 132/418 (31%), Gaps = 48/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSG 125
           GA+ +V S+          +  + P L     R    L  S L  +      +AV GT G
Sbjct: 64  GADVVVYST---------QVPEDNPELAAARARGLRVLHRSELLAEFLNGRSIAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ +S V  + +++GL    +  G    I    +  R             S+L      
Sbjct: 115 KTTTSSMVACLLEKAGLDPTILLGGDLEVIGGTGKAGRGDWVVAEADESDRSFLRYH--- 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                                     TN+  +H+++ +   A      R F   +     
Sbjct: 172 --------------------PRVAVVTNVEPEHLEFWEGSFARIQEGFRQFLRQVQPGGL 211

Query: 244 AIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF- 300
           A + ADD   + + +   N      V+  G   +     +      K  V   V      
Sbjct: 212 AALCADDPTLRSIGQELRNQPGVVHVVFYGTHPEAEWRAENIRPWEKGIVYDCVRDGRLL 271

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P+PG     N+L A       G+    + E L        RFE V  +  G R+ 
Sbjct: 272 GEVRLPIPGRHNALNSLGALVAGDYAGLSFRQMQETLLSFGNARRRFE-VWADVDGIRVV 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAH    +   L   R     R++ VF                 A   AD+ ++T   
Sbjct: 331 DDYAHHPTEIRATLAAAREQAGRRVVAVFQPQRYSRTHWLMDEFATAFQDADVLVLTRIY 390

Query: 420 -PRSEDP------EKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P  E P      E +   I       +    ++ E +R  +  +   D ++  G G 
Sbjct: 391 SPPGERPIPGVSAEALARRIQANTGRPVAVISDQEEILRFLLAEVRPGDTVITMGAGD 448


>gi|84516388|ref|ZP_01003747.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
 gi|84509424|gb|EAQ05882.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
          Length = 471

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 148/419 (35%), Gaps = 53/419 (12%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GAE +V+SSA      +  A   +  P++   +    L            ++ +AV GT
Sbjct: 75  AGAEVVVISSAIKPGNPELDAARATGLPVVRRADMLAELMRL---------KSNVAVAGT 125

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  +    G+    I     I ++  + R+     +               
Sbjct: 126 HGKTTTTTMVAALLDEGGIDPTVING-GIIHAYGSNARMGQGEWM--------------- 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              VEA       +RL          TN+  +H+++  T +         F   +P    
Sbjct: 170 --VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGTIENLRKG-FYDFVSNIPFYGL 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           A+   D    + ++ R  +   RV++ G+     +    +          I+++ +D   
Sbjct: 224 AVCCTDHPEVQALVGRITDR--RVVTFGFNAQADVRAINLTYKAGVAHFDIALQSEDQVI 281

Query: 303 ---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG+  V NAL A  +   +G+    +   L     V  RF  V     G  I 
Sbjct: 282 AGCSLPMPGDHNVSNALAAVAVARHLGLKKDEIRAALAGFGGVNRRFTKVA-EVNGVTII 340

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +L+  R  T+GR+I V                    + AD+  +++  
Sbjct: 341 DDYGHHPVEIAAVLRAARQATTGRVIAVHQPHRFSRLSHHFDEFCACFNDADVVGISEVY 400

Query: 420 PRSEDP--EKIRAEIIHGIPGFIEKGNRIEAI--------RTAIEMLNKQDVLVVAGKG 468
              EDP      A+++ G+   I  G+R   I        R   E     D++V  G G
Sbjct: 401 AAGEDPIAGASHADLVAGL---IRHGHRHARIVNSEDDLERLVREQAKPGDMVVCLGAG 456


>gi|188997128|ref|YP_001931379.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|254766029|sp|B2VA52|MURC_SULSY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188932195|gb|ACD66825.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 454

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 88/409 (21%), Positives = 142/409 (34%), Gaps = 45/409 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +          I  +    + L+      YG      +A+ G+ GK+
Sbjct: 66  ADVVVYSSAVKPDNPEMIKAKQLGIPTIPRG-EMLAELMRFKYG------IAIAGSHGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +  ++G       PT  I            S   L +        G   V+ 
Sbjct: 119 TTTSMVGTVLGKTGFD-----PTVVIGG----KLEAYGSNAKLGR--------GEFLVTE 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S G        +     S  N+  +HI +++  +    A    F   +P    A + 
Sbjct: 162 SDESDGSFLK----LTPTIVSINNIDLEHIGFYKDLEDIKKA-FVAFANKVPFYGAAAVN 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD   K ++        +V+  G+ +   I    V   + + +  ++  G+       +
Sbjct: 217 IDDENVKSILPYIER---KVIKFGFSEDADIRAYDVRLENGRYKFKVNDFGE---IHLSV 270

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   VYNAL    +C  + +   ++ E LE       RFE   +N     +  DYAH  
Sbjct: 271 PGIHNVYNALATIAICNELSVPFCVIKESLENFKNAKRRFEIKYSND--IIVIDDYAHHP 328

Query: 367 NSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             L+  L   R      RII VF                 A D+ DI IVT+     E P
Sbjct: 329 TELKATLSAARDYFKDRRIIAVFQPHRYSRLNALFEEFAKAFDIPDITIVTEVYSAGESP 388

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 EK+  +I           N  EA      ++ K DV++  G G
Sbjct: 389 IENVSGEKLAEKIREYGNNVYYVSNLEEAENLLKNIIQKGDVILTLGAG 437


>gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
 gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
          Length = 824

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 152/388 (39%), Gaps = 26/388 (6%)

Query: 26  RERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            ++ I+ + +DSR +      +F A+   + DGH ++     +G    VVS   +L D  
Sbjct: 21  SDKNIDWLLTDSRSLAFPEATLFFALRSQRNDGHKYVADLYRRGVRDFVVS---ALPDDY 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A+        VV +  K L   A     +    ++ +TG++GK+ V  ++ Q+       
Sbjct: 78  ASRFPAATFYVVADPLKALQHLAECHRRRFDIPVVGITGSNGKTIVKEWLYQLLSPQ--- 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                   T S  + ++++  P  + L  A + L            S  G        I+
Sbjct: 135 -----LVVTRSPRSYNSQVGVPLSVCLLNAQTQLGIFEA-----GISQPGEMSALRPIIQ 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN G+ H +   + +     K+ LF++        I  ADD    E +++A  A
Sbjct: 185 PRIGVMTNTGQAHQENFTSLEEKCAEKLSLFKD----ADVLIYDADDPVVAEGVRQASFA 240

Query: 264 GCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G ++  S       + ++KV     +  +T +   ++ DF  P   E  V NA+    +C
Sbjct: 241 GDQLAWSRTKDEGPLVIRKVAHESERTHITYAYLQQESDFFIPFTDEASVQNAIHCLAVC 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + + +D+A++ + + +L  V  R E          I   Y    NSL++ L  ++     
Sbjct: 301 LYLHVDAAVIAQRMARLEPVAMRLEVKQGVRGCILINDSYNSDVNSLDIALDFMQRRPDR 360

Query: 383 ---RIIVVFGCGGDRDQGKRPIMGKIAL 407
              R  ++          +  +  ++A 
Sbjct: 361 VGMRKTLILSDISQSGMPREQLYAQVAE 388


>gi|78044616|ref|YP_360887.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|109892698|sp|Q3AAE7|MURC_CARHZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77996731|gb|ABB15630.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 464

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 141/387 (36%), Gaps = 43/387 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + +A     +VVS+A S QD    +++    + V +  + L+       G    
Sbjct: 66  GHR--EENLASDVSLVVVSTAVS-QDNPELLKAKRLGIPVMHRGELLARLMQEKKG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++ +S +  + ++ G       P   +     D      +         
Sbjct: 119 --IAVAGTHGKTTTSSMIAYVLEKEGFD-----PVIAVGGEIVDLGYNAKAG-------- 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               QG   V+    S G     L      A   TN+  DH+DY+Q+ +    A  + F 
Sbjct: 164 ----QGEYMVAEADESDGSFLKLL----PYAAVITNIEADHLDYYQSFEEIKKA-FKKFA 214

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + +  E   +   D+   +E++K       R  + G+  G    L+      N+    I 
Sbjct: 215 DNIRPEGFGVFCWDNLQVREMLK---GYKKRKFTYGFSPGSDFMLRDYREEQNQLVANIY 271

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +   + +    +PG+  + NA  A  +   IG+    + E L + +    RF+ +G   
Sbjct: 272 YKNTLEGELRLKVPGKHNILNAAAATAVLRNIGLSFKAISERLLEFNGAKRRFQILG-ER 330

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  I  DYAH    +E  L+  +      ++VVF                  L  A+  
Sbjct: 331 NGALIVDDYAHHPTEVEATLRAAKLYKDRDVLVVFQPHRYTRTHFFYKEFARVLVDAEKV 390

Query: 414 IVTDDNPRSEDP------EKIRAEIIH 434
           ++T      E P      E I  E+  
Sbjct: 391 VLTGIYSAGEKPIPGVSGEMIAEEMKK 417


>gi|326388919|ref|ZP_08210501.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206519|gb|EGD57354.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 474

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/414 (20%), Positives = 142/414 (34%), Gaps = 48/414 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
            S+A    +          I VV        L          +N +AV GT GK++  S 
Sbjct: 73  TSTAVRRDNPEVVAALEARIPVVRRAEMLAELMRL-------KNTVAVAGTHGKTTTTSM 125

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  +    G+    I     I+S+  + RL     +                  VEA   
Sbjct: 126 VACLLDAGGIDPTVING-GIINSYGSNARLGDSDWM-----------------VVEADES 167

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                RLDG        TN+  +H+D++ +      A +  F E +P    A++  D   
Sbjct: 168 DGSFLRLDGT---IAVVTNIDPEHLDHYGSFDRVKAAFVE-FIENVPFYGAAMLCIDHPV 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF------DFLFP 305
            + ++    +   RV++ G+  +  +  + V  +    + T  +  +D       D + P
Sbjct: 224 VQAIIPMVRDR--RVITYGFSAQSDVRGEAVIPVPGGNRFTAVLRQRDGTFHRIEDIVLP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDY 362
           +PG   V NAL A  +   +G+   ++ +   K   V  RF  VG    +     +  DY
Sbjct: 282 MPGRHNVQNALAAIAVAREMGVADDVIRDGFAKFGGVKRRFTKVGEIEVDGGLVTVIDDY 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +L   R    GR+I V                + A   AD+  VT      
Sbjct: 342 GHHPVEIRAVLAAAREGARGRVIAVVQPHRFTRLRDHMEEFQSAFHDADVVFVTPVYAAG 401

Query: 423 EDP--EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P      A ++ GI               E  R    M+   D++V  G G 
Sbjct: 402 EAPIEGVDAAVMVEGIKARGHRSAHSIAGVGELARELAPMVRADDMIVCLGAGD 455


>gi|168181017|ref|ZP_02615681.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
 gi|182668137|gb|EDT80116.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
          Length = 458

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 147/430 (34%), Gaps = 60/430 (13%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA   +     +++D     ++A I S+ P ++          +   FL         
Sbjct: 53  DKGAHIYIGHKKENIKDADLIVYTAAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKY 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A++GT GK++  S +  +  ++ +    I     +     + R+      ++ 
Sbjct: 113 N-----IAISGTHGKTTTTSMLSHVALKANVDP-TILVGGNLDIINGNVRVGKSD-FFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y SS                           G+  N+  DH+DY++      NA  
Sbjct: 166 EACEYKSSFLKFF-------------------PYIGAILNIDADHLDYYRDLNDIKNAFS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
           + F +L+PK+   + Y +D   + ++K A    C V++ G     I    +         
Sbjct: 207 K-FIKLIPKDGYLVAYGEDKNIQSIIKEA---NCNVITYGINSGDIQAHNIEYDEKACGN 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +    K F     +PG+  + N+L +  + +A  +    ++E +E       RFE  
Sbjct: 263 FDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLASNMKCKDIIEGIESFFGTHRRFELK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    +  DYAH    +   L   +     ++  VF                   D 
Sbjct: 323 GCKNN-ITVIDDYAHHPTEISATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTKCFDN 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIR-TAIEMLNKQ 459
           AD  I+ D     E    I +  + G            F +  +    I+   IE     
Sbjct: 382 ADEIILADIYAAREKDTGIISSDMLGDKLRDRGLKCTNFHKFDD----IKNYLIENAKDG 437

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 438 DLILTVGAGD 447


>gi|163794528|ref|ZP_02188499.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium BAL199]
 gi|159180252|gb|EDP64775.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium BAL199]
          Length = 475

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 144/430 (33%), Gaps = 52/430 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
           F+  A +    A  +VVS+A         I+ + P L    +R    +  + + G+    
Sbjct: 57  FVGHAASNVDDASILVVSTA---------IKGDNPELAAARSRMLPIVHRAEMLGELMRL 107

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S +  +   +GL    I      +                    
Sbjct: 108 KWSIAVAGTHGKTTTTSLISTVLDGAGLDPTIINGGIINAIGTN---------------- 151

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +  G     V  S           +       TN+  +H+D+H T +    A    F
Sbjct: 152 ---ARLGAGDWMVVESD--ESDGSFVKLPATIAVVTNIDPEHLDFHGTFENLQKA-FESF 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +P    A +  D    + ++ +  +          Q   +    V       + T  
Sbjct: 206 VQNIPFYGFAAMCLDHPTVQTLIPKVSDRRIVTYGFSPQAD-VRGVDVEITPAGSRFTAI 264

Query: 295 VEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +         + L P+ G+  V NAL A  +   +G+    V+  L+    V  RF 
Sbjct: 265 ITDRAHGTERRLENVLLPMYGQHNVQNALAAMAVASEMGLPDDRVVASLQGFGGVKRRFT 324

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIA 406
             G    G  +  DY H    +  +L   R+ +  GR+I V                   
Sbjct: 325 KTGEAG-GITVIDDYGHHPVEISAVLLAARSASGAGRVIAVVQPHRYTRLRDLFEDFCTC 383

Query: 407 LDLADIAIVTDDNPRSEDP-EKI-RAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQ 459
            + AD  IV D  P  E P   I R  ++ G+     +     G+ +E     ++     
Sbjct: 384 FNDADAVIVADVYPAGEAPIAGIDRDALVEGLRARGHRRVQPLGDPVELAARVLDFAKDG 443

Query: 460 DVLVVAGKGH 469
           D++V  G G+
Sbjct: 444 DMVVCLGAGN 453


>gi|297545530|ref|YP_003677832.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843305|gb|ADH61821.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 464

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 136/414 (32%), Gaps = 45/414 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V ++A    +          I  +D     L L   +         +AV+G+ GK
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTIDRA-TLLGLIMKKYKYG-----IAVSGSHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++  S +  I    G     +  G    I      N     S  ++ +A  Y  S    +
Sbjct: 121 TTTTSLISVIFNGMGYDPTVLVGGEVDVIGG----NVRVGNSEYFVTEACEYTDSFLKFY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFASLVPPDGYV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FD 301
           +   DDA +  V+   +     +++ G         K     +K      V  K+    +
Sbjct: 217 VACKDDANTMYVVNGLNKN---IVTYGIYKDSDWKAKNIGFDDKGCAIFDVYYKEEYMGN 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  D
Sbjct: 274 FKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++  L+  +     RII +F                 + D AD  I+ D    
Sbjct: 333 YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKALLNEFAESFDNADKIIIADIYAA 392

Query: 422 SEDPEKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E    I +       I       +   +    +    +     D+++  G G+
Sbjct: 393 REKDTGIVSSKDLVELISQKGKDVLYLKDFDSIMEYLNKNAKAGDLVLTIGAGN 446


>gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
 gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
          Length = 447

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 162/470 (34%), Gaps = 42/470 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+  LS       ++KI   + DS+ +Q G +F A+ GN  DGH F+  
Sbjct: 1   MRAMLLEDWVSLM--LSDVSCPKCDKKITGFAIDSQKVQPGDLFFALPGNATDGHQFLKH 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                  A   + A  +            ++ VD+T+  L    S         ++ +TG
Sbjct: 59  ------AATAGAVAAVVSHDYQGDSFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++   F + I              S   + A      +   + L+  ++    + V
Sbjct: 113 SVGKTTTKEFSKTILS------------SIYKTHASPKSYNSQLTVPLSLLMAE-GDEDV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQTQQAYFNAKMRLFEELLPKE 241
             + +  S  G  Q  L  ++      T++   H + + Q  Q     K  +    L K 
Sbjct: 160 MILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQGIQEILKEKSYI----LQKS 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              ++  D  Y  ++   +  A     S          K +        V I    +++ 
Sbjct: 216 KLQLLPKDSPYYLDLRSCSPTAEKFSFSFNDPLADFCYKAIS----GDSVVIQTPEENYC 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                  +    N L+A  L   + +    V+  L +L + P RFE   +   G ++  D
Sbjct: 272 LPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELKLPPMRFE--HSMRNGMQVIND 329

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++   L  +   + G  I++            +    ++ + A    D+    
Sbjct: 330 AYNACPEAMIAALDALPLPSDGGKIILILGHMAELGRYSEEGHALVAEKAASRGDMIFFI 389

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +    + +       +  F    +  + ++         DV+++ G
Sbjct: 390 GE--KWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV---ARYGDVILLKG 434


>gi|254441834|ref|ZP_05055327.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
 gi|198251912|gb|EDY76227.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
          Length = 465

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 149/412 (36%), Gaps = 43/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +V+SSA    +          + VV        L          ++ +AV GT GK+
Sbjct: 71  AEVVVISSAIKPGNPELDAARQRGLPVVRRAEMLAELMRM-------KSNIAVAGTHGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  + +  G  +  +     I ++  + R+ +   +                  V
Sbjct: 124 TTTTMVAALLEE-GKFNPTVVNGGIIHAYGSNARVGSGEWM-----------------VV 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA       +RL          TN+  +H+++  T +   +A    F   +P    A+  
Sbjct: 166 EADESDGTFNRLPAT---IAIVTNIDPEHMEHWGTIEN-LHAGFYDFVSNIPFYGLAVCC 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF---DFL 303
            DD+  + ++ +  +   RV++ G+     +    +          + ++ +D    D  
Sbjct: 222 TDDSDVQTLVGKITDR--RVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEDLTIKDCA 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+ +  +   L     V  RF  VG    G  I  DY 
Sbjct: 280 LPMPGDHNVSNALSAIAVARYLGMKAEEIRAALAAFKGVGRRFTRVGEVG-GVTIIDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +  +LK  R  + GRI+ V                    + AD+  +T+     E
Sbjct: 339 HHPTEISAVLKAARQASDGRILAVHQPHRYTRLHHHFADFCACFNDADVVAITEVFAAGE 398

Query: 424 D--PEKIRAEIIHGIPGFIEKGNRI---EA--IRTAIEMLNKQDVLVVAGKG 468
           D      R +++ G+     +  R    EA  +    E     D++V  G G
Sbjct: 399 DVIEGATRDDLVAGLIRAGHRDARAITNEADLVALVKEQAKPGDMVVCLGAG 450


>gi|121635450|ref|YP_975695.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
 gi|120867156|emb|CAM10923.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
          Length = 479

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 28  MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 81

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 82  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPF 129

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 130 VFGITGSVGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 178

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 179 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 238

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 239 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 295

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 296 CGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIK 354

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 355 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 414

Query: 414 I 414
           I
Sbjct: 415 I 415


>gi|329118766|ref|ZP_08247464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465113|gb|EGF11400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 459

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 156/417 (37%), Gaps = 32/417 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P   +   ++ + +DSR I+AG +F A+ G + DGH F 
Sbjct: 5   MKPLDL------NFICQALNLPAPAQNLAVSRIVTDSRDIRAGDVFFALDGERFDGHDFA 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +A GA A VVS         A        L V +T + L   A          +  +
Sbjct: 59  EDVLAAGAAAAVVSREDCAGLRGA--------LQVADTLEALQTLAQAWRENVNPFVFGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  + +R       +     +++            I L   L  L+ +
Sbjct: 111 TGSGGKTTVKEMLAAVLRRRFGEEAVLATAGNLNNH-----------IGLPLTLLKLNEK 159

Query: 181 G-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238
                + +  +  G         +  A    N  R H+            AK  +++ L 
Sbjct: 160 HRYAVIEMGMNHFGELAVLTRIARPDAALVNNALRAHVGCGFDGTADIARAKSEIYQGL- 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A+I  +DA + E+ + A  A  +  + G     +H + +          +    +
Sbjct: 219 GADGLALIPCEDANA-EIFQTASAAH-KQQTFGVDKGGVHARNIVLKPLSCAFDLVCGSE 276

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P+PG   V+NA+ AA L +A G+    V + L+    + GR + V    +G  +
Sbjct: 277 TASVSLPVPGRHNVHNAVAAAALALAAGLTLNEVSDGLKDFSNIKGRLK-VKRGIKGATL 335

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y    +S++  +  +  + + R+ V+   G   +     +  ++     D  I
Sbjct: 336 IDDTYNANPDSMKAAIDVLAALPAPRVFVMGDMGELGEDEAAAMHAEVGAYARDKGI 392


>gi|82703608|ref|YP_413174.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411673|gb|ABB75782.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
          Length = 522

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 92/452 (20%), Positives = 151/452 (33%), Gaps = 66/452 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+A+V S+A    +        + + VV        L   R         +A+ GT GK+
Sbjct: 94  ADAVVTSTAILPDNPEVLAARESKVPVVPRAIMLAELLRLR-------QGIAIAGTHGKT 146

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +   +G+      PT  I    +                     +G   V  
Sbjct: 147 TTTSLITSVLAEAGMD-----PTFVIGGRLEAAGSHAK------------LGRGEFIVVE 189

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S     H    ++ +    TN+  DH+D ++            F + LP    A++ 
Sbjct: 190 ADESDASFLH----LQPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFVQHLPFYGMAVLC 245

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT--ISVEGKD--FDF 302
            DDA+  E+M         V + G           +     +   T  I V GK      
Sbjct: 246 VDDAHVLEIMPAITKP---VTTYGLSETAQVRAADIRHSEGQMHFTALIGVNGKTRKLKI 302

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--------TNSR 354
           +  LPG   V NAL A  +C  +G+    ++  L     V  RF+  G        T   
Sbjct: 303 VLNLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQRYGEIPLTDPETGRN 362

Query: 355 G-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADI 412
           G   +  DY H    +   +   R    GR +V+ F                  L  AD+
Sbjct: 363 GSFTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDLFEDFVKVLSTADV 422

Query: 413 AIVTDDNPRSEDPEKIRAE----------IIHGIPGFIEKGNR-IEAIRTAIEMLNKQDV 461
            ++T+     E P  I A+          +    P F+E+ +   EAI     +   +DV
Sbjct: 423 LLLTEVYSAGEAP-IIAADSKSLARSLRVLGKVEPIFVERVDELEEAIH---SIARDKDV 478

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++V G G      V      +S D  +   +L
Sbjct: 479 VLVMGAGS-----VGGVAPTLSRDSQVEARLL 505


>gi|145296119|ref|YP_001138940.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           R]
 gi|166224333|sp|A4QFM2|MURC_CORGB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3868935|dbj|BAA34293.1| MurC [Corynebacterium glutamicum]
 gi|140846039|dbj|BAF55038.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 153/426 (35%), Gaps = 56/426 (13%)

Query: 70  AIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R      P++   +      L    L G      + + GT GK
Sbjct: 80  VVVTSFAAIPQDNPELVRAREEGIPVIRRSD------LLGELLEG---STQVLIAGTHGK 130

Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G+   F IG                     L KA +          
Sbjct: 131 TSTTSMSVVAMQAAGMDPSFAIG-------------------GQLNKAGTNAHHGTGEVF 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA        R    K      TN+  DH+D+ +T +AYF      F   +      +
Sbjct: 172 IAEADESDASLLRY---KPNVAVVTNVEPDHLDFFKTPEAYFQV-FDDFAGRITPNGKLV 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---------IHNKQQVTISVE 296
           +  +D ++ E+ +R+   G + +  G         +V A         +    + TI+++
Sbjct: 228 VCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINID 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----N 352
           G++   +  +PG+  V N   A      +G D   ++E L     V  RFEF G      
Sbjct: 288 GQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGK 347

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             G  IY DYAH    +  +L   RT       GR+IV F         +       AL 
Sbjct: 348 FNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGKGRVIVAFQPHLYSRTMEFQKEFAEALS 407

Query: 409 LADIAIVTDDNPRSEDP-EKIRAEII-HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
           LAD A+V +     E P + + +EII   +   +       A+     E+    D+++  
Sbjct: 408 LADAAVVLEIYGAREQPVDGVSSEIITDAMTIPVVYEPNFSAVPERIAEIAGPNDIVLTM 467

Query: 466 GKGHET 471
           G G  T
Sbjct: 468 GAGSVT 473


>gi|92116831|ref|YP_576560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
 gi|91799725|gb|ABE62100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
          Length = 478

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 161/451 (35%), Gaps = 41/451 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I  G ++ AI G+  DGH F+  A+  GA   V+ +A   +       ++
Sbjct: 27  ITGISIDSRTIVPGDVYFAIKGDVHDGHAFVDAALKAGAALAVIEAAQRDK-----FAAD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L+VD+    L   A     +    ++AVTG+ GK+S    ++ +    G +   +  
Sbjct: 82  APLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSVLGAQGKTHASV-- 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGS 208
                        +  +   +   L+         +     +H G     +  ++     
Sbjct: 140 ------------ASFNNHWGVPLTLARCPEDARFAIFEIGMNHAGEISPLVKMVRPHIAI 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRV 267
            T +   H+++    +A  +AK  +FE + PK    ++  D+A    + +RA      ++
Sbjct: 188 ITTVEPVHLEFFSGIEAIADAKAEIFEGVEPK-GAVVLNRDNAQFARLQRRAKKLGIAKI 246

Query: 268 LSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +S G  +     L  V        V   + G +  +   +PG     N+L         G
Sbjct: 247 VSFGADEKADARLLDVALHPACSAVHARILGHELTYKLAMPGRHMAMNSLAVLAAASLAG 306

Query: 327 IDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSG- 382
            D AL    L +     GR    V     G    +D  Y     S+   L  +     G 
Sbjct: 307 ADLALAGLALSQAQPAAGRGVRHVLMVPNGEATLIDESYNANPASMAAALTVLGQAGVGT 366

Query: 383 --RIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             R I V G   +         R +   I  +  D+        R      +   +  G 
Sbjct: 367 QSRRIAVLGDMLELGSSGADLHRGLTEAINANAIDMVFCCGPLMR-----NLWDALSSGK 421

Query: 437 PGFIEKGNRIEAIR-TAIEMLNKQDVLVVAG 466
            G   +G+   A+    +  +   DV++V G
Sbjct: 422 RGGYAEGSV--ALESQVVAAIRAGDVIMVKG 450


>gi|226951004|ref|YP_002806095.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
 gi|254765991|sp|C1FNF4|MURC_CLOBJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226844146|gb|ACO86812.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 458

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 147/430 (34%), Gaps = 60/430 (13%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA   +     +++D     ++A I S+ P ++          +   FL         
Sbjct: 53  DKGAHIYIGHKKENIKDADLIVYTAAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGYKY 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A++GT GK++  S +  +  ++ +    I     +     + R+      ++ 
Sbjct: 113 N-----IAISGTHGKTTTTSMLSHVALKANVDP-TILVGGNLDIINGNVRVGKSD-FFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y SS                           G+  N+  DH+DY++      NA  
Sbjct: 166 EACEYKSSFLKFF-------------------PYIGAILNIDADHLDYYRDLNDIKNAFS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
           + F +L+PK+   + Y +D   + ++K A    C V++ G     I    +         
Sbjct: 207 K-FIKLIPKDGYLVAYGEDKNIQSIIKEA---NCNVITYGINSGDIQAHNIEYDEKACGN 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +    K F     +PG+  + N+L +  + +A  +    ++E +E       RFE  
Sbjct: 263 FDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLASNMKCKDIIEGIESFFGTHRRFELK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    +  DYAH    +   L   +     ++  VF                   D 
Sbjct: 323 GCKNN-ITVIDDYAHHPTEISATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTKCFDN 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIR-TAIEMLNKQ 459
           AD  I+ D     E    I +  + G            F +  +    I+   IE     
Sbjct: 382 ADEIILADIYAAREKDTGIISSDMLGDKLRDRGLKCTNFHKFDD----IKNYLIENAKDG 437

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 438 DLILTVGAGD 447


>gi|325144955|gb|EGC67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M01-240013]
          Length = 479

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 28  MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 81

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 82  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPF 129

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 130 VFGITGSVGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 178

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 179 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 238

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 239 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 295

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 296 CGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFSNIKGRLN-VKSGIK 354

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 355 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 414

Query: 414 I 414
           I
Sbjct: 415 I 415


>gi|225023745|ref|ZP_03712937.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
 gi|224943627|gb|EEG24836.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
          Length = 464

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 145/401 (36%), Gaps = 28/401 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQA----G-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
            P       I  V +DSR   A    G  +FVA+VG+K D H F+P  +AQGA A+V   
Sbjct: 19  LPAPQHNLPIRRVITDSRQAAAADERGTDLFVALVGDKHDAHDFVPAVLAQGALALVSRQ 78

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  S         L V +T   L   A+         +L +TG+SGK++V   +  
Sbjct: 79  DCIALSGS---------LPVADTLAALQTLAAAWREAVNPMVLGITGSSGKTTVKEMLAA 129

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I +R      +    +T  +F                 L+    Q    + +  +  G  
Sbjct: 130 ILRRQ---FGEAAVLATAGNFNNHIG-------LPLTLLALRPQQRYAVIEMGMNHFGEL 179

Query: 196 QHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                     A    N  R HI            AK  ++  L P+   A+I A+D Y++
Sbjct: 180 DALTRIACPDAALVNNALRAHIGCGFDGVGDIARAKSEIYRGL-PESGTALIPAEDEYAE 238

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                      R +  G     +H + V  +    +  +  + +      P+PG+  V N
Sbjct: 239 VFRAACRALNLRQIEFGVDKGEVHAENVRLLPLGCRFDLVWQDQRAAVELPVPGKHNVAN 298

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373
           A+ AA L +  G+  +     L     + GR +      RG  I  D Y    +S++  L
Sbjct: 299 AVAAAALALQAGVGLSESATALAGFANIKGRLQR-KAGLRGSTIIDDTYNANPDSMKAAL 357

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  + + RI V+   G   D     +  +I     D  I
Sbjct: 358 DVLVELPAPRIFVMGDMGELGDDEAPALHAEIGRYARDKGI 398


>gi|227548915|ref|ZP_03978964.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079004|gb|EEI16967.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 483

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 96/429 (22%), Positives = 150/429 (34%), Gaps = 63/429 (14%)

Query: 70  AIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   +D    +R    + P++   +      L A  + G      L + GT GK
Sbjct: 72  VVVTSFAAIPKDNPELVRAAEESIPVIRRSD------LLAELMEG---STQLLLAGTHGK 122

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G   SF IG    ++                       + QG   V
Sbjct: 123 TSTTSMAVVALQAAGEDPSFVIGGQLNLAGTN--------------------AHQGAGEV 162

Query: 186 SV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            V EA        R    K      TN+  DH+DY  T + YF      F + +P     
Sbjct: 163 FVAEADESDASLLRY---KPDVAVITNIEPDHLDYFGTAEKYFEV-FDSFADRIPPGGHL 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-------IHNKQQVTISVEG 297
           ++  DDA +    +RA   G  V   G          + A            +V +++ G
Sbjct: 219 VVCLDDAEAAACGQRARARGVNVFGYGTAAAASRYPDIPAAAVITASDTTFAEVELTIGG 278

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNS 353
             +   +   +PG+  V NA  A   C  +G D   + E L     V  RFE  G  T  
Sbjct: 279 VQRTVRYTLSIPGQHMVLNAAGALVACTLVGADPGKLAEGLTGFTGVRRRFELKGQLTGG 338

Query: 354 R--GGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           R  G R+Y DYAH    +  +L   R         G+++  +                 A
Sbjct: 339 RFAGVRVYDDYAHHPTEVTAVLTAARETVRAAGQGGKVVACYQPHLYSRTIAFAEQFAAA 398

Query: 407 LDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ 459
           L LAD  ++ D     E+P +      I  ++        + + N  +A  T  E+    
Sbjct: 399 LSLADSVVLLDIFGAREEPVEGVDSRIIIDQMDPEASARTVYEPNFSQAPVTIAELAEPG 458

Query: 460 DVLVVAGKG 468
           D+++  G G
Sbjct: 459 DLVLTMGAG 467


>gi|323699056|ref|ZP_08110968.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. ND132]
 gi|323458988|gb|EGB14853.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           ND132]
          Length = 483

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 160/446 (35%), Gaps = 61/446 (13%)

Query: 51  GNKEDGHLFIPQA----IAQ-GAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTR- 99
           G    G      A    + + GA   +   A ++ D         I    P LV    R 
Sbjct: 46  GFNVTGSDLAASAAVRRLEKLGATVYIGHGADNVGDADVLIKSTAIPDRNPELVAARERG 105

Query: 100 -------KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                  + L+       G      +AV GT GK++  S +  I   +GL    I     
Sbjct: 106 IPIIPRAEMLAELMRLKTG------IAVAGTHGKTTTTSLLATIFTEAGLDPTVI-IGGR 158

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           ++++  + RL                     ++  EA        RL     I    TN+
Sbjct: 159 LNTYGANARLGEGD-----------------YLIAEADESDGSFLRLA---PIITVVTNI 198

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            +DH+D++  Q A   + MR F    P     ++  DD   + ++          L+ G 
Sbjct: 199 DKDHMDFYDNQDAIDLSFMR-FMNSTPFYGMNVVCGDDEGVQRLLPLIKRPY---LTYGL 254

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
             +     ++ + H +    + ++G+++ +     PG   V NAL   G+ + +G+D   
Sbjct: 255 GKQNKLRGEIVSSHLRSLFKVWLDGEEWGEVTVAQPGTHNVLNALACIGVALEVGLDKEE 314

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +++ L     V  RFE  G   +G  +  DY H    +   L+  +     R +VV    
Sbjct: 315 IIQGLGNFGGVGRRFERKGEK-KGVIVVDDYGHHPAEIMANLRTAKECYPDRRLVV-AFQ 372

Query: 392 GDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEK----- 442
             R    + + G+   A   ADI ++T+  P SE P    +   +  GI    E      
Sbjct: 373 PHRFSRTKALFGEFCKAFGDADILLLTEIYPASESPIPGVSGLSLAQGIKQVSETKVQFF 432

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +     +   ++L   D+ +  G G
Sbjct: 433 PDFESLEKRLKDLLQPGDLFMTQGAG 458


>gi|302036133|ref|YP_003796455.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
 gi|300604197|emb|CBK40529.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
          Length = 460

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 141/415 (33%), Gaps = 46/415 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA +  +          I V+    + L+      +G      +A+ G  GK+
Sbjct: 65  AQVVVISSAVAATNPEVVAAKARQIPVIPRA-EMLAELMRLKFG------VAIAGAHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +  + GL      PT  I            S   L +    ++    +  S 
Sbjct: 118 TTTSMVANVLAQGGLD-----PTMVIGG----KVNALGSHARLGRGDLLIAEADESDGSF 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +     + TN+ R+H+D++ + +   ++ +  F   +P    A++ 
Sbjct: 169 L------------RLAPTIAAVTNIDREHLDHYGSMEKLNDSFLE-FVNKVPFYGLAVLC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISVEGKDF-D 301
           +DD   + ++ R      R  + G               +       +  +   G++   
Sbjct: 216 SDDERLRNLLPRVVK---RYQTYGLHEHPGHVPDFRATDISLRQWGSEFRVFFRGRNLGP 272

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG   V N+LVA  + + + I   L+ + L     V  RF   G  + G  +  D
Sbjct: 273 FRLSIPGIHNVSNSLVAIAIGMELDIPVDLIRKGLAAFSGVERRFHLRGEKA-GIMVVDD 331

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H    +   +   +     R++V+F                 A D AD   +T+    
Sbjct: 332 YGHHPTEVRATIAAAKQGWDRRVVVLFQPHRYSRSRDLMQEFAHAFDQADALFMTEIYAA 391

Query: 422 SEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P       K+   +   G P       +       +  L   D+++  G G 
Sbjct: 392 GEQPIPGVSGAKLVEAVQAAGHPSATFVERKDTMAEQVLPTLKSGDLVITLGAGD 446


>gi|148381488|ref|YP_001256029.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930938|ref|YP_001385863.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934724|ref|YP_001389270.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. Hall]
 gi|166222973|sp|A7FPH5|MURC_CLOB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222974|sp|A5I7S3|MURC_CLOBH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148290972|emb|CAL85108.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152926982|gb|ABS32482.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930638|gb|ABS36137.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           Hall]
          Length = 458

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 146/430 (33%), Gaps = 60/430 (13%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYG 111
            +GA+  +     +++D     ++A I S+ P +           +   FL         
Sbjct: 53  DKGAKIYIGHKKENVKDADLIVYTAAIASDNPEITKAKEKNIKLMDRADFLGNLMKGYKY 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A++GT GK++  S +  +  ++ +    I     +     + R+      ++ 
Sbjct: 113 N-----IAISGTHGKTTTTSMLSHVALKANVDP-TILVGGNLDIINGNVRVGESD-FFIT 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y SS                           G   N+  DH+DY++      NA  
Sbjct: 166 EACEYKSSFLKFF-------------------PYIGVILNIDADHLDYYKDLDDIKNAFS 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
           + F +L+PK+   + Y +D   + ++K A    C V++ G     I    +         
Sbjct: 207 K-FIKLIPKDGYLVAYGEDKNIQSIIKEA---SCNVITYGINSGDIQAHNIEYDEKACGN 262

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +    K F     +PG+  + N+L +  + +A  +    ++E +E       RFE  
Sbjct: 263 FDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELK 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    +  DYAH    +   L   +     ++  VF                   D 
Sbjct: 323 GCKNN-ITVIDDYAHHPTEISATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTKCFDN 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIR-TAIEMLNKQ 459
           AD  I+ D     E    I +  + G            F +  +    I+   IE     
Sbjct: 382 ADEIILADIYAAREKDTGIISSDMLGDKLRDRGLKCTNFHKFDD----IKNYLIENTKDG 437

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 438 DLILTVGAGD 447


>gi|330892872|gb|EGH25533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 172

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/164 (39%), Positives = 90/164 (54%), Gaps = 4/164 (2%)

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + L KL    GR + +G       + VDYAHT ++LE +L+ +R    GR++ +FGCGGD
Sbjct: 3   KVLPKLEGPVGRMQRLGGCRTKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCGGD 62

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIR 450
           RD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I  G     +      R +AI 
Sbjct: 63  RDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDIRPGFAAADKVRFIEGRGQAIA 122

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             I   N  DV+V+AGKGHE    + +G++    D     + L 
Sbjct: 123 QLIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEAAKALA 165


>gi|302872762|ref|YP_003841398.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575621|gb|ADL43412.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 455

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 152/416 (36%), Gaps = 47/416 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G E ++ ++A S +D    + +    L +    +FL L          +N++A++GT G
Sbjct: 59  NGDETVIYTAAIS-KDNPELLAAKRMNLKIYERAEFLGLLMKDF-----KNVIAISGTHG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I +++  +     PT  + +F +       S  ++  +  YL  +   +V
Sbjct: 113 KTTTTSMIGYILKKANYN-----PTVLVGAFVKQL-----SGNFVIGSKEYLVVEACEYV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                G   N+  DH+DY +   +  N+  + F + +      +
Sbjct: 163 DS-----------FLKFNPTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKISTSGFLV 210

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              DD   K+++ + +     + +      F         + +  V    +         
Sbjct: 211 ANCDDKNVKDIISQLNTQIICISTKEKTDIFADNISCIDGYYEFDVKNKDDETLAHIKLN 270

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   VYNAL A  +   +G++S  +   + +      R E VG    G  +Y DYAH 
Sbjct: 271 IPGFHNVYNALAAFAVASKLGVESITIEHAISEFCGASRRLEKVG-EFDGIYLYDDYAHH 329

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR---- 421
              ++  L  ++ ++ G++  +F                 +L LAD  IVTD        
Sbjct: 330 PTEIKASLNTLKKLSQGKVFAIFQPHTFSRLKNLLNEFAESLSLADKVIVTDVYAAREKN 389

Query: 422 -----SEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                SE+      EI      I  F +  +        I+   K D++   G G 
Sbjct: 390 TFGITSENLYLKLKEIGVDCEYISSFEDIAS------YVIKEAKKGDIIATIGAGD 439


>gi|312621430|ref|YP_004023043.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201897|gb|ADQ45224.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 455

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 150/406 (36%), Gaps = 38/406 (9%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    + +    L +    +FL L          +N++A+ GT GK++  S
Sbjct: 64  VIYTAAISKDNPELLAAKRMNLKIYERAEFLGLLMRNF-----KNVIAIAGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +     PT  + +F +          ++  +  YL  +   +V      
Sbjct: 119 MIGYILKKANYN-----PTILVGAFVKQL-----GGNFVIGSKDYLVVEACEYVDS---- 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                      K   G   N+  DH+DY +   +   +  R F   +P     +   DD 
Sbjct: 165 -------FLKFKPTIGVILNIDNDHLDYFKDIDSIKES-FRKFAMKIPSSGFIVANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGE 309
             K+V+ + H     + +   +   I    +       +  +  +  +        +PG 
Sbjct: 217 NVKDVISKLHTQVVCIST--KEKADIFADNISYNDGYYEFDVKNKNNEILAHIKLNIPGF 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYNAL A  +   + I+S  + + L +      R E VG    G  +Y DYAH    +
Sbjct: 275 HNVYNALAAFAVASKLRIESFTIEQTLSEFCGASRRLEKVG-EFNGIYLYDDYAHHPTEI 333

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KI 428
           +  L  ++ I+ G+++ +F                 +L LAD  IVTD     E     I
Sbjct: 334 KATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLKLADKVIVTDVYAAREKNVFGI 393

Query: 429 RAE----IIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
            +E     +  I    E  +  E I    ++   K D++   G G 
Sbjct: 394 TSEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKGDIIATIGAGD 439


>gi|83949551|ref|ZP_00958284.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens
           ISM]
 gi|83837450|gb|EAP76746.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens
           ISM]
          Length = 470

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 150/415 (36%), Gaps = 45/415 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +V+SSA    +          + VV        L          ++ +AV GT GK
Sbjct: 70  GAEVVVISSAIKPGNPELDAARARGLPVVRRAEMLAELMRL-------KSNVAVAGTHGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V  +    G     +     I ++  + R+     +                  
Sbjct: 123 TTTTTMVAALLDH-GKFDPTVINGGIIHAYGSNARVGAGEWM-----------------V 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA       +RL          TN+  +H+++  T++         F   +P    A+ 
Sbjct: 165 VEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGTEENLHRGFYE-FVSNIPFYGLAVC 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK-----DF 300
             DDA  + ++ +  +   RV++ G+     +    +     +    I++ G+       
Sbjct: 221 CTDDADVQTLVGKVTDR--RVVTYGFNAQADVRGMNLRYEAGQAHFDIALRGEGDDKVIK 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D + P+PG+  V NAL A  +   +G+ SA + E L     V  RF  VG    G  I  
Sbjct: 279 DCVLPMPGDHNVSNALSAVAVARHLGMRSAEIREALANFGGVNRRFTRVG-EVDGVVIID 337

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +  +LK  R  T GR+I V                    + AD+  ++D   
Sbjct: 338 DYGHHPTEIAAVLKAARQATEGRVIAVHQPHRYSRLSHHFEEFCACFNEADVVGISDVYA 397

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468
             ED  P   R +++ G+     +  R      +  R   E     D++V  G G
Sbjct: 398 AGEDPIPGASRDDLVAGLIRHGHRHARALLDEGDLTRLVREQAGPGDMVVCLGAG 452


>gi|323487300|ref|ZP_08092600.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
 gi|323399345|gb|EGA91743.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
          Length = 459

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 166/451 (36%), Gaps = 63/451 (13%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           A+GA       A +++D      ++A I  + P  +    R    +  + L G+  +N  
Sbjct: 52  AKGAVVYYGQKAENIKDGIDAVVYTAAIHEDNPEFMEVKRRGIPMMSRAELLGQMMKNYR 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V +I   +  ++  I     ++S   + R+  P   ++ +A  
Sbjct: 112 EAIAIAGTHGKTTTTSMVTEIFMEA-DNNPTISVGGILNSIGGNIRVGGPE-FFVTEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S    + ++                       N+  DH+D+ +       +  R F 
Sbjct: 170 YTNSFLSFYPTM-------------------AVILNIEEDHLDFFKDIDDIRRS-FRQFI 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTI 293
           E +P+    I+       +E+   A     +V++ G   +  +     V   + +    +
Sbjct: 210 EKVPENGTIIMNGTIENWRELTAGAAG---KVVTFGNSKENDYSFDAVVYDEYARPSFDL 266

Query: 294 SVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++G K       + GE  VYNAL A  + +  G         L K      RFE  G  
Sbjct: 267 YIKGEKKERISLGVQGEHNVYNALGAIAVAMESGAGLEAAGRGLLKFTGTNRRFEKKG-E 325

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +G  I  DYAH    +E  LK        RI   F                 AL LAD 
Sbjct: 326 LKGITIIDDYAHHPQEIEATLKAAENYPHKRICCAFQPHTYTRTKAFMKEFAQALSLADC 385

Query: 413 AIVTDDNPRSEDP------EKIRAEI-IHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++TD  P  E          I A +   G+   ++   + +E  +  +E   + D+L+ 
Sbjct: 386 VMLTDIYPARETDTLGVSSADIVALLKEKGVDAWYLPTFDDME--KFILENCTQGDLLIT 443

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            G G     IV  GE           E+LGL
Sbjct: 444 MGAGD----IVKVGE-----------ELLGL 459


>gi|323705831|ref|ZP_08117403.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534827|gb|EGB24606.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 875

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 162/423 (38%), Gaps = 34/423 (8%)

Query: 65  AQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   +  +    +  + +  +         +  K +         K    I++VTGT
Sbjct: 434 ENGAIIEVNAAPGIRMHHYPSQGKPR-------DVAKAIIDMLYPKGSKATIPIISVTGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  I +  G   + +G TST   +  D  +          A + L+ + + 
Sbjct: 487 NGKTTTVRMISHILKIYG---YTVGMTSTDGIYVDDVCIYKGDNSGPKSARTCLADKNID 543

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241
              +E +  G+ +  L       G  TN+  DH+  D  +T +     K  L  E + K+
Sbjct: 544 AAVLETARGGIVREGLGYDLADIGIITNISEDHLGIDGIETLEDLAFVKS-LVVEAVKKD 602

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRV------LSVGYQ----GKFIHLKKVCAIHNKQQV 291
             +++ ADD  +  + KRA             L++       G  ++LK    +    ++
Sbjct: 603 GYSVLNADDPMTPYIAKRAKGKIIYFSMHENNLTIKRHLENGGISVYLKDDTIVIANGEI 662

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFV 349
              V+  +          + V NA+ +   C  I I   ++   +   +         F 
Sbjct: 663 IPIVKVDEIPATLNGKVLYNVENAMASISACYGIKIPVNVISRGIRSFYCDENHNPGRFN 722

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N    R+ VDY H  + ++ ++++ R +   R+I V G  GDR       +G+I  + 
Sbjct: 723 IFNIGSFRVLVDYGHNIDGIKKVIESARKLNPNRLIGVIGVPGDRSDSSTLKVGEICGEG 782

Query: 410 ADIAIVTDD-NPRSEDPEKIRAEIIHGI-PGFIEKGNRI------EAIRTAIEMLNKQDV 461
            D   + +D + R   P ++   +  G+  G + K +        +A++ A+      D+
Sbjct: 783 FDKVYIKEDLDLRGRKPGEVAKLLEIGVLKGGLSKEDVKVILKEVDALKAAMYEAMPGDL 842

Query: 462 LVV 464
           +V+
Sbjct: 843 IVI 845


>gi|254673384|emb|CBA08673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha275]
 gi|325208769|gb|ADZ04221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 452

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSVGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|254468675|ref|ZP_05082081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
 gi|207087485|gb|EDZ64768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
          Length = 451

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 162/440 (36%), Gaps = 41/440 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           ++V++DSR  +   IF+A+ G+K DG  FI   + Q     + +            + N 
Sbjct: 27  SDVNTDSRTFKDNEIFLALEGDKFDGSNFIDDVLKQKPLFFITNKEQ---------KYNA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
              VV++ +KFL   +  +  K     +A+TG++GK++    +    +        +   
Sbjct: 78  RYAVVESGKKFLIELSKLILKKLSLTKVAITGSNGKTTTKDLIVHFLKNKFNDDAVLFTK 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT---HVSVEASSHGLDQHRLDGIKLIAG 207
              ++              +   LS L SQGV       +  +  G   H  D I+    
Sbjct: 138 GNYNN-------------EIGLPLSILQSQGVEKFAVFEIGTNHPGEIIHLADIIRPNIS 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI    +++     K ++F   L      I+  DD Y + +    + +  + 
Sbjct: 185 IITNIGDAHIGNFGSKEKIAEEKKQIF-NFLKTNELKILNKDDEYFQIL----NQSPGKT 239

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +        +    +      + ++ + +     F L G+  + N  +A    I IGI
Sbjct: 240 FCISNNNDDSDVLSFKSCELNM-IELTHKFQSIKIKFQLTGQHNLQNFAIACAALINIGI 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D   + ++   L    GRF+          I   Y    +SL   + ++      +I+++
Sbjct: 299 DFQELEKYFGNLESTNGRFKKYIFKDNIELIDDSYNSNPSSLISAIDHLNQSEKNKILII 358

Query: 388 FGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
                 G   DQ    I+ +I     +I +      +      I+    + I  F    +
Sbjct: 359 GDMGELGQLTDQYHLQIIEEILKTKINIVLTMGKAFK----AAIKKNNENLILNFSTYED 414

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
            ++    A+  + K  +++V
Sbjct: 415 LLD---KALPAIKKDTIILV 431


>gi|268318240|ref|YP_003291959.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262335774|gb|ACY49571.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 479

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 142/413 (34%), Gaps = 43/413 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA   Q+   T+ +    + +    + L       +G      + V GT GK+
Sbjct: 76  ADVVVYSSAVRPQENPETLEALRRRIPLIPRAEMLGELMRMKFG------IGVAGTHGKT 129

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G     I     +++F  +                         + +
Sbjct: 130 TTTSMVGLVVSEGGFDPTII-VGGKVAAFESNAVAGEGD-----------------IIVI 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA  +     RL          T++  +H+D ++       A  R F   +P    AI+ 
Sbjct: 172 EADEYDRTFLRL---TPTLAVVTSIEPEHLDIYRDLDDLMAA-FRQFASSVPFFGAAILC 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DD   + ++ +      RV + G  +   I  + V       +  + ++G+        
Sbjct: 228 LDDPNVQALVGQLDR---RVRTYGLARQAEIRAENVQFEGFGSRFDVLLQGEPLGTIQLQ 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL A  + + + I    +   L +   V  RFE +G    G  +  DYAH 
Sbjct: 285 VPGLHNVRNALAAVAVGLELDIPFEAIQAGLARFTGVRRRFERLG-EVHGVLVIDDYAHH 343

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +   L+   T +   R++ VF                 +   AD+ +VTD     E 
Sbjct: 344 PTEIRATLEAAATAMPDRRLVAVFQPHLYSRTRDFQEDFARSFVDADVLVVTDVYGAREA 403

Query: 425 P-----EKIRAEIIH--GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
           P      +  AE+    G         R +     +E  L   D ++  G G 
Sbjct: 404 PIPGITGERIAELARRFGHRDVHYVPERRQIPGYLLEHVLRPGDAVLFMGAGD 456


>gi|29337227|sp|P94335|MURC_CORGL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 486

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 153/426 (35%), Gaps = 56/426 (13%)

Query: 70  AIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R      P++   +      L    L G      + + GT GK
Sbjct: 80  VVVTSFAAIPQDNPELVRAREEGIPVIRRSD------LLGELLEG---STQVLIAGTHGK 130

Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G+   F IG                     L KA +          
Sbjct: 131 TSTTSMSVVAMQAAGMDPSFAIG-------------------GQLNKAGTNAHHGTGEVF 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA        R    K      TN+  DH+D+ +T +AYF      F   +      +
Sbjct: 172 IAEADESDASLLRY---KPNVAVVTNVEPDHLDFFKTPEAYFQV-FDDFAGRITPNGKLV 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---------IHNKQQVTISVE 296
           +  +D ++ E+ +R+   G + +  G         +V A         +    + TI+++
Sbjct: 228 VCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINID 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----N 352
           G++   +  +PG+  V N   A      +G D   ++E L     V  RFEF G      
Sbjct: 288 GQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGK 347

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             G  IY DYAH    +  +L   RT       GR+IV F         +       AL 
Sbjct: 348 FNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGKGRVIVAFQPHLYSRTIEFQKEFAEALS 407

Query: 409 LADIAIVTDDNPRSEDP-EKIRAEII-HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
           LAD A+V +     E P + + +EII   +   +       A+     E+    D+++  
Sbjct: 408 LADAAVVLEIYGAREQPVDGVSSEIITDAMTIPVVYEPNFSAVPERIAEIAGPNDIVLTM 467

Query: 466 GKGHET 471
           G G  T
Sbjct: 468 GAGSVT 473


>gi|289579389|ref|YP_003478016.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
 gi|289529102|gb|ADD03454.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
          Length = 464

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 135/414 (32%), Gaps = 45/414 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V ++A    +          I  +D     L L   +         +AV+G+ GK
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTIDRA-TLLGLIMKKYKYG-----IAVSGSHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++  S +  I    G     +  G    I      N     S  ++ +A  Y  S    +
Sbjct: 121 TTTTSLISVIFDGMGYDPTVLVGGEVDVIGG----NVRVGNSEYFVTEACEYTDSFLKFY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFASLVPPDGYV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FD 301
           +   DDA +  V+         +++ G         K     +K      V  K+    +
Sbjct: 217 VACKDDANTMYVVN---GLNKNIVTYGIYEDSDWKAKNIRFDDKGCAIFDVYYKEEYMGN 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  D
Sbjct: 274 FKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKGI-VDGITIVDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++  L+  +     RII +F                 + D AD  I+ D    
Sbjct: 333 YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKALLNEFAESFDNADKIIIADIYAA 392

Query: 422 SEDPEKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E    I +       I       +   +    +    +     D+++  G G+
Sbjct: 393 REKDTGIVSSKDLVELISQKGKDVLYLKDFDSIMEYLNKNAKAGDLVLTIGAGN 446


>gi|45658139|ref|YP_002225.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45601381|gb|AAS70862.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 466

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 146/398 (36%), Gaps = 26/398 (6%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
             +   +FV ++GN+ DGH FI  AI++GA   +V   + +   +  +   +  + V NT
Sbjct: 39  EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYK-NLNLEEKSKAIPVKNT 96

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              L   AS    +    ++AVTG+SGK++    +    +    S+  +           
Sbjct: 97  LTALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVV----------- 145

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHI 217
                  + I L   L  +S Q    V     +H  +  RL  I K      T +G  HI
Sbjct: 146 -TEKNYNNEIGLPFTLFKISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHI 204

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           ++ ++Q+    AK  + E L  K           YSK +  +    G +++         
Sbjct: 205 EFLESQKNIAKAKGEIVEGL-KKGGKLFYPNTGEYSKILKNKTRKHGNKLV-------LT 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +K+ +I  K+     +E K+    + LPGE  + N  VA     AIG     + E + 
Sbjct: 257 KSEKIFSILQKKSSGFLLEYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIH 316

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQ 396
                  R +    N +   I   Y     S+   L+    +  G     V G   +  +
Sbjct: 317 SFKSSNKRLDLQ--NGKYSVINDTYNANYESMISSLEVADQLADGKEFYAVLGDMKELGE 374

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    K+    ++   +        D   I+ E + 
Sbjct: 375 YSKEFHKKLGKKCSEFQNLKGLYTFGTDAFWIQEEFVK 412


>gi|332981725|ref|YP_004463166.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
 gi|332699403|gb|AEE96344.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
          Length = 879

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 152/394 (38%), Gaps = 33/394 (8%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           N  K +         +    I++VTG++GK++    +  + +  GL+   +G T+T   +
Sbjct: 462 NAAKAIIDMLYPQGQRSSIPIVSVTGSNGKTTTVRIIAHMLRTQGLN---VGMTTTGGIY 518

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             D  +        A A   LS + V    +E +  G+ +  L       G  TN+  DH
Sbjct: 519 INDECIMKGDTTGPASAQIILSDKSVEAAVLETARGGIIRSGLGYDLSDVGVITNITGDH 578

Query: 217 I--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           +  D   T +   + K  + E  +     A++ ADDA S   ++ A    C ++   +  
Sbjct: 579 LGIDGIHTLEDMLHVKSLIVEA-VKDNGYAVLNADDAIS---VQAARRVRCNLIYFSFNQ 634

Query: 275 KFIHLKKVC-----AIHNKQQVTISVEGK---------DFDFLFPLPGEFQVYNALVAAG 320
             I ++        A++ K    +  +G+         +    +     + + N++ A  
Sbjct: 635 NNILIQHQIDNGRPAVYLKDDYIVLFDGENIYNVIAVDEIPATWEGKLTYNIENSMAAVA 694

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               I +  +++ + L   +    +    F   N R  R+ VDYAH   S + ++  ++ 
Sbjct: 695 AGYGIKVPVSVMEKALRTFYSDSLQNPGRFNIFNVRDFRVIVDYAHNVESYKSVISALKQ 754

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI- 436
           +   R+I V G  GDR       MG+IA    D  I+ +D   R     ++   +  G  
Sbjct: 755 MNPARLIGVIGAPGDRRDEDIIEMGRIAGYGFDRIIIKEDIELRGRQTGEVSRLLQQGAL 814

Query: 437 ------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                        +  +AI  A+      D+++V
Sbjct: 815 RAGMPKSSMNIILSETDAISAAMGQAQPGDIVIV 848


>gi|291278995|ref|YP_003495830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753697|dbj|BAI80074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
          Length = 453

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 136/382 (35%), Gaps = 34/382 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  + I + F  LI+ +S   +++     N V  +S+ ++ G IF+A+ G   DG+ F 
Sbjct: 1   MKTLN-IKEAFKNLIDYISPTIVEY-----NNVVINSKEVKKGDIFLALKGTNVDGNSFF 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  +GA   V  + Y     S         ++V+++   +  F       +    +A+
Sbjct: 55  KEAYERGAILTVFDNPYFYNKASINK------VLVEDSFNAIKSFGIWKLKNNFAKRVAI 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    + +I  +   S       +     A           Y           
Sbjct: 109 TGSVGKTTTKKLLYEIFSKQYQSYMSYKNYNNELGIAISCANIPDEVDY----------- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  +S G  +   D I+      T +   HI            K  + E    K
Sbjct: 158 --AFFEIGTNSKGEIKKYTDYIRPEVAVITKIASSHIGRFGDLNEIAAEKFSIAETDSVK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E    +  +D      +K       ++ +VG+ +     +  + ++    +  +      
Sbjct: 216 E--LWLNENDTVY---LKDEIVKNKKIFTVGFSEKADFRIIDIKSLDGGYEFYVKFNRDK 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F F         + NA +AAG+ +  GI+   + + +++      R   V  N     I 
Sbjct: 271 FKFQINHFYYHFILNASMAAGVALREGIEYDYIYQAIKEFLPEEKRG--VVYNYENIAII 328

Query: 360 VD-YAHTSNSLEMILKNIRTIT 380
            D Y  + +S+   LK++    
Sbjct: 329 DDTYNASIDSITAALKSLDKYK 350


>gi|256830370|ref|YP_003159098.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579546|gb|ACU90682.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
          Length = 458

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 147/419 (35%), Gaps = 56/419 (13%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTG 122
           QGA+ +V S+A S    +         PI+     R   L+       G      +AV G
Sbjct: 63  QGAQVVVRSTAVSEDNPELEEARAHGVPII----PRAEMLAELMRLKVG------VAVAG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S +  I   +      + PT  I                     + +  QG 
Sbjct: 113 THGKTTTTSLLATIFMEA-----HLDPTVIIGGRLNAYGS------------NAMLGQGR 155

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             ++    S G     L          TN+  DH+DY++      ++    F   +P   
Sbjct: 156 YLIAEADESDGSFLCLL----PRISIVTNVDADHLDYYKDLDEIRDS-FVDFMNSVPFYG 210

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301
             ++  DD   + ++ R       V++ G+  +     ++ +     +  +  + +   +
Sbjct: 211 LNVVCGDDKGVQSILSRVRRP---VMTYGFGEENDLRAEIISCEAGSRFNVYRQSEFWGE 267

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                PG   V NAL A G+ +  G+    ++  L     V  RFE  G    G  +  D
Sbjct: 268 VTLTHPGRHNVLNALAAIGVAMEAGVPKKDIIHGLGAFAGVGRRFEHKG-ERNGVLVVDD 326

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDN 419
           Y H    +   L+  R +      +V      R    + + G  +   A  D  ++T+  
Sbjct: 327 YGHHPTEIAATLETAR-LCYPHKRLVVAFQPHRFTRTQALFGDFSKVFAGVDQLLLTEIY 385

Query: 420 PRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P SE P          + IR      +  F + G+   A+    E+L + D+ +  G G
Sbjct: 386 PASESPIPGVSGQSLAQAIRQVTSTPVRFFEDFGSMQAALG---EILQEGDLFLTLGAG 441


>gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029]
 gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
 gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029]
 gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
          Length = 447

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 162/470 (34%), Gaps = 42/470 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+  LS       ++KI   + DS+ +Q G +F A+ GN  DGH F+  
Sbjct: 1   MRAMLLEDWVSLM--LSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKH 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                  A   + A  +            ++ VD+T+  L    S         ++ +TG
Sbjct: 59  ------AATAGAVAAVVSHDYQGDSFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++   F + I              S   + A      +   + L+  ++    + V
Sbjct: 113 SVGKTTTKEFSKTILS------------SIYKTHASPKSYNSQLTVPLSLLMAE-GDEDV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQTQQAYFNAKMRLFEELLPKE 241
             + +  S  G  Q  L  ++      T++   H + + Q  Q     K  +    L K 
Sbjct: 160 MILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQGIQEILKEKSYI----LQKS 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              ++  D  Y  ++   +  A     S          K +        V I    +++ 
Sbjct: 216 KLQLLPKDSPYYLDLRSCSPTAEKFSFSFNDPLADFCYKAIS----GDSVVIQTPEENYC 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                  +    N L+A  L   + +    V+  L +L + P RFE   +   G ++  D
Sbjct: 272 LPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELKLPPMRFE--HSMRNGMQVIND 329

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++   L  +   + G  I++            +    ++ + A    D+    
Sbjct: 330 AYNACPEAMIAALDALPLPSDGGKIILILGHMAELGRYSEEGHALVAEKAASRGDMIFFI 389

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +    + +       +  F    +  + ++         DV+++ G
Sbjct: 390 GE--KWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV---ARYGDVILLKG 434


>gi|269213849|ref|ZP_05982991.2| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
 gi|269145192|gb|EEZ71610.1| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
          Length = 469

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 139/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   + +   + + T+ V     E +
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIESAGAQMKFTVHVQMKGHEQE 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 PFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   DV++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 242

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 24/251 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 10  MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 68

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 69  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +      T S+F  D  +           L          +
Sbjct: 120 KTSVKEMTAAILSQCGNTLY------TASNFNNDIGVP-------ITLLRLNHDYDYAVI 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++  L P+   AI
Sbjct: 167 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAI 225

Query: 246 IYADDAYSKEV 256
           + AD+      
Sbjct: 226 MNADNNDWLNW 236


>gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 469

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 142/386 (36%), Gaps = 31/386 (8%)

Query: 27  ERKINEVS-SDSRHIQAGWIFVAIVGNKE-DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
              +N +   +S+ IQ G +F+A+      DGH F+  A+A+GA+A++VS          
Sbjct: 20  NVNVNGIVQFNSKDIQPGDLFIALQSENGGDGHQFVKDALARGADAVIVSKLIDNN---- 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +N  I++V+NT   LS  A+    +      + +TG+ GK+S    + ++      +
Sbjct: 76  ---TNDKIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKVFSTHYKT 132

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                  + +     +      +  Y    L                S G  Q  +  + 
Sbjct: 133 FASRKNFNNLLGMLLNLASVPINTEYAIFELC-------------TRSPGELQKLVKILP 179

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L     TN+   H ++  + +    AK  +F  L+ K   A+I +D  +  + ++  +  
Sbjct: 180 LNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNK-GIAVINSDSMFFTKQLEYINKL 238

Query: 264 GC-RVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           G   V + G        I      A + K  + I+  G D  F   + G  Q +N     
Sbjct: 239 GINNVFTFGTHQLSNSRILNYYYDADNQKSVININCNGYDLQFYTQILGYGQAFNIAAVM 298

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRIYVD-YAHTSNSLEMILKNI 376
            +     I+   V E +  L    GR +    N  S    I  D Y     S++  L  +
Sbjct: 299 LVSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALDLL 358

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIM 402
             I + R + + G   +     +   
Sbjct: 359 DQIKAKRKVAILGDMLELGNNTKEHH 384


>gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 436

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 150/443 (33%), Gaps = 64/443 (14%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
             +KIN    DSR ++ G  F+ + G   DGH +I  AI +GA         + ++    
Sbjct: 19  ENKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKGAVGYFSEKPLNFKNG--- 75

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  ++V +T + L         +    ++ +TGTSGK+S    +  +      +  
Sbjct: 76  -------ILVKDTYQALVEVGKHKRNQVKA-VIGITGTSGKTSTKELMNFVLSNLASTYA 127

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKL 204
             G                 + I +   L+ +     +T + + A   G   +    +  
Sbjct: 128 TQG--------------NYNNEIGVPLTLANIPENIDLTIIEMGAGKVGDIDYLGKMVNQ 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 ++G  H+    + +     K  +F              D +     +K+ +N  
Sbjct: 174 DISVLVSVGHGHVGKFGSFENVIKGKGEIF-----------NCGDYSVLPSELKKFYNPK 222

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              ++ G  G  I ++ +  + +     I  +    +   P+       N    AG+   
Sbjct: 223 NP-ITYGEDGD-IEIRDIKIVKDGTVGVIKYKNDKIELKIPVYNIGVFKNIGAVAGVLYH 280

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
            G D    LE L+      GR E +   +    I  D Y     S++  +  + ++  G 
Sbjct: 281 FGYDPIKNLEVLKDFKSSSGRGEIINIGN--FTIIDDSYNANPLSVKNAIDILNSM-EGF 337

Query: 384 IIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVT-----------DDNPR---SEDP 425
            I V G   +     + +  +I     +   D  ++            DD  R    ++ 
Sbjct: 338 KIFVLGDMLELGDYSQELHREIGKFLNVSYIDYIMLYGNETKYVFEEIDDKSRVKHFDNK 397

Query: 426 EKIRAEIIH---GIPGFIEKGNR 445
           + I  +I+      P  + KG+R
Sbjct: 398 DGIVEDILKFSNYQPVVLVKGSR 420


>gi|325128839|gb|EGC51698.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           N1568]
          Length = 469

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVITNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|237756370|ref|ZP_04584917.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691467|gb|EEP60528.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 456

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 87/423 (20%), Positives = 150/423 (35%), Gaps = 57/423 (13%)

Query: 67  GAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTR--------KFLSLFASRLYGKH 113
           GA+  +  S  +++D     +S+ ++ + P ++             + L+      YG  
Sbjct: 51  GAKIFIGHSEENVKDVDVVVYSSAVKPDNPEMIKAKQLGIPTIPRGEMLAELMRFKYG-- 108

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ G+ GK++  S V  +  ++G       PT  I            S   L + 
Sbjct: 109 ----IAIAGSHGKTTTTSMVGTVLGKTGFD-----PTVVIGG----KLEAYGSNAKLGR- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                  G   V+    S G        +     S  N+  +HI +++  +    A    
Sbjct: 155 -------GEFLVTESDESDGSFLK----LTPTIVSINNIDLEHIGFYKDLEDIKKA-FVT 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   +P    A +  DD   K ++        +V+  G+ +   I    +   + + +  
Sbjct: 203 FANKVPFYGAAAVNIDDENVKSILPYIER---KVIKFGFSEDADIRAYDLRLENGRYKFK 259

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++  G+       +PG   VYNAL    +C  + +   ++ E LE       RFE   +N
Sbjct: 260 VNDFGE---IHLSVPGIHNVYNALATIAICNELNVPFCVIKESLENFKNAKRRFEIKYSN 316

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                I  DYAH    L+  L   R      RII VF                 A D+ D
Sbjct: 317 D--IVIIDDYAHHPTELKATLSAARDYFKDRRIIAVFQPHRYSRLNVLFEEFAKAFDIPD 374

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I IVT+     E+P      EK+  +I           N  EA      ++   DV++  
Sbjct: 375 ITIVTEVYSAGENPIENVSGEKLAKKIKEYRKNVYYVSNLEEAENLLKNIIQIGDVILTL 434

Query: 466 GKG 468
           G G
Sbjct: 435 GAG 437


>gi|325144962|gb|EGC67245.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240013]
          Length = 506

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 153

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 154 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 195

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 196 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 252 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 309 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 369 TALLVDDYGHHPVEMAATLSAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 429 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 486

Query: 465 AGKG 468
            G G
Sbjct: 487 MGAG 490


>gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
 gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
          Length = 826

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 155/406 (38%), Gaps = 31/406 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       +E  I+ V +DSR +      +F A+   + DGH +IP+   +G 
Sbjct: 5   IEKVTTLIGARRYGDKEANISFVLTDSRSLCFPEETLFFALKSERNDGHNYIPELYGRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV +     +       ++  L V  + + L   A R   ++   I+ +TG++GK+ 
Sbjct: 65  RNFVVETVPEDWN---RRYPDSNFLKVVGSLEALQRLAERHRDEYLVPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  + L   L+  +  GV    + 
Sbjct: 122 VKEWLYQLLSPQ--------MVVTRSPRSYNSQIGVPLSVLL---LNENTQVGVFEAGI- 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY- 247
            S  G      D I+   G FT LG  H +   +  A    K+ LF      ++ AI+Y 
Sbjct: 170 -SQPGEMSALHDIIQPTIGVFTCLGSAHQENFPSLDAKCREKLHLF-----HDTQAIVYS 223

Query: 248 ADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFP 305
            DD      +      G +   S   +    ++K +     +  VT +   GK+  +  P
Sbjct: 224 LDDEVLNRCLDEYDYKGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
              +  V N++  A   + +G+  A + E +  L  V  R E V     G  +  D Y  
Sbjct: 284 FIDDASVVNSITCAVTALQLGVTPAALGERMALLEPVAMRLE-VKEGQHGCTLINDSYNS 342

Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             NSL++ L  +         R  ++           + +  K+A 
Sbjct: 343 DFNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAF 388


>gi|183221139|ref|YP_001839135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911230|ref|YP_001962785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775906|gb|ABZ94207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779561|gb|ABZ97859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase
           D-alanyl-D-alanine-adding enzyme;
           D-alanyl-D-alanine-adding enzyme) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 459

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 144/441 (32%), Gaps = 39/441 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+ S+ IQ   +FV + G + DGH +I  A+  GA   +    + +    +        
Sbjct: 33  ISTSSKEIQKNTLFVPLRGER-DGHEYIADALKAGATGFLCEKNHPILKNLSNEDQKKA- 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T   L   A+    +    ++A+TG+SGK+S    +  +    G  S  +     
Sbjct: 91  IFVKDTLIALGTLANFHRNRFCPIVIAITGSSGKTSTKDLLGGLFSFLGSKSLVV----- 145

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                ++       P  L +         V    +  +  G         +      TN+
Sbjct: 146 ---TEKNYNNEIGVPFTLFRITERTQ---VVICEMGMNHRGEINRLSKMAEPTHALITNI 199

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI+  ++++     K+ +   L P      +  D  +     +R   +    L +  
Sbjct: 200 GSAHIENLKSRENIAEEKIDIINGLRP-NGVLFVPDDLDFLGRAKQRTKKSNVN-LKIWK 257

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K   LK      N       +E +     + +PG   + N      +     I    +
Sbjct: 258 HSKNPELKVNIVQKNG----FLLEWRMEKIQWNIPGSKLLSNVRGMIAVGNFFQIPDVEM 313

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
            + +        R            I  D Y     S+   +         + I V+  G
Sbjct: 314 KKTIRTYKSPNKRLNI---KKGFYTIIDDSYNANPESMLSSIDASIQYAQNKPI-VWVLG 369

Query: 392 GDRDQG-----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
             ++ G         +GK         ++       +D   +  ++ +G   F  K + +
Sbjct: 370 TMKELGKFSKFYHEEIGKNLKKYPKGTLLG----FGDDTLPMVKQVSNG-KHFQSKVDLV 424

Query: 447 EAIRTAI-EMLNKQDVLVVAG 466
           E I+  I +      V++V G
Sbjct: 425 EFIKKEIPKQA----VILVKG 441


>gi|25028608|ref|NP_738662.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259507666|ref|ZP_05750566.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|29336721|sp|Q8FNU1|MURC_COREF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|23493894|dbj|BAC18862.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259164713|gb|EEW49267.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
          Length = 489

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 95/432 (21%), Positives = 146/432 (33%), Gaps = 68/432 (15%)

Query: 70  AIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R    N P++   +      L    L G      + + GT GK
Sbjct: 84  VVVTSFAAIPQDNPELVRAREENIPVIRRSD------LLGELLEGH---RQVLIAGTHGK 134

Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G+   F IG                     L KA +          
Sbjct: 135 TSTTSMAVVALQAAGMDPSFAIG-------------------GQLNKAGTNAHQGTGEAF 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA        R           TN+  DH+D+ +T +AYF      F + L      +
Sbjct: 176 VAEADESDASLLRY---TPEIAVVTNIEPDHLDFFKTPEAYFQV-FEDFADRLTPGGTLV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---------CAIHNKQQVTISVE 296
           +  DD  +  + +RA   G   +  G          V           +       + ++
Sbjct: 232 VCLDDPGAAALGERAVARGINAVGYGTVDAVAAHPTVPVKATILSSRVVAEGTYAVLDID 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--- 353
           G++ + +  +PG   V N   A      +G D   +   L     V  RFE+ GT     
Sbjct: 292 GREVEIILQIPGNHMVLNGAAALLSGYLLGADLDKLAAGLSDFSGVRRRFEYHGTVRGGQ 351

Query: 354 -RGGRIYVDYAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIALD 408
             G  +Y DYAH    +E +LK  R        GR+IV F         +       AL 
Sbjct: 352 FDGASVYDDYAHHPTEVEAVLKAARERVDAAGEGRVIVAFQPHLYSRTLEFAREFAGALS 411

Query: 409 LADIAIVTDDNPRSEDPEK------IRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           LAD A++ +     E P +      I  E+   +   P F    +RI       E+    
Sbjct: 412 LADAAVLLEIFGAREKPVEGVTSRVITDEMTIPVSYEPNFSAVPDRIA------EIAGPA 465

Query: 460 DVLVVAGKGHET 471
           D+++  G G  T
Sbjct: 466 DIVLTMGAGSVT 477


>gi|220918992|ref|YP_002494296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956846|gb|ACL67230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 468

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 139/373 (37%), Gaps = 28/373 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        +      +  VS+D+R +  G +FVA+ G + D H  +  A A GA A+V
Sbjct: 14  ELAGATRGRWLGAPPSAVAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAAAAGAAALV 73

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A++    +    +        +    L   A     +    ++ VTG++GK++    
Sbjct: 74  VSEAWAAAHPAPPRAALAVA----DPLAALGAIARHHRCRFGIPVIGVTGSNGKTTTREM 129

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I    G      G  +                + +   L  L     T V     +H
Sbjct: 130 IAAILATRGPVLKTEGNLNN--------------EVGVPLTLFGLEDAHATAVIEMGMNH 175

Query: 193 GLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +  RL  I +   G  T     H++   T  A  +AK  L+E L P    A++ ADDA
Sbjct: 176 PGEIARLAAIAQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGL-PAGGIAVVNADDA 234

Query: 252 YSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-L 306
               ++KR   +G R+L+     G +G  + L+ V       +  + V  ++     P L
Sbjct: 235 ---RMLKRGVASGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGL 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NA  AA   IA+G     + + L  +  V  R       S    +   Y    
Sbjct: 292 VGAHNARNAAAAACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANP 351

Query: 367 NSLEMILKNIRTI 379
            S+   L  +R +
Sbjct: 352 ASMSAALDVLRDL 364


>gi|19553357|ref|NP_601359.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390996|ref|YP_226398.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|21324927|dbj|BAB99550.1| UDP-N-acetylmuramate-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326335|emb|CAF20497.1| PROBABLE UDP-N-ACETYLMURAMATE--ALANINE LIGASE PROTEIN
           [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 153/426 (35%), Gaps = 56/426 (13%)

Query: 70  AIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R      P++   +      L    L G      + + GT GK
Sbjct: 80  VVVTSFAAIPQDNPELVRAREEGIPVIRRSD------LLGELLEG---STQVLIAGTHGK 130

Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G+   F IG                     L KA +          
Sbjct: 131 TSTTSMSVVAMQAAGMDPSFAIG-------------------GQLNKAGTNAHHGTGEVF 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA        R    K      TN+  DH+D+ +T +AYF      F   +      +
Sbjct: 172 IAEADESDASLLRY---KPNVAVVTNVEPDHLDFFKTPEAYFQV-FDDFAGRITPNGKLV 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---------IHNKQQVTISVE 296
           +  +D ++ E+ +R+   G + +  G         +V A         +    + TI+++
Sbjct: 228 VCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINID 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----N 352
           G++   +  +PG+  V N   A      +G D   ++E L     V  RFEF G      
Sbjct: 288 GQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGK 347

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             G  IY DYAH    +  +L   RT       GR+IV F         +       AL 
Sbjct: 348 FNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGKGRVIVAFQPHLYSRTIEFQKEFAGALS 407

Query: 409 LADIAIVTDDNPRSEDP-EKIRAEII-HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
           LAD A+V +     E P + + +EII   +   +       A+     E+    D+++  
Sbjct: 408 LADAAVVLEIYGAREQPVDGVSSEIITDAMTIPVVYEPNFSAVPERIAEIAGPNDIVLTM 467

Query: 466 GKGHET 471
           G G  T
Sbjct: 468 GAGSVT 473


>gi|126726615|ref|ZP_01742455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703944|gb|EBA03037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 474

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 135/395 (34%), Gaps = 42/395 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R I  G +FVA+  ++ DGH F+ QA+A GA A +V            +  + 
Sbjct: 25  EGVSIDTRTIAKGDLFVALK-DQRDGHEFVAQALAAGASAALVD------HIPDNVAPDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V N    L    +    +    ++AVTG+ GK+S    ++ +    G         
Sbjct: 78  PLLIVPNVLTALEALGTAARARTSAKVVAVTGSVGKTSTKEMLRVMLSTQGKCHA----- 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
                       +  +   +   L+ + +     V     +H  +   L  + +   G  
Sbjct: 133 ---------AEKSYNNHWGVPLTLARMPADADFAVIEIGMNHPGEIGPLAKLTQPDIGLI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+      Q     K  LF  L  +   AI+  D   S  +M  A      +L 
Sbjct: 184 TTVAAVHLAAFDNIQGIAVEKSALFSGLT-ENGVAIVNGDLETSDVLMNAAQGK--TILR 240

Query: 270 VGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G    F   L+ V    ++           F +    PG     NAL A     A+G D
Sbjct: 241 FGSDAGFEFVLENVTVTEDQTMCQAQTNDSAFLYKISSPGRHFALNALGALASVSALGAD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGG------RIYVD-YAHTSNSLEMILK------- 374
             L    L +     GR +        G       +  D Y     S+   ++       
Sbjct: 301 MGLAAVDLAQWVPFTGRGQKKIIQLDRGDASLTLTLIDDAYNANPTSVAAAIEILSVSNP 360

Query: 375 --NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             NI  I  GR I V G   +    +  +   +A 
Sbjct: 361 IDNIGRIRKGRRIAVLGDMLELGTEEHQLHAGLAE 395


>gi|114799693|ref|YP_761705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739867|gb|ABI77992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 73/457 (15%), Positives = 148/457 (32%), Gaps = 57/457 (12%)

Query: 29  KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++   +S D+R +Q G +FVA+  ++ DGH F+               A +     +   
Sbjct: 24  EVTGSISIDTRTLQKGDLFVALK-DQRDGHDFVEA----------AFKAGAAGALVSRPM 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ V++  + L+        +   +  AVTG++GK+SV   + QI +  G + + +
Sbjct: 73  PGGPVVQVEDVLEALTQMGIAARVRCGAHRTAVTGSAGKTSVKEMLAQIYRAHGPAHWNV 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIA 206
                          +  +   +   L+ +  +       +  ++ G    R   ++   
Sbjct: 133 --------------KSFNNHWGVPLTLARMPEETQRAVFEIGMNTPGEIAPRSQMVRPHT 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  T +   H+    + +     K  +F  L       I+ ADD +   + +RA +    
Sbjct: 179 GIVTCIAAAHLQGLGSVEGIAEEKANIFAGL-ESGGTIILPADDTFLDYLSERARSFCPT 237

Query: 267 --VLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             V + G        +          +V +S+ G+         G     N   A     
Sbjct: 238 GNVETFGASPDATARIVAYETDGRTSRVEVSIVGQRVAVTLNAVGAHWAQNVAAALLAAS 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTI 379
              +      E L      PGR   E +     G    +D  Y     S+   LK +   
Sbjct: 298 QASLSVKDCAEALSGYAPPPGRGTSETLVLPDIGEITLIDDAYNANPASMRAALKGLAQR 357

Query: 380 TSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
              R +         G       R +   +     D   +                +   
Sbjct: 358 AGTRRLAALGDMKEIGDSSAAEHRGLASSVVEAGVDGVFL---------VGAEMQHLSEA 408

Query: 436 IPGFIEKGNRIEA------IRTAIEMLNKQDVLVVAG 466
           +P  +++ +   A      ++ A+      DVL++ G
Sbjct: 409 LPRDLQQVSAPTADELWNQLQKAL---RAGDVLLIKG 442


>gi|331083260|ref|ZP_08332373.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404341|gb|EGG83886.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 459

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 137/425 (32%), Gaps = 48/425 (11%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
            +GA+  +   A ++ D      ++A I  + P       +    +  + L G+  +N  
Sbjct: 52  EKGAKIYIGQRASNITDDIDLVVYTAAIHEDNPEFACAKEKGIPMITRAELLGQIMKNYR 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +   +            I      N     S  ++ +A  
Sbjct: 112 LPIAVAGTHGKTTTTSMISHVLLEAEADPTI--SVGGILPAIHGNIRVGNSETFITEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S                               N+  DH+D+ +      ++  RLF 
Sbjct: 170 YTNSFLSFF-------------------PKISIILNIDADHLDFFKDLDDIRHS-FRLFA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS- 294
           E LP +   II  D    +E+  +     C V++ G +    +             +   
Sbjct: 210 EKLPADGTLIINGDIPNVEEITDKLP---CEVITYGLEKAADYTAANITFDETAHASFDC 266

Query: 295 -VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G+    F   +PG   V NAL A  L   +G D   V   +        RF++ G  
Sbjct: 267 LHKGQCIGRFSLAVPGLHNVSNALSAIALGEKVGFDLDTVRRGILHFGGTDRRFQYKGKV 326

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G  I  DYAH    +   LK            VF                  L  A+ 
Sbjct: 327 A-GVTIIDDYAHHPTEIAATLKTAANYPHKTTWCVFQPHTYTRTKALMDEFADVLATAER 385

Query: 413 AIVTDDNPRSEDP------EKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+ D     E          +  +I    G   +    + IEA    +E     DVL+ 
Sbjct: 386 VILADIYAARETDNLGVSSSDLCDKINERGGKAYYFPTFDEIEA--FLLENCINGDVLIT 443

Query: 465 AGKGH 469
            G G 
Sbjct: 444 MGAGD 448


>gi|323694259|ref|ZP_08108435.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
 gi|323501732|gb|EGB17618.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
          Length = 459

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 166/451 (36%), Gaps = 63/451 (13%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           A+GA       A +++D      ++A I  + P  +    R    +  + L G+  +N  
Sbjct: 52  AKGAVVYYGQKAENIKDGIDAVVYTAAIHEDNPEFMEVKRRGIPMMSRAELLGQMMKNYR 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V +I   +  ++  I     ++S   + R+  P   ++ +A  
Sbjct: 112 EAIAIAGTHGKTTTTSMVTEIFLEA-DNNPTISVGGILNSIGGNIRVGGPE-FFVTEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S    + ++                       N+  DH+D+ +       +  R F 
Sbjct: 170 YTNSFLSFYPTM-------------------AVILNIEEDHLDFFKNIDDIRRS-FRQFI 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTI 293
           E +P+    I+       +E+   A     +V++ G   +  +     V   + +    +
Sbjct: 210 EKVPENGTIIMNGTIENWRELTAGAAG---KVVTFGNSKENDYSFDAVVYDEYARPSFDL 266

Query: 294 SVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++G K       + GE  VYNAL A  + +  G         L K      RFE  G  
Sbjct: 267 YIKGEKKERISLGVQGEHNVYNALGAIAVAMESGAGLEAAGRGLLKFTGTNRRFEKKG-E 325

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +G  I  DYAH    +E  LK        RI   F                 AL LAD 
Sbjct: 326 LKGITIIDDYAHHPQEIEATLKAAENYPHKRICCAFQPHTYTRTKAFMKEFAQALSLADC 385

Query: 413 AIVTDDNPRSEDP------EKIRAEI-IHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++TD  P  E          I A +   G+   ++   + +E  +  +E   + D+L+ 
Sbjct: 386 VMLTDIYPARETDTLGVSSADIVALLKEKGVDAWYLPTFDDME--KFILENCTQGDLLIT 443

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            G G     IV  GE           E+LGL
Sbjct: 444 MGAGD----IVKVGE-----------ELLGL 459


>gi|149927133|ref|ZP_01915390.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
 gi|149824072|gb|EDM83293.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
          Length = 466

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 140/419 (33%), Gaps = 49/419 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+A+V S+A    +          + VV      L+       G      +AV GT G
Sbjct: 63  AGADAVVTSTAVGGSNPEVLAARAARVPVVPRAVM-LAELMRLKQG------IAVAGTHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  I         ++ PT  I                L  A +         +
Sbjct: 116 KTTTTSLVASILAE-----GKLDPTFVIGGR-------------LNSAGANAKLGTGEFM 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA     D   L+ +  +    TN+  DH++ +    A        F + LP    A 
Sbjct: 158 VVEADES--DASFLNLM-PVIAVITNIDADHMETYGHDFARLKQAFVEFTQRLPFYGVAA 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   +E+M         +++ G   +       V A   + + T+  E +   D  
Sbjct: 215 VCVDDPCVREIMPFVSKT---IVTYGLSEQAQIRAVNVQACQGQMKFTVLREDEAPLDIT 271

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIY 359
             LPG+  V N+L A  +   IG+    ++  LEK + V  RF+  G           + 
Sbjct: 272 LNLPGDHNVRNSLAAIAVATEIGVSDEAIVAALEKFNGVGRRFQHYGEVAAKEGGHFLVV 331

Query: 360 VDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    +   +          R+++ F                  L   D+ I+++ 
Sbjct: 332 DDYGHHPVEMAATLAAARGAYPDKRLVLAFQPHRYTRTRDCFEDFVKVLGTPDLVILSEV 391

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKG 468
               E P  I A     +   +    R E +          T + +    D+++  G G
Sbjct: 392 YSAGEAP--IVAADGRSLARAVRVAGRTEPVFVEDMNEMKSTILNIARDGDLVITMGAG 448


>gi|330443877|ref|YP_004376863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
 gi|328806987|gb|AEB41160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
          Length = 435

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 160/447 (35%), Gaps = 44/447 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ V+ DSR +Q G +F A+ G   DGH F+  A   GA A V+S  Y   ++     
Sbjct: 12  KKISGVAIDSRQVQPGDLFFALPGKTTDGHNFLQHAAQAGAVAAVISQEYKGDNY----- 66

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                + V++ RK L              I+ ++G+ GK++   F               
Sbjct: 67  -GLEFVRVEDPRKALQEAGLNKGRLFQGKIIGISGSLGKTTTKEFSNVFLS--------- 116

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              S    F       +   + L+  ++    +    + +  S      + L  ++    
Sbjct: 117 ---SVYRVFMSPKSYNSQLTVPLSILMAD-GDEDFLLLEMGVSEPKDMHNLLSIVQPEVA 172

Query: 208 SFTNLGRDH-IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             T++   H + + +  Q     K     ++L   S  ++  D  + K++ + + +A   
Sbjct: 173 VITHIATQHTMHFPRGIQEIVEEK----RQILQGSSLQLLPKDSPWYKDLCEVSPSAEKF 228

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S   Q      K + +      VTI    +D       P +    N L++  L   + 
Sbjct: 229 SFSFHDQAADFCYKSLDSH----GVTIQTPDEDIYLPIAFPYQPAYANLLISVSLAWLLE 284

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
                ++  L  L + P RFE   +   G  +  D Y     ++   L+ + + ++G  +
Sbjct: 285 TPLEHLISSLPDLKLPPMRFE--QSLRNGIHVINDAYNACPEAMLAALEALPSPSNGGKV 342

Query: 386 VVFGCGGDR----DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GF 439
           ++            +    ++   AL  A +          E    +   + H      F
Sbjct: 343 ILILGHMAELGVYSEEGHALVATKALSRAHVIFFI-----GEKWSPVLHMVQHHSCQVEF 397

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               + IE I    +++ + DV+++ G
Sbjct: 398 YSAPHDIEMILK--DLVQQGDVVLLKG 422


>gi|283782955|ref|YP_003373709.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Gardnerella vaginalis 409-05]
 gi|283441889|gb|ADB14355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Gardnerella vaginalis 409-05]
          Length = 599

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 179/553 (32%), Gaps = 91/553 (16%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
            FP    +      + D+R I++G +   I GN +    ++  A  +G  A V   +Y+ 
Sbjct: 61  YFPNIDADEYFTNATYDTRDIKSGTLLF-IKGNFK--SEYLLDADNKGLAAYVAEQSYAQ 117

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASFVQQIC 137
              +         L+V + +K +S+ A+  +G   E +  V  T  K     A F   I 
Sbjct: 118 YTKAVG-------LIVTDAKKAMSVLAAAFFGNPQEKLTIVGITGTKGKTTTAYFTHAIL 170

Query: 138 QRSGLSSFQIGP---TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                    +              ++ LTTP      K +       + ++ +E SS   
Sbjct: 171 NSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNDMKYLVMEVSSQAY 230

Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             +R+ G+K    +F N+  DHI    H T + Y   K ++           ++ +D  +
Sbjct: 231 KVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIAN----TKRLVLNSDTDH 286

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-----AIHNKQQVTISVEGKDFDFLFPLP 307
           +  +++ A      V +     K       C        +   +       D D+   L 
Sbjct: 287 ADLLLQDAERNNVLVTTFARIKKDEIEGDACENNNFDDLDDDCINYCAPANDDDYTELLT 346

Query: 308 GEF------QVYNALVA-----------------------------------------AG 320
            ++         +  +A                                         A 
Sbjct: 347 PDYIAMPVENSESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAA 406

Query: 321 LCIA--IGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           + IA  +GI+    L  L  +  V    R E            VDYAH   S + +L  +
Sbjct: 407 IAIAGELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIAVVDYAHNYISTKSVLDFV 466

Query: 377 RTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
                     I ++ G  GD+   +R  + + A +  +  I T ++  +ED   I  ++ 
Sbjct: 467 EERYGKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQ 526

Query: 434 HGIPGFIE----KGNRIEAIRTAIEMLNKQD-------VLVVAGKGHETVHIVTNGEKKM 482
             +           +R EAI  A       +       +L+  GKG E            
Sbjct: 527 SYVTNPNVSSRIIIDRAEAIECAYNDAASSEQKNGRLNILLAIGKGDERWIKNKRKHVPY 586

Query: 483 SVDCDIIREILGL 495
             D  +I+ + GL
Sbjct: 587 EGDSFVIKRLFGL 599


>gi|161870658|ref|YP_001599831.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
 gi|161596211|gb|ABX73871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
          Length = 463

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 144/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 12  MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFV 65

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 66  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKAWRENVNPF 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 114 VFGITGSGGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 162

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 163 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 222

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 223 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 279

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +
Sbjct: 280 CGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIK 338

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S+   +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 339 GATLIDDTYNANPDSMRAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 398

Query: 414 I 414
           I
Sbjct: 399 I 399


>gi|218768809|ref|YP_002343321.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           Z2491]
 gi|325203530|gb|ADY98983.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240355]
          Length = 468

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 63  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 116 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 157

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 158 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 214 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 271 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 330

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 331 TALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 390

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 391 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 448

Query: 465 AGKG 468
            G G
Sbjct: 449 MGAG 452


>gi|197124212|ref|YP_002136163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
 gi|196174061|gb|ACG75034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
          Length = 468

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 139/373 (37%), Gaps = 28/373 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        +      +  VS+D+R +  G +FVA+ G + D H  +  A A GA A+V
Sbjct: 14  ELAAATRGRWLGAPPSAVAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAAAAGAAALV 73

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A++    +    +        +    L   A     +    ++ VTG++GK++    
Sbjct: 74  VSEAWAAAHPAPPRPALAVA----DPLAALGAIARHHRCRFGIPVIGVTGSNGKTTTREM 129

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I    G      G  +                + +   L  L     T V     +H
Sbjct: 130 IAAILATRGPVLKTEGNLNN--------------EVGVPLTLFGLEDAHATAVIEMGMNH 175

Query: 193 GLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +  RL  I +   G  T     H++   T  A  +AK  L+E L P    A++ ADDA
Sbjct: 176 PGEIARLAAIAQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGL-PAGGIAVVNADDA 234

Query: 252 YSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-L 306
               ++KR   +G R+L+     G +G  + L+ V       +  + V  ++     P L
Sbjct: 235 ---RMLKRGVASGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGL 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NA  AA   IA+G     + + L  +  V  R       S    +   Y    
Sbjct: 292 VGAHNARNAAAAACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANP 351

Query: 367 NSLEMILKNIRTI 379
            S+   L  +R +
Sbjct: 352 ASMSAALDVLRDL 364


>gi|332300681|ref|YP_004442602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177744|gb|AEE13434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 458

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 132/384 (34%), Gaps = 29/384 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIRS 88
           + + +D+RH++   +FV++ G   DG+ F   A+ QG +  +V   S     D S     
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              I   D   + L   A     K     +A+TGT+GK++    V  +           G
Sbjct: 78  ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +             P   ++   L      G +H+   AS   L Q          G 
Sbjct: 138 NYNNEIGVPLTLLQVRPEHQFVIVEL------GASHIGDIASLCKLAQ-------PQYGI 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--- 265
            TN+GR H+    T +    AK  L+  L      A    +D      +           
Sbjct: 185 ITNVGRAHLSGFGTPEGVIKAKSELYAYLREHSGQAFCNGEDKTLISNLNGLPTVYYNGT 244

Query: 266 ---RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              RV           L K+     +        G+ +     L G++ + N L A  + 
Sbjct: 245 TSPRVTGAVLPTDESGLLKIEWCDQET-------GESYQLATKLVGDYNLNNILAAITVG 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           +  G+D   + E +        R + +   ++G R+ +D Y    +S+E+ L +  T+  
Sbjct: 298 LHFGLDPKTINEAVTNYQPRNERSQVLPPTAQGNRVILDCYNANPSSMEVALSSYFTMDC 357

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI 405
             +  +   G   + G       I
Sbjct: 358 QGLNRMLILGDMNELGDAAESEHI 381


>gi|25008815|sp|Q9JSZ8|MURC_NEIMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325130849|gb|EGC53582.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           OX99.30304]
          Length = 469

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|24214164|ref|NP_711645.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24195061|gb|AAN48663.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 466

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 145/398 (36%), Gaps = 26/398 (6%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
             +   +FV ++GN+ DGH FI  AI++GA   +V   + +   +  +   +  + V NT
Sbjct: 39  EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYK-NLNLEEKSKAIPVKNT 96

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              L   AS    +    ++AVTG+SGK++    +    +    S+  +           
Sbjct: 97  LTALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVV----------- 145

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHI 217
                  + I L   L  +S Q    V     +H  +  RL  I K      T +G  HI
Sbjct: 146 -TEKNYNNEIGLPFTLFKISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHI 204

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           ++ ++Q+    AK  + E L  K           YSK +  +    G +++         
Sbjct: 205 EFLESQKNIAKAKGEIVEGL-KKGGKLFYPNTGEYSKILKNKTRKHGNKLV-------LT 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              K+ +I  K+     +E K+    + LPGE  + N  VA     AIG     + E + 
Sbjct: 257 KSDKIFSILQKKSSGFLLEYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIH 316

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQ 396
                  R +    N +   I   Y     S+   L+    +  G     V G   +  +
Sbjct: 317 SFKSSNKRLDLQ--NGKYSVINDTYNANYESMISSLEVADQLADGKEFYAVLGDMKELGE 374

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +    K+    ++   +        D   I+ E + 
Sbjct: 375 YSKEFHKKLGKKCSEFQNLKGLYTFGTDSFWIQEEFVK 412


>gi|284799407|ref|ZP_06390126.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
 gi|284797770|gb|EFC53117.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
          Length = 469

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 140/423 (33%), Gaps = 53/423 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    I   +GL    +     +++   + RL           ++       + +
Sbjct: 117 KTTTTSLTASILGAAGLDPTFV-IGGKLNAAGTNARLGKGE-----YIVAEADESDASFL 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  I    TN+  DH+D +       +     F   +P    A 
Sbjct: 171 Y---------------LTPIMSVVTNIDEDHMDTYGHSVDKLHQAFVDFIHRMPFYGKAF 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGKD 299
           +  D  + + ++ +         + G      I+   +  I  + + T+ V     E + 
Sbjct: 216 LCIDSEHVRAILPKISKPYA---TYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEP 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRG 355
           F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N   
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DY H    +   L   R      R+++ F                  L+  D  +
Sbjct: 333 ALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALV 392

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVA 465
           +T+     E+P  I A     +   I    ++E I         +  + +L   DV++  
Sbjct: 393 LTEVYAAGEEP--IAAADSRALARAIRILGKLEPIYCENVADLPQMLLNVLQDGDVVLNM 450

Query: 466 GKG 468
           G G
Sbjct: 451 GAG 453


>gi|254805552|ref|YP_003083773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|254669094|emb|CBA07659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|261391930|emb|CAX49392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis 8013]
          Length = 452

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 144/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V    +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFSNIKGRLN-VKAGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S+   +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMRAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|227872145|ref|ZP_03990515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
 gi|227842003|gb|EEJ52263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
          Length = 434

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 142/383 (37%), Gaps = 44/383 (11%)

Query: 30  INEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++++  DSR     G +FV I G K+DGH FIP AI  GA  I      S     +    
Sbjct: 12  VDKIILDSREDCTKG-LFVPIKGEKQDGHRFIPMAIEHGASFIFTEEDCSEL---SKEYP 67

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               + V++T   L          +   ++ VTG+ GK++  + + +             
Sbjct: 68  EVRFISVESTIDALQALGGYARSLYSGLVIGVTGSVGKTTTRAMIAKALS---------- 117

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGIK-LIA 206
               +     + +    S + L   L  ++ +      +E   S   + HR+  I     
Sbjct: 118 ----VEKSVFETKGNANSQLGLPITLFSMAKENKEISVIELGISIPGEMHRIGEIASCDI 173

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTN+G  H++  +T++     KM + E    + S  +   D      ++        R
Sbjct: 174 AVFTNIGSAHLENLKTKENTCFEKMHILEGNQKEVSLYLPKKD-----AILGTLTEEKIR 228

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +                   ++++ +    K  +    +PGE    NA VA  + +++G
Sbjct: 229 AMGF---------------LGEKKLNLFFYEKKEEIPLSVPGEHMEDNASVAMAIGLSLG 273

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRI 384
           +    +L+ L +   + GR   + T   G  I  D Y  + +S++  LK + +     R 
Sbjct: 274 LHKQKLLQGLLEFQGLKGRGGRLSTE-DGIMIIDDSYNASPDSMKASLKVLASEKGAKRK 332

Query: 385 IVVFGCGGDRDQGKRPIMGKIAL 407
           I V G   +    +     +I  
Sbjct: 333 IAVLGDMNELGDNEIAYHREIGE 355


>gi|163814710|ref|ZP_02206099.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
 gi|158450345|gb|EDP27340.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
          Length = 460

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/433 (20%), Positives = 155/433 (35%), Gaps = 55/433 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            Q    GA   +   A ++ D      ++A I  +         +    L  ++L G+  
Sbjct: 48  DQLADMGALINIGQRASNITDSIDLVVYTAAIHPDNEEFKAAVEKGIPMLTRAQLLGQIM 107

Query: 115 ENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           EN    +AV+GT GK++  S +  I   +  +   I     + S   + R+         
Sbjct: 108 ENYKYSIAVSGTHGKTTTTSMLSYILIDA-DTDPTISVGGILDSIGGNIRVGKSE----- 161

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
               Y  ++   + +   S H          K       N+  DH+D+ +       +  
Sbjct: 162 ----YFVTEACEYTN---SYHA--------FKPFISIILNVDADHLDFFKDIDEIAES-F 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQ 289
            +F    PKE   I+  D  Y   V++      CR+++ G   Q K+             
Sbjct: 206 HVFATKTPKEGLVIVNGDMEYYDTVVRDLE---CRIVTFGKGTQNKYSAHNIRFDDLGHP 262

Query: 290 QVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+ V+GK+  D    + GE  VYN+L A    + +GI   ++ + L +      RFE+
Sbjct: 263 TYTLVVDGKEVTDITLRVFGEHNVYNSLSAIAAALELGISIDVIKQGLSECVGAERRFEY 322

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            GT     R+  DYAH    +   LK  +  +   +  VF                 AL 
Sbjct: 323 KGTILDNVRVMDDYAHHPTEISATLKAAQNTSYNELWCVFQPHTYSRTYALFDEFAEALK 382

Query: 409 LADIAIVTDDNPRSED------PEKIRAEIIH------GIPGFIEKGNRIEAIRTAIEML 456
           + D  IV D     E        +++  +I         +P F +  N        ++  
Sbjct: 383 VCDHVIVADIYAAREKDTGLVSAKQLAEKIAESGTDAFYLPSFDDIEN------YLLKNC 436

Query: 457 NKQDVLVVAGKGH 469
            K D+L+  G G+
Sbjct: 437 KKNDLLITMGAGN 449


>gi|186477425|ref|YP_001858895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
 gi|184193884|gb|ACC71849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
          Length = 470

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 140/406 (34%), Gaps = 26/406 (6%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   +      VS+DSR    G +FVA+ G++ D H F+    A    
Sbjct: 5   LREAAAVIPGAAVSGDDSIAFERVSTDSRTCGPGDLFVALKGDRFDAHDFLSDVAAHNVS 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++ +      +  A   +        +TR  L   A+    +    ++AVTG++GK++V
Sbjct: 65  AVLATRTPDNFEVPALRVTG-------DTRTALGALANGWRQRFSLPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     +    +T  +F  D          L   L  L+      V    
Sbjct: 118 KEMISSIFAAA---VGEASRLATAGNFNNDV--------GLPLTLFRLNETHKLAVVELG 166

Query: 190 SSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P E  A+  A
Sbjct: 167 MNHPGETALLGKIAEPTVAVVNNAQREHQEFMATVEAVALEHAAVIHALKP-EGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +DAY+      A        ++    +      V       +++I       D    + G
Sbjct: 226 NDAYAGIWRVAATGNRIIDFALN-TAEHTTEAAVKGSLEGSELSIDTAEGHVDVTLQVLG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVD-YAH 364
               +NAL A    +A G+    +   LE    V GR +    V     G  +  D Y  
Sbjct: 285 AHNAHNALAATAAALAAGVSLDAIKRGLEAFGAVKGRLQVKRAVLGAMAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +S+   +  +    S R++V+   G   D G        A   A
Sbjct: 345 NPDSMLAAIDVLAARPSPRVLVMGDMGEVGDNGPEFHREVGAYAKA 390


>gi|302383887|ref|YP_003819710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194515|gb|ADL02087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 474

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 126/349 (36%), Gaps = 31/349 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N ++ +SR I+ G +F+A+ G + DGH            A    +A +            
Sbjct: 30  NGLTYNSREIEPGDLFLALKGAR-DGHD----------FAASAFAAGAAGALVERPVDGG 78

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P +VV +T   L    +    + P     AVTG+ GK+SV   ++     +G +   I  
Sbjct: 79  PCIVVPDTLHALEALGAAARDRAPHIRRGAVTGSVGKTSVTQAIKAGLDLAGPAHASIKS 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +             PS             + V  + + A        R+  ++  A   
Sbjct: 139 YNNHIGVPLTLARMHPS-----------VERAVFEIGMNAPGEIGPLARM--VQPHAACV 185

Query: 210 TNLGRDHIDYHQTQQAYFNA-KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           T +G  HI+     +A   A K  +F+ L P    A+I  D+ + + + + A  AG RV 
Sbjct: 186 TTVGPVHIEAFADGEAGVAAEKAAIFQGLGP-GGLAVINGDNPWVELLHQAALRAGARVA 244

Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G +      L          +VT  V G+   F     G     N+L    +  A+ +
Sbjct: 245 TFGSEPAHDARLIDFTPNPEGARVTAEVYGRTHVFPLRQSGFHWGLNSLAVILMLDALDV 304

Query: 328 DSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVD--YAHTSNSLEMIL 373
                LE L     + GR E  +    +G    +D  Y     S++   
Sbjct: 305 PVETALEALAHFEPLKGRGETRLVHLPKGAFTLIDESYNANPLSMKAGF 353


>gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 447

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 163/470 (34%), Gaps = 42/470 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+  LS       ++KI   + DS+ +Q G +F A+ GN  DGH F+  
Sbjct: 1   MRAMLLEDWVSLM--LSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKH 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                  A   + A  +            ++ VD+T+  L    S         ++ +TG
Sbjct: 59  ------AATAGAVAAVVSHDYQGDSFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++   F + I              S   + A      +   + L+  ++    + V
Sbjct: 113 SVGKTTTKEFSKTILS------------SIYKTHASPKSYNSQLTVPLSLLMAE-GDEDV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQTQQAYFNAKMRLFEELLPKE 241
             + +  S  G  Q  L  ++      T++   H + + Q  Q     K  +    L K 
Sbjct: 160 MILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQGIQEILKEKSYI----LQKS 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              ++  D  Y  ++   +  A     S          K +     +  V I    +++ 
Sbjct: 216 KLQLLPKDSPYYLDLRSCSPTAEKFSFSFNDPLADFCYKAIS----RDSVVIQTPEENYC 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                  +    N L+A  L   + +    V+  L +L + P RFE   +   G ++  D
Sbjct: 272 LPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELKLPPMRFE--HSMRNGMQVIND 329

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++   L  +   + G  I++            +    ++ + A    D+    
Sbjct: 330 AYNACPEAMIAALDALPLPSDGGKIILILGHMAELGRYSEEGHALVAEKAASRGDMIFFI 389

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +    + +       +  F    +  + ++         DV+++ G
Sbjct: 390 GE--KWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV---ARYGDVILLKG 434


>gi|225377873|ref|ZP_03755094.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM
           16841]
 gi|225210311|gb|EEG92665.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM
           16841]
          Length = 195

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 12/176 (6%)

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D   +   L K  +VPGR + + T   G    +DYAH   SL  +L+ +R     R+IV
Sbjct: 14  VDREQIKAALAK-QIVPGRCQNM-TAGTGYVFLIDYAHNEMSLRNLLETLRKFKPARLIV 71

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---------P 437
           +FGCGG+R   +R  MG+ A  LAD  I+T DNPR EDPE+I  +I  G+         P
Sbjct: 72  IFGCGGNRSVLRRYQMGETAGRLADFTIITSDNPRWEDPERIMNQIEDGLRGAVCAGEKP 131

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +I+  +R  A+  A+ M  K+D++V+AGKGHE+   +  G +    D  I++E L
Sbjct: 132 SYIKISDRRAAVEYAVSMAEKRDIIVLAGKGHESYQEIK-GIRYPLDDRKIVQEAL 186


>gi|323706228|ref|ZP_08117795.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534392|gb|EGB24176.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 465

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 149/431 (34%), Gaps = 53/431 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V ++A   +D    IR+    +   +    L     +         + V G+ GK
Sbjct: 67  GADLVVYTAAVK-EDNPEMIRARELNIPTIDRATLLGEIMKKYTYG-----VGVAGSHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++  S +  + +        +  G    I      N     S  ++ +A  Y  S    +
Sbjct: 121 TTTTSLISVLLEEMNYDPTVLVGGEVDIIGG----NVRVGNSEYFITEACEYTDSFLKFY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +    F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FTQFANLVPNDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFD- 301
           +   DD  +  V+K   N    +++ G         K      K      +   G   + 
Sbjct: 217 VACGDDPNTMSVLK---NVNRNIITFGLDSNCTWNAKNIKFDEKGFPSFDVYHNGTFVER 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   + G+  + NAL    +C  +G+D     + ++K      RFEF GT   G  I  D
Sbjct: 274 FELSIVGKHNILNALATLSVCHLLGVDIKKTPDIIKKFKGTHRRFEFKGT-IDGAVIIDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP- 420
           YAH    ++  L +       RII VF                 + D ADI I+TD    
Sbjct: 333 YAHHPTEIKATLSSALNYPHNRIICVFQPHTYTRTYSLLNDFAASFDDADITIITDIYAA 392

Query: 421 --------RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--E 470
                   R+ED   +  +  + +    E  + ++ ++  I+     D+++  G G   E
Sbjct: 393 REKDTGIVRAEDLANLIKDRGNEVYYIKEFSDIVDYLKGTIKN---GDLVITIGAGDVYE 449

Query: 471 TVHIVTNGEKK 481
             +++ N  KK
Sbjct: 450 IGNMLLNFNKK 460


>gi|241760232|ref|ZP_04758328.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
 gi|241319343|gb|EER55808.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
          Length = 469

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 140/423 (33%), Gaps = 53/423 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    I   +GL    +     +++   + RL           ++       + +
Sbjct: 117 KTTTTSLTASILGAAGLDPTFV-IGGKLNAAGTNARLGKGE-----YIVAEADESDASFL 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  I    TN+  DH+D +       +     F   +P    A 
Sbjct: 171 Y---------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAF 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGKD 299
           +  D  + + ++ +         + G      I+   +  I  + + T+ V     E + 
Sbjct: 216 LCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEP 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRG 355
           F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N   
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DY H    +   L   R      R+++ F                  L+  D  +
Sbjct: 333 ALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALV 392

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVA 465
           +T+     E+P  I A     +   I    ++E I         +  + +L   DV++  
Sbjct: 393 LTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVVDLPQMLLNVLQDGDVVLNM 450

Query: 466 GKG 468
           G G
Sbjct: 451 GAG 453


>gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108]
 gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108]
          Length = 831

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 143/367 (38%), Gaps = 31/367 (8%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQ 66
           ++  E+I    I  +      I+ + +DSR +      +F A+   + DG  +IP   A+
Sbjct: 6   ENIVEIIGAQRIGNVSA---TIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYAR 62

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           G    VVS      + +Q FS +  S    LVV N  K L   A +   +    ++ +TG
Sbjct: 63  GVRNFVVSKESMKRFDVQPFSGSQFSTANFLVVSNPLKALQKLAEQHREQFQVPVIGITG 122

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-G 181
           ++GK+ V  ++ Q+                       +  +  S I +  ++  ++ Q G
Sbjct: 123 SNGKTIVKEWLHQLLSA--------------ERVIVRSPRSYNSQIGVPLSVWQMNEQSG 168

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +       S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+      
Sbjct: 169 LAIFEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNC---- 224

Query: 242 SPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              I   DD + S  V K   +A     S     + +++ KV    +   ++      D 
Sbjct: 225 DVVIYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLYIGKVEKKDDCTVISYRYLDMDN 284

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P   +  V N+L     C+ + + +  + E + +L  V  R E      + G + +
Sbjct: 285 TFTLPFIDDASVENSLNCLAACLYLMLPAEKITERMGRLEPVAMRLE--VKEGKNGCVLI 342

Query: 361 DYAHTSN 367
           + ++ S+
Sbjct: 343 NDSYNSD 349


>gi|212550421|ref|YP_002308738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548659|dbj|BAG83327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 430

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/373 (16%), Positives = 124/373 (33%), Gaps = 27/373 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++++SR      +F A+ G K DG+ +I +A+  GA   V             +  N  I
Sbjct: 16  ITTNSRICPTNSLFFALRGEKFDGNDYIMEALMSGAIYAVGDR--------NDLPENERI 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V N  + L   A+         I+A+TGT+GK++    +  +          +     
Sbjct: 68  IKVGNVLQTLQSLANYHRKLMNAKIIAITGTNGKTTTKELIATVLS---SKYKTLYTQEN 124

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           ++++                 L   S      + + AS     +      +   G  TN+
Sbjct: 125 LNNYIGVPLT----------LLRLNSEHQFAVIEMGASHVNEIRMLCQIAEPDYGIITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   +      AK  L++ +  K        D+   KE           V+  G 
Sbjct: 175 GKAHLEGFGSLDGVVKAKTELYDFIRDKGGVVFANLDNLILKEWYN-----SFSVIYYGT 229

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K     ++        +  S        +    G + + N L +  +    G++   +
Sbjct: 230 TSKAFVYGRMIGFDPTLVLEWSKNSNKNKIVTHFVGGYNLENILASICVANYFGVEDYRI 289

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              +     +  R +   T      I   Y    +S+ + L N   +     +V+ G  G
Sbjct: 290 NVVIANYIPINNRSQNCKTKKNN-LIVDAYNANPDSMRVALDNFYKLRISPKMVILGEMG 348

Query: 393 DRDQGKRPIMGKI 405
           +     +    K+
Sbjct: 349 ELGSYSKEEHQKV 361


>gi|260589032|ref|ZP_05854945.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
 gi|260540811|gb|EEX21380.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
          Length = 474

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 137/425 (32%), Gaps = 48/425 (11%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
            +GA+  +   A ++ D      ++A I  + P       +    +  + L G+  +N  
Sbjct: 67  EKGAKIYIGQRASNITDDIDLVVYTAAIHEDNPEFACAKEKGIPMITRAELLGQIMKNYR 126

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +   +            I      N     S  ++ +A  
Sbjct: 127 LPIAVAGTHGKTTTTSMISHVLLEAEADPTI--SVGGILPAIHGNIRVGNSETFITEACE 184

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S                               N+  DH+D+ +      ++  RLF 
Sbjct: 185 YTNSFLSFF-------------------PKISIILNIDADHLDFFKDLDDIRHS-FRLFA 224

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS- 294
           E LP +   II  D    +E+  +     C V++ G +    +             +   
Sbjct: 225 EKLPADGTLIINGDIPNVEEITDKLP---CEVITYGLEKAADYTAANITFDETAHASFDC 281

Query: 295 -VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G+    F   +PG   V NAL A  L   +G D   V   +        RF++ G  
Sbjct: 282 LHKGQCIGRFSLAVPGLHNVSNALSAIALGEKVGFDLDTVRRGILHFGGTDRRFQYKGKV 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G  I  DYAH    +   LK            VF                  L  A+ 
Sbjct: 342 A-GVTIIDDYAHHPTEIAATLKTAANYPHKTTWCVFQPHTYTRTKALMDEFADVLATAER 400

Query: 413 AIVTDDNPRSEDP------EKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+ D     E          +  +I    G   +    + IEA    +E     DVL+ 
Sbjct: 401 VILADIYAARETDNLGVSSSDLCDKINERGGKAYYFPTFDEIEA--FLLENCINGDVLIT 458

Query: 465 AGKGH 469
            G G 
Sbjct: 459 MGAGD 463


>gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057]
 gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057]
          Length = 834

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 164/478 (34%), Gaps = 48/478 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +      I+ + +DSR +      +F A+   + DG  +IP   A+G 
Sbjct: 5   IESITESMGARRVGSVPATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYARGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSN-------TPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
              VVS        S  ++            L+V N  K L   A +  GK    ++ +T
Sbjct: 65  RNFVVSEESYRDIESGKLKPTANDQSPVVNYLIVPNPLKALQKLAEQHRGKFQIPVIGIT 124

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+ V  ++ Q+          I P   I    +        P+ +      ++ Q 
Sbjct: 125 GSNGKTIVKEWLHQL----------ISPERAIVRSPRSYNSQIGVPLSVW----QMNEQS 170

Query: 182 VTHVSVEA-SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              +     S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+     
Sbjct: 171 ELAIFEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLVLFKNC--- 227

Query: 241 ESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               I   DD + S  V K   +A     S     + +++ KV        ++      D
Sbjct: 228 -DVVIYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLYISKVEKKEECTVISYRYLDMD 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P   +  + N+L     C+ + + +  + E + KL  V  R E     +    I 
Sbjct: 287 NTFTLPFIDDASIENSLNCLAACLYLMLPAEKITERMAKLEPVAMRLEVKEGKNGCLLIN 346

Query: 360 VDYAHTSNSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             Y     SL++ L     R++ +G    +            P + +    L        
Sbjct: 347 DSYNSDLGSLDIALNFLYRRSLVNGLKRTLVLSDILETGQNTPTLYRQVAQLV------- 399

Query: 418 DNPRS-EDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLN---KQDVLVVAGK 467
            N R  E    +  EI      F  +     +    IR AIE      + +++++ G 
Sbjct: 400 -NSRGIERIIGVGNEIATCAARFDVEKSFYPDTNTLIR-AIERGELRLENEIILIKGA 455


>gi|182677686|ref|YP_001831832.1| UDP-N-acetylmuramate--L-alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|229486470|sp|B2IGG1|MURC_BEII9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182633569|gb|ACB94343.1| UDP-N-acetylmuramate--alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 476

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 150/435 (34%), Gaps = 60/435 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKHPE 115
           +GA   +     +L D +       I+ + P LV     +        + A  +  K   
Sbjct: 51  KGATIAIGHKPENLGDAAVVVVSTAIKRDNPELVHARELRLPVVRRAEMLAELMRLKQC- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +   +G     +     I+++  + RL     + +    S
Sbjct: 110 --VAVAGTHGKTTTTSLVATLLD-AGKFDPTVINGGIINAYGTNARLGAGDWMVVEADES 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  +H+D+ +T  A   A  R F 
Sbjct: 167 D--------------------GTFLKLPADIAIVTNIDPEHLDHFKTFDAIKQA-FRAFI 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           E +P    A++  D    +E++    +   R+++ G      + L  V       +  + 
Sbjct: 206 ENIPFYGFAVMCLDHPVVQELVGTIEDR--RIITYGENPQADMRLVDVNLDGGMSRFNVV 263

Query: 295 V------EGKDF------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           V      +GK F      D L P+PG     NA  A  + + +G+    +   L     V
Sbjct: 264 VRDRKAGQGKRFEERRVEDLLMPMPGLHNALNATAALSVALQLGMSDDAIRSALRGFGGV 323

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RF   G    G +I+ DY H    +  +L+  R  T G++I V               
Sbjct: 324 KRRFTRTGEW-NGAQIFDDYGHHPVEIAAVLRAARASTKGQVIAVVQPHRYTRLHSLFNE 382

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--------IE 454
                + AD+ IV D     E P    A+  H +      G+R   +  A          
Sbjct: 383 FASCFNDADVVIVADVYAAGEPPID-GADKEHLMRALKAFGHRQAMVLRAPEDLPALIRS 441

Query: 455 MLNKQDVLVVAGKGH 469
           + +  D +V  G G+
Sbjct: 442 LAHPGDYVVCLGAGN 456


>gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
 gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
          Length = 825

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 141/403 (34%), Gaps = 29/403 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +        + KI  + +DSR +      +F A+   + DGH +I +   +G 
Sbjct: 5   IEKVTTLIGARRFGSTDAKIGFILTDSRSLCFPEETLFFALKSGRNDGHRYILELYHRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV+    +    A+       L V ++ + L   A R   +    I+ +TG++GK+ 
Sbjct: 65  RNFVVT---EVPANYASDYPQANFLKVVDSLESLQRLAERHRDEFNIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  ++L    S      V      
Sbjct: 122 VKEWLNQLLSD--------DLFVTRSPRSYNSQVGVPLSVWLLNEHSQ-----VGVFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+      TNLG  H +   +++A    K+ LF          +   
Sbjct: 169 ISQPGEMLVLRDIIQPTIAVLTNLGDAHQENFVSREAKCKEKLVLF----HDAKIVVYNG 224

Query: 249 DDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD+   + +    +        S         +K +        +T   +G +  +  P 
Sbjct: 225 DDSLISDCVNALEDFRGERLYWSCSDHNAPFFVKSIEKKATATTITYIYKGIESWYSLPF 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
             +  + N+   A + + +G+    + E + +L  +  R E V     G  +  D Y   
Sbjct: 285 IDDASITNSFACAAVALTLGVSKDALDERMLQLEPIAMRLE-VKQGQHGCTLINDSYNSD 343

Query: 366 SNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            NSL++ L  +         R  ++             +  ++
Sbjct: 344 INSLDIALDFMNRRPDHQGRRHTLILSDIYQSGMTTEELYKEV 386


>gi|6723459|emb|CAB66325.1| MurC protein [Corynebacterium glutamicum]
          Length = 486

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 94/426 (22%), Positives = 154/426 (36%), Gaps = 56/426 (13%)

Query: 70  AIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R      P++   +      L    L G      + + GT GK
Sbjct: 80  VVVTSFAAIPQDNPELVRAREEGIPVIRRSD------LLGELLEG---STQVLIAGTHGK 130

Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G+   F IG                     L KA +          
Sbjct: 131 TSTTSMSVVAMQAAGMDPSFAIG-------------------GQLNKAGTNAHHGTGEVF 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA        R    K      TN+  DH+D+ +T +AYF      F   +      +
Sbjct: 172 IAEADESDASLLRY---KPNVAVVTNVEPDHLDFFKTPEAYFQV-FDDFAGRITPNGKLV 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---------IHNKQQVTISVE 296
           +  +D ++ E+ +R+   G + +  G +       +V A         +    + TI+++
Sbjct: 228 VCLNDPHAAELGERSVRKGIKTVGYGTRDAVQAHPEVPAMATVVDSQVVAEGTRATINID 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----N 352
           G++   +  +PG+  V N   A      +G D   ++E L     V  RFEF G      
Sbjct: 288 GQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGK 347

Query: 353 SRGGRIYVDYAHTSNSLEMILKNI----RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             G  IY DYAH    +  +L+      +    GR+IV F         +       AL 
Sbjct: 348 FNGAAIYDDYAHHPTEVTAVLRRCATRVKAAGKGRVIVAFQPHLYSRTMEFQKEFAEALS 407

Query: 409 LADIAIVTDDNPRSEDP-EKIRAEII-HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
           LAD A+V +     E P + + +EII   +   +       A+     E+    D+++  
Sbjct: 408 LADAAVVLEIYGAREQPVDGVSSEIITDAMTIPVVYEPNFSAVPERIAEIAGPNDIVLTM 467

Query: 466 GKGHET 471
           G G  T
Sbjct: 468 GAGSVT 473


>gi|296269387|ref|YP_003652019.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
 gi|296092174|gb|ADG88126.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
          Length = 472

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 93/452 (20%), Positives = 143/452 (31%), Gaps = 60/452 (13%)

Query: 50  VGNKEDGHLFIPQAI-----AQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTR 99
            G +  G      A+       GA   +  +A ++ D      S  IR + P L     R
Sbjct: 38  RGVRVSGSDVRDSAVLAELRELGATVHIGHAAGNVGDVDTVVVSTAIRDSNPELQEARRR 97

Query: 100 KF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTST 152
                   +  A+ + G+     +AV GT GK++  S +    Q+ G        G  +T
Sbjct: 98  NLRVIPRAAALAAVMEGR---TGIAVAGTHGKTTTTSMLTVALQKCGADPSYCVGGLLAT 154

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
               A D                     G   V+    S G        ++      TN+
Sbjct: 155 TGLGADDG-------------------AGDLFVAEADESDGSFL----MLRPAIAIVTNV 191

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH+D +   +A   +  R  E +    S  ++ ADD  S  +   A   G  V++ G 
Sbjct: 192 EADHLDNYGDVRAVHESFARFVERV---GSLLVLCADDPGSAALAAPARERGLTVVTYGE 248

Query: 273 Q-GKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             G       V       +  ++      G        +PG     NA     +   +G+
Sbjct: 249 SAGADYRTVDVVPEGLGVEFAVAAGSPGPGWPLRVRLAVPGRHNALNATAVIAVADRLGL 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRII 385
               V   L        RFE  G    G  ++  YAH    L   L+  R + +  GR+I
Sbjct: 309 PLGEVAAGLAAFGGAKRRFEAKGEAG-GVAVFDSYAHHPTELTADLRAAREVNAGRGRVI 367

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGF 439
            VF                 AL LAD  IV D     EDPE       I   +       
Sbjct: 368 AVFQPHLYSRTRFFADAFGAALGLADEVIVLDVYGAREDPEPGVTGALIAERVPLPADRV 427

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +   +R              D+++  G G  T
Sbjct: 428 VYAPDRESVPALVAGRARPGDIVLTMGAGDVT 459


>gi|91977859|ref|YP_570518.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
 gi|123762580|sp|Q133X2|MURC_RHOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91684315|gb|ABE40617.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
          Length = 467

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 137/428 (32%), Gaps = 48/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      IA GA+ +VVS+A    +          I VV        L   +       
Sbjct: 58  GHK--ADNIA-GADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC----- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   +G     +     I+++  + RL     + +    S
Sbjct: 110 --IAIAGTHGKTTTTSMVAALLD-AGDVDPTVINGGIINAYGTNARLGAGDWMVVEADES 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  +H+D+ +T  A  +A  R+F 
Sbjct: 167 D--------------------GTFLKLPADVAVVTNVDPEHLDHFKTFDAVQDA-FRIFV 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E +P    A++  D    + ++ +  +          Q     L  +          ++ 
Sbjct: 206 ENVPFYGFAVMCIDHPVVQALVGKIEDRRIITYGENPQADA-RLLDLKPSGAGSTFKVAF 264

Query: 296 EGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +         D + P+PG     NA+ A  +   +G+    + + L     V  RF  
Sbjct: 265 RDRKAGTAHEITDLMLPMPGPHNALNAVAAIAVAHELGLSDDTIRKALAAFGGVRRRFTK 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G    G  I  DY H    +  +LK  R  TS ++I V                    +
Sbjct: 325 TGEW-NGVTIIDDYGHHPVEIAAVLKAARQSTSAKVIAVVQPHRFTRLQSLFEEFCTCFN 383

Query: 409 LADIAIVTDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            AD  IV D  P  E P         +     HG    I   +          +    D 
Sbjct: 384 DADTVIVADVYPAGEAPIAGIDRDHFVLGLRAHGHREVIPLQDSASLAGVVAGVARSGDY 443

Query: 462 LVVAGKGH 469
           +V  G G+
Sbjct: 444 VVCLGAGN 451


>gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 833

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 169/477 (35%), Gaps = 47/477 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +  ++S   +      I+ + +DSR +      +F A+   + DG  +IP   ++G 
Sbjct: 5   IETIAERISARRVGDTPATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYSRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSN------TPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              VVS        S  +  +         LVV N  K L   A +   +    ++ +TG
Sbjct: 65  RNFVVSKEAYKWVESGQLAMSNSDMLAVNFLVVANPLKALQKLAEQHREQFQIPVIGITG 124

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+ V  ++ Q+                 S  + ++++  P  ++     S L+    
Sbjct: 125 SNGKTIVKEWLHQLLS--------PERVIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEA 176

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                  S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+       
Sbjct: 177 -----GISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKNC----D 227

Query: 243 PAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             I   DD + S  V K   +A     S     + + + KV    +   ++      D  
Sbjct: 228 VVIYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVISYRYLEMDNT 287

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F+ P   +  + N+L     C+ + + +  + E +  L  V  R E     +    I   
Sbjct: 288 FILPFIDDASIENSLNCLAACLYLMLPAEKITERMATLEPVAMRLEVKEGKNGCLLINDS 347

Query: 362 YAHTSNSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           Y     SL++ L     R+ ++G    +            P + +    LA         
Sbjct: 348 YNSDLASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQLAG-------- 399

Query: 420 PRSEDPEKIR---AEIIHGIPGF-IEKG--NRIEAIRTAIEMLN---KQDVLVVAGK 467
             S   E+I    +EI      F IEK      EA+  AI       + +++++ G 
Sbjct: 400 --SRGIERIIGVGSEISSCAARFDIEKAFYPNTEALLRAISRGELRLENEIILIKGA 454


>gi|126729253|ref|ZP_01745067.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
 gi|126710243|gb|EBA09295.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
          Length = 465

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 136/413 (32%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V+SSA      +     R   P++        L            ++ +A+ GT 
Sbjct: 70  GADVVVISSAIKPGNPELDEARRRGLPVVRRAEMLAELMRL---------KSNIAIAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +   +G     +     I ++  + R+     +                
Sbjct: 121 GKTTTTTMVATLLD-AGNFDPTVVNGGIIHAYGSNARMGQGEWM---------------- 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VEA       +RL          TN+  +H+++  + +         F   +P    A
Sbjct: 164 -VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGSIENLRQG-FYDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD-F 302
           +   D    + ++ R  +          Q     +            V   V G+  +  
Sbjct: 219 VCCTDHPEVQALVGRVTDRRVVTYGFNAQADVRAMGLRYEKGVAHFDVHFQVSGEVIEGM 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I  DY
Sbjct: 279 TLPMPGDHNVSNALSAIAVARHLGMTGEEIRAALAAFGGVNRRFTKVG-EVNGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  + GR+I V                    + AD+  + +     
Sbjct: 338 GHHPVEIAAVLKAARQASEGRVIAVHQPHRYTRLHHHFEEFCSCFNEADVVAIAEVYAAG 397

Query: 423 EDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
           E P     R +++ G+     +  R     + +   + E     D++V  G G
Sbjct: 398 ETPIEGATRDDLVAGLVRHGHRHARALRDEDDLERLVREQAQPGDMVVCLGAG 450


>gi|312126685|ref|YP_003991559.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776704|gb|ADQ06190.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 455

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 149/412 (36%), Gaps = 50/412 (12%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    + +    L +    +FL L          +N++A+ GT GK++  S
Sbjct: 64  VIYTAAISKDNPELLAAKRMNLKIYERAEFLGLLMRNF-----KNVIAIAGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +     PT  + +F +          ++  +  YL  +   +V      
Sbjct: 119 MIGYILKKANYN-----PTILVGAFVKQL-----GGNFVIGSKDYLVVEACEYVDS---- 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +  N+  + F + +P     +   DD 
Sbjct: 165 -------FLKFNPTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGE 309
             K+++ + H     + +   +   I    +       +  +     +        +PG 
Sbjct: 217 NVKDIISKFHTQVVCIST--KEKADIFADNISCNDGYYEFDVKNNNNEILAHIKLNIPGF 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYNAL A  +   + ++S  + + L +      R E VG    G  +Y DYAH    +
Sbjct: 275 HNVYNALAAFAVASKLRVESLTIEQALSEFCGASRRLEKVG-EFNGIYLYDDYAHHPTEI 333

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP---- 425
           +  L  ++ I+ G+++ +F                 +L LAD  IVTD     E      
Sbjct: 334 KATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLKLADKVIVTDVYAAREKNIFGI 393

Query: 426 --EKI---RAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             EK+     EI      I  F +           ++   K D++   G G 
Sbjct: 394 TSEKLYLKLKEIGIDCEYISNFDDIAC------YVVKEAKKGDIIATIGAGD 439


>gi|320093979|ref|ZP_08025806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979085|gb|EFW10601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 468

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 138/447 (30%), Gaps = 38/447 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR    G ++VA  G   DGH ++  A   GA   +V     L D           
Sbjct: 27  VVTDSREAAPGGVYVARRGENADGHDYVASAARAGAVCALVERVVDLSDCPP-----ITQ 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +VV +    L   A             +++AVTG+ GK++    + Q+      +     
Sbjct: 82  VVVGDATGALGDLARAHLEALRAGGAIDVVAVTGSVGKTTTKDLLLQVLSADAPTVAPRL 141

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +              S  +L              + + AS  G   +           
Sbjct: 142 SFNNEVGLPLTVLTADESTRHL-------------VLEMGASGPGHIAYLTRIAPPDVAI 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
              +G  H+    +      AK  L E    + + A++ ADD     +  RA     R  
Sbjct: 189 ELVVGHAHMGGFGSVAGVAEAKAELIEG-SRQGATAVLNADDPNVAAMAPRAKGPVVRFS 247

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G     +          +   T++           L G   V NAL AA    A+G+ 
Sbjct: 248 PSGVGADVVAEDVRVDAAGRASFTLAAPEGREPVSLSLVGAHHVANALAAAAGARALGLG 307

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVD-YAHTSNSLEMILKNIRTITSGRI 384
             L+   L     +      V     G     +  D Y    +S+   +  +  I  GR 
Sbjct: 308 LPLIARALSGARALSPHRMDVRGLRIGAVPLTLIDDSYNANIDSMRAAVAALEAIGKGRR 367

Query: 385 IV-----VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +     +   G D     R +   ++    D  I    +          +E    +P  
Sbjct: 368 TIAVLSEMLELGEDSPATHRAVGAMLSGAGVDALIGLGRDAHY------YSEGAASVPDR 421

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   +   A+   ++ L    V++V G
Sbjct: 422 VLVEDPGAALAAVLDRLTDDCVVLVKG 448


>gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 453

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 154/460 (33%), Gaps = 39/460 (8%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +  V +DSR +  G +FV + G K D H F+  A A GA A +      ++   A 
Sbjct: 21  PDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAAFASGAAAALTQEHMRMEAEEA- 79

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  + VD+T+  L   A+    +    ++ +TG++GK++           +G    
Sbjct: 80  ------WIAVDSTQLALQQIAAAYRQRFSIPVVGITGSAGKTTTKEMTALALS-AGYKVM 132

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           + G          ++++  P  ++               V +  S  G         +  
Sbjct: 133 KTG-------GNHNSQIGLPLMMFQFSW-----EHEAAVVEMGISDFGEMARLAQVAEPK 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TNLG  HI   +TQ      K+ + +    + S   +  DD     +  R      
Sbjct: 181 YAVMTNLGITHIGQLKTQGNILREKLHITDRFT-QGSVLFLNGDDPMLAGL--RGKTGYE 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIA 324
            V            + +              G +  +   P+ G   V +AL A  +   
Sbjct: 238 TVFYGRLPWCDFRAEGITVQEETTAFRCLAPGSESVEVTLPVLGMHHVLDALAALAVAER 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
           +G+        L     +  R +    N     +  D Y  +  + +  L  +    +GR
Sbjct: 298 LGVPLKRAAAALRDYRPLAMRQQIYHVNE--VAVIDDSYNSSPGAAKSSLSVLAGFRAGR 355

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA---EIIHGIP 437
            + V       G+  +     +G  A +     ++T      ++ + +      +  GI 
Sbjct: 356 RVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLT----VGQEAKAVAEGARSVRAGID 411

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
             +   N  +A       L+  D ++V G +G  T  IV 
Sbjct: 412 CRVL-DNNYQAAEELKSFLSPGDAVLVKGSRGMHTEEIVR 450


>gi|109892713|sp|Q2Y639|MURC_NITMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 493

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 92/452 (20%), Positives = 151/452 (33%), Gaps = 66/452 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+A+V S+A    +        + + VV        L   R         +A+ GT GK+
Sbjct: 65  ADAVVTSTAILPDNPEVLAARESKVPVVPRAIMLAELLRLR-------QGIAIAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +   +G+      PT  I    +                     +G   V  
Sbjct: 118 TTTSLITSVLAEAGMD-----PTFVIGGRLEAAGSHAK------------LGRGEFIVVE 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S     H    ++ +    TN+  DH+D ++            F + LP    A++ 
Sbjct: 161 ADESDASFLH----LQPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFVQHLPFYGMAVLC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT--ISVEGKD--FDF 302
            DDA+  E+M         V + G           +     +   T  I V GK      
Sbjct: 217 VDDAHVLEIMPAITKP---VTTYGLSETAQVRAADIRHSEGQMHFTALIGVNGKTRKLKI 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--------TNSR 354
           +  LPG   V NAL A  +C  +G+    ++  L     V  RF+  G        T   
Sbjct: 274 VLNLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQRYGEIPLTDPETGRN 333

Query: 355 G-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADI 412
           G   +  DY H    +   +   R    GR +V+ F                  L  AD+
Sbjct: 334 GSFTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDLFEDFVKVLSTADV 393

Query: 413 AIVTDDNPRSEDPEKIRAE----------IIHGIPGFIEKGNR-IEAIRTAIEMLNKQDV 461
            ++T+     E P  I A+          +    P F+E+ +   EAI     +   +DV
Sbjct: 394 LLLTEVYSAGEAP-IIAADSKSLARSLRVLGKVEPIFVERVDELEEAIH---SIARDKDV 449

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++V G G      V      +S D  +   +L
Sbjct: 450 VLVMGAGS-----VGGVAPTLSRDSQVEARLL 476


>gi|163841228|ref|YP_001625633.1| UDP-N-acetylmuramate--L-alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
 gi|189029025|sp|A9WRD7|MURC_RENSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|162954704|gb|ABY24219.1| UDP-N-acetylmuramate--alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 465

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 91/425 (21%), Positives = 156/425 (36%), Gaps = 37/425 (8%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    Q +A GA+ +V+S+A    +          + V+  +    +  A   
Sbjct: 53  GASVHAGH--AAQNVA-GADTVVISTAIRANNPELEFARTQGLRVLHRSEALAAAMAQ-- 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                + ++AV GT GK++  + +  + + +GL         T+ +   +          
Sbjct: 108 -----DTVVAVAGTHGKTTTTAMIAVLLREAGLDPSFA-VGGTVPALGVNAAHGAG---- 157

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                      G+     + S      +R           TN   DH+D++ T +A   A
Sbjct: 158 -----------GIFVAEADESDGSFLNYR-----PQIAVVTNAEPDHLDHYGTAEAVMEA 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             + F  L+P +   +   DD  +  + K+A   G RV++ G              H   
Sbjct: 202 -FQSFIGLIPADGLLVACTDDDGALALAKQAAARGTRVVTYGRSAAAEVWLINDGAHRAI 260

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +    +  +       +PGE    NAL A  + + +G+++   L  L        RFEF 
Sbjct: 261 EFITPIGPQRLVLELQVPGEHNALNALAAFAVALELGVEAEQALSALAGFTGAARRFEFK 320

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALD 408
           G   RG R++ DYAH    +   L   RT+  G  ++V F         +       AL 
Sbjct: 321 G-QVRGIRVFDDYAHHPTEVRAALTAARTVADGHHVLVLFQPHLFSRTHEFAAEFAAALS 379

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           LAD  +V D  P  ED  P      I         + +R +AI+  +      D+++  G
Sbjct: 380 LADSIMVLDVYPAREDPIPGVTGELITEANAKLTFQPDRAKAIQELVARTANGDIVLTVG 439

Query: 467 KGHET 471
            G  T
Sbjct: 440 AGDVT 444


>gi|107021634|ref|YP_619961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688579|ref|YP_834202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891823|gb|ABF74988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646668|gb|ABK07309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia HI2424]
          Length = 468

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 143/403 (35%), Gaps = 29/403 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
              N VS+DSR + AG +FVA+ G + D H F+          +    A +     A   
Sbjct: 24  VTFNRVSTDSRTVGAGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPAG 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++    TR  L   A     + P  ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  IAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
                +++            + L   L  LS+     V     +H  +   L  +     
Sbjct: 136 ATAGNLNN-----------DVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAPTV 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  T  A       +    LP +  A+  ADDAY+      A      
Sbjct: 185 ALVNNAQREHQEFMATVDAVALEHAAVI-HALPPDGVAVFPADDAYAGIWRVAATGNRIL 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++ +  +  +  +V    +  ++ I              GE    NAL A    +  G
Sbjct: 244 DFAL-HDAERQNDAQVVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAATAAALGAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           +  + + + LE    V GR +    +     G  +  D Y    +S+   +  +    + 
Sbjct: 303 VALSAIRQGLEAFEPVKGRLQVKQASVGSLGGATVVDDTYNANPDSMRAAIDVLAAHPAP 362

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
           R++V+   G   D+G    R I         D      D  R 
Sbjct: 363 RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|332704500|ref|ZP_08424588.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554649|gb|EGJ51693.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 454

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 150/416 (36%), Gaps = 52/416 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A    +          I V+    + L+       G      +AV GT GK+
Sbjct: 65  AHVVVKSTAVPETNPEVQEARRLGIPVIPRA-EMLAELMRLRTG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S + +I   +GL      PT  I                       L+S G      
Sbjct: 118 TTTSLLAEIFTAAGLD-----PTVIIGG--------------------RLNSWGANAYLG 152

Query: 188 EASSHGLDQHRLDG----IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           E      +    DG    +  I    TN+  DH+D++  QQA   A    F   +P    
Sbjct: 153 EGEYLIAEADESDGSFLVLAPIITIVTNVDADHLDFYPDQQAIDRAFTE-FMNKVPFYGV 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
            ++  DD   + ++        R+++ G +       ++ +   +    + V+ + + D 
Sbjct: 212 NVVCGDDPGVERIL---PGIRRRIMTYGLRPGNRIRGEITSCQERCIFKLYVDEEYWADV 268

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           +   PG   V N++ A G+ +  G+    +L+ LE+   V  RFE  G    G  +  DY
Sbjct: 269 VLNKPGRHNVLNSMAAIGVALEAGLPKEAILQGLERFGGVGRRFEIKGEKG-GILVVDDY 327

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNP 420
            H    +   L   +     R +VV      R    + + G      D+AD+ ++T+   
Sbjct: 328 GHHPAEIGATLATAKDCYPERRLVV-AFQPHRFTRTKALFGDFCKVFDVADVLLLTEIYA 386

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
            SE P        +   I       +      E +  A+  +L   DVL+  G G+
Sbjct: 387 ASEAPIPGVSGLSLAQGIRQVGKVDVSFFPNFEEMEAALPGLLRPGDVLLTLGAGN 442


>gi|168187029|ref|ZP_02621664.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
 gi|169295057|gb|EDS77190.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
          Length = 458

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 146/420 (34%), Gaps = 41/420 (9%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
            +GAE  +     +L++     ++A I SN P LV        ++  +   G   +    
Sbjct: 53  DKGAEIYIGHDGNNLKNVDLVVYTAAIPSNNPELVKARELNIPTMDRAEFLGHVMQGHKY 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A++GT GK++  S +  I   S      I     +     + R+   S  ++ +A  Y
Sbjct: 113 NVAISGTHGKTTTTSMLSHI-TLSANLDPTILVGGNLDVINGNVRVG-NSEYFVTEACEY 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +S    +                      G   N+  DH+D+++      N  ++ F +
Sbjct: 171 KASFLKFY-------------------PYVGIILNIEADHLDFYKDINDIQNTFLK-FAK 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+P +   I+ ADD      +  +    C V++ G     +  K +   +      +   
Sbjct: 211 LIPSDGFLIVNADDE---RCIAVSKEVDCNVITFGIDNGEVRAKNIVFTNGHPTFDVCKN 267

Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +  F     +PG   + +AL +    +++ +    ++E L   +    RFE  G    G
Sbjct: 268 EEKLFTLTLNVPGTHNILDALASISSALSLNVPVNSIIEGLSTFNGAHRRFEIKG-KVDG 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH    ++  L   +     RI  VF                 +   AD  ++
Sbjct: 327 ITVVDDYAHHPTEIKAALNAAKNFPHKRIFCVFQPHTYSRTISLFDDFSNSFSNADTLVL 386

Query: 416 TDDNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D     E    I        +I           +  + +    + L + D+L+  G G 
Sbjct: 387 ADIYAAREKDTGIVSSDMLGDKIRENGVNCKNLHSFDDIVTFLKDELQEGDLLITIGAGD 446


>gi|331696616|ref|YP_004332855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951305|gb|AEA25002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
          Length = 488

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 130/421 (30%), Gaps = 61/421 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF- 59
           M+L D+       L            + ++  V  DSR I  G +F+A+ G + DGH F 
Sbjct: 4   MRLADVAAATGGRLHRASG-------DERVTAVEFDSRAIGPGGLFLALPGERVDGHDFA 56

Query: 60  -----------------------IPQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVV 95
                                  +P A A+ GA   +          +            
Sbjct: 57  AAAVAAGAAGVLAARAVDAPAVVVPPAEARSGAGTYLAEHDPDGAGAAVLAALARLARHN 116

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +             G     ++ VTG+SGK+S    +  +    G +    G  +    
Sbjct: 117 VDALTA--------GGPPGLAVVGVTGSSGKTSTKDLLAAVLAPLGPTVAPPGSFNNELG 168

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                     S  +L   LS             A   G             G   N+GR 
Sbjct: 169 HPWTALRADASTRHLVLELS-------------ARGPGHIAALCRVAPPRIGVVLNVGRA 215

Query: 216 HIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           H+    + +A   AK  L E L        A++ ADD     V+  A     R++SVG  
Sbjct: 216 HLGEFGSPEAIAQAKGELVEALPAGGDGGVAVLNADDP---AVIGMAPRTAARLVSVGRS 272

Query: 274 -GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G  +    V +   + +  +     + D    L G   V NAL AA + + +G     V
Sbjct: 273 AGATVRAVDVGSEAGRARFRLVSPAGEADVALRLVGTHHVGNALAAAAVALELGATPDSV 332

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGC 390
              L     V      V   + G  +  D Y     S+   L  +  +  GR    V G 
Sbjct: 333 AASLGAAGPVSRWRMEVADRADGVTVVNDAYNANPESMRAALTALTDLGRGRRTWAVLGR 392

Query: 391 G 391
            
Sbjct: 393 M 393


>gi|225077394|ref|ZP_03720593.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
 gi|224951278|gb|EEG32487.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
          Length = 469

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 139/423 (32%), Gaps = 53/423 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    I   +GL    +     +++   + RL           ++       + +
Sbjct: 117 KTTTTSLTASILGAAGLDPTFV-IGGKLNAAGTNARLGKGE-----YIVAEADESDASFL 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  I    TN+  DH+D +       +     F   +P    A 
Sbjct: 171 Y---------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAF 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGKD 299
           +  D  + + ++ +         + G      I+   +  +  + + T+ V     E + 
Sbjct: 216 LCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEP 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRG 355
           F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N   
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGT 332

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DY H    +   L   R      R+++ F                  L+  D  +
Sbjct: 333 ALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALV 392

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVA 465
           +T+     E+P  I A     +   I    ++E I            + +L   D+++  
Sbjct: 393 LTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNM 450

Query: 466 GKG 468
           G G
Sbjct: 451 GAG 453


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040773|gb|ACT57569.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 146/417 (35%), Gaps = 47/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +V+S+A    +          I ++  +     L   R         ++V+GT GK+
Sbjct: 67  AEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCR-------KSISVSGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  + ++ G     +     I+S+  + R+ T   I                  V
Sbjct: 120 TTTSLIAALLEQ-GKFDPTVINGGIINSYGTNARIGTSEWI-----------------VV 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RL          TN+  +H+DY+    A   A  + F + +P    A++ 
Sbjct: 162 EADESDGTFIRLPS---DIVVVTNIDPEHLDYYGDFNAIRAAFYK-FIDNIPFYGFAVVC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  N   ++++ G +    I    +     +    +SV+G         
Sbjct: 218 MDHPEVRSLIARIQNR--KIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVI 275

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D   PL GE  + NA  +  +   +G+ S  V + L     +  RF  VG       ++
Sbjct: 276 KDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVW-NDVHVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +L  +R I   +II +                      ADI +++   
Sbjct: 335 DDYGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVY 394

Query: 420 PRSED-------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E        PE ++   + G P      +    +   + +    D ++  G G+
Sbjct: 395 SAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGN 451


>gi|288939895|ref|YP_003442135.1| UDP-N-acetylmuramate/alanine ligase [Allochromatium vinosum DSM
           180]
 gi|288895267|gb|ADC61103.1| UDP-N-acetylmuramate/alanine ligase [Allochromatium vinosum DSM
           180]
          Length = 475

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 145/432 (33%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q     A+A+VVS+A    +          I +V    + L+      YG    
Sbjct: 66  GHR-AEQVSE--ADAVVVSTAIDETNPEIQQARERRIPIVRRA-EMLAELMRFYYG---- 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S V  I    G   +F IG     +           S  YL    
Sbjct: 118 --VAVAGTHGKTTTTSLVASILAEGGLDPTFVIGGRLNSAG----ANARLGSTKYLV--- 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  +             F
Sbjct: 169 AEADESDASFLY---------------LQPMVSIVTNIDADHMRTYGNDFDRLRQTFMEF 213

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   + ++         V + G + +   L+         + +  
Sbjct: 214 LHHLPFYGLAVLCIDDPEVRALVPEVPRP---VRTYGTRPEA-DLRASDIRQEGMRTSFL 269

Query: 295 VEGKDFD----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF---E 347
           V G +F+        LPG   V NAL A  + + +G++   ++  L     V  RF   E
Sbjct: 270 VHGAEFERPLAVTLNLPGRHNVLNALAAISVALELGVEDEAIVRALAGFQGVGRRFVARE 329

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIA 406
            V    R   +  DY H    L   L   R    G R+++VF         ++       
Sbjct: 330 VVDPQGRRLLVVDDYGHHPRELAATLAAAREGWPGRRLVLVFQPHRYSRTQEQFEDFVEV 389

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----AI-----EMLN 457
           L   D  ++ +  P  E P  I       +   I     ++ I      A+      ++ 
Sbjct: 390 LSTPDALVLCEVYPAGETP--IPGADGRALSRAIRVRGELDPIFAQGLDAVPGLLANIIR 447

Query: 458 KQDVLVVAGKGH 469
             D+L+V+G G 
Sbjct: 448 DGDILLVSGAGD 459


>gi|91205778|ref|YP_538133.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii RML369-C]
 gi|109892734|sp|Q1RHX0|MURC_RICBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91069322|gb|ABE05044.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia bellii RML369-C]
          Length = 478

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 150/438 (34%), Gaps = 63/438 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   PQ I      +VVSSA +  +      +    PI+     R+   + A  +  K 
Sbjct: 64  GHT--PQNITN-VSYVVVSSAINRNNPEVKEALERKIPII-----RRA-EMLAELMRLKC 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G+ GK++  S V  + + +GL        + I+    +NR T          
Sbjct: 115 S---VAVSGSHGKTTTTSLVACLFEAAGLH------PTVINGGIINNRSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++      NA  R 
Sbjct: 166 IAEADESDATFI---------------SIPSTIAIITNIDPEHLDYYKDFDTLINA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    +E++        +V++ G      H+       +    T 
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRELVNNITER--KVITYGIDSDDAHITAFNISTDITSSTF 267

Query: 294 SVE-------GKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            V+       G         P PG   + N+L A  + + +      +         V  
Sbjct: 268 DVKISLPNVSGVTIIEKITIPTPGRHNILNSLAAISVGVELDFGIKAIKNGFNSFKGVKR 327

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPI 401
           RF  V   ++   +  DYAH    ++  L   + I     G++I +F             
Sbjct: 328 RFTKVAEYNQ-ASVIDDYAHHPEEIKATLSTAKNIANKQHGKVIAIFQPHRYSRMQHLFD 386

Query: 402 MGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRT 451
                 D AD+  +TD     E P          + I     H    F+ K +  +++  
Sbjct: 387 DFMRCFDDADLLYITDVYAAGESPIEGISGQSLIDNIIKLKYHNQANFLAKLD--DSLEV 444

Query: 452 AIEMLNKQDVLVVAGKGH 469
            +   +  D++++ G G+
Sbjct: 445 IMNKASPGDMIIMMGAGN 462


>gi|262202909|ref|YP_003274117.1| UDP-N-acetylmuramate/alanine ligase [Gordonia bronchialis DSM
           43247]
 gi|262086256|gb|ACY22224.1| UDP-N-acetylmuramate/alanine ligase [Gordonia bronchialis DSM
           43247]
          Length = 529

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 103/459 (22%), Positives = 151/459 (32%), Gaps = 77/459 (16%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           GH   P A+ Q   G   IV + A         I    P LV   +R    L   R+  +
Sbjct: 65  GHD--PSALDQIPGGPSVIVTTHA--------AIPKTNPELVAARSRGIPILLRPRVLAE 114

Query: 113 HPE--NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIY 169
                  L + GT GK+S  S      Q  G    F IG     S               
Sbjct: 115 LMAGHRTLLIAGTHGKTSTTSMAVVALQHCGQDPSFAIGGELNESGTN------------ 162

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                ++    GV     + S   L ++            TN+  DH+D+  T + Y  A
Sbjct: 163 -----AHHGHDGVFVAEADESDGSLLEY-----TPDVVVVTNIDVDHLDFFGTIERYV-A 211

Query: 230 KMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGCRVLSVGYQGKF--------- 276
               F + +      ++  DD         V  R  + G  VL  G              
Sbjct: 212 VFDDFADRIVDGGTLVVCLDDPGAAALGGRVAARLGDRGVAVLGYGEGVHAGLAPGVHHV 271

Query: 277 IHLKKVCAIHNKQQVTISV------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            HL    A     Q  +        E  +F     LPG+    N + A   C  +G D A
Sbjct: 272 AHLLSWSASATGGQARVRFTAPLVDEPSEFTVGLTLPGKHMSLNGIGAIIGCARLGADLA 331

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI----------- 379
            V+  +     V  RFEF G    G  +  DYAH    +  +L   R +           
Sbjct: 332 GVISGIGAFGGVHRRFEFRGRCG-GVDVIDDYAHHPTEVAAVLTAARDMVTARTDGPATG 390

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIH 434
            +GR+I VF         +       ALD AD A++ D     E P      +I A+ +H
Sbjct: 391 RAGRVIAVFQPHLYSRTMEFAGEFATALDHADAAVIADVYGAREQPIPGVSGRIIADRMH 450

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
               F    +R+ A     ++    D+++  G G  T+ 
Sbjct: 451 IPAQFAPDLSRLAA--QVAQITRPGDIVLTLGAGDITMQ 487


>gi|238917838|ref|YP_002931355.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
 gi|259509770|sp|C4Z4L9|MURC_EUBE2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238873198|gb|ACR72908.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
          Length = 459

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 144/410 (35%), Gaps = 39/410 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP---ENILAVTGTSGKSSV 129
           +++   L  ++A I  + P            L  + L G+     +N + + GT GK++ 
Sbjct: 66  ITNDIDLVVYTAAIHPDNPEFKAAKEAGLPMLTRAELLGQIMTVYKNAINIAGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S V +I   + +          I +    N        ++A+A  Y +S    + ++  
Sbjct: 126 TSMVSEILLAASMDPTI--SVGGILNSIGGNTRVGGDNYFVAEACEYTNSFLSFNPTMN- 182

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  DH+D+ +      ++  +LF E LP +   II  D
Sbjct: 183 ------------------IILNVKEDHLDFFKDIDDIRHS-FKLFTEKLPSDGTLIINTD 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS--VEGKDFD-FLFP 305
               +       +  C V++ G    K ++     A     + T S  + G+  D     
Sbjct: 224 IDNYEYFY---QDTDCEVITFGSDPAKSMYSASDIAYDELGRCTYSLLINGEKADTITLG 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   VYN+L A      + +D   +   L        RFE  GT   G  +  DYAH 
Sbjct: 281 VPGLHNVYNSLAAIAATRKLSVDMEHIKAGLSNFKGTNRRFEKKGT-FNGVTVIDDYAHH 339

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-D 424
            + +   L +       R+ VVF                 AL  AD  ++       E D
Sbjct: 340 PDEIRATLSSAAHYPHNRVWVVFQPHTYSRTKLLFNEFADALSHADKVVLAKIYAARETD 399

Query: 425 PEKI-RAEIIHGIPGFIEKG---NRIEAI-RTAIEMLNKQDVLVVAGKGH 469
              I  A++   I    ++    +  E I +  ++     D+L+  G G 
Sbjct: 400 TLGISSADLCEKIKSLGKECVYIDNFEDIEKYLLKNCINGDLLITMGAGD 449


>gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
 gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
          Length = 842

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/484 (18%), Positives = 167/484 (34%), Gaps = 52/484 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +  ++    +      I+ + +DSR +      +F A+   + DG  +IP   ++G 
Sbjct: 5   IETIAERIGARRVGDTPATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYSRGV 64

Query: 69  EAIVVSSA---------------YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
              VVS                     D  +++      LVV N  K L   A +   + 
Sbjct: 65  RNFVVSKETYKAIENGQLIIDDSIQRDDAQSSLIPQLNFLVVANPLKALQKLAEQHREQF 124

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  ++    
Sbjct: 125 QIPVIGITGSNGKTIVKEWLHQLLS--------PERVIVRSPRSYNSQIGVPLSVWQMNE 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S L+           S  G  +   + IK   G  TN+G  H +   + Q     K+ L
Sbjct: 177 QSELAIFEA-----GISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTL 231

Query: 234 FEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F+         I   DD + S  V K   +A     S     + + + KV    +   ++
Sbjct: 232 FKNC----DVVIYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVIS 287

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 D  F+ P   +  + N+L     C+ + + +  + E +  L  V  R E     
Sbjct: 288 YRYLEMDNTFMLPFIDDASIENSLNCLAACLYLMLPAEKITERMTTLEPVAMRLEVKEGK 347

Query: 353 SRGGRIYVDYAHTSNSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +    I   Y     SL++ L     R+ ++G    +            P + +    L 
Sbjct: 348 NGCLLINDSYNSDLASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQL- 406

Query: 411 DIAIVTDDNPRS-EDPEKIRAEIIHGIPGF-IEKG--NRIEAIRTAIEMLN---KQDVLV 463
                   N R  E    +  EI      F IEK      EA+  AI       + ++++
Sbjct: 407 -------INSRGIERIIGVGNEIASCAARFDIEKAFYPNTEALLRAISRGELRLENEIIL 459

Query: 464 VAGK 467
           + G 
Sbjct: 460 IKGA 463


>gi|288575843|ref|ZP_05977704.2| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
 gi|288566858|gb|EFC88418.1| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
          Length = 469

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK----- 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V+ K     
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGSEQA 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSR 354
            F+ +  +PG   V NAL A G+ + +G     +   L     V  RF+  G     N  
Sbjct: 272 PFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGFEGVGRRFQKYGEIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   DV++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 461

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 140/424 (33%), Gaps = 35/424 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      +L+  + + P     R+   V+ DSR + +G +FVA+ GN+ DGH F+ QA++
Sbjct: 6   MTLGQAADLVGGILVGPDMELPRR---VALDSREVLSGDLFVALRGNRTDGHAFVGQALS 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  ++V    S  +           L V +    L+  AS         ++ +TG+ G
Sbjct: 63  RGARCLLVE--ISKLEEIRPGLGGASCLAVPDPELALAEMASHWLKLVSPVVVGITGSVG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++       I    G      G   + ++    +                   +G  ++
Sbjct: 121 KTTTREV---ILSLLGRRFKVHGSPKSYNTLIGLSATVMG------------MDRGCDNL 165

Query: 186 SVE--ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +E   SS G     +          T +   H++  +  Q    AK+ + E    +   
Sbjct: 166 VLEYGTSSFGEISKLVSYFPPDEMVITEVAPAHLERLRDVQGVLRAKLEILES---QRGR 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKD 299
            + Y  D               + + VG +   + +     +           +    + 
Sbjct: 223 FLSYNADNDLLWGAVTGGGLTVQRMGVGVRRGDVRISDRRIVWGDDGPRLNFNLHHGDRQ 282

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L      Y   ++  + +  G++  L  E       V GR   + +   G  + 
Sbjct: 283 LEVSSGLWPLHGAYPLALSWVMALRFGVE-DLFPEVAYGFKPVKGRGRAIRSREGGWLMD 341

Query: 360 VDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAI 414
             Y     S+   + +   +  G   R   V G   +  +       +I   L+     I
Sbjct: 342 ESYNANPTSMFGAIDSTLELARGGSMRPQAVLGGMLEMGEDSSLWHRRIVDRLNGFQRVI 401

Query: 415 VTDD 418
           +  D
Sbjct: 402 LVGD 405


>gi|254454584|ref|ZP_05068021.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
 gi|198268990|gb|EDY93260.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
          Length = 471

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 147/412 (35%), Gaps = 43/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IV+SSA    +          + VV        L          ++ +AV GT GK+
Sbjct: 77  AEVIVISSAIKPGNPELDAARQRGLPVVRRAEMLAELMRM-------KSNIAVAGTHGKT 129

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  + +  G  +  +     I ++  + R+     +                  V
Sbjct: 130 TTTTMVAALLEE-GKFNPTVVNGGIIHAYGSNARVGDGEWM-----------------VV 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA       +RL          TN+  +H+++  T +   +A    F   +P    A+  
Sbjct: 172 EADESDGTFNRLPAT---IAIVTNIDPEHMEHWGTIEN-LHAGFYDFVSNIPFYGLAVCC 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK---DFDFL 303
            DD+  + ++ +  +   RV++ G+     +    +          + ++ +     D  
Sbjct: 228 TDDSDVQTLVGKITDR--RVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEGLTIVDCA 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+ +  +   L     V  RF  VG    G  I  DY 
Sbjct: 286 LPMPGDHNVSNALSAIAVARYLGMKTEEIRTALTAFKGVGRRFTRVG-EVDGVTIIDDYG 344

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +  +LK  R  + GRII V                    + AD+  +T+     E
Sbjct: 345 HHPTEITAVLKAARQASEGRIIAVHQPHRYTRLHHHFADFCACFNDADVVAITEVFAAGE 404

Query: 424 D--PEKIRAEIIHGIPGFIEKGNRI---EA--IRTAIEMLNKQDVLVVAGKG 468
           D      R +++ G+     +  R    EA  +    E     D++V  G G
Sbjct: 405 DVIEGATRDDLVAGLIRAGHRDARAITNEADLVALVKEQAKPGDMVVCLGAG 456


>gi|311104002|ref|YP_003976855.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
 gi|310758691|gb|ADP14140.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
          Length = 468

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 91/423 (21%), Positives = 143/423 (33%), Gaps = 52/423 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA AIV S+A +  +          I VV      L+       G      +AV GT GK
Sbjct: 64  GAAAIVTSTAVAGDNPEVIAARAARIPVVPRALM-LAELMRLKRG------IAVAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +          + PT  I                L  A +        ++ 
Sbjct: 117 TTTTSLVASVLAA-----GDLDPTFVIGGR-------------LNSAGANARLGQGDYIV 158

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA     D   L+ +  +    TN+  DH+D +    A   +    F + LP    A++
Sbjct: 159 VEADES--DASFLNLL-PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKD-----F 300
            +DDA  +E+M         + + G   +      +V     + +  +    +D      
Sbjct: 216 CSDDANVREIMPFVSRP---ITTYGLNEEAQVRAYEVQPAGTRMRFNVQRTHRDTLLPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-----FVGTNSRG 355
                LPG   V NAL A  +   +G+    + E L   H V  RF       V  N  G
Sbjct: 273 QVELNLPGLHNVRNALAAIAVATELGVADEAICEALSSFHGVGRRFTQTGDFPVPANHGG 332

Query: 356 G--RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADI 412
           G   +  DY H    +   L   R     R IV+ F                  L  AD 
Sbjct: 333 GTFTVIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGTADA 392

Query: 413 AIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++T+     E P          RA  + G    +   +  E  +  ++ +   DV++V 
Sbjct: 393 VLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDFVRDGDVVIVM 452

Query: 466 GKG 468
           G G
Sbjct: 453 GAG 455


>gi|325198902|gb|ADY94358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis G2136]
          Length = 436

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 140/394 (35%), Gaps = 34/394 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ + +DSR I+AG +F A+ G + D H F+                 +        R
Sbjct: 6   KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 53

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +       L VD+T   L + A          +  +TG+ GK++V   +  + +R    
Sbjct: 54  EDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRR---R 110

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLDGI 202
                  +T  +F           I L   L  L+ +     + +  +  G         
Sbjct: 111 FGDNAVLATAGNFNNH--------IGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIA 162

Query: 203 KLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           K  A    N  R H+            AK  +++ L   +  A+I  +DA          
Sbjct: 163 KPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGL-CSDGMALIPQEDANMAVFKTATL 221

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N   R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L
Sbjct: 222 NLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAAAAAAL 279

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +A G+    V E L+    + GR   V +  +G  +  D Y    +S++  +  +  + 
Sbjct: 280 SLAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIKGATLIDDTYNANPDSMKAAVDVLARMP 338

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           + RI V+   G   +     +  ++     D  I
Sbjct: 339 APRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 372


>gi|225849381|ref|YP_002729545.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644549|gb|ACN99599.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 454

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 152/426 (35%), Gaps = 57/426 (13%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTR--------KFLSLFASRLYG 111
             GA+  +  S  +++D     +S+ ++ + P L              + L+      YG
Sbjct: 49  ELGAKVYIGHSEDNVKDVDVVVYSSAVKPDNPELKKARELGIPTIPRGEMLAELMRFKYG 108

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A+ G+ GK++  S V  +  ++G       PT  I            S   L 
Sbjct: 109 ------IAIAGSHGKTTTTSMVGTVLGKTGFD-----PTVVIGG----KLEAYGSNAKLG 153

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +        G   V+    S G        +     S  N+  +H+ +++  +   NA +
Sbjct: 154 R--------GEFLVAESDESDGSFLK----LTPTIVSINNIDLEHLGFYKDLEDIKNAFV 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
             F   +P     +   DD   K ++ R      +++  G  +   I    +  ++ + +
Sbjct: 202 E-FANKVPFYGFVVANIDDENVKSIIPRIER---KIIKFGLSKDADIRGYDLKLVNGRYK 257

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I+  G+       +PG   VYNAL    +C  +G+   ++ E LE       RFE   
Sbjct: 258 FKINDFGE---IHLSVPGIHNVYNALATISICNELGVPFCVIKESLENFKNAKRRFEI-- 312

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDL 409
             S G  +  DYAH    ++  L   R +     I+ VF                 + D+
Sbjct: 313 KYSDGILVIDDYAHHPTEIKATLSAARDMYGQNRIISVFQPHRYSRVYSLFDEFVESFDI 372

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            DI I+TD     E+P      + +  +I           +  EA      ++   DV++
Sbjct: 373 PDIVIITDIYSAGENPIEGVSGQLLADKIRQRRNNVFYVKDVNEAESLLKSIIKNGDVVL 432

Query: 464 VAGKGH 469
             G G+
Sbjct: 433 TMGAGN 438


>gi|152967147|ref|YP_001362931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
 gi|151361664|gb|ABS04667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
          Length = 487

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 143/474 (30%), Gaps = 43/474 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L   +  EL               +   V  DSR    G +FVA+ G + DG      A+
Sbjct: 4   LTAAEVAELTG--GRLAAGTASTPVTGPVVVDSRAAGPGSLFVALPGERVDGADHAAGAV 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-----ILA 119
           A GA  ++      L        +   ++VV++    L   A  +  +         ++ 
Sbjct: 62  AAGASLVLAEREVEL-------PAGAALVVVEDGVTALGRLARGVLERLRSTGSGPLVVG 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+ GK++    + ++   +G      G  +                + L         
Sbjct: 115 VTGSQGKTTTKDLLARVLAPAGPVVAPAGSFNNEIGAPLTVLRADRGTVTL--------- 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V + A   G         +   G    +G  H     + +    AK  L E L P
Sbjct: 166 ----VVEMGARGLGHIAALCAIARPDVGVELVVGAAHAGEFGSLETTARAKGELVEAL-P 220

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEG 297
            E  A++ ADD     V   A     RVL+ G         L        + + T+   G
Sbjct: 221 AEGLAVLNADDD---RVAAMATRTRARVLTFGRGAHADVRALDVELDALARPRFTLQHGG 277

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L GE QV NAL AA + +  G     V   L     +      V     G  
Sbjct: 278 GRARVQLQLHGEHQVTNALAAAAVALGTGRPLEEVAASLSAATELSPGRMQVVERPDGVT 337

Query: 358 IYVD-YAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMG----KIALDLA 410
           +  D Y    +S+   LK +  +     R   V G   +     R         +     
Sbjct: 338 VVHDAYNANPDSMRAALKALVGMAGAGRRTWAVLGEMLELGPASREEHDLLGRTVVRLDV 397

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  +V     R      +               +  +A+      L   DV++V
Sbjct: 398 DQLLVVGAGARPVYTGAVMEG--SWGEEAAFATDVDDALEFLRARLRPGDVVLV 449


>gi|89067826|ref|ZP_01155270.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
 gi|89046424|gb|EAR52480.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
          Length = 464

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 147/413 (35%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +V+SSA    +          + VV        L          ++ +AV GT GK
Sbjct: 69  GAEVVVISSAIKPGNPELDEARRRGLPVVRRAEMLAELMRM-------KSNIAVAGTHGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V  +    G     +     I ++  + R+     +                  
Sbjct: 122 TTTTTMVASLLDH-GRFDPTVINGGIIHAYGSNARVGEGEWM-----------------V 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA       +RL          TN+  +H+++  T++A        F   +P    A+ 
Sbjct: 164 VEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGTEEALKKG-FYDFVSNIPFYGLAVC 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK---DFDF 302
             D    + ++ R  +   RV++ G+     +    +       +  I+++G+     D 
Sbjct: 220 CTDHPDVQGLVSRITDR--RVVTFGFNAQADVRAINLTYDKGVAKFDIALQGEGTVIEDC 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I  DY
Sbjct: 278 SLPMPGDHNVSNALSAVAVARHLGMKRDEIREALAAFGGVNRRFTRVGEVG-GVAIIDDY 336

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  T GR+I V                    + AD+  + +     
Sbjct: 337 GHHPVEIAAVLKAARQATEGRVIAVHQPHRYSRLSSLFDQFCNCFNEADVVAIGEVYAAG 396

Query: 423 ED--PEKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
           E+  P   R +++ G+     +  R     + +   + E     D++V  G G
Sbjct: 397 EEPIPGASRDDLVAGLIRAGHRHARAVTDEDDLERLVREQARPGDMVVCLGAG 449


>gi|320450516|ref|YP_004202612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
 gi|320150685|gb|ADW22063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
          Length = 428

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 156/456 (34%), Gaps = 62/456 (13%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           PE + + +   +    + + ++  DSR    G +FVA+ G +  G  ++ +A A+GA  +
Sbjct: 11  PEWVARATGGRLHPGGKPVRDLHWDSRETTPGSLFVALPGQRVHGREYVDEARAKGAHLV 70

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +                    + V +T + L      L    P  ++AV G+SGK++   
Sbjct: 71  LSDRPGPAT------------VEVVDTHQALLRLGRALRELFPGQVVAVGGSSGKTTTKE 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + Q                    F         +P      L          V +    
Sbjct: 119 ALAQGL-----------------GFPAPPGNQNTAPPLARFLLRLDPQAPGCVVELGVDR 161

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G     +   +      T LG +H++   + +     +  L   L   ++   + A + 
Sbjct: 162 VGEMAELMGLARPHLAVLTALGEEHLEAFGSLEGVVEEEAGL---LSAPQALVSLQAAEV 218

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             +  + R         + G+       + +  + ++ +          +   P PG   
Sbjct: 219 LERFGLGRGLP------TYGFGEATFRGENLRLLLHESRFRY----GALEVHIPYPGMGP 268

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
              AL A G+   +G++   V E L  L + PGR E      + G ++++ A+ +N L +
Sbjct: 269 ALAALAALGVAEMLGLNPKEVAERLAHLVLPPGRMER---REKDGVVFLNDAYNANPLSV 325

Query: 372 ILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI----AIVTDDNPRSEDPE 426
                   +  GR  VV G   +  +    +  ++A + A +      +    P ++   
Sbjct: 326 KAGLAWLALQPGRKWVVLGEMRELGEEALRLHLEVAQEAARLGLKPLYLG---PYAKAQA 382

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +  E   G+          EA+    E +   D++
Sbjct: 383 SLGGEAAEGL---------EEAVGWLKERVQPGDLV 409


>gi|295394735|ref|ZP_06804950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972331|gb|EFG48191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 481

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 136/451 (30%), Gaps = 40/451 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSR +  G IFVA  G   +G  F P            ++    +          P
Sbjct: 29  GVETDSREVSPGDIFVARRGETTNGIEFAPS------AIAAGAAIVIAEAVPTVGDDTLP 82

Query: 92  ILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             VV +    L   AS      +    ++A+TG+SGK+SV   V  +    G + +    
Sbjct: 83  SCVVTDATVALGKLASASVEALRETMTVIAITGSSGKTSVKDLVSVLLAGEGETVYPPNS 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                 +L              + + A S G   +    I+      
Sbjct: 143 YNNEVGVPLTALRAGEETRFL-------------VLEMGARSIGNLAYLTSLIRPDIAVE 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVL 268
            N+G  H     +      AK  L E L  +   A++ ADD   +++    A        
Sbjct: 190 LNVGAAHSGVFGSIDNTARAKAELVESL-QEPGWAVLNADDPRVRDMQNVLAQGVNTMWF 248

Query: 269 SVGYQGK----FIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCI 323
           S G   +                +    + + G++       L G   V NAL AA +  
Sbjct: 249 SEGEPTRPDTTVWASDVTTGATGRSSFVLHLPGEEPAQVELSLLGRHHVSNALAAATVAH 308

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382
             G+ +  ++  L            +  +  G  +  D Y    +S+   L  +  +  G
Sbjct: 309 LCGVTARSIVTTLATAGAASRWRMELVDSPNGVTVINDAYNANPDSMRAALITLAEMGRG 368

Query: 383 RI-------IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR-AEIIH 434
                    + V G   +          KI   +  + I        E    I  A  + 
Sbjct: 369 DDENPPRRTVAVLGEMLELGDTSIEEHDKIGSLVVRLNISRTI-AVGEGARPIYQAANLE 427

Query: 435 G--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           G          N  EA       L   D+++
Sbjct: 428 GSWGNEAAWVENISEARDLLQSELQPGDIVL 458


>gi|255066169|ref|ZP_05318024.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
 gi|255049714|gb|EET45178.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
          Length = 469

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK----- 298
            +  D  + + ++ +         + G      I+   + ++  + + T+ V+ K     
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDAADIYATDIESVGAQMKFTVHVQMKGHEQA 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     +   L     V  RF+  G     N  
Sbjct: 272 PFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGFEGVGRRFQKYGDMKLPNGG 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|163784502|ref|ZP_02179369.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880227|gb|EDP73864.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 412

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 149/428 (34%), Gaps = 48/428 (11%)

Query: 51  GNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           G K     FI  +     GA+ +V SSA    +          I V+    + L+     
Sbjct: 7   GAKV----FIGHSKENVHGADVVVYSSAVKEDNPEIIEAKKLSIPVIPRG-EMLAELMRF 61

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            YG      +A+ G+ GK++  S V  I  ++G     +     + ++  + +L      
Sbjct: 62  KYG------IAIAGSHGKTTTTSMVGSILGKTGYDPTVV-IGGKLEAYGSNAKLGRGD-- 112

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                           +  EA        RL        S  N+  +H+ Y++       
Sbjct: 113 ---------------FLVAEADESDGSFLRLS---PTIVSINNIDLEHVGYYRNLDDIKK 154

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A ++ F   +P      +  DD   K+++ +      +V+  G + K   +         
Sbjct: 155 AFIK-FANKVPFYGAVALNIDDKNVKDILPKIEK---KVIKFGIENKDADINAYELELVN 210

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                 V          +PG+  VYNAL A  +   +GI   +V E LE       RFE 
Sbjct: 211 GTYRFKVNDL-GQIHLSVPGKHNVYNALTAVAIADELGIPFCVVKETLENFKNASRRFEI 269

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                   ++  DYAH  + L+  +   +      RII VF                 + 
Sbjct: 270 --KYDGNIKVIDDYAHHPSELKATICAAKDKYPDRRIITVFQPHRYTRLHSLFNQFAESF 327

Query: 408 DLADIAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRIEAIRTA----IEMLNKQDV 461
             +D  I+TD     E P E I AE +   I    ++    + +        EM+ + DV
Sbjct: 328 GNSDTVIITDIYSAGEKPIENISAEKLTEKIKEKGKEVYFAKYLSDVENMLKEMIKEGDV 387

Query: 462 LVVAGKGH 469
           +++ G G+
Sbjct: 388 VLILGAGN 395


>gi|160937437|ref|ZP_02084798.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439506|gb|EDP17256.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
          Length = 472

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 155/431 (35%), Gaps = 54/431 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTS 124
           A  I      S+  ++A I  + P       +    L  + L G   ++ +  +A++GT 
Sbjct: 74  AANIEREPGISVVVYTAAIHEDNPEFRAARDQGLPMLSRAELLGELMRNYKEAIAISGTH 133

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I   +G     I     +     + R+  P  +++ +A  Y +S    +
Sbjct: 134 GKTTTTSMLTDIL-LAGDLDPTISVGGILKDIGGNIRVGGPD-LFVTEACEYTNSFLSFY 191

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E                      N+  DH+D+ +  +   ++  RLF E LP +   
Sbjct: 192 PTME-------------------VILNVEEDHLDFFKDIEDIRHS-FRLFAEKLPAKGLL 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDF-D 301
           ++ +     +E+ +      CRV++ G      +           +    + V+G+    
Sbjct: 232 VVNSGIEKVEEITR---GLRCRVVTFGKDLSSTYTARNITYDGFARPSYDLVVQGETVTR 288

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + GE  VYN+L A  + + +G+    ++  L +      RFE  G  + G  +  D
Sbjct: 289 ITLGVTGEHNVYNSLAAIAIALELGVGFDAIMSGLGRFTGTDRRFEKKGEVA-GVTVIDD 347

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++  L   R     ++  VF                 AL  AD  ++ D    
Sbjct: 348 YAHHPQEIKATLAAARNYPHRKLWCVFQPHTYTRTRAFLDQFAEALSAADEVVLADIYAA 407

Query: 422 SE---------DPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E         D      ++    H IP F E           +E     D+L+  G G 
Sbjct: 408 RETDTLGVSSRDVADRIEKLGTKAHYIPSFDEIE------TFILENCMNGDLLITMGAGD 461

Query: 470 ETVHIVTNGEK 480
               IV  GEK
Sbjct: 462 ----IVKVGEK 468


>gi|83858914|ref|ZP_00952436.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853737|gb|EAP91589.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 467

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 152/439 (34%), Gaps = 58/439 (13%)

Query: 50  VGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            G        I  A     GA A+VVSSA    +            VV    +   + A 
Sbjct: 54  KGAVVH----IGHAAENVEGAGALVVSSAVKKDNPELVAARAKRTPVV----RRAEMLAE 105

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +  KH    +AV GT GK++  S V  +   +G     I     IS++  + ++     
Sbjct: 106 LMRLKH---AVAVAGTHGKTTTTSLVACLMDAAGFDPTVING-GIISAYGSNAKIGEGEW 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           +                  VEA        +L G     G  TN+  +H++++ +  A  
Sbjct: 162 M-----------------VVEADESDGSFLKLRG---SVGIITNIDPEHMEHYGSFDALR 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIH 286
           +A  + F E LP    A++  D    + +  R  +   RV++ G+     + L  +    
Sbjct: 202 DAFAQ-FVENLPFYGFAVLCIDHPEVQALAARIEDR--RVITYGFSPQADVRLSNLVMDE 258

Query: 287 NKQQVTISVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                 ++ + +  +         P+ GE  V NA  A  +  A+G         L    
Sbjct: 259 TGGHFDLTFQPRGIEPVTWAGMSLPMMGEHNVLNAAGALAVVQALGGGEEEARTALSGFT 318

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
            V  RF   G  + G  +  DY H    +  +LK  R  + +GR+  V            
Sbjct: 319 GVKRRFTITG-QAHGVTVVDDYGHHPVEITAVLKAARQRVGAGRVHAVVQPHRYSRLHDL 377

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGI-------PGFIEKGNRIEAIR 450
                   + AD   VT      E P +  ++  ++ G+       P    +    + ++
Sbjct: 378 FEDFCTCFNDADSVWVTPVYAAGEAPIEGASQDSLVAGLQRHGHRNPNATTRETLPDDLK 437

Query: 451 TAIEMLNKQDVLVVAGKGH 469
           + +      D++V  G G 
Sbjct: 438 SVM---QPGDLIVCLGAGD 453


>gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010]
 gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010]
          Length = 826

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 163/392 (41%), Gaps = 35/392 (8%)

Query: 27  ERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           E  I+ + +DSR +      +F A+   + DG+ +IP+  ++G    VV +     D   
Sbjct: 21  ETNISFLLTDSRSLCFPEETLFFALKSERNDGYHYIPELYSRGVRNFVVEAIPENWDM-- 78

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +   +  L V  T + L   A+    +    ++ +TG++GK+ V  ++ Q+        
Sbjct: 79  -LYPQSNFLEVSKTIEALQRLATCHRAEFHVPVIGITGSNGKTVVKEWLYQLLS------ 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                  T S  + ++++  P  ++L   L+  +  GV    +  S  G  +   + I+ 
Sbjct: 132 --PNKVVTRSPRSYNSQIGVPLSVWL---LNEQTEVGVFEAGI--SERGEMKALREIIQP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FT+LG  H +   + +     K+ LF      ++ AI+Y  D   + V++      
Sbjct: 185 TIGVFTSLGEAHQENFASLEEKCMEKLCLFR-----DTNAIVYPLDE--ELVVRCIKTLN 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVAA 319
            +   +G+  K  +         K ++T ++     +GK+  +  P   +  V N++ +A
Sbjct: 238 YKNTILGWSKKDSNATLFVKEIKKAELTTTITYVWQQGKEASYTIPFIDDASVENSITSA 297

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR- 377
            +C+ +G++   + E + +L  V  R E V     G  +  D Y    NSL++ L  +  
Sbjct: 298 IICLHLGVEVKTLAERMPQLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIALDFMNR 356

Query: 378 --TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                  +  ++        + ++ +  ++A 
Sbjct: 357 RPDHKGRKRTLILSDIFQSGEDEKTLYQRVAF 388


>gi|298253385|ref|ZP_06977177.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
 gi|297532780|gb|EFH71666.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
          Length = 596

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 179/553 (32%), Gaps = 91/553 (16%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
            FP    +      + D+R I  G +   I GN +    ++  A  +G  A V   +Y+ 
Sbjct: 58  YFPNIDADECFTNATYDTRDITLGTLLF-IKGNFK--SEYLLDADNKGLAAYVAEQSYAQ 114

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASFVQQIC 137
              +         L+V + +K +S+ A+  +G   E +  +  T  K     A F   I 
Sbjct: 115 YTKAVG-------LIVTDAKKAMSVLAAAFFGNPQEKLTIIGITGTKGKTTTAYFTHAIL 167

Query: 138 QRSGLSSFQIGP---TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                    +              ++ LTTP      K +      G+ ++ +E SS   
Sbjct: 168 NSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEVSSQAY 227

Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             +R+ G+K    +F N+  DHI    H T + Y   K ++           ++ +D  +
Sbjct: 228 KVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIAN----TKRLVLNSDTDH 283

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-----AIHNKQQVTISVEGKDFDFLFPLP 307
           +  +++ A      V +     K       C        +   +       D D+   L 
Sbjct: 284 ADLLLQDAERNNVLVTTFARIKKDEIEGAACENNNFDDLDDDCINYCAPANDDDYTELLT 343

Query: 308 GEF------QVYNALVA-----------------------------------------AG 320
            ++         +  +A                                         A 
Sbjct: 344 PDYIAMPVENSESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAA 403

Query: 321 LCIA--IGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           + IA  +GI+    L  L  +  V    R E            VDYAH   S + +L  +
Sbjct: 404 IAIAGELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIAVVDYAHNYISTKSVLDFV 463

Query: 377 RTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
                     I ++ G  GD+   +R  + + A +  +  I T ++  +ED   I  ++ 
Sbjct: 464 EERYGKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQ 523

Query: 434 HGIPGFIE----KGNRIEAIRTAIEML----NKQ---DVLVVAGKGHETVHIVTNGEKKM 482
             +           +R EAI  A         K    ++L+  GKG E            
Sbjct: 524 SYVTNTNVSSRIIIDRAEAIEYAYNDAANSEQKNGRLNILLAIGKGDERWIKNKRKHVPY 583

Query: 483 SVDCDIIREILGL 495
             D  +I+ + GL
Sbjct: 584 EGDSFVIKRLFGL 596


>gi|27381712|ref|NP_773241.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium japonicum
           USDA 110]
 gi|44888203|sp|Q89FU8|MURC_BRAJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27354881|dbj|BAC51866.1| UDP-N-acetylmuramate-alanine ligase [Bradyrhizobium japonicum USDA
           110]
          Length = 467

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 145/420 (34%), Gaps = 51/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +VVS+A    +          I VV        L   +         +A+ GT GK
Sbjct: 66  GAEVVVVSTAIKRDNPELMAARERRIPVVRRAEMLAELMRLKSC-------VAIAGTHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V  +    GL    I     I+++  + RL     + +    S           
Sbjct: 119 TTTTTMVATLLDAGGLDPTVING-GIINAYGSNARLGAGDWMVVEADESD---------- 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+  +H+D+ +T +A  +A  R F E LP    A++
Sbjct: 168 ----------GTFLKLPTDVAIVTNVDPEHLDHFKTFEAVQDA-FRHFVENLPFYGFAVM 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF----- 300
             D    + ++ +  +   R+++ G      + L  +  +    +  ++   +       
Sbjct: 217 CIDHPVVQSLVGKIEDR--RIITYGENPQADVRLVDLTPMGGGSKFKVAFRDRKTGAVHE 274

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D + P+PG     NA  A  +   +G+    +   +     V  RF   G    G  +
Sbjct: 275 IPDLMLPMPGRHNASNATAAIAVARELGVSDEAIRSAIAGFGGVKRRFTKTGEW-NGVTV 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    +  +LK  R  T+G+I+ V                    + AD  IV D 
Sbjct: 334 IDDYGHHPVEIAAVLKAARESTNGKIVAVVQPHRYTRLQSLFEEFCTCFNDADAVIVADV 393

Query: 419 NPRSEDP-EKIRAEIIHGIPGFIEKGNRI-----EAIRTA---IEMLNKQDVLVVAGKGH 469
               E P + I  +  H + G    G+R       A   A     +    D++V  G G+
Sbjct: 394 YAAGEAPIDGIDRD--HFVAGLRAHGHREVVPLPAAPELAGIVKGLAKSGDLVVCLGAGN 451


>gi|126643213|ref|YP_001086197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 397

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 119/355 (33%), Gaps = 31/355 (8%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
            A G +  +V      +            LVV +TR  L    +    ++ +  ++A+TG
Sbjct: 2   AANGCQVAIVERPIDAE---------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTG 52

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++    +  I  R   +    G  +                      L        
Sbjct: 53  SSGKTTTKEMLGSILSRLAPTLITRGNLNNDLGVPMM-------------LLELRKEHQY 99

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+  G   +    ++       N+G  H+     +     AK  ++  +LP+  
Sbjct: 100 AVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQ-G 158

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AII   D ++ E+ + A +   +++S G  G  +   ++  +       +         
Sbjct: 159 VAIIPQQDDFTAEIREAAKSH--QIMSFG-AGGDVFATEIELLPQSANFQLHTPQGSSFV 215

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  GE  V NA  A    +A+G+    +++ L +     GR  F+        I   Y
Sbjct: 216 RLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLAQAQGAKGRLNFIQKAPHLF-IDDTY 274

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAI 414
                S+    + +      +++V+   G   D        +   +A    D  +
Sbjct: 275 NANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 329


>gi|115350513|ref|YP_772352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria AMMD]
 gi|115280501|gb|ABI86018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia ambifaria AMMD]
          Length = 468

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 146/406 (35%), Gaps = 31/406 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +     VS+DSR +  G +FVA+ G++ D H F+            V++  +     A 
Sbjct: 22  PDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGD----------VAARGAAAALVAH 71

Query: 86  IRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I   +  +
Sbjct: 72  VPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASIFAAAVGA 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             ++     +++                  L    +  V  + +  +  G  +       
Sbjct: 132 DARLATAGNLNN----------DIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAA 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N  R+H ++  T +A       +   L P +  A+  ADDAY+      A   
Sbjct: 182 PTVALVNNAQREHQEFMATVEAVALEHAAVIHALTP-DGVAVFPADDAYASIWRVAATGN 240

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                ++ + G+     +V    +  ++ I              GE    NAL AA   +
Sbjct: 241 PILDFAL-HDGERQVEAQVTGRLHGGELAIDTPSGAVTVRLRALGEHNARNALAAAAAAL 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTI 379
           A GI+ A + + LE    V GR +    +     G  +  D Y    +S+   +  +   
Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359

Query: 380 TSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
            + R++V+   G   D+G    R I         D      D  R 
Sbjct: 360 PAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|332521388|ref|ZP_08397844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
 gi|332043116|gb|EGI79314.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
          Length = 400

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 129/361 (35%), Gaps = 30/361 (8%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+ G+  +G+ F  +A+ +GA+ +++              +++  ++V+N  + L  
Sbjct: 1   MFFALKGDNFNGNTFSTEALKKGAKYVIIDE--------LEYNTSSQTILVENVLETLQQ 52

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A+         I+ +TG++GK++    +  +  +      +   T+T  +      +  
Sbjct: 53  LATYHREYLNIPIIGLTGSNGKTTTKELINTVLSK------KYNTTATKGNLNNHIGVPL 106

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                    LS      +  V + A+     +   +  K   G  TN G+ H++   + Q
Sbjct: 107 -------TLLSMTKDTEIGIVEMGANHLKEIEFLSNIAKPDFGYITNFGKAHLEGFGSIQ 159

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              N K  L+  L+  +      ADD    E +   +      L  G+  +  +   +  
Sbjct: 160 GVINGKSELYNYLITYKKHIFFNADDTIQNEKLSNYN------LKSGFSNQTQNQLNINF 213

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +     VT+  +  D      L G++   N   A  +     +  + +   +E       
Sbjct: 214 LEANPFVTLKFQ--DQIITSQLIGKYNFTNISAAITIGSYFNVKFSDIKAAIENYAPTNN 271

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + +  NS    I   Y     S++  L+N   + +   I   G   +     +     
Sbjct: 272 RSQIINKNSNKI-ILDAYNANPTSMKAALENFSNLNATYKIAFLGDMFELGDEAQAEHQN 330

Query: 405 I 405
           I
Sbjct: 331 I 331


>gi|118444708|ref|YP_877107.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium novyi NT]
 gi|166222976|sp|A0PXK5|MURC_CLONN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118135164|gb|ABK62208.1| UDP-N-acetylmuramate--alanine ligase [Clostridium novyi NT]
          Length = 458

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 147/420 (35%), Gaps = 41/420 (9%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           A+GAE  +  +  +L+D     ++A I  + P LV        ++  +   G   +    
Sbjct: 53  AKGAEIYIGHNGNNLKDVDLVVYTAAIPDSNPELVKARECNIQTMDRAEFLGHVMQGHKY 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A++GT GK++  S    I   S      I     +     + R+   S  ++ +A  Y
Sbjct: 113 NIAISGTHGKTTTTSMFSHI-SLSANLDPTILVGGNLDVINGNVRVG-NSEYFVTEACEY 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +S    +                      G   N+  DH+D+++      N  ++ F +
Sbjct: 171 KASFLKFY-------------------PYIGVILNIEADHLDFYKDINDIQNTFLK-FAK 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+P +   I+ ADD   K  ++ +    C V++ G     +  K +   + +    +   
Sbjct: 211 LIPNDGFLIVNADD---KRCVEVSKQVDCNVITFGINNGDVRAKNIVFNNGRPTFDVYRN 267

Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +  F     +PG   + +AL +    +++ +    ++E L   +    RFE  G    G
Sbjct: 268 EEKLFTLTLNVPGNHNILDALASISSALSLNVPVDSIIEGLSTFNGAHRRFEIKG-KVDG 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH    ++  L   +     R+  VF                 +   AD  ++
Sbjct: 327 ITVVDDYAHHPTEIKAALNAAKNFPHKRVFCVFQPHTYSRTISLFDDFANSFSNADTLVL 386

Query: 416 TDDNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D     E    +        +I           +  + +      L   D+L+  G G 
Sbjct: 387 ADIYAAREKDTGVVSSTMLGDKIRENGVNCKNLHSFEDIVTFLKGELKDGDLLITIGAGD 446


>gi|91776620|ref|YP_546376.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
 gi|122985406|sp|Q1GZ02|MURC_METFK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91710607|gb|ABE50535.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
          Length = 475

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 144/417 (34%), Gaps = 51/417 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V+SSA    +          I ++      L+       G      +A+ GT GK++ 
Sbjct: 67  VVVISSAVKDDNPEVVAARERNIPIIPRALM-LAELMRFRQG------IAIAGTHGKTTT 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I   +G+      PT  I    + +                    G   V+   
Sbjct: 120 TSLIASILAEAGMD-----PTFVIGGRLEASGSNARLGT------------GEYIVAEAD 162

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S     H    +  I    TN+  DH+D +             F + LP    A++  D
Sbjct: 163 ESDASFLH----LTPIISVVTNIDADHMDTYGHDFERLKGAFVEFLQRLPFYGMAVVCID 218

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS-VEG--KDFDFLFP 305
           D   + ++ +      +V+  G+  +       V A + +   T++ + G    FD    
Sbjct: 219 DPNVRAILPQISK---QVMPYGFSEEARIRASNVQAENGRMHFTVTRINGVTTTFDVTLN 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVD 361
           LPG   V NAL A  +   + +    +++ L +   V  RFE  G     +     +  D
Sbjct: 276 LPGRHYVLNALAAIAVASELNVPDGAIIKALAEFKGVGRRFERYGEVPARDGGYFTLVDD 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    +  ++   R    GR +V+ F                  L  AD+ ++T+   
Sbjct: 336 YGHHPAEMNAVIAAARDAFPGRRLVLAFQPHRYTRTRDCFEDFVKVLSSADVVLLTEVYA 395

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKG 468
             E P  I A     +   I    ++E +         ++ ++M    DV++V G G
Sbjct: 396 AGEAP--IVAADGRSLVRAIRVAGKVEPLFVETPQELPQSILDMAQDGDVVIVMGAG 450


>gi|239628388|ref|ZP_04671419.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518534|gb|EEQ58400.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 479

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 91/425 (21%), Positives = 151/425 (35%), Gaps = 54/425 (12%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVA 130
                +  ++A I  + P  +    +    L  + L G   ++ +  +AV+GT GK++  
Sbjct: 87  EPGIDVVVYTAAIHEDNPEFMAVKEKGIPMLSRAELLGEMMRNYKQAVAVSGTHGKTTTT 146

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I   +G     I     +     + R+ +P  +++ +A  Y +S    H ++E  
Sbjct: 147 SMITDIL-LAGNLDPTISVGGILQDIGGNIRVGSPE-LFVTEACEYTNSFLSFHPTME-- 202

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                               N+  DH+D+ +  Q   ++  RLF E LP     +I +  
Sbjct: 203 -----------------VILNIEEDHLDFFKDIQDIRHS-FRLFAEKLPSRGLLVINSGI 244

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDF-DFLFPLP 307
              +E+ K     GCRV++ G      +  K        +    + ++G+        + 
Sbjct: 245 DAVEEITK---GLGCRVVTFGKDSSSTYTAKDITYDGFARPSYDLVIQGEVVNRITLGVT 301

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VYN+L A  + + +G     V+  L K      RFE  G    G  I  DYAH   
Sbjct: 302 GEHNVYNSLAAIAVAMELGAGFDAVMAGLRKFTGTDRRFEKKGEIG-GITIIDDYAHHPQ 360

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
            ++  L   +     ++  VF                  L  AD  I+ D     E    
Sbjct: 361 EIKATLSAAKNYPHRKLWCVFQPHTYTRTKAFLDQFAETLSAADEVILADIYAARETDTL 420

Query: 426 ----EKIRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                 I   I       H IP F +           +E     DVL+  G G     IV
Sbjct: 421 GVSSRDIAQRIERLGTKAHYIPSFDDIE------TFILENCINGDVLITMGAGD----IV 470

Query: 476 TNGEK 480
             GEK
Sbjct: 471 KVGEK 475


>gi|46580907|ref|YP_011715.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601792|ref|YP_966192.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|48428298|sp|P61678|MURC_DESVH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224686|sp|A1VBE9|MURC_DESVV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46450327|gb|AAS96975.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562021|gb|ABM27765.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|311234598|gb|ADP87452.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris RCH1]
          Length = 454

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 150/454 (33%), Gaps = 69/454 (15%)

Query: 51  GNKEDGHLFIPQAIAQ-----GAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTR- 99
           G    G      A+ +     GAE  +   A ++ D         +R + P ++    + 
Sbjct: 29  GYAVHGSDMSDSAVVRRLRKIGAEIFIGHGAGNVSDAEVLVKSTAVRDDNPEVLAAVEKG 88

Query: 100 -------KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                  + L+       G      +A+ GT GK++  S    I   +G       PT  
Sbjct: 89  IPIIPRAEMLAELMRLRTG------IAIAGTHGKTTTTSLTAAIFDVAGKD-----PTVI 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG----IKLIAGS 208
           I                       L++ G      E      +    DG    +  I   
Sbjct: 138 IGG--------------------RLNAYGANARLGEGEYLIAEADESDGSFLCLFPIVNV 177

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++  Q+    A    F   +P     ++  DD   + ++ +      RV+
Sbjct: 178 VTNVDMDHVDFYAGQKEIDEA-FVTFMNKVPFYGANVVCGDDPGVRRLLPQVKR---RVV 233

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G+        +V +       T+ + G    +     PG   + NAL A G+ +  GI
Sbjct: 234 TYGFGKDNALRAEVTSCAETSVFTVFLRGGRLGEVHLGQPGRHNILNALAAIGVALEAGI 293

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                +E L +   V            G  +  DY H    +   L   R++   R +VV
Sbjct: 294 SPEHCIEGLARFGGVGR-RFERRGERDGVTVVDDYGHHPVEIAATLATARSVYPDRRLVV 352

Query: 388 FGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF 439
                 R    + + G+     +  D  ++T+  P SE P      + +   I       
Sbjct: 353 VFQP-HRFSRTQALFGEFCKVFEPVDKLLLTEIYPASEKPIPGVSGQSLAQGIRQVSNTD 411

Query: 440 IEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
           +      + I  A+  +L   DVL+  G G  T 
Sbjct: 412 VTYYQSFDEILAALPGVLRPGDVLLTLGAGSVTT 445


>gi|305680833|ref|ZP_07403640.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659038|gb|EFM48538.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
          Length = 477

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 144/412 (34%), Gaps = 48/412 (11%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSG 141
           A I  + P LV    +    +  S L G+       + + GT GK+S  S      Q +G
Sbjct: 78  AAIPQDNPELVAAREQNIPVIRRSDLLGELMTGSTQVLIAGTHGKTSTTSMAVVAMQAAG 137

Query: 142 LSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRL 199
           +   F IG     +                       + QG  H  V EA        R 
Sbjct: 138 MDPSFAIGGQLNKAGTN--------------------AHQGSGHCFVAEADESDASLLRY 177

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+  DH+D+  T +AYF      F   L      ++  DD ++  + +R
Sbjct: 178 S---PDIAVVTNIEPDHLDFFHTPEAYFQV-FDDFASRLTDTGVLVVCLDDEHAAALGER 233

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAI--------HNKQQVTISVEGKDFDFLFPLPGEFQ 311
                  V   G          +                  + V  ++ +    +PG   
Sbjct: 234 -QKTKVTVRGYGSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHM 292

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSN 367
           V NA  A    +  G D A + + + +   V  RFEF G     + RG  +Y DYAH   
Sbjct: 293 VLNAAAALTAGVLAGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPT 352

Query: 368 SLEMILKNIRT----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +  +L   R       SG++IVVF         +       AL LAD A+V D     E
Sbjct: 353 EVRAVLTAAREKLAARGSGQVIVVFQPHMYSRTQEFAAEFAEALSLADAAVVLDIYGARE 412

Query: 424 DP-EKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            P + I ++  I       + + N     +T  E+ +  D+++  G G  TV
Sbjct: 413 QPHDGITSQLIIDRMTNKVVHQPNFSLVPQTVAELAHPGDMVITMGAGDVTV 464


>gi|254419677|ref|ZP_05033401.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
 gi|196185854|gb|EDX80830.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
          Length = 470

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 152/428 (35%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      +++G  A+V S+A    +          I +V    +   + A  +  +   
Sbjct: 63  GHD--AAHVSEGVSAVVYSTAVKADNPEMKAARERRIPLV----RRAEMLAELMRLQFS- 115

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +   +GL    +     I+++  + ++     I       
Sbjct: 116 --IAVGGTHGKTTTTSMVAALLDAAGLDPTVVNG-GIINAYGTNAKVGDGDWI------- 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RL          TN+  +H+D++    A   A    F 
Sbjct: 166 ----------VVEADESDGSFLRLKST---VAIVTNIDPEHLDHYGDFDAVRKA-FVDFV 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTIS 294
           E +P    A +  D    ++++    N   R+++ G   + +     C +     +  + 
Sbjct: 212 ENIPFYGFAAVCLDHPEVQKLVASIDNR--RLVTYGINPQAMVRADNCQMGPDGARFDVV 269

Query: 295 VEGKDF----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++  +     +   P+ G   V NAL A  +   + +    + E L     V  RF   G
Sbjct: 270 IQNGETYRIENLHLPMAGWHNVSNALAAIAVARELDVSDEAIREGLAGFGGVKRRFTTTG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G RI  DY H    +  +LK  R +T GR+I V                  A   A
Sbjct: 330 V-VNGVRIVDDYGHHPVEIVAVLKAARQVTEGRVIAVVQPHRYTRLRDLMNEFSTAFSDA 388

Query: 411 DIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAI-------EMLNKQDV 461
           D  IV D  P  E P +      +  GI  +  +   ++A+  A        E     DV
Sbjct: 389 DSVIVADVYPAGEPPIEGVDKHALTDGIRRYGHRH--VQALENAAVLPRLIKEEARPGDV 446

Query: 462 LVVAGKGH 469
           +V+ G G 
Sbjct: 447 VVLLGAGD 454


>gi|229490386|ref|ZP_04384227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
 gi|229322676|gb|EEN88456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
          Length = 519

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 143/432 (33%), Gaps = 49/432 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E++   ++  +     ++   V  DSR +  G +F+A+ G + DGH     A+
Sbjct: 4   MTLSRIAEIVGG-TLHDVDDSSTQVTGTVEFDSRKVAPGGLFLALPGARVDGHDHAEAAV 62

Query: 65  AQ-----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           A            G  AIVV S  +    +  +  +            L L A  +  + 
Sbjct: 63  AAGAVAVLAARPVGVPAIVVPSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARAVVDEL 122

Query: 114 PEN---------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
             +         ++ VTG++GK+S    +  + +  G      G  +             
Sbjct: 123 ATDGTPADGGLTLVGVTGSAGKTSTKDLIAALLRECGEVVAPPGSFNNELGLPWTVLRAD 182

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
               +L      +S++GV HV                     G   N+G  H+    +++
Sbjct: 183 EKTRFLVL---EMSARGVGHVGE----------LTKIAPPKIGVVLNVGTAHLGEFGSRE 229

Query: 225 AYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLK 280
           A   AK  L E L        A++ ADD   + V   A     R++ VG           
Sbjct: 230 AIAVAKGELVEALPSAADGGVAVLNADD---RMVAAMASRTKARIVFVGQSEDCDVRATD 286

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            V     +   T++           + GE  V NAL AA + +  G+  A +   LE   
Sbjct: 287 VVVDDQARASFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADIARVLEGTK 346

Query: 341 VVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT------SGRIIVVFGCGGD 393
               R   V   + G  +  D Y    +S+   LK + ++         R   V G  G+
Sbjct: 347 AASARRMEVTERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGE 406

Query: 394 RDQGKRPIMGKI 405
                      I
Sbjct: 407 LGPESVVEHDAI 418


>gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL060PA1]
          Length = 485

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 120/389 (30%), Gaps = 45/389 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L   +   P+    +   +V  D+R +  G +F+A+ G + DGH F   A   GA 
Sbjct: 5   DVATLAQWVEAAPVNDSAQVGPDVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGK 126
           A++V+     Q          P LVVD+ +  LS  A  +     +     +AVTG+SGK
Sbjct: 65  AVLVTRRTDAQ---------LPHLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + QI +  G +   +G  +           +  +  +L                
Sbjct: 116 TSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSE------------- 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G        +        N+G  H+    +++    AK  + E L   +  A++
Sbjct: 163 MGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSV-DGWAVL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D     +  R                         +     +  + + ++  +  + 
Sbjct: 222 NAADTLVAGMAPRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGES 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAI-----------GIDSALVLEHLEKLHVVPGR--FEFV 349
            +  P       A   A    A             ID   V    E L     R      
Sbjct: 282 TWRSPVRLMTMGAYQVANAVAATAAALAAWAMNDDIDDESVTRIAEALSNAVSRSAMRMQ 341

Query: 350 GTNSRGGRIY--VDYAHTSNSLEMILKNI 376
                 G +     Y    +S+   L  +
Sbjct: 342 LRERADGLVLVEDCYNANPDSMAASLTAM 370


>gi|83312943|ref|YP_423207.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
 gi|82947784|dbj|BAE52648.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 470

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 160/452 (35%), Gaps = 46/452 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR I+ G +F+A+ G   DGH  +  A+A GA A +V               + 
Sbjct: 27  QGVSIDSRSIEPGDLFIALEGPNHDGHDHVASALANGAAAALVHK------LPRGTAEDA 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+++V +T   L         +    I+AVTG+ GK+     +       G + + +G  
Sbjct: 81  PLVLVKDTMTALQDLGIASRARSTARIVAVTGSVGKTGTKEMLALALSDQGATHYSVG-- 138

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +  +L+ + +     +     +H G     +  ++      
Sbjct: 139 ------------SFNNHWGVPLSLARMPTAVQYAIFEIGMNHPGEITPLVRMVRPHVAVI 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268
           T +   H+++  +      AK  +F+  +     A++  D+A+   +   A  AG + + 
Sbjct: 187 TTVEMVHMEFFASTAEIAAAKAEIFDG-VETGGTAVLPRDNAHFAYLNDAARTAGLKDIR 245

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S G   +       CA+  +     + V  +   +   + G     N+L       A+G 
Sbjct: 246 SFGNHIEATARLLDCAVDPQSTAVFALVADQPLSYRVGVAGRQWAMNSLAVLLAVEALGA 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLE---MILKNIRTITS 381
           D  L    L  +    GR +       GG    I   Y  +  S++    +L ++R    
Sbjct: 306 DVNLAAMALAAMAAPKGRGQRRRIEIEGGSFELIDESYNASPVSMKAAIAMLASVRPAKG 365

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR I V G   +       +   +A  +    I         D       +   +   + 
Sbjct: 366 GRRIAVLGDMLELGPQGPSLHASVAETVESWNI---------DLVFTAGTLTAHLHDALA 416

Query: 442 KGNR------IEAIRTAIEM-LNKQDVLVVAG 466
              R       +A+   ++  +   DV++V G
Sbjct: 417 APRRGGHAADSDAVAALVKAGVRPGDVVMVKG 448


>gi|159044963|ref|YP_001533757.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
 gi|157912723|gb|ABV94156.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
          Length = 470

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 140/422 (33%), Gaps = 43/422 (10%)

Query: 59  FIPQAIAQGAEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI Q     A+A  +V+SSA    +          + VV        L          ++
Sbjct: 66  FIGQVGENLADAEVVVISSAIKPGNPELETARARGLPVVRRAEMLAELMRL-------KS 118

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  +  R G+    I     I ++  + R      +        
Sbjct: 119 NIAIAGTHGKTTTTTMVATLLDRGGIDPTVING-GIIHAYDSNARAGAGEWM-------- 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VEA       +RL          TN+  +H+++  + +   +     F  
Sbjct: 170 ---------VVEADESDGTFNRLPAT---IAVVTNIDPEHMEHWGSFERLKDG-FHEFVS 216

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISV 295
            +P    A+   D    + ++ R  +          Q     +            + +  
Sbjct: 217 NIPFYGLAVCCTDHPEVQALVGRITDRRVVTFGFNTQADVRAVNLTYKSGVAHFDILLRN 276

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           EG+       P+PG+  V NAL A  +   +G+    +   L     V  RF  V     
Sbjct: 277 EGQVISGCTLPMPGDHNVSNALAAVAVARHLGMKRDEIRAALAGFAGVNRRFTKVAELG- 335

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  I  DY H    +  +LK  R  + GR+I V                    + AD+  
Sbjct: 336 GVTIIDDYGHHPVEIAAVLKAARQASEGRVIAVHQPHRFSRLASLFEDFCTCFNEADVVG 395

Query: 415 VTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
           ++D     EDP       + ++  I HG    +   +  +A+   I       D++V  G
Sbjct: 396 ISDIFAAGEDPIPGASRDDLVKGLIAHGHRHAVAVPD-EDALEALIRAEAKPGDIVVCLG 454

Query: 467 KG 468
            G
Sbjct: 455 AG 456


>gi|317501878|ref|ZP_07960063.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088609|ref|ZP_08337520.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896768|gb|EFV18854.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407566|gb|EGG87066.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 461

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 140/411 (34%), Gaps = 42/411 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           ++       ++A I  N P L+     K   L  + L G+  +N    +AV+GT GK++ 
Sbjct: 66  ITRDIGCVVYTAAINRNNPELIEAVALKIPMLTRAELLGQLMKNYDTPIAVSGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I    G     I     + +   + R+   S  ++ +A  Y +S          
Sbjct: 126 TSMISHILLE-GDLDPTISVGGILKAIGGNIRVG-NSGTFITEACEYTNSFLHFF----- 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  DH+D+ +  +   ++    F ELLP++   II A+
Sbjct: 179 --------------PKISVILNIEEDHLDFFKDLEDIRHS-FHQFAELLPEDGTLIINAE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDF--DFLFPL 306
               K+  +      C V++ G  G F +  K         V        ++       +
Sbjct: 224 ---IKDYAEIYEGLSCNVVTYGTNGCFDYSAKNITYDENGHVAFDLFRRGEYADHIQLSV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V NAL A  +   +G+   +    L        RFE+ G    G  +  DYAH  
Sbjct: 281 TGDHNVSNALSAIAVADILGLSIDITKRGLLSFTGTDRRFEYKG-EFNGVTVIDDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DP 425
             +   LK  +      +  VF                 AL  AD  ++ D     E D 
Sbjct: 340 TEILATLKAAQHSLHNSVWCVFQPHTYTRTKAFFHEFAEALSHADHLVLADIFAARETDT 399

Query: 426 EKI-RAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGH 469
             I  A++           +      +IEA     E     D+L+  G G 
Sbjct: 400 LGISSADLAKETEKLGTDTHYFPSFAQIEAFLK--ENCRPGDLLITMGAGD 448


>gi|260893411|ref|YP_003239508.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
 gi|260865552|gb|ACX52658.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
          Length = 461

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 145/411 (35%), Gaps = 45/411 (10%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKSSV 129
           +    L   S+ I+ + P L+    R+          + +   +    +AV G  GK++ 
Sbjct: 65  APETELVVVSSAIKPDNPELLAAREREIPVIRRGELLAWVMRDY--RGIAVAGAHGKTTT 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V  +    GL      PT  +  +                      S  VT      
Sbjct: 123 TAMVANVLLAGGLD-----PTVLVGGYWPLIEGNCRLGKG---------SYFVTEADESD 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +S  L       +  +    TN+  DH+DY+   +A   A  R F   +     A++  D
Sbjct: 169 ASFLL-------LTPMLAVVTNIENDHLDYYGNLEALLGA-FRTFLARIEPPGTAVVCLD 220

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
               ++++         V++ G + G    LKKV    +     +   G+        LP
Sbjct: 221 SPLVRQLIGVL---NIPVITYGMEEGADYILKKVELSGSSSSALLYYRGRLLGQLKLNLP 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + NA  A  +   +G+  A+  + L +   V  RFEF+G    G  +  DYAH   
Sbjct: 278 GKHNLLNAAAAVAVGAYLGVPFAVASQALAEFRSVRRRFEFLGEAG-GVMVVDDYAHHPT 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
            ++  ++  R I  GR++VVF                 +   AD+ ++ +  P  E P  
Sbjct: 337 EVQATIEAARQIHRGRLVVVFQPHRYTRTALLYPEFGRSFFGADVLVLDEIYPAGEPPLP 396

Query: 426 ----EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               E I        P    +        A     E+++  D+++  G G 
Sbjct: 397 GVTAELIAKACQDHCPDLPLYRLPSTGKAAFLK--EIVSPGDLVLTMGAGD 445


>gi|253681282|ref|ZP_04862080.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
 gi|253562520|gb|EES91971.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
          Length = 458

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 155/421 (36%), Gaps = 43/421 (10%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
            +GAE  +  +  ++++     ++A I  + P LV  +  +  ++  +   G   +    
Sbjct: 53  EKGAEIYIGHNKDNIKNVDLVVYTAAIPDSNPELVRAHELQIPTMDRAEFLGHVMQGHKY 112

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A++GT GK++  S +  I   S      I     +     + R+   S  ++ +A  Y
Sbjct: 113 NIAISGTHGKTTTTSMLSHI-TLSANLDPTILVGGNLDVINGNVRVG-NSDYFVTEACEY 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +S    +                      G   N+  DH+D+++      N  ++ F +
Sbjct: 171 KASFLKFY-------------------PYIGIILNIEADHLDFYKDINDIQNTFLK-FAK 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+PK+   I+ ADD      +  +    C +++ G     +  K +   + +    +   
Sbjct: 211 LIPKDGFLIVNADDE---RCLDISKEVDCNIITFGINNGEVRAKNIEFNNGRPTFDVYRN 267

Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               F     +PG   + +AL +    +++ +D+  ++E L   +    RFE  G    G
Sbjct: 268 NTKLFSLTLNVPGNHNILDALASISASLSLKVDTNSIIEGLSTFYGAHRRFEIKG-KLNG 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH    ++  L   +     +I  +F                 +   AD  ++
Sbjct: 327 ITVVDDYAHHPTEIKAALNAAKNFPHNKIFCIFQPHTYSRTISLFEDFADSFFNADTLVL 386

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAI-RTAIEMLNKQDVLVVAGKG 468
            D     E    I    I G     EKG      +  E I +   + L + D+L+  G G
Sbjct: 387 ADIYAAREKDTGIVNSDILG-DKIREKGVNCKNLHSFEDITKFLRQELKEGDLLITVGAG 445

Query: 469 H 469
            
Sbjct: 446 D 446


>gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
 gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
          Length = 825

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 150/398 (37%), Gaps = 33/398 (8%)

Query: 29  KINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            I  + +DSR +      +F A+   + DGH +I     +G    VV+    + +   + 
Sbjct: 23  DIGFLLTDSRSLCFPEETLFFALKTKRNDGHNYIADLYRRGVRNFVVT---DVPNNYDSA 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            S    L V +T + L   A R        I+ +TG++GK+ V  ++ Q+          
Sbjct: 80  YSGANFLKVIDTLEALQRLAERHRDAFDIPIVGITGSNGKTMVKEWLYQLMS-------- 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                T S  + ++++  P  ++L    + L            S  G      D I+   
Sbjct: 132 PDMYVTRSPRSYNSQVGVPLSVWLMDKQTRLGIFEA-----GISEKGEMSALRDIIQPTI 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TNLG  H +  ++ +     K  LF          + +ADD     V+      G R
Sbjct: 187 AVLTNLGSAHQENFESAEEKCREKAILF----HDAKTIVYHADDKIVAGVVASLDYRGER 242

Query: 267 V-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIA 324
           +  S   +   +++K V        +T   +G  +  +  P   +  V N++V A + + 
Sbjct: 243 LYWSTSDRQAPMYIKAVEKKETAATITYIYKGGIENWYSIPFIDDASVTNSIVCATIALH 302

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI--RTITS 381
           +G+D+  + E + +L  V  R E V     G  +  D Y    NSL++ L  +  R    
Sbjct: 303 LGLDADKLDERMLQLEPVAMRLE-VKEGRHGCTLINDSYNSDFNSLDIALDFMNRRPDHQ 361

Query: 382 GRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GR        +F  G +  +  R +    A    +  I
Sbjct: 362 GRRRTLILSDIFQSGVEPARLYRDVGELAAKRGVEKLI 399


>gi|295695332|ref|YP_003588570.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
 gi|295410934|gb|ADG05426.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
          Length = 466

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 142/428 (33%), Gaps = 47/428 (10%)

Query: 61  PQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK--H 113
            + + +GA   +   A  +       +S+ +  + P LV    R    L  S L  +   
Sbjct: 44  DELVRRGAVIAIGHRANQVDGADCVVYSSAVSPDNPELVEARRRGVRILHRSELLAEILQ 103

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV G  GK++ +S +  +  ++GL    I     +     +      + +     
Sbjct: 104 AKKGIAVAGAHGKTTTSSMIAFVMNQAGLDPTYI-----VGGVISNLGENAKAGLGPYAV 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                S G                            TN+  DH++ +  +        + 
Sbjct: 159 AEADESDGTFLNY----------------HPYVAVVTNIEPDHLENYGGKFENLRGAYKR 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   + +   A++ ADD     +  +      R +  G+  G     + V       +  
Sbjct: 203 FLGQVREGGLAVLCADDPELSNLGSQLAG---RTVWYGFSSGADWTAQDVDLHDGHSRCR 259

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +    +   D    +PG   + +AL A  +C   GI  + + E L        RF+ +  
Sbjct: 260 VFYRREHVGDLTLSVPGRHNISDALAAIAVCREAGIPFSTIAEILSSFRGAKRRFQQIAD 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            + G  I  DYAH    +E  L   RT T  RI+ VF                 A   AD
Sbjct: 320 VA-GVLIVDDYAHHPTEIEATLAAART-TGRRIVAVFQPQRYTRTHFLLDQFSYAFKDAD 377

Query: 412 IAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRI---------EAIRTAIEMLNKQDV 461
             I+TD   P  E  +KI       +   I + +           + I   +  ++  D+
Sbjct: 378 EVIITDIYSPVGE--QKIAGVSAERLAQLIRERSNERVWFLRQKQDVINDLLSRVHPGDL 435

Query: 462 LVVAGKGH 469
           ++  G G 
Sbjct: 436 VLFMGAGD 443


>gi|189029207|sp|A8LS63|MURC_DINSH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 464

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 140/422 (33%), Gaps = 43/422 (10%)

Query: 59  FIPQAIAQGAEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI Q     A+A  +V+SSA    +          + VV        L          ++
Sbjct: 60  FIGQVGENLADAEVVVISSAIKPGNPELETARARGLPVVRRAEMLAELMRL-------KS 112

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  +  R G+    I     I ++  + R      +        
Sbjct: 113 NIAIAGTHGKTTTTTMVATLLDRGGIDPTVING-GIIHAYDSNARAGAGEWM-------- 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VEA       +RL          TN+  +H+++  + +   +     F  
Sbjct: 164 ---------VVEADESDGTFNRLPAT---IAVVTNIDPEHMEHWGSFERLKDG-FHEFVS 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISV 295
            +P    A+   D    + ++ R  +          Q     +            + +  
Sbjct: 211 NIPFYGLAVCCTDHPEVQALVGRITDRRVVTFGFNTQADVRAVNLTYKSGVAHFDILLRN 270

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           EG+       P+PG+  V NAL A  +   +G+    +   L     V  RF  V     
Sbjct: 271 EGQVISGCTLPMPGDHNVSNALAAVAVARHLGMKRDEIRAALAGFAGVNRRFTKVAELG- 329

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  I  DY H    +  +LK  R  + GR+I V                    + AD+  
Sbjct: 330 GVTIIDDYGHHPVEIAAVLKAARQASEGRVIAVHQPHRFSRLASLFEDFCTCFNEADVVG 389

Query: 415 VTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
           ++D     EDP       + ++  I HG    +   +  +A+   I       D++V  G
Sbjct: 390 ISDIFAAGEDPIPGASRDDLVKGLIAHGHRHAVAVPD-EDALEALIRAEAKPGDIVVCLG 448

Query: 467 KG 468
            G
Sbjct: 449 AG 450


>gi|94309648|ref|YP_582858.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
 gi|93353500|gb|ABF07589.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
          Length = 856

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 149/384 (38%), Gaps = 28/384 (7%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA    G+ P  ++AV+GT+GK++    +  I   +GL    +G T T   + Q  R+ 
Sbjct: 461 MFADGDDGRIP--VVAVSGTNGKTTTVRLITHILASNGLR---MGMTGTDGVYIQGERID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           T        A + L    V     E +  GL +  L   +      TN+G  DH+   Y 
Sbjct: 516 TGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--------AHNAGCRVLSVGY 272
            T +     K  + + + P    A++ A D     +           AH+AG   +++  
Sbjct: 576 STVEDLAVLKSVIVQNVAPH-GMAVLNAADEMVARMADACPGTVTFFAHDAGLPTMALHR 634

Query: 273 QG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               + + ++    +  +    + +   D          FQV NA+ +     A+GID A
Sbjct: 635 AQGRRVVFVEGDQIVATEGDTEVRIPLADIPLTRNGSIGFQVENAMSSIAAAWALGIDWA 694

Query: 331 LVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           ++   L             F   + +G  +  DY H  ++++ +   + T+ S R +VV 
Sbjct: 695 VIRRALATFVNDAATAPGRFNVFDFKGATLIADYGHNPDAIQALCNAVETMPSKRRVVVI 754

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              GDR         +I   + D  ++  D   R  +  ++ A +  G+ G     +  E
Sbjct: 755 SGAGDRRDEDIRKQTQILGGVFDEVVLYQDQCQRGREDGEVLALLREGLQGAQRTSHVEE 814

Query: 448 ------AIRTAIEMLNKQDVLVVA 465
                 AI TA+  L   D+ ++ 
Sbjct: 815 IRGEFVAIDTALSHLQPGDLCLIL 838


>gi|242308785|ref|ZP_04807940.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pullorum MIT 98-5489]
 gi|239524678|gb|EEQ64544.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pullorum MIT 98-5489]
          Length = 230

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 17/246 (6%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH + Q+R++G++      TN+  DH+DYH+T + Y   K   F            
Sbjct: 1   MEVSSHAIVQNRIEGLEFALRILTNITSDHLDYHKTLENYIATKNSFFA----------T 50

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+    +  K A  +    ++ G +       K  ++       I+   ++      L
Sbjct: 51  PKDEKLINKDEKNAQYSLQNTMTYGIESNATFHIKAYSLKGGITAQIAYGKEEAMLNAYL 110

Query: 307 PGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G+  +YNAL A G    +      ++ + LE    V GR + V        I VD+AHT
Sbjct: 111 FGKHNLYNALAAIGAVKILTKSPLQMIADKLENFGGVLGRMQVVNEK---PLIIVDFAHT 167

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + +E + +   +    +I+V+FG GGDRD+ KRP MG  A   A    +T DNPRSE+P
Sbjct: 168 QDGMEQVFQ---SFLHQKIVVIFGAGGDRDKTKRPKMGYCASKYASKIYITSDNPRSENP 224

Query: 426 EKIRAE 431
           + I  E
Sbjct: 225 KMIMQE 230


>gi|325510630|gb|ADZ22266.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           EA 2018]
          Length = 458

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 88/434 (20%), Positives = 148/434 (34%), Gaps = 58/434 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDN-------TRK-FLSLFA 106
           I +    GAE  +  +  ++ +     ++A I  + P L+          TR  FL    
Sbjct: 48  IDKLKEHGAEIYLGHNEKNINNVDIVVYTAAIPEDNPELIYARKNNISLMTRAEFLGSLM 107

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLT 163
                      +A++GT GK++  S V  I          + PT  +         N L 
Sbjct: 108 KGHKYN-----IAISGTHGKTTTTSMVSHIALTE-----DVDPTILVGGNLDIINGNVLA 157

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             S  ++ +A  Y +S    +                      G   N+  DH+DY++  
Sbjct: 158 GKSDYFITEACEYKASFLEFY-------------------PYIGVILNIDADHLDYYKNI 198

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
               N   + F  L+PKE   I  ADD   K V + A NA C V+S G     I  K + 
Sbjct: 199 DDIENTFAK-FVNLIPKEGYLIANADD---KRVARVASNATCNVVSFGIDNGDIRAKNIS 254

Query: 284 AIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              +        +  +  F+    +PG+  + NAL A    + + I    +++ L+    
Sbjct: 255 FNESGFSSFDVYKSSELLFNIKLNVPGKHNILNALSAIASALTLKISHKSIIDGLKSFKG 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              RFE  G    G  +  DYAH    ++  L   +     +I  VF             
Sbjct: 315 THRRFEIKGVK-NGITVIDDYAHHPTEIKATLDAAKNYPHNKIYCVFQPHTYSRTLSLFD 373

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNR----IEAIRTAIEM 455
               +    D  ++ D     E    + + +     I     K +      + +      
Sbjct: 374 DFSNSFSGVDELVLADIYAAREKDTGVVSSLKLSEAINKNGVKSSNLHSFEDIVNYFKSK 433

Query: 456 LNKQDVLVVAGKGH 469
           LN  D+L+  G G 
Sbjct: 434 LNDGDILLTVGAGD 447


>gi|114763032|ref|ZP_01442462.1| UDP-N-acetylmuramate--L-alanine ligase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544356|gb|EAU47364.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. HTCC2601]
          Length = 478

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 142/415 (34%), Gaps = 49/415 (11%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE +V+SSA      +     R   P++        L            ++ +AV GT G
Sbjct: 82  AEVVVISSAIKPGNPELDEARRRGLPVVRRAEMLAELMRL---------KSNVAVAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  +   +G     +     I ++  + R+     +                 
Sbjct: 133 KTTTTTMVATLLD-AGQLDPTVINGGIIHAYGSNARVGLGEWM----------------- 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++  + +   +   + F   +P    A+
Sbjct: 175 VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGSIENLRDGFYQ-FVSNIPFYGLAV 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDF 302
              D A  + ++ R  +          Q   +    +          I ++G+D    + 
Sbjct: 231 CCTDHAEVQALVGRVSDRRVTTYGFNAQAD-VRAVNLRYEKGIAHFDILLQGEDSKIEEC 289

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  +  DY
Sbjct: 290 TLPMPGDHNVSNALAAVAVARHLGMTREEIRAALAAFGGVNRRFTRVG-EVNGVTVIDDY 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  + GR+I V                    + AD+  + D     
Sbjct: 349 GHHPVEIAAVLKAARQASEGRVIAVHQPHRYSRLHTLFDDFCACFNEADVVAIGDVYGAG 408

Query: 423 EDP--EKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
           EDP     R +++ G+     +  R  AI       R   E     D++V  G G
Sbjct: 409 EDPIEGASRDDLVAGLIRHGHRHAR--AIHDEDDLERLVREQARPGDMVVCLGAG 461


>gi|300871753|ref|YP_003786626.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
 gi|300689454|gb|ADK32125.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
          Length = 460

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 148/429 (34%), Gaps = 56/429 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      +     A+V SSA S  +          I+V+    + L+       G    
Sbjct: 58  GHK--ESNVEDDVTAVVSSSAISPTNEEIISAKKKNIIVIPRG-EMLAEIMRLKQG---- 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A++G+ GK++  S + QI   + L+   I     I     + +             +
Sbjct: 111 --IAISGSHGKTTTTSLISQIMIEAKLNPICI-----IGGNHFNLKS------------N 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              +    ++  EA        RL     +    TN+  DH+DY+   +    A    F 
Sbjct: 152 AYCNLNSEYMVCEADESDGSFLRLS---PVFSVVTNIDNDHLDYYGNVEKLRLA-FLDFI 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---VCAIHNKQQVT 292
             +P    + +  ++   K++ K       +  S G+  ++        +     K    
Sbjct: 208 NKVPFYGCSFLCFENDVVKDLAKSVSK---KYYSYGFSNEYDFYVDKSSIKTEEFKTYFK 264

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              + K   +F  PL GE  V N+L +  +   + ID+  + + L+    V  R   +  
Sbjct: 265 AYYKDKFLGEFELPLIGEHNVLNSLASIAVAYHLDIDTDTIKKALKTFEGVGRRLNKL-- 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +   ++ DY H    ++  L ++R      RII +F               + A   A
Sbjct: 323 YDKEITLFDDYGHHPTEIKATLSSLRNAYKDRRIIAIFQPHRYSRTQLLLNDFENAFLDA 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEI----IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           D  I+TD     E P      E I   +    I  I    +    +E I+         D
Sbjct: 383 DNLIITDIYAAGESPIAGISGETICKIVKNNNIKYIKNIEDILPELEKIK------KDGD 436

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 437 IIITLGAGN 445


>gi|15896472|ref|NP_349821.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
 gi|25008805|sp|Q97E89|MURC_CLOAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15026298|gb|AAK81161.1|AE007818_7 UDP-N-acetylmuramate-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
          Length = 458

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 88/434 (20%), Positives = 148/434 (34%), Gaps = 58/434 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDN-------TRK-FLSLFA 106
           I +    GAE  +  +  ++ +     ++A I  + P L+          TR  FL    
Sbjct: 48  IDKLKEHGAEIYLGHNEKNINNVDIVVYTAAIPEDNPELIYARKNNISLMTRAEFLGSLM 107

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLT 163
                      +A++GT GK++  S V  I          + PT  +         N L 
Sbjct: 108 KGHKYN-----IAISGTHGKTTTTSMVSHIALTE-----DVDPTILVGGNLDIINGNVLA 157

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             S  ++ +A  Y +S    +                      G   N+  DH+DY++  
Sbjct: 158 GKSDYFITEACEYKASFLEFY-------------------PYIGVILNIDADHLDYYKNI 198

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
               N   + F  L+PKE   I  ADD   K V + A NA C V+S G     I  K + 
Sbjct: 199 DDIENTFAK-FVNLIPKEGYLIANADD---KRVARVASNATCNVVSFGIDNGDIRAKNIS 254

Query: 284 AIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              +        +  +  F+    +PG+  + NAL A    + + I    +++ L+    
Sbjct: 255 FNESGFSSFDVYKSSELLFNIELNVPGKHNILNALSAIASALTLKISHKSIIDGLKSFKG 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              RFE  G    G  +  DYAH    ++  L   +     +I  VF             
Sbjct: 315 THRRFEIKGVK-NGITVIDDYAHHPTEIKATLDAAKNYPHNKIYCVFQPHTYSRTLSLFD 373

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNR----IEAIRTAIEM 455
               +    D  ++ D     E    + + +     I     K +      + +      
Sbjct: 374 DFSNSFSGVDELVLADIYAAREKDTGVVSSLKLSEAINKNGVKSSNLHSFEDIVNYFKSK 433

Query: 456 LNKQDVLVVAGKGH 469
           LN  D+L+  G G 
Sbjct: 434 LNDGDILLTVGAGD 447


>gi|313885847|ref|ZP_07819588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924676|gb|EFR35444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 458

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 132/384 (34%), Gaps = 29/384 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIRS 88
           + + +D+RH++   +FV++ G   DG+ F   A+ QG +  +V   S     D S     
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              I   D   + L   A     K     +A+TGT+GK++    V  +           G
Sbjct: 78  ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +             P   ++   L      G +H+   AS   L Q          G 
Sbjct: 138 NYNNEIGVPLTLLQVRPEHQFVIVEL------GASHIGDIASLCKLAQ-------PQYGI 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--- 265
            TN+GR H+    T +    AK  L+  L      A    +D      +           
Sbjct: 185 ITNVGRAHLSGFGTPEGVIKAKSELYAYLREHSGQAFCNGEDKTLISNLNGLPTVYYNGT 244

Query: 266 ---RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              RV           L K+     +        G+ +     L G++ + N L A  + 
Sbjct: 245 TSPRVTGAVLPTDESGLLKIEWCDQET-------GESYQLATKLVGDYNLNNILAAITVG 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           +  G+D   + E +        R + +   ++G R+ +D Y    +S+E+ L +  T+  
Sbjct: 298 LHFGLDPKTINEAVTNYQPHNERSQVLPPTAQGNRVILDCYNANPSSMEVALSSYFTMDC 357

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI 405
             +  +   G   + G       I
Sbjct: 358 QGLNRMLILGDMNELGDAAESEHI 381


>gi|319791669|ref|YP_004153309.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
 gi|315594132|gb|ADU35198.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
          Length = 494

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 90/431 (20%), Positives = 149/431 (34%), Gaps = 53/431 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A A   GA+A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAAAHIEGADAVVTSTAVQSDNPEVLAAREKRIPVVPRALM-LAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  +   +GL      PT  I                L  A + 
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLDAAGLD-----PTFVIGGR-------------LNSAGAN 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  ++ VEA     D   L+ +  +    TN+  DH++ +    A        F  
Sbjct: 149 AQLGSGDYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFAKLKKAFVDFLH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P    AI+  DDA  ++++ +     C V S G+ G+   ++ V       Q+  + +
Sbjct: 206 RMPFYGVAILCTDDAAVRDIVAQVT---CPVTSYGF-GEDAQVRAVDVRAVGGQMHFTAQ 261

Query: 297 GK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +      D   +  LPGE  V NAL    + + +GI    V   L     V  RF+  G
Sbjct: 262 RRNGVTLPDLPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYG 321

Query: 351 TNSRGG-----RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGK 404
             S  G      +  DY H    +   +   R    GR +V+ F                
Sbjct: 322 EVSVPGGTGSFTVIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFV 381

Query: 405 IALDLADIAIVTDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             +  AD  ++ +     E P          RA  + G    +   +     +  ++   
Sbjct: 382 KVIGTADSVLLGEVYAAGEAPIVAADGRTLARALRVAGKVEPVFVDDIAAMPQAVLDNAR 441

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 442 PGDVVLSMGAG 452


>gi|309379062|emb|CBX22364.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 452

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 146/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSVGKTTVKEMLAAVLRR---RFGNDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R HI            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGIALIPQEDANLAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAINVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
 gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
          Length = 445

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 164/420 (39%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +      +  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLAGIV- 105

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 106 ----NRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   + L  +G       +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 148 ----PVLEAELQREGKKADMWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F      +   ++ ADDA+ + + +       +  S+ ++  F   ++   
Sbjct: 202 DYAHTKAKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHKADFWLERETGC 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P 
Sbjct: 256 LKQGNEDLIATQD------IPLQGLHNAANVMAAIALCEAVGLPREALLEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   
Sbjct: 310 RVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A     + ++  D P      +IR ++       I+     EA++ A       D++++
Sbjct: 365 LAGKAKGVFLIGVDAP------QIRRDLDGCGLNMIDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|75675240|ref|YP_317661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           winogradskyi Nb-255]
 gi|74420110|gb|ABA04309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 92/469 (19%), Positives = 164/469 (34%), Gaps = 39/469 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+   +           I  +S DSR +  G  + AI G+  DGH F+  A+  GA  
Sbjct: 9   LDEMAAAMRAEGRGTLPAAITGISIDSRTVAPGEAYFAIKGDVHDGHAFVGAALKAGAAL 68

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VV +A   Q          P+LVVD+    L   A     +    ++AVTG+ GK+S  
Sbjct: 69  AVVEAARRDQ-----FALELPLLVVDDVLAALRDLARASRARLAAQVIAVTGSVGKTSTK 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             ++ +    G +         +S  + +N    P  +    A +  +        +  +
Sbjct: 124 EALRGVLGAQGKTH--------VSVASFNNHWGVPLSLSRCPADARFA-----VFEIGMN 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G     +  ++      T +   H+++    +A  +AK  +FE + P +   ++  D+
Sbjct: 171 HAGEITPLVKMVRPHVAIITTVEPVHLEFFSGVEAIADAKAEIFEGVEP-DGAVVLNRDN 229

Query: 251 AYSKEVMKRAHN-AGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           A    + + A      ++++ G  +     L  +        V   + G +  +   +PG
Sbjct: 230 AQFARLQECARKLGIAKIVTFGADEKADARLLDLALHPAGSAVHAEILGSELTYKLGMPG 289

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVD--YAHT 365
                N+L         G D AL    L +     GR        RGG  + +D  Y   
Sbjct: 290 RHMAMNSLAVLAAASLAGADLALAGLALSQAQPAAGRGVRRALAVRGGEALLIDESYNAN 349

Query: 366 SNSLEMILKN---IRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             S+   L      +  T GR I V       G       R + G I  +  D+      
Sbjct: 350 PASMAAALNVLGEAKVGTQGRRIAVLGDMLELGPRSADLHRDLTGAIDANDVDMIFCCGP 409

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
             R      +   +  G  G   +     A+ + +       DV++V G
Sbjct: 410 LMR-----NLWNALSSGRRGGYAED--AAALESQVTAAIRSGDVIMVKG 451


>gi|295094465|emb|CBK83556.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus sp. ART55/1]
          Length = 460

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 88/417 (21%), Positives = 151/417 (36%), Gaps = 58/417 (13%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKS 127
           +V ++A     ++F A +  N P+L    TR + L               +AV+GT GK+
Sbjct: 73  VVYTAAIHPDNEEFKAAVEKNIPML----TRAQLLGQIMENYKYS-----IAVSGTHGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   +  +   I     + S   + R+             Y  ++   + + 
Sbjct: 124 TTTSMLSYILIDA-DTDPTISVGGILDSIGGNIRVGKSE---------YFVTEACEYTN- 172

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S H          K       N+  DH+D+ +       +   +F    PKE   I+ 
Sbjct: 173 --SYHA--------FKPFISIILNVDADHLDFFKDIDEIAES-FHVFATKTPKEGLVIVN 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
            D  Y   V++      CRV++ G   Q K+               T+ V+GK+  D   
Sbjct: 222 GDMKYYDTVVRDLE---CRVVTFGKGAQNKYSAHNIRFDDFGHPTYTLVVDGKEITDITL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + GE  VYN+L A    + +GI   ++ + L +      RFE+ GT     R+  DYAH
Sbjct: 279 KVFGEHNVYNSLSAIAASLELGISIDVIKQGLSECVGAERRFEYKGTILDNVRVMDDYAH 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               +   LK  +  +   +  VF                 AL + D  IV D     E 
Sbjct: 339 HPTEIAATLKAAKNTSYNELWCVFQPHTYSRTYALFDEFVDALKVCDHVIVADIYAAREK 398

Query: 425 ------PEKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  +++  +I         +P F +  N        ++   K D+L+  G G+
Sbjct: 399 DTGLVSAKQLAEKIAETGTDAFYLPSFDDIEN------YLLKNCKKNDLLITMGAGN 449


>gi|149007559|ref|ZP_01831194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
 gi|147760918|gb|EDK67888.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
          Length = 353

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 25/299 (8%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLS 178
           TGT GK++   F   I  + G     +   +T         + LTTP  I L   ++   
Sbjct: 117 TGTKGKTTATYFAYNILSQ-GHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
               TH+ +E SS     HR+ G+    G F N+  DHI    H + + YF  K  L E 
Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRLLMEN 235

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   II +D  +   + ++  +         +  +  + K          + I +
Sbjct: 236 ----SRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGNSLEIMI 290


>gi|153815035|ref|ZP_01967703.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
 gi|145847603|gb|EDK24521.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
          Length = 458

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 140/411 (34%), Gaps = 42/411 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           ++       ++A I  N P L+     K   L  + L G+  +N    +AV+GT GK++ 
Sbjct: 66  ITRDIGCVVYTAAINRNNPELIEAVALKIPMLTRAELLGQLMKNYDTPIAVSGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I    G     I     + +   + R+   S  ++ +A  Y +S          
Sbjct: 126 TSMISHILLE-GDLDPTISVGGILKAIGGNIRVG-NSGTFITEACEYTNSFLHFF----- 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  DH+D+ +  +   ++    F ELLP++   II A+
Sbjct: 179 --------------PKISVILNIEEDHLDFFKDLEDIRHS-FHQFAELLPEDGTLIINAE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDF--DFLFPL 306
               K+  +      C V++ G  G F +  K         V        ++       +
Sbjct: 224 ---IKDYAEIYEGLSCNVVTYGTNGCFDYSAKNITYDENGHVAFDLFRRGEYADHIQLSV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V NAL A  +   +G+   +    L        RFE+ G    G  +  DYAH  
Sbjct: 281 TGDHNVSNALSAIAVADILGLSIDITKRGLLSFTGTDRRFEYKG-EFNGVTVIDDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DP 425
             +   LK  +      +  VF                 AL  AD  ++ D     E D 
Sbjct: 340 TEILATLKAAQHSLHNSVWCVFQPHTYTRTKAFFHEFAEALSHADHLVLADIFAARETDT 399

Query: 426 EKI-RAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGH 469
             I  A++           +      +IEA     E     D+L+  G G 
Sbjct: 400 LGISSADLAKETEKLGTDTHYFPSFAQIEAFLK--ENCRPGDLLITMGAGD 448


>gi|302391532|ref|YP_003827352.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM
           5501]
 gi|302203609|gb|ADL12287.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM
           5501]
          Length = 469

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 85/423 (20%), Positives = 162/423 (38%), Gaps = 45/423 (10%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
            +GA+  +   A +++       S+ I  + P LV         L  + + GK       
Sbjct: 47  QKGAKVSIGHQASNIEGADEVVLSSAIPEDNPELVKAKKEGLPILKRAEMVGKLMSKQQG 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           ++++GT GK++  +    + +++                + D+ +     + L    +  
Sbjct: 107 ISISGTHGKTTTTAMAATVLEKN----------------SLDSTILVGGKLDLISGSNAK 150

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   ++    S G     L  +    G  TN+  DH+DY+++     +   + F   
Sbjct: 151 LGTGDYFITEADESDGS----LLFMDPKIGVVTNIEADHLDYYESCSEIIDTFSK-FLNS 205

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISV 295
           LP +   I+  DD   ++++ R       +++ G   K   + K   +     + V    
Sbjct: 206 LPSDGVGIVSLDDNEIRDMVDRV---DTDLITYGLNNKAEIMAKDIELQEFGSKSVIYRY 262

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + +  +    +PG+  + NAL   G+ + IG++ + + E L+    V  RFE +G   RG
Sbjct: 263 QDRLGELKLNVPGKHNLSNALAVIGIGLHIGLEFSKIAEALKDFTGVKRRFEKLG-KYRG 321

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH    LE  L     +   RII VF                +A   AD  I+
Sbjct: 322 AVLVDDYAHHPTELEATLAAANNMDFERIIAVFQPHRYTRTKFLLEEFSLAFGDADEVII 381

Query: 416 TDDNPRSEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           TD     E+P      EKI   I   +     FI + +++       + +   D+++  G
Sbjct: 382 TDIYASGEEPIPGVKAEKIAELINQRVFQKAKFIAELDKVY--DYLKDRIGAGDLVLTLG 439

Query: 467 KGH 469
            G 
Sbjct: 440 AGD 442


>gi|29840626|ref|NP_829732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
 gi|29834976|gb|AAP05610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
          Length = 448

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 174/472 (36%), Gaps = 45/472 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +Q ++ +D+  L+     +P   +  KI+ V+ DSR ++ G +F A+ G   DGH F+  
Sbjct: 1   MQSILLEDWVSLMLSDVKYPRSGK--KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKH 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A VVS  Y    F         +++V++  + L              I+ +TG
Sbjct: 59  AAQAGAVAAVVSKDYCGDSF------GLELIIVNDPTEALKEAGENQSHLFQGTIVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++   F                  S    +A      +   + L+  ++   ++  
Sbjct: 113 SIGKTTTKVFANTFLS------------SVYKVYASPKSYNSQLTVPLSLLMAD-GNEDF 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPK 240
             + +  S  G  +  L  ++      TN+   H      +  Q     K R+    L  
Sbjct: 160 IILEMGVSEPGNMKDLLSIVEPEVAVITNVVDQHAMNFSDKGIQGIAEEKGRI----LQN 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  D  +    +K+A ++     +   +    + K +     K  V IS    D 
Sbjct: 216 SRVQLLPKDSPWYPHFIKQASSSEKFSFAFHNETADFYYKAIR----KDSVIISTPEGDI 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF    P +    N L++  L   + +    ++     L + P RFE   +   G ++  
Sbjct: 272 DFAISFPYQPAYSNLLISLSLAWLLEVPVDRIVHSCCDLQLPPMRFE--QSMRNGIQVIN 329

Query: 361 D-YAHTSNSLEMILKN-IRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIV 415
           D Y     ++   L        SG+II++ G   +     +    I+ K AL  A I   
Sbjct: 330 DAYNACPEAMIAALDAIPHPSESGKIILILGHMAELGNYSEEGHTIVAKKALSKASIIFF 389

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAG 466
                  E    I+  + +G        +  + I   ++  + + D++++ G
Sbjct: 390 I-----GEKWLPIQHVLNYGSCEVSFHPS-AQGIEEILKKVVQQGDIVLLKG 435


>gi|229588491|ref|YP_002870610.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
 gi|259509778|sp|C3KCT1|MURC_PSEFS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229360357|emb|CAY47214.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
          Length = 481

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 144/430 (33%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAE--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +          +
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  +             F
Sbjct: 170 AEADESDASFL---------------HLQPLVAVVTNIDADHMATYDGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G+ +   +    V     +   T 
Sbjct: 215 LHNLPFYGLAVVCLDDPVVREILPQVKRP---TVTYGFSEDADVRAINVRQEGMQTYFTV 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
           +  + +  D    +PG   V N+L    +    G+    ++E L +   V  RF+    +
Sbjct: 272 LRPDREPLDVSVNMPGNHNVLNSLATICIATDEGVSDEAIVEGLSRFAGVGRRFQVYGQL 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K +R      R+++V+                  L 
Sbjct: 332 PVEGGDVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVNVLA 391

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQ 459
            A++ ++ +  P  E+P  I       +   I +  +++   I   +++           
Sbjct: 392 DANVLLLMEVYPAGEEP--IPGADSRKLCNSIRQRGQLDPIYIERGVDLAPIVKPLLRAG 449

Query: 460 DVLVVAGKGH 469
           D+L+  G G 
Sbjct: 450 DILLCQGAGD 459


>gi|317124649|ref|YP_004098761.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
 gi|315588737|gb|ADU48034.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
          Length = 488

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 147/420 (35%), Gaps = 49/420 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSV 129
           +   A      S++IR +   L     R    L  S+  G   H +  +AV G +GK++ 
Sbjct: 83  LHQEAAQTIVMSSSIRDDNVELRAARARGAKVLHRSQGLGSLMHGQRPVAVAGANGKTTT 142

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +    Q  GL                D        +      ++  +  +  V  + 
Sbjct: 143 TSLLTVALQGCGL----------------DPSFAVGGELARHGTNAHRGADDIFVVEADE 186

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S      +R           TN+  DH+D++ +      A   L   + P     +  AD
Sbjct: 187 SDGSFIVYR-----PEVAIVTNVQPDHLDFYGSFAVVQAAYEALVATIQP-GGLLVTCAD 240

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DA S+ + +RA   G RVL+ G++    + L            T+  EG        +PG
Sbjct: 241 DAGSRALAERATARGTRVLTYGFRPDADVALGDYRQDGLTSGATVLDEGVRRLLTLGIPG 300

Query: 309 EFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                NA+ A       +G     VL  L        RFE  G  + G  +  DYAH + 
Sbjct: 301 RHNALNAVAAYTAAVHGLGQQPDRVLAGLASFTGTRRRFEPKGEAA-GVVVVDDYAHNAG 359

Query: 368 SLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +  +++    +    GR+IVVF            +     L  AD+ IV D     EDP
Sbjct: 360 KVAAVVETASQLVVRPGRLIVVFQPHLYSRTRDFAVELGRGLAPADVVIVMDVYAAREDP 419

Query: 426 ------EKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 E +   +        +H +P + E  + +       ++    D+++  G G  T
Sbjct: 420 VPGVSGELVADAVRRTGRGSDVHYVPSWSEVPSVVA------QVARAGDLVLTVGAGDVT 473


>gi|296140341|ref|YP_003647584.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
 gi|296028475|gb|ADG79245.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
          Length = 495

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 97/451 (21%), Positives = 154/451 (34%), Gaps = 69/451 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFS----------ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           A+GA+  V  SA +L              A I  + P LV  + R    +    +     
Sbjct: 55  ARGAQVQVGHSADALDLLPGGPTVVVTTHAAIPKDNPELVEAHRRGIPVILRPEVLADLM 114

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           E    L V+GT GK+S  S      Q  G   SF +G     S                 
Sbjct: 115 EGYRTLLVSGTHGKTSTTSMAVVGLQHCGGNPSFAVGGELNESGTN-------------- 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              ++  +  V     + S   L Q+            TN+  DH+D+  +++ Y  A  
Sbjct: 161 ---AFHGTGDVFVAEADESDGSLLQY-----SPDVVVVTNVEADHLDFFGSEEKYV-AVF 211

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHN 287
             F E +      ++  DD  S  + +R H A    G RV   G          V  I  
Sbjct: 212 DAFTERIRPGGTLVVCLDDPGSAALGQRTHAALRARGVRVFGYGEGTHRDLAPDVTLIAE 271

Query: 288 KQQVTISVEGK--------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                   EG               +   +  +PG+    NA+ A    + +G  +A V+
Sbjct: 272 LLDYKPRAEGGMLKVRFSDENRQVTERAIMLSVPGKHMALNAIAATIAVVNLGYPTAKVI 331

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVF 388
             +E    V  RF+  GT   G R++ DYAH    +  +L     +       GR+IV F
Sbjct: 332 AGIESFGGVHRRFQLRGTE-DGVRVFDDYAHHPTEVRAVLTAAAEMVAKQAVPGRVIVAF 390

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEK 442
                    +       AL LAD  +  D     E P      E+I  ++   +     +
Sbjct: 391 QPHLYSRTEQFAAEFAEALSLADHVVALDVYGAREAPLPGITGERIAEKVTTDVTYVPSQ 450

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            +      T +++    DV++  G G  T+ 
Sbjct: 451 ADVA---GTVVDIARPGDVVITMGAGDVTMQ 478


>gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA2]
 gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA3]
 gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA4]
 gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA2]
 gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL103PA1]
          Length = 485

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 120/389 (30%), Gaps = 45/389 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L   +   P+    +   +V  D+R +  G +F+A+ G + DGH F   A   GA 
Sbjct: 5   DVATLAQWVEAAPVNDSAQVGPDVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGK 126
           A++V+     Q          P LVVD+ +  LS  A  +     +     +AVTG+SGK
Sbjct: 65  AVLVTRRTDAQ---------LPHLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + QI +  G +   +G  +           +  +  +L                
Sbjct: 116 TSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSE------------- 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G        +        N+G  H+    +++    AK  + E L   +  A++
Sbjct: 163 MGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSV-DGWAVL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D     +  R                         +     +  + + ++  +  + 
Sbjct: 222 NAADTLVAGMAPRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGES 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAI-----------GIDSALVLEHLEKLHVVPGR--FEFV 349
            +  P       A   A    A             ID   V    E L     R      
Sbjct: 282 TWRSPVRLMTMGAYQVANAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQ 341

Query: 350 GTNSRGGRIY--VDYAHTSNSLEMILKNI 376
                 G +     Y    +S+   L  +
Sbjct: 342 LRERADGLVLVEDCYNANPDSMAASLTAM 370


>gi|104783452|ref|YP_609950.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas entomophila
           L48]
 gi|122401968|sp|Q1I5B9|MURC_PSEE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|95112439|emb|CAK17166.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas entomophila L48]
          Length = 482

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 149/430 (34%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A +  A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAS--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG   T +        +          +
Sbjct: 119 --VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  ++            F
Sbjct: 170 AEADESDASFL---------------HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G+ +   I    V     +   T 
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRP---TVTYGFSEEADIRAINVRQQGMQTHFTV 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
           +  + +  +    +PG   V NAL    +    GI    +++ L     V  RF+    +
Sbjct: 272 LRRDCEPLEVSVNMPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K +R    S R+++V+                  L 
Sbjct: 332 PVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRTRDLYDDFVQVLG 391

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
            A++ ++ +  P  E+  P     ++ H I       P +IE+G   E       +L   
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERG--AELAPLVKPLLRAG 449

Query: 460 DVLVVAGKGH 469
           D+L+  G G 
Sbjct: 450 DILICQGAGD 459


>gi|225021927|ref|ZP_03711119.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945314|gb|EEG26523.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 477

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 143/412 (34%), Gaps = 48/412 (11%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSG 141
           A I  + P LV         +  S L G+       + + GT GK+S  S      Q +G
Sbjct: 78  AAIPQDNPELVAAREHNIPVIRRSDLLGELMTGSTQVLIAGTHGKTSTTSMAVVAMQAAG 137

Query: 142 LSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRL 199
           +   F IG     +                       + QG  H  V EA        R 
Sbjct: 138 MDPSFAIGGQLNKAGTN--------------------AHQGSGHCFVAEADESDASLLRY 177

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+  DH+D+  T +AYF      F   L      ++  DD ++  + +R
Sbjct: 178 S---PDIAVVTNIEPDHLDFFHTPEAYFQV-FDDFAARLTDTGVLVVCLDDEHAAALGER 233

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAI--------HNKQQVTISVEGKDFDFLFPLPGEFQ 311
                  V   G          +                  + V  ++ +    +PG   
Sbjct: 234 -QKTKVTVRGYGSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHM 292

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSN 367
           V NA  A    +  G D A + + + +   V  RFEF G     + RG  +Y DYAH   
Sbjct: 293 VLNAAAALTAGVLAGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPT 352

Query: 368 SLEMILKNIRT----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +  +L   R       SG++IVVF         +       AL LAD A+V D     E
Sbjct: 353 EVRAVLTAAREKLAARGSGQVIVVFQPHMYSRTQEFAAEFAEALSLADAAVVLDIYGARE 412

Query: 424 DP-EKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            P + I ++  I       + + N     +T  E+ +  D+++  G G  TV
Sbjct: 413 QPHDGITSQLIIDRMTNKVVHQPNFSLVPQTVAELAHPGDMVITMGAGDVTV 464


>gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL001PA1]
          Length = 485

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 120/389 (30%), Gaps = 45/389 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L   +   P+    +   +V  D+R +  G +F+A+ G + DGH F   A   GA 
Sbjct: 5   DVATLAQWVEAAPVNDSAQVGPDVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGK 126
           A++V+     Q          P LVVD+ +  LS  A  +     +     +AVTG+SGK
Sbjct: 65  AVLVTRRTDAQ---------LPHLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + QI +  G +   +G  +           +  +  +L                
Sbjct: 116 TSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSE------------- 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G        +        N+G  H+    +++    AK  + E L   +  A++
Sbjct: 163 MGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSV-DGWAVL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D     +  R                         +     +  + + ++  +  + 
Sbjct: 222 NAADTLVAGMAPRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGES 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAI-----------GIDSALVLEHLEKLHVVPGR--FEFV 349
            +  P       A   A    A             ID   V    E L     R      
Sbjct: 282 TWRSPVRLMTMGAYQVANAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQ 341

Query: 350 GTNSRGGRIY--VDYAHTSNSLEMILKNI 376
                 G +     Y    +S+   L  +
Sbjct: 342 LRERADGLVLVEDCYNANPDSMAASLTAM 370


>gi|239917865|ref|YP_002957423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413641|ref|ZP_06245383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839072|gb|ACS30869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
          Length = 504

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 87/467 (18%), Positives = 153/467 (32%), Gaps = 58/467 (12%)

Query: 32  EVSSDSRHIQ-AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            V+ DSR +   G ++VA  G + DGH FI  A+  GA A++   A    D +A      
Sbjct: 29  HVTPDSREVTAEGTLYVAKPGERADGHDFIDTALGAGAAAVLAERATHAPDGAAH----- 83

Query: 91  PILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           P ++V++    +   A     R+    P  ++ +TG++GK++    +  +    G +   
Sbjct: 84  PAIIVEDAVLAMGALAREVVRRVREHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAP 143

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +G  +                 +L      +   G  HV       G   +  D ++   
Sbjct: 144 VGSYNGEVGVPLTVFRAELDTRFL------VVEMGADHV-------GNIAYLCDIVRPDI 190

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G    +G  H             K  L E L P +  A++  DD     +  R       
Sbjct: 191 GVVLMVGTAHAGSFGGVANIARTKGELVEALGP-DGVAVLNLDDERVAGMAARTAAPITW 249

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKD----------------FDFLFPLP 307
             +   +G     + V A      V    +  + ++                      L 
Sbjct: 250 -FTADERGVTRAAEDVAAGRASGLVAARDVRSDDQERPVFDLQVGTDEAAVRHPVASGLT 308

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
           G   V+N L AA    A G+D A +   L+ L             + G  I  D Y    
Sbjct: 309 GLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLGPASRFRMERTDRADGVTIINDAYNANP 368

Query: 367 NSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDD 418
            S+   L+ + T+   +  R   V G   +    +      +      L++A + +V   
Sbjct: 369 ESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVVRLNIAQLLVVG-- 426

Query: 419 NPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 P  I A              +  +A     E L   D+++V
Sbjct: 427 --AGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLAEHLRPGDLVLV 471


>gi|172059545|ref|YP_001807197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992062|gb|ACB62981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
          Length = 468

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 145/406 (35%), Gaps = 31/406 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +     VS+DSR +  G +FVA+ G++ D H F+            V++  +     A 
Sbjct: 22  PDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGD----------VAARGAAAALVAH 71

Query: 86  IRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I   +  +
Sbjct: 72  VPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASIFAAAVGA 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             ++     +++                  L    +  V  + +  +  G  +       
Sbjct: 132 DARLATAGNLNN----------DIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAA 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N  R+H ++  T +A       +   L P +  A+  ADDAY+      A   
Sbjct: 182 PTVALVNNAQREHQEFMATVEAVALEHAAVIHALTP-DGVAVFPADDAYASIWRVAATGN 240

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                ++ +  +     +V    +  ++ I              GE    NAL AA   +
Sbjct: 241 PILDFAL-HDAERQVEAQVTGRLHGGELAIDTPAGAMTVRLRALGEHNARNALAAAAAAL 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTI 379
           A GI+ A + + LE    V GR +    +     G  +  D Y    +S+   +  +   
Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359

Query: 380 TSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
            + R++V+   G   D+G    R I         D      D  R 
Sbjct: 360 PAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|304407502|ref|ZP_07389154.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343453|gb|EFM09295.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
          Length = 444

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 137/417 (32%), Gaps = 43/417 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V S+A S  +          I V+   +  LS   +   G      +AV G  G
Sbjct: 46  KGADLVVYSTALSKDNVERKAAEELNIPVLHRAQM-LSRLMNAGKG------VAVAGAHG 98

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  + +       +I PT  I     +      +             + V   
Sbjct: 99  KTTTSSMIALVMETC-----KIDPTYIIGGEIVNVGTNAKAGKG----------EYVVAE 143

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+    L  H            TN+  DH++ ++            F   +  +  AI
Sbjct: 144 ADESDGSFLQYH------PTIAIVTNIEPDHLENYEGDFNKLKEAYVQFLHQVKPDGKAI 197

Query: 246 IYADDAYSKEVMKRAHNAGCR---VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF- 300
           +  DD   +E++        R   +++ G  Q        +     K    +  +G+   
Sbjct: 198 VCIDDTNLQEMLPSLRGGALRNDQIVTYGIDQEANYRASDLQLGDRKVSFILHRDGETLG 257

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    +PG   VYNA+     C+  G+    V E +        RF  +G       +  
Sbjct: 258 NVELSVPGRHNVYNAMATIITCLEAGLSFESVAEAIRLFRGAKRRFHVLGEK-NDILVID 316

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN- 419
           DYAH    ++  +   +  T  RI+ VF                 A   AD  I+TD   
Sbjct: 317 DYAHHPTEIQATISAAKA-TGKRIVAVFQPQRYTRTYFLLEQFSCAFGEADEVIITDIYS 375

Query: 420 PRSEDP------EKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P  E         K+   I+            + E +   I      D+++  G G 
Sbjct: 376 PAGEQQIEGVHSRKLVEMIVQNSNANTAYVPTKEEVLERLIASKKPGDLIITMGAGD 432


>gi|184201127|ref|YP_001855334.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
 gi|183581357|dbj|BAG29828.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
          Length = 468

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 154/422 (36%), Gaps = 40/422 (9%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA  +VVS+A   Q+          + V+  ++      A+ ++G+    ++AV
Sbjct: 65  DAAHVAGASTVVVSTAIREQNPELAAARGAGLRVLHRSQA----LAAAMHGR---RVIAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++ +S      + +GL          I +   D                +++  
Sbjct: 118 AGTHGKTTTSSMTAVALRAAGLRPSWA-----IGAHVADLGANAGFDAGEW----FVAEA 168

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             +  S  A                    TN+  DH+D++ + +A+  A    F + + +
Sbjct: 169 DESDGSFMAYH------------PEVAVVTNVEPDHLDHYGSAEAFHRAFDE-FSDTIRE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ--QVTISVEG 297
               +  ADD  +  + +R    G  VLS G   G  + L ++         ++   V G
Sbjct: 216 GGTLVACADDPGAARLAERRRTRGGAVLSYGTDPGADVVLSELTPHGTGTTCRIGFPVPG 275

Query: 298 KDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              + L  L  PG     +A  A     A G D   +L  L   H    RF+  G    G
Sbjct: 276 GRREALLELAVPGAHNAADAAAAFAAGCAAGADPEQLLAGLADFHGSARRFDLKGEQG-G 334

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAI 414
            R++ DYAH    +   L   R +  GR ++ +F         +       AL+LAD+A 
Sbjct: 335 VRVFDDYAHHPTEVAAALGAARDVAGGRRVLAIFQPHLYSRTREFAEAFCRALELADLAC 394

Query: 415 VTDDNPRSEDPE-KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           VTD     E PE  I    I G       +      EA+   +      DV++  G G  
Sbjct: 395 VTDVFGAREQPEPGITGATITGHARNGRVVSTPATREAVEAVVARAEPGDVVMTVGAGDV 454

Query: 471 TV 472
           T 
Sbjct: 455 TT 456


>gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 498

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 158/448 (35%), Gaps = 65/448 (14%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  D   L   +          +I+     DSR +  G +F A+ G K DGH F+P A+
Sbjct: 1   MIGVDLSRLAEWMQGRVEGDGTARISGTAVVDSRKVAPGDVFFALPGEKVDGHDFVPAAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA   VV        ++A +R    ++VV++  + L   A     +    ++AVTG++
Sbjct: 61  AAGAACAVVRRIDD--GWTAALRPGQGLIVVNDGLQALQDCARHYRTQLAIPVIAVTGST 118

Query: 125 GKSSVASFVQQ-------ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           GK+S    +         + +  G  + +IG   T+                        
Sbjct: 119 GKTSTKDLLAAAVGAQRDVMKSPGNFNNEIGLPLTLLGVQ-------------------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  V +     G         +   G  TN+G  H++   + +A   AK  L + L
Sbjct: 159 EQHQALIVEMGMRGKGQIAALCRIARPDVGLLTNIGPVHMELLGSMEAIARAKGELLQSL 218

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---------CAIHNK 288
             K   A++  +D   ++V+    ++ C V+  G   + +    +               
Sbjct: 219 SDK-GKAVVNGED---RQVVAETLSSRCPVVYAGTSPEALAHGLIAGGLNPAAPVQAIWA 274

Query: 289 QQVT---------------------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +V                         E   F+FL PLPG  QV NAL+A     A+G+
Sbjct: 275 TEVEPLGEQGSRVAGALGVFIPEQAAGYEESTFEFLLPLPGRHQVSNALLALAAAKAVGV 334

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIV 386
           D A+    L +  +   R+E    +     I   Y     ++   L     +    R++ 
Sbjct: 335 DPAVAAGGLAQARLSSLRWETRRFDCAVTLINDAYNANPAAMSAALTTAAELAGPSRLVA 394

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           V G   +          ++    A++ +
Sbjct: 395 VLGDMYELGPEAAEYHRQVGRQAAELGV 422


>gi|319440252|ref|ZP_07989408.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium variabile DSM 44702]
          Length = 505

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 164/501 (32%), Gaps = 61/501 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + +L   +  ++    ++      +  +   V  DSR + AG +++A+ G + DGH F+ 
Sbjct: 1   MIELTAGEIADITGG-TLVDGADPDTVVTGPVEFDSRRVTAGSVYMALPGARVDGHDFVG 59

Query: 62  QAIAQGAEAIVVSSAYSLQDF-------------SATIRSNTPILVVDNTRKFLSLFASR 108
            A+  GA  ++     +L +              +A+   N P  + +     +S  A  
Sbjct: 60  PALEAGAALVMAGRPTALPELLCPAVEEEQGTQRNASYLDNDPDGLGERVITAVSRLARH 119

Query: 109 ----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
               L  ++   ++ VTG++GK+S    +  +  R G +    G  +             
Sbjct: 120 STEVLVAENRLTVIGVTGSAGKTSTKDLLGAVFSRDGETIAPPGSLNNEIGHPYTVLKAG 179

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            +  YL   +S             A   G   H         G   N+G  H+    +++
Sbjct: 180 RTTKYLVAEMS-------------ARGQGHIAHLARIAPPRIGVVLNVGTAHLGEFGSRE 226

Query: 225 AYFNAKMRLFEELLP--KESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKK 281
               AK  L E L P  +   A++ ADD     +  R A          G  G   +   
Sbjct: 227 GIAQAKGELVEALPPAAEGGVAVLNADDDLVSGMAPRTAARVVYYSADQGADGTADYRAS 286

Query: 282 VCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              +    + +      EG+       + G   V NAL AA   I  G+  + V   L  
Sbjct: 287 DITLDEVARASFLLHHPEGEPVKVSLGVFGAHNVANALAAAAAAIECGLAPSEVASALTG 346

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL----KNIRTITSGRIIVVFGC--- 390
                     V T   G  +  D Y    +S+   +        T T      V G    
Sbjct: 347 YTAASANRMDVRTRPDGLTVINDSYNANPDSMRAGIDALAHAASTRTGTESWAVLGQMAE 406

Query: 391 -GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-IEA 448
            G D       I   +A    D  IV            +  + +           R ++ 
Sbjct: 407 LGEDAVGEHTGIGAYLAERGIDRLIVVG--------HGVNQDALAAAGEDNGIRTRQVDD 458

Query: 449 IRTAIEML-----NKQDVLVV 464
           +  A+ +L     +  DV++V
Sbjct: 459 VDGAVNLLTGAPTHPGDVVLV 479


>gi|312959058|ref|ZP_07773577.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
 gi|311286828|gb|EFQ65390.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
          Length = 481

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 145/430 (33%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAE--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +          +
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  +             F
Sbjct: 170 AEADESDASFL---------------HLQPLVAVVTNIDADHMATYDGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G+ +   +    V     +   T 
Sbjct: 215 LHNLPFYGLAVVCLDDPVVREILPQVKRP---TVTYGFSEDADVRAINVRQEGMQTYFTV 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
           +  + +  D    +PG   V N+L    +    G+    ++E L +   V  RF+    +
Sbjct: 272 LRPDREPLDVSVNMPGNHNVLNSLATICIATDEGVSDEAIVEGLSRFAGVGRRFQVYGQL 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +     +  DY H    +  ++K +R      R+++V+                  L 
Sbjct: 332 PVDGGDVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVNVLA 391

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQ 459
            A++ ++ +  P  E+P  I       +   I +  +++   I   +++           
Sbjct: 392 DANVLLLMEVYPAGEEP--IPGADSRKLCNSIRQRGQLDPIYIERGVDLAPIVKPLLRAG 449

Query: 460 DVLVVAGKGH 469
           D+L+  G G 
Sbjct: 450 DILLCQGAGD 459


>gi|94987547|ref|YP_595480.1| UDP-N-acetylmuramate--L-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224699|sp|Q1MPB8|MURC_LAWIP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94731796|emb|CAJ55159.1| UDP-N-acetylmuramate-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 453

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 83/427 (19%), Positives = 158/427 (37%), Gaps = 55/427 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYGK 112
           GH    QA   G  ++VV S+   +D        +   P++        L          
Sbjct: 56  GH----QAENLGDISVVVKSSAVTEDNPEIQLARQHGIPVIPRAEMLTELMRL------- 104

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+ GT GK++  S    +   +G     +     ++++  + RL          
Sbjct: 105 --RKGVAIAGTHGKTTTTSLTATVFDTAGFDPTVV-IGGVLNAYGANARLGQG-----QY 156

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++       + +                +  I    TN+  DH+DY+++ +   +A   
Sbjct: 157 LIAEADESDGSFL---------------LLLPIINVVTNIDLDHLDYYRSFEEIEHA-FV 200

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   +P     ++  DD   + V+ R +    +V++ G++       ++       +  
Sbjct: 201 TFMNNVPFYGMNVVCGDDPGVQRVLPRVNR---QVITYGFESSNHIWAEIIECGIINRFK 257

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G+   + +   PG+  + NAL A G+ + +GI     +E L     V  RFE+ G 
Sbjct: 258 VIAHGECLGEVILTQPGKHNILNALAAIGVALEVGISPKCCIEGLANFKGVGRRFEYKGE 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
              G  +  DY H    +   L+  R +   R IVV      R    + + G+    L  
Sbjct: 318 K-NGITVIDDYGHHPIEVAATLETARKVFPDRRIVV-AFQPHRFSRTQALFGEFCQVLST 375

Query: 410 ADIAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEK-----GNRIEAIRTAIEM-LNKQDV 461
            D  ++T+  P  E P   I ++ +  GI    +       + I+A+  A+   L   DV
Sbjct: 376 VDKLLLTEIYPALEKPIPGINSQNLAQGIQQISKIDVTYYPD-IDAVFHALPHVLCAGDV 434

Query: 462 LVVAGKG 468
           L+  G G
Sbjct: 435 LITLGAG 441


>gi|171316203|ref|ZP_02905426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
 gi|171098617|gb|EDT43414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
          Length = 468

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 145/406 (35%), Gaps = 31/406 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +     VS+DSR +  G +FVA+ G++ D H F+            V++  +     A 
Sbjct: 22  PDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGD----------VAARGAAAALVAH 71

Query: 86  IRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I   +  +
Sbjct: 72  VPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASIFAAAVGA 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             ++     +++                  L    +  V  + +  +  G  +       
Sbjct: 132 DARLATAGNLNN----------DIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAA 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N  R+H ++  T +A       +   L P +  A+  ADDAY+      A   
Sbjct: 182 PTVALVNNAQREHQEFMATVEAVALEHAAVIHALTP-DGVAVFPADDAYAGIWRVAATGN 240

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                ++ +  +     +V    +  ++ I              GE    NAL AA   +
Sbjct: 241 PILDFAL-HDAERQVEAQVTGRLHGGELAIDTPSGAVTVRLRALGEHNARNALAAAAAAL 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTI 379
           A GI+ A + + LE    V GR +    +     G  +  D Y    +S+   +  +   
Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADIGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359

Query: 380 TSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
            + R++V+   G   D+G    R I         D      D  R 
Sbjct: 360 PAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|303228388|ref|ZP_07315221.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516890|gb|EFL58799.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 460

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 157/435 (36%), Gaps = 59/435 (13%)

Query: 51  GNKED-GH--LFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++     QG +A+V S+A    +    A       IL   +  K +   
Sbjct: 50  GATVHIGHNADYV-----QGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     N +AV G  GK+S  S + QI         Q+ PT  I       + ++ 
Sbjct: 105 ---------TNGIAVAGAHGKTSTTSMIGQIL-----VEGQMEPTVIIGGEVDYLKGSSC 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   +    S G                    ++      TN+  DH+D+++T + 
Sbjct: 151 LGKGEYSVVEADESDGSFLK----------------LRPKTIVITNIEDDHMDHYKTMEN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA  + F E LP +  A++  D+   + VM +      + ++ G +    ++ K    
Sbjct: 195 LLNAFCQ-FVETLPVDGKAVVCGDNDNIRYVMSKVER---QFITYGLEDSNDYVAKNIHY 250

Query: 286 HNKQQV-TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVV 342
            +   V  +  +G+        +PG   V N+L +  +      +    +++ L K    
Sbjct: 251 EDSSLVYDVVHKGETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPSIVKALGKFIGA 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RFE  G  + G  +  DYAH    ++  LK  + +   R+I VF              
Sbjct: 311 KRRFETKGHVA-GVWVVDDYAHHPTEIKATLKAAKELEKHRVICVFQPHRYSRTSLLKDE 369

Query: 403 GKIALDLADIAIVTDDNPRSEDP---------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
              A   AD   +TD     EDP           I +E+ H    ++E  N + A+    
Sbjct: 370 FATAFTSADEIYMTDIYSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLA-- 427

Query: 454 EMLNKQDVLVVAGKG 468
           +++   D+++  G G
Sbjct: 428 KVVRPNDLVITMGAG 442


>gi|170700178|ref|ZP_02891196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
 gi|170134910|gb|EDT03220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
          Length = 468

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 145/406 (35%), Gaps = 31/406 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +     VS+DSR +  G +FVA+ G++ D H F+            V++  +     A 
Sbjct: 22  PDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGD----------VAARGAAAALVAH 71

Query: 86  IRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I   +  +
Sbjct: 72  VPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASIFAAAVGA 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             ++     +++                  L    +  V  + +  +  G  +       
Sbjct: 132 DARLATAGNLNN----------DIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAA 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N  R+H ++  T +A       +   L P +  A+  ADDAY+      A   
Sbjct: 182 PTVALVNNAQREHQEFMATVEAVALEHAAVIHALTP-DGVAVFPADDAYASIWRVAATGN 240

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                ++ +  +     +V    +  ++ I              GE    NAL AA   +
Sbjct: 241 PILDFAL-HDAERQVEAQVTGRLHGGELAIDTPSGAMTVHLRALGEHNARNALAAAAAAL 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTI 379
           A GI+ A + + LE    V GR +    +     G  +  D Y    +S+   +  +   
Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359

Query: 380 TSGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
            + R++V+   G   D+G    R I         D      D  R 
Sbjct: 360 PAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|254509590|ref|ZP_05121657.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
 gi|221533301|gb|EEE36289.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
          Length = 469

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 140/415 (33%), Gaps = 49/415 (11%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A      +         P++   +    L    S          +A+ GT G
Sbjct: 71  AAVVVVSTAIKPGNPELDEARAQGLPVVRRADMLAELMRLRSN---------IAIAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + + +    +G     +     I ++  + R+     +                 
Sbjct: 122 KTTTTTMMAE-LMVAGDFDPTVINGGIIHAYGSNARMGQGEWM----------------- 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++        +     F   LP    A+
Sbjct: 164 VVEADESDGSFNRLPAT---IAIVTNIDPEHMEHWGDFDQLRDG-FHEFVSNLPFYGLAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDF 302
              D A  + ++ R  +   R      Q   +  + +          I ++ +D      
Sbjct: 220 CCTDHAEVQALVGRITDRRVRTYGFNAQAD-VRAENLTYKGGVAHFDIHLQYEDKVIEGC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+ +A + + L     V  RF  VG    G  I  DY
Sbjct: 279 TLPMPGDHNVSNALSAVAVARHLGMKTAQIRDALANFGGVNRRFTKVG-EIDGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  T GR+I V                    + AD+  + +     
Sbjct: 338 GHHPVEIAAVLKAARQATEGRVIAVHQPHRYSRLSSLFDDFCTCFNDADVVAIAEVFAAG 397

Query: 423 EDP--EKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
           EDP     R +++ G+     +  R  AI       R   E     D++V  G G
Sbjct: 398 EDPIEGASRDDLVQGLIRHGHRHAR--AILSEDDLARLVREQARAGDMVVCLGAG 450


>gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
 gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 169/502 (33%), Gaps = 61/502 (12%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +    +  R   I+ + +DSR +      +F A+   + DG  +I    A+G 
Sbjct: 5   IEDIARIIGARRIGDRPAAIDWLLTDSRSLSFPEETLFFALPTKRNDGTRYIRDLYARGV 64

Query: 69  EAIVVSSAYSLQDF----------------SATIRSNTPILVVDNTRKFLSLFASRLYGK 112
              VVS     +                  +A ++    +LVV N  K L   A +   +
Sbjct: 65  RNFVVSEERLNEVGIGEPKVEDAVRQETVDTAAMQPAFNLLVVPNPLKALQKLAEQHRDR 124

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++ +TG++GK+ V  ++ Q+               T S  + ++++  P  ++   
Sbjct: 125 FQIPVIGITGSNGKTIVKEWLHQLLS--------PERMITRSPRSYNSQIGVPLSVWQMS 176

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L+           S  G  +   + IK   G  TN+G  H +   + Q     K+ 
Sbjct: 177 EQTELAILEA-----GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLA 231

Query: 233 LFEELLPKESPAIIYADDAYSKE-VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           LF+         I   DD +    V K    A     S     + +++ KV    +   +
Sbjct: 232 LFKNC----DVVIYNGDDEFINNCVGKSMLAAREIAWSRKDMERPLYISKVEKQEDSTVI 287

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +      D  F  P   +  + N+L     C+ + + +  + E + KL  V  R E    
Sbjct: 288 SYRYLDMDNTFTLPFIDDASIENSLNCLAACLYLMLPAEQITERMAKLEPVAMRLEVKEG 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +    I   Y     SL++ L     R+ + G    +            P + +    L
Sbjct: 348 KNGCLLINDSYNSDLGSLDIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQL 407

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV--AGK 467
                    N R    E+I      G+   I       +I  A          ++   G+
Sbjct: 408 V--------NSRG--IERII-----GVGNEISSCAARFSIEKAFY---PDTATLIEAIGR 449

Query: 468 GH---ETVHIVTNGEKKMSVDC 486
           G    E   I+  G +K   D 
Sbjct: 450 GELRLENEIILIKGARKFGFDA 471


>gi|85703766|ref|ZP_01034870.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217]
 gi|85672694|gb|EAQ27551.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217]
          Length = 465

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 140/413 (33%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +V+SSA    +          + VV        L          ++ +AV GT GK
Sbjct: 70  GAEVVVISSAIKPGNPELDEARKRGLPVVRRAEMLAELMRL-------KSNIAVAGTHGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V ++  + G+    I     I ++  + R+     +                  
Sbjct: 123 TTTTTLVAELLVKGGIDPTVING-GVIHAYGSNARMGQGEWM-----------------V 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA       +RL          TN+  +H+++    +         F   +P    A+ 
Sbjct: 165 VEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGDFERLRQG-FYDFVSNIPFYGLAVC 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD-FLF 304
             D    + ++ R  +          Q     +            V +  EG+  +    
Sbjct: 221 CTDHPEVQALVGRITDRRVLTYGFNAQADVRAVNLTYEKGVAHFDVALQAEGRVIEGCTL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG+  V NAL A  +   +G+ +  +   L     V  RF  VG    G  I  DY H
Sbjct: 281 PMPGDHNVSNALSAVAVARHLGMKADEIRAALASFGGVNRRFTRVG-EVDGVTIIDDYGH 339

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               +  +L+  R  T+GR+I V                    + AD+  + +     ED
Sbjct: 340 HPVEIAAVLRAARQATTGRVIAVHQPHRYTRLASLFDDFCGCFNEADVVAIAEVYAAGED 399

Query: 425 --PEKIRAEIIHGIPGFIEKGNRIEAIRT-------AIEMLNKQDVLVVAGKG 468
             P   R +++ G+     +  R  AIR          E     D++V  G G
Sbjct: 400 PIPGASRDDLVAGLIRHGHRHAR--AIRDEDDLERLVREQAGPGDMVVCLGAG 450


>gi|297242762|ref|ZP_06926700.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
 gi|296888973|gb|EFH27707.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
          Length = 601

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 99/550 (18%), Positives = 171/550 (31%), Gaps = 85/550 (15%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
            FP    +      + D+R I  G +   I GN +    ++  A  +G  A V   +Y+ 
Sbjct: 63  YFPNIDADECFTNATYDTRDITPGTLLF-IKGNFQ--SEYLLNADNKGLAAYVAEQSYAQ 119

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASFVQQIC 137
              +         L+V + +K +S+ A+  +G   E +  V  T  K     A F   I 
Sbjct: 120 YTKAVG-------LIVTDAKKAMSVLAAAFFGNPQEKLTIVGITGTKGKTTTAYFTHAIL 172

Query: 138 QRSGLSSFQIGP---TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                    +              ++ LTTP      K +      G+ ++ +E SS   
Sbjct: 173 NSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEVSSQAY 232

Query: 195 DQHRLDGIKLIAGSFTNL----------------------------------GRDHIDYH 220
             +R+ G+K    +F N+                                    DH D  
Sbjct: 233 KVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLL 292

Query: 221 QTQQAYFNAKMRLFEELLPKE-------------------SPAIIYADDAYSKEVMKRAH 261
                  N  +  F  +   E                   +      DD Y++ +     
Sbjct: 293 LQDAERNNVLVTTFARIKKDEIESDACENDNFDDIDDDRINYCAPANDDDYTELLTPDYI 352

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                             +      N  +  +     D +F   + G+F   NAL A  +
Sbjct: 353 AMPVENSESHCIAMRDSSEDDDYEDNDYEEDVHYCPID-EFALSIAGDFNYENALAAIAI 411

Query: 322 CIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +GI+    L  L  +  V    R E            VDYAH   S + +L  +   
Sbjct: 412 AGELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIAVVDYAHNYISTKSVLDFVEER 471

Query: 380 TSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                  I ++ G  GD+   +R  + + A +  +  I T ++  +ED   I  ++   +
Sbjct: 472 YGKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQSYV 531

Query: 437 PGFIE----KGNRIEAIRTAIEML----NKQ---DVLVVAGKGHETVHIVTNGEKKMSVD 485
                      +R EAI  A         K    ++L+  GKG E              D
Sbjct: 532 TDPNVSSRIIIDRAEAIEYAYNDAANSEQKNGRLNILLAIGKGDERWIKNKRKHVPYEGD 591

Query: 486 CDIIREILGL 495
             +I+ + GL
Sbjct: 592 SFVIKRLFGL 601


>gi|157828210|ref|YP_001494452.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932913|ref|YP_001649702.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           Iowa]
 gi|166224724|sp|A8GRB9|MURC_RICRS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029027|sp|B0BWS0|MURC_RICRO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157800691|gb|ABV75944.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908000|gb|ABY72296.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia rickettsii str.
           Iowa]
          Length = 485

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 143/436 (32%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL        + I+    +N+ T          
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLC------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++  +    A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDEITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V        I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKV-AEYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            +    ADI  +TD     E+P          +KI     H    F+ + +  +A+   I
Sbjct: 389 MLCFADADILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELD--DAVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIMMGAGN 462


>gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
 gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
          Length = 824

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 165/457 (36%), Gaps = 54/457 (11%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+I Q+       +  +I  + +DSR +      +F A+  ++ DGH +I +   +G 
Sbjct: 5   IEEVITQIGAQRYGSKSAQIGFLLTDSRSLCFPEETLFFALKTDRNDGHHYISELYRRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS   S+      +      L V N  K L   A     +    I+ +TG++GK+ 
Sbjct: 65  RNFVVS---SVPVDYEHLYPEANFLRVLNPCKALQRLAKCHREEFHIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++     ++L           V      
Sbjct: 122 VKEWLYQLLSPQ--------FFVTRSPRSYNSQVGVALSVWLLNE-----ETQVGIFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G        I+      TN+G  H +   + +     KM L    L      +  A
Sbjct: 169 ISEPGEMAALQHMIQPTIAVLTNIGDAHQENFASMEDKCREKMIL----LKDAEILVYPA 224

Query: 249 DDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD   ++V+  +   G ++  S+  +    ++K V        +T      +  F  P  
Sbjct: 225 DDPIIQKVVNDSDLRGKKLAWSMSDKSAPFYIKTVEKKATMTTITYVYHEHEDWFSIPFI 284

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTS 366
            E  V +A+  A + + +G+  + + E +++L  V  R E V     G  +  D Y    
Sbjct: 285 DEASVADAIECAVVALEMGMSMSALDERMQQLEPVAMRLE-VKEGQHGCTLINDSYNSDI 343

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           NSL++ L  +      +                        + +   I++D +     P 
Sbjct: 344 NSLDIALDFMNRRPDQQ------------------------NRSRTLIISDIDQSGRQPS 379

Query: 427 KIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           ++  E     +  G+   I  G ++ A R  IEM  K
Sbjct: 380 ELYKEVSNLAVKRGVSQLIGIGQQLSANRNLIEMPKK 416


>gi|312136106|ref|YP_004003444.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
 gi|311776157|gb|ADQ05644.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
          Length = 455

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 152/410 (37%), Gaps = 35/410 (8%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G E ++ ++A S +D    + +    L +    +FL L          +N++A++GT G
Sbjct: 59  NGDETVIYTAAIS-KDNPELLAAKRMNLKIYERAEFLGLLMKDF-----KNVIAISGTHG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I +++  +     PT  + +F +          ++  +  YL  +   +V
Sbjct: 113 KTTTTSMIGYILKKANYN-----PTVLVGAFVKQL-----GGNFVIGSKEYLVVEACEYV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                G   N+  DH+DY +   +  N+  + F + +P     I
Sbjct: 163 DS-----------FLKFNPTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPASGFLI 210

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              DD   K+++   +     + +      F         + +  V  + +         
Sbjct: 211 ANCDDKNVKDIISELNTQIICISTKEKTDIFADNISCSDGYYEFDVKNNNDKILAHIKLN 270

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   VYNAL A  +   +G++S  +   + +      R E  G    G  +Y DYAH 
Sbjct: 271 IPGFHNVYNALAAFAVASKLGVESITIEHAIAEFCGASRRLEKAG-EFDGICLYDDYAHH 329

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              ++  L  ++ ++ G++  +F                 +L LAD  I+TD     E  
Sbjct: 330 PTEIKASLNTLKKLSQGKVFAIFQPHTFSRLKNLLNEFAESLSLADKVIITDVYAAREKN 389

Query: 426 E-KIRAEI----IHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
              I +E     +  I    E  +  E I    ++   K D++   G G 
Sbjct: 390 NFGITSENLCLKLKEIGVDCEYISSFEDIACYVVKEAKKGDIIATIGAGD 439


>gi|254428710|ref|ZP_05042417.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
 gi|196194879|gb|EDX89838.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
          Length = 474

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 147/434 (33%), Gaps = 51/434 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G + D GH      I  GA+ +V S+A + ++          I VV   +  L+      
Sbjct: 61  GVRVDIGHR--ASNID-GADVVVTSTAVNTENLEVAAAHERRIPVVPRAQM-LAELMRFR 116

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +G      +AV GT GK++  S    I   +GL      PT  I                
Sbjct: 117 HG------IAVAGTHGKTTTTSLTAAIMAEAGLD-----PTFVIGGRLNSAGTNARLGQS 165

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               ++       + +                ++ ++   TN+  DH+  +    A    
Sbjct: 166 RY-LVAEADESDASFL---------------HLQPMSAIVTNIDADHMHTYGGDFAQLEN 209

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
               F   LP    A++  DD   ++++ R +    +V+  G+ +   +  + V      
Sbjct: 210 TFIEFLHNLPFYGVAVMCVDDPVVRKLLPRVNR---QVIRYGFSEDADLRAENVRQDGMV 266

Query: 289 QQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                +  EG+  +    +PG   V NAL A  +    G D   ++  L     V  RF+
Sbjct: 267 THFRVVRAEGEPLEVSLNMPGRHNVLNALAAIAVSADEGADDEAIIRGLNNFTGVGRRFD 326

Query: 348 FVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG 403
             G          +  DY H    +   +  IR      R+ ++F               
Sbjct: 327 VQGEYHFEGGSATLVDDYGHHPREVAATIDAIREGWPERRLAMLFQPHRYTRTQDLYEDF 386

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GI-PGFIEKGNRIEAIRTAIEM 455
              L   D+ ++ +     EDP        +   +   G+ P F++  +++  +      
Sbjct: 387 VEVLSGVDVLLMLEVYAAGEDPIPGADARALCRSLRKRGLEPVFVDDPDKLAGLLA--SQ 444

Query: 456 LNKQDVLVVAGKGH 469
           L   D+LV  G G+
Sbjct: 445 LQDGDLLVTQGAGN 458


>gi|188585042|ref|YP_001916587.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349729|gb|ACB83999.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 465

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 148/424 (34%), Gaps = 57/424 (13%)

Query: 77  YSLQDFSATIRSNTPILVVDNTR--------KFLSLFASRLYGKHPENILAVTGTSGKSS 128
             L  +S  I  + P L+    R        + L+   +  YG      +A+TG  GK++
Sbjct: 65  VDLVIYSTAIPGDNPELLAAKQRGISLWHRSELLAELINSRYG------IAITGAHGKTT 118

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  I + +      I     + +F  + R+             Y+ ++        
Sbjct: 119 TTSMLSLILEEASADPTCI-IGGELPNFGSNARVGDSE---------YVVAEACE----- 163

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S H   ++            TN+  DH++++           R F E +       IY+
Sbjct: 164 -SDHSFLRY-----SPQIAVITNIEADHLEHYNGSFDQLLKSYRQFIENIDDSGKVFIYS 217

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           +  Y   +++   +  C+         F     +       + TI  +  D F     +P
Sbjct: 218 ECEYHDYLLE-GMSKNCKTFGFSQDADF-RATDLKLNKGTTEFTIESDLADSFKVELMVP 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  + NAL AA + + + I    +   L+K      RF  +G   +G  I  DYAH   
Sbjct: 276 GEHNILNALAAASVALDLKISPTAIKRALQKFTGAKRRFMEIG-QLQGATIVDDYAHHPT 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
            ++  LK  +  +  ++I +F                 + + AD  I+       ED   
Sbjct: 335 EIKATLKTAQEQSDNKVIAIFQPHRFTRTQYFMDDFASSFEEADTVILHKVFAAGEDEIP 394

Query: 426 ----EKIRAEIIHGIPGF-IEKGNRIEAIRTAIE-MLNKQDVLVVAGKG----------H 469
               + ++ +I   +PG  +   + +E I   +  +++K D ++  G G           
Sbjct: 395 GANSKNLKDKIKENVPGLEVYVTDDMEDIAEIVSNIVDKGDYVITMGAGDIWKVAHWLVD 454

Query: 470 ETVH 473
           E   
Sbjct: 455 EDYQ 458


>gi|251772200|gb|EES52770.1| UDP-N-acetylmuramate--alanine ligase [Leptospirillum
           ferrodiazotrophum]
          Length = 471

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 141/409 (34%), Gaps = 43/409 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVSSA    +          I +V       SL        +P   +AVTG+ GK++  
Sbjct: 70  VVVSSAIRHSNPEWIAAVTRGIPIVHRGEMLASLV-------NPSYGIAVTGSHGKTTTT 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  +   +GL    +     +SSF        P    + ++  +++    +  S    
Sbjct: 123 SMVASLLVSAGLDPTCV-VGGRVSSF--------PGCALVGRSRYFVTEADESDGSFM-- 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +       TN+ R+H+D++ T      A    + +   +    I+  DD
Sbjct: 172 ----------KLAPRLRIVTNIDREHMDFYGTFDNLIQA-FSTYLDTGDEGGIGILCIDD 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
                +++R        L+ G         + +          + V+G  +  F   +PG
Sbjct: 221 PGVAALIERISTIP---LTYGLSSAARVRAENIVHEGVGSSFDVRVDGACWGRFSLHVPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A    I + I   L+ + L +   V  RF  +G    G  +  DY H    
Sbjct: 278 MHNILNALAAICAGICLEISPDLMRQALSRFESVGRRFTLLG-ERDGVIVVDDYGHHPTE 336

Query: 369 LEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
           +   L   R    GR IV VF                 +   AD  +VT+     EDP  
Sbjct: 337 IRATLAAARLAYPGRRIVAVFQPHRFTRVRDLQNAFIESFSDADKILVTEIYSAGEDPIP 396

Query: 426 ----EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKGH 469
               E +  ++       ++   R +  +     ML   D+L+  G G 
Sbjct: 397 GIGSEGLYRKMRDRWDDRVDYEPRRDRWVERLNGMLKPGDLLLTLGAGD 445


>gi|301165435|emb|CBW25006.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Bacteriovorax marinus SJ]
          Length = 457

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 163/440 (37%), Gaps = 48/440 (10%)

Query: 51  GNKEDGHLFIPQA-IAQ----GAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRK 100
           G K  G      A +A+    GA+  V   + ++ D     +S+ I    P ++    ++
Sbjct: 31  GYKVSGSDIAESATVAKLRKLGADVFVGHKSENITDATVMVYSSAIDDTNPEVIAAKAKR 90

Query: 101 FLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              +  + +  +       LA+ GT GK++  SF+  I Q S      I     I     
Sbjct: 91  LPIMRRAEMLAELMRLKKGLAIAGTHGKTTTTSFLATILQESKYDPTYI-----IGG--- 142

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                      + K L   +  G     V  +        L  +  I    TN+  DH+D
Sbjct: 143 -----------IVKNLDGHAKVGKGEFLVAEADESDGSFLL--LNPIMSVVTNIDNDHMD 189

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFI 277
           ++ + +A   +    F   +P      + A D     + K         ++ G +     
Sbjct: 190 HYGS-EANLLSSFTEFINKVPFYGLTALNAHDERLMALTKEVKKPW---VTFGVETEADF 245

Query: 278 HLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             + +   +N     +   G K  +    +PG+  + N+L A  L   +G+    + + +
Sbjct: 246 EARDIRYENNITIYDLYHSGEKKIEIRITIPGKHNILNSLGAIALAFNMGVPFEEIAKSI 305

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            K   V  RF+ +        +  DYAH    +++ LK ++     + IVV        +
Sbjct: 306 IKFDGVGRRFQTLVAKDN-FEVIDDYAHHPTEIDVTLKAMKETRPNKKIVVVFEPHRYSR 364

Query: 397 GKRPIMGKI-ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI 449
            +      +   + AD   ++   P SE P      +++ A+I    P  ++K + IE I
Sbjct: 365 TRDCWDSFLHCFNSADTVYISPIYPASEKPIPGIEADRLIADINKLHPDLVKKLDSIENI 424

Query: 450 RTAIEMLNKQDV-LVVAGKG 468
            + I+   +++V LV  G G
Sbjct: 425 DSIIDNYKEENVTLVTLGAG 444


>gi|260434248|ref|ZP_05788219.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260418076|gb|EEX11335.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 469

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 139/413 (33%), Gaps = 45/413 (10%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A      +         P++   +    L            ++ +A+ GT G
Sbjct: 71  AAVVVVSTAIKPGNPELDGARALGLPVVRRADMLAELMRL---------KSNIAIAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + + +    +G     +     I ++  + R+     +                 
Sbjct: 122 KTTTTTMMAE-LMVAGDFDPTVINGGVIHAYGSNARMGQGEWM----------------- 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++         A    F   +P    A+
Sbjct: 164 VVEADESDGSFNRLPAT---IAIVTNIDPEHMEHWGDFDR-LRAGFHDFVSNIPFYGLAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--- 302
              D A  + ++ R  +   R      Q   +    +          I ++ +D      
Sbjct: 220 CCTDHAEVQALVGRITDRRVRTYGFNAQAD-VRAVNLTYKGGIAHFDIHLQYEDTVIEGC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+ +A + + L     V  RF  VG    G  I  DY
Sbjct: 279 TLPMPGDHNVSNALSAVAVARHLGMKTAQIRDALANFGGVNRRFTKVG-EVNGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  T GR+I V                    + AD+  + +     
Sbjct: 338 GHHPVEIAAVLKAARQATEGRVIAVHQPHRYSRLSNLFEDFCACFNDADVVAIAEVFSAG 397

Query: 423 EDP--EKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468
           EDP     R +++ G+     +  R      +  R   E     D++V  G G
Sbjct: 398 EDPIEGASRDDLVQGLIRHGHRHARALLDEGDLERLVREQARPGDMVVCLGAG 450


>gi|188589349|ref|YP_001919591.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum E3
           str. Alaska E43]
 gi|229486481|sp|B2UXS3|MURC_CLOBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188499630|gb|ACD52766.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 460

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 146/444 (32%), Gaps = 55/444 (12%)

Query: 51  GNKEDGHLFIPQAIAQ-----GAEAIVVSSAYSLQD-----FSATIRSNTPILVVD---- 96
           G K  G  F    I +     GA+  +  S  +++D     ++A I  N P L+      
Sbjct: 34  GYKVSGSDFKESEILKKLRLSGADIYIGHSEKNIKDVDLVVYTAAIPENNPELIYAKENN 93

Query: 97  -NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTI 153
            +         + + G   +  +A++G  GK++  S +  I  ++ L    +  G    I
Sbjct: 94  IDLMNRAEFLGNIMKGH--KYNVAISGAHGKTTCTSMLSNITLKANLDPTILVGGELDII 151

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +                S+LS                            G   N+ 
Sbjct: 152 GGNFRIGSSDYFITEACEYKRSFLSFF-----------------------PYVGVILNID 188

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH+DY++          + F +L+P +   I Y  D+  KE++ +A    C  LS G++
Sbjct: 189 ADHLDYYKDIDEITETFGQ-FADLIPNDGYLIGYIGDSRVKEILSKAK---CNTLSYGFE 244

Query: 274 GKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +  + +                 K FD     PGE  + NAL +  + +   ++   
Sbjct: 245 NADVTARNITFNEKGCASFDVYKHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDD 304

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           ++  L +      RFE+ G    G  +  DYAH    ++  L   + I   +   VF   
Sbjct: 305 IICGLSECKGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVFQPH 363

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNR 445
                         A   AD  ++ D     E    + +    G+             + 
Sbjct: 364 TYTRTKTLFDEFTDAFFDADEVVLMDIYAAREKDTGLVSSNDLGVALRAKGVKCTNVHSH 423

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGH 469
            EA+          D+L+  G G 
Sbjct: 424 DEALEYLKNSAKPNDLLLTVGAGD 447


>gi|303327347|ref|ZP_07357788.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302862287|gb|EFL85220.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 457

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 142/423 (33%), Gaps = 48/423 (11%)

Query: 65  AQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKFL-----SLFASRLYGKHP 114
             GA   V  +A ++ D         I  + P LV    R         + A  +  +  
Sbjct: 48  ELGARVAVGHAAENVGDVQVLVKSTAIGDDNPELVEGRRRNIAIIPRAEMLAELMRLRQG 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S    I   +GL    I     ++ +  +  L           +
Sbjct: 108 ---IAIAGTHGKTTTTSLTASIFDTAGLDPTVI-IGGRLNVYGTNAHLGHGD-----YLI 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                +  I    TN+  DH+D++++++A   A ++ F
Sbjct: 159 AEADESDGSFLC---------------LLPIINVVTNVDEDHLDHYKSREAIDAAFVQ-F 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     ++  DD   + ++ R       VL+ G+               + +  + 
Sbjct: 203 MNNVPFYGINVVCGDDPGVRALLPRVKRP---VLTYGFAADNHLRAVPLESGLRSRFEVW 259

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            E +   +   P PG   + NAL A G  +   I        L     V  RFEF G   
Sbjct: 260 REDEKLGEVSLPQPGRHNILNALAAIGAAMEADIAFERCARGLGGFGGVGRRFEFKGEK- 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADI 412
            G  +  DY H    +   L   R +  GR IV  F                   D  D 
Sbjct: 319 DGVTVVDDYGHHPAEIAATLATARQVFPGRRIVAAFQPHRFSRTQAHFGEFCKVFDQVDE 378

Query: 413 AIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVA 465
            ++T+    SE   P      +  G+        R     +A+  A+ E+L   DVL+  
Sbjct: 379 VLLTEIYAASEKPIPGVSGQSLAQGVQQVSTTPVRYFQTLDALAQALPEVLRPGDVLLTL 438

Query: 466 GKG 468
           G G
Sbjct: 439 GAG 441


>gi|303230738|ref|ZP_07317485.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514498|gb|EFL56493.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 460

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 157/435 (36%), Gaps = 59/435 (13%)

Query: 51  GNKED-GH--LFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++     QG +A+V S+A    +    A       IL   +  K +   
Sbjct: 50  GATVHIGHNADYV-----QGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     N +AV G  GK+S  S + QI         Q+ PT  I       + ++ 
Sbjct: 105 ---------TNGIAVAGAHGKTSTTSMIGQIL-----VEGQMEPTVIIGGEVDYLKGSSC 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   +    S G                    ++      TN+  DH+D+++T + 
Sbjct: 151 LGKGEYSVVEADESDGSFLK----------------LRPKMIVITNIEDDHMDHYKTMEN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA  + F E LP +  A++  D+   + VM +      + ++ G +    ++ K    
Sbjct: 195 LLNAFCQ-FVETLPVDGKAVVCGDNDNIRYVMSKVER---QFITYGLEDSNDYVAKNIHY 250

Query: 286 HNKQQV-TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVV 342
            +   V  +  +G+        +PG   V N+L +  +      +    +++ L K    
Sbjct: 251 EDSSLVYDVVHKGETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPSIVKALGKFIGA 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RFE  G  + G  +  DYAH    ++  LK  + +   R+I VF              
Sbjct: 311 KRRFETKGHVA-GVWVVDDYAHHPTEIKATLKAAKELEKHRVICVFQPHRYSRTSLLKDE 369

Query: 403 GKIALDLADIAIVTDDNPRSEDP---------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
              A   AD   +TD     EDP           I +E+ H    ++E  N + A+    
Sbjct: 370 FATAFTSADEIYMTDIYSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLA-- 427

Query: 454 EMLNKQDVLVVAGKG 468
           +++   D+++  G G
Sbjct: 428 KVVRPNDLVITMGAG 442


>gi|238650471|ref|YP_002916323.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia peacockii str.
           Rustic]
 gi|259509781|sp|C4K124|MURC_RICPU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238624569|gb|ACR47275.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia peacockii str.
           Rustic]
          Length = 485

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 144/436 (33%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL        + I+    +N+LT          
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLC------PTVINGGIINNKLTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++  +    A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDEITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V        I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKV-AEYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            +    ADI  +TD     E+P          +KI     H    F+ + +  +A+   I
Sbjct: 389 MLCFADADILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELD--DAVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIMMGAGN 462


>gi|149202203|ref|ZP_01879176.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. TM1035]
 gi|149144301|gb|EDM32332.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. TM1035]
          Length = 467

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 138/413 (33%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V+SSA    +          + VV        L          ++ +AV GT GK
Sbjct: 70  GAAVVVISSAIKPGNPELDEARKRGLPVVRRAEMLAELMRL-------KSNIAVAGTHGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V ++  + G+    +     I ++  + R+     +                  
Sbjct: 123 TTTTTLVAELLVKGGIDPTVVNG-GIIHAYGSNARMGQGEWM-----------------V 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA       +RL          TN+  +H+++    +         F   +P    A+ 
Sbjct: 165 VEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGNIERLRQG-FYDFVSNIPFYGLAVC 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD-FLF 304
             D    + ++ R  +          Q     +            V +  EG+  +    
Sbjct: 221 CTDHPEVQALVGRITDRRVMTYGFNAQADVRAVNLHYEKGVAHFDVALQAEGRMIEGCTL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I  DY H
Sbjct: 281 PMPGDHNVSNALSAVAVARHLGMKGDEIRTALASFGGVNRRFTRVG-EVNGVTIIDDYGH 339

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               +  +L+  R  T+GR+I V                    + AD+  + +     ED
Sbjct: 340 HPVEIAAVLRAARQATTGRVIAVHQPHRYTRLSSLFDDFCGCFNEADVVAIAEVYAAGED 399

Query: 425 --PEKIRAEIIHGIPGFIEKGNRIEAIRT-------AIEMLNKQDVLVVAGKG 468
             P   R +++ G+     +  R  AIR          E     D++V  G G
Sbjct: 400 PIPGASRDDLVAGLIRHGHRHAR--AIRDEDDLERLVREQAGPGDMVVCLGAG 450


>gi|319764371|ref|YP_004128308.1| udp-n-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|330826590|ref|YP_004389893.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
 gi|317118932|gb|ADV01421.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|329311962|gb|AEB86377.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
          Length = 477

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 137/430 (31%), Gaps = 51/430 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  QGA+A+V S+A    +          I VV      L+       G    
Sbjct: 56  GH---AAAHIQGADAVVTSTAVQQDNPEVLAARERKIPVVPRAVM-LAELMRLRKG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ G  GK++  S V  +   +GL      PT  I                      
Sbjct: 108 --IAIAGAHGKTTTTSLVASVLAEAGLD-----PTFVIGGRLNSAGTNAK---------- 150

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               QG   V     S     + L     +    TN+  DH++ +             F 
Sbjct: 151 --LGQGEYIVVEADESDASFLNLL----PVMAVVTNIDADHMETYGHDFGRLKQAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             +P    AI+  D+   ++++    +  C V S G  +G  +    V A+  +   ++ 
Sbjct: 205 HRMPFYGTAILCVDNPAIRDIL---PSVTCPVTSYGLSEGAEVRALDVRAVGTQMHFSVQ 261

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D D +  L GE  V NAL A  +   + +    VL  L     V  RF+  G
Sbjct: 262 RRNGVTLPDLDVVLNLAGEHNVLNALAAIAVATELNVPDEAVLRALAGFTGVGRRFQRHG 321

Query: 351 ----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKI 405
                +     +  DY H    +   +   R    GR +V+ F                 
Sbjct: 322 DLPAQDGGRFTLIEDYGHHPVEMAATMAAARGAYPGRRLVLAFQPHRYSRTRDCFEDFVK 381

Query: 406 ALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            L  AD  ++T+     E P          RA  + G    +   +  +  +        
Sbjct: 382 VLGTADAVLLTEVYAAGEAPIVAADGRSLARALRVAGAVEPVFIDDVADMPQRIAASAKD 441

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 442 GDVVLCMGAG 451


>gi|26988072|ref|NP_743497.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida KT2440]
 gi|37999638|sp|Q88N75|MURC_PSEPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24982796|gb|AAN66961.1|AE016324_11 UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida KT2440]
 gi|313500436|gb|ADR61802.1| MurC [Pseudomonas putida BIRD-1]
          Length = 482

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 148/430 (34%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAT--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG   T +        +          +
Sbjct: 119 --VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  ++            F
Sbjct: 170 AEADESDASFL---------------HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              LP    A++  DD   +E++ +        ++ G+ +   I    V     +   T+
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRP---TVTYGFSEEADIRAINVRQQGMQTHFTV 271

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
               ++  +    +PG   V NAL    +    GI    +++ L     V  RF+    +
Sbjct: 272 LRRDREPLEVSVNMPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQGVGRRFQVYGEL 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K +R    S R+++V+                  L 
Sbjct: 332 PVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRTRDLYDDFVQVLG 391

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
            A++ ++ +  P  E+  P     ++ H I       P +IE+G   E       +L   
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERG--AELAPLVKPLLRAG 449

Query: 460 DVLVVAGKGH 469
           D+L+  G G 
Sbjct: 450 DILLCQGAGD 459


>gi|239813927|ref|YP_002942837.1| UDP-N-acetylmuramate--L-alanine ligase [Variovorax paradoxus S110]
 gi|259509785|sp|C5CNF5|MURC_VARPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239800504|gb|ACS17571.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus S110]
          Length = 485

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 149/434 (34%), Gaps = 58/434 (13%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A A   GA+A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAAAHIDGADAVVTSTAVQSDNPEVLAAREKRIPVVPRALM-LAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  +   +GL      PT  I                L  A + 
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLDAAGLD-----PTFVIGGR-------------LNSAGAN 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  ++ VEA     D   L+ +  +    TN+  DH++ +    A        F  
Sbjct: 149 AQLGSGDYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFAKLKKAFVDFLH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P    AI+  DD   ++++       C V S G+ G+   ++ +       Q+  + +
Sbjct: 206 RMPFYGVAILCTDDPAVRDIVAEVT---CPVTSYGF-GEEAQVRAIDVRAVGGQMHFTAQ 261

Query: 297 GK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE--- 347
            +      D   +  LPGE  V NAL    + + +GI    V   L     V  RF+   
Sbjct: 262 RRNGVTLPDLPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYG 321

Query: 348 ---FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMG 403
                G  +    +  DY H    +   +   R    GR +V+ F               
Sbjct: 322 EVAAQGEPAGSFTVIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFEDF 381

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------AIRTAI-E 454
              +  AD  ++ +     E P  I A     +   +    ++E        A+  AI +
Sbjct: 382 VKVIGNADAVLLGEVYAAGEPP--IVAADGRTLARALRVAGKVEPVFVDDIGAMPQAILD 439

Query: 455 MLNKQDVLVVAGKG 468
                DV++  G G
Sbjct: 440 NARAGDVVLCMGAG 453


>gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056]
 gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056]
          Length = 828

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 94/497 (18%), Positives = 175/497 (35%), Gaps = 54/497 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +    +      I+ + +DSR +      +F A+   + DG  +I     +G 
Sbjct: 5   IEDIARIIGARRIGDTPAAIDWLLTDSRSLSFPEETLFFALTTKRNDGTRYIRDLYTRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              VVS     +  +   + +T  +LVV N  K L   A +   +    ++ +TG++GK+
Sbjct: 65  RNFVVSEEGLKEVETFNFQPSTFNLLVVPNPLKALQKLAEQHRDRFQIPVIGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+               T S  + ++++  P  ++     + L+         
Sbjct: 125 IVKEWLHQLLS--------PERVITRSPRSYNSQIGVPLSVWQMNGQTELAILEA----- 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+         I  
Sbjct: 172 GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNC----DVVIYN 227

Query: 248 ADDAYSKE-VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD +    V K   +A     S     + +++ KV    +   V+      D  F  P 
Sbjct: 228 GDDEFINNCVGKSMLSAREIAWSRKDMERPLYINKVEKQEDSTVVSYRYLDMDNTFTLPF 287

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             +  + N+L     C+ + + +  + E + KL  +  R E     +    I   Y    
Sbjct: 288 IDDASIENSLNCLAACLYLMLPAEQITERMAKLEPIAMRLEVKEGKNGCLLINDSYNSDL 347

Query: 367 NSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-E 423
            SL++ L     R+ + G    +            P + +    L         N R  E
Sbjct: 348 GSLDIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLV--------NSRGIE 399

Query: 424 DPEKIRAEIIHGIPGF-IEK---GNRIEAIRTAIEMLNKQDVLVVAGKGH---ETVHIVT 476
               + +EI      F IEK    +   A+  AI            GKG    E   I+ 
Sbjct: 400 RIIGVGSEISSCAARFNIEKAFYPD-TAALTEAI------------GKGELRLENEIILI 446

Query: 477 NGEKKMSVDC--DIIRE 491
            G +K   D   +++ +
Sbjct: 447 KGARKFGFDELTEVLEK 463


>gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA2]
          Length = 485

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 121/389 (31%), Gaps = 45/389 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L   +   P+    +   +V  D+R +  G +F+A+ G + DGH F   A   GA 
Sbjct: 5   DVATLAQWVEAAPVNDSAQVGPDVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGK 126
           A++V+     Q          P LVVD+ +  LS  A  +     +    I+A+TG+SGK
Sbjct: 65  AVLVTRRTDAQ---------LPHLVVDDGQAGLSRLARHVVATERERGMRIIALTGSSGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + QI +  G +   +G  +           +  +  +L                
Sbjct: 116 TSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSE------------- 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G        +        N+G  H+    +++    AK  + E L   +  A++
Sbjct: 163 MGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSV-DGWAVL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D     +  R                         +     +  + + ++  +  + 
Sbjct: 222 NAADTLVAGMAPRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGES 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAI-----------GIDSALVLEHLEKLHVVPGR--FEFV 349
            +  P       A   A    A             ID   V    E L     R      
Sbjct: 282 TWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQ 341

Query: 350 GTNSRGGRIY--VDYAHTSNSLEMILKNI 376
                 G +     Y    +S+   L  +
Sbjct: 342 LRERADGLVLVEDCYNANPDSMAASLTAM 370


>gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM
           22836]
          Length = 823

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 133/371 (35%), Gaps = 29/371 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +   P    E  I+ + +DSR +      +F A+     DGH +I +    G 
Sbjct: 5   IHQVAKIIDAMPTDLNETAISILLTDSRQVFFPDETLFFALKTKNNDGHRYISELYELGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS              +   LVV +T   L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSDLQP----EWEEYEDANFLVVVHTLFALQRLAAYHRNQFNVPVIGITGSNGKTV 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL--SSQGVTHVS 186
           V  ++ Q+               T S  + ++++  P  ++   + + L     GV+   
Sbjct: 121 VKEWLYQVL--------HHDFNITHSPRSYNSQIGVPLSVWQMNSHTQLGVFEAGVSQPE 172

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
             A    +       I    G FTN+G+ H +  ++ +     K+ LF          I 
Sbjct: 173 EMAKLEAI-------INPTIGIFTNIGQAHQEGFKSMKQKCLEKLELFINC----DVIIC 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             ++    E M+ A  +  R+     G     +H+ KV  + N   +  S+ G    F  
Sbjct: 222 EEENELVDECMEIACLSHKRLTWSRKGSNKSPLHIMKVEKLGNSTTIHYSILGMASQFTI 281

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P      + NA+      I + +    + + +  L  V  R +     +    I   Y  
Sbjct: 282 PFADNAAIENAIQVLATAIYLHLPLPDINQRMADLEPVAMRLDVRQGKNNTILINDTYNS 341

Query: 365 TSNSLEMILKN 375
             NSL + L  
Sbjct: 342 DINSLGIALDF 352


>gi|33598261|ref|NP_885904.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella parapertussis
           12822]
 gi|33603172|ref|NP_890732.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella bronchiseptica
           RB50]
 gi|44888184|sp|Q7W4B5|MURC_BORPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|44888186|sp|Q7WFS3|MURC_BORBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33566819|emb|CAE39034.1| UDP-N-acetylmuramate--alanine ligase [Bordetella parapertussis]
 gi|33568803|emb|CAE34561.1| UDP-N-acetylmuramate--alanine ligase [Bordetella bronchiseptica
           RB50]
          Length = 468

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 101/434 (23%), Positives = 148/434 (34%), Gaps = 55/434 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA AIV S+A +  +          I VV      L+       G    
Sbjct: 56  GHDRANVA---GAGAIVTSTAVAGDNPEVLAARAARIPVVPRAVM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +    GL      PT  I                L  A +
Sbjct: 108 --IAVAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGGR-------------LTSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA     D   L+ +  +    TN+  DH+D +    A   +    F 
Sbjct: 148 NARLGQGEYIVVEADES--DASFLNLL-PVMAIVTNIDADHMDTYGHDVARLKSAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    AI+ ADDA  +E+M         + + G         + V A   + + T+ 
Sbjct: 205 QRLPFYGSAILCADDANVREIMPFVSRP---ITTYGLSPDAQVCAQDVQADGTRMRFTVQ 261

Query: 295 VEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-- 347
              +D           LPG   V NAL A  +   +G+D A + E L     V  RF   
Sbjct: 262 RRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQW 321

Query: 348 ---FVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPI 401
               V     GG   +  DY H    +   L   R     R IV+ F             
Sbjct: 322 GDLPVPAAHGGGTFTLVDDYGHHPVEMAATLAAARGAWPQRRIVLAFQPHRYTRTRDCFE 381

Query: 402 MGKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                L  AD  ++T+     E P          RA  + G    +   +  E  +  ++
Sbjct: 382 DFVRVLGSADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAILD 441

Query: 455 MLNKQDVLVVAGKG 468
            +   DV+VV G G
Sbjct: 442 FVRDGDVVVVMGAG 455


>gi|325202773|gb|ADY98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240149]
          Length = 436

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 139/394 (35%), Gaps = 34/394 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ + +DSR I+AG +F A+ G + D H F+                 +        R
Sbjct: 6   KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 53

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +       L VD+T   L   A          +  +TG+ GK++V   +  + +R    
Sbjct: 54  EDCVAMDGALKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRR---R 110

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLDGI 202
                  +T  +F           I L   L  L+ +     + +  +  G         
Sbjct: 111 FGDNAVLATAGNFNNH--------IGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIA 162

Query: 203 KLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           K  A    N  R H+            AK  +++ L   +  A+I  +DA          
Sbjct: 163 KPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGL-CSDGMALIPQEDANMAVFKTATL 221

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N   R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L
Sbjct: 222 NLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAAL 279

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +A G+    V E L+    + GR   V +  +G  +  D Y    +S++  +  +  + 
Sbjct: 280 SLAAGLSLNDVAEGLKGFSNIKGRLN-VKSGIKGATLIDDTYNANPDSMKAAIDVLARMP 338

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           + RI V+   G   +     +  ++     D  I
Sbjct: 339 APRIFVMGDMGELGEDEAAAMHAEVGAYARDQGI 372


>gi|34580726|ref|ZP_00142206.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia sibirica 246]
 gi|28262111|gb|EAA25615.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia sibirica 246]
          Length = 485

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 142/436 (32%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL        + I+    +N+ T          
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLC------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++  +    A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V        I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKV-AEYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 ADI  +TD     E+P          +KI     H    F+ + +  +A+   I
Sbjct: 389 MFCFADADILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELD--DAVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIMMGAGN 462


>gi|157964317|ref|YP_001499141.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia massiliae MTU5]
 gi|167017283|sp|A8F108|MURC_RICM5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157844093|gb|ABV84594.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia massiliae MTU5]
          Length = 485

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 145/436 (33%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL        + I+    +N+ T          
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLC------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++  +    A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYKDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCTDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V   ++   I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKVAEYNK-ASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            +    ADI  +TD     E+P          +KI     H    F+ + +  +A+   I
Sbjct: 389 MLCFADADILYITDIYAAGENPIEGITGQSLVDKITKHKHHDKANFLAELD--DAVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIMMGAGN 462


>gi|302522557|ref|ZP_07274899.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
 gi|302431452|gb|EFL03268.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
          Length = 470

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 90/431 (20%), Positives = 153/431 (35%), Gaps = 43/431 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A+   A+VVSSA    +          I VV  +    +L A   
Sbjct: 54  GATVHIGHD--AAHLAEDTSAVVVSSAIRADNPELVRARERGIPVVHRSDALAALMAGTR 111

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   LA+ GT GK++  S +       G   S+ IG                    
Sbjct: 112 P-------LAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIG-----GDLDAPGSNAHHGTG 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +  A +  S +                              N+  DH   + + +  + 
Sbjct: 160 EIFVAEADESDRSFHTY-----------------APEVAVVLNVELDHHANYASIEEIYE 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIH 286
           +    F   +      +I AD   ++E+  +       RVL+ G  +   + + KV    
Sbjct: 203 S-FETFVGKIVPGGTLVISADHEGARELTRRVRDRVDLRVLTYGSAEDADVRVHKVTPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+S+ GK   F   +PG    +NA+ A    +++G+    +   L     V  R 
Sbjct: 262 LTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  G  + G ++   YAH    +   L+ +R    GRI+VVF         +       A
Sbjct: 322 QLKGEAA-GVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRTQELGKEMGQA 380

Query: 407 LDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGF----IEKGNRIEAIRTAIE-MLNKQD 460
           L LAD ++V D  P  EDP E + +E+I          +   +  + +  A+  M    D
Sbjct: 381 LALADSSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGD 440

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 441 LVLTMGAGDVT 451


>gi|269219537|ref|ZP_06163391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210779|gb|EEZ77119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 472

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/460 (19%), Positives = 156/460 (33%), Gaps = 36/460 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
              P      +I+ +++D+R +  G +F AI G + DG      A++ GA A+V S   +
Sbjct: 19  GDTPPDVAREQISSLTADTRTVSGGEVFAAIKGARVDGAELAGAALSAGARAVVTSDPST 78

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFA------SRLYGKHPENILAVTGTSGKSSVASF 132
                A+      ++VVD+  K +   A      +R  G     ++AVTG+ GK++V   
Sbjct: 79  A---VASGADPARVIVVDDVEKAIGALARANLQRARAEGNPALKVVAVTGSVGKTTVKDL 135

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  + +  G      G  +           T      L              + + A   
Sbjct: 136 LASLVESRGPVIAPPGSFNNELGLPITVLRTDAGTATL-------------VLEMGADHV 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +        A +   + R H+           AK  L      +    ++ ADD  
Sbjct: 183 GNIDYLTSIAPPDASAVLIVARAHLGEFGGIDNVGRAKSELVTG-TREGGVVVLNADDP- 240

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEF 310
              V   A  A   VL+   +G      +   +    +   T+     + D    L GE 
Sbjct: 241 --RVAAMAGLAHGPVLTFSARGAGDVAARNIDVGADGRASFTLVTPEGEADVKLRLVGEH 298

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369
            V NAL AA L  ++GI +A +   L  +         V     G  +  D Y    +S+
Sbjct: 299 HVANALAAAALAHSLGIPTAQIASTLSAVGAASPHRMDVFEAG-GATVIDDSYNANPDSM 357

Query: 370 EMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPE 426
              L  +  +  G R + V G   +  +        I  A   A +A +       E+  
Sbjct: 358 RAGLAALERLGRGRRKVAVLGEMLELGEASLLEHEAIGKAAAQAGVACLVAV---GEEAR 414

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + +                 A+R     L   DV++V G
Sbjct: 415 PLASAAEAEGVDATWAAGPEGALRELDAALAAGDVVLVKG 454


>gi|67459429|ref|YP_247053.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia felis URRWXCal2]
 gi|75536156|sp|Q4UKN9|MURC_RICFE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|67004962|gb|AAY61888.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia felis URRWXCal2]
          Length = 478

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 148/436 (33%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA +    +    +    PI+     R+   + A  +  K 
Sbjct: 64  GH--AEQNITN-VSYVVISSAINSNNPEIKEALERKIPII-----RRA-EMLAELMRLKC 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G+ GK++  S V  + + +GL        + I+    +N+ T          
Sbjct: 115 S---VAVSGSHGKTTTTSLVACLFEAAGLC------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++  +    A  + 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYKDFETLIGA-FKS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V   ++   +  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKVAEYNK-AVVIDDYAHHPEEIKATLATAKNIADKQNGKVIAIFQPHRYSRMQHLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            +  + AD+  +TD     E+P           KI     H    F+ + +  +A+   I
Sbjct: 389 MLCFNDADMIYITDIYAAGEEPIEGITSQNLVNKITKNKHHDQANFLAELD--DAVEVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +  +  D++++ G G+
Sbjct: 447 DNASSGDMIIMMGAGN 462


>gi|71900694|ref|ZP_00682817.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71729515|gb|EAO31623.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 439

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 140/393 (35%), Gaps = 50/393 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121
           G + +VVSSA         IR + P L+   +++       ++ A  +  +H    +AV 
Sbjct: 74  GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +    GL      PT  I                L  A +      
Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGA 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + VEA        RL     +    TN+  DH++ +    +        F + LP  
Sbjct: 164 GQWLVVEADESDGSFLRL---NPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV-EGKD 299
             A++  DD    EV + A  A   V++ G      +  + V     +   T+ + EGK 
Sbjct: 221 GLALLCLDDP---EVAELAGKARRHVMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKV 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---- 355
                 LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    
Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            R+  DY H    LE +    R      R++V F          +       L   D  +
Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSSVDALV 397

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           +++  P  E P  I       +   I    R E
Sbjct: 398 LSEVYPAGEVP--IPGADAKALARAIRARGRSE 428


>gi|224368385|ref|YP_002602548.1| MurC [Desulfobacterium autotrophicum HRM2]
 gi|259509767|sp|C0Q8P4|MURC_DESAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|223691101|gb|ACN14384.1| MurC [Desulfobacterium autotrophicum HRM2]
          Length = 456

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 148/429 (34%), Gaps = 52/429 (12%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            +GH    Q   +  + +V S+A S  +      +   I  +        L   +     
Sbjct: 54  FNGHR-ADQV--KDVDVLVTSTAISKNNPEVIEAAERSIRTIPRAEMLAELMRIKYA--- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLA 171
               +AV+G  GK+S  + +  I  ++GL    +  G   +I + A   +          
Sbjct: 108 ----IAVSGAHGKTSTTAMIATILNQAGLDPTVVVGGLLKSIGTNAHHGKGDYIVAEADE 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              S+L                              + TN+  +H+D+++  +   +  +
Sbjct: 164 SDGSFLKYA-----------------------PAIAAVTNIDLEHLDFYKDIEDIKDNFV 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290
           + F   +P    A++  D+ + + ++ R      R  + G      +  + +     +  
Sbjct: 201 K-FINSVPFYGLAVLCLDNEHIQAILPRIT---ARYTTFGLSAQADLAARGIRFEGRRGY 256

Query: 291 VTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            T+ V GK+   D    L G+  + NAL A  + + + +D +++ E LE++  V  R E 
Sbjct: 257 FTV-VHGKEVLGDITLNLSGKHNISNALAAIAVALELKVDFSVIKEALEQIEGVKRRLEI 315

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            G       +  DY H    ++  L  +R      R++VVF                 A 
Sbjct: 316 KG-ERNSITVVDDYGHHPTEVKTTLAAVREGWPDKRVVVVFQPHRYSRTKALFDEFTRAF 374

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEI-------IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             +D+  V      SE P      +        HG    I   +    +    + L   D
Sbjct: 375 YQSDLLFVLPIYAASEQPIDGIDSLKLCNGIQEHGHKNVICVKDFESCLSILSDTLEPGD 434

Query: 461 VLVVAGKGH 469
           +++  G G 
Sbjct: 435 LVLTLGAGD 443


>gi|254283739|ref|ZP_04958707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
 gi|219679942|gb|EED36291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
          Length = 456

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 160/462 (34%), Gaps = 38/462 (8%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           D   +  +L    +   +  +++ V+ DSR + AG +FVA+ G + DGH +         
Sbjct: 6   DLNAIATRLGAEVLGATDALRVSGVAIDSRTVSAGDLFVALRGERVDGHDY--------- 56

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A   +           +    P L V  +   LSL A  +  ++   ++ +TG++GK+S
Sbjct: 57  VAAAHAGGAVAAVVEEPVAVEIPQLQVAASVDVLSLIAGMVREQYRGVLVGITGSAGKTS 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + +  +   +G +    G          +       P+ L +    +    V    + 
Sbjct: 117 AKTLLASVLAEAGPTLATSG----------NQNNEIGVPLTLFRLDPAIEFAVVE---MG 163

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A   G   H     +    +  N    H+  + +  A    K  +   L       +   
Sbjct: 164 AGRPGDIAHLCAVARPGITALLNAAPAHLANYDSVDAIARTKGEILAAL-GSGDLGVFNG 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D  Y+    + A  A  R   +        +      +      +      FD    LPG
Sbjct: 223 DQRYADVWREMAAPAEVRTFGMSKGVDVRAINIQYEGYKGTHFRVKTPEDGFDVALKLPG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              VYNAL A  +  A+G+  A +   LEK+    GR   +  +S G +I  D  + +  
Sbjct: 283 SPGVYNALAAIAIAGALGLSPAAIARGLEKVSPERGRGRALRASS-GAQIVDDSYNANPV 341

Query: 369 LEMILKNIRTITSGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
                 +   +T GR  ++ G     G   D+  R +  +      D  I   +  R   
Sbjct: 342 AVAAAIDTLAMTPGRRSLILGPMLELGPKTDEFHREMGVRAKEAGLDRLITVGEATRP-- 399

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                AE   G P      +   A+ +A+      D ++V G
Sbjct: 400 ----AAEGFGGSPQHFADNS---ALLSALPDFTSGDTVLVKG 434


>gi|291549817|emb|CBL26079.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus torques L2-14]
          Length = 458

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 138/415 (33%), Gaps = 50/415 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           +S       ++A I    P L+    RK   L  + L G+  +N    +AV+GT GK++ 
Sbjct: 66  ISDGIDCVVYTAAINKANPELMEAVARKIPMLTRAELLGQLMKNYKTPIAVSGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I   +      I     + +   + R+      ++ +A  Y +S    +     
Sbjct: 126 TSMISHIL-LAADLDPTISVGGILKAIGGNIRVGKSET-FITEACEYTNSFLHFY----- 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  DH+D+ +  +   ++    F  LLP +   II  D
Sbjct: 179 --------------PKISVILNIEEDHLDFFKDLEDIRHS-FHQFAALLPSDGTLIINGD 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFD-FLFPL 306
               +E+        C V++ G      +         K  V   +   GK  D     +
Sbjct: 224 IDNYQEIYDSL---DCNVITYGSSDMLDYSASNITYDEKGLVAFDLIKNGKVVDHIQLSV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V NAL +      + I    + + +        RFE+ GT   G  +  DYAH  
Sbjct: 281 TGDHNVSNALASIATAELLQIPMETIKKGILSFSGTDRRFEYKGT-FNGVTVVDDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--- 423
             +   LK  +     ++  VF                 AL   D  ++ D     E   
Sbjct: 340 TEIAATLKAAQHYPHNQVWCVFQPHTYTRTKAFFHEFAEALSHTDHLVLADIYAARETDT 399

Query: 424 ------DPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 D  +   ++    H +P F E     EA     E     D+L+  G G 
Sbjct: 400 LGVSSADLAEEARKLGTDAHYLPSFEEI----EAFLK--ENCKSGDLLITMGAGD 448


>gi|229586496|ref|YP_002844997.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia africae ESF-5]
 gi|259509780|sp|C3PMU4|MURC_RICAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|228021546|gb|ACP53254.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia africae ESF-5]
          Length = 485

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 142/436 (32%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL        + I+    +N+ T          
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLC------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++  +    A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V        I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKV-AEYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 ADI  +TD     E+P          +KI     H    F+ + +  +A+   I
Sbjct: 389 MFCFADADILYITDIYAAGENPIEGITGRNLVDKITKRKHHDKANFLAELD--DAVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIMMGAGN 462


>gi|15892254|ref|NP_359968.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia conorii str.
           Malish 7]
 gi|20532173|sp|Q92IT9|MURC_RICCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15619392|gb|AAL02869.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia conorii str.
           Malish 7]
          Length = 485

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 143/436 (32%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL        + I+    +N+ T          
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLC------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++  +    A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V        I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKV-AEYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            +    ADI  +TD     E+P          +KI     H    F+ + +  +A+   I
Sbjct: 389 MLCFADADILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELD--DAVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIMMGAGN 462


>gi|33593953|ref|NP_881597.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis Tohama
           I]
 gi|44888182|sp|Q7VUQ4|MURC_BORPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33564027|emb|CAE43293.1| UDP-N-acetylmuramate--alanine ligase [Bordetella pertussis Tohama
           I]
 gi|332383371|gb|AEE68218.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis CS]
          Length = 468

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 101/434 (23%), Positives = 148/434 (34%), Gaps = 55/434 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA AIV S+A +  +          I VV      L+       G    
Sbjct: 56  GHDRANVA---GAGAIVTSTAVAGDNPEVLAARAARIPVVPRAVM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +    GL      PT  I                L  A +
Sbjct: 108 --IAVAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGGR-------------LTSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA     D   L+ +  +    TN+  DH+D +    A   +    F 
Sbjct: 148 NARLGQGEYIVVEADES--DASFLNLL-PVMAIVTNIDADHMDTYGHDVARLKSAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    AI+ ADDA  +E+M         + + G         + V A   + + T+ 
Sbjct: 205 QRLPFYGSAILCADDANVREIMPFVSRP---ITTYGLSPDAQVCAQDVQADGTRMRFTVQ 261

Query: 295 VEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-- 347
              +D           LPG   V NAL A  +   +G+D A + E L     V  RF   
Sbjct: 262 RRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQW 321

Query: 348 ---FVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPI 401
               V     GG   +  DY H    +   L   R     R IV+ F             
Sbjct: 322 GDLPVPAAHGGGIFTLVDDYGHHPVEMAATLAAARGAWPQRRIVLAFQPHRYTRTRDCFE 381

Query: 402 MGKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                L  AD  ++T+     E P          RA  + G    +   +  E  +  ++
Sbjct: 382 DFVRVLGSADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAILD 441

Query: 455 MLNKQDVLVVAGKG 468
            +   DV+VV G G
Sbjct: 442 FVRDGDVVVVMGAG 455


>gi|226943454|ref|YP_002798527.1| UDP-N-acetylmuramate--L-alanine ligase [Azotobacter vinelandii DJ]
 gi|259509764|sp|C1DQA0|MURC_AZOVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226718381|gb|ACO77552.1| UDP-N-acetylmuramate--alanine ligase [Azotobacter vinelandii DJ]
          Length = 488

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 145/428 (33%), Gaps = 49/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A +  A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 69  GHR-AENAAS--ADVLVVSSAVNSSNPEVMTALERRIPVVPRA-EMLAELMRYRHG---- 120

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +           S  YL   +
Sbjct: 121 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAG----TNAQLGSSRYL---I 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D ++   +        F
Sbjct: 172 AEADESDASFL---------------HLQPMVAVVTNIDADHMDTYEGDFSRLKKTFVDF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++          ++ G  +   I    +     +   T 
Sbjct: 217 LHNLPFYGLAVLCVDDPVVREILPLVARP---TITYGLGEDADIRAVDIRQAGMRTYFTV 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +  E    +    +PG   V NAL    +    GID   +++ L     V  RF+  G  
Sbjct: 274 LRQERAPLEMSVNMPGVHNVLNALATIAIACDEGIDDTAIVQGLSGFQGVGRRFQVYGEL 333

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                G  +  DY H    +  +LK +R      R+++V+                  L 
Sbjct: 334 QIEGGGVMLVDDYGHHPREVAAVLKAVRGGWPDRRLVMVYQPHRFTRTRDLYEDFVQILS 393

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDV 461
            A++ ++ +  P  E+P        +   I            R   I   ++ +L   D+
Sbjct: 394 DANVLLLMEVYPAGEEPIPGADSRSLCRSIRQRGQLDPIYVERGADIAPLLKPLLRPGDI 453

Query: 462 LVVAGKGH 469
           L+  G G 
Sbjct: 454 LLCQGAGD 461


>gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA1]
 gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA1]
 gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA2]
 gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA2]
 gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA1]
 gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA1]
 gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA2]
 gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA1]
 gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA2]
 gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA1]
 gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA2]
 gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL086PA1]
 gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA4]
 gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA1]
 gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA3]
 gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA3]
 gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL067PA1]
 gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA1]
 gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA1]
 gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA2]
 gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA1]
 gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA1]
 gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA2]
 gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA2]
 gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA3]
 gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL078PA1]
 gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA2]
 gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA3]
 gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA1]
 gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA2]
 gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA1]
 gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA2]
 gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL097PA1]
 gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA3]
 gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA2]
 gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA3]
 gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL092PA1]
 gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA2]
 gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA1]
 gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL020PA1]
 gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA2]
 gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes 266]
          Length = 485

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 120/389 (30%), Gaps = 45/389 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L   +   P+    +   +V  D+R +  G +F+A+ G + DGH F   A   GA 
Sbjct: 5   DVATLAQWVEAAPVNDSAQVGPDVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGK 126
           A++V+     Q          P LVVD+ +  LS  A  +     +     +A+TG+SGK
Sbjct: 65  AVLVTRRTDAQ---------LPHLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + QI +  G +   +G  +           +  +  +L                
Sbjct: 116 TSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSE------------- 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G        +        N+G  H+    +++    AK  + E L   +  A++
Sbjct: 163 MGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSV-DGWAVL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D     +  R                         +     +  + + ++  +  + 
Sbjct: 222 NAADTLVAGMAPRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGES 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAI-----------GIDSALVLEHLEKLHVVPGR--FEFV 349
            +  P       A   A    A             ID   V    E L     R      
Sbjct: 282 TWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQ 341

Query: 350 GTNSRGGRIY--VDYAHTSNSLEMILKNI 376
                 G +     Y    +S+   L  +
Sbjct: 342 LRERADGLVLVEDCYNANPDSMAASLTAM 370


>gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
 gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
          Length = 792

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 139/376 (36%), Gaps = 26/376 (6%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +DSR +      +F A+   + DGH +I     +G    VV     + +   T+      
Sbjct: 3   TDSRSLCFPEETLFFALKTQRNDGHRYIQDLYNRGVRQFVVEQ---VPEAYETLYPQANF 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +T   L   A R   +    I+ +TG++GK+ V  ++ Q+   S            
Sbjct: 60  LRVPHTLAALQRLAERHRDEFSLPIVGITGSNGKTMVKEWLYQLLLPSQRI--------V 111

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            S  + ++++  P  ++L   L+  +  G+    +  S  G      D I+   G  T+L
Sbjct: 112 RSPRSYNSQIGVPLSVWL---LNEQTEVGIFEAGI--SQPGEMMALRDIIQPTIGVLTSL 166

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H +  ++ +     K+ L  +    E+      +D  S+ + +  +       S   
Sbjct: 167 GAAHQENFRSMEEKCMEKLELMHD---TEAMVYCSDNDIVSRCIRRMNYKGEKISWSTCD 223

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           Q    ++K V   H    +T   + ++  F  P   E  + + +  A + + +G+    +
Sbjct: 224 QQAAFYVKSVENSH----ITYIWKEEENCFDIPFIDEASIEDCITCAAVALRLGLTPGDL 279

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG 391
            + + KL  V  R E          I   Y    NSL++ L  +       +  ++    
Sbjct: 280 ADRMPKLEPVAMRLEVKEGQRGCILINDSYNSDINSLDIALDFMNRREELKKRTLILSDM 339

Query: 392 GDRDQGKRPIMGKIAL 407
                    +  +++ 
Sbjct: 340 FQSGLSPEKLYAQVSE 355


>gi|257063610|ref|YP_003143282.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791263|gb|ACV21933.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
          Length = 464

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/419 (20%), Positives = 141/419 (33%), Gaps = 40/419 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           G +A  V     +   S  I    P +V    R       + +  +       LA  GT 
Sbjct: 56  GHDAANVPENCDVVVASTAIPDTNPEIVAARERGIEVWQRAHMLAELGRGLKTLAAAGTH 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++ +S +       GL      PT  +       +    S              G  +
Sbjct: 116 GKTTTSSMLATAIDALGLD-----PTFVVGGMVDAYKTNAKSGT------------GEYY 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESP 243
           V     S G   +    +       TN+  DH+D++        +   + F   +P E  
Sbjct: 159 VVEADESDGSFLN----LSPYVALVTNVEPDHLDHYTGGIDEIRDTFAK-FMSSVPDEGA 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS-VEGKDFD 301
            +++ DD    E+++ A  +  RV + G  +G  I +             +S  +G +  
Sbjct: 214 CVVFGDDP---ELVRIARASAKRVYTYGLGEGNDIVVSGYSTKGISSTFDLSMPDGSNVT 270

Query: 302 FLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                 PG     NA    G+  A+G+D A   E +     V  RF+ VG  + G  +  
Sbjct: 271 CTLKKNPGLHNALNAAGILGVVFALGLDVAAAAEGIADYTGVRRRFDLVGEAA-GVTVVD 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH    ++  L     +   R+  +F                 A   AD+  + D  P
Sbjct: 330 DYAHHPTEIKATLSAAAGLDFKRVFALFQPHRYSRTASLTDEFGKAFADADVLRIMDVYP 389

Query: 421 RSEDP-----EKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             E P      K+ A+ +       +     ++ EA    +E L   D+L   G G  T
Sbjct: 390 AGEAPIEGVSGKLIADAVEAFGAPTDVAYLPDKDEAAARVLEELQPGDILFTMGAGDVT 448


>gi|313619820|gb|EFR91411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL S4-378]
          Length = 394

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 124/335 (37%), Gaps = 24/335 (7%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            ++Q       ++ P+++V+NT   L   A++   +    ++A+TG++GK++    +  I
Sbjct: 4   GAVQKDVPNPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAI 63

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +    +  G          +       P  +   L+      V  + +  +     +
Sbjct: 64  VETTYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAVLEMGMNHRHEIE 110

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K      TN+G  HI+Y  +++    AK+ +   L P            + + +
Sbjct: 111 VLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEENL 165

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +    +   R L+ G      I+  ++ A         + E  D +   P+ GE  V+N 
Sbjct: 166 LLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNT 224

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
           + A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK
Sbjct: 225 MAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLK 283

Query: 375 NIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +        +V     +       +  + A 
Sbjct: 284 TFMHMDSKGKPKYLVLADMLELGDLSTKLHQESAE 318


>gi|170720131|ref|YP_001747819.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida W619]
 gi|229620051|sp|B1J3L3|MURC_PSEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169758134|gb|ACA71450.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida W619]
          Length = 482

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 148/430 (34%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAH--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG   T +        +          +
Sbjct: 119 --VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  ++            F
Sbjct: 170 AEADESDASFL---------------HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              LP    A++  DD   +E++ +        ++ G+ +   I    V     +   T+
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRP---TVTYGFCEEADIRAINVSQKGMQTHFTV 271

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
               ++  +    +PG   V NAL    +    GI    +++ L     V  RF+    +
Sbjct: 272 LRRDREPLEVSVNMPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K +R    S R+++V+                  L 
Sbjct: 332 PVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRTRDLYDDFVQVLG 391

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
            A++ ++ +  P  E+  P     ++ H I       P +IE+G   E       +L   
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERG--AELAPLVKPLLRAG 449

Query: 460 DVLVVAGKGH 469
           D+L+  G G 
Sbjct: 450 DILLCQGAGD 459


>gi|94498831|ref|ZP_01305375.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
 gi|94421719|gb|EAT06776.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
          Length = 475

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 141/419 (33%), Gaps = 48/419 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A    +    +   T + V+        L          ++ +AV GT GK+
Sbjct: 68  AAVVVTSTAIKRGNPEVELALETRVPVIRRAEMLAELMRL-------KSTVAVAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +    G+    I     I+S+  + RL     +                  V
Sbjct: 121 TTTSMIAALLDAGGVDPTVING-GIINSYGSNARLGNSDWM-----------------VV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RLDG        TN+  +H+D++ +     +A +  F   +P    A++ 
Sbjct: 163 EADESDGSFLRLDGT---IAVVTNIDPEHLDHYGSFDRVKDAFVE-FVGNVPFYGAALLC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------D 301
            D    + ++ R  +          Q   I  + V  +       + +  +D       D
Sbjct: 219 LDHPEVQAILPRVQDRRIVTYGFSAQAD-IRGENVRPVPGGNLFDVLIRDRDGHVEKISD 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRI 358
            L P+PG   V N+L A G+ + +GI   ++    EK   V  RF  VG          +
Sbjct: 278 ILLPMPGRHNVSNSLAAIGVALQLGITHDVICTGFEKFGGVKRRFTKVGEVQLEGGVATV 337

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    +  +L   R    GR++ +                + A + ADI      
Sbjct: 338 IDDYGHHPVEIRAVLAAAREGALGRVVAIVQPHRFTRLRDLMDEFQQAFNDADIVYAAPV 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNR--------IEAIRTAIEMLNKQDVLVVAGKGH 469
               E P +        + G   +G+R         +        L   D++V  G G 
Sbjct: 398 YAAGEQPIEGVDS-AALVAGLKRRGHRHAATVADAADLAAQIAADLQPDDMIVCLGAGD 455


>gi|260437509|ref|ZP_05791325.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
 gi|292810142|gb|EFF69347.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
          Length = 458

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/424 (19%), Positives = 157/424 (37%), Gaps = 44/424 (10%)

Query: 64  IAQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I+QG +  +   A ++ D      ++A I ++   L     +    +  + L G+   N 
Sbjct: 51  ISQGIKVFIGQKADNITDDIDLVVYTAAIHNDNEELAAARAKNIPVITRAELLGEIMTNY 110

Query: 118 ---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + V+GT GK++  S + +I   +G     +     + S   + R+      ++ +A 
Sbjct: 111 KTAVGVSGTHGKTTTTSMLTEIL-VNGSLDPTVSVGGILPSIHGNLRIGHSD-NFVTEAC 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y +S      ++E                      N+  DH+D+ +      N+  R +
Sbjct: 169 EYTNSFLSFFPTIE-------------------IILNIEEDHLDFFKDINDIRNSFGR-Y 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQV 291
             LLP+    +I  D    +E+ K   NA C V++VG      +     +          
Sbjct: 209 VRLLPENGLLVINNDIDNVEEIYK---NAACPVITVGKTPDADYTADNISFDEFGCPSYD 265

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I            +PG   VYN+L A  + I +GID + +++ L+  H    RF+  GT
Sbjct: 266 LIRQGNTIGRIALSVPGIHNVYNSLAAIAVAIHLGIDISTIIDSLKGFHGTDRRFQKKGT 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G  I  DYAH    +   + +       +++++F                  L  AD
Sbjct: 326 -VNGFTIIDDYAHHPAEINATINSAMNYPHKKLVIIFQPHTYTRTKAFLKDFADVLKRAD 384

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + I+ D     E        + I   I       I + +  +  +  ++   K D+++  
Sbjct: 385 LVILPDIYAARETDTLGISSKDIADLINAAGTECIYEPDFDKICQIILDRCRKGDLVITM 444

Query: 466 GKGH 469
           G G+
Sbjct: 445 GAGN 448


>gi|251780203|ref|ZP_04823123.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084518|gb|EES50408.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 460

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 146/444 (32%), Gaps = 55/444 (12%)

Query: 51  GNKEDGHLFIPQAIAQ-----GAEAIVVSSAYSLQD-----FSATIRSNTPILVVD---- 96
           G K  G  F    I +     GA+  +  S  +++D     ++A I  N P L+      
Sbjct: 34  GYKVSGSDFKESEILKKLRLSGADIYIGHSEKNIKDVDLVVYTAAIPENNPELIYAKENN 93

Query: 97  -NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTI 153
            +         + + G   +  +A++G  GK++  S +  I  ++ L    +  G    I
Sbjct: 94  IDLMNRAEFLGNIMKGH--KYNVAISGAHGKTTCTSMLSNITLKANLDPTILVGGELDII 151

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +                S+LS                            G   N+ 
Sbjct: 152 GGNFRIGSSDYFITEACEYKRSFLSFF-----------------------PYVGVILNID 188

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH+DY++          + F +L+P +   I Y  D+  KE++ +A    C  LS G++
Sbjct: 189 ADHLDYYKDIDEITETFGQ-FADLIPNDGYLIGYIGDSRVKEILYKAK---CNTLSYGFE 244

Query: 274 GKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +  + +                 K FD     PGE  + NAL +  + +   ++   
Sbjct: 245 NADVTARNITFNEKGCASFDVYKHNNKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDD 304

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           ++  L +      RFE+ G    G  +  DYAH    ++  L   + I   +   VF   
Sbjct: 305 IICGLSECKGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVFQPH 363

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNR 445
                         A   AD  ++ D     E    + +    G+             + 
Sbjct: 364 TYTRTKTLFDEFTDAFFDADEVVLMDIYAAREKDTGLVSSNDLGVALRAKGVKCTNVHSH 423

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGH 469
            EA+          D+L+  G G 
Sbjct: 424 DEALEYLKNSAKPNDLLLTVGAGD 447


>gi|60680368|ref|YP_210512.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis NCTC 9343]
 gi|60491802|emb|CAH06560.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis NCTC 9343]
 gi|301161901|emb|CBW21445.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis 638R]
          Length = 840

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 153/426 (35%), Gaps = 33/426 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQ 62
           +++      ++ ++    +  +   I+ + +DSR +      +F AI   + +G  +IP 
Sbjct: 8   NIMSYTIESIVEKIGARRLGNKPAAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPD 67

Query: 63  AIAQGAEAIVVSSAY------SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
              +G    VV+S          +    T+      L+V NT K L   A +  G     
Sbjct: 68  LYERGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIP 127

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK+ V  ++ Q+            P   I    +        P+ + + ++ 
Sbjct: 128 VVGITGSNGKTIVKEWLHQLLS----------PDRVIVRSPRSYNSQIGVPLSVWQ-MNE 176

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S  G+    +  S  G  +   + IK   G  TN+G  H +   + Q     K+ LF++
Sbjct: 177 ESELGIFEAGI--SEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKD 234

Query: 237 LLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   I   D+   S  V K    A     S+    + +++ +V    +   ++   
Sbjct: 235 C----DVVIYNGDNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRY 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D  F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +  
Sbjct: 291 LEMDNTFCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNC 350

Query: 356 GRIYVDYAHTSNSLEMILKN--IRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALD 408
             I   Y     SL++ L     R+ + G         +   G       R +   +   
Sbjct: 351 ILINDSYNSDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSR 410

Query: 409 LADIAI 414
             +  I
Sbjct: 411 GIEKII 416


>gi|213965279|ref|ZP_03393476.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
 gi|213952131|gb|EEB63516.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
          Length = 497

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 92/453 (20%), Positives = 153/453 (33%), Gaps = 79/453 (17%)

Query: 70  AIVVSSAY---SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A+V+S A    +  + +     + P+L   +    L               L + GT GK
Sbjct: 84  AVVISFAAIPKTNPELAGAHELDIPVLKRSDVLALLM---------QDSKALLIAGTHGK 134

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G   SF +G   + +                           V   
Sbjct: 135 TSTTSMTVAALQAAGLDPSFAVGGLMSKAGVNAHQGSG-----------------DVFVA 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + S   L  +     +      TN+  DH+D+    + Y  A    F E +      +
Sbjct: 178 EADESDASLLTY-----QPEVAVITNIEPDHLDFFGDDETY-YAVFDAFAERIKDGGHLV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---------LKKVCAIHNKQQVTISVE 296
           + A+D ++  + +RA   G  VL+ G +              L     +    +V  +V 
Sbjct: 232 VCAEDPHAAALGERAVERGINVLAYGGEDALAKHPTLPVGAVLHGWTPVGGGARVEATVG 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-- 354
                F    PG     NAL A      +G D   +   L +   V  RF++ G+     
Sbjct: 292 STSVRFELHQPGRHMALNALAAMVGGDCVGADLGRMARGLGEFTGVRRRFDYHGSIGEGP 351

Query: 355 --GGRIYVDYAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIALD 408
             G RIY DYAH    +  +L   R + +    G +I VF                 AL 
Sbjct: 352 FVGARIYDDYAHHPTEVSAVLGAARELVTEAGRGNVIAVFQPHLYSRTRNFADEFAAALS 411

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           LAD A++ D     E+P        I  ++   +   P F     R+       E+    
Sbjct: 412 LADKAVLLDVFGAREEPLPGVDGALIANKMTIPVTYEPHFTSVPARVR------EIAEPH 465

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           DV++  G G  T  ++ +         +I+RE+
Sbjct: 466 DVILTIGAGSVT--MLAD---------EIVREL 487


>gi|262380536|ref|ZP_06073690.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
 gi|262297982|gb|EEY85897.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
          Length = 482

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/429 (20%), Positives = 146/429 (34%), Gaps = 51/429 (11%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI  A    +GA  +VVS+A   ++          I VV    + L       +G     
Sbjct: 71  FIGHAADNIKGASVLVVSTAIDPENPEVKAAIEQRIPVVRRA-EMLGELMRYRHG----- 124

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  +    G+      PT  I                +  AL  
Sbjct: 125 -IAVAGTHGKTTTTSLLTCMLAEEGMD-----PTYVIGGLLNRT--------GVNAALGA 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                      +AS   L+         +A   TN+  DH+D +             F  
Sbjct: 171 SRYIVAEADESDASFLHLE--------PMAAIVTNIDADHMDTYGGSFDVLKDTFIQFLH 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
            LP    A++  DDA  +E+M R       +L+ G+     I    V     +   T+  
Sbjct: 223 KLPFYGLAVVCGDDANIREIMPRIARP---LLTYGFNPDNDIRAVDVEQDGMRSHFTVLR 279

Query: 296 EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
           + ++        PG   V NAL A G+    G+  A +   LE    V  RF+  G    
Sbjct: 280 KDREPLRLTINQPGLHNVLNALAAIGVATDEGVSDAAIGRALEGFSGVGRRFQVQGEFGL 339

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                ++  DY H    +E  +K  R +    R++++F                  L   
Sbjct: 340 EQGTVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMMFQPHRFSRTRDCFDDFVDVLSQV 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAI-EMLNKQD 460
           D  ++ +  P  E P  I       +   I     +E I         +  I ++L   D
Sbjct: 400 DQLLLLEVYPAGEKP--IVGADSRSLARSIRLRGEVEPILIDPVEGNLQNVIQKVLQPND 457

Query: 461 VLVVAGKGH 469
           +L+  G G+
Sbjct: 458 LLLTQGAGN 466


>gi|56551728|ref|YP_162567.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|59803054|sp|Q9RNM7|MURC_ZYMMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56543302|gb|AAV89456.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 476

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 125/367 (34%), Gaps = 39/367 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +          I VV        L          ++ +AV GT GK+
Sbjct: 68  AAVVVVSSAIHRGNPEVEAALENRIPVVRRAEMLAELMRL-------KSTVAVAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G+    I     I+S+  + RL     +                  V
Sbjct: 121 TTTSMVAALLDAGGIDPTVING-GIINSYGSNARLGDSDWM-----------------VV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RLDG        TN+  +H+D++ + +   +A +  F   +P    A + 
Sbjct: 163 EADESDGSFLRLDGT---LAIVTNIDPEHLDHYGSFEKVQDAFVE-FVSNVPFYGAAFLC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            D    + ++ R  +          Q   I    +  I    + T  + G+D D      
Sbjct: 219 IDHPVVQSILPRIRDRRLITYGFSAQAD-IRAVDITPISGGNRFTAVIRGRDGDIRRIEN 277

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRI 358
              P+PG   + NAL A G+ +   I  A + +   +   V  RF  VG    G     +
Sbjct: 278 IFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRVGEIKIGDGSVLV 337

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    ++ +L   R     R+I V                + A + AD+  V   
Sbjct: 338 IDDYGHHPVEIKAVLSAARESAQQRVIAVVQPHRFSRLHDLMTEFQSAFNDADMVFVAPV 397

Query: 419 NPRSEDP 425
               E P
Sbjct: 398 YAAGEQP 404


>gi|225571175|ref|ZP_03780173.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
 gi|225160006|gb|EEG72625.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
          Length = 459

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 142/420 (33%), Gaps = 52/420 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTS 124
           A  I+      +  ++A I  +         +    L  + L G+   N    +AV+GT 
Sbjct: 63  ASNII--DGIDVAVYTAAIHEDNEEFKAAAQKGIPMLSRAELLGQLMTNYDVPIAVSGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I   +G     I     + +   + ++ T S +++ +A  Y +S     
Sbjct: 121 GKTTTTSMLSHIL-LAGDLDPTISVGGILKAIGGNIKVGT-SGLFVTEACEYTNSFLHFF 178

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+D+ +      N+  R F  LLP +   
Sbjct: 179 -------------------PKISVILNIDEDHLDFFKDLDDIRNS-FRRFAALLPADGTL 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFL 303
           +I  +    +E+        CRV++ G +    +     + + K   +   V+  +F   
Sbjct: 219 VINGEIENLEEITA---GLSCRVVTYGTEHSMNYSASNISHNEKGDASFDLVKNGEFMER 275

Query: 304 FPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             L   G+  V NAL A  +   + +  A +   L++      RFE  G    G  +  D
Sbjct: 276 VQLSVNGDHNVSNALAAVAVADILSVPLADICRGLKEFAGTNRRFEHKGEK-NGFTVIDD 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++  L          +  VF                 AL LAD  I+ D    
Sbjct: 335 YAHHPTEIKASLTAAAHYPHKELWCVFQPHTYTRTKALFHEFVDALALADHVILADIYAA 394

Query: 422 SEDP------EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E          I   +            F E  +        ++M +K D+L+  G G 
Sbjct: 395 RETDTLGISSRDIADALKEKECDAYYFSTFKEIED------FCLDMCHKGDLLITMGAGD 448


>gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16]
 gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16]
          Length = 848

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 153/426 (35%), Gaps = 33/426 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQ 62
           +++      ++ ++    +  +   I+ + +DSR +      +F AI   + +G  +IP 
Sbjct: 16  NIMSYTIESIVEKIGARRLGNKPAAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPD 75

Query: 63  AIAQGAEAIVVSSAY------SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
              +G    VV+S          +    T+      L+V NT K L   A +  G     
Sbjct: 76  LYERGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIP 135

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK+ V  ++ Q+            P   I    +        P+ + + ++ 
Sbjct: 136 VVGITGSNGKTIVKEWLHQLLS----------PDRVIVRSPRSYNSQIGVPLSVWQ-MNE 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S  G+    +  S  G  +   + IK   G  TN+G  H +   + Q     K+ LF++
Sbjct: 185 ESELGIFEAGI--SEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKD 242

Query: 237 LLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   I   D+   S  V K    A     S+    + +++ +V    +   ++   
Sbjct: 243 C----DVVIYNGDNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRY 298

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D  F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +  
Sbjct: 299 LEMDNTFCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNC 358

Query: 356 GRIYVDYAHTSNSLEMILKN--IRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALD 408
             I   Y     SL++ L     R+ + G         +   G       R +   +   
Sbjct: 359 ILINDSYNSDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSR 418

Query: 409 LADIAI 414
             +  I
Sbjct: 419 GIEKII 424


>gi|158426180|ref|YP_001527472.1| UDP-N-acetylmuramate--L-alanine ligase [Azorhizobium caulinodans
           ORS 571]
 gi|172047924|sp|A8HZ95|MURC_AZOC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158333069|dbj|BAF90554.1| UDP-N-acetylmuramate-alanine ligase [Azorhizobium caulinodans ORS
           571]
          Length = 467

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 140/418 (33%), Gaps = 49/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +VVSSA    +          + VV        L   +         +A+ GT GK
Sbjct: 66  GAEVVVVSSAIKRDNPELLAARAKRLPVVRRAEMLAELMRLKSC-------VAIAGTHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +  + G     I     I+++  + RL     + +    S           
Sbjct: 119 TTTTSLVATLLDKGGFDPTVING-GIINAYGTNARLGAGDWMVVEADESD---------- 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+  +H+D+ +T      A  R F E +P    A++
Sbjct: 168 ----------GTFLKLPAEVAIITNIDPEHLDHFKTFDKVQEA-FRTFVENVPFYGFAVM 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD---- 301
             D    + ++ R  +   R+++ G      + L  V       +  +    +       
Sbjct: 217 CIDHPVVQALVGRIEDR--RIITYGENPQADVRLVDVDLRGGITRFGVVFRDRAGTAEHR 274

Query: 302 ---FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P+PG+    NA  A  +   + +    ++E +     V  RF   G   +G  I
Sbjct: 275 IDGLKLPMPGKHNALNATAAIAVARELRVPDDRIIEAIGGFGGVKRRFTRTGEW-KGATI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           + DY H    +  +L+  R  T G++I V                    + AD  IV   
Sbjct: 334 FDDYGHHPVEISAVLRAARAATEGQVIAVVQPHRYTRLASLFDEFCTCFNDADHVIVAPV 393

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNR-IEAIR-------TAIEMLNKQDVLVVAGKG 468
               E P    A+  H + G   +G+R + A++           +    D ++  G G
Sbjct: 394 YAAGESPVP-GADSEHLVQGLRARGHRSVTALKGPEELAGLVAGLAKPGDFVICLGAG 450


>gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA1]
          Length = 485

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 120/389 (30%), Gaps = 45/389 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L   +   P+    +   +V  D+R +  G +F+A+ G + DGH F   A   GA 
Sbjct: 5   DVATLAQWVEAAPVNDSAQVGPDVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGK 126
           A++V+     Q          P LVVD+ +  LS  A  +     +     +A+TG+SGK
Sbjct: 65  AVLVTRRTDAQ---------LPHLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + QI +  G +   +G  +           +  +  +L                
Sbjct: 116 TSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSE------------- 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G        +        N+G  H+    +++    AK  + E L   +  A++
Sbjct: 163 MGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSV-DGWAVL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D     +  R                         +     +  + + ++  +  + 
Sbjct: 222 NAADTLVAGMAPRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGES 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAI-----------GIDSALVLEHLEKLHVVPGR--FEFV 349
            +  P       A   A    A             ID   V    E L     R      
Sbjct: 282 TWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQ 341

Query: 350 GTNSRGGRIY--VDYAHTSNSLEMILKNI 376
                 G +     Y    +S+   L  +
Sbjct: 342 LRERADGLVLVEDCYNANPDSMAASLTAM 370


>gi|317154475|ref|YP_004122523.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944726|gb|ADU63777.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 480

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/427 (20%), Positives = 147/427 (34%), Gaps = 60/427 (14%)

Query: 67  GAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTR--------KFLSLFASRLYGKH 113
           GA   +   A +L +         I    P LV    R        + L+       G  
Sbjct: 68  GATVFIGHGAANLGEADVLIKSTAIPDKNPELVAARGRGIPIIPRAEMLAELMRLRTG-- 125

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLA 171
               +A+ GT GK++  S +  I   +GL    I  G  +T                   
Sbjct: 126 ----VAIAGTHGKTTTTSLLATIFTEAGLDPTVIIGGKLNTYG----------------- 164

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              +     G  ++  EA         L     I    TN+ +DH+D++  Q A  +A  
Sbjct: 165 ---ANARLGGGDYLIAEADESDGSFLLLS---PIISVVTNVDKDHMDFYADQDAIDDAFT 218

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R F   +P     ++  DD   + ++          L+ G   K     ++   H +   
Sbjct: 219 R-FMNSIPFYGMNVVCGDDEGVQRLLPTIKRPC---LTYGLGPKNRLRGEIITSHLRSLF 274

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + ++G+ + +     PG   V NAL   G+ +  G+D   ++  L     V  RFE  G
Sbjct: 275 RVFLDGQPWGEVTVAQPGIHNVQNALACIGVALEAGLDKEDIVNGLANFGGVGRRFERKG 334

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
              +G  +  DY H    +   L+  R     R +VV      R    + + G+   A  
Sbjct: 335 -ERKGVLVVDDYGHHPAEIIANLRTARACYPDRRLVV-AFQPHRFTRTQALFGEFCKAFT 392

Query: 409 LADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDV 461
            AD+ ++T+  P SE P    +   +  GI    +       +         + L   D+
Sbjct: 393 DADLLLLTEIYPASESPIPGVSGLSLAQGIKQVSDTKVQFFPDFESLEARLADTLRPGDL 452

Query: 462 LVVAGKG 468
            +  G G
Sbjct: 453 FMTQGAG 459


>gi|126741300|ref|ZP_01756978.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
 gi|126717618|gb|EBA14342.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
          Length = 471

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 141/414 (34%), Gaps = 47/414 (11%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +V+SSA      +         P++   +    L            ++ +A+ GT G
Sbjct: 71  AAVVVISSAIKPGNPELDEARLRGLPVVRRADMLAELMRL---------KSNIAIAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + + ++    G     I     I ++  + R+     +                 
Sbjct: 122 KTTTTTMMAELMVAGGFDPTIING-GIIHAYGSNARMGQGEWM----------------- 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++              F   +P    A+
Sbjct: 164 VVEADESDGSFNRLPAT---IAVVTNIDPEHMEHWGDFDTLRQG-FHDFVSNIPFYGIAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
              D    + ++ R  +   RV++ G+     +    +          + ++ +D     
Sbjct: 220 CCTDHPEVQTLVGRISDR--RVVTYGFNAQADVRASNLTYKGGVAHFDVHLQAEDRVIEG 277

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG+  V NAL A  +   +G++S+ + E L     V  RF  VG    G  I  D
Sbjct: 278 CTLPMPGDHNVSNALSAVAVARHLGMNSSEIREALAAFGGVNRRFTKVG-EVDGVTIIDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H    +  +LK  R    GR+I V                    + AD+  + +    
Sbjct: 337 YGHHPVEIAAVLKAARQACEGRVIAVHQPHRYSRLSSLFDDFCACFNEADVVAIAEVFAA 396

Query: 422 SEDP--EKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468
            EDP     R +++ G+     +  R      +  R   E     D++V  G G
Sbjct: 397 GEDPIEGASRDDLVAGLVRHGHRHARALMDEGDLERLVREQARPGDMVVCLGAG 450


>gi|53712185|ref|YP_098177.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis YCH46]
 gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46]
          Length = 848

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 153/426 (35%), Gaps = 33/426 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQ 62
           +++      ++ ++    +  +   I+ + +DSR +      +F AI   + +G  +IP 
Sbjct: 16  NIMSYTIESIVEKIGARRLGNKPAAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPD 75

Query: 63  AIAQGAEAIVVSSAY------SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
              +G    VV+S          +    T+      L+V NT K L   A +  G     
Sbjct: 76  LYERGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIP 135

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK+ V  ++ Q+            P   I    +        P+ + + ++ 
Sbjct: 136 VVGITGSNGKTIVKEWLHQLLS----------PDRVIVRSPRSYNSQIGVPLSVWQ-MNE 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S  G+    +  S  G  +   + IK   G  TN+G  H +   + Q     K+ LF++
Sbjct: 185 ESELGIFEAGI--SEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKD 242

Query: 237 LLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   I   D+   S  V K    A     S+    + +++ +V    +   ++   
Sbjct: 243 C----DVVIYNGDNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRY 298

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D  F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +  
Sbjct: 299 LEMDNTFCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNC 358

Query: 356 GRIYVDYAHTSNSLEMILKN--IRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALD 408
             I   Y     SL++ L     R+ + G         +   G       R +   +   
Sbjct: 359 ILINDSYNSDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSR 418

Query: 409 LADIAI 414
             +  I
Sbjct: 419 GIEKII 424


>gi|110802290|ref|YP_699487.1| cyanophycin synthetase [Clostridium perfringens SM101]
 gi|110682791|gb|ABG86161.1| cyanophycin synthase (L-aspartate-adding) [Clostridium perfringens
           SM101]
          Length = 874

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 167/406 (41%), Gaps = 31/406 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G   F +G T+T      
Sbjct: 464 RKILDNMFKNNYSNIP--VISVTGTNGKTTTVRLISYVLNLIG---FNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI- 217
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 218 -DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVKS-LVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVAAGLCIA 324
           +     L+     +  + + +   GK++         F      +  + NA+ A    + 
Sbjct: 637 LQENLKLENPIVFYRDETIYVKNRGKEYKIASAEDMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +D  ++ + L+K        R  F   +  G  + +DY H  +  ++++ +++ +   
Sbjct: 697 IEVDYCIISKGLKKFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGFK 756

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI----- 436
            I  + G  GDRD      +GKI+ D  D  ++ +D + R +D  ++ + I  G+     
Sbjct: 757 NITGIIGVPGDRDLNTMKEVGKISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNR 816

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                    +  EA+R  +++  K + +++  + +E+++ + N  K
Sbjct: 817 KDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFK 862


>gi|291302802|ref|YP_003514080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572022|gb|ADD44987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 450

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 141/438 (32%), Gaps = 36/438 (8%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            D R  + G +FVA  G++ DGH F  QA   GA A++ S   SL             +V
Sbjct: 34  LDGRQAEPGGLFVAFAGDRVDGHDFAEQAGEAGAVAVLGSRPTSLST-----------VV 82

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V + +  +   A+ + G+  +   +  +TG+ GK+S    +  +   +  +   +   + 
Sbjct: 83  VKDVQAAVQALAAYVVGRLRDGLTVAGLTGSQGKTSTKDLLATVVSSTAPTIAAVDSFNN 142

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                        +  +L              + + A   G        +        N+
Sbjct: 143 EIGVPVTMLRADAASRFL-------------VLEMGARRVGDIADLTGLVAPDVAVVLNV 189

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H+ Y  ++QA   AK  L   L P    A++ ADD      M+   N          
Sbjct: 190 GQSHLSYFGSRQAIAKAKGELVRGLAP-GGTAVLNADDPVVVA-MRSLTNGPVLTFGYAE 247

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 +       ++   T+           PL G  Q +NA  A    +A G+   + 
Sbjct: 248 HADVRVVDLTLDRLSRPSFTLRTADGSAFVELPLVGAHQAHNASAAVAAGLAAGVPLDVA 307

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              L    +   R E    +S    +   +    +S    L  +  I  GR I V G   
Sbjct: 308 ASALATASLSKWRMELRELDSGATLLNDSFNSNPDSTRAALDALAGIEGGRRIAVLGEML 367

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRT 451
           +                A  A              I + +  G     +   +   AI  
Sbjct: 368 ELGDDHESEHRAAGEYAAARA------DVVVAVGGIASLVADGAGDSAVALPDNDAAIDW 421

Query: 452 AIEMLNKQDVLVV-AGKG 468
               +   DV++V A +G
Sbjct: 422 LRGHITAGDVVLVKASRG 439


>gi|310829359|ref|YP_003961716.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
 gi|308741093|gb|ADO38753.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
          Length = 471

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 145/423 (34%), Gaps = 47/423 (11%)

Query: 56  GHLF--IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH +  IP+        +V S+A    +       +  + +V+ +  +L L +       
Sbjct: 64  GHDYNNIPEDTDM----VVYSAAIHEDNPDMVRAKDLDLPIVERS-DYLGLLSLAF---- 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  + V GT GK++ +S +  +   +                   N     S  ++ ++
Sbjct: 115 -DKTIGVAGTHGKTTTSSMIAALLHYADFDPSV--SIGGKLPEIGGNACLGDSDYFVIES 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y+ S   T                       G  TN+  DH+DY              
Sbjct: 172 CEYVDSFLKTSHY-------------------IGIITNIEEDHLDYFTEGLPQIKESFHK 212

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
           F  +LP +   I Y D   S++V+    N  C V + G++ K       +          
Sbjct: 213 FGAILPPDGLMIAYGD---SQDVLDTVENLRCPVTTYGFEKKNDWTAHNIQYDDMGNPSF 269

Query: 293 ISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +    +F   F   +PGE  V NAL        +GID A V + L+  H    RFEF G
Sbjct: 270 DAYHHNEFYGHFNMKIPGEHNVLNALSCIACSEFLGIDEATVQKTLDNFHGAKRRFEFRG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G  +Y DYAH    L++++          + V+F                 A   A
Sbjct: 330 -EVNGINVYEDYAHHPTELKVVIDACLNHAHNNLWVIFQPHTYSRTFYLFDEFVDAFAKA 388

Query: 411 DIAIVTDDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEA-----IRTAIEMLNKQDVLV 463
           D  I+ D     E  D +    ++   I         + +     ++   + L   D+++
Sbjct: 389 DFIILNDIYSDREGNDWDIYSEDLAKRIKEKYHIPTIVMSEFNTIVKYLSDNLESDDLVL 448

Query: 464 VAG 466
           VAG
Sbjct: 449 VAG 451


>gi|119387199|ref|YP_918254.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
 gi|166224712|sp|A1BAL4|MURC_PARDP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119377794|gb|ABL72558.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
          Length = 475

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 136/423 (32%), Gaps = 54/423 (12%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             G   I  +      +     R   P++        L            ++ +A+ GT 
Sbjct: 70  EAGVVVISTAIKKGNPELEEARRRGLPVVRRAEMLAELMRL---------KSNVAIAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +    G     I     I ++  + R      +                
Sbjct: 121 GKTTTTTMVATLLDAGGFDPTVING-GVIHAYGSNARAGAGEWM---------------- 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VEA       +RL          TN+  +H+++  +  A      + F   +P    A
Sbjct: 164 -VVEADESDGSFNRLPAT---IAIVTNIDPEHMEHWGSFDALRKG-FQDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---- 300
           +   D    + ++ R  +          Q   +    +   +      I+++G+      
Sbjct: 219 VCCTDHPEVQSLVGRLTDRRVATFGFNAQAD-VRAINLRYENGVAHFDIALQGEAELNEG 277

Query: 301 ------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     P+PG+  V NAL A  +   +G+  A + E L +   V  RF  VG    
Sbjct: 278 EVPVIEGCTLPMPGDHNVSNALAAVAVARHLGMKRAQIREALARFGGVSRRFTRVG-EVD 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  I  DY H    +  +LK  R  T GR+I V                    + AD+  
Sbjct: 337 GVTIIDDYGHHPVEIAAVLKAARQATKGRVIAVHQPHRYSRLSSLFDDFCTCFNEADVVA 396

Query: 415 VTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVA 465
           + +     E+  P   R +++ G+     +  R  A+       R   E     D++V  
Sbjct: 397 IAEVYSAGEEPIPGASRDDLVAGLIAHGHRHAR--AVMDEGDLERLVREQARPGDMVVCL 454

Query: 466 GKG 468
           G G
Sbjct: 455 GAG 457


>gi|300780833|ref|ZP_07090687.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
 gi|300532540|gb|EFK53601.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
          Length = 465

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 98/430 (22%), Positives = 155/430 (36%), Gaps = 48/430 (11%)

Query: 65  AQGAEAIVVSSAYSLQDFS----------ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           AQGA   V  +A +L+             A I  + P LV         +  S L G+  
Sbjct: 48  AQGAHIAVGHAAENLELAGELPTVVVTSFAAIPQDNPELVGAAEHGIPVIRRSDLLGELM 107

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           E    +   GT GK+S  S      Q +G   SF IG     +     +           
Sbjct: 108 EGYTQMLFAGTHGKTSTTSMAVVALQAAGEDPSFAIGGQLNRAGTNAHHGSG-------- 159

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                     V     + S   L ++R           TN+  DH+DY    + Y+    
Sbjct: 160 ---------AVFVAEADESDGSLLRYR-----PDIAVITNIEPDHLDYFGDAETYYKV-F 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-----KFIHLKKVCAIH 286
             F + +      I+  DD  + E   RA   G  V+  G           H+      +
Sbjct: 205 DDFADRITDTGTLIVCLDDESAAECGVRALERGVTVVGYGTMTHPSIPNAAHVVDWRTEN 264

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   V +++ G +  +   +PG+  V N++ A    +  G D   + E L     V  RF
Sbjct: 265 DLSVVKVNLNGTEMTYHLSIPGKHMVLNSVAALVAGVTAGADPFALAEGLSGFTGVRRRF 324

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E  G  S G R+Y DYAH    ++ +LK  +  T  R++V F         +       A
Sbjct: 325 ELRGELSDGTRVYDDYAHHPTEVDAVLKAAKG-TGARVVVCFQPHLYSRTQEFAGEFADA 383

Query: 407 LDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           L LAD A+V D     E P +     I  + +  I   + + N   A     +++   D+
Sbjct: 384 LSLADAAVVLDIFGARETPVEGLDSRIITDHMS-ITDVVYEPNFSAAPAAVAKLVRPGDL 442

Query: 462 LVVAGKGHET 471
           ++  G G  T
Sbjct: 443 VLTMGAGSVT 452


>gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145]
 gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145]
          Length = 818

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 146/416 (35%), Gaps = 42/416 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    LI++ S  P  +  + I+ + +DSR +      +F  + G +++ H +I     +
Sbjct: 9   EQISALISEKSSLP--FPNQVIHRLLTDSRKVTETKNTLFFVLKG-RKNAHHYIKDLYHK 65

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  + V    Y  Q F  T   +   L   +  + L   A+   GK    ++ +TG++GK
Sbjct: 66  GVRSFV----YYDQGFDITNFPDANFLYSPDPLRALQNLAAVHRGKFSFPVIGITGSNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + V  ++ Q+             T   S  + ++++  P  I+    L  L+        
Sbjct: 122 TVVKEWLYQLLA--------YKYTIVRSPKSYNSQIGVPLSIWKMDTLYNLAIFEA---- 169

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPA 244
              S  G  +     IK   G FTN+G  H +    ++     K +LF  +  L      
Sbjct: 170 -GISQTGEMERLEKIIKPSIGVFTNIGSSHDEGFSDKEEKIAEKFKLFAHVNKLICNKEF 228

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             YA             +      S+      +++K++        +  + E ++     
Sbjct: 229 SEYA-----------PQSVDLYTWSLDDNTANLYVKEISVEDTGTSIKSTYEDREISIKI 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
           P   +    NA+    + +  G   + + + + KLH V  R E   +      I  D Y 
Sbjct: 278 PFKDKASTENAITCLLVMLVFGYSESEIEDKMSKLHPVKMRLEM-KSGINNTSIIDDSYN 336

Query: 364 HTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAI 414
              +SLE+ L  +          ++           + +   +A        D  I
Sbjct: 337 SDLSSLEIALDFLNHQQQHQNKTLILSDIQQSGLDGQQLYQTVARLLESKGVDKVI 392


>gi|317508857|ref|ZP_07966496.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Segniliparus rugosus ATCC BAA-974]
 gi|316252818|gb|EFV12249.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Segniliparus rugosus ATCC BAA-974]
          Length = 494

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 93/451 (20%), Positives = 154/451 (34%), Gaps = 39/451 (8%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
             DSR +  G +F+A+ G + DG      A A GA A + S      D    +    P  
Sbjct: 32  EHDSRKVVPGGLFLAVPGERTDGRAHAASAHAAGAVATLASDPL---DVPTVVLGEGPYP 88

Query: 94  VVDNTRKFLSLFASRLYGK--------HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 K L+L A     K            I+ VTG+SGK+S    + Q+    G +  
Sbjct: 89  TPPEESKRLALAAVAALAKANAEALVAQGLTIVGVTGSSGKTSTKDLLAQVLATKGSTVG 148

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +             P  ++L   L+             A   G         +  
Sbjct: 149 PPGSYNNELGHPWTVLRAGPESVFLVLELA-------------ARGIGHIAALARIARPR 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNA 263
            G    +G  H+    +++    AK  L E L        A++ ADD     V+  A   
Sbjct: 196 IGVVLGVGSAHLGEFGSRENIAIAKGELVEALPSAEDGGVAVLNADDPL---VLAMAART 252

Query: 264 GCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             RV+  G     +            + + T+     +      + GE Q +NAL AA +
Sbjct: 253 KARVVRYGMSESAEIRAADVRVDALARPRFTLITPQGEAPVELQVHGEHQAHNALAAAAV 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            +  G+  A   E L +      R   V   + G  +  D Y     S+   L+ +  + 
Sbjct: 313 ALECGLSVAQTAEALSRARAASPRRMQVTERADGAVVINDSYNANPESMRAGLRALVDMA 372

Query: 381 ---SGRIIVVFGCGGDRDQGKRPIM---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
               G    V G  G+  +    +    G+ A+ L+   ++   + RS       A +  
Sbjct: 373 DNSGGVSWAVLGPMGELGEDSIALHDQLGRYAVRLSVKRLLVVGDSRSAKALHTGAVLEG 432

Query: 435 GIPGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
              G  E   +  +A R   + L  +DV++V
Sbjct: 433 SWSGEAELVSDWSQAARIVADELGPRDVVLV 463


>gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A]
 gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A]
          Length = 849

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 157/408 (38%), Gaps = 35/408 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++ + L +     RE  ++ + +DSR +      +F A+   + DGH +I +  A+G 
Sbjct: 28  IEKIASLLGVEIYGGREGSVSFLLTDSRSLCFPEETLFFALRTERGDGHNYISELYARGV 87

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV     L      + S    L V ++++ L   A+    +    I+ VTG++GK+ 
Sbjct: 88  RFFVVE---ELPCEWEKLYSQASFLKVSSSKRALQRLAACHRDEFHIPIVGVTGSNGKTV 144

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+   S           T S  + ++++  P  ++L    + +           
Sbjct: 145 VKEWLYQLLSFSKRV--------TRSPRSYNSQIGVPLSVWLLNEQTQVGIFEA-----G 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +   + IK   G  T+LG  H +   + +     K+RLF ++       +   
Sbjct: 192 ISKKGEMEVLRNIIKPTIGVLTSLGDAHQENFVSMEEKCREKLRLFTDV----DVLVYPY 247

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFL 303
           DD   K +         +   +G+  K   +        K +++ ++     + K+  + 
Sbjct: 248 DD---KLIRSCVDTLSFKGKGLGWSVKDASVSLFIKDIKKSELSTTIAYIWKQEKEDSYT 304

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P   +  +Y+++    LC+ +G+   ++   +  L  V  R E V    RG  +  D Y
Sbjct: 305 IPFIDDASIYDSITCLALCLYLGVKKEVLKARMPLLEPVAMRLE-VKEGQRGCTLINDSY 363

Query: 363 AHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               NSL++ L  +         +  +V        +    +  ++A 
Sbjct: 364 NSDINSLDIALDFMNRRPDHKGRKRTLVLSDILQSAEDDEALYRRVAS 411


>gi|310643587|ref|YP_003948345.1| udp-n-acetylmuramate--l-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309248537|gb|ADO58104.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 460

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 88/424 (20%), Positives = 150/424 (35%), Gaps = 46/424 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ IA GA+ +V S+A S  +          I     T     + A  L  +   
Sbjct: 56  GHT--PEHIA-GADIVVYSTALSRDNVERVAAEELNIP----TLHRSQMLARLLNER--- 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV G  GK++ +S +  + +R       + PT  I     +      +         
Sbjct: 106 KGIAVAGAHGKTTTSSMIALVMERC-----NVDPTYIIGGEITNLGTNAKAG-------- 152

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S+ V   + E+    L  H         G  TN+  DH++ +        +    F 
Sbjct: 153 --KSEFVVAEADESDGSFLQYH------PWQGIVTNIEADHLENYDGDFNRLKSAYVQFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTIS 294
             +  +  AI+ ADD   +E++ +      RV++ G + +  +    +     +   T+S
Sbjct: 205 SQIRPDGAAIVCADDQNIREMLPQLQT---RVITYGVEHEADYMATDIQLGDRRLSFTMS 261

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G         +PG+  +YNA+     C+  GI    +   + + H    RF+ +G   
Sbjct: 262 RKGTALGTIELSVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFHGAKRRFQVLG-EG 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I  DYAH    +E  +   R  T  RII VF                 A   A+  
Sbjct: 321 NDILIIDDYAHHPTEIEATISAARA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFSEANEV 379

Query: 414 IVTDDN-PRSEDP------EKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+TD   P  E         K+   I+       I    +   I    + L   D+++  
Sbjct: 380 IITDIYSPAGEKQIAGVHSSKLVDLIVQNSNANAIYLPTKEAVIEELKDRLQPGDLVLTM 439

Query: 466 GKGH 469
           G G 
Sbjct: 440 GAGD 443


>gi|239617757|ref|YP_002941079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506588|gb|ACR80075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 446

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 156/442 (35%), Gaps = 48/442 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR ++ G +F+A+ G + DG+ FI  A+ +GA   V + +            N  +
Sbjct: 21  IRIDSRVVKIGDVFIALKGTRVDGNDFIDDALKRGAIFGVSNRS----------SDNPAV 70

Query: 93  LVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
               + +K L   A+    KH   ++ +A+TG++GK++    +  I    G      G  
Sbjct: 71  FFHPDPKKLLIE-AAAFILKHSKIKHKIAITGSNGKTTTKEILASILSDYGKVFKTPGNL 129

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +T              PI + +  S L+           S  G      D +        
Sbjct: 130 NT----------EIGIPIAILENRSQLAECDYAIFEFGTSKKGDISFLTDLVNPDIAVLL 179

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H      +      K  +FE L  K+S AI   DD   K +        C+ L  
Sbjct: 180 NVGTAHRGNFNDETELLQEKCSIFETL-QKDSTAITNGDD---KRIRSMISELSCKKLFF 235

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDS 329
           G +   + + K     N   V     G+        +    Q+ +   A    +++ I  
Sbjct: 236 GQRNGDLKIMKFDYSKNNTFVAFKAFGEMKMAKLKGIWNSGQLLDFGAAYLTALSLKI-- 293

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              L ++ ++ +       V   +    I   Y  +  S+E  +K+I  +   R   V G
Sbjct: 294 EEPLLNINRIILPFNNRFSVENIAGIILINDCYNSSLESVESAIKSIAKLKKERTFAVVG 353

Query: 390 CGGDRD---QGKRPIMGKIALDLADIAIVTDD------------NPRSEDPEKIRAEIIH 434
              ++    +     +G++      I + T D            + +S +PE++   +  
Sbjct: 354 SILEQGKYSKKTHEELGRLLNFFDHIVLYTKDTQVEAVQNTANIDFKSSNPEEVAEWLKK 413

Query: 435 GIPG---FIEKGNRIEAIRTAI 453
                     K +R  A+  AI
Sbjct: 414 NCRYGDLVYFKASRGVALEEAI 435


>gi|77462660|ref|YP_352164.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221638517|ref|YP_002524779.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332557542|ref|ZP_08411864.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
 gi|109892733|sp|Q3J4M1|MURC_RHOS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766019|sp|B9KNK0|MURC_RHOSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77387078|gb|ABA78263.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221159298|gb|ACM00278.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332275254|gb|EGJ20569.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
          Length = 470

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 133/414 (32%), Gaps = 45/414 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V+SSA    +          + VV        L   R       + +A+ GT GK+
Sbjct: 71  AAVVVISSAIKKGNPELEEARLRGLPVVRRAEMLAELMRMR-------SNIAIAGTHGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  +  + G     I     I ++  + R      +                  V
Sbjct: 124 TTTTMVATLLDKGGFDPTVING-GVIHAYGSNARAGAGEWM-----------------VV 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA       +RL          TN+  +H+++  +  A        F   +P    A+  
Sbjct: 166 EADESDGSFNRLPAT---IAIVTNIDPEHMEHWGSFDALRKG-FYDFVTNIPFYGLAVCC 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL--- 303
            D A  + ++ R  +          Q     +            V +  EG         
Sbjct: 222 TDHAEVQALVGRVTDRRIVTFGFNAQADVRAINLRYENGIAHFDVALQSEGTGHVIEGMS 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I  DY 
Sbjct: 282 LPMPGDHNVSNALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVGEVG-GVTIIDDYG 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +  +LK  R    GR+I V                    + AD+  + +     E
Sbjct: 341 HHPVEIAAVLKAARQAVKGRVIAVHQPHRYSRLHSLFDDFCTCFNEADVVAIAEVYAAGE 400

Query: 424 D--PEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
           D  P   R +++ G+     +  R  AI       R   E     D++V  G G
Sbjct: 401 DPIPGAGRDDLVAGLIAHGHRHAR--AILCEDDLERLVREQARPGDMVVCLGAG 452


>gi|167035502|ref|YP_001670733.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida GB-1]
 gi|189029021|sp|B0KFS5|MURC_PSEPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166861990|gb|ABZ00398.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida GB-1]
          Length = 482

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 148/430 (34%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAT--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG   T +        +          +
Sbjct: 119 --VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  ++            F
Sbjct: 170 AEADESDASFL---------------HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G+ +   I    V     +   T 
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRP---TVTYGFSEEADIRAINVRQQGMQTHFTV 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
           +  + +  +    +PG   V NAL    +    GI    +++ L     V  RF+    +
Sbjct: 272 LRRDCEPLEVSVNMPGNHNVLNALATIAIATDEGITDEAIIQGLSGFQGVGRRFQVYGEL 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K +R    S R+++V+                  L 
Sbjct: 332 PVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRTRDLYDDFVQVLG 391

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
            A++ ++ +  P  E+  P     ++ H I       P +IE+G   E       +L   
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERG--AELAPLVKPLLRAG 449

Query: 460 DVLVVAGKGH 469
           D+L+  G G 
Sbjct: 450 DILICQGAGD 459


>gi|84501756|ref|ZP_00999928.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
 gi|84390377|gb|EAQ02936.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
          Length = 469

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 136/412 (33%), Gaps = 43/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +V+SSA    +          + VV        L          ++ +A+ GT GK+
Sbjct: 71  AEVVVISSAIKPGNPELDEARRRGLPVVRRAEMLAELMRL-------KSNIAIAGTHGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  +    G+         T+ +    +   + + + L + +            V
Sbjct: 124 TTTTMVATLLDAGGIDP-------TVINGGIIHAYGSNARVGLGEWM-----------VV 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA       +RL          TN+  +H+D+              F   +P    A+  
Sbjct: 166 EADESDGTFNRLPAT---IAVVTNIDPEHMDHWGDFDTLRQG-FLDFVSNIPFYGLAVCC 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD-FLFP 305
            D    + ++ R  +          Q     +            V +  EG   D    P
Sbjct: 222 TDHPEVQNLVGRITDRRVATYGFNAQADIRAVNLTYRKGVAHFDVLLQAEGDRIDGCSLP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  +  DY H 
Sbjct: 282 MPGDHNVSNALSAVAVARHLGMKKDEIRTALANFGGVNRRFTRVGEVG-GVTVIDDYGHH 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED- 424
              +  +LK  R  T GR+I V                    + AD+  + +     ED 
Sbjct: 341 PVEIAAVLKAARQATEGRVIAVHQPHRYTRLHTLFEDFCACFNEADVVAIAEVYAAGEDP 400

Query: 425 -PEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
            P   R +++ G+     +  R  AI       R   E   + D++V  G G
Sbjct: 401 VPGATRDDLVAGLIRHGHRHAR--AINSEDDLERLVREQAQEGDMVVCLGAG 450


>gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
 gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
          Length = 824

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/393 (17%), Positives = 148/393 (37%), Gaps = 29/393 (7%)

Query: 27  ERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +I  + +DSR +      +F A+  ++ DGH +IP+   +G     V     +   S+
Sbjct: 21  DARIGFILTDSRSLCFPEETLFFALKSDRNDGHRYIPELYRRGVRNFAVE----VLPDSS 76

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +  ++   L V +T K L + A +        I+ +TG++GK+ V  ++ Q+        
Sbjct: 77  SSYTDANFLKVADTLKALQMLAKKHRETFHIPIIGITGSNGKTMVKEWLYQLL------- 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                  T S  + ++++  P  ++L    + +            S         + I+ 
Sbjct: 130 -MPERFVTRSPRSYNSQIGVPLSVWLLNENTQIGLFEA-----GISRPKEMDALREIIRP 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KRAHNA 263
             G  T +G  H +   + +     K+RLF          +   D+A +  ++ + +   
Sbjct: 184 TIGVLTTIGTAHQENFASIEEKCREKLRLFRH----AQTIVYCTDNALTARLISEESLEG 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLC 322
                S   +   +++ ++        V+   +   +  +  P   +  V N++    + 
Sbjct: 240 EPIAWSTKDENAQLYVSRIEKQAEHTTVSYRYKNHIEGQYTLPFIDDASVENSITCTAVA 299

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI--RTI 379
           + +GI  A + + +  L  V  R E V     G  +  D Y    +SL++ L  +  R  
Sbjct: 300 LYLGIAPAALAKRMAHLEPVAMRLE-VKEGQHGCTLINDSYNSDIHSLDIALDFMNRRPD 358

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             GR   +     ++   K   + +    LA  
Sbjct: 359 HKGRKRTLILSDIEQTGRKPADLYREVSHLAAK 391


>gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL074PA1]
 gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA1]
 gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL007PA1]
 gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL056PA1]
 gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA1]
 gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL045PA1]
 gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA1]
 gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL038PA1]
 gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA2]
 gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA2]
 gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA1]
 gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL099PA1]
          Length = 485

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 121/389 (31%), Gaps = 45/389 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L   +   P+    +   +V  D+R +  G +F+A+ G + DGH F   A   GA 
Sbjct: 5   DVATLAQWVEAAPVNDSAQVGPDVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGK 126
           A++V+     Q          P LVVD+ +  LS  A  +     +     +A+TG+SGK
Sbjct: 65  AVLVTRRTDAQ---------LPHLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + QI +  G +   +G  +           +  +  +L                
Sbjct: 116 TSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSE------------- 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G        +        N+G  H+    +++    AK  + E L   +  A++
Sbjct: 163 MGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSV-DGWAVL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D     +  R                         +     +  + + ++  +  + 
Sbjct: 222 NAADTLVAGMAPRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGES 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAI-----------GIDSALVLEHLEKLHVVPGR--FEFV 349
            +  P       A   A    A             ID   V    E L     R      
Sbjct: 282 TWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQ 341

Query: 350 GTNSRGGRIY--VDYAHTSNSLEMILKNI 376
                 G +     Y    +S+   L ++
Sbjct: 342 LRERADGLVLVEDCYNANPDSMAASLTSM 370


>gi|157373552|ref|YP_001472152.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
 gi|189082501|sp|A8FQA1|MURC_SHESH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157315926|gb|ABV35024.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
          Length = 489

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 146/416 (35%), Gaps = 44/416 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVS+A S  +          I VV    + L+      +G      +AV GT GK
Sbjct: 80  GADVVVVSTAISADNPELLEAQALRIPVVQRA-EMLAELMRYRHG------VAVAGTHGK 132

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  +  ++        PT  I                    ++       + + 
Sbjct: 133 TTTTSLIASVYGQAERD-----PTFVIGGLLNSAGTNARLGHSRY-LIAEADESDASFL- 185

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++ +    TN+  DH+D ++       +    F   LP    A++
Sbjct: 186 --------------HLQPMVSVVTNIEADHMDTYEGDFEKLKSTFIDFLHNLPFYGVAVM 231

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLF 304
             DD   +E++      G ++++ G+ +   +            + T+   G +D + + 
Sbjct: 232 CIDDPVVRELL---PKVGRKIVTYGFSEDADVQALNFVQEAYLSRFTLRRAGVEDMEVVV 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD 361
            LPG+  V NAL A  +     ID A +++ L     +  RFE +G   TN     +  D
Sbjct: 289 NLPGQHNVLNALAAIAVATEDEIDDAAIIQALADFQGIGRRFEQLGCFDTNKGEMVLVDD 348

Query: 362 YAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H  + +   +K  +      R+++V+                  L   D  ++ D   
Sbjct: 349 YGHHPSEVAATIKAAKAGWPEKRLVMVYQPHRYSRTRDLYDDFVEVLSQVDCLLLLDVYA 408

Query: 421 RSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E P        +   I   G    I   +  + +    ++L   D+++  G G+
Sbjct: 409 AGESPVPGADSRALCRSIRQRGQLDPIFVSDSEQLLSLLPDVLQAGDLVLTQGAGN 464


>gi|226307043|ref|YP_002767003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
 gi|226186160|dbj|BAH34264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
          Length = 519

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 141/432 (32%), Gaps = 49/432 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E++   ++  +     ++   V  DSR    G +F+A+ G + DGH     A+
Sbjct: 4   MTLSRIAEIVGG-TLHDVDDPSTQVTGTVEFDSRKAGPGGLFLALPGARVDGHDHAEAAV 62

Query: 65  AQ-----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           A            G  AIVV S  +    +  +  +            L L A  +  + 
Sbjct: 63  AAGAVAVLAARPVGVPAIVVPSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARAVVDEL 122

Query: 114 PEN---------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                       ++ VTG++GK+S    +  + +  G      G  +             
Sbjct: 123 AAEGSASGGGLTLVGVTGSAGKTSTKDLIAALLRERGEVVAPPGSFNNELGLPWTVLRAD 182

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
               +L      +S++GV HV                     G   N+G  H+    +++
Sbjct: 183 EKTRFLVL---EMSARGVGHVGE----------LTKIAPPKIGVVLNVGTAHLGEFGSRE 229

Query: 225 AYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLK 280
           A   AK  L E L        A++ ADD   + V   A     R++ VG           
Sbjct: 230 AIAVAKGELVEALPSAADGGVAVLNADD---RMVAAMASRTKARIVFVGQSEDCDVRATD 286

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            V     +   T++           + GE  V NAL AA + +  G+  A +   LE   
Sbjct: 287 VVVDDQARASFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADIARVLEGTK 346

Query: 341 VVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT------SGRIIVVFGCGGD 393
               R   V   + G  +  D Y    +S+   LK + ++         R   V G  G+
Sbjct: 347 AASARRMEVTERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGE 406

Query: 394 RDQGKRPIMGKI 405
                      I
Sbjct: 407 LGPESVVEHDAI 418


>gi|320531618|ref|ZP_08032560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136147|gb|EFW28153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 483

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 95/467 (20%), Positives = 162/467 (34%), Gaps = 49/467 (10%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  +   V +DSR    G +FVA+ G + DGH  +  A A GA   +VS   + +   
Sbjct: 22  GPDVSVTGPVVTDSRQATEGSLFVAVHGERTDGHAHLGSAGALGAVGAIVSDLEAARSGL 81

Query: 84  ATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVAS 131
           +  R+  P   +++V++T   L   A     +             ++A+TG+ GK++   
Sbjct: 82  SQGRTEEPSMGLVLVEDTVTALGALARTHLEELRRAAADRGERLTVVAMTGSVGKTTTKD 141

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             +Q+   SG +       +              S  YL              + + AS 
Sbjct: 142 LTRQLLAPSGPTVAPRASFNNEIGLPLTVLEADESTRYL-------------VLEMGASG 188

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G   +      L A     +G  H+    + +    AK  +   L P  +  +    +A
Sbjct: 189 PGHIAYLTGIAPLDAAGVLMVGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTTIL----NA 244

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---VCAIHNKQQVTISVEGKD--FDFLFPL 306
                   A  A  RVL+   QG+   L+    V  +  +    + + G D        +
Sbjct: 245 DDARAAAMAELAPARVLTFSSQGRAADLRTENVVLDVAARAAFDLHLPGLDEPRRVQLSV 304

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            G   V NAL AAGL +A G+   L+ E L  + +       V        +  D Y   
Sbjct: 305 AGAHNVANALAAAGLALAAGLAPELIAERLGSVSIESPHRMDVSELGGDLLLIDDSYNAN 364

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            +S+   L  +  +   R  VV         +         G++A   A  A++      
Sbjct: 365 IDSMTAALAVLPALAGDRRRVVVVSEMLELGESSAADHARTGELAAQ-AGAAMLIGIGST 423

Query: 422 SEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAG 466
            E  E        G  G    G  +   AI     +L+  D ++V G
Sbjct: 424 QEALEA------AGARGVEVVGFDDAATAISQIDALLSDGDAVLVKG 464


>gi|108759161|ref|YP_633742.1| UDP-N-acetylmuramate--L-alanine ligase [Myxococcus xanthus DK 1622]
 gi|123374163|sp|Q1D0T1|MURC_MYXXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108463041|gb|ABF88226.1| UDP-N-acetylmuramate--alanine ligase [Myxococcus xanthus DK 1622]
          Length = 472

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/470 (17%), Positives = 150/470 (31%), Gaps = 59/470 (12%)

Query: 11  FPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E++  L   +     RE  I       R ++ G  F        +GH      I   A
Sbjct: 31  IAEVLLNLGYRVSGSDLRESDITR-----RLVRMGATF-------FEGHR-AQNLIQ--A 75

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           + +V+SSA    +          I V+        L   +         +AV G+ GK++
Sbjct: 76  DVVVISSAVRKDNPEVVAARQRKIPVIPRAEMLAELMRLKYA-------VAVAGSHGKTT 128

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S V  +   +GL      PT+ +                L        S+ +   + E
Sbjct: 129 TTSMVATVLSAAGLD-----PTAVVGGKV----------NVLDSNAKLGKSELMVVEADE 173

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           +    L  H            TN+  +H+D++       +A +  F   +P     ++  
Sbjct: 174 SDGSFLHLH------PSIAIVTNIDPEHMDHYGDLDTLQSAFVE-FCNRVPFYGLNVLCL 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           D+   + ++ R      R ++ G        L+ +       +       +   +F   +
Sbjct: 227 DNPNVQALLPRIEK---RFVTYGSSHMADYRLENIQLDGFTTRFNAYRREESLGEFRVRM 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G    +NAL    +   + I    V E L +   V  RF   G  ++G  +  DY H  
Sbjct: 284 VGAHNAFNALAVIAVAEEMDIPLETVRESLAEFGGVQRRFTVRG-EAQGITVVDDYGHHP 342

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
             +   L   R     R++V F                 + + +D+  VT      E+  
Sbjct: 343 TEVLATLAGARRAFGRRVVVAFQPHRYTRTHDLMKEFTTSFNDSDVLFVTSVYAAGEERI 402

Query: 426 -----EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                + +   +  HG         R +     +  L + D+++  G G 
Sbjct: 403 HGATGDALADAVRAHGHRDVTFVEKRTDLPAALLPRLREGDLVLTLGAGD 452


>gi|212702358|ref|ZP_03310486.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
 gi|212674236|gb|EEB34719.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
          Length = 457

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 143/422 (33%), Gaps = 50/422 (11%)

Query: 67  GAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKFL-----SLFASRLYGKHPEN 116
           GA   V  +A ++ +         I  + P +V    R         + A  +  +    
Sbjct: 50  GARIAVGHAAENVGNVQVLVKSTAIAEDNPEVVEARRRNIAIIPRAEMLAELMRLRQG-- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S    I   +G   +  IG    +                      
Sbjct: 108 -VAIAGTHGKTTTTSLTASIFDTAGLDPTVIIGGRLNVYGTN------------------ 148

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +  G  H  +  +           +  I    TN+  DH+D++ T+QA  +A ++ F 
Sbjct: 149 --AHLGSGHYLIAEADESDGSFLC--LFPIINVVTNVDEDHLDHYGTRQAIDDAFVQ-FM 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P     ++  DD   + ++ R       VL+ G+         +       +  +  
Sbjct: 204 NKVPFYGLNVVCGDDPGVRALLPRVKRP---VLTYGFAADNQLRAVLLESGMTSRFEVWR 260

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + +   +   P PG   + NAL A G   A  I     +E L     V  RFEF G    
Sbjct: 261 DDQKLGEVTLPHPGRHNILNALAAIGAATAADIPFERCVEGLATFRGVGRRFEFKG-ERN 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  DY H    +   L   R +   R +VV F                   D+ D  
Sbjct: 320 GVTVIDDYGHHPAEIAATLATARQVFPNRRLVVAFQPHRFSRTQAHFGEFCKVFDVVDQL 379

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
           ++T+    SE P      E +   +       +     I+A+   + ++L   DVL+  G
Sbjct: 380 VLTEIYAASEKPIPGVSGESLAQGMRQVSETPVTYFQTIDAMVKGLDDILKPGDVLLTLG 439

Query: 467 KG 468
            G
Sbjct: 440 AG 441


>gi|5834369|gb|AAD53935.1|AF179611_19 UDP-N-acetylmuramate-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 124/367 (33%), Gaps = 39/367 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +          I VV        L          ++ +AV GT GK+
Sbjct: 68  AAVVVVSSAIHRGNPEVEAALENRIPVVRRAEMLAELMRL-------KSTVAVAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G+    I     I+S+  + RL     +                  V
Sbjct: 121 TTTSMVAALLDAGGIDPTVING-GIINSYGSNARLGDSDWM-----------------VV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RLDG        TN+  +H+D++ + +   +A +  F   +P    A + 
Sbjct: 163 EADESDGSFLRLDGT---LAIVTNIDPEHLDHYGSFEKVQDAFVE-FVSNVPFYGAAFLC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            D    + ++ R  +          Q   I    +  I    + T  + G+D D      
Sbjct: 219 IDHPVVQSILPRIRDRRLITYGFSAQAD-IRAVDITPISGGNRFTAVIRGRDGDIRRIEN 277

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRI 358
              P+PG   + NAL A G+ +   I  A + +   +   V  RF  VG          +
Sbjct: 278 IFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRVGEIKICDGSVLV 337

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    ++ +L   R     R+I V                + A + AD+  V   
Sbjct: 338 IDDYGHHPVEIKAVLSAARESAQQRVIAVVQPHRFLRLHDLMTEFQSAFNDADMVFVAPV 397

Query: 419 NPRSEDP 425
               E P
Sbjct: 398 YAAGEQP 404


>gi|146281469|ref|YP_001171622.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri A1501]
 gi|189029022|sp|A4VIH9|MURC_PSEU5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145569674|gb|ABP78780.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas stutzeri A1501]
 gi|327479644|gb|AEA82954.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri DSM
           4166]
          Length = 485

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 152/421 (36%), Gaps = 52/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVSSA +  +    +     I VV    + L+      +G      +AV GT G
Sbjct: 76  AGADVLVVSSAINSANPEVALALEQRIPVVPRA-EMLAELMRYRHG------IAVAGTHG 128

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  +    G   +F IG   T +           S  YL   ++       + 
Sbjct: 129 KTTTTSLLASVFAAGGLDPTFVIGGRLTAAG----TNAQLGSSRYL---IAEADESDASF 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +                ++ +    TN+  DH+  +             F   LP    A
Sbjct: 182 L---------------HLQPMVAVVTNIDADHMSTYGGDFGKLKKTFVEFLHNLPFYGLA 226

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDF 302
           ++  DD   +E++ +         + G+ +   +    V     +   T+  +G +  D 
Sbjct: 227 VLCVDDPVVREIIPQIGRP---TTTYGFSEDADVRAINVRQEGMRTYFTVLRDGCEPLDV 283

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIY 359
              +PG   V NAL    +    GID   +++ L +   V  RF+    +  +     + 
Sbjct: 284 SVHMPGNHNVLNALATIAIATDEGIDDEAIVQGLAEFAGVGRRFQVYGNLPVDGGSVMLV 343

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    +  ++K +R      R+++V+                  L  +++ ++ + 
Sbjct: 344 DDYGHHPREVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVQVLGESNVLLLMEV 403

Query: 419 NPRSED--PEKIRAEIIHGI-------PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
            P  E+  P     ++ H I       P ++E+G +    ++    +L   D+L+  G G
Sbjct: 404 YPAGEEPIPGADSRQLCHSIRQRGQLDPIYVERGVDLAPLVK---PLLRAGDILLCQGAG 460

Query: 469 H 469
            
Sbjct: 461 D 461


>gi|294627725|ref|ZP_06706307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598077|gb|EFF42232.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 477

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 94/429 (21%), Positives = 147/429 (34%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G  + G     R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTGTGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           P  E P          RA    G    +  G         +++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLLDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI+ NG
Sbjct: 463 VAQHIINNG 471


>gi|148549591|ref|YP_001269693.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
 gi|166224717|sp|A5W8P9|MURC_PSEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148513649|gb|ABQ80509.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
          Length = 482

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 144/435 (33%), Gaps = 63/435 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAT--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG   T +        +          +
Sbjct: 119 --VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  ++            F
Sbjct: 170 AEADESDASFL---------------HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              LP    A++  DD   +E++ +        ++ G+ +   I    V     +   T+
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRP---TVTYGFSEEADIRAINVRQQGMQTHFTV 271

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
               ++  +    +PG   V NAL    +    GI    +++ L     V  RF+    +
Sbjct: 272 LRRDREPLEVSVNMPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQGVGRRFQVYGEL 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K +R    S R+++V+                  L 
Sbjct: 332 PVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRTRDLYDDFVQVLG 391

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEML----- 456
            A++ ++ +  P  E+P       ++   I   G    I        I   +E+      
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIY-------IERGVELAPLVKP 444

Query: 457 --NKQDVLVVAGKGH 469
                D+L+  G G 
Sbjct: 445 LLRAGDILICQGAGD 459


>gi|237807301|ref|YP_002891741.1| UDP-N-acetylmuramate--L-alanine ligase [Tolumonas auensis DSM 9187]
 gi|259509784|sp|C4LA26|MURC_TOLAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237499562|gb|ACQ92155.1| UDP-N-acetylmuramate/alanine ligase [Tolumonas auensis DSM 9187]
          Length = 484

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 136/416 (32%), Gaps = 44/416 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VVS+A    +          I VV    + L+      +G      +A+ GT GK
Sbjct: 78  GASVVVVSTAIHGDNPEVMAARELRIPVVRRA-EMLAELMRYRHG------IAIAGTHGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  +  ++G       PT  I                    ++       + + 
Sbjct: 131 TTTTSLIASVYAQAGAD-----PTFVIGGLLNSAGTNARLGTSRY-LIAEADESDASFL- 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++ +    TN+  DH+D +        A    F   LP    A++
Sbjct: 184 --------------HLQPMVAIVTNIEADHMDTYGGDFTKLRATFLEFLHNLPFYGLAVV 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD   +E++     A    ++ GY +   + +++     ++ Q  + ++   F     
Sbjct: 230 CIDDPVIRELLPEIGRA---TITYGYSEDADVQVQEFVQEGSQSQFRLRLQDGSFLPLRL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVD 361
            LPG     NA     + +   I +  +++ L +   V  RF+  G    G     +  D
Sbjct: 287 NLPGRHNALNAAATVAVALEDHIPTDAIVDALAQFAGVGRRFQQYGEFDTGAGKVLLVDD 346

Query: 362 YAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    +   +          R+++VF                  L   D+ I+ D   
Sbjct: 347 YGHHPTEVRATLAATRAAWPERRLVLVFQPHRYTRTRDLYDDFAEVLAKVDVLIMLDVYA 406

Query: 421 RSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             EDP        +   I   G    I      E      ++L   DV++  G G+
Sbjct: 407 AGEDPIPGADGRSLCRSIRQRGTLDPIFVATPAEVPGVLADVLKDGDVVLTQGAGN 462


>gi|254485599|ref|ZP_05098804.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
 gi|214042468|gb|EEB83106.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
          Length = 471

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 144/415 (34%), Gaps = 47/415 (11%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE IV+SSA      +  A   +  PI+        L            ++ +AV GT 
Sbjct: 70  GAEVIVISSAIKPGNPELDAARFAGLPIVRRAEMLAELMRL---------KSNIAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V ++  + G+    +     I ++  + R+     +                
Sbjct: 121 GKTTTTTMVAELLVKGGIDPTVVNG-GIIHAYGSNARMGQGEWM---------------- 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VEA       +RL          TN+  +H+++              F   +P    A
Sbjct: 164 -VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGNFDTLRQG-FLDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF--- 300
           I   D    + ++ +  +   RV++ G+     +    +          I  + +D    
Sbjct: 219 ICCIDHPEVQALVGKITDR--RVMTYGFNAQADVRAVNLHYKAGVAHFDIQFQSEDITIK 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG+  V NAL A  +   +GI    +   L     V  RF  VG    G  I  
Sbjct: 277 DCSLPMPGDHNVSNALAAVAVSRHLGIKGEEIRAALAGFGGVNRRFTKVG-EVDGVSIID 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +  +LK  R  T GR+I V                    + AD+  + +   
Sbjct: 336 DYGHHPVEITAVLKAARQATEGRVIAVHQPHRYSRLSHHFDEFCACFNDADVVGIAEVYA 395

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
             ED  P   R +++ G+     +  R     E +   + E     D++V  G G
Sbjct: 396 AGEDPIPGASRDDLVAGLIRHGHRHARAVQSEEDLARLVKEQAGPGDMVVCLGAG 450


>gi|187933070|ref|YP_001884399.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B
           str. Eklund 17B]
 gi|229486482|sp|B2TI04|MURC_CLOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187721223|gb|ACD22444.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 460

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 145/442 (32%), Gaps = 51/442 (11%)

Query: 51  GNKEDGHLFIPQAIAQ-----GAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRK 100
           G K  G  F    I +     GA+  +  S  +++D     ++A I  N P L+      
Sbjct: 34  GYKVSGSDFKESEILKKLRLSGADIYIGHSEKNIKDVDLVVYTAAIPENNPELIYAKENN 93

Query: 101 FLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISS 155
              +  +   G   +     +A++G  GK++  S +  I  ++ L    +  G    I  
Sbjct: 94  IELMNRAEFLGSIMKGHKYNVAISGAHGKTTCTSMLSNITLKANLDPTILVGGELDIIGG 153

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
             +                S+LS                            G   N+  D
Sbjct: 154 NFRIGSSDYFITEACEYKRSFLSFF-----------------------PYVGVILNIDAD 190

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+DY++          + F +L+P +   I Y  D+  KE++ +A    C  LS G++  
Sbjct: 191 HLDYYKDIDEITETFGQ-FADLIPNDGYLIGYVGDSRVKEILFKAK---CNTLSYGFENA 246

Query: 276 FIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
            +  + +                 K FD     PGE  + NAL +  + +   ++   ++
Sbjct: 247 DVTARNITFNEKGCASFDVYKHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDII 306

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             L +      RFE+ G    G  +  DYAH    ++  L   + I   +   VF     
Sbjct: 307 CGLSECKGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVFQPHTY 365

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIE 447
                       A   AD  ++ D     E    + +    G+             +  E
Sbjct: 366 TRTKTLFDEFTDAFFDADEVVLMDIYAAREKDTGLVSSNDLGVALRAKGVKCTNVHSHDE 425

Query: 448 AIRTAIEMLNKQDVLVVAGKGH 469
           A+          D+L+  G G 
Sbjct: 426 ALEYLKNSAKPNDLLLTVGAGD 447


>gi|330973393|gb|EGH73459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 170

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/165 (38%), Positives = 91/165 (55%), Gaps = 5/165 (3%)

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + L KL    GR + +G  +    + VDYAHT ++LE +L+ +R    GR++ +FGCGGD
Sbjct: 2   KALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCGGD 60

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIR 450
           RD+GKRP+M  +   LAD   VTDDNPRSE P  I  +I  G     +      R +AI 
Sbjct: 61  RDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRGQAIA 120

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
             I   +  DV+V+AGKGHE    + NG+++   D       L +
Sbjct: 121 ELIASASADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEAASALAV 164


>gi|320527324|ref|ZP_08028509.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
 gi|320132348|gb|EFW24893.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
          Length = 459

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 136/411 (33%), Gaps = 40/411 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           ++    +  ++A I  + P  V    +K   +  + L G+  EN    +AV+GT GK++ 
Sbjct: 69  ITDDIDVVVYTAAIHPDNPEYVSSVEKKIPMMTRAELLGELMENYKHSIAVSGTHGKTTT 128

Query: 130 ASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            S +  I   +         G  + I    +  R  T          S+L          
Sbjct: 129 TSMLSYILMAANTDPTISLGGMLAHIGGNIRVGRGQTFLTEACEYTNSFLE--------- 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +K + G   N+  DH+D+ +       +  R F   + +    +I 
Sbjct: 180 --------------LKPLVGIILNVEADHLDFFKDLDDIRLS-FRRFASGIKEGGTLVIN 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
                 + ++    +    V++ G  G                  +  + +   D    +
Sbjct: 225 HSIQDKEYIIG---DFKGTVITFGEDGDMHARNIAYDALGNPGFEVYYKDEKLGDVQLLV 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL A     +IGID A + + L     V  RF++ G    G  +  DYAH  
Sbjct: 282 PGKHNVDNALAAIATAYSIGIDFAAIKQGLVSYSGVDRRFQYKG-KCNGATVIDDYAHHP 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--- 423
             +E  L   +     ++ VVF                 AL+ AD+ I+       E   
Sbjct: 341 QEIEATLNAAKHYPHKKLYVVFQPHTYSRTIALLPEFAKALENADVVILAKIYAAREVNT 400

Query: 424 ---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                E I   +              E +      L + D+ +  G G+ T
Sbjct: 401 TGVSAEDISKLMNQSKVTSFYLPTFEEIVDYLRSHLEEGDLCITMGAGNVT 451


>gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN]
 gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN]
          Length = 826

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 150/406 (36%), Gaps = 31/406 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   ++   +   E +I+ + +DSR +      +F A+   + DGH +I +   +G 
Sbjct: 5   IDKIAENINAKRLGDAEAQISFILTDSRSLCFPEETLFFALRSERNDGHHYIDELYHRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV     L D  ++I      L VDN+   L    +         I+ +TG++GK+ 
Sbjct: 65  RNFVVEQ---LPDAFSSIYKQANFLQVDNSLLALQQLTTWHRSAFTIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+               T S  + ++++  P  ++L   L+  S  G+    + 
Sbjct: 122 VKEWLSQLLS--------FDHNVTRSPKSYNSQIGVPLSVWL---LNESSEIGIIEAGI- 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +     I+   G  T+LG  H +   + +     K+ LF     K++ A++Y 
Sbjct: 170 -SKRGEMEALQKIIQPTIGVLTSLGAAHQENFSSIEEKCKEKLLLF-----KDTQALVYQ 223

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFP 305
            D           +    +L    + K   L       +    TI    +      F  P
Sbjct: 224 MDDAIAAKCIEDFSYDGTLLGWSEKNKDAALFVEKISKDTTTSTIEYCWQTATKGKFTLP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
              +  + N +  A + + +G+    + E +  L  V  R E V     G  +  D Y  
Sbjct: 284 FIDDASIQNCITCAAISLYLGMKPETLAERMPMLEPVAMRLE-VKEGQHGCTLINDSYNS 342

Query: 365 TSNSLEMILKNIRTITSGRII---VVFGCGGDRDQGKRPIMGKIAL 407
             NSL++ L  +      +     ++        Q ++ +   +A 
Sbjct: 343 DINSLDIALDFMNRRPDQQKRARTLILSDILQSGQTEKQLYCDVAE 388


>gi|208779767|ref|ZP_03247111.1| cyanophycin synthetase [Francisella novicida FTG]
 gi|208744222|gb|EDZ90522.1| cyanophycin synthetase [Francisella novicida FTG]
          Length = 940

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +GR I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGRKICVLASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|291561835|emb|CBL40635.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SS3/4]
          Length = 460

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 96/433 (22%), Positives = 156/433 (36%), Gaps = 49/433 (11%)

Query: 67  GAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENI 117
           GA+ +    A ++ D      ++A +  + P       +    L  + L G+   + E  
Sbjct: 54  GAKIVYGQRAENITDDIDAVVYTAAVHPDNPEYAAAAAKNLPILSRAELLGQLMKNYEKS 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+GT GK++  S + +I       +  I     + S   + R+  P  +++ +A  Y 
Sbjct: 114 IAVSGTHGKTTTTSMLTEILMDE-KKNPTISVGGMLDSIGGNIRVGGPE-LFVTEACEYT 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S      ++E                      N+  DH+D+ +  +   ++  R F EL
Sbjct: 172 NSFLSFFPNME-------------------IILNIEADHLDFFKDIEDIRHS-FRKFAEL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTIS 294
           LP     II +D    KE+         +V++VG      H        N+      T+ 
Sbjct: 212 LPANGVLIINSDIRDYKEI---CDGLPIKVITVGSDPAKSHYSAADVTFNENACATYTLL 268

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +GK  D     +PG   VYN+L +      +GI    +   L +      RFE  G   
Sbjct: 269 EDGKAIDTITLGVPGIHNVYNSLASIAAAHELGIRGEGIRNGLLRFTGTHRRFEKKGMIG 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  +  DYAH    +   L   +      I  VF                 AL  AD  
Sbjct: 329 -GVTVIDDYAHHPQEIAATLAAAKNYPHREIWCVFQPHTYTRTKALMEDFAKALSAADHV 387

Query: 414 IVTDDNPRSE-DPEKI----RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGK 467
           ++ D     E D   I     AE I  +          +AI T  +E     D+L+  G 
Sbjct: 388 VLADIYAARETDNLGISSGTLAEKIAALGTDTHYFPSFDAIETFLLENCVNGDLLITMGA 447

Query: 468 GHETVHIVTNGEK 480
           G     IV  GEK
Sbjct: 448 GD----IVKVGEK 456


>gi|330877132|gb|EGH11281.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964058|gb|EGH64318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 486

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 138/419 (32%), Gaps = 50/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG     +        +          ++       + +
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  +             F   LP    A+
Sbjct: 181 ---------------HLQPLVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   +E++          L+ G+ +   I    V         T+    ++  D  
Sbjct: 226 MCVDDPVVREILPLVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             +PG   V N+L    +    G+    +++ L     V  RF+    +        +  
Sbjct: 283 VNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +  ++  +R      R+++V+                  L  A++ ++ +  
Sbjct: 343 DYGHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKGH 469
           P  E+P  I       +   I +  +++   I   +E+           D+L+  G G 
Sbjct: 403 PAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQGAGD 459


>gi|322383208|ref|ZP_08057019.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152477|gb|EFX45263.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 462

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 141/430 (32%), Gaps = 51/430 (11%)

Query: 61  PQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
            + IA+GA   +   A  ++      +S  +  +   +V    R         + A  + 
Sbjct: 44  EKLIAKGARVYLGHEASHVEGADLVVYSTALPKDNVEIVAAEARNIPILHRSQMLARLMN 103

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +     +AV G  GK++ +S +  + ++ G     I     I     +      +    
Sbjct: 104 ER---KGIAVAGAHGKTTTSSMIALVMEKCGADPTYI-----IGGEIMNIGSNAKAGTGE 155

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNA 229
                   S G                             N+  DH++ +    +    A
Sbjct: 156 YVVAEADESDGTFLQYY----------------PTLALVNNIEADHLENYGGNFENLKKA 199

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
             +   ++ P    AI+  DDAY +E++    +    V++ G           +     K
Sbjct: 200 YAQFLSQVKP-GGKAIVCKDDAYIREMIPYVES---EVITYGIGSDADYQAVDIHLGDRK 255

Query: 289 QQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              ++  +G++       +PG+  V NAL    +C+  G+    V   + + H    RF+
Sbjct: 256 VSFSVLYKGENLGKIELSVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFHGAKRRFQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +G       I  DYAH    +   +   +  T  RIIVVF                   
Sbjct: 316 VMG-EINDILIIDDYAHHPTEISATISAAKA-TGKRIIVVFQPQRYTRTFFLFEQFSRCF 373

Query: 408 DLADIAIVTDDN-PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQ 459
             AD  I+TD   P  E         K+   I        E   + E +    I+ +   
Sbjct: 374 GEADEVIITDIYSPAGEKQIEGVSSAKLVDMIRQNSHANAEYMPKSEDVLAHLIDHVKPG 433

Query: 460 DVLVVAGKGH 469
           D+++  G G+
Sbjct: 434 DLVITMGAGN 443


>gi|326771700|ref|ZP_08230985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
 gi|326637833|gb|EGE38734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
          Length = 483

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 92/462 (19%), Positives = 156/462 (33%), Gaps = 39/462 (8%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDF 82
             +  +   V +DSR    G +FVA+ G + DGH  +  A   GA  AIV     +    
Sbjct: 22  GPDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSARDLGAVGAIVSDLEAARSGL 81

Query: 83  SATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVAS 131
           S       PI  ++V++T   L   A        +          ++A+TG+ GK++   
Sbjct: 82  SQGQAEEVPIGLVLVEDTVAALGALARTHLEALRQAAAEQGDRLTVVAMTGSVGKTTTKD 141

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             +Q+   SG +       +              S  YL              + + AS 
Sbjct: 142 LTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYL-------------VLEMGASG 188

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G   +  D   L A     +G  H+    + +    AK  +   L P E  AI+ ADDA
Sbjct: 189 PGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRP-EGIAILNADDA 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGE 309
            +  + + A        + G Q              +    + + G  +       + G 
Sbjct: 248 RAAAMAELAPARVLTFSARGRQADLRAENVDLDAAARAAFDLHLPGLAEPRRVQLAVAGV 307

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AAGL +A G+   LV + L  + +       +   S    +  D Y    +S
Sbjct: 308 HNVSNALAAAGLALAAGLAPELVADRLGSVSIESPHRMDISELSGDLLLIDDSYNANIDS 367

Query: 369 LEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   L  +  +   R  VV         +         G++A       ++         
Sbjct: 368 MTAALAVLPALAGDRRRVVVISEMLELGESSAADHARTGELAARAGAAMLIGI----GST 423

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E + A    G+   +   +   AI     +L   D ++V G
Sbjct: 424 QEALEAARARGV-EVVGFDDAATAISQIDALLCDGDAVLVKG 464


>gi|254993283|ref|ZP_05275473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-064]
          Length = 392

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 123/333 (36%), Gaps = 24/333 (7%)

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            Q        + P+++V++T   L   A++   +    ++A+TG++GK++    +  I +
Sbjct: 4   WQKDVPNPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVE 63

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +    +  G          +       P  +   L+      V  + +  +     +  
Sbjct: 64  TTYKVHYTGG----------NFNNHIGLPYTI---LTMPEDTEVAVLEMGMNHRHEIEVL 110

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K      TN+G  HI+Y  +++    AK+ +   L P            + + ++ 
Sbjct: 111 SKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLL 165

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              N   R L+ G  +   I+  ++ A         + E  + +   P+ GE  V+N + 
Sbjct: 166 GNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMA 224

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      IGI+   +   L+ +     R E++ T S G RI  D Y  +  +L+ +LK  
Sbjct: 225 AMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTF 283

Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +     +V     +       +  + A 
Sbjct: 284 MHMDSSGKPKYLVLADMLELGDLSTKLHQESAE 316


>gi|169629094|ref|YP_001702743.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium abscessus
           ATCC 19977]
 gi|226711870|sp|B1MP38|MURC_MYCA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169241061|emb|CAM62089.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Mycobacterium
           abscessus]
          Length = 490

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 101/443 (22%), Positives = 147/443 (33%), Gaps = 60/443 (13%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           GH     A+     G   +V + A         I    P LV  N R    L    +   
Sbjct: 61  GHD--GDALDLLPGGPTVVVTTHA--------AIPKTNPELVEANRRGIPVLLRPVVLAD 110

Query: 113 HPE--NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIY 169
                  L VTGT GK+S  S +    Q  G    F +G     +     +         
Sbjct: 111 LMAGYRTLMVTGTHGKTSTTSMLIVALQHCGYDPSFAVGGELNEAGTNAHHGSG------ 164

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                       V     + S   L Q+R + I       TN+  DH+D+  + +AY  A
Sbjct: 165 -----------DVFVAEADESDGSLLQYRPNLI-----IVTNIEADHLDHFGSVEAYS-A 207

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKK 281
               F E L  E   ++  DD  +  + +RAH  G RV   G   +           L+ 
Sbjct: 208 VFDEFAETLGSEGVLVVCLDDPGAAALARRAHERGIRVRGYGSADQAEAGDVPVAGQLRD 267

Query: 282 VCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      I + G+         +PG     NAL A      IG     VL+ L   
Sbjct: 268 WQFKDTGATAQIQLAGESAPRTMRLSVPGRHMALNALAAVVTAAEIGAAVDDVLDGLAGF 327

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRD 395
             V  RFE VG +    R++ DYAH    +  +L+ +  I +    GR +VVF       
Sbjct: 328 EGVRRRFELVG-SVESVRVFDDYAHHPTEVRTVLQAVSGIVAQQGFGRSVVVFQPHLYSR 386

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIR 450
                     AL +AD+  V D     E P       +  E I G P      +     +
Sbjct: 387 TAAFATEFADALSIADLVFVLDVYGAREAPLPGVTGALIVEQIAGAP-VHYLPDLSTVAQ 445

Query: 451 TAIEMLNKQDVLVVAGKGHETVH 473
                    D+++  G G  T+ 
Sbjct: 446 QVAAATAPGDLVITMGAGDVTLQ 468


>gi|254374520|ref|ZP_04990001.1| cyanophycin synthetase [Francisella novicida GA99-3548]
 gi|151572239|gb|EDN37893.1| cyanophycin synthetase [Francisella novicida GA99-3548]
          Length = 940

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +GR I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGRKICVLASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|157827094|ref|YP_001496158.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
 gi|166224722|sp|A8GW94|MURC_RICB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157802398|gb|ABV79121.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
          Length = 478

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 149/438 (34%), Gaps = 63/438 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   PQ I      +VVSSA +  +      +    PI+     R+   + A  +  K 
Sbjct: 64  GHT--PQNITN-VSYVVVSSAINRNNPEVKEALERKIPII-----RRA-EMLAELMRLKC 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G+ GK++  S V  + + +GL        + I+    +NR T          
Sbjct: 115 S---VAVSGSHGKTTTTSLVACLFEAAGLH------PTVINGGIINNRSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++      NA  R 
Sbjct: 166 IAEADESDATFI---------------SIPSTIAIITNIDPEHLDYYKDFDTLINA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    +E++        +V++ G      H+       +    T 
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRELVNNITER--KVITYGIDSDDAHITAFNISTDITSSTF 267

Query: 294 SVE-------GKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            V+       G         P PG   + N+L A  + + +      +         V  
Sbjct: 268 DVKISLPNVSGVTIIEKITIPTPGRHNILNSLAAISVGVELDFGIKAIKNGFNSFKGVKR 327

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPI 401
           RF  V   ++   +  DYAH    ++  L   + I     G++I +F             
Sbjct: 328 RFTKVAEYNQ-ASVIDDYAHHPEEIKATLSTAKNIANKQHGKVIAIFQPHRYSRMQHLFD 386

Query: 402 MGKIALDLADIAIVTDDNPRSED----------PEKIRAEIIHGIPGFIEKGNRIEAIRT 451
                 D AD+  +TD     E            + I     H    F+ K +  +++  
Sbjct: 387 DFMRCFDDADLLYITDVYAAGESHIEGISGQSLIDNIIKLKYHNQANFLAKLD--DSLEV 444

Query: 452 AIEMLNKQDVLVVAGKGH 469
            +   +  D++++ G G+
Sbjct: 445 IMNKASPGDMIIMMGAGN 462


>gi|220904380|ref|YP_002479692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868679|gb|ACL49014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 472

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 139/406 (34%), Gaps = 39/406 (9%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L           +  V +DSR    G +FV + G++ DGH F   A+ QGA A++ +  
Sbjct: 13  GLPGTLPDAENTVLTSVVTDSRDAGPGALFVCVPGSRVDGHDFAAAAVRQGAAAVLAAGP 72

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                       N P+LVV +T K L   A     +    ++AVTGT+GK+++   + Q+
Sbjct: 73  LPGI--------NVPVLVVPDTVKALGQLAGLWRDRTKARVVAVTGTAGKTTLKEVLAQV 124

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G ++      +      +    T     +               +    S  G   
Sbjct: 125 LSLGGKTARNAMNHNNQIGMPRAVLGTDGDEKFWI-------------MEAGISQQGDMD 171

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                ++       N G  H +    ++     K RL + L  K    ++ AD     ++
Sbjct: 172 DLGSVLRPDIAVVLNAGTGHTEGLG-EKGVAWHKARLLKYL-AKGGKGLVCADYP---DL 226

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----------VEGKDFDFLFP 305
           ++ A      +      G+    + V A    Q   ++           + G++FD   P
Sbjct: 227 VREARATETDICFFSGSGRDAEFRAVYAGAAPQGAAVTPSDAYGLYRLWLGGREFDVTAP 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G +   N    A +   +G+D   + + L +  +   RF  V   S    I   Y   
Sbjct: 287 FRGAYGAENVAAVAAVAHMLGLDLQAIRQGLAQARMPAQRFNQVQAGSW-LLIDDTYNAN 345

Query: 366 SNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLA 410
             S+  +L       +GR  V V G   +           +   LA
Sbjct: 346 PLSMGRMLDAAAERAAGRPFVAVLGAMLELGSQAAMEHEALGRRLA 391


>gi|134302121|ref|YP_001122090.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049898|gb|ABO46969.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 940

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGVN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +G+ I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGKKICVLASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|78484929|ref|YP_390854.1| UDP-N-acetylmuramate--alanine ligase [Thiomicrospira crunogena
           XCL-2]
 gi|109892753|sp|Q31I43|MURC_THICR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78363215|gb|ABB41180.1| UDP-N-acetylmuramate--L-alanine ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 461

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 123/363 (33%), Gaps = 39/363 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VVS+A +  +        + I V+        L   R         +A+ GT GK++ 
Sbjct: 67  VVVVSTAIAKDNPEVCFAKESRIPVIPRAAMLAELMRMRFG-------IAIAGTHGKTTT 119

Query: 130 ASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            S    I    G   +F IG          D+     S  YL   ++       + +   
Sbjct: 120 TSLASAILTEGGLDPTFVIGGKLN----QFDSNARLGSSQYL---IAEADESDASFL--- 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        +  +    TN+  DH++ +Q   A        F   LP    AI+  
Sbjct: 170 ------------HLSPMMSVVTNIDEDHMETYQGDYANLEQTFIEFIHRLPFYGVAIVCI 217

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPL 306
           DD   + ++ +      ++ + G+ +   I   +V          +      +F  +   
Sbjct: 218 DDQNIQNMLPKLSR---KIRTYGFSESADIRATEVLHQGLSMHFNVKANDLPEFSVVLNQ 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYA 363
           PG+  V NAL A  + + + +    + + L     V  RFE   + S G     +  DY 
Sbjct: 275 PGKHNVLNALAAITVALELDVSIESIQKALAGFGGVGRRFEVYPSRSIGHKNVTLVDDYG 334

Query: 364 HTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    LE  L   R      R+++VF                 AL  AD+ ++ D  P  
Sbjct: 335 HHPTELEATLSTARMAFPEKRLVLVFQPHRYSRTRDLFDEFVQALQHADLLVLLDVYPAG 394

Query: 423 EDP 425
           E P
Sbjct: 395 EAP 397


>gi|254464869|ref|ZP_05078280.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
 gi|206685777|gb|EDZ46259.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
          Length = 465

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 144/414 (34%), Gaps = 47/414 (11%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +V+SSA      +         P++   +    L            ++ +A+ GT G
Sbjct: 71  AAVVVISSAIKPGNPELDEARLRGLPVVRRADMLAELMRL---------KSNVAIAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + + +    +G     I     I ++  + R+     +                 
Sbjct: 122 KTTTTTMMAE-LMVAGGFDPTIVNGGIIHAYGSNARMGQGEWM----------------- 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++        +  +  F   +P    A+
Sbjct: 164 VVEADESDGSFNRLPAT---IAVVTNIDPEHMEHWGDFDRLRDGFLE-FVSNIPFYGIAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
              D A  + ++ R  +   RV++ G+     +    +          + ++ +D     
Sbjct: 220 CCTDHAEVQALVGRISDR--RVVTYGFNAQADVRAVNLTYKAGVAHFDVVLQAEDRVIEG 277

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG+  V NAL A  +   +G++S  + E L     V  RF  VG    G  I  D
Sbjct: 278 CTLPMPGDHNVSNALSAVAVARHLGMNSTEIREALAAFGGVNRRFTKVG-EVNGVTIIDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H    +  +LK  R    GR+I V                    + AD+  + +    
Sbjct: 337 YGHHPVEIAAVLKAARQACEGRVIAVHQPHRYSRLSNLFEDFCACFNEADVVAIAEVFSA 396

Query: 422 SEDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
            EDP     R +++ G+     +  R     E +   + E     D++V  G G
Sbjct: 397 GEDPIEGASRDDLVAGLIRHGHRHARALLNEEDLERLVREQARPGDMVVCLGAG 450


>gi|118497702|ref|YP_898752.1| cyanophycin synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323674|ref|ZP_03057450.1| cyanophycin synthetase [Francisella tularensis subsp. novicida FTE]
 gi|118423608|gb|ABK89998.1| cyanophycin synthetase [Francisella novicida U112]
 gi|194322038|gb|EDX19520.1| cyanophycin synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 940

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +GR I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGRKICVLASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|56708207|ref|YP_170103.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670678|ref|YP_667235.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|187931944|ref|YP_001891929.1| cyanophycin synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457311|ref|ZP_03665784.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370694|ref|ZP_04986699.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875020|ref|ZP_05247730.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604699|emb|CAG45763.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321011|emb|CAL09146.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568937|gb|EDN34591.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|187712853|gb|ACD31150.1| cyanophycin synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254841019|gb|EET19455.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159425|gb|ADA78816.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 940

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +G+ I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGKKICVLASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|332678416|gb|AEE87545.1| Cyanophycin synthase [Francisella cf. novicida Fx1]
          Length = 940

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +GR I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGRKICVLASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|156502247|ref|YP_001428312.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290954334|ref|ZP_06558955.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312242|ref|ZP_06803040.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|156252850|gb|ABU61356.1| UDP-N-acetylmuramyl tripeptide synthase with glutame ligase domain
           [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 940

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +G+ I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGKKICVLASPGDRRDEDIAELAKTATPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|89256191|ref|YP_513553.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314664|ref|YP_763387.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|167009774|ref|ZP_02274705.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367519|ref|ZP_04983545.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|89144022|emb|CAJ79270.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129563|gb|ABI82750.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253335|gb|EBA52429.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           257]
          Length = 940

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +G+ I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGKKICVLASPGDRRDEDIAELAKTATPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|94501895|ref|ZP_01308405.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
 gi|94425948|gb|EAT10946.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
          Length = 485

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/418 (19%), Positives = 142/418 (33%), Gaps = 49/418 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A ++++          I +V    + L+      +G      +AV GT GK+
Sbjct: 79  ANVVVVSTAINVENPEIQYAQQNRIPIVRRA-EMLAELMRYRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  I            PT  I                L  A +     G  ++  
Sbjct: 132 TTTSLVASILAE-----GDKDPTFVIGGR-------------LTSAGTNAQLGGSRYLVA 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA            ++ +    TN+  DH+D +             F   LP    A++ 
Sbjct: 174 EADESDAS---FLHLQPMVSIVTNIEADHMDTYGGDFNRVKKTFIEFLHNLPFYGLAVLC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLF 304
            +D   +E++         V++ G+      + +++         T+   G  KD     
Sbjct: 231 IEDETIREILPEVSRP---VVTYGFSDSADYYAQEIKQEGIYTSFTVKRPGDNKDLQIRL 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVD 361
            +PG   V NAL A  +    GI    ++  LEK   V  RF+  G          +  D
Sbjct: 288 RMPGRHNVLNALSAIAVATDEGIADDAIIRALEKFQGVGRRFQICGEYPLQDDSVMLVDD 347

Query: 362 YAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    + + +  IR      R+++VF                  L   D  ++ D   
Sbjct: 348 YGHHPTEVAVTIDAIRKGWPEKRLLMVFQPHRYTRTRDLYDDFVQILSEVDSLVLLDVYS 407

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTA------IEMLNKQDVLVVAGKGH 469
             ED  +I       +   I    R++ I   R+A       +++   D+L+  G G 
Sbjct: 408 AGED--EIPGADGRSLARSIRGRGRVDPIFVPRSANVGDVLKDIVQPGDILITQGAGD 463


>gi|254431165|ref|ZP_05044868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197625618|gb|EDY38177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 484

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 91/461 (19%), Positives = 152/461 (32%), Gaps = 63/461 (13%)

Query: 31  NEVSS---DSRHIQAGWIFV---AI---VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
             VS    D   IQ G ++V   A+    G  +D    + +   +GA A+V+ +      
Sbjct: 36  TGVSYLPGD---IQPGHLYVQPSALSWGRGYDKD-RESLQRVKQRGARAVVLDA------ 85

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A +     + +  +T   L+             ++ VTGT GKS+    +  +  R G
Sbjct: 86  IPAEVPEGLSVYLAPDTSLALAQLGQAARALASHPLVCVTGTVGKSTTKRGLAILLARCG 145

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD- 200
            +                         Y    L+   +   T  SV   S  L ++ L  
Sbjct: 146 RTH----------------ESQRNFNHYHGVTLTLADTPKDTEFSVLEFSSDLPRYTLPK 189

Query: 201 --GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                      T +  DH D + T +A  + K  LF  L P E  A++  D  Y   +  
Sbjct: 190 ALIAAPDVAVITEIQYDHTDCYPTLEAIADQKSLLFRGLKP-EGTAVLNRDSPYFARMHA 248

Query: 259 RAHNA-GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            A +    RVL+ G      + L+      +  QV      +   +  PLPG   V N+L
Sbjct: 249 AARSYGAARVLTFGCSPLADVALQDCSRQRSGWQVRARCLDQSLTYTLPLPGRHDVRNSL 308

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDY--AHTSNSLEMIL 373
                 +A+G D    L     L  +P          +GG +  +D   +    SL   L
Sbjct: 309 AMLAGVVALGQDPNRCLAAFSALQPLPRHCALEHLAVQGGEVRLIDDSFSSNPASLRAAL 368

Query: 374 KN---IRTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVTDDNPRSEDPE 426
           +        + GR ++V G   +  +    +   +A    L   D       + R     
Sbjct: 369 ETLALQAEGSPGRRLLVLGAIDELGERSDALHASLADLILLHRIDRVYAYGSHTR----- 423

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRT---AIEMLNKQDVLVV 464
                    +P  +   +  EA       +  L   D LV+
Sbjct: 424 ----HTCAALPDHLVALHTTEARELTQVLMADLQPDDWLVL 460


>gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha153]
          Length = 445

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 165/418 (39%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ ADDA+ + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|226357935|ref|YP_002787675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (MurE synthetase) (UDP-N-acetylmuramyl-tripeptide
           synthetase); Mur ligase family protein; Cyanophycin
           synthetase [Deinococcus deserti VCD115]
 gi|226320178|gb|ACO48171.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (MurE synthetase)
           (UDP-N-acetylmuramyl-tripeptide synthetase); putative
           Mur ligase family protein; putative Cyanophycin
           synthetase [Deinococcus deserti VCD115]
          Length = 724

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 137/380 (36%), Gaps = 33/380 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ILA+TGT+GKS+ A  V  I   +G +   +G T+T   +  D R+ +        A  
Sbjct: 328 PILALTGTNGKSTTARMVAHILAHAGHT---VGFTNTSGVYVADKRIHSGDATGPKSARM 384

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LF 234
            L    VT   +E +  GL +  L   +   G+  N+  DH+           A+++ L 
Sbjct: 385 VLRHPAVTVAVLETARGGLLREGLGFDRADVGAVLNVKSDHLGLGGVNTVRDLARVKSLV 444

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--------KFIHLKKVCAIH 286
             ++     +++ ADD  +  + + A          G  G            L  VC   
Sbjct: 445 VRVVASSGLSVLNADDPLTLGMRRVARGRIALFSISGLDGNKALRDHIDAGGLAVVCEPQ 504

Query: 287 NKQQVTISVEGK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               V    +G          D          F V NAL AA +C+ + +   ++   L 
Sbjct: 505 ADGDVIAVYDGGERQSLMRAADIPATLGGLARFNVENALAAAAMCLGLDLTLEVIRSALT 564

Query: 338 KLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGD 393
                  +        ++ G R+ +DYAH  ++L      +  +    GR+I +    GD
Sbjct: 565 TFTSSFEQSPGRLNVHDAHGFRVILDYAHNPDALAAQRALLHRLRSPGGRLIGMVSVPGD 624

Query: 394 RDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRI------ 446
           R       +G+IA    D  +  +  + R     +  + +  G         RI      
Sbjct: 625 RRDDDIREVGEIAAGTFDELVFREGPDGRGRPRGETMSLMAEGARSAGFASERIHLVLEE 684

Query: 447 -EAIRTAIEMLNKQDVLVVA 465
            +A+   + +    D+ V+ 
Sbjct: 685 SDAVDATLNLARPGDIAVIM 704


>gi|281356125|ref|ZP_06242618.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
 gi|281317494|gb|EFB01515.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
          Length = 459

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 90/482 (18%), Positives = 163/482 (33%), Gaps = 51/482 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           MK      K+  E           WR+     +   V +D+R    G +F+A+ G K D 
Sbjct: 1   MKNPTFTGKELAEATRG------SWRDGRLPAEAVAVYTDTRVAGEGRLFLALPGEKFDA 54

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
           H ++ QA+A      +       +          P+L VD+T       A+    + PE 
Sbjct: 55  HDYLAQAVAA-GAGGLCIRRDRAEKLPEPCP--VPVLEVDDTLAAYQKIANFHRRRFPEL 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG+ GK+SV   V+ I   +      +      ++     +            L 
Sbjct: 112 KLVAVTGSVGKTSVKEIVRAILTAASSPEAVLYTEGNTNNQIGVPQN----------LLR 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S      + +  + HG  +      + +A    ++   H+++  + +     K  +F 
Sbjct: 162 LNSRHRYAVIEMGTNHHGEIEPLSRMAEPLASLVNSIAPCHLEFLGSLEGVAREKSHIFC 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L P+   A+I AD    + +   A +                 + +       +  +S 
Sbjct: 222 GL-PESGAAVIPADGPAVEVLETAAESYRVFRFGEDVSRCDAAARYLGGTLEGSRFELSF 280

Query: 296 E-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR---FEFVGT 351
             G+ F   + L G  Q  NA  AA L +AIGI    +         V  R        T
Sbjct: 281 RTGERFTLEWALTGRHQARNAAAAAALAVAIGIPPETIAAG-----AVHARLPGMRSKVT 335

Query: 352 NSRGGR-IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-----GGDRDQGKRPIMGKI 405
              G   +   Y     S+   L N+        +V+        GG      R ++   
Sbjct: 336 RLDGVTYVNDAYNANPGSMRAALANLAEFADPARLVLVLGEMRELGGSEAAEHRALVENA 395

Query: 406 ALDLADIAIVT-----DDNP------RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 + ++T      + P      RSE+  +  A+++        KG+R  A+  A+ 
Sbjct: 396 LQTFPGVRLLTVGRAFGECPGALRFDRSEEVGETLAKLVRDGDLVFAKGSRGIAVELALP 455

Query: 455 ML 456
             
Sbjct: 456 EA 457


>gi|325132969|gb|EGC55646.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M6190]
 gi|325136990|gb|EGC59587.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M0579]
          Length = 506

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 153

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 154 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 195

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 196 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 252 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 309 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 368

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 429 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 486

Query: 465 AGKG 468
            G G
Sbjct: 487 MGAG 490


>gi|315645748|ref|ZP_07898872.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
 gi|315279226|gb|EFU42536.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
          Length = 458

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/424 (19%), Positives = 149/424 (35%), Gaps = 46/424 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q   QGA+ +V S+A S  +          I V         + A  L  +   
Sbjct: 55  GHT-AEQV--QGADLVVYSTALSKDNVERVEAEKLNIPV----LHRAQMLARLLNER--- 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV G  GK++ +S +  + +  G     + PT  I     +      +         
Sbjct: 105 KGVAVAGAHGKTTTSSMIALVMEECG-----VDPTFIIGGEIMNVGTNAKAGEG------ 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + V   + E+    L  H         G   N+  DH++ ++       A    F 
Sbjct: 154 ----EHVVAEADESDGSFLQYH------PWLGVVLNIEADHLENYEGDFNRLKAAYVQFL 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
             +  +  A++ ADD   + ++    +  C V + G      +      + ++Q    + 
Sbjct: 204 SQIKPDGTAVVCADDHNIQAIL---PDLKCNVTTYGIHSDAEYTATNLVLGDRQVSFMML 260

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G +       +PG+  VYNA+     C+  GI    ++E + K +    RF+ +G  +
Sbjct: 261 HNGMELGTVELSVPGKHNVYNAMATVICCLKGGISFEAIVEAIVKFNGAKRRFQVLG-EA 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  +  DYAH    +E  +   +  T  RII VF                 A   AD  
Sbjct: 320 DGILVIDDYAHHPTEIEATISAAKA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFSEADEV 378

Query: 414 IVTDDN-PRSEDP------EKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+TD   P  E         K+   I+     G      + + +    + + + D+++  
Sbjct: 379 IITDIYSPAGEKQIEGISSGKLVELIVQNSNAGARYLPTKEDVLNDLKDRVKEGDLVLTM 438

Query: 466 GKGH 469
           G G 
Sbjct: 439 GAGD 442


>gi|126461553|ref|YP_001042667.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|166224719|sp|A3PHS9|MURC_RHOS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126103217|gb|ABN75895.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 470

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 133/414 (32%), Gaps = 45/414 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V+SSA    +          + VV        L   R       + +A+ GT GK+
Sbjct: 71  AAVVVISSAIKKGNPELEEARLRGLPVVRRAEMLAELMRMR-------SNIAIAGTHGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  +  + G     I     I ++  + R      +                  V
Sbjct: 124 TTTTMVATLLDKGGFDPTVING-GVIHAYGSNARAGAGEWM-----------------VV 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA       +RL          TN+  +H+++  +  A        F   +P    A+  
Sbjct: 166 EADESDGSFNRLPAT---IAIVTNIDPEHMEHWGSFDALRKG-FYDFVTNIPFYGLAVCC 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL--- 303
            D A  + ++ R  +          Q     +            V +  EG         
Sbjct: 222 TDHAEVQALVGRVTDRRIVTFGFNAQADVRAINLRYENGIAHFDVALQSEGAGHVIEGMS 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I  DY 
Sbjct: 282 LPMPGDHNVSNALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVGEVG-GVTIIDDYG 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +  +LK  R    GR+I V                    + AD+  + +     E
Sbjct: 341 HHPVEIAAVLKAARQAVKGRVIAVHQPHRYSRLHSLFDDFCTCFNEADVVAIAEVYAAGE 400

Query: 424 D--PEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
           D  P   R +++ G+     +  R  AI       R   E     D++V  G G
Sbjct: 401 DPIPGAGRDDLVAGLIAHGHRHAR--AILCEDDLERLVREQARPGDMVVCLGAG 452


>gi|308070406|ref|YP_003872011.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
 gi|305859685|gb|ADM71473.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
          Length = 459

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 89/424 (20%), Positives = 150/424 (35%), Gaps = 46/424 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ IA GA+ +V S+A S  +          I     T     + A  L  +   
Sbjct: 55  GHT--PEHIA-GADIVVYSTALSRDNVERVAAEELNIP----TLHRSQMLARLLNER--- 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV G  GK++ +S +  + +R       + PT  I     +      +         
Sbjct: 105 KGIAVAGAHGKTTTSSMIALVMERC-----NVDPTYIIGGEITNLGTNAKAG-------- 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S+ V   + E+    L  H         G  TN+  DH++ +        +    F 
Sbjct: 152 --KSEFVVAEADESDGSFLQYH------PWQGIVTNIEADHLENYDGDFNRLKSAYVQFL 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTIS 294
             +  +  AI+ ADD   +E++ +      RV++ G + +  +    +     +   T+S
Sbjct: 204 SQIRPDGAAIVCADDQNIREMLPQLQT---RVITYGVEHEADYMATDIQLGDRRLSFTMS 260

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G         +PG+  +YNA+     C+  GI    +   + + H    RF+ +G  S
Sbjct: 261 RKGTALGTIELSVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFHGAKRRFQVLG-ES 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I  DYAH    +E  +   R  T  RII VF                 A   A   
Sbjct: 320 NDILIIDDYAHHPTEIEATISAARA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFSEASEV 378

Query: 414 IVTDDN-PRSEDP------EKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+TD   P  E         K+   I+       I    +   I    + L   D+++  
Sbjct: 379 IITDIYSPAGEKQIEGVHSSKLVDLIVQNSNANAIYLPTKEAVIEELKDRLQPGDLVLTM 438

Query: 466 GKGH 469
           G G 
Sbjct: 439 GAGD 442


>gi|24375703|ref|NP_719746.1| UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
 gi|38372363|sp|Q8E9P8|MURC_SHEON RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24350637|gb|AAN57190.1|AE015855_1 UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
          Length = 488

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 151/428 (35%), Gaps = 49/428 (11%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            G   + Q     A+ +VVS+A + Q+          I +V    + L+      +G   
Sbjct: 72  HGADNVQQ-----ADVVVVSTAINPQNPEIIAAKELRIPIVRRA-EMLAELMRYRHG--- 122

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S +  +  ++G       PT  I                    +
Sbjct: 123 ---VAIAGTHGKTTTTSLIASLYGQAGRD-----PTFVIGGLLNSAGTNARLGTSRY-LI 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D +        +    F
Sbjct: 174 AEADESDASFL---------------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
              LP    A++  DD   +E+M R       +++ G++    +         ++ + T+
Sbjct: 219 LHNLPFYGVAVVCIDDPVVREIMPRISR---HIVTYGFRDDADVQALNFSQQGHQCRFTV 275

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF+ +G  
Sbjct: 276 RRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKF 335

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T      +  DY H  + +   +K  R      R+++ +                  L 
Sbjct: 336 ATPKGEVMLVDDYGHHPSEVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEVLS 395

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D  ++ D     E P        +   I + G    I   +  +      ++L + D+
Sbjct: 396 QVDCLLLLDVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPEQLAEVLPDVLQEGDL 455

Query: 462 LVVAGKGH 469
           L+  G G+
Sbjct: 456 LLTQGAGN 463


>gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum rubarum]
          Length = 495

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 145/431 (33%), Gaps = 55/431 (12%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    +     VS+D+R ++   +FVA+ G+  DGH ++ +A  +GA A +VS +     
Sbjct: 25  PALPDDTPFAGVSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARAALVSRSVEATG 84

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQ 138
                    P+L+V +TR  L   A  +  K     + ++ +TGT+GK++    +  +  
Sbjct: 85  ---------PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLS 135

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G                  NR    + I + + L     +    V         D   
Sbjct: 136 AEGRR-------------PHTNRQNWNNEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMDY 182

Query: 199 LDGIKL-IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           L  + +  A   T++G  H++   + +  +  K  L   + P     ++  D  +     
Sbjct: 183 LSSVLVSDASIVTSVGEGHLETLGSVEGVWKEKSHLLNWVRP-GGAIVLPLDLLFRYPAS 241

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI----------------SVEGKDFD 301
                   R   V          +      +    +                +   + F 
Sbjct: 242 PVFRERQRRFFFVELDPDPGDSARGPRSVPEGSTILTGTLRKEEGGKWILSGTTGPESFS 301

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P P      +AL+A     A+G+       HLE    +PGR +   T      +   
Sbjct: 302 WKMPSPSSILAMDALLALAAGNALGVSLQEGANHLENFSPLPGRMQEKRTPEGALLLLDH 361

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y     SL    +    +      +            R   GK+   L D+  + +D+PR
Sbjct: 362 YNSNPLSLRGAFQWCAEVWKKEATL-----------SRGEPGKLLAVLGDMLELGEDSPR 410

Query: 422 -SEDPEKIRAE 431
              +  +I AE
Sbjct: 411 LHREAGRIAAE 421


>gi|257483446|ref|ZP_05637487.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330987135|gb|EGH85238.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011578|gb|EGH91634.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 486

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 140/419 (33%), Gaps = 50/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG     +        +          ++       + +
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 181 ---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   +E++ +        L+ G+ +   I    V         T+    ++  D  
Sbjct: 226 MCIDDPVVREILPQVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             +PG   V N+L    +    G+    +++ L     V  RF+    +        +  
Sbjct: 283 VNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +  ++  +R      R+++V+                  L  A++ ++ +  
Sbjct: 343 DYGHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKGH 469
           P  E+P  I       +   I +  +++   I   +E+           D+L+  G G 
Sbjct: 403 PAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQGAGD 459


>gi|18311195|ref|NP_563129.1| cyanophycin synthetase [Clostridium perfringens str. 13]
 gi|18145878|dbj|BAB81919.1| cyanophycin synthetase [Clostridium perfringens str. 13]
          Length = 874

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 167/406 (41%), Gaps = 31/406 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G   F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIG---FNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI- 217
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 218 -DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVKS-LVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVAAGLCIA 324
           +     L      +  + + +   GK++         F      +  + NA+ A    + 
Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +D  ++ + L++        R  F   +  G  + +DYAH  +  ++++ +++ +   
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVNGINVILDYAHNIDGYKVVIDSLKNLGLK 756

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI----- 436
            I  + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+     
Sbjct: 757 NITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNR 816

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                    +  EA+R  +++  K + +++  + +E+++ + N  K
Sbjct: 817 KDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFK 862


>gi|254369189|ref|ZP_04985201.1| hypothetical protein FTAG_00136 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122139|gb|EDO66279.1| hypothetical protein FTAG_00136 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 940

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPVAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +G+ I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGKKICVLASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|170728851|ref|YP_001762877.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella woodyi ATCC
           51908]
 gi|229620422|sp|B1KKX6|MURC_SHEWM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169814198|gb|ACA88782.1| UDP-N-acetylmuramate--alanine ligase [Shewanella woodyi ATCC 51908]
          Length = 489

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 149/416 (35%), Gaps = 44/416 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVS+A    +          I VV    + L+      +G      +AV GT GK
Sbjct: 80  GADVVVVSTAIHADNPELLEAQALRIPVVRRA-EMLAELMRYRHG------VAVAGTHGK 132

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  +  ++        PT  I                    ++       + + 
Sbjct: 133 TTTTSLIASVYGQAERD-----PTFVIGGLLNSAGTNARLGNSRY-LIAEADESDASFL- 185

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++ +    TN+  DH+D ++       +    F   LP    A++
Sbjct: 186 --------------HLQPMVSVITNIEADHMDTYEGDFERLKSTFIDFLHNLPFYGIAVM 231

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLF 304
             DD   +E++    + G ++++ G+ +   +          + + T+   G +D + + 
Sbjct: 232 CIDDPVVRELL---PSVGRKIVTYGFSEDADVQALNFVQDGYRSRFTLRRTGVEDVEVMV 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD 361
            LPGE  V NAL A  +     I+   +++ L     +  RFE +G   T+     +  D
Sbjct: 289 NLPGEHNVLNALAAIAVASEDEIEDEAIIQALADFEGIGRRFEQLGCFDTDRGEVVLVDD 348

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H  + +   +K  +      R+++++                  L   D  ++ D   
Sbjct: 349 YGHHPSEVAATIKAAKLGWPEKRLVMIYQPHRYSRTRDLYEDFVEVLSQVDCLLLLDVYS 408

Query: 421 RSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E      D   +   I + G    I   ++ + +    ++L + D+L+  G G+
Sbjct: 409 AGEAAIPGADSRALCRSIRLRGQLDPIFVADQEQLLTLLPDVLQEGDLLLTQGAGN 464


>gi|117924062|ref|YP_864679.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetococcus sp. MC-1]
 gi|166224701|sp|A0L5N0|MURC_MAGSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117607818|gb|ABK43273.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetococcus sp. MC-1]
          Length = 476

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 146/437 (33%), Gaps = 60/437 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    QAI  GA+A+V SSA    +          I VV    + L+      YG    
Sbjct: 56  GHT--AQAIE-GADAVVTSSAVKRDNPEVMAARALRIPVVPRA-EMLAELMRLKYG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKA 173
             +A+ GT GK++  S V  +   + +    +  G   ++ S A                
Sbjct: 108 --IAIAGTHGKTTTTSLVAALLGAADMDPTVVNGGIVKSLGSNAH--------------- 150

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 QG   V+    S G        +       TN+  +H++++ T  A   A  R 
Sbjct: 151 ----VGQGAFLVTEADESDGSFLK----LSPTIAVVTNMDPEHMNHYGTFDAVREA-FRG 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
           F   +P    A++  D      + +   +   RV++ G   +  +    +          
Sbjct: 202 FVSKIPFYGLAVLCGDHPEVSLLAEEMLDK--RVITYGLSDQVDLQAVHIRQEGIVTHFE 259

Query: 293 I----SVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +       G++          +PG   V N L A  + + + +     +  L     V  
Sbjct: 260 VIQHDRHHGRESRSLGTIQLNMPGCHNVSNTLAALAVAMELAVPWERCVRALAGFGGVQR 319

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG 403
           RF+ +   +    I  DYAH    +   ++ +R      R++ VF               
Sbjct: 320 RFDLLHQEA-AITIIDDYAHHPVEIAATMEAVRNGYPQQRVVAVFQPHRYSRVLDHMHDF 378

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF--IEKGNRIEAIRTAIEM 455
                 AD+ +V +     E P      E+    ++ GI      +     +  R  +++
Sbjct: 379 CRCFKNADVVLVDEIYRAGEQPPEGPLGEQGAIVLVEGIRRHSSAQVALLADDARWGLDL 438

Query: 456 ---LNKQDVLVVAGKGH 469
              L   DV+V  G G 
Sbjct: 439 GGQLKPNDVVVFLGAGD 455


>gi|319789828|ref|YP_004151461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114330|gb|ADU96820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
          Length = 432

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 130/372 (34%), Gaps = 37/372 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   V  DSR I  G +F+ + G + DGHLFI  A ++GA   +      L         
Sbjct: 19  RFGGVHFDSREIAKGELFIPVKG-RRDGHLFINDAFSRGAAGTLTERRVEL-------PP 70

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               +VV +T +     A     K    ++ VTG+ GK++    + ++  R         
Sbjct: 71  GKFQVVVRDTLEAFERLARWKREKFKGTVIGVTGSVGKTTTKELLGKLLGR--NCYTSKK 128

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +            S  +L + L               +S G        +K     
Sbjct: 129 SFNNLLGVCYTLSNLPESARFLVQEL-------------GTNSPGEIARLTKTVKPHVAV 175

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G+ H    +T +A    K+ + E       P           E+ +      C  L
Sbjct: 176 VTTVGKAHTQGFKTLEAIKKEKLSITEGAEVAVVPV----------ELKEMCRADKC--L 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +VG +G  + +K       +   T+    ++      +PG   V  A VAA + + +GI 
Sbjct: 224 TVG-RGGTVEVKNWGIKGGRTLFTLKAGKEELQLESSIPGYSIVNAAAVAAAVALELGIP 282

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +++ + +      R   V     G  I   Y     S+E  ++ + +    ++ V+ 
Sbjct: 283 LRELVKVVREFSPPKHRCS-VERLPNGTLIDDCYNANPVSMENAVRVLASFNGPKVAVLG 341

Query: 389 GCGGDRDQGKRP 400
                 ++G + 
Sbjct: 342 EMLELGEEGPKE 353


>gi|94970655|ref|YP_592703.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|166222948|sp|Q1IKH1|MURC_ACIBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94552705|gb|ABF42629.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/435 (18%), Positives = 144/435 (33%), Gaps = 59/435 (13%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            +GH      +  GAE +V SSA   ++          I V+    + L+      YG  
Sbjct: 54  FEGHR--ASNVE-GAEVVVTSSAIDSRNPEVAEAHANHIPVIQRA-EMLAELMRLKYG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ G  GK++  S V  +         ++ PT  +            S   L K+
Sbjct: 108 ----IAIAGMHGKTTTTSMVAAVLA-----GGELDPTVIVGG----RVDAMGSNARLGKS 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++    +  S               +  I    TN+ R+H+D +   +      +  
Sbjct: 155 HYLVAEADESDRSFL------------KLWFIHAVVTNIDREHMDTYHDMEDVERTFVE- 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---- 289
           F + +P     +   D+   + ++ R      R+++ G       L +     ++Q    
Sbjct: 202 FMDRVPFYGMVVACNDNEPLRAILPRVRR---RIVTYGTTEGSDFLIRCVPCDSEQLLLG 258

Query: 290 ---QVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              + ++   GK   +FL  +PG   V NA  A  + + + I +  +   L +   V  R
Sbjct: 259 FLNRFSVEYRGKSLGEFLLRVPGLHNVRNATAAIAIGVGLDIPADKIRAALAEFRGVDRR 318

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           F+  G  +    +  DY H    +   L   +      I VVF                 
Sbjct: 319 FQLKG-KANDISVIDDYGHHPTEIRATLAAAKQCGFRHIHVVFQPHRYTRTRDLMDEFAS 377

Query: 406 ALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIE---------- 454
           +   AD   + D  P SE P E +  E +       E   R  A   A            
Sbjct: 378 SFGDADSLYLLDIYPASEQPIEGVNTEALA--RRITEVSGR--ATFYAKSFQVAAIMAAT 433

Query: 455 MLNKQDVLVVAGKGH 469
                D+++  G G+
Sbjct: 434 AAEPGDMILTLGAGN 448


>gi|213423828|ref|ZP_03356808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 141

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/141 (44%), Positives = 85/141 (60%), Gaps = 4/141 (2%)

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDD
Sbjct: 1   MVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDD 60

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+E+P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV
Sbjct: 61  NPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 120

Query: 476 TNGEKKMSVDCDIIREILGLI 496
                  S D      +LG+I
Sbjct: 121 GTQRLDYS-DRVTAARLLGVI 140


>gi|329122143|ref|ZP_08250751.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
 gi|327466950|gb|EGF12466.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
          Length = 463

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 141/425 (33%), Gaps = 47/425 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   PQ I   A+ ++VS+A S  +          I V   +     L A+ L G    
Sbjct: 57  GHN--PQNIKN-ADVLIVSTAISKNNSEVLEAKKHKIPVFHRS----DLLAAILCG---G 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + V G  GKS+ ++ + ++         +  PT  +                     +
Sbjct: 107 KSICVAGAHGKSTTSAMIGKVF-----CDAEKHPTVVLGGKVDYLNG------------N 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G   ++    S G                TN+  DH+D++ T +   NA ++   
Sbjct: 150 SIFGNGEFVIAEADESDGSFLK----FNPFISVITNIEDDHLDHYLTVENIKNAFIKFIN 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +        I+  D+   K ++ +               ++  + K              
Sbjct: 206 QTDKINGNTILCIDNEGVKSILPKLDENSYITYGTSDNAEYKAINKRYIDSYMMFDVYHK 265

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E         +PG   V NAL A    +  GID   +++ L + + V  RF+   +    
Sbjct: 266 ESFLGTVSLMIPGTHNVRNALAALVTGLICGIDFKTIVKSLMEFNGVKRRFQIKYSGE-- 323

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I  DYAH    +   LK  +     R+I  F                 A D ADI  +
Sbjct: 324 VKIVDDYAHHPTEIMSTLKAAKECGKHRVICAFQPHRYSRTNLLKYEFANAFDNADIIFI 383

Query: 416 TDDNPRSEDP-EKIRAEII----------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           TD     E P   I  +++            I       +  EAI+     + K D+++ 
Sbjct: 384 TDIYSAGEKPINGISGKMLVDLIKEKHPTKTITYIKNMEDLPEAIK---NEMQKDDMIIT 440

Query: 465 AGKGH 469
            G G+
Sbjct: 441 MGAGN 445


>gi|254373068|ref|ZP_04988557.1| cyanophycin synthetase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570795|gb|EDN36449.1| cyanophycin synthetase [Francisella novicida GA99-3549]
          Length = 940

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +GR I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGRKICVLASPGDRRDEDIAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISADNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|148657887|ref|YP_001278092.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus sp. RS-1]
 gi|189029029|sp|A5UZT9|MURC_ROSS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148569997|gb|ABQ92142.1| UDP-N-acetylmuramate--L-alanine ligase [Roseiflexus sp. RS-1]
          Length = 468

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 90/438 (20%), Positives = 146/438 (33%), Gaps = 56/438 (12%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYG 111
            DGH   P  IA GA+A+V +SA        SA      P+L   +              
Sbjct: 49  HDGHD--PAWIA-GADALVATSAVRDDHVELSAARARGIPVLRRADL---------WREW 96

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++AV GT GK++  + +  +  ++G +   +    T        R   P+   + 
Sbjct: 97  SQQRRVVAVAGTHGKTTTTALIALMLTQAGGNPGFLIGGET-PDLGIHARWGDPAAPLVV 155

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  +                      +       TN+  DH+D + +   Y  A  
Sbjct: 156 EADEYDRTFLA-------------------LTPDVAVMTNVEWDHVDIYPSPDNYEAA-F 195

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-------------CRVLSVGYQGKFIH 278
           RLF   + +    I+  DD  +  V                     CR+  + +    + 
Sbjct: 196 RLFTRRVAQPQRLIVCGDDPGALRVANHPDAQQYGIEEAIARNPASCRLAPMDWMAANVR 255

Query: 279 LKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                   +  +      G   D  +   L G+  V NAL A  +   +G++   + + L
Sbjct: 256 YDGAMTNFDLWRYDRRTFGARLDGTYTMRLVGDHNVRNALAAIAVATLLGVERDAIADAL 315

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                   RF+  G  + G  I  DYAH        L   R     R +VV+       +
Sbjct: 316 AAYRGARRRFDIKG-EANGITIIDDYAHHPTEARATLAAARARFPQRRLVVYLQPHTFSR 374

Query: 397 GKR-PIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIP--GFIEKGNRIEAIRT 451
            +        A D AD+  + D  P  E  DP  +   +   I        GN +EA  T
Sbjct: 375 TQALRDAWADAFDHADVVRIGDVYPARETGDPRTVAHALAGCIRHNDVQAVGNVVEAAAT 434

Query: 452 AIEMLNKQDVLVVAGKGH 469
              +L   DVL+  G G 
Sbjct: 435 IGGLLRPGDVLLTLGAGD 452


>gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate
           [Corynebacterium glutamicum]
          Length = 293

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 30/261 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ---------- 80
           + V  DSR +  G +F+A+ G + DGH F   AI +GA A++ +    +           
Sbjct: 29  SSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREVDVPAIVVPPVKIQ 88

Query: 81  ----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
               D  A         VV+   +            H  N++A+TG++GK+S   F+  +
Sbjct: 89  ESNADIYAHEPDGHGAAVVEALSRLARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATV 148

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             + G +    G  +         R            ++ +S++G+ H           +
Sbjct: 149 LGQDGPTVAPPGSFNNELGLPHTVRC----TTDTKYLVAEMSARGIGH----------IK 194

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSK 254
           H  +       +  N+G  H+    +++    AK  + E L  K     A++ ADD +  
Sbjct: 195 HLTEIRPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPFVA 254

Query: 255 EVMKRAHNAGCRVLSVGYQGK 275
            +  R         +   Q K
Sbjct: 255 RMAPRTKARVVWFTTDAGQAK 275


>gi|146276746|ref|YP_001166905.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|166224720|sp|A4WQD6|MURC_RHOS5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145554987|gb|ABP69600.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 470

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 140/416 (33%), Gaps = 49/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V+SSA    +          + VV        L   R       + +A+ GT GK+
Sbjct: 71  AGVVVISSAIKKGNPELEEARRRGLPVVRRAEMLAELMRLR-------SNIAIAGTHGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  +  + G     I     I ++  + R      +                  V
Sbjct: 124 TTTTMVATLLDKGGFDPTVING-GVIHAYGSNARAGAGEWM-----------------VV 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA       +RL          TN+  +H+++  +  A        F   +P    A+  
Sbjct: 166 EADESDGSFNRLPAT---IAIVTNIDPEHMEHWGSFDALRKG-FYDFVTNIPFYGLAVCC 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK-----DFD 301
            D    + ++ R  +   R+++ G+     +    +   +      ++++G+        
Sbjct: 222 TDHPEVQALVGRVTDR--RIVTFGFNAQADVRAINLRYENGTAHFDVALQGEGEGHLIEG 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I  D
Sbjct: 280 MTLPMPGDHNVSNALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVGEVG-GVTIIDD 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H    +  +L+  R    GR+I V                    + AD+  + +    
Sbjct: 339 YGHHPVEIAAVLRAARQAVKGRVIAVHQPHRYSRLHTLFDDFCTCFNEADVVAIAEVYAA 398

Query: 422 SEDP--EKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
            E P     R +++ G+     +  R  AI       R   E     D++V  G G
Sbjct: 399 GETPIAGASRDDLVAGLIAHGHRHAR--AILCEDDLERLVREQARPGDMVVCLGAG 452


>gi|317473718|ref|ZP_07933005.1| UDP-N-acetylmuramate-alanine ligase [Anaerostipes sp. 3_2_56FAA]
 gi|316898839|gb|EFV20866.1| UDP-N-acetylmuramate-alanine ligase [Anaerostipes sp. 3_2_56FAA]
          Length = 460

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 136/414 (32%), Gaps = 48/414 (11%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V ++A     +++ A ++   P        K  +L    ++    +N +AV+GT GK++
Sbjct: 73  VVYTAAIHPENEEYKAALQKGIP------LMKRATLLGQMMHNY--KNAVAVSGTHGKTT 124

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  I   +G +   I     I      N     S +++ +A  Y +S         
Sbjct: 125 TTSMLSHIL-LAGETDPTI-TVGGILDIIDGNIRVGHSNVFVTEACEYTNSFLEFF---- 178

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                 N+  DH+D+        ++  + F   LP++   ++  
Sbjct: 179 ---------------PKISIILNIEEDHMDFFHDINEIRDS-FKKFAHKLPEDGLLVLNG 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKDFD-FLF 304
           +      +++       + ++ G              ++        +  EG   D    
Sbjct: 223 EIDDISYIVE---GLKAKYVTYGIDNDEFTYTAKNISYDSMGHGHFDLYKEGTFVDSLSL 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   + NAL AA +   +G+    V   L        RFE+ GT   G  +  DYAH
Sbjct: 280 NVNGLHNINNALSAAAVADFLGLSIDTVKAGLLTFSGAKRRFEYKGTCG-GFTVIDDYAH 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               ++  L   +      +  VF                 AL   D  I+TD     E 
Sbjct: 339 HPTEIKATLNACKNYPHKELWCVFQPHTYTRTNAFLDEFAEALSQCDHVIITDIYAAREK 398

Query: 425 ------PEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHET 471
                    +  +I           +  +AI   I +   K D+L+  G G+  
Sbjct: 399 DTGMVHARDLADKIEKTGTDVRYIKD-FDAIEEFILKKCKKNDLLITMGAGNVD 451


>gi|303239793|ref|ZP_07326317.1| UDP-N-acetylmuramate/alanine ligase [Acetivibrio cellulolyticus
           CD2]
 gi|302592730|gb|EFL62454.1| UDP-N-acetylmuramate/alanine ligase [Acetivibrio cellulolyticus
           CD2]
          Length = 469

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 135/405 (33%), Gaps = 39/405 (9%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQ 134
            L  ++A ++ N   LV        ++  + L G+  +     LA++GT GK++  S V 
Sbjct: 73  DLVVYTAAVKENNSELVKARQLGITTIERAVLLGQIMKKYPFSLAISGTHGKTTTTSMVS 132

Query: 135 QIC--QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            I        +    G    I      N     +  ++ +A  Y+ S    +        
Sbjct: 133 MIMLESNLDPTIHIGGELDAIGG----NTRIGGNKYFITEACEYVESFLKFY-------- 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                             N+  DH+DY +       A ++ F  L+PK+   I  ADD  
Sbjct: 181 -----------PTLAIVLNIEEDHLDYFKDINHIKQAFLK-FMNLVPKDGYIIACADDEN 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEF 310
              ++ +  +       +         + +            I    K       +PG  
Sbjct: 229 VSSILSQI-STNVVTYGINSTNATWTARNIEFDDSGCASYDLIKSGQKVAAIKLRVPGIH 287

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N++ AA  C  +G D   +   LE       RFE  G      ++  DYAH  + ++
Sbjct: 288 NVSNSIAAAAACYTLGCDIKDIEHGLEAFTGTHRRFEVKGVVEN-IKVVDDYAHHPSEIK 346

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIR 429
             LK  ++    +I  VF                 A   AD  I++D     E D  +I 
Sbjct: 347 ATLKAAKSTNHTKIWCVFQPHTYTRTKLLLDEFSEAFSDADEVIISDIYSAREIDTGEIH 406

Query: 430 AEII-----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + ++           I K +    +    E  +  D+++  G G 
Sbjct: 407 SNVLSQRINAKSNNSIYKPDFNAIVEYLKENASSGDLVITMGAGD 451


>gi|306836487|ref|ZP_07469460.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
 gi|304567650|gb|EFM43242.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
          Length = 487

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 93/427 (21%), Positives = 154/427 (36%), Gaps = 60/427 (14%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +V S A   Q     + +   N P++   +    L          H + +LA  GT GK+
Sbjct: 76  VVTSFAAIPQGNPELVAARENNIPLIRRSDLLAAL-------MEGHTQVLLA--GTHGKT 126

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S  S      Q +G   SF IG     +                        + G T  +
Sbjct: 127 STTSMAVSAMQHAGLDPSFAIGGQLNRAGTN---------------------AHGGTGEA 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
             A +   D   L          TN   DH+DY  +  AYF       + + P     ++
Sbjct: 166 FVAEADESDASLLRY-SPDIAVITNAEPDHLDYFHSADAYFKVFADFADLVTPDTGYLVV 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----------HLKKVCAIHNKQQVTISVE 296
            A+D ++ E+ ++A + G  V+  G   K              ++  A      V +S+ 
Sbjct: 225 CAEDEHAAEIGEQALSRGINVIGYGGAEKARTTSVPLAATLTAEETTAAGMACTVQLSLP 284

Query: 297 G--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNS 353
           G  +   +   +PG   V N++ A    +  G + + + E L     V  RFE+ G  + 
Sbjct: 285 GVEESVSYQLQIPGHHMVLNSMAALIAGVLSGGEPSTIAEGLADFSGVRRRFEYRGSVDW 344

Query: 354 RGG--RIYVDYAHTSNS-----LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +GG  R++ DYAH              K       GR+I  F         +       A
Sbjct: 345 QGGSVRVFDDYAHHPTEVAAVLRAARAKVAAEGNGGRVIACFQPHLYSRTMEFDAEFAQA 404

Query: 407 LDLADIAIVTDDNPRSEDP-EKIRAEII-HGIPGFIE---KGNRIEAIRTAIEMLNKQDV 461
           L LAD  +V D     E P E I + II + +P  +E   + +   A +  + +    D+
Sbjct: 405 LALADAVVVLDIYGAREQPVEGITSRIITNKMPEEMEVIFEPDFSAAAKDVVSIAQPGDI 464

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 465 ILTIGAG 471


>gi|171057209|ref|YP_001789558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
 gi|170774654|gb|ACB32793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
          Length = 489

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 144/387 (37%), Gaps = 26/387 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + I  V SD+R ++AG +FVA+ G + D H F+PQA          + A +         
Sbjct: 29  QPIARVHSDTRSLRAGDLFVALRGERFDAHDFLPQAQ--------AAGAVAAIAERGLDA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           S  P + V ++   L   A+    +H   ++AVTG++GK++V   +  I +        +
Sbjct: 81  SGMPGIEVPDSLLALQALAAGWRAEHLLPVIAVTGSNGKTTVTQMIAAILR------AWL 134

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +  ++   +N +  P        L+  +      V +  +  G         +    
Sbjct: 135 GDAAHATAGNFNNHIGVPLT-----LLALHAGHRAAVVELGMNHPGEIAELARIAQPTVA 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++ QT +A       +   L P +  A+  ADD Y+    + A       
Sbjct: 190 LVNNAQREHQEFMQTVEAVARENGCVISAL-PADGVAVFPADDDYTPIWRELAQPRRVLT 248

Query: 268 LSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            ++   G     + +     +  Q          D    + G   V NAL A    +A G
Sbjct: 249 FALAEAGVAADCVAQASWAGDHWQARFDTPAGSIDLALGVAGRHNVKNALAACACALAAG 308

Query: 327 IDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
                V   L     V GR +   +    R   +  D Y    +S+   ++ +  + + R
Sbjct: 309 CPLDAVQRGLAGFAAVKGRSQVSLLDWGGRQVTLVDDSYNANPDSVRAAIEVLAALPAPR 368

Query: 384 IIVVFGCGGDRDQGK--RPIMGKIALD 408
            +++   G   DQG      +G +A  
Sbjct: 369 WLLLGDMGEVGDQGPAFHAEVGTLAAQ 395


>gi|225463627|ref|XP_002271742.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 771

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 151/450 (33%), Gaps = 38/450 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFI-PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           + +D+R ++ G  F AI G   D H FI P+   +G   ++ +      D          
Sbjct: 335 ICTDTRTLEPGQWFFAIRGENFDAHEFITPELGHKGCVGVIGNWVCPNWDKGFVEMGG-- 392

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                 T   L   A+    K    ++ VTG++GK++  + +    +  GL     G  +
Sbjct: 393 -----ETLTSLEKMANYARNKFHGCLVGVTGSAGKTTTRTMIALTLESLGLVHQTHGNEN 447

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                         +  ++   L                  G         +       N
Sbjct: 448 NRIGVCLSLIGIPQNVGFVVLEL-------------GMDRRGEIMELARKARPSIRVILN 494

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++   + +    AK  +  E  P +   ++ ADD     +    H     +    
Sbjct: 495 VGCAHLENFASLEEVAMAKGEILAEAKPGD-VCVLNADDPLVMSL-PVPHGVKKVLFGQR 552

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +       +     +  +V +    +  +F+ P PG     NA   A + +A+G+    
Sbjct: 553 LECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACATAAVAVALGVSLPQ 612

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFG 389
           V   L +   V  R E     + G +I  D Y     S +  ++ ++ I   G+ + + G
Sbjct: 613 VGISLSRFIPVSMRSELEVAKT-GIKIINDVYNANPVSTKAAIELLKNIDCKGKRVAILG 671

Query: 390 CGGDRDQGKRPIMGKIALDLAD-----IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
              +  Q +      +     D     IA+V     R+ +   +  E        +   +
Sbjct: 672 DMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFLRAAENLNLVGE-----RNLLYSPD 726

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                   ++ LN+ DV++V  KG   + +
Sbjct: 727 AESLAFEIVQRLNRNDVILV--KGSRGMQM 754


>gi|227824969|ref|ZP_03989801.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
 gi|226905468|gb|EEH91386.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
          Length = 463

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 97/425 (22%), Positives = 153/425 (36%), Gaps = 51/425 (12%)

Query: 59  FIPQA---IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           FI  A   I + AE IVVS+A      +     +   P++   +   +L         KH
Sbjct: 56  FIGHAACQIER-AEVIVVSTAIHPDNPELVEAHKRGVPVIHRSDVLAYL-------MNKH 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV G  GK++ +S +  I               T  +      +       L   
Sbjct: 108 --KGIAVAGAHGKTTTSSMLSLI---------------TCDNGIDPTVVVGGVVNNLGTN 150

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                S  V   + E+    L        +      TN+  DH+D++ T++    A  + 
Sbjct: 151 SVNGKSDYVVAEADESDGSFLK------FRPYLAVITNIENDHLDHYGTEEKIQEA-FQQ 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQV 291
           F + + ++  AI+  D+   + V          V+S G   K      + +    +    
Sbjct: 204 FVDQVKEQGKAILCYDNEKVRRV---GEKTATEVISYGIDAKDADYRAENIEYGKDGTHY 260

Query: 292 TISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            I   GK        +PG   V NAL A      +G+    +   LEK      RFE  G
Sbjct: 261 DILFRGKKIGKGHLIVPGRHNVLNALGALAAARELGLSVEEISRSLEKFTGAKRRFETKG 320

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              RG  +  DYAH    +++ LK  R     R+IVVF                +A   A
Sbjct: 321 -RVRGIWVVDDYAHHPTEIKVTLKAARQTQPKRLIVVFQPHRYTRTQLLLDEFAVAFKEA 379

Query: 411 DIAIVTDDNPRSEDP-----EKIRAEIIHGIPG-FIEKGNRIEAIR-TAIEMLNKQDVLV 463
           D  IVTD    SEDP      K+ AE I    G  +   +  E+I+   ++     D+++
Sbjct: 380 DELIVTDIYAASEDPIPGISGKMLAETIQRTTGQDVSYMSGFESIKNYLVDHAAAGDLVM 439

Query: 464 VAGKG 468
             G G
Sbjct: 440 TIGAG 444


>gi|126726622|ref|ZP_01742462.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703951|gb|EBA03044.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
          Length = 463

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 146/418 (34%), Gaps = 39/418 (9%)

Query: 67  GAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           GA+  V   A +L D      S+ I+   P L     R    +  + +  +     + +A
Sbjct: 56  GAKIFVGQKAENLTDAEVVVISSAIKPGNPELDTARARGLPVVRRAEMLAELMRLKSNIA 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           + GT GK++  + V ++    G+    I     I ++  + R+     +           
Sbjct: 116 IAGTHGKTTTTTLVAELLVGGGMDPTVING-GIIHAYGSNARMGQGEWM----------- 163

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  VEA       +RL          TN+  +H+++  +  A        F   +P
Sbjct: 164 ------VVEADESDGTFNRLPAT---IAVVTNIDPEHMEHWGSFDALRQG-FADFVGNIP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGK 298
               A+   D    + ++ R  +       V  Q     L            + +  EG+
Sbjct: 214 FYGLAVCCTDHPEVQALVGRIRDRRITTFGVNAQADVRALNLRYENGRALFDIQLKAEGQ 273

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D   P+PGE  V NAL A  +   +G+  A +   LE    V  RF  VG    G  
Sbjct: 274 MIEDCSLPMPGEHNVTNALAAVAVARHLGMKKAEIRTALENFGGVNRRFTRVGEVG-GAI 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +  DYAH    +   L+  R  T+GR+I V                    + AD+  ++D
Sbjct: 333 VIDDYAHHPVEIAAALRAARQSTTGRVIAVHQPHRFSRLHDLFDDFCACFNDADVVAISD 392

Query: 418 DNPRSEDP--EKIRAEIIHGIPGFIEKG----NRIEAIRTAIE-MLNKQDVLVVAGKG 468
                E P     R +++ G+     +        EA+   I+      D+++  G G
Sbjct: 393 VYAAGEAPIEGANRDDLVAGLVAHGHRHALALQNEEALLDLIKTEAKPGDMVICLGAG 450


>gi|163741570|ref|ZP_02148961.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
 gi|161385304|gb|EDQ09682.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
          Length = 465

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 145/426 (34%), Gaps = 45/426 (10%)

Query: 56  GHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
             +F+ QA      A  +V+SSA    +          + VV        L         
Sbjct: 57  ARIFVGQAAENLEDAAVVVISSAIKPGNPELDEARLRGLPVVRRAEMLAELMRL------ 110

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++ +A+ GT GK++  + + +    +G     I     I ++  + R+     +     
Sbjct: 111 -KSNIAIAGTHGKTTTTTMMAE-LMVAGHFDPTIVNGGIIHAYGSNARMGQGEWM----- 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        VEA       +RL          TN+  +H+++        +     
Sbjct: 164 ------------VVEADESDGTFNRLPAT---IAVVTNIDPEHMEHWGDFDTLRDG-FYD 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
           F   +P    A+   D    + ++ R  +   RV++ G+     +    +          
Sbjct: 208 FVSNIPFYGVAVCCTDHPEVQALVGRITDR--RVVTYGFNAQADVRATNLTYKAGVAHFD 265

Query: 293 ISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           I ++ +D        P+PG+  V NAL A  +   +G+ S+ + E L     V  RF  V
Sbjct: 266 IHLQAEDRVIEGCTLPMPGDHNVSNALSAVAVARHLGMKSSEIREALAAFGGVNRRFTKV 325

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G    G  I  DY H    +  +LK  R    GR+I V                    + 
Sbjct: 326 G-EVDGVTIIDDYGHHPVEITAVLKAARQACDGRVIAVHQPHRYSRLSSLFEDFCACFNE 384

Query: 410 ADIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVL 462
           AD+  + +     EDP     R +++ G+     +  R      +  R   E     D++
Sbjct: 385 ADVVAIAEVFAAGEDPIEGAGRDDLVAGLIRHGHRHARALLDESDLERLVREQARPGDMV 444

Query: 463 VVAGKG 468
           V  G G
Sbjct: 445 VCLGAG 450


>gi|298369634|ref|ZP_06980951.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282191|gb|EFI23679.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 469

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 140/425 (32%), Gaps = 55/425 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +      +   I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAANEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D A+ + ++ +         + G      I+   +  I  + + T+ V     E K
Sbjct: 215 FLCVDSAHVRAILPKVSKPYA---TYGLDDTADIYATDIENIGAQMKFTVHVNMKGHERK 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F  +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 TFGVVLNMPGRHNVLNALAAIGVALEVGAPVEAIQQGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D+ 
Sbjct: 332 TALVVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKILNTVDLL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCESVSELPAMLLNVLQDGDMVLN 449

Query: 465 AGKGH 469
            G G+
Sbjct: 450 MGAGN 454


>gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 495

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 148/427 (34%), Gaps = 56/427 (13%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    +  +  VS+D+R ++ G +FVA+ G+  DGH ++ +A  +GA A +VS       
Sbjct: 25  PALPDDTPLAGVSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARAALVSRP----- 79

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQ 138
               + ++ P+L+V +TR  L   A  +  K     + ++ +TGT+GK++    +  +  
Sbjct: 80  ----VEASGPLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLS 135

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQH 197
           R G                  NR    + I + + L       G   + V     G  ++
Sbjct: 136 REGRR-------------PHTNRQNWNNEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMEY 182

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               +       T++G  H++   + +  +  K  L   + P      +  D  +     
Sbjct: 183 LSSVLVSDVSIVTSVGEGHLETLGSIEGVWKEKSNLLNWVRPGGGIV-LPLDLLFRYPAS 241

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----------------VEGKDFD 301
                   R   V          +      +    +S                   + F 
Sbjct: 242 PVFRERQRRFFFVALDPDPGDSARASRSVPEGSTILSGTLRKEEGGTWILSGTTGPESFS 301

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P P      +AL+A     A+G+  +   +HLEK   +PGR +   T      +   
Sbjct: 302 WSMPSPSSILAMDALLALAAGNALGVSLSEGAKHLEKFAPLPGRMQEKRTPEGALLLLDH 361

Query: 362 YAHTSNSLEMILKNIRTIT----------SGRIIVVFGCGGDRDQGK---RPIMGKIALD 408
           Y     SL+   +    +            G+++ V G   +  +         G IA +
Sbjct: 362 YNSNPLSLQGAFQWCTEVWKKEASLAGGGPGKLLAVLGDMLELGEDSSRLHRKAGLIAAE 421

Query: 409 LADIAIV 415
               AI 
Sbjct: 422 TPFSAIF 428


>gi|329928513|ref|ZP_08282381.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
 gi|328937772|gb|EGG34180.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
          Length = 458

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/424 (19%), Positives = 146/424 (34%), Gaps = 46/424 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q   QGA+ +V S+A S  +          I V         + A  L  +   
Sbjct: 55  GHT-AEQV--QGADLVVYSTALSKDNVERVEAEKLNIPV----LHRAQMLARLLNER--- 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV G  GK++ +S +  + +  G     + PT  I     +      +         
Sbjct: 105 KGVAVAGAHGKTTTSSMIALVMEECG-----VDPTFIIGGEIMNVGTNAKAGEG------ 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + V   + E+    L  H         G   N+  DH++ ++       A    F 
Sbjct: 154 ----EHVVAEADESDGSFLQYH------PWLGVVLNIEADHLENYEGDFNRLKAAYVQFL 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTIS 294
             +  +  A++ ADD   + ++    +  C V + G      +    +         T+ 
Sbjct: 204 SQIKADGTAVVCADDNNIQAIL---PDLKCNVTTYGIHADAEYTATNLVLGDRHVSFTML 260

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G +       +PG+  VYNA+     C+  GI    ++E + K +    RF+ +G  +
Sbjct: 261 HNGMELGTVELSVPGKHNVYNAMATVICCLKSGISFEAIVEAIVKFNGAKRRFQVLG-EA 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  +  DYAH    +E  +   +  T  RII VF                 A   AD  
Sbjct: 320 EGILVIDDYAHHPTEIEATISAAKA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFGEADEV 378

Query: 414 IVTDDN-PRSEDP------EKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+TD   P  E         K+   I+     G      + + +      + + D+++  
Sbjct: 379 IITDIYSPAGEKQIEGISSGKLVELIVQNSNAGARYLPTKEDVLNDLKGRVKEGDLVLTM 438

Query: 466 GKGH 469
           G G 
Sbjct: 439 GAGD 442


>gi|331087235|ref|ZP_08336305.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408921|gb|EGG88382.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 459

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 147/415 (35%), Gaps = 50/415 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           ++    +  ++A + ++ P  +     +   L  + L G+   N    +AV+GT GK++ 
Sbjct: 66  ITDDIDVVVYTAAVHADNPEFIAAKEHQLPMLTRAELLGQLMTNYKTPIAVSGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I   +G +   I     +     + R+     +++ +A  Y +S          
Sbjct: 126 TSMISHIL-LAGDTDPTISVGGILKIIGGNIRVGHSD-VFITEACEYTNSF--------- 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                    LD +    G   N+  DH+D+ +      ++  R F  LLPK+   II ++
Sbjct: 175 ---------LDFL-PKIGIILNVEEDHMDFFKDLDDIRHSFHR-FAALLPKDGTLIINSE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---KDFDFLFPL 306
            +  ++++       C V++ G      +  +     N   V+  +     K       +
Sbjct: 224 ISQYEQIIA---GLNCNVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE  V NAL A      +GID   + + L        RFE+ GT   G  I  DYAH  
Sbjct: 281 NGEHNVSNALSAIITGTLLGIDLEKIKKGLLSFTGTDRRFEYKGT-LDGVTIIDDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
             +E  L   +      I  +F                 AL LAD  I+ D     E   
Sbjct: 340 TEIEATLSAAQHYPHREIWCIFQPHTYTRTKAFFHEFAQALTLADHVILADIYAARETDT 399

Query: 426 -----EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E +   I            F E  N ++     I      D+L+  G G 
Sbjct: 400 LGMSSEALSDAIRELGGDSYYFSSFDEIKNFVK--EKCIH----GDMLITMGAGD 448


>gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
 gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
          Length = 822

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 146/386 (37%), Gaps = 29/386 (7%)

Query: 28  RKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++  + +DSR +      +F A+   + DGH +IP+   +G  + VVS          T
Sbjct: 22  VEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRLPE----DMT 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +   L V +  K L   A R        ++ +TG++GK+ V  ++ Q+         
Sbjct: 78  SCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQLLS------- 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
              P   ++   +        P+ +   L+  S  G+    +  S  G  +     I+  
Sbjct: 131 ---PERRVTRSPRSYNSQIGVPLSVWN-LNEKSEVGLFEAGI--SEPGEMEALQSVIQPT 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKR-AHNA 263
            G FT LG  H +   + +     K++LF     K++  ++Y  DDA     + R A   
Sbjct: 185 IGVFTCLGDAHQENFTSYEQKCMEKLKLF-----KDAKVLVYDMDDACVAGCVNRSAFKG 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                S   +   +++  V     +  V+   +GK+     P   E  + N++    +C+
Sbjct: 240 EYFAWSRQQRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVSCLAVCL 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI--RTITS 381
            +G+    +   +  L  V  R E     S    I   Y    NSL++ L  +  R   +
Sbjct: 300 HLGMSPETIAARMAVLEPVAMRLEVKEGRSGCTLINDSYNSDYNSLDIALDFMNRRPDCA 359

Query: 382 GRII-VVFGCGGDRDQGKRPIMGKIA 406
           GR   +V             + G++A
Sbjct: 360 GRKRTLVLSDIEQAGGAPEDLYGRVA 385


>gi|304386680|ref|ZP_07368961.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
 gi|304339233|gb|EFM05312.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
          Length = 469

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D+ 
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDVL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
 gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
          Length = 445

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 164/418 (39%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ +DD + + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLCDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      KIR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGIDAP------KIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|297250431|ref|ZP_06934038.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
 gi|296838889|gb|EFH22827.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
          Length = 469

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 139/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E +
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQE 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPDKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I         +  + +L   DV++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|331268329|ref|YP_004394821.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
 gi|329124879|gb|AEB74824.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
          Length = 458

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 158/422 (37%), Gaps = 43/422 (10%)

Query: 64  IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           I +GAE  +  +  +++D     ++A I  + P LV  +  +  ++  +   G   +   
Sbjct: 52  IEKGAEIYIGHNKDNIKDVDLVVYTAAIPDSNPELVRAHELQIPTMDRAEFLGHVMQGHK 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A++GT GK++  S +  I   S      I     +     + R+   S  ++ +A  
Sbjct: 112 YNIAISGTHGKTTTTSMLSHI-TLSANLDPTILVGGNLDVINGNVRVG-NSDYFVTEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S    +                      G   N+  DH+D+++      N  ++ F 
Sbjct: 170 YKASFLKFY-------------------PYIGIILNIEADHLDFYKDINDIQNTFLK-FA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +L+PK+   I+ ADD      +  +    C V++ G     +  K +   + +    +  
Sbjct: 210 KLIPKDGFLIVNADDE---RCLAVSKEVDCNVMTFGINNGEVRAKNIEFNNGRPTFDVYR 266

Query: 296 EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                F     +PG   + ++L +    +++ +D+  ++E L   +    RFE  G    
Sbjct: 267 NDTKLFSLTLNVPGNHNILDSLASISASLSLNVDTDSIIEGLSTFYGAHRRFEIKG-ELN 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +  DYAH    ++  L   +     RII +F                 +   AD  I
Sbjct: 326 GITVVDDYAHHPTEIKAALNAAKNFPHNRIICIFQPHTYSRTISLFDDFADSFFNADTLI 385

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAI-RTAIEMLNKQDVLVVAGK 467
           + D     E    I +  + G     EKG      +  EAI     + L + D+L+  G 
Sbjct: 386 LADIYAAREKDTGIVSSDMLG-NKIREKGVNCKNLHSFEAITEFLRQELKEGDLLITVGA 444

Query: 468 GH 469
           G 
Sbjct: 445 GD 446


>gi|148556847|ref|YP_001264429.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
 gi|166224734|sp|A5VDC5|MURC_SPHWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148502037|gb|ABQ70291.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
          Length = 473

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 139/424 (32%), Gaps = 58/424 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A    +    +     + VV        L          ++ +A+ GT GK+
Sbjct: 68  AAVVVTSTAIKRGNPEVELALEKRVPVVRRAEMLAELMRL-------KSTVAIAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G+    I     I+S+  + RL     +                  V
Sbjct: 121 TTTSMVAALLDAGGVDPTVING-GIINSYGSNARLGASDWM-----------------VV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RLDG        TN+  +H+D++ +     +  +  F E +P    A++ 
Sbjct: 163 EADESDGSFLRLDGT---IAVVTNIDPEHLDHYGSFDKVKDCFVE-FVENVPFYGAALLC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------ 301
            D    + ++ R  +          Q   +    V  I    +  + V  +D D      
Sbjct: 219 IDHPEVQAIIPRVRDRKVVTYGFSAQAD-VRGDNVTPIPGGNRFDVVVRNRDGDTRRIEG 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRI 358
              P+PG   V NAL A G+ + + I  A++     K   V  RF  VG    G     +
Sbjct: 278 VTLPMPGRHNVQNALAAIGVALEMNISDAIIATGFAKFGGVKRRFTKVGEVPVGDGVATV 337

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    +  +L   R     ++I V                + A + AD   V   
Sbjct: 338 IDDYGHHPVEIRAVLAAAREGARAKVIAVVQPHRFTRLRDLMTEFQTAFNDADTVYVAPV 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-------------QDVLVVA 465
               E P     +    + G  ++G+R   +     +                 D+++  
Sbjct: 398 YAAGEAPIDGV-DAAALVAGLKQRGHRSAQV-----IAGPEALAATLAATIAADDMVICL 451

Query: 466 GKGH 469
           G G 
Sbjct: 452 GAGD 455


>gi|254671177|emb|CBA08291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha153]
          Length = 452

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 145/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR IQ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSENKSVSRIVTDSRDIQEGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L + A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLTALQMVAKAWRENVDPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSGGKTTVKEMLASVLRR---RFGDNAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R H+            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA          N   R  + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGMALIPQEDANMAVFKTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  A  L +A G+    V E L+    + GR   V    +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAVALSLAAGLSLNDVAEGLKGFSNIKGRLN-VKAGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|310814884|ref|YP_003962848.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
 gi|308753619|gb|ADO41548.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
          Length = 470

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 148/417 (35%), Gaps = 53/417 (12%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+SSA      +  A      P++   +    L            ++ ++V GT 
Sbjct: 76  GAGVLVISSAIKAGNPELDAARARGIPVVRRADMLAELMRL---------KSNVSVAGTH 126

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +    G+    +     I ++  + R+     +                
Sbjct: 127 GKTTTTTMVATLLDAGGIDPTVVNG-GIIHAYGSNARVGQGEWM---------------- 169

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VEA        RL          TN+  +H+++  T +A        F   +P    A
Sbjct: 170 -VVEADESDGTFIRLPTT---IAIVTNIDPEHMEHWGTIEALRKG-FTDFVTQIPFYGLA 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFD 301
           ++  D    + +  R  +   RV++ G+  +   ++ V   + K Q    +   +G    
Sbjct: 225 VLCTDHPEVRALAARVTDR--RVVTFGF-NEDADIRAVNLTYEKGQAHFDIALPDGVIAG 281

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG+  V NAL A  +   +G+D   +   L     V  RF  V     G  I  D
Sbjct: 282 CTLPMPGDHNVSNALAAVAVARHLGMDHDAISAALAGFAGVGRRFTKV-AEVDGITIIDD 340

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H    +  +++  R  TSG+++ V                    DLAD   +TD    
Sbjct: 341 YGHHPVEIAAVMRAARQATSGKVVAVHQPHRYSRLAHLFDEFSACFDLADYVGITDVYAA 400

Query: 422 SED--PEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ED  P   R +++ GI             + +  + +R  +      D+LV  G G
Sbjct: 401 GEDPIPGASRDDLVAGITAHGHPHAFAVTSEADLADVVRKYMA---PGDMLVCLGAG 454


>gi|237799292|ref|ZP_04587753.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022148|gb|EGI02205.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 486

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 140/419 (33%), Gaps = 50/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG     +        +          ++       + +
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 181 ---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   +E++          L+ G+ +   I    V         T+    ++  D  
Sbjct: 226 MCIDDPVVREILPMVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             +PG   V N+L    +    G+    +++ L     V  RF+    +  +     +  
Sbjct: 283 VNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +  ++  +R      R+++V+                  L  A++ ++ +  
Sbjct: 343 DYGHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKGH 469
           P  E+P  I       +   I +  +++   I   +E+           D+L+  G G 
Sbjct: 403 PAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQGAGD 459


>gi|56696089|ref|YP_166443.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria pomeroyi DSS-3]
 gi|81350286|sp|Q5LU62|MURC_SILPO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56677826|gb|AAV94492.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria pomeroyi DSS-3]
          Length = 465

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 140/414 (33%), Gaps = 45/414 (10%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+SSA      +         P++   +    L            ++ +A+ GT 
Sbjct: 70  GAAVVVISSAIKPGNPELDGARAQGLPVVRRADMLAELMRL---------KSNIAIAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + + ++    G     I     I +++ + R+     +                
Sbjct: 121 GKTTTTTMMAELMVAGGFDPTVING-GIIHAYSSNARMGQGEWM---------------- 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VEA       +RL          TN+  +H+++  + +A        F   +P    A
Sbjct: 164 -VVEADESDGSFNRLPAT---VAIVTNIDPEHMEHWGSIEALRQG-FYDFVSNIPFYGIA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
           +   D A  + ++ R  +   R      Q   +    +          I ++ +D     
Sbjct: 219 VCCTDHAEVQALVGRITDRRVRTYGFNAQAD-VRATNLTYKGGVAHFDILLQHEDMVIEG 277

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG+  V NAL A  +   +G+ +  +   L     V  RF  VG    G  I  D
Sbjct: 278 CTLPMPGDHNVSNALSAVAVARHLGMKADEIRAALAAFGGVNRRFTKVG-EVNGVTIIDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H    +  +LK  R  + GR+I V                    + AD+  + +    
Sbjct: 337 YGHHPVEIAAVLKAARQASEGRVIAVHQPHRYSRLSNLFDDFCACFNEADVVAIAEVYAA 396

Query: 422 SED--PEKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
            E   P   R  ++ G+     +  R     E +   + E     D++V  G G
Sbjct: 397 GEAPIPGADRDALVAGLIRHGHRHARAILSEEDLERLVREQTRPGDMVVCLGAG 450


>gi|71735898|ref|YP_276229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|109892721|sp|Q48EF9|MURC_PSE14 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71556451|gb|AAZ35662.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322449|gb|EFW78542.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330082|gb|EFW86069.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874984|gb|EGH09133.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 486

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 139/419 (33%), Gaps = 50/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG     +        +          ++       + +
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 181 ---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   +E++          L+ G+ +   I    V         T+    ++  D  
Sbjct: 226 MCIDDPVVREILPLVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             +PG   V N+L    +    G+    +++ L     V  RF+    +        +  
Sbjct: 283 VNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +  ++  +R      R+++V+                  L  A++ ++ +  
Sbjct: 343 DYGHHPREVSAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKGH 469
           P  E+P  I       +   I +  +++   I   +E+           D+L+  G G 
Sbjct: 403 PAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQGAGD 459


>gi|313891497|ref|ZP_07825110.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
 gi|313120074|gb|EFR43253.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
          Length = 463

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 141/425 (33%), Gaps = 47/425 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   PQ I   A+ ++VS+A S  +          I V   +     L A+ L G    
Sbjct: 57  GHN--PQNIKN-ADVLIVSTAISKNNSEVLEAKKHKIPVFHRS----DLLAAILCG---G 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + V G  GKS+ ++ + ++         +  PT  +                     +
Sbjct: 107 KSICVAGAHGKSTTSAMIGKVF-----CDAEKHPTVVLGGKVDYLNG------------N 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G   ++    S G                TN+  DH+D++ T +   NA ++   
Sbjct: 150 SIFGNGEFVIAEADESDGSFLK----FNPFISVITNIEDDHLDHYLTVENIKNAFIKFIN 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +        I+  D+   K ++ +               ++  + K     +        
Sbjct: 206 QTDKINGNTILCIDNEGVKSILPKLDKNSYITYGTSDNAEYKAINKRYIDSHMMFDVYHK 265

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E         +PG   V NAL A    +  GID   + + L + + V  RF+   +    
Sbjct: 266 ESFLGTVSLMIPGTHNVRNALAALVTGLICGIDFKTIAKSLMEFNGVKRRFQIKYSGE-- 323

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I  DYAH    +   LK  +     R+I  F                 A D ADI  +
Sbjct: 324 VKIVDDYAHHPTEIMSTLKAAKECGKHRVICAFQPHRYSRTNLLKYEFANAFDNADIIFI 383

Query: 416 TDDNPRSEDP-----EKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           TD     E P      K   ++I        I       +  EAI+     + K D+++ 
Sbjct: 384 TDIYSAGEKPVNGISGKTLVDLIKEKHPTKKITYIKNMEDLPEAIK---NEMQKDDMIIT 440

Query: 465 AGKGH 469
            G G+
Sbjct: 441 MGAGN 445


>gi|288919049|ref|ZP_06413390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
 gi|288349589|gb|EFC83825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
          Length = 510

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 24/442 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  V  DSR +  G +FVA+ G + DGH F              +         A    
Sbjct: 28  PVTSVVIDSRQVAPGSLFVALPGERVDGHDFAA-----------AAVGAGALAVLAARPV 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P ++V +    L+  A+ +  ++   ++ VTG++GK++    +  +    G +    G
Sbjct: 77  GVPAVIVTDPAVGLAALAATVRDRYTATVIGVTGSAGKTTTKDLLADLLGGHGEAGGPGG 136

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +T+++                  L          + + A   G         +   G 
Sbjct: 137 LGATVAA----IGSFNNEIGLPLTMLRAEPETRFVVLEMGARGIGHIATLCALARPQVGL 192

Query: 209 FTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCR 266
             N+G  H+  +   ++    AK  L E         ++ ADD     +  R    A   
Sbjct: 193 VLNVGSAHVGEYADGRRGIAVAKGELAEA---ASELVVLNADDPLVASMAARVQASAKVV 249

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +   G        +       +    +   G+       L G  QV NAL AA   I +G
Sbjct: 250 LFGTGASADVRAERIEVDAAGRAAFDLLASGECHRLRLGLVGAHQVANALAAAAAAIGLG 309

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRI 384
           +  A     LE+          V T   G  +  D Y     S+   L  +  I   GR 
Sbjct: 310 LAPADAAAALERARPRSRWRMEVTTTPGGVVVLNDAYNANPESMRAALAALLDIRGDGRA 369

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             V G  G+   G      ++   +A + +  +    P +    +   E +         
Sbjct: 370 WAVLGPMGELGAGAAEAHRELGRLVASLGVPRLVAVGPGALGVHEAAREDVAWAGESTWV 429

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
               EA+      +   DV++V
Sbjct: 430 SGVDEAVAFLGGQVRPGDVVLV 451


>gi|296131673|ref|YP_003638920.1| cyanophycin synthetase [Thermincola sp. JR]
 gi|296030251|gb|ADG81019.1| cyanophycin synthetase [Thermincola potens JR]
          Length = 890

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 127/358 (35%), Gaps = 31/358 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   +G     +G T++   +     +          A + L    V    +E + 
Sbjct: 497 LIAHILHAAGNV---VGMTTSDGIYVNGKLIAKGDMTGPVSARTVLRDNSVEVAVLETAR 553

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   +   G  TN+  DH+  D  +T +     K  +  E   ++   ++ AD
Sbjct: 554 GGIIRAGLGFDRCDVGIITNISEDHLGIDGIETLEDLAFVKS-VVAEATDRDGYVVLNAD 612

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEG---------K 298
           D  +  V  R                          A+  K    +  +G         K
Sbjct: 613 DRLASYVASRCRGNIIYFSRASDNITIRRHLGAGGMAVFVKNGFVVYAKGNHVVKIASVK 672

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL----EKLHVVPGRFEFVGTNSR 354
                        V N L A+  C+ +GI  A + E L      L   PGR  F      
Sbjct: 673 SIPCTLSGQALHNVENVLAASAGCLGLGIPVAQIKEGLLSFEPGLKGNPGRLNFFEVA-- 730

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G ++ VDY H     + +L   + +   R+I V G  GDR       +G+IA    D  I
Sbjct: 731 GVKVLVDYGHNPAGYQSVLATAKKMKHKRLIGVIGVPGDRQDDIIIKVGQIAGQGFDKII 790

Query: 415 VTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +D +PR   P ++ + +  G+          I     I A+  A+E+  + D++V+
Sbjct: 791 IKEDADPRGRKPGEVASLLKKGVQAGGCSGKDVIIILKEINAVLKAVEIAERGDLVVI 848


>gi|77460893|ref|YP_350400.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
 gi|109892724|sp|Q3K745|MURC_PSEPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77384896|gb|ABA76409.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
          Length = 486

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 144/430 (33%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A A  A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAA--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +          +
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  +             F
Sbjct: 170 AEADESDASFL---------------HLQPLVAVVTNIDADHMATYDGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++          ++ G+ +   +    V     +   T 
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPLVKRP---TVTYGFSEDADVRAINVRQQGMQTFFTV 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
           +  + +  D    +PG   V N+L    +    G+    +++ L     V  RF+    +
Sbjct: 272 LRPDREPLDVSVNMPGNHNVLNSLATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGEL 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +     +  DY H    +  ++K +R      R+++V+                  L 
Sbjct: 332 PVDGGNVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVNVLA 391

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQ 459
            A++ ++ +  P  E+P  I       +   I +  +++   I   +++           
Sbjct: 392 DANVLLLMEVYPAGEEP--IPGADSRKLCNSIRQRGQLDPIYIERGVDLAPLVKPLLRAG 449

Query: 460 DVLVVAGKGH 469
           D+L+  G G 
Sbjct: 450 DILLCQGAGD 459


>gi|332976984|gb|EGK13797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 474

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 136/354 (38%), Gaps = 26/354 (7%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++           ++I  +  I+ V +  + +   A+  + +    + AVTG++GKS
Sbjct: 88  AAAVL-----PEGISWSSIPKSVAIVRVSDVNQAIWRLANWNWRQVRPQVAAVTGSAGKS 142

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  I +RS       G  +T +         +P   +L      +   G+   + 
Sbjct: 143 TTTSMVTSILKRSRRVVHTQGNLNTFTYLPSYLLRLSPGDEFL------MLEMGMKSFNN 196

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A      Q R+  ++   G+ TN+G  H            AK  L + L P  +   + 
Sbjct: 197 IAR-----QCRV--VRPEVGAVTNVGEAHAGQLGGVHRVVKAKQELIDGLRP-GATLYLN 248

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           AD   SK++  R       V + G +    I    +    N     +  EGK   F  P 
Sbjct: 249 ADCLRSKQLSTR--RFRGSVYTFGIRNPADIQGSNIQYSTNGVSFDVMTEGKRGRFFIPT 306

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V NAL A G+  A+GI    + + L K+ +   R + +  +     I   +    
Sbjct: 307 WGDHNVLNALAAIGIARALGIGFHQIRDGLAKVKLPRMRLQRIRGSHGRTLINDAWNANP 366

Query: 367 NSLEMILKNIRTITSG-RIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVT 416
           ++++  L  +R ++S    I V G   +     +     +G+ A  +    ++T
Sbjct: 367 SAMKAGLSVLRYLSSKRPGIAVLGDMMELGGYTRAGHREVGRFAARMNLHQLIT 420


>gi|330811578|ref|YP_004356040.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379686|gb|AEA71036.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 486

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/432 (15%), Positives = 136/432 (31%), Gaps = 57/432 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAN--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +          +
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  +             F
Sbjct: 170 AEADESDASFL---------------HLQPLVAVVTNIDADHMATYDGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++             G +     +             + 
Sbjct: 215 LHNLPFYGLAVVCLDDPVVREILPLIKRP-TMTYGFGEEADVRAINVRQQGMQTFFTVLR 273

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGT 351
            + +  D    +PG   V NAL    +    G+    +++ L     V  RF+    +  
Sbjct: 274 PDREPLDVSVNMPGNHNVLNALATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPV 333

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     +  DY H    +  ++K +R      R+++V+                  L  A
Sbjct: 334 DGGNVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVQVLADA 393

Query: 411 DIAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEML-------N 457
           ++ ++ +  P  E+  P     ++ H I        R +     I   +++         
Sbjct: 394 NVLLLMEVYPAGEEPIPGADSRQLCHSIRQ------RGQLDPIYIERGVDLAPLVKPLLR 447

Query: 458 KQDVLVVAGKGH 469
             D+L+  G G 
Sbjct: 448 AGDILLCQGAGD 459


>gi|317402452|gb|EFV83021.1| UDP-N-acetylmuramate-L-alanine ligase [Achromobacter xylosoxidans
           C54]
          Length = 468

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 91/423 (21%), Positives = 143/423 (33%), Gaps = 52/423 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+AIV S+A +  +          I VV      L+       G      +AV GT GK
Sbjct: 64  GADAIVTSTAVAGDNPEVIAARAARIPVVPRAIM-LAELMRLKRG------IAVAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  I          + PT  I                L  A +        ++ 
Sbjct: 117 TTTTSLVASILAA-----GDLDPTFVIGGR-------------LNSAGANARLGQGDYIV 158

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA     D   L+ +  +    TN+  DH+D +    A   +    F + LP    A++
Sbjct: 159 VEADES--DASFLNLL-PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKD-----F 300
             DDA  +E+M         + S G     +    +V A   + +  +    +D      
Sbjct: 216 CTDDANVREIMPFVSRP---ITSYGLNEDAMVRGYEVQADGTRMRFNVQRSHRDTLLPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGG 356
                LPG   V NAL A  +   +G+    + + L     V  RF    EF      GG
Sbjct: 273 QVELNLPGLHNVRNALAAIAVATELGVSDEAIRDALASFKGVGRRFTQTGEFPVPAVHGG 332

Query: 357 ---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADI 412
               +  DY H    +   L   R     R IV+ F                  L  AD 
Sbjct: 333 GTFTVIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGTADA 392

Query: 413 AIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++T+     E P          RA  + G    +   +  +  +  ++ +   DV++V 
Sbjct: 393 VLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVADLPQAVVDFVRDGDVVIVM 452

Query: 466 GKG 468
           G G
Sbjct: 453 GAG 455


>gi|311113341|ref|YP_003984563.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
 gi|310944835|gb|ADP41129.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
          Length = 494

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 147/435 (33%), Gaps = 46/435 (10%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSL-----FASRL 109
           I      GA       A ++ D      S  I  + P L+    +    L      A+ +
Sbjct: 66  IQALREAGARVYTPQDAANIHDIDTVVISTAIHEDNPELIAARAQNLRVLHRSEALAAAM 125

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++AV GT GKS+ +S +  +  + G        T      +      T    +
Sbjct: 126 GA---SQVVAVAGTHGKSTTSSMIAVMLDKLGFHPSFAVGTVIAGYGSNARLGATGEGSW 182

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                       V +                  +      TN+  DH+D+++T +  + A
Sbjct: 183 FVAEADESDGSFVRY------------------QPAIAVVTNVEPDHLDFYETPERVYEA 224

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNK 288
             R    ++P     +   DD  ++ + +RA +AG  V++ G      + + ++ +  ++
Sbjct: 225 FNRFVASMVP-GGVLVTCWDDEGARALAERARDAGIEVVTYGQSTEADLRVSRITSHGSE 283

Query: 289 QQVTISVEGK--------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              T+    +        + D    +PG     NA  A    +  G         L    
Sbjct: 284 SSATLRWSFECASKHYEGEQDAQLRVPGIHNQLNAAAAFITALLAGAQPEDAAAALYGFG 343

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKR 399
               RF   G  + G +++ DYAH    +   L+  RT+  G  + VVF         + 
Sbjct: 344 GADRRFTLRGDVA-GIKVFDDYAHHPTEVFRALETGRTVADGHNLYVVFQPHLFSRTQEF 402

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII--HGIPGFIEKGNRIEAIRTAIEML 456
                 AL  AD + V D  P  E P E + +E+I   G        +   AI       
Sbjct: 403 AADFAQALSKADRSYVLDIYPARELPIEGVTSELITGAGFSEVHYASDAAAAIEDIAMCA 462

Query: 457 NKQDVLVVAGKGHET 471
              D+++  G G  T
Sbjct: 463 VPGDIIMTIGAGDVT 477


>gi|168215842|ref|ZP_02641467.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239]
 gi|182381983|gb|EDT79462.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239]
          Length = 874

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 166/406 (40%), Gaps = 31/406 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G   F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIG---FNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI- 217
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 218 -DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVKS-LVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVAAGLCIA 324
           +     L      +  + + +   GK++         F      +  + NA+ A    + 
Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +   
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLK 756

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI----- 436
            I  + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+     
Sbjct: 757 NITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNR 816

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                    +  EA+R  +++  K + +++  + +E+++ + N  K
Sbjct: 817 KDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFK 862


>gi|161870654|ref|YP_001599827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis 053442]
 gi|189082912|sp|A9M2H5|MURD_NEIM0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|161596207|gb|ABX73867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 053442]
          Length = 445

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 166/422 (39%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T          
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP--------- 148

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                  + +A      +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 149 -------VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K ++F      +   ++ ADDA+ + + +       +  S+ Y+  F   ++ 
Sbjct: 200 LLDYAHTKDKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEYEADFWLERET 253

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +    +  I+ +        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 254 GRLKQGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +A     + ++        D  +IR ++        +     EA++ A       D++
Sbjct: 363 DALAGKAKGVFLI------GVDALQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|262377183|ref|ZP_06070408.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
 gi|262307921|gb|EEY89059.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
          Length = 482

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 138/422 (32%), Gaps = 53/422 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  IVVS+A   ++          I VV    + L       +G      +AV GT G
Sbjct: 80  KGANVIVVSTAIDKENPEIKTAIENRIPVVRRA-EMLGELMRYRHG------IAVAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +     +      PT  I        +                +  +   
Sbjct: 133 KTTTTSLITCMLAEENMD-----PTYVIGGLLNRTGM----------------NAALGAS 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +           ++ +A   TN+  DH+D +             F + LP    A+
Sbjct: 172 RYIVAEADESDASFLHLEPMAAVVTNIDADHMDTYGGSFDVLKDTFIQFLQKLPFYGLAV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFL 303
           +  DDA  +E+M R       +L+ G+ +   I    V     +   T +  E +     
Sbjct: 232 VCGDDANIREIMPRIARP---LLTYGFNEDNDIRAVDVDQDGMQTHFTVLRKEREPLRVT 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYV 360
              PG   V NAL A G+    G+  A +   LE    V  RFE  G         ++  
Sbjct: 289 VNQPGLHNVLNALAAIGIATDEGVSDASICRALEGFSGVGRRFEVQGEFAIEGGDVKLVD 348

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +E  +K  R +    R++++F                  L   D  ++ D  
Sbjct: 349 DYGHHPKEVEATIKAARQSHPDRRLVMMFQPHRYSRTRDCFDDFVEVLSTVDQLLLLDVY 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML------------NKQDVLVVAGK 467
           P  E P  I       +   I     +E I   ++                 D+L+  G 
Sbjct: 409 PAGEKP--IVGADSRSLARSIRLRGEVEPI--LVDAADGNLNQIMRKVLQANDLLLTQGA 464

Query: 468 GH 469
           G+
Sbjct: 465 GN 466


>gi|171913124|ref|ZP_02928594.1| UDP-N-acetylmuramate--alanine ligase [Verrucomicrobium spinosum DSM
           4136]
          Length = 770

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 84/422 (19%), Positives = 151/422 (35%), Gaps = 59/422 (13%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ ++ SSA       + A  R   P++      + L+   +R +G      + V GT 
Sbjct: 74  GADMVIYSSAVKPGNPAYEAAYRHGIPLV---RRAEALAAIMARKHG------VVVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++ +S    + +  G                        + I +  + ++    G   
Sbjct: 125 GKTTTSSMAAHVLRVGGAK----------------PSHYVGAEIPILGSNAHWDDAGELF 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESP 243
           V+    S G     L   +       N+  +H+DY++           +F +LL K    
Sbjct: 169 VAEGDESDG----TLVKFEPRHAIILNIEAEHLDYYEDLNEIK----LVFRQLLEKTSGY 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--D 301
           ++  A+D  + E+ +   N     +S G+         +  +   Q      +  +   +
Sbjct: 221 SVYCAEDPVATELCEGRKNG----ISYGWSRDHNFSANILELRPAQTRYEVFQKGELLGE 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L  +PG   V N+L A  L +++G+  + + + LE       RFE   + S+  +I  D
Sbjct: 277 VLLGIPGRHNVLNSLAAISLAVSVGVPFSSIKQALESFRGARRRFEVKYSGSQ-YQIIDD 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H    ++  L   + +   RI+ +F                 A +  D+  VTD    
Sbjct: 336 YGHHPTEIKATLATAKALNPKRIVCLFQPHRYSRTQLLKQEFGGAFNDVDVLCVTDVYAA 395

Query: 422 SEDP------EKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKG-- 468
           SE P      E I  E+    PG          N  + I      L   D+L+  G G  
Sbjct: 396 SEKPLPGVSGETILEEVKLQAPGVECHSTPKLLNARDLIG---SKLRPGDLLITLGAGNV 452

Query: 469 HE 470
           HE
Sbjct: 453 HE 454


>gi|161526009|ref|YP_001581021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349274|ref|YP_001944902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
 gi|160343438|gb|ABX16524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189333296|dbj|BAG42366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
          Length = 468

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 155/447 (34%), Gaps = 36/447 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR + AG +FVA+ G + D H F+          +    A +     A   
Sbjct: 24  VTFERVSTDSRTVGAGDLFVALKGERFDAHDFL--------ADVAARGAAAALVAQAPAG 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++V   TR  L   A     +    ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  IALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAAVGAHARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +++                  L   ++  +  + +  +  G  +           
Sbjct: 136 ATAGNLNN----------DVGLPLTLLRLAAAHRLAVIELGMNHRGETEILARLTAPTVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A       +    LP +  A+  ADDAY+     R    G R+
Sbjct: 186 LVNNAQREHQEFMATVEAVALEHAAVI-HALPPDGVAVFPADDAYASIW--RVAATGNRI 242

Query: 268 LSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L             +V    +  ++ I              GE    NAL A    +A G
Sbjct: 243 LDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAATAAALAAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           +  + + + LE    V GR +    ++    G  +  D Y    +S+   +  +    + 
Sbjct: 303 VALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP 362

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           R++V+   G   D+G    R +         D      D  R        A        F
Sbjct: 363 RVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDA-----CAAYGEAARHF 417

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + G  ++A+  A    +    ++V G
Sbjct: 418 DDVGTLVDALLAAGYGADAS--VLVKG 442


>gi|328675939|gb|AEB28614.1| Cyanophycin synthase [Francisella cf. novicida 3523]
          Length = 940

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 146/393 (37%), Gaps = 41/393 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   R YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPREYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKV---VGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-- 221
                  A A   L    V    +E +  GL +  L       G+  N+  DH+      
Sbjct: 540 AGDTTGPASAQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNVSADHLGLKGIN 599

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + E     +  A++ ADD    ++  +        +++  +   +  + 
Sbjct: 600 TLEDLAKVKSIVVEA---AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVK-QH 655

Query: 282 VCAIHNKQQVTISVEG---KDFDFLFPLPGE--------------FQVYNALVAAGLCIA 324
           + A      +   V G     FD    +P                  V N++ A  +C +
Sbjct: 656 IRAGGKACIIEKGVNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYS 715

Query: 325 IGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +G+    + + L       +  PGR  +        ++ +DY H   +++++ + I  + 
Sbjct: 716 MGMSLDDMRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIMNME 773

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEK---IRAE--II 433
            +G+ I V    GDR       + K A    D  I   DD+ R   P++   I  E  I 
Sbjct: 774 FAGKKICVLASPGDRRDEDIVELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIE 833

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI         +  EA+  A+ M  + D++V+
Sbjct: 834 AGISIDNIEIIESEKEAVDAALNMAEEGDLVVI 866


>gi|289704959|ref|ZP_06501374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
 gi|289558295|gb|EFD51571.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
          Length = 504

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 150/463 (32%), Gaps = 58/463 (12%)

Query: 36  DSRHIQ-AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           DSR +   G ++VA  G + DGH FI  A+  GA A++   A    D +A      P ++
Sbjct: 33  DSREVTAEGTLYVAKPGERADGHDFIDAALGAGAAAVLAERATHAPDGAAH-----PAII 87

Query: 95  VDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           V++    +   A     R+    P  ++ +TG++GK++    +  +    G +   +G  
Sbjct: 88  VEDAVLAMGALAREIVRRVREHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPVGSY 147

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L      +   G  HV       G   +  D ++   G   
Sbjct: 148 NGEVGVPLTVFRAELDTRSL------VVEMGADHV-------GNIAYLCDIVRPDIGVVL 194

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +G  H             K  L E L P +  A++  DD     +  R         + 
Sbjct: 195 MVGTAHAGSFGGVANIARTKGELVEALGP-DGVAVLNLDDERVAGMAARTAAPITW-FTA 252

Query: 271 GYQGKFIHLKKVCAIHNKQQV---TISVEGKD----------------FDFLFPLPGEFQ 311
             +G     + V A      V    +  + ++                      L G   
Sbjct: 253 DERGVARAAEDVAAGRASGLVAARDVRADDQERPLFDLQVGTDEAAVRHPVASGLTGLHH 312

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           V+N L AA    A G+D A +   L+ L             + G  I  D Y     S+ 
Sbjct: 313 VHNVLAAAAAAHAAGMDPAEIARGLDGLGPASRFRMERTDRADGVTIINDAYNANPESMR 372

Query: 371 MILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRS 422
             L+ + T+   +  R   V G   +    +      +      L++A + +V       
Sbjct: 373 AALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVVRLNIAQLLVVG----AG 428

Query: 423 EDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             P  I A              +  +A     E L   D+++V
Sbjct: 429 ARPLYIGALNEGSWGEEAHFVDDAAQAEAFLTEHLRPGDLVLV 471


>gi|117928219|ref|YP_872770.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus
           11B]
 gi|189028966|sp|A0LTM4|MURC_ACIC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117648682|gb|ABK52784.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus
           11B]
          Length = 477

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 92/421 (21%), Positives = 145/421 (34%), Gaps = 45/421 (10%)

Query: 67  GAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA   V      L D      S  +   TP L V   R        +  AS + G+    
Sbjct: 63  GARVTVGHDPAHLSDVDTVVASTAVPPTTPELAVARERGLPVLPRAAALASVMAGR---R 119

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S V +  QR G             SFA    L  P           
Sbjct: 120 GVAVAGTHGKTTTTSMVVRALQRCGADP----------SFAIGADLGEPGSN-------- 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +  G   + V  +    +   L  +   A   TN+  DH++++    A   A  R F  
Sbjct: 162 -AHDGTGSIFVAEADESDESFLL--LPFHAAVVTNVEADHLNHYADLAAIHAAFDR-FVA 217

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
            +P     +   DD  ++E+  RA   G  V   G   +  + L  +       +  +++
Sbjct: 218 KVPDGGFLVACTDDPGAEEIASRAARRGTVVRRYGTSPRADVRLVDLRLEVAGSRFAVAM 277

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G    +    +PG     NA  A  + + +G   + V E L        RF+  G  + 
Sbjct: 278 DGTVLGELQLRVPGAHNALNATAAVAVTVGLGFPFSEVAEGLADFTGARRRFQPQGEVA- 336

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIA 413
           G R++ DYAH    +   L+  R +  G  +VV F                 AL LAD  
Sbjct: 337 GIRVFDDYAHHPTEIAATLRAARVVADGGRLVVAFQPHHYYRTADFRTEFGAALALADEV 396

Query: 414 IVTDDNPRSED--PEKIRAEIIHGIP---GFIEKGNRIEAI-RTAIEMLNKQDVLVVAGK 467
           +V +     E   P    A +   +P     +       A+           D++V  G 
Sbjct: 397 VVMEVYAPGETPLPGGTGAALAAAVPLPGSAVVFEPSWSAVPEHLAARARPGDLIVTMGA 456

Query: 468 G 468
           G
Sbjct: 457 G 457


>gi|182626262|ref|ZP_02954019.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908441|gb|EDT70979.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721]
          Length = 874

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 166/406 (40%), Gaps = 31/406 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G   F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIG---FNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI- 217
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 218 -DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVKS-LVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVAAGLCIA 324
           +     L      +  + + +   GK++         F      +  + NA+ A    + 
Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +   
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLK 756

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI----- 436
            I  + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+     
Sbjct: 757 NITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNR 816

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                    +  EA+R  +++  K + +++  + +E+++ + N  K
Sbjct: 817 KDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFK 862


>gi|256827367|ref|YP_003151326.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
 gi|256583510|gb|ACU94644.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
          Length = 471

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 93/430 (21%), Positives = 152/430 (35%), Gaps = 47/430 (10%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--EN 116
           FI QA       I  + A  +   S  I  N P L+    R       +R+  +    + 
Sbjct: 54  FIGQAAEN----IPDNPAPDVVVTSTAILDNNPELIAAKARNLPIWHRARMLAQLGVGKK 109

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++ +S V       G       PT  I    +       S          
Sbjct: 110 TIAIAGTHGKTTTSSMVASALDGIGAD-----PTFLIGGIVRAYHTNAHSGEG------- 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  +  VEA         LD     A   TN+  DH+D++   +    AK   F  
Sbjct: 158 ------AYYVVEADESDKSFTYLD---PYAVLVTNVEADHLDHYNDLEEIH-AKFTEFMS 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISV 295
            +P +   ++ ADD     ++  A + G R+++ G  +G   H++           T+ +
Sbjct: 208 QVPDDGLLVVCADDEV---LVSLAASTGKRMVTYGSAEGADAHIESWAPAGVGSTFTLKL 264

Query: 296 EGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +   PG   V NA     L   IG D+  V   L     V  RF+ VG  +
Sbjct: 265 PDGTLVEGSVKQNPGRHNVLNAAGTLTLLWGIGEDAQDVARSLSNFAGVRRRFDLVG-EA 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI----MGKIALDL 409
            G  I  DYAH    +   +   + +   R+ V+F        G            A D 
Sbjct: 324 DGVTIVDDYAHHPTEIAATIAAAKKLDFKRVHVLFQPHRYSRVGLFTDVLRSEFAHAFDE 383

Query: 410 ADIAIVTDDNPRSEDP-----EKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           AD A   D  P  E P      K   +++      P  +   +R++ + + ++M+   D+
Sbjct: 384 ADTAAFMDVYPAGETPVPGVNGKTFLDVLKDSSSHPALVYIPHRLDTVSSLLDMVEAGDL 443

Query: 462 LVVAGKGHET 471
           ++  G G  T
Sbjct: 444 VLTMGAGDVT 453


>gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter heparinus DSM 2366]
 gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366]
          Length = 817

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 153/420 (36%), Gaps = 34/420 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLF 59
           +  LIY +   +   L I   +  ++  I+++  DSR +    G +F A+ G + DGH F
Sbjct: 1   MSSLIY-NIKHIAGILGIKNFEVQKDAIISKLVIDSRSVIDPDGSLFFALKGQR-DGHGF 58

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  A A G    V+S A   + F      +  IL+V +    L   A     ++   +L 
Sbjct: 59  LKDAYANGIRNFVISEAKYTRLFP-----DANILLVQDVLLALHTIAKYNRNQYDLKVLG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK+ V  ++ Q+                 S  + ++++  P  ++   A+  L  
Sbjct: 114 ITGSNGKTIVKEWLYQLLAA--------DHNIVRSPKSFNSQIGVPLSVWEITAIHTLGI 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                     S           IK   G  TN+G  H +   + +     K++LF     
Sbjct: 166 FEA-----GISKTDEMDALASMIKPNVGILTNVGEAHAEGFVSLKEKLLEKLKLF----- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            ++   IYA   Y+  +         +      Q   + +  V  I  K  +    +G +
Sbjct: 216 NDADLFIYA-PEYTAGLSTDDLPGKTKFSWSKKQQADLQILFVEPIDGKNYIRADFKGIE 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            + L P   +  V N ++     +A+G       + LEKL  V  R E     ++   I 
Sbjct: 275 IECLIPFSDQASVENGIICWATLLALGYTPEEADKRLEKLTRVSMRLELKNGINQCSVID 334

Query: 360 VDYAHTSNSLEMILKN---IRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAI 414
             Y+   +SL + L             +I+  ++  G         I   +     D  I
Sbjct: 335 DSYSADISSLAIALDFLNLQNQHPKKTLILSDIYETGKTNRVLYTEIAALLKQKHVDRLI 394


>gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 91]
          Length = 289

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 108/304 (35%), Gaps = 23/304 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALG 284

Query: 309 EFQV 312
           E   
Sbjct: 285 EHNA 288


>gi|240128804|ref|ZP_04741465.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268687186|ref|ZP_06154048.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627470|gb|EEZ59870.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 506

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 101 NGADVVVASTAVKKENPEVVAALERQIPVIPRALM-LAELMRFRDG------IAIAGTHG 153

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 154 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 195

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 196 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 252 FLCVDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 309 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 368

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPDKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  + A     +   I    ++E I         +  + +L   DV++ 
Sbjct: 429 VLTEVYAAGEEP--VAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVLN 486

Query: 465 AGKG 468
            G G
Sbjct: 487 MGAG 490


>gi|168205550|ref|ZP_02631555.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987]
 gi|170662912|gb|EDT15595.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987]
          Length = 874

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 166/406 (40%), Gaps = 31/406 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G   F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIG---FNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI- 217
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 218 -DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVKS-LVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVAAGLCIA 324
           +     L      +  + + +   GK++         F      +  + NA+ A    + 
Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +   
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLK 756

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI----- 436
            I  + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+     
Sbjct: 757 NITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSANR 816

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                    +  EA+R  +++  K + +++  + +E+++ + N  K
Sbjct: 817 KDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFK 862


>gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 822

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 139/386 (36%), Gaps = 29/386 (7%)

Query: 28  RKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++  + +DSR +      +F A+   + DGH +IP+   +G  + VVS          T
Sbjct: 22  VEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRLPE----DMT 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +   L V +  K L   A R        ++ +TG++GK+ V  ++ Q+         
Sbjct: 78  SCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQLLS------- 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
              P   ++   +        P+ +           V       S  G  +     I+  
Sbjct: 131 ---PEKNVTRSPRSYNSQIGVPLSVWNLDER---SEVGLFEAGISEPGEMEALQSVIQPT 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMKRAHNA 263
            G FT LG  H +   + +     K++LF     K++  ++Y  D       V + A   
Sbjct: 185 IGVFTCLGDAHQENFTSYEQKCLEKLKLF-----KDAKVLVYDMDDARVVGCVNRSAFKG 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                S   +   +++  V     +  V+   +GK+     P   E  + N++    +C+
Sbjct: 240 EYFAWSRQRRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVSCLAVCL 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI--RTITS 381
            +G+    +   +  L  V  R E     S    I   Y    NSL++ L  +  R   +
Sbjct: 300 HLGMSPETIAARMAVLEPVAMRLEVKEGRSGCTLINDSYNSDYNSLDIALDFMNRRPDCA 359

Query: 382 GRII-VVFGCGGDRDQGKRPIMGKIA 406
           GR   ++             + G++A
Sbjct: 360 GRKRTLILSDIEQAGGAPEDLYGRVA 385


>gi|319411051|emb|CBY91451.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           WUE 2594]
          Length = 445

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 165/418 (39%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ ADDA+ + + +       +  S+ Y+  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEYEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|218768812|ref|YP_002343324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis Z2491]
 gi|30316128|sp|Q9JSZ5|MURD_NEIMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121052820|emb|CAM09167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis Z2491]
          Length = 445

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 163/418 (38%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A++ G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKRNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G                  
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIG--------------- 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   L     +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 147 APVLEAELQR-EGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ ADDA+ + + +       +  S+ Y+  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEYEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++ A       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|163738719|ref|ZP_02146133.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
 gi|161388047|gb|EDQ12402.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
          Length = 465

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 144/423 (34%), Gaps = 45/423 (10%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+ QA      A  +V+SSA    +          + VV        L          ++
Sbjct: 60  FVGQAAENLEDAAVVVISSAIKPGNPELDEARLRGLPVVRRAEMLAELMRL-------KS 112

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + + +    +G     I     I ++  + R+     +        
Sbjct: 113 NIAIAGTHGKTTTTTMMAE-LMVAGHFDPTIVNGGIIHAYGSNARMGQGEWM-------- 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VEA       +RL          TN+  +H+++        +     F  
Sbjct: 164 ---------VVEADESDGTFNRLPAT---IAVVTNIDPEHMEHWGDFDTLRDG-FYDFVS 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV 295
            +P    A+   D    + ++ R  +   RV++ G+     +    +          I +
Sbjct: 211 NIPFYGVAVCCTDHPEVQALVGRITDR--RVVTYGFNAQADVRAVNLTYKAGVAHFDIHL 268

Query: 296 EGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + +D        P+PG+  V NAL A  +   +G+ S+ + E L     V  RF  VG  
Sbjct: 269 QAEDRVIEGCTLPMPGDHNVSNALSAVAVARHLGMKSSEIREALAAFGGVNRRFTKVG-E 327

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I  DY H    +  +LK  R    GR+I V                    + AD+
Sbjct: 328 VDGVTIIDDYGHHPVEITAVLKAARQACDGRVIAVHQPHRYSRLSSLFEDFCACFNEADV 387

Query: 413 AIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVA 465
             + +     EDP     R +++ G+     +  R      +  R   E     D++V  
Sbjct: 388 VAIAEVFAAGEDPIEGAGRDDLVAGLIRHGHRHARALLDESDLERLVREQARPGDMVVCL 447

Query: 466 GKG 468
           G G
Sbjct: 448 GAG 450


>gi|239999603|ref|ZP_04719527.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           35/02]
 gi|240014778|ref|ZP_04721691.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           DGI18]
 gi|240081137|ref|ZP_04725680.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|240113349|ref|ZP_04727839.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|240116304|ref|ZP_04730366.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID18]
 gi|240118591|ref|ZP_04732653.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|240121301|ref|ZP_04734263.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID24-1]
 gi|240124134|ref|ZP_04737090.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID332]
 gi|240126250|ref|ZP_04739136.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254494318|ref|ZP_05107489.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268595414|ref|ZP_06129581.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268597248|ref|ZP_06131415.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268599423|ref|ZP_06133590.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268601971|ref|ZP_06136138.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268604302|ref|ZP_06138469.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268682759|ref|ZP_06149621.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268684831|ref|ZP_06151693.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043155|ref|ZP_06568878.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|293398491|ref|ZP_06642669.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
 gi|59718763|gb|AAW90168.1| putative UDP-N-acetylmuramate--alanine ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|193934636|gb|ACF30460.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513358|gb|EEH62703.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268548803|gb|EEZ44221.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268551036|gb|EEZ46055.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268583554|gb|EEZ48230.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268586102|gb|EEZ50778.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268588433|gb|EEZ53109.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268623043|gb|EEZ55443.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268625115|gb|EEZ57515.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012761|gb|EFE04744.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|291610962|gb|EFF40059.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
          Length = 506

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 101 NGADVVVASTAVKKENPEVVAALERQIPVIPRALM-LAELMRFRDG------IAIAGTHG 153

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 154 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 195

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 196 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 252 FLCVDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 309 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 368

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  + A     +   I    ++E I         +  + +L   DV++ 
Sbjct: 429 VLTEVYAAGEEP--VAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVLN 486

Query: 465 AGKG 468
            G G
Sbjct: 487 MGAG 490


>gi|328478046|gb|EGF47933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus MTCC 5462]
          Length = 462

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 145/416 (34%), Gaps = 46/416 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIF---VA-IVGNKE 54
           MK+         E+   +   P+      +    V+ DSR ++ G +    VA + G   
Sbjct: 1   MKMT------LAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLLSHCVASVTGTSL 54

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKH 113
                    + +G   ++             + +  P LVV +    +   A      K 
Sbjct: 55  FQRR-----LLRGQSQLLWQRTI------CQMTTKLPTLVVPDPLAAMQKLAQYYLLMKV 103

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++A+TG++GK++       I         Q     T  ++  +  +           
Sbjct: 104 NPKVVAITGSNGKTTTKDMTAAILAT------QYHVVKTPDNYNNEIGVPM-------TI 150

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS   +  V  + +     G         +      T +G  HI++ +T+    +AKM +
Sbjct: 151 LSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEI 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT 292
            + L  ++   I   D+     ++ RA        + G   +       +    N  + T
Sbjct: 211 TDGL-KEDGTFIFNGDEPL---LVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFT 266

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +  +  F  P+ GE+ V NAL A  +     +    + + L    V   R +++   
Sbjct: 267 VE-QWPELTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALAHFQVTANRTQWL-IG 324

Query: 353 SRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             G +I  D Y     +++ ++ +     T+GR I V G   +  +  R +   +A
Sbjct: 325 DVGEQILSDVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGEQSRTLHAGLA 380


>gi|300933353|ref|ZP_07148609.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium resistens
           DSM 45100]
          Length = 481

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 98/465 (21%), Positives = 155/465 (33%), Gaps = 71/465 (15%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQGA---EAIVVS-SAYSLQDFSATIRS 88
           DSR I      +A+   G   + GH      +  G      +V S +A    +   +   
Sbjct: 41  DSRSI------LALRTAGATVNIGHS--AANLTAGGELPTVVVTSFAAIPQDNPELSAAR 92

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQI 147
           +  I VV  +     L   R           + GT GK+S  S      Q +G    F I
Sbjct: 93  DNNIPVVRRSDVLAQLMVDR-------RAFLLAGTHGKTSTTSMAVAALQAAGWDPSFAI 145

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G     +     +                    G   V+    S G         +    
Sbjct: 146 GGQLNRAGTNAHHGT------------------GDVFVAEADESDGSFLSY----QPEVA 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------AH 261
             TN+  DH+DY  T++AY       F   +      ++  DDA S+ + +       A 
Sbjct: 184 VVTNVEPDHLDYFGTEEAY-REVFERFAGCVVTGGTLVVCLDDAGSRALAQSLSRSIPAD 242

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-----------LPGEF 310
               R+L  G +       +V A    + + I+  G +    F            +PG  
Sbjct: 243 ERDYRILGYGTRAAVEDAPEVEAGAIIEDMRITPAGTEVSVRFFDDEAPRVLRVAIPGSH 302

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NA  A      +G D   +LE + +   V  RFE+ G +     +Y DYAH    + 
Sbjct: 303 MVLNATAAVLGGALLGADIDKLLEGIAEFDGVRRRFEYHG-SVNDVHVYDDYAHHPTEVT 361

Query: 371 MILKNIRT----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +L   R        GR+I VF                 AL LAD  ++ D     E+P 
Sbjct: 362 AVLSAARERIEAQGKGRVIAVFQPHLYSRTMTFADEFAAALSLADEVVLLDIFGARENPV 421

Query: 427 KIRAEIIHG--IPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
           +     + G  +    E      A+ RT  ++    D+++  G G
Sbjct: 422 EGVDSRVIGDKVTVPWEYAPEFNAVPRTVSKLTRPGDMVLTIGAG 466


>gi|75908537|ref|YP_322833.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
 gi|109892691|sp|Q3MAP8|MURC_ANAVT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|75702262|gb|ABA21938.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
          Length = 494

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 136/414 (32%), Gaps = 50/414 (12%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +    ++ A I    PIL   +    L      +   H    +AV GT GK++
Sbjct: 96  VVCSTAINSNNLEYQAAIELGCPILHRSDVLAAL------INDYHS---VAVAGTHGKTT 146

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    I                    +   +  + L          +
Sbjct: 147 TSSMIGYMLLEAGLDPTII----------------VGGEVNAWEGNARLGQSPYLVAEAD 190

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++ T +   +    +F+         I   
Sbjct: 191 ESDGSLVKH-----APEIGIITNIELDHPDHYDTLEEVVD----IFQTFAKGCKTLIGSV 241

Query: 249 DDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FL 303
           D A  +E+++  A +     ++            V  I  +   T ++  +         
Sbjct: 242 DCATVRELLRTAASDRQQPTITYSLHQDTEADYTVTNIDCRADGTTALVWEKGKALGVLK 301

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L     + NAL A  +   +G++   + + +        RFEF G    G     DYA
Sbjct: 302 LKLLSRHNLSNALAAVAVGRLVGLEFGEIAKGIAGFEGARRRFEFRG-EVDGITFIDDYA 360

Query: 364 HTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           H  + +   L   R       R++ +F                 +   AD+ ++TD    
Sbjct: 361 HHPSEIRATLAAARLQARPGQRVVAIFQPHRYSRTLTFLEEFSESFSHADLVVLTDIYSA 420

Query: 422 SEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E        E++  +I    P  + +          ++ L   D+ +  G G+
Sbjct: 421 GEPNLGLISGEQLAEKIAQEHPQVVYQPTLSTVCEYLLKNLRPGDLALFLGAGN 474


>gi|241762280|ref|ZP_04760361.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752697|ref|YP_003225590.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|241373183|gb|EER62813.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552060|gb|ACV75006.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 476

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 124/367 (33%), Gaps = 39/367 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +          I VV        L          ++ +AV GT GK+
Sbjct: 68  AAVVVVSSAIHRGNPEVEAALENRIPVVRRAEMLAELMRL-------KSTVAVAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G+    I     I+S+  + RL     +                  V
Sbjct: 121 TTTSMVAALLDAGGIDPTVING-GIINSYGSNARLGDSDWM-----------------VV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RLDG        TN+  +H+D++ + +   +A +  F   +P    A + 
Sbjct: 163 EADESDGSFLRLDGT---LAIVTNIDPEHLDHYGSFEKVQDAFVE-FVSNVPFYGAAFLC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            D    + ++ R  +          Q   I    +  I    + T  +  +D D      
Sbjct: 219 IDHPVVQSILPRIRDRRLITYGFSAQAD-IRAVDITPISGGNRFTAVIRSRDGDIRRIEN 277

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRI 358
              P+PG   + NAL A G+ +   I  A + +   +   V  RF  VG    G     +
Sbjct: 278 IFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRVGEIKIGDGSVLV 337

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H    ++ +L   R     R+I V                + A + AD+  V   
Sbjct: 338 IDDYGHHPVEIKAVLSAARESAQQRVIAVVQPHRFSRLHDLMTEFQSAFNDADMVFVAPV 397

Query: 419 NPRSEDP 425
               E P
Sbjct: 398 YAAGEQP 404


>gi|254673375|emb|CBA08647.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha275]
          Length = 429

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 24  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 76

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 77  KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 118

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 119 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 174

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 175 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 231

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 232 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 291

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 292 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 351

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 352 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 409

Query: 465 AGKG 468
            G G
Sbjct: 410 MGAG 413


>gi|161596204|gb|ABX73864.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           053442]
          Length = 451

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 46  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 98

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 99  KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 140

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 141 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 196

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 197 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 253

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 254 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 313

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 314 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 373

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 374 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 431

Query: 465 AGKG 468
            G G
Sbjct: 432 MGAG 435


>gi|255007708|ref|ZP_05279834.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis 3_1_12]
          Length = 831

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 149/420 (35%), Gaps = 33/420 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              ++ +     +  +   I+ + +DSR +      +F AI   + +G  +IP    +G 
Sbjct: 5   IESIVEKTGARRLGNKPATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGV 64

Query: 69  EAIVVSSAY------SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              VV+S          +    T+      L+V NT K L   + +  G     ++ +TG
Sbjct: 65  RNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIGITG 124

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+ V  ++ Q+            P   I    +        P+ + + ++  S  G+
Sbjct: 125 SNGKTIVKEWLHQLLS----------PDRVIVRSPRSYNSQIGVPLSVWQ-MNEESELGI 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +  S  G  +   + IK   G  TN+G  H +   + Q     K+ LF++      
Sbjct: 174 FEAGI--SEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDC----D 227

Query: 243 PAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             I   D+   S  V K    A     S+    + +++ +V    +   ++      D  
Sbjct: 228 VVIYNGDNEMISNCVGKSMLTAREIAWSMKDIERPLYISRVEKREDHTVISYRYLEMDNT 287

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +    I   
Sbjct: 288 FCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNCILINDS 347

Query: 362 YAHTSNSLEMILKN--IRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           Y     SL++ L     R+ + G         +   G       R +   +     +  I
Sbjct: 348 YNSDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKII 407


>gi|157803465|ref|YP_001492014.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia canadensis str.
           McKiel]
 gi|166224723|sp|A8EXZ6|MURC_RICCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157784728|gb|ABV73229.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia canadensis str.
           McKiel]
          Length = 477

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 146/436 (33%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH  +PQ I      +V+SSA +  +      +    PI+     R+   + A  +  K 
Sbjct: 64  GH--VPQNITN-VSYVVISSAINPDNPEIQEALERKIPII-----RRA-EMLAELMRLKC 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G+ GK++  S V  + + +GL        + I+    +NR T          
Sbjct: 115 S---VAVSGSHGKTTTTSLVACLFEAAGLC------PTVINGGIINNRSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++      +A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYKDFATLISA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +      I    +          +
Sbjct: 210 FIINLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSADAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P+PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPIPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V        I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKV-AEYNMASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQHLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            +    ADI  +TD     E+P          +KI     H    F+   +  +A+   I
Sbjct: 389 MLCFADADILYITDIYAAGENPIEGITGQSLVDKITKNKYHDQANFLATLD--DAVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     DV+++ G G+
Sbjct: 447 DNAVSGDVIIMMGAGN 462


>gi|225850494|ref|YP_002730728.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
 gi|254766015|sp|C0QPY2|MURC_PERMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225645302|gb|ACO03488.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
          Length = 459

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 153/425 (36%), Gaps = 49/425 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ +  GA+ +V SSA    +          I  +    + L+      YG    
Sbjct: 57  GHD--PKNVD-GADVVVYSSAVKQDNPELLRAKQLGIPTIPRG-EMLAELMRFKYG---- 108

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ G+ GK++  S V  I  ++G       PT  I                  K  +
Sbjct: 109 --IAIAGSHGKTTTTSMVGTILGKTGYD-----PTVVIGG----------------KLEA 145

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+  +       +           +     S  N+  +HI +++       A    F 
Sbjct: 146 YGSNAKLGSGDFIVTEADESDGSFLKLTPTIVSINNIDLEHIGFYKNLNDIKRA-FIDFA 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
             +P      +  DD   K+++        R    G      I    +   + + +  ++
Sbjct: 205 NKVPFYGAVAVNIDDQNIKDIIPEIEKKIIR---FGISEDSDIRGYDLRLENGRYRFKVN 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             G+ +     +PG+  VYNAL A  + + +G+   ++ E LE       RFE     S 
Sbjct: 262 DFGEIY---LSIPGKHNVYNALAAISISVELGVPFCVIKEALENFKNANRRFEIKYDGS- 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    ++  L   R +  G RII VF                 + ++ DI 
Sbjct: 318 -VTVIDDYAHHPTEIKATLSATREMFDGRRIIAVFQPHRYSRTFSLYDHFVRSFNIPDIT 376

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAG 466
           ++T+  P  E P      EK+ ++I       +  G +  +       +L K DVL++ G
Sbjct: 377 VITEIFPAGESPIDSVNGEKLSSDIKKETGKTVLYGEDLQKTFNILKNILKKDDVLLILG 436

Query: 467 KGHET 471
            G+ T
Sbjct: 437 AGNVT 441


>gi|304440543|ref|ZP_07400430.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371021|gb|EFM24640.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 462

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 130/412 (31%), Gaps = 41/412 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ ++ + A SL +          I +VD    FL            +  +A++GT GK
Sbjct: 70  GADLVIYTDAISLDNEELREAIKQKIDIVDRA-SFLGALMKNY-----KISMAISGTHGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S V +I +          PT  +     D          L      + ++   + +
Sbjct: 124 TSTTSMVSEIIRNL-----PERPTILLGGKLDDINGNV-----LVGNREIMLTEACEYKA 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                   N+  DH+DY    +   N   + + + L   S  I+
Sbjct: 174 NVLKYF-----------PTTAVILNIDEDHLDYFDNMEHIVNT-FKGYADNLKPGSTLIL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGK-DFDFL 303
             DD Y +E+  R       V++ G +    +  K          +  +  +G      +
Sbjct: 222 NIDDPYVRELQNR---DNTTVVTFGVENDADYTAKNIKFCEDGYPEYDLYYKGSLIGKVI 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   + N+L A        I     ++ +     V  R EF G    G +++ DYA
Sbjct: 279 LSVLGIHNIKNSLAAIACAHENNISFKDAIDGIHSYKGVHRRLEFKGMFG-GAKVFDDYA 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +   L  I+      +  +F                 +   AD  I+TD     E
Sbjct: 338 HHPTEILASLHAIKRGCERNLYCIFQPHTFTRTKILLDSFSKSFSEADYTIITDIYAARE 397

Query: 424 -DPEKIR-----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D   I        I       +      + ++   + L   D +V  G G 
Sbjct: 398 KDYGDIHSKTLVDAINQNKDKALYIETFRDIVKFLKDNLRPGDTVVTMGAGD 449


>gi|221213281|ref|ZP_03586256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
 gi|221166733|gb|EED99204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
          Length = 468

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 155/447 (34%), Gaps = 36/447 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR + AG +FVA+ G + D H F+          +    A +     A   
Sbjct: 24  VTFERVSTDSRTVGAGDLFVALKGERFDAHDFL--------ADVAARGAAAALVAQAPAG 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++V   TR  L   A     +    ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  VALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +++                  L   ++  +  + +  +  G  +           
Sbjct: 136 ATAGNLNN----------DVGLPLTLLRLTAAHRLAVIELGMNHPGETEILARLTAPTVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A       +    LP +  A+  ADDAY+     R    G R+
Sbjct: 186 LVNNAQREHQEFMATVEAVALEHAAVI-HALPPDGVAVFPADDAYASIW--RVAATGNRI 242

Query: 268 LSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L             +V    +  ++ I              GE    NAL A    +A G
Sbjct: 243 LDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAATAAALAAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           +  + + + LE    V GR +    ++    G  +  D Y    +S+   +  +    + 
Sbjct: 303 VALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP 362

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           R++V+   G   D+G    R +         D      D  R        A        F
Sbjct: 363 RVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDA-----CAAYGEAARHF 417

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + G  ++A+  A    +    ++V G
Sbjct: 418 DDVGTLVDALLAAGYGADAS--VLVKG 442


>gi|149278412|ref|ZP_01884549.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
 gi|149230782|gb|EDM36164.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
          Length = 824

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 148/393 (37%), Gaps = 29/393 (7%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I+ +  DSR +      +F A+   K DGH +IP A A G    V+S    L D  A   
Sbjct: 28  ISRLVIDSRSMIDPENSLFFALS-AKRDGHEYIPDAYAHGIRNFVISRTEFLADQKAGDY 86

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++   L+VD+  K L   A     ++   ++A+TG++GK+ V  ++ Q+           
Sbjct: 87  ADANFLLVDDVLKALQELAVFNRRQYDTPVMAITGSNGKTIVKEWLYQLLAA-------- 138

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIA 206
                 S  + ++++  P  ++       L+ +    +     S G +   L   I    
Sbjct: 139 DFNIVRSPRSFNSQIGVPLSVW------DLTEEHTLAIFEAGISKGEEMDALAAIIYPTV 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  H +   +Q+          E+L   +   +      Y++ + K+      +
Sbjct: 193 GILTNVGEAHAEGFSSQKEKLL------EKLKLFKEADVFIYSPEYTQGIPKKDLPGNTK 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   + +  +  I +K  +    +G++ + L P      V N ++     +++G
Sbjct: 247 FSWSLTESADLQISFIEPIDDKNYIRAIFKGEEIECLIPFSDRASVENGIICWATLLSMG 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN---IRTITSGR 383
                    LEKL+ V  R E     ++   I   Y+   +SL + L             
Sbjct: 307 YSPEDADSRLEKLNRVGMRLELKHGINQCSVIDDSYSADISSLAIALDFLNLQNQHPKKT 366

Query: 384 IIV--VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +I+  ++  G   ++    I   +     +  I
Sbjct: 367 LILSDLYETGRKDEELYTEIAALLKQKQINRLI 399


>gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 318

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 28/245 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R I+ G +F+A+ G   DGH F+ +A  +GA A +VS              + 
Sbjct: 27  SNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAIAAIVSEGK---------YKSF 77

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++V +T K L   AS           ++AVTG+ GK++    +  +  + G+S    G
Sbjct: 78  PLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHANEG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +              +  YL                +  +  G  +            
Sbjct: 138 NLNNNIGLPLTILKAPKNCQYLILE-------------MGMNKAGEIKELSKISNPNIAV 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   H +   +      AK+ +    +      ++  D+ Y   +   A+     V+
Sbjct: 185 ITNIEPAHTENFSSLFDVAQAKLEILYG-MKNNGTLVLSRDNKYYDYLSSHANRN---VI 240

Query: 269 SVGYQ 273
           S G  
Sbjct: 241 SFGKD 245


>gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 840

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 149/420 (35%), Gaps = 33/420 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              ++ +     +  +   I+ + +DSR +      +F AI   + +G  +IP    +G 
Sbjct: 14  IESIVEKTGARRLGNKPATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGV 73

Query: 69  EAIVVSSAY------SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              VV+S          +    T+      L+V NT K L   + +  G     ++ +TG
Sbjct: 74  RNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIGITG 133

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+ V  ++ Q+            P   I    +        P+ + + ++  S  G+
Sbjct: 134 SNGKTIVKEWLHQLLS----------PDRVIVRSPRSYNSQIGVPLSVWQ-MNEESELGI 182

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +  S  G  +   + IK   G  TN+G  H +   + Q     K+ LF++      
Sbjct: 183 FEAGI--SEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDC----D 236

Query: 243 PAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             I   D+   S  V K    A     S+    + +++ +V    +   ++      D  
Sbjct: 237 VVIYNGDNEMISNCVGKSMLTAREIAWSMKDIERPLYISRVEKREDHTVISYRYLEMDNT 296

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +    I   
Sbjct: 297 FCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNCILINDS 356

Query: 362 YAHTSNSLEMILKN--IRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           Y     SL++ L     R+ + G         +   G       R +   +     +  I
Sbjct: 357 YNSDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKII 416


>gi|300741266|ref|ZP_07071287.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
 gi|300380451|gb|EFJ77013.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
          Length = 486

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 146/435 (33%), Gaps = 46/435 (10%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSL-----FASRL 109
           I      GA       A ++ D      S  I  + P L+    +    L      A+ +
Sbjct: 58  IQALREAGARVYTPQDAANIHDIDTVVISTAIHEDNPELIAARAQNLRVLHRSEALAAAM 117

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++AV GT GKS+ +S +  +  + G        T      +      T    +
Sbjct: 118 G---SSQVVAVAGTHGKSTTSSMIAVMLDKLGFHPSFAVGTVIAGYGSNARLGATGEGSW 174

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                       V +                  +      TN+  DH+D+++T +  + A
Sbjct: 175 FVAEADESDGSFVRY------------------QPAIAVVTNVEPDHLDFYETPERVYEA 216

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNK 288
             R    + P     +   DD  ++ + +RA +AG  V++ G      + + ++ +  ++
Sbjct: 217 FNRFVASMAP-GGVLVTCWDDEGARALAERARDAGIEVVTYGQSTEADLRVSRITSHGSE 275

Query: 289 QQVTISVEGK--------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              T+    +        + D    +PG     NA  A    +  G         L    
Sbjct: 276 SSATLRWSFECASKHYEGEQDAQLRVPGIHNQLNAAAAFITALLAGAQPEDAAAALYGFG 335

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKR 399
               RF   G  + G +++ DYAH    +   L+  RT+  G  + VVF         + 
Sbjct: 336 GADRRFTLRGDVA-GIKVFDDYAHHPTEVFRALETGRTVADGHNLYVVFQPHLFSRTQEF 394

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII--HGIPGFIEKGNRIEAIRTAIEML 456
                 AL  AD + V D  P  E P E + +E+I   G        +   AI       
Sbjct: 395 AADFAQALSKADRSYVLDIYPARELPIEGVTSELITGAGFSEVHYASDAAAAIEDIAMCA 454

Query: 457 NKQDVLVVAGKGHET 471
              D+++  G G  T
Sbjct: 455 VPGDIIMTIGAGDVT 469


>gi|325663714|ref|ZP_08152118.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470207|gb|EGC73440.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 459

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 146/415 (35%), Gaps = 50/415 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           ++    +  ++A + ++ P  +     +   L  + L G+   N    +AV+GT GK++ 
Sbjct: 66  ITDDIDVVVYTAAVHADNPEFIAAKEHQIPMLTRAELLGQLMTNYKTPIAVSGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I   +G +   I     +     + R+     +++ +A  Y +S          
Sbjct: 126 TSMISHIL-LAGDTDPTISVGGILKIIGGNIRVGHSD-VFITEACEYTNSF--------- 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                    LD +    G   N+  DH+D+ +      ++  R F  LLP +   II ++
Sbjct: 175 ---------LDFL-PKIGIILNVEEDHMDFFKDLDDIRHSFHR-FAALLPNDGTLIINSE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---KDFDFLFPL 306
            +  ++++       C V++ G      +  +     N   V+  +     K       +
Sbjct: 224 ISQYEQIIA---GLNCNVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE  V NAL A      +GID   + + L        RFE+ GT   G  I  DYAH  
Sbjct: 281 NGEHNVSNALSAIITGTLLGIDLEKIKKGLLSFTGTDRRFEYKGT-LDGVTIIDDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
             +E  L   +      I  +F                 AL LAD  I+ D     E   
Sbjct: 340 TEIEATLSAAQHYPHREIWCIFQPHTYTRTKAFFHEFAQALTLADHVILADIYAARETDT 399

Query: 426 -----EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E +   I            F E  N ++     I      D+L+  G G 
Sbjct: 400 LGMSSEALSDAIRELGGDSCYFSSFDEIKNFVK--EKCIH----GDMLITMGAGD 448


>gi|269795578|ref|YP_003315033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097763|gb|ACZ22199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 464

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 95/486 (19%), Positives = 160/486 (32%), Gaps = 66/486 (13%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + DL   +  +L       P   R   ++  +  DSR + AG +FVA+VG   DGH    
Sbjct: 1   MIDLTAAEVADLTGGTLAAPHTTR---VHGPTVVDSRKVSAGALFVALVGESSDGHDHAA 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENI 117
            A+A GA  ++ S                P +VVD+  + L L A+    +     P  +
Sbjct: 58  GAVADGAALVLASRELD----------GLPCVVVDDVTRALGLVAAEHLRRLRASGPLQV 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AVTG+ GK++    +  +   SG +       +             P   YL       
Sbjct: 108 AAVTGSVGKTTTKDLLGHVLSESGPTVMPRASFNNEIGLPLTVLEAGPETRYL------- 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + + AS+ G   +              +G  H+           AK  +   L
Sbjct: 161 ------VLEMGASAPGDLTYLTGIAPPDVSIVLAVGAAHLGGFGGLDGVARAKSEIVTGL 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISV 295
            P E  A++ ADD     V+     A  RV++ G            ++    +V+  + V
Sbjct: 215 RP-EGVAVLNADDH---RVVAMRDLAPSRVVTFGTVRDAGVRAHRVSVDRLGRVSCQVVV 270

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +  D    L GE  + NAL A    + +G+D       +  +         V     G
Sbjct: 271 GERTADLSLRLVGEHHLTNALAALTAAVELGVDLDTAAALVSSVDAASPHRMAVTERPDG 330

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADI 412
             +  D Y    +S+   LK +  +       + V G   +     R    +I   +  +
Sbjct: 331 VTVIDDSYNANPDSMRAALKALAVVAGRDRRSVAVLGEMLELGPDSRDQHDEIGRLVVRL 390

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--------------EAIRTAIEMLNK 458
            I            K+   +  G  G  +   +                A R   E L  
Sbjct: 391 NI------------KLLVVVGAGASGLADGATQEGSWGEEVVEVEDVPAAERFLAEELRS 438

Query: 459 QDVLVV 464
            DV++V
Sbjct: 439 GDVVLV 444


>gi|294676377|ref|YP_003576992.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
 gi|294475197|gb|ADE84585.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
          Length = 468

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 132/414 (31%), Gaps = 42/414 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V+SSA    +          + VV        L   R       + +A+ GT GK+
Sbjct: 70  AAVVVISSAIKPGNPELEEARRRHLPVVRRAEMLAELMRLR-------SNIAIAGTHGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  +  + G     I     I ++  + R      +                  V
Sbjct: 123 TTTTMVATLLDKGGFDPTVING-GIIHAYGSNARAGAGEWM-----------------VV 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA       +RL          TN+  +H+++  T +         F   +P    A+  
Sbjct: 165 EADESDGSFNRLPAT---IAIVTNIDPEHMEHWGTIENLRKG-FYDFVSGIPFYGLAVCC 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFD-FLFP 305
            D    + ++ +  +          Q     +  +     N   + +  EG   +    P
Sbjct: 221 TDHPEVQALVGKITDRRVVTFGFNAQADVRAVNLRFEGGRNCFDIQLQAEGAVIEGCTLP 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL A  +   +G+    + + L     V  RF  VG    G  +  DY H 
Sbjct: 281 MPGNHNVSNALAAVAVARHLGMKKDEIRDALANFAGVNRRFTKVGEVLGGVTVIDDYGHH 340

Query: 366 SNSLEMILKNIRT----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              +  +LK  R         R+I                      + AD+  + D    
Sbjct: 341 PVEIAAVLKAARQAVSATPGARVIAAHQPHRYTRLQNLFDDFCTCFNEADVVAIADVYAA 400

Query: 422 SED--PEKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
            E+  P   R +++ G+     +  R     E +   + E     D++V  G G
Sbjct: 401 GEEPIPGASRDDLVSGLIRHGHRHARALLNEEDLARLVKEQARPGDIVVCLGAG 454


>gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 7894]
 gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 112]
          Length = 289

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 108/304 (35%), Gaps = 23/304 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EFQV 312
           E   
Sbjct: 285 EHNA 288


>gi|328955358|ref|YP_004372691.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
 gi|328455682|gb|AEB06876.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
          Length = 473

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 149/434 (34%), Gaps = 49/434 (11%)

Query: 58  LFIPQAIAQGAEA-------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
            +I Q +  G          ++  +   +   S  I    P LV            +++ 
Sbjct: 49  RYIRQLLRAGVSVHVGHDASLIDEAEPDVVVVSTAIPETNPELVRARELGIPVWPRAKML 108

Query: 111 GK--HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSP 167
               H    +AV GT GK++ AS    +  R G   SF IG    +  +  + R  +   
Sbjct: 109 AALGHGCTTIAVAGTHGKTTTASMCATMLDRMGLDPSFLIG--GIVEGYKTNGRNGSG-- 164

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                          T+   EA         L+         TN+  DH+D++ +     
Sbjct: 165 ---------------TYFVAEADESDSSFLYLE---PRVVVVTNVEADHLDHYGSLAEIE 206

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           N   + F  L+ ++   +   DD   K++ + A +   R+++ G+  +   + +VC    
Sbjct: 207 NTFAQ-FMSLVGEQGVIVACGDD---KQLYELARSTSKRIVTYGFDARNDIVCEVCDDRC 262

Query: 288 KQQVTISV---EGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            Q     +   +G+  +      PG   + NA  A G+  A+G+D+A     L     V 
Sbjct: 263 AQASGCRIRFPDGRLHEVDIAHNPGRHNMLNASAAMGVAFALGLDTAAAARALSTFEGVR 322

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RF  VG +  G  +  DY H    ++  L   R +    I VVF               
Sbjct: 323 RRFTRVG-DVCGVTVVDDYGHHPTEIKATLAAARGLDYRHIDVVFQPHRYSRLKAFLDDF 381

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEM 455
             A   AD  ++ D     E P      + +   +    P        +R+  +     +
Sbjct: 382 ADAFADADKVVLIDVFSAGEMPIPGVTSKALADTVRARHPDKQVSYVSDRMALMERLETI 441

Query: 456 LNKQDVLVVAGKGH 469
               D+L+  G G 
Sbjct: 442 TEPGDLLITMGAGD 455


>gi|260426600|ref|ZP_05780579.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
 gi|260421092|gb|EEX14343.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
          Length = 475

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 139/415 (33%), Gaps = 49/415 (11%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE +V+SSA      +     R   P++        L            ++ +AV GT G
Sbjct: 81  AEVVVISSAIKPGNPELDEARRRGLPVVRRAEMLAELMRL---------KSNVAVAGTHG 131

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  +   +G     +     I ++  + R+     +                 
Sbjct: 132 KTTTTTMVATLLD-AGQLDPTVINGGIIHAYGSNARVGLGEWM----------------- 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++  + +   +   + F   +P    A+
Sbjct: 174 VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGSIENLRDGFYQ-FVSNIPFYGLAV 229

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--- 302
              D A  + ++ R  +          Q   +    +          I ++ +D      
Sbjct: 230 CCTDHAEVQALVGRVTDRRVTTYGFNAQAD-VRAVNLRYEKGIAHFDILLQAEDMKIEGC 288

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I  DY
Sbjct: 289 TLPMPGDHNVSNALAAVAVARHLGMKREEIRLALAAFGGVNRRFTRVG-EVNGVTIIDDY 347

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  T GR+I V                    + AD+  + +     
Sbjct: 348 GHHPVEIAAVLKAARQATEGRVIAVHQPHRYSRLHSLFDDFCACFNEADVVAIAEVYAAG 407

Query: 423 EDP--EKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
           E P     R +++ G+     +  R  AI       R   E     D++V  G G
Sbjct: 408 EAPIEGATRDDLVAGLIRHGHRHAR--AILNEDDLERLVREQARPGDMVVCLGAG 460


>gi|229270471|ref|YP_975688.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           FAM18]
 gi|229597116|ref|YP_001599824.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           053442]
 gi|189029221|sp|A9M2H2|MURC_NEIM0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325198895|gb|ADY94351.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           G2136]
 gi|325202766|gb|ADY98220.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240149]
          Length = 468

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 63  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 116 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 157

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 158 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 214 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 271 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 330

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 331 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 390

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 391 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 448

Query: 465 AGKG 468
            G G
Sbjct: 449 MGAG 452


>gi|110833460|ref|YP_692319.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
 gi|123345752|sp|Q0VS01|MURC_ALCBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110646571|emb|CAL16047.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
          Length = 474

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 150/434 (34%), Gaps = 51/434 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G + D GH    + I  GA+ +V S+A + ++          I VV   +  L+      
Sbjct: 61  GVRVDIGHR--AENID-GADVVVTSTAVNTENLEVAAAHERRIPVVPRAQM-LAELMRFR 116

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +G      +AV GT GK++  S    I   +GL      PT  I                
Sbjct: 117 HG------IAVAGTHGKTTTTSLTAAIMAEAGLD-----PTFVIGGRLNSAGTNARLGQS 165

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               ++       + +                ++ ++   TN+  DH+  +    A    
Sbjct: 166 RY-LVAEADESDASFL---------------HLQPMSAIVTNVDADHMHTYGGDFAQLEN 209

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
               F   LP    A++  DD   ++++ R +    +V+  G+ +   +  + V      
Sbjct: 210 TFIEFLHNLPFYGVAVMCVDDPVVRKLLPRVNR---QVIRYGFSEDADLRAENVRQDGMV 266

Query: 289 QQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                +  EG+  D    +PG   V NAL A  +    G     ++  L     V  RF+
Sbjct: 267 THFRVVRAEGEPLDVSLNMPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNFTGVGRRFD 326

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMG 403
             G     G    +  DY H    +   +  IR    G R+ ++F               
Sbjct: 327 VQGDYHFDGGSATLVDDYGHHPREVAATIDAIREGWPGRRLAMLFQPHRYTRTQDLYEDF 386

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GI-PGFIEKGNRIEAIRTAIEM 455
              L   D+ ++ +     E+P        +   +   G+ P F++  ++++ +      
Sbjct: 387 VEVLSGVDVLLMLEVYAAGEEPIPGADARALCRSLRKRGLEPVFVDDPDKLQGLLA--SQ 444

Query: 456 LNKQDVLVVAGKGH 469
           L   D+LV  G G+
Sbjct: 445 LQNGDLLVTQGAGN 458


>gi|316984933|gb|EFV63889.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 506

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 153

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 154 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 195

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 196 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 252 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 309 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 429 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 486

Query: 465 AGKG 468
            G G
Sbjct: 487 MGAG 490


>gi|302206518|gb|ADL10860.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|308276760|gb|ADO26659.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 485

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 104/467 (22%), Positives = 164/467 (35%), Gaps = 71/467 (15%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           DSR +      +A+   G     GH     A      +I       +    A I  + P 
Sbjct: 44  DSRAV------LALRSMGAHVAVGH-----AAEN--LSIAGEKPTVVVTSFAAIPQDNPE 90

Query: 93  LVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGP 149
           LV         +  S L G+       + + GT GK+S  S      Q +G+   F IG 
Sbjct: 91  LVAARELGIPVIRRSDLLGELMEGSTQVLIAGTHGKTSTTSMAVVAMQAAGMDPSFAIG- 149

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                               L KA +            EA        R    K      
Sbjct: 150 ------------------GQLNKAGTNAHQGTGDAFVAEADESDASLLRY---KPNIAVI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+ ++++AYF    +  + L+P  S   +  DD ++  + ++ H     +  
Sbjct: 189 TNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVSLV-VCLDDPHTAMLGQKIHEKHKDIKV 247

Query: 270 VGY-----QGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           VGY       ++  + K         H+    TI V G++ + +   PG   V NA  A 
Sbjct: 248 VGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAAAAL 307

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR----GGRIYVDYAHTSNSLEMILKN 375
              +  G D   +   +     V  RFE+ G  +     G  +Y DYAH    +  +L  
Sbjct: 308 TAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAVLTA 367

Query: 376 IR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK---- 427
            R        GR++V+F                 AL LAD AIV D     E P +    
Sbjct: 368 ARAKLQARGQGRLLVIFQPHLYSRTINFVDEFAAALSLADEAIVLDIYGAREKPVEGVDS 427

Query: 428 -IRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            I  + +  IP   E    +  EA+    ++    D+++  G G  T
Sbjct: 428 RIITDKMT-IPAHFEPDFSHVPEAVA---DLAAPGDLVITMGAGSVT 470


>gi|261405378|ref|YP_003241619.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261281841|gb|ACX63812.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 458

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/427 (19%), Positives = 146/427 (34%), Gaps = 52/427 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q   QGA+ +V S+A S  +          I V         + A  L  +   
Sbjct: 55  GHT-AEQV--QGADLVVYSTALSKDNVERVEAEKLNIPV----LHRAQMLARLLNER--- 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV G  GK++ +S +  + +  G     + PT  I     +      +         
Sbjct: 105 KGVAVAGAHGKTTTSSMIALVMEECG-----VDPTFIIGGEIMNVGTNAKAGEG------ 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + V   + E+    L  H         G   N+  DH++ ++       A    F 
Sbjct: 154 ----EHVVAEADESDGSFLQYH------PWLGVVLNIEADHLENYEGDFNRLKAAYVQFL 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTIS 294
             +  +  A++ ADD   + ++    +  C V + G      +    +         T+ 
Sbjct: 204 SQIKADGTAVVCADDNNIQAIL---PDLKCNVTTYGIHADAEYTATNLVLGDRHVSFTML 260

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G +       +PG+  VYNA+     C+  GI    ++E + K +    RF+ +G  +
Sbjct: 261 HNGMELGTVELSVPGKHNVYNAMATVICCLKSGISFGAIVEAIVKFNGAKRRFQVLG-EA 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  +  DYAH    +E  +   +  T  RII VF                 A   AD  
Sbjct: 320 EGILVIDDYAHHPTEIEATISAAKA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFGEADEV 378

Query: 414 IVTDDN-PRSED----------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           I+TD   P  E            E I      G      K + +  ++     + + D++
Sbjct: 379 IITDIYSPAGEKQIEGISSGKLVELIVQNSNAGARYLPTKEDVLSDLK---GRVKEGDLV 435

Query: 463 VVAGKGH 469
           +  G G 
Sbjct: 436 LTMGAGD 442


>gi|240017226|ref|ZP_04723766.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           FA6140]
          Length = 506

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 101 NGADVVVASTAVKKENPEVVAALERQIPVIPRALM-LAELMRFRDG------IAIAGTHG 153

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 154 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 195

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 196 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 251

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 252 FLCVDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 308

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 309 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 368

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPDKRLVLAFQPHRYTRTRDLFEDFTKILNTVDAL 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  + A     +   I    ++E I         +  + +L   DV++ 
Sbjct: 429 VLTEVYAAGEEP--VAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVLN 486

Query: 465 AGKG 468
            G G
Sbjct: 487 MGAG 490


>gi|189029013|sp|A1KVL2|MURC_NEIMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120867149|emb|CAM10916.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis FAM18]
 gi|254671167|emb|CBA08261.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha153]
 gi|261391937|emb|CAX49399.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis 8013]
 gi|317164855|gb|ADV08396.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           TCDC-NG08107]
 gi|325134890|gb|EGC57523.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M13399]
 gi|325138957|gb|EGC61507.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           ES14902]
 gi|325142977|gb|EGC65334.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           961-5945]
 gi|325208762|gb|ADZ04214.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           NZ-05/33]
          Length = 469

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           8013]
          Length = 445

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 163/418 (38%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ +DD + + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIG--KKNGVVFIDDSKGTN-VGATAAAITGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++ A       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|283458376|ref|YP_003363000.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
 gi|283134415|dbj|BAI65180.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
          Length = 499

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 96/429 (22%), Positives = 160/429 (37%), Gaps = 45/429 (10%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFA----SRLYGKHPE 115
           A GA   V   A ++ D      S  IR + P LV    +    L      + + G+   
Sbjct: 71  AAGARVGVPQQAENIVDVDTVVISTAIREDNPELVAARAQGLRVLHRSEALAAVMGE--S 128

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            ++AV GT GKS+ +S +  +  + G   SF +G                P  I++A+A 
Sbjct: 129 QVVAVAGTHGKSTTSSMISVMFDQLGAQPSFAVGTVIAGRGMNAHLGAQGPGSIFVAEA- 187

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                        + S     ++R           TN+  DH+D+++T +  F A  R F
Sbjct: 188 -------------DESDGSFVRYR-----PAIAVVTNVEPDHLDFYETDERVFEAFNR-F 228

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQ 289
              L      +  ADDA + ++  R+  AG  V++ G                 +  +  
Sbjct: 229 VGSLAPNGVVVTCADDAGAADLAARSRAAGVPVVTYGESADADLRISEITSAGSSSSSHL 288

Query: 290 QVTISVEG----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +    G     + D    +PG     NA  A    +  G ++A +   L +      R
Sbjct: 289 SWSFECHGVRYEGEQDLALKVPGIHNQLNASAAFASALISGYEAADIARALAEFVGADRR 348

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGK 404
           F   G  + G +++ DYAH    +   L+  RT+  G  + V+F         +      
Sbjct: 349 FTLRGEVA-GVKVFDDYAHHPTEVFRALETGRTVADGHNLYVIFQPHLFSRTREFAKEFA 407

Query: 405 IALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
            AL +AD A V D  P  E P E + +E+I G     +      +AI   +      D++
Sbjct: 408 QALSMADRAHVLDIYPARELPIEGVTSELITGAGFSEVRYATAEDAIEDIVTCAQDGDIV 467

Query: 463 VVAGKGHET 471
           +  G G  T
Sbjct: 468 MTVGAGDVT 476


>gi|308235256|ref|ZP_07665993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 570

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 102/507 (20%), Positives = 187/507 (36%), Gaps = 84/507 (16%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N ++ DSR I+   +   I GN +    ++  A   G    V   +Y+  D++  +    
Sbjct: 78  NHITYDSRDIKKNTLLF-IKGNFKP--EYLKDADKNGLTTYVAEQSYA--DYTNAVG--- 129

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L+V + RK +SL +S  +G   E +  + +TGT GK++ A F   I          + 
Sbjct: 130 --LIVTDVRKAMSLLSSEFFGNPQERLRVIGITGTKGKTTTAYFTHAILNEHSEGKAALF 187

Query: 149 P---TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                        ++ LTTP  +   + +S     G+ ++ +E SS      R+ G+   
Sbjct: 188 SSVDNCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEVSSQAYKVERVYGLHFN 247

Query: 206 AGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             +F N+  DHI    H T + Y   K ++ +         I+ AD A++  +++ A N 
Sbjct: 248 VAAFLNISPDHISPIEHPTFEDYLYCKRQIVKN----TDALILNADCAHADLILQDAQNE 303

Query: 264 GCRVLSVGY-----QGKFIHLKKVCAIHNKQQ------------------VTISVEGKDF 300
              V +         G+ I   + C+ H+                     + +S + ++ 
Sbjct: 304 YVDVTTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKYVAMPVSSDAQEH 363

Query: 301 D------------------------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                                    F   + G+F   NA  A  +  A+GI+     + L
Sbjct: 364 YVAILDNESKKNKKQFVPNYTTIDKFNLKIAGDFNYENATAAIAIANALGINENTDQKAL 423

Query: 337 EKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCG 391
             +  V    R E            VDYAH   S + ++  +          I +V G  
Sbjct: 424 HAIENVQISGRMEVFKDTKSNTVAIVDYAHNYISTKSVVDFVYDKYGNNDLRITLVTGST 483

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIE 447
           GD+   +R  + + A D  +  + T ++   ED   I   +   +     +     NR E
Sbjct: 484 GDKAVDRRKEIVQAAQDRINQFVFTQEDTNVEDEMDICKYMQSCVTNPNVESRIIINRAE 543

Query: 448 AIRTAIEMLNKQ-------DVLVVAGK 467
           AI  ++E   K        ++++  GK
Sbjct: 544 AIEYSVEEARKDARENNRLNIILAIGK 570


>gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 825

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 148/386 (38%), Gaps = 26/386 (6%)

Query: 35  SDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +DSR +      +F AI     DG  ++     +G    VV+    + +  A +  N+  
Sbjct: 29  TDSRSLCFAEETLFFAIKTMSNDGSKYLSDLYKRGVRNFVVN---EVPENYAVLYPNSNF 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V NT   L   A R   +    ++ +TG++GK+ V  ++ Q+   S           T
Sbjct: 86  LKVSNTLDALQRLAERHRDEFAIPVIGITGSNGKTMVKEWIYQLLSPS--------LIVT 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            S  + +++   P  ++L   L+  +  GV    +  S  G      D I+   G  T +
Sbjct: 138 RSPRSYNSQTGVPLSVWL---LTNNTQLGVFEAGI--SEPGEMDSLRDIIQPTIGILTTI 192

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VLSVG 271
           G  H +   + +   N K++LF +        I   D+   K  +++    G R  LS  
Sbjct: 193 GDAHQENFTSLEEKCNEKLKLFTD----SKLLIYNEDNTLVKRCVEQFSFEGQRFSLSRQ 248

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +   +++ KV   +    +  S +G +  +  P   E  + N++    + + +GID   
Sbjct: 249 NEKSTLYVSKVLKNNADSVIYYSYKGVEGSYKIPFIDEASIENSIECLAIGLYLGIDKNA 308

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVF 388
           + E +  L  V  R E          I   Y    NSL++ L  +         + I++ 
Sbjct: 309 IEERMASLEPVAMRLEVKEGRHDCTLINDSYNSDINSLDIALDFMSRRPDAKERQRILIL 368

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAI 414
                  +    +  +++  +   ++
Sbjct: 369 SDIYQTGKPLSQLYSEVSALMKQRSV 394


>gi|168210142|ref|ZP_02635767.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170711753|gb|EDT23935.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 874

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 168/406 (41%), Gaps = 31/406 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G   F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIG---FNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI- 217
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 218 -DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVKS-LVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 --IHLKKVCAIHNKQQVTISVEGK----------DFDFLFPLPGEFQVYNALVAAGLCIA 324
              +LK+   I   +  TI V+ +          +  F      +  + NA+ A    + 
Sbjct: 637 LQENLKQGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +   
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLK 756

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI----- 436
            I  + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+     
Sbjct: 757 NITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNR 816

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                    +  EA+R  +++  K + +++  + +E+++ + N  K
Sbjct: 817 KDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFK 862


>gi|289166080|ref|YP_003456218.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
 gi|288859253|emb|CBJ13187.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
          Length = 469

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 136/418 (32%), Gaps = 49/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+      L+      +G      +AV GT G
Sbjct: 73  KGADVVVRSSAVEWNNPEIVAAREQMIPVIPRA-AMLAELMRFRHG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   SF IG                   + +   L       V  
Sbjct: 126 KTTTTSLVSSVLAEGGLDPSFVIGGKLN--------------SLGINAQLGQSPYFVVEA 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              +AS           +K +    TN+  DH+  ++            F   LP    A
Sbjct: 172 DESDAS--------FLFLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPFYGSA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE--GKDFD 301
           ++  DD   ++++          L+ G+ +                + T+          
Sbjct: 224 VVCIDDPEVRKILPFIERP---TLTYGFTEEAHYRAIDWTQNELISEFTVIRPKSYSPLK 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRI 358
             F  PG   V NAL +  +   +G+D   ++  LEK   V  RF+ +G          +
Sbjct: 281 IQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEKGSALV 340

Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    +   +   R +  + R++ VF         +        L LAD   + D
Sbjct: 341 VDDYGHHPQEILSTIDAFRHVWPNKRLVHVFQPHRYTRTQELQEQFVDVLSLADELFLFD 400

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
                E        E +  +I +          R   ++  ++    + DV+++ G G
Sbjct: 401 IYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERS--LKKNLDQSVKEGDVILIQGAG 456


>gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei B7210]
          Length = 297

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 108/303 (35%), Gaps = 23/303 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EFQ 311
           E  
Sbjct: 285 EHN 287


>gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 9]
          Length = 298

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 108/303 (35%), Gaps = 23/303 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EFQ 311
           E  
Sbjct: 285 EHN 287


>gi|238021216|ref|ZP_04601642.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
 gi|237868196|gb|EEP69202.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
          Length = 472

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE +V S+A      +  A I  + P++     R  +   A  +  +     +A+ GT 
Sbjct: 64  GAEVVVASTAIKQDNPEIQAAIARHIPVI----PRAMM--LAEIMRFR---ESIAIAGTH 114

Query: 125 GKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S    I   +G   +F IG   T +         T         ++       +
Sbjct: 115 GKTTTTSLTASILGAAGLDPTFIIGGKLTAAGTNAKLGKGT-------WMVAEADESDAS 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +                +  +    TN+  DH+D +             F   +P    
Sbjct: 168 FLY---------------LSPVFTVITNIDEDHMDTYNHDADKLRQAFIDFVHRMPFYGK 212

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---- 299
           A +  D A  + ++ +         ++  +   +    V     + Q T++ +  D    
Sbjct: 213 AFLCIDSANVRAILPKIQKPFA-TYAIDDETADLWASNVRTHDAQMQFTVNRKHADNSVQ 271

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSR 354
            FD      G   V NAL + G+ +        + + L     V  RF+  G        
Sbjct: 272 TFDVTLNCAGRHNVLNALASIGVALECKAPVEAIQQGLATFGGVGRRFQSYGEINLPQGG 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    ++  L   R    + R+++ F                  L+  D  
Sbjct: 332 KALVIDDYGHHPVEMQATLSAARGAFPNNRLVLAFQPHRYTRTRDLFEDFVTILNSVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLV 463
           ++TD     E+P  I A     +   +    ++E I  A            +L   DV++
Sbjct: 392 VLTDVYAAGEEP--IVAADSRALTRAVRVHGKLEPIYCADVNAVPETLLHNVLQDGDVVL 449

Query: 464 VAGKG 468
             G G
Sbjct: 450 TMGAG 454


>gi|330888571|gb|EGH21232.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 486

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 140/419 (33%), Gaps = 50/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG     +        +          ++       + +
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ + G  TN+  DH+  ++            F   LP    A+
Sbjct: 181 ---------------HLQPLVGVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   +E++ +        L+ G+ +   I    V         T+    ++  D  
Sbjct: 226 MCIDDPVVREILPQVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             +PG   V N+L    +    G+    +++ L     V  RF+    +        +  
Sbjct: 283 VNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +  ++  +R      R+++V                   L  A++ ++ +  
Sbjct: 343 DYGHHPREVAAVISAVRGGWPDRRLVMVSQPHRFSRTRDLYDDFVQVLADANVLLLMEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKGH 469
           P  E+P  I       +   I +  +++   I   +E+           D+L+  G G 
Sbjct: 403 PAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQGAGD 459


>gi|83953981|ref|ZP_00962702.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83841926|gb|EAP81095.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. NAS-14.1]
          Length = 471

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 136/413 (32%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+SSA      +  A   +  PI+        L            ++ +AV GT 
Sbjct: 70  GAAVVVISSAIKPGNPELDAARVAGLPIVRRAEMLAELMRL---------KSNIAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V ++  + G+    +     I ++  + R+     +                
Sbjct: 121 GKTTTTTMVAELLVKGGIDPTVVNG-GIIHAYGSNARMGQGEWM---------------- 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VEA       +RL          TN+  +H+++              F   +P    A
Sbjct: 164 -VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGDFDTLRKG-FLDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDF-DF 302
           +   D    + ++ +  +          Q     +     A      +    EG    D 
Sbjct: 219 VCCIDHPEVQALVGKITDRRVMTYGFNTQADVRAVNLHYKAGVAHFDIMFQTEGITIKDC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NA+ A  +   +G+ +  +   L     V  RF  VG    G  I  DY
Sbjct: 279 SLPMPGDHNVSNAMAAVAVSRHLGMKTEEIRAALAGFGGVNRRFTKVG-EVDGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  T GR+I V                    + AD+  + +     
Sbjct: 338 GHHPVEITAVLKAARQATEGRVIAVHQPHRYSRLHHHFEEFCACFNDADVVGIAEVYAAG 397

Query: 423 EDP--EKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468
           E P     R +++ G+     +  R      +  R   E     D++V  G G
Sbjct: 398 EAPIEGAGRDDLVAGLIRHGHRHARAVQSEDDLARLVREQAGPGDMVVCLGAG 450


>gi|300858813|ref|YP_003783796.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686267|gb|ADK29189.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331073|gb|ADL21267.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 485

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 104/468 (22%), Positives = 165/468 (35%), Gaps = 73/468 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA----IVVSSAYSLQDFSATIRSNTP 91
           DSR +      +A+         F+   +A G  A    I       +    A I  + P
Sbjct: 44  DSRAV------LALR--------FMGAHVAVGHAAENLSIAGEKPTVVVTSFAAIPQDNP 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIG 148
            LV         +  S L G+       + + GT GK+S  S      Q +G+   F IG
Sbjct: 90  ELVAARELGIPVIRRSDLLGELMEGSTQVLIAGTHGKTSTTSMAVVAMQAAGMDPSFAIG 149

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                                L KA +            EA        R    K     
Sbjct: 150 -------------------GQLNKAGTNAHQGTGDAFVAEADESDASLLRY---KPNIAV 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D+ ++++AYF    +  + L+P  S   +  DD ++  + ++ H     + 
Sbjct: 188 ITNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVSLV-VCLDDPHTAMLGQKIHEKHKDIK 246

Query: 269 SVGY-----QGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            VGY       ++  + K         H+    TI V G++ + +   PG   V NA  A
Sbjct: 247 VVGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAAAA 306

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR----GGRIYVDYAHTSNSLEMILK 374
               +  G D   +   +     V  RFE+ G  +     G  +Y DYAH    +  +L 
Sbjct: 307 LTAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAVLT 366

Query: 375 NIR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--- 427
             R        GR++V+F                 AL LAD AIV D     E P +   
Sbjct: 367 AARAKLQARGQGRLLVIFQPHLYSRTINFVDEFAAALSLADEAIVLDIYGAREKPVEGVD 426

Query: 428 --IRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             I  + +  IP   E    +  EA+    ++    D+++  G G  T
Sbjct: 427 SRIITDKMT-IPAHFEPDFSHVPEAVA---DLAAPGDLVITMGAGSVT 470


>gi|134294643|ref|YP_001118378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
 gi|134137800|gb|ABO53543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
          Length = 468

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/405 (19%), Positives = 144/405 (35%), Gaps = 33/405 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR    G +FVA+ G + D H F+            V++  +     A + 
Sbjct: 24  TTFERVSTDSRTAGPGDLFVALKGERFDAHDFLGD----------VAARGAAAALVAHVP 73

Query: 88  SNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I   +  +  
Sbjct: 74  AGLAMPVVEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASIFAAAVGADA 133

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
           ++     +++            I +   L  LS+     V     +H  +   L  +   
Sbjct: 134 RLATAGNLNN-----------DIGVPLTLLRLSAAHRLAVIELGMNHPGETDVLARLAAP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N  R+H ++  T +A       +   L P +  A+  ADDAY+      A    
Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALAP-DGVAVFPADDAYAGIWRVAATGNR 241

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               ++ +  +     +V    +  ++ I              GE    NAL A    +A
Sbjct: 242 ILDFAL-HDAQRQVGAQVTGRLHGGELAIDTPSGALTVRLRALGEHNARNALAATAAALA 300

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTIT 380
            G++ A +   LE    V GR +    +     G  +  D Y    +S+   +  +    
Sbjct: 301 AGVELAAIGRGLEAFEPVKGRLQVRRADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQA 360

Query: 381 SGRIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRS 422
           + R++V+   G   D+G    R I         D      D  R 
Sbjct: 361 APRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|114331393|ref|YP_747615.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
 gi|114308407|gb|ABI59650.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
          Length = 862

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 143/377 (37%), Gaps = 35/377 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTGT+GK++ A  +  I +    +  ++G   T   F  +  + T        A +
Sbjct: 470 PVIAVTGTNGKTTTARLIANILE---HNRMRVGIACTDGVFVNNQCVDTGDCSGPKSARN 526

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YHQTQQAYFNAKMR 232
            L    V    +E +  G+ +  L          TN+GR DH+      T +     K  
Sbjct: 527 ILFHPDVDAAVLETARGGILREGLGFDYCDVAVVTNIGRGDHLGLANINTAEELAAVKRT 586

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---- 288
           + E + P++  A++ ADD     V+  A +    V       +   + +      +    
Sbjct: 587 IVENVNPEKGVAVLNADDPL---VLGMASHCPGSVTFFSCNSRHPVILEQRIQGKRVIYL 643

Query: 289 --QQVTISVEGKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
             Q + ++  G +                 FQ+ N + A G  +A G+D +++   L   
Sbjct: 644 EEQHIVVTEAGTERRISLSNIQLTKNGMISFQIENVMAAIGAGLASGLDWSIICAGLADF 703

Query: 340 ----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
                 VPGRF     N R   +  DY H  +++E ++  I  I + +  VV    GDR 
Sbjct: 704 VSDAQTVPGRFNLF--NYREATLIADYGHNPDAMEALICAIDHIPAKKRTVVISAAGDRR 761

Query: 396 QGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFI------EKGNRIEA 448
                +  +I  D+ D  ++  D   R     ++   +  G+          E     +A
Sbjct: 762 NEDIRLQTQILGDVFDEVVLFQDKCQRGRADGEVLGLLREGLENAKRVRKVSEIRGEFKA 821

Query: 449 IRTAIEMLNKQDVLVVA 465
           I TA+  L   ++ ++ 
Sbjct: 822 IDTALTNLEAGELCLIL 838


>gi|169344245|ref|ZP_02865227.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495]
 gi|169297704|gb|EDS79804.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495]
          Length = 874

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 163/389 (41%), Gaps = 29/389 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +++VTGT+GK++    +  +    G   F +G T+T      +  +          A S
Sbjct: 479 PVISVTGTNGKTTTVRLISYVLNLIG---FNVGCTTTSGVKIGNRYIHKGDDTGYNSARS 535

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L +  V    +E++  GL +  L       G  TN+  DH+  D     +     K  L
Sbjct: 536 VLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKS-L 594

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQV 291
             E +     ++I ADD +S +V+ R       + S+    K+   +LK+   I   +  
Sbjct: 595 VGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKYLQENLKQGNPIVFYRDE 653

Query: 292 TISVEGK----------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           TI V+ +          +  F      +  + NA+ A    + I +D  ++ + L++   
Sbjct: 654 TIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLKQFKS 713

Query: 342 V--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
                R  F   +  G  + +DY H  +  ++++ +++ +    I  + G  GDRD    
Sbjct: 714 CEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLKNITGIIGVPGDRDLNTM 773

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRT 451
             +G+I+ D  D  ++ +D + R +D  ++ + I  G+              +  EA+R 
Sbjct: 774 KEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKDLNVKIILSEEEALRE 833

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
            +++  K + +++  + +E+++ + N  K
Sbjct: 834 TLKLAKKGETIIMFFEDYESLYDIINEFK 862


>gi|154483291|ref|ZP_02025739.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
 gi|149735801|gb|EDM51687.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
          Length = 460

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 150/422 (35%), Gaps = 51/422 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGT 123
           G +A  V++   +  ++A ++++ P LV         L  +   G+  +N    + V+GT
Sbjct: 60  GQKASNVAADTEVLIYTAAVKADNPELVAATEMNIPLLTRAEFLGQIMKNYHTAIGVSGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S + QI   +      +     I      N     S   + +A  Y +S    
Sbjct: 120 HGKTTTTSMLSQIMLEANTDPTIL--VGGIMPAINGNTRIGHSDNMITEACEYTNSF--- 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                                  G   N+  DH+D+ +      ++  R + EL+P+   
Sbjct: 175 ----------------LSFAPTIGIILNVAADHLDFFKDLDDIRHS-FRRYAELIPEGGA 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKD- 299
            +I +D        +      C V++VG   +   +           +    + V G+  
Sbjct: 218 LVINSDIDNLDYFTE---GLKCNVITVGSDPEKSMYSAANITYDEFARGSYDLVVNGETK 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              +  + GE  +YN+L +      +GID   ++  L++      RF++ G       + 
Sbjct: 275 THIVLKVTGEHNIYNSLASIAAAHFMGIDDNSIIAGLQQYGGTDRRFQYKGKLGD-ITVI 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAH  + +   +K  +     ++ VVF                 AL  AD  ++ D  
Sbjct: 334 DDYAHHPDEIRATIKTAKHYPHKKMWVVFQPHTYTRTKALLPEFCKALSEADAVVLADIY 393

Query: 420 PRSE-DPEKI-RAEIIHGI----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              E D   I   +++ GI          P F E  N        +E  +  D+L+  G 
Sbjct: 394 AAREKDTLGISSKDVMKGIKKLGTEAYYFPSFSEIEN------FLLENCSTGDLLITMGA 447

Query: 468 GH 469
           G 
Sbjct: 448 GD 449


>gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis N1568]
          Length = 445

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 163/418 (38%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ +DD + + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++ A       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|168213683|ref|ZP_02639308.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969]
 gi|170714862|gb|EDT27044.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969]
          Length = 874

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 167/406 (41%), Gaps = 31/406 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G   F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIG---FNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI- 217
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 218 -DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVKS-LVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 --IHLKKVCAIHNKQQVTISVEGK----------DFDFLFPLPGEFQVYNALVAAGLCIA 324
              +LK    I   +  TI V+ +          +  F      +  + NA+ A    + 
Sbjct: 637 LQENLKHGNPIVFYRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +   
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVNGINVILDYGHNIDGYKVVIDSLKNLGLK 756

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI----- 436
            I  + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+     
Sbjct: 757 NITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNR 816

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                    +  EA+R  +++  K + +++  + +E+++ + N  K
Sbjct: 817 KDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFK 862


>gi|255325343|ref|ZP_05366449.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297908|gb|EET77219.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
          Length = 487

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 89/431 (20%), Positives = 153/431 (35%), Gaps = 60/431 (13%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    + +   + P++   +    L          H + +LA  GT GK
Sbjct: 75  VVVTSFAAIPQDNPELVAAKDNDIPVIRRSDLLAAL-------MEGHKQVLLA--GTHGK 125

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G   SF IG     +                        + G T  
Sbjct: 126 TSTTSMTVSAMQHAGLDPSFAIGGQLNRAGTN---------------------AHGGTGE 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +  A +   D   L          T +  DH+D+  +++AYF       + + P+    +
Sbjct: 165 AFVAEADESDASLLRY-SPDVAVLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLV 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQVTISV 295
           + A+D ++    +RA   G  V++ G               +  ++  A      V + +
Sbjct: 224 VCAEDEHAARAGERALERGINVVAYGSAEKSFTSTVPLAAELVREETTAEGMDTTVKLDL 283

Query: 296 EG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
            G  +   +   +PG   V N++ A    +  G   A + E L     V  RFE+   V 
Sbjct: 284 PGVSETVRYELQIPGHHMVLNSMGALIAGVLSGGAPAAIAEGLADFSGVRRRFEYRGSVD 343

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-----TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              +  R++ DYAH    +  +L+  R         GR+I  F         +       
Sbjct: 344 KQGKPVRVFDDYAHHPTEVAAVLRAARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQ 403

Query: 406 ALDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           AL LAD A+V D     E P +     I  + +      I + +   A R  + ++   D
Sbjct: 404 ALSLADAAVVLDIYGAREQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGD 463

Query: 461 VLVVAGKGHET 471
           V++  G G  T
Sbjct: 464 VVLTIGAGSVT 474


>gi|110801078|ref|YP_696891.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124]
 gi|110675725|gb|ABG84712.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124]
          Length = 874

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 167/406 (41%), Gaps = 31/406 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G   F +G T+T      
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIG---FNVGCTTTSGVKIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI- 217
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 218 -DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D     +     K  L  E +     ++I ADD +S +V+ R       + S+    K+
Sbjct: 579 IDGINDMEDLSFVKS-LVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636

Query: 277 --IHLKKVCAIHNKQQVTISVEGK----------DFDFLFPLPGEFQVYNALVAAGLCIA 324
              +LK    I   +  TI V+ +          +  F      +  + NA+ A    + 
Sbjct: 637 LQENLKHGNPIVFYRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696

Query: 325 IGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +   
Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVNGINVILDYGHNIDGYKVVIDSLKNLGLK 756

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI----- 436
            I  + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+     
Sbjct: 757 NITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNR 816

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                    +  EA+R  +++  K + +++  + +E+++ + N  K
Sbjct: 817 KDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFK 862


>gi|86740117|ref|YP_480517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
 gi|86566979|gb|ABD10788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
          Length = 467

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/470 (18%), Positives = 153/470 (32%), Gaps = 43/470 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+ +          +    +  V  DSR ++ G +FVA+ G++ DGH F    
Sbjct: 1   MIPLTLAEVASATGGRLDAVPDPGVTVRSVVVDSREVRDGALFVALAGSRVDGHDFAA-- 58

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
                     + A       A      P ++V +    L+  A+ +       ++AVTG+
Sbjct: 59  ---------AAVAAGASAVLAARSVGEPAVIVPDPPSALAALAAYVRDLAAATVVAVTGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +      +    G  +           T P   ++             
Sbjct: 110 AGKTTTKDLLADVLGGLAPTVAAPGSFNNEIGLPLTLLRTEPDTAFV------------- 156

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKES 242
            + + A   G         +   G   N+G  H+  +   +     AK  L E       
Sbjct: 157 VLEMGARGPGHIATLCAVARPAVGVVLNVGSAHLGEYADGRLGIAAAKGELAEA---ASE 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDF 300
             ++ ADD     V   A      V++ G  G+         +    + +  +   G+  
Sbjct: 214 AVVLNADDPL---VAAMAVRTTAEVITFGEGGRADVRAGAVDVDRLGRASFDLLAHGEHH 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G  QV NAL AA + I +G+    V   L            V + + G  +  
Sbjct: 271 RVTLGLVGAHQVPNALAAAAVAIRLGLSPDRVAAALSAARPRSRWRMEVTSTAAGVVVVN 330

Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAI 414
           D Y     S+   LK +  +   GR   V G     GD    +  ++G+ A+    D  I
Sbjct: 331 DAYNANPESMRAALKALVDMRGKGRAFAVLGPMGELGDAAAAEHDVLGRFAVRLGVDRLI 390

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 R             G    +E  +  EA+          DV++V
Sbjct: 391 AVGPAARHIHLGASLEGSWDG--ESVEVTDAEEAVALVAAQAGPDDVVLV 438


>gi|330950223|gb|EGH50483.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae Cit 7]
          Length = 458

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 142/429 (33%), Gaps = 52/429 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI        GA+ +VVSSA +  +          I VV    + L+      +G     
Sbjct: 37  FIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG----- 90

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +AV GT GK++  S +  +    G   +F IG     +        +          ++
Sbjct: 91  -IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIA 142

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+  ++            F 
Sbjct: 143 EADESDASFL---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFL 187

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++          L+ G+ +   I    V         T+ 
Sbjct: 188 HNLPFYGLAVMCIDDPVVREILPLVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVL 244

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
              ++  D    +PG   V N+L    +    G+    +++ L     V  RF+    + 
Sbjct: 245 RRDREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELP 304

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     +  DY H    +  ++  +R      R+++V+                  L  
Sbjct: 305 VDGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD 364

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQD 460
           A++ ++ +  P  E+P  I       +   I +  +++   I   +E+           D
Sbjct: 365 ANVLLLMEVYPAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 422

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 423 ILLCQGAGD 431


>gi|242278166|ref|YP_002990295.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio salexigens
           DSM 2638]
 gi|259509766|sp|C6BYG5|MURC_DESAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|242121060|gb|ACS78756.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio salexigens DSM
           2638]
          Length = 470

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 138/380 (36%), Gaps = 53/380 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTR--------KFLSLFASRLY 110
           +  GA+  +   A ++ D         I  + P LV             + L+       
Sbjct: 47  LKMGAQVFIGHGADNVNDADVVVKSTAISDDNPELVKARELGIPIIPRAEMLAELMRLRT 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPI 168
           G      +AV GT GK++  S +  I   + L    I  G  +T  S             
Sbjct: 107 G------IAVAGTHGKTTTTSLLATIFTEAELDPTVIIGGRLNTFGS-----NARLGDGQ 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           +L   ++       + +                +  I    TN+ +DH+D++  Q+A   
Sbjct: 156 FL---IAEADESDGSFLC---------------LAPIITVVTNVDKDHLDFYGGQEAIDE 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +  R F   +P     ++  DD   + ++          ++ G         ++ +   +
Sbjct: 198 S-FRKFMNSIPFYGMNVVCGDDPGVQRLLPSIKRPC---MTYGLNKGNRLRGEILSCEVR 253

Query: 289 QQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               + ++ K   +     PG+  V NAL A G+ +  G+D  ++L  L     V  RFE
Sbjct: 254 SLFKVYLDEKLLGEVSLAQPGKHNVLNALGAIGVSLEAGLDPKVILSGLSNFMGVGRRFE 313

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA- 406
             G  S+G  +  DY H    ++  ++  ++    R +VV      R      + G+   
Sbjct: 314 KKG-ESKGILVVDDYGHHPAEIQATIETAKSCFPQRRLVV-AFQPHRFTRTEALFGEFCK 371

Query: 407 -LDLADIAIVTDDNPRSEDP 425
             + AD  ++T+  P SEDP
Sbjct: 372 TFEKADELLLTEIYPASEDP 391


>gi|167759619|ref|ZP_02431746.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
 gi|167662745|gb|EDS06875.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
          Length = 487

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 146/416 (35%), Gaps = 49/416 (11%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G + +V ++A     ++++  ++   P+L   +  + L    +       +  +A++GT 
Sbjct: 97  GIDVVVYTAAIHEDNEEYAQALKKGLPML---SRAELLGQLMTNY-----DVPIAISGTH 148

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I   +G     I     + +   + ++   S +++ +A  Y +S     
Sbjct: 149 GKTTTTSMLSHIL-LAGEMDPTISVGGILKAIGGNIKVGK-SELFVTEACEYTNSFLHFF 206

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+D+ +      ++    F +LLPK+   
Sbjct: 207 -------------------PKISVILNIDEDHLDFFKDLDDIRSS-FHKFAKLLPKDGTL 246

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDF--D 301
           II  +      + K      CR++  G      +     + +   + +   V+   F   
Sbjct: 247 IINGNIDKLDCITK---GLDCRIIKYGDDSSMDYSATNISHNKLGEASFDLVKAGVFVDR 303

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+  V NAL A  +   +G+    + + L++      RFE+ G    G  I  D
Sbjct: 304 ISLSVNGDHNVSNALAAIAVSDLLGVSLDKMKKGLKEFTGTNRRFEYKG-EMDGVTIIDD 362

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    +   L   +      +  VF                 AL  AD  +++D    
Sbjct: 363 YAHHPTEINATLTAAKYYPHRELWCVFQPHTYTRTKALFHEFVEALAHADHVVLSDIYAA 422

Query: 422 SEDP------EKIRAEI-IHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
            E        + I   +   G   +       E I+   +E   K D+L+  G G 
Sbjct: 423 RETDTLGISSKDIADALKEKGCDAYYFSS--FEDIQDFCVEKCQKGDLLITMGAGD 476


>gi|38234172|ref|NP_939939.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|48428297|sp|P61677|MURC_CORDI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|38200434|emb|CAE50122.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium diphtheriae]
          Length = 477

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 90/422 (21%), Positives = 138/422 (32%), Gaps = 50/422 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S A   QD      +    + V      L          H + ++A  GT GK+S 
Sbjct: 72  VVVTSFAAIPQDNPELQEARANNIPVIRRSDLLGEL----MEDHQQVLIA--GTHGKTST 125

Query: 130 ASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            S      Q +G   SF IG                     L KA +            E
Sbjct: 126 TSMAVVALQAAGKDPSFAIG-------------------GQLNKAGTNAHDGTGKAFVAE 166

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A        R    K      TN+  DH+D+ +T +AYF      F E +      ++  
Sbjct: 167 ADESDASLLRY---KPDIAVVTNIEPDHLDFFKTSEAYFKV-FDDFAERVQPGGTLVVCL 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--------HNKQQVTISVEGKDF 300
           DD ++  + ++  +    V   G          V               +  I+V     
Sbjct: 223 DDPHAAALGEKFKDRMT-VRGYGSPAAAQQYPDVAFTVVEHMEVGPAGTRARITVGDDTV 281

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----G 356
           D +  +PG   V NA  A    +  G +   +   +     V  RFEF G  S G     
Sbjct: 282 DVIMRIPGHHMVLNACAALTAGVTAGAELERLAAGISDFSGVRRRFEFHGRVSGGAFHDA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +Y DYAH    +  +LK  R        GR++V F         +       AL LAD 
Sbjct: 342 EVYDDYAHHPTEVTAVLKAARQQQEARGIGRVVVAFQPHLYSRTMEFAAEFAEALSLADH 401

Query: 413 AIVTDDNPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
           A++ D     E P +      I   +   +       A+   + ++    D++V  G G 
Sbjct: 402 AVILDIFGAREQPVEGVDSRIISDKMTIPVVFEPNFSAVAAQVKKIAQPNDIIVTMGAGS 461

Query: 470 ET 471
            T
Sbjct: 462 VT 463


>gi|327399669|ref|YP_004340538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
 gi|327182298|gb|AEA34479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
          Length = 429

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 132/421 (31%), Gaps = 65/421 (15%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E+I  L    +   R+  I   S DSR I+ G +FV I G + DG  F P+A+ +   
Sbjct: 5   LDEIIAVLKPKSISLDRDYTIKGFSIDSRAIKEGEVFVGIKGERFDGTDFAPEAVKKSKT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             +V               + P ++V+N    L   A+    K     +A+ G+ GK++ 
Sbjct: 65  FAIVEKKV-----------DCPHIIVNNALGALKRLATYKLKKSGAISVAIVGSVGKTTT 113

Query: 130 ASFV-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
              V         +C+     +  IG   T                     L  +  +  
Sbjct: 114 KELVADFLSCRYSVCRSLENENNIIGVCKT---------------------LLRVEDEDF 152

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V V  ++ G  +      +     F N+   HI   +   A F  K ++    + K S
Sbjct: 153 CVVEVGINNPGEMEEIAAFFEPDNVLFLNVTSTHIGNFENIDAIFKEKSKI----INKSS 208

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +  ADD    E++K A           + G      +       + +T+         
Sbjct: 209 RLVYNADD----EILKEAFEGKENSFGFCFFGDCEFRAENNNNVKVEDITL--------- 255

Query: 303 LFPLPGEFQVYNALVAAGLCIAIG--IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P     Y  L         G   D     + L+    V  R        +   I  
Sbjct: 256 --KKPFGLNPYTVLSGFVAAFVFGGFKDETCFNDKLKAFKPVGYRMRPEILEDKLF-ILD 312

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y    NS+   +  +  +   ++ +   +   G   ++  R +   +     D+  V  
Sbjct: 313 CYNANVNSMMHAIDELAKLKGRKLAILGDMLELGSFSERFHRDVGLYLNGKDIDLLAVGG 372

Query: 418 D 418
           D
Sbjct: 373 D 373


>gi|302185268|ref|ZP_07261941.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae 642]
          Length = 486

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 142/429 (33%), Gaps = 52/429 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI        GA+ +VVSSA +  +          I VV    + L+      +G     
Sbjct: 65  FIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG----- 118

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +AV GT GK++  S +  +    G   +F IG     +        +          ++
Sbjct: 119 -IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIA 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+  ++            F 
Sbjct: 171 EADESDASFL---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFL 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++          L+ G+ +   I    V         T+ 
Sbjct: 216 HNLPFYGLAVMCIDDPVVREILPLVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVL 272

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
              ++  D    +PG   V N+L    +    G+    +++ L     V  RF+    + 
Sbjct: 273 RRDREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELP 332

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     +  DY H    +  ++  +R      R+++V+                  L  
Sbjct: 333 VDGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQD 460
           A++ ++ +  P  E+P  I       +   I +  +++   I   +E+           D
Sbjct: 393 ANVLLLMEVYPAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 451 ILLCQGAGD 459


>gi|332528462|ref|ZP_08404454.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
 gi|332042141|gb|EGI78475.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
          Length = 477

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 153/435 (35%), Gaps = 57/435 (13%)

Query: 57  HLFIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
             F+  A      A+A+V S+A    +       +  I +V      L+       G   
Sbjct: 52  RTFVGHAAQHVADADAVVTSTAVKADNPEVLAARDKHIPIVPRAVM-LAELMRLKRG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +   +GL      PT  I                L  A 
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAEAGLD-----PTFVIGGR-------------LNSAG 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +         + VEA     D   L+ +  +    TN+  DH++ +             F
Sbjct: 147 ANARLGQGEFIVVEADES--DASFLNLL-PVLSVVTNIDADHMETYGHDFGRLKQAFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    AI+  DD   +EV   A    C + S G+ G    ++ V       Q+  +
Sbjct: 204 LHRMPFYGTAILCTDDPAVREV---ADTVNCPITSYGF-GDNAQVRAVNVRAVGGQMHFT 259

Query: 295 VEGK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            + +      D + +  L G   V NAL A  +   + I    +L+ L +   V  RF+ 
Sbjct: 260 AQRRNGVVLPDLEVVLNLAGRHNVLNALSAIAVAAELEIPDVALLKALAEFKGVGRRFQR 319

Query: 349 VG-TNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIM 402
            G   ++GG    +  DY H    +   L   R    G+ +V+        R +      
Sbjct: 320 YGEIPAKGGGTFTLIDDYGHHPVEMAATLSAARGAFPGQRLVLAFQPHRYTRTRDCFEDF 379

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAI 453
            K+  + AD  ++ +     E P  I A     +   +    ++E +         +T +
Sbjct: 380 VKVIGESADAVLLAEVYAAGESP--IVAADGRSLTRALRVAAKVEPVFVDDIAAMPQTIL 437

Query: 454 EMLNKQDVLVVAGKG 468
           ++    DV++  G G
Sbjct: 438 DLARAGDVVMCMGAG 452


>gi|294666420|ref|ZP_06731664.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603789|gb|EFF47196.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 477

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 147/429 (34%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G  + G     R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTGTGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
           P  E P        +   I            +I  +   + ++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI+ NG
Sbjct: 463 VAQHIINNG 471


>gi|89902193|ref|YP_524664.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
 gi|109892729|sp|Q21SX0|MURC_RHOFD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89346930|gb|ABD71133.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
          Length = 477

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 148/432 (34%), Gaps = 55/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+A+V S+A    +          I VV      L+       G    
Sbjct: 56  GH---EAAHVAGADAVVTSTAVQADNPEVLSAREKHIPVVPRAVM-LAELMRLKTG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   +GL    +     ++S   + RL     I +    S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEAGLDPTFV-IGGRLNSAGVNARLGQGDYIVVEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH++ +             F 
Sbjct: 165 DASFLN--------------------LSPVMAVVTNIDADHMETYGHDFGRLKQAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             +P    AI+  DD   ++++ +     C + S G+ +G  +    V A+  +   T+ 
Sbjct: 205 HRMPFYGTAILCTDDPAVRDIVPQVT---CPISSYGFEEGAELRAVNVRAVDGQMHFTVQ 261

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D D +  L G   V NAL A  + + + I  A+V + L     V  RF+  G
Sbjct: 262 RRNGVVLPDLDVVLNLAGRHNVLNALSAIAVAVELNIADAVVQKALAGFKGVGRRFQRYG 321

Query: 351 T----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI- 405
                +     +  DY H    +   L   R    GR +V+        + +      I 
Sbjct: 322 EVRAQDGGTFTLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFIK 381

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------AIRTAI-EML 456
            +  AD  ++ +     E P  I A     +   +    RIE        A+  AI +  
Sbjct: 382 VIAQADAVLLAEVYGAGEAP--IVAADGRTLARALRVAGRIEPVFVDDIAAMPQAIADNA 439

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 440 RDGDVVLCMGAG 451


>gi|315924910|ref|ZP_07921127.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621809|gb|EFV01773.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 480

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 150/449 (33%), Gaps = 47/449 (10%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYG 111
            +  +   +GA   +   A ++ D      F+A +  + P ++  N      +  S   G
Sbjct: 49  KYTEKLAGKGATIHIGQRAENIGDDIDMAVFTAAVHEDNPEMIRANALDIPLVERSDYLG 108

Query: 112 KHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +     + V GT GK++ +S +  +   + +                 N     S  
Sbjct: 109 LLSQVFPKTIGVAGTHGKTTTSSMIATLLHCAEMDPSV--SIGGNIGVIGGNATLGKSDY 166

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            + ++  Y+ S   T                       G  TN+  DH+DY +       
Sbjct: 167 LVIESCEYVDSFLKTEHF-------------------IGVITNIEEDHLDYFKGGLKQIK 207

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                F  +LP +   I Y D   S +V+    +  C+V++ G   K   + +    +++
Sbjct: 208 HSFHDFGSILPPDGLMIAYGD---SDDVLDVVSDLACQVITYGLSDKNEWVARNITYNDE 264

Query: 289 QQ--VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                     G  +  F   +PG+  V NA+        + I    V E L+       R
Sbjct: 265 GNPFFDAYHNGTLYGRFALRIPGQHNVLNAMACIACADYLNIQKETVEEALDHFGGAKRR 324

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           FEF G    G  +Y DYAH    L++++         ++ VV+                 
Sbjct: 325 FEFRGAVG-GINVYEDYAHHPTELKVVIDACLNHAHNKLWVVYQPHSYSRIYYLFDEFVK 383

Query: 406 ALDLADIAIVTDDNPRSED------PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNK 458
           + +  D  ++++     E       PE +   I        +      + ++   + +  
Sbjct: 384 SFEKVDKLVISEIYSNRETNDWDIFPEDLAKRIKQNYQVPAVVISEFADIVKFLTDNVEA 443

Query: 459 QDVLVVAGKGH---ETVHIVTNGEKKMSV 484
            D+++VAG G        +V    +K   
Sbjct: 444 DDLVLVAGAGDINKVAYMLVDALREKYPD 472


>gi|116750889|ref|YP_847576.1| UDP-N-acetylmuramate--alanine ligase [Syntrophobacter fumaroxidans
           MPOB]
 gi|166224744|sp|A0LNY9|MURC_SYNFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116699953|gb|ABK19141.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 469

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 151/433 (34%), Gaps = 52/433 (12%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYS---LQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G     GH      +  GA+ +V+SSA S    ++ +A      P++     R+   + A
Sbjct: 50  GAAVHLGHR-AEHVL--GADVVVLSSAISDDNPENRAAREMGKVPVI-----RRA-EMLA 100

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
             +  K+    + V G  GK++  S V  +  R GL      PT  I             
Sbjct: 101 ELMRLKYS---VLVAGAHGKTTTTSMVSTVLARGGLD-----PTVVIGGK---------- 142

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L    +         +  EA            +       TN+  +H+D+++     
Sbjct: 143 ---LNAWGTNAKLGNGDFMVAEAD---ESDGTFLLLPPTIAVVTNIDLEHLDFYRDLAHI 196

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAI 285
               ++ F   +P    A++  +D   + ++ R      R  + G+        + V   
Sbjct: 197 QETFLQ-FINKIPFYGQAVLCLEDENIQSILPRVEK---RFTTYGFSSQADFQARDVRTS 252

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                  +   G +  +    +PG   V N+L A  +   + +D A + + L  +  V  
Sbjct: 253 GLFSSYRVHSHGDELGEIEIRIPGRHNVLNSLAAVAVARELDLDWANIQDGLRDMTGVQR 312

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG 403
           RF+  G  +    +  DY H  + +  +L+ +       R IVVF               
Sbjct: 313 RFQIKGEAAN-VLVIDDYGHHPSEIRAVLQTLADCYPDRRRIVVFQPHRYTRTRALMEQF 371

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEML 456
                 +D+ +VT+    SE P      E++  EI  HG            A+   ++++
Sbjct: 372 ARCFYHSDVLLVTEIYAASETPIPGVTGERLSQEIASHGHHDLHFCETVESALSRLVKLV 431

Query: 457 NKQDVLVVAGKGH 469
              D ++  G G+
Sbjct: 432 KPGDAVITLGAGN 444


>gi|319639047|ref|ZP_07993804.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
 gi|317399625|gb|EFV80289.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
          Length = 469

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 139/423 (32%), Gaps = 53/423 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    I   +GL    +     +++   + RL           ++       + +
Sbjct: 117 KTTTTSLTASILGAAGLDPTFV-IGGKLNAAGTNARLGKGE-----YIVAEADESDASFL 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  I    TN+  DH+D +       +     F   +P    A 
Sbjct: 171 Y---------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAF 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGKD 299
           +  D  + + ++ +         + G      I+   +  +  + + T+ V     E + 
Sbjct: 216 LCIDSEHVRAILPKISKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEP 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRG 355
           F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N   
Sbjct: 273 FEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGA 332

Query: 356 GRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DY H    +   +          R+++ F                  L+  D  +
Sbjct: 333 ALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALV 392

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVA 465
           +T+     E+P  I A     +   I    ++E I         +  + +L   DV++  
Sbjct: 393 LTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVVLNM 450

Query: 466 GKG 468
           G G
Sbjct: 451 GAG 453


>gi|289624983|ref|ZP_06457937.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647041|ref|ZP_06478384.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488536|ref|ZP_07006566.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156877|gb|EFH97967.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 486

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 142/429 (33%), Gaps = 52/429 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI        GA+ +VVSSA +  +          I VV    + L+      +G     
Sbjct: 65  FIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG----- 118

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +AV GT GK++  S +  +    G   +F IG     +        +          ++
Sbjct: 119 -IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIA 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+  ++            F 
Sbjct: 171 EADESDASFL---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFL 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++          L+ G+ +   I    V         T+ 
Sbjct: 216 HNLPFYGLAVMCIDDPVVREILPLVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVL 272

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
              ++  D    +PG   V N+L    +    G+    +++ L     V  RF+    + 
Sbjct: 273 RRDREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELP 332

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     +  DY H    +  ++  +R      R+++V+                  L  
Sbjct: 333 VDGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQD 460
           A++ ++ +  P  E+P  I       +   I +  +++   I   +E+           D
Sbjct: 393 ANVLLLMEVYPAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 451 ILLCQGAGD 459


>gi|213581231|ref|ZP_03363057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 138

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/138 (44%), Positives = 83/138 (60%), Gaps = 4/138 (2%)

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR
Sbjct: 1   YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPR 60

Query: 422 SEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           +E+P  I  +I+ G+    +      R EA+  AI      DV+++AGKGHE   IV   
Sbjct: 61  TEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQ 120

Query: 479 EKKMSVDCDIIREILGLI 496
               S D      +LG+I
Sbjct: 121 RLDYS-DRVTAARLLGVI 137


>gi|330895226|gb|EGH27564.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 486

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 142/429 (33%), Gaps = 52/429 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI        GA+ +VVSSA +  +          I VV    + L+      +G     
Sbjct: 65  FIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG----- 118

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +AV GT GK++  S +  +    G   +F IG     +        +          ++
Sbjct: 119 -IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIA 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+  ++            F 
Sbjct: 171 EADESDASFL---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFL 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++          L+ G+ +   I    V         T+ 
Sbjct: 216 HNLPFYGLAVMCIDDPVVREILPLVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVL 272

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
              ++  D    +PG   V N+L    +    G+    +++ L     V  RF+    + 
Sbjct: 273 RRDREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELP 332

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     +  DY H    +  ++  +R      R+++V+                  L  
Sbjct: 333 VDGGNVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQD 460
           A++ ++ +  P  E+P  I       +   I +  +++   I   +E+           D
Sbjct: 393 ANVLLLMEVYPAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 451 ILLCQGAGD 459


>gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
 gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
          Length = 821

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 166/481 (34%), Gaps = 55/481 (11%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           L       R  +I+ + +DSR +      +F A+   + DGH ++P+   +G    VV  
Sbjct: 12  LGAKRFGDRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVV-- 69

Query: 76  AYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                +  A ++S  +   L + N  K L   A +   +    ++ +TG++GK+ V  ++
Sbjct: 70  ----GELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            Q+               T S  + ++++  P  ++L    + L+           S  G
Sbjct: 126 YQLLS--------PDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEA-----GISEMG 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY- 252
             +     IK   G  TN+G  H +   + Q     K+ LF++        I   D+   
Sbjct: 173 EMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDC----DVIIYDGDNELI 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S  V K    +     S     + + ++ +    +   +     G   +F  P   +  +
Sbjct: 229 SSCVAKSLFTSREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASI 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N+L    + + + +    + E + +L  +  R E     +    I   Y     SL++ 
Sbjct: 289 ENSLHCLAVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIA 348

Query: 373 LKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNPRSEDP 425
           L  +         +  ++     +  Q  + +  ++A        +  I   +  R+   
Sbjct: 349 LDFMSRRSDDKGKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRT--- 405

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              R EI        E            E+L      ++A  G     I+  G +    D
Sbjct: 406 AAARFEIEKYFFRTTE------------ELLESD---LLA--GLRNEVILVKGSRAFHFD 448

Query: 486 C 486
            
Sbjct: 449 R 449


>gi|254513896|ref|ZP_05125957.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
 gi|219676139|gb|EED32504.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
          Length = 928

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 134/382 (35%), Gaps = 36/382 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I A+TGT+GK++ +  +  I + SGL+   +G TST   +                A
Sbjct: 490 SIPIAAITGTNGKTTTSRMLAHILKMSGLT---VGQTSTDGVYIDGRLTVAGDMTGPTAA 546

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKM 231
              L    V    +E +  G+ +  L   +    +  N+  DH+      + +     K 
Sbjct: 547 QIVLRDPSVNAAVMETARGGILRSGLGYQRSNVSACLNIAADHLGLKGVNSLEDLAEVKR 606

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKKVC 283
            + E        A++ ADD +  ++           +++      +            + 
Sbjct: 607 VVVE---VARDAAVLNADDVHCLQMADHCTAEKLCYVTMNRSHPLVREHIKAGGTALVLE 663

Query: 284 AIHNKQQVTISVEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              N   +T+  E                        V NA+ AA L   + ID   + +
Sbjct: 664 QGINGGMITLYDEQGHNIPLLWTHLIPATLEGRAMHNVQNAMFAAALAYHMHIDLENIRQ 723

Query: 335 HLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
            L        +        +    ++ +DYAH   +++M+   +      GR IVV    
Sbjct: 724 GLRTFDSTFFQSPGRLNVYDKHPFKVILDYAHNPAAVKMVCDVVDRYEIGGRKIVVLTMP 783

Query: 392 GDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---- 446
           GDR       +  IA    D  I   DDN R  +P ++ A +  G+       +RI    
Sbjct: 784 GDRRDEDIVEVAGIAAGHFDHYICRRDDNLRGREPSEVPALLKQGLLAGGVPEDRIQIIE 843

Query: 447 ---EAIRTAIEMLNKQDVLVVA 465
              EA + A++M    D+L++ 
Sbjct: 844 REEEANQAALDMARGGDLLLIL 865


>gi|291296378|ref|YP_003507776.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
 gi|290471337|gb|ADD28756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
          Length = 439

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 137/451 (30%), Gaps = 55/451 (12%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           PE +  L+   +       +++  DSR +  G  F A+ G +  G  F  QA+  GA  +
Sbjct: 12  PEWVASLTGGQVHPGASVAHDLHWDSRQVGPGVAFFALPGARTHGREFGQQAVQAGAAFV 71

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V    +               + V    + L      L  +   ++LAV G+SGK++   
Sbjct: 72  VSDLNHPGA------------VQVARPERALLAVGRALRDQFRGSVLAVGGSSGKTTTKE 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + Q                              +   L +   +L       V +    
Sbjct: 120 CLAQGLA------------------WPAPEGNLNNAPGLTRFFFHLEPAEGCVVELGIDR 161

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                      +   G  T LG +H++     +     +  L +        + +     
Sbjct: 162 LLEMAELTYLARPDIGVLTGLGVEHLEGLGNLENVVREESWLLQ-------VSPLRLASV 214

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            + E++         +++ G +      + V       +     EGK      P PG   
Sbjct: 215 QAAELLD-----LPNLVTYGIEAGDFRAEGVEMGLEATRFRF--EGK--VVHLPYPGVGP 265

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V  AL A  +   +    A  +E L  L + PGR + +        I+  Y     S + 
Sbjct: 266 VMGALAALAVARMLDKPLAQTIERLAALRLPPGRMQRLRLGGIDF-IHDAYNANPLSFKA 324

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  ++    GR  +V G   +  Q       + A   A +      N     P   +  
Sbjct: 325 GMAFLQA-QPGRKWLVLGRMAELGQEALKHHLEAARLAAAV----SPNLVFVGPFAKQQA 379

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              G           EA++     +   D++
Sbjct: 380 AEAGGTAVETIE---EAVQLLFGKVQPGDLV 407


>gi|146305958|ref|YP_001186423.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
 gi|189029020|sp|A4XQS5|MURC_PSEMY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145574159|gb|ABP83691.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
          Length = 480

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 149/436 (34%), Gaps = 66/436 (15%)

Query: 59  FIPQAIAQG--AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI  A      A+ +VVSSA +  +          I VV    + L+      +G     
Sbjct: 67  FIGHAAENAEQADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG----- 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +AV GT GK++  S +  +    G   +F IG     +           S  +L   ++
Sbjct: 121 -IAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLNAAG----TNAQLGSSRFL---IA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+  +             F 
Sbjct: 173 EADESDASFL---------------HLQPMVSVVTNIDADHMSTYGGDFNRLKKTFIEFL 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT-I 293
             LP    A++  DD   +E++ +        ++ G+ +   +    V     +   T +
Sbjct: 218 HNLPFYGLAVLCVDDPVVRELLPQVGRP---TVTYGFAEDADVRAINVRQEGMRTYFTVL 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
             + +  D    +PG   V NAL    +    GID A ++  L     V  RF+    + 
Sbjct: 275 RPDCEPLDVSVNMPGNHNVLNALATIAIATDEGIDDAAIVAGLSGFQGVGRRFQVYGELP 334

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     +  DY H    +  ++K +R      R+++V+                  L  
Sbjct: 335 VDGGSVMLVDDYGHHPREVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVQVLGE 394

Query: 410 ADIAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEML---- 456
           A++ ++ +  P  E+  P     ++ H I       P ++E+G         +++     
Sbjct: 395 ANVLLLVEVYPAGEEPIPGADSRQMCHSIRQRGQLDPIYVERG---------VDLAPLLK 445

Query: 457 ---NKQDVLVVAGKGH 469
                 D+L+  G G 
Sbjct: 446 PLLRAGDILLCQGAGD 461


>gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M0579]
 gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240149]
 gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis NZ-05/33]
          Length = 445

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 165/418 (39%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ ADDA+ + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|324998739|ref|ZP_08119851.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia sp. P1]
          Length = 478

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 96/415 (23%), Positives = 140/415 (33%), Gaps = 47/415 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS+A    +       +  + VV          A+   G+    ++AV GT GK+S  
Sbjct: 76  VVVSTAIRETNPELAAARDQGLQVVHRAVA----LAALTEGR---RLVAVAGTHGKTSTT 128

Query: 131 SFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S V    Q +G   SF IG   ++S     +                          VEA
Sbjct: 129 SMVTVALQHTGADPSFAIGGDLSVSGSGAHHGSG-------------------DVFVVEA 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  DH+D+H   +A + A    F E L   +  +  AD
Sbjct: 170 DESDGS---FTAFAPSVAVVTNVEPDHLDHHGD-EATYRAVFERFLERLVPGATLVTCAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           D  S+ V   A  AG  V   G      +   L          +      G++ +    +
Sbjct: 226 DPGSELVAVHAERAGITVRRYGRTATGSQDARLLDFAPDGVGSRTRFRWGGEEHELALGV 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE    NAL A     A+  D A +LE L     V  RFEF G   RG  +Y DYAH  
Sbjct: 286 PGEHMALNALGAFLAGTAVDQDPAALLEGLAGFGGVQRRFEFKG-RVRGVAVYDDYAHHP 344

Query: 367 NSLEMILKNIRTITS------GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             +   L+  R          GR++V F                 +L LAD  +V D   
Sbjct: 345 TEVAATLRAAREAAPVVQGRRGRVLVAFQPHLYSRTRLFAGEFGASLSLADEVMVLDVYG 404

Query: 421 RSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             EDPE       I  ++           +  +       +    D ++  G G 
Sbjct: 405 AREDPEPGVGPALITDQVRLPAERVHRAPSWEKTPAAIAALAADGDTVITMGAGD 459


>gi|83942742|ref|ZP_00955203.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. EE-36]
 gi|83846835|gb|EAP84711.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. EE-36]
          Length = 471

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 135/413 (32%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+SSA      +  A   +  PI+        L            ++ +AV GT 
Sbjct: 70  GAAVVVISSAIKPGNPELDAARVAGLPIVRRAEMLAELMRL---------KSNIAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V ++    G+    +     I ++  + R+     +                
Sbjct: 121 GKTTTTTMVAELLVNGGIDPTVVNG-GIIHAYGSNARMGQGEWM---------------- 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VEA       +RL          TN+  +H+++              F   +P    A
Sbjct: 164 -VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGDFDTLRKG-FLDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDF-DF 302
           +   D    + ++ +  +          Q     +     A      +    EG    D 
Sbjct: 219 VCCIDHPEVQALVGKITDRRVMTYGFNTQADVRAVNLHYKAGVAHFDIMFQTEGITIKDC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NA+ A  +   +G+ +  +   L     V  RF  VG    G  I  DY
Sbjct: 279 SLPMPGDHNVSNAMAAVAVSRHLGMKTEEIRAALAGFGGVNRRFTKVG-EVDGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  T GR+I V                    + AD+  + +     
Sbjct: 338 GHHPVEITAVLKAARQATEGRVIAVHQPHRYSRLHHHFEEFCACFNDADVVGIAEVYAAG 397

Query: 423 EDP--EKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468
           E P     R +++ G+     +  R      +  R   E     D++V  G G
Sbjct: 398 EAPIEGAGRDDLVAGLIRHGHRHARAVQSEDDLARLVREQAGPGDMVVCLGAG 450


>gi|256821915|ref|YP_003145878.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
 gi|256795454|gb|ACV26110.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
          Length = 489

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 140/417 (33%), Gaps = 51/417 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S+A    +          + VV    + L+      +G      +AV GT GK++ 
Sbjct: 83  VVVASTAIPKNNPELEAAREHRVPVVPRA-EMLAELMRFRHG------VAVAGTHGKTTT 135

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I    GL      PT  I         +  S   L  +  +++    +  S   
Sbjct: 136 TSLIASIFAEGGLD-----PTFVIGGL----LNSAGSNARLGTSRFFIAEADESDASFLH 186

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       I+ +    TN+  DH+D +             F   LP    A++  D
Sbjct: 187 ------------IQPMVAVVTNIEADHMDTYGGDFKNLENNFIDFLHNLPFYGLAVMCID 234

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFP 305
           D   +E+M R        ++ G+ +   +          K    +     +G + +    
Sbjct: 235 DKTVQEIMPRVTRP---TVTYGFSEDADVRAVDFTQSGTKSHFKVIRRDYDG-ELEITLN 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDY 362
           LPG   V NAL A  +    G+    + + L +   +  RF+  G    + +   +  DY
Sbjct: 291 LPGRHNVQNALAAIAVATEDGVSDQAIQKALSEFGGIGRRFQMYGDFKVDGKTITLMDDY 350

Query: 363 AHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H  + +   ++ + R+    R+++V+                  L   D  ++ +    
Sbjct: 351 GHHPSEVMATIEAMRRSWPERRLVMVYQPHRYSRTRDLYEDFSKVLSEVDALLLLEVYAA 410

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGH 469
            E+P  I       +   I +  +IE I              +L   DV+V  G G+
Sbjct: 411 GEEP--IPGADSRSLCRSIRQRGKIEPIHVEKIAQLPELLSNILQDGDVVVTQGAGN 465


>gi|163751825|ref|ZP_02159041.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
 gi|161328310|gb|EDP99471.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
          Length = 489

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 147/429 (34%), Gaps = 51/429 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q     A+ +VVS+A   ++          I VV    + L+      +G    
Sbjct: 72  GHQ-AEQVHD--ADVVVVSTAIDAENPELVAARKLRIPVVQRA-EMLAELMRYRHG---- 123

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +  ++G       PT  I                    ++
Sbjct: 124 --VAVAGTHGKTTTTSLIASVYAQAGRD-----PTFVIGGLLNSAGTNARLGHSRY-LIA 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D +        +    F 
Sbjct: 176 EADESDASFL---------------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFIDFL 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++      G +++S G+ +   I          +   T+ 
Sbjct: 221 HNLPFYGVAVMCIDDPVIRELL---PKVGRKIVSYGFSEDADIQALNFVQQGYRSHFTLR 277

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            EG  D + +  LPGE  V NAL A  +     I+   ++  L +   +  RF+ +G   
Sbjct: 278 REGVADIEVMVNLPGEHNVLNALAAIAVATEDEIEDEAIVRALAEFEGIGRRFQQLGSFA 337

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T+     +  DY H  + +   +K  R      R+++++                  L  
Sbjct: 338 TSKGEVMLVDDYGHHPSEVTATIKAARLGWPDKRLVMIYQPHRYSRTRDLYDDFVEVLSQ 397

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM---------LNKQD 460
            D  I+ D     E P  I       +   I +  +++ I  A            L   D
Sbjct: 398 VDSLILLDVYAAGEAP--IPGADSRALCRSIRQRGQLDPIFVAGAEPLLSLLPSILQDGD 455

Query: 461 VLVVAGKGH 469
           +L+  G G+
Sbjct: 456 LLLTQGAGN 464


>gi|325923953|ref|ZP_08185543.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
 gi|325545579|gb|EGD16843.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
          Length = 477

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/429 (20%), Positives = 145/429 (33%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    +   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDSDHLENYGNDFSRIQAAFAEFLQRLPFYGLALL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALASKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G          R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVAPETIARALENFAGIGRRFNDLGEVTTSTGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
           P  E P        +   I            +I  +   + ++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADARALARAIRARGRSEPVVVGQISGLAEVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI+ NG
Sbjct: 463 VAQHIINNG 471


>gi|53726037|ref|YP_104093.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|67643628|ref|ZP_00442373.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|121599536|ref|YP_991820.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei SAVP1]
 gi|124384790|ref|YP_001027313.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126449994|ref|YP_001082750.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|251766632|ref|ZP_04819734.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
 gi|254178949|ref|ZP_04885603.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|254202814|ref|ZP_04909177.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|254208156|ref|ZP_04914506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|254357640|ref|ZP_04973914.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|59798163|sp|Q62GS8|MURC_BURMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222963|sp|A3MR64|MURC_BURM7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222964|sp|A2S5U4|MURC_BURM9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222965|sp|A1V0R7|MURC_BURMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52429460|gb|AAU50053.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|121228346|gb|ABM50864.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei SAVP1]
 gi|124292810|gb|ABN02079.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126242864|gb|ABO05957.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|147747061|gb|EDK54138.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|147752050|gb|EDK59117.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|148026704|gb|EDK84789.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|160694863|gb|EDP84871.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|238525007|gb|EEP88437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|243065315|gb|EES47501.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
          Length = 465

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 141/428 (32%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +    G   +F IG   T +       +         ++ 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGMGDFIVAEADESD 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   +                      +  +    TN+  DH+D +    A        F
Sbjct: 166 ASFLN----------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI 293
            + LP    A++  DDA  ++++         V+  G+        + V A   +   T+
Sbjct: 204 TQRLPFYGSAVVCIDDANVRQIVPLISKP---VVRYGFAADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351
             EG++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G  
Sbjct: 261 RREGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-AL 407
                    +  DY H    +   +   R    GR +V+        + +      +  L
Sbjct: 321 AAAGGGAYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 408 DLADIAIVTDDNPRSEDPEKI-------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  ++T+     E P          RA    G    +      E      ++    D
Sbjct: 381 STVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGD 440

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 441 VVITMGAG 448


>gi|332299375|ref|YP_004441296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176438|gb|AEE12128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 461

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 136/365 (37%), Gaps = 41/365 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R  G     ++A+TG++GK++  +++      +GL     G   T           
Sbjct: 96  EFAYRYAGD--SVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGT----------- 142

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 143 --------SLARQVALAPHAYYVIELSSFQLDH--MYQFRAHIAILLNITPDHLDRYDHQ 192

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AKMR+ +   P +       DD   + + +    AG R+    +  K      V
Sbjct: 193 MELYARAKMRITQNQEPTDYFISWIEDDWTQRLLKEPGMGAGRRIF---FSTKASSDDAV 249

Query: 283 CAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A  +  Q+  +++   F+ L     L G+  V NAL       A+G+   ++   LE  
Sbjct: 250 VASSHNGQLRFALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETF 309

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VP R E++ +      I    A   NS    L+++R  T     ++   G D+     
Sbjct: 310 TNVPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPT-----ILILGGTDKGNDYN 364

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +M  +   +  +  +T D+       K+       IP   E  +  +AI  A +M    
Sbjct: 365 DLMELVKEKVVGLIYLTTDS------AKLHRSFDSVIPRHEEVTSMRDAIAAARQMATAG 418

Query: 460 DVLVV 464
           D +++
Sbjct: 419 DTVLL 423


>gi|17232557|ref|NP_489105.1| UDP-N-acetylmuramate--L-alanine ligase [Nostoc sp. PCC 7120]
 gi|25008804|sp|Q8YM75|MURC_ANASP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17134203|dbj|BAB76764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nostoc sp. PCC
           7120]
          Length = 494

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 135/414 (32%), Gaps = 50/414 (12%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +    ++ A I    PIL   +    L      +   H    +AV GT GK++
Sbjct: 96  VVCSTAINSNNLEYQAAIELGCPILHRSDVLAAL------INDYHS---VAVAGTHGKTT 146

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    I                    +   +  + L          +
Sbjct: 147 TSSMIGYMLLEAGLDPTII----------------VGGEVNAWEGNARLGQSSYLVAEAD 190

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++ T +   +    +F+         I   
Sbjct: 191 ESDGSLVKH-----APEIGIITNIELDHPDHYDTLEEVVD----IFQTFAKGCKTLIGSV 241

Query: 249 DDAYSKEVMKRAH-NAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
           D    +E+++ A  +     ++            +  +    +     +  +GK    L 
Sbjct: 242 DCETVRELLRNASGDRQQPTITYSLHQDTEADYTVTNIDYRADGTTALVWEKGKALGVLK 301

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L     + NAL A  +   +G++   + + +        RFEF G    G     DYA
Sbjct: 302 LKLLSRHNLSNALAAVAVGRLVGLEFGEIAKGIAGFEGARRRFEFRG-EVDGITFIDDYA 360

Query: 364 HTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           H  + +   L   R       R++ +F                 +   AD+ ++TD    
Sbjct: 361 HHPSEIRATLAAARLQARPGQRVVAIFQPHRYSRTLTFLEEFSESFSHADLVVLTDIYSA 420

Query: 422 SEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E        E +  +I    P  + +          ++ L   D+ +  G G+
Sbjct: 421 GEPNLGLISGENLAEKIAQEHPQVVYQPTLSTVCEYLLKNLRPGDLALFLGAGN 474


>gi|270159084|ref|ZP_06187740.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
 gi|269987423|gb|EEZ93678.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
          Length = 458

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 136/418 (32%), Gaps = 49/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+      L+      +G      +AV GT G
Sbjct: 62  KGADVVVRSSAVEWNNPEIVAAREQMIPVIPRA-AMLAELMRFRHG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   SF IG                   + +   L       V  
Sbjct: 115 KTTTTSLVSSVLAEGGLDPSFVIGGKLN--------------SLGINAQLGQSPYFVVEA 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              +AS           +K +    TN+  DH+  ++            F   LP    A
Sbjct: 161 DESDAS--------FLFLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPFYGSA 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE--GKDFD 301
           ++  DD   ++++          L+ G+ +                + T+          
Sbjct: 213 VVCIDDPEVRKILPFIERP---TLTYGFTEEAHYRAIDWTQNELISEFTVIRPKSYSPLK 269

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRI 358
             F  PG   V NAL +  +   +G+D   ++  LEK   V  RF+ +G          +
Sbjct: 270 IQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEKGSALV 329

Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    +   +   R +  + R++ VF         +        L LAD   + D
Sbjct: 330 VDDYGHHPQEILSTIDAFRHVWPNKRLVHVFQPHRYTRTQELQEQFVDVLSLADELFLFD 389

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
                E        E +  +I +          R   ++  ++    + DV+++ G G
Sbjct: 390 IYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERS--LKKNLDQSVKEGDVILIQGAG 445


>gi|167564198|ref|ZP_02357114.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           EO147]
          Length = 464

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 139/427 (32%), Gaps = 49/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARRLGVPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +    G   +F IG   T +                 ++ 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGTGDFIVAEADESD 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   +                      +  +    TN+  DH+D +    A        F
Sbjct: 166 ASFLN----------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI 293
            + LP    A++  DD   ++++         V+  G+        + V A   +   T+
Sbjct: 204 TQRLPFYGSAVVCIDDPNVRQIVPLISRP---VVRYGFAPDAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
             EG++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+    +
Sbjct: 261 LREGREPLPVVLNLPGLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
                   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 321 PVAGGAYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 380

Query: 409 LADIAIVTDDNPRSEDPEKI-------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D  ++T+     E P          RA    G    +      E      ++    DV
Sbjct: 381 TVDALVLTEVYAAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARAGDV 440

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 441 VITMGAG 447


>gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M6190]
 gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis ES14902]
          Length = 445

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 163/418 (38%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ ADD + + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNADDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   + 
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALV 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|66047328|ref|YP_237169.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500775|sp|Q4ZNZ1|MURC_PSEU2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|63258035|gb|AAY39131.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 486

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 142/429 (33%), Gaps = 52/429 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI        GA+ +VVSSA +  +          I VV    + L+      +G     
Sbjct: 65  FIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG----- 118

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +AV GT GK++  S +  +    G   +F IG     +        +          ++
Sbjct: 119 -IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIA 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+  ++            F 
Sbjct: 171 EADESDASFL---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFL 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++          L+ G+ +   I    V         T+ 
Sbjct: 216 HNLPFYGLAVMCIDDPVVREILPLVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVL 272

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
              ++  D    +PG   V N+L    +    G+    +++ L     V  RF+    + 
Sbjct: 273 RRDREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELP 332

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     +  DY H    +  ++  +R      R+++V+                  L  
Sbjct: 333 VDGGHVMLVDDYGHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQD 460
           A++ ++ +  P  E+P  I       +   I +  +++   I   +E+           D
Sbjct: 393 ANVLLLMEVYPAGEEP--IPGADSRNLCHSIRQSGQLDPIYIERGVELAPLVKPLLRAGD 450

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 451 ILLCQGAGD 459


>gi|260576892|ref|ZP_05844875.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
 gi|259020929|gb|EEW24242.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
          Length = 479

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 161/472 (34%), Gaps = 70/472 (14%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           + +Q  + K ++++   R +  G  F    G +         A   G  A+VV S+   +
Sbjct: 36  YRVQGSDAKASKITD--RLVSLGATFF--EGQR---------AANLGEAAVVVISSAIKK 82

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                  +    L V    + L+              +A+ GT GK++  + V  +  + 
Sbjct: 83  GNPELEEARRRQLPVVRRAEMLAELMRLKSN------IAIAGTHGKTTTTTMVATLLDKG 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G     I     I ++  + R      +                  VEA       +RL 
Sbjct: 137 GFDPTVING-GVIHAYGSNARAGEGEWM-----------------VVEADESDGSFNRLP 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  +H+++  T +         F   +P    A+   D A  + ++ R 
Sbjct: 179 AT---IAIVTNIDPEHMEHWGTFENLRKG-FYDFVSNIPFYGLAVCCTDHAEVQALVGRV 234

Query: 261 HNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFD----------FLFPLPGE 309
            +   R+++ G+     +    +          ++++G+  D             P+PG+
Sbjct: 235 TDR--RIVTFGFNAQADVRAINLTYDAGVAHFDVALQGEGPDDTGKIAVIEGCTLPMPGD 292

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL A  +   +G+  A + E L     V  RF  VG    G  I  DY H    +
Sbjct: 293 HNVSNALAAIAVARHLGMKKAEIREALAGFAGVNRRFTRVGV-VNGVTIIDDYGHHPVEI 351

Query: 370 EMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED- 424
             +L+  R  T+G    R+I V                    + AD+  + +     ED 
Sbjct: 352 AAVLRAARQATAGTPGARVIAVHQPHRYTRLHSLFDDFCTCFNEADVVAIAEVYAAGEDP 411

Query: 425 -PEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
            P   R +++ G+     +  R  AI       R   E     D++V  G G
Sbjct: 412 IPGASRDDLVAGLIAHGHRHAR--AILNEDDLERLVREQARPGDMVVCLGAG 461


>gi|197105784|ref|YP_002131161.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
 gi|254766016|sp|B4RFG2|MURC_PHEZH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196479204|gb|ACG78732.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
          Length = 477

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/430 (20%), Positives = 155/430 (36%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + +  GA AIV S+A    +          + +V    +   + A  +  +   
Sbjct: 61  GHD--AKNVE-GAYAIVYSTAVKPDNPEMVEGRARRLPLV----RRAEMLAELMRLQFS- 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  I    GL    +     I+++  + ++     I +    S
Sbjct: 113 --IAVGGTHGKTTTTSMVAAILDAGGLDPTVVNG-GIINAYGTNAKVGAGDWIVVEADES 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +K      TN+  +H+D++   +A   A  + F 
Sbjct: 170 D--------------------GTFLKLKSTVAVVTNIDPEHLDHYGDFEAVKKA-FQDFV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E +P    A +  D    + +  R  N       V  Q + +    +       + ++ +
Sbjct: 209 ENIPFYGFAAVCLDHPEVQAMTARVENRRLVTYGVNPQAE-VRAHNIRMGPEGARFSVVI 267

Query: 296 EGKDF------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + +D       D L P+ G+  V NAL A  +   +G+    + + L     V  RF   
Sbjct: 268 QPRDGGFISFDDLLLPMAGQHNVQNALAAIAVARELGVSPDAIRKGLAAFGGVKRRFTTT 327

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G    G R+  DY H    +  +LK  R ++ G++I V                    + 
Sbjct: 328 GVAG-GVRVVDDYGHHPVEIASVLKAARAVSEGKVIAVVQPHRYTRLRDLFEDFCACFND 386

Query: 410 ADIAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRIE------AIRTAI--EMLNKQ 459
           AD  IV D     E P E +  E ++ G+  +   G+R        A   A+  E  +  
Sbjct: 387 ADTVIVADVYAAGEAPIEGVGKESLVEGLRRY---GHRRVLPLPAPAGLAALVREEAHPG 443

Query: 460 DVLVVAGKGH 469
           D++V+ G G 
Sbjct: 444 DLVVLLGAGD 453


>gi|146299078|ref|YP_001193669.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium johnsoniae
           UW101]
 gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101]
          Length = 822

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 144/410 (35%), Gaps = 24/410 (5%)

Query: 10  DFPELINQLSI-FPMQWRERKINEVSSDSRHIQAG--WIFVAIVGNKEDGHLFIPQAIAQ 66
           +   LI  L+  +     +  ++ +S DSR +Q G   +F+A+ G   D HL+I + I +
Sbjct: 4   NLKSLIPVLNAEWTGSDTDIFVDHISIDSRSLQNGPQTLFIALSGANNDAHLYIAELIEK 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G         +++Q     ++      VV NT K L   A+         I+ +TG++GK
Sbjct: 64  GV------QNFAVQYIPENVKGKANFFVVKNTLKALQELAAYYRDLFDFPIIGLTGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + V  ++  +            P   I    +        P+ +  A++   + G+    
Sbjct: 118 TIVKEWLNFLLS----------PDYNIIRSPKSYNSQVGVPLSVI-AINEKHNLGIFEAG 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S+     +    IK   G  TN+G  H +  +      N K+ LF++          
Sbjct: 167 I--STVNEMVNLEKIIKPNIGVLTNIGSAHDEGFENLTQKINEKLLLFKKSAVIIYQKNE 224

Query: 247 YADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             D        +    N      S       + + K    ++   +    + + F+   P
Sbjct: 225 LVDKCLLDFSAQYPLENRALFSWSFADASADVFILKKETKNDSTTIKYQYKDEIFNLEIP 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
                 + NA+    + +    D  ++   +E L+ V  R E          I   Y+  
Sbjct: 285 FSDSASIENAISCLLVLLHFEYDFTIIQNRMEMLYPVEMRLEVKNGIHNCSLIDDSYSSD 344

Query: 366 SNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             SL++ L  + +        V+             +  K+A  ++D  I
Sbjct: 345 FQSLKIALDFLESQKKNASKAVILSDIFQSGFSNEELYSKVAQLISDNKI 394


>gi|83721549|ref|YP_441667.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|167618582|ref|ZP_02387213.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           Bt4]
 gi|257137836|ref|ZP_05586098.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|109892697|sp|Q2SZI2|MURC_BURTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83655374|gb|ABC39437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia thailandensis
           E264]
          Length = 465

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 138/428 (32%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +    G   +F IG   T +                 ++ 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGTGDFIVAEADESD 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   +                      +  +    TN+  DH+D +    A        F
Sbjct: 166 ASFLN----------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI 293
            + LP    A++  DD   ++++         V+  G+        + V A   +   T+
Sbjct: 204 TQRLPFYGSAVVCIDDPNVRQIVPLISKP---VVRYGFAADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351
             EG++    +  LPG   V NAL A  +   + +    + + L + + V  RF+  G  
Sbjct: 261 LREGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEM 320

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-AL 407
                    +  DY H    +   +   R    GR +V+        + +      +  L
Sbjct: 321 PAAGGGAYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 408 DLADIAIVTDDNPRSEDPEKI-------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  ++T+     E P          RA    G    +      E      ++    D
Sbjct: 381 STVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGD 440

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 441 VVITMGAG 448


>gi|220930459|ref|YP_002507368.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulolyticum
           H10]
 gi|220000787|gb|ACL77388.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulolyticum
           H10]
          Length = 467

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 143/440 (32%), Gaps = 78/440 (17%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILV--------VDNTRKFLSLFASRLYG 111
           A+GAE  +   + ++ D     ++  ++ + P +         V +  + L L   +   
Sbjct: 56  AKGAEIFIGHRSENITDQDLTVYTVAVKEDNPEITRSKELGLPVIDRAELLGLLMKKH-- 113

Query: 112 KHPENILAVTGTSGKS------------SVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 +AV GT GK+            S       I    G     IG  + I +    
Sbjct: 114 ---SFGIAVAGTHGKTTTTSMITTIMLESNTDPTAHI----GGELDCIGGNTRIGN---- 162

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                 S  ++ +A  Y  S    H  +                       N+  DH+DY
Sbjct: 163 ------SEFFITEACEYYGSFLKFHPFM-------------------AVVLNIELDHVDY 197

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--I 277
            +  +   +     F  L+P +   +  ADD  +  V+ +     C +++ G + K    
Sbjct: 198 FRDLEHIKSIFGE-FLALVPNDGYIVACADDENTLSVVSK---KECNIITYGLKNKDAMW 253

Query: 278 HLKKVCAIHNKQ-QVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             K +           +  +G+   +    +PG   V N+L A  +    G     +   
Sbjct: 254 TAKGITYNSMGCASFDVYKKGEKVGNVSLSVPGPHNVNNSLAAIAVAYTCGCSMENIAYG 313

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L +      RFE  G      ++  DYAH  + ++  L   ++    +I  VF       
Sbjct: 314 LSRFGGSHKRFELKGLVDN-IKVIDDYAHHPSEVQATLNAAKSSNHNKIWCVFQPHTYTR 372

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIRAEIIH-----GIPGFIEKGNRIEAI 449
                     +   AD  I+TD     E DP  I + ++           +   +  +  
Sbjct: 373 TKAFLDRFSKSFGEADNIIITDIYAAREKDPGDIHSSMLADRIRENGGNAVYISDFQDIA 432

Query: 450 RTAIEMLNKQDVLVVAGKGH 469
               + +   D+++  G G 
Sbjct: 433 EYLDKKVEPGDLILTMGAGD 452


>gi|139437196|ref|ZP_01771356.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC
           25986]
 gi|133776843|gb|EBA40663.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC
           25986]
          Length = 472

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 144/436 (33%), Gaps = 48/436 (11%)

Query: 58  LFIPQAIAQGA-------EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
            +I Q    G         A +      +   S  I  + P LV            +++ 
Sbjct: 49  RYIRQLTRAGVKVHVGHEAATIDEVKPDVVVVSTAIPESNPELVRARELGIPVWPRAKML 108

Query: 111 GK--HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSP 167
               H    +AV GT GK++ +S    +  R G   SF IG    +  +  + +  +   
Sbjct: 109 SALGHGYTTVAVAGTHGKTTTSSMCATMLDRMGLDPSFLIG--GIVEGYDTNGKNGSGDY 166

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                         V       SS          +       TN+  DH+D++   +   
Sbjct: 167 F-------------VAEADESDSSF-------LFLNPNVVIVTNVEADHLDHYSGIEEIE 206

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIH 286
               + F  L+ ++   I+  +D +   +++ A + G  VLS G+ +   I         
Sbjct: 207 ATFAK-FMSLVGEDGTVIVCGEDPH---LVELAKSTGRHVLSYGFAESNDIVCMHPDVKG 262

Query: 287 NKQQVTISVE-GKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            +    +  E G +        PG   + NA     +   +G D     + L     V  
Sbjct: 263 IQSDFIVRFEDGTEHAVEIKSNPGRHNMLNATAVLTVAHVLGFDIDSAAKALSSFEGVRR 322

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           RF  VG +  G  +  DY H    ++  L    ++    + VVF                
Sbjct: 323 RFTHVG-DIDGITVVDDYGHHPTEIKATLAAASSLGYKHVDVVFQPHRYSRLQALCDDFA 381

Query: 405 IALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEML 456
            A   AD  ++ D     E P      K+ A+ +         +   +R+E  +   +M+
Sbjct: 382 DAFANADKLLLIDVFSAGEMPIPGVTSKMLADTVRAKHPGKEVVYCSSRLELNQELEQMV 441

Query: 457 NKQDVLVVAGKGHETV 472
            + D+L+  G G  T 
Sbjct: 442 GEGDLLLTMGAGDVTT 457


>gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 838

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 167/481 (34%), Gaps = 50/481 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    M      I+ + +DSR +      +F A+   + DG  +I    A+G 
Sbjct: 5   IESITESIGARRMGNAPATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYITDLYARGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN----------TPILVVDNTRKFLSLFASRLYGKHPENI 117
              ++   ++ L D       N             L+V N  K L   A +   +    +
Sbjct: 65  RNFVLSEESFRLMDNGQLTIDNAMQRDDAQSIVNYLIVPNPLKALQKLAEQHRNQFQIPV 124

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK+ V  ++ Q+          I      S  + ++++  P  ++     S L
Sbjct: 125 IGITGSNGKTVVKEWLHQLLS---PERAIIR-----SPRSYNSQIGVPLSVWQMNEQSEL 176

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +           S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+  
Sbjct: 177 AIFEA-----GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNC 231

Query: 238 LPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  I   DD + S  V K   +A     S     + +++ KV    +   ++    
Sbjct: 232 ----DVVIYNGDDEFVSNCVAKSMLSAREIAWSRKDMERPLYISKVEKRDDCTVISYRYL 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D  F  P   +  + N+L     C+ + + +  + E + +L  +  R E     +   
Sbjct: 288 DMDNTFTLPFIDDASIENSLNCLAACLYLMLPAEQITERMARLEPIAMRLEVKEGKNNCL 347

Query: 357 RIYVDYAHTSNSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            I   Y     SL++ L     R+ + G    +            P + +    L     
Sbjct: 348 LINDSYNSDLGSLDIALDFLYRRSQSKGLRRTLVLSDILETGQNTPTLYRQVAQLV---- 403

Query: 415 VTDDNPRS-EDPEKIRAEIIHGIPGF-IEK---GNRIEAIRTAIEMLN---KQDVLVVAG 466
               N R  E    +  EI      F IEK    +    IR AI+      + +++++ G
Sbjct: 404 ----NSRGIERIIGVGNEISSCAARFNIEKTFYPDTAALIR-AIQRGELRLENEIILIKG 458

Query: 467 K 467
            
Sbjct: 459 A 459


>gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510]
 gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510]
          Length = 821

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 166/481 (34%), Gaps = 55/481 (11%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           L       R  +I+ + +DSR +      +F A+   + DGH ++P+   +G    VV  
Sbjct: 12  LGAKRFGDRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVV-- 69

Query: 76  AYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                +  A ++S  +   L + N  K L   A +   +    ++ +TG++GK+ V  ++
Sbjct: 70  ----GELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            Q+               T S  + ++++  P  ++L    + L+           S  G
Sbjct: 126 YQLLS--------PDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEA-----GISEMG 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY- 252
             +     IK   G  TN+G  H +   + Q     K+ LF++        I   D+   
Sbjct: 173 EMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDC----DVIIYDGDNELI 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S  V K    +     S     + + ++ +    +   +     G   +F  P   +  +
Sbjct: 229 SSCVAKSLFTSREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASI 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N+L    + + + +    + E + +L  +  R E     +    I   Y     SL++ 
Sbjct: 289 ENSLHCLAVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIA 348

Query: 373 LKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNPRSEDP 425
           L  +         +  ++     +  Q  + +  ++A        +  I   +  R+   
Sbjct: 349 LDFMSRRSDDKEKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRT--- 405

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              R EI        E            E+L      ++A  G     I+  G +    D
Sbjct: 406 AAARFEIEKYFFRTTE------------ELLESD---LLA--GLRNEVILVKGSRAFHFD 448

Query: 486 C 486
            
Sbjct: 449 R 449


>gi|268318029|ref|YP_003291748.1| Mur ligase middle domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262335563|gb|ACY49360.1| Mur ligase middle domain protein [Rhodothermus marinus DSM 4252]
          Length = 538

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 125/378 (33%), Gaps = 41/378 (10%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK     A+         I+ +TG+ GK+S    + +I         +    +T  S+  
Sbjct: 177 RKARRKLAAH----PNLTIIGITGSYGKTSTKFIIAEILSL------RYQVLATPGSYNT 226

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              +       L      L  +      +     G  +      +   G  T +G  H++
Sbjct: 227 PMGICKVINEQLRPEHQVLVLE------MGIRHPGDIRELCAIARPDIGVVTAVGPMHLE 280

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              + +A    K  L         P ++ ADD     + +RA     RV   G     + 
Sbjct: 281 TMGSIEAIAREKSELVA-CTRPGGPVVLNADDPRVAAMAERARGPVWRVSVEGNPEADLV 339

Query: 279 LKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            + +       +  +  E G +  F   L G   V N L+A  +    G+    +   + 
Sbjct: 340 ARDITYGPEGTRFVVRDETGTEQVFQTRLLGRHNVLNILLALAVGRIFGLRLRQMAHAVA 399

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVVFGCGGD-- 393
           +L  V  R +       G    +D A  SN +     L+ +    +GR IVV     +  
Sbjct: 400 RLRPVEHRLQL---RREGPITVIDDAFNSNPVGARNALEILGQFRTGRRIVVTPGMVELG 456

Query: 394 -RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI------ 446
            R+  +   +G+      D+A++    PR   P      I  G+       +RI      
Sbjct: 457 AREAEENRALGRFMAQHVDLAVLIG--PRRTLP------IQEGLREAGFPEDRIHVFRSL 508

Query: 447 -EAIRTAIEMLNKQDVLV 463
            EA       L   DV++
Sbjct: 509 FEAQDFLKTYLQPGDVVL 526


>gi|163855003|ref|YP_001629301.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella petrii DSM
           12804]
 gi|189028975|sp|A9I4V6|MURC_BORPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163258731|emb|CAP41030.1| UDP-N-acetylmuramate-L-alanine ligase [Bordetella petrii]
          Length = 468

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 92/426 (21%), Positives = 145/426 (34%), Gaps = 56/426 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA AIV S+A +  +          I VV      L+       G      +AV GT G
Sbjct: 63  AGAGAIVTSTAVAGDNPEVIAARAAGIPVVPRAIM-LAELMRLKRG------IAVAGTHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +          + PT  I                L  A +        ++
Sbjct: 116 KTTTTSLVASVLAA-----GDLDPTFVIGGR-------------LTSAGANARLGQGEYI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA     D   L+ +  +    TN+  DH+D +    A   +    F + LP    A+
Sbjct: 158 VVEADES--DASFLNLL-PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKD----- 299
           + ADDA  +E+M         + + G         + V A   + + T+  + +      
Sbjct: 215 LCADDANVREIMPFVSRP---ITTYGLSPDAHVRGENVQADGTRMRFTVQRQDRATALPP 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRG 355
                 LPG   V NAL A  +   +G+    + + L     V  RF    EF    + G
Sbjct: 272 LAIELNLPGLHNVRNALAAVAVATELGVPDEAIAQALASFKGVGRRFTQTGEFPVPAAHG 331

Query: 356 G---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLAD 411
           G    +  DY H    +   L   R     R IV+ F                  L  AD
Sbjct: 332 GGTFTLIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGGAD 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVL 462
             ++T+     E P  + A     +   +    RIE +         +  ++ +   DV+
Sbjct: 392 AVLLTEVYAAGEPP--LVAADGRALARALRVAGRIEPVFVEDVADLPQAVLDFVRDGDVV 449

Query: 463 VVAGKG 468
           VV G G
Sbjct: 450 VVMGAG 455


>gi|206890895|ref|YP_002249131.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742833|gb|ACI21890.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 456

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 147/413 (35%), Gaps = 54/413 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASF 132
            +  FS+ ++ + P ++   +          + A     K+    + V G  GK++  SF
Sbjct: 65  EVVVFSSAVKPDNPEIIKARSLGIPVIPRAEMLAELCRLKYS---ILVAGAHGKTTTTSF 121

Query: 133 VQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +  I   +G     +  G   +I + A+                     QG   V+    
Sbjct: 122 IATILSDAGFDPTIVIGGKLKSIGTNAK-------------------LGQGEFLVAEADE 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S G        +       TN+ R+H+DY +  +    A +  F   +P    +++  + 
Sbjct: 163 SDGSFLK----LSPAVSVITNIDREHLDYFKNLKRIKKAFLE-FANKVPFYGVSVLCREC 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
            + ++++        R ++ G+ +      K +    +K         K    F   +PG
Sbjct: 218 RHIRDLIPHLTR---RYVTYGFDEASDFCAKNIEYSSSKVLFDAFFRNKFLGRFAITVPG 274

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    +   + I    V E LE    +  RFEF G    G + Y DY H    
Sbjct: 275 NHNVLNALATIAVAKELSIPIEKVRESLENFTGISRRFEFKGEK-NGVKFYDDYGHHPTE 333

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM----GKIALDLADIAIVTDDNPRSED 424
           ++ ++K    +   R+ V+F                   K  L   D+  + D    SE 
Sbjct: 334 IKAVIKTALWLKPQRLCVIFQPHRYTRTRDLMEQFIQVFKTTLRKNDVLFLMDIYAASEP 393

Query: 425 P-EKIRAEIIH------GIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           P E + AEI++      G+   I   +  E I+   +  L + D++   G G 
Sbjct: 394 PIEGVSAEILYEKLKNVGV-NVIFNPD-KEDIKIDILRELKEGDLVFTIGAGD 444


>gi|150004319|ref|YP_001299063.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides vulgatus ATCC 8482]
 gi|149932743|gb|ABR39441.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides vulgatus ATCC 8482]
          Length = 821

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 166/481 (34%), Gaps = 55/481 (11%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           L       R  +I+ + +DSR +      +F A+   + DGH ++P+   +G    VV  
Sbjct: 12  LGAKRFGDRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVV-- 69

Query: 76  AYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                +  A ++S  +   L + N  K L   A +   +    ++ +TG++GK+ V  ++
Sbjct: 70  ----GELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            Q+               T S  + ++++  P  ++L    + L+           S  G
Sbjct: 126 YQLLS--------PDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEA-----GISEMG 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY- 252
             +     IK   G  TN+G  H +   + Q     K+ LF++        I   D+   
Sbjct: 173 EMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDC----DVIIYDGDNELI 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S  V K    +     S     + + ++ +    +   +     G   +F  P   +  +
Sbjct: 229 SSCVAKSLFTSREIAWSKKDNERPLFIESIQKGAHATTIKYRYLGMPNEFSIPFIDDASI 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N+L    + + + +    + E + +L  +  R E     +    I   Y     SL++ 
Sbjct: 289 ENSLHCLAVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIA 348

Query: 373 LKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNPRSEDP 425
           L  +         +  ++     +  Q  + +  ++A        +  I   +  R+   
Sbjct: 349 LDFMSRRSDDKGKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRT--- 405

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              R EI        E            E+L      ++A  G     I+  G +    D
Sbjct: 406 AAARFEIEKYFFRTTE------------ELLESD---LLA--GLRNEVILVKGSRAFHFD 448

Query: 486 C 486
            
Sbjct: 449 R 449


>gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36]
 gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36]
          Length = 841

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/484 (18%), Positives = 168/484 (34%), Gaps = 53/484 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +      I+ + +DSR +      +F A+   + DG  +I    A+G 
Sbjct: 5   IESITESIGARRVGNVPATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYIADLYARGV 64

Query: 69  EAIVVSSA--YSLQDFSATIRSN------------TPILVVDNTRKFLSLFASRLYGKHP 114
              V+S      ++     I ++               L+V N  K L   A +   +  
Sbjct: 65  RNFVLSEESFRLIEHGELKIDNDAQQPAIHFQSSTVNYLIVSNPLKALQKLAEQHRNRFQ 124

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK+ V  ++ Q+          I      S  + ++++  P  ++     
Sbjct: 125 IPVIGITGSNGKTVVKEWLHQLLS---PERAIIR-----SPRSYNSQIGVPLSVWQMNEQ 176

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S L+           S  G  +   + IK   G  TN+G  H +   + Q     K+ LF
Sbjct: 177 SELAIFEA-----GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLMLF 231

Query: 235 EELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +         I   DD + S  V K   +A     S     + +++ KV    +   ++ 
Sbjct: 232 KNC----DVVIYNGDDEFVSNCVAKSMLSAREIAWSRKDMERPLYISKVEKQDDCTVISY 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                D  F  P   +  + N+L     C+ + + +  + E + KL  +  R E     +
Sbjct: 288 RYLDMDNTFTLPFIDDASIENSLNCLAACLYLMLPAERITERMAKLEPIAMRLEVKEGKN 347

Query: 354 RGGRIYVDYAHTSNSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
               I   Y     SL++ L     R+ + G    +            P + +    L  
Sbjct: 348 NCLLINDSYNSDLGSLDIALDFLYRRSQSKGLRRTLILSDILETGQNTPTLYRQVAQLV- 406

Query: 412 IAIVTDDNPRS-EDPEKIRAEIIHGIPGF-IEK---GNRIEAIRTAIEMLN---KQDVLV 463
                  N R  E    +  EI      F IEK    +    IRT I+      + ++++
Sbjct: 407 -------NSRGIERIIGVGNEISSCAARFNIEKTFYPDTAALIRT-IQRGELRLENEIIL 458

Query: 464 VAGK 467
           + G 
Sbjct: 459 IKGA 462


>gi|254292770|ref|YP_003058793.1| UDP-N-acetylmuramate--L-alanine ligase [Hirschia baltica ATCC
           49814]
 gi|254041301|gb|ACT58096.1| UDP-N-acetylmuramate/alanine ligase [Hirschia baltica ATCC 49814]
          Length = 474

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 138/441 (31%), Gaps = 54/441 (12%)

Query: 50  VGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G +   GH    + +A  A A+++SSA    +          I VV        L   +
Sbjct: 53  KGARIFIGHE--AENVAN-AGAVIISSAIKAGNPEVDAARAAGIPVVRRANMLAELVRMK 109

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    + V GT GK++  + V  +   + +    I     ++++  + +      +
Sbjct: 110 W-------TVCVAGTHGKTTTTTMVSSLLDAADIDPTVING-GIVNAYGSNAKAGAGDWM 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L    S                          +   A   TN+  +H++++ + +    
Sbjct: 162 VLEADESD--------------------GTFTKLSPTAAIVTNIDPEHMEHYGSMENLRA 201

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A    F E +P    A++  D    + +  R  +          Q   +    +      
Sbjct: 202 A-FDTFVENIPFYGFAVLCTDHPEVQALASRIVDRRRITYGFNRQAD-VRAVNLRTDLKG 259

Query: 289 QQVTIS-------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               I+                 P+ G+  V NAL A  + + +G     +L  L     
Sbjct: 260 AHFDIALRRPGSATPRMIKGATLPMAGDHNVQNALAAVTVALELGASDDQILAGLSGFGG 319

Query: 342 VPGRFEFVGTNS-----RGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRD 395
           V  RF   G           RI  DY H    +E +LK  R++   G +I V        
Sbjct: 320 VKRRFTPAGEWEIEAGKEPVRIIDDYGHHPVEIEAVLKAARSMQGQGGVIAVAQPHRYSR 379

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI 449
                       D+ADI ++       E P      E +   I       +     +EA+
Sbjct: 380 LNDLFSEFSTCFDMADIVLIPPVYEAGETPIEGINHETLVKSIRQHGHKDVGILESLEAL 439

Query: 450 RTAIEM-LNKQDVLVVAGKGH 469
             AI+      D++V  G G 
Sbjct: 440 PEAIKAYAKPGDMVVCLGAGD 460


>gi|238019066|ref|ZP_04599492.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
 gi|237864321|gb|EEP65611.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
          Length = 460

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 149/436 (34%), Gaps = 61/436 (13%)

Query: 51  GNKED-GH--LFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++      G +A+V S+A    +    A       IL   +  K +   
Sbjct: 50  GATVHIGHNKEYV-----NGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     + +AV G  GK+S  S + QI            PT  I       + ++ 
Sbjct: 105 ---------TDGIAVAGAHGKTSTTSMIGQIL-----VEADADPTVIIGGEVDYLKGSSC 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   +    S G                    ++      TN+  DH+D+++T   
Sbjct: 151 LGKGHFSVVEADESDGSFLK----------------LRPHTIVITNIEDDHMDHYKTMDN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP+   AI+  D+   + +M R +      ++ G      ++ K    
Sbjct: 195 LLNAFCE-FVETLPESGKAIVCGDNENIRYIMSRVNRNF---ITYGLSDNNDYVAKNIHY 250

Query: 286 HNKQQV-TISVEGKDFD-FLFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHLEKLHVV 342
            +   V  +  +G + +     +PGE  V N+L A  +     G+++ ++ + L K    
Sbjct: 251 VDSTLVYDVYHKGVNIERIRLRVPGEHNVLNSLAAFIVAHDCCGVETRIITKGLGKFIGA 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RFE  G  + G  +  DYAH    ++  LK  + +   R+I VF              
Sbjct: 311 KRRFETKGHVA-GVWVVDDYAHHPTEIKATLKAAKELEKHRVICVFQPHRFTRTSLLKDE 369

Query: 403 GKIALDLADIAIVTDDNPRSED----------PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
              A   AD   +TD     ED          P  I+A     +       +  E +   
Sbjct: 370 FATAFTNADEVYMTDIYSSGEDPIPGIDGHTIPNAIKAATGQDVNYVPSVDDLPEVLAKV 429

Query: 453 IEMLNKQDVLVVAGKG 468
           +      D+++  G G
Sbjct: 430 V---RPNDLVITMGAG 442


>gi|329944587|ref|ZP_08292727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530140|gb|EGF57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 486

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 93/462 (20%), Positives = 160/462 (34%), Gaps = 36/462 (7%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ--- 80
             +  +   V +DSR    G +FVA+ G + DGH  +  A A GA   +VS   + +   
Sbjct: 22  GPDAPVTGPVVTDSRLATEGALFVAVHGERTDGHAHLGSAGALGAVGAIVSDLEAARSGL 81

Query: 81  ---DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSS 128
              +   T   +  +++V++T   L   A                   ++A+TG+ GK++
Sbjct: 82  IQGERGETEDPSMGLVLVEDTVTALGALARTHLAGLRRTAADRGERLTVVAMTGSVGKTT 141

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
                +Q+   SG +       +              S  YL              + + 
Sbjct: 142 TKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYL-------------VLEMG 188

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS  G   +  D   L       +G  H+    + +    AK  +   LLP E  AI+ A
Sbjct: 189 ASGPGHITYLTDIAPLDVAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLLP-EGVAILNA 247

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDA +  +   A        + G        + V     +    + + G D      L  
Sbjct: 248 DDARAAAMAGLAPAQVLTFSAQGGPADLRAERIVLDEAARSAFDLHLPGLDGPRRVQLAV 307

Query: 309 --EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
                V NAL AAGL +A G++  L+ E L  + +       V   S    +  D Y   
Sbjct: 308 AGAHNVANALAAAGLALAAGLEPELIAERLGSVSIESPHRMDVSELSGDLLLIDDSYNAN 367

Query: 366 SNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +S+   L  +  +  G R +VV     +  +       +     A+          S  
Sbjct: 368 IDSMTAALAALPALAGGRRRVVVVSEMLELGESSAADHARTGELAAEAGAAMLIGIGS-T 426

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E + A    G+   +   +   AI     +L+  D ++V G
Sbjct: 427 QEALDAAGARGV-EVVGFDDAAAAISQIDALLSDGDAVLVKG 467


>gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 961-5945]
 gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis G2136]
          Length = 445

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 163/418 (38%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ +DD + + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPRNELLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIG--KKNGVVFIDDSKGTN-VGATAAAITGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++ A       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|162148957|ref|YP_001603418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787534|emb|CAP57130.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 149/448 (33%), Gaps = 37/448 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  VS D+R +  G +F+A+ G   DGH  +  A+ QGA A ++     L     T  
Sbjct: 24  VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAALDQGAAAAMIHDPTVL----GTDS 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  +L V +T   L+        +    ++AVTG+ GK++    ++      G +    
Sbjct: 80  DDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKTTTKEMLRLALGAIGPT---- 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIA 206
                          +  +   +   L+ L       V     +H G        ++ + 
Sbjct: 136 ----------HCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAVMVRPLV 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +   H+ +  + +A    K  L   L P    AI+  D        ++A  A   
Sbjct: 186 ALVTTIAGAHLGHMGSLEAIAREKSDLIATL-PPAGIAIVPDDATGQPIFAEQAARARAT 244

Query: 267 VLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +   G +      +  V         T++++G+        PG   V NA  A     A+
Sbjct: 245 LWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATALAAVAAL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
           G D A     L       GR            +  + Y  +  S+   L  +  + + R 
Sbjct: 305 GADIATAATALADFRPGAGRGALKPILGGRAALLDESYNASVLSVRSSLAVLGLLPATRR 364

Query: 385 IVVFGCGGDRDQGKRPIMG---KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           + V G   +     R          L  AD+   +  +       K   +++        
Sbjct: 365 MAVLGDIRELGAFARAEHESLLSAVLAHADLVFCSGPD------MKYLFDLLPPSRRGAW 418

Query: 442 KGNRIE-A--IRTAIEMLNKQDVLVVAG 466
             +    A  +R A+      DV++V G
Sbjct: 419 APDAASLAPLVRDAVAQ---DDVILVKG 443


>gi|124265656|ref|YP_001019660.1| UDP-N-acetylmuramate--L-alanine ligase [Methylibium petroleiphilum
           PM1]
 gi|166224702|sp|A2SCY6|MURC_METPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|124258431|gb|ABM93425.1| UDP-N-acetylmuramate--L-alanine ligase [Methylibium petroleiphilum
           PM1]
          Length = 469

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 139/431 (32%), Gaps = 52/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GAEA+V S+A    +       +  + VV      L+       G    
Sbjct: 56  GHD---AAHIAGAEAVVTSTAVKGDNPEVIAARSRRVPVVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   +GL      PT  I                L  A +
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEAGLD-----PTFVIGGR-------------LNSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA     D   L+ +  +    TN+  DH+D +             F 
Sbjct: 148 NSRLGAGDYIVVEADES--DASFLNLL-PVLSVVTNIDADHMDTYGHDLGRLKHAFLEFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AII  DD   + ++         V+S G+                 Q+  + 
Sbjct: 205 HRMPFYGAAIICGDDPGVRSIIPMISRP---VVSYGFGEDAQIRAVDVLALPGGQMRFTA 261

Query: 296 EGK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + +      D      LPG   V NAL    +   + +  A V + L     V  RF+  
Sbjct: 262 QRRNGVVMPDLPITLNLPGRHNVLNALAVIAVAAELELPDAPVQKALAAFDGVGRRFQRY 321

Query: 350 GT----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGK 404
           G           +  DY H    +  ++   R    GR +V+ F                
Sbjct: 322 GELPTPAGGRFTLIDDYGHHPVEMAAVIAAARGAFPGRRLVIAFQPHRYTRTRDCFEDFV 381

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLN 457
             +  AD  ++ +     E P        +   +  G        + I A+  AI + + 
Sbjct: 382 KVMGGADAVLLGEVYAAGEAPIVAADGRALARALRVGGKLEPVFVDEIAAMPQAIADNVQ 441

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 442 DGDVVITMGAG 452


>gi|222149135|ref|YP_002550092.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium vitis S4]
 gi|254763734|sp|B9JY53|MURC_AGRVS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221736120|gb|ACM37083.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium vitis S4]
          Length = 471

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/419 (19%), Positives = 146/419 (34%), Gaps = 51/419 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELVAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + + +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVAALLE-AGQLDPTVINGGIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE----GKDFDF 302
            D    + ++ R  +   +V++ G      +    V     K    + +     G+ F F
Sbjct: 218 LDHPEVQALVGRIEDR--KVVTYGENPQADVRFFNVRNEGTKSIFDVEIRRRRTGRVFSF 275

Query: 303 ---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   + NA  A  +   + I    + + L     V  RF   GT   G +++
Sbjct: 276 KDLTLPMPGRHNISNACAAIAVANRLDISEEAIRKGLSTFGGVKRRFTLTGTW-NGVQVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +LK  R    GRII V                    + AD  +++   
Sbjct: 335 DDYGHHPVEIKAVLKAARESCKGRIIAVHQPHRFSRLSSLFEDFANCFNDADSILLSPVY 394

Query: 420 PRSEDP------EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              EDP      E + + I  G      ++   +++  I + I      D +V+ G G+
Sbjct: 395 AAGEDPIEGIDSEALVSRIRSGGHRDVRYLASPDQLAGIISTI--AQPGDFVVLLGAGN 451


>gi|167464916|ref|ZP_02330005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 420

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 145/433 (33%), Gaps = 35/433 (8%)

Query: 48  AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            + GN  DGH  +             ++A   +        +  ++ VD+  K L   + 
Sbjct: 1   PLPGNHIDGHEHVAA------ALSKEAAAAFWKRGYPNPPEDAVLIFVDDPLKALQRLSR 54

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           +   +    I+ +TG++GK++    V  +           G T  +     +       P
Sbjct: 55  QYREQCGAKIIGITGSNGKTTTKDLVASVL----------GTTYRVHKTQGNLNNHIGLP 104

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L   L       V  + +  S  G  +   +  +      T +G  H+    +++   
Sbjct: 105 LTL---LQIGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEIA 161

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIH 286
            AK  +   L       I   D+     V+         R +S G +           I 
Sbjct: 162 RAKTEILGGL-QDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNNIYPVDIQIG 220

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N    +  ++  D +F  PL G   V NAL A      + +    + + L  + +   R 
Sbjct: 221 NDGS-SFRLQDSDTEFYIPLLGLHNVMNALAAVTAGRELEVSDEKIAQGLRDVQLSGMRI 279

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIM 402
           E     S    +   Y  +  + + +L  ++ +       VV       G+ ++     +
Sbjct: 280 EKRKAESGFTVLNDAYNASPAATKAVLSLMKQLKGYRHKYVVLADMLELGELEEQFHREI 339

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLN 457
           G IA +LA+   ++           I  E     P      F +K     A++  I   +
Sbjct: 340 GGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYWFEDKQAMANALKEVI---H 396

Query: 458 KQDVLVV-AGKGH 469
            +DV++V A +G 
Sbjct: 397 PEDVVLVKASRGM 409


>gi|73542662|ref|YP_297182.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
 gi|109892727|sp|Q46WZ5|MURC_RALEJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72120075|gb|AAZ62338.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
          Length = 475

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 141/433 (32%), Gaps = 53/433 (12%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            GH     A   GA A+VVS+A S  +       +  I VV      L+       G   
Sbjct: 55  HGHD---AANIAGANAVVVSTAVSGDNPEVLAARSKRIPVVPRAVM-LAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +    GL    +     ++S   + RL T         +
Sbjct: 108 ---VAIAGTHGKTTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIV 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + ++               +  +    TN+  DH+D +    A        F
Sbjct: 159 AEADESDASFLN---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI 293
            + LP    A++  DD   +E++         V+  G+            A+  +   T+
Sbjct: 204 TQRLPFYGIAVLCVDDPNVREILPFVSKP---VVRYGFAEDAQIRAVNARAVDGQMHFTV 260

Query: 294 --SVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              + G      D +  LPG   V NAL A  +   + +  A +++ L + H V  RF+ 
Sbjct: 261 LRHLNGHAEPPLDVVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQR 320

Query: 349 VGT-----NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIM 402
            G       +    +  DY H    +   L   R      R+++ F              
Sbjct: 321 YGEVATADGTGTFTLVDDYGHHPVEMAATLSAARGAFPGRRLVLAFQPHRFTRTRDCFED 380

Query: 403 GKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               L   D  ++ +     E P          RA  +      +      E  +  +  
Sbjct: 381 FVKVLGTVDALLLAEVYAAGEAPIVAADGRALTRALRVAAKVEPVFVEQMEEMPQAIMNA 440

Query: 456 LNKQDVLVVAGKG 468
               DV+V  G G
Sbjct: 441 ARPGDVVVTMGAG 453


>gi|319944697|ref|ZP_08018961.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
 gi|319741946|gb|EFV94369.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
          Length = 489

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 157/448 (35%), Gaps = 64/448 (14%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G K   GH    + +   A+ +VVS+A    D     R+    + V      L+      
Sbjct: 50  GAKVHVGHQ--AEHVED-ADCVVVSTAVRA-DNPEVRRARARRVPVVPRALMLAELMKLK 105

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G      +A+ GT GK++  S V  I  ++GL    +     ++S   + RL +     
Sbjct: 106 QG------VAIAGTHGKTTTTSLVASILAKAGLDPTFV-IGGRLNSAGVNARLGSGD--- 155

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                         ++ VEA     D   L+ +  +  + TN+  DH+D +    A    
Sbjct: 156 --------------YIVVEADES--DASFLNLL-PMIAAVTNIDADHMDTYGHDMARLKQ 198

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
               F   LP    A++  DD + +E++          ++ G  +   +    V A  ++
Sbjct: 199 AFVDFLNRLPFYGSAVLCLDDPHVREIVPFVSKP---TITYGLGEDAQVRAVDVRAEGDR 255

Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               +  E +   +    L GE  V NAL A  +   +G+ +  ++  L +   V  RFE
Sbjct: 256 MHFQVLRENEPPLEVSLALSGEHNVRNALAAIAIATELGVKAEAIVAALAEFRGVGRRFE 315

Query: 348 FVGTNSRG-------------------GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVV 387
             G                          +  DY H    +E  L+ +R    + R+++ 
Sbjct: 316 RYGEVPVPVREGREGAQAGQTAAASGTFTLIDDYGHHPVEIEATLRAVRGAFPTRRLVLA 375

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFI 440
           F                  L +AD  I+T+     E P         +RA  +      +
Sbjct: 376 FQPHRYSRTRDLFEDFVRVLGMADQLILTEVYAAGEPPIVAADGRALVRAVRLASQRDPL 435

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +  E   T + ++   DV++  G G
Sbjct: 436 FVADVAELPTTVLGLVQPGDVVITMGAG 463


>gi|255525853|ref|ZP_05392782.1| cyanophycin synthetase [Clostridium carboxidivorans P7]
 gi|255510496|gb|EET86807.1| cyanophycin synthetase [Clostridium carboxidivorans P7]
          Length = 871

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 133/358 (37%), Gaps = 31/358 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +   +G   + +G T+T   +  +  +          A   L ++ +    +E + 
Sbjct: 493 LIGHVMTLAG---YNVGMTTTGGIYVDNKCIEKGDTTGYNSARVILGNKEIDAAVLETAR 549

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G  TN+  DH+  D  +T +     K  L  E +  +   +I AD
Sbjct: 550 GGIIRKGLAYDLADVGVITNITEDHLGIDGIETIEDLAYVKS-LVAEAVKDDGYVVINAD 608

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-----------FIHLKKVCAIHNKQQVTISVEGK 298
           +  S +++ R  +         Y                  +    +  +++V   V+ +
Sbjct: 609 NPVSLKILDRTKSNIIMFSKNKYNPALVKNIKQGGCGIYTNEGTIYVEKQEKVVPMVKIQ 668

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
           D          + + NA+ A    I + I  +++ + L   +      PGRF     N  
Sbjct: 669 DVMITLNGKLTYNIENAMAACAALIGLNIKYSVIRKGLTSFYGDENYNPGRFNMYEIN-- 726

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G ++ +DY H     + ++   + I   R+I V G  GDR       +G+I+    D   
Sbjct: 727 GVKVVLDYGHNIEGYKAVINGAKEIKHKRLIGVIGVPGDRTNSSTEYIGEISGKSFDYIY 786

Query: 415 VTDD-NPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +D + R     +I   I  G+              +  EA++ AIE   + D++++
Sbjct: 787 IKEDKDRRGRKVGEIADIIKKGVVNSGFNERKINVILDEKEALKKAIEDSVEGDLIII 844


>gi|325925686|ref|ZP_08187064.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
 gi|325543902|gb|EGD15307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
          Length = 477

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/429 (21%), Positives = 146/429 (34%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G     +    R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTSSGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
           P  E P        +   I            +I  +   + ++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI+ NG
Sbjct: 463 VAQHIINNG 471


>gi|228469391|ref|ZP_04054405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
 gi|228309075|gb|EEK17705.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
          Length = 461

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 131/363 (36%), Gaps = 37/363 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R  G     ++A+TG++GK++  +++      +GL     G   T           
Sbjct: 96  EFAYRYAGD--SMMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGT----------- 142

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 143 --------SLARQVALAPHAYYVIELSSFQLDH--MYQFRAHIAILLNITPDHLDRYDHK 192

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AKMR+ +   P +       DD +++ ++K       R +    +G        
Sbjct: 193 MELYARAKMRITQNQQPTDYFISWIEDD-WTQRLLKEPGMGAGRRIFFSTEGSSDDAVVA 251

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            +   +    +     +  +    L G+  V NAL       A+GI   ++   LE    
Sbjct: 252 SSHDGQLCFALQEPVLEMPESALALSGKHNVQNALAVGCAAQALGIKPEVIRALLETFTN 311

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R E++ +      I    A   NS    L+++R  T     ++   G D+      +
Sbjct: 312 VPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPT-----ILILGGTDKGNDYNDL 366

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           M  +   +  +  +T D+       K+       IP   E  +  +AI  A +M    D 
Sbjct: 367 MDLVKEKVVGLIYMTTDS------AKLHRSFDSVIPRHEEVTSMRDAIAAARQMAQAGDT 420

Query: 462 LVV 464
           +++
Sbjct: 421 VLL 423


>gi|187479349|ref|YP_787374.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella avium 197N]
 gi|109892693|sp|Q2KVG1|MURC_BORA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115423936|emb|CAJ50488.1| UDP-N-acetylmuramate--alanine ligase [Bordetella avium 197N]
          Length = 468

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 94/433 (21%), Positives = 148/433 (34%), Gaps = 56/433 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A      A+AIV S+A +  +          I VV      L+       G      
Sbjct: 55  IGHAAENVADADAIVTSTAVAGDNPEVIAARLARIPVVPRAVM-LAELMRLKRG------ 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S V  +    GL      PT  I                        
Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGGRLNSAGANAQ------------ 150

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG   V     S     + L     +    TN+  DH+D +    A   +    F + 
Sbjct: 151 LGQGEFIVVEADESDASFLNLL----PVMAIITNIDADHMDTYGHDVARLKSAFIEFTQR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
           LP    A++ ADDA  +E+M         + + G         + V A   + + ++  +
Sbjct: 207 LPFYGSAVLCADDANVREIMPFVSRP---ITTYGLSSDAQVRAENVQADGTRMRFSVRRQ 263

Query: 297 GKD-----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----E 347
           G++      +    LPG   V NAL A  +   +G+  A + + L     V  RF    E
Sbjct: 264 GREQDLPTLEVELNLPGLHNVRNALAAIAVASELGVADAAICQALAGFKGVGRRFTQWGE 323

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMG 403
           F    ++GG    +  DY H    +   L   R     R IV+ F               
Sbjct: 324 FPVAEAQGGGRYSVIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDF 383

Query: 404 KIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EM 455
              L  AD  ++T+     E P          RA  + G    +   + + A+  A+ + 
Sbjct: 384 VRVLGTADAVLLTEVYAAGEAPLVAADGRALARALRVAGKVEPLFVED-VAALPQAVRDF 442

Query: 456 LNKQDVLVVAGKG 468
           +   DVL++ G G
Sbjct: 443 MRDGDVLILMGAG 455


>gi|229220794|ref|YP_208580.3| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA
           1090]
 gi|229597261|ref|YP_002002446.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|260439879|ref|ZP_05793695.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|109892712|sp|Q5F6L9|MURC_NEIG1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 468

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 63  NGADVVVASTAVKKENPEVVAALERQIPVIPRALM-LAELMRFRDG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 116 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 157

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 158 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 214 FLCVDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 271 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 330

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 331 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 390

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  + A     +   I    ++E I         +  + +L   DV++ 
Sbjct: 391 VLTEVYAAGEEP--VAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVLN 448

Query: 465 AGKG 468
            G G
Sbjct: 449 MGAG 452


>gi|327399129|ref|YP_004339998.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
 gi|327181758|gb|AEA33939.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
          Length = 460

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 153/437 (35%), Gaps = 47/437 (10%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDN----- 97
           I G+  + + ++ +   QG +  +      +     L   S+ ++++   L+  +     
Sbjct: 36  ITGSDVEENSYVEKLKKQGVKVYLGHSLSNIEEDVDLVVVSSAVKNDNIELIQADKLNIP 95

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           T K   L A  +      N +AV G+ GK++  S    + + +      + PT+ I    
Sbjct: 96  TIKRYQLLAHLVNN---SNSIAVAGSHGKTTTTSLSASLLKNA-----NLDPTAIIGGKL 147

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           ++                 +      ++ VEA         L       G  TN+  DH+
Sbjct: 148 RNINNN-------------VIIGKCNYLIVEADESDGGFLLL---NPKIGLLTNIDNDHL 191

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
            ++   +    A    F + +      II  DD   K+    +        S+  +   +
Sbjct: 192 GFYGNFENEKVA----FYDFMDNSEKLIINIDDPIIKQWKNLSKRQNLLTYSIKSKKADV 247

Query: 278 HLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           +   +         +I    K  +     + G   + NAL    L   + I   ++ + L
Sbjct: 248 YAYDIQTNAAYSIFSIKTPTKKIEQIKLKIIGTHNISNALAVVCLAEILEIGEDIIRKTL 307

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +   V  RF +VG N R  ++Y DYAH    +   LK  + I+   I  VF        
Sbjct: 308 SEFEGVDRRFTYVG-NYRNLKVYDDYAHHPTEIRETLKAAKLISKN-IYAVFQPHRFSRT 365

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRT 451
                    +   A    V D  P SE P      +I A+ ++ I       N  + ++ 
Sbjct: 366 AYLMDEFAGSFKDAKRVFVLDIFPASESPIDGIDSQILAQKVNEISANAVYINNEDMLKK 425

Query: 452 AIEMLNKQDVLVVAGKG 468
            ++ + +  V+V  G G
Sbjct: 426 HLDQIEEDGVVVALGAG 442


>gi|253998173|ref|YP_003050236.1| UDP-N-acetylmuramate--L-alanine ligase [Methylovorus sp. SIP3-4]
 gi|313200242|ref|YP_004038900.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
 gi|253984852|gb|ACT49709.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. SIP3-4]
 gi|312439558|gb|ADQ83664.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
          Length = 465

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 136/406 (33%), Gaps = 51/406 (12%)

Query: 80  QDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            +  A   SNTP++     R   L+       G      +AV GT GK++  S +  I  
Sbjct: 79  PEIIAARASNTPVI----PRALMLAELMRFRQG------IAVAGTHGKTTTTSLIASILA 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G+      PT  I                  +  +  ++  +       +        
Sbjct: 129 EAGMD-----PTFVIGG----------------RLEAASANARLGTGEFIVAEADESDAS 167

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +  +    TN+  DH+D +             F + LP    A++  DD   + ++ 
Sbjct: 168 FLHLSPVISVVTNIDADHMDTYGHDFEKLKGAFVEFLQQLPFWGMAVLCIDDPNIRAILP 227

Query: 259 RAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-SVEG--KDFDFLFPLPGEFQVYN 314
                   ++  G+        K V A +     T+  + G   +FD    LPG   V N
Sbjct: 228 SVTKP---IMPYGFSEDARIRGKNVRADNGTMHFTVQRINGVTTEFDVTLNLPGNHYVLN 284

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSLE 370
           AL A  +   + +  A +++ L +   V  RFE  G     N     +  DY H    ++
Sbjct: 285 ALAAIAVASELNVPDAAIIKALREFKGVGRRFERYGEVPARNGGQFTLIDDYGHHPVEMQ 344

Query: 371 MILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP---- 425
            ++   R      R+++ F                  L  AD  +++D  P  E P    
Sbjct: 345 AVIAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVKVLSSADAVLLSDVYPAGEAPIVAA 404

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +RA  + G    +      E     + +    DV++V G G
Sbjct: 405 DGRALVRAIRVAGKVEPLFVETTAELPEAILGVAQDGDVVIVMGAG 450


>gi|326202446|ref|ZP_08192315.1| UDP-N-acetylmuramate/alanine ligase [Clostridium papyrosolvens DSM
           2782]
 gi|325987564|gb|EGD48391.1| UDP-N-acetylmuramate/alanine ligase [Clostridium papyrosolvens DSM
           2782]
          Length = 467

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 141/428 (32%), Gaps = 56/428 (13%)

Query: 66  QGAEAIVVSSA-----YSLQDFSATIRSNTPI--------LVVDNTRKFLSLFASRLYGK 112
           +GAE  +  SA       L  ++  ++ + P         + V +  + L L   +    
Sbjct: 57  KGAEIFIGHSAENINAPDLTVYTVAVKDDNPEMIQSKELGIPVIDRAELLGLLMKKH--- 113

Query: 113 HPENILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                +AV GT GK++  S +  I  + +   +  IG           N     S  ++ 
Sbjct: 114 --SFGIAVAGTHGKTTTTSMITTIMLEANTDPTAHIGGEL---DCIGGNTRIGGSEYFIT 168

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  S    H  +                       N+  DH+DY +  +   +   
Sbjct: 169 EACEYYGSFLKFHPFM-------------------AVVLNIEVDHVDYFRDLEHIKSTFG 209

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ- 290
             F  L+P+    +  ADD  +  V+ +     C +++ G + K          +N    
Sbjct: 210 E-FVALVPRNGYIVACADDENTLSVVSK---RDCNIITYGLKNKDAMWTAKEITYNSMGC 265

Query: 291 --VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               +  EG    D    +PG   V N+L A       G     +   L +      RFE
Sbjct: 266 ASFEVYKEGTKMGDVSLSVPGPHNVSNSLAAIAAAHTCGCSMDNIAYGLSRFGGSHKRFE 325

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G      ++  DYAH  + ++  L   ++    +I  VF                 + 
Sbjct: 326 LKGLVDN-IKVIDDYAHHPSEVQATLNAAKSSDHNKIWCVFQPHTYTRTRAFLDKFSESF 384

Query: 408 DLADIAIVTDDNPRSE-DPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             AD  ++TD     E DP  I ++I+           +   +  +      +     D+
Sbjct: 385 GEADNIVITDIYAAREKDPGDIHSKILADRIRENGGNAVYISDFQDIAEYLDKNAQSGDL 444

Query: 462 LVVAGKGH 469
           ++  G G 
Sbjct: 445 ILTMGAGD 452


>gi|239947811|ref|ZP_04699564.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922087|gb|EER22111.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 479

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 147/436 (33%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      IV+SSA +    +    +    PI+     R+   + A  +  K 
Sbjct: 64  GH--AEQNITN-VSYIVISSAINPNNPEIKEALERKIPII-----RRA-EMLAELMRLKC 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G+ GK++  S V  + + +GL        + I+    +N+ T          
Sbjct: 115 S---VAVSGSHGKTTTTSLVACLFEAAGLC------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++  +    A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYKDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGATIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V   ++   I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKVAEYNK-ASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQHLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            +    ADI  +TD     E+P          +KI     H    F+ + +  +A+   I
Sbjct: 389 MLCFVDADILYITDIYAVGENPIEGITGQSLVDKITKNKHHDKANFLAQLD--DAVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIMMGAGN 462


>gi|297742739|emb|CBI35373.3| unnamed protein product [Vitis vinifera]
          Length = 510

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 151/450 (33%), Gaps = 38/450 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFI-PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           + +D+R ++ G  F AI G   D H FI P+   +G   ++ +      D          
Sbjct: 74  ICTDTRTLEPGQWFFAIRGENFDAHEFITPELGHKGCVGVIGNWVCPNWDKGFVEMGG-- 131

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                 T   L   A+    K    ++ VTG++GK++  + +    +  GL     G  +
Sbjct: 132 -----ETLTSLEKMANYARNKFHGCLVGVTGSAGKTTTRTMIALTLESLGLVHQTHGNEN 186

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                         +  ++   L                  G         +       N
Sbjct: 187 NRIGVCLSLIGIPQNVGFVVLEL-------------GMDRRGEIMELARKARPSIRVILN 233

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++   + +    AK  +  E  P +   ++ ADD     +    H     +    
Sbjct: 234 VGCAHLENFASLEEVAMAKGEILAEAKPGD-VCVLNADDPLVMSL-PVPHGVKKVLFGQR 291

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +       +     +  +V +    +  +F+ P PG     NA   A + +A+G+    
Sbjct: 292 LECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACATAAVAVALGVSLPQ 351

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFG 389
           V   L +   V  R E     + G +I  D Y     S +  ++ ++ I   G+ + + G
Sbjct: 352 VGISLSRFIPVSMRSELEVAKT-GIKIINDVYNANPVSTKAAIELLKNIDCKGKRVAILG 410

Query: 390 CGGDRDQGKRPIMGKIALDLAD-----IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
              +  Q +      +     D     IA+V     R+ +   +  E        +   +
Sbjct: 411 DMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFLRAAENLNLVGE-----RNLLYSPD 465

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                   ++ LN+ DV++V  KG   + +
Sbjct: 466 AESLAFEIVQRLNRNDVILV--KGSRGMQM 493


>gi|121606305|ref|YP_983634.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|166224714|sp|A1VST5|MURC_POLNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120595274|gb|ABM38713.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 478

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 142/435 (32%), Gaps = 61/435 (14%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A A     +A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAAANLVDVDAVVTSTAVHADNPEVLAAREKHIPVVPRALM-LAELMRFKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  +    GL      PT  I                L  A + 
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAEGGLD-----PTFVIGGR-------------LNSAGAN 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  ++ VEA     D   L+ +  +    TN+  DH++ +             F  
Sbjct: 149 AKLGSGDYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFGNLKKAFVDFLR 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
            +P    AI+  DD   ++++       C + S G   +       V A+  +   T   
Sbjct: 206 RMPFYGTAILCTDDPVVRQIV---PEMSCPITSYGLNEEAQVRAINVRAVGAQMHFTAQR 262

Query: 296 EGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  D D +  L G+  V NAL A  + + + +  A V + L     V  RF+  G 
Sbjct: 263 RNGVKLPDLDVVLNLAGQHNVLNALAAIAVAVELNVPDAAVQKALSDFTGVGRRFQSYGE 322

Query: 352 ----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKI 405
               +     +  DY H    +   L   R    GR +V+        R +       K+
Sbjct: 323 LPARDGGRFTVIEDYGHHPVEVAATLSAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVKV 382

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------------KGNRIEAIRTAI 453
               AD  ++ +     E P  I A     +   +               +  +AI   +
Sbjct: 383 ISSHADAVLLAEVYAAGETP--IVAADGRSLARALRVAGKVEPVFVDSIHDMPQAI---V 437

Query: 454 EMLNKQDVLVVAGKG 468
           +     D+++  G G
Sbjct: 438 DAAQDGDIVMCMGAG 452


>gi|225017206|ref|ZP_03706398.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
 gi|224949981|gb|EEG31190.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
          Length = 457

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 135/415 (32%), Gaps = 51/415 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ IV ++A    +        + I  ++     L L   R       + + V+GT G
Sbjct: 70  KGADLIVYTAAIMEDNPELIAAKQSGIPTIERCV-LLGLITERY-----SDCICVSGTHG 123

Query: 126 KSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++  S + QI   +G     +  G   +I  + +                  +  +   
Sbjct: 124 KTTTTSMLTQILLDAGKDPSAVIGGKLKSIEGYGRSGSS------------EVMVCEACE 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              V+   H         +        N+ RDH+DY +T +     K+   +        
Sbjct: 172 F--VDTFLH---------LSPDIAVVLNIDRDHMDYFKTMENL---KLSFEKFCRKATKC 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
            +   DDA S EV  R             Q  +                +  +G+     
Sbjct: 218 ILYNGDDANSAEVAGRVDQRKV-TFGFSDQNDYYPANVQHVDGLHTTFDLMHKGERLTSL 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG+  + NA  A    +  G+    + E L        RFE +G    G  I  DY
Sbjct: 277 NLFVPGDHNILNATAACAAALETGVRPEQLAEGLGNFKGAGRRFELLG-KINGITIVDDY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    +++ L+  +++   ++  V                  AL +AD  ++++     
Sbjct: 336 AHHPAEIKVTLQAAQSLNFNKVWAVHQPFTYSRTAMLLDDFAEALSIADQVVLSEIMGSR 395

Query: 423 ED-----PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E        K  A+ I G    P F E  +        +      D++V  G G 
Sbjct: 396 EKNTYGIYAKDLADKIDGCVWFPTFEEISD------YVLSHAEPGDLVVTLGCGD 444


>gi|53720634|ref|YP_109620.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76808578|ref|YP_334914.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126441898|ref|YP_001060534.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126454974|ref|YP_001067785.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134280221|ref|ZP_01766932.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|167721339|ref|ZP_02404575.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           DM98]
 gi|167896002|ref|ZP_02483404.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           7894]
 gi|167904389|ref|ZP_02491594.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           NCTC 13177]
 gi|217425709|ref|ZP_03457199.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|226199600|ref|ZP_03795156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813918|ref|YP_002898369.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242315936|ref|ZP_04814952.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254180547|ref|ZP_04887145.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|254191011|ref|ZP_04897517.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199124|ref|ZP_04905539.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|254260254|ref|ZP_04951308.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
 gi|254299365|ref|ZP_04966815.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|59798176|sp|Q63QJ8|MURC_BURPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892695|sp|Q3JND9|MURC_BURP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222966|sp|A3NZL4|MURC_BURP0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222967|sp|A3NDW3|MURC_BURP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52211048|emb|CAH37036.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76578031|gb|ABA47506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126221391|gb|ABN84897.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126228616|gb|ABN92156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134248228|gb|EBA48311.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|157809030|gb|EDO86200.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|157938685|gb|EDO94355.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656954|gb|EDS88351.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|184211086|gb|EDU08129.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|217391297|gb|EEC31329.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|225928346|gb|EEH24377.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505140|gb|ACQ97458.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242139175|gb|EES25577.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254218943|gb|EET08327.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
          Length = 465

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 140/428 (32%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +    G   +F IG   T +                 ++ 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGTGDFIVAEADESD 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   +                      +  +    TN+  DH+D +    A        F
Sbjct: 166 ASFLN----------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI 293
            + LP    A++  DDA  ++++         V+  G+        + V A   +   T+
Sbjct: 204 TQRLPFYGSAVVCIDDANVRQIVPLISKP---VVRYGFAADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351
             EG++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G  
Sbjct: 261 RREGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-AL 407
                    +  DY H    +   +   R    GR +V+        + +      +  L
Sbjct: 321 AAAGGGAYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 408 DLADIAIVTDDNPRSEDPEKI-------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  ++T+     E P          RA    G    +      E      ++    D
Sbjct: 381 STVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGD 440

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 441 VVITMGAG 448


>gi|282854262|ref|ZP_06263599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
 gi|282583715|gb|EFB89095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
          Length = 485

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 119/389 (30%), Gaps = 45/389 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L   +   P+    +   +V   +R +  G +F+A+ G + DGH F   A   GA 
Sbjct: 5   DVATLAQWVEAAPVNDSAQVGPDVVIGTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGK 126
           A++V+     Q          P LVVD+ +  LS  A  +     +     +AVTG+SGK
Sbjct: 65  AVLVTRRTDAQ---------LPHLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + QI +  G +   +G  +           +  +  +L                
Sbjct: 116 TSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSE------------- 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G        +        N+G  H+    +++    AK  + E L   +  A++
Sbjct: 163 MGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSV-DGWAVL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D     +  R                         +     +  + + ++  +  + 
Sbjct: 222 NAADTLVAGMAPRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGES 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAI-----------GIDSALVLEHLEKLHVVPGR--FEFV 349
            +  P       A   A    A             ID   V    E L     R      
Sbjct: 282 TWRSPVRLMTMGAYQVANAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQ 341

Query: 350 GTNSRGGRIY--VDYAHTSNSLEMILKNI 376
                 G +     Y    +S+   L  +
Sbjct: 342 LRERADGLVLVEDCYNANPDSMAASLTAM 370


>gi|70732383|ref|YP_262139.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf-5]
 gi|109892722|sp|Q4K6J4|MURC_PSEF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68346682|gb|AAY94288.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 484

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 142/434 (32%), Gaps = 61/434 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAN--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +          +
Sbjct: 119 --VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  +             F
Sbjct: 170 AEADESDASFL---------------HLQPLVAVVTNIDADHMATYDGDFNKLKKTFVDF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              LP    A++  DD   +E++ +        ++ G+ +   +    V     +   T+
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRP---TVTYGFSEEADVRAINVRQQGMQTFFTV 271

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
               ++  D    +PG   V N+L    +    GI    +++ L     V  RF+    +
Sbjct: 272 LRRDREPLDVSVNMPGNHNVLNSLATICIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K +R      R+++V+                  L 
Sbjct: 332 PVEGGNVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQPHRFSRTRDLYDDFVQVLA 391

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEML------ 456
            A++ ++ +  P  E+  P     ++ H I        R +     I   +++       
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQ------RGQLDPIYIERGVDLAPLVKPL 445

Query: 457 -NKQDVLVVAGKGH 469
               D+L+  G G 
Sbjct: 446 LRAGDILLCQGAGD 459


>gi|78046387|ref|YP_362562.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|109892756|sp|Q3BXF1|MURC_XANC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78034817|emb|CAJ22462.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 477

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/429 (21%), Positives = 147/429 (34%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G     +    R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTSSGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
           P  E P        +   I            +I  +   + ++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI++NG
Sbjct: 463 VAQHIISNG 471


>gi|209545290|ref|YP_002277519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532967|gb|ACI52904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 149/448 (33%), Gaps = 37/448 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  VS D+R +  G +F+A+ G   DGH  +  A+ QGA A ++     L     T  
Sbjct: 24  VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAALDQGAAAAMIHDPTVL----GTDS 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  +L V +T   L+        +    ++AVTG+ GK++    ++      G +    
Sbjct: 80  DDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKTTTKEMLRLALGAIGPT---- 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIA 206
                          +  +   +   L+ L       V     +H G        ++ + 
Sbjct: 136 ----------HCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAVMVRPLV 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +   H+ +  + +A    K  L   L P    AI+  D        ++A  A   
Sbjct: 186 ALVTTIAGAHLGHMGSLEAIAREKSDLIATL-PPAGIAIVPDDATGQPIFAEQAARARAT 244

Query: 267 VLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +   G +      +  V         T++++G+        PG   V NA  A     A+
Sbjct: 245 LWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATALAAVAAL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
           G D A     L       GR            +  + Y  +  S+   L  +  + + R 
Sbjct: 305 GADIATAATALADFRPGAGRGALKPILGGRAALLDESYNASVLSVRSSLAVLGLLPATRR 364

Query: 385 IVVFGCGGDRDQGKRPIMG---KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           + V G   +     R          L  AD+   +  +       K   +++        
Sbjct: 365 MAVLGDIRELGAFARAEHESLLSAVLAHADLVFCSGPD------MKYLFDLLPPSRRGAW 418

Query: 442 KGNRIE-A--IRTAIEMLNKQDVLVVAG 466
             +    A  +R A+      DV++V G
Sbjct: 419 APDAASLAPLVRDAVAQ---DDVILVKG 443


>gi|58583448|ref|YP_202464.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428042|gb|AAW77079.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 500

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 139/429 (32%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 97  GTDCVVVSSAIRDDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 149

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 150 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 191

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    +++
Sbjct: 192 AEADESDGSFLRL---NPLMAVITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLSLL 248

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 249 CIDDP---EVAALAGRTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 305

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G          R+  
Sbjct: 306 ALPGRHNVLNALAAAAIGWQLGVAPGTIARALENFAGIGRRFNDLGEVTTSTGARVRVVD 365

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 366 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 425

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVAGKGHETV 472
           P  E P                  +    +     +           D+L++ G G    
Sbjct: 426 PAGEAPIPGADSRALARAIRARGRSEPVVVGQIASLAEVLPDVLQDGDLLLMMGAGDIGY 485

Query: 473 ---HIVTNG 478
              HI+ NG
Sbjct: 486 VAQHIINNG 494


>gi|323142002|ref|ZP_08076853.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413534|gb|EFY04402.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
          Length = 464

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 156/439 (35%), Gaps = 62/439 (14%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AEA+V+S+A   +  +     +   P+L   +    +          +  + +AV G  G
Sbjct: 69  AEAVVISTAIHPNNPELMEARKRGIPVLHRSDVLAAVM---------NAADGVAVAGAHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ ++ +  I   SG+    I  G  S++   A++                     G  
Sbjct: 120 KTTTSAMISCIAAESGIDPTVIIGGEVSSLGGNARNG-------------------AGRF 160

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V+    S G        +       TN+  DH+D++ T++  + A  + F   + +   
Sbjct: 161 VVAEADESDGSFLK----LYPYLAVVTNIEDDHLDHYGTEENIYQA-FKQFVGNIKEGGK 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           A++  D+A  + +     +       V  +G     + +    +     +  +G+   + 
Sbjct: 216 AVLCFDNAKVRRLAAE-TDKEVITYGVEGEGADYIARDISYGVDGTSYKLYYKGEFVTEV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V N++ A      +GI +  +L  L+K      RFE  G    G  +  DY
Sbjct: 275 HLIVPGRHNVLNSMGAFAAAHEMGIATDKILASLKKFGGAKRRFETKG-KVNGVWVVDDY 333

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    + + LK  R     R++ VF                      D  I+TD    S
Sbjct: 334 AHHPTEIGVTLKAARQTKPERLLCVFQPHRYTRTKLLFSEFCECFKDCDELILTDIYAAS 393

Query: 423 EDPEKIRA----EIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           E  E I       +  GI        +  G   +A      ++   D+++  G G     
Sbjct: 394 E--EAITGVSSMHLAEGIKAATGQEVLYIGKLTKAEEYLERVVRPGDLVMTIGAGD---- 447

Query: 474 IVTNGEKKMSVDCDIIREI 492
           +   GE       +++RE+
Sbjct: 448 VFKIGE-------ELVREL 459


>gi|255320030|ref|ZP_05361226.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
 gi|255302898|gb|EET82119.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
          Length = 482

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 145/429 (33%), Gaps = 51/429 (11%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI  A    + A  +VVS+A   ++          I VV    + L       +G     
Sbjct: 71  FIGHAADNIKNASVLVVSTAIDPENPEVKAAIEQRIPVVRRA-EMLGELMRYRHG----- 124

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  +    G+      PT  I                +  AL  
Sbjct: 125 -IAVAGTHGKTTTTSLLTCMLAEEGMD-----PTYVIGGLLNRT--------GVNAALGA 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                      +AS   L+         +A   TN+  DH+D +             F  
Sbjct: 171 SRYIVAEADESDASFLHLE--------PMAAIVTNIDADHMDTYGGSFDVLKDTFIQFLH 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
            LP    A++  DDA  +E+M R       +L+ G+     I    V     +   T+  
Sbjct: 223 KLPFYGLAVVCGDDANIREIMPRIARP---LLTYGFNPDNDIRAVDVEQDGMRSHFTVLR 279

Query: 296 EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
           + ++        PG   V NAL A G+    G+  A +   LE    V  RF+  G    
Sbjct: 280 KDREPLRLTINQPGLHNVLNALAAIGVATDEGVSDAAIGRALEGFSGVGRRFQVQGEFGL 339

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                ++  DY H    +E  +K  R +    R++++F                  L   
Sbjct: 340 EQGTVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMMFQPHRFSRTRDCFDDFVDVLSQV 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAI-EMLNKQD 460
           D  ++ +  P  E P  I       +   I     +E I         +  I ++L   D
Sbjct: 400 DQLLLLEVYPAGEKP--IVGADSRSLARSIRLRGEVEPILIDPVQGNLQNVIQKVLQPND 457

Query: 461 VLVVAGKGH 469
           +L+  G G+
Sbjct: 458 LLLTQGAGN 466


>gi|113971897|ref|YP_735690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
 gi|122943467|sp|Q0HE84|MURC_SHESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113886581|gb|ABI40633.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
          Length = 488

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 150/428 (35%), Gaps = 49/428 (11%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            G   + Q     A+ +VVS+A + ++          I +V    + L+      +G   
Sbjct: 72  HGADNVQQ-----ADVVVVSTAINPENPEIIAAKELRIPIVRRA-EMLAELMRYRHG--- 122

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S +  +  ++G       PT  I                    +
Sbjct: 123 ---VAIAGTHGKTTTTSLIASLYGQAGRD-----PTFVIGGLLNSAGTNARLGTSRY-LI 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D +        +    F
Sbjct: 174 AEADESDASFL---------------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
              LP    A++  DDA  +E+M R        ++ G+     +         ++ + T+
Sbjct: 219 LHNLPFYGVAVVCIDDAVVREIMPRIGRHM---ITYGFSDDADVQALNFQQQGHQCRFTV 275

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF+ +G  
Sbjct: 276 RRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKF 335

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T      +  DY H  + +   +K  R      R+++ +                  L 
Sbjct: 336 ATPKGEVMLVDDYGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFIEVLS 395

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D  ++ +     E P        +   I + G    I   +  +      ++L + D+
Sbjct: 396 QVDCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDL 455

Query: 462 LVVAGKGH 469
           L+  G G+
Sbjct: 456 LLTQGAGN 463


>gi|90424796|ref|YP_533166.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
 gi|109892731|sp|Q211T9|MURC_RHOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|90106810|gb|ABD88847.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
          Length = 467

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 144/421 (34%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVS+A    +          I VV        L   +         +A+ GT G
Sbjct: 65  AGADVVVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLKSC-------VAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +G     +     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSMVAALLD-AGEFDPTVINGGIINAYGTNARLGAGEWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T  A   A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQEA-FRDFVENVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF---- 300
           +  D    + ++ +  +   R+++ G      + L  +          ++   +      
Sbjct: 216 MCIDHPVVQALVGKIEDR--RIITYGENPQADVRLLDLTPNGGSSAFRVAFRDRKAGTAH 273

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D + P+PG     NA  A  +   +G+    + + L     V  RF   G    G  
Sbjct: 274 EIADLVLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAGFGGVRRRFTKTGEW-NGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I  DY H    +  +LK  R  T G++I V                    + AD+ +V +
Sbjct: 333 IIDDYGHHPVEIAAVLKAARESTKGKVIAVVQPHRFTRLQSLFEEFCTCFNDADVVVVAE 392

Query: 418 DNPRSEDP-EKIRAEIIHGIPGFIEKGNRI-------EAIRTAI-EMLNKQDVLVVAGKG 468
             P  E P E +  +  H + G    G+R         A+ + +    +  D +V  G G
Sbjct: 393 VYPAGEAPIEGVDRD--HFVLGLRAHGHREVIPLQESAALASVVYGAAHSGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|21241550|ref|NP_641132.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|23821877|sp|Q8PPA7|MURC_XANAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21106901|gb|AAM35668.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 477

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 91/429 (21%), Positives = 144/429 (33%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V       + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPCMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G          R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTSTGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
           P  E P        +   I            +I  +   + ++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI+ NG
Sbjct: 463 VAQHIINNG 471


>gi|227494649|ref|ZP_03924965.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
 gi|226831831|gb|EEH64214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
          Length = 455

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 85/419 (20%), Positives = 154/419 (36%), Gaps = 41/419 (9%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             +VVS+A    +          + V+  + + L++ A  L      + +AV G  GK++
Sbjct: 63  ATVVVSTAVRETNPELAFAREHNLPVIHRS-QALAIAAQGL------DFVAVAGAHGKTT 115

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +  +      +G+          ++ F     L                 QG   V+  
Sbjct: 116 TSGMLAAALSAAGMDPSFA-VGGVVAGFGTGAHLG----------------QGRFFVAEA 158

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S G   +            TN+  DH+D++ +++A F A    F   +  +   ++ A
Sbjct: 159 DESDGSFLNYT----PRVALVTNVEPDHLDHYGSREA-FEAVFDEFVTRITADGALVVCA 213

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           DD  +  + +R    G RV S G        + + + +V    +     +S   +     
Sbjct: 214 DDPGASALGQRVLATGRRVWSYGLDSSVEGAQHLQISEVELHASGSSFLVSYGDETVAVH 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V NA  A  + + +GI  +++ E L+       RFEF G  + G R++ DYA
Sbjct: 274 LNVSGLHNVLNATGALAVALDLGISLSVMAEALKAFTGTGRRFEFKGEVA-GKRLFDDYA 332

Query: 364 HTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  + +   LK     +  G+++V+F                 +L LAD  ++ D     
Sbjct: 333 HHPSEVAAALKQARVVVGEGKVVVLFQPHLYSRTRNFAAEFAASLALADQVVLADIYGAR 392

Query: 423 EDPEKIR--AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV---HIVT 476
           EDP      A I   +      G    A   A E+    D+ +  G G+ T     I+ 
Sbjct: 393 EDPMPGITSALIGDKLVEVAFVGPLETAAEVAAELTEAGDICITMGAGNVTSVGNQIIN 451


>gi|294787902|ref|ZP_06753146.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
 gi|294484195|gb|EFG31878.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
          Length = 470

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 134/424 (31%), Gaps = 53/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 63  QGAQVVVTSTAIRADNPEVLAALEQHIPVIPRA-MMLAELMRFKNG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +   +G   +F IG   T +                   ++       + 
Sbjct: 116 KTTTTSLTASVLGAAGLDPTFVIGGKLTAAGTNAKLGSGNY-------IVAEADESDASF 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +                +  +    TN+  DH+D +  +          F   +P    A
Sbjct: 169 LY---------------LSPVFTVVTNIDEDHMDTYDHKIDKLYQAFTDFIHRMPFYGKA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----- 299
            +  D A+ + ++       C   S+  +   I+   + AI ++ + T  +  +      
Sbjct: 214 FLCVDSAHVRNILPEIKRPYC-TYSISDETADIYATNILAIGSQMKFTAHIRQQKNNEPL 272

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSR 354
            FD +  +PG   V NAL + G+ +   +    +   L     V  RF+  G        
Sbjct: 273 VFDVVLNIPGVHNVCNALASIGVALECKVPVDAIQAGLAGFSGVGRRFQSYGEMNLPQGG 332

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L  AD  
Sbjct: 333 KALVIDDYGHHPVEMAATLAAARGAYPDNRLVLAFQPHRYTRTRDLIDDFSAILSTADFL 392

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E P  I       +   +    ++E I          T +  L   DV++ 
Sbjct: 393 MLTEVYAAGEQP--IPHADGRSLARIVRARGKVEPIFCEDVNLIPETLLPFLQDGDVILT 450

Query: 465 AGKG 468
            G G
Sbjct: 451 MGAG 454


>gi|228970145|ref|NP_273471.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           MC58]
 gi|325199611|gb|ADY95066.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 468

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 63  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 116 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 157

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 158 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 214 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 271 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 330

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 331 TALLVDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 390

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 391 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 448

Query: 465 AGKG 468
            G G
Sbjct: 449 MGAG 452


>gi|307265454|ref|ZP_07547010.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919568|gb|EFN49786.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 819

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 142/388 (36%), Gaps = 27/388 (6%)

Query: 65  AQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   I  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 ENGAIIEINASPGIRMHHYPSKGKPR-------NVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G   + +G T T   +  D  +          A + L+ + + 
Sbjct: 487 NGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADKNID 543

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241
              +E +  G+ +  L       G  TN+  DH+  D  +T +     K  L  E + ++
Sbjct: 544 AAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA-LVVEAVKED 602

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQV 291
             +++ ADD  +  + +RA                       G  +++K    +    Q+
Sbjct: 603 GYSVLNADDPMTTYLAQRAKGKIIYFSRYDNNLTVKKHIEKGGIAVYVKDGVIVIANGQI 662

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRFEFV 349
              V+ ++          + V NAL A      + +   ++ + ++  +         F 
Sbjct: 663 IPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFYCDTTHNPGRFN 722

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I    
Sbjct: 723 LFNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGQG 782

Query: 410 ADIAIVTDD-NPRSEDPEKIRAEIIHGI 436
            D   V +D + R   P ++   +  G 
Sbjct: 783 FDFIYVKEDLDLRGRKPGEVAKLLEQGA 810


>gi|312196218|ref|YP_004016279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
 gi|311227554|gb|ADP80409.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
          Length = 493

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 120/384 (31%), Gaps = 35/384 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +     DSR ++ G +FVA+ G + DGH F              + A   +   A    +
Sbjct: 27  VTAAVVDSRLVEPGALFVALPGARVDGHDFAA-----------GAVAAGARAVLAARPVS 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V +    L   A+ +       +LA+TG+SGK++    +  +    G +    G 
Sbjct: 76  VPAVLVADPAGALMALAAHVRTLTKATVLAITGSSGKTTTKDLLADLLGSLGPTLAPPGS 135

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +             P   Y+              + + A   G         +   G  
Sbjct: 136 FNNEIGLPLTLLRLEPDTEYV-------------ALEMGARGIGHIAALCQVARPQVGVV 182

Query: 210 TNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            N+G  H+  +   +     AK  L E         ++ ADD     +  RA        
Sbjct: 183 INVGSAHVGEYADGRAGIAQAKGELAEA---ATDVVVLNADDPLVAAMRPRAAGRRVVTF 239

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            V         +       +    +  + +       L GE QV NAL AA   +A+G+ 
Sbjct: 240 GVAADADVRAERIALDAAGRASFDLVTDAERHRVALALVGEHQVGNALAAAAAALAVGMT 299

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS------ 381
                  L            V T   G  +  D Y     S+   L+ +  + +      
Sbjct: 300 PTAAAAALAAARPRSRWRMEVTTAPSGLVVVNDAYNANPESMRAALRALVGLGADGGPDR 359

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI 405
            R   V G  G+          ++
Sbjct: 360 RRTWAVLGPMGELGTAAEAEHAEL 383


>gi|330981215|gb|EGH79318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 460

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 139/434 (32%), Gaps = 62/434 (14%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI        GA+ +VVSSA +  +          I VV    + L+      +G     
Sbjct: 39  FIGHRAENTIGADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG----- 92

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +AV GT GK++  S +  +    G   +F IG     +        +          ++
Sbjct: 93  -IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIA 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+  ++            F 
Sbjct: 145 EADESDASFL---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFL 189

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++          L+ G+ +   I    V         T+ 
Sbjct: 190 HNLPFYGLAVMCIDDPVVREILPLVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVL 246

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
              ++  D    +PG   V N+L    +    G+    +++ L     V  RF+    + 
Sbjct: 247 RRDREPLDVSVNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELP 306

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     +  DY H    +  ++  +R      R+++V+                  L  
Sbjct: 307 VDGGNVMLVDDYGHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD 366

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEML------ 456
           A++ ++ +  P  E+P        +   I   G    I        I   +E+       
Sbjct: 367 ANVLLLMEVYPAGEEPVPGADSRNLCHSIRQRGQLDPIY-------IERGVELAPLVKPL 419

Query: 457 -NKQDVLVVAGKGH 469
               D+L+  G G 
Sbjct: 420 LRAGDILLCQGAGD 433


>gi|25008816|sp|Q9K0Y1|MURC_NEIMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|7225646|gb|AAF40861.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis MC58]
 gi|325140938|gb|EGC63445.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           CU385]
 gi|325205492|gb|ADZ00945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M04-240196]
          Length = 469

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A   ++          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E  
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQG 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   L   R      R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  I A     +   I    ++E I            + +L   D+++ 
Sbjct: 392 VLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|307244053|ref|ZP_07526172.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492577|gb|EFM64611.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
          Length = 453

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 150/448 (33%), Gaps = 54/448 (12%)

Query: 47  VAI-VGNKEDGHL----FIPQAIAQ-GAEAIV------VSSAYSLQDFSATIRSNTPILV 94
           + +  G +  G      ++   +   GA   V      +S+  ++  ++A I  +   LV
Sbjct: 19  ICLNKGYRVSGSDAQDSYLLDHLRSLGATIYVGQKKENISNDINMVVYTAAISDDNEELV 78

Query: 95  VDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GP 149
               +  L +  +   G+      N +AV GT GK+S  S +  I   +      +  G 
Sbjct: 79  EAKNKNILLINRAAFLGQIMREYRNSIAVAGTHGKTSTTSILSTIFDYAQTDPTVLVGGN 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            STI      N     S  ++ +A  Y+ S                         + G  
Sbjct: 139 LSTIGG----NVRIGNSKHFITEACEYVDSF-------------------LSFNPLIGIV 175

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+  DH+DY         A    F +LLP+    II  D+  +K+++   ++    ++ 
Sbjct: 176 LNIEEDHLDYFSGLDEI-KASFNKFGKLLPQSGYFIINGDNENTKDIV---YDVRANIIR 231

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGLCIAIG 326
            G       +              +++ K  +   F   + G   +YNA  A    I   
Sbjct: 232 FGQNPDNDAIISDIRYDENGYAIFNLKYKGVNLGGFHLSVYGLHNIYNATAAILAAIVSD 291

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ID   + + + + H V  RFE  G       +  DYAH    ++  L   + +   ++ V
Sbjct: 292 IDVDTIRKSVLEYHGVGRRFEKKG-YYNDALVIDDYAHHPTEIKATLAAAKNLRDKKLWV 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI-----RAEIIHGIPGFI 440
            F                 A   AD  IVTD     E DP  I        +       I
Sbjct: 351 AFQPHTYSRTKSLFKEFSEAFYSADKVIVTDIYAAREKDPGDISSKDLVQSLYQNNVDAI 410

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E +    + L   DV +  G G
Sbjct: 411 YLPTFDEIVDYIKDKLGPNDVFMTCGAG 438


>gi|256751471|ref|ZP_05492349.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749690|gb|EEU62716.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 819

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 142/388 (36%), Gaps = 27/388 (6%)

Query: 65  AQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   I  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 ENGAIIEINASPGIRMHHYPSKGKPR-------NVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G   + +G T T   +  D  +          A + L+ + + 
Sbjct: 487 NGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTCLADKNID 543

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241
              +E +  G+ +  L       G  TN+  DH+  D  +T +     K  L  E + ++
Sbjct: 544 AAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA-LVVEAVKED 602

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQV 291
             +++ ADD  +  + +RA                       G  +++K    +    Q+
Sbjct: 603 GYSVLNADDPMTPYLAQRAKGKIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIVIANGQI 662

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRFEFV 349
              V+ ++          + V NAL A      + +   ++ + ++  +         F 
Sbjct: 663 IPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHNPGRFN 722

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I    
Sbjct: 723 LFNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGQG 782

Query: 410 ADIAIVTDD-NPRSEDPEKIRAEIIHGI 436
            D   V +D + R   P ++   +  G 
Sbjct: 783 FDFIYVKEDLDLRGRKPGEVAKLLEQGA 810


>gi|115372803|ref|ZP_01460109.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823487|ref|YP_003955845.1| UDP-n-acetylmuramate--l-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370284|gb|EAU69213.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396559|gb|ADO74018.1| UDP-N-acetylmuramate--L-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 475

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 131/414 (31%), Gaps = 48/414 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA    +          I V+        L   +         +AV G+ GK+
Sbjct: 77  ADVVVISSAVKKDNPEVVAARQRKIPVIPRAEMLAELMRLKYA-------VAVAGSHGKT 129

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +GL      PT+ +                L        S+ +   + 
Sbjct: 130 TTTSMVATVLSAAGLD-----PTAVVGGKV----------NVLDSNAKLGKSELMVVEAD 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E+    L  H            TN+  +H+D++ T      A +  F   +P     ++ 
Sbjct: 175 ESDGSFLKLH------PSIAVVTNIDPEHMDHYGTLDVLQTAFVE-FCNRVPFYGLNVLC 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFP 305
            D    + ++ R      R ++ G        L+ V       +      +    +F   
Sbjct: 228 LDHPNVQALLPRLEK---RAVTYGSSHMADYRLEGVTLEGFTTRFQAFRRDEPLGEFRVR 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G     NAL    +   + I   +V   L +   V  RF   G    G  +  DY H 
Sbjct: 285 MVGAHNALNALAVIAVAEEMEIPLDMVRGALAEFGGVQRRFTVRGEVG-GVTVVDDYGHH 343

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +   L   R     R++V F                 + + +D+  VT      E+P
Sbjct: 344 PTEVMATLAGARKAFGRRLVVAFQPHRYTRTHDLLKEFATSFNDSDVLFVTSVYGAGEEP 403

Query: 426 ----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                     E IR      +    ++ +   A+   +    + D+++  G G 
Sbjct: 404 IPGATGDVLAEAIRDHGHRDVTFVEKRMDLPAALAQRVM---EGDLVLTLGAGD 454


>gi|317484864|ref|ZP_07943756.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
 gi|316923910|gb|EFV45104.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
          Length = 455

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 149/414 (35%), Gaps = 43/414 (10%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++V S+   +D    + +    + V    + L+       G      +A+ GT GK+S
Sbjct: 66  VNVLVKSSAVAEDNPEVVAARQKGIPVIPRAEMLAELMRLRTG------IAIAGTHGKTS 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S    I   + L    I     I+++  + RL           ++       + +   
Sbjct: 120 TTSLTAAIFDAASLDPTVI-IGGRINAYGANARLGQGE-----YLIAEADESDGSFLC-- 171

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        +  I    TN+ RDH+D++  Q+A   A +  F   +P     ++  
Sbjct: 172 -------------LLPIINVVTNVDRDHLDHYGNQEAIDEAFVS-FMNQIPFYGLNVVCG 217

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
           DD   + ++ R       V++ G+        +V       +  + ++G++  +     P
Sbjct: 218 DDPGVERLLPRVKRP---VVTYGFGSGNHIRAEVLECGVINRFKVFIKGEELGEVTLRQP 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A G+ +  GI+    +E L +   V  RFE  G       +  DY H   
Sbjct: 275 GRHNILNALAAIGVALDAGIEPHFCIEGLARFGGVGRRFEHKGEK-NDILVVDDYGHHPV 333

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSED- 424
            +   L   RT    R +VV      R    + + G+    L   D  ++T+  P SE  
Sbjct: 334 EIAATLATARTAYPDRRVVV-AFQPHRFSRTQALFGEFCHVLGTVDKLLLTEIYPASEKP 392

Query: 425 -PEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            P      +  GI    +       N  E +    ++L   D+ +  G G+ T 
Sbjct: 393 IPGVNGQNLAQGIRQVSDADVSYFQNFDEMVAALPDILKPGDLFLTIGAGNVTT 446


>gi|167838002|ref|ZP_02464861.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           MSMB43]
          Length = 465

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 141/428 (32%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +    G   +F IG   T +                 ++ 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGTGDFIVAEADESD 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   +                      +  +    TN+  DH+D +    A        F
Sbjct: 166 ASFLN----------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI 293
            + LP    A++  DDA  ++++         V+  G+        + V A   +   T+
Sbjct: 204 TQRLPFYGSAVVCIDDANVRQIVPLISKP---VVRYGFSADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351
             +G++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G  
Sbjct: 261 LRDGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-AL 407
              +     +  DY H    +   +   R    GR +V+        + +      +  L
Sbjct: 321 PVADGGAYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 408 DLADIAIVTDDNPRSEDPEKI-------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  ++T+     E P          RA    G    +      E      ++    D
Sbjct: 381 STVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPMFVAAVDEVPDALAKLARAGD 440

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 441 VVITMGAG 448


>gi|160894558|ref|ZP_02075334.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
 gi|156863869|gb|EDO57300.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
          Length = 460

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 77/426 (18%), Positives = 141/426 (33%), Gaps = 55/426 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGT 123
           G  A  ++    L  ++A I  +         +    L  ++L G+   N    +AV+GT
Sbjct: 60  GQTASNITDQIDLVVYTAAIHPDNEEFQAAKAKNIPMLTRAQLLGQIMTNYKYSVAVSGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT---PSPIYLAKALSYLSSQ 180
            GK++  + +  I   +      + PT ++     D         S  ++ +A  Y +S 
Sbjct: 120 HGKTTTTAMLSYIMLEA-----DVDPTISVGGIIDDIGGNIRVGSSDYFVTEACEYTNSF 174

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                                         N+  DH+D+    +    +    F    P+
Sbjct: 175 HAF-------------------SPYISIILNVDADHLDFFSGIEEIAES-FHTFATKTPE 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGK 298
               I+  D  Y   V +      C+V++ G   K  +           +   T+ ++G+
Sbjct: 215 NGKVIVNGDMKYFDTVTRDLK---CQVITFGEDPKNHYSAANIRFDEFGRPTYTLVIDGE 271

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D    + G+  VYN+L A      +GID   +   L        RFE+ GT     +
Sbjct: 272 NITDITLHVFGKHNVYNSLSAIAAATELGIDIDAIKAGLLHCKGAERRFEYKGTILDNVK 331

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +  DYAH    +   L   +      +  VF                  L + D  IV D
Sbjct: 332 VMDDYAHHPTEIAATLAAAKNTDYHELWCVFQPHTYSRTYALFDDFAKVLSVCDHVIVAD 391

Query: 418 DNPRSEDP------EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                E        +++  +I         +P F +  N        ++   K D+L+  
Sbjct: 392 IYAAREKDTGLVSSKQLAEKIASYGTDAFYLPSFTDIEN------YLLKNCKKNDLLITM 445

Query: 466 GKGHET 471
           G G+  
Sbjct: 446 GAGNVD 451


>gi|6523805|gb|AAF14862.1|AF110740_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
 gi|12060818|gb|AAG48251.1|AF306766_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
          Length = 487

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 143/439 (32%), Gaps = 52/439 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 73  GHQ-AENA--DGADVLVVSSAINRANPEVASALERRIPVVPRA-EMLAELMRYRHG---- 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +        ++ 
Sbjct: 125 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGASRYLVAEADESD 182

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +                          ++ +    TN+  DH+  +             F
Sbjct: 183 ASFLH----------------------LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G  +   +    +     +   T 
Sbjct: 221 LHNLPFYGLAVMCVDDPVVREILPQIARP---TVTYGLSEDADVRAINIRQEGMRTWFTV 277

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +  E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G  
Sbjct: 278 LRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 337

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K IR      R+++V+                  L 
Sbjct: 338 QVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDLYEDFVQVLG 397

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDV 461
            A++ ++ +  P  E+P       ++   I            R   +   ++ +L   D+
Sbjct: 398 EANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAGDI 457

Query: 462 LVVAGKGHETV---HIVTN 477
           L+  G G        ++ N
Sbjct: 458 LLCQGAGDVGGLAPQLIKN 476


>gi|319791816|ref|YP_004153456.1| cyanophycin synthetase [Variovorax paradoxus EPS]
 gi|315594279|gb|ADU35345.1| cyanophycin synthetase [Variovorax paradoxus EPS]
          Length = 855

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 143/389 (36%), Gaps = 38/389 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA    G+ P  ++AVTGT+GK++ A  +  +   SGL +   G T+T   +    +  
Sbjct: 460 MFAHGDDGRIP--VVAVTGTNGKTTTARLINHLLASSGLRT---GMTNTDGVYVDGRQTD 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           +        A + L    V     E +  G+ +  L   +      TN+G  DH+   Y 
Sbjct: 515 SGDCSGPKSARNVLMHPDVDAAVFEVARGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYI 574

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GK 275
            T +     K R+    +  +  A++ A D     V   A      V+            
Sbjct: 575 TTVEDLAVLK-RVIVRNVAADGYAVLNAADVN---VAAMAAGCPGHVIFFTADRMHPVMA 630

Query: 276 FIHLKKVCAIHNKQQVTISVEG--------KDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +    ++  Q   ++ EG        +D          FQV N + +     A+G+
Sbjct: 631 THRAQGKRTVYVDQDTLVAAEGSWRERIPLRDVPITRNGTIGFQVDNVMASVAAAWAVGL 690

Query: 328 DSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           D   +   L         VPGRF     + RG  +  DY H ++++  ++  + T+ + +
Sbjct: 691 DWDTIRSGLASFMNDAAGVPGRFN--VMDYRGATVIADYGHNTDAMRALVSAVDTMPANK 748

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG---- 438
             VV    GDR          I  +  D  I+  D   R     ++ A +  G+ G    
Sbjct: 749 RSVVISGAGDRRDSDIRDQTAILGEAFDDVILYQDAAQRGRADGEVMALLRQGLQGAGRT 808

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
               E      AI TA+  L   D+ ++ 
Sbjct: 809 RQIDEIRGEFVAIDTALARLQPGDLSLIL 837


>gi|218671407|ref|ZP_03521077.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium etli GR56]
          Length = 247

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 18/226 (7%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G  F AI G++ DGH +   A+A GA  +VVS A       A  R   P++VV++    L
Sbjct: 39  GEAFFAIKGDRVDGHDYASMAMANGASLLVVSEAR----LPAMGRLTVPMIVVEDVLAAL 94

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                    +    I+AVTG+ GK++    ++Q+   SG     +   +           
Sbjct: 95  GKLGLASRERSKARIIAVTGSVGKTTTKEMLRQVLSPSGKVHASVASFNNHWGVPLTLAR 154

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 Y                 V  +  G  +  +  I+      T +   H+   ++
Sbjct: 155 MPGDTDY-------------GVFEVGMNHPGEIRPLVAMIRPDVAVITTIAPAHLGNFKS 201

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            +    AK  +FE L P     ++  D+     + + A + G   +
Sbjct: 202 IKEIAAAKAEIFEGLEP-GGHVVLNRDNDQFNFLDRTAQSLGIEHI 246


>gi|309379069|emb|CBX22371.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 480

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 75  NGADVVVTSTAVKKDNPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 127

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 128 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 169

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 170 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E +
Sbjct: 226 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQE 282

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 283 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 342

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 343 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  + A     +   I    ++E I            + +L   D+++ 
Sbjct: 403 VLTEVYAAGEEP--VAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 460

Query: 465 AGKG 468
            G G
Sbjct: 461 MGAG 464


>gi|218512669|ref|ZP_03509509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           8C-3]
          Length = 216

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 21/233 (9%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           F AI G++ DGH +   A+A GA  +VVS A       A  R   P++VVD+    L   
Sbjct: 3   FFAIKGDRVDGHDYASMAMANGASLLVVSEAR----LPAMGRLTVPMIVVDDVLAALGRL 58

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                 +    I+AVTG+ GK++    ++ +   SG     +               +  
Sbjct: 59  GQASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASV--------------ASFN 104

Query: 166 SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           +   +   L+ +          V  +  G  +  +  I+      T +   H+   ++ +
Sbjct: 105 NHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVTMIRPDVAVITTIAPAHLGNFKSIK 164

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKF 276
               AK  +FE L P     ++  D+     + + A + G   + S G   K 
Sbjct: 165 EIAAAKAEIFEGLEP-GGHVVLNRDNDQFNFLDRTAQSLGVEHIHSFGQHAKA 216


>gi|332527086|ref|ZP_08403166.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111517|gb|EGJ11499.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
          Length = 473

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 83/436 (19%), Positives = 144/436 (33%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA+A+V+S+A    +          I VV      L+       G    
Sbjct: 56  GHD--AANIE-GADAVVISTAVKGDNPEVITARARRIPVVPRAVM-LAELMRLRRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   +G     +     +S+ A     +            
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEAGRDPTFVIGGKLLSAGANSRLGSG----------- 154

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA     D   L+ +  I    TN+  DH++ +    +   +    F 
Sbjct: 155 -------EYIVVEADES--DASFLNLM-PIMAVVTNIDADHMETYGHDLSRLRSAFVDFI 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AI+  DD   + +M         V+S G                  ++  + 
Sbjct: 205 HRMPFYGAAIVCGDDPGVRAIMPMLSRP---VVSYGLGEDVQVRAVDVEALPGGRMRFTA 261

Query: 296 EGK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + +      D      LPG   V NAL A  + + + +     +  L     V  RF+  
Sbjct: 262 QRRNGVALPDLSITLNLPGVHNVCNALAAIAVAMELELPDEPTVRALAGFTGVGRRFQRW 321

Query: 350 GT----NSRGG---RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           G      +RGG    +  DY H    +  ++   R      R+++ F             
Sbjct: 322 GELPVSAARGGGSFTLIDDYGHHPAEMAAVVAAARGAFPGRRLVLAFQPHRYTRTRDCFE 381

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIR---TAI 453
                +  AD  ++T+     E P  I A     +   +    +     ++AI     AI
Sbjct: 382 DFVKVMGSADAVLLTEVYAAGEAP--IVAADGRALARALRVAGKVDPVFVDAIAELPQAI 439

Query: 454 -EMLNKQDVLVVAGKG 468
            E     DV++  G G
Sbjct: 440 AEFAQDGDVVIAMGAG 455


>gi|313886033|ref|ZP_07819771.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924563|gb|EFR35334.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 461

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 136/365 (37%), Gaps = 41/365 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R  G     ++A+TG++GK++  +++      +GL     G   T           
Sbjct: 96  EFAYRYAGD--SVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGT----------- 142

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 143 --------SLARQVALAPHAYYVIELSSFQLDH--MYQFRAHIAILLNITPDHLDRYDHQ 192

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AKMR+ +   P +       DD   + + +    AG R+    +  K      V
Sbjct: 193 MELYARAKMRITQNQEPTDYFISWIEDDWTQRLLKEPGMGAGRRIF---FSTKASSDDAV 249

Query: 283 CAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A  +  Q+  +++   F+ L     L G+  V NAL       A+G+   ++   LE  
Sbjct: 250 VASSHNGQLCFALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETF 309

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VP R E++ +      I    A   NS    L+++R  T     ++   G D+     
Sbjct: 310 TNVPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPT-----ILILGGTDKGNDYN 364

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +M  +   +  +  +T D+       K+       IP   E  +  +AI  A +M    
Sbjct: 365 DLMDLVKEKVVGLIYLTTDS------AKLHRSFDSVIPRHEEVTSMRDAIAAARQMATAG 418

Query: 460 DVLVV 464
           D +++
Sbjct: 419 DTVLL 423


>gi|119511605|ref|ZP_01630712.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
 gi|119463766|gb|EAW44696.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
          Length = 495

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 140/414 (33%), Gaps = 50/414 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +  +    A +    PIL   +    L      +   H    +AV GT GK++
Sbjct: 97  VVCSTAINANNLEYKAALELGCPILHRSDVLAAL------ISDYHS---IAVAGTHGKTT 147

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    I                    +   +  + L          +
Sbjct: 148 TSSMIGYMLLEAGLDPTII----------------VGGEVDAWEGNARLGQSQYLVAEAD 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D+++T +   N    +F++        I   
Sbjct: 192 ESDGSLVKH-----APEIGIITNIELDHPDHYETLEEVVN----IFQKFADSCKTLISCI 242

Query: 249 DDAYSKEVMKRAHNAGCR-VLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
           D    +++++ +     +  ++               +    +     +  +GK    L 
Sbjct: 243 DCYQVRDLLRNSGGDRFKPTITYSLNPETDADYTATNIDYRADGTTALVWEKGKALGVLK 302

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L     + NAL A  +  A+G++   + + +        RFEF G    G     DYA
Sbjct: 303 LRLLSRHNLSNALSAVAVGRALGLEFGTIAKGIATFEGARRRFEFRGEVG-GITFIDDYA 361

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPR 421
           H  + + + L   R        VV      R       + + A     AD+ ++TD    
Sbjct: 362 HHPSEIRVTLAAARLQARPEQRVVAIFQPHRYSRTFTFLAEFAESFTHADLVVLTDIYSA 421

Query: 422 SEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E        E++ AEI    P  + + N        ++ L   D+ +  G G+
Sbjct: 422 GEPNLGQISGEQLAAEIAKLHPQVLYQPNLPLMSEFLLQTLRPGDLALFLGAGN 475


>gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 823

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 137/403 (33%), Gaps = 28/403 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   L        +  I+ + +DSR +   A  +F A+     DGH +I +    G 
Sbjct: 5   IHKIAKILDAIVSDLNDADISILLTDSRQVFYPAETLFFALSTKNNDGHKYINELYELGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS             ++   LVV NT   L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSQILP----DWENYNDANFLVVTNTLAALQRIAAYHRNQFDIPVIGITGSNGKTV 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ QI  +            T S  + ++++  P  ++     + L          E
Sbjct: 121 VKEWLYQILHQ--------DFNITHSPRSYNSQIGVPLSVWQMNDHTQLGIFEAGISQPE 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S          I+   G  TN+G+ H +  ++ +     K+ LF          I   
Sbjct: 173 EMS-----KLEAIIRPTIGILTNIGQAHQEGFKSMKQKCLEKLELFINC----DVIICEE 223

Query: 249 DDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           ++    E M+ A  +  R+     G     +++ K+        +  SV G     + P 
Sbjct: 224 ENELIDECMEIACLSHKRLTWSRRGSSKSPLYIMKIEKQEKSTTIHYSVLGMASKLVIPF 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             +  + +A+        + +    + E +  L  V  R +     +    I   Y    
Sbjct: 284 SDDASIEDAIHVLATAFYLHMSLPDINERMSTLEPVAMRLDVRQGKNNSTLINDSYNSDI 343

Query: 367 NSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           NSL + L  +         + +++           R +    A
Sbjct: 344 NSLNIALDFLAQRATTSEQKKVLIISDIPQSGLIPRELYYLAA 386


>gi|167580474|ref|ZP_02373348.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           TXDOH]
          Length = 465

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 139/428 (32%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +    G   +F IG   T +                 ++ 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGTGDFIVAEADESD 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   +                      +  +    TN+  DH+D +    A        F
Sbjct: 166 ASFLN----------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI 293
            + LP    A++  DDA  ++++         V+  G+        + V A   +   T+
Sbjct: 204 TQRLPFYGSAVVCIDDANVRQIVPLISKP---VVRYGFAADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351
             EG++    +  LPG   V NAL A  +   + +    + + L + + V  RF+  G  
Sbjct: 261 LREGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEI 320

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-AL 407
                    +  DY H    +   +   R    GR +V+        + +      +  L
Sbjct: 321 PAAGGGAYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 408 DLADIAIVTDDNPRSEDPEKI-------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  ++T+     E P          RA    G    +      E      ++    D
Sbjct: 381 STVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGD 440

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 441 VVITMGAG 448


>gi|254462013|ref|ZP_05075429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206678602|gb|EDZ43089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 485

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 127/397 (31%), Gaps = 39/397 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ +S D+R I+ G +FVA+   + DGH F+ Q           + A  +      +
Sbjct: 20  DWSVSGISIDTRSIEVGDLFVALKAAR-DGHEFVAQ------ALAKGAGAALVTHVPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+LVV++    L         +    ++A+TG+ GK+S    ++ +    G +   
Sbjct: 73  AKDAPLLVVEDVLSALEDLGRAGRARTEARVVAITGSVGKTSTKEMLRDVLSAQGRTHAS 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLI 205
           +               +  +   +   L+ +       V     +H G         +  
Sbjct: 133 V--------------ASYNNHWGVPLTLARMPQDTEFAVIEIGMNHPGEIAPLAKMARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++           K  +   L P +  AI+ AD   +  +  +A     
Sbjct: 179 VSLITTVAAAHLEAFDNIDGIAAEKAAIMNGLEP-DGVAILNADIETAHVLKSKAEAMHI 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +  G       L+      N   V  ++ G    F     G+    N L A     A+
Sbjct: 238 NAVWFGASADEYCLETCVLRGNTTVVEANILGTPLLFKIQSAGQHFAMNGLGALASAEAL 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-------RIYVDYAHTSNSLEMILKNIRT 378
           G D AL  + + K     GR                   I   Y     SL   L  +  
Sbjct: 298 GADLALAAQSIAKWVPFTGRGAREVIALDPADSRMTLELIDDAYNANPTSLSAALDVLAA 357

Query: 379 ---------ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                    ++ GR I   G   +    +  +   +A
Sbjct: 358 AEVTHDIGRVSKGRRIAYLGDMKELGDDENAMHEAVA 394


>gi|269838015|ref|YP_003320243.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
 gi|269787278|gb|ACZ39421.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
          Length = 473

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 143/439 (32%), Gaps = 40/439 (9%)

Query: 48  AIVGNKEDGHLFIP----QAIAQ-GAEAIVVSSAYSLQDF-----SATIRSNTPILVVDN 97
           A  G +  G   +     QA+   G    V     +L D      +A    + P +    
Sbjct: 36  AARGYRVSGSDAVDSPVVQALRAEGFPVTVGHDPANLDDPDLVVVTAAAPESNPEVAAAR 95

Query: 98  TRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            R    +  + L G+  +    LAV GT GKS+ +  +      +G             S
Sbjct: 96  ARGIPIIKRAALLGRLCDERVCLAVAGTHGKSTTSGMLALALVHAGEDP----------S 145

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           FA    +          A  +  ++   +       H                 TN+  D
Sbjct: 146 FAVGAVVKELGTNARPGAGPFFVAEADEYDYSFLWLH-----------PDVAVVTNIEHD 194

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H D   ++++   A  R    + P +   ++ ADD   ++++ R  +   RV++ G    
Sbjct: 195 HPDLFPSRESVLEAFTRFVSGMRP-DGTLVVSADDPGCRDLLARLGDRRPRVVTFGSDPN 253

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                          +  +  G+       +PG     NAL A     A G+    +L  
Sbjct: 254 ADWSIVRDEETGSGDLVRAPGGRTLRLRLAVPGWHNRLNALAALAAGEAAGVAPERLLPG 313

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDR 394
           L     V  RFE  G  +RG  +  DYAH    +   ++  R    + R+  VF      
Sbjct: 314 LAAFGGVGRRFEVRG-QARGVTVVDDYAHHPTEIRATIEAARERYPAARLWAVFQPHTYS 372

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIPG--FIEKGNRIEAIR 450
              +       AL LAD  ++       E  D     A+I   + G   +   +   A  
Sbjct: 373 RTREMLDDFAAALSLADYVVLAPIYAARETNDLGVSSADIAGRMAGRPVVVVESPAAAGE 432

Query: 451 TAIEMLNKQDVLVVAGKGH 469
                    DV+++ G G 
Sbjct: 433 VVAADAEAGDVVLILGAGD 451


>gi|226311413|ref|YP_002771307.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
 gi|254765985|sp|C0ZAJ4|MURC_BREBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226094361|dbj|BAH42803.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
          Length = 460

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 153/423 (36%), Gaps = 41/423 (9%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117
           A+GA   +  +A  ++      +S +I  + P ++         +  S++  +  +    
Sbjct: 47  ARGAVIHIGHNAAHVEGADSIVYSTSISKDNPEVIAGQALGIPVMHRSQMLARILNERTG 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G  GK++  S +  + +  G     + PT  I                     +  
Sbjct: 107 VAVAGAHGKTTTTSMISHVLEECG-----VDPTFIIGGELMS---------------AGT 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +++  T   V A +   D   L+  + +    T++  DH+++              F   
Sbjct: 147 NAKAGTSDYVIAEADESDGSFLEY-RPMYEIVTSIEPDHLEHFDGDFNNLKQAYVQFLSH 205

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTIS 294
           L  +  AI+  DD++ +EVM              +   Q +F      C           
Sbjct: 206 LKPDGKAILCIDDSHVREVMPSVEKTVVTYAVDPNFVAQAQFSATSIECGDRCSTCQVYH 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + +  +    +PG+  + NAL A  +C+ IG+    + + L        RF+ +G ++R
Sbjct: 266 KDERLGELCLVVPGKHNIANALAAIVVCLDIGLSFDKIAQALSTFSGAKRRFQIIG-DAR 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +  DYAH    +   L   R  +  R+I VF                 A   AD  I
Sbjct: 325 GVLVVDDYAHHPTEIIATLSGARA-SGRRVIAVFQPQRYTRTYFLMDEFSRAFAEADEVI 383

Query: 415 VTDDN-PRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +TD   P  E+  E + +E++      +  P       + +      + L + D+++  G
Sbjct: 384 ITDIYSPAGEEKIEGVTSEVLVQKIRTNSHPRAQYIPTKEQMQEHVFKELQEGDLVLTMG 443

Query: 467 KGH 469
            G 
Sbjct: 444 AGD 446


>gi|289663636|ref|ZP_06485217.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289671017|ref|ZP_06492092.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 477

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 146/429 (34%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIRDDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDSDHLENYGNDFARIQAAFAEFLQRLPFYGLALL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+ S  +   LE    +  RF  +G          R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVASETIARALENFAGIGRRFNDLGEVTTSTGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
           P  E P        +   I            +I  +   + ++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI+ NG
Sbjct: 463 VAQHIINNG 471


>gi|23014460|ref|ZP_00054275.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 470

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/451 (15%), Positives = 150/451 (33%), Gaps = 44/451 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR +Q   +F+A+ G   DGH  +             ++   +      ++ + 
Sbjct: 27  RGVSIDSRTVQPSDLFIALEGPNHDGHDHVAS------ALAGGAAGALVHKLPKGVQDDA 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+++V +T   L         +   +I+AVTG+ GK+     +       G++ + +G  
Sbjct: 81  PLILVRDTMTALQDLGVASRARSSAHIVAVTGSVGKTGSKEMLALALSDQGVTHYSLG-- 138

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +  +L+ + +     +     +H G     +  ++      
Sbjct: 139 ------------SFNNHWGVPLSLARMPAGSRYAIFEIGMNHPGEITPLVRMVRPHVAVI 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+++  +      AK  +F+ + P     +   +  ++      A      + S
Sbjct: 187 TTVEMVHMEFFASTAEIAAAKAEIFDGIEPGGMAVLPRDNAHFAFLAEAAAKAGITHIRS 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   +       CA+  +     + +  +   +   + G     N+L       A+G D
Sbjct: 247 FGNHIESTARLLDCAVDPQSTAVFALLTDQPLSYRIGVAGRQWATNSLAVLLAVEALGAD 306

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITS---G 382
             L    L  +    GR +       GG    I   Y  +  S++  +  + ++     G
Sbjct: 307 VNLAAMALAAMSAPKGRGQRRRVEMDGGSFDLIDESYNASPVSMKAAIAALASVKPAKGG 366

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIA---LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           R I V G   +       +   +A          + T           I    +H     
Sbjct: 367 RRIAVLGDMLELGPQGPMLHASMAETVERWNIDLVFT---------AGILTAHLHDALAE 417

Query: 440 IEKGNRI---EAIRTAIEML-NKQDVLVVAG 466
             +G      +A+   ++      DV++V G
Sbjct: 418 QRRGGHAADSDAVSALVKAAVRPGDVVMVKG 448


>gi|254475825|ref|ZP_05089211.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
 gi|214030068|gb|EEB70903.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
          Length = 465

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 136/411 (33%), Gaps = 41/411 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V+SSA    +       N  + VV        L          ++ +A+ GT GK+
Sbjct: 71  AAVVVISSAIKPGNPELDEARNRGLPVVRRAEMLAELMRL-------KSNIAIAGTHGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + + +    +G     I     I ++  + R+     +                  V
Sbjct: 124 TTTTMMAE-LMVAGHFDPTIVNGGIIHAYGSNARMGQGEWM-----------------VV 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA       +RL          TN+  +H+++        N     F   +P    A+  
Sbjct: 166 EADESDGTFNRLPAT---IAVVTNIDPEHMEHWGDFDTLRNGFYE-FVSNIPFYGIAVCC 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LF 304
            D    + ++ R  +          Q   +    +          I ++ +D        
Sbjct: 222 TDHPEVQALVGRITDRRVVTYGFNTQAD-VRAVNLTYKAGVAHFDIQLQAEDRVIEGCTL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG+  V NAL A  +   +G++S+ +   L     V  RF  VG    G  I  DY H
Sbjct: 281 PMPGDHNVSNALSAVAVARHLGMNSSEIRAALAAFGGVNRRFTKVG-EVDGVTIIDDYGH 339

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               +  +LK  R    GR+I V                    + AD+  + +     ED
Sbjct: 340 HPVEIAAVLKAARQACDGRVIAVHQPHRYSRLSSLFDDFCGCFNEADVVAIAEVFAAGED 399

Query: 425 P--EKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468
           P     R +++ G+     +  R      +  R   E     D++V  G G
Sbjct: 400 PIEGAGRDDLVAGLIRHGHRHARALLDEPDLERLVREQARPGDMVVCLGAG 450


>gi|221202510|ref|ZP_03575540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
 gi|221208168|ref|ZP_03581173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221172071|gb|EEE04513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221177605|gb|EEE10022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
          Length = 468

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 154/447 (34%), Gaps = 36/447 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR + AG +FVA+ G + D H F+          +    A +     A   
Sbjct: 24  VTFERVSTDSRTVGAGDLFVALKGERFDAHDFL--------ADVAARGAAAALVAQAPAG 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++V   TR  L   A     +    ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  VALPMIVGGETRASLGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +++                  L   ++  +  + +  +  G  +           
Sbjct: 136 ATAGNLNN----------DVGLPLTLLRLTAAHRLAVIELGMNHPGETEILARLTAPTVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A       +    LP +  A+  ADDAY+     R    G R+
Sbjct: 186 LVNNAQREHQEFMATVEAVALEHAAVI-HALPPDGVAVFPADDAYASIW--RVAATGNRI 242

Query: 268 LSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L             +V    +  ++ I              GE    NAL A    +A G
Sbjct: 243 LDFALHDDERQTAAQVAGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAATAAALAAG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILKNIRTITSG 382
           +  + + + LE    V GR +    ++    G  +  D Y    +S+   +  +    + 
Sbjct: 303 VALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP 362

Query: 383 RIIVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           R++V+   G   D+G    R +         D      D  R        A        F
Sbjct: 363 RVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDA-----CAAYGEAARHF 417

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + G  ++A+  A         ++V G
Sbjct: 418 DDVGTLVDALLAAGYGAEAS--VLVKG 442


>gi|269215182|ref|ZP_05987878.2| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
 gi|269208127|gb|EEZ74582.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
          Length = 469

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E +
Sbjct: 215 FLCVDSEHVRAILPKVSKPYA---TYGLDDAADIYATDIENVGAQMKFTVHVQMKGHEQE 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  + A     +   I    ++E I            + +L   D+++ 
Sbjct: 392 VLTEVYAAGEEP--VAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|262195225|ref|YP_003266434.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
 gi|262078572|gb|ACY14541.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
          Length = 472

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 75/401 (18%), Positives = 137/401 (34%), Gaps = 41/401 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
           S+ IR   P +     R    +  + + G+       LAV G+ GK++  + +  +   +
Sbjct: 72  SSAIRGYNPEVEAARARMIPVIPRAEMLGELMRMKTGLAVAGSHGKTTTTTMIASVLMAA 131

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G+      PT+ I              + LA A    S   V        S         
Sbjct: 132 GMD-----PTAVIGGRVN--------ALGLANARWGKSEYLVAEADESDGSF-------L 171

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       TNL  +H+D++ +      A    F   LP    A +  D+A  + ++ + 
Sbjct: 172 TLAPTFAVVTNLDPEHLDHYGSVDNLHRA-FINFLNRLPFYGLAAVCLDNAGVQAILPQI 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNAL 316
                R ++ G   +  +  +   I  +  VT  V  +      +   P+PG+  V N+L
Sbjct: 231 QK---RFVTYGMASQATY--RARNIRPEGLVTRYVAWRRAEELGEIHLPMPGQHNVLNSL 285

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-N 375
               +C A+ +   +  + L+    +  RF   G  + G  +  D+ H    +   L   
Sbjct: 286 AVLAICDALDVPFEVTAKALQSFEGIQRRFTVRGEVA-GITVVDDFGHHPAEVRSTLAGA 344

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIR 429
                S RII  F          +      +   AD  I+TD     E P      E + 
Sbjct: 345 RSAFPSRRIIAAFQPHRYTRTRDQFQEFARSFYDADKVIITDVFSAGEAPIEGATAEALA 404

Query: 430 AEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             +   G         R +      E++ + D+++  G G 
Sbjct: 405 KAVSTSGHGDVTHIARRADVAEHLSEIVREGDLVITLGAGD 445


>gi|163782320|ref|ZP_02177318.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882353|gb|EDP75859.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 467

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 160/457 (35%), Gaps = 55/457 (12%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G +   GH    + +++  + +V SSA    +          I V+    + L+     
Sbjct: 50  KGARIHIGHR--AENVSEDTQVVVYSSAVREDNPELRRAKELGIPVIPRG-EMLAELFKL 106

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
             G      +AV+G+ GK++  S V  I + +G     I                  S  
Sbjct: 107 KEG------IAVSGSHGKTTTTSMVAHILEEAGFDPTVI---------IGGILQRLGSNA 151

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L +    +S    +  S               +       TN+  +H+DY++  +    
Sbjct: 152 KLGRGDLLVSEADESDGSFL------------KLSPAVNVITNIDLEHMDYYRDLEDIVA 199

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A  + F   +P     +  ADD     V     +   ++++ G + +   +    +I   
Sbjct: 200 AFAK-FAGSVPFYGFCVANADDPN---VRNATSSVTKKLITFGIEKEADVVGTELSIEGG 255

Query: 289 Q-QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +    +  +G+        + G   VYNAL A  + + +G+   +V   LE  H    R 
Sbjct: 256 RYAFGVVFKGERLGKIRLSIGGRHNVYNALAATAVSLELGVPFEVVRSALEGFHNAERRM 315

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
           E  G    G  IY DY H    +  ++  +R +  G R+++VF                 
Sbjct: 316 ELKGFFG-GVPIYDDYGHHPTEIRAVVSALREMYPGRRLVMVFQPHRYSRTHFLFDSFVE 374

Query: 406 ALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            L L D+ ++ D  P SE      D  ++   +  G     EK N +  +    E L + 
Sbjct: 375 VLKLPDLLLMLDIYPASEKNIYGVDARELA--LRSGATFVEEKENVLSLLE---ENLREG 429

Query: 460 DVLVVAGKGH-----ETVHIVTNGEKKMSVDCDIIRE 491
           DVL+  G G      E      +G     ++    +E
Sbjct: 430 DVLLFMGAGDITRLCEDFVKAHSGALPEDLEHQSAKE 466


>gi|114797447|ref|YP_761699.1| UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas neptunium ATCC
           15444]
 gi|123027693|sp|Q0BXU4|MURC_HYPNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114737621|gb|ABI75746.1| UDP-N-acetylmuramate--alanine ligase [Hyphomonas neptunium ATCC
           15444]
          Length = 474

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 123/423 (29%), Gaps = 50/423 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +++S+A    +          I VV        + A     K+    + V GT GK
Sbjct: 68  GAGTVIISTAIRRDNPEVQAARAAGIPVVRRAN----MLAEITRLKY---TVCVAGTHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +   +G+    I     I ++  + +      + +    S           
Sbjct: 121 TTTTSLVACLLDGAGIDPTVING-GIIHAYGSNYKAGESDWMVVESDESD---------- 169

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+  +H+D++ T      A    F E LP    A++
Sbjct: 170 ----------GTFAKLHPTCAIVTNIDPEHMDHYGTMDKLREA-FDTFVENLPFYGFAVL 218

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
             D    + +  R  +          Q   +    +          + +     +     
Sbjct: 219 CTDHPEVQALAARVTDRRRITYGFNLQAD-VRAVNLSTDLKGAHFDVEIRRGAGEAPRRI 277

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-----SR 354
                P+ GE  V NAL A  + + +G     +   L     V  RF  VG         
Sbjct: 278 EGLTLPMAGEHNVQNALAAITVALELGASDEQISASLASFGGVKRRFTPVGEWLPAAGGE 337

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             +I  DY H    +  +LK  R +     +I V                    D AD  
Sbjct: 338 PVKIIDDYGHHPVEIAAVLKAARAMQADRTVIAVCQPHRYSRLKDLFEDFSRCFDQADHV 397

Query: 414 IVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +V       E P      E +   I  +G        +  E       +     ++V  G
Sbjct: 398 LVAPVYEAGETPIPGITHETLVRSIQRNGHRSARALPSLAELPEVVKTLAGPGAMVVCLG 457

Query: 467 KGH 469
            G 
Sbjct: 458 AGD 460


>gi|21230200|ref|NP_636117.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769810|ref|YP_244572.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993025|ref|YP_001905035.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|23821875|sp|Q8PCJ9|MURC_XANCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81304236|sp|Q4UQX1|MURC_XANC8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082517|sp|B0RVA4|MURC_XANCB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21111738|gb|AAM40041.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575142|gb|AAY50552.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734785|emb|CAP52995.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris]
          Length = 477

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 142/429 (33%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G     +    R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTASGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-------EMLNKQDVLVVAGKGHETV 472
           P  E P                  +    +           ++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQVAGLSEVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
               IVT+G
Sbjct: 463 VAQQIVTDG 471


>gi|152981679|ref|YP_001355246.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
 gi|151281756|gb|ABR90166.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
          Length = 853

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 140/374 (37%), Gaps = 30/374 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AV GT+GK++    +  I Q    + +++G TST   + ++ R+ T        A +
Sbjct: 469 PVVAVAGTNGKTTTVRLIAHILQ---GNKYRVGMTSTDGVYIENKRIDTGDCSGPRSARN 525

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID--YHQTQQAYFNAKMR 232
            L    V    +E +  G+ +  L   +      TN+G  DH+   +  T +     K  
Sbjct: 526 VLMHPDVDAAVLETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKRV 585

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQ 290
           + + + P    A++ A D     +      +                  +    +     
Sbjct: 586 IVQNVAP-NGTAVLNAADPMVANMAGSCPGSVTFFAQDSNHAVLATHRAQGHRVLFQDGN 644

Query: 291 VTISVEGK--------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341
           V +  EGK        D          FQV NA+ A G    +G+D  +VLE L      
Sbjct: 645 VIVLSEGKFEHRIQLSDIPITHNGTVGFQVENAMAAIGAAWGLGLDWNVVLEGLRTFENS 704

Query: 342 ---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGRF     + +G  +  DY H  +++E + + +  + + R +VV    GDR    
Sbjct: 705 ASSTPGRFNIF--SHKGATVIADYGHNPDAIEALTRAVEGMPAKRRMVVISGAGDRRDED 762

Query: 399 RPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRT 451
                +I  D  D  I+ +D   R     ++ A +  G+          E      AI T
Sbjct: 763 LRRQTQILGDAFDDVILYEDQCQRGRADGEVLALLRDGLSNAKRTRFTQEIQGEFIAIDT 822

Query: 452 AIEMLNKQDVLVVA 465
           A+  L   D+ ++ 
Sbjct: 823 ALAKLEAGDLCLIL 836


>gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei DM98]
          Length = 303

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 108/302 (35%), Gaps = 23/302 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EF 310
           E 
Sbjct: 285 EH 286


>gi|254520318|ref|ZP_05132374.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
 gi|226914067|gb|EEH99268.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
          Length = 874

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 129/353 (36%), Gaps = 25/353 (7%)

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +     + G   + +G TST   +  D  + +        A + L +  V    +E +  
Sbjct: 495 ISHTLSKMG---YCVGMTSTSGIYINDECIDSGDDTGFDSAKAVLLNHDVDVAVLETARG 551

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYADD 250
           G+ +  L          TN+  DH+      + +     K  L  E + ++   ++ ADD
Sbjct: 552 GMIKKGLAYDLADVAVITNIREDHLGIDGVDSMEELCYVKS-LVGEAVKEDGYVVLNADD 610

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDF-------- 300
            +SK ++ R                 K   +  +        + +S +GK++        
Sbjct: 611 YWSKSILNRIKANIIFFSKDSNNPLLKQSKISNISVYLENDDIVVSNKGKEYVICGIKEV 670

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRI 358
                    F + N L   G  + +GID  ++   +    +   +    F   +  G  +
Sbjct: 671 PITLDGKLTFNIENILAICGALVGMGIDYCMIKNGITTYLLNSHKNSGRFNCYDINGINV 730

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DY H  +    +L  ++ I SG +  V G  GDR  G    +GKI+    D  IV +D
Sbjct: 731 ILDYGHNIDGYNSVLSAVKEINSGMLYGVIGIPGDRTNGTAKEIGKISSKYLDYIIVKED 790

Query: 419 -NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + R     ++   I+ GI        +    +  +A   A+ M  + D ++V
Sbjct: 791 KDLRGRKQGEVAELIVDGITEDSDGKKYEVILSEEDAFEKALNMAKRGDTVIV 843


>gi|126735382|ref|ZP_01751128.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. CCS2]
 gi|126715937|gb|EBA12802.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. CCS2]
          Length = 465

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 148/417 (35%), Gaps = 51/417 (12%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE IV+SSA      +  A      P++        L            ++ +AV GT 
Sbjct: 70  GAEVIVISSAIKPGNPELDAARAKGMPVVRRAEMLAELMRL---------KSNVAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +    G+    I     I ++  + R+     +                
Sbjct: 121 GKTTTTTMVAALLDEGGIDPTVING-GIIHAYGSNARMGQGEWM---------------- 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VEA       +RL          TN+  +H+++  T++A        F   +P    A
Sbjct: 164 -VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGTEEALHQG-FYDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   DD   + ++ +  +   RV++ G+     I    +          I+++ +D    
Sbjct: 219 VCCTDDPDVQSLVGKITDR--RVVTYGFNAQADIRAVNLHYKAGVAHFDIALQAEDAVIE 276

Query: 304 ---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I  
Sbjct: 277 GCALPMPGDHNVSNALSAVAVARHLGMKKDEIRAALAGFKGVNRRFTKVG-EIDGVAIID 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +  +LK  R  T GR+I V                    + AD+  +++   
Sbjct: 336 DYGHHPVEIAAVLKAARQSTEGRVIAVHQPHRFSRLSHHFDEFCACFNDADVVGISEVFS 395

Query: 421 RSEDP--EKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E+P       +++ G+          +E  + +E  R   E     D++V  G G
Sbjct: 396 AGEEPIDGASHRDLVAGLIRHGHRHARTVESEDDLE--RLVREQAKSGDMVVCLGAG 450


>gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 185

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 7/186 (3%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHR 198
           GLDQ R
Sbjct: 180 GLDQGR 185


>gi|110640090|ref|YP_680300.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406]
          Length = 842

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 89/497 (17%), Positives = 172/497 (34%), Gaps = 37/497 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHL 58
           MK  D+   + P ++    I         I ++  DSR +   AG +F AI G   DGH 
Sbjct: 21  MKSIDISVNELPGIVQGECIQQSTEPNTFIKQLVIDSRKLMAPAGAVFFAIDGKHHDGHA 80

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            I +   +G    +V  + SL +           + V ++   L   A+    +    I+
Sbjct: 81  HITEMYKKGVRIFIVEKSISLNEIPQAA-----CIRVKSSVSALQACAAYRRKQLDIPIV 135

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++ K+ V  ++ Q              +   S  + ++++  P  ++   AL+   
Sbjct: 136 AITGSNAKTIVKEWLSQTVAA--------DYSVVKSPRSYNSQIGVPLSVW---ALNERH 184

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+    +  S+    Q     I+   G FTN+G  H    + ++     K++LF +  
Sbjct: 185 TIGIFEAGI--STTKEMQALQKVIEPTIGIFTNIGSAHDKGFKNREEKIQEKLKLFADC- 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEG 297
                 +IY  D   +E+            +   Q        + A    + Q+ +  + 
Sbjct: 242 ----KVVIYCSD--HEEIHAEITAQHLPTFNWSLQSSATIEYSIAAKDSFQTQIEVKTKE 295

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F  P   +  + NAL  A     +G     V   +  L  V  R E    N+    
Sbjct: 296 HQGFFYLPFVDDASIENALHVATTLFYLGYSIQEVSRKISGLQAVGMRLELKEANNDCYL 355

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           I   Y +    L + L  +  +       V+     +       +  ++A       + T
Sbjct: 356 IDDSYNNDLAGLSIALDFLEHVKQSEVKTVILSDVLESGLDSAVLYKEVASY-----LTT 410

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKGHETVHIV 475
               R         E+     G  E     EA I+   + + ++++++V  KG       
Sbjct: 411 AQVQRVIAIGSQITELKKWYNGRAEYYPTTEAFIKDLTKTVFEKEIVLV--KGARIFQFE 468

Query: 476 TNGEKKMSVDCDIIREI 492
               +      + + EI
Sbjct: 469 KIVSRLQHKVHETVLEI 485


>gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei BCC215]
          Length = 300

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 108/302 (35%), Gaps = 23/302 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSASPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDAY+  + + A      V    +         V    +   + I   G   D      G
Sbjct: 226 DDAYAG-IWRVAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALG 284

Query: 309 EF 310
           E 
Sbjct: 285 EH 286


>gi|84625260|ref|YP_452632.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188575298|ref|YP_001912227.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|109892757|sp|Q2NZB9|MURC_XANOM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892758|sp|Q5GW42|MURC_XANOR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620442|sp|B2SNZ4|MURC_XANOP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84369200|dbj|BAE70358.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188519750|gb|ACD57695.1| UDP-N-acetylmuramate--alanine ligase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 477

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 139/429 (32%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIRDDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    +++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLSLL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGRTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G          R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVAPGTIARALENFAGIGRRFNDLGEVTTSTGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVAGKGHETV 472
           P  E P                  +    +     +           D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQIASLAEVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI+ NG
Sbjct: 463 VAQHIINNG 471


>gi|294142803|ref|YP_003558781.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella violacea DSS12]
 gi|11761336|dbj|BAB19203.1| MurC [Shewanella violacea]
 gi|293329272|dbj|BAJ04003.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella violacea DSS12]
          Length = 494

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 144/427 (33%), Gaps = 47/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q    G + +VVS+A   ++          I VV    + L+      +G    
Sbjct: 83  GH-HADQV--HGTDVVVVSTAIDAENPELVAAKELRIPVVQRA-EMLAELMRYRHG---- 134

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  I  ++        PT  I                    ++
Sbjct: 135 --VAVAGTHGKTTTTSLIASIYAQADRD-----PTFVIGGLLNSAGTNARLGNSRY-LIA 186

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D +        +    F 
Sbjct: 187 EADESDASFL---------------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFIDFL 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++      G ++++ G+ +   I              T+ 
Sbjct: 232 HNLPFYGVAVMCIDDPVVRELL---PKVGRKIVTYGFSEDADIQALNFVQQGYSSHFTLR 288

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G +D   +  LPGE  V NAL +  +     I+   ++  L +   +  RF+ +G   
Sbjct: 289 RDGVEDIAVMVNLPGEHNVLNALASIAVATEDEIEDEAIVLALAQFEGIGRRFQQLGTFA 348

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T+     +  DY H  + +   +K  R      R+++++                  L  
Sbjct: 349 TSKGEVMLVDDYGHHPSEVAATIKAARLGWPDKRLVMIYQPHRYSRTRDLYDDFVEVLSQ 408

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D     E P        +   I   G    I      + +    ++L   D+L
Sbjct: 409 VDCLILLDVYSAGEAPVPGADSRALCRSIRQRGQLDPIFVAGTEQLLSLLPDVLQDGDLL 468

Query: 463 VVAGKGH 469
           +  G G+
Sbjct: 469 LTQGAGN 475


>gi|114045897|ref|YP_736447.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
 gi|123326953|sp|Q0HZR5|MURC_SHESR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113887339|gb|ABI41390.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
          Length = 488

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 150/428 (35%), Gaps = 49/428 (11%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            G   + Q     A+ +VVS+A + ++          I +V    + L+      +G   
Sbjct: 72  HGADNVQQ-----ADVVVVSTAINPENPEIIAAKELRIPIVRRA-EMLAELMRYRHG--- 122

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S +  +  ++G       PT  I                    +
Sbjct: 123 ---VAIAGTHGKTTTTSLIASLYGQAGRD-----PTFVIGGLLNSAGTNARLGTSRY-LI 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D +        +    F
Sbjct: 174 AEADESDASFL---------------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
              LP    A++  DDA  +E+M R        ++ G+     +         ++ + T+
Sbjct: 219 LHNLPFYGVAVVCIDDAVVREIMPRIGRHM---ITYGFSDDADVQALNFHQQGHQCRFTV 275

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF+ +G  
Sbjct: 276 RRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKF 335

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T      +  DY H  + +   +K  R      R+++ +                  L 
Sbjct: 336 ATPKGEVMLVDDYGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFIEVLS 395

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D  ++ +     E P        +   I + G    I   +  +      ++L + D+
Sbjct: 396 QVDCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDL 455

Query: 462 LVVAGKGH 469
           L+  G G+
Sbjct: 456 LLTQGAGN 463


>gi|225181552|ref|ZP_03734994.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167800|gb|EEG76609.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 898

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 141/377 (37%), Gaps = 37/377 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            + +VTGT+GK++ A  ++ + +R GL     G   T   +    ++          A +
Sbjct: 481 PVFSVTGTNGKTTTARMLEFVMRRHGL---YTGICCTDGIYFNGQQVKKGDLTGPLSART 537

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L+   +    +E +  GL +  L   +      TN+  DH+  D  +T     + K  L
Sbjct: 538 VLAHPDIEVAVLETARGGLIRRGLGYDRADVAVITNIRADHLGQDGIETLDDLAHVKS-L 596

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----CAIHNK 288
             E +      ++ AD+ +  E+  R       V+ V  Q   I ++        A+  +
Sbjct: 597 VAEAVYPAGCVVLNADEPHVNELAARV---WAEVIYVSMQSDNIVVRHHLGKGGRAVFVR 653

Query: 289 QQVTISVEG---------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           + + ++  G         + F          QV N L A   C   G+       +L   
Sbjct: 654 RGLVLAAHGSGVVPVGRVRSFVVTHGGRALHQVENLLGALAACWGFGLSPRQAAAYLRTF 713

Query: 340 HV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
                  PGR           R+ VDY H ++ +E      + + + R+I V G  GDR 
Sbjct: 714 AAQPGDNPGRCNLYQVGD--IRVLVDYGHNADGIEKTGLLAKKLGAERLIGVVGVPGDRS 771

Query: 396 QGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGF-------IEKGNRIE 447
                  G+ A    D+ ++ +D + R   P ++   ++ G             + N   
Sbjct: 772 DELVMQAGQAAAGFFDLLVIKEDHDLRGRRPREVAGLLMRGALNAGRDRAALKVEPNERR 831

Query: 448 AIRTAIEMLNKQDVLVV 464
           A++ A+ +    D++V+
Sbjct: 832 AVKKALALSRPGDLVVI 848


>gi|269468108|gb|EEZ79818.1| UDP-N-acetylmuramate-alanine ligase [uncultured SUP05 cluster
           bacterium]
          Length = 471

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 141/415 (33%), Gaps = 47/415 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VVSSA   ++          I +V    + LS      +G      +AV GT GK++ 
Sbjct: 74  AVVVSSAIDEKNPELVKARELNIPIVPRA-EMLSELMRFRFG------IAVAGTHGKTTT 126

Query: 130 ASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            S +  I   +    ++ IG     S        +          ++       + +   
Sbjct: 127 TSLIAHILSEARLDPTYIIGGILNSSGINAKLGESDY-------LIAEADESDASFL--- 176

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        ++ +    TN+ +DH+  +             F   LP     ++  
Sbjct: 177 ------------HLQPMLSVITNIDQDHMSTYGNDYQNLKDAFVSFTSNLPFYGACVLCM 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE--GKDFDFLFP 305
           DD  + ++M   H     +++ G+  K  I  K +     +    +  +   K F     
Sbjct: 225 DDVGATDIMNNIHRP---LITYGFDSKVDIRAKNIKQHGMQMHFDVVCDKYNKPFSVELN 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDY 362
           L G+  + N L A  +   + I  + +   L     V  R E  GT   N++   ++ DY
Sbjct: 282 LIGKHNILNTLAAIAIACELKIKVSAIQSALNNFSGVARRLEHHGTLNINNKQVLLFDDY 341

Query: 363 AHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H  N +  + ++   T  + R++V+F                  L  AD  I+ +  P 
Sbjct: 342 GHHPNEINAVFESLQNTYPNKRLVVIFQPHRYTRTRDLFDDFSRVLSKADALILLEIYPA 401

Query: 422 SE------DPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +E      +   + + I        +   N  E +     ++   DV++  G G 
Sbjct: 402 NELSIARINSSSLASAIRKRSSLDPVVIKNSKEILTVLPNIIKNNDVVLTLGAGD 456


>gi|114704920|ref|ZP_01437828.1| UDP-N-acetylmuramate--L-alanine ligase [Fulvimarina pelagi
           HTCC2506]
 gi|114539705|gb|EAU42825.1| UDP-N-acetylmuramate--L-alanine ligase [Fulvimarina pelagi
           HTCC2506]
          Length = 471

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 143/416 (34%), Gaps = 47/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + +V        L   R         +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKRTNPELAAARERLLPIVRRAEMLAELMRFR-------QAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    GL    +     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVATLLDAGGLDPTVVNG-GIINAYGTNARMGEGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++ T +    A  R F E +P    A++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGTFERVKEA-FRSFVENVPFYGFAVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD------- 299
            D    + V+    +   RV++ G      +  + V     K   +++V  +        
Sbjct: 218 IDHPVVQSVVSEIEDR--RVITYGENPQADVRFENVSFEPGKSHFSVTVRDRVKGTETNL 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P+PG+  V NA  A  +   +G+    + + L     V  RF   G    G  IY
Sbjct: 276 GELTLPMPGKHNVSNATAAIAVADRLGLSPEQIQKGLATFEGVKRRFTLTGV-VDGIAIY 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +L   R   +GR+I V                    + AD  I+    
Sbjct: 335 DDYGHHPVEIRSVLAAARASANGRVIAVVQPHRYTRLQALFPDFASCFNDADTVILAPVY 394

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              E+P      E +   I  G        +  + + T I ++   +D++++ G G
Sbjct: 395 AAGEEPIEFANSEMLVERIKLGGHRDARLIDGPDELPTLINQIAEAEDIVILLGAG 450


>gi|313893638|ref|ZP_07827206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313441782|gb|EFR60206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 460

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 147/436 (33%), Gaps = 61/436 (13%)

Query: 51  GNKED-GH--LFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++      G +A+V S+A    +    A       IL   +  K +   
Sbjct: 50  GATVHIGHNKEYV-----NGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     + +AV G  GK+S  S + QI            PT  I       + ++ 
Sbjct: 105 ---------TDGIAVAGAHGKTSTTSMIGQIL-----VEADADPTVIIGGEVDYLKGSSC 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   +    S G                    ++      TN+  DH+D+++T   
Sbjct: 151 LGKGHFSVVEADESDGSFLK----------------LRPHTIVITNIEDDHMDHYKTMDN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP+   AI+  D+   + VM R        ++ G      ++ K    
Sbjct: 195 LLNAFCE-FVETLPENGKAIVCGDNESIRYVMNRVKRNF---ITYGLDDSNDYVAKNIHY 250

Query: 286 HNKQQV-TISVEGKDFD-FLFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHLEKLHVV 342
            +   V  I  +G + +     +PG+  V N+L A  +     G+++ ++ + L K    
Sbjct: 251 VDSTLVYDIYHKGINIERVRLRVPGDHNVLNSLAAFIVAHDCCGVEARVITKGLGKFIGA 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RFE  G  + G  +  DYAH    ++  LK  + +   R+I VF              
Sbjct: 311 KRRFETKGHVA-GVWVVDDYAHHPTEIKATLKAAKELEKHRVICVFQPHRFTRTSLLKDE 369

Query: 403 GKIALDLADIAIVTDDNPRSED----------PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
              A   AD   +TD     ED          P  I+      +       +  E +   
Sbjct: 370 FATAFTSADEVYMTDIYSSGEDPIPGIDGTTIPNAIKEATGQDVNYVPSVDDLPEVLAKV 429

Query: 453 IEMLNKQDVLVVAGKG 468
           +      D+++  G G
Sbjct: 430 V---RPNDLVITMGAG 442


>gi|28871542|ref|NP_794161.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966566|ref|ZP_03394717.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|302059793|ref|ZP_07251334.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato K40]
 gi|302131740|ref|ZP_07257730.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999568|sp|Q87WY6|MURC_PSESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28854793|gb|AAO57856.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928416|gb|EEB61960.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|331016735|gb|EGH96791.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 486

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 67/424 (15%), Positives = 134/424 (31%), Gaps = 60/424 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG     +        +          ++       + +
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  +             F   LP    A+
Sbjct: 181 ---------------HLQPLVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   ++++          ++ G+     +    V         T+    ++  D  
Sbjct: 226 MCIDDPVVRDILPLVKRP---TMTYGFSEDSDVRAINVRQDGMLTFFTVLRRDREPLDVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             +PG   V N+L    +    G+    +++ L     V  RF+    +        +  
Sbjct: 283 VNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGHVMLVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +  ++  +R      R+++V+                  L  A++ ++ +  
Sbjct: 343 DYGHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAEANVLLLMEVY 402

Query: 420 PRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVA 465
           P  E+P        +   I   G    I        I   +E+           D+L+  
Sbjct: 403 PAGEEPVPGADSRNLCHSIRQRGQLDPIY-------IERGVELAPLVKPLLRAGDILLCQ 455

Query: 466 GKGH 469
           G G 
Sbjct: 456 GAGD 459


>gi|313667818|ref|YP_004048102.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ST-640]
 gi|313005280|emb|CBN86713.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica 020-06]
          Length = 469

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 137/424 (32%), Gaps = 55/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A    +          I V+      L+       G      +A+ GT G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVIPRALM-LAELMRFRDG------IAIAGTHG 116

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    I   +G   +F IG     +                         +G   
Sbjct: 117 KTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLG------------------KGEYI 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V+    S     H    +  I    TN+  DH+D +       +     F   +P    A
Sbjct: 159 VAEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-----EGK 298
            +  D  + + ++ +         + G      I+   +  +  + + T+ V     E +
Sbjct: 215 FLCIDSEHVRAILPKVSKPYA---TYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQE 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
            F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G     N  
Sbjct: 272 SFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGG 331

Query: 355 GGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H    +   +          R+++ F                  L+  D  
Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDAL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVV 464
           ++T+     E+P  + A     +   I    ++E I            + +L   D+++ 
Sbjct: 392 VLTEVYAAGEEP--VAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLN 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|157825459|ref|YP_001493179.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia akari str.
           Hartford]
 gi|166224721|sp|A8GMP6|MURC_RICAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157799417|gb|ABV74671.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia akari str.
           Hartford]
          Length = 478

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 144/436 (33%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA +    +    +    PI+     R+   + A  +  K 
Sbjct: 64  GH--AKQHITN-VSYVVISSAINSNNPEIKEALERKIPII-----RRA-EMLAELMRLKC 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G+ GK++  S +  + + +GL        + I+    +N+ T          
Sbjct: 115 S---VAVSGSHGKTTTTSLMACLFEAAGLC------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY++  +    A  + 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYKDFETLIGA-FKS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHTIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KINIPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V        +  DYAH    ++  L   R I    +G++I +F               
Sbjct: 330 TKV-AEYNNAVVIDDYAHHPEEIKATLATARNIADKQNGKVIAIFQPHRYSRMQHLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTA---------I 453
               + AD+  +TD     E+P E +  + +  +    +  +  +A   A         I
Sbjct: 389 MRCFNDADMIYITDIYAAGEEPIEGVTGQNL--VDKITKNKHHDQANFLAELEDVVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIIMGAGN 462


>gi|15599607|ref|NP_253101.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAO1]
 gi|116052445|ref|YP_792757.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893502|ref|YP_002442371.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|254244778|ref|ZP_04938100.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|313106941|ref|ZP_07793144.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
 gi|23821886|sp|Q9HW02|MURC_PSEAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122257549|sp|Q02H29|MURC_PSEAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711872|sp|B7UZI9|MURC_PSEA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9950643|gb|AAG07799.1|AE004856_10 UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|115587666|gb|ABJ13681.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126198156|gb|EAZ62219.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|218773730|emb|CAW29544.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|310879646|gb|EFQ38240.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
          Length = 480

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 143/439 (32%), Gaps = 52/439 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 66  GHQ-AENA--DGADVLVVSSAINRANPEVASALERRIPVVPRA-EMLAELMRYRHG---- 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +        ++ 
Sbjct: 118 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGASRYLVAEADESD 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +                          ++ +    TN+  DH+  +             F
Sbjct: 176 ASFLH----------------------LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEF 213

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G  +   +    +     +   T 
Sbjct: 214 LHNLPFYGLAVMCVDDPVVREILPQIARP---TVTYGLSEDADVRAINIRQEGMRTWFTV 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +  E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G  
Sbjct: 271 LRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 330

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K IR      R+++V+                  L 
Sbjct: 331 QVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDLYEDFVQVLG 390

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDV 461
            A++ ++ +  P  E+P       ++   I            R   +   ++ +L   D+
Sbjct: 391 EANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAGDI 450

Query: 462 LVVAGKGHETV---HIVTN 477
           L+  G G        ++ N
Sbjct: 451 LLCQGAGDVGGLAPQLIKN 469


>gi|117922174|ref|YP_871366.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
 gi|166224731|sp|A0L1P1|MURC_SHESA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117614506|gb|ABK49960.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
          Length = 488

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 150/428 (35%), Gaps = 49/428 (11%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            G   + Q     A+ +VVS+A + ++          I +V    + L+      +G   
Sbjct: 72  HGADNVQQ-----ADVVVVSTAINPENPEIIAAKELRIPIVRRA-EMLAELMRYRHG--- 122

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S +  +  ++G       PT  I                    +
Sbjct: 123 ---VAIAGTHGKTTTTSLIASLYGQAGRD-----PTFVIGGLLNSAGTNARLGTSRY-LI 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D +        +    F
Sbjct: 174 AEADESDASFL---------------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
              LP    A++  DDA  +E+M R        ++ G+     +         ++ + T+
Sbjct: 219 LHNLPFYGVAVVCIDDAVVREIMPRIGRHM---ITYGFSDDADVQALNFHQQGHQCRFTV 275

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             +GK D D L  LPG+  V NAL A  +     ID + +++ L +   +  RF+ +G  
Sbjct: 276 RRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKF 335

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T      +  DY H  + +   +K  R      R+++ +                  L 
Sbjct: 336 ATPKGEVMLVDDYGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFIEVLS 395

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D  ++ +     E P        +   I + G    I   +  +      ++L + D+
Sbjct: 396 QVDCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDL 455

Query: 462 LVVAGKGH 469
           L+  G G+
Sbjct: 456 LLTQGAGN 463


>gi|329118775|ref|ZP_08247473.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465122|gb|EGF11409.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 484

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 137/420 (32%), Gaps = 49/420 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S+A    +          I V+      L+       G      +A+ GT GK
Sbjct: 79  GADVVVTSTAVKKDNPEVAAALAQQIPVIPRALM-LAELMRFKDG------IAIAGTHGK 131

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S    +   +G   +F IG   T S                         +G   V
Sbjct: 132 TTTTSLTASVLAAAGLDPTFVIGGKLTASGTNARLG------------------KGEYIV 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S     H    +  I    TN+  DH+D +       +     F   +P    A 
Sbjct: 174 AEADESDASFLH----LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAF 229

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DF 300
           + AD  + + ++ +           G +   I  + + +   + +  + V  K     DF
Sbjct: 230 LCADSEHVRAILPKVSKPYT-TYGFG-EDADIRAENIESDGAQMKFAVRVRMKGHEPLDF 287

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGG 356
                LPG   V NAL A G+ +  G D+A + + L+    V  RF+  G          
Sbjct: 288 PVTLNLPGRHNVLNALAAIGVALECGADTAAIQQGLQNFGGVGRRFQSYGEIPLKTGGSA 347

Query: 357 RIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DY H    +   +          R+++ F                  L+  D  ++
Sbjct: 348 LVIDDYGHHPTEMAATLAAARGAYPHRRLVLAFQPHRYTRTRDLFDDFAKVLNTVDTLVL 407

Query: 416 TDDNPRSEDP-----EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           TD     EDP       +   +   G    +   +  E     ++  L+  DVL+  G G
Sbjct: 408 TDVYAAGEDPLPEDSRALARNVRAYGKVEPLYCADVNEMPAMLLDTVLHDGDVLLNMGAG 467


>gi|294793905|ref|ZP_06759042.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
 gi|294455475|gb|EFG23847.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
          Length = 460

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 148/433 (34%), Gaps = 55/433 (12%)

Query: 51  GNKED-GH--LFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++      G +AIV S+A    +    A       IL   +  K +   
Sbjct: 50  GATVHIGHNKEYV-----NGVDAIVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     + +AV G  GK+S  S + QI   +        PT  I       + ++ 
Sbjct: 105 ---------TDGIAVAGAHGKTSTTSMIGQILVEANAD-----PTVIIGGEVDYLKGSSC 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   +    S G                    +       TN+  DH+D+++T   
Sbjct: 151 LGKGHFSVVEADESDGSFLK----------------LHPHTIVITNIEDDHMDHYKTMDN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP+   AI+  D+   + VM R        ++ G +    ++ K    
Sbjct: 195 LLNAFCE-FVETLPEAGKAIVCGDNENIRYVMSRVKRTF---ITYGLEDNNDYVAKNIHY 250

Query: 286 HNKQQV-TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVV 342
            +   V  +  +G +       +PGE  V N+L A  +     G+++  + + L K    
Sbjct: 251 VDSSLVYDVYHKGINIGRISLCVPGEHNVLNSLAAFIVAHECCGVENRFITKALGKFIGA 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RFE  G  + G  +  DYAH    ++  L+  + +   R+I VF              
Sbjct: 311 KRRFETKGHVA-GVWVVDDYAHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKDE 369

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-M 455
              A   AD   +TD     EDP        I   +       +     ++ I   +  +
Sbjct: 370 FATAFTSADEIYMTDIYSSGEDPIAGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKI 429

Query: 456 LNKQDVLVVAGKG 468
           +   D+++  G G
Sbjct: 430 VRPNDLVITMGAG 442


>gi|261401200|ref|ZP_05987325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208881|gb|EEZ75336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
          Length = 452

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 146/421 (34%), Gaps = 40/421 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R           +T  +F           I L   L  
Sbjct: 103 VFGITGSVGKTTVKEMLAAVLRR---RFGNDAVLATAGNFNNH--------IGLPLTLLK 151

Query: 177 LSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234
           L+ +     + +  +  G         K  A    N  R HI            AK  ++
Sbjct: 152 LNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L   +  A+I  +DA     + +         + G     +H + +       +  + 
Sbjct: 212 QGL-CSDGIALIPQEDANLA--VFKTATLNLNTHTFGIDSGDVHAENIVLKPLSCEFDLV 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +    + P+PG   V+NA  AA L +A G+    V E L+    + GR   V +  +
Sbjct: 269 CGDERAAVVLPVPGRHNVHNAAAAAALALAAGLGLNDVAEGLKGFSNIKGRLN-VKSGIK 327

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  D Y    +S++  +  +  + + RI V+   G   +     +  ++     D  
Sbjct: 328 GATLIDDTYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQG 387

Query: 414 I 414
           I
Sbjct: 388 I 388


>gi|258645243|ref|ZP_05732712.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
 gi|260402593|gb|EEW96140.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
          Length = 469

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 140/415 (33%), Gaps = 48/415 (11%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVSSA      +       + PI    +    +  +            +AV G  G
Sbjct: 67  ADVLVVSSAIGMDNPELQEAKSRDLPIFHRSDVLAAIFKWGKG---------IAVAGAHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+ ++ + QI   +     ++ PT  +  F    +  +                G   +
Sbjct: 118 KSTTSAMIGQIFHVA-----KMDPTIVLGGFTDYLKGNSC------------LGHGEHII 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S G        +       TN+  DH+D++ T +    A +     +  K+  AI
Sbjct: 161 AEADESDGSFLKFATFLS----VVTNIEDDHLDHYGTVENIRKAFVEFLNHVTYKDGGAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDF 302
           +  D    + ++ +      +V+S G      + + V   + KQ +       + K    
Sbjct: 217 VCIDSEGVQAILPQIKK---KVISFGINDSAEY-RAVNKRYKKQNMLFDVYHYKEKLGTV 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V +AL A  + +  GI     ++ L     V  RF+       G  I  DY
Sbjct: 273 SLQIPGIHNVRDALGAIVVALYCGISFETSVKALSVFSGVKRRFQ-TKMKEHGVWIVDDY 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    +   LK  + +   R+I  F                 A   AD+   TD     
Sbjct: 332 AHHPTEIAATLKAAKEMGRHRVICAFQPHRYSRTKLLQEEFSEAFIDADVLFFTDIYAAG 391

Query: 423 EDPEK------IRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P +      I   +    P        N  +  +   +++   D+L+  G G+
Sbjct: 392 ESPIQGIDGTLIPNLVKRRFPDKPINYVKNVEDLPKELYKVIKPDDMLITMGAGN 446


>gi|198282524|ref|YP_002218845.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667206|ref|YP_002424714.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|226706334|sp|B5ELC2|MURC_ACIF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711856|sp|B7J3V1|MURC_ACIF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198247045|gb|ACH82638.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519419|gb|ACK80005.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 464

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 137/432 (31%), Gaps = 49/432 (11%)

Query: 51  GNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G +   GH     A  +GA+ +V+SSA    +          I V+    + L+      
Sbjct: 50  GARIFSGH---EAANVRGADVVVISSAIPESNPEVQAARELRIPVIRRA-EMLAELMRFK 105

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G      +A+ GT GK++  S V  I    GL      PT  I    +           
Sbjct: 106 QG------IAIAGTHGKTTTTSLVASILGAGGLD-----PTFVIGGRLKSAGTHAALGSG 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               ++       + +                +  +    TN+  DH++ +         
Sbjct: 155 -EYLVAEADESDASFLY---------------LSPVMAVVTNIDADHMETYGGSLDNLRG 198

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNK 288
               F + LP    A++  D+A    ++         VL  G+     +  + V      
Sbjct: 199 AFLQFLQRLPFYGLAVLCTDEAVVAGLIPELRTP---VLRYGFGADADLQARDVTVQGIG 255

Query: 289 QQVTI-----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +  +     S      D    +PG   V NAL A G+   +GI  + +   L     V 
Sbjct: 256 SRFAVWRRVDSDYVHWLDVELGIPGRHNVLNALAAIGIASKVGIPESTIATALADFRGVG 315

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIM 402
            RFE VGT   G  +  DY H    +   +   R++   R +VV F              
Sbjct: 316 RRFELVGT-FDGITVVDDYGHHPREIAATIAAARSVWPERPLVVAFQPHRYSRTQALFAD 374

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              +L  AD  I+TD     E          +   +           + + A +     L
Sbjct: 375 FVSSLAAADRVILTDIYSAGEKALPGVTGRALAEAMAAQGMSVRFLPDLLTAPQQIRAEL 434

Query: 457 NKQDVLVVAGKG 468
               VL+  G G
Sbjct: 435 PAGAVLLTLGAG 446


>gi|260576884|ref|ZP_05844867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
 gi|259020921|gb|EEW24234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
          Length = 478

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 156/463 (33%), Gaps = 58/463 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +Q G +FVA+   + DGH F+             ++A  +      + +N 
Sbjct: 25  HGVSIDTRTLQPGDLFVALKDVR-DGHDFVAA------ALAKGAAAALVSRIPEGVAANA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +    L         +    ++ VTG+ GK+S    ++ +    G         
Sbjct: 78  PLLIVPDVLAGLEALGRAGRARARARVIGVTGSVGKTSTKEMLRCMLLGQGSVHA----- 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209
                       +  +   +   L+ L +     V     +H G         +L     
Sbjct: 133 ---------AEASYNNHWGVPLTLARLPATADFAVIEIGMNHPGEIAPLARMARLHVALI 183

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+      +     K  + + L P    A++  D A S  +++ A     R L+
Sbjct: 184 TTIATAHLAAFDGLEGIAREKATIIQGLEP-GGIAVLPTDLAVSPVLLRAASA--VRSLT 240

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  +     +  V    +   V  S  G         PG     NA+    +  A+ +D
Sbjct: 241 FGTAKSADFQMLDVTLTADATIVQASHHGARRLLKLSAPGRHFAMNAMGCLAVAEALSLD 300

Query: 329 SALVLEHLEKLHVVPGRFEFV-----GTNSRGGRIYVD-YAHTSNSLEMILKNIRT---- 378
             +    L +     GR           +     +  D Y     SL   L+ +      
Sbjct: 301 PTIATHDLGRWQPPAGRGMRERIVLDAVDDLSFELIDDAYNANPASLAAALEVLAASQPT 360

Query: 379 -----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
                I  GR I + G   +  +G+  +   +A +    AI T               ++
Sbjct: 361 DGVGRIQHGRRIAILGDMLELGEGEAALHVAVAANPHLAAISTIHC---------VGPLM 411

Query: 434 HGIPGFIEKGNRIE--A-----IRTAIEMLNKQDVLVVAG-KG 468
            G+   + K  R E  A     +  A  +++  D+++V G KG
Sbjct: 412 RGLHDALPKRQRGEWVATAPELLARAATLVDAGDIVLVKGSKG 454


>gi|311741530|ref|ZP_07715354.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303700|gb|EFQ79779.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 487

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 152/431 (35%), Gaps = 60/431 (13%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    + +   + P++   +    L          H + +LA  GT GK
Sbjct: 75  VVVTSFAAIPQDNPELVAAKDNDIPVIRRSDLLAAL-------MEGHKQVLLA--GTHGK 125

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G   SF IG     +                        + G T  
Sbjct: 126 TSTTSMTVSAMQHAGLDPSFAIGGQLNRAGTN---------------------AHGGTGE 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +  A +   D   L          T +  DH+D+  +++AYF       + + P+    +
Sbjct: 165 AFVAEADESDASLLRY-SPDVAVLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLV 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQVTISV 295
           + A+D ++    +RA   G  V++ G               +  ++  A      V + +
Sbjct: 224 VCAEDEHAARAGERALERGINVVAYGSPEKSFTSTVPLAAELVREETTAEGMDTTVNLDL 283

Query: 296 E--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
               +   +   +PG   V N++ A    +  G   A + E L     V  RFE+   V 
Sbjct: 284 PSVSETVRYELQIPGHHMVLNSMGALIAGVLSGGAPAAIAEGLADFGGVRRRFEYRGSVD 343

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-----TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              +  R++ DYAH    +  +L+  R         GR+I  F         +       
Sbjct: 344 KQGKPVRVFDDYAHHPTEVAAVLRAARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQ 403

Query: 406 ALDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           AL LAD A+V D     E P +     I  + +      I + +   A R  + ++   D
Sbjct: 404 ALSLADAAVVLDIYGAREQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGD 463

Query: 461 VLVVAGKGHET 471
           V++  G G  T
Sbjct: 464 VVLTIGAGSVT 474


>gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1]
 gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1]
          Length = 844

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 89/469 (18%), Positives = 162/469 (34%), Gaps = 44/469 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D  +L+            R+ +  S DSR   AG +F+A+   + DGH +I  A+A GA 
Sbjct: 3   DLDDLLAAGGRLASPVYARQFSGFSYDSRLTAAGELFLALRTPRGDGHAYIADALAAGAT 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++               SNT ++V D+     + +A+    +    ++ VTG+ GK+S 
Sbjct: 63  GVICEK-------PPADLSNTTMIVTDDPALLAARWAAARLRQVAPRVIGVTGSVGKTSA 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +      +                +R +  S I L  +L+ L       V    
Sbjct: 116 TRAIAAVLSGLAPT--------------FRSRRSFNSLIGLPVSLARLQDDHRFAVLEYG 161

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           +++  + HRL  +        T+     +    +          L   L P +  A++  
Sbjct: 162 TAYPGELHRLTALFPPHVAVVTSAAPMRLSAFGSVADLVREYGALVAAL-PVDGWAVVNG 220

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD     +         RVL+ G      +  +      N  ++ +   G+  D + PL 
Sbjct: 221 DDP---ALAGLCDTTRARVLTFGTGASCDLRGEAPQYALNGTRMRVCYRGESVDTVIPLI 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  V  AL A G+ +  G+      E L  +    GR       S    I        +
Sbjct: 278 GEPAVGAALAAVGVALVCGMTLERAAERLALVEPPAGRLRPHLARSSAIVIDDTVGAEPS 337

Query: 368 SLEMILKNIRTITSGRIIVVF------GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           ++   L+ +  + + R I V                    +G++A   AD+ I   D   
Sbjct: 338 AMLAALRTLAILPAQRRIAVLGDLPADSSIPGEQNDTYAAIGRLAARTADLLIWKGD--A 395

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAG 466
                +    +  G+   +        I  A+E     L   D+++V G
Sbjct: 396 GTHVMRAVQRVRTGMSATLVHT-----IAGALEALPPDLGAGDLVLVCG 439


>gi|294792040|ref|ZP_06757188.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
 gi|294457270|gb|EFG25632.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
          Length = 460

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 148/433 (34%), Gaps = 55/433 (12%)

Query: 51  GNKED-GH--LFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++      G +AIV S+A    +    A       IL   +  K +   
Sbjct: 50  GATVHIGHNKEYV-----NGVDAIVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     + +AV G  GK+S  S + QI   +        PT  I       + ++ 
Sbjct: 105 ---------TDGIAVAGAHGKTSTTSMIGQILVEANAD-----PTVIIGGEVDYLKGSSC 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   +    S G                    +       TN+  DH+D+++T   
Sbjct: 151 LGKGHFSVVEADESDGSFLK----------------LHPHTIVITNIEDDHMDHYKTMDN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP+   AI+  D+   + VM R        ++ G +    ++ K    
Sbjct: 195 LLNAFCE-FVETLPEAGKAIVCGDNENIRYVMSRVKRTF---ITYGLEDNNDYVAKNIHY 250

Query: 286 HNKQQV-TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVV 342
            +   V  +  +G +       +PGE  V N+L A  +     G+++  + + L K    
Sbjct: 251 VDSSLVYDVYHKGINISRISLRVPGEHNVLNSLAAFIVAHECCGVENRFITKALGKFIGA 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RFE  G  + G  +  DYAH    ++  L+  + +   R+I VF              
Sbjct: 311 KRRFETKGHVA-GVWVVDDYAHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKDE 369

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-M 455
              A   AD   +TD     EDP        I   +       +     ++ I   +  +
Sbjct: 370 FATAFTSADEIYMTDIYSSGEDPIAGIDGRTIPDAVEAATNKVVHYVPSVDDIPAVLAKI 429

Query: 456 LNKQDVLVVAGKG 468
           +   D+++  G G
Sbjct: 430 VRPNDLVITMGAG 442


>gi|15889377|ref|NP_355058.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium tumefaciens
           str. C58]
 gi|23821880|sp|Q8UDM9|MURC_AGRT5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15157227|gb|AAK87843.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium tumefaciens str.
           C58]
          Length = 471

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 143/417 (34%), Gaps = 47/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + +V        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKNNPELIAAREKHLPIVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + + +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVATLLE-AGNLDPTVINGGIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE----GKDFDF 302
            D    + ++ R  +   +V++ G      +    V     +    + +     GK F F
Sbjct: 218 LDHPEVQALVGRIEDR--KVITYGENPQADVRFSNVRIDGTRSIFDVEIRRRRTGKIFSF 275

Query: 303 ---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG   V NA  A  +   +GI  A + + L     V  RF   G  + G +++
Sbjct: 276 KDLVLPMPGRHNVSNATAAIAVANRLGISEADIKKGLASFAGVKRRFTLTG-EANGVQVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L   R    GRII V                    + AD  ++    
Sbjct: 335 DDYGHHPVEIKAVLAAAREACKGRIIAVHQPHRYSRLSSLFDDFAHCFNDADTILLAPVY 394

Query: 420 PRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              EDP      E + + I   G         R +       + N  D +V+ G G+
Sbjct: 395 AAGEDPIEGASSEALVSAIKAAGHRDARFLEKREDLASQVAAIANPGDFVVLLGAGN 451


>gi|71282429|ref|YP_271112.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
 gi|109892700|sp|Q47VR0|MURC_COLP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71148169|gb|AAZ28642.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
          Length = 503

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 147/426 (34%), Gaps = 47/426 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      +   A  IVVS+A + ++          I VV    + L+      +G    
Sbjct: 79  GHQ-AENVVQ--ASVIVVSTAINSENPELVKAKELRIPVVRRA-EMLAELMRFRHG---- 130

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S +  I  +      ++ PT  I                L  +  
Sbjct: 131 --IAIAGTHGKTTTTSLIASIFAQ-----GKLDPTFVIGGLLNSAGTN----ARLGSSRY 179

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++    +  S               ++ +    TN+  DH++ +Q            F 
Sbjct: 180 LVAEADESDASFLH------------LQPMVSVITNIDADHMETYQGDFEKLKDTYIEFL 227

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  D+   +E++ R      +V++ G+ +   +              T+ 
Sbjct: 228 HNLPFYGLAVVCIDNPVVRELLPRISR---QVITYGFSKDADVRAVNYQQNGAVSHFTVE 284

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
           VEG++  +    LPG+  V NAL    +    G++   + + L +   +  RFE +    
Sbjct: 285 VEGQEPLEMSVNLPGQHNVLNALAGVAVAKDEGVNDEAICKALTEFEGIGRRFEKLTDFS 344

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T +    +  DY H  + ++  +  +R      R+++VF                  L  
Sbjct: 345 TAAGDMVLVDDYGHHPSEVKATILAMRQGWPDKRLVMVFQPHRYSRTRDLYEDFVEVLSE 404

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D   + D     E P      + +   I + G    +   +  +  +     L   D++
Sbjct: 405 VDCLFLLDVYAAGETPISSADSKSLARSIRLRGQIEPVYVSDVDKLPQLLATQLQDNDMV 464

Query: 463 VVAGKG 468
           +  G G
Sbjct: 465 ITQGAG 470


>gi|110680531|ref|YP_683538.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter denitrificans
           OCh 114]
 gi|123361696|sp|Q163J1|MURC_ROSDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109456647|gb|ABG32852.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter denitrificans OCh
           114]
          Length = 468

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 139/420 (33%), Gaps = 39/420 (9%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             GA   V     +++D      S+ I+     L     R    +  + + G+     + 
Sbjct: 54  ELGARVFVGQRPENIEDAEVIVISSAIKPGNAELDAARARGLPIVRRAEMLGELMRLKSN 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  + V  +   +G     +     I ++  + R      +         
Sbjct: 114 IAVAGTHGKTTTTTMVATLLD-AGEFDPTVVNGGIIHAYGSNARKGEGEWM--------- 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VEA       +RL          TN+  +H+++              F   
Sbjct: 164 --------VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGDFDTLRQG-FLDFVSN 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVE 296
           +P    A+   D    + ++ +  +          Q     +    A       V +  E
Sbjct: 212 IPFYGVAVCCTDHPEVQALVGKITDRRVITYGFNAQADVRAVNLRYAGGVAYFDVALQAE 271

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G   +    P+PG+  V NAL A  +   +G+ + ++   L     V  RF  VG    G
Sbjct: 272 GTVIEGCSLPMPGDHNVSNALSAIAVARHLGMKAEVIKTALAAFGGVNRRFTRVG-EIDG 330

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I  DY H    +  +LK  R  T GR+I V                    + AD+  +
Sbjct: 331 VTIIDDYGHHPVEIAAVLKAARQATEGRVIAVHQPHRYSRLSSLFDDFCACFNDADVVGI 390

Query: 416 TDDNPRSED--PEKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
            +     ED  P   R +++ G+     +  R     + +   + E     D++V  G G
Sbjct: 391 AEVYAAGEDPIPGAGRDDLVAGLIRHGHRHARAVVGEDDLERLVREQTRPGDMVVCLGAG 450


>gi|255326230|ref|ZP_05367316.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
 gi|255296684|gb|EET76015.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
          Length = 495

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 95/429 (22%), Positives = 156/429 (36%), Gaps = 45/429 (10%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFA----SRLYGKHPE 115
           A GA   V   A ++ D      S  IR + P LV    +    L      + + G+   
Sbjct: 67  AAGARVGVPQQAENIVDVDTVVISTAIREDNPELVAARAQGLRVLHRSEALAAVMGE--S 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            ++AV GT GKS+ +S +  +  + G   SF +G                P  I++A+A 
Sbjct: 125 QVVAVAGTHGKSTTSSMISVMFDQLGAQPSFAVGTVIAGRGTNAHLGAQGPETIFVAEAD 184

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               S  V +                         TN+  DH+D+++T +  F A  R F
Sbjct: 185 ESDGSF-VRYC------------------PAIAVVTNVEPDHLDFYETDERVFEAFNR-F 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQ 289
              L      +  ADDA + ++  R+  AG  V++ G                 +  +  
Sbjct: 225 VGSLAPNGVVVTCADDAGAADLAARSRAAGVPVVTYGEAADADLRISEITSAGSSSSSHL 284

Query: 290 QVTISVEG----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +    G     + D    +PG     NA  A    +  G ++A +   L        R
Sbjct: 285 SWSFECRGVRYEGEQDLALKVPGIHNQLNASAAFASALISGYEAADIARALADFVGADRR 344

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGK 404
           F   G  + G +++ DYAH    +   L+  RT+  G  + V+F         +      
Sbjct: 345 FTLRGEVA-GVKVFDDYAHHPTEVFRALQTGRTVADGHNLYVIFQPHLFSRTREFAKEFA 403

Query: 405 IALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
            AL ++D A V D  P  E P E + +E+I G     +       AI   +      D++
Sbjct: 404 QALSMSDRAHVLDIYPARELPIEGVTSELITGAGFSEVRYATAESAIEDIVACAQDGDIV 463

Query: 463 VVAGKGHET 471
           +  G G  T
Sbjct: 464 MTVGAGDVT 472


>gi|294085900|ref|YP_003552660.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665475|gb|ADE40576.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 473

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 144/418 (34%), Gaps = 48/418 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A    +          + +V    + L       +       +AV GT GK+
Sbjct: 68  AALVVTSTAIKADNPEVVAARAGFLPIVHRA-EMLGELMRLRW------SVAVAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   + +    I     I+ +  + RL                      + V
Sbjct: 121 TTTSLVATLLDGAQIDPTVING-GIITGWGSNARLGKG-----------------KWMVV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA            +K      TN+  +H+D+H + +A   A    F   +P    A + 
Sbjct: 163 EADESDGS---FAKLKPTVAVVTNIDPEHLDHHGSFEALETA-FLNFVSSIPFYGFATLC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + +M  AH    R+++ G      +    +          + +  +        
Sbjct: 219 IDHPAVQRMM--AHIKDRRIITYGMSANADVRATNLRVEGRNMLFDVLLSDRLVGEMERI 276

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            + LFP+ G+  V N L A  + + + ID+  + + L     V  RFE  G  S G  I 
Sbjct: 277 DNVLFPMLGDHNVQNCLAAIAVALEMNIDAKKIKDSLAAFGGVGRRFETKGV-SDGVTII 335

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    ++  L+  R +    ++I V                    + AD  +V D 
Sbjct: 336 DDYGHHPVEIKAALQAGRMMCGDNKLIAVVQPHRYSRLADLFTDFCGCFNDADDVLVADV 395

Query: 419 NPRSEDPEK--IRAEIIHGIPGFIEKG----NRIEAIRTAIEM-LNKQDVLVVAGKGH 469
               E P +   +A ++ G+     KG    +   A+   I    NK D+++  G G 
Sbjct: 396 YAAGETPIEGFDKAALVEGLRDHGHKGPAALDSQSALAQEIMNRTNKGDLVMCLGAGD 453


>gi|239947619|ref|ZP_04699372.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921895|gb|EER21919.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 321

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 115/305 (37%), Gaps = 49/305 (16%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSQDVKKGDLFIALQGNR-DGHDYVLDAIDKGAVAVIVSKQIDIADKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---------- 140
            I++V++  + L   A           +A+TG+ GK+S    ++ +   +          
Sbjct: 76  -IILVEDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKTLLTEANYKSLDLLYN 134

Query: 141 ---------------------------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
                                      GL+       S I      +R    + + L   
Sbjct: 135 EANKEEFEGNTERSTAAYTLVREDVSTGLTYKLPLEASYIRGLIFASRGNFNNHLGLLIN 194

Query: 174 LSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           L+ ++      +     +H G  +  +  +K      TN+   H+++  + +    AK  
Sbjct: 195 LASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSFEEIAEAKCE 254

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +FE    K   A+I AD     +++      +   + S G   K    + V   +  +QV
Sbjct: 255 IFENF-SKNDIAVINADTNCYNKILSILKKLSITDIHSFGRSSK-TSAELVLYENLGEQV 312

Query: 292 TISVE 296
            +  +
Sbjct: 313 YLKYK 317


>gi|44888240|sp|Q9F1M9|MURC_SHEVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 144/427 (33%), Gaps = 47/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q    G + +VVS+A   ++          I VV    + L+      +G    
Sbjct: 72  GH-HADQV--HGTDVVVVSTAIDAENPELVAAKELRIPVVQRA-EMLAELMRYRHG---- 123

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  I  ++        PT  I                    ++
Sbjct: 124 --VAVAGTHGKTTTTSLIASIYAQADRD-----PTFVIGGLLNSAGTNARLGNSRY-LIA 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D +        +    F 
Sbjct: 176 EADESDASFL---------------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFIDFL 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++      G ++++ G+ +   I              T+ 
Sbjct: 221 HNLPFYGVAVMCIDDPVVRELL---PKVGRKIVTYGFSEDADIQALNFVQQGYSSHFTLR 277

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G +D   +  LPGE  V NAL +  +     I+   ++  L +   +  RF+ +G   
Sbjct: 278 RDGVEDIAVMVNLPGEHNVLNALASIAVATEDEIEDEAIVLALAQFEGIGRRFQQLGTFA 337

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T+     +  DY H  + +   +K  R      R+++++                  L  
Sbjct: 338 TSKGEVMLVDDYGHHPSEVAATIKAARLGWPDKRLVMIYQPHRYSRTRDLYDDFVEVLSQ 397

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D     E P        +   I   G    I      + +    ++L   D+L
Sbjct: 398 VDCLILLDVYSAGEAPVPGADSRALCRSIRQRGQLDPIFVAGTEQLLSLLPDVLQDGDLL 457

Query: 463 VVAGKGH 469
           +  G G+
Sbjct: 458 LTQGAGN 464


>gi|107100004|ref|ZP_01363922.1| hypothetical protein PaerPA_01001025 [Pseudomonas aeruginosa PACS2]
 gi|296391120|ref|ZP_06880595.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAb1]
          Length = 469

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 143/439 (32%), Gaps = 52/439 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 55  GHQ-AENA--DGADVLVVSSAINRANPEVASALERRIPVVPRA-EMLAELMRYRHG---- 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +        ++ 
Sbjct: 107 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGASRYLVAEADESD 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +                          ++ +    TN+  DH+  +             F
Sbjct: 165 ASFLH----------------------LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEF 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G  +   +    +     +   T 
Sbjct: 203 LHNLPFYGLAVMCVDDPVVREILPQIARP---TVTYGLSEDADVRAINIRQEGMRTWFTV 259

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +  E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G  
Sbjct: 260 LRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 319

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K IR      R+++V+                  L 
Sbjct: 320 QVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDLYEDFVQVLG 379

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDV 461
            A++ ++ +  P  E+P       ++   I            R   +   ++ +L   D+
Sbjct: 380 EANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAGDI 439

Query: 462 LVVAGKGHETV---HIVTN 477
           L+  G G        ++ N
Sbjct: 440 LLCQGAGDVGGLAPQLIKN 458


>gi|187777289|ref|ZP_02993762.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC
           15579]
 gi|187774217|gb|EDU38019.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC
           15579]
          Length = 873

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 137/373 (36%), Gaps = 27/373 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +       G     +G T+T   +  +  +          A + L+++ V    +E + 
Sbjct: 494 LIAHTLSLLGKK---VGMTTTGGIYINNKCIDKGDTTGYYSARTVLTNKEVEVAVLELAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +     K  L  E + K+   +I AD
Sbjct: 551 GGLIKAGLPYDLADVGVITNITEDHLGLGGINTLEDMAYVKS-LVGEAVKKDGYVVINAD 609

Query: 250 DAYSKEVMKRA--------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGK 298
           D  S  ++ R          N    ++S     K + +     I   Q +  +   +   
Sbjct: 610 DKASLNIIDRMTSKIILFTKNKNNPIVSKYLNNKNLIVYLEENIIYLQNLNENKEIINVN 669

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGR 357
                      + + N + +    IA+G+D   + E LE           F   N  G  
Sbjct: 670 KAPITLGGKLTYNIENIMASIAALIALGLDINTIREGLESFTNEEQNPGRFNMYNVHGTN 729

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DY H     +++L++++ I   RII V G  GDR       +G I  +  D   V +
Sbjct: 730 VILDYGHNIEGYKVVLESVKKIDHKRIIGVIGVPGDRTNSSTLKVGNICGENFDYIYVKE 789

Query: 418 D-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D + R  +  +I   +  GI              +  EA++ AIE     D++++  +  
Sbjct: 790 DRDKRGREHGEIAGLLKKGILEMGFKNSKLDIILDEEEALKKAIEFSEPGDLVIMFFEEF 849

Query: 470 ET-VHIVTNGEKK 481
           E   +IV N  KK
Sbjct: 850 EPAANIVKNKIKK 862


>gi|114570627|ref|YP_757307.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
 gi|122315581|sp|Q0AMW8|MURC_MARMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114341089|gb|ABI66369.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
          Length = 468

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 86/415 (20%), Positives = 138/415 (33%), Gaps = 43/415 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA AIVVSSA    +          I VV        L   +         +AV GT GK
Sbjct: 69  GAGAIVVSSAIKPDNPELVAARAAKIPVVRRAEMLAELMRLKFA-------VAVGGTHGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +   +G+    I     IS++  + ++                        
Sbjct: 122 TTTTSLVAVLMDAAGVDPTVING-GIISAYGSNAKVGLGDW------------------- 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
             A            ++      TN+  +H++++ T      A  + F E LP    A++
Sbjct: 162 -MAVEADESDGSFLKLRSTVAIVTNIDPEHMEHYGTFDVLRQAFFQ-FVENLPFYGFAVL 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKD----FD 301
             D    + +  R  +          Q        K+        V   + G+D     D
Sbjct: 220 CTDHPEVQSLASRVEDRRVITYGQNPQADARLENLKMDPSGATFDVRFRLRGQDETVWRD 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+ GE  V NA+ A      +G+  A     L +   V  RF   G   +G  I  D
Sbjct: 280 IFLPMMGEHNVLNAVAALATARELGLTEAGAKTALGQFGGVKRRFTRTGEW-KGAAIIDD 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H    +  +LK  R   +G++I V                    + AD  +VT     
Sbjct: 339 YGHHPVEIAAVLKAARQAATGKVIAVMQPHRYSRLHDLFDDFSTCFNDADSVLVTPVYTA 398

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNR------IEAIRT-AIEMLNKQDVLVVAGKGH 469
            EDP +  A+  H +      G+R       +A+     +   + DV+V  G G 
Sbjct: 399 GEDPIE-GADQAHLVESLRSHGHRDAGATTRDAVAADVAKRAGEGDVVVCLGAGD 452


>gi|167571348|ref|ZP_02364222.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           C6786]
          Length = 464

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 139/427 (32%), Gaps = 49/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARRLGVPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +    G   +F IG   T +                 ++ 
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGTGDFIVAEADESD 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   +                      +  +    TN+  DH+D +    A        F
Sbjct: 166 ASFLN----------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI 293
            + LP    A++  DD   ++++         V+  G+        + V A   +   T+
Sbjct: 204 TQRLPFYGSAVVCIDDPNVRQIVPLISKP---VVRYGFAPDAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
             EG++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+    +
Sbjct: 261 LREGREPLPVVLNLPGLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
                   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 321 PVAGGAYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 380

Query: 409 LADIAIVTDDNPRSEDPEKI-------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D  ++T+     E P          RA    G    +      E      ++    DV
Sbjct: 381 TVDALVLTEVYAAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARVGDV 440

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 441 VITMGAG 447


>gi|256379761|ref|YP_003103421.1| UDP-N-acetylmuramate--L-alanine ligase [Actinosynnema mirum DSM
           43827]
 gi|255924064|gb|ACU39575.1| UDP-N-acetylmuramate/alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 466

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/453 (23%), Positives = 157/453 (34%), Gaps = 56/453 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKED---GHLFIP-QAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           DSR +      +A+         GH       +  G  A+VVS+A    +          
Sbjct: 39  DSRTV------LALRAQGAHVAVGHDGANLDQLDGGPTAVVVSTAIREDNPELVAARERG 92

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPT 150
           + V+       +L            +  V GT GK+S  S +    Q   +   F IG  
Sbjct: 93  VAVLRRAEALAALMLDH-------RVACVAGTHGKTSTTSMLTVALQHCRMDPSFAIGGD 145

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              S                          G   V+    S G                T
Sbjct: 146 LNESGANAHQG------------------AGGVFVAEADESDGSFL----FFAPSVAVVT 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D+H T +AY  A    F E +      I  ADD  S  +  RA   G RV   
Sbjct: 184 NVEADHLDHHGTVEAYV-AVFDEFLERIEPGGVLIACADDEGSAALADRAEKRGIRVRRY 242

Query: 271 GYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           G          L +           + ++G+  D    +PGE    NA+ A    + +G 
Sbjct: 243 GRAATGEGAAVLVEHRPDGAGGLAVVELDGERLDVRVAVPGEHMAGNAVAALLAAVELGA 302

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIV 386
           D   VLE L     V  RFEF G  + G R+Y DYAH    +   LK  R +   GR++V
Sbjct: 303 DRWGVLEGLAAFGGVRRRFEFKGVAA-GVRVYDDYAHHPTEVAAQLKAARPVAGDGRLVV 361

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAE---IIHGIPG 438
           VF                 AL LAD  +V D     EDPE     ++ A+   +  G   
Sbjct: 362 VFQPHLYSRTKTFAAEFGKALALADEVVVLDVYGAREDPEPGVTGELVADAVPLEAGRVR 421

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +   +R+        ++ + D++V  G G  T
Sbjct: 422 HVPSFDRVP--ELVAGLVREGDLVVTMGAGDVT 452


>gi|300871879|ref|YP_003786752.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
 gi|300689580|gb|ADK32251.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
          Length = 448

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/469 (17%), Positives = 162/469 (34%), Gaps = 51/469 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIP 61
           L+D+I        N   IF      + + ++S+DSR       +F+AI G+K +G+ F  
Sbjct: 6   LKDIIK--IANETNSKCIFNYTDENKNL-QISTDSREDFNENKLFLAIKGDKFNGNDFAL 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
               +G    ++S        +  +  +  ++  +++  F    A     +    ++++T
Sbjct: 63  DTYNKGCRFFILSE-------NINMPKDANVVYTNDSVLFFIKLAREYRRRFNIKVVSIT 115

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++                 +     T  +F         + I + K +  L    
Sbjct: 116 GSCGKTTTKELTALFLGT------KYKTLKTEGNF--------NNEIGVPKTIFNLDDSY 161

Query: 182 VTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              V     +H  +  R+ + I+       N+   HI +  + +    AK  LF      
Sbjct: 162 EMAVIEAGMNHKNELLRISEAIEADTVIINNVEPVHIAFLGSLENIALAKSELFNNAKEN 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AII  +      ++  A N   + +    +     +KK+           S   K+ 
Sbjct: 222 ---AIINKNTNKVDILLSEAKNKKIKNI---IEADIKEIKKINDN--------SFVYKNV 267

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   L G+F + N L+A        ID     + L        R + +  N+    I  
Sbjct: 268 TFNHNLIGDFNLQNILMALKAAELYNIDLEECAKALTNYQNQKNRMQIIKINNCSI-IND 326

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-----ALDLADIAIV 415
            Y     +L+ +L  +      R I + G   + +        +I     +L   +  I 
Sbjct: 327 CYNSNPTALKNMLIYLSKREEKRKIAIIGDMLETETQNSSFHKEIGIFINSLKNINEVIT 386

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             DN      +KI  E+      F +    I  I   I+  N++  +++
Sbjct: 387 VGDNS-----QKIDNEVTCSKMHFKKVEESINTIIDIIKNSNEETAILI 430


>gi|269798173|ref|YP_003312073.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282850402|ref|ZP_06259781.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
 gi|269094802|gb|ACZ24793.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282579895|gb|EFB85299.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
          Length = 460

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 148/433 (34%), Gaps = 55/433 (12%)

Query: 51  GNKED-GH--LFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++      G +AIV S+A    +    A       IL   +  K +   
Sbjct: 50  GATVHIGHNKEYV-----NGVDAIVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     + +AV G  GK+S  S + QI   +        PT  I       + ++ 
Sbjct: 105 ---------TDGIAVAGAHGKTSTTSMIGQILVEANAD-----PTVIIGGEVDYLKGSSC 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   +    S G                    +       TN+  DH+D+++T   
Sbjct: 151 LGKGHFSVVEADESDGSFLK----------------LHPHTIVITNIEDDHMDHYKTMDN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP+   AI+  D+   + VM R        ++ G +    ++ K    
Sbjct: 195 LLNAFCE-FVETLPEAGKAIVCGDNENIRYVMSRVKRTF---ITYGLEDNNDYVAKNIHY 250

Query: 286 HNKQQV-TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVV 342
            +   V  +  +G +       +PGE  V N+L A  +     G+++  + + L K    
Sbjct: 251 VDSSLVYDVYHKGINISRISLRVPGEHNVLNSLAAFIVAHECCGVENRFITKALGKFIGA 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RFE  G  + G  +  DYAH    ++  L+  + +   R+I VF              
Sbjct: 311 KRRFETKGHVA-GVWVVDDYAHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKDE 369

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-M 455
              A   AD   +TD     EDP        I   +       +     ++ I   +  +
Sbjct: 370 FATAFTSADEIYMTDIYSSGEDPIAGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKI 429

Query: 456 LNKQDVLVVAGKG 468
           +   D+++  G G
Sbjct: 430 VRPNDLVITMGAG 442


>gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
 gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
          Length = 821

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 163/476 (34%), Gaps = 45/476 (9%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           L       R  +I+ + +DSR +      +F A+   + DGH ++ +   +G    VV  
Sbjct: 12  LGAKRFGNRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVGE 71

Query: 76  -AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +Q F      +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ 
Sbjct: 72  LPADMQSFQ-----DANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLY 126

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           Q+               T S  + ++++  P  ++L    + L+           S  G 
Sbjct: 127 QLLS--------PDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEA-----GISEMGE 173

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-S 253
            +     IK   G  TN+G  H +   + Q     K+ LF++        +   D+   S
Sbjct: 174 MEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDC----DVIVYDGDNELIS 229

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V K    +     S     + + ++ +    +   +     G   +F  P   +  + 
Sbjct: 230 SCVAKSLFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIE 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L    + + + +    + E + +L  +  R E     +    I   Y     SL++ L
Sbjct: 290 NSLHCLAVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIAL 349

Query: 374 KNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +         +  ++     +  Q  + +  ++A  +    +        E    +  
Sbjct: 350 DFMSRRSDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGV--------EKIVGVGE 401

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI      F  +    +      E L + D+L     G     I+  G +    D 
Sbjct: 402 EIRTAAARFEIE----KYFFRTTEELLESDLL----AGLRNEVILVKGSRAFHFDR 449


>gi|294506461|ref|YP_003570519.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
 gi|294342789|emb|CBH23567.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
          Length = 879

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 141/418 (33%), Gaps = 54/418 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +   T  +    + +    + L       +G      + V GT GK+
Sbjct: 477 ADVVVYSSAVDPDENPETREAERRRISLIPRAEMLGELIRMKFG------VGVAGTHGKT 530

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    +    G     I     +++F  +                         + +
Sbjct: 531 TTTSMAGLVVAEGGFDPTVI-VGGKVTAFGSNAITGEGD-----------------VLVI 572

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA  +     RL          T++  DH+D ++   A   A    +   +P    AI+ 
Sbjct: 573 EADEYDRTFLRL---TPSLAVITSIEEDHLDVYEDLAAIQAA-FTQYANSVPFFGAAILC 628

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DD   + ++    +   RV++ G  +   +  + V       +  + V G+        
Sbjct: 629 LDDPNVQAIVG---DVERRVVTYGTTRQAEVRGENVRREGMTTRFDVVVRGERLGTIELH 685

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL A  +   + I    V + L     V  RFE  G    G  +  DYAH 
Sbjct: 686 VPGMHNVRNALAAVAVGQELEISFERVRDGLGTFTGVRRRFEKKGEVG-GITVLDDYAHH 744

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +E  L          R++ VF                 +   AD+ ++TD     E 
Sbjct: 745 PTEIEATLDAAHQGFPDRRVVAVFQPHMYSRTQNFMDEFARSFFNADMLVLTDVYGAREA 804

Query: 425 P--------EKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P           RAE      +H +P   +   R++      E++   DV+++ G G 
Sbjct: 805 PIEGVTGGRLAERAEQFGHRAVHYVPEKTDLPGRLQ------ELVGPGDVVLMLGAGD 856


>gi|152996626|ref|YP_001341461.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
 gi|189028999|sp|A6VYJ7|MURC_MARMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150837550|gb|ABR71526.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
          Length = 473

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 140/416 (33%), Gaps = 45/416 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS+A + Q+          I +V    + L+      +G      +AV GT GK+
Sbjct: 76  AHVIVVSTAINEQNPEIIWGKEHRIPIVRRA-EMLAELMRYRHG------IAVAGTHGKT 128

Query: 128 SVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S +  I   +G   +F IG   T +           S  YL    +       + + 
Sbjct: 129 TTTSLMASILAATGEAPTFVIGGRLTSAG----ANAQLGSSAYLV---AEADESDASFL- 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++      TN+  DH+D +             F   LP    A++
Sbjct: 181 --------------HLQPQTVIVTNIDEDHMDTYDGDFEKVKHTFIEFVHNLPFYGLAVL 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   +E++            +  +  F   + V      + +    EG+      P+
Sbjct: 227 CVDDENVREILPTLSRPVL-TYGIDQEADFYATEIVQTGRYCEFLAHRPEGEPLKIRLPM 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDY 362
           PG   V NAL    +   +G+D++ +   L     V  RF+        N        DY
Sbjct: 286 PGRHNVLNALATIAVATDLGVDASAIQAGLMGFEGVGRRFQEQKPLALPNGSNVMFVDDY 345

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H  + +   +K IR      R+++V+                  L   D+ ++ D    
Sbjct: 346 GHHPSEVLATIKAIRAGWPEKRLVMVYQPHRYTRTRDLYEDFVRVLSQVDVLLLLDVYSA 405

Query: 422 SEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
            E P        +   I   G    I  G+  + +R+ +   L + D+L+  G G 
Sbjct: 406 GEAPINGADSRSLCGSIRQRGNVDPIHVGSEAD-LRSILSNVLREGDLLITQGAGD 460


>gi|294675705|ref|YP_003576320.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
 gi|294474525|gb|ADE83913.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
          Length = 1288

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 143/416 (34%), Gaps = 43/416 (10%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
              A+A+ A+ ++ S A               + V    R    + A R         + 
Sbjct: 57  ADPALARAADCVIASPAIPETHVERRAARRAGLPVKSRARALAEVIADR-------QTIC 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V G+ GKS+V + +  I   +G   F     +  +                A+  + L +
Sbjct: 110 VAGSHGKSTVTAMLIHILSAAGQEDFGYMLGAAFA--------------DAARLPARLGA 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V+    +HG     L   +      TNL  +H D++        A    F   LP
Sbjct: 156 PDAPFVTEACEAHG----ALAAWQPSLAILTNLDDEHADHYGGLPGLRRAVAD-FLSRLP 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            E  A+   DD    ++++RA    C  L+ G  G    L+ V         T+ + G D
Sbjct: 211 PEGRAVACGDDPQVLDLLRRAR---CAALTYGL-GADNDLRAVPDGTGG--ATVFLNGTD 264

Query: 300 F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  +PG   + NAL A G+ + +GI  A     L     +  R + V   +R  R+
Sbjct: 265 LGRLSLIVPGRHNLRNALAALGMALTLGIGFATAAGALADFPGLARRLQPVAPGNR-LRL 323

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           + D+AH    +E  L  +R  T GR+I +F                 AL  AD + +   
Sbjct: 324 FDDFAHHPAEIEAALAVLRETTEGRLIAIFEPQLHSRITLMAARFAQALGAADHSYLLPV 383

Query: 419 NPRSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAG 466
               E  +       +      G        +  E +      L   D  ++V+AG
Sbjct: 384 VALGETAQAGNGDAALAEACRAGGLSCDHVSDMSELLARLQADLQ-GDETLVVMAG 438


>gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4]
 gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4]
          Length = 821

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 163/476 (34%), Gaps = 45/476 (9%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           L       R  +I+ + +DSR +      +F A+   + DGH ++ +   +G    VV  
Sbjct: 12  LGAKRFGNRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVGE 71

Query: 76  -AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +Q F      +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ 
Sbjct: 72  LPADMQSFQ-----DANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLY 126

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           Q+               T S  + ++++  P  ++L    + L+           S  G 
Sbjct: 127 QLLS--------PDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEA-----GISEMGE 173

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-S 253
            +     IK   G  TN+G  H +   + Q     K+ LF++        +   D+   S
Sbjct: 174 MEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDC----DVIVYDGDNELIS 229

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V K    +     S     + + ++ +    +   +     G   +F  P   +  + 
Sbjct: 230 SCVAKSLFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIE 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L    + + + +    + E + +L  +  R E     +    I   Y     SL++ L
Sbjct: 290 NSLHCLAVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIAL 349

Query: 374 KNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +         +  ++     +  Q  + +  ++A  +    +        E    +  
Sbjct: 350 DFMSRRSDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGV--------EKIVGVGE 401

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI      F  +    +      E L + D+L     G     I+  G +    D 
Sbjct: 402 EIRTAAARFEIE----KYFFRTTEELLESDLL----AGLRNEVILVKGSRAFHFDR 449


>gi|302537577|ref|ZP_07289919.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
 gi|302446472|gb|EFL18288.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
          Length = 464

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 152/431 (35%), Gaps = 42/431 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A  +VVSSA    +      +   I VV  +       AS +
Sbjct: 54  GATVHIGH--AAGHLATDATCVVVSSAIRADNPELARAAELGIPVVHRSDA----LASVM 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G  P   +AV GT GK++  S +       GL                D        + 
Sbjct: 108 DGLRP---IAVAGTHGKTTTTSMLAVALSALGL----------------DPSYAIGGDLD 148

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              + ++     V     + S     ++             N   DH   + +    + +
Sbjct: 149 APGSNAHHGEGDVFVAEADESDRSFHKY-----TPQVAIILNAELDHHANYASMDEIYES 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNK 288
                 +++P  +  + +  +  ++   + + N    V + G  +   + ++K+      
Sbjct: 204 FETFVGKIVPGGTLVVAHGQEGAAEIAHRVSGNPDLIVRTYGEDETADVRIRKITPRGLT 263

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +V + ++G++  F   +PG    +NA+ A    +A+GI +  +   L K   V  R + 
Sbjct: 264 SEVAVVMDGREIVFTVSVPGRHYAHNAVAALTAGVALGIPADDLAAALGKYTGVKRRLQL 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIAL 407
            G  + G ++   YAH    +   L+ IR+      I VVF         +       AL
Sbjct: 324 KGEAA-GVQVIDSYAHHPTEMTADLEAIRSAAGDSRILVVFQPHLFSRTQELGKEMGQAL 382

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQD 460
            LAD ++V D  P  EDP      E I +           + +   A+   I  M    D
Sbjct: 383 ALADASVVLDIYPAREDPIPGVTSELIISAARTAGADVAAEHD-KTAVADVIAGMAKPGD 441

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 442 LVLTMGAGDVT 452


>gi|134102298|ref|YP_001107959.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003739|ref|ZP_06561712.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|189029030|sp|A4FLV9|MURC_SACEN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133914921|emb|CAM05034.1| UDP-N-acetylmuramate--alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 490

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 111/453 (24%), Positives = 165/453 (36%), Gaps = 56/453 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKED---GHLFIPQAIAQ--G-AEAIVVSSAYSLQDFSATIRSN 89
           DSR +      +A+         GH    + I Q  G   A+VVS+A    +        
Sbjct: 56  DSRTV------LALKAQGAHIALGHR--AENIEQFDGDPTAVVVSTAIRRDNPELVAAQE 107

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             + V+       +L A          +  V GT GK+S  S +    Q           
Sbjct: 108 RGVPVLRRAEALAALMADH-------RVACVAGTHGKTSTTSMLTVALQHC--------- 151

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    D        +  + A ++    GV     + S                   
Sbjct: 152 -------RLDPSFAIGGDLNESGANAHHGDGGVFVAEADESDGSFL-----VFAPSVAVV 199

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+H T +AY     R  E + P     I  ADDA +  +  +A  AG RV  
Sbjct: 200 TNVEPDHLDHHGTAEAYTEVFQRFVERIEP-GGVLIACADDAGAALLADQAEAAGVRVRR 258

Query: 270 VGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G++        +      H    VT+ V G   D    +PGE    NA+ A    + +G
Sbjct: 259 YGHEVTADGDARMVGYRPEHGSGVVTVEVSGDRLDVQVAVPGEHMAANAVAALLAGLELG 318

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRII 385
                +LE L     V  RFEF G  + G R+Y DYAH    ++  L+  R +   GR++
Sbjct: 319 APLEGLLEGLAAFGGVRRRFEFKG-RADGVRVYDDYAHHPTEVDAQLRAARPVVGDGRLV 377

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KIRAE-IIHGIPGFIEKG 443
           VVF                 AL LAD  +V D     EDP+  +  E I   +P   E+ 
Sbjct: 378 VVFQPHLYSRTAAFSGEFATALGLADEVVVLDVYGAREDPQPGVTGELIAESVPLPAERV 437

Query: 444 NRIEAIRTAIE-----MLNKQDVLVVAGKGHET 471
           +  EA  TA       ++   D+++  G G  T
Sbjct: 438 H-YEASFTAAAPLVAGLVQPGDLVLTMGAGDVT 469


>gi|255262234|ref|ZP_05341576.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
 gi|255104569|gb|EET47243.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
          Length = 466

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 147/415 (35%), Gaps = 47/415 (11%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE IV+SSA      ++ A      PI+        L            ++ +AV GT 
Sbjct: 71  GAEVIVISSAIKPGNAEYDAARAKGLPIVRRAEMLAELMRL---------KSNVAVAGTH 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +    G+    I     I ++  + R+     +                
Sbjct: 122 GKTTTTTMVSALLDAGGIDPTVING-GIIHAYGSNARVGQGDWM---------------- 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VEA       +RL          TN+  +H+++  +           F   +P    A
Sbjct: 165 -VVEADESDGTFNRLPAT---IAVVTNIDPEHMEHWGSFDNLRQG-FLDFVSNIPFYGLA 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDF- 302
           +   D    + ++ +  +   RV++ G+  +  +    +          I ++ +D    
Sbjct: 220 VCCTDHPEVQALVGKITDR--RVVTYGFNAQVDVRAINLSYKDGSAYFDIQLQSEDQVIE 277

Query: 303 --LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             + P+PG+  V NAL A  +   +G+ S  +   LE    V  RF  VG    G  I  
Sbjct: 278 GCMLPMPGDHNVSNALAAVAVSRHLGMKSEEIKTALENFGGVNRRFTRVG-KVNGVTIID 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH    +   LK  R    GR+I V                    + AD+A + +   
Sbjct: 337 DYAHHPVEIAAALKAARQACDGRVIAVHQPHRYSRLHDLFDDFCGCFNDADVAAIAEVFA 396

Query: 421 RSEDP--EKIRAEIIHGIPGFIEKGNR----IEAIRTAI-EMLNKQDVLVVAGKG 468
             EDP     R +++ G+     +  R     E +   + E     D++V  G G
Sbjct: 397 AGEDPIEGASRDDLVAGMIRSGHRHARSILGEEDLERLVREQTKPGDMVVCLGAG 451


>gi|152989249|ref|YP_001350319.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa PA7]
 gi|189029019|sp|A6VB84|MURC_PSEA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150964407|gb|ABR86432.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PA7]
          Length = 480

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 143/439 (32%), Gaps = 52/439 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 66  GHQ-AENA--DGADVLVVSSAINRANPEVASALERRIPVVPRA-EMLAELMRYRHG---- 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +        ++ 
Sbjct: 118 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGASRYLVAEADESD 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +                          ++ +    TN+  DH+  +             F
Sbjct: 176 ASFLH----------------------LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEF 213

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G  +   +    +     +   T 
Sbjct: 214 LHNLPFYGLAVMCVDDPVVREILPQIARP---TVTYGLSEDADVRAINIRQEGMRTWFTV 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +  E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G  
Sbjct: 271 LRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 330

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K IR      R+++V+                  L 
Sbjct: 331 QVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDLYEDFVQVLG 390

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDV 461
            A++ ++ +  P  E+P       ++   I            R   +   ++ +L   D+
Sbjct: 391 EANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAGDI 450

Query: 462 LVVAGKGHETV---HIVTN 477
           L+  G G        ++ N
Sbjct: 451 LLCQGAGDVGGLAPQLIRN 469


>gi|262370857|ref|ZP_06064181.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
 gi|262314219|gb|EEY95262.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
          Length = 482

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 143/420 (34%), Gaps = 49/420 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  IVVS+A   ++        T   VV    + L       +G      +AV GT G
Sbjct: 80  QGANVIVVSTAIDAENPEIKAAIETRTPVVRRA-EMLGELMRYRHG------IAVAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +          + PT  I                         +  +   
Sbjct: 133 KTTTTSLVTCMLAEE-----NLDPTYVIGGLLNRTG----------------VNAALGAS 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +           ++ +A   TN+  DH+D +             F + LP    A+
Sbjct: 172 RFIVAEADESDASFLHLQPMATIVTNIDADHMDTYGGSFDVLKDTFVQFLQKLPFYGLAV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DDA  +E+M R       +++ G+ +   I    +     +   T+  + ++     
Sbjct: 232 VCGDDANIREIMPRIGRP---LITYGFNEDNDIRAVDIEQEGMQSHFTVLRKDREPLRLT 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYV 360
             LPG   + NAL A G+    G+  A +   LE    V  RF+  G    +    ++  
Sbjct: 289 INLPGLHNILNALAAIGIATDEGVSDAAIARALESFSGVGRRFQVQGEFDIDGGNVKLVD 348

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +E  +K  R +    R++++F                  L   D  ++ +  
Sbjct: 349 DYGHHPKEVEATIKAARASHPDRRLVMMFQPHRFSRTRDCFDDFVDVLSHVDQLLLLEVY 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEM-LNKQDVLVVAGKGH 469
           P  E P  I       +   I     +E I         + A++  L   D+L+  G G+
Sbjct: 409 PAGEKP--IVGADSRSLARSIRLRGDVEPILIDPVEGNLQHALKKVLQADDLLLTQGAGN 466


>gi|241763201|ref|ZP_04761260.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
 gi|241367700|gb|EER61966.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
          Length = 859

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 140/386 (36%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LFA    G+ P  ++AVTGT+GK++ A  +  +    G+    +G T+T   +    ++ 
Sbjct: 460 LFAHGDDGRIP--VVAVTGTNGKTTTARLIAHLFTAQGMR---VGMTNTDGVYVNGRQID 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           +        A + L    V     E +  G+ +  L   +      TN+G  DH+   Y 
Sbjct: 515 SGDCSGPKSARNVLLHPEVDAAVFETARGGILREGLGFDRCQVAVVTNIGAGDHLGLNYI 574

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM------------KRAHNAGCRVL 268
            T +     K  + + + P    A++ A D     +              R H       
Sbjct: 575 TTVEDLAVLKRVIVQNVTP-TGYAVLNATDPIVAAMASACPGKIIYFASDRHHPVMATHR 633

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G++  ++    + A     + TI +  +D          FQV N + +       G+ 
Sbjct: 634 AQGHRTVYVDGDSIVAAEGSWRETIHL--RDVPITRNGKIGFQVENVMASVAAAWGAGLP 691

Query: 329 SALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              +   L             F   + +G  +  DY H  +++  +++ +  + + R  V
Sbjct: 692 WQTIRRGLSGFVNDSDNAPGRFNLMDFKGATVIADYGHNPDAMRALVQAVEALPANRRSV 751

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNR 445
           V    GDR          I  ++ D  I+  D   R     ++ A +  G+ G     + 
Sbjct: 752 VISGAGDRRDEDIREQTVILGEVFDDVILYQDAAQRGRGDGEVMALLREGLAGATRTQHI 811

Query: 446 IE------AIRTAIEMLNKQDVLVVA 465
            E      AI  A++ L   D+ +V 
Sbjct: 812 EEIRGEFIAIDAALDRLKSGDLCLVL 837


>gi|297626714|ref|YP_003688477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922479|emb|CBL57052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 510

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 92/459 (20%), Positives = 156/459 (33%), Gaps = 57/459 (12%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  D+  +  G +FV + G   DG    PQA           +  +       + +  P
Sbjct: 49  QVVIDTHQVTPGALFVGLPGEHVDGADLAPQA---------AGAGAAAALVGHDVTAGLP 99

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            L+V++  + LS  A+ +            A+TG+SGK+S    + Q+ + +G +    G
Sbjct: 100 RLIVEDAGRGLSALATGVVATELARGLITFAITGSSGKTSTKDLLAQVLEATGPTVSPAG 159

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +      S   +     YL S+      + +   G        +     +
Sbjct: 160 N-------HNNEIGVPLSACGVDATTRYLVSE------MGSRGKGDVATLCRIVPPRIST 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +Q A   AK  + E L P +  A++ ADD     +  R +    R  
Sbjct: 207 VLNVGTAHLGEFGSQDAIAEAKGEIVEAL-PADGWAVLNADDPRVAAMAPRTNAHIARWT 265

Query: 269 SVGYQGKFIHLKKVCAIHNKQ--------QVTISVEG--KDFDFLFPLPGEFQVYNALVA 318
           + G          V A H           Q+ ++  G          L G  QV NA  A
Sbjct: 266 TTGAARASDAELFVSADHITTDALQRGSFQLRVTRGGATSTHPVRLRLIGAHQVLNATAA 325

Query: 319 AGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSL-------- 369
           A + +A G+D A V   L       P R E          I   Y    +S+        
Sbjct: 326 ATMALAAGLDPAAVAASLSTATTRSPLRMELHELRGGIALINDSYNANPDSMAAALHAVA 385

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDP 425
            M           R I + G  G+       +  ++A   A    DI I   D+      
Sbjct: 386 AMGAARHDEYPRARTIAILGEMGELGTQSARLHARVARLAADLGIDIVIALGDHA----- 440

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +      G  G   +  R E +  ++E++   D+++V
Sbjct: 441 GTMAQAAREG--GAQARAARKEEVADSLELV-PGDIVLV 476


>gi|296448262|ref|ZP_06890156.1| UDP-N-acetylmuramate/alanine ligase [Methylosinus trichosporium
           OB3b]
 gi|296254214|gb|EFH01347.1| UDP-N-acetylmuramate/alanine ligase [Methylosinus trichosporium
           OB3b]
          Length = 468

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 135/440 (30%), Gaps = 59/440 (13%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G +   GH    Q +   A  +V SSA    +          + VV        L   +
Sbjct: 51  KGARVHVGHD--AQWLGD-AAVVVASSAIKRDNPEIAEARRRRLPVVKRAEMLAELMRDK 107

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AV GT GK++  S V  +    GL    +     I+++  + R      +
Sbjct: 108 RC-------VAVAGTHGKTTTTSLVATLLDAGGLDPTVVNG-GIINAYGTNARPGAGEWM 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +    S                          +       TN+  +H+D+     A   
Sbjct: 160 VVEADESD--------------------GTFLKLPAEIAIVTNVDPEHLDHFGDFDAVKR 199

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHN 287
              R F + LP    A +  D   ++E++    +   RV+S G   +    L  +     
Sbjct: 200 G-FRSFIDNLPFYGFAAVCIDHPTAREIIGEIEDR--RVISYGEDERAEARLVDLDLEGG 256

Query: 288 KQQVTISVEGKDFDFLFPL-------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             +  + +  +D      +        G     NA  A  +   +G+    +   L    
Sbjct: 257 VGRFAVLIRDRDTGVETRIDRLVLPAAGRHNALNATAAIAVAHRLGVSLNDIRSGLAGFA 316

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  RF   G    G  I+ DY H    +  +L+  R  T GR+I +             
Sbjct: 317 GVKRRFTKTGEW-NGVSIFDDYGHHPVEIAAVLRAARASTKGRVIAIMQPHRYTRLQSLF 375

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI------- 453
                    AD+ ++ D  P  E   KI       +    ++    +A   A+       
Sbjct: 376 SEFAGCFADADVTLIADVYPAGE--AKIAGVDGAALARAAQEQGHADA--RALGSSNELP 431

Query: 454 ----EMLNKQDVLVVAGKGH 469
               ++    D +V  G G 
Sbjct: 432 QLIAKIAAPGDYVVFLGAGD 451


>gi|254420158|ref|ZP_05033882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
 gi|196186335|gb|EDX81311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
          Length = 476

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 132/393 (33%), Gaps = 34/393 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +R I  ++ +SR I AG +F+A+ G + DGH            A    +A +    
Sbjct: 23  LHGDDRPITGLTYNSREIVAGDLFLALKGAR-DGHE----------FAANAFAAGAAAAL 71

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141
                     +VV +T   L         + P     AVTG+ GK+SV   ++     +G
Sbjct: 72  VERPVEGGASVVVPDTLHGLEALGVAARERAPHVKRGAVTGSVGKTSVTQAIKAGLDLAG 131

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHRLD 200
            +   I               +  + I +   L+ +          +  ++ G       
Sbjct: 132 PAHASI--------------KSYNNHIGVPLTLARMPVETRRAVFEIGMNAPGEIAPLSR 177

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQA-YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            +   A   T +G  HI+     +A     K  +F+ L+P    A+   D A+S  +   
Sbjct: 178 FVAPHAACVTTVGPVHIEAFADGEAGVAREKAAIFQGLVP-GGTAVANGDVAFSGVLCDA 236

Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A   G R++  G   G    L           V   + G+  D+     G     N+L  
Sbjct: 237 ARAVGARLVVFGTDPGHDARLLDFRPDAEGAAVAAELFGRRIDYRLAQSGAHWGLNSLCV 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
             +  A+ +     L+ L     + GR     V        +  + Y     S+    K+
Sbjct: 297 LLMLDALDVALETGLQALAGFQPLAGRGQTRTVAVPGGAFTLIDESYNANPLSMTAGFKS 356

Query: 376 IRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +     +GR IVV     +       +   +A 
Sbjct: 357 LGARPTAGRRIVVLTDMLELGDQSHALHEGLAQ 389


>gi|309779050|ref|ZP_07673817.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
 gi|308922115|gb|EFP67745.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
          Length = 855

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 154/389 (39%), Gaps = 38/389 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA    G+ P  ++AV+GT+GK++    +  +   SGL    +G T T   + Q  R+ 
Sbjct: 461 MFADGDDGRIP--VVAVSGTNGKTTTVRLITHLLASSGLR---MGMTGTDGVYIQGQRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           T        A + L    V     E +  GL +  L   +      TN+G  DH+   Y 
Sbjct: 516 TGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLNYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--------RAHNA----GCRVL 268
            T +     K  + + + P+   A++ A D     +           AH+       R  
Sbjct: 576 STVEDLAVLKSVIVQNVAPR-GMAVLNAADPMVARMADGCPGSVTFFAHDPSLPTMARHR 634

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +  F+   ++       +  I++   D          FQV NA+ +     A+GID
Sbjct: 635 AQGKRVVFVDGPEIVVAEGANETRIALA--DIPLTRNGTIGFQVENAMSSIAAAWALGID 692

Query: 329 SALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             ++   L          PGRF     + +G  +  DY H  ++++ +   + T+ + R 
Sbjct: 693 WTVIRRGLATFVNDAATAPGRFNLF--DYKGATLIADYGHNPDAIQALCNAVATMPAQRR 750

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG 443
           +VV    GDR         +I   + D  ++ +D   R     ++ A +  G+ G   + 
Sbjct: 751 MVVISGAGDRRDEDIRKQTQILGGVFDDVVLYEDQCQRGRADGEVLALLREGLQGA-SRT 809

Query: 444 NRIE-------AIRTAIEMLNKQDVLVVA 465
           +R+E       AI TA+  L   D+ ++ 
Sbjct: 810 SRVEEIRGEFLAIDTALGRLQPGDLCLIL 838


>gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 788

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 143/433 (33%), Gaps = 52/433 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENI 117
             GA   +  SA  ++      +++ I+ + P  +     K   L  S L          
Sbjct: 44  EAGATLFIGHSASYIKPGTTIVYTSDIKESNPEFIAAQQLKCPMLHRSDLLALLMQNRKT 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAVTGT GK++ +S +  +   +G           I+    + +                
Sbjct: 104 LAVTGTHGKTTTSSLLSWVLHHAGQDPSFA-VGGVIAQLNANAQHGKGD----------- 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +   EA        R        G  TN+  DH++Y+QT++A   A    F + 
Sbjct: 152 ------YFVAEADESDGSFLRY---TPYGGIITNIDLDHMNYYQTEEALVGA-FHQFAKK 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
           +          DD+       R        +S G+      H+ +      K    I+  
Sbjct: 202 VESADHLFWCGDDS-------RLQKLNIEGVSYGFNSDCQLHILQFTQKGWKTSFDITFR 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G  +        G + V N+    GL + +GI+   + + L     V  R    G   + 
Sbjct: 255 GLQYRQIEIAQIGSYNVLNSAAVFGLALQMGIEEHAIRKALSTFPGVGRRCTMRGQK-QE 313

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH  N + + L+ IR  I   R+IV+F               +   + AD+  
Sbjct: 314 ILFIDDYAHHPNEIAVTLRAIRDAIGEKRLIVLFQPHRYSRTKDCLGTYRGIFESADMVY 373

Query: 415 VTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           VTD     E        +K+  E+            R E +    + L   DV+V  G G
Sbjct: 374 VTDIYSAGEQEIPGVTTQKVFDELSQDRSPDFYYSPRKEIVEKVYQTLFPHDVVVTLGAG 433

Query: 469 H------ETVHIV 475
                  E +  +
Sbjct: 434 DIHAAIPELLQKI 446


>gi|194288895|ref|YP_002004802.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193222730|emb|CAQ68733.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 856

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 140/387 (36%), Gaps = 34/387 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA    G+ P  ++AV+GT+GK++    +  I   SGL    +G T T   + Q  R+ 
Sbjct: 461 MFADGDDGRIP--VVAVSGTNGKTTTVRLITHIMATSGLR---MGMTGTDGVYIQGERID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           T        A + L    V     E +  GL +  L   +      TN+G  DH+   Y 
Sbjct: 516 TGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            + +     K  + + + P    A++ A D     V++ A      V    +      + 
Sbjct: 576 NSVEDLAVLKSVIVQNVAPH-GMAVLNAADPM---VVRMADACPGSVTFFAHDPDQPAMA 631

Query: 281 KVCAIHNKQQV-------------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              A   +                 + +   +          FQV NA+ +     A+GI
Sbjct: 632 THRAQGKRVVFVDGAEIVAGEGDAEVRIALAEIPLTRNGTIGFQVENAMSSIAAAWALGI 691

Query: 328 DSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           D +++   L             F   + RG  +  DY H  +++  +   I +I + R +
Sbjct: 692 DWSVIRRGLATFVNDAQTAPGRFNVFDYRGATLIADYGHNPDAILALCNAIESIPAKRRV 751

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGN 444
           VV    GDR         +I   + D  ++  D   R     ++ A +  G+ G      
Sbjct: 752 VVISGAGDRRDDDIRRQTQILGGVFDEVVLYQDQCQRGRADGEVLALLREGLQGAQRASQ 811

Query: 445 RIE------AIRTAIEMLNKQDVLVVA 465
             E      AI TA+  L   D+ ++ 
Sbjct: 812 VEEIRGEFLAIDTALSHLQPGDLCLIL 838


>gi|119478635|ref|ZP_01618538.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
 gi|119448412|gb|EAW29663.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
          Length = 477

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/468 (17%), Positives = 162/468 (34%), Gaps = 67/468 (14%)

Query: 21  FPMQWRERKINEVSSDSRHIQAG--WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           + +   + ++++V+   R +Q     +F+        GH      I+ G + +V S+A  
Sbjct: 44  YQISGSDIQVSKVT---RRLQEKGITVFI--------GHR--ESNIS-GVDVVVCSTAVK 89

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             +          I +V    + L+      +G      +AV GT GK++  S +  +  
Sbjct: 90  DDNPEILEAMAHRIPIVPRA-EMLAELMRYRHG------IAVAGTHGKTTTTSLIASVFA 142

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +     ++ PT  I                L ++   ++    +  S            
Sbjct: 143 EA-----RLDPTFVIGGLLNSAGTNA----QLGESRFLVAEADESDASFLH--------- 184

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              ++ +    TN+  DH+  +             F   LP    A++  DD   +E++ 
Sbjct: 185 ---LQPMVSVVTNIEADHMATYDGDFNKLKKTFVEFLHNLPFYGMAVMCIDDDVVRELLP 241

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNA 315
               A    L+ G+       +  V  +  +   ++   GK    D    +PG+  V NA
Sbjct: 242 AVGRA---TLTYGFSHDADFSIVDVNKLGLRTSFSVKRPGKHKQIDITINMPGDHNVLNA 298

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMI 372
             A  +    GID   +   +EK   V  RF+  G          +  DY H    +E  
Sbjct: 299 TAAIAVATDEGIDDEAIQRGIEKFEGVGRRFQVYGEFDIEEGSVLLVDDYGHHPTEVEAT 358

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------ 425
           +   R      R+++V+                  L   D  ++ +     E+P      
Sbjct: 359 ISAARQAWPDRRLVMVYQPHRYTRTKDLYEDFVRVLSTVDSLLLLEVYSAGEEPIPGADG 418

Query: 426 -EKIRAEIIHGI--PGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
               R+    G+  P F+EK   IE+I   +  ++   DV++  G G+
Sbjct: 419 RSLSRSIRSRGLIDPIFVEK---IESIAEVLKSIVKPGDVVLTQGAGN 463


>gi|88707116|ref|ZP_01104810.1| cyanphycin synthetase [Congregibacter litoralis KT71]
 gi|88698628|gb|EAQ95753.1| cyanphycin synthetase [Congregibacter litoralis KT71]
          Length = 928

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 130/382 (34%), Gaps = 36/382 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I A+TGT+GK++ +  +  I + SGL+   +G TST   +                A
Sbjct: 490 SIPIAAITGTNGKTTTSRMLAHILKMSGLT---VGQTSTDGVYIDGRLTVAGDMTGPTAA 546

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKM 231
              L    V    +E +  G+ +  L   +    +  N+  DH+      T +     K 
Sbjct: 547 QIVLRDPSVNAAVMETARGGILRSGLGYQRSNVSACLNIAADHLGLKGVDTLEDLAEVKR 606

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKKVC 283
            + E        A++ ADD +  ++           +++      +            + 
Sbjct: 607 VVVE---VARDAAVLNADDVHCLQMADHCTAEKLCYVTMNRSHPLVREHIKAGGTALVLE 663

Query: 284 AIHNKQQVTISVEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              N   +T+  E                        V NA+ AA L   + +D   + +
Sbjct: 664 QGINGGMITLYDENGHNIPLLWTHLIPATLEGRALHNVQNAMFAAALAYHMHVDLENIRQ 723

Query: 335 HLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
            L        +        +    ++ +DYAH   +++M+   +      GR IVV    
Sbjct: 724 GLRTFDSTFFQSPGRLNVYDKHPFKVILDYAHNPAAVKMVCDVVDRYEIGGRKIVVLTMP 783

Query: 392 GDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGI-------PGFIEKG 443
           GDR       +  IA    D  I   DDN R  +P ++   +  G+              
Sbjct: 784 GDRRDEDIVEVAGIAAGHFDHYICRRDDNLRGREPGEVPGLLKRGLLEGGVSDDSIQLIE 843

Query: 444 NRIEAIRTAIEMLNKQDVLVVA 465
              +A + A+EM    D++++ 
Sbjct: 844 REEDANQAALEMARGGDLVLIL 865


>gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 821

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 163/476 (34%), Gaps = 45/476 (9%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA-EAIVVS 74
           L       R  +I+ + +DSR +      +F A+   + DGH ++ +   +G    +V  
Sbjct: 12  LGAKRFGNRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRSFVVGE 71

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +Q F      +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ 
Sbjct: 72  LPADMQSFQ-----DANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLY 126

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           Q+               T S  + ++++  P  ++L    + L+           S  G 
Sbjct: 127 QLLS--------PDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEA-----GISEMGE 173

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-S 253
            +     IK   G  TN+G  H +   + Q     K+ LF++        +   D+   S
Sbjct: 174 MEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDC----DVIVYDGDNELIS 229

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V K    +     S     + + ++ +    +   +     G   +F  P   +  + 
Sbjct: 230 SCVAKSLFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIE 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L    + + + +    + E + +L  +  R E     +    I   Y     SL++ L
Sbjct: 290 NSLHCLAVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIAL 349

Query: 374 KNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +         +  ++     +  Q  + +  ++A  +    +        E    +  
Sbjct: 350 DFMSRRSDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGV--------EKIVGVGE 401

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI      F  +    +      E L + D+L     G     I+  G +    D 
Sbjct: 402 EIRTAAARFEIE----KYFFRTTEELLESDLL----AGLRNEVILVKGSRAFHFDR 449


>gi|229818496|ref|ZP_04448777.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
 gi|229784144|gb|EEP20258.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
          Length = 491

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 99/484 (20%), Positives = 181/484 (37%), Gaps = 57/484 (11%)

Query: 5   DLIYKD--FPELIN----QLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGH 57
           +L+ +     E+I      L +  +      I  ++ D+R +  G  +FV   G      
Sbjct: 30  ELLKRHHLLREIITPDRWTLDVADLPGANTPIPTITYDTRKVSQGTMLFV--KG------ 81

Query: 58  LFIPQAIA----QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            F P+ +     +G  A V    +S +  +         ++V++  K +SL ++  YG  
Sbjct: 82  RFKPEFLDGIDTKGLYAYVAEEDHSDRTHAIG-------VIVNDVHKAMSLLSASFYG-L 133

Query: 114 PENILAVTGTSGKSSV---ASFVQQICQ---RSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           P++ L V G +G       A   Q I     +   + F              ++LTTP  
Sbjct: 134 PQHELTVVGITGTKGKTTTAFLAQAILNEYSQGRCALFSSVNLCLDGHTMLPSKLTTPES 193

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225
           +   + +      G+ ++ +E SS     +R+ G+     +F N+  DHI    H T + 
Sbjct: 194 LDSFRMMRQAVDNGMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISPIEHPTLED 253

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHL 279
           Y   K ++           ++ ++  +   + + A      V   G        G     
Sbjct: 254 YLYCKRQIIAN----SRTLVLGSECRHIGLLREDAAVHQVPVSEFGVLDAMPRDGADDQT 309

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
               A    +   + ++G D  +F   L G+F   NAL A  +  A G+ +    E L  
Sbjct: 310 CAWPADGTHRAYRMRLDGNDLGEFSLDLDGDFNYKNALAAIAIAHAAGVPAD--CEALRA 367

Query: 339 LHV--VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL---KNIRTITSGRIIVVFGCGGD 393
           L    VPGR              VDYAH  +S+  +L          + RI +V G  G+
Sbjct: 368 LEHTKVPGRMMQYRDERTSTIAIVDYAHNYDSVVKLLDYVSTRYGERNPRITLVAGSAGN 427

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAI 449
           +   +R  + K A D     + T ++  +E  E I  ++   +           +R +AI
Sbjct: 428 KAIDRREGIVKAAQDRISRFVFTAEDTDTEPYEDICRDMADHVTNSHVTSDTIIDRTQAI 487

Query: 450 RTAI 453
            +A+
Sbjct: 488 ASAL 491


>gi|159045011|ref|YP_001533805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912771|gb|ABV94204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 479

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/464 (18%), Positives = 159/464 (34%), Gaps = 49/464 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  VS D+R +  G +FVA+   + DGH F+ Q           + A  +      +
Sbjct: 21  DWAVTGVSIDTRELAPGDLFVALTAAR-DGHDFVAQ------ALAAGAGAALVSRIPEGV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+V + +  L         +    ++A+TG+ GK+S    ++      G +   
Sbjct: 74  AEDAPLLLVPDVQTALEALGRAGRARTEARVIAITGSVGKTSAKEMMRAALASQGRAHA- 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLI 205
                           +  +   +   L+ + +   V  + +  +  G         +  
Sbjct: 133 -------------AERSFNNHWGVPLTLARMPAGTEVAVIEIGMNHPGEIAPLARMARPH 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A   T +   H++   + +A    K  +FE L P +  A+I  D   +  +   A +AG 
Sbjct: 180 AALITTIAAAHLEALGSLEAIAVEKASIFEGLEP-DGLAVIPGDLPQTPILRAAAEDAGA 238

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           R+ S G   G    L  V A+         + G +       PG   +  AL        
Sbjct: 239 RIESFGTGAGNTHRLSDVQAVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAG 298

Query: 325 IGIDSALVLEHLEKLHVVPGR-------FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +G D A  L  L       GR        + V        I   +     S+   L  + 
Sbjct: 299 VGADPARALMALGAWAPPSGRGTRERLQLDPVIEAMSIELIDDAFNANPTSMGAALDMLA 358

Query: 378 T---------ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPE 426
                     I  GR I + G   +    +  +   +A   A   I  V    PR +   
Sbjct: 359 QAAPAHDIGRIAKGRRIAILGDMLELGPDEAAMHAALAAHPAMAQITLVHCVGPRMQALH 418

Query: 427 KIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAG-KG 468
               E   G   ++E     +A +  A  +++  DV++V G KG
Sbjct: 419 AALPEDKRG--RWVET---AQALVPHAHALVDAGDVVLVKGSKG 457


>gi|325915634|ref|ZP_08177942.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538194|gb|EGD09882.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 477

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 149/429 (34%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDSDHLENYGNDFARVQAAFAEFLQRLPFYGLALL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGR--IYV 360
            LPG   V NAL AA +   +G++   +   LE    +  RF  +G  T S G R  +  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVEPQTIARALENFAGIGRRFNDLGEVTTSTGARVQVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
           P  E P        +   I            +I  +   + ++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQISGLAEVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI+ +G
Sbjct: 463 VAQHIINHG 471


>gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
 gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
          Length = 821

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 163/476 (34%), Gaps = 45/476 (9%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           L       R  +I+ + +DSR +      +F A+   + DGH ++ +   +G    VV  
Sbjct: 12  LGAKRFGNRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVGE 71

Query: 76  -AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               LQ F      +   L + N  K L   A +   +    ++ +TG++GK+ V  ++ 
Sbjct: 72  LPVDLQSFQ-----DANFLQLINPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLY 126

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           Q+               T S  + ++++  P  ++L    + L+           S  G 
Sbjct: 127 QLLS--------PDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEA-----GISEMGE 173

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-S 253
            +     IK   G  TN+G  H +   + Q     K+ LF++        +   D+   S
Sbjct: 174 MEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDC----DVIVYDGDNELIS 229

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V K    +     S     + + ++ +    +   +     G   +F  P   +  + 
Sbjct: 230 SCVAKSLFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIE 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L    + + + +    + E + +L  +  R E     +    I   Y     SL++ L
Sbjct: 290 NSLHCLAVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIAL 349

Query: 374 KNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +         +  ++     +  Q  + +  ++A  +    +        E    +  
Sbjct: 350 DFMSRRSDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGV--------EKIVGVGE 401

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           EI      F  +    +      E L + D+L     G     I+  G +    D 
Sbjct: 402 EIRTAAARFEIE----KYFFRTTEELLESDLL----AGLRNEVILVKGSRAFHFDR 449


>gi|330973386|gb|EGH73452.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 486

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 137/424 (32%), Gaps = 60/424 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG     +        +          ++       + +
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 181 ---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   +E++          L+ G+ +   I    V         T+    ++  D  
Sbjct: 226 MCIDDPVVREILPLVKRP---TLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             +PG   V N+L    +    G+    +++ L     V  RF+    +  +     +  
Sbjct: 283 VNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGHVMLVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +  ++  +R      R+++V+                  L  A++ ++ +  
Sbjct: 343 DYGHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAEANVLLLMEVY 402

Query: 420 PRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVA 465
           P  E+P        +   I   G    I        I   +E+           D+L+  
Sbjct: 403 PAGEEPVPGADSRNLCHSIRQRGQLDPIY-------IERGVELAPLVKPLLRAGDILLCQ 455

Query: 466 GKGH 469
           G G 
Sbjct: 456 GAGD 459


>gi|251798403|ref|YP_003013134.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
 gi|247546029|gb|ACT03048.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
          Length = 462

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 139/417 (33%), Gaps = 45/417 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V S+A S  +          I V+   +    L  +          +AV G  G
Sbjct: 62  KGADLVVYSTALSKDNVERMAAEELNIPVLHRAQMLARLMNAG-------KGVAVAGAHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  + ++         PT  I     +      +             + V   
Sbjct: 115 KTTTSSMIALVMEKC-----DADPTYIIGGEIVNVGTNAKAGKG----------EYVVAE 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+    L  H            TN+  DH++ +        A    F   + +   AI
Sbjct: 160 ADESDGSFLQYH------PSIAIVTNIEPDHLENYDGDFGKLKAAYVKFLSQVKENGKAI 213

Query: 246 IYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDF-DF 302
           + ADD    E++ +   +   ++++ G      +  + +     K    ++  G      
Sbjct: 214 VCADDETITELLPKLDADTASKLITYGIDSDSEYKAENISLGDRKVSFEMTHRGTTLGTL 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   VYNA+     C+  G+    + + + +      RF+ +G       +  DY
Sbjct: 274 ELSVPGRHNVYNAMATVITCLEAGLSFDNIAKAIHEFIGAKRRFQVLG-EVNDILVIDDY 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PR 421
           AH    ++  +   +  T  RII VF                 A   AD  I+TD   P 
Sbjct: 333 AHHPTEIQATISAAKA-TGKRIIAVFQPQRYTRTFFLLEQFSRAFPEADEVIITDIYSPA 391

Query: 422 SEDPEKI-------RAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E  ++I         E+I             + E +      +   D+++  G G 
Sbjct: 392 GE--QQIEGVHSRKLVEMIKTNSNANTSYIPTKEEVLVHLTAKVAPGDLVITMGAGD 446


>gi|114566364|ref|YP_753518.1| UDP-N-acetylmuramate--alanine ligase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|123322290|sp|Q0AYQ7|MURC_SYNWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114337299|gb|ABI68147.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 465

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 151/425 (35%), Gaps = 42/425 (9%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
             GH      + +G + +V SSA    +    +     I +     K   + A       
Sbjct: 55  FKGHS--SSNLKEGVDLLVTSSAVPQDNIELRLAREKKIPI----LKRGQMLAHLANA-- 106

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV G  GK++  S +  +    G     I       S                  
Sbjct: 107 -KKAVAVAGAHGKTTTTSMLYMVLANCGTEPSFIVGGELQGS-----------------E 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+    +G  +  VEA     D   LD ++      TN+  DH+DY+++      A  R 
Sbjct: 149 LNAKLGRG-DYFVVEADES--DASFLD-LRPYIALITNVEDDHLDYYKSVDNIRKA-FRQ 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVT 292
           F E +  E  A++Y  DA+++ ++K       R+L  G       +     +I       
Sbjct: 204 FVEQIRPEGFAMLYGGDAFNRSLVKDL-TLNKRLLFYGEDLSNDYYFLNWESIGLGSHFD 262

Query: 293 ISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +     G    F   +PG+    NAL A    + +G++   +   L+  H    RF+  G
Sbjct: 263 VYKRELGFLGRFELAVPGKHNALNALAAIASALELGLEMEPIKSALKNFHGARRRFQIQG 322

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +    +  DYAH    +   +   R   SGR+IVV+                 AL  A
Sbjct: 323 QKAL-VTVVDDYAHHPTEIRATIDAARNFHSGRVIVVYQPHRYSRTQLLGRQLGEALINA 381

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D+AI+T+     E+       E +           +    R E I   +++  + D+++ 
Sbjct: 382 DLAIITEVYSAGEEAIPGISGEVVCQAAQSIGCHSVYIPQREEIIPYLLQICQENDLIIT 441

Query: 465 AGKGH 469
            G G 
Sbjct: 442 MGAGD 446


>gi|312795062|ref|YP_004027984.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia rhizoxinica HKI
           454]
 gi|312166837|emb|CBW73840.1| UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 487

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 137/418 (32%), Gaps = 49/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+A+V+S+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 88  GADAVVISTAVHADNPEVLEARRRHIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 140

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL      PT  I                  + +S  ++  +    
Sbjct: 141 TTTTSLVASVLAAGGLD-----PTFVIGG----------------RLISAGANARLGTGD 179

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              +           +  +    TN+  DH+D +    A        F   LP    A++
Sbjct: 180 FIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 239

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLF 304
             DD   +E++         ++  G+ Q   +    VCA   +   T+   +    D + 
Sbjct: 240 CVDDPNVREILPFVSKP---IIRYGFAQEADVRATHVCARDGRMHFTVHRADAAPLDIVL 296

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYV 360
            LPG   V NAL A  +   + +  A +   L + + V  RF+  G    T      +  
Sbjct: 297 NLPGTHNVQNALAAIAIATELEVADADIQSALAEFNGVGRRFQRYGEVPLTRGGAYLLID 356

Query: 361 DYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +   I          R+++VF                  L   D  ++T+  
Sbjct: 357 DYGHHPVEMAATIAAARGAFPDRRLVLVFQPHRYTRTRDCFEDFVKVLSTVDALVLTEVY 416

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKG 468
              E P  I A     +   I    R+E +              M+   DV++  G G
Sbjct: 417 AAGEAP--IVAADGRALARAIRVAGRVEPVFVDTLDEIPDALAAMVADGDVVMTMGAG 472


>gi|301384719|ref|ZP_07233137.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato Max13]
          Length = 486

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/424 (15%), Positives = 134/424 (31%), Gaps = 60/424 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG     +        +          ++       + +
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  +             F   LP    A+
Sbjct: 181 ---------------HLQPLVAVVTNIDADHMVTYGGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   ++++          ++ G+     +    V         T+    ++  D  
Sbjct: 226 MCIDDPVVRDILPLVKRP---TMTYGFSEDSDVRAINVRQDGMLTFFTVLRRDREPLDVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             +PG   V N+L    +    G+    +++ L     V  RF+    +        +  
Sbjct: 283 VNMPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGHVMLVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +  ++  +R      R+++V+                  L  A++ ++ +  
Sbjct: 343 DYGHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAEANVLLLMEVY 402

Query: 420 PRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVA 465
           P  E+P        +   I   G    I        I   +E+           D+L+  
Sbjct: 403 PAGEEPVPGADSRNLCHSIRQRGQLDPIY-------IERGVELAPLVKPLLRAGDILLCQ 455

Query: 466 GKGH 469
           G G 
Sbjct: 456 GAGD 459


>gi|113866800|ref|YP_725289.1| cyanophycin synthetase [Ralstonia eutropha H16]
 gi|113525576|emb|CAJ91921.1| cyanophycin synthetase [Ralstonia eutropha H16]
          Length = 856

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 142/386 (36%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +F+    G+ P  ++AV+GT+GK++    +  I   SGL    +G T T   + Q  R+ 
Sbjct: 461 MFSDGDDGRIP--VVAVSGTNGKTTTVRLITHIMATSGLR---MGMTGTDGVYIQGERID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           T        A + L    V     E +  GL +  L   +      TN+G  DH+   Y 
Sbjct: 516 TGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA------------HNAGCRVL 268
            + +     K  + + + P    A++ A D     +                  A     
Sbjct: 576 NSVEDLAVLKSVIVQNVAPH-GMAVLNAADPMVVRMADACPGSVTFFAHDPNQPAMATHR 634

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +  F+    + A     +V I+V   +          FQV NA+ +     A+GID
Sbjct: 635 AQGKRVVFVDGADIVASEGDTEVRIAVA--EVPLTRNGTIGFQVDNAMSSIAAAWALGID 692

Query: 329 SALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              +   L             F   + RG  +  DY H  +++  +   + TI + R +V
Sbjct: 693 WPTIRRGLATFVNDAQTAPGRFNVFDYRGATLIADYGHNPDAILALCNAVETIPAKRRMV 752

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V    GDR         +I   + D  I+  D   R     ++ A +  G+ G    G  
Sbjct: 753 VISGAGDRRDDDIRRQTQILGGVFDEVILYQDQCQRGRADGEVLALLREGLQGAQRAGQV 812

Query: 446 IE------AIRTAIEMLNKQDVLVVA 465
            E      AI TA+  L   D+ +V 
Sbjct: 813 EEIRGEFLAIDTALSHLQPGDLCLVL 838


>gi|300813578|ref|ZP_07093909.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512326|gb|EFK39495.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 462

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 118/372 (31%), Gaps = 36/372 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A++GT GK+S  S V +I +          PT  +     D              L+  
Sbjct: 115 IAISGTHGKTSTTSMVAEIIKNL-----DTDPTIMLGGQLDDINGNIKIGKEKKLFLTEA 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                +  +        N+  DH+DY            + F E 
Sbjct: 170 CEYKAN---------------ILKLFPTTAVILNIDEDHLDYFDNIDHIIRT-FKGFTEK 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTIS 294
           L K    II  DD  +++++        ++++     K  ++ K        +       
Sbjct: 214 LNKNDYCIINIDDENTRKLLPI---DNAKLITFAIDKKADYMAKNIDFDMYGRPYYDLYY 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G   +YN L A G C   GID    ++ +     V  R EF G   +
Sbjct: 271 KDKYIGKVELAILGYHNIYNTLAAIGACHENGIDFEKCIKGIGDYKGVHRRLEFKGL-YK 329

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             R+  DYAH    ++  +  I+     R+  VF                 + D +D+ I
Sbjct: 330 NSRVMDDYAHHPTEIKSSISAIKKSCKKRLFTVFQPHTFTRTKLLLDSFAKSFDQSDVII 389

Query: 415 VTDDNPRSE-DPEKIR-----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +TD     E D   I        I +     I      + I+   E L   D +V  G G
Sbjct: 390 ITDIYAAREKDYGDIHSKTLVDAISNHHKNAIYIKEFSDIIKYLKENLKDDDTVVTMGAG 449

Query: 469 H--ETVHIVTNG 478
           +  E    +   
Sbjct: 450 NVYEIGQELLKN 461


>gi|282883226|ref|ZP_06291825.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus lacrimalis
           315-B]
 gi|281297038|gb|EFA89535.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus lacrimalis
           315-B]
          Length = 462

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 119/372 (31%), Gaps = 36/372 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A++GT GK+S  S V +I +          PT  +     D              L+  
Sbjct: 115 IAISGTHGKTSTTSMVAEIIKNL-----DTDPTIMLGGQLDDINGNIKIGKEKKLFLTEA 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                +  +        N+  DH+DY            + F E 
Sbjct: 170 CEYKAN---------------ILKLFPTTAVILNIDEDHLDYFDNIDHIIRT-FKGFTEK 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTIS 294
           L K+   II  DD  +++++        ++++     K  ++ K        +       
Sbjct: 214 LNKDDYCIINIDDENTRKLLPI---DNAKLITFAIDKKADYMAKNIDFDMYGRPYYDLYY 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G   +YN L A G C   GID    ++ +     V  R EF G   +
Sbjct: 271 KDKYIGKVELAILGYHNIYNTLAAIGACHENGIDFEKCIKGIGDYKGVHRRLEFKGL-YK 329

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             R+  DYAH    ++  +  I+     R+  VF                 + D +D+ I
Sbjct: 330 NSRVMDDYAHHPTEIKSSISAIKKSCKKRLFTVFQPHTFTRTKLLLDSFAKSFDQSDVII 389

Query: 415 VTDDNPRSE-DPEKIR-----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +TD     E D   I        I +     I      + IR   E L   D +V  G G
Sbjct: 390 ITDIYAAREKDYGDIHSKTLVDAISNHHKNAIYIKEFSDIIRYLKENLKDDDTVVTMGAG 449

Query: 469 H--ETVHIVTNG 478
           +  E    +   
Sbjct: 450 NVYEIGQELLKN 461


>gi|295688570|ref|YP_003592263.1| UDP-N-acetylmuramate/alanine ligase [Caulobacter segnis ATCC 21756]
 gi|295430473|gb|ADG09645.1| UDP-N-acetylmuramate/alanine ligase [Caulobacter segnis ATCC 21756]
          Length = 472

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/430 (20%), Positives = 151/430 (35%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA AIV S+A    +       +  + +V    +   + A  +  +   
Sbjct: 63  GHD---AAHVEGASAIVYSTAVKADNPEMVAGRDKRLPLV----RRAEMLAELMRLQFS- 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +    G+    +     I+++  + ++     I       
Sbjct: 115 --IAVGGTHGKTTTTSMVATLLDAGGMDPTVVNG-GIINAYGTNAKVGEGDWI------- 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RL          TN+  +H+D+    +A      + F 
Sbjct: 165 ----------VVEADESDGSFLRLKST---VAIVTNIDAEHLDHWGDFEAVKKG-FQDFI 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P    A +  D    + +  R  N          Q + + +  +    +  +  I V
Sbjct: 211 QNIPFYGFAAVCTDHPEVQALTSRIENRRLVTYGTNPQAE-VRVSNIEMGPDGAKFDIVV 269

Query: 296 EGKDFDFL------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +D + +       P+ G   V NA  A  +   +G+D+  + + L     V  RF   
Sbjct: 270 SPRDGEVVRYDGLKMPMAGHHNVLNATAAVAVARELGVDAESIAKGLAGFGGVKRRFTTT 329

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  + G R+  DY H    +  +LK  R +T G++I V                    + 
Sbjct: 330 GV-ANGIRVVDDYGHHPVEIAAVLKAARAVTQGKVIAVVQPHRYTRLRDLMTEFSSCFND 388

Query: 410 ADIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIE-------AIRTAI-EMLNKQ 459
           AD  IV D     E P     R  ++ G+  F   G+R         A+   I       
Sbjct: 389 ADTVIVADVYTAGEQPIEGVNRDALVEGLKKF---GHRRALPLESPTALPRLIAAEATSG 445

Query: 460 DVLVVAGKGH 469
           D++V+ G G 
Sbjct: 446 DLVVLLGAGD 455


>gi|187926156|ref|YP_001892501.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|241665644|ref|YP_002984003.1| cyanophycin synthetase [Ralstonia pickettii 12D]
 gi|187727910|gb|ACD29074.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|240867671|gb|ACS65331.1| cyanophycin synthetase [Ralstonia pickettii 12D]
          Length = 855

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 158/389 (40%), Gaps = 38/389 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA    G+ P  ++AV+GT+GK++    +  +   SGL    +G T T   + Q  R+ 
Sbjct: 461 MFADGDDGRIP--VVAVSGTNGKTTTVRLITHLLASSGLR---MGMTGTDGVYIQGQRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           T        A + L    V     E +  GL +  L   +      TN+G  DH+   Y 
Sbjct: 516 TGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLNYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--------RAHNAGCRVLSV-- 270
            T +     K  + + + P+   A++ A D     + +         AH+ G   L++  
Sbjct: 576 STVEDLAVLKSVIVQNVAPR-GMAVLNAADPMVARMAEGCPGSVTFFAHDPGLPTLALHR 634

Query: 271 --GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G +  F+   ++ A     +  I++   D          FQV NA+ +     A+GID
Sbjct: 635 AQGKRVVFVDGPEIVAAEGANETRIALA--DIPLTRNGTIGFQVENAMSSIAAAWALGID 692

Query: 329 SALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             ++   L          PGRF     + +G  +  DY H  ++++ +   + T+ + R 
Sbjct: 693 WTVIRRGLATFVNDAATAPGRFNLF--DYKGATLIADYGHNPDAIQALCNAVATMPAQRR 750

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG 443
           +VV    GDR         +I   + D  ++ +D   R     ++ A +  G+ G   + 
Sbjct: 751 MVVISGAGDRRDEDIRKQTQILGGVFDDVVLYEDQCQRGRADGEVLALLREGLQGA-SRT 809

Query: 444 NRIE-------AIRTAIEMLNKQDVLVVA 465
           +R++       AI TA+  L   D+ ++ 
Sbjct: 810 SRVDEIRGEFLAIDTALGRLQPGDLCLIL 838


>gi|325293464|ref|YP_004279328.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
 gi|325061317|gb|ADY65008.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
          Length = 471

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 142/417 (34%), Gaps = 47/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + +V        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKNNPELIAAREKHLPIVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + + +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVATLLE-AGNLDPTVINGGIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE----GKDFDF 302
            D    + ++ R  +   +V++ G      +    V     +    + +     GK F F
Sbjct: 218 LDHPEVQALVGRIEDR--KVITYGENPQADVRFSNVRIDGTRSIFDVEIRRRRTGKIFSF 275

Query: 303 L---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   V NA  A  +   +GI  A + + L     V  RF   G  + G +++
Sbjct: 276 TDLVLPMPGRHNVSNATAAIAVANRLGISEADIKKGLASFAGVKRRFTLTG-EANGVQVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L   R    GRI+ V                    + AD  I+    
Sbjct: 335 DDYGHHPVEIKAVLAAAREACKGRIVAVHQPHRYSRLSSLFDDFAHCFNDADTIILAPVY 394

Query: 420 PRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              EDP      E + + I   G         R +       + N  D +V+ G G+
Sbjct: 395 AAGEDPIEGASSEALVSAIKAAGHRDARFLEKREDLASMVAGIANPGDFVVLLGAGN 451


>gi|149175312|ref|ZP_01853934.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
 gi|148845921|gb|EDL60262.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
          Length = 486

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 158/447 (35%), Gaps = 63/447 (14%)

Query: 48  AIV--GNKED-GHL--FIPQAIAQGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRK 100
           A+   G +   GH   F+P+    G   +V S A  L +       R   P         
Sbjct: 67  ALRAGGYRVHQGHDMRFVPE----GTSVLVYSPAIGLANPERRFAQRMGIPQF------S 116

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           +  +    +  K     + + GT GKS+  +    I Q +G     + P++ I       
Sbjct: 117 YAQMLGHLMRQKQG---VCIAGTHGKSTTTALTAFILQNAG-----VSPSAVIG------ 162

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                     ++ L+  + +G   V+         Q     +     + TN+  DH DY 
Sbjct: 163 ------AELCSQNLNGWAGEGALFVAESCEY----QRSFLNLFPFYAAITNIEPDHFDYF 212

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHL 279
           + Q     A    F   +PK    ++ +     +++ +       ++ +   + G     
Sbjct: 213 KNQDDMTTAYAE-FVARIPKGGTLVLPSTCMGLQKLRE---ACKAKISTFSLERGADWWA 268

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             + +     +  +  +G+ F +      G+  V NA+VAA LC   GID+  + E + +
Sbjct: 269 TDIKSTAFGLRFRLFHQGEYFSEISLQKTGKHNVSNAMVAAILCHTAGIDAEQIREGIYE 328

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQG 397
              +  R+E +G + +G  ++ DYAH   +++  LK +R      RI  ++         
Sbjct: 329 FPGIRRRYERMG-SYKGLTLFDDYAHHPTAIQATLKMLRQEYPDRRIWCLYEPHQVSRTQ 387

Query: 398 KRPIMGKIALDLADIAIVTDDNPRS----EDPEKIRAEIIHGI----PGFIEKGNRIEAI 449
                   +   AD  ++           E+P +   E++  I           +  + +
Sbjct: 388 ALMDYYAGSFQQADRILIAPVYAAREKLAEEPVETSKELVRRILLHNASVSFSSSLDQML 447

Query: 450 RTAIEMLNKQDVLVVAGKG------HE 470
            T        D+++  G G      HE
Sbjct: 448 STLETEAQSGDIIITMGAGEINRIHHE 474


>gi|163786568|ref|ZP_02181016.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
 gi|159878428|gb|EDP72484.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
          Length = 880

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 138/375 (36%), Gaps = 32/375 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A +GT+GK++    +  I +  G   +++G T++   + Q+  L T      A A  
Sbjct: 486 PIIATSGTNGKTTTTRLIAHIAKMKG---YRVGYTTSDGVYIQNRLLMTGDCTGPASAEF 542

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L    V    +E +  GL +  L   K      TN+  DH+      T +     K  +
Sbjct: 543 VLKDPTVNFAVLECARGGLLRAGLGFKKCDVAVVTNVAADHLGLKGIHTIEQLAKVKAVV 602

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHN 287
            E +LP +  AI+ ADD    ++ +   N  C V           +K       + A++ 
Sbjct: 603 PETVLP-DGYAILNADDDLVYDMRR---NVDCNVALFSMDENNPRVKALQRKGGITAVYE 658

Query: 288 KQQVTIS--------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              VTI         +E  +    +    +F + N L A       GI    +   LE  
Sbjct: 659 NGWVTICRGEWKMRIMEAVNIPLTYGGKAKFMIQNVLGAVLAAHVQGISIEDMKAALETF 718

Query: 340 HVVPGRF--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                +              I +DYAH    +  + K    + +   + +    GDR   
Sbjct: 719 IPSASQTPGRLNLFEFNDFSILLDYAHNPAGMRALQKFTDELDATVKVGIIAGIGDRRVE 778

Query: 398 KRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIR 450
               MG IA ++ D  I+  D   R +  E++   +  GI             +  EAI+
Sbjct: 779 DNNEMGSIAAEMFDEIIIRQDKRLRGKTEEELIKMLNDGIKMKDPNKKTTIIPSESEAIK 838

Query: 451 TAIEMLNKQDVLVVA 465
            A++   K  ++++ 
Sbjct: 839 HAVKNAVKGSLIILC 853


>gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21]
 gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21]
          Length = 820

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 143/382 (37%), Gaps = 30/382 (7%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +N ++ DSR I      +F A+ G + DGH ++ +A   G    VV      +  + T  
Sbjct: 28  VNTLAYDSRKITDAKHALFFALPG-RRDGHQYVQEAYRAGVRNFVV----RPEAVNITDY 82

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N   L V +T   L   A+    +    ++A+TG++GK+ V  ++ Q+        + I
Sbjct: 83  LNCNWLFVQDTLHALQQLATYHRKQFAYPVIAITGSNGKTIVKEWLYQLLS----PEYHI 138

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA-SSHGLDQHRLDGIKLIA 206
                       +  +  S + +  +L  +  Q    +     S  G  +     +K   
Sbjct: 139 ----------VRSPKSYNSQLGVPLSLWQMDGQHNLAIIEAGISKVGEMEAIERMVKPTI 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+G  H D   + +     K++LF++       A     +    +           
Sbjct: 189 GILTNIGHAHDDGFASTKEKTIEKLKLFKD-------ADKIVYNPTYVDSAIEVPGRHHF 241

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              +G   +      +    ++  +  +   + +    P   +  + N +    L +AIG
Sbjct: 242 TWRIGKGAQLEVTASLKENGSQYVLEATYLQQSYVLTVPFVDKASIENLVCCWALMLAIG 301

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RII 385
            ++ ++++ +++L  V  R E     +    I   Y++  +SL + L  ++      R +
Sbjct: 302 YEAMVIVDRVKRLLPVSMRLELKKGINNNSIIDDSYSNDLSSLLIALDFLKQQQQHSRKM 361

Query: 386 VVFGCGGDRDQGKRPIMGKIAL 407
           ++        Q +  +  K+A 
Sbjct: 362 LILSDLPTVGQNQTALYTKVAS 383


>gi|149921020|ref|ZP_01909480.1| UDP-N-acetylmuramate--alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149818152|gb|EDM77608.1| UDP-N-acetylmuramate--alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 471

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 144/423 (34%), Gaps = 57/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA    +          I V+    + L        G      L V G+ GK+
Sbjct: 66  ADVVVISSAIKPDNAEVVAARQRKIPVIPRA-EMLGELMRLQQG------LLVAGSHGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +GL    +     ++SF  + RL                  G   + V
Sbjct: 119 TTTSMVAAVLHGAGLDPTVV-IGGKVNSFDSNARL------------------GAGEIFV 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +        +  +       TN+  +H+D++ + +A  +A +  F   +P    A I 
Sbjct: 160 AEADESDGSFLV--LPPTHAIITNIDAEHLDHYGSLEALLDAFVG-FANRVPFYGMAAIC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLF 304
            DD   + V+ R      R +S G   +       ++  +  +    ++  G+D   F  
Sbjct: 217 VDDPNVRAVLPRLTK---RTVSYGIVSEDADYRASEIELVGGRSHFRVTAHGEDRGRFEL 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NAL    LC   G+ + +  + L +   V  RF  V  +  G  +  DY H
Sbjct: 274 AMPGRHNVLNALATIALCDEQGVSTEVTRKALREFQGVQRRFT-VRGDVDGVVVVDDYGH 332

Query: 365 TSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               L   L   R     R +V  F                 +LD AD+ ++T      E
Sbjct: 333 HPTELRATLAAARDAAPTRRLVATFQPHRYTRLRNHYEDFAASLDAADLVVLTPVYAAGE 392

Query: 424 DPEKIRAEIIHGIPGFIEKG--------------NRIEAI----RTAIEMLNKQDVLVVA 465
            P  I      G+   +                  R E +    R   E+    D+++  
Sbjct: 393 QP--IEGYSAEGLGSLLRARKPERPVVLVGPQSLGRAEVVEVTTRRLHELCASGDIVLTL 450

Query: 466 GKG 468
           G G
Sbjct: 451 GAG 453


>gi|22297914|ref|NP_681161.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosynechococcus
           elongatus BP-1]
 gi|34222674|sp|Q8DLV5|MURC_THEEB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|22294092|dbj|BAC07923.1| UDP-N-acetylmuramate-alanine ligase [Thermosynechococcus elongatus
           BP-1]
          Length = 475

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 135/414 (32%), Gaps = 53/414 (12%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ SSA      ++ A      PI    +    L          H    +AV GT GK++
Sbjct: 74  VICSSAIRSDNPEYLAAQHLGCPIFHRSDVLAALM---------HRSQSIAVAGTHGKTT 124

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL         TI    +       + +  ++ L              
Sbjct: 125 TSSMIAYLLLQAGLDP-------TIIVGGEVAAWQGNARVGQSRYL-------------- 163

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L       G  TN+  DH D++ + +         F++   +    I  A
Sbjct: 164 VAEADESDGSLRKFHPHIGVITNIELDHPDHYNSLEEVVAT----FQQFADQAEIVIACA 219

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL-FPL 306
           D    ++   R H+      S+  Q      +  +          +   G     L   +
Sbjct: 220 DCPNIRD---RLHHPRLLTYSLQRQAAVDYCVDHIQYTAEGTTARVWERGTSLGILQLNV 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NAL    +   +GID A +   L +      RFE  G    G R   DYAH  
Sbjct: 277 LGAHNLQNALAVIAVGRYLGIDFATIAAALLEFRGARRRFEERG-QVNGIRFIDDYAHHP 335

Query: 367 NSLEMILKNIR-----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           + +   L+  R          RI+ VF                     AD  I TD    
Sbjct: 336 SEIMATLEAARLQVGTQTPWQRIVAVFQPHRYSRTQTLLKAFGQCFTAADHVIFTDIYSA 395

Query: 422 SE-DPEKIR-AEIIHGIPGFIEKGN---RIEAIRTAIEM-LNKQDVLVVAGKGH 469
            E DP  I  A++      +    +    +EA++T +   L   D+++  G G+
Sbjct: 396 GEPDPGTISGADVATCARQYHASVDYCPTLEAVQTRLAHLLQPGDLVIFLGAGN 449


>gi|73542271|ref|YP_296791.1| cyanophycin synthetase [Ralstonia eutropha JMP134]
 gi|72119684|gb|AAZ61947.1| Cyanophycin synthetase [Ralstonia eutropha JMP134]
          Length = 856

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 141/387 (36%), Gaps = 34/387 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA    G+ P  ++AV+GT+GK++    +  I   SGL    +G T T   + +  R+ 
Sbjct: 461 MFADGDDGRIP--VVAVSGTNGKTTTVRLITHIMATSGLR---MGMTGTDGVYIRGERID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           T        A + L    V     E +  GL +  L   +      TN+G  DH+   + 
Sbjct: 516 TGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSFI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T +     K  + + + P    A++ A D     V++ A      V    +      + 
Sbjct: 576 STVEDLAVLKSVIVQNVAPH-GMAVLNAADPM---VVRMADACPGLVTFFAHDPGQPAMA 631

Query: 281 KVCAIHNKQQV-------------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              A   +                 + +   +          FQV NA+ + G   A+GI
Sbjct: 632 THRAQGKRVVFVDGDHIVASEGDNEMRIPLAEIPLTRNGTIGFQVENAMSSIGAAWALGI 691

Query: 328 DSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           D  ++   L             F   + RG  +  DY H  ++++ +   ++T+ + R +
Sbjct: 692 DWNVIRRGLATFVNDAQTAPGRFNVFDYRGATLIADYGHNPDAIQALCNAVQTMPAKRRL 751

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGN 444
           VV    GDR         +I   + D  I+  D   R     ++ A +  G+ G      
Sbjct: 752 VVISGAGDRRDEDIRKQTQILGGVFDEVILYQDQCQRGRADGEVLALLREGLQGATRTSA 811

Query: 445 RIE------AIRTAIEMLNKQDVLVVA 465
             E      AI T +  L   D+ ++ 
Sbjct: 812 VEEIRGEFVAIDTGLSHLQPGDLCLIL 838


>gi|167043602|gb|ABZ08296.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 147/432 (34%), Gaps = 50/432 (11%)

Query: 51  GNK-EDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G +   GH   ++      GA  +V SSA        T+ +    + V    + L     
Sbjct: 77  GARIFKGHSAEYVG-----GACVVVHSSAVDPSQNPETLYAEEKHVPVIRRSEMLGELMR 131

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             +G      + + GT GK++  +    +   +G     I     +++F  +        
Sbjct: 132 MKFG------IGIAGTHGKTTTTTMAGHVVG-AGAFDPTIIVGGKVAAFGSNAVSGEGDI 184

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I                  +EA  +     RL          TN+  DH+D ++  +   
Sbjct: 185 IL-----------------IEADEYDRTFLRL---TPSLAVITNIDADHLDCYEDLEDIR 224

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAI 285
            A ++ +   +P    AI+  DD   + ++ +      RV++ G   Q +          
Sbjct: 225 AAFIQ-YASSVPFFGAAIVCLDDENVRGIISKIDR---RVVTYGTLRQAQIRAESIQQEG 280

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                  IS E +        PG   V NAL A  + I + +    +   +     V  R
Sbjct: 281 RVMHFDVISSEERLGRVSLDAPGRHNVLNALAAIAIGIELDMKFEDISAGISAFQGVDRR 340

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGK 404
              +G  +RG  +  DYAH    ++  L+        R IV VF                
Sbjct: 341 MHEIG-EARGVLVVDDYAHHPTEIKATLEAASGCWPERRIVAVFQPHLYSRTRDFEDDFA 399

Query: 405 IALDLADIAIVTDDNPRSEDP-EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLN 457
            A   AD+ ++ D     E+P E I  E+I       G P  I    + + +   +E+  
Sbjct: 400 AAFFDADVVVIMDVFGAREEPIEGITGEVIATGAKKSGHPHVIYVPQKEDLVGRMLELSK 459

Query: 458 KQDVLVVAGKGH 469
             DV++  G G 
Sbjct: 460 PGDVIITMGAGD 471


>gi|166710653|ref|ZP_02241860.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 477

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 90/429 (20%), Positives = 145/429 (33%), Gaps = 48/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIRDDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    +++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLSLL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V     + + T+ + EG       
Sbjct: 226 CIDDP---EVAALAGRTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTATPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LE    +  RF  +G          R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVAPGTIARALENFAGIGRRFNDLGEVTTSTGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSTVDALVLSEVY 402

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
           P  E P        +   I            +I  +   + ++L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAQVLPDVLQDGDLLLMMGAGDIGY 462

Query: 473 ---HIVTNG 478
              HI+ NG
Sbjct: 463 VAQHIINNG 471


>gi|254480262|ref|ZP_05093510.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2148]
 gi|214039824|gb|EEB80483.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2148]
          Length = 478

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 135/417 (32%), Gaps = 48/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +          I VV    + L+      +G      +AV GT GK+
Sbjct: 76  ADVVVSSSAVDESNAEVVAAREARIPVVPRA-EMLAELMRYRHG------IAVAGTHGKT 128

Query: 128 SVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +  S +  +   +GL    +  G  +++ S AQ               ++       + +
Sbjct: 129 TTTSLIANVFGEAGLDPTFVIGGLVNSVGSNAQLGASRF--------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +    A        F   LP    A+
Sbjct: 181 ---------------HLQPMVTVVTNIEADHMDTYGGDFAVLRRTFLEFLHNLPFYGVAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFL 303
           +  DD   +E++        +V++ G+       +  +         TI     +     
Sbjct: 226 LCIDDPVIRELLPEVSR---QVVTYGFADDADFRISNMQRDGLTTGFTINRPSNEPLPVT 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYV 360
             +PG   V NA     +    G++   +   L     V  RF  +G  +  G    +  
Sbjct: 283 LNMPGLHNVLNAAATVAVACDEGLEDEAIQSGLAGFAGVGRRFTRMGELNLPGGTALLVD 342

Query: 361 DYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +   L    +     R+++V+                  L   D+ I+ +  
Sbjct: 343 DYGHHPTEVRATLDSARQAWPEQRVVMVYQPHRYSRTRDLYDDFVSVLSRCDVLILLEVY 402

Query: 420 PRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E      D   +   I   G    I   N  +  +    ++ + DV+V  G G+
Sbjct: 403 AAGEEAIPGADSRSLARSIRQRGQLEPIFVENIEDVPQILCSVVEQGDVVVTQGAGN 459


>gi|89055250|ref|YP_510701.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
 gi|109892708|sp|Q28NN6|MURC_JANSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|88864799|gb|ABD55676.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
          Length = 474

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 151/435 (34%), Gaps = 57/435 (13%)

Query: 51  GNKEDGHLFIPQAIAQ--GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFA 106
           G +     F+ Q      GAE +V+SSA      ++ A      PI+        L    
Sbjct: 57  GARV----FVGQQAENLEGAEVVVISSAIKPGNPEYDAARLRGLPIVRRAEMLAELMRLR 112

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           S          +AV GT GK++  + V  +    G+    I     I ++  + R+    
Sbjct: 113 SN---------IAVGGTHGKTTTTTMVATLLDHGGVDPTVING-GIIHAYGSNARVGQGD 162

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +                  VEA       +RL          TN+  +H+++  T +  
Sbjct: 163 WM-----------------VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGTIENL 202

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAI 285
                  F   +P    A+   D    + ++ +  +   RV++ G+     +    +   
Sbjct: 203 RQG-FLDFVSNIPFYGLAVCCTDHPEVQTLVGKITDR--RVVTFGFNAQADVRAVNLHYR 259

Query: 286 HNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  I+++ +D        P+PG+  V NAL A  +   +G+ +  + E L+    V
Sbjct: 260 AGVACFDIALQSEDILIEGCTLPMPGDHNVSNALAAVAVARHLGMKADEIREALDGFKGV 319

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RF  VG    G  +  DY H    +  +LK  R  + GR+I V               
Sbjct: 320 NRRFTKVGEVG-GITVIDDYGHHPVEIAAVLKAARQASDGRVIAVHQPHRYSRLHSLFDD 378

Query: 403 GKIALDLADIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAI-------RTAI 453
                  AD+  + +     EDP     R +++ G+     +  R  AI       R   
Sbjct: 379 FCGCFSEADVVAIAEVYAAGEDPIEGASRDDLVAGMIRHGHRHAR--AILDEDDLERLVR 436

Query: 454 EMLNKQDVLVVAGKG 468
           E     D++V  G G
Sbjct: 437 EQARPGDMVVCLGAG 451


>gi|310830391|ref|YP_003965492.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309249858|gb|ADO59424.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 459

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 154/430 (35%), Gaps = 58/430 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ IA GA+ +V S+A S  +          I     T     + A  L  +   
Sbjct: 55  GHT--PEHIA-GADIVVYSTALSRDNVERVAAEELNIP----TLHRSQMLARLLNER--- 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV G  GK++ +S +  + +R       + PT  I     +      +         
Sbjct: 105 KGIAVAGAHGKTTTSSMIALVMERC-----NVDPTYIIGGEITNLGTNAKAG-------- 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S+ V   + E+    L  H         G  TN+  DH++ +        +    F 
Sbjct: 152 --KSEFVVAEADESDGSFLQYH------PWQGIVTNIEADHLENYDGDFNRLKSAYVQFL 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTIS 294
             +  +  AI+ ADD   +E++ +      RV++ G + +  +    +     +   T++
Sbjct: 204 GQIQPDGAAIVCADDQNIQEMLPQLQT---RVITYGIEHEADYMATDIQLGDRRLSFTMN 260

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G         +PG+  VYNA+     C+  GI    +   + + H    RF+ +G + 
Sbjct: 261 RKGTALGTIELSVPGKHNVYNAMATVISCLEAGIPFEQIAATIVEFHGAKRRFQVIG-DL 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +  DYAH    +   L+  ++ T  RI+ VF                 A   AD  
Sbjct: 320 HDVLVVDDYAHHPTEIIATLQAAKS-TGKRIVAVFQPQRYTRTYFLLDQFSRAFSDADEV 378

Query: 414 IVTDDN-PRSE------DPEKIRAEI-------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           I+ D   P  E      D +K+   I          +P   E  +        ++ +   
Sbjct: 379 IIPDIYSPAGEKRIEGIDSQKLVELIKTNSNKNAKYLPSKDEISS------YLLDAVKPG 432

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 433 DIVITMGAGD 442


>gi|254502723|ref|ZP_05114874.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
 gi|222438794|gb|EEE45473.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
          Length = 469

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 145/420 (34%), Gaps = 53/420 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVSSA    +          I VV        L          +  +AV GT GK+
Sbjct: 65  AEVLVVSSAIKKDNPELVAAREKLIPVVRRAEMLAELMRF-------KQAIAVGGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+     + +    S            
Sbjct: 118 TTTSMVAALLD-AGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESD----------- 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++        A  R F + +P    A++ 
Sbjct: 166 ---------GTFVKLPADVAIVTNIDPEHLDHYGDFSGVQKA-FRQFIDNVPFYGFAVMC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++    +   R+++ G      +    V     K   ++++  +        
Sbjct: 216 LDHPEVQTMIGNIEDR--RIVTYGTNPQADVRFTDVSMDGGKSMFSVTIRDRRSGEETEL 273

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            + + P+PG   V NA  A  +   +G+    + + +     V  RF F G    G +++
Sbjct: 274 SNLVLPMPGLHNVSNATAAIAVASQLGVSPQDIEKGISSFGGVKRRFTFTGEAG-GVQVF 332

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L   R  T G++I V                    + AD  ++T   
Sbjct: 333 DDYGHHPVEIKAVLHAARESTDGKVIAVMQPHRYTRLHSLFDDFSNCFNDADAVVITPVY 392

Query: 420 PRSEDP--EKIRAEIIHGIPGFIEKGNR-IEAI-------RTAIEMLNKQDVLVVAGKGH 469
              E P       +++ G+     +G+R ++AI           E+    D ++  G G+
Sbjct: 393 EAGEQPIEGARHTDLVSGLK---TRGHRQVQAINGPEELASVVKELAGPGDFVICLGAGN 449


>gi|127514380|ref|YP_001095577.1| UDP-N-acetylmuramate--alanine ligase [Shewanella loihica PV-4]
 gi|166224729|sp|A3QIM0|MURC_SHELP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126639675|gb|ABO25318.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella loihica PV-4]
          Length = 484

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 149/428 (34%), Gaps = 50/428 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI  +  Q  GA+ +VVS+A    +          I +V    + L+      +G     
Sbjct: 70  FIGHSADQVEGADVVVVSTAIDASNPEILAAQERRIPIVRRA-EMLAELMRYRHG----- 123

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  +  ++        PT  I                    ++ 
Sbjct: 124 -VAVAGTHGKTTTTSLIASVYGQAERD-----PTFVIGGLLNSAGTNARLGKSRY-LIAE 176

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + +                ++ +    TN+  DH+D ++       +    F  
Sbjct: 177 ADESDASFL---------------HLQPMVSVVTNIEADHMDTYEGDFEKLKSTFVDFLH 221

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            LP    A+   DD   +E++ R      +V++ G+ +   +            + T+  
Sbjct: 222 NLPFYGVAVACIDDPVVREILPRIGR---KVVTYGFSEDADVQALNFEQQGYSSRFTVRR 278

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---T 351
           EG  D D    LPG   V NAL A  +     I+   ++  L++   +  RF+ +G   T
Sbjct: 279 EGMADLDLRVNLPGRHNVLNALAAIAVATEDEIEDEAIIRALDEFQGIGRRFQQLGEFTT 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +    +  DY H  + +   +K  R+     R+++++                  L   
Sbjct: 339 TAGEVMLVDDYGHHPSEVAATIKAARSGWPDKRLVMIYQPHRYSRTRDLYDDFVEVLAQV 398

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
           D  ++ D     E P        +   I       P F+ +  +++ I   +  L   D+
Sbjct: 399 DCLLLLDVYSAGEAPVPGADSRALCRSIRQRGQLDPIFVAEPEQLQTILPGV--LQGGDL 456

Query: 462 LVVAGKGH 469
           L+  G G+
Sbjct: 457 LLTQGAGN 464


>gi|289640756|ref|ZP_06472927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
 gi|289509332|gb|EFD30260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
          Length = 475

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 146/450 (32%), Gaps = 37/450 (8%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            +   +  +  V  DSR + AG +FVA+ G + DGH F              ++      
Sbjct: 18  AVDDHDAAVTGVVIDSRQVAAGALFVAVAGERVDGHDFAA-----------AAAGAGAVA 66

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A      P +VV +    L+  A+++  +    ++AVTG++GK++    +  +    G
Sbjct: 67  VLAARPVGVPAVVVADPVAALAALAAQVRTRSSATVVAVTGSAGKTTTKDLLADLLGELG 126

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +    G  +             P+  +               + + A   G      + 
Sbjct: 127 PTVAAAGSFNNEIGLPLTVTRIEPATRF-------------AVLEMGARGPGHIAALCEL 173

Query: 202 IKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +   G   N+G  H+  +   +     AK  L E         ++ ADD     +  RA
Sbjct: 174 ARPRIGVVLNVGSAHLGQYADGRAGIARAKGELAEA---ASDAVVLNADDPLVAGMAARA 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                     G +              + +  +   G+       L GE QV +AL AA 
Sbjct: 231 RG-EVITFGEGERADVRAHDVRVGDDGRARFDLVAAGERHPVALTLVGEHQVGSALAAAA 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           + I +G+  A   E L +          V     G  +  D Y     S+   LK +  +
Sbjct: 290 VAIRLGLPPARAAEALSRARARSRWRMEVAVTDTGVTVINDAYNANPESMRAALKTLVDL 349

Query: 380 TSGRI-IVVFGC----GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           + GR    V G     G   D     +   +     +  +   +  R             
Sbjct: 350 SRGRRAWAVLGGMEELGASADDEHDALGRLVVRLGVEQLVAIGERARRIHLGASLEGSWS 409

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G   ++   +  +A     E L   DV++V
Sbjct: 410 GESVWV--ADVEQACTLLREQLVPGDVVLV 437


>gi|108801628|ref|YP_641825.1| Mur ligase, middle region [Mycobacterium sp. MCS]
 gi|108772047|gb|ABG10769.1| Mur ligase, middle region [Mycobacterium sp. MCS]
          Length = 851

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 141/398 (35%), Gaps = 40/398 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                   P L V + R  L+  A      +P  I+AVTG++GK+S  + ++ + Q  G+
Sbjct: 49  PLAFPHGVPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGV 108

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAK-ALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                   +T      +    T   I + + A S+LS +G                R + 
Sbjct: 109 PKRPTKNFNTFDGVNGEVANLTNEAIAVIEVAASFLSQRGG--------------PRPNV 154

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T++G  H++Y  + Q     K  +F+  L     A+I  D      +++RA 
Sbjct: 155 LRPEVAMITSIGEAHLEYFGSPQGVAEVKSNVFD--LMSRGTAVIPRDADTYDYMVQRAR 212

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            AG   +S G          +        V   + G+   +     G     N++ A G+
Sbjct: 213 AAGATTVSFGAHPSA-DAHLLSYSAADGVVEAEIFGERITYELGALGRHFARNSVGALGV 271

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVD-YAHTSNSLEM---ILKN 375
             A+G+D       L     V GR     VG+ S    +  D Y    +S+     +L  
Sbjct: 272 VAALGLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSE 331

Query: 376 IRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKI 428
             T   GR I V       G   ++  R +   +     D   +  D  R    + P +I
Sbjct: 332 RATPPRGRRIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPSEI 391

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           R +    + G     +R  A           DV++  G
Sbjct: 392 RGQYYPTVDGLQAALDREFA---------DGDVVLFKG 420


>gi|257791840|ref|YP_003182446.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|317489841|ref|ZP_07948337.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|257475737|gb|ACV56057.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|316911055|gb|EFV32668.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
          Length = 475

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 138/426 (32%), Gaps = 55/426 (12%)

Query: 76  AYSLQDFSATIRSNTPILVV-----DNTRKFLSLFASRLYGKHPENILAV---------- 120
              +    A I    P++VV     DN  +  +  A  L   H   +LA           
Sbjct: 53  EVHIGHDPANIPEGNPVIVVSTAILDNNPELAAAKARGLTIWHRAQMLAYLGRALQTLAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++ +S +  +    G       PT  I    +       S              
Sbjct: 113 AGTHGKTTTSSMLASVLDGMGED-----PTFLIGGIVRAYGTNAHSGTG----------- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              H  VEA         L      A   TN+  DH+D+++        K   F   +P 
Sbjct: 157 --AHYVVEADESDKSFMHLS---PRAVLVTNIEADHLDHYRDLDEI-YEKFASFIGSVPD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
           +   ++   +   + +++ A  +G R+ + G+     + +            T+ +    
Sbjct: 211 DGGVVVACGED--EALVRVARASGKRLFTYGFSDACDVRIASYEPNGVGSDFTLELPDGS 268

Query: 300 F--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                +   PG   V NA    GL  A+G D A   E L     V  RF+ VG    G  
Sbjct: 269 VVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADFAGVKRRFDLVGEAG-GVT 327

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIA 413
           +  DYAH    +   ++    +    + V+F             + K     A D AD  
Sbjct: 328 VVDDYAHHPTEIAATIEAASHLGFAHVHVLFQPHRYSRAPLFTEVLKDDFGRAFDAADAV 387

Query: 414 IVTDDNPRSEDP-----EKIRAEII---HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              D  P  E P      K    ++    G P       RIE +      L + D+L+  
Sbjct: 388 TFMDVYPAGEAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEVVPYLAGKLGEGDLLITM 447

Query: 466 GKGHET 471
           G G  T
Sbjct: 448 GAGDVT 453


>gi|153009075|ref|YP_001370290.1| UDP-N-acetylmuramate--L-alanine ligase [Ochrobactrum anthropi ATCC
           49188]
 gi|166224711|sp|A6WZQ7|MURC_OCHA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151560963|gb|ABS14461.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum anthropi ATCC
           49188]
          Length = 468

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 147/429 (34%), Gaps = 52/429 (12%)

Query: 65  AQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKHP 114
            +G E  V   A ++ D         I+ N P LV    +         + A  +  +H 
Sbjct: 50  EKGIEVFVGHKAENIGDAEVVVVSTAIKKNNPELVAAREKLLPIVRRAEMLAELMRFRH- 108

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +   +G     +     I+++  + R+     + +    
Sbjct: 109 --AVAIGGTHGKTTTTSMVAALLD-AGHLDPTVINGGIINAYGTNARMGDGDWMVVEADE 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S                          +       TN+  +H+D++   +    A  + F
Sbjct: 166 SD--------------------GTFLKLPADIAVVTNIDPEHLDHYGNFENVRAAFAQ-F 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
            E +P     ++  D    + ++ R  +   R+++ G      +               +
Sbjct: 205 VENVPFYGFGVMCLDHPEVQALVSRIEDR--RIVTYGQNPQADVRFVNHRMDGAASLFDV 262

Query: 294 SVEGKDF------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  +        D   P+PG+  V NA  A  +   +GI +  +   L     V  RF 
Sbjct: 263 VIRSRKGEATEIKDLRLPMPGQHNVSNATAAIAVAHELGISADDIRRGLGSFGGVKRRFT 322

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             GT   G  I+ DY H    +  +LK  R  T GR++ +                    
Sbjct: 323 HTGTW-NGVEIFDDYGHHPVEIRAVLKAAREATKGRVVAIVQPHRYTRLASLFDEFAACF 381

Query: 408 DLADIAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRI----EAIRTAIE-MLNKQD 460
           + AD  IVT      EDP E + +E ++  I     +  R     EA+   +  +    D
Sbjct: 382 NDADTVIVTPVYTAGEDPIEGVNSEALVSRIKTAGHRDARYASGPEALAPLVASIAEPGD 441

Query: 461 VLVVAGKGH 469
            +V  G G+
Sbjct: 442 FVVCLGAGN 450


>gi|325067118|ref|ZP_08125791.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces oris K20]
          Length = 483

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/464 (20%), Positives = 159/464 (34%), Gaps = 43/464 (9%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  +   V +DSR    G +FVA+ G + DGH  +  A   GA   +VS   + +   
Sbjct: 22  GPDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSAGVLGAVGAIVSDLEAARSGL 81

Query: 84  ATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVAS 131
           +  ++  P   +++V++T   L   A        +          ++A+TG+ GK++   
Sbjct: 82  SLDQAEEPTMGLVLVEDTVVALGALARTHLEGLRQAAAERGERLTVVAMTGSVGKTTTKD 141

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             +Q+   SG +       +              S  YL              + + AS 
Sbjct: 142 LTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYL-------------VLEMGASG 188

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G   +  D   L A     +G  H+    + +    AK  +   L P +  AI+ ADDA
Sbjct: 189 PGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRP-DGTAILNADDA 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGE 309
            +  + + A          G Q              +    + + G  +       + G 
Sbjct: 248 RAAAMAELAPARVLTFSVRGRQADLRAENVDLDAAARAAFDLHLPGLAEPSRVQLAVAGV 307

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V NAL AAGL +A GI   LV E L  + +       +   S    +  D Y    +S
Sbjct: 308 HNVSNALAAAGLALAAGIAPELVAERLGSVSIESPHRMDISELSGDLLLIDDSYNANIDS 367

Query: 369 LEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   L  +  +   R  VV         +         G++A   A  A++       E 
Sbjct: 368 MTAALAVLPALAGDRRRVVVISEMLELGESSAADHARTGELAAR-AGAAMLIGIGSTQEA 426

Query: 425 PEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAG 466
            E        G  G    G  +   AI     +L   D ++V G
Sbjct: 427 LEA------AGARGVEVVGFDDAATAISQIDALLCDGDAVLVKG 464


>gi|87199156|ref|YP_496413.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|109892716|sp|Q2G994|MURC_NOVAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|87134837|gb|ABD25579.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 474

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/410 (21%), Positives = 147/410 (35%), Gaps = 56/410 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +  A + +  P++        L            ++ +AV GT GK++  S V  +   
Sbjct: 82  PEVVAALENRIPVVRRAEMLAELMRL---------KSTVAVAGTHGKTTTTSMVACLLDA 132

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G+    I     I+S+  + RL     +                  VEA        RL
Sbjct: 133 GGIDPTVING-GIINSYGSNARLGDSDWM-----------------VVEADESDGSFLRL 174

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG        TN+  +H+D++ + +   +A +  F E +P    A++  D    + ++ +
Sbjct: 175 DGT---LAVVTNIDPEHLDHYGSFERVKSAFVE-FIENVPFYGAAMLCIDHPEVQAIIPK 230

Query: 260 AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFL------FPLPGEFQV 312
             +   RV++ G+     +  + V  I    + T  +  +D  F        P+PG   V
Sbjct: 231 VRDR--RVVTYGFSAQADVRGEGVTPIPGGNRFTAVLRQRDGSFRRIEGIELPMPGRHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSL 369
            NAL A  + + +G+   L+     K   V  RF  VG    G     I  DY H    +
Sbjct: 289 QNALAAVAVAVEMGVSDELIRGGFAKFGGVKRRFTKVGEVDIGSGAVTIIDDYGHHPVEI 348

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--EK 427
             +L   R    GR+I V                + A + AD+       P  E P    
Sbjct: 349 RAVLAAAREGVQGRVIAVVQPHRFTRLRDHMDEFQGAFNDADVVYAAPVYPAGEQPIEGV 408

Query: 428 IRAEIIHGIPGFIEKGNRIE-----AIRTAIEML---NKQDVLVVAGKGH 469
             A ++ GI     +G+R       A   A E+       D++V  G G 
Sbjct: 409 DSAAMVEGIKA---RGHRSAHLTTGADELAKELAATVQAGDMVVCLGAGD 455


>gi|329888140|ref|ZP_08266738.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
 gi|328846696|gb|EGF96258.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
          Length = 481

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 152/439 (34%), Gaps = 61/439 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      + +G  A+V S+A    +    +     I +V    +   + A  +  +   
Sbjct: 63  GHD--AAHVTEGVSAVVYSTAVKSTNPELAVARERRIPLV----RRAEMLAELMRLQFS- 115

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + V GT GK++  S V  +   +G     +     I+++  + ++     +       
Sbjct: 116 --IGVGGTHGKTTTTSMVAALLD-AGSLDPTVVNGGIINAYGTNAKVGEGDWM------- 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RL   K      TN+  +H+D++    A   A    F 
Sbjct: 166 ----------VVEADESDGSFLRL---KCTVAIITNIDPEHLDHYGDFDAVKKA-FGDFI 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           E +P     ++  D    +++  +  N   R+++ G   + +     V    +  +  + 
Sbjct: 212 EDIPFYGFGVVCLDHPEVQKLAAQIDNR--RLVTYGLNPQAMVRADNVRMDPDGSRFDVV 269

Query: 295 VEGKDF----------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           ++G+            +   P+ G   V NAL A  +   IG+D   +   L     V  
Sbjct: 270 IQGQGMAALGEPARIENLHLPMAGWHNVSNALAAIAVAREIGVDDDAIRTGLAGFGGVKR 329

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQGKR 399
           RF   G  + G R+  DY H    +  +LK  R +       GR+I V            
Sbjct: 330 RFTTTGV-AHGVRVIDDYGHHPVEIAAVLKAARQVVQNADNTGRVIAVVQPHRYTRLRDL 388

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAI---- 453
                     AD  +V D  P  E P +      ++ G+  +  +   + A+  A     
Sbjct: 389 MEDFSTCFSDADSVLVADVYPAGEQPIEGVDKHALVEGVRRYGHRH--VAALENAAVLPR 446

Query: 454 ---EMLNKQDVLVVAGKGH 469
              +     D++V+ G G 
Sbjct: 447 VIKDEAKPGDLVVLLGAGD 465


>gi|254238926|ref|ZP_04932249.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|126170857|gb|EAZ56368.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
          Length = 480

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 140/428 (32%), Gaps = 49/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 66  GHQ-AENA--DGADVLVVSSAINRANPEVASALERRIPVVPRA-EMLAELMRYRHG---- 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +        +        ++ 
Sbjct: 118 --IAVAGTHGKTTTTSLISSVFAAGGLDPTFVIGGRLNAAGTNAQLGASRYLVAEADESD 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +                          ++ +    TN+  DH+  +             F
Sbjct: 176 ASFLH----------------------LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEF 213

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G  +   +    +     +   T 
Sbjct: 214 LHNLPFYGLAVMCVDDPVVREILPQIARP---TVTYGLSEDADVRAINIRQEGMRTWFTV 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +  E +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G  
Sbjct: 271 LRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 330

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DY H    +  ++K IR      R+++V+                  L 
Sbjct: 331 QVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDLYEDFVQVLG 390

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDV 461
            A++ ++ +  P  E+P       ++   I            R   +   ++ +L   D+
Sbjct: 391 EANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAGDI 450

Query: 462 LVVAGKGH 469
           L+  G G 
Sbjct: 451 LLCQGAGD 458


>gi|291533194|emb|CBL06307.1| UDP-N-acetylmuramate--L-alanine ligase [Megamonas hypermegale
           ART12/1]
          Length = 393

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 139/390 (35%), Gaps = 38/390 (9%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PEN 116
           A+GA       A +++       S+ I  + P LV    +  L LF       +      
Sbjct: 31  AKGATIYKGHDALNVEGKEALVLSSAIHQDNPELVAAKAKG-LKLFHRSDILAYLLNDAK 89

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV G  GK++ +S +  + + +     ++ PT  I  F    +        L K+   
Sbjct: 90  GIAVAGAHGKTTTSSMISVVLEHA-----KVDPTILIGGFVDYLKGNAK----LGKSDYL 140

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++    +  S                       TN+  DH+D++ + +    A ++  + 
Sbjct: 141 VAEADESDGSFLKFY------------PKIAVITNIEDDHMDHYGSMENIIKAFIQFVQN 188

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L  +   A++  D+   + +  +  +      ++ +   ++  K +         T+  +
Sbjct: 189 LDKETGLAVLCFDNENIRNIADKV-DRKYISYALDHDADYM-AKDIKIDGPHTSFTVIYK 246

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   D    +PG+  V NAL    +C  +G+    + E  +       RF+    N   
Sbjct: 247 GEVLGDVALNIPGKHNVLNALATIAVCHHMGLSIEEIAEGFKVFSGTKRRFQTKFRNEN- 305

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I  DYAH    ++  +K  +     R+IV F                     AD+ ++
Sbjct: 306 VWIVDDYAHHPTEIQTTIKAAKQTNPKRLIVAFQPHRYSRTQLLQKEFGSCFVGADVLVL 365

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           TD    SEDP     E I G     E  NR
Sbjct: 366 TDIYAASEDPI----EGISGKTIVDEVKNR 391


>gi|330957969|gb|EGH58229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 486

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 139/419 (33%), Gaps = 50/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G++ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GSDVLVVSSAINTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG     +        +          ++       + +
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRY-------LIAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 181 ---------------HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   +E++          ++ G+ +   +    V         T+    ++  D  
Sbjct: 226 MCVDDPVVREILPLVKRP---TMTYGFSEEADVRAINVRQDGMLTFFTVLRRDREPLDVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             +PG   V N+L    +    G+    +++ L     V  RF+    +        +  
Sbjct: 283 VNMPGNHNVLNSLATIAIATDEGVSDEAIVKGLSGFQGVGRRFQIYGELPVEGGNVMLVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +  ++  +R      R+++V+                  L  A++ ++ +  
Sbjct: 343 DYGHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKGH 469
           P  E+P  I       +   I +  +++   I   +E+           D+L+  G G 
Sbjct: 403 PAGEEP--IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQGAGD 459


>gi|307296816|ref|ZP_07576634.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
 gi|306877729|gb|EFN08955.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
          Length = 925

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 158/420 (37%), Gaps = 50/420 (11%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           + S+    +    V+D      +LF     G+ P  I A+TGT+GKS+ A  V +I  + 
Sbjct: 492 EPSSGPARDVAAPVID------ALFPPGRRGRIP--IFAITGTNGKSTTARMVGRILCQH 543

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           GL+   +G  +T   +   + L          A   L +  V    +E +  G+ +  L 
Sbjct: 544 GLN---VGMATTSGVYFNGHLLKEADASGPRSARMVLRNPAVDAAVLETARGGILREGLG 600

Query: 201 GIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             +   G+  N+  DH+      T +A  + K  + E  + +   +I+ ADD     + +
Sbjct: 601 YDRADVGAVLNVTADHLGLKGIDTVEALADVKSVVVEN-VARRGFSILNADDPMCLRIAR 659

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVC---------------------AIHNKQQVTISVEG 297
            A     R++    +G     + +                       +H   Q T+ +  
Sbjct: 660 HAGG---RIVWFSLEGGARMAETLRRHLAAGGMAVLREADEGGGEIVVHRGGQRTVLMHA 716

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRG 355
            +         EF + NAL A  +C+A G+ +  V + L                  S G
Sbjct: 717 SEIPATLGGIAEFNIANALAAVAMCMAHGVPAETVRDGLRAFTSSFEDSPGRLNMMESHG 776

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            R+ VDYAH    L  + + +  +  G    I +    GDR       MG+IA  + D  
Sbjct: 777 RRVIVDYAHNPAGLIALGQVVDRLRGGHGRAIGMVSIPGDRRDCDIVEMGRIAAGIFDDI 836

Query: 414 IVTD-DNPRSEDPEKIRAEIIHGIPGF---IEKGNRI----EAIRTAIEMLNKQDVLVVA 465
           I  +  + R     +  A +  G       +E+ +RI     A+  A+ M    D+LV+ 
Sbjct: 837 IFREAPDGRGRPRGQTNALLTQGALNAGVPMERVHRIIDEFAAVDAALRMARPGDLLVIL 896


>gi|330501925|ref|YP_004378794.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
 gi|328916211|gb|AEB57042.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
          Length = 480

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 151/431 (35%), Gaps = 55/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    +   Q A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 69  GHR--AENAEQ-ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 120

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG     +           S  +L   +
Sbjct: 121 --IAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLNAAG----TNAQLGSSRFL---I 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  +             F
Sbjct: 172 AEADESDASFL---------------HLQPMVSVVTNIDADHMSTYGGDFNKLKKTFIEF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G+ +   +    V     +   T 
Sbjct: 217 LHNLPFYGLAVLCVDDPVVRELLPQVGRP---TVTYGFSEDADVRAINVRQEGMRTYFTV 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
           +  + +  D    +PG   V NAL    +    GID A ++  L     V  RF+    +
Sbjct: 274 LRPDCEPLDVSVNMPGNHNVLNALATTAIATDEGIDDAAIVSGLSGFQGVGRRFQVYGEL 333

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +     +  DY H    +  ++K +R      R+++V+                  L 
Sbjct: 334 PVDGGSVMLVDDYGHHPREVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVQVLG 393

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIE-MLNK 458
            A++ ++ +  P  E+  P     ++ H I       P ++E   R   +   ++ +L  
Sbjct: 394 EANVLLLVEVYPAGEEPIPGADSRQMCHSIRQRGQLDPIYVE---RGADLAPLLKPLLRA 450

Query: 459 QDVLVVAGKGH 469
            D+L+  G G 
Sbjct: 451 GDILLCQGAGD 461


>gi|149377261|ref|ZP_01895008.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
 gi|149358449|gb|EDM46924.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
          Length = 481

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 133/405 (32%), Gaps = 46/405 (11%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +   +      + +V    + L+      +G      +AV GT GK++  S +  +   
Sbjct: 91  DNPEVSAARGRRVPIVPRA-EMLAEIMRYRHG------IAVAGTHGKTTTTSLIASVLGE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +GL      PT  I                L  A +     G  ++  EA          
Sbjct: 144 AGLD-----PTFVIGGK-------------LNSAGTNAQLGGSRYLVAEADESDAS---F 182

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +  +    TN+  DH+D +             F   LP    A++  DD + +E++ R
Sbjct: 183 LHLTPVISVVTNIEADHMDTYGGDIERLKQTFVDFLHNLPFYGVAVMCVDDGFVQEIIPR 242

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALV 317
              A      +         + + +   + +  +   G   D D    +PG   V NAL 
Sbjct: 243 ISRAII-TYGIDNPDADYRAENIESDGLRTRFVVRRPGGRSDLDVELKMPGRHNVQNALA 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILK 374
           A  +    G+D A +   L     V  RF+  G   T      +  DY H    +E +++
Sbjct: 302 AIAVATDEGVDDAAICRGLAGFAGVGRRFQVYGDYSTRKGTVTLIDDYGHHPTEVEAVIR 361

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAE 431
             R      R+++++                  L   D  ++ D     E   P      
Sbjct: 362 AARDAWPDRRLVMLYQPHRYTRTRDLYEDFVRVLSEVDGLLLMDVYSAGEPAIPGADGRA 421

Query: 432 IIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +   +       P F+E+   IEA+      L   D+L+  G G 
Sbjct: 422 LCRSLRQRGSVEPLFVEENGEIEALLA--NTLQDGDLLITQGAGD 464


>gi|134096475|ref|YP_001101550.1| cyanophycin synthetase [Herminiimonas arsenicoxydans]
 gi|133740378|emb|CAL63429.1| putative Cyanophycin synthetase [Herminiimonas arsenicoxydans]
          Length = 856

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 141/386 (36%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA    G+ P  ++AV GT+GK++    +  I Q    +  ++G T+T   + ++ R+ 
Sbjct: 463 MFAEGDDGRIP--VVAVAGTNGKTTTVRLIAHILQA---NKHRVGMTTTDGVYIENQRID 517

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID--YH 220
           T        A + L    V     E +  G+ +  L   +      TN+G  DH+   + 
Sbjct: 518 TGDCSGPRSARNVLMHPDVDAAVFETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFI 577

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG------ 274
            T +     K  + + + P    A++ A D     +      +       G         
Sbjct: 578 STVEDLAVVKRVIVQNVAP-NGTAVLNAADPMVANMAASCPGSVTFFAKDGNHAVLATHR 636

Query: 275 ----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               + + L     + ++      +   D          FQ+ NA+ A G   ++ +   
Sbjct: 637 AKGHRVVFLDGTSIVASEGAFEHRIALADIAITHNGLIGFQIENAMAAIGAAWSLNLSWD 696

Query: 331 LVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +VL  L          PGRF        G  +  DY H  +++E +   +  + + R +V
Sbjct: 697 IVLNGLRTFENSAATTPGRFNLFT--HHGATVIADYGHNPDAIEALTHAVEAMPAKRRMV 754

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V    GDR         +I  D  D  I+ +D   R     ++ A +  G+       + 
Sbjct: 755 VISGAGDRRDDDLRRQTEILGDAFDDVILYEDQCQRGRADGEVLALLRQGLTKAKRAKSI 814

Query: 446 IE------AIRTAIEMLNKQDVLVVA 465
            E      AI TA+  L   D+ ++ 
Sbjct: 815 KEIHGEFLAIDTALASLQAGDLCLIL 840


>gi|254479325|ref|ZP_05092664.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034745|gb|EEB75480.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 535

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 123/354 (34%), Gaps = 22/354 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            + +TG+ GK+S   F+  +              +T     +  R        +      
Sbjct: 186 TIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKDTHQIF----- 240

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     + A   G  +  +       G  T++G  H++   T +     K  L E 
Sbjct: 241 -------VCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEG 293

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV- 295
           L P++  A++  D+ Y +   ++         +     +   L     I+ +Q +     
Sbjct: 294 L-PEDGIAVLNGDNYYCRTFGEKFAVRKLFYGTESPIERKYFLWAENIINTRQGLKFDAV 352

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G       PL G   V N L A  + +A+G++   +   L ++  VP R + + T  
Sbjct: 353 TEDGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVPHRLQLISTP- 411

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDL 409
            G  +  D +       +  L  ++ + + R I+V        +++  +   +GK   ++
Sbjct: 412 HGVTVIDDAFNSNPEGAKEALACLKEMDAKRRIIVTPGMVELGEKEYEENKNLGKNIAEV 471

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D AI+     RS    +   E            N  EA +    +L   DV++
Sbjct: 472 CDYAILVGKK-RSRPIFEGLKEASFPEEKVFVVANLDEATKVLQNLLQPGDVVL 524


>gi|296133658|ref|YP_003640905.1| UDP-N-acetylmuramate/alanine ligase [Thermincola sp. JR]
 gi|296032236|gb|ADG83004.1| UDP-N-acetylmuramate/alanine ligase [Thermincola potens JR]
          Length = 459

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 138/410 (33%), Gaps = 42/410 (10%)

Query: 69  EAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             +VVSSA S   ++ +   +    IL   +      L A        +  +AV G  GK
Sbjct: 67  RVVVVSSAISPDNEELAEARKKGLKILHRGDVLA--GLMAE-------KKGIAVAGAHGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  + +++GL      PT  +     D      S   L K    ++    +  S
Sbjct: 118 TTTTSMIALVLEKNGLD-----PTVVVGGELFD----IGSNAKLGKGEYLVAEADESDGS 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+  DH+DY+ + +    A  + F E +P E   I+
Sbjct: 169 FL------------KLSPYIEVITNIEDDHLDYYGSTEKIDAA-FQEFTEKIPDEGFCIL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +    K +  +          +G   ++     +C                      +
Sbjct: 216 CFNSPKVKVLADKLKKPFI-SYGIGVPAEYEGRNILCQGTQSSVDVFYRNEYLGKLRLNV 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  + NAL A  +   +G+    V + L     V  RF+ +G   +G  +  DYAH  
Sbjct: 275 PGEHNLANALAALAVGRLVGLSFEQVADALASFTGVGRRFQLIG-QVKGITVVDDYAHHP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
             L+  L+  R     RII VF                 A    DI I+T+     E P 
Sbjct: 334 TELKATLQAARKAGFARIISVFQPHRFTRTKFLYKQFGEAFHGPDIIIITEIYSAGEKPI 393

Query: 426 -----EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKGH 469
                + I  E+       +      E I    +      D+++  G G+
Sbjct: 394 AGVSAQLIIDEVKKHTTAPVYFLKTEEDILEFLLANTRSGDLVLTLGAGN 443


>gi|113869225|ref|YP_727714.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha H16]
 gi|123032665|sp|Q0K6M5|MURC_RALEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113528001|emb|CAJ94346.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
          Length = 477

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 150/434 (34%), Gaps = 55/434 (12%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            GH     A   GA A+VVS+A S  +       +  I VV      L+       G   
Sbjct: 55  HGHD---AANVTGANAVVVSTAVSGDNPEVLAARSKRIPVVPRAVM-LAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +    GL    +     ++S   + RL T         +
Sbjct: 108 ---VAIAGTHGKTTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIV 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + ++               +  +    TN+  DH+D +    A        F
Sbjct: 159 AEADESDASFLN---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + LP    A++  DD   +E++         V+  G+  +   ++ V A     Q+  +
Sbjct: 204 TQRLPFYGIAVLCVDDPNVREILPFVSKP---VVRYGF-AEDAQIRAVDARAVDGQMHFT 259

Query: 295 VEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           V+ +         + +  LPG   V NAL A  +   + +  A +++ L + H V  RF+
Sbjct: 260 VQRQLNGHTEPPLEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQ 319

Query: 348 FVGT-----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPI 401
             G       +    +  DY H    +   L   R    GR +V+ F             
Sbjct: 320 RYGEVATPDGAGTFTLVDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFE 379

Query: 402 MGKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                L   D  ++++     E P          RA  + G    +      E  +  ++
Sbjct: 380 DFVKVLGTVDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILD 439

Query: 455 MLNKQDVLVVAGKG 468
            +   DV+V  G G
Sbjct: 440 AVRPGDVVVTMGAG 453


>gi|15604117|ref|NP_220632.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia prowazekii str.
           Madrid E]
 gi|6225734|sp|Q9ZDS8|MURC_RICPR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3860809|emb|CAA14709.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE (murC) [Rickettsia prowazekii]
 gi|292571843|gb|ADE29758.1| UDP-N-acetylmuramate--alanineligase [Rickettsia prowazekii Rp22]
          Length = 495

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 146/436 (33%), Gaps = 60/436 (13%)

Query: 59  FIPQA---IAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           F+ QA   I      +V+SSA +    +    +    PI+     R+   + A  +  K 
Sbjct: 62  FLGQAKQNIKN-VSYVVISSAINQNNPEIKEALERKIPII-----RRA-EMLAELMRLKC 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G+ GK++  S +  + + +GL        + I+    +N+ T          
Sbjct: 115 S---VAVSGSHGKTTTTSLIACLFEAAGLC------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY+Q  +    A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYQDFEILIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIITYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V   ++   I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKVAEYNK-AVIIDDYAHHPEEIKATLATAKNIANQQNGKVIAIFQPHRYSRIKYLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTA---------I 453
            +    ADI  +T+     E P E I  + +  +    +  +  +A   A         I
Sbjct: 389 MLCFADADILYITNIYAAGETPIEGITGQSL--VDKMTQNKHHDKANFLAELDDVVSIII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIMMGAGN 462


>gi|317124644|ref|YP_004098756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588732|gb|ADU48029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
          Length = 470

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 139/435 (31%), Gaps = 45/435 (10%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR    G ++VA +G   DGH + P             +A ++    +        +VVD
Sbjct: 36  SRDCVPGSLYVARLGEFADGHDYAPA----------AVAAGAVAVLGSRPVEGVATVVVD 85

Query: 97  NTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           + +      A  +  + PE  I+ +TG+SGK+S    +  +   +G +   +   +    
Sbjct: 86  DVQTAFGQVARGVVDRAPELRIVGITGSSGKTSTKDLLAAVLSTAGETVAPVNSLNGEIG 145

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   TP+  +L    + + ++G+ H            +             N+G  
Sbjct: 146 VPLTVCRVTPTTRFLV---AEMGARGIGH----------IDYLTRIAPPDVAIVLNVGTA 192

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+    ++     AK  L   + P    +I+ ADD     +      +  +++    + +
Sbjct: 193 HVGEFGSRANIAAAKSELPRAVRP-GGLSILNADDPLVAAMAG-GLASRVQLVGQSPEAE 250

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                 +     +    +            L G   V N+L  A   + +G+  A V   
Sbjct: 251 VRAEATILDELGRAAYDLVTPRGRARVSLRLSGAHHVGNSLAVAAAALELGLPLAQVAAA 310

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE-MILKNIRTITSGRIIVV----FG 389
           L            +     G  I  D Y    +S+   +       T+G    V      
Sbjct: 311 LSGAVPASRWRMEITERPDGVVIVNDAYNANPDSMRAALDALAAIATTGERWAVLGEMLE 370

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G DR++    I    A    D  +   D  R  D            P ++   +   A 
Sbjct: 371 LGSDREREHAAIGSYAAGLGIDHVVAVGDGARVYD-----------APDWVPDVD--AAH 417

Query: 450 RTAIEMLNKQDVLVV 464
                 L   DV+++
Sbjct: 418 DHLASRLRPGDVVLL 432


>gi|319777842|ref|YP_004134272.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171561|gb|ADV15098.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 907

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 140/393 (35%), Gaps = 37/393 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF     G+ P  I A+TGT+GKS+ A  +  I Q +G     +G TST   +    R+ 
Sbjct: 484 LFRGGKDGRIP--IFAITGTNGKSTTARMLSHILQANG---ATVGLTSTTGVYLNGERIM 538

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T        A   L   GV    +E +  G+ +  L       G+  N+  DH+      
Sbjct: 539 TGDCSGPQSARIVLREPGVDVAVLECARGGILREGLAFDACDIGAVLNVHGDHLGLRGID 598

Query: 224 QAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAGCRV----------LSVGY 272
                A+++       +     I  ADD ++  + + A    C                +
Sbjct: 599 TIDDLAEVKSVVVESVRRGGWSILNADDIHTSAMSREAGGRICYFSLLNRSDWPDFLCSH 658

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGK--------DFDFLFPLPGEFQVYNALVAAGLCIA 324
             +           +   + I  +G+        +    F    EF V N+L A  +   
Sbjct: 659 VAEGGRAVTRERSRDGWDIVIHEDGESMFLMDVDEIPATFEGAAEFNVANSLAAVAMAHC 718

Query: 325 IGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             I +A +   L +               +  G R  VDYAH    L+ + K +  +  G
Sbjct: 719 HDIPAATIRAALAEFTTSFEHSPGRLNVFDGHGFRTIVDYAHNPEGLKALGKLVSHMKRG 778

Query: 383 RI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHGIPG 438
               I +    GDR       MG +A  + D+ +  +D    R   P  I   +  G   
Sbjct: 779 YQRTIGLVAIPGDRRDCDIREMGAVASRIFDVIVFKEDEHELRGRAPGTIAGLLREGALN 838

Query: 439 FIEKGNRIEAI---RTAIE----MLNKQDVLVV 464
                 RI+A+   + A++    +  ++D++V+
Sbjct: 839 AGCAPGRIQAVCPEKEAVDVCLQLAREKDLVVL 871


>gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Chitinophaga pinensis DSM 2588]
 gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588]
          Length = 834

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 145/394 (36%), Gaps = 27/394 (6%)

Query: 23  MQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            Q    +I  +  DSR +      +F+ +V ++ + H +I +   +G    +VS      
Sbjct: 17  QQTGNPEIEHILLDSRKLSFPETSLFIPLVSSRRNAHQYIQELYEKGVSNFIVSEPVPEG 76

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            +         I++V +T + L    +    +    ++ +TG++GK+ V  ++ Q+ ++ 
Sbjct: 77  KYP-----KANIILVKDTMQALHALVAYHRQQFHIPVIGITGSNGKTIVKEWLYQLLEK- 130

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                        S  + ++++  P  ++  K    L+           S  G  +H   
Sbjct: 131 -------DYNIVRSPKSYNSQIGVPLSVWQMKPEHQLAIFEA-----GISQPGEMEHLEK 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---LLPKESPAIIYADDAYSKEVM 257
            I+   G FTN+G  H +     +   N K+ LF +   L+  +    +         ++
Sbjct: 179 IIRPNIGIFTNIGEAHNEGFLNIRQKINEKLVLFSKSDLLIYSKDYLALNECVLNFHNLV 238

Query: 258 --KRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             K  H  G ++ +   +    + +  V    +  ++    +        P   E  V N
Sbjct: 239 GKKDNHEGGLQLFTWSRKTEADLRIISVDKSEHHSRIDALYQTIPIHINIPFVDEGSVEN 298

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+    L + +G++ +++ + +++L  +  R E     +    I   Y     SL + L+
Sbjct: 299 AIHCWALMLHLGMEHSVIQQRMDQLGNIAMRLELKQGINNCSVINDSYNSDLGSLAIALE 358

Query: 375 N-IRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              +        V+        +    +  ++A 
Sbjct: 359 FLQQQQQHPTRTVILSDILQSGKSDASLYEEVAS 392


>gi|226941967|ref|YP_002797041.1| UDP-N-acetylmuramate--L-alanine ligase [Laribacter hongkongensis
           HLHK9]
 gi|254766007|sp|C1D5L5|MURC_LARHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226716894|gb|ACO76032.1| MurC [Laribacter hongkongensis HLHK9]
          Length = 469

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 132/422 (31%), Gaps = 54/422 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V S+A    +          I +V   +  L+       G      +A+ GT GK
Sbjct: 64  GANVVVTSTAVQADNPEVMAARAAGIPIVPRAQM-LAELMRFKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V     R+G   +F IG   T +     +     S  YL    +       + +
Sbjct: 117 TTTTSLVASALGRAGLDPTFVIGGRLTAAG----SNARLGSGDYLV---AEADESDASFL 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH+D +             F + LP    A+
Sbjct: 170 C---------------LSPVMAVVTNIDADHMDTYGHDFERLKQAFIDFLQRLPFYGRAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV----EGKDF 300
           +  DD + +E++           + G      +    +  +  +    +      E +  
Sbjct: 215 LCIDDKHVREILPFVTRPLT---TYGLTPDADVRADNIRPVAGQMLFDVVWQQQGEEQRH 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGG 356
                LPG   V NAL A  + +  G D   +   L +   V  RF+  G          
Sbjct: 272 PVTLNLPGRHNVLNALAAIAIGLECGADIGAIAAGLTEFSGVGRRFQRYGDIALPAGGQA 331

Query: 357 RIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DY H    +   +          R+++ F                  L   D  ++
Sbjct: 332 TVVDDYGHHPVEMAATLAAARGAFPERRLVLAFQPHRYTRTRDLFEDFVGVLSTVDALLL 391

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAG 466
            +  P  E P  I A     +   +    ++E +          T ++ L   DV++  G
Sbjct: 392 AEVYPAGEAP--IVAADGRALARAVRVAGKVEPVFVERIADLPATLLDQLQDGDVVLTMG 449

Query: 467 KG 468
            G
Sbjct: 450 AG 451


>gi|94264635|ref|ZP_01288418.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
 gi|93454930|gb|EAT05171.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
          Length = 463

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 138/414 (33%), Gaps = 42/414 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V SSA    +          + V+        L   ++ G      +AV G+ G
Sbjct: 63  AGADVVVTSSAVGADNPEVVAAQEAGVPVIPRAAMLAELMRLKVNG------IAVAGSHG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S  S    +   +GL    +     ++SF  + +L T                    +
Sbjct: 117 KTSTTSMAGVVLAEAGLDPTVV-IGGQVNSFGSNAKLGTGD-----------------FL 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA        RL     +    TN+  +H+D++   +A   A +  F   +P    AI
Sbjct: 159 VAEADESDGSFVRLS---PVLEIVTNIDHEHVDHYADLEAVKAAFLE-FINRIPFYGAAI 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFD-FL 303
           +  DD     ++        RV++ G      I  +++       +  +    +      
Sbjct: 215 LCLDDDNVTALLPMIRK---RVITYGLSSQADIQAREITTRGFISRFEVWSRQQRLGKVS 271

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   VYNAL A  L   + I  A +   L     V  R + V   S G  +  DY 
Sbjct: 272 LAVPGRHNVYNALAAIALGRELEIPFATIARALNNYSGVQRRLQ-VKGESDGITVIDDYG 330

Query: 364 HTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +   L  +R     R +VV F                 A   AD+ I+ +     
Sbjct: 331 HHPTEIRATLAALRAAWPRRRLVVLFQPHRYSRTAGLFQDFCTAFHDADLLILNNIYAAG 390

Query: 423 ED--PEKIRAEII-----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E   PE     +      HG           +     +  L + DV++  G G+
Sbjct: 391 EAEIPEVAGDALALALRRHGQREVSYVPELADLPTAVLGRLQRGDVVLTLGAGN 444


>gi|254253334|ref|ZP_04946652.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
 gi|124895943|gb|EAY69823.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
          Length = 465

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 143/429 (33%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA A+VVS+A    +       +  + +V      L+       G    
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQRVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
            EG+     +  LPG   V NAL A  +   +G+    + + L + + V  RF+    V 
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVP 321

Query: 351 TNSRG-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           T   G   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 TADGGRYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQ 459
             D  ++T+     E    I       +   +    ++E +  A          ++    
Sbjct: 382 TVDALVLTEVYAAGE--AAIVTANGDALSRALRAAGKVEPVFVATVDEVPGALAQVARNG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|285019573|ref|YP_003377284.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas albilineans GPE
           PC73]
 gi|283474791|emb|CBA17290.1| probable udp-n-acetylmuramate-l-alanine ligase protein [Xanthomonas
           albilineans]
          Length = 478

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 86/420 (20%), Positives = 137/420 (32%), Gaps = 45/420 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    G+      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLTAAVLSEGGMD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLISVITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLAVL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLF 304
             DD    EV   A      V+S G  +   +  + V    ++   T+   EG       
Sbjct: 226 CIDDP---EVAALAAQTPRHVMSYGLSENADVRAEDVVQEGSRMHFTLRMPEGSSTAVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIYV 360
            LPG   V NAL AA +   +G+  A +   L+    +  RF    E V  N    R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVTPAAIASALQSFAGIGRRFNDLGEVVTANGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    L  +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPRELAAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSEVDALVLSEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-------LNKQDVLVVAGKGHETV 472
           P  E P                  +    +   +E+       L   D+L++ G G    
Sbjct: 403 PAGEAPIPGADARALARAIRARGRSEPVVVGQVVELGSVLPDVLQDGDLLLMMGAGDIGY 462


>gi|163786279|ref|ZP_02180727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
 gi|159878139|gb|EDP72195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
          Length = 251

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 39/256 (15%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N VS+D+R +    I+ A+ G   DG+ F+ +A+  GA+  VV       D  A I  N 
Sbjct: 14  NSVSTDTRKLPKECIYFALKGENFDGNKFVAKAVENGAKYCVVD------DEDAMINENC 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGLS 143
             ++V++    L   A+         I+++TG++GK++    +  +           G  
Sbjct: 68  --ILVEDVLTTLQQLATYHRNSIGIPIISLTGSNGKTTTKELINSVLTTTFNVKATLGNL 125

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  IG   T+ SF++D                           + A+     +   +  +
Sbjct: 126 NNHIGVPLTLLSFSEDLDFGIVE--------------------MGANHQKEIEFLCNIAQ 165

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN G+ H++   + +     K  L++ L        I  +D      +    N 
Sbjct: 166 PDYGLITNFGKAHLEGFGSIEGIIKGKSELYDFLRNNNKLVFINTNDEKQINQI----NK 221

Query: 264 GCRVLSVGYQGKFIHL 279
             + ++ G        
Sbjct: 222 YSKTITFGSNIDNNWF 237


>gi|289809142|ref|ZP_06539771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 216

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 23/237 (9%)

Query: 41  QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK 100
             G +FVA+ G + D H F  +A A GA A++VS    +         + P ++V +TR+
Sbjct: 2   TPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------DLPQVIVKDTRQ 52

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
                A+ +  + P  ++A+TG+SGK+SV      I  + G + +      T S+F  D 
Sbjct: 53  AFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY------TASNFNNDI 106

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            +           L          + + A+  G     +   +  A    NL   H++  
Sbjct: 107 GVP-------ITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGF 159

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
            +      AK  ++  L P+   AI+ AD+           +      S        
Sbjct: 160 GSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFSPNAANSDF 215


>gi|51473445|ref|YP_067202.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia typhi str.
           Wilmington]
 gi|59798218|sp|Q68XC2|MURC_RICTY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51459757|gb|AAU03720.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia typhi str.
           Wilmington]
          Length = 498

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 146/436 (33%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA   +  +    +    PI+     R+   + A  +  K 
Sbjct: 64  GH--AKQNIKN-VSYVVISSAIHQNNPEIKEALERKIPII-----RRA-EMLAELMRLKC 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G+ GK++  S +  + + +GL        + I+    +N+ T          
Sbjct: 115 S---VAVSGSHGKTTTTSLIACLFEAAGLY------PTVINGGIINNKSTNAYLGSSNYL 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       T +                I       TN+  +H+DY+Q  +    A  R 
Sbjct: 166 IAEADESDATFI---------------HIPSTIAIITNIDPEHLDYYQDFEILIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIITYGIDAEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
             V   ++   I  DYAH    ++  L   + I    +G++I +F               
Sbjct: 330 TKVAEYNQ-AVIIDDYAHHPEEIKATLATAKNIANQQNGKVIAIFQPHRYSRIKYLFDDF 388

Query: 404 KIALDLADIAIVTDDNPRSEDP-EKIRAEII---------HGIPGFIEKGNRIEAIRTAI 453
            +    ADI  +T+     E P E I  + +         H    F+ + +  + +   I
Sbjct: 389 MLCFADADILYITNIYAAGEKPIEGITGQSLVDKMTQNKYHDKANFLAELD--DVVSVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DHAASGDMIIMMGAGN 462


>gi|167586022|ref|ZP_02378410.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ubonensis Bu]
          Length = 465

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 141/429 (32%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +          + PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAA-----GDLDPTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            EG++    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGREPLPVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVP 321

Query: 354 RGG----RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
             G     +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 AAGGGSYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI---------EMLNKQ 459
             D  ++T+     E    I       +   +    ++E +  A          ++    
Sbjct: 382 TVDALVLTEVYAAGE--AAITTANGDALSRALRAAGKVEPVFVAAIDDVPDALTKVAQNG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|325473282|gb|EGC76477.1| hypothetical protein HMPREF9353_02272 [Treponema denticola F0402]
          Length = 268

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 14/232 (6%)

Query: 278 HLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLE 334
             K +    +  + T+      K++     L G F V N L     +    G+D A ++E
Sbjct: 37  FAKDIEESSSGIKFTLCDFSSRKEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIE 96

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391
            L  +  V GR   +    +   + +DYAHT +S   I  +I+     + G++I +FG G
Sbjct: 97  KLPLVKPVKGRMMLID-EGQDFEVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSG 155

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNR 445
           G+RD  KRP  G+IA   +DI I+ D++PR ED  ++   I  G P            +R
Sbjct: 156 GERDVKKRPEQGRIAALYSDIVILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIPDR 215

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
             AI+ A  +  K D +++ GKGHE   I  +       +    R++L  +L
Sbjct: 216 PSAIKKAFSLAGKNDAVLLLGKGHENSIIFKDRTMPY-DEETTARKLLKTLL 266


>gi|326790202|ref|YP_004308023.1| UDP-N-acetylmuramate/alanine ligase [Clostridium lentocellum DSM
           5427]
 gi|326540966|gb|ADZ82825.1| UDP-N-acetylmuramate/alanine ligase [Clostridium lentocellum DSM
           5427]
          Length = 460

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 134/420 (31%), Gaps = 51/420 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSV 129
           ++    L  ++A I  + P L + + +   ++  S+  G   KH +  + V+GT GK++ 
Sbjct: 67  IADDVDLIVYTAAIHEDNPELQLAHEKHITTITRSKFLGILMKHFDTPICVSGTHGKTTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +      + L          I      N     SP +L +A  Y  S          
Sbjct: 127 TSMLAHGLMAADLDPTI--TVGGILKAIHGNIRIGQSPYFLTEACEYCDSFLDFF----- 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                            G   N+  DH+DY +      ++  + F   +P      I   
Sbjct: 180 --------------PQIGIILNIEEDHMDYFKDINQIRHS-FQKFSSKIPSNGFLAINGK 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPL 306
                E         C+  + G    +    +    ++K   +  V   +         +
Sbjct: 225 VPNLDEFTA---PLSCKTETFGIGSHYNWTAENITFNDKACASFDVYYNETFMTHLDLHV 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + NAL    +   +G++  L+ + LE       RFE  G       I  DYAH  
Sbjct: 282 PGQHNILNALAVCSVYHFLGLELHLLGKGLEAFTGADQRFEIKG-KINDITIVDDYAHHP 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DP 425
             +   L+  +      + VVF                  L  A+  I+TD     E +P
Sbjct: 341 TEIAATLEVAKAYPHNHLYVVFQPHTYTRTKAFLDDFAAVLSSAENVIITDIYAAREKNP 400

Query: 426 EKIRAE-----------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
             I AE               +  F +  N         E     D+++  G G+    I
Sbjct: 401 GDISAEDIIKKINKKGKNALYMKDFEQIAN------YLNEHTVPNDLVITMGAGNVN-QI 453


>gi|308233776|ref|ZP_07664513.1| UDP-N-acetylmuramate--alanine ligase [Atopobium vaginae DSM 15829]
 gi|328943775|ref|ZP_08241240.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae DSM
           15829]
 gi|327491744|gb|EGF23518.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae DSM
           15829]
          Length = 470

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 135/412 (32%), Gaps = 40/412 (9%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS 131
                +   S+ I    P +V            +++  Y  H    +AV GT GK++ +S
Sbjct: 67  EVEPDVVVISSAIPPTNPEVVRARELNIAVWPRAKMLSYLSHHAITVAVAGTHGKTTTSS 126

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V  +    G     +     I    ++ +    +              G   V     S
Sbjct: 127 MVATMLDHVGKDPSFL-----IGGIVEEYKTNGKNG------------NGGYFVCEADES 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G   +    +       TN+  DH+D+++T     +     F +L+      ++  ++ 
Sbjct: 170 DGSFLY----LNPDVVVITNIEADHLDHYKTMDNLEHTFCE-FMDLVGDAGTIVVCGENH 224

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPL-PGE 309
           +  E+  R+ N             ++  + V +   +    + + +G       P  PG+
Sbjct: 225 HCVELA-RSTNRHVVTYGFDETCDYVCKQTVQSHKIRNNFVVCAPDGSCLSISLPANPGK 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NA     +   +G++       L        RF  VG       +  DY H    +
Sbjct: 284 HNVLNATATMAVADVLGVNLQDAAHALSNFKGAHRRFTHVGDIDDICVV-DDYGHHPTEI 342

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP---- 425
           +  L   + +   RI+ VF                 A D AD+ IVT+     E P    
Sbjct: 343 KATLAAAKNLEFNRIVCVFQPHRYSRTQNLQDEFAHAFDDADVLIVTEVFSAGETPIPGV 402

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 EKI+A   H          + + +   + ++   D+++  G G  T
Sbjct: 403 NGMMLAEKIQASTKHC--DVTFVSQKKDVVAHLLSIVRPHDLIITQGAGDVT 452


>gi|20808896|ref|NP_624067.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517554|gb|AAM25671.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 508

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 123/354 (34%), Gaps = 22/354 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            + +TG+ GK+S   F+  +              +T     +  R        +      
Sbjct: 159 TIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKDTHQIF----- 213

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     + A   G  +  +       G  T++G  H++   T +     K  L E 
Sbjct: 214 -------VCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEG 266

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV- 295
           L P++  A++  D+ Y +   ++         +     +   L     I+ +Q +     
Sbjct: 267 L-PEDGIAVLNGDNYYCRTFGEKFAVRKLFYGTESPIERKYFLWAENIINTRQGLKFDAV 325

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G       PL G   V N L A  + +A+G++   +   L ++  VP R + + T  
Sbjct: 326 TEDGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVPHRLQLISTP- 384

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDL 409
            G  +  D +       +  L  ++ + + R I+V        +++  +   +GK   ++
Sbjct: 385 HGVTVIDDAFNSNPEGAKEALACLKEMDAKRRIIVTPGMVELGEKEYEENKNLGKNIAEV 444

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D AI+     RS    +   E            N  EA +    +L   DV++
Sbjct: 445 CDYAILVGKK-RSRPIFEGLKEASFPEEKVFVVANLDEATKVLQTLLQPGDVVL 497


>gi|254491328|ref|ZP_05104508.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxidans
           DMS010]
 gi|224463457|gb|EEF79726.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxydans
           DMS010]
          Length = 473

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 123/406 (30%), Gaps = 45/406 (11%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S  +          I VV    + L+      YG      +AV GT GK++  S +  + 
Sbjct: 82  SEDNVELLAAREQRIPVVPRA-EMLAELMRFSYG------IAVAGTHGKTTTTSLIAALL 134

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                   ++ PT  I                    ++       + +            
Sbjct: 135 SE-----GELDPTFVIGGRLNSAGSNARLGTGRY-LVAEADESDASFLY----------- 177

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++ +    TN+  DH+  ++       A    F   LP    A++  DD   KE++
Sbjct: 178 ----LQPMIAVVTNIDEDHMATYEGDFGKLKATFIEFLHHLPFYGLAVMCLDDPVVKELL 233

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYN 314
                     ++ G      +       H  Q     VE   G+ +     +PG     N
Sbjct: 234 AEVTRPF---ITYGQDEDADYQLVDLTQHQGQSFFTVVEKHSGERYPITLNMPGLHNALN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEM 371
           A  A  +   + ++ A   + L K   +  RF  +G          +  DY H    +  
Sbjct: 291 ATAAMAVARNLAVNIAACQQALLKFDGIGRRFNLLGQVDAEGGKATLIDDYGHHPTEIAA 350

Query: 372 ILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------D 424
            L   R      R++VVF                  L   D+ ++ +  P  E      D
Sbjct: 351 TLAATRGGWPDNRVVVVFQPHRYSRTRDLFEDFAHVLSAVDVLVMLEVYPAGESKIAGAD 410

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              +   I + G    +   N+ E       +L   DVL+  G G 
Sbjct: 411 ARSLCRAIRLRGQVEPVFAENQEELFALLPGLLKDGDVLLTLGAGD 456


>gi|115350518|ref|YP_772357.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
 gi|122324103|sp|Q0BIK0|MURC_BURCM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115280506|gb|ABI86023.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
          Length = 465

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 144/429 (33%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA A+VVS+A    +       +  + +V      L+       G    
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            EG+     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQ 459
             D  ++T+     E    I       +   +    R++ +  A           +    
Sbjct: 382 TVDALVLTEVYAAGE--AAITTANGDALSRALRAVGRVDPVFVASVDDVPDALAGVARNG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|325829942|ref|ZP_08163400.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
 gi|325488109|gb|EGC90546.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
          Length = 475

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 138/426 (32%), Gaps = 55/426 (12%)

Query: 76  AYSLQDFSATIRSNTPILVV-----DNTRKFLSLFASRLYGKHPENILAV---------- 120
              +    A I    P++VV     DN  +  +  A  L   H   +LA           
Sbjct: 53  EVHIGHDPANIPEGNPVIVVSTAILDNNPELAAAKARGLTIWHRAQMLAYLGRALQTLAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++ +S +  +    G       PT  I    +       S              
Sbjct: 113 AGTHGKTTTSSMLASVLDGMGED-----PTFLIGGIVRAYGTNAHSGTG----------- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              H  VEA         L      A   TN+  DH+D+++        K   F   +P 
Sbjct: 157 --AHYVVEADESDKSFMHLS---PRAVLVTNIEADHLDHYRDLDEI-YEKFASFIGSVPD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD 299
           +   ++   +   + +++ A  +G R+ + G+     + +            T+ +    
Sbjct: 211 DGGVVVACGED--EALVRVACASGKRLFTYGFSDACDVRIASYEPNGVGSDFTLELPDGS 268

Query: 300 F--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                +   PG   V NA    GL  A+G D A   E L     V  RF+ VG    G  
Sbjct: 269 VVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADFAGVKRRFDLVGEAG-GVT 327

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIA 413
           +  DYAH    +   ++    +    + V+F             + K     A D AD  
Sbjct: 328 VVDDYAHHPTEIAATIEAASHLGFAHVHVLFQPHRYSRAPLFTEVLKDDFGRAFDAADAV 387

Query: 414 IVTDDNPRSEDP-----EKIRAEII---HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              D  P  E P      K    ++    G P       RIE +      L + D+L+  
Sbjct: 388 TFMDVYPAGEAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEVVPYLAGKLGEGDLLITM 447

Query: 466 GKGHET 471
           G G  T
Sbjct: 448 GAGDVT 453


>gi|317133419|ref|YP_004092733.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
 gi|315471398|gb|ADU28002.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
          Length = 454

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 133/396 (33%), Gaps = 36/396 (9%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138
           ++A +  + P +     +       + L G   +H  +  AV+GT GK++  S + QI  
Sbjct: 74  YTAAVHEDNPEIQAARAKNLPLFSRAELLGLLSRHYADTFAVSGTHGKTTTTSMLTQILM 133

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G       PT+ I       +L          A   +  +               Q  
Sbjct: 134 MAGKD-----PTAVIGG-----KLPFIGGSSRIGATDLMVCEACEF-----------QDS 172

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +        N+  DH++Y ++ +         F     +   A+IY  D      ++
Sbjct: 173 FLTLHPAVSVILNIDNDHLEYFKSMENLIEH----FARFAAQTGNALIYNGDD--ANTLR 226

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              NA    ++ G      +          +     +  E         +PG   + NAL
Sbjct: 227 AVRNASIHKITFGLDHANDYSADNIGVVDRHLTFDLLRGEQTMAHITLKVPGRHNILNAL 286

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A       G+  A++ E L        RFE +G  + G  +  DYAH    L   L+  
Sbjct: 287 AACAAAAYAGVPDAVIEEGLNAFSGAGRRFEVLGRTANGTTVADDYAHHPTELSATLRAA 346

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-AEIIH 434
           + +    +  VF                 AL +AD  +++     R  +   IR  ++  
Sbjct: 347 KDLGYAAVWAVFQPFTFSRTAMLLDDFADALRIADKVVLSPIMGSREVNTYGIRSEDLAA 406

Query: 435 GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
            +PG +   +  +AI   + E     D+++  G G 
Sbjct: 407 KVPGSVCLPD-FDAIAAYVSEHAGPHDLVLTLGCGD 441


>gi|120555362|ref|YP_959713.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
 gi|189028998|sp|A1U3F7|MURC_MARAV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120325211|gb|ABM19526.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
          Length = 481

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 129/400 (32%), Gaps = 45/400 (11%)

Query: 89  NTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + P +V    R+        + A  +  +H    +AV GT GK++  S +  +   +GL 
Sbjct: 91  DNPEVVSARERRVPIVPRAEMLAEIMRYRHG---IAVAGTHGKTTTTSLIASVLGEAGLD 147

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                PT  I                L  A +     G  ++  EA            + 
Sbjct: 148 -----PTFVIGGK-------------LNSAGTNAQLGGSRYLVAEADESDAS---FLHLT 186

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +    TN+  DH+D +             F   LP    A++  DD Y +E++ R   A
Sbjct: 187 PVISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCVDDDYVQEIIPRISRA 246

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGL 321
                 +         + + +   K +  +   G   D      +PG   V NAL    +
Sbjct: 247 II-TYGIDNPDADYRAENITSDGLKTRFLVRRPGGRPDLQVELKMPGRHNVLNALATIAV 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               G+D   +   L     V  RF+  G   T      +  DY H    +E +++  R 
Sbjct: 306 ATDEGVDDQAICRGLAGFAGVGRRFQVYGEYRTPKAAATLVDDYGHHPTEVEAVIRAARE 365

Query: 379 ITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAE 431
               R IV+        + +         L   D  ++ D     E      D   +   
Sbjct: 366 AWPQRRIVMLYQPHRYTRTRDLYEDFVRVLSEVDGLLLMDVYSAGEPAIPGADGRALCRS 425

Query: 432 IIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
           I   G    +   +  E I + +   L   D+L+  G G 
Sbjct: 426 IRQRGKVEPVFVEDNRE-IESLLANVLQDGDLLITQGAGD 464


>gi|304314679|ref|YP_003849826.1| UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588138|gb|ADL58513.1| predicted UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 1002

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 164/451 (36%), Gaps = 79/451 (17%)

Query: 68  AEAIVVSS----AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           A+A+ VS        ++    ++  +   +   +  + L+             ++ V GT
Sbjct: 72  ADAVFVSPSIPSDAPVRGMLESVEKDLIHITTSDIGRVLNQL-------IGIPMVGVAGT 124

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I                 S +   +  +    + +   +  + +  V+
Sbjct: 125 DGKTTTTNMIDHILS---------------SRYRTVSFSSIQDSLVIEGLVELVVNGDVS 169

Query: 184 HVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +  +          R+ DG++++AG  TNL  DH+D  +    Y      + + L+  E 
Sbjct: 170 NRDMAVFELPHGTIRMADGLEIVAGVVTNLTPDHMDEFRDYDEYIERNFSI-KNLIAPEG 228

Query: 243 PAIIYADDAYSKEVM--------------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             ++  DD     ++              +R      R  S   + +             
Sbjct: 229 VLVLCGDDPVIAGLLDDLEVKSVVYGLGNERKVEFMDRTFSGSAEPQVSATDIDLMGLEG 288

Query: 289 QQVTI--------------SVEGKDFD-----------FLFPLPGEFQVYNALVAAGLCI 323
            + T+              S+   + D               +PG F V NAL A  + +
Sbjct: 289 SEFTLKVSEIPTALCSMCGSLNCGEHDGVIHIGPLTERIKLRVPGLFNVENALAAITVAL 348

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G D   +   LE+   + GRFEF+     G  +Y+D AH   S+E + + I     GR
Sbjct: 349 VLGFDIRDIKNALEEFRGIKGRFEFID-QVDGVPVYMDAAHNPESMEKLFEGIE--FKGR 405

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI----RAEIIHGI--P 437
           +I+            +  +G+I  + AD+ IV+  N   E   KI     +E+  G    
Sbjct: 406 LIISLDNPDTLTVRDKYRIGQILGERADVLIVSGKN---ETTGKIDMEAASEVEGGAGRD 462

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I+  +  ++IR A+E+  K D ++  G G
Sbjct: 463 KTIKTESVYDSIRRALEIAEKGDTVLHLGPG 493



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 110/318 (34%), Gaps = 62/318 (19%)

Query: 206  AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-------------- 251
             G  TN+ RDH+   +    Y   K  + +         ++ ADD               
Sbjct: 694  VGVITNISRDHLSGGRRFSDYIECKREIID----TAEVIVLNADDPIVASFAEGLREERA 749

Query: 252  ---------------YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--------K 288
                             +E  K  +N      ++G+ G +  +                 
Sbjct: 750  VLYGIQSMESAPVMPEGRECPKCGNNLKYTRRTMGHLGDYQCVCGYRRPQPEVMALEASA 809

Query: 289  QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                + +  +  +     PG F VYNAL AA    ++G+D   ++  +E    V GRF+ 
Sbjct: 810  DGFKLVIGSEMRNVKLRTPGIFNVYNALAAAAAAWSLGVDMDDIVRGIESFSGVRGRFQK 869

Query: 349  VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +  + R   + +DYAH    +  +++ ++  T GR+IVV     +        +  + L 
Sbjct: 870  LMDSPR---VILDYAHNPAGVRAVMQELKG-TDGRLIVVNTVASESGIDGDLEIASL-LK 924

Query: 409  LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----------KGNRIEAIRTAIEMLNK 458
             AD  I      R      I ++ +  I    +          +    EA+  A+E+   
Sbjct: 925  DADTVIPASYAARR--ASSILSKRVVHIESSRKRAGAGTLGASREQVEEAVSKALEIAEP 982

Query: 459  QDVLVVAGKG----HETV 472
             D +++ G+G     E  
Sbjct: 983  DDTVLIIGEGGFRYAEDY 1000


>gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6]
 gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6]
          Length = 845

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 168/472 (35%), Gaps = 39/472 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L+   +            + S DSR    G  FVA+   + DGH +IP        A
Sbjct: 4   LDDLLAAGARLHGPAHATSFTDWSYDSRLTAPGECFVALRTPRADGHDYIP-------AA 56

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I   +   L  +     + T +L+ D+ +  L  +AS         ++ +TG+ GK++  
Sbjct: 57  IAAGATGILCSWPPADSAGTTVLLCDDPQTTLLRWASARLAAVQPTVVDITGSVGKTT-- 114

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                       +           +    +R +  S + L  A++ L  Q    V    S
Sbjct: 115 ------------ARRAAAAVLARRAATFQSRRSFNSFLGLPIAIARLEDQHRFAVLELGS 162

Query: 191 SHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            H  +  RL           T +   H+    + +A    K  L   L PK   AII  D
Sbjct: 163 DHRGEIARLATFFPPKIALVTAVEAAHLRSFGSLEAIAAEKGDLLAALPPK-GVAIINGD 221

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLP 307
              ++ +M R        ++ G QG+   L  + +    +   + +   G + D   PL 
Sbjct: 222 SPLARALMGRTK---AHTITYG-QGRSCDLSGRGLRYGLDGTLLRLRWCGTEVDVHTPLI 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   +Y AL    + +A G+D    +  L  +  V GR   +        +   ++    
Sbjct: 278 GIPGLYAALAGVAVGLACGMDLVDCVAALPHIVPVAGRLRPLPALGGAALLDDSFSAAPP 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           +    L+ +  + + R I V G   D     ++     +G  A    D+ I+  D     
Sbjct: 338 AALAALETLAALPAHRRIAVVGALSDLPVGSEESFYRELGTRAASSTDLLILKGD--WGV 395

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHI 474
             E+   +I   I   ++  +  EA   A+   L   D+++V G G E    
Sbjct: 396 VTERAARQINPNI--AVQVVDTNEAALAALPPDLGPGDLVLVKG-GAEARME 444


>gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
 gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
          Length = 833

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 164/458 (35%), Gaps = 42/458 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ-AG-WIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +    +   +  IN + +DSR +      +F A+V ++ DG  +I    ++G 
Sbjct: 5   IEEITRIIKAKRIGDNQTIINWLLTDSRSLSFPDETLFFALVTSRGDGSKYIADLYSRGV 64

Query: 69  EAIVVSSAYS-----LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              V+++  +      Q    +  ++   L V+N  K L   A+    +    ++ +TG+
Sbjct: 65  RNFVITNYENQILAKFQSRGISPYADANFLEVENPLKALQKLAAYHRSQFDCPVVGITGS 124

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+ V  ++ QI                 S     +  +  S I +  +L  + S    
Sbjct: 125 NGKTVVKEWLHQILAS--------------SKKIVRSPRSYNSQIGVPLSLWQMHSDADV 170

Query: 184 HVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +     S   +   L+  I+   G  TNLG  H +   + Q     K++LF+       
Sbjct: 171 AIIEAGISQPDEMGALESMIRPTIGVLTNLGGAHQENFFSMQEKCMEKLKLFKHC----D 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             I  AD+      M ++      +  S     + + +  +    N+  ++    G D  
Sbjct: 227 VVIYEADNDLISNCMSKSMLTSREIAWSRYDMERPLFISGIQKDENETTISFRYLGLDNY 286

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  P   E  + N++    +C+ + I +  +   + +L  +  R E     +    I   
Sbjct: 287 YKIPFIDEASIENSIQCLAICLYLMIPADQIRAGMAQLEPIAMRLEVKEGKNNCLIINDS 346

Query: 362 YAHTSNSLEMILKN--IRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           Y    +SL++ L     R++  G         +   G +     R +   I+       I
Sbjct: 347 YNSDLSSLDIALDFHYRRSLQKGLKRTLILSDLLETGQNTSTLYRRVSQLISSKQVQRLI 406

Query: 415 VTDDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIR 450
               N  +E      I  +       F    + IEAI+
Sbjct: 407 GVGKNLMNEFSKFSTIEKDF------FNNTADLIEAIQ 438


>gi|317121120|ref|YP_004101123.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
 gi|315591100|gb|ADU50396.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
          Length = 479

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 98/280 (35%), Gaps = 15/280 (5%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHN 262
                 TN+  +H+D++    A        F   +      +   D    ++++  R   
Sbjct: 183 PEIAVVTNVEPEHLDHYGGDFAQLLQAFARFLRNVRPGGLVVACGDHPVLRQLLADRTPA 242

Query: 263 AGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
            G RV+  G + +   L+   V A     + T+   G+   +    +PG   V NAL A 
Sbjct: 243 PGVRVVRYGMEAEDSDLRARDVQAGPEGTRFTVWQGGRPLGEVRLAVPGLHNVLNALAAV 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + + + +  A     L   H    RF+ +  N  G  +  DYAH    +   L+  R  
Sbjct: 303 AVGLELRVPFAAAAAALASFHGAKRRFQVIY-NRDGILVVDDYAHHPTEIRATLRAARQR 361

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDP------EKIRA 430
               GR+I VF                 A   AD  I+T+   P  E P        +  
Sbjct: 362 QGEGGRVIAVFQPQRYSRTRLLMDEFARAFGDADRVILTEIYAPPGERPIPGVSSAVLAD 421

Query: 431 EIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I       +E   +R E +   +  +   D+++  G G 
Sbjct: 422 RIAREEGRPVELIASREELVEHLLRTVRPGDLVLTMGAGD 461


>gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 14]
          Length = 272

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 22/257 (8%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     ++      ++            + L   L  L++     V    
Sbjct: 118 KEMIASIFAAAVGEHARLATAGNFNN-----------DVGLPLTLLRLNAAHRLAVVELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGC 265
           DDAY+      A     
Sbjct: 226 DDAYAGIWRVAATGNRI 242


>gi|297203112|ref|ZP_06920509.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
 gi|197717453|gb|EDY61487.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
          Length = 463

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 151/430 (35%), Gaps = 41/430 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    + +A  A  +VVSSA    +      +   I VV  +       AS +
Sbjct: 54  GATVHIGH--AAEHLAADATCVVVSSAIRADNPELARAAELGIPVVHRSDA----LASLM 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G  P   +AV GT GK++  S +       GL            S+A    L  P    
Sbjct: 108 DGLRP---IAVAGTHGKTTTTSMLAVSLSELGLRP----------SYAIGGDLDAPGSNA 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L                 + S H                  N+  DH   + +    + +
Sbjct: 155 LHGEGEIFV---AEADESDRSFHKY--------APEVAIVLNVELDHHANYASMDEIYES 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
               F + + K    ++ AD   ++E+  R   +G RV++ G  +   + +  V     K
Sbjct: 204 -FETFVDRIAKGGTLVVNADHEGARELTWRVTASGVRVVTYGDAEDADVRVLSVAPQGLK 262

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +VT+ ++G+   F   +PG    +NA+ A    +A+G+ +  +   L     V  R + 
Sbjct: 263 SEVTVLLDGRQLTFTVSVPGRHYAHNAVAALAAGVALGVPAEDLAPALAAYTGVKRRLQL 322

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIAL 407
            G  + G ++   YAH    +   L+ +R       I VVF         +       AL
Sbjct: 323 KGEAA-GVQVIDSYAHHPTEMTADLEAMRAAAGDARILVVFQPHLFSRTQELGKEMGEAL 381

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            LAD ++V +  P  EDP      E I               ++ +       M    D+
Sbjct: 382 ALADGSLVLEIYPAREDPIPGVTSELIIDAARAAGADVTPVHDKADVPEVVAGMAKAGDL 441

Query: 462 LVVAGKGHET 471
           ++  G G  T
Sbjct: 442 VLTMGAGDVT 451


>gi|54295451|ref|YP_127866.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
 gi|59798133|sp|Q5WTI7|MURC_LEGPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53755283|emb|CAH16777.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
          Length = 469

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 137/418 (32%), Gaps = 49/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+      L+      +G      +A+ GT G
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVIPRA-AMLAELMRFRHG------IAIAGTHG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL    +               +  +   L K+  ++     +  
Sbjct: 126 KTTTTSLVSSLLAEGGLDPSFV---------IGGKLNSCGANAQLGKSAYFVVEADESDA 176

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S               +K +    TN+  DH+D ++            F   LP    A+
Sbjct: 177 SFL------------FLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAV 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFD 301
           +  +D     ++          L+ G++ +  + + +            V      K   
Sbjct: 225 VCLEDEEICRILPAIQRP---TLTYGFKEEAHY-RAINWTQKGMLSEFVVVRPAPHKQLT 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRI 358
             F  PG   V NAL +  +   +G+D   ++  L+K   V  RF+ +G          I
Sbjct: 281 IQFQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAII 340

Query: 359 YVDYAHTSNS-LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H     L  I    R     R++ VF                 AL L+D  ++ D
Sbjct: 341 VDDYGHHPQEILSTIDAFRRVWPERRLVHVFQPHRYTRTQSLHRQFVDALSLSDELLLMD 400

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
                E        E +  EI              ++++  + E +   DV+++ G G
Sbjct: 401 IYAAGETAIPGVTSENLANEIRSRDKRVTIVS--EQSLKATLDEFIKDGDVILMQGAG 456


>gi|269101761|ref|ZP_06154458.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161659|gb|EEZ40155.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 472

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 149/435 (34%), Gaps = 50/435 (11%)

Query: 50  VGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G +   GH      +  GA  +VVS+A S ++          I VV    + L+     
Sbjct: 52  KGAQIFFGH--AASNVE-GASVVVVSTAISQENPELVAARELRIPVVRRA-EMLAELMRY 107

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +G      +A+ GT GK++  + V QI   +GL    +      S+        +    
Sbjct: 108 RHG------IAIAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGCS---- 157

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                ++       + +                ++ +    TN+  DH+D +        
Sbjct: 158 --RYLIAEADESDASFL---------------HLQPMVCVVTNIEADHMDTYGGDFEVLK 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHN 287
                F   LP    A++  DD   +E++ R        L+ G+ +   + L        
Sbjct: 201 QTFIDFLHNLPFYGLAVMCIDDPVVRELLPRVGRPM---LTYGFSEDADVRLMDYQQCGQ 257

Query: 288 KQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   TI  + K +      +PG     NA  A  +    G+D   ++  L +      RF
Sbjct: 258 QGFFTIVRKDKPELKVTLNVPGRHNALNATAAVAVATEEGVDDDAIIRALAEFQGTGRRF 317

Query: 347 EFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIM 402
           + +G    G     +  DY H  + +++ ++  R      R+++VF              
Sbjct: 318 DHLGEFETGNGTAMLVDDYGHHPSEVDVTIQAARAGWPDKRLVMVFQPHRYSRTRDLYDD 377

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIE- 454
               L+  D+ ++ D     E P        +   I   G    I   N  EA+  A+  
Sbjct: 378 FANVLEQVDVLLMLDVYAAGEAPIAGADGRALCRTIRGRGKLDPIFVAN-KEALPAALAN 436

Query: 455 MLNKQDVLVVAGKGH 469
           ++   D+++  G G 
Sbjct: 437 IIQNDDLVLTQGAGD 451


>gi|218961094|ref|YP_001740869.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729751|emb|CAO80663.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 464

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 140/411 (34%), Gaps = 42/411 (10%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V SSA +  +    +      P++     R+   L A           + + GT G
Sbjct: 65  ADVVVKSSAINDDNPEIVSAYEMKIPVI-----RRA-ELLAEITRMSFS---IGIAGTHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    + + +GL    I     + +F  +N + +                   ++
Sbjct: 116 KTTSTSMAGSVLESAGLEPTII-VGGKVKNFGSNNVMGSG-----------------KYI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA  +    H    +       TN+  DH+D ++      ++ +  +   +P     I
Sbjct: 158 VVEADEYD---HSFLTLTPCIAGITNVDADHLDCYRNLDEIKSSFIE-YANKVPFFGSVI 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              DD   + ++   H           Q             N     +  + K       
Sbjct: 214 ACLDDPGVQAILPFIHKKIV-TYGFSRQADVQARDIDMQGFNSSYDLLFKDYKLGRISLK 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+  + N+L+AA + + + I    + + L K   V  RF+  G    G  +Y DYAH 
Sbjct: 273 VTGKHNIQNSLLAASIGLELDIPFPAIQDGLGKFSGVYRRFDLKGEAG-GITVYDDYAHH 331

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +   L+  +     RI+ +F                 +    D  I+    P  E P
Sbjct: 332 PTEIIATLEGFKDSAKRRIVALFQPHLYSRTRDFYEEFGKSFFSCDCLILAPIYPAREQP 391

Query: 426 -----EKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 K+ A+  I  G        +  E +   + +L + D+L+  G G+
Sbjct: 392 IPGISSKLIADAAIQSGHHNVHLINSNSEIVSQTLALLKEGDILITMGAGN 442


>gi|119870782|ref|YP_940734.1| Mur ligase middle domain-containing protein [Mycobacterium sp. KMS]
 gi|119696871|gb|ABL93944.1| Mur ligase, middle domain protein [Mycobacterium sp. KMS]
          Length = 1299

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 141/398 (35%), Gaps = 40/398 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                   P L V + R  L+  A      +P  I+AVTG++GK+S  + ++ + Q  G+
Sbjct: 497 PLAFPHGVPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGV 556

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAK-ALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                   +T      +    T   I + + A S+LS +G                R + 
Sbjct: 557 PKRPTKNFNTFDGVNGEVANLTNEAIAVIEVAASFLSQRGG--------------PRPNV 602

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T++G  H++Y  + Q     K  +F+  L     A+I  D      +++RA 
Sbjct: 603 LRPEVAMITSIGEAHLEYFGSPQGVAEVKSNVFD--LMSRGTAVIPRDADTYDYMVQRAR 660

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            AG   +S G          +        V   + G+   +     G     N++ A G+
Sbjct: 661 AAGATTVSFGAHPSA-DAHLLSYSAADGVVEAEIFGERITYELGALGRHFARNSVGALGV 719

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVD-YAHTSNSLEM---ILKN 375
             A+G+D       L     V GR     VG+ S    +  D Y    +S+     +L  
Sbjct: 720 VAALGLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSE 779

Query: 376 IRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKI 428
             T   GR I V       G   ++  R +   +     D   +  D  R    + P +I
Sbjct: 780 RATPPRGRRIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPSEI 839

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           R +    + G     +R  A           DV++  G
Sbjct: 840 RGQYYPTVDGLQAALDREFA---------DGDVVLFKG 868


>gi|71909109|ref|YP_286696.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
 gi|109892702|sp|Q47AA5|MURC_DECAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71848730|gb|AAZ48226.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
          Length = 463

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 144/429 (33%), Gaps = 50/429 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + IA GA+A+V+S+A    +          I VV   +  L+       G    
Sbjct: 56  GH--AAENIA-GADAVVISTAVKADNPEVIAARERKIPVVPRAQM-LAELMRLKSG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  I    G     I PT  I            +   L     
Sbjct: 108 --IAIAGTHGKTTTTSLVTSILAEGG-----IDPTFVIGG----RLNAAGANARLGSGDF 156

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++    +  S               +  +    TN+  DH++ +        +    F 
Sbjct: 157 LVAEADESDASFL------------FLSPVISVVTNIDADHMETYGHDFERLKSAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT-I 293
             LP    A++  DDA  ++++ R      ++++ G   +   H + + A + + +   +
Sbjct: 205 NRLPFYGVAVVCGDDANIRDILPRVPK---QIITYGLSNECNFHAENIVADNGQMRFDCV 261

Query: 294 SVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            V G           PG   V NAL A  +   + +  A +++ L +   V  RF+  G 
Sbjct: 262 RVNGTTSRLSITLNTPGMHNVLNALAAIAVATEVQVSDAAIVKALAEFKGVGRRFQRYGE 321

Query: 352 ----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
                     +  DY H    +   L   R    GR +V+ F                  
Sbjct: 322 VALPAGGSFTLVDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVKV 381

Query: 407 LDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           L   D   + +     E P          RA  + G    +   +     +T +++    
Sbjct: 382 LSTVDALCLAEIYAAGEAPIVAADGRSLARALRVSGKVEPVFVEDIAAMPQTIMDVARDG 441

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 442 DVVLCMGAG 450


>gi|268610569|ref|ZP_06144296.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus flavefaciens
           FD-1]
          Length = 471

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 140/434 (32%), Gaps = 58/434 (13%)

Query: 59  FIPQAIAQ--GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           FI Q      GA+ IV ++A      +  A   S  P+L   +    L +  S       
Sbjct: 58  FIGQRAENIEGADLIVHTAAIMADNPELIAAKASGVPVLERADL---LGIVTSWY----- 109

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            N + V+GT GK+S  S + QI   +G+          +S++               K+ 
Sbjct: 110 SNAICVSGTHGKTSTTSMITQILYTAGVD---------LSAYIGGKLPCIGGSGIAGKSD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +        S E   H L                N+  DH+DY  T +    +  +  
Sbjct: 161 ILVCE------SCEFEDHFLKFF------PDISVILNIDADHLDYFGTLENIIKSFHKF- 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     II   D  S + ++        +++ G      +  +     N    T  
Sbjct: 208 --NENTSKCIIINGSDENSMKSLEGITGK--EIITFGKDSSCDYYPENVKHENGLLTTYD 263

Query: 295 --VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              +G+        + G   V N+L A      +G +   + + LE+      RFE +G 
Sbjct: 264 AMYKGEKLGTITLHVAGIHNVLNSLAAVAAARYVGAEFDAIQKGLEEFRGAKRRFEKLGF 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +G  +  DYAH    LE  L     +    +  VF                  L + D
Sbjct: 324 E-KGITVVDDYAHHPTELEATLNAAMEMNFNHVWAVFQPFTFSRTKLLLDDFARVLQIPD 382

Query: 412 IAIVTDD-NPRSEDPEKIR-AEIIHGIPGFIEKGNRIEA-----IRTA---------IEM 455
            A++TD    R ++   I    +   IP  +      +A      + A          E 
Sbjct: 383 HAVLTDIMGSREKNTYGIFTRHLAEKIPDCVWFPQDEQAEWTDERKYANFGQICDYICEH 442

Query: 456 LNKQDVLVVAGKGH 469
             + D+++  G G 
Sbjct: 443 AQEGDLVITLGCGD 456


>gi|163732131|ref|ZP_02139577.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
 gi|161394429|gb|EDQ18752.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
          Length = 468

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 137/412 (33%), Gaps = 43/412 (10%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE +V+SSA      +  A   S  PI+        L            ++ +AV GT G
Sbjct: 71  AEVVVISSAIKPGNAELDAARASGLPIVRRAEMLAELMRL---------KSNIAVAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  +   +G     +     I ++  + R      +                 
Sbjct: 122 KTTTTTMVATLLD-AGEFDPTVVNGGIIHAYGSNARKGEGEWM----------------- 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++              F   +P    A+
Sbjct: 164 VVEADESDGTFNRLPAT---IAIVTNIDPEHMEHWGDFDTLRQG-FLDFVSNIPFYGVAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF-DFL 303
              D    + ++ +  +          Q     +    A       V +  EG    D  
Sbjct: 220 CCTDHPEVQALVGKITDRRVITYGFNAQADVRAVNLRYASGVAHFDVALQAEGIVIEDCS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+ + ++   L     V  RF  VG    G  I  DY 
Sbjct: 280 LPMPGDHNVSNALSAIAVARHLGMKAEVIKTALAAFGGVNRRFTRVG-EIDGVTIIDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +  +LK  R  T GR+I V                    + AD+  + +     E
Sbjct: 339 HHPVEIAAVLKAARQATEGRVIAVHQPHRYSRLSSLFDDFCACFNDADVVGIAEVYAAGE 398

Query: 424 D--PEKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
           D  P   R +++ G+     +  R     + +   + E     D++V  G G
Sbjct: 399 DPIPGAGRDDLVAGLIRHGHRHARAVVGEDDLERLVREQTRPGDMVVCLGAG 450


>gi|282897750|ref|ZP_06305749.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
 gi|281197429|gb|EFA72326.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
          Length = 489

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 134/410 (32%), Gaps = 50/410 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +  +    A +    PIL   +    L   A           +AV GT GK++
Sbjct: 99  VVCSTAINNNNLEYKAALELGCPILHRSDVLAAL--IADYHS-------IAVAGTHGKTT 149

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL                D  +     +   +  + L          +
Sbjct: 150 TSSMIGYMLLQAGL----------------DPTIVVGGEVNAWEGNARLGESKYLVAEAD 193

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++ T +         F+         +   
Sbjct: 194 ESDGSLVKH-----TPAIGIITNIELDHPDHYATLEQVVET----FQTFARGCQVVVGSI 244

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLP 307
           D    ++ +K   +          QG    +  +    +     +  +GK    L   L 
Sbjct: 245 DCDIVRDRLKPGISYSLDP----DQGADYTVTNIDYRADGTTALVWEKGKSLGVLSLQLL 300

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  +   + ++   + + L        RFEF G    G     DYAH  +
Sbjct: 301 GRHNLSNALAAVAVGRVLNLEFGEIAKGLATFEGARRRFEFRG-EVDGITFIDDYAHHPS 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP 425
            +   L   R        VV      R    R    + A     AD+ ++TD     E  
Sbjct: 360 EIRATLAAARLQAKAGQRVVGIFQPHRYSRVRTFFDEFANCFTHADLVVLTDIYSAGEPS 419

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 EK+ AEI    P  I + +     R  +  L   D+ V  G G+
Sbjct: 420 CEQITGEKLAAEIAKQHPQVIYQPSLALIPRVLLSTLRPGDLAVFLGAGN 469


>gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
 gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
          Length = 843

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 146/418 (34%), Gaps = 38/418 (9%)

Query: 7   IYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQA 63
           I      ++  L  I      ER I  + +DSR + +    +F A+     DGH +IPQ 
Sbjct: 8   IMSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQL 67

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G  A  +               +  I+ V  T + L   AS    ++   ++ +TG+
Sbjct: 68  YEHGVRAFFICEPIE---PYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGS 124

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+ V  F+  +           G    + S       +  S + +  ++  +  +   
Sbjct: 125 NGKTVVKEFLYHLLS---------GCYRIVRS-----PKSYNSQLGVPLSILNMEEEHTL 170

Query: 184 HVSVEASSHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +     S  ++  RL   I+   G  TN+G  H +   +       K++LF +      
Sbjct: 171 AIFEAGISMPMEMLRLQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVD------ 224

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGK 298
            A  +  DA S E+ +   N G    ++G+       + H+    +      +T+    +
Sbjct: 225 -ADHFVYDADSDEIQRGIDNLGLSDKAIGWSLTPGKAYYHVSYSHSGDGTTIITVQHADE 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355
                 P   +  + NA     L   + + +A     L +      +  R E     +  
Sbjct: 284 SSTVTIPFADQASIQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGN 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             I   Y +  NSL + L   +  T     + +++        Q  R +  ++   +A
Sbjct: 344 RLINDAYNNDINSLRIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIA 401


>gi|331092522|ref|ZP_08341344.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400743|gb|EGG80346.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 461

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 142/414 (34%), Gaps = 43/414 (10%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G + +V ++A     ++F+  +R N P+L   +  + L    +       E  +AV+GT 
Sbjct: 69  GIDVVVYTAAIHEDNEEFAEAVRQNIPML---SRAELLGQLMTNY-----ECPIAVSGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  +    G     I     + +   + R+   S +++ +A  Y +S     
Sbjct: 121 GKTTTTSMLSHVLLE-GEKDPTISVGGILKAINGNIRVG-NSGVFVTEACEYTNS----- 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                  H L                N+  DH+D+ +       +  R F +LLP+    
Sbjct: 174 -----FLHFL---------PKISIILNVEEDHMDFFKDIDDIRQSFHR-FAQLLPQNEEG 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFL 303
            +   +   +++        CRVL+ G  G + +  K  + +     +       +F   
Sbjct: 219 TLII-NGEIEKIEAITDGLTCRVLTYGLHGDYDYSAKNISYNETGCTSFDFYRFGEFADR 277

Query: 304 FPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             L   GE  V NAL A  +     +    + + L        RFE+ G    G  I  D
Sbjct: 278 ISLSVTGEHNVSNALSAIAVGELTNVPLESIKKGLLSFSGTDRRFEYKG-ELNGFTIIDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    +   L +++         +F                 AL LAD  ++ D    
Sbjct: 337 YAHHPTEITATLSSVKHYPHRETWCIFQPHTYTRTKAFFHEFAEALSLADHVLLVDIYAA 396

Query: 422 SEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E        E +  EI           +        ++     D+L+  G G 
Sbjct: 397 RETDTLGMSSELLAEEIKKLGTDAHYFPDFKSVENFVLKHCIHDDLLITMGAGD 450


>gi|241205556|ref|YP_002976652.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859446|gb|ACS57113.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 471

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 144/418 (34%), Gaps = 51/418 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLEAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ R  +   ++++ G      +  K V     +    + +  +        
Sbjct: 218 LDHPEVQSLVGRIEDR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVIEL 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+
Sbjct: 276 KGLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L+  R    GR+I V                    + AD   +    
Sbjct: 335 DDYGHHPVEIKAVLRAARESCKGRVIAVHQPHRFSRLASLFEEFAACFNDADSIFLAPVY 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA--IRTA-------IEMLNKQDVLVVAGKG 468
              EDP +    +   +   I+ G   +A  I +A        E+    D +V+ G G
Sbjct: 395 AAGEDPIEGIDSV--SLVSRIKSGGHRDARFINSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|297621605|ref|YP_003709742.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297376906|gb|ADI38736.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 447

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 89/366 (24%), Positives = 137/366 (37%), Gaps = 43/366 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           +++LAV GT GK++ +S +  + +  G   SF IG    +++F  + +    S       
Sbjct: 102 KDVLAVGGTHGKTTSSSLLAWVLEVCGFSPSFAIG--GIVANFKANGKAGEGS------- 152

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                         + S   L ++R  G        TN+G DH+D+HQT++   N     
Sbjct: 153 --------CFVAEADESDGTLARYRSFG-----AIVTNIGLDHMDHHQTEERLLNCFRTF 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT 292
           F + +  E+      DD       KR      + +S G+       +     +       
Sbjct: 200 FSK-VQNEAFCFWCGDD-------KRLQTLNPKGVSYGFHENNRLRVDHFRQVGWTSIFD 251

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +GK F D    L GE    NA    GL + +G   + + E L+    V  R E V  
Sbjct: 252 VVFDGKRFADIEVLLAGEHHALNAAAVFGLSLRLGAQESKIREALKTFKGVARRCE-VKG 310

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGD-RDQGKRPIMGKIALDL 409
              G     DYAH    +   LK IR  +  R IV VF      R +    + G      
Sbjct: 311 EKNGILFLDDYAHHPTEIRATLKAIRQASPDRRIVAVFQPHRYTRTRDCMGMYGST-FHS 369

Query: 410 ADIAIVTDDNPRSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AD  IVTD +   E P        I +E+            R +      + L K DV+V
Sbjct: 370 ADQVIVTDIHAAGESPIPGVEVCHILSELEKNSSVKCRYLPREDLSCKLSKFLEKGDVVV 429

Query: 464 VAGKGH 469
             G G+
Sbjct: 430 TLGAGN 435


>gi|261855072|ref|YP_003262355.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
 gi|261835541|gb|ACX95308.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
          Length = 491

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 127/364 (34%), Gaps = 37/364 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV+S+A    +          + +V    + L+       G      LAV GT GK+
Sbjct: 85  ADVIVISTAVKADNPELAAAQAKRLPIVRRA-EMLAELMRFRIG------LAVAGTHGKT 137

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   +G       PT  I                L+ + +    +G   V+ 
Sbjct: 138 TTTSLLAAILAEAGWD-----PTYVIGG------------KLLSSSSNARLGRGEYLVAE 180

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S     H    ++      TN+  DH++ +             F   LP    A++ 
Sbjct: 181 ADESDASFLH----LQPHVAIVTNIDADHLETYDGNFERLVDHFIEFLHNLPFYGLAVLC 236

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
           ADD  +  +  R      +VL+ G  Q   +    V +     +  +++  +  FD    
Sbjct: 237 ADDPVAAGITARVGR---QVLTYGIDQPADVRATDVYSDGFGSRFVVNLPNQTQFDCRLA 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDY 362
           +PG   V NAL A  +   +G+  A + + L     V  R E  G  +  G+   +  DY
Sbjct: 294 MPGRHNVLNALAAITVAQDLGVPVAAIQQALTSFQGVGRRLERRGALAIKGKKLPLIDDY 353

Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H    +E  L+ +R      R++V+F                  L   D  I+ D    
Sbjct: 354 GHHPREVEATLQAVRAAWPDVRLVVIFQPHRFSRTRDLFEDFVRVLSTVDHLILLDVYAA 413

Query: 422 SEDP 425
            E P
Sbjct: 414 GEAP 417


>gi|330815444|ref|YP_004359149.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
 gi|327367837|gb|AEA59193.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
          Length = 465

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 142/431 (32%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGSGDFIVAEADESDASFLNLYPVIEVITNIDEDHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         ++V A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAEVRAEQVDARDGRMHFTVI 261

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            +G      +  LPG   V NAL A  +   +G+  A + + L   + V  RF+  G   
Sbjct: 262 RDGLAPLRVVLNLPGLHNVQNALAAIAIATDLGVADAAIQQALADFNGVGRRFQRYGELA 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALD 408
            + GG   +  DY H    +   +   R    GR +V+ F                  L 
Sbjct: 322 AADGGSYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVNVLS 381

Query: 409 LADIAIVTDDNPRSEDPEKI-----------RAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             D  ++T+     E    I             EI    P F+   + + A      ++ 
Sbjct: 382 TVDALVLTEVYAAGE--AAIPTASGEALSRALREIGRVDPSFVAGVDEVPA--ALARVVR 437

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 438 AGDVVITMGAG 448


>gi|169629089|ref|YP_001702738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus ATCC 19977]
 gi|169241056|emb|CAM62084.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus]
          Length = 491

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 133/433 (30%), Gaps = 59/433 (13%)

Query: 6   LIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +   +  E++      I   + R+ ++   V  DSR +  G +F+A+ G + DGH     
Sbjct: 1   MTVAEIAEIVGGRLDGISAQEARQARVTGTVEFDSRQVSPGGLFLALPGARADGHDHAR- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE------- 115
                      ++        A      P +VV  T    +  ++  +            
Sbjct: 60  ----------GAAEAGAVAVLAARPVGVPAIVVPPTGVARTEVSALEHDSDGSGAAVLAA 109

Query: 116 -----------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                             I+ +TG+SGK+S    +  +    G      G  +       
Sbjct: 110 TAALAAEVARRLTARGLRIVGITGSSGKTSTKDLIAAVLSPLGEVVAPPGSFNNELGHPW 169

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                T S  +L   LS             A   G             G   N+G  H+ 
Sbjct: 170 TVLRATESTKFLVLELS-------------ARRPGNIAELAAIAPPSIGVVLNVGTAHLG 216

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              ++QA  + K  L  + L     A++ ADDA    +  +      R  SV +      
Sbjct: 217 EFGSRQAIADTKGEL-PQSLSGGGVAVLNADDAAVAAMAAKTPARVVRT-SVHHPADIWA 274

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +       + + T+            + GE  V NAL AA + +  G   A V   L  
Sbjct: 275 TEVSVDDLARARFTLHAGQDSVPVQLAVHGEHHVSNALAAAAVALECGATLAQVAAALAG 334

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGG 392
              V  R   V T   G  +  D Y    +S+   LK + ++        R   V G   
Sbjct: 335 AGPVSRRRMEVSTRDDGVTVINDAYNANPDSMMAGLKALVSMARHGGEPRRSWAVLGEMA 394

Query: 393 DRDQGKRPIMGKI 405
           +          +I
Sbjct: 395 ELGPDAISEHDRI 407


>gi|167627720|ref|YP_001678220.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668292|ref|ZP_04755870.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876824|ref|ZP_05249534.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597721|gb|ABZ87719.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842845|gb|EET21259.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 940

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 140/390 (35%), Gaps = 35/390 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +   + YG     I A+TGT+GK++ +  V  + + +G     +G T+T   +       
Sbjct: 483 MLIPKEYGNARIPIAAITGTNGKTTTSRMVAHMWKNAGK---IVGLTTTDGVYINGKLTV 539

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                    A   L    V    +E +  GL +  +       G+  N+  DH+      
Sbjct: 540 AGDTTGPTSAQMVLKDPSVEMAILETARGGLLRSGMGYDYCNVGACLNVSSDHLGLKGIN 599

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI------ 277
                AK++       K+  A++ ADD    ++  +        +++  +   +      
Sbjct: 600 TLEDLAKVKSIVPQAAKD-VAVLNADDPNVLKMSAKVTAKHILYVTMNPEHALVKQHIRA 658

Query: 278 --HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--------FQVYNALVAAGLCIAIGI 327
                 +    N   +TI         L+               V N++ A  +C ++G+
Sbjct: 659 GGKACIIEKGVNGDMITIFDNNVHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGM 718

Query: 328 DSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
               + + L       +  PGR  +        ++ +DY H   +++++ + I  +  SG
Sbjct: 719 SLDDLRDGLRTFVTSFYQAPGRMNWF--EEHPFKVLMDYGHNPAAIKLVSQMIDNMEFSG 776

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE 441
           + I V    GDR       + K A    D  I   DD+ R     +I   +  G+     
Sbjct: 777 KKICVLASPGDRRDQDVYEIAKTAAPYYDYFICKGDDDTRGRADGEIPRMLKEGLIEAGV 836

Query: 442 KGNRIE-------AIRTAIEMLNKQDVLVV 464
             +RIE       A+  A+ M    D++V+
Sbjct: 837 DASRIETIQSEQKAVDHALSMAQDGDLVVI 866


>gi|13471548|ref|NP_103114.1| UDP-N-acetylmuramate--L-alanine ligase [Mesorhizobium loti
           MAFF303099]
 gi|23821883|sp|Q98KB4|MURC_RHILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|14022290|dbj|BAB48900.1| UDP-N-acetylmuramate-alanine ligase [Mesorhizobium loti MAFF303099]
          Length = 466

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 137/417 (32%), Gaps = 47/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + +V        L   R         +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKTNPELKAAREKLLPIVRRAEMLAELMRFR-------QAVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVATLLEAGGLDPTVING-GIINAYGTNARMGDGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++ +      A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGSFDKVREA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ R  +   RV++ G      +            +  + +  +        
Sbjct: 218 TDHPEVQALVGRIEDR--RVITYGENAQADVRFTNHRMAGATSEFDVVIRDRKTGSQSTI 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   V NA  A  +   +G+    + + L     V  RF   G+   G  ++
Sbjct: 276 SGLRLPMPGRHNVSNATAAIAVAHELGLSGEAIKKGLSSFAGVKRRFTHTGSW-NGVDVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +LK  R+ T GR+I +                    + AD  IV    
Sbjct: 335 DDYGHHPVEISAVLKAARSATKGRVIAIAQPHRFTRLHDLFNEFSACFNDADTVIVAPVY 394

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
              EDP      +++ + I  G            AI   I  +    D +V  G G+
Sbjct: 395 AAGEDPIDGVSSDELVSRIRAGGHRDARYIEGPTAIAPIIRGLAKPGDFVVFLGAGN 451


>gi|194290812|ref|YP_002006719.1| udp-N-acetylmuramate--l-alanine ligase [Cupriavidus taiwanensis LMG
           19424]
 gi|229486486|sp|B3R6V8|MURC_CUPTR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|193224647|emb|CAQ70658.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Cupriavidus taiwanensis LMG 19424]
          Length = 474

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 83/436 (19%), Positives = 144/436 (33%), Gaps = 59/436 (13%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            GH     A   GA A+VVS+A S  +       +  I VV      L+       G   
Sbjct: 55  HGHD---AANVSGANAVVVSTAVSGDNPEVLAARSQRIPVVPRAVM-LAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +    GL    +     ++S   + RL T         +
Sbjct: 108 ---VAIAGTHGKTTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIV 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + ++               +  +    TN+  DH+D +    A        F
Sbjct: 159 AEADESDASFLN---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI 293
            + LP    A++  DD   +E++         V+  G+            A+  +   T+
Sbjct: 204 TQRLPFYGIAVLCVDDPNVREILPFVSKP---VVRYGFAEDAQIRAVDARAVDGQMHFTV 260

Query: 294 --SVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              + G      + +  LPG   V NAL A  +   + +  A +++ L + H V  RF+ 
Sbjct: 261 LRQLNGHTEPPLEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQR 320

Query: 349 VGT-----NSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            G       +    +  DY H    +   +          R+++ F              
Sbjct: 321 YGEVATPDGAGTFTLVDDYGHHPVEMAATLAAARGAFPERRLVLAFQPHRFTRTRDCFED 380

Query: 403 GKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIE---AIRTA 452
               L   D  ++++     E P          RA  + G    +      E   AI  A
Sbjct: 381 FVKVLGTVDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILNA 440

Query: 453 IEMLNKQDVLVVAGKG 468
           +      DV+V  G G
Sbjct: 441 V---RPGDVVVTMGAG 453


>gi|210634199|ref|ZP_03298039.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
 gi|210158889|gb|EEA89860.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
          Length = 474

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 133/419 (31%), Gaps = 53/419 (12%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +VVS+A      +         P+         L          +    +A  GT GK+
Sbjct: 79  VVVVSTAIPETNPELMRARELGIPVWHRAKMLSALG---------YGRTTVAAAGTHGKT 129

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +S V  +  R G   SF IG    +  +  + +                      +  
Sbjct: 130 TTSSMVATMLDRMGLDPSFLIG--GVVEGYGTNGKNGDGE-----------------YFV 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA            +       TN+  DH+D++ + +   +     F  L+ ++   I+
Sbjct: 171 VEADESDSS---FLYLNPHVVIVTNVEADHMDHYSSLEEIEDT-FCAFMNLVGEDGTVIV 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLF 304
             +D +  E+  R+          G            +       ++++         + 
Sbjct: 227 CGEDPHLVELA-RSTGRAVLTYGEGEGFDVSCAPMASSHTFGTDFSVTLPDGAVRTVAIK 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG   + NA  A      +G+D+      L        RF  VG  +RG  +  DY H
Sbjct: 286 NNPGRHNMLNATAALASAYVLGLDTEDAARALSTFEGARRRFTHVG-ETRGVMLVDDYGH 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               ++  L   +++   ++ VVF                 A   AD  ++ D  P  E 
Sbjct: 345 HPTEVKATLHAAKSLDFAKVAVVFQPHRYTRLQALCDDFVDAFADADTVVLIDVFPAGEM 404

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-----EMLNKQDVLVVAGKGHETV 472
           P      + +  +I    P       R  A   A+     E++   D+L+  G G  T 
Sbjct: 405 PIPGVTSKMLADKIRAAHPDKQV---RYVADHQALMTCLDEVVQAGDLLITMGAGDVTT 460


>gi|319404509|emb|CBI78114.1| UDP-N-acetylmuramate--alanine ligase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 456

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 137/428 (32%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A   GA   +++S+A    +          + VV        L   R      
Sbjct: 39  GHR----AENLGAAEVVIISTAIKKTNPEYIAAQKRHLPVVKRAEMLAELMRFR------ 88

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +   +G     +     I+++  + R+     + +    
Sbjct: 89  -RTIAIGGTHGKTTTTSMVAALLD-AGHFDPIVINGGIINAYGTNARMGDGDWMVVEADE 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S                          +       TN+  +H+D++    A   A  R F
Sbjct: 147 SD--------------------GTFLKLPADIAVVTNIDVEHLDHYGNFNAIREA-FRQF 185

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E +P    A++  D    + +  R H+          Q     L  +     K    I 
Sbjct: 186 VENVPFYGFAVMCIDHPEVQTLASRIHDRWVITYGANPQADIRFL-NLSMEGQKACFDIL 244

Query: 295 VEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +         + + P+ G+  V NA  A  +   +GI    + + L +   V  RF 
Sbjct: 245 IRSRKTGEKTEINNLILPMSGKHNVSNATAAIAIAHELGISPEAIKKGLAEFGGVKRRFT 304

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G N  G  I+ DY H    ++ +L   R    G II +                    
Sbjct: 305 KTG-NWNGVEIFDDYGHHPVEIKAVLHAARESAKGNIIAIMQPHRYTRLYHLFDDFSTCF 363

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           + AD  ++T      E+P      +++   I + G        +  + I     +    D
Sbjct: 364 NDADTVMITPVYAAGEEPIAGFGSKELVEHIQMAGHRDVHLINSLEDIISIVSRLAKSGD 423

Query: 461 VLVVAGKG 468
            +V  G G
Sbjct: 424 YVVFLGAG 431


>gi|167622396|ref|YP_001672690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella halifaxensis
           HAW-EB4]
 gi|189082499|sp|B0TQN8|MURC_SHEHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167352418|gb|ABZ75031.1| UDP-N-acetylmuramate--alanine ligase [Shewanella halifaxensis
           HAW-EB4]
          Length = 489

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 147/427 (34%), Gaps = 49/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q   +G + +VVS+A S  +          I VV    + L+      +G    
Sbjct: 72  GHD-ASQV--KGMDVVVVSTAISADNPELVAAKELRIPVVRRA-EMLAELMRYRHG---- 123

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  I   +        PT  I                    ++
Sbjct: 124 --VAVAGTHGKTTTTSLIASIYGEAERD-----PTFVIGGLLNSAGTNARLGHSRY-LIA 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D ++            F 
Sbjct: 176 EADESDASFL---------------HLQPMVSVVTNIEADHMDTYEGDLEKLKTTFVDFL 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      R+++ G+     +            + T+ 
Sbjct: 221 HNLPFYGVAVVCIDDPIVRELIPRIGR---RIVTYGFSDDADVQALDFKQTGYSCEFTVK 277

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
             G  D      LPGE  V NAL A  +     I+ A +++ L +   +  RF+ +G   
Sbjct: 278 RAGLADLRLSVNLPGEHNVLNALAAIAVATEDDIEDAAIIKALAEFQGIGRRFQQIGEFA 337

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T+    ++  DY H  + +   +K  R      R+++++                  L  
Sbjct: 338 TSKGEIKLVDDYGHHPSEVAATIKAARLGWPERRLVMIYQPHRYSRTRDLYEDFVEVLSQ 397

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAI-EMLNKQDV 461
            D  ++ D     E P        +   I + G    +   +  E + T + E+L   D+
Sbjct: 398 VDCLLMLDVYAAGEAPIPGADSRALCRSIRVRGQVEPVFVAS-TEQLETILPEILQGGDL 456

Query: 462 LVVAGKG 468
           L+  G G
Sbjct: 457 LLTQGAG 463


>gi|288574852|ref|ZP_06393209.1| UDP-N-acetylmuramate/alanine ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570593|gb|EFC92150.1| UDP-N-acetylmuramate/alanine ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 482

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 139/405 (34%), Gaps = 43/405 (10%)

Query: 82  FSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I  +   LVV         +   + ++    ++    + V GT GK++ +S +  I
Sbjct: 78  YSSAIPEDNEELVVARESGIAVAQRAQVLSAIFDVRYG---IGVAGTHGKTTTSSMIGLI 134

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +GL      PT  I     D                   S G               
Sbjct: 135 LSGAGLE-----PTVAIGGELCDIGCNARLGSGPHMVAELDESDGSFLCF---------- 179

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN+  DH++++    +  N     F + L K   +++  +D   + +
Sbjct: 180 ------HPTISVITNVDWDHVNHYPDFDSVLNT-FESFSKNLRKGGLSVLCGEDGGVQSL 232

Query: 257 MKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDF-DFLFPLPGEFQV 312
           +K     G +  ++ G+  ++         ++   V+ SV   G+        + G+  V
Sbjct: 233 LKMMEKDGPKAKVTYGWGDRWDWGATDIEYNHGGGVSFSVRKHGRSIGRIELSVSGDHNV 292

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL +  +   + +   ++   L +      R +F G       +Y DY H    +E  
Sbjct: 293 LNALASCIVADTLSVPFDVIKRTLRQFKGAKRRLQFKGGVEH-IDVYDDYGHHPKEVEAT 351

Query: 373 LKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRA 430
           LK I  I   R I+V F                  L  AD  +V    P  E P + + +
Sbjct: 352 LKAISQIFPERKILVAFQPHRFTRTAAMAEDFAEVLTYADKVVVLPIYPADEPPIDGVTS 411

Query: 431 EI------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +      +   P F     + +AI   + ++ + DV++  G G 
Sbjct: 412 HMIGDHLSMKKHPSFFVADRKKDAIDKVMSLVEEGDVILTLGAGD 456


>gi|149198201|ref|ZP_01875248.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
 gi|149138803|gb|EDM27209.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
          Length = 455

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 143/433 (33%), Gaps = 56/433 (12%)

Query: 10  DFPELINQLS----IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           DF EL   L+    +    + +       SD+R      +F A  G+  DGH ++  A+ 
Sbjct: 3   DFNELCQALNGEALVRDANYDDY--RAFESDTRKDLTDTVFFAFEGDNFDGHNYLDLAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTS 124
           +GA  +VV+    L         +  ++ VD+T K        L  K        +TG+S
Sbjct: 61  KGARVLVVAKEVEL-----LTLDSVAMIKVDDTVKAWQRLGHFLLQKQKSARRFGITGSS 115

Query: 125 GKSSVASFV---------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           GK+S  + +         +Q+    G ++  IG T  I     D    +           
Sbjct: 116 GKTSTNAILSQLLEFIRPKQVLSTHGNTNNHIGVTQNIVRLKGDESFFSLE--------- 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      V  +  G        +   A   T++G  HI       A F+ K+ +F 
Sbjct: 167 -----------VGTNHPGEIADLAKIVVPHAAILTSVGASHIGNFSGIDAIFDEKIDIF- 214

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQG-KFIHLKKVCAIHNKQQVTI 293
             + ++  AI+ A  A  K +            +S G +    + L        K    +
Sbjct: 215 RYMARDGVAIVPA--ALVKRIEDALPERKDITYISFGKEKYADVRLGSYELGLEKSTFLV 272

Query: 294 SVE-GKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++ G+       L GE Q+ N      L            + +   L  + +   R + 
Sbjct: 273 KLKSGESLSLESILSGEHQLLNICACVALLENYQEEYSFTISDLKSALSSVALPGMRMKT 332

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP----IMGK 404
                +   +   Y     S    L  ++++    ++V+       D  K+     +   
Sbjct: 333 EKVEDQTF-VLDCYNANPQSTSAFLDWVKSVYKSGVLVLGDMLELGDMAKKYHQEILDKA 391

Query: 405 IALDLADIAIVTD 417
            A+   D+  V +
Sbjct: 392 KAMQGFDLVTVGE 404


>gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 835

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 141/404 (34%), Gaps = 37/404 (9%)

Query: 20  IFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           I      ER I  + +DSR + +    +F A+     DGH +IPQ    G  A  +    
Sbjct: 14  IQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLYEHGVRAFFICEPI 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                      +  I+ V  T + L   AS    ++   ++ +TG++GK+ V  ++  + 
Sbjct: 74  E---PYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKTVVKEYLYHLL 130

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                     G    + S       +  S + +  ++  +  +    +     S  ++  
Sbjct: 131 S---------GCYRIVRS-----PKSYNSQLGVPLSILNMEEEHTLAIFEAGISMPMEML 176

Query: 198 RLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           RL   I+   G  TN+G  H +   +       K++LF +       A  +  DA S E+
Sbjct: 177 RLQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVD-------ADHFVYDADSDEI 229

Query: 257 MKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +   N G    ++G+       + H+    +      +T     +      P   +  +
Sbjct: 230 QRGIDNLGLSDKAIGWSLTPGKAYYHVSYSHSGDCTTTITAQHADESSTVTIPFADQASI 289

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            NA     L   + + +A     L +      +  R E     +    I   Y +  NSL
Sbjct: 290 QNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSL 349

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            + L   +  T     + +++        Q  R +  ++   +A
Sbjct: 350 RIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIA 393


>gi|296134865|ref|YP_003642107.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
 gi|295794987|gb|ADG29777.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
          Length = 469

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 93/433 (21%), Positives = 139/433 (32%), Gaps = 57/433 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  Q A+A+VVS+A    +          I VV      L+       G    
Sbjct: 56  GHD---AAHVQDADAVVVSTAVRADNPEVLAARARHIPVVPRAVM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I        +             
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEGGLD-----PTFVIGGRLNSAGVNAK---------- 150

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               QG   V     S     + L     +    TN+  DH+D +    A        F 
Sbjct: 151 --LGQGEYIVVEADESDASFLNLL----PVMAVVTNIDADHMDTYGHDPARLRHAFVDFI 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI- 293
             LP    A++  DDA  + +M         + S G+          V A   +   T+ 
Sbjct: 205 ARLPFYGAAVLCVDDAAVRGIMPFVSKP---ITSYGFAEDAQVRAIDVRAEGAQMHFTVL 261

Query: 294 ---SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               V+         LPG   V NAL A  +   + +D A +   L     V  RF+  G
Sbjct: 262 RRNGVQLPPLAVTLNLPGRHNVQNALAAIAVATELNVDDAAIQRALAGFTGVGRRFQRYG 321

Query: 351 T----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKI 405
                +     +  DY H    +   L   R    GR +V+ F                 
Sbjct: 322 EVAAHHGGHFTLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYTRTRDLFEDFVK 381

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRA--EIIHGI-------PGFIE-KGNRIEAIRTAIEM 455
            L  AD  ++ +     E P        +   +       P F+E   +  +AI   +EM
Sbjct: 382 VLGEADAVLLAEVYAAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVADLPQAI---LEM 438

Query: 456 LNKQDVLVVAGKG 468
             + DVL+  G G
Sbjct: 439 AREGDVLICMGAG 451


>gi|237747015|ref|ZP_04577495.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes HOxBLS]
 gi|229378366|gb|EEO28457.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 141/433 (32%), Gaps = 55/433 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ I + A+AIVVSSA    +          + +V      L+       G    
Sbjct: 56  GH--APENIEK-ADAIVVSSAIRDDNPEVLAARKKNVPIVPRAVM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    G       PT  I     ++             ++
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEGGFD-----PTFVIGGRL-NSAGANAGLGAGDFIVA 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + ++               +  +    TN+  DH+D +    A        F 
Sbjct: 160 EADESDASFLN---------------LNPVIEVITNIDADHMDTYGHDFARLKQAFVEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
           + LP     ++  DD+  +E+          + + G+ +   +      A       T  
Sbjct: 205 QRLPFYGRVMLCIDDSNVREIKPFISKP---ITTYGFHEDADVRAIDARAEGTLMIFTAL 261

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G    +     PG   V NA     +   +GI+ + +   +EK   V  RF  +G   
Sbjct: 262 QKGHPPLEICLNQPGMHNVQNACAVIAIARELGIEDSAIQRAMEKFTGVNRRFTRLGKIR 321

Query: 351 -TNSRGGRI-----YVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
                G +I       DY H  + +   +        + R+++VF               
Sbjct: 322 LPQKDGEKIAEVELVDDYGHHPSEMAATLAAARGAYPNRRLVLVFQPHRYTRTRDLFEDF 381

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAE--------IIHGIPGFIEKGNRIEAIRTAIEM 455
              L   D+ ++ +  P  E P  I A+         + G    +   +  E     + +
Sbjct: 382 VKVLSATDVLLLGEVYPAGEQP-IIAADGRTLARTIRVAGKVDPVFVEDIAEMPSAVLNV 440

Query: 456 LNKQDVLVVAGKG 468
           +   DV++  G G
Sbjct: 441 IEDGDVVITMGAG 453


>gi|150389045|ref|YP_001319094.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149948907|gb|ABR47435.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 887

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 141/361 (39%), Gaps = 37/361 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + +I +++GL    +G TST   + QD  +          A S L    V    +E + 
Sbjct: 497 MLAKILRQNGLV---VGMTSTGGIYVQDELICGGDATGPRSAESILLDNRVEVAVLETAR 553

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL    L       G  TN+G DH+      T +   + K  L  E +  +  AI+ A+
Sbjct: 554 GGLINKGLAYDLADIGIITNIGNDHLGMDGVNTLEEMADVKA-LVTEAIRPQGYAILNAE 612

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEG------- 297
           D + + + +R     C++L           K    +   A++ K  +    +G       
Sbjct: 613 DKFVERIAQRIT---CQILYFAKDMNNKVIKDHVNRGEKAVYIKDDIIQVFDGEKEKPVI 669

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGT 351
             ++    +       + N+L A       GI + ++ + L +        PGRF     
Sbjct: 670 HVENIPATYGGVLIHNIENSLAAVAAAFGHGIKTDVIAKGLSQFQTDASTNPGRFNIFEM 729

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                R+ +DY H  +  + +L+ ++ +   R+I V G  GDR       +G+I+    D
Sbjct: 730 EK--CRVVIDYGHNIDGYQKVLEGLKLMKKNRLIGVIGVPGDRTDISTLKIGEISGKHFD 787

Query: 412 IAIVTDD-NPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
              + +D + R  +P ++   +  G             +   I+A++ A+E   + D+++
Sbjct: 788 HVYIKEDKDLRGRNPGEVANLMKKGCALGGLKEEEIQIEHCEIKALQKALESAQQGDIII 847

Query: 464 V 464
           V
Sbjct: 848 V 848


>gi|15805654|ref|NP_294350.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
 gi|25008807|sp|Q9RWN9|MURC_DEIRA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|6458326|gb|AAF10205.1|AE001920_8 UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
          Length = 482

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 127/412 (30%), Gaps = 50/412 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++V+S    +       +    + V   R  ++L    L        + V GT GK++  
Sbjct: 95  VLVASEAVPKSHPELAAARAAGVEV---RPRMALLGELLAAGPS---VGVIGTHGKTTTT 148

Query: 131 SFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S +      +G   S  +G    +  F  + R  T                G     V+ 
Sbjct: 149 SMIAVAMYGAGLDPSAFVG--GNVPEFGGNARTGT----------------GPFVAEVDE 190

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL---FEELLPKESPAII 246
           S  G        +      FTN   DH+        Y++        F   + +    + 
Sbjct: 191 SDRGFAL-----LGCETAVFTNAEDDHVG--GELATYWSTVEEQHAGFARFVAQSGRVLF 243

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
            AD      +   A       L+ G   G       V    +     +   G+   +   
Sbjct: 244 CADWPGLDTLCSGAREQ----LTYGQSAGADYRAVNVRPDESGTTFDVEFRGERLGEARV 299

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V N L A  +    G D       L   H    R+E  G    G  +  DYAH
Sbjct: 300 SLPGTHNVLNGLAALAVTHLYGGDFDRAARALADFHGPGRRWEIKGERG-GALVVDDYAH 358

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +  +   ++  R  T  R+ VVF         +       AL  AD  +V D    SE 
Sbjct: 359 NATKVASAVQAARQ-TGRRVRVVFQPHRYLRTQQSWPRLADALMDADEVLVLDIAAASET 417

Query: 425 PEK------IRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P +      I   +  G  P      +R   +R   E     D++V  G G 
Sbjct: 418 PIEGVHATLITDRMTQGGHPNVHYCPDRAAVVRDLRESAQPGDIIVTMGAGD 469


>gi|225028221|ref|ZP_03717413.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
 gi|224954533|gb|EEG35742.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
          Length = 466

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 142/427 (33%), Gaps = 56/427 (13%)

Query: 67  GAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117
           GA+ ++   A ++ D      ++A I  +         +    +  + L G+        
Sbjct: 60  GAKVVIGQKAENITDDIDLVVYTAAIHESNEEFAAAKNKGIPMMTRAALLGQIMANFAKS 119

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  S +  I  ++  +   +     +     + R+     ++L +A  Y 
Sbjct: 120 IAVAGTHGKTTTTSMLTHILLQA-DTDPTVSVGGMLDRIGGNIRVGHSD-LFLTEACEYT 177

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S    +                    +     N+  DH+D+ +  +   N+    F   
Sbjct: 178 NSFLEFY-------------------PLYSIILNVEEDHMDFFKDIEDIKNS-FHKFASQ 217

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---IS 294
              +   II  D  ++  ++        + ++ G      +         +   +   I+
Sbjct: 218 TADDGLIIINGDMGHTDFILN---GLSQKHVTFGLNPDNDYTAADITFDKEGNASYNLIA 274

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +       + G   V N+L A     AIG+    + + L        RFE+ G+   
Sbjct: 275 HGQEKGRITLKVKGRHNVMNSLAAIACTEAIGLPLDAIRKGLLSFGGTHRRFEYKGSLGD 334

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH    +   L   +      + V+F                 AL+ AD  +
Sbjct: 335 -VTVIDDYAHHPTEIRATLSAAKDYPHDELWVIFQPHTYTRTKAFLPEFAKALEQADHIV 393

Query: 415 VTDDNPRSE---------DPEKIRAE---IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + D     E         D  K+  E    +H  P F E  + ++A       +   D+L
Sbjct: 394 LADIYAAREVDTGEVSSKDVMKLLQEDGQDVHYFPSFEEIKDFVKA------HVKGHDLL 447

Query: 463 VVAGKGH 469
           +  G G+
Sbjct: 448 ITMGAGN 454


>gi|169335453|ref|ZP_02862646.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258191|gb|EDS72157.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
          Length = 466

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 145/407 (35%), Gaps = 38/407 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSV 129
           ++    L  +SA IR N P  V    +  L L  S   G   ++ +  +AV+GT GK++ 
Sbjct: 65  ITDDIDLIVYSAAIRENNPERVEGKNKGILELERSVFLGLISRYYKRTIAVSGTHGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  +   + L    I    T+     ++R+             ++        S   
Sbjct: 125 SSLMSLVFLNADLDP-SISIGGTLKKINGNSRVGDSD--------YFVIEACEFVDSFLH 175

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S H              G+  N+ +DH+DY            R F E+ PK+   ++  D
Sbjct: 176 SRH------------FVGTIQNIEKDHLDYFTGGIEQIKESFRKFAEITPKDGMLVVNGD 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFD--FLFPL 306
           D    +++       C+++  G       + K             V +G +F   F   +
Sbjct: 224 DENVLDILD---GLECKIVKAGLSDSNDFVAKNITYDKFGNPNFDVYKGGEFYHKFELNI 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  V NAL    +     ID  ++ +  ++      RFE  G       +  DYAH  
Sbjct: 281 PGEHNVLNALSVVAVSDFFMIDKEVINDSFKEFTGAKRRFEKRGI-VNDITVIEDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             L++ +   +     ++ V+F                 A+  AD  I+ D     ED E
Sbjct: 340 TELKVTIDACKNYEHNKLFVIFQPHTYSRTFLLFDEFVEAMKGADELILNDIYSDREDNE 399

Query: 427 KIR--AEIIHGIPGFIEKGNRI----EAIR-TAIEMLNKQDVLVVAG 466
                 +I + +       +R+      IR   +      D ++VAG
Sbjct: 400 WNIYSEDIANKVIEKYNIPSRVISEFSDIRDYVVNNAKPGDFVLVAG 446


>gi|121611475|ref|YP_999282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556115|gb|ABM60264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 475

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 136/367 (37%), Gaps = 28/367 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  V +D+R +QAG +FVA+ G + D H F+               A +         
Sbjct: 44  TPVARVHTDTRTVQAGDLFVALRGPRFDAHAFL--------AQARAGGAAAALAQGGLAD 95

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  P + V ++   L+L A+    +    ++AVTG++GK++V   V  I +         
Sbjct: 96  AGLPGIEVPDSLAALALLAAGWRAQFDLPLIAVTGSNGKTTVTQMVAAILRA----WQGD 151

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
              +T  +F         + I L   L  L ++    V     +H  +   L GI +   
Sbjct: 152 AALATQGNF--------NNAIGLPLTLLRLRARHTVAVVELGMNHPGEIAALAGIAQPGV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H+++  +  A       +F  L P    A+  ADD Y     + A    C 
Sbjct: 204 ALVNNAQREHLEFMHSVAAVARENGSVFASL-PAHGVAVFPADDDYQALWQELAAGREC- 261

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            L  G  G  +       +     +T++           + G   V NAL AA   +A G
Sbjct: 262 -LRFG-AGGAVDGADARWVDGAWALTLATPQGPVTTRLHIAGRHNVGNALAAAACALAAG 319

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVD-YAHTSNSLEMILKNIRTITSGR 383
              A + + L     VPGR         G    +  D Y    +S+   +  +  + + R
Sbjct: 320 APLAALAQGLSGFSPVPGRSRSFSIRHAGRQISVVDDSYNANPDSVRAAIALLAELPAPR 379

Query: 384 IIVVFGC 390
           ++V+   
Sbjct: 380 LLVLGDM 386


>gi|260655412|ref|ZP_05860900.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
 gi|260629860|gb|EEX48054.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
          Length = 461

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 154/432 (35%), Gaps = 55/432 (12%)

Query: 65  AQGAEAIVVSSAYSLQD-------FSATIRSNTPILVVDNTR--------KFLSLFASRL 109
             G    +    + L D       +S+ I S+ P LV    R        + LSL  +  
Sbjct: 38  EAGVPVYLGHDPHHLDDHKADILAYSSAIPSDNPELVTARERGIPVVQRAELLSLLFNSR 97

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G      + V GT GK++  S +  I +R+GL      PT  I     D          
Sbjct: 98  CG------VGVAGTHGKTTTTSMISLIAERAGLE-----PTVAIGGELCDIGCN------ 140

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                + L +  V    ++ S            +      TN+  DH++Y+ ++Q+  +A
Sbjct: 141 -----AKLGNGNVMVAELDESD-----GSFQFFQPSVAVVTNVDWDHVNYYPSRQSVVDA 190

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQ--GKFIHLKKVCAIH 286
            +  F   +P +   ++  DD   + ++ R     C+  ++ G +    F          
Sbjct: 191 FVS-FLANVPSDGFEVLCGDDPGVRALLGRLEGQNCQNRVTYGLEKGNDFYPTNLEQYPG 249

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                T++  G+        + G   + N+L A      +GI   L++  L + H V  R
Sbjct: 250 GGMSYTLNRFGRQVGRVRLTVSGTHNLLNSLAALAAGSRLGISFDLMVSALNEFHGVKRR 309

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGK 404
            +  G       +Y DY H  N L+  L  +  +    R++VVF                
Sbjct: 310 LQQKGNAGDDILVYDDYGHHPNELKATLTALGQMFPKRRLVVVFQPHRYTRTAALYEQFA 369

Query: 405 IALDLADIAIVTDDNPRSED--PEK----IRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN 457
             L  AD  I+       E   P      I+ +I    PG      ++++A    + +L 
Sbjct: 370 QVLSQADQVILLPIYAADEQQIPGVSSSLIQDKIHERHPGLCHLVRDKVDAEACVMSVLQ 429

Query: 458 KQDVLVVAGKGH 469
             D+L+ AG G 
Sbjct: 430 PGDLLLTAGAGD 441


>gi|238026133|ref|YP_002910364.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia glumae BGR1]
 gi|237875327|gb|ACR27660.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia glumae BGR1]
          Length = 466

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 139/430 (32%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+V S+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVTSTAVRSDNPEVLAARRLGVPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGSGDFIVAEADESDASFLNLYPVIEVITNIDEDHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP     ++  DD   ++++         V+  G         ++V A   +   T  
Sbjct: 205 QKLPFYGSVVVCVDDPNVRQILPFISKP---VVRYGLAPDAEVRAEQVAARDGRMHFTAI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            EG+     +  LPG   V NAL A  +   +G+  A + + L   + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVADAAIQQALADFNGVGRRFQRYGEIA 321

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIAL 407
               +    +  DY H    +   +   R    GR +V+ F                  L
Sbjct: 322 TADGAGSYTLVDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFEEFVNVL 381

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNK 458
              D  ++T+     E P      E +   +       P F+   + + A     + +  
Sbjct: 382 STVDELVLTEVYAAGEAPIPTASGEALARALRASGRVDPAFVATVDEVPA--ALAQRVRA 439

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 440 GDVVITMGAG 449


>gi|148273039|ref|YP_001222600.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|189028983|sp|A5CS50|MURC_CLAM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147830969|emb|CAN01914.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 476

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 92/455 (20%), Positives = 152/455 (33%), Gaps = 59/455 (12%)

Query: 45  IFVAIVGNKE---DGHLFIPQAIAQ----GAEAIVVSSAYSLQDFSATIRS-----NTPI 92
           +F+A  G++    D       A+      GAE  V   A  + D  A + +     + P 
Sbjct: 33  LFLA-AGHRVTGSDSRD--SDAVQALRELGAEIHVGHDAAHVGDADALVVTGALWQDNPE 89

Query: 93  LVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            V+   R           A  + G   + ++AV G  GK++    +      +G     +
Sbjct: 90  YVLAKERGLPILHRSQALAWLISG---QRLVAVAGAHGKTTSTGMIVTALLEAGRDPSFV 146

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                I                    L   S+ G   + V  +        L        
Sbjct: 147 NG-GVIGG------------------LGVSSAPGSEELFVVEADESDGSFLLYDTS--VA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D++ + +A+ +A +R            +I +DD  ++ V  R      RV
Sbjct: 186 LITNVDADHLDHYGSHEAFDDAFVRFASA---ASELVVISSDDPGARRVTARIEG---RV 239

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G                    T++ +G        +PG     NA  A  + + +G+
Sbjct: 240 VTFGEDPAADIRITDIVTDGPVAFTLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGLGV 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIV 386
           D    +  L        RFE      RG  +Y DYAH    +   L+  RT+   GRII 
Sbjct: 300 DPDDAIAGLAGFSGTGRRFEL-HAEVRGVSVYDDYAHHPTEVRAALEAARTVVGEGRIIA 358

Query: 387 VFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFI 440
           V       R +       ++  +LAD  IV D     EDP       + +E         
Sbjct: 359 VHQPHLYSRTRMMAGDFARVYEELADHTIVLDVFGAREDPIPGVTGALVSECFEDAGHVD 418

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
              +  EA   A E+    D +V    G     I+
Sbjct: 419 YLPDWQEAADRAAEIARDGDFIVTLSCGD-VYRII 452


>gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
 gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
          Length = 822

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 144/395 (36%), Gaps = 31/395 (7%)

Query: 27  ERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +  +N + +DSR I      +F A+ G + DGH FI      G    VV           
Sbjct: 24  DSMVNNLLTDSRKINNPFTSLFFALSG-RRDGHEFIGDVYQAGVRNFVV----FKLPVKV 78

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  +   LVVD+  K L   A     K   +++ +TG++GK+ V  ++ Q+        
Sbjct: 79  DLLRDANFLVVDDVLKALQKLAIHHREKFDIDVIGITGSNGKTIVKEWLYQLL------C 132

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                     S+     +         +    +   G+       S+ G  +     IK 
Sbjct: 133 ADKKIIRNPKSYNSQIGVPLSVWQMDDQHNLGIFEAGI-------STTGEMERLERMIKP 185

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  T++G  H +     +     K++LF          +IY  DA  K    R     
Sbjct: 186 TIGILTHMGSAHDEGFSGPEKKLEEKLKLFTHCSM-----VIYQYDALLKY-KARVPGKT 239

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S  ++   +++     I NK  +    +GK+ + L P   E  + NA+V     +A
Sbjct: 240 KFTWSRKFREVDLYVFNETIISNKYYLRGVFKGKEIECLVPFIDEASIENAIVCWATMLA 299

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN---IRTITS 381
           +G DS +  + LE+L  V  R E     +    I   Y     SLE+ L          +
Sbjct: 300 LGYDSQVADDRLERLVPVSMRMELKQGINNCSIIDDSYNSDFQSLEIALNFLNQQNQHQT 359

Query: 382 GRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +I+  +F  G ++    + +   ++    D  I
Sbjct: 360 RTLILSDIFQSGLEQAVLYQQVADLLSQKNIDKVI 394


>gi|213650215|ref|ZP_03380268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 370

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 137/384 (35%), Gaps = 30/384 (7%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +   
Sbjct: 1   DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY--- 57

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T S+F  D  +           L          + + A+  G     +   +  A  
Sbjct: 58  ---TASNFNNDIGVPI-------TLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAAL 107

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             NL   H++   +      AK  ++  L P+   AI+ AD+           +      
Sbjct: 108 VNNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRF 166

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           S            +    +  + T+       D L PLPG   + NAL AA L +A+G  
Sbjct: 167 SPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGAT 226

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A V   L  L  VPGR   +  +     +   Y     S+   ++ +  +   R++VV 
Sbjct: 227 LAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNANVGSMTAAVQVLSEMPGYRVLVVG 286

Query: 389 GC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GN 444
                G + +     +         D  + T             +++I    G  E   +
Sbjct: 287 DMAELGAESEACHLQVGEAAKAAGIDRVLSTGK----------LSQVISHASGVGEHFAD 336

Query: 445 RIEAIRTAIEMLNKQ--DVLVVAG 466
           +   I     +L +Q    ++V G
Sbjct: 337 KAALIARLHALLQEQPMMTILVKG 360


>gi|195953735|ref|YP_002122025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933347|gb|ACG58047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 446

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 127/381 (33%), Gaps = 37/381 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +V  DSR      +FVAI G K DGHL+I   + +     +V   +  ++  A  +S 
Sbjct: 21  IKDVFFDSRESIKDALFVAIKGEKTDGHLYIKNLLDENIAGFLVREDFDCKEILAKGKS- 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              L   +T K L   AS        N++A+ G++GK++    +  +             
Sbjct: 80  --CLKAKDTIKALQDIASLKRNSLKANVVAIAGSAGKTTTKELIAHVL------------ 125

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAG 207
              +    ++       P  +  A        + ++ +E  +  L+  +   +  K   G
Sbjct: 126 PGKVHKTYKNFNSQIGLPKVVITA-----DDDIGYLVLEMGATALEDVKKLTNIAKQHIG 180

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             +++G +H++   + +        +F+                Y K             
Sbjct: 181 VISSIGEEHLESFGSIENVVKGNFEVFDSPNLLSGV--------YPKAFHSFYKKEYGLS 232

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                    I +K V          I           P+       +A  A G+  + GI
Sbjct: 233 FCRFRDDADIRVKNVYIDEEGTHFEI----MGIRLTIPVLSIGIAESAAAAVGVLASFGI 288

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D   + +  E    V GR + +       RI  D Y     S++  +  I +      I+
Sbjct: 289 DWKELKDRFESFKGVQGRMQLIKKG--PFRIIDDTYNANPVSVKNAILTIDSFKDFNKII 346

Query: 387 VFGCGGDRDQGKRPIMGKIAL 407
           V G   +  +  + +  K+  
Sbjct: 347 VLGDMLEMGEYSKALHEKVGA 367


>gi|326334992|ref|ZP_08201192.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692797|gb|EGD34736.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 445

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 140/363 (38%), Gaps = 39/363 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR        I+AVTG++GK++  S +  + +++GLS   IG    I +        
Sbjct: 93  EFASRYTQ---AKIIAVTGSNGKTTTTSLLYHLLEQAGLS---IGVGGNIGN-------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++ +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 139 --------SFARMVAQEPKEYYVLEISSFQLDD--ISSFRPHIALLLNITPDHLDRYNYQ 188

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+  E   +    I  ADD   +E + +  +   + +    + K       
Sbjct: 189 FQNYIDAKFRI-TEFQSQADFLIYDADDPVLQEELAKRKDIKAQCIPFSLE-KSNEQGAY 246

Query: 283 CAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           C       +TI+    +       + G+  + N + A+     + I +  + + L     
Sbjct: 247 CLDDKLFHITINQNKFEMSIRELTIKGKHNLKNVMGASVAAKLLNIRNENIRKSLMTFQG 306

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R EFV        I    A   NS+      + ++  G I +V   G D+     P+
Sbjct: 307 VPHRLEFVKEVGEVRYINDSKATNVNSV---YYALDSMPDGLIWIV--GGQDKGNDYNPL 361

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  ++  +  I  +  DN      +KI       +P  IE  +  +A++ +  +  + D 
Sbjct: 362 IPYVSQKVKAIVCLGLDN------QKIIQTFQSIVPTIIETHSMEDAVQVSRGLSEEGDT 415

Query: 462 LVV 464
           +++
Sbjct: 416 VLL 418


>gi|304310319|ref|YP_003809917.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
 gi|301796052|emb|CBL44256.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
          Length = 480

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 136/426 (31%), Gaps = 46/426 (10%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            I  A     G + IVVS+A    +          I VV    + L       YG     
Sbjct: 68  HIGHAAKNVDGTDVIVVSTAIDSANPELDAARERRIPVVPRA-EMLGELMRYRYG----- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  I    G       PT  I                    ++ 
Sbjct: 122 -IAVAGTHGKTTTTSLIASILAEGGSD-----PTFVIGGRLNSAGTNAKLGTGRF-LVAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + +                ++ +    TN+  DH+  +             F  
Sbjct: 175 ADESDASFL---------------HLQPMVSVVTNIDFDHMSTYNGDFNRLKETFLRFLH 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    A++  DD   +E++ +          + ++     +             +  +
Sbjct: 220 NLPFYGLAVLCVDDPTIREILPQISRPVV-TYGIDHEADIQAVDIQNVGLQSTYRVLRRD 278

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
            +       +PG   V N+L A  +     I    +   LEK   V  RF+  G     G
Sbjct: 279 AESLSITLNIPGRHNVLNSLAAIAVASDENIAGDAIARALEKFQGVGRRFQIQGEIPIMG 338

Query: 356 GRI--YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G +    DY H    +   +  +R +  S R+++++                  L   D+
Sbjct: 339 GTVTLVDDYGHHPREVAATIAAVRQSWPSRRLVMIYQPHRYSRTRDLYEDFVQVLSDVDV 398

Query: 413 AIVTDDNPRSEDP------EKIRAEI-IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            ++ +     E+P        +   I + G   P FIE+ + + ++    + L   DV++
Sbjct: 399 LLLMEVYSAGEEPIAGADSRSLCRSIRMRGAVEPIFIEEPSVLPSVLE--KHLLNGDVVL 456

Query: 464 VAGKGH 469
             G G+
Sbjct: 457 TQGAGN 462


>gi|86608391|ref|YP_477153.1| cyanophycin synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556933|gb|ABD01890.1| cyanophycin synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 898

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 126/360 (35%), Gaps = 36/360 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +  G     +G T+T   + Q++++          A   L    V    +E + 
Sbjct: 502 LIAHILKGIGKR---VGFTTTDGVYIQNHQIAKGDMTGPHSARLVLRDPTVEVAVLETAR 558

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   +   G   N+  DH+     +T +     K  L E  + +   A++ AD
Sbjct: 559 GGILREGLGFPECDIGVVLNVTSDHLGLGDIETLEDMARVKSVLVEA-VHERGYAVLNAD 617

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEGKDFDF- 302
           D     V   A N    V       +   ++K      + A++ +  ++I   G      
Sbjct: 618 DGL---VAAMAANVKATVAYFSMNPENPLIQKHIASGGIAAVYEEGHISILKRGWKLRIE 674

Query: 303 -------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGT 351
                         F + N L A       G+    +   L          PGR      
Sbjct: 675 DVTKIPLTLSGKASFMIQNVLAATLAAFLHGVSIDDIRMALGTFTSSVAQTPGRLNLFDV 734

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G ++ VDYAH     E I   +      R I V G  GDR       +G +A  + D
Sbjct: 735 G--GYQVLVDYAHNPAGYEAIQSTLERWDCQRKIGVIGGPGDRRNSDLRELGVLAARMFD 792

Query: 412 IAIV-TDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AIV  DD+ R  +P ++ A I  G           E  +   AI TA+E     D++V+
Sbjct: 793 RAIVKEDDDRRGREPGEVAALIRQGWEQEKAGDRLQEILDEATAIETALEKAEPGDLVVI 852


>gi|192359638|ref|YP_001983384.1| UDP-N-acetylmuramate--L-alanine ligase [Cellvibrio japonicus
           Ueda107]
 gi|190685803|gb|ACE83481.1| UDP-N-acetylmuramate--alanine ligase [Cellvibrio japonicus Ueda107]
          Length = 474

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 162/474 (34%), Gaps = 67/474 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+NQ   + +   + K + V+   R +Q G  IF+        GH      + QGA+ +V
Sbjct: 36  LLNQ--GYEISGSDIKASSVTE--RLVQKGARIFI--------GHD--ASNV-QGADVVV 80

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
            SSA +  +          I VV    + L       +G      +AV GT GK++  S 
Sbjct: 81  NSSAVNNTNPEVVGARELRIPVVRRA-EMLGELMRYRHG------IAVAGTHGKTTTTSL 133

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I   +      + PT  I                +    +     G  ++  EA   
Sbjct: 134 LASILAAA-----DLDPTFIIGG-------------LVNSTGTNAQLGGSRYLVAEADES 175

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                    ++ +    TN+  DH++ +    +        F   LP    A++  +D  
Sbjct: 176 DAS---FLHLQPMVAIVTNIDADHMETYGGDFSRLKKTFVEFLHNLPFYGLAVVCGEDPV 232

Query: 253 SKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGE 309
            ++++    +    +L+ G+ +        +       +  +   G  +       +PG 
Sbjct: 233 IRDII---PDVARPILTYGFNEHCDFRATNIRQDKMSSEFDVLRPGNPEPLHIRLNIPGI 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTS 366
             V NA     +    GI  + +   L     V  RF+  G          +  DY H  
Sbjct: 290 HNVLNATAVIAVATDEGISDSAIQAGLANFQGVGRRFQVYGNFPVGDGSTMLVDDYGHHP 349

Query: 367 NSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +  ++K +R      R+++V+                  L   D  ++ +     E+P
Sbjct: 350 REVAAVIKAVRDGWPERRLVMVYQPHRFTRTRDLYEDFVEVLSTVDALVMLEVYSAGEEP 409

Query: 426 ------EKIRAEI-IHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGH 469
                   +   I   G+  P F+E  +   + I+   +++   D+++  G G+
Sbjct: 410 IPGADSRHLCRSIRARGVIEPVFVETVDGVPDVIK---DLVRAGDIVITQGAGN 460


>gi|332652745|ref|ZP_08418490.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
 gi|332517891|gb|EGJ47494.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
          Length = 464

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 143/407 (35%), Gaps = 35/407 (8%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ ++ ++A    +          I V +  + + ++       +H +N L V GT G
Sbjct: 78  QGADCVIRTAAVHDDNPEIAAARAAGIPVFERAQAWGAIM------RHYQNALCVAGTHG 131

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    I   +      +     + +    +R+     I L               
Sbjct: 132 KTTTTSMCTHIF-LAAQRDPTVMIGGVLPALGAGHRVGKGDTIILESC------------ 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E  +  L                N+  DH+D+ +  +   ++  R F +L+P+    +
Sbjct: 179 --EYCNSFLSFF------PTVAVILNVDADHLDFFKDLEDVKHS-FRRFAQLVPQGGCVV 229

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
              DDA + + +K         L+ G +   IH   +          +  +GK       
Sbjct: 230 ADGDDANTMDALKDLDKPM---LTFGLEQGDIHAANLTWNKGLPTFDLIYKGKTLGSISL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NAL AAG  + + +    + E L        RFE  G    G  +Y DYAH
Sbjct: 287 RVPGIHNVRNALAAAGAALQLNVPVEAIREGLYAFGGAGRRFEHKG-EYHGAVVYDDYAH 345

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
             + L+ +L  ++T+   R+I  F         +        L L D  ++ +     E 
Sbjct: 346 HPHELQALLSTVKTLGYQRVICAFQPHTYTRTKELFDDFVEVLKLPDKVLLAEIFAARET 405

Query: 424 DPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D   I   ++   IP         +      E+    D+L+  G G 
Sbjct: 406 DTLGISSKDLADRIPNAEFCPTLEDVTARFKELAQPGDLLITVGAGD 452


>gi|227822650|ref|YP_002826622.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
 gi|254766017|sp|C3MEM8|MURC_RHISN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|227341651|gb|ACP25869.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
          Length = 469

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 135/420 (32%), Gaps = 47/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKDNPELIAAREKFLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVAALLDAGGLDPTVING-GIINAYGTNARMGAGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVLC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ +  +   +V++ G      +    V          + +  +        
Sbjct: 218 LDHPEVQSMVGKIEDR--KVITYGENPQADVRYHNVRMDGATSVFDVEIRRRRTGQVIQL 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   V NA  A  +   +G++   + + L     V  RF   G    G  I+
Sbjct: 276 NGLRLPMPGRHNVSNATAAVAVAQRLGMEPEAIAKGLASFGGVKRRFTLTG-EWNGASIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L+  R    GRI+ V                    + AD  ++    
Sbjct: 335 DDYGHHPVEIKAVLRAAREACQGRIVAVHQPHRYSRLSSLFEDFSACFNDADTILIAPVY 394

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGHETV 472
              ED       + +   I        +     EA+   +  +    D +V+ G G  T 
Sbjct: 395 AAGEDAIDGVNSQALVNSIKAAGHRDAQFLTGPEALAPVVSKIAQPGDFVVLLGAGSITY 454


>gi|190572802|ref|YP_001970647.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia K279a]
 gi|229620424|sp|B2FNN8|MURC_STRMK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190010724|emb|CAQ44333.1| putative UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas
           maltophilia K279a]
          Length = 478

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 145/419 (34%), Gaps = 49/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLTAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMSIITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE-GKDFDFLF 304
             DD    EV   A      V+S G      +  + V    ++ + T+ +  G   + + 
Sbjct: 226 CIDDP---EVAALAARTPRHVMSYGMSPQADVRAENVVQEGSRMRFTLRLPQGTSQEVVL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LE    V  RF  +G     +    RI  
Sbjct: 283 ALPGRHNVLNALAAAAVGWQLGVAPDAIARALEGFAGVGRRFNDLGEVTTASGAKVRIID 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H  + LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPSELEAVFAAARGGWADKRLVVAFQPHRYSRTRDQFDKFAAVLSSVDALVLSEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKGH 469
           P  E+P  I     H +   I    R E   +  A E+           D+L++ G G 
Sbjct: 403 PAGEEP--IAGADSHALARAIRARGRSEPVVVGKAAELASVLPDVLQDGDLLLMMGAGD 459


>gi|319944703|ref|ZP_08018967.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741952|gb|EFV94375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 679

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 133/303 (43%), Gaps = 30/303 (9%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVL----SVGYQG 274
            Q       A++R F EL  +    +  A D   S+ V+     +  + L     VG   
Sbjct: 366 FQAMDDDARARLRRFYELAMRCDEVLELALDRDSSQHVLMMFPGSVVKTLLQLPEVGADP 425

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                        +Q++              + G F + NAL AAG   ++G +   ++E
Sbjct: 426 VASSGGAGSVHGRQQRLQAMFRNVA-TLRLNVLGRFNMENALAAAGAWRSLGWNFPAIVE 484

Query: 335 HLEKLHVVPGRFEFVGTNSR------------------GGRIYVDYAHTSNSLEMILKNI 376
            L +LH VPGR E VG  +                      + VDYAHT ++L  +L  +
Sbjct: 485 GLHQLHPVPGRMEIVGLPAAQVSDAGEAAPAAAISSTACPLVVVDYAHTPDALTNVLAAL 544

Query: 377 RTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R I     G++  VFG GG+RD+GKRP M +    +AD  +VT DNPR EDP +I A++ 
Sbjct: 545 RDIAGQRGGQLCCVFGAGGNRDRGKRPEMARAVEAVADRVVVTSDNPRDEDPAQIIADVC 604

Query: 434 HGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            G+  P +  + +R  AI  AI      DV+++AGKG ET   +  G      D +   +
Sbjct: 605 QGLSKPAWRTEADRRVAIDAAIAQAAPADVVLIAGKGRETTQEIA-GVFHPFSDPEFAAQ 663

Query: 492 ILG 494
            L 
Sbjct: 664 ALA 666



 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 115/321 (35%), Gaps = 84/321 (26%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIP-------------------QAIAQGAEAIVV 73
           + SDSR +  G  F A+ G ++DG  FI                    QA    AE  VV
Sbjct: 31  LVSDSRRVGKGDAFFALHGRRQDGSTFIAQAVQQGAAAVVVAIPAQACQA-EDAAEGDVV 89

Query: 74  SSAYSL-------QDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
            + ++        ++          P+  V      L   A   Y    +  +++AVTGT
Sbjct: 90  QAEHAACGNFDYFKNLPTLPAGIQVPVCYVPCLGSQLGALADEYYDHPSQVLDVVAVTGT 149

Query: 124 SGKSSVASFVQQ----ICQRSGLSSF---------------------------------- 145
           +GK+S   ++ Q       R+G +                                    
Sbjct: 150 NGKTSTTHWIAQGVNDRLARTGDAQAVDANTPSRPAASASTQRPAEFAGLVIALDGDADA 209

Query: 146 ----------QIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS---SQGVTHVSVEASS 191
                      IG     +    +   LTTP P+ L              V  V++EASS
Sbjct: 210 AMQPGRGRGVVIGTNGVGTPGALEYIGLTTPDPLTLQTLFQRFRADTEAPVGVVAMEASS 269

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            GL Q R+ G  +    FTNL RDH+DYH + QAY  AK+ LF    P    A++   D 
Sbjct: 270 IGLVQGRMQGTCIHTAVFTNLTRDHLDYHGSMQAYGAAKVGLFS--WPTLQAAVVNLGDP 327

Query: 252 YSKEVMKRAHNAGCRVLSVGY 272
            + E+++  H        +GY
Sbjct: 328 LATEIIEVLHRHTAAPRIIGY 348


>gi|269215876|ref|ZP_06159730.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
 gi|269130826|gb|EEZ61902.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
          Length = 463

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 140/433 (32%), Gaps = 44/433 (10%)

Query: 58  LFIPQAIAQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
            +  Q +A G    V      V  A  +   S  +    P ++            + +  
Sbjct: 43  AYTDQLVAAGIRVFVGHDAANVDPACDVVVASTAVPDTNPEVMRARELGIPVWQRAHMLA 102

Query: 112 KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +       LA  GT GK++ +S +       GL    I     + ++  + +  T     
Sbjct: 103 ELGRGKKTLAAAGTHGKTTTSSMLAGAVDALGLDPTFI-VGGMVDAYRTNAKSGTGD--- 158

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                         +  VEA            +       TN+  DH+D++        A
Sbjct: 159 --------------YYVVEADESDGS---FLNLSPYVALVTNVEADHLDHYVGGIDEIRA 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNK 288
             + F   +P +   ++  +D    E+   A + G RV+S G+     + +         
Sbjct: 202 TFKTFMASVPADGALVVCGEDPSLAEL---AESTGRRVVSYGFSPACDVRVSDYATHGVS 258

Query: 289 QQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              T+S          L   PG     NA    G+  A+G+D A     +     V  RF
Sbjct: 259 STFTLSFPDGTVVESGLAKNPGRHNALNAAGVLGVIWALGLDVASASAGIASYSGVRRRF 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  G  + G  +  DYAH    +   L    ++   R+ V+F                 A
Sbjct: 319 DLKGEAA-GVAVVDDYAHHPTEIAATLAAATSLDFNRVHVIFQPHRYSRTASLADEFGPA 377

Query: 407 LDLADIAIVTDDNPRSEDP-----EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNK 458
               D   V       EDP      ++ A+ +     +       +  EAIR+ ++   +
Sbjct: 378 FAGVDSLTVLGVYAAGEDPIEGVSGRLVADSVRACGSVSDVSYIEDFDEAIRSVVDRARE 437

Query: 459 QDVLVVAGKGHET 471
            D+++  G G  T
Sbjct: 438 GDLVITMGAGSVT 450


>gi|229830143|ref|ZP_04456212.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
 gi|229791441|gb|EEP27555.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
          Length = 458

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 129/424 (30%), Gaps = 51/424 (12%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAVTGTSG 125
            A  V+       ++A I  + P  +  +  K   L  ++L G+   H    +A+ GT G
Sbjct: 62  SAANVTDDIDCFVYTAAISPDNPEWIAASASKKPMLTRAQLLGQIMSHYPESIAIAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +   S            I      N     S  ++A+A  Y +S    + 
Sbjct: 122 KTTSTSMMSMLLLESDQKPTI--SVGGILDAIHSNVHVGNSDRFVAEACEYTNSFLEFY- 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                    N+  +H+D+ +       +  R F E    +   +
Sbjct: 179 ------------------PKYSVILNIEAEHLDFFKDLDDIRRSFKR-FAENTADKGLLV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLF 304
           I  +    + ++    +   +         +   +                 +       
Sbjct: 220 INGEINDWQSLVADVKS-DVQTYGFDDSCDWYPSQISYDHFGCASFIPHFRQQTLPLIRL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   + NAL    +   +G+    + E   K H    RF++ G    G  +  DYAH
Sbjct: 279 HVPGRHNIGNALSVLAVAHRMGLSEEEIREGFAKFHGADRRFQYKG-KFHGATVIDDYAH 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               +   L   +     RI+VVF                 AL  AD  I+ D     E 
Sbjct: 338 HPTEIRASLAAAKNYPHKRIVVVFQPHTYTRTKAFLEDFADALSAADQVILADIYAARE- 396

Query: 425 PEKIRA----EIIH----------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            + I      +I              P F E  +         +     D+L+  G G+ 
Sbjct: 397 -QDIYGVSSLDIKKRLDAAGVDCLYFPSFEEIED------YLKKNSIDGDLLITMGAGN- 448

Query: 471 TVHI 474
            V I
Sbjct: 449 VVQI 452


>gi|328952329|ref|YP_004369663.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452653|gb|AEB08482.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 477

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 136/409 (33%), Gaps = 44/409 (10%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVA 130
              +   S+ I  + P L     R         + A  + GK     +A+ G  GK++  
Sbjct: 64  ESEVVVISSAIGLDNPELKAAQARGLQILSRAQMLAMLMAGK---TQIAIAGAHGKTTTT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S    + ++ GL+   +     I      N +  P   ++A+A     S  V        
Sbjct: 121 SMTASVLRQGGLAPSVV--IGGIVDSLGGNAVLGPGDYFVAEADESDGSFLVF------- 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+ R+H+D+++          +   ++ P  +    Y DD
Sbjct: 172 ------------NPHVAVVTNVDREHLDHYRDLAHIQEVFAKFIHQVQPGGAVVACY-DD 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              + ++   +    R+++ G + G       +         T+  + K       PL G
Sbjct: 219 PNLRPLL---YGVQGRLITYGLKSGGNYRAAHIQVTGGGSSYTLLRQEKKLGQITIPLAG 275

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V N+L AA +  A+G+D   +   L +   +  RFE  G N +G  +  DY H    
Sbjct: 276 WHYVANSLAAAAVGFALGLDFRDIQAGLAQTGRIKRRFEIKGEN-QGVTVIDDYGHHPTE 334

Query: 369 LEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
           +   L  +    +GR +VV F                     A +  +TD     E    
Sbjct: 335 IRATLDAMAQAFAGRRLVVAFQPHRFSRTQALLPDFFDIFQQAQLLFLTDIYSAGERVIH 394

Query: 426 ----EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 +   I   G       GNR E        L + DVLV  G G 
Sbjct: 395 GLSGRDLYRGIREAGHTAVQYVGNREELAPELWNYLRRGDVLVTMGAGD 443


>gi|194364381|ref|YP_002026991.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia R551-3]
 gi|229620423|sp|B4SJX6|MURC_STRM5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194347185|gb|ACF50308.1| UDP-N-acetylmuramate/alanine ligase [Stenotrophomonas maltophilia
           R551-3]
          Length = 478

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 146/419 (34%), Gaps = 49/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLTAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMSIITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE-GKDFDFLF 304
             DD    EV   A      V+S G      +  + V    ++ + T+ +  G   + + 
Sbjct: 226 CIDDP---EVAALAAKTPRHVMSYGMSPQADVRAENVVQEGSRMRFTLRLPQGTSQEVVL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG+  V NAL AA +   +G+    +   LE    V  RF  +G     +    RI  
Sbjct: 283 ALPGKHNVLNALAAAAVGWQLGVAPDAIARALEGFAGVGRRFNDLGEVTTASGAKVRIID 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H  + LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPSELEAVFAAARGGWADKRLVVAFQPHRYSRTRDQFDKFAAVLSSVDALVLSEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKGH 469
           P  E+P  I     H +   I    R E   +  A E+           D+L++ G G 
Sbjct: 403 PAGEEP--IAGADSHALARAIRARGRSEPVVVGKAAELASVLPDVLQDGDLLLMMGAGD 459


>gi|330446844|ref|ZP_08310495.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491035|dbj|GAA04992.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 487

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 144/417 (34%), Gaps = 44/417 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  +V S+A S ++      +   I VV    + L+      +G      +A+ GT G
Sbjct: 80  QGASVVVASTAISKENPELMAATELRIPVVRRA-EMLAELMRYRHG------IAIAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  +   QI   +GL    +      S+        +         ++       + +
Sbjct: 133 KTTTTALTTQIYSEAGLDPTFVNGGLVKSAGTNARLGCS------RYLIAEADESDASFL 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +             F   LP    A+
Sbjct: 187 ---------------HLQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           +  DD   +E++ R        L+ G+ +   + L        +   T+  +GK + D  
Sbjct: 232 MCIDDPVVRELLPRVGRPM---LTYGFAEDADVRLVNYTQTGQQGHFTVQRKGKPELDIT 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYV 360
             +PG+    NA  A  +    G+D   +L  L +      RF+ +G   T +    +  
Sbjct: 289 LNIPGKHNALNATAAIAVATEEGVDDDAILRALVEFEGTGRRFDHLGEFDTGNGKVMLVD 348

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H  + +++ +K  R      R++++F                  LD  D+ ++ D  
Sbjct: 349 DYGHHPSEVDVTIKAARAGWEDKRLVMIFQPHRYSRTRDLYDDFANVLDQVDVLVMLDVY 408

Query: 420 PRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E P        +   I   G    I    + E       ++   D+++  G G 
Sbjct: 409 AAGEAPIAGADGRALCRTIRSRGKIDPIFVPEKEELPAVLANIIQNDDLVLTQGAGD 465


>gi|209550173|ref|YP_002282090.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535929|gb|ACI55864.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 471

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 141/416 (33%), Gaps = 47/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLEAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ R  +   ++++ G      +  K V     +    + +  +        
Sbjct: 218 LDHPEVQSLVGRIEDR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVIEL 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+
Sbjct: 276 KGLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L+  R    GRII V                    + AD   +    
Sbjct: 335 DDYGHHPVEIKAVLRAAREACKGRIIAVHQPHRHSRLASLFEEFAACFNDADSIFLAPVY 394

Query: 420 PRSEDPEK------IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
              EDP        + + I  G        N  E + +   E+    D +V+ G G
Sbjct: 395 AAGEDPIAGIDSVSLVSRIKSGGHRDARFLNSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|297569450|ref|YP_003690794.1| UDP-N-acetylmuramate/alanine ligase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925365|gb|ADH86175.1| UDP-N-acetylmuramate/alanine ligase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 490

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 146/443 (32%), Gaps = 75/443 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V+SSA    +   T      I V+        L   ++ G      +AV G+ GK
Sbjct: 64  GADVVVISSAVKPDNPEVTAAHEALIPVIPRAEMLAELMRLKING------IAVAGSHGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S    +   +GL      PT  I         +  S   L +    ++    +  S
Sbjct: 118 TSTTSMAGTLLAEAGLD-----PTVVIGG----QVNSFGSNAKLGEGDFLVAEADESDGS 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  +H+D++   +A   A +  F   +P    AI+
Sbjct: 169 FL------------KLSPVLEIVTNIDLEHVDHYHDLEAVKAAFLE-FINRIPFYGAAIL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKD------ 299
             DD     ++        R ++ G      +  +++ +     +  +   G++      
Sbjct: 216 CLDDPNVAALLPLVRK---RTITYGLSSQADVQAREITSRGFVSRFEVWQRGREQATNNG 272

Query: 300 ----------------------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                                       +PG   +YNAL    L + + I   ++   L 
Sbjct: 273 KNCAQDNGMAQDAVSREPLRKLGSVALAVPGRHNIYNALAVIALGLELEIPFPVIARALS 332

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
               V  R E V     G  +  DY H    +   L  +R      R++V+F        
Sbjct: 333 TYSGVQRRLE-VKGEVDGITVVDDYGHHPTEIRATLAAMRQAWPKRRLVVLFQPHRYSRT 391

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKG----NRI 446
                    A   AD+ ++ D     E+P      + +   I       +E      +  
Sbjct: 392 AGLLPDFCTAFHDADLLLLDDIYAAGEEPVAALAGDALARAIRRHGQKEVEYVSGLIDNP 451

Query: 447 EAIRTAIEMLNKQDVLVVAGKGH 469
           EA+   + +L + DV++  G G+
Sbjct: 452 EAV---LPVLKRGDVVLTLGAGN 471


>gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis MSMB43]
          Length = 269

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 101/267 (37%), Gaps = 24/267 (8%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+     +GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVADRGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPMVAVTGSNGKTTV 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +     +    +T  +F  D          L   L  L++     V    
Sbjct: 118 KEMIASIFAAA---VGEPARLATAGNFNNDV--------GLPLTLLRLTAAHRLAVIELG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +H  +   L  I         N  R+H ++  T +A       +   L P +  A+  A
Sbjct: 167 MNHPGETDTLAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           DDAY+     R    G R++     G 
Sbjct: 226 DDAYAGIW--RVAATGNRIVDFALHGA 250


>gi|83816151|ref|YP_444704.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber DSM 13855]
 gi|109892736|sp|Q2S527|MURC_SALRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83757545|gb|ABC45658.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber DSM 13855]
          Length = 475

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 141/418 (33%), Gaps = 54/418 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +   T  +    + +    + L       +G      + V GT GK+
Sbjct: 73  ADVVVYSSAVDPDENPETREAERRRISLIPRAEMLGELIRMKFG------VGVAGTHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    +    G     I     +++F  +                         + +
Sbjct: 127 TTTSMAGLVVAEGGFDPTVI-VGGKVTAFGSNAITGEGD-----------------VLVI 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA  +     RL          T++  DH+D ++   A   A    +   +P    AI+ 
Sbjct: 169 EADEYDRTFLRL---TPSLAVITSIEEDHLDVYEDLAAI-QASFTQYANSVPFFGAAILC 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DD   + ++    +   RV++ G  +   +  + V       +  + V G+        
Sbjct: 225 LDDPNVQAIVG---DVERRVVTYGTTRQAEVRGENVRREGMTTRFDVVVRGERLGTIELH 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL A  +   + I    V + L     V  RFE  G    G  +  DYAH 
Sbjct: 282 VPGMHNVRNALAAVAVGQELEISFERVRDGLGTFTGVRRRFEKKGEVG-GITVLDDYAHH 340

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +E  L          R++ VF                 +   AD+ ++TD     E 
Sbjct: 341 PTEIEATLDAAHQGFPDRRVVAVFQPHMYSRTQNFMDEFACSFFNADMLVLTDVYGAREA 400

Query: 425 P--------EKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P           RAE      +H +P   +   R++      E++   DV+++ G G 
Sbjct: 401 PIEGVTGGRLAERAEQFGHRAVHYVPEKTDLPGRLQ------ELVGPGDVVLMLGAGD 452


>gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes LO28]
          Length = 178

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 21/195 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL         EL+  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLN--------ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASS 191
           +   GV+   +E SS
Sbjct: 164 MLLSGVSTAVMEVSS 178


>gi|94676482|ref|YP_588948.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|166222957|sp|Q1LSW6|MURC_BAUCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94219632|gb|ABF13791.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 490

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 150/424 (35%), Gaps = 59/424 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA S+ +          I ++    + L+      YG      +A+ GT GK+
Sbjct: 79  ANVVVVSSAISIANPEIVAAKKLRIPIITRA-EMLAELMRFRYG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +  + +  I   +GL    +  G   +I  +A+    +          LS+L        
Sbjct: 132 TTTAMLASIYLEAGLDPTIVNGGLIKSIGQYARLGYGSYLIAEADESDLSFLH------- 184

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ I    TN+  DH++ +Q    Y       F   LP     I
Sbjct: 185 ----------------LQPIVTIITNIEADHMENYQGDFNYLKNTFLKFIHKLPFYGKGI 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDF 302
           +  DD   ++++         +++ G+  K    +       +  V+  +  +D      
Sbjct: 229 MCLDDPVIRDLLPHISR---HIITYGFNSKAN-FRLTNYHQKEAHVSFQLYRQDKPTLRI 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG 356
               PG     NA+ A  +    GI    +L+ L +   +  RF+ +G       N + G
Sbjct: 285 ELNSPGRHNALNAVAAIAVATEEGIADKNILQALFRFKGINRRFDKLGCFSLKKINGKNG 344

Query: 357 RI--YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            +    DY H    L+  ++++R      R+++VF                  L   D+ 
Sbjct: 345 VVMLVEDYGHHPTELQATIQSVRIGWPDKRLVMVFQPHRYTRTRDLYEYFVGVLSKVDVL 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR---------TAIEMLNKQDVLVV 464
           ++ D  P  E+P  I       +   I   ++++ I             ++L   D++++
Sbjct: 405 LMLDIYPAGENP--IAGIDSKSLCCTIRNTSKLDPIFIHELNKLPVMLAQLLQDNDLVLM 462

Query: 465 AGKG 468
            G G
Sbjct: 463 QGAG 466


>gi|257456337|ref|ZP_05621534.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446423|gb|EEV21469.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 202

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 312 VYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           +YN L A      + G+    ++  L++L  V GR   V    +   + +DYAHT +S +
Sbjct: 1   MYNILAALIAVHNLTGLPLDELVPLLKRLVPVKGRMCRV-EAGQDFEVIIDYAHTPSSFQ 59

Query: 371 MILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +I+  +R       GR+I VFG GG+RD  KRP  G+IA +  D  I+TD++PR EDP +
Sbjct: 60  LIMPPVRERIKAKGGRVIAVFGSGGERDTVKRPEQGRIAAEYCDTIILTDEDPRGEDPVE 119

Query: 428 IRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           +   I  G P            +R  AIR A  +    D +++ GKGHE   I  +G   
Sbjct: 120 LLEMIAEGCPDKKRGEELFIIPDRPTAIRKAFSLAQANDAVLLLGKGHENSIIGKDGAVP 179

Query: 482 M 482
            
Sbjct: 180 Y 180


>gi|156973222|ref|YP_001444129.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi ATCC
           BAA-1116]
 gi|166224748|sp|A7MXR2|MURC_VIBHB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156524816|gb|ABU69902.1| hypothetical protein VIBHAR_00903 [Vibrio harveyi ATCC BAA-1116]
          Length = 485

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 156/448 (34%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVMAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGK 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+ +  
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSEDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  EG+ + D    +PG     NA  A  +     I    +L+
Sbjct: 260 DVRIEDYHQEGQQGKFTVVREGRANLDITLNIPGRHNALNASAAIAVATEDDISDEAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +   R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTIHAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                           L+  D+ I+ D     E P  I       +   I    +++ I 
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAAGEKP--IAGADGRALCRTIRSRGKVDPIF 437

Query: 451 T-AIEML--------NKQDVLVVAGKGH 469
              IE L           D+++  G G 
Sbjct: 438 VPEIEQLPSVLANVIQDGDLILTQGAGD 465


>gi|158316859|ref|YP_001509367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158112264|gb|ABW14461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 492

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 150/470 (31%), Gaps = 44/470 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+            +R   +  V  DSR +  G +FVA+ G + DGH F    
Sbjct: 1   MIALTLAEVAAATGGRLTAGADRLAPVTSVVIDSRQVGPGALFVALPGERVDGHDFAA-- 58

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
                     + A           +  P  VV +    L+  A+ L    P  ++ VTG+
Sbjct: 59  ---------GAVAAGAVAVLGARETGVPT-VVADPAAALAALAAHLRDLAPATVVGVTGS 108

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +  R G +   +G  +           T P   ++             
Sbjct: 109 AGKTTTKDLLADLLGRLGPTVAAVGSFNNEIGLPLTLLRTEPDTAFV------------- 155

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKES 242
            + + A   G         +   G   N+G  H+  +   +     AK  L E       
Sbjct: 156 VLEMGARGIGHIATLCAVARPHVGLVLNVGSAHVGEYADGRNGIAAAKGELAEA---ATG 212

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDF 300
             ++ ADD     +  RA   G +V++ G         +   +    +    +   G+  
Sbjct: 213 LVVLNADDPLVAAMAGRA---GAQVVTFGRAAAADVRAERVEVGGDGRAAFDLLAGGERH 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G  QV NAL AA +  ++G+  A     LE+          V T   G  +  
Sbjct: 270 RLRLGLVGAHQVANALAAAAVATSLGLAPAEAAAALEEARPRSRWRMEVTTTPDGVVVLN 329

Query: 361 D-YAHTSNSLEMILKNIRTITS-GRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAI 414
           D Y     S+   L  +  +   GR   V G     G D D     +    A       +
Sbjct: 330 DSYNANPESMRAALTALMDMRGAGRAWAVLGPMGELGADADAAHDTLGRLAAGLGVSRLV 389

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 R             G   ++   +  EA+      +   DV++V
Sbjct: 390 AVGAGARRVHQAAEHEGAWAGESTWVPGVD--EAVALLAAQVRPGDVVLV 437


>gi|315652426|ref|ZP_07905414.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
 gi|315485325|gb|EFU75719.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
          Length = 437

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 136/408 (33%), Gaps = 37/408 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSV 129
           +S    L  ++A I  + P  +    +    +  ++L G         +A++GT GK++ 
Sbjct: 45  ISDDIDLFVYTAAIHKDNPEFIKAKEKNIKVMTRAQLLGYVMSKFKESIAISGTHGKTTT 104

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I   + L    I     +     +  +                   VT      
Sbjct: 105 TSMLSYILLDTNLDP-TISVGGIVKKIRGNVYIGNGDTF-------------VTEACEYT 150

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +S          +    G   N+  DH+D+ +      ++  + F +   +E   II   
Sbjct: 151 NSFLE-------LYPTVGVILNIEEDHLDFFKDLDDIRDS-FKKFVKNTSREGCIIINDK 202

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF-DFLFPLP 307
              ++E+          V+  G +    +   +           +  + + + D    + 
Sbjct: 203 IKNNREI---TMGYEGNVVRYGTENSDCYAANIRYDAIGYPTFDLVHKEETYEDVKLCVG 259

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   +YNAL A  +   +G+    +   L +   V  RFE  G    G  I  DYAH  +
Sbjct: 260 GNHNIYNALAAVCVAFELGVGIEDIRRGLLEFKGVDRRFEIKG-KLDGITIVDDYAHHPS 318

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
            +   L   +     R++VVF                  L   +  I+    P  E    
Sbjct: 319 EISATLNIAKRYPHDRLVVVFQPHTYTRTKALFEDFANVLKNVEQVIIAKIYPARETDNL 378

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
                + ++ I+ + G     +  + I    +E L+K D+L+  G G 
Sbjct: 379 GVSSHLLSDRINELGGNATSFDTFDEIENYLLEDLHKGDLLITMGAGD 426


>gi|322436296|ref|YP_004218508.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
 gi|321164023|gb|ADW69728.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
          Length = 463

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 141/410 (34%), Gaps = 44/410 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV+S+   +D    + +    + V    + L+      YG      +AV G  GK++  
Sbjct: 74  VVVTSSAVSKDNPEVLEARARKIPVIQRAEMLAELMRLKYG------IAVAGMHGKTTTT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +    GL      PT  +            S   L  +   ++    +  S    
Sbjct: 128 SMIAAVLAGGGLD-----PTVVVGG----RVDALGSNARLGTSQYLVAEADESDRSFL-- 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +  I    TNL R+H D + T      A ++ F + LP         D+
Sbjct: 177 ----------KLSPILAVVTNLDREHTDCYPTMDDVDAAFLQ-FMDALPFYGATTACIDN 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLP 307
              + ++ R      +V + G         ++    +  + T  V  +      F   +P
Sbjct: 226 ERLRGILPRVRR---KVYTYGESHDADFRLEMLPGVDGVRSTFEVNYRGLLLGPFELHVP 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NA  A  + + +GID A + + L     V  RF+  GT   G  +  DY H   
Sbjct: 283 GRHNVLNATAAIAVGVQLGIDPASIAKGLATFRGVDRRFQLKGTVG-GIAVVDDYGHHPT 341

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
            +   LK  R    GR++VVF      R +   P       D   I I+ D    SE P 
Sbjct: 342 EITATLKAARDCGYGRVLVVFQPHRYTRTRDLMPEFAAAFGDADAIQIL-DIYAASEQPI 400

Query: 426 -----EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E +  +I     G      +   AI          DV++  G G+
Sbjct: 401 PGITGEALAQQIAQQTDGRATYAPSVAAAIAALTAQARPGDVIMTLGAGN 450


>gi|304314889|ref|YP_003850036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588348|gb|ADL58723.1| predicted UDP-N-acetylmuramyl tripeptide synthase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 469

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 157/432 (36%), Gaps = 51/432 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENI 117
           I  A  +G  AI+     S     A+   + PI++VD      +L  S    +       
Sbjct: 47  IQIASERGVAAIITQDLRS----DASKVLDVPIILVDRIEIANALALSWTINRFASSSRR 102

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GKS+    +  I   +G SS+    T+T S    +  +    P+         
Sbjct: 103 IAVTGTNGKSTTTHMINHIITTAGRSSY----TNTDSRSEFNTLI---DPVVAQHIAEAA 155

Query: 178 SSQGVTHVSVEASSHGLDQHRL---------DGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           S + +  + +E S       R+           I+      TN+  DHI   ++    F 
Sbjct: 156 SREQLEFMVIEVSEVQGWLGRVMRDHAQLMTSAIQPEMVVITNVAMDHIGLVESVDDVFR 215

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                   +      A++ +DD   + +     N   R +  G  G   +      IH  
Sbjct: 216 EVSGALRAM--DSGVAVLNSDDERVRAMADI--NPLLRTVFYGSHGPVRYTG--NGIHCG 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             + I  +        P  GE  + N L A    + +G     V   +E    +  RF  
Sbjct: 270 DDLIIQTD------ELPFTGEHFIQNTLAAITAALELGFSYEDVRRGVETYRALKRRFTH 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-AL 407
           +  N R   +  D+AH  + +   +++      GR+ VV    G R +    +  +  A 
Sbjct: 324 LMDNPR---VIDDFAHNPDGIRATVRSAACDLKGRLWVVNAIRGSRGEDINIMNAEALAE 380

Query: 408 DLADI---AIVTD-------DNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEM 455
            L D+    IVT         N   E+  ++   ++  +GI G+    N  +A+R  +E 
Sbjct: 381 SLKDLDVELIVTSSSDLVDEQNRVLENERRVFLHVLDENGI-GYTHIENLRDALRRVLEN 439

Query: 456 LNKQDVLVVAGK 467
               D +++ G 
Sbjct: 440 AEPSDTVLLLGA 451


>gi|291522020|emb|CBK80313.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus catus GD/7]
          Length = 458

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 147/424 (34%), Gaps = 50/424 (11%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAV 120
           IA G  A  ++    +  ++A I  + P      +     +  + L G+   +  N +AV
Sbjct: 57  IAYGQRAENITPDIDVVVYTAAIHPDNPEFAAAKSAGLPMMDRAELLGQIMTNYTNAIAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +GT GK++  S +  I   +  +   I     + +   + R+      ++ +A  Y +S 
Sbjct: 117 SGTHGKTTTTSMLSHIL-LAADTDPTISVGGILKAIHGNIRVGHSD-NFITEACEYTNSF 174

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              + S+E                      N+  DH+D+ +      ++  R F E L  
Sbjct: 175 LKFNPSLE-------------------IILNIEEDHLDFFKDINDIRHS-FRKFAEKLDA 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGK 298
           +   +I  + ++  E+        C +++ G + +  +  +        K    +   GK
Sbjct: 215 DDILVINGEISHVSEI---TDGLPCHIITYGLKPECDYAAENITFDEFAKGSFDLIAYGK 271

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             D     + G   V NAL A      + I   ++ + L        RFE+ G    G  
Sbjct: 272 KIDHIQLNVAGIHNVSNALAAIASARELHIPMDIIKKGLMAFEGTDRRFEYKG-QFNGVT 330

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +  DYAH    ++  L   +     +I  VF                 AL LAD  ++ D
Sbjct: 331 VIDDYAHHPTEIKATLTAAQKYPHRQIWCVFQPHTYTRTKAFFHEFADALSLADKIVLAD 390

Query: 418 DNPRSE-DPEKIRA-EIIH----------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                E DP  I + +I              P F E        +   E     D+L+  
Sbjct: 391 IYAARETDPGDIHSRDIQKLLLEKGKEAYYFPSFEEIE------KFLREKCINGDLLITM 444

Query: 466 GKGH 469
           G G 
Sbjct: 445 GAGD 448


>gi|94312058|ref|YP_585268.1| UDP-N-acetylmuramate--L-alanine ligase [Cupriavidus metallidurans
           CH34]
 gi|166224718|sp|Q1LIM7|MURC_RALME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93355910|gb|ABF09999.1| UDP-N-acetylmuramate:L-alanine ligase [Cupriavidus metallidurans
           CH34]
          Length = 471

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 142/445 (31%), Gaps = 68/445 (15%)

Query: 51  GNKE-DGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G +   GH           GA A+VVS+A +  +          I VV      L+    
Sbjct: 50  GARVAHGHD-----AENVTGANAVVVSTAVTNDNPEVLAARARRIPVVPRAVM-LAELMR 103

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
              G      +A+ GT GK++  S V  +    GL    +     ++S   + RL T   
Sbjct: 104 LKQG------VAIAGTHGKTTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD- 155

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 ++       + ++               +  +    TN+  DH+D +    A  
Sbjct: 156 ----FIVAEADESDASFLN---------------LFPVMEVITNIDADHMDTYGHDFARL 196

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIH 286
                 F + LP    A++  DD   +E++         V+  G+            A+ 
Sbjct: 197 KQAFVEFTQRLPFYGIAVLCVDDPNVREILPFVSKP---VVRYGFAEDAQIRAVNARAVD 253

Query: 287 NKQQVTI-----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            +   T+            D +  LPG   V NAL A  +   + +  A +++ L + H 
Sbjct: 254 GQMHFTVLRQLNGHAEPPLDIVLNLPGIHNVQNALAAIAIATELEVPDASIVKALREFHG 313

Query: 342 VPGRFEFVGT-----NSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRD 395
           V  RF+  G       S    +  DY H    +   +          R+++ F       
Sbjct: 314 VGRRFQRYGEVATPDGSGTFTLVDDYGHHPVEMAATLAAARGAFPDRRLVLAFQPHRFTR 373

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI------------EKG 443
                      L   D  ++ +     E P  I A     +   +            +  
Sbjct: 374 TRDCFEDFVKVLGTVDALLLAEVYAAGESP--IVAADGRALTRALRVANKVEPVFVEQIE 431

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  +AI  A+      DV+V  G G
Sbjct: 432 DMPQAILNAV---RPGDVVVTMGAG 453


>gi|2959999|emb|CAA76495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni]
          Length = 350

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 140/347 (40%), Gaps = 57/347 (16%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+  GA+ I V+    L +    I                              
Sbjct: 54  AKFHAQALEGGAKIIDVNECKKLLEIDEKI-----------------------------Q 84

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--PIYLAKAL 174
           I+ +TGT+GK++ A+ +  I    G      G   T  +F  D ++   S     + K L
Sbjct: 85  IIGITGTNGKTTTAAAIYSILLDLGYKC---GLCGTRGAFINDEQIDEKSLTTSPILKTL 141

Query: 175 SYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            YL   + +      +  SSH L  +R +G+   A  FTN+ +DH+D+  T   Y  AK 
Sbjct: 142 EYLLIATPKKCDFFIMGVSSHALVPNRSEGLNFAAKIFTNITQDHLDFRGTFGNYKEAKE 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F +    ES   I  D    K  ++ A        + G +   ++  K  ++      
Sbjct: 202 LFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGIST 250

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ + + F    PL G F +YN LVA+     +   D   + + +     V GR E V 
Sbjct: 251 IVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVA 310

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                  + VD+AHT + +E +L     + + ++IVVFG GGDRD+ 
Sbjct: 311 KG-----VIVDFAHTPDGIEKVLDT---LKNKKLIVVFGAGGDRDKT 349


>gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922]
 gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922]
          Length = 824

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 152/411 (36%), Gaps = 29/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHL 58
           MK +     +  EL   L+   +  +E+ I E   D+R I      +F+ + G ++ G  
Sbjct: 1   MKTK--TNYNLGELAQILNAKLIGDKEQTIEEYYFDTRTIVCPTNGLFITLKGLQKSGAY 58

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A  +G  + +VSS        A  +     L+V +    L + A     +    + 
Sbjct: 59  YLDEAYQKGIRSFLVSS------IPAQPKDGANYLLVQDVLVALQMLAKHHRQRFTLPLF 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK+ V  ++ Q+      + + I      S  + +++L  P  + L    + L 
Sbjct: 113 GITGSNGKTVVKEWLYQLL----WNEYNI----ARSPKSYNSQLGVPFSVLLIDEHNDLG 164

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                      S     Q     ++      TN+G  H++    +++    K     +LL
Sbjct: 165 IFEA-----GVSQPNEMQALRCILQPTTAILTNIGSAHLENFLDRRSLALEK----IQLL 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
                 I  ADD   +E++         R ++ G   K    LK+   I+ +  + I + 
Sbjct: 216 EAAQEIIYPADDELIEELISSNPVFDSKRRITFGKSDKATVQLKQYQTINGQSSIDIEIS 275

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  F+ + P   +  + NAL+      ++  +        EKL  +  R E     +   
Sbjct: 276 GVLFNIIIPFTDQASIQNALICCASIYSLNKNLNDYKSKFEKLLPIEMRLEIKEAINNSI 335

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            I   +     SL+  L  +   +  R ++V           + +  K A 
Sbjct: 336 LINDAFNSDLISLKNALDTLAQQSRERKVLVLTDILQSKLADKELYQKTAE 386


>gi|254525136|ref|ZP_05137191.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
 gi|219722727|gb|EED41252.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
          Length = 478

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 146/419 (34%), Gaps = 49/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I ++      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPIMPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLTAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   A    F + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMSIITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE-GKDFDFLF 304
             DD    EV   A      V+S G      +  + V    ++ + T+ +  G   + + 
Sbjct: 226 CIDDP---EVAALAAKTPRHVMSYGMSPQADVRAENVVQEGSRMRFTLRLPQGTSQEVVL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG+  V NAL AA +   +G+    +   LE    V  RF  +G     +    RI  
Sbjct: 283 ALPGKHNVLNALAAAAVGWQLGVAPDAIARALEGFAGVGRRFNDLGEVTTASGAKVRIID 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H  + LE +    R      R++V F          +       L   D  ++++  
Sbjct: 343 DYGHHPSELEAVFAAARGGWADKRLVVAFQPHRYSRTRDQFDKFAAVLSSVDALVLSEVY 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKGH 469
           P  E+P  I     H +   I    R E   +  A E+           D+L++ G G 
Sbjct: 403 PAGEEP--IAGADSHALARAIRARGRSEPVVVGKAAELASVLPDVLQDGDLLLMMGAGD 459


>gi|115524116|ref|YP_781027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518063|gb|ABJ06047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 480

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/394 (18%), Positives = 136/394 (34%), Gaps = 28/394 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S DSR +  G  + AI G   DGH F+  A          + A   ++      ++  
Sbjct: 30  GLSIDSRTLTPGDAYFAIKGEAHDGHAFVAAA-----LEAGAAVAVVAREQRDQFAADAR 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L+VD+  + L   A     +    ++AVTG+ GK+S    ++ +    G +   +   +
Sbjct: 85  LLIVDDVLEALRDLARAARARLEGQVIAVTGSVGKTSTKEALRAVFAAQGETHASVASFN 144

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                         S  +                 +  +  G  +  +  ++      T 
Sbjct: 145 NHWGVPLSLARCPASARF-------------AVFEIGMNHAGEIEPLVGLVRPHVAIITT 191

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSV 270
           +   H+++    +A  +AK  +F  L       ++  D+A    + + A   G  R++S 
Sbjct: 192 VEPVHLEFFDGIEAIADAKAEIFAGL-ESGGAVVLNRDNAQFTRLAECAEARGIKRIVSF 250

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G  G+    L  +    +   +   + G+   +   +PG  Q  N+L         G D 
Sbjct: 251 GADGRADAKLIDIALQPDCSAIRAEIGGQTVTYKLGMPGRHQAINSLAVLAAAELAGADL 310

Query: 330 ALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--YAHTSNSLEMILKN---IRTITSG 382
           AL    L ++    GR   + +  +  G    +D  Y     S+   L           G
Sbjct: 311 ALAALTLSQVVPAAGRGVRKRLEISHSGEATLIDESYNANPASMAAALNVLGGAAPGPQG 370

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           R I V G   +       +   +   +   AI T
Sbjct: 371 RRIAVLGDMLELGPRSAELHAGLNAAVKANAIDT 404


>gi|116253047|ref|YP_768885.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|189029026|sp|Q1ME34|MURC_RHIL3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115257695|emb|CAK08793.1| putative UDP-N-acetylmuramate--L-alanine ligase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 471

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 142/418 (33%), Gaps = 51/418 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLEAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ R  +   ++++ G      +  K V     +    + +  +        
Sbjct: 218 LDHPEVQSLVGRIEDR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVIEL 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+
Sbjct: 276 KGLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L+  R    GR+I V                    + AD   +    
Sbjct: 335 DDYGHHPVEIKAVLRAARESCKGRVIAVHQPHRFSRLASLFEEFAACFNDADSIFLAPVY 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKG 468
              EDP +    +   +   I+ G   +A          +   E+    D +V+ G G
Sbjct: 395 AAGEDPIEGIDSV--SLVSRIKSGGHRDARFLTSAEFLPQMVAEVAKPGDFVVLLGAG 450


>gi|109899819|ref|YP_663074.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas atlantica
           T6c]
 gi|122971620|sp|Q15Q18|MURC_PSEA6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109702100|gb|ABG42020.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoalteromonas atlantica
           T6c]
          Length = 484

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 144/429 (33%), Gaps = 47/429 (10%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
             GH      + + A  +VVSSA    +      +   I V+    + L+      +G  
Sbjct: 66  FFGHQ--ASNVEK-ANVVVVSSAIDPTNPEVNAANEMRIPVIRRA-EMLAELMRFRHG-- 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  S +  I  ++     ++ PT  I                    
Sbjct: 120 ----IAIAGTHGKTTTTSLIATIFAQA-----ELDPTFVIGGLLNSAGTNARLGSS-QYL 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + V                ++ +    TN+  DH++ +Q            
Sbjct: 170 IAEADESDASFV---------------HLQPMVSVVTNIEPDHMETYQGDFQKMQDTYID 214

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
           F   LP    A++  DD    +++ R      + L+ GY     +    V    N+ + T
Sbjct: 215 FLHNLPFYGLAVLCIDDPVITQLLPRIKR---KYLTYGYSEVADVRATHVKHTFNQSEFT 271

Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +   + +D   +   PG+  V NAL A  +     I+ A +   L     +  RFE +G 
Sbjct: 272 LKRKDHQDIQVVVNAPGKHNVLNALAAIAVATDENIEDAAITAALANFSGIGRRFEMLGE 331

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T      +  DY H    +E  +          R+++ +                  L
Sbjct: 332 FATGEGDVLLVDDYGHHPTEVEATIAVARNNWPDRRLVMAYQPHRYSRTRDLYEDFVRVL 391

Query: 408 DLADIAIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D+ ++ D     E      D + +   +   G    I   ++ E  +   + L  QD
Sbjct: 392 SQVDVLLLLDVYSAGEEKIEGADSKSLCRSMRQRGQLEPIYVADKNELPKLLADNLKDQD 451

Query: 461 VLVVAGKGH 469
           +L+  G G+
Sbjct: 452 ILLTQGAGN 460


>gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
 gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
          Length = 849

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 166/467 (35%), Gaps = 40/467 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D  +L+            R+    S DSR    G +F+A+   ++DGH +I  A+A GA 
Sbjct: 8   DLDDLLAVGGRLTAPPVTRRFTGFSYDSRLTGVGELFLALRTPRDDGHAYITDALASGAA 67

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV ++         T  +N  +++ D+     + +A+    +    ++ VTG+ GK+S 
Sbjct: 68  GIVCAT-------PPTESANATVIIADDPALLAARWAAVRLRQVAPLVVGVTGSVGKTST 120

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +           G   T  S     R +  S I L  +L+ L       V    
Sbjct: 121 TRAIAAVLA---------GIAPTFRS-----RRSFNSLIGLPVSLARLQDDHRFAVLEYG 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           +++  +  RL  +        T+     +    +          L E L P +  A++  
Sbjct: 167 TAYPGELRRLTTLFPPQIAVVTSASPMRLSAFGSVAGLTREFGALVEAL-PADGWAVLNG 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD     +         +VL+ G  G   +  + +    +  QV +S  G   D   PL 
Sbjct: 226 DDPTVAALRA---VTLAQVLTFGAGGGCDLRAETLRFGLDGTQVRLSYGGASVDAAIPLL 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  V  AL A G+ +A G+        L  +    GR       +    +         
Sbjct: 283 GEPAVGAALAAVGVGLACGMSLEQAAARLAHIEPPAGRLRPHPARNGAILLDDTVGAEPA 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM------GKIALDLADIAIVTDDNPR 421
           ++   L+ +  + + R I V G         R         G +A  +AD+ I   D   
Sbjct: 343 AMLAALRTLAALPARRRIAVLGDLPADSDDPRNEKNVCTAIGTLAAQVADVLIWKGDAGT 402

Query: 422 S--EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           S      +IR ++   I   I       A+        + D+++V G
Sbjct: 403 SVIHAARQIRPDLPATIVHTI-----AAALEAVPSDTGEGDLILVCG 444


>gi|269956080|ref|YP_003325869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304761|gb|ACZ30311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 162/462 (35%), Gaps = 45/462 (9%)

Query: 28  RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-----LQD 81
            ++   V +DSR ++ G +F AI G + DG  F   A+A GA  ++ +         + D
Sbjct: 23  VRVTGPVVADSRLVEPGALFAAIPGARVDGADFAAGAVADGAVLVLAAREIDGLPVVVVD 82

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A    +   +V++  R                 + ++TG++GK++    + ++     
Sbjct: 83  DVAAALGDLARVVLERLRAA----------NPAVKVFSITGSAGKTTTKDLLGRLVA--- 129

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                 G + TI+                   L   ++     + + A   G   +    
Sbjct: 130 -GEAADGGSDTIA----PTGSFNSEIGLPLTVLRGTAATRKLVLELGADKPGDIGYLASI 184

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++        +G  HI++  +Q+A  +AK  +   L+P    A++ ADD     +  RA 
Sbjct: 185 VRPQIAVILMVGTAHIEFFGSQEAIADAKAEVLGGLVP-GGTAVLNADDERVLGLAPRAT 243

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQ-QVTISVEGK-----------DFDFLFPLPG 308
             G RV++ G      +  + V      +   T+ V G+                  L G
Sbjct: 244 ALGHRVVTFGRVPSADVRAEDVTVDATGRASFTLRVRGRVAAAGEVADDLRLPVSLRLVG 303

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367
           E  V NAL AA   I  G   ++V E L            V     G  +  D Y     
Sbjct: 304 EHHVSNALAAATAAILAGTAPSVVAERLSAAEPGSPHRMAVTERPDGITVVDDAYNANPE 363

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGK-----RPIMGKIALDLADIAIVTDDNPRS 422
           S+   L+++  +       V   G  R+ G+        +G++ + L    +V   +   
Sbjct: 364 SMRAALRSVAVMAGRTRRSVAVLGEMRELGEGARAAHDAIGRLVVRLNIKLLVVVGDGAY 423

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E    E   G    +   +   A     E L   DV++V
Sbjct: 424 HIHEGAMQEGSWG-EETVFVPDLDAARAELAERLRPGDVVLV 464


>gi|260462091|ref|ZP_05810335.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031951|gb|EEW33218.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
          Length = 468

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 140/417 (33%), Gaps = 47/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + +V        L   R         +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELKAAREKLLPIVRRAEMLAELMRFR-------QAVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVATLLEAGGLDPTVING-GIINAYGTNARMGDGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++ +      A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPAEIAVVTNIDPEHLDHYGSFDKVREA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  +   RV++ G      +            +  + +  +        
Sbjct: 218 TDHPEVQALVSRIEDR--RVITYGENAQADVRFTNHRMAGAISEFDVVIRNRKTGGQTAI 275

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D   P+PG   V NA  A  +   +G+ +  + + L     V  RF   G+   G  ++
Sbjct: 276 SDLRLPMPGRHNVSNATAAIAVAHELGLSAEAIKKGLSSFAGVKRRFTHTGSW-NGVDVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +LK  R+ T GR+I +                    + AD  +V    
Sbjct: 335 DDYGHHPVEIAAVLKAARSATKGRVIAIAQPHRFTRLHDLFNEFSACFNDADTVMVAPVY 394

Query: 420 PRSEDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKGH 469
              E+P       E++  I     +  R      AI   I ++    D +V  G G+
Sbjct: 395 AAGEEPIDGVTSDELVSRIRAGGHRDARYIEGPAAIAPVIRDLAKPGDFVVFLGAGN 451


>gi|262395258|ref|YP_003287112.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|262338852|gb|ACY52647.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 485

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 157/448 (35%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVIAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGK 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+ +  
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELIPRISR---QVITYGFSEDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  +G+ + D    +PG     NA  A  +     I+   +L+
Sbjct: 260 DVRIENYRQEGQQGKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +   R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                           L+  D+ I+ D     E P  I       +   I    +++ I 
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKVDPIF 437

Query: 451 T-AIEML--------NKQDVLVVAGKGH 469
              IE L           D+++  G G 
Sbjct: 438 VPEIEQLPSVLANVIQDGDLILTQGAGD 465


>gi|187932746|ref|YP_001884683.1| cyanophycin synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|187720899|gb|ACD22120.1| cyanophycin synthetase [Clostridium botulinum B str. Eklund 17B]
          Length = 872

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 129/354 (36%), Gaps = 25/354 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +  + G   + +G TST   +  +  +          A + L ++ V    +E + 
Sbjct: 495 LINHVLSQMG---YSVGMTSTEGIYVNNKCIHKGDDSGFNSAKTILLNRDVDIAVLETAR 551

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L          TN+  DH  +D   + +     K  L  E + +    I+ AD
Sbjct: 552 GGLIRKGLAYDIADVSVITNITNDHLGLDGINSMEELSFVKA-LVGEAVKENGFTILNAD 610

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304
           D +SK ++ R                  K I    +        + +    K +      
Sbjct: 611 DEWSKTIINRIKANKIFFSKYADNELIQKNIIDGGISVFIENDNIIVVNNHKKYSICSIN 670

Query: 305 ------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                     ++ + N + A G  + + ID  ++ + +   ++      F        +I
Sbjct: 671 DVPLSYNGLLKYNLENIMAACGALVGMNIDYCMISKGIMSFNLNNNNGRFNIYEIEDRKI 730

Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +DY H     + +L ++  I     +I V G  GDR       +G+I  ++ D  I+ +
Sbjct: 731 ILDYGHNIEGYKAVLSSLDKIKKDKDLIGVIGIPGDRCDDIAIEIGEICSEMLDKIIIKE 790

Query: 418 D-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D + R  D  +I + + +G+             + I+A+  A+ +  K D +VV
Sbjct: 791 DKDRRGRDEGEIASLLKNGVLRKNKNAKIHVCLDEIKALEKALMISKKGDTIVV 844


>gi|254230417|ref|ZP_04923797.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|151937050|gb|EDN55928.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 484

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 157/448 (35%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVIAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGK 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+ +  
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELIPRISR---QVITYGFSEDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  +G+ + D    +PG     NA  A  +     I+   +L+
Sbjct: 260 DVRIENYRQEGQQGKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +   R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                           L+  D+ I+ D     E P  I       +   I    +++ I 
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKVDPIF 437

Query: 451 T-AIEML--------NKQDVLVVAGKGH 469
              IE L           D+++  G G 
Sbjct: 438 VPEIEQLPSVLANVIQDGDLILTQGAGD 465


>gi|54298603|ref|YP_124972.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148358651|ref|YP_001249858.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|296108259|ref|YP_003619960.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|59798137|sp|Q5X1S6|MURC_LEGPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224700|sp|A5IAW2|MURC_LEGPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53752388|emb|CAH13820.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148280424|gb|ABQ54512.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|295650161|gb|ADG26008.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|307611493|emb|CBX01164.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           130b]
          Length = 469

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 136/418 (32%), Gaps = 49/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+      L+      +G      +A+ GT G
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVIPRA-AMLAELMRFRHG------IAIAGTHG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL    +               +  +   L K+  ++     +  
Sbjct: 126 KTTTTSLVSSLLAEGGLDPSFV---------IGGKLNSCGANAQLGKSAYFVVEADESDA 176

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S               +K +    TN+  DH+D ++            F   LP    A+
Sbjct: 177 SFL------------FLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAV 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFD 301
           +  +D     ++          L+ G++ +  + + +            V      K   
Sbjct: 225 VCLEDEEICRILPAIQRP---TLTYGFKEEAHY-RAINWTQKGMLSEFVVVRPAPHKQLT 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRI 358
             F  PG   V NAL +  +   +G+D   ++  L+K   V  RF+ +G          I
Sbjct: 281 IQFQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAII 340

Query: 359 YVDYAHTSNS-LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H     L  I    R     R++ VF                  L L+D  ++ D
Sbjct: 341 VDDYGHHPQEILSTIDAFRRVWPERRLVHVFQPHRYTRTQSLHRQFVDVLSLSDELLLMD 400

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
                E        E +  EI              ++++  + E +   DV+++ G G
Sbjct: 401 IYAAGETAIPGVTSENLANEIRSRDKRVTIVS--EQSLKATLDEFIKDGDVILMQGAG 456


>gi|291166629|gb|EFE28675.1| UDP-N-acetylmuramate--alanine ligase [Filifactor alocis ATCC 35896]
          Length = 452

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 143/427 (33%), Gaps = 41/427 (9%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYG- 111
           F  +   +GA   +  SA +++       ++A I  + P  +    +    L  S   G 
Sbjct: 37  FTKELANKGATIHIGQSAQNIKPDIDLVIYTAAIHPDNPEWMEAKKQNLKMLSRSEFLGL 96

Query: 112 --KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
             K  EN +A++GT GK++  S +  +          I     +     + R+   S  +
Sbjct: 97  VMKKYENSIAISGTHGKTTTTSML-SVLYSYSDYDPTILVGGNLKEINGNFRIG-NSEHF 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           + +A  Y  S              LD +         G   N+  DH+DY  +      +
Sbjct: 155 ITEACEYFDSF-------------LDLY------PKFGIILNIEADHLDYFDSLDVIIQS 195

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             R F + +      I   DD   +  +K   N  C +         + +      +   
Sbjct: 196 -FRKFSQNVSSNGYTIANGDDQNVRTALKDLPN--CILFGYDKNNDAVIVDNSFDKNGNG 252

Query: 290 QVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +I ++      F   +PG+  + NA  A        I    +   +   H V  RF++
Sbjct: 253 HFSIQLDSDILGPFSIKVPGKHNIMNATAAILTAYKDDIPLEKIQHGIFSYHGVDRRFQY 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G N     +Y DYAH  + ++  L   + +   R++ +F                 +  
Sbjct: 313 KG-NYGDVLVYDDYAHHPSEIKATLSAAKFLNPNRLVAIFQPHTYTRTKSLLEEFATSFY 371

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            ADI I+TD     E        + +   +       I   +  E       +L K D++
Sbjct: 372 DADIVIITDIYASRETDTGLVSSQDLVNRLKAHGKDAIHLNDITELQNYLDPILQKNDII 431

Query: 463 VVAGKGH 469
              G G 
Sbjct: 432 FTIGAGD 438


>gi|52842820|ref|YP_096619.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|59798151|sp|Q5ZSA5|MURC_LEGPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52629931|gb|AAU28672.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 469

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 136/418 (32%), Gaps = 49/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I V+      L+      +G      +A+ GT G
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVIPRA-AMLAELMRFRHG------IAIAGTHG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL    +               +  +   L K+  ++     +  
Sbjct: 126 KTTTTSLVSSLLAEGGLDPSFV---------IGGKLNSCGANAQLGKSAYFVVEADESDA 176

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S               +K +    TN+  DH+D ++            F   LP    A+
Sbjct: 177 SFL------------FLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAV 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFD 301
           +  +D     ++          L+ G++ +  + + +            V      K   
Sbjct: 225 VCLEDEEICRILPAIQRP---TLTYGFKEEAHY-RAINWTQKGMLSEFVVVRPAPHKQLT 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRI 358
             F  PG   V NAL +  +   +G+D   ++  L+K   V  RF+ +G          I
Sbjct: 281 IQFQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAII 340

Query: 359 YVDYAHTSNS-LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H     L  I    R     R++ VF                  L L+D  ++ D
Sbjct: 341 VDDYGHHPQEILSTIDAFRRVWPERRLVHVFQPHRYTRTQSLHRQFVDVLSLSDELLLMD 400

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
                E        E +  EI              ++++  + E +   DV+++ G G
Sbjct: 401 IYAAGETAIPGVTSENLANEIRSRDKRVTIVS--EQSLKATLDEFIKDGDVILMQGAG 456


>gi|332978085|gb|EGK14823.1| UDP-N-acetylmuramate--L-alanine ligase [Desmospora sp. 8437]
          Length = 466

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 144/418 (34%), Gaps = 45/418 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPENILAVT 121
           G +A++V  A  +  +S +I  +   L               + A+ L  K     +AV 
Sbjct: 58  GHQAVLVEGADRVV-YSTSIPRDNVELKAAREKGMTVLHRSQMLAALLNDKQG---IAVA 113

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G  GK++ +S + Q  +  G       PT  I            +            S G
Sbjct: 114 GAHGKTTTSSMIAQTMEEGGAD-----PTYVIGGEVVSLGSNAKAGSSPYVVAEADESDG 168

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                                       TN+  DH++ ++          R F   + ++
Sbjct: 169 TFLEYF----------------PRIAVVTNIEPDHLENYEGSFEKLKEAYRRFLSQVKED 212

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AI+  DD Y  E+   A     RV++             +  + N+ Q T++ +G   
Sbjct: 213 GVAILGWDDPYLPEI---AGACRARVITYALDREADYTATHLQQVLNRTQFTVNYQGTPL 269

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D    +PG   V NAL A  +C+  G+    + E L +      RF+ +G  + G  + 
Sbjct: 270 GDVTIHVPGRHNVANALAAVVVCLEAGLPFDTIAEGLSRFRGAKRRFQVIG-EADGILVV 328

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAH    +   +  ++ + + RI  VF                 A   AD  ++TD  
Sbjct: 329 DDYAHHPTEIRATINGLKAL-NRRIFGVFQPQRYSRTHLLMEEFSRAFTEADELVITDIY 387

Query: 420 -PRSEDP-EKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P  E P   + +E +  +      P  + +  + +     ++     D+++  G G 
Sbjct: 388 SPPGEPPIAGVTSERLAQMVRENSNPNTVYRATKEDVELHLLQHARPGDLVITMGAGD 445


>gi|89900108|ref|YP_522579.1| cyanophycin synthetase [Rhodoferax ferrireducens T118]
 gi|89344845|gb|ABD69048.1| Cyanophycin synthetase [Rhodoferax ferrireducens T118]
          Length = 858

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 149/387 (38%), Gaps = 32/387 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S+F     G+ P  ++AVTGT+GK++    +  +  ++GL    +G T+T   +    R+
Sbjct: 460 SMFDQHENGRIP--LVAVTGTNGKTTTVRLISHLLAQNGLR---VGMTNTDGVYIAGQRI 514

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--Y 219
            T        A + L    V    +E +  G+ +  L   +      TN+G  DH+   Y
Sbjct: 515 DTGDCSGPKSARNVLQHPDVDAAVLETARGGMLREGLAFDRCDVAVVTNVGSGDHLGLNY 574

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV------------MKRAHNAGCRV 267
             T +     K R+  + +  +  A++ A D     +            M R H      
Sbjct: 575 ITTVEDLAVLK-RVIVQNIASDGVAVLNAADPIVVSMARHCSASIIFFAMDRHHPVMATH 633

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L+ G +  ++    + A   K Q  +++   D          FQ+ N + +A    A+G+
Sbjct: 634 LAQGRRAVYVEGDHLVAAEGKVQHQMALS--DIPISRRGTIGFQIENVMASAAAVWALGV 691

Query: 328 DSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
               +   L             F   + RG  +  DY H  +++  +++ + ++ S R  
Sbjct: 692 GWETIKLGLASFINNNDNALGRFNLFSYRGATVIADYGHNPDAIAALVQAVASMPSKRRT 751

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGN 444
           VV    GDR         +I  +  D  ++  D   R     ++ A +  G+       +
Sbjct: 752 VVISGAGDRRDEDIRQQTEILGNAFDNVVLYQDQCQRGRADGEVLALLREGLAHATRTES 811

Query: 445 RIE------AIRTAIEMLNKQDVLVVA 465
             E      AI TA++ L + D+ ++ 
Sbjct: 812 IAEIQGEFLAIDTAMDTLGEGDLCLIL 838


>gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
 gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
          Length = 823

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/409 (17%), Positives = 147/409 (35%), Gaps = 28/409 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFI 60
           L+ L      E+     I       +KI++++ DSR +      +F+++VG K  G  FI
Sbjct: 2   LRALSIDQIAEITRGELIQNDHI--QKISQIAIDSRQVSNPEKTLFISLVGAKAKGQDFI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  I  G    +V    SL+     + +    ++VD+TRK L   A        + ++++
Sbjct: 60  PALIDLGVRNFIVHKGNSLK---RELLAKANFVLVDDTRKALQEIARYQRSYFEKPVVSI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+ V  ++ Q+  ++   +         S  + ++++  P  ++           
Sbjct: 117 TGSNGKTIVKEWLGQVLSQAYQVAK--------SPKSYNSQVGVPLSVFGI-------DA 161

Query: 181 GVTHVSVEASSH--GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           G     +EA     G        I+   G FTN+G  H +   +Q++    K+ LF+   
Sbjct: 162 GHQVAILEAGISKTGEMAALERIIQPNLGIFTNIGSAHKEGFSSQESKILEKLSLFKG-- 219

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +   D      ++++  +A   +      G              + + I  +  
Sbjct: 220 --SDFLVYCKDQELPASIIEQEFSADKLIAWSDKAGADYTRSIKIQDVGAKIIFIKSDLS 277

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P      + N        + +G+   L+ + L  L  V  R       +    I
Sbjct: 278 TMTFHVPFSDPASLENITHVLVGAMTLGLKPELIQQGLNHLKPVDMRLTLKPGVNDSLLI 337

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              Y +    L++ L  +      +  ++      +      +  ++A 
Sbjct: 338 DDTYNNDLAGLKVALDFLNLQRPKKRKILILSDLLQQGTAAQLYSEVAE 386


>gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
          Length = 835

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 141/404 (34%), Gaps = 37/404 (9%)

Query: 20  IFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           I      ER I  + +DSR + +    +F A+     DGH +IPQ    G  A  +    
Sbjct: 14  IQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLYEHGVRAFFICEPI 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                      +  I+ V  T + L   AS    ++   ++ +TG++GK+ V  ++  + 
Sbjct: 74  E---PYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKTVVKEYLYHLL 130

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                     G    + S       +  S + +  ++  +  +    +     S  ++  
Sbjct: 131 S---------GCYRIVRS-----PKSYNSQLGVPLSILNMEEEYTLAIFEAGISMPMEML 176

Query: 198 RLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           RL   I+   G  TN+G  H +   +       K++LF +       A  +  DA S E+
Sbjct: 177 RLQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVD-------ADHFVYDADSDEI 229

Query: 257 MKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +   N G    ++G+       + H+    +      +T     +      P   +  +
Sbjct: 230 QRGIDNLGLSDKAIGWSLTPGKAYYHVSYSHSGDCTTTITAQHADESSTVTIPFADQASI 289

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            NA     L   + + +A     L +      +  R E     +    I   Y +  NSL
Sbjct: 290 QNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSL 349

Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            + L   +  T     + +++        Q  R +  ++   +A
Sbjct: 350 RIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIA 393


>gi|241664306|ref|YP_002982666.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12D]
 gi|240866333|gb|ACS63994.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12D]
          Length = 483

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 142/423 (33%), Gaps = 54/423 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL    +     ++S   + RL T         ++       + ++
Sbjct: 117 TTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIVAEADESDASFLN 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A        F + LP    A++
Sbjct: 171 ---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-----SVEGKDF 300
             DD   +E++         V+  G+            A+  + + T+            
Sbjct: 216 CVDDPNVREILPFVSKP---VVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG- 355
                LPG   V NAL A  +   + +    +++ L + + V  RF+  G     + +G 
Sbjct: 273 SITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGR 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAI 414
             +  DY H    +   L   R    GR +V+        + +      I  L   D  +
Sbjct: 333 FTLIDDYGHHPVEMAATLAAARGAFPGRRLVLSFQPHRFTRTRDCFEDFIKVLGTVDALL 392

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVA 465
           + +     E P  I A     +   +   N+IE +         +  I+     DV++  
Sbjct: 393 LAEVYAAGEPP--IVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGDVVITM 450

Query: 466 GKG 468
           G G
Sbjct: 451 GAG 453


>gi|186680972|ref|YP_001864168.1| UDP-N-acetylmuramate--L-alanine ligase [Nostoc punctiforme PCC
           73102]
 gi|229620055|sp|B2J717|MURC_NOSP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|186463424|gb|ACC79225.1| UDP-N-acetylmuramate--alanine ligase [Nostoc punctiforme PCC 73102]
          Length = 481

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 131/413 (31%), Gaps = 56/413 (13%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +    A +    P+L   +    L   A           +AV GT GK++
Sbjct: 91  VICSTAINTNNLEYKAALELGCPVLHRSDVLAAL--IADYYS-------IAVAGTHGKTT 141

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL                D  +     +   +  + L          +
Sbjct: 142 TSSMIGYMLLEAGL----------------DPTILVGGEVNAWEGNARLGQSQYLVAEAD 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++ T +   +    +F+         I   
Sbjct: 186 ESDGSLVKH-----APEIGIITNIELDHPDHYDTLEEVID----IFQTFAKGCKTLIGSI 236

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLF 304
           D A  +       +     +S            V  I  +   T ++  +          
Sbjct: 237 DCATVR-------DRLQPTISYSLHSDTDADYTVTNIDYRADGTTALVWERGKALGVLKL 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L     + NAL A  +  A+G++   + + +        RFE  G    G     DYAH
Sbjct: 290 RLLSRHNLSNALAAVAVGRALGLEFGAIAKGIATFEGARRRFELRG-EVDGITFIDDYAH 348

Query: 365 TSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             + + + L   R       R++ +F                 +   AD+ ++TD     
Sbjct: 349 HPSEIRVTLAAARLQARPGQRVVAIFQPHRYSRTLTFLEEFAESFTHADLVVLTDIYSAG 408

Query: 423 EDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E        E++ AEI       + +          ++ L   D+ +  G G+
Sbjct: 409 EPNLGQITGEQLAAEIAKQHSQVVYQPTLPSVCEYLLQTLRPGDLALFLGAGN 461


>gi|269967384|ref|ZP_06181444.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
 gi|269827972|gb|EEZ82246.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
          Length = 485

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 157/448 (35%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVMAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGK 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+ +  
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELIPRISR---QVITYGFSEDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  +G+ + D    +PG     NA  A  +     I+   +L+
Sbjct: 260 DVRIEDYRQEGQQGKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +   R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                           L+  D+ I+ D     E P  I       +   I    +++ I 
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAAGEKP--IAGADGRALCRTIRSRGKVDPIF 437

Query: 451 T-AIEML--------NKQDVLVVAGKGH 469
              IE L           D+++  G G 
Sbjct: 438 VPEIEQLPSVLANVIQDGDLILTQGAGD 465


>gi|149926397|ref|ZP_01914658.1| cyanophycin synthetase [Limnobacter sp. MED105]
 gi|149824760|gb|EDM83974.1| cyanophycin synthetase [Limnobacter sp. MED105]
          Length = 870

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 142/395 (35%), Gaps = 32/395 (8%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +    +     +        ++AVTGT+GK++    ++QI +     + ++G T T    
Sbjct: 458 DVGAAVIDLMFKKDENGRIPVVAVTGTNGKTTTVRLIEQILR---YHNLRVGFTGTEGVV 514

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-D 215
              + + T        A   L         +E +  G+ +  L       G  TN+G  D
Sbjct: 515 VNGHLIDTGDCSGPKSAHKVLVHPEADAAVLECARGGMLREGLGFDMCDVGIVTNIGEGD 574

Query: 216 HID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           H+   +  + +     K  L + + P    A++ ADD ++  + K          S    
Sbjct: 575 HLGLNFIDSVEDLALLKSVLVQNVAP-NGLAVLNADDRHAANMAKLTPGRVLFFTSNPDN 633

Query: 274 ---GKFIHLKKVCAIHNKQQVTISVEG-------KDFDFLFPLPGEFQVYNALVAAGLCI 323
                     +   IH+ + + IS +         D          FQV N + A    +
Sbjct: 634 PIVAAHKAKGRPVIIHDGRVINISYDDMEKTIDLMDVPLTNNGLFTFQVQNVMCAVAAAL 693

Query: 324 AIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +    +   L         VPGRF F     +GG +  DY H  +++  ++  ++ I
Sbjct: 694 GLNVPFNTIRAALGSFQSTPDTVPGRFNFF--KHKGGSVIADYGHNPDAVSTLVNTLKNI 751

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-- 436
            + R  VV    GDR        G++     D  I+ +D   R     +  A +  GI  
Sbjct: 752 PAVRRTVVISAAGDRRDQDITEQGRLVGGFFDHIILYEDACQRGRPDGETLALLQQGIAL 811

Query: 437 ------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                 P  +E     +AI+ A++      +++V 
Sbjct: 812 ASGDKKPSVVEVRGEFKAIQMALDETGPDHLVLVL 846


>gi|91228515|ref|ZP_01262437.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
 gi|91187949|gb|EAS74259.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
          Length = 485

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 157/448 (35%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVMAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGK 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+ +  
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELIPRISR---QVITYGFSEDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  +G+ + D    +PG     NA  A  +     I+   +L+
Sbjct: 260 DVRIEDYRQEGQQGKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +   R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                           L+  D+ I+ D     E P  I       +   I    +++ I 
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAAGEKP--IAGADGRALCRTIRSRGKVDPIF 437

Query: 451 T-AIEML--------NKQDVLVVAGKGH 469
              IE L           D+++  G G 
Sbjct: 438 VPEIEQLPSVLANVIQDGDLILTQGAGD 465


>gi|320335715|ref|YP_004172426.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
 gi|319757004|gb|ADV68761.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
          Length = 919

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 134/382 (35%), Gaps = 36/382 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TGT+GKS+ +  V  I + +G     +G T++   +     +          A  
Sbjct: 513 PVIAITGTNGKSTTSRMVAHILKHAGKV---VGLTTSNGIYVDGELIMGGDTTGPKSAKV 569

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            LS   V    +E +  G+ +  L   +   G+  N+  DH+      T +     K  L
Sbjct: 570 ILSDPNVEVAVLETARGGILREGLGFDRADVGAVLNIQPDHLGMKGIETVEDLAYVKS-L 628

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK----------VC 283
             E++     +++ ADD  +  + ++A  +              HL++            
Sbjct: 629 VVEVVTDTGTSVLNADDPLTVNMQRKAGGSITFFSMQDSNACSEHLQRHIDEGGTAVVRE 688

Query: 284 AIHNKQQVTISVEGKDFDF--------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           A     ++ +   G  +                   + NAL A G+ +  G++  ++   
Sbjct: 689 ATLLGDELVLYRAGHRYPVIRAREIPATLGGYARVNIANALAAIGVAVGAGVELPVIRAA 748

Query: 336 LEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLE--MILKNIRTITSGRIIVVFGCG 391
           L        +             R+ +DYAH  + L     L        GR+I VFG  
Sbjct: 749 LGSFSTSFEQSPGRLNLYEGHPFRVLLDYAHNPDGLRPLAELVPFLRPAKGRVIGVFGVA 808

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKG 443
           GDR       MG I   + D+ I+ +D + R   P +       G               
Sbjct: 809 GDRRDVDIREMGAILAGMFDLLILREDTDRRGRAPGEGAELTREGALAAGMNPEQIQVIL 868

Query: 444 NRIEAIRTAIEMLNKQDVLVVA 465
           +  +AI  A+      D++V+ 
Sbjct: 869 HEPDAIDAALRAGQAGDLVVIL 890


>gi|187918178|ref|YP_001883741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
 gi|119861026|gb|AAX16821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
          Length = 464

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/425 (15%), Positives = 146/425 (34%), Gaps = 35/425 (8%)

Query: 6   LIYKDFPELINQLS----IFPMQWRERKINEVSSDSRHIQ---AG-WIFVAIVGNKEDGH 57
           +++    ++++ L     +  +   +R ++  S DSR I    +G  ++ A  G++ DG 
Sbjct: 1   MVHIKIKDILDSLGDVKFVGYLSSMQRVVSFYSLDSREINDENSGASLYFAYKGDRVDGF 60

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPEN 116
            F+   I  G +  V S  Y         +  + + L+  N    L   A+    +    
Sbjct: 61  SFVEYLIDIGVKCFVCSKDYEHLCVEYLNKDESLVFLLTSNVVMCLQNLAAHFIKRTNFK 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TG++GK++    +  I         +     T  +   D              L  
Sbjct: 121 RIAITGSNGKTTTKEMLYSILSE------RYKTCKTWGNLNSDIG-------LPLSILRT 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +      V  S  G      + ++      TN+   H+   +  +   + K  +   
Sbjct: 168 EGDEEYAVFEVGISYVGEMNLLSEILEPEIVIVTNISYAHMQAFEDLEMIASEKSEIIT- 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   I+     Y   + + A +    +    +    + +K    +++K     + +
Sbjct: 227 --KSTQMVILNESCPYHSRLREIAKSISPEINIFYFDFNSLQIKSFAFLNDKFSYDFTYK 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  FD+   LPG+  ++NA+    L + +G+    +   L       GR E +    +  
Sbjct: 285 G--FDYSILLPGKHNIFNAISCINLALLLGMSENEIRNGLLNADFQKGRAELLRV--KDY 340

Query: 357 RIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGC----GGDRDQGKRPIMGKIALDLA 410
            +  D Y     S   + + I      G+  ++ G     G    +  +  M ++ L   
Sbjct: 341 LVLNDSYNGNLGSFMALKEMILDFEIKGKKFIILGSFKELGKFAYEAHKTAMREVILMNF 400

Query: 411 DIAIV 415
           D   +
Sbjct: 401 DKVFL 405


>gi|146279501|ref|YP_001169659.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557742|gb|ABP72354.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1279

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/365 (21%), Positives = 127/365 (34%), Gaps = 34/365 (9%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A+ A+ +V S A               I V    R    L A RL        + V G+
Sbjct: 61  LARAADCVVASPAIPETHVERRAARRAGIPVKTRARMLAELIADRL-------TICVAGS 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GKS+V + +  I   +G   F     ++ +       RL  P   ++ +A         
Sbjct: 114 HGKSTVTAMLIHILSAAGKDDFGYMLGASFADPGIVPARLGAPDAPFVTEACEA------ 167

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                    HG   H L          TNL  DH D++        A    F   LP E 
Sbjct: 168 ---------HGALAHWL----PSHAILTNLDDDHADHYGGPSGLRRA-FSAFLSRLPPEG 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+   DD    ++++ A    C  L+ G+  +  +  +     +          +    
Sbjct: 214 RAVACGDDLDVVDILREAR---CAALTYGF--RDENALRAVQAGDGSATVFLHGTELGAL 268

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   + NAL A G+ + +GI        L   H +  R   +GT S+  RI+ D+
Sbjct: 269 SLAVPGRHNLLNALAALGMALTLGIGFRTATGALADFHGIARRLSRIGTGSQ-PRIFDDF 327

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    +   +  +R  T GR+I +          +  +    AL  AD + +       
Sbjct: 328 AHHPTEIAASIAVLRETTQGRLIAILEPQLHSRVSRMALRFAQALGAADRSYILPVAALG 387

Query: 423 EDPEK 427
           E  + 
Sbjct: 388 EAVQA 392


>gi|294338819|emb|CAZ87153.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Thiomonas
           sp. 3As]
          Length = 469

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/433 (21%), Positives = 139/433 (32%), Gaps = 57/433 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  Q A+A+VVS+A    +          I VV      L+       G    
Sbjct: 56  GHD---AAQVQDADALVVSTAVRADNPEVLAARARHIPVVPRAVM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I        +             
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEGGLD-----PTFVIGGRLNSAGVNAK---------- 150

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               QG   V     S     + L     +    TN+  DH+D +    A        F 
Sbjct: 151 --LGQGEYIVVEADESDASFLNLL----PVMAVVTNIDADHMDTYGHDPARLRHAFVDFI 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI- 293
             LP    A++  DDA  + +M         + S G+          V A   +   T+ 
Sbjct: 205 ARLPFYGAAVLCVDDAAVRGIMPFVSKP---ITSYGFAEDAQVRAIDVRAEGAQMHFTVL 261

Query: 294 ---SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               V+         LPG   V NAL A  +   + +D A +   L     V  RF+  G
Sbjct: 262 RRNGVQLPPLAVTLNLPGRHNVQNALAAIAVATELNVDDAAIQRALAGFTGVGRRFQRYG 321

Query: 351 T----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKI 405
                +     +  DY H    +   L   R    GR +V+ F                 
Sbjct: 322 EVAAHHGGHFTLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYTRTRDLFEDFVK 381

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRA--EIIHGI-------PGFIE-KGNRIEAIRTAIEM 455
            L  AD  ++ +     E P        +   +       P F+E   +  +AI   +EM
Sbjct: 382 VLGEADAVLLAEVYSAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVADLPQAI---LEM 438

Query: 456 LNKQDVLVVAGKG 468
             + DVL+  G G
Sbjct: 439 AREGDVLICMGAG 451


>gi|187477730|ref|YP_785754.1| cyanophycin synthetase [Bordetella avium 197N]
 gi|115422316|emb|CAJ48840.1| cyanophycin synthetase [Bordetella avium 197N]
          Length = 857

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 137/374 (36%), Gaps = 30/374 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AV GT+GK++       I   SG     +G T++   +    R+ T        A  
Sbjct: 471 PIIAVAGTNGKTTTVRLSAHILAVSGKR---VGMTNSDGVYIGTRRIDTGDCSGPRSARR 527

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID-YHQTQQAYFNAKMRL 233
            L    V     E +  G+ +  L   +      TN+G  DH+   + T      A  R+
Sbjct: 528 ILLHPDVDAAVFETARGGILREGLAFDRCDVAIVTNIGMGDHLGLGYITTVEELAAVKRV 587

Query: 234 FEELLPKESPAIIYADDAYSKEVM------------KRAHNAGCRVLSVGYQGKFIHLKK 281
             + +  +  A++ A D +   +              R H       + G +  +     
Sbjct: 588 IVQYVRNKGMAVLNAADTHVAAMASVCPGDVTFFAPDRNHPIIATHRAQGRRVVYREDDD 647

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + A    ++V I                FQV NA+   G    +GID A + + L     
Sbjct: 648 IVAAEGGEEVRI--PLAQIPLTRDGAITFQVENAMACIGAAWGLGIDWATIRQALASFVN 705

Query: 342 VPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
                   F   +  G  +  DY H  +++E ++  I  + + R  VV    GDR     
Sbjct: 706 DAQTAPGRFNVFDYGGATLIADYGHNPDAIEALVAAIEALPAKRRSVVISGAGDRRDEDL 765

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIE-------AIRT 451
               +I  D  D  ++ +D   R  +  ++ A +  G+    ++ +RIE       AI  
Sbjct: 766 RRQTEILGDYFDDVLLYEDQCQRGREDGEVIALLRQGLTQA-KRASRIEEIRGEFIAIDR 824

Query: 452 AIEMLNKQDVLVVA 465
           A+E L+  D+ ++ 
Sbjct: 825 ALESLSPGDLCLIL 838


>gi|319407502|emb|CBI81150.1| UDP-N-acetylmuramate--alanine ligase [Bartonella sp. 1-1C]
          Length = 456

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 136/428 (31%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A   GA   +++S+A    +          + VV        L   R      
Sbjct: 39  GHR----AENLGAAEVVIISTAIKKTNPEYIAAQKRHLPVVKRAEMLAELMRFR------ 88

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +   +G     +     I+++  + R+     + +    
Sbjct: 89  -RTIAIGGTHGKTTTTSMVAALLD-AGCFDPIVINGGIINAYGTNARMGDGDWMVVEADE 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S                          +       TN+  +H+D++    A   A  R F
Sbjct: 147 SD--------------------GTFLKLPADIAVVTNIDVEHLDHYGNFNAIREA-FRQF 185

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E +P    A++  D    + +  R H+          Q     L  +     K    I 
Sbjct: 186 VENVPFYGFAVMCIDHPEVQTLASRIHDRWVITYGANPQADIRFL-NLSMEGQKACFDIL 244

Query: 295 VE----GKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +     G+  +    + P+ G+  V NA  A  +   +GI    + + L +   V  RF 
Sbjct: 245 IRSRKTGEKIEISNLILPMSGKHNVSNATAAIAIAHELGISPEAIKKGLAEFGGVKRRFT 304

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G N  G  I+ DY H    ++ +L   R    G II +                    
Sbjct: 305 KTG-NWNGVEIFDDYGHHPVEIKAVLHAARESAKGNIIAIMQPHRYTRLYHLFDDFSTCF 363

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           + AD  ++T      E+P      +++   I + G        +    I          D
Sbjct: 364 NDADTVMITPVYAAGEEPIAGFGSKELVEHIQMAGHRDVHLINSLENVISIVSRFAKSGD 423

Query: 461 VLVVAGKG 468
            +V  G G
Sbjct: 424 YVVFLGAG 431


>gi|282882294|ref|ZP_06290925.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
 gi|281297844|gb|EFA90309.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
          Length = 510

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 125/360 (34%), Gaps = 34/360 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +L +TG+ GK+SV      I +       +    +T SSF     L+      L K   
Sbjct: 161 KVLGITGSFGKTSVKFISDTILKE------KYRTKNTPSSFNTPMGLSKVINNELDK--- 211

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              +  V    + A   G        +    G  T +G  H+   +T +   N K  L E
Sbjct: 212 ---NHEVFIAELGAKQKGEIDEVAKLVSPDIGIITAVGPTHMHLFKTIENIQNTKYELIE 268

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +L P++  AI   D+ Y K +  +      R      +   ++ K +         T+ +
Sbjct: 269 DL-PEDGIAIFNYDNDYVKPLADKTKKKTYRYGIKDIEKLDVYAKDIRVNEKGSTFTLGI 327

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G  +      L G   + N L  A     +G +   +   +EK+  V  R   V + + 
Sbjct: 328 KGLGEISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIKNGIEKVKAVEHRLNIVPSPA- 386

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQGKRPIMGKIALDLA 410
           G  +  D +          L  I     G+ I++     +    ++ +   +G     + 
Sbjct: 387 GYVVIDDAFNSNPVGFRAALSVIDEFKEGKKIIITPGMVELGAIEEEENYKIGIEIAKVC 446

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-------TAIEMLNKQDVLV 463
           D  I+          +KI A I   +       +RI  ++         +E+    DV++
Sbjct: 447 DYVILVG--------QKISAPIKRALIDNNFNEDRIFTVKSLNDGTSKLVEIAKAGDVVL 498


>gi|89893538|ref|YP_517025.1| hypothetical protein DSY0792 [Desulfitobacterium hafniense Y51]
 gi|219666866|ref|YP_002457301.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
 gi|89332986|dbj|BAE82581.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537126|gb|ACL18865.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
          Length = 435

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 148/422 (35%), Gaps = 46/422 (10%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F    + + A+ +V S+AY  ++     R+    + V +  +FL    S+  G      
Sbjct: 40  NFSAANVEK-ADIVVASAAYG-ENHEEIARARELNIPVYSYPQFLGRLMSKKRG------ 91

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  + +     +SG     I PT  + S          S           
Sbjct: 92  IAVAGTHGKTTTTAMIGLALLQSG-----IDPTIVVGSDVPSIGGNAYSGQG-------- 138

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                      A S    +H L+         TN+  DH DY +       A   +  + 
Sbjct: 139 -------DFFLAESCEYRRHFLNY-SPEYLIITNIEFDHPDYFKDLDDVVCAFSEI-AQK 189

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           +P      I+ +D   K +  ++      +++ G  +   ++   +        +TI   
Sbjct: 190 IPPHGRIFIWHEDPQRKAIQAQSP-----IITFGLNEEADVYATNIQFHDEGSTMTIVAH 244

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G    +F   + G+  + NAL +  LC+ IG+ +  VLE L   +    RFE +G N+ G
Sbjct: 245 GTVLGEFHLHVSGKHNILNALASIALCLEIGVPTEKVLESLSHFNGTKRRFEHIGQNA-G 303

Query: 356 GRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    +   L+    +    RI  VF         K       +   AD  +
Sbjct: 304 ALIVDDYAHHPTEIRSTLEGARLSFPDRRIRAVFQPHTFSRTEKLLQEFSQSFQAADEVV 363

Query: 415 VTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + +        N  +     +   I           +  E      + L+  D+++  G 
Sbjct: 364 IAEIFASARETNLNTISASSLADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLTLGA 423

Query: 468 GH 469
           G 
Sbjct: 424 GD 425


>gi|309783022|ref|ZP_07677741.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918130|gb|EFP63808.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
          Length = 483

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 142/423 (33%), Gaps = 54/423 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL    +     ++S   + RL T         ++       + ++
Sbjct: 117 TTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIVAEADESDASFLN 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A        F + LP    A++
Sbjct: 171 ---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-----SVEGKDF 300
             DD   +E++         V+  G+            A+  + + T+            
Sbjct: 216 CVDDPNVREILPFVSKP---VVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG- 355
                LPG   V NAL A  +   + +    +++ L + + V  RF+  G     + +G 
Sbjct: 273 SITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGR 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAI 414
             +  DY H    +   L   R    GR +V+        + +      I  L   D  +
Sbjct: 333 FTLIDDYGHHPVEMAATLAAARGAFPGRRLVLSFQPHRFTRTRDCFEDFIKVLGTVDALL 392

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVA 465
           + +     E P  I A     +   +   N+IE +         +  I+     DV++  
Sbjct: 393 LAEVYAAGEPP--IVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGDVVITM 450

Query: 466 GKG 468
           G G
Sbjct: 451 GAG 453


>gi|225850024|ref|YP_002730258.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
 gi|225646530|gb|ACO04716.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
          Length = 440

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 152/421 (36%), Gaps = 49/421 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+++++     E++    +  ++  +++I     DSR  Q    FV + G+K DGH FI
Sbjct: 1   MKIKEIL-----EIVKGRPLK-LRDADKEIKRFIIDSRKAQKDSFFVPLKGSKADGHDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +G+   + S     ++           ++VD+T K L+       G      L  
Sbjct: 55  DDALKKGSSGYLTSIETDYKNG----------ILVDDTLKALTEI-----GIFKRKKLKK 99

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
                 +S  +  ++I +      F++   +T  ++         + I L   LS +   
Sbjct: 100 AVGITGTSGKTTTKEILRFLLSDIFRV--YATEGNY--------NNEIGLPLTLSNIPEN 149

Query: 181 -GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V    + AS  G     +   K      T++G  HI+   + +     K  +F+    
Sbjct: 150 TEVGVFELGASKRGDISKLVSISKPEVRVLTSVGHGHIEGFGSFEGVVQGKGEIFDG--- 206

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK 298
                 +  +D     +     +   + ++ G      I + ++         T+S +  
Sbjct: 207 --GEISVLPED-----LKIYYMDRLKKYVTFGISDYADIKISEINITPEGTAGTVSYKND 259

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P+       N   A  +  A+ I+     E L    +  GR + +   S    +
Sbjct: 260 KIRITVPVYSRALFNNIAAALSVLYALDINPVRSAEKLRDFSLPEGRGKVLRKGSL--TV 317

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAI 414
             D Y     S++  ++ +  I S R+++   +   G   +Q    +  +I     D+ +
Sbjct: 318 IDDSYNANPLSVKNAIETLSGIPSFRVLILGDMLELGDLSEQMHIKVGKEILSSDIDLIL 377

Query: 415 V 415
           +
Sbjct: 378 L 378


>gi|302528468|ref|ZP_07280810.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302437363|gb|EFL09179.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 472

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/411 (21%), Positives = 146/411 (35%), Gaps = 39/411 (9%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A+VVS+A    +          I V+   +    L A          +  + GT GK+S
Sbjct: 76  SAVVVSTAIKETNPELAAARERGIPVLHRAQALAGLMAGH-------RVACIAGTHGKTS 128

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +    Q                +   D        +  + A ++    GV     +
Sbjct: 129 TTSMLTVALQ----------------NCRMDPSFAIGGDLNESGANAHHGEGGVFVAEAD 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S      +            TN+  DH+D+H T +AY       F   +      I+ A
Sbjct: 173 ESDGSFLTY-----TPSVAVVTNVEPDHLDHHGTAEAYVKV-FSDFVGQIEPGGLLIVCA 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           DD  +  + + A  AG RV   G        + +       +   V I+++G++ D    
Sbjct: 227 DDEGAARLGEEAAAAGVRVRRYGRAASGEGDVRVLDYTPAPDGGVVRIALDGEEHDLRVA 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PGE    NA+ A    + +G     +   L     V  RFEF G      R+Y DYAH 
Sbjct: 287 VPGEHMALNAVAALLAGLELGAPLDGMAAGLAAFGGVRRRFEFKGRAGD-VRVYDDYAHH 345

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +   L+ +RT    GR++VVF                 AL LAD  +V D     E+
Sbjct: 346 PTEVAAQLRAVRTAAGNGRVVVVFQPHLYSRTQTFAAEFAEALSLADEVVVLDVFGAREE 405

Query: 425 P-EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           P   +   +I G   +P   +    + A     +++   D+ +  G G  T
Sbjct: 406 PVPGVTGALIAGRVTVPVHYQPAFDVAA-GLVADLVRPGDLAITMGAGDVT 455


>gi|313903534|ref|ZP_07836924.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466087|gb|EFR61611.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 478

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 102/282 (36%), Gaps = 20/282 (7%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  +H+D+++          R F   +      +   D    ++++      
Sbjct: 183 PRIAVVTNVEPEHLDHYEGDFRRLLDAFRGFLGNVRPGGLVVACGDHPVVRQLLAGLPAG 242

Query: 264 GCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
             RV   G + +  HL  + V       + ++  EG+   +    +PGE  V NAL A  
Sbjct: 243 RVRVARYGVEAEDCHLRARDVQTGPEGTRFSVWQEGRPLGEVTLAVPGEHNVLNALAALA 302

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL--KNIRT 378
           + + +G+   +  + L   H    RF+ +  +  G  +  DYAH    +   L     R 
Sbjct: 303 VGLEVGVPFGVAAQALAGFHGAKRRFQVIH-DRDGILVVDDYAHHPTEIRATLRAARQRR 361

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDP----------EK 427
             +GR+I VF                 A   AD  I+T+   P  E P          E+
Sbjct: 362 GAAGRVIAVFQPQRYSRTRLLMDEFARAFGDADKVILTEIYAPPGERPIPGVSSAVLAER 421

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I  E    +  F    +R + I   +  +   D+++  G G 
Sbjct: 422 IAQEEGRPVDLF---ASREDLIEHLLATVRPGDLVLTMGAGD 460


>gi|193214550|ref|YP_001995749.1| UDP-N-acetylmuramate--L-alanine ligase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088027|gb|ACF13302.1| UDP-N-acetylmuramate/alanine ligase [Chloroherpeton thalassium ATCC
           35110]
          Length = 470

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 132/416 (31%), Gaps = 44/416 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV SSA   +       +    + V    + L     R  G      + + GT GK
Sbjct: 67  GADVIVHSSAVKPEMNEEVQEAFARQIPVIKRDEMLGELMRRKAG------ICIAGTHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V  + +        I     IS +   + +       + +A  Y  +       
Sbjct: 121 TTTTTMVGTMLKECHEDPTVI--IGGISDYFNGSAVVGNGNYMVIEADEYDRTF------ 172

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +    G  T L  +H+D ++       A ++ F   +P     I 
Sbjct: 173 -------------LKLTPTIGVITTLEAEHLDIYKDLDDLKQAFVQ-FANTVPFYGAVIC 218

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFD-FLF 304
             D+     ++   +    RV++ G   +     K+V         T++  GK       
Sbjct: 219 CIDEPAIAAILPCLNR---RVITYGLTPEAELQAKEVVFHGKTAHFTVTHLGKPLGKLEL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDY 362
             PG   V NAL    + + +G++   +   L     V  RF    ++    G  +  DY
Sbjct: 276 KAPGLHNVKNALATVAVGLELGLEFDSICRALASFQAVRRRFHVKYSDGEPNGLMVIDDY 335

Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH    +   L+  R       +I VF                 AL LAD  IVTD    
Sbjct: 336 AHHPTEVRATLEAARLGWPKHHLIAVFQPHLFSRTQTFADEFGKALALADEIIVTDVYAS 395

Query: 422 SEDPEK--------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E  E         +   +            + + I+  +   +   +++  G G 
Sbjct: 396 REKAEDFIGVSGDLVVRAVQKAGGKASYIEQKSDIIQQLLNRASAGQMIITMGAGD 451


>gi|326315571|ref|YP_004233243.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372407|gb|ADX44676.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 475

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 148/432 (34%), Gaps = 55/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA+A+V S+A    +          I VV      L+       G    
Sbjct: 56  GH---AAAHIEGADAVVTSTAVQADNPEVLAARERKIPVVPRALM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   +GL      PT  I                L  A +
Sbjct: 108 --IAIAGTHGKTTTTSLVTSVLAEAGLD-----PTFVIGGR-------------LNSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA     D   L+ +  +    TN+  DH++ +        +    F 
Sbjct: 148 NAKLGQGEYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFGRLKSAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
             +P    AI+  D+   +E++    +  C V S G+          V A   + +  + 
Sbjct: 205 HRMPFYGTAILCTDNPAIREIL---PDVTCPVTSYGFSEDAQVRAVDVRADAGRMRFRVQ 261

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D D +  L GE  V NAL A  + + + I    +L  L +   V  RF+  G
Sbjct: 262 RRNGVTLPDLDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYG 321

Query: 351 T-NSRGG---RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              ++GG    +  DY H    +   L   R      R+++ F                 
Sbjct: 322 ELPAQGGGTFTLIEDYGHHPVEMTATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVK 381

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEML 456
            +  AD  ++T+     E P  I A     +   +    ++E +         R   +  
Sbjct: 382 VMGSADAVLLTEVYAAGEAP--IVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIADNA 439

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 440 RSGDVVLCMGAG 451


>gi|114321344|ref|YP_743027.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227738|gb|ABI57537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 449

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 154/434 (35%), Gaps = 53/434 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
             A+  GA  I+VS   SL++       R+  P++        + LFA          + 
Sbjct: 64  DAALLAGAGEIIVSPGVSLREPALETARRAGVPLI------GEIELFARHAD----APVA 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GKS+V + V ++ + +G      G   T +    D                   
Sbjct: 114 AITGSNGKSTVTTLVGRMAEAAGRRVAVGGNLGTPALALLDGETRP-------------- 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E SS  L+      +     +  N+  DH+D H +  AY   K R+F    
Sbjct: 160 ----DAYILELSSFQLE--TTHSLAPRVAAVLNISADHMDRHGSVSAYAGIKARIFHG-- 211

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++  DD     + +        VL             V        + ++ E  
Sbjct: 212 --AGVQVLNLDDPVVAAMAQPGRT----VLGFSLASNPRRGAGVADHRGAPWLHLNGEPV 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  LPG     NAL A  L   +G+  A + E L +   +P R E+V  ++ G R 
Sbjct: 266 LPAADLRLPGLHNRANALAALCLGQGLGLPVAAMAEALRRFTGLPHRTEWVAEHA-GVRW 324

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y D   T+  +   +  IR +     +V+   G  +     P+   +        ++  D
Sbjct: 325 YNDSKGTN--VGAAVAAIRGLAGP--VVLIAGGDGKGADFLPLADALREKGRAAVLIGRD 380

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            PR        A+++ G+       +  +A+R A  +    D ++++     +  +    
Sbjct: 381 APR-------LAQVLSGVVPVERAADMRDAVRRAANLARSGDAVLLS-PACASFDMFRGF 432

Query: 479 EKKMSVDCDIIREI 492
           E +     D +RE+
Sbjct: 433 EHRGEAFRDAVREV 446


>gi|298490184|ref|YP_003720361.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
 gi|298232102|gb|ADI63238.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
          Length = 493

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 131/413 (31%), Gaps = 49/413 (11%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +    A +    PIL   +    L   A           +AV GT GK++
Sbjct: 96  VICSTAINTNNLEYKAALELGCPILHRSDVLAAL--IADYYS-------IAVAGTHGKTT 146

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  +  ++GL                D  +     +   +  + L          +
Sbjct: 147 TTSIIGYMLLQAGL----------------DPTILVGGEVNAWEGNARLGESKYLVAEAD 190

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D+++  +   +     F++        +   
Sbjct: 191 ESDGSLVKH-----SPAIGVITNIELDHPDHYENLEEVVDT----FQKFAQGCQILVGSI 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLF 304
           D    ++   R        +S     +      V  I  +   T ++  +          
Sbjct: 242 DCDTVRDCFDRPGQRLKPTISYSLHPETNADYTVTNIDYRADGTTALVWEKAKALGVLNL 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L     + N L A  +  ++G++   + + +        RFEF G  + G     DYAH
Sbjct: 302 RLLSRHNLSNGLAAVAVGRSLGLEFGEIAKGIATFEGARRRFEFRGEAA-GITFIDDYAH 360

Query: 365 TSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             + +   L     +     R++ +F                 +   AD+ ++TD     
Sbjct: 361 HPSEIRATLAAASLQARPGQRVVAIFQPHRYSRTLTFLDQFAGSFAHADLVVLTDIYSAG 420

Query: 423 EDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E        E++  EI    P  I +          +  L   D+ +  G G+
Sbjct: 421 EADLGQISGEQLADEIAKQHPQVIYQPTLSSIRELLLSTLRPGDLALFLGAGN 473


>gi|221194726|ref|ZP_03567783.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
 gi|221185630|gb|EEE18020.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
          Length = 470

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 145/440 (32%), Gaps = 54/440 (12%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G +   GH            A +      +   S+ I    P ++            +++
Sbjct: 54  GIRVHIGH----------VAATIDEVQPDVVVTSSAIPETNPEVIRARELGLPIWPRAKM 103

Query: 110 YGKHPE--NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPS 166
                     +AV GT GK++ +S +  +  +     SF IG    +  +  + R  +  
Sbjct: 104 LSYLSRGRKTIAVAGTHGKTTTSSMIATMLDKMDLDPSFLIG--GVVEGYDTNGRNGSGD 161

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                             V     S G   +    +       TN+  DH+D++ T +  
Sbjct: 162 ----------------YFVCEADESDGSFMY----LTPNVIVITNIEADHLDHYGTLENI 201

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                  F  LL      II  D+ +    ++ A + G +V+S G+     ++ +     
Sbjct: 202 EKT-FCDFMRLLDPSETVIINGDNPH---WVELARSTGRKVVSYGFSETCDYVCRARMRT 257

Query: 287 NKQQVTISV---EGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              +  +SV    G   D + P  PG   + NA  A      +G D +     L +    
Sbjct: 258 QGIENPLSVTTPSGACIDVVLPASPGTHNIANACAALATADILGYDLSEAARALSQFKGA 317

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RF  VG +  G  +  DY H    ++  L     +   R+I VF             +
Sbjct: 318 RRRFTHVG-DICGITVVDDYGHHPTEIKATLSAALPLGFKRVICVFQPHRYSRTKDLADL 376

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHG--IPGFIEKGNRIEAIRTAIE 454
              A D  D  +V D     E P      + + + +     +       +R + + T  E
Sbjct: 377 FAHAFDGVDTLLVMDVFSAGELPIPGISGKTVSSHVKDAGKVSDVRYIPSRHKLVDTLCE 436

Query: 455 MLNKQDVLVVAGKGHETVHI 474
           +    D+++  G G  T  I
Sbjct: 437 LCRPGDLVITQGAGDVT-QI 455


>gi|119897176|ref|YP_932389.1| UDP-N-acetylmuramate--L-alanine ligase [Azoarcus sp. BH72]
 gi|166222953|sp|A1K3U7|MURC_AZOSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119669589|emb|CAL93502.1| probable UDP-N-acetylmuramate-L-alanine ligase [Azoarcus sp. BH72]
          Length = 467

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/432 (18%), Positives = 142/432 (32%), Gaps = 55/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      +   A+A+VVS+A    +          I +V   +  L+       G    
Sbjct: 56  GHD--AANVEA-ADALVVSTAVKNDNPEVIAARARHIPIVPRAQM-LAELMRLKSG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  I          + PT  I            +   L K   
Sbjct: 108 --IAIAGTHGKTTTTSLVASILAE-----GAMDPTFVIGG----RLNAAGANARLGKGDF 156

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++    +  S               +  +    TN+  DH+D +    A        F 
Sbjct: 157 LVAEADESDASFLM------------LSPVISVVTNIDADHMDTYGHDFARLKQAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV-TI 293
           + LP    A++  DD + + +M        +V+  G  +   I  + + A   +     +
Sbjct: 205 QRLPFYGVAVLCEDDPHVRSIMPLVSK---QVVRYGLSETANIRAENIRAEGGRMIFDVL 261

Query: 294 SVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            V G      D +  LPG   V NAL A  +   + +    +++ L +   V  RF+  G
Sbjct: 262 RVNGSTTRLADVVLNLPGLHNVRNALAAIAVATEVQVPDEAIVKALAEFSGVGRRFQRYG 321

Query: 351 T----NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                +     +  DY H    +E  L   R      R+++ F                 
Sbjct: 322 EVAAPSGGTFTLIDDYGHHPVEMEATLAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVK 381

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEML 456
            L   D  ++ +     E P  I A     +   +    ++E +         +  +E +
Sbjct: 382 VLSTVDALLLAEVYAAGEAP--IVAADGRALSRALRVAGKVEPVFVEDIGGMPQAVLEAV 439

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 440 RDGDVVITMGAG 451


>gi|90020496|ref|YP_526323.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
 gi|109892735|sp|Q21MG8|MURC_SACD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89950096|gb|ABD80111.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
          Length = 474

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 138/442 (31%), Gaps = 72/442 (16%)

Query: 57  HLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           H+FI        GA  +V SSA    +          I +V    + L       +G   
Sbjct: 62  HVFIGHHATNVDGASVVVNSSAVESGNPELMEAREKRIPIVRRA-EMLGELMRYRHG--- 117

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S +  I          I               +  S   L ++ 
Sbjct: 118 ---IAVAGTHGKTTTTSLISSILAAGKKDPTFI---------IGGLLNSAGSNAGLGESR 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++    +  S               ++ +    TN+  DH+D ++   +        F
Sbjct: 166 YLVAEADESDASFLH------------LQPMVSVVTNIDADHMDTYEGDFSKLKQTFIDF 213

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
              LP    A++  DD    E++     +   V++ G+          V    +K +  +
Sbjct: 214 LHNLPFYGLAVVCGDDPIVTELIPAISRS---VVTYGFNEDSDYRAFDVRQDGSKLRFKV 270

Query: 294 SVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +        +    +PG+  V NA  A  +     +D   +   L     V  RFE  G 
Sbjct: 271 ARPEGLATLELFLNMPGKHNVLNATAAVAVASEEKVDDDAIQNGLANFMGVGRRFEIYGE 330

Query: 352 NSRG----GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              G      +  DY H    +   +  +R      R+++V+                  
Sbjct: 331 FEVGAGPTAMLVDDYGHHPREVAATIAAVRDGWPDRRLVMVYQPHRYSRTRDLYEDFVEV 390

Query: 407 LDLADIAIVTDDNPRSEDP-------------------EKIRAEIIHGIPGFIEKGNRIE 447
           L   D  ++ +     EDP                   + I  E + G+P  I+      
Sbjct: 391 LSTVDQLVLLEVYSAGEDPIPGADSRHLSRTIRTRGVVDPIFVEGVEGVPAVIK------ 444

Query: 448 AIRTAIEMLNKQDVLVVAGKGH 469
                 +++   D+++  G G+
Sbjct: 445 ------DIVQPGDIIITQGAGN 460


>gi|15965928|ref|NP_386281.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium meliloti
           1021]
 gi|307308238|ref|ZP_07587947.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
 gi|307319705|ref|ZP_07599130.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|23821882|sp|Q92NM0|MURC_RHIME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15075197|emb|CAC46754.1| Probable UDP-N-acetylmuramate--alanine ligase [Sinorhizobium
           meliloti 1021]
 gi|306894636|gb|EFN25397.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|306901236|gb|EFN31842.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
          Length = 471

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 140/420 (33%), Gaps = 47/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKDNPELIAAREKFLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVAALLDAGGLDPTVING-GIINAYGTNARMGAGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++ +  A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGSFDAVRAA-FRQFVENVPFYGFGVLC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ +  +   +V++ G      +    +          I +  +        
Sbjct: 218 LDHPEVQSMVGKIEDR--KVVTYGENPQADVRFHNIRMDGATSIFDIEIRRRRTGQVIEI 275

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D   P+PG   V NA  A  +   +GI    +   L     V  RF   G    G RI+
Sbjct: 276 KDLRLPMPGRHNVSNATAAVAVAQRLGIKPEDIARGLATFGGVKRRFTLTG-EWNGARIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +L+  R    GRI+ V                    + AD  ++    
Sbjct: 335 DDYGHHPVEIRAVLRAAREACQGRIVAVHQPHRYSRLSSLFEDFTSCFNDADTILLAPVY 394

Query: 420 PRSEDP-EKIRAE-IIHGIPGFIEKGNR----IEAIRTAIE-MLNKQDVLVVAGKGHETV 472
              E+  E + +E ++  I     +  R     EA+   I  +    D +V+ G G  T 
Sbjct: 395 AAGEEAIEGVSSEALVDRIKAAGHRDARHVPGQEALAPVIAKIAQPGDFVVLLGAGSITY 454


>gi|153839043|ref|ZP_01991710.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|260363428|ref|ZP_05776276.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
 gi|31076799|sp|Q87SG3|MURC_VIBPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149747471|gb|EDM58419.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|308114671|gb|EFO52211.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
          Length = 485

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 157/448 (35%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVMAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK- 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+    
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSDDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  +G+ + D    +PG     NA  A  +     I+   +L+
Sbjct: 260 DVRIENYHQEGQQGKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +K  R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTIKAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                           L+  D+ I+ D     E P  I       +   I    +++ I 
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKVDPIF 437

Query: 451 T-AIEML--------NKQDVLVVAGKGH 469
              IE L           D+++  G G 
Sbjct: 438 VPEIEQLPSVLANVIQDGDLILTQGAGD 465


>gi|254520514|ref|ZP_05132570.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
 gi|226914263|gb|EEH99464.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 137/424 (32%), Gaps = 52/424 (12%)

Query: 67  GAEAIVVSSAYSLQD-----FSATIRSNTPILVVD--------NTRKFLSLFASRLYGKH 113
           GAE  +     +L+D     ++A I S+ P ++          +  +FL L         
Sbjct: 55  GAEIYIGHDKGNLKDVDLVVYTAAIPSDNPEIIEAKDKNIDLMDRAEFLGLIMKGHKYN- 113

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A++GT GK++  S +  +  ++ L    +            N     S  ++ +A
Sbjct: 114 ----VAISGTHGKTTCTSMLSHVTLKADLDPTIL--VGGELDVIDGNFKIGNSEYFITEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y  S    +                      G   N+  DH+DY++            
Sbjct: 168 CEYKESFLKFY-------------------PYIGVILNIDADHLDYYRDLNHIKET-FEK 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVT 292
           F  ++P +   I Y +D    E++ +A    C  +S G     +    +   +  +   T
Sbjct: 208 FSNIIPSDGYLIGYCEDENVNEILNKAK---CNTISYGINKGDVRATNISFDNKGRASFT 264

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +  + FD      G+  + NAL    + +   I    ++E L +      RFE+ G 
Sbjct: 265 VCKDNDELFDVTLNTTGKHNILNALSTICVGLIFNIPYTSIIEGLRECKGAHKRFEYKG- 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G  I  DYAH    ++  L     I    I  VF                      D
Sbjct: 324 EFNGATIIDDYAHHPVEIKATLDTATIIPHKNIYAVFQPHTYTRTKTLFEDFTECFSEVD 383

Query: 412 IAIVTDDNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             ++ D     E    I         I           +  +A      +++  D+++  
Sbjct: 384 ELLLMDIYAAREKDTGIVNSEQLGDAIRAKGIKCTNIHSHEQAANYLKNVVSNDDIILTI 443

Query: 466 GKGH 469
           G G 
Sbjct: 444 GAGD 447


>gi|87122626|ref|ZP_01078503.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
 gi|86162084|gb|EAQ63372.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
          Length = 478

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 140/427 (32%), Gaps = 46/427 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      +   A  IVVS+A ++++          I +V    + L+      +G    
Sbjct: 67  GHD--ASNVES-AHVIVVSTAINIENPEIKWGKENRIPIVRRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +   +G   +F IG   T +           S  YL    
Sbjct: 119 --IAVAGTHGKTTTTSLMASVLAATGDAPTFVIGGRLTSAG----TNAQLGSSKYLV--- 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++  +   TN+  DH+D +             F
Sbjct: 170 AEADESDASFL---------------HLQPHSAIVTNIDEDHMDTYGGDFEKVKHTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++ +          + ++  F     V      + V   
Sbjct: 215 LHNLPFYGMAVLCVDDENVREILPQVSRPIL-TYGIEHEADFYATDLVQTGRYCEFVAHR 273

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE----FVG 350
              +      P+PG+  V NAL    +   +G+++  +   L     V  RF+       
Sbjct: 274 PNLEPIRIRLPMPGKHNVLNALATIAVATDLGVEAVAIQAGLMGFEGVGRRFQEQSPLAL 333

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             S       DY H    +E+ +  IR      R+++++                  L  
Sbjct: 334 PKSGEVMFIDDYGHHPREVEVTIDAIRDGWPDKRLVMIYQPHRFSRTRDLYEDFVKVLSK 393

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D+ ++ D     E P        + A I   G    I  G   +       +L   D++
Sbjct: 394 VDVLLLLDVYAAGEAPVNGADSRALCASIRQRGAVDPIHVGKDEDLSSILANVLRDGDLM 453

Query: 463 VVAGKGH 469
           +  G G 
Sbjct: 454 ITQGAGD 460


>gi|28897235|ref|NP_796840.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28805444|dbj|BAC58724.1| UDP-N-acetylmuramate-alanine ligase [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 490

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 157/448 (35%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 67  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVMAARELRIPIVR 115

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 116 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 168

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 169 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 207

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK- 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+    
Sbjct: 208 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSDDA 264

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  +G+ + D    +PG     NA  A  +     I+   +L+
Sbjct: 265 DVRIENYHQEGQQGKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILK 324

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +K  R+     R++++F  
Sbjct: 325 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTIKAARSGWQDKRLVMIFQP 384

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                           L+  D+ I+ D     E P  I       +   I    +++ I 
Sbjct: 385 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKVDPIF 442

Query: 451 T-AIEML--------NKQDVLVVAGKGH 469
              IE L           D+++  G G 
Sbjct: 443 VPEIEQLPSVLANVIQDGDLILTQGAGD 470


>gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
 gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
          Length = 833

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 144/420 (34%), Gaps = 34/420 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQA 63
           L+ K    +I Q ++      ++ +  +  DSR +   +  ++ AI G   +GH F+ + 
Sbjct: 2   LVIKQIVPII-QATLVQQTQSDQAVYHLLLDSRKLYNPSQALYFAINGEHHNGHEFVAEL 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            A+G    V+      ++  A ++  N  IL V +    L   A+    ++   ++ VTG
Sbjct: 61  YARGVRNFVIE-----ENLPAHVKLPNANILKVTSAVNALQQVAAAHRNQYQIPVIGVTG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+ V  ++ ++               +  S+     +         +    +   G+
Sbjct: 116 SNGKTMVKEWLAKLLAE------DFKVVKSPKSYNSQTGVPLSVWQMNKRHTMGIFEAGI 169

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +  +   +   + Q          G FTNLG  H +    +   F  K +LFE       
Sbjct: 170 SAKNEMTALQKVIQ-------PSIGIFTNLGTAHDEGFDNRTQKFAEKWKLFEHC----K 218

Query: 243 PAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKD 299
             +  A+    Y   V K + +          Q +   L K   +  +Q    +  +G++
Sbjct: 219 AVVCCAEHLQTYHDIVTKTSFSGQPFTWGKNEQAQLRLLDKQTHLTQQQTQLKVQYQGEN 278

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P   E  V N L        +G+    +   + +L  V  R E          I 
Sbjct: 279 HFIQAPFIDEASVENILHCVATMCLLGLSFDKIQRRIARLRPVSMRLELKRGMRNTYLID 338

Query: 360 VDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAI 414
             Y +    L++ L  + T     + IVV             +   IA        D  I
Sbjct: 339 DSYNNDLAGLKIALDFMSTQDVNLQKIVVLSDMLQSGLPPEKLYQAIAQLLQSKAIDRVI 398


>gi|15827435|ref|NP_301698.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae TN]
 gi|221229912|ref|YP_002503328.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae
           Br4923]
 gi|13431702|sp|P57994|MURC_MYCLE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766014|sp|B8ZQQ1|MURC_MYCLB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13092985|emb|CAC31296.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae]
 gi|219933019|emb|CAR71010.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae Br4923]
          Length = 495

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/434 (21%), Positives = 137/434 (31%), Gaps = 70/434 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A++             I    P LV    R    L  S +  +  +    L V GT 
Sbjct: 73  GATAVIT--------IRTAIPKTNPELVEARRRGIPVLLRSAVLARLMDGCTTLMVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           GK++  S +    Q  G     +  G  + + + A                       G 
Sbjct: 125 GKTTTTSMLVVALQHCGCDPSFVVGGELAVVGTNAHHGL-------------------GA 165

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V+    S G                TN+  DH+D++ +  AY       F E      
Sbjct: 166 CFVAEADESDGSLLEYT----PNVAVVTNIDSDHLDFYGSVDAYIRV-FDSFVERFALGG 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-------VTISV 295
             ++  DD  +  + +R    G RVL  G   +         +  +QQ       + ++ 
Sbjct: 221 ALVVCNDDPGAAALARRTAELGIRVLRYGSDDRIGETLAARLLSWEQQGTGAVAHIQLAG 280

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +        P+PG     NAL A    I IG  +  VL+ L     V  RFE VGT+  G
Sbjct: 281 QPNSRVMRLPVPGRHMALNALGALLAAIEIGASTDEVLDGLAGFRGVRRRFELVGTSGVG 340

Query: 356 ------GRIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKI 405
                  R++ DYAH    +   L   R +      GR IVVF                 
Sbjct: 341 QASNSLVRVFDDYAHHPTEISATLAAFRIMLEQSGGGRCIVVFQPHLYSRTKALSREFGR 400

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEM 455
           AL  AD   +   N   E P       + G+ G     +    +R               
Sbjct: 401 ALSAADEVFIVGVNGAREQP-------LAGVSGASVAKHVSVPVRYIPDYSAVVIEVAAA 453

Query: 456 LNKQDVLVVAGKGH 469
               DV+V  G G 
Sbjct: 454 AGPGDVIVTMGIGD 467


>gi|325265594|ref|ZP_08132285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
 gi|324982942|gb|EGC18563.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
          Length = 445

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 143/362 (39%), Gaps = 42/362 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++ A  L  + P+ I+A+TG++GK++  S V  +C + GL +   G   T    A   R 
Sbjct: 97  AILADLLS-RQPDKIIAITGSNGKTTTTSLVGHLCAQCGLDTVVAGNIGTPVLEAWLARK 155

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
             P                     +E SS  L+   L  +   A +  N+  DH+D +  
Sbjct: 156 GKP----------------ADVWVLELSSFQLETTPL--LDADAAACLNISEDHLDRYDD 197

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y  AK  +F      ++  ++ ADDA+ + + +         L    Q +  H +  
Sbjct: 198 LLDYARAKDMIFNG----KAVQVLNADDAFCRAMKRDGRTVHYFSL---QQPQDYHWQAG 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               + Q+V +  +        PL G   + N L A  LC +IG+    +L H++    +
Sbjct: 251 AGSLHHQEVLLMPQ-----TDIPLQGSHNMANVLAALALCESIGLPRDRLLAHVKTFKGL 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E VG   + G  ++D +  +N +   +  I  +     ++  G G  +D    P+ 
Sbjct: 306 PHRVEKVGE--KNGITFIDDSKGTN-VGATVAAIAGLPEKIWLIAGGMGKGQDFT--PLR 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      + ++  D P      KI A++       +      EA++ A       D++
Sbjct: 361 DVLREKAGAVFLIGVDAP------KIAADLDGCGVDLVFCETLPEAVQAAFARAQSGDIV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074270|gb|ADJ63669.1| cyanophycin synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 140/376 (37%), Gaps = 34/376 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AV GT+GK++    +  +  ++GL    +G T+T   +    R  T        A +
Sbjct: 471 PVVAVAGTNGKTTTVRLITHLLAKTGLR---VGMTNTDGVYIDGQRTDTGDCSGPRSARN 527

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID--YHQTQQAYFNAKMR 232
            L    V    +E +  G+ +  L   +      TN+G  DH+   Y  T +     K  
Sbjct: 528 VLFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAVVKRV 587

Query: 233 LFEELLPKESPAIIYADDAYSKEV------------MKRAHNAGCRVLSVGYQGKFIHLK 280
           + E + P    A++ A D    ++            +   H       + G++  +    
Sbjct: 588 IVENVAPT-GTAVLNAADPMVAKMAASCPGAVTFFALDPTHPIMATHRAQGHRIVYRDGD 646

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            + A     +  + + G            FQV N + + G   A+ +D   +   L    
Sbjct: 647 AIVAAQGSFEKRLKLSG--IPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGALASFI 704

Query: 341 ----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 PGRF     + +G  +  DY H  ++++ ++K + ++ + R  VV    GDR  
Sbjct: 705 SDSGTAPGRFNLF--DYKGATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGAGDRRD 762

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIE------AI 449
                  ++  D  D  ++  D   R  +  ++ A +  G+       +  E      AI
Sbjct: 763 VDITRQTELLGDAFDEVVLYQDQCQRGREDGEVIALLRQGLSKASRTSDVKEINGEFLAI 822

Query: 450 RTAIEMLNKQDVLVVA 465
            TA+  L   D+ ++ 
Sbjct: 823 DTALGSLQPGDLCLIL 838


>gi|293391359|ref|ZP_06635693.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951893|gb|EFE02012.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 497

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 140/445 (31%), Gaps = 56/445 (12%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILV 94
           R I+AG  +F+        GH           GA  +V+SSA    +       +  I V
Sbjct: 79  RLIKAGANVFI--------GHQ-----AENIVGASVVVISSAIHGDNPEVMAAKDARIPV 125

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           +   +  L+      +G      +AV GT GK++  + V  I   +GL    +      S
Sbjct: 126 IQRAQM-LAELMRFRHG------IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKS 178

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           +    +   +         ++       + +                ++ +    TN+  
Sbjct: 179 AGTNAHLGCS------RYLIAEADESDASFL---------------HLQPMISIVTNIEP 217

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D +             F   LP    A++ ADD    E++                 
Sbjct: 218 DHMDTYHGDFDEMKQTYVNFLHNLPFYGLAVLCADDEVLMELVP-LVGRQVITYGFSENA 276

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +                I   G+  D L  +PG     NA  A  +    GI +  +L 
Sbjct: 277 DYRIEDYQQTGFQGHYTVICPNGERIDVLLNVPGRHNALNATAALVVAKEEGIKNDAILA 336

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGC 390
            L        RF+ +G     +    +  DY H    + + ++  R     + IV +F  
Sbjct: 337 ALADFQGAGRRFDQLGQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIFQP 396

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKG 443
                           L   D+ I+ D  P  E P      + +   I + G    I   
Sbjct: 397 HRYSRTRDLFDDFVQVLSQVDVLIMLDVYPAGEAPIVGADSKALCRSIRNLGKVDPILVS 456

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  +      +++   D+++  G G
Sbjct: 457 DTEQLGEVLDQIIQDGDLILAQGAG 481


>gi|269960242|ref|ZP_06174617.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
 gi|269835049|gb|EEZ89133.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
          Length = 485

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 155/448 (34%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVMAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGK 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+    
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFADDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  EG+ + D    +PG     NA  A  +     I    +L+
Sbjct: 260 DVRIENYHQEGQQGKFTVVREGRANLDITLNIPGRHNALNASAAIAVATEDDISDEAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +   R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                           L+  D+ I+ D     E P  I       +   I    +++ I 
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAAGEKP--IAGADGRALCRTIRSRGKVDPIF 437

Query: 451 T-AIEML--------NKQDVLVVAGKGH 469
              IE L           D+++  G G 
Sbjct: 438 VPEIEQLPSVLANVIQDGDLILTQGAGD 465


>gi|189029216|sp|Q24ZG1|MURC_DESHY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 449

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 148/422 (35%), Gaps = 46/422 (10%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F    + + A+ +V S+AY  ++     R+    + V +  +FL    S+  G      
Sbjct: 54  NFSAANVEK-ADIVVASAAYG-ENHEEIARARELNIPVYSYPQFLGRLMSKKRG------ 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++  + +     +SG     I PT  + S          S           
Sbjct: 106 IAVAGTHGKTTTTAMIGLALLQSG-----IDPTIVVGSDVPSIGGNAYSGQG-------- 152

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                      A S    +H L+         TN+  DH DY +       A   +  + 
Sbjct: 153 -------DFFLAESCEYRRHFLNY-SPEYLIITNIEFDHPDYFKDLDDVVCAFSEI-AQK 203

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           +P      I+ +D   K +  ++      +++ G  +   ++   +        +TI   
Sbjct: 204 IPPHGRIFIWHEDPQRKAIQAQSP-----IITFGLNEEADVYATNIQFHDEGSTMTIVAH 258

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G    +F   + G+  + NAL +  LC+ IG+ +  VLE L   +    RFE +G N+ G
Sbjct: 259 GTVLGEFHLHVSGKHNILNALASIALCLEIGVPTEKVLESLSHFNGTKRRFEHIGQNA-G 317

Query: 356 GRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    +   L+    +    RI  VF         K       +   AD  +
Sbjct: 318 ALIVDDYAHHPTEIRSTLEGARLSFPDRRIRAVFQPHTFSRTEKLLQEFSQSFQAADEVV 377

Query: 415 VTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + +        N  +     +   I           +  E      + L+  D+++  G 
Sbjct: 378 IAEIFASARETNLNTISASSLADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLTLGA 437

Query: 468 GH 469
           G 
Sbjct: 438 GD 439


>gi|154245140|ref|YP_001416098.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthobacter autotrophicus
           Py2]
 gi|229620439|sp|A7IEJ8|MURC_XANP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154159225|gb|ABS66441.1| UDP-N-acetylmuramate--alanine ligase [Xanthobacter autotrophicus
           Py2]
          Length = 470

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 142/404 (35%), Gaps = 50/404 (12%)

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
           I+ + P LV   T++   +  + +  +     + +++ GT GK++  S V  +   +G  
Sbjct: 76  IKRDNPELVAARTKRLPVVRRAEMLAELMRLKSCVSIAGTHGKTTTTSMVAALLD-AGNF 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              +     I+++  + RL   + + +    S                          + 
Sbjct: 135 DPTVINGGIINAYGTNARLGDGNWMVVEADESD--------------------GTFLKLP 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  +H+D+ +T     +A  + F E +P    A++  D    + ++ R  + 
Sbjct: 175 TEVAIVTNVDPEHLDHFKTFDKVQDA-FKTFVENVPFYGFAVMCIDHPVVQALVGRIEDR 233

Query: 264 GCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD-------FLFPLPGEFQVYNA 315
             RV++ G      + L  V       +  +    +  +          P+PG+    NA
Sbjct: 234 --RVITYGENPQADVRLVDVDLKGGITRFGVVFRNRAGETVHEISGLKLPMPGKHNALNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   + +    ++E +     V  RF   G    G  ++ DY H    +  +LK 
Sbjct: 292 TAAIAVAHELKVPDDKIIEAIANFGGVKRRFTRTG-EWNGVTVFDDYGHHPVEIAAVLKA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R  + G++I V                    + AD  +V       E P +  A+  H 
Sbjct: 351 ARAASEGQVIAVVQPHRYSRLASLFDEFCTCFNDADHVVVAPVYAAGETPIE-GADRDHL 409

Query: 436 IPGFIEKGNRIEAIRTAIE-----------MLNKQDVLVVAGKG 468
           + G I  G+R     TA+E           +    D ++  G G
Sbjct: 410 VQGLIAHGHRSV---TALEGPERLAQVVGGLAKPGDYVICLGAG 450


>gi|182420305|ref|ZP_02951534.1| cyanophycin synthetase [Clostridium butyricum 5521]
 gi|237666435|ref|ZP_04526420.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182375900|gb|EDT73492.1| cyanophycin synthetase [Clostridium butyricum 5521]
 gi|237657634|gb|EEP55189.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 869

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 138/357 (38%), Gaps = 30/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  + +  G+++   G TST   +  D  +          A + L ++ V  V +E + 
Sbjct: 495 MIGHVLKMMGMTT---GITSTDGIYINDKCIHKGDDSGFNSAKTLLLNRDVEAVVLETAR 551

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L          TN+  DH  +D   + +     K  L  E + K    +I AD
Sbjct: 552 GGLVRRGLAYDLADVAVITNITNDHLGLDGIDSMEDLMFVKS-LVGEEVKKNGYTVINAD 610

Query: 250 DAYSKEVMKRAHNAGCRV------------LSVGYQGKFIHLKKVCAI-HNKQQVTISVE 296
           D YSK ++ R                    ++ G    FI    +C I ++++ + IS++
Sbjct: 611 DKYSKRILDRISCEKIYFSKSKDNELIKENINNGKIAVFIEDNNICVINNHRKYLIISID 670

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRG 355
             +    +     + + NA+ A    + + ID  ++ +              F      G
Sbjct: 671 --ELPISYNGILTYNIENAMAACAALVGLNIDYCMISKGFSDFMPCDDNEGRFNMFEYYG 728

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            ++ +DY H     + +L  I  + T  R+I V G  GDR       +G+I  +  D  I
Sbjct: 729 RKVILDYGHNIEGYKAVLSCINKLKTKNRLIGVVGVPGDRQDNVIKEIGEICCEYLDEII 788

Query: 415 VTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +D + R     ++   +   I             + ++A+  AI++  K D+++V
Sbjct: 789 IKEDKDRRGRSIGEVSQLLKISILKNSNKKNVKVYLDEVDALEYAIKISKKDDIIIV 845


>gi|29828747|ref|NP_823381.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces avermitilis
           MA-4680]
 gi|44888190|sp|Q82L07|MURC_STRAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29605851|dbj|BAC69916.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           avermitilis MA-4680]
          Length = 464

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/430 (21%), Positives = 150/430 (34%), Gaps = 41/430 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    + +A  A  +VVSSA    +      +   I VV  +   L+     L
Sbjct: 54  GATVHIGH--AAEHLADDATCVVVSSAIRADNPELARAAELGIPVVHRS-DALARLMDGL 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                   +AV GT GK++  S +       GL+           S+A    L  P    
Sbjct: 111 ------RPIAVAGTHGKTTTTSMLAVSLSTLGLAP----------SYAIGGDLDAPGSNA 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L                 + S H                  N+  DH   + +      A
Sbjct: 155 LHGEGDIFV---AEADESDRSFHKY--------APDVAIVLNVELDHHANYASMDEI-YA 202

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNK 288
               F + + +    +I AD   ++E+ +R   +G RV++ G      + +  V A   K
Sbjct: 203 SFETFVDRITEGGTLVIAADHEGARELTRRVTASGVRVVTYGESADADVCVLSVTAQGLK 262

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +V + ++G +  F   +PG    +NA+ A    +A+GI +A +   L     V  R + 
Sbjct: 263 SEVEVLLDGTELTFTVSVPGRHYAHNAVAALAAGVALGIPAADLASALAAYTGVKRRLQL 322

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIAL 407
            G  + G ++   YAH    +   L+ +R       I VVF         +       AL
Sbjct: 323 KGEEA-GVQVIDSYAHHPTEMTADLEAMRAAAGDARILVVFQPHLFSRTQELGKEMGQAL 381

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            LAD ++V D  P  EDP      E I               ++ E       M    D+
Sbjct: 382 ALADASVVLDIYPAREDPIPGITSELIIEAARAAGADVTPVHDKAEVPSVIAGMARPGDL 441

Query: 462 LVVAGKGHET 471
           ++  G G  T
Sbjct: 442 VLTMGAGDVT 451


>gi|145588855|ref|YP_001155452.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047261|gb|ABP33888.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 856

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 137/374 (36%), Gaps = 29/374 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTGT+GK++    +  +   +GL    +G T T   +     + T        A +
Sbjct: 471 PVVAVTGTNGKTTTVRLISHLLTETGLR---VGMTGTDGVYINHRAIDTGDCSGPKSARN 527

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YHQTQQAYFNAKMR 232
            L    V    +E +  GL +  L   +      TN+G  DH+   Y  + +     K  
Sbjct: 528 VLMHPDVDAAVLETARGGLLREGLGFDRCEVAVVTNIGEGDHLGLNYITSVEDLAILKRV 587

Query: 233 LFEELLPKESPAIIYAD-------DAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKV 282
           + + + P  +  +  AD       D  S  V+  A N    V++           +    
Sbjct: 588 IVQNVAPTGAAVLNAADPMVAKMGDKCSGRVIFFAQNQHHPVITAHRAKNKKVIYNDGTY 647

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL--- 339
                  +V       +          FQV NA+ A G   A+G+D+  +   L      
Sbjct: 648 IVASKGSRVMYRFPVSEIPLTQNGVLGFQVENAMAAIGAAWALGLDAEKIARGLNSFEST 707

Query: 340 -HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
            + VPGRF     N  G  +  DY H  +++  +   I  +   +  VV    GDR    
Sbjct: 708 ANSVPGRFNQFQHN--GATVIADYGHNPDAMRALASAITAMKPKQSHVVISGAGDRRDED 765

Query: 399 RPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRT 451
              + +I  +  D  I+  D   R  +  ++   +  G+ G  +     E      AI T
Sbjct: 766 IRDLTRILGNSFDNIILYQDACQRGREDGEVLKLLQEGLVGATKAKQVKEIHGEFLAIDT 825

Query: 452 AIEMLNKQDVLVVA 465
           A+  ++  D+ ++ 
Sbjct: 826 ALNDISAGDICLIL 839


>gi|218674669|ref|ZP_03524338.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli GR56]
          Length = 471

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 141/418 (33%), Gaps = 51/418 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLEAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++ +  A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVITNIDPEHLDHYGSFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ R  +   ++++ G      +  K V     +    + +  +        
Sbjct: 218 LDHPEVQSLVGRIEDR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTEL 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+
Sbjct: 276 KGLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L+  R    GRII V                    + AD   +    
Sbjct: 335 DDYGHHPVEIKAVLRAAREACKGRIIAVHQPHRYSRLASLFEEFAACFNDADSIFLAPVY 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKG 468
              ED   I       +   I+ G   +A          +   E+    D +V+ G G
Sbjct: 395 AAGED--AIEGADSTSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|158321131|ref|YP_001513638.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158141330|gb|ABW19642.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 882

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 135/357 (37%), Gaps = 29/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + +I +   +++  +G TST   +  +  +          A   L  + +    +E + 
Sbjct: 497 MIAKILK---MNNMVVGMTSTGGVYIDNELIVKGDTTGPRSAEIVLMDKHIDIAVLETAR 553

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+    L       G  TN+  DH+  D   T +   + K  + E + P E  AII A+
Sbjct: 554 GGIVNKGLGYDLADVGLVTNIDDDHMGIDGINTLEDMADVKSLVLEAIKP-EGYAIINAE 612

Query: 250 DAYSKEVMKRAHNAGCRVL------------SVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           D +++ + +RA                      G +  ++  KK+C     +++ + +E 
Sbjct: 613 DTFARRMAERARGNIVYFSQCDTNELIIEHKKQGKKAIYLKEKKICIFDGNKEIDV-IEI 671

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--VVPGRFEFVGTNSRG 355
           +          E  + N+L A     A+G+D   + E L   H   V     F       
Sbjct: 672 EKIPATLGGILEHNIENSLCAVAATFALGVDIHRIYEGLRDFHTDAVHNMGRFNVFEVAN 731

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ +DY H       +L  +  + + R+I V G  GDR       +G+++    D   +
Sbjct: 732 FKVILDYGHNIGGYNRVLNGLNKMKANRLIGVIGVPGDRTDISILKIGELSGKYFDQVYI 791

Query: 416 TDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +D + R  +  ++   I  G             + +   A+  A++   + D+++V
Sbjct: 792 KEDRDLRGRNVGQVAELIKKGCILGKLSEQQITTELDERVALEKAMKNAKEGDIIIV 848


>gi|91791723|ref|YP_561374.1| UDP-N-acetylmuramate--alanine ligase [Shewanella denitrificans
           OS217]
 gi|123166539|sp|Q12SC5|MURC_SHEDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91713725|gb|ABE53651.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella denitrificans
           OS217]
          Length = 479

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 142/429 (33%), Gaps = 50/429 (11%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
           I+ GA+ I+   A S++          I    P ++    R+        + A  +  +H
Sbjct: 62  ISLGAKVIIGHHADSVEHADVVVVSTAINHENPEIIAAKERRIPIVRRAEMLAELMRYRH 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  S +  +  ++        PT  I                    
Sbjct: 122 G---VAIAGTHGKTTTTSLIASVYAQAQRD-----PTFVIGGLLNSAGTNARLGTSRY-L 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 173 IAEADESDASFL---------------HLQPMVSVITNIEADHMDTYGGDFEKLKTTFVD 217

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++  DD  ++E+M R                   L      H  Q V  
Sbjct: 218 FLHNLPFYGVAVMCIDDEINREIMPRV-GRQIVTYGFSQDADVQALNFNQIGHQSQFVVR 276

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
             + +D   +  LPGE  V NAL A  +     ID   +++ L +   +  RF+ +G   
Sbjct: 277 RKDKEDLALVLNLPGEHNVLNALAAIAVASEDDIDDESIVKALAEFEGIGRRFQHLGEFN 336

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T +    +  DY H  + +   +K  R      R+++ +                  L  
Sbjct: 337 TANGQVMLVDDYGHHPSEVLATIKAARAGWPDKRLVMAYQPHRYSRTRDLYDDFVEVLSQ 396

Query: 410 ADIAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQD 460
            D  ++ D     E   P      +   I       P F+   +++ ++    ++L   D
Sbjct: 397 VDCLLLLDVYSAGEAAIPGADGRALCRSIRLRGQIDPIFVASPDQLASVLP--DVLQAGD 454

Query: 461 VLVVAGKGH 469
           +L+  G G+
Sbjct: 455 LLLTQGAGN 463


>gi|220927180|ref|YP_002502482.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium nodulans
           ORS 2060]
 gi|254766011|sp|B8IN63|MURC_METNO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219951787|gb|ACL62179.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium nodulans ORS
           2060]
          Length = 471

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/417 (18%), Positives = 142/417 (34%), Gaps = 47/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +    +     + VV        L   +         +AV GT GK+
Sbjct: 67  AELVVVSTAIRRDNPELALARERRLPVVRRAEMLAELMRFKSC-------VAVAGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLDAGGLDPTVING-GIINAYGTNARMGEGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D+  +  A  +A  R F + +P    A++ 
Sbjct: 168 ---------GTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDA-FRAFIDNIPFYGFAVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD------- 299
            D    ++++ R  +   R+++ G      + L  V     + +  + +  +        
Sbjct: 218 IDHPTVQDLVGRIEDR--RIVTYGENPQADVRLIDVDLKGGQSRFRVMIRDRRPGFRLEM 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + P+PG+    NA  A  +   +G+    +   L     V  RF   G    G +I+
Sbjct: 276 EDLVLPMPGKHNALNATAALAVAHELGVSPEAIRRALAGFGGVKRRFTRTGEW-NGAQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +LK  R  T GR++ V                    + AD  IV    
Sbjct: 335 DDYGHHPVEIKAVLKAARASTEGRVVAVVQPHRYTRLASLFDDFCTCFNDADTVIVAPVY 394

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
              E P      + + A +            R E +   I  +    D +V  G G+
Sbjct: 395 AAGEAPIEGFDRDALVAGLKSRGHRNAVALERSEDLAAMISGLAGPGDYVVCLGAGN 451


>gi|258546154|ref|ZP_05706388.1| UDP-N-acetylmuramate--alanine ligase [Cardiobacterium hominis ATCC
           15826]
 gi|258518579|gb|EEV87438.1| UDP-N-acetylmuramate--alanine ligase [Cardiobacterium hominis ATCC
           15826]
          Length = 479

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 150/450 (33%), Gaps = 62/450 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R    G  +F         GH    + +   A  +V SSA   ++          I V+ 
Sbjct: 58  RLAAKGATLFF--------GH--AAENVKD-ASVVVTSSAIDPKNPEVLRARELGIPVIR 106

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISS 155
              + L+      +G      +AV GT GK++  S +  I   +G   +F IG   T + 
Sbjct: 107 RA-EMLAELMRFRFG------IAVAGTHGKTTTTSLIASILADAGLDPTFVIGGVLTAAG 159

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
               +        YL    +       + +                ++ +    TN+  D
Sbjct: 160 ----SNARLGDGQYLV---AEADESDASFL---------------HLQPMMSVVTNIDAD 197

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QG 274
           H++ +             F   LP    A++  DD   + ++    + G  V + G+ + 
Sbjct: 198 HLENYGGSFDNLKQGFVRFLHNLPFYGLAVLCIDDEGVQSIL---GDVGRPVRTYGFSEA 254

Query: 275 KFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +    V  +  K    +   V G+ F     +PG+  V NAL A  +   +G+  A +
Sbjct: 255 AEVRAVNVRQVGLKMHFDVVDKVSGETFPLALSMPGKHNVLNALAAFIITSELGLTRAEI 314

Query: 333 LEHLEKLHVVPGRFE---FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVF 388
              L +   V  RF     +        ++ DY H  N +  +L+      +GR I  VF
Sbjct: 315 TAGLAQFKGVGRRFTHHGIIEHEHGRAEVFEDYGHHPNEIRAVLQAAAEGFAGRRIFAVF 374

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIE 441
                             L   +  ++TD     E P        +   I  HG    + 
Sbjct: 375 QPHRFTRTRDCLDDFAEVLSNCEALVLTDVYSAGEAPIAGADSRALARAIRAHGKVEPVL 434

Query: 442 KGNRIEAIRTAI--EMLNKQDVLVVAGKGH 469
             +   AI   +   +L   DV++  G G 
Sbjct: 435 IAD-KAAINQQLYDNLLADGDVVIYFGAGD 463


>gi|188584697|ref|YP_001916242.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349384|gb|ACB83654.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 894

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 141/380 (37%), Gaps = 39/380 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +++VTGT+GK++    +  I + +G     +G TS+  +F +   + +        A 
Sbjct: 484 APVISVTGTNGKTTTVRAIDHILRSNGKD---VGMTSSDGTFIKGELIDSGDNTGPNSAK 540

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMR 232
           + L    +     E +  GL ++ L          TN+  DH+  D  ++       K  
Sbjct: 541 ALLKDPTIDSFVFETARGGLVKNGLGYSNAKVAVVTNIANDHLGQDGIESIDDLIFVKS- 599

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----CAIHN 287
           L  E + K+   ++ A D Y  + +++A     R++    +    ++K        A++ 
Sbjct: 600 LVVEAVEKQGVVVLNASDHYVSDFIRKAKG---RIIFYAMESDNHYVKSHLAAGGSALYL 656

Query: 288 KQQVTISVEGK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            Q   +   GK                      + N +      I  GI  +   E L++
Sbjct: 657 DQDNIVYATGKFHRKLGEITQLPLTMAGMARHNIENCMAGIAAAIGFGIAPSKAFEVLKQ 716

Query: 339 LHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
                   PGR        +G  + +DY H    +  +L  +  +   ++I V G  GDR
Sbjct: 717 FAPSYQDTPGRCNLF--RCQGKTVLLDYGHNPEGMNRVLAMVEKMPVEKVISVIGVPGDR 774

Query: 395 DQGKRPIMGKIALDLADIA----IVTDDNPRSEDPEKIRAEIIHGIPGFIEK------GN 444
           +       GK+     ++     +  D + R     +    +   +  F E+        
Sbjct: 775 NDKLIKETGKVVGKYHELIEKVLVKEDSDLRGRKSGETANLLQTTMTEFSEELAVEQNLQ 834

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
            IEAI+TA+    + D++++
Sbjct: 835 EIEAIKTALSEAGENDLVLI 854


>gi|289422422|ref|ZP_06424265.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156994|gb|EFD05616.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus
           anaerobius 653-L]
          Length = 451

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 156/454 (34%), Gaps = 66/454 (14%)

Query: 47  VAI-VGNKEDGHL----F-IPQAIAQGAEAIVVSSAYSLQD------FSATIRSNTPILV 94
           + I  G K  G      + I    + GA+ ++     ++ D      ++A I ++     
Sbjct: 19  ICINKGYKVTGSDMQDSYLIDHLRSLGAKVVIGQKKENITDDINMVIYTAAISNDNEEFQ 78

Query: 95  VDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GP 149
               +  L +  +   G+      N +AV+GT GK+S  S +  I   +      +  G 
Sbjct: 79  AAKEKNILMINRAAFLGQIMREYKNSIAVSGTHGKTSTTSMLSTIFNHAEKDPTILVGGN 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            STI      N     S  ++ +A  Y+ S                              
Sbjct: 139 LSTIGG----NVRIGNSEHFITEACEYVDSF-------------------LNFNPFISLV 175

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+  DH+DY         A    F +LLP++   II  D   +K++     +    V+ 
Sbjct: 176 LNIEEDHLDYFSGLDEI-KASFNKFGKLLPEDGFFIINGDSENTKDI---TFDVKASVIR 231

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G +     +    +         +++ K      F   + G   VYNA  A    I   
Sbjct: 232 FGQKDTNDAIISDISYDENGYARFNLKYKGAALGRFDLSIYGLHNVYNATAAIVAAIVSN 291

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ID   + E +++   V  RFE  G   +G  +  DYAH    ++  L + + +   ++ V
Sbjct: 292 IDIDTIKEGIKEYKGVGRRFEKKG-EYKGALVIDDYAHHPTEIKATLASAKNLKKDKMWV 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIRAEIIH----------- 434
           VF                 A   AD  IV D     E DP  I ++++            
Sbjct: 351 VFQPHTYTRTKALFDEFSQAFHAADKVIVADIYAAREQDPGDINSKMLVESLYTNHVDAI 410

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +P F +  N         E +   D+++  G G
Sbjct: 411 YLPSFDDITN------YLRENVGPNDMVITCGAG 438


>gi|297156474|gb|ADI06186.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 476

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 90/438 (20%), Positives = 149/438 (34%), Gaps = 52/438 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH    + +A  A ++VVSSA      + +A      P++   +    L   A 
Sbjct: 56  GVTVHIGH--AAEHLAADATSVVVSSAIRADNAELTAAAERGIPVIHRSDALAGLMDGA- 112

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPS 166
                     +AV GT GK++  S +       G   S+ IG                  
Sbjct: 113 --------RPIAVAGTHGKTTTTSMLAVSLTTLGLDPSYAIG------------------ 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L    S     G      EA       H+            N+  DH   + + +  
Sbjct: 147 -GDLDAPGSNAQHGGGEIFVAEADESDRSFHKYA---PEVAIILNVELDHHANYASMEEI 202

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQ-GKFIHLKKVCA 284
             +  + F E +      ++ AD   ++E+  R       RVL+ G   G  + +  +  
Sbjct: 203 HES-FQTFVERIRPGGTLVVSADHPGARELTGRVTGREGLRVLTYGEDPGADVRVLDIAQ 261

Query: 285 IHNKQQVTISVE----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                +VT+ +     G +  F   +PG     NA+ A     A+G+ +  +   L    
Sbjct: 262 RGLTSEVTVLLPDALGGGELTFTVSVPGRHYALNAVAALTAGAALGVPARELAPALGSYT 321

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKR 399
            V  R +  G  + G ++   YAH    +   L+ IR     GR++VVF         + 
Sbjct: 322 GVRRRLQLKGVAA-GVQVIDSYAHHPTEISADLEAIRGGAGDGRVLVVFQPHLFSRTREL 380

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            +    AL LAD ++V D  P  EDP        I           + + +R        
Sbjct: 381 GVEMGQALALADASVVLDIYPAREDPVPGITSALIIDAAARHGADVVAEHDRTAVPELIA 440

Query: 454 EMLNKQDVLVVAGKGHET 471
            M    D+++  G G  T
Sbjct: 441 GMAKPGDLVLTMGAGDVT 458


>gi|309798583|ref|ZP_07692858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
 gi|308117819|gb|EFO55220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
          Length = 189

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 5/191 (2%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G F   NA+ A   C+ +G     + + +     VPGR E V T   G ++++DYAH 
Sbjct: 1   MIGHFNQENAIAAGLACLRLGASLEDIKKGIAS-TRVPGRME-VLTQKNGAKVFIDYAHN 58

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424
            +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D+P  ED
Sbjct: 59  GDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYED 118

Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKM 482
           P  I  EI   I   +E   +R +AI+ A+ + +++ D +++AGKG +   I+   ++  
Sbjct: 119 PMAIADEISSYIHHPVEKIADREQAIKAAMSVTDQELDAVIIAGKGADCYQIIQGKKEDY 178

Query: 483 SVDCDIIREIL 493
             D  I    L
Sbjct: 179 PGDAAIAERYL 189


>gi|313673682|ref|YP_004051793.1| UDP-N-acetylmuramate--l-alanine ligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940438|gb|ADR19630.1| UDP-N-acetylmuramate--L-alanine ligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 460

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 122/369 (33%), Gaps = 37/369 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V SSA    +          I V+        L   +         + V+G+ GK++ +
Sbjct: 68  VVYSSAVKQDNPELKYALENYIPVIQRGEMLAELMRMKYS-------VVVSGSHGKTTTS 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + +I   +G     + PT  I      N              + +    +     + S
Sbjct: 121 SMIAEIFNSAG-----LNPTVVIGGRLNRNENN-----------AIVGKSDIMVAEADES 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +       TN+  +H++ ++       +    F   +P     II  DD
Sbjct: 165 DRSFLM-----LYPTVSVITNIDFEHMESYKDFDDVKQSFAE-FANKVPFYGANIICLDD 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
               +++        + ++ G+  +  I    V          +SV GK +      +PG
Sbjct: 219 PNVADIIPLLKK---KFVTYGFSARADIRGTDVKIEGFGSSFNVSVHGKPWGRIKLSVPG 275

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  V NAL A G  +   I    + + LE    V  R           ++  DY H    
Sbjct: 276 EHNVLNALGAIGAGLEFDIPYEDIKKGLEDFSGVQRRLTIRYDKDE-IKVIDDYGHHPTE 334

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-E 426
           +   LK IR      ++IV+F                 A   AD   +TD    SE P +
Sbjct: 335 IIATLKAIRDAYDDHKLIVIFQPHRYSRTKLLMNEFSKAFFDADELFITDIYAASEKPID 394

Query: 427 KIRAEIIHG 435
            I ++++ G
Sbjct: 395 GITSDVLVG 403


>gi|170781769|ref|YP_001710101.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189028984|sp|B0RIJ4|MURC_CLAMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169156337|emb|CAQ01485.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 476

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 89/455 (19%), Positives = 148/455 (32%), Gaps = 59/455 (12%)

Query: 45  IFVAIVGNKE---DGHLFIPQAIAQ----GAEAIVVSSAYSLQDFSATIRS-----NTPI 92
           +F+A  G++    D       A+      GAE  V   A  + D  A + +     + P 
Sbjct: 33  LFLA-AGHRVTGSDSRD--SDAVQALRELGAEIHVGHDAAHVGDADALVVTGALWQDNPE 89

Query: 93  LVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            V+   R           A  + G   + ++AV G  GK++    +      +G     +
Sbjct: 90  YVLAKERGLPILHRSQALAWLISG---QRLVAVAGAHGKTTSTGMIVTALLEAGRDPSFV 146

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                            G   + V  +        L        
Sbjct: 147 NGGVIGGIGVSSAP-------------------GSEELFVVEADESDGSFLLYDTA--VA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D++ + +A+ +A +R            +I +DD  ++ V  R      RV
Sbjct: 186 LITNVDADHLDHYGSHEAFDDAFVRFASA---ASELVVISSDDPGARRVTARIEG---RV 239

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G                    T++ +G        +PG     NA  A  + + +G+
Sbjct: 240 VTFGEDPAADIRITDIVTDGPVAFTLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGLGV 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIV 386
           D    +  L        RFE      RG  +Y DYAH    +   L+  RT+   GRII 
Sbjct: 300 DPDDAIAGLAGFSGTSRRFEL-HAEVRGVSVYDDYAHHPTEVRAALEAARTVVGEGRIIA 358

Query: 387 VFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFI 440
           V       R Q       ++  +LAD  IV D     EDP       + +E         
Sbjct: 359 VHQPHLYSRTQMMAGDFARVYEELADHTIVLDVFGAREDPIPGVTGALVSERFADASHVD 418

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
              +  +A   A E+    D +V    G     I+
Sbjct: 419 YLPDWQQAADRAAEIARDGDFIVTLSCGD-VYRII 452


>gi|312140141|ref|YP_004007477.1| UDP-N-acetylmuramate-l-alanine ligase murc [Rhodococcus equi 103S]
 gi|325676978|ref|ZP_08156650.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
 gi|311889480|emb|CBH48797.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Rhodococcus equi 103S]
 gi|325552278|gb|EGD21968.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
          Length = 498

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 94/452 (20%), Positives = 148/452 (32%), Gaps = 67/452 (14%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH     A+     G  A+V + A   +D    + +     P+++        ++ AS +
Sbjct: 60  GHD--ASALDLLPGGPTAVVTTHAAIPKDNPELVEAAARGIPVIL------RPAVLASLM 111

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPI 168
            G      L V+GT GK+S  S +    Q  G    F +G     +     +        
Sbjct: 112 QGH---RTLLVSGTHGKTSTTSMLVVALQHCGFDPSFAVGGELNEAGTNAHHGTG----- 163

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                        V     + S   L Q+            TN+  DH+D+  T  AY  
Sbjct: 164 ------------DVFVAEADESDGSLLQY-----DPDVVIVTNVEADHLDFFGTSDAYVQ 206

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVGYQGKFIHL------ 279
                F   +      +   DD  S  + +R   A     RV+  G              
Sbjct: 207 V-FDDFVARIAPGGLLVACLDDPGSAALARRTIEAGRDDVRVVGYGTADGVAAAGPVPVG 265

Query: 280 -----KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                 +        Q+  + E         +PG+    NAL A       G     +LE
Sbjct: 266 VELVSWEARDTGGVAQIRFAGEDAARTLRLGVPGKHMALNALAALLAGRGAGASIDELLE 325

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFG 389
            L     V  RF+F G   RG R++ DYAH    +  +L     +       GR++VVF 
Sbjct: 326 GLAGFGGVHRRFQFTG-RERGVRVFDDYAHHPTEVRAVLGAASDLVDDDRQPGRVVVVFQ 384

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIE-KGNRI 446
                           ALDLAD  +V D     E+  P    A +   +   +  + +R 
Sbjct: 385 PHLYSRTVTFAQEFGEALDLADEVVVLDVYGAREEPLPGVSGALVAQSVTKPVHYQPDRS 444

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHET---VHIV 475
           +  R    +    DV++  G G  T     I+
Sbjct: 445 QVPRQVASLAEPGDVVITMGAGDVTMLGGQIL 476


>gi|86282551|gb|ABC91614.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CFN
           42]
          Length = 452

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 140/416 (33%), Gaps = 47/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 48  AEVVVVSTAIRKSNPELIAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 100

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 101 TTTSLVATLLEAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 148

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 149 ---------GTFLKLPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 198

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ R  +   ++++ G      +  K V     +    + +  +        
Sbjct: 199 LDHPEVQSLVGRIEDR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQRTEL 256

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG   + NA  A  +   +GI S  + + L     V  RF   G    G +I+
Sbjct: 257 KGLVMPMPGRHNISNATAAIAVANRLGISSEDIAKGLASFGGVKRRFTLTG-EWNGVQIF 315

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +LK  R    GRII V                    + AD  ++    
Sbjct: 316 DDYGHHPVEIKAVLKAAREACKGRIIAVHQPHRYTRLASLFEEFAACFNDADSILLAPVY 375

Query: 420 PRSEDPEK------IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
              ED  +      + + I  G        +  E +     E+    D +V+ G G
Sbjct: 376 AAGEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPEMVAEVAKPGDFVVLLGAG 431


>gi|193213696|ref|YP_001999649.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobaculum parvum NCIB
           8327]
 gi|229486480|sp|B3QLW3|MURC_CHLP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|193087173|gb|ACF12449.1| UDP-N-acetylmuramate/alanine ligase [Chlorobaculum parvum NCIB
           8327]
          Length = 471

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 145/415 (34%), Gaps = 49/415 (11%)

Query: 70  AIVVSSAYSLQ---DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V SSA   +   +  A  +   P++  D   + L        G      + V+GT GK
Sbjct: 68  VVVYSSAVRPESNVEIQAAEKQGIPVIKRD---EMLGELMRYKVG------ICVSGTHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + +  +   SG S     PT  I   +   +             S +  +G  H+ 
Sbjct: 119 TTTTAMIATMLLESGQS-----PTVMIGGVSDYLKG------------STVVGEG-RHMV 160

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EA     D+  L  +        +L  +H+D + T     ++    F   +P     I 
Sbjct: 161 IEADE--YDRAFLK-LTPTIAVVNSLESEHMDTYGTMDNLRDS-FAAFANKVPFYGRVIC 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFD-FLF 304
             D    + ++ R +    R  + G +    +    + A       T+   G+ +     
Sbjct: 217 CVDWPEIRSLISRLNR---RYTTFGIEEPADVMASDLEACEGGSVFTVEAFGESYPGVRL 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NAL A  + + IG+    ++  L     +  RF+       G  +  DYAH
Sbjct: 274 GVPGRHNVLNALAAFSVGLEIGLPPEKIIAGLGAYTGMRRRFQMKFKGGNGLLVVDDYAH 333

Query: 365 TSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP--- 420
             + ++  +K  R       IV VF         +  +    AL  AD   V    P   
Sbjct: 334 HPSEVKATVKAARHGWKEHRIVAVFQPHLYSRTSEFAVEFGWALSRADAIYVAGIYPSRE 393

Query: 421 RSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           R+ED   +  E++       G      + +  + + +  +      +++  G G 
Sbjct: 394 RTEDFPGVTGELVAEAARKAGAKEVTFEPDSEQLLDSLRQEAGPDTLILFMGAGD 448


>gi|189029215|sp|A5CD22|MURC_ORITB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 490

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/427 (15%), Positives = 146/427 (34%), Gaps = 58/427 (13%)

Query: 66  QGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V+SSA  ++  ++ A I +  PI+   +  + L+           +  +A++G+
Sbjct: 71  NGAGIVVISSAIKHNNPEYQAAILAKIPII---SRAEMLAELMR------SKVAIAISGS 121

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I +  GL        + I+    +NR T          ++       T
Sbjct: 122 HGKTTTTALIACIFEACGLH------PTVITGGIMNNRATNAYLGDGDYFIAEADESDAT 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +                I       TN+  +H+D+++      +A  R F   LP +  
Sbjct: 176 FIK---------------IPATIAVITNIDVEHLDFYKNFDNLISA-FRKFIINLPYDGF 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-- 301
           A+   DD   + ++ +  +       +  +   I    +   +      + ++  +F   
Sbjct: 220 AVACIDDITVQNLIAKITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNE 279

Query: 302 -----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P  G+  + N+L A  + + + +D  ++ +  +    +  RF  +G      
Sbjct: 280 VIITQVTLPALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNFKGIARRFTKIG-EYNNI 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            +  DYAH    +   +   R I     GR+I VF         +            D  
Sbjct: 339 TVIDDYAHHPAEIIATIDTARCIADKQQGRVIAVFQPHRYSRLKQLFSEFTHCFQRVDQL 398

Query: 414 IVTDDNPRSEDPEKIRAEI--IHGIPGFIEKG---------NRIEAIRTAIEMLNKQDVL 462
            ++      E      + I  ++ I  +             +  + I      +   D++
Sbjct: 399 YISQIYDAGEQETYNLSHISLVNAIKSYYHSVYVMPINNLDDLPQIIYR---QVKPCDII 455

Query: 463 VVAGKGH 469
           ++ G G 
Sbjct: 456 LLMGAGD 462


>gi|148284352|ref|YP_001248442.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Boryong]
 gi|146739791|emb|CAM79666.1| UDP-N-acetylmuramate--alanine ligase [Orientia tsutsugamushi str.
           Boryong]
          Length = 502

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/427 (15%), Positives = 146/427 (34%), Gaps = 58/427 (13%)

Query: 66  QGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V+SSA  ++  ++ A I +  PI+   +  + L+           +  +A++G+
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAILAKIPII---SRAEMLAELMR------SKVAIAISGS 133

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I +  GL        + I+    +NR T          ++       T
Sbjct: 134 HGKTTTTALIACIFEACGLH------PTVITGGIMNNRATNAYLGDGDYFIAEADESDAT 187

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +                I       TN+  +H+D+++      +A  R F   LP +  
Sbjct: 188 FIK---------------IPATIAVITNIDVEHLDFYKNFDNLISA-FRKFIINLPYDGF 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-- 301
           A+   DD   + ++ +  +       +  +   I    +   +      + ++  +F   
Sbjct: 232 AVACIDDITVQNLIAKITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNE 291

Query: 302 -----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P  G+  + N+L A  + + + +D  ++ +  +    +  RF  +G      
Sbjct: 292 VIITQVTLPALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNFKGIARRFTKIG-EYNNI 350

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            +  DYAH    +   +   R I     GR+I VF         +            D  
Sbjct: 351 TVIDDYAHHPAEIIATIDTARCIADKQQGRVIAVFQPHRYSRLKQLFSEFTHCFQRVDQL 410

Query: 414 IVTDDNPRSEDPEKIRAEI--IHGIPGFIEKG---------NRIEAIRTAIEMLNKQDVL 462
            ++      E      + I  ++ I  +             +  + I      +   D++
Sbjct: 411 YISQIYDAGEQETYNLSHISLVNAIKSYYHSVYVMPINNLDDLPQIIYR---QVKPCDII 467

Query: 463 VVAGKGH 469
           ++ G G 
Sbjct: 468 LLMGAGD 474


>gi|196230906|ref|ZP_03129767.1| UDP-N-acetylmuramate/alanine ligase [Chthoniobacter flavus
           Ellin428]
 gi|196225247|gb|EDY19756.1| UDP-N-acetylmuramate/alanine ligase [Chthoniobacter flavus
           Ellin428]
          Length = 766

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 143/431 (33%), Gaps = 53/431 (12%)

Query: 61  PQAIAQG-AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
             A   G A+ I+ SSA      ++   IR+   ++   +    +          + +  
Sbjct: 67  QDAANIGDADLIIFSSAIRPGNPEYDEAIRTKRNMVRRADALAAI---------LNCKKG 117

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK++ +S    + +  GL           S +         +         YL
Sbjct: 118 IVVCGMHGKTTTSSMAAHVLKVGGLHP---------SHYVGAEIPILGTNALWDPTGEYL 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G       A  H                  N+  +H+DY+    A      +L  + 
Sbjct: 169 VAEGDESDGTLAFYH-----------PEHAIVLNIEEEHLDYYADLAAIEVVFNQLLSQ- 216

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                  I  ADDA +  +      A    +S G     F     V     +    +   
Sbjct: 217 --TRGKVIFSADDANATRICSTHPGA----ISYGESHTAFYRFDDVHTKDFQSHFRVLRG 270

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+        +PG   V N++ A  L   +G+  A + E LE       RFE    + R 
Sbjct: 271 GEPLGAITLNVPGRHNVSNSVGAIALATELGVPFAKIAEALESFRGARRRFEIKYRSDR- 329

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DY H  + ++  L   +     R++ +F         K       A   AD+A++
Sbjct: 330 YMVVDDYGHHPSEVKATLATAKNTGRKRVLCMFQPHRYSRTLKLKAEFGRAFHHADVAVI 389

Query: 416 TDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGK 467
            D  P SE P      + I  E++  G      + +R + I   I       DV++  G 
Sbjct: 390 ADVYPASELPIDGVSGQTIVDEMLREGHEAASFQPDRKK-IALEIGRALEPGDVVISLGA 448

Query: 468 G--HETVHIVT 476
           G  HE   I+ 
Sbjct: 449 GNIHEAGSILA 459


>gi|108804334|ref|YP_644271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765577|gb|ABG04459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 454

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 146/439 (33%), Gaps = 44/439 (10%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR ++ G +F A+ G + DG  F P            + A       A      P LVV
Sbjct: 32  DSRAVRGGELFFALRG-RLDGADFAPD-----------ARARGAVAAVADRPLEVPTLVV 79

Query: 96  DNTRKFLSLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           ++  + L   A   L  +    ++ +TGT GK++    +  I + +G        T+T  
Sbjct: 80  EDPLRALQELARWSLRREASATVVGITGTVGKTTTKDALATILRSAGRKI-----TATQG 134

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           +                  L+      V  + + A+  G         +   G  T +  
Sbjct: 135 NLN-------NEIGLPLTVLNAAPDTEVMVLEMGATHPGDIAFLCGIARPHVGVLTAISP 187

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+D   + Q     K  L    LP++   +         E       A  R ++ G +G
Sbjct: 188 VHLDSFGSLQKLAETKGEL-ARSLPEDGAFVSPVGVP---EAAVGGGRAFGRHITFGDEG 243

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
             +    V       + T+   G+      P+ G   V   L A G  +A+G+       
Sbjct: 244 ASLWASGVEETEEGLRFTVHAFGESAAVRAPVHGTHLVRPLLAATGGALALGVALEECAR 303

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK--NIRTITSGRIIV-----V 387
            L +L     R + +            Y  +  ++  +L+    +  +SGR +V     +
Sbjct: 304 GLSRLRRTGLRGDLLRLRDDILLYDDSYNASPAAMAAVLRYGARQASSSGRRLVAVLGGM 363

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           F  G    +  R      A    D+ +        E+     AE   G    +   +  E
Sbjct: 364 FELGPGAREYHREAGRLAAEVGVDLLVC-----VGEEAGW-YAEAFDG--EKVLYRDAGE 415

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A R    +L   D ++V G
Sbjct: 416 AARELPHLLRPGDYVLVKG 434


>gi|46199022|ref|YP_004689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
 gi|46196646|gb|AAS81062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
          Length = 438

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 136/435 (31%), Gaps = 56/435 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            + ++   S     G +F A+ G    G  FIP+A+A+GA  ++   A            
Sbjct: 36  PVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARGASLVLADQAGPAT-------- 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               L V++  + L      L    P  +LAV G+SGK++    + Q             
Sbjct: 88  ----LEVEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKEALAQGLGLPAPPGNLNT 143

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +  F   +  +  +          +   GV      A    L        K     
Sbjct: 144 APPLVRFFWHLDPQSPGA----------VVELGVDRQGEMAELFALA-------KPHLAV 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T LG +H++   T +     +  L                    ++           +L
Sbjct: 187 LTALGEEHLEAFGTLEKAVQEEAHLLRAPTA-----------LVGEQAAPLVLGLREDLL 235

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G+       + +     + +              P PG    Y AL A      +G+ 
Sbjct: 236 VYGFAEGTFRGRDLELGLRESRFRY----GGLHVRVPYPGLGPAYGALAALAAAEVLGLS 291

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVV 387
              V E L +L + PGR E   T   GG ++V+ A+ +N L +           GR   V
Sbjct: 292 LEEVAERLSRLTLPPGRME---TREVGGVVFVNDAYNANPLSVKAGLRWLAAQPGRKWAV 348

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            G   +  +    +  ++A + A + +    +P    P         G        +  E
Sbjct: 349 LGEMRELGRESLRLHLEVAEEAARLGL----SPLYLGPHARHQAAFSGEA----VESLEE 400

Query: 448 AIRTAIEMLNKQDVL 462
           A+      +   D++
Sbjct: 401 ALAWLKARVAPGDLV 415


>gi|324998160|ref|ZP_08119272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Pseudonocardia sp.
           P1]
          Length = 352

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 96/327 (29%), Gaps = 38/327 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +I     E+            +      +  V  DSR    G +F+A+ G + DGH F  
Sbjct: 42  MIEMTLAEVAAVTGGTLHGVSDEQAAVPVTAVEFDSRKAGPGALFLALPGERADGHDFAA 101

Query: 62  QAIAQGAEAIVVSSAYSLQ---DFSATIRSNTPIL--VVDN-----TRKFLSLFASRLYG 111
            A+ +GA  ++              A +R     L  V  +         L   A  + G
Sbjct: 102 GAVTRGATGVLAGRPVDAPAVVAPPAEVRDAHTYLGSVDPDGHGAAVLAALGRLARHVLG 161

Query: 112 KHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
             P   ++ VTG++GK+S    +  +    G +                           
Sbjct: 162 ALPGLAVVGVTGSAGKTSTKDLLAAVLAPQGRTVA-------------PPESFNNELGTP 208

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             AL   ++     +   A   G             G   N+G  H+    ++     AK
Sbjct: 209 WTALRADAATRHLVLEFSARGAGHIAALCAVAPPRIGVVLNVGSAHLGEFGSRAGIAAAK 268

Query: 231 MRLFEELLPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVC 283
             L E L P +        A++ ADD     V+        RV++ G      +  +   
Sbjct: 269 GELVEALPPGDLPGGRGGVAVLNADDEL---VLAMRSRTPARVVTFGRSACADVRAEDET 325

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +    +            L G  
Sbjct: 326 LDAGRPSFRLVTPAGSAPVSLRLVGAH 352


>gi|167766034|ref|ZP_02438087.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
 gi|167712114|gb|EDS22693.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
          Length = 463

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 143/416 (34%), Gaps = 51/416 (12%)

Query: 71  IVVSSAYSL---QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +V ++A +    +++   IR N P+       K  +L    ++    +N +AV+GT GK+
Sbjct: 75  VVYTAAINFDTNEEYKEAIRRNIPV------MKRATLLGQMMHNY--QNAIAVSGTHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   +G +   I     + +   + R+      ++ +A  Y +S        
Sbjct: 127 TTTSMLSYIL-LAGNTDPTISVGGILDAINGNIRVGHSET-FVTEACEYTNSFLEFF--- 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH+D+ +      ++  R F   LP     II 
Sbjct: 182 ----------------PKISIILNIEEDHMDFFKDLDDIRHS-FREFAHKLPDYGYLIIN 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQ-QVTISVEGKDFD-FL 303
            +      ++           + G +        K +              +G+  D   
Sbjct: 225 GEIENIDYIVDGLKAEYA---TFGLENDSYDYCAKNIGYDAFGHAHFDYYYKGEFIDHIQ 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  V NAL A      IGID   + + L        RFE  GT      +  DYA
Sbjct: 282 LNVNGEHNVKNALAAIAAAKRIGIDVDTMKKGLLGFTGAKRRFELKGT-CNDFTVVDDYA 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +   L++ +      +  VF                 AL L D  IVTD     E
Sbjct: 341 HHPTEIRATLESAKNYPHNELWCVFQPHTYSRTIAFLDDFAKALSLCDHVIVTDIYAARE 400

Query: 424 DPEKIR--AEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               I    +I+  +        +I++ + IE  +  ++   K D+L+  G G+  
Sbjct: 401 KDTGIVSSKDIVDRMADYDVDVHYIKEFDDIE--KFILKNCKKNDLLITMGAGNVD 454


>gi|188582368|ref|YP_001925813.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium populi
           BJ001]
 gi|229620045|sp|B1ZGP5|MURC_METPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|179345866|gb|ACB81278.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium populi
           BJ001]
          Length = 468

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 144/428 (33%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + +   A  +VVS+A    +          + VV        L   +       
Sbjct: 58  GHR--AENVEN-AALVVVSTAIRRDNPELIEARERRLPVVRRAEMLAELMRFKSC----- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +   +G     +     I+++  + R+     + +    S
Sbjct: 110 --VAVAGTHGKTTTTSLVATLLD-AGNLDPTVINGGIINAYGTNARMGAGDWMVVEADES 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  +H+D+  +  A  +A  R F 
Sbjct: 167 D--------------------GTFLKLPADVAIVTNIDPEHLDHFGSFDAIKDA-FRRFI 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + +P    A++  D    ++++    +   R+++ G      + L  +     + +  + 
Sbjct: 206 DNIPFYGFAVMCIDHPIVQDLVGHIEDR--RIITYGENPQADVRLIDIDLKGGQSRFRVM 263

Query: 295 VEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +         D + P+PG     NA  A  +   +G+    + + L     V  RF 
Sbjct: 264 IRDRRPGFRLEMQDLVLPMPGRHNALNATAALAVAHELGVSEDAIRKALAGFGGVKRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G    G  I+ DY H    +  +L+  R+ T G++I V                    
Sbjct: 324 RTGEW-NGAAIFDDYGHHPVEIAAVLRAARSSTDGKVIAVVQPHRYTRLQSLFEDFCTCF 382

Query: 408 DLADIAIVTDDNPRSEDP-EKI-RAEIIHGIPGFIEKG----NRIEAIRTAIE-MLNKQD 460
           + AD  IV       E P E I R  +I G+     +      R E +   +       D
Sbjct: 383 NDADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRDAVALERPEDLARLVSGRAEPND 442

Query: 461 VLVVAGKG 468
            +V  G G
Sbjct: 443 YVVCLGAG 450


>gi|302868924|ref|YP_003837561.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora aurantiaca ATCC
           27029]
 gi|302571783|gb|ADL47985.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora aurantiaca ATCC
           27029]
          Length = 493

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 90/413 (21%), Positives = 146/413 (35%), Gaps = 45/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V SSA               + V+  +       A+ + G+     +AV GT GK
Sbjct: 76  GVDTVVYSSAIPQDHLEMVEARRRGLRVLHRSEA----LAAAMTGR---RTVAVAGTHGK 128

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           +S  S V  + Q++G     +  G  S + S A                          H
Sbjct: 129 TSTTSMVTMVLQQAGTDPSFVIGGEISEVGSGAHHGTG--------------------EH 168

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             VEA        R   I +      TN+  DH++ +        A    F  L      
Sbjct: 169 FVVEADES----DRSFLIYRPFVSIVTNIEADHLNTYGDLATLEAAFAE-FARLTDPAGF 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-D 301
            I  ADDA  + + +     G RV + G      + + +V +  +  +    VEG+   +
Sbjct: 224 VITCADDAGGRRLAETLRAEGRRVWTYGESADADLRMSEVVSSAHGVRFQAEVEGRPLGE 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG     N+  A      + +  A     L     V  RFE  G  + G  +Y +
Sbjct: 284 IRLPVPGRHMALNSAAAVLAAYLLDLPVAAAEAALGTFPGVRRRFERKGA-ADGVLVYDE 342

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YA+   S+ + L+ +R +   GR+IVVF                 AL +AD  ++ +   
Sbjct: 343 YAYHPTSMTLALQTLREVAGDGRLIVVFQPYRLYRTRDNQAEIAAALGIADEVVLLEVFG 402

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNRIEA----IRTAIEMLNKQDVLVVAGK 467
             E   P +  A +I  +P   E+   +EA               DV+V  G 
Sbjct: 403 PGETRRPGEGSAALIQEVPLPAERKVFVEAWDDVPGEVARRARTGDVVVTMGA 455


>gi|225552447|ref|ZP_03773387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
 gi|225371445|gb|EEH00875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
          Length = 463

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 138/400 (34%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +  V S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEELVFLLTSNVIKLLQTLASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  Q     K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQTIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLEGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFMALKNMILDLN 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
              +  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQNKKFIVLGSFKELGELAYKTHKDLIQEAVSMNFDKIFL 404


>gi|291559992|emb|CBL38792.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SSC/2]
          Length = 461

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 143/416 (34%), Gaps = 51/416 (12%)

Query: 71  IVVSSAYSL---QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +V ++A +    +++   IR N P+       K  +L    ++    +N +AV+GT GK+
Sbjct: 73  VVYTAAINFDTNEEYKEAIRRNIPV------MKRATLLGQMMHNY--QNAIAVSGTHGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   +G +   I     + +   + R+      ++ +A  Y +S        
Sbjct: 125 TTTSMLSYIL-LAGNTDPTISVGGILDAINGNIRVGHSET-FVTEACEYTNSFLEFF--- 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH+D+ +      ++  R F   LP     II 
Sbjct: 180 ----------------PKISIILNIEEDHMDFFKDLDDIRHS-FREFAHKLPDYGYLIIN 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQ-QVTISVEGKDFD-FL 303
            +      ++           + G +        K +              +G+  D   
Sbjct: 223 GEIENIDYIVDGLKAEYA---TFGLENDSYDYCAKNIGYDAFGHAHFDYYYKGEFIDHIQ 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  V NAL A      IGID   + + L        RFE  GT      +  DYA
Sbjct: 280 LNVNGEHNVKNALAAIAAAKRIGIDVDTMKKGLLGFTGAKRRFELKGT-CNDFTVVDDYA 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +   L++ +      +  VF                 AL L D  IVTD     E
Sbjct: 339 HHPTEIRATLESAKNYPHNELWCVFQPHTYSRTIAFLDDFAKALSLCDHVIVTDIYAARE 398

Query: 424 DPEKIR--AEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               I    +I+  +        +I++ + IE  +  ++   K D+L+  G G+  
Sbjct: 399 KDTGIVSSKDIVDRMADYDVDVHYIKEFDDIE--KFILKNCKKNDLLITMGAGNVD 452


>gi|188590785|ref|YP_001919870.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|188501066|gb|ACD54202.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 872

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 130/354 (36%), Gaps = 25/354 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +  + G   + +G TST   +  +  +          A + L ++ V    +E + 
Sbjct: 495 LINHVLSKMG---YSVGMTSTEGIYVNNKCIHKGDDSGFNSAKTILLNRDVDIAVLETAR 551

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L          TN+  DH  +D   + +     K  L  E + +    ++ AD
Sbjct: 552 GGLIRKGLAYDIADISVITNITNDHLGLDGINSMEQLSFVKA-LVGEAVKENGFTVLNAD 610

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304
           D +SK ++ R                  K I    +        + +    K +      
Sbjct: 611 DKWSKTIINRIKANKIFFSKYENNELIEKNISDGGIAVFIENDYIVVVNNHKKYSICSIN 670

Query: 305 ------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                     ++ + N + A G  + + ID  ++ + +   ++      F      G +I
Sbjct: 671 DVPLSYNGLLKYNLENIMAACGALVGMNIDYCMISKGIMDFNLDNNNGRFNIYEVDGRKI 730

Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +DY H     + +L ++  I     +I V G  GDR       +GKI  ++ D  I+ +
Sbjct: 731 ILDYGHNIEGYKAVLSSLNKIKKDKDLIGVIGIPGDRCDDIAIEIGKICSEMLDKIIIKE 790

Query: 418 D-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D + R  +  +I + + +G+             + I+A+  A+ +  K D +VV
Sbjct: 791 DKDRRGREQGEIASLLKNGVLRENKNSKIHVCLDEIKALEKALMISKKGDTIVV 844


>gi|162329635|ref|YP_470341.2| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli CFN 42]
 gi|109892728|sp|Q2K6C2|MURC_RHIEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 471

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 140/416 (33%), Gaps = 47/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIRKSNPELIAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLEAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ R  +   ++++ G      +  K V     +    + +  +        
Sbjct: 218 LDHPEVQSLVGRIEDR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQRTEL 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG   + NA  A  +   +GI S  + + L     V  RF   G    G +I+
Sbjct: 276 KGLVMPMPGRHNISNATAAIAVANRLGISSEDIAKGLASFGGVKRRFTLTG-EWNGVQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +LK  R    GRII V                    + AD  ++    
Sbjct: 335 DDYGHHPVEIKAVLKAAREACKGRIIAVHQPHRYTRLASLFEEFAACFNDADSILLAPVY 394

Query: 420 PRSEDPEK------IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
              ED  +      + + I  G        +  E +     E+    D +V+ G G
Sbjct: 395 AAGEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPEMVAEVAKPGDFVVLLGAG 450


>gi|317499409|ref|ZP_07957676.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893281|gb|EFV15496.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 463

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 143/416 (34%), Gaps = 51/416 (12%)

Query: 71  IVVSSAYSL---QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +V ++A +    +++   IR N P+       K  +L    ++    +N +AV+GT GK+
Sbjct: 75  VVYTAAINFDTNEEYKEAIRRNIPV------MKRATLLGQMMHNY--QNAIAVSGTHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   +G +   I     + +   + R+      ++ +A  Y +S        
Sbjct: 127 TTTSMLSYIL-LAGNTDPTISVGGILDAINGNIRVGHSET-FVTEACEYTNSFLEFF--- 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH+D+ +      ++  R F   LP     II 
Sbjct: 182 ----------------PKISIILNIEEDHMDFFKDLDDIRHS-FREFAHKLPDYGYLIIN 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQ-QVTISVEGKDFD-FL 303
            +      ++           + G +        K +              +G+  D   
Sbjct: 225 GEIENIDYIVDGLKAEYA---TFGLENDSYDYCAKNIGYDAFGHAHFDYYYKGEFIDHIQ 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  V NAL A      IGID   + + L        RFE  GT      +  DYA
Sbjct: 282 LNVNGEHNVKNALAAIAAAKRIGIDVDTMKKGLLGFTGAKRRFELKGT-CNDFTVVDDYA 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +   L++ +      +  VF                 AL L D  IVTD     E
Sbjct: 341 HHPTEIRATLESAKNYPHNELWCVFQPHTYSRTIAFLDDFAKALSLCDHVIVTDIYAARE 400

Query: 424 DPEKIR--AEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               I    +I+  +        +I++ + IE  +  ++   K D+L+  G G+  
Sbjct: 401 KDTGIVSSKDIVDRMADYDVDVHYIKEFDDIE--KFILKNCKKNDLLITMGAGNVD 454


>gi|251778502|ref|ZP_04821422.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082817|gb|EES48707.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 872

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 130/354 (36%), Gaps = 25/354 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +  + G   + +G TST   +  +  +          A + L ++ V    +E + 
Sbjct: 495 LINHVLSKMG---YSVGMTSTEGIYVNNKCIHKGDDSGFNSAKTILLNRDVDIAVLETAR 551

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L          TN+  DH  +D   + +     K  L  E + +    ++ AD
Sbjct: 552 GGLIRKGLAYDIADVSVITNITNDHLGLDGINSMEQLSFVKA-LVGEAVKENGFTVLNAD 610

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304
           D +SK ++ R                  K I    +        + +    K +      
Sbjct: 611 DKWSKTIINRIKANKIFFSKYENNELIQKNISDGGIAIFIENDYIVVVNNHKKYSICSIN 670

Query: 305 ------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                     ++ + N + A G  + + ID  ++ + +   ++      F      G +I
Sbjct: 671 DVPLSYNGLLKYNLENIMAACGALVGMNIDYCMISKGIMDFNLNNNNGRFNIYEVDGRKI 730

Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +DY H     + +L ++  I     +I V G  GDR       +GKI  ++ D  I+ +
Sbjct: 731 ILDYGHNIEGYKAVLSSLNKIKKDKDLIGVIGIPGDRCDDIAIEIGKICSEMLDKIIIKE 790

Query: 418 D-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D + R  +  +I + + +G+             + I+A+  A+ +  K D +VV
Sbjct: 791 DRDRRGREQGEIASLLKNGVLRENKNSKIHVCLDEIKALEKALMISKKGDTIVV 844


>gi|328472000|gb|EGF42877.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           10329]
          Length = 485

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 156/448 (34%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVMAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK- 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+    
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSDDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  +G+ + D    +PG     NA  A  +     I+   +L+
Sbjct: 260 DVRIENYHQEGQQGKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +   R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                           L+  D+ I+ D     E P  I       +   I    +++ I 
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKVDPIF 437

Query: 451 T-AIEML--------NKQDVLVVAGKGH 469
              IE L           D+++  G G 
Sbjct: 438 VPEIEQLPSVLANVIQDGDLILTQGAGD 465


>gi|291518352|emb|CBK73573.1| UDP-N-acetylmuramate--L-alanine ligase [Butyrivibrio fibrisolvens
           16/4]
          Length = 414

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 135/393 (34%), Gaps = 46/393 (11%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENI 117
           PQA +       ++    L  ++A I  + P L+         L  + L G+   +  N 
Sbjct: 39  PQAASN------ITDDIDLIVYTAAISDDNPELMAAKASGKPMLTRAELLGEIMENYANS 92

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT GK++  S V QI   +            I      N     S I++A+A  Y 
Sbjct: 93  ITVAGTHGKTTTTSMVSQILLETSKEPTI--TVGAILDAIHSNVHVGDSDIFVAEACEYT 150

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S                               N+  DH+D+ +       A  R F E 
Sbjct: 151 NSFHSFF-------------------PKYNIILNVEADHLDFFKNLDNV-RASFRKFAEN 190

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--V 295
              +   II  +      V        C+V++    G    +    + + K   +     
Sbjct: 191 TSDDGALIINNE---IDNVSYFTEGLKCKVITYALHGDADIVPTEISYNEKGFASFVPVY 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+  +     +PG+  + NAL A  LC+ +G+D + +   L K      RFE  G   +
Sbjct: 248 KGQALERITLNVPGDHNISNALSAIVLCLEMGVDYSCIKTGLSKFGGAHRRFELKGI-YK 306

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +  DYAH    +   L         RIIV F                 AL  ADI I
Sbjct: 307 GATVIDDYAHHPTEIRASLAAAANYPHNRIIVCFQSHTYTRTLSLLDDFAEALSAADIVI 366

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           + D     E         I+G+    +  +R+E
Sbjct: 367 LPDIYAAREPD-------IYGVSS-KDIADRLE 391


>gi|111115130|ref|YP_709748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|216263734|ref|ZP_03435728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
 gi|110890404|gb|ABH01572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|215979778|gb|EEC20600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
          Length = 463

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 139/400 (34%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ ++  S DSR I      G ++ A  GNK DG  F+   I  G +  + S  +  +  
Sbjct: 25  EKVVSFYSLDSREINDNNINGSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  +     +A+TG++GK++    +  I  +  
Sbjct: 85  EYLNDNEGLVFLLTSNVIKLLQTLASFLIKRTSFKRIAITGSNGKTTTKEILYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGISYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFRGLQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + +++K       K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDYENLNIKSFSFSEGKFSYDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIREGLIETTFQKGRAEILTKN--GYLILNDSYNGNMGSFMALKNMILDLN 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
              +  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQNKKFIVLGSFKELGEFAYKTHKDLIQEAVSMNFDKIFL 404


>gi|308235553|ref|ZP_07666290.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis ATCC
           14018]
 gi|311114359|ref|YP_003985580.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis ATCC
           14019]
 gi|310945853|gb|ADP38557.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis ATCC
           14019]
          Length = 503

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 132/426 (30%), Gaps = 52/426 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V SSA    +          + +V  +   LSL  S   G      + V G  GK++ +
Sbjct: 84  LVYSSAIKPSNPEIIAAYQNGVKLVHRS-DILSLLLSAKRG------VTVAGAHGKTTTS 136

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I +  G       P+  I    Q          +    +  ++    +  S E  
Sbjct: 137 SLLAHILRVCG-KGDLADPSYAIGGSIQAQDGGEIDGGHAGSGIVMVAEADESDGSFEKY 195

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +                  TN+  DH+D++   Q Y +A     E L       +I ADD
Sbjct: 196 N------------PYIAIVTNVEADHLDHYGNAQNYRSA---FVEHLSHALGHIVICADD 240

Query: 251 AYSKEVMKRAHNAGCR---VLSVGYQG--------------KFIHLKKVCAIHNKQQVTI 293
             ++ V+    +   +   V +                    FI  +        +   I
Sbjct: 241 DGARAVLDALSDDSLKKTIVYTSNKDNVSLLNDRVKSFVKFAFIEHESEKTGSGSESFVI 300

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G   D    +PG     NA  A    + +G+      +          RF+  G   
Sbjct: 301 EFNGDFIDVNLIIPGLHNARNACAAIIAAMLLGMSPKDAADGASSFRGASRRFDIRGC-V 359

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  +  DYAH    ++ +L+  R       I V+F                 AL LAD 
Sbjct: 360 NGVTVVDDYAHHPTEIDALLRAARRRYPNASIRVLFQPHLFSRTRSFAHEFASALSLADD 419

Query: 413 AIVTDDNPRSEDPE---KIRAEIIHGIPGFIEKGNRIEAIR-------TAIEMLNKQDVL 462
            IVT   P  E  E    I A  I  +    +  + IEA+                 DVL
Sbjct: 420 VIVTGIFPAREKQEDFPDIHASTIVDVARKDDITSNIEAVEDMREGALKLASRAKNGDVL 479

Query: 463 VVAGKG 468
              G G
Sbjct: 480 FTVGAG 485


>gi|218249487|ref|YP_002374827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|218164675|gb|ACK74736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
          Length = 463

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 138/400 (34%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +    S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFMALKNMILDLN 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
              +  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQNKKFIVLGAFKELGELAYKTHKDLIQEAISMNFDKIFL 404


>gi|288958924|ref|YP_003449265.1| UDP-N-acetylmuramate--alanine ligase [Azospirillum sp. B510]
 gi|288911232|dbj|BAI72721.1| UDP-N-acetylmuramate--alanine ligase [Azospirillum sp. B510]
          Length = 472

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 146/439 (33%), Gaps = 54/439 (12%)

Query: 44  WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
            +FV        GH    + IA GA  IVVSSA    +          + VV    + L 
Sbjct: 55  SVFV--------GHR--AENIA-GAAVIVVSSAVKRDNPEVVAARAALVPVVRRA-EMLG 102

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
                 +       +A+ GT GK++  S V  + + + L    I     I+++  + RL 
Sbjct: 103 ELMRLKWA------IAIGGTHGKTTTTSMVGHMLEHANLDPTVING-GIINAYGSNTRLG 155

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T   + +            T V + A                    TN+  +H+D++ T 
Sbjct: 156 TGDWMVV-----EADESDGTFVKLPAC---------------IAVVTNMDPEHLDFYGTF 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                A    F + +P    A +  D    + ++ R  +          Q     +    
Sbjct: 196 DN-ARAAFDSFVQNIPFYGFAALCIDHPEVQAMIPRVSDRRIVTYGFSPQADIRAVNVEL 254

Query: 284 AIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                +   +  +    +         P+ G   V N+L    +   +G+   ++ + + 
Sbjct: 255 GPDGAKYDVLIYDRHTGESRAIAGVRLPMYGPHNVQNSLACFAVGNEMGLPDVVMRDSMA 314

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           K   V  RF   G  + G  +  DY H    +  +LK  RT  +GR I V          
Sbjct: 315 KFQGVKRRFTKTG-EANGITVIDDYGHHPVEIAAVLKAARTAGTGRTIAVVQPHRYSRLA 373

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAE------IIHGIPGFIEKGNRIEAIR 450
                     + AD  IV D     E P E +  +       +HG    +   N+ E  +
Sbjct: 374 NLFEEFCTCFNDADAVIVADVYAAGEAPIEGVSRDSLVEGLRMHGHRHVVALQNQQELAQ 433

Query: 451 TAIEMLNKQDVLVVAGKGH 469
              EM    D +V  G G+
Sbjct: 434 VVREMARPGDFVVCLGAGN 452


>gi|160932699|ref|ZP_02080088.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
 gi|156867773|gb|EDO61145.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
          Length = 473

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 140/407 (34%), Gaps = 37/407 (9%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVAS 131
                  ++A ++ + P L     +   +L  S + G   +   + +AV+GT GK++  +
Sbjct: 78  KDAEAVVYTAAVKQDNPELAAAREKGIPTLERSVMLGIVCRRYADAVAVSGTHGKTTTTA 137

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + QI  +SG     I        F   N     S I + +A  Y+ +            
Sbjct: 138 MLTQILVQSGKDPTAI--IGGKLPFLGGNSRVGSSEIMVCEACEYVDTF----------- 184

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +        N+  DH+DY +       +    F   L      ++  DDA
Sbjct: 185 --------LQLTPAVSIILNIDADHLDYFKDLNNIIKS-FHQFA--LQTTKRLVVNGDDA 233

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDF-DFLFPLPG 308
            ++   K         ++ G +    +     A      ++ ++   G+   + +  +PG
Sbjct: 234 NTQ---KAIAGVSLPAVTFGMKDTNDYYAGSIAEKKGVCEEFSLMYRGEKLAEIVLSVPG 290

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  +YNAL AA     +G+    + + L     V  RFE +G N  G  +  D+AH    
Sbjct: 291 EHNIYNALAAAAAAHTLGVSPEDIAKSLHAFTGVHRRFEVLG-NPSGIMVADDFAHHPTE 349

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEK 427
           L   L     +    +  VF                 AL + D  ++++  P  E +   
Sbjct: 350 LSATLTAAMKMGFHTVWAVFQPHTYSRTALLLEDFAKALSIPDRVVMSEILPVREVNTYH 409

Query: 428 I-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           I   ++   IPG +      E            D+++  G G+    
Sbjct: 410 IYTKDLADKIPGSVWFDTFEEITDYVTAHAEPGDLILTLGGGN-VYQ 455


>gi|146276739|ref|YP_001166898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554980|gb|ABP69593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 481

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 164/464 (35%), Gaps = 58/464 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR ++ G +FVA+  ++ DGH F+ QA+A GA A +VS           +    
Sbjct: 25  TGVSIDSRTLRPGDLFVALK-DQRDGHAFVAQALANGAAAALVSR------IPDGLTDGA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L+        +    ++ VTG+ GK+S    ++   +  G         
Sbjct: 78  PLLLVPDVLEALAALGRAARARSRARVIGVTGSVGKTSTKEMLRAALRGQG--------- 128

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+ +           P+ LA+  + +       + +  +  G         +      T
Sbjct: 129 -TVHAAEASYNNHWGVPLTLARMPADV---DFAVIEIGMNHPGEIAPLARLARPHLALIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++   +  A    K  + E L P    AI+ AD   +  +  RA   G   ++ 
Sbjct: 185 TVAPAHLEAFDSMTAIAEEKAAILEGLEP-GGLAILPADLEVTPVLAARASALGVPAMTF 243

Query: 271 GYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G  G     L  +           S   + F F    PG     NAL       A+G+D 
Sbjct: 244 GQSGAADWRLSDIQITPEATIARASHADQTFLFKVLTPGRHFAANALAVLAAAEALGLDL 303

Query: 330 ALVLEHL-----EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-- 381
            +    L             R      +  G  +  D +     S+   L+ +  +    
Sbjct: 304 TITACDLGLWSPPAGRGTRERIALDPVDEAGFDLIDDAFNANPASVAASLELLAAMAPTD 363

Query: 382 -------GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEI 432
                  GR I + G   +    +  +   +A     A IA+V    PR           
Sbjct: 364 GVGRISTGRRIAILGDMLELGPTEAALHRAVADHPALAGIALVHCVGPR----------- 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIE-------MLNKQDVLVVAG-KG 468
           +  +   + +  R E + TA E       +++  D+++V G KG
Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|90580229|ref|ZP_01236036.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
 gi|90438531|gb|EAS63715.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
          Length = 487

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 146/420 (34%), Gaps = 50/420 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  +V S+A S ++      +   I VV    + L+      +G      +A+ GT G
Sbjct: 80  QGASVVVASTAISKENPELMAATELRIPVVRRA-EMLAELMRYRHG------IAIAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  +   QI   +GL    +      S+        +         ++       + +
Sbjct: 133 KTTTTALTTQIYSEAGLDPTFVNGGLVKSAGTNARLGCS------RYLIAEADESDASFL 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +             F   LP    A+
Sbjct: 187 ---------------HLQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDF 302
           +  DD   +E++ R        L+ G+  +   ++        QQ   +V  KD    + 
Sbjct: 232 MCIDDPVVRELLPRVGRPM---LTYGF-AEDADVRITNYTQMGQQGHFTVLRKDKPALNI 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIY 359
              +PG+    NA  A  +    G+D   ++  L +      RF+ +G   T +    + 
Sbjct: 288 TLNIPGKHNALNATAAIAVATEEGVDDDAIMRALIEFEGTGRRFDHLGEFETGNGNVMLV 347

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H  + +++ ++  R      R++++F                  LD  D+ ++ D 
Sbjct: 348 DDYGHHPSEVDVTIQAARAGWADKRLVMIFQPHRYSRTRDLYDDFANVLDQVDVLVMLDV 407

Query: 419 NPRSEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               E P        +   I       P F+ +   + AI     ++   D+++  G G 
Sbjct: 408 YSAGEAPIAGADGRALCRTIRSRGKIDPIFVPEAEELPAILA--NIIQNDDLVLTQGAGD 465


>gi|295695684|ref|YP_003588922.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
 gi|295411286|gb|ADG05778.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
          Length = 529

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 130/373 (34%), Gaps = 29/373 (7%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +FL     +L  +    I+ +TG+ GK+S    +  +  +      +     T  S+   
Sbjct: 166 RFLRAAREKLAQRPDLIIVGITGSYGKTSTKFILGTLLTQ------KFNVLVTPDSYNTP 219

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             +       L           V  V + A   G  +   D +    G  T +G  H++ 
Sbjct: 220 MGVCRVVNERLK------PEHEVFVVEMGARQPGDIRELADLVHPKIGVLTAVGPVHLET 273

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             + +A    K  L + L P +  A++  D+ Y +E+ K   +       +   G  + +
Sbjct: 274 FGSVEAVARTKYELIKSL-PPDGLAVMNYDNPYCRELAKETRHVQVEGYGLESPGARLVV 332

Query: 280 KKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             V          ++    G+       L G  QV N L A  +   +G+    +   + 
Sbjct: 333 SDVHVSEKGTTFVLADRETGESASCRTDLLGRHQVLNILGAVTVARHLGLSLRQIAAGIG 392

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--- 393
           +L  VP R + +   S G  +  D +       E+ L+ +    SGR +VV     +   
Sbjct: 393 QLQPVPHRLQLI--RSGGVYVIDDAFNSNPTGTEVALEVLSGF-SGRKVVVTPGMVELGG 449

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIR 450
            ++      G+    + D  I+       E  + I A ++ G           +  EA  
Sbjct: 450 EEERYNREFGQRMAQVCDHVILVGP----ERTKPIAAGLLDGGLPRDRVSVVTSLEEATA 505

Query: 451 TAIEMLNKQDVLV 463
              ++L   D ++
Sbjct: 506 VLQQLLRPGDAVL 518


>gi|209519096|ref|ZP_03267902.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
 gi|209500468|gb|EEA00518.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
          Length = 467

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 140/434 (32%), Gaps = 61/434 (14%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A     GA+A+VVS+A    +       +  I +V      L+       G      
Sbjct: 55  IGHAAENIEGADAVVVSTAVRSDNPEVLAARHRRIPIVPRAVM-LAELMRLKQG------ 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  +    GL      PT  I                  + +S  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLISAG 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++  +       +           +  +    TN+  DH+D +    A        F   
Sbjct: 147 ANARLGTGDFIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISV 295
           LP    A++  DD   KE++         ++  G+  +       V A   +   T +  
Sbjct: 207 LPFYGIAVLCVDDPNVKEILPFVSKP---IIRYGFAAEAQVRAVNVEAREGRMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTN 352
           +    D    LPGE  V NAL A  +   + +  A +   L   + V  RF+    V   
Sbjct: 264 DAPSLDITLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVT 323

Query: 353 SRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
           S G       +  DY H    +   +   R    GR +V+ F                  
Sbjct: 324 SDGQVAGSYTLVDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKV 383

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE------------AIRTAIE 454
           L   D  ++T+     E P  I A     +   +    ++E            A+ T + 
Sbjct: 384 LSTVDALVLTEVYAAGEAP--IVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVV- 440

Query: 455 MLNKQDVLVVAGKG 468
                DV++  G G
Sbjct: 441 --RDGDVVITMGAG 452


>gi|239832308|ref|ZP_04680637.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
 gi|239824575|gb|EEQ96143.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
          Length = 468

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 139/416 (33%), Gaps = 46/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + +V    +   + A  +  +H    +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKNNPELIAAREKLLPIV----RRAEMLAELMRFRH---AVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVAALLD-AGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  +   R+++ G   +                  + +  +        
Sbjct: 218 LDHPEVQALVSRIEDR--RIITYGQNPQAEVRFVNHRMDGAASLFDVVIRSRKGEATEIK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG+  V NA  A  +   +GI +  +   L     V  RF   GT   G  I+ 
Sbjct: 276 DLRLPMPGQHNVSNATAAIAVAHELGISADDIRRGLGSFGGVKRRFTHTGTW-NGVEIFD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +  +LK  R    GR+I +                    + AD  IV     
Sbjct: 335 DYGHHPVEIRAVLKAAREAAKGRVIAIVQPHRFTRLASLFDEFAACFNDADTVIVAPVYT 394

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
             EDP      E + + I           N  EA+   +  +    D +V  G G+
Sbjct: 395 AGEDPIEGVNSETLVSRIKTAGHRDARYANGPEALAPLVASIAEPGDFVVCLGAGN 450


>gi|221202515|ref|ZP_03575545.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
 gi|221208163|ref|ZP_03581168.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221172066|gb|EEE04508.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221177610|gb|EEE10027.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
          Length = 465

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 142/430 (33%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARAQRVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
            EG+     +  LPG   V NAL A  +   +G+    + + L + + V  RF+    V 
Sbjct: 262 REGRTPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVP 321

Query: 351 TNSRG-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           T   G   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 TADGGRYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDN---------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNK 458
             D  ++T+              +   +         P F+E  +   A+  A+      
Sbjct: 382 TVDALVLTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVD---ALPEALAKVAQD 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|255038732|ref|YP_003089353.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Dyadobacter fermentans DSM
           18053]
 gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053]
          Length = 824

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/395 (18%), Positives = 151/395 (38%), Gaps = 30/395 (7%)

Query: 33  VSSDSRHIQ-AG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRS 88
           + +DSR +   G  IF AI G + DGH F+P+  A G    VV  A        +A    
Sbjct: 18  ILTDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVVEEAAFTGALRETAATWD 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  I VV ++ + L    +    +    ++ + G++GK+ V  ++ Q+           G
Sbjct: 78  DAQIWVVSSSIRALQQLVASKRKQFDIPVVGIAGSNGKTIVKEWLVQLLS--------PG 129

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +   S  + ++++  P  ++       L+           S     ++    ++   G 
Sbjct: 130 RSIVASPKSYNSQIGVPLSVWNLSKEHSLAIFEA-----GISKAHEMEYLQPVMQPTIGI 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN+G  H D  ++++     K+RLF ++         +  D     ++K   NA    L
Sbjct: 185 FTNIGPAHDDGFRSRKQKITEKLRLFTKVKKLIYRKDYHEIDEEISLILKPV-NAFLETL 243

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           S G      H++ V     K +  IS+ GK  +  F      +  + N        +  G
Sbjct: 244 SWGSNYSGSHVQ-VTFNPQKDKTVISLTGKLGNHTFETGFRDDASLENLTHCIVFLLDFG 302

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN----SLEMILKNIRTITSG 382
           ++ A++ E +  L  V  R E     +      +D A+ ++    ++ +     +   + 
Sbjct: 303 LEPAVIQERVLLLKPVSMRLELKEGINHSY--IIDDAYNNDLQGLAMALNFLAQQEQRNR 360

Query: 383 RIIV---VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           + ++   V   G    +  + +   ++    D  I
Sbjct: 361 KTVILSDVLQTGQTPTELYKMVSRLLSEKSIDRLI 395


>gi|330720684|gb|EGG98925.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC2047]
          Length = 482

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 136/418 (32%), Gaps = 49/418 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA + ++          I +V    + L       +       +AV GT GK+
Sbjct: 78  ADVVVTSSAINEENPEIIFARANRIPLVPRA-EMLGELMRYRH------SIAVAGTHGKT 130

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S +  +    G   +F IG     +        +        ++ +           
Sbjct: 131 TTTSLLASLLAEGGLDPTFVIGGLLNSAGTNAKLGASRILVAEADESDASFLH------- 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++ +    TN+  DH+  +    +        F   LP     + 
Sbjct: 184 ---------------LQPMTAIVTNIDADHMSTYGGDFSKLTDTFISFLHNLPFYGLVVA 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDF 302
             DD   K V+    +    V++ G   +  + + V       ++T +     + +D   
Sbjct: 229 CIDDDNVKAVL---PDVSRPVITYGVAEEADY-RAVDIKQTGLRMTFTAKRPNDHQDLQV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIY 359
              +PG   V NA+ A  +    G+    +   L+K   V  RF+  G   T +    + 
Sbjct: 285 TLNIPGHHNVLNAMAAIAVATDEGVSDEAICAALQKFEGVGRRFQICGEFETVNGSVLMV 344

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    ++  L  +R +    R+++++                  L   D  ++ + 
Sbjct: 345 DDYGHHPREVKATLDTVRSSWPDRRLVMLYQPHRYSRTRDLFEDFISVLSEVDSLLLMEV 404

Query: 419 NPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P  E+P        +   I   G    +   +  + I      L   D+L+  G G+
Sbjct: 405 YPADEEPIPGADGRSLCRSIRQRGQVDPVFIDHGEDVIDVLARELKDGDILLTQGAGN 462


>gi|269792484|ref|YP_003317388.1| UDP-N-acetylmuramate/alanine ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100119|gb|ACZ19106.1| UDP-N-acetylmuramate/alanine ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 483

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 124/362 (34%), Gaps = 34/362 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT GK++ +S +  + +R       + PT  I     D               + L
Sbjct: 117 IGVAGTHGKTTTSSMLALVMERC-----DMSPTVAIGGELCDIGCN-----------AKL 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S  V    ++ S    +              TN+  DH+D++ +     +A +R F   
Sbjct: 161 GSGDVMVAELDESDGSFEL-----FSPQVAVVTNVDWDHVDHYASVDQVTDAFVR-FVGK 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +      +I A+D  ++ V+    +     V+  G+   +              +   V 
Sbjct: 215 IKDGGALVICAEDGGNQRVLNGIQSGGDVHVIRYGWGTSWDWGAVNVHPLKGGGIEADVY 274

Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          + GE  V NAL    +    G+    V + L+       R + VG ++
Sbjct: 275 RRGELRGHISLSVSGEHNVLNALATCAVADLFGVSFESVAKVLKSFRGAKRRLQRVG-SA 333

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  +  DY H    ++  +  +R  +   RI+VVF                  L LAD 
Sbjct: 334 DGIDVLDDYGHHPREIKATISAVRGALPGRRILVVFQPHRYTRTQAMYRDFASVLALADR 393

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + +    P  E+P      + I      G+   +   +  +A+    E     DV++  G
Sbjct: 394 SFILPIYPADEEPIEGVSSDLIAGSFPDGVGDPVCCDSFEDAVERVRETCVPGDVVLTVG 453

Query: 467 KG 468
            G
Sbjct: 454 AG 455


>gi|319406005|emb|CBI79636.1| UDP-N-acetylmuramate--alanine ligase [Bartonella sp. AR 15-3]
          Length = 463

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 137/428 (32%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A   GA   +++S+A    +          + VV        L   R      
Sbjct: 46  GHR----AENLGAAEVVIISTAIKKTNPEYIAAQKKHLPVVKRAEMLAELMRFR------ 95

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +   +G     +     I+++  + R+     +      
Sbjct: 96  -RTIAIGGTHGKTTTTSMVAALLD-AGRFDPIVINGGIINAYGTNARMGDGDWM------ 147

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        +L          TN+  +H+D++    A   A  R F
Sbjct: 148 -----------VVEADESDGSFLKLPA---DIAVVTNIDVEHLDHYGNFNAVREA-FRQF 192

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E +P    A++  D    + +  R H+          Q     L  +     K    I 
Sbjct: 193 VENVPFYGFAVMCLDHPEVQTLASRIHDRWVITYGANPQADVRFL-NLSMEGQKACFDIL 251

Query: 295 VEGKDFD-------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +  D        + P+ G+  V NA  A  +   +GI    + + L +   V  RF 
Sbjct: 252 IRSRKTDEKIEINNLILPMSGKHNVSNATAAIAIAHELGISPEAIKKGLAEFEGVKRRFT 311

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G N  G  I+ DY H    ++ +L   R      II V                    
Sbjct: 312 KTG-NWNGVEIFDDYGHHPVEIKAVLHAARESAKRNIIAVIQPHRYTRLYHLFDDFSTCF 370

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           + AD  ++T      E+P      +++   I + G           + I     +    D
Sbjct: 371 NDADTVMITPVYAAGEEPIAGFGSKELVEHIQMAGHRDVRLINTLEDVISIVSTLAKSGD 430

Query: 461 VLVVAGKG 468
            +V  G G
Sbjct: 431 YVVFLGAG 438


>gi|332531950|ref|ZP_08407834.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038577|gb|EGI75020.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 483

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 147/450 (32%), Gaps = 56/450 (12%)

Query: 48  AIVGNKEDGHLFIPQA-----IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILV--- 94
           A  G +  G      A     I  GAE  +     +++D      S+ I    P ++   
Sbjct: 39  AFEGYRITGSDIAHSAMTDRLIKAGAEVFIGHHENNVKDANVVVVSSAIDETNPEIIAAK 98

Query: 95  ---VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
              V   R+   + A  +  +H    +A+ GT GK++  S +  I  ++GL    I    
Sbjct: 99  AARVPVVRRA-EMLAELMRFRHG---IAIAGTHGKTTTTSLIASIYGQAGLDPTFI-IGG 153

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            ++S   + ++           ++       + +                ++ +    TN
Sbjct: 154 LLNSAGSNAKVGKSD-----FLIAEADESDASFL---------------HLQPMVSVITN 193

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  DH+D +             F   LP    A++  D   + E++ R       V++ G
Sbjct: 194 IEEDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVAAELIPRFGRP---VITYG 250

Query: 272 Y-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +     +       N    T++  +G+       +PG     NA  A  +     I +
Sbjct: 251 ESKDADYRMSDFSQSANTCTFTVTNKQGECLTATLNMPGRHNALNATAAIAVAKDQNIAN 310

Query: 330 ALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRII 385
             +LE L+K   +  RF+  G          +  DY H  + +   +  +R      R++
Sbjct: 311 HAILEALQKFEGIGRRFQHYGEFENERGNVMLVDDYGHHPSEVAATIAAVREGWPDKRLV 370

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF 439
           +V+                  L   D  ++ D     EDP      + +   +       
Sbjct: 371 MVYQPHRFSRTRDLYEDFVKVLADVDQLLLLDVYSAGEDPIVGADSKSLCRSLRQRGKEP 430

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +      E        L   D+++  G G+
Sbjct: 431 LHVATNAELAGVLAANLQNNDLVLTQGAGN 460


>gi|237749168|ref|ZP_04579648.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes OXCC13]
 gi|229380530|gb|EEO30621.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 137/436 (31%), Gaps = 61/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ I   A+A+VVS+A    +          I +V      L+       G    
Sbjct: 56  GH--APENIEN-ADAVVVSTAIRDDNPEVLAARKKNIPLVPRAVM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    G       PT  I     ++             ++
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEGGFD-----PTFVIGGRL-NSAGANAGLGAGDFIVA 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + ++               +  +    TN+  DH+D +    A        F 
Sbjct: 160 EADESDASFLN---------------LYPVIEVITNIDADHMDTYGHDFARLKQAFVEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + LP     ++  DD    E+          V + G+      ++ +        +T + 
Sbjct: 205 QRLPFYGRVMLCIDDKNVCEIKPFISKP---VTTYGFHEDA-DVRAIDPKAEGTMMTFTA 260

Query: 296 EGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             KD          PG   V NA     +   +GI+ + +   +E+   V  RF  +GT 
Sbjct: 261 LQKDHPPISIRLNQPGMHNVQNACAVIAIARELGIEDSAIQRAMEQFTGVNRRFTRLGTV 320

Query: 353 SRGGRI---------YVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
               +            DY H  + +   I          R+++ F              
Sbjct: 321 RLPQKTGTSIAEVELVDDYGHHPSEMAATIAAARGAYPDRRLVIAFQPHRYTRTRDLFED 380

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIE---AIRTA 452
               L  AD+ ++ +  P  E P        +   I + G    +   N  E   AI   
Sbjct: 381 FVKVLSGADVLLLGEVYPAGEQPIVAADGRTLARTIRVAGKVDPVFVENIAEMPDAILNV 440

Query: 453 IEMLNKQDVLVVAGKG 468
           IE     DV++  G G
Sbjct: 441 IE---DDDVVITMGAG 453


>gi|330469289|ref|YP_004407032.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
 gi|328812260|gb|AEB46432.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
          Length = 510

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 142/414 (34%), Gaps = 47/414 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V SSA               + V+  +       A+ + G+     +AV GT GK
Sbjct: 74  GVDTVVYSSAIPADHLEMVEARQRGLRVLHRSEA----LAAAMTGR---RTVAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           +S  S V  + Q++G     +  G  S + S A                           
Sbjct: 127 TSTTSMVTMVFQQAGADPSFVIGGEISEVGSGAHHGTGEY------------------FV 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + S      +R           TN+  DH++ +        A    F  L   +   
Sbjct: 169 VEADESDRSFLIYR-----PFVSIVTNIEADHLNTYGDLAN-LEATFAEFARLTDPDGFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           I  ADDA  + +       G RV + G      + L ++ +     +    ++G+   +F
Sbjct: 223 ITCADDAGGQRLAATLRAQGRRVYTYGESADADLRLSEMASSARGVRYLAHIDGRSLGEF 282

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG     N+  A      + +        L     V  RFE  G  + G  +Y +Y
Sbjct: 283 RMPVPGRHMALNSASAVLAAYLLELPLQAAEAALAAFPGVRRRFERKGV-ADGVLVYDEY 341

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           A+   S+ + L+ +R +   GR++VVF                 AL +AD  ++ +    
Sbjct: 342 AYHPTSMTLALQTLREVAGEGRLLVVFQPYRLYRTRDLQSEIAEALAIADELVLLEVFGP 401

Query: 422 SED--PEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            E   P +  A +I  +        F++  +   A           DV+V  G 
Sbjct: 402 GEQRGPGEGSAALIEAVALPAERKVFVDSWD--AAPAEVARRARSGDVVVTMGA 453


>gi|326388914|ref|ZP_08210496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206514|gb|EGD57349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 510

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 137/396 (34%), Gaps = 39/396 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +  ++  + DSR +  G +F+A+ G   DGH F+  A  +GA   +V  A +    
Sbjct: 34  LGGGDFAVSGCAFDSREVMEGDLFIALKGENADGHRFVDGAFLKGAAGALVEQAVAH--- 90

Query: 83  SATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                   P ++V +T   L     A+R        ++ VTG++GK+ V   +     RS
Sbjct: 91  --------PHVLVADTMAGLEALARAARARLDPAARVIGVTGSAGKTGVKEALFAALDRS 142

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                      ++ S+     +        A+    +   G+ H        G       
Sbjct: 143 SRGRAH----RSVKSYNNHVGVPLSLARMPARTRFGVFEMGMNHA-------GELSALTR 191

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++      T +   HI +   + A   AK  +FE L P    AI+ AD  +   ++  A
Sbjct: 192 LVRPHVAIVTTIAPAHIGHFSGEAAIAEAKAEIFEGLEP-GGVAIVPADSPHCALLVAHA 250

Query: 261 HNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDFLFPLPGEFQVY 313
                 V++ G         +  +  +     VT     +        +    PG     
Sbjct: 251 QRHAGLVITFGTAEHADVRLVDALPTVTGGTLVTAEFSARTGAARKLCYTVAQPGAHWAA 310

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-----RIYVD--YAHTS 366
           N+L       A+G D       L ++  +PGR       + GG      + +D  Y    
Sbjct: 311 NSLAVMAAVAAVGGDLGAAGLALAEMAGLPGRGARHAIAASGGDGSGKALLIDESYNANP 370

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            S+   +  +    + R + V G   +  +G+    
Sbjct: 371 ASMSATIAALGATPARRRVAVLGAMRELGEGEAAYH 406


>gi|53803428|ref|YP_114842.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
 gi|59798159|sp|Q604V8|MURC_METCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53757189|gb|AAU91480.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
          Length = 472

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 135/403 (33%), Gaps = 50/403 (12%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           +  A   +  P++   +  + L+      YG      +AV GT GK++  S    I    
Sbjct: 86  EIDAARTARIPVI---SRAEMLAELMRFRYG------VAVAGTHGKTTTTSLTASILAEG 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           GL      PT  I                          QG   V+    S     H   
Sbjct: 137 GLD-----PTFVIGGRLNSVGANAQ------------LGQGEYLVAEADESDASFLH--- 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+ +DH+  +             F   +P    A++ A+D   ++++ R 
Sbjct: 177 -LQPMIAVVTNIDQDHMGTYGNDFGRLKDAFVEFLHHVPFYGAAVLCAEDPGVRDILPRL 235

Query: 261 HNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318
                   + G  +G  I    +  +  + + ++  +G +  +    LPG   + NAL A
Sbjct: 236 SKPYR---TYGEREGVDIRAVGIQRLGLQSRFSVLRQGAEPLEITLNLPGYHNILNALAA 292

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKN 375
            G+   +G+  A++   L     +  RF+     + G        DY H  + L   L +
Sbjct: 293 IGVATELGVADAVIQRALAGFRGIGRRFQINACLNFGDGEITFVDDYGHHPSELAATLDS 352

Query: 376 IR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R      R++VVF                  L   D+ I+ +     E P  I      
Sbjct: 353 ARNAWPDRRLVVVFQPHRYTRTRDLFEDFVQVLSRVDVLILLEVYSAGEAP--IAGADGR 410

Query: 435 GIPGFIEKGNRIEAI-----RTAIEM----LNKQDVLVVAGKG 468
            +   I    +I+ I         ++    L   DV++  G G
Sbjct: 411 SLSRAIRVRGQIDPIFAETPEEVFDILPNVLKPGDVVMTLGAG 453


>gi|319408823|emb|CBI82480.1| UDP-N-acetylmuramate--alanine ligase [Bartonella schoenbuchensis
           R1]
          Length = 468

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 139/427 (32%), Gaps = 48/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + +   A+ +V+S+A    +          + +V        L   R       
Sbjct: 56  GHR--AENLEA-AKVVVISTAIKKTNPEYIAAKEKHLPIVRRAEMLAELMRFR------- 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +   S      I     I+++  + R+     + +    S
Sbjct: 106 RTIAVGGTHGKTTTTSMVAALLDASNFDPMVING-GIINAYGTNARMGCGDWMVVEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  +H+DY+ +  A   A  R F 
Sbjct: 165 D--------------------GTFLKLPADIVVVTNIDSEHLDYYGSFDAVREA-FRQFV 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E +P    A++  D    + +  R  +          Q     L  +     K    + +
Sbjct: 204 ENMPFYGFAVMCLDHPEVQTLASRIDDRWVVTYGANPQADVRFL-NLSMEGQKTHFDVLI 262

Query: 296 EGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +         + + P+ G+  + NA  A  +   +GI +  + + L +   V  RF  
Sbjct: 263 RSRKTNEETELRNLVLPMSGQHNISNATAAIAIAHELGISNESIRKGLAEFCGVKRRFTQ 322

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G+   G  I+ DY H    ++ +L   R    GR+I +                    +
Sbjct: 323 TGSWC-GVEIFDDYGHHPVEIKAVLSAARESAKGRVIAIVQPHRYSRLHDLFDDFVTCFN 381

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDV 461
            AD  ++       E+P      +++   I       +   N +E I   I  +    D 
Sbjct: 382 DADTVMIAPVYAAGEEPITGFGSKELVEHIQMASHRDVRLVNTLEDIALIIATLAKPGDY 441

Query: 462 LVVAGKG 468
           +V  G G
Sbjct: 442 VVFLGAG 448


>gi|257784291|ref|YP_003179508.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
 gi|257472798|gb|ACV50917.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
          Length = 489

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 138/418 (33%), Gaps = 48/418 (11%)

Query: 70  AIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            IV S+A    +         + PI        +LS              +AV GT GK+
Sbjct: 92  VIVTSTAIPETNPEVIRARELSIPIWPRAKMLSYLSR---------GRKTIAVAGTHGKT 142

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +S +  +  + G   SF IG    +  +  + +                   G   V 
Sbjct: 143 TTSSMIATMLDKLGADPSFLIG--GVVEGYDTNGKNG----------------NGQYFVC 184

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S G        +       TN+  DH+D++ + +   N     F  LL KE   +I
Sbjct: 185 EADESDGSFM----FLNPSVVVITNIEADHLDHYGSLENIENTFCE-FMSLLDKEETVVI 239

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFP 305
             D+ +  E+  ++               F+  ++      +  +TI    G+    + P
Sbjct: 240 NGDNPHYVELA-QSTGRHVVTYGFDPSCDFVCKQEERKAGIENPLTIKTPSGQTISVVLP 298

Query: 306 L-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG+  V NA  A  +   +  D       L +      RF  VG +  G  +  DY H
Sbjct: 299 ANPGKHNVANATAAIAVADTLNFDLEEAAAALSQFKGARRRFTHVG-DINGITVVDDYGH 357

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               +   +     +   R++VVF                 A D  D+  V D     E 
Sbjct: 358 HPTEIAATMSAALPLGFKRVVVVFQPHRYSRTQDLADSFTHAFDGIDVLRVMDVFSAGEL 417

Query: 425 P--------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           P           R +  + +P      +R + I   +E ++  D+L+  G G  T  I
Sbjct: 418 PIPGVSGKTVSSRVQAANSVPDVRYIPSRRDLIADLLETVHPGDLLITQGAGDVT-QI 474


>gi|55977152|gb|AAV68370.1| unknown [Herminiimonas arsenicoxydans]
          Length = 414

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 141/386 (36%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA    G+ P  ++AV GT+GK++    +  I Q    +  ++G T+T   + ++ R+ 
Sbjct: 21  MFAEGDDGRIP--VVAVAGTNGKTTTVRLIAHILQA---NKHRVGMTTTDGVYIENQRID 75

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID--YH 220
           T        A + L    V     E +  G+ +  L   +      TN+G  DH+   + 
Sbjct: 76  TGDCSGPRSARNVLMHPDVDAAVFETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFI 135

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG------ 274
            T +     K  + + + P    A++ A D     +      +       G         
Sbjct: 136 STVEDLAVVKRVIVQNVAP-NGTAVLNAADPMVANMAASCPGSVTFFAKDGNHAVLATHR 194

Query: 275 ----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               + + L     + ++      +   D          FQ+ NA+ A G   ++ +   
Sbjct: 195 AKGHRVVFLDGTSIVASEGAFEHRIALADIAITHNGLIGFQIENAMAAIGAAWSLNLSWD 254

Query: 331 LVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +VL  L          PGRF        G  +  DY H  +++E +   +  + + R +V
Sbjct: 255 IVLNGLRTFENSAATTPGRFNLFT--HHGATVIADYGHNPDAIEALTHAVEAMPAKRRMV 312

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V    GDR         +I  D  D  I+ +D   R     ++ A +  G+       + 
Sbjct: 313 VISGAGDRRDDDLRRQTEILGDAFDDVILYEDQCQRGRADGEVLALLRQGLTKAKRAKSI 372

Query: 446 IE------AIRTAIEMLNKQDVLVVA 465
            E      AI TA+  L   D+ ++ 
Sbjct: 373 KEIHGEFLAIDTALASLQAGDLCLIL 398


>gi|55981048|ref|YP_144345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
 gi|55772461|dbj|BAD70902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
          Length = 438

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 136/435 (31%), Gaps = 56/435 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            + ++   S     G +F A+ G    G  FIP+A+A+GA  ++   A            
Sbjct: 36  PVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARGASLVLADQAGPAT-------- 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               L V++  + L      L    P  +LAV G+SGK++    + Q             
Sbjct: 88  ----LEVEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKEALAQGLGLPAPPGNLNT 143

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +  F   +  +  +          +   GV      A    L        K     
Sbjct: 144 APPLVRFFWHLDPQSPGA----------VVELGVDRQGEMAELFALA-------KPHLAV 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T LG +H++   T +     +  L                    ++           +L
Sbjct: 187 LTALGEEHLEAFGTLEKAVQEEAHLLRAPTALVG-----------EQAAPLVLGLREDLL 235

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G+       + +     + +              P PG    Y AL A      +G+ 
Sbjct: 236 VYGFAEGTFRGRDLELGLRESRFRY----GGLHVRVPYPGLGPAYGALAALAAAEVLGLS 291

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVV 387
              V E L +L + PGR E   T   GG ++V+ A+ +N L +           GR   V
Sbjct: 292 LEEVAERLARLTLPPGRME---TREVGGVVFVNDAYNANPLSVKAGLRWLAAQPGRKWAV 348

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            G   +  +    +  ++A + A + +    +P    P         G        +  E
Sbjct: 349 LGEMRELGRESLRLHLEVAEEAARLGL----SPLYLGPHARHQAAFSGEA----VESLEE 400

Query: 448 AIRTAIEMLNKQDVL 462
           A+      +   D++
Sbjct: 401 ALAWLKARVAPGDLV 415


>gi|110634356|ref|YP_674564.1| UDP-N-acetylmuramate--L-alanine ligase [Mesorhizobium sp. BNC1]
 gi|123057820|sp|Q11GS6|MURC_MESSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110285340|gb|ABG63399.1| UDP-N-acetylmuramate--L-alanine ligase [Chelativorans sp. BNC1]
          Length = 465

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 86/429 (20%), Positives = 145/429 (33%), Gaps = 49/429 (11%)

Query: 58  LFIPQAIAQ-G-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            FI  A    G AE +V+SSA    +          + +V        L   R       
Sbjct: 55  AFIGHAAENLGDAEVVVISSAIKRDNPEYVAARERHLPIVRRAEMLAELMRFR------- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL    I     I+ +  + R+     + +    S
Sbjct: 108 QAVAIGGTHGKTTTTSMVAALLDAGGLDPTVING-GIINVYGTNARMGEGDWMVVEADES 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  +H+D++ +      A  R F 
Sbjct: 167 D--------------------GTFLKLPADIAVITNIDPEHLDHYGSFDKVREA-FRQFV 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           E +P     ++  D    + ++ R  +   RV++ G      +  +     +      + 
Sbjct: 206 ENVPFYGLGVMCIDHPEVQALVSRIEDR--RVVTYGENLQADVRFENHRMENGHSVFDVI 263

Query: 295 VEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +         D   P+PG   V NA  A  +   +G+    + + L     V  RF 
Sbjct: 264 IRARKSDAVKAMRDLRLPMPGRHNVSNATAAIAVANELGMGEEAIRKGLAAFGGVKRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             GT   G  I+ DY H    +  +LK  R  TSGRII +                    
Sbjct: 324 LTGTW-NGISIFDDYGHHPVEIRAVLKAAREATSGRIIAIAQPHRYTRLRDLFDEFSACF 382

Query: 408 DLADIAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNR----IEAIRTAI-EMLNKQD 460
           + AD  +V       E P   I +E ++  +     +  R     EAI   + E  N+ D
Sbjct: 383 NDADTVLVAPVYAAGESPIAGISSEALVASLRAAGHRDARFIPGPEAIAPIVREAANEGD 442

Query: 461 VLVVAGKGH 469
            +V  G G+
Sbjct: 443 FVVFLGAGN 451


>gi|297621520|ref|YP_003709657.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
 gi|297376821|gb|ADI38651.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
          Length = 532

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 65/375 (17%), Positives = 126/375 (33%), Gaps = 27/375 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           +K L   A +   K    ++ +TG+ GK+S    + Q+ Q             T+ S   
Sbjct: 162 QKILIKGAKQKLKKIDPYVIGITGSYGKTSTKDALGQLLQ------------ITLGSTFW 209

Query: 159 DNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            ++               L        + + A   G  +         AG  T +G  H+
Sbjct: 210 PSKGINTDMGITRSIRERLEPLTKYAVIEMAAYGTGSIRRLCGLTPPHAGIITGIGLAHL 269

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF- 276
           D    Q+  + AK  L  + +P+E   I   D+  ++++          +  +    +  
Sbjct: 270 DRFGDQKTIYQAKSEL-AQAIPEEGILICNGDNPGTRQISAEFKKQTTLLYGLDNSKRDL 328

Query: 277 -IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              +  +       +  I  EGK F+ +  L G   + N   A  +  A+G         
Sbjct: 329 DCWITPLELTKEGTRFRIEWEGKSFEGITSLYGNTSLSNCAGAFAMACALGAQPDFAAAA 388

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--- 392
           L  L  V  R +      R   I+  Y          L  +  + + + I++        
Sbjct: 389 LSTLIPVNNRLQISRDEER-TYIHDAYNSNPEGFLSALHVLHQMPARKRILMTPGMIELA 447

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAI 449
           +++      +G  A  + D+AI+     R    E +   +I G       I   +R EA 
Sbjct: 448 EQNLNMHHKVGYQAAKVCDLAILVGKTNR----ESLSLGLIAGGFTQSQIITAEHRSEAF 503

Query: 450 RTAIEMLNKQDVLVV 464
                ++ K D +++
Sbjct: 504 EKLAAVMEKGDAVLI 518


>gi|296133262|ref|YP_003640509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296031840|gb|ADG82608.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 473

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 143/405 (35%), Gaps = 35/405 (8%)

Query: 19  SIFPMQWRERKINEVSSDSR--HIQAGWIFVAIVG-----NKEDGHLFIPQAIAQGAEAI 71
            +      ++KI  +   SR   ++ G ++  + G             I  A+ +GA A+
Sbjct: 14  GVLRQGDPQQKITGIM--SRCKAVKPGQVYFDVKGGPGSDEN------ILVALDKGAVAL 65

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+S       F+        ++ V           S    +    ++ VTGTSGK++   
Sbjct: 66  VISKHKKKLPFN---NHKISVIAVPKVWDAFWDCVSYHRDQFNIPVVGVTGTSGKTTTKE 122

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I ++      +      + SF   +             +   +        +  + 
Sbjct: 123 MIASIFKKKWGKILKTEQNLNLPSFVPGH------------IMRLTAEHKAAVFEIGMNR 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G    +   IK + G  TN+G+ H+    +++A    K  + E  +PK    +I ADD 
Sbjct: 171 RGHVAKQSRVIKPMIGIITNIGQAHVGMLGSKEAVIEEKGSIIEG-IPKNGYLLINADDE 229

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEF 310
            S ++     +   + L  G + K  ++ +  A           + GK+     P+ G+ 
Sbjct: 230 NSGKL--DLSSFQGKTLRFGIKNKADYVAEDIATGLDFVSFKTVIYGKEEQIRVPISGKH 287

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            VYNAL A      + I+   + + L        R + V   +    I   Y    +S+ 
Sbjct: 288 NVYNALAAIAASTLLNIEVKYIKQGLAGFRRPKLRLQLVKGINDSLLINDTYNANPDSVI 347

Query: 371 MILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             L+ ++ +      I V G   ++         ++   + ++ I
Sbjct: 348 AGLEVLKELAKDRTSIAVLGNMLEQGVFTNEAHQRVGRRVQELGI 392


>gi|226940889|ref|YP_002795963.1| cyanophycin synthetase [Laribacter hongkongensis HLHK9]
 gi|226715816|gb|ACO74954.1| ATP-grasp enzyme-like D-alanine-D-alanine ligase [Laribacter
           hongkongensis HLHK9]
          Length = 856

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 140/387 (36%), Gaps = 33/387 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA    G+ P  ++AV+GT+GK++       +  ++G     +G T T   +    ++ 
Sbjct: 462 MFAGDDNGRIP--VVAVSGTNGKTTTVRLSAHLIAQTGKR---MGMTVTDGVYVNGRQID 516

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           +        A + L    V     E +  G+ +  L   +      TN+G  DH+   Y 
Sbjct: 517 SGDCSGPRSARNVLMHPDVDAAVFETARGGMLREGLGFDRCDVAVVTNVGEGDHLGLNYI 576

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIH 278
            T       K  +  + +     A++ A D     +      +       G+        
Sbjct: 577 YTLDELAVLKS-IVVQNVSPSGMAVLNAADPMVARMAASCPGSVTFFAHDGHHPVINAHR 635

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGIDS 329
            +    I+ +    +  EG D    F L            FQ+ N++ A G   A+GI  
Sbjct: 636 AQGRRVIYVEDGQIVCAEGGDVRMTFDLAQVPLTAGGRIAFQIENSMGAVGAAWALGIAQ 695

Query: 330 ALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
             +   L          PGRF     + RG  +  DY H  ++++ +++ + T+   R I
Sbjct: 696 EQIAAGLASFVSDAATAPGRFNLF--DYRGATLIADYGHNPDAMQALVQAVETLPGQRRI 753

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPG------ 438
           VV    GDR         +I     D  ++  D   R     ++ A +  G+ G      
Sbjct: 754 VVISGAGDRRDEDIRRQTRILGTAFDEVVLYQDACQRGRADGEVVALLREGLEGAPRTRQ 813

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             E      AI TA+  L   D+ ++ 
Sbjct: 814 IDEIQGEFLAIDTALARLTPGDLCLIL 840


>gi|107021639|ref|YP_619966.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116688584|ref|YP_834207.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
 gi|123371911|sp|Q1BZG2|MURC_BURCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222962|sp|A0K487|MURC_BURCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|105891828|gb|ABF74993.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116646673|gb|ABK07314.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
          Length = 465

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 141/430 (32%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +       +  + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            EG+     +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNK 458
             D  ++T+     E   P      +   +               +  +A+         
Sbjct: 382 TVDALVLTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKV---AQN 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|120609516|ref|YP_969194.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
 gi|166222947|sp|A1TKD2|MURC_ACIAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120587980|gb|ABM31420.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
          Length = 475

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 148/432 (34%), Gaps = 55/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA+A+V S+A    +          I VV      L+       G    
Sbjct: 56  GH---AAAHIEGADAVVTSTAVQSDNPEVIAARERKIPVVPRALM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   +GL      PT  I                L  A +
Sbjct: 108 --IAIAGTHGKTTTTSLVTSVLAEAGLD-----PTFVIGGR-------------LNSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA     D   L+ +  +    TN+  DH++ +        +    F 
Sbjct: 148 NAKLGQGEYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFGRLKSAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
             +P    AI+  D+   +E++    +  C V S G+          V A   + +  + 
Sbjct: 205 HRMPFYGTAILCTDNPAIREIL---PDVTCPVTSYGFSEDAQVRAVDVRADAGRMRFRVQ 261

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D D +  L GE  V NAL A  + + + I    +L  L +   V  RF+  G
Sbjct: 262 RRNGVTLPDLDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYG 321

Query: 351 T-NSRGG---RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              ++GG    +  DY H    +   L   R      R+++ F                 
Sbjct: 322 ELPAQGGGTFTLIEDYGHHPVEMTATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVK 381

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEML 456
            +  AD  ++T+     E P  I A     +   +    ++E +         R   +  
Sbjct: 382 VMGSADAVLLTEVYAAGEAP--IVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIADNA 439

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 440 RGGDVVLCMGAG 451


>gi|251792024|ref|YP_003006744.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533411|gb|ACS96657.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 476

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 147/436 (33%), Gaps = 56/436 (12%)

Query: 51  GNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           G K     FI  +     GA  +V+SSA    +          I V+   +  L+     
Sbjct: 63  GAKV----FIGHSAENIIGASVVVISSAIHGDNPEVMAAKKARIPVIQRAQM-LAELMRF 117

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +G      +AV GT GK++  + V  I  ++GL    +      S+    +   +    
Sbjct: 118 RHG------IAVAGTHGKTTTTAMVSMIYAQAGLDPTFVNGGLVKSAGTNAHLGCS---- 167

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                ++       + +                ++ +    TN+  DH+D +        
Sbjct: 168 --RYLIAEADESDASFL---------------HLQPMISIVTNIEPDHMDTYHGDFDEMK 210

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHN 287
                F   LP    A++ ADDA   ++M      G +V++ G+ +     ++       
Sbjct: 211 QTYVNFLHNLPFYGLAVLCADDA---DLMSLVPQVGRQVITYGFSENADYRIEDYQQTGF 267

Query: 288 KQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   T I   G+  D L  +PG     NA  A  +    GI +  +L  L        RF
Sbjct: 268 QGHYTVICPNGERIDVLLNVPGRHNALNATAALVVAKEEGIKNEAILAALADFQGAGRRF 327

Query: 347 EFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIM 402
           + +G     +    +  DY H    + + ++  R    + R++++F              
Sbjct: 328 DQLGQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDD 387

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIE---AIRTA 452
               L   D  I+ D  P  E P      + +   I + G    I   +  +    I   
Sbjct: 388 FVQVLSQVDALIMLDVYPAGESPIVGADSKALCRSIRNLGKVDPILVSDTAQLGDVIDQI 447

Query: 453 IEMLNKQDVLVVAGKG 468
           I      D+++  G G
Sbjct: 448 I---QDGDLILAQGAG 460


>gi|216264224|ref|ZP_03436216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215980697|gb|EEC21504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 463

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 138/400 (34%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +    S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFMALKNMILDLN 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
              +  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFL 404


>gi|15594649|ref|NP_212438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
 gi|3915785|sp|Q44777|MURF_BORBU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2688162|gb|AAC66644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
          Length = 464

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 138/400 (34%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +    S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFMALKNMILDLN 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
              +  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFL 404


>gi|221217708|ref|ZP_03589176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223889004|ref|ZP_03623595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224533118|ref|ZP_03673718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224533787|ref|ZP_03674375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225550109|ref|ZP_03771069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|221192385|gb|EEE18604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223885820|gb|EEF56919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224511845|gb|EEF82246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224513080|gb|EEF83443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225369221|gb|EEG98674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|312149582|gb|ADQ29653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi N40]
          Length = 463

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 138/400 (34%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +    S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLEGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFMALKNMILDLN 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
              +  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFL 404


>gi|254454230|ref|ZP_05067667.1| cyanophycin synthetase [Octadecabacter antarcticus 238]
 gi|198268636|gb|EDY92906.1| cyanophycin synthetase [Octadecabacter antarcticus 238]
          Length = 957

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 133/380 (35%), Gaps = 35/380 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I ++TGT+GK++V+  V  I + SG     +G  +T   +   N            A  
Sbjct: 496 PIASITGTNGKTTVSRMVAHIHKLSG---NMVGLATTDGVYIDGNLTVKGDLTGPRAAQM 552

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L    V    +E +  GL +  L   +   G+  N+  DH+      T +     K  +
Sbjct: 553 ILRDPTVDAAILETARGGLLRSGLGYERCDVGAVLNIQADHLGLKGVETIEDLARVKRIV 612

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--------HLKKVCAI 285
            E        A++ ADD    ++ +         +++      +            +   
Sbjct: 613 IE---VATDTAVLNADDELCLKMAEHTKADHICYVTMNAHHPLVREHVRIGGRAVVLEQG 669

Query: 286 HNKQQVTISVEGKDFDFLFPLPG--------EFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            N   +TI     +   ++               V NA+ AA +C ++G     + + L 
Sbjct: 670 MNGHMITIYEHSSNIQLMWTHLIPATIDGKAMHNVQNAMFAAAICYSMGKSLEDIRQGLR 729

Query: 338 KLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
                  +             ++ +DY H   ++E + K    +   GR I+ F   GDR
Sbjct: 730 TFATSYFQAPGRLNIFEEHPFKVILDYGHNPAAIEAMTKLCTQLEPKGRKIISFSMPGDR 789

Query: 395 DQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKI-----RAEIIHGIPG--FIEKGNRI 446
                     I     D  I   DD  R   P ++      A I +G+P        + +
Sbjct: 790 RNEDYAAAAAIVAGKFDHYICRVDDGLRGRGPSEVPDLLREALIENGVPDDLIQVIPDEV 849

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           EA+  A++M    D++++ G
Sbjct: 850 EAVDAALKMGQTDDLVLLFG 869


>gi|221213276|ref|ZP_03586251.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
 gi|221166728|gb|EED99199.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
          Length = 465

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 140/430 (32%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARAQRVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
            EG+     +  LPG   V NAL A  +   +G+    + + L + + V  RF+    V 
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVP 321

Query: 351 TNSRG-GRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALD 408
           T   G   +  DY H    +   +   R    G R+I+ F                  L 
Sbjct: 322 TADGGRYTLIDDYGHHPVEMAATIAAARGAFPGRRLILAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDN---------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNK 458
             D  ++T+              +   +         P F+E  +   A+  A+      
Sbjct: 382 TVDALVLTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVD---ALPEALAKVAQD 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|167747842|ref|ZP_02419969.1| hypothetical protein ANACAC_02571 [Anaerostipes caccae DSM 14662]
 gi|167652737|gb|EDR96866.1| hypothetical protein ANACAC_02571 [Anaerostipes caccae DSM 14662]
          Length = 433

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 126/393 (32%), Gaps = 47/393 (11%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V ++A     +++ A ++   P        K  +L    ++    +N +AV+GT GK++
Sbjct: 73  VVYTAAIHPENEEYKAALQKGIP------LMKRATLLGQMMHNY--KNAVAVSGTHGKTT 124

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  I   +G +   I     I      N     S +++ +A  Y +S         
Sbjct: 125 TTSMLSHIL-LAGETDPTI-TVGGILDIIDGNIRVGHSNVFVTEACEYTNSFLEFF---- 178

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                 N+  DH+D+        ++  + F   LP++   ++  
Sbjct: 179 ---------------PKISIILNIEEDHMDFFHDINEIRDS-FKKFAHKLPEDGLLVLNG 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKDFD-FLF 304
           +      +++       + ++ G              ++        +  EG   D    
Sbjct: 223 EIDDISYIVE---GLKAKYVTYGIDNDEFTYTAKNISYDSMGHGHFDLYKEGTFVDSLSL 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   + NAL AA +   +G+    V   L        RFE+ GT   G  +  DYAH
Sbjct: 280 NVNGLHNINNALSAAAVADFLGLSIDTVKAGLLTFSGAKRRFEYKGTCG-GFTVIDDYAH 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               ++  L   +      +  VF                 AL   D  I+TD     E 
Sbjct: 339 HPTEIKATLNACKNYPHKELWCVFQPHTYTRTNAFLDEFAEALSQCDHVIITDIYAAREK 398

Query: 425 ------PEKIRAEIIHGIPGFIEKGNRIEAIRT 451
                    +  +I           +  +AI  
Sbjct: 399 DTGMVHARDLADKIEKTGTDVRYIKD-FDAIEE 430


>gi|313903885|ref|ZP_07837274.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313466073|gb|EFR61598.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 610

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 15/255 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E+ S S  ++ G +FVAI G + DG  F  +A+ +GA  +V       Q     +   
Sbjct: 25  VGEIRSHSARVEPGDLFVAIPGRRHDGAAFAGEALRRGARVVVA-----QQPPGQPLPPG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V   R  LS  A+  YG       ++ VTGT+GK++    +  +   +G+ +  I
Sbjct: 80  VSWLQVPCARSALSRLAANRYGHPSRRLVVVGVTGTTGKTTTTLLLHHLLSATGIPAGLI 139

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G              LTTP P+ L + L  ++  G     +E SS G DQ R+D +    
Sbjct: 140 GSLEVRAGGHCWPGNLTTPDPLDLHRYLRVMADAGCRVAVMEVSSQGADQRRVDDVAFDL 199

Query: 207 GSFTNLGR-DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           G  TNL   +H++YH T + Y  AK R    + P     +        +  ++    A  
Sbjct: 200 GVVTNLAPLEHLEYHPTYEDYAAAKGRFVAMIPPGGGVLMH-----EGEAALRLGPYARA 254

Query: 266 RVLSVGYQGKFIHLK 280
            V+  G +G   HL+
Sbjct: 255 PVVLFG-RGPACHLR 268



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 2/104 (1%)

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G     N + A G  + +G+D   V   L        R + +    R   + 
Sbjct: 349 VWLETQLLGPHHALNVVAAVGAALWLGLDPGTVARALPGFAAPRRRTQVLM--RRPFTVI 406

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            D A   +SL         I   R +VV+   G R        G
Sbjct: 407 DDTAGRPDSLAACFAVAARIPHRRAVVVYAVRGGRGAAINYANG 450


>gi|30248927|ref|NP_840997.1| cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
 gi|30138544|emb|CAD84834.1| Cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 856

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 142/389 (36%), Gaps = 37/389 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LFA     + P  ++AVTGT+GK++    +  + +    +  ++G   T   F     + 
Sbjct: 460 LFAPGENARIP--VIAVTGTNGKTTTVRLIANMLE---NNRLRVGIACTDGVFVNGQCVD 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           T        A + L    V    +E +  G+ +  L          TN+GR DH+     
Sbjct: 515 TGDCSGPQSARNILFHPEVDAAVLETARGGILREGLGFDYCDVAVVTNIGRGDHLGLANI 574

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL- 279
            T +     K  + E + PK   A++ ADD     V+  A +    V       +   + 
Sbjct: 575 NTAEELAAVKRTIVENVNPKTGVAVLNADDPL---VLGMASHCPGNVTFFSRNHRHPVIL 631

Query: 280 -----KKVCAIHNKQQVTISVEGKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGI 327
                 K         + ++  G +                 FQ+ NA+ + G  +AI +
Sbjct: 632 EQRVQGKRVIYMEDHHIIVAEAGTERRISLSQIRLTKNGMISFQIDNAMASIGAGLAIEL 691

Query: 328 DSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           D   +   L         VPGRF     N R   +  DY H  +++E ++  I  I + +
Sbjct: 692 DWTTICAGLADFVSDAQTVPGRFNLF--NYREATLIADYGHNPDAMEALVCAIDHIPAKK 749

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFI-- 440
             VV    GDR      +  +I  D+ D  ++  D   R     ++   +  G+      
Sbjct: 750 RTVVISAAGDRRNEDIRLQTRILGDVFDEVVLFQDKCQRGRADGEVLGLLREGLENAKRV 809

Query: 441 ----EKGNRIEAIRTAIEMLNKQDVLVVA 465
               E     +AI TA+  L   ++ ++ 
Sbjct: 810 RKVSEIRGEFKAIDTALTNLEAGELCLIL 838


>gi|186477420|ref|YP_001858890.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phymatum
           STM815]
 gi|229486477|sp|B2JHF9|MURC_BURP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|184193879|gb|ACC71844.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia phymatum STM815]
          Length = 464

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 138/429 (32%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +       +  I +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-I 293
             LP    A++  DD   KE++         ++  G+          V A   K   T +
Sbjct: 205 HRLPFYGIAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVEAREGKMHFTAM 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
             +    D +  LPG   V NAL A  +   + +  A +   L   + V  RF+  G   
Sbjct: 262 REDAPPIDIVLNLPGLHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVT 321

Query: 351 -TNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T+     +  DY H    +   I          R+++ F                  L 
Sbjct: 322 VTSGGAYTLVDDYGHHPVEMAATIAAARGAFPDKRLVLAFQPHRFTRTRDCFEDFVKVLS 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--------NRIEAIRTAI-EMLNKQ 459
             D  ++T+     E P  I A     +   I           + ++ +  A+  ++   
Sbjct: 382 TVDALVLTEVYSAGEAP--IVAADGRSLTRAIRVAGKVEPVFVDTVDEVPDALGAIVRDG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|170696722|ref|ZP_02887837.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
 gi|170138385|gb|EDT06598.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
          Length = 467

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 137/431 (31%), Gaps = 55/431 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A     GA A+VVS+A    +       +  I +V      L+       G      
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVM-LAELMRLKQG------ 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  +    GL      PT  I                  + +S  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLISAG 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++  +       +           +  +    TN+  DH+D +    A        F   
Sbjct: 147 ANARLGTGDFIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISV 295
           LP    A++  DD   KE++         ++  G           V A   K   T +  
Sbjct: 207 LPFYGIAVLCVDDPNVKEILPFVSKP---IIRYGLAPDAQVRAVNVEARDGKMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---- 351
           +    D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G     
Sbjct: 264 DAAPLDIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVT 323

Query: 352 ---NSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
                RG   +  DY H    +   +   R    GR +V+ F                  
Sbjct: 324 SDGEPRGAYTLVDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKV 383

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLN 457
           L   D  ++T+     E P  I A     +   +    ++E +              ++ 
Sbjct: 384 LSTVDALVLTEVYSAGEAP--IVAADGRALARALRVAGKVEPVFVDTVDEVPDALAALVR 441

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 442 DGDVVITMGAG 452


>gi|118594413|ref|ZP_01551760.1| UDP-N-acetylmuramate--L-alanine ligase [Methylophilales bacterium
           HTCC2181]
 gi|118440191|gb|EAV46818.1| UDP-N-acetylmuramate--L-alanine ligase [Methylophilales bacterium
           HTCC2181]
          Length = 457

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 138/426 (32%), Gaps = 49/426 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           +   A     G + IV S+A +  +       +  I ++    + LS       G     
Sbjct: 54  YTKHAAKNITGVDVIVSSTAITKNNIEIKEGKDKNIPIIARA-EMLSELMRFKTG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK+S  S +  I  +       + PT  I       +               
Sbjct: 108 -IAVAGTHGKTSTTSLLASILSQ-----GNLDPTFVIGGRINSMKANAK----------- 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G   V     S     H    +  I    TN+ RDH++ +Q       A    F  
Sbjct: 151 -LGAGDIFVVEADESDASFLH----LNPINTIVTNIDRDHLEAYQGDFERLKATYLDFIH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS- 294
            +P  S   +  DD    E+ K   +    +++ G   +       +    NK    +  
Sbjct: 206 QVPFYSNVFLCVDDD---EINKIIPDIMRPIVTYGLSAQAQIQATSIVHFENKMNFVVHD 262

Query: 295 --VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR---FEFV 349
              +   FD    LPG   V N L A  + +  G+    + + L     V  R   +  +
Sbjct: 263 KYYKKIKFDININLPGIHYVNNTLAAIAVGLEFGVSIKNIQKALRDFEGVSRRYDVYRGI 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             N++   +  DY H    +  +L+  +    +  + +VF                   +
Sbjct: 323 YKNNKNFIVVDDYGHHPTEIRAVLEATKKGFPNKEVALVFQPHRYSRTKDCYEEFLSVFN 382

Query: 409 LADIAIVTDDNPRSED------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +     + D     ED       EK+  +I       +  G R  A +  ++ + +  ++
Sbjct: 383 IPQKLFLFDIYSAGEDHIPGISSEKLLKDIKRSNAYHLPNGKR--ANKIILDNIAEDSII 440

Query: 463 VVAGKG 468
           ++ G G
Sbjct: 441 LIMGAG 446


>gi|161526004|ref|YP_001581016.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|189349279|ref|YP_001944907.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|229486476|sp|A9AI95|MURC_BURM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160343433|gb|ABX16519.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans ATCC
           17616]
 gi|189333301|dbj|BAG42371.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia multivorans ATCC
           17616]
          Length = 465

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 142/430 (33%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARAQRVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VG 350
            EG+     +  LPG   V NAL A  +   +G+    + + L + + V  RF+    V 
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVP 321

Query: 351 TNSRG-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           T   G   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 TADGGRYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDN---------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNK 458
             D  ++T+              +   +         P F+E  +   A+  A+      
Sbjct: 382 TVDALVLTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVD---ALPEALAKVAQD 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|120609511|ref|YP_969189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587975|gb|ABM31415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
          Length = 501

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 157/459 (34%), Gaps = 50/459 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +QAG +FVA+ G + D + F+        +A    +A +L        +  P 
Sbjct: 36  VHTDTRTLQAGDLFVALRGERFDANDFLA-------QARAGGAAAALAHPGRLDAAGLPG 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T   L   A+    +    ++ VTG++GK++V   +  + +     +      +T
Sbjct: 89  IEVPDTLAALGALAAGWRARLDLPLVGVTGSNGKTTVTQMIASVLRAWKGDAAF----AT 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +F  D  +            + +   G+ H    A   G+        +       N 
Sbjct: 145 QGNFNNDIGVPLMLLRLRDAHEAAVIELGMNHPGEIAVLAGIA-------RPTVALVNNA 197

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H+++  T QA       +   L P +  A+  A D Y+   + R      R L+   
Sbjct: 198 QREHLEFMHTVQAVAEENGSVISAL-PPDGVAVFPAADTYAP--LWRGLAGTRRCLTFCD 254

Query: 273 Q---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +      +             V I      FD    + G   V NAL A    +A G   
Sbjct: 255 RAGVAADVRCTDARWETGAWNVQIDTPQGAFDGTLRIAGRHNVANALAATACALAAGAPL 314

Query: 330 ALVLEHLEKLHVVPGR--------FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             +   L     V GR         +  G   R   +   Y    +S+   +  +  +  
Sbjct: 315 DAIARGLAAFEPVKGRSRAFVATVAQPGGAPRRITAVDDTYNANPDSMRAAIDVLAELPG 374

Query: 382 GRIIVVFGC---------------GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +++V+                  G  R++G   +    AL +  +          +D  
Sbjct: 375 PQLLVMGDMGEVGDQGPQFHAEAGGHARERGIGRLFALGALGIHAVQAFGPQARHFDDMA 434

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVL 462
            + A +    P     + KG+R   +   ++ L   DVL
Sbjct: 435 SLLAAVRKAAPESGSVLVKGSRFMKMEQVVQALEAPDVL 473


>gi|226226830|ref|YP_002760936.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090021|dbj|BAH38466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 474

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 153/451 (33%), Gaps = 45/451 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + +  +S+D+R I  G +FVA+ G++ D H F+  A   GA A VVS      D +  + 
Sbjct: 43  QPLAGISTDTRRIARGDVFVALRGDRFDAHDFLATAKDAGAAAFVVS------DATRAVG 96

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P  VV +T   L   A         +++AV G++GK+S    ++     +       
Sbjct: 97  LGVPTYVVPDTLIALGQLAHTWRTVWGRHVIAVAGSNGKTSTKELLKAALSGTFEVHATT 156

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  + +                    L+      +  V +  ++ G              
Sbjct: 157 GNLNNLIGVPLT-------------LLAIPPHADIAVVELGTNAPGEVATLRAMSAPDVA 203

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++G +H++           +  +F    P    AII        EV   A      V
Sbjct: 204 VLTSIGEEHLEGLGDLAGVLREECDVF----PGVRLAIIPVAHP---EVSPMASERAEAV 256

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G     +  ++       +     V+G    F  PL G  Q  NA++A     A G+
Sbjct: 257 VTAGLTDADVAPEQWGLDDEGRP-WFDVDG--VHFTLPLRGAHQAANAMLAVAAARACGV 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                   +     VP       T  +   I   Y     S+   L  +  +  GR  V 
Sbjct: 314 PLESAAAGMAA-MPVPNMRGVWETIGQTTVINDAYNANPPSMRAALALLDRVGEGRQRVA 372

Query: 388 FGCGGDR----DQGKRPIMGKIALDLADIAIVT----DDNPRSEDPEKIRAEIIHGIPGF 439
           F             +   + + AL  +   IV      D  R   P+ I A       G 
Sbjct: 373 FLGTMRELGAQADVQHDDIARAALVSSADVIVGVGAFGDAFRRVAPDAINA-----ASGR 427

Query: 440 IEKGNRIE-AIRTAIEMLNKQDVLVV-AGKG 468
           +   +  E A   A   +N+  V+++ A +G
Sbjct: 428 VIVADEPESAWTAAAPRVNRNAVILLKASRG 458


>gi|319424769|gb|ADV52843.1| UDP-N-acetylmuramate/alanine ligase [Shewanella putrefaciens 200]
          Length = 488

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 143/410 (34%), Gaps = 44/410 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           +S+A + ++          + +V    + L+      +G      +A+ GT GK++  S 
Sbjct: 85  ISTAINAENPEIIAAKELRVPIVRRA-EMLAELMRYRHG------VAIAGTHGKTTTTSL 137

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +  ++G       PT  I                    ++       + +       
Sbjct: 138 IASVYGQAGRD-----PTFVIGGLLNSAGTNARLGTSRY-LIAEADESDASFL------- 184

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                    ++ +    TN+  DH+D +        +    F   LP    A++  DD  
Sbjct: 185 --------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPV 236

Query: 253 SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEF 310
            +E+M R       +++ G+     +         ++ + T+  +GK D D L  LPG+ 
Sbjct: 237 VREIMPRIGR---HLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNLPGQH 293

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSN 367
            V NAL A  +     ID + +++ L +   +  RF+ +G   T      +  DY H  +
Sbjct: 294 NVLNALAAIAVATEDEIDDSALIQALAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPS 353

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
            +   +K  R      R+++ +                  L   D  ++ D     E P 
Sbjct: 354 EVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEVLSQVDCLLLLDVYSAGEAPI 413

Query: 426 -----EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  +   I + G    I   +  +      ++L + D+L+  G G+
Sbjct: 414 TGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLLTQGAGN 463


>gi|291535568|emb|CBL08680.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           M50/1]
          Length = 459

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 136/418 (32%), Gaps = 42/418 (10%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVAS 131
               L  ++A IR + P       R    L  + L G+  +N    +AV GT GK++  S
Sbjct: 68  DGIDLIVYTAAIREDNPEYAAAKERSIPMLSRAELLGQIMDNYNNSIAVAGTHGKTTTTS 127

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + QI   +            I    + N     S I+L++A  Y +S    +       
Sbjct: 128 MISQILLAAKADPTI--SVGGILKAIEGNIKVGKSDIFLSEACEYTNSFLHFY------- 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                              N+  +H+D+ +  Q   N+  R F     K+   II  +  
Sbjct: 179 ------------PRYSVILNVEAEHLDFFKDIQDIRNS-FRKFAGNTKKDGAIIINGEIE 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPG 308
              E+         +V++ G      +                 +       D    +PG
Sbjct: 226 NYTEL---TSGLDPQVITFGLNDSCDYYPSDITFDKTACASFTAMHHGTPVMDVKLHVPG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL A  L + +GI +  +L  L        RF++ G    G  I  DYAH    
Sbjct: 283 MHNVSNALAAIALSLDLGISTDAILAGLSAFGGADRRFQYKGC-VDGVTIIDDYAHHPTE 341

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           +   L   +     R+++ F                  L +AD+ ++ D     E     
Sbjct: 342 IRATLTAAKNYPHKRLVLAFQPHTYSRTKAFLDDFADVLSMADVVVLADIYAAREKNTYG 401

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                I A++           +  E  +  ++     D+L+  G G     IV  GE 
Sbjct: 402 ISSRDILAKLKEKGTECYYFPSFEEIEKFLLKNCINGDLLITMGAGD----IVNVGEH 455


>gi|281418842|ref|ZP_06249861.1| cyanophycin synthetase [Clostridium thermocellum JW20]
 gi|281407926|gb|EFB38185.1| cyanophycin synthetase [Clostridium thermocellum JW20]
          Length = 882

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 150/423 (35%), Gaps = 41/423 (9%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           TR   +     L+ +   + + +   +G +   +  + I         ++G TST   F 
Sbjct: 460 TRNVAADILDMLFPEASPHSIPIVSVTGTNGKTTTTRLIGHTLACLGKKVGMTSTGGIFI 519

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            D  +          A   LSS+ V    +E +  G+ +  L       G  TN+  DH+
Sbjct: 520 GDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLADVGVITNIAEDHL 579

Query: 218 --DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-----------NAG 264
             D   T +    AK  + E + P    +++ ADD + +  M+RA            N  
Sbjct: 580 GIDGMNTLEDLAFAKSLVVEAVKP-GGYSVLNADDKFVRYFMERAKGEIILFSKNNSNPV 638

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +             K    I+N +   + +  K+    +    E  + N+L AA     
Sbjct: 639 VKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLAAASALYG 698

Query: 325 IGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + +    + + L   +      PGRF  V       ++ +DY H       ++K +  I 
Sbjct: 699 LNLSIEAIRKGLATFNPDMESNPGRFNIVDMGD--FKVMLDYGHNPAGYLEVMKFLDKID 756

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-----AEIIH 434
           + R++ V G  GDRD       G+I         + +D + R  +P ++      A I  
Sbjct: 757 AKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGEVAGILYDAVISS 816

Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           G        I   +R  A+  A+      D +V             N E+   V   + R
Sbjct: 817 GTKKENVEIIYSEDR--ALEKALLDAQPGDFVV---------MFYENFERAAEVVERVRR 865

Query: 491 EIL 493
           E+L
Sbjct: 866 ELL 868


>gi|206561798|ref|YP_002232563.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           J2315]
 gi|229486475|sp|B4E6J1|MURC_BURCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198037840|emb|CAR53784.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           J2315]
          Length = 465

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 141/429 (32%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            EG+     +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSEDPEKI---------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             D  ++T+     E    I         RA    G    +      +      ++    
Sbjct: 382 TVDALVLTEVYAAGE--AAIPTASGDALSRALRAAGKVDPVFVATVDDVPDALAKVARNG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|316941823|gb|ADU75857.1| cyanophycin synthetase [Clostridium thermocellum DSM 1313]
          Length = 882

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 150/423 (35%), Gaps = 41/423 (9%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           TR   +     L+ +   + + +   +G +   +  + I         ++G TST   F 
Sbjct: 460 TRNVAADILDMLFPEASPHSIPIVSVTGTNGKTTTTRLIGHTLACLGKKVGMTSTGGIFI 519

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            D  +          A   LSS+ V    +E +  G+ +  L       G  TN+  DH+
Sbjct: 520 GDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLADVGVITNIAEDHL 579

Query: 218 --DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-----------NAG 264
             D   T +    AK  + E + P    +++ ADD + +  M+RA            N  
Sbjct: 580 GIDGMNTLEDLAFAKSLVVEAVKP-GGYSVLNADDKFVRYFMERAKGEIILFSKNNSNPV 638

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +             K    I+N +   + +  K+    +    E  + N+L AA     
Sbjct: 639 VKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLAAASALYG 698

Query: 325 IGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + +    + + L   +      PGRF  V       ++ +DY H       ++K +  I 
Sbjct: 699 LNLSIEAIRKGLATFNPDMESNPGRFNIVDMGD--FKVMLDYGHNPAGYLEVMKFLDKID 756

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-----AEIIH 434
           + R++ V G  GDRD       G+I         + +D + R  +P ++      A I  
Sbjct: 757 AKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGEVAGILYDAVISS 816

Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           G        I   +R  A+  A+      D +V             N E+   V   + R
Sbjct: 817 GTKKENVEIIYSEDR--ALEKALLDAQPGDFVV---------MFYENFERAAEVVERVRR 865

Query: 491 EIL 493
           E+L
Sbjct: 866 ELL 868


>gi|329115578|ref|ZP_08244300.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
 gi|326695006|gb|EGE46725.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
          Length = 498

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 141/421 (33%), Gaps = 57/421 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+S+A    +          I VV        L   R         +AV GT GK+
Sbjct: 89  AQVVVISTAVKRDNPEVVAARAKLIPVVRRAEMLAELMRLRWS-------VAVGGTHGKT 141

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + + + L    I     I ++  + R+     +                  V
Sbjct: 142 TTTSLVAAVLEAAKLDPTVING-GIIEAYGTNTRMGKGDWM-----------------VV 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RL  +       TN+  +H+D+  + +A   A    F   +P    A++ 
Sbjct: 184 EADESDGSFLRLPSV---ISVVTNMDPEHLDHWGSPEA-MEAAYDQFVSNVPFYGFAVLC 239

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------KDF 300
            D    ++++ R  +          Q   +  +K+          +++         K  
Sbjct: 240 IDHPAVQQMIPRLSDHRIVTYGFSPQAD-VRAEKLITDKLGATFEVTLTDRVSRHTRKAG 298

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G   V NAL A  +   + I   ++   L     V  RF   G    G  +  
Sbjct: 299 PFRLPMLGSHNVQNALAAIAVATEMDISDDVIRSGLASFRGVKRRFTRTGEAG-GITVID 357

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +  +LK  R   +  +I V                   ++ AD  IV+D   
Sbjct: 358 DYGHHPVEIAAVLKAARQAGANHVIAVMQPHRYSRLKILFSDFCACMNDADTVIVSDVYA 417

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNR-----------IEAIRTAIEMLNKQDVLVVAGK 467
             ED  P+  R ++I G+    E+G+R            E I     +    D +V  G 
Sbjct: 418 AGEDPLPDASRDKLIEGLR---ERGHRSVVPLSSPDHLAEMIN---AIAKPGDYVVCLGA 471

Query: 468 G 468
           G
Sbjct: 472 G 472


>gi|170731884|ref|YP_001763831.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           MC0-3]
 gi|229486474|sp|B1JV79|MURC_BURCC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169815126|gb|ACA89709.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 141/430 (32%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +       +  + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--T 351
            EG+     +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNK 458
             D  ++T+     E   P      +   +               +  +A+         
Sbjct: 382 TVDALVLTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKV---AQN 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|89095258|ref|ZP_01168179.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
 gi|89080465|gb|EAR59716.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
          Length = 482

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 131/410 (31%), Gaps = 45/410 (10%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S+A + ++          I +V    + L+      +G      +AV GT GK++  S +
Sbjct: 84  STAVNEENPEVKAAREKRIPIVRRA-EMLAELMRYRHG------IAVAGTHGKTTTTSLL 136

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I         ++ PT  I                    ++       + +        
Sbjct: 137 ASIFAE-----GELDPTFVIGGRLNSAGTNAKMGTSRY-LVAEADESDASFL-------- 182

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   ++ +    TN+  DH++ ++   +        F   LP    A++  DD   
Sbjct: 183 -------HLQPMVAIVTNIDADHMETYENDFSRLKKTFVEFLHNLPFYGLAVMCVDDPVV 235

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEF 310
            E++         VL+ G  +      + +       + T+       D D    +PG  
Sbjct: 236 CEILPEISRP---VLTYGVSEDADYRAENIRQEGMCTRFTVKRPEGFADLDVSLNMPGHH 292

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSN 367
            + NAL    +    GI    +   LEK   V  RF+ +G          +  DY H   
Sbjct: 293 NMLNALATIAVASDEGISDEAICSALEKFEGVGRRFQVLGDVSVTDGTAMLVDDYGHHPR 352

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +  ++K IR      R+++++                  L   D+ ++ +     E+P 
Sbjct: 353 EVNAVVKAIREGWPEKRLVMIYQPHRYSRTRDLYEDFVEVLSEVDVLLLLEVYAAGEEPV 412

Query: 427 K------IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  +   I   G    +   ++        ++L   D+L+  G G 
Sbjct: 413 AGADSRSLCRSIRQRGRLDPVFVSDKDSVADVLKDILQPGDLLLTQGAGD 462


>gi|296125247|ref|YP_003632499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
 gi|296017063|gb|ADG70300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
          Length = 451

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 163/472 (34%), Gaps = 55/472 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKIN---EVSSDSRHIQAGW------IFVAIVGNK 53
           L+++I K   EL ++   +     E  I+   E+S+DSR            +F+AI G+K
Sbjct: 6   LKNII-KVSKELNSK---YSKNIEELDIDKELEISTDSR-----DSFDSTKLFLAIKGDK 56

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            DG+ F  +   +G    ++S      D +  +  N  +   D+T  F    A     + 
Sbjct: 57  FDGNKFALETYNKGCRYFILS------DQTINMPDNAKVFYTDDTILFFIKLAREYRRRF 110

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I++VTG+ GK++                 +     T  +F         + I + K 
Sbjct: 111 NIPIISVTGSCGKTTTKELTHLFLST------KYKALKTEGNF--------NNEIGVPKT 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +  L +     V     +H  +  R+   I+       N+   HI +  + +    AK  
Sbjct: 157 MFNLDTSYEIAVIEAGMNHKNELLRISECIEANTVIINNVEPVHIAHLGSIENIAYAKAE 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF     + + A+I  +   +  + K A     + +             +  I  K   +
Sbjct: 217 LFNH-TKENANAVINKNTNCADILKKEAKRNNIKNI---------IEADIKEIVKKDDNS 266

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +G    F   L G+F +YN L A        ID     + L        R + +   
Sbjct: 267 FEYKG--IIFNHNLVGDFNLYNVLSALKAAEIYNIDLKKCADILLNYQSQKNRMQIINIK 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I   Y     +L+ +LK +      + I V G   + +        +I  ++ ++
Sbjct: 325 GCNI-INDCYNSNPAALKNMLKYLSQRNESKKIAVIGDMLETETENSSYHKEIGNNINEL 383

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +       E  + I   I++    + E      AI    + L     +++
Sbjct: 384 KNIDTVIAVGEHSKDIYN-IVNCEKYYFENAQ--SAIEKVKDFLKDNTAMLI 432


>gi|212635043|ref|YP_002311568.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella piezotolerans
           WP3]
 gi|226711874|sp|B8CNL2|MURC_SHEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212556527|gb|ACJ28981.1| UDP-N-acetylmuramate-alanine ligase [Shewanella piezotolerans WP3]
          Length = 489

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 139/410 (33%), Gaps = 46/410 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S+A S  +          I VV    + L+      +G      +AV GT GK++  S +
Sbjct: 87  STAISADNPELMAAKELRIPVVQRA-EMLAELMRYRHG------VAVAGTHGKTTTTSLI 139

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +  ++        PT  I                    ++       + +        
Sbjct: 140 ASVYGQADRD-----PTFVIGGLLNSAGTNARLGHSRY-LIAEADESDASFL-------- 185

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   ++ +    TN+  DH+D +             F   LP    A++  DD   
Sbjct: 186 -------HLQPMVSVVTNIEADHMDTYGGDIEKLKNTFVDFIHNLPFYGVAVVCIDDPIV 238

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQ 311
           +E++ R      +V++ G+     +            Q T+   G  D +    LPGE  
Sbjct: 239 RELLPRFSR---KVVTYGFGDDADVQAVGFTQTGYSSQFTVRRSGVADLNLSVNLPGEHN 295

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNS 368
           V NAL A  +     I+   +++ L +   +  RF+ VG   T     ++  DY H  + 
Sbjct: 296 VLNALAAIAVASEDDIEDEAIIKALAEFQGIGRRFQQVGDFETAKGEVKLVDDYGHHPSE 355

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---- 423
           +   +K  R      R+++++                  L   D  ++ D     E    
Sbjct: 356 VAATIKAARQGWPERRLVMIYQPHRYSRTRDLYEDFVEVLSQVDCLLLLDVYAAGEAAIP 415

Query: 424 --DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
             D   +   I + G    +   +  E ++T + E+L   D+L+  G G+
Sbjct: 416 GADSRALCRSIRVRGQLEPVFVAS-TEQLQTVLPEILQNGDLLLTQGAGN 464


>gi|206889487|ref|YP_002249134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741425|gb|ACI20482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 482

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 180/458 (39%), Gaps = 59/458 (12%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPIL-VVDNTRKFLSLF 105
           I+G    GH   P+A+   A+ +VVS    L      + +    P++  ++ + + LSL 
Sbjct: 64  IIGE---GHP--PEALEN-ADIVVVSPGVPLSTPSIVSAVYKGIPVIGEIELSWQILSLI 117

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
              +       I+ +TG +GKS+ ++   +  +R G      G                P
Sbjct: 118 KENV------KIIGITGANGKSTTSTLTYEFLKRDGKKVQLAGNIG------------YP 159

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               + K L+      + ++ +E SS  L+   +   K    +  N+  DH+D +   + 
Sbjct: 160 MAEVVLKLLNK--EIDMEYLVLELSSFQLE--GIKTFKPDFAAILNITPDHMDRYSDMKE 215

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR------VLSVGY-QGKFIH 278
           Y  AK ++F+     +   I+  DD  +   ++   N   +      V      Q  +  
Sbjct: 216 YIEAKAKIFQNQ-NGDDYLILNMDDENTISAIEYLRNVYLKKGKLPHVFYFSRVQNVYGA 274

Query: 279 LKKVCAIHNKQQVTISVEGKDFD-------FLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
             K  +I+   +  +S + K            F + G   V N + A+ L +  G     
Sbjct: 275 YLKNDSIYFNAREEVSDDIKKEMENTVLSVSTFKIKGIHNVENIMAASLLALCSGCKGQS 334

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + +++   +P R E V      G IY++ +  +N ++ + K++ +      +++   G
Sbjct: 335 IKDVVQQFPGLPHRMEPV--REIDGVIYINDSKGTN-VDAVKKSLESFPGN--VILIAGG 389

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
            D+D     +   +   +  + ++       E   KI   +   +P ++E  +   A+  
Sbjct: 390 RDKDGDFSALKSIVKEKVKALLLI------GEAKHKIADALGDLVPCYLE-SDMKSAVIK 442

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           A E+    DV++++  G  +  +  N E +  V  DI+
Sbjct: 443 AKEIARAGDVVLLS-PGCASFDMFKNFEHRGEVFKDIV 479


>gi|150397282|ref|YP_001327749.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium medicae
           WSM419]
 gi|166224733|sp|A6UB84|MURC_SINMW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150028797|gb|ABR60914.1| UDP-N-acetylmuramate--alanine ligase [Sinorhizobium medicae WSM419]
          Length = 471

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 137/420 (32%), Gaps = 47/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IVVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVIVVSTAIKKDNPELIAAREKFLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVAALLDAGGLDPTVING-GIINAYGTNARMGAGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++ +  A  +A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGSFDAVRSA-FRQFVENVPFYGFGVLC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ +  +   +V++ G      +    +          I +  +        
Sbjct: 218 LDHPEVQSMVGKIEDR--KVVTYGENPQADVRFHNIRMDGATSIFDIEIRRRRTGQVIEI 275

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D   P+PG   V NA  A  +   +GI    +   +     V  RF   G    G RI+
Sbjct: 276 KDLRLPMPGRHNVSNATAAVAVAQRLGIKPEDIARGIASFGGVKRRFTLTG-EWNGARIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L+  R    GRI+ V                    + AD  ++    
Sbjct: 335 DDYGHHPVEIKAVLRAAREACQGRIVAVHQPHRYSRLSSLFEDFTSCFNDADTILLAPVY 394

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGHETV 472
              E+       E +   I           +  EA+   +  +    D +V+ G G  T 
Sbjct: 395 SAGEEAIDGVNSEALVNRIKAAGHRDARHISGQEALAPVVAKIAQPGDFVVLLGAGSITY 454


>gi|282902044|ref|ZP_06309942.1| UDP-N-acetylmuramate--alanine ligase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193131|gb|EFA68130.1| UDP-N-acetylmuramate--alanine ligase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 489

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 134/410 (32%), Gaps = 50/410 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +    A +    PIL   +    L   A           +AV GT GK++
Sbjct: 99  VICSTAINNNNLEYRAALELGCPILHRSDVLAAL--IADYHS-------IAVAGTHGKTT 149

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL                D  +     +   +  + L          +
Sbjct: 150 TSSMIGYMLLEAGL----------------DPTIVVGGEVNAWEGNARLGESKYLVAEAD 193

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++ T +         F+         +   
Sbjct: 194 ESDGSLVKH-----TPAIGIITNIELDHPDHYATLEQVVET----FQTFARGCQVVVGSI 244

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLP 307
           D    ++ +K   +          QG    +  +    +     +  +GK    L   L 
Sbjct: 245 DCDIVRDRLKPGISYSLDP----DQGADYTVTNIDYRPDGTTALVWEKGKSLGVLNLQLL 300

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  +  ++ ++   + + L        RFEF G    G     DYAH  +
Sbjct: 301 GLHNLSNALAAVAVGRSLNLEFGQIAKGLTTFEGARRRFEFKG-EVDGITFIDDYAHHPS 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP 425
            +   L   R        VV      R    R  + + A     AD+ ++TD     E  
Sbjct: 360 EIRATLAAARLQAKPGQRVVGIFQPHRYSRVRTFLDEFANCFTHADLVVLTDIYSAGEPS 419

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 EK+ AEI    P  I + +        +  L   D+ V  G G+
Sbjct: 420 CEQVTGEKLAAEIAKRHPQVIYQPSLALIPPVLLSTLRPGDLAVFLGAGN 469


>gi|254562107|ref|YP_003069202.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
 gi|254269385|emb|CAX25351.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
          Length = 468

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 146/428 (34%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + +   A  +VVS+A    +          + VV        L   +       
Sbjct: 58  GHR--AENVEN-AALVVVSTAIRRDNPELIEARERRLPVVRRAEMLAELMRFKSC----- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +   +G     +     I+++  + R+     + +    S
Sbjct: 110 --VAVAGTHGKTTTTSLVATLLD-AGNLDPTVINGGIINAYGTNARMGAGDWMVVEADES 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  +H+D+  + +A  +A  R F 
Sbjct: 167 D--------------------GTFLKLPADVAIVTNIDPEHLDHFGSFEAIKDA-FRRFI 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + +P    A++  D    ++++    +   R+++ G      + L  +     + +  + 
Sbjct: 206 DNIPFYGFAVMCIDHPIVQDLVGHIEDR--RIITYGENPQADVRLIDIDLKGGQSRFRVM 263

Query: 295 VEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +         D + P+PG     NA  A  +   +G+ S  + + L     V  RF 
Sbjct: 264 IRDRRPGFRMEIEDLVLPMPGRHNALNATAALAVAHELGVPSDAIRKALAGFGGVKRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G    G  I+ DY H    ++ +L+  R  T GR+I +                    
Sbjct: 324 RTGEW-NGATIFDDYGHHPVEIQAVLRAARASTDGRVIAIVQPHRYTRLQSLFEDFCTCF 382

Query: 408 DLADIAIVTDDNPRSEDP-EKI-RAEIIHGIPGFIEKG----NRIEAIRTAIE-MLNKQD 460
           + AD  IV       E P E I R  +I G+     +      R E +   +       D
Sbjct: 383 NDADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRDAVALERPEDLARLVAGRAGSND 442

Query: 461 VLVVAGKG 468
            +V  G G
Sbjct: 443 YVVCLGAG 450


>gi|329901113|ref|ZP_08272729.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549212|gb|EGF33800.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 471

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/435 (18%), Positives = 139/435 (31%), Gaps = 59/435 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+AIV S+A    +          I +V      L+       G    
Sbjct: 56  GH---AAAYIDGADAIVTSTAVKEDNPEVVAGRERHIPIVPRALM-LAELMRLKRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +  + G   +F IG   T +                    
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAQGGLDPTFVIGGRLTSAG------------------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              ++  +       +           +  +    TN+  DH++ ++            F
Sbjct: 147 ---ANAKLGAGDFIVAEADESDASFLNLSPVIEVITNIDADHMETYEHDFNKLKQAFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              LP    A++  DD + +E+M R       +++ G+ +   +      A+    Q T+
Sbjct: 204 TLRLPFYGIAVLCLDDVHVREIMPRIAKP---IMTYGFHEEADVRAIDARAVGGLMQFTV 260

Query: 294 SVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G          PG   V NA  A  +   + +      + L + + V  RF   G  
Sbjct: 261 IQDGYPPLPISLNQPGMHNVQNACAAIAIARELSVADCDTQKALAEFNGVGRRFTRYGEI 320

Query: 353 SRGGR---------IYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIM 402
           +  GR         +  DY H        L   R    GR +V+ F              
Sbjct: 321 AFAGRDGKPGGTFALVDDYGHHPVETAATLSAARGAYPGRRLVLAFQPHRYTRTRDLFED 380

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAI 453
               L   D  ++ +     E P  I A     +   +    ++E +          T +
Sbjct: 381 FVKVLSSTDALVLAEVYAAGEQP--IVAADGRALAHALRVAGKVEPVFVEVIADMPETIM 438

Query: 454 EMLNKQDVLVVAGKG 468
            ML   DV++  G G
Sbjct: 439 NMLRDGDVVITMGAG 453


>gi|190892582|ref|YP_001979124.1| UDP-N-acetylmuramate--alanine ligase [Rhizobium etli CIAT 652]
 gi|190697861|gb|ACE91946.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 471

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 141/416 (33%), Gaps = 47/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLEAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ R  +   ++++ G      +  K V     +    + +  +        
Sbjct: 218 LDHPEVQSLVGRIEDR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTEL 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+
Sbjct: 276 KGLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L+  R    GRII V                    + AD   +    
Sbjct: 335 DDYGHHPVEIKAVLRAAREACKGRIIAVHQPHRYSRLASLFEEFAACFNDADSIFLAPVY 394

Query: 420 PRSEDPEK------IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
              ED  +      + + I  G        +  E + +   E+    D +V+ G G
Sbjct: 395 AAGEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|118590891|ref|ZP_01548291.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
 gi|118436413|gb|EAV43054.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
          Length = 466

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 147/420 (35%), Gaps = 53/420 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVSSA    +          I VV        L          +  +AV GT GK+
Sbjct: 67  AEVLVVSSAIKKDNPELVAAREKLIPVVRRAEMLAELMRF-------KQAIAVGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVAALLDAGGLDPTVING-GIINAYGTNARMGEGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++        A  R F E +P    A++ 
Sbjct: 168 ---------GTFVKLPADVAIVTNIDPEHLDHYGDFAGVRAA-FRQFVENVPFYGFAVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD------- 299
            D    + ++    +   RV++ G      +    V     K   ++++  +        
Sbjct: 218 LDHPEVQTMIGTIEDR--RVVTYGANPQADVRYTDVSMDGGKSMFSVTLRDRRSGQVIEL 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P+PG   V NA  A  +   +G+ +  + + +     V  RF   GT   G +++
Sbjct: 276 NNLTLPMPGLHNVSNATAAIAVASQLGVGADELRKGIAAFGGVKRRFTHTGTVG-GVQVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L   R  T G++I V                    + AD  I+    
Sbjct: 335 DDYGHHPVEIKAVLHAARESTKGKVIAVMQPHRYTRLHSLFDDFSNCFNDADAVIIAPVY 394

Query: 420 PRSEDPEKIRA--EIIHGIPGFIEKGNR-IEAIR------TAI-EMLNKQDVLVVAGKGH 469
              E P +  A  +++ G+     +G+R ++AI         I ++    D +V  G G+
Sbjct: 395 AAGEQPIEGAAHTDLVSGMK---TRGHRNVQAIEGPEDLPALIKDLAEPGDFVVCLGAGN 451


>gi|302335880|ref|YP_003801087.1| UDP-N-acetylmuramate--L-alanine ligase [Olsenella uli DSM 7084]
 gi|301319720|gb|ADK68207.1| UDP-N-acetylmuramate--L-alanine ligase [Olsenella uli DSM 7084]
          Length = 473

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/414 (20%), Positives = 141/414 (34%), Gaps = 45/414 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V+SSA    +          I V     K LS  +S          +AV GT GK++ 
Sbjct: 73  VVVISSAIPETNPEVIRARELGIPVWPRA-KMLSYLSS------DATTIAVAGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S V  +    G+    +     I    ++      +            S G        
Sbjct: 126 SSMVATMIDHLGMDPSFL-----IGGIVEEYGTNGRNGRGGYFVCEADESDGSFLY---- 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       +       TN+  DH+D++ T +       + F +L+      +I  D
Sbjct: 177 ------------LNPDVVVVTNIEEDHLDHYGTLKNIERTFCQ-FMDLVGDAGTIVINGD 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPL 306
             +  E+   A + G RV+S G+ G   ++      H++   + SVE   G     +   
Sbjct: 224 VPHYVEL---ARSTGRRVVSYGFDGACDYVCIPEDSHHRLASSFSVETPSGDSVRVVIKS 280

Query: 307 -PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            PG   + NA  A  +  A+G D     + L        RF  VG       +  DY H 
Sbjct: 281 NPGRHNMANATAAIAVADALGCDLPRAADALSAFQGAHRRFTHVGDVDGVTVV-DDYGHH 339

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +   L   R +   RI+ VF                 A D AD+ +VT+  P  E P
Sbjct: 340 PTEIRATLAAARDLDFKRIVCVFQPHRYSRTQSLQDQFAHAFDNADVLVVTEIFPAGETP 399

Query: 426 ------EKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 + +   +    G+       NR + +R   ++    D+L+  G G  T
Sbjct: 400 IPGVTGKTVSGGVAQAGGVDDVSFIANRKDLVRHLCDVCRPGDLLITQGAGDVT 453


>gi|300702963|ref|YP_003744565.1| UDP-N-acetylmuramate--l-alanine ligase [Ralstonia solanacearum
           CFBP2957]
 gi|299070626|emb|CBJ41921.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CFBP2957]
          Length = 483

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 142/424 (33%), Gaps = 56/424 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL    +     ++S   + RL T         ++       + ++
Sbjct: 117 TTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIVAEADESDASFLN 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A        F   LP    A++
Sbjct: 171 ---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-----SVEGKDF 300
             DD   +E++         V+  G+            A+  + + T+            
Sbjct: 216 CVDDPNVREILPFVSKP---VVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG- 355
                LPG   V NAL A  +   + +    +++ L + + V  RF+  G     + +G 
Sbjct: 273 SITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGR 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAI 414
             +  DY H    +   +   R    GR +V+        + +      I  L   D  +
Sbjct: 333 FTLIDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFIKVLGTVDGLL 392

Query: 415 VTDDNPRSEDP-------EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
           + +     E P          RA  + G   P F+E   +  +AI  A       DV++ 
Sbjct: 393 LAEVYSAGEPPIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDA---AQDNDVVIT 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|187930156|ref|YP_001900643.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12J]
 gi|229620425|sp|B2UCX6|MURC_RALPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187727046|gb|ACD28211.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12J]
          Length = 483

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 141/425 (33%), Gaps = 58/425 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL    +     ++S   + RL T         ++       + ++
Sbjct: 117 TTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIVAEADESDASFLN 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A        F + LP    A++
Sbjct: 171 ---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-----SVEGKDF 300
             DD   +E++         V+  G+            A+  + + T+            
Sbjct: 216 CVDDPNVREILPFVSKP---VVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG- 355
                LPG   V NAL A  +   + +    +++ L + + V  RF+  G     + +G 
Sbjct: 273 SITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGH 332

Query: 356 GRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DY H    +   +          R+++ F                  L   D  +
Sbjct: 333 FTLIDDYGHHPVEMAATLAAARGAFPDRRLVLSFQPHRFTRTRDCFEDFVKVLGTVDALL 392

Query: 415 VTDDNPRSEDPEKIRAE---------IIHGI-PGFIE-KGNRIEAIRTAIEMLNKQDVLV 463
           + +     E P  I A+         + + I P F+E   +  +AI  A       DV++
Sbjct: 393 LAEVYAAGEPP-IIAADGRALTRALRVANKIEPVFVEQIEDMPQAILDA---AQDGDVVI 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 TMGAG 453


>gi|225619677|ref|YP_002720934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225214496|gb|ACN83230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 450

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/396 (17%), Positives = 128/396 (32%), Gaps = 52/396 (13%)

Query: 32  EVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           E+S+DSR       +F+AI G K DG+ F  +   +G    ++S      D S  +  + 
Sbjct: 34  EISTDSRDNFDENKLFLAIKGEKFDGNKFALETYNKGCRYFILS------DASIKLPDDA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGLS 143
            +   D+T  F    A     +    ++++TG+ GK++             +  +  G  
Sbjct: 88  VVFYADDTILFFIKLAREYRRRFNIPVISITGSCGKTTTKELTHLFLSTKYKALKTEGNL 147

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           + +IG   TI +      +                           +         + I+
Sbjct: 148 NNEIGVPKTIFNLDDSYEIAVIEA--------------------GMNHENELLRISEAIE 187

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+   HI Y  + +    AK  LF     + + A+I  +      + K A   
Sbjct: 188 ANTVIINNVEPVHIAYLGSIENIAYAKSELFNH-TRENANAVINKNTNCIDILEKEASRN 246

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             + +             +  I  K   T    G    F   L G+F ++N L A     
Sbjct: 247 NIKNI---------IEADIKEIIKKDDNTFEYNG--ITFKHNLIGDFNLHNVLSALKAAE 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +D     + L        R + +        I   Y     +L+ ++K +   +  +
Sbjct: 296 LYDVDLQKCADILITYESQKNRMQIINIKGCN-VINDCYNSNPAALKNMIKFLSQRSESK 354

Query: 384 IIVVFGCGGDRDQ---GKRPIMGKIA--LDLADIAI 414
            I V G   + +         +GKI   L   D  I
Sbjct: 355 KIAVIGDMLETETENSSYHKDIGKIINELKNIDTVI 390


>gi|295104114|emb|CBL01658.1| UDP-N-acetylmuramate--L-alanine ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 461

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 130/407 (31%), Gaps = 36/407 (8%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S+A S  +      ++  I  V+ +             +  +  + V+GT GK
Sbjct: 74  GADMVVYSAAISKDNVELNAAASYGIPTVERSVLL------GYVSRLYKQSICVSGTHGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +    + +G       P++ I            +                  + 
Sbjct: 128 TTTTSMITTALELAGRD-----PSAVIGGKLPLINGYGKAGKG-------------DDIV 169

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EA            +        N+  DH+DY+ +       K       L  +     
Sbjct: 170 IEACEFAE---TFLKLTPYLSVVLNIDNDHLDYYGSMGEL---KFAFKRFALMTQFMIFA 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLF 304
            ADD  + +VM    +   R  ++   G +  +          +  +             
Sbjct: 224 NADDKNTMDVM-YTLDRRVRTFAIDNHGDYRAVNINEYKPGFFEFDLKEWNTTDTTRIRL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   +YNAL    +C  +G+ +    E          RFE  G    G  +  DYAH
Sbjct: 283 SVPGRHNIYNALAMCAVCRFVGLSAEQCAEAALNFKGAGRRFEVYG-ECNGALVIDDYAH 341

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
               L   L   + +   R+I V                   L + DI ++T      E 
Sbjct: 342 HPTELRATLNTAKEMGYKRLIAVHQPFTYSRTKMLFNDFVDVLKIPDITVLTPIMGSREP 401

Query: 424 -DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            DP    A++   IPG +   +  EA     +     D+++  G G 
Sbjct: 402 NDPTITSAKLAAQIPGSVLVNSLQEAADWVKQNAQPGDLVITLGCGD 448


>gi|163852359|ref|YP_001640402.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218531119|ref|YP_002421935.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240139696|ref|YP_002964173.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
 gi|229620038|sp|A9VWV4|MURC_METEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766010|sp|B7KSC2|MURC_METC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163663964|gb|ABY31331.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218523422|gb|ACK84007.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240009670|gb|ACS40896.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
          Length = 468

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 146/428 (34%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + +   A  +VVS+A    +          + VV        L   +       
Sbjct: 58  GHR--AENVEN-AALVVVSTAIRRDNPELIEARERRLPVVRRAEMLAELMRFKSC----- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +   +G     +     I+++  + R+     + +    S
Sbjct: 110 --VAVAGTHGKTTTTSLVATLLD-AGNLDPTVINGGIINAYGTNARMGAGDWMVVEADES 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  +H+D+  + +A  +A  R F 
Sbjct: 167 D--------------------GTFLKLPADVAIVTNIDPEHLDHFGSFEAIKDA-FRRFI 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + +P    A++  D    ++++    +   R+++ G      + L  +     + +  + 
Sbjct: 206 DNIPFYGFAVMCIDHPIVQDLVGHIEDR--RIITYGENPQADVRLIDIDLKGGQSRFRVM 263

Query: 295 VEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +         D + P+PG     NA  A  +   +G+ S  + + L     V  RF 
Sbjct: 264 IRDRRPGFRMEIEDLVLPMPGRHNALNATAALAVAHELGVPSDAIRKALAGFGGVKRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G    G  I+ DY H    ++ +L+  R  T GR+I +                    
Sbjct: 324 RTGEW-NGATIFDDYGHHPVEIQAVLRAARASTDGRVIAIVQPHRYTRLQSLFEDFCTCF 382

Query: 408 DLADIAIVTDDNPRSEDP-EKI-RAEIIHGIPGFIEKG----NRIEAIRTAIE-MLNKQD 460
           + AD  IV       E P E I R  +I G+     +      R E +   +       D
Sbjct: 383 NDADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRDAVALERPEDLARLVAGRAGSND 442

Query: 461 VLVVAGKG 468
            +V  G G
Sbjct: 443 YVVCLGAG 450


>gi|91786974|ref|YP_547926.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
 gi|122968125|sp|Q12EL4|MURC_POLSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91696199|gb|ABE43028.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
          Length = 467

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 154/432 (35%), Gaps = 56/432 (12%)

Query: 59  FIPQAIAQGAE--AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A +  A+  A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAASNLAKVDAVVTSTAVQADNPEVLAAREKRIPVVPRALM-LAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  +   +GL      PT  I                L  A + 
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAEAGLD-----PTFVIGGR-------------LNSAGAN 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  ++ VEA     D   L+ +  +    TN+  DH++ +    A        F  
Sbjct: 149 ARLGLGDYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFANLKKAFVDFLH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P    AI+  DD   +E++ +     C + S G+ G+   ++ V       Q+  + +
Sbjct: 206 RMPFYGTAILCTDDPAVREIVPQV---SCPITSYGF-GEDAQVRAVNVRPVGAQMHFTAQ 261

Query: 297 GK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +      D + +  L GE  V NAL A  + + + +    V + L +   V  RF+  G
Sbjct: 262 RRNGVTLPDLEVVLNLAGEHNVLNALSAIAVAVELNVPDTAVQKALAEFKGVGRRFQSYG 321

Query: 351 -TNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKI 405
              ++GG    +  DY H    +   L   R    GR +V+ F                 
Sbjct: 322 DVPAKGGGHFTVIEDYGHHPVEVAATLAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVK 381

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--------NRIEAIRTAI-EML 456
            +  AD  ++ +     E P  I A     +   +           + I+A+  AI +  
Sbjct: 382 VIGQADAVLLAEVYAAGETP--IVAADGRSLARALRVAGKLEPVFVSEIDAMPQAILDNA 439

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 440 LGGDVVMCMGAG 451


>gi|284008381|emb|CBA74789.1| UDP-N-acetylmuramate--L-alanine ligase [Arsenophonus nasoniae]
          Length = 515

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 153/439 (34%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLY 110
            Q I  GA+              +   S  I ++ P ++     +        + A  + 
Sbjct: 81  EQLIELGAKIYFNHRPENVANACVVVVSTAIAADNPEIIAAREARIPVIRRAEMLAELMR 140

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + +  I  ++GL    I      ++       T+      
Sbjct: 141 FRHG---IAIAGTHGKTTTTAMIASIYAQAGLDPTFINGGLVKAAGVHARLGTS------ 191

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH++ +          
Sbjct: 192 RYLIAEADESDASFL---------------HLQPLVAVITNIEADHMETYDGDFEKLKQT 236

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
              F   LP     ++  DD   + ++ +       + + G+     + +       N+ 
Sbjct: 237 FISFLHNLPFYGRVVLCIDDPVVRSLLPQIGR---YITTYGFSDDADVRITSYKQRGNQG 293

Query: 290 QVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T++ E + D  F+   PG     NA  A  +    GID + +L  L+K      RF+ 
Sbjct: 294 FFTVARENRADLAFILNAPGRHNALNATAAIAVATEEGIDDSAILTALKKFQGTGRRFDL 353

Query: 349 VG------TNSRGGRI--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G +    DY H    ++  +K  +    + RI++VF           
Sbjct: 354 LGNFPLADVNGKKGSVMLVDDYGHHPTEVDATIKAAKEGWPNKRIVMVFQPHRYTRTRDL 413

Query: 400 PIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
                  L+  D+ ++ D  P  E+  P      +   I       P FI + ++I    
Sbjct: 414 YDDFANILEQVDVLLMLDVYPAGEEPIPGADSRSLCRTIRNRGKLDPIFIAEHDQIG--E 471

Query: 451 TAIEMLNKQDVLVVAGKGH 469
           T  +++   D++++ G G+
Sbjct: 472 TLAKIIEDNDLILIQGAGN 490


>gi|83312948|ref|YP_423212.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetospirillum magneticum
           AMB-1]
 gi|109892710|sp|Q2W0H2|MURC_MAGMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|82947789|dbj|BAE52653.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 105/282 (37%), Gaps = 17/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   A   TN+  +H+D++ T +    A  R F E +P    A +  D    + ++ R  
Sbjct: 174 LPSTAVVVTNIDPEHMDHYGTVERLHEA-FRTFVENIPFYGFAAMCIDHPEVQALVARVP 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYN 314
           +         +Q   + ++K+       +  + +  +         D   P+ GE  V N
Sbjct: 233 DRKLVTYGFNHQA-LVRVEKLSMDITGARYDVVITDRVTGATRTIADIHLPMYGEHNVLN 291

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A  +   +G+ + +V   L     V  RF   G  ++G  +  DY H    +  +LK
Sbjct: 292 SLAAIAVANELGLPNDVVKTALGGFKGVKRRFTRTG-EAKGVTVIDDYGHHPVEIAAVLK 350

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--IRAEI 432
             R+   G +I V                    + AD+ IV D     E P +   +A +
Sbjct: 351 AARSACQGNVIAVVQPHRYSRLSSLFAEFCTCFNDADMVIVADVYAAGEKPMEGFDKAAL 410

Query: 433 IHGIPGFIEKGNRIEAIRTAIE-----MLNKQDVLVVAGKGH 469
           + G+     +     A   A+      +    D++V  G G+
Sbjct: 411 VKGLQEHGHRRVMALADSKALAPLVNSLAGPGDMVVCLGAGN 452


>gi|227503281|ref|ZP_03933330.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
 gi|227075784|gb|EEI13747.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
          Length = 487

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 156/427 (36%), Gaps = 60/427 (14%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +V S A   QD    + +   N P++   +    L          H + +LA  GT GK+
Sbjct: 76  VVTSFAAIPQDNPELVAARGNNIPLIRRSDLLAAL-------MEGHTQVLLA--GTHGKT 126

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S  S      Q +G   SF IG     +                        + G T  +
Sbjct: 127 STTSMAVSAMQHAGLDPSFAIGGQLNRAGTN---------------------AHGGTGEA 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
             A +   D   L          TN   DH+DY  +  AYF       + + P     ++
Sbjct: 166 FVAEADESDASLLRY-SPDIAVITNAEPDHLDYFHSADAYFKVFADFADLVTPDTGYLVV 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----------HLKKVCAIHNKQQVTISVE 296
            A+D ++ E+ ++A + G  V+  G   K              ++  A      V +S+ 
Sbjct: 225 CAEDEHAAEIGEQALSRGINVIGYGGAEKARTTSVPLAATLTAEETTAAGMACTVQLSLP 284

Query: 297 G--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNS 353
           G  +   +   +PG   V N++ A    +  G + + + E L     V  RFE+ G  + 
Sbjct: 285 GVEQSVSYQLQIPGHHMVLNSMAALIAGVLSGGEPSTIAEGLADFSGVRRRFEYRGSVDW 344

Query: 354 RGG--RIYVDYAHTSNS-----LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +GG  R++ DYAH              K       GR+I  F         +       A
Sbjct: 345 QGGSVRVFDDYAHHPTEVAAVLRAARAKVAAEGNGGRVIACFQPHLYSRTMEFDAEFAQA 404

Query: 407 LDLADIAIVTDDNPRSEDP-EKIRAEII-HGIPGFIE---KGNRIEAIRTAIEMLNKQDV 461
           L LAD A+V D     E P E I + II + +P  +E   + +   A +  + +    D+
Sbjct: 405 LALADAAVVLDIYGAREQPVEGITSRIITNKMPEEMEVIFEPDFSAAAKDVVSIAQPGDI 464

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 465 ILTIGAG 471


>gi|187735166|ref|YP_001877278.1| UDP-N-acetylmuramate/alanine ligase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425218|gb|ACD04497.1| UDP-N-acetylmuramate/alanine ligase [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 765

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 140/425 (32%), Gaps = 51/425 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTG 122
           A+A+   S   +  +S+ IR++ P L          +      A+ L GK     + V+G
Sbjct: 69  ADAV---SDAEIVIYSSAIRADNPALAAARKLNIPCMRRAECLAAILNGK---KGVVVSG 122

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++ ++    + +  G         + I     +      S         YL ++G 
Sbjct: 123 THGKTTTSALCAHLMRE-GRMRPCHYVGAEIPVLGTNAHWNEDS--------EYLVAEGD 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                  +                    N+  +H+D+++          RL  +      
Sbjct: 174 ESDGTLVNYI-----------PEHSIVLNIEPEHLDHYKDLDEIKAVFDRLCSQ---TRG 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--F 300
             I       +++V  +  N     +S G+         V     +   T+ ++GK+   
Sbjct: 220 KIIYCRAHPGAEDVCAKYPN----SVSYGWSDADYTATDVLERRGRTLFTV-LKGKEELG 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V N+L A  L   +G+D   V   L        RFE    +S   RI  
Sbjct: 275 RVELGIPGRHNVLNSLAAIALATELGVDFPAVTRGLASFAGAKRRFETKYLSS-SIRIVD 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +   L+  R++   R++V F                  L  AD+  V D  P
Sbjct: 334 DYGHHPTEIAATLQTARSLQPNRLVVYFQPHRYTRTQLLADDFGKVLQEADLVFVADVYP 393

Query: 421 RSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG--HET 471
            SE P      + I   +  HG        +   A  T    L   D+ +  G G  HE 
Sbjct: 394 ASELPIEGVSGQTIINAMHRHGPVETRYLPDLGIAHHTIGNALKPGDLFLTLGAGNVHEC 453

Query: 472 VHIVT 476
              + 
Sbjct: 454 GMRIA 458


>gi|317493278|ref|ZP_07951700.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918671|gb|EFV40008.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 500

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 126/419 (30%), Gaps = 47/419 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 136 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
                         ++ +    TN+  DH+D YH   +         F   LP    A++
Sbjct: 188 -------------HLQPMVAVVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVM 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   +E++ R                                    +          
Sbjct: 234 CIDDPVVRELLPRV-GRHITTYGFSEDADVRIESYQQNGAQGTFFICRQDKPRLAVTLNA 292

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRI 358
           PG     NA  A  +    GI    +L  LE       RF+F+G               +
Sbjct: 293 PGRHNALNAAAAVSVATEEGIADEDILRALEGFQGTGRRFDFLGEYALENVNGKEGKAML 352

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    ++  +K  R    + R++++F                  L   D+ ++ D
Sbjct: 353 VDDYGHHPTEVDATIKAARAGWPNRRLVMIFQPHRFTRTRDLYDDFANVLSQVDVLLMLD 412

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E P        +   I   G    +   +      T  + L   D+++  G G+
Sbjct: 413 VYSAGETPIPGADSRSLCRTIRGRGKLDPVLVSDAATLPATLAQFLQNDDLILTQGAGN 471


>gi|17547562|ref|NP_520964.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           GMI1000]
 gi|25008811|sp|Q8XVI8|MURC_RALSO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17429866|emb|CAD16550.1| probable udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 483

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 142/424 (33%), Gaps = 56/424 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL    +     ++S   + RL T         ++       + ++
Sbjct: 117 TTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIVAEADESDASFLN 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A        F   LP    A++
Sbjct: 171 ---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-----SVEGKDF 300
             DD   +E++         V+  G+            A+  + + T+            
Sbjct: 216 CVDDPNVREILPFVSKP---VVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG- 355
                LPG   V NAL A  +   + +    +++ L + + V  RF+  G     + +G 
Sbjct: 273 SITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGR 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAI 414
             +  DY H    +   L   R    GR +V+        + +      I  L   D  +
Sbjct: 333 FTLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFIKVLGTVDALL 392

Query: 415 VTDDNPRSEDP-------EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
           + +     E P          RA  + G   P F+E   +  +AI  A       DV++ 
Sbjct: 393 LAEVYAAGEPPIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDA---AQDNDVVIT 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|225549111|ref|ZP_03770086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
 gi|225370337|gb|EEG99775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
          Length = 463

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 142/414 (34%), Gaps = 35/414 (8%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +    S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFMALKNMILDLN 364

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
              +  +V         G    +G++A       I+   +   +    I  E +
Sbjct: 365 IQNKKFIVL--------GSFKELGELAYKTHKDLILEAISMNFDKIFLIGEEFL 410


>gi|289209360|ref|YP_003461426.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. K90mix]
 gi|288944991|gb|ADC72690.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. K90mix]
          Length = 478

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 134/414 (32%), Gaps = 43/414 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVSSA    +          I +V    + L+      YG      +AV GT GK+
Sbjct: 74  ADVLVVSSAIDPSNPEVQAARRRGIPIVRRA-EMLAELMRFRYG------IAVAGTHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G+      PT  I          +         ++       + +  
Sbjct: 127 TTTSLVASVLAEAGMD-----PTFVIGGRLNSTASHSNLGAG-DYLVAEADESDASFL-- 178

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+  +        A    F   LP    A++ 
Sbjct: 179 -------------HLQPMISIVTNIDADHLGTYGNDFGNLRATFLEFLHHLPFYGIAVLC 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
           ADD   +++           L+ G +    +    V     +    + + G+  F     
Sbjct: 226 ADDPQVRDLYPELERPR---LTYGIEAQADVRALNVRQEGVRMFFDLKLPGQAAFPVTLN 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYA 363
           LPG   V NAL AA +   + +    +   LE+   +  RF+     +  G   +  DY 
Sbjct: 283 LPGRHNVLNALAAAAVAHELEVAPEAIQAALERFQGIGRRFQVQELETAQGPLTLVDDYG 342

Query: 364 HTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +E      R      R I VF                 AL   D+ I+ +  P  
Sbjct: 343 HHPREIEATQAAARDAWPDRRRITVFQPHRYTRTRDLFEDFAEALSETDVLILLEVYPAG 402

Query: 423 EDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E+P        +   I + G    +   +  +       ML   DV++  G G 
Sbjct: 403 EEPIPSADGRSLARAIRLRGQVEPVFVEHAADVAEVLSGMLKPNDVVITQGAGD 456


>gi|220906333|ref|YP_002481644.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 7425]
 gi|254765995|sp|B8HWY0|MURC_CYAP4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219862944|gb|ACL43283.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7425]
          Length = 482

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 134/423 (31%), Gaps = 54/423 (12%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A      ++   +    PIL   +    L         ++    +AV GT GK++
Sbjct: 75  VVCSTAIHADNPEYKMAVELGCPILHRSDLLAAL-------IERYQS--IAVAGTHGKTT 125

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  + G     + PT  I    Q          +   A + +    V      
Sbjct: 126 TSSMIGYLLLQGG-----VDPTIIIGGEVQ---------AWEGNARTGMGEYLVAEADES 171

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S       L       G  TN+  DH D++   +       ++FE         +   
Sbjct: 172 DGS-------LAKFAPQIGVITNIELDHPDHYSNLEQVI----KIFETFANHCQTVVACW 220

Query: 249 DDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           D    ++ +    +      S     G    + ++          +   G+   +    L
Sbjct: 221 DCPTIRDRLTVLPDQSVVSYSLFRESGADYSVDQISYGPQGTLAQVWERGELLGELSTKL 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NAL A  +   +G+D   +   + +      RFE  G  + G R   DYAH  
Sbjct: 281 LGAHNLKNALAAVAVGRLLGLDFITISRGIARFEGARRRFEVRG-EAHGIRFVDDYAHHP 339

Query: 367 NSLEMILKNIRTI---------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +   L   R              R++ VF                 A   AD+ ++TD
Sbjct: 340 SEIRATLAAGRLQLKSREEFISPWQRLVAVFQPHRYTRTFTFLTEFSQAFGDADLVVLTD 399

Query: 418 DNPRSEDPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
                E    ++ +     +         + +  E      + L   D+++V G G+   
Sbjct: 400 IYSAGERDRLVQGQHLADCMAEYHAQVQYQPSLEEVKLFLKQTLRPGDLVLVLGAGN-LN 458

Query: 473 HIV 475
            I+
Sbjct: 459 QII 461


>gi|226321622|ref|ZP_03797148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
 gi|226232811|gb|EEH31564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
          Length = 463

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 138/400 (34%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +    S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFIALKNMILDLN 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
              +  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQNKKFIVLGAFKELGELAYKTHKDLIQEAISMNFDKIFL 404


>gi|308177858|ref|YP_003917264.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
 gi|307745321|emb|CBT76293.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
          Length = 465

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 157/424 (37%), Gaps = 41/424 (9%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFAS----RLYGKHPE 115
            +GA   V   A +L D      S+ I+   P    +  R+ L +           +  E
Sbjct: 55  ERGARIHVGYDAANLGDADTVVISSIIKPGNPE-YDEAVRRGLRILHRSEGLEATMRGHE 113

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+ GT GK++  S    + +  G          T  SFA    + +          +
Sbjct: 114 KIVAIAGTHGKTTTTSLTAHMLKTIG----------TRPSFAVGANIPSLGTN------A 157

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L S        + S      +R           TN+  DH+D++ T  A   A    F 
Sbjct: 158 ELGSGSYFVAEADESDASFLNYR-----PDVIIVTNVEADHLDHYGTADAVHQA-FVDFA 211

Query: 236 ELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +LLP++   I  ADD  +  + +  RA  +  RV + G+                 + T 
Sbjct: 212 QLLPEDGLLICCADDEGANNLARKMRAARSDIRVQTYGFSDHADRRLSQAQATEDGRFTA 271

Query: 294 SVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++E    +       +PG+  + NA  A  + I  G++    L+ L        RFEF G
Sbjct: 272 TIEWGSGESRILDLAVPGQHNLLNAAAALAVGIDAGLEVQEALDALSSFSGAARRFEFKG 331

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                 R+Y DYAH    ++  L   RT+   GR+ VVF         +       AL L
Sbjct: 332 EAG-AVRVYDDYAHHPTEVQAALTAGRTVAGNGRLHVVFQPHLFSRTQEFYRQFAQALSL 390

Query: 410 ADIAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD   V D  P  E+P E + +E I   I    +      A+   +E     D+++  G 
Sbjct: 391 ADSVAVLDIYPAREEPIEGVNSELIASRIEVPAQVLAPAAAVAHVVEKAEPGDIIMTIGA 450

Query: 468 GHET 471
           G  T
Sbjct: 451 GDVT 454


>gi|149927250|ref|ZP_01915506.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
 gi|149823964|gb|EDM83187.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
          Length = 1024

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 156/407 (38%), Gaps = 37/407 (9%)

Query: 70   AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            A++++S   +     T+ +   +LVV +  + +              ++ VTG++GK++ 
Sbjct: 629  AVMITSGTQVPH---TLPTTAGVLVVKSIHQAVIFMGRHARRLFTGKLVGVTGSAGKTTT 685

Query: 130  ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + ++     SG  S   G                  P  +A  L+ +   G  ++ +E 
Sbjct: 686  VAMLKHAFNDSGHISATRG--------------NANLPYGVAWNLASM-ESGTDYMILEI 730

Query: 190  SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            +   + +  +   +      TN+G  H+++H+T +     K R+F  L+     A+I  D
Sbjct: 731  AIGRMKESAV-LARPHVAVVTNIGSAHLEFHKTIETIAKRKARIFWGLV-DGGIAVINRD 788

Query: 250  DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  ++  A+     V++ G   +   ++ +      ++V I VEG+ + F   +  +
Sbjct: 789  TECFDLILHEANKVKAVVITYGEHSE-SAVRLININDKDKEVEIQVEGRIYIFGSKVLSK 847

Query: 310  FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTS 366
              + N L  A + IA+ +     L+ L     +PGR E       G  I V    Y    
Sbjct: 848  HHISNMLCTAAVAIALDLPIDKTLKKLINFSPLPGRGEHFEAVIDGKTILVIDESYNANP 907

Query: 367  NSLEMILKNIRTITSGR---IIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             S++  ++  RT    R   +I+V       G   ++    ++ +I      + ++    
Sbjct: 908  LSMQAAIQGARTTARNRSSKLILVLGDMLQLGDQTEKLHLSLLPEILSPEIRLVVL---- 963

Query: 420  PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               E    ++  I       I   +  +A+   I  +   DV++  G
Sbjct: 964  -VGEQMALLKGHITDHA-EVIAVDSVEDALEPLIFGIRANDVVMAKG 1008


>gi|154498342|ref|ZP_02036720.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
 gi|150272653|gb|EDM99831.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
          Length = 491

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 143/408 (35%), Gaps = 37/408 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++ ++A    +   +      I V +  + + ++          +N L ++GT G
Sbjct: 104 KGAKLVIRTAAAHDDNPEISGAHARGIPVFERAQAWGAIMRGY------KNALCISGTHG 157

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    I   +  +   +    T+      +R+     I L               
Sbjct: 158 KTTTTSMCTHIAMAA-QADPTVMIGGTLPLLGAGHRVGRGDTIILESC------------ 204

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E  +  L                ++  DH+D+ +  +    +  R F +L+P++   +
Sbjct: 205 --EYCNSFLSFF------PTVAVILDIEADHLDFFKDLEDVEKS-FRTFADLVPEDGVIV 255

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
              DD  +   ++         ++ G +   +H   +          +  +G+ F     
Sbjct: 256 ANRDDENTMHTLEGEARPM---VTFGLEEGDVHAANLTWSRGLPTFDVIWKGQPFAHVSL 312

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PGE  V NAL AA   I +G+ +  V E L        RFE  G +  G  +Y DYAH
Sbjct: 313 RVPGEHNVKNALAAAASAIVLGMPAKAVEEGLSAFRGAARRFEHKG-SYHGAEVYDDYAH 371

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               L+ +L  +  +   RII  F                  L   D+ ++ +     ED
Sbjct: 372 HPGELKALLSAVSGLGYDRIICAFQPHTYSRTKALFDDFVQVLREPDVTLLAEIFAARED 431

Query: 425 PEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              I     ++   IPG        E      E+    D+++  G G 
Sbjct: 432 -NTIGISSRDLAAQIPGSRYFATLPELTDALAELAQPGDLILTVGAGD 478


>gi|300309679|ref|YP_003773771.1| UDP-N-acetylmuramate-L-alanine ligase [Herbaspirillum seropedicae
           SmR1]
 gi|300072464|gb|ADJ61863.1| UDP-N-acetylmuramate-L-alanine ligase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 475

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/426 (18%), Positives = 139/426 (32%), Gaps = 60/426 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+AIV S+A    +          I +V      L        G      +A+ GT GK
Sbjct: 64  GADAIVTSTAVKGDNPEVLAARKKHIPIVPRAVM-LGELMRLKKG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  +  + G   +F IG   T +                          G   V
Sbjct: 117 TTTTSLVASVLAQGGLDPTFVIGGRLTSAGANAKLGT------------------GEFIV 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S     +    +  +    TN+  DH++ +    A        F + LP    A+
Sbjct: 159 AEADESDASFLN----LTPVIEVITNIDADHMETYNHDFARLKQAFVEFTQRLPFYGVAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFL 303
           +  DD + +E+M         +L+ G+ +   +      A+  K + T+  +G       
Sbjct: 215 LCLDDPHVREIMPMVSKP---ILTYGFHEDADVRAIDAKAVDGKMEFTVIQDGYAPMQVS 271

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---------NSR 354
              PG   V NA  A  +   + +D A   + L + + V  RF   G           + 
Sbjct: 272 LNQPGMHNVQNACAAIAIARELDVDDAATQKALTEFNGVGRRFTRYGEVPLWDAEGKPAG 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DY H        +   R    GR +V+ F                  L   D+ 
Sbjct: 332 HFTLVDDYGHHPVETAATIAAARGAYPGRRLVLAFQPHRYTRTRDLFEDFVKVLSSPDVL 391

Query: 414 IVTDDNPRSEDPEKIRAE---IIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVL 462
           ++ +     E P  + A+   + H +            + G+  E IR  +      DV+
Sbjct: 392 VLAEVYSAGEAP-IVAADGRSLAHALRAAGKVEPVFVDDIGDMPETIRNVV---RDGDVV 447

Query: 463 VVAGKG 468
           +  G G
Sbjct: 448 MTMGAG 453


>gi|299065609|emb|CBJ36781.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CMR15]
          Length = 483

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 142/424 (33%), Gaps = 56/424 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL    +     ++S   + RL T         ++       + ++
Sbjct: 117 TTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIVAEADESDASFLN 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A        F   LP    A++
Sbjct: 171 ---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-----SVEGKDF 300
             DD   +E++         V+  G+            A+  + + T+            
Sbjct: 216 CVDDPNVREILPFVSKP---VVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG- 355
                LPG   V NAL A  +   + +    +++ L + + V  RF+  G     + +G 
Sbjct: 273 SITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGR 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAI 414
             +  DY H    +   L   R    GR +V+        + +      I  L   D  +
Sbjct: 333 FTLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFIKVLGTVDALL 392

Query: 415 VTDDNPRSEDP-------EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
           + +     E P          RA  + G   P F+E   +  +AI  A       DV++ 
Sbjct: 393 LAEVYAAGEPPIVAADGRALTRALRVAGKIEPIFVEQIEDMPQAILDA---AQDNDVVIT 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|85058428|ref|YP_454130.1| UDP-N-acetylmuramate--L-alanine ligase [Sodalis glossinidius str.
           'morsitans']
 gi|109892741|sp|Q2NVV0|MURC_SODGM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84778948|dbj|BAE73725.1| UDP-N-acetylmuramate-alanine ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 490

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 133/403 (33%), Gaps = 50/403 (12%)

Query: 89  NTPILVVDN-----TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + P +V          +   + A  +  +H    +A+ GT GK++  + V  I   +GL 
Sbjct: 91  DNPEIVAAKEVRIPVIQRAEMLAELMRFRHG---IAIAGTHGKTTTTAMVASIYAEAGLD 147

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              +      ++        +         ++       + +                ++
Sbjct: 148 PTFVNGGLVKAAGVHARLGCS------RYLIAEADESDASFL---------------HLQ 186

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +    TN+  DH+D +Q            F   LP    A++  DD   +E++ R    
Sbjct: 187 PMVAIITNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVIRELLPRVGR- 245

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGL 321
             ++ + G+     + +        +   T + + K D       PG     NA+ A  +
Sbjct: 246 --QITTYGFSDDADLRITDYRQDGARGSFTFTRQEKADLRVELNAPGRHNALNAVAAIAV 303

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF------EFVGTNSRGGRI--YVDYAHTSNSLEMIL 373
               GI+   +L+ + +      RF      + V  N + G +    DY H    ++  +
Sbjct: 304 ATEEGINDESILQAMLQFQGTGRRFDDLGHYDLVNVNGKTGEVMLVDDYGHHPTEVDATI 363

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------E 426
           K  R      R+++VF                  L   D+ ++ D  P  E P       
Sbjct: 364 KAARAGWPDKRLVMVFQPHRYTRTRDLYDDFANVLSGVDVLLMLDVYPAGEAPIPGADSR 423

Query: 427 KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   I   G    I   +      T  ++L   D++++ G G
Sbjct: 424 SLCRTIRGRGKVDPILVPDMETLPATLAQVLQDNDLVLMQGAG 466


>gi|125974689|ref|YP_001038599.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
 gi|125714914|gb|ABN53406.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
          Length = 882

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 150/423 (35%), Gaps = 41/423 (9%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           TR   +     L+ +   + + +   +G +   +  + I         ++G TST   F 
Sbjct: 460 TRNVAADILDMLFPEASPHSIPIVSVTGTNGKTTTTRLIGHTLACLGKKVGMTSTGGIFI 519

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            D  +          A   LSS+ V    +E +  G+ +  L       G  TN+  DH+
Sbjct: 520 GDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLADVGVITNIAEDHL 579

Query: 218 --DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-----------NAG 264
             D   T +    AK  + E + P    +++ ADD + +  M+RA            N  
Sbjct: 580 GIDGMNTLEDLAFAKSLVVEAVKP-GGYSVLNADDKFVRYFMERAKGEIILFSKNNSNPV 638

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +             K    I+N +   + +  K+    +    E  + N+L AA     
Sbjct: 639 VKEHMQKGGKALYVDKDSIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLAAASALYG 698

Query: 325 IGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + +    + + L   +      PGRF  V       ++ +DY H       ++K +  I 
Sbjct: 699 LNLSIEAIRKGLATFNPDMESNPGRFNIVDMGD--FKVMLDYGHNPAGYLEVMKFLDKID 756

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-----AEIIH 434
           + R++ V G  GDRD       G+I         + +D + R  +P ++      A I  
Sbjct: 757 AKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGEVAGILYDAVISS 816

Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           G        I   +R  A+  A+      D +V             N E+   V   + R
Sbjct: 817 GTKKENVEIIYSEDR--ALEKALLDAQPGDFVV---------MFYENFERAAEVVERVRR 865

Query: 491 EIL 493
           E+L
Sbjct: 866 ELL 868


>gi|312148181|gb|ADQ30840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi JD1]
          Length = 463

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 142/414 (34%), Gaps = 35/414 (8%)

Query: 27  ERKINEVSSDSRHIQAG----WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +    S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNIDDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLDGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFMALKNMILDLN 364

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
              +  +V         G    +G++A       I+   +   +    I  E +
Sbjct: 365 IQNKKFIVL--------GSFKELGELAYKTHKDLILEAISMNFDKIFLIGEEFL 410


>gi|254246418|ref|ZP_04939739.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
 gi|124871194|gb|EAY62910.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
          Length = 465

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 140/430 (32%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARRQGVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--T 351
            EG+     +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNK 458
             D  ++T+     E   P      +   +               +  +A+         
Sbjct: 382 TVDALVLTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKV---AQN 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|319899156|ref|YP_004159249.1| UDP-N-acetylmuramate--alanine ligase [Bartonella clarridgeiae 73]
 gi|319403120|emb|CBI76678.1| UDP-N-acetylmuramate--alanine ligase [Bartonella clarridgeiae 73]
          Length = 456

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 137/428 (32%), Gaps = 51/428 (11%)

Query: 59  FIPQAIAQ-GAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           +I       GA   +++S+A    +          + VV        L   R        
Sbjct: 37  YIGHHAENLGAAEVVIISTAIKKTNPEYIAAKKRHLPVVKRAEMLAELMRFR-------R 89

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  +    G     +     I+++  + R+     + +    S 
Sbjct: 90  TIAIGGTHGKTTTTSMVAALLDV-GRFDPIVINGGIINAYGTNARMGDGDWMVVEADESD 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                                    +       TN+  +H+D++    A   A  R F E
Sbjct: 149 --------------------GTFLKLPADIAVVTNIDVEHLDHYGNFNALREA-FRQFVE 187

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV- 295
            +P    A++  D    + ++ R H+          Q     L         Q++   + 
Sbjct: 188 NVPFYGFAVMCLDHPEVQTLVSRIHDRWVITYGANPQADVRFL---NLSMEGQKMYFDIL 244

Query: 296 --------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   + +  + + P+ G+  V NA  A  +   +G+    + + L +   V  RF 
Sbjct: 245 IRSQKTGEKTEINNLILPMSGKHNVSNATAAIAIAYELGVSPEAIKKGLAEFGGVKRRFT 304

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G +  G  I+ DY H    ++ +L   R    GR+I V                    
Sbjct: 305 KTG-DWNGVEIFDDYGHHPVEIKAVLHAARESAKGRVIAVVQPHRYTRLYHLFDDFSACF 363

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           + AD  ++T      E+P      +++   I + G           + I     +    D
Sbjct: 364 NDADTVMITPVYAAGEEPIAGFSSKELVEHIQMAGHRDVRLINTLEDVISIVSTLAKSGD 423

Query: 461 VLVVAGKG 468
            +V  G G
Sbjct: 424 YVVFLGAG 431


>gi|166033152|ref|ZP_02235981.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
 gi|166027509|gb|EDR46266.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
          Length = 515

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 148/421 (35%), Gaps = 59/421 (14%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGT 123
           G + +V ++A     +++ A ++   P+L    TR   L    +       +  +AV+GT
Sbjct: 125 GIDVVVYTAAIHKDNEEYQAAVQKGLPML----TRAELLGQLMTNY-----DIPIAVSGT 175

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  I   +G     I     + +   + R+   S I++ +A  Y +S    
Sbjct: 176 HGKTTTTSMISHIL-LAGEMDPTISVGGILKAIGGNIRVG-NSEIFVTEACEYTNSFLSF 233

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                                      N+  DH+D+ +  +   N+  R F +LLPK+  
Sbjct: 234 F-------------------PKISVILNIDEDHLDFFKDLEDIRNSFHR-FAKLLPKDGT 273

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDF 302
            +I  D      + +   +  C++++ G      +           + +   V+  +F  
Sbjct: 274 LVINGD---IDRLDEITGDLDCKLVTYGTNPSATYHAANVTHDELGEASFDLVKNGEFVD 330

Query: 303 LFPLPG--EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
              L    +  V NAL A  +   + ++ ++  + L++ H    RFE+ G  + G  I  
Sbjct: 331 RISLSVSGDHNVSNALAALAVADLLDVNVSVAKKGLKEFHGTDRRFEYKG-ETNGVTIID 389

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH    +   L          I  +F                 AL   D  I+ D   
Sbjct: 390 DYAHHPTEIAATLTAATHYPHREIWCIFQPHTYTRTKALFPEFVEALSHTDHVIMADIYA 449

Query: 421 RSEDP------EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E        ++I  E+          P F E  N        +    K DVL+  G G
Sbjct: 450 ARETDTLGVSSKQIADELKAKGCDAYYFPSFEEIEN------FCLTHCQKGDVLITMGAG 503

Query: 469 H 469
            
Sbjct: 504 D 504


>gi|168029598|ref|XP_001767312.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681376|gb|EDQ67803.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 138/414 (33%), Gaps = 57/414 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R ++AG  F+A+ G+  DGH F+ QA  +    +V +              +  
Sbjct: 138 SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEKQCAGVVAN--------WVPHGWSRG 189

Query: 92  ILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            + V+ +T   L   AS +  +    ++ +TG+ GK++  +      Q         G  
Sbjct: 190 FVQVEGDTLDALQALASDVRARFWGPVVGLTGSVGKTTARAMTTLALQ---------GLN 240

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +        + L +  S         + +  +  G      +  K       
Sbjct: 241 GHVHQAPGNFNNDIGVALTLLRLNSRSV---ACVLELGMNHAGEILELANTAKPDVRVLL 297

Query: 211 NLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G  H++      +    AK  +F    P +   I+ ADD  +   M     AG RV+ 
Sbjct: 298 NVGPAHMENFPGGLEEVAAAKGEIFRNARPGD-LCIVNADDPLA---MAVPLPAGVRVVR 353

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEG--------------------------KDFDF 302
            G  +G  + L     I+    +++ +E                              +F
Sbjct: 354 FGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNETVTRTRVEF 413

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGRI 358
             P PG     NA  AA +   +G+    V   L     +  R +          +   I
Sbjct: 414 EIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGPASHVQILVI 473

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              Y     S+E  L+ ++++ S R I + G   +  +        I     D 
Sbjct: 474 NDCYNANPMSVEASLQLLQSVKSNRRIALLGDMFELGEISLSSHKGILQLCVDF 527


>gi|76880174|dbj|BAE45859.1| MurF synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 138/414 (33%), Gaps = 57/414 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R ++AG  F+A+ G+  DGH F+ QA  +    +V +              +  
Sbjct: 138 SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEKQCAGVVAN--------WVPHGWSRG 189

Query: 92  ILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            + V+ +T   L   AS +  +    ++ +TG+ GK++  +      Q         G  
Sbjct: 190 FVQVEGDTLDALQALASDVRARFWGPVVGLTGSVGKTTARAMTTLALQ---------GLN 240

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +        + L +  S         + +  +  G      +  K       
Sbjct: 241 GHVHQAPGNFNNDIGVALTLLRLNSRSV---ACVLELGMNHAGEILELANTAKPDVRVLL 297

Query: 211 NLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G  H++      +    AK  +F    P +   I+ ADD  +   M     AG RV+ 
Sbjct: 298 NVGPAHMENFPGGLEEVAAAKGEIFRNARPGD-LCIVNADDPLA---MAVPLPAGVRVVR 353

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEG--------------------------KDFDF 302
            G  +G  + L     I+    +++ +E                              +F
Sbjct: 354 FGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNETVTRTRVEF 413

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGRI 358
             P PG     NA  AA +   +G+    V   L     +  R +          +   I
Sbjct: 414 EIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGPASHVQILVI 473

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              Y     S+E  L+ ++++ S R I + G   +  +        I     D 
Sbjct: 474 NDCYNANPMSVEASLQLLQSVKSNRRIALLGDMFELGEISLSSHKGILQLCVDF 527


>gi|332305226|ref|YP_004433077.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172555|gb|AEE21809.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 484

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/463 (17%), Positives = 156/463 (33%), Gaps = 58/463 (12%)

Query: 21  FPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + +   +R+ N +++  R    G  IF         GH      + Q A  +VVSSA   
Sbjct: 42  YQVSGSDRQANGMTN--RLAALGATIFF--------GHQ--ASNVEQ-ANVVVVSSAIDP 88

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +      +   I V+    + L+      +G      +A+ GT GK++  S +  I  +
Sbjct: 89  TNPEVNAANEKRIPVIRRA-EMLAELMRFRHG------IAIAGTHGKTTTTSLIATIFAQ 141

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +     ++ PT  I                    ++       + V              
Sbjct: 142 A-----ELDPTFVIGGLLNSAGTNARLGSS-QYLIAEADESDASFV-------------- 181

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH++ +Q            F   LP    A++  DD    E++ R
Sbjct: 182 -HLQPMVSVVTNIEPDHMETYQGDFDKMQDTYIDFLHNLPFYGLAVLCIDDPVITELLPR 240

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALV 317
                 + L+ GY +   +    V    N+ + T+   +  D       PG+  V N+L 
Sbjct: 241 IKR---KYLTYGYSENADVRATNVKHRFNQSEFTLIRKDHDDIQVTVNAPGKHNVLNSLA 297

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILK 374
           A  +     I  + +   L     +  RFE +G   T      +  DY H    +E  + 
Sbjct: 298 AIAVATDENIADSAIKTALANFSGIGRRFEMLGEFATGDGDVLLVDDYGHHPTEVEATIA 357

Query: 375 -NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEK 427
                    R+++ +                  L   D+ ++ D     E      D + 
Sbjct: 358 VARNNWPDRRLVMAYQPHRYSRTRDLYEDFVRVLSQVDVLLLLDVYSAGEEKIEGADSKS 417

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +   I   G    I   ++ E  +   + L+ QD+L+  G G+
Sbjct: 418 LCRSIRQRGQLEPIYVADKSELPKLLADNLSDQDILMTQGAGN 460


>gi|258542971|ref|YP_003188404.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256634049|dbj|BAI00025.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256637109|dbj|BAI03078.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256640161|dbj|BAI06123.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256643218|dbj|BAI09173.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256646273|dbj|BAI12221.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256649326|dbj|BAI15267.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256652312|dbj|BAI18246.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256655370|dbj|BAI21297.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 477

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 141/421 (33%), Gaps = 57/421 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+S+A    +          I VV        L   R         +AV GT GK+
Sbjct: 68  AQVVVISTAVKRDNPEVVAARAKLIPVVRRAEMLAELMRLRWS-------VAVGGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + + + L    I     I ++  + R+     +                  V
Sbjct: 121 TTTSLVAAVLEAAKLDPTVING-GIIEAYGTNTRMGKGDWM-----------------VV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RL  +       TN+  +H+D+  + +A   A    F   +P    A++ 
Sbjct: 163 EADESDGSFLRLPSV---ISVVTNMDPEHLDHWGSPEA-MEAAYDQFVSNVPFYGFAVLC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------KDF 300
            D    ++++ R  +          Q   +  +K+          +++         K  
Sbjct: 219 IDHPAVQQMIPRLSDHRIVTYGFSPQAD-VRAEKLITDKLGATFEVTLTDRVSRRTRKAG 277

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G   V NAL A  +   + I   ++   L     V  RF   G    G  +  
Sbjct: 278 PFRLPMLGSHNVQNALAAIAVATEMDISDDVIRSGLASFRGVKRRFTRTGEAG-GITVID 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +  +LK  R   +  +I V                   ++ AD  IV+D   
Sbjct: 337 DYGHHPVEIAAVLKAARQAGANHVIAVMQPHRYSRLKILFSDFCACMNDADTVIVSDVYA 396

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNR-----------IEAIRTAIEMLNKQDVLVVAGK 467
             ED  P+  R ++I G+    E+G+R            E I     +    D +V  G 
Sbjct: 397 AGEDPLPDASRDKLIEGLR---ERGHRSVVPLSSPDHLAEMIN---AIAKPGDYVVCLGA 450

Query: 468 G 468
           G
Sbjct: 451 G 451


>gi|254449007|ref|ZP_05062461.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
 gi|198261401|gb|EDY85692.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
          Length = 468

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 159/454 (35%), Gaps = 64/454 (14%)

Query: 34  SSDSRHIQ-AGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           S+++R ++ AG  IF+        GH      I    + IVVS+A    +          
Sbjct: 39  SANTRRLESAGARIFI--------GHS--AAHIEN-VDVIVVSTAVGEDNPEVVAAREAR 87

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I VV    + L+       G      +AV GT GK++  S    +    GL    +    
Sbjct: 88  IPVVPRA-EMLAELMRFRQG------IAVAGTHGKTTTTSLTASLLAEGGLDPTFV-IGG 139

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            ++S   + RL +         ++       + +                ++ +    TN
Sbjct: 140 KLNSAGTNARLGSGD-----YLVAEADESDASFL---------------ILQPVMSVVTN 179

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  DH+  +             F   LP    A++  DD   +E++ R     C+ L+ G
Sbjct: 180 IEPDHLATYGGSFEKLKDTFVEFLHHLPFYGLAVMCVDDPVVREILPRVT---CQTLTYG 236

Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVE-GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGID 328
            Q G  I    +          +++  GK  D     +PGE  V NAL A  +   +G+ 
Sbjct: 237 IQEGADIQAINLRFEGATSVFDVALPNGKRLDGITLNMPGEHNVQNALAALAIAHELGVS 296

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIR-TITSGRI 384
              +   L+    +  RF+ +G    G     +  DY H  + +   L+  R      R+
Sbjct: 297 GDSISSALQSFGGIGRRFQLLGDIQCGNGSVTLVDDYGHHPSEMSATLRAARNAWPDRRL 356

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGI------ 436
           +V F                  L  AD   +T+     E   P      +   +      
Sbjct: 357 VVAFQPHRYSRTQDLFEDFASVLSAADALCLTEVYAAGEPAVPGADGRSLAAAVRARGQV 416

Query: 437 -PGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            P F+E    +EA+   ++ +L + DVL+  G G
Sbjct: 417 NPVFVES---VEALPEVLQGVLEEGDVLLTLGAG 447


>gi|159028776|emb|CAO89947.1| cphA [Microcystis aeruginosa PCC 7806]
          Length = 877

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 138/373 (36%), Gaps = 31/373 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ILA+TGT+GK++ +  +  IC+++G     +G T+T   +  D  +          A  
Sbjct: 489 PILAITGTNGKTTTSRLISHICRQTGKV---VGFTTTDGVYIDDYLVEKGDNTGPYSASM 545

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LF 234
            L    V    +E +  G+ +  L   +   G   N+  DH+           AK++ + 
Sbjct: 546 ILKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVV 605

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVGYQGKFIHLKKV 282
            E++  E  A++ ADD  +  + ++                    +  G          +
Sbjct: 606 AEVVSAEGYAVLNADDPLTASMAEKVKGRVAYFSMSPDNPIIHDHIRRGGMAAIYENGYL 665

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341
             +  +  + I  E  +          F + NAL A       GID  L+ + +      
Sbjct: 666 SILEGEWTLRIE-EAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFKPS 724

Query: 342 ---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGR            I  DYAH     E +   +    SG  + V G  GDR    
Sbjct: 725 VAQTPGRMNLFDLGHHHALI--DYAHNPAGYEAVGGFVGNW-SGEKVGVVGGPGDRRDDD 781

Query: 399 RPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRT 451
             ++GK++  + D  IV +DN  R     ++   I+ GI             +  EA+  
Sbjct: 782 LILLGKLSAQMFDRIIVKEDNDTRGRRRGEVADLILRGISQENASLRPEVILDETEALEK 841

Query: 452 AIEMLNKQDVLVV 464
           A+  +++  ++V+
Sbjct: 842 ALSTVSEGGLVVI 854


>gi|154252864|ref|YP_001413688.1| UDP-N-acetylmuramate--L-alanine ligase [Parvibaculum
           lavamentivorans DS-1]
 gi|171769613|sp|A7HVU8|MURC_PARL1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154156814|gb|ABS64031.1| UDP-N-acetylmuramate--alanine ligase [Parvibaculum lavamentivorans
           DS-1]
          Length = 491

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/429 (21%), Positives = 144/429 (33%), Gaps = 45/429 (10%)

Query: 59  FIPQAIAQGAEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI Q     AEA  IVVSSA    D    + +    L V    + L+           ++
Sbjct: 57  FIGQKAENLAEAQVIVVSSAIRA-DNPELMEARARFLPVVRRAEMLAELMRL------KS 109

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  I  ++GL    I     I+++  + RL     + +    S 
Sbjct: 110 CVAIGGTHGKTTTTSLVAAILDKAGLDPTVING-GIINAYGTNARLGGGEWMVVEADESD 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                                    +       TN+  +H+DY+ +  A  +A    F E
Sbjct: 169 --------------------GTFVKLPATIAIVTNIDPEHLDYYGSFDAAKDA-FLAFVE 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P    A++  D    + ++ R  +          Q                      +
Sbjct: 208 NVPFYGAAVMCIDHPEVQALIGRVRDRRIVTYGTNPQADIRATNARVEDGFNVFDVAITD 267

Query: 297 GKDFD------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            K             + G   + N+L A G+   +GI    +   LE    V  RF FVG
Sbjct: 268 RKTGTAREMTGVRLAMHGTHNMLNSLAAIGVATQMGIADDKIRAALEGFGGVKRRFTFVG 327

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +      IY DY H    +  +L+  R+ T GR I V                    + A
Sbjct: 328 SW-NDVNIYDDYGHHPVEIAAVLQAARSATKGRTIAVVQPHRYTRLHNLFDEFCACFNDA 386

Query: 411 DIAIVTDDNPRSEDP--EKIRAEIIHGIPG----FIEKGNRIEAIRTAI-EMLNKQDVLV 463
           D  IV D     E P     R  ++ G+       +   +  EA+   I E     D++V
Sbjct: 387 DAVIVADVYEAGEKPIEGASRDALVEGLRDRGHRNVMALDGPEALPRLIAETARPGDLVV 446

Query: 464 VAGKGHETV 472
             G G  T 
Sbjct: 447 CLGAGSITY 455


>gi|56476226|ref|YP_157815.1| UDP-N-acetylmuramate--L-alanine ligase [Aromatoleum aromaticum
           EbN1]
 gi|81358257|sp|Q5P6Z7|MURC_AZOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56312269|emb|CAI06914.1| UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)
           (UDP-N-acetylmuramoyl-L-alanine synthetase), gene: MURC
           OR RSC2843 OR RS00262 [Aromatoleum aromaticum EbN1]
          Length = 471

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 140/432 (32%), Gaps = 54/432 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           +  A     GA+A+V+S+A    +       +  + +V        + A  +  KH    
Sbjct: 55  VGHAAENVAGADAVVISTAVRNDNPEVVAARSRHVPIVPR----AQMLAELMRLKHG--- 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  I    G+      PT  I                L  A +  
Sbjct: 108 IAIAGTHGKTTTTSLVASILAEGGMD-----PTFVIGGK-------------LNAAGANA 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  +  EA         L     +    TN+  DH+D +    A        F + 
Sbjct: 150 RLGKGDFLVAEADESDASFLLL---TPVISVITNIDADHMDTYGHDFARLKQAFVDFLQH 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV-TISV 295
           LP    A++  DD + + +M        +V+  G  +   I  + V A   +     +  
Sbjct: 207 LPFYGVAVLCEDDPHVRSIMPLVSK---QVVRYGLSESANIRAENVRAEGGRMLFDVVRT 263

Query: 296 EG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF----- 348
            G          LPG   V NAL A  +   + +  A +++ L +   V  RF+      
Sbjct: 264 NGSVSRLPIELNLPGVHNVLNALAAIAVATEVQVPDAAIIKALAEFRGVGRRFQRYGEVA 323

Query: 349 ----VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMG 403
                GT      +  DY H    +   L   R    GR +V+ F               
Sbjct: 324 LRDAEGTPQGSCTLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYTRTRDCFEDF 383

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEML 456
              L   D  ++ +     E P        +   I + G    +   +  E   T +  +
Sbjct: 384 VKVLSTVDALLLAEVYAAGEAPVVAADGRSLARAIRVAGKVEPVFVEDIDEMPATVLAAV 443

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 444 RDGDVVITMGAG 455


>gi|325282928|ref|YP_004255469.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
 gi|324314737|gb|ADY25852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
          Length = 438

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 153/440 (34%), Gaps = 62/440 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   A   FVA+ G ++ G+ FI  A+ +GA  ++     +      T+      
Sbjct: 24  LTWDSRQADADTAFVALPGERDHGNRFIEAALERGAPFVLTDLPGAASRLPRTVE----- 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V ++   L+ +A +   K+P  ++ VTG+ GK++  S+V             +   +T
Sbjct: 79  --VPDSLAALTAWAQQERAKNPL-VVGVTGSVGKTTTKSYVAAALDA-----HYMPVYNT 130

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           I + A        S   L              V +     G     +  ++   G  T++
Sbjct: 131 IPAIACFLTEFGSSERPL-------------VVEMGIDRVGEMDRLISLVRPDVGVLTSI 177

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++   + +     K ++        SP  +  + A      +  +      L V +
Sbjct: 178 GAAHLEGLSSLEVIAQEKGKIL------HSPRALVGNQARVWFPEQEIYGFSTPELPVQH 231

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G+ + + +  A    +  T+ +                     +   L    G+  A  
Sbjct: 232 SGQDLRVNEQGADFTYRGQTVHLPNAAQVQAEAAV---------LGLYLAETYGVPLAAA 282

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           ++ +E++ V  GR++          +  D Y  +  +++  L  ++     RI V+    
Sbjct: 283 IQRVEQVQVPSGRYQIHSGRY---TVIDDAYNASPLAVQAALSALQNFRGRRISVLGTML 339

Query: 392 G--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
                       +G+ A + AD+       P +E         + G            A+
Sbjct: 340 ELGPTAPELHAEVGRSACESADLCF--GVGPYAE---------LLGHHAHRTVPELTAAL 388

Query: 450 RTAIEMLNKQDVLVV-AGKG 468
           +     +   DV++V A +G
Sbjct: 389 K---AEVQDGDVILVKASRG 405


>gi|219684602|ref|ZP_03539545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
 gi|219671964|gb|EED29018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
          Length = 463

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 141/400 (35%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQAG----WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ ++  S DSR I        ++ A  GNK DG  F+   I  G +  + +  +  +  
Sbjct: 25  EKVVSFYSLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  +     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+G  H+   +  Q+    K ++  + +      +    + Y   + KRA 
Sbjct: 192 LKPEIVIITNIGYAHMQAFKELQSIAFEKSKIIGKNIE---IFVANEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + +++K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFESLNIKSFSFLEGKFSYDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y    +S   +   I  + 
Sbjct: 307 ALFLGMREKEIREGLIETAFQKGRAEILTKN--GYLILNDSYNGNMDSFMALKNMILDLD 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
             G+  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQGKKFMVLGSFKELGEFSYKTHKDLIKEAVSMNFDKIFL 404


>gi|120597222|ref|YP_961796.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|146291595|ref|YP_001182019.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
 gi|166224730|sp|A4Y2N7|MURC_SHEPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224732|sp|A1REZ7|MURC_SHESW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120557315|gb|ABM23242.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|145563285|gb|ABP74220.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
          Length = 488

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 142/409 (34%), Gaps = 44/409 (10%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S+A + ++          I +V    + L+      +G      +A+ GT GK++  S +
Sbjct: 86  STAINAENPEIIAAKELRIPIVRRA-EMLAELMRYRHG------VAIAGTHGKTTTTSLI 138

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +  ++G       PT  I                    ++       + +        
Sbjct: 139 ASVYGQAGRD-----PTFVIGGLLNSAGTNARLGTSRY-LIAEADESDASFL-------- 184

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   ++ +    TN+  DH+D +        +    F   LP    A++  DD   
Sbjct: 185 -------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVV 237

Query: 254 KEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQ 311
           +E+M R       +++ G+     +         ++ + T+  +GK D D L  LPG+  
Sbjct: 238 REIMPRIGR---HLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNLPGQHN 294

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNS 368
           V NAL A  +     ID + +++ L +   +  RF+ +G   T      +  DY H  + 
Sbjct: 295 VLNALAAIAVATEDEIDDSALIQALAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSE 354

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
           +   +K  R      R+++ +                  L   D  ++ D     E P  
Sbjct: 355 VAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEVLSQVDCLLLLDVYSAGEAPIT 414

Query: 426 ----EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 +   I + G    I   +  +      ++L + D+L+  G G+
Sbjct: 415 GADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLLTQGAGN 463


>gi|295677761|ref|YP_003606285.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437604|gb|ADG16774.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
          Length = 467

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 136/434 (31%), Gaps = 61/434 (14%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A     GA A+VVS+A    +       +  I +V      L+       G      
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVM-LAELMRLKQG------ 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  +    GL      PT  I                  + +S  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLISAG 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++  +       +           +  +    TN+  DH+D +    A        F   
Sbjct: 147 ANARLGTGDFIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-SV 295
           LP    A++  DD   KE++         ++  G           V A   +   T+   
Sbjct: 207 LPFYGIAVLCVDDPNVKEILPFVSKP---IIRYGLAADAQVRAVNVEAREGRMHFTVMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---- 351
           +    D    LPGE  V NAL A  +   + +  A +   L   + V  RF+  G     
Sbjct: 264 DAAPLDVTLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVV 323

Query: 352 ----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
                +    +  DY H    +   +   R    GR +V+ F                  
Sbjct: 324 SDGQAAGSYTLVDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKV 383

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE------------AIRTAIE 454
           L   D  ++T+     E P  I A     +   +    ++E            A+ T + 
Sbjct: 384 LSTVDALVLTEVYAAGEAP--IVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVV- 440

Query: 455 MLNKQDVLVVAGKG 468
                DV++  G G
Sbjct: 441 --RDGDVVITMGAG 452


>gi|160942737|ref|ZP_02089979.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446011|gb|EDP23014.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
          Length = 461

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 130/409 (31%), Gaps = 40/409 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S+A S  +      ++  I  V+ +             +  +  + V+GT GK
Sbjct: 74  GADMVVYSAAISKDNVELNAAASYGIPTVERSVLL------GYVSRLYKQSICVSGTHGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +    + +G       P++ I            +                  + 
Sbjct: 128 TTTTSMITTALELAGRD-----PSAVIGGKLPLINGYGKAGKG-------------DDIV 169

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EA            +        N+  DH+DY+ +       K       L  +     
Sbjct: 170 IEACEFAE---TFLKLTPYLSVVLNIDNDHLDYYGSMGEL---KFAFKRFALMTQFMIFA 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----DF 302
            ADD  + +VM   +    RV +        +       +        ++  +       
Sbjct: 224 NADDKNTMDVM---YTLDRRVRTFAIDNHADYRAVNVNEYKPGFFEFDLKEWNTTDTTRI 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   +YNAL    +C  +G+ +    E          RFE  G    G  +  DY
Sbjct: 281 RLSVPGRHNIYNALAMCAVCRFVGLSAEQCAEAALNFKGAGRRFEVYG-ECNGALVIDDY 339

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    L   L   + +   R+I V                   L + DI ++T      
Sbjct: 340 AHHPTELRATLNTAKEMGYKRLIAVHQPFTYSRTKMLFNDFVDVLKIPDITVLTPIMGSR 399

Query: 423 E--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E  DP    A++   IPG +   +  EA     +     D+++  G G 
Sbjct: 400 EPNDPTITSAKLAAQIPGSVLVNSLQEAADWVKQNAKPGDLVITLGCGD 448


>gi|225351404|ref|ZP_03742427.1| hypothetical protein BIFPSEUDO_02998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157748|gb|EEG71031.1| hypothetical protein BIFPSEUDO_02998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 422

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 163/424 (38%), Gaps = 30/424 (7%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRS---GLSSFQIGPT 150
           + RK +SL ++  YG +P+N L + G +G       A   Q +         + F     
Sbjct: 3   DARKAMSLLSAAFYG-YPQNQLKIIGITGTKGKTTTAYLTQAMLNGCSCGKCALFSSADN 61

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   ++ LTTP  +   + +   +  G+ ++ +E SS      R+ G+     +F 
Sbjct: 62  CLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEVSSQAYKVDRVFGLTFDVAAFL 121

Query: 211 NLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           N+  DHI    H T + YF+ K ++ +         ++    A++  + + A  A   V 
Sbjct: 122 NISPDHISPIEHPTFEDYFHCKRQIVKNC----RSLVLGTACAHADLIRQDAAIADIPVT 177

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326
           +    +     +       +  +  I+VEG+        L G+F   NA  A  +  A+G
Sbjct: 178 TFALGEASAADVTAWPESADHSRFAIAVEGEQIGSLSLQLDGDFNYANAAAAIAIAHAVG 237

Query: 327 IDSALV--LEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            D       E L  +  V    R E            VDYAH   S+  +L  +      
Sbjct: 238 FDFHETAAKEALRNMEPVRIAGRMEHFHDTKSNTIAIVDYAHNYASVTALLDYVYQRYGK 297

Query: 383 R---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
               + +V G  G++   +R  + + A +  +  I+T ++   E  E +  +++  +   
Sbjct: 298 DDPEVTLVTGSAGNKAYDRRSEIVRAAQNRVNHLILTFEDTDDEPVEHVCQDMLDSVTNP 357

Query: 439 ---FIEKGNRIEAIRT--AIEMLNKQ--DVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   +R EA+ +  AI+  N     ++++ GKG+E              D  I+  
Sbjct: 358 DLDARIILDRTEAVESTVAIDRKNPNRLHIILIIGKGNERWFKDHGKHIPFEGDDHIVER 417

Query: 492 ILGL 495
           I GL
Sbjct: 418 IFGL 421


>gi|256005655|ref|ZP_05430613.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
 gi|255990413|gb|EEU00537.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
          Length = 824

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 150/423 (35%), Gaps = 41/423 (9%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           TR   +     L+ +   + + +   +G +   +  + I         ++G TST   F 
Sbjct: 402 TRNVAADILDMLFPEASPHSIPIVSVTGTNGKTTTTRLIGHTLACLGKKVGMTSTGGIFI 461

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            D  +          A   LSS+ V    +E +  G+ +  L       G  TN+  DH+
Sbjct: 462 GDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLADVGVITNIAEDHL 521

Query: 218 --DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-----------NAG 264
             D   T +    AK  + E + P    +++ ADD + +  M+RA            N  
Sbjct: 522 GIDGMNTLEDLAFAKSLVVEAVKP-GGYSVLNADDKFVRYFMERAKGEIILFSKNNSNPV 580

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +             K    I+N +   + +  K+    +    E  + N+L AA     
Sbjct: 581 VKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLAAASALYG 640

Query: 325 IGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + +    + + L   +      PGRF  V       ++ +DY H       ++K +  I 
Sbjct: 641 LNLSIEAIRKGLATFNPDMESNPGRFNIVDMGD--FKVMLDYGHNPAGYLEVMKFLDKID 698

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-----AEIIH 434
           + R++ V G  GDRD       G+I         + +D + R  +P ++      A I  
Sbjct: 699 AKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGEVAGILYDAVISS 758

Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           G        I   +R  A+  A+      D +V             N E+   V   + R
Sbjct: 759 GTKKENVEIIYSEDR--ALEKALLDAQPGDFVV---------MFYENFERAAEVVERVRR 807

Query: 491 EIL 493
           E+L
Sbjct: 808 ELL 810


>gi|313888807|ref|ZP_07822468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845176|gb|EFR32576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 517

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 125/352 (35%), Gaps = 18/352 (5%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +L +TG+ GK+SV      I          +   +T SSF     L+      L +   
Sbjct: 168 KVLGITGSFGKTSVKFISDTILSE------GLRVKNTPSSFNTPMGLSKIINNELER--- 218

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + V    + A   G      + ++   G  T +G  H+   +T +     K  L E
Sbjct: 219 ---DREVFIAELGAKVPGEIHEVAELVQPDIGIITAIGPTHMHLFKTIENIQKTKYELIE 275

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +L P++  AI   D+ Y K +  +      R  +  +    ++  ++       +  + +
Sbjct: 276 DL-PEDGIAIFNYDNDYVKPLADKTKKKTYRYGTKDFDKLDVYADEIKVNETGSEFVLHI 334

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G  +      L G   + N L AA     +G+    +   + K+  V  R   + +++ 
Sbjct: 335 KGGGEIKCSTRLLGVHNISNLLAAATAAHVLGLSLEEIQRGISKVEPVEHRLSLIPSSNN 394

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLAD 411
              I   +          L  +R     R I++        D ++ +   +G++  D+ D
Sbjct: 395 TIVIDDAFNSNPVGFRAALDVLREFKDHRKIIITPGMVELGDMEEEENRKIGQVMADVLD 454

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            AI+     R+    +   +            +  EA +   ++    DV++
Sbjct: 455 FAILVGKK-RTLPIYEGLKDKNFDEEKIYRVSSLDEATKVLAKISMAGDVVL 505


>gi|78065122|ref|YP_367891.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
 gi|109892696|sp|Q39JW9|MURC_BURS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77965867|gb|ABB07247.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
          Length = 465

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 141/429 (32%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH  +   I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHDAVN--IE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            +G+     +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 RDGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 352 --NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
             +     +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 AADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQ 459
             D  ++T+     E    I       +   +    +++ +  A          ++    
Sbjct: 382 TVDALVLTEVYAAGE--AAISTANGDALSRALRTVGKVDPVFVATVDDVPDALAKVAQNG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|46201829|ref|ZP_00208265.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 476

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 102/282 (36%), Gaps = 17/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   A   TN+  +H+D++ T +    A  R F E +P    A +  D    + ++ R  
Sbjct: 174 LPSTAVVVTNIDPEHMDHYGTVEKLHEA-FRTFVENIPFYGFAAMCIDHPEVQALVARVP 232

Query: 262 NAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNA 315
           +         +Q           +        +T  V G          P+ GE  V N+
Sbjct: 233 DRKLVTYGFNHQALVRVENLTMDIKGASYDVVITDRVTGATRTISGIHLPMYGEHNVLNS 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +   +G+ + +V + L     V  RF   G  ++G  +  DY H    +  +LK 
Sbjct: 293 LAAIAVANELGLPNDVVKKALGGFKGVKRRFTRTG-EAKGVTVIDDYGHHPVEIAAVLKA 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R+   G +I V                    + AD+ IV D     E P +   +    
Sbjct: 352 ARSACQGNVIAVVQPHRYSRLSSLFAEFCTCFNDADMVIVADVYAAGEKPMEGFDK-TAL 410

Query: 436 IPGFIEKGNRI-------EAIRTAI-EMLNKQDVLVVAGKGH 469
           + G  E G+R        +A+   +  +    D++V  G G+
Sbjct: 411 VKGLQEHGHRRVMALAEPQALAPLVNSLAGPGDMVVCLGAGN 452


>gi|308048069|ref|YP_003911635.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
 gi|307630259|gb|ADN74561.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
          Length = 486

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 152/435 (34%), Gaps = 53/435 (12%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    + +   A+ +VVS+A   ++          I VV    + L+      
Sbjct: 64  GAAVHIGHS--AEWVED-ADVVVVSTAIREENPEIRAARERRIPVVRRA-EMLAELMRFR 119

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +G      +AV GT GK++  S    +  + GL      PT  I            + + 
Sbjct: 120 HG------IAVAGTHGKTTTTSLTASLFGQGGLD-----PTFVIGGKLNSAGT--NAQLG 166

Query: 170 LAKAL-SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           L + L +       + +                ++ +    TN+  DH+D +        
Sbjct: 167 LGRYLVAEADESDASFL---------------HLQPMISVVTNIEPDHMDTYGGDINKLY 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHN 287
                F   LP    A++  DD   + ++ R      R+++ G+     +  +    +  
Sbjct: 212 DTFVDFLHNLPFYGVAVLCLDDPGVQVILPRVGR---RIVTYGFHPDADVRAEDFVQVGT 268

Query: 288 KQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           + Q T+    +D    +  LPG   V NAL A  + +  G++   +   L++   +  RF
Sbjct: 269 RTQFTLHRPNRDPLPLVLNLPGRHNVQNALAAIAVAMEEGVEDDAIEAALDQFQGIGRRF 328

Query: 347 EFVGTNSRGG---RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIM 402
           +  G    G     +  DY H  + + + +K  R +    R+++VF              
Sbjct: 329 QQYGEFDTGAGKVLLVDDYGHHPSEVAVTIKAARASWPDRRLVMVFQPHRFSRTRDLYDD 388

Query: 403 GKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGI------PGFIEKGNRIEAIRTAIE 454
               L   D  ++ +     ED  P      +   I      P ++     + A+    +
Sbjct: 389 FCAVLSEVDCLLLMEVYSAGEDLIPGADSRALCRSIRQRGIDPVYVPGPEGLPALLA--D 446

Query: 455 MLNKQDVLVVAGKGH 469
            L   DV++  G G+
Sbjct: 447 QLQDGDVVLTQGAGN 461


>gi|195941342|ref|ZP_03086724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi 80a]
          Length = 463

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 139/400 (34%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +    S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLEGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI--RT 378
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I    
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFMALKNMILDLD 364

Query: 379 ITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV 415
           I S + IV+      G    +  + ++ +      D   +
Sbjct: 365 IQSKKFIVLGSFKELGELAYKTHKDLILEAISMNFDKIFL 404


>gi|113460505|ref|YP_718569.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
 gi|123131920|sp|Q0I1D2|MURC_HAES1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|112822548|gb|ABI24637.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
          Length = 476

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 137/415 (33%), Gaps = 42/415 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VVSSA    +          I V+    +   + A  +  +H    +A+ GT GK
Sbjct: 77  GASVVVVSSAIKGDNIEVITAHEKRIPVI----QRAQMLAEIMRFRHG---IAIAGTHGK 129

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V  I  ++GL    +      S+        +         ++       + + 
Sbjct: 130 TTTTAMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGCS------RYLIAEADESDASFL- 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAI 245
                          ++ +    TN+  +H++ YH   +      +  F   LP    ++
Sbjct: 183 --------------HLQPMVSVVTNIEPEHMETYHGDFEEMKQTYVN-FLRNLPFYGLSV 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD    E+  +             +  +                ++  G+  D L  
Sbjct: 228 MCADDPVLMELSSQV-GRQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERIDVLLN 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDY 362
           +PG+    NA  A  +    GI++  +L  L +      RF+ +G     +    +  DY
Sbjct: 287 VPGKHNALNATAALTVAKEEGIENEAILTALAEFQGAGRRFDQLGQFIRPNGKVMLVDDY 346

Query: 363 AHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H    + + ++  R     + IV +F                  L   D+ I+ D    
Sbjct: 347 GHHPTEVNVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDVLIMLDVYAA 406

Query: 422 SE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E      D   +   I + G    I   +  +      +++   D+++  G G+
Sbjct: 407 GEQAIAGADSRSLCRSIRNLGKVDPILVSDHKQLAEIVDQVIQDGDLILAQGAGN 461


>gi|118618794|ref|YP_907126.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium ulcerans
           Agy99]
 gi|166224709|sp|A0PTI6|MURC_MYCUA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118570904|gb|ABL05655.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium ulcerans
           Agy99]
          Length = 488

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 107/289 (37%), Gaps = 30/289 (10%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ + +AY       F E L      ++ ADD  S  + +R+   
Sbjct: 183 PHVAVVTNIEADHLDFYGSTEAYV-GVFDAFVERLAPGGALVVCADDPGSAALAERSAEL 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-------QVTISVEGKDFDFLFPLPGEFQVYNAL 316
           G RVL  G  G          +  +Q       Q+ ++ E         +PG     N L
Sbjct: 242 GIRVLRYGSAGHAGAALAATLVSWEQRGTGAVAQIQLAGEADPRSMRLSVPGRHMALNVL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    I +G     VL+ L     V  RFE VGT +   R++ DYAH    +   L+ +
Sbjct: 302 GALLAAIEVGAPVGEVLDGLAGFEGVRRRFELVGT-AESVRVFDDYAHHPTEVRATLEAV 360

Query: 377 RTIT----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           R++     SGR++VVF                 ALD AD   V D     E P       
Sbjct: 361 RSVVRQSGSGRLLVVFQPHLYSRTKAFAAEFGSALDAADEVFVLDVYAAREQP------- 413

Query: 433 IHGIPGFIEKGNRIEAIRTAIEML----------NKQDVLVVAGKGHET 471
           + GI G     +    +R   +               DV+V  G G  T
Sbjct: 414 LTGISGASVAEHVTVPVRYLRDFSAVAEVVAAAAGPGDVVVTMGAGDVT 462


>gi|255020014|ref|ZP_05292087.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970543|gb|EET28032.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
          Length = 465

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 132/382 (34%), Gaps = 45/382 (11%)

Query: 51  GNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G +   GH     A  +GA+ +V+SSA    +          I V+    + L+      
Sbjct: 50  GARIFSGH---EAANVRGADVVVISSAVPESNPEVQAAREQRIPVIRRA-EMLAELMRFR 105

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G      +AV GT GK++  S V  I   +      + PT  I                
Sbjct: 106 QG------IAVAGTHGKTTTTSLVASILAAA-----DLDPTFVIGG-------------L 141

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L  A +        ++  EA         L     +    TN+  DH+D +         
Sbjct: 142 LKSAGTNARLGDGEYLVAEADESDASFLYLA---PVMAVVTNIDADHMDTYGGSLEELRR 198

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNK 288
               F + LP    A++  DD   + ++    +    VL  G+     +  +    +  +
Sbjct: 199 AFLQFLQRLPFYGLAVLCTDDPLVRGLIPELRSP---VLGYGFSASADLQARHWHQVGGR 255

Query: 289 QQVTI--SVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +  +   V+G+   +L     +PG   V NAL A G+   +G+ +  +   L     V 
Sbjct: 256 SRFEVWRRVDGEAVHWLDAELAIPGRHNVLNALAAIGIASKVGVRAETIQAALADFRGVG 315

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RFE +G  + G  I  DY H    LE  L   R +      +V      R    R +  
Sbjct: 316 RRFEILGDFA-GITIVDDYGHHPRELEATLAAARDMWP-DRPIVLAFQPHRFSRTRDLFA 373

Query: 404 KI--ALDLADIAIVTDDNPRSE 423
                L  AD +++ D     E
Sbjct: 374 DFVEVLGKADRSVLLDIYGAGE 395


>gi|254470266|ref|ZP_05083670.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
 gi|211960577|gb|EEA95773.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
          Length = 473

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 139/429 (32%), Gaps = 50/429 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      +  GA+  V+SSA    +          + VV        L          +
Sbjct: 58  GH--AADNLE-GADVCVISSAIKGSNVELKAARENNMPVVRRAEMLAELMRF-------K 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   +G     +     I+++  + R+     + +    S
Sbjct: 108 QAIAIGGTHGKTTTTSMVAALLD-AGHMDPTVINGGIINAYGTNARMGEGDWMVVEADES 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  +H+D++        A  + F 
Sbjct: 167 D--------------------GTFVKLPADIAVVTNIDPEHLDHYGDFDGVRAAFAQ-FV 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           E +P    A++  D    + ++ +  +   R+++ G      +    V     K   ++S
Sbjct: 206 ENVPFYGFAVMCLDHPEVQSLVGQIEDR--RIITYGTNPQADVRFTDVSTKGGKSIFSVS 263

Query: 295 VEGKDFD-------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +  D        + P+PG   V NA  A  L  ++GI    + + L     V  RF 
Sbjct: 264 IHDRRGDKVTELQDLVLPMPGLHNVSNATAAIALAHSLGISGENIRKGLASFGGVKRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G+   G   + DYAH    ++ +L   R    G++I V                    
Sbjct: 324 HTGSW-NGVEFFDDYAHHPVEIKSVLHAAREAAEGKVIAVMQPHRFTRLQSLFEDFCACF 382

Query: 408 DLADIAIVTDDNPRSE-------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           + AD  ++       E        P+ I      G           E      E+    D
Sbjct: 383 NDADKVVIAPVFAAGEQPIEGADQPDLISGLRAGGHRSVHSIAGPDELAGKIAELAEPGD 442

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 443 LVICLGAGN 451


>gi|126658806|ref|ZP_01729950.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. CCY0110]
 gi|126619904|gb|EAZ90629.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. CCY0110]
          Length = 522

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 145/427 (33%), Gaps = 54/427 (12%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +    +++A      PI    +    L               +AV GT GK++
Sbjct: 114 VICSTAIAHSNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTT 164

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++G+    I     + ++  + R+       +A+A              +
Sbjct: 165 TSSLIGYMLLKAGVDPTII-VGGEVDAWEGNARIGAKGGYLVAEA--------------D 209

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++QT         ++FE      +   +  
Sbjct: 210 ESDGSLTKHY-----PNIGIVTNIELDHPDHYQTLDDVVKT-FQIFE------TQCDLLI 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
                + V  +   +    L    +G    +K + + H      +  +G+   +    +P
Sbjct: 258 GCLDCETVATQLTPSITYSLD-STKGADYTVKNIVSNHKGTTAEVWEKGRYLGEMRLTIP 316

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A  +   +G+D  ++ + L        RFE  G    G     DYAH  +
Sbjct: 317 GSHNVSNALAAIAVGRKLGLDFGVIADALFTFAGAKRRFEHRGH-CNGITFIDDYAHHPS 375

Query: 368 SLEMILKNIRTITSGRII----VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +E  L   R    G  I     +F                     AD+ I+TD     E
Sbjct: 376 EIEATLSAARCKVDGENISRVVAIFQPHRYSRTATFLKEFAACFKDADLVILTDIYSAGE 435

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVT 476
                   + +   I H     I + +    +   + + L   D+++  G G+    I+ 
Sbjct: 436 VNLHNISGQDLAEAIKHNHSHVIYEPSLKH-LHQVLPDFLQSGDLVMFLGAGN-LNQIIP 493

Query: 477 NGEKKMS 483
               +  
Sbjct: 494 QVITQYE 500


>gi|254303964|ref|ZP_04971322.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148324156|gb|EDK89406.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 468

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/418 (19%), Positives = 141/418 (33%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++ S+A    +   +   N  I       K   L A  L     E  +AV GT G
Sbjct: 67  KGADYVIASTAIKETNPELSYAKNNGI----TLLKRGELLAKLLNR---ETGIAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    E +   +  AI
Sbjct: 172 FM---------------NPKYAVITNIDADHLDVHGNLDNI---KKSFIEFICHTQKEAI 213

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    KE + R          S+  +   I  K +     K      V  +   +F 
Sbjct: 214 ICMDCENLKEAVTRLPEGKSVTTYSIKDENASIFAKNIRIEDRKTIFDFYVNKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L +  G+    + E L K      R++ +         G  ++
Sbjct: 274 LNIPGEHNISNSLPVIYLALKFGVSKEEIQEALSKFKGSKRRYDVLFDKELENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I + R++ +F               K A    D  I
Sbjct: 334 RVRIVDDYAHHPTEIKATLKAIKSIDTSRLVAIFQPHRYSRVHFLLDEFKDAFKDVDKVI 393

Query: 415 VTDDNPRSEDPE-KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I +EI+  H     IE     + I+  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEILKEHINHNNIEVMTEWKDIKRYVSRVKKDSTYIFMGAGD 451


>gi|227504694|ref|ZP_03934743.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
 gi|227198704|gb|EEI78752.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
          Length = 484

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 156/430 (36%), Gaps = 61/430 (14%)

Query: 70  AIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD         +  P++   +      L A  + G      + + GT GK
Sbjct: 73  VVVTSFAAIPQDNPELAGARAAGIPVIRRSD------LLAELMEGHQ---QILLAGTHGK 123

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q++G   SF IG     +                    ++  +      
Sbjct: 124 TSTTSMTVTAMQQAGLDPSFAIGGQLNRAGTN-----------------AHAGTGAAFVA 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + S   L ++            TN+  DH+D+    +AY+      F + + +    +
Sbjct: 167 EADESDASLLRY-----SPTVAVITNVEPDHLDFFHNAEAYYKV-FDDFADRIEESGYLV 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-----------GKFIHLKKVCAIHNKQQVTIS 294
           +  +D ++ +   RA   G +VL  G                +  +KV  I  + +V ++
Sbjct: 221 VCLEDDHAAQTGLRALERGIQVLGYGSAEAGEKYPSIPLAAEVLEEKVSVIGMQVRVRVA 280

Query: 295 VEG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + G   ++  +   +PG   V N+L A       G + + + E L     V  RFEF GT
Sbjct: 281 LPGAQSQELSYELQIPGHHMVLNSLAALVSGGLAGGELSELAEGLTDFTGVRRRFEFRGT 340

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-----TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            S+  R++ DYAH    +  +L   R          R+I  F         +       A
Sbjct: 341 ESQ-VRVFDDYAHHPTEVTAVLTAARQKVEAEGKGARVIACFQPHLYSRTMEFDKEFAQA 399

Query: 407 LDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           L LAD A+V D     E P +     I  + +      I + N  EA +  + ++   DV
Sbjct: 400 LALADAAVVLDIYGAREQPVEGITSRIITDKMPEDMKVIFEPNFSEAAQDVVSLVQPGDV 459

Query: 462 LVVAGKGHET 471
           ++  G G  T
Sbjct: 460 VLTIGAGSVT 469


>gi|50842246|ref|YP_055473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
 gi|59798222|sp|Q6A9Q1|MURC_PROAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50839848|gb|AAT82515.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
          Length = 471

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 154/431 (35%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH   P  +A GA  +VVSSA         IR + P LV  +          +  A+ + 
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALML 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     +++ GT GK++    V  +   +G                 D      SP+  
Sbjct: 114 GR---EGVSIAGTHGKTTTTGMVATMLDCAGA----------------DPSYVIGSPLAA 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L       V  + S     Q+    +       TN+  DH+D   T QAYF+  
Sbjct: 155 TGMSSHLGGGEAFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNK 288
           + +     P+    +  ADD  + E+  R  +    RV++ G  +   + L  +      
Sbjct: 210 VSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVVTYGESEQAEVRLVDLDLNGTT 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+            +PG + + NA  A  +   +GI    +L  +        RF+ 
Sbjct: 268 ASATLVYGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQL 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           VG  +    ++ DYAH    L   L   R +    GR+I  F                 A
Sbjct: 328 VGRVAD-VSVFDDYAHHPTELRATLGAARRVVTGQGRVIACFQPHLFSRTRDFAGEFGSA 386

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD  IV+D  P  EDP      E +   +I          ++ +      E +   D
Sbjct: 387 LTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGD 446

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 447 LVITLGAGDVT 457


>gi|291523761|emb|CBK89348.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale DSM
           17629]
          Length = 459

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 139/409 (33%), Gaps = 38/409 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           ++S   L  ++A I  + P            L  + L G+  +N    +AV GT GK++ 
Sbjct: 66  ITSGIDLVVYTAAIHESNPEFAAAKAAGIPMLTRAELLGQIMDNYDYSIAVAGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I   +            I S    N     S  ++++A  Y +S          
Sbjct: 126 TSMISEILLAAQTDPTI--SVGGILSSIHGNLRVGDSEYFISEACEYTNSF--------- 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                        +       N+  +H+D+ +      ++        L   +  I    
Sbjct: 175 ----------LNFRPRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEI 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPL 306
           D+Y + V         ++++ G+  K+    +     +K   + +   +    FD    +
Sbjct: 225 DSYEEIVA----GLPQKIITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  L   +G+D   +L  L+K      RF++ G    G  I  DYAH  
Sbjct: 281 PGAHNVSNALAAIALSTTLGLDEESILTGLDKFGGADRRFQYKG-KVNGVTIIDDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
             +   L   +     R+++ F                  L +AD+ ++ D     E   
Sbjct: 340 TEIRATLTAAQKYPHDRLVLCFQPHTYSRTKAFLNDFADVLSMADVVVLADIYAAREQNT 399

Query: 426 -----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                + I   ++          +  E  +   E     D+L+  G G+
Sbjct: 400 YGISSKDILDLLLEKGVNAHYFPSFEEIEKFLSENCVNGDLLITMGAGN 448


>gi|219685635|ref|ZP_03540450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
 gi|219672823|gb|EED29847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
          Length = 463

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 141/400 (35%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQAG----WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ ++  S DSR I        ++ A  GNK DG  F+   I  G +  + +  +  +  
Sbjct: 25  EKVVSFYSLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  +     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+G  H+   +  Q+    K ++  + +      +    + Y   + KRA 
Sbjct: 192 LKPEIVIITNIGYAHMQAFKELQSIAFEKSKIIGKNIE---IFVANEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + +++K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFESLNIKSFSFLEGKFSYDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y    +S   +   I  + 
Sbjct: 307 ALFLGMREKEIREGLVETAFQKGRAEILTKN--GYLILNDSYNGNMDSFMALKNMILDLD 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
             G+  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQGKKFMVLGSFKELGEFAYKTHKDLIKEAVSMNFDKIFL 404


>gi|302554927|ref|ZP_07307269.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472545|gb|EFL35638.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 463

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 149/430 (34%), Gaps = 41/430 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    + +A  A  +VVSSA    +      +   I VV  +   L+   + L
Sbjct: 54  GATVHIGH--AAEHLADDASCVVVSSAIRQDNPELARAAELGIPVVHRS-DALAALMTGL 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                   +AV GT GK++  S +       GLS           S+A    L  P    
Sbjct: 111 ------RPIAVAGTHGKTTTTSMLAVSLSALGLSP----------SYAIGGDLDAPGSNA 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L                 + S H                  N+  DH   + +    + +
Sbjct: 155 LHGEGEIFV---AEADESDRSFHKY--------APEVAIVLNVELDHHANYASMDEIYES 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNK 288
               F + +      +I AD   ++E+ +R      RV++ G      + +  V     K
Sbjct: 204 -FETFVDRVTPGGTLVISADHEGARELTRRVAGRDVRVVTYGESQDAGVRVLSVVPQGLK 262

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +VT+ ++G++  F   +PG    +NA+ A    +A+GI +  +   L     V  R + 
Sbjct: 263 SEVTVVLDGEELTFTVSVPGRHYAHNAVAALAAGVALGIPAEELAPALAAYTGVKRRLQL 322

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIAL 407
            G  + G ++   YAH    +   L+ +R       I VVF         +       AL
Sbjct: 323 KGEAA-GVQVIDSYAHHPTEMTADLEAMRAAAGDSRILVVFQPHLFSRTQELGKEMGQAL 381

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            LAD ++V D  P  EDP      E I               ++ +       M    D+
Sbjct: 382 SLADASVVLDIYPAREDPIPGVTSELIIDAARAAGADVTPVHDKADVPSAIAGMAKPGDL 441

Query: 462 LVVAGKGHET 471
           ++  G G  T
Sbjct: 442 VLTMGAGDVT 451


>gi|262276877|ref|ZP_06054670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
 gi|262223980|gb|EEY74439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
          Length = 443

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 142/380 (37%), Gaps = 35/380 (9%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR ++   +F+ I G   DGH +    + +    I++    S+  +   ++++  ++ 
Sbjct: 16  IDSRLVKENSVFLCIKGPNNDGHKYAKLVLDRFKRTIIICEKNSI--YLKNLKNSNRVIF 73

Query: 95  VDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-------SFQ 146
            ++T+ FL   A  + Y  + +N + +TG+SGK+S+   +  +  +   S       +  
Sbjct: 74  CNSTKDFLINLARIKRYLLNSKNFIGITGSSGKTSLKDLLFTVLNKYKKSYKSQKSYNNN 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           IG   T+ +   ++                          +  ++ G      + +K   
Sbjct: 134 IGLPYTLVNQNINSEFNIYE--------------------LGMNNFGEIDSLSNILKPNL 173

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  H+    + +    AK  + +  + K+   I+  D  +  ++ K +     +
Sbjct: 174 AIITNIGEAHLGNLGSIKNIAKAKAEIIKN-ITKQGTIILNHDCKFFNQLKKISKKNKIK 232

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VLS G   K     KV +++   ++ I +    F           + N LV   +     
Sbjct: 233 VLSFGSTSKATVSYKVISLN---EIEIKLNNLKFKLKLNDINPNMINNMLVCILVLSFFK 289

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385
           ++      +  K+    GR   V        I   Y    +SL+  +     + T  + I
Sbjct: 290 LNIRKSKNYFNKIKNTRGRGNIVKFRKEIIIIDDSYNSNPSSLKSSINQFEKLSTKKKKI 349

Query: 386 VVFGCGGDRDQGKRPIMGKI 405
           +V G   +  +  +   G+I
Sbjct: 350 LVIGDMLELGKFSKKKHGEI 369


>gi|207108798|ref|ZP_03242960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 207

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 12/187 (6%)

Query: 302 FLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
              PL G + +YN L    G+ +   +    +   LE  + V GR E V +      + V
Sbjct: 29  IHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSK---PLVVV 85

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AHT++ ++ + +   +  + +I  +FG GGDRD+ KRP MG IA   A   I+T DNP
Sbjct: 86  DFAHTTDGMQQVFE---SFKNQKITALFGAGGDRDKTKRPKMGAIASCYAHQIILTSDNP 142

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ GKG E   I  +
Sbjct: 143 RSENEEDIIKDILKGINDSSKVVIEKDRKKAILNALENLKDDEVLLILGKGDENTQIFKD 202

Query: 478 GEKKMSV 484
             K    
Sbjct: 203 --KTYFF 207


>gi|254375208|ref|ZP_04990688.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
 gi|151572926|gb|EDN38580.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
          Length = 451

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 128/362 (35%), Gaps = 32/362 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT GK++ +S +  +  +                   D   +      +  A S +
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQL------------------DKHSSFVVGGVVKYADSNI 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EA            +       TN+  DH+  +      +   +  F + 
Sbjct: 148 QVNGTDKLVIEADESDAS---FLFLSPQVVIITNIDLDHMATYNNS---YQTLLENFTDF 201

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + KES   IY   DD   ++++ + + +   V S G+     + +     I       I 
Sbjct: 202 VSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIR 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN 352
            +G D  F   LPG++ V NA      C+ +G     +   L K+  V  RF+      +
Sbjct: 262 YKGDDLSFKLQLPGKYNVQNATACIIACLDLGFKYEDIHNALIKVTGVARRFDLYTKVIS 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                +  DY H    +   +  +R    + +II VF                 AL LAD
Sbjct: 322 GHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPKALSLAD 381

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+       E         +I  G+ G++       AI    ++ N+  V+++ G G 
Sbjct: 382 QLILLPTYSAGEQIIKGAESQDIAKGLSGYLLADGFDHAIYFLEKLANENTVILIQGAGD 441

Query: 470 ET 471
            T
Sbjct: 442 VT 443


>gi|91785292|ref|YP_560498.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
 gi|123168040|sp|Q13TZ3|MURC_BURXL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91689246|gb|ABE32446.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
          Length = 467

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 137/429 (31%), Gaps = 51/429 (11%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A     GA A+VVS+A    +       +  I +V      L+       G      
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVM-LAELMRLKQG------ 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  +    GL      PT  I                  + +S  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLISAG 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++  +       +           +  +    TN+  DH+D +    A        F   
Sbjct: 147 ANARLGTGDFIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISV 295
           LP    A++  DD   KE++         ++  G+          V A   K   T +  
Sbjct: 207 LPFYGIAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVQARDGKMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---- 351
           +    D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G     
Sbjct: 264 DAAPLDIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVF 323

Query: 352 ----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
                +    +  DY H    +   +   R    GR +V+ F                  
Sbjct: 324 SEGSTNGAYTLVDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKV 383

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQ 459
           L   D  ++T+     E P        +   +           + ++ +  A+  ++   
Sbjct: 384 LSTVDALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDG 443

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 444 DVVITMGAG 452


>gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4]
 gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4]
          Length = 819

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 154/427 (36%), Gaps = 46/427 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRH----IQAGWIFVAIVGNKEDG 56
           MKL         ++   +          +IN + +DSR     ++   +F AI   + +G
Sbjct: 1   MKLN--------KIAQIVGANDSNVPSVEINWLLTDSRSLSFPVE--SLFFAIHTARNNG 50

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H +I +   Q     VVS             ++   L V+++ K L   A          
Sbjct: 51  HNYIAELYQQNLRYFVVSE----MHPEFEKMTDAVFLKVEDSLKALQALAVAHRNAFDIP 106

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK+ V  ++ Q+               T S  + ++++  P  ++   ALS 
Sbjct: 107 VIGITGSNGKTVVKEWLYQLLHT--------DYVITRSPRSYNSQIGVPLSVW---ALSE 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +  G+    +  S     +     I+   G FTNLG  H +     +     K++LF++
Sbjct: 156 STQLGIFEAGI--SEPHEMKRLQPIIRPTIGIFTNLGDAHQENFSGLKQKCEEKLQLFDQ 213

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
                S  ++Y  D    E+            S G   K    + +     +  +V +  
Sbjct: 214 -----SEVLVYCSDNKLVEISIAQSAFKGVFFSWGKSDKATVQIVQKEKTVSSTKVVLKY 268

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +     P   +  + NAL    + + +G+ +A + + +  L  V  R E V    R 
Sbjct: 269 NAVESSVTIPFTDDASIENALQCVAVMLYLGLKTAEIAKRILLLEAVAMRLE-VKEGVRD 327

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTIT-----SGRIIV--VFGCGGDRDQGKRPIMGKIAL 407
             I  D Y    NSL + L  +         S  +I+  +   G   D+  + + G +  
Sbjct: 328 CLIINDSYNSDLNSLSIALDFLNQQATAKKLSKTLILSDILQSGQTSDELYKTVSGLVHN 387

Query: 408 DLADIAI 414
                 I
Sbjct: 388 KNVQRII 394


>gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
          Length = 821

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 145/373 (38%), Gaps = 28/373 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     +  +  ++ + +DSR +      +F A+     DGH +I        
Sbjct: 5   IKEIAGIIGADAQKLYDAPVSILLTDSRRLSFPEQSLFFALQTKTNDGHNYIQGLYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS+   L +F +   +N   LVV +T K L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVST--FLPEFESMPEAN--FLVVKDTLKALQKLAAHHRKRFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+      + F I            +  +  S + +  ++  +S +    +   
Sbjct: 121 VKEFLYQLL----HNEFNI----------VRSPRSYNSQLGVPLSVWQMSDKNTLGIFEA 166

Query: 189 ASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL   I    G  TN+G  H +   +       K+ LF      +  AIIY
Sbjct: 167 GISQPDEMERLQPIIAPTIGVITNIGEAHQENFISSTQKCLEKLTLF-----NDCEAIIY 221

Query: 248 -ADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DDA+    ++ A  +      S       ++++ +  + ++  +  ++ G D  +  P
Sbjct: 222 DGDDAFIANCIESACLSHKAITWSRTDSEAPLYIESIKKLDSETIIRCTLLGFDRTYTIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +  + NA+    + + +   S   +E  ++L  V  R +     +    I   Y   
Sbjct: 282 FTDDASIENAIHCMAVMLYLKPTSVNDIEKFKRLEPVAMRLDVKQGINNCLLINDTYNSD 341

Query: 366 SNSLEMILKNIRT 378
            NSL++ L   ++
Sbjct: 342 INSLDIALDFQQS 354


>gi|159897146|ref|YP_001543393.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890185|gb|ABX03265.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 894

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 149/399 (37%), Gaps = 43/399 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            + A+TGT+GK++ A     I + +G   + +G TST   +    R+          A  
Sbjct: 492 PLAALTGTNGKTTTARMTAHILKMAG---YHVGMTSTDGIYIDGERVLRGDMTGPKSARM 548

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LF 234
            L    V    +E +  G+ +  L   ++  G+  N+  DH+           AK++ L 
Sbjct: 549 VLRDPTVDAAVLETARGGILREGLGYDEVDVGAILNISADHLGLRGIDTLEEMAKVKSLI 608

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-------- 286
            E++ ++  A++ ADD    +++ R      +     +      +++   +         
Sbjct: 609 IEVIKRDGWAVLNADDPLVAKLVARTR---AKPFYFSFDPANPLVREQVQVGGRAIVVEK 665

Query: 287 --NKQQVTISVEGKDFDFLFPLPG--------EFQVYNALVAAGLCIAIGIDSALVLEHL 336
             N   VT+  +G+    L+            +F V NAL AA L  ++GI    + + L
Sbjct: 666 GVNGDMVTLYDKGRHIPLLWTHLIPATLEGRAKFNVANALAAAALAYSLGISIENIRQGL 725

Query: 337 EKLHVVPGRF--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGG 392
                   +        +    R+ +DY H   ++  ++  +R +      I V+   G 
Sbjct: 726 RTFTTSFYQTPGRLNVFDEHPFRVILDYGHNPAAVSNLIDVVRQLPREGKAICVISVPGD 785

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNP-----RSEDPEKIRAEII-HGIPGFIEKGNR- 445
            R+   R I   +   + D  I+ +D         E P  IR  +   G         R 
Sbjct: 786 RREVDAREIGRLLGAGVFDQIIIKEDTSLRGRKEGEMPGYIREGLAEAGFAESNIHYTRH 845

Query: 446 -IEAIRTAIEMLNKQDVLVVAGKGHETV----HIVTNGE 479
             EAI  A++   + D+++V     E       I+  G+
Sbjct: 846 EREAIAMALDGAQRGDLVMVF--ADEPTEAWKQIIYWGK 882


>gi|317055027|ref|YP_004103494.1| UDP-N-acetylmuramate/alanine ligase [Ruminococcus albus 7]
 gi|315447296|gb|ADU20860.1| UDP-N-acetylmuramate/alanine ligase [Ruminococcus albus 7]
          Length = 477

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 149/433 (34%), Gaps = 55/433 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+ Q      GAE I+ ++A    +        +  +V +     L +          EN
Sbjct: 62  FLGQRAENIEGAELIIYTAAIMADNPELIAAKESGAIVCERA-DILGVITGWY-----EN 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            L V GT GK++ +S + QI   +G     +      S         +            
Sbjct: 116 ALCVCGTHGKTTTSSMLTQIFVDAGEDVSCVIGGKLPSIGGSGRAGKSKD---------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +   +       H L  H             N+  DH++Y +  +    +    F +
Sbjct: 166 MVCEACEYQ-----DHFLKLH------PDCAIILNVDADHLEYFKNIENIIKS-FHTFAD 213

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
           +    S  I   DDA +++ ++        ++S G+ +      + +       + T   
Sbjct: 214 M--ASSAVIYNGDDANTRKALEGISGK--ELISFGWNKANDYSAEIISKKGLVTRFTAFF 269

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+   +    +PG   V NAL A       GI      + L   H    RF+ +    R
Sbjct: 270 KGESLGEIEINVPGNHNVLNALAALAAARYSGISFEAAAKGLSSFHGAIRRFQLID-KVR 328

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  I  DYAH    +E+ L+  +++   R+  VF                 AL++ADI++
Sbjct: 329 GLTIVDDYAHHPKEIEVTLRAAKSLDFKRVWAVFQPFTYSRTEILMDDFARALEIADISV 388

Query: 415 VTDD-NPRSEDPEKIRAEIIH-------GIPGFIEKGNRIEA----------IRTAIEML 456
           +TD    R ++   I  E++              E  ++  A          I   ++  
Sbjct: 389 ITDIMGSREKNDHGIYTEMLGEKTRNAVWFDTPHEVVDKQTAEQKEKNFDECIDYIMKNA 448

Query: 457 NKQDVLVVAGKGH 469
              D+L+  G G 
Sbjct: 449 EDGDILITFGCGD 461


>gi|193213214|ref|YP_001999167.1| UDP-N-acetylmuramate [Chlorobaculum parvum NCIB 8327]
 gi|193086691|gb|ACF11967.1| UDP-N-acetylmuramate [Chlorobaculum parvum NCIB 8327]
          Length = 474

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 124/384 (32%), Gaps = 41/384 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNR 161
           L    L G+H   ++A  GT GK++  S    + +  G     +  G         + + 
Sbjct: 96  LVRRELIGRHTSIVVA--GTHGKTTTTSLAAWLLEAGGFLPGFLIGGIPENFGDGCRPSG 153

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDY 219
                          LS  G      +         R   +  +       N+  DH D 
Sbjct: 154 ---------------LSEPGFFVTEGDEYDSAFFDKRSKFLHYRPDIAIINNVEFDHADI 198

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIH 278
             +      +   L   L+P     I+  DD  S EV  +A    CRV + G  G     
Sbjct: 199 FDSLDDIKKSFCLLV-NLVPSSGLLIVNGDDPNSMEVAAKA---FCRVETFGMNGTADWT 254

Query: 279 LKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              +         T+   G+       PL G + V NAL A    I  G+    + + L 
Sbjct: 255 ATDITTDAESTVFTVVHNGEAMGRVSVPLFGNYNVMNALAATAAAIRAGVSFESITKGLA 314

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           K      R E VG  + G  +  D+AH   ++ + L  I     GR IV           
Sbjct: 315 KFKRPKRRMELVGEYAGGVTLIEDFAHHPTAVRLTLGAIAEHYPGRRIVACFEPRSNTTT 374

Query: 398 KRPIMGKI--ALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEA------ 448
           +     ++    D A + ++   N P    PEK R +          KG R+ A      
Sbjct: 375 RNIFQHELTECFDDASVVVLGRVNRPDRYAPEK-RLDAAQLCHELEAKGKRVFAAGDDDY 433

Query: 449 ----IRTAIEMLNKQDVLVVAGKG 468
               ++         DV+V+   G
Sbjct: 434 PNDIVQFIKAEQQPGDVVVLLSNG 457


>gi|240144337|ref|ZP_04742938.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|257203680|gb|EEV01965.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|291540809|emb|CBL13920.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           XB6B4]
          Length = 459

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 136/418 (32%), Gaps = 42/418 (10%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVAS 131
               L  ++A IR + P       R    L  + L G+  +N    +AV GT GK++  S
Sbjct: 68  DGIDLIVYTAAIREDNPEYAAAKERSIPMLSRAELLGQIMDNYNNSIAVAGTHGKTTTTS 127

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + QI   +            I    + N     S I++++A  Y +S    +       
Sbjct: 128 MISQILLAAKADPTI--SVGGILKAIEGNIKVGKSDIFVSEACEYTNSFLHFY------- 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                              N+  +H+D+ +  Q   N+  R F     K+   II  +  
Sbjct: 179 ------------PRYSVILNVEAEHLDFFKDIQDIRNS-FRKFAGNTKKDGAIIINGEIE 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPG 308
              E+         +V++ G      +                 +       D    +PG
Sbjct: 226 NYTEL---TSGLDPQVITFGLNDSCDYYPSDITFDETACASFTAMHHGTPVMDVKLHVPG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL A  L + +GI +  +L  L        RF++ G    G  I  DYAH    
Sbjct: 283 MHNVSNALAAIALSLDLGISTDAILAGLSAFGGADRRFQYKGC-VDGVTIIDDYAHHPTE 341

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           +   L   +     R+++ F                  L +AD+ ++ D     E     
Sbjct: 342 IRATLTAAKNYPHKRLVLAFQPHTYSRTKAFLDDFADVLSMADVVVLADIYAAREKNTYD 401

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                I A++           +  E  +  ++     D+L+  G G     IV  GE 
Sbjct: 402 ISSRDILAKLKEKGTECYYFPSFEEIEKFLLKNCINGDLLITMGAGD----IVNVGEH 455


>gi|170718784|ref|YP_001783967.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 2336]
 gi|189028994|sp|B0US68|MURC_HAES2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168826913|gb|ACA32284.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus somnus 2336]
          Length = 476

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 137/415 (33%), Gaps = 42/415 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VVSSA    +          I V+    +   + A  +  +H    +A+ GT GK
Sbjct: 77  GASVVVVSSAIKGDNIEVITAHEKRIPVI----QRAQMLAEIMRFRHG---IAIAGTHGK 129

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V  I  ++GL    +      S+        +         ++       + + 
Sbjct: 130 TTTTAMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGCS------RYLIAEADESDASFL- 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAI 245
                          ++ +    TN+  +H++ YH   +      +  F   LP    ++
Sbjct: 183 --------------HLQPMVSVVTNIEPEHMETYHGDFEEMKQTYVN-FLRNLPFYGLSV 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD    E+  +             +  +                ++  G+  D L  
Sbjct: 228 MCADDPVLMELSSQV-GRQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERIDVLLN 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDY 362
           +PG+    NA  A  +    GI++  +L  L +      RF+ +G     +    +  DY
Sbjct: 287 VPGKHNALNATAALTVAKEEGIENEAILTALAEFQGAGRRFDQLGQFIRPNGKVMLVDDY 346

Query: 363 AHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H    + + ++  R     + IV +F                  L   D+ I+ D    
Sbjct: 347 GHHPTEVNVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDVLIMLDVYAA 406

Query: 422 SE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E      D   +   I + G    I   +  +      +++   D+++  G G+
Sbjct: 407 GEQAIAGADSRSLCRSIRNLGKVDPILVSDHKQLAEIVDQVIQDGDLILAQGAGN 461


>gi|307731071|ref|YP_003908295.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
 gi|307585606|gb|ADN59004.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
          Length = 467

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 138/431 (32%), Gaps = 55/431 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A     GA A+VVS+A    +       +  I +V      L+       G      
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVM-LAELMRLKQG------ 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  +    GL      PT  I                  + +S  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLISAG 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++  +       +           +  +    TN+  DH+D +    A        F   
Sbjct: 147 ANARLGTGDFIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISV 295
           LP    A++  DD   KE++         ++  G+          V A   K   T +  
Sbjct: 207 LPFYGIAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVEARDGKMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---- 351
           +    D    LPGE  V NAL A  +   + +  A +   L   + V  RF+  G     
Sbjct: 264 DAAPLDITLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVI 323

Query: 352 ---NSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
               +RG   +  DY H    +   +   R    GR +V+ F                  
Sbjct: 324 ADGQTRGAYTLVDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKV 383

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR---------TAIEMLN 457
           L   D  ++T+     E P  I A     +   +    ++E +              ++ 
Sbjct: 384 LSTVDALVLTEVYSAGEAP--IVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAIVR 441

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 442 DGDVVITMGAG 452


>gi|301630395|ref|XP_002944307.1| PREDICTED: UDP-N-acetylmuramate--L-alanine ligase-like [Xenopus
           (Silurana) tropicalis]
          Length = 480

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 96/433 (22%), Positives = 147/433 (33%), Gaps = 54/433 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  QGA+A+V S+A    +          I VV      L+       G    
Sbjct: 56  GHD---AAQVQGADAVVTSTAVQGDNPEVLAARARKIPVVPRALM-LAELMRLRQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   +GL      PT  I                L  A +
Sbjct: 108 --VAIAGTHGKTTTTSLVTSVLAEAGLD-----PTFVIGGR-------------LNSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA     D   L+ +  +    TN+  DH++ +             F 
Sbjct: 148 NARLGQGEYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFGRLKRAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
             +P    AI+  D+   +E++         V S G+          V A   +   T+ 
Sbjct: 205 HRMPFYGAAILCVDNPGVREILADVARP---VTSYGFGADAQVRAVHVRADAGRMHFTVQ 261

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D +    L GE  V NAL A  + + +GI  A VL  L     V  RF+  G
Sbjct: 262 RSNGVTLPDLEVELNLAGEHNVLNALAAIAVAVELGIPDAAVLRALAGFSGVGRRFQRYG 321

Query: 351 -----TNSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIM 402
                  + GG  ++  DY H    +   L   R    GR +V+ F              
Sbjct: 322 DQPARAENGGGHYQLIEDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYSRTRDCFED 381

Query: 403 GKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               L  AD+ ++T+     E P          RA  + G    I   +  E  R  ++ 
Sbjct: 382 FVKILGQADVVLLTEVYAAGEAPIVAADGRSLARALRVAGHVEPIFIDDVAELPRAIVQN 441

Query: 456 LNKQDVLVVAGKG 468
               DV++  G G
Sbjct: 442 ARAHDVVLCMGAG 454


>gi|114773356|ref|ZP_01450560.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
 gi|114546290|gb|EAU49201.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
          Length = 470

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 150/420 (35%), Gaps = 51/420 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+      +V+SSA    +          + +V        L          ++ +A+ 
Sbjct: 73  EAVE----VVVISSAIKAGNKELDHARALGLPIVRRAEMLAELMRL-------KSNIAIA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  + V  +    G+    I     I ++  + R+ T   + +    S      
Sbjct: 122 GTHGKTTTTTLVATLLDHGGIDPTVING-GIIHAYGSNARMGTGDWMVVEADESD----- 175

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                             + +       TN+  +H++++ +     +A    F   +P  
Sbjct: 176 ---------------GTFNKLPATIAVVTNIDPEHMEHYGSFDNLKDAFYN-FVSNIPFY 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF- 300
             AI   D    + ++ R  +          Q   +  + +          I+++ ++  
Sbjct: 220 GLAICNTDHPEVQSLVGRVDDRRIVTYGFNKQAD-VRAENLKFKKGCAYFDIALQSENAF 278

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D + P+PG++ V NAL A  +   +G+D+  +   L +   V  RF  VG    G  I
Sbjct: 279 IKDVMLPMPGDYNVSNALAAVAVSRHLGMDAKQIRNALLEFKGVKRRFTHVG-EINGVTI 337

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DYAH    +  +L   +  TSG++I V                  + + AD+  +TD 
Sbjct: 338 IDDYAHHPVEISAVLSAAKQATSGKVIAVHQPHRYSRLDNLFEDFCNSFNDADVVGITDV 397

Query: 419 NPRSEDPEK--IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E+P K   R  ++ G+           +++ +     +  +E     D+LV  G G
Sbjct: 398 YSAGEEPIKNRNRDSLVAGLKARGHRNAFAVVDEADLK---KFFLENCKNGDLLVCLGAG 454


>gi|261867481|ref|YP_003255403.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412813|gb|ACX82184.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 476

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/431 (17%), Positives = 132/431 (30%), Gaps = 46/431 (10%)

Query: 51  GNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           G K     FI        GA  +V+SSA    +          I V+   +  L+     
Sbjct: 63  GAKV----FIGHQAENIVGASVVVISSAIHGDNPEVMAAKEARIPVIQRAQM-LAELMRF 117

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +G      +AV GT GK++  + V  I   +GL    +      S+    +   +    
Sbjct: 118 RHG------IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKSAGTNAHLGCS---- 167

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                ++       + +                ++ +    TN+  DH+D +        
Sbjct: 168 --RYLIAEADESDASFL---------------HLQPMISIVTNIEPDHMDTYHGDFDEMK 210

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                F   LP    A++ ADD    E++                  +            
Sbjct: 211 QTYVNFLHNLPFYGLAVLCADDEVLMELVP-LVGRQVITYGFSENADYRIEDYQQTGFQG 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               I   G+  D L  +PG     NA  A  +    GI +  +L  L        RF+ 
Sbjct: 270 HYTVICPNGERIDVLLNVPGRHNALNATAALVVAKEEGIKNDAILAALADFQGAGRRFDQ 329

Query: 349 VG---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGK 404
           +G     +    +  DY H    + + ++  R     + IV +F                
Sbjct: 330 LGQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFV 389

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLN 457
             L   D  I+ D  P  E P      + +   I + G    I   +  +      +++ 
Sbjct: 390 QVLSQVDALIMLDVYPAGEAPIVGADSKALCRSIRNLGKVDPILVSDTEQLGEVLDQIIQ 449

Query: 458 KQDVLVVAGKG 468
             D+++  G G
Sbjct: 450 DGDLILAQGAG 460


>gi|119469215|ref|ZP_01612199.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
 gi|119447467|gb|EAW28735.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
          Length = 483

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 147/449 (32%), Gaps = 54/449 (12%)

Query: 48  AIVGNKEDGHLFIPQA-----IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDN 97
           A  G +  G      A     I  GAE  +     +++D      S+ I    P ++   
Sbjct: 39  AFEGYRITGSDIAHSAMTDRLIKAGAEVFIGHHENNVKDANVVVVSSAIDETNPEIIAAK 98

Query: 98  TRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             +        + A  +  +H    +A+ GT GK++  S +  I  ++GL    I     
Sbjct: 99  AARIPVVRRAEMLAELMRFRHG---IAIAGTHGKTTTTSLIASIYAQAGLDPTFI-IGGL 154

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           ++S   + ++           ++       + +                ++ +    TN+
Sbjct: 155 LNSAGSNAKVGKSD-----FLIAEADESDASFL---------------HLQPMVSVITNI 194

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH+D +             F   LP    A++  D   + E++ R       +++ G 
Sbjct: 195 EEDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVAAELIPRFGRP---IITYGE 251

Query: 273 Q-GKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                  +       N    T++  +G+       +PG+    NA  A  +     I + 
Sbjct: 252 SPTADYRMSDFSQSANTCTFTVTNKQGECLTATLNMPGKHNALNATAAIAVAKDQNIANQ 311

Query: 331 LVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIV 386
            +LE L+K   +  RF+  G          +  DY H  + +   +  +R      R+++
Sbjct: 312 AILEALQKFEGIGRRFQQYGEFENERGNIMLVDDYGHHPSEVAATIAAVREGWPDKRLVM 371

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFI 440
           ++                  L   D  ++ D     E+P      + +   +       +
Sbjct: 372 IYQPHRYSRTRDLYEDFVKVLADVDQLLLLDVYGAGEEPIVGADSKSLCRSLRQRGKEPL 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              +  E      + L   D+++  G G+
Sbjct: 432 HVASSKELAGVLADNLQNNDLVLTQGAGN 460


>gi|226328326|ref|ZP_03803844.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
 gi|225203059|gb|EEG85413.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
          Length = 487

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 146/424 (34%), Gaps = 53/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  +VVS+A S ++          I V+    + L+      +G      +A+ GT G
Sbjct: 77  RGASVVVVSTAISAENPEIIAAREARIPVIRRA-EMLAELMRYRHG------VAIAGTHG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I  ++GL    +      S+        +         ++       + +
Sbjct: 130 KTTTTAMISNIYAQAGLDPTFVNGGLVKSAGTHARLGCS------RYLIAEADESDASFL 183

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +             F   LP    A+
Sbjct: 184 ---------------HLQPMVAVVTNIEADHMDTYHGNFDNLKETFITFLHNLPFYGRAV 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           +  DD   + ++      G  + + G+ +   + +        +   TIS EG  D   +
Sbjct: 229 MCLDDDVIRSII---PKVGRYITTYGFSEDADVRITHYEQKGAQGFFTISREGMPDLQVV 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR 357
              PG     NA  A  +    GI    +L  L        RF+F+G       N + G 
Sbjct: 286 LNAPGRHNALNATAAVAVATEEGIADEHILAALLSFQGTGRRFDFLGNYGLEHVNGQEGE 345

Query: 358 I--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +    DY H    ++  +K  R      R++++F                  L+  DI +
Sbjct: 346 VMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYEDFATVLNQVDILL 405

Query: 415 VTDDNPRSEDP--EKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +TD     E P        +   I       P ++   + I +I   +  L   D+++V 
Sbjct: 406 LTDVYSAGEAPIAGADSRSLCRTIRQRGKLDPIWVSDVSNISSILAGV--LTDNDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|254372062|ref|ZP_04987555.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151569793|gb|EDN35447.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3549]
          Length = 451

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 128/362 (35%), Gaps = 32/362 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT GK++ +S +  +  +                   D   +      +  A S +
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQL------------------DKHSSFVVGGVVKYADSNI 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EA            +       TN+  DH+  +      +   +  F + 
Sbjct: 148 QVNGTDKLVIEADESDAS---FLFLNPQVVIITNIDLDHMATYNNS---YQTLLENFTDF 201

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + KES   IY   DD   ++++ + + +   V S G+     + +     I       I 
Sbjct: 202 VSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIR 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN 352
            +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      +
Sbjct: 262 YKGDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVIS 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                +  DY H    +   +  +R    + +II VF                 AL LAD
Sbjct: 322 GHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPKALSLAD 381

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+       E         +I+ G+ G++       AI    ++ N+  V+++ G G 
Sbjct: 382 QLILLPTYSAGEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILIQGAGD 441

Query: 470 ET 471
            T
Sbjct: 442 VT 443


>gi|21672874|ref|NP_660939.1| UDP-N-acetylmuramate-alanine ligase [Chlorobium tepidum TLS]
 gi|25453121|sp|Q8KGD5|MURC_CHLTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21645925|gb|AAM71281.1| UDP-N-acetylmuramate--alanine ligase [Chlorobium tepidum TLS]
          Length = 475

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 146/433 (33%), Gaps = 60/433 (13%)

Query: 56  GHLFIPQAIAQGAE-AIVVSSAYSLQ---DFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
           GH    QA   GA   +V SSA   +   +  A  +   P++  D   + L        G
Sbjct: 60  GH----QAENVGASDVVVYSSAVRPESNVEILAAQKLGIPVIKRD---EMLGELMRHKSG 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 + V+GT GK++  + V  +   +G S   +     +S + + + +       + 
Sbjct: 113 ------ICVSGTHGKTTTTAMVATMLLEAGQSPTVM--IGGVSDYLKGSTVVGEGKSMVI 164

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  +                      +        +L  +H+D + T     +   
Sbjct: 165 EADEYDRAF-------------------LKLTPTIAVLNSLESEHMDTYGTMDNLRDCFA 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
             F   +P     I   D    + ++ R +    R  + G  +   +   ++        
Sbjct: 206 E-FANKVPFYGRVICCVDWPEIRRIIPRLNR---RYTTFGIEEHADVMASEIEPGDGGST 261

Query: 291 VTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            T+   G+ +      +PG   V NAL A  + + IG+    ++  L +   +  RF+  
Sbjct: 262 FTVEAFGERYPGVRLNVPGRHNVLNALAAFSVGLEIGLPPERIIAGLARYSGMRRRFQVK 321

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALD 408
              + G  +  DYAH    ++  ++  R       IV VF         +       AL 
Sbjct: 322 YRGADGVLVIDDYAHHPTEVKATVRAARDGWKEHRIVAVFQPHLYSRTAEFAGEFGWALS 381

Query: 409 LADIAIVTDDNPRSEDPEK---IRAEII------HGIPG--FIEKGNRIEAIRTAI-EML 456
            AD   V    P  E  E    I  E++       G     F E+    EA+  A+ E  
Sbjct: 382 RADTVYVAGIYPSREKAEDYPGITGELVAEASRTAGAKNVWFTEEH---EALLAALQEEA 438

Query: 457 NKQDVLVVAGKGH 469
             + + +  G G 
Sbjct: 439 APETLFLFMGAGD 451


>gi|121595960|ref|YP_987856.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|222112148|ref|YP_002554412.1| UDP-N-acetylmuramate--l-alanine ligase [Acidovorax ebreus TPSY]
 gi|166222950|sp|A1WC05|MURC_ACISJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765998|sp|B9MFR1|MURC_DIAST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120608040|gb|ABM43780.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|221731592|gb|ACM34412.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax ebreus TPSY]
          Length = 477

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 123/415 (29%), Gaps = 48/415 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S+A    +          I VV      L+       G      +A+ G  GK++  
Sbjct: 68  VVTSTAVQADNPEVLAARERKIPVVPRALM-LTELMRLRKG------IAIAGAHGKTTTT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  +   +GL      PT  I                          QG   V     
Sbjct: 121 SLVASVLGEAGLD-----PTFVIGGRLNSAGTNAK------------LGQGEYIVVEADE 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S G   + L     +    TN+  DH++ +             F   +P    AI+  D+
Sbjct: 164 SDGSFLNLL----PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAILCIDN 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGK----DFDFLFP 305
              ++++       C V S G           V A+  +   T+         D   +  
Sbjct: 220 PAVRDILPLVT---CPVTSYGLSEDAEVRAVDVRAVGTQMHFTVQRRNGVTLPDLQVVLN 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVD 361
           L GE  V NAL    +   + +    +L  L     V  RF+  G           +  D
Sbjct: 277 LAGEHNVLNALAVIAVAAELNVPDDALLRALAGFTGVGRRFQRHGDLPAQGGGHFTLIED 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    +   L   R    GR +V+ F                  L  AD  ++T+   
Sbjct: 337 YGHHPVEMAATLAAARGAYPGRRLVLAFQPHRYSRTRDCFEDFVKVLGTADAVLLTEVYA 396

Query: 421 RSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E P          RA  + G    +   N  +  +         DV++  G G
Sbjct: 397 AGEAPIVAADGRSLARALRVAGTVEPVFIDNVADMPQRIAAGARDGDVVLCMGAG 451


>gi|189183854|ref|YP_001937639.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180625|dbj|BAG40405.1| UDP-N-acetylmuramate-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
          Length = 502

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 146/427 (34%), Gaps = 58/427 (13%)

Query: 66  QGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V+SSA  ++  ++ A I +  PI+   +  + L+           +  +A++G+
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAISAKIPII---SRAEMLAELMR------SKIAIAISGS 133

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I +  GL        + I+    +N+ T          ++       T
Sbjct: 134 HGKTTTTALIACIFEACGLH------PTVITGGIMNNKATNAYLGDGDYFIAEADESDAT 187

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +                I       TN+  +H+D+++      +A  R F   LP +  
Sbjct: 188 FIK---------------IPATIAVITNIDVEHLDFYKNFDNLISA-FRKFIINLPYDGF 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-- 301
           A+   DD   + ++ +  +       +  +   I    +   +      + ++  +F   
Sbjct: 232 AVACIDDITVQNLIAKITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNE 291

Query: 302 -----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P  G+  + N+L A  + + + +D  ++ +  +    +  RF  +G      
Sbjct: 292 VIITQVTLPALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNFKGIARRFTKIG-EYNNI 350

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            +  DYAH    +   +   R I     GR+I VF         +            D  
Sbjct: 351 TVIDDYAHHPAEIIATIDIARCIADKQQGRVIAVFQPHRYSRLKQLFSEFTHCFQRVDQL 410

Query: 414 IVTDDNPRSEDPEKIRAEI--IHGIPGFIEKG---------NRIEAIRTAIEMLNKQDVL 462
            ++      E      + I  ++ I  +             +  + I      +   D++
Sbjct: 411 YISQIYDAGEQETYNLSHISLVNAIKSYYHSVYVMPINNLDDLPQIIYR---QVKPYDII 467

Query: 463 VVAGKGH 469
           ++ G G 
Sbjct: 468 LLMGAGD 474


>gi|83748767|ref|ZP_00945782.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|207744400|ref|YP_002260792.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724588|gb|EAP71751.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|206595805|emb|CAQ62732.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
          Length = 483

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 138/424 (32%), Gaps = 56/424 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL    +     ++S   + RL T         ++       + ++
Sbjct: 117 TTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIVAEADESDASFLN 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A        F   LP    A++
Sbjct: 171 ---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-----SVEGKDF 300
             DD   +E++         V+  G+            A+  + + T+            
Sbjct: 216 CVDDPNVREILPFVSKP---VVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG- 355
                LPG   V NAL A  +   + +    +++ L + + V  RF+  G     + +G 
Sbjct: 273 SITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGR 332

Query: 356 GRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DY H    +   +          R+++ F                  L   D  +
Sbjct: 333 FTLIDDYGHHPVEMAATVAAARGAFPDRRLVLAFQPHRFTRTRDCFEDFIKVLGTVDGLL 392

Query: 415 VTDDNPRSEDP-------EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
           + +     E P          RA  + G   P F+E   +  +AI  A       DV++ 
Sbjct: 393 LAEVYSAGEPPIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDA---AQDNDVVIT 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|289426296|ref|ZP_06428042.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289426882|ref|ZP_06428608.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|295130334|ref|YP_003580997.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|289153461|gb|EFD02176.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289159971|gb|EFD08149.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|291375983|gb|ADD99837.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|313764734|gb|EFS36098.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA1]
 gi|313772516|gb|EFS38482.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL074PA1]
 gi|313807246|gb|EFS45733.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA2]
 gi|313809752|gb|EFS47473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA1]
 gi|313815799|gb|EFS53513.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA1]
 gi|313818292|gb|EFS56006.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA2]
 gi|313820054|gb|EFS57768.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA1]
 gi|313823137|gb|EFS60851.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA2]
 gi|313825586|gb|EFS63300.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA1]
 gi|313827825|gb|EFS65539.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA2]
 gi|313830661|gb|EFS68375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL007PA1]
 gi|313833881|gb|EFS71595.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL056PA1]
 gi|314915225|gb|EFS79056.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA4]
 gi|314918546|gb|EFS82377.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA1]
 gi|314919809|gb|EFS83640.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA3]
 gi|314925476|gb|EFS89307.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA3]
 gi|314931824|gb|EFS95655.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL067PA1]
 gi|314955980|gb|EFT00378.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA1]
 gi|314958375|gb|EFT02478.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA1]
 gi|314960273|gb|EFT04375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA2]
 gi|314968083|gb|EFT12182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA1]
 gi|314973663|gb|EFT17759.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA1]
 gi|314976256|gb|EFT20351.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL045PA1]
 gi|314983535|gb|EFT27627.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA1]
 gi|314987723|gb|EFT31814.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA2]
 gi|314990202|gb|EFT34293.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA3]
 gi|315085925|gb|EFT57901.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA3]
 gi|315096283|gb|EFT68259.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL038PA1]
 gi|315098266|gb|EFT70242.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA2]
 gi|315101043|gb|EFT73019.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA1]
 gi|315108235|gb|EFT80211.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL030PA2]
 gi|327325919|gb|EGE67709.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA2]
 gi|327332208|gb|EGE73945.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA3]
 gi|327442830|gb|EGE89484.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA2]
 gi|327446201|gb|EGE92855.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA2]
 gi|327447816|gb|EGE94470.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA1]
 gi|327451052|gb|EGE97706.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA3]
 gi|327453593|gb|EGF00248.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA2]
 gi|328753085|gb|EGF66701.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA1]
 gi|328753740|gb|EGF67356.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL020PA1]
 gi|328759170|gb|EGF72786.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA2]
 gi|328760584|gb|EGF74152.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL099PA1]
 gi|332675176|gb|AEE71992.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           266]
          Length = 471

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 154/431 (35%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH   P  +A GA  +VVSSA         IR + P LV  +          +  A+ + 
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALML 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     +++ GT GK++    V  +   +G                 D      SP+  
Sbjct: 114 GR---EGVSIAGTHGKTTTTGMVATMLDCAGA----------------DPSYVIGSPLAA 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L       V  + S     Q+    +       TN+  DH+D   T QAYF+  
Sbjct: 155 TGMSSHLGGGEAFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNK 288
           + +     P+    +  ADD  + E+  R  +    RV++ G  +   + L  +      
Sbjct: 210 VSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVVTYGESEQAEVRLVDLDLNGTT 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+            +PG + + NA  A  +   +GI    +L  +        RF+ 
Sbjct: 268 ASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQL 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           VG  +    ++ DYAH    L   L   R +    GR+I  F                 A
Sbjct: 328 VGRVAD-VSVFDDYAHHPTELRATLGAARRVVTGQGRVIACFQPHLFSRTRDFAGEFGSA 386

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD  IV+D  P  EDP      E +   +I          ++ +      E +   D
Sbjct: 387 LTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGD 446

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 447 LVITLGAGDVT 457


>gi|194336194|ref|YP_002017988.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308671|gb|ACF43371.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
          Length = 493

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 108/318 (33%), Gaps = 22/318 (6%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +     R    H  +I+ V GT GK++  S V  + +  GL    +     +        
Sbjct: 109 MPELVRRHLIAHNSSIV-VAGTHGKTTTTSLVAWLLEHGGLKPGFL-----VGG------ 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDY 219
              P    L    S  S +G      +         R   +  +       N+  DH D 
Sbjct: 157 --IPENFSLGCRASGRSEEGFFVTEGDEYDTAFFDKRSKFLLYRPDIAIINNIEFDHADI 214

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIH 278
             + +    +  RLF  L+P     ++  DD  + EV  RA    CRV   G  +     
Sbjct: 215 FDSLEDIKRS-FRLFVNLIPGNGTLLVNGDDKVALEVASRA---FCRVERFGLTRESEWS 270

Query: 279 LKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              + A        +  +G        PL G + + N+L A       G+    ++  + 
Sbjct: 271 ACNLSADSEASTFDLLYQGTLLGSIRIPLFGNYNIMNSLAAIAAATHSGLSVEAIIRAMP 330

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                  R E VGT +    +  D+AH   ++ + L+ +  + +GR I+           
Sbjct: 331 LFKRPKRRMEIVGTYAHNITLVEDFAHHPTAIRVTLEALGELYTGRRIIACFEPRSNTTT 390

Query: 398 KRPIMGKIALDLADIAIV 415
           +     ++A      +IV
Sbjct: 391 RNIFQQELAECFGPASIV 408


>gi|291528773|emb|CBK94359.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale M104/1]
          Length = 459

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 139/409 (33%), Gaps = 38/409 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           ++S   L  ++A I  + P            L  + L G+  +N    +AV GT GK++ 
Sbjct: 66  ITSGIDLVVYTAAIHESNPEFAAAKAAGIPMLTRAELLGQIMDNYDYSIAVAGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I   +            I S    N     S  ++++A  Y +S          
Sbjct: 126 TSMISEILLAAQTDPTI--SVGGILSSIHGNLRVGDSEYFISEACEYTNSF--------- 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                        +       N+  +H+D+ +      ++        L   +  I    
Sbjct: 175 ----------LNFRPRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEI 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPL 306
           D Y + V         ++++ G+  K+    +     +K   + +   +    FD    +
Sbjct: 225 DRYEEIVA----GLPQKIITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  L   +G+D+  +L  L+K      RF++ G    G  I  DYAH  
Sbjct: 281 PGAHNVSNALAAIALSTTLGLDTESILTGLDKFGGADRRFQYKG-KVNGVTIIDDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
             +   L   +     R+++ F                  L +AD+ ++ D     E   
Sbjct: 340 TEIRATLTAAQKYPHDRLVLCFQPHTYSRTKAFLNDFADVLSMADVVVLADIYAAREQNT 399

Query: 426 -----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                + I   ++          +  E  +   E     D+L+  G G+
Sbjct: 400 YGISSKDILDLLLEKGVNAHYFPSFEEIEKFLSENCVNGDLLITMGAGN 448


>gi|327330618|gb|EGE72364.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL097PA1]
          Length = 471

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 153/431 (35%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH   P  +A GA  +VVSSA         IR + P LV  +          +  A+ + 
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALML 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     +++ GT GK++    V  +   +G                 D      SP+  
Sbjct: 114 GR---EGVSIAGTHGKTTTTGMVATMLDCAGA----------------DPSYAIGSPLAA 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S L       V  + S     Q+    +       TN+  DH+D   T QAYF+  
Sbjct: 155 TGMSSRLGGGEAFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNK 288
           + +     P+    +  ADD  + E+  R  +    RV++ G  +   + L  +      
Sbjct: 210 VSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVVTYGESEQAEVRLVDLDLNGTT 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+            +PG + + NA  A  +   +GI    +L  +        RF+ 
Sbjct: 268 ASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQL 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           VG  +    ++ DYAH    L   L   R +    GR+I  F                 A
Sbjct: 328 VGRVAD-VSVFDDYAHHPTELRATLGAARRVVTGQGRVIACFQPHLFSRTRDFAGEFGSA 386

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD  IV+D  P  EDP      E +   +I          ++ +      E +   D
Sbjct: 387 LTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGD 446

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 447 LVITLGAGDVT 457


>gi|326795769|ref|YP_004313589.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
 gi|326546533|gb|ADZ91753.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
          Length = 476

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 143/418 (34%), Gaps = 49/418 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS+A + ++          I +V    + L+      +G      +AV GT GK+
Sbjct: 77  AHVIVVSTAINEENPEIKWAKEHRIPIVRRA-EMLAELMRYRHG------IAVAGTHGKT 129

Query: 128 SVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S +  I   +G   +F IG   T +           S  YL    +       + + 
Sbjct: 130 TTTSLMSSILTATGDAPTFVIGGKLTSAG----TNAQLGSSKYLV---AEADESDASFL- 181

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++      TN+  DH+D +Q            F   LP    A++
Sbjct: 182 --------------HLQPQTVIVTNIDEDHMDTYQGDFEQVKRTFIEFIHNLPFYGLAVL 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD   + +M         VL+ G +     +   +       +    + EG+      
Sbjct: 228 CIDDENVRSIMPELSRP---VLTYGIEEQADFYATDIKQSGRYCEFMAHLPEGEPIRIRL 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYV 360
           P+PG+  V NAL    +   +G+   ++   L     V  RF+     V ++        
Sbjct: 285 PMPGKHNVLNALATIAVATDLGVAPNVIQAGLMGFEGVGRRFQELEPLVLSDGGKAMFVD 344

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H  + +   +  IR      R+++V+                  L   D+ I+ D  
Sbjct: 345 DYGHHPSEVLATINAIRDGWPEKRLVMVYQPHRYTRTRDLYEDFVRVLSKVDVLILLDVY 404

Query: 420 PRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
              E      D + +   I + G    I   +  E +++ +   L   D+L+  G G+
Sbjct: 405 SAGEAIINGADSKSLCGSIRMRGTVDPIHVRDDGE-LQSILSNVLRDDDLLITQGAGN 461


>gi|297571254|ref|YP_003697028.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931601|gb|ADH92409.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 450

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 103/271 (38%), Gaps = 7/271 (2%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+  DH+D++ + +A+  A    F   +      +   DD  +  + + A  
Sbjct: 167 RPRIALVTNVEPDHLDHYGSAEAFDQA-FVDFAGKIVPGGLLVCCTDDPGAARLAEAAQV 225

Query: 263 AGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            G R+ + G +   G    +  V +  N  +  +    ++      + G   + NA+ A 
Sbjct: 226 HGVRIATYGMKPMPGDHTMISGVVSGANGVEAHVRRGDQEAHIRLSVHGTHMLMNAVGAW 285

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +C  +G D+A     L        RFE  G    G R+  DYAH    +E  L+  R++
Sbjct: 286 IVCCDLGFDAAESASALASFTGTGRRFELRG-EVNGVRVIDDYAHHPTEVEATLRTARSV 344

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIP 437
           T+GR+ VVF                 ALD AD  IVT      E P        I+    
Sbjct: 345 TTGRVKVVFQPHLYSRTRHFARAFADALDTADDIIVTSVYAAREVPNDGVEGDAIVAHSH 404

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + I+A        N  D+++  G G
Sbjct: 405 KARYIPDMIDAACAIAADSNPGDLIMTMGAG 435


>gi|67920791|ref|ZP_00514310.1| UDP-N-acetylmuramate--alanine ligase [Crocosphaera watsonii WH
           8501]
 gi|67856908|gb|EAM52148.1| UDP-N-acetylmuramate--alanine ligase [Crocosphaera watsonii WH
           8501]
          Length = 503

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 147/428 (34%), Gaps = 57/428 (13%)

Query: 71  IVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A  ++  +++A      PI    +    L               +AV GT GK++
Sbjct: 114 VICSTAIGHNNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTT 164

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++G+    I                    +   +  + + ++G   V+  
Sbjct: 165 TSSLIGYMLLKAGVDPTII----------------VGGEVDAWEGNARIGARGGYLVAEA 208

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S G             G  TN+  DH D++QT         ++FE      +   I  
Sbjct: 209 DESDGSLTKH----YPNIGIVTNIELDHPDHYQTLDDVVKT-FQIFE------TQCDILI 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
                + V  +   +    L    +G    +K++ + HN     +  + K   +    +P
Sbjct: 258 GCLDCETVATQLTPSITYSLD-SNKGADYTVKQLLSDHNGTTAQVWEKDKYLGEMRLTIP 316

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A  +   +G++ +++ + L        RFE  G    G     DYAH  +
Sbjct: 317 GNHNVSNALAAIAVGRKLGLEFSVIADALFTFEGAKRRFEQRGH-CNGVTFIDDYAHHPS 375

Query: 368 SLEMILKNIRTITSGRII----VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +E  L   R    G  I     +F                +  + AD+ ++TD     E
Sbjct: 376 EIEATLSAARCKVDGNNISRVVAIFQPHRYSRTATFLKEFSVCFNYADLVVLTDIYSAGE 435

Query: 424 --------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHI 474
                       I  +  H      E    ++A+  A+  +L   D+++  G G+    I
Sbjct: 436 VNRHNISGQDLAIAVQDNHHAQVIYEPS--LKALNEALTSLLQPGDLVLFLGAGN-LNQI 492

Query: 475 VTNGEKKM 482
           +     + 
Sbjct: 493 IPQVISQY 500


>gi|327194621|gb|EGE61471.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli
           CNPAF512]
          Length = 471

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 140/416 (33%), Gaps = 47/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLEAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
            D    + ++ R  +   ++++ G      +  K V     +    + +  +        
Sbjct: 218 LDHPEVQSLVGRIEDR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTEL 275

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+PG   + NA  A  +   +GI S  + + L     V  RF   G    G +I+
Sbjct: 276 KGLVMPMPGRHNISNATAAIAVANRLGISSVDIAKGLASFGGVKRRFTLTG-EWNGVQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +L+  R    GRII V                    + AD   +    
Sbjct: 335 DDYGHHPVEIKAVLRAAREACKGRIIAVHQPHRYSRLASLFEEFAACFNDADSIFLAPVY 394

Query: 420 PRSEDPEK------IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
              ED  +      + + I  G        +  E + +   E+    D +V+ G G
Sbjct: 395 AAGEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|331696621|ref|YP_004332860.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951310|gb|AEA25007.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 476

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 99/457 (21%), Positives = 160/457 (35%), Gaps = 62/457 (13%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           DSR +      +A+   G +   GH      +  G   +VVS+A    +          +
Sbjct: 41  DSRTV------MALRALGAEVALGHDAANLDLLGGPPTVVVSTAIRETNPELAAARERGL 94

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV          A    G+    + AV GT GK+S +S +                  T
Sbjct: 95  LVVHRADA----LADLTTGR---RVAAVAGTHGKTSTSSML------------------T 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           ++        +      LA + +     G     VEA                    TN+
Sbjct: 130 VALQHCRLDPSFAIGGDLAASGAGAHHGGGDVFVVEADESDGS---FTAYAPEVAVVTNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH+D+H T++AY  A    F   + ++   ++ ADDA +  + ++A   G  V   G 
Sbjct: 187 EPDHLDHHGTEEAY-RAVFEAFVGRIAEKGTLVVCADDAGAAALGEQAEARGLTVRRYGR 245

Query: 273 QG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    L          ++       +      +PGE    NAL A    + +G   
Sbjct: 246 TATGPDDAVLLDHVPDGPGARMRARHRDAELAVRLAVPGEHMALNALAALLAGVELGAPV 305

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVV 387
             +L  L +   V  RFEF G  + G  +Y DYAH    +   L+  R++    GR++V 
Sbjct: 306 DGLLAGLAEFDGVRRRFEFKG-RAAGVAVYDDYAHHPTEVAATLRAARSVAGPTGRVVVA 364

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAE-------IIHG 435
           F                 AL LAD  +V D     EDPE      + A+       ++H 
Sbjct: 365 FQPHLYSRTRLFATEFGRALALADEVVVLDVYGAREDPEPGVTGALVADAVTLPPQVVHH 424

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +P + +             +    D+++  G G  TV
Sbjct: 425 VPSWSQVP------AVLARLARPGDLVLTMGAGDVTV 455


>gi|15602008|ref|NP_245080.1| UDP-N-acetylmuramate--L-alanine ligase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431689|sp|P57818|MURC_PASMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12720360|gb|AAK02227.1| MurC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 482

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 133/420 (31%), Gaps = 42/420 (10%)

Query: 63  AIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           A     GA  +VVSSA    +          I V+    +   + A  +  +H    +AV
Sbjct: 77  AAENIDGASVVVVSSAIRADNVEVVAAQERRIPVI----QRAQMLAEIMRFRHG---IAV 129

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++  + +  I   +GL    +      S+    +   +         ++     
Sbjct: 130 AGTHGKTTTTAMISMIYAEAGLDPTFVNGGLVKSAGTNAHLGCS------RYLIAEADES 183

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             + +                ++ +    TN+  DH++ +             F   LP 
Sbjct: 184 DASFL---------------HLQPMVSVVTNIEPDHMETYHGSFEEMKHTYVNFLHNLPF 228

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ ADD    E+  +             +  +                I+  G+  
Sbjct: 229 YGLAVLCADDDVLTELTPKV-GRQVITYGFSEKADYRIEDYQQTGFQGHYTVITPSGERI 287

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGR 357
           D L  +PG     NA  A  +    GI +  +L  L        RF+ +G     +    
Sbjct: 288 DVLLNVPGRHNALNATAALVVAKEEGIGNEAILAALADFQGAGRRFDQLGQFIRPNGKVM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    + + ++  R    + RI ++F                  L   D+ I+ 
Sbjct: 348 LVDDYGHHPTEVGVTIQAARQGWENKRIAMIFQPHRYSRTRDLFDDFVQVLSQVDVLIML 407

Query: 417 DDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D     E P        +   I + G    I   +  +      ++L   D+++  G G+
Sbjct: 408 DVYAAGETPIAGADSRSLCRSIRNLGKVDPIFVSDHRQLGEILDQVLQDGDLILAQGAGN 467


>gi|207721502|ref|YP_002251942.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
 gi|206586662|emb|CAQ17248.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
          Length = 483

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 138/424 (32%), Gaps = 56/424 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL    +     ++S   + RL T         ++       + ++
Sbjct: 117 TTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIVAEADESDASFLN 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A        F   LP    A++
Sbjct: 171 ---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-----SVEGKDF 300
             DD   +E++         V+  G+            A+  + + T+            
Sbjct: 216 CVDDPNVREILPFVSKP---VVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG- 355
                LPG   V NAL A  +   + +    +++ L + + V  RF+  G     + +G 
Sbjct: 273 SITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGR 332

Query: 356 GRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DY H    +   +          R+++ F                  L   D  +
Sbjct: 333 FTLIDDYGHHPVEMAATVAAARGAFPDRRLVLAFQPHRFTRTRDCFEDFIKVLGTVDGLL 392

Query: 415 VTDDNPRSEDP-------EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
           + +     E P          RA  + G   P F+E   +  +AI  A       DV++ 
Sbjct: 393 LAEVYSAGEPPIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDA---AQDNDVVIT 449

Query: 465 AGKG 468
            G G
Sbjct: 450 MGAG 453


>gi|158334963|ref|YP_001516135.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
 gi|189028946|sp|B0CCD6|MURC_ACAM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158305204|gb|ABW26821.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
          Length = 487

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 140/426 (32%), Gaps = 56/426 (13%)

Query: 66  QGAEA---IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           QG+ A   ++ S+A      ++ A +++  PI    +    L         + P++ +A+
Sbjct: 71  QGSSAPPQVICSTAIHEDNPEYQAAVQAGCPIFHRSDVLAAL-------MQEFPQS-IAI 122

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++ +S V  +  ++ L    I      +         T    YL          
Sbjct: 123 AGTHGKTTTSSLVGYLLLQASLDPTIIVGGEVAA---WGGNARTGESPYLVAEADESDGS 179

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V                        G  TN+  DH D++ +          +F+E +  
Sbjct: 180 LVKFF------------------PHIGVITNIELDHPDHYTSLDQVV----SIFQEFVDH 217

Query: 241 ESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK 298
               I+  D    +   +  A +      S+  +      ++ +        V +   G+
Sbjct: 218 CHTLIVSVDCPTIADRFLALATDQSMITYSLSSKVSADYTVQNIDYSGQGTIVEVLERGE 277

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PL GE  + NAL A  +   +G++   + + L        RFE  G  ++G  
Sbjct: 278 SLGQLELPLLGEHNLSNALAAVAVGRYVGLEFPAIAKALRTFSGAKRRFEIYG-EAQGIC 336

Query: 358 IYVDYAHTSNSLEMIL--------KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +  DYAH  + +++ L            T +  R++ VF                 +   
Sbjct: 337 LIDDYAHHPSEIQVTLASAKLQAQAAAATYSQSRVVAVFQPHRYSRAATFFQEFSQSFQD 396

Query: 410 ADIAIVTDDNPRSE-DPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AD+ +VTD     E +P  I        I         +      I      L   DV++
Sbjct: 397 ADLVVVTDIYSAGEANPGTINGKKLADAIAANHSVVTFQPTLTNVIDFLQGHLQSGDVVL 456

Query: 464 VAGKGH 469
             G G 
Sbjct: 457 FLGAGD 462


>gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|315022146|gb|EFT35175.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Riemerella anatipestifer RA-YM]
          Length = 814

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 138/410 (33%), Gaps = 32/410 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            ++        +   ++ I   + DSR I       FVAI   K +G  +I  A+ +G E
Sbjct: 6   RQIAEITGAKLIGAGDKIIKHFAFDSRIIYSPKNTGFVAIKTKKNNGEKYIASAVEKGIE 65

Query: 70  AIVVSSA-YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            IV        +  S         L+VD+T KFL   A      H    + +TG++GK+ 
Sbjct: 66  LIVSEHKTLDNEHLSW--------LIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTI 117

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q           I    +  SF                 L+      V    V 
Sbjct: 118 VKEWLYQCLSE------DIRCVKSPKSFNSQIG-------LPLSLLNIKPEHKVGIFEVG 164

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S                G  T++G  HI   ++++   + K+ LF++        I   
Sbjct: 165 ISEPNEMTTLETIFSPKIGVLTHIGSAHISNFKSEKHLVDEKISLFKD----SESIIFNG 220

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D+      +   +++   ++S G+               +Q +T+    K F F      
Sbjct: 221 DNILVSNKINTLYSSK-NLISYGFNKDNNIHISSNWKDRQQPITVQCFDKSFSFPAQQRD 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  + N L    +   +   +  ++E +  L  V  R E V        I   +    +S
Sbjct: 280 EATLSNVLAIIAVMHLLEFSTEKMIEKINNLKAVEMRLESVNGIKNNLIINDSFNLDLDS 339

Query: 369 LEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIV 415
           L++  + I++    +  ++   F    D D   + +   I     +   +
Sbjct: 340 LKIAFEFIKSYQKPKKSLIITDFTEKSDADNLYQEVASLINEQNFNKVFL 389


>gi|296394968|ref|YP_003659852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Segniliparus
           rotundus DSM 44985]
 gi|296182115|gb|ADG99021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Segniliparus
           rotundus DSM 44985]
          Length = 491

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 86/491 (17%), Positives = 158/491 (32%), Gaps = 60/491 (12%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     ++   +     Q  + +  +   +  DSR +  G +F+A+ G + DG      
Sbjct: 1   MIPWTLRQVAAAVGGKLHQVPDPEQLVTAPLEHDSRKVVPGGLFLAVPGERTDGR----- 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV---------DNTRKFLSLFASRLYGKH 113
                      + A       ++   + P +V+           +R+      + L   +
Sbjct: 56  ------SHAAAAHAAGAVATLSSDPLDVPTVVLGAGPYPTGPQESRRLALAALAALAKAN 109

Query: 114 PENILA-------VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            + ++A       +TG+SGK+S    V Q+    G +    G  +               
Sbjct: 110 AQALVARGLTVVGITGSSGKTSTKDLVTQVLATRGATVGPPGSFNNELGHPWTVLRADQD 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
             +L   L+             A + G         +   G    +G  H+    +++  
Sbjct: 170 TRFLVLELA-------------ARTIGHIAELAQIAQPRIGVVLGVGSAHLGVFGSRENI 216

Query: 227 FNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVC 283
             AK  L E L   +    A++ ADD     +  R      RV+  G  +   +    V 
Sbjct: 217 AIAKGELVEALPCADDGGVAVLNADDPLVSAMASRTR---ARVVRYGMAESADVRAADVR 273

Query: 284 AIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               ++   T+     D      + GE Q +NAL AA +    G+  A   E L      
Sbjct: 274 LDPLSRASFTLITPQGDAPVTLRVHGEHQAHNALAAAAVAAECGLSPAQTAEALSAAQAA 333

Query: 343 PGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGK 398
             R   V   + G  +  D Y     S+   L+ +  +     G    V G  G+     
Sbjct: 334 SPRRMQVAERADGVVVVNDSYNANPESMRAGLRALVGMAHQCGGASWAVLGQMGELGDDS 393

Query: 399 RPIMGK----IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAI 453
             +  +    +     D  +V  D  RS       A +     G  +   +   A R   
Sbjct: 394 IVLHDQLGRFVVRLSVDRLVVVGD-SRSAKALHTGAVLEGSWSGEAVLVPDWQSAARLVA 452

Query: 454 EMLNKQDVLVV 464
             L  +DV++V
Sbjct: 453 AELGPRDVVLV 463


>gi|238922862|ref|YP_002936375.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
 gi|259509771|sp|C4ZBV1|MURC_EUBR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238874534|gb|ACR74241.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
          Length = 459

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 138/409 (33%), Gaps = 38/409 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSV 129
           +++   L  ++A I  + P            L  + L G+  +N    +AV GT GK++ 
Sbjct: 66  ITTGIDLVVYTAAIHESNPEFAAAKAAGIPMLTRAELLGQIMDNYDYSIAVAGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I   +            I S    N     S  ++++A  Y +S          
Sbjct: 126 TSMISEILLAAQTDPTI--SVGGILSSIHGNLRVGDSEYFISEACEYTNSF--------- 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                        +       N+  +H+D+ +      ++        L   +  I    
Sbjct: 175 ----------LNFRPRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEI 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPL 306
           D Y + V         ++++ G+  K+    +     +K   + +   +    FD    +
Sbjct: 225 DRYEEIVA----GLPQKIITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  L   +G+D   +L  L+K      RF++ G    G  I  DYAH  
Sbjct: 281 PGAHNVSNALAAIALSTTLGLDEESILTGLDKFGGADRRFQYKG-KVNGVTIIDDYAHHP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
             +   L   +     R+++ F                  L +AD+ ++ D     E   
Sbjct: 340 TEIRATLTAAQKYPHDRLVLCFQPHTYSRTKAFLNDFADVLSMADVVVLADIYAAREQNT 399

Query: 426 -----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                + I   ++          +  E  +   E     D+L+  G G+
Sbjct: 400 YGISSKDILDLLLEKGVNAHYFPSFEEIEKFLSENCVNGDLLITMGAGN 448


>gi|134095975|ref|YP_001101050.1| D-alanine:D-alanine-adding enzyme [Herminiimonas arsenicoxydans]
          Length = 371

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 118/313 (37%), Gaps = 15/313 (4%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
             L   AS    +    ++ VTG++GK++V   +  I   +          +T  +F  D
Sbjct: 1   MALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAA---FGPDNYLATRGNFNND 57

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             +        A   + +   G+ H    A    + Q          G   N  R+H ++
Sbjct: 58  IGVPLTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQ-------PTVGLVNNAQREHQEF 110

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            ++ +A       +   L P +  A+  ADDA++   + R++ A  + L+ G+       
Sbjct: 111 MESVEAVAQENGAVLASL-PADGVAVFPADDAFTP--LWRSYAAQRKTLTFGFSADADVR 167

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               A      ++++   + F       G   V NAL A    +AIGI    ++  L+  
Sbjct: 168 CTYAANVFGNDMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAF 227

Query: 340 HVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V GR +     + G  +  D Y    +S+   +  +  + S RI+V+   G   + G+
Sbjct: 228 APVSGRLQR-KLAASGALVIDDTYNANPDSVRAAIDVLAQMASPRILVLGDMGEVGNDGR 286

Query: 399 RPIMGKIALDLAD 411
           +      A   A+
Sbjct: 287 QYHEEIGAYARAN 299


>gi|126172655|ref|YP_001048804.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|152998953|ref|YP_001364634.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS185]
 gi|160873539|ref|YP_001552855.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS195]
 gi|217971634|ref|YP_002356385.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS223]
 gi|304411642|ref|ZP_07393254.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|307306306|ref|ZP_07586051.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|166224727|sp|A3CZM2|MURC_SHEB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224728|sp|A6WID2|MURC_SHEB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082498|sp|A9KY30|MURC_SHEB9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766021|sp|B8E699|MURC_SHEB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125995860|gb|ABN59935.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|151363571|gb|ABS06571.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS185]
 gi|160859061|gb|ABX47595.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS195]
 gi|217496769|gb|ACK44962.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS223]
 gi|304349830|gb|EFM14236.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|306911179|gb|EFN41606.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|315265769|gb|ADT92622.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS678]
          Length = 488

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 144/409 (35%), Gaps = 44/409 (10%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S+A +L++          I +V    + L+      +G      +A+ GT GK++  S +
Sbjct: 86  STAINLENPEILAAKELRIPIVRRA-EMLAELMRYRHG------VAIAGTHGKTTTTSLI 138

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +  ++G       PT  I                    ++       + +        
Sbjct: 139 ASVYGQAGRD-----PTFVIGGLLNSAGTNARLGTSRY-LIAEADESDASFL-------- 184

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   ++ +    TN+  DH+D +        +    F   LP    A++  DDA  
Sbjct: 185 -------HLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVV 237

Query: 254 KEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQ 311
           +E+M R      ++++ G+     +         ++ + T+  +GK D D +  LPG+  
Sbjct: 238 REIMPRIGR---QLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKADLDLVLNLPGQHN 294

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNS 368
           V NAL A  +     ID + + + L +   +  RF+ +G   T      +  DY H  + 
Sbjct: 295 VLNALAAIAVATEDEIDDSAITQALVEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSE 354

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
           +   +K  R      R+++ +                  L   D  ++ D     E P  
Sbjct: 355 VAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFVEVLSQVDCLLLLDVYSAGEAPIT 414

Query: 426 ----EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 +   I + G    I   +  +      ++L + D+L+  G G+
Sbjct: 415 GADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLLTQGAGN 463


>gi|302335883|ref|YP_003801090.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
 gi|301319723|gb|ADK68210.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
          Length = 471

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 143/416 (34%), Gaps = 52/416 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-----------YGK 112
             +G   ++ S     +   A      P       R      A              + +
Sbjct: 59  AERGVRVVLGSEDVRGRFDLAVASPGIPE------RSAFFSAARACSTEVIGEPEFAWRE 112

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P+  +A+TGT+GK++  S V  + + +G  +  +G    I     D  +      +   
Sbjct: 113 SPDRWVAITGTNGKTTTTSLVTAMLRSAGTDAVSVG---NIGRLCTDELVRRRDGAWFVA 169

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L               SS  L   RL  +     +  N+  DH+++H + + Y  AK R
Sbjct: 170 EL---------------SSFQLATSRL--LHPRCAALLNVTPDHLEWHGSLEGYAAAKER 212

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +F + L  +  A++  +D Y ++ + R    G R L VG   +   +    A      +T
Sbjct: 213 IF-QNLSGDDLAVVSQEDGYCRDAIGRLEARGVRTLHVGV--REEPVSGEAAFVRDGWLT 269

Query: 293 ISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + ++G +         PL GE    N L A+ + + +G     V   LE  H +  R E 
Sbjct: 270 VRLDGGERRVAPMANLPLRGEHNAQNMLAASSMALFLGASVEAVRRALEGFHPIEHRIEP 329

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VG  +    +    A  ++S+E  L           IVV   G D+      +   +   
Sbjct: 330 VGEFAGVRFVNDSKATNTDSVEKALTAF----DRGRIVVLLGGHDKGTDLGSLARAVNER 385

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                         E   +   E   G    I   +  EA   A+      DV+++
Sbjct: 386 CKAAVCFGA---AGERIARAVRE-AGGPTQVIRAPHLREAFLAAVGAARPGDVVLL 437


>gi|225850179|ref|YP_002730413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
 gi|225646272|gb|ACO04458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
          Length = 419

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 155/379 (40%), Gaps = 45/379 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +++AVTGT GKS+ +  +  I    G     IG      ++                  S
Sbjct: 81  SVIAVTGTDGKSTTSKLIHHII---GEEKADIG-----GNYGTP--------------FS 118

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            + S+G   V +E SS  +  +  +  +     F N   DH+D+H+    Y  +K RLF 
Sbjct: 119 DIVSEGKDTVVLELSSFQI--YSTEMFRPDIAVFLNFYPDHLDWHKKLLHYRLSKYRLFR 176

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTI 293
             + +E PA++  DD   +   K+       +  +    +G +    ++    N  +   
Sbjct: 177 N-MKEEDPAVLNFDDQVVRNTPKKGKRYYFSLSPLPDNLEGAYYDGSEIVLKINGFKFKF 235

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          L G   + N + +       GID   + E L+    +P R E+VG + 
Sbjct: 236 GLSD------IHLKGIHNIQNIMASVVTAYIYGIDPETIEERLKSFKPLPHRMEYVG-SI 288

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G   Y D   T+  ++ + K +++    R+I++   G ++      +  ++   + ++ 
Sbjct: 289 NGVDFYNDSKATT--VQAVKKAVQSFDGKRVILI-TGGINKGGDFSDLRDELLNSVKEVF 345

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           I+        D + I + I   +   I K +  +A+ TA +   K DV++++  G  +  
Sbjct: 346 II------GRDRKSIYSMIKDYVKAEI-KESLEDAVNTAFKKAEKGDVILLS-PGCASFD 397

Query: 474 IVTNGEKKMSVDCDIIREI 492
           +  N +++  +   I+R++
Sbjct: 398 MFKNYQERGEIFKSIVRKL 416


>gi|145223576|ref|YP_001134254.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
 gi|189029001|sp|A4TBE7|MURC_MYCGI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145216062|gb|ABP45466.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
          Length = 475

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 100/461 (21%), Positives = 154/461 (33%), Gaps = 61/461 (13%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRSN 89
           DSR +      +A+   G +   GH   P A+     G  A+V + A         I   
Sbjct: 47  DSRGL------IALRARGAQVRIGHD--PSALDMLPGGPTAVVTTHA--------AIPKT 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS-FQ 146
            P LV    R    +    +  +  ++   L VTGT GK+S  S +    Q  G    F 
Sbjct: 91  NPELVEARRRGIPVILRPAVLARLMDDRTSLLVTGTHGKTSTTSMIIVALQHCGFDPSFA 150

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +G     +     +                    G T V+    S G             
Sbjct: 151 VGGDLGQAGTNAHHGS------------------GSTFVAEADESDGSLLEY----SPDV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+D++ T + Y  A    F + +      ++  DD  +  + +R    G R
Sbjct: 189 AVVTNIEADHLDFYGTVENYT-AVFDQFVDRIKPVGALVVCVDDPGAAALAERTAALGIR 247

Query: 267 VLSVG-YQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           VL  G   G    L     +      ++++  E +       +PG     NAL A     
Sbjct: 248 VLRYGSAPGLDATLLDWSQLGTGAVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAAT 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---- 379
             G D   VL+ L     V  RFE VGT   G R++ DYAH    +   +  +R +    
Sbjct: 308 QAGADIDAVLDGLAGFDGVRRRFELVGTAG-GVRVFDDYAHHPTEVRAAITALRAVAEQT 366

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIP 437
              R + VF                 +L  AD   V D     E   P    A I  G+ 
Sbjct: 367 PGARTVAVFQPHLYSRTETFATEFAASLSTADEVFVLDVYAAREQPLPGVSGATIADGVS 426

Query: 438 GFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHET--VHIV 475
             +    +          +++  DV+V  G G  T     +
Sbjct: 427 APVTYIADFSAVAARVAAVVSAGDVVVTMGAGDVTMLGQEI 467


>gi|224534237|ref|ZP_03674815.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
 gi|224514339|gb|EEF84655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
          Length = 463

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 137/394 (34%), Gaps = 33/394 (8%)

Query: 34  SSDSRHIQAGW-----IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIR 87
           S DSR I  G      ++ A  GNK DG  F+   I  G +  + S  +  +        
Sbjct: 32  SLDSREIN-GDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECIEYLNDN 90

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                L+  +  K L   AS L  +     +A+TG++GK++    +  I  +      + 
Sbjct: 91  EGLVFLLTSDVIKLLQTLASVLIERTSFKRIAITGSNGKTTTKEMLYSILSK------KY 144

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  +   D              L    ++      V  S  G  +     +K    
Sbjct: 145 KTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMELLSQILKPEIV 197

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA  A   V
Sbjct: 198 IITNINYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEKNDYCAYLEKRAKIANPNV 254

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             V +  + +++K    +  K       +G  F++   L G   ++NA+    L + +G+
Sbjct: 255 KIVYFDFENLNIKSFSFLEGKFSYDFVYKG--FEYSILLLGRHNIFNAIGCINLALFLGM 312

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385
               + E L +     GR E +  N  G  I  D Y     S   +   I  +    +  
Sbjct: 313 REKEIREGLIETTFQKGRAEILIKN--GYLILNDSYNGNMGSFIALKNMILDLNIQNKKF 370

Query: 386 VVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
           +V G     G    +  + ++ +      D   +
Sbjct: 371 IVLGSFKELGEFAYKTHKDLIQEAVSMNFDKIFL 404


>gi|315080330|gb|EFT52306.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL078PA1]
          Length = 471

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 153/431 (35%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH   P  +A GA  +VVSSA         IR + P LV  +          +  A+ + 
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALML 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     +++ GT GK++    V  +   +G                 D      S +  
Sbjct: 114 GR---EGVSIAGTHGKTTTTGMVATMLDCAGA----------------DPSYVIGSSLAA 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L       V  + S     Q+    +       TN+  DH+D   T QAYF+  
Sbjct: 155 MGMSSHLGGGEAFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNK 288
           + +     P+    +  ADD  + E+  R  +    RV++ G  +   + L  +      
Sbjct: 210 VSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVVTYGESEQAEVRLVDLDLNGTT 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+            +PG + + NA  A  +   +GI    +L  +        RF+ 
Sbjct: 268 ASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQL 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           VG  +    ++ DYAH    L   L   R +    GR+I  F                 A
Sbjct: 328 VGRVAD-VSVFDDYAHHPTELRATLGAARRVVTGQGRVIACFQPHLFSRTRDFAGEFGSA 386

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD  IV+D  P  EDP      E +   +I          ++ +      E +   D
Sbjct: 387 LTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGD 446

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 447 LVITLGAGDVT 457


>gi|115492555|ref|XP_001210905.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114197765|gb|EAU39465.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 839

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 138/419 (32%), Gaps = 52/419 (12%)

Query: 68  AEAIVVSSAY---SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+ +V SSA    S  +          I V+  +    SL             +A+ G+ 
Sbjct: 426 AKLVVASSAATWGSKPNVEVEAARERRIPVIHRSEMLASLMRHH-------KSIAICGSH 478

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  S V  + +  GLS   I   + ++ +  +  + +                    
Sbjct: 479 GKSTTTSMVAGMLEAGGLSPTTI-SGAVVTQYGSNAHMGSG-----------------NW 520

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA        +L  +       TN+  DHI ++ TQ+    A    F   +P    A
Sbjct: 521 MVVEADESDGTMVQLPAL---ISVVTNIDSDHITFYGTQEK-TRATFAQFVRNVPFYGLA 576

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----- 299
           ++  DD   ++++    +       V  +   +  + V          +SV  +      
Sbjct: 577 VLCIDDPGVRKMLPEVQDRNIITYGVS-EDADVRAEDVKYNPQDSTFVLSVRNRRDGTRR 635

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                +  + G   + NAL    + + +GI+   +   L        R+  VG  + G +
Sbjct: 636 VVGCIVLNVLGLHNLQNALATTAIALELGIELESIRYALRNFQGTNRRYIHVG-EANGIQ 694

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLADIAIVT 416
           I  D+      ++      +   + RII V+      R+          A + +   I+ 
Sbjct: 695 IIDDFGTHPAEMKATQTMAKQAGARRIIAVYQPTAVVRNVEAWLEEYPAAFEESAHIIIG 754

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAG 466
             +    DP     +    +  ++    R +AI              +  + D +V  G
Sbjct: 755 QADGVGVDPVP-AGKARETLVQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMG 812


>gi|118496694|ref|YP_897744.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           novicida U112]
 gi|194324001|ref|ZP_03057776.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208780034|ref|ZP_03247377.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
 gi|166224690|sp|A0Q425|MURC_FRATN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118422600|gb|ABK88990.1| UDP-N-acetylmuramate-alanine ligase [Francisella novicida U112]
 gi|194321898|gb|EDX19381.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208744038|gb|EDZ90339.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
          Length = 451

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 128/362 (35%), Gaps = 32/362 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT GK++ +S +  +  +                   D   +      +  A S +
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQL------------------DKHSSFVVGGVVKYADSNI 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EA            +       TN+  DH+  +      +   +  F + 
Sbjct: 148 QVNGTDKLVIEADESDAS---FLFLSPQVVIITNIDLDHMATYNNS---YQTLLENFTDF 201

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + KES   IY   DD   ++++ + + +   V S G+     + +     I       I 
Sbjct: 202 VSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIR 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN 352
            +G D  F   LPG++ V NA      C+ +G     +   L K+  V  RF+      +
Sbjct: 262 YKGDDLSFKLQLPGKYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVIS 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                +  DY H    +   +  +R    + +II VF                 AL LAD
Sbjct: 322 GHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPKALSLAD 381

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+       E         +I  G+ G++       AI    ++ N+  V+++ G G 
Sbjct: 382 QLILLPTYSAGEQIIKGAESQDIAKGLSGYLLADGFDHAIYFLEKLANENTVILIQGAGD 441

Query: 470 ET 471
            T
Sbjct: 442 VT 443


>gi|187925441|ref|YP_001897083.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phytofirmans
           PsJN]
 gi|229486478|sp|B2SYX4|MURC_BURPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187716635|gb|ACD17859.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 136/429 (31%), Gaps = 51/429 (11%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A     GA A+VVS+A    +       +  I +V      L+       G      
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVM-LAELMRLKQG------ 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  +    GL      PT  I                  + +S  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLISAG 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++  +       +           +  +    TN+  DH+D +    A        F   
Sbjct: 147 ANARLGTGDFIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISV 295
           LP    A++  DD   KE++         ++  G+          V A   K   T +  
Sbjct: 207 LPFYGIAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVKAHDGKMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---- 351
           +    D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G     
Sbjct: 264 DAAPIDIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVV 323

Query: 352 ----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
                S    +  DY H    +   +   R    GR +V+ F                  
Sbjct: 324 SEGKASGAYTLVDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKV 383

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQ 459
           L   D  ++T+     E P        +   +           + ++ +  A+   +   
Sbjct: 384 LSTVDALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAVVRDG 443

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 444 DVVITMGAG 452


>gi|315103158|gb|EFT75134.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA2]
          Length = 471

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 154/431 (35%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH   P  +A GA  +VVSSA         IR + P LV  +          +  A+ + 
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALML 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     +++ GT GK++    V  +   +G                 D      SP+  
Sbjct: 114 GR---EGVSIAGTHGKTTTTGMVATMLDCAGA----------------DPSYVIGSPLAA 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L    V  V  + S     Q+    +       TN+  DH+D   T QAYF+  
Sbjct: 155 TGMSSHLGGGEVFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNK 288
           + +     P+    +  ADD  + E+  R  +    RV++ G  +   + L  +      
Sbjct: 210 VSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVVTYGESEQAEVRLVDLDLNGTT 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+            +PG + + NA  A  +   +GI    +L  +        RF+ 
Sbjct: 268 ASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQL 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           VG  +    ++ DYAH    L   L   R      GR+I  F                 A
Sbjct: 328 VGRVAD-VSVFDDYAHHPTELRATLGAARRAVTGQGRVIACFQPHLFSRTRDFAGEFGSA 386

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD  IV+D  P  EDP      E +   ++          ++ +      E +   D
Sbjct: 387 LTLADRVIVSDIYPAREDPIPGVTGEMVHDAVLAAGGDSRYVPDKQDLPEALAEEVRPGD 446

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 447 LVITLGAGDVT 457


>gi|134294648|ref|YP_001118383.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
 gi|166222968|sp|A4JB95|MURC_BURVG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134137805|gb|ABO53548.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
          Length = 465

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 143/430 (33%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +       +  + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARHQRVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSADAQVRAENIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            EG+     +  LPG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRSPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDN---------PRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNK 458
             D  ++T+              +   +    +    P F+    +  +A+         
Sbjct: 382 TVDALVLTEVYAAGEAAIATANGDALSRALRTVGKVDPVFVATVDDVPDALAKV---ARN 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|315604422|ref|ZP_07879488.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315314128|gb|EFU62179.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 463

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 95/451 (21%), Positives = 158/451 (35%), Gaps = 54/451 (11%)

Query: 50  VGNKED-GHL--FI-PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           VG   D GH    + P+A+      +VVSSA    +    +      LV+  + + L+L 
Sbjct: 51  VGVHVDVGHDASHVDPEAV------VVVSSAIREDNPELAVARRRGQLVIHRS-QALALA 103

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLT 163
           AS +        +AV G  GK+S +  +    +  G   S    G    + + A      
Sbjct: 104 ASGM------RFVAVAGAHGKTSTSGMLAIALRACGLDPSVAVGGVLPQLGTGAHLGG-- 155

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                            G   V+    S G   +            TN+  DH+D + ++
Sbjct: 156 -----------------GEVFVAEADESDGSFLNY----SPAIEIVTNVEPDHLDRYHSR 194

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-----KFIH 278
           + +    +     L+P     +  A+D  +  +   A + G RV++ G +        + 
Sbjct: 195 EEFEEIFVEFVRRLVP-GGLLVACAEDPGAARLADTAKSLGARVVTYGREEHSQCEADVL 253

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +  V         +++   +       +PGE  V NA  A    I  G++   + + L  
Sbjct: 254 ICDVSVDAEGASASLAWGPRRARLRLAVPGEHHVLNAAAAWVAGIECGVEPQAMADGLGT 313

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQG 397
                 RFE  G    G R++ DYAH    +E  ++  R +   G + VVF         
Sbjct: 314 YAGAARRFESRGAVG-GRRLFDDYAHHPTEVEAAIEQARVVAAGGEVTVVFQPHLYSRTR 372

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEM 455
                   AL  AD  ++       EDPE       I   + G     +  EA R A  +
Sbjct: 373 IFAERFASALSRADHVVLAGIYGAREDPEPGVDSGMIASRVVGASYAEDMHEAARRAARL 432

Query: 456 LNKQDVLVVAGKGHET--VHIVTNGEKKMSV 484
             +  V V  G G  T     V +  K+M  
Sbjct: 433 TPRGGVCVTMGAGSITRCGQDVLDEWKRMDS 463


>gi|302877580|ref|YP_003846144.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
 gi|302580369|gb|ADL54380.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
          Length = 466

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 139/421 (33%), Gaps = 54/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS+A S  +          I VV      L+       G      +AV GT GK+
Sbjct: 65  ADVVVVSTAVSQDNPEVVAARARHIPVVPRA-MMLAELMRLRQG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    +  R G       PT  I      +                    G   V  
Sbjct: 118 TTTSLTASVLARGGFD-----PTFVIGGKLNSSGTNAKLGT------------GEFIVVE 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S     +    ++ I    TN+  DH++ +    A        F E LP    A++ 
Sbjct: 161 ADESDASFLY----LQPILAVVTNIDEDHMETYGHDFAKLKQAFIDFIEHLPFYGRAMVC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG------KDFD 301
            DDA  +E++ R       V + G+      ++ +   H   ++  + +       +D  
Sbjct: 217 VDDANIREILPRVTKP---VTTYGFSEDAQ-IRAINVRHEGGKMCFTAQCRQNGTPRDLV 272

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGR 357
               LPG   V NAL A  + + IG+    ++  L++   V  RF+  G           
Sbjct: 273 ITLNLPGRHNVLNALAAIAIALEIGVADDAIIAALDEFEGVGRRFQRYGEIALPEGGRFT 332

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    +   L  +R      R+++ F                  L   D  ++ 
Sbjct: 333 LIDDYGHHPVEMAATLAAVRGAFPGRRLVLAFQPHRYTRTRDLFEDFVKILCGVDALLLA 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGK 467
           +     E   ++ A     +   +    + EAI         ++ ++     DV+V  G 
Sbjct: 393 EVYAAGET--RLVAADGRAMMHALRLAGQSEAIFVEHIADMPQSIMQWARDGDVVVTMGA 450

Query: 468 G 468
           G
Sbjct: 451 G 451


>gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
 gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
          Length = 830

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 138/416 (33%), Gaps = 29/416 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   E  I+ + +DSR +      +F A+   +  G  +IP    +G 
Sbjct: 5   IESIAECIGARRVGECEATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGV 64

Query: 69  EAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
              VV+       ++      S    L+V N  K L   A     +    I+ +TG++GK
Sbjct: 65  RNFVVTEEDFEKFKNGELGKLSTLNFLIVANPLKALQKLAEIHREEFKIPIIGITGSNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + V  ++ Q+            P   I    +        P+ + + L+  +  G+    
Sbjct: 125 TIVKEWLHQLLS----------PDRRIVRSPRSYNSQIGVPLSVWQ-LNEEAELGIFEAG 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +          R+  IK   G  TN+G  H +   + Q     K+ LF++        I 
Sbjct: 174 ISEMGEMNALKRM--IKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDC----DVVIY 227

Query: 247 YADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             D+   S  V K    A     S     + +++ +V    +   ++      D  F  P
Sbjct: 228 NGDNELISNCVAKSMLTAREIAWSRKDIERPLYISRVTKKEDHTVISYRYLDMDNTFCIP 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +  + N L     C+ +   +  + E + +L  +  R E     +    I   Y   
Sbjct: 288 FIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSD 347

Query: 366 SNSLEMILKN--IRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAI 414
             SL++ L     R+   G         +   G       R +   +     D  I
Sbjct: 348 LASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVRSRGIDKLI 403


>gi|50955148|ref|YP_062436.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|59798226|sp|Q6AE65|MURC_LEIXX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50951630|gb|AAT89331.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 464

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 142/434 (32%), Gaps = 49/434 (11%)

Query: 62  QAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL----------SLFASRLY 110
            A+   GA   +   A ++ D    + +    L     R  L             A  + 
Sbjct: 48  DALRALGANIAIGHDAANVGDADTLVVTGALWLDNPEYRLALERGLPVLHRSQALAWLIN 107

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++AV G  GK++    +       G     +                      +
Sbjct: 108 RK---RLVAVAGAHGKTTSTGMIVTGLLGLGADPSFVN-------------------GGV 145

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             +L   S  G   + V  +        L          TN+  DH+D++ + +A+ +A 
Sbjct: 146 IASLGTSSRAGSGELFVVEADESDGSFLLYDTA--VALITNVDPDHLDHYGSLEAFEDAF 203

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNK 288
           +   EE        ++ +DD  +++V +R   A    RVL+ G                 
Sbjct: 204 VAFAEE---SAELVVVSSDDPGAQQVTRRLRKAAPGKRVLTFGEAEDADIRVYSIVTDGP 260

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +S +   +     +PG     NA  A  L   +G + A  L  + +      RFE 
Sbjct: 261 VAFALSHDSDVYSACLRVPGRHNAINAAGAFALLTGLGFEPAASLAAIAEFGGTERRFEL 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD-RDQGKRPIMGKIA 406
            GT + G  +Y DYAH    +   L   RT+   GRII V       R +       +  
Sbjct: 321 HGTVA-GVSVYDDYAHHPTEVAAALSAARTVVGDGRIIAVHQPHLYSRTRLFAKEFAETL 379

Query: 407 LDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              AD  +V D     EDPE      + A++           +   A     E+  + D 
Sbjct: 380 EAYADETVVLDVYGAREDPEPGVTGALVADLFAHPERVAFIADWQAAADHTAEIAREGDF 439

Query: 462 LVVAGKGHETVHIV 475
           ++  G G     IV
Sbjct: 440 VITLGCGD-VYRIV 452


>gi|89897954|ref|YP_515064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
 gi|89331326|dbj|BAE80919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
          Length = 448

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 170/478 (35%), Gaps = 58/478 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +Q ++ +D+  L+     +P     RKI+ V+ DSR ++ G +F A+ G   DGH F+ Q
Sbjct: 1   MQSILLEDWVSLMLSDVKYPRSG--RKISGVAIDSRQVRPGDLFFALSGQCTDGHHFLKQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A VVS  Y    F         ++VV +T + L              I+ +TG
Sbjct: 59  AAQAGAVAAVVSKDYCGDSF------GLDLVVVQDTTEALKEAGENQGHLFQGTIVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++  +F +                S    +A      +   + L+  ++    +  
Sbjct: 113 SIGKTTTKTFAKTFLS------------SVYRVYASPKSYNSQLTVPLSLLMAD-GDEDF 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--AYFNAKMRLFEELLPK 240
             + +  S  G  +  L  ++      TN+   H      Q        K  +    L  
Sbjct: 160 IILEMGVSEPGNMRDLLSIVEPEISVITNIADQHAINFPDQGVRGIAEEKSHI----LQT 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  D  +    +K++ ++     +   +    + K +     K  V IS    D 
Sbjct: 216 SRIQLLPKDSPWYSHFIKQSPSSEKFSFAFYNETADFYYKAI----QKDSVIISTPEGDV 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF    P +    N L++  L   + +    ++     L + P RFE   +   G ++  
Sbjct: 272 DFAVSFPYKPAYSNLLISFSLAWLLDVPVDRIIHSCSDLQLPPMRFEL--SMRNGIQVIN 329

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-----ALDLADIAI 414
           D Y     ++   L  I   + G   V+   G   + G     G       AL  A+I  
Sbjct: 330 DAYNACPEAMIAALDAIPNPSEGGK-VILILGHMAELGNYSEEGHAIVANKALSKANIIF 388

Query: 415 VTDD------------------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              +                   P ++  E+I   ++      + KG+R  A+ + + 
Sbjct: 389 FIGEKWLSSQHLLKSSSCEVSFYPSAQSVEEILKSVVQQGDIVLLKGSRALALESLLS 446


>gi|71281643|ref|YP_268601.1| cyanophycin synthetase [Colwellia psychrerythraea 34H]
 gi|71147383|gb|AAZ27856.1| cyanophycin synthetase [Colwellia psychrerythraea 34H]
          Length = 939

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 141/400 (35%), Gaps = 45/400 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I  +TGT+GK++ +  +  I + +G     +G TST   +                +  
Sbjct: 497 PIAGITGTNGKTTTSRMLAHILKSAGHV---VGMTSTDGVYVDGQLSVKGDMTGPVSSQI 553

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L    V    +E +  G+ +  L   +    +  N+  DH+           A+++   
Sbjct: 554 VLRDPSVDIAVLETARGGIARSGLGYNECDVAACINVQEDHLGLRGIDTLDQLAEVKRIV 613

Query: 236 ELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKK------VCAIHN 287
             + K+S   + ADD    ++ +  +A +     ++ G+     H++       +    N
Sbjct: 614 VEVAKDSVV-LNADDPQCLKMAEHTKAKHLCYVTMNTGHSLVREHIRAGGRAVVLEKGIN 672

Query: 288 KQQVTISVEGKDFDFLFPLPGE--------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              +TI   G     L+               V NA+ AA L   +      + + L   
Sbjct: 673 GDMITIFDNGTHIPLLWTHLIPATLEGKALHNVQNAMFAAALAYCLDKPLEAIQQGLRTF 732

Query: 340 HVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQ 396
                +        +    R+ +DYAH ++ +  + +   +    G+ I V    GDR  
Sbjct: 733 TTTFYQAPGRMNVFDEHHFRVILDYAHNADGVRCMSELASKLEVKGKRITVLAGPGDRRD 792

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRS-----EDPEKIRAEI-IHGIPG--FIEKGNRIEA 448
                + K A    DI I   D+ R      E PE + + +   GI         + +EA
Sbjct: 793 EDIVNIAKAAAGHFDIYICKADDNRRGRGVNEVPELLASSLRAEGIDESQIYCISDEVEA 852

Query: 449 IRTAIEMLNKQDVLVVAG-------K-------GHETVHI 474
           I   +E+ N  D+L++ G       K       GHE    
Sbjct: 853 INKGLELANTDDLLMIFGDAITRCWKQIINFNSGHEPEQE 892


>gi|319782849|ref|YP_004142325.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168737|gb|ADV12275.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 468

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 137/417 (32%), Gaps = 47/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + +V        L   R         +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELKAAREKLLPIVRRAEMLAELMRFR-------QAVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVATLLDAGGLDPTVING-GIINAYGTNARMGDGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++ +      A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPAEIAVVTNIDPEHLDHYGSFDKVREA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKD------- 299
            D    + ++ R  +   RV++ G      +            +  + +  +        
Sbjct: 218 TDHPEVQALVSRIEDR--RVITYGENAQADVRFTNHRMSGAISEFDVVIRDRKTGGQTVI 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   V NA  A  +   +G+ +  + + L     V  RF   G+   G  I+
Sbjct: 276 AGLRLPMPGRHNVSNATAAIAVAHELGLSAEAIKKGLSSFAGVKRRFTHTGSW-DGVEIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +LK  R+ T GR+I +                    + AD  +V    
Sbjct: 335 DDYGHHPVEISAVLKAARSATQGRVIAIAQPHRFTRLHDLFNEFSTCFNDADTVMVAPVY 394

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
              E+P      + + + I  G            AI   + ++    D +V  G G+
Sbjct: 395 AAGEEPIDGVSSDALVSRIRAGGHRDARYIEGPAAIAPIVRDLAKPGDFVVFLGAGN 451


>gi|15805794|ref|NP_294492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
 gi|6458474|gb|AAF10342.1|AE001931_13 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
          Length = 433

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 148/450 (32%), Gaps = 77/450 (17%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR       FVA+ G K  G+ F+ +A+A GA  ++                  
Sbjct: 21  RRLTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPFVLTDLDVPRA---------- 70

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + VD+ R  L  +A     K+P  ++ +TG++GK++  S+         +  F     
Sbjct: 71  --VRVDDARGALFAWARSERAKNPL-VVGITGSAGKTTAKSYAAAALDAHFMPVFN---- 123

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+ + A        S   L      +   G+ H+   A         +D ++   G  T
Sbjct: 124 -TMPAIACFLVQYGASQKPL------VVEMGIDHIGEMA-------ELMDLVRPDVGVVT 169

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +G  H++     +   + K ++                   S+            V S 
Sbjct: 170 TIGPAHLEQFGMVETIAHEKGQILTARRALVG----------SQAAAFFPKAQFPHVDSY 219

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G+       + +       +      G     + PL    Q   A++   L    GI  A
Sbjct: 220 GFGDVTFRGEGLELSPQAARFRFGGMG----VILPLASRVQAEAAVLGMVLAREAGIALA 275

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS----GRII 385
                +  + V  GR+           +  D Y  +  ++   L  +  +      GR I
Sbjct: 276 DAAVRMSAVEVPGGRYRLHPGR---FTVIDDAYNASPVAVRAALDALHALKPEGEVGRRI 332

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GN 444
            V G   +    +R +  ++     +                  A++ +G+  F ++ G 
Sbjct: 333 SVLGRMLELGPTERELHAEVGSYAREQ-----------------ADLTYGVGEFAQELGE 375

Query: 445 RIEA-----IRTAIEMLNKQDVLVV-AGKG 468
           R  A     +   +  +   D+++V A +G
Sbjct: 376 RAFATVPELLADLLNEVRDGDIVLVKASRG 405


>gi|150015283|ref|YP_001307537.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901748|gb|ABR32581.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 880

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 141/357 (39%), Gaps = 29/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  + ++ G +   +G TST   +  +  +          A S L ++ V    +E + 
Sbjct: 495 LISHVLRKMGSN---VGMTSTDGVYLNEKCIHKGDDSGFNSARSILMNKDVDVAVLETAR 551

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L          TN+  DH  +D   + +     K  L  E +  +   ++ AD
Sbjct: 552 GGLVKRGLAYELADVAIITNITNDHLGLDGINSIEELSFTKA-LVGEAVKDDGFVVVNAD 610

Query: 250 DAYSKEVMKRAHNAGCRV------------LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           D YSK V+ R                    ++ G    F+   K+C I+NK++  I V  
Sbjct: 611 DKYSKTVINRFSAEKIYFAKDKENPLIQENIANGKIAVFVEDDKICVINNKKKYEI-VST 669

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRG 355
           ++    +    E+ + NA+ A    + + +D  ++ +      +        F   N   
Sbjct: 670 RELPISYNGTLEYNIENAMAACAGLVGLEVDYCMISKGFMDFGLKNEDNSGRFNMYNYLN 729

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            R+ +DYAH       I+ ++R I     +I V G  GDR       +G+I  +  D  +
Sbjct: 730 RRVILDYAHNIEGYRAIISSLRKIKGDNDLIGVIGIPGDRKDDIGYAIGEICANNFDKIV 789

Query: 415 VTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +D + R     +I   +   I             + ++A++ AI++ NK D++VV
Sbjct: 790 IKEDKDKRGRKSGEIADILEKSILKTNKNANLKICLDEVQALKYAIDISNKGDIIVV 846


>gi|300690342|ref|YP_003751337.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
 gi|299077402|emb|CBJ50027.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
          Length = 483

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 79/425 (18%), Positives = 139/425 (32%), Gaps = 58/425 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +          I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL    +     ++S   + RL T         ++       + ++
Sbjct: 117 TTTTSLVASVLAEGGLDPTFV-IGGRLNSAGANARLGTGD-----FIVAEADESDASFLN 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A        F   LP    A++
Sbjct: 171 ---------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-----SVEGKDF 300
             DD   +E++         V+  G+            A+  + + T+            
Sbjct: 216 CVDDPNVREILPFVSKP---VVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG- 355
                LPG   V NAL A  +   + +    +++ L + + V  RF+  G     + +G 
Sbjct: 273 SITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGR 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DY H    +   L   R    GR +V+ F                  L   D  +
Sbjct: 333 FTLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKVLGTVDALL 392

Query: 415 VTDDNPRSEDPEKIRAEIIH-----GIPGFIE------KGNRIEAIRTAIEMLNKQDVLV 463
           + +     E P  + A+         + G IE        +  +AI  A       DV++
Sbjct: 393 LAEVYAAGE-PSIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDA---AQDNDVVI 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 TMGAG 453


>gi|315443923|ref|YP_004076802.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
 gi|315262226|gb|ADT98967.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
          Length = 475

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 99/461 (21%), Positives = 153/461 (33%), Gaps = 61/461 (13%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRSN 89
           DSR +      +A+   G +   GH   P A+     G  A+V + A         I   
Sbjct: 47  DSRGL------IALRARGAQVRIGHD--PSALDMLPGGPTAVVTTHA--------AIPKT 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS-FQ 146
            P LV    R    +    +  +  ++   L VTGT GK+S  S +    Q  G    F 
Sbjct: 91  NPELVEARRRGIPVILRPAVLARLMDDRTSLLVTGTHGKTSTTSMIIVALQHCGFDPSFA 150

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +G     +     +                    G T V+    S G             
Sbjct: 151 VGGDLGQAGTNAHHGS------------------GSTFVAEADESDGSLLEY----SPDV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+D++ T + Y  A    F + +      ++  DD  +  + +R    G R
Sbjct: 189 AVVTNIEADHLDFYGTVENYT-AVFDQFVDRIKPGGALVVCVDDPGAAALAERTAALGIR 247

Query: 267 VLSVG-YQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           VL  G   G    L     +      ++++  E +       +PG     NAL A     
Sbjct: 248 VLRYGSAPGLDATLLDWSQLGTGAVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAAT 307

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---- 379
             G +   VL+ L     V  RFE VGT   G R++ DYAH    +   +  +R +    
Sbjct: 308 QAGAEIDAVLDGLAGFDGVRRRFELVGTAG-GVRVFDDYAHHPTEVRAAITALRAVAEQT 366

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIP 437
              R + VF                 +L  AD   V D     E   P    A I  G+ 
Sbjct: 367 PGARTVAVFQPHLYSRTETFATEFAASLSTADEVFVLDVYAAREQPLPGVSGATIADGVS 426

Query: 438 GFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHET--VHIV 475
             +    +           ++  DV+V  G G  T     +
Sbjct: 427 APVTYIADFSAVAARVAAAVSAGDVVVTMGAGDVTMLGQEI 467


>gi|170700184|ref|ZP_02891202.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
 gi|170134916|gb|EDT03226.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 145/430 (33%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA A+VVS+A    +       +  + +V      L+       G    
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            EG+     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDN---------PRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNK 458
             D  ++T+              +   +    +    P F+    +  +A+     +   
Sbjct: 382 TVDALVLTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVATVDDVPDALA---GVARN 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|332885965|gb|EGK06209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas mossii
           DSM 22836]
          Length = 444

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 134/393 (34%), Gaps = 46/393 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+   +G    I          
Sbjct: 94  EFAKRYT---SAKMICITGSNGKTTTTSLIYHILKSAGLN---VGLGGNIG--------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++     +  +E SS  L+   +   K       N+  DH+D +   
Sbjct: 139 -------RSFARQVAEDNFDYYVLELSSFQLEN--MYSFKADIAILLNITPDHLDRYDHD 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AKMR+ +    +++      D   SKE+ K                    +   
Sbjct: 190 MQKYVDAKMRIVQNQTEEDAFIFWEEDPIVSKEIQKLVSKGKQYTF------ADHKVGNA 243

Query: 283 CAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A     ++ I      F     L  L G   +YN+L +      + I    +   L   
Sbjct: 244 IAYPENNEIKIDTPKSIFIMKEDLLALEGTHNLYNSLASGITAKLLDITDENLRHSLSDF 303

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V        I    A   NS    L++++T      +V+   G D+     
Sbjct: 304 QGVEHRLEKVARVRGIQFINDSKATNVNSCWYALQSMKT-----KVVLILGGTDKGNDYT 358

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            I   +   +  +  +  DN       K+       I   ++  +  +A+  +  +  + 
Sbjct: 359 EIEQLVKDKVRALVFLGVDN------SKLHKFFDGKIDNIVDTSSMKDAVEKSYALAQEG 412

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D ++++     +  +  N E +     + +R++
Sbjct: 413 DTVLLS-PCCASFDLFQNYEDRGDQFKEYVRKL 444


>gi|111221626|ref|YP_712420.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
 gi|111149158|emb|CAJ60841.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
          Length = 467

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 144/437 (32%), Gaps = 41/437 (9%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR +  G +FVA+VG + DGH F              + A       A      P +VV 
Sbjct: 34  SRQVGPGTLFVALVGARSDGHDFAA-----------AAVAAGAPAVLAARPLGVPAVVVA 82

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +    L+  A+ +       ++AVTG++GK++    +  +    G +    G  +     
Sbjct: 83  DPSAALAALAAHVRDIARATVVAVTGSAGKTTTKDLLADLLAELGPTVAAPGSFNNEIGL 142

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 T P   ++              + + A   G         +   G+  N+G  H
Sbjct: 143 PLTLLRTEPDTAFV-------------VLEMGARGLGHIATLCAVARPSVGAVLNVGSAH 189

Query: 217 IDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           +  +   +     AK  L E     +   I+ ADD     +  RA      V++ G    
Sbjct: 190 VGEYTDGRLGIAAAKGELAEA---AQDAVILNADDPLVAAMAPRARG---EVITFGEDAA 243

Query: 276 FIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                    +      +  +   G+       L G  QV NAL AA + + +G+  A   
Sbjct: 244 ADVRGAGVRVDPLGHASFDLLAGGERHRVTLGLVGAHQVPNALAAAAVALRLGLSPARTA 303

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCG 391
             L            V   + G  +  D Y     S+   L  +  +   GR I V G  
Sbjct: 304 AALGAARARSRWRMEVTRTAAGVVVVNDAYNANPESMRAALATLVDMRGAGRAIAVLGGM 363

Query: 392 GDRDQGKRPIM---GKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           G+            G++A+    D  I      R             G   ++   +  E
Sbjct: 364 GELGDAADDAHDALGRLAVRLGIDQVIAVGPAARRIHLAASLEGSWDGESRWVADAD--E 421

Query: 448 AIRTAIEMLNKQDVLVV 464
           A+ T + +    DV++V
Sbjct: 422 AVATVVALARPDDVVLV 438


>gi|314978259|gb|EFT22353.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA2]
 gi|315088657|gb|EFT60633.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA1]
          Length = 471

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 154/431 (35%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH   P  +A GA  +VVSSA         IR + P LV  +          +  A+ + 
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALML 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     +++ GT GK++    V  +   +G                 D      SP+  
Sbjct: 114 GR---EGVSIAGTHGKTTTTGMVATMLDCAGA----------------DPSYVIGSPLAA 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L       V  + S     Q+    +       TN+  DH+D   T QAYF+  
Sbjct: 155 TGMSSHLGGGEAFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNK 288
           + +     P+    +  ADD  + E+  R  +    RV++ G  +   + L  +      
Sbjct: 210 VSMATR--PEVRYVVTNADDPGAAELACRLESIGTVRVVTYGESEQAEVRLVDLDLNGTT 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+            +PG + + NA  A  +   +GI    +L  +        RF+ 
Sbjct: 268 ASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQL 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           VG  +    ++ DYAH    L   L   R +    GR+I  F                 A
Sbjct: 328 VGRVAD-VSVFDDYAHHPTELRATLGAARRVVTGQGRVIACFQPHLFSRTRDFAGEFGSA 386

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD  IV+D  P  EDP      E +   +I          ++ +      E +   D
Sbjct: 387 LTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGD 446

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 447 LVITLGAGDVT 457


>gi|328676147|gb|AEB27017.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida Fx1]
          Length = 451

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 127/362 (35%), Gaps = 32/362 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT GK++ +S +  +  +                   D   +      +  A S +
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQL------------------DKHSSFVVGGVVKYADSNI 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EA            +       TN+  DH+  +      +   +  F + 
Sbjct: 148 QVNGTDKLVIEADESDAS---FLFLSPQVVIITNIDLDHMATYNNS---YQTLLENFTDF 201

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + KES   IY   DD   ++++ + +     V S G+     + +     I       I 
Sbjct: 202 VSKESVKSIYLCVDDQGCRDLLAKYNQLDKNVTSYGFSINADVQIYDYHIIDEITHFKIR 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN 352
            +G D  F   LPG++ V NA      C+ +G     +   L K+  V  RF+      +
Sbjct: 262 YKGDDLSFKLQLPGKYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVIS 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                +  DY H    +   +  +R    + +II VF                 AL LAD
Sbjct: 322 GHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPEALSLAD 381

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+       E         +I  G+ G++       AI    ++ N+  V+++ G G 
Sbjct: 382 QLILLPTYSAGEQIIKGAESQDIAKGLSGYLLADGFDHAIYFLEKLANENTVILIQGAGD 441

Query: 470 ET 471
            T
Sbjct: 442 VT 443


>gi|260220017|emb|CBA27134.1| UDP-N-acetylmuramate--L-alanine ligase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 401

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I +V      L+       G      +A+ GT GK++  S V  +   +GL      PT 
Sbjct: 12  IPIVPRALM-LAELMRLKQG------IAIAGTHGKTTTTSLVASVLAEAGLD-----PTF 59

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            I                L  A +        H+ VEA     D   L+ +  +    TN
Sbjct: 60  VIGGR-------------LNSAGANARLGSGEHIVVEADES--DASFLNLL-PVMAVVTN 103

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  DH++ +             F   +P    AI+  DD   +++ ++     C + S G
Sbjct: 104 IDADHMETYGHDFGKLKKAFVDFLHRMPFYGAAILCTDDPAVRDICEQVT---CPITSYG 160

Query: 272 Y-QGKFIHLKKVCAIHNKQQVTISVEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           + +   +    V A+  +   T+         D + +  LPG   V NAL A  + + + 
Sbjct: 161 FNEDAEVRAVNVRAVGGQMHFTVQRRNGVVLPDMEVVLNLPGLHNVLNALSAIAVAVELN 220

Query: 327 IDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I  A V++ L +   V  RF+  G           +  DY H    +   L   R    G
Sbjct: 221 IPDAAVVKALAEFKGVGRRFQRYGDLALPQGGTVTVIDDYGHHPVEMAATLAAARGAFPG 280

Query: 383 RIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           R +V+        R +       K+    AD  ++ +     E P  I A     +   +
Sbjct: 281 RRLVLAFQPHRYTRTRDCFEDFVKVIGAGADAVLLAEVYAAGEAP--IVAADGRSLARAL 338

Query: 441 EKGNRIEAI---------RTAIEMLNKQDVLVVAGKG 468
             G ++E +         + AI+     DVL+  G G
Sbjct: 339 RIGGKVEPLFVDDIAAMPQAAIDNARDGDVLMCMGAG 375


>gi|171060710|ref|YP_001793059.1| cyanophycin synthetase [Leptothrix cholodnii SP-6]
 gi|170778155|gb|ACB36294.1| cyanophycin synthetase [Leptothrix cholodnii SP-6]
          Length = 865

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 136/384 (35%), Gaps = 32/384 (8%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                G+ P  ++AVTGT+GK++    +  I   SGL    +G T+T   +    ++ + 
Sbjct: 468 GHGHDGRIP--LVAVTGTNGKTTATRLIAHILATSGLR---VGMTNTDGVYVNGRQIDSG 522

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YHQT 222
                  A + L    V     E +  G+ +  L   +      TN+G  DH+   Y  T
Sbjct: 523 DCSGPKSARNVLMHPDVDAAVFETARGGVLREGLGFDRCQVAVVTNIGAGDHLGLNYITT 582

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV------------MKRAHNAGCRVLSV 270
            +     K R+  + +     A++ A D     +              R H       + 
Sbjct: 583 VEDLAVLK-RVIVQNVAASGYAVLNAADPICAAMATTCPGQVIFFAADRQHPVMATHRAQ 641

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +  F+   ++ A     + ++S+  +D          FQV NA+ A      +G+D  
Sbjct: 642 GKRCVFVDGDQLVAAEGAWRESVSL--RDIPITRGGLIGFQVENAMAAVAAAWGVGLDWD 699

Query: 331 LVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            V   L             F   + RG  +  DY H  +++  ++  +  +   R  VV 
Sbjct: 700 AVRRGLASFVNDADNAPGRFNVLDYRGATVIADYGHNPDAMRALVSAVDALPGKRRSVVI 759

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              GDR         +I     D  I+  D   R  +  ++   +  G+          E
Sbjct: 760 SGAGDRRDEDIREQTQILGQAFDDVILFQDACQRGREDGEVLRLLREGLSDATRTRRVDE 819

Query: 448 ------AIRTAIEMLNKQDVLVVA 465
                 AI  A+E L   D+ +V 
Sbjct: 820 IYGEFIAIDAALERLEPGDLCLVL 843


>gi|320093974|ref|ZP_08025801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979080|gb|EFW10596.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 457

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 141/408 (34%), Gaps = 38/408 (9%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             +VVS+A    +            VV  + + L+L A+ +        + V G  GK++
Sbjct: 68  AVVVVSTAIRESNPELAAARGRGQRVVHRS-EALALAATGM------RFVGVAGAHGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +  +    +  G            S           S  +L     +++    +  S  
Sbjct: 121 TSGMLAVALRSVGADP---------SVAVGGVVPQFGSGAHLGAGDVFVAEADESDGSFL 171

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S                  TN+  DH+D + +++A F A    F   L      +  A
Sbjct: 172 NYS------------PSVEVVTNVEPDHLDRYGSREA-FEAVFAEFASRLVPGGALVACA 218

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +D  +  +   A   G   ++ G  G+        ++ V +  +     +  +G+     
Sbjct: 219 EDPGASRLASHARERGITTITYGRPGRCAQRPDAAIEDVDSTASGSTARVEWDGQAAVLR 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  V NA  A     A+G+    +   L        RFE  G      R++ DYA
Sbjct: 279 LAVAGEHNVLNATAALLAGAALGLGLPEMAAGLASFTGTARRFEERGRVG-SRRLFDDYA 337

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +   L+  R +   G + VVF                 AL  AD  +VTD     
Sbjct: 338 HHPTEVAAALRQARVVAGAGGVTVVFQPHLYSRTRIFAARFAEALAAADHVVVTDVYAAR 397

Query: 423 EDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           EDPE       I   +PG +   +  EA RT   ++++  +L+  G G
Sbjct: 398 EDPEPGVDSTLITSALPGSLHVPDMHEAARTGAGLVDEGGILITMGAG 445


>gi|313791784|gb|EFS39895.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA1]
 gi|313802129|gb|EFS43361.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA2]
 gi|313838461|gb|EFS76175.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL086PA1]
 gi|314963082|gb|EFT07182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA1]
 gi|315077546|gb|EFT49604.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA2]
 gi|327452866|gb|EGE99520.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL092PA1]
          Length = 471

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 153/431 (35%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH   P  +A GA  +VVSSA         IR + P LV  +          +  A+ + 
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALML 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     +++ GT GK++    V  +   +G                 D      S +  
Sbjct: 114 GR---EGVSIAGTHGKTTTTGMVATMLDCAGA----------------DPSYVIGSSLAA 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L       V  + S     Q+    +       TN+  DH+D   T QAYF+  
Sbjct: 155 TGMSSHLGGGEAFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNK 288
           + +     P+    +  ADD  + E+  R  +    RV++ G  +   + L  +      
Sbjct: 210 VSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVVTYGESEQAEVRLVDLDLNGTT 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+            +PG + + NA  A  +   +GI    +L  +        RF+ 
Sbjct: 268 ASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQL 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           VG  +    ++ DYAH    L   L   R +    GR+I  F                 A
Sbjct: 328 VGRVAD-VSVFDDYAHHPTELRATLGAARRVVTGQGRVIACFQPHLFSRTRDFAGEFGSA 386

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD  IV+D  P  EDP      E +   +I          ++ +      E +   D
Sbjct: 387 LTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGD 446

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 447 LVITLGAGDVT 457


>gi|254821552|ref|ZP_05226553.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           intracellulare ATCC 13950]
          Length = 492

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 90/436 (20%), Positives = 145/436 (33%), Gaps = 69/436 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           GA A++ + A   +     + +     P+++        ++ A  + G+     L VTGT
Sbjct: 73  GATAVITTHAAIPKTNPELVEARRRGIPVIL------RPAVLAKLMDGR---TTLMVTGT 123

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +    Q  G                 D        +  A   ++  S    
Sbjct: 124 HGKTTTTSMLIVALQHCGR----------------DPSFAVGGEMGEAGTNAHHGSGDCF 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               + S   L ++            TN+  DH+D++ +  AY +     F + L     
Sbjct: 168 VAEADESDGSLLEY-----TPNVAVVTNIETDHLDFYGSAGAYVDV-FDAFVDRLAPGGA 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVT------- 292
            ++  DD  +  + +R    G RVL  G      G+ +    +       +         
Sbjct: 222 LVVCVDDPGAAALARRTAELGIRVLRYGSGASLPGEPLAATLLSWQQQGTEAVAQIQLAP 281

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E +       +PG     NA+ A    + IG     VL+ L     V  RFE VGT
Sbjct: 282 DLDPEQRPRVMRLSVPGRHMALNAMGALLAALEIGAPVDAVLDGLAGFEGVRRRFELVGT 341

Query: 352 NSRG--GRIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKI 405
              G   R++ DYAH    +   L  +RT+      GR I VF                 
Sbjct: 342 AGNGQPVRVFDDYAHHPTEIVATLAAVRTLLEQSGDGRSIAVFQPHLYSRTKAFAEEFGH 401

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEM 455
           ALD AD   V D     E P       + G+ G     +    +R              +
Sbjct: 402 ALDAADEVFVLDVYGAREQP-------LAGVSGASVAEHVSVPVRYLPNFSAAAEQVAAV 454

Query: 456 LNKQDVLVVAGKGHET 471
               DV+V  G G  T
Sbjct: 455 AGPGDVIVTMGAGDVT 470


>gi|307328984|ref|ZP_07608152.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
 gi|306885346|gb|EFN16364.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
          Length = 474

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 92/436 (21%), Positives = 145/436 (33%), Gaps = 47/436 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      IA  A  +VVSSA    +          I VV  +       A+ +
Sbjct: 56  GATVHIGH--AAGNIAADATGVVVSSAIRADNLELVTAHERGIAVVHRSDA----LAALM 109

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G  P   +AV GT GK++  S +    +  GL    +     I                
Sbjct: 110 DGSRP---IAVAGTHGKTTTTSMLAVSLRTLGLDPSYV-----IGG-------------D 148

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L    S            EA       H+            N+  DH   + +      A
Sbjct: 149 LDAPGSSARHGDGEIFVAEADESDRSFHKYA---PEVAIILNVELDHHANYASMDEI-YA 204

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAH--NAGCRVLSVG-YQGKFIHLKKVCAIH 286
               F   +      +I AD + ++E+  R        RVL+ G  +   + +  +    
Sbjct: 205 SFETFVGRIRSGGALVISADQSGARELTARVSGGEEPPRVLTYGEDESADVRVLAIEPHG 264

Query: 287 NKQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              +VT+    S+ G +  F   +PG     NA+ A     A+G+ +  +   L     V
Sbjct: 265 LTSEVTVRLAESLGGAEITFTVSVPGRHYALNAVAALTAGAALGVPAGELAPALASYTGV 324

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPI 401
             R +  GT + G ++   YAH    +   L+ IR     GR++VVF         +   
Sbjct: 325 KRRLQLKGTAA-GVQVIDSYAHHPTEIAADLEAIRGGAGEGRVLVVFQPHLFSRTQELGT 383

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               AL LAD ++V D  P  EDP        +             + +R         M
Sbjct: 384 EMGEALALADASVVLDIYPAREDPVPGITSGLVIDAAARHGADVTAEHDRNAVPELIAGM 443

Query: 456 LNKQDVLVVAGKGHET 471
               D+++  G G  T
Sbjct: 444 AKPGDLVLTMGAGDVT 459


>gi|323527429|ref|YP_004229582.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
 gi|323384431|gb|ADX56522.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
          Length = 467

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 137/434 (31%), Gaps = 61/434 (14%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A     GA A+VVS+A    +       +  I +V      L+       G      
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVM-LAELMRLKQG------ 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S V  +    GL      PT  I                  + +S  
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLISAG 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++  +       +           +  +    TN+  DH+D +    A        F   
Sbjct: 147 ANARLGTGDFIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISV 295
           LP    A++  DD   KE++         ++  G+          V A   K   T +  
Sbjct: 207 LPFYGIAVLCVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVQARDGKMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTN 352
           +    D    LPGE  V NAL A  +   + +  A +   L   + V  RF+    V   
Sbjct: 264 DAAPLDITLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVI 323

Query: 353 SRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
           + G       +  DY H    +   +   R    GR +V+ F                  
Sbjct: 324 ADGQAAGTYTLVDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKV 383

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE------------AIRTAIE 454
           L   D  ++T+     E P  I A     +   +    ++E            A+   + 
Sbjct: 384 LSTVDALVLTEVYSAGEAP--IVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAVV- 440

Query: 455 MLNKQDVLVVAGKG 468
                DV++  G G
Sbjct: 441 --RDGDVVITMGAG 452


>gi|172040884|ref|YP_001800598.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium urealyticum
           DSM 7109]
 gi|229486485|sp|B1VHC3|MURC_CORU7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171852188|emb|CAQ05164.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium urealyticum
           DSM 7109]
          Length = 487

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 148/466 (31%), Gaps = 74/466 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKED---GHLFIPQAIAQGA---EAIVVSSAYSLQD---FSATI 86
           DSR +      +A+     +   GH      +  GA     +V S A   +D    +A  
Sbjct: 44  DSRSV------LALRAAGAEVAIGHD--AANVTGGAELPTVVVTSFAAIPKDNPELTAAR 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSF 145
            +  PI+   +    L                 + GT GK+S  S      Q +G   SF
Sbjct: 96  EAGIPIVRRSDVLAELM---------SDRRAFLLAGTHGKTSTTSMAVVGVQAAGLDPSF 146

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG     +     +                    G   ++    S G            
Sbjct: 147 AIGGQLNRAGTNAHHGT------------------GEIFIAEADESDGSFLSY----SPE 184

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMKRAHNA 263
               TN+  DH+DY+ T++AY  A    F   +      +   DD    +     RA   
Sbjct: 185 VAVITNIEPDHLDYYGTEEAYV-AIFDEFATKVTPGGYLVCCLDDPGAAALAARVRAAGT 243

Query: 264 GCRVLSVGYQGKFIHLKKV-----------CAIHNKQQVTISVEGKD---FDFLFPLPGE 309
              VL  G +        +            A     +V  ++ G++    D    +PG 
Sbjct: 244 APTVLGYGSRAAADQHPDIPAAAIIEEMIPDARGTAAKVRFNLPGQEERYEDIRVAIPGA 303

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N + A      +G D   V+  +     V  RFE+ G    G R+Y DYAH    +
Sbjct: 304 HMTLNGVAAITGGALLGADLEKVIAGVADFDGVRRRFEYHGEAG-GVRVYDDYAHHPTEV 362

Query: 370 EMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +L   + +     +GRII VF                 AL LAD  ++ D     E P
Sbjct: 363 TAVLTAAKELVEATDAGRIIAVFQPHLYSRTMNFASEFARALSLADEVVLLDIFGAREQP 422

Query: 426 EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +     I G     E   + +        I +    DV++  G G
Sbjct: 423 VEGVDSRIIGEKLTCEWHFQPDFSAVAEQVIGIAKPGDVVLTIGAG 468


>gi|257454702|ref|ZP_05619958.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
 gi|257448012|gb|EEV22999.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
          Length = 504

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 144/420 (34%), Gaps = 50/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVSSA    +       +  I VV      L       +G      +AV G  GK+
Sbjct: 99  ADVVVVSSAIDHTNPEIQAALSGRIPVVRRA-DMLGELMRYRHG------IAVAGAHGKT 151

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   +GL      PT  I     +      S       ++       + +  
Sbjct: 152 TTTSLLTMILTEAGLD-----PTYVIGG-KLNASGKNASLGQSRYLVAEADESDASFL-- 203

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +A   TN+ +DH++ +        A    F + +P    A++ 
Sbjct: 204 -------------SLRPMAAIVTNIDQDHMETYGGSFDKLKAAYVQFLQNMPFYGLAVLC 250

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   KE+          VL+ G +    +    V A   K   T+  + ++       
Sbjct: 251 GDD---KELYGLIDKIARPVLTYGLEKHNDVQAIDVVADGTKTHFTVLRKDREPLPITLN 307

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-----FVGTNSRGGRIYV 360
           +PG   VYNAL A  +    G+    + + ++K   V  RFE      V   +    +  
Sbjct: 308 IPGIHNVYNALAAITISTDEGVSDEAICQAVKKFAGVGRRFENNGNYPVKDGAGDVLLID 367

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    + M +K  R +    R++++F                  L   D+ ++ D  
Sbjct: 368 DYGHHPTEVAMTIKAARQSYPDRRLVMIFQPHRFTRTRDCFDDFVDVLSQVDVLMLLDVY 427

Query: 420 PRSE------DPEKIRAEII---HGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
              E      D   +   I       P  +   +  + IR  +  ML   D+L+  G G+
Sbjct: 428 SAGEAVIEGADSRSLARTIRTRGQVEPIMLNINDMDQ-IRQVLGSMLKGNDLLITQGAGN 486


>gi|33519617|ref|NP_878449.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
 gi|44888181|sp|Q7VQI7|MURC_BLOFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33517280|emb|CAD83664.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
          Length = 480

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 151/431 (35%), Gaps = 51/431 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I Q    +V+SSA  + +          I V+    K LS      YG    
Sbjct: 70  GHR--DSNINQEINIVVISSAIDINNPEVQQAKRLKIPVIHRV-KILSELMRYKYG---- 122

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S +  I   +GL    +      S                     
Sbjct: 123 --IAIAGTHGKTTTVSMLTNIYVEAGLDPTFVNGGIIRSQGVSARLGYGND--------- 171

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                        A S   D+  L  +  +    TN+  DH++ +     Y       F 
Sbjct: 172 -----------FIAESDESDKSFLR-LCPVVAVITNIDTDHMNTYHQNFEYLQEVFIKFL 219

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++ R +    ++++ G+       + K      K   TI 
Sbjct: 220 DKLPMYGYAVVCIDDPVVRKILPRINR---KIITYGFSKDATLCIVKYYQYREKSNFTIL 276

Query: 295 V-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
           +   K+   +   PG     NA  +  + I  GI   ++L+ +        RFEF+G   
Sbjct: 277 IKNNKELQVVLNTPGYHNALNAAASIAVAIEEGIRDTVILKSMSNFTGTNRRFEFLGNYP 336

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N R G+  +  DY H    L   +  IRT  +  R+++VF         +      
Sbjct: 337 LNIINGRVGKVMVIDDYGHHPAELRSTIIAIRTGWSDHRLVMVFQPHRFTRTHELYDNFV 396

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLN 457
             L   D+ ++ D     E P      + +   I+       I   N    ++  + +L 
Sbjct: 397 RVLSTVDVLLMLDIYSAGEQPIMGINAQSLCDSILKYAKVQPIFVQNECFLLKFLMNLLR 456

Query: 458 KQDVLVVAGKG 468
            +D+L++ G G
Sbjct: 457 DKDLLLIQGAG 467


>gi|172059550|ref|YP_001807202.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           MC40-6]
 gi|229486473|sp|B1YSS5|MURC_BURA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171992067|gb|ACB62986.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 145/430 (33%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA A+VVS+A    +       +  + +V      L+       G    
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            EG+     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDN---------PRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNK 458
             D  ++T+              +   +    +    P F+    +  +A+     +   
Sbjct: 382 TVDALVLTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVASVDDVPDALA---GVARN 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|73542270|ref|YP_296790.1| cyanophycin synthetase [Ralstonia eutropha JMP134]
 gi|72119683|gb|AAZ61946.1| Cyanophycin synthetase [Ralstonia eutropha JMP134]
          Length = 878

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 151/428 (35%), Gaps = 39/428 (9%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +GA   V +    L        +  P+   +VD              G+ P  ++ +TG
Sbjct: 437 QRGAIVEVNAGPGLLMHLKPAEGTPRPVGRAIVD---HLFPEADDTYPGRIP--VVGITG 491

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GK+ VA  V ++ Q SG      G   +   F     +              L ++ V
Sbjct: 492 TNGKTVVAKLVARLLQLSGK---HTGLACSDGLFLDRRLVQGGDRANWDAGHRILMNRAV 548

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNL-GRDHI-DYHQTQQAYFNAKMRLFEELLPK 240
                E  S  +    L   +   G  TN    DH+ DY+   +      +R   +++ K
Sbjct: 549 EAAVFENDSGAILSEGLVYDRCQVGVVTNFDTPDHMGDYYVEDEDRMYNVLRTQIDVVLK 608

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISV 295
              A++ A D     V++ A  +   V+  G             K   A+  +    +  
Sbjct: 609 NGAAVLNARDE---RVVEMAELSDGDVIFFGLSADLPAIVAHRAKGKRAVFVRDGKVVLT 665

Query: 296 EGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--VVPG 344
            G               +     FQV N L A     A+GI + L+   +       V  
Sbjct: 666 TGNSETPLTDVAAIPVTYAGRVSFQVENVLAAVATGWALGISNDLIRAGIVTFDVGQVDV 725

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
              F      G  + VD AH + +LE +   +    + R ++V+G G  R        GK
Sbjct: 726 PGRFTLFERNGATVIVDDAHNAPALEALATALDRFPAERRMIVYGAGVQRRDEDMVRQGK 785

Query: 405 IALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEML 456
           +     D   + +D       P +E    ++  +  G  +   I++G R +AI TA+  L
Sbjct: 786 VIGATFDRVFLCEDRSVKGALPDAEARALLKQGLYEGRRVTKIIDEGTRQDAIETALGQL 845

Query: 457 NKQDVLVV 464
              D+LV+
Sbjct: 846 VAGDLLVL 853


>gi|282854257|ref|ZP_06263594.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|282583710|gb|EFB89090.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|314923244|gb|EFS87075.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL001PA1]
 gi|314967011|gb|EFT11110.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA2]
 gi|314980967|gb|EFT25061.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA3]
 gi|315091698|gb|EFT63674.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA4]
 gi|315093068|gb|EFT65044.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL060PA1]
 gi|327327831|gb|EGE69607.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL103PA1]
          Length = 471

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 153/431 (35%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH   P  +A GA  +VVSSA         IR + P LV  +          +  A+ + 
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALML 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     +++ GT GK++    V  +   +G                 D      SP+  
Sbjct: 114 GR---EGVSIAGTHGKTTTTGMVATMLDCAGA----------------DPSYVIGSPLAA 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L       V  + S     Q+    +       TN+  DH+D   T QAYF+  
Sbjct: 155 TGMSSHLGGGEAFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNK 288
           + +     P+    +  ADD  + E+  R  +    RV++ G  +   + L  +      
Sbjct: 210 VSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVVTYGESEQAEVRLVDLDLNGTT 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+            +PG + + NA  A  +   +GI    +L  +        RF+ 
Sbjct: 268 ASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQL 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           VG  +    ++ DYAH    L   L   R      GR+I  F                 A
Sbjct: 328 VGRVAD-VSVFDDYAHHPTELRATLGAARRAVTGQGRVIACFQPHLFSRTRDFAGEFGSA 386

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD  IV+D  P  EDP      E +   ++          ++ +      E +   D
Sbjct: 387 LTLADRVIVSDIYPAREDPIPGVTGEMVHDAVLAAGGDSRYVPDKQDLPEALAEEVRPGD 446

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 447 LVITLGAGDVT 457


>gi|152979585|ref|YP_001345214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus succinogenes
           130Z]
 gi|189028967|sp|A6VQN2|MURC_ACTSZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150841308|gb|ABR75279.1| UDP-N-acetylmuramate--alanine ligase [Actinobacillus succinogenes
           130Z]
          Length = 476

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 136/424 (32%), Gaps = 42/424 (9%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI  A      A  +VVSSA    +          I V+   +  L+      +G     
Sbjct: 67  FIGHAATNVENASVVVVSSAIKPDNVEVVAAHEKRIPVIQRAQM-LAELMRFRHG----- 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + +  I  ++GL    +      S+        +         ++ 
Sbjct: 121 -IAIAGTHGKTTTTAMISMIYTQAGLDPTFVNGGLVKSAGTNAYLGAS------RYLIAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + +                ++ +    TN+  DH+D +             F  
Sbjct: 174 ADESDASFL---------------HLQPMVSVVTNIEPDHMDTYHGDFDEMKRTYVNFLH 218

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    A++ ADDA   E++ +             +  +                I+  
Sbjct: 219 NLPFYGLAVMCADDAVLMELVPQV-GRQVITYGFSEKADYRIENYEQTGFQGHYDVITPA 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NS 353
           G+    L  +PG+    NA  A  +    GI +  +L  L        RF+ +G     +
Sbjct: 278 GERIHILLNVPGKHNALNATAALVVAKEEGIGNDAILAALADFQGAGRRFDQLGEFIRPN 337

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADI 412
               +  DY H    + + ++  R+    R +V VF                  L   D+
Sbjct: 338 GKVMLVDDYGHHPTEVGVTIQAARSGWENRRVVMVFQPHRYSRTRDLFDDFVRVLSQVDV 397

Query: 413 AIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            I+ D  P  E P        +   I + G    I   +  +      +++   D+++  
Sbjct: 398 LILLDVYPAGEQPIAGADSRSLARSIRNLGKVDPIFVADHGQLPEVVDQIIQDGDLILAQ 457

Query: 466 GKGH 469
           G G+
Sbjct: 458 GAGN 461


>gi|121998869|ref|YP_001003656.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
 gi|189028995|sp|A1WYU2|MURC_HALHL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121590274|gb|ABM62854.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
          Length = 486

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 142/416 (34%), Gaps = 44/416 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG +A+VVS+A +  +          I VV    + L+      +G      +AV GT G
Sbjct: 83  QGMDAVVVSTAVTEDNPEVQAARQQRIPVVPRA-EMLAELMRFRHG------VAVAGTHG 135

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +            ++ PT  I                L  A ++       ++
Sbjct: 136 KTTTTSLLASCLAE-----GELDPTFVIGGR-------------LISAGAHARLGAGPYL 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA            +K +  + TN+  DH+  +             F   LP    A+
Sbjct: 178 VAEADESDAS---FLHLKPMMAAVTNVDADHLGTYGGDFEALRRTFIEFLHHLPFYGLAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFL 303
           +  DD   + +          VL+ G+ +   + +  + A  ++ +  I   +G  F   
Sbjct: 235 LCIDDPEVRRLRGEIGRP---VLTYGFSEDADVRVSGMEADGHRTRFRIEEGDGAAFAVE 291

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYV 360
             LPG   V NA  A  L   +G+D A +   L     +  RF+    +        +  
Sbjct: 292 LSLPGRHNVLNAAAAIALARELGVDVAAIQRALSSFQGIGRRFQVYPDIPLAEGAAALVD 351

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH    LE  L+  R      R++VVF         +        L   D  ++T+  
Sbjct: 352 DYAHHPRELEATLQAARAAWPERRLVVVFQPHRYSRTRELFDDFARVLSGTDALVLTEVY 411

Query: 420 PRSE------DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              E      D   + + +   G    I   +  E       +L   DV++  G G
Sbjct: 412 AAGEARLPGADGRALASAVRDRGGAQPIFAESLDEVPGLLAGLLRDDDVVLTLGAG 467


>gi|306820583|ref|ZP_07454214.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551400|gb|EFM39360.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 150/429 (34%), Gaps = 53/429 (12%)

Query: 56  GH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    I   I +    +V ++A    +          I +V+ +  FL           
Sbjct: 51  GHNKDHITSDIDK----VVFTAAVKQDNEEIIKTKELGIDLVERSV-FLGSIMKEY---- 101

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLA 171
            EN +A+ GT GK++  S +  +  ++  +   +  G    I      N     S I+++
Sbjct: 102 -ENSIAIAGTHGKTTTTSMITLVFDKAEKNPTSLIGGMFKNIGG----NVEIGNSDIFIS 156

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y+ S    +                         TN+  DH+DY +      N+ +
Sbjct: 157 EACEYVDSFLQFY-------------------PKVAVITNIEEDHLDYFEDLSQIKNSFL 197

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ- 289
           + F   + +    I   DD   ++ +K   +    V   G+ +G    +  +        
Sbjct: 198 K-FANQVKEGGFVIANGDDENVRDTLK---DCKRNVYYYGFNEGNDFIIDNLEFDDFGYP 253

Query: 290 --QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  + +G   D +   + G+  VYNA  A      + I+   +   +EK   V  RF
Sbjct: 254 CFDIFYANDGVLIDNYKLNVFGKHNVYNATSAIVSACMLDIEKEDIKNAIEKFTGVGRRF 313

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E++G    G R++ DYAH    ++  L  I+++   R   +F                  
Sbjct: 314 EYIGEKD-GVRVFDDYAHHPTEIKSTLDAIKSLKKNRFFSIFQPHTYTRTKALFKEFVEC 372

Query: 407 LDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            D  DIAI  D     E  ++      +  E+           +  + ++   E  N  D
Sbjct: 373 FDETDIAIFADIYAAREPIDETVSSSMLCDEVNRRGKDAYYFDSFDKIVQFLRENANDGD 432

Query: 461 VLVVAGKGH 469
           ++   G G 
Sbjct: 433 LIFTIGAGD 441


>gi|109892723|sp|Q3IFY1|MURC_PSEHT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 151/450 (33%), Gaps = 56/450 (12%)

Query: 48  AIVGNKEDGHLFIPQA-----IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILV--- 94
           A  G +  G      A     I  GAE  +     +++D      S+ I    P ++   
Sbjct: 39  AFEGYRITGSDIAHSAMTDRLIKAGAEVFIGHHENNVKDANVVVVSSAIDETNPEIIAAK 98

Query: 95  ---VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
              V   R+   + A  +  +H    +A+ GT GK++  S +  I  ++GL    I    
Sbjct: 99  AARVPVVRRA-EMLAELMRFRHG---IAIAGTHGKTTTTSLIASIYAQAGLDPTFI-IGG 153

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            ++S   + ++           ++       + +                ++ +    TN
Sbjct: 154 LLNSAGSNAKVGKSD-----FLIAEADESDASFL---------------HLQPMVSVITN 193

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  DH++ +             F   LP    A++  D   + E++ R       V++ G
Sbjct: 194 IEEDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVASELIPRFGRP---VITYG 250

Query: 272 YQGK-FIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                   +       N  + T++  +G+       +PG+    NA  A  +     I +
Sbjct: 251 ESSDADYRMSDFSQSANTCKFTVTNKQGESLTATLNMPGKHNALNATAAIAVAKDQNIAN 310

Query: 330 ALVLEHLEKLHVVPGRFEFVG--TNSRG-GRIYVDYAHTSNSLEMILKNIRT-ITSGRII 385
             +LE L+K   +  RF+  G   N RG   +  DY H  + +   +   R      R++
Sbjct: 311 FAILEALQKFEGIGRRFQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREGWPDKRLV 370

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF 439
           +V+                  L   D  ++ D     E+P      + +   +       
Sbjct: 371 MVYQPHRFTRTRDLYEDFVKVLAEVDQLLLLDVYSAGEEPIVGADSKSLCRSLRQRGKEP 430

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               N  E      + L   D+++  G G+
Sbjct: 431 RHVANSAELASVLADCLQNNDLVLTQGAGN 460


>gi|296160540|ref|ZP_06843356.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
 gi|295889289|gb|EFG69091.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
          Length = 467

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 137/420 (32%), Gaps = 49/420 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+VVS+A    +       +  I +V      L+       G      +A+ GT GK
Sbjct: 64  GANAVVVSTAVRSDNPEVLAARHRRIPIVPRAVM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    GL      PT  I                  + +S  ++  +    
Sbjct: 117 TTTTSLVASVLAAGGLD-----PTFVIGG----------------RLISAGANARLGTGD 155

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              +           +  +    TN+  DH+D +    A        F   LP    A++
Sbjct: 156 FIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISVEGKDFDFLF 304
             DD   KE++         ++  G+          V A   K   T +  +    D + 
Sbjct: 216 CVDDPNVKEILPFVSKP---IIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPLDIVL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRG-----G 356
            LPGE  V NAL A  +   + +  A +   L   + V  RF+    V  +S G      
Sbjct: 273 NLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVSSEGKTNGAY 332

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DY H    +   +   R    GR +V+ F                  L   D  ++
Sbjct: 333 TLVDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKVLSTVDALVL 392

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           T+     E P        +   +           + ++ +  A+  ++   DV++  G G
Sbjct: 393 TEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDGDVVITMGAG 452


>gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
 gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
          Length = 467

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 146/401 (36%), Gaps = 50/401 (12%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AIV+S    L      A ++   PI+            A+R        I+A TGT+GK+
Sbjct: 82  AIVLSPGVPLDTPFMKAALKRQIPIIGE-------MELAARHVDVP---IIAATGTNGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V SF+ ++ +  GL+ F  G   T  +                     +      ++ V
Sbjct: 132 TVTSFLGRMLEDQGLAVFVGGNIGTPLTAY------------------LMGEMKADYLVV 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  LD   ++          N+  DH+D +    AY ++K+R+FE         I+ 
Sbjct: 174 EISSFQLD--TIERFTPEISIILNISPDHLDRYADYSAYIHSKLRIFENQ-GAGQTVILN 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   K   K     G  VL  G +        +        VT   +G+     F LP
Sbjct: 231 DDDIVLK---KTTPPEGTSVLRYGLKKGAGIDAFIENEGILSAVT--EKGRFNLSAFSLP 285

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHT 365
           G   + N L       A+G+    + + +     +  R E V  N  G   +    Y  +
Sbjct: 286 GAHNLENLLAVVLAGQALGLAPEPIQKTINAFKGLSNRLERVCANGHGFLQKKVQFYNDS 345

Query: 366 -SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            + +++  ++ +++      +++   G  +    +P++      +     + +       
Sbjct: 346 KATNVDAAVRAVQSFDKP--LILIAGGRHKGSNYQPLVNACKGHVKGAVFMGES------ 397

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              + AE   G   F       +A++ A  M    DV+++A
Sbjct: 398 -ASLLAEAFTGETPFSLAETMPDAVKKAAHMAESGDVVLLA 437


>gi|311693456|gb|ADP96329.1| UDP-N-acetylmuramate-L-alanine ligase [marine bacterium HP15]
          Length = 481

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 127/400 (31%), Gaps = 45/400 (11%)

Query: 89  NTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             P +V   +R+        + A  +  +H    +AV GT GK++  S +  I   +GL 
Sbjct: 91  ENPEVVAARSRRVPIVPRAEMLAEIMRYRHG---IAVAGTHGKTTTTSLIASILGEAGLD 147

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                PT  I                L  A +     G  ++  EA            + 
Sbjct: 148 -----PTFVIGGK-------------LNSAGTNAQLGGSRYLVAEADESDAS---FLHLT 186

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +    TN+  DH+D +             F   LP    A++  DD Y +E++ R   A
Sbjct: 187 PVISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCVDDGYVQEIIPRISRA 246

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGL 321
                 +         + + +   +    +       D      +PG   V NAL A  +
Sbjct: 247 II-TYGIDNPEADYRAESINSDGLRTHFVVKRPAGRSDLTVELKMPGRHNVLNALAAIAV 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               G+    +   L     V  RF+  G   T      +  DY H    +E +++    
Sbjct: 306 ATDEGVADDAICRGLAGFAGVGRRFQVYGDYQTPKGTVTLVDDYGHHPTEVEAVIRAAHD 365

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAE 431
                R+++++                  L   D  ++ D     E      D   +   
Sbjct: 366 AWPDRRLVMLYQPHRFTRTRDLYEDFVRVLSEVDGLLLMDVYSAGEPAIPGADGRALCRS 425

Query: 432 IIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
           I   G    +   + +E I + +   L   D+L+  G G 
Sbjct: 426 IRQRGQVEPVFVEDNLE-IESLLANVLQDGDLLITQGAGD 464


>gi|315084589|gb|EFT56565.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA2]
          Length = 471

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 155/431 (35%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH   P  +A GA  +VVSSA         IR + P LV  +          +  A+ + 
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALML 113

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     +++ GT GK++    V  +   +G                 D      SP+  
Sbjct: 114 GR---EGVSIAGTHGKTTTTGMVATMLDCAGA----------------DPSYVIGSPLAA 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L       V  + S     Q+    +       TN+  DH+D   T QAYF+  
Sbjct: 155 TGMSSHLGGGEAFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGF 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNK 288
           + +     P+    +  ADD  + E+  R  +    RV++ G  +   + L  +      
Sbjct: 210 VSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVVTYGESEQAEVRLVDLDLNGTT 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+            +PG + + NA  A  +   +GI    +L  +        RF+ 
Sbjct: 268 ASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQL 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406
           VG  +    ++ DYAH    L + L   R +    GR+I  F                 A
Sbjct: 328 VGRVAD-VSVFDDYAHHPTELRVTLGAARRVVTGQGRVIACFQPHLFSRTRDFAGEFGSA 386

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD  IV+D  P  EDP      E +   +I          ++ +      E +   D
Sbjct: 387 LTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGD 446

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 447 LVITLGAGDVT 457


>gi|68535826|ref|YP_250531.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium jeikeium
           K411]
 gi|109892701|sp|Q4JW94|MURC_CORJK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68263425|emb|CAI36913.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium
           K411]
          Length = 498

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 132/437 (30%), Gaps = 71/437 (16%)

Query: 70  AIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +    +  P+L   +    L                 + GT GK
Sbjct: 76  VVVTSFAAIPQDNPELVGAREAGIPVLRRSDILALL---------LQDRRAFLLAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G    F IG     +     N                    G   V
Sbjct: 127 TSTTSMAVAALQAAGQDPSFAIGGQLNRAGTNAHNGT------------------GEVFV 168

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S G                TN+  DH+DY +T+ AY       F   +      +
Sbjct: 169 AEADESDGSFLSY----SPEIAVVTNIEPDHLDYFKTESAY-REVFEKFAHRIVPGGFLV 223

Query: 246 IYADDAYSKEVMKRA-------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
           +  DD  S  + +         +     V+  G          V      +   ++ EG 
Sbjct: 224 VCLDDPGSAALAEELIAGAEEGNPLPFTVVGYGTAEGCDAHPSVPPAAIIESTEVTAEGT 283

Query: 298 ------------------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                               +     +PG   V NA  A    + +G D   V+  +   
Sbjct: 284 VSALRLTEEVKKAAEEAAGTYSLRVAIPGIHMVLNAAAAVLGSVLLGADVDKVIAGIGGF 343

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQ 396
             V  RFE+ GT  +   +Y DYAH    +  +L   R       GRI+ VF        
Sbjct: 344 DGVRRRFEYHGTR-QDVEVYDDYAHHPTEVAAVLAAARQRVEARGGRIVAVFQPHLYSRT 402

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRT 451
                    AL LAD  ++ D     E+P +     I    I     ++ + +  +    
Sbjct: 403 MNFADEFAEALSLADQVVLLDIFGAREEPVEGVDSRIIGNKIDASTDWVFEPDFSKVSSV 462

Query: 452 AIEMLNKQDVLVVAGKG 468
              ++   D+++  G G
Sbjct: 463 VAGLVQPGDMVLTIGAG 479


>gi|289522908|ref|ZP_06439762.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503932|gb|EFD25096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 50/399 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+SS  S Q     +  N  +L+              ++      I+ VTGT+GKS+ +
Sbjct: 64  VVLSSGISPQSLPVEMAKNAGVLI-------QGEL-DFVFPFLTGKIIGVTGTNGKSTTS 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  +  + G  +   G                         L+  + Q +  ++ E S
Sbjct: 116 ALIAHLLSKLGYKTALAGNFG--------------------FPLADFAKQDLDFIAAEIS 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L  H  +         TN+  DH+D+H + +AY  +K R+ + L           D 
Sbjct: 156 SFQL--HWANRFSCHIAVVTNICPDHLDWHGSFKAYVESKKRIIDLLSSDGYCVYQNKD- 212

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPL 306
              +E+++     G  +            ++   I +  +  +  E +D       + PL
Sbjct: 213 ---RELLRTNGCRGAVLRWASDCSTGKCEEQDEIILHDSEAYLRTESRDIKLFSYSILPL 269

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V N  +A      +G D+      L     +P R E VG   + G  ++D +  +
Sbjct: 270 YGRHNVENTAMAMTAVYYLGCDAERTSHLLSDFKNLPHRCEKVGE--KKGITFIDDSKGT 327

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           N +   +  I +I   ++I++ G G      +     K     A +           +  
Sbjct: 328 N-VASSITAITSIPGTKVIILGGKGKGEQYDELAKAVKAHARGAVLL--------GAEKG 378

Query: 427 KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I   +   G   +I   +  EA+  A  M    D++++
Sbjct: 379 AISEALESAGFRNYILVSSMEEAVYCAFNMACPGDIVLL 417


>gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
 gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
          Length = 445

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 166/420 (39%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A++ G + + +S   S +             V+ +         
Sbjct: 47  GKIFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADVVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   + L  +G       +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 148 ----PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F      +   ++ ADDA+ + + +       +  S+ ++  F   ++   
Sbjct: 202 DYAHTKDKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGR 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +  IS +        PL G     N + A  LC AIG+    +LEH++    +P 
Sbjct: 256 LKQGNEDLISTQD------IPLQGLHNAANVMAAVALCEAIGLPREALLEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   
Sbjct: 310 RVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A     + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 365 LAGKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|124007585|ref|ZP_01692290.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
 gi|123987068|gb|EAY26824.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
          Length = 525

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 139/403 (34%), Gaps = 51/403 (12%)

Query: 82  FSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC-- 137
           F   I +N  ++ V+    ++    A R+    P+  ++ +TG+ GK+SV  F+ +I   
Sbjct: 142 FGWLILANFVLIPVEQRIAQWYYADARRIIKSMPQLKVIGITGSYGKTSVKHFLTRILSE 201

Query: 138 -----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                   G  +  +G T TI +  +                       +    + A   
Sbjct: 202 KYNVVMTPGSYNTPMGVTITIRNHIKPI-------------------HEIFVCEMGAKQI 242

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +   +      G  T +   H+D   + +     K  L + L PK+    +  D  Y
Sbjct: 243 GDIKELCNLAHPQIGILTAVADQHLDTFGSIENIQKGKFELIDAL-PKDGVGYLNFDYEY 301

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQ 311
            K     AH       S+         + +       Q ++  + +   +    L GE  
Sbjct: 302 VKNHSPIAH-VENHAYSLHQPDADYQARDLQYTAKGMQFSVYHKNEKVMELETKLMGEAN 360

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
           + N LV   + +   +    +   ++ L  V  R E    N  G  I  D +       +
Sbjct: 361 MSNILVCCAVALRFDVPIKNIQFAVKNLQPVKHRMEL-KRNPGGITILDDAFNSNPAGAK 419

Query: 371 MILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           M L  ++ I  G+ +++        +++     ++G+   +  D AI+    P+   P  
Sbjct: 420 MALNVLKQIEGGQKVIITPGMIELAEKEYELNKVLGEQIAEHVDYAILVG--PKQTLP-- 475

Query: 428 IRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLV 463
               I  G+       +R        +A +  +++    DV++
Sbjct: 476 ----IQEGLKNKNYPEDRLYIARNLTDANQHLMKIAKAGDVVL 514


>gi|161511189|ref|NP_813012.2| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
 gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
          Length = 849

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 132/389 (33%), Gaps = 41/389 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   E  I+ + +DSR +      +F A+   + +G  +I +   +G 
Sbjct: 5   IESIAEYIGARRVGEHEATIDWLLTDSRSLSFPEETLFFALPTKRNNGARYISELYDRGV 64

Query: 69  EAIVVSS---------------------AYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
              VV+                      A    +   +I   +  L+V N  K L   A 
Sbjct: 65  RNFVVTEEDFKRMENGEWKMENAMQQDGAQPTPNSRLSILDFSNFLIVANPLKALQKLAE 124

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  
Sbjct: 125 AHRENFKIPVIGITGSNGKTIVKEWLHQLLS--------PDRCIVRSPRSYNSQIGVPLS 176

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           ++    L+  +  G+    +          R+  IK   G  TN+G  H +   + Q   
Sbjct: 177 VW---QLNEEAELGIFEAGISEMGEMGALKRM--IKPTIGILTNIGGAHQENFFSLQEKC 231

Query: 228 NAKMRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             K+ LF++        I   D+   S  V K    A     S     + +++ KV    
Sbjct: 232 MEKLTLFKDC----DVVIYNGDNELISNCVAKSMLTAREIAWSCKDIERPLYISKVTKKE 287

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   +       D  F  P   +  + NAL     C+ +   +  + E + +L  +  R 
Sbjct: 288 DHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRL 347

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           E     +    I   Y     SL++ L  
Sbjct: 348 EVKEGKNNCILINDSYNSDLASLDIALDF 376


>gi|89074169|ref|ZP_01160668.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
 gi|89050105|gb|EAR55631.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
          Length = 487

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 137/417 (32%), Gaps = 44/417 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  +V S+A S ++      + + I +V    + L+      +G      +A+ GT G
Sbjct: 80  QGASVVVASTAISKENPELVAATESRIPIVRRA-EMLAELMRYRHG------IAIAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  +   QI   +GL    +      S+        +         ++       + +
Sbjct: 133 KTTTTALTTQIYSEAGLDPTFVNGGLVKSAGTNARLGCS------RYLIAEADESDASFL 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +             F   LP    A+
Sbjct: 187 ---------------HLQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++ R                          H      +  +    +    
Sbjct: 232 MCIDDPVVRELLPRVGRPMI-TYGFAEDADVRITNYTQTGHQGHFTVLRKDKPALNITLN 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDY 362
            PG+    NA  A  +    G+D   ++  L +      RF+ +G   T +    +  DY
Sbjct: 291 TPGKHNALNATAAIAVATEEGVDDEAIMRALIEFEGTGRRFDHLGEFETGNGNVMLVDDY 350

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H  + +++ ++  R      R++++F                  L+  D+ ++ D    
Sbjct: 351 GHHPSEVDVTIQAARAGWADKRLVMIFQPHRYSRTRDLYDDFANVLEQVDVLVMLDVYSA 410

Query: 422 SEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P        +   I       P F+ +   + AI     +++  D+++  G G 
Sbjct: 411 GEAPIAGADGRALCRTIRSRGKIDPIFVPEAEELPAILA--NIIHNDDLVLTQGAGD 465


>gi|332976917|gb|EGK13739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 460

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 106/320 (33%), Gaps = 22/320 (6%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            + + +S  I  +  ++ V + ++ L         +     + VTG++GK++       I
Sbjct: 70  IAPKGWSRRIPPSHAVIEVSDPKQALWKLVHWQRAQSRAIFIGVTGSAGKTTTKEMAASI 129

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                     +   +  S    +  L  P                V  + +  +  G  +
Sbjct: 130 LSTKYKVLKSVANNNLYSLMPGNLILLHP-------------KHQVVVLEMGMAGFGNIR 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            +    K   G  TN+G  H+     +      AK  L + L PK    I+ ADD  SK 
Sbjct: 177 KQCLVAKPSLGIVTNVGEAHVGKLGHSLANVARAKQELIDGLAPK-GTLILNADDPGSKR 235

Query: 256 VMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +         +V+++G +    I   +V    N     I        +  P+ G   +YN
Sbjct: 236 L--NTRRFRGQVITLGIEKPATIRATRVKYTKNGMSFYI----GKVPYHIPVWGRHNIYN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  +   + + +  + + L+       R + +        I   Y    +++   LK
Sbjct: 290 ALAAIAVAKQLNVPTPWIQKGLQNFPAPRMRLQRIKGIKNWLLINDCYNANPSAMVAGLK 349

Query: 375 NIRTITSGRIIVVFGCGGDR 394
            +  +   +  V        
Sbjct: 350 VLMRVAGKKQSVAVLGDMHS 369


>gi|299133064|ref|ZP_07026259.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
 gi|298593201|gb|EFI53401.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
          Length = 1310

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 138/433 (31%), Gaps = 50/433 (11%)

Query: 50  VGNK-EDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
            G     GH    +      GA  +V S A    +      +    + +    + L L  
Sbjct: 48  KGATVFHGHHADHV-----NGAGMVVYSDAIPFSN-PELAEARLRQIPIAKRAQCLGLLL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                      +AV+G+ GKSS  + +  I + SG           +S           +
Sbjct: 102 EH------SRAVAVSGSHGKSSTTTMIANILRASGQD---------VSHVVGAPSECLDN 146

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 A     ++                  L  +        N+  DHI+++ + +  
Sbjct: 147 IQGRCGASDIFVAEACEAFQN-----------LAPLSPDIALILNIDDDHIEHYGSVEKL 195

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAI 285
             A  R F   +      I+  +DA ++++   A +A   V + G+   F  H   +   
Sbjct: 196 HGA-FRDFAGRIRNGGALIVNGEDARARDI---AASAIAPVTTFGFAAGFDVHAAHIAMD 251

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                 ++   G +       +PG   + NAL     C+A+ +  A +    E+   V  
Sbjct: 252 GGGSTFSVIAYGAELGTLRLKVPGRHMIGNALACVAACLALDVSFAGIQRGFEQFTGVSR 311

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIM 402
           R++  G    G R+  DYAH    L   L+  R I +  G + + F         +    
Sbjct: 312 RWQMHG-EVHGVRLIDDYAHHPTELRACLETARLIAAHSGSLCIAFQPQLYSRTRRLLGE 370

Query: 403 GKIALDLADIAIVTDDNPRSED------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               L   D   + + +   E          +   +           +  E ++    + 
Sbjct: 371 YVEVLKGFDRIGLVEIDGAGEKNTFGVSVHHLADTLREAGKTVCAFPDAGELLQNISSLA 430

Query: 457 NKQDVLVVAGKGH 469
           +  D L+ AG G+
Sbjct: 431 STGDTLIFAGAGN 443


>gi|295102128|emb|CBK99673.1| UDP-N-acetylmuramate--L-alanine ligase [Faecalibacterium
           prausnitzii L2-6]
          Length = 461

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 128/408 (31%), Gaps = 39/408 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S+A +  +      ++  I  V+ +             +  +  + V+GT GK
Sbjct: 74  GADLVVYSAAIAKDNVELNAAASYGITTVERSVLL------GYVSRLYKQSICVSGTHGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +    + +G       P++ I            +                  + 
Sbjct: 128 TTTTSMITTALELAGRD-----PSAVIGGKLPLIHGYGKAGKG-------------DDIV 169

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EA            +        N+  DH+DY+ +       K       L  +     
Sbjct: 170 IEACEFSE---TFLKLTPYLSVVLNIDNDHLDYYGSMGEL---KFAFKRFALMTQFMIFA 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFL 303
            ADD  + +VM   +    RV + G      +       +        ++          
Sbjct: 224 NADDKNTMDVM---YTLDRRVCTFGIDNDGDYQAINVQEYKPGFFEFDLKEWSKVTGHIR 280

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   +YNAL    +C   G+                 RFE  G    G  +  DYA
Sbjct: 281 LAVPGRHNIYNALAMCAVCRFAGLTVEQCAAAAASFKGAGRRFEVYG-ECNGAVVVDDYA 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    L   L   + +   R+I V                   L + D+A++T      E
Sbjct: 340 HHPTELRATLNTAKELGYKRLIAVHQPFTYSRTKMLFNDFVDVLKIPDVAVITPIMGSRE 399

Query: 424 --DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             DP    A++   IPG +   +   A     +   + D+++  G G 
Sbjct: 400 PNDPTITSAKLAAQIPGSVLVDSLEAAADWVKQNAREGDLVITLGCGD 447


>gi|319440257|ref|ZP_07989413.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium variabile
           DSM 44702]
          Length = 499

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 92/438 (21%), Positives = 140/438 (31%), Gaps = 72/438 (16%)

Query: 70  AIVVSSA---YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A+V+S A   +   +  A      P+L   +    L   A R         + ++GT GK
Sbjct: 78  AVVISFAAIPHDNPELVAAAEQGIPLLRRSDVLALL--MAGR-------RAVLLSGTHGK 128

Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G+   F IG     +     +                    G   V
Sbjct: 129 TSTTSMAVVGLQAAGMDPSFAIGGQLNRAGTNAHHGT------------------GDVFV 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S G                TN+  DH+D++ T++AY       F   +      +
Sbjct: 171 AEADESDGSFLSY----SPTVAVVTNIEADHLDFYGTEEAYHEVFGA-FAGRVVPGGFLV 225

Query: 246 IYADDAYSKEVMKRAHNAGC------RVLSVGYQGKFIHLKKV----------CAIHNKQ 289
              DD  + E+ +R            RVL  G    F     V                 
Sbjct: 226 TCVDDPGAAELAERVVAGEVELAEGTRVLGYGTAAAFEAHPTVPVGALIVDAGTTPDGGS 285

Query: 290 QVTISVEG-------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           Q  +   G                PG   + NA  A      +G D   V++ +     V
Sbjct: 286 QAAVRFPGAGGSGDDTTRTVTVRTPGRHMLLNATAAVLAGGLVGSDLDEVIDGVAAFDGV 345

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---------ITSGRIIVVFGCGGD 393
             RFE+ GT   G  +Y DYAH    +  +L   R            +GR+I VF     
Sbjct: 346 RRRFEYHGTAG-GVEVYDDYAHHPTEVRAVLSAARDKVAARAAADGVAGRVIAVFQPHLY 404

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII-HGIPGFIEKGNRIEAI-R 450
                       +L LAD A+V D     EDP E + + II   +   +    R   +  
Sbjct: 405 SRTITFAEEFAESLSLADTAVVLDIYGAREDPVEGVTSRIITDRMTVPVVYEERFSDVPE 464

Query: 451 TAIEMLNKQDVLVVAGKG 468
              E+    DV++  G G
Sbjct: 465 RVAEVARPGDVVLTVGAG 482


>gi|16332094|ref|NP_442822.1| UDP-N-acetylmuramate--L-alanine ligase [Synechocystis sp. PCC 6803]
 gi|3122411|sp|P74528|MURC_SYNY3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|1653723|dbj|BAA18634.1| UDP-N-acetylmuramate-alanine ligase [Synechocystis sp. PCC 6803]
          Length = 505

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 146/420 (34%), Gaps = 58/420 (13%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +    ++   I  N PI    +    L   A           + V GT GK++
Sbjct: 120 VVCSTAINEGNLEYQGAIAKNCPIYHRSDILAAL--IAE-------SRGIGVAGTHGKTT 170

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  + + +GL                D  +     +   +  +YL S       V+
Sbjct: 171 TSSLIGYVLKEAGL----------------DPTIVVGGEVDAWQGNAYLGSGEYLVAEVD 214

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++ T          +F          I   
Sbjct: 215 ESDGSLTKH-----HPEIGIVTNIELDHPDHYSTLAEVV----EIFRTFESHCQTLIGCL 265

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           D    ++ +          ++   +         +++    +  +V +   G        
Sbjct: 266 DCGVVRQHLS-------PTITYSLENHPEADYQARQIKRQAHGNEVEVWERGVCLGTMTV 318

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG+  + NAL A  +   +G+D  ++ + +   +    RFE  G    G     DYAH
Sbjct: 319 TLPGDHNISNALAAVAVGRLLGLDFPVIAQAIASFNGAKRRFECKG-YCNGITFIDDYAH 377

Query: 365 TSNSLEMILKNIRT-ITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             + L   L   +  +T G   R++ +F                 A   AD+ ++TD   
Sbjct: 378 HPSELLATLAAAKQKVTHGKYERVVAIFQPHRYSRTHTFMAEFATAFKDADLVVLTDIYS 437

Query: 421 RSE-DPEKIR-AEIIHGI---PGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHI 474
             E +P  IR  ++   +    G +    R+  +R  + ++L   D+ +  G G+    I
Sbjct: 438 AGEQNPYNIRGEDLAKAVGQHHGHVVYQPRLTELREFLPKVLQSGDLALFLGAGNLNQQI 497


>gi|289177338|gb|ADC84584.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 584

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 135/430 (31%), Gaps = 56/430 (13%)

Query: 75  SAYSLQDFSATIRSNTPILV--VDNTRKFLSL---FASRLYGKHPENILAVTGTSGKSSV 129
               +  +S+ I+ + P +V  V N  + +      A  + GKH    + V G  GK++ 
Sbjct: 154 QDAQVVVYSSAIKPDNPEIVAAVANGAQLVHRSDILALLMNGKH---AVTVAGAHGKTTT 210

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  I   +G             S+A    +  P    L    +   +  V       
Sbjct: 211 SSLLAHILMHAGTGE------LADPSYAIGGSIQGPDGTTLDGGHAGKGTVLVAEADESD 264

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S                  TN   DH+D++ T++ Y  A     + +       I+  D
Sbjct: 265 GSFA-------KYHPDIEIITNAEADHLDHYHTEENYHAAFA---DHVTHARRAVIMCVD 314

Query: 250 DAYSKEVMKR-AHNAGCRVLSVGYQGKF------------IHLKKVCAIHNKQQVTISVE 296
           DA +  V++  A     +V++                   I  +   A    +   I + 
Sbjct: 315 DAGALAVLRSLAPEDARKVIAYSTHTADELGDLNGATFVHIASEHESANSGTENFVIDIP 374

Query: 297 ------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                          +PG     NA  A    + +G+D+               RF+  G
Sbjct: 375 AALVGADVALPVSLRIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFLGANRRFQIRG 434

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T S    +  DYAH    +  +LK   R     ++ V+F                 AL L
Sbjct: 435 TVSD-ITVVDDYAHHPTEITALLKAARRRYPDSQLHVLFQPHLFSRTQFFAQEFADALSL 493

Query: 410 ADIAIVTDDNPRSED--------PEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459
           AD  IVT   P  E         P  I  +  HG   +  +   +   A +         
Sbjct: 494 ADDVIVTGIFPAREKQSDFPQVTPNTIV-DNAHGDGSYEIEAVDDMSLAAQMLAMRAQPG 552

Query: 460 DVLVVAGKGH 469
           DV+   G G 
Sbjct: 553 DVIFTVGAGD 562


>gi|170744732|ref|YP_001773387.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium sp. 4-46]
 gi|229620047|sp|B0UFC6|MURC_METS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168199006|gb|ACA20953.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium sp. 4-46]
          Length = 471

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 142/417 (34%), Gaps = 47/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +    +     + VV        L   +         +AV GT GK+
Sbjct: 67  AELVVVSTAIRRDNPELAMARERRLPVVRRAEMLAELMRFKSC-------VAVAGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLDAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D+  +  A  +A  R F + +P    A++ 
Sbjct: 168 ---------GTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDA-FRAFIDNIPFYGFAVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD------- 299
            D    ++++ R  +   R+++ G      + L  V     + +  + +  +        
Sbjct: 218 IDHPTVQDLVGRIEDR--RIITYGENPQADVRLIDVDLRGGQSRFRVMIRDRRPGFRLEM 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + P+PG+    NA  A  +   +G+    +   L     V  RF   G    G +I+
Sbjct: 276 EDLVLPMPGKHNALNATAALAVAHELGVAPEAIRRALAGFGGVKRRFTRTG-EWNGAQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +LK  R  T G ++ V                    + AD  IV    
Sbjct: 335 DDYGHHPVEIKAVLKAARASTEGNVVAVVQPHRYTRLASLFDDFCTCFNDADTVIVAPVY 394

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
              E P      + + A +            R E +   +  ++   D +V  G G+
Sbjct: 395 AAGEAPIEGFDRDTLVAGLKSRGHRNAVALERSEDLAGLVNGLVGPGDYVVCLGAGN 451


>gi|224531597|ref|ZP_03672229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511062|gb|EEF81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 463

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/452 (17%), Positives = 155/452 (34%), Gaps = 38/452 (8%)

Query: 27  ERKINEVSSDSRHIQAG----WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ ++  S DSR I+       ++ A  GNK DG  F+   I  G +  V S  +  +  
Sbjct: 25  EKIVSFYSLDSREIKNDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSRDHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  +     +A+TG++GK++    +  I  +  
Sbjct: 85  EYLNDNEELVFLLTSNVIKLLQTLASCLIERTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  Q     K ++    +      ++   + Y   + K+A 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQVIAFEKSKIIGRNIE---IFVLNEMNDYCVYLEKKAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V  V +  + +++K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IENPNVKIVYFDFENLNIKSFSFLEGKIFYDFIYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT-- 378
            + +G+    + E L +     GR E    N  G  I  D Y     S   +   I    
Sbjct: 307 ALFLGMGEKEIREGLIETAFQKGRAEIFTQN--GYLILNDSYNGNMGSFMALKDIILDLN 364

Query: 379 ITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIH 434
           I + + I++      G    +  + ++ +      D    + ++     D E +  + ++
Sbjct: 365 IQNKKFIILGSFKELGEFEYKTHKDLIQEAISMNFDKIFLIGEEFLAVRDSENLVEKCLY 424

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               F +       I   ++ L     +V+ G
Sbjct: 425 YFSEFDKF------IDFFLKSLEPSVFIVIKG 450


>gi|134302664|ref|YP_001122633.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166224691|sp|A4J011|MURC_FRATW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134050441|gb|ABO47512.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 451

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 129/362 (35%), Gaps = 32/362 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT GK++ +S +  +  +    S  I     +                +  A S +
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFI-----VGGV-------------VKYADSNI 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EA            +       TN+  DH+  +      +   +  F + 
Sbjct: 148 QVNGTDKLVIEADESDAS---FLFLSPQVVIITNIDLDHMATYNNS---YQTLLENFTDF 201

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + KES   IY   DD   ++++ + + +   V S G+     + +     I       I 
Sbjct: 202 VSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIR 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN 352
            +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      +
Sbjct: 262 YKGDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVIS 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                +  DY H    +   +  +R    + +II VF                 AL LAD
Sbjct: 322 GHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPKALSLAD 381

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+       E         +I+ G+ G++       AI    ++ N+  V+++ G G 
Sbjct: 382 QLILLPTYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILIQGAGD 441

Query: 470 ET 471
            T
Sbjct: 442 VT 443


>gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 813

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 143/389 (36%), Gaps = 30/389 (7%)

Query: 28  RKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
             I+ +  DSR I  +   +F A  G ++DGHL+I  A  +G    V+      +     
Sbjct: 23  VSIHYLLYDSRKIAHEKLGVFFAFTG-RQDGHLYIQDAYNKGVRNFVLEKDAEQE----V 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +  IL V N+   L   A     +    ++ +TG++GK+ V  ++ Q+         
Sbjct: 78  QMPDANILWVANSWTALQSLAKHNRSQFQGPVIGITGSNGKTIVKEWLFQLMS------- 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKL 204
                         +  +  S + +A +L  LS+Q    +     SH  +  RL+  IK 
Sbjct: 131 -------PEYKIYRSPKSYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKP 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  H     ++      K+RLF     K++  +IY   A   E ++  +   
Sbjct: 184 TYGVLTNIGIAHQQGFASKLEKTEEKLRLF-----KDAETLIY--PAKYLEAVQIPYKPR 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                     +            +  VT+   GK F    P      + NA+    + + 
Sbjct: 237 KLSWGEEEDNQLEVYSIRKPEDGETYVTLYYGGKTFGISVPFTDSAAMENAITCVAVMLR 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGR 383
            G D+AL+ E +  L  V  R E     +    I   Y++   SL++ L  + +      
Sbjct: 297 FGYDTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIALDFLNQQHQHTN 356

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            I++              + K+   +AD 
Sbjct: 357 SILILSDIPGVTLTDEKNLNKLKRLVADR 385


>gi|226311546|ref|YP_002771440.1| hypothetical protein BBR47_19590 [Brevibacillus brevis NBRC 100599]
 gi|226094494|dbj|BAH42936.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 388

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 123/375 (32%), Gaps = 32/375 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++AVTG++GK++    +  I      +   +   + + +     +             
Sbjct: 20  KPVIAVTGSAGKTTTKEMIYSILSLRMPTYKSMYNKNFLGNTRAHTKRIR---------- 69

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN-AKMRL 233
                     +       G  +     I+   G  TN+G  HI            AK  L
Sbjct: 70  ---DEHKAAVLEYGIYRSGHLRQHCKIIQPSMGVITNIGTAHIGNFGGDAKQLALAKTEL 126

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH--NAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ 290
              + P      +  D  YS+E +++ +  +   ++++ G  Q       +     N  +
Sbjct: 127 IRHMKPT-GTVFLNRDCPYSREFVQQPYLGSFTGKIVTFGKEQEADYKAGRTKIEGNGFR 185

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              S+ G+   F  P+PGE  +YNAL A  +   +GI    +   L +      R     
Sbjct: 186 FECSLRGEKESFFVPIPGEHNLYNALAAIAVAHTMGIPVDDIRRGLSQFRGQRKRLTSYR 245

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIA 406
             +    +   Y+   ++ +  +  +  +     I V       G    +G   +   ++
Sbjct: 246 LANNIQVLDDTYSSNPDAAKAAIDVLSQVGHTTKIAVLASMLEMGKYDVKGHEDVGIYLS 305

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVV 464
               D      ++ R       RA I  G P    +    +A   R   + L      +V
Sbjct: 306 QKNVDYLYTLGNSARYIA----RAAIRSGFPANRVRHCLSKAGLHRRLAKQLKPDTAFLV 361

Query: 465 AG----KGHETVHIV 475
            G    K  ETV  +
Sbjct: 362 KGSNRLKMGETVQFL 376


>gi|326315566|ref|YP_004233238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372402|gb|ADX44671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 503

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 142/406 (34%), Gaps = 33/406 (8%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +      +  +  V +D+R +QAG +FVA+ G + D + F+        +A    +A +L
Sbjct: 26  VGGPDALQLPLGRVHTDTRTLQAGDLFVALRGERFDANEFLA-------QARAGGAAAAL 78

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                   +  P + V +T   L   A+    +    ++ VTG++GK++V      + + 
Sbjct: 79  AHPGRLEAAGLPGIEVPDTLAALGALAAGWRARLDLPLIGVTGSNGKTTVTQMTAAVLRA 138

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
               +      +T  +F  D  +        A   + +   G+ H    A   G+ Q   
Sbjct: 139 WKGDAAF----ATQGNFNNDIGVPLMLLRLRAAHEAAVIELGMNHPGEIAVLAGIAQ--- 191

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                      N  R+H+++  T +A       +   L P    A+  ADDAY+      
Sbjct: 192 ----PTVALVNNAQREHLEFMHTVRAVAEENGSVISAL-PAGGVAVFPADDAYAPLWRGL 246

Query: 260 AHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           A    C  L+ G +      +   +         V I      FD    + G   V NAL
Sbjct: 247 AGARRC--LAFGMEPGSAAGVRCTRAHWEAGAWNVHIDTPLGGFDGTVRIAGRHNVANAL 304

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNS 368
            A    +A G     +   L     V GR            G + R   +   Y    +S
Sbjct: 305 AATACALAAGAPLDAIARGLAAFEPVKGRSRAFTAAVPQPGGGSRRITAVDDTYNANPDS 364

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +   +  +  +   R++V+   G   DQG +    +      D  I
Sbjct: 365 MHAAIDVLGELPGPRLLVMGDMGEVGDQGPQ-FHAEAGSHARDRGI 409


>gi|187932212|ref|YP_001892197.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229620042|sp|B2SE51|MURC_FRATM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187713121|gb|ACD31418.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 451

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 129/362 (35%), Gaps = 32/362 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT GK++ +S +  +  +    S  I     +                +  A S +
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFI-----VGGV-------------VKYADSNI 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EA            +       TN+  DH+  +      +   +  F + 
Sbjct: 148 QVNGTDKLVIEADESDAS---FLFLSPQVVIITNIDLDHMATYNNS---YQTLLENFTDF 201

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + KES   IY   DD   ++++ + + +   V S G+     + +     I       I 
Sbjct: 202 VSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSIDADVQIYDYHIIDEITHFKIR 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN 352
            +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      +
Sbjct: 262 YKGDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVIS 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                +  DY H    +   +  +R    + +II VF                 AL LAD
Sbjct: 322 GHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPKALSLAD 381

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+       E         +I+ G+ G++       AI    ++ N+  V+++ G G 
Sbjct: 382 QLILLPTYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILIQGAGD 441

Query: 470 ET 471
            T
Sbjct: 442 VT 443


>gi|4033456|sp|O51926|MURC_BUCAP RecName: Full=Putative UDP-N-acetylmuramate--L-alanine ligase;
           AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 139/413 (33%), Gaps = 44/413 (10%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR 139
            S+ I S+ P +     +    L  + +     +    +AV+GT GK+++ + +  I  +
Sbjct: 82  ISSAIPSDNPEIKAAKKKNIPILLRAEMLQIFMQFKFGIAVSGTHGKTTLLAMIFDILNQ 141

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           + L    I                      L K+++  +  G +   +  +         
Sbjct: 142 NKLDPTVIN-------------------GGLIKSINSHAKLGFSKYFIAEADESDGSFLC 182

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +       TN+  DHID +  +          F   +P    AI+  D+   K ++  
Sbjct: 183 --LNPTTAIITNIEPDHIDNYNGEFKLLKKTFLDFLNKIPSYGIAILCTDN---KAILNI 237

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNAL 316
                C+V++ G+ +     +            T+  + +  + + +  LPGE    NA 
Sbjct: 238 LPKIKCKVITYGFNKSAEFRITSYKQSDFISNFTLIRKKQLNNLEIILNLPGEHNALNAT 297

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSNS 368
            A        I    + + L+       RFE+VG          ++   +  DY H    
Sbjct: 298 AAIAFATYQKIPDEKIYQSLKNFKGTSRRFEYVGKLFIKKKSIQNKSVMLINDYGHHPTE 357

Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---- 423
           L   +K IR +     +I++F                  L   D  ++ +    +E    
Sbjct: 358 LSETIKTIRKSWPKKNLIMIFQPHRYTRTRNLYFDFIKILSQVDSLLILNVYSANESFIS 417

Query: 424 --DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
             D   + ++I       I   NR   +   +  LN  D++++ G G     I
Sbjct: 418 GADSFSLYSDIKKIKKNVILVTNRNLILNYLLPHLNGNDIILIQGAGDIDTII 470


>gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
 gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
          Length = 445

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 165/418 (39%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   L    S+      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 148 -PVLEAELQR-ESKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ +DD + + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +  ++ V   G  + Q   P+   +A
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQN--LLFVILGGMGKGQDFTPLRTALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|325518027|gb|EGC97835.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. TJI49]
          Length = 465

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 141/427 (33%), Gaps = 48/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA A+VVS+A    +          + +V      L+       G    
Sbjct: 56  GHD--AANIE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + V A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAENVDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            E +     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 RERRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGHYTLIDDYGHHPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSEDPEKI-------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D  ++T+     E            RA    G    +   +  E      ++    DV
Sbjct: 382 TVDALVLTEVYAAGEAAIATANGDALSRALRTAGKVDPVFVASVDEVPDALAKVAQNGDV 441

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 442 VITMGAG 448


>gi|293192329|ref|ZP_06609440.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
 gi|292820244|gb|EFF79238.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
          Length = 463

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 139/425 (32%), Gaps = 54/425 (12%)

Query: 67  GAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTR--------KFLSLFASRLYGKH 113
           G  A V   A  +   S       IR + P L + + R        + L+L AS +    
Sbjct: 52  GVRAFVGHEASHVDPSSVVVVSTAIREDNPELAIAHERGQRVIHRSQALALAASGM---- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSS--FQIGPTSTISSFAQDNRLTTPSPIYLA 171
               + V G  GK++ +  +       G        G    + + A              
Sbjct: 108 --RFVGVAGAHGKTTTSGMLAIGLSACGRDPSVAVGGVLPQLGTGAHLGG---------- 155

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                    G   V+    S G   +    I+      TN+  DH+D + +++  F    
Sbjct: 156 ---------GDVFVAEADESDGSFLNYTPAIE----IVTNVEPDHLDRYHSREE-FEGIF 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIH 286
             F   +      +  A+D  +  + + A   G RV++ G + +      + +  V    
Sbjct: 202 VEFARRMVPGGLLVTCAEDEGAVRLAQSARAEGLRVVTYGRRERSLCTPDVVIADVRVEA 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                +++           +PGE  V NA  A    I  G+    + + L +      RF
Sbjct: 262 QGAGASLTWGELSASLALSVPGEHNVLNAAAAWVAGIECGLSPQAIADGLGEFTGAARRF 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405
           E  G      R++ DYAH    +E  ++    +   G + VVF                 
Sbjct: 322 EARGQVG-SRRLFDDYAHHPTEVEAAIREAHVVAGEGDVTVVFQPHLYSRTRIFAERFAQ 380

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AL  AD  ++       EDPE       I   I G     +  EA R A  +  +  V +
Sbjct: 381 ALSGADHVVLAGIYGAREDPEPGVDSSLISSRIEGAFYVEDMHEAARLAASLTPEGGVCL 440

Query: 464 VAGKG 468
             G G
Sbjct: 441 TMGAG 445


>gi|77361418|ref|YP_340993.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876329|emb|CAI87551.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 453

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 151/450 (33%), Gaps = 56/450 (12%)

Query: 48  AIVGNKEDGHLFIPQA-----IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILV--- 94
           A  G +  G      A     I  GAE  +     +++D      S+ I    P ++   
Sbjct: 9   AFEGYRITGSDIAHSAMTDRLIKAGAEVFIGHHENNVKDANVVVVSSAIDETNPEIIAAK 68

Query: 95  ---VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
              V   R+   + A  +  +H    +A+ GT GK++  S +  I  ++GL    I    
Sbjct: 69  AARVPVVRRA-EMLAELMRFRHG---IAIAGTHGKTTTTSLIASIYAQAGLDPTFI-IGG 123

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            ++S   + ++           ++       + +                ++ +    TN
Sbjct: 124 LLNSAGSNAKVGKSD-----FLIAEADESDASFL---------------HLQPMVSVITN 163

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  DH++ +             F   LP    A++  D   + E++ R       V++ G
Sbjct: 164 IEEDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVASELIPRFGRP---VITYG 220

Query: 272 YQGK-FIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                   +       N  + T++  +G+       +PG+    NA  A  +     I +
Sbjct: 221 ESSDADYRMSDFSQSANTCKFTVTNKQGESLTATLNMPGKHNALNATAAIAVAKDQNIAN 280

Query: 330 ALVLEHLEKLHVVPGRFEFVG--TNSRG-GRIYVDYAHTSNSLEMILKNIRT-ITSGRII 385
             +LE L+K   +  RF+  G   N RG   +  DY H  + +   +   R      R++
Sbjct: 281 FAILEALQKFEGIGRRFQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREGWPDKRLV 340

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF 439
           +V+                  L   D  ++ D     E+P      + +   +       
Sbjct: 341 MVYQPHRFTRTRDLYEDFVKVLAEVDQLLLLDVYSAGEEPIVGADSKSLCRSLRQRGKEP 400

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               N  E      + L   D+++  G G+
Sbjct: 401 RHVANSAELASVLADCLQNNDLVLTQGAGN 430


>gi|126665245|ref|ZP_01736228.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
 gi|126630615|gb|EBA01230.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
          Length = 486

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 131/414 (31%), Gaps = 45/414 (10%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSV 129
               +   S+ + +N P +V   + +        + A  +  +H    +AV GT GK++ 
Sbjct: 77  EKADVVVVSSAVAANNPEVVAARSNRIPIVPRAEMLAEIMRYRHG---IAVAGTHGKTTT 133

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  +   +GL      PT  I                L  A +     G  ++  EA
Sbjct: 134 TSLIASVFAEAGLD-----PTFVIGGK-------------LNSAGTNAKLGGSRYLIAEA 175

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       +  +    TN+  DH+D +             F   LP    A++  D
Sbjct: 176 DESDAS---FLHLTPLISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCID 232

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLP 307
           D Y +E++ R          +         + + +   + +  +   G   D      +P
Sbjct: 233 DPYVREILPRISRTII-TYGIDNPEADYRAENIVSDGLRTRFLVKRPGPRADLQVELKMP 291

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAH 364
           G   V NAL    +    G+D A +   L     V  RF+  G          +  DY H
Sbjct: 292 GRHNVLNALAVIAVATDDGVDDASIGRGLAGFAGVGRRFQVYGDYPIAKGSITLVDDYGH 351

Query: 365 TSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +  +++  R    GR +V+                    L   D  ++ D     E
Sbjct: 352 HPTEVAAVIRAARDAWPGRRVVMLYQPHRFSRTRDLYEDFVKVLSTVDGLLLMDVYSAGE 411

Query: 424 ------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
                 D   +   +   G    +   +  + I T +   L   D+L+  G G 
Sbjct: 412 AAIPGCDGRALCRSLRQRGKVEPVFVEHNKD-IETLLASVLRDGDLLITQGAGD 464


>gi|154509041|ref|ZP_02044683.1| hypothetical protein ACTODO_01558 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798675|gb|EDN81095.1| hypothetical protein ACTODO_01558 [Actinomyces odontolyticus ATCC
           17982]
          Length = 463

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 141/425 (33%), Gaps = 54/425 (12%)

Query: 67  GAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTR--------KFLSLFASRLYGKH 113
           G  A V   A  +   S       IR + P L + + R        + L+L AS +    
Sbjct: 52  GVRAFVGHEASHVDPSSVVVVSTAIREDNPELAIAHERGQRVIHRSQALALAASGM---- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               + V G  GK++ +  +       G   S    G    + + A              
Sbjct: 108 --RFVGVAGAHGKTTTSGMLAIGLSACGLDPSVAVGGVLPQLGTGAHLGG---------- 155

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                    G   V+    S G   +    I+      TN+  DH+D + +++  F    
Sbjct: 156 ---------GDVFVAEADESDGSFLNYTPAIE----IVTNVEPDHLDRYHSREE-FEGIF 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIH 286
             F   +      +  A+D  +  + + A   G RV++ G + +      + +  V    
Sbjct: 202 VEFARRMVPGGLLVTCAEDEGAVRLAQSARAEGLRVVTYGRRERSLCTPDVVIADVRVEA 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +    +++           +PGE  V NA  A    I  G+    + + L +      RF
Sbjct: 262 HGAGASLTWGELSASLALSVPGEHNVLNAAAAWVAGIECGLSPQAIADGLGEFTGAARRF 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405
           E  G      R++ DYAH    +E  ++    +   G + VVF                 
Sbjct: 322 EARGQVG-SRRLFDDYAHHPTEVEAAIREAHVVAGEGDVTVVFQPHLYSRTRIFAERFAQ 380

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AL  AD  ++       EDPE       I   I G     +  EA R A  +  +  V +
Sbjct: 381 ALSGADHVVLAGIYGAREDPEPGVDSSLISSRIEGAFYVEDMHEAARLAASLTPEGGVCL 440

Query: 464 VAGKG 468
             G G
Sbjct: 441 TMGAG 445


>gi|77166311|ref|YP_344836.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani ATCC
           19707]
 gi|109892714|sp|Q3J790|MURC_NITOC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|76884625|gb|ABA59306.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosococcus oceani ATCC
           19707]
          Length = 476

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 155/429 (36%), Gaps = 50/429 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   PQ +  G + +VVSSA    +   +      I VV    + L+      YG    
Sbjct: 67  GHD--PQHVE-GCDVVVVSSAIDEDNTEVSAARGRLIPVVPRA-EMLAELMRFRYG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  I   +      + PT  I         +  +   L K   
Sbjct: 119 --IAVAGTHGKTTTTSLIAGILGEA-----NLDPTFVIGG----QVNSIGANSRLGKGEY 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++    +  S               ++ +    TN+  DH+D +        A    F 
Sbjct: 168 LVAEADESDASFL------------LLQPLLAVITNVDADHMDAYGGDFTALKAAFLEFL 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++      G  VL+ G  +    HL+++     + Q  ++
Sbjct: 216 HHLPFYGLAVVCLDDPVLRELL---PGIGRPVLTYGTCKEADYHLRELKQTQGQTQFQVA 272

Query: 295 VEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
             GKD     +  LPG     NAL A  +   +GI  + +   L+    +  RF+    +
Sbjct: 273 RPGKDNWLTVVLNLPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEI 332

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T +    +  DY H    L   L+ IR      R++V+F                  L 
Sbjct: 333 ATPAGKVLLVDDYGHHPRELAATLEAIRAGWPERRLVVIFQPHRYTRTRDLFEEFIRVLS 392

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAI-RTAIEMLNKQD 460
             D+ ++ +  P  E P        +   I  HG    I   +  E I     ++L + D
Sbjct: 393 QVDVLLLLEVYPAGEAPIGGADSRALWQAIQTHGQVSPILVED-KEIIGEMLFDLLQEGD 451

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 452 LLLTVGAGD 460


>gi|254435723|ref|ZP_05049230.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
 gi|207088834|gb|EDZ66106.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
          Length = 464

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 155/429 (36%), Gaps = 50/429 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   PQ +  G + +VVSSA    +   +      I VV    + L+      YG    
Sbjct: 55  GHD--PQHVE-GCDVVVVSSAIDEDNTEVSAARGRLIPVVPRA-EMLAELMRFRYG---- 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  I   +      + PT  I         +  +   L K   
Sbjct: 107 --IAVAGTHGKTTTTSLIAGILGEA-----NLDPTFVIGG----QVNSIGANSRLGKGEY 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++    +  S               ++ +    TN+  DH+D +        A    F 
Sbjct: 156 LVAEADESDASFL------------LLQPLLAVITNVDADHMDAYGGDFTALKAAFLEFL 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++      G  VL+ G  +    HL+++     + Q  ++
Sbjct: 204 HHLPFYGLAVVCLDDPVLRELL---PGIGRPVLTYGTCKEADYHLRELKQTQGQTQFQVA 260

Query: 295 VEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
             GKD     +  LPG     NAL A  +   +GI  + +   L+    +  RF+    +
Sbjct: 261 RPGKDNWLTVVLNLPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEI 320

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T +    +  DY H    L   L+ IR      R++V+F                  L 
Sbjct: 321 ATPAGKVLLVDDYGHHPRELAATLEAIRAGWPERRLVVIFQPHRYTRTRDLFEEFIRVLS 380

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAI-RTAIEMLNKQD 460
             D+ ++ +  P  E P        +   I  HG    I   +  E I     ++L + D
Sbjct: 381 QVDVLLLLEVYPAGEAPIGGADSRALWQAIQTHGQVSPILVED-KEIIGEMLFDLLQEGD 439

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 440 LLLTVGAGD 448


>gi|254469048|ref|ZP_05082454.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
 gi|207087858|gb|EDZ65141.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
          Length = 461

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 145/415 (34%), Gaps = 48/415 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A    +       N  I ++    + LS       G      +A+ GT GK+
Sbjct: 65  ADVVVTSTAIPKNNPEIVAAKNQNIPIIPRA-EMLSELMRFKEG------IAIAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S  S +  I   +GL      PT  I       R        L K+   +     +  S 
Sbjct: 118 STTSILATIMNDAGLD-----PTYVIGGRINSLRQ----SARLGKSKHMIVEADESDASF 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  DH++ +   +         F   +P  +   + 
Sbjct: 169 LH------------LNPSNVLVTNIDYDHMETYGHDEERLKQTFVDFIHQIPFYNEVFLC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV---EGKDFDFL 303
            DD   K + K        +++ G+  K   +  +V    NK    ++    + + F   
Sbjct: 217 IDDKNIKSIQKLIARP---IITYGFSKKADYYPDRVVIKKNKSSFRVNSISKKIRSFSVE 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF---EFVGTNSRGGRIYV 360
             +PG   + N L A  + +++ I   ++ + L+K   V  RF   E      +   +  
Sbjct: 274 IDMPGRHYILNTLGAIAIALSLNIKPQIISKALKKFKGVSRRFDLYEEFKLGEKNIHLID 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    ++ +L +I+    G+ I +VF                  L +AD   + +  
Sbjct: 334 DYGHHPTEIKAVLDSIKKGFPGKKINLVFQPHRYSRTKDLFEQFVQILAMADRLFLFEIY 393

Query: 420 PRSEDPEKIRA----EIIHGIPGFIEK-GNRIEAIRTAIEMLNKQD-VLVVAGKG 468
              E  + I+     E+I  I        +  +A R  IE   K D +L+V G G
Sbjct: 394 AAGE--QAIKGINSHELIKNIKKEKYILDDMAKA-RLLIEDKIKDDEILLVMGAG 445


>gi|157963621|ref|YP_001503655.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella pealeana ATCC
           700345]
 gi|189082500|sp|A8H983|MURC_SHEPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157848621|gb|ABV89120.1| UDP-N-acetylmuramate--alanine ligase [Shewanella pealeana ATCC
           700345]
          Length = 489

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 136/405 (33%), Gaps = 47/405 (11%)

Query: 83  SATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S  I ++ P LV     +        + A  +  +H    +AV GT GK++  S +  + 
Sbjct: 87  STAISADNPELVAAKELRIPVVRRAEMLAELMRYRHG---VAVAGTHGKTTTTSLIASVY 143

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++        PT  I                    ++       + +            
Sbjct: 144 GQAERD-----PTFVIGGLLNSAGTNARLGHSRY-LIAEADESDASFL------------ 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++ +    TN+  DH+D ++            F   LP    A++  DD   +E++
Sbjct: 186 ---HLQPMVSVVTNIEADHMDTYEGDLEKLKTTFVDFLHNLPFYGVAVVCIDDPIVRELI 242

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNA 315
            R      R+++ G+ +   +            + T+   G  D      LPGE  V N+
Sbjct: 243 PRIGR---RIVTYGFSEDADVRALDFKQTGYSCEFTVRRAGMDDLQLSVNLPGEHNVLNS 299

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMI 372
           L A  +     I+   ++  L     +  RF+ +G   T     ++  DY H  + +   
Sbjct: 300 LAAIAVATEDEIEDEAIITALADFQGIGRRFQQIGEFTTAKGEIKLVDDYGHHPSEVAAT 359

Query: 373 LKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------ 425
           +K  R      R+++++                  L   D  ++ D     E P      
Sbjct: 360 IKAARLGWPERRLVMIYQPHRYSRTRDLYEDFVEVLSQVDCLLMLDVYAAGEAPIPGADS 419

Query: 426 EKIRAEI-IHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
             +   I + G    +   +  E + T + E+L   D+L+  G G
Sbjct: 420 RALCRSIRVRGQVEPVFVAS-TEQLETVLPEILQDGDLLLTQGAG 463


>gi|331003528|ref|ZP_08327025.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330412369|gb|EGG91760.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 458

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 134/416 (32%), Gaps = 41/416 (9%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVAS 131
               L  ++A +  + P  +    +    +  + L G         +A++GT GK++  S
Sbjct: 68  DDIDLFVYTAAVHEDNPEFIKAKGKNIPIMTRAELLGYVMSKFKESIAISGTHGKTTTTS 127

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     I     +     +  + +                 VT      +S
Sbjct: 128 MLSYILLDSGQDP-TISVGGVLKKIKGNIHIGSGDVF-------------VTEACEYTNS 173

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +    G   N+  DH+D+ +      N+  + F      E   II     
Sbjct: 174 F-------LSLNPTIGVILNIEEDHLDFFKDIDEIRNS-FKKFVTNTSDEGCIIINDKIE 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF-DFLFPLPGE 309
            ++E+ +   N   +V+  G +     +  +           +  +G  + D    + G 
Sbjct: 226 NNEEITE---NFKGKVVRYGSENSDCFVNNIRYDELGYPTFDLIYKGSTYKDVKLCVGGN 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL +  +   +G+    +   L +      RFE  G       I  DYAH  + +
Sbjct: 283 HNIDNALASICVAFELGVGIEDIKNGLLEFSGADRRFEIKGKMGN-ITIVDDYAHHPSEI 341

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE--- 426
              L   +     R+++ F                  L   D  I+    P  E  +   
Sbjct: 342 AATLNIAKRYPHKRLVIAFQPHTFTRTKAFFEEFADVLKDVDNCIIAKIYPARETDDLGM 401

Query: 427 --KIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
             K+ +E I+ + G     +  + I    +E L   D+ +  G G     IV  GE
Sbjct: 402 SAKLLSERINSLGGNSRDFDTFDEIENYLLENLCDGDLFITMGAGD----IVRVGE 453


>gi|51598565|ref|YP_072753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
 gi|51573136|gb|AAU07161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
          Length = 463

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 140/400 (35%), Gaps = 31/400 (7%)

Query: 27  ERKINEVSSDSRHIQAG----WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           E+ ++  S DSR I+       ++ A  GNK DG  F+   I  G +  + +  +  +  
Sbjct: 25  EKVVSFYSLDSREIKDDNINVSLYFAYRGNKVDGFSFVKYLIDLGVKCFICAREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  +  K L   AS L  +     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSDVIKLLQTLASCLIERTNFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAGFEVGGSYIGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  Q+    K ++  + +      +    + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQSIAFEKSKIIGKNIE---IFVTNEMNDYCIYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + +++K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFESLNIKSFSFLEGKFSYDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L +     GR E +  N  G  I  D Y     S   +   I  + 
Sbjct: 307 ALFLGMREKEIREGLIETAFQKGRAEILTKN--GYLILNDSYNGNMGSFIALKNMILDLD 364

Query: 381 -SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
             G+  +V G     G    +  + ++ +      D   +
Sbjct: 365 IQGKKFMVLGSFKELGEFAYKTHKDLIKEAVSMNFDKIFL 404


>gi|194288896|ref|YP_002004803.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193222731|emb|CAQ68734.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 877

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 136/375 (36%), Gaps = 32/375 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTGT+GK+ VA  V ++ Q SG      G   +   F    ++ +           
Sbjct: 484 PVVGVTGTNGKTVVARLVARLLQLSGK---HTGLACSDGLFLDRRQVESGDRANWEAGHR 540

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI-DYHQTQQAYFNAKMRL 233
            L ++ V     E  S  +    L   +   G  TN    DH+ DY+   +      +R 
Sbjct: 541 ILMNRAVEAAVFENDSGSILSEGLAYDRCQVGVVTNFDQPDHLGDYYVEDEDRMYNVLRT 600

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN------ 287
             +++ ++  A++ A D     +++ A      V+  G   +   +    A         
Sbjct: 601 QVDVVLQDGAAVLNARDE---RLVEMAGLCDGDVIFFGLTPELPAIVSHRAAGKRAVYVR 657

Query: 288 --------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                       T  V+       +     FQ+ N L A     A+GI + L+   +   
Sbjct: 658 EGKIVLATGTSETALVDVAAVPLTYAGRVAFQIENVLAAVAAGWALGISNDLIRAGVVTF 717

Query: 340 H--VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V     F      G  + VD AH + +LE +   +    + R +VV+G G  R   
Sbjct: 718 DVGQVDVPGRFTLFERNGATVVVDDAHNAPALEALATALERFPAERRMVVYGAGVQRRDQ 777

Query: 398 KRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIEKGNRIEAI 449
                GK+     D   + +D       P +E    ++  +  G  +   I++G R  AI
Sbjct: 778 DLVRQGKVLGQHFDRVFLCEDRSVKRALPDAEARALLKQGLYEGRRVTKIIDEGTRASAI 837

Query: 450 RTAIEMLNKQDVLVV 464
             A+  L   D+LV+
Sbjct: 838 EAALSQLVPGDLLVL 852


>gi|89255606|ref|YP_512967.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|156501556|ref|YP_001427621.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010129|ref|ZP_02275060.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367001|ref|ZP_04983037.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|290953734|ref|ZP_06558355.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312920|ref|ZP_06803641.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|109892705|sp|Q2A5N4|MURC_FRATH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224689|sp|A7N9L2|MURC_FRATF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89143437|emb|CAJ78613.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|134252827|gb|EBA51921.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252159|gb|ABU60665.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 451

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 129/362 (35%), Gaps = 32/362 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT GK++ +S +  +  +    S  I     +                +  A S +
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFI-----VGGV-------------VKYADSNI 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EA            +       TN+  DH+  +      +   +  F + 
Sbjct: 148 QVNGTDKLVIEADESDAS---FLFLSPQVVIITNIDLDHMATYNNS---YQTLLENFTDF 201

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + KES   IY   DD   ++++ + + +   V S G+     + +     I       I 
Sbjct: 202 VSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIR 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN 352
            +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      +
Sbjct: 262 YKGDDLSFKLQLPGRYNVQNATACIITCLDLGFKYEDIRNALIKVTGVARRFDLYTKVIS 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                +  DY H    +   +  +R    + +II VF                 AL LAD
Sbjct: 322 GHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPKALSLAD 381

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+       E         +I+ G+ G++       AI    ++ N+  V+++ G G 
Sbjct: 382 QLILLPTYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILIQGAGD 441

Query: 470 ET 471
            T
Sbjct: 442 VT 443


>gi|302529277|ref|ZP_07281619.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302438172|gb|EFL09988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 481

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 88/412 (21%), Positives = 148/412 (35%), Gaps = 44/412 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V S+A    +          + V   +       A+ + G+     +AV GT GK
Sbjct: 80  GVDTVVYSTAVPRDNVEVRTAVKRGLRVAHRSTA----LAALMRGRFS---VAVAGTHGK 132

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S A+ +      +G+S            +    R+   S   L +  + +     +  S
Sbjct: 133 TSTAAMLVSALSGAGMSP----------DYVIGGRVGGRSGTGLGETSTIVVEADESDGS 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A             +      TN+  DH+D ++       A    F E        ++
Sbjct: 183 LVAY------------QPDVVVITNIDADHLDQYEDVDTLARAFAG-FAERAGTTGFVVM 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FL 303
             DD +S+ V +     G RV + G +G    L           V  +   +D D     
Sbjct: 230 PEDDPHSRWVTRYLRAKGIRVFTFG-EGSPADLSIRLESELPGSVRFTARFRDDDEAAVE 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG     NA  A    + +G   +  +  L +   V  RFE  G   RG R+Y DYA
Sbjct: 289 VPVPGSHMARNAGAALLTAVKLGASRSGAVLGLAQYPGVGRRFELKG-EPRGIRVYDDYA 347

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNP 420
               S+   L  +R     GR+I V          +       AL +AD  +V    D  
Sbjct: 348 CHHTSIRASLTALRRTAMGGRLIAVAEPCRQYRLAQFQAEIADALAVADRVVVLPVFDAD 407

Query: 421 RSED---PEKIRAEIIHGIPGFIEKGNRI-EAIRTAI-EMLNKQDVLVVAGK 467
           RS D   P +    +++ +PG  +   R  +A   A+ +     D++V  G 
Sbjct: 408 RSFDHCAPAEALTSLVN-LPGHDKYLARTPDAAARAVGQFARPGDLVVTLGA 458


>gi|146329426|ref|YP_001209869.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
 gi|189029172|sp|A5EY22|MURC_DICNV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146232896|gb|ABQ13874.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
          Length = 478

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/429 (20%), Positives = 142/429 (33%), Gaps = 50/429 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI  A      A+ +VVSSA +  +          I V+   +    L   R        
Sbjct: 67  FIGHAAENVEHADVVVVSSAIAENNVEVKQARALEIPVIRRAQMLAELMRFRFG------ 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S    +   +G   +F IG   T +                     
Sbjct: 121 -IAIAGTHGKTTTTSLTASLLSDAGLDPTFVIGGILTAAGSN------------------ 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +  G  H  V  S        L  ++ +    TN+  DH++ +        A    F 
Sbjct: 162 --ARLGEGHYLVAESDESDCSFWL--LQPMISIVTNIDADHLENYNGSYETLKAGFVRFL 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTIS 294
             LP    A++  DDA  + ++        R            +  +   +     V   
Sbjct: 218 HNLPFYGLAVLCIDDAGVRSILPEV-GRPVRTYGFSEDADVRAINVRQKGLAMHFDVIAH 276

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E + F     + G+  V NAL A  +   +GID   ++E L +   V  RF   G  + 
Sbjct: 277 DEDRCFSVTLNMAGKHNVLNALAAIIVGEELGIDRETIIEGLAQFKGVARRFTHHGRIAH 336

Query: 355 G---GRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLA 410
                 ++ DY H    ++ +L       +GR IV VF                  L + 
Sbjct: 337 DHGFADVFEDYGHHPREIKAVLDAAMEGFAGRRIVAVFQPHRFTRTRDLLDDFAEVLAVC 396

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLNKQD 460
           D  ++T+     E+P  I       +   I    R+E I  A           ++L   D
Sbjct: 397 DCLVLTEVYAAGEEP--IAGADARDLTRAIRAHGRVEPIFIADKEEIVPHLRHDILQDDD 454

Query: 461 VLVVAGKGH 469
           V++  G G 
Sbjct: 455 VVIFFGAGD 463


>gi|295111742|emb|CBL28492.1| UDP-N-acetylmuramate--alanine ligase [Synergistetes bacterium SGP1]
          Length = 497

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 152/431 (35%), Gaps = 48/431 (11%)

Query: 48  AIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
            + G+  D H   F PQ +       + SSA   +D      +    +      + LS  
Sbjct: 56  CLPGHSRD-HVDRFDPQLL-------IYSSAVD-EDCDELEAARARGVRTAGRGRALSWL 106

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
            +   G      + V GT GK++ +S +  +  R+GL+     PT  + +  +D      
Sbjct: 107 FNAASG------VGVAGTHGKTTTSSMLSLVLSRAGLA-----PTLYVGARMRDMGT--- 152

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                    + L  +G   ++    S G      +  +      TN+  DH+D+  + + 
Sbjct: 153 ---------NALLGEGRLFLAELDESDGS----FELFRPAVSIVTNVDWDHVDHFPSFED 199

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A  R F     + +P I+ A+D  ++ +++       R    G    +     V   
Sbjct: 200 VILAFAR-FASGRKEGAPLIVCAEDEGAQRMLEGLRGPLLR-YGWGRSWDWGAFDLVPRA 257

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                 ++  +GK        + GE  V NAL A      +G+        L+  H    
Sbjct: 258 TGGISCSVCRKGKVLGPLELSVSGEHNVLNALAALAAADVLGVPFEKAAATLKDFHGAAR 317

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG- 403
           R +  GT   G  +  DYAH    +   L  +R I   R I++        +    +   
Sbjct: 318 RLQTKGTLG-GVTVIDDYAHHPTEIAATLSALRGIYPNRRILLLYQPHRYTRTAALVEPL 376

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             AL  AD  ++       E P+++ AE     +           +  +A+R    +   
Sbjct: 377 TAALSGADEILLLPIYSAGEPPQQVSAEAIVERLRRAGKRIAFCRDEDDALRAVRALSQD 436

Query: 459 QDVLVVAGKGH 469
            D+L+  G G+
Sbjct: 437 GDLLLTMGAGN 447


>gi|260596516|ref|YP_003209087.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
 gi|260215693|emb|CBA28032.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
          Length = 488

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 151/451 (33%), Gaps = 68/451 (15%)

Query: 56  GHLFIPQAIAQ-----GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF---- 101
           G    P A+ Q     GA         ++ D S  + S     + P +V  +  +     
Sbjct: 48  GSDLAPNAVTQQLTALGATIYFNHRPENVLDASVVVVSSAISADNPEIVAAHEARIPVIR 107

Query: 102 -LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
              + A  +  +H    +AV GT GK++  + V  I   +GL    +      ++     
Sbjct: 108 RAEMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGTHAR 164

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-Y 219
              +         ++       + +                ++ +    TN+  DH+D Y
Sbjct: 165 LGNS------RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTY 203

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIH 278
           H   +         F   LP    A++  DD   +E++ R      ++ + G+ +   + 
Sbjct: 204 HGDFENLKQT-FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QITTYGFSEDADVR 259

Query: 279 LKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           ++       +   T+  + K +       PG     NA  A  +    GI+   +L  LE
Sbjct: 260 VENYRQTGAQGHFTLVRQDKPELRVTLNAPGRHNALNAAAAVSVATEEGIEDEAILRALE 319

Query: 338 KLHVVPGRFEFVG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                  RF+F+G       N + G   +  DY H    ++  ++  R       ++++F
Sbjct: 320 SFQGTGRRFDFLGEFPLANVNGKSGTAMLVDDYGHHPTEVDATVRAARAGWPEKNLVMIF 379

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPG 438
                             L   D+ ++ D  P  E P            IRA    G   
Sbjct: 380 QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPAGEAPIPGADSRSLCRTIRA---RGKVD 436

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I   +  +       +L+  D+++V G G+
Sbjct: 437 PILVSDPAQVAAMLAPVLSGNDLILVQGAGN 467


>gi|306784930|ref|ZP_07423252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
 gi|308330389|gb|EFP19240.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
          Length = 435

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 56  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 114

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 115 ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 161

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 162 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 220

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 221 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 280

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 281 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 340

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 341 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 397

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 398 RAELRPGDVVLV 409


>gi|215403547|ref|ZP_03415728.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis 02_1987]
 gi|289745432|ref|ZP_06504810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis 02_1987]
 gi|289685960|gb|EFD53448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis 02_1987]
          Length = 463

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 84  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 142

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 143 ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 189

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 190 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 248

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 249 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 308

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 309 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 368

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 369 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 425

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 426 RAELRPGDVVLV 437


>gi|167966741|ref|ZP_02549018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis H37Ra]
          Length = 445

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 66  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 124

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 125 ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 171

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 172 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 230

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 231 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 290

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 291 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 350

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 351 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 407

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 408 RAELRPGDVVLV 419


>gi|323497896|ref|ZP_08102905.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
 gi|323316941|gb|EGA69943.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
          Length = 486

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 144/429 (33%), Gaps = 52/429 (12%)

Query: 65  AQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKHP 114
            +GA   +  +  ++   S       I    P +V     +        + A  +  +H 
Sbjct: 65  QKGATVYIGHAEQNVAQASVVVVSTAINEENPEIVAARAARIPVVRRAEMLAELMRFRHG 124

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + V QI   +GL    +      S+       ++         +
Sbjct: 125 ---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RILI 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D +             F
Sbjct: 176 AEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFETLKQTFIDF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              LP    AI+  DD   +E++ +      +V++ G+ +   + +        + + T+
Sbjct: 221 LHNLPFYGQAIVCIDDPVVRELVPKISR---QVITYGFAEDADVRIDNYRQEGQQGKFTV 277

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             +GK D D    +PG     NA  A  +     I    +L  +        RF+ +G  
Sbjct: 278 IRQGKADLDITLNIPGRHNALNASAAIAVATEDDIADEAILNAMAGTQGTGRRFDHLGEF 337

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T +    +  DY H    +++ ++  R      R++++F                  L+
Sbjct: 338 DTGNGAVMLVDDYGHHPTEVDVTIQAARNGWEDKRLVMIFQPHRYSRTRDLYDDFANVLE 397

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEM-LNKQD 460
             D+ I+ D     E P        +   I   G    I   +  +A+   +   L   D
Sbjct: 398 QVDVLILLDVYSAGEKPIPGADGRALCRTIRGRGKLDPIFVPD-SQALPAVLANVLQDGD 456

Query: 461 VLVVAGKGH 469
           +++  G G 
Sbjct: 457 LVLTQGAGD 465


>gi|116670132|ref|YP_831065.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
 gi|189028971|sp|A0JV95|MURC_ARTS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116610241|gb|ABK02965.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
          Length = 467

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 93/417 (22%), Positives = 150/417 (35%), Gaps = 55/417 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AEA+V  SA    +          + V+  +    +  A        + ++ V GT GKS
Sbjct: 76  AEAVVAGSAIRADNPELQAARAAGLPVLHRSEALAAAMAG-------DRVVTVAGTHGKS 128

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S V  + Q +G   +F IG  + + S   +    T                 +    
Sbjct: 129 TTTSMVTVLLQGAGLDPTFAIG--ANVPSLGVNAASGTSD---------------IFVAE 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + S      +R           TN+  DH+DY+ T +A + +    F ELLP +   + 
Sbjct: 172 ADESDGSFLNYR-----PHIAVVTNVEPDHLDYYGTAEAVYES-FDSFTELLPADGVLVA 225

Query: 247 YADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            ADD  ++ + +R       RV++ G        +          V +S     F     
Sbjct: 226 CADDPGARALAERTRTRGNTRVVTYGTAED---AQLRLHDGGPGDVWVSTGAGRFALDLQ 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG     NA  A  + + +G+        L        RFEF G   RG R+Y DYAH 
Sbjct: 283 VPGRHNALNAAAAFAVALELGVAPDAASGALAHFSGASRRFEFKG-EGRGVRVYDDYAHH 341

Query: 366 SNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +   L   R++     + V+F         +       AL+ AD A+V D  P  ED
Sbjct: 342 PTEVRAALAAARSVAGDHKVHVLFQPHLFSRTREFAADFAEALNAADTALVLDIYPARED 401

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIE----------MLNKQDVLVVAGKGHET 471
           P       I G+   +  G+R+ A    +                D+++ AG G  T
Sbjct: 402 P-------IPGVSSKL-IGDRLSAGGRLVAAEDAVRAVVANAAAGDIVLTAGAGDVT 450


>gi|319786253|ref|YP_004145728.1| UDP-N-acetylmuramate/alanine ligase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464765|gb|ADV26497.1| UDP-N-acetylmuramate/alanine ligase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 479

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 144/421 (34%), Gaps = 47/421 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVSSA    +       +  I VV      L+       G      +AV GT GK
Sbjct: 74  GTDCVVVSSAIRDDNPELMEARSQRIPVVPRA-AMLAELMRFRRG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +    GL      PT  I                L  A +     G   + 
Sbjct: 127 TTTTSLTAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQWLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA        RL     +    TN+  DH++ +    A   +      + LP    A++
Sbjct: 169 AEADESDGSFLRL---NPLMAVITNIDADHLENYGGDFARLRSAFAELLQRLPFYGLAVL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
             DD    EV   A      V++ G  +   +  + +     + + T+ + EG       
Sbjct: 226 CIDDP---EVASLAAETPRHVMTYGTAENADVRAEDIVQEGPRMRFTLRLPEGASVPVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            LPG   V NAL AA +   +G+    +   LEK   +  RF  +G          R+  
Sbjct: 283 ALPGRHNVLNALAAAAVGWQLGVAPQAIAAALEKFAGIGRRFNDLGEVTTATGAKVRVVD 342

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    L  +    R      R++V F          +       L  AD  ++++  
Sbjct: 343 DYGHHPRELAAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSEADALVLSEVY 402

Query: 420 PRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHET 471
           P  E P          RA    G    +  G   E +R+ + ++L   D+L++ G G   
Sbjct: 403 PAGEAPIPGADSRALARAIRARGRSEPVVVGQVAE-LRSVLPDVLQDGDLLLMMGAGDIG 461

Query: 472 V 472
            
Sbjct: 462 Y 462


>gi|329905042|ref|ZP_08273977.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547778|gb|EGF32551.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 831

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 146/389 (37%), Gaps = 32/389 (8%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
              +F     G+ P  ++AVTGT+GK++    +  +  ++GL    +G T+T   + +  
Sbjct: 433 IAEMFKRGDDGRIP--VVAVTGTNGKTTTVRLIAHLMTQTGLR---VGMTNTDGVYIRGR 487

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID- 218
           R+ +        A + L    V     E +  G+ +  L   +      TN+G  DH+  
Sbjct: 488 RIDSGDCSGPRSARNVLLHPDVDAAVFETARGGVLREGLAFDRCQVAVVTNIGTGDHLGL 547

Query: 219 -YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM------------KRAHNAGC 265
            Y  T +     K R+  + +     A++ A D     +              R H    
Sbjct: 548 NYITTVEDLAVLK-RVIVQNVSDTGVAVLNATDPIVARMAGNCSGSVTFFGSDRRHPVMA 606

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G +  FI    + A   K +  I++   +          FQV N + +     A+
Sbjct: 607 THRAQGRRVVFIDDDMLVAAEGKTEYRIALS--EIPITRGGAIGFQVENVMASVAAGWAL 664

Query: 326 GIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +D  ++   L+            F   + RG  +  DY H  +++  +++ +  + + R
Sbjct: 665 DLDWDVMRSGLKSFANDSDNAPGRFNVFDYRGATLIADYGHNPDAILALVQAVECLPAKR 724

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGF--- 439
             VV    GDR         +I     D  ++  D   R     ++ A +  G+ G    
Sbjct: 725 RSVVISGAGDRRDEDIRQQTEILGAAFDDVLLYQDQCQRGRADGEVVALLRAGLAGASRT 784

Query: 440 -IEKGNRIE--AIRTAIEMLNKQDVLVVA 465
            +    R E  AI TA+E L+  D+ ++ 
Sbjct: 785 TVIDEIRGEFLAIDTALERLSPGDLCLIL 813


>gi|168334047|ref|ZP_02692266.1| UDP-N-acetylmuramate--L-alanine ligase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 438

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 134/418 (32%), Gaps = 50/418 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+++A +  +            +V    +FL    +    + P   + + GT GK++  
Sbjct: 51  VVITAAINENNEELKYAKELGKKIVTRA-EFLGDLMATY--EFP---ICIAGTHGKTTTT 104

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I   +  +     PT T+         +    I++     +L+     H S    
Sbjct: 105 SMLANILLHTNNN-----PTITVGGIVD----SIGGNIHIGDTKYFLTEACEYHNSFLDF 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +             + G   N+  DH+D+ +      ++    F  L+PK+   ++  + 
Sbjct: 156 N------------PMVGVILNIEEDHMDFFKDLDDIKHSFTE-FASLIPKQGL-LVIEET 201

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
           A       +   A      +     +         +      +  + +  F     L G 
Sbjct: 202 ALQNTPAIKNIAAPIETFGLSKTADWSAQNISFDANACPSFDVYYKNEFVFHIAIALAGT 261

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V N L A  +C  + I  A + + L        RFE  G       +  DYAH  + +
Sbjct: 262 HNVLNTLSAIAVCRFLDIPVAEISKDLIHFSGAKRRFEMRG-KIHDILLIDDYAHHPSEI 320

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
           +  L  +       + VVF                 AL      IVTD     E +P  I
Sbjct: 321 KATLNTVAKYPHKNLYVVFQPHTYSRTKTFLNGFVDALSTYGQIIVTDIYAARETNPGDI 380

Query: 429 RA-EIIH----------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            + +++            I  F E  +        +      D+++  G G+    I+
Sbjct: 381 HSRDLVKLLQNKGTNSIYIESFDEISD------YLLTTTEPGDIIMTMGAGNVN-QII 431


>gi|313813206|gb|EFS50920.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA1]
          Length = 471

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/426 (21%), Positives = 146/426 (34%), Gaps = 44/426 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P  +A GA  +VVSSA         IR + P LV             R++ +   
Sbjct: 66  GHD--PSHLA-GARTVVVSSA---------IRPDNPELVEA------HRLGLRIWHRSAA 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
               + G  G          I    G ++      + +     D      SP+      S
Sbjct: 108 LAALMLGRGGV--------SIAGTHGKTTTTGMVATMLDCAGADPSYVIGSPLAATGMSS 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +L       V  + S     Q+    +       TN+  DH+D   T QAYF+  + +  
Sbjct: 160 HLGGGEAFVVEADESDGSFLQYPSQIV-----VVTNVEADHLDNWGTPQAYFDGFVSMAT 214

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              P+    +  ADD  + E+  R  +    RV++ G  +   + L  +         T+
Sbjct: 215 R--PEVRYVVTNADDPGAAELACRLESTDTVRVVTYGESEQAEVRLVDLDLNGTTASATL 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       +PG + + NA  A  +   +GI    +L  +        RF+ VG  +
Sbjct: 273 VHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGISHQDLLTGIASFTGTLRRFQLVGRVA 332

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
               ++ DYAH    L   L   R +    GR+I  F                 AL LAD
Sbjct: 333 D-VSVFDDYAHHPTELRATLGAARRVVTGQGRVIACFQPHLFSRTRDFAGEFGSALTLAD 391

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             IV+D  P  EDP      E +   +I          ++ +      E +   D++   
Sbjct: 392 RVIVSDIYPAREDPIPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLVTTL 451

Query: 466 GKGHET 471
           G G  T
Sbjct: 452 GAGDVT 457


>gi|34763166|ref|ZP_00144133.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887164|gb|EAA24268.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 468

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 142/418 (33%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + ++ S+A    +   +   N  I       K   L A  L     E  +A+ GT G
Sbjct: 67  KGVDYVIASTAIKETNPELSYAKNNGI----TLLKRGELLAKLLNR---ETGIAIAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    E +   +  AI
Sbjct: 172 FM---------------NPKYAVITNIDADHLDVHGNLDNI---KKSFIEFISHTQKEAI 213

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    KE + R          S+  +   I  K +     K    + +  +   +F 
Sbjct: 214 ICMDCENLKEAITRLPKGKSVITYSIKDENASIFAKNIRITDRKTIFELYINKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L +  G+    + E L K      R++ +         G  ++
Sbjct: 274 LNIPGEHNIQNSLPVIYLALKFGVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I + R++ +F               K A    D  I
Sbjct: 334 KVRIIDDYAHHPTEIKATLKAIKSIDTSRLVAIFQPHRYSRVHFLLDEFKDAFKDVDKVI 393

Query: 415 VTDDNPRSEDPE-KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I +EI+  H     IE  N  + ++  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEILKEHINHNNIEVMNEWKDVKRYVSRVKKDSTYIFMGAGD 451


>gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
 gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
          Length = 447

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/361 (21%), Positives = 138/361 (38%), Gaps = 40/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL    P+N +A+TGT+GK++  + ++ I + +G      G   T           
Sbjct: 99  ELAYRL--SQPQNYIAITGTNGKTTTVTLIRDILKNAGRQVCLAGNVGT----------- 145

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             S + L + L + S   V    +E S+  L    +D       +  NL  DH+DY  + 
Sbjct: 146 PLSELVLNEDLLHKSDYDV---VLEMSNFQLLD--IDAFHPRVATIINLTPDHLDYMASL 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y+ +K R++          +   DD   KE +++      +++S   + +   + K  
Sbjct: 201 EEYYTSKTRIYMNQ-DHNDIYLQNKDDVVLKEYLQKYP-PQAKIVSFSLEQEADCMIKND 258

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           AI+ + Q  I+++         + G   + N ++A   CI  GID   + + L     V 
Sbjct: 259 AIYYQGQHIINLDD------IKIVGRHNIQNMMIAICACIHSGIDVQSIHDTLAAFTGVE 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EFV    +G + Y D   T+         I  + S    V+   GG         M 
Sbjct: 313 HRIEFV-REYQGVKYYNDSKATNT-----DAAIIALKSFEKPVILLMGGHEKGLDLREMA 366

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                ++ +          E  E+   ++    P         +AI  A E+    DV++
Sbjct: 367 NYQKQISHLICF------GEAGERFAKDMK--CPNTDIVKYMKDAIIKAKELAKSGDVVL 418

Query: 464 V 464
           +
Sbjct: 419 L 419


>gi|294815699|ref|ZP_06774342.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328298|gb|EFG09941.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 529

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 145/432 (33%), Gaps = 44/432 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A  +VVSSA    +      +   + VV  +   L+   + L
Sbjct: 113 GATVHIGH--AAGHLADDASCVVVSSAIRADNPELVRAAELSVPVVHRS-DALASLMTGL 169

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   +AV GT GK++  S +       G   S+ IG        A           
Sbjct: 170 ------RAIAVAGTHGKTTTTSMLAVALGALGLDPSYAIG-----GDLAGPGSNAHHGDG 218

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +  A +  S +                              N+  DH   + +    + 
Sbjct: 219 DIFVAEADESDRSFQKY-----------------APEVAIVLNVELDHHANYASMDEIYE 261

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVGY-QGKFIHLKKVCAIH 286
           +   +F   +      +I AD   + E+  R       R+++ G  +G  + +++V    
Sbjct: 262 S-FEIFAGRIVPGGTLVIAADQPGAVELTSRLRERTELRIVTYGESEGADVRVQRVTPNG 320

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +V + ++G+   F   +PG    +NA+ A     A+GI    +   L     V  R 
Sbjct: 321 LTSEVAVVLDGRPLTFTVSVPGRHYAHNAVAALAAGAALGIPVDELATALGAYTGVGRRL 380

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
           +  G    G ++   YAH    +   L+ +R   +  R++VVF         +       
Sbjct: 381 QLKGEAG-GVQVIDSYAHHPTEMTADLEAMRAAAADSRLLVVFQPHLFSRTQELGTEMGQ 439

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           AL LAD ++V D  P  EDP      E I                  E   T   M    
Sbjct: 440 ALALADASLVLDIYPAREDPVPGVTSELIITAARAAGADVTPAHAMREVPETVAGMAKPG 499

Query: 460 DVLVVAGKGHET 471
           D+++  G G  T
Sbjct: 500 DLVLTMGAGDVT 511


>gi|239814065|ref|YP_002942975.1| cyanophycin synthetase [Variovorax paradoxus S110]
 gi|239800642|gb|ACS17709.1| cyanophycin synthetase [Variovorax paradoxus S110]
          Length = 855

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 142/389 (36%), Gaps = 38/389 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LFA    G+ P  ++AVTGT+GK++ A  +  +   SGL +   G T+T   +    +  
Sbjct: 460 LFAHGDDGRIP--VVAVTGTNGKTTTARLINHLLASSGLRT---GMTNTDGVYVDGRQTD 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           +        A + L    V     E +  G+ +  L   +      TN+G  DH+   Y 
Sbjct: 515 SGDCSGPKSARNVLMHPDVDAAVFEVARGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYI 574

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GK 275
            T +     K  +   + P +  A++ A D     V   A      V+            
Sbjct: 575 TTVEDLAVLKRVIVRNVAP-DGYAVLNAADVN---VAAMAAGCPGHVIFFTADRQHPVMA 630

Query: 276 FIHLKKVCAIHNKQQVTISVEG--------KDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
               +    ++  Q   ++ EG        +D          FQV N + A     A+G+
Sbjct: 631 THRAQGKRTVYVDQDTLVAAEGSWRERIALRDVPITRGGTIGFQVDNVMAAVAAAWAVGL 690

Query: 328 DSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           D   +   L         VPGRF     + RG  +  DY H ++++  ++  + T+ + +
Sbjct: 691 DWDTIRSGLASFLNDAAGVPGRFN--VMDYRGATVIADYGHNTDAMRALVSAVDTMPANK 748

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFI-- 440
             VV    GDR          I     D  I+  D   R     ++ A +  G+ G    
Sbjct: 749 RSVVISGAGDRRDSDIRDQTAILGQAFDDVILYQDAAQRGRADGEVMALLRQGLQGAART 808

Query: 441 ----EKGNRIEAIRTAIEMLNKQDVLVVA 465
               E      AI TA+  L   D+ ++ 
Sbjct: 809 RYIDEIRGEFVAIDTALARLQPGDLSLIL 837


>gi|218708487|ref|YP_002416108.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus LGP32]
 gi|254766031|sp|B7VJ04|MURC_VIBSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218321506|emb|CAV17458.1| UDP-N-acetylmuramate-alanine ligase [Vibrio splendidus LGP32]
          Length = 486

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 152/432 (35%), Gaps = 56/432 (12%)

Query: 64  IAQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDN------TRKFLSLFASRLYGK 112
           +++GA   V   A      S+   S  I    P ++          R+   + A  +  +
Sbjct: 64  VSKGATVYVGHQASNVADASVVVVSTAINEENPEIIAAREARTPIVRRA-EMLAELMRFR 122

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    +AV GT GK++  + V QI   +GL    +      S+       ++        
Sbjct: 123 HG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RI 173

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++       + +                ++ +    TN+  DH+D +            
Sbjct: 174 LIAEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFETLKQTFI 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
            F   LP    A++  DD   +E++ +      +V++ G+ +   I ++       + + 
Sbjct: 219 DFLHNLPFYGQAVMCVDDPVVRELIPQVSR---QVITYGFSEDADIRIENYVQEGQQGKF 275

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  EGK + D    +PG     NA  A  +     I    +L+ +        RF+ +G
Sbjct: 276 TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDHLG 335

Query: 351 TNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
               G     +  DY H    +++ ++  R+  T  R++++F                  
Sbjct: 336 EYETGKGVAMLVDDYGHHPTEVDVTIQAARSGWTDKRLVMIFQPHRYSRTRDLYDDFANV 395

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------AIRTAIEML-N 457
           L+  D+ I+ D     E P  I       +   I    +I+        A+ +A+  +  
Sbjct: 396 LEQVDVLILLDVYSAGEKP--IAGADGRSLSRTIRGRGKIDPIFVADINALPSALANVIQ 453

Query: 458 KQDVLVVAGKGH 469
             D+++  G G 
Sbjct: 454 GGDLVLTQGAGD 465


>gi|320334251|ref|YP_004170962.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus maricopensis
           DSM 21211]
 gi|319755540|gb|ADV67297.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus maricopensis
           DSM 21211]
          Length = 462

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/429 (20%), Positives = 134/429 (31%), Gaps = 50/429 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +G + +V S A        T      + V    R    L A         
Sbjct: 54  GHD---AAHVRGVDVLVASEAVPKDHPELTAAHAQGVEVQPRMRLLGELLAGG------- 103

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + V GT GK++  S +      +GL          +  F  + R              
Sbjct: 104 PSVGVIGTHGKTTTTSMIAVTLAGAGLDPAAF-VGGIVPEFGSNAR-------------- 148

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF----NAKM 231
                G     V+ S       +   +      FTN   DHI    T QA +     A+ 
Sbjct: 149 --VGAGPFVAEVDESD-----PKFQELACGTAVFTNAEDDHIGGAGTAQATYWESVEAQH 201

Query: 232 RLFEELLPKESPAIIYAD--DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNK 288
             F   + +    +  AD  DA  + +      A   VL+ G           V    N 
Sbjct: 202 AAFARFVRQAERVLACADWVDAEGRSLDALLVGAR-EVLTYGTGADCTYRAVDVRPDANG 260

Query: 289 QQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              T+   G+        LPG   V N L A  +    G D       L        R++
Sbjct: 261 TSFTVERRGEVLGSARVRLPGTHNVLNGLAALAVADLHGADFPAAAAALAAFTGPGRRWQ 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +G    G  +  DYAH +  +   ++     T  R+ VVF         +       +L
Sbjct: 321 HIG-ELNGALVIDDYAHNATKVAAAIEAAHQ-TGRRVRVVFQPHRYLRTQQSWPRLAQSL 378

Query: 408 DLADIAIVTDDNPRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             AD  ++ D    SE P E I A +I       G  G     +R + ++   E     D
Sbjct: 379 MGADEVLLLDIAAASEPPIEGIHATLISDRMREEGHAGVRYSPDRAQVVQYLRETAAPGD 438

Query: 461 VLVVAGKGH 469
           V+V  G G 
Sbjct: 439 VIVTMGAGD 447


>gi|306968291|ref|ZP_07480952.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
 gi|308354132|gb|EFP42983.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
          Length = 432

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 53  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 111

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 112 ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 158

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 159 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 217

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 218 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 277

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 278 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 337

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 338 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 394

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 395 RAELRPGDVVLV 406


>gi|215411876|ref|ZP_03420658.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298525651|ref|ZP_07013060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308376925|ref|ZP_07668381.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
 gi|298495445|gb|EFI30739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308349502|gb|EFP38353.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
          Length = 439

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 60  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 118

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 119 ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 165

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 166 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 224

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 225 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 284

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 285 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 344

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 345 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 401

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 402 RAELRPGDVVLV 413


>gi|306793625|ref|ZP_07431927.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308372153|ref|ZP_07427619.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308334223|gb|EFP23074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308338019|gb|EFP26870.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|323719312|gb|EGB28454.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis CDC1551A]
          Length = 431

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 52  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 110

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 111 ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 157

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 158 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 216

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 217 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 276

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 277 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 336

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 337 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 393

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 394 RAELRPGDVVLV 405


>gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 445

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 162/420 (38%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADVVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   + L  +G       +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 148 ----PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F          ++ ADDA+ + + +       +  S+ ++  F   ++   
Sbjct: 202 DYAHTKDKIFRG----GGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGR 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +  IS +        PL G     N + A  LC A G+    +LEH++    +P 
Sbjct: 256 LKQGNEDLISTQD------IPLQGLHNAANVMAAVALCEAAGLPREALLEHIKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   
Sbjct: 310 RVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A     + ++  D P      +IR ++        +     EA++ A       D++++
Sbjct: 365 LAGKAKGVFLIGVDAP------QIRRDLDGCDLNMTDCATLEEAVQKAYTQAEAGDIVLL 418


>gi|229825978|ref|ZP_04452047.1| hypothetical protein GCWU000182_01342 [Abiotrophia defectiva ATCC
           49176]
 gi|229789720|gb|EEP25834.1| hypothetical protein GCWU000182_01342 [Abiotrophia defectiva ATCC
           49176]
          Length = 469

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 147/435 (33%), Gaps = 64/435 (14%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSV 129
           +++   L  ++A I ++ P  +         L  +   G+   H +N +AV+GT GK++ 
Sbjct: 67  ITTDIGLVVYTAAIHADNPEFMEAKKLGIPMLERAECLGQIMSHYKNAVAVSGTHGKTTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  +   + L          I S    N     S  ++ +A  Y  S          
Sbjct: 127 TSMLSYVYLEAELDPTI--SVGGILSGIHGNMRLGKSENFIMEACEYADSF--------- 175

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  +H+D+  T +    +  + F  LLP+    ++  +
Sbjct: 176 ----------LHFTPTTAIVLNVEAEHLDFFGTLENERLSFTK-FINLLPENGLLVVNNE 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQV---TISVEGKD-FDF 302
               + ++    N   R++  G     G+          +N        + V+G++    
Sbjct: 225 IEGLENLI---QNKNIRIIYYGLRPVNGREPDYTAKNITYNDFGFPSYELIVKGENKGLV 281

Query: 303 LFPLPGEFQVYNALVAAGLCIA------IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              + GE  V+N+L      +        GI    + + ++K      RF++ G    G 
Sbjct: 282 ELSVTGEHNVFNSLAVIAAALEPSSIYPKGIALEKIKQGIKKYTGTDRRFQYKG-ERDGY 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I  DYAH    +   L+  + +   R+IV F                  L +ADI +  
Sbjct: 341 TIVDDYAHHPTEIRATLEAAKRVKHNRLIVAFQPHLYSRTKTFLHEFATVLSMADIVVFA 400

Query: 417 DDN-PRSEDPEKIRAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    R E+   I ++ I  I             F E  N        I      D+L+ 
Sbjct: 401 EIYAAREENHHDISSDNIREIMSENGHEAYFFKTFEEVEN------FLIHTCKPGDLLIT 454

Query: 465 AGKGHETVHIVTNGE 479
            G G     IV  GE
Sbjct: 455 MGAGD----IVKVGE 465


>gi|152980553|ref|YP_001354707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Janthinobacterium sp. Marseille]
 gi|151280630|gb|ABR89040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 101/465 (21%), Positives = 174/465 (37%), Gaps = 68/465 (14%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-H 113
           DG  F+  A++ G    ++ +    +   A      P+        F    A+    K +
Sbjct: 66  DGVDFV--AVSPG----LMPARELAEIIPAAAEKEIPVW--GEIELFAQALAALKEDKGY 117

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++A+TGT+GK++V S V  +CQR+GL+    G                 SP  L K 
Sbjct: 118 APKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI---------------SPAALDKL 162

Query: 174 LSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              L+  Q      +E SS  L  H    ++    +  NL +DH+D+H    AY + K R
Sbjct: 163 HQVLTDDQLPQVWVLELSSFQL--HTTYSLQADVATVLNLTQDHLDWHGDMAAYADDKAR 220

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-V 291
           +F       +  ++  DDA    ++ +  +   +V++ G               N  + +
Sbjct: 221 IF----GSNTIRVLNRDDA----LVMQMSSPLSKVITFGADEAEQADCFGLVDENGMRWL 272

Query: 292 TISVEGKDFDFL---------------------FPLPGEFQVYNALVAAGLCIAIGIDSA 330
           +++VE ++                           + G+    NAL A  LC AIG+  A
Sbjct: 273 SVAVEEEEPQKKRRKKDNVELAVSTNKLMPVDALKIRGQHNAINALSALALCRAIGLPFA 332

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN---SLEMILKNIRTITSGRIIVV 387
            +L  L   H  P R E V T   GG  Y D +  +N   ++  +     +       +V
Sbjct: 333 QLLHGLRDYHGEPHRVEHVMT--IGGVDYYDDSKGTNVGATVAALNGLGASQDGASNHLV 390

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              GGD        +       A   I+       +D + IRA +       I      E
Sbjct: 391 LIAGGDGKGQDFSPLADPVAKYARAVILI-----GKDADNIRAALQATGVDMINCTTLEE 445

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           A + A E+    D ++++     ++ +  N   +  V  D +REI
Sbjct: 446 ATQKAAELAQSGDAVLLS-PACASLDMFKNYAHRAQVFVDEVREI 489


>gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 194

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 27/219 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +       QW + ++  V+ DSR+++AG +FV + G + DGH 
Sbjct: 1   MKMS------LAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA+A +       +D         P LVVD+  + L         K    ++
Sbjct: 54  YVAKAFENGAKATLW-----AKDHPYDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    V  I         Q+    T ++F  +  +           L+  +
Sbjct: 109 AVTGSNGKTTTKDMVASILAT------QMNVIKTYANFNNEIGVP-------VTLLNMEA 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +     V +     G                T +G  HI
Sbjct: 156 NTEAVVVEMGMDRFGQLDLLSRLTTPDIAVVTMIGEAHI 194


>gi|119484349|ref|ZP_01618966.1| cyanophycin synthetase [Lyngbya sp. PCC 8106]
 gi|119457823|gb|EAW38946.1| cyanophycin synthetase [Lyngbya sp. PCC 8106]
          Length = 868

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 129/359 (35%), Gaps = 34/359 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I ++   +   IG T+T  ++  D  L +        A   L+   V    +E + 
Sbjct: 505 LIAHIFKQ---TKQVIGYTTTDGTYIGDFLLESGDNTGRQSAQLILNDPTVEVAVLETAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   +   G   N+  DH  ++   T +     K  +  E    +  A++ AD
Sbjct: 562 GGILRSGLGFNRCDVGVVLNVAADHLGLEDINTLEDMAQVKT-VVAEATDDKGYAVLNAD 620

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKD------ 299
           D    ++ K          S+        + +    + AI++   +T    G+D      
Sbjct: 621 DPLVADMAKWVKGKVAY-FSINPHNPIVQEHLRKGGIAAIYDGDFLTF-CNGQDTLQVEQ 678

Query: 300 ---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTN 352
                        F + N L A+      G+    +   L          PGR   +   
Sbjct: 679 MVNVPSTLRGLVSFMIANVLAASLAAYVQGVSIENISTGLRTFQASLEHTPGRMNLIELG 738

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + +DYAH     + I + +   + G  I V G  GDR       +G+++  + D 
Sbjct: 739 K--FHVLIDYAHNPAGYKAIGEFVCQWSEGERIGVIGGPGDRRDQDLKELGRLSTQMFDW 796

Query: 413 AIV-----TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+     T D PR E    IR  I    P   + E  +  EAI++A+   ++  ++V+
Sbjct: 797 VIIKEDDNTRDRPRGEAASLIREGICQEKPQFNYQEIWDETEAIQSALASASEGSLVVI 855


>gi|88856513|ref|ZP_01131170.1| UDP-N-acetylmuramate-alanine ligase [marine actinobacterium
           PHSC20C1]
 gi|88814167|gb|EAR24032.1| UDP-N-acetylmuramate-alanine ligase [marine actinobacterium
           PHSC20C1]
          Length = 482

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 140/427 (32%), Gaps = 45/427 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   G+ A +V +     D    + +    + V +  + L+            
Sbjct: 65  GHD----AAHLGSAAALVYTGALWPDNPEYLAAVERGIPVLHRSQALAWLVG------DT 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AV G  GK++    +    +  G S   +                      + + L 
Sbjct: 115 RLVAVAGAHGKTTSTGMIITGLRELGASPSFVN-------------------GGVIQGLG 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S  G   + V  +        L          TN+  DH+D++ +  A+ +A +    
Sbjct: 156 TSSGSGTDDLFVVEADESDGSFLLYSTA--IALITNVDADHLDHYGSHDAFDDAFVEFAS 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ +DD  +  V +R +     +++ G                    ++ V
Sbjct: 214 R---ASDAVVVSSDDPGAIRVTQRLN--HANIVTFGEAEDATVRLHSVTSEGPVAFSVVV 268

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G++      +PG     NA  A  +   +G D    ++ +        RFE       G
Sbjct: 269 DGREERVQLSVPGHHNAVNATGAIAVLTGLGHDLGAAIDAVSTFAGTQRRFELHAV-VDG 327

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA 413
             +Y DYAH    +E  L   R++   G++I V       R +       ++   LAD  
Sbjct: 328 VSVYDDYAHHPTEVEAALSGARSVVGAGKLIAVHQPHLYSRTRDMATEFAEVYERLADHT 387

Query: 414 IVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           IV D     EDP      ++ +             +  +A     E+  + D+++    G
Sbjct: 388 IVLDVFGAREDPIPGVTGELVSSQFADPTRVDFVPDWQQAANRVAELAGEGDIVMTLSCG 447

Query: 469 HETVHIV 475
                I+
Sbjct: 448 D-VYRII 453


>gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 817

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 145/405 (35%), Gaps = 44/405 (10%)

Query: 24  QWRERKI--NEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           Q  +  I  + +S DSR +Q     +F A+VG   D H++I   I++G +  VV+     
Sbjct: 20  QGIDENIYYDTISIDSRSLQNNENTLFFALVGPNNDAHIYIGDLISKGVKNFVVT----- 74

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                 +      L+V NT   L +FA          I+ +TG++GK+ V  ++  +   
Sbjct: 75  -YIPKRLTGKANFLIVKNTLVALQIFARYYRNLFHFPIIGITGSNGKTIVKEWLNFLLS- 132

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                    P   I    +        P+ +  A++   + G+    +  S+    ++  
Sbjct: 133 ---------PDYNIIRSPKSYNSQVGVPLSVI-AINENHNLGIFEAGI--STKDEMENLQ 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKE 255
             I+   G  TN+G  H +           K++LF  +    L K      + +      
Sbjct: 181 KIIQPTIGILTNIGTAHDEGFADISEKIKEKLKLFTAVEVLILNKNKTIETFIN------ 234

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                        S   Q   +  +K     +   + I+ +GK F    P   E  + N+
Sbjct: 235 -----KEINTFTWSTNDQSADVFFQKKTLNDHAL-LNITNQGKYFKIKIPFIDEASLENS 288

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM---I 372
           +    + + +  D   +   + +L  V  R +     +    I   Y+    SL++    
Sbjct: 289 MHCILVMLYLKYDLDTIKHRISQLFPVEMRLKVKNGINNCTLIDDSYSSDFQSLKIALDF 348

Query: 373 LKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           L+N +      +I+  ++  G + +     +   I  +  +  I 
Sbjct: 349 LENQKQHLKKTLILSDIYQSGLENEDLYVRVSQLIISNKINRVIC 393


>gi|119505119|ref|ZP_01627195.1| UDP-N-acetylmuramate-alanine ligase [marine gamma proteobacterium
           HTCC2080]
 gi|119459101|gb|EAW40200.1| UDP-N-acetylmuramate-alanine ligase [marine gamma proteobacterium
           HTCC2080]
          Length = 478

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 135/428 (31%), Gaps = 49/428 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            I  A     GA+ +V SSA               I VV    + L+       G     
Sbjct: 65  HIGHAAQNIVGADVLVTSSAIPSNTPELIAARQARIPVVPRA-EMLAELMRYRQG----- 118

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  +   +G       PT  I     +                 
Sbjct: 119 -IAVAGTHGKTTTTSLLASVFGEAGED-----PTFVIGGLLNNAGSNAR----------- 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFE 235
               G   +     S     H L     +    TN+  DH+D++      Y  A    F 
Sbjct: 162 -LGAGQYLIVEADESDASFLHLL----PMVSVVTNVEADHMDHYAGDIGNYEQA-FLDFL 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTIS 294
             LP    AI+  DD   + ++ +      RV++ G        +  V     + +  ++
Sbjct: 216 HNLPFYGLAILCLDDPGVQRLLPQITR---RVVTYGRDSEADYCVSSVAVSGLQTRFLLN 272

Query: 295 VEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-T 351
                        +PGE    NA  AA +   +G+    +   L +   V  RF  +G  
Sbjct: 273 RPRGRSSLSINLNMPGEHNALNAAAAAAVATELGLADDAIENGLSQFSGVGRRFSPLGEV 332

Query: 352 NSRGGRI--YVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALD 408
             RGG +    DY H  + +   L   R    G+ IV VF                  L 
Sbjct: 333 AWRGGVVQMIDDYGHHPSEVRATLNAARAAFPGQRIVMVFQPHRFSRTRDFYEDFVAVLS 392

Query: 409 LADIAIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D+ ++ D     E      D   +   I   G    +   +         ++L   D+
Sbjct: 393 DCDLLVLLDVYSAGEDHIAGADARSLARSIRQRGAIDPVFAPDIKSVPAVLCDVLEPGDL 452

Query: 462 LVVAGKGH 469
           L+  G G+
Sbjct: 453 LLTQGAGN 460


>gi|281421048|ref|ZP_06252047.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
 gi|281404966|gb|EFB35646.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
          Length = 445

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 135/363 (37%), Gaps = 42/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G   + +G    I          
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIIKSAG---YDVGLAGNIG--------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +   +       N+  DH+D ++  
Sbjct: 139 -------KSLALQVAETPHKYYVIELSSFQLDN--MYKFRANVAILLNITPDHLDRYEFK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKK 281
            Q Y +AKMR+ +    ++S      D   +KE+ K    +  C       +G    ++ 
Sbjct: 190 MQNYTDAKMRITQNQTEEDSFIFWNDDPIVTKELAKYNLKSHLCPFSEFKEEGCVGFIED 249

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                 K ++    + +       L G+  +YN+L A   C  +GID   + + L     
Sbjct: 250 -----GKYKLNFPSDFEMPQADMSLRGKHNIYNSLAAGLACNIVGIDHETLHKGLSDFPG 304

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E VG   +G     D   T+  ++     + ++T+  I+++   G D+      I
Sbjct: 305 VEHRLEKVG-KFQGVYYVNDSKATN--VDACWYALESMTTPTILII--GGKDKGNDYNQI 359

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +    A I  +  DN +  D          GIP   +  +  + +    E+    D 
Sbjct: 360 KDLVKEKCAGIVYLGADNQKLHDNFD-----ALGIP-VRDTHSMKDCVAACQELAKPGDT 413

Query: 462 LVV 464
           +++
Sbjct: 414 VLL 416


>gi|163760789|ref|ZP_02167869.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
 gi|162282111|gb|EDQ32402.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
          Length = 474

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 146/436 (33%), Gaps = 53/436 (12%)

Query: 50  VGNKED-GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            G +   GH     A   G AE +VVS+A    +          + VV        L   
Sbjct: 51  KGIEVHIGH----SAANLGDAEVVVVSTAIKKSNPELMAARERLLPVVRRAEMLAELMRF 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           R       N +A+ GT GK++  S V  + +  GL    I     I+++  + R+     
Sbjct: 107 R-------NAIAIGGTHGKTTTTSMVATLLEAGGLDPTVING-GIINAYGTNARMGEGEW 158

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + +    S                          +       TN+  +H+D++ T  A  
Sbjct: 159 MVVEADESD--------------------GTFLKLPAEIAVITNIDPEHLDHYGTFDAAR 198

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIH 286
            A  +   E +P     ++  D    + ++ R  +   RV++ G   +  +         
Sbjct: 199 AAFRQF-AENVPFYGFGVMCLDHPEVQALVSRIEDR--RVITYGENPQSDVRFFNHRMDG 255

Query: 287 NKQQVTISVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                 + +  +         D   P+PG+  V NA+ A  +   +G+    + + L + 
Sbjct: 256 PVSVFDVVINSRKTGETVELKDLRLPMPGKHNVSNAVAAIAVAFELGLTPDQISKGLGQF 315

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  RF   G+   G  I+ DY H    ++ +L   R    GR+I V            
Sbjct: 316 GGVKRRFTHTGSW-NGVEIFDDYGHHPVEIKAVLSAARDACQGRVIAVHQPHRFSRLSSL 374

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                   + A+  ++       EDP        +   +  G    +   +   A+   I
Sbjct: 375 FDDFSACFNDANTVMLAPVYAAGEDPIEGIDSAHLVMSMKAGGHRDVRLVDGPSALAPII 434

Query: 454 -EMLNKQDVLVVAGKG 468
            ++    D +V+ G G
Sbjct: 435 ADIAKPGDYVVLLGAG 450


>gi|171316209|ref|ZP_02905432.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098623|gb|EDT43420.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 465

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 145/427 (33%), Gaps = 48/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA A+VVS+A    +       +  + +V      L+       G    
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQRAVM-LAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                  + +S
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLD-----PTFVIGG----------------RLIS 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             ++  +       +           +  +    TN+  DH+D +    A        F 
Sbjct: 145 AGANARLGTGDFIVAEADESDASFLNLYPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DD   ++++         V+  G         + + A   +   T+ 
Sbjct: 205 QRLPFYGSAVVCVDDPNVRQIIPFISKP---VVRYGLSPDAQVRAEDIDARDGRMHFTVI 261

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            EG+     +  LPG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 352 NSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
           ++ GG   +  DY H    +   +   R    GR +V+        + +      +  L 
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 409 LADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGN-----RIEAIRTAIE-MLNKQDV 461
             D  ++T+     E        + +      + K +      ++ +  A+  +    DV
Sbjct: 382 TVDALVLTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVASVDGVPDALAGVARNGDV 441

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 442 VITMGAG 448


>gi|282857260|ref|ZP_06266500.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
 gi|282584910|gb|EFB90238.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
          Length = 476

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 145/408 (35%), Gaps = 37/408 (9%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFV 133
           A  L  +S+ I ++ P L     ++   L  + L       +N + V GT GK++  S +
Sbjct: 72  AVDLLAYSSAIPASNPELAEARRKEIPVLQRAELLSLLFDSKNGIGVAGTHGKTTTTSLI 131

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I +++      + PT  +     D        +     ++ L     +          
Sbjct: 132 SYILEQA-----DMQPTIAVGGELCDIGCNAKLGMG-EYMVAELDESDESF--------- 176

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                 +    +    TN+  DH++ +   QA  +A  R F     +     +  +DA  
Sbjct: 177 ------EYFHPLYSVVTNVDWDHVNQYPDLQAVIDAFGR-FLRNTKEGGKLFLCGEDAGV 229

Query: 254 KEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDF-DFLFPLPGE 309
           K+V++   N    R+   G    F         H    +  T   +G+        + GE
Sbjct: 230 KKVIEALPNDLKNRMYLFGRDPSFDFYAADIQYHCGGGLNYTFYAKGRKMGTIELVISGE 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V ++L A G+   +G+   +V + +   H    R +          +Y DY H    +
Sbjct: 290 HNVLDSLAACGVAHELGVSFDIVQKAMRMFHGAKRRLQLRAMCPDNILVYDDYGHHPREI 349

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI--AIVTDDNPRSEDP-- 425
           E  L  +R +   R I++      R    + +  + A  LA +   ++       E P  
Sbjct: 350 EATLNAVRLMYPDRRILLIFQP-HRYTRTQALFDRFAEVLASVPQVVLLPIYAADEQPIP 408

Query: 426 ----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               E I A +       +   N++EA   A+ ++   D+++  G G 
Sbjct: 409 GVSSELIGATVAKLGGSCVLAQNKVEAAGRALSLVRPGDLILTEGAGD 456


>gi|197334581|ref|YP_002156996.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
 gi|226706333|sp|B5FB34|MURC_VIBFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197316071|gb|ACH65518.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
          Length = 487

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 154/446 (34%), Gaps = 56/446 (12%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R  Q G  IF         GH      + + A  +VVS+A    +          I V+ 
Sbjct: 62  RLAQKGAEIFF--------GHQ--ASNVEK-ASVVVVSTAIDPSNPEIVAAKENRIPVIR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  +   QI   +GL    +     + + 
Sbjct: 111 RA-EMLAELMRYRHG------IAVAGTHGKTTTTALTTQIYSEAGLDPTFVNG-GLVKNA 162

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             + R    S  +L   ++       + +                ++ +    TN+  DH
Sbjct: 163 GTNAR--LGSSRFL---IAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK- 275
           +D +             F   LP    A++  DD   +E++ +      +V++ G+    
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELLPQVSR---QVITYGFSDDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + L     +  +   T+  + + D D +  +PG+    NA  A  +     ++   +L 
Sbjct: 260 DVRLINYRQVGQQSFFTVQRKDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILT 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            L        RF+ +G   T +    +  DY H    +++ +K  R      R++++F  
Sbjct: 320 ALLNFEGAGRRFDQLGEFETGNGSAMLVDDYGHHPTEVDVTIKAARAGWAEKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGN 444
                           LD  D+ I+ D     E P        +   I            
Sbjct: 380 HRYSRTRDLYDDFANVLDNVDVLIMLDVYSAGETPIAGADGRALCRTIRGRGKIDPVFVP 439

Query: 445 RIEAIRTAIE-MLNKQDVLVVAGKGH 469
            IEA+   +  ++ + D+++  G G 
Sbjct: 440 TIEALPPVLANIIQEGDLILTQGAGD 465


>gi|166365487|ref|YP_001657760.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
 gi|166087860|dbj|BAG02568.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
          Length = 877

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 138/373 (36%), Gaps = 31/373 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ILA+TGT+GK++ +  +  IC+++G     +G T+T   +  D  +          A  
Sbjct: 489 PILAITGTNGKTTTSRLISHICRQTGKV---VGFTTTDGVYIDDYLVEKGDNTGPYSASM 545

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LF 234
            L    V    +E +  G+ +  L   +   G   N+  DH+           AK++ + 
Sbjct: 546 ILKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVV 605

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVGYQGKFIHLKKV 282
            E++  E  A++ ADD  +  + ++                    +  G          +
Sbjct: 606 AEVVSAEGYAVLNADDPLTVGMAEKVKGRVAYFSMSPDNPIIHDHIRRGGMAAIYENGYL 665

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341
             +  +  + I  E  +          F + NAL A       GID  L+ + +      
Sbjct: 666 SILEGEWTLRIE-EAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFKPS 724

Query: 342 ---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGR            I  DYAH     E +   +    SG  + V G  GDR    
Sbjct: 725 VAQTPGRMNLFDLGHHHALI--DYAHNPAGYEAVGGFVGNW-SGEKVGVVGGPGDRRDDD 781

Query: 399 RPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRT 451
             ++GK++  + D  IV +DN  R     ++   I+ GI             +  EA+  
Sbjct: 782 LILLGKLSALMFDRIIVKEDNDTRGRRRGEVADLILRGISQENASLRPEVILDETEALEK 841

Query: 452 AIEMLNKQDVLVV 464
           A+  +++  ++V+
Sbjct: 842 ALSTVSEGGLVVI 854


>gi|215446386|ref|ZP_03433138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T85]
          Length = 384

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 5   IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 63

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 64  ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 110

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 111 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 169

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 170 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 229

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 230 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 289

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 290 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 346

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 347 RAELRPGDVVLV 358


>gi|159038978|ref|YP_001538231.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
 gi|189029031|sp|A8LX80|MURC_SALAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157917813|gb|ABV99240.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
          Length = 511

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 147/413 (35%), Gaps = 45/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V SSA               + V+  +       A+ + G+     +AV GT GK
Sbjct: 79  GVDTVVYSSAIPQDHLELVEARRRGLRVLHRSEA----LAAAMTGR---RTVAVAGTHGK 131

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++  S V  + Q++G+    +  G  S + S A                           
Sbjct: 132 TTTTSMVTMVLQQAGVDPSFVIGGEISEVGSGAHHGTGEY------------------FV 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + S      +R           TN+  DH++ +        A    F  L   +   
Sbjct: 174 VEADESDRSFLIYR-----PFVSIITNIEADHLNTYGDLANLEAA-FADFARLTDPDGFV 227

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           +  ADDA S+ + +     G RV + G      + L ++ +     +    V+G+   +F
Sbjct: 228 VTCADDAGSRRLAETLRAEGRRVYTYGTSTDADLRLTEMASSTRGIRYLAEVDGRSLGEF 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG     N+  A      +G+        L     V  RFE  G       +Y +Y
Sbjct: 288 RLPVPGRHMGLNSASAVLAAYLLGLPLDAAEAALAAFPGVRRRFERKGVADN-VLVYDEY 346

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           A+    + + L+ +R +   GR+IVVF                 AL +AD  ++ +    
Sbjct: 347 AYHPTPIALALRTLREVAGDGRLIVVFQPYRLYRTRDLQTEIAEALAIADELVLLEVFGP 406

Query: 422 SE--DPEKIRAEIIHGIPGFIEK---GNRIEA--IRTAIEMLNKQDVLVVAGK 467
            E  +P +  A +I  +P   ++    +  EA  +  A       DV+V  G 
Sbjct: 407 GELREPGEGSAALIEAVPLPADRKVFVDSWEAAPVEVA-RRARPGDVVVTMGA 458


>gi|307084810|ref|ZP_07493923.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
 gi|308365624|gb|EFP54475.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
          Length = 392

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 13  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 71

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 72  ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 118

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 119 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 177

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 178 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 237

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 238 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 297

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 298 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 354

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 355 RAELRPGDVVLV 366


>gi|210616990|ref|ZP_03291325.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
 gi|210149513|gb|EEA80522.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
          Length = 458

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 141/420 (33%), Gaps = 57/420 (13%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G + +V ++A     ++F+   R N P+L   +  + L    +       +  +AV+GT 
Sbjct: 69  GIDVVVYTAAIHEDNEEFAEAKRQNLPML---SRAELLGQLMTNY-----KTPIAVSGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  +   +G     I     + +   + R+ +   +++ +A  Y +S     
Sbjct: 121 GKTTTTSMLSHVL-LAGEKDPTISVGGILKAIGGNIRVGSSD-VFVTEACEYTNSFLHFF 178

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                 G   N+  DH+D+ +      N+    F  LLP +   
Sbjct: 179 -------------------PKIGIILNVEEDHMDFFKDIDDIRNS-FHQFAALLPADGAL 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFD- 301
           +I  +      +        C++++   +    +             +  +   G+  D 
Sbjct: 219 VINQNIEGINSI---TDGLDCKIITYSERQPADYSASEIRFDEIGNASFDLLRHGEYVDR 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G   V NAL    +C  + I   ++ + +        RF++ G    G  I  D
Sbjct: 276 ITLAVAGNHNVSNALAVIAVCEQLEIPLDIIKKGILSFTGTDRRFQYKG-ERDGVTIIDD 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    +   L + +      I  +F                 AL LAD  ++ D    
Sbjct: 335 YAHHPTEIRATLTSAQNYPHKDIWCIFQPHTYTRTKAFFDEFAEALSLADHVVLADIYAA 394

Query: 422 SED----------PEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E            EKI+      +  P F E  N +      I      D+L+  G G 
Sbjct: 395 RETDTLGMSSAALTEKIKELGTDAYYFPSFEEIENFVS--EKCIH----GDLLITMGAGD 448


>gi|156935389|ref|YP_001439305.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166224688|sp|A7MIF0|MURC_ENTS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156533643|gb|ABU78469.1| hypothetical protein ESA_03247 [Cronobacter sakazakii ATCC BAA-894]
          Length = 488

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 151/451 (33%), Gaps = 68/451 (15%)

Query: 56  GHLFIPQAIAQ-----GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF---- 101
           G    P A+ Q     GA         ++ D S  + S     + P +V  +  +     
Sbjct: 48  GSDLAPNAVTQQLTALGATIYFNHRPENVLDASVVVVSSAISADNPEIVAAHEARIPVIR 107

Query: 102 -LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
              + A  +  +H    +AV GT GK++  + V  I   +GL    +      ++     
Sbjct: 108 RAEMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGTHAR 164

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-Y 219
              +         ++       + +                ++ +    TN+  DH+D Y
Sbjct: 165 LGNS------RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTY 203

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIH 278
           H   +         F   LP    A++  DD   +E++ R      ++ + G+ +   + 
Sbjct: 204 HGDFENLKQT-FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QITTYGFSEDADVR 259

Query: 279 LKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           ++       +   T+  + K +       PG     NA  A  +    GI+   +L  LE
Sbjct: 260 VENYRQTGAQGHFTLVRQDKPELHVTLNAPGRHNALNAAAAVSVATEEGIEDDAILRALE 319

Query: 338 KLHVVPGRFEFVG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
                  RF+F+G       N + G   +  DY H    ++  ++  R       ++++F
Sbjct: 320 SFQGTGRRFDFLGEFPLANVNGKSGTAMLVDDYGHHPTEVDATVRAARAGWPEKNLVMIF 379

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPG 438
                             L   D+ ++ D  P  E P            IRA    G   
Sbjct: 380 QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPAGEAPIPGADSRSLCRTIRA---RGKVD 436

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I   +  +       +L+  D+++V G G+
Sbjct: 437 PILVSDPAQVAAMLAPVLSGNDLILVQGAGN 467


>gi|260578085|ref|ZP_05846007.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603825|gb|EEW17080.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium ATCC
           43734]
          Length = 498

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 131/437 (29%), Gaps = 71/437 (16%)

Query: 70  AIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +    +  P+L   +    L                 + GT GK
Sbjct: 76  VVVTSFAAIPQDNPELVGAREAGIPVLRRSDILALL---------LQDRRAFLLAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q +G    F IG     +     N                    G   V
Sbjct: 127 TSTTSMAVAALQAAGQDPSFAIGGQLNRAGTNAHNGT------------------GEIFV 168

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S G                TN+  DH+DY +T+ AY       F   +      +
Sbjct: 169 AEADESDGSFLSY----SPEIAVVTNIEPDHLDYFKTEAAY-REVFENFAHRIVPGGFLV 223

Query: 246 IYADDAYSKEV-------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
           +  DD  S  +        +        V+  G          V      +   ++ EG 
Sbjct: 224 VCLDDPGSAALAENLIAGAEEGTPLPFTVVGYGTAEGCDAHPSVPPAAIIESTEVTAEGT 283

Query: 298 ------------------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                               +     +PG   V NA  AA   + +G D   V+  +   
Sbjct: 284 VSALRLTEEVKKAAEEAAGTYSLRVAIPGIHMVLNAAAAALGSVLLGADVDKVIGGIGGF 343

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQ 396
             V  RFE+ GT  +   +Y DYAH    +  +L   R       GRI+ VF        
Sbjct: 344 DGVRRRFEYHGTR-QDVEVYDDYAHHPTEVAAVLAAARQRVEARGGRIVAVFQPHLYSRT 402

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRT 451
                    AL LAD  ++ D     E+P +     I    I     ++ + +       
Sbjct: 403 INFADEFAEALSLADQVVLLDIFGAREEPVEGVDSRIIGNKISASTEWVFEPDFSNVSNV 462

Query: 452 AIEMLNKQDVLVVAGKG 468
              ++   D+++  G G
Sbjct: 463 VAGLVQPGDMVLTIGAG 479


>gi|126726619|ref|ZP_01742459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
 gi|126703948|gb|EBA03041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
          Length = 465

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 141/398 (35%), Gaps = 48/398 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
               +  +A   +  P  V ++   F   FA++ +    +   ++A+TG++GKS+ ++ +
Sbjct: 81  PSPNKVIAAAWAAGVP--VDNDIGLFFQSFATQSWDNFDQIPKVIAITGSNGKSTTSALM 138

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I  R G  S   G                         L    +     V +E SS+ 
Sbjct: 139 HHILTRVGRPSQLAGNIG-------------------RGVLDIDPAIDGEVVVLELSSYQ 179

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            D  R   +      FTNL  DH+D H     YF AK RLF E  P  +   +  D+A  
Sbjct: 180 TDLAR--SLTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGV--DEAEG 235

Query: 254 KEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VEGKDFDFLFPLP 307
           + +  +        RV+ V   GK   +     +             V   D   +  LP
Sbjct: 236 RMLANQLAEGPVDDRVIRVSVAGKLTGMGWNIFVKKGFLAETRKGKQVASIDLRSVAALP 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA +       +G+   ++         +P R + VG       I    A   +
Sbjct: 296 GVHNHQNAAMVYAALRTLGLAPKVIEAGFHDFAGLPHRSQPVGEIDGVKYINDSKATNVD 355

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S  M LK  + I      +V   G  ++ G   ++  +        I TD  P   D   
Sbjct: 356 SAAMALKAFKNIR----WIV--GGQAKEGGISSLVPLMGDVTRAYVIGTDPKPFLAD--- 406

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              EI H I   ++     EA++ A    N  DV+++A
Sbjct: 407 -LTEIDHVICNTMD-----EAVKQAASDANAGDVVLLA 438


>gi|77462652|ref|YP_352156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387070|gb|ABA78255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 477

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 162/464 (34%), Gaps = 58/464 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +FVA+  ++ DGH F+ +A+A+GA A +VS           +  + 
Sbjct: 25  TGVSIDTRSLGPGDLFVALT-DQRDGHAFVAEALARGAAAALVSR------RPEGLPEDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++ VTG+ GK+S    ++             G  
Sbjct: 78  PLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKTSTKEMLRATL----------GGQ 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+ +           P+ LA+  + +       V +  +  G         +      T
Sbjct: 128 GTVHAAEASYNNHWGVPLTLARMPADV---DFAVVEIGMNHPGEIAPLSRLARPHLALIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++   +  A    K  + E L P    AI+ A    S  +  RA   G   ++ 
Sbjct: 185 TVAAAHLEAFDSLSAIAEEKAAILEGLEP-AGRAILPAGLEVSPVLAARAAALGVPAVTF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L  +           S  G  F F    PG     NAL       A+G+D 
Sbjct: 244 GQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATLAAAEALGLDL 303

Query: 330 ALVLEHL-----EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-- 381
            +    L             R      +  G  +  D +     S+   L+ +  +    
Sbjct: 304 TIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASLELLAAMAPTD 363

Query: 382 -------GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEI 432
                  GR I + G   +    +  +   +A     A+IA+V    PR           
Sbjct: 364 GVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR----------- 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIE-------MLNKQDVLVVAG-KG 468
           +  +   + +  R E + TA E       +++  D+++V G KG
Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|226307038|ref|YP_002766998.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus erythropolis
           PR4]
 gi|259509779|sp|C1A0X4|MURC_RHOE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226186155|dbj|BAH34259.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus erythropolis
           PR4]
          Length = 502

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 95/468 (20%), Positives = 156/468 (33%), Gaps = 84/468 (17%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH     A+     G   +V + A   +D    + +     P+++        ++ AS +
Sbjct: 59  GHD--ADALDLLPGGPTVVVTTHAAIPKDNPELVEAARRGIPVIL------RPAVLASLM 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPI 168
            G        V+GT GK+S  S +    Q  G    F +G     +     +        
Sbjct: 111 QGN---RTFLVSGTHGKTSTTSMLVVALQHCGFDPSFAVGGELNEAGTNAHHGSG----- 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                        V     + S   L Q+            TN+  DH+DY  + +AY  
Sbjct: 163 ------------DVFVAEADESDGSLLQY-----DPNVIVVTNIEADHLDYFGSVEAYVK 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAI 285
                F + L      I   DD  S ++ KR   +     RVL  G       ++   A 
Sbjct: 206 V-FDDFVDKLRPGGLLIACLDDPGSADLAKRIVASGRSDIRVLGYG-SADAQEVEAGTAF 263

Query: 286 HNKQQVTISV--------------------EGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                V + V                    E         +PG     NAL A       
Sbjct: 264 EPVDGVEVGVRLLGFHAHDVGGVLQFQLAGENAARTVRMAVPGRHMALNALAALLAARDA 323

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI------ 379
           G ++  ++E L     V  RF+F G   RG R++ DYAH    +  +L     +      
Sbjct: 324 GAETEEIVEGLAGFGGVHRRFQFTG-RERGVRVFDDYAHHPTEVRAVLGAAADLVRPEDD 382

Query: 380 ------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR--AE 431
                  +GR+IVVF            +    ALDLAD  +V D     E+P      A 
Sbjct: 383 SSSTNSAAGRVIVVFQPHLYSRTAAFAVEFAQALDLADEVVVLDVYGAREEPMPGVSGAL 442

Query: 432 IIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETV---HIV 475
           +   +   +  + +  +A +    + +  D+++  G G  T+    I+
Sbjct: 443 VAQSVTKPVHYQPDLSQAPKQVAALAHPGDIVITMGAGDVTMLGKQIL 490


>gi|218296765|ref|ZP_03497471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
 gi|218242854|gb|EED09388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
          Length = 436

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 146/452 (32%), Gaps = 54/452 (11%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           PE + + +   +      + ++   S  +  G++FVA+ G++  G  F  +A+A+GA  +
Sbjct: 19  PEWVAEATGGRLHPGGGPVRDLHWHSGQVGEGFLFVALPGSRAHGREFAGEALAKGASLV 78

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +                    + V++  K L      L    P  ++AV G+SGK++   
Sbjct: 79  LSDRPGRAT------------VEVEDPYKALIRLGRALRDLFPGPVVAVGGSSGKTTAKE 126

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + Q                    F         +P      L          V +    
Sbjct: 127 ALAQGL-----------------GFPAPEGNQNTAPPLARFFLKLPQEAPGAVVELGVDR 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G     ++  +      T LG +H+      +     +M L +  +   S         
Sbjct: 170 VGEMAELMELARPDLAVLTALGEEHLLAFGDLKGVVEEEMGLLKAPMALVSQ-------- 221

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            +KEV+  A        + G+       + +  +  + +       +      P PG   
Sbjct: 222 QAKEVL-LAFGHRVDWPTYGFGQATFRGEGLELLPQESRFRY----RGLPVRVPYPGLGP 276

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
              AL A      +G D   V E L  L + PGR E       GG ++++ A+ +N L +
Sbjct: 277 ALGALAAMAAAEVLGWDLLEVAERLAHLRLPPGRMERREI---GGVVFLNDAYNANPLSV 333

Query: 372 ILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
                      GR   V G   +  +    +  ++A + A + +     P    P     
Sbjct: 334 KAGLAWLAAQPGRKWAVLGEMRELAEKALELHLEVAEEAARLGLT----PLYLGPFAKAQ 389

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             + G        +   A+      +   D++
Sbjct: 390 AALGGEA----VEDLEAALAWLKARVRPGDLV 417


>gi|119953103|ref|YP_945312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
 gi|119861874|gb|AAX17642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
          Length = 464

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 132/416 (31%), Gaps = 40/416 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEV-SSDSRHIQAG----WIFVAIVGNKEDGHLFIPQA 63
           +D  + +  +         +KI    S DSR I A      ++ A  G++ DG  F+   
Sbjct: 7   EDILDSLKDIKFVGYASSMQKIVSFYSLDSREINAKNSSASLYFAYKGDRVDGFSFVEYL 66

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           I  G +  V S            R    + L+  N    L   A+    +     +A+TG
Sbjct: 67  IDIGVKCFVCSKDCESLCLEYLNRDENLVFLLTSNVVILLQNLAAHFITRTSFKRIAITG 126

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    +  I         +     T  +   D              L     +  
Sbjct: 127 SNGKTTTKEMLYSILSE------RYKTCKTWGNLNSDIG-------LPLSILRTEGDEEY 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               V  S  G      + +       TN+   H+   +  +     K ++         
Sbjct: 174 AVFEVGISYIGEMNLLAEILNPEIVIVTNISYAHMQAFEDLEIVTAEKGKIMT---KSTQ 230

Query: 243 PAIIYADDAY--SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             I+     Y     VM ++ N G  +        F  L+         +       K F
Sbjct: 231 MVILNESCPYHLHLRVMAKSINPGINIFYF----DFHSLQIRSFAFVNDKFFYDFTYKGF 286

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D+   LPG+  ++NA+    L + +G+    +   L       GR E +    +   I  
Sbjct: 287 DYSILLPGQHNIFNAISCIHLALLLGLSENEIRNGLLHADFQKGRAELLRV--KDYLILN 344

Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           D Y     S   + + I  +   G+  ++         G    +GK A ++   AI
Sbjct: 345 DSYNGNLGSFMALKEMILGLEIKGKKFIIL--------GAFKELGKFAYEVHKTAI 392


>gi|332363491|gb|EGJ41273.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK355]
          Length = 459

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 143/426 (33%), Gaps = 59/426 (13%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLS---- 103
           DG  F         + +G + +       L D    +    P +  DN    + L     
Sbjct: 48  DGKTFEENPAAQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDNDMVVRALEKKIP 107

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       I+ +TG++GK++  + + Q+    G +    G    I   A 
Sbjct: 108 VITEVELAYLISE---APIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPAS 161

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
               T  S   L   LS     G+                           TNL   H+D
Sbjct: 162 QVAQTASSKDTLVMELSSFQLMGIEAF-----------------HPQIAVITNLMPTHLD 204

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK  + + +   +   + +  D ++KE+  +A        +         
Sbjct: 205 YHGSLEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQAQATVVPFSTTE------- 256

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            K   A      +T   E         +PG   + NAL    +    GID+  + E L  
Sbjct: 257 -KVDGAYLEGDVLTFRGEAIMQAAEIGVPGSHNIENALATIAVAKLRGIDNQTIKEVLSA 315

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R ++VG  +     + + + ++N L    K +        +++   G DR    
Sbjct: 316 FGGVKHRLQYVGQVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEF 371

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             ++  I   L  + I+    PR +     RA    G+  +++  +  +A   A +    
Sbjct: 372 DELVPDIKG-LKKMVILGQSAPRVK-----RAADQAGV-SYLDATDVRDAAHKAFDQAKP 424

Query: 459 QDVLVV 464
            D++++
Sbjct: 425 GDIVLL 430


>gi|82703368|ref|YP_412934.1| cyanophycin synthetase [Nitrosospira multiformis ATCC 25196]
 gi|82411433|gb|ABB75542.1| Cyanophycin synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 856

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 134/377 (35%), Gaps = 35/377 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTGT+GK++    +  I    GL    +G TST   + +  R+ T        A  
Sbjct: 470 PVVAVTGTNGKTTTVRMIANILDCQGLR---VGMTSTDGVYIEGQRIDTGDCSGPKSARK 526

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID--YHQTQQAYFNAKMR 232
            L    V    +E +  GL +  L   +      TN+G  DH+   Y  T +     K  
Sbjct: 527 VLLHPDVDAAVLETARGGLLREGLAFDRCDVAVVTNIGVGDHLGLSYINTVEDLTAVKRI 586

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---- 288
           + + + P    A++ A D +   V   A +   +V           + K  A   +    
Sbjct: 587 IVQNVKPGTGVAVLNAADPF---VAGMAAHCPGKVTFFARDPDNPVIAKHRAQRKRVVYV 643

Query: 289 ---------QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                          +              FQ+ NA+ A     A+G+D  ++   L   
Sbjct: 644 EDDAIVAAEGNFEYRLPFAGIPVTQNGAIAFQIENAMAAIAAGWAVGLDWQIIRGGLANF 703

Query: 340 ----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
                  PGRF F     RG  +  DY H  +++  ++  I  I + R  VV    GDR 
Sbjct: 704 VSDMQTAPGRFNFFT--HRGATLIADYGHNVDAIRALVSAIDKIPAKRRSVVISGAGDRR 761

Query: 396 QGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIE------A 448
                   +I  D  D  ++  D   R     ++ + +  G+       N  E      A
Sbjct: 762 DEDIRRQTEILGDAFDEVVLYQDQCQRGRADGEVLSLLRQGLEKAKRTRNVKEIYGEFGA 821

Query: 449 IRTAIEMLNKQDVLVVA 465
           I  A + L + ++ ++ 
Sbjct: 822 IDAAFDNLKEGELCLIL 838


>gi|113866801|ref|YP_725290.1| cyanophycin synthetase [Ralstonia eutropha H16]
 gi|113525577|emb|CAJ91922.1| cyanophycin synthetase [Ralstonia eutropha H16]
          Length = 877

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 134/375 (35%), Gaps = 32/375 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTGT+GK+ VA  V ++ Q SG      G   +   F    ++ +           
Sbjct: 484 PVVGVTGTNGKTVVARLVARLLQLSGK---HTGLACSDGLFLDRRQVESGDRANWESGHR 540

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI-DYHQTQQAYFNAKMRL 233
            L ++ V     E  S  +    L   +   G  TN    DH+ DY+   +      +R 
Sbjct: 541 ILMNRAVEAAVFENDSGSILSEGLAYDRCQVGVVTNFDQPDHLGDYYVEDEDRMYNVLRT 600

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN------ 287
             +++ +   A++ A D     +++ A      V+  G   +   +    A         
Sbjct: 601 QVDVVLETGAAVLNARDE---RLVEMAGLCDGDVIFFGLTPELPAIVSHRAAGKRAVYLR 657

Query: 288 --------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                       T  V+       +     FQV N L A     A+GI + L+   +   
Sbjct: 658 EGKIVLATGSSETALVDVAAVPLTYAGRVAFQVENVLAAVAAGWALGISNDLIRAGVVTF 717

Query: 340 H--VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V     F      G  + VD AH + +LE +   +    + R +VV+G G  R   
Sbjct: 718 DVGQVDVPGRFTLFERNGATVVVDDAHNAPALEALATALERFPAERRMVVYGAGMQRRDE 777

Query: 398 KRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIEKGNRIEAI 449
                G       D   + +D       P +E    ++  +  G  +   I++G R  AI
Sbjct: 778 DLVRQGMALGQHFDRVFLCEDRSVKRALPDAEARALLKQGLYEGRRVTKIIDEGTRASAI 837

Query: 450 RTAIEMLNKQDVLVV 464
            TA+  L   D+LV+
Sbjct: 838 ETALSQLVPGDLLVL 852


>gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 445

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 163/420 (38%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   + L  +G       +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 148 ----PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F      +   ++ +DD + + + +       +  S+  +  F   ++   
Sbjct: 202 DYAHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEQEADFWLERETGR 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +  I+ +        PL G     N + A  LC A+G+    ++EH++    +P 
Sbjct: 256 LKQGNEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALIEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   
Sbjct: 310 RVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A     + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 365 LAGKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|118469061|ref|YP_888503.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium smegmatis
           str. MC2 155]
 gi|166224705|sp|A0R015|MURC_MYCS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118170348|gb|ABK71244.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 482

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 102/278 (36%), Gaps = 12/278 (4%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D+  ++QAY  A    F E +      ++  DD  +  +  R    
Sbjct: 183 PNVAVVTNIEADHLDFFGSEQAYT-AVFDSFVERIAPGGALVVCTDDPGAAALADRTDAL 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           G RVL  G  G  +    +            + ++ E         +PG     NAL A 
Sbjct: 242 GIRVLRYGSTGDNLAGTLLSWEQQGTGAVAHIRLAGEHNPRAVRLSVPGRHMALNALAAL 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                IG  +  VL+ L     V  RFE VGT + G R++ DYAH    +   L+  RT+
Sbjct: 302 LAAREIGAPTDSVLDGLAGFEGVRRRFELVGTAA-GARVFDDYAHHPTEVRATLEAARTV 360

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR--AEIIH 434
                GR++V F                 AL +AD  +V D     E P      A +  
Sbjct: 361 VDQNGGRVVVAFQPHLYSRTATFAHEFGAALSVADQVVVLDVYAAREQPMAGVSGATVAD 420

Query: 435 GIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKGHET 471
            +   +       A+      +    DV++  G G  T
Sbjct: 421 HVTAPVTYVPDFSAVAAHVASIARSGDVILTMGAGDVT 458


>gi|303232778|ref|ZP_07319463.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae
           PB189-T1-4]
 gi|302481264|gb|EFL44339.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae
           PB189-T1-4]
          Length = 503

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 134/414 (32%), Gaps = 49/414 (11%)

Query: 70  AIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +VVSSA   +  +          I        +LSL A           +AV GT GK+
Sbjct: 110 VVVVSSAILQTNPELVYAKEHGIAIWPRAKMLSYLSLHA---------KTIAVAGTHGKT 160

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +S +  +    G     +     I    ++ +    S            S G      
Sbjct: 161 TTSSMIATMLDHMGDDPSFL-----IGGIVEEYKTNGRSGKSDYFVCEADESDGSFMY-- 213

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  DH+D+++T           F +L+  +   +I 
Sbjct: 214 --------------LNPHVAVITNIEADHLDHYKTFDNLTRT-FAAFMDLVGSDGTVVIC 258

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLF 304
            D+   + +   A  +   V++ G+     ++  + A  +    +  V    G++     
Sbjct: 259 GDNPTCRAL---AQASSRHVVTYGFDATCDYVCTLGANTHTITNSFQVRCPSGEELAITL 315

Query: 305 PL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
              PG     NA  A     A+G+D     + L        RF  +GT      +  DY 
Sbjct: 316 TANPGTHNALNATAAIAAAGALGLDVYAAAKALCTFKGAHRRFTHMGTW-NDICVVDDYG 374

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    ++  L   + +   RI+ VF                 A   AD+ IVTD     E
Sbjct: 375 HHPTEIKATLAAAKNLQFKRIVCVFQPHRYTRTQALMNEFADAFVDADVVIVTDVFSAGE 434

Query: 424 DP------EKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P      + +   I    P  I      +   +   IE+L   D+L+  G G 
Sbjct: 435 TPIPGVTGQHVAQLIAKRHPSCITESIPQKKAVVNRLIELLQPGDLLITQGAGD 488


>gi|256845952|ref|ZP_05551410.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_36A2]
 gi|256719511|gb|EEU33066.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_36A2]
          Length = 468

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 142/418 (33%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + ++ S+A    +   +   N  I       K   L A  L     E  +A+ GT G
Sbjct: 67  KGVDYVIASTAIKETNPELSYAKNNGI----TLLKRGELLAKLLNR---ETGIAIAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    E +   +  AI
Sbjct: 172 FM---------------NPKYAVITNIDADHLDVHGNLDNI---KKSFIEFISHTQKEAI 213

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    KE + R          S+  +   I  + +     K    + +  +   +F 
Sbjct: 214 ICMDCENLKEAITRLPKGKSVITYSIKDENTSIFARNIRITDRKTIFELYINKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L +  G+    + E L K      R++ +         G  ++
Sbjct: 274 LNIPGEHNIQNSLPVIYLALKFGVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I + R++ +F               K A    D  I
Sbjct: 334 KVRIIDDYAHHPTEIKATLKAIKSIDTSRLVAIFQPHRYSRVHFLLDEFKDAFKDVDKVI 393

Query: 415 VTDDNPRSEDPE-KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I +EI+  H     IE  N  + ++  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEILKEHINHNNIEVMNEWKDVKRYVSRVKKDSTYIFMGAGD 451


>gi|259419223|ref|ZP_05743140.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
 gi|259345445|gb|EEW57299.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
          Length = 469

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 109/304 (35%), Gaps = 28/304 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + VEA       +RL          TN+  +H+++        +     F   +P   
Sbjct: 161 EWMVVEADESDGTFNRLPAT---IAVVTNIDPEHMEHWGDFDRLRDGFYE-FVSNIPFYG 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGK 298
            A+   D A  + ++ R  +   RV++ G+  +   ++ V   +        +    EG+
Sbjct: 217 LAVCCTDHAEVQALVGRISDR--RVVTYGFNAQA-DVRAVNLTYKGGVAHFDILLQAEGQ 273

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             +    P+PG+  V NAL A  +C  +G+    +   L     V  RF  VG    G  
Sbjct: 274 KIEGCTLPMPGDHNVSNALSAVAVCRHLGMKLDEIRAALAAFGGVNRRFTKVG-EVDGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  DY H    +  +LK  R    +   GR+I V                    + AD+ 
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQAIGSEGEGRVIAVHQPHRYSRLSSLFDDFCACFNDADVV 392

Query: 414 IVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVV 464
            + +     EDP     R +++ G+     +  R  AI       R   E     D++V 
Sbjct: 393 AIAEVFAAGEDPIEGASRDDLVAGLIRHGHRHAR--AILNEDDLLRLVREQARPGDMVVC 450

Query: 465 AGKG 468
            G G
Sbjct: 451 LGAG 454


>gi|148980589|ref|ZP_01816136.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
 gi|145961172|gb|EDK26488.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
          Length = 486

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 149/432 (34%), Gaps = 56/432 (12%)

Query: 64  IAQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDN------TRKFLSLFASRLYGK 112
           +++GA   +   A      S+   S  I    P ++          R+   + A  +  +
Sbjct: 64  VSKGATVYIGHQASNVADASVVVVSTAINEENPEIIAAREARTPIVRRA-EMLAELMRFR 122

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    +AV GT GK++  + V QI   +GL    +      S+       ++        
Sbjct: 123 HG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RI 173

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++       + +                ++ +    TN+  DH+D +            
Sbjct: 174 LIAEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFETLKQTFI 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
            F   LP    A++  DD   +E++ +      +V++ G+ +   I ++       + + 
Sbjct: 219 DFLHNLPFYGQAVMCVDDPVVRELIPQVSR---QVITYGFSEDADIRIENYVQEGQQGKF 275

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  EGK + D    +PG     NA  A  +     I    +L+ +        RF+ +G
Sbjct: 276 TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDHLG 335

Query: 351 TNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
               G     +  DY H    +++ ++  R+     R++++F                  
Sbjct: 336 EYETGNGVAMLVDDYGHHPTEVDVTIQAARSGWADKRLVMIFQPHRYSRTRDLYDDFANV 395

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLN 457
           L+  D+ I+ D     E P  I       +   I    +I+ I  A           ++ 
Sbjct: 396 LEQVDVLILLDVYSAGEKP--IAGADGRSLSRTIRGRGKIDPIFVADINTLPSVLANVIQ 453

Query: 458 KQDVLVVAGKGH 469
             D+++  G G 
Sbjct: 454 GGDLVLTQGAGD 465


>gi|215427536|ref|ZP_03425455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T92]
 gi|289750754|ref|ZP_06510132.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
 gi|289691341|gb|EFD58770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
          Length = 391

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 12  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 70

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 71  ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 117

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 118 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 176

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 177 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 236

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 237 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 296

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 297 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 353

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 354 RAELRPGDVVLV 365


>gi|215431086|ref|ZP_03429005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis EAS054]
 gi|289754267|ref|ZP_06513645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308369637|ref|ZP_07666768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
 gi|289694854|gb|EFD62283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308326954|gb|EFP15805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
          Length = 391

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 42/372 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 12  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 70

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 71  ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 117

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 118 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 176

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    + G+ QV NAL AA + +  G     V   L     V      V T   G 
Sbjct: 177 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGV 236

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRI-----IVVFGCGGDRDQGKRPIMGKIA---- 406
            +  D Y    +S+   L+ +  I            V G   +  +       +I     
Sbjct: 237 TVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 296

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------- 457
            LD++ + +V     RS         ++ G  G  E      A RTA+ + +        
Sbjct: 297 RLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALALL 353

Query: 458 -----KQDVLVV 464
                  DV++V
Sbjct: 354 RAELRPGDVVLV 365


>gi|256061487|ref|ZP_05451631.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella neotomae 5K33]
 gi|261325494|ref|ZP_05964691.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella neotomae 5K33]
 gi|261301474|gb|EEY04971.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella neotomae 5K33]
          Length = 471

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 136/421 (32%), Gaps = 49/421 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IVVS+A    +          + VV        L   R         +A+ GT GK+
Sbjct: 67  AEVIVVSTAIKKNNPELVAAREKLLPVVRRAEMLAELMRFR-------RAVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVAALLD-AGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  +   R+++ G   +                  + +  +        
Sbjct: 218 LDHPEVQALVSRIEDR--RIITYGSNPQAEVRFANQRMDGAASLFDVVIRSRKGEATEIK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NA  A  +   +GI S  +   L     V  RF   G+   G  I+ 
Sbjct: 276 DLRLPMPGLHNVSNATAAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTGSW-NGVEIFD 334

Query: 361 DYAHTSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           DY H    +  +LK  R       GR++ +                    + AD  IV  
Sbjct: 335 DYGHHPVEIRAVLKAAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAP 394

Query: 418 DNPRSEDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAIE-MLNKQDVLVVAGKGHE 470
                E+P       E++  I     +  R     EA+   +  +    D +V  G G+ 
Sbjct: 395 VYTAGEEPIEGVNSEELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGNV 454

Query: 471 T 471
           T
Sbjct: 455 T 455


>gi|313114779|ref|ZP_07800279.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622834|gb|EFQ06289.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 460

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 135/419 (32%), Gaps = 42/419 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  G + +V S+A S  +      ++  I  ++ +             +  +
Sbjct: 66  GHS-ADNVI--GTDMVVYSAAISKDNVELNAAASYGIPTIERSVLL------GYVSRLYK 116

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + V+GT GK++  S +    + +G       P++ I                    ++
Sbjct: 117 QSICVSGTHGKTTTTSMITTALELAGRD-----PSAVIGGKLP--------------LIN 157

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G     V  S    +      +        N+  DH+DY+ +       K     
Sbjct: 158 GYGKAGKGDDIVIESCEFAETFL--KLTPYLSVVLNIDNDHLDYYGSMGEL---KFAFKR 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L  +      ADD  + +VM   +    RV + G Q    +       +        +
Sbjct: 213 FALMTKFMIFANADDKNTMDVM---YTLDRRVRTFGIQNDGDYQALNVNEYKPGFFEFDL 269

Query: 296 EGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +         +PG   +YNAL    +C  +G+      +          RFE  G  
Sbjct: 270 KEWNKVTGHIRLAVPGYHNIYNALAMCAVCRFVGLTVEQCADAALNFKGAGRRFEVYG-E 328

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  +  DYAH    L   L   + +   R+I V                   L + DI
Sbjct: 329 CNGALVVDDYAHHPTELRATLTTAKEMGYKRLIAVHQPFTYSRTKMLFNDFVDVLKIPDI 388

Query: 413 AIVTDDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            ++T      E  DP    A++   IPG +   +  EA     +   + D+++  G G 
Sbjct: 389 TVLTPIMGSREPNDPTITSAKLAAQIPGSVLVNSLEEAAEWVKQNAREGDLVITLGCGD 447


>gi|19704788|ref|NP_604350.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|25008802|sp|Q8RDQ2|MURC_FUSNN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|19715125|gb|AAL95649.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 468

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 144/418 (34%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++ S+A    +   +   N  I ++    + L+   +R  G      +AV GT G
Sbjct: 67  KGADYVIASTAIKESNPELSYAKNNGIEILKRG-ELLAKLLNRETG------IAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    + +   +  AI
Sbjct: 172 FM---------------NPKYAVITNIDADHLDVHGNLDNI---KKSFIKFICHTQKEAI 213

Query: 246 IYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    KEV+ R          S+  +   I  K +     K    + +  +   +F 
Sbjct: 214 ICLDCENLKEVVTRLPEEKTVTTYSIKDESANIFAKNIKIEDRKTIFELYINKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L    G+    + E L K      R++ +         G  ++
Sbjct: 274 LNIPGEHNIQNSLPVIYLAFKFGVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I + R++ +F               K A    D  I
Sbjct: 334 RVRIVDDYAHHPTEIKATLKAIKSIDTSRLVAIFQPHRYSRVHFLLDEFKDAFVNVDKVI 393

Query: 415 VTDDNPRSEDPE-KI-RAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I   E+   I    +E  N  + I+  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEELKEHINHNNVEVMNEWKDIKRYVSRVKKDSTYIFMGAGD 451


>gi|328955353|ref|YP_004372686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
 gi|328455677|gb|AEB06871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
          Length = 478

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 161/460 (35%), Gaps = 36/460 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R       DSR + +  +FVA  G   DG+ F   A+  GA A+V++   S +  SA 
Sbjct: 22  SDRVCRGCVIDSRDVGSDAVFVAFPGEHVDGNDFAIAAVQAGAGAVVLTREPSRELCSAA 81

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            +    +   ++  +FL   A     +    ++ +TG+ GK++    V  +         
Sbjct: 82  DQRGCAVAYTNDAERFLLALAHDYRSRLGCPVVGITGSIGKTTTKDMVAALLSTRYRVHA 141

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG  + +                L                +  S+ G  +         
Sbjct: 142 TIGNRNNLIGMPLTVLSAPEDTQALILE-------------MGMSASGEIERLSRCAAPT 188

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI--------IYADDAYSKEVM 257
               T +G  HI    ++ A   AK  +   ++P  +P             DD  S    
Sbjct: 189 HAIITRIGTSHIGMLGSRDAIARAKAEIVSGMIPWSAPECERSPLLVLSSEDDFTSFISD 248

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYN 314
           + A  AG R+   G +       + C + ++   +  +   +G         PG   V +
Sbjct: 249 RFAEPAGVRIALAGTRADADVTVRRCRLDDQGCASFELSFRDGCQLKANLAAPGAHAVQD 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL-EMI 372
           A +AA L   +G+    ++     L +   R + +   S G +I  D Y  +  S+   +
Sbjct: 309 AALAAALAYDLGVSPRDMIAAFGALAITSHRQQ-IRLASGGAKIIDDSYNASPESMAAGL 367

Query: 373 LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKI 428
              +    + R I V G     G+R +    ++G   A    D+ +           +  
Sbjct: 368 DLLLALSGARRRIAVLGEMGELGERSERMHALVGAYAAAKQLDLLVCVGHEAARTMADAA 427

Query: 429 RAEIIHGIPGF-IEKGNRIEAI-RTAIEMLNKQDVLVVAG 466
           R   + G+P   IE  +   A+       L + D+++V G
Sbjct: 428 R---LMGMPAHRIEIASSAHAVLDRFGSGLGRGDLVLVKG 464


>gi|21674299|ref|NP_662364.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium tepidum TLS]
 gi|21647471|gb|AAM72706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium tepidum TLS]
          Length = 474

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 125/384 (32%), Gaps = 39/384 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDN 160
            L    L G+H   ++A  GT GK++  S V  + +  GL    +  G         + +
Sbjct: 95  QLVRRELIGRHTSIVVA--GTHGKTTTTSLVAWLLEAGGLLPGFLIGGIPENFGDGCRPS 152

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHID 218
                           LS  G      +         R   +  +       N+  DH D
Sbjct: 153 G---------------LSEPGFFVTEGDEYDSAFFDKRSKFLHYRPDIAIINNVEFDHAD 197

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFI 277
              +      +  RL   L+P     I+ ADD  S EV  +A    CRV + G  G    
Sbjct: 198 IFDSLDDIKKS-FRLLVNLVPSNGLLIVNADDPNSMEVSAKA---FCRVETFGLNGNAEW 253

Query: 278 HLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               +    +    T+  + +       PL G + V NAL A    I  G+    V   L
Sbjct: 254 TAADIATDTDGTSFTVVRDSEAIGRVKVPLFGNYNVMNALAATAAAIRAGVSFESVTRGL 313

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                   R E VG  + G  +  D+AH   ++ + L  I     GR I+          
Sbjct: 314 CSFKRPKRRMELVGEYAGGITLIEDFAHHPTAIRLTLGAIAEHYPGRRIIACFEPRSNTT 373

Query: 397 GKRPIMGKI--ALDLADIAIVTDDN-PRSEDPEK------IRAEIIHGIPGFIEKGNR-- 445
            +     ++      A I ++   N P    PE+      +  E+          G+   
Sbjct: 374 SRNIFQHELSECFGDAAIVVLGKVNRPERYAPEERLDAALLCRELKANGKRVFAAGSENY 433

Query: 446 -IEAIRTAIEMLNKQDVLVVAGKG 468
             + +R         DV+V+   G
Sbjct: 434 PEDIVRFIEAEQQPGDVVVLLSNG 457


>gi|308388622|gb|ADO30942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha710]
          Length = 445

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 164/418 (39%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++  DDA+ + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNVDDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATKD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIG--KKNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|300853418|ref|YP_003778402.1| cyanophycin synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300433533|gb|ADK13300.1| cyanophycin synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 874

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 156/396 (39%), Gaps = 38/396 (9%)

Query: 98  TRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +R   S     ++ K+ P  +++VTGT+GK++    +  I ++SG   + +G T+T   +
Sbjct: 459 SRNVASAIVDMMFDKYKPIPVVSVTGTNGKTTTTRLIAHILEKSG---YNVGMTTTGGIY 515

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             +  +          A + L+++ V    +E +  G+ +  L          TN+  DH
Sbjct: 516 VNNKCICKGDTTGYYSAKTILANRDVEAAVLETARGGIIKRGLAYDLADVAVITNITEDH 575

Query: 217 I--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           +  D   T +     K  L  E + K+   ++ ADD  S  ++ R  +    ++      
Sbjct: 576 LGIDGIHTMKDLAYVKS-LVGEAVKKDGYVVLNADDLVSISIINRIKST---IIMFSKNK 631

Query: 275 KFIHLKK--------------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
               L+K              +  +   +++    + +D          + V NA+ A  
Sbjct: 632 DNPVLRKNINSGGYGVYIKDNIMYVEKTEKIVPIAKVEDIRISLDGKLTYNVENAMAACA 691

Query: 321 LCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             + + ID +++ +  +  +      PGRF     N  G ++ +DY H     + +++  
Sbjct: 692 AAVGLNIDYSIIRKGFKTFYGDFSFNPGRFNMYDLN--GIKVVLDYGHNIEGYKAVIRGA 749

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG 435
           + +   R++ V G  GDR       +G I     D   + +D + R  +   I   +  G
Sbjct: 750 KNLKYNRLVGVIGVPGDRTDESVEKIGSIVGKNFDYVYIKEDKDRRGREIGAIAKILKVG 809

Query: 436 IP-------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +              +  EA+  AI+   + D++++
Sbjct: 810 VTKSGFDMNKVEVILDEKEALEKAIDTAKQGDLIII 845


>gi|255279944|ref|ZP_05344499.1| UDP-N-acetylmuramate--alanine ligase [Bryantella formatexigens DSM
           14469]
 gi|255269717|gb|EET62922.1| UDP-N-acetylmuramate--alanine ligase [Bryantella formatexigens DSM
           14469]
          Length = 459

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 142/440 (32%), Gaps = 60/440 (13%)

Query: 65  AQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
            QGA       A ++++      ++A I  + P            L  + L G+  +N  
Sbjct: 52  EQGAIVYYGQRASNIKEGTDLVVYTAAIHPDNPEYKAAADAGIPMLTRAELLGQLMKNYP 111

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV+GT GK++  S +  +      +         I      N       I+L +A  
Sbjct: 112 VPIAVSGTHGKTTTTSMISHLL--LADNDDPTISVGGILPVIHGNIRVGGGDIFLTEACE 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y +S                           G   N+  DH+D+ +      ++  R F 
Sbjct: 170 YTNSFLDFF-------------------PKIGIILNIDADHLDFFKDINDIRHS-FRRFA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ-QVTI 293
            LLP     II       +E+        CRV+  G Q G+    + +           +
Sbjct: 210 RLLPANGTLIINRAIPQVEEI---TDGLACRVIYYGVQEGRGYSAENISYNELACASFDL 266

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G+    +   +PG   V NA+ A  L   + I      + L+       RF++ G  
Sbjct: 267 KRDGELLGHYELCVPGIHNVENAVAALALADLLQIPRQTAQKGLKDFTGTDRRFQYKGKV 326

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I  DYAH    +   L   +      +  VF                 AL LAD 
Sbjct: 327 G-GVTIVDDYAHHPTEITATLTAAKNCPHETLWCVFQPHTYTRTKALMDDFAKALSLADK 385

Query: 413 AIVTDDNPRSE-DPEKIRAEIIH-----------GIPGFIEKGNRIEAIRTAIEMLNKQD 460
            ++ D     E D   I ++ +              P F E           +E     D
Sbjct: 386 VVLADIYAARETDNLGISSDTLREKIEALGTEAYYFPSFDEIE------TFLLEKCVHGD 439

Query: 461 VLVVAGKGHETVHIVTNGEK 480
           +L+  G G     IV  GEK
Sbjct: 440 LLITMGAGD----IVKIGEK 455


>gi|237736132|ref|ZP_04566613.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium mortiferum ATCC
           9817]
 gi|229421685|gb|EEO36732.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium mortiferum ATCC
           9817]
          Length = 458

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 126/374 (33%), Gaps = 37/374 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+ SSA   ++          I VV    + L++  +   G      +AV GT GK++ +
Sbjct: 73  IIASSAIKKENPEYIYALENGIKVVKRG-ELLAMLLNEECG------IAVAGTHGKTTTS 125

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S    +      +    G    I S A+  +            ++       + + +   
Sbjct: 126 SMAASVMLPLDPTIVVGGILPEIGSNAKPGKSNY--------FIAEADESDNSFLYM--- 174

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH++ H + +    +  +  ++         I +D 
Sbjct: 175 ------------NPTYSIITNIEADHLENHGSLENIIKSFSKFIDQ---TSKEVFICSDC 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +     N      S+  +   I+ + +     K    + ++G+    F   +PGE
Sbjct: 220 EILRGLAAIKENKKITRYSIKDKTADIYAENIEVGEGKTSYDVVIKGEKIGRFTLYIPGE 279

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N+L    L +  G++   +    EK      R+E V  +  G RI  DYAH    +
Sbjct: 280 HNILNSLPVIYLALEFGLEEKDIERAFEKFRGSKRRYE-VLYSGNGIRIIDDYAHHPTEI 338

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  L+   +I   +I V+F               K A + AD  ++       E    I 
Sbjct: 339 KATLQGATSIEDSKITVIFQPHRYSRVKFLLENFKNAFEKADEVVLLPIYSAGEK--DIF 396

Query: 430 AEIIHGIPGFIEKG 443
              I  +   IE  
Sbjct: 397 GVTIEDLQNVIENP 410


>gi|114777861|ref|ZP_01452792.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551852|gb|EAU54392.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
          Length = 458

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 145/423 (34%), Gaps = 49/423 (11%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A A    A+ +V+SSA +  +          I V+    + L+       G      
Sbjct: 57  IGHAAANVRDAQVVVLSSAINPANPEIAAAEKRGIPVIPRA-EMLAELMRMKQG------ 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +AV G+ GK+++ S +    + +G+  ++ IG   T +     +     +  +L      
Sbjct: 110 VAVAGSHGKTTMTSLIAHGMEAAGMDPTYIIGGRLTATG----SNARLGASPWLVA---- 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                      EA        RL          +N+  +H+D++        A  R F  
Sbjct: 162 -----------EADESDGSFLRLS---PTIAVVSNIDPEHLDHYGDFATLQEA-FRTFVN 206

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295
           L+P     +++ +  +   +    H     V + G      +HL +  A    Q  T + 
Sbjct: 207 LVPFYGRVVLHHEHPHVAALRLGLHKP---VTTYGSSLQADLHLLESRAGSEGQCFTAAS 263

Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G   +F  P+PG     NAL A  + + +GID   +   L     +  RF+   T+ 
Sbjct: 264 REHGNLGEFHLPMPGRHNAENALAAMAVLMDLGIDIETIRSALASFEGIQRRFQR--TSC 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
             G +  DYAH    +   L   R     R I V+F                 A D A+ 
Sbjct: 322 GTGVMVDDYAHHPREVLATLVAARDCWPERHISVIFQPHRFTRTRDLMDDFMGAFDTANE 381

Query: 413 AIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +      SE        + +   ++  G        N  EA     E L    ++++ 
Sbjct: 382 VSLLPIYAASEAAIEGVNSQALCQGMLARGHRHVSLLENLDEAAAAVREQLAAGHIVLLM 441

Query: 466 GKG 468
           G G
Sbjct: 442 GAG 444


>gi|296327764|ref|ZP_06870303.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296155111|gb|EFG95889.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 468

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 144/418 (34%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++ S+A    +   +   N  I ++    + L+   +R  G      +AV GT G
Sbjct: 67  KGADYVIASTAIKESNPELSYAKNNGIEILKRG-ELLAKLLNRETG------IAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    + +   +  AI
Sbjct: 172 FM---------------NPKYAVITNIDADHLDVHGNLDNI---KKSFIKFICHTQKEAI 213

Query: 246 IYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    KEV+ R          S+  +   +  K +     K    + +  +   +F 
Sbjct: 214 ICLDCENLKEVVTRLPEEKTVTTYSIKDESANVFAKNIKIEDRKTIFELYINKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L    G+    + E L K      R++ +         G  ++
Sbjct: 274 LNIPGEHNIQNSLPVIYLAFKFGVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I + R++ +F               K A    D  I
Sbjct: 334 RVRIVDDYAHHPTEIKATLKAIKSIDTSRLVAIFQPHRYSRVHFLLDEFKDAFVNVDKVI 393

Query: 415 VTDDNPRSEDPE-KI-RAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I   E+   I    +E  N  + I+  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEELKEHINHNNVEVMNEWKDIKRYVSRVKKDSTYIFMGAGD 451


>gi|317401778|gb|EFV82394.1| cyanphycin synthetase [Achromobacter xylosoxidans C54]
          Length = 856

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 141/386 (36%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           ++A    G+ P  ++AV GT+GK++       I   +G     +G T++   +  + R+ 
Sbjct: 461 MYADGDDGRIP--VVAVAGTNGKTTTVRLTAHILGTAGNR---VGMTNSDGVYVDNLRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDH--IDYH 220
           T        A S L    V     E +  G+ +  L   +      TN+G  DH  + Y 
Sbjct: 516 TGDCSGPRSARSVLMHPDVDAAVFETARGGILREGLAFDRCNVAIVTNIGMGDHLGLGYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM------------KRAHNAGCRVL 268
            T +     K  + + + P    A++ A D    E+              R H       
Sbjct: 576 STVEDLAVVKRVIVQHVHP-SGTAVLNAADPIVAEMASSCPGSITYFAEDRNHPVMATHR 634

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +  +     + A    ++        +          FQV NA+ +     A+G+D
Sbjct: 635 AQGLRVVYRDGDAIVAAQGGEETRF--PLAEIPLTRNGTIVFQVENAMASIAAAWALGLD 692

Query: 329 SALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            ++V   L             F   + RG  +  DY H  +++  +++ +  + + R  V
Sbjct: 693 WSIVRRGLATFVNDAQTAPGRFNVFDYRGATVIADYGHNPDAILALVRAVDAMPAKRRSV 752

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V    GDR      +  +I  +  D  ++  D   R     ++ A +  G+       + 
Sbjct: 753 VISGAGDRRDEDIRMQTEILGEAFDDVLLYQDQCQRGRADGEVLALLQQGLVNASRTRHI 812

Query: 446 IE------AIRTAIEMLNKQDVLVVA 465
            E      AI TA+  LN  D+ ++ 
Sbjct: 813 EEIHGEFLAIDTALARLNAGDLCLIL 838


>gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 455

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 171/439 (38%), Gaps = 54/439 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            + I +  + +VVS    L      +     + V+          A R      +NI+A+
Sbjct: 64  DEVIDK-VQLVVVSPGVPLSKRIVVLAHKKGVEVIGEI-----ELAYRFCK--SKNIVAI 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++  + V +I ++        G                     L    +  +S 
Sbjct: 116 TGTNGKTTTTTLVGEILKKQHKDVVVCGNIG------------------LPFIDTVETSS 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T   +E SS  L+   +   K + G   N+  DH++ H T + Y  AKMR+FE  + +
Sbjct: 158 ENTIFVLEISSFQLE--TIKYFKPMVGCILNITPDHLNRHMTMENYIKAKMRIFEN-IDE 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  D++ +++++  A              K  +  K      + ++  + EGK  
Sbjct: 215 TGYTVLNYDNSVTRDLIGLAKGNVIVF------SKNKNQFKNVVFIEENKIYFTFEGKTQ 268

Query: 301 DFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + +      +PGE  + NAL A    +  G+    +   L+    V  R EFV T   G 
Sbjct: 269 EVMRKDEIFIPGEHNLENALAAIACTLPFGVTKDTIEYVLKNFKGVEHRIEFV-TEINGI 327

Query: 357 RIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + Y D     +++ E  +    +      I++   G D+ +      G IA  +  + ++
Sbjct: 328 KFYNDSKGTNTDAAEKAISAFES-----PIILIAGGYDKGESFERFAGLIAKKVKKVFLL 382

Query: 416 TDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                  +  +KI +E+   G   F    N  EA+  + E     DV++++     +  +
Sbjct: 383 ------GQTKQKIASELEKIGYRNFELVSNLKEAVEKSFEYAKSGDVVLLS-PACASWDM 435

Query: 475 VTNGEKKMSVDCDIIREIL 493
             N E++  +  + + ++L
Sbjct: 436 FENYEQRGKMFKEYVNKLL 454


>gi|299143292|ref|ZP_07036372.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517777|gb|EFI41516.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 511

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 120/363 (33%), Gaps = 22/363 (6%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                 +   +L +TG+ GK+SV      I                + +           
Sbjct: 153 RNYKENYDLKVLGITGSFGKTSVKFISNTILSEG----------LRVKNTPSSFNTPMGL 202

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              +   L   +   V    + A   G  +     ++   G  T +G  H+   +T    
Sbjct: 203 SKIINNELENTTE--VFIAELGAKKRGEIEEVAALVQPNIGIITAIGPTHMHLFKTIDNI 260

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            N K  L E +LP+   AI   D+ Y K +  +      R      +   ++   +    
Sbjct: 261 QNTKYELIE-MLPENGVAIFNYDNDYVKPLADKTEIKTIRYGIKDVEKLDVYATDISVDE 319

Query: 287 NKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              +  + + E  + +    L G   + N L AA     +G+    +   ++K+  V  R
Sbjct: 320 MGSKFILHIRELGEIECESKLLGVHNISNLLAAASSAYILGLSLEQIANGMKKVEPVEHR 379

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVVFGCGG---DRDQGKRP 400
              V  NS  G I +D A  SN +     L  I     GR I++        D ++ +  
Sbjct: 380 LNIV--NSNSGVIVIDDAFNSNPIGFRAALDVISEFKDGRKIIITPGMVELGDMEEEENY 437

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +G       D  I+     R+    +   +  + +       +  EA +    +   +D
Sbjct: 438 KIGFEIAKTCDFVILVGKK-RTAPIYRGLEDAKYNLENVFRVNSLNEATQVLGHLSAPKD 496

Query: 461 VLV 463
           V++
Sbjct: 497 VVL 499


>gi|296116438|ref|ZP_06835052.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977031|gb|EFG83795.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 483

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 144/431 (33%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA  +VV+S    +D    + +   ++ V    + L+      +     
Sbjct: 59  GHD----AANLGAAQVVVTSTAVQRDNPEVLAARARLIPVVRRAEMLAELMRLRW----- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  + + + L    I     I ++  + R+ +   +       
Sbjct: 110 -SVAVGGTHGKTTTTSLVAAVLEAAKLDPTVING-GIIEAYGTNTRMGSGDWM------- 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RL  +       TN+  +H+D+  T++A   A    F 
Sbjct: 161 ----------VVEADESDGSFLRLPSV---ITVVTNMDPEHLDHWGTEEA-MQAAYDQFV 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    A++  D    ++++ R  +          Q   I  +KV          + V
Sbjct: 207 SNIPFYGFAVLCIDHPAVQQMIPRLSDHRIVTYGFSPQAD-IRAEKVITDKLGATFEVVV 265

Query: 296 -------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                    +   F  P+ G   V NAL A  + + + ID A +         V  RF  
Sbjct: 266 TSRNRNRSRRAGPFRLPMLGHHNVQNALAAIAVGVEMEIDDATIRSAFAAFKGVKRRFTR 325

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G    G  +  DY H    +  +LK  R   +  +I V                   ++
Sbjct: 326 TGETG-GITVIDDYGHHPVEIAAVLKAARQAGANNVIAVMQPHRYSRLQSLFNEFCTCMN 384

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-----------IEAIRTAIEMLN 457
            A   I+ D     E P +   +    + G  E+G+R            E I     +  
Sbjct: 385 DAGTVIIADVYAAGEQPIEGM-DRDALVEGLRERGHRSVVPLPGPEHLAEMIN---AIAR 440

Query: 458 KQDVLVVAGKG 468
             D +V  G G
Sbjct: 441 PGDFVVCLGAG 451


>gi|293604150|ref|ZP_06686558.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
 gi|292817375|gb|EFF76448.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
          Length = 856

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 139/386 (36%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           ++A    G+ P  ++AV GT+GK++       +   +G     +G T++   +  + R+ 
Sbjct: 461 MYADGDDGRIP--VVAVAGTNGKTTTVRLTAHLLGAAGNR---VGMTNSDGVYIDNLRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDH--IDYH 220
           T        A S L    V     E +  G+ +  L   +      TN+G  DH  + Y 
Sbjct: 516 TGDCSGPRSARSVLMHPDVDAAVFETARGGILREGLAFDRCNVAIVTNIGMGDHLGLGYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------------RAHNAGCRVL 268
            T +     K  + + + P    A++ A D    E+              R H       
Sbjct: 576 STVEDLAVVKRVIVQHVHP-SGTAVLNAADPIVAEMAASCPGSITYFAEDRNHPVLATHR 634

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +  +     + A    +++       D          FQV NA+ +     A+ +D
Sbjct: 635 AQGLRSVYRDGDAIVAAQGAEEIRF--PLADIPLTRNGTITFQVENAMASIAAAWALNLD 692

Query: 329 SALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             +V   L             F   + RG  +  DY H  +++  +++ +  + + R  V
Sbjct: 693 WEVVRRGLATFVNDAQTAPGRFNVFDYRGATVIADYGHNPDAILALVRAVDAMPAKRRSV 752

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V    GDR      +  +I     D  ++  D   R     ++ A +  G+ G     + 
Sbjct: 753 VISGAGDRRDEDIRMQTEILGAAFDDVLLYQDQCQRGRADGEVLALLQEGLVGAPRTQHI 812

Query: 446 IE------AIRTAIEMLNKQDVLVVA 465
            E      AI TA+  L   D+ ++ 
Sbjct: 813 EEIHGEFLAIDTALARLQAGDLCLIL 838


>gi|255692976|ref|ZP_05416651.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621289|gb|EEX44160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 444

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 138/384 (35%), Gaps = 37/384 (9%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPLILKLKAQGTPVISEIEFAGRYTNAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++    G                            ++     +  +E SS  LD   +  
Sbjct: 129 MNVGLAGNIG-------------------KSLALQVAEDHHDYYIIELSSFQLDN--MYN 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y +AK R+ +   P ++      D    +E+ K  
Sbjct: 168 FRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTPDDAFIFWNDDPIIKRELAKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     +   +   I   +   +   + +  ++E ++      L G+  +YN+L A  
Sbjct: 228 LKAHLYPFAAVKEDGAIAYVEDHEVKINEPIAFNMEQEE----LALTGQHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V    RG     D   T+  +      ++++T
Sbjct: 284 SANLAGITKENIRKALSDFKGVEHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           +    V+   G D+      I   +    + +  +   N +  D          G+P   
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEDLVREKCSALVYMGLHNEKLHDFFD-----RFGLPVAD 393

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            +    +A+  A ++  K + +++
Sbjct: 394 VQTGMKDAVEAAYKLAKKGETVLL 417


>gi|313837461|gb|EFS75175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA2]
 gi|314929329|gb|EFS93160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL044PA1]
 gi|314971668|gb|EFT15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA3]
 gi|328906993|gb|EGG26759.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium sp.
           P08]
          Length = 485

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 148/463 (31%), Gaps = 59/463 (12%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L   +   P+    +   +V  D+R +  G +++A+ G + DGH F   A   GA 
Sbjct: 5   DIATLAQWVEAAPVDDSAQVGPDVVIDTRKVTPGALYIALPGARVDGHDFTQAAQDAGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126
           A++ + +   Q          P L+VD+ R  LS  A  +     E     +A+TG+SGK
Sbjct: 65  AVLTTRSTDAQ---------VPHLIVDDGRAGLSRLARHVVATERERGMLTIALTGSSGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + QI +  G +   +G  +           +     +L                
Sbjct: 116 TSTKDMLAQILETFGPTVAPVGSFNNEIGAPLTACRSNEDTSFLVSE------------- 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A   G        +        N+G  H+    +++    AK  +   L P +  A++
Sbjct: 163 MGARGLGHISWLTSIVPPDVAMVLNVGIAHLGEFGSREVIAQAKGEIVGALAP-DGWAVL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVL--------SVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            A D     +  R H                   +     +       +   +     G 
Sbjct: 222 NAADNLIAGMASRTHGHIAWFSPDADHRRPDAEIEAWAESIHADDLDRHSFTLAARYGGT 281

Query: 299 DFD--FLFPLPGEFQVYNALVAAGLCIAI-----GIDSALVLE---HLEKLHVVPGRFEF 348
            +         G  QV NA+ A    +A      G D   V++    L            
Sbjct: 282 TWRSPVSLTTMGAHQVANAVAATAAALAALAMNDGTDEQTVIQIAGALSNAVSRSAMRMQ 341

Query: 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +   + G  +  D Y    +S+   L  +          V      RD   R +      
Sbjct: 342 LRERADGLVLVEDCYNANPDSMAASLAAMGH--------VLAARRARDPQTRGV-----A 388

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
            L D+  +  D+ R  + E  R     G    I  G+  E+I 
Sbjct: 389 VLGDMLELGADSAR-LNAESGRRAAQAGFDVIIAVGDEAESIA 430


>gi|237742550|ref|ZP_04573031.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|229430198|gb|EEO40410.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
          Length = 468

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 142/418 (33%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++ S+A    +   +   N  I       K   L A  L     E  +A+ GT G
Sbjct: 67  KGADYVIASTAIKETNPELSYAKNNGI----TLLKRGELLAKLLNR---ETGIAIAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    E +   +  AI
Sbjct: 172 FM---------------NPKYAVITNIDADHLDVHGNLDNI---KKSFIEFISHTQKEAI 213

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    KE + R          S+  +   I  K +     K    + +  +   +F 
Sbjct: 214 ICMDCENLKEAITRLPKGKSVITYSIKDENASIFAKNIRITDRKTIFELYINKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L +   +    + E L K      R++ +         G  ++
Sbjct: 274 LNIPGEHNIQNSLPVIYLALKFRVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I + R++ +F               K A    D  I
Sbjct: 334 KVRIIDDYAHHPTEIKATLKAIKSIDTSRLVAIFQPHRYSRVHFLLDEFKDAFKDVDKVI 393

Query: 415 VTDDNPRSEDPE-KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I +EI+  H     IE  N  + ++  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEILKEHINHNNIEVMNEWKDVKRYVSRVKKDSTYIFMGAGD 451


>gi|172037288|ref|YP_001803789.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. ATCC 51142]
 gi|254765994|sp|B1WQL2|MURC_CYAA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171698742|gb|ACB51723.1| UDP-N-acetylmuramate-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 518

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 137/421 (32%), Gaps = 58/421 (13%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +    +++A      PI    +    L               +AV GT GK++
Sbjct: 114 VICSTAIAHNNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTT 164

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++                  D  +     +   +  + + ++G   V+  
Sbjct: 165 TSSLIGYMLLKA----------------DLDPTIIVGGEVDAWEGNARIGAKGGYLVAEA 208

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S G             G  TN+  DH D++QT         ++FE      +   +  
Sbjct: 209 DESDGSLTKH----YPNIGIVTNIELDHPDHYQTLDDVVKT-FQIFE------TQCDLLI 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
                + V      A    L    +G    ++ V + H      +   G    +    +P
Sbjct: 258 GCLDCETVASELTPAITYSLDPS-KGADYTVQNVTSNHKGTFAEVWERGNYLGEIRLTIP 316

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  +   +G++ A++ + L        RFE  G    G     DYAH  +
Sbjct: 317 GSHNLSNALAAIAVGRKLGLNFAVIADALFTFAGAKRRFEQRG-QCNGITFIDDYAHHPS 375

Query: 368 SLEMILKNIRTITSGRII----VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +E  L   R+   G  I     +F                     AD+ I+TD     E
Sbjct: 376 EIEATLSAARSKVDGETISRVVAIFQPHRYSRTATFLKEFATCFKDADLVILTDIYSAGE 435

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                   + +   + +     I + +     + I   I      D+++  G G+    I
Sbjct: 436 VNLHNISGQDLAEAVENNHSQVIYEPSLKGLPQVIPDLI---KPGDLVLFLGAGN-LNQI 491

Query: 475 V 475
           +
Sbjct: 492 I 492


>gi|325959935|ref|YP_004291401.1| Mur ligase middle domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331367|gb|ADZ10429.1| Mur ligase middle domain protein [Methanobacterium sp. AL-21]
          Length = 486

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 161/445 (36%), Gaps = 29/445 (6%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117
           +  A  +G   +V  +       +A    + P+++        +        K       
Sbjct: 50  VEIARNRGVSCVVTQNPKGDAVKTAQ-ELDFPLIITPKIELANAFALRWSIEKFAPGSIR 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTGT+GKS+    +Q I   +G + +    + +  +   D  ++     + AK    +
Sbjct: 109 VVVTGTNGKSTTTHMIQNILNHAGYNCYTNTDSKSEFNTLIDPVVSDQISRFKAKTKKPI 168

Query: 178 SSQGVTHVSVEASSHGLDQHR----LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  V    V+     L +       D +K      TN+  DHI    + +  +      
Sbjct: 169 DAMVVEVSEVQGWMDKLMKDHAYLMTDAVKPDVLVLTNITMDHIGLINSIEETYAEIYGA 228

Query: 234 FEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
              +    + + A++  DD   +++          +     +  F     V +     + 
Sbjct: 229 LAAVEKSCQNNYAVLNYDDPLLRKMAGEIVTCPSIISHGSVEPDFNPDLTVKSDGIHHED 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++ +D  F      +  + N + A G C+A+ ID++ +   +     +  RF  +  
Sbjct: 289 ELFLKMEDLPFKS----KHFLQNTMAAIGACLALNIDTSAIKAGILSYSPLNRRFSIL-- 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI---ALD 408
             +   I  D+AH  + +   +K+   ++ G +I++F   G R +    +  +    AL 
Sbjct: 343 -YQEPLIIDDFAHNPDGITATIKSASEMSEGTLIILFAVRGSRGEVINRLNAEALASALQ 401

Query: 409 LADIA-IVTDDNPRSEDPEKIRAEIIHGIPGFIE--------KGNRIEAIRTAIEMLNKQ 459
             D + I+T  +   ++   + A  I  +   ++        K    +A+   +    K+
Sbjct: 402 AVDYSLIITSSSEVVDELNTVHASEIEVVRKVMDEHKLEHTFKEELEDALNYTLNTAKKE 461

Query: 460 DVLVVAGK-GHETVHIVTNGEKKMS 483
           D +++ G  G +    + N  K   
Sbjct: 462 DTILLIGAQGMDPAKDILNRIKGPE 486


>gi|17986863|ref|NP_539497.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|23502301|ref|NP_698428.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis 1330]
 gi|62290323|ref|YP_222116.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700247|ref|YP_414821.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis biovar
           Abortus 2308]
 gi|148560387|ref|YP_001259323.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ovis ATCC 25840]
 gi|161619378|ref|YP_001593265.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella canis ATCC 23365]
 gi|163843686|ref|YP_001628090.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis ATCC 23445]
 gi|189024556|ref|YP_001935324.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus S19]
 gi|225627881|ref|ZP_03785917.1| UDP-N-acetylmuramate--alanine ligase [Brucella ceti str. Cudo]
 gi|225852912|ref|YP_002733145.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis ATCC
           23457]
 gi|237815830|ref|ZP_04594827.1| UDP-N-acetylmuramate--alanine ligase [Brucella abortus str. 2308 A]
 gi|254689624|ref|ZP_05152878.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 6 str.
           870]
 gi|254694114|ref|ZP_05155942.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697766|ref|ZP_05159594.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702151|ref|ZP_05163979.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|254704688|ref|ZP_05166516.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|254708102|ref|ZP_05169930.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|254710471|ref|ZP_05172282.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|254714464|ref|ZP_05176275.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M644/93/1]
 gi|254717362|ref|ZP_05179173.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M13/05/1]
 gi|254730655|ref|ZP_05189233.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 4 str.
           292]
 gi|256031965|ref|ZP_05445579.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|256045060|ref|ZP_05447961.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113983|ref|ZP_05454766.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|256160164|ref|ZP_05457858.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M490/95/1]
 gi|256255370|ref|ZP_05460906.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti B1/94]
 gi|256257874|ref|ZP_05463410.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|256263607|ref|ZP_05466139.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369846|ref|YP_003107357.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella microti CCM 4915]
 gi|260169102|ref|ZP_05755913.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella sp. F5/99]
 gi|260546865|ref|ZP_05822604.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus NCTC 8038]
 gi|260565341|ref|ZP_05835825.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|260755152|ref|ZP_05867500.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 6
           str. 870]
 gi|260758371|ref|ZP_05870719.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 4
           str. 292]
 gi|260762197|ref|ZP_05874540.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884165|ref|ZP_05895779.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|261214414|ref|ZP_05928695.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 3
           str. Tulya]
 gi|261219193|ref|ZP_05933474.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M13/05/1]
 gi|261222572|ref|ZP_05936853.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti B1/94]
 gi|261315605|ref|ZP_05954802.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|261318043|ref|ZP_05957240.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|261322254|ref|ZP_05961451.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M644/93/1]
 gi|261752721|ref|ZP_05996430.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|261755381|ref|ZP_05999090.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|261758609|ref|ZP_06002318.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. F5/99]
 gi|265989074|ref|ZP_06101631.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|265991487|ref|ZP_06104044.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995325|ref|ZP_06107882.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|265998537|ref|ZP_06111094.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M490/95/1]
 gi|297248710|ref|ZP_06932428.1| UDP-N-acetylmuramate-alanine ligase [Brucella abortus bv. 5 str.
           B3196]
 gi|306843223|ref|ZP_07475834.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO2]
 gi|54037855|sp|P65469|MURC_BRUSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041505|sp|P65468|MURC_BRUME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|75496536|sp|Q57C79|MURC_BRUAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892694|sp|Q2YLY6|MURC_BRUA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222961|sp|A5VRH6|MURC_BRUO2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028976|sp|A9M689|MURC_BRUC2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028977|sp|B0CHL9|MURC_BRUSI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229486472|sp|B2S6Q3|MURC_BRUA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765986|sp|C0RE69|MURC_BRUMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17982501|gb|AAL51761.1| udp-n-acetylmuramate--alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|23348277|gb|AAN30343.1| UDP-N-acetylmuramate--alanine ligase [Brucella suis 1330]
 gi|62196455|gb|AAX74755.1| MurC, UDP-N-acetylmuramate--alanine ligase [Brucella abortus bv. 1
           str. 9-941]
 gi|82616348|emb|CAJ11405.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramate--ala [Brucella
           melitensis biovar Abortus 2308]
 gi|148371644|gb|ABQ61623.1| UDP-N-acetylmuramate--alanine ligase [Brucella ovis ATCC 25840]
 gi|161336189|gb|ABX62494.1| UDP-N-acetylmuramate--alanine ligase [Brucella canis ATCC 23365]
 gi|163674409|gb|ABY38520.1| UDP-N-acetylmuramate--alanine ligase [Brucella suis ATCC 23445]
 gi|189020128|gb|ACD72850.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus S19]
 gi|225617044|gb|EEH14090.1| UDP-N-acetylmuramate--alanine ligase [Brucella ceti str. Cudo]
 gi|225641277|gb|ACO01191.1| UDP-N-acetylmuramate--alanine ligase [Brucella melitensis ATCC
           23457]
 gi|237789128|gb|EEP63339.1| UDP-N-acetylmuramate--alanine ligase [Brucella abortus str. 2308 A]
 gi|256000009|gb|ACU48408.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella microti CCM 4915]
 gi|260095915|gb|EEW79792.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus NCTC 8038]
 gi|260151409|gb|EEW86503.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|260668689|gb|EEX55629.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 4
           str. 292]
 gi|260672629|gb|EEX59450.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675260|gb|EEX62081.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 6
           str. 870]
 gi|260873693|gb|EEX80762.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|260916021|gb|EEX82882.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 3
           str. Tulya]
 gi|260921156|gb|EEX87809.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti B1/94]
 gi|260924282|gb|EEX90850.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M13/05/1]
 gi|261294944|gb|EEX98440.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M644/93/1]
 gi|261297266|gb|EEY00763.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|261304631|gb|EEY08128.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|261738593|gb|EEY26589.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. F5/99]
 gi|261742474|gb|EEY30400.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|261745134|gb|EEY33060.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|262553161|gb|EEZ08995.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M490/95/1]
 gi|262766438|gb|EEZ12227.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|263002271|gb|EEZ14846.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093658|gb|EEZ17663.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 2
           str. 63/9]
 gi|264661271|gb|EEZ31532.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|297175879|gb|EFH35226.1| UDP-N-acetylmuramate-alanine ligase [Brucella abortus bv. 5 str.
           B3196]
 gi|306286588|gb|EFM58165.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO2]
 gi|326409454|gb|ADZ66519.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis M28]
 gi|326539160|gb|ADZ87375.1| UDP-N-acetylmuramate--alanine ligase [Brucella melitensis M5-90]
          Length = 471

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 136/421 (32%), Gaps = 49/421 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IVVS+A    +          + VV        L   R         +A+ GT GK+
Sbjct: 67  AEVIVVSTAIKKNNPELVAAREKLLPVVRRAEMLAELMRFR-------RAVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVAALLD-AGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  +   R+++ G   +                  + +  +        
Sbjct: 218 LDHPEVQALVSRIEDR--RIITYGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NA  A  +   +GI S  +   L     V  RF   G+   G  I+ 
Sbjct: 276 DLRLPMPGLHNVSNATAAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTGSW-NGVEIFD 334

Query: 361 DYAHTSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           DY H    +  +LK  R       GR++ +                    + AD  IV  
Sbjct: 335 DYGHHPVEIRAVLKAAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAP 394

Query: 418 DNPRSEDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAIE-MLNKQDVLVVAGKGHE 470
                E+P       E++  I     +  R     EA+   +  +    D +V  G G+ 
Sbjct: 395 VYTAGEEPIEGVNSEELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGNV 454

Query: 471 T 471
           T
Sbjct: 455 T 455


>gi|306844329|ref|ZP_07476921.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO1]
 gi|306275401|gb|EFM57142.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO1]
          Length = 471

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 136/421 (32%), Gaps = 49/421 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IVVS+A    +          + VV        L   R         +A+ GT GK+
Sbjct: 67  AEVIVVSTAIKKNNPELVAAREKLLPVVRRAEMLAELMRFR-------RAVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVAALLD-AGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  +   R+++ G   +                  + +  +        
Sbjct: 218 LDHPEVQALVSRIEDR--RIITYGSNPQAEVRFINQRMDGAASLFDVVIRSRKGEATEIK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NA  A  +   +GI S  +   L     V  RF   G+   G  I+ 
Sbjct: 276 DLRLPMPGLHNVSNATAAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTGSW-NGVEIFD 334

Query: 361 DYAHTSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           DY H    +  +LK  R       GR++ +                    + AD  IV  
Sbjct: 335 DYGHHPVEIRAVLKAAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAP 394

Query: 418 DNPRSEDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAIE-MLNKQDVLVVAGKGHE 470
                E+P       E++  I     +  R     EA+   +  +    D +V  G G+ 
Sbjct: 395 VYTAGEEPIEGVNSEELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGNV 454

Query: 471 T 471
           T
Sbjct: 455 T 455


>gi|294852756|ref|ZP_06793429.1| UDP-N-acetylmuramate-alanine ligase [Brucella sp. NVSL 07-0026]
 gi|294821345|gb|EFG38344.1| UDP-N-acetylmuramate-alanine ligase [Brucella sp. NVSL 07-0026]
          Length = 471

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 136/421 (32%), Gaps = 49/421 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IVVS+A    +          + VV        L   R         +A+ GT GK+
Sbjct: 67  AEVIVVSTAIKKNNPELVAAREKLLPVVRRAEMLAELMRFR-------RAVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVAALLD-AGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  +   R+++ G   +                  + +  +        
Sbjct: 218 LDHPEVQALVSRIEDR--RIITYGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NA  A  +   +GI S  +   L     V  RF   G+   G  I+ 
Sbjct: 276 DLRLPMPGLHNVSNATAAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTGSW-NGVEIFD 334

Query: 361 DYAHTSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           DY H    +  +LK  R       GR++ +                    + AD  IV  
Sbjct: 335 DYGHHPVEIRAVLKAAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAP 394

Query: 418 DNPRSEDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAIE-MLNKQDVLVVAGKGHE 470
                E+P       E++  I     +  R     EA+   +  +    D +V  G G+ 
Sbjct: 395 VYTAGEEPIEGVNSEELVSRIKTAGHRDARYATGPEALTPLVASIAQAGDFVVCLGAGNV 454

Query: 471 T 471
           T
Sbjct: 455 T 455


>gi|294784927|ref|ZP_06750215.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27]
 gi|294486641|gb|EFG34003.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27]
          Length = 468

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 143/418 (34%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + ++ S+A    +   +   N  I       K   L A  L     E  +A+ GT G
Sbjct: 67  KGVDYVIASTAIKETNPELSYAKNNGI----TLLKRGELLAKLLNR---ETGIAIAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    E +   +  AI
Sbjct: 172 FM---------------NPKYAVITNIDADHLDVHGNLDNI---KKSFIEFISHTQKEAI 213

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    KE + R          S+  +   I  K +     K    + +  +   +F 
Sbjct: 214 ICMDCENLKEAITRLPKGKSVITYSIKDENASIFAKNIRITDRKTIFELYINKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L +  G+    + E L K      R++ +         G  ++
Sbjct: 274 LNIPGEHNIQNSLPVIYLALKFGVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    +++ LK I++I + R++ +F               K A    D  I
Sbjct: 334 KVRIIDDYAHHPTEIKVTLKAIKSIDTSRLVAIFQPHRYSRVHFLLDEFKDAFKDVDKVI 393

Query: 415 VTDDNPRSEDPE-KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I +EI+  H     IE  N  + ++  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEILKEHINHNNIEVMNEWKDVKRYVSRVKKDSTYIFMGAGD 451


>gi|313837456|gb|EFS75170.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA2]
 gi|314929334|gb|EFS93165.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL044PA1]
 gi|314971663|gb|EFT15761.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA3]
 gi|328906998|gb|EGG26764.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium sp. P08]
          Length = 471

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 150/420 (35%), Gaps = 51/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVT 121
           GA  +VVSSA         IR + P LV  +          +  A+ + G+     +++ 
Sbjct: 74  GARTVVVSSA---------IRPDNPELVEAHRLGLRIWHRSAALAALMLGR---EGISIA 121

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++    V  +   +G                 D      SP+      S+L    
Sbjct: 122 GTHGKTTTTGMVATMLDHAGA----------------DPSYVIGSPLAATGKSSHLGGGE 165

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  + S     Q+    +       TN+  DH+D   T QAYF+  + +     P+ 
Sbjct: 166 AFVVEADESDGSFLQYPSQIV-----VITNVEADHLDNWGTPQAYFDGFVSMATR--PEV 218

Query: 242 SPAIIYADDAYSKEVMKRAHNA-GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD 299
              +  ADD  + E+  R  +    RV++ G  +   + L  +         T+      
Sbjct: 219 RYVVTNADDPGAAELACRLESTGTVRVVTYGESEQAEVRLVDLDLNGKAASATLVHGPTQ 278

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG + + NA  A  +   +GI    +L  +        RF+ VG       I+
Sbjct: 279 GRLELQVPGRYNLSNAAAAYCVGSLLGISHRDLLAGIASFTGTLRRFQLVG-RVNDVSIF 337

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTD 417
            DYAH    L   L   R   +G+  V+           R  +G+   AL L D  IV+D
Sbjct: 338 DDYAHHPTELRATLGAARRAVTGQGRVIACFQPHLFSRTRDFVGEFGSALTLVDRVIVSD 397

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             P  EDP      E +   ++          ++ +      E +   D+++  G G  T
Sbjct: 398 IYPAREDPIPGVTGELVHDAVLAAGGDSRYVPDKQDLPEALAEEVRPGDLVITLGAGDVT 457


>gi|212550833|ref|YP_002309150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549071|dbj|BAG83739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 452

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 121/355 (34%), Gaps = 44/355 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++ A+ +  I + +G     +G                          
Sbjct: 110 AKTICITGSNGKTTTATLIYYILKYAGFDVALVGNVG-------------------KSLA 150

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRL 233
             ++ +   +  +E SS  LD   +   K       N+  DH+D Y    Q Y N+KMR+
Sbjct: 151 MQVAEKDCNYYVIELSSFQLD--GMYHFKADIAVLLNITSDHLDCYEYEIQNYINSKMRI 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +     +       D   ++E+ K          S   Q        V A      + +
Sbjct: 209 IQNQTKNDIFIYWSDDLVIAREIQKMKPTVTFYPFSEQKQ------VGVKAYTENGNIKV 262

Query: 294 SVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                 F        L G+  +YN+L A  +   +G+   ++         +  R E V 
Sbjct: 263 ETANGMFSMPQKYLVLRGKHNLYNSLAATAVAKLLGVKDEMLEHSFLNFKAIEHRMEKVA 322

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  I    A   NS   +L+++RT      I++   G D+      I G +     
Sbjct: 323 HIKGVDYINDSKATNVNSCFYVLQSMRT-----PIILILGGVDKGNDYSEIEGLVREKCR 377

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
            +  +  DN +         +   G    I   +   +AI+ A ++  + D +++
Sbjct: 378 ALIFLGVDNSK-------LHDFFDGKVNVIYDVDSMKKAIQYAYKIAQEGDTVLL 425


>gi|160915597|ref|ZP_02077808.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
 gi|158432717|gb|EDP11006.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
          Length = 440

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 168/435 (38%), Gaps = 50/435 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILA 119
               QG    ++ + Y+    +  I+   PI+   V++     +         +     A
Sbjct: 48  AVFDQGHPECLLHTDYAFVVKNPGIKYTVPIVRYFVEHEIAIYTEIEIAYRYANGFRYGA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GK+++ + + ++ ++ G +         I               Y    L+    
Sbjct: 108 ITGTNGKTTITTMLYEMLKKKGQAI----VAGNIG--------------YPLSELALRYE 149

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  V++E S+  L    ++          NL  DH+DY  + ++Y+ +KMR++E    
Sbjct: 150 DEVKDVALELSNFQLL--GIEQFAPTVSVVCNLAPDHLDYMPSVESYYASKMRIYENC-K 206

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +++  +   DD     VM+ A N  C+V+      K   L +       + V +  E   
Sbjct: 207 EDAWFLRNLDDP---IVMEYAKNIPCKVIDFSLTRKNCPLHRANGKVYFEDVVLFEE--- 260

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G++ + NA++AA +   +G+    +   + +   V  R E++G   RG + Y
Sbjct: 261 --KSLALKGDYNLSNAMIAACMAYRLGVSCEDIQTVIAQFQPVEHRMEYIGEK-RGVKFY 317

Query: 360 VDYAHTSN-SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            D   T+  ++E  L         + I++   G D+    + +          IA     
Sbjct: 318 NDSKATNTHAVEAAL-----HCFDKNIILLAGGHDKGISFQELSAYDKRIKLCIAF---- 368

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
                   + + + ++       +     A+ TAIE  ++ DV++++     +     N 
Sbjct: 369 -------GETKDQFVNVFSHVETRETMQAALTTAIEKASEGDVILLSPACS-SYDQFPNY 420

Query: 479 EKKMSVDCDIIREIL 493
           E +  +  ++++  L
Sbjct: 421 EVRGKLFKEMVQAYL 435


>gi|300112944|ref|YP_003759519.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
 gi|299538881|gb|ADJ27198.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
          Length = 477

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 154/432 (35%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q I  G + +VVSSA    +          I VV    + L+      YG    
Sbjct: 68  GHD--SQHIE-GCDVVVVSSAIDENNPEVRAARGRLIPVVPRA-EMLAELMRFRYG---- 119

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  I   +      + PT  I         +  +   L K   
Sbjct: 120 --IAVAGTHGKTTTTSLIAGILGEA-----NLDPTFVIGG----QVNSIGANSRLGKGEY 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++    +  S               ++ +    TN+  DH+D +        A    F 
Sbjct: 169 LVAEADESDASFL------------LLQPLLAVITNVDADHMDAYGGDFIALKAAFLEFL 216

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++    + G  VL+ G  +     L+ +  I  + Q  ++
Sbjct: 217 HHLPFYGLAVVCLDDPVLRELL---PDIGRPVLTYGTCKEADYQLQALKQIRARTQFQVA 273

Query: 295 VEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
             GKD     +  LPG     NAL A  +   +G+  + +   L+    +  RF+    +
Sbjct: 274 RPGKDNWLTVVLNLPGAHNALNALAAIAVAHELGVADSAIQRFLKGFSGIGRRFQCYGEI 333

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T +    +  DY H    L   L+ IR      R++V+F                  L 
Sbjct: 334 ATPAGKVLLVDDYGHHPRELAATLEAIRVGWPERRLVVIFQPHRYTRTRDLFEAFIQVLS 393

Query: 409 LADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLN 457
             D+  + +  P  E P          + I+A    G    I   +  E I    +++L 
Sbjct: 394 QVDVLFLLEVYPAGEVPIGGADSRALWQAIQA---RGQVRPILVED-KEIIEEMLLDLLR 449

Query: 458 KQDVLVVAGKGH 469
           + D+L+  G G 
Sbjct: 450 EGDLLLTVGAGD 461


>gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
          Length = 445

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 167/418 (39%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A++ G + + +S   S +             V+ +      L A
Sbjct: 47  GKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQNGGRVLGDIE----LLA 102

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
             +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 103 DIVNHR-GDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ ADDA+ + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKDKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGTLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGDEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|319941790|ref|ZP_08016112.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
 gi|319804723|gb|EFW01590.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
          Length = 465

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 141/423 (33%), Gaps = 53/423 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+A++VSSA    +   T      I VV      L+       G      +A+ G  G
Sbjct: 63  RGADAVIVSSAVKADNPEVTAARELDIPVVPRAVM-LAELMRLRRG------IAIAGAHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    +    GL    +     ++S   + RL T         ++       + +
Sbjct: 116 KTTTTSLTASLLAAGGLDPTFV-IGGKLNSAGANARLGTGE-----FLVAEADESDASFL 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +               +  +  + TN+  DH+D +        +    F   LP    A+
Sbjct: 170 N---------------LTPVIAAVTNIDEDHMDTYGHDFEKLKSAFVDFLGRLPFYGVAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT-ISVEGKDFDFL 303
           +  DD   + +  R       V+  G           V A   + + T +  +      +
Sbjct: 215 LCMDDDNVRSIRPRVTKP---VIGYGLSHDATVRAIDVTADGTRMRFTVLRPDHPPLPVV 271

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRI-- 358
             LPG   V NAL A  +    G+    +   L +   V  RF     +      GRI  
Sbjct: 272 LNLPGVHNVRNALAAVAIATLAGVKDEDIKRGLAEFKGVGRRFAQWGDIPIQDADGRITG 331

Query: 359 ----YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIA 413
                 DY H  + +   L  +R    GR IVV        + +      +  L+  D  
Sbjct: 332 TFTLIDDYGHHPHEMAATLAAVRGAWPGRRIVVAFQPHRYTRTRDCFNDFVKVLEDVDGV 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI--------EMLNKQDVLVVA 465
           ++ +  P  E P  I     H +   I+   R E +   +         ++   DV+V  
Sbjct: 392 VLANVYPAGEAP--IPGADSHHLAEAIKASGRSEPVVVDVDQVPDAVRSLVEPGDVVVTM 449

Query: 466 GKG 468
           G G
Sbjct: 450 GAG 452


>gi|119773496|ref|YP_926236.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella amazonensis
           SB2B]
 gi|166224726|sp|A1S2G0|MURC_SHEAM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119765996|gb|ABL98566.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella amazonensis
           SB2B]
          Length = 484

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 150/449 (33%), Gaps = 59/449 (13%)

Query: 51  GNKEDGHLFIPQAI-----AQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRK 100
           G +  G      A+     + GA   +   A ++           I+ + P +     ++
Sbjct: 44  GYQVSGSDIADNAVTERLGSLGARIFIGHGADNVSGVDVVVVSTAIKHDNPEIAAAKEKR 103

Query: 101 F-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
                   + A  +  +H    +AV GT GK++  S +  I  ++        PT  I  
Sbjct: 104 IPIVRRAEMLAELMRYRHG---VAVAGTHGKTTTTSLIASIYGQAERD-----PTFVIGG 155

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                             ++       + +                ++ +    TN+  D
Sbjct: 156 LLNSAGTNARLGSSRY-LIAEADESDASFL---------------HLQPMVTVVTNIEAD 199

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+D +        +    F   LP    A++  DD   +E++ R      +V++ G+   
Sbjct: 200 HMDTYGGDFEKLKSTFVDFMHNLPFYGVAVVCVDDPVVRELIPRIGR---QVVTYGFSDD 256

Query: 276 -FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             +         +  + T+  +GK D      LPG+  V N+L A  +     I+   ++
Sbjct: 257 ADVQALNFVQEGHSCRFTVRRKGKDDLSLKVNLPGQHNVLNSLAAIAVATEDDIEDEAIV 316

Query: 334 EHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG 389
           + L +   +  RF+ +G   T +    +  DY H  + +   +K  R      R+++ + 
Sbjct: 317 KALAEFQGIGRRFQHLGKFATPNGEVMLVDDYGHHPSEVLATIKAARAGWPDKRLVMAYQ 376

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
                            L   D  ++ +     E P  I       +   I +  ++E I
Sbjct: 377 PHRYTRTRDLYEDFVEVLSQVDKLVLLEVYAAGETP--IPGADGRALCRSIRQRGQLEPI 434

Query: 450 RTAI---------EMLNKQDVLVVAGKGH 469
             A          ++L   D+L+  G G+
Sbjct: 435 FVASPEQLTSVLPDVLADGDLLLCQGAGN 463


>gi|56707396|ref|YP_169292.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669867|ref|YP_666424.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456471|ref|ZP_03664944.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370904|ref|ZP_04986909.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874234|ref|ZP_05246944.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|68565692|sp|Q5NI50|MURC_FRATT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123169630|sp|Q14JK2|MURC_FRAT1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56603888|emb|CAG44872.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320200|emb|CAL08255.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569147|gb|EDN34801.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840233|gb|EET18669.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158535|gb|ADA77926.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 451

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 128/362 (35%), Gaps = 32/362 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT GK++ +S +  +  +    S  I     +                +  A S +
Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFI-----VGGV-------------VKYADSNI 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EA            +       TN+  DH+    T    +   +  F + 
Sbjct: 148 QVNGTDKLVIEADESDAS---FLFLSPQVVIITNIDLDHM---ATYNNSYQTLLENFTDF 201

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + KES   IY   DD   ++++ + + +   V S G+     + +     I       I 
Sbjct: 202 VSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIR 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN 352
            +  D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      +
Sbjct: 262 YKDDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVIS 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                +  DY H    +   +  +R    + +II VF                 AL LAD
Sbjct: 322 GHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPKALSLAD 381

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+       E         +I+ G+ G++       AI    ++ N+  V+++ G G 
Sbjct: 382 QLILLPTYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILIQGAGD 441

Query: 470 ET 471
            T
Sbjct: 442 VT 443


>gi|299144101|ref|ZP_07037181.1| UDP-N-acetylmuramate--alanine ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518586|gb|EFI42325.1| UDP-N-acetylmuramate--alanine ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 465

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/411 (15%), Positives = 122/411 (29%), Gaps = 37/411 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + +V + A ++++          I ++D    FL            +  +A++GT G
Sbjct: 73  RGVDLVVYTDAINIENEELKAAIKLKIDIIDRA-SFLGALMKNY-----DTSIAISGTHG 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V +I +    +       + +     D+             L+         +
Sbjct: 127 KTTTTSMVTEIIKNLNSN------PTILLGGQLDDINGNVKIGDKKLFLTEACEYKANVL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                    N+  DH+DY    +       + F   L      I
Sbjct: 181 KYF---------------PTTAVVLNIDEDHLDYFDNIEHIIKT-FKGFVNNLNSNDKLI 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLF 304
           +  DD  SK ++           S      +       ++       +    K   +   
Sbjct: 225 LNLDDENSKMLLND-KKENVITFSTKSPANYNAKNITYSLDGYPSYDLYYNEKFIGNVEL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   V N+L A    +  G+     +  ++    V  R E+ G       I  DYAH
Sbjct: 284 SIMGNHNVSNSLAAIAASVENGVSFKDAINGIKIYKGVHRRLEYKG-KYNDAIIEDDYAH 342

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
               ++  L  ++    G +  +F                 + + AD+ I+TD     E 
Sbjct: 343 HPTEIKASLNALKNSCKGSLYCIFQPHTFTRTKLLLDSFSKSFNNADVVIITDIYAAREK 402

Query: 424 DPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D   I        I           N  +      + L + D+ V  G G 
Sbjct: 403 DYGDIHSKTLCDAINSNGGNAFYLKNFSDVCEYLKKNLKENDMAVTMGAGD 453


>gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
 gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
          Length = 445

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 164/420 (39%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGCVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   + L  +G       +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 148 ----PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F      +   ++ ADDA+ + + +       +  S+ ++  F   ++   
Sbjct: 202 DYAHTKAKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGC 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P 
Sbjct: 256 LKQGDEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   
Sbjct: 310 RVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 365 LKDKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYTQAEAGDIVLL 418


>gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
 gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
          Length = 445

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 165/420 (39%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +  +          V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPNIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   + L  +G       +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 148 ----PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F      +   ++ +DD + + + +       +  S+ ++  F   ++   
Sbjct: 202 DYAHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGR 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P 
Sbjct: 256 LKQGNEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   
Sbjct: 310 RVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A     + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 365 LAGKAKGVFLIGVDAP------QIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|332829615|gb|EGK02261.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 444

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 132/393 (33%), Gaps = 46/393 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAKRYT---TAKMICITGSNGKTTTTSLIYHILKSAGLNVGLGGNIG------------ 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++ +   +  +E SS  L+   +   K       N+  DH+D +   
Sbjct: 139 -------RSFARQVAEENYDYYVLELSSFQLEN--MYSFKADIAILLNITPDHLDRYDHD 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AKMR+ +     ++      D   SKE+ K                    +   
Sbjct: 190 IQKYIDAKMRIVQNQTEADAFIFWEEDPIVSKEIKKLVSKGKQYTF------AEHKVGNA 243

Query: 283 CAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A  N  ++ I+     F     L  L G   +YN+L +      + I    +   L   
Sbjct: 244 IAYLNDHEIDINTPNSAFIMEQDLLALEGTHNLYNSLASGIAAKLLDITDDNLRHSLSDF 303

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V        I    A   NS    L++++T      +V+   G D+     
Sbjct: 304 QGVEHRLEKVAKVKGIQFINDSKATNVNSCWYALQSMKT-----KVVLILGGTDKGNDYT 358

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            I   +      +  +  DN       K+       +    +  +  EA+  +  +  + 
Sbjct: 359 EIEQLVKDKARALVFLGVDN------SKLHKFFDGKVKNIADASSMKEAVEKSYALAEEG 412

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D ++++     +  +  N E +     + +R++
Sbjct: 413 DTVLLS-PCCASFDLFKNYEDRGDQFKEYVRKL 444


>gi|269795573|ref|YP_003315028.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
 gi|269097758|gb|ACZ22194.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
          Length = 499

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 87/422 (20%), Positives = 153/422 (36%), Gaps = 43/422 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVSSA   +D    + + +  L V +  + L++  S          +AV G  G
Sbjct: 72  AGAQTLVVSSAVR-EDNPELVAARSAGLRVLHRSQALAILMSG------SRAVAVAGAHG 124

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ ++    + +  GL        S I+         + +   L      ++    +  
Sbjct: 125 KTTTSAMTAVVLREVGLDPSFAIGGSVITETGAVPGGHSGTGDVL------VAEADESDG 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S  A             +      TN+  DH+D++ T+ A+  A +  F   +      +
Sbjct: 179 SFLAY------------RPTVAVVTNVEPDHLDHYGTRAAFEEAFVE-FAGNIVPGGTLV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTISVEGKD---- 299
             ADDA + E+ +R   AG  V++ G       L               +++ G D    
Sbjct: 226 ACADDAGAAELARRHAAAGGEVVTYGTAPGATALLSGYRVETDGTSAFELTLPGADAASA 285

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                    PG     NA  A    + +G+D A  +  +        R+E  GT   G  
Sbjct: 286 DGLTVRLRAPGLHNALNASAALLAAVRLGVDPAAAVAAVWAFRGTGRRYESRGTVG-GVE 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DYAH    +  +L+  R +   G + V+F                 ALDLAD  +V 
Sbjct: 345 VVDDYAHHPTEVAALLRAARALVGTGSLRVLFQPHLFSRTRIFAQEFAEALDLADDVVVC 404

Query: 417 DDNPRSEDPE-----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           D     EDP+      +  + + G    +   +R+EA  +        D+++  G G  T
Sbjct: 405 DVYAAREDPDPEVGPHLLVDRMTGRGRVV--ADRVEAATSLAGSAEPGDLVLTVGAGDVT 462

Query: 472 VH 473
             
Sbjct: 463 EM 464


>gi|114566361|ref|YP_753515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337296|gb|ABI68144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 453

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 132/402 (32%), Gaps = 57/402 (14%)

Query: 71  IVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKS 127
           +VVS    L+            P++                  K      LA++GT+GK+
Sbjct: 72  LVVSPGVPLETAPIRQAREQGIPVI---------GEVELAYILKPKAVEFLAISGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I  ++G ++   G                P    L           ++  ++
Sbjct: 123 TTTSLLHYILAQAGRNALAGGNIG------------IPLTTLLDS---------ISAGTI 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                          +       N+  DH++ H+T + Y  AK ++F +  P +     Y
Sbjct: 162 VVELSSFQLESSSSFRPYICGLLNITPDHLNRHKTMERYIEAKAKIFAQQKPGDYAVFNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----L 303
            D      + + A +   +      + + +      A  N   +TI   G   +      
Sbjct: 222 EDS----ILREMARSCPAQTFFFSSERELME----GAFINNGVITIKRAGIIQEIARIDE 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + N L A  +    G+    + + L     V  R E +G       +    A
Sbjct: 274 VSLRGKHNLENILAATMMASLAGVSPEDIRQALASFPGVRHRMEELGLYDDVLYVNDSKA 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++   L +       + I++   G ++      + G I   + ++ ++       E
Sbjct: 334 TNPEAVMKALDSF-----NQPIILIAGGRNKGSSFSQLAGLIKQKVRELVLL------GE 382

Query: 424 DPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E+I+   I  G     E  +   A+  A E+  K +V+++
Sbjct: 383 AREEIKDAVIDAGFRNIHEVEDLQAAVIKAHELARKGEVVLL 424


>gi|41407994|ref|NP_960830.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|48428301|sp|P61681|MURC_MYCPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|41396348|gb|AAS04213.1| MurC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 496

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 102/299 (34%), Gaps = 39/299 (13%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ +  AY  A    F E L      ++  DD  +  + +R    
Sbjct: 183 PDVAVVTNIETDHLDFYGSADAYV-AVFDAFVERLAPGGALVVCVDDPGAAALARRTAEL 241

Query: 264 GCRVLSVGY----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFD---FLFPLPGEFQ 311
           G RVL  G     Q           +  +QQ T     I + G+          +PG   
Sbjct: 242 GIRVLRYGSGSHGQAPSGQPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHM 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-----RIYVDYAHTS 366
             NA+ A    I IG  +  VL+ L     V  RFE VGT          R++ DYAH  
Sbjct: 302 ALNAMGALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTAGGPAPSSTVRVFDDYAHHP 361

Query: 367 NSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             +   L  +RT+      GR I VF                 ALD AD   V D     
Sbjct: 362 TEIAATLAAVRTLLEQSGGGRSIAVFQPHLYSRTKAFAEEFGRALDAADEVFVLDVYGAR 421

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHET 471
           E P       + G+ G     +    +R                   DV+V  G G  T
Sbjct: 422 EQP-------LAGVSGASVAEHVSVPVRYLPDFSAAAEQVAAAAAPGDVIVTMGAGDVT 473


>gi|294056592|ref|YP_003550250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615925|gb|ADE56080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 457

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 126/379 (33%), Gaps = 43/379 (11%)

Query: 10  DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           D  +L +  +   +   E + I     D+R +Q+G  F+A+     DGH F+ QA+A GA
Sbjct: 5   DPSQLADWTNGHWLGAHEPEAIRAFCFDTRQLQSGDCFIALTAGARDGHDFVEQALAAGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            + +VS    L           P LVV++T   +    + +       ++ VTG+ GK+S
Sbjct: 65  GSALVSRPLDLP---------IPQLVVEDTLLAMEAIGAAVRAAFSGPVVGVTGSCGKTS 115

Query: 129 VASFVQQIC------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
               ++ +         +G  + +IG   T+     +                    Q  
Sbjct: 116 TKEMLRLVLGESVAHATAGNWNNRIGVPMTLFGLDSE-------------------RQEF 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +    +  G   H  + I       T +   H++  QT +   N K +L     P  S
Sbjct: 157 AVIEAGINQPGEMNHLGEMIAADVVVVTAIEAAHLELLQTVETIANEKSQLMAHARP--S 214

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-----G 297
             +I   +  +     R       V+  G       L  V       ++ +S E     G
Sbjct: 215 ALLILPAELLNYAAFNRYRARAVAVVEAGSPVPEGVLSTVSYRFEGPRIVLSGEYFAAVG 274

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +F           NA +A      +G  + +    +E       R   + +  R   
Sbjct: 275 GRCEFQLASQSRGIRRNAALAMVTAAVLGQPTKVSRVGIENWQPSGDRGRLIESAGRQFY 334

Query: 358 IYVDYAHTSNSLEMILKNI 376
           +   Y     S+   L   
Sbjct: 335 V-DCYNANPASMADALDAF 352


>gi|224541556|ref|ZP_03682095.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525523|gb|EEF94628.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
          Length = 446

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AVTGT+GK++  + + +I + +G  +   G                  P       
Sbjct: 108 QHYIAVTGTNGKTTTVTLIYEILKAAGRKAHICGNYGI--------------PYCEVVLN 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            +L  +    + VE S+  L    ++  K    +  NL  DH+DY  +   Y+ +KMR++
Sbjct: 154 EHLYEEEGHDIVVEMSNFQLID--IEEFKPEVATVLNLTPDHLDYMDSLDEYYASKMRIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                K+   I  +DD   +  + +      R+ +   +G+     K  AI+ K Q  I 
Sbjct: 212 MNQDEKD-LFINNSDDETLQSYLAKYP-VPSRIETFSVKGQGDVELKDNAIYYKGQKVID 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G   V N +VA   C ++G+    + + L     V  R EFV     
Sbjct: 270 RD------EIKIVGLHNVANMMVAIAACASVGVSLDSIHDTLAAFKGVEHRIEFV--REL 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G  Y + +  +N+   ++     I +    V+   GG         +        +  I
Sbjct: 322 DGVRYYNDSKGTNTDAAVIA----IKAFEKPVILLMGGHEKNLDLKDV-----REQNPLI 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            T      E  E+   ++ H  P  I   +  +AI  A E+  + DV+++
Sbjct: 373 KTLIC-FGETKERFSKDMAH--PHTIVVDHMKDAILKAKEIAKEGDVVLL 419


>gi|260566065|ref|ZP_05836535.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 4 str. 40]
 gi|260155583|gb|EEW90663.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 4 str. 40]
          Length = 471

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 136/421 (32%), Gaps = 49/421 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IVVS+A    +          + VV        L   R         +A+ GT GK+
Sbjct: 67  AEVIVVSTAIKKNNPELVAAREKLLPVVRRAEMLAELMRFR-------RAVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVAALLD-AGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  +   R+++ G   +                  + +  +        
Sbjct: 218 LDHPEMQALVSRIEDR--RIITYGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NA  A  +   +GI S  +   L     V  RF   G+   G  I+ 
Sbjct: 276 DLRLPMPGLHNVSNATAAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTGSW-NGVEIFD 334

Query: 361 DYAHTSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           DY H    +  +LK  R       GR++ +                    + AD  IV  
Sbjct: 335 DYGHHPVEIRAVLKAAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAP 394

Query: 418 DNPRSEDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAIE-MLNKQDVLVVAGKGHE 470
                E+P       E++  I     +  R     EA+   +  +    D +V  G G+ 
Sbjct: 395 VYTAGEEPIEGVNSEELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGNV 454

Query: 471 T 471
           T
Sbjct: 455 T 455


>gi|237785344|ref|YP_002906049.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758256|gb|ACR17506.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 537

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 149/481 (30%), Gaps = 99/481 (20%)

Query: 68  AEAIVVSSAYSLQDFS-------------ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           A   V+++ +  ++               A I  + P LV    R    +  S + G   
Sbjct: 81  AAGAVIATEHKAENLDLAGDTPTCVVTSFAAIPQDNPELVSARERGIPVVTRSDVLGALL 140

Query: 115 ENILA--VTGTSGKSSVASFVQQICQRSGLS--SFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +  A  + GT GK+S  S      Q++G+       G  ST  + A     +       
Sbjct: 141 LDHDALLIAGTHGKTSTTSLAVIALQQAGMDPSFAVGGQLSTTGTNAHHGTGSVFVAEAD 200

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S L+                               TN+  DH+D++ ++Q+Y +  
Sbjct: 201 ESDASLLTY-----------------------SPNVAVVTNIEADHLDFYGSEQSYVHVF 237

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              F + +      ++  DD ++  + +R         V+  G          +      
Sbjct: 238 DE-FADRIVDGGYLVVCVDDPHAAALAERIVQQGNRINVIGYGTSDACTRHPSIPVGAEI 296

Query: 289 QQVTISVEGKD---------------------------FDFLFPLPGEFQVYNALVAAGL 321
            ++T   +  D                                 +PG+  V NA+ A   
Sbjct: 297 TEITPKPDRTDALIRISLPAHASANNSAGEANEAETSTHRVEMHIPGKHMVLNAVAAIVS 356

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR----GGRIYVDYAHTSNSLEMILKNIR 377
            + +G D    +  +     V  RFE  GT S     G  +Y DYAH    +  +L   R
Sbjct: 357 SVLVGADRERAVSGVNGFQGVRRRFESHGTISHVYYEGASVYDDYAHHPTEVRAVLTAAR 416

Query: 378 ---------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PE 426
                         R+IVVF         +       AL LAD AIV D     E   P 
Sbjct: 417 EKIQAMDPVEGHQRRVIVVFQPHMYSRTEEFASEFAEALSLADEAIVMDIYGAREKPIPG 476

Query: 427 KIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG-------------HETV 472
                II  +       +R++ + R    +    D+++  G G             HE V
Sbjct: 477 VTSDLIIDQMTISAHAAHRVDEVPRMVSSIAGPGDIILTMGAGTVTMLADPIVAALHEPV 536

Query: 473 H 473
            
Sbjct: 537 Q 537


>gi|229815105|ref|ZP_04445442.1| hypothetical protein COLINT_02147 [Collinsella intestinalis DSM
           13280]
 gi|229809335|gb|EEP45100.1| hypothetical protein COLINT_02147 [Collinsella intestinalis DSM
           13280]
          Length = 474

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 129/415 (31%), Gaps = 51/415 (12%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +VVS+A      +         P+         L          +    +A  GT GK+
Sbjct: 79  VVVVSTAIPETNPELVRARELGIPVWHRAKMLSALG---------YGRTTVACAGTHGKT 129

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +S V  +  R     SF IG    +  +  + +                      +  
Sbjct: 130 TTSSMVATMLDRMELDPSFLIG--GVVEGYGTNGKNGDGE-----------------YFV 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA         LD         TN+  DH+D++ + +         F  L+ ++   I+
Sbjct: 171 VEADESDSSFLYLD---PHVVIVTNIEADHMDHYDSLEQIEET-FCTFMGLVGEDGTVIV 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             +D     +++ A + G  V + G                      T+++       + 
Sbjct: 227 CGEDP---RLVELARSCGRTVFTYGEGDGMDVCLNPAATRHAFGSDFTVTLPDGSKREVS 283

Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
               PG   + NA  A      +G+++    E L        RF  VG   RG  +  DY
Sbjct: 284 IKNNPGRHNMLNATAALTAAYVLGLNTERAAEALSTFEGARRRFTQVG-EVRGVTLVDDY 342

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +   L   +++    + VVF                 A   AD  I+ D  P  
Sbjct: 343 GHHPTEVRATLAAAKSLDFQHVDVVFQPHRYSRLQALCDDFVDAFADADTVILVDVFPAG 402

Query: 423 EDP------EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P      + +  +I    PG       +    +    ++    D+L+  G G 
Sbjct: 403 EMPIPGVTSKMLADKIRAAHPGKSVYYVSDHAALMARIDDVAQAGDLLITMGAGD 457


>gi|293375435|ref|ZP_06621716.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325844415|ref|ZP_08168142.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
 gi|292645988|gb|EFF64017.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325489089|gb|EGC91473.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
          Length = 543

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 123/356 (34%), Gaps = 25/356 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +++ VTG+ GK+S    +  I         Q     T  S+     +T     +L    S
Sbjct: 196 DVIGVTGSYGKTSTKHALNAILSE------QFNTLMTPESYNTPMGITITIRNFLKPIHS 249

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              ++      + A   G      +      G  T++G  H++  +T       K  L E
Sbjct: 250 KFIAE------MGAYKVGEINELCEIAYPKYGVLTSVGPQHLETFKTIDNVKQTKFELIE 303

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
            L P++    I  DD   ++  +      C+V + G +         +          + 
Sbjct: 304 YL-PEDGIGFINIDDENIRDYYENKFQGKCKVYTYGIEREADYRASDIEVSEKGTTFNVH 362

Query: 295 V-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G+   F   L G   +YN L + GL   +GI    +   + K+  V  R E      
Sbjct: 363 FKDGRVETFQTKLLGLHNIYNTLASIGLGYELGIPVEKMQMAVRKMKPVTHRLEL---RR 419

Query: 354 RGGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVVFGCGGDRDQGKRPI---MGKIALD 408
            G    +D A  SN +  +M L+ +  + +G+ IV+     D    +  +    G    D
Sbjct: 420 NGNFTIIDDAFNSNPVGSKMALEVLGQM-NGKRIVITPGMVDLGTAQYDLNKAFGTYMKD 478

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             D  I+      +E       E+ +         N  +A     E++     +++
Sbjct: 479 NCDYVILVGKKQ-TEPIYAGLMEVEYPTETIYVAENLQDAFAKMHEVVEPGAFVLL 533


>gi|317489849|ref|ZP_07948343.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911047|gb|EFV32662.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 269

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 93/244 (38%), Gaps = 13/244 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR  + G ++VA+ G + DGH F+  A++ GA   +V                 
Sbjct: 28  TGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLAAELGA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V +T   ++  A          ++A+TG++GK++  + V+ +   +  +    G  
Sbjct: 88  SVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVATAGNQ 147

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +      +               L+         V +     G      D ++   G   
Sbjct: 148 NNELGVPKT-------------LLAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVV 194

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   +++    AK  L   L      A + ADD Y+  V + A     RV +V
Sbjct: 195 NVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETV 254

Query: 271 GYQG 274
            + G
Sbjct: 255 LFDG 258


>gi|315125604|ref|YP_004067607.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
 gi|315014117|gb|ADT67455.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
          Length = 469

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 140/422 (33%), Gaps = 44/422 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +          I VV    + L+      +G      +A+ GT GK+
Sbjct: 64  ANVVVVSSAIDKTNPEIQAAQAARIPVVRRA-EMLAELMRFRHG------IAIAGTHGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I  ++GL    I     ++S   + ++           ++       + +  
Sbjct: 117 TTTSLIASIYAQAGLDPTFI-IGGLLNSAGSNAKVGKSD-----FLIAEADESDASFL-- 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH++ +             F   LP    A++ 
Sbjct: 169 -------------HLQPMVSVITNIEEDHMETYGGSLEKMKDTYVEFIHNLPFYGLAVVC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFP 305
            D   + E++ R       V++ G        +       N  Q T++  +G+       
Sbjct: 216 IDSDVAAELIPRFGRP---VITYGESHEADYRMSDFSQTANTCQFTVTNKQGESLTAKLN 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRG-GRIYVDY 362
           +PG+    NA  A  +     I +  +L  L+    +  RF+  G   N RG   +  DY
Sbjct: 273 MPGKHNALNATAAIAVAKDQNIANHAILAALDTFEGIGRRFQHYGEFENERGSVMLVDDY 332

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H  + +   +   R      R+++V+                  L   D  ++ D    
Sbjct: 333 GHHPSEVAATITAAREGWPDKRLVMVYQPHRYTRTRDLYEDFVKVLADVDQLLLLDVYSA 392

Query: 422 SEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            E+P      + +   +       +   +  E        L   D+++  G G+    +V
Sbjct: 393 GEEPIVGADSKSLCRSLRQRGKEPLHVASSSELAGVLANCLQNNDLVLTQGAGN-IGQLV 451

Query: 476 TN 477
            N
Sbjct: 452 KN 453


>gi|229490346|ref|ZP_04384187.1| UDP-N-acetylmuramate--alanine ligase [Rhodococcus erythropolis
           SK121]
 gi|229322636|gb|EEN88416.1| UDP-N-acetylmuramate--alanine ligase [Rhodococcus erythropolis
           SK121]
          Length = 502

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 154/467 (32%), Gaps = 82/467 (17%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH     A+     G   +V + A   +D    + +     P+++        ++ AS +
Sbjct: 59  GHD--ADALDLLPGGPTVVVTTHAAIPKDNPELVEAARRGIPVIL------RPAVLASLM 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPI 168
            G        V+GT GK+S  S +    Q  G    F +G     +     +        
Sbjct: 111 QGN---RTFLVSGTHGKTSTTSMLVVALQHCGFDPSFAVGGELNEAGTNAHHGSG----- 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                        V     + S   L Q+            TN+  DH+DY  + +AY  
Sbjct: 163 ------------DVFVAEADESDGSLLQY-----DPNVIVVTNIEADHLDYFGSVEAYVK 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFI-------- 277
                F + L      I   DD  S ++ KR      +  RVL  G              
Sbjct: 206 V-FDDFVDKLRPGGLLIACLDDPGSADLAKRIVVSGRSDIRVLGYGSADAQEVEAGTAFE 264

Query: 278 ---------HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     L    A      +   + G+         +PG     NAL A       G
Sbjct: 265 PVDGVEVGVRLLGFHAHDVGGVLQFHLAGESAARTVRMAVPGRHMALNALAALLAARDAG 324

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI------- 379
            ++  ++E L     V  RF+F G   RG R++ DYAH    +  +L     +       
Sbjct: 325 AETEEIVEGLAGFGGVHRRFQFTG-RERGVRVFDDYAHHPTEVRAVLGAAADLVRPEDDS 383

Query: 380 -----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR--AEI 432
                 +GR+IVVF                 ALDLAD  +V D     E+P      A +
Sbjct: 384 SSTNSAAGRVIVVFQPHLYSRTAAFAEEFAQALDLADEVVVLDVYGAREEPMPGVSGALV 443

Query: 433 IHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETV---HIV 475
              +   +  + +  +A +    + +  D+++  G G  T+    I+
Sbjct: 444 AQSVTKPVHYQPDLSQAPKQVAALAHPGDIVITMGAGDVTMLGKQIL 490


>gi|170755898|ref|YP_001779747.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra]
 gi|169121110|gb|ACA44946.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra]
          Length = 873

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 139/373 (37%), Gaps = 27/373 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     +G T+T   +  +  +          A + L+++ V    +E + 
Sbjct: 494 LIAHILSFSGKK---VGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +     K  L  E + K+   +I AD
Sbjct: 551 GGLIRDGLPYDLADVGIITNVTEDHLGLGGINTLEDMAYVKA-LVGEAVKKDGYVVINAD 609

Query: 250 DAYSKEVMKRA--------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGK 298
           D  S  ++ R          N    ++S     K + L         +++      +   
Sbjct: 610 DEASISIINRIKSKIILFTKNKNNPIISQHLDNKNLVLYLDEDTIYLKKLNKNEEIINVN 669

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGR 357
                      + V NA+ A    IA+G+D   + + LE           F   N  G  
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMYNVHGTN 729

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   + +
Sbjct: 730 VILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYVYIKE 789

Query: 418 D-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D + R     +I   +  GI              +  EA++ AIE  N  D++++  +  
Sbjct: 790 DRDKRGRKHGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIMFFEEF 849

Query: 470 ET-VHIVTNGEKK 481
           E   +IV +  KK
Sbjct: 850 EPSENIVKDKIKK 862


>gi|224536612|ref|ZP_03677151.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521703|gb|EEF90808.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 444

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 71/384 (18%), Positives = 139/384 (36%), Gaps = 37/384 (9%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ PI++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPIILKLKKQGTPVISEIEFAGRYTNAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+    G                      + AL   + Q   +  +E SS  LD   +  
Sbjct: 129 LNVGLAGNIGK------------------SLALQVATDQH-DYYVIELSSFQLDN--MYK 167

Query: 202 IKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D Y+   Q Y +AK R+ +   P+++      D    +E+ K  
Sbjct: 168 FRANIAVLMNITPDHLDRYNHCMQNYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     S   +   I   +   +   + +  ++E +       L G   +YN+L A  
Sbjct: 228 LCAHLYPFSAMKEDGAIAYVEDGEVEINEPIAFNMEQE----KLALQGTHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI+   +   L     V  R E V T      I    A   NS    L++++T  
Sbjct: 284 SANLAGIEKEYIRRALSDFKGVEHRLEKVATVRGVEFINDSKATNVNSCWYALQSMKT-- 341

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
                V+   G D+      I   +    + +  +   N   E        +  G+P   
Sbjct: 342 ---KTVLILGGKDKGNDYTEIEDLVREKCSALVYLGLHN---EKLHDFFDRM--GLPVAD 393

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            +    +A+  A  +  K + +++
Sbjct: 394 VQTGMKDAVDAAFRLAKKGETVLL 417


>gi|258620877|ref|ZP_05715911.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
 gi|258625122|ref|ZP_05720039.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258582573|gb|EEW07405.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258586265|gb|EEW10980.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
          Length = 486

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 143/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +     ++   S       I    P +     ++        + A  +  +H
Sbjct: 64  AEKGATIFIGHEEQNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 124 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 175 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + + T
Sbjct: 220 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFAEDADVRIENYRQQGQQGKFT 276

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 277 VVRKGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILRAMANTQGTGRRFDHLGE 336

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 337 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 397 EQVDVLIMLDVYSAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 454

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 455 GDLVLTQGAGD 465


>gi|89895655|ref|YP_519142.1| hypothetical protein DSY2909 [Desulfitobacterium hafniense Y51]
 gi|122063244|sp|Q24TE4|MURD_DESHY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89335103|dbj|BAE84698.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 454

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 144/426 (33%), Gaps = 50/426 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKSSV 129
             A  +   S  +    P +     +  L       A R    HP   + VTGT+GK++ 
Sbjct: 65  EVASEVIVLSPGVSPKLPFIQEGIAQGALIWSEVELALR---DHPAFKIGVTGTNGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + + ++ +R+G  +   G                        ALS           + A
Sbjct: 122 TTLIGELAKRTGRPTLVAGNIGV--------------------ALSDQVEDLDGEGIIVA 161

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                    +D +++  G   N+  DH+D H T   Y  AK R+FE+  P +  AI+  D
Sbjct: 162 ELSSFQLEWVDSLRMNVGILLNVTPDHLDRHGTLDNYLAAKARIFEKQSPSD-CAILNWD 220

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FP 305
           DA    V   A +   RV+          L          +V ++  GK    +      
Sbjct: 221 DA---RVRALAPHLKARVVFFSPTS----LLAEGYGVRGDEVVLAEGGKITPIIARGELQ 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   + N + A      +G+    + + L     V  R E VGT      I       
Sbjct: 274 LRGSHNLENIMAAIAAVRELGLSWEEITQGLRDFKGVEHRQEVVGTYEGILFINDSKGTN 333

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++ E  L           IV+   G ++       M  I   +  + +V       E  
Sbjct: 334 PDASEKALYAFEE-----PIVLIAGGKNKGLDFHDFMKTIKKQVKSLVLVGTAAAEMEQA 388

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            K       GI  ++  G   EA+  AI      DV++++     +  +  + E++    
Sbjct: 389 AK-----DTGIQNYLRAGTFAEAVELAIAEAEPGDVVLLS-PACTSWDMFKSYEERGEFF 442

Query: 486 CDIIRE 491
            +++R 
Sbjct: 443 KELVRR 448


>gi|153941125|ref|YP_001389483.1| cyanophycin synthetase [Clostridium botulinum F str. Langeland]
 gi|152937021|gb|ABS42519.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F
           str. Langeland]
 gi|295317584|gb|ADF97961.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F
           str. 230613]
          Length = 873

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 139/373 (37%), Gaps = 27/373 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     +G T+T   +  +  +          A + L+++ V    +E + 
Sbjct: 494 LIAHILSFSGKK---VGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +     K  L  E + K+   +I AD
Sbjct: 551 GGLIRDGLPYDLADVGIITNVTEDHLGLGGINTLEDMAYVKA-LVGEAVKKDGYVVINAD 609

Query: 250 DAYSKEVMKRA--------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGK 298
           D  S  ++ R          N    ++S     K + L         +++      +   
Sbjct: 610 DEASISIINRIKSKIILFTKNKNNPIISQYLDNKNLVLYLDEDTIYLKKLNKNEEIINVN 669

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGR 357
                      + V NA+ A    IA+G+D   + + LE           F   N  G  
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMYNVHGTN 729

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   + +
Sbjct: 730 VILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYVYIKE 789

Query: 418 D-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D + R     +I   +  GI              +  EA++ AIE  N  D++++  +  
Sbjct: 790 DRDKRGRKHGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIMFFEEF 849

Query: 470 ET-VHIVTNGEKK 481
           E   +IV +  KK
Sbjct: 850 EPAENIVKDKIKK 862


>gi|254509131|ref|ZP_05121231.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
 gi|219547928|gb|EED24953.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
          Length = 486

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 141/428 (32%), Gaps = 50/428 (11%)

Query: 65  AQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKHP 114
            +GA   +  +  ++   S       I    P ++     +        + A  +  +H 
Sbjct: 65  QKGATVYIGHAEKNVAQASVVVVSTAINEENPEVIAARAARIPIVRRAEMLAELMRFRHG 124

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + V QI   +GL    +      S+       ++         +
Sbjct: 125 ---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RILI 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D +             F
Sbjct: 176 AEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFETLKQTFIDF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              LP    AI+  DD   +E++ R      +V++ G+ +   + +        + + T+
Sbjct: 221 LHNLPFYGQAIVCIDDPVVRELVPRISR---QVITYGFSEDADVRIDNYRQEGQQGKFTV 277

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             EGK D +    +PG     NA  A  +     I    +L  +        RF+ +G  
Sbjct: 278 IREGKADLEITLNIPGRHNALNASAAIAVATEDDISDEAILNAMAGTQGTGRRFDHLGEF 337

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T +    +  DY H    +E+ ++  R      R++++F                  L+
Sbjct: 338 ETGNGNAMLVDDYGHHPTEVEVTIQAARNGWEDKRLVMIFQPHRYSRTRDLYDDFANVLE 397

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D+ I+ D     E P        +   I   G    I   +          +L   D+
Sbjct: 398 QVDVLIMLDVYSAGEKPIAGADGRALCRTIRGRGKLDPIFVPDSQSLPSVLANVLQDGDL 457

Query: 462 LVVAGKGH 469
           ++  G G 
Sbjct: 458 VLTQGAGD 465


>gi|189220191|ref|YP_001940831.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum
           V4]
 gi|189187049|gb|ACD84234.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum
           V4]
          Length = 483

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 149/388 (38%), Gaps = 40/388 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
             +  + V+GT GK++ +S +  I + +    SF IG      +F    R T      L 
Sbjct: 114 QGKQNIVVSGTHGKTTTSSLLAWIFESASLNPSFLIG--GLPKNFTSGCRYTRGDYWIL- 170

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   +G  + +          H L           N+  DH D          A  
Sbjct: 171 --------EGDEYDTAYFDKRSKFLHYL----PQTVIINNIEYDHADIFANLGEILLAFK 218

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           RL  +L+P+    II  DD     +++ A ++   V +VG+ GK    +    +++++  
Sbjct: 219 RLI-QLIPRNGHLIIPEDDPN---IVELAKSSLAPVYTVGF-GKEAEFRITDVLYDQRGS 273

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              + G++F    P+PGE+ V NA +        GI    + +       V  R E +G 
Sbjct: 274 RFRMLGEEF--FLPVPGEYNVRNAAMCLAAAKLYGIKPEQISQGFASFLGVKRRLEVLG- 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDL 409
            + G ++  D+ H   ++   ++ +R    S R+  VF    +  +          AL  
Sbjct: 331 EACGIQVLDDFGHHPTAIYKTIQAVRQRYPSRRLWAVFEPRSNTTRRAVFQQELPQALAG 390

Query: 410 ADIAIVTDDNPR-----SE--DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           AD  ++++   +     SE   PE+I  E+   GIP F     + E ++  +E+L   D+
Sbjct: 391 ADGVVISEVANKDGLSPSERLKPEQIAQELGKKGIPSFFCASPQ-EILQKLLEVLRAGDI 449

Query: 462 LVVAGKGHETVH-----IVTNGEKKMSV 484
           +V    G           + N +K    
Sbjct: 450 VVFFSNGSFHGIPYRLVEILNNKKDHFD 477


>gi|323491028|ref|ZP_08096220.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
 gi|323314692|gb|EGA67764.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
          Length = 486

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 144/429 (33%), Gaps = 52/429 (12%)

Query: 65  AQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKHP 114
            +GA   +  +  ++   S       I    P ++     +        + A  +  +H 
Sbjct: 65  QKGATVFIGHAEENVSQASVVVVSTAINEENPEIIAARAARIPVVRRAEMLAELMRFRHG 124

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + V QI   +GL    +      S+       ++         +
Sbjct: 125 ---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RILI 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D +             F
Sbjct: 176 AEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFETLKQTFIDF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              LP    AI+  DD   +E++        +V++ G+ +   + +        + + T+
Sbjct: 221 LHNLPFYGQAIVCVDDPVVRELI---PGISRQVITYGFSEDADVRIANYRQEGQQGKFTV 277

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             +GK D D    +PG     NA  A  +     I    +L  +        RF+ +G  
Sbjct: 278 IRQGKADLDITLNIPGRHNALNASAAIAVATEDDISDEAILNAMAGTQGTGRRFDHLGEF 337

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T +    +  DY H    +++ ++  R      R++++F                  L+
Sbjct: 338 DTGNGHAMLVDDYGHHPTEVDVTIQAARNGWQDKRLVMIFQPHRYSRTRDLYDDFANVLE 397

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQD 460
             D+ I+ D     E P        +   I   G    I   +  +A+ + +   L   D
Sbjct: 398 QVDVLIMLDVYSAGEKPIAGADGRALCRTIRSRGKLDPIFVPD-SKALPSVLANVLQDGD 456

Query: 461 VLVVAGKGH 469
           +++  G G 
Sbjct: 457 LVLTQGAGD 465


>gi|121601881|ref|YP_989227.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella bacilliformis
           KC583]
 gi|166222956|sp|A1UTC4|MURC_BARBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|47779263|gb|AAT38531.1| MurC [Bartonella bacilliformis]
 gi|120614058|gb|ABM44659.1| UDP-N-acetylmuramate--alanine ligase [Bartonella bacilliformis
           KC583]
          Length = 475

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 145/435 (33%), Gaps = 51/435 (11%)

Query: 50  VGNKED-GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            G     GH    QA   G AE +V+S+A    +          + VV        L   
Sbjct: 51  KGINVHIGH----QAKNLGEAEVVVISTAIKKTNPEYIAAKEKHLPVVKRAEMLAELMRF 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           R         +A+ GT GK++  S V  +   +G     +     I+++  + R+   + 
Sbjct: 107 R-------QAIAIGGTHGKTTTTSMVAALLD-AGNFDPMVINGGIINAYGTNARMGNGNW 158

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + +    S                          +       TN+  +H+D++ +  A  
Sbjct: 159 MVVEADESD--------------------GTFLKLPADIVVVTNIDSEHLDHYGSFDAVR 198

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            +  R F E +P    A++  D    + +  R  +          Q     L      + 
Sbjct: 199 ES-FRQFVENVPFYGFAVMCLDHPEVQTLASRIDDRWVITYGANPQADVRFL-NFSMKNK 256

Query: 288 KQQVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           K    + +  +         D + P+ G+  V NA  A  +   +GI   ++ + L +  
Sbjct: 257 KAHFDVLIRSRKTGIQTELRDLVLPMSGKHNVSNATAAIAIAHELGISDEVIRKGLAEFG 316

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  RF   G+  RG  ++ DY H    ++ +L+  R  T+G++I +             
Sbjct: 317 GVKRRFTQTGSW-RGIDVFDDYGHHPVEIKAVLRAARESTNGQVIAIAQPHRYSRLCNLF 375

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAI 453
                  + AD  ++       E+P      +++   I +          +  + +    
Sbjct: 376 DDFTTCFNDADTIMIAPVYAAGEEPITGFGSKELVEHIQMASHCDVRLIDDLEDVVSIVS 435

Query: 454 EMLNKQDVLVVAGKG 468
            +    D +V  G G
Sbjct: 436 TVAKSGDYVVFLGAG 450


>gi|303242183|ref|ZP_07328672.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
 gi|302590265|gb|EFL60024.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
          Length = 882

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 132/359 (36%), Gaps = 33/359 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +    +  G +   +G T+T   +  D  +          A   LS++ +    +E + 
Sbjct: 497 LIAHTLELQGKT---VGMTTTSGIYIGDECILKGDNTGFVSARMLLSNKSIDAAVLETAR 553

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +   +AK  + E + PK   A+I AD
Sbjct: 554 GGLVRKGLGYDLADVGVITNVSEDHLGIDGVDTAEDLASAKSLVIEAVKPK-GYAVINAD 612

Query: 250 DAYSKEVMKRAHNA------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           D +++  M RA +                 +S G +  ++   ++  +     + +  + 
Sbjct: 613 DGFARYFMDRAKSKVILFSKDKHSSIMQDHISQGKRAVYLDGGEIFLVKKGVTIQL-AKT 671

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNS 353
           KD    F    E  + N L A      + +    +   L          PGRF       
Sbjct: 672 KDIPITFGGILECNIENCLAAVSALWGLDMPLETIKAGLVSFLPDTSSNPGRFNIFDMGE 731

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              ++ +DY+H     E ++K ++ + + R++ + G  GDR         +I     D  
Sbjct: 732 --FKVMLDYSHNPAGFEEVIKFVKKLEANRLVGIIGMPGDRQDSSMCSAAQICAAGFDRL 789

Query: 414 IVTDD-NPRSEDPEKIR-----AEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +D + R  +P ++        I  G+         +  +A+  AI     +D +V+
Sbjct: 790 YIKEDADLRGREPGEVAGIFYDEAIKSGVSKENVEIIYSEEKALEKAILDAQPRDFIVM 848


>gi|171462988|ref|YP_001797101.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|229620049|sp|B1XT10|MURC_POLNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171192526|gb|ACB43487.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 478

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 134/431 (31%), Gaps = 66/431 (15%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V+S+A +  +          I V+      L        G      +A+ GT GK++ 
Sbjct: 67  AVVISTAVAGNNPEVLAARAAKIPVIQRAVM-LGELMRLKQG------IAIAGTHGKTTT 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           AS V  +    GL      PT  I                     + L       V  + 
Sbjct: 120 ASLVASVLAEGGLD-----PTFVIGGKLNSAGAN-----------ARLGRGDFIVVEADE 163

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S     Q     +       TN+  DH+D +Q   A        F + +P    A++  D
Sbjct: 164 SDASFLQ-----LFPAMEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVAVLCID 218

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEG--------KDF 300
           DA  ++++         VL  G      I    V A   +   T+               
Sbjct: 219 DANVRDIIPFVSQP---VLRYGLSDDADIRAANVRADGTRMHFTVDRRTVRRHGNKPGPL 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGG 356
           +    LPG   V NAL A G+   +G+    + + L +   V  RF+  G     +    
Sbjct: 276 NITLNLPGLHNVRNALAAIGIATELGVGDEAITKALSEFGGVGRRFQRYGEIPLDSGGSF 335

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAI 414
            +  DY H    +   L   R        +V      R    R   G+    L   D  +
Sbjct: 336 TLIDDYGHHPVEMSATLAAARGAYP-DRRLVLAFQPHRYTRTRDCFGEFVQVLRSFDALV 394

Query: 415 VTDDNPRSED--PEKIRAEIIHGIPGFIEKGN-----RIEAIRTAIEM----------LN 457
           +TD  P  E   P      ++       E+ N        A+  A  +          L 
Sbjct: 395 LTDVYPAGEAKIPGADGKSLMK--AAIAEEKNSKALLNSAAVAYAASITEMPEKLRQVLK 452

Query: 458 KQDVLVVAGKG 468
             DVL+  G G
Sbjct: 453 DGDVLITMGAG 463


>gi|170760804|ref|YP_001785449.1| cyanophycin synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407793|gb|ACA56204.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A3
           str. Loch Maree]
          Length = 873

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 149/395 (37%), Gaps = 40/395 (10%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            +  + +      G  P  I+++TGT+GK++    +  I   SG     +G T+T   + 
Sbjct: 462 AKAIVGMMFKEYDGNIP--IISITGTNGKTTTTRLIAHILSISGKK---VGMTTTGGIYI 516

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +  +          A + L+++ V    +E +  GL +  L       G  TN+  DH+
Sbjct: 517 NNKCINKGDTTGYYSAKTVLTNKEVDVAVLELARGGLIRSGLPYDLADVGIITNVTEDHL 576

Query: 218 DYHQ--TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---------- 265
                 T +     K  L  E + K+   +I ADD  S  ++ R  +             
Sbjct: 577 GLGGIDTLEDMAYVKA-LVGEAVKKDGYVVINADDEASINIINRMKSKIILFTKNKNNPI 635

Query: 266 -------RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                  + L +   G  I+LKK+        V                  + V NA+ A
Sbjct: 636 IPQYLDNKNLVLYLDGDTIYLKKINKNEEIINV------NKIPITLGGKLIYNVENAMAA 689

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
               IA+G+D   + + LE           F   N  G  + +DY H     +++L++I+
Sbjct: 690 IAALIALGLDVNTIRQGLESFSNEEQNPGRFNMYNVHGTNVILDYGHNIEGYKVVLESIK 749

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI 436
            I   RII V G  GDR       +G I  +  D   + +D + R     +I   +  G+
Sbjct: 750 KINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIYIKEDKDKRGRMDGEIADLLKKGV 809

Query: 437 -------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                         +  EA++ AIE  N  D++++
Sbjct: 810 LETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844


>gi|257095425|ref|YP_003169066.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047949|gb|ACV37137.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 860

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 137/390 (35%), Gaps = 30/390 (7%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             S+FA     + P  ++AV GT+GK++    +  I    GL    +G T+T   + +  
Sbjct: 458 IASMFADGDDARIP--LVAVAGTNGKTTTVRLIASILGEQGLR---VGMTTTDGVYVEGR 512

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID- 218
           R+ T        A + L   GV    +E +  G+ +  L   +      TN+G  DH+  
Sbjct: 513 RIDTGDCSGPKSARNVLLHPGVDAAVLETARGGVLREGLGFDRCDVAVVTNIGLGDHLGL 572

Query: 219 -YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA----------HNAGCRV 267
            Y  T +     K  + + + P    A++ A D     +               N     
Sbjct: 573 SYISTVEDLSVVKRVIVQNVTPVSGVAVLNAADPMVARMADSCPGTVTFFACDRNHPLMA 632

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +    + + ++      + +   V   +              FQV NA+ A     A+G+
Sbjct: 633 MHRAQRKRVVYRDGDALVASGGGVEHRLALAAIPVTQKGAIGFQVENAMAAVAAAWALGV 692

Query: 328 DSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-- 383
           D A +   L             F   + RG  +  DY H  ++++ ++  +  + SG   
Sbjct: 693 DWATIRSGLASFVNDAQTAPGRFNVFSYRGATLIADYGHNPDAIQALVNAVDNLPSGPGS 752

Query: 384 -IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE 441
              VV    GDR         +I     D  ++  D   R     ++ A +  G+     
Sbjct: 753 KRSVVISGAGDRRDEDIRRQTEILGSAFDRVVLYQDQCQRGRADGEVLALLQQGLQSARR 812

Query: 442 KGNRIE------AIRTAIEMLNKQDVLVVA 465
                E      AI TA+  L   D+ ++ 
Sbjct: 813 ASEIQEIHGEFLAIDTALAELQAGDLCLIL 842


>gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A]
          Length = 846

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/386 (17%), Positives = 132/386 (34%), Gaps = 38/386 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   +  I+ + +DSR +      +F A+   +  G  +IP    +G 
Sbjct: 5   IESIAKSIGARRVGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSN------------------TPILVVDNTRKFLSLFASRLY 110
              V++     +  +  +R                       L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  ++ 
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLS--------PDRCIVRSPRSYNSQIGVPLSVW- 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS  +  G+    +          R+  IK   G  TN+G  H +   + Q     K
Sbjct: 176 --QLSEEAELGIFEAGISEMGEMGALKRM--IKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           + LF++        I   D+   S  V K    A     S     + +++ +V    +  
Sbjct: 232 LTLFKDC----DVVIYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHT 287

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++      D  F  P   +  + NAL     C+ +   +  + E + +L  +  R E  
Sbjct: 288 VISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVK 347

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKN 375
              +    I   Y     SL++ L  
Sbjct: 348 EGKNNCVLINDSYNSDLASLDIALDF 373


>gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
 gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
          Length = 846

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/386 (17%), Positives = 132/386 (34%), Gaps = 38/386 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   +  I+ + +DSR +      +F A+   +  G  +IP    +G 
Sbjct: 5   IESIAKSIGARRVGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSN------------------TPILVVDNTRKFLSLFASRLY 110
              V++     +  +  +R                       L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  ++ 
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLS--------PDRCIVRSPRSYNSQIGVPLSVW- 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS  +  G+    +          R+  IK   G  TN+G  H +   + Q     K
Sbjct: 176 --QLSEEAELGIFEAGISEMGEMGALKRM--IKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           + LF++        I   D+   S  V K    A     S     + +++ +V    +  
Sbjct: 232 LTLFKDC----DVVIYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHT 287

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++      D  F  P   +  + NAL     C+ +   +  + E + +L  +  R E  
Sbjct: 288 VISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVK 347

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKN 375
              +    I   Y     SL++ L  
Sbjct: 348 EGKNNCVLINDSYNSDLASLDIALDF 373


>gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
 gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
          Length = 846

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/386 (17%), Positives = 132/386 (34%), Gaps = 38/386 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   +  I+ + +DSR +      +F A+   +  G  +IP    +G 
Sbjct: 5   IESIAKSIGARRVGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSN------------------TPILVVDNTRKFLSLFASRLY 110
              V++     +  +  +R                       L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  ++ 
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLS--------PDRCIVRSPRSYNSQIGVPLSVW- 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS  +  G+    +          R+  IK   G  TN+G  H +   + Q     K
Sbjct: 176 --QLSEEAELGIFEAGISEMGEMGALKRM--IKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           + LF++        I   D+   S  V K    A     S     + +++ +V    +  
Sbjct: 232 LTLFKDC----DVVIYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHT 287

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++      D  F  P   +  + NAL     C+ +   +  + E + +L  +  R E  
Sbjct: 288 VISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVK 347

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKN 375
              +    I   Y     SL++ L  
Sbjct: 348 EGKNNCVLINDSYNSDLASLDIALDF 373


>gi|322804391|emb|CBZ01941.1| cyanophycin synthase [Clostridium botulinum H04402 065]
          Length = 873

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 139/373 (37%), Gaps = 27/373 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     +G T+T   +  +  +          A + L+++ V    +E + 
Sbjct: 494 LIAHILSFSGKK---VGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +     K  L  E + K+   +I AD
Sbjct: 551 GGLIRDGLPYDLADVGIITNVTEDHLGLGGINTLEDMAYVKA-LVGEAVKKDGYVVINAD 609

Query: 250 DAYSKEVMKRA--------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGK 298
           D  S  ++ R          N    ++S     K + L         +++      +   
Sbjct: 610 DEASISIINRMKSKIILFTKNKNNPIISQYLDNKNLVLYLDEDTIYLKKLNKNEEIINVN 669

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGR 357
                      + V NA+ A    IA+G+D   + + LE           F   N  G  
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMYNVHGTN 729

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   + +
Sbjct: 730 VILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGESFDYVYIKE 789

Query: 418 D-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D + R     +I   +  GI              +  EA++ AIE  N  D++++  +  
Sbjct: 790 DRDKRGRKHGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIMFFEEF 849

Query: 470 ET-VHIVTNGEKK 481
           E   +IV +  KK
Sbjct: 850 EPAENIVKDKIKK 862


>gi|332663138|ref|YP_004445926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331952|gb|AEE49053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 441

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 125/363 (34%), Gaps = 52/363 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R         + +TG++GK++  + V  +   +G+     G               
Sbjct: 99  EFAARYTRSF---TIGITGSNGKTTTTNLVYHLLATAGMDVAMGGNVG------------ 143

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++ +      +E SS  L+  R    +       N+  DH+D +   
Sbjct: 144 -------KSFARIVAERDYPFYVLELSSFQLEGIR--EYRPDIAMILNITPDHLDRYDYQ 194

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AK  + +    +++     ADD      ++       + + + +Q         
Sbjct: 195 LEKYAAAKFNIVKAQQAEDTFLY-NADDPNVGGQLEHYPT-QAKAVPISFQ--------- 243

Query: 283 CAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                 +   + V G  FD    PL G     NAL A  + + +GI    + E L     
Sbjct: 244 ----MTEGTRLKVGGYTFDMSTTPLMGRHNYMNALFAVQVALQVGIAPEAIQEGLNTFVN 299

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            P R E V T      I    A   +S+      +  ++   + +V   G D+     P+
Sbjct: 300 APHRLEKVATVEGVEYINDSKATNVDSV---YYALEAMSRPTVWIV--GGQDKGNDYGPL 354

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  +   +  +  +  DN       KI       +   +E G+ +EA+  A  + +  D 
Sbjct: 355 LEFVKAKVKAVVCMGLDN------RKIVQCFSGIVENIVETGSAVEAVTAAARLASPGDT 408

Query: 462 LVV 464
           +++
Sbjct: 409 VLL 411


>gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 827

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 137/389 (35%), Gaps = 28/389 (7%)

Query: 26  RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            E  I    +DSR +      +F AI     DGHL+I Q    G  + VV   +   D  
Sbjct: 20  SEVFIEHFLTDSRSLMHPQSTLFFAIRTVTGDGHLYIDQLYNHGVRSFVVKDEF---DKL 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                +   L V +  + L   A+    +    ++ VTG++GK+ V  F+ Q+       
Sbjct: 77  TQQYPDANFLEVRDVIRSLQKIAAEWRREFNIPVVGVTGSNGKTIVKEFLYQLLA----- 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-I 202
                     +     +  +  S + +  ++  ++S+    +     S   +  R++  I
Sbjct: 132 ---------DTYRVVRSPRSYNSQLGVPLSVLKMTSEDQIAIFEAGISQLGEMARIEEVI 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-H 261
           K   G  TN+G  H +   +     + K+ LF          +   D+      ++R   
Sbjct: 183 KPTIGVITNIGSAHQENFSSIAQKVDEKLLLFGGC----DRIVYNMDEPEIVAGLQRLGL 238

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            +  R  S       ++++ +    +  ++   V G ++    P   +  + N L     
Sbjct: 239 LSRARGWSRKDPKAHLYVRSIETGRDTTKLNFLVLGIEYSIEIPFTDQASIENVLTCVLT 298

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            I I        E   KL  V  R E +  N     I   Y +  NSL++ L   +   +
Sbjct: 299 TIIINPSLIDHPELFSKLEPVEMRLELIEGNKNNLIINDVYNNDINSLKIALDFQQQRAT 358

Query: 382 GRI---IVVFGCGGDRDQGKRPIMGKIAL 407
                 +++          +RP+  ++  
Sbjct: 359 DADLEPVLILTEIQQSALNERPLYSRVGE 387


>gi|146342502|ref|YP_001207550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195308|emb|CAL79333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase,
           D-alanyl-D-alanine-adding enzyme) [Bradyrhizobium sp.
           ORS278]
          Length = 458

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 94/465 (20%), Positives = 159/465 (34%), Gaps = 64/465 (13%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-----------KEDGHLFIPQAIAQGAE 69
               + E  I+ V+ DSR ++ G +FVA+ G              DG  F   A   GA 
Sbjct: 17  LAGDYPETAIDFVTQDSRAVKPGSLFVALSGTPSGGFVSSFASSRDGWEFAANAEQAGAV 76

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSS 128
           A++V                 P LVV +T    L   A     +    ++ +TG++GK+S
Sbjct: 77  AMIVPHRIE--------GVTVPQLVVTDTLIDGLWALARAARSRFHGPVIGLTGSAGKTS 128

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              F+              G +++ SSF          P+ L  A    S   V  V + 
Sbjct: 129 TKEFIA----------AYPGASASPSSF----NNFWGVPLTLCNADPSAS---VWVVEMG 171

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +  G      +  +       N+   H++   + +A    K+ +   L P     ++ A
Sbjct: 172 MNQKGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRQEKVSIARGL-PSGGILVLPA 230

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D          A     + +  G   +   L    A      VT  + G   +F      
Sbjct: 231 D--------LAAPEWSGKTIRFGGDAEVRELSH-TARGESWDVTADIAGCSVNFALTPGA 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTS 366
             +++NAL A     A G+D AL+   L ++ ++ GR       + G  + +D       
Sbjct: 282 PHRLHNALAALASVAAAGLDPALLAPELGEVGIMTGRG---VEQTVGDIVLIDDSFNGNP 338

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            S+   L  ++     GR I V G   +          K+   LA I  V    P     
Sbjct: 339 ASMAAALDGLQARPVRGRRIAVIGDMLELGDEAPAYHAKMVGHLAGIDGVFCVGP----- 393

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAI----RTAIEMLNKQDVLVVAG 466
             +   +   +P     G   + +    +    +L   DV+VV G
Sbjct: 394 --LMRHLFEALPQGRRLGWHEDPVTLDPKQVAALLAPGDVVVVKG 436


>gi|220918994|ref|YP_002494298.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956848|gb|ACL67232.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 462

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 130/408 (31%), Gaps = 54/408 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILV---VDNTRKFLSLFASRLYGKHPENILAVTGT 123
           GAE +V S    L +          + V   V+         A+R  G  P  I+ +TGT
Sbjct: 70  GAELVVASPGVPLANPEIQEARRRGVAVWGEVE--------LAARFLGGLP--IVGITGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  +    +  R    +F  G   T                     LS L   G  
Sbjct: 120 NGKSTTTALTGALLAR-DRRTFVGGNLGT--------------------PLSELVLSGEP 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             +            ++  +    +  N+  DH+D +    AY  AK RLF    P +  
Sbjct: 159 ADAAVVELSSFQLEGIERFRARVAAVLNVTPDHLDRYPDVDAYAAAKARLFATQQPDD-V 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKDF 300
           A+  A D      +  A  +   + + G+        +            +  +  G+  
Sbjct: 218 AVANARDP---RALAMAGASRADLHTFGFGAPTPASARDEGGEPGPEGTAIWFTPRGRAP 274

Query: 301 D----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +        L G     NA+ A      +G+    V   L+    +  R E V       
Sbjct: 275 ERYQLRNRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAFPGLHHRLELVAEGRGVE 334

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   +S  + L    +      +V+   G  +     P+       +  +  + 
Sbjct: 335 WVNDSKATNVDSTFVGLAAFPSGAP--RVVLIMGGRGKKAPYAPLRPLFGGRVKALLTIG 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +D P  E       ++    P     G+  +A+R A  +    DV+++
Sbjct: 393 EDAPAIERE---LGDLAPTEP----CGDLADAVRRAAVLSGPGDVVLL 433


>gi|134095970|ref|YP_001101045.1| UDP-N-acetylmuramate--L-alanine ligase [Herminiimonas
           arsenicoxydans]
 gi|166224695|sp|A4G8T7|MURC_HERAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133739873|emb|CAL62924.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Herminiimonas arsenicoxydans]
          Length = 469

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 139/432 (32%), Gaps = 53/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + IA  A+AIV S+A    +          I +V      L+       G    
Sbjct: 56  GH--AAENIAS-ADAIVTSTAVQQDNPEVVAAREKHIPIVPRA-MMLAELMRLRRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL      PT  I                L  A +
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEGGLD-----PTFVIGG-------------LLNSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    +  EA     D   L+ +  +    TN+  DH++ ++            F 
Sbjct: 148 NAKLGAGEFIVAEADES--DASFLN-LSPVIEVITNIDADHMETYEHDFEKLKQAFVEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DDA  +E+M R       + + G+    +       A+    Q T+ 
Sbjct: 205 QRLPFYGVAVLCLDDATVREIMPRISKL---ITTYGFHEDAMVRAVDAKAVDGHMQFTVI 261

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            +G          PG   V NA  A  +   +G+      + L +   V  RF   G   
Sbjct: 262 QDGYAPMQVSLNQPGMHNVQNACAAIAIARELGVSDHATQKALTEFTGVGRRFTRYGEIS 321

Query: 352 -------NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMG 403
                   +    +  DY H        +   R    GR +V+ F               
Sbjct: 322 FSAVNDKPAGSFALVDDYGHHPVETAATISAARGAYPGRRLVLAFQPHRYTRTRDLFEDF 381

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIR-------AEIIHGIPGFIEKGNRIEAIRTAIEML 456
              L   D+ ++ +     E P           A  + G    +   + ++   T + ++
Sbjct: 382 VKVLSTTDMLLLAEVYAAGEQPIVAADGRTLAHALRVAGKVDPVFVEHIVDMPATIMNIV 441

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 442 RDGDVVITMGAG 453


>gi|218131850|ref|ZP_03460654.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
 gi|217986153|gb|EEC52492.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
          Length = 444

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 145/385 (37%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPLILKLKEKGIPIISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+   +G    I +                     ++ +   +  +E SS  LD   +  
Sbjct: 129 LN---VGLAGNIGN----------------SLALQVAMEKHDYYVIELSSFQLDN--MYK 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y +AK R+ +   P+++      D    +E+ K  
Sbjct: 168 FRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     +   +   I   +   +   + +  ++E ++      L G   +YN+L A  
Sbjct: 228 LKAHPYPFAAVKEDGAIAYVEDGEVEINEPIAFNMEQEE----LALHGTHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V T  RG +   D   T+  +      ++++T
Sbjct: 284 SANLAGIKKEDIRKALSDFKGVEHRLEKVAT-VRGIQFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +    V+   G D+      I   +    + +  +   N      EK+       G+P  
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEELVRTKCSALVYLGLHN------EKLHEFFDRFGLPVA 392

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +A+  A ++  K + +++
Sbjct: 393 DVQTGMKDAVEAAFQLAKKGETVLL 417


>gi|114564953|ref|YP_752467.1| UDP-N-acetylmuramate--alanine ligase [Shewanella frigidimarina
           NCIMB 400]
 gi|122298413|sp|Q07WI6|MURC_SHEFN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114336246|gb|ABI73628.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella frigidimarina
           NCIMB 400]
          Length = 485

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 149/428 (34%), Gaps = 54/428 (12%)

Query: 67  GAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA+ I+   A S++          I    P ++     +        + A  +  +H   
Sbjct: 65  GAKIIIGHQAQSVEQVDVVVVSTAINPQNPEIIAAKELRIPIVRRAEMLAELMRYRHG-- 122

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S +  +  ++        PT  I                    ++ 
Sbjct: 123 -VAIAGTHGKTTTTSLIASVYGQADRD-----PTFVIGGLLNSAGTNARLGTSRY-LIAE 175

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + +                ++ +    TN+  DH+D +             F  
Sbjct: 176 ADESDASFL---------------HLQPMVSVITNIEADHMDTYGGDFEKLKTTFVDFLH 220

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            LP    A++  DD   +E+M R      +V++ G+ +   +         ++   T+  
Sbjct: 221 NLPFYGVAVMCIDDEVIREIMPRIGR---QVVTYGFSEEADVQAINFAQNGHQSSFTVKR 277

Query: 296 EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---T 351
            GKD  D +  LPGE  V NAL A  +     ID + +++ L +   +  RF+ +G   T
Sbjct: 278 HGKDNVDIVLNLPGEHNVLNALAAIAVASEDDIDDSAIVQALAEFEGIGRRFQHLGEFET 337

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +    +  DY H  + +   +K  R      R+++ +                  L   
Sbjct: 338 PNGSVMLVDDYGHHPSEVLATIKAARAGWPDKRLVMAYQPHRYSRTRDLYEDFVDVLSQV 397

Query: 411 DIAIVTDDNPRSEDP------EKIRAEI-IHGI--PGFIEKGNRIEAIRTAIEMLNKQDV 461
           D  ++ D     E P        +   I + G   P FI   +++ A+    ++L   D+
Sbjct: 398 DCLLLLDVYAAGEAPIPGADGRALCRSIRLRGQIDPIFIASPDQLAAVLP--DVLQHGDL 455

Query: 462 LVVAGKGH 469
            +  G G+
Sbjct: 456 FMTQGAGN 463


>gi|315504606|ref|YP_004083493.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora sp. L5]
 gi|315411225|gb|ADU09342.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora sp. L5]
          Length = 493

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 90/413 (21%), Positives = 145/413 (35%), Gaps = 45/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V SSA               + V+  +       A+ + G+     +AV GT GK
Sbjct: 76  GVDTVVYSSAIPQDHLEMVEARRRGLRVLHRSEA----LAAAMTGR---RTVAVAGTHGK 128

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           +S  S V  + Q++G     +  G  S + S A                          H
Sbjct: 129 TSTTSMVTMVLQQAGTDPSFVIGGEISEVGSGAHHGTG--------------------EH 168

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             VEA        R   I +      TN+  DH++ +        A    F  L      
Sbjct: 169 FVVEADES----DRSFLIYRPFVSIITNIEADHLNTYGDLATLEAAFAE-FARLTDPAGF 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-D 301
            I  ADDA    + +     G RV + G      + + +V +  +  +    VEG+   +
Sbjct: 224 VITCADDAGGCRLAETLRAEGRRVWTYGESADADLRMSEVVSSAHGVRYQAEVEGRPLGE 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG     N+  A      + +  A     L     V  RFE  G  + G  +Y +
Sbjct: 284 IRLPVPGRHMALNSAAAVLAAYLLDLPVAAAEAALGAFPGVRRRFERKGA-ADGVLVYDE 342

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YA+   S+ + L+ +R +   GR+IVVF                 AL +AD  ++ +   
Sbjct: 343 YAYHPTSMTLALQTLREVAGDGRLIVVFQPYRLYRTRDNQAEIAAALGIADEVVLLEVFG 402

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNRIEA----IRTAIEMLNKQDVLVVAGK 467
             E   P +  A +I  +P   E+   +EA               DV+V  G 
Sbjct: 403 PGETRRPGEGSAALIQEVPLPAERKVFVEAWDDVPGEVARRARTGDVVVTMGA 455


>gi|312114843|ref|YP_004012439.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219972|gb|ADP71340.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 477

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 141/431 (32%), Gaps = 52/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
            AQG + ++   A +L+  S       ++   P L     R           A+ + G  
Sbjct: 49  AAQGIKVLIGQDAANLEGASVVCISSAVKEGNPELQAARERGLPVFSRAETLAALMKGY- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + VTG+ GK++  S +  + +++GL         T+          T + I  ++ 
Sbjct: 108 --RTICVTGSHGKTTTTSMIGWVMEKAGLDP-------TVLVGGVLRSWGTNARIGASRW 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +     +  +               +    G  TN+  +H+DY+ + +A   A  R 
Sbjct: 159 M--VVEADESDATFI------------KLPTEIGVATNIDPEHLDYYGSVEALHEA-FRT 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQ 290
           F   +P+   A+   D    +E+ +   A      + S G        +  V +      
Sbjct: 204 FLRQIPQTGVAVAGIDHPVVRELTQELAASGELPPLTSFGRALDARVKIDNVVSQGASVM 263

Query: 291 VTISVEGKDFD-------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + + GK  +           +PG     NA  A   C+  G+ +  + + L     V 
Sbjct: 264 FDVVIAGKPGEPPLRHTGVKLQVPGAHNALNAAAAIAACLHAGLSADQIFDGLASFEGVD 323

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RF   G    G  IY DYAH    +  +L   R    GR+I V                
Sbjct: 324 RRFSPRG-EWNGVAIYDDYAHHPAEIAAVLSAARGAARGRVIAVVQPHRYSRLQSLFGEF 382

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLN 457
                 AD  +VT      E P  I  + +       G             + T   +  
Sbjct: 383 CACFADADTVVVTPVYSAGEQPNGIDRDTLVDGLRQQGHARIYPVDGEDTLVSTLAAVAQ 442

Query: 458 KQDVLVVAGKG 468
             D+++  G G
Sbjct: 443 PGDLVLTLGAG 453


>gi|303232802|ref|ZP_07319487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
 gi|302481288|gb|EFL44363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
          Length = 545

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 83/515 (16%), Positives = 153/515 (29%), Gaps = 101/515 (19%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  DSR +Q G +FVA +G   +G+ +  +AI  GA  I ++   S     A  ++   
Sbjct: 33  DVVIDSRRVQKGSMFVAFIGEHTNGNDYALRAIEAGAACICLTQDASQDLICAAEQNGCV 92

Query: 92  ILVV--DNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +L    D+   FL   AS          ++ +TG+ GK++      Q            G
Sbjct: 93  LLRAQNDDAETFLLRLASWWRTQNMHWIVVGITGSCGKTTTKDLCAQALATRYRVHATQG 152

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +                    LS  +   V    +  +  G               
Sbjct: 153 NFNNLIGVPLT-------------ILSASAQDEVIVCEMGMNHPGELATLSRVALPCLCV 199

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE------------- 255
            TN+G  HI    +++A   AK+ +   +      +  +A +  S +             
Sbjct: 200 ITNIGTSHIGILGSREAIATAKLEIITAIRGYTGSSKTHASEHASAQLPVQKPLPAEIPP 259

Query: 256 -VMKRAHNAGCRVLS-----VGYQGKFIHLKKVCAIHNKQQVTISV-------------- 295
            ++  AH+  C  L+       Y  +        + H    + IS               
Sbjct: 260 MLLLDAHDDFCAYLTRHAQQYEYDNEAGVPAHAGSAHGGSNLRISYIDHGQHAAEPTPAA 319

Query: 296 ------------------------------------EGKDFDFLFPLPGEFQVYNALVAA 319
                                               +G+        P +    +AL A 
Sbjct: 320 SSSQAASISAGAVCIRTQAPISLDEHGCAHTQLIYADGETHALSMSQPSKAACIDALFAL 379

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   +  D +  +  +E    V  R E +    +   I   Y  +  S+   L  +   
Sbjct: 380 AIADELACDRSAAIRAIEACSCVHMRLEEISRPHKPFIIDDSYNASPASIAQALAVLHHC 439

Query: 380 TSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIV--TDDNPRSEDPEKIR--- 429
           T     +     V   G    +    I    A    D+ +    +D  R  +  +     
Sbjct: 440 TGYTRHIAILGEVGELGNQSARLHDYIGAYAAASGVDMLVFVGGEDAKRMVEAARTMGYP 499

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AE +H +    E   RI        +L + D ++V
Sbjct: 500 AEQLHYVRDVHEAQLRIA------PLLRETDAVLV 528


>gi|226356746|ref|YP_002786486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Deinococcus deserti VCD115]
 gi|226318736|gb|ACO46732.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Deinococcus
           deserti VCD115]
          Length = 433

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 146/448 (32%), Gaps = 75/448 (16%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR       FVA+ G +  G+ F+  A+A GA  ++        D         
Sbjct: 22  RRLTWDSREASPDVAFVALPGERMHGNAFVEAALAAGAPFVLT-------DLDVPRALRV 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P     N R  L  +A +   ++   ++ +TG++GK++  S+     +            
Sbjct: 75  PSQEESNARDALFAWARQERARNSL-VVGITGSAGKTTAKSYAAAALEA----------- 122

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                      +    P      + Y +S     V +     G     +D ++   G  T
Sbjct: 123 -------HYMPVYNTMPAIACFLIEYGASDRPLVVEMGIDRIGEMAELVDLVRPDVGVVT 175

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           ++G  H++   + +     K  + +    L     A  Y+ +                V 
Sbjct: 176 SIGPAHLEQLGSIEGIAREKGVILQGRRALVGAQAAPYYSQNPG--------------VE 221

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           S G+       + +         +        D   PL    Q   A++   L    GI 
Sbjct: 222 SYGFGNVTHAGQDLQVTPEGAGFSY----GGVDVALPLAAPVQAEAAVLGMVLAQQAGIP 277

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
                  L ++ +  GR+           +  D Y  +  +++  L  +  +  GR I V
Sbjct: 278 LEAAASRLAQVSLPGGRYRVHPGRY---TVIDDAYNASPLAVQAALDALGAL-PGRRISV 333

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446
            G   +    +R +  ++     +                 RA++ +G+ P   E G+R 
Sbjct: 334 LGRMLELGPTERELHAQVGSYARE-----------------RADLTYGVGPFAAELGDRA 376

Query: 447 EA-----IRTAIEMLNKQDVLVV-AGKG 468
            A     +      +   DV+++ A +G
Sbjct: 377 FATVPELLGALTAEVRDGDVVLIKASRG 404


>gi|302878822|ref|YP_003847386.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
 gi|302581611|gb|ADL55622.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
          Length = 856

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 146/385 (37%), Gaps = 30/385 (7%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +F +   G+ P  ++AV GT+GK++    +  I    G    ++G T++   + Q  R+ 
Sbjct: 461 MFEAGNDGRIP--LVAVAGTNGKTTTVRLISHIL---GCQGLRVGMTNSDGVYIQGKRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID-YHQ 221
           T        A + L    V     E +  G+ +  L   +      TN+G  DH+   + 
Sbjct: 516 TGDCSGPKSARNVLLHPDVDAAVFETARGGVLREGLAFDRCNVAVVTNIGMGDHLGLNYI 575

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--------RAHNAGCRVLSVGYQ 273
           +     +   R+  + +     A++ A D  S  +           A +    V++    
Sbjct: 576 STVEDLSVVKRVVVQNVALSGVAVLNAADPMSAAMADICPGSVTFFAQDRSHPVMAAHRA 635

Query: 274 G--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              + ++++    +  +      VE             FQ+ NA+ +     A+G+D   
Sbjct: 636 QGKRVVYVEGNQVVACENTFEQRVELSHIPITRNGVIGFQIENAMASIAAVWALGVDWDT 695

Query: 332 VLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   L          PGRF F   + RG  +  DY H  +++  ++  ++ + + + +VV
Sbjct: 696 IRRGLASFVNDAATAPGRFNFF--DYRGASVIADYGHNPDAILALISAVQNMPAKKRMVV 753

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFI------ 440
               GDR      +  +I  D+ D  I+  D   R     ++ + +  G+          
Sbjct: 754 ISGAGDRRDEDIRLQTEILGDVFDEVILYQDQCQRGRADGEVLSLLRAGLINAKRAKITD 813

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVA 465
           E      AI TA+  L   D+ ++ 
Sbjct: 814 EINGEFLAIDTALARLMPGDLCLIL 838


>gi|325280027|ref|YP_004252569.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311836|gb|ADY32389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 449

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 157/425 (36%), Gaps = 44/425 (10%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQ 134
           A  L   S  I    P++V    R    +      G+H    ++ +TG++GK++      
Sbjct: 61  AAELVVKSPGIPDTVPMVVALRERGIEVISEIEFAGRHTEAKMVCITGSNGKTTTTLLTC 120

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I   +G+ +   G                          + ++        VE SS  L
Sbjct: 121 HILTTAGIDAGLAGNVG-------------------RSLAAQVAEDAHPLYVVELSSFQL 161

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           D   +   +      TN+  DH+D +    + Y ++K R+   + P++    IY  D+ +
Sbjct: 162 D--GMFDFRADIAVLTNITPDHLDRYDHKFENYIDSKFRILNNMRPQD--LFIYGLDSEA 217

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDF---LFPLP 307
                R      R+    Y  + I  K  C   A    ++V + +E + F        + 
Sbjct: 218 VGHRLRQVRVVPRMAGFIYADRSIWEKNTCRSGAWMEGEEVVVQLENRQFRIAKQEISIQ 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   VYNA+ A   C+ +G+    + E L     V  R E V      G  Y++ +  +N
Sbjct: 278 GRHNVYNAMAAILACMQVGVSDEKIAEGLRTFPQVEHRLETVRVVE--GVTYINDSKATN 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++     + ++T+  I +    G D+      +   +   +  +  +  DN       K
Sbjct: 336 -VDSAWYALDSMTTPVIWI--AGGTDKGNDYSVLFDLVRQKVKVLICMGVDN------RK 386

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +  +   GI   ++  +  +A+  A +   + D ++++     +  +  N E +  +   
Sbjct: 387 LI-DNFSGICQVVDTHSLKDALAAARQYAVEGDTVLLS-PCCASFDLFKNYENRGELFKA 444

Query: 488 IIREI 492
            ++E+
Sbjct: 445 AVKEL 449


>gi|296532819|ref|ZP_06895494.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
 gi|296266856|gb|EFH12806.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
          Length = 478

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 153/435 (35%), Gaps = 63/435 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA  +VV+S    +D    + +   ++ V    + L+      +G    
Sbjct: 59  GHD----AGNLGAAQVVVTSTAVKRDNPEVVAARQRLIPVVRRAEMLAELMRLKWG---- 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  + + + L    I     I+++  + RL     +       
Sbjct: 111 --IAIGGTHGKTTTTSLVATVLEAAKLDPTVING-GIINAYGTNTRLGEGDWM------- 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RL  +   A   TN+  +H+D+  T++A      + F 
Sbjct: 161 ----------VVEADESDGSFLRLPAV---AAVVTNMDAEHLDHWGTEEAMKQGYAQ-FV 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
             +P    A++ AD    + ++        R+++ G+     +  +++          ++
Sbjct: 207 GNIPFYGFAVLCADHPNVQAMIPHLDR---RLITYGFSPQADVRAERLITDRMGATFEVT 263

Query: 295 VEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           V+ +             P+ G+  V NAL A  + I + ID   +   L     V  RF 
Sbjct: 264 VQDRLTGRSRSLKPMRLPMLGQHNVQNALAAIAVGIEMDIDEGTIRSALLGFKGVKRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG    G +I  DY H    +  +LK  R   +  +I V          +        +
Sbjct: 324 RVG-EVNGVQIIDDYGHHPVEIAAVLKAARQAGARDVIAVVQPHRYSRLKQLFEEFCQCM 382

Query: 408 DLADIAIVTDDNPRSED--PEKIRAEIIHG-----------IPGFIEKGNRIEAIRTAIE 454
           + A   IV D     E   P   R  +I G           +PG       I AI     
Sbjct: 383 NDAGTVIVADVYAAGEQPIPGADRDALIDGLRAHGHRSVVPLPGPDSLPEMINAI----- 437

Query: 455 MLNKQDVLVVAGKGH 469
                D +V  G G+
Sbjct: 438 -AKPGDYVVCLGAGN 451


>gi|238918679|ref|YP_002932193.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella ictaluri
           93-146]
 gi|238868247|gb|ACR67958.1| UDP-N-acetylmuramate--alanine ligase, putative [Edwardsiella
           ictaluri 93-146]
          Length = 491

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 47/419 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A +  +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 83  ASVVVVSTAIAADNPEIIAAREARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 136 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
                         ++ +    TN+  DH+D YH   +         F   LP    A++
Sbjct: 188 -------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVL 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   +E++ R                    +               +          
Sbjct: 234 CIDDPVIRELLPRV-GRQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRLAVTLNA 292

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI-- 358
           PG     NA  AA +    GID   +L  L++      RF+F+G       N+R GR+  
Sbjct: 293 PGRHNALNAAAAAAVASEEGIDDEAILRALDRFQGTGRRFDFLGEFSLQHVNNRPGRVML 352

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    ++  +K  R      R+++VF                  L   D+ ++ D
Sbjct: 353 VDDYGHHPTEVDATIKAARAGWPDRRLVMVFQPHRFTRTRDLYDDFANVLSQVDVLLMLD 412

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E P        +   I   G    +   +     +T  + L + D+++  G G+
Sbjct: 413 VYPAGEHPIPGADSRSLCRSIRGRGKLDPVLVSDPATLAQTLAQFLQEGDLILTQGAGN 471


>gi|86137681|ref|ZP_01056258.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. MED193]
 gi|85826016|gb|EAQ46214.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. MED193]
          Length = 470

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 101/299 (33%), Gaps = 18/299 (6%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + VEA       +RL          TN+  +H+++        +     F   +P   
Sbjct: 161 EWMVVEADESDGTFNRLPAT---IAVVTNIDPEHMEHWGDFDRLRDG-FHEFVSNIPFYG 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFD 301
            A+  +D A  + ++ R  +          Q                  + +  EG+  +
Sbjct: 217 VAVCCSDHAEVQALVGRITDRRVVTYGFNAQADVRATNLTYKAGVAHFDIHLQAEGQVIE 276

Query: 302 -FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG+  V NAL A  +   +G+++  + E L     V  RF  VG    G  I  
Sbjct: 277 GCSLPMPGDHNVSNALSAVAVARHLGMNTNEIREALANFGGVNRRFTKVG-EVDGVTIID 335

Query: 361 DYAHTSNSLEMILKNIRT----ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           DY H    +  +LK  R         R+I V                    + AD+  + 
Sbjct: 336 DYGHHPVEIAAVLKAARQAIADTPGARVIAVHQPHRYSRLSDLFEDFCACFNEADVVAIA 395

Query: 417 DDNPRSEDP--EKIRAEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVAGKG 468
           +     EDP     R +++ G+     +  R     + +   + E     D++V  G G
Sbjct: 396 EVFAAGEDPISGASRDDLVAGMIRHGHRHARALLDEDDLERLVREQARPGDMVVCLGAG 454


>gi|311104877|ref|YP_003977730.1| cyanophycin synthetase 1 [Achromobacter xylosoxidans A8]
 gi|310759566|gb|ADP15015.1| cyanophycin synthetase 1 [Achromobacter xylosoxidans A8]
          Length = 857

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 138/386 (35%), Gaps = 31/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           ++A    G+ P  ++AV GT+GK++       I   +G     +G T++   +  + R+ 
Sbjct: 461 MYADGDDGRIP--VVAVAGTNGKTTTVRLTAHILGAAGNR---VGMTNSDGVYVDNLRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDH--IDYH 220
           T        A S L    V     E +  G+ +  L   +      TN+G  DH  + Y 
Sbjct: 516 TGDCSGPRSARSVLMHPDVDAAVFETARGGILREGLAFDRCNVAIVTNIGMGDHLGLGYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------------RAHNAGCRVL 268
            T +     K  + + + P    A++ A D    E+              R H       
Sbjct: 576 STVEDLAVVKRVIVQHVHP-SGTAVLNAADPIVAEMAASCPGSITYFAEDRNHPVLATHR 634

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +  +     +       + T                 FQV NA+ +     A+G+D
Sbjct: 635 AQGLRCVYRDGDAIVTAQQGAEET-RYPLAAIPLTRNGTITFQVENAMASIAAAWALGLD 693

Query: 329 SALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + ++   L             F   + RG  +  DY H  +++  +++ +  + + R  V
Sbjct: 694 TDIIRRGLATFVNDAQTAPGRFNVFDYRGATVIADYGHNPDAILALVRAVDAMPAKRRSV 753

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V    GDR      +  +I  D  D  ++  D   R     ++ A +  G+       + 
Sbjct: 754 VISGAGDRRDEDIRMQTEILGDAFDDVLLYQDQCQRGRADGEVLALLQQGLVNASRSKHV 813

Query: 446 IE------AIRTAIEMLNKQDVLVVA 465
            E      AI TA+  L   D+ ++ 
Sbjct: 814 EEIHGEFLAIDTALARLGAGDLCLIL 839


>gi|328675240|gb|AEB27915.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida
           3523]
          Length = 451

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 140/407 (34%), Gaps = 37/407 (9%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKSSVASF 132
           Y +  +S+ I +N P+L    T        ++F + L      + LAVTGT GK++ +S 
Sbjct: 62  YDIVVYSSAILNNHPLLSQARTLGIQCLQRAMFLAVLMKDFSYS-LAVTGTHGKTTTSSI 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +  +                   D   +      +    S +   G   + +EA   
Sbjct: 121 LATLLCQL------------------DKHSSFVVGGVVKHVDSNIQVNGTDKLVIEADES 162

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADD 250
                 L          TN+  DH+  ++     +   +  F   + KES   IY  ADD
Sbjct: 163 DASFLYLS---PQVAIVTNIDLDHMATYKNS---YQNLLENFANFISKESVKSIYLCADD 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              ++++ +       + S G+     + +             I  +G +  F   LPG 
Sbjct: 217 QGCRDLLAKYTLTDKNITSYGFSNDADVQIYDYHIADEITHFKIIYKGDELSFKLQLPGR 276

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSN 367
           + V NA      C+ +G     +   L K+  V  RF+      +     +  DY H   
Sbjct: 277 YNVQNATACIITCLDLGFKYEDISNALIKVAGVARRFDIYTKIISGYQVTVIDDYGHHPV 336

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-- 424
            +   L  +R    + +II VF                 AL LAD  I+       E   
Sbjct: 337 EVANSLSAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPKALALADQLILLPTYSAGEQVI 396

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                 +I   +  ++   +   AI    E+ N   V++V G G  T
Sbjct: 397 KGAESQDIAKELSQYLLADSFDHAIYFLEELANDDTVVLVQGAGDVT 443


>gi|291557260|emb|CBL34377.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium siraeum
           V10Sc8a]
          Length = 461

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 139/433 (32%), Gaps = 50/433 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV ++A    +        + +  V+   + L L  S          + V+GT GK
Sbjct: 67  GADLIVYTAAIMSDNPELIAAKASGVKTVERC-ELLGLVTSWYN-----KAVCVSGTHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ +S +  +     +    +  G    I                 A +   +  +    
Sbjct: 121 TTTSSMLTHMYLAQNVDLSTVIGGKLKAIGG------------SGRAGSSDVMVCEACEF 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                       +    +        N+  DH+D+ +T      +  +  +         
Sbjct: 169 S-----------NTFLHLFPNISIILNIDADHLDFFKTMDNLRASFTKFCDN---TTDIL 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEGKDFD- 301
           ++  DD  +   +K A     ++++ G   K  +  +        +    +   G   + 
Sbjct: 215 VVNGDDENTMRAVK-ASGFDKQIITFGKTDKNRYYPENIKRISDFQTDFDLMENGSKIER 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   V NA+ A    +A G+    + + L        RFE + T   G  +  D
Sbjct: 274 ISIHVPGAHNVLNAVAACAAALATGVTPENINKGLSTFWGAGRRFERLATIG-GITVVDD 332

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH    +   LK  + +    R+  V                  AL++AD  ++T+   
Sbjct: 333 YAHHPAEVAATLKTAKAMQDFKRVWAVHQPFTYSRTYTLMDDFASALEIADKVVLTEIMG 392

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             E        A++   IPG        E  R   +     D+++  G G        + 
Sbjct: 393 SREKNTYNVYSADLAAKIPGCKWFPTFEEVARYVADNAESGDMIITLGCG--------DV 444

Query: 479 EKKMSVDCDIIRE 491
            K      +I+RE
Sbjct: 445 YKVAFRIEEILRE 457


>gi|16126785|ref|NP_421349.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter crescentus
           CB15]
 gi|221235565|ref|YP_002518002.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter crescentus
           NA1000]
 gi|23821884|sp|Q9A5A6|MURC_CAUCR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765989|sp|B8H086|MURC_CAUCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13424109|gb|AAK24517.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter crescentus CB15]
 gi|220964738|gb|ACL96094.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter crescentus
           NA1000]
          Length = 473

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 146/431 (33%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA AIV S+A    +       +  + +V    +   + A  +  +   
Sbjct: 63  GHD---AAHVEGASAIVYSTAVKADNPEMVAGRDKRLPLV----RRAEMLAELMRLQFS- 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +    GL    +     I+++  + +              
Sbjct: 115 --VAVGGTHGKTTTTSMVAALLDAGGLDPTVVNG-GIINAYGTNAK-------------- 157

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G   V     S G        +K      TN+  +H+D+     A      + F 
Sbjct: 158 --VGEGDWIVVEADESDGSFLK----LKSTVAIVTNIDAEHLDHWGDFDAVKKG-FQDFI 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P    A +  D    + +  R  N          Q + + +  +          I V
Sbjct: 211 QNIPFYGFAAVCTDHPEVQALTSRIENRRLVTYGTNPQAE-VRVSNIEMGPEGATFDIIV 269

Query: 296 EGKDFD------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +         P+ G   V NA  A  +   +G+D+  + + L     V  RF   
Sbjct: 270 SPRAGEAVRYDGLKMPMAGHHNVLNATAAVAVARELGVDAEAIAKGLAGFGGVKRRFTTT 329

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALD 408
           G  + G R+  DY H    +  +LK  R +T  G++I V                    +
Sbjct: 330 GV-ANGIRVVDDYGHHPVEIAAVLKAARAVTPNGKVIAVVQPHRFTRLRDLMTEFSSCFN 388

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIE-------AIRTAI-EMLNK 458
            AD  IV D     E   P   R  ++ G+  F   G+R         A+   I      
Sbjct: 389 DADTVIVADVYTAGEQPIPGVDRDALVAGLKKF---GHRRALPLENPTALPRLIAAEATS 445

Query: 459 QDVLVVAGKGH 469
            D++V+ G G 
Sbjct: 446 GDLVVLLGAGD 456


>gi|111018100|ref|YP_701072.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
 gi|123145349|sp|Q0SHS2|MURC_RHOSR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110817630|gb|ABG92914.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
          Length = 503

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 100/474 (21%), Positives = 153/474 (32%), Gaps = 97/474 (20%)

Query: 65  AQGAEAIVVSSAYSLQDFS----------ATIRSNTPILVVDNTRKFL-----SLFASRL 109
           A+GA+  +   A +L              A I  + P LV    R        ++ AS +
Sbjct: 51  ARGAQVRIGHDAGALDLLPGGPTVVVTTHAAIPKDNPELVEAARRGIPVILRPAVLASLM 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPI 168
            G      L V+GT GK+S  S +    Q  G    F +G     +     +        
Sbjct: 111 QGH---RTLLVSGTHGKTSTTSMLVVALQHCGFDPSFAVGGELNEAGTNAHHGSG----- 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                        V     + S   L Q+     +      TN+  DH+DY  + +AY  
Sbjct: 163 ------------DVFVAEADESDGSLLQY-----EPDVVVVTNVEADHLDYFGSTEAYIQ 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVG-YQGKFIHLKKVCA 284
                F   L      +   DD  S  + +R       G RVL  G  +        V  
Sbjct: 206 V-FDDFAARLSPGGLLVACLDDPGSAALAQRVAARGLPGVRVLGYGSAEDADGAFASVDG 264

Query: 285 IHNKQ--------------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           +                  Q  ++ E         +PG     NAL A       G D  
Sbjct: 265 VEVGARLLSFEARDVGGVLQFQLAGEQSPRTVRMGVPGRHMALNALAALLAAREAGADVD 324

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-------------- 376
            +LE +     V  RF+F G    G R++ DYAH    +  +L                 
Sbjct: 325 EILEGIAGFGGVHRRFQFTG-REHGVRVFDDYAHHPTEVRAVLGAAADLVRQPHEADRRE 383

Query: 377 --RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
              ++ SG++IVVF                 ALDLAD  +V D     E+P       + 
Sbjct: 384 SEDSVRSGKVIVVFQPHLYSRTATFAEEFGHALDLADEVVVLDVYGAREEP-------LP 436

Query: 435 GIPGFIEK----------GNRIEAIRTAIEMLNKQDVLVVAGKGHETV---HIV 475
           G+ G +             +  +A R    + +  DV++  G G  T+    I+
Sbjct: 437 GVSGALVALSVSKPVHYQPDLSQAPRQVAALASPGDVVITMGAGDVTMLGNQIL 490


>gi|332638190|ref|ZP_08417053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           cibaria KACC 11862]
          Length = 447

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 146/408 (35%), Gaps = 46/408 (11%)

Query: 65  AQGAE-------AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PEN 116
           A+GA        A++      +++    I    P+LV         +    +  K+    
Sbjct: 47  ARGATFTTEQTTALLTGVDLVVKNP--GIPYTIPVLVAAKDAGIPIVVEVAVAQKYIRGE 104

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TG++GK++    +  + +    S  QI     I +   +   +      L   LS 
Sbjct: 105 WIALTGSNGKTTTTEMIAAVLRTQATSDHQIVVAGNIGTPVSEVAPSLRDTDTLVTELSS 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G+                    K      TN+   H+DYH +++ Y  AKM + + 
Sbjct: 165 FQLMGM-----------------PEAKPNIAIITNIFASHLDYHGSRENYVAAKMGITKN 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +   +I  D A  +E+ ++       V  +       +       +  + V  + E
Sbjct: 208 QT-ADDYLVINYDRAEWRELAQQTAATVVPVSRLDNSEDGAYEHDGQLYYQGELVMAAAE 266

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG+  V NALVA  +     + +  + E L +   V  R +FVGT   G 
Sbjct: 267 -------LGVPGDHNVENALVAIAVGKLRHVPTNDIAEALRRFTGVEHRLQFVGT-FDGR 318

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           ++Y D   T   +E     +   T+   +V+   G DR   +  ++  +   +  + +  
Sbjct: 319 QVYNDSKAT--DIEATEMALSGFTAP--VVLLAGGLDRGDDQMRLLQAMKAHVKALIVF- 373

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +  +K+ A         +   +   A+  A E+    D++++
Sbjct: 374 -----GQTADKVAAVGEALAIPVVHATDAPAAVAPAFELSEPGDIVLL 416


>gi|167647625|ref|YP_001685288.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter sp. K31]
 gi|189028981|sp|B0T827|MURC_CAUSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167350055|gb|ABZ72790.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter sp. K31]
          Length = 472

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/429 (19%), Positives = 145/429 (33%), Gaps = 51/429 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA AIV S+A    +       +  + +V    +   + A  +  +   
Sbjct: 63  GHD---AAHVEGASAIVYSTAVKADNPEMVAGRDKRLPLV----RRAEMLAELMRLQFS- 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +   +G     +     I+++  + +              
Sbjct: 115 --VAVGGTHGKTTTTSMVAALLD-AGALDPTVVNGGIINAYGTNAK-------------- 157

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G   V     S G        +K      TN+  +H+D+  T  A      + F 
Sbjct: 158 --VGEGDWIVVEADESDGSFLK----LKSTVAIVTNIDAEHLDHWGTFDAVKKG-FQDFI 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E +P    A +  D    + +  R  N          Q + + +  +       Q  I V
Sbjct: 211 ENIPFYGFAAVCTDHPEVQALTARIENRRLVTYGTNPQAE-VRVSNIQMGPEGAQFDILV 269

Query: 296 EGKDFDFLFP------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                D +        + G   V NA  A  +   +G+D+  +   L     V  RF   
Sbjct: 270 SPLSGDLVLYEGLKMPMAGHHNVLNATAAVAVARELGVDADAIRAGLAGFGGVKRRFTTT 329

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  + G RI  DY H    +  +LK  R +++G++I V                    + 
Sbjct: 330 GV-ANGVRIVDDYGHHPVEIAAVLKAARAVSTGKVIAVVQPHRFTRLRDLMTEFSSCFND 388

Query: 410 ADIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAIR-------TAIEMLNKQD 460
           AD  IV D     E P     R  ++ G+  F  +  R  A+                 D
Sbjct: 389 ADTVIVADVYTAGEAPIEGVDRDHLVEGLKKFGHR--RALALESPAALPALIAAEAQSGD 446

Query: 461 VLVVAGKGH 469
           ++V+ G G 
Sbjct: 447 LVVLLGAGD 455


>gi|241191221|ref|YP_002968615.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196627|ref|YP_002970182.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|240249613|gb|ACS46553.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251181|gb|ACS48120.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295794214|gb|ADG33749.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 513

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 132/430 (30%), Gaps = 56/430 (13%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSV 129
               +  +S+ I+ + P +V              + A  + GKH    + V G  GK++ 
Sbjct: 83  QDAQVVVYSSAIKPDNPEIVAAVANGAQLVHRSDILALLMNGKH---AVTVAGAHGKTTT 139

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  I   +G             S+A    +  P    L    +   +  V       
Sbjct: 140 SSLLAHILMHAGTGE------LADPSYAIGGSIQGPDGTTLDGGHAGKGTVLVAEADESD 193

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S                  TN   DH+D++ T++ Y  A     + +       I+  D
Sbjct: 194 GSFA-------KYHPDIEIITNAEADHLDHYHTEENYHAAFA---DHVTHARRAVIMCVD 243

Query: 250 DAYSKEVMKR-AHNAGCRVLSVGYQGKF------------IHLKKVCAIHNKQQVTISVE 296
           DA +  V++  A     +V++                   I  +   A    +   I + 
Sbjct: 244 DAGALAVLRSLAPEDARKVIAYSTHTADELGDLNGATFVHIASEHESANSGTENFVIDIP 303

Query: 297 ------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                          +PG     NA  A    + +G+D+               RF+  G
Sbjct: 304 AALVGADVALPVSLRIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFLGANRRFQIRG 363

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T S    +  DYAH    +  +LK   R     ++ V+F                 AL L
Sbjct: 364 TVSD-ITVVDDYAHHPTEITALLKAARRRYPDSQLHVLFQPHLFSRTQFFAQEFADALSL 422

Query: 410 ADIAIVTDDNPRSED--------PEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459
           AD  IVT   P  E         P  I  +  HG   +  +   +   A +         
Sbjct: 423 ADDVIVTGIFPAREKQSDFPQVTPNTIV-DNAHGDGSYEIEAVDDMSLAAQMLAMRAQPG 481

Query: 460 DVLVVAGKGH 469
           DV+   G G 
Sbjct: 482 DVIFTVGAGD 491


>gi|227497591|ref|ZP_03927814.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces urogenitalis
           DSM 15434]
 gi|226832960|gb|EEH65343.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces urogenitalis
           DSM 15434]
          Length = 495

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 89/452 (19%), Positives = 160/452 (35%), Gaps = 66/452 (14%)

Query: 56  GHLFIPQAI--AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH     A+        +VVS+A    +            V+  + + L+L A       
Sbjct: 65  GHD--ADAVPPE---ATVVVSTAIKETNPELVRARGRGQEVIHRS-QALALAARG----- 113

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++AV G  GK++ +  + +     G    F IG                     + +
Sbjct: 114 -RSMVAVAGAHGKTTTSGMLAEALTELGWDPSFAIG--------------------GVVR 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           AL   +  G   V V  +    D+  L+         TN+  DH+D + T++A+  A   
Sbjct: 153 ALGSGAHLGAGQVLVAEADES-DRSFLNY-APAVEIVTNVEPDHLDTYGTREAFEEA-FL 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------------GYQGKFIH 278
            F   L      I  A D  +  + + A   G RV++               G     + 
Sbjct: 210 DFSRRLIAGGLLIACAQDPGALRLARAAAGEGRRVVTYGSLSPAELPDQDLVGLAHVELE 269

Query: 279 LKKVCAIHNKQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +++  A   + ++T+    +   +       +PGE    +A  A    + +G     +  
Sbjct: 270 VEEHPAQGTRSRLTLWTTPTSHDEPVSLELSVPGEHVALDAAAAWACGVELGAQPQAMAR 329

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG 391
            L        RFE  G    G R+  DYAH    ++ +    R +     GR++++F   
Sbjct: 330 ALGAFGGTKRRFEDRGEVG-GVRVVDDYAHHPTEIQALATAAREVAQARGGRLLILFQPH 388

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHGIPGFIEKGNRIE 447
                         AL LAD+ +VT   P  E     P      +   +PG     +R+E
Sbjct: 389 LFSRTQAFAERFGQALSLADLVVVTAVYPAREAQEDFPGVSGRTVSEHVPGGRYLADRVE 448

Query: 448 AIRTAIEMLNKQDVLVVAGKGH--ETVHIVTN 477
           A R+  +   + D+L+  G G   E   ++ +
Sbjct: 449 AARSLADAAQRGDLLLTVGAGDVTEMGQVILD 480


>gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 445

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 169/422 (40%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A++ G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGPVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T          
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
               P+  A+        GV    +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 148 ----PVLEAEWQREGKKAGV--WVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K ++F      +   ++ ADD + + + +       +  S+ ++  F   ++ 
Sbjct: 200 LLDYAHTKAKIFRG----DGVQVLNADDVFCRAMKRAGRE--VKWFSLEHEADFWLERET 253

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +    +  I+ +        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 254 GRLKQGDEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      + ++  D P      +IR ++        +     EA++TA       D++
Sbjct: 363 DALKDKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|283768879|ref|ZP_06341790.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219]
 gi|283104665|gb|EFC06038.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219]
          Length = 458

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 159/439 (36%), Gaps = 72/439 (16%)

Query: 67  GAEAIVVSSAYSLQD------FSATIRSNTPI--------LVVDNTRKFLSLFASRLYGK 112
           GA  ++   A ++ +      ++A I  + P         + + N +  L+      +  
Sbjct: 53  GATILIGQKAENITNKYKLVVYTAAIHPDNPEYQQAMKLNIPLMNRKDLLAEVMEHYH-- 110

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIY 169
              N +A+ GT GK++  + +  I   +     ++ PT +I +       N     S  +
Sbjct: 111 ---NSIAIAGTHGKTTTTAMLSYIFLAA-----ELDPTISIGAHFKKIHGNVRIGHSEAF 162

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           LA+A  Y +S                      ++ +A    N+  DH+D+ +  Q   N+
Sbjct: 163 LAEACEYTNSFLA-------------------LRPLASIILNIEEDHLDFFKDLQDIRNS 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F      E   II++   + +E+++  H    +V+  G     +  K +  + +  
Sbjct: 204 -FHQFVLNTSSEGALIIHSQIDHVEEIVEGYHG---QVIQFGLNKGDLCAKNIQHLRHGG 259

Query: 290 -QVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q  + +  +       P  G+  + NAL A G+ I+ G+    + + L++      RFE
Sbjct: 260 NQFEVWMRSERLGSIELPTGGKHNITNALAAIGVAISFGVPFEAIQQGLKEFEGADRRFE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G   +G  I  DYAH    ++  L   +     R+I+VF                  L
Sbjct: 320 KKGF-YQGAEIVDDYAHHPQEIQATLNMAKDYPHQRLIMVFQPHTYSRTKFLFEEFAEVL 378

Query: 408 DLADIAIVTDDNPRSE-DPEKIRAEIIH-----------GIPGFIEKGNRIEAIRTAIEM 455
              D  ++       E D   I ++++             +  F+E  +         + 
Sbjct: 379 SQVDQVVLAPIYAAREIDDGSISSDLLAKRINELKGNAVSLGSFVEIKD------YLKKQ 432

Query: 456 LNKQDVLVVAGKGHETVHI 474
           L + D+ +  G G+    I
Sbjct: 433 LQEGDLCLTVGAGN-VYEI 450


>gi|227833490|ref|YP_002835197.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184478|ref|ZP_06043899.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|254765993|sp|C3PHF5|MURC_CORA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|227454506|gb|ACP33259.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 496

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 95/432 (21%), Positives = 151/432 (34%), Gaps = 63/432 (14%)

Query: 70  AIVVSSAYSLQD---FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +A   +  P++   +      L A  + G      + + GT GK
Sbjct: 76  VVVTSFAAIPQDNPELTAAREAGIPVIRRSD------LLAELMEGH---RQVLLAGTHGK 126

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S  S      Q++G   SF IG     +                        + G T  
Sbjct: 127 TSTTSMAVSALQQAGLDPSFAIGGQLNRAGTN---------------------AHGGTGD 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +  A +   D   L          TN+  DH+DY  T ++Y+      F + + +    +
Sbjct: 166 AFVAEADESDASLLRY-SPYVAVITNIEPDHLDYFGTAESYYQV-FDDFADRVVEGGYLV 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------- 297
           +  +DA +    +RA   G +VL  G          V       + T+S  G        
Sbjct: 224 VCLEDAQAATTGERAAQRGIQVLGYGAGSAVDEDSAVPLAAEILEETVSAAGAHIRVRLA 283

Query: 298 ------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 ++  +   +PG   V N+  A       G D A +   L     V  RFE+ G+
Sbjct: 284 LPGQAPQELSYDLHVPGHHMVLNSAAALLAGALAGGDPAELAAGLTDFTGVRRRFEYRGS 343

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIA 406
             RG R++ DYAH    +  +L   R          R+I  F         K       A
Sbjct: 344 E-RGIRVFDDYAHHPTEVSAVLNAARAKADAEGEGARVIACFQPHLYSRTMKFDAEFAQA 402

Query: 407 LDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD A+V D     E P +      I  ++   +P  I + +  EA    I +    D
Sbjct: 403 LALADAAVVLDIYGAREQPVEGITSRIITDKMPEDMP-VIFEPDFSEAAGDVISLAQSGD 461

Query: 461 VLVVAGKGHETV 472
           +++  G G  T 
Sbjct: 462 IVLTIGAGTVTY 473


>gi|254393145|ref|ZP_05008303.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444045|ref|ZP_08218779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706790|gb|EDY52602.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 470

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 145/432 (33%), Gaps = 44/432 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A  +VVSSA    +      +   + VV  +   L+   + L
Sbjct: 54  GATVHIGH--AAGHLADDASCVVVSSAIRADNPELVRAAELSVPVVHRS-DALASLMTGL 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   +AV GT GK++  S +       G   S+ IG        A           
Sbjct: 111 ------RAIAVAGTHGKTTTTSMLAVALGALGLDPSYAIG-----GDLAGPGSNAHHGDG 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +  A +  S +                              N+  DH   + +    + 
Sbjct: 160 DIFVAEADESDRSFQKY-----------------APEVAIVLNVELDHHANYASMDEIYE 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVGY-QGKFIHLKKVCAIH 286
           +   +F   +      +I AD   + E+  R       R+++ G  +G  + +++V    
Sbjct: 203 S-FEIFAGRIVPGGTLVIAADQPGAVELTSRLRERTELRIVTYGESEGADVRVQRVTPNG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +V + ++G+   F   +PG    +NA+ A     A+GI    +   L     V  R 
Sbjct: 262 LTSEVAVVLDGRPLTFTVSVPGRHYAHNAVAALAAGAALGIPVDELATALGAYTGVGRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
           +  G    G ++   YAH    +   L+ +R   +  R++VVF         +       
Sbjct: 322 QLKGEAG-GVQVIDSYAHHPTEMTADLEAMRAAAADSRLLVVFQPHLFSRTQELGTEMGQ 380

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           AL LAD ++V D  P  EDP      E I                  E   T   M    
Sbjct: 381 ALALADASLVLDIYPAREDPVPGVTSELIITAARAAGADVTPAHAMREVPETVAGMAKPG 440

Query: 460 DVLVVAGKGHET 471
           D+++  G G  T
Sbjct: 441 DLVLTMGAGDVT 452


>gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 821

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/418 (16%), Positives = 142/418 (33%), Gaps = 38/418 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAG--WIFVAIVGNKEDGHL 58
           MK++   +   P ++N   I  +Q ++  I  +  DSR+  +    +F+AI G + DGH 
Sbjct: 1   MKIE---FSSLPTILNG-EICQLQ-KDYTIENIFIDSRNAVSNIKNLFIAIKGERHDGHN 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI    + G    ++     +  +             +N+   L   A         N++
Sbjct: 56  FIADLYSNGIRNFIIDEEIKVDKYPEA-----NFFKTENSINALQALAGYKRKNFKGNLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK+ V  ++ ++          I    ++    +        P+ L     Y  
Sbjct: 111 GITGSNGKTIVKEWLAKL----------IESVYSVYRSPRSYNSQVGVPLSLWHLNHY-- 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q    +    S  G  +     IK   G +TNLG  H +   + +   + K +LF++  
Sbjct: 159 -QDYAIIEAGISKMGEMEKLEAIIKPKIGIYTNLGTAHDEGFPSLEEKAHQKAQLFKD-- 215

Query: 239 PKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              S  I   D          + +         S        +  +    +N   + I  
Sbjct: 216 --SSTIIFCKDFPEISNALHSLPKLEEKEFIGWSF-EDNTSNYFVETEGRNNGTAIRIPF 272

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E +   F  P      + N      L +  G+   ++   L  +  +  R E      + 
Sbjct: 273 EEQFHIFQVPFQDYASLENITHCLLLLLHEGLPIKVIQNTLNDIKSLNMRLE--TKKGKN 330

Query: 356 GRIYVDYAHTSNSL---EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               VD ++ ++ +     +    +     + I++     +       +  ++A  +A
Sbjct: 331 STYLVDDSYNNDLVGLDTALQFFSQQKQFQKRILILSDLLETGLSSEVLYQQLADRIA 388


>gi|219683260|ref|YP_002469643.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620910|gb|ACL29067.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium animalis
           subsp. lactis AD011]
          Length = 525

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 132/430 (30%), Gaps = 56/430 (13%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSV 129
               +  +S+ I+ + P +V              + A  + GKH    + V G  GK++ 
Sbjct: 95  QDAQVVVYSSAIKPDNPEIVAAVANGAQLVHRSDILALLMNGKH---AVTVAGAHGKTTT 151

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  I   +G             S+A    +  P    L    +   +  V       
Sbjct: 152 SSLLAHILMHAGTGE------LADPSYAIGGSIQGPDGTTLDGGHAGKGTVLVAEADESD 205

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S                  TN   DH+D++ T++ Y  A     + +       I+  D
Sbjct: 206 GSFA-------KYHPDIEIITNAEADHLDHYHTEENYHAAFA---DHVTHARRAVIMCVD 255

Query: 250 DAYSKEVMKR-AHNAGCRVLSVGYQGKF------------IHLKKVCAIHNKQQVTISVE 296
           DA +  V++  A     +V++                   I  +   A    +   I + 
Sbjct: 256 DAGALAVLRSLAPEDARKVIAYSTHTADELGDLNGATFVHIASEHESANSGTENFVIDIP 315

Query: 297 ------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                          +PG     NA  A    + +G+D+               RF+  G
Sbjct: 316 AALVGADVALPVSLRIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFLGANRRFQIRG 375

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T S    +  DYAH    +  +LK   R     ++ V+F                 AL L
Sbjct: 376 TVSD-ITVVDDYAHHPTEITALLKAARRRYPDSQLHVLFQPHLFSRTQFFAQEFADALSL 434

Query: 410 ADIAIVTDDNPRSED--------PEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459
           AD  IVT   P  E         P  I  +  HG   +  +   +   A +         
Sbjct: 435 ADDVIVTGIFPAREKQSDFPQVTPNTIV-DNAHGDGSYEIEAVDDMSLAAQMLAMRAQPG 493

Query: 460 DVLVVAGKGH 469
           DV+   G G 
Sbjct: 494 DVIFTVGAGD 503


>gi|183602425|ref|ZP_02963791.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|183218344|gb|EDT88989.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis HN019]
          Length = 511

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 132/430 (30%), Gaps = 56/430 (13%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSV 129
               +  +S+ I+ + P +V              + A  + GKH    + V G  GK++ 
Sbjct: 81  QDAQVVVYSSAIKPDNPEIVAAVANGAQLVHRSDILALLMNGKH---AVTVAGAHGKTTT 137

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  I   +G             S+A    +  P    L    +   +  V       
Sbjct: 138 SSLLAHILMHAGTGE------LADPSYAIGGSIQGPDGTTLDGGHAGKGTVLVAEADESD 191

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S                  TN   DH+D++ T++ Y  A     + +       I+  D
Sbjct: 192 GSFA-------KYHPDIEIITNAEADHLDHYHTEENYHAAFA---DHVTHARRAVIMCVD 241

Query: 250 DAYSKEVMKR-AHNAGCRVLSVGYQGKF------------IHLKKVCAIHNKQQVTISVE 296
           DA +  V++  A     +V++                   I  +   A    +   I + 
Sbjct: 242 DAGALAVLRSLAPEDARKVIAYSTHTADELGDLNGATFVHIASEHESANSGTENFVIDIP 301

Query: 297 ------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                          +PG     NA  A    + +G+D+               RF+  G
Sbjct: 302 AALVGADVALPVSLRIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFLGANRRFQIRG 361

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T S    +  DYAH    +  +LK   R     ++ V+F                 AL L
Sbjct: 362 TVSD-ITVVDDYAHHPTEITALLKAARRRYPDSQLHVLFQPHLFSRTQFFAQEFADALSL 420

Query: 410 ADIAIVTDDNPRSED--------PEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459
           AD  IVT   P  E         P  I  +  HG   +  +   +   A +         
Sbjct: 421 ADDVIVTGIFPAREKQSDFPQVTPNTIV-DNAHGDGSYEIEAVDDMSLAAQMLAMRAQPG 479

Query: 460 DVLVVAGKGH 469
           DV+   G G 
Sbjct: 480 DVIFTVGAGD 489


>gi|189502202|ref|YP_001957919.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497643|gb|ACE06190.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 450

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 131/367 (35%), Gaps = 48/367 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR       +++A+TG++GKS+       + +  GL+    G   T           
Sbjct: 94  EFASRYTK---ASLIAITGSNGKSTTTHLAYHLLKAGGLNVGIAGNIGT----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT- 222
                        +  +   +  +E SS  L+   L   K       N+  DH+D +   
Sbjct: 140 --------SFARKVLLEEHNYYVLELSSFQLEH--LQTFKADIACILNITPDHLDRYDNQ 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y  AK R+   ++ KE   I   DD   +E + +      ++  +       H   V
Sbjct: 190 LNNYIAAKFRILRNMI-KEGYFIYNQDDTNIREYLVKQTTNLPQLYPISLTQSTHHGAYV 248

Query: 283 CAIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              H      +   G +++F       PL G+  +YN + A  +   +G+  A +L+ L 
Sbjct: 249 ENNH------LHFVGDNYNFQLPTQTLPLLGKHNIYNTMAAISIASLLGLSYASILDGLR 302

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               +P R E++  N      Y D   T+  +E     + + TS  I +    G D+   
Sbjct: 303 TFKGLPHRMEWI-ANVNQVSFYNDSKATN--VESAAVALESFTSPIIWI--AGGYDKGND 357

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              +   +   +  +  +  DN      + I            E     EA+  A  +  
Sbjct: 358 YNVLKPIVKNSVKALICLGKDN------QTICKAFKESNIPIYETQVMQEAVSLAYTLAK 411

Query: 458 KQDVLVV 464
            QD++++
Sbjct: 412 PQDIVLL 418


>gi|145220553|ref|YP_001131262.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189029018|sp|A4SH01|MURC_PROVI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145206717|gb|ABP37760.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 469

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 152/432 (35%), Gaps = 54/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           GH    Q  A   + +V SSA   +D    +A +++  P++  D   + L        G 
Sbjct: 57  GHQ-ASQVEA--CDVVVYSSAVKPEDNVEIAAAMQAGIPVVKRD---EMLGELMRYKSG- 109

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                + V GT GK++  + V  +   +G S   +     IS + + + +       + +
Sbjct: 110 -----ICVAGTHGKTTTTAMVATMLIEAGESPTVM--IGGISDYLKGSTVVGSGKYMVIE 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +                      +        +L  +H+D + T +    A   
Sbjct: 163 ADEYDRAF-------------------LKLTPTIAVLNSLEAEHMDTYGTLEDLKKA-FV 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   +P     I  AD    + ++    N  C    +  +   +    +   + +   T
Sbjct: 203 AFANKVPFYGRVICCADWPEIRGIIGSL-NRLCTTFGID-EPADVSATDIVMANGRTTFT 260

Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G+ +      +PG   V NAL A    + +G+D A ++  L     +  RF+    
Sbjct: 261 VQAFGEVYPGVSIAVPGRHNVQNALAAFATGLELGLDPARLVHGLGCYSGMRRRFQIKYD 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N RG  +  DYAH  + ++  LK  R    S RI+ VF         +       AL  A
Sbjct: 321 NGRGLLVVDDYAHHPSEVKATLKAARNGWPSARIVAVFQPHLFSRTREFASEYGWALSRA 380

Query: 411 DIAIVTDDNPRSEDPEK---IRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNK--- 458
           D+  ++   P  E  E    + A ++ G          +   +  E  R  +E  +    
Sbjct: 381 DMVYISSIYPSREKEEDFPGVDAGMVAGAVTKAGGKHVLYVSDSGELKRLLLEEASAAGP 440

Query: 459 -QDVLVVAGKGH 469
              +L+  G G 
Sbjct: 441 RGTILLFMGAGD 452


>gi|257066693|ref|YP_003152949.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
 gi|256798573|gb|ACV29228.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
          Length = 439

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 130/356 (36%), Gaps = 44/356 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+A TGT+GK+S  S +  I   SG  +  +G                        
Sbjct: 95  PEAKIIATTGTNGKTSTTSMISHILNESGRKAISVGNIG-------------------EG 135

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +        S E SS  L  H +   K      TN+  DHID+H +   Y N+K+ 
Sbjct: 136 ILWQMYENPSAIFSCELSSFQL--HDVSTYKPHIACITNITEDHIDWHGSFDDYINSKLN 193

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +  +        +I  +D     ++    +   +V     + +        A      + 
Sbjct: 194 ICRKQ-DSGDFLVINHEDP---ILVDHKADFRAKVYEFSSKEEVDR----GAYLKGSSIF 245

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +GK+   +      + G     N + A   C   G+    ++   +    +  R EF
Sbjct: 246 FKDQGKNIKLMDVDDLSIIGRHNYENLMAAILACFIYGVSIEDIIRGSKSFKSIEHRLEF 305

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T+ RG R+Y D   T+  ++  +K I++      IV+   G D++    P + +    
Sbjct: 306 V-TDIRGIRVYNDSKGTN--VDSSVKAIQSFDKP--IVIIAGGYDKNIDYSPYIKEFKKH 360

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + I+       +  +K+ +        + +  +  +A++ + + L + D+ ++
Sbjct: 361 GKLMVII------GQTTDKLASLCEAYKVNYKKAKDMEDAVKISFDNLEEGDIFLL 410


>gi|322389010|ref|ZP_08062580.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
 gi|321144315|gb|EFX39723.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
          Length = 449

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 153/418 (36%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + +       L D    +    P +   N    K L            A  
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEDFAVMVKNPGIPYSNPMVEKALEKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G     +S             
Sbjct: 109 ISD---APIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFPASQVAQTATEK---- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                           + +E SS  L    ++         TNL   HIDYH + + Y  
Sbjct: 162 --------------DVLVMELSSFQLM--GIEAFHPEIAVITNLMPTHIDYHGSFENYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  L + +  K+   ++  +   +KE+   A     RVL          ++KV   + +
Sbjct: 206 AKWNLQKNMTEKD-VIVLNFNQDLAKEL---ATKTKARVLPFST------IEKVDGAYLE 255

Query: 289 QQVTISVEGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             + +  +G+         +PG   V NAL    +    G+++ ++ E L     V  R 
Sbjct: 256 DGL-LKFKGEAVMRADELGVPGSHNVENALATIAVAKVRGVENEVIKETLSAFGGVKHRL 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++V    +G + Y D   T+  +    K +        +++   G DR      ++  IA
Sbjct: 315 QYVD-EIQGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPHIA 370

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L ++ I+ +  PR +     RA    G+  +++  +  +A + A ++ +  DV+++
Sbjct: 371 G-LKEMVILGESAPRVK-----RAADKAGV-SYVDATDVADAAKKAFDLASPGDVVLL 421


>gi|99080524|ref|YP_612678.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
 gi|122984382|sp|Q1GIV0|MURC_SILST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|99036804|gb|ABF63416.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
          Length = 469

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 109/304 (35%), Gaps = 28/304 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + VEA       +RL          TN+  +H+++        +     F   LP   
Sbjct: 161 EWMVVEADESDGTFNRLPAT---IAVVTNIDPEHMEHWGDFDRLRDGFYE-FVSNLPFYG 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGK 298
            A+   D A  + ++ R  +   RV++ G+  +   ++ V   +        +    EG+
Sbjct: 217 LAVCCTDHAEVQALVGRITDR--RVVTYGFNAQA-DVRAVNLTYKGGVAHFDILLQAEGQ 273

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             +    P+PG+  V NAL A  +C  +G+    +   L     V  RF  VG    G  
Sbjct: 274 KIEGCTLPMPGDHNVSNALSAVAVCRHLGMKREEIRTALAAFGGVNRRFTKVG-EVDGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I  DY H    +  +LK  R    T   GR+I V                    + AD+ 
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQAIGTEGEGRVIAVHQPHRYSRLSNLFDDFCACFNDADVV 392

Query: 414 IVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVV 464
            + +     EDP     R +++ G+     +  R  AI       R   E     D++V 
Sbjct: 393 AIAEVFAAGEDPIEGASRDDLVAGLIRHGHRHAR--AILNEDDLLRLVREQTRPGDMVVC 450

Query: 465 AGKG 468
            G G
Sbjct: 451 LGAG 454


>gi|326803773|ref|YP_004321591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651338|gb|AEA01521.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 462

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 131/351 (37%), Gaps = 36/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S + +I Q +   + +      I   A        S   L   L
Sbjct: 115 AEVIGITGSNGKTTTTSLLGEILQGAKELTGKTEVAGNIGIPALTASQGLSSQDRLVLEL 174

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 ++  +    +  +L   H+DYH + + Y  AK R+ 
Sbjct: 175 SSFQLMG-----------------IETFRPHIAAIIDLYPTHLDYHGSIENYLAAKWRIT 217

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +   P +   + Y  +   ++  + +       +    +    + +K   +    +  + 
Sbjct: 218 KNQGPDDYLLLNYDQEILWQKAKESSAQIIPISIESELEKGAWYNEKEGTLMWGSETVLK 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         LPG+  V NALVA  +   +G+ +A +     + H V  R +FV    +
Sbjct: 278 RED------LFLPGKHNVQNALVALAIAKLLGVSNASIQTACSQFHGVKHRIQFVD-QIK 330

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             R Y D   T+N  E  +  +R+     + +    G DR  G + ++ ++    A +A+
Sbjct: 331 ERRFYNDSKATNN--EASITALRSFKEPLVWI--AGGLDRGNGVKELLKELGQVHALVAM 386

Query: 415 VTDDNPRSEDPEK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E  +K I      GI       N  EA + A  +    DV+++
Sbjct: 387 -------GETQDKFIDLANKAGISQISVAKNIEEATQAAYRLSQPGDVILL 430


>gi|206895846|ref|YP_002247446.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738463|gb|ACI17541.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 433

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 156/399 (39%), Gaps = 42/399 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
             SSD R    G IF A  G   D    IP+ +   A+ I+               + + 
Sbjct: 22  NFSSDDRWFMDGDIFFAFTGAHFDARTLIPE-LKNKAKLIITEKE----------ATGSN 70

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++   + R+    F       +P ++L +TGT GKS++A ++  +           G   
Sbjct: 71  VIYRPDARQIYKKFIKAGAKVYPLHVLGITGTKGKSTIAWWLSSLL--------GFGYMG 122

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           T+   A+D +   P+    A AL     + G  H  VE SS GL + RL  + L    +T
Sbjct: 123 TLGIRAKDVKFVLPTTTTGADALFNTYRRTGEDHWVVELSSIGLAEDRLP-LPLEGLVWT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
               +H+DYH+T  AYF AK + F  L  K + A++       + V +         L  
Sbjct: 182 TFEPEHMDYHKTTYAYFLAKKKAFSYL-KKGTFALL------GQNVPQADIGTPYLTLRY 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G  G F  L +      +Q+V I           P+PG+   ++A+              
Sbjct: 235 GDTGNFYILDRREY-EWEQEVKIYTPQGPSVVHIPMPGKVFAHDAVGTVAAAFL------ 287

Query: 331 LVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
                LE +   VP R   V  N  G  + +D+AHT  S++  L+ +        +V+ G
Sbjct: 288 WKGTKLEGEFPSVPVRMNHVIIN--GIEMVIDFAHTPESIDACLQTVAQRWGNDFVVIHG 345

Query: 390 CGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSED 424
             G   Q K   + K+        A   I + D  +SE+
Sbjct: 346 ATGYEPQNKSYEIIKVINRYGIPGAASIIKSLDQRQSEE 384


>gi|222153421|ref|YP_002562598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           uberis 0140J]
 gi|254766059|sp|B9DUV7|MURD_STRU0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222114234|emb|CAR42820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           uberis 0140J]
          Length = 453

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 152/428 (35%), Gaps = 63/428 (14%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---- 103
           DG  F         + +G + +  S    L D    +    P +   N    K LS    
Sbjct: 39  DGKAFEENPAAQSLLEEGIKVVCGSHPLELLDEDFAVMVKNPGIPYQNPMVEKALSKGIP 98

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       I+A+TG++GK++  + +  +    G S+   G     +S   
Sbjct: 99  VLTEVELAYLISE---APIIAITGSNGKTTTTTMIADVLNHGGKSALLSGNIGFPASEV- 154

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                             +++     +++E SS  L    +          TNL   H+D
Sbjct: 155 -----------------AMTASQDDILTMELSSFQLM--GIKDFHPHIALITNLMPTHLD 195

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH +  AY  AK  + +  +  +   I+ A+   +KE+ ++   +     S         
Sbjct: 196 YHGSFDAYIQAKWNI-QNNMTADDVLILNAEQDQTKELAQKTQASLVYFSS--------- 245

Query: 279 LKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            K+      ++   +  +G+         +PG   V NAL    +    GI +  + E L
Sbjct: 246 -KEKVEGAYQEDGKLFYKGEYIMDAQSLGVPGLHNVENALATIAVAKLSGISNQAIAETL 304

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                V  R + +GT       + + + ++N L    K +    + ++I++   G DR  
Sbjct: 305 SSFGGVKHRLQKLGTIKD--VAFYNDSKSTNIL-ACQKALSGFDNNKVILI-AGGLDRGN 360

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++  I        I+       E  EK++        G++E  +  +A R A E  
Sbjct: 361 AFDTLIPDI--KGLKKMILL-----GESAEKMKEAAERAGVGYLEAKDVADATRIAFEQA 413

Query: 457 NKQDVLVV 464
              D++++
Sbjct: 414 QPGDIILL 421


>gi|253564350|ref|ZP_04841807.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_2_5]
 gi|251948126|gb|EES88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_2_5]
 gi|301161369|emb|CBW20909.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis 638R]
          Length = 444

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 139/384 (36%), Gaps = 37/384 (9%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPLILKLREQGTPIISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+    G                            ++ +   +  +E SS  LD   +  
Sbjct: 129 LNVGLAGNIG-------------------KSLALQVAEEKHDYYVIELSSFQLDN--MYN 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y NAK R+ +    +++      D    +E+ K  
Sbjct: 168 FRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     S   +   I   +   +   + +  ++E +       L G+  +YN+L A  
Sbjct: 228 IRAHLYPFSAIKEEGSIAYVEDHEVVITEPIAFNMEQE----QLALTGQHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V    RG     D   T+  +      ++++T
Sbjct: 284 SANLAGITKEDIRKALSDFQGVEHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           +    V+   G D+      I   +    + +  +   N   E   +    +  G+P   
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEELVREKCSALVYLGLHN---EKLHEFFDRL--GLPVAE 393

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            +    +A+  A ++  K + +++
Sbjct: 394 VQTGMKDAVEAAYKLAKKGETVLL 417


>gi|265764983|ref|ZP_06093258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_16]
 gi|263254367|gb|EEZ25801.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_16]
          Length = 444

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 139/384 (36%), Gaps = 37/384 (9%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPLILKLREQGTPIISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+    G                            ++ +   +  +E SS  LD   +  
Sbjct: 129 LNVGLAGNIG-------------------KSLALQVAEEKHDYYVIELSSFQLDN--MYN 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y NAK R+ +    +++      D    +E+ K  
Sbjct: 168 FRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     S   +   I   +   +   + +  ++E +       L G+  +YN+L A  
Sbjct: 228 IRAHLYPFSAIKEEGSIAYVEDHEVVITEPIAFNMEQE----QLALTGQHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V    RG     D   T+  +      ++++T
Sbjct: 284 SANLAGITKEDIRKALSDFQGVEHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           +    V+   G D+      I   +    + +  +   N   E   +    +  G+P   
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEELVREKCSALVYLGLHN---EKLHEFFDRL--GLPVAE 393

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            +    +A+  A ++  K + +++
Sbjct: 394 VQTGMKDAVEAAYKLAKKGETVLL 417


>gi|145220114|ref|YP_001130823.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206278|gb|ABP37321.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 476

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 122/355 (34%), Gaps = 37/355 (10%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VV +A S   ++    +     ++ + +      L    L GK+   ++A  GT GK++
Sbjct: 67  VVVGNAVSRGNEELEYALNEKMELVAMPD------LVRRELIGKNTSIVVA--GTHGKTT 118

Query: 129 VASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
             S V  + +  GL    +  G         + +                 S +G     
Sbjct: 119 TTSIVAWLLESGGLRPGFLVGGIPENFGIGCRPSGR---------------SDEGFFVSE 163

Query: 187 VEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +         R   +  +       N+  DH D   + +    +  RL   L+P     
Sbjct: 164 GDEYDTAFFDKRSKFMLYRPDIAIINNIEFDHADIFSSLEEIKRS-FRLLVNLIPSNGAL 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDF 302
           I+  DD  + EV  +A    CRV + G   G     + +    N     +  +G  +  F
Sbjct: 223 IVNGDDPVAMEVSSKA---LCRVETFGLTDGCDWTAQNIRVEENGSSFDLYYKGGFERRF 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G + + N L +  +    G+   +  E L +      R E VGT      +  D+
Sbjct: 280 NAPLFGSYNILNTLASIAVATLSGMTLDMTAEGLREFLRPKRRMETVGTYEGNITVIEDF 339

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIV 415
           AH   ++ + L+ I+      RII  F    +                 ADI ++
Sbjct: 340 AHHPTAIRVTLEAIKERWPERRIITCFEARSNTTTRNIFQKELAECFGPADIVVL 394


>gi|330994422|ref|ZP_08318347.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
 gi|329758422|gb|EGG74941.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
          Length = 482

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/433 (20%), Positives = 142/433 (32%), Gaps = 60/433 (13%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A   G A+ +V S+A    +          I VV        L   R      
Sbjct: 59  GHD----AANLGNAQVVVTSTAVQRDNPEVVAARARLIPVVRRAEMLAELMRLRWS---- 110

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S V  + + + L    I     I ++  + R+ +   +      
Sbjct: 111 ---VAVGGTHGKTTTTSLVAAVLEAAKLDPTVING-GIIEAYGTNTRMGSGDWM------ 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RL  +       TN+  +H+D+  T++A   A    F
Sbjct: 161 -----------VVEADESDGSFLRLPSV---ITVVTNMDPEHLDHWGTEEA-MQAAYDQF 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A++  D    ++++ R  +          Q   +  +KV          + 
Sbjct: 206 VSNIPFYGFAVLCIDHPAVQQMIPRLSDHRIITYGFSPQAD-VRAEKVITDKLGATFEVV 264

Query: 295 V-------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +         +   F  P+ G   V NAL A  +   + ID A +         V  RF 
Sbjct: 265 ITNRNRNRSRRAGPFRLPMLGHHNVQNALAAIAVGTEMEIDDATIRSAFAAFRGVKRRFT 324

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G    G  I  DY H    +  +LK  R   +G +I V                   +
Sbjct: 325 RTGETG-GITIIDDYGHHPVEIAAVLKAARQAGAGNVIAVMQPHRYSRLKSLFNEFCTCM 383

Query: 408 DLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNR-----------IEAIRTAIEM 455
           + A   I+ D     E P E I  + +  + G  E+G+R            E I     +
Sbjct: 384 NDAGTVIIADVYAAGESPIEGIDRDAL--VEGLRERGHRSVVPLPGPEHLAEMIN---AI 438

Query: 456 LNKQDVLVVAGKG 468
               D +V  G G
Sbjct: 439 ARPGDFVVCLGAG 451


>gi|238503760|ref|XP_002383112.1| UDP-N-acetylmuramate--L-alanine ligase, putative [Aspergillus
           flavus NRRL3357]
 gi|220690583|gb|EED46932.1| UDP-N-acetylmuramate--L-alanine ligase, putative [Aspergillus
           flavus NRRL3357]
          Length = 497

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 140/418 (33%), Gaps = 51/418 (12%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V S+A   +  +       +  I V+  +    SL             +A++G+ G
Sbjct: 85  AKLVVASTAATKNKTNVEVDAARDRRIPVIHRSEMLASLMRHH-------KSIAISGSHG 137

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  S V  + +  GLS   I   + ++ +  +  + +   +                 
Sbjct: 138 KSTTTSMVAGMLEAGGLSPTTI-SGAVVTQYGSNAHMGSGHWM----------------- 179

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA        RL  +       TN+  DHI ++ TQ+    A    F   +P    A+
Sbjct: 180 VVEADESDGTMVRLPAL---ISVVTNIDSDHITFYGTQEK-TRATFAQFVRNVPFYGLAV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------ 299
           +  DD   ++++    +       V  +   +  + V          +SV  +       
Sbjct: 236 LCIDDPGVRKILPEVQDRNIVTYGVS-EDADVRAENVKYNPQDSTFVLSVRDRRDGTRRV 294

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               +  + G   + NAL    + + +GI+   +   L        R+  VG  + G +I
Sbjct: 295 VGSIVLSVLGLHNLQNALATTAIALELGIELESIRYALGSFQGTNRRYIHVG-EANGIQI 353

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTD 417
             D+      ++      +   + R+I V+      R+          A + +   I+  
Sbjct: 354 IDDFGTHPAEIKATQTMAKQAGARRVIAVYQPTVVVRNVEAWLEEYPAAFEESAHIIIGQ 413

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAG 466
            +    DP     E    +  ++    R +AI              +  + D +V  G
Sbjct: 414 ADGVEVDPVP-AGEARETLVQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMG 470


>gi|255536698|ref|YP_003097069.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 813

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 134/363 (36%), Gaps = 30/363 (8%)

Query: 30  INEVSSDSRHI-QA-GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +  ++ DSR+I       F+AI   K  G  +I  AI +G   ++       +       
Sbjct: 24  VTGMAYDSRNIFSPLNTAFLAINTAKNSGEKYITSAIEKGISVVISQHRIESE------- 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           ++   ++V+++ KF+   A   + +   +  + +TG++GK+ V  ++ Q           
Sbjct: 77  TDVTWIIVEDSLKFIQKLAKYHFAQFTLKTTIGITGSNGKTIVKEWLYQSL--------- 127

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                T+ S     +            L   +   +    V  S     +   D  K   
Sbjct: 128 FDEFITVKS----PKSFNSQLGLPLSLLKVSARDEIGIFEVGISKPSEMERLADIFKPQI 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  T++G  H    + Q+     K++LF +        +   D+     ++   +++  +
Sbjct: 184 GVLTHIGPAHESNFENQKQLIEEKIKLFSD----SDVILFNGDNLLVHSLITERYSSK-K 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++S G++    +   + +   +  ++I   G++F+       E  + NAL    +   +G
Sbjct: 239 LISYGFE--THNDIFIKSSPKEGDLSIVYFGEEFNLPAQRRDEATLNNALCVIAVLKVLG 296

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             + ++ E +  L  V  R E V        I   Y    +SL++  + I         +
Sbjct: 297 FSTDIIREKINMLKPVEMRLESVKGLRNNLIINDYYNLDLDSLKIAFQFINEYNKPAKTL 356

Query: 387 VFG 389
           V  
Sbjct: 357 VLT 359


>gi|294666416|ref|ZP_06731660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292603785|gb|EFF47192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 463

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 119/352 (33%), Gaps = 23/352 (6%)

Query: 63  AIAQGA-EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR------LYGKHPE 115
           A+  GA +A +       +          P L V                   +      
Sbjct: 2   AVRGGAFKARLSPRGVRSRPSVVLFNRLVPALNVPQGGGDQHRGGGWRASPPGMQRDRAT 61

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +LA+TG++GK+SV + +  I Q +G         +T+ +   +       P+ +   L+
Sbjct: 62  RVLALTGSNGKTSVKALLLSILQEAGRVDG-----TTVYATPGNRNNEIGLPLAV---LA 113

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V    + A   G   +  +  +       N+   H++   +       K  ++ 
Sbjct: 114 APDDADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYA 173

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQG-KFIHLKKVCAIHNKQQV 291
            L P +  A+I ADDA+     ++  +      RVL  G Q    I  +++       Q 
Sbjct: 174 AL-PADGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQF 232

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+     +     PLPG   V NAL A GL +  GI   ++   L +   V GR +   T
Sbjct: 233 TLVTPQGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARPVAGR-QIAQT 291

Query: 352 NSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
              G  +  D Y     S      +      G   +V G   +       + 
Sbjct: 292 LPNGAVLIDDSYNANPGS-LDAAIDALAAAPGEGWLVLGDMRELGAEGVALH 342


>gi|304440571|ref|ZP_07400457.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304370947|gb|EFM24567.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 510

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 131/361 (36%), Gaps = 36/361 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK+SV  F   +              +T    ++       S   +   L+
Sbjct: 162 KVIGITGSFGKTSVKFFTSTMLDEKFRVQNTPSSYNTPMGLSKVINNELDSSREIF--LA 219

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L           A   G        ++   G  T +G  H+  ++T +     K  L E
Sbjct: 220 EL----------GAYKPGEIHEVASLVQPDIGVITAIGPTHMQMYKTIENIMKTKYELIE 269

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +L  +   AI   D+ Y +E+  +      R  +  +     + K +         T+  
Sbjct: 270 DL-DENGTAIFNYDNKYVRELADKTTKKTIRYGTKDFMKLDYYAKDIEVSERGSTFTLVS 328

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + K   +    L GE  V N L +  + + +G+    V + +EK+  V  R   +    +
Sbjct: 329 KEKGSIECTTKLLGEHSVQNLLASVAIGMELGMSLEEVKDRIEKIESVEHRLNLI--EGQ 386

Query: 355 GGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL 409
           GG I +D A  SN +     LK +     G+ I+V       G+ ++ +   +GK    +
Sbjct: 387 GGVIVIDDAFNSNPVGFRAALKVLSQFKDGKKIIVTPGMVELGEMEEEENYKVGKEIAKV 446

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQDVL 462
            D AI+     R+E        I  G+        RI       +A     ++   +DV+
Sbjct: 447 CDYAILVGIK-RTEP-------IRRGLLDSKFDEGRIISVRSLNDATSELGKITAPRDVV 498

Query: 463 V 463
           +
Sbjct: 499 L 499


>gi|302875394|ref|YP_003844027.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307688992|ref|ZP_07631438.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578251|gb|ADL52263.1| Mur ligase middle domain protein [Clostridium cellulovorans 743B]
          Length = 471

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 111/340 (32%), Gaps = 25/340 (7%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            L D          +++V N  K           +     + V G+SGK++    +  I 
Sbjct: 72  DLIDLKNLSSKGIGVILVKNLNKAYEDIVQLYRKQFDIPFVQVIGSSGKTTTKEMLGSIL 131

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +            +T+ SF  +    +     L   L   +      +     S G+   
Sbjct: 132 RT---------KLNTLVSFE-NLNSPSGVAYNL---LKLTAKHQAAVLETGMRSKGVISR 178

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               I+      T + R H+    + +    AK   F   L  ES  II  DD   K++ 
Sbjct: 179 STSIIQPDYVIVTCIHRAHLVTVGSLENIIKAKSE-FIGFLSPESLVIINGDDENCKKL- 236

Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                   +VL+ G      I  K++     K          + D      G + V NAL
Sbjct: 237 -PLDQYQGKVLTFGMSKSCDIWAKEIQYDDFKMHFKACTRNLEIDCTINTIGIYNVLNAL 295

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  L + +G     + E L +   +  R + V  N     I   +    +S   +++ I
Sbjct: 296 AAIILSLNLGFSKQEIQEGLLQFKPMYNRLQVVKRNKNFCIINDTFNANPDSTIALVEEI 355

Query: 377 RTITSGRIIVV----FGCGGDRD----QGKRPIMGKIALD 408
           +    G+ I++    F     +D    +     +GK A  
Sbjct: 356 QNFAQGKPIILVLGDFENPNYQDTEYPESVHYEVGKKAAS 395


>gi|289522905|ref|ZP_06439759.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503929|gb|EFD25093.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 485

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 127/370 (34%), Gaps = 37/370 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK++ +S +  +   +GL      PT  I     D                  
Sbjct: 122 IGVAGAHGKTTTSSMIATVLDAAGLD-----PTIAIGGEVSDIGG--------------- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  + H     S         +         TN+  DH++++ T Q+  +A +R F   
Sbjct: 162 -NARLGHGDYMVSELDESDGSFELFSCYIPVVTNIDWDHVNFYPTFQSVQDAFVR-FLSK 219

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +   II  +D   + V  +     C     G Q  +  +    ++      T+   G
Sbjct: 220 RKDDGKIIICGEDTGCQSVAGKF-APQCITYGWGMQWDWGAVGVNHSVGGGVSFTVVKRG 278

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +  +    + GE  V NAL A  +C  +GI    +   L K      R + +G      
Sbjct: 279 AEIGEINLRVSGEHNVLNALAACAVCDLLGISFNTIRHALHKFKGTKRRLQCLGVCDD-I 337

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             Y DY H    ++  L  +R    S R++V+F                 AL  AD+  +
Sbjct: 338 YFYDDYGHHPREVQATLDTLRNIFPSRRLVVIFQPHRYSRTKAMYRKFAEALMKADLVYI 397

Query: 416 TDDNPRSEDPE-KIRAEIIH-------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
               P  E  E  I +++I        G    +   +  E +    E +   D+L+  G 
Sbjct: 398 LPVYPADEKLELSISSDLIVDSLTSECGHKNCLSLSD-DEVVSKVAENILPGDILLTLGA 456

Query: 468 GHETVHIVTN 477
           G   V+I  N
Sbjct: 457 G--NVNIYGN 464


>gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
 gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
          Length = 821

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 142/404 (35%), Gaps = 31/404 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     Q  +  ++ + +DSR +      +F A+     DGH +I +      
Sbjct: 5   IKEIARVIGAKTNQLLDDTVSLLLTDSRRLSFPEQSLFFALKTKTNDGHRYIQELYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS      +       +   L+V +T + L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSDMLPEFES----MKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+      + F I            +  +  S + +  ++  +S +    +   
Sbjct: 121 VKEFLYQLL----HNEFNI----------VRSPRSYNSQLGVPLSVWQMSEKNTLGIFEA 166

Query: 189 ASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL   I    G  TN+G  H +   +       K+ LF      +  AIIY
Sbjct: 167 GISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCMEKLTLF-----NDCEAIIY 221

Query: 248 -ADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD +    ++ A  +      S       + ++ +     +  +  ++ G +     P
Sbjct: 222 DGDDLFIANCIESACLSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +  + N +    + + +   S   +     L  V  R +     +    I   Y   
Sbjct: 282 FTDDASIENVIHCMAVMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSD 341

Query: 366 SNSLEMILKNIRTITSGRII---VVFGCGGDRDQGKRPIMGKIA 406
            NSL++ L   ++   G+ +   ++           + +  K+A
Sbjct: 342 INSLDIALDFQQSRRVGKQLKSTLILSDILQSGTLPKSLYKKVA 385


>gi|148259085|ref|YP_001233212.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium cryptum JF-5]
 gi|326402236|ref|YP_004282317.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium multivorum
           AIU301]
 gi|166222949|sp|A5FUL1|MURC_ACICJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146400766|gb|ABQ29293.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium cryptum JF-5]
 gi|325049097|dbj|BAJ79435.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium multivorum
           AIU301]
          Length = 479

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 146/431 (33%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A   G A+ +VVS+A    +          I VV    + L       +    
Sbjct: 59  GHD----AANLGNAQVVVVSTAVPRDNPEVQAARKRMIPVVRRA-EMLGELMRLRW---- 109

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  + + +GL    I     I+++  + RL            
Sbjct: 110 --SVAIGGTHGKTTTTSLVAAVLEGAGLDPTVING-GIINAYGTNARLG----------- 155

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G   + VEA        RL  +       TN+  +H+D+  + +A   A  R F
Sbjct: 156 ------GGDWMVVEADESDGSFLRLPAV---IAVVTNMDPEHLDHWGSAEA-MEAGYRQF 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A++  D    + ++    +       +  Q   +  +++ +  N     + 
Sbjct: 206 VSNIPFYGFAVLCIDHPGVQRMIPDLSDHRLITYGLSPQAD-VRAERIMSDRNGATFEVR 264

Query: 295 ----VEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               V G++        P+ G   V NAL A  + I + +    +   L     V  RF 
Sbjct: 265 LSERVAGRERVLAPMRLPMLGNHNVQNALAAIAIGIEMEVPEVDLRAALASFRGVKRRFT 324

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G  + G  +  DY H    +  +L+  R   +  +I V                   +
Sbjct: 325 KTGEVA-GITVIDDYGHHPVEIAAVLRAARQAGARDVIAVVQPHRYTRLATLFEDFCTCM 383

Query: 408 DLADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKG--------NRIEAIRTAIEMLN 457
           + A   IV D  P  E+  P   R  ++ G+     K         +  E I     M  
Sbjct: 384 NDAGKVIVADVYPAGEEPIPGIDRDALVEGLRARGHKSVVSLGSPDHLAEMIN---AMAR 440

Query: 458 KQDVLVVAGKG 468
             D +V  G G
Sbjct: 441 AGDYVVCLGAG 451


>gi|317474535|ref|ZP_07933809.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316909216|gb|EFV30896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 444

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 145/385 (37%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPLILKLKEKGIPIISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+   +G    I +                     ++ +   +  +E SS  LD   +  
Sbjct: 129 LN---VGLAGNIGN----------------SLALQVAMEKHDYYVIELSSFQLDN--MYK 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y +AK R+ +   P+++      D    +E+ K  
Sbjct: 168 FRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     +   +   I   +   +   + +  ++E ++      L G   +YN+L A  
Sbjct: 228 LKAHPYPFAAVKEDGAIAYVEDGEVEINEPIAFNMEQEE----LALHGTHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V T  RG +   D   T+  +      ++++T
Sbjct: 284 SANLAGIKKEDIRKALSDFKGVEHRLEKVAT-VRGIQFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +    V+   G D+      I   +    + +  +   N      EK+       G+P  
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEELVRTKCSALIYLGLHN------EKLHEFFDRFGLPVA 392

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +A+  A ++  K + +++
Sbjct: 393 DVQTGMKDAVEAAFQLAKKGETVLL 417


>gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B]
 gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B]
          Length = 821

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 142/404 (35%), Gaps = 31/404 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     Q  +  ++ + +DSR +      +F A+     DGH +I +      
Sbjct: 5   IKEIARVIGAKTNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS      +       +   L+V +T + L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSDMLPEFES----MKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+      + F I            +  +  S + +  ++  +S +    +   
Sbjct: 121 VKEFLYQLL----HNEFNI----------VRSPRSYNSQLGVPLSVWQMSEKNTLGIFEA 166

Query: 189 ASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL   I    G  TN+G  H +   +       K+ LF      +  AIIY
Sbjct: 167 GISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCMEKLTLF-----NDCEAIIY 221

Query: 248 -ADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD +    ++ A  +      S       + ++ +     +  +  ++ G +     P
Sbjct: 222 DGDDLFIANCIESACLSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +  + N +    + + +   S   +     L  V  R +     +    I   Y   
Sbjct: 282 FTDDASIENVIHCMAVMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSD 341

Query: 366 SNSLEMILKNIRTITSGRII---VVFGCGGDRDQGKRPIMGKIA 406
            NSL++ L   ++   G+ +   ++           + +  K+A
Sbjct: 342 INSLDIALDFQQSRRVGKQLKSTLILSDILQSGTLPKSLYKKVA 385


>gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13]
 gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13]
          Length = 821

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 142/404 (35%), Gaps = 31/404 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     Q  +  ++ + +DSR +      +F A+     DGH +I +      
Sbjct: 5   IKEIARVIGAKTNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS      +       +   L+V +T + L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSDMLPEFES----MKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+      + F I            +  +  S + +  ++  +S +    +   
Sbjct: 121 VKEFLYQLL----HNEFNI----------VRSPRSYNSQLGVPLSVWQMSEKNTLGIFEA 166

Query: 189 ASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL   I    G  TN+G  H +   +       K+ LF      +  AIIY
Sbjct: 167 GISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCMEKLTLF-----NDCEAIIY 221

Query: 248 -ADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD +    ++ A  +      S       + ++ +     +  +  ++ G +     P
Sbjct: 222 DGDDLFIANCIESACLSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +  + N +    + + +   S   +     L  V  R +     +    I   Y   
Sbjct: 282 FTDDASIENVIHCMAVMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSD 341

Query: 366 SNSLEMILKNIRTITSGRII---VVFGCGGDRDQGKRPIMGKIA 406
            NSL++ L   ++   G+ +   ++           + +  K+A
Sbjct: 342 INSLDIALDFQQSRRVGKQLKSTLILSDILQSGTLPKSLYKKVA 385


>gi|254368603|ref|ZP_04984619.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157121506|gb|EDO65697.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 451

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 128/362 (35%), Gaps = 32/362 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT GK++ +S +  +  +    S  I     +                +  A S +
Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFI-----VGGV-------------VKYADSNI 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EA            +       TN+  DH+  +      +   +  F + 
Sbjct: 148 QVNGTDKLVIEADESDAS---FLFLSPQVVIITNIDLDHMATYNNS---YQTLLENFTDF 201

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           + KES   IY   DD   ++++ + + +   V S G+     + +     I       I 
Sbjct: 202 VSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIR 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN 352
            +G D  F   LPG + V NA      C+ +G     +   L K+  V  RF+      +
Sbjct: 262 YKGDDLSFKLQLPGRYNVQNATACIITCLDLGFKYEDIRNALIKVTGVARRFDLYTKVIS 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                +  DY H    +   +  +R    + +II VF                 AL LAD
Sbjct: 322 GHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVFQPHRYTRNRDLIKDWPKALSLAD 381

Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+       E         +I+ G+ G++        I    ++ N+  V+++ G G 
Sbjct: 382 QLILLPTYSADEQIIKGAESQDIVKGLSGYLLADGFDHVIYFLEKLANENTVILIQGAGD 441

Query: 470 ET 471
            T
Sbjct: 442 VT 443


>gi|150009966|ref|YP_001304709.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Parabacteroides distasonis ATCC
           8503]
 gi|255012771|ref|ZP_05284897.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. 2_1_7]
 gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503]
          Length = 821

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 142/404 (35%), Gaps = 31/404 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     Q  +  ++ + +DSR +      +F A+     DGH +I +      
Sbjct: 5   IKEIARVIGAKTNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS      +       +   L+V +T + L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSDMLPEFES----MKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+      + F I            +  +  S + +  ++  +S +    +   
Sbjct: 121 VKEFLYQLL----HNEFNI----------VRSPRSYNSQLGVPLSVWQMSEKNTLGIFEA 166

Query: 189 ASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL   I    G  TN+G  H +   +       K+ LF      +  AIIY
Sbjct: 167 GISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCMEKLTLF-----NDCEAIIY 221

Query: 248 -ADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD +    ++ A  +      S       + ++ +     +  +  ++ G +     P
Sbjct: 222 DGDDLFIANCIESACLSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +  + N +    + + +   S   +     L  V  R +     +    I   Y   
Sbjct: 282 FTDDASIENVIHCMAVMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSD 341

Query: 366 SNSLEMILKNIRTITSGRII---VVFGCGGDRDQGKRPIMGKIA 406
            NSL++ L   ++   G+ +   ++           + +  K+A
Sbjct: 342 INSLDIALDFQQSRRVGKQLKSTLILSDILQSGTLPKSLYKKVA 385


>gi|226360229|ref|YP_002778007.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus opacus B4]
 gi|254766018|sp|C1AU54|MURC_RHOOB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226238714|dbj|BAH49062.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus opacus B4]
          Length = 503

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 100/474 (21%), Positives = 150/474 (31%), Gaps = 97/474 (20%)

Query: 65  AQGAEAIVVSSAYSLQDFS----------ATIRSNTPILVVDNTRKFL-----SLFASRL 109
           A+GA+  +   A +L              A I  + P LV    R        ++ AS +
Sbjct: 51  ARGAQVRIGHDAGALDLLPGGPTVVVTTHAAIPKDNPELVEAARRGIPVILRPAVLASLM 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPI 168
            G      L V+GT GK+S  S +    Q  G    F +G     +     +        
Sbjct: 111 QGH---RTLLVSGTHGKTSTTSMLVVALQHCGFDPSFAVGGELNEAGTNAHHGSG----- 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                        V     + S   L Q+            TN+  DH+DY  + +AY  
Sbjct: 163 ------------DVFVAEADESDGSLLQY-----DPNVVVVTNVEADHLDYFGSPEAYIQ 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFI-------- 277
                F   L      +   DD  S  + +R       G RVL  G              
Sbjct: 206 V-FDDFAARLSHGGLLVACLDDPGSAALAQRVAARGLPGVRVLGYGSAEDADGAFAPIDG 264

Query: 278 -----HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 L    A      +   + G+         +PG     NAL A       G D  
Sbjct: 265 VEVGARLLSFEARDVGGVLQFQLAGEQAPRTIRMNVPGRHMALNALAALLAAREAGADVD 324

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-------------- 376
            +LE +     V  RF+F G    G R++ DYAH    +  +L                 
Sbjct: 325 EILEGIAGFGGVHRRFQFTG-REHGVRVFDDYAHHPTEVRAVLGAAADLVSQPHEADRRE 383

Query: 377 --RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
               + SG++IVVF                 ALDLAD  +V D     E+P       + 
Sbjct: 384 SEEPVRSGKVIVVFQPHLYSRTATFAEEFGHALDLADEVMVLDVYGAREEP-------LP 436

Query: 435 GIPGFIEK----------GNRIEAIRTAIEMLNKQDVLVVAGKGHETV---HIV 475
           G+ G +             +  +A R    + +  DV++  G G  T+    I+
Sbjct: 437 GVSGALVALSVSKPVHYQPDLSQAPRQVAALASPGDVVITMGAGDVTMLGNQIL 490


>gi|237654083|ref|YP_002890397.1| UDP-N-acetylmuramate--L-alanine ligase [Thauera sp. MZ1T]
 gi|237625330|gb|ACR02020.1| UDP-N-acetylmuramate/alanine ligase [Thauera sp. MZ1T]
          Length = 471

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 133/414 (32%), Gaps = 57/414 (13%)

Query: 83  SATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S  ++++ P +V    R         + A  +  KH    +A+ GT GK++  S V  I 
Sbjct: 71  STAVKADNPEVVAARERHIPVVPRAQMLAELMRFKHG---IAIAGTHGKTTTTSLVASIL 127

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G     I PT  I                L  A +        ++  EA        
Sbjct: 128 AEGG-----IDPTFVIGGR-------------LNAAGANARLGTGDYLVAEADESDASFL 169

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            L     +    TN+  DH+D +             F   LP    A++  DD   +E++
Sbjct: 170 LL---NPVISVVTNIDADHMDTYGHDFGRVKQAFVDFLHRLPFYGVAVLCEDDPNVREII 226

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT-ISVEGK--DFDFLFPLPGEFQVY 313
            +      R    G+ +   I  + V A   + +   + V G          LPG   V 
Sbjct: 227 PQVAKQIVR---YGFSETANIRAENVRAEGGRMRFDCVRVNGTTSRLSIELNLPGLHNVL 283

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---------NSRGGRIYVDYAH 364
           NAL A  +   + +  A +++ L + + V  RF+  G           +    +  DY H
Sbjct: 284 NALAAIAVATEVQVPDAAIVKALAEFNGVGRRFQRYGEVALHDQDGDEAGRFTLVDDYGH 343

Query: 365 TSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +   +   R    GR +V+ F                  L   D  ++ +     E
Sbjct: 344 HPVEMAATIAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVKVLSTVDALLLAEVYAAGE 403

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKG 468
            P  I A     +   I     +E +         R  +      DV++  G G
Sbjct: 404 TP--IVAADGRSLARAIRVAGTVEPVFVEEIADMPRMILSAARDGDVVITMGAG 455


>gi|260557901|ref|ZP_05830114.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ATCC
           19606]
 gi|260408692|gb|EEX01997.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ATCC
           19606]
          Length = 482

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/432 (19%), Positives = 147/432 (34%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I   A  +VVS+A   ++          I +V    + L       +G    
Sbjct: 73  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRIPIVRRA-EMLGELMRYRHG---- 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +          + PT  I                +  AL 
Sbjct: 125 --IAVAGTHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAALG 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                       +AS           ++ +A   TN+  DH+D ++            F 
Sbjct: 170 ESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFL 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DDA  +E++ R       V++ G+ +   I    V     +   T+ 
Sbjct: 222 HNLPFYGLAVVCGDDANIREILPRVGRP---VITYGFNEDNDIRAIDVEQDGMRSHFTVL 278

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G   
Sbjct: 279 RKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFE 338

Query: 354 RG---GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            G    ++  DY H    +E  +K  R +    R++++F                  L  
Sbjct: 339 LGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCYDDFIEVLSQ 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE------------MLN 457
            D  ++ +  P  E P  I       +   I    ++E I   I+            +L 
Sbjct: 399 VDQLLLLEVYPAGEKP--IVGADSRTLARSIRLRGQVEPI--LIDPVEGNLQNIMQNVLQ 454

Query: 458 KQDVLVVAGKGH 469
             D+L+  G G+
Sbjct: 455 PNDLLLTQGAGN 466


>gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 813

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 143/389 (36%), Gaps = 30/389 (7%)

Query: 28  RKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
             I+ +  DSR I  +   IF A  G ++DGHL+I  A  +G    ++      +     
Sbjct: 23  VSIHYLLYDSRKIAHEKLGIFFAFTG-RQDGHLYIQDAYNKGVRNFILEKDTEQE----V 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +  IL V N+   L   A     +    ++ +TG++GK+ V  ++ Q+         
Sbjct: 78  QMPDANILWVANSWTTLQSLAQHNRSRFQGPVIGITGSNGKTIVKEWLFQLMS------- 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKL 204
                         +  +  S + +A +L  LS+Q    +     SH  +  RL+  IK 
Sbjct: 131 -------PEYKIYRSPKSYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKP 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+G  H     ++      K+RLF     K++  +IY   A   E ++  +   
Sbjct: 184 TFGVLTNIGIAHQQGFASKLEKTEEKLRLF-----KDAETLIY--PAKYLEAVQIPYKPR 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                     +            +  VT+   GK F    P      + NA+    + + 
Sbjct: 237 KLSWGEEEDNQLEVYSIRKPEDGQTYVTLYYGGKTFGISVPFTDSAAMENAITCVAVMLR 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGR 383
            G D+AL+ E +  L  V  R E     +    I   Y++   SL++ L  + +      
Sbjct: 297 FGYDTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIALDFLNQQHQHTN 356

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            I++              + K+   +AD 
Sbjct: 357 SILILSDIPGVTLTDEKNLNKLKRLVADR 385


>gi|329890779|ref|ZP_08269122.1| mur ligase middle domain protein [Brevundimonas diminuta ATCC
           11568]
 gi|328846080|gb|EGF95644.1| mur ligase middle domain protein [Brevundimonas diminuta ATCC
           11568]
          Length = 493

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 137/414 (33%), Gaps = 44/414 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGK 126
           VVS    +   +  +    P +        L      L +           + V GTSGK
Sbjct: 90  VVSKDQVVV-ATGAVEDTVPDIGAAKRVGALIKTRPQLLSELFNAAPTS--IGVAGTSGK 146

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++   +  I  ++G        T T+ + A           + +  +   + +    V+
Sbjct: 147 STITGMIAWILDQAGR-------TPTVVNGAVMKNFADADHPFASALIGGANDENGLFVA 199

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S G                +N+  DH    ++ +   +    LF   + + + A++
Sbjct: 200 EVDESDGSIARY----DPTVAVVSNISLDH----KSMEELRD----LFGGFVGRATTAVL 247

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFP 305
             D+  +  + +          ++G +   +    +  +         V G+        
Sbjct: 248 NLDNPETAALAQTLETGKAITFALGEEEADLSAHDLQPLPTGMTFEFRVRGEAARAARLN 307

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL A G   A+G+     +  LE    +  R E VG    G  +  D+AH 
Sbjct: 308 VPGAHNVANALAALGAVKALGVGMDQAVAALETFSGIRRRLEVVGAR-NGVTVIDDFAHN 366

Query: 366 SNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIV------- 415
            + +   LK +     GR++++F     G  +   +  I G   L   D  ++       
Sbjct: 367 PDKIAATLKTLHAF-DGRLLILFQPHGFGPLKLMQREFIEGFAGLMRHDDVLLMPEPVYY 425

Query: 416 --TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             T D  RS   E I   +            R +     +E+    D +VV G 
Sbjct: 426 GGTTD--RSVGSEDIAVGVRAAGRQAQALATRADCGDRIVEIAQPGDRIVVMGA 477


>gi|160883882|ref|ZP_02064885.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
 gi|237716646|ref|ZP_04547127.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
 gi|237720376|ref|ZP_04550857.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_2_4]
 gi|262405421|ref|ZP_06081971.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_22]
 gi|293370476|ref|ZP_06617029.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CMC 3f]
 gi|294646202|ref|ZP_06723856.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CC 2a]
 gi|294809131|ref|ZP_06767849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298480582|ref|ZP_06998779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           D22]
 gi|156110612|gb|EDO12357.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
 gi|229442629|gb|EEO48420.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
 gi|229450127|gb|EEO55918.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_2_4]
 gi|262356296|gb|EEZ05386.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_22]
 gi|292634468|gb|EFF53004.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CMC 3f]
 gi|292638420|gb|EFF56784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CC 2a]
 gi|294443685|gb|EFG12434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295086278|emb|CBK67801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           xylanisolvens XB1A]
 gi|298273403|gb|EFI14967.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           D22]
          Length = 444

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 139/385 (36%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ PI++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPIILKLKAQGTPVISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+    G                            ++     +  +E SS  LD   +  
Sbjct: 129 LNVGLAGNIG-------------------KSLALQVAEDYHDYYIIELSSFQLDN--MYN 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y +AK R+ +   P ++      D    +E+ K  
Sbjct: 168 FRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     +   +   I   +   +   + +  ++E ++      L G+  +YN+L A  
Sbjct: 228 LKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNMEQEE----LALTGQHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V    RG     D   T+  +      ++++T
Sbjct: 284 SANLAGIAKENIRKALSDFKGVEHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +    V+   G D+      I   +    + +  +   N      EK+       G+P  
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEDLVREKCSALVYLGLHN------EKLHEFFDRFGLPVA 392

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +A+  A ++  K + +++
Sbjct: 393 DVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|189464537|ref|ZP_03013322.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
 gi|189438327|gb|EDV07312.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
          Length = 444

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 128/362 (35%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                  + AL   + Q   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 -------SLALQVATDQH-DYYVIELSSFQLDN--MYKFRANIAVLMNITPDHLDRYDHC 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P+++      D    +E+ K    A     S   +   I   + 
Sbjct: 190 MQNYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGLRAHLYPFSAVKEDGAIAYVED 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +   + +  ++E +       L G   +YN+L A       GI+   +   L     V
Sbjct: 250 GEVEINEPIAFNMEQE----KLALQGTHNLYNSLAAGISANLAGIEKEYIRRALSDFKGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V T      I    A   NS    L++++T       V+   G D+      I 
Sbjct: 306 EHRLEKVATVRGVEFINDSKATNVNSCWYALQSMKT-----KTVLILGGKDKGNDYTEIE 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    + +  +   N   E        +  G+P    +    +A+  A  +  K + +
Sbjct: 361 DLVREKCSALVYLGLHN---EKLHDFFDRM--GLPVADVQTGMKDAVDAAFRLAKKGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|226320606|ref|ZP_03796166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
 gi|226234025|gb|EEH32746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
          Length = 339

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 117/328 (35%), Gaps = 23/328 (7%)

Query: 27  ERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ER ++  S DSR I+       ++ A  GNK DG  F+   I  G +    S  +  +  
Sbjct: 25  ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECI 84

Query: 83  S-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      L+  N  K L   AS L  K     +A+TG++GK++    +  I  +  
Sbjct: 85  KYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSK-- 142

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               +     T  +   D              L    ++      V  S  G        
Sbjct: 143 ----KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQI 191

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+   H+   +  QA    K ++  + +      ++   + Y   + KRA 
Sbjct: 192 LKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFVVNEMNDYCVYLEKRAK 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A   V  V +  + + +K    +  K       +G  F++   L G   ++NA+    L
Sbjct: 249 IANPNVKIVYFDFENLSIKSFSFLEGKFSFDFVYKG--FEYSILLLGRHNIFNAIGCINL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            + +G+    + E L +     GR E +
Sbjct: 307 ALFLGMREKEIKEGLIETAFQKGRAEIL 334


>gi|153956316|ref|YP_001397081.1| cyanophycin synthetase [Clostridium kluyveri DSM 555]
 gi|219856632|ref|YP_002473754.1| hypothetical protein CKR_3289 [Clostridium kluyveri NBRC 12016]
 gi|146349174|gb|EDK35710.1| CphA [Clostridium kluyveri DSM 555]
 gi|219570356|dbj|BAH08340.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 874

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 138/359 (38%), Gaps = 33/359 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I  ++G   +++G T+T   +  +  +          A + L ++ V    +E + 
Sbjct: 494 LIAHILSKAG---YKVGMTTTGGIYIDNKCICRGDTTGYLSAKTVLENEEVEAAVLETAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L          TN+  DH+  +   + +     K  L  E + K+   ++ AD
Sbjct: 551 GGIIKKGLAYDLADVAVITNITEDHLGMNGIDSLEDLAYVKA-LVGEAVRKKGYVVLNAD 609

Query: 250 DAYSKEVMKRAHNAGCRV------------LSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           D  SK ++ R  +                 + +G  G ++  + +  +  K ++   +  
Sbjct: 610 DLVSKNIINRMKSNIIMFSKDKNNLILRGNIDMGGYGVYMD-ESIMYLEKKNEIIPIISV 668

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNS 353
           +D          + + NA+ A    I + I+ +++ E L+  +      PGRF     N 
Sbjct: 669 EDIKISLGGKLVYNIENAMAACAAAIGLNINYSVIKEGLKSFYCDVSFNPGRFNIYDLN- 727

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G ++ +DY H     + ++   +     R+I + G  GDR+      +G+IA +  D  
Sbjct: 728 -GVKVVLDYGHNVEGYKSVINAAKNFNYKRLIGIIGVPGDRNDESVEKIGRIAGESFDYI 786

Query: 414 IVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +D + R      I + +  GI              N   A+  AI    + D +++
Sbjct: 787 YIKEDKDKRGRKSGTIASILKKGIIKTGFSTKKVETILNEKMALEKAINTAKEGDFIII 845


>gi|325954319|ref|YP_004237979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
 gi|323436937|gb|ADX67401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
          Length = 443

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 137/391 (35%), Gaps = 52/391 (13%)

Query: 83  SATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           S  I  N P+++    ++        FASR        I+A+TG++GK++  S +  I +
Sbjct: 69  SPGIPENVPLIMALKAKQIEVISEIEFASRFTE---SKIIAITGSNGKTTTTSLMYHIMK 125

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQH 197
            +GL     G                       K+ + L ++    +  +E SS  LD  
Sbjct: 126 EAGLDVGLCGNIG--------------------KSFAQLVAEDPHEYYVIEISSFQLDDI 165

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           R    K       N+  DH+D ++     Y ++K R+ E    KE       DD    E+
Sbjct: 166 R--FFKPYIAIILNITPDHLDRYENNFDKYAHSKFRITENQTDKEYFVY-NVDDEKINEL 222

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVY 313
           +K       +  S   + K     K  A  N++   I      F        L G+  V 
Sbjct: 223 IKELKIKANKT-SFSMKDK-----KQKAYANEKIFEIKDNDNSFLMPIADLGLIGKHNVS 276

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L AA     + I   ++   L     V  R E V     G     D   T+  +    
Sbjct: 277 NSLAAATAANILKIRKDVIKRSLSDFKSVEHRLENV-LKIGGIEFINDSKATN--VNATY 333

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             + ++ +  I +V   G D+      +M  +   +  I  +  DN       KI     
Sbjct: 334 FALESMKNPVIWIV--GGTDKGNDYSELMPFVKKKVKAIVCLGVDN------HKIIEAFS 385

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    E     +A+R A     K D +++
Sbjct: 386 GVVEKITETKTMKDAVRAAYMYGEKGDTVLL 416


>gi|323144085|ref|ZP_08078727.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
 gi|322416139|gb|EFY06831.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
          Length = 479

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 148/440 (33%), Gaps = 57/440 (12%)

Query: 44  WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
            +F+        GH    + I  GA  +VVSSA    +          I VV    + L 
Sbjct: 67  DVFI--------GHR--AENIE-GASVVVVSSAIHQGNPEVNAAIEKRIPVVRRA-EMLG 114

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRL 162
                 YG      +AV GT GK++  S +  I   +G   +F IG     +        
Sbjct: 115 ELMRYRYG------IAVAGTHGKTTTTSLISSIFAEAGLDPTFVIGGLLNSAG----TNA 164

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S  YL   ++       + +                ++ +    TN+  DH++ +  
Sbjct: 165 RLGSSRYL---IAEADESDASFL---------------HLQPMMTVVTNIEADHLETYGG 206

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKK 281
             +        F   LP    A++  DD   +++M R   A   V++ G  +G  + +  
Sbjct: 207 DFSKLEDTFIEFLHNLPFYGVAVVCNDDPVIRKLMPRIGRA---VVTYGTIEGSDLQVVD 263

Query: 282 VCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                     T +            LPG     NA  A  + +  GID   +   L+   
Sbjct: 264 YEQKEAGSTFTVLRKNASPLKIELNLPGIHMAKNAAAAIAVAMEEGIDDDSIKRALKNFA 323

Query: 341 VVPGRFEFVG--TNSRGGR-IYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQ 396
            V  RF+  G   + +G   +  DY H  + ++  +    R   + R+++VF        
Sbjct: 324 GVGRRFQRYGKLMSPQGIVSLVDDYGHHPSEVQATIDAVRRGWPNRRLVMVFQPHRYTRT 383

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEI-IHGIPGFIEKGNRIEAI 449
                     L   D  ++ +  P  EDP +      +   I   G        +  E  
Sbjct: 384 RDLYEDFIRVLQQVDELVLLEVYPAGEDPIQGADGRHLCRSIRAKGKLEPHFARDVAEVP 443

Query: 450 RTAIEMLNKQDVLVVAGKGH 469
                ++ + D+++  G G+
Sbjct: 444 EILDHIVKENDIVLTQGAGN 463


>gi|240128807|ref|ZP_04741468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268687189|ref|ZP_06154051.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268627473|gb|EEZ59873.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 445

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 164/424 (38%), Gaps = 54/424 (12%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T          
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT---------- 147

Query: 163 TTPSPIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                       + L  +G       +E SS  L+    + ++  A +  N+  DH+D +
Sbjct: 148 --------PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVMNISEDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y + K  +F      +   ++ ADD + + + +       +  S+ ++  F   +
Sbjct: 198 DDLLDYAHTKAEIFRG----DGVQVLNADDVFCRAMKRAGRE--VKRFSLEHEADFWLER 251

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +    +  IS +        PL G     N + A  LC A+G+    +LEH++   
Sbjct: 252 GTGCLKQGNEDLISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P
Sbjct: 306 GLPHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTP 360

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +      + ++  D P      +IR ++        +     EA++TA       D
Sbjct: 361 LRDALKDKAKGVFLIGVDAP------QIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGD 414

Query: 461 VLVV 464
           ++++
Sbjct: 415 IVLL 418


>gi|23009655|ref|ZP_00050624.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 252

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 16/256 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P  +   +   +    R I   S D+R ++ G +F AI G   DGH F+  A+ +GA A
Sbjct: 8   IPSALEAATGGRLIGEPRAIRGASIDTRSLEPGDLFFAIRGEARDGHDFVQAALDKGAGA 67

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VV+++ +     A      P    D     +         +    I+AVTG+ GK+   
Sbjct: 68  AVVAASRADDCAGAGPVLAVPEGGEDPVLDAMRRLGLAARARSRAAIVAVTGSVGKTGTK 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             ++ +    G +   +               +  +   +   L+ +       V     
Sbjct: 128 EALRHVLSAQGATHASV--------------ASYNNHWGVPLTLARMPEAAQFGVFEIGM 173

Query: 191 SHG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +HG         ++      T +   HI++ ++  A  +AK  +F  L P    A+I  D
Sbjct: 174 NHGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKP-GGVAVINRD 232

Query: 250 DAYSKEVMKRAHNAGC 265
           +A  + ++  A  +  
Sbjct: 233 NANFERLLAHAQASKA 248


>gi|260172405|ref|ZP_05758817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           D2]
 gi|315920701|ref|ZP_07916941.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694576|gb|EFS31411.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 444

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 139/385 (36%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ PI++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPIILKLKAQGTPVISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+    G                            ++     +  +E SS  LD   +  
Sbjct: 129 LNVGLAGNIG-------------------KSLALQVAEDYHDYYIIELSSFQLDN--MYN 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y +AK R+ +   P ++      D    +E+ K  
Sbjct: 168 FRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     +   +   I   +   +   + +  ++E ++      L G+  +YN+L A  
Sbjct: 228 LKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNMEQEE----LALTGQHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V    RG     D   T+  +      ++++T
Sbjct: 284 SANLAGIAKENIRKALSDFKGVEHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +    V+   G D+      I   +    + +  +   N      EK+       G+P  
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEDLVREKCSALVYLGLHN------EKLHEFFDRFGLPVA 392

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +A+  A ++  K + +++
Sbjct: 393 DVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|258511259|ref|YP_003184693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477985|gb|ACV58304.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 458

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 92/391 (23%), Positives = 147/391 (37%), Gaps = 56/391 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           Q F A +     ++V D         AS    +    I A+TG++GK++  + V ++ + 
Sbjct: 91  QPFIAELIKAAHVIVTD------VEIASWFERRP---IYAITGSNGKTTTTTLVGEMLKA 141

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           SG      G   T                     +  +  Q    + +E SS  LD    
Sbjct: 142 SGYHPIVAGNIGT--------------------PVCDVVDQPGDLLVLEVSSFQLD--GT 179

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                  G+  N    H+DYH T +AY  AK +LF    P +  AI+  D A  ++   R
Sbjct: 180 HTFHPRGGALLNFYPAHLDYHGTYEAYQQAKWKLFANQTPDD-VAILNWDQALVRD---R 235

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-----LPGEFQVYN 314
           A     RV     +G          +       ++V G++   + P     LPG   + N
Sbjct: 236 AGELAARVRGFSLEGAPFD----EGVGVIDGALVAVRGRERTPILPVDQVALPGRHNLQN 291

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  AA L +A G     V   L     V  R EFV   S G R Y D   T+   +   +
Sbjct: 292 AAAAAALALAAGASVEAVARVLATFQGVEHRLEFVREVS-GVRYYNDSKATNP--DAARQ 348

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII- 433
            +R+   G + +    G DR     P++  I+  +    ++       E  EK+R  +  
Sbjct: 349 ALRSFERGVVWI--AGGLDRGISFDPLLPDISGRVRAAVLL------GETKEKLREVLAR 400

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            G+       +  EA+R A  M    DV+++
Sbjct: 401 AGVSTCAFAASMEEAVREASRMAEPGDVVLL 431


>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella
           patens]
 gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 92/435 (21%), Positives = 162/435 (37%), Gaps = 47/435 (10%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +V+S    +   D +A I++  P          L   A+ L G     + AVTGT+G
Sbjct: 118 ASQLVLSPGVPVTHPDIAAAIQAGVPAF------SELGFAAAALPGNI--KVAAVTGTNG 169

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-LSSQGVTH 184
           KS+V +F  QI + +G+ +F  G   T            P    + + L++       + 
Sbjct: 170 KSTVTTFTSQILRNAGVRTFVGGNLGT------------PLSDGVLQCLAFPAEDPPFSV 217

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VE SS+ L+          A    NL  DH++ H++ +AY + K R+F   +     A
Sbjct: 218 AVVEVSSYQLELP--GSFHPKAAVILNLTPDHLERHKSMEAYGSIKCRVFSR-MEASDVA 274

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II   D   + +   + +   R    G  G  +      AI      T  VE + +    
Sbjct: 275 IIPQSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDARRAIVVVP--TTGVEARLYLSSL 332

Query: 305 PLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              G    +NA  AA L +++  G+ S  +   +  L   P R E V  + +G     D 
Sbjct: 333 QAVGTHNAHNAGTAALLALSLDVGLQSEDIQAAIPHLKAPPHRMEIVHQDDQGVVWVNDS 392

Query: 363 -AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVTD 417
            A   +S  + +++I     G+  VV   G  +       +G      +L      ++  
Sbjct: 393 KATNVDSTSVGIRSIV----GKKAVVLLGGQAKVGVGSGGLGFGVLVESLQSHRAVVL-- 446

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNR--IEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                     I  E+ H              +A++ A  +    D ++++  G  +    
Sbjct: 447 ---FGASGLAIEQELRHAGLSITCTYTELFADAVQLAGSLAQPGDAVLLS-PGCASFDQF 502

Query: 476 TNGEKKMSVDCDIIR 490
            N E +  V  D+ +
Sbjct: 503 KNFEHRGQVFADLAK 517


>gi|149910628|ref|ZP_01899266.1| UDP-N-acetylmuramate--L-alanine ligase [Moritella sp. PE36]
 gi|149806356|gb|EDM66331.1| UDP-N-acetylmuramate--L-alanine ligase [Moritella sp. PE36]
          Length = 485

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 145/417 (34%), Gaps = 48/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A  L +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSTAIDLTNPEIVAAHENRIPVIKRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S  + V  I   +GL    +      S+       T+         ++       + +  
Sbjct: 132 STTALVTGIYHEAGLDPTFVNGGLVKSTGTNAGLGTS------RYLIAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +    A        F   LP    A++ 
Sbjct: 184 -------------LLQPMVAVITNIEADHMDTYGGDFAKLEKTFVDFLHNLPFYGLAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
           ADDA  ++++    + G +V++ G+ +   + +       +K   TI  + + D      
Sbjct: 231 ADDAVIEKLI---PDVGRQVVTYGFAENADVRIIDYVQKGHKSHFTICRKDRDDLRVSLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDY 362
            PG+    NA  A  +    GID   ++  L        RFE +G    G     +  DY
Sbjct: 288 SPGQHNALNATAAVAVATEDGIDDRAIVTALANFAGTGRRFEQLGEFDSGAGNVMLVDDY 347

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H    +++ +   R      R++ VF                  L   D+  + +  P 
Sbjct: 348 GHHPTEVDVTITAARAGWPEKRLVSVFQPHRYTRTRDLYEDFANVLSKVDLLFLLEVYPA 407

Query: 422 SEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E+P        +   I       P F+   + I AI    E L   D+++  G G+
Sbjct: 408 GEEPIPGADSRSLCRSIRQRGNIEPIFVSSPDEIPAILA--EHLQDGDLVLTQGAGN 462


>gi|152967142|ref|YP_001362926.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
 gi|189028996|sp|A6WCX3|MURC_KINRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151361659|gb|ABS04662.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
          Length = 471

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 97/415 (23%), Positives = 145/415 (34%), Gaps = 40/415 (9%)

Query: 67  GA-EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           GA + +VVSSA    +          + V+  +    +L A R         +AV GT G
Sbjct: 76  GAGDTLVVSSAVRATNPELLAARERGVRVLHRSEALAALMAGRAG-------VAVAGTHG 128

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +S +      +G   S+ IG   T          + P                   
Sbjct: 129 KTTTSSMLAVALTAAGLDPSYAIGGELTGGDDGGARDGSGPFV--------------AEA 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              + S              +    TN+  DH+D++ T +A+  A     + L P     
Sbjct: 175 DESDGSFRAY--------APVVDVVTNVEPDHLDHYGTAEAFAAAFEEFVDRLQP-GGLL 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  ADD  S  +   A   G RV + G         +           +   G   +   
Sbjct: 226 VACADDPGSAALAGHARGRGVRVRTYGASATADVRLRDLQPGAAASAVLVDGGVPRELRL 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PGE  V NA  A    + +G D   VLE L +      RFE  G  + G R+  DYAH
Sbjct: 286 AVPGEHNVLNAAAAYCAAVELGADPVAVLEGLARFGGARRRFELKGEAA-GVRVVDDYAH 344

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +E +L+  R     GR++VVF                 AL LAD  +V D     E
Sbjct: 345 HPTEVEALLRAARPVAGGGRVVVVFQPHLVSRTRAFAAEFGRALALADEVVVLDVYVARE 404

Query: 424 --DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
             DPE   A +   +P          +R  A  T    +   D+L+  G G  T 
Sbjct: 405 DPDPEVTGALVADAVPLPAGRVRFLPDRSAAAGTLAATVRAGDLLLTVGAGDVTT 459


>gi|121635446|ref|YP_975691.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis FAM18]
 gi|158513150|sp|A1KVL5|MURD_NEIMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120867152|emb|CAM10919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis FAM18]
          Length = 445

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 165/418 (39%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ ADDA+ + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATKD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIG--KKNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|110639121|ref|YP_679330.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
 gi|122966617|sp|Q11RH6|MURC_CYTH3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110281802|gb|ABG59988.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 466

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 148/416 (35%), Gaps = 39/416 (9%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +P+A   + +  ++ + A                 +   + + L      L        +
Sbjct: 63  VPEAFTKKDSVLVIYTPAIPADHLELNFFRENGYALYKRS-QVLGFLTKEL------KTI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            + GT GK++ +S    I   SG+          +    Q+                 + 
Sbjct: 116 GIAGTHGKTTTSSMAAHIMHESGMPCSAF-----LGGITQNYNTNI-----------LIG 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G     V A +   D+  L  +        N+  DH+D +   Q+++++     ++L 
Sbjct: 160 NHGDGAGWVVAEADEYDRSFLQ-LSPDIAVINNMDPDHLDIYSDVQSFYDSFNEYLKKLK 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297
           P          D        +  +     ++ G        ++ V         +I  + 
Sbjct: 219 PGGIVIRRVDVDV-------QIPSHASLSVTFGESVEADYRIQNVVVEDGGVTFSIDHDF 271

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             ++     +PG   V NA  A       G+    +   L     V  RFE++  N++  
Sbjct: 272 TRWNNIRIEMPGMHNVMNATAAFLAAHFAGVSIDSIKASLRSFGGVKRRFEYIYKNTKLV 331

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    LE +LK +R +  G+ +V VF                 +L L D  ++
Sbjct: 332 YV-DDYAHHPTELEALLKAVRMVFPGKKVVTVFQPHLFSRTRDFMQEFAQSLALTDELLL 390

Query: 416 TDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +  P  E P E I ++ +++ IP   +K    E++ T +E LN  DV++ AG G 
Sbjct: 391 MEIYPARELPIEGITSDVLLNLIPSTNKKVVSKESLLTELEKLN-FDVVITAGAGD 445


>gi|320352820|ref|YP_004194159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121322|gb|ADW16868.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
          Length = 458

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 155/441 (35%), Gaps = 55/441 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH     A   GA+ ++             +  + P+L     +    L   A    G++
Sbjct: 62  GHT---AAFLAGADMVI---------PGPGVPLDLPVLQAARKQGLPVLGELALA-AGQY 108

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AVTG++GK++V S + ++ + SG + F  G   T                     
Sbjct: 109 AVPVIAVTGSNGKTTVTSLIGELLRASGKNPFVGGNIGT-------------------PL 149

Query: 174 LSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           L Y +  QG   V +E SS  LD       +   G   N+  DH+D H + +AY  AK  
Sbjct: 150 LDYFADPQGYDAVVLELSSFQLDLA--GAFRPDIGLLLNISPDHLDRHGSLEAYTLAKQN 207

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
           LF         AI+ ADD  +        N      + G  +G    +     +      
Sbjct: 208 LFRHQ-QLGDRAILGADDPVA---AATPLNPEVGRFTFGRAEGCTARIADGRILLTLMAG 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +S + +       L       NA  A       G + A + E L +    P R   V T
Sbjct: 264 ALSGKTEYVLSGTTLHSSVNQLNAAAAILAVTLAGCEQAGIAEGLRRFVPPPHRMAEVAT 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 I    A    +LE  L    +      +V+   G D+      +   +   +  
Sbjct: 324 IDGVRFINDSKATNIGALEAALAGCES-----PVVLIAGGRDKGSDYSLLREVVGRKVKH 378

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + +V       E    +RA +   +P         +A+R A+      D++++A  G  +
Sbjct: 379 LVLV------GEAAGLMRAALGSLVPTEA-ATTMEDAVRRAMTAAASGDLVLLA-PGCAS 430

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
             + +  +++  V  + + +I
Sbjct: 431 FDMFSGYDERGRVFAECVHQI 451


>gi|194099349|ref|YP_002002449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae NCCP11945]
 gi|226722939|sp|B4RQC7|MURD_NEIG2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193934639|gb|ACF30463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae NCCP11945]
          Length = 445

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 165/424 (38%), Gaps = 54/424 (12%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T          
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT---------- 147

Query: 163 TTPSPIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                       + L  +G       +E SS  L+    + ++  A +  N+  DH+D +
Sbjct: 148 --------PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVMNISEDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y + K ++F      +   ++ ADD + + + +       +  S+ ++  F   +
Sbjct: 198 DDLLDYAHTKAKIFRG----DGVQVLNADDVFCRAMKRAGRE--VKRFSLEHEADFWLER 251

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +    +  IS +        PL G     N + A  LC A+G+    +LEH++   
Sbjct: 252 GTGCLKQGNEDLISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P
Sbjct: 306 GLPHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTP 360

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +      + ++  D P      +IR ++        +     EA++TA       D
Sbjct: 361 LRDALKDKAKGVFLIGVDAP------QIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGD 414

Query: 461 VLVV 464
           ++++
Sbjct: 415 IVLL 418


>gi|153809197|ref|ZP_01961865.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
 gi|149128173|gb|EDM19393.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
          Length = 444

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 142/406 (34%), Gaps = 46/406 (11%)

Query: 70  AIVVSSAYSLQDF---------SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
           AI     +  ++          S  I ++ P+++    +    +      G++    ++ 
Sbjct: 47  AIAWEEGHHTEELILNADEVVKSPGIPNDAPLILKLKAQGTPVISEIEFAGRYTDAKMIC 106

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++  S +  I + +GL+    G                            ++ 
Sbjct: 107 ITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIG-------------------KSLALQVAE 147

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELL 238
               +  +E SS  LD   +   +       N+  DH+D +    Q Y +AK R+ +   
Sbjct: 148 DHHDYYIIELSSFQLDN--MYNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQT 205

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P ++      D     E+ K    A     +   +   I   +   +   + +  ++E +
Sbjct: 206 PDDAFIFWNDDPIIRHELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNMEQE 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +      L G+  +YN+L A       GI    + + L     V  R E V    RG   
Sbjct: 266 E----LALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFRGVEHRLEKV-ARVRGIDF 320

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             D   T+  +      ++++T+    V+   G D+      I   +    + +  +   
Sbjct: 321 INDSKATN--VNSCWYALQSMTTKT--VLILGGKDKGNDYTEIEDLVREKCSALVYLGLH 376

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           N +  D          G+P    +    +A+  A ++  K + +++
Sbjct: 377 NEKLHDFFD-----RFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|288801604|ref|ZP_06407046.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
 gi|288335646|gb|EFC74079.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
          Length = 443

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 129/362 (35%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 94  EFAGRYTN---SKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 --------SLALQVAEDPHEYYIIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDYK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y +AKMR+ +    ++S      D    KE+ K   +A C   S   +   I   + 
Sbjct: 190 FENYADAKMRIIQNQTKEDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEE 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +Q    ++E +D      L G   +YN+L A       GI    + + L     V
Sbjct: 250 GQYTIEQPEPFNMEQED----LSLTGRHNIYNSLAAGIASDISGIKKENIRKSLSDFPGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V   +    I    A   ++    L+++RT T     ++   G D+      I 
Sbjct: 306 EHRLEKVCKVAGVQYINDSKATNVDACWYALESMRTPT-----ILIIGGKDKGNDYNSIK 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A I  +  DN +  D      ++  G+P   +  +  + +    E+    D +
Sbjct: 361 DLVKQKCAGIVYLGADNKKLHDN---FDDL--GLP-IRDTHSMKDCVAACAELAKPGDTV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|15676332|ref|NP_273468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis MC58]
 gi|30316129|sp|Q9K0Y4|MURD_NEIMB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|7225643|gb|AAF40858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis MC58]
 gi|316984929|gb|EFV63885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
 gi|325140935|gb|EGC63442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis CU385]
 gi|325199608|gb|ADY95063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
          Length = 445

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 163/418 (38%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ ADDA+ + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I  +        PL G     N + A  LC AIG+    +LEH++    +P R 
Sbjct: 258 QGNEDLIVTQD------IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   + 
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALV 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|293402021|ref|ZP_06646160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304413|gb|EFE45663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 438

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 144/375 (38%), Gaps = 46/375 (12%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK+++ + + ++ QR G +         I               +   AL+Y  
Sbjct: 107 AITGTNGKTTITTMLYEMLQRKGNAI----VAGNIG--------------FPLSALAYDF 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +   +V++E S+  L    ++          NL  DH+DY  + +AY+ +KMR++E   
Sbjct: 149 EEEEKYVALELSNFQLL--GIETFAPEVSVVCNLAPDHLDYMPSVEAYYESKMRIYENC- 205

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            KE   +   DD     V+  A N  C  +      + + L +         + +  E +
Sbjct: 206 QKEDWFLRNVDDPT---VVAYAKNIPCTTIDFSLTRQDVDLYRKDGKVWLHDLMLFEESR 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                FP+ G++ + NA+VAA +   +G+  A +   +     V  R E++G    G + 
Sbjct: 263 -----FPIVGDYNLSNAMVAACMAYKLGVSLADIQATISSFQPVEHRLEYIGEK-DGVKF 316

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y D   T+     +   + +      I++   G D+      +          IA     
Sbjct: 317 YNDSKATNT--HAVTAALSSFDKN--ILLLAGGHDKGISFLDLKQYDDRVKCCIAF---- 368

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
                   + R +               EA+ TAI      D+++++     +     N 
Sbjct: 369 -------GETREQFKPIFTHVETVETMQEALHTAIAKAQSGDIILLSPACS-SYDQFPNY 420

Query: 479 EKKMSVDCDIIREIL 493
           E + ++  +++R  L
Sbjct: 421 EVRGTLFKEMVRAYL 435


>gi|86148541|ref|ZP_01066828.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
 gi|85833687|gb|EAQ51858.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
          Length = 486

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 151/432 (34%), Gaps = 56/432 (12%)

Query: 64  IAQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDN------TRKFLSLFASRLYGK 112
           +++GA   V   A      S+   S  I    P ++          R+   + A  +  +
Sbjct: 64  VSKGATVYVGHQASNVADASVVVVSTAINEENPEIIAAREARTPIVRRA-EMLAELMRFR 122

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    +AV GT GK++  + V QI   + L    +      S+       ++        
Sbjct: 123 HG---IAVAGTHGKTTTTALVTQIYSEADLDPTFVNGGLVKSAGTNARLGSS------RI 173

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++       + +                ++ +    TN+  DH+D +            
Sbjct: 174 LIAEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFETLKQTFI 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
            F   LP    A++  DD   +E++ +      +V++ G+ +   I ++       + + 
Sbjct: 219 DFLHNLPFYGQAVMCVDDPVVRELIPQVSR---QVITYGFSEDADIRIENYVQEGQQGKF 275

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  EGK + D    +PG     NA  A  +     I    +L+ +        RF+ +G
Sbjct: 276 TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDHLG 335

Query: 351 TNSRG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
               G     +  DY H    +++ ++  R+  T  R++++F                  
Sbjct: 336 EYETGKGVAMLVDDYGHHPTEVDVTIQAARSGWTDKRLVMIFQPHRYSRTRDLYDDFANV 395

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------AIRTAIEML-N 457
           L+  D+ I+ D     E P  I       +   I    +I+        A+ +A+  +  
Sbjct: 396 LEQVDVLILLDVYSAGEKP--IAGADGRSLSRTIRGRGKIDPIFVADINALPSALANVIQ 453

Query: 458 KQDVLVVAGKGH 469
             D+++  G G 
Sbjct: 454 GGDLVLTQGAGD 465


>gi|326333492|ref|ZP_08199733.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
 gi|325948692|gb|EGD40791.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
          Length = 472

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 96/437 (21%), Positives = 155/437 (35%), Gaps = 51/437 (11%)

Query: 55  DGHL--FIPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSL--- 104
           DG     +     +GA   V   A  +        S  IR + P   V    K L +   
Sbjct: 46  DGADSSMVAALREEGATVFVGHDASQVDGVDTLIVSTAIREDNPE-YVAAVEKGLRIYPR 104

Query: 105 ---FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
               AS + G+    +LAV GT GK++  S +    Q +G +     PT T+      + 
Sbjct: 105 SAGLASVMEGR---RVLAVAGTHGKTTTTSLLTVSLQAAGAA-----PTYTVGGELAASG 156

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                           +++G + + V  +        +   K  A   TN+  DH+D   
Sbjct: 157 TN--------------AAEGSSDLFVAEADESDGAFLVY--KPYAAVVTNVEADHLDQWG 200

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLK 280
           T++AY     + F   L  +   +   DD  + ++   AH+ G R + VG      +   
Sbjct: 201 TEEAYREGFAQ-FVGRLAPDGFLVAVIDDPGAADLRHVAHSLGRRFIGVGESELADVRAV 259

Query: 281 KVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +         T+ V+G D        +PG   V +AL A  + + +G    L+   LE 
Sbjct: 260 DIVLEGTTSSFTV-VDGLDELGRITLQIPGRHYVADALAALTVGLRLGHSFDLLKAGLES 318

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQG 397
                 R E  G  + G R+Y  YAH  + +   L + R++   GR+IV F         
Sbjct: 319 FTGTRRRMERKGEAA-GVRVYDSYAHHPSEIAGDLVSGRSVAGEGRLIVAFQPHMVSRTR 377

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIP----GFIEKGNRIEAIRT 451
                    L  AD  +V D     E  DPE     +   +P      +      EA   
Sbjct: 378 IFGEEMGRVLGAADEVVVLDVYLAREDYDPEVTGKLVADAVPLPPDRVVSVAGLEEAAVE 437

Query: 452 AIEMLNKQDVLVVAGKG 468
                   D+++  G G
Sbjct: 438 LARRARPGDLVLTLGAG 454


>gi|53711599|ref|YP_097591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           fragilis YCH46]
 gi|60679849|ref|YP_209993.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60389935|sp|Q64ZL9|MURD_BACFR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81174945|sp|Q5LIJ5|MURD_BACFN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52214464|dbj|BAD47057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           fragilis YCH46]
 gi|60491283|emb|CAH06031.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 444

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIG------------ 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++ +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 139 -------KSLALQVAEEKHDYYVIELSSFQLDN--MYNFRADIAVLMNITPDHLDRYDHC 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y NAK R+ +    +++      D    +E+ K    A     S   +   I   + 
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAHLYPFSAIKEEGSIAYVED 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +   + +  ++E +       L G+  +YN+L A       GI    + + L     V
Sbjct: 250 HEVVITEPIAFNMEQE----QLALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V    RG     D   T+  +      ++++T+    V+   G D+      I 
Sbjct: 306 EHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMTTKT--VLILGGKDKGNDYTEIE 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    + +  +   N   E   +    +  G+P    +    +A+  A ++  K + +
Sbjct: 361 ELVREKCSALVYLGLHN---EKLHEFFDRL--GLPVAEVQTGMKDAVEAAYKLAKKGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|188026236|ref|ZP_02961393.2| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
 gi|188022175|gb|EDU60215.1| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
          Length = 472

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 148/422 (35%), Gaps = 53/422 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 64  ASVVVVSTAISADNPEIQAAHELRIPVIRRA-EMLAELMRYRHG------IAVAGTHGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I  ++GL    +      S+          S  YL   ++       + +  
Sbjct: 117 TTTAMISGIYAQAGLDPTFVNGGLVKSAGTH---ARLGSSRYL---IAEADESDASFL-- 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 169 -------------HLQPLVAVVTNIEADHMDTYQGNFETLKDTFINFLHNLPFYGRAVMC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
            DD   + ++ R       V + G+ +   + + K     N+   TI+ E   +   +  
Sbjct: 216 IDDPVIRSLLPRVSR---YVTTYGFSEDADVRIVKYEQKGNQGFFTIARENMPELTVVLN 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI- 358
            PG     NA  A  +    GID   +L  L +      RF+F+G       N + G + 
Sbjct: 273 APGRHNALNATAAVAVATEEGIDDQHILSALVEFQGTGRRFDFLGNYSLRHVNGKEGEVM 332

Query: 359 -YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DY H    ++  +K  R      RI++VF                  L   D+ ++ 
Sbjct: 333 LVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYSRTRDLYDDFAHVLSQVDVLLML 392

Query: 417 DDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +  P  E   P      +   I       P ++ +  ++  I    + L   D+++V G 
Sbjct: 393 EVYPAGEKPVPGADSRSLCRTIRGRGQLDPIYVAEPEQVAQILA--QALEDNDLILVQGA 450

Query: 468 GH 469
           G+
Sbjct: 451 GN 452


>gi|58038644|ref|YP_190608.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconobacter oxydans 621H]
 gi|81352635|sp|Q5FUJ4|MURC_GLUOX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|58001058|gb|AAW59952.1| UDP-N-acetylmuramate--alanine ligase [Gluconobacter oxydans 621H]
          Length = 477

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 144/435 (33%), Gaps = 64/435 (14%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A   G A+ +V S+A    +          I VV        L   R      
Sbjct: 59  GHD----AANLGDAQVVVTSTAVKKDNPEVVAARAKLIPVVRRAEMLAELMRLRWS---- 110

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  + + + L    I     I ++  + R+ +   +      
Sbjct: 111 ---VAIGGTHGKTTTTSLVACVLEHARLDPTVING-GIIEAYGTNTRMGSGDWM------ 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RL  +       TN+  +H+D+  T++A   A    F
Sbjct: 161 -----------VVEADESDGSFLRLPAV---IAVVTNMDPEHLDHWGTEEA-MQAGYDQF 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293
              +P    A++  D    ++++ R  +   RV++ G+     I  +KV          +
Sbjct: 206 VSNIPFYGFAVLCVDHPQVQQMIPRLSDH--RVITYGFSPQADIRAEKVVMDKRGATFEV 263

Query: 294 SVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            V  +          F  P+ G   V N+L A  + + + I  +++   L     V  RF
Sbjct: 264 VVTNRQRNRSRRAGPFRLPMLGHHNVLNSLAAIAVALEMEISDSVIASALTTFKGVKRRF 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              G    G  I  DY H    +  +LK  R   +  +I V                   
Sbjct: 324 TRTG-EYNGISIVDDYGHHPVEIAAVLKAARQAGARNVIAVMQPHRYSRLKVLFNEFCTC 382

Query: 407 LDLADIAIVTDDNPRSEDP--EKIRAEIIHG-----------IPGFIEKGNRIEAIRTAI 453
           ++ AD  IV D     E P     R  ++ G           +P        I AI    
Sbjct: 383 MNDADTVIVADVYAAGETPIEGAGRDALVEGLRDRGHRSVVPLPDPAHLAEMINAI---- 438

Query: 454 EMLNKQDVLVVAGKG 468
                 D +V  G G
Sbjct: 439 --AKPGDYVVCLGAG 451


>gi|59801871|ref|YP_208583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|293398488|ref|ZP_06642666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
 gi|62900451|sp|Q5F6L6|MURD_NEIG1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|59718766|gb|AAW90171.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610959|gb|EFF40056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
          Length = 445

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 164/424 (38%), Gaps = 54/424 (12%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T          
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT---------- 147

Query: 163 TTPSPIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                       + L  +G       +E SS  L+    + ++  A +  N+  DH+D +
Sbjct: 148 --------PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVMNISEDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y + K  +F      +   ++ ADD + + + +       +  S+ ++  F   +
Sbjct: 198 DDLLDYAHTKAEIFRG----DGVQVLNADDVFCRAMKRAGRE--VKRFSLEHEADFWLER 251

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +    +  IS +        PL G     N + A  LC A+G+    +LEH++   
Sbjct: 252 GTGCLKQGNEDLISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P
Sbjct: 306 GLPHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTP 360

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +      + ++  D P      +IR ++        +     EA++TA       D
Sbjct: 361 LRDALKDKAKGVFLIGVDAP------QIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGD 414

Query: 461 VLVV 464
           ++++
Sbjct: 415 IVLL 418


>gi|167749944|ref|ZP_02422071.1| hypothetical protein EUBSIR_00912 [Eubacterium siraeum DSM 15702]
 gi|167657111|gb|EDS01241.1| hypothetical protein EUBSIR_00912 [Eubacterium siraeum DSM 15702]
          Length = 461

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 139/433 (32%), Gaps = 50/433 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV ++A    +        + +  V+   + L L  S          + V+GT GK
Sbjct: 67  GADLIVYTAAIMSDNPELIAAKASGVKTVERC-ELLGLVTSWYN-----KAVCVSGTHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ +S +  +     +    +  G    I                 A +   +  +    
Sbjct: 121 TTTSSMLTHMYLAQNVDLSTVIGGKLKAIGG------------SGRAGSSDVMVCEACEF 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                       +    +        N+  DH+D+ +T      +  +  +         
Sbjct: 169 S-----------NTFLHLFPNISIILNIDADHLDFFKTMDNLRASFTKFCDN---TTDIL 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEGKDFD- 301
           ++  DD  +   +K A     ++++ G   K  +  +        +    +   G   + 
Sbjct: 215 VVNGDDENTMRAVK-ASGFNKQIITFGKTDKNRYYPENIKRISDFQTDFDLMENGSKIER 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   V NA+ A    +A G+    + + L        RFE + T   G  +  D
Sbjct: 274 ISIHVPGAHNVLNAVAACAAALATGVTPENINKGLSTFWGAGRRFERLATIG-GITVVDD 332

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH    +   LK  + +    R+  V                  AL++AD  ++T+   
Sbjct: 333 YAHHPAEVAATLKTAKAMQDFKRVWAVHQPFTYSRTYTLMDDFASALEIADKVVLTEIMG 392

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             E        A++   IPG        E  R   +     D+++  G G        + 
Sbjct: 393 SREKNTYNVYSADLAAKIPGCKWFPTFEEVARYVADNAESDDMIITLGCG--------DV 444

Query: 479 EKKMSVDCDIIRE 491
            K      +I+RE
Sbjct: 445 YKVAFRIEEILRE 457


>gi|297170215|gb|ADI21253.1| UDP-N-acetylmuramate-alanine ligase [uncultured myxobacterium
           HF0010_08B07]
          Length = 462

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/429 (17%), Positives = 144/429 (33%), Gaps = 50/429 (11%)

Query: 64  IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
           I+ GA+ ++  +  ++++     +S+ +  + P +    +          + +S + G  
Sbjct: 48  ISLGAKIVIGHNEKNVRNSDVVVYSSAVNESNPEMKAAKSLNITLIPRAEMLSSLMRGFQ 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV G+ GK++  S +  I  ++ L    I     +    +    T          
Sbjct: 108 S---IAVAGSHGKTTTTSLIADIFVKAKLDPTFIIGGKILGQENKSILGT---------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                  G   +     S     H    +       TN+  DH+D++       ++    
Sbjct: 155 -------GEYLIVEADESDASFLH----LNPEISVVTNIDNDHLDFYGNNLEKLDSTFLQ 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---CAIHNKQQ 290
           F E LP    AI+  D   SK+V +         +S G+  K  +  K     +   K +
Sbjct: 204 FLENLPFYGSAIMCIDSDRSKKVFESLSRPK---ISYGFNKKADYFIKDLKQQSSFQKFK 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-- 348
           V  S  GK+  F   L G+    NA  A  +    GI+   + E  +    V  R E+  
Sbjct: 261 VVRSSTGKEITFELTLSGKHNTLNATAAFIVAQKAGINIKFIKESFKNFGGVSRRLEYKA 320

Query: 349 -VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIA 406
            +    +   +  DY H    L+  ++ +R+    + I  VF                  
Sbjct: 321 NIKIKDKSAILIDDYGHHPTELKATIEALRSTNPSKRICMVFQPHRYSRSTLLFKEFVEC 380

Query: 407 LDLADIAIVTDDNPRSE-DPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L   D  I+ D     E +   I        +I          N  E  +     +   +
Sbjct: 381 LRGVDTIIILDIYSAGEQNLHNISSYDFVNALIEKKKNAFFAKNLKEICKILESEIKDDE 440

Query: 461 VLVVAGKGH 469
           +LV  G G+
Sbjct: 441 ILVTQGAGN 449


>gi|126643342|ref|YP_001086326.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ATCC 17978]
          Length = 448

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/432 (19%), Positives = 147/432 (34%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I   A  +VVS+A   ++          I +V    + L       +G    
Sbjct: 39  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRIPIVRRA-EMLGELMRYRHG---- 90

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +          + PT  I                +  AL 
Sbjct: 91  --IAVAGTHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAALG 135

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                       +AS           ++ +A   TN+  DH+D ++            F 
Sbjct: 136 ESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFL 187

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DDA  +E++ R       V++ G+ +   I    V     +   T+ 
Sbjct: 188 HNLPFYGLAVVCGDDANIREILPRVGRP---VITYGFNEDNDIRAIDVEQDGMRSHFTVL 244

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G   
Sbjct: 245 RKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFE 304

Query: 354 RG---GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            G    ++  DY H    +E  +K  R +    R++++F                  L  
Sbjct: 305 LGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQ 364

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE------------MLN 457
            D  ++ +  P  E P  I       +   I    ++E I   I+            +L 
Sbjct: 365 VDQLLLLEVYPAGEKP--IVGADSRTLARSIRLRGQVEPI--LIDPVEGNLQNIMQNVLQ 420

Query: 458 KQDVLVVAGKGH 469
             D+L+  G G+
Sbjct: 421 PNDLLLTQGAGN 432


>gi|293610569|ref|ZP_06692869.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826913|gb|EFF85278.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 482

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 84/430 (19%), Positives = 147/430 (34%), Gaps = 52/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ I   A  +VVS+A   ++          I +V    + L       +G    
Sbjct: 73  GHQ--PENIKN-ANVLVVSTAIDPENPEIKAAIEQRIPIVRRA-EMLGELMRYRHG---- 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +          + PT  I                +  AL 
Sbjct: 125 --IAVAGTHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAALG 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                       +AS           ++ +A   TN+  DH+D ++            F 
Sbjct: 170 ESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFL 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DDA  +E++ R       V++ G+ +   I    +     +   T+ 
Sbjct: 222 HNLPFYGLAVVCGDDANIREILPRVGRP---VITYGFNEDNDIRAVDIEQDGMQSHFTVL 278

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            +G++        PG   V NAL A G+    G+    +   LE    V  RF+  G   
Sbjct: 279 RKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDDAISRALEGFSGVGRRFQVQGEFE 338

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                 ++  DY H    +E  +K  R +    R++++F                  L  
Sbjct: 339 LADGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQ 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEM-LNKQ 459
            D  ++ +  P  E P  I       +   I    ++E I         +  ++  L   
Sbjct: 399 VDQLLLLEVYPAGEKP--IVGADSRTLARSIRLRGQVEPILVDPVEGNLQNIMQNVLQPN 456

Query: 460 DVLVVAGKGH 469
           D+L+  G G+
Sbjct: 457 DLLLTQGAGN 466


>gi|239999606|ref|ZP_04719530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae 35/02]
 gi|240113346|ref|ZP_04727836.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae MS11]
 gi|240116307|ref|ZP_04730369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID18]
 gi|260439876|ref|ZP_05793692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI2]
 gi|268595417|ref|ZP_06129584.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268599420|ref|ZP_06133587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268601974|ref|ZP_06136141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291043152|ref|ZP_06568875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|268548806|gb|EEZ44224.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268583551|gb|EEZ48227.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268586105|gb|EEZ50781.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291012758|gb|EFE04741.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|317164858|gb|ADV08399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 445

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 165/424 (38%), Gaps = 54/424 (12%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T          
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT---------- 147

Query: 163 TTPSPIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                       + L  +G       +E SS  L+    + ++  A +  N+  DH+D +
Sbjct: 148 --------PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVMNISEDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y + K ++F      +   ++ ADD + + + +       +  S+ ++  F   +
Sbjct: 198 DDLLDYAHTKAKIFRG----DGVQVLNADDVFCRAMKRAGRE--VKRFSLEHEADFWLER 251

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +    +  IS +        PL G     N + A  LC A+G+    +LEH++   
Sbjct: 252 GTGCLKQGNEDLISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P
Sbjct: 306 GLPHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTP 360

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +      + ++  D P      +IR ++        +     EA++TA       D
Sbjct: 361 LRDALKDKAKGVFLIGVDAP------QIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGD 414

Query: 461 VLVV 464
           ++++
Sbjct: 415 IVLL 418


>gi|227874381|ref|ZP_03992565.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
 gi|227839789|gb|EEJ50235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
          Length = 456

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 141/400 (35%), Gaps = 45/400 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A V+S    L +    + S   I ++                     + AVTGT+GK++ 
Sbjct: 70  ASVISPGIPLDEPYVKMLSTAQIPIIGEIELAYQ--------SSKGKLCAVTGTNGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I +     +  +G                            L ++  +    E 
Sbjct: 122 VSLIGEILKSEYSDTHVVGNIGN------------------PFTAEALETEEQSATVCEV 163

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+   +        + TN+  DH+D H+T + Y   K  + E    ++S  + Y D
Sbjct: 164 SSFQLE--TIVDFHPNVSAITNITPDHLDRHKTMKNYIAVKESIAENQEEEDSIVLNYMD 221

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FP 305
               K   KR+        S   + K    K+   +          E K+          
Sbjct: 222 PELRKFGKKRSLKPKVLWFSSEEEPKDTKEKESLFLR-GDTFYYKKEDKEEKLFTTKDVH 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+    N L A G+ + +G+    +++  +K   V  R EFV    R G  Y + +  
Sbjct: 281 LLGKHNYENILCAVGVGLKMGVPMDKIIKVCKKFKPVEHRIEFV--RERSGVKYYNDSKG 338

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +N ++  ++ +R +     +V+ G G D+     P + +    +  + ++       E  
Sbjct: 339 TN-VDAAIQALRAMPGP--VVLIGGGYDKHVDFDPWVKEFKGRVKYLVLI------GETR 389

Query: 426 EKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +I      +G    +   +  EA++      +  D +++
Sbjct: 390 NQIAETAKKNGFQNVMFAEDMDEAVKDCAAYADPGDYVLL 429


>gi|52841980|ref|YP_095779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629091|gb|AAU27832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 455

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 131/367 (35%), Gaps = 31/367 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  K+   ++AV GT GK++  S +  I  ++G++   +     +SS    +  
Sbjct: 95  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFL--IGGVSSDFNTSAC 150

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 ++ +A  Y S+                       +       NL  DH D +  
Sbjct: 151 LGKGRWFVIEADEYDSAFFDKRPKFMHY------------RPNIAVLNNLEFDHADIYPD 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +PK   AI   DD    EV+ R      R+ ++   G+   + ++
Sbjct: 199 LAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQ--FSRIETLALSGEAEWVAEL 255

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 Q   +   G   +  +PL G+F V N L A       G++  +  + LE+   V
Sbjct: 256 IDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPEVAAKALEQFSPV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVF-GCGGDRDQGKRP 400
             R E V +N  G  +Y D+AH   ++   +    R+    RI  V          G   
Sbjct: 316 KRRLE-VRSNRHGITVYDDFAHHPTAITKTIDALKRSGRHQRIFAVMEFASYTMRTGVHA 374

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                AL   D A V        +P+   ++  +      +    N  E ++  I+ + +
Sbjct: 375 AEMAHALAPVDGAYVL-------EPQDFNLKDFVSSWTCPYKICKNNGEIVKEIIKTVRE 427

Query: 459 QDVLVVA 465
            D ++V 
Sbjct: 428 GDAVLVM 434


>gi|256395244|ref|YP_003116808.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
 gi|256361470|gb|ACU74967.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
          Length = 469

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 147/428 (34%), Gaps = 51/428 (11%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I QA     G + +VVS+     +          +          S  AS + G      
Sbjct: 66  IGQAPENLDGVDTVVVSTDIPAGNIEVVEAKARGL----RLLHRASALASLMPGY---RS 118

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSS-----FQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +A+ GT GK++ +S V    + +GL        +IG T                   +  
Sbjct: 119 VAIAGTHGKTTTSSMVTVALRHAGLDPSFVIGGEIGETG---------ESGHAGSGDVLV 169

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A +  S    TH                  +      TN+  DH D+     A   A+ +
Sbjct: 170 AEADESDGTFTHY-----------------RPDISVITNIELDHPDHFADV-AQVRAEFQ 211

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
            F   L      + YADD  ++ + +R    G RVL+ G      I +  V  +      
Sbjct: 212 DFAGRLEPGGTLVCYADDPAARTIAERTAARGVRVLTYGAGADVDIRVTDVSTVGGFPVF 271

Query: 292 TI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+ + E         +P      NA  A G+ +A+G+D    LE +        R +F+G
Sbjct: 272 TLVTAEDAHGPITLSIPARHNALNAAAALGVALALGVDVEPYLEGVAGFSGARRRMQFLG 331

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             S G ++Y DY H    +  +L   R +   GR++  F                 AL  
Sbjct: 332 EAS-GVKVYDDYGHHPTEIASVLSAARELAGQGRVVAAFQPHRYFRTNTFLHEFGPALGG 390

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AD+ +V D     E P      + I AE        + + +     +   E+    D++V
Sbjct: 391 ADVVVVLDVYAHGEKPIPGVGGDVIAAETGLPPEASVFEPDFDRVPQRLAELAAPGDLVV 450

Query: 464 VAGKGHET 471
             G G  T
Sbjct: 451 TVGAGDVT 458


>gi|325123865|gb|ADY83388.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 482

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 83/430 (19%), Positives = 147/430 (34%), Gaps = 52/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ I   A  +VVS+A   ++          + +V    + L       +G    
Sbjct: 73  GHQ--PENIKN-ANVLVVSTAIDPENPEIKAAIEQRVPIVRRA-EMLGELMRYRHG---- 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +          + PT  I                +  AL 
Sbjct: 125 --IAVAGTHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAALG 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                       +AS           ++ +A   TN+  DH+D ++            F 
Sbjct: 170 ESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFL 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DDA  +E++ R       V++ G+ +   I    +     +   T+ 
Sbjct: 222 HNLPFYGLAVVCGDDANIREILPRVGRP---VITYGFNEDNDIRAVDIEQDGMQSHFTVL 278

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            +G++        PG   V NAL A G+    G+    +   LE    V  RF+  G   
Sbjct: 279 RKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDDAISRALEGFSGVGRRFQVQGEFE 338

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                 ++  DY H    +E  +K  R +    R++++F                  L  
Sbjct: 339 LADGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQ 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEM-LNKQ 459
            D  ++ +  P  E P  I       +   I    ++E I         +  ++  L   
Sbjct: 399 VDQLLLLEVYPAGEKP--IVGADSRTLARSIRLRGQVEPILVDPVEGNLQNIMQNVLQPN 456

Query: 460 DVLVVAGKGH 469
           D+L+  G G+
Sbjct: 457 DLLLTQGAGN 466


>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
 gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
          Length = 452

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 160/427 (37%), Gaps = 48/427 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G +  V+S    L +          I VV +   F        Y      ++A+TG +GK
Sbjct: 69  GVDLAVISPGVPLSEPEIQAAIQRGIPVVGDVELFAQ------YRPTSAKLIAITGANGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V + V ++C+ +GL +   G                         L  LS +      
Sbjct: 123 TTVTTLVGEMCKSAGLKTIVAGNIGL-------------------PVLDTLSMETPDVYV 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+    + +   A +  NL  DH+D + + Q+Y  AK  +F          ++
Sbjct: 164 LELSSFQLE--TTNSLLADAATMLNLSEDHMDRYDSMQSYAVAKAHIF----YHAKLQVL 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DDA+S  +M RA  A    ++ G           +  ++ +  ++             
Sbjct: 218 NRDDAWS-LMMARAKLAQ---VTFGLDDVVAEQDYGIKQVNGETWLSCGTHDLMNIRDLK 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G     NAL A  LC  IG+D A +++ L     +P R E+V   +     Y D +  
Sbjct: 274 IAGLHNASNALAAMALCRGIGLDFAPIIQTLYNFKGLPHRVEWVA--NIDDVDYYDDSKG 331

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +N +      +  ++    +V+   G  + Q   P+   ++ +   + ++  D P     
Sbjct: 332 TN-VGATCAALSGLSQK--VVLIAGGEGKGQDFSPLKEAVSTNARAVVLIGRDAP----- 383

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             I AE++          +  EA+  A ++    D ++++     +  +  N   +  V 
Sbjct: 384 -LIEAELLSTNVPMYHAADLPEAVTIAQKLAQTGDAVLLS-PACASFDMFKNYVHRAEVF 441

Query: 486 CDIIREI 492
              ++ +
Sbjct: 442 VAAVKRM 448


>gi|160878268|ref|YP_001557236.1| UDP-N-acetylmuramate--alanine ligase [Clostridium phytofermentans
           ISDg]
 gi|189029008|sp|A9KQI8|MURC_CLOPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160426934|gb|ABX40497.1| UDP-N-acetylmuramate--alanine ligase [Clostridium phytofermentans
           ISDg]
          Length = 469

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 138/433 (31%), Gaps = 54/433 (12%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPE 115
           FI Q          ++    L  ++A ++S+              L  +   G+     +
Sbjct: 58  FIGQKAEN------ITEDIDLVVYTAAVKSDNVEYQAVQKHNIPMLDRADFLGQVMLQYK 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + V+GT GK++  S V  +    G     I     + +   + R+       +     
Sbjct: 112 NAIGVSGTHGKTTTTSMV-SLMMLEGNFDPTISVGGILDNIEGNIRIGHSENFIVESC-- 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                               ++             N+  +H+D+ +  +         F 
Sbjct: 169 ------------------EYKNSFLSFNPAHAIILNIEAEHLDFFKDIEDI-RTSFHTFA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--------QGKFIHLKKVC---- 283
           + LP     +++      +E+++   +  C V++ G         Q K  +    C    
Sbjct: 210 KKLPDYGNLVVWGGIDRYEELIE---DLSCNVITYGMFSSEEEREQNKDRYDYAACNVTS 266

Query: 284 AIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +   +   GK  D     + G+  V N+L A  L   +G   + + + L      
Sbjct: 267 DDFGLRSYDLYKHGKFVDRINLAVIGDHNVLNSLAAISLVDTLGGTMSAIKKALLAYKGT 326

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RFE  G    G  I  DYAH  + ++  L    +     I  VF              
Sbjct: 327 ERRFERKGV-LNGITIVDDYAHHPSEIKATLIAAASYPHKDIWCVFQPHTYTRTKSFFHD 385

Query: 403 GKIALDLADIAIVTDDN-PRSEDPEKIRA-----EIIHGIPGFIEKGNRIEAIRTAIEML 456
              AL LAD  ++ D    R E+P  I +     E++          +  E  +  +E  
Sbjct: 386 FTTALALADKIVLADIYAAREENPGDISSKDIQNELLKIGKEAYYISDFAEIEKFLLEHC 445

Query: 457 NKQDVLVVAGKGH 469
              D+L+  G G 
Sbjct: 446 TNGDLLITMGAGD 458


>gi|299147132|ref|ZP_07040199.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_23]
 gi|298515017|gb|EFI38899.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_23]
          Length = 444

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 139/385 (36%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ PI++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPIILKLKAQGTPVISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+    G                            ++     +  +E SS  LD   +  
Sbjct: 129 LNVGLAGNIG-------------------KSLALQVAEDYHDYYIIELSSFQLDN--MYN 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y +AK R+ +   P ++      D    +E+ K  
Sbjct: 168 FRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     +   +   I   +   +   + +  ++E ++      L G+  +YN+L A  
Sbjct: 228 LKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNMEQEE----LALTGQHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V    RG     D   T+  +      ++++T
Sbjct: 284 SANLAGIAKENIRKALSDFKGVEHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +    V+   G D+      I   +    + +  +   N      EK+       G+P  
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEDLVREKCSALVYLGLHN------EKLHEFFDRFGLPVA 392

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +A+  A ++  K + +++
Sbjct: 393 DVQTGMKDAVEAAYKLAKKGEAVLL 417


>gi|226226835|ref|YP_002760941.1| UDP-N-acetylmuramate--L-alanine ligase [Gemmatimonas aurantiaca
           T-27]
 gi|226090026|dbj|BAH38471.1| UDP-N-acetylmuramate--L-alanine ligase [Gemmatimonas aurantiaca
           T-27]
          Length = 501

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 143/419 (34%), Gaps = 54/419 (12%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A A+V SSA      + +A   +  PI+      +     A  + G     ++ V+GT G
Sbjct: 98  ARALVYSSAIPATHPEMAAARAAGIPII------RRAEALADAVSG---GTLIGVSGTHG 148

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++      +    +G       PT  +                    L      G    
Sbjct: 149 KTTTTVMTTEALASAGRH-----PTGVVGGRV--------ESWEGNLRL------GGDTY 189

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA     D+  L  +        N+  DH+D ++          R FE  + K    +
Sbjct: 190 VVEADE--YDRSFLA-LDPTVAVVLNVEADHLDIYRDLDDIT----RTFEVYVSKAKTLV 242

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-- 303
             ADD      ++ A +      S    G     + V A      + +   G  F  +  
Sbjct: 243 RCADDE-GAMSLRVASSREIIAYSATVPGTLPAPRAVDARLLAADLVLDAAGSRFMVVFD 301

Query: 304 --------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     +PG   V NAL A G  +A+G   A +   L     V  RF+ +G+ + G
Sbjct: 302 GERLGEISLAVPGLHNVRNALAAIGSGLALGCTVAQMAPGLAGFRGVQRRFQRLGSAA-G 360

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   L   R    GR IV+ F                 AL   D+  
Sbjct: 361 VEVVDDYAHHPTEVRATLAAARHAFPGRRIVLAFQPHLYSRTRDLQQEFADALRETDVLY 420

Query: 415 VTDDNPRSEDPE--KIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + D     E PE     + +   IPG + +  G R + +   ++ + + DV++  G G 
Sbjct: 421 LCDIYGARETPEPGVTSSLVADRIPGDVVRWQGPRTDVVPALLQGVAEGDVVLTMGAGD 479


>gi|119358484|ref|YP_913128.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
 gi|166222971|sp|A1BJX7|MURC_CHLPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119355833|gb|ABL66704.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 466

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 137/408 (33%), Gaps = 48/408 (11%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                 +  A  ++  P++  D   + L       YG      + V+GT GK++  + + 
Sbjct: 76  RPAENVEIVAAEQAGIPVIKRD---EMLGELMRYNYG------VCVSGTHGKTTTTAMIA 126

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +   +G S   +     +S + + + +       + +A  +  +               
Sbjct: 127 TMLIEAGESPTVM--IGGVSDYLKGSTVVGSGKYLVIEADEFDRAF-------------- 170

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +        +L  +H+D + T +    A    F   +P     I   D     
Sbjct: 171 -----LKLTPTIAVINSLESEHMDTYGTIEELRKA-FIAFANKVPFYGRVICCVDWP--- 221

Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQV 312
           E+ K   +   R  + G  +   +    +    N+ + T+   GK++      +PG   V
Sbjct: 222 EIRKLIPHLNRRYTTFGIDEPADVMASDMVMDKNRSRFTVRASGKEYPGVSLNVPGRHNV 281

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A    + +GI    ++  L +   +  RF+    NS G  +  DYAH  + ++  
Sbjct: 282 MNALAAFASGLELGIAPERIIAGLTRYSGMRRRFQIKYDNSAGVLVVDDYAHHPSEVKAA 341

Query: 373 LKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK---- 427
           +K  R       IV VF         +       AL  AD   V D  P  E        
Sbjct: 342 VKAARDGWPNAEIVAVFQPHLFSRTREFADEYGWALLRADKIYVADIYPSREKAADYPGV 401

Query: 428 ----IRAEI-IHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
               + A +   G        +R E +   +E    K  V++  G G 
Sbjct: 402 SGSLVAAAVHKAGGKHAEFIADR-ELLYQTVETCPQKSTVVLFMGAGD 448


>gi|221632098|ref|YP_002521319.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
 gi|221155634|gb|ACM04761.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
          Length = 462

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 87/410 (21%), Positives = 142/410 (34%), Gaps = 40/410 (9%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           AQ A  +VV+SA   Q       +   I +V      L   A+          +AV GT 
Sbjct: 70  AQDAHLLVVTSAVRAQHPEVAAFAAQRIPIVKRA-ALLGWLAASY------RTIAVAGTH 122

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+    +      +GL+         I +  +D   T  S       L  + +    +
Sbjct: 123 GKSTTCGMIALALDAAGLTPGFA-----IGAEVRDLGGT--SARLPGGNLFVVEADEYDY 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +              ++       N+  DH D    + +   A  R    L P    A
Sbjct: 176 SFL-------------FLEPDIAVVLNVDHDHPDLFPDRASVARAFRRFLARLRP-VGTA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +++ADD  +  V     + G RV++ G   +  +                  G  +    
Sbjct: 222 VVWADDPVACAVADELQSRGHRVVTFGETAEAAYRVLPDGALR------DPSGAIWPLAL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG     NA  A    + +G+   + +  LE  + V  RFE VG    G R+ +DYAH
Sbjct: 276 AVPGRHNRLNAAAAVAAVVQVGVPLVVAVRALEHFNGVGRRFEEVGI-VNGVRVILDYAH 334

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +   +   R    + R+  VF         +       AL+ AD+A+V +     E
Sbjct: 335 HPREIAATIAAARERFPAARLWAVFQPHTYSRTARFLTEFAHALEQADLAVVAEIYAARE 394

Query: 424 DP-EKI-RAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P   I  A +   I     I   + + A  T    +   DV++V G G 
Sbjct: 395 QPLAGIDAAALASAIRRIPAIAVPDPMAAAETVGAAMRAGDVVLVLGAGD 444


>gi|220912340|ref|YP_002487649.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859218|gb|ACL39560.1| UDP-N-acetylmuramate/alanine ligase [Arthrobacter chlorophenolicus
           A6]
          Length = 464

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 93/400 (23%), Positives = 146/400 (36%), Gaps = 52/400 (13%)

Query: 48  AIVGNKEDGHLFIPQAIAQG----AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
           A  G +      I  A   G    A+ +V  SA    +          + V+  +    +
Sbjct: 60  ATKGAR------IAVAYDAGNLGDAQTVVAGSAIRADNPELAAARQAGLPVLHRSEALAA 113

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRL 162
                      + ++ + GT GKS+  S V  + Q +G   SF IG  + + S   +   
Sbjct: 114 TMGE-------DTVVTIAGTHGKSTTTSMVTVLLQGAGLDPSFAIG--ANVPSLGVNAAH 164

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T                G+     + S      +R           TN+  DH+D++ T
Sbjct: 165 GTS---------------GIFVAEADESDGSFLNYR-----PQIAVVTNVEADHLDHYGT 204

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKK 281
            +A + +  R F  LLP +   +  ADD  ++ + +R  NA   RVL  G  G       
Sbjct: 205 AEAVYESFDR-FAALLPADGLLVACADDPGARALAERTRNAGTTRVLLYGTAGD---ADL 260

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                    V +S     FD    +PG     NA  A  + + +G+        L     
Sbjct: 261 TLYDDGPGSVAVSTADGRFDLALQVPGRHNALNAAAAFAVALELGVAPGAAASALGSFSG 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRP 400
              RFE  G  +RG R++ DYAH    +   L   R++     + V+F         +  
Sbjct: 321 ASRRFELKG-EARGVRVFDDYAHHPTEVRAALTAARSVAGEHKVHVLFQPHLFSRTREFA 379

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHG 435
                ALDLAD A+V D  P  EDP      K+ A+ + G
Sbjct: 380 REFADALDLADTALVLDIYPAREDPIPGVTSKLIADHMAG 419


>gi|330721151|gb|EGG99273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-22C6-diaminopimelate--D-
           alanyl-D-alanine ligase [gamma proteobacterium IMCC2047]
          Length = 376

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 104/316 (32%), Gaps = 19/316 (6%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +V+N R  L L  S         +LA+TG++GK++V      I  + G         +T 
Sbjct: 1   MVENCRDALGLLGSINRESFKGPMLAMTGSAGKTTVKEMSAAILGQLGN------TLATA 54

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
            +F  D              L          + + ASS G   +    +K      TN  
Sbjct: 55  GNFNNDLGAPL-------TLLRLAKEHQYAVLELGASSIGEIAYTAGLVKPDVAIITNAA 107

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             HI+          AK  + + L P    A+I  DD  + +   RA +    V S+   
Sbjct: 108 EAHIEGFGCLNNVVQAKGEILDAL-PPSGVAVINGDDLNAYKWKARAGDRRQLVFSLNEN 166

Query: 274 --GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
               F         +      +              G+  + NAL AA     +G     
Sbjct: 167 SGADFFARSYELQANGGFAFELVSPEGAIKVTLNHLGKHNIANALAAAAATSELGATLLQ 226

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           +   LE +  V GR   +  +S G RI  D Y     SL   +  + +   G  I+V G 
Sbjct: 227 IKTGLEAVGPVAGRLTGITLSS-GARIIDDSYNANPESLRAAID-VLSQCPGHKILVLGD 284

Query: 391 GGDRDQGKRPIMGKIA 406
             +          + A
Sbjct: 285 MAELGDTALHDHQEAA 300


>gi|325130846|gb|EGC53579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis OX99.30304]
          Length = 445

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 164/418 (39%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++  DDA+ + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNVDDAFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATKD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   +A
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|169794349|ref|YP_001712142.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AYE]
 gi|184159850|ref|YP_001848189.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ACICU]
 gi|213159076|ref|YP_002321074.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|215481905|ref|YP_002324087.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|239503825|ref|ZP_04663135.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB900]
 gi|301344638|ref|ZP_07225379.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB056]
 gi|301513416|ref|ZP_07238653.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB058]
 gi|301596387|ref|ZP_07241395.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB059]
 gi|332850155|ref|ZP_08432542.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332868969|ref|ZP_08438528.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
 gi|189029225|sp|A3M9Y0|MURC_ACIBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711854|sp|B7GV74|MURC_ACIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711855|sp|B7ICE4|MURC_ACIB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470258|sp|B2I1J4|MURC_ACIBC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470266|sp|B0V9F6|MURC_ACIBY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169147276|emb|CAM85135.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii AYE]
 gi|183211444|gb|ACC58842.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078672|gb|ABO13724.2| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii ATCC
           17978]
 gi|213058236|gb|ACJ43138.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|213988079|gb|ACJ58378.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|322509764|gb|ADX05218.1| murC [Acinetobacter baumannii 1656-2]
 gi|323519777|gb|ADX94158.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332731004|gb|EGJ62310.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332733012|gb|EGJ64214.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
          Length = 482

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 85/432 (19%), Positives = 147/432 (34%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I   A  +VVS+A   ++          I +V    + L       +G    
Sbjct: 73  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRIPIVRRA-EMLGELMRYRHG---- 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +          + PT  I                +  AL 
Sbjct: 125 --IAVAGTHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAALG 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                       +AS           ++ +A   TN+  DH+D ++            F 
Sbjct: 170 ESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFL 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DDA  +E++ R       V++ G+ +   I    V     +   T+ 
Sbjct: 222 HNLPFYGLAVVCGDDANIREILPRVGRP---VITYGFNEDNDIRAIDVEQDGMRSHFTVL 278

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G   
Sbjct: 279 RKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFE 338

Query: 354 RG---GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            G    ++  DY H    +E  +K  R +    R++++F                  L  
Sbjct: 339 LGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQ 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE------------MLN 457
            D  ++ +  P  E P  I       +   I    ++E I   I+            +L 
Sbjct: 399 VDQLLLLEVYPAGEKP--IVGADSRTLARSIRLRGQVEPI--LIDPVEGNLQNIMQNVLQ 454

Query: 458 KQDVLVVAGKGH 469
             D+L+  G G+
Sbjct: 455 PNDLLLTQGAGN 466


>gi|144897248|emb|CAM74112.1| UDP-N-acetylmuramate--alanine ligase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 474

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 102/283 (36%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+DY+ +     +A  R F E +P    A    D    + ++ R  
Sbjct: 174 LPATCVVVTNIDPEHMDYYGSFDKLRDA-FRTFVENIPFYGFAACCIDHPEVQALIARVP 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-------DFLFPLPGEFQVYN 314
           +          Q   I    V       +  + +  +         D   P+ GE  V N
Sbjct: 233 DRKIVTYGFSPQA-LIRATNVKIGPGGARYDVVITDRVTGATRIIDDVRLPMYGEHNVLN 291

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A      +G+ + +V + L     V  RF   G  ++G  +  DY H    +  +LK
Sbjct: 292 SLAAIACANELGLTNDVVRKALGGFSGVKRRFTKTG-EAKGITVIDDYGHHPVEINAVLK 350

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R+ T+G +I V                    + AD  IV D     E P    A+  H
Sbjct: 351 AARSATTGNVIAVVQPHRYSRLSSLFPEFCTCFNDADTVIVADVYAAGEQPID-GADRDH 409

Query: 435 GIPGFIEKGNR-------IEAIRTAIE-MLNKQDVLVVAGKGH 469
            + G  E G+R         A+   ++ +    D++V  G G+
Sbjct: 410 LVMGLQEHGHRHVIALPEASALAGIVDGLAKSGDMVVCLGAGN 452


>gi|254786996|ref|YP_003074425.1| UDP-N-acetylmuramate--L-alanine ligase [Teredinibacter turnerae
           T7901]
 gi|259509783|sp|C5BP33|MURC_TERTT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237685124|gb|ACR12388.1| UDP-N-acetylmuramate--alanine ligase [Teredinibacter turnerae
           T7901]
          Length = 473

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 140/430 (32%), Gaps = 71/430 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V SSA    +          I VV    + L       +G      +AV GT GK
Sbjct: 74  GVDVVVNSSAVDEANPELLEARQQRIPVVRRA-EMLGELMRYRHG------IAVAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL-SYLSSQGVTHV 185
           ++  S +  I            PT  I            + +  ++ L +       + +
Sbjct: 127 TTTTSLIASIFAE-----GDKDPTFVIGGLLNSAGT--NAALGASRYLVAEADESDASFL 179

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +             F   LP    A+
Sbjct: 180 ---------------HLQPMVAVVTNIDADHMDTYGGDFGTLKKTFVEFLHNLPFYGVAV 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFL 303
           +  DD     ++    +    V++ G+          V     KQ+  I   EG+  D  
Sbjct: 225 MCGDDPVITSLI---PDIARTVITYGFSEDCDFKAYDVKQESGKQRFKIKRPEGEPLDIY 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRI--Y 359
             +PG+  V NA  A  +    GID   + + L +   V  RF+  G     +GG +   
Sbjct: 282 LNMPGQHNVLNATAAVAVATDEGIDDIAIQQGLAQFMGVGRRFQIYGDYPLPQGGSVMLV 341

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    +   ++ +R +    R+ +V+                  L   D  ++ + 
Sbjct: 342 DDYGHHPREVAATIRAVRDSWPDRRLFMVYQPHRYTRTRDLYEDFVEVLSSVDQLVLLEV 401

Query: 419 NPRSEDP-------------------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
               E+P                   + I  E I G+P  ++            +++   
Sbjct: 402 YAAGEEPIPGADGRHLSRTIRTRGLVDPIFVEGIEGVPAVVK------------DLVKPG 449

Query: 460 DVLVVAGKGH 469
           D+++  G G+
Sbjct: 450 DIIITQGAGN 459


>gi|121611886|ref|YP_999693.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
 gi|121556526|gb|ABM60675.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 890

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 142/406 (34%), Gaps = 41/406 (10%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N    +V+       L+A    G+ P  ++AVTGT+GK++ A  + Q+    GL    
Sbjct: 477 PRNVAQAIVER------LYAHGDDGRIP--VVAVTGTNGKTTTARLIAQLFTAQGLR--- 525

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +G T+T   +    ++ +        A + L    V     E +  G+ +  L   +   
Sbjct: 526 VGMTNTDGVYVNGRQIDSGDCSGPKSARNVLLHPEVDAAVFETARGGILREGLGFDRCQV 585

Query: 207 GSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK----- 258
              TN+G  DH+   Y  T Q     K  + + + P    A++ A D     +       
Sbjct: 586 AVVTNIGTGDHLGLNYITTVQDLAVLKRVIVQNVAP-GGYAVLNAADPIVAAMAPACPGK 644

Query: 259 -------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                  R H       + G++  ++    + A     + TI +  +D          FQ
Sbjct: 645 VIYFAGGRHHPVMVTHRAQGHRTVYVDGDCIVASEGSWRETIHL--RDVPVTRNGTIAFQ 702

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSL 369
           V N + A      +G+    +   L             F   + RG  +  DY H  +++
Sbjct: 703 VDNVMAAVAAAWGVGLPWQTLRRGLSGFVNDSDNAPGRFNIMDYRGATLIADYGHNPDAM 762

Query: 370 EMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDP 425
             +   +  I   +  R  VV    GDR          I     D  I+  D   R    
Sbjct: 763 RALASAVEAIDAASGKRRSVVISAAGDRRDEDIRQQSAILGAAFDEVILYQDAAQRGRSD 822

Query: 426 EKIRAEIIHGIPGFIEKGNRIE------AIRTAIEMLNKQDVLVVA 465
            ++ A +  G+ G     +  E      AI TA+  L   D+ +V 
Sbjct: 823 GEVMALLRQGLIGAARARHIEEIHGEFNAIDTALARLQPGDLCLVL 868


>gi|222086443|ref|YP_002544977.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
 gi|221723891|gb|ACM27047.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
          Length = 471

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 144/420 (34%), Gaps = 47/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + VV        L   R       N +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKKSNPELAAAREKLLPVVRRAEMLAELMRFR-------NAIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    I     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLEAGGLDPTVING-GIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADVAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVLC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  +   ++++ G   +  +    V     +    I +  +        
Sbjct: 218 IDHPEVQSLVGRIEDR--KIITYGENPQSDVRFSNVRIDGTRSLFDIEIRRRRTGKVIHI 275

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + P+PG   + NA  A  +   +GI +  + + L     V  RF   G    G +++
Sbjct: 276 KDLVMPMPGRHNISNATAAVAVANRLGISNEAIAKGLASFGGVKRRFTLTG-EWNGVKVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +LK  R    GR+I V                    + AD   +    
Sbjct: 335 DDYGHHPVEIKAVLKAAREACKGRVIAVHQPHRYTRLASLFEEFAACFNDADSIFLAPVY 394

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
              E+P      +++ + I  G        +  E +   I E+    D +V+ G G  T 
Sbjct: 395 AAGEEPIEGVDSQELVSRIKAGGHRDARYLSSQEDLAPLIAEIAQPGDFVVLLGAGSITY 454


>gi|206895540|ref|YP_002247022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738157|gb|ACI17235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 441

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 156/425 (36%), Gaps = 53/425 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            V S  +SL         +  + VV      LS  ASR         +AVTGT+GK++  
Sbjct: 67  CVTSPGFSLDHPVLRSLKDRGVPVVGELE--LSFDASRWNY-----WIAVTGTNGKTTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           SF+  + + +G +    G                P   +L + +S       T +  E S
Sbjct: 120 SFIGHLLRTAGFNVVVGGNIGV------------PVTSFLNEPISE------TIIVAEVS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   +   +     F NL  DH+D H + + YF  K R+F+ L   +   ++ A+D
Sbjct: 162 SFQLE--TVHTFRPQVAVFLNLTPDHLDRHGSMENYFQTKARIFK-LQQPQDLGVLNAED 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            ++  ++    +   R L+ G +   +H  +         V    +         L G  
Sbjct: 219 RWASSLIGSLKS---RTLAFGIEKGDVHWSEGFLNVLGTTVASVSD-------VKLRGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSNSL 369
            + N       C  +  D       + +      R EFV +   G   Y D  A   +S 
Sbjct: 269 NLANIAAGVAACYHLLPDGFDFGSAISQFCAPEHRIEFVRSVG-GVSFYDDSKATNPDST 327

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKI 428
            + L+  +       +VV   G ++      +   I        A+V       E  E I
Sbjct: 328 IVALEAFQE-----PVVVILGGRNKGMDFAALAEFIKRKSTVKWAVVM-----GEAKESI 377

Query: 429 RAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +  ++  G     E  +  EA+  A E+    DV++++     +  +  N E++     +
Sbjct: 378 KESLLANGFENISEADSLEEAVHLAYEIAAPGDVVLLS-PACASFDMFKNFEERGDRFKE 436

Query: 488 IIREI 492
           I+R++
Sbjct: 437 IVRKL 441


>gi|94970658|ref|YP_592706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
 gi|122063234|sp|Q1IKG8|MURD_ACIBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94552708|gb|ABF42632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 453

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 148/399 (37%), Gaps = 53/399 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S                 I V+                  P +++A+TG++GK++  
Sbjct: 72  IVISPGVPFDQPQLEQARKQGIPVIGEIELAAQFV--------PGHVIAITGSNGKTTTT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S    I Q  G  +   G   T +                  + + L++   T   +E S
Sbjct: 124 SLCGDILQSGGKKTLVGGNIGTPAI-----------------SFAQLANDD-TWSVLEIS 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   ++  +    +  N+  DH+D H T + Y  AK R+FE    +   AI+ AD+
Sbjct: 166 SFQLE--TIERFRPEIAAILNITPDHLDRHGTFEKYAAAKERIFENQ-REHDFAILNADN 222

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
               E+ KR  +   +VL    Q +  H   V       ++       + + +      L
Sbjct: 223 EPCVEIAKRVKS---QVLWFSRQHEVKHGTFVRED----KIYFRDPKGEREIMPVADMLL 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V N L A  + +A  +    + + + +   V  R E+  T  +G   Y D   T+
Sbjct: 276 KGAHNVENVLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLEYTAT-VKGVDYYNDSKATN 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             ++  +K + + + G  +++   G D+      +   +      +  +           
Sbjct: 335 --VDATIKALESFSKGVHLIL--GGKDKGSPYTVLNDLLHERAKTVYTI------GAAAA 384

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           KI AE+  G+   +       A++ A +   K DV+++A
Sbjct: 385 KIEAEV-KGV-EVVHAETLENAVKLASQKAVKGDVVLLA 421


>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
 gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
          Length = 492

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 150/406 (36%), Gaps = 40/406 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS    L +       ++ I  +      L L A          I AVTGT+GKS
Sbjct: 86  ASRIVVSPGVPLSEPILAYAMDSGIPTISE----LGLAAEAFPKAV--KIAAVTGTNGKS 139

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V +F  QI Q++G+ +F  G   T  S A       PS     +              +
Sbjct: 140 TVTTFTGQILQQAGVRTFIGGNLGTPFSDAACECFKFPSDDPPYQ-----------VTVL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L+           G   NL  DH++ H++ + Y   K RLFE  +     +II 
Sbjct: 189 EVSSYQLELP--GSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFER-MDSSKLSIIP 245

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306
             D + ++V         +  S   +     L  +      ++  + V     +    L 
Sbjct: 246 HADEFLRKVA-------YKYNSGSTKAWLGALPGIQLDSQARRAVVVVPTTKAEARLYLS 298

Query: 307 ----PGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                G     NA  A    L + +G+D   +   + +L  +P R + VG + +G     
Sbjct: 299 GLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWIN 358

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDD 418
           D   T+  ++     I+ +   + +++ G           +  K   D      AIVT  
Sbjct: 359 DSKATN--VDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLGFKKLSDLLQNHRAIVT-F 415

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  EK   E    IP F       +A+  A ++  + D++++
Sbjct: 416 GAFGEQIEKELKEANVSIPCF-RSLTMEDAVARAEKLSKQGDIILL 460


>gi|291288102|ref|YP_003504918.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885262|gb|ADD68962.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 465

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 134/423 (31%), Gaps = 46/423 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH +   A  +GA+ +V SSA    +       +  I V+        L   +       
Sbjct: 59  GHRY-ENA--EGADVVVYSSAVRETNPELVCAKDNFIPVIKRGEMLAELMRLKYS----- 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A++G+ GK++  S V +I   +     ++ PT  +                     +
Sbjct: 111 --IAISGSHGKTTTTSMVAEILNAA-----KLDPTVVVGGILNTKDTN-----------A 152

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L S  V     + S           +       TN+  +H D ++  +         F 
Sbjct: 153 TLGSGNVIVAEADESDRSFLL-----MSPSVALVTNIDFEHPDTYRDLEDVKRT-FADFI 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTIS 294
             +P    A++  +D  + +++        R ++ G++    +H   V       Q  + 
Sbjct: 207 SRVPFYGSAVLCLEDDNTADLIPLIDR---RFVTYGFRAQADVHGVNVEQKGFSMQFDVI 263

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + G K        PGE  V NAL A  +     I    +   LE    V  R      + 
Sbjct: 264 ISGEKAGRIKLGFPGEHNVLNALGAIAVATQFDIPFRTIKRALEGFKGVQRRLTSRYDDG 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               +  DY H    ++  LK +R      +I+ +F                 A   AD+
Sbjct: 324 ECI-VMDDYGHHPTEIKTTLKAVRGAYPDKKILAIFQPHRYSRTAALMKEFATAFFDADM 382

Query: 413 AIVTDDNPRSE------DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +TD    SE      D E +  EI   G                  E      V++  
Sbjct: 383 LFITDIYAASEEKIDGVDSEAMVKEIKTRGFKNVKYIPGFDGIFEYLHEYGCDGTVMLTL 442

Query: 466 GKG 468
           G G
Sbjct: 443 GAG 445


>gi|162148962|ref|YP_001603423.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545285|ref|YP_002277514.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189028992|sp|A9H0J3|MURC_GLUDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161787539|emb|CAP57135.1| putative UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532962|gb|ACI52899.1| UDP-N-acetylmuramate/alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 480

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 140/427 (32%), Gaps = 48/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA  +VV+S    +D    + +   ++ V    + L+      +     
Sbjct: 59  GHD----AANLGAAQVVVTSTAVRRDNPEVVAARARLIPVVRRAEMLAELMRLRWA---- 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  + + + L    I     I ++  + R+ +   +       
Sbjct: 111 --VAVGGTHGKTTTTSLIAAVLEAARLDPTVING-GIIEAYGTNTRMGSGDWM------- 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RL  +       TN+  +H+D+  T +A   A    F 
Sbjct: 161 ----------VVEADESDGSFLRLPSV---ITVVTNMDPEHLDHWGTAEA-MQAAYDQFV 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    A++  D    ++++ R  +          Q   I  +KV          + V
Sbjct: 207 SNIPFYGFAVLCIDHPAVQQMIPRLSDHRIVTYGFSPQAD-IRAEKVITDKLGATFEVVV 265

Query: 296 EGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             ++         F  P+ G   V NAL A  + + + ID A +         V  RF  
Sbjct: 266 TNRNRNRTRRAGPFRLPMLGHHNVQNALAAIAVGVEMDIDDATLRSAFAGFRGVKRRFTR 325

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G    G  +  DY H    +  +LK  R   +  +I V                   ++
Sbjct: 326 TGETG-GITVIDDYGHHPVEIAAVLKAARQAGARDVIAVVQPHRYSRLQTLFGEFCTCMN 384

Query: 409 LADIAIVTDDNPRSED--PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDV 461
            A   IV D     E   P   R  ++ G+        +   +          +    D 
Sbjct: 385 DAGTVIVADVYAAGEAPIPGVDRDALVEGLRERGHRSVVPLPDPEHLAEMVHAIARPGDF 444

Query: 462 LVVAGKG 468
           +V  G G
Sbjct: 445 VVCLGAG 451


>gi|86160187|ref|YP_466972.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|118595640|sp|Q2IG29|MURD_ANADE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|85776698|gb|ABC83535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 462

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 130/420 (30%), Gaps = 58/420 (13%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
            D   F       GA+ +V S    L   +  A  R   P+             A+R  G
Sbjct: 63  HDAADFT------GADLVVASPGVPLANPEIQAARRRGVPVWGE-------VELAARFLG 109

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
             P  I+ +TGT+GKS+  +    +  R    +F  G   T                   
Sbjct: 110 GLP--IVGITGTNGKSTTTALTGALLARH-RRTFVGGNLGT------------------- 147

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS L   G    +            ++  +    +  N+  DH+D +    AY  AK 
Sbjct: 148 -PLSELVLSGEPAAAAVVELSSFQLEGIERFRARVAAVLNVTPDHLDRYPDVDAYAAAKA 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNK 288
           RLF    P +  A+  A D      +  A  +   + + G+          +        
Sbjct: 207 RLFATQEPDD-VAVANARDP---RALAMAGASRGDLHTFGFGAPVPASARDEGGEPGPGG 262

Query: 289 QQVTISVEGKDFD----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             +  +  G+  +        L G     NA+ A      +G+    V   L+    +  
Sbjct: 263 TAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAFPGLHH 322

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V        +    A   +S  + L           +V+   G  +     P+   
Sbjct: 323 RLELVAEGRGVEWVNDSKATNVDSTFVGLAAFPAGAP--RVVLIMGGRGKKAPYAPLRPL 380

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  +  + +D P  E       ++    P     G+   A+R A  +    DV+++
Sbjct: 381 FGGRVKALLTIGEDAPAIERE---LGDLAPTEP----CGDLPGAVRRAAVLSGPGDVVLL 433


>gi|302344984|ref|YP_003813337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
 gi|302150055|gb|ADK96317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
          Length = 443

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 129/362 (35%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 94  EFAGRYTN---SKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 --------SLALQVAEDPHEYYIIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDYK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y +AKMR+ +    ++S      D    KE+ K   +A C   S   +   I   + 
Sbjct: 190 FENYADAKMRIIQNQTKEDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKEKGSIGYIEE 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +Q    ++E +D      L G   +YN+L A       GI    + + L     V
Sbjct: 250 GQYTIEQPEPFNMEQED----LSLTGRHNIYNSLAAGIASDISGIKKENIRKSLSDFPGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V   +    I    A   ++    L+++RT T     ++   G D+      I 
Sbjct: 306 EHRLEKVCKVAGVQYINDSKATNVDACWYALESMRTPT-----ILIIGGKDKGNDYNSIK 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A I  +  DN +  D      ++  G+P   +  +  + +    E+    D +
Sbjct: 361 DLVKQKCAGIVYLGADNKKLHDN---FDDL--GLP-IRDTHSMKDCVAACAELAKPGDTV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|329964558|ref|ZP_08301612.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
 gi|328524958|gb|EGF52010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
          Length = 466

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 135/362 (37%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+   +G    I S        
Sbjct: 116 EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGS-------- 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++++   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 162 --------SLALQVATEKHDYYIIELSSFQLDN--MYKFRANIAVLMNITPDHLDRYDHC 211

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P ++      D    +E+ K    A     +   +   I   + 
Sbjct: 212 MQNYVDAKFRITQNQTPDDAFIYWNDDPIIKRELAKHGLKAHLYPFAAVKKDGVIAYVED 271

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +   + +  ++E ++      L G   +YN+L A       GI    + + L     V
Sbjct: 272 GEVEINEPIAFNMEQEE----LALRGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGV 327

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V T  RG +   D   T+  +      ++++T+    V+   G D+      I 
Sbjct: 328 EHRLEKVAT-VRGVQFINDSKATN--VNSCWYALQSMTTKT--VLILGGKDKGNDYTEIE 382

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +  + + +  +   N   E   +    +  G+P    +    +A+  A  +  K + +
Sbjct: 383 DLVRKNCSGLVYLGLHN---EKLHEFFDRM--GLPVADVQTGMKDAVDAAFRLAKKGETV 437

Query: 463 VV 464
           ++
Sbjct: 438 LL 439


>gi|254719461|ref|ZP_05181272.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella sp. 83/13]
 gi|265984467|ref|ZP_06097202.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. 83/13]
 gi|306839240|ref|ZP_07472057.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. NF 2653]
 gi|264663059|gb|EEZ33320.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. 83/13]
 gi|306405787|gb|EFM62049.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. NF 2653]
          Length = 471

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 134/421 (31%), Gaps = 49/421 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IVVS+A    +          + VV        L   R         +A+ GT GK+
Sbjct: 67  AEVIVVSTAIKKNNPELVAAREKLLPVVRRAEMLAELMRFR-------RAVAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    +   +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSLAAALLD-AGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++    A   A  R F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF------ 300
            D    + ++ R  +   R+++ G   +                  + +  +        
Sbjct: 218 LDHPEVQALVSRIEDR--RIITYGSNPQAEVRFINQRMDGAASLFDVVIRSRKGEATEIK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NA  A  +   +GI S  +   L     V  RF   G+   G  I+ 
Sbjct: 276 DLRLPMPGLHNVSNATAAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTGSW-NGVEIFD 334

Query: 361 DYAHTSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           DY H    +  +LK  R       GR++ +                    + AD  IV  
Sbjct: 335 DYGHHPVEIRAVLKAAREATSQAGGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVAP 394

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGHE 470
                E+P      E++ + I              EA+   +  +    D +V  G G+ 
Sbjct: 395 VYTAGEEPIEGVNSEELVSRIKTAGHRDAHYATGPEALAPLVASIAQAGDFVVCLGAGNV 454

Query: 471 T 471
           T
Sbjct: 455 T 455


>gi|49474455|ref|YP_032497.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella quintana str.
           Toulouse]
 gi|59798260|sp|Q6G125|MURC_BARQU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49239959|emb|CAF26364.1| UDP-N-acetylmuramate--alanine ligase [Bartonella quintana str.
           Toulouse]
          Length = 475

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 137/416 (32%), Gaps = 45/416 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +V+S+A    +          + +V        L   R         +AV GT GK+
Sbjct: 67  AEVVVLSTAIKKTNPEYIAAKEKHLPIVRRAEMLAELMRFR-------RAIAVGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +   +G     +     I+++  + R+ +   + +    S            
Sbjct: 120 TTTSMIAALLD-AGRFDPMVINGGIINAYGTNARMGSGDWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+ R+H+D++ +  A   A  R F E +P    A++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDREHLDHYGSFCAVREA-FRQFVENVPFYGFAVLC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDF- 302
            D    + +  R  +          Q     L  +     K    + +     GK+ +  
Sbjct: 218 LDHPEVQSLASRIDDRWVITYGTNPQADIRFL-NLSMDGQKTHFDVFIRSRKTGKETELK 276

Query: 303 --LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             + P+ G+  V NA  A  +   +GI +  + + L +   V  RF   G+  RG  I+ 
Sbjct: 277 NLVLPMSGQHNVSNATAAIAIAHELGISNESIKKGLAEFGGVKRRFTQTGSW-RGIEIFD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    ++ +L   R    GR+I +                    + AD  ++     
Sbjct: 336 DYGHHPVEIKAVLYAARESAKGRVIAIVQPHRYSRLYHLFDDFAACFNDADTVLIAPIYG 395

Query: 421 RSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E P       ++   I + G           + +          D +V  G G+
Sbjct: 396 AGEAPIAGFGARELVEHIKMAGHRDVRLIHCLEDVVLIVSTFAKPGDYVVFLGAGN 451


>gi|315656825|ref|ZP_07909712.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492780|gb|EFU82384.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 499

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 86/421 (20%), Positives = 136/421 (32%), Gaps = 52/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AIVV ++   +D     R+    L + +  + L          H   ++AV G  GK+
Sbjct: 82  ANAIVVVTSAIHEDNPEAARAKALGLEIWHRSQAL----DFCTRSH--ELVAVAGAHGKT 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S +S +       G           I     D      +   L    +++     +  S 
Sbjct: 136 STSSMMAHALLDIGADPSFA-----IGGIIADL----GTGARLGSGSAFVIEADESDGSF 186

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S                  TN+  DH+D+  +  A+  A    F   L K    ++ 
Sbjct: 187 LNYS------------PAVEVITNIEPDHLDHWGSSAAFEQA-FVNFTGRLRKGGTLVLC 233

Query: 248 ADDAYSKEVMKRAHNAG----CRVLSVGY----QGKFI---HLKKVCAIHNKQQVTISVE 296
           ADDA  K + ++    G     RV+S G+     G  +   H  ++     + QVTI+  
Sbjct: 234 ADDAGVKRLAEQVSERGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDA 293

Query: 297 GKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           G+          + G+  + NA  A G    +G+D    +  L        R + VG   
Sbjct: 294 GQQVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVG-ER 352

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G RIY DY H    +   L+  R +   GR++V F                      D 
Sbjct: 353 DGVRIYDDYGHHPTEIAATLQAARDLAGKGRLLVCFQPHLYSRTYHNVDAFARVFATVDD 412

Query: 413 AIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             V       E P       I   I   +       +   A   A       D L+  G 
Sbjct: 413 LTVCSVYAAREAPIPGVNGNI---ITEHLGKGTYVADMYAAGLHAFRAARPGDFLLFLGA 469

Query: 468 G 468
           G
Sbjct: 470 G 470


>gi|291530397|emb|CBK95982.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium siraeum 70/3]
          Length = 461

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 132/411 (32%), Gaps = 42/411 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV ++A    +        + +  V+   + L L  S          + V+GT GK
Sbjct: 67  GADLIVYTAAIMSDNPELIAAKASGVKTVERC-ELLGLVTSWYN-----KAVCVSGTHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++ +S +  +     +    +  G    I                 A +   +  +    
Sbjct: 121 TTTSSMLTHMYLAQNIDLSTVIGGKLKAIGG------------SGRAGSSDVMVCEACEF 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                       +    +        N+  DH+D+ +T      +  +  +         
Sbjct: 169 S-----------NTFLHLFPNISIILNIDADHLDFFKTMDNLRASFTKFCDN---TTDIL 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEGKDFD- 301
           ++  DD  +   +K A     ++++ G   K  +  +        +    +   G   + 
Sbjct: 215 VVNGDDENTMRAVK-ASGFDKQIITFGKTDKNRYYPENIKRISDFQTDFDLMENGNKIER 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   V NA+ A    +A G+    + + L        RFE + T   G  +  D
Sbjct: 274 ISIHVPGAHNVLNAVAACAAALATGVTPENINKGLSTFWGAGRRFERLATIG-GITVVDD 332

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH    +   LK  + +    R+  V                  AL++AD  ++T+   
Sbjct: 333 YAHHPAEVAATLKTAKAMQDFKRVWAVHQPFTYSRTYTLMDDFASALEIADKVVLTEIMG 392

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E        A++   IPG        E  R   +     D+++  G G 
Sbjct: 393 SREKNTYNVYSADLAAKIPGCKWFPTFEEVARYVADNAESGDMIITLGCGD 443


>gi|55820797|ref|YP_139239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMG 18311]
 gi|55822698|ref|YP_141139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus CNRZ1066]
 gi|62900662|sp|Q5M0D5|MURD_STRT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900663|sp|Q5M4Y2|MURD_STRT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|55736782|gb|AAV60424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus LMG 18311]
 gi|55738683|gb|AAV62324.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus CNRZ1066]
 gi|312278122|gb|ADQ62779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus ND03]
          Length = 450

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 150/428 (35%), Gaps = 63/428 (14%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           DG  F         + +G + +       L D +  +    P +  DN      + A  L
Sbjct: 39  DGKAFEENPSAQSLLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNP-----MVARAL 93

Query: 110 YGKHP-------------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
             + P               I+ +TG++GK++  + +  +    G S    G    I   
Sbjct: 94  EKEIPVWTEVELAYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSG---NIGFP 150

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
           A +   +  +   L   LS     G                 ++         TNL   H
Sbjct: 151 ASEVAQSVTNQDTLVMELSSFQLMG-----------------IESFHPHIAVITNLMPTH 193

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           IDYH + + Y  AK  + +  +  +   I+  +   +KE+  + +       +V  +   
Sbjct: 194 IDYHGSFEEYVAAKWNI-QNEMTSDDFIILNFNQDLAKELATQTNAQVVPFSTV--EKVD 250

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               +   ++ K ++ +  +         +PG   V NAL    +    G+ +  + E L
Sbjct: 251 GAYLENGGLYFKGELLMHAD------ELGVPGSHNVENALATIAVAKLSGVSNQAIKETL 304

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                V  R +FV T     + Y D   T+  +    K +        +++   G DR  
Sbjct: 305 SSFGGVKHRLQFVDT-IDDVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGN 360

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++  I   L  + I+ +  PR +     RA    G+  +++  +  +A R A E  
Sbjct: 361 EFDELIPDI-TGLKKMVILGESAPRVK-----RAADKAGVT-YLDAKDVADATRIAFEQA 413

Query: 457 NKQDVLVV 464
           +  DV+++
Sbjct: 414 SAGDVVLL 421


>gi|304383924|ref|ZP_07366381.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
 gi|304335002|gb|EFM01275.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
          Length = 443

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 129/351 (36%), Gaps = 37/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G   + +G    I +                   
Sbjct: 102 AKMVCITGSNGKTTTTSLIYHIFREAG---YDVGLAGNIGN----------------SLA 142

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRL 233
             ++        +E SS  LD   +   +       N+  DH+D +    Q Y NAKMR+
Sbjct: 143 LQVAEDPHAFYIIELSSFQLDD--MFDFRANIAILLNITPDHLDRYDHCMQNYVNAKMRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +    ++S      D    +E+ K    A     S   +   I   +      ++    
Sbjct: 201 LQNQTEEDSFIFWNDDPIIKRELQKYDIKAMQYPFSELKENGSIGYIEEGRYTLEEPTPF 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++E ++      L G   +YN+L A       GI   ++ + L     V  R E V    
Sbjct: 261 NMEQEE----LSLTGRHNIYNSLAAGIAGSIAGIKKDVIRKSLSDFPGVEHRLEKVV--K 314

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            GG  Y++ +  +N ++     + ++ +  I+++   G D+     PI   +      + 
Sbjct: 315 VGGVQYINDSKATN-VDACWYALDSMRTPTILII--GGKDKGNDYEPIKALVKEKCVGLV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN +  D       +  GIP   +  +  E +     M    D +++
Sbjct: 372 YLGADNSKLHDN---FDHL--GIP-VRDTHSMKECMEACYAMARPGDTVLL 416


>gi|255010087|ref|ZP_05282213.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147882|ref|ZP_07810075.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136649|gb|EFR54009.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 444

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 137/384 (35%), Gaps = 37/384 (9%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPLILKLKEQGTPIISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+    G                            ++ +   +  +E SS  LD   +  
Sbjct: 129 LNVGLAGNIG-------------------KSLALQVAEEEHDYYVIELSSFQLDN--MYK 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y NAK R+ +    +++      D    +E+ K  
Sbjct: 168 FRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     S   +   I   +   +     +  ++E +       L G+  +YN+L A  
Sbjct: 228 ICAHLYPFSAIKEEGSIAYVEDHEVVITAPIAFNMEQE----QLALTGQHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    +   L     V  R E V    RG     D   T+  +      ++++T
Sbjct: 284 SANLAGITKENIRRALSDFQGVEHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           +    V+   G D+      I   +    + +  +   N   E   +    +  G+P   
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEELVREKCSALVYLGLHN---EKLHEFFDRL--GLPVAE 393

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            +    +A+  A ++  K + +++
Sbjct: 394 VQTGMKDAVEAAYKLAKKGETVLL 417


>gi|169634770|ref|YP_001708506.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           SDF]
 gi|229470259|sp|B0VNZ8|MURC_ACIBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169153562|emb|CAP02734.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii]
          Length = 482

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 85/432 (19%), Positives = 147/432 (34%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I   A  +VVS+A   ++          I +V    + L       +G    
Sbjct: 73  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRIPIVRRA-EMLGELMRYRHG---- 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +          + PT  I                +  AL 
Sbjct: 125 --IAVAGTHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAALG 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                       +AS           ++ +A   TN+  DH+D ++            F 
Sbjct: 170 ESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFL 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DDA  +E++ R       V++ G+ +   I    V     +   T+ 
Sbjct: 222 HNLPFYGLAVVCGDDANIREILPRVGRP---VITYGFNEDNDIRAIDVERDGMRSHFTVL 278

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G   
Sbjct: 279 RKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFE 338

Query: 354 RG---GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            G    ++  DY H    +E  +K  R +    R++++F                  L  
Sbjct: 339 LGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQ 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE------------MLN 457
            D  ++ +  P  E P  I       +   I    ++E I   I+            +L 
Sbjct: 399 VDQLLLLEVYPAGEKP--IVGADSRTLARSIRLRGQVEPI--LIDPVEGNLQNIMQNVLQ 454

Query: 458 KQDVLVVAGKGH 469
             D+L+  G G+
Sbjct: 455 PNDLLLTQGAGN 466


>gi|157151093|ref|YP_001449974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|189082919|sp|A8AW14|MURD_STRGC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157075887|gb|ABV10570.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 450

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 126/350 (36%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + Q+    G +    G     +S    +              
Sbjct: 112 APIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQSAC------------ 159

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G   + +E SS  L    ++         TNL   H+DYH + + Y  AK  + 
Sbjct: 160 ------GKDTLVMELSSFQLM--GIEAFHPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQ 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + +   +   + +  D ++K +  +         +          K   A  +   +T  
Sbjct: 212 KNMTADDYLVLNFNQD-WAKGMASQTQATVVPFSTTE--------KVDGAYLDGDVLTFR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    GID+  + E L     V  R ++VG  + 
Sbjct: 263 GEAIIKVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNE 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               + + + ++N L    K +        +++   G DR      ++  +   L  + I
Sbjct: 323 --VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLKG-LKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    PR +     RA    G+  +++  +  +A   A  +    D++++
Sbjct: 378 LGQSAPRVK-----RAADQAGV-SYLDATDVRDAAHKAFALAEPGDIVLL 421


>gi|37523895|ref|NP_927272.1| cyanophycin synthetase [Gloeobacter violaceus PCC 7421]
 gi|35214901|dbj|BAC92267.1| cyanophycin synthetase [Gloeobacter violaceus PCC 7421]
          Length = 876

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 127/359 (35%), Gaps = 34/359 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +  GL    +G T+T   + Q+  +          A   L    V    +E + 
Sbjct: 501 LIAHILRGIGLR---VGFTTTDGVYIQNQMVMKGDMTGPFSAKLVLKDPTVEAAVMETAR 557

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L           N+  DH+      T +     K  + E + P +   ++ AD
Sbjct: 558 GGILREGLGFPVCDIAVVLNVTADHLGLKGVETLEDLARVKSVVPESVHP-DGFVVLNAD 616

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------ 297
           D     V   AH+A   V       +   ++       + A+  +  V+I ++G      
Sbjct: 617 DEL---VADMAHDAKAPVSYFSLDPQSPLIQDHVSRGGIAAVFEEGHVSI-LKGAWKLRV 672

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTN 352
               +          F + N L A       GI    +   L      P +        +
Sbjct: 673 ERVVNIPLTLSGRAVFMIQNVLAATLAAFLHGIKIDDIRAGLGSFVPSPAQTPGRLNVFD 732

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAH     E I + +  + + R I V G  GDR       +G +A  + D 
Sbjct: 733 VNGFEVIVDYAHNPAGYEAIQQVLERMDNPRKIGVIGGPGDRRDEDLRKLGYLAAGMFDA 792

Query: 413 AIV-TDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AIV  DD+ R   P++  + I+ GI        F    +  EA+  A+      D++V+
Sbjct: 793 AIVKEDDDRRGRAPDEAASLIVEGIKQRNPEFPFQTILDEAEAVEHALRNAACSDLVVI 851


>gi|219670075|ref|YP_002460510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfitobacterium hafniense DCB-2]
 gi|254766050|sp|B8FT58|MURD_DESHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219540335|gb|ACL22074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfitobacterium
           hafniense DCB-2]
          Length = 454

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 115/323 (35%), Gaps = 23/323 (7%)

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ALS           + A         +D + +  G   N+  DH+D H T + Y  AK R
Sbjct: 145 ALSDQVENLDEEGIIVAELSSFQLELVDSLCMNVGILLNVTPDHLDRHGTLENYLAAKAR 204

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +FE+  P +  AI+  DDA  +E+   A +   RV+          L          ++ 
Sbjct: 205 IFEKQRPSD-CAILNWDDARVREL---APHLKARVVFFSPTS----LLAEGYGVQGDEIV 256

Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           ++ +GK    +      L G   + N + +      +G+    + + L +   V  R E 
Sbjct: 257 LARDGKITPIIKRRELQLRGNHNLENIMASIAAVRELGLSWEEIAQGLREFKGVEHRQEV 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VGT      I        ++ E  L           IV+   G ++       M  +   
Sbjct: 317 VGTYEGILFINDSKGTNPDAAEKALYAFEE-----PIVLIAGGKNKGLDFHDFMKTVKEQ 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  + +V       E   K       GI  ++      EA+  AI      +V++++   
Sbjct: 372 VKSLVLVGSAAAEMEQAAK-----DTGIRHYLRAETFAEAVELAIAEAEPGNVVLLS-PA 425

Query: 469 HETVHIVTNGEKKMSVDCDIIRE 491
             +  +  + E++     +++R 
Sbjct: 426 CTSWDMFKSYEERGEFFKELVRR 448


>gi|307944893|ref|ZP_07660230.1| UDP-N-acetylmuramate--alanine ligase [Roseibium sp. TrichSKD4]
 gi|307771817|gb|EFO31041.1| UDP-N-acetylmuramate--alanine ligase [Roseibium sp. TrichSKD4]
          Length = 471

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 130/415 (31%), Gaps = 45/415 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVSSA    +          I VV        L          +  +AV GT GK+
Sbjct: 67  AEVVVVSSAIKKDNPELVAAREKLIPVVRRAEMLAELMRF-------KQAIAVGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+                      + V
Sbjct: 120 TTTSMVAALLD-AGNLDPTVINGGIINAYGTNARMGEG-----------------PWMVV 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA            +       TN+  +H+D++   +    A  R F E +P    A++ 
Sbjct: 162 EAD---ESDGTFVKLPADIAIVTNIDPEHLDHYGDFEGVKAA-FRQFIENVPFYGFAVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------- 300
            D    + ++    +          Q    +   V     K   ++++  +         
Sbjct: 218 LDHPEVQTMVGTIEDRRIVTYGTNLQADVRYY-DVSMDGGKSIFSVTIRDRRTGEDIVLE 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + + P+PG   V N   A  +   +G+    +   +     V  RF   G +  G  +Y 
Sbjct: 277 NLVLPMPGLHNVSNVTAAIAVASQLGVKPEDIKAGIAGFGGVKRRFTHTG-SVDGVHVYD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    ++ +L   R  T G+++ V                    + AD  IV     
Sbjct: 336 DYGHHPVEIKAVLHAARQSTKGKVVAVVQPHRYTRLQSLFDDFSSCFNDADQVIVAPVFA 395

Query: 421 RSEDP--EKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E P       ++  G+            +  E       +    D ++  G G
Sbjct: 396 AGEQPIDGASHHDLASGLKTRGHRAVQTIEDPSELAGMIAGVAEPDDFVICLGAG 450


>gi|146276742|ref|YP_001166901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166224764|sp|A4WQD2|MURD_RHOS5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145554983|gb|ABP69596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 465

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 141/438 (32%), Gaps = 52/438 (11%)

Query: 69  EAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121
            A++V+S      Y   +          + V ++   F   FA+R +    +   ++ VT
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GKS+  + +  I   SG  +   G                         L    ++ 
Sbjct: 127 GSNGKSTTTALIHHILAESGRPTQMAGNIG-------------------RGVLDLDPARD 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P  
Sbjct: 168 GEVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDR 225

Query: 242 SPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----V 295
           +   +  D+     +  +        RV+ +    K                       +
Sbjct: 226 AVIGV--DEPEGLYLAGQLSVAPEDDRVIRISAGQKLERFGWAVFARKGFLAEWRKGRQM 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D   +  LPG     NA  A   C  +G+    + E L     +P R + VG  +  
Sbjct: 284 ASIDLRAMPGLPGAHNHQNACAAYAACRTLGLAPRQIEEALGSFKGLPHRSQLVGERNGV 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +    A   +S    L+    I           G  +D G   +   +   +    I 
Sbjct: 344 RFVNDSKATNVDSAAKALQAFPKIRW------IAGGLGKDGGIAALRPHLDAVVKAYLI- 396

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                          ++        E  +R  A+  A E     +V+++A     +    
Sbjct: 397 ------GHSARDFALQMGATDHEICETMDR--AVVRAAEEAQPGEVVLLA-PAAASFDQY 447

Query: 476 TNGEKKMSVDCDIIREIL 493
            N EK+     + ++ +L
Sbjct: 448 PNFEKRGEDFMERVKALL 465


>gi|28210045|ref|NP_780989.1| cyanophycin synthetase [Clostridium tetani E88]
 gi|28202480|gb|AAO34926.1| cyanophycin synthetase [Clostridium tetani E88]
          Length = 874

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 136/364 (37%), Gaps = 43/364 (11%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   +G  +   G TST   +   N +          AL+ L+++ V  + +E + 
Sbjct: 492 LIAHIFDLAGYKT---GFTSTGGIYIDGNIIDEGDTTGYNSALTLLTNKEVEAIVLETAR 548

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G  TN+  DH  +D   T +     K  L  E +  E   ++ AD
Sbjct: 549 GGIIKKGLAYDLADVGVITNITTDHLGLDGIDTLEDLAYVKS-LIGEAVKDEGYVVLNAD 607

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL------ 303
           D  S +++ R  +            K  + K +    NK    I V              
Sbjct: 608 DVMSMKIINRIKSNVILF------SKDKNNKFIREYLNKGCFAIYVHEGYMYIEKDNKII 661

Query: 304 -----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEF 348
                           ++ + NA+ A  + I++GI+   + + +E      + +PGRF  
Sbjct: 662 PLININNIKIGLQGKLDYNIENAMAACAVGISMGINPIYIRKAMESFNLDENYIPGRFNI 721

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                R   I +DY H +     ++K  + +   R+I V G  GDR+      +G+I   
Sbjct: 722 YSFKDR--TIILDYGHNAEGYNAVIKGAKKLKHNRLIGVIGAPGDRNDEHLIKLGEIGGK 779

Query: 409 LADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQD 460
             D   + +D + R+     +   +  GI       + I       +A++ AI+   K D
Sbjct: 780 NFDYIYIKEDKHNRTRKKGDVAKLLKTGILNTGFNKDNIKIILKEEDALKEAIKYSKKGD 839

Query: 461 VLVV 464
           ++V 
Sbjct: 840 LIVT 843


>gi|240118594|ref|ZP_04732656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID1]
 gi|268604305|ref|ZP_06138472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
 gi|268588436|gb|EEZ53112.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
          Length = 445

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 164/424 (38%), Gaps = 54/424 (12%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQSDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T          
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT---------- 147

Query: 163 TTPSPIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                       + L  +G       +E SS  L+    + ++  A +  N+  DH+D +
Sbjct: 148 --------PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVMNISEDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y + K  +F      +   ++ ADD + + + +       +  S+ ++  F   +
Sbjct: 198 DDLLDYAHTKAEIFRG----DGVQVLNADDVFCRAMKRAGRE--VKRFSLEHEADFWLER 251

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +    +  IS +        PL G     N + A  LC A+G+    +LEH++   
Sbjct: 252 GTGCLKQGNEDLISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P
Sbjct: 306 GLPHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTP 360

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +      + ++  D P      +IR ++        +     EA++TA       D
Sbjct: 361 LRDALKDKAKGVFLIGVDAP------QIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGD 414

Query: 461 VLVV 464
           ++++
Sbjct: 415 IVLL 418


>gi|121593081|ref|YP_984977.1| cyanophycin synthetase [Acidovorax sp. JS42]
 gi|120605161|gb|ABM40901.1| cyanophycin synthetase [Acidovorax sp. JS42]
          Length = 861

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 148/403 (36%), Gaps = 38/403 (9%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N  + +VD       LFA    G+ P  ++AVTGT+GK++    + Q+    GL    
Sbjct: 450 PRNVGVPMVD------ELFAPGQDGRIP--LVAVTGTNGKTTTTRLIGQLFAAHGLR--- 498

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +G T+T   +    ++ +        A + L    V    +E +  G+ +  L   +   
Sbjct: 499 VGMTNTDGVYVNGRQIDSGDCSGPKSARNVLFHPEVDAAVLECARGGILREGLGFDRCQV 558

Query: 207 GSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM------ 257
              TN+G  DH+   +  T +     K R+  + +  +   ++ A D +   +       
Sbjct: 559 AVVTNVGAGDHLGLNFITTVEDVAVLK-RVIVQNVAADGYGVLNAADPHVAAMASVCPGK 617

Query: 258 ------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                  R H       + G +  ++    + A     + TIS+  ++          FQ
Sbjct: 618 VIFFAADRHHPVMATHRAQGNRVVYVDGDSIVAAEGSWRETISL--REIPITRGGTIGFQ 675

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSL 369
           V N + A G    +G+    +   L             F   + RG  +  DY H  +++
Sbjct: 676 VENVMAAIGAAWGVGLPWQTIRRGLAGFMNDSDNAPGRFNVMDYRGATVIADYGHNPDAM 735

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI 428
             +++ ++ + + +  VV    GDR         +I     D  ++  D   R     ++
Sbjct: 736 RALVQAVQAMPARQRSVVISGAGDRRDQDIVEQTQILGQSFDDVVLYQDACQRGRADGEV 795

Query: 429 RAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A +  G+ G        E      AI  A+E L   D+ +V 
Sbjct: 796 LALLRQGLQGAPRTRYVTEIHGEFLAIDHALERLQPGDLCLVL 838


>gi|332362875|gb|EGJ40668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK49]
          Length = 459

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 124/350 (35%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + Q+    G +    G    I   A     T  S   L   L
Sbjct: 121 APIVGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASSKDTLVMEL 177

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 ++ +       TNL   H+DYH + + Y  AK  + 
Sbjct: 178 SSFQLMG-----------------IEALHPQIAVITNLMPTHLDYHGSLEDYAAAKWNIQ 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + +   +   + +  D ++KE+  +         +          K   A      +T  
Sbjct: 221 KNMTADDYLVLNFNQD-WAKEMASQTQATVMPFSTTE--------KVDGAYLEGDVLTFR 271

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    GID+  + E L     V  R ++VG  + 
Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGRVNE 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               + + + ++N L    K +        +++   G DR      ++  +   L  + I
Sbjct: 332 --VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLKG-LKKMVI 386

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    PR +     RA    G+  +++  +  +A   A       D++++
Sbjct: 387 LGQSAPRVK-----RAADQAGV-SYLDATDVQDAAHKAFAQAEPGDIVLL 430


>gi|319900364|ref|YP_004160092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
 gi|319415395|gb|ADV42506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
          Length = 444

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 141/384 (36%), Gaps = 37/384 (9%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++    ++ +TG++GK++  S +  I + +G
Sbjct: 69  SPGIPNDAPLILKLKEKGTPVISEIEFAGRYTDAKMVCITGSNGKTTTTSLIYHIFKSAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+   +G    I +                     ++++   +  +E SS  LD   +  
Sbjct: 129 LN---VGLAGNIGN----------------SLALQVATEKHDYYIIELSSFQLDN--MYR 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y +AK R+     P ++      D    +E+ K  
Sbjct: 168 FRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITRNQTPDDAFIYWNDDPIIKRELAKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     +   +   I   +   I     +  ++E ++      L G   +YN+L A  
Sbjct: 228 LKAHLYPFASVKEDGAIAYVEDGEIEINAPIAFNMEQEE----LALRGTHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI+   + + L     V  R E V  + RG     D   T+  +      ++++T
Sbjct: 284 SANLAGIEKEYIRKALSDFKGVEHRLEKV-CDVRGIHFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           +    V+   G D+      I   +    + +  +   N   E        +  G+P   
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEDLVREKCSALVYLGLHN---EKLHGFFDRL--GLPVAD 393

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            +    +A+  A  +  K + +++
Sbjct: 394 VQTGMKDAVDAAFRLAKKGETILL 417


>gi|309812672|ref|ZP_07706416.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
 gi|308433367|gb|EFP57255.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
          Length = 479

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 143/416 (34%), Gaps = 46/416 (11%)

Query: 67  GAEAIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           GA  ++ S+      +     R   P+L   +  + L++      G      LAV G +G
Sbjct: 80  GAVVLISSAINEANPELVEVRRRGLPVL---HRSQGLAMLMRAGRG------LAVAGANG 130

Query: 126 KSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +         +G    F IG  + ++    +        I++ +A     S  V H
Sbjct: 131 KTTTSGMATAALVAAGEKPSFAIG--ANVAGLGVNAAPGEGE-IFVVEADESDGSFVVYH 187

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                    TN+  DH+D++ T      A    F   +  +   
Sbjct: 188 -------------------PQVAIVTNIKDDHLDFYGTSANLARA-YETFAATIAPQGLL 227

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +  ADD  S  + +R   AG RVL+ G      + +          ++++       D  
Sbjct: 228 VACADDEGSLALAQRRRAAGARVLTYGRDTDADVRIVAESGEGFDWRMSLRDGDAVHDVA 287

Query: 304 FPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             +PG   + NA      L    G+  A V   L        RFE  G    G R+  DY
Sbjct: 288 LHVPGAHNLLNAAGVYTALVHGFGLAPADVARGLGAFRGTSRRFEPRGEAG-GVRVVDDY 346

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH    L+ +++    +   G +IV+F                 ALD AD A V D    
Sbjct: 347 AHNPGKLDALVRTAAGLKDDGELIVIFQPHLYSRTQHAATGLAAALDGADHAFVLDVYGA 406

Query: 422 SEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            E P        I   +  G   F    +  +A+   +++    D++V  G G  T
Sbjct: 407 REQPVAGVSGALITDRMTSGRGEFTPTAD--DALARVLDVARPGDLVVTVGAGDVT 460


>gi|257784286|ref|YP_003179503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
 gi|257472793|gb|ACV50912.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
          Length = 478

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 155/452 (34%), Gaps = 45/452 (9%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR +Q G +FVA  G K +G+ ++  A   GA  +V S   +     +   +   +L 
Sbjct: 31  IDSREVQQGSLFVAFAGEKVNGNSYLLSAAQAGAAVVVASEPVTDNLLDSLAATGASVLE 90

Query: 95  VDN---TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGLSS 144
             +       L+L A+         ++ VTG+ GK++    +       +++   +G  +
Sbjct: 91  AADDDCEAFLLALAAAWREAHPNWLVVGVTGSVGKTTTKEMLRRGIGATRRVHATAGNHN 150

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG   T+ S  +D                      V  + +  +  G         + 
Sbjct: 151 NLIGLPLTVLSTPEDTE--------------------VLVLELGMNHAGEITRLTSVARP 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY----ADDAYSKEVMKRA 260
                TN+G  HI    +++    AK  +   +    S         A D       K A
Sbjct: 191 TVAVITNVGTSHIGLLGSRKNIARAKAEIVSGMRAFGSIEPTLIQASAGDYTKFIADKFA 250

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALV 317
             A     +VG     +   +   +  K   T ++    G        +PG   V + L+
Sbjct: 251 RPARVVCKTVGATEDDVMSAQKVILDEKGLPTATISASSGWSRTVTLEVPGRVVVDDLLL 310

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A      +G+D     E +E++     R   V   + G +I  D Y  + NS    L  +
Sbjct: 311 ALEAVETLGLDLDAAAEAIEQMPATRMRLS-VLDATCGAKIIDDSYNASPNSTAAALDVL 369

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVTDDNPRSEDPEKIRAE 431
             + + GR I + G  G+    ++ + G     IA    D           E  E     
Sbjct: 370 MQMPAEGRRIALIGEIGELGPEEKRLHGYVGAYIAAKNPDFVAFVGTGAAREMVEA-ARV 428

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +        +  +  EA+     +L + DVL+
Sbjct: 429 MGFSEDKIEQFNDVNEALAVLGPVLKQGDVLL 460


>gi|258593041|emb|CBE69352.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [NC10 bacterium 'Dutch sediment']
          Length = 568

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 128/379 (33%), Gaps = 37/379 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+F +  A+    ++P  ++ +TG+ GK++       +         +     T      
Sbjct: 200 RRFYAQ-ATARMRRYPGEVIGITGSYGKTTTKFITAALL------HGRYPVFKTPDGVNT 252

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              +       L     +   +      V A   G  +   + ++   G  T +G  H++
Sbjct: 253 TMGIVRVVREGLRDDHRFFVVE------VAAYGPGEIREVCEVLRPRIGILTAVGVQHLE 306

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              T +    AK  L + L P +  AI+ ADD     + +RA   G RVL  G       
Sbjct: 307 RFGTPERIAEAKYELIDSL-PPDGLAIVNADDPVCLRLAERARQEGRRVLLYGIGEDERA 365

Query: 279 L----KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           L    K V          +        F   L G + + N L A    +  G+    +  
Sbjct: 366 LGVRGKDVTLSSKGSAFRVETGHGAAMFETRLLGGWNIGNILGATAAALECGVPLEEIAA 425

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +  L   P R E +       ++           +M L+ +     G  I++     + 
Sbjct: 426 GVRALAPAPKRLE-IREEGGVIKLIDVANANPRGAQMALEVLSQFEGGSKILITPGLVEL 484

Query: 395 DQGKRPI---MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
            Q +      +G+ A  + D  ++         P++    +  G+      G+R+   R 
Sbjct: 485 GQIEAEENRRLGRAAAAVCDYVVLVG-------PQQ-TQPLQEGLREAGFSGSRVLIARH 536

Query: 452 AIEMLN-------KQDVLV 463
           A E+ +       + DVL+
Sbjct: 537 ADEVADCLKAIVCEGDVLL 555


>gi|209696051|ref|YP_002263981.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
 gi|226706336|sp|B6ELH4|MURC_ALISL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|208010004|emb|CAQ80327.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
          Length = 487

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 83/464 (17%), Positives = 162/464 (34%), Gaps = 60/464 (12%)

Query: 21  FPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + +   +   N V+   R  + G  IF         GH      + + A  +VVS+A   
Sbjct: 47  YHISGSDVAENSVTV--RLAEKGADIFF--------GHH--ASNVEK-ASVVVVSTAIDQ 93

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +          I V+    + L+      +G      +AV GT GK++  +   QI   
Sbjct: 94  ANPEIVAAKENRIPVIRRA-EMLAELMRYRHG------IAVAGTHGKTTTTALTTQIYSE 146

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +GL    +     + +   + R    S  +L   ++       + +              
Sbjct: 147 AGLDPTFVNG-GLVKNAGTNAR--LGSSRFL---IAEADESDASFL-------------- 186

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH+D +             F   LP    A++  DD   +E++ R
Sbjct: 187 -HLQPMVSIVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGQAVMCIDDDVVRELLPR 245

Query: 260 AHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317
                 +V++ G+     + L        K   T+  + + D D +  +PG+    NA  
Sbjct: 246 VSR---QVITYGFSDDADVRLINYRQEGQKSFFTVQRKDRTDLDIVLNIPGKHNALNATA 302

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILK 374
           A  +     ++ + +L  L        RF+ +G   T +    +  DY H    +++ +K
Sbjct: 303 AIAVATEEDVEDSAILSALLNFEGAGRRFDQLGEFETGNGHAMLVDDYGHHPTEVDVTIK 362

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EK 427
             R      R++++F                  LD  D+ I+ D     E P        
Sbjct: 363 AARAGWEDKRLVMIFQPHRYSRTRDLYDDFANVLDNVDVLIMLDVYSAGEKPIAGADGRA 422

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
           +   I   G    I     I+A+ + +  ++   D+++  G G 
Sbjct: 423 LCRTIRARGKLDPIFVPT-IDALPSVLANIIQNNDLVLTQGAGD 465


>gi|168177452|ref|ZP_02612116.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916]
 gi|182670399|gb|EDT82373.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916]
          Length = 873

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 132/361 (36%), Gaps = 38/361 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     +G T+T   +  +  +          A + L+++ V    +E + 
Sbjct: 494 LIAHILSISGKK---VGMTTTGGIYINNKCINNGDTTGYYSAKTVLTNKEVEVAVLELAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +     K  L  E + K+   +I AD
Sbjct: 551 GGLIKAGLPYDLADVGIITNVTEDHLGLGDINTLEDMAYVKA-LVGEAVKKDGYVVINAD 609

Query: 250 DAYSKEVMKRAHNAGC-----------------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           D  S  ++ R  +                    + L +   G  I+LKK+        V 
Sbjct: 610 DEASINIINRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKINKNEEIINV- 668

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGT 351
                            + V NA+ A    IA+GID   + + LE           F   
Sbjct: 669 -----NKIPITLGGKLIYNVENAMAAIAALIALGIDVNTIRQGLESFSNEEQNPGRFNMY 723

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D
Sbjct: 724 NVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFD 783

Query: 412 IAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              + +D + R     +I   +  GI              +  EA++ AIE  N  D+++
Sbjct: 784 YIYIKEDRDKRGRKDGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVI 843

Query: 464 V 464
           +
Sbjct: 844 M 844


>gi|240014781|ref|ZP_04721694.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI18]
 gi|240017229|ref|ZP_04723769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA6140]
 gi|240081134|ref|ZP_04725677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA19]
 gi|240121304|ref|ZP_04734266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID24-1]
 gi|240124137|ref|ZP_04737093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID332]
 gi|240126247|ref|ZP_04739133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-92-679]
 gi|254494321|ref|ZP_05107492.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268597245|ref|ZP_06131412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268682762|ref|ZP_06149624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268684828|ref|ZP_06151690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
 gi|226513361|gb|EEH62706.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268551033|gb|EEZ46052.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268623046|gb|EEZ55446.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268625112|gb|EEZ57512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
          Length = 445

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 165/424 (38%), Gaps = 54/424 (12%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQSDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T          
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT---------- 147

Query: 163 TTPSPIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                       + L  +G       +E SS  L+    + ++  A +  N+  DH+D +
Sbjct: 148 --------PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVMNISEDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y + K ++F      +   ++ ADD + + + +       +  S+ ++  F   +
Sbjct: 198 DDLLDYAHTKAKIFRG----DGVQVLNADDVFCRAMKRAGRE--VKRFSLEHEADFWLER 251

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +    +  IS +        PL G     N + A  LC A+G+    +LEH++   
Sbjct: 252 GTGCLKQGNEDLISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P
Sbjct: 306 GLPHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTP 360

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +      + ++  D P      +IR ++        +     EA++TA       D
Sbjct: 361 LRDALKDKAKGVFLIGVDAP------QIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGD 414

Query: 461 VLVV 464
           ++++
Sbjct: 415 IVLL 418


>gi|78042912|ref|YP_360890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|122063239|sp|Q3AAE4|MURD_CARHZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77995027|gb|ABB13926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 451

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 139/398 (34%), Gaps = 52/398 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS    L +          I V+                     I+AVTGT+GK++  
Sbjct: 72  LVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--------KAPIIAVTGTNGKTTTT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S++ ++ + +G  +   G                         L     +    VS+E S
Sbjct: 124 SWIGEVLKIAGFKTLIAGNIG--------------------YPLIEAVEEEWDAVSLEVS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   +   K       NL  DH+D H+T + Y  AK R+F     +    ++  DD
Sbjct: 164 SFQLE--TIKSFKPKVAVLLNLTPDHLDRHKTLEGYLEAKARIFINQ-DRTDVTVLNYDD 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
                +         RV     + +      V     K ++ +   G + + +     PL
Sbjct: 221 P---RIRSLGRKTPGRVFYFSQKEELEEGVFV----KKGKIVVRSLGVEEEIIDIENLPL 273

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL     C + G+    +   L     V  R E V   +    +        
Sbjct: 274 PGPHNLENALATVAACWSFGVSGKNIERGLRNFQGVAHRLEKVAEINGVLYVNDSKGTNP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +S    L +       R IV+   G ++      +  +I   +    +V +   R E  E
Sbjct: 334 DSTIKALNSYE-----RPIVLIAGGRNKGNSFGELAREIREKVRFTILVGE--CREELKE 386

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  E++ G   ++   +  +A++ A E+    DV+++
Sbjct: 387 AL--EMV-GYDKYVVAESFEDAVKKAKELARPGDVVLL 421


>gi|313680159|ref|YP_004057898.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Oceanithermus profundus DSM 14977]
 gi|313152874|gb|ADR36725.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oceanithermus profundus DSM 14977]
          Length = 417

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 138/420 (32%), Gaps = 56/420 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            ++  DSR ++ G  FVA+ G +  G  +   A+A+GA  ++   A              
Sbjct: 19  RDLVWDSRAVEPGAAFVALPGTRTHGEAYAEDALARGAALVIGPQARDRG---------- 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L VD+  + L      L    P  +  V+G+ GK+S    + +               
Sbjct: 69  --LQVDDPYRALLRLGRWLRTGFPGVVAGVSGSVGKTSTKEALARALDW----------P 116

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +T  +      LT         A   +   G+          G     L+      G  T
Sbjct: 117 ATEGNLNTPPALTRFFWHLSPDAEGAVVELGID-------RPGEMDELLELTAPDLGVLT 169

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++   + +A    K++L      + +   +            R         + 
Sbjct: 170 AIAPVHLEGLGSLEAVAREKLKLLAASPLRLAHVDL------------RHWGLPEGTRTY 217

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G+        +   +    +      G+       + G      AL A      +G D  
Sbjct: 218 GFDPAANFAGEALELGCA-ETRFRYAGRT--LRLGVLGRGAALAALAALAAAELLGRDVR 274

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  E LE L   PGR E +     GG ++    Y  +  ++E  L+ +     G   VV 
Sbjct: 275 VAAERLEALKPAPGRLEPL---RAGGTLWLNDSYNASPKAVEAALE-VLARCPGPRGVVL 330

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
             G  R+ G  P   +  L+ A+  + T D  R+    +  A +  G PG     +  EA
Sbjct: 331 --GTMRELG--PEAERWHLEAAERVMATAD--RALFVGEFAAAMAAGRPGATAAASVEEA 384


>gi|260899196|ref|ZP_05907591.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AQ4037]
 gi|308107130|gb|EFO44670.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AQ4037]
          Length = 410

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 138/391 (35%), Gaps = 49/391 (12%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVMAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK- 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+    
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSDDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  +G+ + D    +PG     NA  A  +     I+   +L+
Sbjct: 260 DVRIENYHQEGQQGKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +   R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
                           L+  D+ I+ D    
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLIMLDVYAA 410


>gi|256027425|ref|ZP_05441259.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. D11]
          Length = 460

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 143/418 (34%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ ++ S+A    +   +   N  I       K   L A  L     E  +AV GT G
Sbjct: 59  KGSDYVIASTAIKENNPELSYAKNNGI----TLLKRGELLAKLLNR---ETGIAVAGTHG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 112 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNARPGKSEY--------FIAEADESDNSFL 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    + +   +  AI
Sbjct: 164 FMY---------------PKYSVITNIDADHLDVHGNLDNI---KKSFIKFICHTQKEAI 205

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    ++ + +          S+  +   I+ K +  +  K    + +  +   +F 
Sbjct: 206 ICMDCENLRDAVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFELYINKELIGEFS 265

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---------R 354
             +PGE  + N+L    L +  G+    + E L        R++ +  N          +
Sbjct: 266 LNIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFDNDLENGYGNKTK 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I   R++V+F               K A    D  I
Sbjct: 326 RVRIIDDYAHHPTEIKATLKAIKSIDKSRLVVIFQPHRYSRVHFLLDEFKDAFKDVDKVI 385

Query: 415 VTDDNPRSEDPE-KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I +EI+  H     +E  N  + ++  +  + K    +  G G 
Sbjct: 386 LLPIYAAGEKNEFNISSEILKEHINHNNVENMNEWKDVKRYVSRVKKDSTYIFMGAGD 443


>gi|298346709|ref|YP_003719396.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
 gi|298236770|gb|ADI67902.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
          Length = 499

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 86/421 (20%), Positives = 136/421 (32%), Gaps = 52/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AIVV ++   +D     R+    L + +  + L          H   ++AV G  GK+
Sbjct: 82  ANAIVVVTSAIHEDNPEAARAKALGLEIWHRSQAL----DFCTRSH--ELVAVAGAHGKT 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S +S +       G           I     D      +   L    +++     +  S 
Sbjct: 136 STSSMMAHALLDIGADPSFA-----IGGIIADL----GTGARLGSGSAFVIEADESDGSF 186

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S                  TN+  DH+D+  +  A+  A    F   L K    ++ 
Sbjct: 187 LNYS------------PAVEVITNIEPDHLDHWGSSAAFEQA-FVDFTGRLRKGGALVLC 233

Query: 248 ADDAYSKEVMKRAHNAG----CRVLSVGY----QGKFI---HLKKVCAIHNKQQVTISVE 296
           ADDA  K + ++    G     RV+S G+     G  +   H  ++     + QVTI+  
Sbjct: 234 ADDAGVKRLAEQVSERGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDA 293

Query: 297 GKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           G+          + G+  + NA  A G    +G+D    +  L        R + VG   
Sbjct: 294 GQQVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVG-ER 352

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G RIY DY H    +   L+  R +   GR++V F                      D 
Sbjct: 353 DGVRIYDDYGHHPTEIAATLQAARDLAGKGRLLVCFQPHLYSRTYHNVDAFARVFATVDD 412

Query: 413 AIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             V       E P       I   I   +       +   A   A       D L+  G 
Sbjct: 413 LTVCSVYAAREAPIPGVNGNI---ITEHLGKGTYVADMYAAGLHAFRAARPGDFLLFLGA 469

Query: 468 G 468
           G
Sbjct: 470 G 470


>gi|325269661|ref|ZP_08136274.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
 gi|324988029|gb|EGC19999.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
          Length = 498

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 126/362 (34%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 149 EFAGRYTD---SKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN----------- 194

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 195 --------SLALQVAEDPHAYYIIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDFK 244

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y +AKMR+ +     +S      D    KE+ K   +A C   S   +   I   + 
Sbjct: 245 FENYADAKMRIIQNQTKDDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEE 304

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                ++    ++E +D      L G   +YN+L A       GI    + + L     V
Sbjct: 305 GQYKIEKPEPFNMEQED----LSLTGRHNIYNSLAAGIASGISGIRKENIRKSLSDFPGV 360

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V   +    I    A   ++    L+++RT T     ++   G D+     PI 
Sbjct: 361 EHRLEKVCKVAGVQYINDSKATNVDACWYALESMRTPT-----ILILGGKDKGNDYDPIK 415

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A +  +  DN +  D          GIP   +  +  + +     M    D +
Sbjct: 416 ELVREKCAGLVYLGADNKKLHDNFDSL-----GIP-VCDTHSMKDCVAACASMAKPGDTV 469

Query: 463 VV 464
           ++
Sbjct: 470 LL 471


>gi|289765388|ref|ZP_06524766.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D11]
 gi|289716943|gb|EFD80955.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D11]
          Length = 468

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 143/418 (34%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ ++ S+A    +   +   N  I       K   L A  L     E  +AV GT G
Sbjct: 67  KGSDYVIASTAIKENNPELSYAKNNGI----TLLKRGELLAKLLNR---ETGIAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNARPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    + +   +  AI
Sbjct: 172 FMY---------------PKYSVITNIDADHLDVHGNLDNI---KKSFIKFICHTQKEAI 213

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    ++ + +          S+  +   I+ K +  +  K    + +  +   +F 
Sbjct: 214 ICMDCENLRDAVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFELYINKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---------R 354
             +PGE  + N+L    L +  G+    + E L        R++ +  N          +
Sbjct: 274 LNIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFDNDLENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I   R++V+F               K A    D  I
Sbjct: 334 RVRIIDDYAHHPTEIKATLKAIKSIDKSRLVVIFQPHRYSRVHFLLDEFKDAFKDVDKVI 393

Query: 415 VTDDNPRSEDPE-KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I +EI+  H     +E  N  + ++  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEILKEHINHNNVENMNEWKDVKRYVSRVKKDSTYIFMGAGD 451


>gi|148257423|ref|YP_001242008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409596|gb|ABQ38102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 458

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 166/475 (34%), Gaps = 67/475 (14%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-----------KEDGHLFI 60
            E+   L +    + E  I+ V+ DSR ++ G +FVA+ G              DG  F 
Sbjct: 9   AEVARALGL-AGDYPETPIDLVTQDSRAVKPGSLFVALSGTPSGGFVSSFASSRDGWEFA 67

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILA 119
             A   GA A++V               + P LVV +T    L   A     +    ++ 
Sbjct: 68  ANAEQAGAVAMIVPHRIDGI--------SVPQLVVPDTLIDGLWALARAARARFHGPVIG 119

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK+S   F+              G +++ SSF          P+ L  A    S 
Sbjct: 120 LTGSAGKTSTKEFIA----------AYPGASASPSSF----NNFWGVPLTLCNADPSAS- 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  V +  +  G      +  +       N+   H++   + +A    K+ +   L P
Sbjct: 165 --VWVVEMGMNQQGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRKEKVSIARGL-P 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   ++  D          A     RVL  G  G  +H            VT  + G+ 
Sbjct: 222 SDGILVLPVD--------LAAPEWPGRVLRFG-AGADVHAMSQVPAGESWDVTADIAGRH 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F        +++NAL A     A G+D  L+   L ++ ++ GR         G  + 
Sbjct: 273 LAFSLTPGAPHRLHNALAALASVAAAGLDPVLLARELGEVGIMTGRG---VEQRIGEIVL 329

Query: 360 VDY--AHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +D        S+   L +++     GR I V G   +           +   +  I  V 
Sbjct: 330 IDDSFNGNPASMAAALDSLQARPVRGRRIAVIGDMLELGDEAPAYHADMVGHVTGIDGVY 389

Query: 417 DDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              P       +   +   +P     G+ E    ++A + A  +L   DV+V+ G
Sbjct: 390 CVGP-------LMRHLFEKLPPEKRLGWHEDPATLDASQVA-ALLAPDDVVVIKG 436


>gi|149182972|ref|ZP_01861428.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. SG-1]
 gi|148849309|gb|EDL63503.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. SG-1]
          Length = 876

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 135/377 (35%), Gaps = 31/377 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V+ + + SG++   +G T++   +    ++ +        A   L +       +E + 
Sbjct: 498 LVKHLLEGSGMT---VGMTNSDGVYIGAKQVDSGDCSGPISARKVLRNPQTDIAVLETAR 554

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G  TN+  DH  +D  +T +     K RL  E++ ++   I+ AD
Sbjct: 555 GGILREGLAFRYCDVGIVTNVSEDHLGLDGIETYEQLVKLK-RLIPEVVHEKGFCILNAD 613

Query: 250 DAYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTISV--EG 297
           D  +  +                      +V  +G   ++ +   I    + T       
Sbjct: 614 DESTVNMATHTKGTVIYTSLNESNPYIEKAVAERGTAWYVNEDGCIIFHNRGTSHTFLPI 673

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--PGRFEFVGTNSRG 355
           ++         +  V N L A     + GI    + E     +      R  F  T  +G
Sbjct: 674 REVPITINGTAKHNVSNLLQALAAAHSQGISLEELKERALTFNPDAKHSRGRFNRTRVQG 733

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +DYAH    L+ I   +  I   R I V    GDR       M +IA   +D  I+
Sbjct: 734 KEIIIDYAHNQAGLKAIYDAVEHIERNRTITVISAAGDRQDSAIRQMARIASANSDHLII 793

Query: 416 TDD-NPRSEDPEKIRAEIIHGIPGF-------IEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            +D + R     ++   ++     +           +  +A + A +  N+ D+L+    
Sbjct: 794 KEDKDLRGRMTGEVPMLMMEEAETYYRTSDYSTIIIDEEQAYQYAWDHSNEGDLLLFL-- 851

Query: 468 GHETVHIVTNGEKKMSV 484
            +E+  I  N  K++  
Sbjct: 852 -YESFSIAENFIKRIQS 867


>gi|90407785|ref|ZP_01215963.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
 gi|90311145|gb|EAS39252.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
          Length = 487

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 141/419 (33%), Gaps = 50/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VVS+A    +          I VV    + L+      +G      +A++GT GK
Sbjct: 78  GASVVVVSTAIDANNPELLAAEQARIPVVRRA-EMLAELMRYRHG------IAISGTHGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I  ++     ++ PT  I                    ++       + + 
Sbjct: 131 TTTTSLIASIFGQA-----KLDPTFVIGGLLNSAGTNAKLGQSRY-LIAEADESDASFL- 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++ +    TN+  DH+D +Q            F + LP    A++
Sbjct: 184 --------------HLQPMISVVTNIEADHLDTYQGDFEILKDTFVRFIQNLPFYGTAVV 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             DD+  + ++ R        ++ G+ +   I +     + +  +  +    KD      
Sbjct: 230 CLDDSVVESLIPRFARQC---VTYGFHEQADIRISNFSQLRSHCEFDLHRVNKDVLKVQL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD 361
            LPG+    NA  A  + +   ID   ++E L     +  RFE  G   T      +  D
Sbjct: 287 NLPGKHNALNAAAAIAVAMEENIDDEFIIEALHNFEGIGRRFEQYGEFATGRGNVLLVDD 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDN 419
           Y H    ++  +  +R        +V      R    R +  + A  LA  D  ++ D  
Sbjct: 347 YGHHPTEVQATINAVRAGWP-EKRLVMAYQPHRYTRTRDLYEEFAHVLAQVDQLLLLDVY 405

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGH 469
              E P  I       +   I   +  E I             E++   D+++  G G+
Sbjct: 406 SAGEAP--IAGADSRSLCRTIRLQSNKEPIFVPSPEALPAALAEIMEDGDLVLTQGAGN 462


>gi|302871367|ref|YP_003840003.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574226|gb|ADL42017.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 455

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 165/427 (38%), Gaps = 49/427 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS    L      +     + V+          A R      +NI+A+TGT+GK++  
Sbjct: 73  VVVSPGVPLSKRIVVLAHKKGVEVIGEI-----ELAYRFCK--SKNIVAITGTNGKTTTT 125

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V +I ++        G                     L    +  +S   T   +E S
Sbjct: 126 TLVGEILKKQHDDVVVCGNIG------------------LPFIDTVETSSENTIFVLEIS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE  + +    ++  D+
Sbjct: 168 SFQLE--TIKYFKPKVGCILNITPDHLNRHATMENYVKAKMRIFEN-IDEAGYTVLNYDN 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPG 308
             +++++  A     R + V  + K      V    NK   T   + ++        +PG
Sbjct: 225 GITRDLIGLAK----RNVIVFSKNKNHFKNMVFVEENKIYFTFGGKTQEVMKKDEIFIPG 280

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSN 367
           E  + NAL A    +  G+    + + L+    V  R EFV T   G + Y D     ++
Sbjct: 281 EHNLENALAAIACTLPFGVAKDTIKDVLKTFKGVEHRIEFV-TEINGIKFYNDSKGTNTD 339

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           + E  +    +      I++   G D+ +      G IA  +  + ++       +  +K
Sbjct: 340 AAEKAISAFES-----PIILIAGGYDKGESFERFAGLIAKKVKKVFLL------GQTKQK 388

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           I  E+   G   F    +  EA+  + E     DV++++     +  +  N E++  +  
Sbjct: 389 IANELEKIGYQNFELVSSLKEAVEKSFEYAKSGDVVLLS-PACASWDMFENYEQRGKMFK 447

Query: 487 DIIREIL 493
           + + E+L
Sbjct: 448 EYVNELL 454


>gi|294787657|ref|ZP_06752901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
 gi|294483950|gb|EFG31633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
          Length = 443

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 140/358 (39%), Gaps = 41/358 (11%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + L     + I+A+TG++GK++  S V  +C++SGL +   G             +    
Sbjct: 100 ADLLKNQSDKIIAITGSNGKTTTTSLVGYLCEQSGLDTVVAGNIG----------MPVLE 149

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              +    S           +E SS  L+    D +   A +  N+  DH+D +     Y
Sbjct: 150 AWLVRGGKS------ADVWVLELSSFQLE--TTDYLDADAATCLNISEDHLDRYDDLLDY 201

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
              K  +F      ++  ++ ADDA+   + +         LS   Q    +L  V    
Sbjct: 202 ARTKDMIFNG----KAIQVLNADDAFCCAMKRENRPIHYFSLS---QSIDYYLDSVSGSL 254

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             Q   +  +        PL G   V N L A  LC ++G+  A +L+++     +P R 
Sbjct: 255 KHQGADLMPQ-----TDIPLQGSHNVANVLAALALCESVGLARADLLKYIRVFKGLPHRV 309

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E VG   + G I++D +  +N +   +  I  +     ++  G G  +D    P+ G + 
Sbjct: 310 EKVGE--KNGVIFIDDSKGTN-VGATVAAIVGLPEKIWLIAGGMGKGQDFT--PLRGVLR 364

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  + ++  D P      KI  ++ +     I      EA++ A       D++++
Sbjct: 365 GKVGAVFLIGVDAP------KIARDLDNCGVDLIFCDTLPEAVQRAYSQAKSGDIVLL 416


>gi|269958264|ref|YP_003328051.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma centrale str.
           Israel]
 gi|269848093|gb|ACZ48737.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma centrale str.
           Israel]
          Length = 472

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 137/416 (32%), Gaps = 56/416 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+ +V S+A    +      I +  P+L   +   K L               + V G+ 
Sbjct: 70  ADVVVYSNAIKDNNIELQCAIAAGKPVLRRTELLSKALG----------TRRTIVVAGSH 119

Query: 125 GKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S    +  I + +G+  +  IG  +    F+ +N     S               V 
Sbjct: 120 GKTSTTGMIASIMEHAGMDPTVFIGGIA----FSYNNNYKMGSG-----------EWAVV 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                 SS          +       TNL  +H D +   +         F   +     
Sbjct: 165 EADESDSSF-------TALPCEVAVVTNLEWEHPDKYACLET-LKGVFSDFLCNVKAGGA 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-- 301
           A++ +  +         +NA C   + G     + +  +    +     I V+G +    
Sbjct: 217 AVVPSGLSSV-----LGNNAVCGKTTYGLTEGDLLVSNITYASDATVFDI-VDGTEVCHG 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG   V NAL A      +G+D + +   LE    V  RFE V ++ RG     D
Sbjct: 271 VRLPVPGRHNVENALAAVAAVKRLGVDCSCIKSGLENFMGVRRRFE-VISSVRGVTFVDD 329

Query: 362 YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH    ++      +     GR+I +                  A+   D  I+TD  P
Sbjct: 330 YAHHPTEIDATRNTAKLFAAGGRVIGILQPHRFTRVQHFFNDFTAAVSKFDHMILTDVYP 389

Query: 421 RSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
             E+         I   + + G    +   + +  I   I  +    DV+V  G G
Sbjct: 390 AGEEVISGCESLDIVRAVKNLGFDRIVHASD-VHTITDVISAVAGPGDVVVAMGAG 444


>gi|254821976|ref|ZP_05226977.1| hypothetical protein MintA_18732 [Mycobacterium intracellulare ATCC
           13950]
          Length = 419

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 117/377 (31%), Gaps = 45/377 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    V  + +  G      G  +            TP   +L     
Sbjct: 34  RIVGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATPETDFL----- 88

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A   G      +      G   N+G  H+    +++A    K  L  
Sbjct: 89  --------VLEMSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIAQTKSEL-P 139

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQV 291
           + +P+    I+ ADD     +         RV     +     +            +   
Sbjct: 140 QSVPESGVVILNADDPAVAAMAGVTAARVVRVSRAENTSAGPSQLWAGPVSLDEVARPCF 199

Query: 292 TISVEGKDF----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           T+                + G+ QV NAL AA + +  G D   V   L     V     
Sbjct: 200 TLHHRDASGTTQAQVRLGVYGDHQVTNALCAAAVALECGADVDQVAAALAGAGPVSRHRM 259

Query: 348 FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG---------RIIVVFGCGGDRDQG 397
            V T + G  +  D Y    +S+   L+ +  I  G         R   V G   +  + 
Sbjct: 260 HVTTRADGVTVIDDAYNANPDSMRAGLQALAWIAHGGGDRPAEKRRSWAVLGEMAELGED 319

Query: 398 KRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIE 447
                 +I      LD++ + +V     RS         ++ G       G +   +   
Sbjct: 320 AIAEHDRIGRLAVRLDVSRLVVVGSG--RSMSAMH-HGAVMEGSWGSADKGAVNVADGEA 376

Query: 448 AIRTAIEMLNKQDVLVV 464
           A+      L   DV++V
Sbjct: 377 ALALLRAELQPGDVVLV 393


>gi|51246782|ref|YP_066666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase [Desulfotalea psychrophila LSv54]
 gi|50877819|emb|CAG37659.1| probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Desulfotalea psychrophila LSv54]
          Length = 478

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 137/401 (34%), Gaps = 40/401 (9%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++     R   P L       F    A           L +TGT GK++  S +  +   
Sbjct: 90  EEALEVGRRGLPYL------SFPQALAHFFIRSRSS--LVITGTHGKTTTCSLLASVLYH 141

Query: 140 SG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +    +F IG    +  F  + RL             Y  ++G  + +          H 
Sbjct: 142 AKLDPTFMIG--GIVREFNSNFRLGKG---------KYFVAEGDEYDTAFFDKESKFLHY 190

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +      T+L  DH D     +    A  + F +LLP +   I   D+    ++ +
Sbjct: 191 ----RPQIAVITSLEFDHADIFADLEQIKRAFAK-FIQLLPPDGLLIANLDNP---DIAE 242

Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNAL 316
            A  A C V   G    F   L K+ +        +  +G  +D F   LPG+    N+L
Sbjct: 243 LAQAAPCPVEGYGLNSSFPWSLGKISSQSGYTHFEVLKDGTLWDSFTVALPGQHNCLNSL 302

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               +   +G+D+  + + L     V  R E  G  +    +  D+AH   ++   L  +
Sbjct: 303 AVCAIMHHLGLDTKTINQGLVAFGGVKRRQEIRGIENN-ITVIDDFAHHPTAVRETLAAL 361

Query: 377 R-TITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTD-----DNPRSE--DPEK 427
           +      R++ VF        +         + D ++I ++ +     D P  +    ++
Sbjct: 362 KAAYPQNRLVTVFEPRTNSSRRTIFQKQYSESFDSSNIVLLREPVPLVDYPADQLFSSKQ 421

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  ++           N  + +     +L   DV+ +   G
Sbjct: 422 LTCDLKKRGLKAASFANTDQILLHLKSLLQPGDVVAILSNG 462


>gi|325203527|gb|ADY98980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240355]
          Length = 445

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 162/420 (38%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   + L  +G       +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 148 ----PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F      +   ++ ADD +   + +       +  S+ ++  F   ++   
Sbjct: 202 DYAHTKDKIFRG----DGVQVLNADDTFCCAMKRAGRE--VKWFSLEHEADFWLERETGR 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P 
Sbjct: 256 LKQGNEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   
Sbjct: 310 RVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A     + ++  D P      +IR ++        +     EA++ A       D++++
Sbjct: 365 LAGKAKGVFLIGVDAP------QIRHDLDGCGLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|261253806|ref|ZP_05946379.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
 gi|260937197|gb|EEX93186.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
          Length = 486

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 143/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +  +  ++   S       I    P ++   + +        + A  +  +H
Sbjct: 64  ADKGATIYIGHAEENVAKASVVVVSTAINEENPEIIAARSARIPVVRRAEMLAELMRFRH 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 124 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 175 IAEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFETLKQTFID 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ +      +V++ G+     + +        + + T
Sbjct: 220 FLHNLPFYGQAIVCVDDPVVRELIPKISR---QVITYGFSDDADVRIANYRQDGQQGKFT 276

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK D D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 277 VIRQGKADLDITLNIPGRHNALNASAAIAVATEDDIADEAILSAMAGTQGTGRRFDHLGE 336

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ ++  R      R++++F                  L
Sbjct: 337 FDTGNGQAMLVDDYGHHPTEVDVTIQAARNGWEDKRLVMIFQPHRYSRTRDLYDDFANVL 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +++ I              +L  
Sbjct: 397 EQVDVLIMLDVYSAGEKP--IAGADGRALCRTIRSRGKLDPIFVPESKALPAVLANVLQD 454

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 455 GDLVLTQGAGD 465


>gi|195977729|ref|YP_002122973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|226722945|sp|B4U1U3|MURD_STREM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195974434|gb|ACG61960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 452

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 145/417 (34%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----------FAS 107
             QA+  +G   I  S    L D         P +  DN     +L            A 
Sbjct: 48  AAQALLEEGIRVICGSHPLELLDEDFYCMVKNPGIRYDNPMVVCALDKAISILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +      S+   G     +S            
Sbjct: 108 LVSE---APIIGITGSNGKTTTTTMIADVLNAGNQSALLAGNIGFPASEVAQAATAK--- 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                            + +E SS  L     +  +      TNL   H+DYH + + Y 
Sbjct: 162 ---------------DILVMELSSFQLL--GTEQFQPHIAVITNLVPTHLDYHGSFEDYI 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK R+ +  +  +   ++ AD    K + ++   +     S   +    +L        
Sbjct: 205 AAKWRI-QHRMTDKDYLVLNADQELVKSLAQKTKASPV-FFSTKEKVDGAYLADGYLYFK 262

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++QV  + E         LPG   + NAL    +    GI + ++ + L     V  R +
Sbjct: 263 EEQVMSAAE-------LGLPGRHNIENALATIAVAKLRGISNQVISKTLSHFSGVKHRLQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VGT ++    + + + ++N L    K +    + R+I++   G DR      ++  +  
Sbjct: 316 LVGTLNQ--VTFYNDSKSTNIL-ACQKALSGFDNSRVILI-AGGLDRGNEFDELVPDLVG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       E  E+++         +++  +   A + A E     D++++
Sbjct: 372 LK--KMILL-----GESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKPGDIILL 421


>gi|309811809|ref|ZP_07705583.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
 gi|308434230|gb|EFP58088.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
          Length = 944

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 144/394 (36%), Gaps = 50/394 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++ +  +  I +  G     +G TST      +  L T        A  
Sbjct: 501 PIVAVTGTNGKTTTSRMLAHIMKGLGKK---VGMTSTDGIVIDERLLITRDASGPKSAKM 557

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L +  V    +E +  G+ +  L   +      TN+  DH+      + +   N K  +
Sbjct: 558 VLQNPRVDFAVLEVARGGILREGLGYDRNDIAVVTNIQSDHLGMRGINSLEDLANVKQVI 617

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E  +P++  A++ ADD Y + + +                +         +   + V +
Sbjct: 618 VEA-VPRDGFAVLNADDEYVRRMRRVCRGTIVWFSMEAPGSRVRQFIDERCVRGDRAVVL 676

Query: 294 SVEGK-------------DFDFLFPLPGEF------QVYNALVAAGLCIAIGIDSALVLE 334
               K                +   LP  F       V NAL AAG   A G     + +
Sbjct: 677 EPTDKGEMIVLKQGRRSMQLAWTHLLPSTFNGAARMNVANALAAAGAAFAAGAPLHDIRQ 736

Query: 335 HLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-------R 383
            L           GR   +  +     ++VDY H    L+++ + +    +G       +
Sbjct: 737 GLRTFTTSYYLSPGRLNRIEVDH--AEVFVDYCHNPAGLQLLGEFVDRYVAGKNKSTRVQ 794

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            IVV G  GDR       MG++A    D  I+  DDN R   P +  A +  G    I+ 
Sbjct: 795 RIVVVGAAGDRRDQDIREMGELAAKWFDHVIIREDDNLRRRAPGETAALVAEGAQQAIDS 854

Query: 443 G-----------NRIEAIRTAIEMLNKQDVLVVA 465
           G           + +EA + AI+     D++V+ 
Sbjct: 855 GEARAASVETVLDELEATQVAIDSARAGDLVVIC 888


>gi|325838831|ref|ZP_08166678.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490694|gb|EGC93003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 460

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 118/351 (33%), Gaps = 23/351 (6%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AIV               +N  I+ V+  ++    F      +    ++AVTGT GK++ 
Sbjct: 63  AIVTDRPI----GHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIAVTGTCGKTTT 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               + I +             T+ S       T     +L+  +    S          
Sbjct: 119 KDMTRHILKH------FYKTEGTVKS-------TNGESKHLSYLMKLNDSVEAAVYETAV 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           ++ G  +      K   G  TN+G DH+D  +T + Y  AK  + + +  K    I+ AD
Sbjct: 166 AAPGYIKKSSRYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEK-GTLILNAD 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   K++             VG +        +  +       ++V  K +    P  G 
Sbjct: 225 DDNIKKISLEDFKGKIIYYGVG-ENADYQASNIEFVPKGMSYILTVNNKRYKVFIPGYGV 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            QVYN++ A      +GI     ++ L     +   FE +   ++   I   +     SL
Sbjct: 284 HQVYNSMAAIAAAYEVGISYRDSIKLLPSFKHLNSHFEVMKGLNQCQLIVDTWNINPTSL 343

Query: 370 EMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGKIALDLADIAIVT 416
           E  +K +  I   R  +      D      +     +G +        ++T
Sbjct: 344 EASIKTMCEIAKNRKKIALVGSIDALGKNSRQLHQKVGDMICQYDLDVLIT 394


>gi|322385905|ref|ZP_08059547.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
 gi|321270084|gb|EFX53002.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
          Length = 455

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 135/378 (35%), Gaps = 41/378 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++    G +    G    I   A            L   L
Sbjct: 117 APIIGITGSNGKTTTTTMIAEVLTAGGQNGLLSG---NIGFPASQVAQDASETDTLVMEL 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                           TNL   H+DYH + + Y  AK  + 
Sbjct: 174 SSFQLMGIEAF-----------------HPEIAVITNLMPTHLDYHGSFEEYVAAKWNIQ 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + +   +   + +  D  +KE+ K+      +VL    + K        A  +   +T  
Sbjct: 217 KNMTASDYVVLNFNQD-LAKELAKKTA---AKVLPFSTKEKVDG-----AYLDGDVLTFR 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    GID+ ++ E +     V  R ++VG  ++
Sbjct: 268 GEVIMKASELGVPGSHNVENALATIAVAKLRGIDNQVIRETMAHFGGVKHRLQYVGEINQ 327

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + Y D   T+  +    K +        +++   G DR      ++  I   L  + I
Sbjct: 328 -VKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDIKG-LKKMVI 382

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       E   +++         +++  +  +A R A  +    DV++++   + +  +
Sbjct: 383 L------GESAARVKRAADQAEVSYLDASDVRDATRKAFSVAEPGDVVLLS-PANASWDM 435

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E +      + +E+
Sbjct: 436 YKNFEVRGDEFLAVFKEL 453


>gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
 gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
          Length = 815

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 140/384 (36%), Gaps = 28/384 (7%)

Query: 30  INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I  ++ DSR I       F+AI  +K  G  FI  A+ +G + I+    Y          
Sbjct: 24  IKNIAYDSRIIYSIKNTAFIAINTHKNSGEKFIESAMDRGIKVIISEHHYPE-------F 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N   ++V+N+  FL   A   +       + +TG++GK+ +  ++ Q          + 
Sbjct: 77  ENITWIIVENSVAFLQKLAKYHFENSHLQSIGITGSNGKTILKEWLYQCL------WNEF 130

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +  SF                 L    S  +    V  S     +   +      G
Sbjct: 131 PTVKSPKSFNSQIG-------LPLSLLQINDSHQLGIFEVGISKPHEMEKLENIFHPQIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++G  H     +++   + K+RLF+         I   D+    + +K +++   ++
Sbjct: 184 LLTHIGTAHAANFSSEEELIDEKIRLFKN----SEVIIYNGDNDLVDQKIKNSYSDK-KL 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G++ +     K   I   + + +   G++  F      E  + NA+    +   + I
Sbjct: 239 IAYGFKKENQVFIKSN-ISKDENIIVEYFGEEISFPAHQRDEATLTNAMALITVLKELNI 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           ++  ++E +  L  V  R E +  N     I   +    +SL+  L+ +      +  +V
Sbjct: 298 ENKKIVEKINLLKAVEMRLEAIEGNKGNIVINDSFNLDLDSLKTALQFLNEYNKAKKSLV 357

Query: 388 FGCGGDRDQGKRPIMGKIALDLAD 411
                      + +  ++A  + D
Sbjct: 358 LTDIVGVSTNAKELYEEVAELVND 381


>gi|119505603|ref|ZP_01627674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
 gi|119458546|gb|EAW39650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
          Length = 1110

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 153/421 (36%), Gaps = 51/421 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + Q   +G   ++ S   S+ +           L V NT   L   A          ++ 
Sbjct: 371 VAQVFKKGVALVISSEQNSVPEGQ--------YLEVRNTFTALIKLALARRAAFRGRVIG 422

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+ GK++V S V  +    G           I++F     +          A   +  
Sbjct: 423 VTGSVGKTTVCSMVTSLLGVHGEVY------KNIANFNHQPGVPKSIANIPRTARYAVIE 476

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+               +   ++      T++  DH+++H++  +    KM +    + 
Sbjct: 477 MGMGAKRT-------ILPKAVLVRPHTAVVTDIQADHMEFHESVASVITTKMEIIWG-VE 528

Query: 240 KESPAIIYADDAYSKEVMKRA-HNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEG 297
                ++  D AY   +   A   +   +L+ G +    I  +++     +  + + V  
Sbjct: 529 SGGTVVLNRDSAYFATLHGLALQRSDINILTFGQHPQADICAEEIVLEPVQSVIQVRVFQ 588

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGG 356
           + F +   LPG     N+L+A  + ++ G+D A  L   E +     R + +  T++ G 
Sbjct: 589 QTFKYTLSLPGMHMALNSLIAIAVIVSEGVDLATSLPVFENIGAETRRNQKIRVTSASGA 648

Query: 357 RI-YVDY--AHTSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           RI  +D        S+     +L+ +R  + GR I+V    G+           +A D+ 
Sbjct: 649 RIQILDDSFNANPASIRSNLHLLELMRPESEGRRILVLSDMGEMGSEALHYHTALAQDIN 708

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--------EAIRTAI-EMLNKQDV 461
           D  I         D      +  H +   IE  NRI        EA+ T + E++   D+
Sbjct: 709 DSQI---------DIFLSIGDYCHALDQLIE--NRITHKHFNSVEALETFLQEVVRSGDI 757

Query: 462 L 462
           +
Sbjct: 758 V 758


>gi|15615130|ref|NP_243433.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           halodurans C-125]
 gi|30316130|sp|Q9K9S8|MURD_BACHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|10175187|dbj|BAB06286.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus halodurans
           C-125]
          Length = 450

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 120/351 (34%), Gaps = 41/351 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GK++  S V ++ + S       G    ++S                   
Sbjct: 111 AEIVAITGSNGKTTTTSLVVEMLKGSAREPKVAGNIGVVASDVAREATAD---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + +E SS  L        +       N+   H+DYH +++ Y  AK ++ 
Sbjct: 161 --------DVIVMEVSSFQLM--GTSHFRPKVAILLNIFDAHLDYHGSKENYVAAKKKIV 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E  + +E   +  ADD    +V                     ++     +   +++   
Sbjct: 211 EN-MKEEDYFVYNADDPLVSKVAAETKATPIPFSRSTVVKSGAYVDGETYMFRGEKIVEK 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         LPG+  V N L A    + +G     +   L     V  R +FVGT   
Sbjct: 270 GD-------VVLPGDHNVDNVLAAMSAALLMGATKEQIHHVLSTFSGVEHRLQFVGTAFE 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    S    +++         IV+   G DR      ++   AL      +
Sbjct: 323 RKWYNDSKATNILSTTAAIQSFTD-----PIVLLAGGLDRGNSFDDLIP--ALQKVKAVV 375

Query: 415 VTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       E   K+  A +  G+   +E     +A+R A+++    DV+++
Sbjct: 376 L-----FGETKHKLAQAAMEAGVETIVEAERVEDAVRKALDVSANGDVILL 421


>gi|309774771|ref|ZP_07669793.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917456|gb|EFP63174.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 523

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 138/379 (36%), Gaps = 55/379 (14%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFA 157
           A RL  +H + +I+ +TG+ GK+SV + + ++           G  + Q+G T TI +  
Sbjct: 170 AQRLLQEHGDLSIIGITGSYGKTSVKTILNELLSGVYYTLMTPGSYNNQMGITLTIRTKL 229

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           Q                 +L   G  HV      H L Q     +K   G  T++G  H+
Sbjct: 230 QHLHEV------------FLCEMGADHVREI---HDLMQ----FVKPRYGVVTSVGPQHL 270

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKF 276
               +     + KM++ E  LP +    +  D+AY   +        C ++  G ++   
Sbjct: 271 ATFGSMDNILHEKMQMIE-CLPLDGIGFVNRDNAY---IQSYTIKNKCHIVWFGMHESAD 326

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                +         T++ E ++  F   L G+  V N   A  +   +GI   ++   +
Sbjct: 327 YRCSNIRYSEEGTSFTVTAENQEHSFHTRLLGKHNVVNITCAIAVAHTLGISWEIMALAV 386

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGG 392
           EKL  V  R +          +  D Y          L+ I+ +   R I+       G 
Sbjct: 387 EKLPYVEHRLQ---VRKSFCTLLDDAYNSNPEGARCALEVIKQMKHKRFIITPGFLELGE 443

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNR 445
            +++ +  +  +IA  +    +V     +S         I+ G+              + 
Sbjct: 444 KQEEEQYTLGQEIADSVDVALLVGRIQTKS---------IVKGLQARQFPAQNIYICDSF 494

Query: 446 IEAIRTAIEMLNKQDVLVV 464
            EA+    +  + QD +++
Sbjct: 495 QEALSIVQKQADPQDCVLL 513


>gi|256825187|ref|YP_003149147.1| cyanophycin synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688580|gb|ACV06382.1| cyanophycin synthetase [Kytococcus sedentarius DSM 20547]
          Length = 908

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 146/394 (37%), Gaps = 50/394 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++ +  V  I + SG     +G TST      +  +          A +
Sbjct: 486 PIVAVTGTNGKTTTSRMVGHIMRGSGH---HVGMTSTDGVVIDERLVIKRDASGPKSART 542

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L    V    +E +  G+ +  L   +      TN+  DH+      T +     K  +
Sbjct: 543 VLQHPRVDFAVLEVARGGIIREGLGFDRTDVAVVTNVTADHLGLGGVDTVEQLAEIKSVI 602

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               +P+   A++ ADD   +++  R               K  +      +   + V +
Sbjct: 603 VSA-VPRSGYAVLNADDPLVRDMRHRCRGQVVWFSLAEPGSKERNFIDRRLLRGGRAVLL 661

Query: 294 S----------VEGKDFD---FLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLE 334
                       EGK +    +   +P        F V NA+ AAG   + G     +  
Sbjct: 662 EQTERGERIVLAEGKRWMPLTWTHTIPATYGGAARFNVANAMAAAGAAWSAGAPLHDIRA 721

Query: 335 HLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI----RTITSG---- 382
            L          PGR   V  N  G  +YVDYAH    L+ + + +     ++  G    
Sbjct: 722 GLRSFAPDYYLSPGRLNRVEVN--GAEVYVDYAHNPAGLQALSEFVANRAMSLAEGGEEP 779

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIH------- 434
           + IVV G  GDR       +G++A    D  ++ +D N R  +P +    I         
Sbjct: 780 QRIVVLGAAGDRRDSDVRELGEVAAQQFDTVVIREDENLRRREPGEAAGLIREGVDAAVA 839

Query: 435 ---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   IE+ + ++A + A+   N  D++ +A
Sbjct: 840 AGARATTVIEEWDEVQACKVAMSHANPGDIVAMA 873


>gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 144

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSF 145
           K+SV      I  + G + +
Sbjct: 111 KTSVKEMTAAILSQCGNTLY 130


>gi|77919795|ref|YP_357610.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
 gi|109892717|sp|Q3A2G7|MURC_PELCD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77545878|gb|ABA89440.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
          Length = 458

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 134/416 (32%), Gaps = 43/416 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A    +          I V+        L   +         +AV GT GK+
Sbjct: 65  ADVVVTSTAVKSDNPEVIEAHRRLIPVIPRAEMLAELMRMKYG-------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +  +SG     I PT  I                          QG   V+ 
Sbjct: 118 TTTSMVSTVLSKSG-----IDPTVVIGGRLDSIGSNAK------------LGQGKFLVAE 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S G        +  I    TN+  DH+DY+             F   +P    AI+ 
Sbjct: 161 ADESDGSFLK----LSPIIAVVTNVDADHLDYYSDLDEIKRT-FVDFINKIPFYGVAILC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DD   + ++ +      R ++ G       + +++     +   T+  +G+        
Sbjct: 216 LDDPNVQALIPQVGK---RFVTYGMSTQADYNAQEISYQEERTTFTVCWQGERLGQLSIR 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  V NAL A  +   + I    + E       V  RF+      R   +  DY H 
Sbjct: 273 MPGQHNVLNALAAVAVARELEIPFEQIAEAFCDFCGVQRRFQP-KYQGRDIMVVDDYGHH 331

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED- 424
              +++ L    +  + R++ VF                 A   AD  +V D     E  
Sbjct: 332 PAEIKVTLAAACSGWNRRVVAVFQPHRYSRTQALFDEFVTAFYQADHLVVMDIYAAGETP 391

Query: 425 -PEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            P      +  GI G   +      +         E++   D+++  G G+    I
Sbjct: 392 IPGVEARLLAEGIAGHGHRDVHYCPDAEAVAAHLREVVQAGDLVLTLGAGN-VWQI 446


>gi|304392255|ref|ZP_07374197.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
 gi|303296484|gb|EFL90842.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
          Length = 472

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 100/289 (34%), Gaps = 25/289 (8%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D+++T      A  R F E LP     ++  D    + ++ R  
Sbjct: 173 LPATVAVVTNIDPEHLDHYKTFDRAKKA-FRRFIENLPFYGFGVMCIDHPEVQALVARVE 231

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLFPLPGEFQVY 313
           +   R+++ G      +  + V A   K    + ++ +         D   P+PG   V 
Sbjct: 232 DR--RLVTYGNNPQADVRFRNVRAQGAKNIFDVVIQDRRSPDAIELNDLELPMPGIHNVS 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A  +   +G+ +  + + L     V  RF   G+   G  ++ DYAH    +  +L
Sbjct: 290 NATAAIAVAWQLGVGAQEIRDGLAAFKGVRRRFTHTGSW-NGVEVFDDYAHHPVEISAVL 348

Query: 374 KNIRT------ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
           K  R+       T GR+I +                    + AD   V       E P  
Sbjct: 349 KAARSAVRSGDGTGGRVIAIKQPHRYTRLDDLFEEFAACFNDADTVYVAPVYAAGEQPID 408

Query: 426 ----EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
                 +   I       ++     EAI   I       D ++  G G 
Sbjct: 409 NRNAASLAEAIRSSGHRDVQAIEGREAIADLIRAKAKPGDYVLFLGAGD 457


>gi|160891418|ref|ZP_02072421.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|317478449|ref|ZP_07937609.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
 gi|156858825|gb|EDO52256.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|316905338|gb|EFV27132.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
          Length = 443

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 134/362 (37%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+   +G    I +        
Sbjct: 93  EFAGRYTD---AKMVCITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGN-------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                  + AL   + Q   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 139 -------SLALQVATEQH-DYYVIELSSFQLDN--MYNFRANIAVLMNITPDHLDRYDHC 188

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P+++      D    +E+ K    A     +   +   I   + 
Sbjct: 189 MQKYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGLRAHLYPFAAVKEDGAIAYVED 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +   + +  ++E ++      L G   +YN+L A       GI    + + L     V
Sbjct: 249 GEVEINEPIAFNMEQEE----LALHGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGV 304

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V T  RG     D   T+  +      ++++T     V+   G D+      I 
Sbjct: 305 EHRLEKVAT-VRGVSFINDSKATN--VNSCWYALQSMTGKT--VLILGGKDKGNDYTEIE 359

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    + +  +   N   E        +  G+P    +    +A+  A ++  K + +
Sbjct: 360 DLVREKCSALVYLGLHN---EKLHAFFDRL--GLPVADVQTGMQDAVEAAFKLAKKGETV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|114799440|ref|YP_759855.1| putative UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas
           neptunium ATCC 15444]
 gi|114739614|gb|ABI77739.1| putative UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 469

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 74/395 (18%), Positives = 129/395 (32%), Gaps = 51/395 (12%)

Query: 95  VDNTRKFLSLFASRLYGKHP--------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           V +    L + A R+                + V GTSGKS+    +  I   +G S   
Sbjct: 82  VPDIAAALRVGARRMSRAQMLSALFNAAPTAIGVAGTSGKSTTTGMIAWILHHAGKSP-- 139

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                T+ + A      TP  ++   A S + + G+    V+ S        + G     
Sbjct: 140 -----TVMNGAVMKNFQTPDALF---ASSLVGASGIFVSEVDESD-----GSIAGYNPRV 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              +N+  DH    ++          LF     +    ++  D+  +  +      A   
Sbjct: 187 AVVSNISLDH----KSMDELRA----LFGGFAARAETVVLNLDNDETARMAGDFPGA--- 235

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQVYNALVAAGLC 322
            ++   +     L           +T SV     G         PG   V N L A    
Sbjct: 236 -VTYSLENPAARLTAQNIAPAPTHITFSVHDQTSGATAPIRLATPGRHNVSNVLAAIAAT 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G+  A   + L     +  RF+ +GT   G  +  D+ H  + +   L+ +     G
Sbjct: 295 LACGVTLAEAAKALASFAGISRRFDVIGTEG-GVTVIDDFGHNPDKIAATLRTVNQF-PG 352

Query: 383 RIIVVFGCGGDR--DQGKRPIMGKIALDLADIAIVTDDNP--------RSEDPEKIRAEI 432
           R++V+F   G       +R      A +L    I+    P        RS   + + A+I
Sbjct: 353 RVLVMFQPHGFGPLRNMRREFAACFAENLDAEDILLMPEPAYFGGTVDRSVGSQDLAADI 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
                     G+R        E+    D ++V G 
Sbjct: 413 RALGREAHALGDRAACGARLFELAKPGDRILVMGA 447


>gi|149202237|ref|ZP_01879210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
 gi|149144335|gb|EDM32366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
          Length = 469

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 150/441 (34%), Gaps = 51/441 (11%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAV 120
           G  A++VS      Y + +          + V ++   F    A+  +        ++AV
Sbjct: 66  GVAALIVSPGIPHLYPVPNRVIAAAQEAGVPVDNDIGLFFRSLATDDWDGFDVTPKVIAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  +   +G ++   G                         L     +
Sbjct: 126 TGSNGKSTTSALIHHVLTEAGRAAQLAGNIG-------------------RGVLDIDPPE 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 167 DSGVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   +  D+A  + +  +        RV+ +    K                      +
Sbjct: 225 RAVIGV--DEAEGRYLAGQMAEGPNDDRVIRISVDRKLSGFGWSVFARKGFLSEYRHGRQ 282

Query: 299 DFDFLFP----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      LPG     NA  A   C  +G+   ++         +P R + V    +
Sbjct: 283 VGSIDLREVKGLPGSHNHQNACAAYAACRTLGLAPRVIEAGFHSYAGLPHRSQRVAE--K 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G I+V+ +  +N ++  LK +    + R I     G ++D G   +   +A       I
Sbjct: 341 DGVIFVNDSKATN-VDSALKALLAFDNIRWIC---GGLEKDGGLGGLAPGLAHVRRAYVI 396

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                    +  +    I  G           EA+  A+      DV+++A     +   
Sbjct: 397 -------GREAAQFA--IGLGAVDTEVCTTMSEAVARAVRDAEPGDVVLLA-PAAASFDQ 446

Query: 475 VTNGEKKMSVDCDIIREILGL 495
             N EK+       +R +LG+
Sbjct: 447 YDNFEKRGEDFMAQVRALLGV 467


>gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M04-240196]
          Length = 445

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 163/418 (38%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ +DD + + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC AIG+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   + 
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALV 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|197285916|ref|YP_002151788.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227356423|ref|ZP_03840811.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
 gi|229620052|sp|B4F110|MURC_PROMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194683403|emb|CAR44145.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227163533|gb|EEI48454.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
          Length = 487

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 142/422 (33%), Gaps = 53/422 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSTAISADNPEIIAAREARIPVIRRA-EMLAELMRYRHG------VAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I  ++GL    +      S+        +         ++       + +  
Sbjct: 132 TTTAMISNIYAQAGLDPTFVNGGLVKSAGTHARLGCS------RYLIAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +             F   LP    A++ 
Sbjct: 184 -------------HLQPMVAVVTNIEADHMDTYHGNFDNLKETFITFLHNLPFYGRAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
            DD   + ++      G  + + G+ +   + +        +   TIS E   D D +  
Sbjct: 231 IDDDVIRSII---PKVGRYITTYGFSEDADVRITHYEQKGAQGFFTISREDMPDLDVVLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI- 358
            PG     NA  A  +    GI    +L  L        RF+F+G       N + G + 
Sbjct: 288 APGRHNALNATAAVAVATEEGIADEHILAALLNFQGTGRRFDFLGNFSLEHVNGQEGEVM 347

Query: 359 -YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DY H    ++  +K  R      R++++F                  L+  DI ++T
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRLVMLFQPHRYTRTRDLYEDFATVLNQVDILLLT 407

Query: 417 DDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D     E   P      +   I       P ++     I +I   +  L   D+++V G 
Sbjct: 408 DVYAAGEAPIPGADSRSLCRTIRQRGKLDPIWVSDVENISSILAGV--LTDNDLVLVQGA 465

Query: 468 GH 469
           G+
Sbjct: 466 GN 467


>gi|188995058|ref|YP_001929310.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277]
          Length = 823

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 151/420 (35%), Gaps = 41/420 (9%)

Query: 11  FPELINQLSIFPMQ-WRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQG 67
           F EL  +LS   ++   + +I  + +DSR +      +F A+     DGHL+I     +G
Sbjct: 4   FSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLYDKG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPIL---VVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             + V+S      D S  +    P      V +    L   A+         ++ +TG++
Sbjct: 64  VRSFVIS------DPSKDLMEKMPQANWMRVAHPLDALQRIAALRRSMFDIPVIGITGSN 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+ V  F+ Q+ ++                    +  +  S I +  ++  ++ +    
Sbjct: 118 GKTIVKEFLYQLLRK--------------DYRIVRSPRSYNSQIGVPLSVWQMAEEHTLG 163

Query: 185 VSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +     S   +  RL+  I    G  TN+G  H +     +     K+RLF    P    
Sbjct: 164 IFEAGISQMGEMERLESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLF----PHCHT 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            +   D       +     A   V  S       +++ ++ +  N+ ++     GKD+  
Sbjct: 220 IVYNGDCEEIAAAISFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSL 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
           + P      + + +    L   +  +     +    L  V  R E V     G  I  D 
Sbjct: 280 VLPFTDAASIEDIIHCITLISVLCPEVLSARKRFASLEPVEMRME-VKAGDHGNTIINDV 338

Query: 362 YAHTSNSLEMILKNIRTIT-----SGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           Y++   SL + L   R  T        +I+  +   G   ++  R + G++ +   D  +
Sbjct: 339 YSNDVYSLTLALDFQRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFV 398


>gi|163753860|ref|ZP_02160983.1| cyanophycin synthetase [Kordia algicida OT-1]
 gi|161326074|gb|EDP97400.1| cyanophycin synthetase [Kordia algicida OT-1]
          Length = 884

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 129/357 (36%), Gaps = 29/357 (8%)

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + I   + +  +++G T++   + Q+  L T      A A   L    V +  +E +  G
Sbjct: 498 RLIAHMAKMKGYRVGYTTSDGVYIQNRLLMTGDCTGPASAEFVLRDPTVNYAVLECARGG 557

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           L +  L       G  TN+  DH+      T +     K  + E +LP +  AI+ ADD 
Sbjct: 558 LLRAGLGFKNCDIGIVTNVAADHLGLKGIHTIEQLAKVKGVIPETVLP-DGTAILNADDE 616

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTIS--------VEG 297
               + K   N  C V          H+K       +CAI+    +T+         ++ 
Sbjct: 617 LVYAMRK---NVECNVALFSLDENNPHIKAMQKRGGICAIYENGYITLCRGEWKMRVIKA 673

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRG 355
            +    F     F + N L A       G     +   LE       +          + 
Sbjct: 674 VNVPLTFGGKATFMIQNVLPAVITAYLKGFTLEDMRAALETFIPSASQTPGRLNLFKFKN 733

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I VDYAH    +  + + +  + +   I +    GDR       MG +A ++ D  I+
Sbjct: 734 FQILVDYAHNPAGMRALKQFVDNLNATEKIGIIAGIGDRRVEDNNEMGALAAEMFDEVII 793

Query: 416 TDDN-PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             D   R +  E++   +  GI             +  +AI  A++   K  ++V+ 
Sbjct: 794 RQDKRLRGKTEEELIKMLDDGIKMHDPNKKTTIIPSEKKAILHAVKNAKKGTLIVLC 850


>gi|116627601|ref|YP_820220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMD-9]
 gi|122267801|sp|Q03L98|MURD_STRTD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116100878|gb|ABJ66024.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus LMD-9]
          Length = 450

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 150/428 (35%), Gaps = 63/428 (14%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           DG  F         + +G + +       L D +  +    P +  DN      + A  L
Sbjct: 39  DGKAFEENPSAQSLLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNP-----MVARAL 93

Query: 110 YGKHP-------------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
             + P               I+ +TG++GK++  + +  +    G S    G    I   
Sbjct: 94  EKEIPVWTEVELAYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSG---NIGFP 150

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
           A +   +  +   L   LS     G                 ++         TNL   H
Sbjct: 151 ASEVAQSVTNQDTLVMELSSFQLMG-----------------IESFHPHIAVITNLMPTH 193

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           IDYH + + Y  AK  + +  +  +   I+  +   +KE+  + +       +V  +   
Sbjct: 194 IDYHGSFEEYVAAKWNI-QNEMTSDDFIILNFNQDLAKELATQTNAQVVPFSTV--EKVD 250

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               +   ++ K ++ +  +         +PG   V NAL    +    G+ +  + E L
Sbjct: 251 GAYLENGGLYFKGELLMHAD------ELGVPGSHNVENALATIAVAKLSGVSNQAIKETL 304

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                V  R +FV T     + Y D   T+  +    K +        +++   G DR  
Sbjct: 305 SSFGGVKHRLQFVDT-IDDVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGN 360

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++  I   L  + I+ +  PR +     RA    G+  +++  +  +A R A E  
Sbjct: 361 EFDELIPDI-TGLKKMVILGESAPRVK-----RAADKTGVT-YLDAKDVADATRIAFEQA 413

Query: 457 NKQDVLVV 464
           +  DV+++
Sbjct: 414 SAGDVVLL 421


>gi|332288551|ref|YP_004419403.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
 gi|330431447|gb|AEC16506.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
          Length = 480

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 141/418 (33%), Gaps = 48/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  +VVSSA    +          I V+    +   + A  +  +H    +AV GT G
Sbjct: 81  AGASVVVVSSAIKPDNPEVIAAREARIPVI----QRAQMLAEIMRFRHG---IAVAGTHG 133

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL-SYLSSQGVTH 184
           K++  + +  I  ++ L         T  +        T + + L++ L +       + 
Sbjct: 134 KTTTTAMIAMIYAQAKLDP-------TFVNGGLVKSAGTNAHLGLSRYLIAEADESDASF 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESP 243
           +                ++ +    TN+  DH+D YH   +      +  F   LP    
Sbjct: 187 L---------------HLQPMVAVVTNIEPDHMDTYHGNFEEMKQTYIN-FLHNLPFYGL 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD   + ++ +             +  +                I  +G+  + L
Sbjct: 231 AVLCADDPVLQTLLPKV-GRQVITYGFSDKADYRIEDYSQTGFQGHYTVICPDGQRMEIL 289

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYV 360
             +PG+    NA  A  +    GID   +L  L        RF+ +G+    +    +  
Sbjct: 290 LNVPGKHNALNATAALAVAKEEGIDDESILAALADFQGAGRRFDQLGSFIRPNGKVMLID 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    + + ++  R     + IV +F                  L   D+ I+ D  
Sbjct: 350 DYGHHPTEVNVTIQAARHGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDVLIMLDVY 409

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--------IEM-LNKQDVLVVAGKG 468
           P  E P  I       +   I    +I+ I  A        ++  L   D+++  G G
Sbjct: 410 PAGEAP--IAGADSRSLCRSIRNLGKIDPIFLADPEQLPEIMDQVLQDGDLILAQGAG 465


>gi|309798668|ref|ZP_07692935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
 gi|308117714|gb|EFO55123.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
          Length = 391

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 133/398 (33%), Gaps = 38/398 (9%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            S       P ++V++        A+    K   ++ AVTG++GK++    +  +   + 
Sbjct: 1   MSEKEVEGQPYILVEDVLTAFQDLAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLATTF 60

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +    G  +                  L              V      H  D H L  
Sbjct: 61  KTYKTQGNYNNEIGLPYTVLHMPDDTEKL--------------VLEMGQDHLGDIHLLSE 106

Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           +        T +G  H+ + + +      K+++ +  + K    +   D      +++  
Sbjct: 107 LAHPKTAIVTLVGEAHLAFFKDRSEIAKGKLQIADG-MEKGGVLLAPVDP-----IVEDY 160

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                +V+  G   +   L+       K  +T  V   +     P+ G++   NA++A+ 
Sbjct: 161 LPTDKKVVRFGPGAE---LEITELTERKDSLTFKVNFLEQALDLPVTGKYNATNAMIASY 217

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
           + +  G+    + +  + L +   R E+    + G  I  D Y     ++++IL+    I
Sbjct: 218 VALQEGVTEEQIRQAFQNLELTRNRTEW-KKAANGADILSDVYNANPTAMKLILETFSAI 276

Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                G+ I V     +       +  ++ L +    + T      ED   +        
Sbjct: 277 PANEGGKKIAVLADMKELGDQSVQLHNQMILSITPDVLDTVIF-YGEDIADLAQLASQMF 335

Query: 437 P-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVAG 466
           P           + ++ EA ++   E L   D +++ G
Sbjct: 336 PIGHVYYFKKTAEEDQFEAMVKQVKESLGAHDQILLKG 373


>gi|317504115|ref|ZP_07962117.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
 gi|315664787|gb|EFV04452.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
          Length = 443

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 140/394 (35%), Gaps = 49/394 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G   + +G    I          
Sbjct: 94  EFAGRYTQ---SKMVCITGSNGKTTTTSLIYHIFKTAG---YDVGLAGNIG--------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 139 -------KSLALQVAEDPHEYYVIELSSFQLDN--MYDFRANIAVLLNITPDHLDRYDFK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y +AKMR+ +    ++S      D    KE+ K    A     S   +       + 
Sbjct: 190 FENYADAKMRILQNQTQEDSFIYWNDDPVIQKELEKFETKAFVCPFSEHKEQGAFGYIED 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                      +++ ++      L G+  ++N+L A       GI S  + + L     V
Sbjct: 250 GNYKLDYPTPFNMKQEE----LSLTGKHNLHNSLAAGLAANIAGIKSEAIRKGLGDFPGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V     G +   D   T+  ++     + ++T+  I+++   G D+     PI 
Sbjct: 306 EHRLEKV-CKVNGVQYINDSKATN--VDACWYALDSMTTPTILIL--GGKDKGNDYTPIK 360

Query: 403 GKIALDLADIAIVTDDN----PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             +      I  +  DN       +D   I  +            +  + +     +   
Sbjct: 361 ELVKKKCRAIVYLGADNKKLHDNFDDLGVIIKD----------THSMKDCVEACHTLAQP 410

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            D ++++     +  +  N E++ ++  D++R++
Sbjct: 411 GDTVLLS-PCCASFDLFHNMEERGNMFKDMVRKL 443


>gi|312867256|ref|ZP_07727466.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
 gi|311097385|gb|EFQ55619.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
          Length = 449

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 146/416 (35%), Gaps = 54/416 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + +       L D    +    P +   N    K L            A  
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEDFAVMVKNPGIPYSNPMVEKALEKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G     +S             
Sbjct: 109 ISD---APIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFPASQVAQTATEK---- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                           + +E SS  L    ++         TNL   HIDYH + + Y  
Sbjct: 162 --------------DVLVMELSSFQLM--GIEAFHPEIAVITNLMPTHIDYHGSFENYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  L + +  K+   ++  +   +KE+  +         +V  +       +   +  K
Sbjct: 206 AKWNLQKNMTEKD-VIVLNFNQDLAKELATKTKARVLPFSTV--EKVDGAYLEDGLLKFK 262

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +V +  +         +PG   V NAL    +    G+++ ++ E L     V  R ++
Sbjct: 263 GEVVMRAD------ELGVPGSHNVENALATIAVAKVRGVENEVIKETLSAFGGVKHRLQY 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VD-EIQGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPHI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L ++ I+ +  PR +           G+P +++  +  +A + A  + +  DV+++
Sbjct: 372 LKEMVILGESAPRVKRVAD-----KAGVP-YVDAADVADATKKAFYLASPGDVVLL 421


>gi|114773353|ref|ZP_01450557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
 gi|114546287|gb|EAU49198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
          Length = 468

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 148/408 (36%), Gaps = 47/408 (11%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
             ++VS      Y              ++V ++   F   FA++ +        ++ VTG
Sbjct: 68  VCLIVSPGIPHLYPAPHPIVLKAWQNGVVVDNDVGLFFRSFATQEWDNFDVMPKVICVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+  + +  + + S       G                         L    +Q  
Sbjct: 128 SNGKSTTTALIAHLLEGSNRKVVVAGNIG-------------------RGVLDIPPAQDG 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T V +E SS+ +D  R   +      F NL  DH+D H     YF AK RLF +  P  +
Sbjct: 169 TIVVLELSSYQIDLAR--ALAPDIAVFINLSPDHLDRHNGMGGYFYAKRRLFIDGNPDRA 226

Query: 243 PAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VEG 297
              +   +  + +  +++   +G  V+SV    K  +                    V  
Sbjct: 227 IIGVDEIEGQFLENQLRQDAKSGEPVISVSVNSKLQNNGWSVFSRKGFLAEWRKGRQVAS 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D   +  LPGE    NA  A  +C +IG+   L+ E L     +  R + VGT +    
Sbjct: 287 IDLRSMSGLPGEHNHQNACCAYAVCRSIGLAPKLIEEKLNSYVGLTHRCQTVGTFNGVMY 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +    A   ++ +  L   ++I    + +V   G  ++ G  P+            I TD
Sbjct: 347 VNDSKATNVDAAKKALLAFKSI----LWIV--GGESKEAGVLPLKPYFNRIKKAYLIGTD 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +   +D   I          F+  G+  EA+R A     K DV+++A
Sbjct: 401 VSDLIKDLSSI---------DFVIAGSISEAVRLASLDAEKNDVVLLA 439


>gi|89099774|ref|ZP_01172647.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
 gi|89085521|gb|EAR64649.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
          Length = 695

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 137/372 (36%), Gaps = 25/372 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTGT+GK++ +  V+   ++ G +   +G TS+   +  +  + T        A  
Sbjct: 303 PVIAVTGTNGKTTTSRLVKHFIEKEGTT---VGLTSSDGVYVGEQCIDTGDCSGPISARK 359

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM-RLF 234
            LS   V    +E++  G+ +  L       G  TN+  DH+     +      K+ RL 
Sbjct: 360 ILSHPKVDIAVLESARGGILREGLAFRHCDIGIVTNVSEDHLGLDGIEDFAQLVKLKRLI 419

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQ 290
            E++ +    I+ ADD  + ++                S G Q      + +  + +  Q
Sbjct: 420 PEVVIEGGYCILNADDPETLKMASYTKGKVIYTSLNEESEGSQRALEKGEPLWYLDSMGQ 479

Query: 291 VTISVEG--------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341
           +  +  G         D         +  + N L A     A G+    + E        
Sbjct: 480 IVYAEAGIKAEFLPAADVPVTINGRAKHNIANLLQALAAAAAQGVSLETLKEKALSFTPD 539

Query: 342 -VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
               R  F     +G  I +DYAH +  L  +        + R+I +    GDR      
Sbjct: 540 SRNSRGRFNAFLVQGREIIIDYAHNAAGLSAVFGTAADTKNKRLITILSAPGDRSDSDIA 599

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAI 453
            M +I+   +D+ I+ +D + R   P +  + +       I+        + +EA + A 
Sbjct: 600 RMAEISAGYSDLIIIKEDKDLRGRLPLETASLLKAAASTVIDSQSVFVHPDELEAYQKAW 659

Query: 454 EMLNKQDVLVVA 465
            +  + D L+  
Sbjct: 660 SLSQEGDTLLFL 671


>gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M13399]
 gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240013]
          Length = 445

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 163/418 (38%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ +DD + + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC AIG+    +LEH++    +P R 
Sbjct: 258 QGNEDLIATQD------IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   + 
Sbjct: 312 EKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALV 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 GKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|237743962|ref|ZP_04574443.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 7_1]
 gi|229432993|gb|EEO43205.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 7_1]
          Length = 468

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 144/418 (34%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ ++ S+A    +   +   N  I       K   L A  L     E  +AV GT G
Sbjct: 67  KGSDYVIASTAIKENNPELSYAKNNGI----TLLKRGELLAKLLNR---ETGIAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNARPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    + +   +  AI
Sbjct: 172 FMY---------------PKYSVITNIDADHLDVHGNLDNI---KKSFIKFICHTQKEAI 213

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    ++ + +          S+  +   I+ K +  +  K    + +  +   +F 
Sbjct: 214 ICMDCENLRDAVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFELYINKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L +  G+    + E L        R++ +         G  ++
Sbjct: 274 LNIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFDKDLENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I   R++V+F               K A    D  I
Sbjct: 334 RVRIIDDYAHHPTEIKATLKAIKSIDKSRLVVIFQPHRYSRVHFLLDEFKDAFKDVDKVI 393

Query: 415 VTDDNPRSEDPE-KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I +EI+  H     +E  N  + ++  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEILKEHINHNNVENMNEWKDVKRYVSRVKKDSTYIFMGAGD 451


>gi|226947343|ref|YP_002802434.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2
           str. Kyoto]
 gi|226840998|gb|ACO83664.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2
           str. Kyoto]
          Length = 873

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 133/361 (36%), Gaps = 38/361 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     +G T+T   +  +  +          A + L+++ V    +E + 
Sbjct: 494 LIAHILSISGKK---VGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +     K  L  E + K+   +I AD
Sbjct: 551 GGLIKAGLPYDLADVGIITNVTEDHLGLGDINTLEDMAYVKA-LVGEAVKKDGYVVINAD 609

Query: 250 DAYSKEVMKRAHNAGC-----------------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           D  S  ++ R  +                    + L +   G  I+LKK+        V 
Sbjct: 610 DEASINIINRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKINKNEEIINV- 668

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGT 351
                            + V NA+ A    IA+G+D   + + LE  +        F   
Sbjct: 669 -----NKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFNNEEQNPGRFNMY 723

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D
Sbjct: 724 NVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFD 783

Query: 412 IAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              + +D + R     +I   +  GI              +  EA++ AIE  N  D+++
Sbjct: 784 YIYIKEDRDKRGRKDGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVI 843

Query: 464 V 464
           +
Sbjct: 844 M 844


>gi|212696146|ref|ZP_03304274.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676775|gb|EEB36382.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 463

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 141/412 (34%), Gaps = 42/412 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGKSSV 129
           ++ + A S  +       +  + VV  TR  FL            +N +AV+G+ GKS+ 
Sbjct: 74  VIYTDAISDNNEELIAARSLGVPVV--TRGVFLGGLMKNY-----KNSIAVSGSHGKSTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I   S  +     PT  +     +                 L ++   +     
Sbjct: 127 TSMISKILMNSTKN-----PTILLGGDLDEIEGNVHVGDE-----EILVTEACEYKGNIR 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +              G   N+  DH+DY++          + + +   + S  I+  +
Sbjct: 177 YYY-----------PSIGIILNIDEDHLDYYKDLNDIIET-FKSYLKNQDENSKTILNLN 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPG 308
           +  +K V+                  +           K +  + + +G    F   + G
Sbjct: 225 EENNKLVIDSVQGELITYGQENPDADYNATNITFDEDGKPRFDLIMKDGSTEHFELSILG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA  A    +  G+D   +   ++    +  R + +G N  G +I +DY H  + 
Sbjct: 285 RHNINNACAAIISTLESGVDIETIKNSIQSYKGLERRMQLLG-NIDGCKIILDYGHHPSE 343

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPE 426
           +++ L  +   T GR+I V+         +         D AD  I+TD     E  DP 
Sbjct: 344 IQVNLSALAEHTKGRLICVWQPHTYTRTKRLFNEFVNCFDDADEVIITDIFAAREPFDPS 403

Query: 427 KIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
               +I+  +        ++   ++++     +  + + D ++V G G    
Sbjct: 404 ISSKDIVDALVEKGKSAKYLPTFDQVK--EYVLSDIKENDQVIVTGSGDSDY 453


>gi|257438505|ref|ZP_05614260.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium prausnitzii
           A2-165]
 gi|257199084|gb|EEU97368.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium prausnitzii
           A2-165]
          Length = 476

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 131/422 (31%), Gaps = 47/422 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  G++ +V S+A +  +      ++  I  V+ +             +  +
Sbjct: 82  GHA-ADNVI--GSDLVVYSAAIAKDNVELNAAASYGIPTVERSVLL------GYVSRLYK 132

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKA 173
           + + V+GT GK++  S +    + +G     +  G    I  + +  +            
Sbjct: 133 DSICVSGTHGKTTTTSMITTALELAGRDPSAVIGGKLPLIGGYGKAGKG----------- 181

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + +EA            +        N+  DH+DY+ +       K   
Sbjct: 182 ---------DDIVIEACEFSE---TFLKLTPYMSVVLNIDNDHLDYYGSM---GELKFAF 226

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L         ADD  + +VM   +    RV +        +       +       
Sbjct: 227 KRFALMTHFMIFANADDKNTMDVM---YTLDRRVRTFAIDNAADYRAVNVQEYKPGFFEF 283

Query: 294 SVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++  D          +PG   +YNAL    +C ++G+                 RFE  
Sbjct: 284 DLKEWDTNELGHIRLAVPGRHNIYNALAMCAVCRSVGLTVEECANAALNFKGAGRRFEVY 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G    G  +  DYAH    +   L   + +   R+I V                     +
Sbjct: 344 G-ECNGAVVVDDYAHHPTEIRATLNTAKELGYNRVIAVHQPFTYSRTKMLFNDFVDVFKI 402

Query: 410 ADIAIVTDDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            DI ++T      E  DP    A++   IP  +   +   A     +   + D+++  G 
Sbjct: 403 PDITVITPIMGSREPNDPTITSAKLAAQIPNSVLVDSLEAAADWVKQNAREGDLVITLGC 462

Query: 468 GH 469
           G 
Sbjct: 463 GD 464


>gi|197124214|ref|YP_002136165.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
 gi|196174063|gb|ACG75036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
          Length = 462

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 70/409 (17%), Positives = 127/409 (31%), Gaps = 56/409 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTG 122
           GA+ +V S    L +         P +     R          A+R     P  I+ +TG
Sbjct: 70  GADLVVASPGVPLAN---------PEIQAARRRGVAVWGEVELAARFLDGLP--IVGITG 118

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  +    +  R    +F  G   T                     LS L   G 
Sbjct: 119 TNGKSTTTALTGALLAR-DRRTFVGGNLGT--------------------PLSELVLSGE 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              +            ++  +    +  N+  DH+D +    AY  AK RLF    P + 
Sbjct: 158 PADAAVVELSSFQLEGIERFRARVAAVLNVTPDHLDRYPDVDAYAAAKARLFATQQPDD- 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKD 299
            A+  A D      +  A  +   + + G+        +            +  +  G+ 
Sbjct: 217 VAVANARDP---RALAMAGASRADLHTFGFGAPAPASARDEGGEPGPEGTAIWFTPRGRA 273

Query: 300 FD----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +        L G     NA+ A      +G+    V   L+    +  R E V      
Sbjct: 274 PERYQLRNRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAFPGLHHRLELVAEGRGV 333

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +    A   +S  + L    +      +V+   G  +     P+       +  +  +
Sbjct: 334 EWVNDSKATNVDSTFVGLAAFPSGAP--RVVLIMGGRGKKAPYAPLRPLFGGRVKALLTI 391

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +D P  E       ++    P     G+   A+R A  +    DV+++
Sbjct: 392 GEDAPAIERE---LGDLAPTEP----CGDLAGAVRRAAVLSGPGDVVLL 433


>gi|262282744|ref|ZP_06060512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
 gi|262262035|gb|EEY80733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
          Length = 450

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 125/350 (35%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + Q+    G +    G     +S    +              
Sbjct: 112 APIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQSAS------------ 159

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G   + +E SS  L    ++         TNL   H+DYH + + Y  AK  + 
Sbjct: 160 ------GKDTLVMELSSFQLM--GIEAFHPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQ 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + +   +   + +  D ++K +  +         +   +        V        +T  
Sbjct: 212 KNMTADDYLVLNFNQD-WAKGMASQTQATVVPFSTTEKEDGAYLDGDV--------LTFR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    GID+  + E L     V  R ++VG  + 
Sbjct: 263 GEAIIKVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNE 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               + + + ++N L    K +        +++   G DR      ++  +   L  + I
Sbjct: 323 --VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLKG-LKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    PR +     +AE+      +++  +  +A   A  +    D++++
Sbjct: 378 LGQSAPRVKRAAD-QAEV-----SYLDATDVRDAAHKAFALAEPGDIVLL 421


>gi|296876961|ref|ZP_06901005.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431996|gb|EFH17799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 449

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 136/350 (38%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G      G     +S                   
Sbjct: 112 APIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFPASQVAQTATEK---------- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + +E SS  L    ++         TNL   HIDYH + + Y  AK  L 
Sbjct: 162 --------EVLVMELSSFQLM--GIEAFHPEIAVITNLMPTHIDYHGSFENYVAAKWNLQ 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + +  K+   ++  +   +KE+  +         ++  +       +   +  K +V + 
Sbjct: 212 KNMTEKD-VIVLNFNQDLAKELATKTKARVLPFSTI--EKVDGAYLEDGLLKFKGEVVMR 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         +PG   V NAL    +     +++ ++ E L     V  R ++V    +
Sbjct: 269 AD------ELGVPGSHNVENALATIAVAKVRSVENEVIKETLSAFGGVKHRLQYVD-EIQ 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +    + ++I++   G DR      ++  I   L ++ I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGFDNNKVILI-AGGLDRGNEFDELVPHI-TGLKEMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +  PR +     RA    G+P +++  +  +A + A ++ +  DV+++
Sbjct: 378 LGESAPRVK-----RAADKAGVP-YVDAADVADATKKAFDLASPGDVVLL 421


>gi|329895277|ref|ZP_08270919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
 gi|328922399|gb|EGG29742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
          Length = 452

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 136/350 (38%), Gaps = 45/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GKS+V + V ++  ++GL +   G  S                     AL
Sbjct: 115 APVIGITGSNGKSTVTTLVGEMLAKAGLRAAVGGNLS-------------------PAAL 155

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L    +    +E SS  L+  R + + L      N+  DHID+H +  AY  AK R+F
Sbjct: 156 AIL-DDDIEVYVLEMSSFQLE--RSNALGLDVAVVLNVTADHIDHHGSMAAYHAAKHRIF 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                K    ++  DD  ++ ++    ++  +V   G +       K+        V+  
Sbjct: 213 R----KAKAVVVNDDDVLTQPLV----DSTVQVTRYGAKAHRDAEFKLLNDALWMGVSKI 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  +        G     NALVA  +     + +  +   L     +P R   V T + 
Sbjct: 265 IDVSEMALR----GRHNHLNALVACAIAACFDVAAEAMAATLRTFSGLPHRCRVVQTIA- 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G  Y++ +  +N +   L  I  I     +V+   G  + Q    ++  I   + ++ +
Sbjct: 320 -GVTYINDSKATN-VGAALAAIEGIGPNSDLVLLAGGLGKGQDFSALVPAINRYVREVIV 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E   ++ A  +  +   I+  N  +A+  A E+    D +++
Sbjct: 378 F------GEAAGELAA--LPLLRPAIQVENLQQAVSRAAEIAQPGDTVLL 419


>gi|237793438|ref|YP_002860990.1| cyanophycin synthetase [Clostridium botulinum Ba4 str. 657]
 gi|229264115|gb|ACQ55148.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Ba4 str. 657]
          Length = 873

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 133/361 (36%), Gaps = 38/361 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     +G T+T   +  +  +          A + L+++ V    +E + 
Sbjct: 494 LIAHILSISGKK---VGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +     K  L  E + K+   +I AD
Sbjct: 551 GGLIKAGLPYDLADVGIITNVTEDHLGLGDINTLEDMAYVKA-LVGEAVKKDGYVVINAD 609

Query: 250 DAYSKEVMKRAHNAGC-----------------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           D  S  ++ R  +                    + L +   G  I+LKK+        V 
Sbjct: 610 DEASINIINRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKINKNEEIINV- 668

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGT 351
                            + V NA+ A    IA+G+D   + + LE  +        F   
Sbjct: 669 -----NKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFNNEEQNPGRFNMY 723

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D
Sbjct: 724 NVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFD 783

Query: 412 IAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              + +D + R     +I   +  GI              +  EA++ AIE  N  D+++
Sbjct: 784 YIYIKEDRDKRGRKDGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVI 843

Query: 464 V 464
           +
Sbjct: 844 M 844


>gi|332361772|gb|EGJ39576.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1056]
          Length = 459

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + Q+    G +    G    I   A     T  S   L   L
Sbjct: 121 APIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASSKDTLVMEL 177

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                           TNL   H+DYH + + Y  AK  + 
Sbjct: 178 SSFQLMGIEAF-----------------HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQ 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + +   +   + +  D ++KE+  +   A     +          K   A      +T  
Sbjct: 221 KNMTADDYLVLNFNQD-WAKEMASQTQAAVVPFSTTE--------KVDGAYLEGDVLTFR 271

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    GID+  + E L     V  R ++VG  + 
Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGRVNE 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               + + + ++N L    K +        +++   G DR      ++  +   L  + I
Sbjct: 332 --VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLKG-LKKMVI 386

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    PR +     RA    G+  +++  +  +A   A       D++++
Sbjct: 387 LGQSAPRVK-----RAADQAGV-SYLDATDVWDAAHKAFAQAEPGDIVLL 430


>gi|293392858|ref|ZP_06637176.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
 gi|291424717|gb|EFE97928.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
          Length = 491

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 140/424 (33%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A    +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAIPSDNPEIVAAREARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
                         ++ +    TN+  DH+D YH   +         F   LP    A++
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVM 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLF 304
             DD   +E++ R       V + G+     + ++       +   T+S + K       
Sbjct: 230 CIDDPVVRELLPRVGR---HVTTYGFSDDADVRIESYSQRGPQGHFTLSRQDKPLMTVTL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGG 356
             PG     NA  A  +    GID   +L  L        RF+F+G          +   
Sbjct: 287 NAPGRHNALNAAAAVAVATEEGIDDDDILRALAGFQGTGRRFDFLGEYPLTPVNGKAGSA 346

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DY H    ++  +K  R      R++++F                  L   D+ ++
Sbjct: 347 MLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFANVLSQVDVLLM 406

Query: 416 TDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D  P  E P            IR     G    I   +      T  ++L   D+++V 
Sbjct: 407 LDVYPAGEAPIPGADSRSLCRTIRN---RGKLDPILVSDADTVPETLAQLLQNDDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|83764807|dbj|BAE54951.1| unnamed protein product [Aspergillus oryzae]
          Length = 497

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 139/418 (33%), Gaps = 51/418 (12%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V S+A   +  +       +  I V+  +    SL             +A++G+ G
Sbjct: 85  AKLVVASTAATKNKTNVEVDAARDRRIPVIHRSEMLASLMRHH-------KSIAISGSHG 137

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  S V  + +  GLS   I   + ++ +  +  + +   +                 
Sbjct: 138 KSTTTSMVAGMLEAGGLSPTTI-SGAVVTQYGSNAHMGSGHWM----------------- 179

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA        RL  +       TN+  DHI ++ TQ+    A    F   +P    A+
Sbjct: 180 VVEADESDGTMVRLPAL---ISVVTNIDSDHITFYGTQEK-TRATFAQFVRNVPFYGLAV 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------ 299
           +  DD   ++++    +       V  +   +  + V          +SV  +       
Sbjct: 236 LCIDDPGVRKILPEVQDRNIVTYGVS-EDADVRAENVEYNPQDSTFVLSVRDRRDGTRRV 294

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               +  + G   V NAL    + + + I+   +   L        R+  VG  + G +I
Sbjct: 295 VGSIVLNVLGLHNVQNALATTAIALELSIELESIRYALGSFQGTNRRYIHVG-EANGIQI 353

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTD 417
             D+      ++      +   + R+I V+      R+          A + +   I+  
Sbjct: 354 IDDFGTHPAEIKATQTMAKQAGARRVIAVYQPTVVVRNVEAWLEEYPAAFEESAHIIIGQ 413

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAG 466
            +    DP     E    +  ++    R +AI              +  + D +V  G
Sbjct: 414 ADGVEVDPVP-TGEARETLVQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMG 470


>gi|310657783|ref|YP_003935504.1| UDP-n-acetylmuramate--l-alanine ligase [Clostridium sticklandii DSM
           519]
 gi|308824561|emb|CBH20599.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           sticklandii]
          Length = 453

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 143/433 (33%), Gaps = 54/433 (12%)

Query: 60  IPQAIAQGAEAIVVS------SAYSLQDFSATIRSNTPILVVD--------NTRKFLSLF 105
           + + I +GA   +            L  ++A ++ + P L           +  +FL   
Sbjct: 38  LQKLINEGATIYIGHDESQLNEDIDLVVYTAAVKEDNPELAKARRLKLNIIDRAQFLGDI 97

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
             +      EN +A++GT GK++  S    +   +      +     +S    + R+   
Sbjct: 98  MKKY-----ENSIAISGTHGKTTTTSMTTVVFN-ANDEDPTVLVGGNLSVIDGNVRIG-N 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S +++ +A  Y+ S    +                          N+  DH+DY    + 
Sbjct: 151 SEVFITEACEYVDSFLKFY-------------------PKIAIILNVEEDHLDYFSGLEQ 191

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              +  + F   +  +   I   DD     ++K   +     +  G       +      
Sbjct: 192 IEASFAK-FASQVKPDGFVIANGDDEN---ILKALKDVDKTKIYFGRNKNCQAIIHDEVY 247

Query: 286 HNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           ++    T S+   D     F   +PG+  V NA  A        +    +   +E    V
Sbjct: 248 NSSGYATFSLSMDDKFIGRFTLKVPGKHNVLNATAAILSAYVSKLPLDAIKTGIESYTGV 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RFE+ G    G ++Y DYAH    +   L   + I    +  +F         +    
Sbjct: 308 GRRFEYKG-EVNGIKVYDDYAHHPTEVAATLSAAKMIKHHLLYTIFQPHTYTRTKELLDR 366

Query: 403 GKIALDLADIAIVTDDNPRSE-DPEKIR-----AEIIHGIPGFIEKGNRIEAIRTAIEML 456
             ++ + +D+ I++D     E DP  I        I       +  G+  E       +L
Sbjct: 367 FAVSFNDSDVVIISDIYASRENDPGNIHSKDLVEAIKKSGKDALYIGSLDEVQNYLGSVL 426

Query: 457 NKQDVLVVAGKGH 469
             +D++   G G 
Sbjct: 427 EPEDIVFTIGAGD 439


>gi|294783651|ref|ZP_06748975.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480529|gb|EFG28306.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 463

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 148/421 (35%), Gaps = 53/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++ S+A    +          I ++    + L+   +R  G      +A+ GT G
Sbjct: 59  KGADYVIASTAIKETNPEYAYAKENGIKILKRG-ELLAKLLNRETG------IAIAGTHG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +  +   +    G    I S A+  +            ++       + +
Sbjct: 112 KTTTSSMLSAVMLKKDPTIVVGGILPEIKSNARPGKSEY--------FIAEADESDNSFL 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    E +L  +  +I
Sbjct: 164 FM---------------NPEYSVITNIDADHLDVHGNLDNI---KKSFIEFILHTQKESI 205

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D     + + +          S+  +   I+ K +  +  K    + V  +   +F 
Sbjct: 206 ICMDSKNLMDAISKLPEGKSVTTYSIKDENADIYAKNIRIVDRKTIFEVYVNKELKGEFS 265

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L +  G++   + E L +      R++ +         G+ ++
Sbjct: 266 LNIPGEHNIQNSLPVIYLALKFGLNKDEIQEALNQFKGSKRRYDVLYDQELENGYGSKTK 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I+++ + R++ +F               K A    D  I
Sbjct: 326 RVRIVDDYAHHPTEIKATLKAIKSVDNSRLVAIFQPHRYSRVHFLLEEFKDAFVDVDKVI 385

Query: 415 VTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +       E        E ++  I HG    +E  N  + I+  +  + K    +  G G
Sbjct: 386 LLPIYAAGEKNEFNVSSETLKEHINHGN---VELMNEWKDIKRYVTRVKKDSTYIFMGAG 442

Query: 469 H 469
            
Sbjct: 443 D 443


>gi|298372208|ref|ZP_06982198.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275112|gb|EFI16663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 468

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 141/406 (34%), Gaps = 50/406 (12%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASF 132
            +A      S  I  + PI+     +    +      G++     + +TG++GK++    
Sbjct: 71  ETASIEVVKSPGIADSVPIIKSLREKGIPVISEIEFAGRYTNAKTICITGSNGKTTTTML 130

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I + +G   + +G    +                       ++     +  +E SS 
Sbjct: 131 TYHILRNAG---YNVGLAGNVGKSFAM----------------QVAEDNFDYYILEISSF 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            LD   +   +      TN+  DH+D +    Q Y ++K R+ +     +       D  
Sbjct: 172 QLD--GMYSFRADIAIITNITPDHLDRYDYKFQNYVDSKFRILQNQTENDFFIFWAGDST 229

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----DFLFPLP 307
            + E+ KR  +   R +      +  ++     +  K  +  ++  K F        PL 
Sbjct: 230 VANEIEKRGTSIKARKIPFDLTSQTDNVPNYAFVDGKDIIFNNLTNKLFLEMETNNLPLK 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   +YN++ A       G+    +   LE    V  R E+V T      I    A   N
Sbjct: 290 GNHNLYNSMAAGLASQVAGVSKDAIRRSLETFEGVEHRMEYVATVRGVRYINDSKATNVN 349

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP------- 420
           S    L+++ T      +V+   G D+      I   ++  +  +  +  DN        
Sbjct: 350 SCWYALQSMTT-----PVVLILGGTDKGNDYSDISELVSDRVHHLIFLGVDNDKLIKFFG 404

Query: 421 --RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             R+++ +KI          + E  +  E ++ A ++    D +++
Sbjct: 405 CHRNKEGKKI---------PYSEARSMEECVQQAYKVAKNGDTVLL 441


>gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica ST-640]
 gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica 020-06]
          Length = 445

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 170/424 (40%), Gaps = 54/424 (12%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRK 100
           VA +G   DG +F    +  A+  G + + +S   S    D  A  ++   +    +   
Sbjct: 43  VAQIGKMFDGPVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVW--GDI-- 98

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
                 + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T        
Sbjct: 99  ---ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------- 148

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    + +A    + +      +E SS  L+    + ++  A +  N+  DH+D +
Sbjct: 149 ---------VLEAEWQRAGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRY 197

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y + K ++F      +   ++ ADDA+ + + +       +  S+ ++  F   +
Sbjct: 198 DDLLDYAHTKDKIFRG----DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLER 251

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +   +    +  I+ +        PL G     N + A  LC A+G+    +LEH++   
Sbjct: 252 ETGRLKQGNEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P
Sbjct: 306 GLPHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTP 360

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +      + ++  D P      +IR ++        +     EA++TA       D
Sbjct: 361 LRDALKDKAKGVFLIGVDAP------QIRRDLDGCGLNLTDCATLEEAVQTAYAQAEAGD 414

Query: 461 VLVV 464
           ++++
Sbjct: 415 IVLL 418


>gi|254805548|ref|YP_003083769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
 gi|254669090|emb|CBA07647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
          Length = 445

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 159/405 (39%), Gaps = 46/405 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  A+  G + + +S   S +             V+ +         + +  +  + ++A
Sbjct: 60  LKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELLADIVNRRGDKVIA 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++V S V  +C + GL +   G   T                 + +A      
Sbjct: 115 ITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP----------------VLEAEWQREG 158

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +      +E SS  L+    + ++  A +  N+  DH+D +     Y + K ++F     
Sbjct: 159 KKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG--- 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   ++ ADDA+ + + +       +  S+ ++  F   ++   +    +  I+ +   
Sbjct: 214 -DGVQVLNADDAFCRAMKRAGRE--VKWFSLEHEADFWLARETGRLKQGNEDLIATQD-- 268

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G     N + A  LC AIG+    +LEH++    +P R E +G   + G ++
Sbjct: 269 ----IPLQGLHNAANVMAAVALCEAIGLSRNELLEHVKTFQGLPHRVEKIGE--KNGVVF 322

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +D +  +N +      I  + +   + V   G  + Q   P+   +A     + ++  D 
Sbjct: 323 IDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDALAGKAKGVFLIGIDA 379

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P      +IR ++        +     EA++ A       D++++
Sbjct: 380 P------QIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|312128117|ref|YP_003992991.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778136|gb|ADQ07622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 458

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 85/439 (19%), Positives = 167/439 (38%), Gaps = 54/439 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            + I +  + +VVS    L      +     + V+          A R      +NI+A+
Sbjct: 64  DEVIDR-VQLVVVSPGVPLSKRPLVLAHKKGVEVIGEI-----ELAYRFCK--SKNIVAI 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++  + V +I ++        G                     L    +  +S 
Sbjct: 116 TGTNGKTTTTTLVGEILKKQYEDVVVCGNIG------------------LPFIDTVETSS 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T   +E SS  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE  + +
Sbjct: 158 ENTIFVLEISSFQLE--TIKYFKPKVGCILNITPDHLNRHMTMENYIKAKMRIFEN-IDE 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  D+  +++++  A              K     +         +  + EGK  
Sbjct: 215 MGYTVLNYDNNVTRDLIGLAKGNVIVF------SKTKTQFENVVFVENDVIYFTFEGKTQ 268

Query: 301 DFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + +      +PG+  + NAL A    +  GI+   + + L+    V  R EFV     G 
Sbjct: 269 EVMKKDEIFIPGQHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFV-AEINGI 327

Query: 357 RIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + Y D     +++ E  +   +       I++   G D+ +     +  IA  +  + ++
Sbjct: 328 KFYNDSKGTNTDAAEKAISAFKN-----PIILIAGGYDKGESFEKFVSLIAKRVKKVFLL 382

Query: 416 TDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                  +   KI +E+   G   F       EA+R + E     DV++++     +  +
Sbjct: 383 ------GQTKHKIASELEKIGYKNFELVSTLKEAVRKSFESAQNGDVVLLS-PACASWDM 435

Query: 475 VTNGEKKMSVDCDIIREIL 493
             N E++  +  + +RE+L
Sbjct: 436 FENYEQRGRMFKEYVRELL 454


>gi|260550189|ref|ZP_05824402.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
 gi|260406717|gb|EEX00197.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
          Length = 482

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 88/434 (20%), Positives = 150/434 (34%), Gaps = 60/434 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I   A  +VVS+A   ++    A I   TPI+      + L       +G  
Sbjct: 73  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRTPIV---RRAEMLGELMRYRHG-- 124

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S +  +          + PT  I                +  A
Sbjct: 125 ----IAVAGTHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L             +AS           ++ +A   TN+  DH+D ++            
Sbjct: 168 LGESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQ 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    A++  DDA  +E++ R       V++ G+ +   I    V     +   T
Sbjct: 220 FLHNLPFYGLAVVCGDDANIREILPRVGRP---VITYGFNEDNDIRAIDVEQDGMRSHFT 276

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G 
Sbjct: 277 VLRKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGE 336

Query: 352 NSRG---GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              G    ++  DY H    +E  +K  R +    R++++F                  L
Sbjct: 337 FELGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVL 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE------------M 455
              D  ++ +  P  E P  I       +   I    ++E I   I+            +
Sbjct: 397 SQVDQLLLLEVYPAGEKP--IVGADSRTLARSIRLRGQVEPI--LIDPVEGNLQNIMQNV 452

Query: 456 LNKQDVLVVAGKGH 469
           L   D+L+  G G+
Sbjct: 453 LQPNDLLLTQGAGN 466


>gi|94309649|ref|YP_582859.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
 gi|93353501|gb|ABF07590.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
          Length = 883

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 151/430 (35%), Gaps = 35/430 (8%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAV 120
           A  +GA   V +    L           P+   +VD+   F S       G+ P  ++ +
Sbjct: 436 AEQRGAIVEVNAGPGLLMHIKPAEGEPRPVGRAIVDHL--FPSRNDVEDDGRIP--VVGI 491

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK+ VA  V ++ Q SG  +             Q  +               L ++
Sbjct: 492 TGTNGKTVVAKLVARLLQLSGKHTGLACSDGLFLDRRQVEKGGRGDRASWDAGHRILMNR 551

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI-DYHQTQQAYFNAKMRLFEELL 238
            V     E  S  +    L   +   G  TN G  DHI D++   +      +R   +++
Sbjct: 552 AVEAAVFENDSGMILSQGLPYDRCQVGVVTNFGKPDHIGDFYVEDEDRMYNVLRTQVDVV 611

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV------- 291
            K   A+I A DA    +++ A      V+  G       +    A   +          
Sbjct: 612 LKTGVAVINAADA---RLVEMAELCDGDVIFFGLSADLPAIATHRAAGKRAVFVRDGKVV 668

Query: 292 -------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--VV 342
                  T   +       +     FQ+ N L A     A+GI + L+   +       V
Sbjct: 669 LATGNSETALTDVSAIPLTYAGRVAFQIENVLAAVATGWALGISNDLIRAGIVTFDVGQV 728

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
                F      G  + VD AH + +LE +   +    S R ++VFG G  R        
Sbjct: 729 DVPGRFTLFEHHGATVVVDDAHNAPALEALAAALDRFPSERRMLVFGAGVQRRDEDLIEQ 788

Query: 403 GKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIE 454
           GK+     D   + +D       P +E    ++  +  G  +   I++G R  A+  A+ 
Sbjct: 789 GKVIGATFDRVFLCEDQSVKRELPETEARALLKKGLYEGRRVTKIIDEGARRAAVEAALA 848

Query: 455 MLNKQDVLVV 464
            L   D+LV+
Sbjct: 849 QLVAGDLLVL 858


>gi|167764158|ref|ZP_02436285.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
 gi|167698274|gb|EDS14853.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
          Length = 444

 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 134/362 (37%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+   +G    I +        
Sbjct: 94  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGN-------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++ +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 --------SLALQVAMEKHDYYVIELSSFQLDN--MYKFRANIAVLMNITPDHLDRYDHC 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P+++      D    +E+ K    A     +   +   I   + 
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKEDGAIAYVED 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +   + +  ++E ++      L G   +YN+L A       GI    + + L     V
Sbjct: 250 GEVEINEPIAFNMEQEE----LALRGTHNLYNSLAAGISANLAGIRKEDIRKALSDFKGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V T  RG +   D   T+  +      ++++T+    V+   G D+      I 
Sbjct: 306 EHRLEKVAT-VRGVQFINDSKATN--VNSCWYALQSMTTKT--VLILGGKDKGNDYTEIE 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    + +  +   N   E        +  G+P    +    +A+  A ++  K + +
Sbjct: 361 DLVRSKCSALVYLGLHN---EKLHGFFDRL--GLPVADVQTGMKDAVDAAFKLARKGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|195952962|ref|YP_002121252.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
 gi|254766006|sp|B4U813|MURC_HYDS0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|195932574|gb|ACG57274.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
          Length = 449

 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 156/439 (35%), Gaps = 65/439 (14%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSL--------FASRL 109
           I +   +GA   +   A ++      + S+    V +   K   L L         A   
Sbjct: 44  IKELKEKGATIYIGHDAKNVIGKEVVVYSSAISNVNEELLKAKELGLQVISRGDMLADLF 103

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
             K     +A++G+ GK++  S +  I   +GL      PT  I         T  S   
Sbjct: 104 RMK---EGIAISGSHGKTTTTSMISHISHIAGLD-----PTVLIGGI----LQTFGSNAV 151

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L K+   +S    +  S               +  +    TN+ ++HI Y++  +    A
Sbjct: 152 LGKSELLISEADESDGSFL------------KLNSVINVVTNIDKEHIGYYKDYEDIKEA 199

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            ++ F   +P    +++  DD   + ++ + H    ++++ G +      K +    +  
Sbjct: 200 FVK-FINNVPFYGASVVNIDDTGVRSILSKIHK---KIITYGIESGDFQAKNIVFNSDNT 255

Query: 290 QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  +  +G   +     +PG   VYNAL +  +   + I+  ++ + L+       R EF
Sbjct: 256 RFDVFYKGIKLNTIELQIPGIHNVYNALASIAVSTLMEIEQPVIRDALKSFKNAKRRIEF 315

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           VG  +    IY DY H    ++ + + +++      I+VVF                   
Sbjct: 316 VGEKNTN-LIYDDYGHHPTEIKSVYEALKSKYKDKNIVVVFQPHRYSRTYYLIDDFVDLF 374

Query: 408 DLADIAIVTDDNPRSED----------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              D   + D    SE+            K+  E    IP   E  +R++ ++       
Sbjct: 375 KSLDKVFLLDIYGASEENTFGISSLDMINKVSKEECVYIPSKEELFDRLDELK------- 427

Query: 458 KQDVLVVAGKG------HE 470
              V+V  G G      HE
Sbjct: 428 -DSVIVFMGAGSIGQWSHE 445


>gi|149924619|ref|ZP_01912973.1| cyanophycin synthetase [Plesiocystis pacifica SIR-1]
 gi|149814504|gb|EDM74091.1| cyanophycin synthetase [Plesiocystis pacifica SIR-1]
          Length = 957

 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 134/380 (35%), Gaps = 35/380 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I +VTGT+GK++V+  +  I + SG +   +G T+T   +    R  +        A  
Sbjct: 491 PIASVTGTNGKTTVSRMLAHILKMSGKT---VGLTTTDGVYIDGERTVSGDMTGPVSARM 547

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L    V    +E +  GL +  L       G+  N+  DH+      T +     K  +
Sbjct: 548 VLRDPSVDAAVLETARGGLLRAGLGYRANNVGAVLNVQADHLGLGGIDTIEQLAAVKRIV 607

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKKVCAI 285
            E        A++ ADD    ++           ++   +   +            +   
Sbjct: 608 VE---VSRDCAVLNADDEQCLKMADYTKAERIAYVTRNPKHALVREHIRAGGAACVLEEG 664

Query: 286 HNKQQVTISVEGKDFDFLFPLPGE--------FQVYNALVAAGLCIAIGIDSALVLEHLE 337
            N Q +T+   G     L+             F V NA+ AA +   + +    +   L 
Sbjct: 665 INGQMITLYDRGSHIPLLWTHLIPATLEGKALFNVQNAMFAALMARVMKVKIDNIRVGLR 724

Query: 338 KLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
                  +        +    ++ +DY H   ++  + +   ++  +GR + V    GDR
Sbjct: 725 TFDTTFFQAPGRLNVFDDLPFKVILDYGHNPAAVGAMAETAASMEVNGRRLCVLAAPGDR 784

Query: 395 DQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIR-----AEIIHGI--PGFIEKGNRI 446
                  + K A    D  IV  DD+ R     ++      A I  G+         +  
Sbjct: 785 RDEDIVAIAKQAAPHFDAFIVRRDDSLRGRKVGEVTGILMGALIGAGVSPSKVEVIEDEQ 844

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
            AI+ A+E   + D+LV+ G
Sbjct: 845 AAIQAALERGERGDLLVIFG 864


>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
 gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
          Length = 492

 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 150/406 (36%), Gaps = 40/406 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS    L +       ++ I  +         F   +       I AVTGT+GKS
Sbjct: 86  ASRIVVSPGVPLSEPILAYAMDSGIPTISELGFAAEAFPKAV------KIAAVTGTNGKS 139

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V +F  QI Q++G+ +F  G   T  S A       PS     +A             +
Sbjct: 140 TVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFKFPSDDPPYQA-----------AVL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L+           G   NL  DH++ H++ + Y   K RLFE  +     +II 
Sbjct: 189 EVSSYQLELP--GSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFER-MDSSKLSIIP 245

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306
             D + ++V         +  S   +     L  V      ++  + V     +    L 
Sbjct: 246 HADEFLRKVA-------YKYNSGSTKAWLGALPGVQLDSQARRAVVVVPTTKAEARLYLS 298

Query: 307 ----PGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                G     NA  A    L + +G+D   +   + +L  +P R + VG + +G     
Sbjct: 299 GLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWIN 358

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDD 418
           D   T+  ++     I+ +   + +++ G           +  K   D      AIVT  
Sbjct: 359 DSKATN--VDAAYTGIKGLADRKAVILLGGLAKVLDEDGSLGFKKLSDLLQNHRAIVT-F 415

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  EK   E    IP F       +A+  A ++  + D++++
Sbjct: 416 GAFGEQIEKELKEANVSIPCF-RSLTMEDAVARAEKLSKQGDIILL 460


>gi|328945583|gb|EGG39734.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1087]
          Length = 459

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 141/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q+    G +    G     +S       +   
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQTASSK-- 170

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                             + +E SS  L    ++         TNL   H+DYH + + Y
Sbjct: 171 ----------------DTLVMELSSFQLI--GIEDFHPQIAVITNLMPTHLDYHGSVEEY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +         +          K   A  
Sbjct: 213 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQATVMPFSTTE--------KVDGAYL 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 264 EGDVLTFRGEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGQVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+    PR +     RA    G+  +++  +  +A   A       D++++
Sbjct: 380 G-LKKMVILGQSAPRVK-----RAADQAGV-SYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|293375146|ref|ZP_06621434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292646252|gb|EFF64274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 460

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 118/351 (33%), Gaps = 23/351 (6%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AIV               +N  I+ V+  ++    F      +    ++AVTGT GK++ 
Sbjct: 63  AIVTDRPI----GHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIAVTGTCGKTTT 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               + I +             T+ S       T     +L+  +    S          
Sbjct: 119 KDMTRHILKH------FYKTEGTVKS-------TNGESKHLSYLMKLNDSVEAAVYETAV 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           ++ G  +      K   G  TN+G DH+D  +T + Y  AK  + + +  K    I+ AD
Sbjct: 166 AAPGYIKKSSRYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEK-GTLILNAD 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   K++             VG +        +  +       ++V  K +    P  G 
Sbjct: 225 DDNIKKISLEDFKGKIIYYGVG-ENSDYQASNIEFVPKGMSYILTVNNKRYKVFIPGYGV 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            QVYN++ A      +GI     ++ L     +   FE +   ++   I   +     SL
Sbjct: 284 HQVYNSMAAIAAAYEVGISYRDSIKLLPSFKHLNSHFEVMKGLNQCQLIVDTWNINPTSL 343

Query: 370 EMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGKIALDLADIAIVT 416
           E  +K +  I   R  +      D      +     +G +        ++T
Sbjct: 344 EASIKTMCEIAKNRKKIALVGSIDALGKNSRQLHQKVGDMICQYDLDVLIT 394


>gi|167773014|ref|ZP_02445067.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
 gi|167664947|gb|EDS09077.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
          Length = 453

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 141/410 (34%), Gaps = 41/410 (10%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA+ IV ++A      +  A   S TP +       FL+           E+ + V GT
Sbjct: 68  AGADLIVYTAAIMDDNPELRAAFASKTPTVERAELLGFLTGL--------YEDCICVCGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + + Q+   +GL      PT+ I       +L        A   S +  +   
Sbjct: 120 HGKTTTTAMLTQMLLGAGLD-----PTAVIGG-----KLPAIGGNGRAGESSLMVCEACE 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                   H L  H             N+  DH++Y  T +    +  +  +        
Sbjct: 170 FK-----DHFLQLH------PDLSVILNVDADHLEYFGTIENIIKSFHKFAD---MTTRT 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDF-D 301
            I+   D  S   ++  +     +++ G+   F +    +     + +  +   G+    
Sbjct: 216 IIVNGSDPNSMRAVEGINGK--EIITFGWDEHFDYYPANIRRKGAQAEFDLCCGGRALTH 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   + NA  A    I  G+    + EHL +      RFE +G    G  I  D
Sbjct: 274 LTLHVPGLHNILNATAACAAAIKSGVPVTALGEHLAQFRGAGRRFEILG-EVHGVTIADD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    + + L+  R +   R+  VF                 AL LAD  ++++    
Sbjct: 333 YAHHPAEIAVTLRAAREMDFRRVWAVFQPFTYSRTKLLMDDFAKALSLADRVVMSEIMGS 392

Query: 422 SED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E        +++   IPG +      E     ++     D+++  G G 
Sbjct: 393 REKNTEGVYTSQLAEKIPGSVWFAGFEEIADYVMKHAESGDLVITLGCGD 442


>gi|119963916|ref|YP_947471.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter aurescens TC1]
 gi|189028970|sp|A1R5F9|MURC_ARTAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119950775|gb|ABM09686.1| UDP-N-acetylmuramate--alanine ligase [Arthrobacter aurescens TC1]
          Length = 456

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 96/425 (22%), Positives = 159/425 (37%), Gaps = 54/425 (12%)

Query: 66  QGAEAIVVSSAYSLQDFS-----ATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPE 115
            GA   V   A +L D       + IR++ P LV         L      A+ + G    
Sbjct: 55  AGARIAVGYDAGNLGDAQTIVAGSAIRADNPELVAAREAGLPVLHRSEALAATMAGH--- 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            ++ V GT GKS+  S V  + + +G   SF IG  + + +   +    +          
Sbjct: 112 RVVTVAGTHGKSTTTSMVAVLLKEAGLDPSFAIG--ANVPALGVNAAHGSSD-------- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                  +     + S      +R      +    TN+  DH+D++ T +A F A    F
Sbjct: 162 -------IFVAEADESDGSFLNYR-----PLIAVVTNVEADHLDHYGTPEAVF-ASFDDF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             LLP +   +  +DDA ++ +  R A     RVL+ G                   V++
Sbjct: 209 AALLPAQGVLLACSDDAGARALADRTASKGTTRVLTYGTSDD---ADIRLHDGGPGDVSV 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +++G        +PG     NA  A  + + +G++       L        RFE  G   
Sbjct: 266 ALDGGVHKLELQVPGRHNALNAAAAFAVAVELGVEPGAAAAALGHFTGASRRFELKG-RG 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           RG R+Y DYAH    +   L   R++    ++ V+F         +       ALDLAD 
Sbjct: 325 RGVRVYDDYAHHPTEVRAALSAARSVAGDNKVHVLFQPHLFSRTREFSQEFAAALDLADT 384

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A+V D  P  EDP        I   +++G     ++            + ++ DV++  G
Sbjct: 385 ALVLDIYPAREDPIPGVTSTLITDHLVNGRLVSADEAV-----DAVAAVASEGDVVLTVG 439

Query: 467 KGHET 471
            G  T
Sbjct: 440 AGDVT 444


>gi|312794105|ref|YP_004027028.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181245|gb|ADQ41415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 458

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 168/439 (38%), Gaps = 54/439 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +  + +VVS    L      +     I V+          A R      +NI+A+
Sbjct: 64  DEAVDK-VQLVVVSPGVPLSKRPLVLAHKKGIEVIGEI-----ELAYRFCK--SKNIVAI 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++  + V +I ++        G                     L    +  +S 
Sbjct: 116 TGTNGKTTTTTLVGEILKKQYEDVVVCGNIG------------------LPFIDTIETSS 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T   +E SS  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE  + +
Sbjct: 158 ENTIFVLEISSFQLE--TIKYFKPKVGCILNITPDHLNRHMTMENYIKAKMRIFEN-IDE 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  D+  +++++  A              K     K      K  +  + EGK  
Sbjct: 215 MGYTVLNYDNNITRDLIGLAKGNVIVF------SKNKCQFKNMVFVEKDTIYFTFEGKTQ 268

Query: 301 DFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + +      +PGE  + NAL A    +  GI+   + + L+    V  R EFV     G 
Sbjct: 269 EIMKKDEIFIPGEHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFV-AEINGI 327

Query: 357 RIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + Y D     +++ E  L+   +      I++   G D+ +        +A  +  + ++
Sbjct: 328 KFYNDSKGTNTDAAEKALRAFES-----PIILIAGGYDKGESFEKFASLVAKKVKKVFLL 382

Query: 416 TDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                  +   KI +E+   G   F       EA+R + E     D+++++     +  +
Sbjct: 383 ------GQTKHKIASELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLLS-PACASWDM 435

Query: 475 VTNGEKKMSVDCDIIREIL 493
             N E++  +  + + E+L
Sbjct: 436 FENYEQRGRMFKEYVNELL 454


>gi|225378135|ref|ZP_03755356.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
 gi|225210016|gb|EEG92370.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
          Length = 459

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 145/431 (33%), Gaps = 56/431 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAVTGTS 124
           A  I+      L  ++A IR + P       +    L  + L G+   + +N +AV+GT 
Sbjct: 63  ASNII--EGIDLIVYTAAIREDNPEFAAAKEKGIPMLSRAELLGQIMDNYQNSIAVSGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S + QI   +            I      N     S +++++A  Y +S     
Sbjct: 121 GKTTTTSMISQILLAAKKDPTI--TVGGILKAIDGNLRVGKSDVFISEACEYTNSF---- 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                             +       N+  +H+D+ +      N+   LF +   +    
Sbjct: 175 ---------------LNFRPKYSIILNIEAEHLDFFKDIHDIRNS-FHLFAKNTKENGAI 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKD-FD 301
           II  +    +E+++       +V++ G      F               T    G+   D
Sbjct: 219 IINGEIENYQEIVEGLAP---QVITYGMSDACDFYPADITFNEKACANFTAMYHGEKVMD 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   V NAL A  L + + I    +L  L        RF++ G    G  +  D
Sbjct: 276 VALNVPGLHNVSNALAAIALALDLKISKEDILAGLSAFGGADRRFQYKGC-VDGVTVIDD 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    +   L   +     R+++VF                  L +AD+ ++ D    
Sbjct: 335 YAHHPTEIRATLTAAKKYPHKRLVLVFQPHTYSRTKAFLNDFAEVLSMADVVVLADIYAA 394

Query: 422 SE---------DPEKIRAE---IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E         D E    E    +H  P F E  N        ++     D+L+  G G 
Sbjct: 395 REKNTFGISSRDIEAKLKEKGTDVHYFPSFTEIEN------FLLKNCINGDLLITMGAGD 448

Query: 470 ETVHIVTNGEK 480
               IV  GE 
Sbjct: 449 ----IVNVGEH 455


>gi|298527810|ref|ZP_07015214.1| cyanophycin synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511462|gb|EFI35364.1| cyanophycin synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 888

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 120/359 (33%), Gaps = 33/359 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     +G T+T   + Q+  L          A   L    V +   E + 
Sbjct: 499 LIAHIMHMSGKK---VGYTTTDGIYIQNRLLYKGDCSGPDSARFVLRDPTVDYAVFETAR 555

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G  TN+  DH+  +   T +     K  L  E +     A++ AD
Sbjct: 556 GGMMRAGLGYDLSDVGVVTNVASDHLGLYGIHTLEQLTRLKC-LVAENVQPSGYAVLNAD 614

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC------AIHNKQQVTISVEGKDF--D 301
           D Y   V     N  C             +KK C      A++++  + +         D
Sbjct: 615 DDY---VYSMQENVSCNTAFFSMNAGNPRIKKHCSSGGTAAVYDEGDIILRKGDWSMLVD 671

Query: 302 FLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNS 353
            +  +P        FQV N L A        +    +   L+       +          
Sbjct: 672 RVINIPLTYFGKAAFQVQNVLAACLAAFVQEVKVEEIRLGLQTFAPSSAQLPGRMNIFEF 731

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              ++ +DYAH  +S+E + + + ++  G    +    GDR        G++A +  D  
Sbjct: 732 EKFKVLIDYAHNPSSMEAMGRFVSSLGMGVSTAILAGTGDRRDKDLQDYGRVAAEYFDRI 791

Query: 414 IV--TDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           IV    D  R  D  K+   I  G          +   +   A+  A++    + ++ +
Sbjct: 792 IVWEDQDYARGRDSMKVMQLIQEGAASSSKKARVLSILDEDHAVDHALQEALPEAIICI 850


>gi|54294640|ref|YP_127055.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
 gi|53754472|emb|CAH15956.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
          Length = 455

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 131/367 (35%), Gaps = 31/367 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  K+   ++AV GT GK++  S +  I  ++G++   +     +SS    +  
Sbjct: 95  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFL--IGGVSSDFNTSAC 150

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 ++ +A  Y S+                       +       NL  DH D +  
Sbjct: 151 LGKGRWFVIEADEYDSAFFDKRPKFMHY------------RPNIAVLNNLEFDHADIYPD 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +PK   AI   DD    EV+ R      R+ ++   G+   + ++
Sbjct: 199 LAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQ--FSRIETLALSGEAEWVAEL 255

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 Q   +   G   +  +PL G+F V N L A       G++  +  + LE+   V
Sbjct: 256 IDDSGSQFNILHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPMVAAKALEQFSPV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVF-GCGGDRDQGKRP 400
             R E V +N  G  +Y D+AH   ++   +    R+    RI  V          G   
Sbjct: 316 KRRLE-VRSNRHGITVYDDFAHHPTAITKTIDALKRSGRHQRIFAVMEFASYTMRTGVHA 374

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                AL   D A V        +P+   ++  +      +    N  E ++  I+ + +
Sbjct: 375 AEMAHALAPVDGAYVL-------EPQDFNLKDFVSSWTCPYKICKNNEEIVKEIIKAVRE 427

Query: 459 QDVLVVA 465
            D ++V 
Sbjct: 428 GDAVLVM 434


>gi|317138866|ref|XP_001816953.2| UDP-N-acetylmuramate--L-alanine ligase [Aspergillus oryzae RIB40]
          Length = 641

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 139/418 (33%), Gaps = 51/418 (12%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V S+A   +  +       +  I V+  +    SL             +A++G+ G
Sbjct: 229 AKLVVASTAATKNKTNVEVDAARDRRIPVIHRSEMLASLMRHH-------KSIAISGSHG 281

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  S V  + +  GLS   I   + ++ +  +  + +   +                 
Sbjct: 282 KSTTTSMVAGMLEAGGLSPTTI-SGAVVTQYGSNAHMGSGHWM----------------- 323

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA        RL  +       TN+  DHI ++ TQ+    A    F   +P    A+
Sbjct: 324 VVEADESDGTMVRLPAL---ISVVTNIDSDHITFYGTQEK-TRATFAQFVRNVPFYGLAV 379

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------ 299
           +  DD   ++++    +       V  +   +  + V          +SV  +       
Sbjct: 380 LCIDDPGVRKILPEVQDRNIVTYGVS-EDADVRAENVEYNPQDSTFVLSVRDRRDGTRRV 438

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               +  + G   V NAL    + + + I+   +   L        R+  VG  + G +I
Sbjct: 439 VGSIVLNVLGLHNVQNALATTAIALELSIELESIRYALGSFQGTNRRYIHVG-EANGIQI 497

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTD 417
             D+      ++      +   + R+I V+      R+          A + +   I+  
Sbjct: 498 IDDFGTHPAEIKATQTMAKQAGARRVIAVYQPTVVVRNVEAWLEEYPAAFEESAHIIIGQ 557

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAG 466
            +    DP     E    +  ++    R +AI              +  + D +V  G
Sbjct: 558 ADGVEVDPVP-TGEARETLVQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMG 614


>gi|229822993|ref|ZP_04449063.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
 gi|229787806|gb|EEP23920.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
          Length = 463

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 144/412 (34%), Gaps = 50/412 (12%)

Query: 64  IAQGAEAI-------VVSSAYSLQDFSATIRSNTPILVVDNTRKFLS----LFASRLYGK 112
           + +G + +       ++   +     +  I  + P++     R          AS +   
Sbjct: 54  MDRGVKVVDGGHPLELLDQDFDFMVKNPGIPYHVPLIEEAQKRGLPIYTDIELASWIA-- 111

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P  I+AVTG++GK++  S++ Q+         Q      I                +  
Sbjct: 112 -PCPIVAVTGSNGKTTTTSWIHQMLAH--RPQGQARLAGNIG---------------VPS 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++   +     + +E SS  L     +  +      TNL   H+DYH +Q+ Y  AK +
Sbjct: 154 LVTANQASPDDVIVMEVSSFQLM--GTEKFRPSIAVMTNLTSAHLDYHGSQEGYEAAKFK 211

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L       ++ A  +  +     +   A+    + +   +      ++   A      + 
Sbjct: 212 LVAN----QTAADFWVYNVTDPTLRAHANQVKAQQVPFSHLPASPEVQAQGAYRQGDALY 267

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E         +PG+  V NAL A  +   +G+ +  +   L     +P R + +  +
Sbjct: 268 FRGEEVAKVSQIGVPGDHNVQNALAAIAVAKLLGVSNQAIQAELSAYAGMPHRLQPIAKS 327

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +  GRI+ + + ++N +      +++ T     +  G G DR      ++  +   +   
Sbjct: 328 A--GRIFYNDSKSTN-MVAATTALKSFTQPIRYI--GGGLDRGNEFDDLIPHLEHVVEAF 382

Query: 413 AIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                     E  EK+       G+P      N  +A   A E     +V++
Sbjct: 383 LY-------GESKEKMARAFQQAGVPAIHLYENLDQASLAAYEAAQAGEVVL 427


>gi|222109851|ref|YP_002552115.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
 gi|221729295|gb|ACM32115.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
          Length = 861

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 148/403 (36%), Gaps = 38/403 (9%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N  + +VD       LFA    G+ P  ++AVTGT+GK++    + Q+    GL    
Sbjct: 450 PRNVGVPMVD------ELFAPGQDGRIP--LVAVTGTNGKTTTTRLIGQLFAAHGLR--- 498

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +G T+T   +    ++ +        A + L    V    +E +  G+ +  L   +   
Sbjct: 499 VGMTNTDGVYVNGRQIDSGDCSGPKSARNVLFHPEVDAAVLECARGGILREGLGFDRCQV 558

Query: 207 GSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM------ 257
              TN+G  DH+   +  T +     K R+  + +  +   ++ A D +   +       
Sbjct: 559 AVVTNVGAGDHLGLNFITTVEDVAVLK-RVIVQNVAADGYGVLNAADPHVAAMASVCPGK 617

Query: 258 ------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                  R H       + G +  ++    + A     + TIS+  ++          FQ
Sbjct: 618 VIFFAVDRHHPLMATHRAQGNRVVYVDGDSIVAAEGSWRETISL--REIPITRGGTIGFQ 675

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSL 369
           V N + A G    +G+    +   L             F   + RG  +  DY H  +++
Sbjct: 676 VENVMAAIGAAWGVGLPWQTIRRGLAGFMNDSDNAPGRFNVMDYRGATVIADYGHNPDAM 735

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI 428
             +++ ++ + + +  VV    GDR         +I     D  ++  D   R     ++
Sbjct: 736 RALVQAVQAMPARQRSVVISGAGDRRDQDIVEQTQILGQAFDDVVLYQDACQRGRADGEV 795

Query: 429 RAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A +  G+ G        E      AI  A+E L   D+ +V 
Sbjct: 796 LALLRQGLQGAPRTRYVTEIHGEFIAIDHALERLQPGDLCLVL 838


>gi|328542967|ref|YP_004303076.1| UDP-N-acetylmuramate-L-alanine ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412713|gb|ADZ69776.1| UDP-N-acetylmuramate-L-alanine ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 468

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 143/428 (33%), Gaps = 53/428 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A     GAE +VVSSA    +          I VV        L          +  
Sbjct: 55  IGHAAENLGGAEVLVVSSAIRRDNPELVAAREKLIPVVRRAEMLAELMRF-------KQA 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  S +  +    GL    I     I+++  + R+     + +    S  
Sbjct: 108 IAIGGTHGKTTTTSLIAALLDAGGLDPTVING-GIINAYGTNARMGAGDWMVVEADESD- 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                   +       TN+  +H+D++        A  R F E 
Sbjct: 166 -------------------GTFVKLPADVAVVTNIDPEHLDHYGDFAGVRAA-FRHFVEN 205

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P    A++  D    + ++ +  +          Q   +    V  +  +   ++  + 
Sbjct: 206 VPFYGFAVMCLDHPEVQSLVGQIEDKRIVTYGANPQAD-VRFTDVAMVGGRSTFSVRFQD 264

Query: 298 KDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +         + + P+PG   V NA  A  +   +G+DS  + + L     V  RF + G
Sbjct: 265 RRTGETGTLSNLVLPMPGLHNVANAAAAIAVAHELGVDSEAIRKGLAGFGGVKRRFTYTG 324

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +   G  I+ DY H    +  +L   R    GR+I V                    + A
Sbjct: 325 SW-NGVEIFDDYGHHPVEIRAVLHAARETAKGRVIAVVQPHRYSRLASLFDDFSTCFNDA 383

Query: 411 DIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRI-------EAIRTAI-EMLNKQD 460
           D  IV       E P     R +++ G+     +G+R        EA+   + E     D
Sbjct: 384 DTVIVAPVYAAGEQPIEGAGRDDLVTGLK---TRGHRSVFALEGPEALAALVAEHARPGD 440

Query: 461 VLVVAGKG 468
            +V  G G
Sbjct: 441 YVVCLGAG 448


>gi|313888013|ref|ZP_07821691.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845968|gb|EFR33351.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 464

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 134/413 (32%), Gaps = 41/413 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G + ++ + A S  +          I +VD    FL            +  +AV+GT G
Sbjct: 69  NGMDLVIFTDAISFDNEEYVEAVKQKIDLVDRA-SFLGAVMKNY-----DKSIAVSGTHG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S  S + +I +        + PT  +    +D                   ++   + 
Sbjct: 123 KTSTTSMLTEIIKDL-----DVNPTIMLGGQLKDIDGNIKIGDE-----KLFLTEACEYK 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +                        N+  DH+DY            + + + L +    +
Sbjct: 173 ANILKYF-----------PTTEIILNIDEDHLDYFDNIDHIIRT-FKGYVDNLRESDYVV 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDF 302
           I  DD  +K ++       C+  + G +     + K    + +   T  +   + K    
Sbjct: 221 INIDDENAKTLLPI---ENCKFFTFGIKNHADLMAKNIEFNEEGFPTYDLYLRDEKVAHV 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G   + N+L A G     GI     +  L+    V  R E  G   +G ++  DY
Sbjct: 278 ELSVLGRHNILNSLAAIGAAYVNGISIKDSIAGLKSYKGVERRLEVKGF-YKGAKVMDDY 336

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH    ++  +  I+    G++  VF                 + D +D+ I+TD     
Sbjct: 337 AHHPTEIKSSIHAIKNACKGKLYTVFQPHTFTRTKLLLDAFANSFDESDVIIITDIYAAR 396

Query: 423 E-DPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E D   I     R  I              + ++   E ++K D+ V  G G 
Sbjct: 397 EKDYGDIHSKTLRNAIADHRDNAFYISGFEDIVKFVKENISKDDIFVTMGAGD 449


>gi|148359297|ref|YP_001250504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
 gi|148281070|gb|ABQ55158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
          Length = 441

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 131/365 (35%), Gaps = 27/365 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  K+   ++AV GT GK++  S +  I  ++G++   +     +SS    +  
Sbjct: 81  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFL--IGGVSSDFNTSAC 136

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 ++ +A  Y S+                       +       NL  DH D +  
Sbjct: 137 LGKGRWFVIEADEYDSAFFDKRPKFMHY------------RPNIAVLNNLEFDHADIYPD 184

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +PK   AI   DD    EV+ R      R+ ++   G    + ++
Sbjct: 185 LAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQ--FSRIETLALSGDAEWVAEL 241

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 Q   +       +  +PL G+F V N L A       G++  +  + LE+   V
Sbjct: 242 IDDSGSQFKILHNGVMVAEVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSPV 301

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V +N  G  +Y D+AH   ++   +  ++     + I                 
Sbjct: 302 KRRLE-VRSNRHGVTVYDDFAHHPTAITKTIDALKRSGRHQRIFAVMEFASYTMRTGVHA 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           G++A  LA +     D     +P+   ++  +   I  +    N  E ++  I+ + + D
Sbjct: 361 GEMAHALAPV-----DGAYVLEPQDFNLKDFVSSWICPYKICKNNGEIVKEIIKTVREGD 415

Query: 461 VLVVA 465
            ++V 
Sbjct: 416 AVLVM 420


>gi|329954172|ref|ZP_08295267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
 gi|328528149|gb|EGF55129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
          Length = 444

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 135/363 (37%), Gaps = 41/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+   +G    I +        
Sbjct: 94  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGN-------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++ +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 --------SLALQVAMEKHDYYVIELSSFQLDN--MYKFRANIAVLMNITPDHLDRYDHC 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P+++      D    +E+ K    A     +   +   I   + 
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHLYPFAAVKEDGAIAYVED 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +   + +  ++E ++      L G   +YN+L A       GI    + + L     V
Sbjct: 250 GEVEINEPIAFNMEQEE----LALHGTHNLYNSLAAGISANLAGIRKEDIRKALSDFKGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V T  RG +   D   T+  +      ++++T+    V+   G D+      I 
Sbjct: 306 EHRLEKVAT-VRGIQFINDSKATN--VNSCWYALQSMTTKT--VLILGGKDKGNDYTEIE 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             +    + +  +   N      EK+       G+P    +    +A+  A ++  K + 
Sbjct: 361 DLVRTKCSALVYLGLHN------EKLHEFFDRFGLPVADVQTGMKDAVDAAFKLAQKGET 414

Query: 462 LVV 464
           +++
Sbjct: 415 VLL 417


>gi|168182271|ref|ZP_02616935.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Bf]
 gi|182674522|gb|EDT86483.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Bf]
          Length = 873

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 133/361 (36%), Gaps = 38/361 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     +G T+T   +  +  +          A + L+++ V    +E + 
Sbjct: 494 LIAHILSISGKK---VGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +     K  L  E + K+   +I AD
Sbjct: 551 GGLIKAGLPYDLADVGIITNVTEDHLGLGDINTLEDMAYVKA-LVGEAVKKDGYVVINAD 609

Query: 250 DAYSKEVMKRAHNAGC-----------------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           D  S  ++ R  +                    + L +   G  I+LKK+        V 
Sbjct: 610 DEASINIINRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKINKNEEIINV- 668

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGT 351
                            + V NA+ A    IA+G+D   + + LE  +        F   
Sbjct: 669 -----NKIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFNNEEQNPGRFNMY 723

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D
Sbjct: 724 NVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFD 783

Query: 412 IAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              + +D + R     +I   +  GI              +  EA++ AIE  N  D+++
Sbjct: 784 YIYIKEDRDKRGRKDGEIVDLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVI 843

Query: 464 V 464
           +
Sbjct: 844 M 844


>gi|54297666|ref|YP_124035.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
 gi|53751451|emb|CAH12869.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
          Length = 455

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 132/365 (36%), Gaps = 27/365 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  K+   ++AV GT GK++  S +  I  ++G++   +     +SS    +  
Sbjct: 95  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFL--IGGVSSDFNTSAC 150

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 ++ +A  Y S+                       +       NL  DH D +  
Sbjct: 151 LGKGRWFVIEADEYDSAFFDKRPKFMHY------------RPNIAVLNNLEFDHADIYPD 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +PK   AI   DD    EV+ R      R+ ++   G+   + ++
Sbjct: 199 LAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQ--FSRIETLALSGEAEWVAEL 255

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 Q   +   G   +  +PL G+F V N L A       G++  +  + LE+   V
Sbjct: 256 IDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSPV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V +N  G  +Y D+AH   ++   +  ++     + I                 
Sbjct: 316 KRRLE-VRSNRHGVTVYDDFAHHPTAITKTIDALKRSGRHQRIFAVMEFASYTMRTGVHA 374

Query: 403 GKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           G++A  LA +     D     +P+   ++  +      +    N  E ++  I+ + + D
Sbjct: 375 GEMAHALAPV-----DGAYVLEPQDFNLKDFVSSWTCPYKICKNNGEIVKEIIKTVREGD 429

Query: 461 VLVVA 465
            ++V 
Sbjct: 430 AVLVM 434


>gi|49475854|ref|YP_033895.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella henselae str.
           Houston-1]
 gi|59798262|sp|Q6G2Q6|MURC_BARHE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49238662|emb|CAF27908.1| UDP-N-acetylmuramate--alanine ligase [Bartonella henselae str.
           Houston-1]
          Length = 475

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 148/438 (33%), Gaps = 55/438 (12%)

Query: 50  VGNKED-GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            G +   GH     A   G AE +V+S+A    +          + +V        L   
Sbjct: 51  KGIQVHVGHH----AENLGDAEFVVLSTAIKKTNPEYIAAKERHLPLVKRAEMLAELMRF 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           R         +AV GT GK++  S +  +   +G     +     I+++  + R+     
Sbjct: 107 R-------RAIAVGGTHGKTTTTSMIAALLD-AGSFDPMVINGGIINAYGTNARMGEGDW 158

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + +    S                          +       TN+ R+H+D++ +  A  
Sbjct: 159 MVVEADESD--------------------GTFLKLPADIAVVTNIDREHLDHYGSFAAVR 198

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +A  R F E +P    A++  D    + +  R  +          Q     L  +     
Sbjct: 199 DA-FRQFVENVPFYGFAVLCIDHPEVQSLASRIDDRWVITYGANPQADIRFL-NLSMDGQ 256

Query: 288 KQQVTISVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           K    + +  +         + + P+ G+  V NA  A  +   +GI +  + + L    
Sbjct: 257 KTYFDVFMRSRKTGRETELKNLVLPMSGQHNVSNATAAIAIAHELGISNESIKKGLAGFG 316

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  RF  +G+  RG  I+ DY H    ++ +L   R    GR+I +             
Sbjct: 317 GVKRRFTQIGSW-RGVEIFDDYGHHPVEIKAVLCAARESAKGRVIAIAQPHRYSRLYHLF 375

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKI----RAEIIHGIPGFIEKGNR-IEAIRTAIEM 455
                  + ADI ++       E+P  I      E++  I     +  R I+ +   + +
Sbjct: 376 DDFAACFNDADIVLIAPVYAAGEEP--ITGFGARELVEHIQMAGHRDVRLIDCLEDVVSI 433

Query: 456 ----LNKQDVLVVAGKGH 469
                   D +V  G G+
Sbjct: 434 VSTFSKSGDYVVFLGAGN 451


>gi|290476452|ref|YP_003469357.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
 gi|289175790|emb|CBJ82593.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
          Length = 491

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 146/423 (34%), Gaps = 51/423 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA  +V S+A S  +          I V+    + L+      +G      +A+ GT G
Sbjct: 77  RGASVVVASTAISADNPEIIAAREARIPVIRRA-EMLAELMRYRHG------IAIAGTHG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I  ++GL    +      ++       T+         ++       + +
Sbjct: 130 KTTTTAMIAGIYAQAGLDPTFVNGGLVKAAGTHARLGTS------RYLIAEADESDASFL 183

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +Q            F   LP    A+
Sbjct: 184 ---------------HLQPMVAVITNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGRAV 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFL 303
           +  DD   KE++ R       + + G+ +   I +        +   TIS +   +   +
Sbjct: 229 MCIDDPVVKELIPRIGR---YITTYGFSEEADIRITHYEQKAAQGFFTISRDDLPELHVV 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR 357
              PG     NA  A  +    GI+ A +L  L +      RF+F+G       N + GR
Sbjct: 286 LNAPGRHNALNATAAVAVATEEGINDAAILASLAEFQGTGRRFDFLGEFSLKHINGKEGR 345

Query: 358 I--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +    DY H    ++  +K  R      RI+++F                  L   D+ +
Sbjct: 346 VMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANILSQVDVLL 405

Query: 415 VTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           + D     E P        +   I   G    I   +  E I   +  +    D+++V G
Sbjct: 406 MLDVYSAGETPIPGADSRSLCRTIRSRGKLDPIFVSD-SEQISAMLSQVIENNDLVLVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|189485641|ref|YP_001956582.1| UDP-N-acetylmuramate-L-alanine ligase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|229620440|sp|B1GYM8|MURC_UNCTG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170287600|dbj|BAG14121.1| UDP-N-acetylmuramate-L-alanine ligase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 450

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 110/293 (37%), Gaps = 15/293 (5%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++ VEA        RL     I    TN+  DH+DY+ + +    A ++     +P   
Sbjct: 155 DYIVVEADESDGSFLRLS---PIITVVTNIDNDHLDYYDSMENLKEAFVKHI-NCIPFYG 210

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF- 300
            AII +D+   ++++ +      R ++ G  G   I    +  + N     +    K   
Sbjct: 211 TAIICSDNEVVRKIIPQITR---RYITYGLMGNPDIKASNIKVLKNHTSFDVFYMRKKVG 267

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + G+  V N+L A G+ + +GI  + + + + K   V  R E  G    G  +  
Sbjct: 268 SVCMKILGKHNVSNSLAAIGVGLRLGISFSSIADTINKFDGVSRRLEIKGEK-NGMMVID 326

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD 418
           DY H    +   L+ I+     R +VV        R +      G+ +   AD   V D 
Sbjct: 327 DYGHHPTEVAATLRAIKLFWPERRLVVLFQPHRYTRTKQLFNEFGR-SFSDADFVKVLDI 385

Query: 419 NPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               E P  E     I+  +     K  +   +    + L+  DV++  G G 
Sbjct: 386 YSAGEQPIDEVTSDLILESLVSNKCKAEKFSDLEEFSKGLSVGDVVLTLGAGD 438


>gi|296107344|ref|YP_003619044.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
 gi|295649245|gb|ADG25092.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 455

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 131/365 (35%), Gaps = 27/365 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  K+   ++AV GT GK++  S +  I  ++G++   +     +SS    +  
Sbjct: 95  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFL--IGGVSSDFNTSAC 150

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 ++ +A  Y S+                       +       NL  DH D +  
Sbjct: 151 LGKGRWFVIEADEYDSAFFDKRPKFMHY------------RPNIAVLNNLEFDHADIYPD 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +PK   AI   DD    EV+ R      R+ ++   G    + ++
Sbjct: 199 LAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQ--FSRIETLALSGDAEWVAEL 255

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 Q   +       +  +PL G+F V N L A       G++  +  + LE+   V
Sbjct: 256 IDDSGSQFKILHNGVMVAEVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSPV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V +N  G  +Y D+AH   ++   +  ++     + I                 
Sbjct: 316 KRRLE-VRSNRHGVTVYDDFAHHPTAITKTIDALKRSGRHQRIFAVMEFASYTMRTGVHA 374

Query: 403 GKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           G++A  LA +     D     +P+   ++  +   I  +    N  E ++  I+ + + D
Sbjct: 375 GEMAHALAPV-----DGAYVLEPQDFNLKDFVSSWICPYKICKNNGEIVKEIIKTVREGD 429

Query: 461 VLVVA 465
            ++V 
Sbjct: 430 AVLVM 434


>gi|225872731|ref|YP_002754188.1| UDP-N-acetylmuramate--alanine ligase [Acidobacterium capsulatum
           ATCC 51196]
 gi|254763733|sp|C1F455|MURC_ACIC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225793538|gb|ACO33628.1| UDP-N-acetylmuramate--alanine ligase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 458

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 133/399 (33%), Gaps = 45/399 (11%)

Query: 85  TIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            I    P +     RK        + A  +  K+    +AV G  GK++  S +  +   
Sbjct: 73  AIDEENPEVREARARKIPVIQRAEMLAELMRLKYG---IAVAGMHGKTTTTSMIASVLAA 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                 ++ PT  +                   AL   +  G +H  V  +    D+  L
Sbjct: 130 -----GELDPTVVVGGRVD--------------ALGSNARLGNSHYLVAEADES-DRSFL 169

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +  I    TNL R+H+D ++      +A +  F   +P     +   D+     ++ R
Sbjct: 170 K-LSPILTVVTNLDREHMDCYRDMADVEDAFLE-FMNRVPFYGANVACIDNPQLAALLPR 227

Query: 260 AHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNAL 316
                 RV + G      F+      A   + +  I S +     F   +PG   V NA 
Sbjct: 228 VRR---RVFTYGTSLGADFVVRMLPPAPEVRSRFEIASAQSVLGPFDLHVPGIHNVLNAA 284

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  + + + +    +++ L+    V  RF+  G    G  I  DY H    +   L+  
Sbjct: 285 AAVAIAVQLDLKEQAIVQGLKSFRGVDRRFQLKGV-VDGITIIDDYGHHPTEIRATLRAA 343

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRA 430
           R      I V+F                 +   A    + D    SE P        +  
Sbjct: 344 RDCGYANIHVLFQPHRYSRTRDLLDEFVTSFADASTVEMLDIYAASEAPLPGITSAALVQ 403

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I  G PG     +  EA+   ++     D+++  G G+
Sbjct: 404 SI--GQPGVRYAASTEEAVTAILDRAAPGDLILTLGAGN 440


>gi|332872846|ref|ZP_08440811.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
 gi|332739007|gb|EGJ69869.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
          Length = 482

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 146/432 (33%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I   A  +VVS+A   ++          + +V    + L       +G    
Sbjct: 73  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRVPIVRRA-EMLGELMRYRHG---- 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV G  GK++  S +  +          + PT  I                +  AL 
Sbjct: 125 --IAVAGAHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAALG 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                       +AS           ++ +A   TN+  DH+D ++            F 
Sbjct: 170 ESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFL 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DDA  +E++ R       V++ G+ +   I    V     +   T+ 
Sbjct: 222 HNLPFYGLAVVCGDDANIREILPRVGRP---VITYGFNEDNDIRAIDVEQDGMRSHFTVL 278

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G   
Sbjct: 279 RKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFE 338

Query: 354 RG---GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            G    ++  DY H    +E  +K  R +    R++++F                  L  
Sbjct: 339 LGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQ 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE------------MLN 457
            D  ++ +  P  E P  I       +   I    ++E I   I+            +L 
Sbjct: 399 VDQLLLLEVYPAGEKP--IVGADSRTLARSIRLRGQVEPI--LIDPVEGNLQNIMQSVLQ 454

Query: 458 KQDVLVVAGKGH 469
             D+L+  G G+
Sbjct: 455 PNDLLLTQGAGN 466


>gi|260905301|ref|ZP_05913623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Brevibacterium linens BL2]
          Length = 488

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 126/368 (34%), Gaps = 36/368 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSR +  G I+VA  G   DG  F   A+  GA  I+  S  +L D +       P
Sbjct: 29  GVVTDSREVGPGDIYVARRGESFDGIEFAAAAVEAGAALIIGESVPTLDDAT------LP 82

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            ++V +  + L   A        E     ++A+TG+ GK++V      +           
Sbjct: 83  TVLVSDATEALGQLAKCNIESLREAGEITVIAITGSVGKTTVKDLAADLLA--------- 133

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G   T+                   AL    +     + + A S G   +    ++    
Sbjct: 134 GEDETV----WPPNSYNNEVGVPLTALRAGETTRFLVLEMGARSIGNLAYLTSLVRPDIA 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
               +G  H     + +    AK  L E L    S AI+ ADD+    + +        +
Sbjct: 190 VELAVGTAHSGVFGSIENTARAKAELVESL-SAGSVAILNADDSRVAGMREVLSPDVSTL 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVT----------ISVEGKD-FDFLFPLPGEFQVYNAL 316
                +     +    ++     VT          +++ G++  D    L GE  V NAL
Sbjct: 249 WFSQRESLPEWVADEDSVVRGTGVTTDASGHATFSLNLPGEEPQDVRLALIGEHHVGNAL 308

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
            +A +  A G+    ++  L            +  +  G  +  D Y     S+   LK 
Sbjct: 309 ASAAIAHACGVGMKSIVTTLSTSSAASRWRMELIDSPSGVTVLNDAYNANPESMRASLKT 368

Query: 376 IRTITSGR 383
           + ++  G 
Sbjct: 369 LASMGRGD 376


>gi|222474750|ref|YP_002563165.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Florida]
 gi|222418886|gb|ACM48909.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Florida]
          Length = 482

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 134/412 (32%), Gaps = 46/412 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A    +           LV+  T        +          + V+G+ GK+
Sbjct: 78  ADVVVYSNAIKDDNVELQSAIAAGKLVLRRTELLSKALGAG-------RTIVVSGSHGKT 130

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +  I + +G+      PT  I   A                 +Y    G   V  
Sbjct: 131 STTGMIASIMEHAGMD-----PTVFIGGIAFHYGN------------NYKMGAGEWAVVE 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S          +       TNL  +H D +   +A        F   +     +++ 
Sbjct: 174 GDESDAG----FTELPCEIAVVTNLEWEHPDKYSCLEALERV-FSDFLRNVKAGGASVMP 228

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFD--FLF 304
                S+      + A C  ++ G +G  +       + +     I  + G++       
Sbjct: 229 -----SRLSFTLGNGAKCSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEICCGVRL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG   V NAL AA +   IG+    +   LE    V  RFE +  N  G     DYAH
Sbjct: 284 PVPGRHNVENALAAAAVAKHIGVGCNYIKAGLEGFMGVGRRFEII-ANVGGVTFVDDYAH 342

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +E      + + TSGR+I +                  A+   D  I+TD  P  E
Sbjct: 343 HPTEIEASRNAAKLSTTSGRVIGILQPHRFTRVQHFFKDFTSAISKFDYLILTDVYPAGE 402

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +         I  EI       +   +  +AI   +       DV++  G G
Sbjct: 403 EVISGCESLDIVREIKSRGFDQVVHASTPDAITDIVASVAQPGDVVIAMGAG 454


>gi|120404494|ref|YP_954323.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
 gi|189029002|sp|A1TAW7|MURC_MYCVP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119957312|gb|ABM14317.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 478

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 145/444 (32%), Gaps = 72/444 (16%)

Query: 56  GHLFIPQAI---AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           GH   P A+   A G  A+V + A         I    P LV    R    L    +  +
Sbjct: 65  GHD--PSALDMLAGGPTAVVTTHA--------AIPKTNPELVEARRRGIPVLLRPAVLAR 114

Query: 113 HPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  L VTGT GK++  S +    Q SG           +     +    + S    
Sbjct: 115 LMAGHTTLMVTGTHGKTTTTSMLIVALQHSGFDPSFA-VGGDLGEAGTNAHHGSGSSF-- 171

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                            + S   L ++R           TN+  DH+D+  + +AY    
Sbjct: 172 -------------VAEADESDGSLLEYR-----PDIVVVTNIEADHLDFFGSVEAYTEVF 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ 289
            R F   +      ++  DD  ++ + +R   +G RVL  G  G   +    +       
Sbjct: 214 DR-FAGRIDPGGALVVCVDDPGARALAERLSGSGLRVLRYGSTGTGALDATLLEWTQQGT 272

Query: 290 Q----VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                + +  E +       +PG     NAL A       G D   VL+ L     V  R
Sbjct: 273 GAVASIALRTEARPLTMRLSVPGRHMALNALGALLAAREAGADLESVLDGLAGFEGVRRR 332

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPI 401
           FE VG ++ G R++ DYAH    +   L  +R +      GR IVVF             
Sbjct: 333 FELVG-SANGVRVFDDYAHHPTEVRATLTALRAVVDQAGSGRAIVVFQPHLYSRTVTFAS 391

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML----- 456
               AL  AD   V D     E P       + G+ G        +A+   +  L     
Sbjct: 392 EFGAALSAADEVFVLDVYAAREQP-------LAGVSGATV----ADAVSAPVTYLPDFSA 440

Query: 457 ---------NKQDVLVVAGKGHET 471
                       DV+V  G G  T
Sbjct: 441 VAARVAASVAPGDVVVTMGAGDVT 464


>gi|253581419|ref|ZP_04858645.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium varium ATCC
           27725]
 gi|251836783|gb|EES65317.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium varium ATCC
           27725]
          Length = 452

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 124/363 (34%), Gaps = 35/363 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + ++ SSA    +          I +V        L        + E  +AV GT G
Sbjct: 60  KGCDMVIASSAIKYDNPEYKYAVENGIKIVKRGELLAMLL-------NDETGIAVAGTHG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +             S+L        
Sbjct: 113 KTTTSSMMSSVMLNLDPTIVVGGILPEIGSNAKPGKSEYFVAEADESDNSFL-------- 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +K      TN+  DH+D H   +    +  +  ++   +    +
Sbjct: 165 ---------------YMKPSYAVITNIEEDHLDTHGCLENINKSFSQFIDQTKNE---VV 206

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           +  D    K+++++         S+  +   I    +   + K    ++++GKD   +  
Sbjct: 207 VCIDCENLKKLVEKKEKEKIVTYSINDKEADIFAYDINVENGKTSYNVAIKGKDVGRYTI 266

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYA 363
            +PG   + N+L         G+D   + + LE       R++ +  N  +G +I  DYA
Sbjct: 267 SIPGHHNILNSLPVIYYAKKFGVDEEFLKKALENFKGSKRRYDVLYCNEDKGIKIIDDYA 326

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    +   L+  ++I   ++ ++F                 A + A+  ++       E
Sbjct: 327 HHPTEIRATLQGAKSIEHEKLTIIFQPHRYSRVKFLLQNFTDAFEGAEEVLILPIYSAGE 386

Query: 424 DPE 426
             E
Sbjct: 387 KDE 389


>gi|34540390|ref|NP_904869.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas gingivalis
           W83]
 gi|37538308|sp|Q51831|MURC_PORGI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|34396703|gb|AAQ65768.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas gingivalis W83]
          Length = 456

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 132/410 (32%), Gaps = 50/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV + A        T   +    VV    + L            E  L V GT GK++ +
Sbjct: 70  IVYTPAVPADHSELTYFRSNGYRVVKRA-EVLGEI------TLMERALCVAGTHGKTTTS 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  + ++S      +   + +   + + +             + L S     V VEA 
Sbjct: 123 TLLAHLLKQS-----HVDCNAFLGGISNNYQS------------NLLLSDKSDLVVVEAD 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H    +K      T+   DH+D + T + Y ++    F  L+      ++    
Sbjct: 166 EFDRSFH---HLKPFMAIITSADPDHMDIYGTAENYRDS-FEHFTSLIQSGGALVLKYGA 221

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
             +  +     +      S   Q        +     +   T    G   +     +P  
Sbjct: 222 PVNPRL---GSDVSLFTYSSDDQQADYFASDIMIRDGRLFFTWHYPGGQLEGVELGVPVR 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NA+ A  +    G+    +   +        RFE V    R   +  DYAH    L
Sbjct: 279 INVENAVAAMAIAHLNGVTVEELRSGIASFKGSHRRFEKVLDTER-VVLIDDYAHHPVEL 337

Query: 370 EMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           +  + ++R I SG+ I+ +F                 +L + D  ++ D  P  E P   
Sbjct: 338 DAAIHSVREIYSGKHIMGIFQPHLYSRTADFYQDFARSLSMLDEVVLLDIYPARELPLPG 397

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKGH 469
                I   I +     + K +        ++ L+     DV+++ G G 
Sbjct: 398 VTSRLILDLIENPNKTLVSKND-------LLDYLHGNEIPDVVLILGAGD 440


>gi|297191289|ref|ZP_06908687.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718424|gb|EDY62332.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 464

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 152/431 (35%), Gaps = 42/431 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    + +A  A ++VVSSA    +      +   + VV  +   L+   + L
Sbjct: 54  GVTVHIGH--AAEHLADDATSVVVSSAIRADNPELVRAAELSVPVVHRS-DALASLMTGL 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                   +AV GT GK++  S +       G                 D        + 
Sbjct: 111 ------RSIAVAGTHGKTTTTSMLAVALTELG----------------LDPSYAIGGDLD 148

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                +      +     + S     ++             N+  DH   + +    + +
Sbjct: 149 GPGTNARHGDGDIFVAEADESDRSFQKY-----DPEVAIVLNVELDHHANYASMDEIYES 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVGY-QGKFIHLKKVCAIHN 287
               F   +      +I AD A + E+  +  + +  ++++ G  +   + + K+     
Sbjct: 204 -FETFAGKIVPGGTLVISADQAGAVELTAKVRDRSSVKIVTYGESEAADVRVHKITPRGL 262

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +VT+ ++G+   F   +PG     NA+ A    +A+GI +  +   +     V  R +
Sbjct: 263 TSEVTVLLDGRLLTFTVSVPGRHYALNAVAALAAGVALGIPAHNLASAIGAYTGVKRRLQ 322

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIA 406
             G  + G ++   YAH    +   L+ +R   +G R++VVF         +       A
Sbjct: 323 LKGEAA-GVQVIDSYAHHPTEMTADLEAMRGAAAGSRLLVVFQPHLFSRTQELGTEMGQA 381

Query: 407 LDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQD 460
           L LAD ++V D  P  EDP       +  +        +   +   A+   +  M    D
Sbjct: 382 LALADASVVLDIYPAREDPIPGITSGLITDAARAAGADVTAVSDKAAVPEVVAGMAKPGD 441

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 442 LVLTMGAGDVT 452


>gi|251782916|ref|YP_002997219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391546|dbj|BAH82005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 456

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 150/428 (35%), Gaps = 63/428 (14%)

Query: 55  DGHLF----IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS---- 103
           DG  F      QA+  +G + +  S    L D         P +  DN    + L     
Sbjct: 43  DGKPFEENPAAQALLEEGIKVVCGSHPLELLDEDFEYMVKNPGIPYDNPMVTRALEKQIP 102

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       I+ +TG++GK++  + +  +    G S+   G          
Sbjct: 103 VLTEVELAYLVSESP---IVGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------- 152

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                 P+   + KA +         + +E SS  L    +D  K      TNL   H+D
Sbjct: 153 -----YPASEVVQKASAN------DTLVMELSSFQLM--GVDAFKPHIAVITNLMPTHLD 199

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK R+  E+   +   I+ A+   S  + K          +         
Sbjct: 200 YHGSFEDYVAAKWRIQAEMT-ADDYLILNANQEISAALAKTTKATVIPFST--------- 249

Query: 279 LKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            ++V      +   +  +G          +PG   + NAL A  +    GI   +++E L
Sbjct: 250 -QEVVDGAYLEDGMLYFKGHPIMPAANLGVPGSHNIENALAAIAVAKLSGIADDVIVEVL 308

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                V  R + VG   +    Y D   T+  +    K +    + ++I++   G DR  
Sbjct: 309 SHFGGVKHRLQLVG-KIKDITFYNDSKSTN--ILATQKALSGFDNKKLILI-AGGLDRGN 364

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++  +   L  + I+ +   R     K  AE+ +    ++E  +   A   A +  
Sbjct: 365 EFDDLVPDLRG-LKQMIILGESAER----MKRAAEMAN--VPYLEAADVAAATELAFQEA 417

Query: 457 NKQDVLVV 464
              D +++
Sbjct: 418 QAGDTILL 425


>gi|99035085|ref|ZP_01314874.1| hypothetical protein Wendoof_01000291 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 507

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 143/423 (33%), Gaps = 51/423 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +       N              + A  + GK+   ++AV+G+SGK+
Sbjct: 95  AQIVVHSSAIESDNVELIAAKNNN----KTVLHRSDILAEIMKGKY---VIAVSGSSGKT 147

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   SG     I  T T+       +        L  + ++L     +  ++
Sbjct: 148 TTTAMIASIFDHSG-----IDATVTVGGILNSYKSNFK----LGGSDTFLIEADESDGTM 198

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         I       T++  DHIDY+ T     NA  +          P  + 
Sbjct: 199 L------------KIPAKIAVITSINNDHIDYYGTFDNIKNAFSQFVNNAGSAVLPDSVD 246

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG---------------KFIHLKKVCAIHNKQQVT 292
            D      +     N   R  ++                   +    K  C   + Q VT
Sbjct: 247 IDYDAGNSITFGFENGSIRASNIKQHANSIEFDVLNNWIPALRAGMTKGKCTEMSSQCVT 306

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +         L    G  +V NAL A  + I +GI  A + + L +   V  RF  +  +
Sbjct: 307 LGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARRFSLIA-D 365

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +G ++  DYAH  N +   L   R+IT G++I +                     + D 
Sbjct: 366 IKGVKLIEDYAHHPNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRIFMMFDY 425

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVA 465
            I+T  +P  + P      + I+  +I       +  N    I   I    +  D+++  
Sbjct: 426 VILTPVHPPEDKPIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSDIVLFI 485

Query: 466 GKG 468
           G G
Sbjct: 486 GAG 488


>gi|160896918|ref|YP_001562500.1| UDP-N-acetylmuramate--L-alanine ligase [Delftia acidovorans SPH-1]
 gi|229486487|sp|A9BUK7|MURC_DELAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160362502|gb|ABX34115.1| UDP-N-acetylmuramate--alanine ligase [Delftia acidovorans SPH-1]
          Length = 477

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 142/432 (32%), Gaps = 55/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA+A+V S+A    +          I VV      L+       G    
Sbjct: 56  GH---AAAHIEGADAVVTSTAVQSDNPEVLAARERKIPVVPRALM-LAELMRFKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ G  GK++  S V  +   +GL      PT  I                L  A +
Sbjct: 108 --IAIAGAHGKTTTTSLVTSVLAEAGLD-----PTFVIGGK-------------LNSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA     D   L+ +  +    TN+  DH++ +             F 
Sbjct: 148 NAKLGQGDYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFGRLKGAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
             +P    AI+  D    +E++ +       V + G+          V A       T+ 
Sbjct: 205 HRMPFYGRAIVCVDSPAVREILPQVARP---VTTYGFAEDAQVRALNVRAEAGSMHFTVR 261

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D D +  LPGE  V NAL A  + + + I    +L   E    V  RF+  G
Sbjct: 262 RSNGQSYPDLDVVLSLPGEHNVLNALSAVAVAMELEISDDALLRAFESFKGVGRRFQRYG 321

Query: 351 T----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKI 405
                +     +  DY H    +   L   R    GR +V+ F                 
Sbjct: 322 ELAAADGGSFTVIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVK 381

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR--------TAIE-ML 456
            + LAD  ++T+     E P  + A     +   +    R+E +          AI    
Sbjct: 382 VIGLADAVLLTEVYAAGEAP--VVAADGRSLARALRVAGRVEPVFVENVAELPAAIAVNA 439

Query: 457 NKQDVLVVAGKG 468
              DVL+  G G
Sbjct: 440 RDGDVLLCMGAG 451


>gi|302541868|ref|ZP_07294210.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459486|gb|EFL22579.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 485

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 95/436 (21%), Positives = 152/436 (34%), Gaps = 48/436 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A ++VVSSA    +          I VV  +   L+     +
Sbjct: 56  GATVHLGH--AAGNVASDATSVVVSSAIRADNLELVAARERGIPVVHRS-DALAAL---M 109

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G  P   +AV GT GK++  S +    +  GL    +     I                
Sbjct: 110 DGHRP---IAVAGTHGKTTTTSMLAVSLRTLGLDPSYV-----IGG-------------D 148

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L    S     G      EA       H+            N+  DH   + +    +++
Sbjct: 149 LDAPGSSAEHGGGEIFVAEADESDRSFHKYA---PEVAIILNVELDHHANYASMDEIYDS 205

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHN 287
             R F E +      +I AD   ++E+  + A   G RVL+ G      + +  V     
Sbjct: 206 -FRTFVERVRPGGTLVISADHDGARELTAQLAGREGLRVLTYGEAADADVRVLDVVPHGL 264

Query: 288 KQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +VT+       G +  F   +PG    +NA+ A     A+ + +  +   +     V 
Sbjct: 265 TSEVTVRFAEALGGGEITFTVSVPGRHYAHNAVAALAAGAALDVPARDLAPAIASYTGVK 324

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIM 402
            R +  GT +   ++   YAH    +   L+ IR     GR++VVF         +    
Sbjct: 325 RRLQLKGTAAE-VQVIDSYAHHPTEIAADLEAIRGGAGEGRVLVVFQPHLFSRTQELGAE 383

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-M 455
              AL LAD ++V D  P  EDP      + +     H         +R  AI   I  M
Sbjct: 384 MGEALALADASVVLDIYPAREDPVPGITSDLVIDAARHHGADVTAAHDRS-AIPGLIAGM 442

Query: 456 LNKQDVLVVAGKGHET 471
               D+++  G G  T
Sbjct: 443 AKPGDLVLTMGAGDVT 458


>gi|88811837|ref|ZP_01127090.1| UDP-N-acetylmuramate--alanine ligase [Nitrococcus mobilis Nb-231]
 gi|88790721|gb|EAR21835.1| UDP-N-acetylmuramate--alanine ligase [Nitrococcus mobilis Nb-231]
          Length = 482

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 138/412 (33%), Gaps = 44/412 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V SSA    +          I VV    + L+      YG      +AV GT GK++ 
Sbjct: 82  AVVTSSAVGPDNSEVVAARQHRIPVVPRA-EMLAELMRFRYG------VAVAGTHGKTTT 134

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  +    GL      PT  I                        +  G  H  V  
Sbjct: 135 TSLIASLLAEDGLD-----PTFVIGGRLNSVASH--------------ARLGAGHYLVAE 175

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +           ++ +    TN+  DH+  +Q   A   A    F   LP    A++  D
Sbjct: 176 ADESDASFL--YLQPMIAVVTNIDADHLGAYQGDFARLRASFLEFLHHLPFYGLAVLCID 233

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           D   + ++ R         S GY     +    V     +    + V  +  F     LP
Sbjct: 234 DPEVRALLDRTTRPAR---SYGYSADADVRATAVVQRGLRTSFAVRVGDEAPFSVDLNLP 290

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAH 364
           G     NAL A  + + +G+  A ++  L +   +  RF+  G  + GG    +  DYAH
Sbjct: 291 GRHNALNALAAIAVALELGVSRAAIVRGLAEFAGIDRRFQPCGVLALGGGRVSLVDDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN---- 419
               +  +L+  R    GR IVV F                  L  AD  ++T+      
Sbjct: 351 HPREIAAVLRAAREGWPGRRIVVAFQPHRYSRTRDLFEDFARVLSAADALLLTEVYAAGE 410

Query: 420 --PRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 D   +   I + G    +   +  E I    +++   D+L+  G G
Sbjct: 411 AAIAGADGRSLCRAIRMRGQIDPVFALSVEELIELVPDVVRDDDLLITLGAG 462


>gi|332977769|gb|EGK14529.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp.
           1501(2011)]
          Length = 476

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 152/431 (35%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + IA  A+ IVVSSA      +  A +++  P++   +    L       +G  
Sbjct: 70  GHD--SKNIAN-ADVIVVSSAIDRNNPEIQAALKAQLPVVRRAD---MLGELMRYRHG-- 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV G  GK++  S +  +   +GL      PT  I     +      S       
Sbjct: 122 ----IAVAGAHGKTTTTSLLTMMMTEAGLD-----PTYVIGG-KLNASGKNASLGESRYL 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + ++               +  +A   TN+ +DH++ +        A    
Sbjct: 172 IAEADESDASFLT---------------LHPMAAIVTNIDQDHMETYGNSFDKLKAAYIQ 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVT 292
           F + +P    A++  DD   KE+     + G  VL+ G++    +    V     K   T
Sbjct: 217 FLQNMPFYGLAVVCGDD---KELYSMIDDIGRPVLTYGFEPHNNVQATDVRVEGTKTHFT 273

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--- 348
            +  + +       +PG+  V NAL A  +    G+D   +   L K   V  RFE    
Sbjct: 274 VLRKDHEPLQLTLNIPGQHNVLNALAAITMATDEGVDDEAIKRALAKFAGVGRRFEQQAC 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-L 407
           V  +     +  DY H    +   +K  R     R +V+        + +      +A L
Sbjct: 334 VKKDEGDVLLIDDYGHHPVEVAATIKAARESYPERRLVMLFQPHRYTRTRDCYDDFVAVL 393

Query: 408 DLADIAIVTDDNPRSEDP--EKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNK 458
              D  ++ D     E P        +   I       P  I+K     A++    +L  
Sbjct: 394 SQVDELMLLDVYSAGETPIVGADTKSLARSIRLRGEVEPMVIDKDELAPAMQR---ILKA 450

Query: 459 QDVLVVAGKGH 469
            D+L+  G G+
Sbjct: 451 GDILITQGAGN 461


>gi|330828046|ref|YP_004390998.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
 gi|328803182|gb|AEB48381.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
          Length = 484

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 139/431 (32%), Gaps = 50/431 (11%)

Query: 56  GHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            H+F+  +     GA  +VVS+A    +          I VV    + L+      +G  
Sbjct: 65  AHIFVGHSAEHVEGASVVVVSTAIKQDNPELLAARELRIPVVRRA-EMLAELMRFRHG-- 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  S V  I   +        PT  I                    
Sbjct: 122 ----IAIAGTHGKTTTTSLVASIYAEADRD-----PTFVIGGLLNSAGTNARLGSSRY-L 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +    +   A    
Sbjct: 172 IAEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFSKLKATFIE 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
           F   LP    A++  DD   + ++          L+ G      + +       N     
Sbjct: 217 FLHNLPFYGLAVVCIDDPVIRGMLPEIARP---TLTYGLSDDADVQVLDFVQTTNHSCFR 273

Query: 293 ISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +   E  +      LPG     NA  A  +    G+    ++  L K   V  RF+  G 
Sbjct: 274 VRRKEAGELLVTLNLPGIHNALNAAAAIAVATEDGVSDEAIISALAKFEGVGRRFQQYGE 333

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T      +  DY H  + +++ +   R      R+++VF                  L
Sbjct: 334 FETGRGKAMLVDDYGHHPSEVKVTINAARAGWPEKRLVMVFQPHRYTRTRDLYEDFADVL 393

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNK 458
              D+ ++ +     E+P        +   I       P F+   + + A+    +++ +
Sbjct: 394 SKVDVLVMLEVYAAGEEPIPGADGRALCRSIRSRGNLEPIFVATPDDVPAVLA--DLIGE 451

Query: 459 QDVLVVAGKGH 469
            D+++  G G+
Sbjct: 452 GDLVLTQGAGN 462


>gi|311029926|ref|ZP_07708016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           m3-13]
          Length = 449

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 128/352 (36%), Gaps = 44/352 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++      S    G    +S                    
Sbjct: 112 APIIGITGSNGKTTTTTLIDEMLAADKKSPLIAGNIGNVSV------------------- 152

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ Q      +            D  +     F NL   H+DYH T   Y  AK ++F
Sbjct: 153 -EVAQQATEKDIMVTELSSFQLMGTDIFRPKISVFLNLFEAHLDYHGTLDEYGKAKAKIF 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
                KE  A++ ADDA   +VMK +      ++             K   +  K +  I
Sbjct: 212 FNQT-KEDYAVVNADDA---QVMKLSEGIQPTIVPFSTNKTVDGAYLKDNYVCFKDEKII 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S++         LPG+  + N L A       G+ +  ++E L +   V  R +F+G   
Sbjct: 268 SID------QIVLPGKHNLENILAAVAAVKLSGVSNEAIIEVLTRFSGVKHRLQFIG-ER 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G R Y D   T+  +    K +    +   +V+   G DR      ++  ++       
Sbjct: 321 DGRRFYNDSKATN--ILATQKALSAFENN--VVLLAGGLDRGNEFDDLLPYMSNV---KV 373

Query: 414 IVTDDNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +VT      E  EK+ R     GI       N  +A+  A EM    DV+++
Sbjct: 374 LVT----FGETAEKLMRTASEAGIKQIKHVDNVEKAVPVAYEMSEGGDVILL 421


>gi|260495140|ref|ZP_05815268.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_33]
 gi|260197197|gb|EEW94716.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_33]
          Length = 468

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 143/418 (34%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ ++ S+A    +   +   N  I       K   L A  L     E  +AV GT G
Sbjct: 67  KGSDYVIASTAIKENNPELSYAKNNGI----TLLKRGELLAKLLNR---ETGIAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNARPGKSEY--------FIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    + +   +  AI
Sbjct: 172 FMY---------------PKYSVITNIDADHLDVHGNLDNI---KKSFIKFICHTQKEAI 213

Query: 246 IYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D    ++ + +          S+  +   I+ K +  +  K    + +  +   +F 
Sbjct: 214 ICMDCENLRDAVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFELYINKELIGEFS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---------R 354
             +PGE  + N+L    L +  G+    + E L        R++ +  N          +
Sbjct: 274 LNIPGEHNILNSLPVIYLALKFGVSKGEIQETLHNFKGSKRRYDVLFDNDLENGYGNKTK 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I++I   R++V+F               K A    D  I
Sbjct: 334 RVRIIDDYAHHPTEIKATLKAIKSIDKSRLVVIFQPHRYSRVHFLLDEFKDAFKDVDKVI 393

Query: 415 VTDDNPRSEDPE-KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +       E  E  I +EI+  H     +E  N  + ++  +  + K    +  G G 
Sbjct: 394 LLPIYAAGEKNEFNISSEILKEHINHNNVENMNEWKDVKRYVSRVKKDSTYIFMGAGD 451


>gi|152980186|ref|YP_001354704.1| UDP-N-acetylmuramate--L-alanine ligase [Janthinobacterium sp.
           Marseille]
 gi|166224696|sp|A6T2F7|MURC_JANMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151280263|gb|ABR88673.1| UDP-N-acetylmuramate--alanine ligase [Janthinobacterium sp.
           Marseille]
          Length = 465

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 139/434 (32%), Gaps = 57/434 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I + A+AIV S+A    +          I +V      L+       G    
Sbjct: 56  GH--AAENIEK-ADAIVTSTAVKEDNPEVIAAREKHIPIVPRAVM-LAELMRLRRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +    GL    +     ++S   + +L T         ++
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEGGLDPTFV-IGGLLNSAGANAKLGTGE-----FIVA 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + ++               +  +    TN+  DH++ +             F 
Sbjct: 160 EADESDASFLN---------------LSPVIEVITNIDADHMETYGHDFEKLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTIS 294
           + LP    A++  DDA  +E+M R       + + G+            AI      T+ 
Sbjct: 205 QRLPFYGVAVLCIDDATVREIMPRISKL---ITTYGFHEDAQVRAIDAKAIDGHMHFTVL 261

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            EG          PG   V NA  A  +   +G+      + L + + V  RF   G  S
Sbjct: 262 QEGYAPMQVSLNQPGMHNVQNACAAIAIARELGVADHATQKALTEFNGVGRRFTRYGEIS 321

Query: 354 RGGR---------IYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMG 403
                        +  DY H        +   R    GR +V+ F               
Sbjct: 322 LPAVNDKPAGTFALVDDYGHHPVETAATIAAARGAYPGRRLVLAFQPHRYTRTRDLFEDF 381

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIE 454
              L   D+ ++ +     E P  I A     +   +    +++ +          T + 
Sbjct: 382 VKVLSTTDMLVLAEVYAAGEQP--IVAADGRTLAHALRVAGKVDPVFVEKIADMPATIMN 439

Query: 455 MLNKQDVLVVAGKG 468
           ++   DV++  G G
Sbjct: 440 IIKDGDVVITMGAG 453


>gi|294632042|ref|ZP_06710602.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
 gi|292835375|gb|EFF93724.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
          Length = 463

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 90/431 (20%), Positives = 147/431 (34%), Gaps = 42/431 (9%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G     GH    + +A  A  +VVSSA    +      +   I VV  +   L+   + 
Sbjct: 53  QGATVHIGH--AAEHLADDASCVVVSSAIRQDNPELVRAAELGIPVVHRS-DALAALMAG 109

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L        +AV GT GK++  S +       GL+           S+A    L  P   
Sbjct: 110 L------RPIAVAGTHGKTTTTSMLAVSLTALGLNP----------SYAIGGDLDAPGSN 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                 + S H                  N+  DH   + +    + 
Sbjct: 154 ALHGTGEIFV---AEADESDRSFHKY--------APEVAIVLNVELDHHANYASMDEIYE 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHN 287
           +    F   +      +I AD   ++E+ +R   +  R ++ G      + +  V     
Sbjct: 203 S-FETFAGKIVPGGTLVISADHDGARELTRRLAGS-VRTVTYGESADADVRVLSVVPQGL 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +VT+ ++G +  F   +PG    +NA+ A    +A+GI +A +   L     V  R +
Sbjct: 261 KSEVTVLLDGAELTFAVSVPGRHYAHNAVAALAAGVALGIPAAELAPALAAYAGVKRRLQ 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIA 406
             G  + G ++   YAH    +   L+ +R       I VVF         +       A
Sbjct: 321 LKGEAA-GVQVIDSYAHHPTEMSADLEAMRAAAGDARILVVFQPHLFSRTQELGKEMGQA 379

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD + V D  P  EDP      E I               ++ E       M    D
Sbjct: 380 LTLADASAVLDIYPAREDPVPGVTSELIIEAARAAGADVTAVHDKAEVPDVVAGMAKAGD 439

Query: 461 VLVVAGKGHET 471
           +++  G G  T
Sbjct: 440 LVLTMGAGDVT 450


>gi|126729249|ref|ZP_01745063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
 gi|126710239|gb|EBA09291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
          Length = 466

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 141/394 (35%), Gaps = 44/394 (11%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A     + P  ++AVTG++GKS+ ++ +  I   S  SS   G                 
Sbjct: 110 ADFDRFERPPRVVAVTGSNGKSTTSALIHHILTASVRSSQLAGNIG-------------- 155

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   L     +    V +E SS+  +  R   +      FTNL  DH+D H     
Sbjct: 156 -----RGVLDIDPPEDGGVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGLGG 208

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVM-----KRAHNAGCRVLSVGYQGKFIHLK 280
           YF AK RLF E  P      +  D+   + +       RA +   RV +    G    + 
Sbjct: 209 YFAAKRRLFAEGGPDRCVIGV--DEVEGQFLAGQMAEGRADDRVIRVATHKLTGPGWMVF 266

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                 ++ +    +   D   +  LPG     NA  A   C ++G+    +   L    
Sbjct: 267 ARKGFLSEWRKGRQIASVDLRDVAGLPGAHNHQNACAAWAACRSLGLGPREIEAGLRSFA 326

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R + +    +GG I+V+ +  +N ++  LK +      R +     G  ++ G   
Sbjct: 327 GLPHRSQRIAE--QGGVIFVNDSKATN-VDSALKALLAFDRIRWVC---GGLMKEGGLAA 380

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +        I         +PE    ++  G       G   +A+  A E     D
Sbjct: 381 LEPGLNHVAKAYVI-------GREPEGFALQL--GGVEAELCGTMDQAVARAAEDAQPGD 431

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           V+++A     +     N EK+       ++++L 
Sbjct: 432 VVLLA-PAAASFDQYDNFEKRGEDFVANVQKVLA 464


>gi|303235636|ref|ZP_07322243.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
 gi|302484083|gb|EFL47071.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
          Length = 453

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 132/363 (36%), Gaps = 42/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G   + +G    I          
Sbjct: 104 EFAGRYTN---SKMVCITGSNGKTTTTSLIYHIFKNAG---YDVGLAGNIG--------- 148

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++ +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 149 -------KSLALQIAEEPHEYYVIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDFQ 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y +AKMR+ +    ++S      D    KE+ K    A     S   +   I   + 
Sbjct: 200 FEKYADAKMRIIQNQTKEDSFIYWNDDPVIKKELEKFDVKAVQYPFSELKEKGSIGYIEE 259

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +     ++E +D      L G+  +YN+L A       GI    + + L     V
Sbjct: 260 GQYILETPTPFNMEQED----LSLTGKHNIYNSLAAGLASNISGITKENIRKSLSDFPGV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V   +    I    A   ++    L+++RT T     ++   G D+     PI 
Sbjct: 316 EHRLEKVCKVAGVQYINDSKATNVDACWYALESMRTPT-----ILIIGGKDKGNDYTPIK 370

Query: 403 GKIALDLADIAIVTDDNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             +      +  +  DN +  E+ +++      GIP   +  +  E +    EM    D 
Sbjct: 371 ELVKEKCVGLVYLGADNKKLHENFDEL------GIP-VRDTHSMKECMDACYEMAKSGDT 423

Query: 462 LVV 464
           +++
Sbjct: 424 VLL 426


>gi|170076738|ref|YP_001733376.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. PCC 7002]
 gi|169884407|gb|ACA98120.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7002]
          Length = 488

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 125/410 (30%), Gaps = 66/410 (16%)

Query: 62  QAIAQ--GAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            AI Q  G   ++ S+A   +  +F A       I    +    L   A         + 
Sbjct: 73  DAIEQHNGLPQVICSTAIGQENPEFQAAQSLGCHIFHRSDVLSAL--VAEY-------DS 123

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S +  I   +G     + PT  +                    L   
Sbjct: 124 VAVGGTHGKTTTSSLIGYIFLVAG-----VDPTIIVGGEV--------DAWDGNARL--- 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG   V+    S G     L  ++   G  TN+  DH D++Q+          +F+  
Sbjct: 168 -GQGNYLVAEADESDG----TLVKLRPQLGVVTNIELDHPDHYQSLDQVV----EIFQTF 218

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTIS 294
             +    I   D          A       +  G Q           +       Q TI 
Sbjct: 219 AQQCDRLIACVDCPTI------ATGVVPYQVGYGLQNLEQADYWATDIHYGATSTQATIW 272

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G    +    L G   + NAL A       G+    + E L        RFE  G   
Sbjct: 273 ERGDRLGEINLALLGAHNLSNALGAIAAARCCGVPFEPIAEALASFQGAKRRFEIRG-QY 331

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLAD 411
           +G  +  DYAH  + +E+ L+  R        VV  F                 A   AD
Sbjct: 332 QGITLIDDYAHHPSEIEVTLQAARLRAGQGRRVVAIFQPHRYSRTQAFFDEFAKAFKNAD 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           + I+TD     E            +          EA++ AI      DV
Sbjct: 392 VTIITDIYSAGE----------KNVDNLT-----GEALQQAIAHQQDGDV 426


>gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
 gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
          Length = 445

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 163/420 (38%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   + L  +G       +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 148 ----PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F      +   ++ ADD +   + +       +  S+ ++  F   ++   
Sbjct: 202 DYAHTKDKIFRG----DGVQVLNADDVFCHAMKRAGRE--VKWFSLEHKADFWLERETGR 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P 
Sbjct: 256 LKQGNEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   
Sbjct: 310 RVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A     + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 365 LAGKAKGVFLIGVDAP------QIRRDLDGCDLNMTDCATLEEAVQTAYAQAEVGDIVLL 418


>gi|54310302|ref|YP_131322.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           SS9]
 gi|59798288|sp|Q6LMF7|MURC_PHOPR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46914743|emb|CAG21520.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
          Length = 487

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 133/415 (32%), Gaps = 40/415 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  +VVS+A +  +          I VV    + L+      +G      +A+ GT G
Sbjct: 81  NGASVVVVSTAIAQDNPELVAARELRIPVVRRA-EMLAELMRYRHG------IAIAGTHG 133

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + + QI   +GL    +      S+        +         ++       + +
Sbjct: 134 KTTTTALMTQIYFEAGLDPTFVNGGLVKSAGTNARLGCS------RYLIAEADESDASFL 187

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +             F   LP    A+
Sbjct: 188 ---------------HLQPMVSVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAV 232

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++ R                   ++     H      +     D +    
Sbjct: 233 MCVDDPVVRELLPRI-GRQIITYGFSDDADVRIVEYGQHAHQGHFTILRAGKPDLNVKLN 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDY 362
           +PG+    NA  A  +    G+D   ++  L +      RF+ +G   T +    +  DY
Sbjct: 292 IPGKHNALNATAAVAVATEEGVDDDAIIRALLEFEGTGRRFDHLGEFETGNGSVMLVDDY 351

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H  + +++ ++  R      R++++F                  L+  D+ ++ D    
Sbjct: 352 GHHPSEVDVTIQAARAGWEKKRLVMIFQPHRYSRTRDLYEDFAHVLEQVDVLLMLDVYSA 411

Query: 422 SE------DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E      D   +   I   G    I      +       +L   D+L+  G G 
Sbjct: 412 GEVAIPGADGRSLCRTIRGRGKIDPIFVPTHEDLPSVLANILQNDDLLLTQGAGD 466


>gi|297587603|ref|ZP_06946247.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
 gi|297574292|gb|EFH93012.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
          Length = 461

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 134/407 (32%), Gaps = 43/407 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV + A    +          + VV     FL               + V+G+ GKS+  
Sbjct: 74  IVYTDAILDDNEELIAARELGVDVVSRG-VFLGALMRNYKYS-----IGVSGSHGKSTTT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + +I   + +    +          Q N     S   L +A  Y ++    + S+   
Sbjct: 128 SMIAKILIDAKVDPSIL--LGGKLDEIQGNVHCGNSEYMLTEACEYKANILNYYPSM--- 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                               N+  DH+DY++         +   + L  + S AII  DD
Sbjct: 183 ----------------AIILNIDEDHLDYYKDLNHIVATFIGYMKNL-EENSKAIINIDD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQ-QVTISVE--GKDFDFLFP 305
              + ++         +++ G +      ++  +    N      IS E   KD +F   
Sbjct: 226 KNCEPLLSHIKG---EIITFGIENEKADYNIHDITFNENGNPTFVISSEKFDKDEEFSLS 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G   +Y+A+ A   C    ID   + +++++   +  R E VG   +G  +  DY H 
Sbjct: 283 IIGRHNIYDAVAAIIACYEFHIDIDTIRKNMKEYQNLHRRMETVGF-YKGCEVKTDYGHH 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              ++  LK +     G+   VF                 A    D  IVT+     E  
Sbjct: 342 PTEIKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDDFANAFYDCDEVIVTEIYAAREKF 401

Query: 426 E------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +       +  +++             EA       ++  D+++  G
Sbjct: 402 DSSIHSTDLVEKLVKNGVNAKYYKTFEEARDYLRSKVSDNDIVLTTG 448


>gi|262280495|ref|ZP_06058279.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|299768392|ref|YP_003730418.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
 gi|262258273|gb|EEY77007.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|298698480|gb|ADI89045.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
          Length = 482

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 148/432 (34%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I   A  +VVS+A   ++    A I   TPI+      + L       +G  
Sbjct: 73  GHQ--AENIKN-ANVLVVSTAIDPENPEIKAAIEQRTPIV---RRAEMLGELMRYRHG-- 124

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S +  +          + PT  I                +  A
Sbjct: 125 ----IAVAGTHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L             +AS           ++ +A   TN+  DH+D ++            
Sbjct: 168 LGESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQ 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    A++  DDA  +E+M R       V++ G+ +   I    V     +   T
Sbjct: 220 FLHNLPFYGLAVVCGDDANIREIMPRVGRP---VITYGFNEDNDIRAIDVEQDGMRSHFT 276

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G++        PG   + NAL A G+    G+    +   L     V  RF+  G 
Sbjct: 277 VLRKGREPLRLTINQPGMHNILNALAAIGVATDEGVSDDAISRALAGFSGVGRRFQVQGE 336

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                   ++  DY H    +E  +K  R +    R++++F                  L
Sbjct: 337 FELADGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVL 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEM-LN 457
              D  ++ +  P  E P  I       +   I    ++E I         +  ++  L 
Sbjct: 397 SQVDQLLLLEVYPAGEKP--IVGADSRTLARSIRLRGQVEPILVDPVEGNLQNIMQNVLQ 454

Query: 458 KQDVLVVAGKGH 469
             D+L+  G G+
Sbjct: 455 PNDLLLTQGAGN 466


>gi|283768730|ref|ZP_06341641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
 gi|283104516|gb|EFC05889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
          Length = 523

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 132/378 (34%), Gaps = 54/378 (14%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQI-------CQRSGLSSFQIGPTSTISSFAQD 159
            RLY +     + +TG+ GK+S  + +Q I              +  +G T TI ++ + 
Sbjct: 170 KRLYAQRDLIKIGITGSYGKTSTKNIIQSIVREEYHSLMTPASYNTPMGITMTIRNYLKP 229

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                                 V    + A   G     +  ++   G  T++G  H+  
Sbjct: 230 IHQ-------------------VFVCEMGADHVGEITRLMKYVQPQIGVVTSVGPQHLLT 270

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--I 277
             + +   + KM++ E L PK+   +I  D+ Y   + +        ++S G Q +    
Sbjct: 271 FGSLENIIHEKMQMIERL-PKDGLGVINLDNDY---IRQYRVKNSVPLISFGIQSEDVDY 326

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              K+         T+    ++  F   L GE  + N L    +   +GI    +   + 
Sbjct: 327 RAVKISYTTTGSYFTVVHAKEEVAFHTKLLGELNIMNILSGIVVARHLGISWKSLQRAVA 386

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGD 393
            +  V  R E    N    R   D +       +M L+ +  +   R I+   +   G  
Sbjct: 387 NMEQVEHRLELKKINGH--RFIDDAFNANPIGAKMALEVLSMMPGKRYIITPGMIDLGKK 444

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI------- 446
           +D+  R   GK      D  I+         P++ +A I  G+       + I       
Sbjct: 445 QDEYNR-EFGKRMKHFVDEVILVG-------PKQTKA-IQEGLAEMNFDADHIHVYQTVQ 495

Query: 447 EAIRTAIEMLNKQDVLVV 464
           EA+    E  ++ D +++
Sbjct: 496 EALAYVYEHADEHDTILL 513


>gi|89055254|ref|YP_510705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Jannaschia
           sp. CCS1]
 gi|118595660|sp|Q28NN2|MURD_JANSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|88864803|gb|ABD55680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Jannaschia sp.
           CCS1]
          Length = 460

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 133/410 (32%), Gaps = 49/410 (11%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAV 120
           G   +V S      YS    +        + V ++   F        +  H  P  ++AV
Sbjct: 61  GVACLVTSPGIPHLYSTPHRAIVAAYAAGVPVDNDIGLFFRSLGQGDWAFHDTPPRVVAV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  I + +G      G    I     D                     
Sbjct: 121 TGSNGKSTTSALIAHILEEAGTPVQLAG---NIGRGVLDIEPPIDG-------------- 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E SS+  +  R   +      FTNL  DH++ H     YF AK RLF E  P+
Sbjct: 164 --EVIVIELSSYQTELAR--ALTPDIAVFTNLSADHLERHGGMGGYFAAKRRLFSEGGPE 219

Query: 241 ESPAIIYADDAYSKEVMKRA-----HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +   +  D+   + +  +           RV S    G    +       ++ +     
Sbjct: 220 RAVIGV--DEIEGQYLAGQLVEGPEDGRLIRVSSGKLSGPGWDVSTRKGWLSEFRKGRQA 277

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D   +  LPG     NA  A G+C A+G+   ++         +P R + V   +  
Sbjct: 278 ASIDLRGVPGLPGAHNHQNAACAYGVCRALGLAPRVIEAAFATFEGLPHRSQRVAEINGV 337

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +    A   ++    L   + I     I     G ++D G   +            I 
Sbjct: 338 FYVNDSKATNVDAATKALGAFKRIR---WIC---GGLEKDGGLEALWEAAGHVAKAYVIG 391

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +    +     I  ++          G+   A+  A       D +++A
Sbjct: 392 REAEAFALHLGDIPKDVC---------GDMATAVARASADAQPGDTVLLA 432


>gi|22536654|ref|NP_687505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae 2603V/R]
 gi|76787986|ref|YP_329209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae A909]
 gi|76798291|ref|ZP_00780538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77405595|ref|ZP_00782685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
 gi|77411435|ref|ZP_00787781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|30316025|sp|Q8E186|MURD_STRA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063264|sp|Q3K2P4|MURD_STRA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22533493|gb|AAM99377.1|AE014213_16 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 2603V/R]
 gi|76563043|gb|ABA45627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae A909]
 gi|76586363|gb|EAO62874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77162521|gb|EAO73486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|77175817|gb|EAO78596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
          Length = 451

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 140/426 (32%), Gaps = 59/426 (13%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---- 103
           DG  F         + +G + +  S    L D         P +  +N   +K L     
Sbjct: 39  DGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVKKALEKQIP 98

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       ++ +TG++GK++  + + ++    G      G    I   A 
Sbjct: 99  VLTEVELAYLVSE---SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG---NIGFPAS 152

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +          L   LS     GV                    +      TNL   H+D
Sbjct: 153 EVVQAANDKDTLVMELSSFQLMGVKEF-----------------RPHIAVITNLMPTHLD 195

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK  + +  +      ++  +   SKE+ K          S   +    +
Sbjct: 196 YHGSFEDYVAAKWNI-QNQMSSSDFLVLNFNQGISKELAKTTKATIVP-FSTTEKVDGAY 253

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++     +  + + +SV+         +PG   V NAL    +    GI + ++ E L  
Sbjct: 254 VQDKQLFYKGENI-MSVDD------IGVPGSHNVENALATIAVAKLAGISNQVIRETLSN 306

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R + +G    G   Y D   T+  +    K +        +++   G DR    
Sbjct: 307 FGGVKHRLQSLG-KVHGISFYNDSKSTN--ILATQKALSGF-DNTKVILIAGGLDRGNEF 362

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             ++  I      + +        E   +++         + +  +  +A+  A E+  +
Sbjct: 363 DELIPDITGLKHMVVL-------GESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQ 415

Query: 459 QDVLVV 464
            DV+++
Sbjct: 416 GDVILL 421


>gi|241518511|ref|YP_002979139.1| cyanophycin synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240862924|gb|ACS60588.1| cyanophycin synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 910

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 126/366 (34%), Gaps = 38/366 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I    G     +G TS+   +    R+          A   L    +    +E + 
Sbjct: 512 MLAHILAADGQ---IVGMTSSNGVYIDGRRIMEGDCTGPRSARVVLGEPTIDVAVLETAR 568

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      + +     K  + E  + ++  +I+ AD
Sbjct: 569 GGLLREGLAFNACDIGCVTNVTADHLGLRGVHSVEDLAAVKSVVVEA-VHEDGWSILNAD 627

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---- 305
           D     + + A    C   S     ++    K    H  + +   +    FD +      
Sbjct: 628 DPLVAAMREEAGGHICY-FSTKAPKQWPDFLKDHVFHGGRALGCDLATGLFDMILYDKAQ 686

Query: 306 ---------------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEF 348
                              F V NAL A+ + +  G+   ++ E L        +     
Sbjct: 687 KMLICRVDEIPATMNGMAAFNVENALAASAMAVCNGVPLPVIREALRSFGTSYEQSAGRL 746

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIA 406
                 G RI VDYAH    L  + + +  + +G    I V G GGDR       MG+IA
Sbjct: 747 NMVEREGVRIIVDYAHNPGGLRALGRLVGKLRTGNSSCIGVVGIGGDRRDQDIYEMGEIA 806

Query: 407 LDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGF------IEKGNRI-EAIRTAIEMLNK 458
             + D  I+ +D + R     ++ A +  G          +E   R  EA+  A+     
Sbjct: 807 ASVFDRLILKEDYDLRGRSAGEVVAILRQGALKAGFDASKLEVVLREHEAVERALGSALN 866

Query: 459 QDVLVV 464
            D++VV
Sbjct: 867 DDLIVV 872


>gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
 gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
          Length = 445

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 161/418 (38%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A++ G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP------------- 148

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              + +A      +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 149 ---VLEAEWQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F      +   ++ ADD + + + +       +  S+ ++  F   ++   + 
Sbjct: 204 AHTKDKIFRG----DGVQVLNADDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGRLK 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 258 QGDEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G   + G +++D +  +N    +            + V   G  + Q   P+   + 
Sbjct: 312 EKIGE--KNGVVFIDDSKGTNVGATVAAIAGLQNP---LFVILGGMGKGQDFTPLRDALK 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 367 DKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|260591742|ref|ZP_05857200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
 gi|260536026|gb|EEX18643.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
          Length = 443

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 128/362 (35%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G   + +G    I +        
Sbjct: 94  EFAGRYTN---SKMICITGSNGKTTTTSLIYHIFKDAG---YDVGLAGNIGN-------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 --------SLALQVAEDPHAYYIIELSSFQLDN--MYNFRANIAILLNITPDHLDRYDFK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y +AKMR+ +     +S      D    KE+ K   +A C   S   +   I   + 
Sbjct: 190 FENYADAKMRIIQNQTKDDSFIYWNDDPVIKKELKKYDVHAVCYPFSELKEHGSIGYIEE 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +Q    ++E +D      L G   +YN+L A       GI    + + L     V
Sbjct: 250 GQYKIEQPEPFNMEQED----LSLTGRHNIYNSLAAGIASNISGIKKESIRKSLSDFPGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V   +    I    A   ++    L+++RT T     ++   G D+      I 
Sbjct: 306 EHRLEKVCKVAGVQYINDSKATNVDACWYALESMRTPT-----ILILGGKDKGNDYSAIK 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      +  +  DN +  D          GIP   +  +  + +    EM    D +
Sbjct: 361 DLVKEKCTGLVYLGADNKKLHDNFDSL-----GIP-VRDTHSMKDCVTACAEMAKPGDTV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|327458768|gb|EGF05116.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1057]
          Length = 459

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 139/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q+    G +    G    I   A     T  +
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASN 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G+                           TNL   H+DYH + + Y
Sbjct: 170 KDTLVMELSSFQLMGIEAF-----------------HPQIAVITNLMPTHLDYHGSLEEY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +         +          K   A  
Sbjct: 213 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQATVVPFSTTE--------KVDGAYI 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 264 EGDVLTFRGEAIMQVAEIGVPGSHNVENALATIAVAKLHGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGQVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA  + G+  +++  +  +A   A       D++++
Sbjct: 380 G-LKKMVILGQSAARVK-----RAADLAGV-SYLDATDVRDAAHKAYSQAEPGDIVLL 430


>gi|160914185|ref|ZP_02076407.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
 gi|158433996|gb|EDP12285.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
          Length = 525

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 132/375 (35%), Gaps = 37/375 (9%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
            ++      L      +I+ +TG+ GK+SV   + Q+  +   +                
Sbjct: 166 MYMKEAKQLLQQHQNLHIIGITGSYGKTSVKHILYQLIAQQYYTLMT----------PHS 215

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                   + + K L  L    V    + A         +  +K      T +G  H+  
Sbjct: 216 YNNKMGITLTIRKQLQSLHE--VFLCEMGADHVHEISALMAFVKPSWSIVTAIGPQHLST 273

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIH 278
            QT +   + KM+  E  LPK+    +  D+A+ +E         CR+++ G +      
Sbjct: 274 FQTMEHIVHEKMQAIE-CLPKDGIGFLNIDNAWIRE---YPIQNTCRIVTYGTHAAADYR 329

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +K +          I V+G D+ F   L G+  V N      +   +GI+ +++ E  + 
Sbjct: 330 IKDIVYSKQGASFKIHVKGVDYAFHTKLLGKHNVVNIAAGIAVAHCLGIELSVLQELTKH 389

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRD 395
           L  V  R +   T+S    +  D  +++         +     G+ IVV   F   GD +
Sbjct: 390 LPYVEHRLQLRPTSS--YTMLDDAYNSNVEGATYALEVLAKMEGKHIVVTPGFLDLGDME 447

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEA 448
           +     +GK    +AD  I+   +            I+ G+              N  EA
Sbjct: 448 ENAHVRLGKQLTQVADEVILVGQHQ--------SKHIVKGLQQAQYDSRHVYVCENIQEA 499

Query: 449 IRTAIEMLNKQDVLV 463
                ++  K  V++
Sbjct: 500 FELLKQLATKDSVVL 514


>gi|313898702|ref|ZP_07832237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312956586|gb|EFR38219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 523

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 137/384 (35%), Gaps = 54/384 (14%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTST 152
            + +  A  L   +  +I+ +TG+ GK+SV + + ++           G  + Q+G T T
Sbjct: 165 HYAADAAKLLRSNNALSIVGITGSYGKTSVKTILNELLSDVYYTLMTPGSYNNQMGITLT 224

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           I +  +                 +L   G  HV      H L Q     +K   G  T++
Sbjct: 225 IRNKLERLHEV------------FLCEMGADHVKEI---HDLMQ----FVKPQYGVVTSV 265

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    + +   + KM++ E  LP +    +  D+AY   +   +    CR++  G 
Sbjct: 266 GAQHLATFGSMENILHEKMQMIE-CLPADGIGFVNRDNAY---IRTYSIQNTCRIVWFGM 321

Query: 273 -QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +        +         T+  EG+   F   L G+  V N   A  +   +G+   +
Sbjct: 322 SEDADYRCCDIRYSEEGTSFTVIQEGQSHRFHTKLLGKHNVVNITCAIAVAHTLGVSWEI 381

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---V 387
           +   +EKL  V  R +          +  D Y          L+ ++ +   R I+    
Sbjct: 382 MALAVEKLPYVEHRLQ---VRKSFCTLLDDAYNSNPEGARCALEVLKQMKHQRFIITPGF 438

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI- 446
              G  +++ +  +  +IA  +    +V     +S         I  G+        R+ 
Sbjct: 439 LELGEQQEEEQYKLGEEIADSVDTAVLVGAVQTKS---------IAAGLTDSGFPKERVH 489

Query: 447 ------EAIRTAIEMLNKQDVLVV 464
                 EA+    +    QD +++
Sbjct: 490 VCDSFQEALAIVQKQAQLQDCVLL 513


>gi|312876350|ref|ZP_07736335.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796844|gb|EFR13188.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 428

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 168/439 (38%), Gaps = 54/439 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +  + +VVS    L      +     I V+          A R      +NI+A+
Sbjct: 34  DEAVDK-VQLVVVSPGVPLSKRPLVLAHKKGIEVIGEI-----ELAYRFCK--SKNIVAI 85

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++  + V +I ++        G                     L    +  +S 
Sbjct: 86  TGTNGKTTTTTLVGEILKKQYEDVVVCGNIG------------------LPFIDTIETSS 127

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T   +E SS  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE  + +
Sbjct: 128 KNTIFVLEISSFQLE--TIKYFKPKVGCILNITPDHLNRHMTMENYIKAKMRIFEN-IDE 184

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  D+  +++++  A              K     +      K  +  + EGK  
Sbjct: 185 MGYTVLNYDNNITRDLIGLAKGNVIVF------SKNKSQFENMVFVEKDTIYFTFEGKTQ 238

Query: 301 DFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + +      +PGE  + NAL A    +  GI+   + + L+    V  R EFV     G 
Sbjct: 239 EVMKKDEIFIPGEHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFV-AEINGI 297

Query: 357 RIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + Y D     +++ E  L+   +      I++   G D+ +        +A  +  + ++
Sbjct: 298 KFYNDSKGTNTDAAEKALRAFES-----PIILIAGGYDKGESFEKFASLVAKKVKKVFLL 352

Query: 416 TDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                  +   KI +E+   G   F       EA+R + E     D+++++     +  +
Sbjct: 353 ------GQTKHKIASELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLLS-PACASWDM 405

Query: 475 VTNGEKKMSVDCDIIREIL 493
             N E++  +  + + E+L
Sbjct: 406 FENYEQRGRMFKEYVNELL 424


>gi|239928208|ref|ZP_04685161.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291436539|ref|ZP_06575929.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339434|gb|EFE66390.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
          Length = 462

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 89/430 (20%), Positives = 141/430 (32%), Gaps = 42/430 (9%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A  +VVSSA    +      +   I VV  +   L+     L
Sbjct: 54  GVTVHIGH--AAGHLADDASCVVVSSAIREDNPELRRAAELGIPVVHRS-DALAALMDGL 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                   +AV GT GK++  S +       G             S+A    L  P    
Sbjct: 111 ------RPIAVAGTHGKTTTTSMLAVSLAALGRRP----------SYAIGGDLDAPGSNA 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L                 + S H                  N+  DH   + + +    +
Sbjct: 155 LHGEGEIFV---AEADESDRSFHKY--------APEVAIILNVELDHHANYASMEEIHQS 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
               F   +      +I AD   ++E+ +R   A  R ++ G  +   + +  V     K
Sbjct: 204 -FETFVGRIVPGGTLVISADHEGARELTRRLDGA-VRTVTYGEAEDADVRVLSVVPQGLK 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +VT+ ++G    F   +PG    +NA+ A     A+G+  A +   L     V  R + 
Sbjct: 262 SEVTVELDGAPLTFTVSVPGRHYAHNAVAALAAGAALGVPPAELAPALAAYTGVKRRLQL 321

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIAL 407
            G  + G ++   YAH    +   L+ +R       I VVF         +       AL
Sbjct: 322 KGEAA-GVQVVDSYAHHPTEMTADLEAMRAAAGDSRILVVFQPHLFSRTRELGKEMGRAL 380

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            LAD ++V D  P  EDP      E I               +  E       M    D+
Sbjct: 381 ALADASLVLDVYPAREDPIPGVTSELIIEAARAAGADVSAVHDEAEVPEAVAGMAKPGDL 440

Query: 462 LVVAGKGHET 471
           ++  G G  T
Sbjct: 441 VLTMGAGDVT 450


>gi|254994608|ref|ZP_05276798.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Mississippi]
          Length = 474

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 133/412 (32%), Gaps = 46/412 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A    +           LV+  T        +          + V+G+ GK+
Sbjct: 70  ADVVVYSNAIKDDNVELQSAIAAGKLVLRRTELLSKALGAG-------RTIVVSGSHGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +  I + +G+      PT  I   A                 +Y    G   V  
Sbjct: 123 STTGMIASIMEHAGMD-----PTVFIGGIAFHYGN------------NYKMGAGEWAVVE 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S          +       TNL  +H D +   +A        F   +     +++ 
Sbjct: 166 GDESDAG----FTELPCEIAVVTNLEWEHPDKYSCLEALERV-FSDFLRNVKAGGASVMP 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFD--FLF 304
                S+      +   C  ++ G +G  +       + +     I  + G++       
Sbjct: 221 -----SRLSFTLGNGTKCSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEICCGVRL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG   V NAL AA +   IG+    +   LE    V  RFE +  N  G     DYAH
Sbjct: 276 PVPGRHNVENALAAAAVAKHIGVGCNYIKAGLEGFMGVGRRFEII-ANVGGVTFVDDYAH 334

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +E      + + TSGR+I +                  A+   D  I+TD  P  E
Sbjct: 335 HPTEIEASRNAAKLSTTSGRVIGILQPHRFTRVQHFFKDFTSAISKFDYLILTDVYPAGE 394

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +         I  EI       +   +  +AI   +       DV++  G G
Sbjct: 395 EVISGCESLDIVREIKSRGFDQVVHASTPDAITDIVASVAQPGDVVIAMGAG 446


>gi|29348859|ref|NP_812362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340765|gb|AAO78556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 413

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 139/385 (36%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++    ++ +TG++GK++  S +  I + + 
Sbjct: 38  SPGIPNDAPLILKLKAQGTPVISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSA- 96

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                +G    I                       ++ +   +  +E SS  LD   +  
Sbjct: 97  --DLNVGLAGNIG----------------KSLALQVAEEHHDYYIIELSSFQLDN--MYN 136

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y +AK R+ +     ++      D    +E+ K  
Sbjct: 137 FRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTTDDAFIFWNDDPIIKQELAKHG 196

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     +   +   I   +   +   + +  ++E ++      L G+  +YN+L A  
Sbjct: 197 LKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNMEQEE----LALTGQHNLYNSLAAGI 252

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V    RG     D   T+  +      ++++T
Sbjct: 253 SANLAGITKENIRKALSDFKGVEHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMT 309

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +    V+   G D+      I   +    + +  +   N      EK+ A     G+P  
Sbjct: 310 TKT--VLILGGKDKGNDYTEIEDLVREKCSALVYLGLHN------EKLHAFFDRFGLPVA 361

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +A+  A ++  K + +++
Sbjct: 362 DVQTGMKDAVEAAYKLAKKGETVLL 386


>gi|238060247|ref|ZP_04604956.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237882058|gb|EEP70886.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 488

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 147/426 (34%), Gaps = 59/426 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V SSA               + V+  +       A+ + G+     +A+ GT GK
Sbjct: 79  GVDTVVYSSAIPQDHLELVEARRRGLRVLHRSEA----LAAAMTGRL---TVAIAGTHGK 131

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++  S V  + Q++G     +  G  S + S A                          H
Sbjct: 132 TTTTSMVTMVLQQAGADPSFVIGGEISEVGSGAHHGTG--------------------EH 171

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             VEA        R   I +      TN+  DH++ +        A    F  L  +   
Sbjct: 172 FVVEADES----DRSFLIYRPYLSLITNIEADHLNTYGDLATLEAAFAE-FARLTDRRGF 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-D 301
            +  ADD   + + +     G RV + G      + L ++ +     +    ++G+   +
Sbjct: 227 IVTCADDPGGRRLAQTLRAEGRRVHTYGEAADADLRLSEIVSSAQGVRYLAEIDGRSLGE 286

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  P+PG     N+  A      +G+        L     V  RFE  G  + G  +Y +
Sbjct: 287 FRLPVPGRHMGLNSASAVLTAYLLGLPVEAAEAALAAFPGVRRRFERKGV-ADGVLVYDE 345

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YA+   S+ + L+ +R +   GR+IVVF                 AL +AD  ++ +   
Sbjct: 346 YAYHPTSMTLALQTLREVAGDGRLIVVFQPYRLYRTRDLQAEIAAALGIADELVLLEVFG 405

Query: 421 RSE--DPEKIRAEIIHGIPGFIEKGNRI--------EAIRTAIEMLNKQDVLVVAGK--- 467
             E   P +  A ++  +P      +R           +  A       DV+V  G    
Sbjct: 406 PGEVRQPGEGSAALVEAVP---LPADRKVFVGSWDDVPVEVA-RRARPGDVVVTMGAPPI 461

Query: 468 ---GHE 470
              G E
Sbjct: 462 SLMGDE 467


>gi|162455697|ref|YP_001618064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161166279|emb|CAN97584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 490

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 125/391 (31%), Gaps = 34/391 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+DSR I  G  FVA+ G   DGH F+  A  +GA A +VS   +L           
Sbjct: 33  RGVSTDSRTIAPGAAFVALAGESFDGHRFLDAAAQRGAAAFIVSREVALPPGGGA----- 87

Query: 91  PILVVDNTRKFLSLFASRLYGKH--------PENILAVTGTSGKSSVASFVQQICQRSGL 142
             ++V++    L   A     +         P  I+A+ G++GK++    +  +    G 
Sbjct: 88  --VLVNDGLTALGALARAHRERWRAGAHPGGPRAIVAIGGSAGKTTTTRTIAALLAAVGR 145

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                                  + I L   L  L  +    V    ++   +   L  I
Sbjct: 146 ------------GEVHATAGNLNNAIGLPMTLLGLEDRHRFAVVEIGTNQRGEVAALARI 193

Query: 203 K-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T++G +H +   T +     +  L   L P E  A+   DD    E ++RA 
Sbjct: 194 AGPDLAVLTSIGVEHTEGLGTLEDVAAEEGDLLAAL-PAEGVALGNGDDVKVVEQLERAG 252

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A       G + +     +         V I   G+  + + PL GE     A  A  +
Sbjct: 253 AARRITYGFGERARIRIAGRRPVGVRGTSVRIERGGEALELVVPLLGEAGALAAAAAVAV 312

Query: 322 CIAIG---IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377
                   + +         L         V     G  +  D Y     S+   L+   
Sbjct: 313 VEEAVGEPLSTERAARAAAGLAPPGDGRLSVRELPDGTVVIDDSYNANPLSMRSSLRTAV 372

Query: 378 TITSG-RIIVVFGCGGDRDQGKRPIMGKIAL 407
            +       +V   G  R+ G        AL
Sbjct: 373 EVAEALGKRLVLLLGEMRELGALAAAEHDAL 403


>gi|221065136|ref|ZP_03541241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
 gi|220710159|gb|EED65527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
          Length = 632

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 156/417 (37%), Gaps = 55/417 (13%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             +L   R    +   +L +TGT+GK++V S   Q+ +  GLS   +G    I     D 
Sbjct: 234 AFALKGLREAHGYAPKVLGITGTNGKTTVTSLTGQLLEHGGLS---VGVAGNIGPTLLDT 290

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    L +A             +E SS  LD  R  G +  A +  N+ +DH+D+H
Sbjct: 291 LSGRIDAETLPQA-----------WVLELSSFQLDDCR--GFEPTAATVLNITQDHLDWH 337

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--------KRAHNAGCRVLSVG- 271
              QAY +AK  +F E    ++  ++  +D     ++        KR        ++ G 
Sbjct: 338 GGMQAYADAKAHVFGE----QALMVLNREDPVVMAMLPAPVAVPGKRGKTFQRAHVTFGG 393

Query: 272 ----YQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNA 315
                 G F    +  +  +    +   + +GK+ D L            + G     NA
Sbjct: 394 DMPRRPGDFGLEVVNGMTWLVRAHEADETSKGKNVDDLHIVRLMPADALRIRGRHNAINA 453

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  L    G   A +L  L +    P R + VG    G   Y D +  +N +   +  
Sbjct: 454 LSALALATGAGCTLAPLLYGLREYRGEPHRVQPVG--RVGDVEYFDDSKGTN-VGATVAA 510

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +  +     IVV   G  + Q   P+   ++  +    ++  D P      +IR  +   
Sbjct: 511 LMGLGPDHRIVVILGGLGKGQDFTPLAAPVSRYVRAAVLIGQDAP------QIREALGDT 564

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               ++     +A++ A  + +  D ++++     ++ +  +   +     + +RE+
Sbjct: 565 GVTLVDAATMQDAVQQAARLAHAGDAVLLS-PACASMDMFKDYADRAHQFVEAVREL 620


>gi|90413041|ref|ZP_01221039.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
 gi|90326056|gb|EAS42495.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
          Length = 486

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 119/362 (32%), Gaps = 33/362 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  +VVS+A +  +          I VV    + L+      +G      +A+ GT G
Sbjct: 80  NGASVVVVSTAIAQDNPELVAARELRIPVVRRA-EMLAELMRYRHG------IAIAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + + QI   +GL    +      S+        +         ++       + +
Sbjct: 133 KTTTTALMTQIYFEAGLDPTFVNGGLVKSAGTNARLGCS------RYLIAEADESDASFL 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +             F   LP    A+
Sbjct: 187 ---------------HLQPMVSVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++ R                   ++     H      +     D +    
Sbjct: 232 MCVDDPVVRELLPRI-GRQIITYGFSDDADVRIVEYKQYAHQGHFTIVRAGKPDLNVKLN 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDY 362
           +PG+    NA  A  +    G+D   ++  L +      RF+ +G   T +    +  DY
Sbjct: 291 IPGKHNALNATAAVAVATEEGVDDDAIIRALLEFEGTGRRFDHLGEFDTGNGSVMLVDDY 350

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H  + +++ ++  R      R++++F                  L+  D+ ++ D    
Sbjct: 351 GHHPSEVDVTIQAARAGWEKKRLVMIFQPHRYSRTRDLYEDFAHVLEQVDVLLMLDVYSA 410

Query: 422 SE 423
            E
Sbjct: 411 GE 412


>gi|324993410|gb|EGC25330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK405]
 gi|324995278|gb|EGC27190.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK678]
 gi|325697065|gb|EGD38952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK160]
 gi|327461684|gb|EGF08015.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1]
 gi|327469030|gb|EGF14502.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK330]
 gi|327489537|gb|EGF21330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1058]
          Length = 459

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 139/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q+    G +    G    I   A     T  S
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASS 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G                 ++         TNL   H+DYH + + Y
Sbjct: 170 KDTLVMELSSFQLMG-----------------IEDFHPQIAVITNLMPTHLDYHGSVEEY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+            +          K   A  
Sbjct: 213 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASHTQATVVPFSTTE--------KVDGAYL 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 264 EGDVLTFRGEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGQVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA  + G+  +++  +  +A   A       D++++
Sbjct: 380 G-LKKMVILGQSAARVK-----RAADLAGV-SYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|225077400|ref|ZP_03720599.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
 gi|224951284|gb|EEG32493.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
          Length = 445

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 163/420 (38%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T              
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT-------------- 147

Query: 167 PIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   + L  +G       +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 148 ----PVLEAELQREGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F      +   ++ +DD + + + +       +  S+ ++  F   ++   
Sbjct: 202 DYAHTKAKIFRG----DGVQVLNSDDVFCRAMKRAGRE--VKWFSLEHEADFWLERETGR 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +  I+ +        PL G     N + A  LC A+G+    +LEH++    +P 
Sbjct: 256 LKQDDEDLIATQN------IPLQGLHNAANVMAAVALCEAVGLQREALLEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G   + G +++D +  +N +      I  + +   + V   G  + Q   P+   
Sbjct: 310 RVEKIGE--KNGVVFIDDSKGTN-VGATAAAIAGLQNP--LFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      + ++  D P      +IR ++        +     EA++TA       D++++
Sbjct: 365 LKDKAKGVFLIGVDAP------QIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|253568794|ref|ZP_04846204.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298387941|ref|ZP_06997490.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
 gi|62900586|sp|Q8A256|MURD_BACTN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251840813|gb|EES68894.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298259348|gb|EFI02223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
          Length = 444

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 139/385 (36%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++    ++ +TG++GK++  S +  I + + 
Sbjct: 69  SPGIPNDAPLILKLKAQGTPVISEIEFAGRYTDAKMICITGSNGKTTTTSLIYHIFKSA- 127

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                +G    I                       ++ +   +  +E SS  LD   +  
Sbjct: 128 --DLNVGLAGNIG----------------KSLALQVAEEHHDYYIIELSSFQLDN--MYN 167

Query: 202 IKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       N+  DH+D +    Q Y +AK R+ +     ++      D    +E+ K  
Sbjct: 168 FRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTTDDAFIFWNDDPIIKQELAKHG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             A     +   +   I   +   +   + +  ++E ++      L G+  +YN+L A  
Sbjct: 228 LKAHLYPFAAVKEDGAIAYVEDHEVKITEPIAFNMEQEE----LALTGQHNLYNSLAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + + L     V  R E V    RG     D   T+  +      ++++T
Sbjct: 284 SANLAGITKENIRKALSDFKGVEHRLEKV-ARVRGIDFINDSKATN--VNSCWYALQSMT 340

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +    V+   G D+      I   +    + +  +   N      EK+ A     G+P  
Sbjct: 341 TKT--VLILGGKDKGNDYTEIEDLVREKCSALVYLGLHN------EKLHAFFDRFGLPVA 392

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +A+  A ++  K + +++
Sbjct: 393 DVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|290956552|ref|YP_003487734.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
 gi|260646078|emb|CBG69171.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
          Length = 461

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 94/430 (21%), Positives = 150/430 (34%), Gaps = 43/430 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A  +VVSSA    +      +   I VV  +   L+     L
Sbjct: 54  GATVHIGH--AAGHLADDATCVVVSSAIRADNPELARAAELGIPVVHRS-DALARLMDGL 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                   +AV GT GK++  S +       GL            S+A    L  P    
Sbjct: 111 ------RPIAVAGTHGKTTTTSMLAVSLGELGLKP----------SYAIGGDLDVPGSNA 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L                 + S H                  N+  DH   + +      A
Sbjct: 155 LHGDGEIFV---AEADESDRSFHKY--------APEVAIVLNVELDHHANYASMDEI-YA 202

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNK 288
               F   +      +I AD   ++E+  R      RV++ G  +   + +  V A   K
Sbjct: 203 SFETFAGRIVPGGTLVISADHEGARELTSRLSG--VRVVTYGEREDADVRVLSVVAQGLK 260

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +VT+ ++G++  F   +PG    +NA+ A    +A+G+ +A +   L     V  R + 
Sbjct: 261 SEVTVLLDGQEITFAVSVPGRHYAHNAVAALAAGVALGVPAAELAPALAAYTGVKRRLQL 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIAL 407
            G  +RG ++   YAH    +   L+ +R+      I VVF         +       +L
Sbjct: 321 KG-EARGVQVIDSYAHHPTEMTADLEAMRSAAGDARILVVFQPHLFSRTQELGTEMGQSL 379

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            LAD ++V D  P  EDP      E I A             ++ E   T   M    D+
Sbjct: 380 ALADASVVLDIYPAREDPIPGVTSELIIAAARSAGADVTALHDKAEVPGTIAGMAKPGDL 439

Query: 462 LVVAGKGHET 471
           ++  G G  T
Sbjct: 440 VLTMGAGDVT 449


>gi|255264765|ref|ZP_05344107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
 gi|255107100|gb|EET49774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
          Length = 468

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 142/409 (34%), Gaps = 46/409 (11%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120
           G  A++VS      Y   + +        + V ++   F   +A+  + +      ++AV
Sbjct: 66  GVSALIVSPGIPHLYPEPNKTIAAAWAAGVPVDNDIGLFFRSYATGDWDRFDVAPQVVAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  I    G  +   G                         L    + 
Sbjct: 126 TGSNGKSTTSALIHHILTEVGRPTQLAGNIG-------------------RGVLDIDPAI 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P+
Sbjct: 167 DGEVVVLELSSYQTDLAR--SLTPDIAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPE 224

Query: 241 ESPAIIYADDA--YSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVE 296
            +   +   +    S ++M     +    +SV    QG   ++       ++ +      
Sbjct: 225 RAVIGVDEVEGQYLSNQMMDGMDPSRIIQISVDRKLQGPGWNIFARKGFLSEYRNGRQAG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D   +  LPG     NA  A   C ++G+   ++ + L     +P R + +       
Sbjct: 285 SIDLRDIIGLPGAHNHQNACAAYAACRSLGLAPKVIEQALHSFGGLPHRSQQIADQDGVR 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   +S    L   + I     I     G +++ G   +  ++        I  
Sbjct: 345 YVNDSKATNVDSAAKALAAFKNIR---WIC---GGLEKEGGLTGLKDQLGAVRKAYVIGR 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +    +   E +  +I   I          EA+  A +     D +++A
Sbjct: 399 EAASFARQLEGVETQICTTIQ---------EAVAAAYQDAEAGDTVLLA 438


>gi|110639124|ref|YP_679333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|118595652|sp|Q11RH3|MURD_CYTH3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110281805|gb|ABG59991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 450

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 144/427 (33%), Gaps = 64/427 (14%)

Query: 58  LFIPQ------AIAQG---------AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
            FI +      A  QG         A+ IV S     +     +  +  I V+       
Sbjct: 39  AFIAELQQAGIAFEQGVHSEEKILSAQLIVKSPGIPEKAPIMKLIRSKAIEVISEIEFAY 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                          +A+TG++GK++       I  + G S    G   T          
Sbjct: 99  RHI------HPGAKFIAITGSNGKTTTTLLTHHILAQLGYSVGLGGNIGT---------- 142

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ- 221
                         +  +      +E SS  LD   +   K       N+  DH+D ++ 
Sbjct: 143 ---------SLARQIIHEKKDVYVLELSSFQLDD--MYTFKADVAVLLNITPDHLDRYEY 191

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFI 277
             + Y  +K R+F+ L P +       D     E  K+ H    R + V     Y     
Sbjct: 192 KFENYTASKFRIFQNLTPADYYITYSEDSVI--ESYKKDHPVDARYVPVSLKQLYSAGAY 249

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +K   IH      ++   ++F    PL G+    N + A    ++IG D    +  ++
Sbjct: 250 SDEKTIQIHALDDTVVTCNTEEF----PLQGKHNYINIMAALNAAVSIGADIHKSIASIK 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                P R EFVG+      +    A   +S+   L +++T      +V+   G D+   
Sbjct: 306 SFRNAPHRLEFVGSIYGVKFVNDSKATNVDSVWYALDSMKT-----PVVLIVGGVDKGND 360

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              I   +   +  +  +  DN       K+ +     +    E  + +EAIR A +   
Sbjct: 361 YSQIEALVKEKVHTVVALGKDN------SKVLSGFASMVSEIKEAHSMVEAIRIAHDSAK 414

Query: 458 KQDVLVV 464
           K D +++
Sbjct: 415 KGDTVLL 421


>gi|25010591|ref|NP_734986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae NEM316]
 gi|77413561|ref|ZP_00789749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
 gi|30316027|sp|Q8E6P1|MURD_STRA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23094944|emb|CAD46166.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160390|gb|EAO71513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
          Length = 451

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 138/426 (32%), Gaps = 59/426 (13%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---- 103
           DG  F         + +G + +  S    L D         P +  +N   +K L     
Sbjct: 39  DGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVKKALEKQIP 98

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       ++ +TG++GK++  + + ++    G      G    I   A 
Sbjct: 99  VLTEVELAYLVSE---SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG---NIGFPAS 152

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +          L   LS     GV                    +      TNL   H+D
Sbjct: 153 EVVQAADDKDILVMELSSFQLMGVKEF-----------------RPHIAVITNLMPTHLD 195

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK  + +  +      ++  +   SKE+ K          S   +    +
Sbjct: 196 YHGSFEDYVAAKWNI-QNQMSSSDFLVLNFNQGISKELAKTTKATIVP-FSTTEKVDGAY 253

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++     +  + + +  +         +PG   V NAL    +    GI + ++ E L  
Sbjct: 254 VQDKQLFYKGENIMLVDD-------IGVPGSHNVENALATIAVAKLAGISNQVIRETLSN 306

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R + +G    G   Y D   T+  +    K +        +++   G DR    
Sbjct: 307 FGGVKHRLQSLG-KVHGISFYNDSKSTN--ILATQKALSGF-DNTKVILIAGGLDRGNEF 362

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             ++  I      + +        E   +++         + +  +  +A+  A E+  +
Sbjct: 363 DELIPDITGLKHMVVL-------GESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQ 415

Query: 459 QDVLVV 464
            DV+++
Sbjct: 416 GDVILL 421


>gi|332525742|ref|ZP_08401889.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332109299|gb|EGJ10222.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 861

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 143/388 (36%), Gaps = 36/388 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF +   G+ P  ++AVTGT+GK++V+  +  +   +G     +G T+T   +   +++ 
Sbjct: 460 LFPAGQDGRIP--VVAVTGTNGKTTVSRLIAHLFNAAGYK---VGMTNTDGVWVDGHQID 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           +        A + L+        +E +  G+ +  L   +      TN+G  DH+   Y 
Sbjct: 515 SGDCSGPKSARNVLAHPDTEAAVLETARGGMLREGLGFDRCQVAVVTNVGAGDHLGLNYI 574

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T +     K R+  + + +   A++ A D  +   ++ A +    V+     G    + 
Sbjct: 575 TTVEDLAVLK-RVIVQNVAESGYAVLNAADPIT---LQMAQHCPGGVILFAVDGHLPAMV 630

Query: 281 KVCAIHNKQQV-------------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              A   +                   V  ++          FQV NAL A       G+
Sbjct: 631 AHRAQGGRTVFVDGDAIVAVNGSARARVPLREVPLTRNGTIGFQVENALAAVAAAWGCGL 690

Query: 328 DSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
               V   L             F   + RG  +  DY H ++++  ++  +  + + R  
Sbjct: 691 SFDAVSAGLASFVNDAHNAPGRFNVMDYRGATVIADYGHNADAMRALVGAVEAMPAQRRS 750

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGN 444
           VV    GDR         +I     D  ++  D   R     ++ A +  G+ G   +  
Sbjct: 751 VVISAAGDRRDEDIREQTQILGAAFDEVLLYQDAAQRGRADGEVIALLREGLRGA-PRTR 809

Query: 445 RIE-------AIRTAIEMLNKQDVLVVA 465
           R+E       AI  A+E L   D+ +V 
Sbjct: 810 RVEEIHGEFVAIDQALESLQPGDLCLVL 837


>gi|88704101|ref|ZP_01101816.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
 gi|88701928|gb|EAQ99032.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
          Length = 463

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 131/428 (30%), Gaps = 48/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A++  A+ +V+SSA    +          I VV        L   R       
Sbjct: 55  GHR--AAAVSD-ADVVVISSAVGEDNDELVAARERRIPVVRRAEMLAELMRHRYG----- 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  +   +GL      PT  I                    ++
Sbjct: 107 --IAVAGTHGKTTTTSLIAAVFAAAGLD-----PTFVIGGRVNSTGTHAQLGAGRF-LIA 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH++ +    A        F 
Sbjct: 159 EADESDASFL---------------HLQPMVTVVTNIEADHMETYGGDFAELRRTFVEFL 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD     +     + G  +L  G+ +     +  +       +  + 
Sbjct: 204 HNLPFYGLAVLCVDDPV---LAGLDADLGRPILGYGFSEHADYRISDLEPDGLSTRFVVR 260

Query: 295 VEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
                        +PG   V NA  A  +    GID A++   L     V  RF     V
Sbjct: 261 RPDAHPPLAISLNMPGPHNVLNATAAVAVATDQGIDDAVIQNALANFGGVGRRFSVFDKV 320

Query: 350 GTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              +    +  DY H    +   L    +     R+++V+                  L 
Sbjct: 321 RIGAHEVTLVDDYGHHPTEVAATLASARQAWPERRVVMVYQPHRFTRTRDLYDDFVSVLS 380

Query: 409 LADIAIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D  ++ +  P  E      D   +   I   G    +   + +E     +++L   D+
Sbjct: 381 ETDFLVLLEVYPAGEEVITGADSRSLARSIRQRGQLDPLYAASALEVPALLVDVLEPGDI 440

Query: 462 LVVAGKGH 469
           +V  G G 
Sbjct: 441 VVTQGAGD 448


>gi|304413644|ref|ZP_07395088.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
 gi|304283735|gb|EFL92129.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
          Length = 493

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 141/424 (33%), Gaps = 51/424 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  +VVSSA    +          I V+    + L+      +G      +AV GT G
Sbjct: 77  QGASVVVVSSAIPENNVEIVAARAARIPVIRRA-EMLAELMRYRHG------IAVAGTHG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  I   +GL    +      ++        +         ++       + +
Sbjct: 130 KTTTTAMVASIYADAGLDPTFVNGGLVKAAGVHARLGCS------RYLIAEADESDASFL 183

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +Q            F   LP    A+
Sbjct: 184 ---------------HLQPMVAIVTNIEADHMDTYQGNFENLKQTFINFLHHLPFYGRAV 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           +  DDA  +E++ R       + + G+     I +K       +   T+   GK +   +
Sbjct: 229 MCIDDARIREILPRIGR---HITTYGFSDDADIQIKDYQQQQAQGCFTLCRPGKTELKVM 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR 357
              PG     NA  A  +     I    +L  L        RF+F+G       N + G 
Sbjct: 286 LNAPGCHNALNAAAAIAVATEERISDDCILTALANFQGTGRRFDFLGHFSLEKVNGKKGS 345

Query: 358 I--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +    DY H    + + +K  R      RI+++F                  L   D+ +
Sbjct: 346 VMLVDDYGHHPTEVAVTIKAARAGWPEKRIVMIFQPHRYSRTHDLYDDFAKVLAEVDVLL 405

Query: 415 VTDDNPRSEDP------EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVA 465
           + +     E P        +   I    P  +E     +    +    + LN  D++++ 
Sbjct: 406 MLNVYAAGEKPIPGADSRSLCRTIRVRNPDQLEPIFISDNEALLDILAKQLNDNDLVLIQ 465

Query: 466 GKGH 469
           G G+
Sbjct: 466 GAGN 469


>gi|325694125|gb|EGD36043.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK150]
          Length = 459

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 143/418 (34%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q+    G +    G    I   A     T  S
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASS 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G                 ++       + TNL   H+DYH + + Y
Sbjct: 170 KDTLVMELSSFQLMG-----------------IEDFHPQIAAITNLMPTHLDYHGSVEEY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +   A     +          K   A  
Sbjct: 213 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQAAVVPFSTTE--------KVDGAYL 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   +T   E         +PG   + NAL    +    GID+  + E L     V  R 
Sbjct: 264 DGDVLTFRGEAIMQAAEIGVPGSHNIENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +    ++ + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGRVNE--VVFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA    G+  +++  +  +A   A       D++++
Sbjct: 380 G-LKKMVILGQSAARVK-----RAADQAGV-SYLDATDVRDAAHKAFAQAEPGDIILL 430


>gi|325677954|ref|ZP_08157596.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus albus 8]
 gi|324110508|gb|EGC04682.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus albus 8]
          Length = 477

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 149/433 (34%), Gaps = 55/433 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+ Q      GAE I+ ++A    +        +  +V +   + L +           N
Sbjct: 62  FLGQKAENIEGAELIIYTAAIMADNPELIAAKASDAIVCERA-EILGVITGWY-----SN 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            L V GT GK++ +S + +I   +G     +      S         + S          
Sbjct: 116 ALCVCGTHGKTTTSSMLTEIFVDAGEDISCVIGGKLPSIGGSGRAGKSDS---------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +   +           Q     +        N+  DH++Y +  +    +    F +
Sbjct: 166 MVCEACEY-----------QDHFLKLFPDVAIILNVDADHLEYFKNIENIIKS-FHTFAD 213

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISV 295
           +  K    I   DDA +++ ++        ++S G+  K  +  ++ +      +  +  
Sbjct: 214 MATK--AVIFNGDDANTRKSLEGISGK--ELISFGWDRKNDYSAEIISKQGLVTKFRVFF 269

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+   +    +PG+  V NAL A       G+      + L   H    RF+ +     
Sbjct: 270 KGEPAAEMEINVPGDHNVVNALAAIAAARYSGLSFEDAAKGLAAFHGAIRRFQLIDKVG- 328

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  I  DYAH    + + LK  + +   R+  VF                 AL++ADI++
Sbjct: 329 GITIVDDYAHHPAEIAVTLKAAKGLDFNRVWAVFQPFTYSRTEILMDDFARALEIADISV 388

Query: 415 VTDD-NPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEA----------IRTAIEML 456
           +TD    R ++   I  E++                 ++  A          I   I+  
Sbjct: 389 ITDIMGSREKNEHGIYTEMLGAKTKNAVWFNTPHHVVDKQTAEQKEKNFDECIDYIIKNK 448

Query: 457 NKQDVLVVAGKGH 469
            + D+++  G G 
Sbjct: 449 QQGDIVITLGCGD 461


>gi|307610451|emb|CBX00022.1| hypothetical protein LPW_17781 [Legionella pneumophila 130b]
          Length = 441

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 130/367 (35%), Gaps = 31/367 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  K+   ++AV GT GK++  S +  I  ++G++   +     +SS    +  
Sbjct: 81  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFL--IGGVSSDFNTSAC 136

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 ++ +A  Y S+                       +       NL  DH D +  
Sbjct: 137 LGKGRWFVIEADEYDSAFFDKRPKFMHY------------RPNIAVLNNLEFDHADIYPD 184

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +PK   AI   DD    EV+ R      R+ ++   G+   + ++
Sbjct: 185 LAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQ--FSRIETLALSGEAEWVAEL 241

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 Q   +   G   +  +PL G+F V N L A       G++  +  + LE+   V
Sbjct: 242 IDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPMVAAKALEQFSPV 301

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVF-GCGGDRDQGKRP 400
             R E V +N  G  +Y D+AH   ++   +    R+    RI  V          G   
Sbjct: 302 KRRLE-VRSNRHGITVYDDFAHHPTAITKTIDALKRSGRHQRIFAVMEFASYTMRTGVHA 360

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                AL   D A V        +P+   ++  +      +    N  E +   I+ + +
Sbjct: 361 AEMAHALAPVDGAYVL-------EPQDFNLKDFVSSWTCPYKICKNNEEIVNEIIKAVRE 413

Query: 459 QDVLVVA 465
            D ++V 
Sbjct: 414 GDAVLVM 420


>gi|241765423|ref|ZP_04763393.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
 gi|241364828|gb|EER59801.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
          Length = 477

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 137/416 (32%), Gaps = 48/416 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V S+A +  +          I VV      L+       G      +A+ GT GK++ 
Sbjct: 67  AVVTSTAVTGDNPEVLAAREKKIPVVPRALM-LAELMRLKQG------IAIAGTHGKTTT 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S V  +   +GL      PT  I                L  A +        ++ VEA
Sbjct: 120 TSLVTSVLAEAGLD-----PTFVIGGR-------------LNSAGANAKLGSGDYIVVEA 161

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                D   L+ +  +    TN+  DH++ +             F   +P    AI+  D
Sbjct: 162 DES--DASFLNLL-PVMAVVTNIDADHMETYGHDFGRLKKAFVDFLHRMPFYGTAILCVD 218

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGK----DFDFLF 304
               ++++    +  C V S G+          V A   + + T+         D + + 
Sbjct: 219 SPAVRDIL---PSVTCPVTSYGFSEDAQVRAINVRAEAGQMRFTVQRRNGVTLPDMEVVL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
            L GE  V NAL A  + + + I    VL  L     V  RF+  G           +  
Sbjct: 276 NLAGEHNVLNALSAIAVAVELNIPDEAVLRALAGFKGVGRRFQRYGDLPAKGGGHFTVID 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +   L   R    GR +V+ F                  +  AD  ++T+  
Sbjct: 336 DYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVKVIGSADAVLLTEVY 395

Query: 420 PRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              E P          RA  + G    +   N  + ++   +     DV++  G G
Sbjct: 396 AAGEAPVVAADGRSLARALRVAGRVEPVFVDNVADMVQVIADNAKDGDVVMCMGAG 451


>gi|270295451|ref|ZP_06201652.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
 gi|270274698|gb|EFA20559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
          Length = 444

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 133/362 (36%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+   +G    I +        
Sbjct: 94  EFAGRYTN---AKMVCITGSNGKTTTTSLIYHIFKSAGLN---VGLAGNIGN-------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                  + AL   + Q   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 -------SLALQVATEQH-DYYVIELSSFQLDN--MYNFRANIAVLMNITPDHLDRYDHC 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +    +++      D    +E+ K    A     +   +   I   + 
Sbjct: 190 MQKYVDAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGLRAHLYPFAAVKEDGAIAYVED 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +   + +  ++E ++      L G   +YN+L A       GI    + + L     V
Sbjct: 250 GEVEINEPIAFNMEQEE----LALHGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V T  RG     D   T+  +      ++++T     V+   G D+      I 
Sbjct: 306 EHRLEKVAT-VRGVSFINDSKATN--VNSCWYALQSMTGKT--VLILGGKDKGNDYTEIE 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    + +  +   N   E        +  G+P    +    +A+  A ++  K + +
Sbjct: 361 DLVREKCSALVYLGLHN---EKLHAFFDRL--GLPVADVQTGMQDAVEAAFKLAKKGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|171742518|ref|ZP_02918325.1| hypothetical protein BIFDEN_01630 [Bifidobacterium dentium ATCC
           27678]
 gi|171278132|gb|EDT45793.1| hypothetical protein BIFDEN_01630 [Bifidobacterium dentium ATCC
           27678]
          Length = 532

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 125/437 (28%), Gaps = 58/437 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SSA    +            +V  +   L+L          +  + V G  GK
Sbjct: 99  GARTVVFSSAIKPDNPEIVAAYEAGERIVHRS-DILALLM------QSKRAVTVAGAHGK 151

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S +  I   +G             S+A    +       L    +   S  V    
Sbjct: 152 TTTSSMLAHILVNAGEGE------LADPSYAIGGSIQGKDGATLDGGHAGKGSVLVAEAD 205

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S                  TN   DH+D++ T+  Y  A     E         I+
Sbjct: 206 ESDGSFA-------KYHPEIAIITNAEADHLDHYGTEAKYRAA---FVEHAGCAGKAVIM 255

Query: 247 YADDAYSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVT----------- 292
             DD  +  V++       R   V S         L     +  + +             
Sbjct: 256 CGDDDGALAVLRALKTEVARHVVVYSTQPSEDLGDLNGAAHVRIESESESTQSGAEHFIL 315

Query: 293 ------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 + VE +       +PG     NA  A    + +G+D                RF
Sbjct: 316 HLPAGLVDVEERRVPVTLTVPGIHNARNATAALLAAVMLGVDVERAAAAATSFLGAARRF 375

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +  G+ ++   +  DYAH    +  +L    R      I V+F                 
Sbjct: 376 QIRGSVNQ-VTVIDDYAHHPTEIAALLDAARRRYPEAGIHVIFQPHLFSRTMFFAREFAE 434

Query: 406 ALDLADIAIVTDDNPRSED--------PEKIRAEIIHGIPGFIE-----KGNRIEAIRTA 452
           AL  AD  IVT   P  E         P+ I  E +       +       +   A +  
Sbjct: 435 ALAKADDVIVTGIFPAREKQEDFPTVSPDTIVNEAVKLEHEPADDWIRGVDDMRTAAQMM 494

Query: 453 IEMLNKQDVLVVAGKGH 469
           +   +  DV+   G G 
Sbjct: 495 VMRAHHGDVIFTVGAGD 511


>gi|291615173|ref|YP_003525330.1| UDP-N-acetylmuramate/alanine ligase [Sideroxydans lithotrophicus
           ES-1]
 gi|291585285|gb|ADE12943.1| UDP-N-acetylmuramate/alanine ligase [Sideroxydans lithotrophicus
           ES-1]
          Length = 486

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 79/454 (17%), Positives = 143/454 (31%), Gaps = 77/454 (16%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            GH      +   A+A+VVS+A    +          I +V      L+       G   
Sbjct: 55  HGHD-ANNLLD--ADAVVVSTAVKADNPEMMAAREQHIPIVPRAVM-LAELMRLRQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S V  +  + G       PT  I      +              
Sbjct: 108 ---IAVAGTHGKTTTTSLVTSVLAKGGYD-----PTFVIGGRLNSSGANARLGT------ 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G   V+    S     +    +  I    TN+  DH++ +             F
Sbjct: 154 ------GEFIVAEADESDASFLY----LTPILAVVTNIDADHMETYGHDFGKLKQAFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E LP    AI+ ADD   ++++ R       + + G   + + ++ V   H   ++  +
Sbjct: 204 VERLPFYGRAILCADDENVRDILPRISKP---ITTYGLS-EDVQIRAVDVRHEGGRMRFT 259

Query: 295 VEGK------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            + +            D +    L G   V NAL A  + + +G+  + ++  L +   V
Sbjct: 260 AQCRHDEKCLFEGKPIDLEVTLNLAGMHNVLNALAAIAVGLEVGVAPSAIVAALAEFEGV 319

Query: 343 PGRFEFVGT------------------NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGR 383
             R +  G                         +  DY H    ++  L  +R      R
Sbjct: 320 GRRMQRYGEIPLPNPLPQAGEGANAAAAGGSFTLIDDYGHHPVEMKATLAAVRGAFPGKR 379

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +++ F                  L   D   + +     E P  I A     +   +   
Sbjct: 380 LLLAFQPHRFTRTRDLFEDFVKVLGGVDALALAEVYAAGEQP--IVAADGRALMHALRVA 437

Query: 444 NRIEAI---------RTAIEMLNKQDVLVVAGKG 468
            + EA+         +T ++M    DV++  G G
Sbjct: 438 GQNEAVFVENIADMPQTIMQMAQDGDVVLTMGAG 471


>gi|281424945|ref|ZP_06255858.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
 gi|281400789|gb|EFB31620.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
          Length = 443

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 127/351 (36%), Gaps = 37/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G   + +G    I                     
Sbjct: 102 SKMVCITGSNGKTTTTSLIYHIFKSAG---YDVGLAGNIG----------------KSLA 142

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             ++     +  +E SS  LD   +   +       N+  DH+D +    + Y +AKMR+
Sbjct: 143 LQVAEDPHEYYVIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDFKFENYADAKMRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +   P++S      D    KE+ K    A     S   +   I   +      +     
Sbjct: 201 IQNQTPEDSFIYWNDDPVIKKELEKFEIKAYACPFSELKEKGSIGYIEAGTYKLEYPTPF 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++E +       L G+  +YN+L A       GI   ++ + L     V  R E V    
Sbjct: 261 NMEQEA----LSLTGKHNIYNSLAAGLASNIAGIKKEIIRKSLSDFPGVEHRLEKVC--K 314

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            GG  Y++ +  +N ++     + ++ +    V+   G D+     PI   +      + 
Sbjct: 315 VGGVQYINDSKATN-VDACWYALESMKTPT--VLILGGKDKGNDYTPIKELVKKKCRGLV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN +  D          G+P   +  +  + +    EM    D +++
Sbjct: 372 YLGADNKKLHDNFD-----ALGLP-VKDTHSMKDCVEACHEMAKSGDTVLL 416


>gi|322372684|ref|ZP_08047220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
 gi|321277726|gb|EFX54795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
          Length = 450

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 147/416 (35%), Gaps = 55/416 (13%)

Query: 61  PQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----------FASR 108
            QA+  +G + +       L D +  +    P +  DN     +L            A  
Sbjct: 49  AQALLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNPMVARALEKGIPVWTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + +  +    G S    G    I   A +   +  +  
Sbjct: 109 VSE---APIIGITGSNGKTTTTTMIADVLNHGGKSGVLSG---NIGFPASEVAQSVTAQD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     G                 +D         TNL   HIDYH + +AY  
Sbjct: 163 TLVMELSSFQLMG-----------------IDSFHPHIAVITNLMPTHIDYHGSFEAYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +  +   I+  +   +KE+  +         +V  +       +   ++ K
Sbjct: 206 AKWNI-QNRMTSDDFIILNFNQDLAKELATKTKAQVVPFSTV--EKVDGAYLENGGLYYK 262

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++ +  +         +PG   V NAL    +    GI +  + E L     V  R +F
Sbjct: 263 GELIMKAD------EIGVPGSHNVENALATIAVSKLSGISNQAIKETLASFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T     + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VDT-INDVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDITGV 372

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + I+ +  PR +     RA    G+  +++  +  +A R A +  +  DV+++
Sbjct: 373 KK-MIILGESAPRVK-----RAAEKAGV-SYLDAKDVADATRIAFDQASAGDVVLL 421


>gi|298377157|ref|ZP_06987111.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
 gi|298266141|gb|EFI07800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
          Length = 445

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 123/362 (33%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G     +G    + +        
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAG---VDVGLAGNVGN-------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++        +E SS  LD   +   +       N+  DH+D +   
Sbjct: 141 --------SLALQVAEDPHAVYVIELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYE 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +     ++      D   ++E+ KR   A     +  Y+       + 
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETYENGVKGYTEN 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +  +   T++        L  L G   +YN+L +      + I    +   L     V
Sbjct: 251 NQVVIE---TVNGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGV 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A   NS    L+++ T      +V+   G D+      I 
Sbjct: 308 EHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTT-----PVVLILGGTDKGNDYSEIE 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +  +  +  DN       K+ A     +    +  +  EA+  A +M +K D +
Sbjct: 363 ELVNKKVHSLIFMGVDNT------KLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|251772195|gb|EES52765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 467

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 132/397 (33%), Gaps = 58/397 (14%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR I +G +FVA+ G + DGH  + QA A+G    VV               N P +V
Sbjct: 34  TDSRTILSGNVFVALRGLRTDGHDHLEQAAARGTTLAVVERGIP--------GVNIPQIV 85

Query: 95  VDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC------QRSGLSSF 145
           V++T   L    + +   H      ++++TG+ GK++    ++           SG  + 
Sbjct: 86  VEDTLVALRKMGALVLAAHRRAGHRLISLTGSVGKTTTRELIRTGLPPGASHGSSGNENN 145

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +IG   T+ S+    R                         V   + G        +   
Sbjct: 146 EIGVPLTLLSWPPSARWCVLE--------------------VGIRNPGDMDILAPLLSAD 185

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  T +   H++   T +  +  K +L   ++ +    I+  +   ++       +   
Sbjct: 186 TGLVTAVAPVHLETLGTLEGVWKEKSKLLRGVV-EGGCRIVPEEIRRTEGRDPLFSDPTR 244

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R+L V                +     +S EGK    L   P    +     A G C  +
Sbjct: 245 RLLGVSL--------DRFPEADVSGELLSPEGKAVLSLRRPPLRLPLPWPSRALGWCALM 296

Query: 326 --------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI- 376
                   G+D A   E +       GR E    +S    +   Y     S+    + + 
Sbjct: 297 ALAALAAEGVDLASAAERISLYRGYSGRMERRSHSSGLLLLLDHYNANPASMSEAFEWLS 356

Query: 377 --RTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLA 410
             R I  G     V G   +  +G +    +I    A
Sbjct: 357 RERGIRQGARAYAVLGDMLELGEGSQGFHREIGERAA 393


>gi|284991684|ref|YP_003410238.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
 gi|284064929|gb|ADB75867.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
          Length = 489

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 93/423 (21%), Positives = 147/423 (34%), Gaps = 65/423 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS+A    +          + V+       ++ A        +  +AV GT GK+
Sbjct: 79  ADTVVVSTAIREDNPELAAARERGLRVLPRAVALAAVMAG-------KRSVAVAGTHGKT 131

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S  S +    Q  G   SF IG                     L ++ S   + G     
Sbjct: 132 STTSMLTVAVQACGVDPSFAIG-------------------GDLNESGSNAHAGGGDVFV 172

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA         L          TN+  DH+D +    A   A  R F + L      ++
Sbjct: 173 AEADESDRSFLLLA---PHGAIVTNVEADHLDNYGDLAAVEAAFDR-FLQTLDPAGFVVL 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
            ADD  S  +  R      RV + G  +   + L  V         T  ++G        
Sbjct: 229 CADDPGSARL--RTVPTPARVRTYGTAEDSDLRLVDVEVGPETTAWTAVLDGDVLGRVPI 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PGE    N+  A    + +G+ +  ++  L +   V  RFE  GT   G R+Y DYAH
Sbjct: 287 RVPGEHMARNSAAALLAGLELGLPAEGLISGLGRFGGVHRRFELKGTVG-GVRVYDDYAH 345

Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +E  L+  R +   GR++V F         +       AL LAD  +V D     E
Sbjct: 346 HPTEVEAQLRAARAVAGTGRVVVAFQPHLYSRTREFAAAFGTALGLADEVVVMDVYGARE 405

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-----------------NKQDVLVVAG 466
           DP       + G+ G +      +A+    E +                    D+++  G
Sbjct: 406 DP-------VPGVTGAMV----ADAVALPAERVHFEPSWSAAAPALADRAGPGDLVITMG 454

Query: 467 KGH 469
            G+
Sbjct: 455 AGN 457


>gi|150009088|ref|YP_001303831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937512|gb|ABR44209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
          Length = 445

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 123/365 (33%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G     +G    + +        
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAG---VDVGLAGNVGN-------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++        +E SS  LD   +   K       N+  DH+D +   
Sbjct: 141 --------SLALQVAEDPHAVYVIELSSFQLDN--MYDFKADIAIILNITPDHLDRYNYE 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +     ++      D   ++E+ KR   A     +  ++       + 
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHENGMKGYTEN 250

Query: 283 CAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                  QV I      F     L  L G   +YN+L +      + I    +   L   
Sbjct: 251 N------QVVIETANGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDF 304

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V        I    A   NS    L+++ T      +V+   G D+     
Sbjct: 305 TGVEHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTT-----PVVLILGGTDKGNDYS 359

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            I   ++  +  +  +  DN       K+ A     +    +  +  EA+  A +M +K 
Sbjct: 360 EIEELVSKKVHSLIFMGVDNT------KLHAFFDGKVANIEDARSMEEAVAKAYKMAHKG 413

Query: 460 DVLVV 464
           D +++
Sbjct: 414 DTVLL 418


>gi|325846778|ref|ZP_08169693.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481536|gb|EGC84577.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 463

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 141/409 (34%), Gaps = 42/409 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGKSSV 129
           ++ + A S  +       +  + VV  TR  FL            +N +AV+G+ GKS+ 
Sbjct: 74  VIYTDAISDNNEELIAARSLGVPVV--TRGVFLGGLMKNY-----KNSIAVSGSHGKSTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I   S  +     PT  +     +                 L ++   +     
Sbjct: 127 TSMISKILMNSTKN-----PTILLGGDLDEIEGNVHVGDE-----EILVTEACEYKGNIR 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +              G   N+  DH+DY++          + + +   + S  I+  +
Sbjct: 177 YYY-----------PSIGIILNIDEDHLDYYKDLNDIIET-FKSYLKNQDENSKTILNLN 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPG 308
           +  +K V+                  +           K +  + + +G    F   + G
Sbjct: 225 EENNKLVIDSVQGELITYGQENPDADYNATNITFDEDGKPRFDLIMKDGSTEHFELSILG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA  A    +  G+D   +   ++    +  R + +G N  G +I +DY H  + 
Sbjct: 285 RHNINNACAAIISTLESGVDIETIKNSIQSYKGLERRMQLLG-NIDGCKIILDYGHHPSE 343

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPE 426
           +++ L  +   T GR+I V+         +         D AD  I+TD     E  DP 
Sbjct: 344 IQVNLSALAEHTKGRLICVWQPHTYTRTKRLFNEFVNCFDDADEVIITDIFAAREPFDPS 403

Query: 427 KIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               +I+  +        ++   ++++     +  + + D ++V G G 
Sbjct: 404 ISSKDIVDALVEKGKSAKYLPTFDQVK--EYVLSDIKENDQVIVTGSGD 450


>gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
          Length = 846

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 130/386 (33%), Gaps = 38/386 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    M   +  I+ + +DSR +      +F A+   +  G  +IP+   +G 
Sbjct: 5   IESIAKSIGARRMGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN-----------------TPILVVDNTRKFLSLFASRLY 110
              ++    + L +                            L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  ++ 
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLS--------PDRCIVRSPRSYNSQIGVPLSVW- 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS  +  G+    +          R+  IK   G  TN+G  H +   + Q     K
Sbjct: 176 --QLSEEAELGIFEAGISEMGEMGALKRM--IKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           + LF++        I   D+   S  V K    A     S     + +++ +V    +  
Sbjct: 232 LTLFKDC----DVVIYNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHT 287

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++      D  F  P   +  + N L     C+ +   +  + E + +L  +  R E  
Sbjct: 288 VISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVK 347

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKN 375
              +    I   Y     SL++ L  
Sbjct: 348 EGKNNCVLINDSYNSDLASLDIALDF 373


>gi|260171780|ref|ZP_05758192.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. D2]
 gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 846

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 130/386 (33%), Gaps = 38/386 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    M   +  I+ + +DSR +      +F A+   +  G  +IP+   +G 
Sbjct: 5   IESIAKSIGARRMGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN-----------------TPILVVDNTRKFLSLFASRLY 110
              ++    + L +                            L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  ++ 
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLS--------PDRCIVRSPRSYNSQIGVPLSVW- 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS  +  G+    +          R+  IK   G  TN+G  H +   + Q     K
Sbjct: 176 --QLSEEAELGIFEAGISEMGEMGALKRM--IKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           + LF++        I   D+   S  V K    A     S     + +++ +V    +  
Sbjct: 232 LTLFKDC----DVVIYNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHT 287

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++      D  F  P   +  + N L     C+ +   +  + E + +L  +  R E  
Sbjct: 288 VISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVK 347

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKN 375
              +    I   Y     SL++ L  
Sbjct: 348 EGKNNCVLINDSYNSDLASLDIALDF 373


>gi|260896399|ref|ZP_05904895.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           Peru-466]
 gi|308087557|gb|EFO37252.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           Peru-466]
          Length = 398

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 133/378 (35%), Gaps = 49/378 (12%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R +  G  +F+        GH      + + A  +VVS+A + ++          I +V 
Sbjct: 62  RLVSKGATVFI--------GHQ--ASNVEK-ASVVVVSTAINEENPEVMAARELRIPIVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   +GL    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK- 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+    
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSDDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++       + + T+  +G+ + D    +PG     NA  A  +     I+   +L+
Sbjct: 260 DVRIENYHQEGQQGKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILK 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RF+ +G   T +    +  DY H    +++ +K  R+     R++++F  
Sbjct: 320 AMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTIKAARSGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALD 408
                           L 
Sbjct: 380 HRYSRTRDLYDDFATCLS 397


>gi|229047597|ref|ZP_04193187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
 gi|228723844|gb|EEL75199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
          Length = 450

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  I V          LP
Sbjct: 224 ADDADVMALSAYSKGQKI-LFSTTKENEDGACIKDNALYFKGEKVIEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|110680536|ref|YP_683543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
 gi|118595688|sp|Q163I6|MURD_ROSDO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|109456652|gb|ABG32857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
          Length = 464

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 135/407 (33%), Gaps = 47/407 (11%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
             ++VS      Y   +    +     + V ++   F   FA+  +        ++AVTG
Sbjct: 68  ACLIVSPGIPHLYPAPNPVVRLALQAGVPVDNDIGLFFRSFATNAWANFDTAPRVVAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ ++ +  I +  G  +   G                         L        
Sbjct: 128 SNGKSTTSALIHHILEHVGRPATLAGNIG-------------------RGVLDIDPPHDG 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 169 EVVVLELSSYQTDLAR--SLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRRLFAEGGPDRA 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VEGK 298
              +  D+            A  RV+ + +  K                       +   
Sbjct: 227 IVGVDEDEGLFLAGQLAEGRADDRVIRISFAQKLTGPGWQVFARKGFLSEYRKGKQIASV 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D   +  LPG     NA  A  +C ++G+   ++   L     +P R + VG    G R 
Sbjct: 287 DLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKVIEAALHSFQGLPHRSQLVGQK-DGVRF 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             D    + + +   K +    S R I     G ++D G   +    A  +    I   +
Sbjct: 346 VNDSK--ATNADAAAKALAAFPSIRWIC---GGLEKDGGMDALRNASASVVKAYVI-GRE 399

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                    + AEI   +          +A+  A       DV+++A
Sbjct: 400 AAAFAMKLPVEAEICTTM---------AQAVEKAAREAEAGDVVLLA 437


>gi|237739356|ref|ZP_04569837.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31]
 gi|229422964|gb|EEO38011.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31]
          Length = 463

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 131/372 (35%), Gaps = 44/372 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++ S+A    +          I ++    + L+   +R  G      +A+ GT G
Sbjct: 59  KGADYVIASTAIKETNPEYAYAKENGIKILKRG-ELLAKLLNRETG------IAIAGTHG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +  +   +    G    I S A+  +            ++       + +
Sbjct: 112 KTTTSSMLSAVMLKKDPTIVVGGILPEIKSNARPGKSEY--------FIAEADESDNSFL 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H         K    E +L  +  +I
Sbjct: 164 FM---------------NPEYSVITNIDADHLDVHGNLDNI---KKSFIEFILHTQKESI 205

Query: 246 IYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D       ++K          S+  +   I+ K +  +  K    + V  +   +F 
Sbjct: 206 ICMDSKNLMDAILKLPEGKSVTTYSIKDENADIYAKNIRIVDRKTIFEVYVNKELKGEFS 265

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L +  G++   + E L +      R++ +         G+ ++
Sbjct: 266 LNIPGEHNIQNSLPVIYLALKFGLNKDEIQEALNQFKGSKRRYDVLYDQELENGYGSKTK 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I+++ S R++ +F               K A    D  I
Sbjct: 326 RVRIVDDYAHHPTEIKATLKAIKSVDSSRLVAIFQPHRYSRVHFLLDEFKDAFADVDKVI 385

Query: 415 VTDDNPRSEDPE 426
           +       E  E
Sbjct: 386 LLPIYAAGEKNE 397


>gi|327473405|gb|EGF18825.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK408]
          Length = 459

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 139/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q+    G +    G    I   A     T  S
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASS 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G                 ++         TNL   H+DYH + + Y
Sbjct: 170 KDMLVMELSSFQLMG-----------------IEDFHPQIAVITNLMPTHLDYHGSVEEY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +         +          K   A  
Sbjct: 213 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQATVVPFSTTE--------KVDGAYL 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 264 EGDVLTFRGEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGQVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA    G+  +++  +  +A   A       D++++
Sbjct: 380 G-LKKMVILGQSAARVK-----RAADQAGV-SYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|33592809|ref|NP_880453.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|33572457|emb|CAE42026.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|332382222|gb|AEE67069.1| cyanophycin synthetase [Bordetella pertussis CS]
          Length = 857

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 140/386 (36%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA R  G+ P  ++AV GT+GK++       I   +G     +G T++   +    R+ 
Sbjct: 461 MFAERDDGRIP--VVAVAGTNGKTTTVRLTAHILDCAGHR---VGMTNSDGVYVGKQRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDH--IDYH 220
           T        A   L    V    +E +  G+ +  L   +      TN+G  DH  + Y 
Sbjct: 516 TGDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHFGLGYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM------------KRAHNAGCRVL 268
            T +     K  + + + P +  A++ A D    E+              R H       
Sbjct: 576 STVEDLAVVKRVIVQYVQP-DGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHR 634

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G++  +     + A     +V  ++   D          FQV N + A     A+GID
Sbjct: 635 AQGHRVVYRDGDSLVAAQGGAEVAFALA--DIPLTRGGAIAFQVENTMAALAAAWALGID 692

Query: 329 SALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              +   L             F   + RG  +  DY H  ++++ +++ I T+ + R  V
Sbjct: 693 WDTIRHALAIFVNDAQTAPGRFNVFDFRGATLIADYGHNPDAIQALVRAIDTMPARRRSV 752

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPG------F 439
           V    GDR         +I     D  I+  D   R     ++ A +  G+         
Sbjct: 753 VISGAGDRRDEDLRQQTEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHI 812

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVA 465
            E      AI  A+E L   D+ ++ 
Sbjct: 813 DEIQGEFVAIDAALERLAPGDLCLIL 838


>gi|299142299|ref|ZP_07035432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
 gi|298576388|gb|EFI48261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
          Length = 443

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 139/379 (36%), Gaps = 38/379 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G   + +G    I                     
Sbjct: 102 SKMVCITGSNGKTTTTSLIYHIFKSAG---YDVGLAGNIG----------------KSLA 142

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             ++     +  +E SS  L  + +   +       N+  DH+D +    + Y +AKMR+
Sbjct: 143 LQVAEDPHEYYVIELSSFQL--NNMYDFRANIAILLNITPDHLDRYDFKFENYADAKMRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +   P++S      D    KE+ K    A     S   +   I   +      +     
Sbjct: 201 IQNQTPEDSFIYWNDDPVIKKELEKFEIKAYACPFSELKEKGSIGYIEAGTYKLEYPTPF 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++E +       L G+  +YN+L A       GI   ++ + L     V  R E V    
Sbjct: 261 NMEQEA----LSLTGKHNIYNSLAAGLASNIAGIKKEIIRKSLSDFPGVEHRLEKVC--K 314

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            GG  Y++ +  +N ++     + ++ +    V+   G D+     PI   +      + 
Sbjct: 315 VGGVQYINDSKATN-VDACWYALESMKTPT--VLILGGKDKGNDYTPIKELVKKKCRGLV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            +  DN       K+            +  +  + +    EM    D ++++     +  
Sbjct: 372 YLGADN------RKLHDNFDALDLPVKDTHSMKDCVEACHEMAKSGDTVLLS-PCCASFD 424

Query: 474 IVTNGEKKMSVDCDIIREI 492
           +  N E++ ++  D++RE+
Sbjct: 425 LFHNMEERGNMFKDLVREL 443


>gi|315181129|gb|ADT88043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio furnissii NCTC 11218]
          Length = 486

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 142/428 (33%), Gaps = 50/428 (11%)

Query: 65  AQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHP 114
            +GA   +  SA      S+   S  I    P +     ++        + A  +  +H 
Sbjct: 65  DKGATVYIGHSASNVAQASVVVVSTAINEENPEIKAAREKRIPVVRRAEMLAELMRFRHG 124

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + V QI   +GL    +      S+       ++         +
Sbjct: 125 ---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RILI 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +A   TN+  DH+D +             F
Sbjct: 176 AEADESDASFL---------------HLQPMATIVTNIEADHMDTYGGDFETLKQTFVDF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              LP    AI+  DD   +E++ R       V++ G+ +   + ++       + + T+
Sbjct: 221 LHNLPFYGQAILCVDDPVVRELIPRISR---HVITYGFSEDADVRIENYRQEGQQGKFTV 277

Query: 294 SVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
             +G+ + D    +PG     NA  A  +     I   ++L  +        RF+ +G  
Sbjct: 278 VRQGRANLDITLNIPGRHNALNASAAIAVATEDDIHDDVILRAMANTQGTGRRFDHLGEF 337

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T +    +  DY H    + + +   R      R++++F                  L+
Sbjct: 338 DTGNGDVMLVDDYGHHPTEVGVTIAAARNGWADKRLVMIFQPHRYTRTRDLYDDFANVLE 397

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D+ ++ D     E P        +   I   G    I   +          +L   D+
Sbjct: 398 QVDVLLMLDVYSAGEKPIAGADGRSLCRTIRSRGKLDPIFVPDSKTLPSVLANVLQDGDL 457

Query: 462 LVVAGKGH 469
           ++  G G 
Sbjct: 458 VLTQGAGD 465


>gi|283456395|ref|YP_003360959.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium dentium Bd1]
 gi|283103029|gb|ADB10135.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium dentium Bd1]
          Length = 521

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 125/437 (28%), Gaps = 58/437 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SSA    +            +V  +   L+L          +  + V G  GK
Sbjct: 88  GARTVVFSSAIKPDNPEIVAAYEAGERIVHRS-DILALLM------QSKRAVTVAGAHGK 140

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S +  I   +G             S+A    +       L    +   S  V    
Sbjct: 141 TTTSSMLAHILVNAGEGE------LADPSYAIGGSIQGKDGATLDGGHAGKGSVLVAEAD 194

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S                  TN   DH+D++ T+  Y  A     E         I+
Sbjct: 195 ESDGSFA-------KYHPEIAIITNAEADHLDHYGTEAKYRAA---FVEHAGCAGKAVIM 244

Query: 247 YADDAYSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVT----------- 292
             DD  +  V++       R   V S         L     +  + +             
Sbjct: 245 CGDDDGALAVLRALKTEVARHVVVYSTQPSEDLGDLNGAAHVRIESESESTQSGAEHFIL 304

Query: 293 ------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 + VE +       +PG     NA  A    + +G+D                RF
Sbjct: 305 HLPAGLVDVEERRVPVTLTVPGIHNARNATAALLAAVMLGVDVERAAAAATSFLGAARRF 364

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +  G+ ++   +  DYAH    +  +L    R      I V+F                 
Sbjct: 365 QIRGSVNQ-VTVIDDYAHHPTEIAALLDAARRRYPEAGIHVIFQPHLFSRTMFFAREFAE 423

Query: 406 ALDLADIAIVTDDNPRSED--------PEKIRAEIIHGIPGFIE-----KGNRIEAIRTA 452
           AL  AD  IVT   P  E         P+ I  E +       +       +   A +  
Sbjct: 424 ALAKADDVIVTGIFPAREKQEDFPTVSPDTIVNEAVKLEHEPADDWIRGVDDMRTAAQMM 483

Query: 453 IEMLNKQDVLVVAGKGH 469
           +   +  DV+   G G 
Sbjct: 484 VMRAHHGDVIFTVGAGD 500


>gi|88799422|ref|ZP_01114999.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
 gi|88777732|gb|EAR08930.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
          Length = 480

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 132/408 (32%), Gaps = 46/408 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A +  +       +  + VV    + L+      +G      +A+ GT GK++  S +  
Sbjct: 86  AINPDNVEVAWALDARVPVVRRA-EMLAELMRYRHG------IAIAGTHGKTTTTSLMTA 138

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +  R      +  PT  I                    ++       + +          
Sbjct: 139 VMGR-----GEYDPTFIIGGRLNSAGSNARLGTSRY-LIAEADESDASFL---------- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 ++ +    TN+  DH++ +             F   +P     ++  DD   + 
Sbjct: 183 -----HLQPMTAIVTNIDADHMETYCGDFERLKQTYVEFLHNVPFYGLVVLCTDDDNVRS 237

Query: 256 VMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVY 313
           ++    +   +V+S G+     +    +     +   T+   G         +PG+  V 
Sbjct: 238 IL---PSIQRQVMSYGFNDTADVRAIDIEKKGLQTNFTVLRSGLPSLKIELKMPGDHNVL 294

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLE 370
           NAL    +    G+    +++ L     V  RF+  G   T      +  DY H    L+
Sbjct: 295 NALAVIAVATDEGVPDHEIVKGLNGFDGVGRRFQVNGEFSTPKGDVLLVDDYGHHPRELQ 354

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP---- 425
           +    IRT     R++ +F                  L   D+ ++ D  P  E+P    
Sbjct: 355 VTFDAIRTGWPERRLVALFQPHRYSRTRDLYEDFVDVLSKVDVLLLLDVYPAGEEPINGA 414

Query: 426 --EKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
               +   I   G    +   +  ++I + + ++L   D+L+  G G 
Sbjct: 415 DGRSLCRSIRQRGRVDPVFIED-KDSIFSVLPDVLQDGDILLTQGAGD 461


>gi|326775888|ref|ZP_08235153.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656221|gb|EGE41067.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 466

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/432 (19%), Positives = 146/432 (33%), Gaps = 44/432 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A  +VVSSA    +          + VV  +    SL     
Sbjct: 54  GATVHIGH--AAGHLADDASCVVVSSAIRADNPELLRAGELAVPVVHRSDALASLM---- 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    +AV GT GK++  S +       G   S+ IG               T    
Sbjct: 108 ---NGLRAIAVAGTHGKTTTTSMLAVALSSLGLAPSYAIG-----GDLEGPGTNATHGEG 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +  A +  S +                              N+  DH   + +    ++
Sbjct: 160 DIFVAEADESDRSFQKY-----------------DPEVAIVLNVELDHHANYASMDEIYD 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVGY-QGKFIHLKKVCAIH 286
           +    F   +      ++ AD   + E+ +R  + +  +V++ G  +   + + KV    
Sbjct: 203 S-FETFVGKVVPGGTLVVSADQPGAVELTRRVRDLSDLKVVTYGCAEDADVRVHKVTPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+ + GK   F   +PG    +NA+ A    +A+GI +  +   L     V  R 
Sbjct: 262 LTSEVTVLLNGKFLTFTVSVPGAHYAHNAVAALAAGVALGIPAHNLASALGSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +  G  + G ++   YAH    +   L+ +R      RI+VVF         +       
Sbjct: 322 QLKGEAA-GVQVIDSYAHHPTEMTADLEAMRGAAADARILVVFQPHLFSRTQELGTEMGQ 380

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           AL LAD ++V D  P  EDP        I               ++ +       M    
Sbjct: 381 ALALADASVVLDIYPAREDPIPGITSALIIDAAKEAGAEVTAVHDQADVPAAVAGMAKSG 440

Query: 460 DVLVVAGKGHET 471
           D+++  G G  T
Sbjct: 441 DLVLTMGAGDVT 452


>gi|291557015|emb|CBL34132.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           V10Sc8a]
          Length = 511

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 114/309 (36%), Gaps = 23/309 (7%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G     ++ +TG+ GK+S   +++++           G    +    +    T      
Sbjct: 163 NGLPDLTVVGLTGSYGKTSTKFYLEKLL----------GAKYNVLMTPESYNTTMGVVKV 212

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +   L+  ++  +    + A + G  +   D +K   G  T++G  H++  ++       
Sbjct: 213 VRGQLN--ATHEIFLCEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKT 270

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  L + L  K+    +  D+ Y   + K   N      S+G  G   +   +    N  
Sbjct: 271 KFELADSLPDKDGIIFLNYDNEY---IAKHECNKNKVTYSLG-GGTDYYADNISVSENGT 326

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q T+    ++  F   L G   V N + A  +   +G+  A ++  +++L  VP R + +
Sbjct: 327 QFTVHNGNEEKQFTTKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECVPHRLQII 386

Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKI 405
              ++   I  D +       +  L  +     G  I+V        +++       G+ 
Sbjct: 387 KGTNK--TIIDDAFNSNPTGAKAALDTLAVF-EGFKILVSPGMVELGEKEYELNKRFGEQ 443

Query: 406 ALDLADIAI 414
           A ++ D  I
Sbjct: 444 AAEICDFVI 452


>gi|256841648|ref|ZP_05547154.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
 gi|256736542|gb|EEU49870.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
          Length = 445

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 120/365 (32%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G     +G    + +        
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAG---VDVGLAGNVGN-------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++        +E SS  LD   +   +       N+  DH+D +   
Sbjct: 141 --------SLALQVAEDPHAVYVIELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYE 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +     ++      D   ++E+ KR   A              H   V
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPF------AETHENGV 244

Query: 283 CAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                  QV I      F     L  L G   +YN+L +      + I    +   L   
Sbjct: 245 KGYTENNQVVIETANGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDF 304

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V        I    A   NS    L+++ T      +V+   G D+     
Sbjct: 305 TGVEHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTT-----PVVLILGGTDKGNDYS 359

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            I   +   +  +  +  DN       K+ A     +    +  +  EA+  A +M +K 
Sbjct: 360 EIEELVNKKVHSLIFMGVDNT------KLHAFFDGKVANIEDARSMEEAVAKAYKMAHKG 413

Query: 460 DVLVV 464
           D +++
Sbjct: 414 DTVLL 418


>gi|229031544|ref|ZP_04187544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
 gi|228729833|gb|EEL80813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
          Length = 450

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 142/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A+  K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKENALCFKGEKVVEVGD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   ++Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKVYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALAAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|194337859|ref|YP_002019653.1| UDP-N-acetylmuramate/alanine ligase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|229620054|sp|B4SH48|MURC_PELPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194310336|gb|ACF45036.1| UDP-N-acetylmuramate/alanine ligase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 479

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 143/428 (33%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           GH    Q    G++ +V SSA   +D     A  ++  P++  D   + L       YG 
Sbjct: 57  GHR-AEQV--AGSDVVVYSSAIRAEDNIELIAAEKAGIPVIKRD---EMLGELMRYTYG- 109

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                + + GT GK++  + +  +   S  S   +     IS + + + +       + +
Sbjct: 110 -----ICIAGTHGKTTTTAMIATMLIESDESPTVM--IGGISDYLKGSTVVGEGKYMVIE 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +                      +        +L  +H+D + T      A   
Sbjct: 163 ADEYDRAF-------------------LKLTPTIAVVNSLESEHMDTYGTLDELKEA-FV 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   +P     I   D    +++M +  N  C    +      +    +   +     +
Sbjct: 203 AFANKVPFYGRVICCVDWPEIRKIMPKM-NRLCTTFGIDEPADVMAF-DIVLDNQHTTFS 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I   G+++ D    +PG   V NAL A    + +GI    ++  L +   +  RF+    
Sbjct: 261 IKAFGQEYRDVSLQVPGRHNVLNALAAFSTGLELGILPERLIAGLGRYSGMRRRFQVKYD 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLA 410
           N  G  +  DYAH    ++  ++  ++      IV VF         +       AL  A
Sbjct: 321 NGHGLMVVDDYAHHPTEVKATVRAAKSGWRDSRIVAVFQPHLFSRTREFAHEYGWALSHA 380

Query: 411 DIAIVTDDNPRSE--------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDV 461
           D+  V D  P  E        D E I   +       +E   +         E     ++
Sbjct: 381 DMVYVADIYPAREKGVDYPGVDGELIADAVRKAGGKHVEFVADMQNLFTALKEWSVNGNM 440

Query: 462 LVVAGKGH 469
           L+  G G 
Sbjct: 441 LLFMGAGD 448


>gi|34540830|ref|NP_905309.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis W83]
 gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           gingivalis W83]
          Length = 823

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 150/420 (35%), Gaps = 41/420 (9%)

Query: 11  FPELINQLSIFPMQ-WRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQG 67
           F EL  +LS   ++   + +I  + +DSR +      +F A+     DGHL+I     +G
Sbjct: 4   FSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLYDRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPIL---VVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             + V+S      D S  +    P      V +    L   A+         ++ +TG++
Sbjct: 64  VRSFVIS------DPSKDLMEKMPQANWMRVAHPLDALQRIAALRRSMFDIPVIGITGSN 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+ V  F+ Q+ ++                    +  +  S I +  ++  ++ +    
Sbjct: 118 GKTIVKEFLYQLLRK--------------DYRIVRSPRSYNSQIGVPLSVWQMAEEHTLG 163

Query: 185 VSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +     S   +  RL+  I    G  TN+G  H +     +     K+RLF         
Sbjct: 164 IFEAGISQMGEMERLESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLFLHC----HT 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            +   D       +     A   V  S       +++ ++ +  N+ ++     GKD+  
Sbjct: 220 IVYNGDCEEIAAAISFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSL 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
           + P      + + +    L   +  +     +    L  V  R E V     G  I  D 
Sbjct: 280 VLPFTDAASIEDIIHCITLISVLCPEVLSARKRFAGLEPVEMRME-VKAGDHGNTIINDV 338

Query: 362 YAHTSNSLEMILKNIRTIT-----SGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           Y++   SL + L   R  T        +I+  +   G   ++  R + G++ +   D  +
Sbjct: 339 YSNDVYSLTLALDFQRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFV 398


>gi|18311428|ref|NP_563362.1| hypothetical protein CPE2446 [Clostridium perfringens str. 13]
 gi|18146112|dbj|BAB82152.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 553

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 140/372 (37%), Gaps = 32/372 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK+S +  + +  +  G   +  G   T      +  +          A  
Sbjct: 157 PIVSITGTNGKTSTSRLIYKGFENLG---YFSGLAMTGGIIINNEFVKKGDTTGFYSAKK 213

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+  
Sbjct: 214 VLTNPQVEVEVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLIT 273

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN----------AGCRVLSVGYQGKFIHLKKVC 283
             E+LP+     I   +    EV++   N             + +  G +  F+  + V 
Sbjct: 274 TREVLPEGKV--IIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVI 331

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
               K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +    
Sbjct: 332 FFDGKDKNIIS-NIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDV 390

Query: 342 --VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR   +   +   +I +DY H   + E +      I   +II +    GDR     
Sbjct: 391 YNNIGRQNIIELEN--FKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYI 448

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRT 451
             +G+IA   +D  I+ +  + R  +  +I   I  GI     K        +  EAI+ 
Sbjct: 449 KELGRIAGKNSDTIIIKETFDRRGREELEITNLIKSGINEIKNKSVEVLSIIDEEEAIKK 508

Query: 452 AIEMLNKQDVLV 463
           AI M  + D++V
Sbjct: 509 AISMAKEGDIIV 520


>gi|221638509|ref|YP_002524771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159290|gb|ACM00270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase precursor
           [Rhodobacter sphaeroides KD131]
          Length = 477

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 162/464 (34%), Gaps = 58/464 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +FVA+  ++ DGH F+ +A+A+GA A +VS           +  + 
Sbjct: 25  TGVSIDTRSLGPGDLFVALT-DQRDGHAFVAEALARGAAAALVSR------CPEGLPEDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++ VTG+ GK+S    ++             G  
Sbjct: 78  PLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKTSTKEMLRATL----------GGQ 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+ +           P+ LA+  + +       V +  +  G         +      T
Sbjct: 128 GTVHAAEASYNNHWGVPLTLARMPADV---DFAVVEIGMNHPGEIAPLSRLARPHLALIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++   +  A    K  + E L P    AI+ A    S  +  RA   G   ++ 
Sbjct: 185 TVAAAHLEAFDSLAAIAEEKAAILEGLEP-GGRAILPAGLEVSPVLAARAAALGVPAVTF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L  +           S  G  F F    PG     NAL       A+G+D 
Sbjct: 244 GQSADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATLAAAEALGLDL 303

Query: 330 ALVLEHL-----EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-- 381
            +    L             R      +  G  +  D +     S+   L+ +  +    
Sbjct: 304 TIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASLELLAAMAPTD 363

Query: 382 -------GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEI 432
                  GR I + G   +    +  +   +A     A+IA+V    PR           
Sbjct: 364 GVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR----------- 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIE-------MLNKQDVLVVAG-KG 468
           +  +   + +  R E + TA E       +++  D+++V G KG
Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|163856170|ref|YP_001630468.1| cyanophycin synthetase [Bordetella petrii DSM 12804]
 gi|163259898|emb|CAP42199.1| cyanophycin synthetase [Bordetella petrii]
          Length = 857

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 150/391 (38%), Gaps = 36/391 (9%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             S+FA    G+ P  ++AV GT+GK++       +   SGL    +G T++   +    
Sbjct: 459 IASMFAEGDDGRIP--VVAVAGTNGKTTTVRLTTHLLAGSGLR---VGMTNSDGVYIGAR 513

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID- 218
            + +        A   L+  GV     E +  G+ +  L   +      TNLG  DH+  
Sbjct: 514 SIDSGDCSGPRSARRVLAHPGVDAAVFETARGGILREGLAFDRCDVAIVTNLGMGDHLGL 573

Query: 219 -YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------------AHNAGC 265
            Y  T +     K R+  + +     A++ A D    ++               AH    
Sbjct: 574 GYISTVEDLAVVK-RVIVQYVHAGGTAVLNATDPIVADMASACPGSVTFFSSDPAHPLIG 632

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G++  +     + A     +V I++   D          FQV NA+ A     ++
Sbjct: 633 THRAQGHRVVYRDGPDIVAAQGDAEVRIALA--DIPLTHGGAIAFQVDNAMAAVAAAWSL 690

Query: 326 GIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           G+D  ++ + L         VPGRF     + RG  +  DY H  ++++ +++ +  + +
Sbjct: 691 GVDWPVIRQGLAGFISDAQTVPGRFNMF--DYRGATVIADYGHNPDAIQALVQAVEALPA 748

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFI 440
            R  VV    GDR         +I  D  D  ++ +D   R     ++   +  G+ G  
Sbjct: 749 RRRSVVISGAGDRRDDDLRRQTEILGDAFDDVVLYEDQCQRGRADGEVLTLLRQGLAGAQ 808

Query: 441 EKGNRIE------AIRTAIEMLNKQDVLVVA 465
              +  E      AI TA+  L   D+ +V 
Sbjct: 809 RARHVEEIRGEFLAIDTALARLEAGDLCLVL 839


>gi|262383988|ref|ZP_06077124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
 gi|262294886|gb|EEY82818.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
          Length = 445

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 120/365 (32%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G     +G    + +        
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAG---VDVGLAGNVGN-------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++        +E SS  LD   +   +       N+  DH+D +   
Sbjct: 141 --------SLALQVAEDPHAVYVIELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYE 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +     ++      D   ++E+ KR   A              H   V
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPF------AETHENGV 244

Query: 283 CAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                  QV I      F     L  L G   +YN+L +      + I    +   L   
Sbjct: 245 KGYTENNQVVIETANGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDF 304

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V        I    A   NS    L+++ T      +V+   G D+     
Sbjct: 305 TGVEHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTT-----PVVLILGGTDKGNDYS 359

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            I   +   +  +  +  DN       K+ A     +    +  +  EA+  A +M +K 
Sbjct: 360 EIEELVNKKVHSLIFMGVDNT------KLHAFFDGKVANIEDARSMEEAVAKAYKMAHKG 413

Query: 460 DVLVV 464
           D +++
Sbjct: 414 DTVLL 418


>gi|269122823|ref|YP_003305400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314149|gb|ACZ00523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
          Length = 405

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 84/487 (17%), Positives = 160/487 (32%), Gaps = 100/487 (20%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++LI K    L                  VS +S+      +F AI      G+ +  +
Sbjct: 7   LEELIGKKIFSLKEDFK-------------VSINSKEATPNSVFFAI----NKGNDYAKE 49

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A + GA  I       + +             V+++ KF+  FA R    +   ++ +TG
Sbjct: 50  AESMGAFVIYDKKELDIHNGH----------YVEDSVKFMQEFARRYRKNNKFIVIGITG 99

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++V   +  +    G+  +      T  ++                 LS   S  +
Sbjct: 100 SNGKTTVKDILHSVLSNKGVRVY-----KTQGNYNNHIG-------LPFTILSAKDSDEI 147

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S+ G         K      TN+G+ H++Y +T +  F AK  +         
Sbjct: 148 LLLEMGMSNLGEIDLLGYIAKPDYSIITNIGQSHLEYLKTMENVFKAKTEIIPH---TSK 204

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++   D +  ++                                    I VE KD   
Sbjct: 205 KVVVNGKDEFLSKL---------------------------------DGVIKVETKD--I 229

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  + N  +   L   +G D        E + +  GRF+ V    +   I   Y
Sbjct: 230 KTNLLGDHNLLNVSIVDSLLKYMGFDDLCY----ENIELTDGRFQIV--KGKYTYINDAY 283

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV-----FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             +  S++  L+    I +    ++        G D  +    +   +     D   +  
Sbjct: 284 NASPISMKASLETFSKICNESFKIIALGDMLELGSDEKKYHEDLSYVLRETNFDRLFLYG 343

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN--KQDVLVVAGKG-----HE 470
              +    EK+    +  I    E  +  E I+ AI+ +   K+ V+++  KG      E
Sbjct: 344 KRMKYL-YEKLCN--LDDISFKFEYFDNKEDIKKAIDNIETIKEKVVLL--KGSRSMKME 398

Query: 471 TVHIVTN 477
            +  V N
Sbjct: 399 DIMEVNN 405


>gi|296122915|ref|YP_003630693.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015255|gb|ADG68494.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
          Length = 896

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 133/359 (37%), Gaps = 33/359 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I ++ G     +G T T   +  D R+ T        A + LS+  V    +E + 
Sbjct: 506 LMAHIFRQQGK---CVGMTCTDGVYIDDRRIDTGDCSGPRSARTVLSNPTVEAAVLETAR 562

Query: 192 HGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYA 248
            G+ +  L   +      TN+G  DH+      T +     K  + E + P +  A++ A
Sbjct: 563 GGILREGLGFDRCHVAIVTNIGEGDHLGMAGIETAEQLGRVKRVIVENVSP-DGHAVLNA 621

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISVEG------ 297
           +D  +   +  A     +V+     G    +K        A++ +Q   I+ EG      
Sbjct: 622 EDPIT---LAMADYCPGKVILFARSGDHPAVKSHLAKGGKAVYTQQNWLIAAEGSWSARV 678

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTN 352
               +    F     FQV N + +     A+GI    +   LE       +    F    
Sbjct: 679 ASLNNVPLTFSGLIGFQVDNTMASMAAAWALGIPFETIRSALETFSSDIRKAPARFNVLE 738

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
           + G  + +DY H S+++  +L  I  +  GR  +V+   G  RD+        IA    +
Sbjct: 739 AAGATLIIDYGHNSSAIVALLDAINQLPHGRRRIVYTAAGDRRDEDIVRQAQLIASGFDE 798

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I I  D   R     ++   +  G      +   +E    + AI   ++ +   D++++
Sbjct: 799 IVIYEDQCTRGRADGEVIRLMRQGLSQGGRLSSILETRGEMVAIEMCLQRMEPGDLVLI 857


>gi|182435249|ref|YP_001822968.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|229620435|sp|B1VWF9|MURC_STRGG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|178463765|dbj|BAG18285.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 466

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 145/432 (33%), Gaps = 44/432 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A  +VVSSA    +          + VV  +    SL     
Sbjct: 54  GATVHIGH--AAGHLADDASCVVVSSAIRADNPELLRAGELAVPVVHRSDALASLM---- 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    +AV GT GK++  S +       G   S+ IG               T    
Sbjct: 108 ---NGLRAIAVAGTHGKTTTTSMLAVALSSLGLAPSYAIG-----GDLEGPGTNATHGEG 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +  A +  S +                              N+  DH   + +    ++
Sbjct: 160 DIFVAEADESDRSFQKY-----------------DPEVAIVLNVELDHHANYASMDEIYD 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVGY-QGKFIHLKKVCAIH 286
           +    F   +      ++ AD   + E+ +R  + +  +V++ G  +   + + KV    
Sbjct: 203 S-FETFVGKIVPGGTLVVSADQPGAVELTRRVRDLSDLKVVTYGCAEDADVRVHKVTPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+ + GK   F   +PG    +NA+ A    +A+GI +  +   L     V  R 
Sbjct: 262 LTSEVTVLLNGKFLTFTVSVPGAHYAHNAVAALAAGVALGIPAHNLASALGSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +  G  + G ++   YAH    +   L+ +R      RI+VVF         +       
Sbjct: 322 QLKGEAA-GVQVIDSYAHHPTEMTADLEAMRGAAADARILVVFQPHLFSRTQELGTEMGQ 380

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           AL  AD ++V D  P  EDP        I               ++ +       M    
Sbjct: 381 ALARADASVVLDIYPAREDPIPGITSALIIDAAKEAGAEVTAVHDQADVPAAVAGMAKSG 440

Query: 460 DVLVVAGKGHET 471
           D+++  G G  T
Sbjct: 441 DLVLTMGAGDVT 452


>gi|295089862|emb|CBK75969.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cf.
           saccharolyticum K10]
          Length = 465

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 92/438 (21%), Positives = 157/438 (35%), Gaps = 54/438 (12%)

Query: 66  QGAEAIVVSSAYSLQD------------FSATIRSNTPILVVDNTRKFLSLFASRLYG-- 111
           +GA   +   A +++             ++A I  + P            L  + L G  
Sbjct: 53  RGAVIYIGQRAENIRQAEQTGKKIDAVVYTAAIHPDNPEFAAAREAGLPMLSRAVLLGEM 112

Query: 112 -KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            ++    +AV+GT GK++  S + +I   +  +   I     + S   + R+  P   ++
Sbjct: 113 MRNYREAIAVSGTHGKTTTTSMLSEIF-LAAEADPTISVGGILPSIGGNIRVGGPE-FFI 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A  Y +S      ++E                      N+  DH+D+ +      ++ 
Sbjct: 171 TEACEYTNSFLEFFPTIE-------------------VILNIEEDHMDFFKDLADIRSSF 211

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--K 288
            R F +  PK+   +I  +    +E++K   N   RV++ G    F +     +  +  +
Sbjct: 212 TR-FAKKTPKQGAVVINGEIEDWQEIVK---NTEGRVITFGTDRGFDYSAGEISYDSLAR 267

Query: 289 QQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                 + G+  D     + GE  VYNAL AA   +  G+    V   L        RFE
Sbjct: 268 PTFDFYIRGEKQDTLSLGVSGEHNVYNALAAAAAALEAGLSLEAVKRGLLSFTGTKRRFE 327

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G    G  I  DYAH    +   LK  +     RI  VF                 AL
Sbjct: 328 KKGV-LNGVTIIDDYAHHPQEIRASLKTAQNYPHNRIWCVFQPHTYTRTKAFLDEFAEAL 386

Query: 408 DLADIAIVTDDNPRSE-DPEKIRA-EIIHGIPGFIEKG---NRIEAIRTAIEMLN-KQDV 461
            +AD  ++ D     E D   I + +I   I    +K    +  E I   ++      D+
Sbjct: 387 SMADCIVLADIYAARETDTLGISSRDIAEKIERLGKKVWYFHTFEEIEEFLKKSCIHGDL 446

Query: 462 LVVAGKGHETVHIVTNGE 479
           L+  G G     IV  GE
Sbjct: 447 LITMGAGD----IVNVGE 460


>gi|315498794|ref|YP_004087598.1| UDP-N-acetylmuramate/alanine ligase [Asticcacaulis excentricus CB
           48]
 gi|315416806|gb|ADU13447.1| UDP-N-acetylmuramate/alanine ligase [Asticcacaulis excentricus CB
           48]
          Length = 475

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 137/428 (32%), Gaps = 53/428 (12%)

Query: 67  GAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPE 115
           GA+  +      VS   S   +S  ++ + P +V   +R+        + A  +  +   
Sbjct: 59  GAKIFIGHEASHVSDDVSALVYSTAVKHDNPEMVAARSRRIPLVRRAEMLAELMRLQFS- 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +    GL    +     I+++  + ++     I       
Sbjct: 118 --IAVGGTHGKTTTTSMVAALLDAGGLDPTVVNG-GIINAYGTNAKVGDGDWI------- 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RL          TN+  +H+D+    +A        F 
Sbjct: 168 ----------VVEADESDGSFLRLKST---LAIVTNIDAEHLDHWGDFEAVKKG-FVDFV 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
           E +P    A +  D      +  +  N       V  Q +                V  S
Sbjct: 214 ENIPFYGFAAVCVDHPEVLALTAKVENRRLIPYGVSPQAEVRCTNIDFGPEGATFDVVFS 273

Query: 295 VEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             G +         P+ G   V NA  A  +   +G+    V + L     V  RF   G
Sbjct: 274 PVGVEPFVWAGLKLPMTGNHNVSNATAAIAIARELGVSEDDVRKGLGAFGGVKRRFTTTG 333

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G RI  DY H    +  +LK  R +T G++I V                      A
Sbjct: 334 I-VNGVRIIDDYGHHPVEIAAVLKAARQVTQGKVIAVVQPHRYTRLRDLMTEFSTCFHDA 392

Query: 411 DIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNR-------IEAIRTAI-EMLNKQDV 461
           D  IV D     E P E +  + +  +      G+R         A+   +       D+
Sbjct: 393 DKVIVADVYSAGEVPIEGVSKDAL--VEALHRHGHRNAVGLDGPAALAGLVAAEAKAGDL 450

Query: 462 LVVAGKGH 469
           +V  G G 
Sbjct: 451 VVCLGAGD 458


>gi|269926710|ref|YP_003323333.1| UDP-N-acetylmuramate/alanine ligase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790370|gb|ACZ42511.1| UDP-N-acetylmuramate/alanine ligase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 452

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 120/374 (32%), Gaps = 42/374 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH      +  G + +VV+    +  +  + +      L V +  + L    +   G   
Sbjct: 51  GHD--ESHLD-GVDCVVVTKPVMNTSEVLSAVEKG---LKVVDRAELLGQLMNGKKG--- 101

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  + V +I  RSG+    +     +    +           +A+A 
Sbjct: 102 ---IAIAGTHGKTTTTALVAEILIRSGVDPTVL--VGGVPVGWEIGGRYGKDEWMVAEAD 156

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  S    H                         TN+  DH D   T+    +A     
Sbjct: 157 EYARSFLWLH-------------------PELAVITNIEHDHPDIFPTECELVDAFSSFL 197

Query: 235 EELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             + P +    +  +   + EV+K  A  +     + G +G                   
Sbjct: 198 RGMKP-DGKVFVCKESRLAMEVVKGIASASRLYYQTYGVEGG-CDWSARVTRKVGGVTCF 255

Query: 294 SVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + G DF        LPG   + N + A  + I        V   +++   V  RFE+ G
Sbjct: 256 DIIGPDFMLEGLKTSLPGRHNLINIVGAVAVGINASASPEGVKSAIQEFRGVKRRFEYKG 315

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDL 409
             S+G  +  DYAH    +   +   R    GR I V F                 AL L
Sbjct: 316 -ESKGVIVLDDYAHHPTEIAATISAAREYYPGRQIFVAFQPHTYSRTKTFLAHFAEALKL 374

Query: 410 ADIAIVTDDNPRSE 423
           AD   + D     E
Sbjct: 375 ADKVFLLDVYAARE 388


>gi|328952332|ref|YP_004369666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452656|gb|AEB08485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 467

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 131/366 (35%), Gaps = 49/366 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A     +    + A++GT+GK++  + V ++   SG      G   T           
Sbjct: 107 EVAGWHLKRP---VAAISGTNGKTTTTTLVGKMLLASGKRPLVGGNIGTP---------- 153

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 L   LS         + +E SS  LD       +  A +  N+  DH+D +   
Sbjct: 154 ------LVDLLSQ--QAEADCIILEVSSFQLDTA--PSFRPRAAALLNISEDHLDRYPDF 203

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-----RVLSVGYQGKFIH 278
           QAY  +K  LF    P E  A++ ADD  +  +  +  +        + L+ G       
Sbjct: 204 QAYARSKAGLFRRQGPSE-TAVLNADDPKAAALADQVQSQVYLFSTRKKLTFGAWQAGES 262

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L+   A   + +  ++           LPG   + N + A  L + +G       E L +
Sbjct: 263 LRVCLARGPEAKFPLN--------KIVLPGRHNLENIMAALLLALEMGATPQGCAEALAR 314

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +P R E+V   + GG  + D +  +N    +   +R++      VV   GG    G 
Sbjct: 315 FKGLPHRLEWVA--NIGGVDFYDDSKGTN----VGAVVRSLEHFDRPVVLIAGGRDKGGD 368

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
              +  +        I+       E  +KI A +  G        +  +A+  A    + 
Sbjct: 369 YRPLSALLRQRVKKVILL-----GEAQDKIAAAL-SGAALMQPAADMAQAVELAYAAASS 422

Query: 459 QDVLVV 464
            +V+++
Sbjct: 423 GEVVLL 428


>gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 153

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 14/156 (8%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   ++IN   +   Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  
Sbjct: 5   TLKQVEQMINGTGL-AEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +           A    N P++ V++T   L + A     +    ++ VTG++GK
Sbjct: 64  GAVATLWVKDV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGK 117

Query: 127 SSVASFVQQIC-------QRSGLSSFQIGPTSTISS 155
           +S    V  +        +  G  +  IG   TI S
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILS 153


>gi|50086473|ref|YP_047983.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. ADP1]
 gi|59798249|sp|Q6F704|MURC_ACIAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49532449|emb|CAG70161.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ADP1]
          Length = 482

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 138/430 (32%), Gaps = 69/430 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +  + +VVS+A   ++          I VV    + L       +G      +AV GT G
Sbjct: 80  KAVDVLVVSTAIDPENPEVKAAIENRIPVVRRA-EMLGELMRYRHG------IAVAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +     +      PT  I                         +  +   
Sbjct: 133 KTTTTSLLTTMLAEENMD-----PTYVIGGLLNRTG----------------VNAALGAS 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +           ++ +A   TN+  DH+D +             F   LP    A+
Sbjct: 172 RFIVAEADESDASFLYLQPMAAIITNVDADHMDTYGGSFDKLKDTFVEFIHRLPFYGLAV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DD   +E+M R        L+ G+ +   I    V     +   T+  + ++     
Sbjct: 232 VCGDDHNVREIMPRFGRP---TLTYGFNEDNDIRAVDVVQEGMQSHFTVLRKDREPLRLT 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYV 360
              PG   + NAL A G+    G+  A +   LE    V  RF+  G    G    ++  
Sbjct: 289 VNQPGLHNILNALAAIGVATDEGVSDAAIARALEGFSGVGRRFQVQGEFELGEGSVKLVD 348

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +E  +K  R +    R++++F                  L   D  ++ +  
Sbjct: 349 DYGHHPKEVEATIKAARQSHPDRRLVMMFQPHRFSRTRDCFDDFVEVLSQVDQLLLLEVY 408

Query: 420 PRSEDP-------------------EKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQ 459
           P  E P                   E I  + + G +P  I+K             L   
Sbjct: 409 PAGEKPIVGADSRTLARSIRLRGDVEPILVDPVEGNLPNIIQKV------------LQPN 456

Query: 460 DVLVVAGKGH 469
           D+L+  G G+
Sbjct: 457 DLLLTQGAGN 466


>gi|228476841|ref|ZP_04061486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
 gi|228251415|gb|EEK10560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
          Length = 450

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 145/412 (35%), Gaps = 54/412 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----------FASRLYGK 112
           + +G + +       L D +  +    P +  DN     +L            A  +   
Sbjct: 53  LEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNPMVARALEKGIPVWTEVELAYLVSE- 111

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+ +TG++GK++  + +  +    G S    G    I   A +   +  +   L  
Sbjct: 112 --APIIGITGSNGKTTTTTMIADVLNHGGKSGVLSG---NIGFPASEVAQSVTAQDTLVM 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            LS     G                 +D         TNL   HIDYH + + Y  AK  
Sbjct: 167 ELSSFQLMG-----------------IDSFHPHIAVITNLMPTHIDYHGSFEEYVAAKWN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + +  +  +   ++  +   +KE+  +         +V  +       +   ++ K ++ 
Sbjct: 210 I-QNQMTADDFVVLNFNQDLAKELATQTKAQVVPFSTV--EKVDGAYLENGGLYFKGELV 266

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +         +PG   V NAL    +    GI +  + E L     V  R +FV T 
Sbjct: 267 MQAD------EIGVPGSHNVENALATIAVAKLSGISNQAIKETLASFGGVKHRLQFVDTI 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               + Y D   T+  +    K +        +++   G DR      ++  I   L  +
Sbjct: 321 DE-VKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELIPDI-TGLKKM 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+ +  PR +     RA    G+  +++  +  +A R A +  +  DV+++
Sbjct: 376 VILGESAPRVK-----RAADKAGVT-YLDAKDVADATRIAFDQASAGDVVLL 421


>gi|255015709|ref|ZP_05287835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           2_1_7]
          Length = 441

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 120/365 (32%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G     +G    + +        
Sbjct: 91  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAG---VDVGLAGNVGN-------- 136

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++        +E SS  LD   +   +       N+  DH+D +   
Sbjct: 137 --------SLALQVAEDPHAVYVIELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYE 186

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +     ++      D   ++E+ KR   A              H   V
Sbjct: 187 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPF------AETHENGV 240

Query: 283 CAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                  QV I      F     L  L G   +YN+L +      + I    +   L   
Sbjct: 241 KGYTENNQVVIETANGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDF 300

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V        I    A   NS    L+++ T      +V+   G D+     
Sbjct: 301 TGVEHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTT-----PVVLILGGTDKGNDYS 355

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            I   +   +  +  +  DN       K+ A     +    +  +  EA+  A +M +K 
Sbjct: 356 EIEELVNKKVHSLIFMGVDNT------KLHAFFDGKVANIEDARSMEEAVAKAYKMAHKG 409

Query: 460 DVLVV 464
           D +++
Sbjct: 410 DTVLL 414


>gi|182626009|ref|ZP_02953772.1| Mur ligase family protein [Clostridium perfringens D str. JGS1721]
 gi|177908716|gb|EDT71227.1| Mur ligase family protein [Clostridium perfringens D str. JGS1721]
          Length = 560

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 32/372 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK+S +  + +  +  G   +  G   T      +  +          A  
Sbjct: 164 PIVSITGTNGKTSTSRLIYKGFENLG---YFSGLAMTGGIIINNEFVKKGDTTGFYSAKK 220

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+  
Sbjct: 221 VLTNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLIT 280

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN----------AGCRVLSVGYQGKFIHLKKVC 283
             E+LP+     I   +    EV++   N             + +  G +  F+  + V 
Sbjct: 281 TREVLPEGKV--IIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVI 338

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
               K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +    
Sbjct: 339 FFDGKDKNIIS-NIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDV 397

Query: 342 --VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR   +   +   +I +DY H   + E +      I   +II +    GDR     
Sbjct: 398 YNNIGRQNIIELEN--FKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYI 455

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRT 451
             +G+IA + +D  I+ +  + R  +  +I   I  GI     K        +  EAI+ 
Sbjct: 456 KELGRIAGENSDTIIIKETFDRRGREKLEITNLIKSGIKEVENKSVEVLSIIDEEEAIKK 515

Query: 452 AIEMLNKQDVLV 463
           AI M  + D++V
Sbjct: 516 AISMAEEGDIIV 527


>gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132]
 gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132]
          Length = 802

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 141/388 (36%), Gaps = 35/388 (9%)

Query: 35  SDSRHI-QAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTP 91
           +DSR + +    IF AI G + DGH FIP+   +G    VV   A++ +      +    
Sbjct: 15  TDSRFLSKPDSSIFFAIKGERHDGHQFIPELYDKGIREFVVEKRAFNEKLKGILEKEEVK 74

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+VD++   L   A +   K+   ++ +TG++GK+ V  ++  +  +            
Sbjct: 75  ALLVDSSILTLQEMAGKNRQKYDHPVIGITGSNGKTIVKEWLNALLDK------DFDIVK 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           +  S+     +        ++    +   G+       S  G  +     I+   G FTN
Sbjct: 129 SPRSYNSQIGVALSVWEMSSRYQLGIFEAGI-------SLPGEMKALQKIIQPTIGVFTN 181

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H +  ++ +     K++LF   +  E+           +EV          +  V 
Sbjct: 182 IGSSHSEGFESDRQKIREKLQLF---VKSETLIYCRDYSEIEEEVNAFLLEQNPNLKIVS 238

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +    + +K         +     +G+ ++   P      V N +      ++  +    
Sbjct: 239 WSKADVEVKD-------GKAYFLWKGEKYE--LPFIDAASVENLVHCILAALS--VKEDW 287

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI---RTITSGRIIV-- 386
            +  L  L+ V  R E          I   Y +    L+M L+ +    T+    +I+  
Sbjct: 288 DVRRLRFLNPVEMRLELKEGREDNYIIDDTYNNDLGGLKMALQFMSQAHTLRGKVLILSD 347

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +F  G + +   R +   IA    +  I
Sbjct: 348 MFQTGLEGESLSRVMQDLIAPQGLNTFI 375


>gi|297539591|ref|YP_003675360.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
 gi|297258938|gb|ADI30783.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
          Length = 472

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 142/410 (34%), Gaps = 53/410 (12%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           + ++          I VV      L+       G      +AV GT GK++  S +  I 
Sbjct: 75  NEENPEVKAARAKKIPVVPRALM-LAELMRFRQG------IAVAGTHGKTTTTSLIASIL 127

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +G+      PT  I                L  A +        ++  EA        
Sbjct: 128 AEAGMD-----PTFVIGGK-------------LEAANANAKLGTGEYIVAEADESDAS-- 167

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               +  +    TN+ +DH+D ++       +    F + LP    A++  DDA  +E++
Sbjct: 168 -FLHLTPVMAVVTNIDQDHMDTYEHSFDKLKSAFVEFLQQLPFWGMAVVCIDDANIREIL 226

Query: 258 KRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-SVEG--KDFDFLFPLPGEFQVY 313
            R       V++ G+          V A   K   T   + G   +FD    LPG   V 
Sbjct: 227 PRVTKP---VMTYGFSEDARVRAINVRADDGKMHFTAQRINGVVTEFDVTLNLPGNHYVL 283

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSL 369
           NAL A  +   + +  A +++ L++   V  RFE  G           +  DY H    +
Sbjct: 284 NALAAIAIASELNVPDAAIIKALKEFKGVGRRFERYGEIAVKGGGAFTLIDDYGHHPVEM 343

Query: 370 E-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE----- 423
           + +I        + R+++ F                  L   D  ++T+     E     
Sbjct: 344 QAVIAAARAAFPNRRLVMAFQPHRYTRTRDCFEDFVRVLSSTDAVLLTEVYSAGEASIVA 403

Query: 424 -DPEKIRAEIIHGI---PGFIEKGNRI-EAIRTAIEMLNKQDVLVVAGKG 468
            D   +   I  G    P F+E  + + EAI   + M    DV++V G G
Sbjct: 404 ADTRSLIRSIRIGGKVEPLFVETTDELPEAI---LNMAQADDVVIVMGAG 450


>gi|228472694|ref|ZP_04057454.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276107|gb|EEK14863.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 444

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/365 (18%), Positives = 137/365 (37%), Gaps = 44/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR        I+A+TG++GK++  + V  + + +GLS    G               
Sbjct: 93  EFASRYTD---AKIIAITGSNGKTTTTTLVYHLLKEAGLSVAVGGNIG------------ 137

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++ +   +  +E SS  LD   +           N+  DH+D +   
Sbjct: 138 -------YSFARLVAQEPKEYYVLEISSFQLDD--ITSFHPHIALLLNITPDHLDRYNYE 188

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AKMR+  E        I  ADD  + + + +      ++L    +  F      
Sbjct: 189 FQNYIDAKMRI-TEFQQAADFLIYDADDPVTAQEIGKGQ-VKAQLLPFSLEKTFERGA-- 244

Query: 283 CAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               +++ + ++V    F+       + G+  + NA+ A  +   + + +  +   L   
Sbjct: 245 -WSLDEKNMYVNVNQNIFEMSTKDLTIKGKHNLKNAMGATMVAKLLNVRNENIRNSLMTF 303

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VP R EFV        I    A   NS+      + ++  G + +V   G D+     
Sbjct: 304 QGVPHRLEFVREVEGVRYINDSKATNVNSV---YYALDSMEEGLVWIV--GGQDKGNDYT 358

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           P++  ++  +  I  +  DN      +KI       +P  IE  +  +A++    +  + 
Sbjct: 359 PLIPYVSKKVKAIVCLGLDN------QKIIQTFQSIVPTIIETHSMEDAVQVGRGLSQEG 412

Query: 460 DVLVV 464
           D +++
Sbjct: 413 DTVLL 417


>gi|182420535|ref|ZP_02643564.2| Mur ligase family protein [Clostridium perfringens NCTC 8239]
 gi|182380050|gb|EDT77529.1| Mur ligase family protein [Clostridium perfringens NCTC 8239]
          Length = 560

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 32/372 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK+S +  + +  +  G   +  G   T      +  +          A  
Sbjct: 164 PIVSITGTNGKTSTSRLIYKGFENLG---YFSGLAMTGGIIINNEFVKKGDTTGFYSAKK 220

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L++  V   ++E +  G+ +  L          T+L  DHI  D  +      + K+  
Sbjct: 221 VLTNPQVEVGALETARGGILKKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLIT 280

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN----------AGCRVLSVGYQGKFIHLKKVC 283
             E+LP+     I   +    EV++   N             + +  G +  F+  + V 
Sbjct: 281 TREVLPEGKV--IIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVI 338

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
               K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +    
Sbjct: 339 FFDGKDKNIIS-NIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDV 397

Query: 342 --VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR   +   +   +I +DY H   + E +      I   +II +    GDR     
Sbjct: 398 YNNIGRQNIIELEN--FKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYI 455

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRT 451
             +G+IA   +D  I+ +  + R  +  +I   I  GI     K        +  EAI+ 
Sbjct: 456 KELGRIAGKNSDTIIIKETFDRRGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIKK 515

Query: 452 AIEMLNKQDVLV 463
           AI M  + D++V
Sbjct: 516 AISMAKEGDIIV 527


>gi|125717507|ref|YP_001034640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           sanguinis SK36]
 gi|158513223|sp|A3CLN5|MURD_STRSV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125497424|gb|ABN44090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Streptococcus sanguinis SK36]
          Length = 450

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 139/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 103

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q+    G +    G    I   A     T  S
Sbjct: 104 ELAYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASS 160

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G                 ++         TNL   H+DYH + + Y
Sbjct: 161 KDMLVMELSSFQLMG-----------------IEDFHPQIAVITNLMPTHLDYHGSVEEY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +         +          K   A  
Sbjct: 204 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQATVVPFSTTE--------KVDGAYL 254

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 255 EGDVLTFRGEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 315 QYVGQVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 370

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA    G+  +++  +  +A   A       D++++
Sbjct: 371 G-LKKMVILGQSAARVK-----RAADQAGV-SYLDATDVRDAAHKAFAQAEPGDIVLL 421


>gi|294101816|ref|YP_003553674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616796|gb|ADE56950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
          Length = 457

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 139/401 (34%), Gaps = 50/401 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVSS  S Q           I V+             +       ++ VTG++GKS
Sbjct: 72  ADCIVVSSGISPQASVVKKAQGRGIPVIGEI--------DFVAPHIKGKVIGVTGSNGKS 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  + ++ G  +   G                         LS  +SQ +  + +
Sbjct: 124 TTTMLIGHLLKKYGYKTAVAGNIGN--------------------PLSLHASQNLDFIVI 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L    L  +K      TNL  DHID+H +   Y  AK RL     P     +  
Sbjct: 164 ELSSFQLYWAHL--LKSHVAIVTNLAPDHIDWHGSFTNYLKAKARLVRLQEPGHWAVVQN 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDF---L 303
            D    +   K A      V S+ ++G+    K    I    Q+  +S   K+  F    
Sbjct: 222 RDVDALQLSGKSA------VASLYWEGQEPVHKTDAYICMGEQEAWLSYNKKELLFDYRD 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   + N  + A   I  G+  + + + L     +P R  FV     G R   D  
Sbjct: 276 VDLIGRHNLENLAMTASALILGGVPCSNLTKQLSDFIPLPHRCTFV-AEINGVRYIDDSK 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            T+ +                 VV   G  + +   P+  +     A +AIV      +E
Sbjct: 335 GTNVAASATALTSIHGPK----VVILGGQGKGEDYSPL-AEAVKKEARVAIVLG----AE 385

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               + A    G    IE  +  +A++ A+ +    + +++
Sbjct: 386 KKPIVTALEGAGFARHIEVDSMEDAVKAAMALSLPGETVLL 426


>gi|332295509|ref|YP_004437432.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense
           DSM 14796]
 gi|332178612|gb|AEE14301.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense
           DSM 14796]
          Length = 478

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 149/443 (33%), Gaps = 55/443 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   P  I++  +A+V S A    +    +  + N P+L          + +  +  K 
Sbjct: 59  GHS--PDNISKDVDAVVYSGAIPSDNCELLSARQRNIPVL------SRAQMLSKIIEQKF 110

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S + ++    GL    +     I     D              
Sbjct: 111 S---IAVAGTHGKTTTTSMISKMLNDGGLDPSFL-----IGGELNDYGANARHGSGPYIV 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +    S G                     K      TN+  DH  +    +   +     
Sbjct: 163 IEADESDGSFLNY----------------KPNIAVITNIDFDHPSFFSDLKMVED-YFEK 205

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + + ++   ++  D A ++ V +R  +        G   + +  K V          +
Sbjct: 206 FMQGISEDGKLVVCGDHAVTRSVAERITDKEKIFYGFGDNNQ-VQCKNVILSGFGSYYDL 264

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +EG+   +    +PG   V N+L A  +   IG+D     + +     V  RFE     
Sbjct: 265 YIEGEKIGEITLNVPGIHNVLNSLAAFSVAKIIGLDFVSAFDSIASFSGVRRRFEL---K 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +   I  DYAH    +  +L   R+      ++++F         K        L  AD
Sbjct: 322 CKDPYIIDDYAHHPEEINAVLNTARSIFKDKNLVLIFQPHRFSRTEKFLNNFCDILTKAD 381

Query: 412 IAIVTDDNPRSEDPE------KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVL 462
             ++ D  P  E         K+  E    +     F+ K +  E I+   E+  +++V 
Sbjct: 382 TLLLFDVFPAGEKTANPYLGNKLFEECKKRMKDNVFFVSKDSIYELIQ---EIHGEKNVY 438

Query: 463 VVAGKGHETVHIVTNGEKKMSVD 485
           +  G G  T   + +    + +D
Sbjct: 439 LFMGAGDIT--KICDKVASIFLD 459


>gi|203284225|ref|YP_002221965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
 gi|201083668|gb|ACH93259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
          Length = 465

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 144/426 (33%), Gaps = 35/426 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI----QAGWIFVAIVGNKEDG 56
           +K++D++      L +   I  +   ++ ++  S DSR I        ++ A  G++ DG
Sbjct: 4   IKIKDIL----DSLKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDG 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +  V S    L       +  +   L+  N    L   A+    K   
Sbjct: 60  FFFVKYLIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRF 119

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I         +     T  +   D              L 
Sbjct: 120 KRIAITGSNGKTTTKEMLYSILSE------RYKTCKTWGNLNSDIG-------LPLSILR 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +      V  S  G      + +       TN+   H+   +  +     K ++  
Sbjct: 167 TKGDEEYAVFEVGISYVGEMNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIIT 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    I+         + + A +    +    ++   + ++    +++K     + 
Sbjct: 227 ---KDTKMLILNESCPQHVYLEEIAKSVNPNINIFYFEFHNLQIRSFSFVNDKFSYDFTY 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G D+  L  LPG+  + NA+    L + +G+    +   L       GR E V    + 
Sbjct: 284 KGCDYSIL--LPGKHNICNAISCINLALFLGLSENEIRNGLLHADFQKGRAELVRI--KD 339

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGC----GGDRDQGKRPIMGKIALDL 409
             +  D Y    +S   + + I  +    R I+V G     G    +  +  + ++ L  
Sbjct: 340 YLVLNDSYNGNLSSFMALKEMILDLEIKDRKIIVLGSFKELGKFAYEVHKTAIEEVVLMN 399

Query: 410 ADIAIV 415
            D   +
Sbjct: 400 FDKVFL 405


>gi|160947656|ref|ZP_02094823.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
 gi|158446790|gb|EDP23785.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
          Length = 466

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 137/440 (31%), Gaps = 61/440 (13%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR---------------KFLSLFASRL 109
             GA+  +     ++++    + ++   ++ DN                 +FL       
Sbjct: 54  KNGAKIFIGQKKENIENPDLIVYTDA--ILPDNEELIKAKSIGVPCVTRGQFLGALMRNY 111

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                   +A++G+ GKS+  S + +I       +    P+  I     +          
Sbjct: 112 THS-----IAISGSHGKSTTTSMISKIL-----INSPFDPSILIGGNLDEI-----DGNV 156

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L     YL ++     +     +                  N+  DH+D+++      + 
Sbjct: 157 LCGNEDYLVTEACEFKANILHYY-----------PSMAIILNIDEDHLDFYKNLDHIVDT 205

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK- 288
            +   + L  + S AII  DD     +++         ++ G   +           +K 
Sbjct: 206 FIGYMKNL-DENSKAIINIDDPNCLPLLEHIKG---ETITFGINNENATYNITNISFDKV 261

Query: 289 QQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                 +E + F    F   + G   +YNA  A       GID   +   + K   +  R
Sbjct: 262 GHPCFDIENEKFGKHHFCLNIIGRHNIYNAAAAIIATYETGIDVEYIKNAISKYKNLHRR 321

Query: 346 FEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            E  G    G    I  DY H    ++  L +I     GR++ +F               
Sbjct: 322 MEVYGVIGNGKKATILTDYGHHPREIKSCLSSIAEHKEGRLVCIFQPHTYSRTKALLNDF 381

Query: 404 KIALDLADIAIVTDDNPRSE--DPE----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
               D  D  IVT+     E  DP      +  ++       I      EA     E   
Sbjct: 382 AKCFDDCDEVIVTEIYAAREKFDPTIHSIDLVEKLNKNGVNAIYLKTFEEARDYIFETFK 441

Query: 458 KQDVLVVAGKG--HETVHIV 475
            +D ++  G G  HE   ++
Sbjct: 442 DKDTIITTGCGNPHELAKMI 461


>gi|262273812|ref|ZP_06051625.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
 gi|262222227|gb|EEY73539.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
          Length = 487

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 153/436 (35%), Gaps = 52/436 (11%)

Query: 50  VGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            G K     F+  A +   GA  +VVS+A   QD    + + T  + V    + L+    
Sbjct: 66  KGAKV----FLGHAESNVDGASVVVVSTAIR-QDNPELVAAKTARIPVVRRAEMLAELMR 120

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             +G      +AV GT GK++  +    I Q +GL    +      S+        +   
Sbjct: 121 YRHG------IAVAGTHGKTTTTALTTLIYQEAGLDPTFVNGGLVKSAGTNARLGCS--- 171

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 ++       + +                ++ +    TN+  DH+D +       
Sbjct: 172 ---RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYGGNFDNL 213

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIH 286
                 F   LP    A++  DD   +E++ R      +V++ G+ +   + LK      
Sbjct: 214 KQTFIDFLHNLPFYGLAVMCVDDPVVRELIPRIGR---QVITYGFSEDADVRLKDYRQEG 270

Query: 287 NKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            K   T+   GK D      +PG     NA  A  +    G++   +L  L        R
Sbjct: 271 QKGIFTVLRAGKPDIHVELNIPGRHNALNAAAAVAVATEDGVEDDAILRALASFEGTGRR 330

Query: 346 FEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           F+ +G    +     +  DY H  + +++ ++  R      R+++VF             
Sbjct: 331 FDQLGLFPVDDGYALLVDDYGHHPSEVDVTIQAARAGWADNRLVMVFQPHRYSRTRDLYD 390

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIE 454
                L+  D+ ++ D  P  E P        +   I   G    I   + ++A+  A+ 
Sbjct: 391 DFANVLEQVDVLLMLDVYPAGEAPIAGADGRSLCRTIRGRGKIDPIFVPD-VDALPAALA 449

Query: 455 ML-NKQDVLVVAGKGH 469
            +    D+++  G G 
Sbjct: 450 AVIQPGDLVLTQGAGD 465


>gi|325168919|ref|YP_004280709.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
 gi|325064642|gb|ADY68331.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
          Length = 1056

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 130/404 (32%), Gaps = 45/404 (11%)

Query: 91   PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            P+L V +  + +         +   ++LAVTG++GK++V + +       G  +      
Sbjct: 675  PVLKVADNMQAVLAMGDYARSRMTGSVLAVTGSAGKTTVVAMLAHALSAWGNVAKSNHNA 734

Query: 151  STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            +  +  A +         ++   L+                 G         +     FT
Sbjct: 735  NLPAGVAWNLASIPWETPHVVLELAI----------------GKMAISARMARPKVAIFT 778

Query: 211  NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            N+   H+    T       K  +F  + P +  A++  D      V   A      +++ 
Sbjct: 779  NVLPAHLGEKSTVTDIARTKSAIFLGMEPGD-TAVLNRDMLEWDTVHDAASRRKLEIVTY 837

Query: 271  GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            G   +    + +      +     +  ++  FL    G     N L        +G    
Sbjct: 838  GTS-EECMCQLLRYDAASRHAHARIRNREVSFLIGAAGSHMALNGLAVLAAISVLGHPLE 896

Query: 331  LVLEHLEKLHVVPGRFEFVGT--NSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
              +  LE    +PGR E +    + R   +  D Y     S+   L  +     GR I V
Sbjct: 897  PAIAQLESFAALPGRGEEIHLLLDGRRLTVIDDAYNANPGSMRAALARLGDHIGGRRIAV 956

Query: 388  FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-- 445
             G   +   G+     ++A  + D +I         D   +  ++       +   +R  
Sbjct: 957  LGEMAELGPGRAAYHTELAAFIQDRSI---------DEVYVTGDLYSDFWKALSPSSRGL 1007

Query: 446  ----IEAIRTAI-EMLNKQDVLVVAGKG------HETVHIVTNG 478
                 +A++  + E L   D ++   KG      HE V  + N 
Sbjct: 1008 YAESRQALKEILRERLVDGDTVLF--KGSHSTGMHELVEWLKNN 1049


>gi|324990672|gb|EGC22608.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK353]
          Length = 459

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 138/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q+    G +    G    I   A     T  +
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASN 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G+                           TNL   H+DYH + + Y
Sbjct: 170 KDTLVMELSSFQLMGIEAFY-----------------PQIAVITNLMPTHLDYHGSVEEY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +         +          K   A  
Sbjct: 213 AVAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQATVVPFSTTE--------KVDGAYL 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 264 EGDVLTFRGEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGQVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA    G+  +++  +  +A   A       D++++
Sbjct: 380 G-LKKMVILGQSAARVK-----RAADQAGV-SYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|282866568|ref|ZP_06275611.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
 gi|282558615|gb|EFB64174.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
          Length = 464

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 87/433 (20%), Positives = 151/433 (34%), Gaps = 46/433 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A  +VVSSA    +      +   + VV  +    +L     
Sbjct: 54  GATVHIGH--AAGHLADDASCVVVSSAIRPDNPELVRAAELSVPVVHRSDALAALMEGL- 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   +AV GT GK++  S +       G   S+ IG                    
Sbjct: 111 ------RAIAVAGTHGKTTTTSMLAVALSGLGLDPSYAIG-------------------G 145

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L    +  +  G      EA     D+     +        N+  DH   + +    + 
Sbjct: 146 DLEGPGTNAAHGGGDIFVAEADES--DRSFQKYV-PQVAIVLNVELDHHANYASMDEIYE 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGY-QGKFIHLKKVCAIH 286
           +    F   +      ++ AD   + E+ +R       +V++ G  +G  + + K+    
Sbjct: 203 S-FETFTGKVVPGGTLVVSADQQGAVELTRRVRGQDGLQVVTYGEAEGADVRVHKITPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+ + GK   F   +PG     NA+ A    +A+G+ +  +   +     V  R 
Sbjct: 262 LTSEVTVVLGGKYLTFTVSVPGRHYALNAVAALAAGVALGVPAHNLASAIGTYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
           +  G  + G ++   YAH    +   L+ +R   +G R++VVF         +       
Sbjct: 322 QLKGEAA-GVQVIDSYAHHPTEMAADLEAMRGAAAGSRLLVVFQPHLFSRTQELGTEMGQ 380

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNK 458
           AL LAD ++V D  P  EDP      E I               ++   I  A+  M   
Sbjct: 381 ALALADASLVLDIYPAREDPIPGITSELIIDAAKTAGADVTAVHDKAR-IPAAVAGMAKP 439

Query: 459 QDVLVVAGKGHET 471
            D+++  G G  T
Sbjct: 440 GDLVLTMGAGDVT 452


>gi|167750587|ref|ZP_02422714.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
 gi|167656513|gb|EDS00643.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
          Length = 511

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 114/309 (36%), Gaps = 23/309 (7%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G     ++ +TG+ GK+S   +++++           G    +    +    T      
Sbjct: 163 NGLPDLTVVGLTGSYGKTSTKFYLEKLL----------GAKYNVLMTPESYNTTMGVVKV 212

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +   L+  ++  +    + A + G  +   D +K   G  T++G  H++  ++       
Sbjct: 213 VRGQLN--ATHEIFLCEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKT 270

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  L + L  K+    +  D+ Y   + K   N      S+G  G   +   +    N  
Sbjct: 271 KFELADSLPDKDGIIFLNYDNEY---IAKHECNKNKVTYSLG-GGTDYYADNISVSENGT 326

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q T+    ++  F   L G   V N + A  +   +G+  A ++  +++L  VP R + +
Sbjct: 327 QFTVHNGNEEKQFATKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECVPHRLQII 386

Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKI 405
              ++   I  D +       +  L  +     G  I+V        +++       G+ 
Sbjct: 387 KGTNK--TIIDDAFNSNPTGAKAALDTLAVF-DGFKILVSPGMVELGEKEYELNKRFGEQ 443

Query: 406 ALDLADIAI 414
           A ++ D  I
Sbjct: 444 AAEICDFVI 452


>gi|124266216|ref|YP_001020220.1| cyanophycin synthetase [Methylibium petroleiphilum PM1]
 gi|124258991|gb|ABM93985.1| cyanphycin synthetase [Methylibium petroleiphilum PM1]
          Length = 855

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 142/390 (36%), Gaps = 40/390 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF     G+ P  ++AVTGT+GK++ A  +  +   SGL    +G T+T   + +  ++ 
Sbjct: 460 LFGHGDDGRIP--VVAVTGTNGKTTTARLIAHLFATSGLR---VGMTNTDGVYVEGRQID 514

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHID--YH 220
           +        A + L    V     E +  G+ +  L   +      TN+G  DH+   Y 
Sbjct: 515 SGDCSGPKSARNVLMHPDVDAAVFETARGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYI 574

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T +     K R+  + + +   A++ A D     V   A      V+         H  
Sbjct: 575 TTVEDLAVLK-RVIVQNVAQSGYAVLNATDVN---VAAMAGTCPGDVIFF---AADRHHP 627

Query: 281 KVCAIHNKQQVTISVEG----------------KDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +     + + T+ VEG                +D          FQV NA+ A      
Sbjct: 628 VMATHRAQGKRTVYVEGDALVAAQGAWREKLLLRDIPLTRGGTIGFQVENAMAAVAAAWG 687

Query: 325 IGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +G+D   V   L             F   + +G  +  DY H  +++  ++  +  + + 
Sbjct: 688 VGLDWDTVRRGLASFVNDADNAPGRFNVMDFKGATVIADYGHNPDAMRALVAAVDAMPAT 747

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIE 441
           R  VV    GDR         +I     D  ++  D   R     ++ A +  G+ G   
Sbjct: 748 RRAVVISGAGDRRDDDIREQTQILGAAFDDVLLYQDAAQRGRADGEVIALLREGLRGATR 807

Query: 442 KGNRIE------AIRTAIEMLNKQDVLVVA 465
             +  E      AI TA++ L   ++ +V 
Sbjct: 808 TRHVEEIHGEFIAIDTALDRLKPGELCLVL 837


>gi|218258175|ref|ZP_03474577.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225698|gb|EEC98348.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
          Length = 453

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 125/365 (34%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I +++G     +G    + +        
Sbjct: 103 EFAGRYTD---AKMICITGSNGKTTTTMLTYHILRQAG---VDVGLAGNVGN-------- 148

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++        +E SS  LD   +   K       N+  DH+D +   
Sbjct: 149 --------SLALQVAEDPHAVYVIELSSFQLDN--MYDFKADIAILLNITPDHLDRYNYE 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +    +++      D   ++E+ KR   A     +  ++        V
Sbjct: 199 MQNYVDAKFRILQNQTAEDAFIFWNDDPIIAREIAKRHPEATLYPFAETHEA------GV 252

Query: 283 CAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                 +++ I      F     L  L G   +YN+L +      + I    +   L   
Sbjct: 253 KGYTEDKKIRIETSNGTFTMEQDLLALSGTHNLYNSLASGIASKLVDIHDENLRASLSDF 312

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V        I    A   NS    L+++ T      +V+   G D+     
Sbjct: 313 TGVEHRLEKVARVRGVDYINDSKATNVNSCWYALQSMTT-----PLVLILGGTDKGNDYS 367

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            I   +   +  +  +  DN       K+ A     +P   +  +  EA+  A ++  K 
Sbjct: 368 EIEELVKKKVHALIFLGVDNT------KLHAFFDGKVPVIEDARSMEEAVSKAYKLAEKG 421

Query: 460 DVLVV 464
           D +++
Sbjct: 422 DTVLL 426


>gi|167586015|ref|ZP_02378403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia
           ubonensis Bu]
          Length = 292

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 100/289 (34%), Gaps = 20/289 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR +  G +FVA+ G + D H F+    A+GA A +VS   +         
Sbjct: 24  VTFERVSTDSRTVGPGDLFVALKGERFDAHDFLADVAARGAAAALVSHTPAGLAMPTIEG 83

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                     TR  L   A     + P  ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 84  GE--------TRAALGALAHGWRKRFPLPVVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +++                  L   ++  +  + +  +  G  +           
Sbjct: 136 ATAGNLNN----------DVGLPLTLLRLNAAHRLAVIELGMNHPGETEILARLTAPTVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A       +   L P +  A+  ADDAY+      A       
Sbjct: 186 LVNNAQREHQEFMATVEAVALEHAAVIHALAP-DGVAVFPADDAYAGIWRVAATGNRIVD 244

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            ++   G+     +V    +   + I              G     NAL
Sbjct: 245 FALD-DGERHTDAQVTGRVDGGALAIDTPAGSITVRLRALGAHNARNAL 292


>gi|260063714|ref|YP_003196794.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783159|gb|EAR14332.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 464

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 130/362 (35%), Gaps = 37/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS         ++A+TG++GK++ A     + ++ G+ +   G               
Sbjct: 112 EFASWYCQ---ATLVAITGSNGKTTTAMLTHHLLRQGGMDAALAGNIG------------ 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                      + ++ +      +E SS  LD   + G +      TN+  DH+D ++  
Sbjct: 157 -------DSFAAMVARESHPCYVLEVSSFQLD--GILGFRPHIAVITNITPDHLDRYEYR 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y  +K R+ E   P +       D   ++E+   A  A    L++          K 
Sbjct: 208 MDRYIASKKRIAENQGPSDFLVFDRDDPVLAREINPEAFAANLLPLTLEEDPGAAGWLKG 267

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             I+ + +   +      +    L G   + N + AA +   +GI    + E +      
Sbjct: 268 NDINIQLEKE-NTPLTMSNDTLALEGRHNMKNTMAAATVARLLGIRKESIRESVANFQGA 326

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E V        I    A   N        + ++T+  + +V   G D+    +P+M
Sbjct: 327 PHRLERVLKIHHVQYINDSKATNVN---ATFYALDSMTAPTVWIV--GGVDKGNDYKPLM 381

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +  I  +  DN R      I     + +   +E     EA++ A ++  + D +
Sbjct: 382 PLVREKVKAIICLGADNSR------IVEAFGNAVDLLVETYAMSEAVKVAYKIAERGDNV 435

Query: 463 VV 464
           ++
Sbjct: 436 LL 437


>gi|170764283|ref|ZP_02640360.2| Mur ligase family protein [Clostridium perfringens CPE str. F4969]
 gi|170713818|gb|EDT26000.1| Mur ligase family protein [Clostridium perfringens CPE str. F4969]
          Length = 560

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 32/372 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK+S +  + +  +  G   +  G   T      +  +          A  
Sbjct: 164 PIVSITGTNGKTSTSRLIYKGFENLG---YFSGLAMTGGIIINNEFVKKGDTTGFYSAKK 220

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+  
Sbjct: 221 VLTNPQVEVGVLETARGGILKKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLIT 280

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN----------AGCRVLSVGYQGKFIHLKKVC 283
             E+LP+     I   +    EV++   N             + +  G +  F+  + V 
Sbjct: 281 TREVLPEGKV--IIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVI 338

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
               K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +    
Sbjct: 339 FFDGKDKNIIS-NIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDV 397

Query: 342 --VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR   +   +   +I +DY H   + E +      I   +II +    GDR     
Sbjct: 398 YNNIGRQNIIELEN--FKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYI 455

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRT 451
             +G+IA + +D  I+ +  + R  +  +I   I  GI     K        +  EAI+ 
Sbjct: 456 KELGRIAGENSDTIIIKETFDRRGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIKK 515

Query: 452 AIEMLNKQDVLV 463
           AI M  + D++V
Sbjct: 516 AISMAKEGDIIV 527


>gi|145595727|ref|YP_001160024.1| UDP-N-acetylmuramate--alanine ligase [Salinispora tropica CNB-440]
 gi|189082497|sp|A4X9R5|MURC_SALTO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145305064|gb|ABP55646.1| UDP-N-acetylmuramate--L-alanine ligase [Salinispora tropica
           CNB-440]
          Length = 514

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 141/415 (33%), Gaps = 49/415 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V SSA               + V+  +       A+ + G+     +AV GT GK
Sbjct: 79  GVDTVVYSSAIPSDHLELVEARRRGLRVLHRSEA----LATAMTGR---RTVAVAGTHGK 131

Query: 127 SSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           ++  S V  + Q++G+    +  G  S + S A                           
Sbjct: 132 TTTTSMVTMVLQQAGVDPSFVIGGEISEVGSGAHHGTGDY------------------FV 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + S      +R           TN+  DH++ +        A    F  L   +   
Sbjct: 174 VEADESDRSFLIYR-----PFVSIITNIEADHLNTYGDLANLEAA-FADFARLTDPDGFI 227

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           I  ADD   + + +     G RV + G      + L ++ +     +    ++G+   +F
Sbjct: 228 ITCADDVGGRRLAETLRAEGRRVYTYGISTDADLRLTEMASSTRGIRYLAEIDGRSLGEF 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG     N+  A      + +        L     V  RFE  G  +    +Y +Y
Sbjct: 288 RLPVPGRHMGLNSASAVLAEYLLDLPLEAAQSALAAFPGVRRRFERKGV-ADDVLVYDEY 346

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           A+    + + L+ +R +   G +IVVF                 AL +AD  ++ +    
Sbjct: 347 AYHPTPIALALRTLREVAGDGGLIVVFQPYRLYRTRDLQAEIAEALAIADELVLLEVFGP 406

Query: 422 SE--DPEKIRAEIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVVAGK 467
            E  +P +  A +I  +P  +   +R         A           DV+V  G 
Sbjct: 407 GELREPGEGSAALIEAVPLPV---DRKVFVDSWDAAPVEVARRAKPGDVVVTMGA 458


>gi|110800740|ref|YP_697134.1| Mur ligase family protein [Clostridium perfringens ATCC 13124]
 gi|110675387|gb|ABG84374.1| Mur ligase family protein [Clostridium perfringens ATCC 13124]
          Length = 560

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 140/372 (37%), Gaps = 32/372 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK+S +  + +  +  G   +  G   T      +  +          A  
Sbjct: 164 PIVSITGTNGKTSTSRLIYKGFENLG---YFSGLAMTGGIIINNEFVKKGDTTGFYSAKK 220

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+  
Sbjct: 221 VLTNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLIT 280

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN----------AGCRVLSVGYQGKFIHLKKVC 283
             E+LP+     I   +    EV++   N             + +  G +  F+  + V 
Sbjct: 281 TREVLPEGKV--IIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVI 338

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
               K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +    
Sbjct: 339 FFDGKDKNIIS-NIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLREVVDSLKNIECDV 397

Query: 342 --VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR   +   +   +I +DY H   + E +      I   +II +    GDR     
Sbjct: 398 YNNIGRQNIIELEN--FKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYI 455

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRT 451
             +GKIA   +D  I+ +  + R  +  +I   I  GI     K        +  EAI+ 
Sbjct: 456 KELGKIAGKNSDTIIIKETFDRRGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIKK 515

Query: 452 AIEMLNKQDVLV 463
           AI M  + D++V
Sbjct: 516 AISMAKEGDIIV 527


>gi|332991941|gb|AEF01996.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas sp. SN2]
          Length = 482

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 145/433 (33%), Gaps = 55/433 (12%)

Query: 50  VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
                DG              IVVSSA +  +          I ++    + L+      
Sbjct: 68  KAENVDGMD-----------VIVVSSAINEANPEIITAREQRIPIIRRA-EMLAELMRFR 115

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +G      +AV GT GK++  S +  I  ++        PT  I                
Sbjct: 116 HG------IAVAGTHGKTTTTSLISTIFAQAQYD-----PTFVIGGLLNSAGTNA----R 160

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L ++   ++    +  S               ++ +    TN+  DH+D +    +    
Sbjct: 161 LGRSRYLIAEADESDASFLH------------LQPMVSVVTNIEADHMDTYGGDFSKVKD 208

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNK 288
               F   LP    AI+  DDA  +E+  R   +   +++ G++    +  + +     +
Sbjct: 209 TFVEFLSNLPFYGQAIVCGDDANIQEISPRIGRS---IITYGFEAHNDVRAQDITLSFGQ 265

Query: 289 QQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              T I  E +       L G   V NAL A  +    GID   ++  L     +  RFE
Sbjct: 266 ANFTVIRPEREPLKVTLNLTGNHNVLNALAAIAVATDEGIDDDAIVTALASFGGIGRRFE 325

Query: 348 FVG---TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMG 403
            +G   T+     +  DY H    ++  +   R      R+++V+               
Sbjct: 326 VLGDFKTSVGNVTLVDDYGHHPTEVKATIAAARANWPESRLVMVYQPHRFTRTRDLYEDF 385

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-ML 456
              L   D+ ++ D  P SE P      + +   I              EA+   +  +L
Sbjct: 386 VNVLSTVDVLLLLDVYPASEQPIEGADSKSLCRSIRQRGQIEPVYVGGKEALPAILANIL 445

Query: 457 NKQDVLVVAGKGH 469
            + D+++  G G+
Sbjct: 446 VEGDIVMTQGAGN 458


>gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 830

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 126/368 (34%), Gaps = 38/368 (10%)

Query: 29  KINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSAT 85
            I+ + +DSR +      +F A+   +  G  +IP+   +G    ++    + L +    
Sbjct: 7   TIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGEL 66

Query: 86  IRSN-----------------TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
                                   L+V N  K L   A     K    ++ +TG++GK+ 
Sbjct: 67  KMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTI 126

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+                 S  + ++++  P  ++    LS  +  G+    + 
Sbjct: 127 VKEWLHQLLS--------PDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGIS 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                    R+  IK   G  TN+G  H +   + Q     K+ LF++        I   
Sbjct: 176 EMGEMGALKRM--IKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDC----DVVIYNG 229

Query: 249 DDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           D+   S  V K    A     S     + +++ +V    +   ++      D  F  P  
Sbjct: 230 DNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCIPFI 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            +  + N L     C+ +   +  + E + +L  +  R E     +    I   Y     
Sbjct: 290 DDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSDLA 349

Query: 368 SLEMILKN 375
           SL++ L  
Sbjct: 350 SLDIALDF 357


>gi|303258235|ref|ZP_07344242.1| UDP-N-acetylmuramate--alanine ligase [Burkholderiales bacterium
           1_1_47]
 gi|302858988|gb|EFL82072.1| UDP-N-acetylmuramate--alanine ligase [Burkholderiales bacterium
           1_1_47]
          Length = 462

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 136/416 (32%), Gaps = 45/416 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A    +       N  I VV      L+       G      +AV GT GK+
Sbjct: 65  AGVVVTSTAVHADNPEVVEAKNRNIPVVPRAIM-LAELMRLRQG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I +R GL      PT  I            S   L + L  ++    +  S 
Sbjct: 118 TTTSLITSILERGGLD-----PTFVIGG----RLNAAGSNAKLGQGLYIVAEADESDASF 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +  +    TN+  DH+D +             F + LP    A++ 
Sbjct: 169 L------------NLSPVISVVTNIDEDHMDTYGHDLRNLRKAFTDFIQRLPFYGRAVMC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            +    + ++ +       +L+ G++       + + A   +   T+  +G    +    
Sbjct: 217 IESENVRAILPKITKP---ILTYGFREDAQIRAENIRADGTQMHFTLVRDGAAPEEITVN 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIYVD 361
           LPG   V N+L A G+ + + +    + E L     V  RF    E          +  D
Sbjct: 274 LPGVHNVLNSLAAIGVALTLDVPMEAIKEALATFKGVGRRFAVWGEAQSLKGEKFLVVDD 333

Query: 362 YAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    +   I          R++V F                  L  AD  ++    P
Sbjct: 334 YGHHPTEMAATIAAARGAYPDRRLLVAFQPHRYTRTRDCFEDLVRVLSNADALVLEAVYP 393

Query: 421 RSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E      D   +   I + G    +  GN  E +      + + DV++V G G+
Sbjct: 394 AGEEKIFGADSRSLCRSIRLTGKVEPLFAGNTDEVMELVNNNVKEGDVVLVMGAGN 449


>gi|228909738|ref|ZP_04073561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
 gi|228850027|gb|EEM94858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
          Length = 450

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 142/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKEIPIVTEVELAYRISK---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA   E+          + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMELSADTKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A     + DV+++
Sbjct: 386 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKEGDVVLL 422


>gi|154494018|ref|ZP_02033338.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
 gi|154086278|gb|EDN85323.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
          Length = 453

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 124/363 (34%), Gaps = 41/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I +++G+ +   G               
Sbjct: 103 EFAGRYTD---AKMICITGSNGKTTTTMLTYHILRQAGVDAGLAGNVGN----------- 148

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++        +E SS  LD   +   K       N+  DH+D +   
Sbjct: 149 --------SLALQVAEDPHAVYVIELSSFQLDN--MYDFKADIAILLNITPDHLDRYNYE 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKK 281
            Q Y +AK R+      +++      D   ++E+ KR   A     +  ++     + + 
Sbjct: 199 MQNYVDAKFRIIRNQTAEDAFIFWNDDPIIAREIAKRHPQATLYPFAETHEAGVKGYTED 258

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              I      T ++E    + L  L G   +YN+L +      + I    +   L     
Sbjct: 259 KKIIIETSNGTFTME----EDLLALSGTHNLYNSLASGIASKLVDIHDENLRASLSDFTG 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E V        I    A   NS    L+++ T      +V+   G D+      I
Sbjct: 315 VEHRLEKVARVRGVDYINDSKATNVNSCWYALQSMTT-----PLVLILGGTDKGNDYSEI 369

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +   +  +  +  DN       K+       +P   +  +  EA+  A ++  K D 
Sbjct: 370 EELVKKKVHALIFLGVDN------AKLHGFFDGKVPVIEDARSMEEAVAKAYKLAEKGDT 423

Query: 462 LVV 464
           +++
Sbjct: 424 VLL 426


>gi|288563201|pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
           Glutamate (Murd) Ligase From Streptococcus Agalactiae To
           1.5a
          Length = 451

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 138/426 (32%), Gaps = 59/426 (13%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---- 103
           DG  F         + +G + +  S    L D         P +  +N   +K L     
Sbjct: 39  DGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYXIKNPGIPYNNPXVKKALEKQIP 98

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       ++ +TG++GK++  + + ++    G      G    I   A 
Sbjct: 99  VLTEVELAYLVSE---SQLIGITGSNGKTTTTTXIAEVLNAGGQRGLLAG---NIGFPAS 152

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +          L   LS     GV                    +      TNL   H+D
Sbjct: 153 EVVQAANDKDTLVXELSSFQLXGVKEF-----------------RPHIAVITNLXPTHLD 195

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK  + +         ++  +   SKE+ K          S   +    +
Sbjct: 196 YHGSFEDYVAAKWNI-QNQXSSSDFLVLNFNQGISKELAKTTKATIVP-FSTTEKVDGAY 253

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++     +  + +  SV+         +PG   V NAL    +    GI + ++ E L  
Sbjct: 254 VQDKQLFYKGENIX-SVDD------IGVPGSHNVENALATIAVAKLAGISNQVIRETLSN 306

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R + +G    G   Y D   T+  +    K +        +++   G DR    
Sbjct: 307 FGGVKHRLQSLG-KVHGISFYNDSKSTN--ILATQKALSGF-DNTKVILIAGGLDRGNEF 362

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             ++  I      + +        E   +++         + +  +  +A+  A E+  +
Sbjct: 363 DELIPDITGLKHXVVL-------GESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQ 415

Query: 459 QDVLVV 464
            DV+++
Sbjct: 416 GDVILL 421


>gi|183982420|ref|YP_001850711.1| Mur family ligase [Mycobacterium marinum M]
 gi|183175746|gb|ACC40856.1| ligase, Mur-family [Mycobacterium marinum M]
          Length = 911

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 131/377 (34%), Gaps = 35/377 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I A+TGT+GK++ +  +  I + +G     +G TST +     N            A  
Sbjct: 483 PIAALTGTNGKTTCSRMLAHILKMAGHV---VGQTSTDAVLIDGNVTVKGDMTGPVSAKM 539

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L    V    +E +  G+ +  L       G+  N+  DH+      T       K  +
Sbjct: 540 VLRDPSVDIAVLETARGGIVRSGLGYNFCDVGAVLNVASDHLGLGGVDTLDDLARVKRVV 599

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKKVCAI 285
            E         ++ ADD  + ++   +       ++   + + +            +   
Sbjct: 600 AE---VTRGTVVLNADDEQTLKMAAFSPARQVMYVTRNPEHELVREHIRLGKLAVVLEQG 656

Query: 286 HNKQQVTISVEGKDFDFLFPLPGE--------FQVYNALVAAGLCIAIGIDSALVLEHLE 337
            N  Q+ I   G     ++               V NA+ A G+  A+G     +   L 
Sbjct: 657 VNGDQIVIYDNGTQMPLMWTQLIPATLEGKALHNVENAMFATGMAYALGKTLDQISAGLR 716

Query: 338 KLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGC-GGD 393
                  +        +  G R+ +DY H   ++  ++  +  +   GR IV   C G  
Sbjct: 717 TFDNSFFQSPGRMNVFDEHGFRVILDYGHNEAAVGAMVDLVDRLKPRGRRIVGLTCPGDR 776

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-----RAEIIHGIP--GFIEKGNRI 446
           RD+    I  K+A          DDN R  +P+++      A I  G+        G   
Sbjct: 777 RDEDATAIAAKVAGHFDTYICHRDDNLRDREPDEVPELLRDALIAEGVAPDAISIIGEEE 836

Query: 447 EAIRTAIEMLNKQDVLV 463
           +A+  A+E     D+++
Sbjct: 837 QALDAALEQAQPDDLVL 853


>gi|323099951|gb|ADX23551.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus mycoides]
          Length = 450

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 139/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     GV     
Sbjct: 125 TTTMLAFEMLKEGKKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMGVEMF-- 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                          +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 180 ---------------QPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQT-ETDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +  ++        +        ++K+    +  ++V    +         LP
Sbjct: 224 ADDADVMTLSAQSKGQKVLFSTTKEIEDGAYIKENALYYKGEKVAEVSD-------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L+    V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++          AIVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYF---KHVKAIVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDVIESVDTLGEAVVKAYAHSTDGDVILL 422


>gi|258404875|ref|YP_003197617.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797102|gb|ACV68039.1| UDP-N-acetylmuramate/alanine ligase [Desulfohalobium retbaense DSM
           5692]
          Length = 454

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 110/277 (39%), Gaps = 16/277 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  I    TN+  DH+D++  Q A  ++ +  F   +P     ++  DD   + ++ R  
Sbjct: 171 LLPIMTVVTNVDADHMDFYADQTAIDDSFVH-FMNQIPFYGLNVVCGDDPGVQRLLPRIK 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
                V++ G +       ++   +      +  + +   +     PG   V NAL AA 
Sbjct: 230 RP---VVTYGLEEDNDVRAEILGFNGGSHFRLIYQERPIGELHLKHPGRHNVLNALAAAA 286

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +  G+    V+  L+    V  RFE  G    G  +  DY H    +   L   R   
Sbjct: 287 LALEAGVSEDAVIHGLDCFGGVGRRFETKG-ERDGVLVVDDYGHHPTEIAATLTTARETY 345

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSED--PEKIRAEIIHGI 436
             R +VV      R    + + G+   A + AD+ ++T+  P SE   P    A +  GI
Sbjct: 346 PERRLVVLFQP-HRFTRTQALFGQFCRAFEEADLLLLTEIYPASETPIPGVTGANLAQGI 404

Query: 437 PGF----IEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
                  +E  N  EA + A+  ML   D+L+  G G
Sbjct: 405 RQVSQTRVEFFNDFEAAQEALPGMLRPGDLLITLGAG 441


>gi|33597711|ref|NP_885354.1| cyanphycin synthetase [Bordetella parapertussis 12822]
 gi|33574139|emb|CAE38469.1| cyanphycin synthetase [Bordetella parapertussis]
          Length = 857

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 140/386 (36%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA R  G+ P  ++AV GT+GK++       I   +G     +G T++   +    R+ 
Sbjct: 461 MFAERDDGRIP--VVAVAGTNGKTTTVRLTAHILDCAGHR---VGMTNSDGVYVGKQRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDH--IDYH 220
           T        A   L    V    +E +  G+ +  L   +      TN+G  DH  + Y 
Sbjct: 516 TGDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHLGLGYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM------------KRAHNAGCRVL 268
            T +     K  + + + P +  A++ A D    E+              R H       
Sbjct: 576 STVEDLAVVKRVIVQYVQP-DGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHR 634

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G++  +     + A     +V  ++   D          FQV N + A     A+GID
Sbjct: 635 AQGHRVVYRDGDSLVAAQGGAEVAFALA--DIPLTRGGAIAFQVENTMAALAAAWALGID 692

Query: 329 SALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              +   L             F   + RG  +  DY H  ++++ +++ I T+ + R  V
Sbjct: 693 WDTIRHALAIFVNDAQTAPGRFNVFDFRGATLIADYGHNPDAIQALVRAIDTMPARRRSV 752

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPG------F 439
           V    GDR         +I     D  I+  D   R     ++ A +  G+         
Sbjct: 753 VISGAGDRRDEDLRQQTEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHI 812

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVA 465
            E      AI  A++ L   D+ ++ 
Sbjct: 813 DEIQGEFVAIDAALQRLAPGDLCLIL 838


>gi|77408374|ref|ZP_00785114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77172977|gb|EAO76106.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 451

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 140/426 (32%), Gaps = 59/426 (13%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---- 103
           DG  F         + +G + +  S    L D         P +  +N   +K L     
Sbjct: 39  DGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVKKALEKQIP 98

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       ++ +TG++GK++  + + ++    G      G    I   A 
Sbjct: 99  VLTEVELAYLVSE---SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG---NIGFPAS 152

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +          L   LS     GV                    +      TNL   H+D
Sbjct: 153 EVVQAADDKDILVMELSSFQLMGVKEF-----------------RPHIAVITNLMPTHLD 195

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK  + +  +      ++  +   SKE+ K          S   +    +
Sbjct: 196 YHGSFEDYVAAKWNI-QNQMSSSDFLVLNFNQGISKELAKTTKATIVP-FSTTEKVDGAY 253

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++     +  + + +SV+         +PG   V NAL    +    GI + ++ E L  
Sbjct: 254 VQDKQLFYKGENI-MSVDD------IGVPGSHNVENALATIAVAKLAGISNQVIRETLSN 306

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R + +G    G   Y D   T+  +    K +        +++   G DR    
Sbjct: 307 FGGVKHRLQSLG-KVHGISFYNDSKSTN--ILATQKALSGF-DNTKVILIAGGLDRGNEF 362

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             ++  I      + +        E   +++         + +  +  +A+  A E+  +
Sbjct: 363 DELIPDITGLKHMVVL-------GESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQ 415

Query: 459 QDVLVV 464
            DV+++
Sbjct: 416 GDVILL 421


>gi|301310866|ref|ZP_07216795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
 gi|300830929|gb|EFK61570.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
          Length = 445

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 123/362 (33%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G     +G    + +        
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAG---VDVGLAGNVGN-------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++        +E SS  LD   +   +       N+  DH+D +   
Sbjct: 141 --------SLALQVAEDPHAVYVIELSSFQLDN--MYDFRADIAIILNITPDHLDRYNYE 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +     ++      D   ++E+ KR   A     +  ++       + 
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPKATLYPFAETHENGVKGYTEN 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +  +   T++        L  L G   +YN+L +      + I    +   L     V
Sbjct: 251 NQVVIE---TVNGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGV 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A   NS    L+++ T      +V+   G D+      I 
Sbjct: 308 EHRLEKVLRVRGVDYINDSKATNVNSCWYALQSMTT-----PVVLILGGTDKGNDYSEIE 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +  +  +  DN       K+ A     +    +  +  EA+  A +M +K D +
Sbjct: 363 ELVNKKVHSLIFMGVDNT------KLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|203287763|ref|YP_002222778.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
 gi|201084983|gb|ACH94557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
          Length = 465

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 144/426 (33%), Gaps = 35/426 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI----QAGWIFVAIVGNKEDG 56
           +K++D++      L +   I  +   ++ ++  S DSR I        ++ A  G++ DG
Sbjct: 4   IKIKDIL----DSLKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDG 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +  V S    L       +  +   L+  N    L   A+    K   
Sbjct: 60  FFFVKYLIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRF 119

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I         +     T  +   D              L 
Sbjct: 120 KRIAITGSNGKTTTKEMLYSILSE------RYKTCKTWGNLNSDIG-------LPLSILR 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +      V  S  G      + +       TN+   H+   +  +     K ++  
Sbjct: 167 TKGDEEYAVFEVGISYVGEMNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIIT 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    I+         + + A +    +    ++   + ++    I++K     + 
Sbjct: 227 ---KDTKMLILNESCPQYVYLEEIAKSVNPNINIFYFEFHNLQIRSFSFINDKFSYDFTY 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G D+  L  LPG+  + NA+    L + +G+    +   L       GR E V    + 
Sbjct: 284 KGCDYSIL--LPGKHNICNAISCINLALFLGLSENEIRNGLLHADFQKGRAELVRI--KD 339

Query: 356 GRIYVD-YAHTSNSLEMILKNI--RTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDL 409
             +  D Y    +S   + + I    I   +IIV+      G    +  +  + ++ L  
Sbjct: 340 YLVLNDSYNGNLSSFMALKEMILDLEIKDKKIIVLGSFKELGKFAYEVHKTAIEEVVLMN 399

Query: 410 ADIAIV 415
            D   +
Sbjct: 400 FDKIFL 405


>gi|319947490|ref|ZP_08021722.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
 gi|319746430|gb|EFV98691.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
          Length = 450

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 146/426 (34%), Gaps = 59/426 (13%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---- 103
           DG  F         + +G + +       L D    +    P +   N    + L     
Sbjct: 39  DGKAFEENPAAQSLLEEGIKVVTGGHPLELLDEDFAVMVKNPGIPYTNPMVERALEKGIP 98

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       I+ +TG++GK++  + + ++   +G +    G    I   A 
Sbjct: 99  VLTEVELAYLISE---APIIGITGSNGKTTTTTMIGEVLTAAGQNGLLSG---NIGFPAS 152

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
               T  +   L   LS     G+                           TNL   H+D
Sbjct: 153 QVAQTATAKDTLVMELSSFQLMGIEAF-----------------HPEIAVITNLMPTHLD 195

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK  + + +  K+   + +  D  +K++ ++         +   +     
Sbjct: 196 YHGSFEGYVAAKWAIQKNMTAKDFVVLNFNQD-LAKDLSQQTQATVVPFST--QEKVDGA 252

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +   ++ + +  +  +         +PG   V NAL    +    GID+  + E L  
Sbjct: 253 YLEDGVLYFRGEAVMRAD------QIGVPGSHNVENALATIAVAKLRGIDNQTIQETLSA 306

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R ++V     G + Y D   T+  +    K +    +  +I++   G DR    
Sbjct: 307 FGGVKHRLQYV-AEIEGVKFYNDSKSTN--ILATQKALSGFDNANVILI-AGGLDRGNEF 362

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             ++  I   L  + I+       E  E+++         +++  +  +A R A E+   
Sbjct: 363 DELVPDI-TGLKKMVIL------GESAERVKRAANQAGVTYLDATDVADATRKAYELAEP 415

Query: 459 QDVLVV 464
            D++++
Sbjct: 416 GDIVLL 421


>gi|291530205|emb|CBK95790.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           70/3]
          Length = 511

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 114/309 (36%), Gaps = 23/309 (7%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G     ++ +TG+ GK+S   +++++           G    +    +    T      
Sbjct: 163 NGLPDLTVVGLTGSYGKTSTKFYLEKLL----------GAKYNVLMTPESYNTTMGVVKV 212

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +   L+  ++  +    + A + G  +   D +K   G  T++G  H++  ++       
Sbjct: 213 VRGQLN--ATHEIFLCEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKT 270

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  L + L  K+    +  D+ Y   + K   N      S+G  G   +   +    N  
Sbjct: 271 KFELADSLPDKDGIIFLNYDNEY---IAKHECNKNKVTYSLG-GGTDYYADNISVSENGT 326

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q T+    ++  F   L G   V N + A  +   +G+  A ++  +++L  VP R + +
Sbjct: 327 QFTVHNGNEEKQFATKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECVPHRLQII 386

Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKI 405
              ++   I  D +       +  L  +     G  I+V        +++       G+ 
Sbjct: 387 KGTNK--TIIDDAFNSNPTGAKAALDTLAVF-DGFKILVSPGMVELGEKEYELNKRFGEQ 443

Query: 406 ALDLADIAI 414
           A ++ D  I
Sbjct: 444 AAEICDFVI 452


>gi|319744582|gb|EFV96935.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           agalactiae ATCC 13813]
          Length = 455

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 140/426 (32%), Gaps = 59/426 (13%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---- 103
           DG  F         + +G + +  S    L D         P +  +N   +K L     
Sbjct: 43  DGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVKKALEKQIP 102

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       ++ +TG++GK++  + + ++    G      G    I   A 
Sbjct: 103 VLTEVELAYLVSE---SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG---NIGFPAS 156

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +          L   LS     GV                    +      TNL   H+D
Sbjct: 157 EVVQAADDKDILVMELSSFQLMGVKEF-----------------RPHIAVITNLMPTHLD 199

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK  + +  +      ++  +   SKE+ K          S   +    +
Sbjct: 200 YHGSFEDYVAAKWNI-QNQMSSSDFLVLNFNQGISKELAKTTKATIVP-FSTTEKVDGAY 257

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++     +  + + +SV+         +PG   V NAL    +    GI + ++ E L  
Sbjct: 258 VQDKQLFYKGENI-MSVDD------IGVPGSHNVENALATIAVAKLAGISNQVIRETLSN 310

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R + +G    G   Y D   T+  +    K +        +++   G DR    
Sbjct: 311 FGGVKHRLQSLG-KVHGISFYNDSKSTN--ILATQKALSGF-DNTKVILIAGGLDRGNEF 366

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             ++  I      + +        E   +++         + +  +  +A+  A E+  +
Sbjct: 367 DELIPDITGLKHMVVL-------GESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQ 419

Query: 459 QDVLVV 464
            DV+++
Sbjct: 420 GDVILL 425


>gi|313677380|ref|YP_004055376.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
 gi|312944078|gb|ADR23268.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
          Length = 465

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 119/320 (37%), Gaps = 26/320 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++ +S +  + +         G    I++    N +   S    A  +  
Sbjct: 115 TVAVAGTHGKTTTSSMIAHLLKSGKKDIA--GFLGGITTNYDTNMIMNQSDYKKAIIVVE 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + ++               +K      T+   DH+D +   +    +     E 
Sbjct: 173 ADEFDRSFLT---------------LKPNVAVVTSTDADHLDIYGKLEELKKSFSLFLEN 217

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           + P      IY  D   +E+  +      +  S G     I    V     K    ++++
Sbjct: 218 VNPSG---QIYIKDGLWEEIATK--RIKAKPSSYGLNAGDIRALHVQVKDAKFVFDVTLD 272

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            K    F   +PG   V NA+VA  +   +G+    +LE +     V  RFE+V      
Sbjct: 273 NKVIKGFQLSVPGFHNVENAVVAIAIANQLGLSDKEILEGIRTYQGVKRRFEYV-IQRND 331

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH  + ++ +L ++R +  G+ + V+F            +    +L LAD  +
Sbjct: 332 FVFIDDYAHHPSEIKAMLTSVRALYPGKKVSVLFQPHLYSRTRDFAVEFSQSLSLADEVM 391

Query: 415 VTDDNPRSEDP-EKIRAEII 433
           + D  P  E P E + +EI+
Sbjct: 392 LLDIYPARELPIEGVSSEIL 411


>gi|295098905|emb|CBK87994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           cylindroides T2-87]
          Length = 436

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 150/429 (34%), Gaps = 61/429 (14%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRK--FLSLFASRLYGKHPENILAVTGTSGKSSV 129
           ++   Y     +  I    PI+           +               AVTGT GK++V
Sbjct: 57  LLEKDYPFVVKNPGIPYRVPIVKHFQEAGVPIYTEIEIAYRFAPGFKYAAVTGTDGKTTV 116

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + + ++   +   +   G   T  S                  L+ +  +   +V++E 
Sbjct: 117 TTLLYEMLN-AKEKALVAGNIGTPLS-----------------ELALIHQEETFNVALEL 158

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+  L    +D  +      TNL  DH+DY  + + Y+ +KM +++    ++       D
Sbjct: 159 SNFQLL--GIDTFQPKISVVTNLAPDHLDYMDSLEEYYQSKMLIYKNCNSQDWFIR-NID 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     ++K A N  C+V++     +    K     + K ++   +          + G+
Sbjct: 216 DE---NIVKYAQNIPCQVINFSLTQEADLYKDDTFAYLKDEILFKLSD------LKIVGD 266

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-- 367
           F   NA++AA +   +GID   +   +     V  R E+V T   G R Y D   T+   
Sbjct: 267 FNCGNAMMAACMAYKMGIDLETIQSVIRSFKGVEHRIEYVNT-INGVRFYNDSKATNTHA 325

Query: 368 ---SLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +L    KN+  +  G    + F      D   +             +I T       
Sbjct: 326 ACAALSAFDKNVILLCGGKDKHISFDDLKQYDHKIKHCFSFGQTKDHFKSIFT------- 378

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
                                  +A+  AIE++ + DV++++     +     N E +  
Sbjct: 379 --------------NQTSCQTMKDALDHAIEIIEEGDVILLSPACS-SFDQFKNYEIRGE 423

Query: 484 VDCDIIREI 492
           +  D++ EI
Sbjct: 424 IFKDLVEEI 432


>gi|183983182|ref|YP_001851473.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M]
 gi|229620048|sp|B2HGR5|MURC_MYCMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|183176508|gb|ACC41618.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M]
          Length = 488

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 108/289 (37%), Gaps = 30/289 (10%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ + +AY       F E L      ++ ADD  S  + +R+   
Sbjct: 183 PHVAVVTNIEADHLDFYGSTEAYV-GVFDAFVERLAPGGALVVCADDPGSAALAERSAEL 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-------QVTISVEGKDFDFLFPLPGEFQVYNAL 316
           G RVL  G  G          +  +Q       Q+ ++ E         +PG     NAL
Sbjct: 242 GIRVLRYGSAGHAEAALAATLVSWEQRGTGAVAQIQLAGEADPRSMRLSVPGRHMALNAL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    I +G     VL+ L     V  RFE VGT +   R++ DYAH    +   L+ +
Sbjct: 302 GALLAAIEVGAPVGEVLDGLAGFEGVRRRFELVGT-AESVRVFDDYAHHPTEVRATLEAV 360

Query: 377 RTIT----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           R++     SGR++VVF                 ALD AD   V D     E P       
Sbjct: 361 RSVVRQSGSGRLLVVFQPHLYSRTKAFAAEFGSALDAADEVFVLDVYAAREQP------- 413

Query: 433 IHGIPGFIEKGNRIEAIRTAIEML----------NKQDVLVVAGKGHET 471
           + GI G     +    +R   +               DV+V  G G  T
Sbjct: 414 LTGISGASVAEHVTVPVRYLRDFSAVAEVVAAAAGPGDVVVTMGAGDVT 462


>gi|33602560|ref|NP_890120.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
 gi|33576999|emb|CAE34079.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
          Length = 857

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 140/386 (36%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA R  G+ P  ++AV GT+GK++       I   +G     +G T++   +    R+ 
Sbjct: 461 MFAERDDGRIP--VVAVAGTNGKTTTVRLTAHILDCAGHR---VGMTNSDGVYVGKQRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDH--IDYH 220
           T        A   L    V    +E +  G+ +  L   +      TN+G  DH  + Y 
Sbjct: 516 TGDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHLGLGYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM------------KRAHNAGCRVL 268
            T +     K  + + + P +  A++ A D    E+              R H       
Sbjct: 576 STVEDLAVVKRVIVQYVQP-DGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHR 634

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G++  +     + A     +V  ++   D          FQV N + A     A+GID
Sbjct: 635 AQGHRVVYRDGDSLVAAQGGAEVAFALA--DIPLTRGGAIAFQVENTMAALAAAWALGID 692

Query: 329 SALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              +   L             F   + RG  +  DY H  ++++ +++ I T+ + R  V
Sbjct: 693 WDTIRHALAIFVNDAQTAPGRFNVFDFRGATLIADYGHNPDAIQALVRAIDTMPARRRSV 752

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPG------F 439
           V    GDR         +I     D  I+  D   R     ++ A +  G+         
Sbjct: 753 VISGAGDRRDEDLRQQTEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHI 812

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVA 465
            E      AI  A++ L   D+ ++ 
Sbjct: 813 DEIQGEFVAIDAALQRLAPGDLCLIL 838


>gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74]
 gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74]
          Length = 835

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 135/384 (35%), Gaps = 32/384 (8%)

Query: 35  SDSRHIQ---AGWI-----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +DSR +    A  +     F AI+G   DGH FI     +G    V+  +    +    +
Sbjct: 15  TDSRQVTGHAADSLANEAVFFAILGEHHDGHAFIGDLYRKGIRQFVIERSALTPERREEL 74

Query: 87  R--SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++     VD++ + L   A+    +    ++ +TG++GK+ V  ++ Q+        
Sbjct: 75  ATYADAQFTKVDSSLQTLQTLAAEHRRQFRIPVIGITGSNGKTIVKEWLAQLLA------ 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIK 203
                          +  +  S + +  ++  L+      +     S     Q     I+
Sbjct: 129 --------DEYVIARSPKSYNSQLGVPLSVHQLNESHTMAIFEAGISQTQEMQALEAIIR 180

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G FTN+G  H    +T++     K+RLF            YAD      ++ +A N 
Sbjct: 181 PTIGIFTNIGTAHDQGFRTRKQKVAEKLRLFIH-AGTLIYCTDYADIDEEVNLLLKAVNP 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGL 321
             R ++    G+    +   A     QV+++ +   FD    LP      V N +     
Sbjct: 240 DMRFITWSLTGQKATYQGRIA---GNQVSLTGKNTGFDQPLTLPFTDPASVENLMHCLVT 296

Query: 322 CIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            +++    +A +   L +L  V  R E     +    I   Y +    L++ L+ +    
Sbjct: 297 MLSLRTWSAAELQSRLNRLRPVSMRLEQKEGINNCELIDDSYNNDMVGLQLALRFLNQQG 356

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGK 404
           +    +V      +         +
Sbjct: 357 TRSRRIVILSDVLQTGQPEAEFYE 380


>gi|218460179|ref|ZP_03500270.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli Kim 5]
          Length = 336

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 12/231 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 95  LPADVAVITNIDPEHLDHYGNFDAVRAA-FRQFVENVPFYGFGVMCLDHPEVQSLVGRIE 153

Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD-------FLFPLPGEFQVY 313
           +   ++++ G      +  K V     +    + +  +           + P+PG   + 
Sbjct: 154 DR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRHNIS 211

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A  +   +GI S  + + L     V  RF   G    G +I+ DY H    ++ +L
Sbjct: 212 NATAAIAVANRLGISSEDIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVL 270

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +  R    GRII V                    + AD   +       ED
Sbjct: 271 RAAREACKGRIIAVHQPHRYSRLASLFEEFAACFNDADSIFLAPVYAAGED 321


>gi|239994434|ref|ZP_04714958.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii ATCC
           27126]
          Length = 481

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 146/429 (34%), Gaps = 51/429 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + +  G + IVVSSA + Q+    +     I ++    + L+      +G    
Sbjct: 66  GHR--AENVE-GMDVIVVSSAINEQNPEIIVAREKRIPIIRRA-EMLAELMRFRHG---- 117

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  I   +        PT  I                    ++
Sbjct: 118 --IAVAGTHGKTTTTSLISTIFAEAEYD-----PTFVIGGLLNSAGTNARLGKSRY-LIA 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D +    +        F 
Sbjct: 170 EADESDASFL---------------HLQPMVSVVTNIEADHMDTYGGDFSKVKDTFVDFL 214

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT-I 293
             LP    AI+  DDA  +E+  R   +   +L+ G++       + V     K   T I
Sbjct: 215 SNLPFYGQAIVCGDDANIQEIRPRIGRS---ILTYGFESHNDYRAENVSLSFGKANFTVI 271

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
             E +  D    L G   V NAL A  +    G+D   ++  L     +  RFE +G   
Sbjct: 272 RPEREPLDITLNLTGNHNVLNALAAIAVATDEGVDDDAIIRALASFGGIGRRFEQLGTFT 331

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T+     +  DY H    +   +   R      R+++V+                  L  
Sbjct: 332 TSKGEVCLVDDYGHHPTEVRATIAAARANWPDKRLVMVYQPHRFTRTRDLYEDFVEVLSS 391

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQD 460
            D  ++ D    SE P      + +   I       P ++   + + AI     ++   D
Sbjct: 392 VDALLLLDVYAASEQPIEGADSKALCRSIRQRGQIEPVYVGDKDALPAILA--NIMQDGD 449

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 450 IVMTQGAGN 458


>gi|189501426|ref|YP_001960896.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           BS1]
 gi|226711862|sp|B3EQB7|MURC_CHLPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189496867|gb|ACE05415.1| UDP-N-acetylmuramate/alanine ligase [Chlorobium phaeobacteroides
           BS1]
          Length = 465

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 149/419 (35%), Gaps = 50/419 (11%)

Query: 67  GA-EAIVVSSAYSL---QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           GA + +V SSA +    ++ +A ++   P++  D   + L        G      + V G
Sbjct: 64  GACDVVVYSSAVAASENEEVAAALQKGIPVIKRD---EMLGELMRYKSG------ICVAG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  + +  +   +G S     PT  I   + D +             S +   G 
Sbjct: 115 THGKTTTTAMIATMLIGAGES-----PTVMIGGISDDLKG------------STMVGSG- 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++ +EA     D+  L  +        +L  +H D +   +A  +A    F   +P   
Sbjct: 157 KYMVIEADE--YDRAFLK-LTPSLAVINSLEMEHTDTYADIEALRDA-FVAFANKVPFYG 212

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF- 300
                 D    ++++ R      R+ + G +    +  + +  + ++ + T+  + ++  
Sbjct: 213 RVFCCVDWPEVRKIIPR---MNRRLFTYGIEESADLMARDIQIVGHETRFTVDYQKQEMA 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                 PG   V+NAL A    + +G+    ++  L     +  RF+ +   + G  I  
Sbjct: 270 RVSIAAPGRHNVHNALAAIATGLEMGLPVDSIVSGLASFSGMRRRFQILYGRAGGPVIVD 329

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV---- 415
           DYAH  + ++  +K  R       +I VF                 AL  AD   V    
Sbjct: 330 DYAHHPSEVKAAVKAARAGWPEHEVIAVFQPHLFSRTTAFADEYGWALSNADRVCVADVF 389

Query: 416 -----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                T D P         A ++ G        +R E   T        ++L+  G G 
Sbjct: 390 AAREKTADYPGVSGELVAEAALMAGAQQVSFIPDREELCTTLQGYCVPGNLLLCMGAGD 448


>gi|325981161|ref|YP_004293563.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
 gi|325530680|gb|ADZ25401.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
          Length = 857

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 121/357 (33%), Gaps = 25/357 (7%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I ++S   +   G   T   F     + T        A + LS   V    +E +
Sbjct: 486 QLIASILEQSNQRT---GVACTNGVFIAGQCIDTGDCSGPKSARNILSHPDVDAAVLETA 542

Query: 191 SHGLDQHRLDGIKLIAGSFTNLG-RDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             GL +  L          TN+G  DH+   Y  T +     K  + + +  +   A++ 
Sbjct: 543 RGGLLREGLGFDHCDVAVVTNIGMGDHLGMAYVNTVEELSLVKRVIVQNVKSETGFAVLN 602

Query: 248 ADDAYSKEVMKR--------AHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEG 297
           A D     + +         AHN+   VL+  +    + ++++    +         +  
Sbjct: 603 AADPLVASMAEYCPGSVIFFAHNSHHPVLARHHAQHKRVVYVENDYIVAVSDCSEYRIPL 662

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRG 355
            +          FQ+ N L A G   A+GI  + +   +             F   N R 
Sbjct: 663 NEIPLTKNGTIRFQIENVLAAVGAGWALGIGWSDICAGVTNFVNNTQTAPGRFNLFNYRN 722

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DY H  ++++ ++  I  I S +  VV    GDR         +I  D  D  ++
Sbjct: 723 ATLIADYGHNPDAIQALVSAIENIPSRKRSVVISAAGDRRDEDIRQQTRILGDAFDEVVL 782

Query: 416 TDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIEMLNKQDVLVVA 465
             D   R     ++ + +  G+          E      AI  A+  L   D+ ++ 
Sbjct: 783 YQDKCQRGRADGEVLSLLREGLENARRTQKIREIIGEAIAIDAALSNLQDGDLCLIL 839


>gi|229174579|ref|ZP_04302109.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
 gi|228608884|gb|EEK66176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
          Length = 450

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 142/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLAFEMLKEGQKHPIIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A+  K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKENALCFKGEKVVEVGD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   ++Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKVYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLVPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|225677415|ref|ZP_03788382.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590559|gb|EEH11819.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 504

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 149/426 (34%), Gaps = 54/426 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +       N              + A  + GK+   ++AV+G+SGK+
Sbjct: 86  AQIVVHSSAIESDNVELIAAKNNN----KTVLHRSDILAEIMKGKY---VIAVSGSSGKT 138

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   S + +  I     ++S+  +++        L K+ ++L     +  ++
Sbjct: 139 TTTAMIASIFDHSNIDATVI-VGGILNSYQSNSK--------LGKSDTFLIEADESDGTM 189

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         I       T++  DHIDY+ T     NA  +             + 
Sbjct: 190 L------------KIPAKIAVITSINNDHIDYYGTFDNIKNAFSQFVNNAGSAVLSDSVD 237

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG---------------KFIHLKKVCAIHN---KQ 289
            D   S  +     N   R  ++                        KK  + H+    Q
Sbjct: 238 IDYDASNSITFGFENGSIRASNIKQHANSIEFDVLNNWIPASATCMTKKQVSSHHPLSSQ 297

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            VT+         L    G  +V NAL A  + I +GI  A + + L +   V  RF  +
Sbjct: 298 CVTLGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARRFSLI 357

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N +G ++  DYAH  N +   L   R+IT G++I +                     +
Sbjct: 358 A-NIKGVKLIEDYAHHPNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRIFMM 416

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVL 462
            D  I+T  +P  + P      + I+  +I       +  N    I   I    +  D++
Sbjct: 417 FDYVILTPVHPPEDKPIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPGDIV 476

Query: 463 VVAGKG 468
           +  G G
Sbjct: 477 LFIGAG 482


>gi|150026097|ref|YP_001296923.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772638|emb|CAL44121.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 443

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 126/351 (35%), Gaps = 36/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++    V  + ++ GL+    G      SFA                 
Sbjct: 101 AKTIGITGSNGKTTTTMLVYHLLKQGGLNVGLAGNIG--KSFAW---------------- 142

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRL 233
             +S        +E SS  LD   +   K      TN+  DH+D +  Q + Y  +K R+
Sbjct: 143 -QVSEDTHDFYVLELSSFQLD--GIQKYKPHIAIITNISPDHLDRYDYQYEKYIESKFRI 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 +E   I  ADD      +K  +    +++      +F       A +N    T 
Sbjct: 200 -TMNQTEEDYLIYDADDQAINNWLKN-NKTKAQLVPFSLTKQF-EFGAYEANNNININTN 256

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +           L G+  V NAL A  +   + I  A + E L     V  R E V    
Sbjct: 257 NDPFVMQTSELSLEGKHNVKNALAATSVAQLLKIRKATIRESLADFQGVEHRLEKVLKIQ 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A   N        + ++TS  I +V   G D+      +M  +  ++  I 
Sbjct: 317 NVQYINDSKATNVN---ATFYALDSMTSPTIWIV--GGVDKGNDYSELMELVNKNVKTII 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN      +KI     + +   IE     +A+R A +M  K D +++
Sbjct: 372 CLGVDN------KKIIDAFSNVVDELIEVSTMTDAVRQAYKMAEKGDTVLL 416


>gi|148652337|ref|YP_001279430.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp. PRwf-1]
 gi|189029024|sp|A5WCT9|MURC_PSYWF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148571421|gb|ABQ93480.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp. PRwf-1]
          Length = 476

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 154/430 (35%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + IA  A+ +VVSSA   ++    A +++  P++   +    L       +G  
Sbjct: 70  GHD--SKNIAN-ADVVVVSSAIDRENPEIQAALKAQLPVVRRAD---MLGELMRYRHG-- 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV G  GK++  S +  +   +G       PT  I     +      S       
Sbjct: 122 ----IAVAGAHGKTTTTSLLTMMMTEAGFD-----PTYVIGG-KLNASGKNASLGESRYL 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + ++               +  +A   TN+ +DH+D +        A    
Sbjct: 172 IAEADESDASFLT---------------LHPMAAIVTNIDQDHMDTYGNSFDKLKAAYIQ 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVT 292
           F + +P    A++  DD   KE+     + G  VL+ G +    +    V     K   T
Sbjct: 217 FLQNMPFYGLAVVCGDD---KELFDMIDDIGRPVLTFGLEPHNNVQATNVRVDGTKTHFT 273

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--- 348
           +  + ++  +    +PG+  V NAL A  +    G++   +   L K   V  RFE    
Sbjct: 274 VLRKDREPLELTLNIPGQHNVLNALAAITMATDEGVNDDAIKRALAKFAGVGRRFEQQAC 333

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           V  +     +  DY H    +   +K  R +    R++++F                  L
Sbjct: 334 VAKDDGDVLLIDDYGHHPVEVAATIKAARASYPERRLVMLFQPHRYSRTRDCYDDFVAVL 393

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEI-IHG-IPGFIEKGNRIEAIRTAIEMLNKQ 459
              D+ ++ D     E P      + +   I + G +   +   + +  +     +L   
Sbjct: 394 SQVDVLLLLDVYSAGEAPIVGADTKSLARSIRLRGEVEPVVVDKDELAPVMQ--RVLQAG 451

Query: 460 DVLVVAGKGH 469
           D+L+  G G+
Sbjct: 452 DMLITQGAGN 461


>gi|121611480|ref|YP_999287.1| UDP-N-acetylmuramate--L-alanine ligase [Verminephrobacter eiseniae
           EF01-2]
 gi|166224746|sp|A1WRL2|MURC_VEREI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121556120|gb|ABM60269.1| UDP-N-acetylmuramate--L-alanine ligase [Verminephrobacter eiseniae
           EF01-2]
          Length = 477

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 136/421 (32%), Gaps = 52/421 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+A+V S+A +  +          I VV      L+       G      +A+ GT GK
Sbjct: 64  GADAVVTSTAVTADNPEVLAARAKKIPVVPRALM-LAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +   +GL      PT  I                L    ++       ++ 
Sbjct: 117 TTTTSLVTSVLAEAGLD-----PTFVIGGR-------------LNSVGAHAKLGSGDYIV 158

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA     D   L+ +  +    TN+  DH++ +             F   +P    AI+
Sbjct: 159 VEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFGRLKGAFVDFLHRMPFYGTAIL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGK----DFD 301
             D    +++M       C + S G           + A   +   T+         D  
Sbjct: 216 CVDSPAVRDIM---PGVTCPITSYGLSEDAQVRAVDLRADGARMHFTVQRSNGVTLPDLA 272

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGR 357
               L G   V NAL A  + + + I  A VL  L     V  RF+  G     +     
Sbjct: 273 VQLNLAGAHNVLNALSAIAVAVELNIPDAAVLRALAGFKGVGRRFQSYGQLPAKDGGQFS 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    +   L   R    GR +V+ F                  +  AD  ++T
Sbjct: 333 VIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVRVMGSADAVLLT 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQDVLVVAGK 467
           +     E P  + A     +   +    R+E +  A          E     D+L+  G 
Sbjct: 393 EVYAAGEAP--VVAADGRSLARALRVAGRVEPVFVADVADLPQAIAENARDGDLLLCMGA 450

Query: 468 G 468
           G
Sbjct: 451 G 451


>gi|282857257|ref|ZP_06266497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
 gi|282584907|gb|EFB90235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
          Length = 436

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 147/400 (36%), Gaps = 66/400 (16%)

Query: 72  VVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           VVSS  S +    S     N P+      +  L L A  L G     I+AVTGT+GK++ 
Sbjct: 68  VVSSGVSEKSDAVSMARAKNVPV------QGELDLLAPFLKG----KIIAVTGTNGKTTC 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  + + +GL++   G                         L+  + +    + +E 
Sbjct: 118 TALIAHLLRNAGLNAVSAGNIGN--------------------PLAAHADRSYDAIVMEL 157

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L  H    ++      TNL  DH+D+H + + Y N K ++F               
Sbjct: 158 SSFQL--HWNTQLRPDVAVLTNLAPDHLDWHGSYENYKNDKCKIFL-------------- 201

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLFP 305
               +E     H+     +  G     +    +    + + V +   G+           
Sbjct: 202 -PRQEECYAVTHDVDAFRVPAGRAVCALGRGNLRIDMDGRDVFLVGHGRRRLLFHKSSLK 260

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   + NA ++    +A+          L     +  R E VG   + G +++D +  
Sbjct: 261 LLGSHNLENAAMSCA-AVALAFRDVDPSAGLAGFEALHHRCEPVGE--QNGVLFIDDSKG 317

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +N +  ++  + +I   ++I++   G  + +    +   +  +     ++        + 
Sbjct: 318 TN-VAAVIAALHSINGRKLIIL--GGQGKGESYDELARVVCEETFAAIVIGS------EA 368

Query: 426 EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           EKI A + + G    +   +  EA++ A E+    D +++
Sbjct: 369 EKILAALRVAGYGHAVRAKDMAEAVKKASELAAPGDKVLL 408


>gi|283796967|ref|ZP_06346120.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
 gi|291075380|gb|EFE12744.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
          Length = 465

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 92/438 (21%), Positives = 157/438 (35%), Gaps = 54/438 (12%)

Query: 66  QGAEAIVVSSAYSLQD------------FSATIRSNTPILVVDNTRKFLSLFASRLYG-- 111
           +GA   +   A +++             ++A I  + P            L  + L G  
Sbjct: 53  RGAVIYIGQRAENIRQAEQTGKKIDAVVYTAAIHPDNPEFAAAREAGLPMLSRAVLLGEM 112

Query: 112 -KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            ++    +AV+GT GK++  S + +I   +  +   I     + S   + R+  P   ++
Sbjct: 113 MRNYREAIAVSGTHGKTTTTSMLSEIFLVA-EADPTISVGGILPSIGGNIRVGGPE-FFI 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A  Y +S      ++E                      N+  DH+D+ +      ++ 
Sbjct: 171 TEACEYTNSFLEFFPTIE-------------------VILNIEEDHMDFFKDLADIRSSF 211

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--K 288
            R F +  PK+   +I  +    +E++K   N   RV++ G    F +     +  +  +
Sbjct: 212 TR-FAKKTPKQGAVVINGEIEDWQEIVK---NTEGRVITFGTDRGFDYSAGEISYDSLAR 267

Query: 289 QQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                 + G+  D     + GE  VYNAL AA   +  G+    V   L        RFE
Sbjct: 268 PTFDFYIRGEKRDTLSLGVSGEHNVYNALAAAAAALEAGLSLEAVKRGLLSFTGTKRRFE 327

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G    G  I  DYAH    +   LK  +     RI  VF                 AL
Sbjct: 328 KKGV-LNGVTIIDDYAHHPQEIRASLKTAQNYPHNRIWCVFQPHTYTRTKAFLDEFAEAL 386

Query: 408 DLADIAIVTDDNPRSE-DPEKIRA-EIIHGIPGFIEKG---NRIEAIRTAIEMLN-KQDV 461
            +AD  ++ D     E D   I + +I   I    +K    +  E I   ++      D+
Sbjct: 387 SMADCIVLADIYAARETDTLGISSRDIAEKIERLGKKVWYFHTFEEIEEFLKKSCIHGDL 446

Query: 462 LVVAGKGHETVHIVTNGE 479
           L+  G G     IV  GE
Sbjct: 447 LITMGAGD----IVNVGE 460


>gi|229117409|ref|ZP_04246785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
 gi|228666019|gb|EEL21485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
          Length = 450

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 142/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGRKHPIIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +     F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VESFQPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKI-IFSTAKENEDGACIKDNALYFKGEKVVEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   +VT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---LVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A     + DV+++
Sbjct: 386 VRAAEKVGLDIIESVDTLDEAVVKAYAHSTEGDVILL 422


>gi|165872273|ref|ZP_02216910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227813178|ref|YP_002813187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. CDC 684]
 gi|254754377|ref|ZP_05206412.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Vollum]
 gi|254766036|sp|C3L713|MURD_BACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|164711949|gb|EDR17489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227002721|gb|ACP12464.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V+         LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+    +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSKEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|282878013|ref|ZP_06286821.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
 gi|281299848|gb|EFA92209.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
          Length = 443

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 131/354 (37%), Gaps = 43/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G  +   G                       ++L
Sbjct: 102 SKMICITGSNGKTTTTSLIYHIFKSAGYDAGLAGNIG--------------------RSL 141

Query: 175 S-YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMR 232
           +  ++     +  +E SS  LD   +   K       N+  DH+D +    Q Y +AKMR
Sbjct: 142 ALQVAEDPHEYYIIELSSFQLDN--MYKFKADIAILLNITPDHLDRYDNCMQNYVDAKMR 199

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + +    ++S      DD   K  +K+       C    +  +G   ++++      K  
Sbjct: 200 IIQNQTAQDSFIYWN-DDPIIKRELKKYNIKAVQCPFSELKEKGSIGYIEEGEYTIEKP- 257

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                          L G+  +YN+L A       GI + ++ + L     V  R E V 
Sbjct: 258 ----TPFNMEQEALALTGKHNIYNSLAAGIATDIAGIRNEVIRKSLSDFPGVEHRLEKVC 313

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               GG  Y++ +  +N ++     + ++ +  I+++   G D+     PI   +     
Sbjct: 314 --KVGGVQYINDSKATN-VDACWYALESMRTPTILIL--GGKDKGNDYGPIKDLVKEKCV 368

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  +  DN +  D          GIP   +  +  E +    E+    D +++
Sbjct: 369 ALMYLGADNSKLHDNFDNL-----GIP-VRDTHSMKECVAACYELAKPGDTVLL 416


>gi|170763998|ref|ZP_02636857.2| Mur ligase family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170710779|gb|EDT22961.1| Mur ligase family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 560

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 141/372 (37%), Gaps = 32/372 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK+S +  + +  +  G   +  G   T      +  +          A  
Sbjct: 164 PIVSITGTNGKTSTSRLIYKGFENLG---YFSGLAMTGGIIINNEFVKKGDTTGFYSAKK 220

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+  
Sbjct: 221 VLTNPQVEIGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLIT 280

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN----------AGCRVLSVGYQGKFIHLKKVC 283
             E+LP+     I   +    EV++   N             + +  G +  F+  K V 
Sbjct: 281 TREVLPEGKV--IIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDKNVI 338

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
               K +  IS   KDF F      +  + N LV+      +  +   V++ L+ +    
Sbjct: 339 FFDGKDKNIIS-NIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDV 397

Query: 342 --VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR   +   +   +I +DY H   + E +      I   +II +    GDR     
Sbjct: 398 YNNIGRQNIIELEN--FKIILDYGHNPEAFEELFYLANKIKRNKIISIVSSPGDRLDEYI 455

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRT 451
             +G+IA + +D  I+ +  + R  +  +I   I  GI     K        +  EAI+ 
Sbjct: 456 KELGRIAGENSDTIIIKETFDRRGREELEITNLIKSGINEIENKSVEVLSIIDEEEAIKK 515

Query: 452 AIEMLNKQDVLV 463
           AI M  + D++V
Sbjct: 516 AISMAKEGDIIV 527


>gi|33593956|ref|NP_881600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis Tohama I]
 gi|62900577|sp|Q7VUQ1|MURD_BORPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33564030|emb|CAE43296.1| putative peptidoglycan synthesis protein [Bordetella pertussis
           Tohama I]
 gi|332383374|gb|AEE68221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis CS]
          Length = 510

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 152/449 (33%), Gaps = 62/449 (13%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V      ++     R     +V +      +L       ++   +LA+TGT+GK++V +
Sbjct: 88  LVPHESPTRELLEQARERNVEVVGEIELFARALAGLAESREYRPRVLAITGTNGKTTVTA 147

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             +Q+ +  G+S+   G  S  +  A  + L       +                +E SS
Sbjct: 148 LTRQLIEAGGMSARAAGNISPAALAALMDALDQDDLPQVW--------------VLELSS 193

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+  R   +   A    N+ +DH+D+H   QAY  AK R+    L     AI+  DD 
Sbjct: 194 FQLETTRT--LAPDAAVVLNVTQDHLDWHGDMQAYAQAKARI----LKPARLAIVNRDDP 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE-- 309
            +  +++       R  S G     +       +        + E  DFD   P P    
Sbjct: 248 LAVAMVESLQALNVR--SFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKK 305

Query: 310 --------------------------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                                         NAL A  L  ++ +    +L  L      P
Sbjct: 306 DAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWGPMLRTLRDYAGEP 365

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V +      I         +    L+ +     G+ +V+   G  + Q   P++ 
Sbjct: 366 HRAELVRSIGDVDYINDSKGTNVGATVAALEGL-----GQQVVLIAGGQGKGQDFSPLVP 420

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +      + ++  D        K+      G+P      +  EA+R A E+    D ++
Sbjct: 421 VVRRHARAVVLIGVD---GAAIGKVLE--PTGVPCAA-AADMREAVRRAAELAQPGDAVL 474

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           ++     +  +  N   +  V    +RE+
Sbjct: 475 LS-PACASFDMFRNYPHRGEVFAAEVREL 502


>gi|229162848|ref|ZP_04290805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
 gi|228620730|gb|EEK77599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
          Length = 450

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +          + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSVNTKGQKV-LFSTTKEIEDGAYIKDNALYFKGEKVVEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTLNN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +        IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFAQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A    +  DV+++
Sbjct: 386 VRAAGKAGLDIIESVDTLEEAVGKAYAHSSDGDVILL 422


>gi|304389582|ref|ZP_07371544.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327135|gb|EFL94371.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 499

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 86/421 (20%), Positives = 136/421 (32%), Gaps = 52/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AIVV ++   +D     R+    L + +  + L       +      ++AV G  GK+
Sbjct: 82  ANAIVVVTSAIHEDNPEAARAKALGLEIWHRSQAL------DFCTRSHELVAVAGAHGKT 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S +S +       G           I     D      +   L    +++     +  S 
Sbjct: 136 STSSMMAHSLLDIGADPSFA-----IGGIIADL----GTGARLGSGSAFVIEADESDGSF 186

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S                  TN+  DH+D+  +  A+  A    F   L K    ++ 
Sbjct: 187 LNYS------------PAVEVITNIEPDHLDHWGSAAAFEQA-FVNFTGRLRKGGALVLC 233

Query: 248 ADDAYSKEVMK----RAHNAGCRVLSVGY----QGKFI---HLKKVCAIHNKQQVTISVE 296
           ADDA  K + +    R    G RV+S G+     G  +   H  ++     + QVTI+  
Sbjct: 234 ADDAGVKRLAEQVSARGDADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDA 293

Query: 297 GKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           G+          + G+  + NA  A G    +G D +  +  L        R + VG   
Sbjct: 294 GQQVFHGQLNLRIGGKHMLLNAGGALGAAYVLGADLSQFIAALRTFSGADRRMQPVG-ER 352

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G RIY DY H    +   L+  R +   GR++V F                      D 
Sbjct: 353 DGVRIYDDYGHHPTEIAATLQAARDLAGKGRLLVCFQPHLYSRTYHNVDAFARVFATVDD 412

Query: 413 AIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             V       E P       I   I   +       +   A   A       D L+  G 
Sbjct: 413 LTVCAVYAAREAPIPGVNGNI---ITEHLGKGTYVADMYAAGLHAFRAARPGDFLLFLGA 469

Query: 468 G 468
           G
Sbjct: 470 G 470


>gi|251772197|gb|EES52767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
           ferrodiazotrophum]
          Length = 488

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/391 (17%), Positives = 138/391 (35%), Gaps = 26/391 (6%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            +A+ L+ +    ++A+ GT+GKS+  + V  + + +G S F  G               
Sbjct: 105 EWAASLWDRP---VVAIGGTNGKSTTTALVGHLLKSAGFSPFIGGNFGV---------PF 152

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           +     +  A             +E SS       +           N+  DH+D + + 
Sbjct: 153 SEGVRLMRTARKEGKRDPFDVAVIEVSSFQ--TESMQSFSPDIYLLLNITPDHLDRYDSL 210

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
             Y  AK+     L    +  I  A     +E   R       V S    G  + L    
Sbjct: 211 AQYRLAKLH-VASLFSPSTTVIWNASQDDWREWGPRTKARSVFVGSAELPGPGVVLSGSH 269

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG--IDSALVLEHLEKLHV 341
              +  + + SV    +  +     +   ++ L    L   +G  ID  ++ E +     
Sbjct: 270 LQSHGLRDSFSVSTAGYRLIGGGNLQNLAFSVLATILLGETMGRRIDPGILEEAIASFTG 329

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +P R E V T      +    A    ++E  L    +      +V+   G D+    RP+
Sbjct: 330 LPHRMERVATVRGVTFVNDSKATNVGAVEAAL-AGLSDVGHPHVVLIMGGRDKGGSYRPL 388

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  +   + ++  +       E  EKIR ++   IP   E  +  EA+  A  + +  ++
Sbjct: 389 IPWLKNHVREVVAI------GEAREKIRRDLGKEIP-IEEAQDLFEAVARAFSVADSGEM 441

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           ++++     +  +    E++     + +R +
Sbjct: 442 VLLSPACS-SYDMFHGYEERGERFREAVRRL 471


>gi|78187343|ref|YP_375386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium luteolum DSM 273]
 gi|78167245|gb|ABB24343.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 491

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 76/415 (18%), Positives = 136/415 (32%), Gaps = 45/415 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  +       N  + +V        L    L G++   ++A  GT GK++  
Sbjct: 83  VVVGNAVSRGNEELEYALNERMELV----AMPDLVRRELIGRNTSIVVA--GTHGKTTTT 136

Query: 131 SFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           S +  + +  GL    +  G         + +                 S  G      +
Sbjct: 137 SIIAWLLESGGLKPGFLVGGIPENFGIGCRPSGR---------------SEAGFFVSEGD 181

Query: 189 ASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                    R   +  +       N+  DH D   + +    +  RL   L+P +   I+
Sbjct: 182 EYDTAFFDKRSKFLLYRPDIALINNVEFDHADIFNSLEEIKRS-FRLLVNLIPSKGALIV 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLF 304
             DD  + EV   A  A CR+ + G  +G       +          +  +G     F  
Sbjct: 241 NGDDPVAMEV---AAGARCRLETFGLTEGCDWMAGNIDVGEEGSTFDVYYKGSLLQRFHA 297

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G + + N + +  +    G+    V E L        R E +GT      +  D+AH
Sbjct: 298 PLFGNYNITNTVASIAVATLAGMTLEQVEEGLPGFLRPKRRMETIGTFEGNITLVEDFAH 357

Query: 365 TSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++ + L+ IR     R I+  F    +            A       +V     R E
Sbjct: 358 HPTAIRVTLEAIRERWPRRRILTCFEPRSNTTTRNIFQDELAACFGPAEVVVMGKVHRPE 417

Query: 424 --------DPEKIRAEII-HGIPGFIEKGNRIEA----IRTAIEMLNKQDVLVVA 465
                   D  K++  +   G   F+   +  +     +R   E L   DV+++ 
Sbjct: 418 RYGPGGSLDTGKLKEALEREGKTVFLAGADPDDYPGDIVRFLHENLQPNDVVLML 472


>gi|322376972|ref|ZP_08051465.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
 gi|321282779|gb|EFX59786.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
          Length = 450

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 152/444 (34%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYSNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T     
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTATDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH + + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +KE+  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKELASKTQATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +    + ++I++   G DR      ++  I   
Sbjct: 317 VD-EIKGVKFYNDSKSTN--ILATQKALSGFDNNKVILI-AGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKASVAYVEATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|254411000|ref|ZP_05024778.1| UDP-N-acetylmuramate--alanine ligase [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182355|gb|EDX77341.1| UDP-N-acetylmuramate--alanine ligase [Microcoleus chthonoplastes
           PCC 7420]
          Length = 512

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 132/427 (30%), Gaps = 67/427 (15%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ SSA +    ++ A +    PI    +    L               +AV GT GK++
Sbjct: 115 VICSSAINPINSEYKAAVEGGYPIFHRSDLLAALM---------QDYRSIAVAGTHGKTT 165

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL      PT  +                    L             +
Sbjct: 166 TSSLMGYLLLKTGLD-----PTIVVGGEV--------DAWQGNARLGKSPFLVAEADESD 212

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S        L  +    G  TN+  DH D++Q          ++F +   +    +   
Sbjct: 213 GS--------LAKLAPEIGVITNIELDHPDHYQNLDQVIET-FKIFAD---RCQTIVGCI 260

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDF--DFL 303
           D        +   +     +S   Q   G    + ++          I  EG        
Sbjct: 261 DC-------QTLRSHFTPTISYSLQRTAGADYSVDRIVYQAEGITARI-WEGDQVLGTLQ 312

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + NAL    +   +G++   +   L        RFE  G   +G     DYA
Sbjct: 313 LSLLGQHNLSNALAVVAVGRHLGLEFDAIASALATFEGAKRRFEVRG-ECKGITFVDDYA 371

Query: 364 HTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           H  + ++  L   R     S RI+ +F                 +   AD+ +VTD    
Sbjct: 372 HHPSEIQATLAAARLQVELSRRIVAIFQPHRYSRTLTFLSDFAKSFGDADLVVVTDIYSA 431

Query: 422 SE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH------ 469
            E        E++RA I         +    E  +   ++L   D+ +  G G+      
Sbjct: 432 GEAGVGQITGEQVRAAIADHHERVYYQPTLDEVSQLLAQILQPGDLAIFLGAGNLNQIIP 491

Query: 470 ---ETVH 473
              E+  
Sbjct: 492 QVIESYQ 498


>gi|47565784|ref|ZP_00236823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228987057|ref|ZP_04147182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47557064|gb|EAL15393.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228772651|gb|EEM21092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 450

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 143/397 (36%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  ++V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKGEKVVAVGD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T S   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|256425925|ref|YP_003126578.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
 gi|256040833|gb|ACU64377.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
          Length = 446

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 45/393 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++A+TG++GKS+  +    I + +GL +  +G               
Sbjct: 95  EFAYRYSKD--SKVIAITGSNGKSTTTALTFNIFETAGLHAAMVGNIGL----------- 141

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        +++    +  VE SS  LD  R    K       N+  DH+D +   
Sbjct: 142 --------SYARQIATAPADYYIVEVSSFQLDDIR--DFKPNVAILLNITPDHLDRYDYK 191

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDA---YSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
              Y  +K R+     P++       D     Y KE    +      ++    QG F+  
Sbjct: 192 MANYVASKFRIAMNQGPEDYFVYCIDDPEITNYLKEHTIYSTTIPFTIMEPLKQGGFMAN 251

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++V    N + + +S       +   L G+  +YN++ A      + I    + E L   
Sbjct: 252 EQVNIQVNDEPMIVS------MYDLALKGKHNLYNSMAAGIAGRTMDIRKEKIRESLTSF 305

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +  R E+V T      I    A   NSL   L+++        +V+   G D+     
Sbjct: 306 KSLEHRMEYVATVRGVDFINDSKATNVNSLWFALESME-----HPVVLVMGGVDKGNDYS 360

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            I   +   +  I  +  DN        I+  +    P  I+  +  +A+  A +   K 
Sbjct: 361 AIRDLVKEKVKAIICLGVDN------APIQDALSGYTPVMIDTRSMKDAVNAAFQYAAKG 414

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           DV++++     +  +  N E +     + ++E+
Sbjct: 415 DVVLLS-PACASFDLFKNYEDRGRQFKEAVKEL 446


>gi|300722060|ref|YP_003711340.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628557|emb|CBJ89129.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
          Length = 491

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 154/441 (34%), Gaps = 63/441 (14%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLY 110
            Q IA GA         +++D S       I ++ P +V     +        + A  + 
Sbjct: 58  QQLIALGATIYFNHRPENVRDASVVVASTAIPADNPEIVAAREARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + +  I  ++GL    +      ++          S  YL
Sbjct: 118 YRHG---IAIAGTHGKTTTTAMISGIYAQAGLDPTFVNGGLVKAAGTH---ARLGSSRYL 171

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 172 ---IAEADESDASFL---------------HLQPMVAVVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   KE++ R       V + G+ +   + +        + 
Sbjct: 214 FVNFLHNLPFYGRAVMCIDDPVVKELIPRIGR---YVTTYGFSEEADVRITHYEQKGAQG 270

Query: 290 QVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+S +G  D   +   PG     NA  A  +    GI+ + +L  L +      RF+F
Sbjct: 271 FFTVSRQGFPDLHVVLNAPGCHNALNATAAVAVATEEGINDSAILASLAEFQGTGRRFDF 330

Query: 349 VG------TNSRGGRI--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G +    DY H    ++  +K  R   T  RI+++F           
Sbjct: 331 LGDFSLKYINKKEGSVMLVDDYGHHPTEVDATIKAARAGWTDKRIVMIFQPHRYTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAI 449
                  L   D+ ++ D     E P            IR+    G    I   +  E I
Sbjct: 391 YDDFANVLSQVDVLLMLDVYAAGETPIPGADSRSLCRTIRS---RGKLDPIFVSD-PEQI 446

Query: 450 RTAIEM-LNKQDVLVVAGKGH 469
            + +   +   D+++V G G+
Sbjct: 447 SSILSQFMENNDLVLVQGAGN 467


>gi|330832323|ref|YP_004401148.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
 gi|329306546|gb|AEB80962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
          Length = 449

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 142/416 (34%), Gaps = 54/416 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               +  G   I  S    L D    +    P +  DN    K +            A  
Sbjct: 49  AQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGIPVWTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G    ++     I   A     T  +  
Sbjct: 109 VSD---APIVGITGSNGKTTTTTMIAEVLN-AGNKPAKL--CGNIGYPASSVAQTATAED 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     G                  +  +      TNL   HIDYH T + Y  
Sbjct: 163 TLVMELSSFQLMG-----------------TESFRPHIAVVTNLIASHIDYHGTFEDYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +  E   ++  +   +KE+ ++       + +   +           ++ K
Sbjct: 206 AKWMI-QGQMAAEDFVVLNFNQKEAKELAEQTKATVVPLST--LEVVDGAYLADGKLYFK 262

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +  +         +PG   V NAL    +   +G+D   + E L     V  R +F
Sbjct: 263 GEYIMDAD------QIGVPGSHNVENALATIVVAKLLGVDRQAIQESLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VG    G   Y D   T+  +    K +        +++   G DR      ++  +   
Sbjct: 317 VG-EINGVSFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLVG- 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L  + I+    PR +     +AE+       IE  +  +A R A  +  K D++++
Sbjct: 372 LKKMVILGQSAPRVQRAAD-KAEVE-----TIEALDIADATRKAFAIAEKGDIVLL 421


>gi|223933921|ref|ZP_03625882.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
 gi|223897398|gb|EEF63798.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
          Length = 447

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 142/416 (34%), Gaps = 54/416 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               +  G   I  S    L D    +    P +  DN    K +            A  
Sbjct: 47  AQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGIPVWTEVELAYL 106

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G    ++     I   A     T  +  
Sbjct: 107 VSD---APIVGITGSNGKTTTTTMIAEVLN-AGNKPAKL--CGNIGYPASSVAQTATAED 160

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     G                  +  +      TNL   HIDYH T + Y  
Sbjct: 161 TLVMELSSFQLMG-----------------TESFRPHIAVVTNLIASHIDYHGTFEDYVA 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +  E   ++  +   +KE+ ++       + +   +           ++ K
Sbjct: 204 AKWMI-QGQMAAEDFVVLNFNQKEAKELAEQTKATVVPLST--LEVVDGAYLADGKLYFK 260

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +  +         +PG   V NAL    +   +G+D   + E L     V  R +F
Sbjct: 261 GEYIMDAD------QIGVPGSHNVENALATIVVAKLLGVDRQAIQESLSAFGGVKHRLQF 314

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VG    G   Y D   T+  +    K +        +++   G DR      ++  +   
Sbjct: 315 VG-EINGVSFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLVG- 369

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L  + I+    PR +     +AE+       IE  +  +A R A  +  K D++++
Sbjct: 370 LKKMVILGQSAPRVQRAAD-KAEVE-----TIEALDIADATRKAFAIAEKGDIVLL 419


>gi|323352742|ref|ZP_08087712.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
 gi|322121778|gb|EFX93524.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
          Length = 459

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 140/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q+    G +    G    I   A     T  S
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASS 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G                 ++         TNL   H+DYH + + Y
Sbjct: 170 KDMLVMELSSFQLMG-----------------IEDFHPQIAVITNLMPTHLDYHGSVEEY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +         +          K   A  
Sbjct: 213 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQATVVPFSTTE--------KVDGAYL 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 264 EGDVLTFRGEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGRVNE--IAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA    G+  +++  +  +A   A    +  D++++
Sbjct: 380 G-LKKMVILGQSAARVK-----RAADQAGV-SYLDATDVRDAAHKAFAQADPGDIVLL 430


>gi|157369007|ref|YP_001476996.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia proteamaculans
           568]
 gi|167017284|sp|A8G9S8|MURC_SERP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157320771|gb|ABV39868.1| UDP-N-acetylmuramate--alanine ligase [Serratia proteamaculans 568]
          Length = 492

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 141/420 (33%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPELVAAREARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH++ +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMETYQGDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   +E++ R       + + G+     + ++    +  +   T+S + K        
Sbjct: 231 VDDPVVRELLPRVGR---HITTYGFSDDADVRIESYRQVGPQGHFTLSRQDKPLMTVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGR 357
            PG     NA  A  +    GID A +L  L        RF+F+G          S    
Sbjct: 288 APGRHNALNAAAAVAVATEEGIDDADILRALAGFQGTGRRFDFLGEFPLEPVNGKSGSAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  LK  R      R+++VF                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATLKAARAGWPDKRLVMVFQPHRYTRTRDLYDDFANVLSQVDVLLML 407

Query: 417 DDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D     E      D   +   I   G    I   +      T  ++L   D+++V G G+
Sbjct: 408 DVYSAGETAIPGADSRSLCRTIRSRGKLDPILVSDADTVPETLAQLLQADDLVLVQGAGN 467


>gi|282880606|ref|ZP_06289312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305501|gb|EFA97555.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 443

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 41/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G  +   G                       ++L
Sbjct: 102 SKMICITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIG--------------------RSL 141

Query: 175 S-YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMR 232
           +  ++     +  +E SS  LD   +   K       N+  DH+D +    Q Y +AKMR
Sbjct: 142 ALQVAEDPHEYYIIELSSFQLDN--MYKFKADIAILLNITPDHLDRYDNCMQNYVDAKMR 199

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           + +    K+S      D    +E+ K       C    +  +G   ++++      K   
Sbjct: 200 IIQNQTEKDSFIYWNDDPIIKRELQKYDIKAVQCPFSELKEKGSIGYIEEGQYTIEKP-- 257

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                         L G+  VYN+L A       GI + ++ + L     V  R E V  
Sbjct: 258 ---TPFNMEQEALSLTGKHNVYNSLAAGIATDIAGIRNDVIRKSLSDFSGVEHRLEKVC- 313

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              GG  Y++ +  +N ++     + ++ +    V+   G D+    + I   +      
Sbjct: 314 -KVGGVEYINDSKATN-VDACWYALESMNTPT--VLILGGKDKGNDYQLIKELVKKKCVG 369

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +  DN +  +          GIP   +  +  E +    EM    D +++
Sbjct: 370 LVYLGADNTKLHNNFDSL-----GIP-VRDTHSMKECVEACYEMARPGDTVLL 416


>gi|296166025|ref|ZP_06848476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898624|gb|EFG78179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 444

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 95/306 (31%), Gaps = 30/306 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    V  + +  G      G  +            T    YL      
Sbjct: 41  IIGITGSSGKTSTKDLVAAVLEPLGEVVAPPGSFNNELGHPWTVLRATRRTDYL------ 94

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + + A   G      +      G   N+G  H+    +++A    K  L  +
Sbjct: 95  -------VLEMSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIARTKSEL-PQ 146

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVT 292
            +P     ++  DD     + +       RV    +                   + + T
Sbjct: 147 AVPSSGVVVLNVDDPMVAAMARVTDAWVVRVSRSSHTDSGPSDVWADGVSLDELARPRFT 206

Query: 293 ISVEG----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +         +      + G+ QV NAL A  + +  G     V   LE+   V      
Sbjct: 207 LHAMNAQGTVEVGVQLGVYGDHQVTNALCAGAVALQCGATVEQVATALEQAGPVSRHRMH 266

Query: 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           V T + G  +  D Y    +S+   L+ +  I  G        G    +    ++G++A 
Sbjct: 267 VTTRADGVTVIDDAYNANPDSMRAGLQALAWIAHG-------AGAGERRRSWAVLGEMAE 319

Query: 408 DLADIA 413
              D  
Sbjct: 320 LGDDAV 325


>gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485]
 gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485]
          Length = 811

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 82/479 (17%), Positives = 147/479 (30%), Gaps = 79/479 (16%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL++               + S DSR    G  F+AI   + DGH +IP A+A GA  
Sbjct: 5   LAELLDAGGTLVGPSVTDTFTDWSYDSRLTAPGECFIAIRTARADGHDYIPAALAAGARG 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++        D       N  ++V  + +  L  +AS         ++AVTG  GK+   
Sbjct: 65  VLCRRPPHAAD-------NATVIVCSDPQTVLLRWASNRLRALHPTVVAVTGGIGKTLAR 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +  +   +                +R    S + L  AL+ L +     V   A 
Sbjct: 118 RAIAAVLTQLAPT--------------FQSRRNFNSLLGLPIALARLRAHDRYAVLEFAG 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H      +          T                            P   P  +    
Sbjct: 164 EH--LSPLVAAFPPHLAVIT----------------------------PGADPQTVTLLQ 193

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            +   V+  A             G+F I    +    +         G +     PL G 
Sbjct: 194 QHGVRVLSAAAADC-----YTIAGEFAIRATDISFRRDGVTFIARGPGLELPIFTPLLGP 248

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-- 367
             V  AL A  + ++  +    + + L +L    GR   +    + G + +D +  +   
Sbjct: 249 PGVSAALAAIAVGLSYHMSPEPIQQALTRLEPPAGRLRPL--RGKNGEMIIDDSFNATLP 306

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++   L+ +  + + R I V G   +            +G  A   AD  ++      + 
Sbjct: 307 AMVAALQTLAALPAQRRIAVLGTPAELPAIDPTPMLSDLGGQAARSADYLVLKGTGAATM 366

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-----NKQDVLVVA-GKGHETVHIVT 476
                   +   IP  +   N      TA +M         D+++V+ G G     +V 
Sbjct: 367 VHAA--RLVKPTIPIHVVDTN------TAAQMSLPSDRGAGDLVLVSGGAGERLEQVVA 417


>gi|90418193|ref|ZP_01226105.1| UDP-N-acetylmuramate-alanine ligase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337865|gb|EAS51516.1| UDP-N-acetylmuramate-alanine ligase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 475

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 134/415 (32%), Gaps = 45/415 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          + +V    +   + A  +  +H    +A+ GT GK+
Sbjct: 67  AEVVVVSTAIKRSNPELAAARERLLPIV----RRAEMLAELMRFRH---AIAIGGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSMVATLLD-AGELDPTVVNGGIINAYGTNARMGEGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++ T      A    F E +P     ++ 
Sbjct: 168 ---------GTFLKLPADIAVVTNIDPEHLDHYGTFDKVREA-FCAFVENVPFYGFGVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------DF 300
            D    + ++ R  +          Q   +  + V     K    IS+  +         
Sbjct: 218 LDHPEVQALVSRIEDRRIITYGENLQAD-VRFENVSFTAGKSHFDISIRDRVKGTTERID 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             + P+PG   V NA  A  +   + I +  + + L     V  RF   G       IY 
Sbjct: 277 GLVLPMPGRHNVSNATAAIAVAHRLNISADAIRKGLAGFGGVKRRFTLTGVVGE-VAIYD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +   L   R+  SGR+I V                    + AD  I+     
Sbjct: 336 DYGHHPVEIRAALSAARSSASGRVIAVVQPHRYSRLQALFADFAACFNDADTVIIAPVYA 395

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
             E+P      E +   +  G        +  E +   I  +    D++V  G G
Sbjct: 396 AGEEPIDFVSSEILVERLKLGGHRDARLIDGPEELAPLIHNLAEPGDMVVCLGAG 450


>gi|329849874|ref|ZP_08264720.1| UDP-N-acetylmuramate--alanine ligase [Asticcacaulis biprosthecum
           C19]
 gi|328841785|gb|EGF91355.1| UDP-N-acetylmuramate--alanine ligase [Asticcacaulis biprosthecum
           C19]
          Length = 475

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 136/426 (31%), Gaps = 45/426 (10%)

Query: 59  FIPQA---IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           FI  A   ++ G  A+V S+A    D    + +    + +    + L+           +
Sbjct: 63  FIGHATEHVSDGVCALVYSTAVK-HDNPEMMEARRRRIPLVRRAEMLAELMRL------Q 115

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +    G+    +     I+++  + ++     I       
Sbjct: 116 FSIAVGGTHGKTTTTSMVACLLDAGGMDPTVVNG-GIINNYGTNAKVGDGDWI------- 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      VEA        RL          TN+  +H+D+    +A        F 
Sbjct: 168 ----------VVEADESDGSFLRLKST---LAIVTNIDAEHLDHWGDFEAVKKG-FVDFV 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTIS 294
           E +P    A +  D    + +  +  N       V  Q +   L            V  S
Sbjct: 214 ENIPFYGFAAVCIDHPEVQALAAKVENRRLIPYGVSPQAEVRCLNISFGPEGALFDVQFS 273

Query: 295 VEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             G +         P+ G   V NA  A  +   +G+    V   L     V  RF   G
Sbjct: 274 PTGVEPFTWEKIRLPMTGNHNVSNATAAIAIARELGVTEDAVRTGLAGFGGVKRRFTTTG 333

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G RI  DY H    +  +L   R ++ G++I V                      A
Sbjct: 334 V-VDGIRIIDDYGHHPVEIAAVLTAARQVSQGKVIAVVQPHRYTRLRDLMTEFSSCFHDA 392

Query: 411 DIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKG----NRIEAIRTAI-EMLNKQDVLV 463
           D  IV D     E P    +   ++ G+  F  +     +   A+   +       D++V
Sbjct: 393 DAVIVADVYSAGETPIDGVSKTALVEGLHRFGHRNAVALDGPAALAGLVAAEARPGDLVV 452

Query: 464 VAGKGH 469
             G G 
Sbjct: 453 CLGAGD 458


>gi|256372027|ref|YP_003109851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008611|gb|ACU54178.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 437

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 144/418 (34%), Gaps = 71/418 (16%)

Query: 48  AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           AIVG + D               +VVS     +     +  + P++      +   L A+
Sbjct: 63  AIVGARFD--------------LVVVSPGIRTERVE-RLGLDGPVI---GELELGYLLAA 104

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                    I AVTGT+GKS+V +    +     +++  +G                   
Sbjct: 105 -------APITAVTGTNGKSTVTTLTASMLGDGAVAAGNLGTP----------------- 140

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 LS ++  G   + VE SS  L        +    +  NL  +H+DYH + +AY 
Sbjct: 141 ------LSAVADSGARRLVVEVSSFQLVWA--PTFRASVATVLNLTPNHLDYHGSFEAYR 192

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK RL E L P +       + A     + R      R  S   +     ++    +  
Sbjct: 193 AAKARLIERLAPGDVAVWPVGEGAVDAIAIPR--GVEVRTFSATARDADYRVEHGALVGP 250

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  + VE               V N L A  L  A G +         +   +  R +
Sbjct: 251 DGRTLVRVE------ELGRRAPHDVANMLAAWALAEASGAELERARRVAREFRGLAHRLQ 304

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V    RGG  YVD +  +   E  +  +R+       VV   GG         +  +A 
Sbjct: 305 VVAV--RGGLTYVDDSKATTP-EAAVAAVRSFDR----VVLIAGGRTKGTGFERLRDVAE 357

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +A +  +       E   ++ A++   +P  +E  +  EA+  A E      V+++A
Sbjct: 358 RIAGVVAI------GESAHRVVADLGDAVPWIVEANSMDEAVAVASERALPGTVVLLA 409


>gi|332557534|ref|ZP_08411856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275246|gb|EGJ20561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 477

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 162/464 (34%), Gaps = 58/464 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +FVA+  ++ DGH F+ +A+A+GA A +VS           +  + 
Sbjct: 25  TGVSIDTRSLGPGDLFVALA-DQRDGHAFVAEALARGAAAALVSR------RPGGLPEDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++ VTG+ GK+S    ++             G  
Sbjct: 78  PLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKTSTKEMLRATL----------GGQ 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+ +           P+ LA+  + +       V +  +  G         +      T
Sbjct: 128 GTVHAAEASYNNHWGVPLTLARMPADV---DFAVVEIGMNHPGEIAPLSRLARPHLALIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++   +  A    K  + E L P    AI+ A    S  +  RA   G   ++ 
Sbjct: 185 TVAAAHLEAFDSLAAIAEEKAAILEGLEP-GGRAILPAGLEVSPVLAARAAALGVPAVTF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L  +           S  G  F F    PG     NAL       A+G+D 
Sbjct: 244 GQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATLAAAEALGLDL 303

Query: 330 ALVLEHL-----EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-- 381
            +    L             R      +  G  +  D +     S+   L+ +  +    
Sbjct: 304 TIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASLELLAAMAPTD 363

Query: 382 -------GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEI 432
                  GR I + G   +    +  +   +A     A+IA+V    PR           
Sbjct: 364 GIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR----------- 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIE-------MLNKQDVLVVAG-KG 468
           +  +   + +  R E + TA E       +++  D+++V G KG
Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|315655254|ref|ZP_07908155.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
 gi|315490509|gb|EFU80133.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
          Length = 499

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 85/419 (20%), Positives = 136/419 (32%), Gaps = 52/419 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AIVV ++   +D     R+ +  L + +  + L          H   ++AV G  GK+S 
Sbjct: 84  AIVVVTSAIHEDNPEAARAKSLGLEIWHRSQAL----DFCTRSH--ELVAVAGAHGKTST 137

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +       G           I     D      +   L    +++     +  S   
Sbjct: 138 SSMMAHALLDIGADPSFA-----IGGIIADL----GTGARLGSGSAFVIEADESDGSFLN 188

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S                  TN+  DH+D+  +  A+  A    F   L K    ++ AD
Sbjct: 189 YS------------PAVEVITNIEPDHLDHWGSAAAFEQA-FVDFTGRLRKGGALVLCAD 235

Query: 250 DAYSKEVMKRAHNAG----CRVLSVGY----QGKFI---HLKKVCAIHNKQQVTISVEGK 298
           DA  K + ++    G     RV+S G+     G  +   H  ++     + QVTI+  G+
Sbjct: 236 DAGVKRLAEQVSARGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQ 295

Query: 299 DF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     + G+  + NA  A G    +G+D    +  L        R + VG    G
Sbjct: 296 QVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVG-ERDG 354

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            RIY DY H    +   L+  R +   GR++V F                      D   
Sbjct: 355 VRIYDDYGHHPTEIAATLQAARDLAGKGRLLVCFQPHLYSRTYHNVDAFARVFATVDDLT 414

Query: 415 VTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           V       E P       I   I   +       +   A   A       D L+  G G
Sbjct: 415 VCAVYAAREAPIPGVNGNI---ITEHLGKGTYVADMYAAGLHAFRAARPGDFLLFLGAG 470


>gi|212692810|ref|ZP_03300938.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|237724907|ref|ZP_04555388.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D4]
 gi|212664599|gb|EEB25171.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|229436645|gb|EEO46722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
           5_1_36/D4]
          Length = 444

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 123/362 (33%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I +++G++    G               
Sbjct: 95  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG------------ 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++     +  +E SS  LD   +           N+  DH+D +   
Sbjct: 140 -------QSLAYQVAEYNYDYYVIELSSFQLDN--MYKFHANIAVLMNITPDHLDRYDHQ 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P ++      D    +E+ K   +      +   +       + 
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPVIQRELHKYGIHGHYYPFAERKEEGTAAYVEQ 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++  + +  ++E ++      L G   ++N++ A       GI    + E L     V
Sbjct: 251 DKVYFTEPIAFNMEQEE----LALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGV 306

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A   NS    L++++T       ++   G D+      I 
Sbjct: 307 EHRLEKVCRVRGVDYINDSKATNVNSCWYALQSMKT-----KTILILGGKDKGNDYNEIA 361

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      +  +   N      EK+ A          +  +  +A+  A  M  K + +
Sbjct: 362 DLVKEKCTGLIYMGLHN------EKLHAFFDKFGLPVADVQSMKDAVDAAYRMAKKGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|229157491|ref|ZP_04285568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
 gi|228625941|gb|EEK82691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
          Length = 450

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 143/397 (36%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQGAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  ++V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKGEKVVAVGD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T S   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|126461545|ref|YP_001042659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103209|gb|ABN75887.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 477

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 162/464 (34%), Gaps = 58/464 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +FVA+  ++ DGH F+ +A+A+GA A +VS           +  + 
Sbjct: 25  TGVSIDTRSLGPGDLFVALA-DQRDGHAFVAEALARGAAAALVSR------RPEGLPEDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++ VTG+ GK+S    ++             G  
Sbjct: 78  PLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKTSTKEMLRATL----------GGQ 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T+ +           P+ LA+  + +       V +  +  G         +      T
Sbjct: 128 GTVHAAEASYNNHWGVPLTLARMPADV---DFAVVEIGMNHPGEIAPLSRLARPHLALIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++   +  A    K  + E L P    AI+ A    S  +  RA   G   ++ 
Sbjct: 185 TVAAAHLEAFDSLAAIAEEKAAILEGLEP-AGRAILPAGLEVSPVLAARAAALGVPAVTF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L  +           S  G  F F    PG     NAL       A+G+D 
Sbjct: 244 GQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATLAAAEALGLDL 303

Query: 330 ALVLEHL-----EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-- 381
            +    L             R      +  G  +  D +     S+   L+ +  +    
Sbjct: 304 TIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASLELLAAMAPTD 363

Query: 382 -------GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEI 432
                  GR I + G   +    +  +   +A     A+IA+V    PR           
Sbjct: 364 GIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR----------- 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIE-------MLNKQDVLVVAG-KG 468
           +  +   + +  R E + TA E       +++  D+++V G KG
Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|226357454|ref|YP_002787193.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319444|gb|ACO47439.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 886

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 142/382 (37%), Gaps = 36/382 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GKS+ A  V  I + +G  +   G T++   +    ++ T        A  
Sbjct: 479 PIISITGTNGKSTTARMVAHIMRHAGKVT---GLTTSNGIYVDGEQILTGDTTGPKSAKV 535

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            LS + V    +E +  G+ +  L   +   G+  N+  DH+      T +     K  L
Sbjct: 536 ILSDRNVEVAVLETARGGILREGLGFDRCDVGAVLNIQPDHLGVKGIDTVEDLAWVKS-L 594

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH------- 286
             E++     +++ ADD  +  +  +A          G      HL+   A         
Sbjct: 595 IVEVVTDSGTSVLNADDPLTWAMRHQARGRLALFSMQGGPTAPEHLRAHIADGGLALVRE 654

Query: 287 ---NKQQVTISVEG--------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                 ++ +  +G        +D         +  + NAL AA + +A  I+  ++   
Sbjct: 655 GTVVGDELVLYEDGQRTPLMRARDIPATLGGFAKVNIQNALAAAAMAVAQHIELPVIRAA 714

Query: 336 LEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCG 391
           L        +        +    R+ +DYAH  + LE    L        GR+I V G  
Sbjct: 715 LSSFSTSFEQSPGRLNLYDGHPFRVLLDYAHNPSGLEYLGDLVAHLRPARGRVIGVLGVA 774

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-RAEIIHGIPGFIEKGNRI---- 446
           GDR       MG++A    D  I+ +D+ R   P       +  G         R+    
Sbjct: 775 GDRRDADMRQMGELAARAFDELIIREDDLRRGRPAGEGARHVAEGALASGFPAERLHTIL 834

Query: 447 ---EAIRTAIEMLNKQDVLVVA 465
              EA+  A+ M  + D++V+ 
Sbjct: 835 PEPEAVSAALSMARQGDLVVIL 856


>gi|49479386|ref|YP_037974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118479132|ref|YP_896283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196035806|ref|ZP_03103208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196038844|ref|ZP_03106152.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225865894|ref|YP_002751272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228935228|ref|ZP_04098054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947632|ref|ZP_04109922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123426|ref|ZP_04252630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|301055403|ref|YP_003793614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           anthracis CI]
 gi|60390446|sp|Q6HEQ2|MURD_BACHK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158512491|sp|A0RHT3|MURD_BACAH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766037|sp|C1EPS6|MURD_BACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49330942|gb|AAT61588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418357|gb|ABK86776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|195991455|gb|EDX55421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196030567|gb|EDX69166.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225789057|gb|ACO29274.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228660202|gb|EEL15838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|228812152|gb|EEM58483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824393|gb|EEM70199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|300377572|gb|ADK06476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 450

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 142/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V+         LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|322374681|ref|ZP_08049195.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
 gi|321280181|gb|EFX57220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
          Length = 450

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 152/444 (34%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               +  G + +       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEDGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGIQVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T  +  
Sbjct: 109 ISD---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTATAKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH + + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +KE+  +         S   +    +L+        
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKELASKTQATVVP-FSTQEKVDGAYLEDGQLCFRG 263

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + V  + E         +PG   V NAL A  +    G+D+  + E L     V  R +F
Sbjct: 264 EVVMAASE-------IGVPGSHNVENALAAIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VD-EIQGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         +++  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAAEKAGVTYVDATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|229019116|ref|ZP_04175950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
 gi|229025359|ref|ZP_04181777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228735944|gb|EEL86521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228742132|gb|EEL92298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
          Length = 450

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 138/397 (34%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     GV     
Sbjct: 125 TTTMLAFEMLKEGKKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMGVEMF-- 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                          +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 180 ---------------QPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQT-ETDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +  ++        +        ++K+       ++V    +         LP
Sbjct: 224 ADDADVMTLSAQSKGQKVLFSTTKEIEDGAYIKENALYFKGEKVAEVSD-------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L+    V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++          AIVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYF---KHVKAIVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDVIESVDTLGEAVVKAYAHSTDGDVILL 422


>gi|229186153|ref|ZP_04313322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
 gi|228597329|gb|EEK54980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
          Length = 450

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 143/397 (36%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    ++  ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-EDDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V+         LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|294635010|ref|ZP_06713527.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
 gi|291091609|gb|EFE24170.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
          Length = 476

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 134/419 (31%), Gaps = 47/419 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A +  +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 68  ASVVVVSTAIAADNPEIIAAREARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 121 TTTAMVASIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 172

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
                         ++ +    TN+  DH+D YH   +         F   LP    A++
Sbjct: 173 -------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVL 218

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   +E++ R                    +   +           +          
Sbjct: 219 CIDDPVIRELLPRV-GRHVTTYGFSEDADVRIEEYRQSGAQGGFFLCRQDRPRLAVTLNA 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI-- 358
           PG     NA  AA + +  GID   +L  L        RF+F+G       N++ G++  
Sbjct: 278 PGRHNALNAAAAAAVAMEEGIDDEAILRALSGFQGTGRRFDFLGEFSLQHVNNQPGQVML 337

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    ++  +K  R      R+++VF                  L   D+ ++ D
Sbjct: 338 VDDYGHHPTEVDATIKAARAGWPDRRLVMVFQPHRFTRTRDLYDDFANVLSQVDVLLMLD 397

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E P        +   I   G    +         +   + L   D+++  G G+
Sbjct: 398 VYPAGESPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQVLAQFLQDGDLILTQGAGN 456


>gi|269137996|ref|YP_003294696.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
 gi|267983656|gb|ACY83485.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
          Length = 491

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 134/419 (31%), Gaps = 47/419 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A +  +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 83  ASVVVVSTAIAADNPEIIAAREARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 136 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
                         ++ +    TN+  DH+D YH   +         F   LP    A++
Sbjct: 188 -------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVL 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   +E++ R                    +               +          
Sbjct: 234 CIDDPVIRELLPRV-GRQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRLAVTLNA 292

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI-- 358
           PG     NA  AA +    GID   +L  L        RF+F+G       N++ G++  
Sbjct: 293 PGRHNALNAAAAAAVASEEGIDDEAILRALGGFQGTGRRFDFLGEFSLQHVNNKPGKVML 352

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    ++  +K  R      R+++VF                  L   D+ ++ D
Sbjct: 353 VDDYGHHPTEVDATIKAARAGWPDRRLVMVFQPHRFTRTRDLYDDFANVLSQVDVLLMLD 412

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E P        +   I   G    +         +T  + L + D+++  G G+
Sbjct: 413 VYPAGEHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFLQEGDLILTQGAGN 471


>gi|229092960|ref|ZP_04224092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
 gi|228690414|gb|EEL44199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
          Length = 450

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 142/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V+         LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|239983058|ref|ZP_04705582.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291454889|ref|ZP_06594279.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291357838|gb|EFE84740.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
          Length = 467

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 141/414 (34%), Gaps = 42/414 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VVSSA    +      +   I VV  +       A+ + G  P   +AV GT GK++ 
Sbjct: 72  AVVVSSAIRPDNPELVRAAELGIPVVHRSDA----LAALMDGTRP---IAVAGTHGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +       G             S+A    L  P    L                 + 
Sbjct: 125 TSILAVSLAALGRDP----------SYAIGGDLDAPGSNALHGTGEIFV---AEADESDR 171

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S H                  N+  DH   + + +    +    F   +      +I AD
Sbjct: 172 SFHKY--------TPEVAIVLNVELDHHANYASIEEIHES-FETFAARIVPGGTLVISAD 222

Query: 250 DAYSKEVMKRAHN---AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++E+ +R       G  V + G      + +  +     + +VT+ ++G +  F   
Sbjct: 223 HEGARELTRRLAAKGLPGVTVRTYGEAADADVRVVSIVPQGLRSEVTVRIDGAELTFGVS 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG     NA+ A    +A+GI +A +   +     V  R +  G  + G ++   YAH 
Sbjct: 283 VPGRHYALNAVAALTAAVALGIPAAEMAPAIAAYTGVKRRLQLKGEAA-GVQVIDSYAHH 341

Query: 366 SNSLEMILKNIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            + +   L+ IR       R++V+F         +       AL LAD ++V +  P  E
Sbjct: 342 PSEMTADLEAIRGAVAADARLLVLFQPHLFSRTQELGKEMGQALGLADASVVLEIYPARE 401

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DP        I               +R  A      M    D+++  G G  T
Sbjct: 402 DPIPGVTSALIIDAARAAGADVTALADRSAAASVLAGMAKPGDLVLTMGAGDVT 455


>gi|88858803|ref|ZP_01133444.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
 gi|88819029|gb|EAR28843.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
          Length = 478

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 141/448 (31%), Gaps = 52/448 (11%)

Query: 48  AIVGNKEDGHLFIPQAIAQ-----GAEAIVVSSA-----YSLQDFSATIRSNTPILVVDN 97
           A  G K  G      A+ +     GA+  +   A      S+   S+ I    P ++   
Sbjct: 34  AYEGYKITGSDIADNAMTKRLAGIGAKIFIGHQASNVDDASVVVVSSAIDQKNPEIIAAQ 93

Query: 98  ------TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                  R+   + A  +  +H    +A+ GT GK++  S +  +   +     ++ PT 
Sbjct: 94  HNRTPIVRRA-EMLAELMRFRHG---IAIAGTHGKTTTTSLIASVFAEA-----ELDPTF 144

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            I                    ++       + +                ++ +    TN
Sbjct: 145 VIGGLLNSAGTNAKLGSSRF-LIAEADESDASFL---------------HLQPMVSVITN 188

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  DH+D +Q            F   LP    A++  DD   KE++ R            
Sbjct: 189 IEADHMDTYQGDFENMKDTYIEFIHNLPFYGLAVVCCDDEVVKELIPRFGRKFL-TYGQS 247

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            Q  +     V + +  Q V    +G   +    +PG     NA  A  +    GI    
Sbjct: 248 SQADYRMSDFVQSGNTSQFVVTDKQGHSLNVKLNMPGLHNALNATAAIAVAKDEGIADDA 307

Query: 332 VLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
           ++  L K   +  RFE  G   T      +  DY H  + +   +K  R      R+++ 
Sbjct: 308 IIRALAKFEGIGRRFEHYGNFATERGDIMLVDDYGHHPSEVAATIKAARQGWPDKRLVMA 367

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIE 441
           +                  L   D+ ++ +  P  E      D + +   +       + 
Sbjct: 368 YQPHRYTRTRDLYEEFVQVLAEVDLLLLLEVYPAGEQAIAGADSKSLCRSLRQRGKEPVY 427

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E      E+L   D+++  G G+
Sbjct: 428 ISGPSELTSVLSEVLQGNDLVLTQGAGN 455


>gi|332670128|ref|YP_004453136.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332339166|gb|AEE45749.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 474

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 92/435 (21%), Positives = 164/435 (37%), Gaps = 46/435 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G +   GH    + +A  A+ +VVSSA    +          + V+  +    +L A R 
Sbjct: 52  GVRVHVGHD--AEHVAD-ADTLVVSSAVRESNPELAAARARGLRVLHRSEALAALMADR- 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSP 167
                 + +AV G  GK++ ++        +G   S    G   T+      +R      
Sbjct: 108 ------DAVAVAGAHGKTTTSAMAATALLHAGADPSFAIGGTVLTVDGALGGSRDGRGP- 160

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  ++++    +  S  A             + +    TN+  DH+D++ +++A+ 
Sbjct: 161 -------AFVAEADESDGSFLAY------------EPLVAVVTNVEPDHLDHYGSREAFE 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG----CRVLSVGYQ-GKFIHLKKV 282
           +A    F   +      +  ADD  +  +++ A         RV++ G   G  + + + 
Sbjct: 202 DA-FVAFVRRVRPGGVLVACADDEGAARLVETAAADLAAAGVRVVTYGRSAGAEVRVGEQ 260

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                   V ++ +         +PG     +A  A     A+GI +      L      
Sbjct: 261 RPADGGWDVDLTTDATTVTVHLAVPGTHNALDAAAAWAAVRALGIPAEEAARALGAFRGT 320

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPI 401
             RFE  GT   G R+  DYAH    +  +L+  RT+   GR++V+F             
Sbjct: 321 GRRFEDRGTAG-GVRVVDDYAHHPTEVAALLRAARTVAGDGRVLVLFQPHLYSRTRTFAR 379

Query: 402 MGKIALDLADIAIVTDDNPRSEDPE--KIRAEIIHGIP---GFIEKGNRIEAIRTAIEML 456
               ALDLAD+A+VTD     EDP+     A ++  +P         +R++A R      
Sbjct: 380 EFGAALDLADVAVVTDVYAAREDPDPSVTGALLVEHVPTPGRATFVADRVDAARAVAAAA 439

Query: 457 NKQDVLVVAGKGHET 471
              D+L+  G G  T
Sbjct: 440 RPGDLLLTVGAGDVT 454


>gi|229075669|ref|ZP_04208651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
 gi|229098383|ref|ZP_04229328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|229104475|ref|ZP_04235142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228678917|gb|EEL33127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228685000|gb|EEL38933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|228707445|gb|EEL59636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
          Length = 450

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 142/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGRKHPIIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +     F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VESFQPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKI-LFSTAKENEDGACIKDNALYFKGEKVVEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   +VT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---LVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A     + DV+++
Sbjct: 386 VRAAEKVGLDIIESVDTLDEAVVKAYAHSTEGDVILL 422


>gi|30263914|ref|NP_846291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Ames]
 gi|47529344|ref|YP_020693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186762|ref|YP_030014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Sterne]
 gi|52141576|ref|YP_085253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus E33L]
 gi|167636572|ref|ZP_02394866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|167641133|ref|ZP_02399388.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|170688845|ref|ZP_02880048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|170709237|ref|ZP_02899658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|177655544|ref|ZP_02936954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190565997|ref|ZP_03018916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218905043|ref|YP_002452877.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228916550|ref|ZP_04080116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928961|ref|ZP_04091993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229604216|ref|YP_002868148.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
 gi|254721447|ref|ZP_05183236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. A1055]
 gi|254735953|ref|ZP_05193659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743848|ref|ZP_05201531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Kruger B]
 gi|254756744|ref|ZP_05208773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Australia 94]
 gi|60389927|sp|Q636B4|MURD_BACCZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390084|sp|Q81WC9|MURD_BACAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711879|sp|B7JK00|MURD_BACC0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766035|sp|C3P682|MURD_BACAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30258558|gb|AAP27777.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. Ames]
 gi|47504492|gb|AAT33168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180689|gb|AAT56065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. Sterne]
 gi|51975045|gb|AAU16595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           E33L]
 gi|167510913|gb|EDR86304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|167527995|gb|EDR90801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|170125844|gb|EDS94750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|170667200|gb|EDT17960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|172080073|gb|EDT65170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190562916|gb|EDV16882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218537488|gb|ACK89886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228830768|gb|EEM76373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843129|gb|EEM88211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268624|gb|ACQ50261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
          Length = 450

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 142/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V+         LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|331001071|ref|ZP_08324702.1| UDP-N-acetylmuramate--L-alanine ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569376|gb|EGG51154.1| UDP-N-acetylmuramate--L-alanine ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 462

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 136/416 (32%), Gaps = 45/416 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A    +       N  I VV      L+       G      +AV GT GK+
Sbjct: 65  AGVVVTSTAVHADNPEVVEAKNRNIPVVPRAIM-LAELMRLRQG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I +R GL      PT  I            S   L + L  ++    +  S 
Sbjct: 118 TTTSLITSILERGGLD-----PTFVIGG----RLNAAGSNAKLGQGLYIVAEADESDASF 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +  +    TN+  DH+D +             F + LP    A++ 
Sbjct: 169 L------------NLSPVISVVTNIDEDHMDTYGHDLRNLRKAFTDFIQRLPFYGRAVMC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            +    + ++ +       +L+ G++       + + A   +   T+  +G    +    
Sbjct: 217 IESENVRAILPKITKP---ILTYGFREDAQIRAENIRADGTQMHFTLVRDGAAPEEITVN 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIYVD 361
           LPG   V N+L A G+ + + +    + E L     V  RF    E          +  D
Sbjct: 274 LPGVHNVLNSLAAIGVALTLDVPMEAIKEALATFKGVGRRFAVWGEAQSLKGEKFLVVDD 333

Query: 362 YAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    +   I          R++V F                  L  AD  ++    P
Sbjct: 334 YGHHPTEMAATIAAARGAYPDRRLLVAFQPHRYTRTRDCFEDLVRVLSNADALVLEAVYP 393

Query: 421 RSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E      D   +   I + G    +  GN  E +      + + DV++V G G+
Sbjct: 394 AGEEKIFGADSRSLCRSIRLTGKVEPLFAGNTDEVMELINNNVKEGDVVLVMGAGN 449


>gi|228941001|ref|ZP_04103559.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973932|ref|ZP_04134507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980521|ref|ZP_04140831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228779341|gb|EEM27598.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228785798|gb|EEM33802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818680|gb|EEM64747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326941682|gb|AEA17578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 450

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISK---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +          + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSADTKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGTSNEAITIVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A     + DV+++
Sbjct: 386 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKEGDVVLL 422


>gi|269956085|ref|YP_003325874.1| UDP-N-acetylmuramate/alanine ligase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304766|gb|ACZ30316.1| UDP-N-acetylmuramate/alanine ligase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 493

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 85/419 (20%), Positives = 146/419 (34%), Gaps = 40/419 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVSSA    +          I V+  ++   SL          +  +AV G  GK++ +
Sbjct: 82  VVVSSAVRETNPELAAARAAGIRVLHRSQALASLM-------LGQRAVAVAGAHGKTTTS 134

Query: 131 SFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           + +  + + +G+  SF IG T  + +               +  L          V+   
Sbjct: 135 AMIATVLRAAGVDASFAIGGTVRLRAADGTTTAVPGGHRGTSDVL----------VAEAD 184

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ----AYFNAKMRLFEELLPKESPAI 245
            S G   +            TN+  DH+D++ T++    A+     RL           +
Sbjct: 185 ESDGSFLNY----APTIAVVTNVEPDHLDHYGTREAFDAAFVAFAGRLRRAADGSVGILV 240

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS---VEGKDFD 301
             ADD  +  +       G   ++ G   G  + +  + +  +    T++   +  +   
Sbjct: 241 ACADDDGAATLAAAHRAHGGTAVTYGTSPGADVVVSDLHSGADGASATVAGGPLGDRPLP 300

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G   + NA  A      +G   A  +           RFE  G    G R+  D
Sbjct: 301 LRLAVTGVHNLLNATAAVVTAALLGTPPADAVAGAAAFVGTGRRFEPRGEAG-GVRVVDD 359

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH    +E +L+  R +   GR++V+F                 AL LAD  +VT    
Sbjct: 360 YAHHPTEIEALLRAARPVAGTGRVLVLFQPHLYSRTRIFADRFAAALALADEVVVTGVYR 419

Query: 421 RSE--DPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             E  DP      I   +P      G     +R EA R   E+    D+++  G G  T
Sbjct: 420 AREDVDPAVGARTITDLLPTTASGGGVHAVEDRQEAARRIAELARPGDLVLTVGAGDVT 478


>gi|114327092|ref|YP_744249.1| UDP-N-acetylmuramate--L-alanine ligase [Granulibacter bethesdensis
           CGDNIH1]
 gi|122327926|sp|Q0BV26|MURC_GRABC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114315266|gb|ABI61326.1| UDP-N-acetylmuramate--alanine ligase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 481

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 139/435 (31%), Gaps = 62/435 (14%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A   G A+ +V+SSA    +          I VV        L   +      
Sbjct: 59  GHD----AANLGTAQVVVISSAVGRDNPEVAAARAKLIPVVRRAEMLAELMRLKWA---- 110

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S +  + + + L    I     I+++  + RL     +      
Sbjct: 111 ---VAVGGTHGKTTTTSLIAAVLEAAQLDPTVING-GIINAYGTNTRLGAGEWM------ 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       VEA        RL  +       TN+  +H+D+  T +A   A  + F
Sbjct: 161 -----------VVEADESDGSFLRLPAV---IAVVTNMDPEHLDHWGTAEA-MEAGYQQF 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A++  D    ++++ +  +          Q   +  +++          + 
Sbjct: 206 VSNIPFYGFAVLCIDHPTVQKMIPQLSDHRIITYGFSPQAD-VRAERINTDKFGATFEVV 264

Query: 295 VEGKDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +              + GE  + N L A  + + +GI  +++         V  RF 
Sbjct: 265 ITDRQTRRTRRTPPLRLPMLGEHNIANTLAAIAVAVEMGISDSVLQSAFASFKGVKRRFT 324

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G    G  I  DY H    +  +L+  R   +  +I V                   +
Sbjct: 325 KTGETG-GITIIDDYGHHPVEIAAVLRAARQAGARDVIAVVQPHRYSRLASLFNEFCTCM 383

Query: 408 DLADIAIVTDDNPRSEDP--EKIRAEIIHG-----------IPGFIEKGNRIEAIRTAIE 454
           + A   IV D     E P     R  ++ G           +PG       I AI     
Sbjct: 384 NDAGTVIVADVYNAGESPIEGVDRDSLVDGLRTSGHKSVVPLPGPEHLAEMIHAI----- 438

Query: 455 MLNKQDVLVVAGKGH 469
                D +V  G G+
Sbjct: 439 -ARPGDFVVCLGAGN 452


>gi|322387387|ref|ZP_08060997.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
 gi|321141916|gb|EFX37411.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
          Length = 450

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 154/446 (34%), Gaps = 59/446 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               +  G + +       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEDGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G +    G    I   A     T     
Sbjct: 109 ISE---APIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSG---NIGYPASQVAQTATDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     G+                           TNL   HIDYH + + Y  
Sbjct: 163 TLVMELSSFQLMGIQEF-----------------HPEIAVITNLMPTHIDYHGSFEDYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +   +   +   ++  +   +KE+  + + A     +         L+KV   + +
Sbjct: 206 AKWNIQSNMTAAD-YLVLNFNQELAKELATKTNAAVVPFST---------LEKVDGAYLE 255

Query: 289 QQVTISVEGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             + +   G+         +PG   V NAL    +    G+D+  + E L     V  R 
Sbjct: 256 DGL-LYFRGEKVMAADEIGVPGSHNVENALATIAVAKLRGVDNETIKETLSAFGGVKHRL 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +FV     G + Y D   T+  +    K +        +++   G DR      ++  I 
Sbjct: 315 QFVD-QINGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI- 369

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             L  + I+       +  E+I+         +++  +  +A R A E+  + DV++++ 
Sbjct: 370 TGLKKMVIL------GQSAERIKRAADKAGVAYVDATDIADATRKASELAEEGDVVLLS- 422

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
             + +  +  N E +  +  D + E+
Sbjct: 423 PANASWDMYANFEVRGDLFIDTVAEL 448


>gi|206971160|ref|ZP_03232111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218232675|ref|YP_002368712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus B4264]
 gi|228954189|ref|ZP_04116217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071412|ref|ZP_04204634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|229081165|ref|ZP_04213675.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|229152110|ref|ZP_04280305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|229180188|ref|ZP_04307532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|226711881|sp|B7H6P8|MURD_BACC4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206733932|gb|EDZ51103.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218160632|gb|ACK60624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           B4264]
 gi|228603397|gb|EEK60874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|228631459|gb|EEK88093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|228702209|gb|EEL54685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|228711703|gb|EEL63656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|228805509|gb|EEM52100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 450

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|312863272|ref|ZP_07723510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
 gi|311100808|gb|EFQ59013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
          Length = 450

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 147/418 (35%), Gaps = 59/418 (14%)

Query: 61  PQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
            QA+  +G + +       L D +  +    P +  DN      + A  L  + P     
Sbjct: 49  AQALLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNP-----MVARALEKEIPVWTEV 103

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + +  +    G S    G    I   A +   +  +
Sbjct: 104 ELAYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSG---NIGFPASEVAQSVTN 160

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G                 ++         TNL   HIDYH + + Y
Sbjct: 161 QDTLVMELSSFQLMG-----------------IESFHPHIAVITNLMPTHIDYHGSFEGY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + +  +  +   I+  +   +KE+  + +       +V  +       +   ++
Sbjct: 204 VAAKWNI-QNKMTSDDFVILNFNQDLAKELATQTNAQVVPFSTV--EKVDGAYLENGGLY 260

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            K ++ +  +         +PG   V NAL    +     + +  + E L     V  R 
Sbjct: 261 FKGELVMHAD------ELGVPGSHNVENALATIAVAKLSSVSNQAIKETLSSFGGVKHRL 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +FV T     + Y D   T+  +    K +        +++   G DR      ++  I 
Sbjct: 315 QFVDTIDN-VKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELIPDI- 369

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+ +  PR +     RA    G+   ++  +  +A R A E  +  DV+++
Sbjct: 370 TGLKKMVILGESAPRVK-----RAADKAGVT-HLDAKDVADATRIAFEQASAGDVVLL 421


>gi|30022001|ref|NP_833632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 14579]
 gi|228960130|ref|ZP_04121794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229129190|ref|ZP_04258163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|229146484|ref|ZP_04274855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|60390083|sp|Q819Q2|MURD_BACCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29897557|gb|AAP10833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 14579]
 gi|228637117|gb|EEK93576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|228654427|gb|EEL10292.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|228799646|gb|EEM46599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 450

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  I V          LP
Sbjct: 224 ADDADVMALSAYSKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVIEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|78188040|ref|YP_378378.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
 gi|109892699|sp|Q3ANV2|MURC_CHLCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78170239|gb|ABB27335.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
          Length = 467

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 143/415 (34%), Gaps = 49/415 (11%)

Query: 70  AIVVSSAYSLQD---FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V SSA   ++     A +++  P++  D   + L        G      + ++GT GK
Sbjct: 68  VVVYSSAIRSEENVELRAALKAGIPVIKRD---EMLGELMRYKSG------ICISGTHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + +  +   +G S   +     IS + + + +       + +A  Y  +       
Sbjct: 119 TTTTAMIATMLLEAGESPTVM--IGGISDYLKGSTVVGEGKYMVIEADEYDRAF------ 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +        +L  +H+D + T +    A    F   +P     I 
Sbjct: 171 -------------LKLTPTIAILNSLESEHMDTYGTLEELKQA-FITFANKVPFYGRVIC 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
             D     E+ K   +   R ++ G +    +    +  +      TI   G ++ +   
Sbjct: 217 CVD---WAEIRKIIPSLNRRYITFGIEEPADVMATDIVLLEGSTTFTIRAFGIEYPNVRI 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  V NAL A    + +GI    ++  L     +  RF+   + + G  +  DYAH
Sbjct: 274 HVPGKHNVLNALAAFSTGLELGISPERLIAGLGCYSGMRRRFQVKYSGNNGLMVVDDYAH 333

Query: 365 TSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             + ++  +K  +       +V VF                 AL  AD   + D  P  E
Sbjct: 334 HPSEVKATVKAAKDGWQHSKVVAVFQPHLFSRTRDFADEYGWALSRADEVYIADIYPARE 393

Query: 424 DPEK--------IRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
                       +   +       +   N +E + TA++  +  Q +L+  G G 
Sbjct: 394 KAADHPGVTGELVANAVRKAGGKQVHFVNGMEELYTALQTHVAPQTLLLCMGAGD 448


>gi|332142426|ref|YP_004428164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552448|gb|AEA99166.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 479

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 139/408 (34%), Gaps = 46/408 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V+S   +L      +     + V+ +   F  L  S       + ++ +TG++GK
Sbjct: 72  GVDTLVLSPGLALDIEQVELAKQCGVEVIGDVELFARLNTSFKSDTPAKRVVGITGSNGK 131

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V   V  +    G+ S + G                       + +          V 
Sbjct: 132 TTVTLLVNHLLNACGVKSIEAGNVG--------------------RPVLEALESDADVVV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---LLPKESP 243
           +E SS  L+      + L A +  N+  DH+D H T + Y +AK R+F      +     
Sbjct: 172 MELSSFQLE--TTSSLVLEAATVLNISDDHLDRHGTLEHYVDAKHRIFANAKSAVVWRDG 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCR-----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  DDA + E    A  A         +  G          V  + +K    I+  GK
Sbjct: 230 EFVAPDDALNVEGQANAQKANQNGLLRSAIEYGLGASDSGFSIVTMLDSKH---IAFNGK 286

Query: 299 DFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               L    L G   V N + A G+C  +G+     ++HL      P R   V   +   
Sbjct: 287 PIIALSDIHLAGMHNVLNIMAALGICCKLGVSPDQAVKHLHSFKSAPHRCVEVARVNSVR 346

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I    A    +    L+ I    +G+++++   G  +      +   +   ++ +  + 
Sbjct: 347 YIDDSKATNIGATIAALEGISPTIAGKLLLI-AGGDAKGADISSLAPYLTQYVSHVFALG 405

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D                      +     EA++ A+ +    D +++
Sbjct: 406 KD----------AHLFAQSFAHTTQVATMKEAVKGALRLAAPGDAVLL 443


>gi|172057971|ref|YP_001814431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Exiguobacterium sibiricum 255-15]
 gi|226711910|sp|B1YIT8|MURD_EXIS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|171990492|gb|ACB61414.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Exiguobacterium
           sibiricum 255-15]
          Length = 449

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/351 (20%), Positives = 133/351 (37%), Gaps = 44/351 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            + +A+TG++GK++  + V ++ +R        G                    + A  +
Sbjct: 110 ADWVAITGSNGKTTTTTLVHELLKRGSKRVHLAGNIG-----------------FPAVEV 152

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  +  G   + +E SS  L    ++    ++ +F NL   H+DYH    +Y  AK R+F
Sbjct: 153 AQQAEAG-DVIVIELSSFQLM--GIESFCPVSAAFLNLSPAHLDYHGDVTSYAAAKARIF 209

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              + +    ++ ADD    EVM+ +  A    L+   +       +   I   Q   + 
Sbjct: 210 SN-MDEAGRLVVNADDE---EVMRLSETAAAERLTFSRRQDAYAHIENDMIFVGQTEILP 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V          L G   + N L A  L    GI    + + L     V  R E++G  + 
Sbjct: 266 VR------ELALGGGHNLENVLAALTLIEPFGISLTAIQDVLRTFGGVAHRTEYIGEFA- 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G ++Y D   T+N        +    S  I +    G +R     P+  K A+      I
Sbjct: 319 GRKVYNDSKATNNV--ATEAALSGFQSPIIWIC--GGLERGADLTPL--KSAMTHVKHVI 372

Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +   R  D      +I   +   +E     EA+ TA ++    D++++
Sbjct: 373 GLGETGQRFADLAT-EQQIASTVTREME-----EAVATAFDVSKPGDIILL 417


>gi|328952239|ref|YP_004369573.1| UDP-N-acetylmuramate [Desulfobacca acetoxidans DSM 11109]
 gi|328452563|gb|AEB08392.1| UDP-N-acetylmuramate [Desulfobacca acetoxidans DSM 11109]
          Length = 514

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 132/368 (35%), Gaps = 32/368 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                L V+GT GK++ +S +  +   +GL    +     + +F  + R+          
Sbjct: 150 QDRQALVVSGTHGKTTTSSLLAWLLFAAGLDPGFM-IGGIVRNFNANYRVGQG------- 201

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              Y+  +G  + +    +    + +           T++  DH D ++       A   
Sbjct: 202 --PYVVLEGDEYDT----AFFDKRPKFLLFHPRMAILTSVEFDHADIYRDLTHVAQA-FT 254

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQV 291
            F   LP +   + + D    ++V  +A    C+V   G     F   + +         
Sbjct: 255 TFVSQLPPDGELLAWGDAPLVRQVASQA---SCQVAYYGLNSDAFWQGRNLTPKGAGMNF 311

Query: 292 TISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  +G+ ++ F  PL G   V N L A  +   +G+D   + E L     V  R E VG
Sbjct: 312 DVHRQGRFWESFYVPLAGRHNVLNTLAALAVLNDLGVDRRSLKEALPDFVGVKRRLEVVG 371

Query: 351 TNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALD 408
             + G  +  D+AH   ++ E +L         R++  F    +  + +      + AL 
Sbjct: 372 DVA-GVTVVDDFAHHPTAVAETLLAARGRFPGRRLLTAFEPRTNTSRRRIFQSDYVNALA 430

Query: 409 LADIAIVTD--------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            AD+ +V +        ++ R    + +      G P +    +    +   I      D
Sbjct: 431 AADLILVREPPDLWKAPEDDRFSSAQLVADLNRQGRPAWYF-PDTDTLLAALIAKAEPGD 489

Query: 461 VLVVAGKG 468
           V++V   G
Sbjct: 490 VVLVMSNG 497


>gi|18033116|gb|AAL56990.1|AF329282_2 cyanophycin synthetase [Synechococcus sp. MA19]
          Length = 903

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 145/390 (37%), Gaps = 30/390 (7%)

Query: 101 FLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
             ++       +    I  L++ GT+GK++    +  I +++G     +G T+T  ++  
Sbjct: 469 AAAVLDMLFPSEQSSRIPILSIIGTNGKTTTTRLLAHIFKQTGKV---VGYTTTDGTYIG 525

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D  +          A   L    V    +E +  G+ +  L       G   N+  DH+ 
Sbjct: 526 DFLVEAGDNTGPQSAQLILQDPTVEVAVLETARGGILRSGLAFHAANVGVVLNVAADHLG 585

Query: 219 YHQTQQAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKF 276
                     A ++ +  E +  +  AI+ ADD     + +R   N G   ++   +   
Sbjct: 586 IGDIDTIDQLAHLKSVVAEAVFPDGYAILNADDPRVAAMAERTKANVGYFTMNPDSELVR 645

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----------FQVYNALVAAGLCIAIG 326
            H++K       +   +S+   D+                   F + NAL A+       
Sbjct: 646 NHIQKGGVAAVYENGFLSILKGDWTHRIEKAENIPLTMGGRAPFMIANALAASLAAFVQN 705

Query: 327 IDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +    +   L          PGR       S      VDYAH  +S E +   +R+ T+G
Sbjct: 706 VSIEQIRAGLSTFRASFSQTPGRMNLFNLGS--FHALVDYAHNPHSYEALGCFVRSWTNG 763

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIP---- 437
           + I V G  GDR       +GK+A ++ D AIV  DD+ R          II GI     
Sbjct: 764 KRIGVVGGPGDRRDQDFITLGKLAAEIFDYAIVKEDDDTRGRTRGSAADLIIRGIKQVNP 823

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              +    +  +AI  A+++  +  ++V+ 
Sbjct: 824 KYKYESILDETQAINKALDIAPENSLVVIL 853


>gi|254683377|ref|ZP_05147237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. CNEVA-9066]
          Length = 450

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   + I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSAIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V+         LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|295398675|ref|ZP_06808699.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
 gi|294973110|gb|EFG48913.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
          Length = 462

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 141/419 (33%), Gaps = 52/419 (12%)

Query: 61  PQAI--AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----------FAS 107
            QA+     A  +      SL D         P +  +N     +             A 
Sbjct: 52  AQALIEENNARVVAGGHPVSLLDEDFAFMVKNPGIPFNNPMVVRAQEIGLPVYTDIELAD 111

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           ++       I+ +TG++GK++  S V ++  ++   + +      I   + D      + 
Sbjct: 112 KMTD---ATIIGITGSNGKTTTTSLVGEMLGKAASLAGESYVGGNIGIPSLDIASKAEAD 168

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             L   LS     G                  D  +    + TN+   H+DYH +   Y 
Sbjct: 169 DRLILELSSFQLMG-----------------TDAFQPHIAAITNIYAAHLDYHGSMDGYI 211

Query: 228 NAKMRLFEELLPKESPAIIYAD--DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           +AK ++       +   I+ AD  D +     K A        ++   G +        I
Sbjct: 212 SAKWQITANQT-TDDFLILNADQMDVFGDRTTK-ATVVPFSATTIQPDGAWFDQDSQNFI 269

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +     I +  KDF     LPG   + N LVA  +   +GI +  +   +   H V  R
Sbjct: 270 WHD---EIVLNRKDF----FLPGHHNLENMLVAVAIGKLLGISNEEIKNGVSTFHGVKHR 322

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            +FV     G R Y D   T+N  +  +  + + +  +  V++  GG     +   +   
Sbjct: 323 LQFV-AEIDGRRFYNDSKATNN--DASITALDSFSQKQDNVIWLAGGLDRGNEVTELADH 379

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  + +      +     +       G+    +     EA++ A +M    D +++
Sbjct: 380 MDRVKGMVVFGQAADKFAGLGQ-----NKGLTAIQQVEWIEEAVKAAYDMSAPGDTILL 433


>gi|304558043|gb|ADM40707.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda FL6-60]
          Length = 487

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 134/419 (31%), Gaps = 47/419 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A +  +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSTAIAADNPEIIAAREARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
                         ++ +    TN+  DH+D YH   +         F   LP    A++
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVL 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   +E++ R                    +               +          
Sbjct: 230 CIDDPVIRELLPRV-GRQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRLAVTLNA 288

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI-- 358
           PG     NA  AA +    GID   +L  L        RF+F+G       N++ G++  
Sbjct: 289 PGRHNALNAAAAAAVASEEGIDDEAILRALGGFQGTGRRFDFLGEFSLQHVNNKPGKVML 348

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    ++  +K  R      R+++VF                  L   D+ ++ D
Sbjct: 349 VDDYGHHPTEVDATIKAARAGWPDRRLVMVFQPHRFTRTRDLYDDFANVLSQVDVLLMLD 408

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E P        +   I   G    +         +T  + L + D+++  G G+
Sbjct: 409 VYPAGEHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFLQEGDLILTQGAGN 467


>gi|229192082|ref|ZP_04319051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
 gi|228591408|gb|EEK49258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
          Length = 450

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQGAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|33598264|ref|NP_885907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           parapertussis 12822]
 gi|62900578|sp|Q7W4B2|MURD_BORPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33566822|emb|CAE39037.1| putative peptidoglycan synthesis protein [Bordetella parapertussis]
          Length = 508

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 140/421 (33%), Gaps = 63/421 (14%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V      ++     R     +V +      +L       ++   +LA+TGT+GK++V +
Sbjct: 88  LVPHESPTRELLEQARERNVEVVGEIELFARALAGLAESREYRPRVLAITGTNGKTTVTA 147

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             +Q+ +  G+S+   G  S  +  A  + L       +                +E SS
Sbjct: 148 LTRQLIEAGGMSARAAGNISPAALAALIDALDQDDLPQVW--------------VLELSS 193

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+  R   +   A    N+ +DH+D+H   QAY  AK R+    L     AI+  DD 
Sbjct: 194 FQLETTRT--LAPDAAVVLNVTQDHLDWHGDMQAYAQAKARI----LKPARLAIVNRDDP 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE-- 309
            +  +++       R  S G       L     +   Q V      +  DF  P P    
Sbjct: 248 LTVAMVESLQALNVR--SFGR--DVPALVGDMGLELGQGVAWLTACESNDFDEPAPRRKK 303

Query: 310 --------------------------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                                         NAL A  L  ++ +    +L  L      P
Sbjct: 304 DAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWGPMLRTLRDYAGEP 363

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V +      I         +    L+ +     G+ +V+   G  + Q   P++ 
Sbjct: 364 HRAELVRSIGDVDYINDSKGTNVGATVAALEGL-----GQQVVLIAGGQGKGQDFSPLVP 418

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +      + ++  D         I   +       +   +  EA+R A E+    D ++
Sbjct: 419 VVRRHARAVVLIGVDG------AAIGKVLEPTGVPCVAAADMREAVRRAAELAQPGDAVL 472

Query: 464 V 464
           +
Sbjct: 473 L 473


>gi|148378126|ref|YP_001252667.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932484|ref|YP_001382527.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935877|ref|YP_001386079.1| cyanophycin synthetase [Clostridium botulinum A str. Hall]
 gi|148287610|emb|CAL81675.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152928528|gb|ABS34028.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152931791|gb|ABS37290.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A
           str. Hall]
          Length = 873

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 138/373 (36%), Gaps = 27/373 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   SG     +G T+T   +  +  +          A + L+++      +E + 
Sbjct: 494 LIAHILSFSGKK---VGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEAEVAVLELAR 550

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L       G  TN+  DH+      T +     K  L  E + K+   +I AD
Sbjct: 551 GGLIRDGLPYDLADVGIITNVTEDHLGLGGINTLEDMAYVKA-LVGEAIKKDGYVVINAD 609

Query: 250 DAYSKEVMKRA--------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGK 298
           D  S  ++ R          N    ++S     K + L         +++      +   
Sbjct: 610 DEASISIINRMKSKIILFTKNKNNPIISQYLDNKNLVLYLDEDTIYLKKLNKNEEIINVN 669

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGR 357
                      + V NA+ A    IA+GID   + + LE           F   N  G  
Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGIDVNTIRQGLESFSNEEQNPGRFNMYNVHGTN 729

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DY H     +++L++I+ I   RII V G  GDR       +G I  +  D   + +
Sbjct: 730 VILDYGHNIEGYKVVLESIKKIKHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYVYIKE 789

Query: 418 D-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D + R     +I   +  GI              +  EA++ AIE  N  D++++  +  
Sbjct: 790 DRDKRGRKHGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIMFFEEF 849

Query: 470 ET-VHIVTNGEKK 481
           E   +IV +  KK
Sbjct: 850 EPAENIVKDKIKK 862


>gi|329116440|ref|ZP_08245157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
 gi|326906845|gb|EGE53759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
          Length = 452

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 143/427 (33%), Gaps = 61/427 (14%)

Query: 55  DGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLS---- 103
           DG  F         + +G + I  S    L D    +    P +   N   +K L     
Sbjct: 39  DGKAFEENPSAQVLLEEGIKVICGSHPLELLDEDFALMVKNPGIPYSNEMVKKALDKGIQ 98

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       I A+TG++GK++  + +  +   +G S+   G    I   A 
Sbjct: 99  VLTEVELAYLISE---APIFAITGSNGKTTTTTMIADVLNHAGQSALLSG---NIGFPAS 152

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +       L   LS     G                 +D  +      TNL   HID
Sbjct: 153 EVAVDAKENDRLIMELSSFQLMG-----------------VDQFRPHIAVITNLMPTHID 195

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y NAK  + +  +  +   I+  D   S ++  +         S         
Sbjct: 196 YHGSFEEYVNAKWNI-QNNMSDKDFLILNGDQEISYDLANKTKATILYFSSQKEVDGAYC 254

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L        +  +              +PG   V NAL    +     +D+  + E L  
Sbjct: 255 LDGKLYFEGEYIMDAD--------QIGVPGLHNVENALATIAVAKLANVDNDSIKETLAS 306

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              V  R ++VG  ++       Y  + S ++    K + +  +  +I++   G DR   
Sbjct: 307 FGGVKHRLQYVGQVNQ----IKFYNDSKSTNILACQKALSSFDNSNLILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I        I+      S D  K  AE   G+  +++  +  EA   A +   
Sbjct: 362 FDDLVPDIIGLK--KLILLGQ---SADKMKKAAE-KAGV-SYLDAKDVAEATAIAFKEAK 414

Query: 458 KQDVLVV 464
           + DV+++
Sbjct: 415 QGDVVLL 421


>gi|315606651|ref|ZP_07881662.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           buccae ATCC 33574]
 gi|315251661|gb|EFU31639.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           buccae ATCC 33574]
          Length = 443

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 130/362 (35%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 94  EFAARYTH---SKMVCITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIG------------ 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT- 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 139 -------KSLALQVAEDPHEYYIIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDNC 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AKMR+ +     +S      D    +E+ K    A     S   +   I   + 
Sbjct: 190 MQNYVDAKMRILQNQTADDSFIFWNDDPIIKRELEKYDIKAVKCPFSELKEKGSIGYIEE 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                ++    ++E ++      L G+  +YN+L A       GI   ++ + L     V
Sbjct: 250 GEYKIEKPTPFNMEQEE----LSLTGKHNIYNSLAAGIATNIAGIKKEVIRKSLGDFPGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V     GG  Y++ +  +N ++     + ++ +  I+++   G D+      I 
Sbjct: 306 EHRLEKVC--KVGGVQYINDSKATN-VDACWYALESMKNPTILIL--GGKDKGNDYNQIK 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      +  +  DN +  D          GIP   +  +  + +    EM    D +
Sbjct: 361 ELVKKKCVGLVYLGADNKKLHDNFD-----ALGIP-VRDTHSMKDCVAACYEMARPGDTV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|296504406|ref|YP_003666106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
 gi|296325458|gb|ADH08386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
          Length = 424

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 42  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 98

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 99  TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 149

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 150 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 197

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  I V          LP
Sbjct: 198 ADDADVMALSAYSKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVIEVSD------IVLP 250

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 251 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 308

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 309 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 359

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 360 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 396


>gi|332366089|gb|EGJ43845.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1059]
          Length = 459

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 139/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q+    G +    G    I   A     T  +
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSG---NIGFPASQVAQTASN 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G+                           TNL   H+DYH + + Y
Sbjct: 170 KDTLVMELSSFQLMGIEAF-----------------HPQIAVITNLMPTHLDYHGSVEGY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +         +          K   A  
Sbjct: 213 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQATVVPFSTTE--------KVDGAYL 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 264 EGDVLTFRGEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGRVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA  + G+  +++  +  +A   A       D++++
Sbjct: 380 G-LKKMVILGQSAARVK-----RAADLAGV-SYLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|20094189|ref|NP_614036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
 gi|19887208|gb|AAM01966.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
          Length = 480

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 161/444 (36%), Gaps = 55/444 (12%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAV 120
           A  +G   +V       +          P+++  VD   ++    A           + V
Sbjct: 54  ASERGVACLVTEHPRG-KLIERCDELGIPLILTEVDRANEYALRVAREKCA-PDATAICV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+    +  I   +G  ++             D R    + I    A+     +
Sbjct: 112 TGTNGKSTTNHLLHHILDTAGFDAYC----------NTDFRSEKNTLIDPVVAMELREER 161

Query: 181 GVTHVSVEASS-HGLDQHRL---------DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++ VE S   GL   R+           +K      TN+G DH +   + +   +A 
Sbjct: 162 PEDYLCVEVSEVQGLPTGRIMEDHAYRMAKALKCELAVVTNVGVDHTNLVSSLEEMVDAV 221

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +   L  K   A++  DD Y + + +         +  G+   + H+++         
Sbjct: 222 YGVVRAL-RKGGIAVLNRDDRYVRRMTREG----VETVWYGWDEGYSHIEERDGEEW--- 273

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +  E       FPLP +  +YNAL A     A+GID   + E L     +  RFE + 
Sbjct: 274 IVLDEEPLIPVREFPLPVDHFLYNALAAVAAAGALGIDREDIAEGLRTYQPLKRRFERLC 333

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  IY D+ H  + +   ++ +R +   ++IVVF   G R       + +   + A
Sbjct: 334 ---DDPLIYDDFCHNPDGVLATVRALRRLGRSKVIVVFAIRGSRGVDINRQIARALAEGA 390

Query: 411 D---------IAIVTD-----DNP---RSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTA 452
                       I T      D+    R E+      E+      + E  +R+E A+  A
Sbjct: 391 KDLQDEGIHVHVIATSSEGLVDDANVVRPEERRAFLEELERSGIDY-EHYDRLEDALERA 449

Query: 453 IEMLNKQDVLVVAGK-GHETVHIV 475
           +++ +   V+++ G  G E    V
Sbjct: 450 LDLADDDTVILLGGAQGMEPAREV 473


>gi|224369147|ref|YP_002603311.1| Mpl [Desulfobacterium autotrophicum HRM2]
 gi|223691864|gb|ACN15147.1| Mpl [Desulfobacterium autotrophicum HRM2]
          Length = 472

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 132/365 (36%), Gaps = 31/365 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + I+ VTGT GK++ +S +  +  ++G   SF IG   T   F  + R+           
Sbjct: 115 KKIILVTGTHGKTTTSSLMAHVLNQAGLDPSFMIGGIVT--DFNSNYRIGGGD------- 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y+  +G  + +          H            T +  DH D  +            
Sbjct: 166 --YIVIEGDEYDTAFFDKGPKFMHYAPCFT----IMTGVEFDHADIFRDLDHVRQIFAAF 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + LLP+      + DD   KE++  A+N   R+   G+         +          I
Sbjct: 220 VKGLLPESMTIA-WGDDMNLKEILAHANN---RIQRYGHGPGEWQCIDLKVEQGTSVFRI 275

Query: 294 -SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              EGK   F  PL G+  V NAL    +   I I   ++   L     V  R E  G  
Sbjct: 276 KDPEGKILRFAIPLMGDHNVMNALAVIAVARQINIPVDVLARALVSFSGVKRRQEVRGVK 335

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIM-GKIALDLA 410
            RG  +  D+AH   ++   L+ +R   T GRII VF    +    K        A D A
Sbjct: 336 -RGITVMDDFAHHPTAVRETLRAVRPFYTQGRIIAVFEPRTNSSMRKVFQTIYPQAFDDA 394

Query: 411 DIAIV-----TDDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+  +         P  E   PEK+ A+I       +   +    +   ++M    D+++
Sbjct: 395 DLVCICRPSAMGKIPVEERLSPEKLVADICERGTQALLFDDTDTLVDFLVKMGVTGDLML 454

Query: 464 VAGKG 468
           +   G
Sbjct: 455 IMSNG 459


>gi|237709499|ref|ZP_04539980.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|265754705|ref|ZP_06089757.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
 gi|229456555|gb|EEO62276.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|263234819|gb|EEZ20387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
          Length = 444

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 123/362 (33%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I +++G++    G               
Sbjct: 95  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG------------ 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++     +  +E SS  LD   +           N+  DH+D +   
Sbjct: 140 -------QSLAYQVAEYNYDYYVIELSSFQLDN--MYKFHANIAVLMNITPDHLDRYDHQ 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P ++      D    +E+ K   +      +   +       + 
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAYVEQ 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++  + +  ++E ++      L G   ++N++ A       GI    + E L     V
Sbjct: 251 DKVYFTEPIAFNMEQEE----LALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGV 306

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A   NS    L++++T       ++   G D+      I 
Sbjct: 307 EHRLEKVCRVRGVDYINDSKATNVNSCWYALQSMKT-----KTILILGGKDKGNDYNEIA 361

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      +  +   N      EK+ A          +  +  +A+  A  M  K + +
Sbjct: 362 DLVKEKCTGLIYMGLHN------EKLHAFFDKFGLPVADVQSMKDAVDAAYRMAKKGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
 gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
          Length = 820

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 123/362 (33%), Gaps = 38/362 (10%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSN-- 89
           +DSR +      +F A+   +  G  +IP+   +G    ++    + L +          
Sbjct: 3   TDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSG 62

Query: 90  ---------------TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                             L+V N  K L   A     K    ++ +TG++GK+ V  ++ 
Sbjct: 63  QDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLH 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           Q+                 S  + ++++  P  ++    LS  +  G+    +       
Sbjct: 123 QLLS--------PDRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGISEMGEMG 171

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-S 253
              R+  IK   G  TN+G  H +   + Q     K+ LF++        I   D+   S
Sbjct: 172 ALKRM--IKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDC----DVVIYNGDNELIS 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V K    A     S     + +++ +V    +   ++      D  F  P   +  + 
Sbjct: 226 NCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCIPFIDDASIE 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L     C+ +   +  + E + +L  +  R E     +    I   Y     SL++ L
Sbjct: 286 NVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSDLASLDIAL 345

Query: 374 KN 375
             
Sbjct: 346 DF 347


>gi|225870026|ref|YP_002745973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
 gi|225699430|emb|CAW92917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
          Length = 457

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 141/417 (33%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS---------LFAS 107
             QA+  +G   I  S    L D         P +  DN    + L            A 
Sbjct: 52  AAQALLEEGIRVICGSHPLELLDEDFYCMVKNPGIRYDNPMVVRALDKAISILTEVELAY 111

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +      S+   G     +S            
Sbjct: 112 LVSE---APIIGITGSNGKTTTTTMIADVLNAGNHSALLAGNIGFPASEVAQAATAK--- 165

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                            + +E SS  L     +  +      TNL   H+DYH + + Y 
Sbjct: 166 ---------------DILVMELSSFQLL--GTEQFQPHIAVITNLVPTHLDYHGSFEDYI 208

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK R+ +  +  +   ++ AD    K + ++   +     S   +    +L        
Sbjct: 209 AAKRRI-QHRMTDKDYLVLNADQELVKSLAQKTKASPV-FFSTKEKVDGAYLADGYLYFK 266

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++++  + E         +PG   + NAL    +    GI + ++   L     V  R +
Sbjct: 267 EERLMSAAE-------LGVPGRHNIENALATIAVAKLRGISNQVISRTLSHFRGVKHRLQ 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VGT ++    + + + ++N L    K +        +++   G DR      ++  +  
Sbjct: 320 LVGTLNQ--VTFYNDSKSTNIL-ACQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLVG 375

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       E  E+++         +++  +   A + A E     D++++
Sbjct: 376 LK--KMILL-----GESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKAGDIILL 425


>gi|42783006|ref|NP_980253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 10987]
 gi|60390050|sp|Q732F6|MURD_BACC1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|42738933|gb|AAS42861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10987]
          Length = 450

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNXT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKGEKVVEVGD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|258510191|ref|YP_003183625.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476917|gb|ACV57236.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 881

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 134/384 (34%), Gaps = 29/384 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           SLF +   G+ P  I+++TGT+GK++ A  V      +G +   +G T+T   +     +
Sbjct: 470 SLFPAGSDGRIP--IVSITGTNGKTTTARLVAHGFALAGKA---VGLTTTGGVYIGGECV 524

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYH 220
                     A   LS+  V    +E +  G+ +  L       G  TNL  DH+  D  
Sbjct: 525 CRGDTTGPMSARLVLSNPRVEVAVLETARGGIVRGGLAYDVADVGVITNLSLDHVGQDGL 584

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +T       K  L  E +  +   ++ ADD     +  R       V  V          
Sbjct: 585 ETIDDIAFVKA-LVGECVRDDGAVVLNADDPRVLALAPRFRAPLVLVSQVPENPHVARHV 643

Query: 281 KV--CAIHNKQQVTISVEGK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +    A+     V    +G                     F V NA +AA    A G+  
Sbjct: 644 QAGGTAVVASDGVLYEWQGGAQRPIIGVAQIPICLGGLARFHVENAALAAAAMRAAGLPR 703

Query: 330 ALVLEHLEKLHV--VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + V + L         GR E       G R+ +DY H       + + ++ +   R + V
Sbjct: 704 STVAKALATFLPEQNTGRLEMYVLP-NGARVVLDYGHNPAGFREVGRWLQALPCRRRVGV 762

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFI 440
            G  GDR        G+      D  IV +D + R   P ++   +   I          
Sbjct: 763 VGVPGDRANHVVEEAGRALAPWFDEFIVKEDADLRGRTPGEVARLLSSSIARACPDKKVE 822

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
              +  EA   A+  L  +DV+ V
Sbjct: 823 VILDEREAALIAVRGLGPEDVVCV 846


>gi|163732135|ref|ZP_02139581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
 gi|161394433|gb|EDQ18756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
          Length = 464

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 135/407 (33%), Gaps = 46/407 (11%)

Query: 68  AEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
           A  IV   +   Y   +    +     + V ++   F   FA+  +        ++AVTG
Sbjct: 68  ARLIVSPGIPHLYPAPNPVVRLALQAGVPVDNDIGLFFQSFATEDWSNFDIAPRVVAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ ++ +  I +  G  +   G                         L        
Sbjct: 128 SNGKSTTSALIHHILEHVGRPATLAGNIG-------------------RGVLDIDPPHDG 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 169 EVVVLELSSYQTDLAR--SLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRRLFAEGGPDRA 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VEGK 298
              +  D+  S         A  RV+ +    K                       +   
Sbjct: 227 IVGVDEDEGLSLAGQLAEGRADDRVIRISVAQKLTGPGWQVFARKGFLSEYRKGKQIASI 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D   +  LPG     NA  A  +C ++G+   ++   L     +P R + VG    G R 
Sbjct: 287 DLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKVIEAALHSFQGLPHRSQLVGEK-DGVRF 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             D    + + +   K +    S R I     G ++D G   +    A  +    I   +
Sbjct: 346 VNDSK--ATNADAAAKALAAFPSIRWIC---GGLEKDGGMDALRDASASVVKAYVI-GRE 399

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                    + AEI   +          +A+  A       DV+++A
Sbjct: 400 AAAFAMKLPVEAEICTTM---------AQAVEKAAREAEAGDVVLLA 437


>gi|145220556|ref|YP_001131265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189082914|sp|A4SH04|MURD_PROVI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145206720|gb|ABP37763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 465

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 129/386 (33%), Gaps = 41/386 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS         I+ +TGT GK++ A+ V  I    G             S   +    
Sbjct: 100 EVASWFCR---ARIVGITGTDGKTTTATLVHDIAAAEG-------------SLRGNRAWG 143

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
             +      A+     +G T V   +S       R    +      TN+  DH+  +  +
Sbjct: 144 VGNIGVPFSAMVGEMEEGDTAVVELSSYQ---LERCVTFRPDVSVLTNITPDHLGRYDGS 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-------SVGYQGK 275
            + Y  AK R+      +    I  ADD+  +E          RV        S G    
Sbjct: 201 MERYAAAKFRICMNQ-KEGDTLIYNADDSLLEEHFGGGAFPFRRVPFSLEEPPSAGVMHD 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            + L+    +  +      V   D        G   +YNAL A  +  A+GI   +V + 
Sbjct: 260 GVFLRDGEIVVARDGGERRVARTDGFLKNSFRGRHNIYNALAAVAVSEALGIGDGVVRDG 319

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     V  R +FV        I    A   N++   L+ +        IV+   G D+ 
Sbjct: 320 LGAFQGVRHRQQFVRRLGGADWINDSKATNVNAMRQALEAVE-----GKIVLIAGGRDKG 374

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
              RP++  +A  +  +  + +          + AE   G+    E  +   A+  A   
Sbjct: 375 NDYRPVLPLVAEKVELLLSIGES-------RALLAEAFKGVARIQEAASLEGAVSLARAA 427

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKK 481
             +   ++ +  G  +  +  N E++
Sbjct: 428 AGEGWTVLFS-PGCASFDMFRNFEER 452


>gi|315646029|ref|ZP_07899150.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
 gi|315278790|gb|EFU42104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
          Length = 479

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 142/434 (32%), Gaps = 69/434 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSL---------FASRLYGKH 113
           A G   I       L D    +    P +   V   RK L L          A  L    
Sbjct: 54  ALGISVICGGHPDDLIDPGVALLVKNPGIPYSVPPVRKALELEIPIVTEVEVAYHLCE-- 111

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I+ +TG++GK++  ++V ++ + +GLS    G   T                     
Sbjct: 112 -APIIGITGSNGKTTTTTWVGKLLESAGLSPIVAGNIGT--------------------P 150

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS  +++      +            +  +       N+   H+DYH     Y ++K RL
Sbjct: 151 LSEAAAEATPDNWMVVELSSFQLKGTEEFRPRIACLLNIAETHLDYHGGMDDYISSKARL 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-----------LSVGYQGKFIHLKKV 282
           F      +  A++  DD   + ++                     LS  Y        + 
Sbjct: 211 FVNQT-ADDTAVLNWDDPVCRNLVPYIKARIIPFSMTESLREGVYLSTPYAPGSQDSDED 269

Query: 283 CAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                +  +    EG   + +      LPG F V NAL A  + IA G+    +   L  
Sbjct: 270 EGDVGRTIIYTDGEGFTHEIIRVENIGLPGRFNVDNALAACAIAIAAGVAPDQLEGALSS 329

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R EFV          + Y + S +      N+   +    I++   G DR    
Sbjct: 330 FRSVEHRLEFVAELQG-----ISYYNNSKATNSKATNMALTSFKEPIILIAGGLDRGSDY 384

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIE-------AIR 450
             ++  +   +  + ++       E  EKI  A    G+   I   N  +       A+R
Sbjct: 385 EDLIPSMQGRVKAVVLI------GETKEKIANAAAKAGLKDIILVDNGKDAAATLTSAVR 438

Query: 451 TAIEMLNKQDVLVV 464
            A E+    D++++
Sbjct: 439 KASELAESGDIVLL 452


>gi|303234875|ref|ZP_07321500.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
 gi|302493993|gb|EFL53774.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
          Length = 461

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 129/404 (31%), Gaps = 37/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV + A    +          + VV     FL               + V+G+ GKS+  
Sbjct: 74  IVYTDAILDDNEELIAARELGVDVVSRGV-FLGALMRNYKYS-----IGVSGSHGKSTTT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + +I   + +    +          Q N     S   L +A  Y ++    + S+   
Sbjct: 128 SMIAKILIDAKVDPSIL--LGGKLDEIQGNVHCGNSEYMLTEACEYKANILNYYPSM--- 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                               N+  DH+D+++         +   + L  + S AII  DD
Sbjct: 183 ----------------AIILNIDEDHLDFYKDLNHIVATFIGYMKNL-DENSKAIINIDD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPG 308
              + ++               +  +         +      +S E   KD +F   + G
Sbjct: 226 KNCEPLLSHIKGEIITFGIENEKADYNVHDITFNENGNPSFVVSSEKFDKDEEFSLSIIG 285

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              +Y+A+ A   C    ID   + +++++ H +  R E +G   +G  +  DY H    
Sbjct: 286 RHNIYDAVAAIIACYEFHIDIDTIRKNMKEYHNLHRRMETIGF-YKGCEVKTDYGHHPTE 344

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-- 426
           ++  LK +     G+   VF                 A    D  +VT+     E  +  
Sbjct: 345 IKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDDFANAFYDCDEVVVTEIYAAREKFDSS 404

Query: 427 ----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  +++             EA       + + D+++  G
Sbjct: 405 IHSTDLVEKLVKNGVNAKYYKTFEEARDYIRSKVCENDMVLTTG 448


>gi|288925518|ref|ZP_06419451.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccae D17]
 gi|288337734|gb|EFC76087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccae D17]
          Length = 443

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 130/362 (35%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 94  EFAARYTH---SKMVCITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIG------------ 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT- 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 139 -------KSLALQVAEDPHEYYIIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDNC 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AKMR+ +     +S      D    +E+ K    A     S   +   I   + 
Sbjct: 190 MQNYVDAKMRILQNQTADDSFIFWNDDPIIKRELEKYDIKAVKCPFSELKEKGSIGYIEE 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                ++    ++E ++      L G+  +YN+L A       GI   ++ + L     V
Sbjct: 250 GEYKIEKPTPFNMEQEE----LSLTGKHNIYNSLAAGIATNIAGIKKEVIRKSLGDFPGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V     GG  Y++ +  +N ++     + ++ +  I+++   G D+      I 
Sbjct: 306 EHRLEKVC--KVGGVQYINDSKATN-VDACWYALESMKNPTILIL--GGKDKGNDYNQIK 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      +  +  DN +  D          GIP   +  +  + +    EM    D +
Sbjct: 361 ELVKKKCVGLVYLGADNKKLHDNFD-----ALGIP-VRDTHSMKDCVAACYEMARPGDTV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|330813736|ref|YP_004357975.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486831|gb|AEA81236.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 467

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/392 (16%), Positives = 134/392 (34%), Gaps = 44/392 (11%)

Query: 68  AEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +++S+A + +  +F A I+    I+   +      + A  +  K     + ++G+ G
Sbjct: 69  AKIVIISTAINKKNIEFQAAIKKKILIIRRAD------MLAHIISLK---KNIVISGSHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+++ S V  I + +      +     I+S   + RL       +               
Sbjct: 120 KTTITSLVSTILKDANFKPTIVNG-GIINSLKTNARLGDGDWSVIEA------------- 165

Query: 186 SVEASSHGLDQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                    D+     +K        +N+  +H+DY+++     N +  LF +  P    
Sbjct: 166 ---------DESDGSFLKFSNTIAVVSNIDHEHMDYYKSFSNLTN-QFALFLDKTPLFGK 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDF 300
            ++  DD    +++K++            +  FI    + K   I+   +V +  +    
Sbjct: 216 NVVCLDDPSIAKLIKKSTKQNFLTYGFSSKADFIPSNLVYKNMKIYFDLKVNLKKKFTIK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G+  V NA  A  + I +GI    +   LE    V  R   +    +   I+ 
Sbjct: 276 NVTLNLMGQHNVLNATAAIIVSITLGISVEKIKRTLENFLGVQRRLTKLYEK-KNRIIFD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH    +  +L   +       IV VF                     +D+ ++    
Sbjct: 335 DYAHHPTEIAAVLNACKKNFKKHKIVSVFQPHRFSRVQSLYSEFSNCFLDSDLVVLCPVY 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
              E    I  ++       ++  N    I  
Sbjct: 395 AAGEK--SINFDLEKFGKKIVKNSNTEVVIAK 424


>gi|323127721|gb|ADX25018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 452

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 149/428 (34%), Gaps = 63/428 (14%)

Query: 55  DGHLF----IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS---- 103
           DG  F      QA+  +G + +  S    L D         P +  DN    + L     
Sbjct: 39  DGKPFEENPAAQALLEEGIKVVCGSHPLELLDEDFEYMVKNPGIPYDNPMVTRALEKQIP 98

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       I+ +TG++GK++  + +  +    G S+   G          
Sbjct: 99  VLTEVELAYLVSESP---IVGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------- 148

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                 P+   + KA +         + +E SS  L    +D  K      TNL   H+D
Sbjct: 149 -----YPASEVVQKASAN------DTLVMELSSFQLM--GIDAFKPHIAVITNLMPTHLD 195

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK R+  E+   +   I+ A+   S  + K          +         
Sbjct: 196 YHGSFEDYVAAKWRIQAEMT-ADDYLILNANQEISAALAKTTKATVIPFST--------- 245

Query: 279 LKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            ++V      +   +  +           +PG   + NAL A  +    GI   +++E L
Sbjct: 246 -QEVVDGAYLEDGMLYFKRHPIMPAANLGVPGSHNIENALAAIAVAKLSGIADDVIVEVL 304

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                V  R + VG   +    Y D   T+  +    K +    + ++I++   G DR  
Sbjct: 305 SHFGGVKHRLQLVG-KIKDITFYNDSKSTN--ILATQKALSGFDNKKLILI-AGGLDRGN 360

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++  +   L  + I+ +   R     K  AE+ +    ++E  +   A   A +  
Sbjct: 361 EFDDLVPDLRG-LKQMIILGESAER----MKRAAEMAN--VPYLEAADVAAATELAFQEA 413

Query: 457 NKQDVLVV 464
              D +++
Sbjct: 414 QAGDTILL 421


>gi|149922481|ref|ZP_01910913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
 gi|149816676|gb|EDM76168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
          Length = 468

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 127/364 (34%), Gaps = 35/364 (9%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+L  +  + +  E  L +TGT+GKS+V +    + +  G S+F  G      S      
Sbjct: 112 LALLVAASWPRSLETAL-ITGTNGKSTVTALTGALLEAGGRSTFTGGNLGVPLS------ 164

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-AGSFTNLGRDHIDYH 220
                   L  A++    +    + +E SS+ L+  R+ G   +      N+  DH+D +
Sbjct: 165 -------ELVLAVARGEREAPEALVLECSSYQLETLRVHGSPAVSVAMLLNVSPDHLDRY 217

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            + + Y   K R+F  L P    A++ A DA++  + +    A   VL  G   +     
Sbjct: 218 DSLEHYAETKGRVFGGLEP-GGLALLSARDAFTPRLRRFVPEAARCVLVDGEDDRPRLSD 276

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +   + +              L G     NAL A      +G+        L +  
Sbjct: 277 ASLELGAGESID--------RRALALAGRHNALNALFAVLAARHLGVSLDTCEATLRRFQ 328

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R   +    R G  Y D +  +N     +           +++ G           
Sbjct: 329 ALPHRMNPIAE--RDGVRYFDDSKATNV--ASVLAGLDGFEQTFVLICGGRAKDGDDLGA 384

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +A     +  +       E  E+  A +  G    +   +  EA+R A       D
Sbjct: 385 LRPVLARQGRALVAL------GESAEQFMA-MAKGALPCVRVADMDEAVRVAASCAQPGD 437

Query: 461 VLVV 464
            +++
Sbjct: 438 AVLL 441


>gi|330823366|ref|YP_004386669.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
 gi|329308738|gb|AEB83153.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
          Length = 863

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 121/359 (33%), Gaps = 32/359 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +    G  +     T+T   +    ++ +        A + L+        +E + 
Sbjct: 487 LIAHLFTAHGWRTAM---TNTDGVYVNGRQIDSGDCSGPRSARNALAHPEADAAVLECAR 543

Query: 192 HGLDQHRLDGIKLIAGSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            GL +  L   +      TN+G  DH+   +  T +     K R+  + + ++  A++ A
Sbjct: 544 GGLLREGLGFDRCQVAVVTNVGEGDHLGLNFIHTVEDVAVLK-RVIVQNVAQDGYAVLNA 602

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEG------ 297
            D +   V   A +   +V+                +    ++  +   ++ EG      
Sbjct: 603 ADPH---VAAMATSCPGKVIFFAADRHHPVMATHRAQGNRVVYVDEGHIVAAEGSWRESV 659

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNS 353
             ++          FQV NA+ A      +G+    +   L             F   + 
Sbjct: 660 PLREIPITRGGAIGFQVENAMAAIAATWGLGLPWQTIRRGLAGFVNDSDNAPGRFNVMDY 719

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  +  DY H  +++  +++ +  I + +  VV    GDR         +      D  
Sbjct: 720 RGATLIADYGHNPDAIRALVQAVDAIPAKQRSVVISGAGDRRDQDIIEQTRTLGAAFDDV 779

Query: 414 IVTDD-NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           ++  D   R     ++ A +  G+ G        E      AI  A+E L   D+ +V 
Sbjct: 780 VLYQDACQRGRADGEVLALLKQGLEGAPRTRYVTEIHGEFVAIDHALERLQPGDLCLVL 838


>gi|220927591|ref|YP_002504500.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
 gi|219997919|gb|ACL74520.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
          Length = 893

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 138/393 (35%), Gaps = 45/393 (11%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++      G   + +G TST   +  +  +          A   L+++ V    +E + 
Sbjct: 497 LIRHTLSLLG---YNVGMTSTSGIYVGNECVQKGDNTGPVSAEVILANKEVDVAVLETAR 553

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+  D   T +     K  + E  +  +  A++ AD
Sbjct: 554 GGIVRRGLGYDLADVGVLINISEDHLGIDGINTLEDLAKTKALIVEA-VKHDGYAVLNAD 612

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-----KKVCAIHNKQQVTISVEGK------ 298
           D  +  V++R  +    + S G             K +        + I   GK      
Sbjct: 613 DGMTPYVLERTRS-NVIMFSRGISNPVFKRHCKNSKNIAVYVRDGYIWIQRNGKKLPLIS 671

Query: 299 --DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTN 352
             D    F    +  + N+L A    I + I   ++++ +          PGRF      
Sbjct: 672 LDDIPITFGGIVDCNIENSLAAISALIGLNIPLDIIIKGMSTFQPDTQLNPGRFNIFDMG 731

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +   ++ +DY+H       ++K ++ + + R++ + G  GDR       +G++       
Sbjct: 732 T--FKVMIDYSHNIAGYSAVVKFMQKVKAKRLVGIIGMPGDRQDSNFKEVGELCAKSFHR 789

Query: 413 AIVTDD-NPRSE---DPEKIRAE--IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             + +D + R     +   I  +  I  G          +  EA+  A+      D++ +
Sbjct: 790 IYIKEDIDLRGRRRGEVANIFEQSMINAGAKRENIEIIYSETEALEKAMLDAQPGDLIAM 849

Query: 465 AGKGHETV----HIVTNGEKKMSVDCDIIREIL 493
               +E       ++   +K    + +   EIL
Sbjct: 850 F---YEEFDPAIQVINRFKK----EQEHANEIL 875


>gi|222097358|ref|YP_002531415.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Bacillus
           cereus Q1]
 gi|254766038|sp|B9IVY9|MURD_BACCQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221241416|gb|ACM14126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Q1]
 gi|324327812|gb|ADY23072.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 450

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKGEKVVEVGD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|306822431|ref|ZP_07455809.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           ATCC 27679]
 gi|304553976|gb|EFM41885.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           ATCC 27679]
          Length = 532

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 125/437 (28%), Gaps = 58/437 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SSA    +            +V  +   L+L          +  + V G  GK
Sbjct: 99  GARTVVFSSAIKPDNPEIVAAYEAGERIVHRS-DILALLM------QSKRAVTVAGAHGK 151

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S +  I   +G             S+A    +       L    +   S  V    
Sbjct: 152 TTTSSMLAHILVNAGEGE------LADPSYAIGGSIQGKDGATLDGGHAGKGSVLVAEAD 205

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S                  TN   DH+D++ T+  Y  A     E         I+
Sbjct: 206 ESDGSFA-------KYHPEIAIITNAEADHLDHYGTEAKYRAA---FVEHAGRAGKAVIM 255

Query: 247 YADDAYSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVT----------- 292
             DD  +  V++       R   V S         L     +  + +             
Sbjct: 256 CGDDDGALAVLRALKTEVARHVVVYSTQPSEDLGDLNGAAHVRIESESESAQSGTEHFIL 315

Query: 293 ------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 + VE +       +PG     NA  A    + +G+D                RF
Sbjct: 316 HLPAGLVDVEERRVPVTLTVPGIHNARNATAALLATVMLGVDVERAAAAATSFLGAARRF 375

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +  G+ ++   +  DYAH    +  +L    R      I V+F                 
Sbjct: 376 QIRGSVNQ-VTVIDDYAHHPTEIAALLDAARRRYPEAGIHVIFQPHLFSRTMFFAREFAE 434

Query: 406 ALDLADIAIVTDDNPRSED--------PEKIRAEIIHGIPGFIE-----KGNRIEAIRTA 452
           AL  AD  IVT   P  E         P+ I  E +       +       +   A +  
Sbjct: 435 ALAKADDVIVTGIFPAREKQEDFPTVSPDTIVNEAVKLEHEPADDWIRGVDDMRTAAQMM 494

Query: 453 IEMLNKQDVLVVAGKGH 469
           +   +  DV+   G G 
Sbjct: 495 VMRAHHGDVIFTVGAGD 511


>gi|284929364|ref|YP_003421886.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
 gi|284809808|gb|ADB95505.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
          Length = 501

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 138/418 (33%), Gaps = 52/418 (12%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +    ++ A  +   P+    +    L               + V GT GK++
Sbjct: 112 VICSTAITNDNSEYLAAKKKGCPVFHRSDILAALI---------SDYKSIGVAGTHGKTT 162

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +G     I PT  I                        + +G     V+
Sbjct: 163 TSSLIGYMLLEAG-----IDPTIIIGG----------EVDAWDGNARIGAEKGYLVAEVD 207

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++Q      N   ++F       +   I  
Sbjct: 208 ESDGSLIKH-----HPHIGVITNIELDHPDHYQNLDDVINT-FQIFA------AQCDILV 255

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLP 307
                + +           L    Q  +  +K +   +   +  +   G         + 
Sbjct: 256 GSLDCEIISSYLSPHITYSLDFNKQADYT-VKNLVNDNKGARAEVWERGIYLGKINLTVL 314

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L A  +   IG++ +++++ L        RFE  G  +       DYAH  +
Sbjct: 315 GNHNVSNTLAAIAVGRKIGLEFSVIVDSLLNFQSPKRRFEKRGYCNE-ITFIDDYAHHPS 373

Query: 368 SLEMILKNIRTITSGRI----IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            ++  L   R+    ++    +V+F                   + AD+ ++TD     E
Sbjct: 374 EIKATLSAARSKIDNKLANRIVVIFQPHRYSRTFALLEKFATCFNEADLVVLTDIYSAGE 433

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                   E +  E+    P  +   +  +  +   E+L  +D+++  G G+    I+
Sbjct: 434 INTNNIYGEDLAKEVSKNHPKVLYFPSLEDLPQKLPELLQPKDLVLFLGAGN-LNQII 490


>gi|189347969|ref|YP_001944498.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium limicola DSM
           245]
 gi|229486479|sp|B3EIK7|MURC_CHLL2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189342116|gb|ACD91519.1| UDP-N-acetylmuramate/alanine ligase [Chlorobium limicola DSM 245]
          Length = 466

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 149/427 (34%), Gaps = 67/427 (15%)

Query: 67  GAEAIVVSSAYSLQD---FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G + +V SSA    +    SA  ++  P++  D   + L       YG      + ++GT
Sbjct: 65  GCDVVVYSSAVRKDENVEISAAEKAGIPVIKRD---EMLGELMRYKYG------ICISGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  +   SG S     PT  I   +                 S +  +G  
Sbjct: 116 HGKTTTTAMIATMLMESGES-----PTVMIGGVSDYLGG------------STVVGEG-- 156

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +   S   D+  L  +        +L  +H+D + T +   NA    F + +P    
Sbjct: 157 -KYMVIESDEYDRAFLK-LTPTIALVNSLESEHMDTYGTLEELKNA-FIAFADKVPFYGR 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD- 301
            I   D    ++++   +    R  + G +    +    +    N    TI+  G  ++ 
Sbjct: 214 VICCVDWPEIRKIIPMLNR---RYTTFGIEEHADVMASDIVMEKNHTVFTITAFGSRYEG 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   V NAL A    I + I    ++  L     +  RF+    N RG  I  D
Sbjct: 271 VRLHVPGRHNVLNALAAFSAGIELEIAPEKLIAGLGCYSGMRRRFQIRYDNGRGLMIVDD 330

Query: 362 YAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH  + ++  +   +      RII VF         +       AL  AD  I+ +  P
Sbjct: 331 YAHHPSEVKATVSAAKNGWADSRIIAVFQPHLFSRTLEFADEYGWALSRADSVIIAEVYP 390

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA------------------IEMLNKQDVL 462
             E      AE   G+ G +      EA+R A                   E  +  ++L
Sbjct: 391 SREK-----AENFSGVNGNLV----AEAVRRAGGKHVEYIEGRETLSGSLREHCSDGNML 441

Query: 463 VVAGKGH 469
           +  G G 
Sbjct: 442 LFMGAGD 448


>gi|218899066|ref|YP_002447477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228902418|ref|ZP_04066572.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
 gi|228966866|ref|ZP_04127910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|226711880|sp|B7IUS2|MURD_BACC2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218545114|gb|ACK97508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228792965|gb|EEM40523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228857162|gb|EEN01668.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
          Length = 450

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 142/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKEIPIVTEVELAYRISK---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA   E+          + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMELSADTKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A     + DV+++
Sbjct: 386 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKEDDVVLL 422


>gi|117618995|ref|YP_858322.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|171460770|sp|A0KPX1|MURC_AERHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117560402|gb|ABK37350.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 484

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 135/417 (32%), Gaps = 48/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A    +          I VV    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSTAIKQDNPELLAARELRIPVVRRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  I   +        PT  I                    ++       + +  
Sbjct: 132 TTTSLVASIYAEADRD-----PTFVIGGLLNSAGTNARLGSSRY-LIAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +    +   A    F   LP    A++ 
Sbjct: 184 -------------HLQPMVSIVTNIEADHMDTYGGDFSKLKATFIDFLHNLPFYGLAVVC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEG-KDFDFLFP 305
            DD   + ++          ++ G      + +       N+ +  +  +   + +    
Sbjct: 231 VDDPVIRGMLPEIARP---TITYGLSDDADVQVLDFVQTSNRSRFRVRRKDAGELEVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDY 362
           LPG     NA  A  +    GI    ++  L K   V  RF+  G   T      +  DY
Sbjct: 288 LPGIHNALNAAAAIAVATEDGIGDDAIIRALAKFEGVGRRFQQYGEFETGRGKAMLVDDY 347

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H  + +++ +   R      R+++VF                  L   D+ ++ +    
Sbjct: 348 GHHPSEVKVTINAARAGWPEKRLVMVFQPHRYTRTRDLYEDFADVLSKVDVLVMLEVYAA 407

Query: 422 SEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E+P        +   I       P F+   + + A+   +  + + D+++  G G+
Sbjct: 408 GEEPIPGADGRALCRSIRSRGSLEPIFVATPDDVPAVLAGL--VGEGDLVLTQGAGN 462


>gi|215411869|ref|ZP_03420653.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298525647|ref|ZP_07013056.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298495441|gb|EFI30735.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 494

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 97/434 (22%), Positives = 141/434 (32%), Gaps = 67/434 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A+V + A         I    P LV    R    +  S +  K       L VTGT 
Sbjct: 73  GATAVVTTHA--------AIPKTNPELVEARRRGIPVVLRSAVLAKLMAGRTTLMVTGTH 124

Query: 125 GKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S +    Q  G   SF +G    +     +    +                   
Sbjct: 125 GKTTTTSMLIVALQHCGLDPSFAVG--GELGEAGTNAHHGSGD---------------CF 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               + S   L Q+            TN+  DH+D++ + +AY  A    F E +     
Sbjct: 168 VAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGA 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQV--------TIS 294
            ++  DD     + +RA   G RVL  G   G+ +    V                  ++
Sbjct: 222 LVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELA 281

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG     NAL A    + IG  +  VL+ L     V  RFE VGT   
Sbjct: 282 TAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGV 341

Query: 355 G---GRIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           G    R++ DYAH    +   L   R +      GR +VVF                 AL
Sbjct: 342 GKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGRAL 401

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLN 457
           + AD   V D     E P       + G+ G     +    +R                +
Sbjct: 402 NAADEVFVLDVYGAREQP-------LAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAAS 454

Query: 458 KQDVLVVAGKGHET 471
             DV+V  G G  T
Sbjct: 455 PGDVIVTMGAGDVT 468


>gi|282859040|ref|ZP_06268176.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
 gi|282588208|gb|EFB93377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
          Length = 443

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 126/351 (35%), Gaps = 37/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G   + +G    I +                   
Sbjct: 102 SKMICITGSNGKTTTTSLIFHIFKDAG---YDVGLAGNIGN----------------SLA 142

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             ++     +  +E SS  LD   +   +       N+  DH+D ++   + Y +AKMR+
Sbjct: 143 LQVAEDPHDYYIIELSSFQLDD--MYNFRANIAILLNITPDHLDRYEYKFENYADAKMRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +    ++S      D    KE+ K    A     S   +   I   +      +Q    
Sbjct: 201 IQNQTKEDSFIYWNDDPVIKKELEKFDVKAVRYPFSELKEKGSIGYIEQGQYTIEQPTPF 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++E +D      L G+  +YN+L A       GI    + + L     V  R E V    
Sbjct: 261 NMEQED----LSLTGKHNIYNSLAAGIAANIGGIKKENIRKSLSDFPGVEHRLEKV-CKV 315

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G +   D   T+  ++     + ++T+  ++++   G D+      I   +      + 
Sbjct: 316 AGVQYINDSKATN--VDACWYALESMTTPTVLII--GGKDKGNDYDAIKDLVKQKCRAVV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN      +K+     H      +  +  + +     +    D +++
Sbjct: 372 YLGADN------QKLHDNFDHLGITVRDTHSMKDCVAACAALAKPGDTVLL 416


>gi|325688217|gb|EGD30236.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK72]
          Length = 459

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 139/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q     G +    G    I   A     T  S
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQALTAGGQNGLLSG---NIGYPASQVAQTASS 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G                 ++         TNL   H+DYH + + Y
Sbjct: 170 KDTLVMELSSFQLMG-----------------IEDFHPQIAVITNLMPTHLDYHGSVEGY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +         +          K   A  
Sbjct: 213 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQATVVPFSTTE--------KVDGAYL 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 264 EGDVLTFRGEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGRVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA  + G+  +++  +  +A   A       D++++
Sbjct: 380 G-LKKMVILGQSAARVK-----RAADLAGV-SYLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|83814912|ref|YP_446443.1| Mur ligase family protein [Salinibacter ruber DSM 13855]
 gi|83756306|gb|ABC44419.1| Mur ligase family, glutamate ligase domain protein [Salinibacter
           ruber DSM 13855]
          Length = 543

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 131/376 (34%), Gaps = 32/376 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R F      RL  +   +++ +TG+ GK+S    V ++ ++      +    +T SS+  
Sbjct: 178 RGFKRQARRRLQTRSDLSVVGITGSYGKTSTKFIVAELLRQ------KYNVYATPSSYNT 231

Query: 159 DNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
              L      +L      L    G+ +        G      D  +  A   T +G  H+
Sbjct: 232 PMGLCLAVNEHLKPEHQVLVLEYGIRYP-------GDMDELCDIAEPDASVVTTIGVAHL 284

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           +   +Q      K  L E   P + PA++ ADD     + +RA     R+ + G+    I
Sbjct: 285 ETMGSQDRIAAEKGVLVERTAP-DGPAVLNADDERVAAMAERAAGPVWRISTEGHPDADI 343

Query: 278 HLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               +               G    F   L G   V N L+A  +  ++G+    +   +
Sbjct: 344 TADDIRYDTGGTAFDVTDDTGTTVTFETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAV 403

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVVFGCGGDR 394
            ++  +  R +     SRG    +D A  SN +     ++ +  +  G+ ++V     + 
Sbjct: 404 RRVEPIEHRLQL---RSRGDVTIIDDAFNSNPVGARNAVEILSEMDGGKRVIVTPGMVEL 460

Query: 395 DQGKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIE 447
              +           A    D+ ++  +    E    I+A +  G       +   +  E
Sbjct: 461 GDRQWTENKDFGVVLAQHDLDLVVLVGE----EQTAPIQAGLSEGGAPAERIMVVDSLAE 516

Query: 448 AIRTAIEMLNKQDVLV 463
           A       L   DV++
Sbjct: 517 AQEILERRLGPGDVVL 532


>gi|320531623|ref|ZP_08032565.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136152|gb|EFW28158.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 524

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 148/440 (33%), Gaps = 71/440 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS+A    +            V+  + + L+L A  L      + +AV G  GK++ +
Sbjct: 89  VVVSTAIKETNPELAEARRRGQEVIHRS-QALALAAQGL------DFVAVAGAHGKTTTS 141

Query: 131 SFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + +    +G   S    G    + + A            L    + ++    +  S  
Sbjct: 142 GMLAEALTDAGADPSFAIGGVVRALGTGAH-----------LGSGSALVAEADESDRSFL 190

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S                  TN+  DH+D + T +A+  A    F   L      +  A
Sbjct: 191 NYS------------PRVEIVTNVEPDHLDSYGTAEAFEAA-FVDFAHRLVPGGLLVACA 237

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--------- 299
            DA +  + + A   G RV++  + G       V        + I   G           
Sbjct: 238 ADAGALRLAQSAAAEGLRVVTYSFGGPDTLPGGVLVGEGHVHLDIQDRGASSTQALLTLT 297

Query: 300 -------------------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                               + +  +PG+    +A  A    I +G++ A +   L    
Sbjct: 298 TATDRESAGGTGEEPSRSPVELVLAVPGDHVALDAAGAWAAGIELGVEPARMARALGVFG 357

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQG 397
               RFE  G  + G R+  DYAH    +E +L+  R +     GR++V+F         
Sbjct: 358 GTGRRFEDRG-EADGVRVIDDYAHHPTEIEALLRTARGVAQERGGRVLVLFQPHLFSRTR 416

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHGIPG--FIEKGNRIEAIRT 451
                   AL LAD  +VTD  P  E     P      +   +PG        R++A R 
Sbjct: 417 AFADRFGQALALADAVVVTDVYPARETQADFPGVTGDTVAQRVPGGRARFVAERLDAARA 476

Query: 452 AIEMLNKQDVLVVAGKGHET 471
             +     D+L+  G G  T
Sbjct: 477 VADSARPGDLLLTVGAGDVT 496


>gi|257470793|ref|ZP_05634883.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium ulcerans ATCC
           49185]
 gi|317064997|ref|ZP_07929482.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium ulcerans ATCC
           49185]
 gi|313690673|gb|EFS27508.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium ulcerans ATCC
           49185]
          Length = 451

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 141/421 (33%), Gaps = 52/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + ++ SSA    +       +  I +V        L        + E  +AV GT G
Sbjct: 59  KGCDMVIASSAIKHDNPEYKYAVDNGIKIVKRGELLAMLL-------NDETGIAVAGTHG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +             S+L        
Sbjct: 112 KTTTSSMMSSVMLDLDPTIVVGGILPEIGSNAKPGKSEYFVAEADESDNSFL-------- 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +K      TN+  DH+D H   +    +  +  ++   +    +
Sbjct: 164 ---------------FMKPSYAVITNVEEDHLDTHGCLENINKSFSQFIDQTKNE---VV 205

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLF 304
           +  D    K+++++         S+  +   I    +   + K    I++ GK+   +  
Sbjct: 206 VCIDCENLKKLIEKKEKEKIVTYSIRDREADIFAYDIQIENGKTSYNIAIRGKNAGRYTI 265

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYA 363
            +PG   + N+L         G++   + + LE       R++ +  N  +G +I  DYA
Sbjct: 266 SIPGYHNILNSLPVIYYAKKFGVNEEFLKKALENFKGSKRRYDILYCNEDKGIKIIDDYA 325

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H    ++  L+  ++I   ++ ++F               K A D A+  ++       E
Sbjct: 326 HHPTEIKATLQGAKSIEHEKLTIIFQPHRYSRVKFLLQNFKDAFDGAEEVLLLPIYSAGE 385

Query: 424 DPE-----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             E     +    I+      IEK +    I   I              GHE    +  G
Sbjct: 386 KDEFGVTVEDLGNILKNEKVVIEKNSEK--IDERILNCQ----------GHEVFMFMGAG 433

Query: 479 E 479
           +
Sbjct: 434 D 434


>gi|258654962|ref|YP_003204118.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
 gi|258558187|gb|ACV81129.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
          Length = 914

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 129/392 (32%), Gaps = 51/392 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++ +  +  I +  G     +G TST      D  +          A  
Sbjct: 505 PIVAVTGTNGKTTCSRMIGHIFKSMGRK---VGMTSTDGVVIDDRLVIRSDASGPRSARM 561

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L +  V     E +  G+ +  L   +       N+  DH+      T +     K  +
Sbjct: 562 VLQNPRVDFAVFEVARGGILREGLGYPRNDVAVVLNVAPDHLGLRGIDTVEQLAQVKQVI 621

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E  +PK   A++ ADD     V          V+    +     +   C    K  +  
Sbjct: 622 VEA-VPKSGSAVLNADDPL---VAGMRRACSGEVVWFSTEPDNRMISDHCRRGGKAVILE 677

Query: 294 SVEGKDFDFLFPLPGE------------------FQVYNALVAAGLCIAIGIDSALVLEH 335
             +  +   L                        F V NA+ AA      G     +   
Sbjct: 678 RSDLGELIVLVHGRRRMPLAYTHLVPATFGGKAMFNVQNAMAAAAAAYCAGAHLGDIRGG 737

Query: 336 LEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSL-------EMILKNIRTITSGRI 384
           L          PGR     T  RG ++ VDY H + ++       +   ++  +    + 
Sbjct: 738 LRSFTPSYYSAPGRMNL--TEVRGVKVIVDYCHNAPAMVALGAFVDRFFEDSASWERPQR 795

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHG-------- 435
           I V    GDR       +G  A    D  IV +D   R   P +    I+ G        
Sbjct: 796 IGVIATAGDRRDQDMIDLGLEAAKHFDRIIVREDERLRGRAPGETAGLIVQGAKEAQAQG 855

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +       + IEA + A+E  N  D+++V 
Sbjct: 856 GRVKQIEVVLDEIEATKVAVEWANPGDLVLVC 887


>gi|189462921|ref|ZP_03011706.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
 gi|189430348|gb|EDU99332.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
          Length = 444

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 124/363 (34%), Gaps = 42/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I +++GL+    G               
Sbjct: 95  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIG------------ 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +           N+  DH+D +   
Sbjct: 140 -------QSLAYQVAECNYDYYVIELSSFQLDN--MYKFHANIAVLMNITPDHLDRYDYK 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +     ++      D    KE+ K   +      +   +       + 
Sbjct: 191 MQNYVDAKFRIIQNQTDNDAFIFWNDDPVIQKELHKYGIHGHYYPFAEKKEEGLAAFVEQ 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++  + +  ++E ++      L G   ++N++ A       GI    + E L     V
Sbjct: 251 NKVYFTKPIEFNMEQEE----LALTGTHNLFNSMAAGISANIAGIRKECIREALSDFKGV 306

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V T  RG     D   T+  +      + ++ +    V+   G D+      I 
Sbjct: 307 EHRLEKV-TRVRGVDYINDSKATN--VNSCWYALNSMKTKT--VLILGGKDKGNDYNEIA 361

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDV 461
             +    + +  +   N +         +   G    I +  +  +A+  A  M  K + 
Sbjct: 362 DLVKEKCSGLIFLGLHNEK-------LHDFFDGFGLPIADVQSMKDAVDAAYRMAKKGET 414

Query: 462 LVV 464
           +++
Sbjct: 415 VLL 417


>gi|118602740|ref|YP_903955.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|166224725|sp|A1AX27|MURC_RUTMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118567679|gb|ABL02484.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 469

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 146/428 (34%), Gaps = 48/428 (11%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H      I   A+ IVVSSA    +          I VV    + L+      +G     
Sbjct: 62  HKHHQDNIKN-AQVIVVSSAIKDNNLEVIKAHQLNIPVVPRA-EMLAELMRFRFG----- 114

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S +  I   +    ++ IG     S        +          ++
Sbjct: 115 -IAIAGTHGKTTTTSIITHILNVAELDPTYIIGGILNSSGINAKLGESDY-------LIA 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+  +             F 
Sbjct: 167 EADESDASFL---------------HLQPMLSVITNIDYDHMVTYDNDYQNLKDAFIKFS 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
             LP     I+ ADD    E++   H     +++ G+  G  I    V  +  +    + 
Sbjct: 212 ANLPFYGACIMCADDEGVNEILNSIHRP---LITYGFNNGTDIQAVNVKQVGMQMYFDVI 268

Query: 295 VE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
            +   K       L G+  + N L A G+C  + I + ++ + L     V  R +  G  
Sbjct: 269 YDKYTKQIPIKLNLIGKHNILNTLAAIGICCELNIKTNIIQKALANFSGVARRLDHHGKL 328

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             N+    ++ DYAH    +  + ++++ T    R++V+F                  L 
Sbjct: 329 NINNAQVSLFDDYAHHPKEISAVFESLKNTYQDKRLVVIFQPHRYSRTRDLFDDFVYTLS 388

Query: 409 LADIAIVTDDNPRSEDP-EKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDV 461
            ADI I+ +  P  E P   I +  +            +   N  E +     ++N  D+
Sbjct: 389 SADILILLNIYPAQEKPIAHINSSTLANAIRRSSGLNPMVIKNPKEILTVLPSIVNNNDI 448

Query: 462 LVVAGKGH 469
           L++ G G 
Sbjct: 449 LLILGAGD 456


>gi|294778000|ref|ZP_06743434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
 gi|294448058|gb|EFG16624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
          Length = 444

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 122/362 (33%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I +++G++    G               
Sbjct: 95  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG------------ 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++     +  +E SS  LD   +           N+  DH+D +   
Sbjct: 140 -------QSLAYQVAECNYDYYVIELSSFQLDN--MYKFHANIAVLMNITPDHLDRYDHQ 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P ++      D    +E+ K   +      +   +       + 
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAYVEQ 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++  + +  ++E ++      L G   ++N++ A       GI    + E L     V
Sbjct: 251 DKVYFTEPIAFNMEQEE----LALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGV 306

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A   NS    L++++T       ++   G D+      I 
Sbjct: 307 EHRLEKVCRVRGVDYINDSKATNVNSCWYALQSMKT-----KTILILGGKDKGNDYNEIA 361

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      +  +   N      EK+            +  +  +A+  A  M  K + +
Sbjct: 362 DLVKEKCTGLIYMGLHN------EKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|291326816|ref|ZP_06125975.2| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
 gi|291312715|gb|EFE53168.1| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
          Length = 472

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 152/428 (35%), Gaps = 52/428 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ +   A  +VVS+A S ++          I V+    + L+      +G      +AV
Sbjct: 58  PENVEN-ASVVVVSTAISSENPEIQAAKELRIPVIRRA-EMLAELMRYRHG------IAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++  + +  I  ++GL    +      S+          S  YL   ++     
Sbjct: 110 AGTHGKTTTTAMISGIYAQAGLDPTFVNGGLVKSAGTH---ARLGSSRYL---IAEADES 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             + +                ++ +    TN+  DH+D +Q            F   LP 
Sbjct: 164 DASFL---------------HLQPLVAVVTNIEADHMDTYQGDFDNLTNTFINFLHNLPF 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK- 298
              A++  DD   + ++ +       + + G+ +   + + +     N+   TI+ E   
Sbjct: 209 YGRAVMCIDDPVIRSLLPKIGR---YITTYGFSEDADVRITQYEQKGNQGFFTIARENMP 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TN 352
           +   +   PG     NA  A  +    GID   +L  L +      RF+F+G       N
Sbjct: 266 ELTVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNFPLRNVN 325

Query: 353 SRGGRI--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            + G +    DY H    ++  +K  R      RI++VF                  L  
Sbjct: 326 GKEGEVMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFVNVLGQ 385

Query: 410 ADIAIVTDDNPRSED--PEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEM-LNKQDV 461
            D+ ++ D     E   P      +   I G      I   + IE I   +   L++ D+
Sbjct: 386 VDVLLMLDVYSAGEKHVPGADSRSLCRSIRGRGQIDPIYVAD-IEQIPHILAQTLDENDL 444

Query: 462 LVVAGKGH 469
           ++V G G+
Sbjct: 445 ILVQGAGN 452


>gi|42520363|ref|NP_966278.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|48428303|sp|P61683|MURC_WOLPM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|42410101|gb|AAS14212.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 498

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 143/423 (33%), Gaps = 51/423 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +       N              + A  + GK+   ++AV+G+SGK+
Sbjct: 86  AQIVVHSSAIEFDNVELIAAKNNN----KTVLHRSDILAEIMKGKY---VIAVSGSSGKT 138

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   SG     I  T T+       +        L  + ++L     +  ++
Sbjct: 139 TTTAMIASIFDHSG-----IDATVTVGGILNSYKSNFK----LGGSDTFLIEADESDGTM 189

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         I       T++  DHIDY+ T     NA  +          P  + 
Sbjct: 190 L------------KIPAKIAVITSINNDHIDYYGTFDNIKNAFSQFVNNAGSAVLPDSVD 237

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG---------------KFIHLKKVCAIHNKQQVT 292
            D      +     N   R  ++                   +    K  C   + Q VT
Sbjct: 238 IDYDAGNSITFGFENGSIRASNIKQHANSIEFDVLNNWIPALRAGMTKGKCTEMSSQCVT 297

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +         L    G  +V NAL A  + I +GI  A + + L +   V  RF  +  +
Sbjct: 298 LGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARRFSLIA-D 356

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +G ++  DYAH  N +   L   R+IT G++I +                     + D 
Sbjct: 357 IKGVKLIEDYAHHPNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRIFMMFDY 416

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVA 465
            I+T  +P  + P      + I+  +I       +  N    I   I    +  ++++  
Sbjct: 417 VILTPVHPPEDKPIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSNIVLFI 476

Query: 466 GKG 468
           G G
Sbjct: 477 GAG 479


>gi|322517040|ref|ZP_08069927.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
 gi|322124387|gb|EFX95889.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
          Length = 450

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 147/418 (35%), Gaps = 59/418 (14%)

Query: 61  PQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
            QA+  +G + +       L D +  +    P +  DN      + A  L  + P     
Sbjct: 49  AQALLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNP-----MVARALEKEIPVWTEV 103

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + +  +    G S    G    I   A +   +  +
Sbjct: 104 ELAYLVSEAPIIGITGSNGKTTTTTMIADVLNYGGKSGVLSG---NIGFPASEVAQSVTN 160

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G                 ++         TNL   HIDYH + + Y
Sbjct: 161 QDTLVMELSSFQLMG-----------------IESFHPHIAVITNLMPTHIDYHGSFEGY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + +  +  +   I+  +   +KE+  + +       +V  +       +   ++
Sbjct: 204 VAAKWNI-QNKMTSDDFVILNFNQDLAKELATQTNAQVVPFSTV--EKVDGAYLENGGLY 260

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            K ++ +  +         +PG   V NAL    +     + +  + E L     V  R 
Sbjct: 261 FKGELVMHAD------ELGVPGSHNVENALATIAVAKLSSVSNQAIKETLSSFGGVKHRL 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +FV T     + Y D   T+  +    K +        +++   G DR      ++  I 
Sbjct: 315 QFVDTIDN-VKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELIPDII 370

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+ +  PR +     RA    G+   ++  +  +A R A E  +  DV+++
Sbjct: 371 G-LKKMVILGESAPRVK-----RAADRAGVT-HLDAKDVADATRIAFEQASAGDVVLL 421


>gi|315122420|ref|YP_004062909.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495822|gb|ADR52421.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 475

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 149/419 (35%), Gaps = 51/419 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +VVS+A    +          I ++  +     L  +R         ++V+GT GK+
Sbjct: 67  AEILVVSTAIDKDNVECVAARERNIPIIYRSEMLAGLMRAR-------KSISVSGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  + ++ G     +     ++S+  + R+ T                    + V
Sbjct: 120 TTTSLIAALLEQ-GNLDPTVINGGIVNSYGTNARIGTGEW-----------------IVV 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        +L          TN+  +H+DY+    A   A  + F + +P    A++ 
Sbjct: 162 EADESDGTFIKLPS---DIVVVTNIDPEHLDYYSDFDAIRAAFYK-FIDNVPFYGFAVVC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEG-------KD 299
            D      ++ R  N   ++++ G +    +    +     +    ++++G       + 
Sbjct: 218 LDHPEILSLVARIQNR--KIITYGQHPQADVCYSNIRKYSGRSIFDVTLQGSLTPTPIEI 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + PL G + + NA  A  +   +G+ S  + + L     +  RF  +G       I+
Sbjct: 276 KDLVLPLIGNYNISNASAAIAIAHRLGLSSEDIAKGLAGFSGIKRRFTLIGIW-NDVHIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    +  +L  +R I  G++I +                      +D  +++   
Sbjct: 335 DDYGHHPVEISAVLSAVRQICPGKVIAIHQPHRYTRLSTLFDQFSKCFVDSDTVLISPVY 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA---------IRTAIEMLNKQDVLVVAGKGH 469
              E    I       +   I++    EA         +   ++++   D ++  G G+
Sbjct: 395 AAGEK--VISGFSSQELVQKIKESGHPEAYYLDSFDHLVSKILDIVEPGDFIIFFGAGN 451


>gi|307154434|ref|YP_003889818.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
 gi|306984662|gb|ADN16543.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
          Length = 498

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 133/418 (31%), Gaps = 53/418 (12%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+ S+A +    ++ A   +  PI    +    L               +AV GT GK++
Sbjct: 112 IICSTAIAANNAEYQAAKENGYPIFHRSDVLAALIK---------DYYSIAVAGTHGKTT 162

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL    I                    +   +  + L          +
Sbjct: 163 TSSLIGYMLLKAGLDPTII----------------VGGEVDAWQGNARLGQGRFLVAEAD 206

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++Q  +       ++FE    +    I   
Sbjct: 207 ESDGSLAKH-----SPRIGIVTNIELDHPDHYQNLEEVIQT-FQIFER---QCETLIACI 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
           D      V +R +      L    +  +  +K V        V +   G+        L 
Sbjct: 258 DCET---VRQRLNPQITYSLDPEKEADYT-VKNVVYHAQGSLVEVWERGQYLGQMNISLL 313

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V N+L A  +   +G+D   +   +        RFE  G    G     DYAH  +
Sbjct: 314 GQHNVSNSLAAVAVGRKLGLDFEEIAVAVATFEGAKRRFEHKGH-CNGITFIDDYAHHPS 372

Query: 368 SLEMILKNIR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +   L+  R         R++ +F                 +   AD+ I+TD     E
Sbjct: 373 EIRCTLEAARLRSHQDCYSRVVAIFQPHRYSRTATFMDEFATSFSDADVVIITDIYSAGE 432

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                   +++   I           +        +E+L   D+ +  G G+    I+
Sbjct: 433 VNLGQMSGQQVADAISCYHKQVYYHPSLKSLGSFLVEILQPGDLALFLGAGN-LNQII 489


>gi|253997368|ref|YP_003049432.1| UDP-N-acetylmuramate--L-alanine ligase [Methylotenera mobilis JLW8]
 gi|253984047|gb|ACT48905.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera mobilis JLW8]
          Length = 479

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 150/415 (36%), Gaps = 58/415 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +  +          I VV      L+       G      +AV GT GK++  S +  I 
Sbjct: 75  NEANPEVKAARAKKIPVVPRALM-LAELMRFKQG------IAVAGTHGKTTTTSLIASIL 127

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +G+      PT  I                L  A +        ++  EA        
Sbjct: 128 GEAGMD-----PTFVIGGK-------------LEAANANAKLGTGDYIVAEADESDAS-- 167

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               +  +    TN+ +DH+D ++       +    F + LP    A++  DDA  +E++
Sbjct: 168 -FLHLTPVMAVVTNIDQDHMDTYEHSFEKLKSAFVEFLQQLPFWGMAVVCVDDANIREIL 226

Query: 258 KRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTI-SVEG--KDFDFLFPLPGEFQVY 313
            R       V++ G         K V A   K   T+  + G   +FD    LPG   V 
Sbjct: 227 PRVTKP---VMTYGLSEDARIRAKNVRADDGKMHFTVQRINGVTTEFDVTLNLPGNHYVL 283

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---------NSRGGRIYVDYAH 364
           NAL A  +   + +  A +++ L++   V  RFE  G          ++    +  DY H
Sbjct: 284 NALAAIAIASELNVPDAAIIKALKEFKGVGRRFERYGEVPAMPRNAASAGTFTLIDDYGH 343

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++ ++   R    + R+++ F                  L  AD+ ++T+     E
Sbjct: 344 HPVEMQAVIAAARGAFPNRRLVMAFQPHRYTRTRDCFEDFVRVLSSADVVLLTEVYSAGE 403

Query: 424 ------DPEKIRAEI-IHGI--PGFIEKGNRI-EAIRTAIEMLNKQDVLVVAGKG 468
                 D   +   I + G   P F+E  + + +AI   +++ +  DV++V G G
Sbjct: 404 ASIVAADTRSLIRAIRVAGKVEPLFVETTDELPQAI---LDIAHADDVVIVMGAG 455


>gi|262066314|ref|ZP_06025926.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380009|gb|EFE87527.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 463

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 147/421 (34%), Gaps = 53/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ ++ S+A    +          I ++    + L+   +R  G      +A+ GT G
Sbjct: 59  KGSDFVIASTAIKETNPEYAYAKKNGIKILKRG-ELLAKLLNRETG------IAIAGTHG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +  +   +    G    I S A+  +            ++       + +
Sbjct: 112 KTTTSSMLSAVMLKKDPTIVVGGILPEIKSNAKPGKSEY--------FIAEADESDNSFL 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H   +     K    E +L  +  +I
Sbjct: 164 FM---------------NPEYSVITNIDADHLDVHGNLENI---KKSFIEFILHTQKESI 205

Query: 246 IYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I  D       + K          S+  +   I  K +  ++ K    + V  +   +F 
Sbjct: 206 ICMDSKNLMDAISKLPEEKSVTTYSIKDENANICAKNIRIVNRKTIFEVYVNKELKGEFS 265

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSR 354
             +PGE  + N+L    L +  G++   + E L +      R++ +         G  ++
Sbjct: 266 LNIPGEHNIQNSLPVIYLALKFGLNKEEIQEALNQFKGSKRRYDVLYDQELENGYGNKTK 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             RI  DYAH    ++  LK I+++ + R++ +F               K A    D  I
Sbjct: 326 KVRIVDDYAHHPTEIKATLKAIKSVDNSRLVAIFQPHRYSRVHFLLDEFKDAFVDVDKVI 385

Query: 415 VTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +       E        E ++  I HG    +E  N  + I+  +  + K    +  G G
Sbjct: 386 LLPIYAAGEKNEFNVSSETLKEHINHGN---VELMNEWKDIKRYVTRVKKDSTYIFMGAG 442

Query: 469 H 469
            
Sbjct: 443 D 443


>gi|161504749|ref|YP_001571861.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189082495|sp|A9MQC1|MURC_SALAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160866096|gb|ABX22719.1| hypothetical protein SARI_02872 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 491

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 146/436 (33%), Gaps = 65/436 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+     + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSDDADVRVEDYQQIGPQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  D       PG     NA  A  +    GID   +L  LE       RF+F+G   
Sbjct: 276 RQGMPDLRVTLNAPGRHNALNATAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R       ++++F                
Sbjct: 336 LEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             L   D  ++ D  P  E P            IR     G    I   +  + I T + 
Sbjct: 396 NVLTQVDALLMLDVYPAGETPIPGADSRSLCRTIRN---RGKIDPILVSDPAQ-IATILA 451

Query: 455 -MLNKQDVLVVAGKGH 469
            +L   D+++V G G+
Sbjct: 452 PVLTGNDLILVQGAGN 467


>gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 431

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 140/387 (36%), Gaps = 43/387 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS  Y    ++I+A+TGT+GK+++ + V +I  + G S         I     D    
Sbjct: 82  EFASYFYK--TKDIVAITGTNGKTTITTLVNEILNKVGKSYA----VGNIGVGVMDVIDY 135

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P                   +  EASS  L    +D         TN+  DH+D+H+T 
Sbjct: 136 DP-----------------KFIVCEASSFQLA--YIDKFHPHVAVITNITSDHLDWHKTV 176

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKV 282
           + Y  AK  +++ L  ++   I+ A   Y K +     N        +G  G F   +++
Sbjct: 177 ENYRKAKENIYKNL-EEDDFLILGASCDYVKTINAGVKNTFYYSYDDLGRPGLFTKDEEI 235

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              H    +   ++  D        G   + NA+ A     ++G+D  ++++ ++    V
Sbjct: 236 IFRHFDGTLENIMKVSDVFIK----GRHNIENAMAAILSAYSLGVDLEIIVDTIKNFKGV 291

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R EFV T +             +S ++ LK           V+   G D+    + ++
Sbjct: 292 EHRIEFVRTFNGISYYNDSKGTNPDSTDVALKAFE------KSVLIIGGYDKGSDFKKLL 345

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                 +  + ++          E I  E            +  EA+  A  +  +   +
Sbjct: 346 EDNKDKITSLVVM------GATSELIIKEATELGIETTRVKDMEEAVSVATTIARENHSV 399

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDII 489
           V+      +  +  N E +     +I+
Sbjct: 400 VLLSPACASWDMYPNYEVRGRHFKEIV 426


>gi|71066305|ref|YP_265032.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter arcticus
           273-4]
 gi|109892725|sp|Q4FQW0|MURC_PSYA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71039290|gb|AAZ19598.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter arcticus
           273-4]
          Length = 479

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 152/436 (34%), Gaps = 57/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + IA  A+ IVVSSA    +          + VV      L       +G    
Sbjct: 72  GHD--SKNIAN-ADVIVVSSAIDRSNPEVKAALEARLPVVRRA-DMLGELMRYRHG---- 123

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ G  GK++  S +  +          + PT  I     +      +       ++
Sbjct: 124 --IAIAGAHGKTTTTSLLTTMMAE-----GNLDPTYVIGG-KLNASGKNAALGSSRFLIA 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                +  +A   TN+ +DH++ +        A    F 
Sbjct: 176 EADESDASFL---------------SLHPMAAIVTNIDQDHMETYGNSFDKLKAAYIQFL 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P    A++  DD    E+     + G  VL+ G +  F  ++ V  +    +   +V
Sbjct: 221 QNMPFYGLAVVCGDDP---ELYAMIDDIGRPVLTFGLEP-FNDVQAVDLVTEGTKTHFTV 276

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
              + +       +PG   VYNAL A  +    G+D A +   L+K   V  RFE    V
Sbjct: 277 LRRDHEPLRLTLNIPGVHNVYNALAAITMATDEGVDDAAITRALQKFEGVGRRFEQHASV 336

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +     +  DY H    ++  +K  R +    R++++F                  L 
Sbjct: 337 TIDDGDVLLIDDYGHHPKEVDATIKAARQSFPERRLVMLFQPHRYSRTRDCFDDFVEVLS 396

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI-IHGI--PGFIEKGNRIEAIRTAIE-MLNK 458
             D  ++ D     E P      + +   I + G   P  ++K N    I   ++ +L  
Sbjct: 397 SVDELLLLDVYSAGESPIAGADTKALARSIRLRGAVEPTIVDKKN----IAAVMQRLLKA 452

Query: 459 QDVLVVAGKGHETVHI 474
            D+L+  G G+    I
Sbjct: 453 NDMLITQGAGN-VGQI 467


>gi|317129971|ref|YP_004096253.1| UDP-N-acetylmuramate/alanine ligase [Bacillus cellulosilyticus DSM
           2522]
 gi|315474919|gb|ADU31522.1| UDP-N-acetylmuramate/alanine ligase [Bacillus cellulosilyticus DSM
           2522]
          Length = 435

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 140/409 (34%), Gaps = 63/409 (15%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S AY+ ++    A +  N P+    N   FL  F  +         +AVTG+ GK+S
Sbjct: 64  LIASPAYNEENEEIKAAMEQNIPVNKYPN---FLGEFIQQF------TSIAVTGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +S+ IG   T             +  Y    L Y            
Sbjct: 115 TTGLLAHVLQEAKPTSYLIG-DGTGKGEKDSEYFVFEACEYRRHFLHY------------ 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-Y 247
                                TN+  DH DY    Q  F+A    F+E+  +    II  
Sbjct: 162 --------------SPDYAIMTNIDFDHPDYFSGVQDVFDA----FQEMAMQVKKGIIAC 203

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DD Y +++     NA   V+  G+  +     K + +  N     + V    +  F  P
Sbjct: 204 GDDNYLQQL-----NAQVPVVYYGFNEEHDFCGKNIRSDENGTHFDVYVRSSFYGSFTIP 258

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+  V NAL    LC    +D  ++   L     V  RF      ++   +  DYAH 
Sbjct: 259 GYGKHNVLNALAVIALCKYEEVDINIIQSRLITFSGVKRRFSEKLVGNQ--VLIDDYAHH 316

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSE 423
              + + +   R    +  +I VF                  L  AD   + D  +   E
Sbjct: 317 PTEIAVTIDATRKKYPNREVIAVFQPHTFTRTKTFLDEFANCLQAADKVFLCDIFSSARE 376

Query: 424 DPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QD-VLVVAGKGH 469
           +   +   +++  IP               I+ L+K +D V++  G G 
Sbjct: 377 NKGDLSIQDLLELIPDASTIS------EETIDQLSKYEDAVILFMGAGD 419


>gi|333029403|ref|ZP_08457464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
 gi|332740000|gb|EGJ70482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
          Length = 441

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 133/386 (34%), Gaps = 45/386 (11%)

Query: 83  SATIRSNTPILV-VDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRS 140
           S  I    PI+  V + +    +      G++    ++ +TG++GK++  S +  +  ++
Sbjct: 70  SPGIPDTAPIIQQVKD-KDIPVISEIEFAGRYSNAKMICITGSNGKTTTTSLLYHMFHKA 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G +    G                            ++ +      +E SS  LD   + 
Sbjct: 129 GKNVGLAGNIG-------------------KSLARQVAEENHEFYIIELSSFQLDN--MY 167

Query: 201 GIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             K       N+  DH+D +      Y +AK R+ +    K+       D    +++  R
Sbjct: 168 NFKADIAILLNITPDHLDRYDNCMDKYIDAKFRIIQNQTDKDHFIYWSDDPILKEQINHR 227

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             +A     SV +   F +      I +   ++I  E         L G   +YN + A 
Sbjct: 228 TIHATKNPFSVEHS-DFTYKLGNKIILDGGNLSIDKE------FVKLSGVHNLYNTMAAI 280

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                  +    + + L   + V  R E+V T   G R   D   T+  ++     ++ +
Sbjct: 281 TAAYLSKLSPMEIEQGLNSFNGVEHRLEYVDT-IHGVRFINDSKATN--VDSCWYALQAM 337

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +  I+++   G D+      I   I      +  +  +N +         +   G    
Sbjct: 338 HNSTILIL--GGKDKGNDYNKITPLIKEKCTGLVFLGANNTK-------LHQFFDGFNIP 388

Query: 440 IEKGNR-IEAIRTAIEMLNKQDVLVV 464
           IE  N   +A+  A  +    D +++
Sbjct: 389 IEDTNNMTDAVVKAKGLAKSGDTVLL 414


>gi|78188427|ref|YP_378765.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Chlorobium
           chlorochromatii CaD3]
 gi|78170626|gb|ABB27722.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
          Length = 494

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 135/417 (32%), Gaps = 43/417 (10%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+VV +A S    +    +  +  +L + +      L    L   +   ++A  GT GK+
Sbjct: 89  AVVVGNAISRGNPELEYALEQHLELLAMPD------LVRRHLIANNTSVVVA--GTHGKT 140

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  + +  GL    +     I           P    L    S     G      
Sbjct: 141 TTTSLVAWMLEAGGLQPGFL-----IGG--------IPENFGLGCRPSAGEGAGFFVTEG 187

Query: 188 EASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +         R   +  +       N+  DH D   + +    +  RLF  L+P+    +
Sbjct: 188 DEYDTAFFDKRSKFLLYRPDIAIINNVEFDHADIFNSLEDIKRS-FRLFVNLIPRNGLLL 246

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           +  DD  +   ++ A  A C V               + +        +   GK    F 
Sbjct: 247 VNGDDPVA---LECAEKAFCPVERFALHANAEWSATNIHSEEEGSSFELLHHGKSVGTFH 303

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G + + NA+ A       G+    + + L        R E +G  + G  +  D+A
Sbjct: 304 VPLFGNYNIMNAIAALAAAYRCGVSFEALADGLPHFQRPKRRMELLGEFADGITLIEDFA 363

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRS 422
           H   ++ + L+ I    +GR IV           +     ++A   A    +V     R 
Sbjct: 364 HHPTAIRVTLEAIAQRYNGRRIVACFEPRSNTTTRNIFQEELASCFAPASVVVLGKVHRP 423

Query: 423 E-------DPEKIRAEIIHGIPGFIEKGNRIEA----IRTAIEMLNKQDVLVVAGKG 468
           E       +   ++ ++          GN  +     IR         DV+V+   G
Sbjct: 424 ERYGDHALNTALLQEQLQSAGKEVFLAGNDADYPADIIRYLEAHRRHGDVVVLLSNG 480


>gi|227543135|ref|ZP_03973184.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181123|gb|EEI62095.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 491

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 135/449 (30%), Gaps = 81/449 (18%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSS 128
                +    A I  + P LV              L A  +  +     + + GT GK+S
Sbjct: 58  ERPNVVVTSFAAIPKDNPELVAARELGIPVIRRSDLLAELMKDRI---QVLLAGTHGKTS 114

Query: 129 VASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             S      Q++G   SF IG     +     +           ++ + L S        
Sbjct: 115 TTSMAVVAMQQAGLDPSFAIGGQLNKAGTNAHDGTGRAFVAEADESDASLLSY------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  DH+D+ +T + YF         +       +  
Sbjct: 168 ---------------APDVAVVTNIEPDHLDFFKTPEKYFEVFDSFAAVVAENGGELVAC 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-----------SVE 296
            +D ++  + + A      V   G+    +    +  +    +VT+            V 
Sbjct: 213 VEDEHALALARTAPGT---VYGYGFAATLVENPTITPLVAVDEVTLTAYGSVATMHVHVP 269

Query: 297 GKD---FDFLFPLPGEFQVYNALVAAGLCIAI---------GIDSALVLEHLEKLHVVPG 344
           G D    +     PG   V NA  A G                    +   +     V  
Sbjct: 270 GGDVVPVEVTVRTPGTHMVLNAAAALGAMFLASKRENGTFDATTLNQLAAGISDFTGVRR 329

Query: 345 RFEFVGTNSR----GGRIYVDYAHTSNSLEMILKNIRTITSG-------------RIIVV 387
           RFE  GT  R    G ++Y DYAH    +  +L+  +    G              +IV 
Sbjct: 330 RFELKGTVERGPLAGVKVYDDYAHHPTEVAAVLRACKAKAVGEARAAGKPDDERPHVIVC 389

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEK 442
           F         K       AL LAD AIV D     E+P       + AE I     ++  
Sbjct: 390 FQPHLYSRTLKFAEEFGAALSLADHAIVLDIYGAREEPVEGVTGALVAEKIDSTGEYVPG 449

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            N  +A      +    D+++  G G  T
Sbjct: 450 FN--DAPAAVARVAKPGDIVLTMGAGSVT 476


>gi|262373760|ref|ZP_06067038.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter junii SH205]
 gi|262311513|gb|EEY92599.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter junii SH205]
          Length = 481

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 87/432 (20%), Positives = 147/432 (34%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH      I   A  +VVS+A   ++    A I   TPI+      + L       +G  
Sbjct: 72  GHS--ADNIKN-ANVLVVSTAIDPENPEIKAAIEQRTPIV---RRAEMLGELMRYRHG-- 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S +  +          + PT  I                +  A
Sbjct: 124 ----IAVAGTHGKTTTTSLLTTMLAEE-----NLDPTYVIGGLLN--------STGVNAA 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L             +AS           ++ +A   TN+  DH+D ++            
Sbjct: 167 LGESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQ 218

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    A++  DDA  +E++ R       VL+ G+ +   +    V     +   T
Sbjct: 219 FLHNLPFYGLAVVCGDDANIREILPRVGRP---VLTYGFNEDNDVRAVDVEQDGMRSHFT 275

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + ++        PG   V NAL A G+    G+    +   LE    V  RF+  G 
Sbjct: 276 VLRKDREPLRVTINQPGLHNVLNALAAIGVATDEGVSDGAICRALEGFSGVGRRFQVQGE 335

Query: 352 NSRG---GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              G    ++  DY H    +E  +K  R +    R++++F                  L
Sbjct: 336 FEVGEGTVKLVDDYGHHPKEVEATIKAARASHPDRRLVMMFQPHRFSRTRDCFDDFVDVL 395

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR----------TAIEMLN 457
              D  ++ +  P  E P  I       +   I    ++E I              ++L 
Sbjct: 396 SQVDQLLLLEVYPAGEKP--IVGADSRALARSIRLRGQVEPILVDPVEGNLPNVLQKVLQ 453

Query: 458 KQDVLVVAGKGH 469
             D+L+  G G+
Sbjct: 454 ANDLLLTQGAGN 465


>gi|226313426|ref|YP_002773320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
 gi|226096374|dbj|BAH44816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
          Length = 454

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 132/410 (32%), Gaps = 56/410 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              I +G   +V +     +           I VV       S  A          I+ +
Sbjct: 63  DDLIHEGVSLVVKNPGIPYEAAPVKQAQALGIPVVTEVELA-SQIAK-------APIIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++  + V  I + +GL +   G   T+                    L  L+ +
Sbjct: 115 TGSNGKTTTTTLVGLIFKEAGLDAKVGGNIGTV--------------------LCGLAEE 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A             +   G   NL   H+DYH T + Y  AK+++F      
Sbjct: 155 AGPDEWLVAELSSFQLMGTRKFRPHIGVLLNLYPAHLDYHHTMEEYLAAKLKMFANQTAD 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-- 298
           ++  + Y       E++++  +    +       +      V     K  + +  +G   
Sbjct: 215 DAAILPYD----QPEIVEKCKDLPASIYYFSKSQEVPKGAFV-----KDGLILFADGNGN 265

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +            + NAL A  +    G D   +++ L     V  R EFV +      
Sbjct: 266 TEPIVAIADITVPHLDNALAAILVAKLAGADKQSIIQVLTTFPGVEHRMEFVDSIRGVKY 325

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVT 416
                A    +    L+  +        VV+ CGG DR    R ++  I   +  +  + 
Sbjct: 326 FNDSKATNPEAASRALQACKE------PVVWICGGLDRGVDFRELLPVIQGRVKAVIALG 379

Query: 417 DDNPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P       I  E     GI   I      +A+  A ++    DV+++
Sbjct: 380 QTAP-------ILLERAQEAGINERIHVDTVEKAVLAASQLAESGDVVLL 422


>gi|294787084|ref|ZP_06752338.1| UDP-N-acetylmuramate--alanine ligase [Parascardovia denticolens
           F0305]
 gi|315226736|ref|ZP_07868524.1| UDP-N-acetylmuramate--L-alanine ligase [Parascardovia denticolens
           DSM 10105]
 gi|294485917|gb|EFG33551.1| UDP-N-acetylmuramate--alanine ligase [Parascardovia denticolens
           F0305]
 gi|315120868|gb|EFT84000.1| UDP-N-acetylmuramate--L-alanine ligase [Parascardovia denticolens
           DSM 10105]
          Length = 528

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 148/456 (32%), Gaps = 70/456 (15%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           A GA   +   A ++       +S+ I+ + P +V  + +  L +  S L      +  A
Sbjct: 74  ALGATIYLGQKAQNVAQADTVVWSSAIKPDNPEIVAAHAQGALLMHRSDLLALLMAHSRA 133

Query: 120 VT--GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           VT  G  GK++ ++   QI   +G            S    D        I  ++  +  
Sbjct: 134 VTVAGAHGKTTTSAMAAQILVSAG------------SGQLADPSFAIGGSIRTSEGTADG 181

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V V  +         +  +      TN+  DH+D++ + QA+  A     E  
Sbjct: 182 GHAGKGAVLVAEAD--ESDGSFEKYRPFIAIITNVEPDHLDHYGSAQAFHQA---FLEHA 236

Query: 238 LPKESPAIIYADDAYSKEVMKRA---HNAGCRVLSV-------GYQGKFIHLKKVCAIHN 287
                  ++  DD  + +++K       A   V S        G    F+++       +
Sbjct: 237 GHASGHVVLCGDDPGALDLLKALSPEQAATAVVYSTQPDLPLGGSPASFVYIGGEKEAAS 296

Query: 288 KQQV-------------------TISVEGKD-----FDFLFPLPGEFQVYNALVAAGLCI 323
            Q+V                   ++S E +D     F     +PG     NA  A    +
Sbjct: 297 DQEVDPQVAESFSLVLPPGLMAQSLSAEVRDSSSGKFRVNLRVPGIHNARNAAAAIIAAV 356

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSG 382
            +G+      +     +    RFE  G    G  +  DYAH    +  +L+   R     
Sbjct: 357 LLGVSPQKACQAAFDFYGAKRRFEKRG-EVNGVTVVDDYAHHPTEISALLQAAHRRYPQA 415

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--------PEKIRAEIIH 434
              VVF                 AL LAD  IVT   P  E         P+ + + I  
Sbjct: 416 ATRVVFQPHLYSRTHFFAREFAQALSLADDVIVTGIFPAREKQEDWPQVGPDIVVSLIDQ 475

Query: 435 --GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             G        +  EA R         D+++  G G
Sbjct: 476 EGGRVKARSVEDMDEAGRLIAADAQPGDLILTVGAG 511


>gi|325690202|gb|EGD32206.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK115]
          Length = 459

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 139/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN     ++    L  K P     
Sbjct: 58  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIPYDN-----AMVVRALEKKIPVITEV 112

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + Q     G +    G    I   A     T  S
Sbjct: 113 ELAYLISEAPIIGITGSNGKTTTTTMIAQALTAGGQNGLLSG---NIGYPASQVAQTASS 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   LS     G                 ++         TNL   H+DYH + + Y
Sbjct: 170 KDTLVMELSSFQLMG-----------------IEDFHPQIAVITNLMPTHLDYHGSVEGY 212

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + + +   +   + +  D ++KE+  +         +          K   A  
Sbjct: 213 AAAKWNIQKNMTADDYLVLNFNQD-WAKEMASQTQATVVPFSTTE--------KVDGAYL 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GID+  + E L     V  R 
Sbjct: 264 EGDVLTFRGEAIMQAAEIGVPGSHNVENALAMIAVAKLRGIDNQTIKEVLSAFGGVKHRL 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +     + + + ++N L    K +        +++   G DR      ++  + 
Sbjct: 324 QYVGRVNE--VAFYNDSKSTNIL-ATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLK 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+     R +     RA  + G+  +++  +  +A   A       D++++
Sbjct: 380 G-LKKMVILGQSAARVK-----RAADLAGV-SYLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|239787357|emb|CAX83834.1| UDP-N-acetylmuramate--alanine ligase [uncultured bacterium]
          Length = 450

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 147/420 (35%), Gaps = 44/420 (10%)

Query: 65  AQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116
             GA   +      V+S       S+ I  +   L       F  L   ++ G+      
Sbjct: 43  ELGATITIGHNVSAVNSDCDYIVISSAILDDNVELQKAKMLGFPILKRHQMLGEIIRGYK 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV+G+ GK++  + +  +   +      I     +++F  +  L   S   +      
Sbjct: 103 TIAVSGSHGKTTTTAMMGALLTEAQYDPLIING-GIVNAFGSNVSLGLGSWCVV------ 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                         S G   +    ++ I    TN+  +H+++ +TQ++   A  + F E
Sbjct: 156 ----------EGDESDGSFLN----MQPIISVITNIDLEHMEFFKTQESLEKA-FQTFIE 200

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                   +   DD  +  V+K+       +++ G  +   I L  +         ++  
Sbjct: 201 NTSILGCTLACIDDPLAAVVIKK--TPHHTIITYGESENSDIRLTALDKGITGSYFSVKT 258

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             K++ +   P+ G+  V N+L   G    + +D   + E L+    V  RF   GT   
Sbjct: 259 RRKEYKNLFLPMMGKHNVLNSLAIVGAGEFLDLDEDTIRETLKNFQGVQRRFTIRGT-VN 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                 DYAH    +E ++K+ +   + +I+ +                   LD+AD  I
Sbjct: 318 SAVFVDDYAHHPREIETVIKSAKQYGATKIVAIVEPHRYSRVKDLLHEYAPVLDIADDII 377

Query: 415 VTDDNPRSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +       E+P        I  ++           + IE I+T    L+   + +  G G
Sbjct: 378 LIPLYGAFEEPIEGVSSFAIAQQLSKPYCLVETFEDLIEQIKT---RLDPGTIFLFMGAG 434


>gi|33603175|ref|NP_890735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           bronchiseptica RB50]
 gi|62900580|sp|Q7WFS0|MURD_BORBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33568806|emb|CAE34564.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
           RB50]
          Length = 510

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 140/421 (33%), Gaps = 61/421 (14%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V      ++     R     +V +      +L       ++   +LA+TGT+GK++V +
Sbjct: 88  LVPHESPTRELLEQARERNVEVVGEIELFARALAGLAESREYRPRVLAITGTNGKTTVTA 147

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             +Q+ +  G+S+   G  S  +  A  + L       +                +E SS
Sbjct: 148 LTRQLIEAGGMSARAAGNISPAALAALIDALDQDDLPQVW--------------VLELSS 193

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+  R   +   A    N+ +DH+D+H   QAY  AK R+    L     AI+  DD 
Sbjct: 194 FQLETTRT--LAPDAAVVLNVTQDHLDWHGDMQAYAQAKARI----LKPARLAIVNRDDP 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE-- 309
            +  +++       R  S G     +       +        + E  DFD   P P    
Sbjct: 248 LTVAMVESLQALNVR--SFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKK 305

Query: 310 --------------------------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                                         NAL A  L  ++ +    +L  L      P
Sbjct: 306 DAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWGPMLRTLRDYAGEP 365

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V +      I         +    L+ +     G+ +V+   G  + Q   P++ 
Sbjct: 366 HRAELVRSIGDVDYINDSKGTNVGATVAALEGL-----GQQVVLIAGGQGKGQDFSPLVP 420

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +      + ++  D         I   +       +   +  EA+R A E+    D ++
Sbjct: 421 VVRRHARAVVLIGVDG------AAIGKVLEPTGVPCVAAADMREAVRRAAELAQPGDAVL 474

Query: 464 V 464
           +
Sbjct: 475 L 475


>gi|59712807|ref|YP_205583.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio fischeri ES114]
 gi|75353396|sp|Q5E2Q1|MURC_VIBF1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59480908|gb|AAW86695.1| UDP-N-acetylmuramate:L-alanine ligase [Vibrio fischeri ES114]
          Length = 487

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 148/429 (34%), Gaps = 50/429 (11%)

Query: 64  IAQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GAE      A      S+   S  I  + P +V     +        + A  +  +H
Sbjct: 64  AQKGAEIFFGHQASNVAKASVVVVSTAIDPSNPEIVAAKENRIPVIRRAEMLAELMRYRH 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  +   QI   +GL    +     + +   + R    S  +L   
Sbjct: 124 G---IAVAGTHGKTTTTALTTQIYSEAGLDPTFVNG-GLVKNAGTNAR--LGSSRFL--- 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 175 IAEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFETLKQTFID 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
           F   LP    A++  DD   +E++ +      +V++ G+     + L     +  +   T
Sbjct: 220 FLHNLPFYGQAVMCVDDPVVRELLPQVSR---QVITYGFSDDADVRLINYRQVGQQSFFT 276

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  + + D D +  +PG+    NA  A  +     ++   +L  L        RF+ +G 
Sbjct: 277 VQRKDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILTALLNFEGAGRRFDQLGE 336

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 337 FETGNGSAMLVDDYGHHPTEVDVTIKAARAGWAEKRLVMIFQPHRYSRTRDLYDDFANVL 396

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQD 460
           D  D+ I+ D     E P        +   I             IEA+   +  ++ + D
Sbjct: 397 DNVDVLIMLDVYSAGETPIAGADGRALCRTIRGRGKIDPVFVPTIEALPPVLANIIQEGD 456

Query: 461 VLVVAGKGH 469
           +++  G G 
Sbjct: 457 LILTQGAGD 465


>gi|319939629|ref|ZP_08013988.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
 gi|319811218|gb|EFW07524.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
          Length = 450

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 138/416 (33%), Gaps = 54/416 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + +       L D    +    P +  DN   +K L            A  
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIRYDNPMVKKALEKEIPVITEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++    G S    G     +S             
Sbjct: 109 ISD---APIIGITGSNGKTTTTTMIAEVLTAGGQSGLLSGNIGFPASQVATTATKN---- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                           + +E SS  L    ++         TNL   HIDYH + + Y  
Sbjct: 162 --------------DTLVMELSSFQLM--GIETFHPEIAVITNLMPTHIDYHGSFENYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + ++ + K    ++  +   +KE+  +         +          K   A    
Sbjct: 206 AKWNI-QKNMSKSDFLVLNFNQTLAKELAAKTQATVVPFSTTE--------KVDGAYLEG 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +T   E         +PG   V NAL    +    GI++ ++ E L     V  R ++
Sbjct: 257 NMLTFRGEPVMAADELGVPGSHNVENALATIAVAKLRGIENQVIKETLAGFGGVKHRLQY 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VG  +   + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VGEINH-VKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-QG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L  + I+       E   +++         +++  +  +A + A       D++++
Sbjct: 372 LKKMVIL------GESAARVKRAADKAGVSYMDAADVKDATQKAFAEAQAGDIVLL 421


>gi|150003965|ref|YP_001298709.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|149932389|gb|ABR39087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
          Length = 444

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 122/362 (33%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I +++G++    G               
Sbjct: 95  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG------------ 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++     +  +E SS  LD   +           N+  DH+D +   
Sbjct: 140 -------QSLAYQVAECNYDYYVIELSSFQLDN--MYKFHANIAVLMNITPDHLDRYDHQ 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P ++      D    +E+ K   +      +   +       + 
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAYVEQ 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++  + +  ++E ++      L G   ++N++ A       GI    + E L     V
Sbjct: 251 DKVYFTEPIAFNMEQEE----LALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGV 306

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A   NS    L++++T       ++   G D+      I 
Sbjct: 307 EHRLEKVCRVRGVDYINDSKATNVNSCWYALQSMKT-----KTILILGGKDKGNDYNEIA 361

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      +  +   N      EK+            +  +  +A+  A  M  K + +
Sbjct: 362 DLVKEKCTGLIYMGLHN------EKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|196045927|ref|ZP_03113156.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
 gi|196023367|gb|EDX62045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
          Length = 450

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD     +   +      + S   + +     K  A++ K +  + V+         LP
Sbjct: 224 ADDVDVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT     S   + 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTAS---KL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLETIESVDTLEEAVVKAYAHSTDGDVILL 422


>gi|93006855|ref|YP_581292.1| UDP-N-acetylmuramate--alanine ligase [Psychrobacter cryohalolentis
           K5]
 gi|109892726|sp|Q1Q945|MURC_PSYCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|92394533|gb|ABE75808.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter
           cryohalolentis K5]
          Length = 479

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 147/434 (33%), Gaps = 53/434 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + IA  A+ IVVSSA    +          + VV      L       +G    
Sbjct: 72  GHD--SKNIAN-ADVIVVSSAIDRSNPEVKAALEARLPVVRRA-DMLGELMRYRHG---- 123

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ G  GK++  S +  +          + PT  I     +      +       ++
Sbjct: 124 --IAIAGAHGKTTTTSLLTTMMAE-----GNLDPTYVIGG-KLNASGKNAALGSSRFLIA 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                +  +A   TN+ +DH++ +        A    F 
Sbjct: 176 EADESDASFL---------------SLHPMAAIVTNIDQDHMETYGNSFDKLKAAYIQFL 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P    A++  DD    E+     + G  VL+ G +  F  ++ V  +    +   +V
Sbjct: 221 QNMPFYGLAVVCGDDP---ELYAMIDDIGRPVLTFGLEP-FNDVQAVDLVTEGTKTHFTV 276

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
              + +       +PG   VYNAL A  +    G+D A +   L+K   V  RFE    V
Sbjct: 277 LRRDHEPLRLTLNIPGVHNVYNALAAITMATDEGVDDAAITRALQKFEGVGRRFEQHASV 336

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +     +  DY H    ++  +K  R +    R++++F                  L 
Sbjct: 337 EIDDGNVLLIDDYGHHPKEVDATIKAARQSFPERRLVMMFQPHRYSRTRDCFDDFVEVLS 396

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             D  ++ D     E P      + +   I     +   I   + I  +     +L   D
Sbjct: 397 SVDELLLLDVYSAGESPIAGADTKALARSIRLRGAVEPTIVDKDNIAPVMQ--RLLKAGD 454

Query: 461 VLVVAGKGHETVHI 474
           +L+  G G+    I
Sbjct: 455 MLITQGAGN-VGQI 467


>gi|254880788|ref|ZP_05253498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|319639798|ref|ZP_07994528.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
 gi|254833581|gb|EET13890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|317388615|gb|EFV69464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
          Length = 444

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 122/362 (33%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I +++G++    G               
Sbjct: 95  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG------------ 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++     +  +E SS  LD   +           N+  DH+D +   
Sbjct: 140 -------QSLAYQVAECNYDYYVIELSSFQLDN--MYKFHANIAVLMNITPDHLDRYDHQ 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +   P ++      D    +E+ K   +      +   +       + 
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAYVEQ 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++  + +  ++E ++      L G   ++N++ A       GI    + E L     V
Sbjct: 251 DKVYFTEPIAFNMEQEE----LALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGV 306

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A   NS    L++++T       ++   G D+      I 
Sbjct: 307 EHRLEKVCRVRGVDYINDSKATNVNSCWYALQSMKT-----KTILILGGKDKGNDYNEIA 361

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +      +  +   N      EK+            +  +  +A+  A  M  K + +
Sbjct: 362 DLVKEKCTGLIYMGLHN------EKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|258516086|ref|YP_003192308.1| Mur ligase middle domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779791|gb|ACV63685.1| Mur ligase middle domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 455

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 154/434 (35%), Gaps = 40/434 (9%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            ++   ++  +  +  D + F      +    ++ S  Y++++   T      ++ V++ 
Sbjct: 35  KLKDNSLYFNMQDDPVDFNSF------KNCAMVINSEHYNVENSKWT------VVAVEDV 82

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            K    F           ++AVTGT GK++    ++ I               T +++  
Sbjct: 83  EKAFWRFVKYYRNLFNIPVVAVTGTCGKTTTKEMIKHILSL---------HFKTAATYKS 133

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
            N      P  L   +   +   V   +V      ++  R    K   G  TN+G DH+ 
Sbjct: 134 INGWRMHLPYLL--EIDETTEAAVFETAVAYPEDLIESCR--YFKPDIGIITNIGVDHLS 189

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI- 277
              T   Y NAK  + E L  +    I+ ADD     +         R++  G   K   
Sbjct: 190 GCSTFDNYLNAKAEMMEGLGYR-GTLILNADDKNISRI--DLQPYKGRIIYFGLSKKSHF 246

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              ++       Q ++  +   +D   P  G   +YNAL A      +G+        L 
Sbjct: 247 RASEISLTDKGMQFSLEYKKLRYDIFVPGFGTHSIYNALAAIACTHVLGLGIKEAALRLA 306

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD-- 393
               +    + V     G  I  D ++    S++  LK ++ ++   R   + G      
Sbjct: 307 SYKHLERHLQVVP-GVNGSTIIDDTWSSNPTSMQAALKTLQNLSGNKRKAAILGDMFYLY 365

Query: 394 -RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIR 450
             ++     +G +A+++    ++T  +  SE     R  +  G+         +  EA +
Sbjct: 366 SWEKELHREIGNLAVEIGLDILLTVGDAASEIA---RGALEKGMNSENIFICADADEAYQ 422

Query: 451 TAIEMLNKQDVLVV 464
               +L+   +++V
Sbjct: 423 VICPLLDDNTIVLV 436


>gi|219666155|ref|YP_002456590.1| cyanophycin synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536415|gb|ACL18154.1| cyanophycin synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 885

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 116/344 (33%), Gaps = 30/344 (8%)

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +G T+T   +     L          A   L    V    +E +  G+ +  L       
Sbjct: 509 VGMTTTDGIYVGGKLLLKGDTTGPESAQIVLRHPDVQVAVLETARGGILRAGLAYDYADV 568

Query: 207 GSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              TN+  DH+  +   + +   + K  L  E++   S  ++ ADD     V   A    
Sbjct: 569 AVVTNVANDHLGQYGMESLEDIAHVKS-LIAEVVRPHSYVVLNADDPL---VASFARKTK 624

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT-----ISVEG---------KDFDFLFPLPGEF 310
            +V+    +   + ++K  A+            +  +G         KD    +      
Sbjct: 625 GKVIFFSTEKDNLTIRKHLAVGGIAVFVRRGNILLCQGDQSHKICGVKDLPVTWNGKALH 684

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + NAL A  +  ++G+ +  +   L +        R         G ++++DY H +  
Sbjct: 685 NLQNALAAIAVGWSLGLKAEGIRTSLSEFTSDPECNRGRLNPYTIGGVQVFIDYGHNAAG 744

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEK 427
           ++ I + +R   +  ++      GDR       + ++A       I+ +D + R   P +
Sbjct: 745 IKAIAQTLRKFKAPAVVGCVTVPGDRPDETIREVARVAARGFHRLIIREDGDLRGRRPGE 804

Query: 428 IRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVV 464
           I   I+           R        EA    ++     ++ V+
Sbjct: 805 IAGMIMEEAIASGMDPRRISVVLPEREAFCHGLDTCKPGEIFVM 848


>gi|293401981|ref|ZP_06646121.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304639|gb|EFE45888.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 523

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 117/320 (36%), Gaps = 23/320 (7%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           ++   A +L       I+ +TG+ GK+SV + + Q+ +      + +    + ++     
Sbjct: 165 YMQKAAKKLRDHENLCIIGITGSYGKTSVKNVLYQLMKE---DWYALATPQSYNNRMGIT 221

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           +        L +    L   G  HV          +  +  ++   G  T +G+ H+   
Sbjct: 222 KTILEYLQPLHELF--LCEMGADHV-------HEIEELMKFVRPQYGIVTAVGQQHLATF 272

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHL 279
            + +   + KM++ E+L  +E    + AD+ + +    R H   CRV+  G         
Sbjct: 273 HSMENILHEKMQMIEQL-GREGIGFLNADNEWIRSYPLRVH---CRVIWFGKDMLADYRY 328

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
             V       + TI+ +     F   L GE  + N      +   +G+    + +  E+L
Sbjct: 329 GNVSYDEEGSRFTITHKAVAHVFHTRLLGEHNLMNITCGVAVAHQLGMSWDALGKQCEQL 388

Query: 340 HVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRD 395
             V  R E          +  D Y          L  +R +   RII+   +   G  +D
Sbjct: 389 PYVTHRLEKKQMAD--YTLLDDAYNANPKGARYALDVLREMPQQRIIITPGLIDLGYAQD 446

Query: 396 QGKRPIMGKIALDLADIAIV 415
           +    +   +A  + D+ +V
Sbjct: 447 KENELLGAYMAACVDDVILV 466


>gi|94985731|ref|YP_605095.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus geothermalis DSM
           11300]
 gi|189029012|sp|Q1IXV8|MURC_DEIGD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94556012|gb|ABF45926.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus geothermalis DSM
           11300]
          Length = 465

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 131/417 (31%), Gaps = 53/417 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + ++ S A               + V    R  ++L    L        + V GT GK
Sbjct: 77  GVDVLIASEAVPKNHPELVAARGAGVEV----RPRMALLDELLRAGPS---VGVIGTHGK 129

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +    Q +GL          +  F  + RL T                G     
Sbjct: 130 TTTTSMIAVAMQGAGLDPAAF-VGGIVPEFGSNVRLGT----------------GPFVAE 172

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-----YHQTQQAYFNAKMRLFEELLPKE 241
           V+ S  G        +      FTN   DH+      Y +T +    A    F   + + 
Sbjct: 173 VDESDRG-----FAVLSCETAVFTNAEDDHVGGNQATYWETVEQQHAA----FARFVGQA 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              +  AD     +++  +       L+ G  +G       +         T++  G+  
Sbjct: 224 RRVLYCADWPGLDQLVTTSGER----LNYGLAEGADYRAVDLRPDAEGTTFTVARRGEVL 279

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    LPG   V NAL A  +    G +       L        R++ +G    G  I 
Sbjct: 280 GEARVGLPGLHNVLNALAALAVTDLYGGNFQTAAAALAAFRGPGRRWQRIG-ELNGALII 338

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAH +             T  R+ VVF         +       AL  AD  +V D  
Sbjct: 339 DDYAHNATK-VAAAVQAARQTGRRVRVVFQPHRYLRTQQSWPRLADALMGADEVLVLDIA 397

Query: 420 PRSEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             SE P   I A ++       G  G     +R E +R   E     DV+V  G G 
Sbjct: 398 TASEPPIPGIHATLVSDRMAQSGHTGVRYAPDRAEVVRYLRETACADDVIVTMGAGD 454


>gi|306844332|ref|ZP_07476924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
 gi|306275404|gb|EFM57145.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
          Length = 467

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
              V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AVFVLSPGVPLTHPQ-------PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + +G      G   T                     L+     
Sbjct: 120 TGTNGKSTTTALIAHIIKATGRDMQLGGNIGT-------------------AILTLEPPC 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ADRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              AII  DDAY + +  R H AG RV+ +  +      +      +   Q   I  E  
Sbjct: 215 SGTAIIGVDDAYCQAIADRLHGAGIRVMRISKEKHLDRGYFADGAKLLWSQDGEID-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C++ G+    +   L+    +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +V+ +  +N+ E     + +       +V
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWIV 359


>gi|291544049|emb|CBL17158.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. 18P13]
          Length = 471

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 133/423 (31%), Gaps = 52/423 (12%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA+ IV ++A      +  A   S  P+L      + L +  S+      +N + + GT
Sbjct: 67  AGADLIVHTAAIMADNPELIAAKASGVPVL---ERSELLGIVTSKY-----DNAICICGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S   QI   +G+          +S+F               K+   +  +   
Sbjct: 119 HGKTTTTSMAAQILFTAGVD---------LSAFIGGKLPCIGGSGRAGKS-DIMVCESCE 168

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V                +        N+  DH+DY  T +    +  +  E        
Sbjct: 169 FVD-----------TFLKLYPDVAVILNVDADHLDYFGTLENVIKSFHKFAE---KASRT 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
            I   +D+ +++ ++                 +   +       +         K   + 
Sbjct: 215 VIYNGNDSNTRKAVEGISGKEMITFGNTPDCDYYAAQVQHVSGMETHFIAMHHDKPMGEI 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           +  + G   V NA+ A       G+    + + L +      RFE V     G  +  DY
Sbjct: 275 VLHVAGIHNVLNAMAAIAAADHAGVPFDAIQKGLCEFRGAGRRFEKVAQVG-GITVVDDY 333

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPR 421
           AH    L + L   + +    +  VF                 AL +AD A++TD    R
Sbjct: 334 AHHPAELTVTLNAAKEMGYRHVWAVFQPFTFSRTAMLLDDFAKALSIADTAVLTDIMGSR 393

Query: 422 SEDPEKI----RAEIIHGI----------PGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG 466
            ++   I     AE I G           P    K +  + +     +     D+++  G
Sbjct: 394 EKNTYHIFTRNLAEKIPGCVWFPQDETEEPNDTRKYHNFDQVCDYICKHAQPGDLVITLG 453

Query: 467 KGH 469
            G 
Sbjct: 454 CGD 456


>gi|227488530|ref|ZP_03918846.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091424|gb|EEI26736.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 491

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 135/449 (30%), Gaps = 81/449 (18%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSS 128
                +    A I  + P LV              L A  +  +     + + GT GK+S
Sbjct: 58  ERPNVVVTSFAAIPKDNPELVAARELGIPVIRRSDLLAELMKDRI---QVLLAGTHGKTS 114

Query: 129 VASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
             S      Q++G   SF IG     +     +           ++ + L S        
Sbjct: 115 TTSMAVVAMQQAGLDPSFAIGGQLNKAGTNAHDGTGRAFVAEADESDASLLSY------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  DH+D+ +T + YF         +       +  
Sbjct: 168 ---------------APDVAVVTNIEPDHLDFFKTPEKYFEVFDSFAAVVAENGGELVAC 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-----------SVE 296
            +D ++  + + A      V   G+    +    +  +    +VT+            V 
Sbjct: 213 VEDEHALALARTAPGT---VYGYGFAATLVENPTITPLVAVDEVTLTAYGSVATMHVHVP 269

Query: 297 GKD---FDFLFPLPGEFQVYNALVAAGLCIAI---------GIDSALVLEHLEKLHVVPG 344
           G D    +     PG   V NA  A G                    +   +     V  
Sbjct: 270 GGDVVPVEVTVRTPGTHMVLNAAAALGATFLASNRENGTFDATTLNQLAAGISDFTGVRR 329

Query: 345 RFEFVGTNSR----GGRIYVDYAHTSNSLEMILKNIRTITSG-------------RIIVV 387
           RFE  GT  R    G ++Y DYAH    +  +L+  +    G              +IV 
Sbjct: 330 RFELKGTVERGPLAGVKVYDDYAHHPTEVAAVLRACKAKAVGEARAAGKPDDERPHVIVC 389

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEK 442
           F         K       AL LAD AIV D     E+P       + AE I     ++  
Sbjct: 390 FQPHLYSRTLKFAEEFGAALSLADHAIVLDIYGAREEPVEGVTGALVAEKIDSTGEYVPG 449

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            N  +A      +    D+++  G G  T
Sbjct: 450 FN--DAPAAVARVAKPGDIVLTMGAGSVT 476


>gi|330997827|ref|ZP_08321662.1| UDP-N-acetylmuramate--L-alanine ligase [Paraprevotella xylaniphila
           YIT 11841]
 gi|329569715|gb|EGG51480.1| UDP-N-acetylmuramate--L-alanine ligase [Paraprevotella xylaniphila
           YIT 11841]
          Length = 458

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 136/429 (31%), Gaps = 54/429 (12%)

Query: 60  IPQA-IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           IP A   + A  +V + A   +             +     + L        G      L
Sbjct: 63  IPSACRDKDACLVVYTPAIPCEHAELAYFKANGFEIEKRA-QVLGALTRAHKG------L 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSS--FQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            V GT GK++ +S    I  +S +    F  G T    +                   +Y
Sbjct: 116 CVAGTHGKTTTSSMAAHILHQSHVDCNAFLGGITKNYGT-------------------NY 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + S    +V +EA       H L      A   T    DH+D + T++AY  +  R +  
Sbjct: 157 ILSPKSDYVVIEADEFDRSFHWL---TPYASVITATDPDHLDIYGTKEAYLES-FRKYTS 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+      +++       +V +     G    S        H + +     +        
Sbjct: 213 LIRPGGFLVLHEGLEMQPDVQE-----GVMTYSYSRGHGDFHAENIRIGDGEIYFDFISP 267

Query: 297 -GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G   D    +P    + N + A  L    G+    + + +     V  RF+F    S  
Sbjct: 268 LGHIKDVQLGVPVSINIENGIAAMALAQISGVTPEEIKQGMASFRGVDRRFDFR-MKSDK 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH    +   + ++R +  G+ I  +F                 +L L D  I
Sbjct: 327 AVFLTDYAHHPAEIRQSVISVRELYRGKKIAAIFQPHLYTRTRDFYKEFAGSLSLLDEVI 386

Query: 415 VTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +TD  P  E P        I   +   +   +    R E +   +   +  DV ++ G G
Sbjct: 387 LTDIYPAREAPIPGVTSRLIYDRLAPTVKKCLC---RKEDVPEIVRQSDA-DVFILLGAG 442

Query: 469 H-ETV--HI 474
             E+    I
Sbjct: 443 DLESYAPQI 451


>gi|108800221|ref|YP_640418.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119869349|ref|YP_939301.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126435844|ref|YP_001071535.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
 gi|122976796|sp|Q1B6X2|MURC_MYCSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224706|sp|A3Q1L7|MURC_MYCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224707|sp|A1UI53|MURC_MYCSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108770640|gb|ABG09362.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119695438|gb|ABL92511.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126235644|gb|ABN99044.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
          Length = 484

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 100/283 (35%), Gaps = 20/283 (7%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D+  + +AY  A    F E L      I   DD  S  + +R    
Sbjct: 183 PDVAVVTNIEADHLDFFGSAEAYT-AVFDAFVERLTPGGALIACVDDPGSAALAERTAAL 241

Query: 264 GCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVA 318
           G RVL  G  G       L             I + G+         +PG     NAL A
Sbjct: 242 GVRVLRYGSAGGRDLAGALVGWEQQGTGAVAHIQLAGESAPRAMRLSVPGRHMALNALGA 301

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + +G D   VL+ L     V  RFE VGT + G R++ DYAH    +   L  +R 
Sbjct: 302 LLAALQVGADPDTVLDGLAGFEGVRRRFELVGTAT-GVRVFDDYAHHPTEVAATLAALRA 360

Query: 379 IT----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKI 428
           +T     GR +VVF                 AL  AD+  V D     E P        I
Sbjct: 361 VTDQAGDGRAVVVFQPHLYSRTETFAREFGAALSAADLVFVLDVYGAREQPIAGVSGASI 420

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
              +  G+P      +           +   DV+V  G G  T
Sbjct: 421 VEHV--GVP-VTYVPDFSAVAAQVAGAVRPGDVVVTMGAGDVT 460


>gi|254719464|ref|ZP_05181275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           83/13]
 gi|265984470|ref|ZP_06097205.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306839243|ref|ZP_07472060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
 gi|264663062|gb|EEZ33323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306405790|gb|EFM62052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
          Length = 467

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
              V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AVFVLSPGVPLTHPQ-------PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + +G      G   T                     L+     
Sbjct: 120 TGTNGKSTTTALIAHIIKATGRDMQLGGNIGT-------------------AILTLEPPC 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ADRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              AII  DDAY + +  R H AG RV+ +  +      +      +   Q   I  E  
Sbjct: 215 SGTAIIGVDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWSQDGEID-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C++ G+    +   L+    +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +V+ +  +N+ E     + +       +V
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWIV 359


>gi|313203975|ref|YP_004042632.1| udp-N-acetylmuramoylalanine--d-glutamate ligase [Paludibacter
           propionicigenes WB4]
 gi|312443291|gb|ADQ79647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paludibacter
           propionicigenes WB4]
          Length = 444

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 121/351 (34%), Gaps = 36/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++    V  I + +GL     G                          
Sbjct: 102 AKMICITGSNGKTTTTMLVYHILKNAGLKVGLAGNVG-------------------QSLA 142

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             +++    +  VE SS  LD   +   K       N+  DH+D ++   Q Y ++K R+
Sbjct: 143 LQVATDTFDYYVVELSSFQLD--GMTEFKADIAILLNITPDHLDRYEYNFQNYVDSKFRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +    ++S      D     E+ KR   +     S+    +     +   +  K   T+
Sbjct: 201 TQNQTEEDSFIFWENDPVIKAELAKRKIQSTMYPFSIERSERTKAFIEQDELIIK---TL 257

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G    YN++ A      + +    + + L+    V  R E+V T  
Sbjct: 258 KTLFTMPTTDLALQGMHNTYNSMAAGLAASIVNVRKESIRQSLQDFQGVEHRLEYVATVK 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A   NS    L++++T      +V+   G D+      I   +  ++  + 
Sbjct: 318 NIRFVNDSKATNVNSCWYALQSMKT-----PVVLILGGTDKGNDYSEIEELVKANVKALI 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN        +       I   ++  +  +A++ A  +    D +++
Sbjct: 373 FMGLDN------SPLHKFFDGKIERIVDVQSMEDAVKEAYGLAESGDTVLL 417


>gi|54023735|ref|YP_117977.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardia farcinica IFM
           10152]
 gi|59798147|sp|Q5YYX8|MURC_NOCFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54015243|dbj|BAD56613.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Nocardia farcinica
           IFM 10152]
          Length = 501

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 150/459 (32%), Gaps = 73/459 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFS----------ATIRSNTPILVVDNTRKFL-----SLFASRL 109
           A+GA+  +   A +L              A I    P LV    R        ++ AS +
Sbjct: 61  ARGAQVRIGHDAGALDLLPGGPTAVVTTYAAIPKTNPELVEAQRRDIPVLLRPAVLASLM 120

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPI 168
            G      L V+GT GK+S  S +    Q  G    F +G     +     +        
Sbjct: 121 RGH---RTLLVSGTHGKTSTTSMLIVALQHCGFDPSFAVGGELNEAGTNAHHGTG----- 172

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                        +     + S   L Q+            TN+  DH+D+  +  AY  
Sbjct: 173 ------------EIFVAEADESDGSLLQY-----DPDVAVVTNIESDHLDFFGSDAAYTQ 215

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRA----HNAGCRVLSVGYQ---------GK 275
                F + L      ++  DD  S+ + +R        G RVL  G           G 
Sbjct: 216 V-FDDFADRLAAGGLLVVCLDDPGSRALAERVGPRLAERGVRVLGYGSGELADAPVPVGV 274

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            +H  +   +    Q  +  E         +PG     NAL A     A G D   +++ 
Sbjct: 275 RLHSWEPRDVGGVAQFQLGDEPAPRTLRLSVPGRHMALNALAALLAARAAGADLDEIIQG 334

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL-----------EMILKNIRTITSGRI 384
           LE    V  RF+FVG    G R++ DYAH    +           E   ++      GR+
Sbjct: 335 LEGFGGVHRRFQFVG-RENGVRVFDDYAHHPTEVRAVLGAAAALVEQEARDGARSRQGRV 393

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIE- 441
           IVVF                 AL LAD  +V D     E   P    A +   +   +  
Sbjct: 394 IVVFQPHLYSRTATFATEFGAALSLADEVVVLDVYGAREKAMPGVNGALVAQAVTAPVHY 453

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETV---HIVTN 477
           + +     R    +    DV++  G G  T+    I+  
Sbjct: 454 QPDMSRVGRQVAGLALPGDVVITMGAGDVTMLGSQILDG 492


>gi|239945137|ref|ZP_04697074.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|239991598|ref|ZP_04712262.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 11379]
 gi|291448599|ref|ZP_06587989.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
 gi|291351546|gb|EFE78450.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
          Length = 466

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 143/439 (32%), Gaps = 58/439 (13%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A+ A  +VVSSA    +      +   I VV  +    SL     
Sbjct: 54  GATVHIGH--AAPHLAEDASCVVVSSAIRADNPELLRANELAIPVVHRSDALASLM---- 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRS--------GLSSFQIGPTSTISSFAQDNR 161
              +    +AV GT GK++  S +               G      G  +T         
Sbjct: 108 ---NGLRAIAVAGTHGKTTTTSMLAVALSSLSLAPSYAIGGDLEGPGTNATHGEGDIFVA 164

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
               S     K                                      N+  DH   + 
Sbjct: 165 EADESDRSFQKY-----------------------------DPEVAIVLNVELDHHANYA 195

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVG-YQGKFIHL 279
           +    +++    F   +      +I AD   + E+ +R  + A  +V++ G  +   + +
Sbjct: 196 SMDEIYDS-FETFVGKVVPGGTLVISADQPGAVELTRRVRDLADLKVVTYGSAEDADVRV 254

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            KV       +VT+ + GK   F   +PG    +NA+ A    +A+GI +  +   L   
Sbjct: 255 HKVTPRGLTSEVTVLLNGKFLTFTVSVPGAHYAHNAVAALAAGVALGIPAHNLASALGSY 314

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGK 398
             V  R +  G  + G ++   YAH    +   L+ +R      RI+VVF         +
Sbjct: 315 TGVKRRLQLKGEAA-GVQVIDSYAHHPTEMTADLEAMRGAAADARILVVFQPHLFSRTQE 373

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                  AL LAD ++V D  P  EDP        I               ++ +     
Sbjct: 374 LGTEMGQALALADASVVLDIYPAREDPIPGITSALIIDAAKTAGAEVTAVHDQADVPAAI 433

Query: 453 IEMLNKQDVLVVAGKGHET 471
             M    D+++  G G  T
Sbjct: 434 AGMAKPGDLVLTMGAGDVT 452


>gi|332706478|ref|ZP_08426539.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya majuscula 3L]
 gi|332354362|gb|EGJ33841.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya majuscula 3L]
          Length = 515

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 129/419 (30%), Gaps = 53/419 (12%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +    ++ A ++   PI    +    L               +AV GT GK++
Sbjct: 116 VICSTAINPLNSEYQAALKLGCPIFHRSDLLAALIE---------DYYSIAVAGTHGKTT 166

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++G     I      +          P                     + 
Sbjct: 167 TSSLIGYLLWQAGCDPTMIIGGEVDAIGGNARLGNGP---------------------LL 205

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L  +    G  TN+  DH D++Q  +        +F+    +    +   
Sbjct: 206 VAEADESDGSLVKLSAEIGVVTNIELDHPDHYQKLEEVV----EIFQTFAKRCKNLVGCI 261

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPL 306
           D    +  +K   +   R       G    +  V    N     +  EG          L
Sbjct: 262 DCETVRSQLKPNISYSLRR----DMGADYSVDDVTYEANGTTARV-WEGNQVLGRLELKL 316

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  + NAL A  +   +G++   +   +        RFE  G          DYAH  
Sbjct: 317 LGKHNLSNALAAVAVARNLGLEFEAIASGIASFEGAKRRFELRG-KCNDISFVDDYAHHP 375

Query: 367 NSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
           + ++  L   R       RII +F         +      ++   AD+ +++D     E 
Sbjct: 376 SEIQATLAAARIQVNADQRIIAIFQPHRYSRTLRFLPEFSVSFSNADLVVISDIYSAGEP 435

Query: 424 DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           D  +I  E     I         +      +    ++L   D+ +  G G+    I+  
Sbjct: 436 DLGEISGENLYQAIASNHKDVHYQPTLESVVEFLNQILYPGDLALFLGAGN-LNQIIPK 493


>gi|326771694|ref|ZP_08230979.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505]
 gi|326637827|gb|EGE38728.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505]
          Length = 524

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 157/440 (35%), Gaps = 71/440 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS+A    +            V+  + + L+L A  L      + +AV G  GK++ +
Sbjct: 89  VVVSTAIKETNPELAEARRRGQDVIHRS-QALALAARGL------DFVAVAGAHGKTTTS 141

Query: 131 SFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + +    +G   S    G    + + A            L    + ++    +  S  
Sbjct: 142 GMLAEALTEAGADPSFAIGGVVRALGTGAH-----------LGSGPALVAEADESDRSFL 190

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             +                  TN+  DH+D + T +A+  A    F   L      +  A
Sbjct: 191 NYT------------PRVEIVTNVEPDHLDSYGTAEAFETA-FVDFAHRLVPGGLLVACA 237

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFI--------------HLKKVCAIHNKQQVTIS 294
            DA +  + + A   G RV++  + G                  +++  A   +  +T++
Sbjct: 238 ADAGALRLAQSAAAEGLRVVTYSFAGPDTLPGGVLVGEGHVHLDIQERGASSTRGLLTLT 297

Query: 295 V--------------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                               + +  +PG+    +A  A    I +G++ AL+   L    
Sbjct: 298 TAAGREPAGGAGEEPHHGPVELVLAVPGDHVALDAAGAWAAGIELGVEPALMARALGAFG 357

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQG 397
               RFE  G  + G R+  DYAH    +E +L+  R +     GR++V+F         
Sbjct: 358 GTGRRFEDRG-EADGVRVIDDYAHHPTEIEALLRTARGVAQERGGRVLVLFQPHLFSRTR 416

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAE-IIHGIPGFIEK--GNRIEAIRT 451
                   AL LAD  +VTD  P  E   D   I  + +   +PG   +    R++A   
Sbjct: 417 AFADRFGQALALADAVVVTDVYPARETQADFPDITGDTVAQRVPGGTARFVAERLDAAHA 476

Query: 452 AIEMLNKQDVLVVAGKGHET 471
             ++    D+L+  G G  T
Sbjct: 477 VADLARPGDLLLTVGAGDVT 496


>gi|294852759|ref|ZP_06793432.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
 gi|294821348|gb|EFG38347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
          Length = 467

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
              V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AVFVLSPGVPLTHPQ-------PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + +G      G   T                     L+     
Sbjct: 120 TGTNGKSTTTALIAHIIKATGRDMQLGGNIGT-------------------AILTLEPPC 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ADRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              AII  DDAY + +  R H AG RV+ +  +      +      +   Q   I  E  
Sbjct: 215 SGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEID-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C++ G+    +   L+    +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +V+ +  +N+ E     + +       +V
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWIV 359


>gi|85712532|ref|ZP_01043580.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
 gi|85693666|gb|EAQ31616.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
          Length = 489

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 144/424 (33%), Gaps = 54/424 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA    +          I +V    + L+      +G      +AV GT GK
Sbjct: 79  GADVVVVSSAIKPDNVELDAAQQQRIPIVRRA-EMLAELMRFRHG------IAVAGTHGK 131

Query: 127 SSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  +  ++    +F IG     +     +     S  YL   ++       + +
Sbjct: 132 TTTTSLVASVFAQAERDPTFVIGGLLNSAG----SNARLGSSKYL---IAEADESDASFL 184

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +    +        F   LP    A+
Sbjct: 185 ---------------HLQPMVAVVTNIEADHMDTYGGDFSRLLDTYVDFLHNLPFYGLAV 229

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKD-FDFL 303
           +  DD   +E++ R      + ++ G+             H  Q    +  +G    +  
Sbjct: 230 MCIDDPAVRELIPRVGR---QAITYGFSEDADVRAVDYHQHQGQSHFKVLRDGHAPLNVS 286

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---------TNSR 354
             LPG   V NAL A  +    GI+   +   L K   +  RFE+ G             
Sbjct: 287 LNLPGRHNVLNALAAVAVASDEGIEDDAIQRALNKFEGIGRRFEYHGECRVSGWSTETPD 346

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +  DY H  + ++  +K  R      R+++ F                  L   D  
Sbjct: 347 GVMVVDDYGHHPSEVDATIKAARQGWPDKRLVMAFQPHRYSRTRDLYEDFVNVLSQVDTL 406

Query: 414 IVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVA 465
           ++ +     E P        +   I   G    I   +  +A+   I ++L   D+L+  
Sbjct: 407 LLLEVYGAGETPISGADSRSLCRSIRQRGQLDPIYVSD-TDALLEIIGDVLQPGDLLLTQ 465

Query: 466 GKGH 469
           G G+
Sbjct: 466 GAGN 469


>gi|325962950|ref|YP_004240856.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469037|gb|ADX72722.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 458

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 101/434 (23%), Positives = 158/434 (36%), Gaps = 48/434 (11%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFS-----ATIRSNTPILVVDNTRKFL-----SLFASRLY 110
            +  A GA   V  +A +L D       + IR + P LV                A+ + 
Sbjct: 51  AELAAAGARIAVGYAAANLGDAQTVVAGSAIRPDNPELVAAREAGLPVLHRSQALAATMG 110

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           G     ++ V GT GKS+  S V  + Q +G   SF IG  + + +   +    T     
Sbjct: 111 GD---TVVTVAGTHGKSTTTSMVTILLQGAGLDPSFAIG--ANVPALGVNAAHGTS---- 161

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                      G+     + S      +R           TN+  DH+D++ T +A + +
Sbjct: 162 -----------GIFVAEADESDGSFLNYR-----PRIAVVTNVEPDHLDHYGTAEAVYES 205

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNK 288
             R F  LLP +   +  ADDA +  + +R       RVL  G   +      V      
Sbjct: 206 FDR-FTGLLPADGLLVACADDAGALALAERTRKRGNTRVLLYGTSAE---ADLVLHDGGP 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +S     +     +PG     NA  A  + + +G+D       L        RFE 
Sbjct: 262 GDTAVSTPSGRYPLALQVPGRHNALNAAAAFAVALELGVDPGAAAAALAHFSGASRRFEL 321

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIAL 407
            G  +RG R++ DYAH    +   L   R++  G  + V+F         +       AL
Sbjct: 322 KG-EARGVRVFDDYAHHPTEVRAALAAARSVAGGHKVHVLFQPHLFSRTREFAQEFADAL 380

Query: 408 DLADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +LAD A+V D  P  ED  P      I   + G        +A+        + D+++ A
Sbjct: 381 NLADTALVLDIYPAREDPIPGVTSQLIADHLGGGGRLVAAADAVAALAAAAAEGDIVLTA 440

Query: 466 GKGHETV---HIVT 476
           G G  T     IV 
Sbjct: 441 GAGDVTAYGPQIVE 454


>gi|149190169|ref|ZP_01868445.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
 gi|148836058|gb|EDL53019.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
          Length = 486

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 150/428 (35%), Gaps = 49/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I   A  +VVS+A   ++          I VV    + L+      +G    
Sbjct: 73  GHQ--ASNIEN-ASVVVVSTAIDPENQELVAAKELRIPVVRRA-EMLAELMRFRHG---- 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  + V QI   +G+    +      S+       ++         ++
Sbjct: 125 --IAVAGTHGKTTTTALVTQIYSEAGMDPTFVNGGLVKSAGTNARLGSS------RILIA 176

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D +             F 
Sbjct: 177 EADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFDTLKQTFIDFL 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++    +   +V++ G+     + ++       + + T+ 
Sbjct: 222 HNLPFYGQAVMCVDDPVVRELI---PSVSRQVITYGFSDDADVRIENYRQDGQQGKFTVV 278

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G++  +    +PG+    NA  A  +     I    ++  +        RFE +G   
Sbjct: 279 RKGRENLEITLNIPGQHNALNAAAAIAVATEDNIADEAIVNAMLGTEGTGRRFEHLGEFE 338

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T +    +  DY H    +++ +K  R      R++++F                  L+ 
Sbjct: 339 TGNGKVMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYSRTRDLYDDFANVLEQ 398

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIE-MLNKQDV 461
            D+ ++ D     E P        +   I   G    +   + + A+ + +  +L + D+
Sbjct: 399 VDVLVMLDVYSAGEAPIAGADGRSLCRTIRTRGKLDPVFVPD-VNALPSVLSNLLQEGDL 457

Query: 462 LVVAGKGH 469
           L+  G G 
Sbjct: 458 LLTQGAGD 465


>gi|268610479|ref|ZP_06144206.1| UDP-N-acetylmuramyl pentapeptide synthase [Ruminococcus
           flavefaciens FD-1]
          Length = 535

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 108/316 (34%), Gaps = 23/316 (7%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           A R+ G+ P  + + +TG+ GK+S+  ++ ++         +     T  SF     +T 
Sbjct: 180 AKRILGECPTLHKVGITGSYGKTSMKFYLDELLNS------KYNTLKTPESFNTPMGVTI 233

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
               YL     Y   +      + A      +   D  +   G  T++G  H++   + +
Sbjct: 234 TIRNYLKPTHEYFICE------MGARRVHEIKELCDIAEPHDGIITSVGPQHLETFGSIE 287

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              N K  L + +  K        D+     + K+A      +L    +G       +  
Sbjct: 288 NVLNTKFELADCVKAKGGKIYFNGDNEL---IRKKAPEYEGAILYGLQEGNDYRATDISV 344

Query: 285 IHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                + T++  G +   F   L GE  V N L A       GI    +   ++++  VP
Sbjct: 345 SSRGTEFTVTAPGGESHRFSTKLLGEHNVQNVLGAIAYAHGTGIPLEKLTLPVKRIQAVP 404

Query: 344 GRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI- 401
            R + +     G     D Y    +     L  +  +     I+V     +    +  + 
Sbjct: 405 HRLQLLD-KGNGLTFIDDAYNSNPSGCRAAL-AVLELFDACRILVTPGMVELGAKQEELN 462

Query: 402 --MGKIALDLADIAIV 415
              G+ A    D  ++
Sbjct: 463 FEFGQEAAKSCDYIVL 478


>gi|289549042|ref|YP_003474030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
 gi|289182659|gb|ADC89903.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
          Length = 422

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 90/425 (21%), Positives = 159/425 (37%), Gaps = 58/425 (13%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLS-----LFASRLYGKHPENILAVTGTSGKSSV 129
                   S  I  + PI   +  RK +        A R +       +A+TGT GKS+ 
Sbjct: 43  EEVDTLVLSPGIPPSHPIWQ-EAVRKGIEVIGELELAWRFFE---GTAIAITGTDGKSTT 98

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 I +       + G      S+               KAL+ L          E 
Sbjct: 99  TRLSYLILRSYFSHVEEGGNIGVPFSYLVMKNP---------KALAVL----------EV 139

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS       L   +   G+F N   DH+D+H   + Y  +K  +F    P++   +    
Sbjct: 140 SSFQG--KTLKTFRPHVGAFLNFSEDHLDWHPDLRDYLWSKYNIFSRQTPEDWILLN--- 194

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                + + R   +  R +  G  G   H+K+  A  +++++  SVE         L G+
Sbjct: 195 ---GTQKVTRDTPSPARKVFFG-DGCEAHVKEDGAYWSEEKL-FSVED------IKLIGK 243

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSNS 368
             +YNALVA  +   +G+ +  + E L     +P R E VG    G  +Y D  + T N+
Sbjct: 244 HNLYNALVACVIGRIMGVPTDRMKEVLRDFRGLPHRLELVGDFG-GVLVYNDSKSTTPNA 302

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L+     + ++  GR+I++   G D+      +   +   +    ++       E   +I
Sbjct: 303 LQA---ALGSMPDGRVILI-AGGKDKGASFEHLCPLVTQKVKHAVLI------GEAKRRI 352

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            A+   G        +  EAIR A       D+L+ +     +  + +N E++      +
Sbjct: 353 -ADAWKGCTQVSLASSLDEAIRMAQREAKPGDILLFSPACS-SFDMFSNYEERGETFKKL 410

Query: 489 IREIL 493
           +REI 
Sbjct: 411 VREIF 415


>gi|288553163|ref|YP_003425098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
 gi|288544323|gb|ADC48206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
          Length = 450

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 156/417 (37%), Gaps = 56/417 (13%)

Query: 61  PQAIAQ-GAEAIVVSSAYSLQDFS-------ATIRSNTPILVVDNTRKFLS----LFASR 108
            +A+ + G + +      SL D           I  + PI+     R          AS 
Sbjct: 49  AKALEKKGIKVVCGEHPLSLLDQELDCVVKNPGIPYHNPIVKEAVRRNIPVITEVELASV 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L      +++A+TG++GK++  + + ++ + S  +    G   T+S       +   +  
Sbjct: 109 LSE---ADMIAITGSNGKTTTTTLIYEMLKNSAKNPLIAGNIGTVS-----CDVAKGAAS 160

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                           + +EASS  L     +          NL   H+DYH T++ Y  
Sbjct: 161 D-------------DVIVLEASSFQLL--GTENFHPNVSVLLNLFDAHLDYHGTKEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK ++      ++   +   DD    +V +++  A     +     + +++ +  +I+ K
Sbjct: 206 AKSKITANQT-EDDVFVYNLDDPLVSQVAEKSKAAKLPFSTKEVVSEGVYVNQ-GSIYFK 263

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+ I++          LPG   V N L A G  + +G     +   L+    V  R +F
Sbjct: 264 DQLIIALS------EVVLPGSHNVENILAAVGAAMTMGAKVTQIQHVLKTFSGVEHRLQF 317

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V   +   R++ + +  +N L    K +   +    +++   G DR      +   ++  
Sbjct: 318 VKKIND--RLFYNDSKATNILAAK-KALEAFSQP--VILLAGGLDRGNEFDELASSLSNV 372

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-IEAIRTAIEMLNKQDVLVV 464
            A +A         E  EK+           +E  +R  +A+  A  +  + DV+++
Sbjct: 373 KALVAF-------GETKEKLARTAKGAGIAEVEYADRVKDAVECAYRLSEEGDVILL 422


>gi|284031631|ref|YP_003381562.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
 gi|283810924|gb|ADB32763.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
          Length = 953

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 134/394 (34%), Gaps = 48/394 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++ A  +  + +  G     +G TST      +  +          A  
Sbjct: 519 PIVAVTGTNGKTTTARMISHVFKGLGRK---VGMTSTDGVVIDERLVIRADASGPKSARM 575

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L +  V     E +  G+ +  L   +       N+  DH+      T +   + K  L
Sbjct: 576 VLQNPRVDFAVFEVARGGILREGLGYERNDVAVVLNIQPDHLGLRGVDTLEQLADVKAVL 635

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E  +P++  A++ ADD   +++ ++         +     +     +       + V +
Sbjct: 636 VEA-VPRDGFAVLNADDPLVRKMRRKCSGQVVWFSTAEAGSEVREYIEGHCRRGGRAVVL 694

Query: 294 S-------------VEGKDFDFLFPLPGEF------QVYNALVAAGLCIAIGIDSALVLE 334
                                +   LP  F       V N + AA    A G     + +
Sbjct: 695 ERSELGDMIIMKHGRRSMQLAWTHLLPATFGGRAMMNVQNVMAAAAAAFAAGAPLHDIRQ 754

Query: 335 HLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEM----------ILKNIRTITSG 382
            L   +                G  + VDY H + ++ M           L     +   
Sbjct: 755 GLRTFNTSYYLSPGRLNEIEVDGRHVIVDYCHNAPAMRMLGDFVDKLGESLGASSEVGRP 814

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIE 441
             I V    GDR       +G++A    D+ +V +D   R     +    I+ G+   I 
Sbjct: 815 SRIGVIATAGDRRDDDMRELGEVAAQHFDVVLVREDTRLRGRRRGESAELIVEGVRAAIA 874

Query: 442 KGNR----------IEAIRTAIEMLNKQDVLVVA 465
           +G R          ++A+R A+   N+ D++V+ 
Sbjct: 875 QGARCRSVETVLEELDAVRHALTRSNRGDLVVLC 908


>gi|229086477|ref|ZP_04218649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
 gi|228696794|gb|EEL49607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
          Length = 450

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 144/397 (36%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYRISK---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +   T      +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQTAKENEIVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    K   ++I 
Sbjct: 176 -----------VETFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQT-KADYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    + + +      + S     +     K  A++ K +  + ++         LP
Sbjct: 224 ADDADVMALSENSKGQKV-LFSATKVIEDGAYIKEDALYFKGEKVVDIKD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +    G+ +  ++  L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLSGVANEAIIAVLKRFTGVKHRLEYVTTLNN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     ++   G DR      ++       A +A           P+ 
Sbjct: 335 -MLATEKALSAFTQPT--ILLAGGLDRGNEFDDLIPYFEHVKAIVAYGQT------APKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++A    G+       N  EA+  A  +    DV+++
Sbjct: 386 VKAAQKAGLDMIETVDNLEEAVEKAYALSADGDVILL 422


>gi|169344117|ref|ZP_02865100.1| Mur ligase family protein [Clostridium perfringens C str. JGS1495]
 gi|169297728|gb|EDS79827.1| Mur ligase family protein [Clostridium perfringens C str. JGS1495]
          Length = 553

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 133/371 (35%), Gaps = 30/371 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK+S +  + +  +  G   +  G   T      +  +          A  
Sbjct: 157 PIVSITGTNGKTSTSRLIYKGFENLG---YFSGLAMTGGIIINNEFVKKGDTTGFYSAKK 213

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+  
Sbjct: 214 VLTNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLIT 273

Query: 234 FEELLPKESPAIIYADDAYSKEVMKR---------AHNAGCRVLSVGYQGKFIHLKKVCA 284
             E+LP+     I   +    EV++            N          +  +    +   
Sbjct: 274 TREVLPEGKV--IIKAEPKLYEVLQTKENLVLFNSKKNKYIEKHMKNDKEAWFVEDENVI 331

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--- 341
             + +   I    KDF F      +  + N LV+      +  +   V++ L+ +     
Sbjct: 332 FFDGKDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVY 391

Query: 342 -VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
              GR   +   +   +I +DY H     E +      I   +II +    GDR      
Sbjct: 392 NNIGRQNIIELEN--FKIILDYGHNPEVFEELFYLANNIKRNKIISIVSSPGDRLDEYIK 449

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTA 452
            +GKIA   +D  I+ +  + R  +  +I   I  GI     K        +  EAI+ A
Sbjct: 450 ELGKIAGKNSDTIIIKETFDRRGREELEITNLIKSGINEIENKSVEVLSIIDEEEAIKKA 509

Query: 453 IEMLNKQDVLV 463
           I M  + D++V
Sbjct: 510 ISMAKEGDIIV 520


>gi|30248992|ref|NP_841062.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
 gi|60390554|sp|Q82VS5|MURD_NITEU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30138609|emb|CAD84900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
          Length = 471

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 142/402 (35%), Gaps = 38/402 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG +AI +S   ++ +          + V+ +   F               ILA+TG++G
Sbjct: 66  QGIDAIAISPGVAVAEPLVQAALQQGVPVIGDIELFAVALDQYAP--PGTKILAITGSNG 123

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH- 184
           K++V S V ++ + +G      G                  P  L   +  + +    H 
Sbjct: 124 KTTVTSMVGEMVKNAGWDVEVAGNIG---------------PAALDALMQRMDANKWPHL 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SS  L+      ++  A +  NL  DH+D + + + Y  AK R+F          
Sbjct: 169 WALELSSFQLE--TTSSLRPDAATVLNLSEDHLDRYDSIEEYAAAKARIFSRPHNNGCVQ 226

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  DDA    +  +      + ++ G        ++   +     V ++          
Sbjct: 227 ILNRDDARVYAMADK----NSKQVTFGLSAPVSD-EEFGLLPGGSDVWLAQGSTHLLKTS 281

Query: 305 PLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            L         NAL A  LC A+ +    +L  L     +P R + V      G  + D 
Sbjct: 282 ELAVAGLHNAANALAALALCRAVDLPFEPLLHALRTFRGLPHRMQKVAE--FNGVTFYDD 339

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           + ++N    +   +        +++   G  + Q   P+   ++  +  + ++       
Sbjct: 340 SKSTNIGSAV-AALNGFRKN--VILIAGGDGKGQDFSPLEQPVSKHVRSVVLL------G 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D +K+   I              EA++ +  +    DV+++
Sbjct: 391 RDADKVAQAIQASNVPIHRVTTMDEAVQVSFLLAEHGDVVLL 432


>gi|21910712|ref|NP_664980.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS315]
 gi|28895598|ref|NP_801948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes SSI-1]
 gi|94990778|ref|YP_598878.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10270]
 gi|47606755|sp|Q879A1|MURD_STRP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76363881|sp|P0C0D7|MURD_STRPY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595695|sp|Q1JG10|MURD_STRPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3090871|gb|AAC38404.1| uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate ligase
           [Streptococcus pyogenes]
 gi|21904915|gb|AAM79783.1| putative uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate
           ligase [Streptococcus pyogenes MGAS315]
 gi|28810847|dbj|BAC63781.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptococcus pyogenes SSI-1]
 gi|94544286|gb|ABF34334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10270]
          Length = 452

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D         P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDEDFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 108 FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 152

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 153 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +LK     
Sbjct: 205 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTQATVIPFSTQKVVDGAYLKDGILY 260

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 261 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 314 LQRVG-QIKDITFYNDSKSTN--ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 369

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 370 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|290580950|ref|YP_003485342.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
 gi|254997849|dbj|BAH88450.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
          Length = 451

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 144/425 (33%), Gaps = 54/425 (12%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS----- 103
           G   D +      + +G + I  S    L D +       P +   N    + L      
Sbjct: 40  GKPFDENPSAQALLEEGIKVICGSHPLELLDEAFAYMVKNPGIPYTNPMVVRALEKNIPV 99

Query: 104 ----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A  +       I+ +TG++GK++  + +  +   +G S+   G    I   A +
Sbjct: 100 ITEVELAYLISE---APIIGITGSNGKTTTTTMIADVLNHAGQSARLSG---NIGFPASE 153

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                     L   LS     G                  +         TNL   HIDY
Sbjct: 154 VAQPVTEKDILVMELSSFQLMG-----------------TESFHPHMAVITNLMPTHIDY 196

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H + + Y  AK  + + +  K+   + +  D  +K++  +         S   +    +L
Sbjct: 197 HGSFENYIEAKWNIQKNMTEKDFLVLNFNQD-LAKDLANQTQTKIIP-FSTKEKVDGAYL 254

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                    Q +  + E         +PG   V NAL    +    G+ +  + E L   
Sbjct: 255 DGQMLCFKGQAIMSASE-------LGVPGSHNVENALATIAVAKLSGVSNETIRETLIHF 307

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R + +G N  G + Y D   T+  +    K +        +++   G DR     
Sbjct: 308 GGVKHRLQSLG-NIAGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFD 363

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  I   L  + I+ +  PR +      A +  G+  ++   +  +A R A +  +  
Sbjct: 364 ELVPDIKG-LKKMIILGESAPRLK-----HAAVQAGVT-YLNAKDVAQATRIAFQEASPG 416

Query: 460 DVLVV 464
           DV+++
Sbjct: 417 DVVLL 421


>gi|227510539|ref|ZP_03940588.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190191|gb|EEI70258.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 443

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 120/376 (31%), Gaps = 58/376 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+G  GK+S    +  +      + + IG  S       + R          +     
Sbjct: 107 IGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGS--GRGVPNARFFVYEADEYRRHFL-- 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    +      TN+  DH DY++      +A  + F   
Sbjct: 163 -----------------------ATEPDYAIMTNIDFDHPDYYKNIDDVQDA-FQTFANQ 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
             K   A  + DD   +++      A   +   G           V          +  +
Sbjct: 199 TKKGIFA--WGDDKRLRQL-----KAKVPIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFK 251

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F  PL GE  ++N+L    +  +  +D   +   L+    V  RF     +  G
Sbjct: 252 GKDLGEFTVPLFGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTFDGVKRRFSERKIS--G 309

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  +   R    S +I VVF                 +L+LAD   
Sbjct: 310 MTIIDDYAHHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAKSLNLADEVF 369

Query: 415 VTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDVLVVAGKG 468
           +T     PR E   K+ +E    +   I KG R   I +A  M        DV++  G G
Sbjct: 370 LTQIYSSPR-ESSGKVSSE---DLSKKITKGGR---ILSADNMSPLLDYDNDVIIFMGAG 422

Query: 469 HETVHIVTNGEKKMSV 484
                 +   EK    
Sbjct: 423 D-----IQKYEKTYED 433


>gi|300173574|ref|YP_003772740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887953|emb|CBL91921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 448

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 123/349 (35%), Gaps = 41/349 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++  S ++ + +  G     +     I     +      +   L   LS
Sbjct: 111 RLIAVTGSNGKTTTTSLIRDMLKSDGQK---VTTAGNIGIPVCEVIKDLTADDTLLLELS 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G                    I+      TN+  +H+DYH T++ Y  AK +L +
Sbjct: 168 SFQLMG-----------------TPDIRPDIALITNIFANHLDYHGTRENYVAAKFQLTK 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ AD   + E +K+ H    +V++         ++            +  
Sbjct: 211 NQT-SNQLLVLNADGQDTDEFIKKTH---AKVVAFSRIKNDYTVRTDNVDLIISDNHLMP 266

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     L G   + N + A  +    G+    +   LE    V  R + V T++  
Sbjct: 267 LSG-----IKLVGPHNLENIVAAVTVAKLAGVHDTAIRHVLETFGGVEHRLQHVLTDN-- 319

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G ++ + +  ++ +E     + +     I      G DR      ++  ++   A IA  
Sbjct: 320 GVVFYNDSKATD-IEATQTALNSFHQPTIW--LAGGLDRGDDLMRLLPNLSHVKAVIAF- 375

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E  +KI A         I   +  +A+  A+++    DV+++
Sbjct: 376 ------GETQQKIVAVARAANKPVITVDDVEQAVPVAVKLAVTGDVVLL 418


>gi|255037241|ref|YP_003087862.1| UDP-N-acetylmuramate--L-alanine ligase [Dyadobacter fermentans DSM
           18053]
 gi|254949997|gb|ACT94697.1| UDP-N-acetylmuramate/alanine ligase [Dyadobacter fermentans DSM
           18053]
          Length = 468

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 125/360 (34%), Gaps = 33/360 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + V GT GK++ +S V  I + +      +  T+ +    Q+          L +   
Sbjct: 117 RTIGVAGTHGKTTTSSLVAHILRHA-----HVNSTAFLGGITQNYGTNL----LLNEPTD 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L        + E     L               T+   DH+D +   +A   +  R + 
Sbjct: 168 KLEEVFCVVEADEFDRSFLTLF------PEIAIVTSTDADHLDIYGKHEAVLES-FRDYV 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +             + ++ ++ A +   +V +        H + +   + +    +  
Sbjct: 221 GQIDGNGAL-------FLRDGLEIADSCKAKVFTYSLNSGLYHSENIRIENARFVFDLVY 273

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G         +PG   + N++ A+ + + IG+    + E LE    V  RFE+     +
Sbjct: 274 PGGVIGGIAMKIPGYHNIENSIAASAVALYIGVQPTKIREALESYGGVKRRFEYQ-LEEK 332

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G     DYAH    +E  L +++ +  GR +  +F                 +L LAD  
Sbjct: 333 GNVYIDDYAHHPTEIEAFLSSVKGLYPGRHVTAIFQPHLFTRTRDFADGFAESLSLADRL 392

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR----IEAIRTAIEMLNKQDVLVVAGKGH 469
           +V D  P  E P  I       I   +   ++     E +   ++ LN  D++V  G G 
Sbjct: 393 LVLDIYPARELP--IGGVDSQMILDKVTVADKQLVAKEQVLQLLKELNT-DIVVTIGAGD 449


>gi|312143936|ref|YP_003995382.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904587|gb|ADQ15028.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 453

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/415 (18%), Positives = 145/415 (34%), Gaps = 48/415 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV +SA    +       N  I +++       + A  +  K     +A+ GT GK
Sbjct: 64  GADLIVKTSAIPENNPEINAAQNNRIKIIERAE----MLAYLMRNK---KTIAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + +  I   +      +     +  + +D +                  +G   ++
Sbjct: 117 TTTTAMLASIMTAADKDPAIM-----VGGYLEDIKGNISDG------------KGEYFIT 159

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S G   +            TNL  DH DY++     F A  + F +   K++  + 
Sbjct: 160 EADESDGSFLY----FDPYLLLLTNLELDHPDYYKDLAE-FKAIFKRFADKNEKKALVLY 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFP 305
             DD   K++ K       +  +   +     +K +    NK        +         
Sbjct: 215 NGDDKNLKDLFKN----RKKTKAFSLKNYDYSVKNISYDKNKSSFDFYQADNFLMKINLS 270

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAH 364
             GE+ +YNA  A    + + I++  + + L+    V  RFE     + G   +  DYAH
Sbjct: 271 SAGEYNIYNAAAAVSTALELDIETKFIKKALKTFKGVGRRFELKAKINNGTVDVVDDYAH 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               ++ +LK ++ +   RI  VF         K       +   AD   +TD    SE 
Sbjct: 331 HPTEIKALLKAVKQMGYSRITAVFQPHRFSRTKKFLKEFSYSFVDADFVYLTDIFSASEQ 390

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAI----------EMLNKQDVLVVAGKGH 469
            ++  +  +      IEK +  E ++             E L   ++++  G G 
Sbjct: 391 YKETIS--MEKFSQEIEKHSNTE-VKYLADFDKIALQLKENLISGEIILTIGAGD 442


>gi|188994492|ref|YP_001928744.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas gingivalis
           ATCC 33277]
 gi|229620053|sp|B2RIF2|MURC_PORG3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188594172|dbj|BAG33147.1| UDP-N-acetylmuramate-alanine ligase [Porphyromonas gingivalis ATCC
           33277]
          Length = 456

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 132/410 (32%), Gaps = 50/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV + A        T   +    VV    + L            E  L V GT GK++ +
Sbjct: 70  IVYTPAVPADHSELTYFRSNGYRVVKRA-EILGEI------TLIERALCVAGTHGKTTTS 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  + ++S      +   + +   + + +             + L S     V VEA 
Sbjct: 123 TLLAHLLKQS-----HVDCNAFLGGISNNYQS------------NLLLSDKSDLVVVEAD 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H    +K      T+   DH+D + T + Y ++    F  L+      ++    
Sbjct: 166 EFDRSFH---HLKPFMAIITSADPDHMDIYGTAENYRDS-FEHFTSLIQSGGALVLKYGA 221

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
             +  +     +      S   +        +     +   T    G   +     +P  
Sbjct: 222 PVNPRL---GSDVSLFTYSSDDRQADYFASDITIRDGRLFFTWHYPGGQLEEVELGVPVH 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NA+ A  +    G+    +   +        RFE V    R   +  DYAH    L
Sbjct: 279 INVENAVAAMAIAHLNGVTVEELRSGIASFKGSHRRFEKVLDTER-VVLIDDYAHHPVEL 337

Query: 370 EMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           +  ++++R I S + I+ +F                 +L + D  ++ D  P  E P   
Sbjct: 338 DAAIRSVREIYSRKHIMGIFQPHLYSRTADFYQDFARSLSMLDEVVLLDIYPARELPLPG 397

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKGH 469
                I   I +     + K +        ++ L+     DV+++ G G 
Sbjct: 398 VTSRLILDLIENPNKTLVSKND-------LLDYLHGNEIPDVVLILGAGD 440


>gi|307704498|ref|ZP_07641406.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
 gi|307621911|gb|EFO00940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
          Length = 450

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 149/425 (35%), Gaps = 48/425 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPENILAVTGTSGKS 127
           ++   ++L   +  I  + P++    T+    L     A  +       I+ +TG++GK+
Sbjct: 68  LLDEEFALMVKNPGIPYSNPMIEKALTKGIPVLTEVELAYLISE---APIVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + + ++   +G      G    I   A     T      L   LS     GV     
Sbjct: 125 TTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTASDKDTLVMELSSFQLMGVQEF-- 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TNL   HIDYH + + Y  AK  + +  +      ++ 
Sbjct: 180 ---------------HPEIAVITNLMPTHIDYHGSFEEYVAAKWNI-QNKMTAADFLVLN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +   +KE+  +         ++         K   A     Q+    E         +P
Sbjct: 224 FNQDLAKELASKTQATVVPFSTLE--------KVDGAYLEDGQLYFRGEVVMAANEIGVP 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL    +    G+D+  + E L     V  R +FV    +G + Y D   T+ 
Sbjct: 276 GSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-EIKGVKFYNDSKSTN- 333

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +        +++   G DR      ++  I   L  + I+       +  E+
Sbjct: 334 -ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TGLKKMVIL------GQSAER 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           ++         +++  +  +A R A E+  + DV++++   + +  +  N E +  +  D
Sbjct: 385 VKRAADKAGVSYVDATDIADATRKAYELATQGDVVLLS-PANASWDMYANFEVRGDLFID 443

Query: 488 IIREI 492
            + E+
Sbjct: 444 TVAEL 448


>gi|306843220|ref|ZP_07475831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
 gi|306286585|gb|EFM58162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
          Length = 467

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
              V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AVFVLSPGVPLTHPQ-------PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + +G      G   T                     L+     
Sbjct: 120 TGTNGKSTTTALIAHIIKATGRDMQLGGNIGT-------------------AILTLEPPC 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ADRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              AII  DDAY + +  R H AG RV+ +  +      +      +   Q   I  E  
Sbjct: 215 SGTAIIGVDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEID-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C++ G+    +   L+    +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +V+ +  +N+ E     + +       +V
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWIV 359


>gi|260187151|ref|ZP_05764625.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447780|ref|ZP_06437524.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289420738|gb|EFD17939.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
          Length = 494

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 143/437 (32%), Gaps = 73/437 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVT 121
           GA A+V + A         I    P LV    R        ++ A  + G+     L VT
Sbjct: 73  GATAVVTTHA--------AIPKTNPELVEARRRGIPVVLRPAVLAKLMAGR---TTLMVT 121

Query: 122 GTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++  S +    Q  G   SF +G    +     +    +                
Sbjct: 122 GTHGKTTTTSMLIVALQHCGLDPSFAVG--GELGEAGTNAHHGSGD-------------- 165

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  + S   L Q+            TN+  DH+D++ + +AY  A    F E +  
Sbjct: 166 -CFVAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVS 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQV-------- 291
               ++  DD     + +RA   G RVL  G   G+ +    V                 
Sbjct: 219 GGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLAS 278

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++           +PG     NAL A    + IG  +  VL+ L     V  RFE VGT
Sbjct: 279 ELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGT 338

Query: 352 NSRG---GRIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGK 404
              G    R++ DYAH    +   L   R +      GR +VVF                
Sbjct: 339 CGVGKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFG 398

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IE 454
            AL+ AD   V D     E P       + G+ G     +    +R              
Sbjct: 399 RALNAADEVFVLDVYGAREQP-------LAGVSGASVAEHVTVPMRYVPDFSAVAQQVAA 451

Query: 455 MLNKQDVLVVAGKGHET 471
             +  DV+V  G G  T
Sbjct: 452 AASPGDVIVTMGAGDVT 468


>gi|229111382|ref|ZP_04240935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
 gi|228672158|gb|EEL27449.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
          Length = 450

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAIEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  I V          LP
Sbjct: 224 ADDADVMALSAYSKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVIEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|15609289|ref|NP_216668.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Rv]
 gi|15841644|ref|NP_336681.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31793332|ref|NP_855825.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis
           AF2122/97]
 gi|121638034|ref|YP_978258.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661968|ref|YP_001283491.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|148823361|ref|YP_001288115.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           F11]
 gi|167967845|ref|ZP_02550122.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|215403539|ref|ZP_03415720.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           02_1987]
 gi|215431082|ref|ZP_03429001.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           EAS054]
 gi|215446382|ref|ZP_03433134.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T85]
 gi|224990528|ref|YP_002645215.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798783|ref|YP_003031784.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232311|ref|ZP_04925638.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|254364957|ref|ZP_04981003.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551190|ref|ZP_05141637.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289745425|ref|ZP_06504803.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289754262|ref|ZP_06513640.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289758272|ref|ZP_06517650.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|294993538|ref|ZP_06799229.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           210]
 gi|297634741|ref|ZP_06952521.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731730|ref|ZP_06960848.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN R506]
 gi|306776402|ref|ZP_07414739.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|306780180|ref|ZP_07418517.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|306784925|ref|ZP_07423247.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|306789292|ref|ZP_07427614.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|306793620|ref|ZP_07431922.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|306803890|ref|ZP_07440558.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|306808462|ref|ZP_07445130.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|306968286|ref|ZP_07480947.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|306972515|ref|ZP_07485176.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|307080223|ref|ZP_07489393.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|307084805|ref|ZP_07493918.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|313659065|ref|ZP_07815945.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037857|sp|P65473|MURC_MYCBO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041507|sp|P65472|MURC_MYCTU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224704|sp|A1KKJ5|MURC_MYCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224708|sp|A5U4H9|MURC_MYCTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766013|sp|C1AQ68|MURC_MYCBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2104326|emb|CAB08641.1| Probable UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Rv]
 gi|13881896|gb|AAK46495.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31618924|emb|CAD97029.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis
           AF2122/97]
 gi|121493682|emb|CAL72157.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124601370|gb|EAY60380.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|134150471|gb|EBA42516.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506120|gb|ABQ73929.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Ra]
 gi|148721888|gb|ABR06513.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis F11]
 gi|224773641|dbj|BAH26447.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320286|gb|ACT24889.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|289685953|gb|EFD53441.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289694849|gb|EFD62278.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289713836|gb|EFD77848.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|308215190|gb|EFO74589.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|308326949|gb|EFP15800.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|308330384|gb|EFP19235.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|308334218|gb|EFP23069.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|308338014|gb|EFP26865.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|308345192|gb|EFP34043.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|308349498|gb|EFP38349.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|308354127|gb|EFP42978.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|308358069|gb|EFP46920.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|308362006|gb|EFP50857.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|308365639|gb|EFP54490.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|323719307|gb|EGB28449.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis CDC1551A]
 gi|326903769|gb|EGE50702.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis W-148]
 gi|328458546|gb|AEB03969.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 4207]
          Length = 494

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 143/437 (32%), Gaps = 73/437 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVT 121
           GA A+V + A         I    P LV    R        ++ A  + G+     L VT
Sbjct: 73  GATAVVTTHA--------AIPKTNPELVEARRRGIPVVLRPAVLAKLMAGR---TTLMVT 121

Query: 122 GTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++  S +    Q  G   SF +G    +     +    +                
Sbjct: 122 GTHGKTTTTSMLIVALQHCGLDPSFAVG--GELGEAGTNAHHGSGD-------------- 165

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  + S   L Q+            TN+  DH+D++ + +AY  A    F E +  
Sbjct: 166 -CFVAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVP 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQV-------- 291
               ++  DD     + +RA   G RVL  G   G+ +    V                 
Sbjct: 219 GGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLAS 278

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++           +PG     NAL A    + IG  +  VL+ L     V  RFE VGT
Sbjct: 279 ELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGT 338

Query: 352 NSRG---GRIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGK 404
              G    R++ DYAH    +   L   R +      GR +VVF                
Sbjct: 339 CGVGKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFG 398

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IE 454
            AL+ AD   V D     E P       + G+ G     +    +R              
Sbjct: 399 RALNAADEVFVLDVYGAREQP-------LAGVSGASVAEHVTVPMRYVPDFSAVAQQVAA 451

Query: 455 MLNKQDVLVVAGKGHET 471
             +  DV+V  G G  T
Sbjct: 452 AASPGDVIVTMGAGDVT 468


>gi|312622927|ref|YP_004024540.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203394|gb|ADQ46721.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 458

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 162/429 (37%), Gaps = 53/429 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS    L      +     I V+          A R      +NI+A+TGT+GK++  
Sbjct: 73  VIVSPGVPLSKRPLVLAHKKGIEVIGEI-----ELAYRFCK--SKNIVAITGTNGKTTTT 125

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V +I ++        G       F      ++   I++                +E S
Sbjct: 126 TLVGEILKKQYEDVVVCGNIGL--PFIDTIETSSEDTIFV----------------LEIS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE  + +    ++  D+
Sbjct: 168 SFQLE--TIKYFKPKVGCILNITPDHLNRHLTMENYTKAKMRIFEN-IDEMGYTVLNYDN 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
             +++++  A              K     +         +  + EGK  + +      +
Sbjct: 225 NITRDLIGLAKGNVIVF------SKTKTQFENVVFVENDVIYFTFEGKTQEVMKKDEIFI 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHT 365
           PG+  + NAL A    +  GI+   + + L+    V  R EFV     G + Y D     
Sbjct: 279 PGQHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFV-AEINGIKFYNDSKGTN 337

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +++ E  L           I++   G D+ +        +A  +  + ++       +  
Sbjct: 338 TDAAEKALNAFEN-----PIILIAGGYDKGESFEKFASLVAKKVKKVFLL------GQTK 386

Query: 426 EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           +KI +E+   G   F       EA+R + E     D+++++     +  +  N E++  +
Sbjct: 387 QKIASELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLLS-PACASWDMFENYEQRGRM 445

Query: 485 DCDIIREIL 493
             + + E+L
Sbjct: 446 FKEYVNELL 454


>gi|89892892|ref|YP_516379.1| hypothetical protein DSY0146 [Desulfitobacterium hafniense Y51]
 gi|89332340|dbj|BAE81935.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 885

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 119/357 (33%), Gaps = 30/357 (8%)

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + I +        +G T+T   +     L          A   L    V    +E +  G
Sbjct: 496 RMIGKMLMDRELAVGMTTTDGIYVGGKLLLKGDTTGPESAQIVLRHPDVQVAVLETARGG 555

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           + +  L          TN+  DH+  +   + +   + K  L  E++   S  ++ ADD 
Sbjct: 556 ILRAGLAYDYADVAVVTNVANDHLGQYGMESLEDIAHVKS-LIAEVVRPHSYVVLNADDP 614

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-----ISVEG--------- 297
               V   A     +V+    +   + ++K  A+            +  +G         
Sbjct: 615 L---VASFARKTKGKVIFFSTEKDNLTIRKHLAVGGIAVFVRRGNILLCQGDQSHKICGV 671

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRG 355
           KD    +       + NAL A  +  ++G+ +  +   L +        R         G
Sbjct: 672 KDLPVTWNGKALHNLQNALAAIAVGWSLGLKAEGIRISLSEFTSDPECNRGRLNPYTIGG 731

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++++DY H +  ++ I + +R   +  ++      GDR       + ++A       I+
Sbjct: 732 VQVFIDYGHNAAGIKAIAQTLRKFKAPAVVGCVTVPGDRPDETIREVARVAARGFHRLII 791

Query: 416 TDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVV 464
            +D + R   P +I   I+           R        EA    ++     ++ V+
Sbjct: 792 REDGDLRGRRPGEIAGMIMEEAIASGMDPRRISVVLPEREAFCHGLDTCKPGEIFVM 848


>gi|254455302|ref|ZP_05068731.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082304|gb|EDZ59730.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 464

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 132/380 (34%), Gaps = 51/380 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
           GH    Q I + A  +VVSSA         I+ N P L+    R+        + A+ + 
Sbjct: 59  GHK--KQNINK-ATILVVSSA---------IKKNNPELLEAKKRQLPIYKRGEMLANIVS 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  + V G+ GK++  S +  I Q + +    I     I+S     +L        
Sbjct: 107 L---TKNIVVVGSHGKTTTTSLIASIFQETKIDPTIING-GVINSINNSAKLGKSD---- 158

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L    S G                    I       TN+ R+H+DY+++     N+ 
Sbjct: 159 WSILEADESDGSFVY----------------IPPTYSIITNIDREHMDYYRSM-NELNSY 201

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              F + +P    + I  DD  ++ ++K+  N       +  +  F  +K +    +  Q
Sbjct: 202 FLNFVKKVPSFGKSFICLDDKNNRHLIKKIENKNFYSYGLDQKSNFC-IKNIKQHKDYSQ 260

Query: 291 VTISV------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             + +            F  PL G   + N++ A  + + +G+    + + L+    V  
Sbjct: 261 FDLKIRLPNKKNQMIKKFRIPLLGNHNIKNSVAAIAVSLTVGLSVLNIKKGLKNFKGVQR 320

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMG 403
           RF  + T ++    + DYAH    +  +L  I+ +      I +F               
Sbjct: 321 RFNKIFTLNK-VDFFDDYAHHPTEIMEVLDGIKNVYKDYEKICIFQPHRISRLKDLKTEF 379

Query: 404 KIALDLADIAIVTDDNPRSE 423
             A   AD  I+       E
Sbjct: 380 SHAFKNADKVILFPIYTAGE 399


>gi|309802481|ref|ZP_07696587.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308220881|gb|EFO77187.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 496

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 125/437 (28%), Gaps = 58/437 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SSA    +            +V  +   L+L          +  + V G  GK
Sbjct: 63  GARTVVFSSAIKPDNPEIVAAYEAGERIVHRS-DILALLM------QSKRAVTVAGAHGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S +  I   +G             S+A    +       L    +   S  V    
Sbjct: 116 TTTSSMLAHILVNAGEGE------LADPSYAIGGSIQGKDGATLDGGHAGKGSVLVAEAD 169

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S                  TN   DH+D++ T+  Y  A     E         I+
Sbjct: 170 ESDGSFA-------KYHPEIAIITNAEADHLDHYGTEAKYRAA---FVEHAGRAGKAVIM 219

Query: 247 YADDAYSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVT----------- 292
             DD  +  V++       R   V S         L     +  + +             
Sbjct: 220 CGDDDGALAVLRALKTEVARHVVVYSTQPSEDLGDLNGAAHVRIESESESAQSGTEHFIL 279

Query: 293 ------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 + VE +       +PG     NA  A    + +G+D                RF
Sbjct: 280 HLPAGLVDVEERRVPVTLTVPGIHNARNATAALLATVMLGVDVERAAAAATSFLGAARRF 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +  G+ ++   +  DYAH    +  +L    R      I V+F                 
Sbjct: 340 QIRGSVNQ-VTVIDDYAHHPTEIAALLDAARRRYPEAGIHVIFQPHLFSRTMFFAREFAE 398

Query: 406 ALDLADIAIVTDDNPRSED--------PEKIRAEIIHGIPGFIE-----KGNRIEAIRTA 452
           AL  AD  IVT   P  E         P+ I  E +       +       +   A +  
Sbjct: 399 ALAKADDVIVTGIFPAREKQEDFPTVSPDTIVNEAVKLEHEPADDWIRGVDDMRTAAQMM 458

Query: 453 IEMLNKQDVLVVAGKGH 469
           +   +  DV+   G G 
Sbjct: 459 VMRAHHGDVIFTVGAGD 475


>gi|62290326|ref|YP_222119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700250|ref|YP_414824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis biovar Abortus 2308]
 gi|189024559|ref|YP_001935327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237815833|ref|ZP_04594830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|254689627|ref|ZP_05152881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 6 str. 870]
 gi|254697769|ref|ZP_05159597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730658|ref|ZP_05189236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 4 str. 292]
 gi|256257877|ref|ZP_05463413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 9 str. C68]
 gi|260546868|ref|ZP_05822607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260755155|ref|ZP_05867503.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758374|ref|ZP_05870722.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762200|ref|ZP_05874543.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884168|ref|ZP_05895782.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297248713|ref|ZP_06932431.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
 gi|75496533|sp|Q57C76|MURD_BRUAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595643|sp|Q2YM69|MURD_BRUA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62196458|gb|AAX74758.1| MurD, UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616351|emb|CAJ11408.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Pyridine
           nucleotide-disulphide oxidoreductase, class
           I:Folylpolyglutamate s [Brucella melitensis biovar
           Abortus 2308]
 gi|189020131|gb|ACD72853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237789131|gb|EEP63342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|260095918|gb|EEW79795.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260668692|gb|EEX55632.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672632|gb|EEX59453.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675263|gb|EEX62084.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873696|gb|EEX80765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297175882|gb|EFH35229.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
          Length = 467

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
              V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AVFVLSPGVPLTHPQ-------PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + +G      G   T                     L+     
Sbjct: 120 TGTNGKSTTTALIAHIIKATGRDMQLGGNIGT-------------------AILTLEPPC 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ADRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              AII  DDAY + +  R H AG RV+ +  +      +      +   Q   I  E  
Sbjct: 215 SGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEID-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C++ G+    +   L+    +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +V+ +  +N+ E     + +       +V
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWIV 359


>gi|23502304|ref|NP_698431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           1330]
 gi|148559574|ref|YP_001259326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ovis
           ATCC 25840]
 gi|161619381|ref|YP_001593268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           canis ATCC 23365]
 gi|225852915|ref|YP_002733148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis ATCC 23457]
 gi|254694117|ref|ZP_05155945.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 3 str. Tulya]
 gi|254702154|ref|ZP_05163982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 5 str. 513]
 gi|254704691|ref|ZP_05166519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 3 str. 686]
 gi|256061490|ref|ZP_05451634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           neotomae 5K33]
 gi|256113986|ref|ZP_05454769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263604|ref|ZP_05466136.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260566062|ref|ZP_05836532.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|261214417|ref|ZP_05928698.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261325497|ref|ZP_05964694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261752724|ref|ZP_05996433.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261755384|ref|ZP_05999093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|265995328|ref|ZP_06107885.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|30316052|sp|Q8FZP2|MURD_BRUSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23348281|gb|AAN30346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis
           1330]
 gi|148370831|gb|ABQ60810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ovis ATCC
           25840]
 gi|161336192|gb|ABX62497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella canis
           ATCC 23365]
 gi|225641280|gb|ACO01194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis ATCC 23457]
 gi|260155580|gb|EEW90660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|260916024|gb|EEX82885.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261301477|gb|EEY04974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261742477|gb|EEY30403.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261745137|gb|EEY33063.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|262766441|gb|EEZ12230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263093655|gb|EEZ17660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|326409457|gb|ADZ66522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis M28]
 gi|326539163|gb|ADZ87378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis M5-90]
          Length = 467

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
              V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AVFVLSPGVPLTHPQ-------PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + +G      G   T                     L+     
Sbjct: 120 TGTNGKSTTTALIAHIIKATGRDMQLGGNIGT-------------------AILTLEPPC 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ADRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              AII  DDAY + +  R H AG RV+ +  +      +      +   Q   I  E  
Sbjct: 215 SGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEID-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C++ G+    +   L+    +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +V+ +  +N+ E     + +       +V
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWIV 359


>gi|301165431|emb|CBW25002.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteriovorax marinus SJ]
          Length = 455

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/402 (15%), Positives = 123/402 (30%), Gaps = 59/402 (14%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV---SSAYSLQDFSATIRS 88
           E+S+DSR      +F+ + G   DG  FI   + +G + IV           +  +    
Sbjct: 22  ELSTDSRTYSGEGLFICLCGENFDGFNFIEPVLEKGCKNIVFRNNDENLERMNALSEKFQ 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRS----- 140
           +   + VD+    L   A++   +   +   +  +TG++GK++    +  +   +     
Sbjct: 82  DVTFIGVDSPLATLQSLANKRIKQFKNDGGFVFGITGSNGKTTTKEMLASLLSSAYGKEV 141

Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G  +  IG   TI S     +                         + A+  G   
Sbjct: 142 HATKGNLNNHIGVPLTILSAPTCCKYMIVE--------------------MGANHVGEIS 181

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP---KESPAIIYADDAYS 253
              +      G  +++G  HI      +  F  K  L++ +L      S  I+  +D Y 
Sbjct: 182 DLCEIAMPEFGIISSVGAAHIGLFGGIENIFKEKKSLYDYVLRFKTDRSKFIVNNEDKYL 241

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            ++     +    ++  G             I                    +  ++ + 
Sbjct: 242 SQI-----SPSEVLIKFGDSSDVDVTYDEGKIVINNV---------NIENVNILEKYNLS 287

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           N   A  L + I  D           + +P           G +I++D Y     S+E  
Sbjct: 288 NLASAYLLAVNIFPDKKDTFISAASEYRIPSLNRSEWIERNGKQIFLDAYNANPTSMESS 347

Query: 373 LKNIRTITSGRII------VVFGCGGDRDQGKRPIMGKIALD 408
           L +       + I       V G   +     +    +IA  
Sbjct: 348 LNSFVENMKKKGIPLDDVLFVLGDMNELGDYAKDEHERIARQ 389


>gi|256160167|ref|ZP_05457861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M490/95/1]
 gi|256255373|ref|ZP_05460909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           B1/94]
 gi|261222575|ref|ZP_05936856.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|265998540|ref|ZP_06111097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
 gi|260921159|gb|EEX87812.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|262553164|gb|EEZ08998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
          Length = 467

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 86/430 (20%), Positives = 148/430 (34%), Gaps = 57/430 (13%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    +S  +     + ++ +   F+     R +       +A+TGT+GKS+  + +  I
Sbjct: 79  HPQPHWSVDLARAAGVEIIGDVELFVRE---RNHIAPDCPFIAITGTNGKSTTTALIAHI 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G      G   T                     L+           VE SS+ +D 
Sbjct: 136 IKATGRDMQLGGNIGT-------------------AILTLEPPCADRFYVVECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   NL  DH+D H + + Y   K RL          AII  DDAY + +
Sbjct: 177 A--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA----SGTAIIGIDDAYCQAI 230

Query: 257 MKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             R H AG RV+ +  +      +      +   Q   I  E    + +  L G     N
Sbjct: 231 ADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEID-EIASLEGIGSLRGAHNAQN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A   C++ G+    +   L+    +  R E VG   RG  ++V+ +  +N+ E    
Sbjct: 290 ALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVLFVNDSKATNA-EATAP 346

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            + +       +V         G  P  G I    A    V       E   +  A +  
Sbjct: 347 ALSSFPQNIYWIV---------GGVPKAGGINSLTAFFPRVAKAYLIGEAAAQFAATLGS 397

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDV--------LVVAGKGHETVHIVTNGEKKMSVDC 486
            +P   E  + + A   A+      D         +V+      +     N EK+     
Sbjct: 398 AVP--FEISDTLAA---AVAHAT-GDAGNDAAPEPVVLLSPACASFDQFQNFEKRGDAFR 451

Query: 487 DIIREILGLI 496
           D +  + G++
Sbjct: 452 DAVLALPGVM 461


>gi|218134982|ref|ZP_03463786.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990367|gb|EEC56378.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
          Length = 526

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 105/306 (34%), Gaps = 25/306 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTG+ GK+SV  ++Q + Q       +     T  SF     +       L     
Sbjct: 183 KVIGVTGSYGKTSVKFYLQTLLQE------KYNVLVTPESFNTPMGVVRTIRGSLRSTHE 236

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +      + A   G  +   D +    G  T++G  H++     +   N K  L  
Sbjct: 237 IFICE------MGARHVGDIKEICDIVHPDYGIITSIGPQHLETFFNMENIKNTKFEL-A 289

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
           + LP +    +  D+ Y   +  +A +   +V       G       +       + T++
Sbjct: 290 DALPDDGILFLNGDNEY---IQDKAKDYKNKVFYFAQGSGNGYCASDIAVSQLGTEFTMT 346

Query: 295 V-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G   +F   L G   V N   A      +GI  + +   + ++  VP R +      
Sbjct: 347 APDGTTENFQMRLIGAHNVINVAGAIAAANTLGIPLSDLKIPVRRIQPVPHRMQM---RE 403

Query: 354 RGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDL 409
            G    +D A+ SN +          +  G  I++        D+++      G  A D 
Sbjct: 404 HGQVTIIDDAYNSNPVGSKAAVETLAMFDGIRILITPGMVELGDKEKEYNYKFGTYAADC 463

Query: 410 ADIAIV 415
            D  ++
Sbjct: 464 CDYILL 469


>gi|116747993|ref|YP_844680.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697057|gb|ABK16245.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 477

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 132/379 (34%), Gaps = 35/379 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A      H   ++A  GT GKS+ +S +  +  R GL          + +F ++   
Sbjct: 100 QAIAEFFLCAHKSMVVA--GTHGKSTTSSLLSWVLSRGGLDPSVF-----VGAFIKN--- 149

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   + +   ++  +G  + +          H         G  T++  DH D    
Sbjct: 150 -WNSSYRIGRG-PFMVIEGDEYDTAFFDKGPKFLHY----SPWIGIVTSVEFDHADIFTD 203

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +A   A  R F  L+  +   I+ ADDA    + K +     RV + G+  +    + V
Sbjct: 204 FEAVRRA-FRSFARLIQPDGHLILNADDANCLALAKESRG---RVTTYGWS-RTADWRIV 258

Query: 283 CAIHNKQQVTISVEG----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             IH   ++  + E          L  +PG   V N++         G+D   V + L  
Sbjct: 259 DMIHTDGRIRFTYENPLSRGTESILTRMPGRHNVSNSMAVMAAASLAGLDRNAVQDGLLT 318

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQG 397
              V  R + +G    G  +  D+AH   ++   ++ ++     R I   F    +  + 
Sbjct: 319 FEGVKRRQDILGEIG-GILVMDDFAHHPTAVRETIQALKDFYPRRRIFCAFEPRTNSSRR 377

Query: 398 KRPIMGK-IALDLADIAIV-----TDDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEAI 449
                    A D A    +      D  PR E  D +K+ A+I           +  + I
Sbjct: 378 SVFQQAYTTAFDDAFCICIKHPPGMDAIPREERLDVQKLVADIAERGKECHGFASAEDLI 437

Query: 450 RTAIEMLNKQDVLVVAGKG 468
              ++     D++V    G
Sbjct: 438 GFLVDHCASGDLVVCMSNG 456


>gi|86147593|ref|ZP_01065903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
 gi|85834632|gb|EAQ52780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
          Length = 452

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 126/363 (34%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G +   +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P         +D   ++V+ R         S G QG +   K V       Q  
Sbjct: 207 LV-RTVPGNGRIFSPKEDTAIQDVLSR--GCWSETESSGEQGDWDAKKLVKD---GSQFG 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L G+  V NAL+A      +G+   L  E L K      R EF G 
Sbjct: 261 VYFQGECVGTVDWNLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRRLEFKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
            + G  +Y D+AH   ++E+ L  +R  + + +II V         +G        +L  
Sbjct: 321 VA-GVSVYDDFAHHPTAIELTLSGLRNKVDTKKIIAVLEPRSATMKRGVHKETLADSLKQ 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     ++           + ++A +   +      D ++V 
Sbjct: 380 ADSTYLFQ-------PDNIDWSVQDVADACHQPAHVSDNMDAFVAKIVSEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|298531031|ref|ZP_07018432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509054|gb|EFI32959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 433

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 150/432 (34%), Gaps = 72/432 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ +VVS   SL        +   ++            AS       E ++AVTGT+G
Sbjct: 73  QGADLVVVSPGISLAMVRGLCPAGQTVISE-------LELASWFI---SEPVIAVTGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +Q++ +++G   F  G   T  S                     LS +    +
Sbjct: 123 KTTTCMLIQKVLEKAGRRVFTGGNIGTPLS------------------DHVLSGKRADIL 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L      G     G   N   +H+D+H+++  YF AKM+LF    P +  A+
Sbjct: 165 VLEVSSFQL--QGCSGFTPHVGVLLNFSANHLDHHESEDEYFRAKMQLFARQGPMD-LAV 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D                           +  +       K  +T       F     
Sbjct: 222 LPLD---------------------------LRARVESDFRIKSNITYFAPTGRFHCP-G 253

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG     N   A   C  + +   +  + L +    P R E V    +G R   D   T
Sbjct: 254 LPGAHNQANMEAAMLACGFVDVSRNIFDQALLEFVPPPHRQE-VFLQDKGVRYINDSKAT 312

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +  LE +   ++   S     +   G  +      + G +    A + +  D     ED 
Sbjct: 313 T--LEAMTAALKAFDSPIR--LLAGGRYKGGDFSLLAGTLQEKAAKVYLFGDSREIFEDA 368

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            K  A++ H         +  +A   A++     D ++++  G  +  +  N +++    
Sbjct: 369 WKNSADMEHF-------ADLEQAAARAVQEAGPGDNVLLS-PGTSSFDLFNNYQERGEAF 420

Query: 486 CDIIREILGLIL 497
              +R+  G+ L
Sbjct: 421 KVAVRKATGITL 432


>gi|78187951|ref|YP_375994.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
 gi|109892718|sp|Q3B130|MURC_PELLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78167853|gb|ABB24951.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 473

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 151/428 (35%), Gaps = 57/428 (13%)

Query: 65  AQGAEA----IVVSSAYSLQ---DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
             G  A    +V SSA       + S  ++S  P++  D   + L        G      
Sbjct: 59  EAGQVADCDVVVYSSAVRPDANVEISEALKSGIPVVKRD---EMLGELMRYKSG------ 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT GK++  + +  +   SG S     PT  I   +   +             S +
Sbjct: 110 ICVAGTHGKTTTTAMIATMLIESGES-----PTVMIGGVSDYLKG------------STV 152

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  ++ +EA        RL           +L  +H+D + T      + +  F   
Sbjct: 153 VGEG-RYMVIEADEFDRAFLRL---TPTIAVLNSLESEHMDTYGTLDELKRSFIE-FANK 207

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           +P     I   D    + ++   +    R+ +VG +    +    +   H +   TI+  
Sbjct: 208 VPFYGRVICSVDWPEIRRIIGSLNR---RLTTVGIEEPADVTAGDIVMDHGRATFTITAF 264

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G D+      +PG   + NAL A    + +GI+   ++  L +   +  RF+    +SRG
Sbjct: 265 GTDYPGVCLNVPGRHNILNALSAFATGLELGIEPERLIAGLGRYSGMRRRFQVKFRDSRG 324

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH  + ++  +K  R+     R+I VF         +       AL  AD   
Sbjct: 325 LMVIDDYAHHPSEVKATVKAARSGWPDARVIAVFQPHLFSRTLEFADEYGWALSRADGVY 384

Query: 415 VTDDNPRSEDPEK-------IRAEII--HGIPGFIEKGNRIEAIRTAI-EMLNK---QDV 461
           V    P  E  E        + AE +   G        +R E +   + E         +
Sbjct: 385 VAAVYPSREKQEDFPGVDGALVAEAVRRAGGRQVAFVPDRDELLAAVLNEGAEPAPGGTI 444

Query: 462 LVVAGKGH 469
           L+  G G 
Sbjct: 445 LLFMGAGD 452


>gi|302380068|ref|ZP_07268545.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312141|gb|EFK94145.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 461

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 129/404 (31%), Gaps = 37/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV + A    +          + VV     FL               + V+G+ GKS+  
Sbjct: 74  IVYTDAILDDNEELIAARELGVDVVSRG-VFLGALMRNYKYS-----IGVSGSHGKSTTT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + +I   + +    +          Q N     S   L +A  Y ++    + S+   
Sbjct: 128 SMIAKILIDARVDPSIL--LGGKLDEIQGNVHCGNSEYMLTEACEYKANILNYYPSM--- 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                               N+  DH+D+++         +   + L  + S AII  DD
Sbjct: 183 ----------------AIILNIDEDHLDFYKDLNHIVATFIGYMKNL-DENSKAIINIDD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPG 308
              + ++               +  +         +      +S E   KD +F   + G
Sbjct: 226 KNCEPLLSHIKGEIITFGIENEKADYNVHDITFNENGNPSFVVSSEKFDKDEEFSLSIIG 285

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              +Y+A+ A   C    ID   + +++++ H +  R E +G   +G  +  DY H    
Sbjct: 286 RHNIYDAVAAIIACYEFHIDIDTIRKNMKEYHNLHRRMETIGF-YKGCEVKTDYGHHPTE 344

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-- 426
           ++  LK +     G+   VF                 +    D  IVT+     E  +  
Sbjct: 345 IKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDDFANSFYDCDEVIVTEIYAAREKFDSS 404

Query: 427 ----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  +++             EA       + + D+++  G
Sbjct: 405 IHSTDLVEKLVKNGVNAKYYKTFEEARDYIRSKVCENDMVLTTG 448


>gi|292490625|ref|YP_003526064.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291579220|gb|ADE13677.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
          Length = 476

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 92/431 (21%), Positives = 158/431 (36%), Gaps = 54/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   PQ I  G + +VVSSA S  +   +      I VV    + L+      YG    
Sbjct: 67  GHD--PQHIE-GCDVVVVSSAVSEDNPEVSAARRRLIPVVPRA-EMLAELMRFRYG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S +  I    G     +     ++S   + RL +         ++
Sbjct: 119 --IAVAGTHGKTTTTSLIAGILGEGGFDPTFV-IGGRVNSIGANGRLGSGE-----YLVA 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+  +        A    F 
Sbjct: 171 EADESDASFL---------------HLQPLLAVVTNVDADHMGTYGGDFTALKAAFLEFL 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  +D   +E++    + G  VL+ G  +     L+++  +  + Q  ++
Sbjct: 216 HHLPFYGLAVVCLNDPVLRELL---PDIGRPVLTYGTCEDADYRLRELKHVQGRTQFRVA 272

Query: 295 VEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349
             G D     +  LPG     NAL A  +   +G + A +   LE    +  RF+    +
Sbjct: 273 RPGNDNWLTVVLNLPGAHNALNALAAMVVAHELGAEDAAIQRALEGFSGIGRRFQCYGEI 332

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALD 408
            T      +  DY H    L   L+ +     G R++VVF                 AL 
Sbjct: 333 ATPRGRVLLVDDYGHHPRELTATLEALHAGWPGRRVVVVFQPHRYTRTRDLFEDFIEALS 392

Query: 409 LADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           LAD+ ++ +  P  E+P          + IRA   +G    I   +        + +L +
Sbjct: 393 LADVLLLLEVYPAGEEPIAGADSRTLGQAIRA---NGHVDPIGVEDMETIEEVLLGVLQE 449

Query: 459 QDVLVVAGKGH 469
            DVL+  G G 
Sbjct: 450 GDVLLTLGAGD 460


>gi|91216028|ref|ZP_01252997.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186005|gb|EAS72379.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 447

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 136/368 (36%), Gaps = 50/368 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS   G    NI+ +TG++GK++V + V  I + +GLS    G               
Sbjct: 94  EFASWFTG---ANIIGITGSNGKTTVTNMVYHILKNAGLSVSMAGNVG------------ 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQT 222
                        ++ Q   +  +E SS  LD   ++  +      T++  DH+D YH  
Sbjct: 139 -------FSFAEQVARQSFHNYVLELSSFQLD--GVEDFRPHIAILTSITPDHLDRYHDN 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKF 276
            Q Y  AK ++ +    K+   I   DD      +++ +    +++             F
Sbjct: 190 FQEYIQAKFKITKNQT-KDDFLIYNKDDKVIVNWLEK-NTVKAQLIPFTNTTIMTDLSAF 247

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I   K+    N    T+SV          + G+    NA+ A+     + I    + E +
Sbjct: 248 IENNKINIKLNHNLFTMSVND------LSVKGDHNTRNAMAASTAARLLKIRKQTIRESM 301

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E    V  R E +G  ++   I    A   N        + ++T+  + +V   G D+  
Sbjct: 302 ESFQGVEHRLEQLGKINKVAFINDSKATNIN---ATFYALDSMTAPTVWIV--GGVDKGN 356

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               ++  +   +  I  +  DN      +KI     + +   IE  N  +A+  A  + 
Sbjct: 357 VYEDLLPLVNEKVKAIVCLGIDN------QKIYNSFSNCVDTIIESSNMTDAVAKAYGLT 410

Query: 457 NKQDVLVV 464
              D +++
Sbjct: 411 EDNDAVLL 418


>gi|312866147|ref|ZP_07726368.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
 gi|311098551|gb|EFQ56774.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
          Length = 451

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 148/416 (35%), Gaps = 55/416 (13%)

Query: 61  PQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
            QA+  +G + I       L D    +    P +  DN   ++ L            A R
Sbjct: 49  AQALLEEGIKVICGHHPLELLDEDFAVMIKNPGIRYDNPMVKRALEKGIPVYTEVELAYR 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + +  +    G S+   G    I   A +  +T     
Sbjct: 109 ISESP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSG---NIGFPASEVAMTATDQD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     G                 ++         TNL   HIDYH T + Y  
Sbjct: 163 TLVMELSSFQLMG-----------------VETFHPHMAVITNLMPTHIDYHGTFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  L +++   +   + +  D  +K++  +         S   +    +LK+       
Sbjct: 206 AKWHLQDQMTAGDYLILNFNQD-LAKDLATKTQATVVP-FSTQEEVDGAYLKEGYLYFKG 263

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +QV  +           +PG   V NAL    +    GI + ++ E L     V  R + 
Sbjct: 264 EQVMAA-------DSIGVPGSHNVENALATIAVAKLSGIANEVIAETLASFGGVKHRLQS 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +G   +G   Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 LG-QVQGVAFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDIKG- 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L  + I+    PR +     RA    G+P +++  +  EA   A E     DV+++
Sbjct: 372 LKKMVILGQSAPRLK-----RAADKAGVP-YLDAKDVKEATWIAFEEAASGDVVLL 421


>gi|256832307|ref|YP_003161034.1| UDP-N-acetylmuramate/alanine ligase [Jonesia denitrificans DSM
           20603]
 gi|256685838|gb|ACV08731.1| UDP-N-acetylmuramate/alanine ligase [Jonesia denitrificans DSM
           20603]
          Length = 492

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 146/428 (34%), Gaps = 56/428 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVSSA    D    +R+    L V +  + L++  +   G      +AV G  GK++ +
Sbjct: 74  VVVSSAIR-DDNVELVRAREMGLTVLHRSQALAMLMNDHDG------IAVAGAHGKTTTS 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +    Q  G+          + S  +      P               G   ++    
Sbjct: 127 GMIAVAAQALGMDPSFA-----VGSTMRTPNGAIPGGHL---------GHGKILIAEADE 172

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S G   +     +      TN+  DH+D++ ++ A++ A     ++++P     I  ADD
Sbjct: 173 SDGSFLNY----RPTISVVTNIEPDHLDHYGSEDAFYRAFDEFADQVVPH-GWLIACADD 227

Query: 251 AYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNK--QQVTISVEGK--------- 298
           A +  +  R    G +VL+ G +    I + +    H    Q +T++V            
Sbjct: 228 AGAYALAHRQEQHGRQVLTYGRHPSADIRVLESHPQHPGISQVMTVTVPRNLPRTGTRNT 287

Query: 299 --------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                          +PGE    NA  A    + +G         L        RFE   
Sbjct: 288 TNPENATTTLTIQLAVPGEHNALNAAAALATVMVLGASPQEAAHALSAFMGTGRRFELRA 347

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  +  DYAH    +   L     +   GR++ +F                 AL  
Sbjct: 348 VVGDVTVV-DDYAHHPTEVAAFLSAASNVAGTGRVLALFQPHLYSRTRTFANEFATALQG 406

Query: 410 ADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AD+AIVTD     E P        I   +      +I  G+RI+A +    +    D++ 
Sbjct: 407 ADVAIVTDIYGAREQPAAGVTSQLITDNLAPQQGAYI--GDRIQAAKHLARIAQPGDLIA 464

Query: 464 VAGKGHET 471
             G G  T
Sbjct: 465 TIGAGDVT 472


>gi|71903854|ref|YP_280657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS6180]
 gi|209559688|ref|YP_002286160.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes NZ131]
 gi|122063268|sp|Q48SK8|MURD_STRPM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226722949|sp|B5XMA3|MURD_STRPZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71802949|gb|AAX72302.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS6180]
 gi|209540889|gb|ACI61465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes NZ131]
          Length = 452

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D         P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDEDFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 108 FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 152

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 153 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +LK     
Sbjct: 205 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTKATVIPFSTQKVVDGAYLKDGILY 260

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 261 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 314 LQRVG-QIKDITFYNDSKSTN--ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 369

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 370 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|325856508|ref|ZP_08172197.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|327313073|ref|YP_004328510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
 gi|325483477|gb|EGC86450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|326944914|gb|AEA20799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
          Length = 443

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 128/363 (35%), Gaps = 42/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I   +G  +   G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFTNAGYDAGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 --------SLALQVAEDPHEYYIIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDYK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y +AKMR+ +    ++S      D    KE+ K   +A C   S   +   I   + 
Sbjct: 190 FENYADAKMRIIQNQTAEDSFIYWNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEE 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                ++    ++E +D      L G   +YN+L A       GI    + + L     V
Sbjct: 250 GQYKIEKPEPFNMEQED----LSLTGRHNIYNSLAAGIASDISGIKKENIRKSLGDFPGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V   +    I    A   ++    L+++RT T     ++   G D+      I 
Sbjct: 306 EHRLEKVCKVAGVQYINDSKATNVDACWYALESMRTPT-----ILILGGKDKGNDYNAIK 360

Query: 403 GKIALDLADIAIVTDDNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             +      I  +  DN +  E+ + +      GIP   +  +  + +    EM    D 
Sbjct: 361 DLVKEKCTGIVYLGADNRKLHENFDGL------GIP-VRDTHSMKDCVAACTEMAKPGDT 413

Query: 462 LVV 464
           +++
Sbjct: 414 VLL 416


>gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565]
 gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565]
          Length = 852

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 142/438 (32%), Gaps = 51/438 (11%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   E  I+ + +DSR +      +F A+   +  G  +IP+   +G 
Sbjct: 5   IESIAQSIGARRVGEYEVTIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGV 64

Query: 69  EAIVVSSAY-------------SLQDFSATI-----------RSNTPILVVDNTRKFLSL 104
              V+S                ++QD  A              S    L+V N  K L  
Sbjct: 65  RNFVISEEEFKQVENGELRIESAMQDDDAQPILNSQLSTLNFPSTLNFLIVPNPLKALQK 124

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A     +    ++ +TG++GK+ V  ++ Q+                 S  + ++++  
Sbjct: 125 LAEVHRERFNIPVIGITGSNGKTIVKEWLHQLLS--------PDRCIVRSPRSYNSQIGV 176

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P  ++    LS  +  G+    +          R+  IK   G  TN+G  H +   + Q
Sbjct: 177 PLSVW---QLSEEAELGIFEAGISEMGEMGALKRM--IKPSIGILTNIGGAHQENFFSLQ 231

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                K+ LF++        I   D+   S  V K    A     S     + +++  V 
Sbjct: 232 EKCMEKLTLFKDC----DVVIYDGDNELISNCVAKSMLTAREIAWSRTDIERPLYISCVT 287

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              +   +       D  F  P   +  + N L     C+ +   +  + E + +L  + 
Sbjct: 288 KKEDHTVIAYRYLNMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIA 347

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN--IRTITSGRIIV-----VFGCGGDRDQ 396
            R E     +    I   Y     SL++ L     R+   G         +   G     
Sbjct: 348 MRLEVKEGKNNCLLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTAT 407

Query: 397 GKRPIMGKIALDLADIAI 414
             R +   +     D  I
Sbjct: 408 LYRRVAQLVQSRGIDKLI 425


>gi|237807298|ref|YP_002891738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
 gi|237499559|gb|ACQ92152.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
          Length = 430

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 129/400 (32%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV S   +L   +        + +V +   F               ++A+TG++GKS
Sbjct: 61  ASLIVASPGIALATPALQAAQMAGVEIVGDIELFAREA--------KAPVVAITGSNGKS 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V  + +++G      G   T +                      L  Q      +
Sbjct: 113 TVTTLVGLMAEQAGFKVGIGGNIGTPA--------------------LDLLLQPADLYVL 152

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A    NL  DH+D +     Y  AK R+F          ++ 
Sbjct: 153 ELSSFQLE--TTSSLQPAAAVILNLSEDHLDRYDGMAGYLAAKQRIFAN----AKHIVVN 206

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFP 305
            DDA                 S G   +         +     + +SV+GK         
Sbjct: 207 RDDA------ATLPPQHAYWQSFGLNSESYG-----RVQQDDGLWLSVDGKPVLSVAELN 255

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G     NAL A  L  A+GI  A  L  L     +  R +FV   +    I    A  
Sbjct: 256 IVGAHNQMNALAAMALADAVGIPQAAQLTVLRSFTGLSHRCQFVRDVNGVRWINDSKATN 315

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S    +  +     GR+ +    G  + Q   P+   +A  +  +     D       
Sbjct: 316 VGSTLAAVAGVGESVQGRLWL-LAGGQGKGQDFSPLQPLLANQIYRMVCFGQD------- 367

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I  E+           +  EA+R+    +   D +++A
Sbjct: 368 AGILMELA---DNTQRVADLDEAVRSVAAEVQPGDWVLLA 404


>gi|114566875|ref|YP_754029.1| cyanophycin synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337810|gb|ABI68658.1| UDP-N-acetylmuramyl tripeptide synthase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 887

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 145/368 (39%), Gaps = 29/368 (7%)

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++VA  ++ +   +G     +G T +  ++     +          A S L ++
Sbjct: 486 TGTNGKTTVARLIRHVLSLAGQK---VGMTCSSGTYIGKECIAEGDNTGPLSAHSILYNR 542

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELL 238
            V    +E +  G+ +  L       G  TN+  DH+  D   T +     K  + E + 
Sbjct: 543 DVEVAVLETARGGIIRRGLGYDLADVGVITNISGDHLGMDDINTLEDMAFVKSLVVEAIK 602

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISV 295
           P    A++ ADD  ++ ++++A +    + S+       +    +   A+  ++ + +  
Sbjct: 603 P-NGYAVLNADDGMTEHIVRKA-SCNPVLFSLNRDNMLVEDHIKQDGMAVVIEEDLIVIY 660

Query: 296 EGK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL--HVVPG 344
           + K         +    F       + N+L A     A G+   ++   L          
Sbjct: 661 QNKIRDEIMTINEIPITFNGKAICNIENSLAAVASLSAFGLAKNVIRLGLMSFTSDPTAN 720

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
              F   +    R+ +DY H  ++ + +++ I  + + R++ + G  GDR       +G+
Sbjct: 721 EGRFNLFDMGSFRVLLDYGHNYSAYQSVMQFINNMNAARLVGIIGVPGDRLDKTIFDIGQ 780

Query: 405 IALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKGNRI------EAIRTAIEML 456
           I+        + +D + R     ++   + +G + G  ++ N        +A+  AI   
Sbjct: 781 ISGQAFSKIYIKEDEDLRGRSAGEVAGILYNGAVSGGADRENMEIVLSETDALNAAINNA 840

Query: 457 NKQDVLVV 464
              D++V+
Sbjct: 841 FTGDLIVM 848


>gi|209525717|ref|ZP_03274254.1| UDP-N-acetylmuramate/alanine ligase [Arthrospira maxima CS-328]
 gi|209493886|gb|EDZ94204.1| UDP-N-acetylmuramate/alanine ligase [Arthrospira maxima CS-328]
          Length = 528

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 147/432 (34%), Gaps = 73/432 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S+A   ++    +       +   +    +L A           +AV GT GK++ +
Sbjct: 111 VICSTAIHPENPEYQVARELGCPIFHRSDLLAALMAEY-------QSIAVAGTHGKTTTS 163

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +  ++GL      PT  +                     ++  +  V H     +
Sbjct: 164 SLIAFLLLKAGLD-----PTILVGGEVN----------------AWEGNARVGHSPYLVA 202

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                   L  +    G  TN+  DH D+++T     +   R+F     +    +   D 
Sbjct: 203 EADESDGSLVKLASHIGVVTNIELDHPDHYKTLDQLIST-FRIFAN---QCETIVGCIDC 258

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKDFDFL-FPL 306
              ++ +K         +S     +F     V A+          +   G+    L   L
Sbjct: 259 TMVRDYLK-------PTISYSINSQFNADYTVDAVQYLADGIMAQVYERGEAIGLLKLQL 311

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NAL    +   + ++ +++ + + +      RFE+ G N  G +   DYAH  
Sbjct: 312 LGAHNLSNALATVAVGRLLNLEFSVIAQAIAQFPGTKRRFEYRG-NYGGIQFVDDYAHHP 370

Query: 367 NSLEMILKNIR-------------------TITSG----RIIVVFGCGGDRDQGKRPIMG 403
           + + + L   R                    +  G    R++ +F               
Sbjct: 371 SEIRVTLAAARGRLQNSSGLSSTLSEAAITPVHPGSEIKRVVAIFQPHRYSRTETLMEDF 430

Query: 404 KIALDLADIAIVTDDNPRSE-DPEKIR-AEIIHGIPGFIEKGN---RIEAIRT-AIEMLN 457
            +    AD+ ++T+     E +P +I   ++   +       +    +EA++T   ++L 
Sbjct: 431 ALCFGDADLVMLTEIYSAGEANPGRISGQQLATRVAEHHPHVDYQSSLEAVKTRLCQLLK 490

Query: 458 KQDVLVVAGKGH 469
             D+++  G G+
Sbjct: 491 PGDLVLFLGAGN 502


>gi|218247349|ref|YP_002372720.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8801]
 gi|218167827|gb|ACK66564.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8801]
          Length = 494

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 138/430 (32%), Gaps = 59/430 (13%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +    ++ A      PI    +    L               +AV GT GK++
Sbjct: 105 VICSTAIAKNNSEYQAAQEKGCPIFHRSDVLAALI---------SDYQSIAVAGTHGKTT 155

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S V  +  ++GL    I                    +   +  ++L S        +
Sbjct: 156 TSSLVGYVLLKAGLDPTII----------------VGGEVDAWEGNAHLGSSKYLVAEAD 199

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++++ +       ++FE    +    +   
Sbjct: 200 ESDGSLVKH-----SPTIGVVTNIELDHPDHYESLEQVVRT-FQIFE---TQCEILVGCI 250

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           D    +  +          ++            +K +          +   G+       
Sbjct: 251 DCETVRSQLN-------PTITYSLDPTKNADYTVKNLTYDAQGTIAEVWERGRFLGQMRL 303

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PGE  V NAL A  +   +G+D  ++ + L        RFE  G  S G     DYAH
Sbjct: 304 TIPGEHNVSNALAAVAVGRKLGLDFQVIADALATFGGAKRRFEHRG-YSNGITFIDDYAH 362

Query: 365 TSNSLEMILKNIRTITSGR----IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             + ++  L   R+         ++ +F                 A   AD+ I++D   
Sbjct: 363 HPSEIQATLSAARSKVDQNGSSRVVAIFQPHRYSRTATFLADFAQAFQAADLVILSDIYS 422

Query: 421 RSE-DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-----EMLNKQDVLVVAGKGHETVHI 474
             E +   I  + +             E    A+     ++L   D+ +  G G+    I
Sbjct: 423 AGEVNIHNITGQDLANAVKVHHSQVIYEPCLKALTESLPQLLQPGDLALFLGAGN-LNQI 481

Query: 475 VTNGEKKMSV 484
           +     +  V
Sbjct: 482 IPQVIARYDV 491


>gi|289554061|ref|ZP_06443271.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
 gi|289438693|gb|EFD21186.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
          Length = 438

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 143/437 (32%), Gaps = 73/437 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVT 121
           GA A+V + A         I    P LV    R        ++ A  + G+     L VT
Sbjct: 17  GATAVVTTHA--------AIPKTNPELVEARRRGIPVVLRPAVLAKLMAGR---TTLMVT 65

Query: 122 GTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++  S +    Q  G   SF +G    +     +    +                
Sbjct: 66  GTHGKTTTTSMLIVALQHCGLDPSFAVG--GELGEAGTNAHHGSGD-------------- 109

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  + S   L Q+            TN+  DH+D++ + +AY  A    F E +  
Sbjct: 110 -CFVAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVP 162

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQV-------- 291
               ++  DD     + +RA   G RVL  G   G+ +    V                 
Sbjct: 163 GGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLAS 222

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++           +PG     NAL A    + IG  +  VL+ L     V  RFE VGT
Sbjct: 223 ELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGT 282

Query: 352 NSRG---GRIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGK 404
              G    R++ DYAH    +   L   R +      GR +VVF                
Sbjct: 283 CGVGKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFG 342

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IE 454
            AL+ AD   V D     E P       + G+ G     +    +R              
Sbjct: 343 RALNAADEVFVLDVYGAREQP-------LAGVSGASVAEHVTVPMRYVPDFSAVAQQVAA 395

Query: 455 MLNKQDVLVVAGKGHET 471
             +  DV+V  G G  T
Sbjct: 396 AASPGDVIVTMGAGDVT 412


>gi|229198024|ref|ZP_04324738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
 gi|228585503|gb|EEK43607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
          Length = 450

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKGEKVVEVGD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSISKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|15675424|ref|NP_269598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes M1 GAS]
 gi|71911066|ref|YP_282616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS5005]
 gi|81174547|sp|P0C0D8|MURD_STRP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13622612|gb|AAK34319.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71853848|gb|AAZ51871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS5005]
          Length = 452

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 152/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 108 FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 152

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 153 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +LK     
Sbjct: 205 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTKATVIPFSTQKVVDGAYLKDGILY 260

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 261 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 314 LQRVG-QIKDITFYNDSKSTN--ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 369

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 370 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 836

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 156/451 (34%), Gaps = 42/451 (9%)

Query: 30  INEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           I  +S DSR I     +FVA+ G   DGH F+ +A   GA+  +V   +           
Sbjct: 25  IKHISIDSRRIFSPSTLFVALKGQAHDGHAFVAEAAKSGAKYALVHQDWQ----PPYPLK 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  +L V++  K     A     +  +  ++A+ G+ GK+ +   ++ +  +        
Sbjct: 81  DIILLRVNDPLKAFQALAKAYRQERTQCKVVAIGGSYGKTMLKDLLETMLAKRYKVMA-- 138

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 S  + ++++  P  ++  K    ++           S  G  +   D I     
Sbjct: 139 ------SPESFNSQIGVPLSLFKIKDSHEIALVEAAF-----SEPGEMEVLADIIMPEHV 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++G  H+    + +      ++L  + L K++ A+I +   +   + +R   + C  
Sbjct: 188 ILTSIGAKHLHTLGSLETTALEMVKLL-QPLKKDNWALIPSTPLFGPHLQER--TSRCLF 244

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL--CIAI 325
            +         +            ++    + + F   +   F     L+          
Sbjct: 245 WTQPDSRLPHAISASTTPQMTLPYSVHFPDQ-YLFQGEMTKGFSYSLDLINTACKSAWLF 303

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            + S  + E L+     P R E     +    I   Y+    S++  L  ++ + S    
Sbjct: 304 DLPSHTISEVLQTYQFEPMRTEIWKAPTGMLFINDPYSSDPQSMDQALTRLQYLASNEKK 363

Query: 386 VVFGCG-----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            +   G       R+   R I   IA       ++    P S D + + ++++       
Sbjct: 364 TLIFGGLKGISDQRENEYRRIGLAIAQSHIQHLMLIG--PLS-DFQSLVSKLLPHTTISF 420

Query: 441 EKGNRIEAIRTAIEMLNK-QD---VLVVAGK 467
                   I  A+  L + +D   V+++ G 
Sbjct: 421 YPT-----IAHALRHLREVEDPRQVVLIKGA 446


>gi|17986860|ref|NP_539494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. 16M]
 gi|256045063|ref|ZP_05447964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|260565338|ref|ZP_05835822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|265991490|ref|ZP_06104047.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|30316086|sp|Q8YI68|MURD_BRUME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|17982497|gb|AAL51758.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|260151406|gb|EEW86500.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|263002274|gb|EEZ14849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 467

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
              V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AVFVLSPGVPLTHPQ-------PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + +G      G   T                     L+     
Sbjct: 120 TGTNGKSTTTALIAHIIKATGRDMQLGGNIGT-------------------AILTLELPC 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ADRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              AII  DDAY + +  R H AG RV+ +  +      +      +   Q   I  E  
Sbjct: 215 SGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEID-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C++ G+    +   L+    +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +V+ +  +N+ E     + +       +V
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWIV 359


>gi|309799972|ref|ZP_07694172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
 gi|308116371|gb|EFO53847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
          Length = 450

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 140/380 (36%), Gaps = 45/380 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G +    G    I   A     T      L   L
Sbjct: 112 APIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSG---NIGYPASQVAQTATDKDTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                           TNL   HIDYH + +AY  AK  + 
Sbjct: 169 SSFQLMGIQEF-----------------HPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQ 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +   +   ++  +   +KE+  + +       +         L+KV   + +  + + 
Sbjct: 212 SNMTAAD-YLVLNFNQELAKELATKTNATVVPFST---------LEKVDGAYLEDGL-LY 260

Query: 295 VEGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G+         +PG   V NAL    +    G+D+ ++ E L     V  R +FV   
Sbjct: 261 FRGEKVMAADEIGVPGSHNVENALATIAVAKLRGVDNEIIKETLSAFGGVKHRLQFVD-Q 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G + Y D   T+  +    K +        +++   G DR      ++  I   L  +
Sbjct: 320 INGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TGLKKM 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            I+       +  E+++         +++  +  +A R A E+  + DV++++   + + 
Sbjct: 376 VIL------GQSAERVKRAADKAGVAYVDATDIADATRKAYELAEEGDVVLLS-PANASW 428

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            +  N E +  +  D + E+
Sbjct: 429 DMYANFEVRGDLFIDTVAEL 448


>gi|297569886|ref|YP_003691230.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
 gi|296925801|gb|ADH86611.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
          Length = 502

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 131/370 (35%), Gaps = 38/370 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L V GT GK++ +S +  +   +GL    +     I      +  T   P ++++  
Sbjct: 133 RRSLVVAGTHGKTTTSSLLATMLDHAGLDPGFM--IGGIVQAFGRSSRTGGGPFFVSEGD 190

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++                              T +  DH D +    A   A  RL 
Sbjct: 191 EYDTAFFDKGPKFLHY------------APEVCILTGVEFDHADIYADLAAVKTAFARLV 238

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   + + DD   +E++  A            +G    L K+         T+ 
Sbjct: 239 A-LMPPQGRLVAFVDDPVVRELVAVAPCPVLGYGEGAGEGADWRLDKLTVSPGGTGFTVL 297

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+ F +F  P+PG     NAL    +   +G+  A +   L     V  R E  G   
Sbjct: 298 RQGELFGEFFSPMPGRHNALNALAVIAVLDHLGVPPAEIAAGLAAFTGVRRRQEVRGEVG 357

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIA-LDLAD 411
            G  +  D+AH   ++   L  ++    G R++ VF    +  + +      ++    AD
Sbjct: 358 -GVTVIDDFAHHPTAVRETLAALKAAYPGRRLVAVFEPRTNSSRRRVFQEAYVSVFAAAD 416

Query: 412 IAIVTDDN-----PRSE--DPEKIRAEI-IHGIPGFIEKGNRIEA-IRTAIEML----NK 458
             ++ +       P  E    +++ A++   G+P       R  A ++  I+ L      
Sbjct: 417 RVLIREPEGLEAIPVDERFSVQRLAADLTAAGLPA------RAFAEVQEIIDQLAVDSRP 470

Query: 459 QDVLVVAGKG 468
            DV+ +   G
Sbjct: 471 GDVVAILSNG 480


>gi|146318130|ref|YP_001197842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 05ZYH33]
 gi|158514131|sp|A4VTK3|MURD_STRSY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145688936|gb|ABP89442.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           05ZYH33]
          Length = 449

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               +  G   I  S    L D    +    P +  DN    K +            A  
Sbjct: 49  AQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGIPVWTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G    ++     I   A     T  +  
Sbjct: 109 VSDVP---IVGITGSNGKTTTTTMIAEVLN-AGKKPAKL--CGNIGYPASSVAQTATAED 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     G                  +         TNL   HIDYH T + Y  
Sbjct: 163 TLVMELSSFQLMG-----------------TESFHPHIAVVTNLIASHIDYHGTFEDYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +  ++  ++   +I  +   +KE+  +         +          ++V      
Sbjct: 206 AKWMIQRQMTAED-FVVINFNQKEAKELAGQTKATVVPFST----------QEVVDGAYL 254

Query: 289 QQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +  +G+         +PG   V NAL    +   +G+D   + E L     V  R 
Sbjct: 255 ADGKLYFKGEYIMDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAFGGVKHRL 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +FVG    G   Y D   T+  +    K +        +++   G DR      ++  + 
Sbjct: 315 QFVG-EINGVSFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLV 370

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+    PR +     +AE+       IE  +  +A R A  +  K D++++
Sbjct: 371 G-LKKMVILGQSAPRVQRAAD-KAEVE-----TIEALDIADATRKAFAIAEKGDIVLL 421


>gi|15679903|ref|NP_275877.1| UDP-MurNac-tripeptide synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|7482867|pir||B69198 UDP-N-acetylmuramyl tripeptide synthetase related protein -
           Methanobacterium thermoautotrophicum (strain Delta H)
          Length = 450

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 148/432 (34%), Gaps = 48/432 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117
           I  A  +G  AI+       +          P+++VD      +L  S    +       
Sbjct: 28  IEIASERGVSAIITQ-DLRGKSSRLAEEHGLPVILVDRIENANALALSWTIERFAPSSRR 86

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTGT+GKS+    +  I + +G SS+        ++    +   T     +++ ++  
Sbjct: 87  VVVTGTNGKSTTTHMIHHIIETTGASSY--------TNTDSRSEFNTLIDPVVSQQIAEA 138

Query: 178 SSQGV-THVSVEASSHGLDQHRL---------DGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           SS G    + +E S       R+           I       TN+  DHI   ++ +  F
Sbjct: 139 SSDGAPEFMVIEVSEVQGWLGRVMRDHARMMTAAIGPEVVVITNVAMDHIGLVESVEDVF 198

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                    +  +   A++ ADD   + +     N G  V+  G      +      IH 
Sbjct: 199 REVAGALRAI--ESGVAVLNADDERVRAMAH--VNPGLSVVFYGSDSPVRY--DGEGIHI 252

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              + I  E        P   E  + N L AA  C+ +G     +   ++    +  RF 
Sbjct: 253 GGDLIIPAE------ELPFRSEHFIQNTLAAAAACLELGFSPEDIRMGVKTYRPLKRRFS 306

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            + T      +  D+AH  + +   +++      GR+ VV    G R +    +      
Sbjct: 307 VLMTE---PLVIDDFAHNPSGIRFTVRSAAANLRGRLWVVNAIRGSRGEDINVMNAAALA 363

Query: 408 D-----LADIAIVTDDNPRSEDPEKIRAE-------IIHGIPGFIEKGNRIEAIRTAIEM 455
           D      A++ + +  +   E    +  E       +      +I      +A+R  ++ 
Sbjct: 364 DSLRGLNAELIVTSSSDVVDEQNRVLENERRAFLGVLDERGASYIHVEKLRDALRMVLDA 423

Query: 456 LNKQDVLVVAGK 467
               D +++ G 
Sbjct: 424 AKPHDTILLLGA 435


>gi|169824118|ref|YP_001691729.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
 gi|167830923|dbj|BAG07839.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
          Length = 461

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 128/404 (31%), Gaps = 37/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV + A    +          + VV     FL               + V+G+ GKS+  
Sbjct: 74  IVYTDAILDDNEELIAARELGVDVVSRGV-FLGALMRNYKYS-----IGVSGSHGKSTTT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + +I   + +    +          Q N     S   L +A  Y ++    + S+   
Sbjct: 128 SMIAKILIDAKVDPSIL--LGGKLDEIQGNVHCGNSEYMLTEACEYKANILNYYPSM--- 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                               N+  DH+D+++         +   + L  + S AII  DD
Sbjct: 183 ----------------AIILNIDEDHLDFYKDLNHIVATFIGYMKNL-DENSKAIINIDD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPG 308
              + ++               +  +         +      +S E   KD +F   + G
Sbjct: 226 KNCEPLLSHIKGEIITFGIENEKADYNVHDITFNENGNPSFVVSSEKFDKDEEFSLSIIG 285

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              +Y+A+ A   C    ID   + +++++ H +  R E +G   +G  +  DY H    
Sbjct: 286 RHNIYDAVAAIIACYEFHIDIDTIRKNMKEYHNLHRRMETIGF-YKGCEVKTDYGHHPTE 344

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-- 426
           ++  LK +     G+   VF                 A    D  +VT+     E  +  
Sbjct: 345 IKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDDFANAFYDCDEVVVTEIYAAREKFDSS 404

Query: 427 ----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  +++             EA       +   D+++  G
Sbjct: 405 IHSTDLVEKLVKNGVNAKYYKTFEEARDYIRSKVCDNDLVLTTG 448


>gi|168206840|ref|ZP_02632845.1| Mur ligase family protein [Clostridium perfringens E str. JGS1987]
 gi|170661728|gb|EDT14411.1| Mur ligase family protein [Clostridium perfringens E str. JGS1987]
          Length = 553

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 138/372 (37%), Gaps = 32/372 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GK+S +  + +  +      +  G   T      +  +          A  
Sbjct: 157 PIVSITGTNGKTSTSRLIYKGFENL---EYFSGLAMTGGIIINNEFVKKGDTTGFYSAKK 213

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L++  V    +E +  G+ +  L          T+L  DHI  D  +      + K+  
Sbjct: 214 VLTNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLIT 273

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN----------AGCRVLSVGYQGKFIHLKKVC 283
             E+LP+     I   +    EV++   N             + +  G +  F+  + V 
Sbjct: 274 TREVLPEGKV--IIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVI 331

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-- 341
               K +  IS   KDF F      +  + N LV+      +  +   V+  L+ +    
Sbjct: 332 FFDGKDKNIIS-NIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVNSLKNIECDV 390

Query: 342 --VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR   +   +   +I +DY H   + E +      I   +II +    GDR     
Sbjct: 391 YNNIGRQNIIELEN--FKIILDYGHNPEAFEELFYLANKIKRNKIISIVSSPGDRLDEYI 448

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRT 451
             +G+IA   +D  I+ +  + R  +  +I   I  GI     K        +  EAI+ 
Sbjct: 449 KELGRIAGKNSDTIIIKETFDRRGREELEITNLIKSGINEIENKSVEVLSIIDEEEAIKK 508

Query: 452 AIEMLNKQDVLV 463
           AI M  + D++V
Sbjct: 509 AISMAKEGDIIV 520


>gi|206976740|ref|ZP_03237644.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217961334|ref|YP_002339902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus AH187]
 gi|229140561|ref|ZP_04269116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
 gi|226711882|sp|B7HM33|MURD_BACC7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206745050|gb|EDZ56453.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217063256|gb|ACJ77506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH187]
 gi|228643122|gb|EEK99398.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
          Length = 450

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + PILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGACIKDNALYFKGEKVVEVGD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGVSNKAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T     V+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|312136565|ref|YP_004003902.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224284|gb|ADP77140.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 510

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 146/402 (36%), Gaps = 70/402 (17%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ V GT GK++  + +  + +           ++ + S  QD+ +       +     
Sbjct: 112 PMVGVAGTDGKTTTTNMIYYLLKD--------KYSTLVFSSLQDSLVIEGLAEIVVNQDY 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V  +      HG  +  + G++L  G  TNL  DH+D       Y      L +
Sbjct: 164 KDKEFAVFELP-----HGTIR-MVKGLELSVGVLTNLTPDHLDEFDGYWDYVKRNF-LVK 216

Query: 236 ELLPKESPAIIYADDAYSKEV------------MKRAHNAGCRVLSVGYQGKFIH----- 278
           +L+ K    +  +DD    ++            + +      +     + GK        
Sbjct: 217 DLVHKNGLLVFNSDDPIIYKLKNSVNKEIVFYGLGKPQKIKYKSKVYSFDGKKPKPDVTA 276

Query: 279 ----------------LKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQV 312
                           + ++  +  +    +  +  +F          +    +PG   +
Sbjct: 277 KDIVLEGLDGSKFKAVVNEIPTVICENCGELLCKCGEFKRRYVGPFEKNIKLQIPGIVNI 336

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N+L    + +A+G+    + E LE    + GRFE +G    G +IY+D AH   S+E +
Sbjct: 337 ENSLATITVGLALGLKMKYIKEKLENFKGIKGRFEKIG-EIDGVKIYMDAAHNPESMEKV 395

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---- 428
           + N+     GR+I+            +  +G+I    ADI I +  N   E   +I    
Sbjct: 396 IGNLD--VKGRLIISLDNPDTLTTRDKFRIGRILSKKADILICSAKN---ETTGEIDWNA 450

Query: 429 RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E+  G      I   N  ++I  AIE+  K D+++  G G
Sbjct: 451 AEEVARGAKECKTIITSNVRDSILKAIELSKKGDLILHIGPG 492


>gi|310779640|ref|YP_003967973.1| UDP-N-acetylmuramate--L-alanine ligase [Ilyobacter polytropus DSM
           2926]
 gi|309748963|gb|ADO83625.1| UDP-N-acetylmuramate--L-alanine ligase [Ilyobacter polytropus DSM
           2926]
          Length = 443

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 136/407 (33%), Gaps = 41/407 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G   +V SSA    +          I V+    + L+L  +   G      +AV GT G
Sbjct: 59  KGCSLVVRSSAIKEGNPEYDYAMKNGIEVIKRG-ELLALLMNEEQG------IAVAGTHG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +         +    G    I+S A+                S+L        
Sbjct: 112 KTTTSSMLGAAMLSLDPTIVVGGILPEINSNAKAGSSKLFIAEADESDNSFL-------- 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  DH++ H + +    + +   +     +   I
Sbjct: 164 ---------------YLNPFTSIITNIEADHLENHGSLENIERSFIEFID---KTKDEVI 205

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           +  D    ++V+K       +  S+      I+   +    +K    ++V G++   F+ 
Sbjct: 206 VNIDCENIRKVIK--GKEKIKTYSLKNNNADIYASNIRVEDSKIHYEVTVCGENLGTFVL 263

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PGE  V N+L    L    G++   + + L+       R++ +    +  +I  DYAH
Sbjct: 264 SVPGEHNVSNSLPVIYLAHKYGVEKEEMKKMLKFFKGAKRRYDIL--YDKNVKIIDDYAH 321

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               ++  L+  R+I  G+I+ VF               K   D AD  ++       E 
Sbjct: 322 HPTEIKATLQGARSIEKGKIVAVFQPHRYSRVKFLLEEFKGVFDNADEVLLLPVFSAGEK 381

Query: 425 PE---KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E    I           I      + +   +E      V +  G G
Sbjct: 382 DEFGVGIEKLAEKTGHKNIRVEKNEDNLSVLMEDKENGTVFLFMGAG 428


>gi|146320316|ref|YP_001200027.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 98HAH33]
 gi|253751317|ref|YP_003024458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|253753218|ref|YP_003026358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|253755041|ref|YP_003028181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|158514149|sp|A4VZT8|MURD_STRS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145691122|gb|ABP91627.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           98HAH33]
 gi|251815606|emb|CAZ51192.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|251817505|emb|CAZ55249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|251819463|emb|CAR44977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|292557890|gb|ADE30891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           GZ1]
          Length = 449

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               +  G   I  S    L D    +    P +  DN    K +            A  
Sbjct: 49  AQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGIPVWTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G    ++     I   A     T  +  
Sbjct: 109 VSDVP---IVGITGSNGKTTTTTMIAEVLN-AGKKPAKL--CGNIGYPASSVAQTATAED 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     G                  +         TNL   HIDYH T + Y  
Sbjct: 163 TLVMELSSFQLMG-----------------TESFHPHIAVVTNLIASHIDYHGTFEDYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +  ++  ++   +I  +   +KE+  +         +          ++V      
Sbjct: 206 AKWMIQRQMTAED-FVVINFNQKEAKELAGQTKATVVPFST----------QEVVDGAYL 254

Query: 289 QQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +  +G+         +PG   V NAL    +   +G+D   + E L     V  R 
Sbjct: 255 ADGKLYFKGEYIMDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAFGGVKHRL 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +FVG    G   Y D   T+  +    K +        +++   G DR      ++  + 
Sbjct: 315 QFVG-EINGVSFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLV 370

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+    PR +     +AE+       IE  +  +A R A  +  K D++++
Sbjct: 371 G-LKKMVILGQSAPRVQRAAD-KAEVE-----TIEALDIADATRKAFAIAEKGDIVLL 421


>gi|270263960|ref|ZP_06192228.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
 gi|270042153|gb|EFA15249.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
          Length = 491

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 145/420 (34%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   +E++ R       + + G+ +   + ++    +  +   T+S + K        
Sbjct: 231 VDDPVVRELLPRVGR---HITTYGFSEDADVRIESYRQVGPQGHFTLSRQDKPLMTVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR-- 357
            PG     NA  A  +    GID   +L  L        RF+F+G       N + G   
Sbjct: 288 APGRHNALNAAAAVAVATEEGIDDEDILRALAGFQGTGRRFDFLGEFPLEPVNGKSGTAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    +++ LK  R      R++++F                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDVTLKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFANVLSQVDVLLML 407

Query: 417 DDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D     E      D   +   I   G    I   +      T  ++L  +D+++V G G+
Sbjct: 408 DVYAAGETAIPGADSRSLCRTIRSRGKLDPILVSDADIVPETLAQLLQAEDLVLVQGAGN 467


>gi|291279000|ref|YP_003495835.1| UDP-N-acetylmuramate-alanine ligase [Deferribacter desulfuricans
           SSM1]
 gi|290753702|dbj|BAI80079.1| UDP-N-acetylmuramate-alanine ligase [Deferribacter desulfuricans
           SSM1]
          Length = 460

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 131/395 (33%), Gaps = 43/395 (10%)

Query: 67  GAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           G +  +  +  +++D     +S+ I+ + P L+    R    +    +  +       + 
Sbjct: 50  GVKVFIGHNPENVKDVDVVVYSSAIKEDNPELISAKDRHIPVIKRGEMLAELTRLKRSIT 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V+G+ GK++  S +  I   +     ++ PT  I      +              + L  
Sbjct: 110 VSGSHGKTTTTSMIAHIFIEA-----KLDPTIVIGGRLNSSGQN-----------AVLGK 153

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                   + S           +       TN+  +H+D +Q  +   +A    F E   
Sbjct: 154 GDYFICESDESDRSFLL-----LYPTINVVTNIDLEHLDVYQDLEDIKSA----FIEYCN 204

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK 298
           K     +      ++ V     +   R  + G++    I    +          +    +
Sbjct: 205 KIPFYGLNLLCIENQNVTDIIPSIEKRFQTYGFKKSADIRADNIIQDGYISTFDVYYFSE 264

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                    PG   V N+L A G+ I  GI   ++ E L+    V  R      + R   
Sbjct: 265 KLGRIHLNTPGIHNVLNSLGAIGVAIECGITFDVIKEALKNFQGVERRLSIRYKDER-RV 323

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  L+++R++     IV +F                 +    DI IVT
Sbjct: 324 VIDDYGHHPTEIKATLQSVRSLYPDYKIVTIFQPHRYTRTKALLNEFASSFYDTDILIVT 383

Query: 417 DDNPRSEDP-EKIRAEII------HGIPGFIEKGN 444
           D    SE P E + ++I+       G+       +
Sbjct: 384 DIYAASEAPIEGVSSDILVEKIKMQGLKDVYYIAD 418


>gi|289574835|ref|ZP_06455062.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
 gi|289539266|gb|EFD43844.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
          Length = 437

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 100/294 (34%), Gaps = 34/294 (11%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ + +AY  A    F E +      ++  DD     + +RA   
Sbjct: 126 PHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGALVVCTDDPGGAALAQRATEL 184

Query: 264 GCRVLSVG-YQGKFIHLKKVCAIHNKQQV--------TISVEGKDFDFLFPLPGEFQVYN 314
           G RVL  G   G+ +    V                  ++           +PG     N
Sbjct: 185 GIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVPGRHMALN 244

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
           AL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    +  
Sbjct: 245 ALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTEISA 304

Query: 372 ILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L   R +      GR +VVF                 AL+ AD   V D     E P  
Sbjct: 305 TLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGRALNAADEVFVLDVYGAREQP-- 362

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHET 471
                + G+ G     +    +R                +  DV+V  G G  T
Sbjct: 363 -----LAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIVTMGAGDVT 411


>gi|306827028|ref|ZP_07460326.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
 gi|304430774|gb|EFM33785.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
          Length = 438

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 152/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 34  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 93

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 94  FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 138

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 139 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 190

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +LK     
Sbjct: 191 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTQATVIPFSTQKVVDGAYLKDGILY 246

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 247 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 299

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 300 LQRVG-QIKDITFYNDSKSTN--ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 355

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 356 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 407


>gi|261337521|ref|ZP_05965405.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium gallicum DSM
           20093]
 gi|270277921|gb|EFA23775.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium gallicum DSM
           20093]
          Length = 521

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 134/426 (31%), Gaps = 59/426 (13%)

Query: 82  FSATIRSNTPILVVDNTRKFLSL------FASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           +S+ I+ + P +  +  R+ L++       A  + GK     + V G  GKS+ ++ +  
Sbjct: 97  YSSAIKPDNPEIQ-EAARQGLAIVHRSDILAWLMDGK---RAVTVAGAHGKSTTSALLAH 152

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   +G             S+A    +  P         +      V        S    
Sbjct: 153 ILVTAGQGD------LADPSYAIGASIQGPDGTTRDGGHTGTGDVLVAEADESDGSFA-- 204

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                         TN   DH+D++ T   Y  A               I+  DD  ++ 
Sbjct: 205 -----KYHPTIAIITNAEPDHLDHYGTADRYHAA---FVNHASHATQSVILCVDDPGARS 256

Query: 256 VMKRAHNAGC-RVLSVGYQGKF------------IHLKKVCAIHNKQQVTISVEGKD--- 299
           V++        R ++ G   +             I  ++  A    ++  I +  +    
Sbjct: 257 VLQGMDALTASRTITYGTTAREELGDLNGATFVSISDEQETAGDGSERFVIDMPARVAHA 316

Query: 300 ---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A      +G+D  +  +     H    RF+  GT   G 
Sbjct: 317 ATVVPVTLSIPGIHNARNATAAIIAATLLGMDPFVAAQAATSFHGAARRFDIKGT-VNGV 375

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R     R+ V+F                 AL LAD  IV
Sbjct: 376 TVVDDYAHHPTEIAALLTAARRRYPKARLHVLFQPHLFSRTQFFAQEFAQALALADDVIV 435

Query: 416 TDDNPRSEDPEKIRA-------EIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           T   P  E  E           E   GI     P   +  +  EA    +E +   DV++
Sbjct: 436 TGIFPARERQEDFANVTAHTIVEQAEGITDHAQPWISDMDDMQEAAAAVVERVQPGDVVL 495

Query: 464 VAGKGH 469
             G G 
Sbjct: 496 TVGAGD 501


>gi|319757602|gb|ADV69544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis JS14]
          Length = 447

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               +  G   I  S    L D    +    P +  DN    K +            A  
Sbjct: 47  AQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGIPVWTEVELAYL 106

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G    ++     I   A     T  +  
Sbjct: 107 VSDVP---IVGITGSNGKTTTTTMIAEVLN-AGKKPAKL--CGNIGYPASSVAQTATAED 160

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     G                  +         TNL   HIDYH T + Y  
Sbjct: 161 TLVMELSSFQLMG-----------------TESFHPHIAVVTNLIASHIDYHGTFEDYVA 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +  ++  ++   +I  +   +KE+  +         +          ++V      
Sbjct: 204 AKWMIQRQMTAED-FVVINFNQKEAKELAGQTKATVVPFST----------QEVVDGAYL 252

Query: 289 QQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +  +G+         +PG   V NAL    +   +G+D   + E L     V  R 
Sbjct: 253 ADGKLYFKGEYIMDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAFGGVKHRL 312

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +FVG    G   Y D   T+  +    K +        +++   G DR      ++  + 
Sbjct: 313 QFVG-EINGVSFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDLV 368

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L  + I+    PR +     +AE+       IE  +  +A R A  +  K D++++
Sbjct: 369 G-LKKMVILGQSAPRVQRAAD-KAEVE-----TIEALDIADATRKAFAIAEKGDIVLL 419


>gi|257061316|ref|YP_003139204.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8802]
 gi|256591482|gb|ACV02369.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8802]
          Length = 494

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 138/430 (32%), Gaps = 59/430 (13%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +    ++ A      PI    +    L               +AV GT GK++
Sbjct: 105 VICSTAIAKNNSEYQAAQEKGCPIFHRSDVLAALI---------SDYQSIAVAGTHGKTT 155

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S V  +  ++GL    I                    +   +  ++L S        +
Sbjct: 156 TSSLVGYVLLKAGLDPTII----------------VGGEVDAWEGNAHLGSSKYLVAEAD 199

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++++ +       ++FE    +    +   
Sbjct: 200 ESDGSLVKH-----SPTIGVVTNIELDHPDHYESLEQVVRT-FQIFE---TQCEILVGCI 250

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           D    +  +          ++            +K +          +   G+       
Sbjct: 251 DCETVRSQLN-------PTITYSLDPAKNADYTVKNLTYDAQGTIAEVWERGRFLGQMRL 303

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PGE  V NAL A  +   +G+D  ++ + L        RFE  G  S G     DYAH
Sbjct: 304 TIPGEHNVSNALAAVAVGRKLGLDFQVIADALATFGGAKRRFEHRG-YSNGITFIDDYAH 362

Query: 365 TSNSLEMILKNIRTITSGR----IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             + ++  L   R+         ++ +F                 A   AD+ I++D   
Sbjct: 363 HPSEIQATLSAARSKVDQNGSSRVVAIFQPHRYSRTATFLADFAQAFQAADLVILSDIYS 422

Query: 421 RSE-DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-----EMLNKQDVLVVAGKGHETVHI 474
             E +   I  + +             E    A+     ++L   D+ +  G G+    I
Sbjct: 423 AGEVNIHNITGQDLANAVKVHHSQVIYEPCLKALTESLPQLLQPGDLALFLGAGN-LNQI 481

Query: 475 VTNGEKKMSV 484
           +     +  V
Sbjct: 482 IPQVIARYDV 491


>gi|221069122|ref|ZP_03545227.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
 gi|220714145|gb|EED69513.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
          Length = 856

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 141/404 (34%), Gaps = 40/404 (9%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N  + +VD       LFA    G+ P  ++AVTGT+GK++    +  +    G  +  
Sbjct: 450 PRNVGVPMVD------ELFAPGDDGRIP--LVAVTGTNGKTTTTRVIAHLFTSHGWRTAM 501

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T+T   +    ++ +        A + L+        +E +  G+ +  L   +   
Sbjct: 502 ---TNTDGVYVNGRQIDSGDCSGPKSARNALAHPETDAAVLECARGGILREGLGFDRCQV 558

Query: 207 GSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              TN+G  DH+   +  T++     K  + + + P    A++ A D     V   AH  
Sbjct: 559 AVVTNVGEGDHLGLNFITTKEDVGVLKRVIVQNVAPT-GYAVLNAADPL---VAAMAHVC 614

Query: 264 GCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEG--------KDFDFLFPLPGEF 310
             +V+                +    ++      ++ EG        +D          F
Sbjct: 615 PGKVIFFAADRHHPVMATHRAQGSRVVYVDGDAIVAAEGSWRESIALRDIPLTRNGTITF 674

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVDYAHTSNS 368
           QV N + + G   A G+    +   L             F   + +G  I  DY H  ++
Sbjct: 675 QVENVMASIGAAWAAGLPWQTIRRGLAGFLNDSDNAPARFNVMDYKGATIIADYGHNPDA 734

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEK 427
           +  + + +  + + R  VV    GDR         +I   + D  ++  D   R     +
Sbjct: 735 IRALSQAVEAMPAKRRSVVISGAGDRRDQDITEQTQILGKVFDEVVLYQDACQRGRVDGE 794

Query: 428 IRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + A +  G+ G        E      AI  A+  L   D+ +V 
Sbjct: 795 VLALLKKGLEGAPRTSYSTEIHGEFLAIDHALARLQPGDLCLVL 838


>gi|330997824|ref|ZP_08321659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569712|gb|EGG51477.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 444

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 123/353 (34%), Gaps = 41/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I +++G   + +G    I                     
Sbjct: 103 AKMICITGSNGKTTTTSLIYHIFKKAG---YNVGLAGNIG----------------QSLA 143

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRL 233
             ++ +   +  +E SS  LD   +   +       N+  DH+D +    Q Y +AKMR+
Sbjct: 144 LQVAEKDYDYYVIELSSFQLDN--MYRFRANIAVLLNITPDHLDRYDHCMQNYVDAKMRI 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +     ++      D    KE+ K +     C    +  +G   +L     +     + 
Sbjct: 202 LQNQEETDAFVYWNDDPIIRKELEKYQIKAKKCPFSILKKEGMIGYLADGQYV-----IE 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        L G+  +YN+L A       G+ + ++ + L     V  R E V   
Sbjct: 257 YPTPFNMEQESLALTGKHNMYNSLAAGITADIAGVKNEVIRQSLSDFEGVEHRLEKV-VR 315

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            RG     D   T+  ++     + ++ +    V+   G D+      I   +      +
Sbjct: 316 VRGVDYINDSKATN--VDACWYALESMKTPT--VLILGGKDKGNDYEAIAELVRKKCVGL 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN       K+ A     GIP   +  +  + +     M    D +++
Sbjct: 372 VFLGADN------GKLHAFFDSFGIP-IADTHSMKDCVEACYRMARPGDTVLL 417


>gi|198274310|ref|ZP_03206842.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
 gi|198272800|gb|EDY97069.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
          Length = 443

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 134/384 (34%), Gaps = 38/384 (9%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ PI++    +    +      G++    ++ +TG++GK++  S +  I +++G
Sbjct: 69  SPGIPNDAPIILKLKNQGTPIISEIEFAGRYTNAKMICITGSNGKTTTTSLIYHIFKKAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+    G                            ++     +  +E SS  LD   +  
Sbjct: 129 LNVGLAGNIG-------------------QSLAYQVAECNYDYYVIELSSFQLDN--MYK 167

Query: 202 IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    N+  DH+D +    Q Y +AK R+ +     ++      D    KE+ K  
Sbjct: 168 FHANIAVLMNITPDHLDRYGFEMQNYVDAKFRIIQNQTDDDAFIFWNDDPIIQKELHKYG 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +      +   +       +   ++  + +  ++E ++      L G   ++N++ A  
Sbjct: 228 IHGQYFPFAEKNEEGVAAFTEENKVYFTRPIAFNMEQEE----LALTGTHNLFNSMAAGI 283

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + E L     V  R E V        I    A   NS    L++++T  
Sbjct: 284 SANIAGIRKECIREALNDFKGVEHRLEKVARVKGVDYINDSKATNVNSCWYALQSMKT-- 341

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
                ++   G D+      I   +    + +  +   N      EK+     +     +
Sbjct: 342 ---KTILILGGKDKGNDYNEIADLVKEKCSGLIFLGLHN------EKLHDFFDNFGLPIV 392

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +  +A+  A  M  K + +++
Sbjct: 393 DVQSMPDAVNAAYNMAKKGETVLL 416


>gi|24379029|ref|NP_720984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           mutans UA159]
 gi|30316024|sp|Q8DVE3|MURD_STRMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24376923|gb|AAN58290.1|AE014899_9 putative D-glutamic acid adding enzyme MurD;
           UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Streptococcus mutans UA159]
          Length = 451

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 126/350 (36%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + +  +   +G S+   G    I   A +          L   L
Sbjct: 112 APIIGITGSNGKTTTTTMIADVLNHAGQSARLSG---NIGFPASEVAQPVTEKDILVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                  +         TNL   HIDYH + + Y  AK  + 
Sbjct: 169 SSFQLMG-----------------TESFHPHMAVITNLMPTHIDYHGSFENYIEAKWNI- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++ + KE   ++  +   +K++  +         S   +    +L         Q +  +
Sbjct: 211 QKNMTKEDFLVLNFNQDLAKDLANQTQAKIIP-FSTKEKVDGAYLDGQMLCFKGQAIMSA 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    G+ +  + E L     V  R + +G N  
Sbjct: 270 SE-------LGVPGSHNVENALATIAVAKLSGVSNEAIRETLIHFGGVKHRLQSLG-NIA 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +++   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDIKG-LKKMII 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +  PR +      A +  G+  ++   +  +A R A +  +  DV+++
Sbjct: 378 LGESAPRLK-----HAAVQAGVT-YLNAKDVAQATRIAFQEASPGDVVLL 421


>gi|264680248|ref|YP_003280158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
 gi|262210764|gb|ACY34862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
          Length = 634

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 156/417 (37%), Gaps = 55/417 (13%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             +L   R    +   +L +TGT+GK++V S   Q+ +  GLS   +G    I     D 
Sbjct: 236 AFALKGLREAHGYAPKVLGITGTNGKTTVTSLTGQLLEHGGLS---VGVAGNIGPSLLDT 292

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    L +A             +E SS  LD  R  G +  A +  N+ +DH+D+H
Sbjct: 293 LSARIDAETLPQA-----------WVLELSSFQLDDCR--GFEPTAATVLNITQDHLDWH 339

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--------KRAHNAGCRVLSVG- 271
              QAY +AK  +F E    ++  ++  +D     ++        KR        +S G 
Sbjct: 340 GGMQAYADAKAHVFGE----QALMVLNREDPVVMAMLPAPVAVPSKRGKTFQRAHVSFGG 395

Query: 272 ----YQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNA 315
                 G F    +  +  +    +   + +GK+ D L            + G     NA
Sbjct: 396 DMPRRPGDFGLEVVNGMTWLVRAHEADETSKGKNADDLHIVRLMPADALRIRGRHNAINA 455

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  L    G   A +L  L +    P R + VG    G   Y D +  +N +   +  
Sbjct: 456 LSALALATGAGCTLAPLLYGLREYRGEPHRVQPVG--RVGDVEYFDDSKGTN-VGATVAA 512

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +  +     IVV   G  + Q   P+   ++  +    ++  D P       IR  +   
Sbjct: 513 LMGLGPDHRIVVILGGLGKGQDFTPLAAPVSRYVRAAVLIGQDAP------LIREALGDT 566

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               ++  +  +A++ A  + +  D ++++     ++ +  +   +     + +RE+
Sbjct: 567 GVTLVDAASMQDAVQQAARLAHANDAVLLS-PACASMDMFKDYADRAHQFVEAVREL 622


>gi|56752359|ref|YP_173060.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           6301]
 gi|81300550|ref|YP_400758.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           7942]
 gi|81561305|sp|Q5MZI0|MURC_SYNP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93141289|sp|P95836|MURC_SYNE7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56687318|dbj|BAD80540.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus elongatus PCC
           6301]
 gi|81169431|gb|ABB57771.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           7942]
          Length = 478

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 149/453 (32%), Gaps = 68/453 (15%)

Query: 58  LFIPQAIAQGAE-AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            F  +A++ G    ++ S+A     +++ A I    P+    +    L            
Sbjct: 67  EFFQEAVSAGQSPQVICSTAIHAHNEEYQAAIDLGCPVFHRSDLLAALLRV--------- 117

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++ +  +  +  ++GL      PT  I                L +  
Sbjct: 118 YESIAVAGTHGKTTTSGLIAYLLYQAGLD-----PTVVIGG----EVNALGGNARLGQGR 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++    +  S            L  ++   G  TN+  DH D++   +A  +     F
Sbjct: 169 HLVAEADESDGS------------LVKLQAAIGIITNIELDHPDHYCDLEAVIST----F 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQV 291
           +      S  I   D    +       +     +S       G    + +V    +  Q 
Sbjct: 213 KTFSDNCSQLIANWDCPTVR-------DRLPGTISYSLDPARGADYTVDQVSFRGSGTQA 265

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            I   G+       PL     + NAL A   C  +G+D A + E L        RFEF G
Sbjct: 266 RIWERGELLGRIHLPLLEAHNLSNALAAIAACRHLGMDFASIREGLAGFEGARRRFEFRG 325

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK----------NIRTITSGRIIVVFGCGGDRDQGKRP 400
            +++G +   DYAH  + L   L           +       R++ +F            
Sbjct: 326 -SAQGIQFVDDYAHHPSELAATLAAARLQIDSGCSRLPEVPKRLVAIFQPHRYSRTQAFL 384

Query: 401 IMGKIALDLADIAIVTDDNPRSE-DPEK-----IRAEIIHGIPGFIEKGNRIEAIR-TAI 453
                +   AD+ +++D     E +P +     +   I           + +EA+     
Sbjct: 385 AEFAQSFGPADLVLISDIYAAGERNPGQLSGQTLADAIAQYQANVHYAPD-LEAVEQRLH 443

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++L   D+ +  G G+    ++       + D 
Sbjct: 444 QLLQPGDLALFLGAGN-LNQVIPRLLDHYACDR 475


>gi|56808764|ref|ZP_00366481.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M49 591]
          Length = 438

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D         P +  DN   ++ L+           A 
Sbjct: 34  AAQALLEEGIKVICGSHPVELLDEDFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 93

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 94  FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 138

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 139 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 190

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +LK     
Sbjct: 191 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTKATVIPFSTQKVVDGAYLKDGILY 246

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 247 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 299

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 300 LQRVG-QIKDITFYNDSKSTN--ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 355

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 356 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 407


>gi|313680165|ref|YP_004057904.1| UDP-N-acetylmuramate--l-alanine ligase [Oceanithermus profundus DSM
           14977]
 gi|313152880|gb|ADR36731.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanithermus profundus DSM
           14977]
          Length = 450

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 133/421 (31%), Gaps = 42/421 (9%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P  +  G + +V S+A           +   + V+   +    +           
Sbjct: 52  GHD--PAHLE-GVDVLVASNAVPEDHPERRAAARAGVPVMARMQVLAGILERG------- 101

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + V+GT GK++  S +  +    G     +   +T+ S   + R              
Sbjct: 102 RSIGVSGTHGKTTTTSMIAHVFTELGADPVVL-VGATVPSLGGNARWGAG---------- 150

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   H   E             + +     TNL  DH+     +Q Y      L  
Sbjct: 151 -------RHRIAEVD---ESDPLFAEVAVDLAVLTNLEDDHVAAGAARQTYHADYASLRA 200

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                 + A     +A   E+   A   G   +  G++      + V       +  ++ 
Sbjct: 201 AARAYAARAGRVLYNADWAEL--EALTEGLERVGYGFERGRYRAEDVRLEAGGSRFVLTH 258

Query: 296 EGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G     +    PG   V NA+ A       G+D AL    L        RF+  G   R
Sbjct: 259 DGAALAEVALAVPGRHNVENAVAALATAHLEGLDPALAACALAGYKGAARRFQTTGH-LR 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +  DYAH    +   L   R  T  R+ VVF         +       AL  AD   
Sbjct: 318 GAWVVDDYAHHPTEVRATLAAARA-TGRRVRVVFQPHRYLRTQQMWARFAEALRDADEVW 376

Query: 415 VTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           V D    SE+P       + A+ +  +     +    E +R A+ E     D+++  G G
Sbjct: 377 VLDVYAASEEPIPGVSGALIADRLRELGHERARFAAWEEVRGALAESAKAGDLILTMGAG 436

Query: 469 H 469
            
Sbjct: 437 D 437


>gi|10566906|dbj|BAB16028.1| MurD [Streptococcus pyogenes]
          Length = 439

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D         P +  DN   ++ L+           A 
Sbjct: 35  AAQALLEEGIKVICGSHPVELLDEDFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 94

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 95  FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 139

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 140 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 191

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +LK     
Sbjct: 192 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTKATVIPFSTQKVVDGAYLKDGILY 247

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 248 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 300

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 301 LQRVG-QIKDITFYNDSKSTN--ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 356

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 357 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 408


>gi|148241126|ref|YP_001226283.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. RCC307]
 gi|189082508|sp|A5GPX1|MURC_SYNR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147849436|emb|CAK26930.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. RCC307]
          Length = 479

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 134/435 (30%), Gaps = 71/435 (16%)

Query: 62  QAIAQG---AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            AI  G   A  +VVSSA    +          + VV  +     L A  +  +H    +
Sbjct: 68  DAICSGVDRAPLVVVSSAIPETNPELEAARGAGLRVVHRSE----LLAWLINAQHS---I 120

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV G+ GK++ +S +  +   +GL    I     + +F  + R      +          
Sbjct: 121 AVAGSHGKTTTSSLIASLLHSAGLDPTAI-IGGVVPAFGSNARNGAGEWL---------- 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                    EA        R        G  TNL  DH D++    A   A MR F    
Sbjct: 170 -------VAEADESDGSLVR---FHPQLGLITNLELDHTDHYPNLDALV-ATMRRFSG-- 216

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              S  +   D      V+    +A                  +       +     +G+
Sbjct: 217 -NCSSVLANRDCP----VLSAELSADHWWSLQENSSAHFRAVPLSLDGAGCRADYLEDGR 271

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +   P+ G   + NAL A   C   G   A +   L +L     RF+  G   +G  
Sbjct: 272 RLGELALPMAGIHNLSNALAAVAACRLAGASFADLQAALTELVPPGRRFDLRG-EWQGRL 330

Query: 358 IYVDYAHTSNSLEMIL----------KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           I  DYAH  + ++  L          K+       R++ VF         +       AL
Sbjct: 331 IVDDYAHHPSEVDATLTMAQLMVSSGKSTLPWVPKRVVAVFQPHRYSRTAQFMERFAEAL 390

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN---------- 457
             AD  +V       E         I G+          +A  +A  + +          
Sbjct: 391 GCADEVLVAPLYSAGESA-------IEGVSSATLAEKVQQAGHSARALADMDSLVDAVQQ 443

Query: 458 ---KQDVLVVAGKGH 469
                D+++V G G 
Sbjct: 444 CSSAGDLVLVMGAGD 458


>gi|307706272|ref|ZP_07643086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
 gi|307618363|gb|EFN97516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
          Length = 450

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 41/378 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G      G    I   A     T      L   L
Sbjct: 112 APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTATDKDTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     GV                           TNL   HIDYH + + Y  AK  + 
Sbjct: 169 SSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVAAKWNI- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +      ++  +   +KE+  +         ++         K   A     Q+   
Sbjct: 211 QNKMTATDFLVLNFNQDLAKELATKTQATVVPFSTLE--------KVDGAYLEDGQLYFR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    G+D+  + E L     V  R +FV    +
Sbjct: 263 GEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-EIK 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +++   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TGLKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       +  E+++         +++  +  +A R A E+  + DV++++   + +  +
Sbjct: 378 L------GQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLS-PANASWDM 430

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E +  +  D + E+
Sbjct: 431 YANFEVRGDLFIDTVAEL 448


>gi|139473454|ref|YP_001128170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes str. Manfredo]
 gi|158512776|sp|A2RDK9|MURD_STRPG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134271701|emb|CAM29934.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes str. Manfredo]
          Length = 452

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPLLTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 108 FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 152

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 153 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +L      
Sbjct: 205 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTKATVIPFSTQKVVDGAYLNDGILY 260

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 261 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 314 LQRVG-QIKDITFYNDSKSTN--ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 369

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 370 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|260775615|ref|ZP_05884512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608796|gb|EEX34961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 456

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 123/363 (33%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D+   +V++R           G QG +   K+V         T
Sbjct: 207 LV-RTVPGNGRILAPQGDSAIADVLQR--GCWSETEFSGEQGDWRAEKQVAD---GSIFT 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L G+  V NAL+A      +G+   L  + L K      R E  G 
Sbjct: 261 VFFQGEAVGTVKWDLVGDHNVDNALMAIAAARHVGVTPDLACQSLAKFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
            ++   +Y D+AH   ++E+ +  +R     + I+            G        +L  
Sbjct: 321 VNQ-ITVYDDFAHHPTAIELTVGGLRNKVGKQRILAVLEPRSATMKRGVHKETLAASLAQ 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD+  +         P+ I     +I           + ++A ++   E     D ++V 
Sbjct: 380 ADVVFLYQ-------PDNIEWSVEDIAQQCQQSAYASDSVDALVQMVTEQAQPGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|260201266|ref|ZP_05768757.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289443657|ref|ZP_06433401.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289416576|gb|EFD13816.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
          Length = 494

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 143/437 (32%), Gaps = 73/437 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVT 121
           GA A+V +         A I    P LV    R        ++ A  + G+     L VT
Sbjct: 73  GATAVVTT--------YAAIPKTNPELVEARRRGIPVVLRPAVLAKLMAGR---TTLMVT 121

Query: 122 GTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++  S +    Q  G   SF +G    +     +    +                
Sbjct: 122 GTHGKTTTTSMLIVALQHCGLDPSFAVG--GELGEAGTNAHHGSGD-------------- 165

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  + S   L Q+            TN+  DH+D++ + +AY  A    F E +  
Sbjct: 166 -CFVAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVP 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQV-------- 291
               ++  DD     + +RA   G RVL  G   G+ +    V                 
Sbjct: 219 GGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLAS 278

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++           +PG     NAL A    + IG  +  VL+ L     V  RFE VGT
Sbjct: 279 ELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGT 338

Query: 352 NSRG---GRIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGK 404
              G    R++ DYAH    +   L   R +      GR +VVF                
Sbjct: 339 CGVGKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFG 398

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IE 454
            AL+ AD   V D     E P       + G+ G     +    +R              
Sbjct: 399 RALNAADEVFVLDVYGAREQP-------LAGVSGASVAEHVTVPMRYVPDFSAVAQQVAA 451

Query: 455 MLNKQDVLVVAGKGHET 471
             +  DV+V  G G  T
Sbjct: 452 AASPGDVIVTMGAGDVT 468


>gi|255002719|ref|ZP_05277683.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Puerto Rico]
 gi|255003848|ref|ZP_05278649.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Virginia]
          Length = 474

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 133/412 (32%), Gaps = 46/412 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A    +           LV+  T        +          + V+G+ GK+
Sbjct: 70  ADVVVYSNAIKDDNVELQSAIAAGKLVLRRTELLSKALGAG-------RTIVVSGSHGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +  I + +G+      PT  I   A                 +Y    G   V  
Sbjct: 123 STTGMIASIMEHAGMD-----PTVFIGGIAFHYGN------------NYKMGAGEWAVVE 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S          +       TNL  +H D +   +A        F   +     +++ 
Sbjct: 166 GDESDAG----FTELPCEIAVVTNLEWEHPDKYSCLEALERV-FSDFLRNVKAGGASVMP 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFD--FLF 304
                S+      + A C  ++ G +G  +       + +     I  + G++       
Sbjct: 221 -----SRLSFTLGNGAKCSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEICCGVRL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG   V NAL AA +   IG+    +   LE    V  RFE +  N  G     DYAH
Sbjct: 276 PVPGRHNVENALAAAAVAKHIGVGCNYIKAGLEGFMGVGRRFEII-ANVGGVTFVDDYAH 334

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +E      + + TSGR+I +                  A+   D  I+TD  P  E
Sbjct: 335 HPTEIEASRNAAKLSTTSGRVIGILQPHRFTRVQHFFKDFTSAISKFDYLILTDVYPAGE 394

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +         I  E+       +   +  + I   +       DV++  G G
Sbjct: 395 EVISGCESLDIVREMKSRGFDQVVHASTPDTITDIVASVAQPGDVVIAMGAG 446


>gi|225868966|ref|YP_002744914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702242|emb|CAW99994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 457

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 144/417 (34%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS---------LFAS 107
             QA+  +G   I  S    L D         P +  DN    + L            A 
Sbjct: 52  AAQALLEEGIRVICGSHPLELLDEDFYCMVKNPGIRYDNPMVVRALDKAISILTEVELAY 111

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +      S+   G     +S            
Sbjct: 112 LVSE---APIIGITGSNGKTTTTTMIADVLNVGDQSALLAGNIGFPASEVAQAATAK--- 165

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                            + +E SS  L     +  +      TNL   H+DYH + + Y 
Sbjct: 166 ---------------DILVMELSSFQLL--GTEQFQPHIAVITNLVPTHLDYHGSFEDYI 208

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK R+ +  +  +   ++ AD    K + ++   +     S   +    +L        
Sbjct: 209 AAKWRI-QHRMTGKDYLVLNADQELVKSLAQKTKASPV-FFSTKEKVDGAYLADGYLYFK 266

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++++  + E         +PG   + NAL    +    GI + ++   L     V  R +
Sbjct: 267 EERLMSAAE-------LGVPGRHNIENALATIAVAKLRGISNQVISRTLSHFRGVKHRLQ 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VGT ++    + + + ++N L    K +    + R+I++   G DR      ++  +  
Sbjct: 320 LVGTLNQ--VTFYNDSKSTNIL-ACQKALSGFDNSRVILI-AGGLDRGNEFDELVPDLVG 375

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       E  E+++         +++  +   A + A E     D++++
Sbjct: 376 LK--KMILL-----GESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKAGDIILL 425


>gi|309776032|ref|ZP_07671024.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916314|gb|EFP62062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 437

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 168/436 (38%), Gaps = 52/436 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILA 119
           Q   QG    +    Y+    +  I+   P +   V++  K L+            +  A
Sbjct: 48  QVFEQGHPEELKHEGYAFVVKNPGIKYTVPFVRYFVEHKVKILTEVEIGYRYAKGFHYGA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GK+++ + + ++ +                       +   +  +    L+    
Sbjct: 108 ITGTNGKTTITTMLYEMLK------------------YNKKAIVAGNIGWPLSELALKYE 149

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V++E S+  L    ++          NL  DH+DY  + ++Y+ +KMR+++    
Sbjct: 150 AEEKDVALELSNFQLL--GIEHFAPSVSVVCNLAPDHLDYMPSVESYYESKMRIYKNCT- 206

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   +   DDA    V++ A N  C V+      + + L +       + + +  E K 
Sbjct: 207 KDDWFLRNVDDAT---VLQYAQNIPCTVIDFSLTRQDVDLYRKDGAVYLRDILL-FEEKS 262

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F  +    G++ + NA++AA +   +G+    + + +     V  R E++G    G + Y
Sbjct: 263 FHVV----GDYNLSNAMIAACMAYKLGVSVRDIQKAIASFQPVEHRLEYIGEK-NGVKFY 317

Query: 360 VDYAHTSN-SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            D   T+  ++   L +  +      I++   G D+      +    A     +A     
Sbjct: 318 NDSKATNTHAVTAALSSFES-----NIILLAGGHDKGISFDDLRQYDARVKLCVAF---- 368

Query: 419 NPRSED-PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
               E  P+    EI   +          EA++ AI    +QD+++++     +     N
Sbjct: 369 ---GETGPQ--FQEIFSHVH---VVETMQEALKEAIANSKEQDIILLSPACS-SYDQFPN 419

Query: 478 GEKKMSVDCDIIREIL 493
            E + ++  ++++E L
Sbjct: 420 YEVRGTLFKEMVKEWL 435


>gi|222528782|ref|YP_002572664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|254766034|sp|B9MQ99|MURD_ANATD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222455629|gb|ACM59891.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 457

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 162/429 (37%), Gaps = 53/429 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS    L      +     I V+          A R      +NI+A+TGT+GK++  
Sbjct: 72  VIVSPGVPLSKRPLVLAHKKGIEVIGEI-----ELAYRFCK--SKNIVAITGTNGKTTTT 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V +I ++        G       F      ++   I++                +E S
Sbjct: 125 TLVGEILKKQYEDVVVCGNIGL--PFIDTIETSSEDTIFV----------------LEIS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE  + +    ++  D+
Sbjct: 167 SFQLE--TIKYFKPKIGCILNITPDHLNRHLTMENYTKAKMRIFEN-IDEMGYTVLNYDN 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
             +++++  A              K     +         +  + EGK  + +      +
Sbjct: 224 NITRDLIGLAKGNVIVF------SKTKTQFENVVFVENDVIYFTFEGKTQEVMKKDEIFI 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHT 365
           PG+  + NAL A    +  GI+   + + L+    V  R EFV     G + Y D     
Sbjct: 278 PGQHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFV-AEINGIKFYNDSKGTN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +++ E  L           I++   G D+ +        +A  +  + ++       +  
Sbjct: 337 TDAAEKALNAFEN-----PIILIAGGYDKGESFEKFASLVAKKVKKVFLL------GQTK 385

Query: 426 EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           +KI +E+   G   F       EA+R + E     D+++++     +  +  N E++  +
Sbjct: 386 QKIASELERIGYKNFEFVSTLKEAVRKSFECAQNGDIVLLS-PACASWDMFENYEQRGRM 444

Query: 485 DCDIIREIL 493
             + + E+L
Sbjct: 445 FKEYVNELL 453


>gi|329964555|ref|ZP_08301609.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fluxus YIT
           12057]
 gi|328524955|gb|EGF52007.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fluxus YIT
           12057]
          Length = 457

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 125/362 (34%), Gaps = 33/362 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +G T+ +   A++             
Sbjct: 110 HNSKGLCVAGTHGKTTTSTMAAHLLHQS-----HVGCTAFLGGIAKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T    DH+D + T++AY  +  R
Sbjct: 155 --NLLLSQESPYTVIEADEFDRSFHWLS---PWISVITATDPDHLDIYGTKEAYLES-FR 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      I++       +V       G  + +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALILHKGLELQPDV-----QPGVTIYTYSRNEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G     + + +     V  RF+F   
Sbjct: 264 FIAPDTRINDIRLGVPVSINIENGVAAMALAHLSGATDEEIKQAMASFRGVNRRFDF-KL 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +       DYAH    +   LK+IR      +I  +F                 +L LA
Sbjct: 323 KTDKVVFLSDYAHHPAEIAQSLKSIRELYRDKKITAIFQPHLYTRTRDFYKDFADSLSLA 382

Query: 411 DIAIVTDDNPRSEDP-EKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D  I+T+  P  E P   + +E+I  H  P   +   R E I   +      +VL+V G 
Sbjct: 383 DEVILTEIYPAREQPIPGVSSELIYDHLHPETEKCICRKENILKLLSG-KSIEVLIVLGA 441

Query: 468 GH 469
           G 
Sbjct: 442 GD 443


>gi|270292242|ref|ZP_06198456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
 gi|270279288|gb|EFA25131.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
          Length = 450

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 155/444 (34%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + +       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T  +  
Sbjct: 109 ISE---APIVGITGSNGKTTTTTMIGEVLTAAGQRGLLSG---NIGYPASQVAQTATAKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH + + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +KE+  R         +   +       +   ++ +
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKELATRTQATVVPFST--LEKVDGAYLEDGQLYFR 262

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +V ++ +         +PG   V NAL    +    GID+ ++ E L     V  R +F
Sbjct: 263 GEVIMAAD------EIGVPGSHNVENALATIAVAKLRGIDNQIIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VD-EIQGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         +++  +  +A R A E+  + DV++++   
Sbjct: 372 LKRMVIL------GQSAERVKRAAEKAGVAYVDATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|224536615|ref|ZP_03677154.1| hypothetical protein BACCELL_01490 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521706|gb|EEF90811.1| hypothetical protein BACCELL_01490 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 482

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 126/365 (34%), Gaps = 39/365 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +G T+ +   +++             
Sbjct: 135 HSSKGLCVAGTHGKTTTSTMAAHLLYQS-----HVGCTAFLGGISKNYGT---------- 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T    DH+D + T++AY  +  R
Sbjct: 180 --NLLLSQSSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTEEAYLES-FR 233

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II+ D A   +V      +G +V +        H + +   + +  + 
Sbjct: 234 HYTTLIQPGGALIIHKDIALKPDV-----QSGVKVYTYARTEGDFHAENIRIGNGEIFID 288

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G     +   +     V  RF+F   
Sbjct: 289 FVAPDTRINDIQLGVPVSINIENGVAAMALAHLNGATDEEIKRGMASFRGVDRRFDFKIK 348

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N +      DYAH    +   +K+IR +   + I  +F                 +L L 
Sbjct: 349 NDK-VVFLSDYAHHPAEIAQSVKSIRDLYQDKKITAIFQPHLYTRTRDFYKEFADSLSLL 407

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+ D  P  E P      + I   +  GI   +    R E I   +    K +VL+ 
Sbjct: 408 DEVILVDIYPAREQPIPGVTSQLIYDNLRPGIEKCMC---RKEDILNLLSQ-KKIEVLIT 463

Query: 465 AGKGH 469
            G G 
Sbjct: 464 LGAGD 468


>gi|307708861|ref|ZP_07645321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
 gi|307620197|gb|EFN99313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
          Length = 450

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G      G    I   A     T      L   L
Sbjct: 112 APIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTASDKDTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     GV                           TNL   HIDYH + + Y  AK  + 
Sbjct: 169 SSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVAAKWNI- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +      ++  +   +KE+   A      V+    Q K        A     Q+   
Sbjct: 211 QNKMTAADFLVLNFNQDLAKEL---ASKTQATVVPFSTQEKVDG-----AYLEDGQLYFR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    G+D+  + E L     V  R +FV    +
Sbjct: 263 GEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-EIK 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +++   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TGLKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       +  E+++         +++  +  +A R A E+  + DV++++   + +  +
Sbjct: 378 L------GQSAERVKRAADKADVSYVDATDIADATRKAYELATQGDVVLLS-PANASWDM 430

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E +  +  D + E+
Sbjct: 431 YANFEVRGDLFIDTVAEL 448


>gi|152976274|ref|YP_001375791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|189082871|sp|A7GRN8|MURD_BACCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152025026|gb|ABS22796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 451

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 142/397 (35%), Gaps = 45/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKS 127
           ++    +L   +  I  + P+LV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNIALVVKNPGIPYSNPLLVAATEKQIPIITEIELAYRISE---APFIGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +      +   L   LS     G      
Sbjct: 125 TTTMLTFEMLKEGEKHPAIAGNIGTVA---CEVAQAAKANEVLVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+     +  ++I 
Sbjct: 176 -----------VETFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTAAD-YSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA   E+   +      + S   + +     K  A++ K +  + ++         LP
Sbjct: 224 ADDADVMELSANSKGQKI-LFSTTKEIEDGACIKENALYFKGEKVVEIKD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  ++  L++   V  R E+V T           A    
Sbjct: 277 GKHNLENILAAMSIAKLLGVANEAIVAVLKRFTGVKHRLEYVTTIHNRKFYNDSKATNIL 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           + E  L    +      +++   G DR      ++     +    AIVT        P+ 
Sbjct: 337 ATEKALSAFTS-----PVILLAGGLDRGNEFDDLIPYF--EQHVKAIVTYGQTA---PKL 386

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + A    G+       +  EA+  A       DV+++
Sbjct: 387 VHAAEKAGLAIIEAVHHLEEAVERAYAHSADGDVILL 423


>gi|219558131|ref|ZP_03537207.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T17]
 gi|289570268|ref|ZP_06450495.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
 gi|289544022|gb|EFD47670.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
          Length = 482

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 143/437 (32%), Gaps = 73/437 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVT 121
           GA A+V + A         I    P LV    R        ++ A  + G+     L VT
Sbjct: 61  GATAVVTTHA--------AIPKTNPELVEARRRGIPVVLRPAVLAKLMAGR---TTLMVT 109

Query: 122 GTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++  S +    Q  G   SF +G    +     +    +                
Sbjct: 110 GTHGKTTTTSMLIVALQHCGLDPSFAVG--GELGEAGTNAHHGSGD-------------- 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  + S   L Q+            TN+  DH+D++ + +AY  A    F E +  
Sbjct: 154 -CFVAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVP 206

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQV-------- 291
               ++  DD     + +RA   G RVL  G   G+ +    V                 
Sbjct: 207 GGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLAS 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++           +PG     NAL A    + IG  +  VL+ L     V  RFE VGT
Sbjct: 267 ELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGT 326

Query: 352 NSRG---GRIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGK 404
              G    R++ DYAH    +   L   R +      GR +VVF                
Sbjct: 327 CGVGKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFG 386

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IE 454
            AL+ AD   V D     E P       + G+ G     +    +R              
Sbjct: 387 RALNAADEVFVLDVYGAREQP-------LAGVSGASVAEHVTVPMRYVPDFSAVAQQVAA 439

Query: 455 MLNKQDVLVVAGKGHET 471
             +  DV+V  G G  T
Sbjct: 440 AASPGDVIVTMGAGDVT 456


>gi|163843689|ref|YP_001628093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           ATCC 23445]
 gi|163674412|gb|ABY38523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis ATCC
           23445]
          Length = 467

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
              V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AVFVLSPGVPLTHPQ-------PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + +G      G   T                     L+     
Sbjct: 120 TGTNGKSTTTALIAHIIKATGRDMQLGGNIGT-------------------AILTLEPPC 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ADRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              AII  DDAY + +  R H AG RV+ +  +      +      +   Q   I  E  
Sbjct: 215 SGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEID-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C++ G+    +   L+    +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIVACLSAGLSREEIHAGLKSFPGLAHRMEQVG--RRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +V+ +  +N+ E     + +       +V
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWIV 359


>gi|19746474|ref|NP_607610.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS8232]
 gi|50914620|ref|YP_060592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10394]
 gi|30316063|sp|Q8P063|MURD_STRP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390307|sp|Q5XB04|MURD_STRP6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|19748678|gb|AAL98109.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes MGAS8232]
 gi|50903694|gb|AAT87409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10394]
          Length = 452

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 108 FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 152

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 153 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +L      
Sbjct: 205 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTKATVIPFSTQKVVDGAYLNDGILY 260

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 261 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 314 LQRVG-QIKDITFYNDSKSTN--ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 369

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 370 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|189219420|ref|YP_001940061.1| UDP-N-acetylmuramate-alanine ligase and UDP-N-acetylmuramate
           dehydrogenase [Methylacidiphilum infernorum V4]
 gi|189186278|gb|ACD83463.1| UDP-N-acetylmuramate-alanine ligase and UDP-N-acetylmuramate
           dehydrogenase [Methylacidiphilum infernorum V4]
          Length = 732

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 66/401 (16%), Positives = 128/401 (31%), Gaps = 46/401 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                ++ A ++   P++        L+L          + ++ VTG  GKS+ +  +  
Sbjct: 58  PLDNPEYRACVQRGIPLVKRAFLLSLLAL---------DKKVILVTGMHGKSTTSGMIAW 108

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I +  G   SF +G                     L    S    +G   V     S G 
Sbjct: 109 ILKDCGLDPSFYVG------------------AETLTPGGSAYLGRGEYMVIEGDESDGS 150

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +             N+  +H++Y+    A   A   +       +   I   DD + +
Sbjct: 151 FLY----FSPQYLVVLNIEEEHLNYYSDIDAILLAFKEMIAR---TQDIVIFNQDDPHCR 203

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            ++ RA     +      + +           ++       + +  +    +PG   V N
Sbjct: 204 TLLYRADK---KAFGYSLKERGPDFWIDSQGASQGYPVYREQNRLCNIKLQIPGMQNVQN 260

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  +  +IGI        L +   +  RFE      +   +  DYAH    ++  L+
Sbjct: 261 ALAALSMATSIGISPLSASSSLSRFLGLKRRFEL-KYKGKDYEVIDDYAHHPTEIKATLR 319

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-----R 429
           + +     R + +F             +   A   AD+ +VT+     E    I      
Sbjct: 320 SAKG-RGKRTVALFQPHRYSRIKTMKPLFAHAFHDADVVVVTEIFGAGEPSNGIDGWSLA 378

Query: 430 AEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            EI   G P  + + +        + ++   D ++  G G 
Sbjct: 379 KEIKEQGHPAVLFEKDLDRLASRTLSIIQPGDTIISLGAGD 419


>gi|256369849|ref|YP_003107360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
 gi|256000012|gb|ACU48411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
          Length = 467

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
              V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AVFVLSPGVPLTHPQ-------PHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + +G      G   T                     L+     
Sbjct: 120 TGTNGKSTTTALIAHIIKATGRDMQLGGNIGT-------------------AILTLEPPC 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ADRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGK 298
              AII  DDAY + +  R H AG RV+ +  +      +      +   Q   I  E  
Sbjct: 215 SGTAIIGIDDAYCQVIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEID-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C++ G+    +   L+    +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +V+ +  +N+ E     + +       +V
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWIV 359


>gi|188532900|ref|YP_001906697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           tasmaniensis Et1/99]
 gi|188027942|emb|CAO95799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 438

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    +   + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPSLIAAAQAGVEIVGDVELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLPALT--------------------LLQQPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E      +  ++
Sbjct: 158 ELSSFQLE--TTSSLKAAAATLLNVTEDHMDRYPLGMQQYRAAKLRIYEN----ATACVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL +           + V+G+        
Sbjct: 212 NADDAMTMPI----RGADARCVSFGADFGDYHLTRQQGSTW-----LRVQGEKVLNTDEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L+ L   + +P RF+ V  ++    I    A 
Sbjct: 263 HLVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQLVHEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +    +G + ++   G  +     P+   +  +   +     D     +
Sbjct: 323 NVGSTEAALNGL--HPAGTLWLLL-GGDGKSADFTPLTRYLQGERIRVYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI       ++     EA+R     +   D++++
Sbjct: 377 LAALRPEIA------VQTATMAEAVRQIAAQVRPGDLVLL 410


>gi|225023739|ref|ZP_03712931.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
 gi|224943621|gb|EEG24830.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
          Length = 451

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 157/406 (38%), Gaps = 46/406 (11%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++  A+A+G + + +S   S +             V+ +      + A  L GK    I+
Sbjct: 65  YLKNALAEGFDILALSPGVSERTPEIEAFKQAGGRVLGDVE----ILAHELSGKRN-KII 119

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GK++V S V  +C+  GL +   G   T                 + +A     
Sbjct: 120 AITGSNGKTTVTSLVGHLCRECGLDTVVAGNIGTP----------------VLEAYEDRQ 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q      +E SS  L+    D +   A +  N+  DH++ +     Y +AK ++F    
Sbjct: 164 EQSADVWVLELSSFQLEN--TDHLNAAAAAVLNISEDHLNRYDDLLDYAHAKDKIFRG-- 219

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +I ADDA  + + +       R  S+  +  +        + +  +  I+    
Sbjct: 220 --SGVQVINADDALCRAMKRSGRE--VRRFSLQQETDYWFDAASGYLKHGAETLIAAAD- 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G     N L A  LC AIG+    +L H+     +P R E +G   + G +
Sbjct: 275 -----IPLQGLHNAANVLAALALCEAIGLPREQLLRHVRTFKGLPHRVEKIGE--KNGVV 327

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           ++D +  +N            +    + +   G  + Q   P+   +      + ++ +D
Sbjct: 328 FIDDSKGTNVGATEAAIAGLQSP---LFLIAGGQGKGQDFTPLKNVLPGKARAVLLIGED 384

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            P      +IR ++       ++  +  EA++TA  +    D++++
Sbjct: 385 AP------QIRRDLAGCGVEMMDCASLQEAVQTAYRLAEPGDIVLL 424


>gi|27381717|ref|NP_773246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|27354886|dbj|BAC51871.1| bll6606 [Bradyrhizobium japonicum USDA 110]
          Length = 459

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 132/402 (32%), Gaps = 67/402 (16%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            E+   L      + +  I+ V+ DSR ++ G +FVA+ G    G  FI         A 
Sbjct: 9   AEVARALGA-AGSFPDTPIDFVTQDSRLVKPGSLFVALSGTPSGG--FI--------SAF 57

Query: 72  VVSSAYS---------------LQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPE 115
             +                   +    A IR   P +VV +T    L   A     +   
Sbjct: 58  ASARDGWEFADKAEAAGAAAMIVPHEIAGIR--VPQIVVKDTLIDGLWGLARAARARFNG 115

Query: 116 NILAVTGTSGKSSVASFVQQ---ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            ++ +TG++GK+S   F+             +   G   T+ +   D  L          
Sbjct: 116 PVIGLTGSAGKTSTKEFLAAYPNAYASPSSFNNFWGVPLTLCNARPDASLWVVE------ 169

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         +  +  G      +  +       N+   H++   + +A    K+ 
Sbjct: 170 --------------MGMNQTGEIARLSELTRPTVALVVNVQPVHLEKLGSLEAIRREKVS 215

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +   L P++   ++ A          +A     +V+  G   +   +          QV 
Sbjct: 216 IALGL-PEDGVLVLPAG--------LKASEWKGKVVRFGEHAEVHEVTHA-PHGESWQVV 265

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  K   F        +V NAL A     A  +D+A +   L+++ ++ GR   V   
Sbjct: 266 AMIGKKQIAFSLTPGAPHRVQNALAALASIRAANLDAATLAIKLDRVGIMTGRG--VEQA 323

Query: 353 SRGGRIYVD-YAHTSNSLEMILKN--IRTITSGRIIVVFGCG 391
             G  +  D +     S+   L +   R +T GR I V G  
Sbjct: 324 VGGVTVIDDSFNGNPASVAAALHSLQARNVTGGRRIAVLGDM 365


>gi|328885916|emb|CCA59155.1| UDP-N-acetylmuramate--alanine ligase [Streptomyces venezuelae ATCC
           10712]
          Length = 463

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 151/432 (34%), Gaps = 45/432 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           G     GH    + +A  A A+VVS  A    +      +   I VV  +    SL    
Sbjct: 54  GVTVHIGH--AAEHLADDASAVVVSS-AIRADNPELARAAELGIPVVHRSDALASLMDGL 110

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AV GT GK++  S +       GL            S+A    L  P   
Sbjct: 111 -------RAIAVAGTHGKTTTTSMLAVALTELGLDP----------SYAIGGDLAGPGTN 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L           V     + S     ++             N+  DH   + +    + 
Sbjct: 154 ALH------GDGEVFVAEADESDRSFQKY-----DPEVAIVLNVELDHHANYASMDEIYE 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGK-FIHLKKVCAIH 286
           +    F   +      ++  + A ++E+ +R A   G  +++VG        + K+    
Sbjct: 203 S-FEAFTAKIRPGGTLVV-GEHAGARELARRVADREGLDIVTVGESEDSDARILKIVPNG 260

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            K +VT++++G +  F   +PG    +NA  A      +GID A + + L     V  R 
Sbjct: 261 MKSEVTVALDGVEHTFTVSVPGRHYAHNAAAALAAGARVGIDPAELAQALTAYTGVGRRL 320

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
           +  G  ++G ++   YAH    +   L+ +R      R++VVF         +       
Sbjct: 321 QLKG-EAKGVQVIDSYAHHPTEMTADLEAMRGAAGASRLLVVFQPHLFSRTQELGKEMGD 379

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           AL LAD ++V D  P  EDP      E I A             ++         M    
Sbjct: 380 ALALADASVVLDIYPAREDPIPGITSELIIAAARQAGADVTAVHDKAAVPGVVAGMAGPG 439

Query: 460 DVLVVAGKGHET 471
           D+++  G G  T
Sbjct: 440 DLVLTMGAGDVT 451


>gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
 gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
          Length = 449

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 149/403 (36%), Gaps = 48/403 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + +VVS + SL++          I V+        +           +ILAVTGT+G
Sbjct: 63  KGIDTVVVSPSISLENILVREALARNIAVISEIELAFCI--------TKASILAVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  + + SG      G      S   D                       + +
Sbjct: 115 KTTTTKLLGLMLKNSGKKFAVAGNLGVSLSDKADLIDEK------------------SII 156

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E SS  L+   +   K    +  N+  DH++ H T +AY  AK R+FE +  +    +
Sbjct: 157 AAEVSSFQLEF--IKNFKPKTAAILNITPDHLERHHTMEAYVQAKARIFENMNFEN-CIL 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--- 302
           + ADD Y+ E+ + A N    V     Q          A  + +++ IS +G   +    
Sbjct: 214 LNADDKYTNELTEMA-NKHTNVCLFSIQKNI----DNGAFLDGEELVISYKGNKINICNK 268

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+    NAL A+ L    GI    +   L++   +P R EFV          ++
Sbjct: 269 NELQIKGKQNYANALAASFLAFFSGISLEAIRAALKEFKGLPHRIEFVRKFKN-----IN 323

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y + S +              + +++   G D+       M K+     ++ ++ +   R
Sbjct: 324 YYNDSKATNTDASIKGMEAFDKPVILIAGGHDKGIPLSEYMKKVKEHTKELILIGEATER 383

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E        I  G+       +  +A+  A +     D++++
Sbjct: 384 FEKVA-----IKEGVSNITRAKDMEDAVYKATKFAEAGDIIIL 421


>gi|325299145|ref|YP_004259062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318698|gb|ADY36589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 444

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 124/362 (34%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I +++GL+    G               
Sbjct: 95  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIG------------ 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +           N+  DH+D +   
Sbjct: 140 -------QSLAYQVAECNYDYYVIELSSFQLDN--MYKFHANIAVLMNITPDHLDRYDYK 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AK R+ +     ++      D    +E+ K   +      +   +       + 
Sbjct: 191 MQNYIDAKFRIIQNQTDNDAFVFWNDDPIIREELHKYGIHGQYYPFAEKREDGLAAFSEQ 250

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             ++  + +  ++E ++      L G   ++N++ A       GI  + + E L     V
Sbjct: 251 DKVYFTKPIEFNMEQEE----LALTGTHNLFNSMAAGISANIAGIRKSCIREALSDFKGV 306

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A   NS    LK+++T       V+   G D+      I 
Sbjct: 307 EHRLEKVARVRGVDYINDSKATNVNSCWYALKSMKT-----KTVLILGGKDKGNDYNEIA 361

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           G +    + +  +   N      EK+ A          +  +  +A+  A  M    + +
Sbjct: 362 GLVREKCSGLIFLGLHN------EKLHAFFDGFGLPIADVQSMKDAVDAAYRMAKNGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|326318672|ref|YP_004236344.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375508|gb|ADX47777.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 861

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 119/358 (33%), Gaps = 30/358 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +    G  +     T+T   +    ++ +        A + L+        +E + 
Sbjct: 487 LIAHLFTAHGWRTAM---TNTDGVYVNGRQIDSGDCSGPRSARNALAHPETDAAVLECAR 543

Query: 192 HGLDQHRLDGIKLIAGSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            GL +  L   +      TN+G  DH+   +  T Q     K R+  + +  +  A++ A
Sbjct: 544 GGLLREGLGFDRCQVAVVTNVGEGDHLGMNFIHTVQDVAILK-RVVVQNVAADGYAVLNA 602

Query: 249 DDAYSKEV------------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            D +   +            + R H       + G +  ++    + A  +  +  I++ 
Sbjct: 603 ADPHVAAMAPSSPGKVIFFALDRHHPVMATHRARGQRVVYVDGDHIVAAEDSWREQIAL- 661

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSR 354
            +D          FQV NA+ +      IG+    +   L             F   + R
Sbjct: 662 -RDIPLTRNGAIGFQVENAMASIAAAWGIGLPWDTIRRGLAGFVNDSDNAPGRFNVMDFR 720

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +  DY H  +++  ++  +  +   R  VV    GDR         +I     D  I
Sbjct: 721 GATVIADYGHNPDAMRALVSAVDALPGNRRSVVISGAGDRRDEDIRGQTEILGAAFDDVI 780

Query: 415 VTDDNP-RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  D   R     ++ A +  G+          E      AI  A+  L   D+ +V 
Sbjct: 781 LYQDAAQRGRADGEVMALLREGLANASRTKYIDEIRGEFAAIDAALARLQPGDLCLVL 838


>gi|224024607|ref|ZP_03642973.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
 gi|224017829|gb|EEF75841.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
          Length = 444

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 137/385 (35%), Gaps = 40/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141
           S  I ++ P+++    +    +      G++ +  ++ +TG++GK++  S +  I +++G
Sbjct: 70  SPGIPNDAPLILKLKEQGTPIISEIEFAGRYTQAKMICITGSNGKTTTTSLIYHIFKKAG 129

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L+    G      +F                    ++     +  +E SS  LD   +  
Sbjct: 130 LNVGLAGNIGQSLAF-------------------QVAKCNYDYYVIELSSFQLDN--MYK 168

Query: 202 IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    N+  DH+D +    Q Y +AK R+ +     ++      D    +E+ K  
Sbjct: 169 FHANIAVLMNITPDHLDRYGYQMQNYVDAKFRIIQNQTDADAFIFWNDDPVIQRELHKYG 228

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +      +   +       +   ++  + +  ++E ++      L G   ++N++ A  
Sbjct: 229 IHGHYYPFAEKREEGLAAFVEENKVYFTEPIAFNMEQEE----LALTGTHNLFNSMAAGI 284

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GI    + E L     V  R E V        I    A   NS    L++++T  
Sbjct: 285 SANIAGIRKECIREALNDFKGVEHRLEKVCRVRGVEYINDSKATNVNSCWYALQSMKT-- 342

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GF 439
                V+   G D+      I   +    + +  +   N +         +   G     
Sbjct: 343 ---KTVLILGGKDKGNDYNEIADLVREKCSGLIFMGLHNEK-------LHDFFDGFGLPI 392

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++  +  +A+  A +M  K + +++
Sbjct: 393 VDVQSMKDAVDAAYQMAKKGETVLL 417


>gi|331266779|ref|YP_004326409.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
 gi|326683451|emb|CBZ01069.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
          Length = 450

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               +  G + +       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEDGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T  +  
Sbjct: 109 ISD---APIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSG---NIGYPASQVAQTATAQD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH + + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +  +   ++  +   +KE+  +         +   +       +   ++ +
Sbjct: 206 AKWNI-QNKMTADDFLVLNFNQDLAKELATKTQATVVPFST--LEKVDGAYLEDGQLYFR 262

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +V ++ +         +PG   V NAL    +    G+D+ ++ E L     V  R +F
Sbjct: 263 GEVVMAAD------EIGVPGSHNVENALATIAVAKLRGVDNQIIKEILSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VD-EIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         +++  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAAEKAGVTYVDATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|225627884|ref|ZP_03785920.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|254708105|ref|ZP_05169933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M163/99/10]
 gi|254710474|ref|ZP_05172285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis B2/94]
 gi|254714467|ref|ZP_05176278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M644/93/1]
 gi|254717365|ref|ZP_05179176.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M13/05/1]
 gi|256031968|ref|ZP_05445582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M292/94/1]
 gi|260169105|ref|ZP_05755916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           F5/99]
 gi|261219196|ref|ZP_05933477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261315608|ref|ZP_05954805.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261318046|ref|ZP_05957243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261322257|ref|ZP_05961454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261758612|ref|ZP_06002321.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|265989077|ref|ZP_06101634.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
 gi|225617047|gb|EEH14093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|260924285|gb|EEX90853.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261294947|gb|EEX98443.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261297269|gb|EEY00766.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261304634|gb|EEY08131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261738596|gb|EEY26592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|264661274|gb|EEZ31535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
          Length = 467

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 86/430 (20%), Positives = 148/430 (34%), Gaps = 57/430 (13%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    +S  +     + ++ +   F+     R +       +A+TGT+GKS+  + +  I
Sbjct: 79  HPQPHWSVDLARAAGVEIIGDVELFVRE---RNHIAPDCPFIAITGTNGKSTTTALIAHI 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G      G   T                     L+           VE SS+ +D 
Sbjct: 136 IKATGRDMQLGGNIGT-------------------AILTLEPPCADRFYVVECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   NL  DH+D H + + Y   K RL          AII  DDAY + +
Sbjct: 177 A--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA----SGTAIIGIDDAYCQAI 230

Query: 257 MKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             R H AG RV+ +  +      +      +   Q   I  E    + +  L G     N
Sbjct: 231 ADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEID-EIASLEGIGSLRGAHNAQN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A   C++ G+    +   L+    +  R E VG   RG  ++V+ +  +N+ E    
Sbjct: 290 ALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG--RRGKVLFVNDSKATNA-EATAP 346

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            + +       +V         G  P  G I    A    V       E   +  A +  
Sbjct: 347 ALSSFPQNIYWIV---------GGVPKAGGINSLTAFFPRVAKAYLIGEAAAQFAATLGG 397

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDV--------LVVAGKGHETVHIVTNGEKKMSVDC 486
            +P   E  + + A   A+      D         +V+      +     N EK+     
Sbjct: 398 AVP--FEISDTLAA---AVAHAT-GDAGNDAAPEPVVLLSPACASFDQFQNFEKRGDAFR 451

Query: 487 DIIREILGLI 496
           D +  + G++
Sbjct: 452 DAVLALPGVM 461


>gi|56421350|ref|YP_148668.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261418169|ref|YP_003251851.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. Y412MC61]
 gi|297529026|ref|YP_003670301.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|319767871|ref|YP_004133372.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
 gi|68565686|sp|Q5KW36|MURC_GEOKA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56381192|dbj|BAD77100.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261374626|gb|ACX77369.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC61]
 gi|297252278|gb|ADI25724.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|317112737|gb|ADU95229.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
          Length = 434

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 127/396 (32%), Gaps = 57/396 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++  A  +   P++      +FL   A +         +AVTG+ GK++    +  + Q 
Sbjct: 75  EEIEAARQLGVPVI---RYHRFLGQLAGKF------TSIAVTGSHGKTTTTGLLAHVMQG 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +S+ IG   T             +  Y    LSY                       
Sbjct: 126 AHPTSYLIG-DGTGKGEPGSKYFVFEACEYRRHFLSYF---------------------- 162

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMK 258
                     TN+  DH DY       F+A    F+++  +   AI+   DD Y   +  
Sbjct: 163 ----PDYAIMTNIDFDHPDYFANVDDVFSA----FQQMANQVKKAIVACGDDPYLPNIQA 214

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
           +           G +  F   + +          + V    F  F  P  G   V NAL 
Sbjct: 215 KVP---ILFYGFGEENDFQ-ARNIVKTTEGMAFDVFVRNTFFASFAIPRFGTHNVLNALA 270

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              LC   G+D+  + + L+    V  RF       +   +  DYAH    +   L+  R
Sbjct: 271 VIALCHYEGVDAGTIAKRLQTFQGVKRRFSEKTVGRQ--VLIDDYAHHPREITATLEAAR 328

Query: 378 TITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIH 434
               GR +V +F                 +L  AD   + D      E   K+   ++  
Sbjct: 329 QKYPGREVVAIFQPHTYTRTQTFLREFAESLLQADHVYLCDIFGSAREHEGKLTIRDLQA 388

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH 469
            IP       +  A+         QD ++V  G G 
Sbjct: 389 QIPRSQLLEEQNVAVLK-----QHQDAVLVFMGAGD 419


>gi|294101819|ref|YP_003553677.1| UDP-N-acetylmuramate/alanine ligase [Aminobacterium colombiense DSM
           12261]
 gi|293616799|gb|ADE56953.1| UDP-N-acetylmuramate/alanine ligase [Aminobacterium colombiense DSM
           12261]
          Length = 471

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 126/363 (34%), Gaps = 35/363 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + GT GK++ +S +  I ++SGLS     PT  I     D  +               
Sbjct: 116 IGIAGTHGKTTTSSMIALILEQSGLS-----PTLAIGGELCDIGVNAKLGEGPYMVAELD 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G                  +G        TN   DH++++ T  +   A  R     
Sbjct: 171 ESDGSF----------------EGFHPNIAVLTNADWDHVNHYPTFDSVIEAFGRFLVNP 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-- 295
              +   ++  +D     ++   H     V++ G+   +              V+ SV  
Sbjct: 215 -KDDGVVVLCGEDVGLTRILDENH-LKNEVITYGWGSAWDWGAYNVEHVPGGGVSFSVAK 272

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GK  D     + G+  + NAL A  +   + +   L+ + L+       R +++G ++ 
Sbjct: 273 NGKFVDEVKLSVSGDHNIMNALAACVVADRLEVPFPLIKKTLKTFRGAKRRLQYIG-STN 331

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  IY DY H    +   L  +  +    R+ VVF                  L LAD  
Sbjct: 332 GMDIYDDYGHHPREIAATLNTLSQMFPERRLNVVFQPHRFSRTAAMYKDFADVLLLADRL 391

Query: 414 IVTDDNPRSEDPEK------IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +       E+P +      I +E+ +      I   +  +A+    E + + DV+V  G
Sbjct: 392 FLLPVYGADEEPIEGIDSNLIYSELQLRQYKNCILCSDMYDAVALLKESMEEGDVVVTVG 451

Query: 467 KGH 469
            G 
Sbjct: 452 AGD 454


>gi|94988878|ref|YP_596979.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS9429]
 gi|94992769|ref|YP_600868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS2096]
 gi|122063265|sp|Q1JAT4|MURD_STRPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063266|sp|Q1JKY4|MURD_STRPC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94542386|gb|ABF32435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS9429]
 gi|94546277|gb|ABF36324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS2096]
          Length = 452

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 108 FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 152

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 153 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +L      
Sbjct: 205 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTKATVIPFSTQKVVDGAYLNDGILY 260

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 261 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 314 LQRVG-QIKDITFYNDSKSTN--ILATKKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 369

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 370 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|163814275|ref|ZP_02205664.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759]
 gi|158449910|gb|EDP26905.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759]
          Length = 255

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 6/227 (2%)

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +      +  V    +     +S  G+       L G+F   N   AA   + +G+D 
Sbjct: 23  YDHDPADAVIGNVQMGMSGLTFELSYRGRTDTIHTNLVGKFNAENITAAALAALELGVDI 82

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
             V   +++L  +PGR  FV  N R   + +DYAH   S   + + IR+I  + R+  + 
Sbjct: 83  DTVKSSVKELF-IPGRLNFVEANGR--HVIIDYAHNHMSYSSLFRTIRSIYPTDRLTALV 139

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE- 447
           G  GD+  G+R   G++    AD  ++T+ +  SE P KI +EI   +    +   R E 
Sbjct: 140 GAMGDKAFGRRREAGQMTNVYADRVVITEQDSGSEHPAKIGSEIARYVHKLCKIVPRREA 199

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVT-NGEKKMSVDCDIIREIL 493
           AIR  ++  +  DV+V+ GKG E    V  N  +  + D +I++  L
Sbjct: 200 AIRYILDKSDPGDVIVLTGKGAEKTLRVGRNSVRPYAGDLEIVKAWL 246


>gi|56807399|ref|ZP_00365374.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Streptococcus
           pyogenes M49 591]
          Length = 243

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 18/252 (7%)

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T+        ++LTTP  + L   ++   + G+TH+ +E SS      R+ G+    G F
Sbjct: 7   TTLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVF 66

Query: 210 TNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            N+  DHI    H T + YF  K  L E         +I +   +   +  +  +     
Sbjct: 67  LNISPDHIGPIEHPTFEDYFYHKRLLMEN----SRAVVINSGMDHFSFLADQVADQ---- 118

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                +  F        I   Q  +   +G+    +   L G F   NA+ A   C+ +G
Sbjct: 119 -----EHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLG 173

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              A + + + K   VPGR E +   +   +++VDYAH  +SLE +L  +    +G++++
Sbjct: 174 ASLADIQKGIAK-TRVPGRMEVLTMTNH-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLML 231

Query: 387 VFGCGGDRDQGK 398
           + G  G++ +  
Sbjct: 232 ILGAPGNKGESN 243


>gi|78188037|ref|YP_378375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
 gi|122063240|sp|Q3ANV5|MURD_CHLCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78170236|gb|ABB27332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
          Length = 464

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 129/389 (33%), Gaps = 39/389 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TGT GK++ ++ +  +C+  G        + ++ +                   
Sbjct: 105 ARMVGITGTDGKTTTSTLIHTLCEADGKRHGY--RSYSVGNSGIPFSSMV---------- 152

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             L+ Q      +E SS+ L+  R           TN+  DH+D +    Q Y  AK R+
Sbjct: 153 --LAMQPNDVAVIELSSYQLE--RSISFHPQVSLITNITPDHLDRYGQNMQRYAEAKYRI 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT 292
           F      ++      D               CR ++ G +    + L K   + N   V 
Sbjct: 209 FMNQQAGDTFIYNQDDSMLQAAFGASQIAVPCRSVAFGLEPLTNVQLDKRRVLVNGNMVV 268

Query: 293 ISVEGKDFDFLFP--------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +         +            G+  + N L A  +  A+GI S ++ + L     V  
Sbjct: 269 VRQNDGALQPIVAVDEVLNRAFRGKHNLSNVLAAVAVGEALGIGSEVMRQALTAFGGVEH 328

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V T      I    A   N++   L+ +         ++   GG         +  
Sbjct: 329 RQELVATIDGVEWINDSKATNVNAMRQALEAVPA------PMILIAGGRDKGNNYATVSH 382

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      + I T      E  EK  A    G    I      EA+  A +     + ++ 
Sbjct: 383 LIERKVCLLIAT-----GESREK-LASFFKGKVPVIAVPTIDEAVAIAHQQAKAGESVLF 436

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +     +  +  N E++ +     +R++L
Sbjct: 437 S-PACASFDMFNNFEERGAFFKQCVRQVL 464


>gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 144

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST 152
            Q     G     +G   T
Sbjct: 120 AQALDALGQHCGIVGTLGT 138


>gi|320106152|ref|YP_004181742.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924673|gb|ADV81748.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
          Length = 452

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 148/421 (35%), Gaps = 57/421 (13%)

Query: 60  IPQAIAQGAEA------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-------LFA 106
           I + +A GA        ++      L   S  +  +TP L     R  L          A
Sbjct: 46  IAELLAMGAAVETGGHGLLTFRRQDLIVVSPGVPMDTPEL--KQVR-ALGVEMIGEVELA 102

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           SR       +++A+TG++GK++  S + +I + +G+ +   G                  
Sbjct: 103 SRFLN---GSVVAITGSNGKTTTTSLIGEILRGAGVPTLVGGNIG--------------- 144

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L        S   T   +E SS  L+   ++          N+  DH+D H T + Y
Sbjct: 145 ---LPVVEMVAESTDTTWSVLEISSFQLE--TVETFAPKIAVVLNITPDHLDRHGTFEKY 199

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCA 284
             AK R+ E   P +   ++ A+D  ++ V  +               QG F+H   +  
Sbjct: 200 AEAKTRITEMQTPAD-FLVLNAEDKPTQMVAAKTKAQIFWFSPRRPIKQGAFVHGDSILF 258

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +  +       E        PL G   V N L A   C   G+ S  + E +     V  
Sbjct: 259 LPREGG---KAEPVMPVSEIPLVGAHNVENVLAAVCACRLAGVSSEKIREGVRGFKAVDH 315

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R +FV   + G + Y D   T+  ++   K + +     ++++   G D+      +   
Sbjct: 316 RLQFVAEVA-GVKYYNDSKATN--VDATAKALASFEGNVLLIL--GGKDKGSDYTELNDL 370

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +  +  +          EKI  ++  G+           A+  A E     D +++
Sbjct: 371 LRERVVTVYTIGS------AAEKIETQL-AGVMTLKHAETLERAVALATEDAKAGDTVLL 423

Query: 465 A 465
           A
Sbjct: 424 A 424


>gi|295399713|ref|ZP_06809694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978116|gb|EFG53713.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 451

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 125/351 (35%), Gaps = 40/351 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + + ++ +         G    I   A +      +  +L   L
Sbjct: 112 APFIGITGSNGKTTTTTLIYEMLREGEKRPLLAG---NIGVAACEVAQKAEANNWLVTEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 +   +       N+   H+DYH T++AY  AK  +F
Sbjct: 169 SSFQLAG-----------------IRDFRPHISVLLNIFDAHLDYHGTKEAYAQAKANIF 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++  A++ ADD     + + +      + S   +       K   I+   +  I+
Sbjct: 212 KNQTNED-YAVVNADDELVMRLAENSCAQKV-IFSATKKLDSGAYIKDGWIYWNDEAVIA 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V          LPG+  + N L A  +    G+D+  + + L     V  R +++ T   
Sbjct: 270 VSD------IVLPGKHNLENILAAVAVAKLTGVDNKAIAKVLTTFTGVKHRLQYIAT-ID 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + + D   T+  +    + +       +I+    G DR      ++  +    A I  
Sbjct: 323 GRKFFNDSKATN--ILATQRALSAFEKDSVIL-LAGGLDRGNEFDALLPYLHNVKAIILF 379

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
                   +   KI           IE  + +E A+  A ++    DV+++
Sbjct: 380 -------GQTAAKIARVAKQAGIETIEYVDNVEKAVPVAYQLSEPGDVILL 423


>gi|313206533|ref|YP_004045710.1| udp-n-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|312445849|gb|ADQ82204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|315023526|gb|EFT36530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer RA-YM]
 gi|325336018|gb|ADZ12292.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Riemerella
           anatipestifer RA-GD]
          Length = 441

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 127/354 (35%), Gaps = 43/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GK++  S +  I + +G++   +G    I                     
Sbjct: 101 AKIVAITGSNGKTTTTSLIYHILKDNGMN---VGLGGNIG----------------KSFA 141

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRL 233
             ++ +   +  +E SS  LD   +   +       NL +DH+D Y+   + Y  AK R+
Sbjct: 142 KQVADESFDYYVLEISSFQLDD--IQNFRPYISLLLNLSQDHLDQYNYNYEEYALAKFRI 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQ 290
             E    ++  I   DD  S+++++       +V   +            +   +  + +
Sbjct: 200 -TENQEYDNFFIYNKDDEMSQKILQELDLKVKKVPFSIKETLSEGGYMNDENIVVKFQGE 258

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+ +          L G   V N+L A+     + I +  +   L     V  R + + 
Sbjct: 259 FTMKIRD------LALIGNHNVANSLAASIAGKILNISNESIRNSLMTFQAVDHRLQEI- 311

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N  G +   D   T+  +      + ++T   + +V   G D+      I   +   + 
Sbjct: 312 ANLNGVKFINDSKATN--VNATYYALESMTQPTVWIV--GGVDKGNDYTEIEELVKKKVK 367

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I  +  DN      +KI               +  EAI+ +  +    D +++
Sbjct: 368 AIVCLGIDN------QKIIDFFRDKKEFIYNTSSMEEAIKISKSIAEAGDAVLL 415


>gi|218290680|ref|ZP_03494771.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239345|gb|EED06543.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 881

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 130/381 (34%), Gaps = 29/381 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           SLF +   G+ P  I+++TGT+GK++ A  V      +G +   +G T+T   +     +
Sbjct: 470 SLFPAGSDGRIP--IVSITGTNGKTTTARLVAHGFAVAGKT---VGLTTTGGVYIGGECV 524

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYH 220
                     A   LS   V    +E +  G+ +  L       G  TNL  DH+  D  
Sbjct: 525 CRGDTTGPMSARLVLSHPRVEVAVLETARGGIVRGGLAYDVADVGVITNLSLDHVGQDGL 584

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +       K  L  E +  +   ++ ADD     +  R       V  V          
Sbjct: 585 DSIDDIAFVKA-LVGECVRDDGAVVLNADDPRVLALAPRFRAPLVLVSQVPNNPHVARHV 643

Query: 281 KV--CAIHNKQQVTISVEGK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +    A+     V    +G                     F V NA +AA    A G+  
Sbjct: 644 QAGGTAVVASDGVLYEWQGGAQRPIIGVAQIPICLGGLARFHVENAALAAAAMRAAGLPR 703

Query: 330 ALVLEHLEKLHV--VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + V + L         GR E       G R+ +DY H       + + ++ +   R + V
Sbjct: 704 STVAKALATFLPEQNTGRLEMYVLP-NGARVVLDYGHNPAGFREVGRWLQALACRRRVGV 762

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFI 440
            G  GDR        G+      D  IV +D + R   P +I   +   I          
Sbjct: 763 VGVPGDRADHVVEEAGRALAPWFDEFIVKEDADLRGRAPGEIARLLSSSIARTCPDKKVE 822

Query: 441 EKGNRIEAIRTAIEMLNKQDV 461
              +  EA   A+  L  +DV
Sbjct: 823 VILDEREAALFAVRGLGAEDV 843


>gi|330893180|gb|EGH25841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 170

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 3/173 (1%)

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +DQ R   +       TNL RDH+DYH T +AY  AK +LF          +I  DDA+ 
Sbjct: 1   MDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAFG 58

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +E+      +     S      +++ +      +  + T+     +      L G F + 
Sbjct: 59  RELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLS 118

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT 
Sbjct: 119 NVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTP 170


>gi|264676745|ref|YP_003276651.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
 gi|262207257|gb|ACY31355.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
          Length = 856

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 141/404 (34%), Gaps = 40/404 (9%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N  + +VD       LFA    G+ P  ++AVTGT+GK++    +  +    G  +  
Sbjct: 450 PRNVGVPMVD------ELFAPGDDGRIP--LVAVTGTNGKTTTTRVIAHLFTSHGWRTAM 501

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T+T   +    ++ +        A + L+        +E +  G+ +  L   +   
Sbjct: 502 ---TNTDGVYVNGRQIDSGDCSGPKSARNALAHPETDAAVLECARGGILREGLGFDRCQV 558

Query: 207 GSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              TN+G  DH+   +  T++     K R+  + +     A++ A D     V   AH  
Sbjct: 559 AVVTNVGEGDHLGLNFITTKEDVSVLK-RVIVQNVASTGYAVLNAADPL---VAAMAHVC 614

Query: 264 GCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEG--------KDFDFLFPLPGEF 310
             +V+                +    ++      ++ EG        +D          F
Sbjct: 615 PGKVIFFAADRHHPVMATHRAQGSRVVYVDGDAIVAAEGSWRESIALRDIPLTRNGTITF 674

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVDYAHTSNS 368
           QV N + + G   A G+    +   L             F   + +G  I  DY H  ++
Sbjct: 675 QVENVMASIGAAWAAGLPWQTIRRGLAGFLNDSDNAPARFNVMDYKGATIIADYGHNPDA 734

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEK 427
           +  + + +  + + R  VV    GDR         +I   + D  ++  D   R     +
Sbjct: 735 IRALSQAVEAMPAKRRSVVISGAGDRRDQDITEQTQILGKVFDDVVLYQDACQRGRVDGE 794

Query: 428 IRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + A +  G+ G        E      AI  A+  L   D+ +V 
Sbjct: 795 VLALLKKGLEGAPRTSYSTEIHGEFLAIDHALARLQPGDLCLVL 838


>gi|322391625|ref|ZP_08065094.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
 gi|321145708|gb|EFX41100.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
          Length = 450

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 126/350 (36%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + Q+   +G +    G    I   A     T      L   L
Sbjct: 112 APIVGITGSNGKTTTTTMIGQVLTAAGQNGLLSG---NIGYPASHVAQTATDKDTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 ++         TNL   HIDYH + +AY  AK  + 
Sbjct: 169 SSFQLMG-----------------IESFHPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQ 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + +   +   + +  D  +KE+ ++   +     +   +       +   ++ + +  ++
Sbjct: 212 KNMTAADYLVLNFNQD-LAKELAEKTQASVVPFST--LEKVDGAYLENGLLYFRGEAVMA 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         +PG   V NAL    +    G+D+  + E L     V  R ++      
Sbjct: 269 AD------EIGVPGSHNVENALATIAVAKIRGVDNETIKETLSAFGGVKHRLQY-ADEIN 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +++   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDIKG-LKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       +  E+++         +++  +  +A R A  +    D++++
Sbjct: 378 L------GQSAERVKRAADKAGVEYVDATDIADATRKAYHLAGTGDIVLL 421


>gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
 gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
          Length = 449

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 153/404 (37%), Gaps = 50/404 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + +VVS + SL++          I V+        +           +ILAVTGT+G
Sbjct: 63  KGIDTVVVSPSISLENILVREALARNIAVISEIELAFCI--------TKASILAVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  + + SG      G      S   D                       + +
Sbjct: 115 KTTTTKLLGLMLKNSGKKFAVAGNLGVSLSDKADLIDEK------------------SII 156

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E SS  L+   +   K  A +  N+  DH++ H T +AY  AK R+FE +  +    +
Sbjct: 157 AAEVSSFQLEF--IKNFKPKAAAILNITPDHLERHHTMEAYVQAKARIFENMNFEN-CIL 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--- 302
           + ADD Y+ E+ + A N    V     Q          A  + +++ IS +G   +    
Sbjct: 214 LNADDKYTNELTEMA-NKHTNVCLFSIQKNI----DNGAFLDGEELVISYKGNKINICNI 268

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+    NAL A+ L    GI    +   L++   +P R EFV    R  +    
Sbjct: 269 NELQIKGKQNYANALAASFLAFFSGISLEAIRAALKEFKGLPHRIEFV----RKFKDINY 324

Query: 362 YAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y  + + + +  +K +        +++   G D+       M K+     ++ ++ +   
Sbjct: 325 YNDSKATNTDASIKGMEAFDKP--VILIAGGHDKGIPLSEYMKKVKEHTKELILIGEATE 382

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           R E        I  G+       +  +A+  A +     D++++
Sbjct: 383 RFEKVA-----INEGVSNITRAKDMEDAVYKATKFAEAGDIIIL 421


>gi|171057214|ref|YP_001789563.1| UDP-N-acetylmuramate--L-alanine ligase [Leptothrix cholodnii SP-6]
 gi|229620039|sp|B1XYR4|MURC_LEPCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170774659|gb|ACB32798.1| UDP-N-acetylmuramate--alanine ligase [Leptothrix cholodnii SP-6]
          Length = 469

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 140/431 (32%), Gaps = 52/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+A+V S+A    +          I VV      L+       G    
Sbjct: 56  GHD---AAHIAGAQAVVTSTAVKGDNPEVIAARAARIPVVPRAVM-LAELMRLKSG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   +GL      PT  I                L  A +
Sbjct: 108 --IAIAGTHGKTTTTSLVTSVLAEAGLD-----PTFVIGGK-------------LNSAGA 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +     ++ VEA     D   L+ +  +    TN+  DH+D +    A        F 
Sbjct: 148 NSALGKGDYIVVEADES--DASFLNLL-PVLSVITNIDADHMDTYGHDFARLKQAFVEFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AI+  DD   + ++         V++ G                  Q+  + 
Sbjct: 205 HKMPFYGAAILCGDDPGVRSIIPMISRP---VITYGLGEDVQVRAVDVVALPGGQMRFTC 261

Query: 296 EGK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + +      D +    LPG   V NAL    +   + +  A ++  L K   V  RF+  
Sbjct: 262 QRRNGTVLPDLEITLNLPGVHSVRNALATIAVATELELPDAPIVSALAKFSGVGRRFQRW 321

Query: 350 G----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGK 404
           G           +  DY H    +  ++   R    GR +V+ F                
Sbjct: 322 GDWPCAAGGEFTLIDDYGHHPVEMAAVIAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFV 381

Query: 405 IALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             +  AD  ++T+     E P          RA  + G    +   +  E   T  E   
Sbjct: 382 KVMGSADAILLTEVYAAGEAPIVAADGRSLTRALRVAGKVDPLFVDDVNELPATIAEQAL 441

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 442 AGDVVIAMGAG 452


>gi|300021779|ref|YP_003754390.1| UDP-N-acetylmuramate/alanine ligase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523600|gb|ADJ22069.1| UDP-N-acetylmuramate/alanine ligase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 478

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 91/422 (21%), Positives = 150/422 (35%), Gaps = 51/422 (12%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+S+A      +  A  +    I+      + L+            + ++VTGT 
Sbjct: 66  GARYVVISTAVKPFNPELIAARQKGLTII---RRAEMLAELMRLY------STISVTGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I   +G     I     I+S+  + RL                      
Sbjct: 117 GKTTTTSLLSHIFTEAGEEPTVI-TGGIINSWGSNARLGQG-----------------KW 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA        RL       G  TN+  +H+DY  + +A  +     F + +P    A
Sbjct: 159 MIVEADESDGTFTRLPT---EIGIVTNIDPEHLDYFGSVEAMHHE-YEAFLKNIPFFGLA 214

Query: 245 IIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISVEG 297
           +   D    +++++R      G R+L+ G       + +         +    +T SV+G
Sbjct: 215 VACIDHPVVRDMIERLNLRADGRRLLTYGQSQDADLVLQSIRIEGNTTYFDATLTASVKG 274

Query: 298 KDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D+  P+PG     NAL A  +    G++ A +   +     V  RF+F G    
Sbjct: 275 GARKLTDWSVPIPGAHNALNALAAIAVATQAGLEDAKIKAAMAGFSGVKRRFQFTG-EWN 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  IY DY H    +  +L   R  T G++I V                      AD  I
Sbjct: 334 GVGIYDDYGHHPAEISAVLAAARGGTKGKVIAVVEPHRYTRVRDLFEDFARCFKDADHVI 393

Query: 415 VTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGK 467
           V       E P      + + A I        E  +   AI  AI+      D++V  G 
Sbjct: 394 VAPLYTAGEPPITGIDNQTLAARIATAGRRSAEAVDEPGAIAAAIKRVAGPGDIVVCLGA 453

Query: 468 GH 469
           G+
Sbjct: 454 GN 455


>gi|332522873|ref|ZP_08399125.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314137|gb|EGJ27122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 452

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 152/426 (35%), Gaps = 59/426 (13%)

Query: 55  DGHLF----IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---- 103
           DG +F      QA+   G + +  S   +L D    +    P +   N    K L+    
Sbjct: 39  DGKVFEENPAAQALLELGIKVVCGSHPLALLDEDFELMIKNPGIPYSNPMVEKALAKGIP 98

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       I+A+TG++GK++  + +  +    G S+   G     +S   
Sbjct: 99  VLTEVELAYLVSE---APIIAITGSNGKTTTTTMIADVLNHGGQSALLAGNIGYPASEV- 154

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                             L ++    + +E SS  L    +          TNL   H+D
Sbjct: 155 -----------------ALKAEAKDRLVMELSSFQLM--GVKAFHPQIALITNLMPTHLD 195

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK  + ++ + +E   I+ AD   +  +   A     +VL    + +   
Sbjct: 196 YHGSLEEYVAAKWNI-QQRMTEEDYVILNADQELTSTL---ASKTKAKVLYFSTKKEVEG 251

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                A     ++  + +         +PG   V NAL    +     I + ++ + L+ 
Sbjct: 252 -----AYLKGGKLYYNGDFIMEASSIGVPGLHNVENALATIVVAKLSHIANPVISDTLKH 306

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R ++ G        + + + ++N L    K +       +I++   G DR    
Sbjct: 307 FGGVKHRLQYAGQLQD--ITFYNDSKSTNIL-ACQKALSGFNKKNLILI-AGGLDRGNSF 362

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             ++  I        I+  +   + D  K+ AE+      +    +  +A R A +  N 
Sbjct: 363 DELVPDI--KGIKKMILIGE---TTDKMKLAAEMAE--VSYSSAKDVADATRLAFKGANA 415

Query: 459 QDVLVV 464
            D++++
Sbjct: 416 GDIILL 421


>gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 450

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 164/423 (38%), Gaps = 55/423 (13%)

Query: 48  AIVGNKEDGHL-FI---PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
           A+   + DG   +      A++QG + + +S   S +             V+ +      
Sbjct: 50  ALK-QQFDGIECYAGRLKDALSQGFDILALSPGISERRDDIIEFKQNGGRVLGDI----- 103

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              + +  +  + I+A+TG++GK++V S V  +C++ GL +   G   T           
Sbjct: 104 EIFAHIANRRGDKIIAITGSNGKTTVTSLVGHLCEKCGLDTVVAGNIGT----------- 152

Query: 164 TPSPIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                      + +   G       +E SS  L+    + ++  A +  N+  DH+D + 
Sbjct: 153 -------PVLEAEMQRGGKKAGVWVLELSSFQLEN--TESLRPSAAAVLNISEDHLDRYD 203

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
               Y + K ++F  +       ++ ADDA  + + +       +  S+  Q  +   ++
Sbjct: 204 DLLDYAHTKDKIFRGV----GVQVLNADDALCRAMKRAGRG--VKWFSLEKQADYWLERE 257

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                   ++    +        PL G     N + A  LC A+G+    +++H++    
Sbjct: 258 T------GRLKAVSDDLMNTTDIPLQGLHNAANVMAAVALCEAVGLPREELVKHIQTFKG 311

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +P R E +G   + G +++D +  +N +      I  + S    ++   G  + Q   P+
Sbjct: 312 LPHRVEKIGE--KNGVVFIDDSKGTN-VGATAAAISGLQSPLFAIL--GGLGKGQDFTPL 366

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +   +  + ++  D P      +IR ++       I+     EA++TA       D+
Sbjct: 367 AQVLRGKVKAVLLIGRDAP------QIRRDLAGAGLNLIDCATLQEAVQTAYAQAQSGDI 420

Query: 462 LVV 464
           +++
Sbjct: 421 VLL 423


>gi|294508378|ref|YP_003572436.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
 gi|294344706|emb|CBH25484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
          Length = 543

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 125/359 (34%), Gaps = 32/359 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +++ +TG+ GK+S    V ++ ++      +    +T SS+     L      +L     
Sbjct: 195 SVVGITGSYGKTSTKFIVAELLRQ------KYNVYATPSSYNTPMGLCLAVNEHLKPEHQ 248

Query: 176 YLS-SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            L    G+ +        G      D  +  A   T +G  H++   +Q      K  L 
Sbjct: 249 VLVLEYGIRYP-------GDMDELCDIAEPDASVVTTIGVAHLETMGSQDHIAAEKGVLV 301

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TI 293
           E   P + PA++  DD     + +RA     R+ + G+    I    +            
Sbjct: 302 ERTAP-DGPAVLNVDDERVAAMAERAAGPVWRISTEGHPDADITASDIRYDTGGTAFNVT 360

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G    F   L G   V N L+A  +  ++G+    +   + ++  +  R +     S
Sbjct: 361 DDTGTTVTFETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIEHRLQL---RS 417

Query: 354 RGGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----AL 407
           RG    +D A  SN +     ++ +  +  G+ ++V     +    +           A 
Sbjct: 418 RGDVTIIDDAFNSNPVGARNAVEILSEMDGGKRVIVTPGMVELGDRQWTENKDFGVVLAQ 477

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              D+ ++  +    E    I+A +  G       +   +  EA       L   DV++
Sbjct: 478 HDLDLVVLVGE----EQTAPIQAGLSEGGAPAERIMVVDSLAEAQEILERRLGPGDVVL 532


>gi|293365023|ref|ZP_06611740.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307702267|ref|ZP_07639227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|291316473|gb|EFE56909.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307624280|gb|EFO03257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
          Length = 450

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 151/444 (34%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + +       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T  +  
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSG---NIGYPASQVAQTATAKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH + + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +KE+   A      V+    Q K        A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKEL---ATKTQATVVPFSTQEKVDG-----AYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAASEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VD-EIQGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         +++  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|312111768|ref|YP_003990084.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
 gi|311216869|gb|ADP75473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
          Length = 451

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 124/351 (35%), Gaps = 40/351 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + + ++ +         G    I   A +      +  +L   L
Sbjct: 112 APFIGITGSNGKTTTTTLIYEMLREGEKRPLLAG---NIGVAACEVAQKAEANNWLVTEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 +   +       N+   H+DYH T++AY  AK  +F
Sbjct: 169 SSFQLAG-----------------IRDFRPHISVLLNIFDAHLDYHGTKEAYAQAKANIF 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++  A++ ADD     + + +      + S   +       K   I+   +  I+
Sbjct: 212 KNQTNED-YAVVNADDELVMRLAENSCAQKV-IFSATKKLDSGAYIKDGWIYWNDEAVIA 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V          LPG+  + N L A  +    G+D+  + + L     V  R +++ T   
Sbjct: 270 VSD------IVLPGKHNLENILAAVAVAKLTGVDNKAIAKVLTTFTGVKHRLQYIAT-ID 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + + D   T+  +    + +       +I+    G DR      ++  +    A I  
Sbjct: 323 GRKFFNDSKATN--ILATQRALSAFEKDSVIL-LAGGLDRGNEFDALLPYLHNVKAIILF 379

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
                   +   KI           IE  + +E A+  A  +    DV+++
Sbjct: 380 -------GQTAAKIARVAKQAGIETIEYVDNVEKAVPVAYRLSEPGDVILL 423


>gi|254419673|ref|ZP_05033397.1| Mur ligase middle domain family [Brevundimonas sp. BAL3]
 gi|196185850|gb|EDX80826.1| Mur ligase middle domain family [Brevundimonas sp. BAL3]
          Length = 468

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 134/410 (32%), Gaps = 41/410 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +++D    I +   +  V  TR    L +           + V GTSGKS
Sbjct: 69  AQTVVAT--GAIEDTVPDIGAARRVGAVIKTR--PQLLSQLFNAAPTS--VGVAGTSGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           ++   +  I  +            T  +    N     +        +     G      
Sbjct: 123 TITGMIAWILSQ------------TDRNPTVVNGAVMKNFADADHPFASALVGGPDLFVA 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E          + G        +N+  DH    ++ +   +    LF     + + A++ 
Sbjct: 171 EVDESDGS---IAGYDPTVAVVSNISLDH----KSMEELRD----LFGGFTARATTAVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+  +  +++          ++G +   +    +       +  +     ++D +  +P
Sbjct: 220 LDNPETAALVQTLPAGKAITFALGEEKADLSAYDLQPTPTGMKFRLMEGWSEYDVVLNVP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A G   A+ + +   ++ LE    +  R E VGT      +  D+AH  +
Sbjct: 280 GAHNVANALAALGAVKALDVPTGQAVKALETFAGIRRRMEVVGT-VNDITVIDDFAHNPD 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDR----------DQGKRPIMGKIALDLADIAIVTD 417
            +   LK +     GR++++F   G            D     +     L + +      
Sbjct: 339 KIAATLKTLHAF-DGRLLILFQPHGFGPLKLMKSEFIDGFAGLMRETDVLLMPEPVYYGG 397

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              RS   E I   +            R +     ++M    D ++V G 
Sbjct: 398 TTDRSVGSEDIATGVRAAGRQAEALPTRADCGDRIVQMAQSGDRIIVMGA 447


>gi|251788251|ref|YP_003002972.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya zeae Ech1591]
 gi|247536872|gb|ACT05493.1| UDP-N-acetylmuramate/alanine ligase [Dickeya zeae Ech1591]
          Length = 486

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 142/420 (33%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAIAADNPEIIAAHEARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVTSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DDA  +E++      G  + + G+     + +     +  +   T++ +GK   +    
Sbjct: 231 LDDAVIRELL---PKVGRHITTYGFSDDADVRVADYRQVGAQGLFTLARQGKPLLNVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGR 357
            PG     NA  A  +    GID   +L  L +      RF+F+G          S    
Sbjct: 288 APGRHNALNAAAAVAVATEQGIDDEAILRALARFQGTGRRFDFLGEFPLQPVNGKSGSAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      R++++F                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLML 407

Query: 417 DDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D  P  E P        +   I   G    I   +         + L   D+++V G G+
Sbjct: 408 DVYPAGEAPIPGADSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQGAGN 467


>gi|194335050|ref|YP_002016910.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris aestuarii
           DSM 271]
 gi|226711871|sp|B4S6Q8|MURC_PROA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194312868|gb|ACF47263.1| UDP-N-acetylmuramate/alanine ligase [Prosthecochloris aestuarii DSM
           271]
          Length = 464

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 136/419 (32%), Gaps = 50/419 (11%)

Query: 67  GA-EAIVVSSAYSLQ---DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           GA + +V SSA   +   +  A  +   P++  D   + L        G      + V G
Sbjct: 64  GACDVVVYSSAVRPESNVEILAAEKKGIPVIKRD---EMLGELMRFRSG------VCVAG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  + +  +   +G S   +     IS + + + +       + +A  Y  +   
Sbjct: 115 THGKTTTTAMIATMLIEAGESPTVM--IGGISDYLKGSTVVGNGKYMVIEADEYDRAF-- 170

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              +        +L  +H D + T     +A    F   +P   
Sbjct: 171 -----------------LKLTPSIAVINSLEAEHADTYATLDELRDA-FIDFANSVPFYG 212

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF- 300
             I   D    + ++        R  + G  +   +  + +    N+   ++        
Sbjct: 213 KVICCVDWPEVRRIVS---GFNRRYSTYGIDETADLMARDIRIEKNETFFSVDYMRSHLA 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF   +PG   V+NAL A  + + +G+    ++  L     +  RF+   T+  G  I  
Sbjct: 270 DFRIAVPGRHNVHNALAAIAVGLEMGLPVERLVSGLAAFSGMRRRFQIRYTSPDGPIIVD 329

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH  + ++  +K  +       +I VF                 AL  AD   +    
Sbjct: 330 DYAHHPSEVKAAVKAAKAGWPEREVIAVFQPHLYSRTADFAGEFGWALSGADRVCIAGIY 389

Query: 420 PRSEDPEK---IRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P  EDP     I  E+      + G        +  E             +++  G G 
Sbjct: 390 PAREDPRNFPGISGELVAEAARVAGASNVSFFEDGKELSAHLAGYCVPGMLMLFMGAGD 448


>gi|212712758|ref|ZP_03320886.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
 gi|212684674|gb|EEB44202.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
          Length = 472

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 152/429 (35%), Gaps = 54/429 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ +   A  +VVS+A S ++          I V+    + L+      +G      +AV
Sbjct: 58  PENVEN-ASVVVVSTAISAENPEIQAAKELRIPVIRRA-EMLAELMRYRHG------IAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++  + +  I  ++GL    +      S+          S  YL   ++     
Sbjct: 110 AGTHGKTTTTAMISGIYAQAGLDPTFVNGGLVKSAGTH---ARLGSSRYL---IAEADES 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             + +                ++ +    TN+  DH+D +Q            F   LP 
Sbjct: 164 DASFL---------------HLQPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPF 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK- 298
              A++  DD   + ++ +       + + G+ +   + + K     N+   TI+ EG  
Sbjct: 209 YGRAVMCIDDPVIRSLLPKIGR---YITTYGFSEDADVRITKYEQKGNQGFFTIAREGMP 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TN 352
           +   +   PG     NA  A  +    GID   +L  L +      RF+F+G       N
Sbjct: 266 ELTVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNYALRNVN 325

Query: 353 SRGGRI--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            + G +    DY H    ++  +K  R      RI++VF                  L  
Sbjct: 326 GKEGDVMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLGQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQD 460
            D+ ++ +     E P          +   I    +++ I  A          ++L+  D
Sbjct: 386 VDVLLMLEVYSAGEKPVPGADS--RSLCRTIRSRGQVDPIFVAEPEQVSHMLAQVLDDND 443

Query: 461 VLVVAGKGH 469
           +++V G G+
Sbjct: 444 LILVQGAGN 452


>gi|260576888|ref|ZP_05844871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
 gi|259020925|gb|EEW24238.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
          Length = 466

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 142/446 (31%), Gaps = 52/446 (11%)

Query: 61  PQAIAQGAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--P 114
            QA   G  A++ S      Y   +          + V ++   F   FA+  +      
Sbjct: 61  AQAFD-GVAALITSPGIPHLYPAPNKVIARAYEAGVPVDNDIGLFFRSFATPDWDNFETA 119

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ VTG++GKS+  + +  I + +G  +   G                         L
Sbjct: 120 PRVVCVTGSNGKSTTTALIHHILEVAGRPTQMAGNIG-------------------RGVL 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               +     V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 161 DIDPAVDGEVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHNGMGGYFAAKRRLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            E  P  +   +  D+   + +  +     A  RV+ +    K                 
Sbjct: 219 AEGGPDRAVIGV--DEVEGRYLAGQLAEGAADDRVIRISSGTKLEEFAWSVFARKGFLAE 276

Query: 293 IS----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                 V   D   +  LPG     NA  A   C ++G+   L+ +       +P R + 
Sbjct: 277 WRRGKQVASIDLRGVAGLPGAHNHQNACAAYAACRSLGVGPKLIEQAFHSFAGLPHRSQT 336

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VG  +    +    A   +S    L+    I           G  +D G + ++  +   
Sbjct: 337 VGEKAGVRFVNDSKATNVDSAAKALQAFPRIRW------IAGGMGKDGGIKALVPHLGSV 390

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                I                E+  G   +        A+  A       +V+++A   
Sbjct: 391 AKAYLI-------GHSARDFALEL--GATPYEICETMERAVAAATRDAQAGEVVLLA-PA 440

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
             +     N EK+       ++ ++G
Sbjct: 441 AASFDQYPNFEKRGEDFTARVQALIG 466


>gi|311742797|ref|ZP_07716606.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
 gi|311314425|gb|EFQ84333.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
          Length = 467

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 89/426 (20%), Positives = 152/426 (35%), Gaps = 46/426 (10%)

Query: 62  QAIAQ-GAEAIVVSSAYSLQDFSATI-----RSNTPILVVDNTRKFLSLF---ASRLYGK 112
            A+A+ GA   V   A  L   S  I     R + P + V+  R+ L L+   A      
Sbjct: 54  DALARDGAVTHVGHHADHLGGVSTVIASTAVRDDNPEI-VEALRRGLRLWPRSAGLRSVM 112

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                +AV GT GK++  + +      +G   SF IG                       
Sbjct: 113 DGHTTVAVAGTHGKTTTTAMLTCALVGAGVDPSFAIGAE--------------------V 152

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            +L   + +G   V V  +        +      A   TN+  DH+D   T++AY  A  
Sbjct: 153 ASLGANARRGTGEVLVAEADESDGAFLVY--HPAAAVVTNVDADHLDTWGTEEAYAAAFT 210

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                +       ++ ADD  ++ +   A   G  VL  G+            +   +  
Sbjct: 211 EFIGTVAE---FVVLSADDPGARALAAPAAERGLEVLLAGFADDAEVRGTDVVVDGTRST 267

Query: 292 TISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  G++        +PG+  V +AL+A    + +G D   ++  L        R + +
Sbjct: 268 FTAWRGRERLGPVELAVPGDHYVQDALMALAAGLRLGADPHGLVAGLATYTGAHRRMQPL 327

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALD 408
           G  + G R+Y  YAH    +   L   R +     +VV F                  L 
Sbjct: 328 GEVA-GVRVYDSYAHHPTEIRADLAAARQVAGDDRLVVAFQPHLVSRTRIFGAAMGAELS 386

Query: 409 LADIAIVTDDNPRSEDPE-----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            AD+ +V D     EDP+     ++ A+ + G+P  +  G   +     ++ L   D+L+
Sbjct: 387 AADLVVVADLYLAREDPDPQVGAELVADAVVGVP-VLLGGAVADLPALLLDHLRPGDLLL 445

Query: 464 VAGKGH 469
             G G 
Sbjct: 446 TLGAGD 451


>gi|229013097|ref|ZP_04170262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
 gi|229168653|ref|ZP_04296375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228614809|gb|EEK71912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228748351|gb|EEL98211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
          Length = 450

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 140/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A  +        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYSISA---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQLAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   +II 
Sbjct: 176 -----------VESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-EADYSIIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGAYIKDNALYFKGEKVVKVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L+    V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++          AIVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYF---KHVKAIVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          +A+  A       DV+++
Sbjct: 386 VRAAEKAGLDVIESVETLDDAVVKAYAHSTDGDVILL 422


>gi|257066466|ref|YP_003152722.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
 gi|256798346|gb|ACV29001.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
          Length = 462

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 135/407 (33%), Gaps = 44/407 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGKSSV 129
           ++ + A    +          + VV  TR  FL            +N +AV+G+ GKS+ 
Sbjct: 74  VIYTDAILDDNEELIAAKKLNVPVV--TRGVFLGALMRNY-----KNSIAVSGSHGKSTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I   S      I     +     + R+ +           YL ++   +     
Sbjct: 127 TSMISKILMHS-DKDATILLGGELDEMKGNVRVGSEE---------YLVTEACEYKGNIR 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +                  N+  DH+DY++      +   R +     + S  I   +
Sbjct: 177 YYY-----------PQTLIILNIDEDHLDYYKDLDDIVDT-FREYLSNQDENSMTITNLN 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
           +  ++ +                +  +           +    + +   D   F   + G
Sbjct: 225 EENNRLIFDSVKGKLITYAQENDEADYCAFNIKFDEIGRPNFDLRMRNGDVEHFELGVIG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA+ +       GID   + +++ K   +  R + +G       I  DY H  + 
Sbjct: 285 RHNINNAMASIIATYENGIDIETIRKNILKYEGLDRRMQIIG-EVDDATIMTDYGHHPSE 343

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DP- 425
           +++ L  ++  T GR+I V+                   D +D  I+TD     E  DP 
Sbjct: 344 IKVTLDALKEHTKGRLICVWQPHTYSRTKALFDDFLTCFDSSDEVIITDIYAAREKFDPS 403

Query: 426 ----EKIRAEIIHGI-PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAG 466
               + + A +  GI   +I K  +  + I   I    K D+++  G
Sbjct: 404 IHSKDVVDALVKKGINAKYIGKFEDCRDYIYKEI---KKDDLVLTTG 447


>gi|319760287|ref|YP_004124225.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039001|gb|ADV33551.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 482

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 129/369 (34%), Gaps = 42/369 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA +L +          I ++        L   +         +A+ GT GK+
Sbjct: 79  ADLVVISSAINLNNIEFQAAKRLKIPIMRRAEVLFELMRYKYG-------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   +GL    I      S   Q     +                   +  +
Sbjct: 132 TTTAMLANIYVEAGLDPTFINGAIIRSEGVQSRFGCSC------------------YFII 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA         L          TN+  DH+  +Q    +       F   LP    A+I 
Sbjct: 174 EADESDKSFLWLY---PTVEIITNIDFDHMSAYQNNYEFLKKAFVEFLNHLPVYGYAVIC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFP 305
            DD   + V+    N   ++++ G+ +   + +        K + T+ ++  K  + +  
Sbjct: 231 IDDPAIRSVLS---NVNRKIITYGFSKDADLCILNYHQYREKSKFTVLIKNKKKLEIILN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI- 358
           +PG   V NA  + G+ I  GI   ++L  +        RFE +G       N R G++ 
Sbjct: 288 IPGYHNVLNATASIGVSIEEGIPDLVILRAMLNFQGTNRRFENLGFYSLKQINGRVGKVM 347

Query: 359 -YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DY H    L   +  +R+     R+I+VF         +        L   D+ ++ 
Sbjct: 348 IVDDYGHHPTELHATIATVRSGWPDKRLIMVFQPHRFTRTCELYDSFIHVLSTVDVLLIL 407

Query: 417 DDNPRSEDP 425
           +  P  E P
Sbjct: 408 NVYPAGEKP 416


>gi|261405664|ref|YP_003241905.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
 gi|261282127|gb|ACX64098.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
          Length = 477

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 139/420 (33%), Gaps = 66/420 (15%)

Query: 69  EAIVVSSA---YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            A++V +    YS+      I    PI+            A RL       ++ +TG++G
Sbjct: 73  VALLVKNPGIPYSVPPVQKAIELEIPIVTE-------VEIAYRLCE---APMIGITGSNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  ++V ++ + +GLS    G   T                     LS  ++    H 
Sbjct: 123 KTTTTTWVGKLLENAGLSPIVAGNIGT--------------------PLSEAAATATEHD 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +            +  +       N+   H+DYH     Y  +K +LF     ++  A+
Sbjct: 163 WMVVELSSFQLKGTEAFRPRISCLLNVTETHLDYHGGMDDYVASKAKLFANQTSED-TAV 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVL-------SVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +  DD   + ++                   V     +    +      + +  I  +G+
Sbjct: 222 LNWDDPVCRNLVPYIKAHIVPFSMSESLREGVHITPPYAPGAQDSDEDCQGRRIIYTDGE 281

Query: 299 DFDFLFP------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            F           LPG F V NA+ A  + IA G+    + E L     V  R EFV   
Sbjct: 282 GFTHEIIRVENIGLPGRFNVGNAMAACAIAIAAGVAPDKLEEALSSFRGVEHRLEFVAEL 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                  V Y + S +      ++   +    +V+   G DR      ++  +   +  +
Sbjct: 342 QG-----VSYYNNSKATNSKATHMALTSFKEPVVLIAGGLDRGSDYEELIPSMQGRVKAV 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------AIRTAIEMLNKQDVLVV 464
            ++       E  EKI           I   +  E        A+R A  +    D++++
Sbjct: 397 VLL------GETREKIANAAAKAGLKDIILVDNGEDAASTLTSAVRKAAGLAESGDIVLL 450


>gi|299533120|ref|ZP_07046505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
 gi|298718897|gb|EFI59869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
          Length = 634

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 155/417 (37%), Gaps = 55/417 (13%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             +L   R    +   +L +TGT+GK++V S   Q+ +  GLS   +G    I     D 
Sbjct: 236 AFALKGLREAHGYAPKVLGITGTNGKTTVTSLTGQLLEHGGLS---VGVAGNIGPSLLDT 292

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    L +A             +E SS  LD  R  G +  A +  N+ +DH+D+H
Sbjct: 293 LSARIDAETLPQA-----------WVLELSSFQLDDCR--GFEPTAATVLNITQDHLDWH 339

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--------KRAHNAGCRVLSVG- 271
              QAY +AK  +F E    ++  ++  +D     ++        KR        +S G 
Sbjct: 340 GGMQAYADAKAHVFGE----QALMVLNREDPVVMAMLPAPVAVPGKRGKTFQRAHVSFGG 395

Query: 272 ----YQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNA 315
                 G F    +  +  +    +   + +GK+ D L            + G     NA
Sbjct: 396 DMPRRPGDFGLEVVNGMTWLVRAHEADETSKGKNADDLHIVRLMPADALRIRGRHNAINA 455

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  L    G   A +L  L +    P R + VG    G   Y D +  +N +   +  
Sbjct: 456 LSALALATGAGCTLAPLLYGLREYRGEPHRVQPVG--RVGDVEYFDDSKGTN-VGATVAA 512

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +  +     IVV   G  + Q   P+   ++  +    ++  D P       IR  +   
Sbjct: 513 LMGLGPDHRIVVILGGLGKGQDFTPLAAPVSRYVRAAVLIGQDAP------LIREALGDT 566

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               ++     +A++ A  + +  D ++++     ++ +  +   +     + +RE+
Sbjct: 567 GVTLVDAATMQDAVQQAARLAHANDAVLLS-PACASMDMFKDYADRAHQFVEAVREL 622


>gi|291296384|ref|YP_003507782.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus ruber DSM 1279]
 gi|290471343|gb|ADD28762.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus ruber DSM 1279]
          Length = 457

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 141/425 (33%), Gaps = 71/425 (16%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSV 129
            A  +   S  I+ + P LV  +T          + A  L G      L VTG+ GK++ 
Sbjct: 59  HAVDVLVASTAIKDSEPELVTAHTLGIPVWRRIQVVAEILRGGFS---LGVTGSHGKTTT 115

Query: 130 ASFVQQICQRS--------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            S +  I   +        G     IG ++ + S          S               
Sbjct: 116 TSMLASIFIAAQTDPTVLLGAELGLIGGSAKVGSGRYRIAEVDESDPLFR---------- 165

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--------DYHQTQQAYFNAKMRL 233
                               ++L     TNL  DH+        +YH + +A   A    
Sbjct: 166 -------------------FLELDVAVLTNLEADHVSPDGQARPNYHTSFEALQEAVGSF 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                   +  +IY  +   + +   A   G    S G      H K++       +  +
Sbjct: 207 -----AGRAKHVIYNGEPRWQLL--DALTQGRPRSSFGLLTGDCHAKEIALEPFGSRFEL 259

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G+        +PGE  + NAL A+   +  GI    + + L +      RFE +G  
Sbjct: 260 VWQGRSLGPVHLQVPGEHNITNALAASAAALVAGIPFEAIQQGLYQYTGASRRFEKIG-E 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I  DYAH +  L  +LK  R  T  R+  VF         +   +   AL+ AD 
Sbjct: 319 LNGALIVDDYAHNATKLFALLKAARN-TGLRVRAVFQPHRYGRSEQEWPLYAQALEQADE 377

Query: 413 AIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVV 464
            ++ D     E P ++  A+I   I   +    R         A+    +     ++++ 
Sbjct: 378 TLLLDVYAAGEAPLQLTSAQIAQRILEHLRAKGRWASYQSWESALDYLRQSAAPGELILT 437

Query: 465 AGKGH 469
            G G+
Sbjct: 438 IGAGN 442


>gi|127514383|ref|YP_001095580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
 gi|126639678|gb|ABO25321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
          Length = 443

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 139/397 (35%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS    L         +  I +V +   F    A R     P  ++ +TG++GKS
Sbjct: 67  ASQIVVSPGIPLDTAEVRAAVDMGIDIVGDVELFARALADR-----PACVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++  ++GL     G                         +  L         +
Sbjct: 122 TVTTLVGEMAAKAGLKVAVGGNIGV--------------------PVLDLLDGDHELFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I+ +  N+  DH+D +   ++Y  AK+RL+++       AI  
Sbjct: 162 ELSSFQLE--TTSSLNCISATCLNISEDHMDRYSDLESYRQAKLRLYDQ----TKLAIFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  ++       N      S G          V         T  V G        L 
Sbjct: 216 RDDLLTR------PNEPMNQNSFGLSLPEGDEWGVNHGVLVHGTTEYVAG----AQVSLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N LVA  L  + G+D A ++E  ++   +  R E VG +     +    A    
Sbjct: 266 GSHNQANLLVAMALADSAGVDKAAMVEVAKQFKGLAHRCELVGKHQGVSYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+ +        I++   G  +      + G +        ++T      +D ++
Sbjct: 326 ATIAALQGLSDHEG--QIILIAGGDGKGADFSTLRGALLGVGQ---VITL----GKDGDR 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I  +      G I   +  EA+  A ++    D++++
Sbjct: 377 IAEQ----FDGAIRVESMQEAVAQAAQLAKPGDLVLL 409


>gi|299529566|ref|ZP_07043003.1| cyanophycin synthetase [Comamonas testosteroni S44]
 gi|298722429|gb|EFI63349.1| cyanophycin synthetase [Comamonas testosteroni S44]
          Length = 856

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 141/404 (34%), Gaps = 40/404 (9%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N  + +VD       LFA    G+ P  ++AVTGT+GK++    +  +    G  +  
Sbjct: 450 PRNVGVPMVD------ELFAPGDDGRIP--LVAVTGTNGKTTTTRVIAHLFTSHGWRTAM 501

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T+T   +    ++ +        A + L+        +E +  G+ +  L   +   
Sbjct: 502 ---TNTDGVYVNGRQIDSGDCSGPKSARNALAHPETDAAVLECARGGILREGLGFDRCQV 558

Query: 207 GSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              TN+G  DH+   +  T++     K R+  + +     A++ A D     V   AH  
Sbjct: 559 AVVTNVGEGDHLGLNFITTKEDVSVLK-RVIVQNVASTGYAVLNAADPL---VAAMAHVC 614

Query: 264 GCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEG--------KDFDFLFPLPGEF 310
             +V+                +    ++      ++ EG        +D          F
Sbjct: 615 PGKVIFFAADRHHPVMATHRAQGSRVVYVDGDAIVAAEGSWRESIALRDIPLTRNGTITF 674

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVDYAHTSNS 368
           QV N + + G   A G+    +   L             F   + +G  I  DY H  ++
Sbjct: 675 QVENVMASIGAAWAAGLPWQTIRRGLAGFLNDSDNAPARFNVMDYKGATIIADYGHNPDA 734

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEK 427
           +  + + +  + + R  VV    GDR         +I   + D  ++  D   R     +
Sbjct: 735 IRALSQAVEAMPAKRRSVVISGAGDRRDQDITEQTQILGKVFDDVVLYQDACQRGRVDGE 794

Query: 428 IRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + A +  G+ G        E      AI  A+  L   D+ +V 
Sbjct: 795 VLALLKKGLEGAPRTSYSTEIHGEFLAIDHALARLQPGDLCLVL 838


>gi|306825643|ref|ZP_07458982.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432004|gb|EFM34981.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 450

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 154/444 (34%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + +       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T  +  
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTATAKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH + +AY  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEAYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +KE+  +         S   +    +L+        
Sbjct: 206 AKWNI-QNNMAAADFLVLNFNQDLAKELATKTQATVVP-FSTKEKVDGAYLENGQLYFRG 263

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + V  + E         +PG   V NAL    +    G+D+ ++ E L     V  R +F
Sbjct: 264 EVVMAASE-------IGVPGSHNVENALATIAVAKLRGVDNQIIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VD-EIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         +++  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAAEKAGVTYVDATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|269219531|ref|ZP_06163385.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211110|gb|EEZ77450.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 493

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 143/450 (31%), Gaps = 85/450 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--------KFLSLFASRLYGKHPENILA 119
           A+A++V         S+ IR + P L V   R        + L+L A         + +A
Sbjct: 70  ADAVLV--------VSSAIRESNPELAVARERSQKVLHRSQALALAARG------RDFVA 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V G  GK++ ++ +    +  GL              +                ++    
Sbjct: 116 VAGAHGKTTTSAMIAMALREVGLDPSWA------IGGSVVGAGGGSHLGGGRAFVAEADE 169

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              + ++ E                +    TN+  DH+D++ + +A+  A       LL 
Sbjct: 170 SDASFLNYE---------------PLVEVVTNVEPDHLDHYGSTEAFEEAFAEF-SRLLK 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--------------------------- 272
            +   +  AD   +  +   A + G RV++ G                            
Sbjct: 214 ADGVLVACADSPGALRMAVGAIDRGQRVVTYGRGDGPRGAAAHVRVSPVRAQSGEARQEK 273

Query: 273 ----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               + +     +  +       T             + G+  + NA  A    + +G+ 
Sbjct: 274 AASGEAEPDESPREASRPLGASGTFDDGSGPVRVDLSVVGDHNLLNAAAAWAAGVELGVG 333

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVV 387
              +   L        RFE  G    G R+  DYAH    +E  L+  R +   G + V+
Sbjct: 334 REEMASALSHFLGTGRRFELRGEAG-GVRVIDDYAHHPTEVEATLRAARAVVGDGALRVL 392

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIE 441
           F                 AL LAD  +VT      EDP      + + +++      F+ 
Sbjct: 393 FQPHLYSRTANFADRFAEALSLADDVVVTSVYAAREDPTPGVEGDLVTSKMDPARAQFV- 451

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             +R EA R         D+++  G G  T
Sbjct: 452 -PDRFEAARALAARARPGDLVMTVGAGDVT 480


>gi|303235741|ref|ZP_07322348.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella disiens
           FB035-09AN]
 gi|302484188|gb|EFL47176.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella disiens
           FB035-09AN]
          Length = 459

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 137/376 (36%), Gaps = 45/376 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK+S ++    I  +S L          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTSTSTMCAHIMHQSHLDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSDSSDYVVIEADEFDRSFHWL---RPYMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K    +I+ D       MK     G +V     +    H + +   +      +    
Sbjct: 214 IQKGGTLVIHTDLE-----MKPNVQEGVKVYEYSREKGDFHAENIRIKNGTIVFDMVSPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++  D     P    + N + A  L    G  S  + + ++    V  RF+F   N +  
Sbjct: 269 ENINDIELGQPIPINIENGIAAMALAQLSGCTSDELRKGMKSYAGVDRRFDFKIMNDQH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +    K+++ I   R I V+F            +    AL   D  ++
Sbjct: 328 VLLSDYAHHPKEILQSAKSLKEIYPDRKITVIFQPHLYSRTNDFYMDFAKALSHFDEVVL 387

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           T+  P  E+P        I   +  G+   + + + + A   A E     DVLVV G G+
Sbjct: 388 TEIYPAREEPIPGVTSALIYDNLDEGVEKQMIEKDNVVA--FAKE--RNFDVLVVLGAGN 443

Query: 470 ------ETVHIVTNGE 479
                 E   ++ + E
Sbjct: 444 LDNYMSELEKVIKDKE 459


>gi|299534670|ref|ZP_07048002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
 gi|298730043|gb|EFI70586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
          Length = 449

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 112/352 (31%), Gaps = 43/352 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + +  +  +   +    G   T++               +   L
Sbjct: 112 APFIGITGSNGKTTTTTLIFDMLSKGSKNPLIAGNIGTVA---CGVAKEANQDDIIVTEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 +   K      TNL   H+DYH T   Y  AK    
Sbjct: 169 SSFQLMG-----------------IKTFKPKIAILTNLYDAHLDYHGTFNNYAEAKFG-V 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     I  AD         ++H       S G     I   +          TI 
Sbjct: 211 TRNQDDSDYFIYNADQPIVVGYAAQSHAQKIPFSSKGRTANGISADET---------TIY 261

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G+ +       LPG+  + N L A   CI +G D   + E L     V  R +FV   
Sbjct: 262 WQGEPYMDRANIALPGKHNLENILAAVAACILVGCDKEKMEEVLATFGGVRHRTQFV-RE 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G +IY D   T+      L     + + +  V+   GG         +      +  +
Sbjct: 321 WNGRKIYNDSKATN-----CLATKSALDAFQAPVILLAGGLDRGHSFEELRPCMSHVKGV 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +   R  +  K       G+   +   N  +A++ A  M  + DV+++
Sbjct: 376 VAFGETGLRFVEFAKSC-----GVQQTVIAQNVEDAVQYAAPMSAEGDVILL 422


>gi|226943451|ref|YP_002798524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Azotobacter
           vinelandii DJ]
 gi|226718378|gb|ACO77549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azotobacter
           vinelandii DJ]
          Length = 448

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 128/350 (36%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ KS+V + V ++ + +G      G   T +                    
Sbjct: 109 APIVAITGSNAKSTVTTLVGEMARAAGRRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L   G+    +E SS  L+    + +     +  N+  DH+D +   QAY  AK R+F
Sbjct: 149 LDLLDDGIELYVLELSSFQLE--TTERLNAEVATCLNVSEDHMDRYADLQAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++  DDA S+ ++           + G          +   + ++ +   
Sbjct: 207 RG----ARQVVVNRDDALSRPLVAD----RLPCWTFGLGKPDFKGFGLLEENGEKCLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+  A +LE L++   +P R +++     
Sbjct: 259 FETLMPVRELKIRGAHNQANALAAMALGHAVGLPFAPMLETLKRFAGLPHRCQWLRDVRE 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G      A    +    ++ +    +G+++++   G  +      +   +A     + +
Sbjct: 319 VGYYDDSKATNVGAALAAIEGLGADIAGKLVLI-AGGDGKGADFSSLRRPVAEHCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  D  R        A ++ G    +  G   EA+  +  +    D +++
Sbjct: 378 LGRDAGR-------IAVVLDGAVPLVRVGTLEEAVERSASLAEAGDAVLL 420


>gi|315221960|ref|ZP_07863871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
 gi|315188926|gb|EFU22630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
          Length = 450

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 138/418 (33%), Gaps = 58/418 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
               + +G + +       L D    +    P +  DN      + A  L  K P     
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEEFELMVKNPGIRYDNP-----MVARALEKKIPVITEV 103

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     I+ +TG++GK++  + + ++    G +    G     +S           
Sbjct: 104 ELAYLISDAPIIGITGSNGKTTTTTMIAEVLTAGGQNGLLSGNIGFPASQVATTATQN-- 161

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                             + +E SS  L    ++         TNL   HIDYH + + Y
Sbjct: 162 ----------------DTLVMELSSFQLM--GIETFHPEIAVITNLMPTHIDYHGSFENY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  + ++ + K    I+  +   +KE+  +         +          K   A  
Sbjct: 204 VAAKWNI-QKNMSKSDFLILNFNQTLAKELAAKTQATVVPFSTTE--------KVDGAYL 254

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T   E         +PG   V NAL    +    GI++ ++ E L     V  R 
Sbjct: 255 EGNMLTFRGEPVMAADELGVPGSHNVENALATIAVAKLRGIENQVIKETLAGFGGVKHRL 314

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++VG  +   + Y D   T+  +    K +        +++   G DR      ++  I 
Sbjct: 315 QYVGEINH-VKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI- 369

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  + I+       E   +++         +++  +  +A + A       D++++
Sbjct: 370 QGVKKMVIL------GESAARVKRAADKAGVSYMDAADVKDATQKAFAEAQAGDIVLL 421


>gi|306829146|ref|ZP_07462336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
 gi|304428232|gb|EFM31322.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
          Length = 450

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 150/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + +       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T  +  
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSG---NIGYPASQVAQTATAKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH + + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +KE+  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKELATKTQATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAASEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VD-EIKGIKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  I I+       +  E+++         +++  +  +A R A E+  + DV++++   
Sbjct: 372 LKRIVIL------GQSAERVKRAADKAGVAYVDAKDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|323139874|ref|ZP_08074902.1| amino acid adenylation domain protein [Methylocystis sp. ATCC
           49242]
 gi|322394870|gb|EFX97443.1| amino acid adenylation domain protein [Methylocystis sp. ATCC
           49242]
          Length = 1270

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 137/411 (33%), Gaps = 42/411 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S A    +          +++    R      A  L G+   +++ V G+ GK+
Sbjct: 48  ADLVVFSPAVPRDNVELKAARERGLVI----RSRAGALADLLDGR---DVIGVAGSHGKT 100

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + A+ +  I + +G S        TI +                   S   ++       
Sbjct: 101 TTAAMLAAILEHAGFSPGF-----TIGA----AAPALGDVNARWSEGSLFVAESCEAFRA 151

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      LD ++      TN+  +H +++  +     A   + E     +   ++ 
Sbjct: 152 -----------LDHVRPAHCLVTNVDDEHSEHYGGRDRLEAAFAAMIER-TRSDGHIVLC 199

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DD +   +   A   G R ++ G+  K      ++    +         G+        
Sbjct: 200 GDDPF---LAAMAEKPGSRAVTYGFGDKSSWRADRIERGRDAVAFDAIAWGRPLGRIRLK 256

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            PG     NAL A  L  A+G         LE+   V  R+E VG  + G RI+ D+AH 
Sbjct: 257 APGAHNAANALGALALANALGAPFDAAALALERFIPVGRRWERVG-EADGVRIFDDFAHH 315

Query: 366 SNSLEMILKNIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +   L   R      G+++ +          +       AL +AD  IV   +   E
Sbjct: 316 PTEIAATLAAARDSAEAGGKVVAIVEPLSHARICRLATHYARALSMADYTIVLPVDGAGE 375

Query: 424 -DPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             P      ++H +       F       +A  T   +    DV+V  G G
Sbjct: 376 PTPADSSDALLHDVFRRSGLRFACCNGPTDAASTVAALAGPGDVVVTMGAG 426


>gi|260775365|ref|ZP_05884262.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608546|gb|EEX34711.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 486

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 154/448 (34%), Gaps = 60/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R  + G  IF+        GH      + Q A  +VVS+A + ++          + VV 
Sbjct: 62  RLAKKGATIFI--------GH--AESNVHQ-ASVVVVSTAINEENPEIKAARAARVPVVR 110

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              + L+      +G      +AV GT GK++  + V QI   + L    +      S+ 
Sbjct: 111 RA-EMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAELDPTFVNGGLVKSAG 163

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 ++         ++       + +                ++ +    TN+  DH
Sbjct: 164 TNARLGSS------RILIAEADESDASFL---------------HLQPMVSIVTNIEADH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGK 275
           +D +             F   LP    AI+  DD   +E++ R      +V++ G+ +  
Sbjct: 203 MDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELIPRISR---QVITYGFAEDA 259

Query: 276 FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            + ++  C    + + T+  +G+ + D    +PG     NA  A  +     ID   +L 
Sbjct: 260 DVRIENYCQEGQQGKFTVVRQGRANLDITLNIPGRHNALNAAAAIAVATEDDIDDESILR 319

Query: 335 HLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            +        RFE +G   T +    +  DY H    +++ +   R      R++++F  
Sbjct: 320 AMAGTQGTGRRFEHLGEFDTGNGSAMLVDDYGHHPTEVDVTIHAARNGWQDKRLVMIFQP 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI- 449
                           L+  D+ ++ D     E P  I       +   I    +I+ I 
Sbjct: 380 HRYSRTRDLYDDFANVLEQVDVLLMLDVYSAGEKP--IAGADGRALCRTIRSRGKIDPIF 437

Query: 450 --------RTAIEMLNKQDVLVVAGKGH 469
                        +L   D+++  G G 
Sbjct: 438 VSDSTTLPSVLANVLQDGDLVLTQGAGD 465


>gi|94994757|ref|YP_602855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10750]
 gi|118595696|sp|Q1J5S5|MURD_STRPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94548265|gb|ABF38311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10750]
          Length = 452

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G                P+ 
Sbjct: 108 FVSE---APIIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIG------------YPAS 152

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             + KA++         + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 153 KVVQKAIA------GDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +  ++  +    I+ A+   S  +   A      V+    Q      +L      
Sbjct: 205 AAKWMIQAQMT-ESDYLILNANQEISATL---AKTTKATVIPFSTQKVVDGAYLNDGILY 260

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +Q +  + +         +PG   + NAL    +    GI   ++ + L     V  R
Sbjct: 261 FKEQAIIAATD-------LGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + VG   +    Y D   T+  +    K +    + R+I++   G DR      ++  +
Sbjct: 314 LQRVG-QIKDITFYNDSKSTN--ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDL 369

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L L  + I+       E  E+++         ++E  +  EA   A ++    D +++
Sbjct: 370 -LGLKQMIIL------GESAERMKRAANKAEVSYLEARSVAEATELAFKLAQTGDTILL 421


>gi|110597720|ref|ZP_01386004.1| Cytoplasmic peptidoglycan synthetase-like:Cytoplasmic peptidoglycan
           synthetases-like [Chlorobium ferrooxidans DSM 13031]
 gi|110340627|gb|EAT59107.1| Cytoplasmic peptidoglycan synthetase-like:Cytoplasmic peptidoglycan
           synthetases-like [Chlorobium ferrooxidans DSM 13031]
          Length = 476

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 127/370 (34%), Gaps = 35/370 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT GK++  S V  + +  GL    +     +    ++  +       +       
Sbjct: 108 IVVAGTHGKTTTTSLVAWLLEHGGLKPGFL-----VGGIPENFSMGCRPSGRI------- 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              G      +         R   +  +       N+  DH D   + +    +  RLF 
Sbjct: 156 -EAGFFVSEGDEYDTAFFDKRSKFLLYRPDIAIINNIEFDHADIFSSLEDIKRS-FRLFV 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS 294
            L+P+    I+ +DD  + E+  +A    CRV   G +       + +   H      + 
Sbjct: 214 NLIPRNGTLIVNSDDPTAMEIASKA---FCRVERFGLKTDAEWSARNISVAHETSTFDLF 270

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+       PL G + + NAL A    +  G+    + + +        R E +GT  
Sbjct: 271 YKGELQGSITVPLFGNYNIMNALAATAAAVTAGLPFEAIAKAMPLFLRPKRRMEIIGTYP 330

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLAD 411
               +  D+AH   ++ + L+ I  + SGR +V           +     ++      A 
Sbjct: 331 GNITLIEDFAHHPTAIRVTLEAIAELYSGRRVVTCFEPRSNTTTRNIFQQELSECFGPAS 390

Query: 412 IAIVTDDN-PRSEDPEK------IRAEIIHGIPGFIEKGNRIEA-----IRTAIEMLNKQ 459
           I ++   + P    PE+      +R E+          G    A     +    + +   
Sbjct: 391 IVVMGKVHRPDRYKPEECLNTSLLREELQKQGKTVFLSGEEPGAYPDNIVHFLKQQIRDD 450

Query: 460 DVLVVAGKGH 469
           DV+VV   G+
Sbjct: 451 DVVVVLSNGN 460


>gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 265

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 19/252 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  IN V+ +S+ + A  IF AI G   DGH F+ + I + ++ IVV + + +   +  
Sbjct: 19  KKININNVTINSKEVTAKSIFFAIKGKNTDGHYFVKEVIKKRSKVIVVKNNFKVPKNNLH 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  + V +  + L  FA           + +TG+ GK+++   +    ++ G +  
Sbjct: 79  K-----FIKVRSPIRSLENFAKYQRLTSQGKFVGITGSFGKTTLKYMLSFFLEQYGKTFS 133

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                +           T  +  +    L               SS          ++  
Sbjct: 134 SPKSFNNHFGLPLSLSNTPKNSQFNIFEL-------------GMSSSREIDKLSQILRPD 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+G  H+   +  +A   AK  +    + +    ++  DD Y   + K A+N   
Sbjct: 181 IGVITNIGPAHLKNFKNLKAVCLAKAEIMNH-IQENGYIVLNKDDFYFNTLFKIANNKKL 239

Query: 266 RVLSVGYQGKFI 277
           ++++     K  
Sbjct: 240 KIITFSKSKKAN 251


>gi|312888796|ref|ZP_07748359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
 gi|311298671|gb|EFQ75777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
          Length = 461

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 130/365 (35%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S    I + +GL+    G      ++       
Sbjct: 111 EFAGRYTD---AKMICITGSNGKTTTTSLTYHILKNAGLNVGLAGNIGKSFAY------- 160

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++++   +  +E SS  LD   +   K       N+  DH+D +   
Sbjct: 161 ------------QVATEQFDYYVLEISSFMLDN--MYKFKADIAVLLNITPDHLDRYDYK 206

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGKFIHL 279
            + Y  +K R+ +     +       D    K + +R   A     S+     +G ++  
Sbjct: 207 MENYTASKFRIAQNQTAADYFIYCADDPETIKGIAEREIEAQLLTFSIEKKVERGAYLDQ 266

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           + +      +   +S+          L G+  +YN++ +      + I +  + + +E  
Sbjct: 267 QDLIINATLEHFKMSLN------KLALQGKHNIYNSMASGITSKVLDIRNKTIRDSMEDF 320

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +  R EFVG  S    I    A   NS    L+++        +++   G D+     
Sbjct: 321 QNIEHRLEFVGKISGISFINDSKATNVNSTWYALESMSN-----NVILILGGVDKGNDYN 375

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +   +   +  I  +  DN R      I       +   +   +  EA++ A  +  K 
Sbjct: 376 MLKELVKQKVKSIVCMGKDNNR------IHDAFEDDVDVIVNTSSASEAVQVAYHLATKG 429

Query: 460 DVLVV 464
           D +++
Sbjct: 430 DTVLL 434


>gi|212551067|ref|YP_002309384.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549305|dbj|BAG83973.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 466

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 149/418 (35%), Gaps = 61/418 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V++ A        T   N    +V    + L        G      + + GT GK++ +
Sbjct: 74  VVITPAIPYDHSEWTFFRNAGFNIVKRA-QLLGEITKNKKG------ICIAGTHGKTTTS 126

Query: 131 SFVQQICQR--SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           S +  + ++  +G ++F  G          +N L       L                +E
Sbjct: 127 SMIAHLLKQSSAGCNAFLGGILK-----NYNNNLLLSDTSDLI--------------VIE 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A  +    H L          T++  DH+D + T+++Y  A    F  L+ +    ++  
Sbjct: 168 ADEYDRSFHWLS---PFMAVITSVDSDHLDVYGTEKSYKEA-FEHFTFLIRRGGVLLM-- 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFL---- 303
                +E +  A +    V    Y G    ++ K       Q V I+ E   FDF+    
Sbjct: 222 -----REGIDIAPSLQEGVQHYSYSGDISKIRGKNKPDFYAQNVRINSEEIHFDFVAPNT 276

Query: 304 ------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                    P E  + N++ A  + +   + S  + + +     V  RF+F    +    
Sbjct: 277 VIKDIQLNEPIEINIVNSVAALAVALLNSVTSEELKQAMASFIGVKRRFDF-HIKTDDLV 335

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DYAH    L+  +K++RT+    R+ V+F                 +L LAD  I+ 
Sbjct: 336 LIDDYAHHPQELKSSIKSVRTLYPNRRLAVIFQPHLYSRTNDFYKEFAQSLSLADEVILL 395

Query: 417 DDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              P  E P      +I  + +      +   +  E I +  +   K DV++V G G 
Sbjct: 396 PIYPAREKPIPNVSSQIILDSLTISSKQLVNYD--ELISSVAK--QKMDVVLVIGAGD 449


>gi|229496695|ref|ZP_04390409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316592|gb|EEN82511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 452

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 139/369 (37%), Gaps = 48/369 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR   +    + A+TG++GK++  ++V  I + +G  +   G               
Sbjct: 94  EFASRYLPE-DTKVAAITGSNGKTTTVNWVTHILKTAGYDAAMCGNVG------------ 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT- 222
                        ++     +  VE SS  LD               N+  DH+D ++  
Sbjct: 141 -------FSMARLVAEDPHKYYVVEMSSFQLD--GTYKFHPNVSVLLNITPDHLDRYKHK 191

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  +KMR+ ++L   +S    + +DA+ K+ +++ H+  C +L    Q         
Sbjct: 192 FELYALSKMRITQQLGKGDSFVY-WEEDAFIKKYLEQ-HSMECTLLPFSLQ-----TSGA 244

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGE-------FQVYNALVAAGLCIAIGIDSALVLEH 335
            A++   + T+ +E +     F +P           + NA+ +A +    G+ +  + + 
Sbjct: 245 KALYESDKETLHIEAQHNLSAFSIPKRDLALVGKHNLLNAMASALVAREFGVSNEYLGKA 304

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     VP R E+V     G R   D   T+  ++     +   T+   +V+   G D+ 
Sbjct: 305 LRDFKNVPHRIEYV-AEIDGVRYINDSKATN--IQSTFYALEAQTTP--VVLILGGTDKG 359

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                I   +      +  +  DN      +K+       I    +  +  E +  A E+
Sbjct: 360 NNYSEIEDVVLSKCRALIFMGIDN------DKLHRAFDGKIDQIRDARSMDECLTHAQEL 413

Query: 456 LNKQDVLVV 464
               DV+++
Sbjct: 414 AQSGDVVLL 422


>gi|307564720|ref|ZP_07627250.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
 gi|307346648|gb|EFN91955.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
          Length = 459

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 136/378 (35%), Gaps = 49/378 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ +S    I  +S      +G T+ +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSSMCAHIMHQS-----SVGCTAFLGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSNKSDYVVIEADEFDRSFHWL---RPWMTVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II+ D       MK     G RV     +    H   V               
Sbjct: 214 IKAGGALIIHKDLE-----MKPNVQEGVRVYEYSREEGDFHADNVRIKDGTIIFDFISPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   D     P    + N++ A  +    G+    + E ++    V  RF+F   N++  
Sbjct: 269 EPIKDVELGQPIPINIENSIAAMAMAQLNGVIPNEIREGIKTYSGVDRRFDFKVKNAKH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +    K+++ + S R I V+F                 +L   D  I+
Sbjct: 328 VVLSDYAHHPKEILQSAKSLKELYSNRKITVIFQPHLYTRTRDFYKEFAYSLSFFDEVIL 387

Query: 416 TDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGK 467
           T+  P  E+P +      I   +  G+   +   +      + +  +  +  DVLV+ G 
Sbjct: 388 TEIYPAREEPIEGVTSKLIYDNLKEGVQKQMILKD------SVLSFVKSRDFDVLVILGA 441

Query: 468 GH-ETV-----HIVTNGE 479
           G+          I+ + E
Sbjct: 442 GNLNDYVSQISQIILDKE 459


>gi|254419559|ref|ZP_05033283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
 gi|196185736|gb|EDX80712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
          Length = 467

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/318 (21%), Positives = 115/318 (36%), Gaps = 36/318 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           G  A+V+S    L         +      + VV +   F     +   G+ P  ++A+TG
Sbjct: 65  GFAALVLSPGAPLTHPKPHWTVDKARAAGVPVVGDIELFARALDALPEGRRPW-VIAITG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  + +  + Q++GL+   +     I          TP  +Y+            
Sbjct: 124 TNGKSTTTALIGWVLQQAGLT---VHVGGNIGIGVLALPEPTPGAVYV------------ 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS+ LD     G    A   TN+  DH+D H   + Y  AK R+F+    +++
Sbjct: 169 ----IEVSSYQLDL--TTGFAPDAAILTNISPDHLDRHGGMEGYVAAKRRIFQS---RKT 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---- 298
              +  DD Y   + +     G  V  V  +        +        +T +  G+    
Sbjct: 220 APYVGIDDPYGFAIWQELKAEGRAVDPVSVE--RPMDDDLGMYLMDDWLTYNAGGRPAPI 277

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D      LPG     NA  A      +GI    V++ L     +  R E VG       
Sbjct: 278 VDLSKARSLPGRHNAQNAAFAFLAVNDMGIPEETVVKGLLTFPGLAHRMEAVGHIGHVRF 337

Query: 358 IYVDYAHTSNSLEMILKN 375
           I    A  +++    L +
Sbjct: 338 INDSKATNADAARQALAS 355


>gi|298252627|ref|ZP_06976421.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis 5-1]
 gi|297532991|gb|EFH71875.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis 5-1]
          Length = 520

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 141/439 (32%), Gaps = 62/439 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +          I +V  +   L+L  S   G      + V G  GK+
Sbjct: 93  ADVLVYSSAIKPSNPEIMAAHERGIKLVHRS-DILALLLSAKTG------VTVAGAHGKT 145

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +S +  I   +        P+  I    Q    T     +    +  ++    +  S 
Sbjct: 146 TTSSLLSHILTVAAAGD-LADPSYAIGGSIQAADGTVLDGGHAGNGIVMVAEADESDGSF 204

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E  S                  TN   DH+D++ + + Y  A +      +      II 
Sbjct: 205 EKYS------------PSIAIVTNAEADHLDHYGSSERYREAFVEHVSHAINN---VIIC 249

Query: 248 ADDAYSKEVMKRAHNAGC-RVLSVGYQGKF----------------IHLKKVCAIHNKQQ 290
           A+D  +++V++   +    + ++ G    +                I  +   A+  ++ 
Sbjct: 250 AEDEGARKVLEAMPDNILNKTIAYGNLDTWSMKVSSRVQKLAMFASIEHENEQAVSGREM 309

Query: 291 VTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            T+ +  K  D              +PG     NA  A    + +G++        E   
Sbjct: 310 FTLVLPEKILDEHAKCSNKVQVSLLIPGLHNALNASAAIVAAVLLGMNPEDAARSAESFR 369

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKR 399
               RF+  G    G  +  DYAH    +  +L    R  TS  + V+F           
Sbjct: 370 GASRRFDIRGC-VDGVTVVDDYAHHPTEIAALLRAARRKYTSSTLRVLFQPHLFSRTQAF 428

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEK---IRAE-IIHGIP------GFIEKGNRIEAI 449
                 +L LAD  IVT   P  E  E    I AE I+                +  EA 
Sbjct: 429 ANEFAKSLALADDVIVTGIFPAREKQEDFPNINAETIVKAAKSQNLDVKIEAVDDMREAA 488

Query: 450 RTAIEMLNKQDVLVVAGKG 468
                     DVL+  G G
Sbjct: 489 LKLTLRAKSGDVLLTVGAG 507


>gi|289168282|ref|YP_003446551.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
 gi|288907849|emb|CBJ22689.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
          Length = 450

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 149/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYSNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T     
Sbjct: 109 ISE---APIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTATDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH + + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +KE+ ++         +          K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKELARKTQATVVPFST--------QEKVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIVVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VD-EIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         +++  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|196249983|ref|ZP_03148678.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
 gi|196210497|gb|EDY05261.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
          Length = 434

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 112/341 (32%), Gaps = 49/341 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++  A  + + P++      +FL   AS+         +AVTG+ GK++    +  + Q 
Sbjct: 75  EEIEAARQLSVPVI---RYHRFLGELASKF------TSIAVTGSHGKTTTTGLLAHVMQG 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +S+ IG   T             +  Y    LSY                       
Sbjct: 126 AHPTSYLIG-DGTGKGEPGSKYFVFEACEYRRHFLSYF---------------------- 162

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMK 258
                     TN+  DH DY       F+A    F+++  +    I+   DD Y + +  
Sbjct: 163 ----PDYAIITNIDFDHPDYFANIDDVFSA----FQQMAQQVKKGIVACGDDPYLQNIQA 214

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
           +          +G +  F   + +          + V    F  F  P  G   V NAL 
Sbjct: 215 KVP---ILFYGLGEENDFQ-ARNIVKTTEGTAFDVFVRNTFFASFTIPRFGTHNVLNALA 270

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              LC   GID+  +   L+    V  RF       +   +  DYAH    +   L+  R
Sbjct: 271 VIALCHYEGIDAGTIAARLQTFQGVKRRFSEKTVGRQ--VLIDDYAHHPREIMATLEAAR 328

Query: 378 TITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
               GR +V +F                 +L  AD   + D
Sbjct: 329 QKYPGREVVAIFQPHTYTRTQTFLSEFAESLQQADYVYLCD 369


>gi|296134046|ref|YP_003641293.1| FolC bifunctional protein [Thermincola sp. JR]
 gi|296032624|gb|ADG83392.1| FolC bifunctional protein [Thermincola potens JR]
          Length = 430

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 138/385 (35%), Gaps = 43/385 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--------TISSFAQDNRLTTPSP 167
            ++ V GT+GK S  +F+  I Q +G                  TI++            
Sbjct: 40  KVVHVGGTNGKGSTTAFISGILQAAGYRVGVFTSPHLHSYTERYTINNVTISEEAMARYI 99

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHR---------------------LDGIKLIA 206
           ++L   L  +   G  H +       L                          + +  + 
Sbjct: 100 VFLKPYLDKMVEDGYEHPTEFEVCTALAFQYFYDQKVDYVVLEVGLGGAIDSTNVVVPLV 159

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGC 265
              TN+  DH+DY             +   ++     A+    D  + EV+ R A     
Sbjct: 160 SVITNVAMDHMDYLGHS---IREIAEVKAGIIKLNGLAVTAVQDPEALEVISRTARERNA 216

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA 324
           R++ V  + ++   +   +    Q   ++   + + +    L G+ Q+ NA+ A     A
Sbjct: 217 RLIEVYKEARW---EITDSSVWGQTFNLNTSNRTYKNVRISLLGQHQIVNAVTAIVTVEA 273

Query: 325 IG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
           +  +   +  + +E           +    R   + +D AH  +  + +   ++   +  
Sbjct: 274 LETLGVQIGQDAVENGMASVKWPARLEIMQRQPMVIIDGAHNVHGAKSLRNALQEVFSYD 333

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIE 441
           ++I+VFG  GD++   R  +      LA   ++T  N PR+   +K+  E+   +     
Sbjct: 334 KLILVFGMLGDKE---REKVVAELAPLAAKVVITRPNSPRAGQWDKVAEEVKKYVNDVRV 390

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  +A+ TA+++    D++ + G
Sbjct: 391 IEDIHQAVDTAVKIAEPGDLVCITG 415


>gi|197334019|ref|YP_002155024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri MJ11]
 gi|197315509|gb|ACH64956.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri MJ11]
          Length = 447

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 115/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ +S +  + +  G     +     + +F             L +
Sbjct: 89  QDRWVLAVAGTHGKTTTSSMLAWVLEECGYKPGFL-VGGVLGNF--------GESARLGE 139

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +R            NL  DH D      A       
Sbjct: 140 SMFFVVEADEYDSAFFDKRSKFVHYR-----PRTLVLNNLEFDHADIFDDLAAIQRQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P          D   ++V+++          + + G+    K +    +  Q  
Sbjct: 195 LI-RTVPSTGRIFAPKQDKPLEQVLEQG-----CWSELEFTGEDGQWKAIKLQKDGSQFD 248

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  EG+      + L G+  V NAL+       +G+   L  E L K      R E  G 
Sbjct: 249 VYFEGEKVGQVNWDLVGDHNVSNALMVVASARHVGVTPDLACEALGKFINTKRRLELKG- 307

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++++ L  +R     + I+            G        +L  
Sbjct: 308 EVNGVTVYDDFAHHPTAIDLTLNGLRNKVGDKKIIAVLEPRSSTMKLGVHKDTLAASLHA 367

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     ++           N I+A +   +      D ++V 
Sbjct: 368 ADSVYLYQ-------PDNIAWSVDDVAQQCTQPAHTHNNIDAFVDMIVNEAQPGDQILVM 420

Query: 466 GKG 468
             G
Sbjct: 421 SNG 423


>gi|310816183|ref|YP_003964147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
 gi|308754918|gb|ADO42847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
          Length = 466

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 134/411 (32%), Gaps = 50/411 (12%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120
           G   +V S      Y              + V ++   F   +A R +        ++ V
Sbjct: 66  GVRLLVTSPGIAHLYPKPHPVIAAAWAAFVPVDNDIGLFFRSYADREWDDFDIRPRVVTV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  I +  G  +   G                         L    ++
Sbjct: 126 TGSNGKSTTSALLHHILEECGRPAQLAGNIG-------------------RGVLDLPPAR 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +       TN+  DH+D H     YF AK RLF E  P 
Sbjct: 167 DGEVVVLELSSYQTDLAR--ALTPDIAVLTNMSPDHLDRHAGMGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
            +   +  D+   + +  +     G   +     G+ +          K  +T   +G+ 
Sbjct: 225 RAVIGV--DENEGRYLANQLIEGPGDDRVIFTSSGQKLESAAWSVFARKGFLTEWRKGRQ 282

Query: 299 ----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D   +  LPG     NA  A  +  ++G+    +   L     +P R + +G    
Sbjct: 283 IASIDLRQVVGLPGAHNHQNACNAYAVARSLGLGPKAIEAALHSYPGLPHRSQRIGEKDG 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +    A   +S    L+  + I     I           G  P +G +        +
Sbjct: 343 VIFVNDSKATNVDSAAKALQAFQNIR---WICGGLEKEGGLGGLLPHVGSVKKAY----V 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  D P         A  + G+   I      +A+  A       D++++A
Sbjct: 396 IGRDAPHF-------ALQLTGVEAEICTT-MGQAVAQAFADAEPGDIVLLA 438


>gi|83942754|ref|ZP_00955215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
 gi|83846847|gb|EAP84723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
          Length = 467

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 136/409 (33%), Gaps = 50/409 (12%)

Query: 68  AEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
           A  IV   +   Y   +       +  + V ++   F   FA+  +        I+A+TG
Sbjct: 68  ARLIVSPGIPHLYPAPNPVIVAAQDAGVPVDNDIGLFFQSFATLAWDNFDVVPKIIAITG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ ++ V  I + +G  +   G                         L    +   
Sbjct: 128 SNGKSTTSALVHHILKHAGRPTQLAGNIG-------------------RGVLDIEPAIDG 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 169 EVVVLELSSYQTDLAR--NLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRA 226

Query: 243 PAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VE 296
              +  D+   + +  +     A  RV+ V    K   L                   + 
Sbjct: 227 VIGV--DEPEGRFLAGQLSEGAADDRVIRVSVDRKLTGLGWQVFARKGFLSEYRGGKQIG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D   +  LPG     NA  A   C  +G    ++         +P R + VG      
Sbjct: 285 SIDLRSITGLPGAHNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQTVGEAGGVR 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   +S    L   R I        + CGG   +G    + +    +    ++ 
Sbjct: 345 FVNDSKATNVDSAVKALAAFRNIR-------WICGGLEKEGGLGSLSEPLETVRKAYVIG 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +  +      + AE+   +           A+  A+E     DV+++A
Sbjct: 398 REAAQFAMKLGVEAEVCGTMDI---------AVARAVEDAEAGDVVLLA 437


>gi|22127499|ref|NP_670922.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM 10]
 gi|45443360|ref|NP_994899.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108809536|ref|YP_653452.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua]
 gi|108810587|ref|YP_646354.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516]
 gi|145600341|ref|YP_001164417.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides
           F]
 gi|162418996|ref|YP_001607294.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Angola]
 gi|21960596|gb|AAM87173.1|AE013964_9 UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis KIM 10]
 gi|45438229|gb|AAS63776.1| UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774235|gb|ABG16754.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516]
 gi|108781449|gb|ABG15507.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua]
 gi|145212037|gb|ABP41444.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides
           F]
 gi|162351811|gb|ABX85759.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Angola]
 gi|262360674|gb|ACY57395.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis D106004]
          Length = 507

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 143/420 (34%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 95  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRYRHG------IAVAGTHGKT 147

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 148 TTTAMLSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 199

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 200 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 246

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  + K   +    
Sbjct: 247 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLN 303

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G   
Sbjct: 304 APGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAM 363

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI+++F                  L   D+ ++ 
Sbjct: 364 LVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANVLSQVDVLLML 423

Query: 417 DDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D     E P        +   I + G    I   +   A     ++LN +D+++V G G+
Sbjct: 424 DVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQGAGN 483


>gi|86609024|ref|YP_477786.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|109892749|sp|Q2JL88|MURC_SYNJB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86557566|gb|ABD02523.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 478

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 128/415 (30%), Gaps = 49/415 (11%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V SSA      + +A +     +    +    L    +R  G      + V GT GK++
Sbjct: 82  VVYSSAIRPTNPELAAALGKGLTVWHRADLLAAL---FNRRSG------IGVAGTHGKTT 132

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +G     I     + ++  + RL                     +   E
Sbjct: 133 TSSMIGYVLLSAGWDPTLI-IGGEVDAWDGNARLGKGE-----------------YWVAE 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                    RL       G  TN+  DH D++        A    F++   +    +   
Sbjct: 175 VDESDGSLVRLY---PKIGVITNIELDHPDHYADLGQVIRA----FQQYGQQSQTLVACL 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
           D      V           L+ G+       +++    +     I  +G         + 
Sbjct: 228 DCPN---VAAHLRVDVGYSLT-GHPQAQYQARQILYTASFTCAEIWEKGSLLGQLRLQVL 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  +   +G++ A++   L +      RFE  G    G     DYAH  +
Sbjct: 284 GSHNLSNALAAVAVGRQLGLEFAVIASALAQFRGAHRRFEHKGEVG-GVTFIDDYAHHPS 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV------TDDNPR 421
            +   L+  R +   R++ VF                     AD+ ++       +  P 
Sbjct: 343 EIRATLQAAR-LQQRRVVAVFQPHRHSRLAALFQDFARCFGEADVVVIVPTYGAGEPAPE 401

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             D  ++   +    P      +  +       +L   D+ V  G G     I+ 
Sbjct: 402 GSDSLRLAVAVAEHHPHVRYVSSLPQLPEVLPSVLQPGDLAVFLGAGDLNQQIIA 456


>gi|221065139|ref|ZP_03541244.1| UDP-N-acetylmuramate/alanine ligase [Comamonas testosteroni KF-1]
 gi|220710162|gb|EED65530.1| UDP-N-acetylmuramate/alanine ligase [Comamonas testosteroni KF-1]
          Length = 477

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 140/431 (32%), Gaps = 54/431 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A     G +A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAAENVAGTDAVVTSTAVQGDNPEVLAAREKKIPVVPRALM-LAELMRFKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ G  GK++  S V  +   +GL      PT  I                L  A + 
Sbjct: 108 -IAIAGAHGKTTTTSLVTSVLAEAGLD-----PTFVIGGK-------------LNSAGAN 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  ++ VEA     D   L+ +  +    TN+  DH++ +             F  
Sbjct: 149 AKLGHGDYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
            +P    AI+  D    +E++ R       V + G+          V A   + + T+  
Sbjct: 206 RMPFYGRAILCVDSPAVREILPRLARP---VTTYGFAEDAQVRAVNVRAEAGRMRFTVRR 262

Query: 296 EGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +      D + +  LPGE  V NAL A  + + + I    +L  LE    V  RF+  G 
Sbjct: 263 QNGQSYPDLEVVLSLPGEHNVLNALSAVAVAMELEISDEALLRALEGFKGVGRRFQRYGE 322

Query: 352 ----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
               +     +  DY H    +   L   R    G+ +V+ F                  
Sbjct: 323 LPAADGNMFTVIDDYGHHPVEMAATLAAARGAFPGQRLVLAFQPHRYSRTRDCFEDFVKV 382

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLN 457
           +  AD  ++ +     E P  I A     +   +    ++E +                 
Sbjct: 383 IGSADSVLLAEVYAAGEAP--IVAADGRSLARALRVAGKVEPVFVENIADMPAAIAANAQ 440

Query: 458 KQDVLVVAGKG 468
             DVL+  G G
Sbjct: 441 AGDVLLCMGAG 451


>gi|160891421|ref|ZP_02072424.1| hypothetical protein BACUNI_03871 [Bacteroides uniformis ATCC 8492]
 gi|156858828|gb|EDO52259.1| hypothetical protein BACUNI_03871 [Bacteroides uniformis ATCC 8492]
          Length = 481

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 128/382 (33%), Gaps = 42/382 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S      +G T+ +   +++              
Sbjct: 131 SSKGLCVAGTHGKTTTSTMAAHLLHQS-----HVGCTAFLGGISKNYGT----------- 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L S    +  +EA       H L          T    DH+D + T++AY  +  R 
Sbjct: 175 -NLLLSATSPYTVIEADEFDRSFHWLS---PWMSVITATDPDHLDIYGTKEAYLES-FRH 229

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +  L+      I++       +V       G    +        H + +   + +  +  
Sbjct: 230 YTTLIQPGGALILHKGLEMQADV-----QPGVTTYTYSRNEGDFHAENIRIGNGEIFIDF 284

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    +P    + N + A  L    G     + + +     V  RF+F   N
Sbjct: 285 VAPDTRINDIQLGVPVSINIENGVAAMALAHLSGATDEEIKQGMASFRGVDRRFDFKLKN 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLAD 411
            R      DYAH    +   +K++R +   + I V+F                 +L L+D
Sbjct: 345 DR-IVFLSDYAHHPAEIAQSVKSVRELYQDKKITVIFQPHLYTRTRDFYRDFADSLSLSD 403

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+T+  P  E P      + I   +  GI   I    R E + + +      +VLVV 
Sbjct: 404 EVILTEIYPAREQPIPGVTSQLIYDNLRPGIEKCIC---RKEDVLSLLAQ-KHTEVLVVL 459

Query: 466 GKGH-ETV--HIVTNGEKKMSV 484
           G G  +     I     +K   
Sbjct: 460 GAGDLDNYAPQITQLLSEKYHG 481


>gi|145588356|ref|YP_001154953.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|189029017|sp|A4SV75|MURC_POLSQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145046762|gb|ABP33389.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 478

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 137/433 (31%), Gaps = 66/433 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AEA+V+S+A +  +          I V+      L        G      +A+ GT GK+
Sbjct: 65  AEAVVISTAVAGNNPEVLAARAAKIPVIQRAVM-LGELMRLKQG------IAIAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +          + PT  I                     + L       V  
Sbjct: 118 TTTSLVASVLAE-----GDLDPTFVIGGKLNSAGAN-----------ARLGRGDFIVVEA 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           + S     Q     +       TN+  DH+D +Q   A        F + +P    A++ 
Sbjct: 162 DESDASFLQ-----LFPAMEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVAVLC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG--------K 298
            DDA  ++++         +L  G  +   I    V A   +   T+             
Sbjct: 217 IDDANVRDIIPFVSQP---ILRYGLSEDADIRASNVRADGTRMHFTVERRTVRRHGNKPG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR 354
             +    LPG   V NAL A G+   +G+    +++ L +   V  RF+  G     +  
Sbjct: 274 PLNVTLNLPGLHNVRNALAAIGIATELGVGDQAIIKALSEFSGVGRRFQRYGDIPLASGG 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADI 412
              +  DY H    +   L   R        +V      R    R   G+    L   D 
Sbjct: 334 KFTLIDDYGHHPVEMAATLAAARGAYP-DRRLVLAFQPHRFTRTRDCFGEFVQVLKNFDA 392

Query: 413 AIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAI----------------RTAIEM 455
            ++T+  P  E   KI  A+    +   +      +A+                    ++
Sbjct: 393 LVLTEVYPAGE--AKIPGADGKSLMKAALVDDKTSKALLNSAAVAFASSVAEMPEKLGQV 450

Query: 456 LNKQDVLVVAGKG 468
           L   DVL+  G G
Sbjct: 451 LKDGDVLITMGAG 463


>gi|86606524|ref|YP_475287.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. JA-3-3Ab]
 gi|109892748|sp|Q2JTH3|MURC_SYNJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86555066|gb|ABD00024.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. JA-3-3Ab]
          Length = 510

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 126/413 (30%), Gaps = 49/413 (11%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V SSA      + +A +     +    +      L A+    +     + V GT GK++
Sbjct: 96  VVYSSAIRPTNPELAAALDKGLKVWHRAD------LLAALFNHRPS---IGVAGTHGKTT 146

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +G     I                    +      + L         V+
Sbjct: 147 TSSMIGYMLLAAGWDPTLI----------------IGGEMDAWDGNARLGQGEYLVAEVD 190

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +     +    G  TN+  DH D++   +    A    F++   +    +   
Sbjct: 191 ESDGSLVR-----LYPQIGVITNIELDHPDHYANLEQVIRA----FQQYGQQSQTLVACL 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
           D       +K            G+       +++    +     I   G         + 
Sbjct: 242 DCPNVATHLKVDIGYSL----AGHPQAQYQARQILYTADCTSAEIWERGSLLGQLRLQVL 297

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  +   +G++ A++   L +   V  RFE  G    G     DYAH  +
Sbjct: 298 GSHNLSNALAAVAVGRQLGLEFAVIASALAEFRGVQRRFEVKGEVG-GVTFIDDYAHHPS 356

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---- 423
            +   L+  R +   R++ VF         K           A + ++       E    
Sbjct: 357 EIRATLRAAR-LQQRRVVAVFQPHRHSRLAKLFQDFACCFADAQVVVIVPTYGAGEAAPE 415

Query: 424 --DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
             D  ++   +    P      +  +  +    +L   D+ +  G G     I
Sbjct: 416 GSDSLRLAVSVAEHHPHVRYVSSLPQLPQVLPSILQPGDLAIFLGAGDLNQQI 468


>gi|319949906|ref|ZP_08023908.1| UDP-N-acetylmuramate--L-alanine ligase [Dietzia cinnamea P4]
 gi|319436430|gb|EFV91548.1| UDP-N-acetylmuramate--L-alanine ligase [Dietzia cinnamea P4]
          Length = 487

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 100/434 (23%), Positives = 147/434 (33%), Gaps = 54/434 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS A    D    + +    + V    + L   A           + V GT GK+S  
Sbjct: 82  VVVSKAAIPADNPELVAARAAGVPVVTRSQVLGHLARA------GRSIMVCGTHGKTSTT 135

Query: 131 SF-VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S  +  +       SF +G   T+  F  + R                 +  V     + 
Sbjct: 136 SMLIAGMLSAGSDPSFAVG--GTVLQFGTNARGG---------------ADPVFVAEADE 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S   L  +     +      TN   DH+D+  T +AY+      F   +P     ++  D
Sbjct: 179 SDGSLVHY-----EPDVVILTNAEPDHLDHFGTAEAYYEV-FDTFLARIPDTGALVVCVD 232

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDF-D 301
           D  + E  +RA  AG RV+                 L  +    +  +  ++++G    D
Sbjct: 233 DEGAAERARRAAAAGVRVVGYRTADGPTTDLPVAGELAGITVDSDGTRARLTLDGGSHGD 292

Query: 302 FLFPLPGEFQVYNALVAAG----LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-- 355
                PGE    NAL A      +  A G D+   L  L     V  RFE  G    G  
Sbjct: 293 LHVGTPGEHMALNALAALLAAREVAGAGGFDADGFLAGLSGFGGVGRRFEPKGEAVVGEG 352

Query: 356 -GRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             R+Y DYAH    +  +L   R I     GR++ VF                 AL LAD
Sbjct: 353 RARVYDDYAHHPTEVAAVLGAAREIVEADGGRLVAVFQPHLYSRTRIFAEEFGRALSLAD 412

Query: 412 IAIVTDDNPRSEDPEKIRA--EIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +V D     E PE       I   +   +    +   A+ T   +L   DV+   G G
Sbjct: 413 EVVVLDVYGARERPEPGVDGGLIARNVTAAVHHVPDLDSALTTVTGILRPGDVVFTLGAG 472

Query: 469 HETV---HIVTNGE 479
             T     IV  GE
Sbjct: 473 DITTLGPRIVAGGE 486


>gi|148244841|ref|YP_001219535.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166224747|sp|A5CW53|MURC_VESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146326668|dbj|BAF61811.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 469

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 144/416 (34%), Gaps = 45/416 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+A+V+SSA    +          I +V    + L+      +G      +A+ GT GK+
Sbjct: 72  AQAVVISSAIKDNNPEVIKAHQLNIPIVPRA-EMLAELMRFRFG------IAIAGTHGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I         ++ PT  I      + +       L ++   ++    +  S 
Sbjct: 125 TTTSIITHILN-----MAELDPTYIIGGILNSSGINAK----LGESDYLIAEADESDASF 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                 L               TN+  +H+  +             F   LP     II 
Sbjct: 176 LHLQSMLS------------VITNIDHEHMATYNNDYQKLKDAFVSFSANLPFYGTCIIC 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE--GKDFDFLF 304
            DD    E++   H     +++ G+  G  I    +  +  +    I  +   K F    
Sbjct: 224 IDDKGVNEILSDIHRP---IITYGFNNGADIQAINIKQVDMQMHFDIIYDKYTKPFPIKL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD 361
            L G+  + N L A G+C  + I   ++ + L     V  R ++ G    N+    ++ D
Sbjct: 281 NLIGKHNILNTLAAIGICCELNIKVNIIQKALANFSGVARRLDYHGKLNINNLQISLFDD 340

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    +  + ++++ T  + R++V+F                  L  AD  I+ D  P
Sbjct: 341 YGHHPKEISAVFESLKDTYQNKRLVVIFQPHRYSRTHDLFDNFTRILSTADALILLDIYP 400

Query: 421 RSEDP------EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E P        +   I        +   N+ + +     +++  DVL+  G G 
Sbjct: 401 AQEKPIAHINSSTLADAIRKYSSLNPVVIKNQKKILDILPNIVHNNDVLLTLGAGD 456


>gi|323343872|ref|ZP_08084099.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
 gi|323095691|gb|EFZ38265.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
          Length = 443

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 134/355 (37%), Gaps = 45/355 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G   + +G    I                  ++L
Sbjct: 102 AKMICITGSNGKTTTTSLIYHIFKTAG---YDVGLAGNIG-----------------RSL 141

Query: 175 S-YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMR 232
           +  ++ +   +  +E SS  LD   +           N+  DH+D ++   Q Y +AKMR
Sbjct: 142 ALQVAEEPHEYYIIELSSFQLDN--MYKFHANIAILLNITPDHLDRYEYCMQHYVDAKMR 199

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + +    ++S      DD   K  +++   H   C    +  +G   ++++      K  
Sbjct: 200 IIQNQTKQDSFIYWN-DDPIIKHELEKYDIHAVKCPFSELKEKGSIGYIEEGQYKIEKP- 257

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                          L G+  +YN+L A       GI   ++ + L     V  R E V 
Sbjct: 258 ----TPFNMEQEELSLTGKHNIYNSLAAGIASNISGIKKDIIRKSLSDFPGVEHRLEKVC 313

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               GG  Y++ +  +N ++     + ++ +  I+++   G D+      I   +     
Sbjct: 314 --KVGGVQYINDSKATN-VDACWYALESMKTPTILIL--GGKDKGNDYSSIKELVRKKCV 368

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  +  DN       K+       GIP   +  +  + ++   +M    D +++
Sbjct: 369 GLVYLGADNT------KLHQNFDSLGIP-VRDTHSMEDCVKACYDMAKPGDTVLL 416


>gi|138896357|ref|YP_001126810.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|166224692|sp|A4IRW1|MURC_GEOTN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134267870|gb|ABO68065.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 434

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 112/341 (32%), Gaps = 49/341 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++  A  + + P++      +FL   AS+         +AVTG+ GK++    +  + Q 
Sbjct: 75  EEIEAARQLSVPVI---RYHRFLGELASKF------TSIAVTGSHGKTTTTGLLAHVMQG 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +S+ IG   T             +  Y    LSY                       
Sbjct: 126 AHPTSYLIG-DGTGKGEPGSKYFVFEACEYRRHFLSYF---------------------- 162

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMK 258
                     TN+  DH DY       F+A    F+++  +    I+   DD Y + +  
Sbjct: 163 ----PDYAIITNIDFDHPDYFANIDDVFSA----FQQMAQQVKKGIVACGDDPYLQNIQA 214

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
           +          +G +  F   + +          + V    F  F  P  G   V NAL 
Sbjct: 215 KVP---ILFYGLGEENDFQ-ARNIVKTTEGTAFDVFVRNTFFASFTIPRFGTHNVLNALA 270

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              LC   GID+  +   L+    V  RF       +   +  DYAH    +   L+  R
Sbjct: 271 VIALCHYEGIDAGTIAARLQTFQGVKRRFTEKTVGRQ--VLIDDYAHHPREIMATLEAAR 328

Query: 378 TITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
               GR +V +F                 +L  AD   + D
Sbjct: 329 QKYPGREVVAIFQPHTYTRTQTFLSEFAESLQQADYVYLCD 369


>gi|322834419|ref|YP_004214446.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
 gi|321169620|gb|ADW75319.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
          Length = 495

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 149/447 (33%), Gaps = 67/447 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 83  ASVVVVSTAISSDNPEIVAAREARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  +L   ++       + +  
Sbjct: 136 TTTAMVTSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRFL---IAEADESDASFL-- 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 188 -------------HLQPMVAIVTNIEADHMDTYQGDFEILKQTFINFLHNLPFYGRAVMC 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   +E++ R         + G+ +   + ++    +  +   T+  +          
Sbjct: 235 IDDPVIRELIPRVGRHMT---TYGFSEDADVIIENYRQVGAQGHFTLRRQDLPLISVTLN 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRG----GR 357
            PG     NA  A  +     I    +L  L        RF+F+G     N  G      
Sbjct: 292 APGRHNALNAAAAVAVATDENISDDAILRALAGFQGTGRRFDFLGEYALENVNGKTGSAM 351

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R    + R++++F                  L   D+ I+ 
Sbjct: 352 LVDDYGHHPTEVDATIKAARAGWANKRLVMIFQPHRYTRTRDLYDDFANVLSQVDVLIML 411

Query: 417 DDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
           D  P  E P            IRA    G    I   + IEA+  +  ++L   D+++V 
Sbjct: 412 DVYPAGEAPIPGADSRSLCRTIRA---RGKLDPILVSD-IEAVPESLAQILEGDDLVLVQ 467

Query: 466 GKG----------HETVHIVTNGEKKM 482
           G G           + +  V  GE+  
Sbjct: 468 GAGNVGRVARKLADQKLQPVKKGEEHH 494


>gi|160901141|ref|YP_001566723.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
 gi|160366725|gb|ABX38338.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
          Length = 875

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 143/403 (35%), Gaps = 38/403 (9%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N  + +VD       LFA    G+ P  ++AVTGT+GK++    +  +    G  +  
Sbjct: 466 PRNVGVPMVD------ELFAPGQDGRIP--LVAVTGTNGKTTTTRLIAHLFTSHGWRTAM 517

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T+T   +    ++ +        A + L+        +E +  G+ +  L   +   
Sbjct: 518 ---TNTDGVYVNGRQIDSGDCSGPRSARNALAHPETDAAVLECARGGILREGLGFDRCQV 574

Query: 207 GSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM------ 257
              TN+G  DH+   Y  T +     K R+  + +  +  A++ A D     +       
Sbjct: 575 AVVTNVGAGDHLGLNYITTVEDVAVLK-RVIVQNVATDGYAVLNAADPLVAAMASTSPGK 633

Query: 258 ------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                  R H       + G +  ++    + A  +  + TI++  ++          FQ
Sbjct: 634 VIYFAADRHHPVMATHRAQGNRVVYVDGDSIVAAESSWRETIAL--REIPITRNGTISFQ 691

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSL 369
           V N + A      +G+    +   L             F   + RG  +  DY H  +++
Sbjct: 692 VENVMAAIAAAWGVGMPWQTIRRGLAGFVNDSDNAPGRFNVMDYRGATLIADYGHNPDAI 751

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI 428
             +++ +  + + R  VV    GDR         +I     D  I+  D   R     ++
Sbjct: 752 RALVQAVDAMPAQRRSVVISGAGDRRDQDITEQTQILGKAFDDVILYQDACQRGRADGEV 811

Query: 429 RAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A +  G+ G        +      AI  A+  L   D+ +V 
Sbjct: 812 LALLQQGLQGAPRTDYVTQIQGEFNAIDHALARLTPGDLCLVL 854


>gi|296112510|ref|YP_003626448.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|295920204|gb|ADG60555.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|326564127|gb|EGE14365.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           46P47B1]
 gi|326564829|gb|EGE15037.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           12P80B1]
 gi|326566496|gb|EGE16643.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           103P14B1]
 gi|326568016|gb|EGE18108.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC7]
 gi|326570680|gb|EGE20714.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC1]
 gi|326571236|gb|EGE21259.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC8]
 gi|326573081|gb|EGE23054.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis CO72]
 gi|326577221|gb|EGE27114.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           101P30B1]
 gi|326577784|gb|EGE27656.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis O35E]
          Length = 486

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 151/439 (34%), Gaps = 56/439 (12%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH      I   A+ +VVSSA   Q+    A ++++ P++   +    L     
Sbjct: 68  GVTVHVGHD--ASNIKM-ADVVVVSSAIDRQNPEIRAALKAHIPVVRRAD---MLGELMR 121

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             +G      +AV G  GK++  S +  +   +GL      PT  I              
Sbjct: 122 YRHG------IAVAGAHGKTTTTSLLTMMLTEAGLD-----PTYVIGGKLN--------A 162

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                AL             +AS   L        + +A   TN+  DH++ ++      
Sbjct: 163 SGKNAALGASRYLVAEADESDASFLSL--------RPMACVVTNIDEDHMETYEGSFDKL 214

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIH 286
                 F   +P    A++  DD   KE+     +    V++ G +    +    V A  
Sbjct: 215 KQAYVQFLHNMPFYGLAVLCGDD---KELYAMIDDIARPVITYGLEKHNDVQAVDVIADG 271

Query: 287 NKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            K   T +  + K       +PG   VYNAL A  +    G+    + + +EK   V  R
Sbjct: 272 TKTHFTVLRKDKKPLPITLNIPGIHNVYNALGAITMATDEGVSDKAICQAVEKFAGVGRR 331

Query: 346 FE-----FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
           FE      +   S    +  DY H    + M +K  R +    R++++F           
Sbjct: 332 FENNGSYPLTDGSGDVVLIDDYGHHPTEIAMTIKAARQSYPDRRLVMMFQPHRYSRTRDC 391

Query: 400 PIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIPG------FIEKGNRIEAIRT 451
                  L   D  I+ D     E+        ++   +         +   N  E I  
Sbjct: 392 FSEFVNVLSQVDKLILLDVYSAGEELIKGATSNDLARSLRERGQVEPIVLNVNDKEQITQ 451

Query: 452 AIEM-LNKQDVLVVAGKGH 469
            +++ LN  D+L+  G G+
Sbjct: 452 VLKITLNANDLLMTQGAGN 470


>gi|153949929|ref|YP_001402343.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           IP 31758]
 gi|165928218|ref|ZP_02224050.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937849|ref|ZP_02226410.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008796|ref|ZP_02229694.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211992|ref|ZP_02238027.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401224|ref|ZP_02306724.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422021|ref|ZP_02313774.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426494|ref|ZP_02318247.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025732|ref|YP_001722237.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           YPIII]
 gi|186894045|ref|YP_001871157.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           PB1/+]
 gi|270487851|ref|ZP_06204925.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27]
 gi|294502644|ref|YP_003566706.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003]
 gi|152961424|gb|ABS48885.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           IP 31758]
 gi|165914261|gb|EDR32877.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919829|gb|EDR37130.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992135|gb|EDR44436.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206738|gb|EDR51218.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960158|gb|EDR56179.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049249|gb|EDR60657.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054592|gb|EDR64400.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752266|gb|ACA69784.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           YPIII]
 gi|186697071|gb|ACC87700.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           PB1/+]
 gi|262364621|gb|ACY61178.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis D182038]
 gi|270336355|gb|EFA47132.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27]
 gi|294353103|gb|ADE63444.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003]
          Length = 500

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 143/420 (34%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 88  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRYRHG------IAVAGTHGKT 140

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 141 TTTAMLSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 192

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 193 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 239

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  + K   +    
Sbjct: 240 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLN 296

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G   
Sbjct: 297 APGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAM 356

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI+++F                  L   D+ ++ 
Sbjct: 357 LVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANVLSQVDVLLML 416

Query: 417 DDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D     E P        +   I + G    I   +   A     ++LN +D+++V G G+
Sbjct: 417 DVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQGAGN 476


>gi|154249900|ref|YP_001410725.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153836|gb|ABS61068.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 451

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 123/336 (36%), Gaps = 44/336 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P    AVTGT GKS+  S +       G   +             + R            
Sbjct: 106 PFRGFAVTGTDGKSTTTSMLANSLIDLGADPYVFLGALHNKLEHGNYRHGKSD------- 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   +    ++ S  G +  R + +       TN+  DH++ +Q+ + Y+++    
Sbjct: 159 --------IAVYELDESQPGYELFRPEFL-----IITNIREDHVENYQSLEHYYSS---- 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           FE L+      + +AD+   K             ++ G       L +       Q VTI
Sbjct: 202 FETLIKNSKFVVTFADEKKFK-----------GNVTFGVYSGDFKLVERKQEGFYQTVTI 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352
                +  F  P+PG     NAL    L  +IG +   VL+  E   +   RF     N 
Sbjct: 251 FTPYGERKFFLPVPGYHNALNALAVISLLSSIGYNIDKVLDSFEDFRLPGRRFNVSYDNP 310

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLAD 411
           SR   I  DYAHT++ +E++LK  R +   R IV +F         +     K  L  AD
Sbjct: 311 SRKITIVDDYAHTADEIEVLLKTSREVYPERKIVLIFQPHRYTRFKREAERFKRILQSAD 370

Query: 412 IAIVTDDNPRSE-----DPEKIRAEIIHGIPGFIEK 442
              +T+     E       + I +EI   I  F+EK
Sbjct: 371 EIYITEIYGAFETKNGVTAKNIVSEIAKAI--FVEK 404


>gi|163941652|ref|YP_001646536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           weihenstephanensis KBAB4]
 gi|226711883|sp|A9VU74|MURD_BACWK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|163863849|gb|ABY44908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 450

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 140/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A  +        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYSISA---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQLAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   +II 
Sbjct: 176 -----------VESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ETDYSIIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGAYIKDNALYFKGEKVVKVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L+    V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++          AIVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYF---KHVKAIVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          +A+  A       DV+++
Sbjct: 386 VRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 422


>gi|315612789|ref|ZP_07887700.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314899|gb|EFU62940.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
          Length = 450

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 138/416 (33%), Gaps = 54/416 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + +       L D    +    P +   N    K L+           A  
Sbjct: 49  AQSLLEEGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T  +  
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTATAKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH + + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKDLASKTQATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAASEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSSFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    +G + Y D   T+  +    K +        +++   G DR      ++  I   
Sbjct: 317 VD-EIQGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L  + I+       +  E+++         +++  +  +A R A E+  + DV+++
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|271502041|ref|YP_003335067.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
 gi|270345596|gb|ACZ78361.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
          Length = 486

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 143/420 (34%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAIAADNPEIIAAHEARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVTSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DDA  +E++      G  + + G+ +   + +     +  +   T++ +GK   +    
Sbjct: 231 LDDAVIRELL---PKVGRHITTYGFSEDADVRVADYRQVGAQGLFTLARQGKPLLNVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGR 357
            PG     NA  A  +    GID   +L  L +      RF+F+G          S    
Sbjct: 288 APGRHNALNAAAAVAVATEEGIDDEAILRALVRFQGTGRRFDFLGEFPLQPVNGKSGSAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      R++++F                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLML 407

Query: 417 DDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D  P  E P        +   I   G    I   +         + L   D+++V G G+
Sbjct: 408 DVYPAGEAPIPGADSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQGAGN 467


>gi|52425721|ref|YP_088858.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia
           succiniciproducens MBEL55E]
 gi|59798187|sp|Q65RY7|MURC_MANSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52307773|gb|AAU38273.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 480

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 135/413 (32%), Gaps = 40/413 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +          I V+    +   + A  +  +H    +AV GT GK+
Sbjct: 82  ASVVVVSSAIKADNVEVVAAHEKRIPVI----QRAQMLAEIMRFRHG---IAVAGTHGKT 134

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I  ++GL    +      S+    +   +         ++       + +  
Sbjct: 135 TTTAMISMIYAQAGLDPTFVNGGLVKSAGTNAHLGCS------RYLIAEADESDASFL-- 186

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +             F   LP    +++ 
Sbjct: 187 -------------HLQPMVSVVTNIEPDHMDTYHGDFDEMKRTYVNFLHNLPFYGLSVMC 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD    E++ +             +  +                I+  G+  D L  +P
Sbjct: 234 ADDPVLLELIPQV-GRPVITYGFSEEADYRIENYEQTGFQGHYSVITPAGERIDVLLNVP 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAH 364
           G+    NA  A  +    GI++  +L  L        RF+ +G+    +    +  DY H
Sbjct: 293 GKHNALNATAALAVAKEEGIENEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGH 352

Query: 365 TSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + + ++  R     + IV +F                  L   D+ I+ D  P  E
Sbjct: 353 HPTEVNVTIQAARKGWENKRIVMIFQPHRYSRTRDLFDDFVRVLSQVDLLIMLDVYPAGE 412

Query: 424 DP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P        +   I + G    I   +  E       +L   D+++  G G+
Sbjct: 413 SPIAGADSRSLCRSIRNLGQVDPILVTDTAELPEIMDRVLQDGDLVLAQGAGN 465


>gi|326561546|gb|EGE11889.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis 7169]
          Length = 486

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 147/421 (34%), Gaps = 52/421 (12%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVSSA   Q+    A ++++ P++   +    L       +G      +AV G  G
Sbjct: 83  ADVVVVSSAIDRQNPEIQAALKAHIPVVRRAD---MLGELMRYRHG------IAVAGAHG 133

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +   +GL      PT  I                   AL           
Sbjct: 134 KTTTTSLLTMMLTEAGLD-----PTYVIGGKLN--------ASGKNAALGASRYLVAEAD 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             +AS   L        + +A   TN+  DH++ ++            F   +P    A+
Sbjct: 181 ESDASFLSL--------RPMACVVTNIDEDHMETYEGSFDKLKQAYVQFLHNMPFYGLAV 232

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVT-ISVEGKDFDFL 303
           +  DD   KE+     +    V++ G +    +    V A   K   T +  + K     
Sbjct: 233 LCGDD---KELYAMIDDIARPVITYGLEKHNDVQAVDVIADGTKTHFTVLRKDKKPLPIT 289

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-----FVGTNSRGGRI 358
             +PG   VYNAL A  +    G+    + + +EK   V  RFE      +   S    +
Sbjct: 290 LNIPGIHNVYNALGAITMATDEGVSDKAICQAVEKFAGVGRRFENNGSYPLTDGSGDVVL 349

Query: 359 YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    + M +K  R +    R++++F                  L   D  I+ D
Sbjct: 350 IDDYGHHPTEIAMTIKAARQSYPDRRLVMMFQPHRYSRTRDCFSEFVNVLSQVDKLILLD 409

Query: 418 DNPRSED--PEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
                E+        ++         +   +   N  E I   +++ LN  D+L+  G G
Sbjct: 410 VYSAGEELIKGATSNDLARSLRERGQVEPIVLNVNDKEQITQVLKITLNANDLLMTQGAG 469

Query: 469 H 469
           +
Sbjct: 470 N 470


>gi|326797499|ref|YP_004315318.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
 gi|326548263|gb|ADZ76648.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
          Length = 454

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 109/364 (29%), Gaps = 48/364 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--------PENILAVTG 122
            V     SL  ++  +  +       +   F      RLY +             +AV G
Sbjct: 70  FVEDREGSLVIYTPAVPKDL------DLVAFFQRLGYRLYKRSEILGKISESHFTIAVAG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++ +S +  I   SG            S+F         + + LA +  ++     
Sbjct: 124 THGKTTTSSMIAHILTSSGRPC---------SAFLGGIAANYNTNLLLADSDLFVVEADE 174

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              S               +       T    DH+D +   +    +  RLF   + K+ 
Sbjct: 175 FDRSFLT------------LHPNIAVVTATDPDHLDIYGDSEHMLES-FRLFVNQVAKDG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                      + + +  H       +V  +                   +      FD 
Sbjct: 222 K----------RIIKEGLHLPTDIRYAVEKRADVYATNIQIRNKCFYFDYLGYNKSIFDI 271

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+  + NA+ A  +   +G+D   +   L     V  RFE++  N        DY
Sbjct: 272 KLGIAGKHNIENAVAAITVAKLLGVDDEAISGSLASFKGVKRRFEYI-VNREDQVYVDDY 330

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH    L   L  ++ +     I  VF                  L LAD+ ++ D  P 
Sbjct: 331 AHHPEELRACLSAMKELYGDKEITCVFQPHLFTRTRDFVDEFAEVLGLADVLLLMDIYPA 390

Query: 422 SEDP 425
            E P
Sbjct: 391 REQP 394


>gi|110598580|ref|ZP_01386848.1| UDP-N-acetylmuramate--alanine ligase [Chlorobium ferrooxidans DSM
           13031]
 gi|110339814|gb|EAT58321.1| UDP-N-acetylmuramate--alanine ligase [Chlorobium ferrooxidans DSM
           13031]
          Length = 471

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 143/429 (33%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGK 112
           GH    Q  A   + +V SSA   ++    I   ++  P++  D   + L        G 
Sbjct: 57  GHR-AEQVTA--CDVVVYSSAIRQEENVEIIAARKAGIPVIKRD---EMLGELMRYKSG- 109

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                + ++GT GK++  + +  +   SG S     PT  I   +   +           
Sbjct: 110 -----ICISGTHGKTTTTAMIATMLIESGES-----PTVMIGGISDYLKG---------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S +  +G  ++ +EA     D+  L  +        +L  +H+D + T      A   
Sbjct: 150 --STVVGEG-KYMVIEADEF--DRAFLK-LTPTIAIVNSLESEHMDTYGTLDDLKQA-FI 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
            F   +P     I   D    ++++           + G +    +    +     +   
Sbjct: 203 AFANKVPFYGRVICCVDWPEIRKIIPSLDRVYT---TFGIEEPADVMAYDIVLEKQRSTF 259

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+   G ++ D    +PG   V NAL A    + +GI    ++  L     +  RF+   
Sbjct: 260 TVRAFGIEYRDVSINVPGRHNVLNALAAFSTGLELGIAPERLIVGLACYSGMRRRFQVKF 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            N +G  +  DYAH  + ++  +K  ++     R++ VF         +       AL  
Sbjct: 320 DNGKGLMVVDDYAHHPSEVKATVKAAKSGWVDSRVVAVFQPHLFSRTKEFADEYGWALSR 379

Query: 410 ADIAIVTDDNPRSEDPEKI---------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           ADI  + D  P  E               A    G         R        E      
Sbjct: 380 ADIVFIADVYPSREKAVDYPGVDGTLVSTAVRKAGGKHVEFIAERASLFAALKEYAVDGT 439

Query: 461 VLVVAGKGH 469
           +L+  G G 
Sbjct: 440 MLLFMGAGD 448


>gi|270295448|ref|ZP_06201649.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D20]
 gi|270274695|gb|EFA20556.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D20]
          Length = 461

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 128/382 (33%), Gaps = 42/382 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S      +G T+ +   +++              
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLLHQS-----HVGCTAFLGGISKNYGT----------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L S    +  +EA       H L          T    DH+D + T++AY  +  R 
Sbjct: 155 -NLLLSATSPYTVIEADEFDRSFHWLS---PWMSVITATDPDHLDIYGTKEAYLES-FRH 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +  L+      I++       +V       G    +        H + +   + +  +  
Sbjct: 210 YTTLIQPGGALILHKGLEMQADV-----QPGVTTYTYSRNEGDFHAENIRIGNGEIFIDF 264

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    +P    + N + A  L    G     + + +     V  RF+F   N
Sbjct: 265 VAPDTRINDIQLGVPVSINIENGVAAMALAHLSGATDEEIKQGMASFRGVDRRFDFKLKN 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLAD 411
            R      DYAH    +   +K++R +   + I V+F                 +L L+D
Sbjct: 325 DR-IVFLSDYAHHPAEIAQSVKSVRELYQDKKITVIFQPHLYTRTRDFYRDFADSLSLSD 383

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+T+  P  E P      + I   +  GI   I    R E + + +      +VLVV 
Sbjct: 384 EVILTEIYPAREQPIPGVTSQLIYDNLRPGIEKCIC---RKEDVLSLLAQ-KHTEVLVVL 439

Query: 466 GKGH-ETV--HIVTNGEKKMSV 484
           G G  +     I     +K   
Sbjct: 440 GAGDLDNYAPQITQLLSEKYHG 461


>gi|168486808|ref|ZP_02711316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570252|gb|EDT90780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
          Length = 450

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 149/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A           
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIATDKN 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH   + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGLFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKDLASKTEATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 317 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|167626976|ref|YP_001677476.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|189028990|sp|B0TW67|MURC_FRAP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167596977|gb|ABZ86975.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 452

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 145/408 (35%), Gaps = 39/408 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V SSA         + S   +L V   ++ + L       ++    +AVTGT GK++ +
Sbjct: 65  VVYSSAILDNH---PLLSKARVLGVQCLKRAMFLALLMKDFRYS---IAVTGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +  +   ++  +     +                +  A S +   G   + +EA 
Sbjct: 119 SILATLLCKLDTTNSFV-----VGGV-------------VKYADSNIQINGTDRLVIEAD 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--A 248
                      +       TN+  DH+  ++     ++  +  F   L KES   IY   
Sbjct: 161 ESDAS---FLYLNPNVAIVTNIDLDHMSTYKNS---YDNLLENFANFLMKESIENIYLCV 214

Query: 249 DDAYSKEVMKRAHNAGC-RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD    +++ +  +     ++S G+       +       N    T+  +   +DF   L
Sbjct: 215 DDHGCNDLLDKYRSRVVGNIVSYGFAINSDARIYNYRVSDNLTTFTVEYKSGKYDFELQL 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAH 364
           PG++ V NA      C+ +G     +   L  +  V  RF+      +S    +  DY H
Sbjct: 275 PGKYNVQNATACVVACLDLGFSYKDIYNALATVKGVARRFDVYDKQISSHKIPVIDDYGH 334

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +   L  +R    + +II VF            I    AL LAD  I+       E
Sbjct: 335 HPVEVTSSLGAVRDRYPNKKIIHVFQPHRYTRNRDLLIDWPKALSLADQLIILPTYSAGE 394

Query: 424 DP--EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                    ++I  IP  +   +    +    ++++   V+++ G G 
Sbjct: 395 QIIQGAESQDLIRNIPKVLLADSFDHVLYFLEKLVDDNTVVLIQGAGD 442


>gi|332881748|ref|ZP_08449396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332680387|gb|EGJ53336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 122/352 (34%), Gaps = 39/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I +++G   + +G    I                     
Sbjct: 103 AKMICITGSNGKTTTTSLIYHIFKKAG---YNVGLAGNIG----------------QSLA 143

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRL 233
             ++ +   +  +E SS  LD   +   +       N+  DH+D +    Q Y +AKMR+
Sbjct: 144 LQVAEKDYDYYVIELSSFQLDN--MYRFRANIAVLLNITPDHLDRYDHCMQNYVDAKMRI 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +     ++      D    KE+ K +     C    +  +G   +L     +     + 
Sbjct: 202 LQNQEETDAFVYWNDDPIIRKELEKYQIKAKKCPFSILKKEGMIGYLADGQYV-----IE 256

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        L G+  +YN+L A       G+ + ++ + L     V  R E V   
Sbjct: 257 YPTPFNMEQESLALTGKHNMYNSLAAGITADIAGVKNEVIRQSLGDFEGVEHRLEKV-VR 315

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            RG     D   T+  ++     + ++ +    V+   G D+      I   +      +
Sbjct: 316 VRGVDYINDSKATN--VDACWYALESMKTPT--VLILGGKDKGNDYEAIAELVRKKCVGL 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN +  D          GIP   +  +  + +     M    D +++
Sbjct: 372 VFLGADNRKLHDFFD-----SFGIP-IADTHSMKDCVEACYRMARPGDTVLL 417


>gi|51595039|ref|YP_069230.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           IP 32953]
 gi|150260409|ref|ZP_01917137.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125]
 gi|167469525|ref|ZP_02334229.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis FV-1]
 gi|218927752|ref|YP_002345627.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis CO92]
 gi|229837053|ref|ZP_04457218.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A]
 gi|229840444|ref|ZP_04460603.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843014|ref|ZP_04463164.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900779|ref|ZP_04515903.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516]
 gi|20532169|sp|Q8ZIE8|MURC_YERPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798206|sp|Q66EK4|MURC_YERPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082521|sp|A7FM65|MURC_YERP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082522|sp|Q1C215|MURC_YERPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082523|sp|Q1CMM6|MURC_YERPN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082895|sp|A4TQ82|MURC_YERPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51588321|emb|CAH19929.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|115346363|emb|CAL19235.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis CO92]
 gi|149289817|gb|EDM39894.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125]
 gi|229682118|gb|EEO78210.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516]
 gi|229689890|gb|EEO81949.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696810|gb|EEO86857.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705996|gb|EEO92005.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A]
 gi|320016922|gb|ADW00494.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 491

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 143/420 (34%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRYRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMLSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  + K   +    
Sbjct: 231 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G   
Sbjct: 288 APGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI+++F                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANVLSQVDVLLML 407

Query: 417 DDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D     E P        +   I + G    I   +   A     ++LN +D+++V G G+
Sbjct: 408 DVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQGAGN 467


>gi|71908878|ref|YP_286465.1| cyanophycin synthetase [Dechloromonas aromatica RCB]
 gi|71848499|gb|AAZ47995.1| Cyanophycin synthetase [Dechloromonas aromatica RCB]
          Length = 857

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 136/376 (36%), Gaps = 33/376 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+ GT+GK++ +  + +I + +GL    +G TST   + +  R+ T        A +
Sbjct: 471 PVVAIAGTNGKTTTSRLIGRIFESNGLR---VGMTSTDGIYIEGKRIDTGDCSGPRSARN 527

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID--YHQTQQAYFNAKMR 232
            L    V     E +  G+ +  L          TN+G  DH+   Y  T       K  
Sbjct: 528 VLMHPDVDAAVFETARGGVLREGLGFDLCDVAVVTNIGLGDHLGLNYVTTVDELAVVKRV 587

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-----IHN 287
           + E + P    A++ A D     V   A +    V+          L    A     ++ 
Sbjct: 588 IVENVSPH-GTAVLNATDP---IVASMAIHCPGDVIFFARDRNHHVLATHRAQGKRVVYV 643

Query: 288 KQQVTISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++   I  EG       PL            FQV NA+ AA    A+G D  ++   L  
Sbjct: 644 ERDAIIFGEGGRKKHRVPLANVPLTRNGSIGFQVENAMAAAATGWALGYDWPVIERALAN 703

Query: 339 L--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                      F   + +G  +  DY H  ++++ ++K +  + + R  VV    GDR  
Sbjct: 704 FVSDATTAPGRFNVFDFKGATLIADYGHNPDAIQALVKAVENMPAVRRSVVISGAGDRRD 763

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAI 449
                  +I  +  D  I+  D   R     ++   +  G+                 AI
Sbjct: 764 EDIRQQTEILGEAFDDVILYQDACQRGRADGEVIGLLRDGLANASRTKQIDAITGEFVAI 823

Query: 450 RTAIEMLNKQDVLVVA 465
            TA+  L   D+ ++ 
Sbjct: 824 DTALNRLQPGDLCLIL 839


>gi|307824832|ref|ZP_07655055.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
 gi|307734190|gb|EFO05044.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
          Length = 480

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 132/423 (31%), Gaps = 50/423 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            + +V SSA    +          I V+    + L+      +G      +AV GT GK+
Sbjct: 76  VDVVVASSAIDRSNEEIDEAYIQRIPVIPRA-EMLAELMRFRFG------IAVAGTHGKT 128

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    I    GL      PT  I                        +  G+ H  V
Sbjct: 129 TTTSLTASILAEGGLD-----PTFVIGGRLNSAGSN--------------AKLGLGHYLV 169

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +           ++ +    TN+ +DH+  ++          + F   LP    A++ 
Sbjct: 170 AEADESDASFL--YLQPMMAIVTNIDQDHMATYEGSYQRLKDTFKEFLHHLPFYGLAVMC 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLF 304
            DD   + V+         V + G ++   +    +          +   G         
Sbjct: 228 LDDEGVRAVLPEISKP---VTTYGVHEDADVRAVNIKQEGMHTSFDVIRRGDYPPLQVTL 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVD 361
            +PG   + NAL A  +   + +  A +++ L     +  RF+  G    G     +  D
Sbjct: 285 NMPGWHNMLNALAAISVATKLAVGDAAIIKSLGAFKGIGRRFQLNGDLPMGEGKLTLVDD 344

Query: 362 YAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    +   L+ +R      R ++VF                  L   D+ I+ D   
Sbjct: 345 YGHHPREIAATLEALRQAWPDRRSVIVFQPHRYTRTRDLFEDFVQVLSTVDVLILMDVYA 404

Query: 421 RSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
             E   P      +   I       P F+E    +  I   I +    DV++  G G+  
Sbjct: 405 AGETAIPGADGRALSRAIRVRGQVDPVFVENWEELPQILAGIVLA--DDVILTMGAGN-V 461

Query: 472 VHI 474
             I
Sbjct: 462 GQI 464


>gi|46446265|ref|YP_007630.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 841

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 139/441 (31%), Gaps = 23/441 (5%)

Query: 30  INEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           I+++  DSRH+  +  +FVA+ G K+DGH F+ QA   GA+  +VS  ++       I  
Sbjct: 25  IDQIIIDSRHVNSSNALFVALKGEKQDGHDFVQQAAELGAKYALVSEQWTPPFNLKPIF- 83

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +L V +    L   A     + P  I+ +TGT GK+ V   + Q+            
Sbjct: 84  ---LLKVKSPLSALQEVAKAYRLQLPTKIIGITGTYGKTMVKDLLFQLL----------- 129

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             ST  +                  L+    Q +  +    S         D I+     
Sbjct: 130 --STEKNVCASPGSFNSQIGVALSLLTIQKDQELAIIEAAISKKQEMDILADLIRPDYTI 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G+ H+             ++L      K    ++  D      +     ++     
Sbjct: 188 LTPIGKKHLATLNDIDTITYETLKLVWA-TSKTGWVLLPNDIYQQFHLKNNLFSSYIWDR 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                   I   K     +  Q+T   +   ++        + +    + +      GI 
Sbjct: 247 DSKCLPHAIPFSKNSPFASHYQLTF-PDSSRYEQQMTNGYSYFLNLINITSKAAWLSGIK 305

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  + +  E  +  P R E   +      I        +S++   K+       +  +  
Sbjct: 306 AENIKKIFEYYYPEPSRTEIWKSPIGATFINETSCSDPHSIDRAFKHFEHAAPSQRKIFI 365

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--R- 445
             G   +                 A +         P K   + +  I    E     R 
Sbjct: 366 FGGMKGNISFAQNYYTKIGKTISKAHLRHLLLFGHQPFKTLIDEVKKISPETEILCFKRC 425

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            EA+    + L  QD++++ G
Sbjct: 426 EEALNYLQKNLQSQDLILIKG 446


>gi|291544563|emb|CBL17672.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus sp.
           18P13]
          Length = 462

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 124/355 (34%), Gaps = 42/355 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I  VTG+ GK++  + + ++  ++G   ++ G                     L   
Sbjct: 115 PCRIYGVTGSDGKTTTTTLISEMLAKTGRRVYKGGNIG----------------KALLPL 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +  +      VE SS  L   R           TN+  +H+D H T + Y   K+ L
Sbjct: 159 IETIREEDAAV--VELSSFQLISMRRS---PDVAVITNISPNHLDVHGTMEEYIGCKVNL 213

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +  D+A +  + ++      R+L    Q K      + A         
Sbjct: 214 IAHQNAYSKTV-LNLDNAQTAALAEQVRG---RLLWFTRQQKPERGTFLDAEGWLCYAEA 269

Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               +        +PG   V N L A        + +  ++E  +    V  R EFV   
Sbjct: 270 GKTQRIVRAEDIRIPGLHNVENYLAAIAAVWGE-VPAETIVEVAKTFGGVEHRIEFV-RE 327

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G + Y D   T  S   +L  +R+    + ++V   G D+     P+   +   +  +
Sbjct: 328 LDGVKWYNDSIAT--SPTRVLAGLRSF--NQRLIVIAGGYDKKIPFEPMAETVNQRVKIL 383

Query: 413 AIVTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            ++    P+     +EDP    A++       +   +  EA++ A E+    D++
Sbjct: 384 ILMGVTAPKIEKAVTEDPSYDPAKL-----QIVHAASMEEAVQKAKELAQPGDIV 433


>gi|229134722|ref|ZP_04263531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
 gi|228648768|gb|EEL04794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
          Length = 450

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 141/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A  +        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYSISA---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQLAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   +II 
Sbjct: 176 -----------VESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-EADYSIIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKV-LFSTTKEIEDGAYIKDNALYFKGEKVVKVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  ++  L+    V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLLGVSNEAIIAVLKSFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++          AIVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYF---KHVKAIVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          +A+  A       DV+++
Sbjct: 386 VRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 422


>gi|270340242|ref|ZP_06007559.2| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
 gi|270332137|gb|EFA42923.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
          Length = 497

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 134/353 (37%), Gaps = 41/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ VTG++GK++  S +  I + +G   + +G    I                  ++L
Sbjct: 156 SKMICVTGSNGKTTTTSLIYHIFKNAG---YDVGLAGNIG-----------------RSL 195

Query: 175 S-YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMR 232
           +  ++     +  +E SS  LD   +   +       N+  DH+D +    Q Y +AKMR
Sbjct: 196 ALQVAEDPHAYYIIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDYKFQNYVDAKMR 253

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +      ++S      D    KE+ K   H   C    +  +G   ++++        ++
Sbjct: 254 IIRNQTEEDSFIYWNDDPVVKKELEKYDIHAVQCPFSELKEKGSIGYIEEGQY-----KL 308

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              V          L G+  +YN+L A       GI    + + L     V  R E V  
Sbjct: 309 EYPVPFNMEQERLSLTGKHNIYNSLAAGLASNISGIRKEQIRKSLSDFPGVEHRLEKVCD 368

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +  G  Y++ +  +N ++     + ++T+  I+++   G D+      I   +      
Sbjct: 369 VA--GVHYINDSKATN-VDACWYALESMTTPTILII--GGRDKGNNYDAIKELVKQKCVG 423

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +  DN +  D      ++  GIP   +  +  + +    +M    D +++
Sbjct: 424 LVYLGADNKKLHDN---FDDL--GIP-VADTHSMKDCVEACYKMAKTGDTVLL 470


>gi|56459545|ref|YP_154826.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
 gi|62900480|sp|Q5R0M3|MURD_IDILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56178555|gb|AAV81277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
          Length = 463

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 141/399 (35%), Gaps = 49/399 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S    L++    +  +  I +V +   F               I+AVTG++GKS
Sbjct: 80  ADLIIASPGIDLREDPVVLARDADIPIVGDVELFAQE--------SKLPIVAVTGSNGKS 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V+ + ++ G +    G                     +      L  Q    V +
Sbjct: 132 TVTRMVEFVAKQCGKNVAAAGNIG------------------VPVLDLLLQEQHPDAVIL 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +  +KL A +  N+  DH+D + T   Y  AK R+F         A  +
Sbjct: 174 ELSSFQLES--VSSLKLKAAALMNISADHMDRYCTLDEYVKAKQRIFTH-------AKTW 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFP 305
             +   ++                   K   L           V ++ +G          
Sbjct: 225 ILNRQQQDTWPHPVTGKLMTFGNDSHPKHFGLLSGNIDRVSGPVAVTFDGSVVLRADQLQ 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   + N   A  LC AI ID    +  +++   +P R E V  N     +    A  
Sbjct: 285 LQGIHNLVNVQAALALCQAIDIDIEAAVRAVKEFKGLPHRCELVSDNEGVLWVNDSKATN 344

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +    ++ +R + +GR++++   G  +    R +   +   +  +  + +D PR    
Sbjct: 345 IGATAAAVEGLRPMINGRLLLI-AGGVGKGADFRELQSTL-ERVDILLTIGEDGPR---- 398

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I     G  +  +  +A+  A  ++   D++++
Sbjct: 399 ------IGQLFNGSRQVKSLQQAVELAASLVQTGDMVLL 431


>gi|91762846|ref|ZP_01264811.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718648|gb|EAS85298.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 464

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 135/371 (36%), Gaps = 47/371 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENIL 118
           IA+ A  +V+SSA         I++N P L+    ++        + A+ +        +
Sbjct: 65  IAK-ATIVVISSA---------IKNNNPELIEAKLKQLPIYKRGEMLANIVSL---TKNI 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK++  S +  I  ++ L    I     + +  +++     S   + +A     
Sbjct: 112 VVTGSHGKTTTTSLLASIFSKTKLDPTII--NGGVLNAIKNSAKLGKSDWCILEADE--- 166

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                       S G   H    +       TN+ R+H+D++ + +         F   +
Sbjct: 167 ------------SDGSFIH----VPPTYSIVTNIDREHMDFYNSMKD-LKELFIKFINKV 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEG 297
           P    + I  DD  +K+++ +             +  F     K    +++  + I++ G
Sbjct: 210 PSFGKSFICIDDKNNKDLLSKLKMKNYYTYGTDNKSNFYIKNIKQEKEYSQYDLAINLPG 269

Query: 298 KD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           K          PL G   + N+  A  + + IGI   ++ + L++   V  RF  + T  
Sbjct: 270 KKNLTIRKIKLPLLGIHNIRNSTAAIAVAVTIGISQNIIKKGLKEFKGVQRRFNKIFT-H 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           R    Y DYAH    +  +L  +R       +I +F                ++   AD+
Sbjct: 329 RETNFYDDYAHHPTEIREVLNGVRAAYKKEEVICIFQPHRISRLKDLKKEFSLSFKKADV 388

Query: 413 AIVTDDNPRSE 423
            I+       E
Sbjct: 389 VILCPIYTAGE 399


>gi|170748773|ref|YP_001755033.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           radiotolerans JCM 2831]
 gi|229620046|sp|B1LXZ3|MURC_METRJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170655295|gb|ACB24350.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 468

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 133/436 (30%), Gaps = 87/436 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A    +          + VV        L   +         +A+ GT GK+
Sbjct: 67  AALVVVSTAIRRDNPELQAARERRLPVVRRAEMLAELMRFKSC-------VAIAGTHGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +G     +     I+++  + R+     + +    S            
Sbjct: 120 TTTSLVATLLD-AGNLDPTVINGGIINAYGTNARMGAGEWMVVEADESD----------- 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D+  +  A  +A  R F + +P    A++ 
Sbjct: 168 ---------GTFLKLPADVAIVTNIDPEHLDHFGSFDAIKDA-FRRFIDNIPFYGFAVMC 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD------- 299
            D    ++++    +   R+++ G      + L  V     + +  + +  +        
Sbjct: 218 IDHPVVQDLVGHIEDR--RIITYGENPQADVRLIDVDLRGGQSRFRVMIRDRRPGYRMEM 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + P+PG+    NA  A  +   +G+    + + L     V  RF   G    G  I+
Sbjct: 276 EDLVLPMPGKHNALNATAALAVAHELGVKPDAIRQALAGFGGVKRRFTRTGEW-NGATIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DY H    ++ +LK  R  T   +I V                    + AD  IV    
Sbjct: 335 DDYGHHPVEIKAVLKAARASTEHGVIAVVQPHRYTRLQSLFDDFCTCFNDADTVIVAPVY 394

Query: 420 PRSE---------------------------DPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
              E                            PE++   I                    
Sbjct: 395 AAGEQPIEGFDRDSLVAGLRSRGHRDARALERPEELAGIIA------------------- 435

Query: 453 IEMLNKQDVLVVAGKG 468
            ++    D +V  G G
Sbjct: 436 -DLAKPGDYVVCLGAG 450


>gi|148997231|ref|ZP_01824885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168575358|ref|ZP_02721294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|307067304|ref|YP_003876270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
 gi|147756931|gb|EDK63971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578542|gb|EDT99070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|306408841|gb|ADM84268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
          Length = 450

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 149/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A           
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGEHGLLSG---NIGYPASQVAQIASDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH +   Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKDLASKTEATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 317 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|59710872|ref|YP_203648.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59478973|gb|AAW84760.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 459

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AV GT GK++ +S +  + +  G     +     + +F             L +
Sbjct: 101 QDRWVMAVAGTHGKTTTSSMLAWVLEECGYKPGFL-VGGVLGNF--------GESARLGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +R            NL  DH D      A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHYR-----PRTLVLNNLEFDHADIFDDLAAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P          D   ++V+++          + + G+    K +    +  Q  
Sbjct: 207 LI-RTVPSTGRIFAPKQDKPLEQVLEQG-----CWSELEFTGEDGQWKAIKLQKDGSQFD 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  EG++     + L G+  V NAL+       +G+   L  E L K      R E  G 
Sbjct: 261 VYFEGENVGQVNWDLVGDHNVSNALMVVASARHVGVTPDLACEALGKFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++++ L  +R     + I+            G        +L  
Sbjct: 320 EVNGVTVYDDFAHHPTAIDLTLNGLRNKVGDKKIIAVLEPRSSTMKLGVHKDTLAASLHA 379

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     ++           N I+A +   +      D ++V 
Sbjct: 380 ADSVYLYQ-------PDNIAWSVDDVAQQCTQPAHTHNNIDAFVDMIVNEAQPGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|313899199|ref|ZP_07832719.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
 gi|312956022|gb|EFR37670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
          Length = 437

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 147/378 (38%), Gaps = 46/378 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
              AVTGT+GK+++ + + ++ +                       +   +  +    L+
Sbjct: 104 KYGAVTGTNGKTTITTMLYEMLK------------------YNHKAIVAGNIGWPLSELA 145

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    V++E S+  L    ++          NL  DH+DY  + ++Y+ +KMR++E
Sbjct: 146 LAYEDEEKDVALELSNFQLL--GIEHFAPHVSVVCNLAPDHLDYMPSVESYYESKMRIYE 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++   +   DDA    VM+ A +  C+V+      + + L +        ++ +  
Sbjct: 204 NCT-EDDWFLRNVDDAT---VMQYAQHIPCKVIDFSLTRQDVDLYRKDGTVYLHELAL-F 258

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E K+F  +    G++ + NA++A+ +   +G+  + + + +     V  R E++G    G
Sbjct: 259 EEKNFHVV----GDYNLSNAMIASCMAYKLGVSVSDIQKAIAAFSPVEHRLEYIGEK-NG 313

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            + Y D   T+     +   + +      I++   G D+      +       +      
Sbjct: 314 VKFYNDSKATNT--HAVAAALNSFDKN--IILLAGGHDKGISFEDLKQYD-ERVKLCVAF 368

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +  P+ +D                      EA+  A+    +QD+++++     +    
Sbjct: 369 GETGPQFQDI----------FSCVQVVETMQEALDAAVANSKEQDIVLLSPACS-SYDQF 417

Query: 476 TNGEKKMSVDCDIIREIL 493
            N E + ++  +++R+ L
Sbjct: 418 PNYEVRGALFKEMVRKWL 435


>gi|255536320|ref|YP_003096691.1| Cyanophycin synthase [Flavobacteriaceae bacterium 3519-10]
 gi|255342516|gb|ACU08629.1| Cyanophycin synthase [Flavobacteriaceae bacterium 3519-10]
          Length = 773

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 127/371 (34%), Gaps = 39/371 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  + Q  G   +  G T+T   +   +++ +      + A + L+   V    +E + 
Sbjct: 396 ILAHLVQSCG---YFPGYTTTDGIYIGGHQIASGDCSGPSSASTVLADPMVDFAVLETAR 452

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L          TN+  DH+      T +     K  +    +     AI+ A+
Sbjct: 453 GGLLRAGLAFDYCDVAVLTNIAADHLGLKNINTLEELAEVKAAVVRS-VKNTGWAILNAE 511

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--------------IHNKQQVTISV 295
           D +  ++ ++     C +           +KK  A              IH  +  T   
Sbjct: 512 DFHCNKIAEKL---DCNIGFFSLDNSNAVIKKHIANGGLATTVEDGNLVIHQGKNRTFIA 568

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             KD         +    N L A     + G     + + L          PGR  +   
Sbjct: 569 GIKDIPLTINGTSKCMTANILAATAAAFSYGFTPVQIHDALMSFVPGPELTPGRMNYFKV 628

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             R   + VDYAH  + L  +   +  I + R + +    GDR       + +IA ++ D
Sbjct: 629 --RDFSVLVDYAHNPHGLRAMQDYLTHIKAPRKVGIIAAVGDRRDSDIVELAEIAGNMFD 686

Query: 412 IAIVTDDNP-RSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV  ++  R  +  ++   ++ GI        +    +  EAIR A++   K D +V 
Sbjct: 687 HIIVRQEHSLRGRELSEMNKLMVQGIEKAGRAVKYDLIPDEKEAIRHALDTAQKDDYIVA 746

Query: 465 AGKGHETVHIV 475
                +    V
Sbjct: 747 LS---DNYQEV 754


>gi|166365245|ref|YP_001657518.1| UDP-N-acetylmuramate--L-alanine ligase [Microcystis aeruginosa
           NIES-843]
 gi|189029000|sp|B0JHH4|MURC_MICAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166087618|dbj|BAG02326.1| UDP-N-acetylmuramate-alanine ligase [Microcystis aeruginosa
           NIES-843]
          Length = 478

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 130/413 (31%), Gaps = 54/413 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S+A +  +       +    +   +    +L A         + +AV GT GK++ +
Sbjct: 86  VICSTAINDHNKEYQAARDLGYPIFHRSDVLAALIADY-------DSIAVAGTHGKTTTS 138

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +   +GL    I                    +   +  + L          + S
Sbjct: 139 SLIGYVLLEAGLDPTII----------------VGGEVDAWEGNARLGQGRFLVAEADES 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              L +H         G  TN+  DH D++Q      +     F E   +    +   D 
Sbjct: 183 DGSLTKH-----APKIGVITNIELDHPDHYQNLSEVIDT----FHEFAHQCQILVACLDC 233

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
               E            +S       G    + ++       + ++  +G         +
Sbjct: 234 DTIAE-------HFRPTISYSLDPEKGADYTVSEIIYEQGMMKASVWEKGSYLGQMEVKI 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + NAL    +   +G++ A++ + +        RFE  G  + G     DYAH  
Sbjct: 287 PGQHNISNALAVVAIGRYLGLEFAVIADAIATFAGAKRRFEHKG-EANGITFIDDYAHHP 345

Query: 367 NSLEMILKNIRTITSGRI----IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           + L   L   +    G+     I +F                 A   AD+ ++TD     
Sbjct: 346 SELLATLAAAKLKVEGKQYQRSIAIFQPHRYSRTTAFLEEFGSAFSSADVVVLTDIYSAG 405

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E        +++  ++                 +  +E+L   D+ +  G G+
Sbjct: 406 EVNINHVTGQQVAEQVRKHHKNAYYHPELSSLGQFLLEILQPGDLALFLGAGN 458


>gi|71082732|ref|YP_265451.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|109892719|sp|Q4FPK6|MURC_PELUB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71061845|gb|AAZ20848.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 464

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 136/371 (36%), Gaps = 47/371 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENIL 118
           IA+ A  +V+SSA         I++N P L+    ++        + A+ +        +
Sbjct: 65  IAK-ATIVVISSA---------IKNNNPELIEAKLKQLPIYKRGEMLANIVSL---TKNI 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK++  S +  I  ++ L    I     + +  +++     S   + +A     
Sbjct: 112 VVTGSHGKTTTTSLLASIFSKTKLDPTII--NGGVLNAIKNSAKLGKSDWCILEADE--- 166

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                       S G   H    +       TN+ R+H+D++ + +         F   +
Sbjct: 167 ------------SDGSFIH----VPPTYSIVTNIDREHMDFYNSMKD-LKELFIKFINKV 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEG 297
           P    + I  DD  +K+++ +             +  F     K    +++  + I++ G
Sbjct: 210 PSFGKSFICIDDKNNKDLLSKLKMKNYYTYGTDNKSNFYIKNIKQEKEYSQYDLAINLPG 269

Query: 298 KD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           K          PL G   + N+  A  + + IGI   ++ + L++   V  RF  + T  
Sbjct: 270 KKNLTIRKIKLPLLGIHNIRNSTAAIAVAVTIGISQNIIKKGLKEFKGVQRRFNKIFT-H 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           R    Y DYAH    +  +L  +R    +  +I +F                ++   AD+
Sbjct: 329 RETNFYDDYAHHPTEIREVLNGVRAAYKNEEVICIFQPHRISRLKDLKKEFSLSFKKADV 388

Query: 413 AIVTDDNPRSE 423
            I+       E
Sbjct: 389 VILCPIYTAGE 399


>gi|189464540|ref|ZP_03013325.1| hypothetical protein BACINT_00882 [Bacteroides intestinalis DSM
           17393]
 gi|189438330|gb|EDV07315.1| hypothetical protein BACINT_00882 [Bacteroides intestinalis DSM
           17393]
          Length = 459

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 129/365 (35%), Gaps = 39/365 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +G T+ +   +++             
Sbjct: 110 HNSKGLCVAGTHGKTTTSTMTAHLLYQS-----HVGCTAFLGGISKNYDT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T    DH+D + T++AY  +  R
Sbjct: 155 --NLLLSQSSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTEEAYLES-FR 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II+ D A   +V      AG +V S        H + +   + +  + 
Sbjct: 209 HYTTLIQSGGALIIHKDIALKPDV-----QAGVKVYSYARTEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G+    + + +     V  RF+F   
Sbjct: 264 FIAPDTRINDIQLGVPVSINIENGVAAMALAHLNGVTDEEIKQGMASFRGVDRRFDFKVK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N +      DYAH    +   +K+IR +   + I  +F                 +L L 
Sbjct: 324 NDK-VVFLSDYAHHPAEIAQSVKSIRDLYQDKKITAIFQPHLYTRTRDFYKEFANSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+ D  P  E P      + I   +  GI   + K    E I   +    + +VL+ 
Sbjct: 383 DEVILVDIYPAREQPIPGVTSQLIYDNLRPGIEKCMCK---KEDILELLSQ-KQIEVLIT 438

Query: 465 AGKGH 469
            G G+
Sbjct: 439 LGAGN 443


>gi|2780743|dbj|BAA24358.1| MurC [Porphyromonas gingivalis]
          Length = 433

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 122/382 (31%), Gaps = 40/382 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV + A        T   +    VV    + L            E  L V GT GK++ +
Sbjct: 70  IVYTPAVPADHSELTYFRSNGYRVVKRA-EVLGEI------TLMERALCVAGTHGKTTTS 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  + ++S      +   + +   + + +             + L S     V VEA 
Sbjct: 123 TLLAHLLKQS-----HVDCNAFLGGISNNYQS------------NLLLSDKSDLVVVEAD 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H    +K      T+   DH+D + T + Y ++    F  L+      ++    
Sbjct: 166 EFDRSFH---HLKPFMAIITSADPDHMDIYGTAENYRDS-FEHFTSLIQSGGALVLKYGA 221

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
             +  +     +      S   +        +     +   T    G   +     +P  
Sbjct: 222 PVNPRL---GSDVSLFTYSSDDRQADYFASDIMIRDGRLFFTWHYPGGQLEEVELGVPVR 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NA+ A  +    G+    +   +        RFE V    R   +  DYAH    L
Sbjct: 279 INVENAVAAMAIAHLNGVTVEELRSGIASFKGSHRRFEKVLDTER-VVLIDDYAHHPVEL 337

Query: 370 EMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           +  ++++R I SG+ I+ +F                 +L + D  ++ D  P  E P   
Sbjct: 338 DAAIRSVREIYSGKHIMGIFQPHLYSRTADFYQDFAKSLSMLDQVVLLDIYPARELPLPG 397

Query: 426 ---EKIRAEIIHGIPGFIEKGN 444
                I   I +     + K +
Sbjct: 398 VTSRLILDLIENPNKTLVSKND 419


>gi|331701578|ref|YP_004398537.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128921|gb|AEB73474.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 443

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 125/377 (33%), Gaps = 60/377 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+G  GK+S    +  +      + + IG  S       + R          +     
Sbjct: 107 IGVSGAHGKTSTTGLLAHVLSGIAPTDYLIGDGS--GKGVPNARFFVYEADEYRRHFL-- 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    +      TN+  DH DY+++     +A  + F   
Sbjct: 163 -----------------------ATEPDYAIMTNIDFDHPDYYKSIDDVADA-FQTFANQ 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
             K   A  + DD   +++      A   +   G +         V    +     ++ +
Sbjct: 199 TKKGIFA--WGDDKRLRQL-----KAKVPIYYYGLKDTDDFQAVDVKRTTSGSSFDVTYK 251

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK+  +F  PL GE  ++N+L    +     +D   + + L+    V  RF        G
Sbjct: 252 GKNLGNFSVPLFGEHNIFNSLAVIAVAYFEDVDLDEIRKELKTFQGVKRRFAERKIA--G 309

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  +   R    S +I VVF                 +L+LAD   
Sbjct: 310 MTIIDDYAHHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAKSLNLADEVF 369

Query: 415 VTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGK 467
           +T     PR E   K+ +E    +   I KG RI     +++ ++       DV++  G 
Sbjct: 370 LTSIYSSPR-ESHGKVSSE---DLSKKITKGGRI----LSVDNMSPLLDYDNDVVIFMGA 421

Query: 468 GHETVHIVTNGEKKMSV 484
           G      +   EK    
Sbjct: 422 GD-----IQKYEKSYED 433


>gi|126650751|ref|ZP_01722967.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126592416|gb|EAZ86434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 462

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 146/411 (35%), Gaps = 36/411 (8%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G   ++     +          NT +L V +  +    F     G     ++A+TGT G
Sbjct: 60  KGPSLVISDKPATELK---NALDNTTVLHVKSVAQAYWTFIEYYRGLFQIPVVALTGTCG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    ++ I  +           +++SS  +  +          K  + +   G+   
Sbjct: 117 KTTTKEMLKHIASK------HWQVQASVSSKNEPRQSLPYLTGVDDKTQAAIFELGL--- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                + G  +H+    +   G  TN+G  H+D     + Y  AK  + E  +  +   +
Sbjct: 168 ----GNTGNIKHQCMIYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEG-IRADGTLL 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I ADDA  +++         +++  G Q         +   H   +  + V    ++   
Sbjct: 223 INADDANIEKI--SLQKFKGKIIRFGLQDSADYKASAIEFAHTGMKFVLEVADTKYNVFV 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  GE QVYNAL A   C  +G+     +  L     +    EF         I   + +
Sbjct: 281 PGYGEHQVYNALAAIAACSEMGLSIRQAIAGLRTFKQMARHLEFTKGIGDSTIIDDTWTN 340

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              S+E  LK + T+   + +++        G   ++  R I  K+A    D  I     
Sbjct: 341 NPTSVEAALKVLDTVGKEKKVILVLGDIKRLGNFEEKYHREIGSKVAERQIDTLITI--- 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK----QDVLVVAG 466
              +  E I  +      G   + +  + +   +E+L        ++++ G
Sbjct: 398 --GKRAEAIADQAKK--DGTKAEVHTFKDVTGVLEILKPKLDADTIVLIKG 444


>gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
 gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
          Length = 821

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 119/349 (34%), Gaps = 36/349 (10%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN---------------- 89
           F A+   +  G  +IP    +G    V++     +  +  +R                  
Sbjct: 17  FFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQL 76

Query: 90  --TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                L+V N  K L   A     K    ++ +TG++GK+ V  ++ Q+           
Sbjct: 77  STLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQLLS--------P 128

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 S  + ++++  P  ++    LS  +  G+    +          R+  IK   G
Sbjct: 129 DRCIVRSPRSYNSQIGVPLSVW---QLSEEAELGIFEAGISEMGEMGALKRM--IKPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCR 266
             TN+G  H +   + Q     K+ LF++        I   D+   S  V K    A   
Sbjct: 184 ILTNIGGAHQENFFSLQEKCMEKLTLFKDC----DVVIYNGDNELISNCVAKSMLTAREI 239

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S     + +++ +V    +   ++      D  F  P   +  + NAL     C+ + 
Sbjct: 240 AWSRTDIERPLYISRVTKKEDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLM 299

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             +  + E + +L  +  R E     +    I   Y     SL++ L  
Sbjct: 300 TPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSDLASLDIALDF 348


>gi|303254732|ref|ZP_07340833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|303259957|ref|ZP_07345931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261363|ref|ZP_07347311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264029|ref|ZP_07349950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
 gi|303266343|ref|ZP_07352233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|303268810|ref|ZP_07354598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|301801549|emb|CBW34241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV200]
 gi|302598272|gb|EFL65317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|302637497|gb|EFL67984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638876|gb|EFL69337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|302641675|gb|EFL72034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|302644154|gb|EFL74411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|302646434|gb|EFL76660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
          Length = 450

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 148/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A           
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH   + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGLFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +    K++  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLVKDLASKTEATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 317 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|218289897|ref|ZP_03494087.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240037|gb|EED07223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 458

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 140/379 (36%), Gaps = 57/379 (15%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +        A  L  +    I A+TG++GK++  + V ++ + SG      G   T
Sbjct: 103 VIVTDV-----EIAYWLEERP---IYAITGSNGKTTTTTLVGEMLKASGYHPIVAGNIGT 154

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                                +  +  Q    + +E SS  L+            +  N 
Sbjct: 155 --------------------PVCDVVDQPGDLLVLEVSSFQLE--GTHTFHPRGAALLNF 192

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H+DYH T +AY  AK +LF    P +  AI+  D A  ++   RA     RV     
Sbjct: 193 YPAHLDYHGTYEAYQQAKWKLFANQTPDD-VAILNWDQALVRD---RAGELAARVRGFSL 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGI 327
           +G          +       ++V G +   + P     LPG   + NA  AA L +A G 
Sbjct: 249 EGAPFD----EGVGVIDGALVAVRGGERTPILPVDQVALPGRHNLQNAAAAAALALAAGA 304

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIV 386
               V   L     V  R EFV   + G R Y D  A   ++    LK+       R +V
Sbjct: 305 HVEAVARVLATFQGVEHRLEFVREVA-GVRYYNDSKATNPDAARQALKSFE-----RDVV 358

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNR 445
               G DR     P++  I+  +    ++       E  EK+R  +   G+   +     
Sbjct: 359 WIAGGLDRGISFDPLLPDISGRVRAAVLL------GETKEKLREVLARAGVSTCVFASTM 412

Query: 446 IEAIRTAIEMLNKQDVLVV 464
            EA+R A  +    DV+++
Sbjct: 413 EEAVREASRIAEPGDVVLL 431


>gi|218439183|ref|YP_002377512.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 7424]
 gi|254765996|sp|B7KHE9|MURC_CYAP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218171911|gb|ACK70644.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7424]
          Length = 495

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 130/421 (30%), Gaps = 59/421 (14%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+ S+A +    ++ A      PI    +    L               + V GT GK++
Sbjct: 109 IICSTAIADNNSEYQAAKELGYPIFHRSDVLAALIK---------DYYSIGVAGTHGKTT 159

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +    GL    I                    +      + L         V+
Sbjct: 160 TSSLIGYMLLGGGLDPTII----------------VGGEVDAWDGNARLGQGQFLVAEVD 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++QT         ++FE+   +    I   
Sbjct: 204 ESDGSLTKH-----SPRIGIITNIELDHPDHYQTLDEVVKT-FQIFEQ---QCETLIACI 254

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           D        K         ++            +K V    +     +  +G+       
Sbjct: 255 DC-------KTVRTHFKPQITYSLDPDREADYTVKNVTYKTDGSMAEVWEKGQYLGQMHI 307

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  + NAL A  +   +G+D  ++   +        RFE  G  S+G     DYAH
Sbjct: 308 SLLGQHNISNALAAVAVGRTLGLDFEVIASGIATFIGAKRRFEHKG-YSQGITFIDDYAH 366

Query: 365 TSNSLEMILKNIR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             + +   L+  R         R++ +F                 + D AD+ IVTD   
Sbjct: 367 HPSEVRCTLEAARLRLDQDRYRRVVAIFQPHRYSRTATFMDEFATSFDDADVVIVTDIYS 426

Query: 421 RSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
             E        +++   I           +         ++L   D+ +  G G+    I
Sbjct: 427 AGEVNIGQISGQQVADAISRHHQQVFYHPSLKSLGSFLSQILEPGDLALFLGAGN-LNQI 485

Query: 475 V 475
           +
Sbjct: 486 I 486


>gi|332881752|ref|ZP_08449400.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680391|gb|EGJ53340.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 458

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 129/417 (30%), Gaps = 53/417 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V + A   +             +     + L        G      L V GT GK++ +
Sbjct: 75  VVYTPAIPGEHAELAYFKANGFEIEKRA-QVLGTLTRAHKG------LCVAGTHGKTTTS 127

Query: 131 SFVQQICQRSGLSS--FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           S    I  +S +    F  G T    +                   +Y+ S    +V +E
Sbjct: 128 SMAAHILHQSHVDCNAFLGGITKNYGT-------------------NYILSPKSDYVVIE 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A       H L      A   T    DH+D + T++AY  +  R +  L+      +++ 
Sbjct: 169 ADEFDRSFHWL---TPYASVITATDPDHLDIYGTKEAYLES-FRKYTSLIRPGGFLVLHE 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLP 307
                 +V +     G    S        H + +     +         G   D    +P
Sbjct: 225 GLEMQPDVQE-----GVTTYSYSRGHGDFHAENIRIGDGEIYFDFISPLGHIKDVQLGVP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               + N + A  L    G+    +   +     V  RF+F            DYAH   
Sbjct: 280 VSINIENGIAAMALAQISGVTPEEIKRGMASFRGVDRRFDFR-LKDDKAVFLTDYAHHPA 338

Query: 368 SLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
            +   + +IR +  G+ I  +F                 +L L D  I+TD  P  E P 
Sbjct: 339 EIRQSVISIRELYRGKKIAAIFQPHLYTRTRDFYKEFAESLSLLDEVILTDIYPARETPI 398

Query: 426 -----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ETV--HI 474
                  I   +   +   +    R E +   +   +  DV ++ G G  E+    I
Sbjct: 399 PGVTSRLIYDRLAPTVKKCLC---RKEDVPEIVRQSDA-DVFILLGAGDLESYAPQI 451


>gi|317122782|ref|YP_004102785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592762|gb|ADU52058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
           marianensis DSM 12885]
          Length = 592

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 115/267 (43%), Gaps = 15/267 (5%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           D P L+  L+          ++ E+ + S  +Q G +FVAI G + +G  F  +A+ +GA
Sbjct: 4   DLPVLLQGLTFRVAGAPAPPQVAEIRTHSSRVQRGDLFVAIPGRRHNGVAFAGEAVRRGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGK 126
             IV       Q     +      + V + R  LS  A+  YG     +L V  TGT+GK
Sbjct: 64  RVIVAE-----QPPPGPLPPGVTWIQVPDARAALSRLAANRYGHPAGRLLVVGITGTTGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A  +  + + +G  +  +G             RLTTP P+ L   L  + + G T V
Sbjct: 119 TTTALLLHHLLKAAGWRAGLVGSLEVDTGRRRFTGRLTTPDPLELHGYLREMVTAGCTAV 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +E SS G+DQ R+D +    G  TNL   +H++YH T   Y  AK R    + P     
Sbjct: 179 VMEVSSQGVDQRRVDDVPFALGVVTNLAPLEHMEYHPTYDHYAAAKARFVAMIPPHGGVL 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +        +   +    A   V+  G
Sbjct: 239 MH-----EGEAAARLGPAARAPVVHFG 260



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 59/172 (34%), Gaps = 17/172 (9%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     N + A G  + +GI   LV   +      P R E +        +  D A
Sbjct: 373 TRLLGSHHALNVVAAVGAALWLGIHPDLVARAVPAFPAPPRRTEVLMQY--PFTVIDDTA 430

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVT--- 416
              +SL    K    I   R++ VF   G R +      G      A  L    I+T   
Sbjct: 431 GRPDSLAACFKVASRIPHRRLVAVFAVRGRRGEALNYANGLQLACEARRLRAQLIITASL 490

Query: 417 -----DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRI-EAIRTAIEMLNKQD 460
                DD  +  + E   A +  G      +E   R+ +AI  A+  L + D
Sbjct: 491 EVTGPDDAVQPAEWEACLAGLEAGGLRSSDVETHARLDDAIAAAVARLREGD 542


>gi|305664536|ref|YP_003860823.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
 gi|88708553|gb|EAR00789.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
          Length = 444

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 136/393 (34%), Gaps = 46/393 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        I+ +TG++GK++       I +  GL     G               
Sbjct: 94  EFAARYID---ATIIGITGSNGKTTTTMLTNHIFKEEGLDVGMAGNIG------------ 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   ++  +      TN+  DH+D ++  
Sbjct: 139 -------DSFAKMVAENDHDNYVLEISSFQLD--GINDFRPHIAIITNITPDHLDRYEYK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  +K R+  E   KE   I  ADD    E + + H     ++    + +       
Sbjct: 190 FENYVASKFRI-AENQSKEDYLIYDADDEVIVEWLNK-HPVKSILMPFSIKNELTQ---- 243

Query: 283 CAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A     ++ I    +  +       L G+  + N + AA     IGI    +   +   
Sbjct: 244 GAYLKNDRIIIKTNNETLEMMTSTLALEGKHNLKNTMAAATAAKLIGIRKETIRASIANF 303

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
                R E V        I    A   N        + ++++  + +V   G D+    +
Sbjct: 304 QGAEHRLEKVLKIQHVQYINDSKATNVN---ATYYALDSMSAPTVWIV--GGVDKGNDYK 358

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +M  +   +  I  + +DN       KI     + +   +E     EA++ A ++  + 
Sbjct: 359 ELMPLVREKVKAIICLGNDN------SKIVDAFGNVVDLMVETYAMEEAVKVAYKIAERG 412

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D ++++     +  +  N E +     + I+ +
Sbjct: 413 DTVLLS-PACASFDLFENYEDRGHQFKEAIKNL 444


>gi|219849719|ref|YP_002464152.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus aggregans DSM
           9485]
 gi|254765990|sp|B8G5Y3|MURC_CHLAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219543978|gb|ACL25716.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus aggregans DSM
           9485]
          Length = 474

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 135/436 (30%), Gaps = 54/436 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA+A++ ++A   +    T  +   I      R   +        + P 
Sbjct: 52  GHD---PAYVRGADAVLATAAIRGEHPELTAAAALGI-----PRLSRADLWREWSAQRP- 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AV GT GK++ ++      +  G++   +   + + +     +   P+   + +A  
Sbjct: 103 -VIAVAGTHGKTTTSAMTALALRGGGVACGFL-IGADVPALGGSAQWGDPTAPLVIEADE 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y                         +       TN+  DH D + T   Y  A      
Sbjct: 161 YDRVFLA-------------------LTPAMAIVTNVEWDHPDIYPTATDYAAAFAEFAA 201

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAG--------CRVLSVGYQGKFIHLKKVCAIHN 287
           + +      ++ ADD  +  +                C  +S           +V     
Sbjct: 202 Q-VRDRRRLLLCADDPGTAALDVDGQARWYGIDEQIACDPVSCRLAPLDWTASRVTVTAE 260

Query: 288 KQQVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            QQ  +    +              +PG   V NA  A       G D       L    
Sbjct: 261 GQQFDLWYYDRRTFARRFALMVTLAVPGIHNVRNATAALAAAALWGADLQAAGAALATYR 320

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKR 399
               RFE  G  + G  +  DYAH    ++  +   +    GR +VV+            
Sbjct: 321 GSSRRFEVYGEVA-GVTVIDDYAHHPTEVQATIAAAQQRYPGRRVVVYVQPHTFSRTRSL 379

Query: 400 PIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIPGFIEKGN----RIEAIRTAI 453
                 A   A I  + D  P  E  DP  +  E++  +  +    +       A    +
Sbjct: 380 WERWPEACRAAAIVSIGDVYPAREQGDPVALATELVAYLVAYGVVAHYGGGIATAAERLV 439

Query: 454 EMLNKQDVLVVAGKGH 469
            ++   DV++V G G 
Sbjct: 440 ALIQPGDVVLVLGAGD 455


>gi|299536844|ref|ZP_07050151.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
 gi|298727668|gb|EFI68236.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
          Length = 461

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 158/432 (36%), Gaps = 41/432 (9%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +FV    ++ D H+   +   +G   I+     +          NT +L V +  +    
Sbjct: 44  LFV----SRND-HINWQEIDRKGPSLIISDKPSTELK---NALENTTVLQVKSVAQAYWA 95

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           F     G     ++A+TGT GK++    ++ I  +           +++SS  +  +   
Sbjct: 96  FIEYYRGLFEIPVVALTGTCGKTTTKEMLKHIASK------HWQVQASVSSKNEPRQSLP 149

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                  K  + +   G+        + G  +H+    +   G  TN+G  H+D     +
Sbjct: 150 YLTGIDDKTQAAIFELGL-------GNTGNIKHQCMIYQPTIGIITNIGVHHLDGCLNLE 202

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVC 283
            Y  AK  + E  + ++   II ADDA +K++         +++  G Q        KV 
Sbjct: 203 GYIKAKAEIVEG-IKEDGTLIINADDANTKKI--SLKRFKGKIIKFGLQDTADYKASKVE 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +   +  + V  + ++   P  GE QVYNAL A      +G+     +  L     + 
Sbjct: 260 FANTGMKFVLEVADERYNVFVPGYGEHQVYNALAAIAASHEMGLTIRQAIAGLRTFKQMA 319

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF----GCGGDRDQGK 398
              EF         I   + +   S+E  LK I T+    ++I+V       G   ++  
Sbjct: 320 RHLEFTTGLGDSTIIDDTWTNNPTSVEAALKVIDTVGKDKKVILVLGDIKRLGNFEEKYH 379

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           R I   +A+   D  I        +  EKI  +         E     E +   +E+L  
Sbjct: 380 REIGSMVAVRKIDTLITI-----GKRAEKIADQAQKDGTSA-EVHTFKE-VAGVLELLKP 432

Query: 459 ----QDVLVVAG 466
                 ++++ G
Sbjct: 433 KLDADTIVLIKG 444


>gi|311693453|gb|ADP96326.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [marine bacterium
           HP15]
          Length = 446

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 128/350 (36%), Gaps = 39/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GK++V + V ++ + +G +    G   T +                    
Sbjct: 109 APIVAITGSNGKTTVTTLVGEMAKAAGRNVAVGGNIGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  QG     +E SS  L+    D +  +A +  NL  DH+D +  + AYF AK R+F
Sbjct: 149 LDLLGQGADLYVLELSSFQLE--TTDELNALAATVLNLSDDHMDRYPNKMAYFQAKQRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                    AI+  DDA S  + +       R L  G+                  +T  
Sbjct: 207 RGC----KNAIVNLDDALSTPMARD----NLRFLCFGFHRVNPETFSTRDDDQGTWITFG 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L G   + N + A  L  A G+   ++L    +   +P R EFV     
Sbjct: 259 FDNLLLASELKLMGHHNISNVMAALALGHAAGLPMDVMLRVAREFPGLPHRCEFV--RRL 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               +++ +  +N    +            +V+   G  +      +   IAL    + +
Sbjct: 317 NDVDFINDSKGTNVGATVAAIESLAPDKGKVVLIAGGDGKGADFTALEAPIALHCRAVLL 376

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  D P       I   +  GIP     G+  EA+  + E+    D +++
Sbjct: 377 IGRDAP------AIADVLGSGIP-VHRVGSLAEAVSRSAELAMPGDRVLL 419


>gi|159030200|emb|CAO91092.1| murC [Microcystis aeruginosa PCC 7806]
          Length = 478

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 130/413 (31%), Gaps = 54/413 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S+A +  +       +    +   +    +L A         + +AV GT GK++ +
Sbjct: 86  VICSTAINDHNKEYQAARDLGYPIFHRSDVLAALIADY-------DSIAVAGTHGKTTTS 138

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +   +GL    I                    +   +  + L          + S
Sbjct: 139 SLIGYVLLEAGLDPTII----------------VGGEVDAWEGNARLGQGRFLVAEADES 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
              L +H         G  TN+  DH D++Q      +     F E   +    +   D 
Sbjct: 183 DGSLTKH-----APKIGVITNIELDHPDHYQNLSEVIDT----FHEFAHQCQILVACLDC 233

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
               E            +S       G    + ++       + ++  +G         +
Sbjct: 234 DTIAE-------HFRPTISYSLDPEKGADYTVSEIIYEQGMMKASVWEKGSYLGQMEVKI 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + NAL    +   +G++ A++ + +        RFE  G  + G     DYAH  
Sbjct: 287 PGQHNISNALAVVAIGRYLGLEFAVIADAIATFAGAKRRFEHKG-EANGITFIDDYAHHP 345

Query: 367 NSLEMILKNIRTITSGRI----IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           + L   L   +    G+     I +F                 A   AD+ ++TD     
Sbjct: 346 SELLATLAAAKLKVEGKQYQRSIAIFQPHRYSRTTAFLEEFGSAFSSADVVVLTDIYSAG 405

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E        +++  ++                 +  +E+L   D+ +  G G+
Sbjct: 406 EVNINHVTGQQVAEQVRKHHKNAYYHPELSSLGQFLLEILQPGDLALFLGAGN 458


>gi|167764155|ref|ZP_02436282.1| hypothetical protein BACSTE_02539 [Bacteroides stercoris ATCC
           43183]
 gi|167698271|gb|EDS14850.1| hypothetical protein BACSTE_02539 [Bacteroides stercoris ATCC
           43183]
          Length = 461

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 122/364 (33%), Gaps = 39/364 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S      +G T+ +   +++              
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLFHQS-----HVGCTAFLGGISKNYGT----------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L S    +  +EA       H L          T+   DH+D + T++AY  +  R 
Sbjct: 155 -NLLLSPASPYTVIEADEFDRSFHWLS---PYMSVITSTDPDHLDIYGTREAYLES-FRH 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +  L+      II    A   +V       G R  +        H + +   + +  +  
Sbjct: 210 YTTLIQPGGALIIRKGLALQPDV-----QPGVRTYTYSRDEGDFHAENIRIGNGEIVIDF 264

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    +P    + N + A  L    G+    + + +     V  RF+F    
Sbjct: 265 IAPDTRINDIRLGVPIGINIENGVAAMALAHLNGVTDEEIRQGMASFRGVDRRFDFKIKT 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            R      DYAH    +   +K+IR      +I  +F                 +L L D
Sbjct: 325 DR-LVFLSDYAHHPAEIAQSVKSIRELYRDKKITAIFQPHLYTRTRDFYKDFADSLSLLD 383

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+T+  P  E P      + I   +  GI   I    R E I   +      +VL+V 
Sbjct: 384 EVILTEIYPAREQPIPGVSSQLIYDNLRPGIEKCIC---RKEDIPDLLSK-KPVEVLIVL 439

Query: 466 GKGH 469
           G G 
Sbjct: 440 GAGD 443


>gi|114777866|ref|ZP_01452797.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551857|gb|EAU54397.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 130/367 (35%), Gaps = 35/367 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++E+++D+R  ++G  F+A+ G   DGH F            ++  A  ++ + +     
Sbjct: 24  VSEIATDTRGFKSGQCFLALRGPHFDGHRFAAPIADA--ACALIGDARGMRYWESLP--- 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            P L V++T + L   A     +  +  ++A++G+ GK+S+ S +Q      GL      
Sbjct: 79  VPQLQVEDTLRALGDIAHAWRMQLKQTTVVAISGSFGKTSLRSLLQHGFSALGLH----- 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +S+   +       P  L   L+  +   +  +    S  G  +     ++     
Sbjct: 134 ----VSATTANLNNLIGVPKTL---LAVPADATLALIECGISEVGEMERLSAIVQPDVAV 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +   H +           K  LF  L    + A     +  + ++ +   +    +L
Sbjct: 187 LTGITNAHGEGLGGLAGVVEEKAALFSHL---NTGAWCALGEGVADQLGRHHISQPADLL 243

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            V        L         Q +      +       LP      N  +AA + + + + 
Sbjct: 244 DVEQSELSWRLD-------GQCLHFQRGDEQSQIELSLPARHWATNMHLAACIIMRL-MP 295

Query: 329 SALVLE---HLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
            A + +    L       GR + V T S G ++  D Y     S++  +  +  +  G  
Sbjct: 296 EARLNDVAQALASWQAPAGRMQ-VRTGSGGCKVLDDSYNANPVSMQAAIDTLVAM-PGCR 353

Query: 385 IVVFGCG 391
           I V G  
Sbjct: 354 IAVLGDM 360


>gi|284039600|ref|YP_003389530.1| UDP-N-acetylmuramate/alanine ligase [Spirosoma linguale DSM 74]
 gi|283818893|gb|ADB40731.1| UDP-N-acetylmuramate/alanine ligase [Spirosoma linguale DSM 74]
          Length = 461

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 119/378 (31%), Gaps = 35/378 (9%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L L A ++        + V GT GK++ +S V  I + SG++           +F   
Sbjct: 104 QVLGLLAGQM------TTIGVAGTHGKTTTSSMVAHILRDSGVNCA---------AFLGG 148

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                 +   L +    L S      + E     L               T+   DH+D 
Sbjct: 149 ITNNYGTNFLLNEPADDLKSVVCVVEADEFDRSFLTLF------PKYAIVTSTDADHLDI 202

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           +    A   +  +   ++ P            + K+ +         V     +    + 
Sbjct: 203 YGAHDAVLESFGKFVGQIEPDG--------VLFMKKGLSLTDKTQAAVRPYSLKEGDYYS 254

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           + +   +      +   G    D    +PG   V NA+ A  + + +G+    +   L  
Sbjct: 255 QNLRIENASFVFDLVYPGGVIADIHLLVPGFHNVENAVAAGAVALEVGVSPEAIRSALTS 314

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQG 397
              V  RFE++   +       DYAH    +E  L +++ +   R I  +F         
Sbjct: 315 YRGVRRRFEYI-LKTDSTVFIDDYAHHPAEVEAFLSSVKALYPNRDITAIFQPHLFSRTR 373

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                   +L LAD  I+ D  P  E P +      I   I    +       +   +  
Sbjct: 374 DFADGFAESLSLADHVILLDIYPARELPMEGVTSDLIFRNIHSKTKIKCTKAELVNVLRE 433

Query: 456 LNKQDVLVVAGKGHETVH 473
           +    +LV  G G     
Sbjct: 434 MKPS-LLVTIGAGDIDQQ 450


>gi|225860677|ref|YP_002742186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229802|ref|ZP_06963483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254818|ref|ZP_06978404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502480|ref|YP_003724420.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|254766062|sp|C1CQG4|MURD_STRZT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225728254|gb|ACO24105.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238075|gb|ADI69206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327390416|gb|EGE88757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA04375]
 gi|332075981|gb|EGI86447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41301]
 gi|332203845|gb|EGJ17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47368]
          Length = 450

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 148/430 (34%), Gaps = 58/430 (13%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------LFASRLYGKHPENILAVTG 122
           ++   ++L   +  I  N P++      K L+           A  +       I+ +TG
Sbjct: 68  LLDEEFALMVKNPGIPYNNPMI-----EKALAKGIPVLTEVELAYLISE---APIIGITG 119

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++  + + ++   +G      G    I   A            L   LS     GV
Sbjct: 120 SNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIATDKNTLVMELSSFQLMGV 176

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                                      TNL   HIDYH   + Y  AK  + +  +    
Sbjct: 177 QEF-----------------HPEIAVITNLMPTHIDYHGLFEEYVAAKWNI-QNKMAAAD 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  +   +K++  +         ++         K   A     Q+    E      
Sbjct: 219 FLVLNFNQDLAKDLASKTEATVVPFSTLE--------KVDGAYLEDGQLYFRGEVVMAAN 270

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NAL    +    G+D+  + E L     V  R +FV  + +G + Y D 
Sbjct: 271 EIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-DIKGVKFYNDS 329

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +    K +        +V+   G DR      ++  I   L  + I+       
Sbjct: 330 KSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVIL------G 379

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           +  E+++         ++E  +  +A R A E+  + DV++++   + +  +  N E + 
Sbjct: 380 QSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDMYANFEVRG 438

Query: 483 SVDCDIIREI 492
            +  D + E+
Sbjct: 439 DLFIDTVAEL 448


>gi|311063967|ref|YP_003970692.1| UDP-N-acetylmuramate--alanine ligase MurC [Bifidobacterium bifidum
           PRL2010]
 gi|310866286|gb|ADP35655.1| MurC UDP-N-acetylmuramate--alanine ligase [Bifidobacterium bifidum
           PRL2010]
          Length = 529

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 129/451 (28%), Gaps = 76/451 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I +V  +     + A  + G+    ++ V G  G
Sbjct: 87  RGADTVVYSSAIKPDNPEIVAAHERGIRIVHRS----DILALLMNGR---RVVTVAGAHG 139

Query: 126 KSSVASFVQQICQRSG-----LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K++ +S +  I   +G       S+ IG T      A  +         L          
Sbjct: 140 KTTTSSLLSHILVHAGTGELADPSYAIGGTIQAPGGAVLDGGHAGRGDVLVAEADESDGS 199

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              +                  +      TN   DH+D++  +  Y  A     +     
Sbjct: 200 FCKY------------------RPSIAVITNALADHLDHYGDEAHYCAA---FIDHAGHA 238

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFI------------HLKKVCAIHN 287
               ++  DD  +  V++    +  R  +    +                  +   A   
Sbjct: 239 SGHVVMTGDDEGAVAVLRDLDPSVARRTIVYATKDADQIGDLRGATLVRIDAEHESADSG 298

Query: 288 KQQVTISVE------------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++  T+ V                      +PG     NA  A    + +G+      + 
Sbjct: 299 RETFTVHVPASLASVCGCGDADLALPVSLAIPGMHNARNATAAILAAMLLGVTPEAATQA 358

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDR 394
                    RF+  G    G  +  DYAH    +  +L   R      +I V+F      
Sbjct: 359 ASTFLGASRRFQVRGEE-NGVTVVDDYAHHPTEISALLDAARRRYPRSVIRVLFQPHLFS 417

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRA----EIIHGIPGFIEKG---- 443
                      AL  AD  IVT   P  E   D   + A    +    +P    +G    
Sbjct: 418 RTRMFAHEFAEALSKADDVIVTGIFPARELQRDFPDVSAMTIVDAAQDVPHASAQGDGTW 477

Query: 444 -----NRIEAIRTAIEMLNKQDVLVVAGKGH 469
                +   A +         DV+   G G 
Sbjct: 478 ISAVDDMQVAAQMLAMRCRPTDVVFTVGAGD 508


>gi|218753875|ref|ZP_03532671.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           GM 1503]
 gi|289762314|ref|ZP_06521692.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
 gi|289709820|gb|EFD73836.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
          Length = 495

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 100/294 (34%), Gaps = 34/294 (11%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ + +AY  A    F E +      ++  DD     + +RA   
Sbjct: 184 PHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGALVVCTDDPGGAALAQRATEL 242

Query: 264 GCRVLSVG-YQGKFIHLKKVCAIHNKQQV--------TISVEGKDFDFLFPLPGEFQVYN 314
           G RVL  G   G+ +    V                  ++           +PG     N
Sbjct: 243 GIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVPGRHMALN 302

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
           AL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    +  
Sbjct: 303 ALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTEISA 362

Query: 372 ILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L   R +      GR +VVF                 AL+ AD   V D     E P  
Sbjct: 363 TLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGRALNAADEVFVLDVYGAREQP-- 420

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHET 471
                + G+ G     +    +R                +  DV+V  G G  T
Sbjct: 421 -----LAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIVTMGAGDVT 469


>gi|168492240|ref|ZP_02716383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573524|gb|EDT94052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
          Length = 450

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 131/378 (34%), Gaps = 41/378 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G      G    I   A            L   L
Sbjct: 112 APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKDTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     GV                           TNL   HIDYH +   Y  AK  + 
Sbjct: 169 SSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVAAKWNI- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +      ++  +    K++  +         ++         K   A     Q+   
Sbjct: 211 QNKMTAADFLVLNFNQDLVKDLASKTEATVVPFSTLE--------KVDGAYLEDGQLYFR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    G+D+  + E L     V  R +FV  + +
Sbjct: 263 GEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-DIK 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +V+   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       +  E+++         ++E  +  +A R A E+  + DV++++   + +  +
Sbjct: 378 L------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDM 430

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E +  +  D + E+
Sbjct: 431 YANFEVRGDLFIDTVAEL 448


>gi|241895692|ref|ZP_04782988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871059|gb|EER74810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
          Length = 444

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 137/391 (35%), Gaps = 40/391 (10%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQ 134
              L   +  I    PIL     R    +    L  K+  EN +AVTG++GK++    + 
Sbjct: 63  DIDLIVKNPGIPYTIPILTAAEERHIPIVVEVALAQKYIQENWIAVTGSNGKTTTTEMIA 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + +        +     I +   +          L   LS     G+            
Sbjct: 123 SVLRTQ-TGDGHVLVAGNIGTPVSEVAPKMLKDDVLVTELSSFQLTGMPAP--------- 172

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   K      TN+   H+++H T++ Y  AKM + +     +   ++  D+   +
Sbjct: 173 --------KPHIAVLTNIFASHLNFHGTRENYVAAKMNITKHQTAAD-FFVVNYDNEEWR 223

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            + ++ +         G      +LK   +++ K++  I+ +         +PG   + N
Sbjct: 224 HLAEQTNATIVPFSRKGVSEAGAYLKN-GSLYYKEEFIIAAD------ELGVPGTHNIEN 276

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  +   + +++  +   L     V  R +F+G            A    + EM L 
Sbjct: 277 ALAAIAVGKLMRVETTNIAGALRSFSGVEHRLQFIGNFYDRPVYNDSKATDIEATEMALS 336

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                     +++   G DR   +  ++  +   +  + +        E  EK+ A    
Sbjct: 337 GF-----NVPVILLAGGLDRGDDQMRLLSAMKQHVKGLIVF------GETAEKLAAVGKK 385

Query: 435 -GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GIP  +   +   A++ A E+    +V+++
Sbjct: 386 IGIP-VLYAKDAPSAVKPAFELSEAGEVILL 415


>gi|149010691|ref|ZP_01832062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765172|gb|EDK72101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
          Length = 450

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 153/444 (34%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T     
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTASDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH   + Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGLFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         +   +       +   ++ +
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKDLTSKTEATVVPFST--LEKVDGAYLEDGQLYFR 262

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +V ++           +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 263 GEVVMAAN------EIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 317 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|227513548|ref|ZP_03943597.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC
           11577]
 gi|227083421|gb|EEI18733.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC
           11577]
          Length = 443

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 121/377 (32%), Gaps = 60/377 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+G  GK+S    +  +      + + IG  S       + R          +     
Sbjct: 107 IGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGS--GRGVPNARFFVYEADEYRRHFL-- 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY++      +A  + F   
Sbjct: 163 -----------------------ATKPDYAIMTNIDFDHPDYYKNIDDVQDA-FQTFANQ 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
             K   A  + DD   +++      A   +   G           V          +  +
Sbjct: 199 TKKGIFA--WGDDKRLRKL-----KAKIPIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFK 251

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F  PL GE  ++N+L    +  +  +D   +   L+    V  RF     +  G
Sbjct: 252 GKDLGEFTVPLFGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTFDGVKRRFSERKIS--G 309

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  +   R    S +I VVF                 +L+LAD   
Sbjct: 310 MTIIDDYAHHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAKSLNLADEVF 369

Query: 415 VTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGK 467
           +T     PR E   K+ +E    +   I KG RI     + + ++       DV++  G 
Sbjct: 370 LTQIYSSPR-ESSGKVSSE---DLSRKITKGGRI----LSSDNMSPLLDYDNDVIIFMGA 421

Query: 468 GHETVHIVTNGEKKMSV 484
           G      +   EK    
Sbjct: 422 GD-----IQKYEKTYED 433


>gi|226953384|ref|ZP_03823848.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|226835861|gb|EEH68244.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ATCC 27244]
          Length = 481

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 123/366 (33%), Gaps = 41/366 (11%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVS+A   ++    A I   TPI+      + L       +G      +AV GT G
Sbjct: 81  ADVLVVSTAIDPENPEVKAAIEQRTPIV---RRAEMLGELMRYRHG------IAVAGTHG 131

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +          + PT  I                         +  +   
Sbjct: 132 KTTTTSLLTTMLAE-----GNLDPTYVIGGLLNSTG----------------VNAALGDS 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  +           ++ +A   TN+  DH+D ++            F   LP    A+
Sbjct: 171 RIIVAEADESDASFLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAV 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DDA  +E++ R       VL+ G+     I    V     +   T+  + ++     
Sbjct: 231 VCGDDANIREILPRVGRP---VLTYGFDEDNDIRAIDVEQDGMRSHFTVLRKDREPLRVT 287

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYV 360
              PG   V NAL A G+    G+    +   L     V  RF+  G    G    ++  
Sbjct: 288 VNQPGLHNVLNALAAIGVATDEGVSDDAICRALAGFSGVGRRFQVQGEFEVGDGLVKLVD 347

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +E  +K  R +    R++++F                  L   D  ++ +  
Sbjct: 348 DYGHHPKEVEATIKAARASHPDRRLVMLFQPHRYSRTRDCFDDFVEVLSQVDQLLLLEVY 407

Query: 420 PRSEDP 425
              E P
Sbjct: 408 SAGEKP 413


>gi|254495866|ref|ZP_05108776.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
 gi|254354902|gb|EET13527.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
          Length = 458

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 139/419 (33%), Gaps = 49/419 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ +V SSA  + +          I V+      L+      +G      +AV GT G
Sbjct: 62  QGADVVVRSSAVGMNNPEVVAAREQLIPVIPRA-AMLAELMRFRHG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   SF IG     +        +    +   ++ +         
Sbjct: 115 KTTTTSLVSSLLAEGGLDPSFVIGGKLNSAGVNAKLGQSPYFVVEADESDASFL------ 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +K +    TN+  DH+  ++            F   LP    A
Sbjct: 169 ----------------FLKPMMAIVTNIDADHMSTYEDNFDKLRTTFLEFLHHLPFYGLA 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTIS--VEGKDFD 301
           ++  DD   + +++         L+ G+  +  +            + T++        +
Sbjct: 213 VVCTDDPEVRNILQSIERP---TLTYGFNDEAHYRAVDWTQNELLSEFTVARPAPYPPLN 269

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRI 358
             F  PG   V NAL A  +   +G+  A ++  L K   V  RF+ +G          +
Sbjct: 270 ICFQYPGRHNVLNALAAIAIATELGVSDAAIVSALAKFQGVGRRFQMLGEKHFERGSALV 329

Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    +   +   R +  + R++ VF                  L L+D   + D
Sbjct: 330 VDDYGHHPQEIFSTIDAFRRVWPNKRLVHVFQPHRYSRTQSLHDQFVDVLSLSDKLFLFD 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAI-EMLNKQDVLVVAGKGH 469
                E    I      G+   I   +        ++++  + E +   DV+++ G G+
Sbjct: 390 IYSAGE--AAIPGISSEGLAQKIRGNDKNVTMVNEQSLKMQLDEFILDGDVILIQGAGN 446


>gi|169351140|ref|ZP_02868078.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
 gi|169292202|gb|EDS74335.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 131/350 (37%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ + VTGT+GK++  + + +I +        +     +     D  L            
Sbjct: 108 QHYIGVTGTNGKTTTVTLIDKILK---GQYQNVHLAGNVGMPLCDIVLDHN--------- 155

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  +   ++ +E S+  L    +D  K    +  NL  DH+DY  +   Y+ +K  ++
Sbjct: 156 --LLEEENHYIVIEMSNFQLLD--IDTFKPNVSTIINLTPDHLDYMASLDEYYASKTNIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    K    ++  DD    + +K+     C+ +++    +   + K  AI+ + +  I 
Sbjct: 212 KN-TNKNDCFVVNLDDQVLDKYLKQYP-IPCKQITMSLDNQADCMIKDKAIYYQNEFIID 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         L G   + N ++A  +     + + ++ + +     V  R EFV     
Sbjct: 270 LDD------IKLVGNHNLQNIMIAICIAKKCDVKNEIINQEIASFIGVEHRIEFVK-EIN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G +IY D   T+   +  +  ++     + +++   G D+    + +    +  +  +  
Sbjct: 323 GIKIYNDSKATNT--DASIIALKAF--KQPVILLMGGFDKGLDLKEMSTY-SNKIKRLVT 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 R +D           +   I   N  EA   AI      D++++
Sbjct: 378 FGAAGKRFKDEM--------HVENSICVKNLKEATLEAINNATAGDIVLL 419


>gi|319778584|ref|YP_004129497.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Taylorella equigenitalis
           MCE9]
 gi|317108608|gb|ADU91354.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Taylorella equigenitalis
           MCE9]
          Length = 443

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 78/363 (21%), Positives = 138/363 (38%), Gaps = 33/363 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            ++++AV+GT GK++  S +  I Q +G   +F IG  +    F    R  + S  ++ +
Sbjct: 90  SQHVIAVSGTHGKTTCTSMLTHILQSAGLNPNFLIGGIA--KDFNISARFNSQSKFFVIE 147

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y ++                               N+  DH D     +A  N +  
Sbjct: 148 ADEYDTAFFDKRSKFVHYH------------ANTAIINNIEYDHADIFPDLKAIEN-QFH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F  +LP+    I+  +D     ++ R     C+ + +G  G + +   V    + Q   
Sbjct: 195 NFVRILPRNGTLIVPKNDETIDRILSR--GLYCQKIEIGDGGTWSY---VNISDSTQNFD 249

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I  +G++     + + G   + NAL        IG+  AL +E L     +  R E VG 
Sbjct: 250 ILKDGQNVGHINWEMTGLHNIKNALSCIAAADVIGVKPALAIEALNNFSGIKRRMEVVG- 308

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCG-GDRDQGKRPIMGKIALDL 409
           N     IY D+AH  +++   +  +R  +   RII VF         G        AL  
Sbjct: 309 NPNNITIYDDFAHHPSAIATTIDGLRKKVGDPRIIAVFEPRSNTMKLGTMAKFLPEALKN 368

Query: 410 ADIAIVTDD----NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +  +    +     PE+I     + +  + E     +AI   +E +   D +V+ 
Sbjct: 369 ADQIYIYGELHGKHALGWTPEEIFGSQTN-VHIYHEVDKLKDAI---LEEVKSGDHVVIM 424

Query: 466 GKG 468
             G
Sbjct: 425 SNG 427


>gi|225856379|ref|YP_002737890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae P1031]
 gi|225858514|ref|YP_002740024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae 70585]
 gi|254766057|sp|C1C648|MURD_STRP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766061|sp|C1CJF2|MURD_STRZP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722058|gb|ACO17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 70585]
 gi|225725603|gb|ACO21455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae P1031]
 gi|301793866|emb|CBW36259.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV104]
 gi|332204703|gb|EGJ18768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47901]
          Length = 450

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 149/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A           
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH +   Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKDLTSKTEATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 317 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|294651909|ref|ZP_06729199.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822232|gb|EFF81145.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 481

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 123/366 (33%), Gaps = 41/366 (11%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVS+A   ++    A I   TPI+      + L       +G      +AV GT G
Sbjct: 81  ADVLVVSTAIDPENPEVKAAIEQRTPIV---RRAEMLGELMRYRHG------IAVAGTHG 131

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +          + PT  I                         +  +   
Sbjct: 132 KTTTTSLLTTMLAE-----GNLDPTYVIGGLLNSTG----------------VNAALGDS 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  +           ++ +A   TN+  DH+D ++            F   LP    A+
Sbjct: 171 RIIVAEADESDASFLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAV 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +  DDA  +E++ R       V++ G+     I    V     +   T+  + ++     
Sbjct: 231 VCGDDANIREILPRVGRP---VITYGFDEDNDIRAIDVEQDGMRSHFTVLRKDREPLRVT 287

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYV 360
              PG   V NAL A G+    G+    +   L     V  RF+  G    G    ++  
Sbjct: 288 VNQPGLHNVLNALAAIGVATDEGVSDDAICRALAGFSGVGRRFQVQGEFEVGDGLVKLVD 347

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +E  +K  R +    R++++F                  L   D  ++ +  
Sbjct: 348 DYGHHPKEVEATIKAARASHPDRRLVMLFQPHRYSRTRDCFDDFVEVLSQVDQLLLLEVY 407

Query: 420 PRSEDP 425
              E P
Sbjct: 408 SAGEKP 413


>gi|307244134|ref|ZP_07526252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492505|gb|EFM64540.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 454

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 147/372 (39%), Gaps = 52/372 (13%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V +IC+ +GL ++ +G                          +   +Q    + +E S
Sbjct: 126 SIVGEICKEAGLDTYVVGNIGN------------------PAISAVEEAQPGAVLVIELS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   +   +    +  NL  DH++ H T + Y  AK  +F +  P ES  ++  DD
Sbjct: 168 SFQLEA--VYDFRPEVSTVLNLTEDHMNRHHTMENYAKAKANIFAKQTP-ESVCVLNYDD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
             ++++                    I+L         + +    +G++ + +      L
Sbjct: 225 PITRDMGNTCQARPVYFSRQSRPEAGIYLDD------NKNIIAVKDGREVEIVNAEDLSL 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + N++ A GLC+  GID  ++ + L     V  R E+V T +  G +YV+ +  +
Sbjct: 279 PGGHNLENSMAAIGLCLHFGIDKEIIKKVLTTFKAVEHRLEYVNTVN--GVVYVNDSKGT 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           N  +  +K +++      I++   G D+    R +       +  + ++       +  +
Sbjct: 337 NP-DSTIKAVQSY--KTPIILIAGGYDKGSDFRELFDIAVNYVRTVLVI------GQTAD 387

Query: 427 KIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV----AGKGHETVHIVTNGEKK 481
            I       GI    +  +  EA+  A ++ +K DV+++    A  G     +  N E++
Sbjct: 388 LIADTAFKAGIKEIYKLDSLKEAVIKASQIADKDDVVLLSPACASWG-----MYKNYEER 442

Query: 482 MSVDCDIIREIL 493
                DI+  IL
Sbjct: 443 GQEFKDIVNNIL 454


>gi|269792481|ref|YP_003317385.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100116|gb|ACZ19103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 462

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 129/358 (36%), Gaps = 45/358 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ VTG++GK++  S +  +   +G+S+   G                         L
Sbjct: 108 SPVVGVTGSNGKTTTTSILGHVLNAAGVSTAVAGNIGN--------------------PL 147

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +   G T   V A       H  +      G  TNL  DHID+H + + Y  AK RL 
Sbjct: 148 GSVPLSGETPSLVVAELSSFQLHWCEEASFAGGVVTNLAPDHIDWHGSYENYVLAKRRLI 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E   P     +  AD       + R  +   R+  + +       + V      Q   + 
Sbjct: 208 ERTGPDGFAVVQLADLD-----ILRGGSGSVRLYPLSW---DKVEQGVHLDDAAQVALLL 259

Query: 295 VEGKDFDF----LFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + G   +        L G   + NA +A     + +          + +    P R E V
Sbjct: 260 MNGSVRELFRFDQVRLLGRHNLENAAMALCAANLVLNRPLNGEDGRIGEFMAPPHRCELV 319

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           G    GG  +VD +  +N +   +  +R++    G   V+   G  + +  + +   ++ 
Sbjct: 320 G--RYGGVTFVDDSKGTN-VAATVTALRSLKCDPGGTKVILLGGRGKGEDYQVLAQTVSE 376

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +   +        E+ ++I   +   G   +   G+  EA+R A +   + D++++
Sbjct: 377 ECSYAVLY------GEEGDRIAEALSKAGFNRWSRVGSLDEAVRVAFQRTKEGDMILL 428


>gi|332557537|ref|ZP_08411859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
 gi|332275249|gb|EGJ20564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
          Length = 465

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 140/446 (31%), Gaps = 65/446 (14%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           G   +V S      Y   +      +   + V ++   F   FA+R +    +   ++ V
Sbjct: 66  GVALLVTSPGIPHLYPAPNPVIARATAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+  + +  I   +G  +   G                         L    ++
Sbjct: 126 TGSNGKSTTTALIHHILSEAGRPTQMAGNIG-------------------RGVLDLDPAR 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 167 DGEVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   +  D+     +  +        RV+ +    K                    +G+
Sbjct: 225 RAVIGV--DEPEGLYLAGQLSVAPEDDRVIRISAGQKLERFGWSVFARKGFLAEWR-KGR 281

Query: 299 -----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                D   +  LPG     NA  A   C  +G+    +   L     +P R + VG   
Sbjct: 282 QMASIDLRAMPGLPGAHNHQNACAAYAACRTLGLAPRQIEAALASFAGLPHRSQTVGEKG 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT------SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +    A   +S    L+    I            +V          K  ++G  A 
Sbjct: 342 GVRFVNDSKATNVDSAAKALQAFPKIRWIAGGLGKDGGIVALQPHLGSVVKAYLIGHSAR 401

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D A     TD         +I   +   +    E+                 +V+++A  
Sbjct: 402 DFALQIGATD--------HEICETMERAVARAAEEA-------------QPGEVVLLA-P 439

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
              +     N EK+     + ++ +L
Sbjct: 440 AAASFDQYPNFEKRGEDFMEKVKALL 465


>gi|256820163|ref|YP_003141442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581746|gb|ACU92881.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/417 (16%), Positives = 151/417 (36%), Gaps = 48/417 (11%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSG 141
           S  I    PI+   + +    +       ++ ++++  +TG++GK++       I + +G
Sbjct: 69  SPGIPDKAPIIKKAHEKGIAVISEIEFASQYTDSLIVGITGSNGKTTTTLLTYHIFKEAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L   Q+G    I                       ++++   +  +E SS  LD   ++ 
Sbjct: 129 L---QVGLGGNIG----------------YSFAELVATKNPPYYVLEISSFQLD--GIEH 167

Query: 202 IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    N+  DH+D +    + Y ++K R+      +    I  ADD    + +   
Sbjct: 168 FAPHIAVLLNITPDHLDRYDYKFENYIDSKFRI-AMNQTENDYLIYDADDEVITQWLS-T 225

Query: 261 HNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           H    +++         QG F+   K+  +   Q   I VE         L G+  + N 
Sbjct: 226 HTIKSKLIPFSIEKELPQGAFLKDNKIYIMLENQTTEIDVE------EISLRGKHNIKNT 279

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A+     + I +  + E L+     P R E V        +    A   NS+      
Sbjct: 280 MAASVAARLVNIRNNSLRESLKGFKGAPHRLEEVKVVDGVTYVNDSKATNVNSV---FYA 336

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           + TI +  + +V   G D+      ++  +   +  I  +  DN        I     + 
Sbjct: 337 LDTIKTPIVWIV--GGQDKGNDYNSLLPYVHEKVRAIVCLGVDNT------PIIQSFYNT 388

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           I   +E  +  EA++ A     + D ++++     +  +  N E++  +    ++++
Sbjct: 389 IDTLVETRSMDEAVKLAQSFAQEGDTVLLS-PACASFDLFKNYEERGDLFKAAVQKL 444


>gi|149020325|ref|ZP_01835217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
 gi|147930627|gb|EDK81609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
          Length = 450

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 131/378 (34%), Gaps = 41/378 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G      G    I   A            L   L
Sbjct: 112 APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKDTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     GV                           TNL   HIDYH   + Y  AK  + 
Sbjct: 169 SSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGLFEEYVAAKWNI- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +      ++  +    K++  +         ++         K   A     Q+   
Sbjct: 211 QNKMTAADFLVLNFNQDLVKDLASKTEATVVPFSTLE--------KVDGAYLEDGQLYFR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    G+D+  + E L     V  R +FV  + +
Sbjct: 263 GEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-DIK 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +V+   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       +  E+++         ++E  +  +A R A E+  + DV++++   + +  +
Sbjct: 378 L------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDM 430

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E +  +  D + E+
Sbjct: 431 YANFEVRGDLFIDTVAEL 448


>gi|194397716|ref|YP_002037343.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae G54]
 gi|226722946|sp|B5E2Z8|MURD_STRP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4009480|gb|AAC95449.1| D-glutamic acid adding enzyme MurD [Streptococcus pneumoniae G54]
 gi|194357383|gb|ACF55831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae G54]
          Length = 450

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 131/378 (34%), Gaps = 41/378 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G      G    I   A            L   L
Sbjct: 112 APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIATDKNTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     GV                           TNL   HIDYH   + Y  AK  + 
Sbjct: 169 SSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGLFEEYVAAKWNI- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +      ++  +    K++  +         ++         K   A     Q+   
Sbjct: 211 QNKMTAADFLVLNFNQDLVKDLASKTEATVVPFSTLE--------KVDGAYLEDGQLYFR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    G+D+  + E L     V  R +FV  + +
Sbjct: 263 GEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-DIK 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +V+   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       +  E+++         ++E  +  +A R A E+  + DV++++   + +  +
Sbjct: 378 L------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDM 430

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E +  +  D + E+
Sbjct: 431 YANFEVRGDLFIDTVAEL 448


>gi|284030820|ref|YP_003380751.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
 gi|283810113|gb|ADB31952.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
          Length = 479

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 141/450 (31%), Gaps = 92/450 (20%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + +A  A+ +VVS+A    +          I ++       S+ A R       
Sbjct: 66  GH--AAEHVAN-ADTVVVSTAIRETNPEVVAAQAAGIPILPRAAALASVMAGR------- 115

Query: 116 NILAVTGTSGKSSVASFVQQICQR-SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +    Q  +   S+ IG      +  +           L  A 
Sbjct: 116 RTIAVAGTHGKTTTTSMLTVALQHCAADPSYAIG-----GNLNESGSNAHDGTGDLFVAE 170

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  S +       E S                   T++  DH+D +  + +Y  A    F
Sbjct: 171 ADESDKSFLTYGPEVS-----------------IVTSVEPDHLDNYGDEASYTKA-FEDF 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
            + +      +I  DDA ++ +   A   G  V + G      + + ++ A    Q    
Sbjct: 213 CDRVLPGGFLVICVDDAGARRLAGFARERGIDVRTYGESADADLRVTEITATGAVQSFVP 272

Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              G+    +     G+    NA  A  + + +G  +A + E L        RFEF G  
Sbjct: 273 VWRGRKLPVVNLQQAGKHNALNASAALAVGLGLGFSAADLAEGLASFTGTGRRFEFKGQE 332

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             G R+Y  YAH    L + L   R +   GR+I  F                 AL LAD
Sbjct: 333 -DGVRVYDSYAHHPTELAVDLTAARQVAGEGRVIACFQPHLFSRTRIFATEFSAALALAD 391

Query: 412 IAIVTDDNPRSEDPE------------------------------KIRAEIIHGIPGFIE 441
             +V D     EDPE                               +             
Sbjct: 392 EVVVMDVFAAREDPEPGVTGALIANHVPLKPEQVRFEPSWSAVPRVVAD----------- 440

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                        +    D++V  G G  T
Sbjct: 441 -------------LALPGDLVVTLGAGDVT 457


>gi|332142423|ref|YP_004428161.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552445|gb|AEA99163.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 481

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 141/429 (32%), Gaps = 52/429 (12%)

Query: 65  AQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKHP 114
             GA+  +   A +++          I    P ++V   ++        + A  +  +H 
Sbjct: 58  ELGADVKIGHRAENVEGMDVIVVSSAINEQNPEIIVAREQRIPIIRRAEMLAELMRFRHG 117

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S +  I   +        PT  I                    +
Sbjct: 118 ---IAIAGTHGKTTTTSLISTIFAEAEYD-----PTFVIGGLLNSAGTNARLGKSRY-LI 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D +    +        F
Sbjct: 169 AEADESDASFL---------------HLQPMVSVVTNIEADHMDTYGGDFSKVKDTFVDF 213

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVT- 292
              LP    AI+  DDA  +E+  R   +   +++ G++       + +     K   T 
Sbjct: 214 LSNLPFYGQAIVCGDDANIQEIRPRIGRS---IITYGFESHNDYRAENISLSFGKANFTV 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           I  +         L G   V NAL A  +    G++   ++  L     +  RFE +G  
Sbjct: 271 IRPDHDPLKITLNLTGNHNVLNALAAIAVATDEGVNDEAIIRALAGFGGIGRRFEQLGTF 330

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T+     +  DY H    +   +   R      R+++V+                  L 
Sbjct: 331 NTSKGEVCLVDDYGHHPTEVRATIAAARANWPDKRLVMVYQPHRFTRTRDLYEDFVEVLS 390

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIE-MLNKQD 460
             D  ++ D    SE P      + +   I   G    +  G+  +A+   +  ++   D
Sbjct: 391 SVDALLLLDVYAASEQPIEGADSKSLCRSIRQRGQIEPVYVGD-KDALPGILANIMQDGD 449

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 450 IVMTQGAGN 458


>gi|294828013|ref|NP_712232.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|293385859|gb|AAN49250.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 488

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 135/396 (34%), Gaps = 66/396 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  +++ G+ GK++  +    + ++ G+S   +     ++       +       + ++ 
Sbjct: 107 KKQISIAGSHGKTTTTAMTAFLLEKCGMSP-SVMVGGEVAFLGGKGGVWGKGEWGVFESD 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               +    +  +                      TN+  DH+DY+QT++   NA +R  
Sbjct: 166 ESDGTFNNHYAEMR-------------------ILTNVDEDHLDYYQTRENLLNAFVRYM 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--------------- 279
           E         I+  DD   ++ +K  H+    +    Y+                     
Sbjct: 207 EG---ASRRLILNLDDIGIRDSIKLIHDHSKILGFSKYKNPDEFTSGLSRNSEKSKDDLK 263

Query: 280 --------------------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                               K V        +    + K++ F    PGE  + NAL A 
Sbjct: 264 NSDIAGAEKTSKVLYGIDPDKIVYYTIQSGILYFYFQKKEYSFSLKYPGEHYLKNALAAI 323

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             C   GI  + ++  + +   V  R E++G+   G  +Y DY H    ++ +++++  +
Sbjct: 324 LACFETGIPLSDLVSKISEYSGVNRRLEYLGSK-NGIEVYDDYGHHPTEIKAVIQSMEEL 382

Query: 380 TS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEII 433
              GR +++F                 +LD  +I  +       EDP      ++ ++ +
Sbjct: 383 KKEGRAVILFQPHRYTRTQNLYKEFAESLDSGEIVFLLPIYSAGEDPIYGVKAELISDFM 442

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              P  I      E I T    L   D LV  G G+
Sbjct: 443 K-FPAKILPKEISEGIFTLKSFLKPGDKLVTLGAGN 477


>gi|45657726|ref|YP_001812.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600966|gb|AAS70449.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 490

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 135/396 (34%), Gaps = 66/396 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  +++ G+ GK++  +    + ++ G+S   +     ++       +       + ++ 
Sbjct: 109 KKQISIAGSHGKTTTTAMTAFLLEKCGMSP-SVMVGGEVAFLGGKGGVWGKGEWGVFESD 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               +    +  +                      TN+  DH+DY+QT++   NA +R  
Sbjct: 168 ESDGTFNNHYAEMR-------------------ILTNVDEDHLDYYQTRENLLNAFVRYM 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--------------- 279
           E         I+  DD   ++ +K  H+    +    Y+                     
Sbjct: 209 EG---ASRRLILNLDDIGIRDSIKLIHDHSKILGFSKYKNPDEFTSGLSRNSEKSKDDLK 265

Query: 280 --------------------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                               K V        +    + K++ F    PGE  + NAL A 
Sbjct: 266 NSDIAGAEKTSKVLYGIDPDKIVYYTIQSGILYFYFQKKEYSFSLKYPGEHYLKNALAAI 325

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             C   GI  + ++  + +   V  R E++G+   G  +Y DY H    ++ +++++  +
Sbjct: 326 LACFETGIPLSDLVSKISEYSGVNRRLEYLGSK-NGIEVYDDYGHHPTEIKAVIQSMEEL 384

Query: 380 TS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEII 433
              GR +++F                 +LD  +I  +       EDP      ++ ++ +
Sbjct: 385 KKEGRAVILFQPHRYTRTQNLYKEFAESLDSGEIVFLLPIYSAGEDPIYGVKAELISDFM 444

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              P  I      E I T    L   D LV  G G+
Sbjct: 445 K-FPAKILPKEISEGIFTLKSFLKPGDKLVTLGAGN 479


>gi|310287102|ref|YP_003938360.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium bifidum S17]
 gi|309251038|gb|ADO52786.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium bifidum S17]
          Length = 529

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 128/450 (28%), Gaps = 66/450 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I +V  +     + A  + G+     + V G  G
Sbjct: 87  RGADTVVYSSAIKPDNPEIVAAHERGIRIVHRS----DILALLMNGR---RAVTVAGAHG 139

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  I   +G         +   +     R             + L        
Sbjct: 140 KTTTSSLLSHILVHAGTGKLADPSYAIGGTIQAPGR-------------AVLDGGHAGRG 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            V  +            +      TN   DH+D++  +  Y  A     +         +
Sbjct: 187 DVLVAEADESDGSFCKYRPSIAVITNALADHLDHYGDEAHYCAA---FVDHAGHASGHVV 243

Query: 246 IYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFI------------HLKKVCAIHNKQQVT 292
           +  DD  +  V++    +  R  +    +                  +   A   ++  T
Sbjct: 244 MTGDDEGAVAVLRDLDPSVARRTIVYATKDADQIGDLRGATLVRIDAEHESADSGRETFT 303

Query: 293 ISVE------------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           + V                      +PG     NA  A    + +G+      +      
Sbjct: 304 VHVPASLASVCGCGDADLALPVSLAVPGMHNARNATAAILAAMLLGVTPEAAAQAASTFL 363

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKR 399
               RF+  G    G  +  DYAH    +  +L   R      +I V+F           
Sbjct: 364 GASRRFQVRGEE-NGVTVVDDYAHHPTEISALLDAARRRYPRSVIRVLFQPHLFSRTRTF 422

Query: 400 PIMGKIALDLADIAIVTDDNPRSE---DPEKIRA----EIIHGIPGFIEKG--------- 443
                 AL  AD  IVT   P  E   D   + A    +    +P    +G         
Sbjct: 423 AHEFAEALSKADDVIVTGIFPARELQRDFPDVSAMTIVDAAQDVPHASAQGDGTWISAVD 482

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +   A +         DV+   G G  TV 
Sbjct: 483 DMQVAAQMLAMRCRPTDVVFTVGAGDITVM 512


>gi|217979587|ref|YP_002363734.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Methylocella
           silvestris BL2]
 gi|217504963|gb|ACK52372.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylocella
           silvestris BL2]
          Length = 461

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 153/435 (35%), Gaps = 47/435 (10%)

Query: 66  QGAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +G  A+V+S    L      ++        + V+ +   F      R        ++A+T
Sbjct: 64  RGFSALVLSPGVPLTHPAPHWTVVKAREAGVEVIGDIELFCRE---RRRIAPDAPLIAIT 120

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  + +  +    G      G   T                     L+      
Sbjct: 121 GTNGKSTTTALIAHLFATLGFDVQIGGNIGT-------------------PILALEPPSS 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                VE SS+ +D      +    G   N+  DH+D H T + Y   K RL        
Sbjct: 162 ERVHVVECSSYQIDLA--PSLDPTVGVLLNVTPDHLDRHGTMENYAAIKARLVSA----A 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGK 298
             A+I  DDA+   + K+    G  V+ V   G       + +  A++ +    + +   
Sbjct: 216 DHAVIGVDDAFCAAIAKKLRAEGHDVIGVSAAGMLEGDGVVFEGGALYWRGGRRLDLI-A 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D   +  L G     NA  +  +  AIG+D A + + L     +  R E VG   +   +
Sbjct: 275 DLSGVGSLRGAHNGQNAAASVAVLHAIGLDGAGLAKGLRSFAGLAHRMEEVGKYGKALLV 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               A  +++ E  L +   I     I+         +  +P+ GKIA       ++ + 
Sbjct: 335 NDSKATNADAAEKALLSFDNI---FWILGGRAKQGGIESLKPLFGKIAKGY----LIGE- 386

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
              S D  K   +          +     A R AIE    + V++++     +     + 
Sbjct: 387 --ASHDFAKTIGDAFPVAFCQTLENALPLAARDAIESARAEPVVLLS-PACASFDQFPDF 443

Query: 479 EKKMSVDCDIIREIL 493
           EK+    C+I R ++
Sbjct: 444 EKRGDRFCEIARALI 458


>gi|315633818|ref|ZP_07889107.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
 gi|315477068|gb|EFU67811.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
          Length = 476

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 149/439 (33%), Gaps = 56/439 (12%)

Query: 48  AIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLS 103
           A  G K     FI        GA  +V+SSA      +  A   +  P++      +   
Sbjct: 60  AYAGAKV----FIGHKAENITGASVVVISSAIRDDNPEVVAAKEARIPVI------QRAQ 109

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           + A  +  +H    +AV GT GK++  + V  I   +GL    +      S+    +   
Sbjct: 110 MLAELMRFRHG---IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKSAGTNAHLGR 166

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           +         ++       + +                ++ +    TN+  DH+D +   
Sbjct: 167 S------RYLIAEADESDASFL---------------HLQPMISIVTNIEPDHMDTYHGD 205

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKV 282
                     F   LP    A++ ADDA   ++M      G +V++ G+ +     ++  
Sbjct: 206 FDEMKQTYVNFLHNLPFYGLAVLCADDA---DLMSLVPQVGRQVITYGFSENADYRIEDY 262

Query: 283 CAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   T+    G+  D L  +PG     NA  A  +    GI +  +L  L     
Sbjct: 263 QQTGFQGHYTVICPSGERIDVLLNVPGRHNALNATAALAVAKEEGIKNEAILAALADFQG 322

Query: 342 VPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQG 397
              RF+ +G     +    +  DY H    + + ++  R     + IV +F         
Sbjct: 323 AGRRFDQLGQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTR 382

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIR 450
                    L   D  I+ D  P  E P      + +   I + G    +   +  + + 
Sbjct: 383 DLFDDFVQVLSQVDALIMLDVYPAGEAPIVGADSKALCRSIRNLGKVDPVLVSDTAQ-LG 441

Query: 451 TAIEML-NKQDVLVVAGKG 468
             ++ L    D+++  G G
Sbjct: 442 EVLDHLIQDGDLILAQGAG 460


>gi|300774444|ref|ZP_07084307.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
 gi|300506259|gb|EFK37394.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
          Length = 445

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 133/355 (37%), Gaps = 45/355 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GK++  S +  I +  GL+   +G    I                     
Sbjct: 101 AKIIAITGSNGKTTTTSLIYYILKNDGLN---VGLGGNIG----------------YSFA 141

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRL 233
             ++ +   +  +E SS  LD   +   +       NL +DH+D Y+   + Y  AK R+
Sbjct: 142 KQVADENHEYYVLEVSSFQLDD--IQNFRPYISLLLNLSQDHLDQYNYNYEEYALAKFRI 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQ 289
             E    ++  I   DD  SK ++++      +++    + K        +    +  K 
Sbjct: 200 -AENQENDNFFIYNKDDEMSKNLLEKLE-IKAKMIPFSTKEKLQEGGFVNEDEIVVKMKD 257

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + ++ V+         L G   V N+L A+     + I++  +   L     V  R EFV
Sbjct: 258 EFSMKVD------ELSLLGNHNVANSLAASIAGKILEINNESIRHSLMTFQAVEHRLEFV 311

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T   G +   D   T+  +      + ++ +  + +V   G D+      I   +   +
Sbjct: 312 -TEIDGVKYINDSKATN--VNATYYALESMKTPTVWIV--GGLDKGNDYTEIEDLVKRKV 366

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I  +  DN      +KI            +  +  EA+R +  +  K D +++
Sbjct: 367 KAIVCLGIDN------KKIIDFFKDKKEFIYDTSSMEEAVRISKSLAKKGDTVLL 415


>gi|223986480|ref|ZP_03636481.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
 gi|223961542|gb|EEF66053.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
          Length = 535

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 131/379 (34%), Gaps = 36/379 (9%)

Query: 98  TRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
            +K     A  +   H   I + +TG+ GK+S  + +QQI                  S 
Sbjct: 171 IKKHYMKLAKEILKSHDRLIKIGITGSYGKTSSKNILQQILSE------------KFYSL 218

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                  TP  I +        +  V    + A   G  +  +D ++   G  T++G  H
Sbjct: 219 PTPASFNTPMGITITIREQLKPTHEVFICEMGADHVGDIEQLMDFVQPQIGLVTSIGPQH 278

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ++   +Q+     KM++ E+L P     ++  D+     +        C +   G + + 
Sbjct: 279 LNTFGSQENIVTEKMKMIEKL-PVTGFGVLNKDNEL---IRNYYIKNKCPIAWYGIEQED 334

Query: 277 IHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           +  + V      Q  +  +   EG D  F   L GE  + N L A  +   +G+    + 
Sbjct: 335 VDYRAVNISFGPQGSSFDIHTREGADIPFKTRLLGEHNIANILAAVAVGRHLGVSWEQLQ 394

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVVFGCG 391
             + ++  V  R E    N   G  ++D A  SN +   M L+ ++T+  G   +V    
Sbjct: 395 SAVAQVRYVEHRLEVKKIN---GYTFIDDAFNSNPVGSAMSLQVLKTM-PGTRFIVTPGM 450

Query: 392 GDRDQGKRPI---MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNR 445
            D    +  I    G    D AD  I+          E I   +      +         
Sbjct: 451 IDLGPRQHEINKQFGMKMKDCADEVILVGK----RQTEPIVEGLQACGFDMAHVHIVATV 506

Query: 446 IEAIRTAIEMLNKQDVLVV 464
            EA     +     D +++
Sbjct: 507 KEAFGLVYQKAAYTDTILL 525


>gi|134095973|ref|YP_001101048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Herminiimonas
           arsenicoxydans]
 gi|133739876|emb|CAL62927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 102/463 (22%), Positives = 170/463 (36%), Gaps = 64/463 (13%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DG  F+  A++ G    ++          A      P+   +      +L A +    + 
Sbjct: 66  DGIDFV--AVSPG----LMPERELAALIPAAEEKEIPLWG-EIELFAQALAALKEERNYT 118

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TGT+GK++V S V  +CQR+GL+    G                 SP  L +  
Sbjct: 119 PKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI---------------SPAALDRLD 163

Query: 175 -SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S        +E SS  L  H    ++    +  NL +DH+D+H    AY + K R+
Sbjct: 164 QAVASDALPQVWVLELSSFQL--HFTYSLQADVATVLNLTQDHLDWHGDMAAYADDKARI 221

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--- 290
           F       +  ++  DDA    VM+ A  +   V++ G            A  N  +   
Sbjct: 222 F----GSNTIRVLNRDDA---RVMQMALPSAA-VITFGADEAGQANCFGLADENGMRWLS 273

Query: 291 -----------------VTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSAL 331
                            V +++  K    +  L         NAL A  LC AIG+  A 
Sbjct: 274 VAVAEEELPQKRRKKDNVELAISTKKLMPVDALKIRGQHNAINALSALALCRAIGLSFAQ 333

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFG 389
           +L  L + H  P R E V T + G   Y D   T+   ++  +     +   G   +V  
Sbjct: 334 LLHGLREYHGEPHRVEHVMTIA-GVEYYDDSKGTNVGATVAALNGLGVSQDGGAKHLVLI 392

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            GGD        +       A   ++       +D   IRA I       I+     EA 
Sbjct: 393 AGGDGKGQDFSPLADPVAKYARAVVLI-----GKDAASIRAAIAATGVELIDCTTLEEAT 447

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + A E+    D ++++     ++ +  N   +  V  D +REI
Sbjct: 448 QKAAELAQAGDAVLLS-PACASLDMFRNYAHRAQVFVDTVREI 489


>gi|330718670|ref|ZP_08313270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           fallax KCTC 3537]
          Length = 414

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 123/350 (35%), Gaps = 42/350 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTG++GK++  S ++ + Q  G S    G   T                 L K  +
Sbjct: 76  RLIGVTGSNGKTTTVSLIRDMLQADGQSVVTAGNIGT---------PVCEVAGQLRKDDT 126

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L         +E SS  L       I+    + TN+   H++YH +++ Y  AK ++ +
Sbjct: 127 LL---------LELSSFQLL--GTPDIQPDIAAVTNIFASHLNYHGSRENYVKAKFQITK 175

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L  +    + AD A S+   +    A         Q  +        +    Q+ + +
Sbjct: 176 HQLATQHLV-LNADIADSQRFAQDTQAAVTMFSR--QQSGYYAGADQDNLLVDNQIVMPL 232

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +         L G   + N L A  +    G+    + + L +   V  R EFV  +  G
Sbjct: 233 DN------IKLVGPHNLENILAAVSVAKLAGVKIESMRQVLSQFGGVKYRLEFVF-SHNG 285

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            + Y D   T   +E   + + +     +      G DR      +   +    + IA  
Sbjct: 286 IKFYDDSKAT--DIEATQQALNSFDVPTVW--LAGGLDRGDDLTRMKDNLKHVKSVIAF- 340

Query: 416 TDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E  +K+ +   I GI       N + A   AI      DV+++
Sbjct: 341 ------GETADKVVSLAKIAGIQNITVTENVMTAAPIAIAQAKAGDVVLL 384


>gi|227524691|ref|ZP_03954740.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088175|gb|EEI23487.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 443

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 121/377 (32%), Gaps = 60/377 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+G  GK+S    +  +      + + IG  S       + R          +     
Sbjct: 107 IGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGS--GRGVPNARFFVYEADEYRRHFL-- 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    +      TN+  DH DY++      +A  + F   
Sbjct: 163 -----------------------ATEPDYAIMTNIDFDHPDYYKNIDDVQDA-FQTFANQ 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
             K   A  + DD   +++      A   +   G           V          +  +
Sbjct: 199 TKKGIFA--WGDDKRLRKL-----KAKVPIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFK 251

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F  PL GE  ++N+L    +  +  +D   +   L+    V  RF     +  G
Sbjct: 252 GKDLGEFTVPLFGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTFDGVKRRFSERKIS--G 309

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  +   R    S +I VVF                 +L+LAD   
Sbjct: 310 MTIIDDYAHHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAKSLNLADEVF 369

Query: 415 VTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGK 467
           +T     PR E   K+ +E    +   I KG RI     + + ++       DV++  G 
Sbjct: 370 LTQIYSSPR-ESSGKVSSE---DLSRKITKGGRI----LSSDNMSPLLDYDNDVIIFMGA 421

Query: 468 GHETVHIVTNGEKKMSV 484
           G      +   EK    
Sbjct: 422 GD-----IQKYEKTYED 433


>gi|215427537|ref|ZP_03425456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T92]
          Length = 125

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF- 439
             R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G     
Sbjct: 1   DRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVG 60

Query: 440 -----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 61  GDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 111


>gi|149005804|ref|ZP_01829543.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|307126882|ref|YP_003878913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|147762744|gb|EDK69704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|306483944|gb|ADM90813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|332077113|gb|EGI87575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17545]
          Length = 450

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 150/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T     
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTASDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH +   Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKDLTSKTEATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 317 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDIPG- 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYEIATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|160880607|ref|YP_001559575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
 gi|189082875|sp|A9KLU2|MURD_CLOPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160429273|gb|ABX42836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
          Length = 454

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 140/350 (40%), Gaps = 36/350 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I A+TGT+GK+S  + V +I +    S F +G       + Q  + T    + +A    
Sbjct: 110 KIAAITGTNGKTSTTTLVGEIMKTYYKSVFVVGNIGV--PYTQMVKNTENDSVTVA---- 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                       E SS  L+   ++  +    +  N+  DH++ H T +AY  AK+ + +
Sbjct: 164 ------------EMSSFQLE--TIETFRPDVSAILNITPDHLNRHHTMEAYIEAKVNITK 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               KE   I+  +D+Y + V  R         SV    + + L++   I+   +    V
Sbjct: 210 NQT-KEDTCILNYEDSYLRTVSGRIPATILWFSSVRELERGLFLRENHIIYRDDEKECVV 268

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      + G+    N + A G+ IA+ +    + E + K   V  R E+V T  RG
Sbjct: 269 CDVN---ELQIIGKHNYENVMAAVGIAIALKVPMDFIREAVTKFRGVEHRIEYVTTK-RG 324

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            + Y D   T+   +  ++ I+ + +  +++  G G D+D      +      +  + ++
Sbjct: 325 VKYYNDSKGTNP--DASIQAIKAMQTKTLLI--GGGYDKDSDYDDWIKAFDDKVTYLVLL 380

Query: 416 TDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +  EKI       G+   +   +  EA+    E     + +++
Sbjct: 381 ------GQTREKIANAAKRLGVKNIVLVDSLSEAVDFCAEHAGVGETVLL 424


>gi|163868712|ref|YP_001609924.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella tribocorum CIP
           105476]
 gi|189028974|sp|A9IWA4|MURC_BART1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161018371|emb|CAK01929.1| UDP-N-acetylmuramate--alanine ligase [Bartonella tribocorum CIP
           105476]
          Length = 475

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 145/435 (33%), Gaps = 49/435 (11%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G     GH +    +   AE +V S+A    +          + +V        L   R
Sbjct: 51  KGINVHIGH-YAEN-LGN-AEVVVFSTAVKKTNPEYIAAKERHLPLVRRAEMLAELMRFR 107

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AV GT GK++  S V  +   +G     +     I+++  ++R      +
Sbjct: 108 -------RAIAVGGTHGKTTTTSMVAALLD-AGHFDPVVINGGIINAYGTNSRTGEGDWM 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +    S                          +       TN+  +H+D++ +  A   
Sbjct: 160 IVEADESD--------------------GTFLKLPADIAVVTNIDAEHLDHYGSFDAVRT 199

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A  R F E +P    A++  D    + +  R  +          Q     L  +     K
Sbjct: 200 A-FRQFVENVPFYGFAVLCVDHPEVQSLAGRIDDRWVITYGANPQADVRFL-NLSRDGQK 257

Query: 289 QQVTISVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               + V  +         + L P+ G+  V NA  A  +   +GI + L+ + L +   
Sbjct: 258 THFDVLVRSRKTGRKIELKNLLLPMAGQHNVANATAAIAIAHELGISNELIKKGLAEFGG 317

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  RF   G+  RG  I+ DY H    ++ +L+  R    GR+I +              
Sbjct: 318 VKRRFTRTGSW-RGIEIFDDYGHHPVEIKAVLRAARESAKGRVIAIAQPHRYSRLYHLFD 376

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIE 454
                 + AD  ++T      E+P      +++   I + G        +  + +    +
Sbjct: 377 DFAACFNDADTVLITPVYAAGEEPIVGFGSQELVEHIKMAGHRDVRLIHDLEDVVSLVSK 436

Query: 455 MLNKQDVLVVAGKGH 469
               +D +V  G G+
Sbjct: 437 FAQAEDYVVFLGAGN 451


>gi|254282152|ref|ZP_04957120.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           NOR51-B]
 gi|219678355|gb|EED34704.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           NOR51-B]
          Length = 466

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 87/430 (20%), Positives = 142/430 (33%), Gaps = 52/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      IA GA+ +VVSSA +  +        + I +V    + L+      YG    
Sbjct: 55  GHD--GDNIA-GADVLVVSSAIADTNPELQAAKASRIPIVPRA-EMLAELMRYRYG---- 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  I   +G   +F IG                          
Sbjct: 107 --IAVAGTHGKTTTTSLIASILGEAGEDPTFVIGGVLNQGGSNARLG------------- 151

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G   V     S     H L  +       TN+  DH+D++    A +      F
Sbjct: 152 -----DGRFLVVEADESDASFLHLLPMMS----VVTNVEADHMDHYGGDYANYERAFVEF 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293
              LP    A++  DD   + V+        +VLS G        L  +        +T+
Sbjct: 203 LHNLPFYGLAVMCIDDPGVRAVL---PTVTRQVLSYGRDDTADFQLTALEGDGMVTLLTV 259

Query: 294 S--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K  +    +PG     NA  A  +   +GI    +   L +   V  RF  +GT
Sbjct: 260 RRPEPCKTLELTLNMPGVHNALNATAAVAVATELGIADDAIAAGLARFGGVGRRFSRLGT 319

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL 407
                    +  DY H    +   L   R+     R+++++                  L
Sbjct: 320 VRWEHGEALLIDDYGHHPTEVAATLAAARSACPDRRLVMLYQPHRYSRTRDLYEDFVAVL 379

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIR-TAIEMLNKQ 459
              ++ ++ D     E+P        +   I   G    I   +  EA+    I +L   
Sbjct: 380 SDCEVLLLLDVYSAGEEPIAGADSRALTRSIRQRGAVEPIFVAD-AEALAPVLINILRDG 438

Query: 460 DVLVVAGKGH 469
           D+L+  G G+
Sbjct: 439 DLLLTQGAGN 448


>gi|168492843|ref|ZP_02716986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576912|gb|EDT97440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
          Length = 450

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 132/378 (34%), Gaps = 41/378 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G      G    I   A            L   L
Sbjct: 112 APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKDTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     GV                           TNL   HIDYH +   Y  AK  + 
Sbjct: 169 SSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVAAKWNI- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +      ++  +   +K++  +         ++         K   A     Q+   
Sbjct: 211 QNKMTAADFLVLNFNQDLAKDLTSKTEATVVPFSTLE--------KVDGAYLEDGQLYFR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +    G+D+  + E L     V  R +FV  + +
Sbjct: 263 GEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-DIK 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +V+   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       +  E+++         ++E  +  +A R A E+  + DV++++   + +  +
Sbjct: 378 L------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDM 430

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E +  +  D + E+
Sbjct: 431 YANFEVRGDLFIDTVAEL 448


>gi|256545187|ref|ZP_05472553.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399228|gb|EEU12839.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 463

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 137/409 (33%), Gaps = 42/409 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ + A +  +          I VV     FL            +N +AV+G+ GKS+  
Sbjct: 74  VIYTDAIAENNEELVAARKLDIPVVSRG-VFLGGLMKNY-----KNSIAVSGSHGKSTTT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + +I   S  +     PT  +     +                 L ++   +      
Sbjct: 128 SMISKILMNSTKN-----PTILLGGDLDEIEGNVHVGDK-----DILVTEACEYKGNIRY 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +              G   N+  DH+DY++          + +     K+S  I+  ++
Sbjct: 178 YY-----------PSIGIILNIDEDHLDYYKDINDIVET-FKFYLRNQSKDSKTILNLNE 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDF-DFLFPL 306
             +K V+         +++ G               ++    +  + ++  D   F   +
Sbjct: 226 ENNKLVIDAVQG---ELITYGQDNPDADYNATNISFDESGKPRFDLIMKNGDVEHFELAI 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NA  +    +  G+D   + ++++    +  R + +G N     I +DY H  
Sbjct: 283 LGRHNINNACASIIATLESGVDIKTIKKNIQSYTGLERRMQLMG-NVNDCNIILDYGHHP 341

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--D 424
           + +++ L  +   T GR+I V+         +         D AD  I+TD     E  D
Sbjct: 342 SEIQVNLNALAEHTKGRLICVWQPHTYTRTKRLFNEFVKCFDEADEVIITDIFAAREPFD 401

Query: 425 P----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P    + +   +I             +     +  + K D ++V G G 
Sbjct: 402 PSISSKDVVDALIKTGKSAKYIPTFEKVKEYLLSDIKKDDQVIVTGSGD 450


>gi|297616979|ref|YP_003702138.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144816|gb|ADI01573.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 456

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 146/400 (36%), Gaps = 53/400 (13%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKS 127
            VVS       +     I + TP++                + K+    I+A+TGT+GK+
Sbjct: 72  AVVSPGVSMDAEVVRRVIEAGTPVI---------GEIELAYHLKNDAVEIVAITGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +FV +I  +SG+++   G                         +S +       VSV
Sbjct: 123 TTTAFVAEILDKSGVNTAACGNIGV-------------------PLISVIDEIEHGVVSV 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R         +  N+  DH+D H T + Y  AK ++     P +  +++ 
Sbjct: 164 EVSSFQLETIR--EFHPRVAAVLNITPDHLDRHGTMEQYVEAKAKILSNQGPDD-FSVLN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            +DA+ + +   A +      +     +G ++   K+ A     +V I            
Sbjct: 221 YEDAWVRRLKTEAKSQVIFFSTARRLPRGVYVEDGKIKARLYDDEVVICPREN-----VA 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GE  + N L A G+ IA+G+    + + L     V  R E V   +    +       
Sbjct: 276 LRGEHNLENVLCAVGIAIALGVKPDTIADTLRSFKGVRHRLEEVRRVNGVLYVNDSKGTN 335

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S    L+  +       +++   G ++      +   I   +  + +V       E  
Sbjct: 336 PESTIKALQAFQE-----PVILIAGGRNKGADFTVLSRVIKDKVRHLVLV------GEAS 384

Query: 426 EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IR +++  G        +  EA+  A E+    DV+++
Sbjct: 385 LLIREKVLEQGFQHIDVAKSFEEAVYRAKELARPGDVVLL 424


>gi|262373951|ref|ZP_06067228.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
 gi|262310962|gb|EEY92049.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
          Length = 452

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 141/402 (35%), Gaps = 52/402 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE I++S   + Q        +  I VV +      L            I+A+TG++ KS
Sbjct: 66  AEEIILSPGLAPQLPEIQQAIDKGIPVVGDI----QLLRRATD----APIIAITGSNAKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V  + Q +G      G                     L +    L       + +
Sbjct: 118 TVTTLVGLMAQDAGKKVAVGG--------------------NLGRPALDLLKDKPELIVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +        N+  DH+D H     Y  AK R+F+ +       +  
Sbjct: 158 ELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGDMLGYHKAKHRIFQGV----KKVVYN 211

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPL 306
            DD  S+ ++  A        S G     ++   V    +          +        +
Sbjct: 212 RDDNLSRPLVPDATPMQ----SFGLNAPDLNQYGVLRDADGTMWLARGRERILKTSEMYI 267

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V NAL    +  A+G     +LE L+    +  R E+V T   G R Y D   T+
Sbjct: 268 QGMHNVANALACLAIGEAVGFPLPSMLETLKTFKGLEHRCEYVQT-IDGVRYYNDSKGTN 326

Query: 367 --NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
              +L  I  L     +  G++ ++   G  + Q  RP+   I   +  + ++ +D P  
Sbjct: 327 VGATLAAIDGLGAAIEVNKGKLALIL-GGQGKGQDFRPLRNAIQKYVKSVILIGEDAP-- 383

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  + I G        +   A+  A ++   +DV+++
Sbjct: 384 -----VIEQAIQGTTVIQHASSLKAAVELAQQVTQAEDVVLL 420


>gi|104774360|ref|YP_619340.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514455|ref|YP_813361.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274813|sp|Q049E9|MURC_LACDB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123251855|sp|Q1G9A0|MURC_LACDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|103423441|emb|CAI98322.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093770|gb|ABJ58923.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126159|gb|ADY85489.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 439

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 116/358 (32%), Gaps = 47/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G+ GK+S    +  +   +  +SF IG    +    +D+R                
Sbjct: 109 IGVAGSHGKTSTTGLLATVLGEAAPTSFLIGD--GMGKGVKDSRFFVYEAD--------- 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + +  Y +A     ++ 
Sbjct: 158 ----------EYRRHFLAYH------PDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD      +++ H    +  + G           V       +  +   
Sbjct: 201 --TKKGLFVWGDDER----LQKIHPKTAKKYTYGLKDSDDFQAFDVVKTTEGAKFHVRAN 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+D  +F   L G+  V NA     +    GID  +V + L K      RF     +   
Sbjct: 255 GEDLGEFTIHLFGDHNVMNATAVIAIAFTEGIDLDVVRKGLVKYTGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    L   ++  R      +++ +F         +        L   D A 
Sbjct: 313 TVVIDDYAHHPTELRATIQAARQKFPDRKLVTIFQPHTYSRTKEFEEEYVEILKGVDKAF 372

Query: 415 VTDDN-PRSEDPEKIR-AEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T       E    I+  +I   IPG      + ++ +     +  K D +V  G G 
Sbjct: 373 LTPIYGSAREAAGDIKSEDIASQIPGAEVIDFDNLKDL-----LAYKGDCIVFMGAGD 425


>gi|83309265|ref|YP_419529.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
 gi|82944106|dbj|BAE48970.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
          Length = 465

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 122/401 (30%), Gaps = 43/401 (10%)

Query: 83  SATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           SA +    P +V     K        L A        E  + + GTSGKS+    +  I 
Sbjct: 75  SAAVEDTVPDVVAARALKAPMLTRPQLLARLFNA--SELPIGIAGTSGKSTTTGMLGWIL 132

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +R G          T+ + A       P   +     S L   G   V+    S G   +
Sbjct: 133 ERCGRRP-------TVMNGAVMKNFVRPDSPF----SSALVGDGPAFVAEVDESDGSIAN 181

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                        N+  DH    ++         RLF +   K   A++  D+  +  + 
Sbjct: 182 Y----APRIALVNNIALDH----KSMDELR----RLFADFTAKARVAVLNLDNGETAALA 229

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNAL 316
                      S+   G  +  + V    +    T    +GK       +PG   V NAL
Sbjct: 230 ATLPADRVVTYSLEDPGADLWAENVSPAPDGIAFTARTRDGKTMPVKLLVPGRHNVSNAL 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    +A G+        L +   V  R E VGT   G  +  D+AH  + +   L  +
Sbjct: 290 AALAGALAAGLGLEDAATALGEFSGVRRRLETVGTKG-GVTVIDDFAHNPDKISATLATL 348

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIA----------LDLADIAIVTDDNPRSEDPE 426
                GR++V+F   G                        L + D         RS    
Sbjct: 349 HDW-PGRLLVMFQPHGFGPLRLMKDEFVACFAERLGPDDVLVMPDPVYFGGTVDRSVTSA 407

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            +   I       +    R       +EM    D +VV G 
Sbjct: 408 HLAEAITARGRRALAVPERAACGDALVEMARPGDRIVVMGA 448


>gi|291615176|ref|YP_003525333.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585288|gb|ADE12946.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 464

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 85/401 (21%), Positives = 142/401 (35%), Gaps = 42/401 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG + IV+S    + +          I V  +        A+  Y ++   ++A+TG +G
Sbjct: 67  QGIDRIVISPGVPVAEPLVQRAIARGIAVEGDIELLAQQLATNDYRRNT-KVIAITGANG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V S V  +C  +GL     G                 SP  L    +      V   
Sbjct: 126 KTTVTSMVGAMCAAAGLDVQVAGNI---------------SPAVLDALRARDHQPQV--W 168

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +   A    N+  DH+D + +  +Y  AK R+F          +
Sbjct: 169 VLELSSFQLE--TTYTLDADAAVVLNVTEDHLDRYDSMDSYAAAKARIFIG----NGVQV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD  S  +           L+     +   + +  A     Q    +   D      
Sbjct: 223 VNRDDVRSAAMRLEGRKQTSFGLTPPASDEDWGITREGAATWLMQGAQKILRAD---ELQ 279

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G   V NAL A  LC A+G+    + E L     +P R E V     GG  Y D +  
Sbjct: 280 VTGMHNVANALAALALCRALGLPIVPLCEALRAFRGLPHRVEKVAE--VGGITYYDDSKG 337

Query: 366 SN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           +N  + E  LK +     G+  VV   G  + Q   P+   +A     + ++  D P   
Sbjct: 338 TNVGATEAALKGL-----GKPAVVILGGDGKGQDFSPLKAAVAQHARAVVLIGRDAP--- 389

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +       +E  +  EA+  A       D +++
Sbjct: 390 ---LIERALQGCGKPVLEAHDMDEAVSMAAANAQTGDAVLM 427


>gi|317130029|ref|YP_004096311.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474977|gb|ADU31580.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 526

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 123/355 (34%), Gaps = 24/355 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK+SV  F+  +         +     T  SF             + + L 
Sbjct: 180 KVIGITGSFGKTSVKHFMHAVLS------AKFNVLMTPESFNTKL----GVTRTIREKLK 229

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V    + A   G  +   + +    G  T +G  H++  ++       K  + E
Sbjct: 230 --PYHEVFIAEMGAKQGGDVEEICELVDQQYGVLTAIGEQHLETFKSLDNIKKTKYEIIE 287

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTI 293
            L P     ++  DD     +M  A      V+  G       I  K +         T+
Sbjct: 288 TL-PDNGVGVLNKDDEN---IMSYAPYQKRDVIYYGIDAPDVDIRAKDISYSSKGMDFTV 343

Query: 294 SV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +  G+   F   L G+  VYN L A  + + +G+  + +++ +  L  VP R E   + 
Sbjct: 344 VLKNGETQTFRTKLLGKHNVYNILAAIAIGLQLGMKLSEMVKPIRSLDAVPHRLELKRST 403

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDL 409
                I  D  +++     +  ++     G  ++V        +++          A + 
Sbjct: 404 GN-ITIIDDSFNSNPVGSKMAVDVLGSMEGYRMLVTPGMIELGEKEYELNKEWATYAANK 462

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D  I+      ++  +    E  +         N  +AI+   ++  ++ ++++
Sbjct: 463 CDYIILVGKKQ-TKPLQDGLKEANYPEAQLYIAENLQDAIQQMHKVAKEKTIVLL 516


>gi|326202902|ref|ZP_08192769.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986979|gb|EGD47808.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 893

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 140/389 (35%), Gaps = 37/389 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++      G   + +G TST   +  D  +          A   L+++ V    +E + 
Sbjct: 497 LIRHTLSLMG---YNVGMTSTSGIYVGDECVQKGDNTGPVSAEVILTNKEVDIAVLETAR 553

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+  D   T +     K  L  E +  +  A++ AD
Sbjct: 554 GGIVRRGLGYDLADVGVLINISDDHLGIDGINTIEDLAKTKA-LVVEAVKHDGYAVLNAD 612

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-----KKVCAIHNKQQVTISVEGK------ 298
           D  +  +++R  +    + S G             K +     +  V I    K      
Sbjct: 613 DGMTPYILERTRS-NVIMFSRGISNPVFKRHCKNPKNIAVFVRESFVWIQRNNKKIPLIS 671

Query: 299 --DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTN 352
             D    F    +  + N+L A    I + I    +++ +          PGRF      
Sbjct: 672 LDDIPITFGGIVDCNIENSLAAISALIGLNIPLDAIVKGMNTFQPDMELNPGRFNIFDMG 731

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +   ++ +DY+H       ++K ++ I + R++ + G  GDR       +G++  +    
Sbjct: 732 T--FKVMIDYSHNIAGYSAVVKFMQRIKAKRLVGIIGMPGDRQDSNLKEVGELCANSFHK 789

Query: 413 AIVTDD-NPRSE---DPEKIRAE--IIHGIPGF-IEKGNRI-EAIRTAIEMLNKQDVLVV 464
             + +D + R     +   I  +  I  G     +E   R  EA+  A+      D++ +
Sbjct: 790 IYIKEDIDLRGRRRGEVADIFEQSIISAGAKKENVEIIYRETEALEKAMLDAQPGDLIAL 849

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +  E    V N  KK   + +   E+L
Sbjct: 850 FYEEFEPAIHVINRFKK---EQEHANELL 875


>gi|78485922|ref|YP_391847.1| UDP-N-acetylmuramate [Thiomicrospira crunogena XCL-2]
 gi|78364208|gb|ABB42173.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 458

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 139/417 (33%), Gaps = 51/417 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A+++G  A+           +  + ++ P  + +N  K                ++A
Sbjct: 66  IGNALSRGHAAV------EATLNAQQLYTSGPQWLAENILK-------------DRWVVA 106

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++ AS V  I + +GL    +     +      +     SP ++ +A  Y ++
Sbjct: 107 VAGTHGKTTTASMVAWILEHAGLQPGFL--IGGVPENFGVSARLGASPFFVVEADEYDTA 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                                          NL  DH D      A       L    +P
Sbjct: 165 FFDKRSKFVHYH------------PRTCVLNNLEFDHADIFDDLAAIQKQFHHLV-RTVP 211

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
                I  +D+    EV+++       + + G Q             +     +  +G+ 
Sbjct: 212 GNGLIIQPSDETNIDEVIQQ--GCWTPLETQGSQSTQADWAYQLLSDDGTAYEVYYKGQL 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +  + + G   V N + A       G+     ++ L     V  R   +GT   G  +
Sbjct: 270 RGEVHWQMTGLHNVRNGVSAIAAAQHCGVPVEEAIQGLCAFEGVRRRMTQIGT-VNGIVV 328

Query: 359 YVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADI 412
           Y D+AH   ++EM L  +++      TSGR+I VF         G        A D AD 
Sbjct: 329 YDDFAHHPTAIEMTLSGMKSQLKARPTSGRLIAVFEPRSNTMRMGVHQNSLPAAFDQADA 388

Query: 413 AI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                D +     P+ +    +     + +  +R       ++ L  +D +V+   G
Sbjct: 389 VYAFIDPDWNWSMPKDLFKVPVKVADTYNDLLDR------LVDELLPEDTVVIMSNG 439


>gi|89067941|ref|ZP_01155385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046539|gb|EAR52595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
          Length = 464

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 126/409 (30%), Gaps = 49/409 (11%)

Query: 68  AEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121
             A++VS      Y              + V ++   F        +  H     ++AVT
Sbjct: 67  VAALIVSPGIPHLYPRPHPVIAAAWEAGVPVDNDIGLFFRSLGQSDWDSHDVAPKVVAVT 126

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GKS+ A+ +  + +  G  S   G                         L       
Sbjct: 127 GSNGKSTTAALIHHVLREGGRESQLAGNIG-------------------RGVLDIDPPGD 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V +E SS+  +  R   +      FTNL  DH+D H     YF AK RLF E  P  
Sbjct: 168 GGVVVLELSSYQTELAR--SLTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDR 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298
               +  D+   + +  +   +      +         +       K  ++   +G+   
Sbjct: 226 CIVGV--DELEGRFLANQLAESRADDRVIRISADRKLAEGWSVTARKGYLSELRKGRQVG 283

Query: 299 --DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D   +  LPG     NA  A  +   +G+    +         +P R + +       
Sbjct: 284 SIDLREIKGLPGAHNHQNACAAYAVARTLGLGPRQIEAAFASYPGLPHRSQLIAERGGVR 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   +S    L     I     I     G  ++ G   ++      +    I  
Sbjct: 344 FVNDSKATNVDSAAKALAAFGRIR---WIC---GGLQKEGGLGGLLDAAGGVVKAYVIGR 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +    +     I AE+   +          +A+  +       DV+++A
Sbjct: 398 EAEAFAMSLTGIDAEVCTTM---------ADAVARSAAEAEPGDVVLLA 437


>gi|300869091|ref|ZP_07113691.1| UDP-N-acetylmuramate--L-alanine ligase [Oscillatoria sp. PCC 6506]
 gi|300332907|emb|CBN58887.1| UDP-N-acetylmuramate--L-alanine ligase [Oscillatoria sp. PCC 6506]
          Length = 539

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 80/464 (17%), Positives = 146/464 (31%), Gaps = 87/464 (18%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEA--------IVVSSAY--SLQDFSATIRSNTPILVVD 96
           +A  G+  +G         +GA A        ++ S+A   +  ++   +    PI    
Sbjct: 100 IAASGDNRNG---------KGAIALSHLDLPQVICSTAIHPANSEYRRALDLGCPIFHRS 150

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +    L L             +AV GT GK++ +S +  +  ++GL      PT  +   
Sbjct: 151 DVLAALIL---------DYQSIAVAGTHGKTTTSSMIGFMLLKAGLD-----PTIVVGG- 195

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             +      +                 H     +        L  +    G  TN+  DH
Sbjct: 196 --EVNAWEGNARL-------------GHGPYLVAEADESDGSLVKLSAKIGVVTNIELDH 240

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D++ T      A   +F +        +   D    K  +K         +S   +   
Sbjct: 241 PDHYDTLDQVI-ATFNVFAQ---NCQILVGCIDCDTVKNSLK-------PSVSYSLEADR 289

Query: 277 IHLKKVCAIHNKQQVTISVEGKDF----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                V ++  +   TI+   +      +    L G+  + NAL A  +   +G++ A++
Sbjct: 290 GADYTVDSVEYRADCTIARVWERGTALGEMQLKLLGQHNLSNALAAVAVGRLLGLEFAVI 349

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--------------- 377
            + +        RFE  G    G     DYAH  + +   L + R               
Sbjct: 350 AKAIADFEGARRRFEVRG-EHNGILFVDDYAHHPSEIRATLTSARLRIENSKPKPKSKIK 408

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAE 431
              S R++ VF                 +   ADI IV+D     E        EK+   
Sbjct: 409 NSKSRRVVAVFQPHRYSRTLTFLTEFAQSFSDADIVIVSDIYSAGEPNTGQISGEKLADL 468

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           I         + +     +   E+L   D+ +  G G+    I+
Sbjct: 469 IAEHHQQVYYQPSLQSIAKFLTEILRPGDLALFLGAGN-LNQII 511


>gi|183221142|ref|YP_001839138.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911233|ref|YP_001962788.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775909|gb|ABZ94210.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779564|gb|ABZ97862.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase); putative
           signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 469

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 144/428 (33%), Gaps = 54/428 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V SSA + +      R     + + +  +F+ L  S       +  ++V G+ GK
Sbjct: 61  GIQMVVYSSAINDKHKDVFNRIQNLNIPLKHRSEFMHLLVSN------QKSISVAGSHGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  + V QI    GL                   +       L K    +         
Sbjct: 115 TSTTTMVSQILTEVGLD---------------PTIMIGGDTSLLQKRGGKMGKGDYAVYE 159

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + S     +H     K      TN+  DH+DY++T++    A +       P     ++
Sbjct: 160 SDESDGTFLRH-----KANIRLLTNIDNDHLDYYRTRERLEEAFLDYMGFGSP--GEVVL 212

Query: 247 YADDAYSKEVMK------------------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +  D   K V++                     +      S         +  V     +
Sbjct: 213 FVGDPGIKSVLEIHYRNLTFHNELHLNLLVTKSHTNEEWFSYFLSQFQKQITVVLYEVKE 272

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+   +E + +    P PG   + N LVA      IGI  +   + L +   V  R E 
Sbjct: 273 NQLYFQLENQSYTLELPYPGVHYLTNGLVALTCAYRIGISPSQSSQILSRYIGVKRRQEI 332

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +G  +    +  DY H    ++M++++++      G++ V+F                 +
Sbjct: 333 LGVWNE-VTVIDDYGHHPTEIKMVIQSLKDKIKNKGKLHVIFQPHRYTRTKLLLEDLAKS 391

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           L  AD   +       E+P +          + G    +  GN  E +      LNK D+
Sbjct: 392 LLGADFVFLLPIYSAGENPMEGITSNRFLPYLTGSQTTMLDGNIREDLEQIKSHLNKGDL 451

Query: 462 LVVAGKGH 469
           L+  G G+
Sbjct: 452 LLCLGAGN 459


>gi|83953993|ref|ZP_00962714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
 gi|83841938|gb|EAP81107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
          Length = 461

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 79/409 (19%), Positives = 135/409 (33%), Gaps = 50/409 (12%)

Query: 68  AEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
           A  IV   +   Y   +       +  + V ++   F   FA+  +        I+A+TG
Sbjct: 62  ARLIVSPGIPHLYPAPNPVIVAAQDAGVPVDNDIGLFFQSFATLAWDNFDVVPKIIAITG 121

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ ++ V  I + +G  +   G                         L    +   
Sbjct: 122 SNGKSTTSALVHHILKHAGRPTQLAGNIG-------------------RGVLDIEPAIDG 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 163 EVVVLELSSYQTDLAR--NLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRA 220

Query: 243 PAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VE 296
              +  D+   + +  +     A  RV+ V    K   L                   + 
Sbjct: 221 VIGV--DEPEGRFLAGQLSEGAADDRVIRVSVDRKLTGLGWQVFARKGFLSEYRGGKQIG 278

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D   +  LPG     NA  A   C  +G    ++         +P R + VG      
Sbjct: 279 SIDLRSITGLPGAHNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQTVGEAGGVR 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   +S    L   + I        + CGG   +G    + +    +    ++ 
Sbjct: 339 FVNDSKATNVDSAVKALAAFKNIR-------WICGGLEKEGGLGSLSEPLETVRKAYVIG 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +  +      + AE+   +           A+  AI      DV+++A
Sbjct: 392 REAAQFAMKLGVEAEVCGTMDV---------AVARAINDAEAGDVVLLA 431


>gi|304385172|ref|ZP_07367518.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
 gi|304329366|gb|EFL96586.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
          Length = 464

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 148/398 (37%), Gaps = 44/398 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRK----FLSLFASRLYGKHPENILAVTGTSGK 126
           I+      L   +  I    P+LV    +          A R+       ++ VTG++GK
Sbjct: 71  ILAQHHIELIVKNPGIPYTNPVLVAAKEQNVPIIAEPELAYRVMD---SELIGVTGSNGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V + +Q +  +    +  +     I   A        +   +   LS     G     
Sbjct: 128 TTVTTMIQLMLDQQDHHAAYV--AGNIGVPATTVVQKATANDRVVMELSSFMLAG----- 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                       +D +        N+  +H+D+H+T++ Y N KMR+  E   K+   +I
Sbjct: 181 ------------IDQLHPHIAVVNNIFSNHLDWHKTRENYVNDKMRI-TENQTKDDYFVI 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+   +++ +R      +V+    QG    L +  A     Q+    E         +
Sbjct: 228 NWDNPEWQQLAQRTA---AQVVPFSRQG----LVENGAYAKDGQLYFKNERIMAADEIGV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL A  +    G+ +  + + L+    V  R ++V T + G + Y D   T 
Sbjct: 281 PGDQNVENALAAIAVAKIEGVANKHIKQVLQTFSGVKHRIQYVKTLA-GRQFYNDSKAT- 338

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +E     ++       I++   G DR      ++  +   + ++ +    N ++    
Sbjct: 339 -DIEATQVALKAFQRP--IILIAGGLDRGDDYTRLVADLKPHVKEVIV----NGQTAAHM 391

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  A+   G+    +     +++  A E     DV+++
Sbjct: 392 QEAAQ-AAGVKVVKDSPRVKDSVAIAFEDSQPGDVILL 428


>gi|254880791|ref|ZP_05253501.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_3_47FAA]
 gi|254833584|gb|EET13893.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_3_47FAA]
          Length = 465

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 132/367 (35%), Gaps = 43/367 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +G  + +   +++             
Sbjct: 117 HAGKGLCVAGTHGKTTTSTMTAHLLHQS-----HVGCNAFLGGISKNYGT---------- 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L S    ++ +EA       H L          T    DH+D + T++AY  +  R
Sbjct: 162 --NLLLSDSSEYMVIEADEFDRSFHWLS---PYISVITATDPDHLDIYGTKEAYLES-FR 215

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II          ++ A   G ++ +   +    H + +   + +    
Sbjct: 216 KYTSLIQPGGALIIRKGIE-----LQPALQNGVKLYTYSQEEGDFHAENIRIGNGEIFFD 270

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +S  G   +    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 271 YVSPLGNIPNIQLGVPVSINIENGVAAMALAQMSGLTDEEIKRGMASFRGVDRRFDFKIK 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N +      DYAH  + ++  + ++R      ++  VF                 +L L 
Sbjct: 331 NDK-VVFLSDYAHHPSEIKQSILSMRALYRDKKLTAVFQPHLYTRTRDFYKDFADSLSLL 389

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D  I+ D  P  E P      + I   +  GI   + K    E I   +++L+K+D+ ++
Sbjct: 390 DEVILVDIYPAREQPIPGVTSKLIYDHLRPGIEKSMCK---KEEI---LDVLSKKDIEVL 443

Query: 464 V-AGKGH 469
           +  G G 
Sbjct: 444 ITLGAGD 450


>gi|264680245|ref|YP_003280155.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|299533117|ref|ZP_07046502.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
 gi|262210761|gb|ACY34859.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|298718894|gb|EFI59866.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
          Length = 477

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 141/431 (32%), Gaps = 54/431 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A     G++A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAAENVDGSDAVVTSTAVQGDNPEVLAAREKKIPVVPRALM-LAELMRFKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ G  GK++  S V  +   +GL      PT  I                L  A + 
Sbjct: 108 -IAIAGAHGKTTTTSLVTSVLAEAGLD-----PTFVIGGK-------------LNSAGAN 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  ++ VEA     D   L+ +  +    TN+  DH++ +             F  
Sbjct: 149 AKLGQGDYIVVEADES--DASFLNLL-PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLH 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
            +P    AI+  D    +E++ +       V + G+          V A   + + T+  
Sbjct: 206 RMPFYGRAILCVDSPAVREILPKLARP---VTTYGFAEDAQVRAVNVRAEAGRMRFTVRR 262

Query: 296 EGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +      D + +  LPGE  V NAL A  + + + I    +L  LE    V  RF+  G 
Sbjct: 263 QNGQSYPDLEVVLSLPGEHNVLNALSAVAVAMELEISDEALLRALEGFKGVGRRFQRYGE 322

Query: 352 ----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
               N     +  DY H    +   L   R    G+ +V+ F                  
Sbjct: 323 LPAANGGTFTVIDDYGHHPVEMAATLAAARGAFPGQRLVLAFQPHRYSRTRDCFEDFVKV 382

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLN 457
           +  AD  ++ +     E P  I A     +   +    ++E +                 
Sbjct: 383 IGSADSVLLAEVYAAGEAP--IVAADGRSLARALRVAGKVEPVFVENIADMPAAIAANAQ 440

Query: 458 KQDVLVVAGKG 468
             DVL+  G G
Sbjct: 441 AGDVLLCMGAG 451


>gi|270291458|ref|ZP_06197680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
 gi|270280304|gb|EFA26140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
          Length = 464

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 148/398 (37%), Gaps = 44/398 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRK----FLSLFASRLYGKHPENILAVTGTSGK 126
           I+      L   +  I    P+LV    +          A R+       ++ VTG++GK
Sbjct: 71  ILAQHHIELIVKNPGIPYTNPVLVAAKEQNVPIIAEPELAYRVMD---SELIGVTGSNGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V + +Q +  +    +  +     I   A        +   +   LS     G     
Sbjct: 128 TTVTTMIQLMLDQQDHHAAYV--AGNIGVPATTVVQKATANDRVVMELSSFMLAG----- 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                       +D +        N+  +H+D+H+T++ Y N KMR+  E   K+   +I
Sbjct: 181 ------------IDQLHPHIAVVNNIFSNHLDWHKTRENYVNDKMRI-TENQTKDDYFVI 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+   +++ +R      +V+    QG    L +  A     Q+    E         +
Sbjct: 228 NWDNPEWQQLAQRTA---AQVVPFSRQG----LVENGAYAKDGQLYFKNERIMAADEIGV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL A  +    G+ +  + + L+    V  R ++V T + G + Y D   T 
Sbjct: 281 PGDQNVENALAAIAVAKIEGVANKHIKQVLQTFSGVKHRIQYVKTLA-GRQFYNDSKAT- 338

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +E     ++       I++   G DR      ++  +   + ++ +    N ++    
Sbjct: 339 -DIEATQVALKAFQRP--IILIAGGLDRGDDYTRLVADLKPHVKEVIV----NGQTAAHM 391

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  A+   G+    +     +++  A E     DV+++
Sbjct: 392 QEAAQ-AAGVKVVKDSPRVKDSVAIAFEDSQPGDVILL 428


>gi|84496501|ref|ZP_00995355.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
 gi|84383269|gb|EAP99150.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
          Length = 972

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 130/397 (32%), Gaps = 54/397 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++ +  +  I +  G     +G TST      +  +          A  
Sbjct: 500 PIVAVTGTNGKTTTSRMIAHIMKGVGRK---VGMTSTDGIVVDERLVFKADASGPKSARM 556

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L +  V    +E +  G+ +  L   +      TN+  DH+      T +   + K  +
Sbjct: 557 VLQNPRVDFAVMEVARGGILREGLGYDRNDVAVVTNVAPDHLGLRGINTVEQLADVKAVI 616

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E  +P+   A++ ADD   +++ KR   +                         + + +
Sbjct: 617 VEA-VPRNGFAVLNADDPLVRKMRKRCSGSIVWFTMSPPGSAVREFVDDHCRRGGRAIVL 675

Query: 294 SVEGKDFDFLFPLPGEFQ---VYNALVAAGLCIAIGID----------------SALVLE 334
               K    +             + L A     A+                      + +
Sbjct: 676 EPSDKGDMIVIRHGRRAMQLAWTHLLPATFGGTAMFNVANAMAAAGAAFAVGTGLHEIRQ 735

Query: 335 HLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-------- 382
            L           GR   V  N+    + VDY H +  ++++   +              
Sbjct: 736 GLRTFSTSYYLSPGRMNQVNVNN--IDVIVDYCHNAPGMKVLGDFVERYADAKAGSSELG 793

Query: 383 ---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPG 438
              R+ V+   G  RD+  R + G IA    D+ +V +D   R   P +    +  G   
Sbjct: 794 KISRLAVIATAGDRRDEDMREL-GSIAAHHFDVMVVREDERLRGRKPGETAGLVAEGAKA 852

Query: 439 FIEKGNR----------IEAIRTAIEMLNKQDVLVVA 465
            +  G R          + A+R  +   N  D++VV 
Sbjct: 853 AMADGARCRQVEVVTEELSAVRHVMARANPGDIVVVC 889


>gi|306820503|ref|ZP_07454136.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551417|gb|EFM39375.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 520

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 120/345 (34%), Gaps = 30/345 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTG+ GK++V   + ++           G    +     +   T    I + + LS 
Sbjct: 180 VIGVTGSYGKTTVKQILGKLL----------GKDFNVLITPYNYNTTLGVTITIREYLSP 229

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L    V    + A   G  +   D +    G  T++G  H++   +       K  L  +
Sbjct: 230 LHD--VFVCEMGAKGVGEIKEICDIVNPKYGVITSIGEQHLETFLSVDNIIKTKFEL-AD 286

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P +    +  D+     +  +  +      +V Y+        +    N     + ++
Sbjct: 287 AVPDDGIVFLNYDNE---IIRNKKVDKNIVSYAVNYKNADFVPYDIKVDENGSIFYLDID 343

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+   F   + G   V N      +   +G+    +++ + ++  V  R + +  N   G
Sbjct: 344 GEKVKFETKIIGLHNVLNIAGCIAVAYKLGVTRQTLVQRVRQIEQVEHRQQVIKKN--FG 401

Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALDLAD 411
            I  D Y    +  +  L  +       + +V   G     ++        G+    +AD
Sbjct: 402 IIIDDAYNSNPSGAKSALDTLSMFD--MLKIVITPGMVELGEKQSSLNREFGRQIAKVAD 459

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
             I+   N      E IRAE       F+     ++ I+ A+++ 
Sbjct: 460 YTILVGKNHTIPIQEGIRAENYDEEKLFV-----VDDIKEALDIA 499


>gi|282600178|ref|ZP_05973287.2| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
 gi|282566125|gb|EFB71660.1| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
          Length = 472

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 152/429 (35%), Gaps = 54/429 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ +   A  +VVS+A S+ +          I V+    + L+      +G      +AV
Sbjct: 58  PENVEN-ASVVVVSTAISMDNPEIQAAKELRIPVIRRA-EMLAELMRYRHG------IAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++  + +  I  ++GL    +      S+          S  YL   ++     
Sbjct: 110 AGTHGKTTTTAMISGIYAQAGLDPTFVNGGLVKSAGTH---ARLGSSRYL---IAEADES 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             + +                ++ +    TN+  DH+D +Q            F   LP 
Sbjct: 164 DASFL---------------HLQPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPF 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK- 298
              A++  DD   + ++ +       + + G+ +   + + K     N+   TI+ EG  
Sbjct: 209 YGRAVMCIDDPVIRSLLPKIGR---YITTYGFSEDADVRITKYTQKGNQGFFTIAREGMP 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TN 352
           +   +   PG     NA  A  +    GID   +L  L +      RF+F+G       N
Sbjct: 266 ELTVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNYALRNVN 325

Query: 353 SRGGRI--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            + G +    DY H    ++  +K  R      RI+++F                  L  
Sbjct: 326 GKEGEVMLVDDYGHHPTEVDATIKAARAGWPDKRIVMIFQPHRYTRTRDLYDDFANVLGQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQD 460
            D+ ++ +     E P          +   I    +++ I  A          ++L+  D
Sbjct: 386 VDVLLMLEVYSAGEKPVPGADS--RSLCRTIRSRGQVDPIFVAEPEQVSHMLAQVLDGND 443

Query: 461 VLVVAGKGH 469
           +++V G G+
Sbjct: 444 LILVQGAGN 452


>gi|328950960|ref|YP_004368295.1| UDP-N-acetylmuramate--L-alanine ligase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451284|gb|AEB12185.1| UDP-N-acetylmuramate--L-alanine ligase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 452

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 101/285 (35%), Gaps = 29/285 (10%)

Query: 201 GIKLIAGSFTNLGRDHI--------DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +++     TNL  DH+        +YH++ +A   A  R  +         +  AD   
Sbjct: 166 HLQVNTALLTNLEDDHVAAPGQTRQNYHESFEALIQATRRFAQR----AGHVVYNADWPL 221

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQ 311
            +EV      AG   +  G +      + V       +  +  +G    +    + G   
Sbjct: 222 LEEV-----TAGLERVGFGLEHGAFRAEAVDLSPEGSRFRVVWDGTVLGEARLRVLGLHN 276

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL    +    G+D   V   L +      RFE VG    G  +  DYAH    +  
Sbjct: 277 VMNALGVIAVSALEGLDLEAVFAALAEFRGAHRRFERVG-EINGAWVVDDYAHHPTEVAA 335

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----E 426
            L+  R  T  R+ VVF         +       AL LAD A+V +     E P      
Sbjct: 336 TLQAARA-TGRRVRVVFQPHRYLRTLQMWERFAEALQLADEAVVLEVYAAGEAPIEGVSG 394

Query: 427 KIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           ++ AE +   G P    + +  +A     E     D+++  G G 
Sbjct: 395 RLIAERLQALGHPARFMEWDEAQA--YLTESARANDLILTMGAGD 437


>gi|307544553|ref|YP_003897032.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
 gi|307216577|emb|CBV41847.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
          Length = 507

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 136/420 (32%), Gaps = 45/420 (10%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+ A+ +VVS+A    +          I VV    + L+      +G      +AV GT 
Sbjct: 98  ARDADVVVVSTAVDETNPEIRWAQQHRIPVVRRA-EMLAELMRFRHG------IAVAGTH 150

Query: 125 GKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S    +    G   +F IG   T +                         +G  
Sbjct: 151 GKTTTTSLTATLLGEGGLDPTFVIGGRLTSAGVNARLG------------------EGDY 192

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V+    S     H    ++ +    TN+  DH+  +             F   LP    
Sbjct: 193 LVAEADESDASFLH----LQPMVAIVTNIDADHMATYGGDFERLKGTFIEFLHNLPFYGL 248

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDF 302
           A++  DDA  + +++R  N             +     V        +    +G    + 
Sbjct: 249 AVLCIDDANVRGLIERV-NRQFVTYGFSEDADYRLENFVQHGGEVSFIARRPDGLAPLEV 307

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-----NSRGGR 357
              +PGE    NA+ A  +    G++ A +L  L     V  RF+  G            
Sbjct: 308 RLAMPGEHNALNAMAAIAVASDAGVEDAAILRGLASFAGVGRRFQVHGHFASPQGEGEVM 367

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    +EM++K +R      R+++++                  L   D  ++ 
Sbjct: 368 LVDDYGHHPREVEMVIKAVREGWPERRLVMLYQPHRYSRTRDLFEDFVRVLAGVDTLLLL 427

Query: 417 DDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D     E P        +   I   G    I   ++ E      ++L   D+L+  G G 
Sbjct: 428 DVYSAGESPLPGADGRTLAGSIRQRGEVDPIFVQDKSELPELLAKVLRPGDILITQGAGD 487


>gi|288929761|ref|ZP_06423604.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288328862|gb|EFC67450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 443

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 126/363 (34%), Gaps = 42/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++  S +  I + +G   + +G    I          
Sbjct: 94  EFAARYTD---AKMVCITGSNGKTTTTSLIYHIFKAAG---YNVGLGGNIG--------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEA-SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ- 221
                   ++L+   ++G     V   SS  L+   +   K       N+  DH+D +  
Sbjct: 139 --------RSLALQVAEGAHEWYVIELSSFQLEN--MYRFKAHIAVLLNITPDHLDRYNY 188

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             Q Y +AKMR+ + L P++       D     E+ K   +A     +   +        
Sbjct: 189 CMQGYVDAKMRILQNLGPQDYFIYWADDPVVKPELQKYDVSARVCPFAENRETGAAAYVA 248

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              I     +  ++          LPG+  +YN+L AA    A GI   +V + L     
Sbjct: 249 DGQITLPAPLEFNMP----QARLSLPGKHNLYNSLAAALAARAAGIPQNVVEQGLSDFPG 304

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E V T      I    A   ++    L+ +   T     ++   G D+     PI
Sbjct: 305 VEHRMERVATMHGVNYINDSKATNVDACRYALEAMTAPT-----ILIIGGKDKGNDYEPI 359

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +    A +  +  DN       K+     H      +  +  E +     M      
Sbjct: 360 KDLVKEKCAALVYLGADNT------KLHQNFDHLGLPVADTHSMKECLTACAGMAKAGYT 413

Query: 462 LVV 464
           +++
Sbjct: 414 VLL 416


>gi|150003962|ref|YP_001298706.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides vulgatus ATCC
           8482]
 gi|294777997|ref|ZP_06743431.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides vulgatus PC510]
 gi|189028973|sp|A6L070|MURC_BACV8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149932386|gb|ABR39084.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides vulgatus ATCC
           8482]
 gi|294448055|gb|EFG16621.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides vulgatus PC510]
          Length = 458

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 132/367 (35%), Gaps = 43/367 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +G  + +   +++             
Sbjct: 110 HAGKGLCVAGTHGKTTTSTMTAHLLHQS-----HVGCNAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L S    ++ +EA       H L          T    DH+D + T++AY  +  R
Sbjct: 155 --NLLLSDSSEYMVIEADEFDRSFHWLS---PYISVITATDPDHLDIYGTKEAYLES-FR 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      I+          ++ A   G ++ +   +    H + +   + +    
Sbjct: 209 KYTSLIQPGGALIVRKGIE-----LQPALQNGVKLYTYSQEEGDFHAENIRIGNGEIFFD 263

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +S  G   +    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 YVSPLGNIPNIQLGVPVSINIENGVAAMALAQMSGLTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N +      DYAH  + ++  + ++R      ++  VF                 +L L 
Sbjct: 324 NDK-VVFLSDYAHHPSEIKQSILSMRALYRDKKLTAVFQPHLYTRTRDFYKDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D  I+ D  P  E P      + I   +  GI   + K    E I   +++L+K+D+ ++
Sbjct: 383 DEVILVDIYPAREQPIPGVTSKLIYDHLRPGIEKSMCK---KEEI---LDVLSKKDIEVL 436

Query: 464 V-AGKGH 469
           +  G G 
Sbjct: 437 ITLGAGD 443


>gi|103487364|ref|YP_616925.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingopyxis alaskensis
           RB2256]
 gi|123253129|sp|Q1GRY0|MURC_SPHAL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|98977441|gb|ABF53592.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingopyxis alaskensis
           RB2256]
          Length = 477

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 143/416 (34%), Gaps = 62/416 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +  A +    PI+        L            ++ +A+ GT GK++  S V  +   
Sbjct: 82  PEVEAALAQRIPIVRRAEMLAELMRL---------KSTVAIAGTHGKTTTTSLVAALLDA 132

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G+    I     I+++  + RL     +                  VEA        RL
Sbjct: 133 GGIDPTVING-GIINNYGSNARLGASDWM-----------------VVEADESDGSFLRL 174

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG        TN+  +H+D++ +  A  +A +  F E +P    A++  D    + ++ R
Sbjct: 175 DGT---IAVVTNIDPEHLDHYGSFDAIKDAFVE-FIENVPFYGAAMLCLDHPEVQAIIPR 230

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVY 313
             +          Q   +    V    +  +  + V  +D +         P+ G   V 
Sbjct: 231 IRDRRIITYGFSAQAD-VRGTNVTPGPDGNRFDVVVRDRDGNSRTIEGIHLPMSGRHNVQ 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLE 370
           NAL A  + + +G+    ++        V  RF  VG   T+     +  DYAH    + 
Sbjct: 290 NALAAVAVALHMGVPDEKIVSGFNGFAGVKRRFTKVGEIVTDEGVVTVIDDYAHHPVEIR 349

Query: 371 MILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKI 428
            +L   R     GR++ V                + A + AD+ +        E P E +
Sbjct: 350 AVLSAAREGAGAGRVVAVVQPHRFTRLRDHMDDFQQAFNDADMVLALPVYAAGESPIEGV 409

Query: 429 RAEIIHGIPGFIEKGNRIE---------------AIRTAIEMLNKQDVLVVAGKGH 469
            ++ +  + G  ++G+R                 +I+     L   D+++  G G 
Sbjct: 410 SSDAL--VRGLRDRGHRQANVVADADALAASLAASIKAG--DLGAGDMIICLGAGD 461


>gi|71277817|ref|YP_271115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
 gi|81174947|sp|Q47VQ7|MURD_COLP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71143557|gb|AAZ24030.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
          Length = 471

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 145/400 (36%), Gaps = 39/400 (9%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ I+ S    L  +  +A I  N   LV+ +   F  +  SR+    P  +LAVTG++G
Sbjct: 76  ADIIITSPGIDLVSEGITALIPENC--LVIGDVELFCLVNNSRIS---PMKMLAVTGSNG 130

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V S +  + +  G+++   G                P    L +   Y S       
Sbjct: 131 KSTVVSLLASLAKAIGVNAALAGNIG------------EPILNLLHRENVYNSQLANQPD 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            V           L  +  IA S  NL  DH+D H+T   Y   K  ++    P+   A+
Sbjct: 179 IVIVELSSFQLETLSSMHAIAASVLNLSDDHLDRHKTLANYQAIKQSIY----PQAKIAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D  S  ++         ++S G          + AI NK  +    +        P
Sbjct: 235 VSREDQASNTLVAA-----QEIISFGLNKPEQDCFGLQAIDNKMVMMFGEQALISIDELP 289

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     N + A  L  + G   + + E+L     +  R + V +      I    A  
Sbjct: 290 LAGMHNALNYMAALALGYSAGWSLSAMTENLAGFMGLAHRCQRVASEDYIQWINDSKATN 349

Query: 366 SNS-LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             + L  I   + T+T    +++   G  +      +   +  D+  +  +  D      
Sbjct: 350 VGATLAAITGLVPTLTGQNKLILIAGGDGKGADFSALTTILNCDVNQLITLGKDG----- 404

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                AEI   +   I+     EA+  A ++    D++++
Sbjct: 405 -----AEIASLVSDAIQVDTLREAVEQAKQIAKPGDMVLL 439


>gi|319639801|ref|ZP_07994531.1| UDP-N-acetylmuramate-L-alanine ligase [Bacteroides sp. 3_1_40A]
 gi|317388618|gb|EFV69467.1| UDP-N-acetylmuramate-L-alanine ligase [Bacteroides sp. 3_1_40A]
          Length = 458

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 132/367 (35%), Gaps = 43/367 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +G  + +   +++             
Sbjct: 110 HAGKGLCVAGTHGKTTTSTMTAHLLHQS-----HVGCNAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L S    ++ +EA       H L          T    DH+D + T++AY  +  R
Sbjct: 155 --NLLLSDSSEYMVIEADEFDRSFHWLS---PYISVITATDPDHLDIYGTKEAYLES-FR 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II          ++ A   G ++ +   +    H + +   + +    
Sbjct: 209 KYTSLIQPGGALIIRKGIE-----LQPALQNGVKLYTYSQEEGDFHAENIRIGNGEIFFD 263

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +S  G   +    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 YVSPLGNIPNIQLGVPVSINIENGVAAMALAQMSGLTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N +      DYAH  + ++  + ++R      ++  VF                 +L L 
Sbjct: 324 NDK-VVFLSDYAHHPSEIKQSILSMRALYRDKKLTAVFQPHLYTRTRDFYKDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D  I+ D  P  E P      + I   +  GI   + K    E I   +++L+K+D+ ++
Sbjct: 383 DEVILVDIYPAREQPIPGVTSKLIYDHLRPGIEKSMCK---KEEI---LDVLSKKDIEVL 436

Query: 464 V-AGKGH 469
           +  G G 
Sbjct: 437 ITLGAGD 443


>gi|325290584|ref|YP_004266765.1| FolC bifunctional protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965985|gb|ADY56764.1| FolC bifunctional protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 445

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 141/410 (34%), Gaps = 63/410 (15%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--------TIS 154
           SL A     +    I+ + GT+GK S A+F+  I + +G  +               TI 
Sbjct: 35  SLLARLGNPERSLKIVHIGGTNGKGSTAAFLSAILRSAGYRTGMFISPHLEDYRERITID 94

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV---------------------EASSHG 193
                          +   L  + + G+ H +                           G
Sbjct: 95  GQMIGRSDFVSLLKEIKPHLQAVVASGIEHPTEFEVSTVLAILYFARLQPDIVLMEVGLG 154

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +    + +  +    T++G DH+DY   T       K  + +E +P  + A        
Sbjct: 155 GEIDSTNVVNPLIAVITSIGLDHMDYLGRTIAEIARVKAGIIKEGVPVVTSA---EKAEA 211

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              + ++A      ++ VG    +         +  +Q  I            L G  Q 
Sbjct: 212 LAVLTEKARECQAELIRVGQDVSWQQRGPRSFDYQGRQWRIK------GLKPALLGRHQF 265

Query: 313 YNALVAAGLCIAI------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            NA  A  +C  +      GI    V++ L+       R E      +   I +D AH +
Sbjct: 266 SNACAALAVCEVLRDRYGFGITKENVVQGLQSAEWPC-RLEVFSAEPK---IVLDGAHNA 321

Query: 367 NSLEMILKNIRT------ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDN 419
           + +  +   + +      +   R+++  G   D++   R    +I   LAD  I+T  D+
Sbjct: 322 DGMTALRDALESELRDTVLAGKRLVLCLGMLADKE---REKAAEILFPLADQVIITKPDS 378

Query: 420 PRS---EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           PR+      + +   +I G        +  +A+R  +EML   D+L+V G
Sbjct: 379 PRAGNWRSLQDVAGRMI-GPDKVRSIEDPEQAVREGLEMLAPGDMLLVTG 427


>gi|119944904|ref|YP_942584.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas ingrahamii 37]
 gi|189029023|sp|A1SU20|MURC_PSYIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119863508|gb|ABM02985.1| UDP-N-acetylmuramate--L-alanine ligase [Psychromonas ingrahamii 37]
          Length = 487

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 140/418 (33%), Gaps = 48/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VVS+A +  +          I VV    + L+      +G      +AV+GT GK
Sbjct: 78  GASVVVVSTAINADNPELLAAQQARIPVVRRA-EMLAELMRYRHG------VAVSGTHGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I  ++     Q+ PT  I                    ++       + + 
Sbjct: 131 TTTTSLIASIYGQA-----QLDPTFVIGGLLNSAGTNAKLGQSRY-LIAEADESDASFL- 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++ +    TN+  DH+D ++            F + LP    A++
Sbjct: 184 --------------HLQPMVSVVTNIEADHMDTYEGNFEVLKDTFVRFIQNLPFYGTAVV 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLF 304
             DDA  ++++ R      + ++ G+ +   + +       N+ + ++  +         
Sbjct: 230 CLDDAVIEQLIPRFAR---QTVTYGFHEQADVRISDFSQCVNRSEFSVHRINKPAMKIQL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD 361
            LPG+    NA  A  + +   ID   + + L +   +  RFE  G   T      +  D
Sbjct: 287 NLPGKHNALNAAAAIAVAMEDDIDDFSISKALNEFAGIGRRFEQYGEFETGRGKAILVDD 346

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    ++  +   R      R+++ +                  L   D  ++ D   
Sbjct: 347 YGHHPTEVQATIDAARAAWPDKRLVMAYQPHRYTRTRDLYEDFAHVLAQVDQLLLLDVYA 406

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA------IEMLN---KQDVLVVAGKGH 469
             E P  I       +   I + +  E I  A        +       D+++  G G+
Sbjct: 407 AGETP--IAGADSRSLCRTIRQRSGKEPIFVASPEVLPAMLAQIIDDGDLVLTQGAGN 462


>gi|291566624|dbj|BAI88896.1| UDP-N-acetylmuramate--alanine ligase [Arthrospira platensis
           NIES-39]
          Length = 529

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 146/435 (33%), Gaps = 79/435 (18%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A   +  ++   +    PI    +    L   A           +AV GT GK++
Sbjct: 112 VICSTAIHPENAEYKVALELGCPIFHRSDLLAAL--MAEY-------QSIAVAGTHGKTT 162

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL      PT  +                     ++  +  V H    
Sbjct: 163 TSSLIAFLLLKAGLD-----PTILVGGEVS----------------AWEGNARVGHGPYL 201

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L  +    G  TN+  DH D+++      +   ++F     +    +   
Sbjct: 202 VAEADESDGSLVKLGAYIGIVTNIELDHPDHYKNLDQLIST-FKIFAN---QCETIVGCV 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFL-F 304
           D    ++ +K         +S            +  V  + +     +   G+    L  
Sbjct: 258 DCPIVRDYLK-------PTISYSINPELDADYTVDAVQYLADGVIAQVYERGEAIGLLKL 310

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   + NAL A  +   +  + +++ + + +      RFE+ G N  G +   DYAH
Sbjct: 311 QLLGSHNLSNALAAVAVGRLLNWEFSVIAQAIAEFPGTKRRFEYRG-NYGGIQFVDDYAH 369

Query: 365 TSNSLEMILKNIR-------------------TITSG----RIIVVFGCGGDRDQGKRPI 401
             + + + L   R                    I  G    R++ +F             
Sbjct: 370 HPSEIRVTLAAARGRLQNSSGLSSTFSETAITPIHPGSEIKRVVAIFQPHRYSRTETLLE 429

Query: 402 MGKIALDLADIAIVTDDNPRSE-DPEKI-----RAEIIHGIPGFIEKGNRIEAIRT-AIE 454
                   AD+ ++T+     E +P +I      A I    P    + + ++A++T   +
Sbjct: 430 DFAQCFGDADLVMLTEIYSAGEANPGRINGQQLAARIAENHPHVDYQPS-LDAVKTRLFQ 488

Query: 455 MLNKQDVLVVAGKGH 469
           +L   D+++  G G+
Sbjct: 489 LLKPGDLVLFLGAGN 503


>gi|302143800|emb|CBI22661.3| unnamed protein product [Vitis vinifera]
          Length = 626

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 136/444 (30%), Gaps = 78/444 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AIVVSSA    +       +  I V      +L             N++AV+GT GKS+ 
Sbjct: 119 AIVVSSAIPQDNLEILHAKSVGIPVYKRG-NWLGKLTEHY------NLIAVSGTHGKSTT 171

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           AS +  + +  G        T+ + +                  +          +    
Sbjct: 172 ASMLAYVLKSMGDD-----LTAVVGAQVPQFGGGNIMSGSGRNFVLEADEYDCCFL---- 222

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                      G+       TN+  +H+D    ++A   A  R F + +      I+  D
Sbjct: 223 -----------GLLPYIAVVTNVDWEHVDIFPDEEAV-KAIFRRFLKQIRVGGHLILCGD 270

Query: 250 DAYSKEVMKRAHNAGC--------------------RVLSVGYQ--GKFIHLKKVCAIHN 287
            A +  ++     +                      R+ + G     ++  L        
Sbjct: 271 SAGACSLLDDTEESTVADHSSGKLSTLNSDKCSDGYRITTFGISRTNEWHALSIRPNSQG 330

Query: 288 KQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID-------SALVLEHLEKL 339
                +   G    +    +PG   V N+L      +A+  D          V  HL   
Sbjct: 331 GSDFVLCHRGYPVANITLQIPGVHNVLNSLAVIATVMALVSDGRQSYESINCVKIHLNNF 390

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGK 398
             V  RFE +GT   G  IY DYAH    +  +L+  R       ++VVF          
Sbjct: 391 VGVSRRFELIGT-VCGCLIYDDYAHHPTEVRAVLQAARQRFPLKALLVVFQPHTYSRLAA 449

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII----HGIPGFIEKGNRIEA 448
                  A   AD  +VT+     E        + +   II      IP   +  +    
Sbjct: 450 LKSDFATAFSDADQVLVTEIYAARETNVWNVSGKDLATSIIGPPSEYIPSLGDVVD---- 505

Query: 449 IRTAIEMLNKQD---VLVVAGKGH 469
            + A ++  + D   V+   G G 
Sbjct: 506 -KLAHQISLEPDRETVVFTLGAGD 528


>gi|294793907|ref|ZP_06759044.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
 gi|294455477|gb|EFG23849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
          Length = 456

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 102/293 (34%), Gaps = 18/293 (6%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS ++        + A         +   + I     N+  DH+  H+T + Y  AK R+
Sbjct: 147 LSEVAYSMPADGFLVAELSSYQLETIKHFRPIGAIILNITPDHLARHKTMENYIAAKERI 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVT 292
           FE  L  +   ++  DD    ++  RA +   ++      +    +    C I       
Sbjct: 207 FENQLSTD-YLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGQCYIAKDGVAK 265

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  +D      +PG   + N L    L  A+G+    +   + + H V  R E V T 
Sbjct: 266 FVIADED----IHIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKT- 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G   Y D   T+  ++ ++K + +       V+   GG           ++  +    
Sbjct: 321 IDGITFYNDSKATN--VDSVVKALESFDQ---QVILLAGGHDKMTPLEDFMQLVKEHTKA 375

Query: 413 AIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I   +   R E   K       G+       +  EA+    ++    D++++
Sbjct: 376 VIFMGEAADRFEMAAK-----EAGVKPIYRALSMKEAVEQGYKLAETGDIVLL 423


>gi|157363503|ref|YP_001470270.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
 gi|189082509|sp|A8F4X2|MURC_THELT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157314107|gb|ABV33206.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
          Length = 445

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 135/408 (33%), Gaps = 48/408 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVV +     D    IR+ +  + V +  +FL          + +   AVTG+ GK++  
Sbjct: 62  IVVHTPAVHSDNPEIIRARSNGIRVVSRFEFL-----YDILNNGKTQFAVTGSDGKTTTT 116

Query: 131 SFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           + +    +  G   +  +G       F        P    L                   
Sbjct: 117 AMLAHCLKVLGEDPTVFLGGIHRSLEFGNYRPGKGPYVYELD------------------ 158

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYA 248
                 Q             TN   DH++ +   +Q Y +    +   ++      + ++
Sbjct: 159 ----ESQPEFSRFSPDYMIITNARGDHLENYSGDRQLYRDCFRSV---VMSTRKSVVTFS 211

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +D  + ++            + G        L         Q   I + GK+++    +P
Sbjct: 212 EDENTSDL---------GTWTFGKSINSTCRLIDRNRNGLFQFAKIEINGKEYNLTLKVP 262

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTS 366
           GE  + NA+    L  + G +   VL+ LE       RF   V    R   +  DYAHT 
Sbjct: 263 GEHNILNAMAVITLLWSAGHEVEEVLKALEDFTGTYRRFTVTVIDEKRKVYMIDDYAHTP 322

Query: 367 NSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED- 424
           + ++ +L   R    S + +V+F         +       AL  AD   +T+     E  
Sbjct: 323 DEIKSLLSTTREVFPSQKRVVIFQPHRYSRLMREDGNFAKALKDADEIYITEVYSAFEQT 382

Query: 425 -PEKIRAEIIHGIPGFIEKGNRIEAIRTAIE--MLNKQDVLVVAGKGH 469
            P+     I  G+  + +K   +      IE   L +  + +  G G 
Sbjct: 383 IPQISSKVIADGLVSYGKKAQYVADADLLIENFQLQENTIYLFVGAGD 430


>gi|297566098|ref|YP_003685070.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
 gi|296850547|gb|ADH63562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
          Length = 430

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 137/437 (31%), Gaps = 66/437 (15%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +++ DSR ++ G  F+A+ G K  G  F   A+  GA  ++   A+              
Sbjct: 34  DLTWDSRKVKPGSAFIALPGTKVHGREFAQAALQAGAALVLTDQAHPGA----------- 82

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + V +  + L      L  +    ++ V G+SGK++    + Q                
Sbjct: 83  -VQVADPARALLELGHALRKEFSGTVVGVGGSSGKTTTKEAIAQGL-------------- 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
               +         +P                 V +     G         +   G  T 
Sbjct: 128 ---GWPAPEGNLNNAPGLAQFFFRLQPHAPGAVVELGIDRLGEMAELCYLAEPHLGVLTT 184

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           LG +H++   T +     +  L          + +      + E++         + + G
Sbjct: 185 LGAEHLEGLGTLENVIREETGLLAS-------SPVRLASTQAAELVNLPG-----LKTYG 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +        +    +  +   + +        P PG   +  AL A  +   +G+    
Sbjct: 233 IEAGDFRATDLELSLDSTRFRFNGQ----RVYLPYPGFGPLLGALAALAVAELVGVALDP 288

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFG 389
           V+E L  L +  GR E +    +GG I+++ A+ SN  S+   L+ + +   GR  +V G
Sbjct: 289 VIERLAHLQLPFGRMERLH---KGGLIFLNDAYNSNPLSVRAGLEFL-SHLPGRKWLVLG 344

Query: 390 CGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
              +  +       + A   A    D+  V    P                 G +     
Sbjct: 345 EMRELGEESLAYHLEAARLAASVSPDVVFVGKYAPA-----------QAAETGKVGLETL 393

Query: 446 IEAIRTAIEMLNKQDVL 462
            EA           D++
Sbjct: 394 EEAKAYLKTHAQAGDLV 410


>gi|307132582|ref|YP_003884598.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
 gi|306530111|gb|ADN00042.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
          Length = 486

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 141/420 (33%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSSAIAADNPEIIAAHEARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVTSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DDA  +E++      G  + + G+     + L     +  +   T++ +GK   +    
Sbjct: 231 LDDAVIRELL---PKVGRHITTYGFSDDADVRLADYRQVGAQGLFTLARQGKPLLNVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGR 357
            PG     NA  A  +    GID   +L  L +      RF+F+G          S    
Sbjct: 288 APGRHNALNAAAAVAVATEQGIDDDAILRALARFQGTGRRFDFLGEFPLQPVNGKSGSAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      R++++F                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLML 407

Query: 417 DDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D     E P        +   I   G    I   +         + L   D+++V G G+
Sbjct: 408 DVYSAGEAPIPGADSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQGAGN 467


>gi|221638512|ref|YP_002524774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides KD131]
 gi|254766055|sp|B9KNJ5|MURD_RHOSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221159293|gb|ACM00273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides KD131]
          Length = 465

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 139/446 (31%), Gaps = 65/446 (14%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           G   +V S      Y   +          + V ++   F   FA+R +    +   ++ V
Sbjct: 66  GVALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+  + +  I   +G  +   G                         L    ++
Sbjct: 126 TGSNGKSTTTALIHHILSEAGRPTQMAGNIG-------------------RGVLDLDPAR 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 167 DGEVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   +  D+     +  +        RV+ +    K                    +G+
Sbjct: 225 RAVIGV--DEPEGLYLAGQLSVAPEDDRVIRISSGQKLERFGWSVFARKGFLAEWR-KGR 281

Query: 299 -----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                D   +  LPG     NA  A   C  +G+    +   L     +P R + VG   
Sbjct: 282 QMASIDLRAMPGLPGAHNHQNACAAYAACRTLGLAPRQIEAALASFAGLPHRSQTVGEKG 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT------SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +    A   +S    L+    I            +V          K  ++G  A 
Sbjct: 342 GVRFVNDSKATNVDSAAKALQAFPKIRWIAGGLGKDGGIVALQPHLGSVVKAYLIGHSAR 401

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D A     TD         +I   +   +    E+                 +V+++A  
Sbjct: 402 DFALQIGATD--------HEICETMERAVARAAEEA-------------QPGEVVLLA-P 439

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
              +     N EK+     + ++ +L
Sbjct: 440 AAASFDQYPNFEKRGEDFMEKVKALL 465


>gi|119492219|ref|ZP_01623629.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya sp. PCC 8106]
 gi|119453276|gb|EAW34442.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya sp. PCC 8106]
          Length = 525

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 139/421 (33%), Gaps = 65/421 (15%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A      ++ A      PI    +    L        G++    +AV GT GK++
Sbjct: 117 VVCSTAIHPENPEYKAAQALGCPIFHRSDILAAL-------IGEYQS--IAVAGTHGKTT 167

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    +       +  + N     SP  +A+A     S         
Sbjct: 168 TSSLIAYMMLEAGLDPTIL--VGGEVNAWEGNARVGQSPYLVAEADESDGS--------- 216

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                     L       G  TN+  DH D++QT     +     FE         I   
Sbjct: 217 ----------LVKFSPAIGIITNIELDHPDHYQTLDQVIST----FETFTEHCQTLIGCI 262

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           D A  +E            +S       G    +  V    +     +S  G+       
Sbjct: 263 DCATVRE-------RIQPQISYSLDPNSGADYTVDAVEYGSDGSLAQVSERGQLLGQLHV 315

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  + N L A  +   +G++ + + E +        RFE  G +S       DYAH
Sbjct: 316 KLLGQHNLQNTLAAVAVGRLVGLEFSAIAEAISTFEGAKRRFEHRG-SSNDILFIDDYAH 374

Query: 365 TSNSLEMILKNIR---------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +   L   R          I   R++ +F                     AD+ ++
Sbjct: 375 HPSEIRATLGAARLRKGSHTATNIPVQRVVAIFQPHRYSRTQTFLSEFSQCFADADLVVL 434

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           TD     E        +++   I    P    + + +E+++T + E+L   D+ +  G G
Sbjct: 435 TDIYSAGEANTGQINGQQLADSIGTYHPQVYYRQS-LESVKTLLSEILKPGDLALFLGAG 493

Query: 469 H 469
           +
Sbjct: 494 N 494


>gi|238797706|ref|ZP_04641201.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
 gi|238718458|gb|EEQ10279.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
          Length = 491

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 130/421 (30%), Gaps = 51/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRYRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   +E++ R                                   ++          P
Sbjct: 231 IDDPVVRELLPRV-GRHITTYGFSDDADVQIASYRQEGPQGHFTIKRLDKPLMTVTLNAP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--RIY 359
           G     NA  A  +    GI+   +L  L        RF+F+G       N + G   + 
Sbjct: 290 GRHNALNAAAAIAVATEEGIEDEDILSALAGFQGTGRRFDFLGNFPLALVNGKEGSAMLV 349

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    ++  +K  R      RI++VF                  L   D+ ++ D 
Sbjct: 350 DDYGHHPTEVDATVKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQVDVLLMLDV 409

Query: 419 NPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E P            IR     G    I   +         ++LN  D+++V G G
Sbjct: 410 YAAGEAPIPGADSRSLCRTIRN---RGKLDPILVSDSETVPEVLAQVLNGDDLILVQGAG 466

Query: 469 H 469
           +
Sbjct: 467 N 467


>gi|227485010|ref|ZP_03915326.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237007|gb|EEI87022.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 468

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 136/402 (33%), Gaps = 46/402 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           A   ++     + + P++    TR  FL            +N +A++G+ GKS+  S + 
Sbjct: 81  ADDNEELIEAKKLDAPVV----TRGVFLGALMRNY-----KNSIAISGSHGKSTTTSMIS 131

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +I   S  +     PT  +     D +              +L ++   +          
Sbjct: 132 KILLHSDEN-----PTILLGGILDDMKGNVKVGNE-----DFLVTEACEYKGNIRYYF-- 179

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                           N+  DH+DY++      N           + S  I+  ++  +K
Sbjct: 180 ---------PQTVIILNIDEDHLDYYKDLNDIVNTFKEYLRNQ-DENSKTILNLNEENNK 229

Query: 255 EVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQ-QVTISVEGKDF-DFLFPLPGEF 310
            ++         +++ G +      +   +      +    + ++  D   F   + G  
Sbjct: 230 LILDAVQG---DLITYGQENPDADYYATNINFDEVGRPSFDLMMKNGDVEHFKLGVIGRH 286

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA+ +       GID   + E++ K   +  R + +G  ++   I  DY H  + + 
Sbjct: 287 NINNAMASIIATYENGIDINTIRENILKYTGLDRRMQIIGHVNK-TTIMTDYGHHPSEIL 345

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DP--- 425
           + L  ++  T GR+I V+                 + + AD  IVTD     E  DP   
Sbjct: 346 VTLDALKEHTKGRLICVWQPHTYSRTKTLFNDFLNSFNSADEIIVTDIYAAREKFDPTIH 405

Query: 426 -EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + +   ++             EA      ++   D+++  G
Sbjct: 406 SKDVVDAMVKKGLNAKYISTFEEARDYIYTIIKDDDLVITTG 447


>gi|323489497|ref|ZP_08094724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
 gi|323396628|gb|EGA89447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
          Length = 454

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 123/354 (34%), Gaps = 47/354 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + +  +  +   +    G   T++S   +               
Sbjct: 112 APFIGITGSNGKTTTTTLLFHMLNQDNKNPLIAGNIGTVASGVAEKAKP----------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     +  E SS  L     +  +      TN+   H+DYH + + Y  +KM+L 
Sbjct: 161 -------ENVIVTELSSFQL--KGTEAFRPTIAIITNIYEAHLDYHGSIEDYRASKMKLT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                ++      AD      +++ A N   +++    +G+          +      + 
Sbjct: 212 SNQTAEDYFIY-NADQPL---LVEHAKNCKAKLVPFTLKGRTEESVSADENY------VY 261

Query: 295 VEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G++        L G+  + N L A    +  G     ++  L     V  R +F+   
Sbjct: 262 WQGEELIERSKIMLAGQHNLENILAATAATLIQGGTKETIIRVLTSFTGVKHRSQFIKEW 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              GR + + +  +N+L      +        I++   G +R+     I   +       
Sbjct: 322 Q--GRKFYNDSKATNAL-ATKSALEAFPEN--IILLAGGLERNHSLDEIRPFM---DRVK 373

Query: 413 AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +VT      E  +     AE   G+   I+ G   +A+  AI+     D +++
Sbjct: 374 VLVT----FGETAQRFTTFAE-ESGVKTIIQAGKMDDAVEKAIQASADGDTILL 422


>gi|310765084|gb|ADP10034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
           Ejp617]
          Length = 438

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 152/400 (38%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S   +L   S    +   + ++ +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIIASPGVALAHPSLMAAAQNGVEIIGDVELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G    Q+G    I                   AL+ L  Q      +
Sbjct: 118 TVTTLVGEMAKAAGW---QVGTGGNIG----------------LPALTLL-QQPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH+D +    Q Y  AK+R++E      +  ++
Sbjct: 158 ELSSFQLE--TTSSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYEN----ATVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +           + V+G+        
Sbjct: 212 NADDAMTMPV----RGADARCVSFGADVGDYHLTRQQGSTW-----LRVQGEKVLNTDEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L+ L   + +P RF+ V  ++    I    A 
Sbjct: 263 HLVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQRVHEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +    +G + ++   G  +     P+   +  D   I     D     +
Sbjct: 323 NVGSTEAALNGL--HPAGILWLLL-GGDGKSADFSPLTRYLQGDRIRIYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+       ++     EA++     +   D++++
Sbjct: 377 LAALRPEVA------VQTETMAEAVQQIAARVQPGDLVLL 410


>gi|189502458|ref|YP_001958175.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189497899|gb|ACE06446.1| hypothetical protein Aasi_1103 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 467

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 125/364 (34%), Gaps = 27/364 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            LA+ GT GK++  S    +             T+ +   A++      +     +  S 
Sbjct: 113 TLAIAGTHGKTTSTSLAAHVL-----CHANRNITAFLGGIAKNYNSNFIASSNTEQESSI 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +                        +       T +  DH+D ++ Q  +     + F  
Sbjct: 168 VIEADEFDRFFL------------KLHPDIAIITTVDPDHLDIYKDQDGFEEG-FKQFLS 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK+  AI++ D A  + +   ++    +V+    +   I    +       +      
Sbjct: 215 RLPKQGIAILHHDVAK-RLIDDESYPTQAQVIQYALKDSPICADNIYISETG-RFCFDYI 272

Query: 297 GKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + F   D   P+PG   + NAL     C+ IGI   ++ E +     +  RF+ +    
Sbjct: 273 SEKFVIRDIQLPVPGYHNIENALAVITACLHIGIAPEIIREAIHTFQGIARRFDLI-IQR 331

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
                  DY H    +  +L  IR +   + + V+F                 +L LAD 
Sbjct: 332 NDLVFIDDYGHHPVEITALLTTIRKLYPNKKVTVIFRPNQYSRTKDFLQEIAQSLSLADC 391

Query: 413 AIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            ++ D     E P E I +E I+  I    +     E +   +  ++K +V+V  G G  
Sbjct: 392 VLILDIYSDREVPIEGINSEAILQHITLPYKYACTKEDLVLQLAQVDKLEVVVNLGAGDA 451

Query: 471 TVHI 474
              I
Sbjct: 452 DEFI 455


>gi|237724910|ref|ZP_04555391.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D4]
 gi|229436648|gb|EEO46725.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides dorei 5_1_36/D4]
          Length = 465

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 145/421 (34%), Gaps = 51/421 (12%)

Query: 60  IPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           I  A    A   +V + A        T        +   + + L +        H    L
Sbjct: 70  ITDAFRNPATTLVVYTPAVPDTHKEFTYFRENGFEIHKRS-QVLGML------THAGKGL 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT GK++ ++    +  +S      +G  + +   +++               + L 
Sbjct: 123 CVAGTHGKTTTSTMTAHLLHQS-----HVGCNAFLGGISKNYGT------------NLLL 165

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S    ++ +EA       H L          T    DH+D + T++AY  +  R +  L+
Sbjct: 166 SDSSEYMVIEADEFDRSFHWLS---PYISVITATDPDHLDIYGTKEAYLES-FRKYTSLI 221

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEG 297
                 I+          ++ A   G ++ +   +    H + +   + +     +S  G
Sbjct: 222 QPGGALIVRKGIE-----LQPALQNGVKLYTYSKEEGDFHAENIRIGNGEIFFDYVSPLG 276

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    +P    + N + A  L    G+    +   +     V  RF+F   N +   
Sbjct: 277 NIPNIQLGVPVSINIENGVAAMALAQMSGLTDEEIKRGMASFRGVDRRFDFKIKNDK-VV 335

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DYAH  + ++  + ++R      ++  +F                 +L L D  I+ 
Sbjct: 336 FLSDYAHHPSEIKQSILSMRALYRDKKLTAIFQPHLYTRTRDFYKDFADSLSLLDEVILV 395

Query: 417 DDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LVV-AGKG 468
           D  P  E P      + I   +  GI   + K    E I   +++L+K+D+ +++  G G
Sbjct: 396 DIYPAREQPIPGVTSKLIYDHLRPGIEKSMCK---KEEI---LDVLSKKDIEVLITLGAG 449

Query: 469 H 469
            
Sbjct: 450 D 450


>gi|319900367|ref|YP_004160095.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides helcogenes P
           36-108]
 gi|319415398|gb|ADV42509.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides helcogenes P
           36-108]
          Length = 480

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 130/407 (31%), Gaps = 46/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V + A   Q        +    V   + + L +             L V GT GK++ +
Sbjct: 75  VVYTPAVPQQHTELAYFRDNGFEVHKRS-QVLGIITR------SSKGLCVAGTHGKTTTS 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    +  +S      +G T+ +   +++               + L SQ   +  +EA 
Sbjct: 128 TMAAHLLHQS-----HVGCTAFLGGISKNYGT------------NLLLSQSSPYTVIEAD 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H L          T    DH+D + T++AY  +  R +  L+      II+   
Sbjct: 171 EFDRSFHWLS---PWMSVITATDADHLDIYGTKEAYLES-FRHYTTLIRPGGALIIHKGL 226

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
               +V       G    +        H + +     +  +          D    +P  
Sbjct: 227 ELQPDV-----QPGVTTYTYSRNEGDFHAENIRIGGGEIFIDFVAPDTRINDVRLGVPVG 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N + A  L    G     +   +     V  RF+F    +       DYAH    +
Sbjct: 282 INIENGIAAMALAHLSGATDEEIKRGMASFRGVDRRFDF-KLKTDETVFLSDYAHHPAEI 340

Query: 370 EMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
              +K+IR +   + I  +F                 +L L D  I+T+  P  E P   
Sbjct: 341 AQSVKSIRELYQDKKITAIFQPHLYTRTRDFYKDFADSLSLLDEVILTEIYPAREQPIPG 400

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              + I   +  GI   I    R E I   +      +VL+V G G 
Sbjct: 401 VSSKLIYDNLRPGIEKCIC---RKEDILKLLAE-KHIEVLIVLGAGD 443


>gi|126663232|ref|ZP_01734230.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624890|gb|EAZ95580.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteria bacterium BAL38]
          Length = 444

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 119/354 (33%), Gaps = 41/354 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++       + + +GL+    G      SFA            L   L
Sbjct: 101 AKTVGITGSNGKTTTTLLTYHVLKEAGLNVGLAGNIG--KSFAWQVAENKHDIYVL--EL 156

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
           S     GV +                  K      TN+  DH+D +      Y N+K R+
Sbjct: 157 SSFQLDGVFNY-----------------KPNIAIITNISPDHLDRYNYDYSLYINSKFRI 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            +     +       D+A  K  +K      N     L+   + +   L +         
Sbjct: 200 TKNQTEADYLIYDNEDEA-IKNWLKNNTIKANKVPFSLTTKPEAEGGFLDENNMNSTINN 258

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T ++   +      L G+  + NA+ A  +   + I    + E L        R E V 
Sbjct: 259 DTFTMPINE----LALEGKHNIKNAMAATAVAQLLNIRKQTIRESLTNFQGAEHRLEKVL 314

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  I    A   NS+      + ++T+  + +V   G D+      +M  +   + 
Sbjct: 315 KIQGVQYINDSKATNVNSV---FYALDSMTTPTVWIV--GGVDKGNDYDELMPLVREKVK 369

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I  +  DN       KI     + +   +E  +  EA++ A  +  K D +++
Sbjct: 370 AIVCLGVDNT------KISNTFNNVVDIMVETTSMAEAVQIAQRLAEKGDSVLL 417


>gi|167464919|ref|ZP_02330008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384122|ref|ZP_08057840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151202|gb|EFX44511.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 463

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 133/411 (32%), Gaps = 61/411 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              +V +              +  I +V        +            I+ +TG++GK+
Sbjct: 73  VSLVVKNPGIPYTALPVQWAIDRHIEIVTEVEVAYRM--------SKAPIIGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V ++ + + LS    G    I     +  L       L   LS    +G T    
Sbjct: 125 TTTTLVGKMLEEAELSPVVAG---NIGRALSEAALDANETDRLVVELSSFQLKGTTDF-- 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                          +       N+   H+DYH + + Y  +K +LF     +E  A+I 
Sbjct: 180 ---------------RPHIACLLNVYETHLDYHGSMEDYVASKAKLFANQT-QEDTAVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   + ++          +  G     +  K +  ++  +   I    +       LP
Sbjct: 224 WDDPVCRSLV--------PTIKAGLMPFSMKEKLLPGVYLDEHQKIVFTDRSGATHTILP 275

Query: 308 GE-------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +         + NAL A+ + +  G++ + +   L+    V  R E+VGT         
Sbjct: 276 AKELGIRGSHNIENALAASAIALCAGVNISNIAGVLKLFRGVEHRLEYVGTYHNLEFYND 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV---TD 417
             A    +    ++          +V+   G DR    R ++  +   +  +  +    +
Sbjct: 336 SKATNPAATIKSIEAFEQ-----PLVLIAGGLDRGSDYRELIPVLQERVKALVTLGQTGE 390

Query: 418 DNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              R+ +   +      +   G+   I      EA+  A  +    D +++
Sbjct: 391 KIQRAAEQAGLTRRKSVDTAKGVQEAI-----AEAVELAALLAEPGDTVLL 436


>gi|240850891|ref|YP_002972291.1| UDP-N-acetylmuramate--alanine ligase [Bartonella grahamii as4aup]
 gi|240268014|gb|ACS51602.1| UDP-N-acetylmuramate--alanine ligase [Bartonella grahamii as4aup]
          Length = 475

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 143/435 (32%), Gaps = 49/435 (11%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G     GH    + +   AE +V S+A    +          + +V        L   R
Sbjct: 51  KGINVHIGH--CAENLGN-AEVVVFSTAVKKTNPEYIAAKERHLPLVRRAEMLAELMRFR 107

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AV GT GK++  S V  +   +G     +     I+++  ++R      +
Sbjct: 108 -------RAIAVGGTHGKTTTTSMVAALLD-AGHFDPVVINGGIINAYGTNSRTGDGDWM 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +    S                          +       TN+  +H+D++ +  A   
Sbjct: 160 IVEADESD--------------------GTFLKLPADIAVITNIDAEHLDHYGSFDAVRE 199

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A  R F E +P    A++  D    + +  R  +          Q     L  +     K
Sbjct: 200 A-FRQFVENVPFYGFAVLCLDHPEVQSLAGRIDDRWVITYGANPQADVRFL-NLSMDGQK 257

Query: 289 QQVTISVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               + V  +         + L P+ G+  V NA  A  +   +GI +  +   L +   
Sbjct: 258 THFDVLVRSRKTGRKIELKNLLLPMAGQHNVANATAAIAIAHELGISNEAIKRGLAEFGG 317

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  RF   G+  RG  I+ DY H    ++ +L+  R    GR+I +              
Sbjct: 318 VKRRFTRTGSW-RGIEIFDDYGHHPVEIKAVLRAARESAKGRVIAIAQPHRYSRLYHLFD 376

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIE 454
                 + AD  ++T      E+P      +++   I + G        +  + +    +
Sbjct: 377 DFSACFNDADTVLITPVYAAGEEPIVGFGSQELVEHIKMAGHRDVRLIHSLEDVVSFVSK 436

Query: 455 MLNKQDVLVVAGKGH 469
               +D +V  G G+
Sbjct: 437 FAQAEDYVVFLGAGN 451


>gi|256425928|ref|YP_003126581.1| UDP-N-acetylmuramate--L-alanine ligase [Chitinophaga pinensis DSM
           2588]
 gi|256040836|gb|ACU64380.1| UDP-N-acetylmuramate/alanine ligase [Chitinophaga pinensis DSM
           2588]
          Length = 463

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 137/437 (31%), Gaps = 65/437 (14%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           Q   Q A+ IV + A                 VV  +   L      LY       + V 
Sbjct: 61  QLADQQADLIVYTPAIPASHTELIWFREKGFEVVKRS-DVLQEITKELYA------ITVG 113

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++ ++ +  I + +G      G  + +   + +            +       Q 
Sbjct: 114 GTHGKTTTSTLIAHILRHTGY-----GCNAFLGGISANY----------DRNFWSSDKQV 158

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
               + E     L  H            T +  DH+D + T++    A ++    +  K 
Sbjct: 159 AVIEADEYDRSFLKLH------PDVAVLTAIDADHLDIYGTEEEVQEAFIQYTRNIKAKG 212

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDF 300
           +                           +      I+   +       +   I       
Sbjct: 213 TLVA-----KQGLHRAAELKGDNHIWYHLEDNKADIYAANIRPDEGGYRFDVIQHNWTLT 267

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+ G   + N + A  +   +GI    +   +     +  RFE++  N     I  
Sbjct: 268 DIYLPIGGTHNIENTVAAIAVAHLLGIADEKIKAAIADFKGIKRRFEYLVKNDYQIYI-D 326

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDN 419
           DYAH    L  ++ + R +   R  VV        + +    G   +L LAD  ++    
Sbjct: 327 DYAHHPEELRALISSARALFPDRKCVVLFQPHLYTRTRDFATGFAESLSLADEVLLLPIY 386

Query: 420 PRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL-----------VVAGK 467
           P  E P E + +E+I  +            I   ++++ K+DVL           + AG 
Sbjct: 387 PARELPIEGVHSEMIAKM------------ITKPVQVIRKEDVLSWVKANSAPLFITAGA 434

Query: 468 GH-----ETVHIVTNGE 479
           G      E V  V NG+
Sbjct: 435 GDIDQFREPVEEVLNGK 451


>gi|238784568|ref|ZP_04628575.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
 gi|238714534|gb|EEQ06539.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
          Length = 491

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 139/423 (32%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRYRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  ++         
Sbjct: 231 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI- 358
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G + 
Sbjct: 288 APGRHNALNAAAAVAVATEEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSVM 347

Query: 359 -YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DY H    ++  +K  R      RI++VF                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATVKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQVDVLLML 407

Query: 417 DDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D     E P            IR     G    I   +         ++LN  D+++V G
Sbjct: 408 DVYAAGETPIPGADSRSLCRTIRN---RGKLDPILVSDSETVPEVLAQVLNSDDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|193213699|ref|YP_001999652.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
 gi|226711893|sp|B3QLW6|MURD_CHLP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193087176|gb|ACF12452.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
          Length = 467

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 139/409 (33%), Gaps = 54/409 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE  VVS                 I VV          AS         I+ +TGT GK+
Sbjct: 69  AELCVVSPGIPRTAPVIREMEARGISVVSEI-----ELASWFCR---ARIIGITGTDGKT 120

Query: 128 SVASFVQQICQ----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           + A+ + +IC+    + G  +F +G   T   F+ +     P  I + + LS    +G  
Sbjct: 121 TTATLIHRICEADGEQQGYRAFSVGNIGT--PFSSEVSGMEPDDIAVLE-LSSYQLEGC- 176

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKES 242
                              +      TN+  DH+D +     AY  AK R+       ++
Sbjct: 177 ----------------SSFRPNIAVLTNITPDHMDRYGGDIHAYARAKFRIHASQQAGDT 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFD 301
                 DD   +   +       +V+  G + + F  + +         + I   G    
Sbjct: 221 LIY-NHDDPLLRAHFEGDGPWPFKVVRTGLKAESFEGVSEDFVSVADGWIVIRTAGLTEQ 279

Query: 302 FLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           F+           GE  +YN L +     A G+    V   L +   V  R EFVG+   
Sbjct: 280 FMPVDEVMKPGFRGEHNLYNVLSSVAAARAAGVRDDAVRRSLSEFGGVEHRQEFVGSFCG 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   N++    + ++T+ +G   V+   G D+      I   +   ++ I  
Sbjct: 340 VDWINDSKATNVNAMR---QALQTVPAGM--VLIAGGRDKGNDYASIAELVKEKVSCIVA 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +       E   KI AE   G+    E  +  EA+  A +       ++
Sbjct: 395 I------GESRGKI-AEAFRGVVPVFEAASLHEAVELARQSARPGGSVL 436


>gi|237709496|ref|ZP_04539977.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 9_1_42FAA]
 gi|265754702|ref|ZP_06089754.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_1_33FAA]
 gi|229456552|gb|EEO62273.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 9_1_42FAA]
 gi|263234816|gb|EEZ20384.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_1_33FAA]
          Length = 458

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 145/421 (34%), Gaps = 51/421 (12%)

Query: 60  IPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           I  A    A   +V + A        T        +   + + L +        H    L
Sbjct: 63  ITDAFRNPATTLVVYTPAVPDTHKEFTYFRENGFEIHKRS-QVLGML------THAGKGL 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT GK++ ++    +  +S      +G  + +   +++               + L 
Sbjct: 116 CVAGTHGKTTTSTMTAHLLHQS-----HVGCNAFLGGISKNYGT------------NLLL 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S    ++ +EA       H L          T    DH+D + T++AY  +  R +  L+
Sbjct: 159 SDSSEYMVIEADEFDRSFHWLS---PYISVITATDPDHLDIYGTKEAYLES-FRKYTSLI 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEG 297
                 I+          ++ A   G ++ +   +    H + +   + +     +S  G
Sbjct: 215 QPGGALIVRKGIE-----LQPALQNGVKLYTYSKEEGDFHAENIRIGNGEIFFDYVSPLG 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    +P    + N + A  L    G+    +   +     V  RF+F   N +   
Sbjct: 270 NIPNIQLGVPVSINIENGVAAMALAQMSGLTDEEIKRGMASFRGVDRRFDFKIKNDK-VV 328

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DYAH  + ++  + ++R      ++  +F                 +L L D  I+ 
Sbjct: 329 FLSDYAHHPSEIKQSILSMRALYRDKKLTAIFQPHLYTRTRDFYKDFADSLSLLDEVILV 388

Query: 417 DDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LVV-AGKG 468
           D  P  E P      + I   +  GI   + K    E I   +++L+K+D+ +++  G G
Sbjct: 389 DIYPAREQPIPGVTSKLIYDHLRPGIEKSMCK---KEEI---LDVLSKKDIEVLITLGAG 442

Query: 469 H 469
            
Sbjct: 443 D 443


>gi|225872736|ref|YP_002754193.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
 gi|254766033|sp|C1F460|MURD_ACIC5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225794452|gb|ACO34542.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 461

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 87/418 (20%), Positives = 146/418 (34%), Gaps = 55/418 (13%)

Query: 60  IPQ--AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-------LSLFASRLY 110
           I Q  A+  G   ++      L   S  +  +TP LV    RKF       + L A  L 
Sbjct: 50  IEQGIAVEAGGHGLLTFRRQDLIVVSPGVPLDTPELV--QVRKFGLPIIGEVELAARFLK 107

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G      LA+TG++GK++  S    I +R+       G          D+          
Sbjct: 108 G----KTLAITGSNGKTTTTSLCGAILERAHQHVQVGGNIGLPVIALVDDSRDDGWS--- 160

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                           +E SS  L+    +  +       N+  DH+D H + + Y  AK
Sbjct: 161 ---------------VLEISSFQLE--TTERFRPGIAVILNITPDHLDRHGSFENYVAAK 203

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQ 289
            R+F      ++  +   DDA S+   + +        + V  QG F+H   +     + 
Sbjct: 204 ERIFAAQTHDDALILNADDDAASRAAARASSRIFWFSRNRVIRQGAFVHEGNILFRAAED 263

Query: 290 QVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             T     +    L  +P +    V N L A       G+ +  + + +     V  R E
Sbjct: 264 AAT-----EPILPLSEIPLKGAHNVENVLAAVCAARLAGVSAEAIRDAVRDFRAVEHRLE 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV     G   Y D   T+  ++   K I     G  I +   G D++   R +   +A 
Sbjct: 319 FVAEIG-GVSFYNDSKATN--VDAARKAIEAFPGG--IHLILGGKDKNSDYRTLRPLMAG 373

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +  +  +          EKI   +   +P  I  G    A+  A    +  DV+++A
Sbjct: 374 RVKAVYTIGS------AAEKIMTHLDGAVP-LIAAGTLDLAVNLAGGAASPGDVVLLA 424


>gi|42046|emb|CAA35611.1| unnamed protein product [Escherichia coli K-12]
          Length = 438

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 147/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +  +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVTATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL    L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALARVALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|289423178|ref|ZP_06424993.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156509|gb|EFD05159.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 457

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 129/338 (38%), Gaps = 41/338 (12%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V +I +  G+ ++ +G    I + A +          L   LS               
Sbjct: 128 SLVGEIFKAQGVETYVVG---NIGNPAIEAVEMAGDGAVLVTELSSFQ------------ 172

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                   +D     A +  NL  DH++ H T + Y  AK R+FE  +  ++  I+  DD
Sbjct: 173 -----LESIDMFSPTASTVLNLTEDHLNRHHTMENYAKAKARIFENQV-DDTVCILNYDD 226

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
             ++ +   A +    V+    + KF        + +   + ++ E ++   L      L
Sbjct: 227 PITRSM---AEDCHADVVFFSRKDKFERG---IYLDDDNNIIVNNEIEEIALLKADELSL 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + N + A GL +A+G++  ++++ L+    V  R E+V T      +        
Sbjct: 281 PGGHNLENCMAAIGLTLALGVEIEVLVKVLKTFKAVEHRLEYVDTVKGVKYVNDSKGTNP 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +S    +K +++      I++   G D+      +       +  + I+       E+  
Sbjct: 341 DS---TIKAVQSYKDP--IILIAGGYDKGSDFNELFEIAKDYVRSVVILGQTGDLIEETA 395

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      HG        +  EA+  + ++  ++D++++
Sbjct: 396 R-----KHGFTDLYRVNDLKEAVEKSAQIAKEKDIVLL 428


>gi|301058489|ref|ZP_07199502.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [delta proteobacterium NaphS2]
 gi|300447411|gb|EFK11163.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [delta proteobacterium NaphS2]
          Length = 399

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 110/308 (35%), Gaps = 23/308 (7%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A R +    +  + V+GT GK++ AS V  I +++G+             F         
Sbjct: 30  AIRQFAIQEKKAIVVSGTHGKTTTASLVAWILEQAGMDP----------GFMIGGIPRNF 79

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
              +     +Y   +G  + S          H            T++  DH D ++    
Sbjct: 80  ESNFKLGEGAYFVIEGDEYDSAFFDKGPKFLHY----NPSLVILTSIEFDHADIYRNLDH 135

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCA 284
             ++  +L   L+P +   I   DD   K + +    A C++ + G+       L  V  
Sbjct: 136 VVDSFRKLI-HLIPGDGYLIANGDD---KIICRETKGALCKLETYGFDKANDWRLGDVGD 191

Query: 285 IHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             +    ++   G++ D   F  PL G   V N L A  L  A+G+    +   LE    
Sbjct: 192 SEDLTAFSVIRNGQEEDNKTFKTPLFGRHNVSNCLSAVALAHALGVSKGALSMALESFKG 251

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E +G   RG  +  D+AH   ++   ++ ++     R +VV          +   
Sbjct: 252 VKRRQEIIG-KKRGITVMDDFAHHPTAVRETVRAVKGKYPHRRLVVVFEPRSNSSRRNIF 310

Query: 402 MGKIALDL 409
             + A   
Sbjct: 311 QAQYAESF 318


>gi|241667549|ref|ZP_04755127.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876094|ref|ZP_05248804.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842115|gb|EET20529.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 452

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 143/412 (34%), Gaps = 46/412 (11%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTR--------KFLSLFASRLYGKHPENILAVTGTSGK 126
           S Y +  +S+ I  N P+L               FL+L             +AVTGT GK
Sbjct: 60  SDYDMVVYSSAILDNHPLLSKARVLGVQCLQRAMFLALLMKDFRYS-----IAVTGTHGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S +  +  +            T SSF     +              +   G   + 
Sbjct: 115 TTTSSILATLLCKL----------DTTSSFVVGGVVKYADSN--------IQVNGTDRLV 156

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EA            +       TN+  DH+  ++     ++  +  F   L KES   I
Sbjct: 157 IEADESDAS---FLYLNPNVAIVTNIDLDHMSTYKNS---YDNLLENFANFLMKESIENI 210

Query: 247 Y--ADDAYSKEVMKRAHNAGC-RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           Y   DD    +++ +  +     ++S G+       +       N    T+  +  ++DF
Sbjct: 211 YLCVDDHGCNDLLDKYRSRVVGNIVSYGFAINSDARIYNYRVSDNLTTFTVEYKSGNYDF 270

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG++ V NA      C+ +G     +   L  +  V  RF+      +S    +  
Sbjct: 271 ELQLPGKYNVQNATACVVACLDLGFRYEDIYNALVTVKGVARRFDVYDKQISSHKIPVID 330

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +   L  +R    + +II VF            I    AL LAD  I+    
Sbjct: 331 DYGHHPVEVTSSLGAVRDKYPNKKIIHVFQPHRYTRNRDLLIDWPKALSLADQLIILPTY 390

Query: 420 PRSEDP--EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E         ++I  IP  +   +    +    ++++   V+++ G G 
Sbjct: 391 SAGEQIIQGAESQDLIRNIPKALLADSFDHVLYFLEKLVDDNTVVLIQGAGD 442


>gi|229061518|ref|ZP_04198862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
 gi|228717752|gb|EEL69402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
          Length = 450

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 136/397 (34%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A  +        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYSISA---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKYPVIAGNIGTVA---CEVAQLAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   +II 
Sbjct: 176 -----------VESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ETDYSIIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +        +        ++K        ++V    +         LP
Sbjct: 224 ADDADVMALSAYSKGKKVLFSATKIIEDGAYIKDNALYFKGEKVVKVSD-------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+ +  +   L+    V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++          AIVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYF---KHVKAIVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          +A+  A       DV+++
Sbjct: 386 VRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 422


>gi|254387287|ref|ZP_05002546.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
 gi|194346091|gb|EDX27057.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
          Length = 465

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 149/432 (34%), Gaps = 43/432 (9%)

Query: 53  KEDGHL-FIPQAIAQGAE---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           +  G    I  A A  A     +VVSSA    +      +   I VV  +   L+     
Sbjct: 52  RAHGATVHIGHAAAHLAADSTCVVVSSAIRSDNPELARAAELGIPVVHRS-DALAGLMDG 110

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L        +AV GT GK++  S +       G                 D        +
Sbjct: 111 L------RPIAVAGTHGKTTTTSMLAVSLSALG----------------LDPSYAIGGDL 148

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               + ++     +     + S     ++             N   DH   + + +  + 
Sbjct: 149 DAPGSNAHHGEGDIFVAEADESDRSFHKY-----TPQVAIILNAELDHHANYASMEEIYE 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHN 287
           +      +++P  +  + +     ++   + A N G RV++ G  +   + + K+     
Sbjct: 204 SFETFVAKVVPGGTLVVAHGQAGAAEIAARVAGNEGLRVVTYGEEEAADVRITKITPRGL 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +VT+ ++G+   F   +PG    +NA+ A    +A+GI +  +   L K   V  R +
Sbjct: 264 TSEVTVVIDGRMLTFTVSVPGRHYAHNAVAALAAGVALGIPAHNLASALGKYTGVKRRLQ 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKI 405
             G  + G ++   YAH    +   L+ IR       I+V        R Q     MG+ 
Sbjct: 324 LKGEAA-GVQVIDSYAHHPTEMSADLEAIRGAAGDSRILVVFQPHLFSRTQELGKEMGQA 382

Query: 406 ALDLADIAIVTDDNPRSEDP-EKIRAEII----HGIPGFIEKGNRIEAIRTAIE-MLNKQ 459
                    V D  P  EDP   I +EII          +   +  +A+   I  M    
Sbjct: 383 LALADAAL-VLDIYPAREDPIPGITSEIIIASARAAGADVTAEHEKDAVADVIAGMAKPG 441

Query: 460 DVLVVAGKGHET 471
           D+++  G G  T
Sbjct: 442 DLVLTMGAGDVT 453


>gi|28572689|ref|NP_789469.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27]
 gi|28410821|emb|CAD67207.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27]
          Length = 475

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 138/433 (31%), Gaps = 47/433 (10%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTP-ILVVDNTR-KFLSLFASRLYGKHPENI 117
             GA   V      L+      +S  I S+ P     +  R   L    +  +    + +
Sbjct: 57  QAGAIVKVGHDPAMLEGVDTFVYSGAIDSSNPEYAYAERARINLLHRSLALKWITRGKRL 116

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++ G+ GK+S  + +       G                        S +    A + L
Sbjct: 117 ISIAGSHGKTSTTAMIATALHVLGNKCGV----------------ANGSYMNFFSANALL 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +  +  + S      +             N+  DH+DY+ +Q A        F+  
Sbjct: 161 GLNDLFVIEADESDGSFLFY-----DTDISVVNNISMDHVDYYGSQSALE---GSFFDFS 212

Query: 238 LPKESPAIIYADDAYSKEVMKRA------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           L     A+I  DDA   ++  +            RV++ G               N  + 
Sbjct: 213 LRSSDAAVISLDDAACIKIASKLLQSSGSRGPSKRVITFGKNRSADVCLYEMGCMNPARF 272

Query: 292 TISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+S EG+ ++  F  L GE    N   A  + + +G   +  LE +        R E   
Sbjct: 273 TVSYEGRFYNAGFKGLFGEHHAVNTCAALSVLLCLGYGISESLEAILSFSGTRRRLELHF 332

Query: 351 TNS--RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIAL 407
            +    G +I+ DYAH    +   L  IR++   R+I +F      R          +  
Sbjct: 333 DSGGKDGIKIFDDYAHHPREIRTALTAIRSVQHTRLIALFQPHLYSRTAALHREFASVLE 392

Query: 408 DLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + AD  I+       E P      KI  +        +        +    + L   D++
Sbjct: 393 NCADFTIILPVYAARESPIPGVDAKIIFDAYRDKRNVVMLEGFDHTLSFFRQFLRDGDLV 452

Query: 463 VVAGKGHETVHIV 475
           +  G G     I+
Sbjct: 453 ITLGCGD-VYKII 464


>gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
 gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
          Length = 178

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 14/150 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            QW +  +  +  DSR I  G +FV + G   DGH FI  A+A G +A            
Sbjct: 36  QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANGCQAAFWGQDL----- 89

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC----- 137
                   P+L V +    +   A+    K   N++AVTG++GK++    +  +      
Sbjct: 90  -VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFV 148

Query: 138 --QRSGLSSFQIGPTSTISSFAQDNRLTTP 165
             +  G  + QIG   TI  F         
Sbjct: 149 TYKTQGNYNNQIGLPYTILLFYTCLMKQKN 178


>gi|218710689|ref|YP_002418310.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
 gi|218323708|emb|CAV20053.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
          Length = 452

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 126/363 (34%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G +   +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P         +D   ++V+ R         S G QG +   K V       Q  
Sbjct: 207 LV-RTVPGNGRIFSPKEDTAIQDVLSR--GCWSETESSGEQGDWDAKKLVKD---GSQFG 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L G+  V NAL+A      +G+   L  E L K      R EF G 
Sbjct: 261 VYFQGECVGTVDWDLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRRLEFKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
            + G  +Y D+AH   ++E+ L  +R  + + +II V         +G        +L  
Sbjct: 321 VA-GVSVYDDFAHHPTAIELTLGGLRNKVDTKKIIAVLEPRSATMKRGVHKETLADSLMQ 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     ++           + ++A +   +      D ++V 
Sbjct: 380 ADSTYLFQ-------PDNIDWSVQDVADACHQPAHVSDDMDAFVAKIVSEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|228922665|ref|ZP_04085965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837094|gb|EEM82435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 450

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 140/397 (35%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  +  ILV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNQILVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +      ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTMLTFEMLKEGQKHPVIAGNIGTVA---CEVAQDAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    +   +      + S   + +     K  A++ K +  + V          LP
Sbjct: 224 ADDADVMALSAYSKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    IV+   G DR      ++       A   IVT        P+ 
Sbjct: 335 -MLATEKALSAFTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A       DV+++
Sbjct: 386 VRAAEKAGLDIIESVDTLDEAVVKAYVHSKDGDVVLL 422


>gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl]
 gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl]
          Length = 816

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 150/474 (31%), Gaps = 65/474 (13%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             ELI                + S DSR   AG  F+A+   + DGH +IP A+A GA  
Sbjct: 5   LAELIEAGGTVIGPIHADTFTDWSYDSRLTVAGECFIALRTTRADGHDYIPAALAAGARG 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+ +                 ++V  + +  L  +AS    +    ++AVTG  GK+   
Sbjct: 65  ILCTR-------PPHDAGTATVVVCPDPQALLLRWASNRLQRLQPTVIAVTGGIGKTLAR 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +                +R    S + L  AL+ L       V   A 
Sbjct: 118 RAIAAVLATHAPT--------------FQSRRNFNSLLGLPIALARLERDHQYAVLEFAG 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H                 T    D                      L ++   +I    
Sbjct: 164 EH--LPPLAAAFPPRLAVVTAGTDD-----------------ATARFLARQGVTVI---- 200

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                    A       L+ G   G  I    +    +     +  +G +     PLPG 
Sbjct: 201 --------AAEGVSSAHLTFGTGSGCAIRATAISYRRDGVDCVVIGQGLELPITIPLPGP 252

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
             V  AL A  + +  G+  A + + L  L    GR   +   + G  I  D +  T  +
Sbjct: 253 PGVAAALAAVAVGLHYGVRPAAIRQALAGLDAPAGRLRPLP-GANGELILDDSFNATPEA 311

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   L+ +  I +GR I V G   +            +G  A   A+  ++      +  
Sbjct: 312 MRAALQTLAAIPTGRRIAVLGTPTELPAVDATPLLTELGMQAARSAEYLVLKGMGAATMA 371

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ-DVLVVA-GKGHETVHIVT 476
               +A  +      I   +  EAIR A+       DV++V+ G G     +V 
Sbjct: 372 ----QAARLANPTVTIHVVDTNEAIRAALPPSRNDQDVVLVSGGAGERLEQVVA 421


>gi|83648524|ref|YP_436959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
 gi|118595658|sp|Q2S9Z0|MURD_HAHCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83636567|gb|ABC32534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
          Length = 446

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 137/350 (39%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ILA+TG++GKS+V + V ++ +  G++    G   T                     L
Sbjct: 108 APILAITGSNGKSTVTTLVGEMAKACGVNVAVGGNLGT-------------------PVL 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L+ + V    VE SS  L+    D +  +A +  NL  DH+D +    AY  AK+R+F
Sbjct: 149 DLLADE-VELYVVELSSFQLE--TTDRLGALAATVLNLSEDHMDRYADMMAYHLAKLRVF 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++  DDA ++  + R        L     G++  L++             
Sbjct: 206 YGC----RRQVLNRDDALAQPPLSREAEITWFTLKTPEPGQYGVLEEKDGAWLAYGAEKL 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +  +         G+    NAL A  L  A G++    L+ L +   +  R E+V     
Sbjct: 262 LPVEQMRIR----GKHNWSNALAALALADAAGLEREPCLQALREFTGLTHRCEWVADKDG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A    + +  L  +  +TSG I+++   G  + Q   P+   +   ++ + I
Sbjct: 318 VAYINDSKATNVGATQAALAGLGPVTSGGIVLIC-GGQGKGQDFTPLAPAVKEWVSTLII 376

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +D P+         E + G    +      EA++ A E  +  D++++
Sbjct: 377 IGEDGPK-------LKEALAGGVMALSAETMEEAVKLAAEKSSPGDLVLL 419


>gi|238754435|ref|ZP_04615790.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
 gi|238707264|gb|EEP99626.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
          Length = 476

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 139/420 (33%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 64  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRYRHG------IAVAGTHGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 117 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGVH---ARLGSSRYL---IAEADESDASFL-- 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH++ +Q            F   LP    A++ 
Sbjct: 169 -------------HLQPMVAIVTNIEADHMETYQGDFENLKQTFINFLHNLPFYGRAVMC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   +E++ R       + + G+     + +     I  +   T+  + K        
Sbjct: 216 VDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQIGPQGHFTLRRQDKSLLTVTLN 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI- 358
            PG     NA  A  +    GID   +L  L        RF+F+G       N + G + 
Sbjct: 273 APGRHNALNAAAAVAVATEEGIDDEAILRALSSFQGTGRRFDFLGNFPLEKVNGKSGSVM 332

Query: 359 -YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DY H    +   +K  R      RI++VF                  L+  D+ ++ 
Sbjct: 333 LVDDYGHHPTEVSATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLEDVDVLLML 392

Query: 417 DDNPRSED--PEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D     E   P      +   I        I   +         ++LN  D+++V G G+
Sbjct: 393 DVYAAGETAIPGADSRSLCRTIRNRGQLDPILVSDSDSVPSVLAKVLNDNDLILVQGAGN 452


>gi|268318243|ref|YP_003291962.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
 gi|262335777|gb|ACY49574.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
          Length = 455

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 103/284 (36%), Gaps = 16/284 (5%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKE 241
             V +E SS  LD   +   +       N+  DH+D +      Y  +K R+F      E
Sbjct: 158 DVVVLEVSSFQLDH--VATFRPRVSVLLNITPDHLDRYNYNFNEYAQSKFRIFANQ-RGE 214

Query: 242 SPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              +   DD   +   +RAH     RVL    + +      V   +   ++    E    
Sbjct: 215 DVLVYNHDDELIRMAAERAHRKRGLRVLGFSQRTELPAGAFVRDGYLILRIEQQEEVLMH 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   +YN+L AA     + + + +V E L     VP R EFV        +  
Sbjct: 275 ANELALRGRHNLYNSLAAAVAARVMEVRNDVVRESLASFEGVPHRLEFVRELDGVRYVND 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   N++   L++         IV+   G D+      +   +   +  +  +     
Sbjct: 335 SKATNVNAVWYALESFS-----CPIVLIAGGRDKGNDYSVLKPLVKEKVRALVAI----- 384

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E  +K+  E+   +P  ++  +  EAI+ A       DV+++
Sbjct: 385 -GESADKLLRELGPLVPHAVKAQSMEEAIQYARVFAEPGDVVLL 427


>gi|317121201|ref|YP_004101204.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591181|gb|ADU50477.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 564

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 143/446 (32%), Gaps = 52/446 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKS 127
           ++    ++    +  ++ + P +     R   +           +    ++ VTG++GK+
Sbjct: 149 VLRERPFATVFLTPGMKKDLPEIRAA--RAAGAQIRGEIDLFLERCRAKVIGVTGSAGKT 206

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S + +  +R+      +              L         +AL          V +
Sbjct: 207 TTTSLIGEGLRRATAPGGPLEGRPVYVGGNIGRPLIEEVDRIPPEAL----------VVL 256

Query: 188 EASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+  HR          + NL  +H+D H + +AY  AK R+   L   E  A++
Sbjct: 257 ELSSFQLELCHR----APQVAVYLNLRPNHLDVHGSMEAYAAAKSRIVA-LQAAEGWAVL 311

Query: 247 YADDAYSKEVMKRAHNAGCRVLS-------VGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             DD     +  RA        +       +  Q        V A +   +     +G++
Sbjct: 312 NGDDPAPAGLAPRAPGRVAIFAASARVARQLAEQEAGRRGGPVRAAYLAGEHLAVWDGQE 371

Query: 300 FDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +       L G     NAL A       G     + E       V  R E V     
Sbjct: 372 ERCVLDGRAMVLRGAHNRLNALAAILAGWVAGAPPEAMAEAAAAFRGVEHRLELV-REVD 430

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G R Y D   T  + +  L  +   T     VV   GG         +G      A   +
Sbjct: 431 GVRYYNDSIAT--APDRTLAALEAFTE---PVVLIAGGYDKGIPFDPLGPAVCRRARAVV 485

Query: 415 VTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +       +    I+  I          P     G+  EA+  A  +    DV++++   
Sbjct: 486 LL-----GKTAGAIQRVIEEAAAREGRRPVVRRVGSLEEAVAEARRLARPGDVVLLS-PA 539

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
             +  +  +  ++     +++R  LG
Sbjct: 540 CASYDMFRDYVERGQRFKELVR-ALG 564


>gi|260893414|ref|YP_003239511.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
           KC4]
 gi|260865555|gb|ACX52661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
           KC4]
          Length = 457

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 144/427 (33%), Gaps = 51/427 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+S    L            I +V         FA          ++AVTGT+GK++  
Sbjct: 69  LVLSPGVPLTVPPVREAKEAGIEIVGELELAF-RFAR-------APVVAVTGTNGKTTTT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    I Q +GL ++  G                         LS +  +      +   
Sbjct: 121 ALTGAIFQAAGLRTWVAGNIGL--------------------PLSEVVEEARPEDILVVE 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       K +     NL  DH+D H    +Y  AK R+F     KE   ++  DD
Sbjct: 161 VSSFQLETTSTFKPVVAVILNLTPDHLDRHGDFNSYRQAKARIFARQTDKE-VTVLNYDD 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
               EV   A ++  RVL    + K      V     K ++ +  EG +          L
Sbjct: 220 P---EVRNMAADSCGRVLFFSRRHKLATGVWVA----KGEILVKWEGVEGKVTEVASLAL 272

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A    +A  +   ++   L +   V  R E V   +    +        
Sbjct: 273 PGAHNLENALAATAAAVAQNVPLEVIGRVLREFKGVAHRLELVAEINGVKYVNDSKGTNP 332

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L+          IV+   G ++    R +  K+   +  + ++ +  P      
Sbjct: 333 EATIKALEAYD-----CPIVLIAGGRNKGSDFRLLASKMKEKVKALVLIGESAPLLAAQA 387

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           K       G+   +   +  +A+R A E     DV++++     +  +  N E++     
Sbjct: 388 K-----AAGVSDIVLARDLPDAVRRAREKARPGDVVLLS-PACASWDMFRNYEERGECFR 441

Query: 487 DIIREIL 493
             ++E++
Sbjct: 442 QAVKELI 448


>gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
 gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
          Length = 435

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 147/378 (38%), Gaps = 46/378 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TGT+GKS+  + V++I + +       G                         LS
Sbjct: 94  KIIAITGTNGKSTTVALVERILKGASKRVIACGNYGL--------------------PLS 133

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +   +  VEASS+ L+   +D  K    +  N+  DH+ +H +   Y  AK ++F+
Sbjct: 134 EAIYENAEYYVVEASSYQLEF--IDKFKPNIAAILNIAFDHLSWHGSMDNYIEAKKKIFK 191

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L ++   I    D+Y  +       A   ++S   +      +K   I N+ +  + +
Sbjct: 192 NQL-EDDFFIKNDSDSYIFD-----GKANLFLVSKRDRNADCFFEKNGVIVNRPEY-LRI 244

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +         L G     N   AA + +  GI+   + E +  +  +  R EFV     G
Sbjct: 245 D------KTGLFGSKVFENIAFAALIGLLCGIEKKTIKEVVGTMSNLEHRIEFVD-EIDG 297

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            + Y D   T+  L+ +   I +   G  IV+   G  + +    ++  +    A   +V
Sbjct: 298 VKFYNDSKATN--LDAVEAAINSFDEGIKIVIILGGKHKGESYSRLL-PLLEKRARAVVV 354

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG--HETVH 473
                  ED + I  E+   +P  +   N   A+R A E+ +K DV++ +  G   E   
Sbjct: 355 -----YGEDRKVILNELDGFLPVPLPAVNIWGAVRAAFEVASKDDVVLFSPGGSSCEPYK 409

Query: 474 IVTNGEKKMSVDCDIIRE 491
                 +    + ++ ++
Sbjct: 410 NFEERGEAFKKEVEVFKK 427


>gi|91791720|ref|YP_561371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
 gi|91713722|gb|ABE53648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
          Length = 440

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 136/394 (34%), Gaps = 54/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+S   ++         +  I V+ +   F    A +        ++ +TG++GK++V 
Sbjct: 70  LVISPGIAIDTPEVRAAMDMGIEVIGDVELFARAIADK-----KPCVIGITGSNGKTTVT 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++   +GL     G   T +                      L +  V +  +E S
Sbjct: 125 TLVYEMLLAAGLKVAVGGNIGTPA--------------------LDLLAMDVDYYVLELS 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +  IA +  N+  DH+D +    AY NAK+RL+++        +   DD
Sbjct: 165 SFQLE--TTYSLNCIAATCLNISEDHMDRYSDLTAYRNAKLRLYDQ----SRFIMYNLDD 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +        N       +G             I++     I++          L G  
Sbjct: 219 ELTYPHEPMNQNH----FGLGVPDGDAWGLGDGKIYHGDSDIINL------IDVALIGSH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  A G++   ++   +    +  R E V        I    A    +  
Sbjct: 269 NHGNLLAAMALVHACGVEKEPMVTVAKTFSGLSHRCELVAVKQGVSYINDSKATNVGATV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+ + T      ++    G  +    RP+   ++     + ++T       D  K+  
Sbjct: 329 AALEGLSTHLGEVYLI--AGGDGKGADFRPLTQALSNV---VQLITL----GRDGHKLAK 379

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 PG IE     EA+  A EM    D++++
Sbjct: 380 L----KPGAIEVATMAEAVAKAAEMAYSGDIVLL 409


>gi|169827841|ref|YP_001697999.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
 gi|168992329|gb|ACA39869.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
          Length = 457

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 142/409 (34%), Gaps = 32/409 (7%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G   ++     +          NT +L V +  +    F     G     ++A+TGT G
Sbjct: 55  KGPSLVISDKPATELK---NALDNTTVLHVKSVAQAYWTFIEYYRGLFHIPVVALTGTCG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    ++ I  +           +++SS  +  +          K  + +   G+   
Sbjct: 112 KTTTKEMLKHIASK------HWQVQASVSSKNEPRQSLPYLTGVDDKTQAAIFELGL--- 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                + G  +H+    +   G  TN+G  H+D     + Y  AK  + E  +  +   I
Sbjct: 163 ----GNTGNIKHQCMIYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEG-IRADGTLI 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I ADDA  +++         +++  G Q         +   H   +  + V    ++   
Sbjct: 218 INADDANIEKI--SYQKFKGKIIKFGLQDSADYKASAIQFAHTGMKFVLEVADTKYNVFV 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  GE QVYNAL A   C  +G+     +  L     +    EF         I   + +
Sbjct: 276 PGYGEHQVYNALAAIAACSEMGLSIRQAIAGLRSFKQMARHLEFTTGLGDSTIIDDTWTN 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              S+E  LK + T+   + +++        G   ++  R I  K+A    D  I     
Sbjct: 336 NPTSVEAALKVLDTVGKEKKVILVLGDIKRLGNFEEKYHREIGSKVAERQIDTLITI--- 392

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAG 466
              +  E I  +              + I  +      L+   ++++ G
Sbjct: 393 --GKRAEAIADQAKKDGTKAEVHTFKDVIGVLEILKPKLDADTIVLIKG 439


>gi|77462655|ref|YP_352159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
 gi|122063256|sp|Q3J4M6|MURD_RHOS4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77387073|gb|ABA78258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 465

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 137/445 (30%), Gaps = 63/445 (14%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           G   +V S      Y   +          + V ++   F   FA+R +    +   ++ V
Sbjct: 66  GVALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+  + +  I   +G  +   G                         L    ++
Sbjct: 126 TGSNGKSTTTALIHHILSEAGRPTQMAGNIG-------------------RGVLDLDPAR 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 167 DGEVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---- 294
            +   +  D+     +  +        RV+ +    K                       
Sbjct: 225 RAVIGV--DEPEGLYLAGQLSVAPEDDRVIRISAGQKLERFGWSVFARKGFLAEWRKGRQ 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   D   +  LPG     NA  A   C  +G+    +   L     +P R + VG    
Sbjct: 283 MASIDLRAMPGLPGAHNHQNACAAYAACRTMGLAPRQIEAALASFAGLPHRSQTVGEKGG 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT------SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              +    A   +S    L+    I            +V          K  ++G  A D
Sbjct: 343 VRFVNDSKATNVDSAAKALQAFPKIRWIAGGLGKDGGIVALQPHLGSVVKAYLIGHSARD 402

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            A     TD         +I   +   +    E+                 +V+++A   
Sbjct: 403 FALQIGATD--------HEICETMERAVARAAEEA-------------QPGEVVLLA-PA 440

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
             +     N EK+     + ++ +L
Sbjct: 441 AASFDQYPNFEKRGEDFMEKVKALL 465


>gi|119717286|ref|YP_924251.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
 gi|166224710|sp|A1SL79|MURC_NOCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119537947|gb|ABL82564.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
          Length = 446

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 138/428 (32%), Gaps = 66/428 (15%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G +   GH     A     + +VVS+A    +          + V+  +    ++ A R 
Sbjct: 60  GARVHLGHD---AAHVHDVDTLVVSTAVREDNPEYVEAVRQGLRVLPRSAALAAVMAGR- 115

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++AV GT GK++  S +    Q +G         +     A            
Sbjct: 116 ------RVVAVAGTHGKTTTTSLLTVALQAAGADP----TYAIGGDLAATGVNAAEGTGD 165

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L  A +  S     H                     A   TN+  DH+D   T +AY  A
Sbjct: 166 LFVAEADESDGAFLHY-----------------SPYAAVVTNIEADHLDQWGTPEAYAAA 208

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F + L  +   +  ADD  +  + +R   AG RV++V  +                
Sbjct: 209 FDE-FADTLAPDGFLVCVADDPGAAALAERHRAAGRRVVTVSARDA----------GALD 257

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            VT+   G+ +                      + +G  +A +   L        R E  
Sbjct: 258 GVTLWSPGEHYLADALAAL-----------AAGVELGYAAADLARGLASYTGTKRRMERK 306

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALD 408
           G    G R+Y  YAH    +   L+  R +   GR++V F                 AL 
Sbjct: 307 GEAG-GVRVYDSYAHHPTEIAGDLQAARAVAGSGRVVVAFQPHLVSRTRIFGTAMGRALG 365

Query: 409 LADIAIVTDDNPRSEDPE-KIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQD 460
            AD  +V D     EDP+ ++   ++ G          ++   + + A    +      D
Sbjct: 366 AADEVVVLDVYLAREDPDPEVTGALVAGAVPLPAERVAYVADFDAVAA--ELVARARPGD 423

Query: 461 VLVVAGKG 468
           +++  G G
Sbjct: 424 LVLTLGAG 431


>gi|117924035|ref|YP_864652.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
 gi|117607791|gb|ABK43246.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
          Length = 466

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 132/373 (35%), Gaps = 39/373 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L G+HP   +  TGT GK++ +S + ++ + +G     +     I     D    +  P 
Sbjct: 101 LEGRHP---IVATGTHGKTTTSSMLARLWEEAGWEPGFL-----IGGIPADFGRGSRFPK 152

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   +  +G  + +          H     +       NL  DH D +   +A   
Sbjct: 153 GPW-----VVVEGDEYDTAFYDKRPKFLHY----RPRTLILNNLEFDHADIYADLEAI-R 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            + RL    +P+    +I  DD    EV K A  A   VL  G  G + +  ++      
Sbjct: 203 VQFRLLLRTVPRSGVVLINGDDE---EVTKLAEYACSPVLYYGIHGDYHYRARLNQKDGS 259

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               I  E + FD  +   G   +YN L AA   +  G+ + +V   LE    V  R + 
Sbjct: 260 HWTLIKEEQELFDVAWGQVGMHNIYNGLAAASAALEHGMPAHVVKAGLEGFSGVARRLQ- 318

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-- 406
           V     G  +Y D+AH   +++  L+ +R       I            ++    ++A  
Sbjct: 319 VRAQLGGVTLYDDFAHHPTAIKTTLEGLRAKVGQARIWAIIEPRSNTMRRKVHQSRLAGV 378

Query: 407 LDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEM 455
           L  AD  I      R ED           + +  EI      +      +E I +   E 
Sbjct: 379 LGRADRVIFV----RPEDKRLHSDELLNVDVVVGEINRAGLNWARVAENVENIVQMVGED 434

Query: 456 LNKQDVLVVAGKG 468
           L   D L+V   G
Sbjct: 435 LRPGDHLLVMSNG 447


>gi|270700814|ref|ZP_06223056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae HK1212]
 gi|270315852|gb|EFA27951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae HK1212]
          Length = 209

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 3/152 (1%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N P++      + LS  A   Y    +N+  + VTGT+GK++++  + Q  +  G  +  
Sbjct: 5   NVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAV 64

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +     + + TT S + +  +LS     G    S+E SSHGL QHR++ +   
Sbjct: 65  MGTIGNGLLGQIVEAKNTTGSAVEIQSSLSIFKHAGADFTSIEVSSHGLAQHRVEALHFK 124

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           A  FTNL RDH+DYHQ+ + Y  AK RLF EL
Sbjct: 125 AAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL 156


>gi|33151978|ref|NP_873331.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus ducreyi
           35000HP]
 gi|38372292|sp|Q7VMY1|MURC_HAEDU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33148200|gb|AAP95720.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus ducreyi 35000HP]
          Length = 475

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 83/427 (19%), Positives = 148/427 (34%), Gaps = 47/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + IA GA  +VVSSA    +   T   +  I V+    +   + A  +  +H  
Sbjct: 69  GHQ--AENIA-GASVVVVSSAIEENNPEITAAKSARIPVI----QRAQMLAEIMRFRHS- 120

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  + +  I   +GL    +      S+          +  YL   ++
Sbjct: 121 --IAVAGTHGKTTTTAMLSMIYTEAGLDPTFVNGGLVKSAG---KNAHLGASRYL---IA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D +             F 
Sbjct: 173 EADESDASFL---------------HLQPMLSVVTNIEPDHMDTYGGDFEQMKTIYVKFL 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293
             LP    A++ ADD     VM+ A   G +V+S G+     +  +             I
Sbjct: 218 RNLPFYGLAVMCADDDV---VMEIAPQVGRQVISYGFNANADYRIENYQQTGFQGHYTVI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  D +  +PG     NA  A  +    GI +  +L  L        RF+ +GT  
Sbjct: 275 CPNNERLDVVLNVPGHHNALNATAALAVAKEEGIANDAILAALADFQGAGRRFDPLGTFK 334

Query: 354 RG---GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           R      +  DY H    + + +K  R      RI+++F                  L  
Sbjct: 335 RPNGTVMLIDDYGHHPTEIAVTIKAARQGWQHKRIVMIFQPHRYSRTRDLFDDFVNVLSK 394

Query: 410 ADIAIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D+ I+ D     E      D + +   I + G    I   +  +      +++   D++
Sbjct: 395 VDVLIMLDVYAAGENAIVKADSKALCRSIRNLGKVDPILVSDTSQLGEVLDQIIQDNDLI 454

Query: 463 VVAGKGH 469
           +  G G+
Sbjct: 455 LAQGAGN 461


>gi|326803163|ref|YP_004320981.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650206|gb|AEA00389.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 452

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 128/410 (31%), Gaps = 62/410 (15%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +A+   D    +R+    L V     FL     +         +A+TG+ GK+S  
Sbjct: 67  VICGNAFK-DDHPEVVRAKELGLTVIRYHYFLGELIKKY------TSVAITGSHGKTSTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG   T             +  Y    L+Y              
Sbjct: 120 GLMSHVLGSLKTTSYLIG-DGTGKGVEDGEYFVLEADEYREHFLAY-------------- 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +     FTN+  DH D++   +  F A  +   ++  K    I Y DD
Sbjct: 165 ------------EPDYAIFTNIDFDHPDFYHNIEEVFAANRKFAHQVKNK---VIAYGDD 209

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
            Y +++          V   G          K +          + V+GK + +F     
Sbjct: 210 PYLQKLKDE-----VDVWYYGIDNDDFDIVAKDIVRNTKGSHFDVWVQGKHYGNFSIHTF 264

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N+L   G C   G D   V E L     V  RF           I  DYAH  +
Sbjct: 265 GQHSILNSLAVIGFCYLEGFDPEDVQEALTSFKGVKRRFNERFVEDM--VIVDDYAHHPS 322

Query: 368 SLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            ++  +   R       +I VF                 ALD +D A V D         
Sbjct: 323 EIKATIDAARQQYPDKAVISVFQPHTYSRTLALLDQFAEALDKSDAAFVCDIFAS----- 377

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIE-------MLNKQDVLVVAGKGH 469
               E  H      +  +R+     A++       +  K  V++  G G 
Sbjct: 378 --ARETDHHQVSSQDVLDRLTVPHAALDLGDMTSLLAYKDAVILFMGAGD 425


>gi|238893071|ref|YP_002917805.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044865|ref|ZP_06017908.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|238545387|dbj|BAH61738.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259037834|gb|EEW39062.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 491

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 140/419 (33%), Gaps = 52/419 (12%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+   S+ I ++ P +V  +  +        + A  +  +H    +A+ GT GK++ 
Sbjct: 77  RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTT 133

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V  I   +GL    +      ++        +         ++       + +    
Sbjct: 134 TAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAEADESDASFL---- 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                       ++ +    TN+  DH+D YH   +         F   LP    A++  
Sbjct: 184 -----------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVMCV 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           DD   +E++ R      ++ + G+     + ++    +  +    +  + K         
Sbjct: 232 DDPVIRELLPRVGR---QITTYGFSDDADVRVEDYRQVGAQGHFRLVRQDKAILQVTLNA 288

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--RI 358
           PG     NA  A  +    GID   +L  LE       RF+F+G       N + G   +
Sbjct: 289 PGRHNALNAAAAVAVATEEGIDDRAILRALESFQGTGRRFDFLGEFPLAEVNGKPGSAML 348

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    ++  +K  R       +++VF                  L   D  ++ D
Sbjct: 349 IDDYGHHPTEVDATIKAARAGWPDKNLVMVFQPHRYTRTRDLYDDFANVLTQVDALLMLD 408

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E P        +   I   G    I   +  +A      +L   D+++V G G+
Sbjct: 409 VYPAGEAPIPGADSRSLCRTIRGRGKVDPILVPDSAQAAEMLASVLTGNDLVLVQGAGN 467


>gi|296166019|ref|ZP_06848471.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295898640|gb|EFG78194.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 486

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 101/287 (35%), Gaps = 28/287 (9%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ +  AY       F E L      ++  DD  +  + +R    
Sbjct: 183 PNVAVVTNIETDHLDFYGSADAYV-GVFDAFVERLAPGGALVVCVDDPGAAALAERTAEL 241

Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE--GKDFD--FLFPLPGEFQVYNALVA 318
           G RVL  G   G       +       +    ++  G+         +PG     NAL A
Sbjct: 242 GIRVLRYGSGPGGDHAATLLSWEQQGTEAVAHIQLAGESHPRVMRLSVPGRHMALNALGA 301

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + IG     VL+ L     V  RFE VG N+   R++ DYAH    +   L  +RT
Sbjct: 302 LLAAVEIGASVDAVLDGLAGFEGVRRRFELVG-NAGSVRVFDDYAHHPTEISATLAAVRT 360

Query: 379 I----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +      GR +VVF         +   +   ALD AD   V D     E P       + 
Sbjct: 361 VLEQSGGGRSLVVFQPHLYSRTKEFAELFGRALDAADEVFVLDVYGAREQP-------LA 413

Query: 435 GIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHET 471
           G+ G     +    +R                   DV+V  G G  T
Sbjct: 414 GVSGASVAEHVSVPVRYLPNFSAVAEQVAAAAGPGDVIVTMGAGDVT 460


>gi|302877576|ref|YP_003846140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580365|gb|ADL54376.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
          Length = 463

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 93/443 (20%), Positives = 152/443 (34%), Gaps = 64/443 (14%)

Query: 36  DSRHIQAG-----------WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           DSR    G            +F    G   D        +  G E I +S    L D   
Sbjct: 36  DSRTTPPGLDQVAQFVPADQLFF---GAFTD-------TLFDGIELIAISPGVPLADPYI 85

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   I VV +   F        +   P  +LA+TG++GK++V S V+ +C+ +GL +
Sbjct: 86  ARAAARGIPVVGDIELFAQQL-RASHAPLPGKVLAITGSNGKTTVTSLVEHLCRAAGLDA 144

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G                 SP  L   L     Q      +E SS  L+  R   +  
Sbjct: 145 VAAGNI---------------SPAVLDVVLQRGDKQP-EVWVLELSSFQLETTR--SLTA 186

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A +  N+  DH+D +     Y  AK    +++L      ++  DDA S  +     +  
Sbjct: 187 DAATVLNVSEDHLDRYLGMDEYAAAK----QQILGGCRLQVLNRDDARSIAM----KHTT 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGL 321
              +S G                   + + V+G           L G   V NAL A  L
Sbjct: 239 SDCVSFGLNKPASE-SDFGIEREGDDIWL-VQGCSRLIKASEMQLAGLHNVANALAALAL 296

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C AI +   ++L  L     +P R E V     G   Y D   T+    +          
Sbjct: 297 CRAIDLPMPVLLAALRSFKGLPHRVEKVAV-LHGVTFYDDSKGTNVGATVAALAGL---- 351

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           G   V+   G  ++Q   P+   +      + ++  D P       I A +  G    I 
Sbjct: 352 GCPAVLIAGGVGKEQDFSPLKSAVTHHARAVVLIGRDAP------LIAAALAGGDVPLIH 405

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464
             +  +A++ A ++    D +++
Sbjct: 406 AADMQDAVQLAAKIAQYGDAVLL 428


>gi|259907415|ref|YP_002647771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963037|emb|CAX54520.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia pyrifoliae
           Ep1/96]
 gi|283477248|emb|CAY73160.1| murD [Erwinia pyrifoliae DSM 12163]
          Length = 438

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 152/400 (38%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    +   + ++ +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPSLMAAAQNGVEIIGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G    Q+G    I                   AL+ L  Q      +
Sbjct: 118 TVTTLVGEMAKAAGW---QVGTGGNIG----------------LPALTLL-QQPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH+D +    Q Y  AK+R++E      +  ++
Sbjct: 158 ELSSFQLETA--SSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYEN----ATVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +           + V+G+        
Sbjct: 212 NADDAMTMPV----RGADARCVSFGADVGDYHLTRQQGSTW-----LRVQGEKVLNTDEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L+ L   + +P RF+ V  ++    I    A 
Sbjct: 263 HLVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQRVHEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +    +G + ++   G  +     P+   +  D   I     D     +
Sbjct: 323 NVGSTEAALNGL--HPAGMLWLLL-GGDGKSADFSPLTRYLQGDRIRIYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+       ++     EA++     +   D++++
Sbjct: 377 LAALRPEVA------VQTETMAEAVQQIATQVQPGDLVLL 410


>gi|325479474|gb|EGC82570.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 464

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 124/404 (30%), Gaps = 38/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGKSSV 129
           +V + A    +       +    VV  TR  FL            +N +AV+G+ GKS+ 
Sbjct: 74  VVYTDAILDDNEELIAAKSVGCPVV--TRGVFLGALMRNY-----KNSIAVSGSHGKSTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I   S      I     +     + R+ +           YL ++   +     
Sbjct: 127 TSMISKILMHS-DVDATILLGGELDEMKGNVRVGSED---------YLVTEACEYKGNIR 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +                  N+  DH+DY++      N             S  I   +
Sbjct: 177 YYY-----------PQTLIVLNIDEDHLDYYKDLNDIVNTFKEYLSNQ-DANSLTITNLN 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPG 308
           +  +K +                   +  +        +    +   +G    F   + G
Sbjct: 225 EENNKLIFDSVKGRLITYAQENEDADYNAINIKFDEVGRPNFDLRFPDGSIEHFELGVIG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA+ +       GI    +  +L K   +  R + +G       I  DY H  + 
Sbjct: 285 RHNINNAMASIISTYENGIPVETIRTNLVKYTGLDRRMQIIGF-VDDATIMTDYGHHPSE 343

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DP- 425
           +++ L  +   T G++I V+                   D AD  IVTD     E  DP 
Sbjct: 344 IQVTLDALAEHTKGKLICVWQPHTYSRTKTLFNDFLNCFDSADEVIVTDIYAAREKFDPT 403

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              + +   +          G   +A     + + K D+++  G
Sbjct: 404 IHSKDVVDALTKKGINAKYIGEFEDARDYIYKDIEKNDLVLTTG 447


>gi|167043605|gb|ABZ08299.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 455

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 141/366 (38%), Gaps = 45/366 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS     H   I+A+TG++GK++    +  + +++G ++F  G       F+ D   T
Sbjct: 103 EVASWFCDAH---IIAITGSNGKTTTTELLGHLFRKAGRNTFVCGNVGR--PFSDDTDRT 157

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQT 222
            P  + +                +E SS  LD   +D  +       N+  DH+D Y+Q 
Sbjct: 158 GPDDLVV----------------LEVSSFQLDH--IDSFRPDVSILLNITPDHLDRYNQD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y  +K+R+ E     ++      D+  ++ V KRA       +S+  +       + 
Sbjct: 200 IDRYAASKLRICENQTGVDTFIFNQDDERIARFVRKRARGPIALGISITEE------IRA 253

Query: 283 CAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                   + + +  ++ + +      L G   V+N+L AA       + S +V E L  
Sbjct: 254 TGFLRNSDLMLRINDQEENLMPTEKLALRGRHNVFNSLAAAVAARVAEVRSDVVRESLRS 313

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              VP R E V        I    A   N+L   L++          VV   GG RD+G 
Sbjct: 314 FEGVPHRLEIVRDIDGVRYINDSKATNVNALWYALESFTE------PVVLIAGG-RDKGN 366

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                K  +     A++T      E  E I+AE+       +   +  EA+R A  +   
Sbjct: 367 DYSGLKSLVQTRVRALITI----GEAAEAIQAELGEFTADGVTTESLDEAVRLAHLLARP 422

Query: 459 QDVLVV 464
            DV+++
Sbjct: 423 GDVVLL 428


>gi|206578645|ref|YP_002240437.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288937137|ref|YP_003441196.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|290512560|ref|ZP_06551926.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
 gi|226706325|sp|B5Y1U6|MURC_KLEP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206567703|gb|ACI09479.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288891846|gb|ADC60164.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|289774901|gb|EFD82903.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 491

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 141/419 (33%), Gaps = 52/419 (12%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+   S+ I ++ P +V  +  +        + A  +  +H    +A+ GT GK++ 
Sbjct: 77  RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTT 133

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V  I   +GL    +      ++        +         ++       + +    
Sbjct: 134 TAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAEADESDASFL---- 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                       ++ +    TN+  DH+D YH   +         F   LP    A++  
Sbjct: 184 -----------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVMCV 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           DD   +E++ R      ++ + G+     + ++    +  +    +  + K+        
Sbjct: 232 DDPVIRELLPRVGR---QITTYGFSDDADVRVEDYRQLGAQGHFRLVRQDKEILQVTLNA 288

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--RI 358
           PG     NA  A  +    GID   +L  LE       RF+F+G       N + G   +
Sbjct: 289 PGRHNALNAAAAVAVATEEGIDDQAILRALESFQGTGRRFDFLGEFPLAEVNGKPGSAML 348

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    ++  +K  R       ++++F                  L   D  ++ D
Sbjct: 349 IDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLD 408

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E P        +   I   G    I   +  +A      +L   D+++V G G+
Sbjct: 409 VYPAGEAPIPGADSRSLCRTIRGRGKVDPILVSDPAQAAEMLASVLTGNDLVLVQGAGN 467


>gi|169831595|ref|YP_001717577.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638439|gb|ACA59945.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 449

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 142/426 (33%), Gaps = 51/426 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVVS    L            I V+          A          ++AVTGT+GK++  
Sbjct: 68  IVVSPGVPLDVPPVAEGRRLGIPVIGEL-----ELAWWFTRSP---VVAVTGTNGKTTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + + ++ +++G  +   G          +N                        +  E S
Sbjct: 120 ALLGELFRQAGRRTLVAGNIGVPLITEVENYGPQ------------------DVIVAEVS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+  R    +       NL  DH+D H T +AY  AK  +F      +    +  DD
Sbjct: 162 SFQLETTR--DFRPRVAVILNLTSDHLDRHGTMEAYIEAKAAIFANQQASDWTV-LNFDD 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPL 306
             ++ +  R       V+    Q    H  +        Q+     GK+          +
Sbjct: 219 PRTRALASRTR---AEVIFFSRQ----HKLEQGVFIQDGQIMARAGGKEAAVCPVRTLSI 271

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A      +GI  + +   L     VP R E VG       +    A   
Sbjct: 272 PGAHNVENALAATAAGWVLGIGPSALGRALTSFQGVPHRLETVGWVGGVEYVNDSKATNP 331

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++       IR + +    VV   GG           + A +   + ++  +       E
Sbjct: 332 DA------AIRALDAYAGPVVLIAGGRNKGNDFTAFMEKAREKVRVLVIIGEC----AAE 381

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
              A    G+   +   +   A++ A +     +V++++     +  +  N E++  +  
Sbjct: 382 MAAAAARAGLGEVLRAKDLPGAVQLARDAARPGEVVLLS-PACASWDMFRNYEERGDLFR 440

Query: 487 DIIREI 492
            ++RE+
Sbjct: 441 SLVREL 446


>gi|300869645|ref|YP_003784516.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
 gi|300687344|gb|ADK30015.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
          Length = 465

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 131/397 (32%), Gaps = 46/397 (11%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           K +             N ++VTGT GK++  + +  I      S  +      + +    
Sbjct: 110 KVIGEIEFAYNLIPDRNYISVTGTDGKTTTVNLIYSIIS----SYKKARLLGNVGNTFSK 165

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
              +      +   LS                       +D          N+  DH+D 
Sbjct: 166 EVESIEKDEDIVLELSSFQ-----------------LETVDNFHSHISVILNIAEDHLDR 208

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKF 276
           ++  + YFNAK  + +         I+  D++Y+      + +  +    VL+   + K 
Sbjct: 209 YKDIEDYFNAKKNITKNQ-NSNDFLILNYDNSYTNSYYNELIKTKDISFNVLTFSTKNKE 267

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +L             +   G+         L G   + N L +   CI   I    + +
Sbjct: 268 ANLYYNSEDEC-----LYYNGEKIFSIAKRKLLGMHNIENILASVLACIKDNIPIEYIDK 322

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +     +  R EFV     G R   D   T  S+  ++  +++      I++   G ++
Sbjct: 323 AVNNFKSIEHRLEFVK-EIDGVRYINDSKAT--SMSAVMSALKSFDKN--IILIMGGRNK 377

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
               +P+   I  +     I+T +   SED   +       +   I   +  EA   A +
Sbjct: 378 GIDFKPLK-SIIEERVKKLILTGE--ASEDLSSMID-----VSNKIIIKDFTEAFDYAKK 429

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +  K D ++++  G  +     N E++      ++  
Sbjct: 430 IAVKGDTVLLS-PGCASFDSFKNYEERGKYFKSLVNR 465


>gi|85711824|ref|ZP_01042880.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Idiomarina baltica OS145]
 gi|85694439|gb|EAQ32381.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Idiomarina baltica OS145]
          Length = 443

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 124/367 (33%), Gaps = 31/367 (8%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
                  + G+    +LAV+GT GK++ AS +  I Q +G     +     +      + 
Sbjct: 92  AQWLHDNVLGQ--RWVLAVSGTHGKTTTASMLTWILQANGYQPGFL--IGGVPGNFNVSA 147

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
               S  ++ +A  Y ++           S                   NL  DH D   
Sbjct: 148 ALGESDFFIIEADEYDTAFFDKRSKFVHYS------------PNTLVINNLEFDHADIFD 195

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T          L   ++P     II       ++V+ +       V+ VG   K  H   
Sbjct: 196 TLADIQKQFAHLL-RIVPGNGQVIIPDQVDAIEQVITK--GCWSDVVRVG---KDWHYHA 249

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             A        +  +  +     PL G   ++NA++A      +G+      E L     
Sbjct: 250 NSAD--ASLFNLRRDDNEVAVKLPLVGTHNMHNAVMAMIAAFHVGVLPQQAAEALATFKA 307

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              R E +    RG +++ D+AH   +++  +  ++   +GR++V+     +  +     
Sbjct: 308 PKRRLELL-LEYRGIKVFDDFAHHPTAIKTTVDALKKSETGRLVVLLEPRSNTMKSGVHK 366

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
                      +I          PE I  +I   +P     G+    ++ AI+ L   D 
Sbjct: 367 DALANALADADSI------NIFAPESIEWDIASAVPNARVFGDTEAMLQHAIDDLVPGDT 420

Query: 462 LVVAGKG 468
           +V+   G
Sbjct: 421 VVIMSNG 427


>gi|289640743|ref|ZP_06472914.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
 gi|289509319|gb|EFD30247.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
          Length = 482

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 137/419 (32%), Gaps = 45/419 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++VS A    +          + VV  +   L+       G      LAV GT GK+
Sbjct: 76  ARTLIVSQAIPDGNPEVEAARRRGLRVVSRS-AALAALMRGTRG------LAVAGTHGKT 128

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +  V    Q  G     +     I S   +      +              G   V+ 
Sbjct: 129 TTSLMVTVALQACGADPSFV-----IGSDINEAGSNAHAGT------------GEIFVAE 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S G        +       TN+  DH+DY+Q  +    A  R  + + P     +  
Sbjct: 172 ADESDGGFL----LLAPSGAIVTNVEADHLDYYQRPEDVEAAFARFVDGVDP-NGFVVAC 226

Query: 248 ADDAYSKEVMKRAHNAGC------RVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF 300
           ADD  +  ++              RV + G        ++            + V G+  
Sbjct: 227 ADDPGAALLVAALRERERDGGKAPRVTTYGESVDAHVRVELPMVSAAGSTCEVVVRGRRL 286

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    +PG   ++NA  A    + +G+ +A +LE L        RFE  GT   G R+ 
Sbjct: 287 GELSLRVPGRHNLHNAAGALAAGLELGLPAAGLLEGLAGFAGARRRFETKGTAG-GIRVI 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DYA+    +  +L+  R I  G  +VV F                 AL LAD  +V D 
Sbjct: 346 DDYANHPTKVVSVLRAARDIVDGGNVVVAFQPHLYSRTAAFAAEFGAALGLADAVVVMDV 405

Query: 419 NPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               E          + A++       + + +   A           D+++  G G  T
Sbjct: 406 FGAGEQQIPGVSGASVAAQVPLPAGRVVYEPSWSAAADQVAAFTRPGDLVLTVGAGDVT 464


>gi|85707764|ref|ZP_01038830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
 gi|85689298|gb|EAQ29301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
          Length = 460

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 145/406 (35%), Gaps = 64/406 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G + +VVS    L        +   + P++        + LFA       P  ++ +TGT
Sbjct: 64  GFDGVVVSPGVPLNTHPIAGHAAQFSVPVI------GDIELFARARADLLPHKVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + V  I Q +G+ S   G                  PI   + L+     G  
Sbjct: 118 NGKSTTVALVHHILQMAGIPSLLGGNIG--------------EPIMAQEPLAP-GEGGEG 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +     + TN+  DH+D +    AY  AK RLF+   P+   
Sbjct: 163 VYVLELSSYQIDL--TTSLDCEVAALTNITPDHLDRYDGFAAYAAAKERLFKMQSPRNLA 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                ++               R +    +G+      + A+ ++Q    S++G      
Sbjct: 221 VFGSLEEPVGA--------IYRRQIEFRGEGRAQ-AADLDALRDRQANWPSLQGP----- 266

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                   + N  VA  +   +G+  A     + +   +P R E V     G     D  
Sbjct: 267 ------HNLENVAVAVAIVEELGVTEAQWSHAIPRFRGLPHRMEIV-CEEEGVLFINDSK 319

Query: 364 HTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI---VTDD 418
            T+   S   +    R       I     G  ++ G    +GK A  L DIA+   V + 
Sbjct: 320 ATNTDASAPALAAYPRGEADRPRIHWIVGGLAKEDG----LGKCAEHLGDIAVAYTVGEA 375

Query: 419 NPRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            PR        AE++ G +P         EA+R A +     DV++
Sbjct: 376 GPRF-------AELLEGEVPKVERCELVSEAVRRAKDAAVAGDVVL 414


>gi|297538642|ref|YP_003674411.1| cyanophycin synthetase [Methylotenera sp. 301]
 gi|297257989|gb|ADI29834.1| cyanophycin synthetase [Methylotenera sp. 301]
          Length = 856

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 154/386 (39%), Gaps = 32/386 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +FA+   G+ P  ++ V GT+GK++    +  I    GL    +G T++   + +  R+ 
Sbjct: 461 MFAAGDDGRIP--LVTVAGTNGKTTTVRLISHILTCQGLR---VGMTNSDGVYIEGRRID 515

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHID--YH 220
           T        A + L    V    +E +  G+ +  L   +      TN+G  DH+   Y 
Sbjct: 516 TGDCSGPKSARNVLMHPDVDAAVLETARGGVLREGLAFDRCNVAVVTNIGMGDHLGLSYI 575

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--------AHNAGCRVLSV-- 270
            T +     K  + + + P +  A++ A D  +  +           A N    V++   
Sbjct: 576 TTVEDLAVVKRVVVQNVAP-DGMAVLNAADPMTANMAAACPGAVTFFAQNGQLPVIATHR 634

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +  + ++++    +  +Q     ++             FQV NA+ A     A+ ++  
Sbjct: 635 AHGHRVVYVEGGQIVAAQQNNEHRIDLAKIPVTRNGTIGFQVENAMAAIASAWALKVEWD 694

Query: 331 LVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ++L+ +          PGRF F     RG  +  DY H  +++  ++  I  I + + +V
Sbjct: 695 VILQGVSTFVNDAQTAPGRFNFF--EYRGASVIADYGHNPDAIVALVSAIENIPAKKRMV 752

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGF--IEKG 443
           V    GDR         +I  D  D  I+ +D   R     ++ A +  G+      +K 
Sbjct: 753 VISGAGDRRDIDISRQSEILGDAFDEVILYEDQCQRGRADGEVLALLRSGLANAKRTKKV 812

Query: 444 N--RIE--AIRTAIEMLNKQDVLVVA 465
           +  R E  AI  A+  L K D+ ++ 
Sbjct: 813 DEIRGEFVAIDAALSRLEKGDLCLIL 838


>gi|327441157|dbj|BAK17522.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Solibacillus
           silvestris StLB046]
          Length = 450

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 134/423 (31%), Gaps = 55/423 (13%)

Query: 54  EDGHLFIPQAIAQGAEAI-------VVSSAYSLQDFSATIRSNTPILVVDNTRKFLS--- 103
            D +    + +++G   I       ++   + L   +  I    P +V D   K L    
Sbjct: 43  FDANSEAQELLSKGITVICGRHPEDLLDEGFELVVKNPGIPYTNP-IVADAIAKGLPVIT 101

Query: 104 --LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
               A  +        + +TG++GK++  + + ++ +   L     G   T++       
Sbjct: 102 EIELAYLVSE---APFIGITGSNGKTTTTTLLFEMLKVGRLKPLIAGNIGTVACGV---- 154

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                            ++    +  E SS  L   R    +      TNL   H+DYH 
Sbjct: 155 --------------AAEAKADEVIVTELSSFQLMGTR--EFRPHIAILTNLYEAHLDYHG 198

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T + Y  AK          +   I  AD     +  +++        + G+  + I   K
Sbjct: 199 TFEEYAEAKFG-VTRNQTADDYFIYNADQEVVAKYAQKSKAKLIPFTTKGHANEGISADK 257

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                    +              LPGE  + N L A    +        + E L     
Sbjct: 258 ENIYWQGDAIL-------KRDNIVLPGEHNLENILCAVAAALLQQCPVEAIEEVLGTFAG 310

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R +FV    +G +IY D   T+                  IV+   G DR      +
Sbjct: 311 VRHRTQFV-REWQGRKIYNDSKATNVLATKSALAAFEQP----IVLLAGGLDRGHSFEEL 365

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             ++    A +    +   R  +  K       GI   +   +  +A+    +M  + D+
Sbjct: 366 RKEMTRVKA-VVAFGETALRFIEFAKSC-----GITNIVRAIDVEDAVGYGAKMSEEGDI 419

Query: 462 LVV 464
           +++
Sbjct: 420 ILL 422


>gi|321315285|ref|YP_004207572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis BSn5]
 gi|320021559|gb|ADV96545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis BSn5]
          Length = 451

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 124/351 (35%), Gaps = 39/351 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++  + + ++ +     +   G   T++S   +         ++   
Sbjct: 112 SAKFIGITGSNGKTTTTTLIYEMLKAGSQKALIAGNIGTVAS---EVAYHADGDEWIVTE 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS     G                     +       N+   H+DYH T++ Y  AK ++
Sbjct: 169 LSSFQLMGTHAF-----------------RPEISLILNVFDAHLDYHHTRENYEKAKQKV 211

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +      +  AI+  DD     + + A  A     SV    +     K   I    +  +
Sbjct: 212 YLHQTASDK-AIVNQDDETVVRLAE-AGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAIL 269

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +E         LPG   + N L A  +    G  +  V + L     V  R ++V T  
Sbjct: 270 PLE------EVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTT-V 322

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G + Y D   T+  +    K +        +++   G DR  G   +   +    A + 
Sbjct: 323 NGRKFYNDSKATN--ILATSKALSAFDKP--VILLAGGLDRGNGFDDLKPYMKHVKA-VL 377

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 378 TFGQTAPKLE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|258404872|ref|YP_003197614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797099|gb|ACV68036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 444

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 115/362 (31%), Gaps = 66/362 (18%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS    +    I+AVTG++GK++  + +  I + +G   F  G   T  S        
Sbjct: 105 ELASWFVNEP---IVAVTGSAGKTTTTTLIAHILETAGRRVFSGGNLGTPLSEYV----- 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        L+      + +E SS  L                N+  +H+DYH+  
Sbjct: 157 -------------LAQDQADVLVLEVSSFQLVHA--SSFHPKVAVLLNVAPNHLDYHEEM 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK++LF +  P +     YA                   L    + +        
Sbjct: 202 EAYVLAKLKLFAKQQPGDLAIAPYA-------------------LKEDLESRHFSAADRV 242

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 + +             LPGE    N   A   C  +G+D   V E L       
Sbjct: 243 YFVPNDRFS----------CPQLPGEHNQANIEAAYLACRYLGVDEQAVAEALASYQPQA 292

Query: 344 GRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            R + VGT   G ++  D   T+  SL+  L++          +V   GG    G   ++
Sbjct: 293 HRLQIVGTW-NGVKVVDDSKATTIESLQAALRSFEE------PIVLLAGGQFKGGDPSLV 345

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +        ++  DN        +      G+          +A+          DVL
Sbjct: 346 ADLIRTRVKEVVLFGDN------RDVFESAWQGLAPMRWFPTLEDAVDHGATTTQSGDVL 399

Query: 463 VV 464
           ++
Sbjct: 400 LL 401


>gi|224282642|ref|ZP_03645964.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313139800|ref|ZP_07801993.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132310|gb|EFR49927.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 529

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 128/451 (28%), Gaps = 76/451 (16%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V SSA    +          I +V  +     + A  + G+     + V G  G
Sbjct: 87  RGADTVVYSSAIKPDNPEIVAAHERGIRIVHRS----DILALLMNGR---RAVTVAGAHG 139

Query: 126 KSSVASFVQQICQRSG-----LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K++ +S +  I   +G       S+ IG T      A  +         L          
Sbjct: 140 KTTTSSLLSHILVHAGTGELADPSYAIGGTIQAPGGAVLDGGHAGRGDVLVAEADESDGS 199

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              +                  +      TN   DH+D++  +  Y  A     +     
Sbjct: 200 FCKY------------------RPSIAVITNALADHLDHYGDEAHYCAA---FIDHAGHA 238

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFI------------HLKKVCAIHN 287
               ++  DD  +  V++    +  R  +    +                  +   A   
Sbjct: 239 SGHVVMTGDDEGAVAVLRDLDPSVARRTIVYATKDADQIGDLRGATLVRIDAEHESADSG 298

Query: 288 KQQVTISVE------------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           ++  T+ V                      +PG     NA  A    + +G+      + 
Sbjct: 299 RETFTVHVPASLASVCGCGDADLALPVSLAIPGMHNARNATAAILAAMLLGVTPEAAAQA 358

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDR 394
                    RF+  G    G  +  DYAH    +  +L   R      +I V+F      
Sbjct: 359 ASTFLGASRRFQVRGEE-NGVTVVDDYAHHPTEISALLDAARRRYPRSVIRVLFQPHLFS 417

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRA----EIIHGIPGFIEKG---- 443
                      AL  AD  IVT   P  E   D   + A    +    +P    +G    
Sbjct: 418 RTRMFVHEFAEALSKADDVIVTGIFPARELQRDFPDVSAMTIVDAAQDVPHASAQGDGTW 477

Query: 444 -----NRIEAIRTAIEMLNKQDVLVVAGKGH 469
                +   A +         DV+   G G 
Sbjct: 478 ISAVDDMQVAAQMLAMRCRPTDVVFTVGAGD 508


>gi|94271504|ref|ZP_01291965.1| Cytoplasmic peptidoglycan synthetases-like [delta proteobacterium
           MLMS-1]
 gi|93450433|gb|EAT01623.1| Cytoplasmic peptidoglycan synthetases-like [delta proteobacterium
           MLMS-1]
          Length = 305

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 95/278 (34%), Gaps = 15/278 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  +    TN+  +H+D++   +A   A +  F   +P    AI+  DD     ++    
Sbjct: 14  LSPVLEIVTNIDHEHVDHYADLEAVKAAFLE-FINRIPFYGAAILCLDDDNVTALLPMIR 72

Query: 262 NAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAA 319
               RV++ G      I  +++       +  +    +        +PG   VYNAL A 
Sbjct: 73  K---RVITYGLSSQADIQAREITTRGFISRFEVWSRQQRLGKVSLAVPGRHNVYNALAAI 129

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L   + I  A +   L     V  R + V   S G  +  DY H    +   L  +R  
Sbjct: 130 ALGRELEIPFATIARALNNYSGVQRRLQ-VKGESDGITVIDDYGHHPTEIRATLAALRAA 188

Query: 380 TSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEII--- 433
              R +VV F                 A   AD+ I+ +     E   PE     +    
Sbjct: 189 WPRRRLVVLFQPHRYSRTAGLFQDFCTAFHDADLLILNNIYAAGEAEIPEVAGDALALAL 248

Query: 434 --HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             HG           +     +  L + DV++  G G+
Sbjct: 249 RRHGQREVSYVPELADLPTAVLGRLQRGDVVLTLGAGN 286


>gi|268316395|ref|YP_003290114.1| UDP-N-acetylmuramate [Rhodothermus marinus DSM 4252]
 gi|262333929|gb|ACY47726.1| UDP-N-acetylmuramate [Rhodothermus marinus DSM 4252]
          Length = 504

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 153/417 (36%), Gaps = 43/417 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A +     A       +       + L+ F   L  + P   + V GT GK++ A
Sbjct: 91  VVVGNACTPTHPEAAAARERRLPQCS-LPEALAHF--FLQYRQP---VVVAGTHGKTTTA 144

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +  R+GL          I +       + P              +G  + S    
Sbjct: 145 GLLAHVLDRAGLDPGFFIGGVMIGAETSGRVGSGPW----------FVVEGDEYDSAYFD 194

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H     +  A   T++  DH D +     Y  A  +L   LLP E   + + DD
Sbjct: 195 KRPKFLHY----RPEAVLLTSIEFDHADLYDDLDDYREAFEQLVA-LLPPEGLLVAHGDD 249

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              ++V   A +   +V + G      + + +V      Q  T+ V+G++   F  PL G
Sbjct: 250 PTVRQV---ARSCRAQVRTYGLHTLCDVTVGQVYPTFEGQHFTLIVDGRELGRFFLPLSG 306

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL      + IG+    + E L     +  R E  G    G  +  D+AH   +
Sbjct: 307 RHNLRNALAVCAFGLEIGLSPEQLREGLAGFPGMKRRLEVRGEAG-GVLVVDDFAHHPTA 365

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDD----NPRS 422
           +   L+  R      R++ +F    +  + KR     + A D AD   ++      N R 
Sbjct: 366 VRETLRAARQRWPDRRLVAIFEPRSNSSRRKRFEQAYMEAFDDADEVWLSMPPFRHNDRP 425

Query: 423 E---DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HE 470
           E   DPE + A I   GIP  + +G  +      +E L   D+ ++   G     HE
Sbjct: 426 EDFFDPESVAAGIRARGIPAHVAEGADVLL-PLLLEALRPGDIALIMSNGAFGNLHE 481


>gi|257452943|ref|ZP_05618242.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|317059484|ref|ZP_07923969.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|313685160|gb|EFS21995.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_5R]
          Length = 447

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 126/361 (34%), Gaps = 40/361 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S +  +      +    G    I S   + ++           ++  
Sbjct: 104 IAVAGTHGKTTTSSMMSAVMLSLDPTIVVGGILPEIGS---NAKVGMGEYF-----IAEA 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                + + +               K      TN+  DH++ H   +    +  +  E+ 
Sbjct: 156 DESDNSFLFM---------------KPKYAVVTNIEEDHLETHGNLENIEKSFRQFVEQ- 199

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              E   ++  D A  + V   +     ++++ G      I  K V  ++ K    + ++
Sbjct: 200 --TERKVLVCTDCANVRTVFSESE----KIMTYGMDYEANIMAKNVEIVNGKTSFEVLIQ 253

Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSR 354
           G+    F   +PG+  + N+L      +  G+    + + L        R++ +      
Sbjct: 254 GESQGRFYISIPGKHNILNSLPVIYFSLLFGVPKEEIQDKLLHFRGSKRRYDVLYWDQEN 313

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +I  DYAH    ++  LK +++I  G+II +F                   +  D  I
Sbjct: 314 NRKIIDDYAHHPTEIQATLKGVKSIEKGKIIGIFQPHRYSRVHFLLERFAHCFEGLDELI 373

Query: 415 VTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468
           +       E       EK  A+II  IP      ++   +   +E   + + + +  G G
Sbjct: 374 LLPIYSAGEQNESGVSEKDIAKIIPTIP-VTCIESKERVVERIMEETREDNHIFIFMGAG 432

Query: 469 H 469
            
Sbjct: 433 D 433


>gi|260772145|ref|ZP_05881062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
 gi|260613012|gb|EEX38214.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
          Length = 466

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 111/359 (30%), Gaps = 27/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  I ++ G     +     + +F  D        ++   
Sbjct: 114 QDRWVLAVAGTHGKTTTASMLTWILEQCGYQPGFL-VGGVLGNF--DLSARLGESMFFVV 170

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                 S      S     H                  NL  DH D     +A       
Sbjct: 171 EADEYDSAFFDKRSKFVHYH-----------PRTLILNNLEFDHADIFDDLEAIKRQFHH 219

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    LP          D+   +V+ R          +G QG++   K         Q  
Sbjct: 220 LI-RTLPGNGRVFAPQQDSALADVLSR--GCWSEREFIGQQGQWQAKK---HNPQGSQFA 273

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + +   D  + L G+  V NAL+A      +G+   L  + L        R E  G 
Sbjct: 274 VYFQDQRVGDVEWSLIGDHNVNNALMAIAAARHVGVTPDLACQALASFINTKRRLEQKGQ 333

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ L  +R       I+                G +A     
Sbjct: 334 E-NGVTVYDDFAHHPTAIELTLSGLRNKVGSEKIIAVVEPRSATMKLGVHKGTLAASFAQ 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   N  +   +++  +            + +E I  A         ++V   G
Sbjct: 393 ADSVYLFQPNELAWSVDEVAQQCSSPAYVSNNIDDLVERICAA---AKPGTHILVMSNG 448


>gi|94495050|ref|ZP_01301631.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
 gi|94425316|gb|EAT10336.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
          Length = 1025

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 138/412 (33%), Gaps = 51/412 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVD---NTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  I+ S+  +  D      +  P+L V    +    L  +A  +       ++ VTG++
Sbjct: 621 ARGIITSAPQAFAD------AELPVLSVRNNGDAVLALGRYARSMMR---GKLIGVTGSA 671

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+++ + + Q  +          P   + +   +  L       LA       +    H
Sbjct: 672 GKTTMVAMLAQALR----------PWGKVGTSRLNANLPHGIGWNLASI-----AWDTPH 716

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E +   + Q+     +     FTN+   H+++H         K  +FE  +   + A
Sbjct: 717 VVMELAIGRMKQN-AALARPDVAVFTNIAAAHLEFHHDLATVARRKSAIFEG-MAAGATA 774

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+ AD A    V   A      ++S G   +               +          +  
Sbjct: 775 ILNADMAELARVRALAMARELNIVSYG---EAPQADIRLISRKGNFLEAETPSGRMGYHL 831

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---D 361
             PG     N+L       A+ +     +  LE    + GR +      +G RI +    
Sbjct: 832 ATPGRHMAVNSLAVLATLHALSLQPHRGMTALEDFRPLAGRGDVAALCVQGKRILLIDEA 891

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-----VT 416
           Y     S+   L+ +     GR + + G   +   G       +A     ++I     V 
Sbjct: 892 YNANPASMAAALELLGAQAGGRRVAILGEMLELGPGAEGYHADLAPLATGLSIDVVHAVG 951

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI--EMLNKQDVLVVAG 466
               R        A++     G I   +   A   A+  E++   D+++V G
Sbjct: 952 PLYARF------CADLPPRHRG-IHAPDL--ATLHALWPELIRDGDIVLVKG 994


>gi|312984120|ref|ZP_07791467.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           CTV-05]
 gi|310894474|gb|EFQ43549.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           CTV-05]
          Length = 437

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 112/363 (30%), Gaps = 48/363 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                + V+GT GK+S  S +  +      +S+ IG                        
Sbjct: 105 QSHTSIGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGRGKG------------------ 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                 S+   + + E   H L  H            TN+  DH DY + Q  Y +A   
Sbjct: 147 ---VAGSRFFVYEADEYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQADYTSAFQS 197

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQV 291
             ++    +    ++ DD   + +            + G+         ++       + 
Sbjct: 198 AADQ---TKKALFVWGDDKRLQSL-----KTDIPKYTYGFNDTDDFQATQIEKSTTGSKF 249

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   GKD  +F   L G+  + NA     +     +    + + L        RF    
Sbjct: 250 HVLAHGKDLGEFEIHLFGDHSILNATAVVAVAYTEKVPMEDIKKGLPSFKGAKRRFS--E 307

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     +  DYAH    +   ++  R      +++VVF         K     +  L  
Sbjct: 308 KDFGDIAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRD 367

Query: 410 ADIAIVTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAG 466
            D A VT       E    I   +++  IPG      + I  +       NK  V+V  G
Sbjct: 368 VDKAYVTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTK-----NKNSVIVFMG 422

Query: 467 KGH 469
            G 
Sbjct: 423 AGD 425


>gi|320527377|ref|ZP_08028559.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
 gi|320132234|gb|EFW24782.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
          Length = 523

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 115/353 (32%), Gaps = 24/353 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            + +TG+ GK+S  + +Q +          IG                   I +   L  
Sbjct: 180 KIGITGSYGKTSTKNVMQAM----------IGEQFNTLMTPASYNTPMGITITIRTLLK- 228

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                V    + A   G   + +  ++   G  T++G  H+    +Q+     KM++ E 
Sbjct: 229 -PIHKVFVCEMGADHVGEITNLMKFVQPSIGVVTSIGPQHLATFGSQENIIKEKMQMME- 286

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTIS 294
           LLPK+   ++  D+ + +    +      + +S G + +    +   +         T+ 
Sbjct: 287 LLPKDGLGVLNYDNDFIRNYRLK---NLVKTVSYGVKSRDVDYYADDITYTRMGSSFTVV 343

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +       L GE  + N L A  +   + +    +    + +  V  R E    N  
Sbjct: 344 HRDEHVRIETKLLGELNILNILSAICVARHLNVPWPTIQRAAKTMKQVEHRLELKTIN-- 401

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLAD 411
           G R   D  +++     +   + ++      VV     D            G+     AD
Sbjct: 402 GYRFIDDAFNSNPVGSAMALEVLSMMPNTRYVVTPGMIDLGAIQDDANKEFGRKMKGKAD 461

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I+  +   ++   +   E+   +   I      EA       +   D +++
Sbjct: 462 EVILVGEIQ-TKSIYEGLQEVGFDMNRVIVVKTVKEAFDHIYRHVLPSDTILL 513


>gi|325982970|ref|YP_004295372.1| UDP-N-acetylmuramate [Nitrosomonas sp. AL212]
 gi|325532489|gb|ADZ27210.1| UDP-N-acetylmuramate [Nitrosomonas sp. AL212]
          Length = 464

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 114/358 (31%), Gaps = 17/358 (4%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAK 172
             +LAV GT GK++ +S +  I   +GL+   +  G        A+   + +  P     
Sbjct: 103 RWVLAVAGTHGKTTTSSMLAWILDYAGLNPGFLIGGIPENFGLSARIGIIRSEHPQDSES 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +S   V       ++    + +            N+  DH D      A    +  
Sbjct: 163 NSAEISPFFVIEADEYDTAFFDKRSKFVHYHPRTAILNNIEYDHADIFPDLSAIKR-QFH 221

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F  ++P     I    D   K V+  A      +   G +  +          +     
Sbjct: 222 HFVRIIPNNGLIIANGKDENIKHVL--AQGCWTPLEEFGTETDWNAQLLANNAIDIYFDQ 279

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I          + L GE    NAL A       G+     +  L +   V  R E  GT 
Sbjct: 280 IH----QGCLHWDLLGEHNRMNALAALIAARHAGVPVETGIAALSEFKSVKRRMEKRGT- 334

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLA 410
             G  +Y D+AH   +++  L  +RT    + I+                  +A  L  A
Sbjct: 335 VNGVTVYDDFAHHPTAIQTTLNGLRTHVGQKRIIAVLEPRSNTMKMGVWKDYLAHSLQEA 394

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D          + D +  ++ +           +  + I+  + +   +D +++   G
Sbjct: 395 DHVFC-----FTRDSQWAKSTLRTLNNRVDYCDDLNQLIQNIVAITKPEDHVLIMSNG 447


>gi|226358157|ref|YP_002787896.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319800|gb|ACO47794.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 917

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 137/384 (35%), Gaps = 40/384 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GKS+ +  V  I Q+SG     +G T++   +    ++ +        A  
Sbjct: 504 PIISITGTNGKSTTSRMVAHILQQSGKV---VGLTTSNGIYIGGEQVVSGDTTGPKSAKV 560

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            LS   V    +E +  G+ +  L       G+  N+  DH+      T +     K  L
Sbjct: 561 VLSDPSVEVAVLETARGGILREGLGFATCDVGAVLNIQPDHLGLKGIETIEDLAWVKS-L 619

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             E++ +   +++ ADD  + ++ ++A          G  G     +    I       +
Sbjct: 620 IVEVVSRNGASVLNADDPLTLKMRRKARGEIILFSMCG--GGAYSAELKEHIGGGGTAIV 677

Query: 294 S--------------------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                                +  +D         +  V NAL AA + +A  +   ++ 
Sbjct: 678 REPTVLGDELVLYQDDRRQPIMRARDIPATLGGFAQVNVQNALAAAAIAVAQQVPLQMIR 737

Query: 334 EHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFG 389
             L                 +    R+ +DYAH    +E + + I  +    GR+I V G
Sbjct: 738 SALSSFSTSFELSPGRLNLYDGHPFRVLLDYAHNPTGMEHLRELIGHLRPPKGRVIGVMG 797

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI-------PGFIE 441
             GDR       MG++A    D+ IV +D   R     +    I  G             
Sbjct: 798 VAGDRRDEDIVRMGELAAQAFDVLIVREDELRRGRAVGEGARLIEEGALRGGLDSAHMQT 857

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVA 465
             +   A+  A+ +    D++V+ 
Sbjct: 858 ILDEPSAVDAALRLAVPGDLVVLL 881


>gi|212692807|ref|ZP_03300935.1| hypothetical protein BACDOR_02306 [Bacteroides dorei DSM 17855]
 gi|212664596|gb|EEB25168.1| hypothetical protein BACDOR_02306 [Bacteroides dorei DSM 17855]
          Length = 458

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 145/421 (34%), Gaps = 51/421 (12%)

Query: 60  IPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           I  A    A   +V + A        T        +   + + L +        H    L
Sbjct: 63  ITDAFRNPATTLVVYTPAVPDTHKEFTYFRENGFEIHKRS-QVLGML------THAGKGL 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT GK++ ++    +  +S      +G  + +   +++               + L 
Sbjct: 116 CVAGTHGKTTTSTMTAHLLHQS-----HVGCNAFLGGISKNYGT------------NLLL 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S    ++ +EA       H L          T    DH+D + T++AY  +  R +  L+
Sbjct: 159 SDSSEYMVIEADEFDRSFHWLS---PYISVITATDPDHLDIYGTKEAYLES-FRKYTSLI 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEG 297
                 I+          ++ A   G ++ +   +    H + +   + +     +S  G
Sbjct: 215 QPGGALIVRKGIE-----LQPALQNGVKLYTYSKEEGDFHAENIHIGNGEIFFDYVSPLG 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    +P    + N + A  L    G+    +   +     V  RF+F   N +   
Sbjct: 270 NIPNIQLGVPVSINIENGVAAMALAQMSGLTDEEIKRGMASFRGVDRRFDFKIKNDK-VV 328

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DYAH  + ++  + ++R      ++  +F                 +L L D  I+ 
Sbjct: 329 FLSDYAHHPSEIKQSILSMRALYRDKKLTAIFQPHLYTRTRDFYKDFADSLSLLDEVILV 388

Query: 417 DDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LVV-AGKG 468
           D  P  E P      + I   +  GI   + K    E I   +++L+K+D+ +++  G G
Sbjct: 389 DIYPAREQPIPGVTSKLIYDHLRPGIEKSMCK---KEEI---LDVLSKKDIEVLITLGAG 442

Query: 469 H 469
            
Sbjct: 443 D 443


>gi|332968967|gb|EGK08011.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella kingae
           ATCC 23330]
          Length = 443

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 149/371 (40%), Gaps = 46/371 (12%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           VV +     ++ A  L G+ P+ I+A+TG++GK++  S V  +CQ+SGL +   G   T 
Sbjct: 92  VVGDV----AILADLLRGQ-PDKIIAITGSNGKTTTTSLVGHLCQQSGLDTVIAGNIGTP 146

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
              A   R   P                     +E SS  L+    D +   A +  N+ 
Sbjct: 147 VLEAWLERRGKP----------------ADVWVLELSSFQLE--TTDCLNATAATCLNIS 188

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH+D +     Y +AK R+F      ++  ++ ADD + + + +         L+   Q
Sbjct: 189 EDHLDRYDDLLDYAHAKDRIFHG----DTVQVLNADDVFCRAMKRDHRTVHYFSLT---Q 241

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
            +  HL    A    +Q  +  +        PL G     N L A  LC +IG++   +L
Sbjct: 242 SQDYHLDAATAQLKHRQDNLLPQN-----AIPLQGSHNAANVLAALALCESIGMERETLL 296

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            H++    +P R E VG   + G +++D +  +N +   +  I  +     ++    G  
Sbjct: 297 CHVQTFKGLPHRVEKVGE--KNGVVFIDDSKGTN-VGATVAAIAGLREKIWLI--AGGMG 351

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           + Q   P+   +      + ++  D P      +I  ++       I      +A++ A 
Sbjct: 352 KGQNFTPLRDVLQGKAGAVFLIGVDAP------QIAQDLDGCGVDLIFCDTLPQAVQQAF 405

Query: 454 EMLNKQDVLVV 464
                 +++++
Sbjct: 406 SAAKSGEIVLL 416


>gi|261823015|ref|YP_003261121.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium wasabiae
           WPP163]
 gi|261607028|gb|ACX89514.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium wasabiae
           WPP163]
          Length = 486

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 144/421 (34%), Gaps = 51/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVTSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   +E++ R       +++ G+     + +        +   T+  + K   +    
Sbjct: 231 VDDEVIRELLPRVGR---HIITYGFSDDADVRIAGYRQTGAQGHFTLERKDKPLLNVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR-- 357
            PG     NA  A  +    GID   +L  LE+      RF+F+G       N   G   
Sbjct: 288 APGRHNALNAAAAVAVATDEGIDDESILRALERFQGTGRRFDFLGEYPLELVNGHSGTAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      R++++F                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLML 407

Query: 417 DDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKG 468
           D     E P        +   I   G    I   + ++ +   +    +  D+++V G G
Sbjct: 408 DVYSAGESPIPGADSRSLCRTIRGRGKIDPILVTD-VDTLPELLSQALRGEDLILVQGAG 466

Query: 469 H 469
           +
Sbjct: 467 N 467


>gi|302382172|ref|YP_003817995.1| Mur ligase middle domain protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192800|gb|ADL00372.1| Mur ligase middle domain protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 469

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 121/366 (33%), Gaps = 41/366 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GTSGKS++   +  I Q++G             +      +   +      A + +
Sbjct: 111 VGVAGTSGKSTITGMIAWILQQAGRDP----------TVMNGAVMRNFADADHPFASALV 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S  +    V+ S   + ++            +N+  DH    ++ +   +    LF   
Sbjct: 161 GSPDLFVAEVDESDGSIARY-----DPSVAVVSNISLDH----KSMEELRD----LFGGF 207

Query: 238 LPKESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   A++  D+  +  + +              ++G     +    +  +       +
Sbjct: 208 TGRAQTAVLNLDNPETAALAQGLVDDGRGEAVLTFALGNDAADLSAHDLVPLPTGMTFAL 267

Query: 294 S--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +    G        +PG   V NAL A G   A+G+     +  LE    +  R E VG 
Sbjct: 268 TERAGGARIAATLNVPGAHNVANALAALGAVRALGVPLDQAVASLETFAGIRRRMEVVGA 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR----------DQGKRPI 401
            + G  +  D+AH  + +   +K +     GR++++F   G            D     +
Sbjct: 328 -ANGVTVIDDFAHNPDKIAATVKTLHAF-DGRLLILFQPHGFGPLKLMKAEFIDTFAGLL 385

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
                L + +         RS   E I A +           +R       I++    D 
Sbjct: 386 RPDDVLLMPEPVYYGGTTDRSVGSEDIAAGVRAAGRTAEALSDRAACGDRLIDLARPGDR 445

Query: 462 LVVAGK 467
           ++V G 
Sbjct: 446 IIVMGA 451


>gi|289750755|ref|ZP_06510133.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T92]
 gi|289758279|ref|ZP_06517657.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T85]
 gi|289691342|gb|EFD58771.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T92]
 gi|289713843|gb|EFD77855.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T85]
          Length = 120

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 63/107 (58%), Gaps = 7/107 (6%)

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF------ 439
           +VFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G          
Sbjct: 1   MVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQV 60

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 61  VEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 106


>gi|229083523|ref|ZP_04215861.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus
           Rock3-44]
 gi|228699777|gb|EEL52424.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus
           Rock3-44]
          Length = 335

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 112/314 (35%), Gaps = 23/314 (7%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS   +  +  + +  SS G  +      +  A   TN+G  H+    ++ A   AK+ +
Sbjct: 29  LSLEENTEMAVLEMGMSSLGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEI 88

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
              L  +     +Y  D           N     ++ G  +    +   V          
Sbjct: 89  VTGL--QNGGVFVYNGDEPLLTNRVPNMNLAAETITFGDARANDYYPTSVTLQATGTYFK 146

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ + KD  F  P+ G+  VYN L +  +    G+    + + L  L +   R E V TN
Sbjct: 147 MN-QDKDTVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTN 205

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG----DRDQGKRPIMGKIALD 408
           +    I   Y  +  ++E     +  +      VV         D++      +GK+   
Sbjct: 206 NGLTVINDAYNASPTAMEAAFHLMNGLDGFAKKVVVLGDMLELGDQEVQFHYEVGKLIDP 265

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVL 462
                + T          ++ A+I  G              N+ E ++    +++++DV+
Sbjct: 266 AKISYVFT--------YGRLGAQIAEGAKINFPKERVKVYDNKEELVKELQTVIDEKDVV 317

Query: 463 VV-AGKGHETVHIV 475
           +V A +G +   I+
Sbjct: 318 LVKASRGMKLEEII 331


>gi|239813924|ref|YP_002942834.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
 gi|239800501|gb|ACS17568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
          Length = 707

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 168/466 (36%), Gaps = 65/466 (13%)

Query: 56  GHLFIPQAIAQGAEAI--VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           G  ++P A  + AE +  +   + +    +A    +TP L     +           G  
Sbjct: 256 GQPYVPTAAREAAEFVAKIAELSATNPASAAVEEEDTPQL-----KLVPIEEPPAPRGYT 310

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  +LAVTGT+GK++V +   Q+ +R+G S    G    I     D          L   
Sbjct: 311 PA-VLAVTGTNGKTTVTALTGQLVERAGKSVAVAG---NIGPTLLDTLAAHIDAETLP-- 364

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +E SS  LD   + G +  A +  NL +DH+D+H   QAY +AK R+
Sbjct: 365 ---------DVWVLELSSFQLD--GVQGFEPTAATVLNLTQDHLDWHGDMQAYASAKARI 413

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCR------VLSVGYQ-------------- 273
           F      +   ++  DD     ++        +       ++ G                
Sbjct: 414 F----GTQGLMVLNRDDPGVMAMLPAPVKVKLQRPQVRAHVTFGASMPLRPGDYGIERVN 469

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------GEFQVYNALVAAGLCIAIG 326
           G    ++ + A   +++   +V  ++      LP       G     NAL A  L  A G
Sbjct: 470 GMAWLVRALEADETQKRKRGAVVEEEIFLQRLLPADVLRIRGRHNAMNALAALALASAAG 529

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                +L  L +    P R E +         Y D +  +N +   +  +  +   R +V
Sbjct: 530 CPLGPMLYGLREYRGEPHRVEPIAIVDEVE--YFDDSKGTN-VGATVAALNGLGEDRRVV 586

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           V   G  + Q   P+   +A     + ++  D P       I   +       +  G+  
Sbjct: 587 VILGGEGKGQDFEPLAAPVAQYARAVVLIGRDAP------LIEQALAATGASLMHAGSMQ 640

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           EA++ A    N  D ++++     +  +  + E + +V  + ++ +
Sbjct: 641 EAVKLAAARANPGDAVLLS-PACASFDMFKDYEHRAAVFREAVQAL 685


>gi|317478445|ref|ZP_07937606.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_1_36]
 gi|316905404|gb|EFV27197.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_1_36]
          Length = 461

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 127/382 (33%), Gaps = 42/382 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S      +G  + +   +++              
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLLHQS-----HVGCIAFLGGISKNYGT----------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L S    +  +EA       H L          T    DH+D + T++AY  +  R 
Sbjct: 155 -NLLLSATSPYTVIEADEFDRSFHWLS---PWMSVITATDPDHLDIYGTKEAYLES-FRH 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +  L+      I++       +V       G    +        H + +   + +  +  
Sbjct: 210 YTTLIQPGGALILHKGLEMQADV-----QPGVATYTYSRNEGDFHAENIRIGNGEIFIDF 264

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    +P    + N + A  L    G     + + +     V  RF+F   N
Sbjct: 265 VAPDTRINDIQLGVPVSINIENGVAAMALAHLSGATDEEIKQGMASFRGVDRRFDFKLKN 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLAD 411
            R      DYAH    +   +K++R +   + I V+F                 +L L+D
Sbjct: 325 DR-IVFLSDYAHHPAEIAQSVKSVRELYQDKKITVIFQPHLYTRTRDFYRDFADSLSLSD 383

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+T+  P  E P      + I   +  GI   I    R E + + +      +VLVV 
Sbjct: 384 EVILTEIYPAREQPIPGVTSQLIYDNLRPGIEKCIC---RKEDVLSLLAQ-KHTEVLVVL 439

Query: 466 GKGH-ETV--HIVTNGEKKMSV 484
           G G  +     I     +K   
Sbjct: 440 GAGDLDNYAPQITQLLSEKYHG 461


>gi|154498031|ref|ZP_02036409.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
 gi|150273021|gb|EDN00178.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
          Length = 461

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 140/390 (35%), Gaps = 54/390 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I+AVTG+ GK++  + + ++ +++G + +  G          +     P  + +   
Sbjct: 115 PCEIIAVTGSDGKTTTTTIISELLKKAGYNVYVGGNIG--KPLLAETPNMEPDDMVV--- 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +E SS  L       +       TN+  +H+D H++ + Y  AK  +
Sbjct: 170 -------------LELSSFQLMTM---DMSPDIAVVTNVAPNHLDVHKSMEEYVEAKENI 213

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH-NAGC----RVLSVGYQGKFIHLKKVCAIHNK 288
           F     +   A+   D+  +++  K+A  N  C     +L  G   K   +       ++
Sbjct: 214 FAHQSTEN-LAVFNWDNEITRDFSKKAPGNVMCFSRREMLERGIYVKDDAIWCADRDGHR 272

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + + +S           LPG   V N + A      + +    +         V  R E 
Sbjct: 273 KVLLLS--------DILLPGNHNVENYMAAIAAVNGL-VSDETIRLFARSFGGVEHRIEL 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T   G R Y D   +S +     + I  + S    V+   GG        ++G   ++
Sbjct: 324 VRT-VDGVRYYNDSIASSPT-----RTIAGLRSFEEKVILIAGGYDKHIPFDVLGPEIIE 377

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                I+T D       EKIRA + +        P      +  +A+  A  M    DV+
Sbjct: 378 HVKELILTGD-----TAEKIRAAVENAPGYNGSNPPIRMYQDFEQAVLAAHSMAQPGDVV 432

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            +      +     N  ++ +    I+RE+
Sbjct: 433 -ILSPACASFDRFKNFMERGNAFKRIVREL 461


>gi|91792018|ref|YP_561669.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
 gi|91714020|gb|ABE53946.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
          Length = 464

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 120/367 (32%), Gaps = 34/367 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I + SG     +     I    Q+  ++         
Sbjct: 105 PGRWVLAVSGTHGKTSTSSMLAWILEYSGYEPGFL-----IGGVPQNFGVS--------- 150

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L +     V  +         R   +  +       NL  DH D      A    +
Sbjct: 151 --ARLGNSNFFVVEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLTAIQR-Q 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIH 286
                  +P +   I  A+    ++V++    +     S G       K +         
Sbjct: 208 FNHVIRTVPGQGKIIWPANSEAVQQVIEMGCWSEQETYSAGVHDFNTEKTLGWHAKTLSA 267

Query: 287 NKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +  +  +  +G     + + L G+  V NA++A      +G+  A  +  L +      R
Sbjct: 268 DAHEFEVYFDGHSQGVMSWNLIGQHNVENAVMAIAAARHVGVVPAQAMAALSEFSPPKRR 327

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E +GT   G  ++ D+AH   +++  L+ +R       I V          +      +
Sbjct: 328 LELLGTIG-GVAVFDDFAHHPTAIDSTLQGLRAKVGNGKITVVLEPRSNTMKQGVHKDTL 386

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDV 461
           A      ++V  D       + I  ++   +         K +  + I          D 
Sbjct: 387 A-----HSLVRADQAYLYQADSISWDLKSSMQTASIPVSVKTDIEQIIDALCHDAKAGDT 441

Query: 462 LVVAGKG 468
           +V+   G
Sbjct: 442 IVIMSNG 448


>gi|300811426|ref|ZP_07091921.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497584|gb|EFK32611.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 439

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 115/358 (32%), Gaps = 47/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G+ GK+S    +  +   +  +SF IG    +    +D+R                
Sbjct: 109 IGVAGSHGKTSTTGLLATVLGEAAPTSFLIGD--GMGKGVKDSRFFVYEAD--------- 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + +  Y +A     ++ 
Sbjct: 158 ----------EYRRHFLAYH------PDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD      +++      +  + G           V       +  +   
Sbjct: 201 --TKKGLFVWGDDER----LQKIQPKTAKKYTYGLKDSDDFQAFDVVKTTEGAKFHVRAN 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+D  +F   L G+  V NA     +    GID  +V + L K      RF     +   
Sbjct: 255 GEDLGEFSIHLFGDHNVMNATAVIAIAFTEGIDLDVVRKGLVKYTGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    L   ++  R      +++ +F         +        L   D A 
Sbjct: 313 TVVIDDYAHHPTELRATIQAARQKFPDRKLVTIFQPHTYSRTKEFEEEYVEILKGVDKAF 372

Query: 415 VTDDN-PRSEDPEKIR-AEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T       E    I+  +I   IPG      + ++ +     +  K D +V  G G 
Sbjct: 373 LTPIYGSAREAAGDIKSEDITSQIPGAEVIDFDNLKDL-----LAYKGDCIVFMGAGD 425


>gi|193301875|gb|ABV90250.2| sporulation protein A [Bacillus subtilis subsp. sadata]
          Length = 458

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 124/351 (35%), Gaps = 39/351 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++  + + ++ +     +   G   T++S   +         ++   
Sbjct: 112 SAKFIGITGSNGKTTTTTLIYEMLKAGSQKALIAGNIGTVAS---EVAYHADGDEWIVTE 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS     G                     +       N+   H+DYH T++ Y  AK ++
Sbjct: 169 LSSFQLMGTHAF-----------------RPEISLILNVFDAHLDYHHTRENYEKAKQKV 211

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +      +  AI+  DD     + + A  A     SV    +     K   I    +  +
Sbjct: 212 YLHQTASDK-AIVNQDDETVVRLAE-AGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAIL 269

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +E         LPG   + N L A  +    G  +  V + L     V  R ++V T  
Sbjct: 270 PLE------EVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTT-V 322

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G + Y D   T+  +    K +        +++   G DR  G   +   +    A + 
Sbjct: 323 NGRKFYNDSKATN--ILATSKALSAFDKP--VILLAGGLDRGNGFDDLKPYMKHVKA-VL 377

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 378 TFGQTAPKLE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|327404198|ref|YP_004345036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
 gi|327319706|gb|AEA44198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
          Length = 447

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 125/353 (35%), Gaps = 41/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++    +  + +++GL     G                          
Sbjct: 106 AKKVCITGSNGKTTTTMLIHHMLKKAGLKVGLAGNVG-------------------YSFA 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             ++ +      +E SS  LD   ++  K      TN+  DH+D ++   Q Y N+K R+
Sbjct: 147 KQVALEDNEIYVLELSSFQLDD--MEDFKAEIAILTNITPDHLDRYEYNMQLYVNSKFRI 204

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                  +       D     E+ KR+ +A      L+  ++       K   I+   Q 
Sbjct: 205 LNNQTAGDYFIYNADDKTILAELEKRSISAQKLPFSLTQEFEQGAYTANKQLIINFNNQF 264

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+S+          L G+    N+L +      + I   +V E L     V  R EFV  
Sbjct: 265 TMSIH------ELALKGKHNTQNSLASGLAGRILDIRKDIVRESLSDFVNVEHRLEFV-A 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G     D   T+  +      + ++    I +V   G D+      ++  +   +  
Sbjct: 318 KVCGIEFINDSKATN--INSTWFALESMEQPTIWIV--GGVDKGNDYSELVELVKEKVKA 373

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I  +  DN      +KI       +   +E G+ +EA+     +  K + +++
Sbjct: 374 IICLGKDN------QKIIDTFSGHVETIVEAGSAMEAVAYGYRLAKKDETVLL 420


>gi|298525652|ref|ZP_07013061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298495446|gb|EFI30740.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 94_M4241A]
          Length = 223

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 3/206 (1%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +   L+ +  +GV  V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF A
Sbjct: 1   MQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEA 60

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  LF+      +   +   D  +   M         V +      +            Q
Sbjct: 61  KASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQ 120

Query: 290 QVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q T I   G        LPG + V N LVA  +   +G+     +  L ++  VPGR E 
Sbjct: 121 QFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQ 179

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILK 374
           +    +G    VDYAH   S  +   
Sbjct: 180 ID-RGQGFLALVDYAHKPESAAVGAD 204


>gi|81428361|ref|YP_395361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|122063248|sp|Q38XM9|MURD_LACSS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78610003|emb|CAI55051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 454

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 142/419 (33%), Gaps = 56/419 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----- 114
           + +  A GA  I  S   +L +         P +  DN      + A  +  + P     
Sbjct: 49  VAELRALGATVITGSHPVALFEEGFHYLFKNPGIRYDNP-----MVAEAIKREIPVLTEP 103

Query: 115 --------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                    + ++VTG++GK++  + +  +      +         I     +      +
Sbjct: 104 ELAYEVSEADWVSVTGSNGKTTTTTLIALMLNYQ-RAQGHAYAAGNIGIPLSEVAQKATA 162

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              +   LS     G T                  +K      TN+   H+DYH T++ Y
Sbjct: 163 KDTMVTELSSFQLMGTT-----------------TVKPKVAVLTNIYEAHLDYHGTRENY 205

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AKMR+ +         ++  D    + + ++          +G   +  ++K      
Sbjct: 206 VQAKMRIVQNQT-ASDYFVVNWDLPELRTLSQQTKAQVVPFSRLGTSEEGAYVKDGQLCF 264

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             + +    +         +PG+  V NAL A      +G  +  ++E L     V  R 
Sbjct: 265 KGEVIMPVTD-------INVPGDHNVENALAALAAAKLMGQSNEAIIEVLTTFTGVKHRM 317

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +FV   + G R Y D   T+  +E     +++    + IV+   G DR     P+   + 
Sbjct: 318 QFVKEFA-GRRFYNDSKATN--MEATEVALKSF--KQPIVLIAGGLDRGFTFEPLTDLLK 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-IEAIRTAIEMLNKQDVLVV 464
             +  I +        E  + +           IE  ++  EA+  A     + DV+++
Sbjct: 373 AHVKAIILY------GETKQLLAQTAKEAGIETIEIVDQLTEAVPAAYAASQEGDVILL 425


>gi|239994437|ref|ZP_04714961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii ATCC 27126]
          Length = 510

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 140/426 (32%), Gaps = 61/426 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V+S   +L      +     + V+ +   F  L AS       + ++ +TG++GK
Sbjct: 76  GVDTLVLSPGLALDIEQVALAQKCGVEVIGDVELFARLNASTSDATPAKRVVGITGSNGK 135

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V   V  + +  G+ S + G                       + +          V 
Sbjct: 136 TTVTLLVNHLLKNCGVKSIEAGNVG--------------------RPVLEALQSDADVVV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKES 242
           +E SS  L+      + L A +  N+  DH+D H T +AY +AK R+F+     ++ ++ 
Sbjct: 176 MELSSFQLE--TTSSLVLEAATVLNISDDHLDRHGTLEAYIDAKHRIFDNAKSAVVWRDG 233

Query: 243 ----------------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--------GKFIH 278
                            A     D  S         A   ++  G            F  
Sbjct: 234 EFVAPYEQLITDAKGIAASNAVSDGESNAASNEESLASKNIVEYGLGESTTGFAIASFDG 293

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                       +T   E         L G   V N + A G+C+ +G+  AL ++HL  
Sbjct: 294 DDSARDDEQSLYITFKDEKLIALSDIHLAGMHNVLNIMAALGICLQLGVSPALAVKHLRS 353

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R   +   +    I    A    +    L+ +     G++I++   G  +    
Sbjct: 354 FKAAPHRCVEIARVNDIRYIDDSKATNIGATVAALEGLAPTIQGKLILI-AGGDAKGADI 412

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             +   +   ++ +  +  D    E                       +A++ A  +   
Sbjct: 413 ASLSPYLTKYVSHVFALGKDAHLFE----------KSFAHTTRVATMKDAVKAATRLAAP 462

Query: 459 QDVLVV 464
            DV+++
Sbjct: 463 GDVVLL 468


>gi|309802501|ref|ZP_07696607.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308220901|gb|EFO77207.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 289

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 118/293 (40%), Gaps = 23/293 (7%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + YF  K RL           ++ AD  +   +M+ A +AG +V           L
Sbjct: 1   HPTFEDYFRCKRRLIAN----SRSLVLGADCDHRDLLMQDAADAGIKVTEFALHDAARGL 56

Query: 280 K------KVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                        NK    +SV G D       + GEF V NA  A  + I  G+  +  
Sbjct: 57  TSPAQVIARVDPENKAGFIVSVNGSDLRPMELDMSGEFNVTNAAAAVAIAIEAGVPESDP 116

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI---RTITSGRIIVVFG 389
                    VPGR E V     G  +Y+D+AH   S++ ++  +         RI +V G
Sbjct: 117 SIAAMCRVQVPGRMERVKA-GDGLLVYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVSG 175

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----R 445
             G +   +R  + K AL   +  I T D+P  EDP  I  ++   +     +      R
Sbjct: 176 TTGGKAVDRREGIVKGALGRVESFIFTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVPR 235

Query: 446 IEAIRTAI----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             AI  AI    E  ++ ++++V GKG ET +I+         D  ++R +LG
Sbjct: 236 ELAIEKAIADAREHADRFNIVLVIGKGDETRNIINGKPVPYEGDGAVVRRVLG 288


>gi|15902647|ref|NP_358197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae R6]
 gi|116515762|ref|YP_816097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae D39]
 gi|30316022|sp|Q8DQM2|MURD_STRR6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122279017|sp|Q04LK1|MURD_STRP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15458185|gb|AAK99407.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae R6]
 gi|116076338|gb|ABJ54058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae D39]
          Length = 450

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 150/425 (35%), Gaps = 48/425 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPENILAVTGTSGKS 127
           ++   ++L   +  I  N P++     ++   L     A  +       I+ +TG++GK+
Sbjct: 68  LLDEEFALMVKNPGIPYNNPMIEKALAKRIPVLTEVELAYLISE---APIIGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + + ++   +G      G    I   A            L   LS     GV     
Sbjct: 125 TTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKDTLVMELSSFQLMGVQEF-- 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TNL   HIDYH +   Y  AK  + +  +      ++ 
Sbjct: 180 ---------------HPEIAVITNLMPTHIDYHGSFSEYVAAKWNI-QNKMTAADFLVLN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +   +K++  +         +   +       +   ++ + +V ++           +P
Sbjct: 224 FNQDLAKDLTSKTEATVVPFST--LEKVDGAYLEDGQLYFRGEVVMAAN------EIGVP 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL    +     +D+  + E L     V  R +FV  + +G + Y D   T+ 
Sbjct: 276 GSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVD-DIKGVKFYNDSKSTN- 333

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +        +V+   G DR      ++  I   L  + I+       +  E+
Sbjct: 334 -ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVIL------GQSAER 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           ++         ++E  +  +A R A E+  + DV++++   + +  +  N E +  +  D
Sbjct: 385 VKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDMYANFEVRGDLFID 443

Query: 488 IIREI 492
            + E+
Sbjct: 444 TVAEL 448


>gi|299142302|ref|ZP_07035435.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris C735]
 gi|298576391|gb|EFI48264.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris C735]
          Length = 459

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 130/361 (36%), Gaps = 41/361 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ ++    I  +S +          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHMDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSDSSDYVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II+ D       MK+    G +V     +    H + +   + +         
Sbjct: 214 IQPGGALIIHRDLE-----MKQHVQEGVKVYDYSREAGDFHAENIVIDNGEISFDFVSPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++  +     P    + NA+ A  +    G  +  +   +     V  RF+F   N +  
Sbjct: 269 ENVKNIKLGQPVPINIENAVAAMAMAQLNGCTAEELRYGMRTYAGVDRRFDFKIKNDKH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DY H    +    ++++ +  GR I V+F                 AL   D  ++
Sbjct: 328 VFLSDYGHHPKEVLQSARSLKELFKGRKITVIFQPHLYTRTRDFYHEFADALSNFDEVVL 387

Query: 416 TDDNPRSEDPEK------IRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T+  P  E+P +      I   +  G+    I K + ++ ++         DVLVV G G
Sbjct: 388 TEIYPAREEPIEGVTSKLIFDNLKPGVEKTIIRKDDVLDYVK-----SRDFDVLVVLGAG 442

Query: 469 H 469
           +
Sbjct: 443 N 443


>gi|152968676|ref|YP_001333785.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|330012006|ref|ZP_08307223.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
 gi|166224697|sp|A6T4N4|MURC_KLEP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150953525|gb|ABR75555.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328533995|gb|EGF60647.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
          Length = 491

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 140/419 (33%), Gaps = 52/419 (12%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+   S+ I ++ P +V  +  +        + A  +  +H    +A+ GT GK++ 
Sbjct: 77  RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTT 133

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V  I   +GL    +      ++        +         ++       + +    
Sbjct: 134 TAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAEADESDASFL---- 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                       ++ +    TN+  DH+D YH   +         F   LP    A++  
Sbjct: 184 -----------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVMCV 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           DD   +E++ R      ++ + G+     + ++    +  +    +  + K         
Sbjct: 232 DDPVIRELLPRVGR---QITTYGFSDDADVRVEDYRQVGAQGHFRLVRQDKAILQVTLNA 288

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--RI 358
           PG     NA  A  +    GID   +L  LE       RF+F+G       N + G   +
Sbjct: 289 PGRHNALNAAAAVAVATEEGIDDRAILRALESFQGTGRRFDFLGEFPLAEVNGKPGSAML 348

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    ++  +K  R       +++VF                  L   D  ++ D
Sbjct: 349 IDDYGHHPTEVDATIKAARAGWPDKNLVMVFQPHRYTRTRDLYDDFANVLTQVDALLMLD 408

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E P        +   I   G    I   +  +A      +L   D+++V G G+
Sbjct: 409 VYPAGEAPIPGADSRSLCRTIRGRGKVDPILVPDSTQAAEMLASVLTGNDLVLVQGAGN 467


>gi|260910909|ref|ZP_05917551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634966|gb|EEX53014.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 443

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 115/319 (36%), Gaps = 38/319 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G   + +G    I          
Sbjct: 94  EFAGRYTD---AKMVCITGSNGKTTTTSLIYHIFKTAG---YNVGLGGNIG--------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEA--SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   ++L+   ++G     V    S    D +R    K       N+  DH+D + 
Sbjct: 139 --------RSLALQVAEGAHDWYVIELSSFQLEDMYR---FKAHIAVLLNITPDHLDRYN 187

Query: 222 -TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
              Q Y +AKMR+ + L P++       D     E+ K   +A     +   +       
Sbjct: 188 YRMQGYVDAKMRILQNLTPQDYFIYWGDDPVVKPELQKYDVSAHVCPFAENSETGMSAYV 247

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +     +  ++          LPG+  +YN+L AA    A GI  ++V + L    
Sbjct: 248 ADGQVTLPAPLDFTMP----QDRLSLPGKHNLYNSLAAALAARAAGIPQSVVEQGLSDFP 303

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R E V T      I    A   ++    L+ + T T     ++   G D+     P
Sbjct: 304 GVEHRMERVATMHGVNYINDSKATNVDACRYALEAMNTPT-----ILIIGGKDKGNDYEP 358

Query: 401 IMGKIALDLADIAIVTDDN 419
           I   +    A +  +  DN
Sbjct: 359 IKELVKEKCAGLVYLGADN 377


>gi|254507374|ref|ZP_05119509.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
 gi|219549630|gb|EED26620.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
          Length = 453

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 117/363 (32%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEACGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P          D    +V++R         S G QG +   K V          
Sbjct: 207 LV-RTVPGNGRIFAPKQDKALADVLER--GCWSETESSGEQGDWQAEKVVND---GSHFK 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G    +  + L G+  V NAL+A      +G+   L  + L K      R E  G 
Sbjct: 261 VFFQGNQVGEVRWSLVGDHNVDNALMAIAAARHVGVTPDLACDALGKFINTKRRLECKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
            + G  +Y D+AH   ++E+ L  +R     R I+            G        +L  
Sbjct: 321 IA-GVTVYDDFAHHPTAIELTLGGLRNKVGPRRILAVLEPRSATMKRGVHKETLAASLRA 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     ++             ++A +   +      D ++V 
Sbjct: 380 ADSVFLYQ-------PDSIDWSVEDVAQQCTQPAWTSKDVDALVEMIVAEAQTGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|54295453|ref|YP_127868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Lens]
 gi|62900487|sp|Q5WTI5|MURD_LEGPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53755285|emb|CAH16779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Lens]
          Length = 447

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 141/385 (36%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           S  +  +TP+L  ++ R+  +L       L  +    ++A+TGT+GKS+V + V ++ + 
Sbjct: 72  SPGLALDTPVL--ESARQAGALIYGDIECLAREISAPVIAITGTNGKSTVTTLVGEMAKA 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G      G   T      D+                          +E SS  LD    
Sbjct: 130 AGFRVAVAGNIGTPVLDMLDDEHHY------------------DLWVLELSSFQLDL--T 169

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +  +  +  N+  DH+D H T +AY  AK R++          +   +D Y+  V  +
Sbjct: 170 YSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYRG----AKAVLFNREDVYT--VPHQ 223

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +  A  + +S G     +    +    N   +   +E         + G     NAL A 
Sbjct: 224 SCQADIKCISFGKDAPSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAAC 283

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A GI    +L  L+    +P R ++V      G I         +    +  I   
Sbjct: 284 ALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVGWINDSKGTNIGATISAINGIGGS 343

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G  IV+   G  +    + +   ++  +  I ++       ED +KI + +   +P  
Sbjct: 344 MQG-KIVLIAGGQGKGADFQELAQPVSEFVRSIVLI------GEDADKIESALAKVVP-V 395

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +   A+  A       DV+++
Sbjct: 396 VRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|42524582|ref|NP_969962.1| hypothetical protein Bd3200 [Bdellovibrio bacteriovorus HD100]
 gi|62900538|sp|Q6MIF8|MURD_BDEBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39576791|emb|CAE80955.1| murD [Bdellovibrio bacteriovorus HD100]
          Length = 462

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 149/386 (38%), Gaps = 39/386 (10%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G   E I+ +TGT+GK++VA   + I   SG+ ++  G                      
Sbjct: 109 GFIKEPIIGLTGTNGKTTVAKITEAILTESGVKTWVGGAN-------------------- 148

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            K L            V A          D        FTNL  +H+D +++ + Y NAK
Sbjct: 149 EKPLVDYLRLDDKAQVVIAEVSSFMLEHCDTFNPGNIVFTNLAENHLDRYRSMEEYVNAK 208

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIH 286
            R+F+    + + +I+ ADD    E+ +       R+         + + +++     I 
Sbjct: 209 RRIFKN-TNQATTSILNADDNAVVELARDPAVQRGRIFYFSRKPALEPQIMNIGGAVNIG 267

Query: 287 NKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           ++ +V    E + F+     + G+  V N + A       G     V + +     +P R
Sbjct: 268 DEIRVRTGPEIESFNIKGMKMRGKHSVENIMAAILASREHGATREAVQKVINTFTGLPHR 327

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E+V     GG ++ + +  +N +  +L+ + T      +++   G D +    P+   +
Sbjct: 328 IEYV--RKVGGVMFYNDSKATN-VHAVLRALDTFDEN--VILIAGGKDTNLNYEPLRTSV 382

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              +  + +V       E  E+I  ++          G   EA+  A +     DV++++
Sbjct: 383 KRKVKTLILV------GEAKERINRDLGD-FSETFLIGTFEEAVLIAYQKSRIGDVVLLS 435

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE 491
             G  +  +  + E++     +I+R+
Sbjct: 436 -PGCSSFDMFDSFEERGDYFKEIVRK 460


>gi|220931750|ref|YP_002508658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
 gi|219993060|gb|ACL69663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
          Length = 456

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 112/289 (38%), Gaps = 29/289 (10%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V  E SS  L+  R    K    +F N   DH+D H + + Y+ AK R+FE  +  + 
Sbjct: 160 DWVVAEVSSFQLETIR--DFKPHISAFLNFSPDHLDRHLSVENYWKAKKRIFENQMSGD- 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH------LKKVCAIHNKQQVTISVE 296
            A++  DD    +V+K   +   RV  V  +            K +    ++ +V + VE
Sbjct: 217 YALVNYDD---YKVLKAVEDCSARVFGVSLKDNIEQGIYLEEDKLIINSADRSEVVLPVE 273

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PL G+  +YN   A+ +    G  +  + E + +    P R E V       
Sbjct: 274 ------SIPLKGKHNIYNIAFASLIAYLAGASTEAIKEGVYQFIPEPHRLEEVTVLKDRV 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  D   T+      +  +++      IV+   G DRD        +I   +  + ++ 
Sbjct: 328 MVIDDSKATNP--HAAINALKSFDQP--IVLIAGGQDRDADFSEFAREIVSRVRALILL- 382

Query: 417 DDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 E  +K+   ++  G     +  +  EA+R AI      DVL++
Sbjct: 383 -----GETKDKLAETVLRMGFNNIYKVRDMNEAVRKAIAHTEPGDVLLL 426


>gi|257466677|ref|ZP_05630988.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917830|ref|ZP_07914070.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691705|gb|EFS28540.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 447

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 125/360 (34%), Gaps = 38/360 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S +  +      +    G    I S   + ++           ++  
Sbjct: 104 IAVAGTHGKTTTSSMMSAVMLSLDPTIVVGGILPEIGS---NAKVGMGEYF-----IAEA 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                + + +               K      TN+  DH++ H   +    +  +  E+ 
Sbjct: 156 DESDNSFLFM---------------KPKYAVVTNIEEDHLETHGNLENIEKSFRQFVEQ- 199

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              E   ++  D A  + V     N       + Y+   +  K V  ++ K    + ++G
Sbjct: 200 --TERKVLVCTDCANVRAVFSE--NEKIMTYGMDYEANIM-AKNVEIVNGKTSFEVLIQG 254

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRG 355
           ++   F   +PG+  + N+L      +  G+    + + L        R++ +       
Sbjct: 255 ENQGRFYISIPGKHNILNSLPVIYFSLLFGVPKEEIQDKLLHFRGSKRRYDVLYWDQENN 314

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I  DYAH    ++  LK +++I  G+II +F                   +  D  I+
Sbjct: 315 RKIIDDYAHHPTEIQATLKGVKSIEKGKIIGIFQPHRYSRVHFLLERFAHCFEGLDELIL 374

Query: 416 TDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGH 469
                  E       EK  A+II  IP      ++   +   +E   + + + +  G G 
Sbjct: 375 LPIYSAGEQNESGVSEKDIAKIIPTIP-VTCIESKERVVERIMEETREDNHIFIFMGAGD 433


>gi|149002384|ref|ZP_01827326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182683613|ref|YP_001835360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
 gi|237650293|ref|ZP_04524545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821989|ref|ZP_04597834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|226722948|sp|B2IN76|MURD_STRPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|147759699|gb|EDK66690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182628947|gb|ACB89895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
          Length = 450

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 149/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T     
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTASDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH +   Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKDLTSKTEATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +     +D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 317 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|281424941|ref|ZP_06255854.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris F0302]
 gi|281400785|gb|EFB31616.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris F0302]
          Length = 459

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 130/361 (36%), Gaps = 41/361 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ ++    I  +S +          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHMDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSDSSDYVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II+ D       MK+    G +V     +    H + +   + +         
Sbjct: 214 IQPGGALIIHRDLE-----MKQHVQEGVKVYDYSREAGDFHAENIVIDNGEISFDFVSPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++  +     P    + NA+ A  +    G  +  +   +     V  RF+F   N +  
Sbjct: 269 ENVKNIKLGQPVPINIENAVAAMAMAQLNGCTAEELRYGMRTYAGVDRRFDFKIKNDKH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DY H    +    ++++ +  GR I V+F                 AL   D  ++
Sbjct: 328 VFLSDYGHHPKEVLQSARSLKELFKGRKITVMFQPHLYTRTRDFYHEFADALSNFDEVVL 387

Query: 416 TDDNPRSEDPEK------IRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T+  P  E+P +      I   +  G+    I K + ++ ++         DVLVV G G
Sbjct: 388 TEIYPAREEPIEGVTSKLIFDNLKPGVEKTIIRKDDVLDYVK-----SRDFDVLVVLGAG 442

Query: 469 H 469
           +
Sbjct: 443 N 443


>gi|163752979|ref|ZP_02160103.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
 gi|161326711|gb|EDP98036.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
          Length = 446

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 122/354 (34%), Gaps = 42/354 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++       + +   L+    G                          
Sbjct: 104 AMIVGITGSNGKTTTTMLTHHVLKEGELNVGVAGNMG-------------------DSFA 144

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             ++ Q      +E SS  LD   +   K      TN+  DH+D +    + Y  +K R+
Sbjct: 145 KQVAEQSYDTYVLELSSFQLD--GIIDFKPRIAIITNITPDHLDRYDYKFENYIASKFRI 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 K+   I  ADD      MK+ H     ++    + K     +  A    + + +
Sbjct: 203 -AMNQTKDDYLIYDADDEVVTNWMKK-HPVKSTLIPFSLKNKL----ENGAYLENENIIL 256

Query: 294 SVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +++ K          L G+  V NA+ A+ +   + I    + E +     V  R E V 
Sbjct: 257 TIQNKTITMPTDSLALEGKHNVKNAMAASAVAQLLNIRKQTIRESMSGFQGVEHRLEKVL 316

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  I    A   N        + ++T+  + +V   G D+      ++  +   + 
Sbjct: 317 KIQNVQYINDSKATNIN---ATYYALESMTTQTVWIV--GGVDKGNDYSDLLPLVHEKVK 371

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I  +  DN       KI           +E  +  EA++ A ++  K D +++
Sbjct: 372 AIICLGVDN------SKIIESFGRVADLMVETTSMEEAVKIAHKIAEKGDNVLL 419


>gi|32490954|ref|NP_871208.1| hypothetical protein WGLp205 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173033|sp|Q8D2Z7|MURC_WIGBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25166160|dbj|BAC24351.1| murC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 475

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 136/367 (37%), Gaps = 43/367 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVVSSA    +          I VV    +FLS      YG      + V+GT GK++  
Sbjct: 75  IVVSSAIKEDNLEIIYAKKLNIPVVKRA-EFLSELMRFKYG------IIVSGTHGKTTTT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I + +    F         + + D      S  ++++A    +S           
Sbjct: 128 SIISYIYKEA--KLFPTYLYGGRLNNSDDYGNLGNSKYWISEADESDNSF---------- 175

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       + I    TN+ +DH++ +Q            F   +P    +++  DD
Sbjct: 176 ---------LFFRPIISVVTNIEKDHLESYQGNFKKLKESFIKFLHNIPFYGYSVLCLDD 226

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLP 307
              K+++   +    ++++ G+       + K    + K    + ++ +     F+  L 
Sbjct: 227 IEIKKIIPLINK---KIVTYGFNRNSDFCITKFFQSNKKIIFIVYIKHQKRYLKFVSNLL 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-------NSRG-GRIY 359
           G+    N   A  + I  GI   ++L  ++K   +  RF+F+         N +G   I 
Sbjct: 284 GKHNALNITAAITIAIKEGIKYNIILNSIKKFPGINRRFDFINKYDLSNLNNKKGTITIV 343

Query: 360 VDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    L++ +K+++ I +  R+I++F                  L   DI ++ + 
Sbjct: 344 DDYGHHPTELKLTIKSVKKIWNKRRLIMIFQPHKYTRTKYLYNYFVKVLSTVDILLIMEI 403

Query: 419 NPRSEDP 425
               E+P
Sbjct: 404 YSAGENP 410


>gi|288553797|ref|YP_003425732.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudofirmus OF4]
 gi|288544957|gb|ADC48840.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudofirmus OF4]
          Length = 432

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 125/404 (30%), Gaps = 53/404 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS+AY               + VD    FL  F  +         +AVTG  GK+S  
Sbjct: 64  VIVSAAYGEDHEEVARAKEIG-IPVDQYPHFLGDFIQQF------TSVAVTGCHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +   +  +S+ IG   T             +  Y    L+Y              
Sbjct: 117 GLLSHVLGSAFPTSYLIG-DGTGKGEEDSKYFVFEACEYRRHFLNY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YAD 249
                       K      TN+  DH DY +     F A    F E+  +   AI+   D
Sbjct: 162 ------------KPDYCIMTNIDFDHPDYFKDVDDVFEA----FSEMAMQVKKAIVACGD 205

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
           D Y + +     N          Q  F   + V       +  + V    +  F  P  G
Sbjct: 206 DQYLQGIHA---NVPVVFYGFSEQNDFQ-ARSVEVTDKGTKFDVYVRNNLYGTFTIPGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC    + + ++ EHL+    V  RF      S+   +  DYAH    
Sbjct: 262 NHNVLNALAVIALCHYENVPAEVLKEHLKTFQGVKRRFTEKKVGSQ--ILIDDYAHHPTE 319

Query: 369 LEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   +    +      ++ +F                 AL LAD   + D   + R +  
Sbjct: 320 IAATVDSAKKKYQDHEVVAIFQPHTFTRTKTFLNEFAEALKLADHVYLCDIFGSAREQAG 379

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                ++   IP         E +    E  N    L+  G G 
Sbjct: 380 SLTIQDLQELIPQSQLIT--EEDVERLKEHQNS--TLLFMGAGD 419


>gi|260913004|ref|ZP_05919489.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
 gi|260632994|gb|EEX51160.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
          Length = 482

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 134/415 (32%), Gaps = 44/415 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +          I V+    +   + A  +  +H    +A+ GT GK+
Sbjct: 84  ASVVVVSSAIKPDNIEVVTAKEKRIPVI----QRAQMLAEIMRFRHG---IAIAGTHGKT 136

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  +   +GL    +      S+    +   +         ++       + +  
Sbjct: 137 TTTAMISMVYAEAGLDPTFVNGGLVKSAGTNAHLGCS------RYLIAEADESDASFL-- 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH++ +             F   LP    A++ 
Sbjct: 189 -------------HLQPMVSVVTNIEPDHMETYNGSFEEMKQTYVNFLHNLPFYGLAVLC 235

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD   +E+M +             +  +                ++  G+  D L  +P
Sbjct: 236 ADDPVLEELMPKV-GRQVITYGFSEKADYRIEDYQQTGFQGHYTVMTPSGERIDVLLNVP 294

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAH 364
           G     NA  A  +    GI++  +L  L        RF+ +G   R      +  DY H
Sbjct: 295 GRHNALNATAALAVAKEEGIENEAILAALADFQGAGRRFDQLGHFIRPSGKVMLVDDYGH 354

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + + ++  R    + R++++F                  L   D  I+ D     E
Sbjct: 355 HPTEVAVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGE 414

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGH 469
            P  I       +   I    +++ I             ++L   D+++  G G+
Sbjct: 415 AP--IAGADSRSLCRSIRNLGKVDPIFVSDHNQLGEILDQILQDGDLILAQGAGN 467


>gi|170739957|ref|YP_001768612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium sp. 4-46]
 gi|168194231|gb|ACA16178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           sp. 4-46]
          Length = 460

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 114/339 (33%), Gaps = 50/339 (14%)

Query: 61  PQAIAQG-AEAIVVSSAYS----------------LQDFSATIRSNTPILVVDNTRKFLS 103
            +A AQG A A +  +A++                   ++    +   + V+ +   F  
Sbjct: 46  AEAAAQGIATADLREAAWADFAALLLAPGVPFTHPEPHWTVKRAAEAGVPVIGDIELFCR 105

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+          +A+TGT+GKS+  + +  + + +G      G   T           
Sbjct: 106 ERAASA---PDAPFVAITGTNGKSTTTALIAHVLRETGHDVQMGGNIGT----------- 151

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                     LS           +E SS  +D      +    G   N+  DH+D H T 
Sbjct: 152 --------AILSLAPPSRDRVHVIEMSSFQIDL--TPTLAPSIGVLLNVTPDHLDRHGTM 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y   K RL          A+I  DD Y++ +  R      RV  VG   +   +    
Sbjct: 202 ENYAAIKERLVAG----ADHAVIGVDDDYTRAISARRDGPLTRVH-VGEGAEAPGILARH 256

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +             D   +  L G     NA VA  +   +G+        L     +P
Sbjct: 257 GLLIDGTAEPPAPVADLTGIASLRGAHNWQNAAVAYAVARGLGVAPDAFARALRSFPGLP 316

Query: 344 GRFEFVGTNSRGGRIYVDY--AHTSNSLEMILKNIRTIT 380
            R E VG   RGG ++++   A  ++S E  L     + 
Sbjct: 317 HRMEEVG--RRGGVLFINDSKATNADSTEKALAAFPRVH 353


>gi|255536592|ref|YP_003096963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342788|gb|ACU08901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 457

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 124/351 (35%), Gaps = 37/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GK++  S +  I +  GL    +G    I                     
Sbjct: 111 AKIIAITGSNGKTTTTSLIYHILKNDGLK---VGLGGNIG----------------KSFA 151

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRL 233
             ++ +   +  +E SS  LD   +   +       NL +DH+D Y+   + Y  AK R+
Sbjct: 152 KQVADESFDYYVLEVSSFQLDD--IQNFRPHISLLLNLSQDHLDQYNYNYEEYALAKFRI 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             E    ++  I   DD  S+ ++++      +++    + K    +      +K  V +
Sbjct: 210 -AENQENDNFFIYNKDDEMSQNLLEKLE-VKAKMIPFSLKEKLK--EGGFFTGDKMVVKL 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             E         L G   V N+L A+     + I +  +   L     V  R E V    
Sbjct: 266 QDEFSMDIAELALVGNHNVANSLAASIAGKILKISNESIRNSLMTFQAVQHRLEQVAETG 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G R   D   T+  +      + ++    + +V   G D+      I   +   +  I 
Sbjct: 326 -GVRFINDSKATN--VNATYYALESMKQPTVWIV--GGIDKGNDYTEIEDLVKRKVKAIV 380

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN      +KI               +  EA+  +  +  K D +++
Sbjct: 381 CLGLDN------QKIVDFFKSKKDLIYSTSSMAEAVNISKSLAAKGDAVLL 425


>gi|289207544|ref|YP_003459610.1| UDP-N-acetylmuramate [Thioalkalivibrio sp. K90mix]
 gi|288943175|gb|ADC70874.1| UDP-N-acetylmuramate [Thioalkalivibrio sp. K90mix]
          Length = 467

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 128/374 (34%), Gaps = 32/374 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +LAV GT GK++ AS +  I   +GLS   +     I     +  +
Sbjct: 95  QWLAEHVL--HDRWVLAVAGTHGKTTTASLLAWILDHAGLSPGFL-----IGGVPGNFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYH 220
           +           + +       +  +         R   +  +       NL  DH D +
Sbjct: 148 S-----------ARMGEAPFFVIEADEYDSAFFDKRAKFVHYRPRTLVLNNLEFDHADIY 196

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHL 279
               A       L    +P +   ++ A DA  + V++        R+ +    G  + L
Sbjct: 197 PDLAAIERQFHHLV-RTIPGQGLILLPACDAALERVLEMGCWTPVERITTDPDTGDTVAL 255

Query: 280 KKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                  +  +  + V G       + + G+  + NAL A G     G+  A  +  L  
Sbjct: 256 AARPLNEDASEFEVLVNGVVQGRVAWEMTGQHNLSNALAALGAARHAGVPLAAGIAALPA 315

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVFGCG-GDRD 395
              V  R E       G R+  D+AH   ++ + L+ +R   +  GR+I V         
Sbjct: 316 FRGVRRRQEL-RAEIDGIRVIDDFAHHPTAIRLTLEGLRGRVVPGGRLIAVLEPRSNTMR 374

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-E 454
            G        AL+ AD A +      + D +    ++   + G +     IE++   I  
Sbjct: 375 MGIHAEALGAALERADAAHLY----HAPDIDWSTDDLERQLGGQLAVARDIESLLQGILA 430

Query: 455 MLNKQDVLVVAGKG 468
                D LV+   G
Sbjct: 431 TARPGDTLVIMSNG 444


>gi|50084464|ref|YP_045974.1| cyanophycin synthetase [Acinetobacter sp. ADP1]
 gi|49530440|emb|CAG68152.1| Cyanophycin synthetase [Acinetobacter sp. ADP1]
          Length = 914

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 132/377 (35%), Gaps = 35/377 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I A+TGT+GK++ +  +  I + +G     +G TST + +   N            A  
Sbjct: 485 PIAAITGTNGKTTCSRMLAHILKMAGHV---VGQTSTDAVYIDGNVTVKGDMTGPVSAKM 541

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            L    V    +E +  G+ +  L       G+  N+  DH+      T       K  +
Sbjct: 542 VLRDPSVDIAVLETARGGIVRSGLGYQFCDVGAVLNVSSDHLGLGGVDTLDGLAEVKRVI 601

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH------- 286
            E     +   ++ AD+AY+ ++   +       ++   + K +                
Sbjct: 602 AE---VTKDTVVLNADNAYTLKMAGHSPAKHIMYVTRDAENKLVREHIRLGKRAVVLEKG 658

Query: 287 -NKQQVTISVEGKDFDFLFPLPGE--------FQVYNALVAAGLCIAIGIDSALVLEHLE 337
            N  Q+ I   G     ++               V NA+ AAG+  A+G +   +   L 
Sbjct: 659 LNGDQIVIYENGTQIPLIWTHLIPATLEGKAIHNVENAMFAAGMAYALGKNLDQIRIGLR 718

Query: 338 KLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFGCGGD 393
                  +        +  G R+ +DY H   ++  +  L +       R++ V   G  
Sbjct: 719 TFDNTFFQSPGRMNVFDKHGFRVILDYGHNEAAVGAMTELVDRLNPRGRRLLGVTCPGDR 778

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE---KIRAE--IIHGIPG--FIEKGNRI 446
           RD+    I  K+A    +     DD+ R   P+   KI  +  I  G+P           
Sbjct: 779 RDEDVVAIAAKVAGHFDEYYCHRDDDLRGRAPDETPKIMRDALIQLGVPESRIHIVEQEE 838

Query: 447 EAIRTAIEMLNKQDVLV 463
           +++   +      D+++
Sbjct: 839 DSLAAVLTEAQVDDLVL 855


>gi|313124202|ref|YP_004034461.1| UDP-N-acetylmuramate--l-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280765|gb|ADQ61484.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 439

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 114/358 (31%), Gaps = 47/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G+ GK+S    +  +   +  +SF IG    +    +D+R                
Sbjct: 109 IGVAGSHGKTSTTGLLATVLGEAAPTSFLIGD--GMGKGVKDSRFFVYEAD--------- 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + +  Y +A      + 
Sbjct: 158 ----------EYRRHFLAYH------PDYQIMTNVDFDHPDYFKDRDDYASAFQTAAAQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD      +++      +  + G           V       +  +   
Sbjct: 201 --TKKGLFVWGDDER----LQKIQPKTAKKYTYGLKDSDDFQAFDVVKTTEGAKFHVRAN 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+D  +F   L G+  V NA     +    GID  +V + L K      RF     +   
Sbjct: 255 GEDLGEFSIHLFGDHNVMNATAVIAIAFTEGIDLDVVRKGLVKYTGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    L   ++  R      +++ +F         +        L   D A 
Sbjct: 313 TVVIDDYAHHPTELRATIQAARQKFPDRKLVTIFQPHTYSRTKEFEEEYVEILKGVDKAF 372

Query: 415 VTDDN-PRSEDPEKIR-AEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T       E    I+  +I   IPG      + ++ +     +  K D +V  G G 
Sbjct: 373 LTPIYGSAREAAGDIKSEDITSQIPGAEVIDFDNLKDL-----LAYKGDCIVFMGAGD 425


>gi|282880603|ref|ZP_06289309.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305498|gb|EFA97552.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 457

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 130/407 (31%), Gaps = 47/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V + A            +    V+    + L L      G      L   GT GK++ +
Sbjct: 75  VVYTPAIPESHMELQYFKSNGFEVLKRA-QVLGLLTRTHRG------LCFAGTHGKTTTS 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    I  +S      +   + +   +++               +Y+ S    ++ +EA 
Sbjct: 128 TMCAHIMHQS-----HVDCNAFLGGISKNYGS------------NYILSDTSDYIVIEAD 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H L   +      T+   DH+D + T++AY  +  R +  L+      II+   
Sbjct: 171 EFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTTLIKPGGALIIHEGL 226

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              ++V     N   RV      G   H + +   +           ++        P  
Sbjct: 227 EMQEDV-----NNEVRVFRYSLNGGDFHAENIKIENGTITFDFISPIENVTQVELGHPIP 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NA+ A  +    G  +  +   +     V  RF+F   N R      DYAH    +
Sbjct: 282 INVENAVAAMAMAQLNGCTAEELRYGMSTYKGVDRRFDFKVNNERH-VFLSDYAHHPKEI 340

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
               K++R       +  +F                 AL   D  I+ D  P  E P   
Sbjct: 341 YQSAKSLRELYHDRHVTAIFQPHLYTRTRDFYKEFAEALSQLDEVILCDIYPAREAPIPG 400

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                I  E+       I K + I+ ++         DVLVV G G 
Sbjct: 401 VTSALIYNELTCKEKSMIHKEDVIDLVKK-----RDFDVLVVLGAGD 442


>gi|297583565|ref|YP_003699345.1| UDP-N-acetylmuramate/alanine ligase [Bacillus selenitireducens
           MLS10]
 gi|297142022|gb|ADH98779.1| UDP-N-acetylmuramate/alanine ligase [Bacillus selenitireducens
           MLS10]
          Length = 438

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 122/404 (30%), Gaps = 53/404 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+ S AY+  +           + V +  KFL  F            +AVTG+ GK+S  
Sbjct: 64  IIASPAYNETNPEVKEALTRG-IKVHSYPKFLGEFIKGF------TSIAVTGSHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + + +  +S+ IG   T             +  Y    L+Y              
Sbjct: 117 GLLAHVLENAKPTSYLIG-DGTGKGMENSEYFVFEACEYRRHFLNYY------------- 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY +  +  F A   +  ++       I   DD
Sbjct: 163 -------------PNYAIMTNIDFDHPDYFKDAEDVFQAFQEMANQV---NKAIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              + +      A   ++  G+        + V          + + G  +  F  P  G
Sbjct: 207 ESLQRL-----TASVPIVYYGFSEDHDFSAQNVDYDPEGTHFDVMIRGAFYGRFTIPGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL    +C    +    +  H+     V  RF    T   G  +  DYAH    
Sbjct: 262 NHHILNALAVIAICHYEEVTLETIQTHIATFGGVKRRFS--ETEMNGQILIDDYAHHPTE 319

Query: 369 LEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   ++   +     +++ VF                 +L+ AD   + D   + R    
Sbjct: 320 IAATIESARKKYPDRQVVAVFQPHTFSRTEAFLDDFARSLENADHVYLCDIFSSAREFKS 379

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +     +   I G          +  + E      VL+  G G 
Sbjct: 380 DLTINHLQERIDGAKLITEDGTLVLNSHEHA----VLLFMGAGD 419


>gi|15900589|ref|NP_345193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae TIGR4]
 gi|111658685|ref|ZP_01409328.1| hypothetical protein SpneT_02000191 [Streptococcus pneumoniae
           TIGR4]
 gi|30316108|sp|Q97RU8|MURD_STRPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|14972164|gb|AAK74833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae TIGR4]
          Length = 450

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 148/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A           
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH +   Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKDLTSKTEATVVPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +     +D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 317 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|325684170|gb|EGD26356.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 439

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 116/358 (32%), Gaps = 47/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G+ GK+S    +  +   +  +SF IG    +    +D+R                
Sbjct: 109 IGVAGSHGKTSTTGLLATVLGEAAPTSFLIGD--GMGKGVKDSRFFVYEAD--------- 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + +  Y +A     ++ 
Sbjct: 158 ----------EYRRHFLAYH------PDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD      +++      +  + G           V       +  +  +
Sbjct: 201 --TKKGLFVWGDDER----LQKIQPKTAKKYTYGLKDSDDFQAFDVVKTTEGAKFHVRAQ 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  V NA     +    GID  +V + L K      RF     +   
Sbjct: 255 GKDLGEFTIHLFGDHNVMNATAVIAIAFTEGIDLDVVRKGLVKYTGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    L   ++  R      +++ +F         +        L   D A 
Sbjct: 313 TVVIDDYAHHPTELRATIQAARQKFPDRKLVTIFQPHTYSRTKEFEEEYVEILKGVDKAF 372

Query: 415 VTDDN-PRSEDPEKIR-AEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T       E    I+  +I   IPG      + ++ +     +  K D +V  G G 
Sbjct: 373 LTPIYGSAREVAGDIKSEDITSQIPGAEVIDFDNLKDL-----LAYKGDCIVFMGAGD 425


>gi|254496588|ref|ZP_05109456.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
 gi|254354212|gb|EET12879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
          Length = 454

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 143/419 (34%), Gaps = 43/419 (10%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL--VVDNTRKF---LSLFASR 108
            DG+     A+   A+ ++V +A         I+   P+L  V++  + +       A  
Sbjct: 50  TDGYEDASLALK--ADVVIVGNA---------IKRGMPVLEAVIEAGKSYTSGPQWLAEN 98

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +  K+   ++A++GT GK++  S V  I  ++GL+   +     +SS  + +        
Sbjct: 99  ILSKY--QVIAISGTHGKTTTTSMVSWILDQAGLNPGFL--IGGVSSDFKTSARLGGGKW 154

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           ++ +A  Y S+                       +       NL  DH D +   +A   
Sbjct: 155 FVIEADEYDSAFFDKRPKFMHY------------RPRIAILNNLEFDHADIYPNLEAI-Q 201

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            +       +P    AI   DD    EV+ R      R+  +   G           +  
Sbjct: 202 MQFHYLLRTIPASGVAIKPRDDKALNEVIARGQ--YSRIEEIALAGDAQWSVTFIEDNGS 259

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +    +  +  + L G F V N L A    +  G+   +  E LE+   V  R E 
Sbjct: 260 AFKVLHYGEEIAEVHWSLIGRFNVENGLAAIAASVNAGVSPKVAAEALERFTPVKRRLE- 318

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVF-GCGGDRDQGKRPIMGKIA 406
           V +N  G  +Y D+AH   ++   +    R+    RI  V          G        A
Sbjct: 319 VKSNKHGITVYDDFAHHPTAITRTIDALKRSNRHRRIFAVLEFASYTMRTGIHAAEMAEA 378

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           L   + A + + N        ++  + +    +    +  E        +   D ++V 
Sbjct: 379 LAPVNGAYILEPNDF-----NLKETVNNWTCPYQICKDTDEIANEVASQVQDGDAVLVM 432


>gi|126665248|ref|ZP_01736231.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
 gi|126630618|gb|EBA01233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
          Length = 448

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 124/350 (35%), Gaps = 37/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GK++V + V  + + +G      G   T +                    
Sbjct: 109 APIIAITGSNGKTTVTTLVADMARDAGYQVAVGGNIGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L + G     +E SS  L+    D +  +A +  N+  DH+D +  + AY+ AK R+F
Sbjct: 149 LDLLNTGARLYVLELSSFQLE--TTDELNALAATVLNVSDDHMDRYPDKMAYYQAKQRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                    AI+  DDA S  + +      C  ++      F       + H    VT  
Sbjct: 207 RGC----QYAIVNLDDALSTPMARNTLRFICFGMNRVNPETFSTRDDSVSGHP--WVTWG 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         L G   + N + A GL  A G+    +L      H +P R E +   + 
Sbjct: 261 LDNLIRADELGLVGRHNLSNVMAALGLGKAAGLPMDSMLATARAFHGLPHRCESLRLVNG 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I         +    L ++         +V   GGD        +   A       +
Sbjct: 321 VEYINDSKGTNVGATVAALDSLAPAAGK---IVLIAGGDGKGADFSPLADPARRHCRAVV 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D  +++  +  G    IE  +  +A+ +A  +    D +++
Sbjct: 378 LI-----GRDAAQLQEVLAQGTATHIE-NSLADAVASAARLAQPGDRVLL 421


>gi|225854210|ref|YP_002735722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae JJA]
 gi|254766060|sp|C1CD51|MURD_STRZJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722576|gb|ACO18429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae JJA]
          Length = 450

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 130/378 (34%), Gaps = 41/378 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G      G    I   A            L   L
Sbjct: 112 APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKDTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     GV                           TNL   HIDYH   + Y  AK  + 
Sbjct: 169 SSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGLFEEYVAAKWNI- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +      ++  +    K++  +         ++         K   A     Q+   
Sbjct: 211 QNKMTAADFLVLNFNQDLVKDLASKTEATVVPFSTLE--------KVDGAYLEDGQLYFR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG   V NAL    +     +D+  + E L     V  R +FV  + +
Sbjct: 263 GEVVMAANEIGVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVD-DIK 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +V+   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       +  E+++         ++E  +  +A R A E+  + DV++++   + +  +
Sbjct: 378 L------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDM 430

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E +  +  D + E+
Sbjct: 431 YANFEVRGDLFIDTVAEL 448


>gi|227486694|ref|ZP_03917010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235282|gb|EEI85297.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 449

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 131/356 (36%), Gaps = 44/356 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GK+S  S V  I    G  ++ +G                        
Sbjct: 102 PDREKIAITGTNGKTSTTSMVAHILNECGKPAYAVGNIG-------------------EG 142

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +  +       E SS  L  H     K   G+  N+  DHID+H +   Y N+K++
Sbjct: 143 VLWQMYEKK-GVFVEELSSFQL--HDTQAYKPHIGAILNIKEDHIDWHGSFDDYINSKLK 199

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQ 290
           L      +    +I  +D  S++ +K          S     +G F+   K+C  +    
Sbjct: 200 LAANQ-DQGDYLVINHEDEISQKHIKDFKAQIYEFSSQNIVDRGLFLEGNKICLRNGGCV 258

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +   ++ +D        G     N + A  L    G++ + +++ ++    +  R E+V 
Sbjct: 259 IEEILDVRDLSV----IGRHNYENVMAAILLTYLYGLNLSEIIKAIKTFKSIAHRLEYVR 314

Query: 351 TNSRGGRIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           T S G   Y D   T+  +S++ I    R       I++   G D+       +     +
Sbjct: 315 TLS-GIDFYNDSKGTNVDSSVKAIESFDRP------ILIIAGGYDKHIDYTDFVKAFRKN 367

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + I+          EK++A        +I   +  EAI TA       DV+++
Sbjct: 368 GKLMVIM------GATKEKLKALCEKYDIKYILVKDMNEAINTAYSKGENGDVVLL 417


>gi|227499510|ref|ZP_03929617.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227218389|gb|EEI83640.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 461

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 129/410 (31%), Gaps = 50/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGKSSV 129
           +V + A    +          + VV  TR  FL            +N +AV+G+ GKS+ 
Sbjct: 74  VVYTDAILDDNEELIAAKKLSVPVV--TRGVFLGALMRNY-----KNSIAVSGSHGKSTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I   S      I     +     + R+ +           YL ++   +     
Sbjct: 127 TSMISKILMHS-DKDATILLGGELEEMKGNVRVGSEE---------YLVTEACEYKGNIR 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +                  N+  DH+DY++  +   N           + S  I   +
Sbjct: 177 YYY-----------PQTLIVLNIDEDHLDYYKDLEDIVNTFKEYLSNQ-DENSMTITNLN 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPG 308
           +  ++ +                +  +             +  +    G    F   + G
Sbjct: 225 EDNNRLIFDSVKGRLITYAQDNEEADYNAFNIQFDNDGHPEFDLKFANGSIEHFKLGVIG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA+ +       GI    + E++ K   +  R + +G  S    I  DY H  + 
Sbjct: 285 RHNINNAMASIIATYENGISIKTIKENIVKYTGLDRRMQVIGHVSD-ATIMTDYGHHPSE 343

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DP- 425
           +++ +  +   T GR+I V+                   D  D  IVTD     E  DP 
Sbjct: 344 IKVTVDALAEHTKGRLICVWQPHTYSRTKTLFNEFLNCFDSCDEVIVTDIYAAREKFDPT 403

Query: 426 ----EKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               + + A +  G     I  F E  +    I   I    K D+++  G
Sbjct: 404 IHSKDVVDALVKKGINAKYISQFEECKD---YIEKII---KKDDLVLTTG 447


>gi|148985270|ref|ZP_01818493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922468|gb|EDK73587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799723|emb|CBW32288.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae OXC141]
          Length = 446

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 150/444 (33%), Gaps = 59/444 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A     T     
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTASDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH +   Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +  ++   +   + +  D  SK        A     S   +    +L+        
Sbjct: 206 AKWNIQNKMTAADFLVLNFNQDLTSK------TEATVVPFSTLEKVDGAYLED------- 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +    G+D+  + E L     V  R +F
Sbjct: 253 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQF 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 313 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 367

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 368 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PA 420

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 421 NASWDMYANFEVRGDLFIDTVAEL 444


>gi|332202563|gb|EGJ16632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41317]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 131/376 (34%), Gaps = 41/376 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GK++  + + ++   +G      G    I   A            L   LS 
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKDTLVMELSS 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               GV                           TNL   HIDYH     Y  AK  + + 
Sbjct: 171 FQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGAFSEYVAAKWNI-QN 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +      ++  +   +K++  +         ++         K   A     Q+    E
Sbjct: 213 KMTAADFLVLNFNQDLAKDLASKTEATVVPFSTLE--------KVDGAYLEDGQLYFRGE 264

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL    +    G+D+  + E L     V  R +FV  + +G 
Sbjct: 265 VVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-DIKGV 323

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + Y D   T+  +    K +        +V+   G DR      ++  I   L  + I+ 
Sbjct: 324 KFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVIL- 378

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
                 +  E+++         ++E  +  +A R A E+  + DV++++   + +  +  
Sbjct: 379 -----GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDMYA 432

Query: 477 NGEKKMSVDCDIIREI 492
           N E +  +  D + E+
Sbjct: 433 NFEVRGDLFIDTVAEL 448


>gi|255320976|ref|ZP_05362149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262379934|ref|ZP_06073089.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
 gi|255301940|gb|EET81184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262298128|gb|EEY86042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
          Length = 448

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 134/396 (33%), Gaps = 58/396 (14%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A  L +    I    P  VV +      L            I+A+TG++ KS+V + +  
Sbjct: 76  APQLPEIQQAIAKGIP--VVGDI----QLLRRATE----VPIVAITGSNAKSTVTTLIGL 125

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + + +G      G                        AL  L  Q    + +E SS  L+
Sbjct: 126 MAKEAGKKVAVGGNLG-------------------RPALDLLKDQP-ELIILELSSFQLE 165

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +        N+  DH+D H     Y  AK R+F+ +       +   DDA S+ 
Sbjct: 166 --TTSLLNAEVAVVLNMSEDHLDRHGDMLGYHAAKHRIFQGV----KKVVFNRDDALSRP 219

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYN 314
           ++  A      V S G     ++   V    +          +        + G   + N
Sbjct: 220 LVPDA----VPVQSFGLNAPDMNQYGVLRDTDGTLWLARGRERLLKSTEMYIQGTHNIAN 275

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT-SNSLEMIL 373
           AL    L  AIG+    +LE L+    +  R E+V T +        Y  +   ++   L
Sbjct: 276 ALACLALGEAIGLPLNSMLETLKSFKGLAHRCEYVDTVNN----VRYYNDSKGTNIGATL 331

Query: 374 KNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             I  +          +VV   G  + Q  + +   +   +  + ++       ED  KI
Sbjct: 332 AAIEGLGAAIAPRKGKVVVILGGQGKGQDFKALRAAVQQYVKTVVLI------GEDALKI 385

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              I  G    ++     EA++      + +DV+++
Sbjct: 386 EQSI-EGSTEILKAATLQEAVQLCHAKADAEDVVLL 420


>gi|149377264|ref|ZP_01895011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
 gi|149358452|gb|EDM46927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
          Length = 446

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 144/394 (36%), Gaps = 47/394 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS   S+ + +    ++   ++  +                   I+A+TG++GK++V 
Sbjct: 73  LVVSPGISVAEPAIRGAADQGAVIRGDI--------DLFSEAADAPIIAITGSNGKTTVT 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G      G   T +                      L  +G     +E S
Sbjct: 125 TLVGEMARAAGRRVEVGGNIGTPA--------------------LDLLGRGADLYVLELS 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+  R   +  +A +  N+  DH+D +  + AYF AK R+F         A++  DD
Sbjct: 165 SFQLETTR--ELNALAATVLNVSDDHMDRYPDKMAYFQAKQRIFNGC----QNAVVNLDD 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A S  + +       R L  G+                  +T   +         L G+ 
Sbjct: 219 ALSTPMARD----NLRFLCFGFYRVNPDTFSTRDDDEGTWITFGFDNLLLAEELGLMGQH 274

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N + A  L  A G+   ++L+ +++   +P R EFV   S    I         +  
Sbjct: 275 NISNVMAALALGHAAGLPMDVMLDTVKRFKGLPHRCEFVRRVSDVDYINDSKGTNVGATT 334

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             ++++  + +G  IV+   G  +      +   +A     + ++        D   I  
Sbjct: 335 AAIESL--VPTGGKIVLIAGGEGKGADFSLLAEPVAAHCRAVVLI------GADAGTIAT 386

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + + +   +   +   A+ TA ++    D +++
Sbjct: 387 ALGNRV-ETVNAADIAGAVHTAKKLAQPGDRVLL 419


>gi|146295957|ref|YP_001179728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166224756|sp|A4XI02|MURD_CALS8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145409533|gb|ABP66537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 453

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 116/284 (40%), Gaps = 19/284 (6%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T   +E SS  L+   +   K + G   N+  DH++ H     Y  AKMR+FE  + +E 
Sbjct: 160 TIFVIEISSFQLE--TIKYFKPMVGCILNITPDHLNRHMNMDNYIRAKMRIFEN-IDQEG 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            +++  D++ +++++  A      V++    +    +   V      +     VE     
Sbjct: 217 YSVLNMDNSITRDLIGCAKGT---VITFSKNESDTQNSVFVDGDFIYRNFLGKVEKVMRK 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PGE  + N L A G  +   I  +++ + L++   V  R EFV     G R Y D
Sbjct: 274 DDIFMPGEHNLENTLAAIGCVLPFEIQPSIIEKTLKEFKGVEHRIEFV-REINGVRFYND 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+        N   +     I++   G D+ +        I+  +  + ++      
Sbjct: 333 SKGTNTDASSKALNSFEVP----IILIAGGYDKGESFEKFAKLISQKVKKVFLL------ 382

Query: 422 SEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  +KI  ++   G   F    +  EA++ + E+  + DV+++
Sbjct: 383 GQTKQKIADQLQKIGYLNFEFVEDLKEAVKKSFEIAKEGDVVLL 426


>gi|320334257|ref|YP_004170968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
 gi|319755546|gb|ADV67303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
          Length = 424

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 137/444 (30%), Gaps = 79/444 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR       FVA+ G +  G+ F+  A+A GA  ++                    
Sbjct: 23  LTWDSREAGPNVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDAPRA------------ 70

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V + +  L  +A      +P  ++ +TG+ GK++               +      + 
Sbjct: 71  VRVPDAQVALFAWARAERAHNPL-VVGITGSVGKTT---------------AKAYAAAAL 114

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            + F            +L +         V    +     G  +  +D ++   G  T++
Sbjct: 115 DAHFMPVFNTMPAIACFLIEFGRSARPLVVE---MGIDRLGEMRELVDLVRPDVGVVTSI 171

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++   T +     K  + E                       +A        + G+
Sbjct: 172 GEAHLEAFGTVETIAREKGVILEAPRGLVGV---------------QASPFYPGRDTYGF 216

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    +                +     P   + Q   A++   L    G+     
Sbjct: 217 GEATFAGDALQVSAEAAAFVY----GEVPVALPHASKVQAEAAVLGLALAEVAGVPVGTA 272

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG 391
            E L  + V  GR+  +     G    +D A+ ++ L +    +      GR + V G  
Sbjct: 273 AERLAGVSVPGGRYRVLP----GRFTVIDDAYNASPLSVRAALDALAALPGRHVSVLGRM 328

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEA-- 448
            +    +R +  ++                     + RA++  G+  F  E G R  A  
Sbjct: 329 LELGDTERELHAQVGAY-----------------ARQRADVTFGVGAFASELGERAHATV 371

Query: 449 ---IRTAIEMLNKQDVLVV-AGKG 468
              +   +  +   DV++V A +G
Sbjct: 372 PDLLADLLAEVRDGDVVLVKASRG 395


>gi|312880217|ref|ZP_07740017.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
 gi|310783508|gb|EFQ23906.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
          Length = 485

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 140/413 (33%), Gaps = 44/413 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V +SA S +            + V    + LS   +R  G      + V GT GK++ +
Sbjct: 77  LVYTSAISEEHPEIRAARERG-IPVARRAEVLSDLFNRRRG------IGVAGTHGKTTTS 129

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I + +G     I PT  +     D                     G T V+    
Sbjct: 130 SMIALIAENAG-----ISPTVALGGELCDIGCNAKLGS------------GETMVAELDE 172

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S G      +         TN+  DH+D++ T ++  +A  R      P  S   + A+D
Sbjct: 173 SDGS----FELFSPEIAVVTNIDWDHVDHYPTYESVGDAFHRFALGKKPAGSLV-LCAED 227

Query: 251 AYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDF-DFLF 304
           A ++ + +R H    A   + + G+   +              +   +   G        
Sbjct: 228 AGTRRLAERLHEDGLASETLYTYGWGTSWTWGATDVTPLPGGGIRCLVHFRGTPLGTLSL 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + GE  V NAL A   C  +GI   +    L        R + VG  + G  +Y DY H
Sbjct: 288 RVSGEHNVLNALAACAACSIVGIPFEVSCRALSTFKGAKRRLQRVGA-AEGVEVYDDYGH 346

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +   L+ +R      R++V+F                  L  AD  ++       E
Sbjct: 347 HPREIHATLRALRGAFPHRRLLVLFQPHRFTRTAAMFREFATVLTGADRVLLLPVYGADE 406

Query: 424 DP-----EKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P       + AE     G       G+  EA+   +     QDV++  G G+
Sbjct: 407 TPIPGVGSHLIAEAFPKEGPTRLDLCGSFSEAVEVVLRERRDQDVVLTVGAGN 459


>gi|294792042|ref|ZP_06757190.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
 gi|294457272|gb|EFG25634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
          Length = 456

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 100/280 (35%), Gaps = 16/280 (5%)

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A         +   + I     N+  DH+  H+T + Y  AK R+FE  L  +   +
Sbjct: 159 FLVAELSSYQLETIKYFRPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTD-YLV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  DD    ++  R+ +   ++      +    +    C I         +  +D     
Sbjct: 218 LNIDDPVVADMEHRSSSHILKISQKKAVENGAYYADGQCYIAKDGVAKFVIGNED----I 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   + N L    L  A+G+    +   + + H V  R E V T   G   Y D   
Sbjct: 274 HIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKT-IDGITFYNDSKA 332

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T+  ++ ++K + +      +++   G D+       M  +      +  + +   R E 
Sbjct: 333 TN--VDSVVKALESFDQ--QVILLAGGHDKMTPLEDFMELVKEKTKAVIFMGEAADRFET 388

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             K       G+       +  EA+    ++    D++++
Sbjct: 389 AAK-----EAGVKPIYRALSMKEAVEQGYKLAETGDIVLL 423


>gi|16078584|ref|NP_389403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309394|ref|ZP_03591241.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313719|ref|ZP_03595524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318643|ref|ZP_03599937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221322916|ref|ZP_03604210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|417327|sp|Q03522|MURD_BACSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|580932|emb|CAA78769.1| murD [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633891|emb|CAB13393.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484071|dbj|BAI85146.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 451

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 124/351 (35%), Gaps = 39/351 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++  + + ++ +     +   G   T++S   +         ++   
Sbjct: 112 SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVAS---EVAYHADGDEWIVTE 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS     G                     +       N+   H+DYH T++ Y  AK ++
Sbjct: 169 LSSFQLMGTHAF-----------------RPEISLILNVFDAHLDYHHTRENYEKAKQKV 211

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +      +  AI+  DD     + + A  A     SV    +     K   I    +  +
Sbjct: 212 YLHQTASDK-AIVNQDDETVVRLAE-AGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAIL 269

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +E         LPG   + N L A  +    G  +  V + L     V  R ++V T  
Sbjct: 270 PLE------EVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTT-V 322

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G + Y D   T+  +    K +        +++   G DR  G   +   +    A + 
Sbjct: 323 NGRKFYNDSKATN--ILATSKALSAFDKP--VILLAGGLDRGNGFDDLKPYMKHVKA-VL 377

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 378 TFGQTAPKLE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|317474538|ref|ZP_07933812.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909219|gb|EFV30899.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 460

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 123/364 (33%), Gaps = 39/364 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S      IG T+ +   +++              
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLFHQS-----HIGCTAFLGGISKNYGT----------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L SQ   +  +EA       H L          T    DH+D + T++AY  +  R 
Sbjct: 155 -NLLLSQASPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTREAYLES-FRH 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +  L+      II    A   +V       G RV +        H + +   + +  +  
Sbjct: 210 YTTLIQPGGALIIRKGLALQPDV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFIDF 264

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    +P    + N + A  L    G+    + + +     V  RF+F    
Sbjct: 265 VAPDTRINDIRLGVPIGINIENGVAAMALAHLNGVTDEEIKQGMASFRGVDRRFDFKIKT 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLAD 411
           SR      DYAH    +   +K++R +   + I  +F                 +L L D
Sbjct: 325 SR-LVFLSDYAHHPAEIAQSVKSVRELYQDKKITAIFQPHLYTRTRDFYKDFADSLSLLD 383

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+T+  P  E P        I   +  GI   I      E I   +      +VL+V 
Sbjct: 384 EVILTEIYPAREQPIPGVSSRLIYDNLRPGIEKCICP---KEDILNLLSK-KSVEVLIVL 439

Query: 466 GKGH 469
           G G 
Sbjct: 440 GAGD 443


>gi|52842822|ref|YP_096621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|62900494|sp|Q5ZSA3|MURD_LEGPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52629933|gb|AAU28674.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 447

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 139/385 (36%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           S  +  +TP+L  +  R+  +        L  +    ++A+TGT+GKS+V + V ++ + 
Sbjct: 72  SPGLALDTPVL--ERARQAGASIYGDIECLAREISAPVIAITGTNGKSTVTTLVGEMAKA 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G      G   T      D+                          +E SS  LD    
Sbjct: 130 AGFRVAVAGNIGTPVLDMLDDEHHY------------------DLWVLELSSFQLDL--T 169

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +  +  +  N+  DH+D H T +AY  AK R++          +   +D Y+  V  +
Sbjct: 170 YSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYRG----AKAVLFNREDVYT--VPHQ 223

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +  A  + +S G     +    +    N   +   +E         + G     NAL A 
Sbjct: 224 SCQADIKCISFGKDAPSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAAC 283

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A GI    +L  L+    +P R ++V      G I         +    +  I   
Sbjct: 284 ALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVGWINDSKGTNIGATISAINGIGGS 343

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G  IV+   G  +    + +   ++  +  I ++       ED +KI + +   +P  
Sbjct: 344 MQG-KIVLIAGGQGKGADFQELAQPVSEFVRSIVLI------GEDADKIESALAKVVP-V 395

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +   A+  A       DV+++
Sbjct: 396 VRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|262189738|ref|ZP_06048096.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
 gi|262034382|gb|EEY52764.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
          Length = 403

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 143/414 (34%), Gaps = 48/414 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS+A + Q+          I +V    + L+      +G      +AV GT GK++  
Sbjct: 2   VVVSTAINEQNPEIQAAREKRIPIVRRA-EMLAELMRFRHG------IAVAGTHGKTTTT 54

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V QI   +GL    +      S+       ++         ++       + +     
Sbjct: 55  ALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RILIAEADESDASFL----- 103

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      ++ +    TN+  DH+D +             F   LP    AI+  DD
Sbjct: 104 ----------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDD 153

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPG 308
              +E++ R      +V++ G+ +   + ++       + Q T+  +GK + D    +PG
Sbjct: 154 PVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPG 210

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHT 365
                NA  A  +     I    +L  +        RF+ +G   T +    +  DY H 
Sbjct: 211 RHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHH 270

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +++ +K  R      R++++F                  L+  D+ I+ D     E 
Sbjct: 271 PTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEK 330

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGH 469
           P  I       +   I    +I+ I              +L   D+++  G G 
Sbjct: 331 P--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGD 382


>gi|262037242|ref|ZP_06010724.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
 gi|261748714|gb|EEY36071.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
          Length = 447

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 131/400 (32%), Gaps = 56/400 (14%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP---ILVVDNTRK-----FLSLFASRLY 110
           +I Q         V      L  +S  I+   P    +V +  +K      L+   ++  
Sbjct: 54  YIGQVEEN-----VKDKGIDLFVYSTAIKECNPEYKYIVENGIKKIKRGELLAQLMNKFE 108

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G      +AV GT GK++ +S +         +    G    I S ++            
Sbjct: 109 G------IAVAGTHGKTTTSSMMSVAFLEKDPTIVVGGIIPEIQSNSKIGNSEYFIAEAD 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L                        IK      TN+  DH+++H T +    + 
Sbjct: 163 ESDNSFL-----------------------FIKPKYSVVTNVEPDHLEHHGTYENIKKSF 199

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            +  +     E  AI+  D      +     N      S+  +   I    +        
Sbjct: 200 EKFIDS---TEKLAILCKDCEDMSTL--NIKNKNIIWYSIKKEDVHIFATNITVKDGCTH 254

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   GK+  +F   +PGE  V N+L    L    G +   V E L +      R++ +
Sbjct: 255 YEVIKNGKNLGEFTLCIPGEHNVSNSLPVIYLADEAGCNMDTVKERLAQFKGANRRYQVI 314

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +  RI  DYAH    +++ ++  +    G + V+F                 +L  
Sbjct: 315 --YDKNLRIIDDYAHHPTEIKVTIEAAKATEKGNVTVIFQPHRYSRTKFFFDDFVTSLKK 372

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKG 443
           AD  I+       ED       EK+  +I +G+  + E+ 
Sbjct: 373 ADELILLPIYSAGEDNIYDVSSEKLAEKIGNGVKVYSEEE 412


>gi|168482914|ref|ZP_02707866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043724|gb|EDT51770.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 131/376 (34%), Gaps = 41/376 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GK++  + + ++   +G      G    I   A            L   LS 
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKDTLVMELSS 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               GV                           TNL   HIDYH     Y  AK  + + 
Sbjct: 171 FQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGAFSEYVAAKWNI-QN 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +      ++  +   +K++  +         ++         K   A     Q+    E
Sbjct: 213 KMTAADFLVLNFNQDLAKDLASKTEATVVPFSTLE--------KVDGAYLEDGQLYFRGE 264

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL    +    G+D+  + E L     V  R +FV  + +G 
Sbjct: 265 VVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVD-DIKGV 323

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + Y D   T+  +    K +        +V+   G DR      ++  I   L  + I+ 
Sbjct: 324 KFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVIL- 378

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
                 +  E+++         ++E  +  +A R A E+  + DV++++   + +  +  
Sbjct: 379 -----GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDMYA 432

Query: 477 NGEKKMSVDCDIIREI 492
           N E +  +  D + E+
Sbjct: 433 NFEVRGDLFIDTVAEL 448


>gi|167629674|ref|YP_001680173.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592414|gb|ABZ84162.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 599

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 125/379 (32%), Gaps = 25/379 (6%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
               G + + +V N  D   +  +A  +G   +V       +  SA   +   ++ V + 
Sbjct: 37  DCGKGDVLIPLV-NLTDPAGYAARAARKGVGVLV----LPDRTASAAANAAVAVIGVGSV 91

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R            +    I+AVTG++GK++    +  +   +G                 
Sbjct: 92  RDAYFRLVKAYRHRCKARIVAVTGSAGKTTTKEMIAAVLAEAGEVQKNW----------- 140

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                   P  +   L  L        V + A            +    G  T +G  H 
Sbjct: 141 ---RNYNGPYGIGYTLFRLRPHHTFGVVKIGAYIPNSIDFGARLVAPEVGVITCIGLGHA 197

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                 +     K +L   L PK+   ++  DD   + V      A  R + V  + + +
Sbjct: 198 AALGGGEGVRREKEKLLTHL-PKKGLLVLNGDDPGCRSVDLSRCQAPVRWVGVECEREDL 256

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF---QVYNALVAAGLCIAIGIDSALVLE 334
            L       ++      + G + +    LPG F    V +AL+AA +   +G+    +  
Sbjct: 257 SLWAERIQVHRDGTRFLLCGLEREIEVELPGFFGRPAVIDALLAAAVGDHMGLPPESIAS 316

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGD 393
            L K+   P RF  +    R   I   Y    +S+   L++   +   G+ + + G   +
Sbjct: 317 GLTKVEYTPRRFSPIRLPGRRLLIDATYNANPHSMSASLESAAKLAVEGKGLALLGTMSN 376

Query: 394 RDQGKRPIMGKIALDLADI 412
             +        I    A++
Sbjct: 377 LGEEAPEQHRAIGRRAAEL 395


>gi|148358649|ref|YP_001249856.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|296108261|ref|YP_003619962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280422|gb|ABQ54510.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|295650163|gb|ADG26010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 447

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 139/385 (36%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           S  +  +TP+L  +  R+  +        L  +    ++A+TGT+GKS+V + V ++ + 
Sbjct: 72  SPGLALDTPVL--ERARQAGASIYGDIECLAREISAPVIAITGTNGKSTVTTLVGEMAKA 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G      G   T      D+                          +E SS  LD    
Sbjct: 130 AGFRVAVAGNIGTPVLDMLDDEHHY------------------DLWVLELSSFQLDL--T 169

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +  +  +  N+  DH+D H T +AY  AK R++          +   +D Y+  V  +
Sbjct: 170 YSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYSG----AKAVLFNREDVYT--VPHQ 223

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +  A  + +S G     +    +    N   +   +E         + G     NAL A 
Sbjct: 224 SCQADIKCISFGKDAPSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAAC 283

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A GI    +L  L+    +P R ++V      G I         +    +  I   
Sbjct: 284 ALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVGWINDSKGTNIGATISAINGIGGS 343

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G  IV+   G  +    + +   ++  +  I ++       ED +KI + +   +P  
Sbjct: 344 MQG-KIVLIAGGQGKGADFQELAQPVSEFVRSIVLI------GEDADKIESALAKVVP-V 395

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +   A+  A       DV+++
Sbjct: 396 VRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|50122736|ref|YP_051903.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|59798236|sp|Q6D0I4|MURC_ERWCT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49613262|emb|CAG76713.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 486

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 144/422 (34%), Gaps = 53/422 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVTSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DDA  +E++ R       + + G+     + +        +   T+  + K   +    
Sbjct: 231 IDDAVIRELLPRVGR---HITTYGFSDDADVRVAGYRQTGAQGHFTLERKDKTLLNVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR-- 357
            PG     NA  A  +    GID   +L  LE+      RF+F+G       N + G   
Sbjct: 288 APGRHNALNAAAAVAVATDEGIDDEAILRALERFQGTSRRFDFLGEYPLELVNGQSGTAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      R++++F                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLML 407

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR--------TAIEMLNKQ-DVLVVAGK 467
           D     E P  I       +   I    +I+ I           +    +  D+++V G 
Sbjct: 408 DVYSAGESP--IPGADSRSLCRTIRGRGKIDPILVTDMDTLPELLSQALRGEDLILVQGA 465

Query: 468 GH 469
           G+
Sbjct: 466 GN 467


>gi|300777756|ref|ZP_07087614.1| cyanophycin synthase (L-arginine-adding) [Chryseobacterium gleum
           ATCC 35910]
 gi|300503266|gb|EFK34406.1| cyanophycin synthase (L-arginine-adding) [Chryseobacterium gleum
           ATCC 35910]
          Length = 876

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 134/354 (37%), Gaps = 28/354 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + +G   +++G T++   + Q+  L+         A   L    V    +E + 
Sbjct: 499 LISHIVKSNG---YRVGFTTSDGIYIQNTMLSKGDTTGPLSAEFILKDPTVEFAVLETAR 555

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   +   G  TN+  DH+  +   T +     K R+  + + K   +++ AD
Sbjct: 556 GGILRSGLGFSQCDIGVLTNIEEDHLGMNDIHTLKDLTRVK-RVVLDSVKKSGWSVLNAD 614

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTIS--------VEG 297
           + YS +++    ++   + S+        KF    K+  ++ +  VTI          + 
Sbjct: 615 NEYSMKIVNDL-DSNVAIFSMDENNPHIVKFAKEGKITCVYEEGFVTIKKGDWKIRIGKA 673

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRG 355
           KDF         F + N L A+      G     +   L                   + 
Sbjct: 674 KDFPITMEGKARFMIENVLAASLASYLYGFGIEDISNSLRTFIPSAQLTPGRLNVFKFKN 733

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ +D+AH  +  E I   ++ + S + I +    GDR        GKIA  + D  I+
Sbjct: 734 FKVLIDFAHNPSGYEAIEDYLKNVESTKKIGIISGVGDRRDNDIRECGKIAGRMFDHIII 793

Query: 416 TDD-NPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVL 462
            ++ + R    ++I   II G+        +      IEA++ AI M  +   +
Sbjct: 794 RNEKHLRGRTEDEINGLIIEGMQSAGKDVSYEIIPKEIEALKHAIGMAEEGTFI 847


>gi|254362461|ref|ZP_04978569.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
 gi|153094053|gb|EDN74965.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
          Length = 475

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 148/428 (34%), Gaps = 51/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + IA GA  +VVS+A    +          I V+    + L+      +G    
Sbjct: 69  GHQ--AENIA-GASVVVVSTAIDETNPEIIAAREARIPVIRRA-EMLAEIMRFRHG---- 120

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  + +  I   + L    +      S+          +  YL   ++
Sbjct: 121 --IAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTG---KNAHLGASRYL---IA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D +             F 
Sbjct: 173 EADESDASFL---------------HLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFL 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++ ADD     VM+ A   G +V++ G+ +     ++       ++  T+ 
Sbjct: 218 RNLPFYGLAVMCADDET---VMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVV 274

Query: 295 VE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
              G+  D L  +PG     NA  A  +    GI +  +L  L        RF+ +G+  
Sbjct: 275 CPSGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI 334

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDL 409
             +    +  DY H    +++ ++  R+   G+ +V +F                  L  
Sbjct: 335 RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVLSK 394

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQD 460
            D  I+ D     E P  I       +   I    +++ I             +++   D
Sbjct: 395 VDALILLDVYAAGEAP--IVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQDGD 452

Query: 461 VLVVAGKG 468
           +++  G G
Sbjct: 453 LILAQGAG 460


>gi|299139512|ref|ZP_07032686.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598440|gb|EFI54604.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 144/411 (35%), Gaps = 51/411 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-------LSLFASRLYGKHPEN 116
           +  G+  ++      L   S  +  +TP L     R         L L A  L G+    
Sbjct: 55  VEAGSHGLLTFRRQDLIVVSPGVPMSTPEL--KQVRAMGMHIIGELELGAQFLQGE---- 108

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  + + +I + +G  +   G         +    +TP    +      
Sbjct: 109 VVGITGSNGKTTTTTLMGEIFKAAGRPTLVGGNIG--KPVTELVGESTPEAWSV------ 160

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS  L+   ++  +       N+  DH+D H   + Y  AK R+  E
Sbjct: 161 ----------LEVSSFQLE--TVESFRPRIAMVLNITPDHLDRHGNFENYAAAKARI-TE 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTIS 294
               E   I+ A+D  ++ V  +               QG F+H + +    ++      
Sbjct: 208 FQTAEDFLILNAEDKPTQMVAAKTKAQIYWFSPRRQVKQGAFVHGETIFFTPSEGA---K 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E        PL G   V N L A       G+ S  +   +     V  R EFV     
Sbjct: 265 PEPVMPVAEIPLAGAHNVENVLAAVCAARLAGVASETIRAAVAAFKAVEHRLEFV-REHN 323

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G R Y D   T+  ++  +K +        +++ G   D D     +MG +  +   + I
Sbjct: 324 GVRYYNDSKATN--VDATVKAVEAFAGRIYLILGGKDKDSDY---AVMGPLLRERVKMVI 378

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                      EKI  ++  G+           A+  A E     D +++A
Sbjct: 379 TI-----GSAAEKIEHQL-AGVVKIERAETMDRAVALAHEAAVAGDTVLLA 423


>gi|238786723|ref|ZP_04630524.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
 gi|238725091|gb|EEQ16730.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
          Length = 491

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 138/423 (32%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRYRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  ++         
Sbjct: 231 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQDGPQGHFTLKRLDKPLMTVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGRI- 358
            PG     NA  A  +    GI    +L  L        RF+F+G       N + G + 
Sbjct: 288 APGRHNALNAAAAVAVATEEGIADDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSVM 347

Query: 359 -YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DY H    ++  +K  R      RI++VF                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATVKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQVDVLLML 407

Query: 417 DDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D     E P            IR     G    I   +         ++LN  D+++V G
Sbjct: 408 DVYAAGEPPIPGADSRSLCRTIRN---RGKLDPILVSDSETVPEVLAQVLNGNDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|221231502|ref|YP_002510654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
 gi|254766058|sp|B8ZMZ6|MURD_STRPJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|220673962|emb|CAR68471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
          Length = 450

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + + ++   +G      G    I   A            L   L
Sbjct: 112 APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKDTLVMEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     GV                           TNL   HIDYH +   Y  AK  + 
Sbjct: 169 SSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVAAKWNI- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +      ++  +   +K++  +         +   +       +   ++ + +V ++
Sbjct: 211 QNKMTAADFLVLNFNQDLAKDLTSKTEATVVPFST--LEKVDGAYLEDGQLYFRGEVVMA 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG   V NAL    +     +D+  + E L     V  R +FV  + +
Sbjct: 269 AN------EIGVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVD-DIK 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +V+   G DR      ++  I   L  + I
Sbjct: 322 GVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVI 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       +  E+++         ++E  +  +A R A E+  + DV++++   + +  +
Sbjct: 378 L------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDM 430

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E +  +  D + E+
Sbjct: 431 YANFEVRGDLFIDTVAEL 448


>gi|56459548|ref|YP_154829.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR]
 gi|81363510|sp|Q5R0M0|MURC_IDILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56178558|gb|AAV81280.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR]
          Length = 490

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/426 (18%), Positives = 140/426 (32%), Gaps = 57/426 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VVSSA    +          + VV    + L+      +G      +AV GT GK
Sbjct: 82  GASVVVVSSAIKADNAELVAAHQLRVPVVRRA-EMLAELMRFRHG------IAVAGTHGK 134

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  I   +G       PT  I                L  A S        ++ 
Sbjct: 135 TTTTSLVASIFAEAGRD-----PTFVIGG-------------LLNSAGSNARLGNSKYLI 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA            ++ +    TN+  DH+D ++            F   LP    A++
Sbjct: 177 AEADESDAS---FLHLQPMVAIVTNIEADHMDTYEGDFNKLLDTYVEFLHNLPFYGLAVM 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLF 304
             DD    +++ R      + ++ G+ +   +         ++   TI  +G K  D   
Sbjct: 234 CVDDPVVSDLIPRLGR---QTMTYGFSEAADVRAIDYKQTASESCFTILRKGLKPLDVCL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGG 356
            LPG+  V NAL A  +    GI+   +   L K   +  RF+  G        +N   G
Sbjct: 291 NLPGKHNVLNALAAVAVATDEGINDEAIKSALNKFEGIGRRFQHYGNFAISDKDSNKEPG 350

Query: 357 RI--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            +    DY H  + +   ++  R      R+++ F                  L   D+ 
Sbjct: 351 EVMLVDDYGHHPSEVAATIQAAREGWPERRLVMAFQPHRYSRTRDLYEDFVNVLSQVDVL 410

Query: 414 IVTDDNPRSEDP--EKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++ +     E P        +   I               +  E + + +      D+L+
Sbjct: 411 LMLEVYSAGETPVSGADSRSLCRSIRQRGQIDPVYVATVDDMPEVLESVLA---PGDLLL 467

Query: 464 VAGKGH 469
             G G+
Sbjct: 468 TQGAGN 473


>gi|315225589|ref|ZP_07867398.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
 gi|314944406|gb|EFS96446.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
          Length = 444

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 151/417 (36%), Gaps = 48/417 (11%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSG 141
           S  I    PI+   + +    +       ++ ++++  +TG++GK++       I + +G
Sbjct: 69  SPGIPDKAPIIKKVHEKGIAVISEIEFASQYTDSLIVGITGSNGKTTTTLLTYHIFKEAG 128

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           L   Q+G    I                       ++++   +  +E SS  LD   ++ 
Sbjct: 129 L---QVGLGGNIG----------------YSFAELVATENPPYYVLEISSFQLD--GIEH 167

Query: 202 IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    N+  DH+D +    + Y N+K R+      +    I  ADD    + +   
Sbjct: 168 FAPHIAVLLNITPDHLDRYDYKFENYINSKFRI-AMNQTENDYLIYDADDEVITQWLS-T 225

Query: 261 HNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           H    +++         QG F+   K+  +   Q   I VE         L G+  + N 
Sbjct: 226 HTIKSKLIPFSIEKELPQGAFLKDNKIYIMLENQTTEIDVE------EISLRGKHNIKNT 279

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A+     + I +  + E L+     P R E V        +    A   NS+      
Sbjct: 280 MAASVAARLVNIRNNSLRESLKGFKGAPHRLEEVKVVDGVTYVNDSKATNVNSV---FYA 336

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           + TI +  + +V   G D+      ++  +   +  I  +  DN        I     + 
Sbjct: 337 LDTIKTPIVWIV--GGQDKGNDYNSLLPYVHEKVRAIVCLGVDNT------PIIQSFYNT 388

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           I   +E  +  EA++ A     + D ++++     +  +  N E++  +    ++++
Sbjct: 389 IGTLVETRSMDEAVKLAQGFAQEGDTVLLS-PACASFDLFKNYEERGDLFKAAVQKL 444


>gi|218131847|ref|ZP_03460651.1| hypothetical protein BACEGG_03469 [Bacteroides eggerthii DSM 20697]
 gi|217986150|gb|EEC52489.1| hypothetical protein BACEGG_03469 [Bacteroides eggerthii DSM 20697]
          Length = 460

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 123/364 (33%), Gaps = 39/364 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S      IG T+ +   +++              
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLFHQS-----HIGCTAFLGGISKNYGT----------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L SQ   +  +EA       H L          T    DH+D + T++AY  +  R 
Sbjct: 155 -NLLLSQTSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTREAYLES-FRH 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +  L+      II    A   +V       G RV +        H + +   + +  +  
Sbjct: 210 YTTLIQPGGALIIRKGLALQPDV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFIDF 264

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    +P    + N + A  L    G+    + + +     V  RF+F    
Sbjct: 265 VAPDTRINDIRLGVPIGINIENGVAAMALAHLNGVTDEEIKQGMASFRGVDRRFDFKIKT 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLAD 411
           SR      DYAH    +   +K++R +   + I  +F                 +L L D
Sbjct: 325 SR-LVFLSDYAHHPAEIAQSVKSVRELYKDKKITAIFQPHLYTRTRDFYKDFADSLSLLD 383

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+T+  P  E P        I   +  GI   I      E I   +      +VL+V 
Sbjct: 384 EVILTEIYPAREQPIPGVSSRLIYDNLRPGIEKCICP---KEDILNLLSK-KSVEVLIVL 439

Query: 466 GKGH 469
           G G 
Sbjct: 440 GAGD 443


>gi|153834370|ref|ZP_01987037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi HY01]
 gi|148869218|gb|EDL68240.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi HY01]
          Length = 452

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 124/359 (34%), Gaps = 27/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D   ++V++R      +     + G     +    + +  +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQSLQDVIERGCWTEKQ-----FSGADGDWQAHKLVVDGSKFE 260

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +S++G+    + + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VSLQGEKVGIVDWDLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
             +G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 321 E-QGVTVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      ++I  +     P F++       +   +E     D ++V   G
Sbjct: 380 ADEVFLFQPDSIDWSVQEIADQCKQ--PAFVDAEMDSF-VAKIVERAQPGDQILVMSNG 435


>gi|148989060|ref|ZP_01820460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925557|gb|EDK76634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
          Length = 434

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 148/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 33  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 92

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A           
Sbjct: 93  ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKD 146

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH +   Y  
Sbjct: 147 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVA 189

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         ++         K   A    
Sbjct: 190 AKWNI-QNKMTAADFLVLNFNQDLAKDLTSKTEATVVPFSTLE--------KVDGAYLED 240

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +     +D+  + E L     V  R +F
Sbjct: 241 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQF 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 301 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 355

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 356 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PA 408

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 409 NASWDMYANFEVRGDLFIDTVAEL 432


>gi|213646586|ref|ZP_03376639.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 479

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 145/434 (33%), Gaps = 61/434 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+ +   + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  D       PG     NA  A  +    GID   +L  LE       RF+F+G   
Sbjct: 276 RQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R       ++++F                
Sbjct: 336 LEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK- 458
             L   D  ++ D  P  E P  I       +   I    +I+ I          ML   
Sbjct: 396 NVLTQVDALLMLDVYPAGEAP--IPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPV 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LTGNDLILVQGAGN 467


>gi|213963298|ref|ZP_03391555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
           sputigena Capno]
 gi|213954160|gb|EEB65485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
           sputigena Capno]
          Length = 447

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 128/352 (36%), Gaps = 39/352 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GK++      QI + +GL   Q+G    I                       
Sbjct: 104 IVGITGSNGKTTTTLLTHQIFKDAGL---QVGLGGNIG----------------YSFAEL 144

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFE 235
           ++++   +  +E SS  LD   ++          N+  DH+D +    + Y  +K R+  
Sbjct: 145 VATENPPYYVLEISSFQLD--GIEHFAPHIAVLLNITPDHLDRYDYKFENYIASKFRI-A 201

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVT 292
               +    I  ADD   +E ++  H    +++    + +  +   LK        +  T
Sbjct: 202 MNQTENDYLIYDADDPVIEEWLQN-HILKVKLIPFSIEKELPYGAFLKDNKIHIMLENQT 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 D +    L G+  + N + A+     + I +  + + L+    V  R E V   
Sbjct: 261 AETTEIDVE-EISLRGKHNIKNTMAASVAARLVNIRNNSLRDSLKGFKGVDHRLEEVKVV 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                +    A   NS+      + TI +  + +V   G D+      ++  +   +  I
Sbjct: 320 EGVTYVNDSKATNVNSV---YFALDTIKTPIVWIV--GGQDKGNDYNALLPYVHEKVKAI 374

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN      E I     +     IE  +  EA+R A +   + D +++
Sbjct: 375 VCLGVDN------EPILRSFSNSGKEMIETQSMDEAVRIAKKFATEGDTVLL 420


>gi|218134561|ref|ZP_03463365.1| hypothetical protein BACPEC_02464 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989946|gb|EEC55957.1| hypothetical protein BACPEC_02464 [Bacteroides pectinophilus ATCC
           43243]
          Length = 471

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 127/415 (30%), Gaps = 44/415 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPENILAVT---GTSGKSS 128
           ++    L  ++A I  + P       R  + + A   L G+   N        GT GK++
Sbjct: 73  ITPDIDLVVYTAAIHPDNPE-YAQAVRAGIPMMARAELLGQIMANYKTAVNIAGTHGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S + +I   +  +   I     +     + R+                   VT     
Sbjct: 132 TTSMLSEIL-LAADADPTISVGGILKDIGGNIRIGRSDLF-------------VTEACEY 177

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +S                   N+  DH+D+ +       A  R F E LP+    II +
Sbjct: 178 TNSF-------LSFNPTMNIILNVKEDHLDFFKDLADI-RASFRRFVERLPEGGTLIINS 229

Query: 249 DDAYSKEVMKRAHNAGCRV------LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           D    +   K  +     V       +   +G        C     +       G++   
Sbjct: 230 DIEDYEYFCKGLNVKVITVGSDPDKSTYSARGIAYDDLGRCHYTLLKNGEPYGIGEESSI 289

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   VYN+L A    + + I  A + + L + +    RFE  G    G  +  DY
Sbjct: 290 DLMVPGIHNVYNSLAAIAAALELDIPIAAIKKGLAEFYGTNRRFERKGV-FNGVTVVDDY 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH  + ++  L          + V F                  L  AD  I+ D     
Sbjct: 349 AHHPDEIKATLAAAGHYPHKTLWVAFQPHLYSRTKLLLDRFAAELSAADKVILADIYAAR 408

Query: 423 EDP------EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E        E +  +I        +    + IE  +   +     D+L+  G G 
Sbjct: 409 ETNTYGISSEDLMNKIKALGTECYYFHTFDEIE--KFLQKNCINGDLLITMGAGD 461


>gi|126461548|ref|YP_001042662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|158513433|sp|A3PHS4|MURD_RHOS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|126103212|gb|ABN75890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 465

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 104/326 (31%), Gaps = 35/326 (10%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           G   +V S      Y   +          + V ++   F   FA+R +    +   ++ V
Sbjct: 66  GVALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+  + +  I   +G  +   G                         L    ++
Sbjct: 126 TGSNGKSTTTALIHHILSEAGRPTQMAGNIG-------------------RGVLDLDPAR 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 167 DGEVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---- 294
            +   +  D+     +  +        RV+ +    K                       
Sbjct: 225 RAVIGV--DEPEGLYLAGQLSVAPEDDRVIRISAGQKLERFGWSVFARKGFLAEWRKGRQ 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   D   +  LPG     NA  A   C  +G+    +   L     +P R + VG    
Sbjct: 283 MASIDLRAMPGLPGAHNHQNACAAYAACRTLGLAPRQIEAALASFAGLPHRSQTVGEKGG 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT 380
              +    A   +S    L+    I 
Sbjct: 343 VRFVNDSKATNVDSAAKALQAFPKIR 368


>gi|126650748|ref|ZP_01722964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
 gi|126592413|gb|EAZ86431.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
          Length = 744

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 118/357 (33%), Gaps = 23/357 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++GK++  +FV  I  +           +T     +       S        +
Sbjct: 387 PIIAITGSAGKTTTKAFVGSILSKQWNVFESKDYWNTTEHTKKHKEEINDSHQ------A 440

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLF 234
            +   G+ +        G+  +    I+      TN+G  H+       +    AK  L 
Sbjct: 441 VVLEYGMAYP-------GIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELI 493

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
              + ++   I+  DD  S+ +         ++L+VG +         +          +
Sbjct: 494 HG-MDQQGLLILNKDDDNSRFL--ETQQFKGKMLTVGIKSDADYRAYDLQYKDIGMSFKM 550

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + G++ +   P+ GE  VYNAL A  +   +G     +   L      P R        
Sbjct: 551 KLHGQEIELYIPILGEHHVYNALNAVAVADYLGFSPLDIQAGL-NFKKPPRRLTIYNLRD 609

Query: 354 RGGRIYVDYAH-TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               +  D  H     +   +  +  I   R + + G   +    +     K+   + + 
Sbjct: 610 D-ITVIDDTVHSHPQGVRAAIDVLTNIAKKRKVAIIGQMRELGVLREEEYRKVGEYIYEE 668

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEML-NKQDVLVVAGK 467
            I           E   A I  G+ P  +      +A+   ++ L    D ++V G 
Sbjct: 669 GIDEFITYGFRTDEMSNAAIEMGMDPSRVHHFINKDALHALLDKLIKPHDTILVKGA 725


>gi|238760097|ref|ZP_04621247.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
 gi|238701716|gb|EEP94283.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
          Length = 495

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 139/423 (32%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 136 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 188 -------------HLQPMVAIVTNIEPDHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  ++         
Sbjct: 235 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLN 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G   
Sbjct: 292 APGRHNALNAAAAVAVASEEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAM 351

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI++VF                  L   D+ ++ 
Sbjct: 352 LVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQVDVLLML 411

Query: 417 DDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D     E P            IR     G    I   +         ++LN  D+++V G
Sbjct: 412 DVYAAGEPPIPGADSRSLCRTIRN---RGKLDPILVSDSDTVPEVLAQLLNGDDLILVQG 468

Query: 467 KGH 469
            G+
Sbjct: 469 AGN 471


>gi|50083547|ref|YP_045057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           sp. ADP1]
 gi|49529523|emb|CAG67235.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ADP1]
          Length = 455

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 147/449 (32%), Gaps = 82/449 (18%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ--G---------AEAIVVSSAYS--LQD 81
           +DSR                 GH  IPQ +    G         AE I++S   +  L +
Sbjct: 42  TDSRETPP-------------GHDQIPQDVQTSFGQLDTELLLQAEEIILSPGLAPQLPE 88

Query: 82  FSATIRSNTPIL---VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
               I    P++    V   R+   +            I+A+TG++ KS+V +   Q+ +
Sbjct: 89  IQQAIAQGIPVIGDIQV--LRRATQV-----------PIVAITGSNAKSTVTTLFGQMAK 135

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G      G             L    P  L   LS    +  +H              
Sbjct: 136 DAGKRVAVGGNLGRPG-----LDLLKDEPELLVLELSSFQLETTSH-------------- 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +        N+  DH+D H     Y  AK R+F+ +       +   DD+ ++ ++ 
Sbjct: 177 ---LNAEVAVILNMSEDHLDRHGDMLGYHQAKHRIFQGV----KKVVYNRDDSLTRPLVP 229

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
            +        S G     I    V    +          +        + G   + NAL 
Sbjct: 230 DSTPMQ----SFGLNAPDIKQYGVLREDDGTMWLARGRTRLIKSSELYIQGTHNIANALA 285

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMILKN 375
              L  AIG+    +LE L++   +  R E+V T     R Y D   T+   +L  I   
Sbjct: 286 CLALGEAIGLPVESMLETLKQFKGLEHRCEYVKT-VNDVRYYNDSKGTNVGATLAAIDGL 344

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
              I   +  V+   GG        ++ +        AI+       ED ++I   +   
Sbjct: 345 GAAIEPKQGKVIVILGGQGKGQDFSLLRQSVEKYVKAAILI-----GEDAQQIEQALTE- 398

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +      +A+  A +    +DV+++
Sbjct: 399 TTQLVHASTLKDAVTQAQQYAQPEDVVLL 427


>gi|188026372|ref|ZP_02961838.2| hypothetical protein PROSTU_03908 [Providencia stuartii ATCC 25827]
 gi|188020136|gb|EDU58176.1| hypothetical protein PROSTU_03908 [Providencia stuartii ATCC 25827]
          Length = 447

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 116/364 (31%), Gaps = 36/364 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +    + +     SP ++ +
Sbjct: 89  PERWVLAVAGTHGKTTTAGMLAWILEDCGYKPGFL--IGGVPGNFEVSAQLGESPFFVIE 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D  +  +A       
Sbjct: 147 ADEYDCAFFDKRSKFVHYS------------PRTLVLNNLEFDHADIFENLEAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P      +   D   K+VM            VG  G++   K     H+  Q  
Sbjct: 195 LV-RIVPASGKIFMPDSDNNLKQVMTM--GCWSEQEFVGEHGEWQAKK---LNHDGSQFE 248

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + +   +  +   G   + NAL+A      +G+ +      L K      R E  G 
Sbjct: 249 VYYQQQRVGEVNWSQVGNHNIQNALMAIAAAHHVGVPAKEACFALGKFINARRRLELRGV 308

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALD 408
              G  +Y D+AH   ++   L+ +R+   G  RI+ V          G        AL 
Sbjct: 309 EY-GVSVYDDFAHHPTAILATLEALRSKVGGTSRILAVLEPRSNTMKLGVNKSDIAPALG 367

Query: 409 LADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVV 464
            AD   +         P  I     EI             I+A+    IE     D ++V
Sbjct: 368 RADEVFLFQ-------PSNIPWMVTEIAEKCVQPARWSGDIDALAQMVIETAQPGDHILV 420

Query: 465 AGKG 468
              G
Sbjct: 421 MSNG 424


>gi|167614206|gb|ABZ89709.1| UDP-N-acetylmuramate--L-alanine ligase [Buchnera aphidicola]
          Length = 476

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 152/436 (34%), Gaps = 53/436 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            Q I  GA+     S  ++Q+      S+ I S  P ++         L  + +     +
Sbjct: 57  KQLIHLGAKIYFKHSKKNIQNIDFIIKSSAILSTNPEIIYAKKNNIPILLRAEMLEILMQ 116

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLA 171
               +A++GT GK++  S +  I   SGL    I  G   +I+S                
Sbjct: 117 FKYGIAISGTHGKTTTTSIIADIFIESGLDPTIINGGIIKSINS---------------H 161

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L Y     V     +AS           +    G  TN+  DH+D++           
Sbjct: 162 AKLGYSRYFIVEADESDAS--------FLYLNPKIGIITNIEDDHMDHYDNNFIKLKQAF 213

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
             F + +P    AI+  D+    +++       C++L+ G+ +    H+           
Sbjct: 214 LTFLKKIPLNGTAIVCIDNDAICDILPYIK---CKILTYGFNKNADFHIYSYKQDGFIGY 270

Query: 291 VTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + I ++ +   +    +PG+    NA  A  L I   I    ++  L+       RFEF+
Sbjct: 271 LQIIIKHQIKLNITLNIPGKHNALNATAAVVLAIHEKIKHYNIIASLKNFQGTCRRFEFL 330

Query: 350 G--------TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRP 400
           G           +   +  DY H    L   +  IRT   +  +I++F            
Sbjct: 331 GKYSIKKNIIKRQPTMLIDDYGHHPTELSETINTIRTGWPNNNLIMIFQPHRYTRTHNLY 390

Query: 401 IMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI 453
                 L   D+ ++ +    +E      D   +  +I      +I    +    + T I
Sbjct: 391 HDFVKILSKVDVLLILNVYSANEKYILGADSFSLYNDIKKCKKKYIYFIPDHNLILDTLI 450

Query: 454 EMLNKQDVLVVAGKGH 469
             LN  D++++ G G+
Sbjct: 451 PRLNGNDIILIQGAGN 466


>gi|282850404|ref|ZP_06259783.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
 gi|282579897|gb|EFB85301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
          Length = 456

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 139/399 (34%), Gaps = 44/399 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + IV+S   SL            I VV        +            I+AVTGT+GK
Sbjct: 68  GVDCIVISPGISLDIPIVKAAQARGIDVVSEVELAYEV--------SKSPIVAVTGTNGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + + ++ + SG     +     I     +   + P+  +L   LS           
Sbjct: 120 TTTTTLLTKVLEGSGKP---VHVGGNIGDSLSEVAYSMPAGGFLVAELS----------- 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                       +   + I     N+  DH+  H+T + Y  AK R+FE  L  +   ++
Sbjct: 166 ------SYQLETIKYFRPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTD-YLVL 218

Query: 247 YADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD    ++  RA +   ++      +    +    C I         +  +D      
Sbjct: 219 NIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGQCYIAKDGVAKFVIADED----IH 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + N L    L  A+G+    +   + + H V  R E V T   G   Y D   T
Sbjct: 275 IPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKT-IDGITFYNDSKAT 333

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +  ++ ++K + +      +++   G D+       M  +      +  + +   R E  
Sbjct: 334 N--VDSVVKALESFDQ--QVILLAGGHDKMTPLEDFMELVKEKTKAVIFMGEAADRFETA 389

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            K       G+       +  EA+    ++    D++++
Sbjct: 390 AK-----EAGVKLIYRALSMKEAVGQGYKLAETGDIVLL 423


>gi|229823042|ref|ZP_04449111.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271]
 gi|229787481|gb|EEP23595.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271]
          Length = 443

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 124/369 (33%), Gaps = 65/369 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G  GK+S    +    +                                   LSYL
Sbjct: 107 IAVSGCHGKTSTTGLLAHTLKHLAP-------------------------------LSYL 135

Query: 178 SSQGVTHVSVEASSHGLD--QHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              G  +    A+  GL+  ++R   +  +      TN+  DH DY  + +  F+A    
Sbjct: 136 IGDGTGYGQESANYFGLEACEYRRHFLSYEPDYAIITNVDFDHPDYFTSIEDVFSA---- 191

Query: 234 FEELLPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
           F     + + A+I   +DAY +++      A   V   G+     ++   +    +    
Sbjct: 192 FTSFAGQTTKAVIACGEDAYLRQL-----EAPVPVYYYGFDSNSTVYATNIERTQDGSDF 246

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            ++ EGK    F  P  G+  + NAL    +    G  +  + ++L     V  RF    
Sbjct: 247 DVTFEGKFLGRFHVPTYGKHNILNALAVITVLTLEGFPADAIAQNLATFTGVKRRFSVKT 306

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  I  DYAH  + ++  +   +      R I VF                 +L+L
Sbjct: 307 VGDL--TIIDDYAHHPSEIKATIDATKQRYPDKRCIAVFQPHTFSRTVALLNEFAESLNL 364

Query: 410 ADIAIVTDD-NPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-----QDVL 462
           AD   + D  N   E   ++   ++   I   +E  +         E L+       DV+
Sbjct: 365 ADQVYLCDIFNSAREQSGEVTIQDLAALIDQEVEIIS--------SEHLSPLMQYKDDVI 416

Query: 463 VVAGKGHET 471
           V  G G   
Sbjct: 417 VFMGAGDVD 425


>gi|269798175|ref|YP_003312075.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
 gi|269094804|gb|ACZ24795.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
          Length = 456

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 104/292 (35%), Gaps = 16/292 (5%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS ++        + A         +   + I     N+  DH+  H+T + Y  AK R+
Sbjct: 147 LSEVAYSMPADGFLVAELSSYQLETIKHFRPIGAIMLNITPDHLARHKTMENYIAAKERI 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVT 292
           FE  L  +   ++  DD    ++  RA +   ++      +    +    C I       
Sbjct: 207 FENQLSTD-YLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGKCYIAKDGVAK 265

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  +D      +PG   + N L    L  A+G+    +   + + H V  R E V T 
Sbjct: 266 FVIADED----IHIPGSHNIENILTVIALSYALGVPVETIHRIISEFHGVEHRLERVKT- 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G   Y D   T+  ++ ++K + +      +++   G D+       M  +      +
Sbjct: 321 IDGITFYNDSKATN--VDSVVKALESFDQ--QVILLAGGHDKMTPLEDFMELVKEKTKAV 376

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             + +   R E   K       G+       +  +A+    ++    D++++
Sbjct: 377 IFMGEAADRFETAAK-----KAGVKPIYRALSMKDAVEKGYKLAETGDIVLL 423


>gi|126640338|ref|YP_001083322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ATCC 17978]
          Length = 435

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 126/354 (35%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 93  PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 133

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 134 LLKDQP-ELLVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQ 190

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
                    +   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 191 G----AKKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDADGTLWLACG 242

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R E+V T   
Sbjct: 243 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKT-VH 301

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 302 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFSPLRSSIEKYAK 360

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+         +DV+++
Sbjct: 361 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 407


>gi|54298605|ref|YP_124974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Paris]
 gi|62900489|sp|Q5X1S4|MURD_LEGPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53752390|emb|CAH13822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Paris]
          Length = 447

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 138/385 (35%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           S  +  +TP+L  +  R+  +        L  +    ++A+TGT+GKS+V + V ++ + 
Sbjct: 72  SPGLALDTPVL--ERARQAGASIYGDIECLAREISAPVIAITGTNGKSTVTTLVGEMAKA 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G      G   T      D+                          +E SS  LD    
Sbjct: 130 AGFRVAVAGNIGTPVLDMLDDEHHY------------------DLWVLELSSFQLDL--T 169

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +  +  +  N+  DH+D H T +AY  AK R++          +   +D Y+  V  +
Sbjct: 170 YSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYRG----AKAVLFNREDVYT--VPHQ 223

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +     + +S G     +    +    N   +   +E         + G     NAL A 
Sbjct: 224 SCQTDIKCISFGKDAPSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAAC 283

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A GI    +L  L+    +P R ++V      G I         +    +  I   
Sbjct: 284 ALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVGWINDSKGTNIGATISAINGIGGS 343

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G  IV+   G  +    + +   ++  +  I ++       ED +KI + +   +P  
Sbjct: 344 MQG-KIVLIAGGQGKGADFQELAQPVSEFVRSIVLI------GEDADKIESALAKVVP-V 395

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +   A+  A       DV+++
Sbjct: 396 VRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|190149288|ref|YP_001967813.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262601|ref|ZP_07544231.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470255|sp|B3GZK9|MURC_ACTP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189914419|gb|ACE60671.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872024|gb|EFN03738.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 475

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 156/445 (35%), Gaps = 56/445 (12%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R  +AG  +F+        GH    + +A GA  +V SSA    +          I V+ 
Sbjct: 58  RLAEAGAKVFI--------GHQ--AENVA-GASVVVASSAIDDSNPEVRAAKEARIPVI- 105

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              +   + A  +  +H    +AV GT GK++  + +  I   + L    +      S+ 
Sbjct: 106 ---QRAQMLAEIMRFRHG---IAVAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSAG 159

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                    +  YL   ++       + +                ++ +    TN+  DH
Sbjct: 160 ---KNAHLGASRYL---IAEADESDASFL---------------HLQPMVSVVTNIEPDH 198

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +D +        A    F   LP    A++ ADD     VM+ A   G +VL+ G+  K 
Sbjct: 199 MDTYGGDFEQMKATYVKFLRNLPFYGLAVMCADDET---VMEIAPQVGRQVLTYGFSEKA 255

Query: 277 IHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +  +             +   G+  D L  +PG+    NA  A  +    GI +  +L 
Sbjct: 256 DYRIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNALNATAALAVAKEEGIANEAILA 315

Query: 335 HLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            L        RF+ +G+    +    +  DY H    +++ +K  R+   + R++++F  
Sbjct: 316 ALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARSGWENKRVVMIFQP 375

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKG 443
                           L   D  I+ +     E P      + +   I + G    I   
Sbjct: 376 HRYSRTRDLFDDFVQVLSQVDALIMLEVYAAGEAPIVGADSKALCRSIRNLGKVDPILVS 435

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  +      +++   D+++  G G
Sbjct: 436 DTDQLGEVLDQIIQDGDLILAQGAG 460


>gi|226711953|sp|A3M1C6|MURD_ACIBT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193076113|gb|ABO10720.2| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 17978]
          Length = 448

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 126/354 (35%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 106 PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 146

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 147 LLKDQP-ELLVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQ 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
                    +   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 204 G----AKKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDADGTLWLACG 255

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R E+V T   
Sbjct: 256 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKT-VH 314

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 315 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFSPLRSSIEKYAK 373

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+         +DV+++
Sbjct: 374 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|260424625|ref|ZP_05732710.2| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
 gi|260402591|gb|EEW96138.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
          Length = 456

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 139/365 (38%), Gaps = 20/365 (5%)

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + +  +   +G ++      S I   +    +     I L++    ++  GV     E
Sbjct: 110 TKAPILAVTGTNGKTTTTTLLGSMIGHSSIPFAVAGNLGISLSREAELVAEDGVIAA--E 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L+   +      A    N+  DHI+ H T + Y  AK R+FE  + K++  ++ A
Sbjct: 168 VSSFQLEF--IKDFCPKAAVILNITPDHIERHHTMERYVAAKARIFEN-MGKDNCLLLNA 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +D Y+  +MK+A N    + S+     +   L     +  ++   + V G D      L 
Sbjct: 225 EDEYTPILMKKAKNTTVCLFSISRDVEEGACLNGADLVIKRRGKVLKVAGID---ELQLT 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L AA L    GI    + + + +   +P R EFV     G   Y D   T+ 
Sbjct: 282 GNQNYQNVLAAAFLAYEGGIPLEAIHDGIIEFKGLPHRIEFV-RELDGVSYYNDSKATNT 340

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +  +K + T    R I++   G D+       M  +   +  + ++ +   R +D  +
Sbjct: 341 --DAAIKGMETF--NRPIILIAGGYDKHTKLDKFMKTVKARVKCLILLGNAAARFKDEAE 396

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                  GI   +   +   A+     +    DV++++     +  +  N E +      
Sbjct: 397 -----KAGIKTIVLADDMRGAVEKGKSIACSGDVVLLSPACS-SFDMYANYEARGFDFKK 450

Query: 488 IIREI 492
           I+  +
Sbjct: 451 IVNRL 455


>gi|297566092|ref|YP_003685064.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus silvanus DSM 9946]
 gi|296850541|gb|ADH63556.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus silvanus DSM 9946]
          Length = 463

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 131/400 (32%), Gaps = 52/400 (13%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P LV    R   +L    L G+       L VTG+ GK++ ++ +  I   +G    
Sbjct: 82  DDEPELVEARRRNIPTLRRVHLLGEILGKGYSLGVTGSHGKTTTSAMLASIFLEAGTDPT 141

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            I   + + S   + R                      +   E             + L 
Sbjct: 142 VI-LGAKLPSMGGNARYGRG-----------------KYRIAEVD---ESDPWFQHLALD 180

Query: 206 AGSFTNLGRDHID--------YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                NL  DH+         YH    +   A  R            +  A+     E++
Sbjct: 181 VAVVMNLEPDHVGTPTERRPNYHPDFDSLKEAVRRFARN----AQRVVYNAEWPGLDELI 236

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNAL 316
           +       + +S G +    H + +  +    + T+   G         +PG   V +AL
Sbjct: 237 Q-----HPKRVSFGLEQGDCHTQNLHLLPMSSRFTVVWRGDPLGLVELGVPGLHNVVDAL 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  + +  G+  + + + L        RFE +G    G  +  DYAH    +  +L+  
Sbjct: 292 AAITVALLEGLPFSAIQKALAAFRGAHRRFELLG-EIHGAWVVDDYAHNPTKVRSVLEAA 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAE 431
           +  T  R+  VF         +       AL LAD A+V +     E P      ++ A+
Sbjct: 351 KG-TGRRVRAVFQPHRYLRTAQLWAEFAEALGLADEALVLEVYAAGEQPIPGVSGRMIAD 409

Query: 432 --IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I  G        +  EA     + L   D+++  G G 
Sbjct: 410 KLIAQGHNAQFLGWS--EARDYLEKNLKDGDLVLTIGAGD 447


>gi|313884894|ref|ZP_07818646.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619585|gb|EFR31022.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 443

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 143/422 (33%), Gaps = 63/422 (14%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F P  I +G    +++      D    +++    L +    KFL               
Sbjct: 55  EFSPDNIKEG--LTIIAGNAFGDDHPELVKARELGLPIYRYHKFLGDLIKNY------TS 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G+ GK+S    +  +      +S+ IG  +                          
Sbjct: 107 IAVSGSHGKTSTTGLLSHVVSHIQPTSYLIGDGTGFG----------------------- 143

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   + ++EA  +   +H            TN+  DH D++ +  A F+A M+ F   
Sbjct: 144 -DEAANYFALEACEY---RHHFLAYSPDYAIITNVDFDHPDFYPSIDAVFDA-MQTFANQ 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVE 296
             K   A    +D Y +++      A   V   G+      +  K+       Q  + + 
Sbjct: 199 THKGVIA--CGEDEYLRKL-----EAKVPVHFYGFSHDNEVYADKIERTPEGSQFDVYIN 251

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+ +  F+ P  G+  + NAL    +    G D  LV +H+     V  RF     N+  
Sbjct: 252 GEFYHHFVLPAFGQHNILNALAVITVLNLEGFDKDLVAQHIASFPGVKRRFSARKVNNL- 310

Query: 356 GRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH  + +   +    +     RI+ VF                 AL LAD   
Sbjct: 311 -TLIDDYAHHPSEIRATIDAAQQKFPHKRIVAVFQPHTFSRTIALLDEFGKALSLADDVY 369

Query: 415 VTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGK 467
           + D   + R  D      ++   +P  +E  +         + L+       +VL+  G 
Sbjct: 370 LVDIFHSAREHDGAVTIQDLAAKVPKNVEIISN--------QHLSPLMDYTDEVLLFMGA 421

Query: 468 GH 469
           G 
Sbjct: 422 GD 423


>gi|159044992|ref|YP_001533786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Dinoroseobacter shibae DFL 12]
 gi|189082879|sp|A8LS92|MURD_DINSH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157912752|gb|ABV94185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dinoroseobacter
           shibae DFL 12]
          Length = 464

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 142/446 (31%), Gaps = 55/446 (12%)

Query: 61  PQAIAQGAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
             A   G  A++ S      Y   + +  +  +  I V ++   F   FA+  + +    
Sbjct: 61  ADAFD-GVAALITSPGIPHLYPTPNPTIALAMSLGIPVDNDIGLFFRSFATPDWDEFDSL 119

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AVTG++GKS+ ++ +  +   +G  +   G                         L
Sbjct: 120 PRVIAVTGSNGKSTTSALIHHVLTAAGRPTQLAGNIG-------------------RGVL 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +    V +E SS+  +  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 161 DIDPGEDGGIVVLELSSYQTELAR--ALTPDIAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKR-----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               P  +      D+     +  +     A +   RV S    G    +        + 
Sbjct: 219 TIGGPDRAVIGT--DEPEGLFLASQLSVAPADDRVIRVTSAKPSGPGWVVSARKGFLAEH 276

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +        D   +  LPG     NA  A   C ++G+    +         +P R + V
Sbjct: 277 RKGRQTGSIDLRPIPGLPGAHNHQNAACAYAACRSLGLAPRQIEAGFASFKGLPHRSQIV 336

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT +    +    A   +S    L+    I           G +++ G   +   +    
Sbjct: 337 GTANGVTFVNDSKATNVDSAAKALQAFDRIRW------IAGGLEKEGGLAALTPHLGGVR 390

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
               I               AE   GIP            A+  A+      D +++A  
Sbjct: 391 KAYLIGRS-----------AAEFALGIPDTPHEVCETMARAVAAAVAEAEPGDTILLA-P 438

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
              +     N E++       + + L
Sbjct: 439 AAASFDQYDNFERRGEDFIAEVAKYL 464


>gi|317504112|ref|ZP_07962114.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella salivae DSM
           15606]
 gi|315664784|gb|EFV04449.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella salivae DSM
           15606]
          Length = 458

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 126/360 (35%), Gaps = 39/360 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ ++    I  +S +          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHMDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S+   ++ +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSKNSDYIVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II     +    MK+    G +V     +    H + V   + +         
Sbjct: 214 IQPGGALII-----HRNLEMKQHVQEGVKVYDYSREAGDFHAENVVIDNGEICFDFISPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++        P    + NA+ A  +    G  +  +   +     V  RF+F   ++R  
Sbjct: 269 ENVARVNLGQPIPINIENAIAAMAMAQLNGCTAEELRYGMRTYAGVDRRFDFKIKDNRH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DY H    +    ++++ +  GR I V+F            +    AL   D  I+
Sbjct: 328 VFLSDYGHHPKEVLQSARSLKELFKGRKITVMFQPHLYSRTRDFYLEFADALSNFDEVIL 387

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           T+  P  E+P        I   +   +   + K +  E +          DVLVV G G 
Sbjct: 388 TEIYPAREEPIEGVTSMLIYDHLKPNVEKTMIKKD--EVLDYVKG--RDFDVLVVLGAGD 443


>gi|149173091|ref|ZP_01851722.1| Cyanophycin synthetase [Planctomyces maris DSM 8797]
 gi|148847897|gb|EDL62229.1| Cyanophycin synthetase [Planctomyces maris DSM 8797]
          Length = 885

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 137/376 (36%), Gaps = 36/376 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++ +  +    + SG +   +G   T         +T         A  
Sbjct: 481 PIIAVTGTNGKTTTSKLIAHALKYSGKN---VGLAGTTGIEIDGVTITAGDYSGPEGARV 537

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL 233
            L    V H  +E +  G+ +  L       G   N+  DHI  D  +        K  +
Sbjct: 538 VLREPTVDHAVLEVARGGIIRRGLGFEDCHIGILLNVDEDHIGTDGVEDLDDLALVKSTV 597

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHN 287
            E ++     +I+ ADDA    +  RA  A   V+      + + + +         +  
Sbjct: 598 IE-VVRPSGFSILNADDAVVVGLKDRAGGA---VIYFSLDSENVTVTQHLTEGGTAVVLE 653

Query: 288 KQQVTISVEGKDFDFLFPL--------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              V I   G     L  L           F   N L A      +G+    +   +   
Sbjct: 654 GDDVIIRSNGPPVRVLSILDAPITLRGIVTFNTANVLAAVAALHGLGMAVNTIRNGMSTF 713

Query: 340 HV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           H      PGR   +   +   ++ +DY H   ++  +   +  I++GR IV+    G+R 
Sbjct: 714 HPSATQNPGRMNIIDFVT--FKVILDYGHNVPAINALGTALPKISNGRKIVIAHGTGNRT 771

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPR----SEDPEKIRAEIIHGIPGFIEKG---NRIEA 448
                  G     + D  I+ D +PR     E PE +++  +      +E     + ++A
Sbjct: 772 DDNIREFGAALASVYDHIILADIDPRNRVLGETPELVKSGALETGFSEMEIEIIIDPLKA 831

Query: 449 IRTAIEMLNKQDVLVV 464
           I  A  ++   D+++V
Sbjct: 832 IDRAFSIVQPGDLIMV 847


>gi|302518529|ref|ZP_07270871.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
 gi|302427424|gb|EFK99239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
          Length = 474

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 147/414 (35%), Gaps = 57/414 (13%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G E +V +  +      F+A   +  P+    +        A RL G      LAVTGT+
Sbjct: 70  GTELVVTAPGWQPGKPLFAAAEAAGVPVW--GDV-----ELAWRLRGPDAAPWLAVTGTN 122

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +G  +  +G                     ++   + L+ +    
Sbjct: 123 GKTTTVRMLAAILEAAGHRTAAVGNIG------------------VSLLDAVLAEEPYDV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H +  AY   K R++E     +   
Sbjct: 165 LAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMAAYAADKGRVYEG---NQVAC 219

Query: 245 IIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-----SVEGK 298
           +  + D  ++E+++ A    GCR +             V   +   +  +       +  
Sbjct: 220 VYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGVVEGYLVDRAFVPDRAQQAQEL 279

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   P    + NAL AA L  A G+ +  V E L      P R E V T      +
Sbjct: 280 AEVADVDPPAPHNIANALAAAALARAFGVPATAVREGLRAFRPDPHRIEHVATIDGVAYV 339

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               A  +++ E  L            +V+  GG         + + A       ++   
Sbjct: 340 DDSKATNTHAAEASLAAYEP-------IVWIAGGLAKGASFDELVQGAAKRLRAVVLM-- 390

Query: 419 NPRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVA 465
                D   IR  +    P   +   +R       EA+R A  +    D +++A
Sbjct: 391 ---GRDRALIREALARHAPNVPVVDLDRADTGAMSEAVREAAGLAESGDTVLLA 441


>gi|28493196|ref|NP_787357.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei str.
           Twist]
 gi|28476237|gb|AAO44326.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei str.
           Twist]
          Length = 475

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 137/433 (31%), Gaps = 47/433 (10%)

Query: 65  AQGAEAIVVSSAYSLQD-----FSATIRSNTP-ILVVDNTR-KFLSLFASRLYGKHPENI 117
             GA   V      L+      +S  I S+ P     +  R   L    +  +    + +
Sbjct: 57  QAGAIVKVGHDPAMLEGVDTFVYSGAIDSSNPEYAYAERARINLLHRSLALKWITRGKRL 116

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++ G+ GK+S  + +       G                        S +    A + L
Sbjct: 117 ISIAGSHGKTSTTAMIATALHVLGNKCGV----------------ANGSYMNFFSANALL 160

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +  +  + S      +             N+  DH+DY+ +Q A        F+  
Sbjct: 161 GLNDLFVIEADESDGSFLFY-----DTDISVVNNISMDHVDYYGSQSALE---GSFFDFS 212

Query: 238 LPKESPAIIYADDAYSKEVMKRA------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           L     A+I  DDA   ++  +            RV++ G               N  + 
Sbjct: 213 LRSSDAAVISLDDAACIKIASKLLQSSGSRGPSKRVITFGKNRSADVCLYEMGCMNPARF 272

Query: 292 TISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+  EG+ ++  F  L GE    N   A  + + +G   +  LE +        R E   
Sbjct: 273 TVLYEGRFYNAGFKGLFGEHHAVNTCAALSVLLCLGYGISESLEAILSFSGTRRRLELHF 332

Query: 351 TNS--RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIAL 407
            +    G +I+ DYAH    +   L  IR++   R+I +F      R          +  
Sbjct: 333 DSGGKDGIKIFDDYAHHPREIRTALTAIRSVQHTRLIALFQPHLYSRTAALHREFASVLE 392

Query: 408 DLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + AD  I+       E P      KI  +        +        +    + L   D++
Sbjct: 393 NCADFTIILPVYAARESPIPGVDAKIIFDAYRDKRNVVMLEGFDHTLSFFRQFLRDGDLV 452

Query: 463 VVAGKGHETVHIV 475
           +  G G     I+
Sbjct: 453 ITLGCGD-VYKII 464


>gi|119773493|ref|YP_926233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           amazonensis SB2B]
 gi|119765993|gb|ABL98563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           amazonensis SB2B]
          Length = 443

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 141/400 (35%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A++I++S   ++         +  I V+ +         +R        +LA+TG++GKS
Sbjct: 71  AQSIIISPGIAVDTPEVRAAMDMGIEVIGDV-----ELFAREIQDMAPCVLAITGSNGKS 125

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +    +    G     +                      L  +G     +
Sbjct: 126 TVTTLVGEMARADNKAVAVGGNIGVPA--------------------LELLGKGAELFVL 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  IAG+  N+  DH+D +   +AY  AK+RL+    P+   ++  
Sbjct: 166 ELSSFQLE--TTHSLHCIAGTCLNISEDHMDRYTDLEAYRQAKLRLY----PQSKLSVYN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDA          +     +S G    +     L      H   ++   ++        
Sbjct: 220 RDDA------ATIPDEPRNTVSFGLGVPELDDWGLMDGKIYHGASEIMNLLD-------V 266

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  LC A GI    +++  ++   +  R E V +++    +    A 
Sbjct: 267 ALIGSHNHANLLAAMALCEAAGISREAMVKVAKEFTGLAHRCELVASHNSIAWVNDSKAT 326

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +    L  +        I++   G  +     P+ G  AL      I      R  D
Sbjct: 327 NVGATVAALNGLAEHLG--DIILIAGGDGKGADFEPLRG--ALGAVSHLITLG---RDGD 379

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  E      G I+     EA+  A  + N  D++++
Sbjct: 380 KIAVLKE------GAIKVATMAEAVEKAKALANPGDIVLL 413


>gi|254775010|ref|ZP_05216526.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 496

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 102/299 (34%), Gaps = 39/299 (13%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ +  AY  A    F E L      ++  DD  +  + +R    
Sbjct: 183 PDVAVVTNIETDHLDFYGSADAYI-AVFDAFVERLAPGGALVVCVDDPGAAALARRTAEL 241

Query: 264 GCRVLSVGY----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFD---FLFPLPGEFQ 311
           G RVL  G     Q           +  +QQ T     I + G+          +PG   
Sbjct: 242 GIRVLRYGSGSHGQAPSGEPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHM 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-----RIYVDYAHTS 366
             NAL A    I IG  +  VL+ L     V  RFE VGT          R++ DYAH  
Sbjct: 302 ALNALGALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTAGGSAPSSTVRVFDDYAHHP 361

Query: 367 NSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             +   L  +RT+      GR I VF                 ALD AD   V D     
Sbjct: 362 TEIAATLAAVRTLLEQSGGGRSIAVFQPHLYSRTKAFAEEFGHALDAADEVFVLDVYGAR 421

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHET 471
           E P       + G+ G     +    +R                   DV+V  G G  T
Sbjct: 422 EQP-------LAGVSGASVAEHVSVPVRYLPDFSAAAEQVAAAAAPGDVIVTMGAGDVT 473


>gi|118463520|ref|YP_881541.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium 104]
 gi|166224703|sp|A0QF53|MURC_MYCA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118164807|gb|ABK65704.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium avium 104]
          Length = 496

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 102/299 (34%), Gaps = 39/299 (13%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ +  AY  A    F E L      ++  DD  +  + +R    
Sbjct: 183 PDVAVVTNIETDHLDFYGSADAYV-AVFDAFVERLAPGGALVVCVDDPGAAALARRTAEL 241

Query: 264 GCRVLSVGY----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFD---FLFPLPGEFQ 311
           G RVL  G     Q           +  +QQ T     I + G+          +PG   
Sbjct: 242 GIRVLRYGSGPHGQAPSGEPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHM 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-----RIYVDYAHTS 366
             NAL A    I IG  +  VL+ L     V  RFE VGT          R++ DYAH  
Sbjct: 302 ALNALGALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTAGGSAPSSTVRVFDDYAHHP 361

Query: 367 NSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             +   L  +RT+      GR I VF                 ALD AD   V D     
Sbjct: 362 TEIAATLAAVRTLLEQSGGGRSIAVFQPHLYSRTKAFAEEFGHALDAADEVFVLDVYGAR 421

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHET 471
           E P       + G+ G     +    +R                   DV+V  G G  T
Sbjct: 422 EQP-------LAGVSGASVAEHVSVPVRYLPDFSAAAEQVAAAAAPGDVIVTMGAGDVT 473


>gi|85712535|ref|ZP_01043583.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
 gi|85693669|gb|EAQ31619.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
          Length = 455

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 153/400 (38%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS     +D    +  +  + +V +   F  L        +   ++AVTG++GKS
Sbjct: 79  ADLIVVSPGLDARDADIQMARDAGVPIVGDVEIFAQL--------NQRPVVAVTGSNGKS 130

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V+Q+ Q  G      G                         +     Q      +
Sbjct: 131 TVTTLVEQMGQYHGYRWVAAGNIGV--------------------PVLDALQQDADAYVL 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R   +KL A +  N+  DH+D + ++Q+YF AK+ +F       S +++ 
Sbjct: 171 ELSSFQLETTR--SLKLNAAALLNVSADHLDRYDSEQSYFEAKLNIFNH----ASVSVLN 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFP 305
             D   +   K   ++   V      G    +     + +   + ++  G        F 
Sbjct: 225 RQD--QQHWPKIVPDSVVTV------GVDESVSDYGLVKDDAGIAMTRNGSILARADRFA 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AH 364
           L G   + N   A  L   +G+     +  +     +P R + V   ++G R   D  A 
Sbjct: 277 LAGTHNLVNIQAALALAETLGLSPDKGIAAIADFTGLPHRCQVVY-EAQGVRWVDDSKAT 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              + E  +  +R + +GR+I++   G  +      ++  ++     + I         D
Sbjct: 336 NIGATEAAINGLRPMINGRLILI-AGGDGKGAQFTQLLPVLSQVDVLLTI-------GRD 387

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +KI AE+  G        +   A++TA ++   +D +V+
Sbjct: 388 GKKI-AELRKGARYCEHLSD---AVKTAQQIAEAEDWVVL 423


>gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 146

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 25/159 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +   + +I  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLIK-------ETIGNMDVEITGLEMDSRKITDGDLFICVSGI--DGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP- 114
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 115 -ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
              ++ +TGT+GK++ +  +++I    G  +  +G    
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGV 141


>gi|157963624|ref|YP_001503658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           pealeana ATCC 700345]
 gi|157848624|gb|ABV89123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           pealeana ATCC 700345]
          Length = 439

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 143/395 (36%), Gaps = 56/395 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   + +     +  +  I V+ +   F    A     +    ++ +TG++GK++V 
Sbjct: 70  IVISPGIACETPEVRVAFDMGIEVIGDVELFARAVA-----QTSAKVIGITGSNGKTTVT 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + SG S    G     +                      L  +      +E S
Sbjct: 125 TLVGEMAKASGSSYAVGGNIGVPA--------------------LDLLLEPKDLYVLELS 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      ++ +A +  N+  DH+D +   ++Y  AK++L+E+       A+   +D
Sbjct: 165 SFQLE--TTYSLQCVAATCLNISEDHMDRYSDLESYRQAKLKLYEQ----SKMAVFNRED 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +        N      S G          V      Q  +  +   D      L G  
Sbjct: 219 TLT------LPNNPTNQQSFGLDAPEGDDWGVSGGMIVQGSSQIMPISD----VALVGSH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N + A  L  A GI     +E  +    +  R E V      G  YV+ +  +N + 
Sbjct: 269 NLANIIAAMALTTAAGIKRECQIEVAKTFLGLAHRCEVVA--DIDGVTYVNDSKATN-IG 325

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  I  ++     ++   GGD        +  +   ++ + ++  D            
Sbjct: 326 ATVAAIDGLSEHLGELILIAGGDGKGADFKPLEPVLEKVSQLIVLGKD-----------G 374

Query: 431 EIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + I G+ P  I+  N +EA+  A E+    D++++
Sbjct: 375 DKIAGLKPEAIKVANMVEAVAKAHELATAGDIVIL 409


>gi|320007795|gb|ADW02645.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces flavogriseus ATCC
           33331]
          Length = 464

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 85/432 (19%), Positives = 149/432 (34%), Gaps = 44/432 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A ++VVSSA    +      +   I VV  +    SL     
Sbjct: 54  GATVHIGH--AAGHLADDATSVVVSSAIRADNPELVRAAELDIPVVHRSDALASLMDGL- 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   +AV GT GK++  S +           S+ IG               T    
Sbjct: 111 ------RSIAVAGTHGKTTTTSMLAVALSELALDPSYAIG-----GDLEGPGTNATHGDG 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +  A +  S +                              N+  DH   + +    + 
Sbjct: 160 DIFVAEADESDRSFQKY-----------------APEVAIVLNVELDHHANYASMDEIYE 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIH 286
           +    F   +      ++ AD   + E+  +    +  RV++ G  +G  + + KV    
Sbjct: 203 S-FETFVGKVVPGGTLVVAADQPGAVELTRRVRERSSVRVVTYGESEGADVRVHKVTPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+ + GK   F   +PG    +NA+ A    +A+G+ +  +   +     V  R 
Sbjct: 262 LTSEVTVVLNGKFLTFTVSVPGRHYAHNAVAALAAGVALGVPAHNLASAIGTYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI 405
           +  G  + G ++   YAH    +   L+ +R   S  R++VVF         +       
Sbjct: 322 QLKGEAA-GVQVIDSYAHHPTEMAADLEAMRGAASESRLLVVFQPHLFSRTQELGTEMGQ 380

Query: 406 ALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQ 459
           AL LAD ++V D  P  EDP       +  +        +   +   A+  A+  M    
Sbjct: 381 ALALADASLVLDIYPAREDPLPGVTSALIIDAAKAAGADVTAVHDKAAVPAAVAGMAKPG 440

Query: 460 DVLVVAGKGHET 471
           D+++  G G  T
Sbjct: 441 DLVLTMGAGDVT 452


>gi|297626709|ref|YP_003688472.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922474|emb|CBL57047.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 480

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 103/280 (36%), Gaps = 17/280 (6%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH--NA 263
               TN+  DH+D   + + Y     R      P     +I ADDA ++E+  +     +
Sbjct: 185 IAVITNVEADHLDNWGSAEHYARGFERFATG--PTVRDVVIDADDAGARELTGKLRRLAS 242

Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G  V + G        L  +         T+  +G ++     +PG   ++NA  A    
Sbjct: 243 GPTVTTYGEADDADARLSDIEFSGMHSSATLHFQGHEYALRLSVPGRHNLWNAAAAFVTG 302

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             +G+ +  +L   +       RF+ +G+         ++ DYAH    +   L   R +
Sbjct: 303 RLLGLAADDLLRGAQAFAGTLRRFQPLGSATLPDGQVHVFDDYAHHPTEIRAALNAGRRV 362

Query: 380 TS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAE-- 431
               R++  F         +       AL LAD+ +VTD     E+P      K+ A+  
Sbjct: 363 AGDHRLVACFQPHLYSRTREFATEFGRALALADLVVVTDIYGAREEPVPGVSGKLVADAA 422

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +  G   +    N+ E       ++   D ++  G G  T
Sbjct: 423 VEAGADTY-YVPNKAELPVELAALVRGGDFVLTLGAGDVT 461


>gi|60389983|sp|Q6FFC2|MURD_ACIAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 448

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 147/449 (32%), Gaps = 82/449 (18%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ--G---------AEAIVVSSAYS--LQD 81
           +DSR                 GH  IPQ +    G         AE I++S   +  L +
Sbjct: 35  TDSRETPP-------------GHDQIPQDVQTSFGQLDTELLLQAEEIILSPGLAPQLPE 81

Query: 82  FSATIRSNTPIL---VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
               I    P++    V   R+   +            I+A+TG++ KS+V +   Q+ +
Sbjct: 82  IQQAIAQGIPVIGDIQV--LRRATQV-----------PIVAITGSNAKSTVTTLFGQMAK 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G      G             L    P  L   LS    +  +H              
Sbjct: 129 DAGKRVAVGGNLGRPG-----LDLLKDEPELLVLELSSFQLETTSH-------------- 169

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +        N+  DH+D H     Y  AK R+F+ +       +   DD+ ++ ++ 
Sbjct: 170 ---LNAEVAVILNMSEDHLDRHGDMLGYHQAKHRIFQGV----KKVVYNRDDSLTRPLVP 222

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
            +        S G     I    V    +          +        + G   + NAL 
Sbjct: 223 DSTPMQ----SFGLNAPDIKQYGVLREDDGTMWLARGRTRLIKSSELYIQGTHNIANALA 278

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMILKN 375
              L  AIG+    +LE L++   +  R E+V T     R Y D   T+   +L  I   
Sbjct: 279 CLALGEAIGLPVESMLETLKQFKGLEHRCEYVKT-VNDVRYYNDSKGTNVGATLAAIDGL 337

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
              I   +  V+   GG        ++ +        AI+       ED ++I   +   
Sbjct: 338 GAAIEPKQGKVIVILGGQGKGQDFSLLRQSVEKYVKAAILI-----GEDAQQIEQALTE- 391

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +      +A+  A +    +DV+++
Sbjct: 392 TTQLVHASTLKDAVTQAQQYAQPEDVVLL 420


>gi|16759124|ref|NP_454741.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140674|ref|NP_804016.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194445444|ref|YP_002039361.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197247646|ref|YP_002145115.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198242404|ref|YP_002214081.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207855643|ref|YP_002242294.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213052847|ref|ZP_03345725.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426154|ref|ZP_03358904.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213621331|ref|ZP_03374114.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|238911186|ref|ZP_04655023.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289823733|ref|ZP_06543345.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|20532168|sp|Q8Z9G8|MURC_SALTI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706327|sp|B5F7W5|MURC_SALA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706328|sp|B5FI73|MURC_SALDC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706329|sp|B5R2M5|MURC_SALEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620428|sp|B4SU51|MURC_SALNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293609|pir||AF0518 UDP-N-acetylmuramate,alanine ligase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501414|emb|CAD01286.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136298|gb|AAO67865.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194404107|gb|ACF64329.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197211349|gb|ACH48746.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197936920|gb|ACH74253.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206707446|emb|CAR31719.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326621825|gb|EGE28170.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 491

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 145/434 (33%), Gaps = 61/434 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+ +   + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  D       PG     NA  A  +    GID   +L  LE       RF+F+G   
Sbjct: 276 RQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R       ++++F                
Sbjct: 336 LEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK- 458
             L   D  ++ D  P  E P  I       +   I    +I+ I          ML   
Sbjct: 396 NVLTQVDALLMLDVYPAGEAP--IPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPV 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LTGNDLILVQGAGN 467


>gi|227891044|ref|ZP_04008849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
 gi|227867133|gb|EEJ74554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
          Length = 458

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 18/262 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+   HIDYH T++ Y NAKMR+      ++   ++  D+   +E+ +R+  
Sbjct: 181 HPKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQT-EDDYFVVNWDNEEWQELSQRSKA 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +G      ++      + + ++    +         +PG   V NAL A  + 
Sbjct: 240 KIVPFSRLGKSKDGAYVADGYLFYREDKIMPVDD-------IKVPGTHNVENALAAIAVA 292

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G  +  + E L     V  R ++V T   G + Y D   T+  +E   K +      
Sbjct: 293 KIFGKSNEDIKEVLTTFSGVRHRTQYVTT-LNGRKFYNDSKATN--MEATEKALAGF--N 347

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             +V+   G DR      +   +   +  + +  +    + D      +   G+   I+ 
Sbjct: 348 NPVVLLAGGLDRGFTFEKLEPSLKNKVHAMIVFGE----TADLMAKAGK-EAGVEKIIKT 402

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            + + A+  A ++ N+ DV+++
Sbjct: 403 KDAVSAVPEAYKVSNEGDVILL 424


>gi|220920537|ref|YP_002495838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium nodulans ORS 2060]
 gi|219945143|gb|ACL55535.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           nodulans ORS 2060]
          Length = 460

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 108/330 (32%), Gaps = 38/330 (11%)

Query: 60  IPQAIAQGA-----EAIVVSSAYS----LQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           +  A  +GA      A++++           ++    ++  + V+ +   F    A+   
Sbjct: 53  VATADLRGADWAEFAALLLAPGVPFTHPEPHWTVKRAASAGVPVIGDIELFCRERATTA- 111

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  +A+TGT+GKS+  + +  + + +G      G   T                  
Sbjct: 112 --PDAPFVAITGTNGKSTTTALIAHVLRETGHDVQMGGNIGT------------------ 151

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS           +E SS  +D      +K   G   N+  DH+D H     Y    
Sbjct: 152 -AILSLAPPAPGRVHVIEMSSFQIDL--TPTLKPSVGVLLNITPDHLDRHGDMANY---- 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             + E L+     A+I  DD Y++ +  R      RV  VG       +     +     
Sbjct: 205 AGIKERLIASSDHAVIGVDDDYTRAIAARHAGPLTRVH-VGETAPGPGILARHGVLIDGC 263

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D   +  L G     NA +A  +  A+G+      + L     +P R E VG
Sbjct: 264 TEPPSPVADLTGIPSLRGSHNWQNAGIAYAVARALGVAPDAFAQALRSFPGLPHRMEEVG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                  I    A  ++S E  L     + 
Sbjct: 324 RRGSVLFINDSKATNADSTEKALAAFPRVH 353


>gi|299536847|ref|ZP_07050154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727671|gb|EFI68239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 730

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 119/357 (33%), Gaps = 23/357 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++GK++  +F+  I  +           +T     +       S        +
Sbjct: 373 PIIAITGSAGKTTTKAFIGSILSKKWNVFESKDYWNTTEHTKKHKEEINDSHQ------A 426

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLF 234
            +   G+ +        G+  +    I+      TN+G  H+       +    AK  L 
Sbjct: 427 VVLEYGMAYP-------GIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELI 479

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
              + ++   I+  DD  S+ +         ++++VG  +        +          +
Sbjct: 480 HG-MDQQGLLIVNQDDDNSRYL--ETQQFKGKIITVGIKKEADYRAYDLQYKDVGMSFKM 536

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + G++ +   P+ GE  VYNAL A  +   +G     +   L      P R        
Sbjct: 537 KLHGQEIELYIPILGEHHVYNALNAVAVADLLGFSPLDIQSGL-NFKKPPRRLTIYNCRD 595

Query: 354 RGGRIYVDYAH-TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               +  D  H     +   L  +  I + R + + G   +    +     K+   + DI
Sbjct: 596 D-ITVIDDTVHSHPQGVRAALDVLTNIATNRKVAIIGQMRELGVLREEEYRKVGEYVYDI 654

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEML-NKQDVLVVAGK 467
            I           E   A I  G+ P  +      + +   +E L    D ++V G 
Sbjct: 655 GIDEFITYGFRTDEMSNAAIAKGMDPSRVHHFINKDQLHVLLEKLIKPHDTILVKGA 711


>gi|294628851|ref|ZP_06707411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
 gi|292832184|gb|EFF90533.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
          Length = 473

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 157/440 (35%), Gaps = 56/440 (12%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE +V +  +      F A  R+  P+    +        A RL G      LAVTGT+
Sbjct: 73  GAELVVTAPGWKPDKPLFQAAGRAGVPVW--GDV-----ELAWRLRGPDAAPWLAVTGTN 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +GL +  +G                     ++   + L  +    
Sbjct: 126 GKTTTVQMLAAILKAAGLRTAAVGNIG------------------VSLLDAVLGEEKYDV 167

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E    + +  
Sbjct: 168 LAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEG--NRVACV 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
              AD A    V       GCR +             V       +  ++   K+   L 
Sbjct: 224 YNVADKATEDLVRAADVEEGCRAVGFTLGTPGPSQLGVVEGLLVDRAFVADRHKNAQELA 283

Query: 304 ----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                  P    + NAL AA L  A G+ +A V + L        R   V        + 
Sbjct: 284 EVSDVNPPAPHNIANALAAAALARAFGVPAAAVRDGLRSFTPDAHRIAHVADVDGVAYVD 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A  +++ E  L +  +      IV    G  +      ++   A  L    ++  D 
Sbjct: 344 DSKATNTHATEASLASYES------IVWIAGGLAKGATFDELVAGAAERLRGAVLIGADR 397

Query: 420 PRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHETV 472
                   IR  +    P   +   +R       +A++ A  +    D +++A     ++
Sbjct: 398 ------ALIRDALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLA-PACASM 450

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            +  N  ++     + +RE+
Sbjct: 451 DMFANYNQRGDAFAEAVREL 470


>gi|90416337|ref|ZP_01224269.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2207]
 gi|90332062|gb|EAS47276.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2207]
          Length = 485

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 138/420 (32%), Gaps = 52/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SSA ++++          I VV    + L+      +G      +A+ GT GK
Sbjct: 74  GANVVVKSSAVTVENTEIAAARAQGIPVVRRA-EMLAELMRYRHG------IAIAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I    G       PT  +                +  A +     G  ++ 
Sbjct: 127 TTTTSLITAILAEDGRD-----PTFVVGGR-------------VNSAGTNAKLGGSRYLV 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL-FEELLPKESPAI 245
            EA            ++ +    TN+  DH++ +         K  + F   LP    A+
Sbjct: 169 AEADESDAS---FLHLQPMVAVVTNIEADHMETY-DFDFSRLTKTYIEFLHNLPFYGLAV 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK--DFDF 302
           +  DD   ++++          L+ G+       ++ +     +    I       +   
Sbjct: 225 MCIDDPVIRDLLVDVARPM---LTYGFSDDAAYRVRDLTVDQGRSTFVIERPDGLAELQV 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRI 358
              +PG     NA  A  +    GI    +++ L     V  RFE  G     +     +
Sbjct: 282 SLNMPGRHNALNAAAAIAVASDEGISDRAIIQGLSSFSGVGRRFEIYGDYQLESGGSAML 341

Query: 359 YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    ++  +  +R      R++++F                  L   D+ I+  
Sbjct: 342 VDDYGHHPTEIKATVDAVRGGWPDKRLVMIFQPHRYTRTRDLYEDFVKVLAEVDVLILLA 401

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-RTAIE--------MLNKQDVLVVAGKG 468
             P  E  E I       + G I +   ++ I    IE        ++   D+++  G G
Sbjct: 402 VYPAGE--EMIAGASSKNLSGSIRQRGTVDPIYAETIEEIPALLNGLVQDNDLVITQGAG 459


>gi|325124219|gb|ADY83742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 448

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 128/354 (36%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 106 PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 146

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 147 LLKDQP-ELIVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQ 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
            +       +   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 204 GV----KKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDGDGTLWLARG 255

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R E+V T   
Sbjct: 256 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKT-VH 314

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 315 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFGPLRSSIEKYAK 373

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+  +      +DV+++
Sbjct: 374 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVELSQRETQAEDVVLL 420


>gi|319953738|ref|YP_004165005.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Cellulophaga
           algicola DSM 14237]
 gi|319422398|gb|ADV49507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           algicola DSM 14237]
          Length = 444

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 122/354 (34%), Gaps = 42/354 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++    V  I +  GL     G                          
Sbjct: 102 AKIIGITGSNGKTTTTMLVNHILKSEGLHVGMAGNIG-------------------DSYA 142

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRL 233
             ++     +  +E SS  LD   +   K      TN+  DH+D +  + + Y  +K R+
Sbjct: 143 KMVAENDFEYYVLEISSFQLD--GIVDFKPHIAILTNISPDHLDRYDYKYENYIASKFRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             E   ++   I  ADD    + +K+ H    +++    +       +  A    + +TI
Sbjct: 201 -AENQTEDDYFIYDADDKDLTDWLKK-HPVKAKLMPYSIE----RTIEEGAFSTNKDITI 254

Query: 294 SVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +              L G+  + N + A+     IGI    +   +        R E V 
Sbjct: 255 TTNNDTLKMKTDSLSLEGKHNLKNTMAASTASKLIGIRKETIRNSVANFQGAEHRLEKVL 314

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  I    A   N        + ++ +  + +V   G D+    + +M  +   + 
Sbjct: 315 KIHHVEYINDSKATNVN---ATYYALDSVRTPTVWIV--GGVDKGNDYKSLMPLVREKVK 369

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I  +  DN       KI     + +   +E  +  E ++ A +M  + D +++
Sbjct: 370 AIICLGKDNT------KIIEAFGNVVDLIVEAYDMSETVKIAYKMAERGDTVLL 417


>gi|158522799|ref|YP_001530669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
 gi|226711907|sp|A8ZXW5|MURD_DESOH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158511625|gb|ABW68592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
          Length = 459

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 133/400 (33%), Gaps = 50/400 (12%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ IVVS      L           P+             A+R   K    + AVTGT+G
Sbjct: 72  ADYIVVSPGVPETLAPLKKAAEKGIPV-------MGEMELAARFVTKP---VAAVTGTNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V + +  + + SG   F  G          D                    +     
Sbjct: 122 KTTVTTLLGDMLKASGRQVFVGGNIGAPLIGFADKG------------------ENADMA 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VE SS  LD    +  +       N+  DH+  +    AY  +K R+FE     +  A+
Sbjct: 164 VVEVSSFQLDTS--ETFRPHVAVLLNIAEDHLARYVDFNAYVRSKGRIFENQ-EADDVAV 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I   D +   V++ +     R L+    GK      V      + VT   +        P
Sbjct: 221 INGADFH---VLQASKGIRSRKLTFN-AGKNTQDGAVIGDTAVEIVTAGTKTATISVTSP 276

Query: 306 LPG-EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           L      + N   A    +A+G     +   ++    +  R E+V +           A 
Sbjct: 277 LMRARHNMENIAAATLAALAMGATVEGIQAAVDGFQGLRHRLEYVASIDDVHYFDDSKAT 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +++   L+   +      +V+   G D+      +   I      + +          
Sbjct: 337 NPDAVRRALEFFTS-----RVVLLLGGEDKGCDYGVLKNVIRERARAVVLF------GAA 385

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            EKIR  I +G     + G+  EA+R A E+    D +++
Sbjct: 386 KEKIRMAI-NGSVSLWDAGSMAEAVRRAHELAAPGDAVLL 424


>gi|160903252|ref|YP_001568833.1| Mur ligase middle domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360896|gb|ABX32510.1| Mur ligase middle domain protein [Petrotoga mobilis SJ95]
          Length = 430

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 146/399 (36%), Gaps = 47/399 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +    DSR +  G +F+ + G K DGHLFI  A+  GA  ++V       DF        
Sbjct: 10  HNFQIDSRKVNEGDVFLCLKGEKTDGHLFINDALKNGASYVIVEKDVV--DFPKEK---- 63

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I+ V++  + + + AS L  ++ +  + +TG++GK++    +  +              
Sbjct: 64  -IIKVNSVLEEMLISASTLINENAKLKIGITGSTGKTTTKECLYYLLLA----------- 111

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD-GIKLIAG 207
                + +  R        +   LS L+  +   T +  E      D   L     L   
Sbjct: 112 -----YFKTFRNEMNLNTEIGIPLSILNNYNNEETVILEEGLRKKGDLEFLSRYFNLDVA 166

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H+++  + +     KM++   +   +   II  D +  KE+  +        
Sbjct: 167 IITNVGASHLEFLDSLETVAEEKMKITSNM--DKGVLIINGDYSLLKELAPK----HLNR 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF---QVYNALVAAGLCIA 324
           L+ G + +   + K    +     T        D +  L   +   Q+ + L    L   
Sbjct: 221 LTFGTKDENDAVLKSFEYNENHTTTFYARILQEDLMVTLNHYWSEGQILDLLSGLLLLRF 280

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I +        L  +++   RF+ +    RG  + V+ ++ + S E       +I    +
Sbjct: 281 IDLPVDPYY--LFNINIPQDRFQTIK---RGNLLIVNDSYNA-SYESFKSAFNSIKKWNL 334

Query: 385 -IVVFGCGGDRDQGKRPIMGKI-----ALDLADIAIVTD 417
              +   G  ++ GK      I     AL++ D     D
Sbjct: 335 SPKIIIMGEIKELGKYSEEYHIKVITEALNIFDRIYFYD 373


>gi|85858524|ref|YP_460726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophus
           aciditrophicus SB]
 gi|122063269|sp|Q2LR50|MURD_SYNAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|85721615|gb|ABC76558.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophus
           aciditrophicus SB]
          Length = 453

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 153/432 (35%), Gaps = 52/432 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+AQ  +A+V S                 I V+          A R        ++A+T
Sbjct: 68  SALAQ-VDAVVPSPGVPPFHPVLKEAVKRCIPVISEL-----ELACRYLQTP---MIAIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GK++  S + +I   SG   F  G   T                           Q 
Sbjct: 119 GTNGKTTTTSLIGEILSGSGRKVFVGGNIGTPLVEYVTGP------------------QT 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                VE SS  L    +D          N   DH++YH + +AY   K R+F     K+
Sbjct: 161 ADCAVVEISSFQL--QWVDQFHAFVSILLNTTCDHVNYHGSFEAYRAVKERIFNNQ-GKQ 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI+ AD+  S  + +   +      +     + ++ +K   I       +  EGK   
Sbjct: 218 DVAILNADEPDSAVLAESLSSPVFFFSTTKMVERGLYQEKDRLIC------LDGEGKQEF 271

Query: 302 F---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +   +  LPG   V N + A     A G     V+  +     +  R EF  T   GG  
Sbjct: 272 YPLSMIRLPGAHNVENVMAAILASRACGCSPENVINAISGFSGIAHRIEF--TREIGGVK 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           + D +  +N +  + + I T +    I++   G D+D     +   +   +  + I    
Sbjct: 330 FYDDSKGTN-VGAVKRAIETFSDP--IILLMGGRDKDGDFETLSALLQDRVKALVIF--- 383

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
               E  E+I  E I GI   +   +  EAI  A       DV++++  G  +     + 
Sbjct: 384 ---GEARERI-QERIGGIVPTVLTPSLKEAIAAARRQACAGDVVLLS-PGCASFDEFADY 438

Query: 479 EKKMSVDCDIIR 490
           + +     + +R
Sbjct: 439 KARGRFFKEEVR 450


>gi|163856171|ref|YP_001630469.1| cyanophycin synthetase [Bordetella petrii DSM 12804]
 gi|163259899|emb|CAP42200.1| cyanophycin synthetase [Bordetella petrii]
          Length = 946

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 130/375 (34%), Gaps = 32/375 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG +GK+ VA  V ++   +G      G   +   +     +        A    
Sbjct: 558 PVVGITGANGKTVVARLVARLLALAGR---HTGLACSEGLYLGSRLVQAGDRADWASGRR 614

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQTQQAYFNA-KMRL 233
            L ++ V    +E  S  +    L   +   G  TN+ + DH+     Q     A   R 
Sbjct: 615 LLMNRSVEAAVIENDSAVILGQGLAYDRCQVGVVTNIDQGDHLGDFDIQDTDRLANVFRT 674

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-- 291
             +++     A++ A D     V   A      V+  G       + +  A   +     
Sbjct: 675 QVDVVLPGGAAVLNARDPL---VAGMAPLCDGDVVFFGIDPGLPAIAEQLAQGKRAVFLR 731

Query: 292 ---TISVEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               +  EG++                   FQV N L A G   A+GI  A++   +E  
Sbjct: 732 GGSIVLAEGRNETPLADIAAIPLTHGARVGFQVENVLAAVGTAWALGIPDAIIRAGIEAF 791

Query: 340 HVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            +      ++F      G  + VD  H +++L+ ++       + R   V+  G DR   
Sbjct: 792 DIDQADAPWQFTLFERGGATVVVDDVHNASALQALIDAAARFPASRRCAVYAAGADRRDA 851

Query: 398 KRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAI 449
                G++     D  ++ DD       P  +    +R  +  G       ++ +   AI
Sbjct: 852 DLIEQGRLLAGAFDRVVLYDDATVTSRRPAGQARALLRQGLAQGTRPIDVQDEPDHALAI 911

Query: 450 RTAIEMLNKQDVLVV 464
             A++ +   D +++
Sbjct: 912 GLALDHIQAGDFVLL 926


>gi|302672146|ref|YP_003832106.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
 gi|302396619|gb|ADL35524.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
          Length = 539

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 128/379 (33%), Gaps = 39/379 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGK 126
           A  IV +    L  F   + +     + +   ++    A R+  +HP   I+ +TG+ GK
Sbjct: 138 AVLIVWAVYIGLFPFLTALANLINKPIENRINRYFIDDAKRILREHPGLRIIGITGSFGK 197

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY--LSSQGVTH 184
           +SV  ++  +                          +  +P+ + + +    + +  +  
Sbjct: 198 TSVKYYLTTLLSE--------------GYRVLMTPESYNTPMGIVRTIREHLMPTHEIFV 243

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             + A      +   D +    G  T++G  H++   +     + K  L + +  K    
Sbjct: 244 CEMGARHLHDIKEITDIVHPDDGILTSIGHQHLETFHSLDNIISTKYELLDAVDEKMKAD 303

Query: 245 --------IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                    +  D+      + RA+      ++ G  +G       +    +    T++ 
Sbjct: 304 GKKDAHLKFVNGDNE-----IIRANMKYEDAITYGLSEGCDYRATDIKVSGSGTSFTVTA 358

Query: 296 E-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             G+  +F   L G   V N + A     ++GI    +   + +L  VP R E +     
Sbjct: 359 PNGETCEFATKLVGRHNVENIVGAIAAANSLGIPMTKLRIAVRRLASVPHRLELIKHG-- 416

Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA 410
              I  D Y    N  ++ L+ +        I+V        +++       GK A  + 
Sbjct: 417 PVSILDDAYNSNPNGAKVALETLDLFEDQVKILVTPGMVELGEKEDEYNKEFGKQAAAVC 476

Query: 411 DIAI-VTDDNPRSEDPEKI 428
           D  I V + N  S     I
Sbjct: 477 DYIILVGEKNSASIKAGAI 495


>gi|261493191|ref|ZP_05989720.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496953|ref|ZP_05993320.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307389|gb|EEY08725.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311154|gb|EEY12328.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 475

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 148/428 (34%), Gaps = 51/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + IA GA  +VVS+A    +          I V+    + L+      +G    
Sbjct: 69  GHQ--AENIA-GASVVVVSTAIDETNPEIIAAREARIPVIRRA-EMLAEIMRFRHG---- 120

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  + +  I   + L    +      S+          +  YL   ++
Sbjct: 121 --IAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSAG---KNAHLGASRYL---IA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D +             F 
Sbjct: 173 EADESDASFL---------------HLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFL 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++ ADD     VM+ A   G +V++ G+ +     ++       ++  T+ 
Sbjct: 218 RNLPFYGLAVMCADDET---VMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVV 274

Query: 295 VE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
              G+  D L  +PG     NA  A  +    GI +  +L  L        RF+ +G+  
Sbjct: 275 CPSGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI 334

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDL 409
             +    +  DY H    +++ ++  R+   G+ +V +F                  L  
Sbjct: 335 RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVLSK 394

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQD 460
            D  I+ D     E P  I       +   I    +++ I             +++   D
Sbjct: 395 VDALILLDVYAAGEAP--IVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQDGD 452

Query: 461 VLVVAGKG 468
           +++  G G
Sbjct: 453 LILAQGAG 460


>gi|224581972|ref|YP_002635770.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254766020|sp|C0Q5I7|MURC_SALPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|224466499|gb|ACN44329.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 491

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 146/434 (33%), Gaps = 61/434 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+ +   + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  D       PG     NA  A  +    GID   +L  LE       RF+F+G   
Sbjct: 276 RQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R      +++++F                
Sbjct: 336 LEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKKLVMLFQPHRYTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK- 458
             L   D  ++ D  P  E P  I       +   I    +I+ I          ML   
Sbjct: 396 NVLTQVDALLMLDVYPAGEAP--IPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPV 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LTGNDLILVQGAGN 467


>gi|227113985|ref|ZP_03827641.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 486

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 145/422 (34%), Gaps = 53/422 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLF 304
            DDA  +E++ R       + + G+      ++         Q   ++E KD        
Sbjct: 231 IDDAVIRELLPRVGR---HITTYGFS-DDADVRISGYHQTGAQGHFTLERKDKPLLTVTL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR- 357
             PG     NA  A  +    GID   +L  LE+      RF+F+G       N + G  
Sbjct: 287 NAPGRHNALNAAAAVAVATDEGIDDEAILRALERFQGTGRRFDFLGEYPLELVNGQSGTA 346

Query: 358 -IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DY H    ++  +K  R      R++++F                  L   D+ ++
Sbjct: 347 MLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLM 406

Query: 416 TDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQ-DVLVVAGK 467
            D     E P        +   I   G    I   + ++ +   +    +  D+++V G 
Sbjct: 407 LDVYSAGESPIPGADSRSLCRTIRGRGKIDPILVTD-VDTLPELLSQALRGEDLILVQGA 465

Query: 468 GH 469
           G+
Sbjct: 466 GN 467


>gi|253689952|ref|YP_003019142.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259509777|sp|C6DEU2|MURC_PECCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251756530|gb|ACT14606.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 486

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 145/421 (34%), Gaps = 51/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVTSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DDA  +E++ R       + + G+     + +     +  +   T+  + K        
Sbjct: 231 IDDAVIRELLPRVGR---HITTYGFSDDADVRVSGYRQVGAQGHFTLERKDKPLLTVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR-- 357
            PG     NA  A  +    GID   +L  LE+      RF+F+G       N + G   
Sbjct: 288 APGRHNALNAAAAVAVATDEGIDDEAILRALERFQGTGRRFDFLGEYPLELVNGQSGTAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      R++++F                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLML 407

Query: 417 DDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKG 468
           D     E P        +   I   G    I   + ++ +   +    +  D+++V G G
Sbjct: 408 DVYSAGESPIPGADSRSLCRTIRGRGKIDPILVTD-VDTLPELLSQALRGEDLILVQGAG 466

Query: 469 H 469
           +
Sbjct: 467 N 467


>gi|293610054|ref|ZP_06692355.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827286|gb|EFF85650.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 448

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 128/354 (36%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 106 PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 146

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 147 LLKDQP-ELIVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQ 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
            +       +   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 204 GV----KKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDGDGMLWLARG 255

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R E+V T   
Sbjct: 256 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKT-VH 314

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 315 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFGPLRSSIEKYAK 373

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+  +      +DV+++
Sbjct: 374 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVELSQRETQAEDVVLL 420


>gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301]
          Length = 789

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 139/407 (34%), Gaps = 59/407 (14%)

Query: 15  INQLSIFPMQWRERKINEVSSDSR----HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           I  +        + ++  V +DSR     + +G +FVA+ G   D H F+ Q  A+G  A
Sbjct: 8   IAAVVGGRFSGTDCEVQSVVTDSRSLTCELGSGPVFVAMCGANHDSHAFVAQMYARGVRA 67

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V                   +VV+N    L   A+    +    ++ +TG++GK+ + 
Sbjct: 68  FMVERPLEA-------LPECGYVVVENAIAALQCLAAYHRAQFRGTVVGITGSNGKTVIK 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            ++ +    +G+  ++       S  + +++L  P  + + +    L+           S
Sbjct: 121 EWIAEELP-AGMKCYR-------SPKSYNSQLGVPLSVLMIEGDEQLALIEA-----GIS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G        I+     FT++G  H +     +   + KM L       E+       +
Sbjct: 168 KPGEMARLERIIRPDVVVFTSIGDAHQENFLNLEQKCDEKMVLAHR---AETIVYHSYYE 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + +  R                    +K+C   +  +V  ++ G +           
Sbjct: 225 PLGRMIASR-----------------FAGRKLCDAASCPEVPETLIGNEASRR------- 260

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NA +    C A+G  +    E  E    V  R E     +    I   Y    NSL 
Sbjct: 261 ---NARIVEAFCAAMGYPAPSFTEAPE----VAMRLEVKDGINDSVLINDAYNLDLNSLA 313

Query: 371 MILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + L  +  +  S R  +V             + G++A  +A   + T
Sbjct: 314 LALDYLHNVALSRRRTLVLSDIAQSGLTDDELYGRVAGMVARAGVDT 360


>gi|238898844|ref|YP_002924526.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259509775|sp|C4K735|MURC_HAMD5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229466604|gb|ACQ68378.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 493

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 128/420 (30%), Gaps = 49/420 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +          I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAIPEDNPEILAAHEARIPVIQRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I  ++GL    +      ++              L  +   +     +  S 
Sbjct: 132 TTTAMVASIYAQAGLDPTFVNGGLIKAAGKH---------AQLGSSRYLIVEADESDASF 182

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q    +       F   LP    AI+ 
Sbjct: 183 IH------------LQPLVAIVTNIEADHMDTYQGNFEHLKQTFINFLHNLPFYGRAILC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   + ++ R                               +   V           P
Sbjct: 231 IDDQVIRTLLPRI-ARHITTYGFSEDADIKITGYEQKEFTSYFMLERVHKPILKIQLNAP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE------FVGTNSRGGRI--Y 359
           G     NA  A  +    G++   +L+ L        RF+          N + G +   
Sbjct: 290 GRHNALNAAAAVAVATEEGVEDEHILQALSFFQGTGRRFDCLGIFPLQPVNGQQGEVMLI 349

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    +   +K  R    + R++++F                  L   DI ++ + 
Sbjct: 350 DDYGHHPTEVAATIKAARVGWPTKRLVMIFQPHRYSRTRDLYDDFVNVLSQVDILLMLEI 409

Query: 419 NPRSEDP-EKI--------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               E P   I          +  H +P  I   +  +      + L + D+++V G G+
Sbjct: 410 YSAGESPIPDISSCALCDSIRDFSHRMP--ILVTDHEKLPSLLAKQLKENDMVLVQGAGN 467


>gi|260430914|ref|ZP_05784885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414742|gb|EEX08001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 464

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 143/410 (34%), Gaps = 52/410 (12%)

Query: 68  AEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTG 122
           A  IV   +   Y   +       +  + V ++   +   FA   +  +  P  ++AVTG
Sbjct: 68  ASLIVSPGIPHLYPEPNPVVAAALDAGVPVDNDIGLYFRSFAGPEWNNYDTPPRVIAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ A+ +  I   +G  +   G                         L        
Sbjct: 128 SNGKSTTAALIHHILTEAGREAQLAGNIG-------------------RGVLDIDPGGDG 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           + V +E SS+  +  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 169 SVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFSEGGPDRA 226

Query: 243 PAIIYADDA--YSKEVMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNKQQVTISV 295
              +   +    + ++ + A +     +SV     G   +    K   + + K +   S+
Sbjct: 227 VIGVDEIEGAFLAGQLAEGAGDDRVIRVSVARKLAGPGWQVFARKGFLSEYRKGRQAASI 286

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + +D      LPG     NA  A   C A+G+   ++ + L     +P R + V   + G
Sbjct: 287 DLRDIK---GLPGTHNHQNACSAYAACRALGLAPKMIEDALHSYPGLPHRSQ-VIAEANG 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
                D   T+  ++  +K +      R I     G +++ G   +       L    I 
Sbjct: 343 VTFVNDSKATN--VDSAVKALGAFKKIRWIC---GGLEKEGGIAALNDATDEVLCAYVI- 396

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   +      ++              EA+  A+      + +++A
Sbjct: 397 ------GREAAAFAMQLS---VETRVCTTMAEAVEQAMRDAAPGETVLLA 437


>gi|323494203|ref|ZP_08099317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
 gi|323311544|gb|EGA64694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
          Length = 451

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 119/366 (32%), Gaps = 40/366 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F                
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVS------------- 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D     +A     
Sbjct: 147 --ARLGESVFFVVEADEYDSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P     +    D   ++V+ R           G QG +   K +       Q
Sbjct: 205 HHLV-RTVPGNGRILAPKQDMDLEDVLSR--GCWSETEFSGKQGDWQAEKLIAD---GSQ 258

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G++   + + L G+  V NAL+A      +G+   L  E L K      R E  
Sbjct: 259 FKVFFQGEEVGIVNWDLVGDHNVDNALMAIAAARHVGVTPDLACESLAKFINTKRRLELK 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGG-DRDQGKRPIMGKIA 406
           G    G  +Y D+AH   ++E+ L  +R       +II V         +G        +
Sbjct: 319 G-EVNGVTVYDDFAHHPTAIELTLGGLRNKVGDDNKIIAVLEPRSATMKRGVHKDTLAAS 377

Query: 407 LDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVL 462
           L  AD   +         PE I     +I        +  + ++  +   +      D +
Sbjct: 378 LAKADEVFLYQ-------PESIEWSVEDIARQCQQPAQVSDSVDQLVDKIVSSAKSGDHI 430

Query: 463 VVAGKG 468
           +V   G
Sbjct: 431 LVMSNG 436


>gi|126649728|ref|ZP_01721964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
 gi|126593447|gb|EAZ87392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
          Length = 449

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 113/352 (32%), Gaps = 43/352 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + +  +      +    G   T++               +   L
Sbjct: 112 APFIGITGSNGKTTTTTLIFDMLNNGSKNPLIAGNIGTVA---CGVAKEANEDDIIVTEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                     K      TNL   H+DYH T   Y  AK    
Sbjct: 169 SSFQLMG-----------------TKTFKPKISILTNLYDAHLDYHGTFDNYAEAKFA-V 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +    I  AD      V+  A  +  + +     G+           +  + TI 
Sbjct: 211 TRNQDESDYFIYNADQP---IVVGYAAQSNAQKIPFSSNGR------TVNGISADETTIY 261

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G+ +       LPG+  + N L A   CI +G D   + E L     V  R +FV   
Sbjct: 262 WQGEPYMDRANIALPGKHNLENILAAVAACILVGCDKGKMEEVLATFGGVRHRTQFV-RE 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G +IY D   T+      L     + + +  V+   GG         +      +  +
Sbjct: 321 WNGRKIYNDSKATN-----CLATKSALDAFQAPVILLAGGLDRGHSFEELRSSMNHVKGV 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +   R  +  K       G+   +   N  +A+  A  M  + D++++
Sbjct: 376 VAFGETGLRFVEFAKSC-----GVQQTVIAQNVEDAVHYAAPMSAEGDIILL 422


>gi|99034316|ref|ZP_01314355.1| hypothetical protein Wendoof_01000846 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 264

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 124/276 (44%), Gaps = 60/276 (21%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE------ 54
           MKL++L++          +I  + + + +I  V+ +   ++ G++FV +           
Sbjct: 1   MKLRELLH----------NIIDVNF-DIEIKGVTCNPNRVKEGYLFVCVSAVSFQRVTLE 49

Query: 55  ----------------DGHLFIPQAIAQGAE--AIVVSSAYSLQDF-------------- 82
                             H  +   I QG +   I V      ++               
Sbjct: 50  SRKPACIQIFLTESQYHAHDCVDVVI-QGTKKDVIPVLDYLDPENLIANEHTKQLHNKNW 108

Query: 83  ---SATIRSNTP---ILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQ 135
              SAT  +NTP   +L   N ++      SR Y  K P+ + AVTGT+GK+SV  F +Q
Sbjct: 109 IPVSATCMTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQ 168

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTT---PSPIYLAKALSYLSSQGVTHVSVEASSH 192
           I Q SG ++  IG   T  +  +++       P    L   L  ++S+ V  +++EASSH
Sbjct: 169 IWQNSGYNAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSH 228

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           G+DQ+R+ G++  A +FTN  +DH+DYH++   YF 
Sbjct: 229 GIDQYRIHGLRFTAAAFTNFSQDHLDYHKSIDEYFE 264


>gi|300214728|gb|ADJ79144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus
           salivarius CECT 5713]
          Length = 458

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 100/262 (38%), Gaps = 18/262 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+   HIDYH T++ Y NAKMR+      +    ++  D+   +E+ +R+  
Sbjct: 181 HPKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQT-ENDYFVVNWDNEEWQELSQRSKA 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +G      ++      + + ++              +PG   V NAL A  + 
Sbjct: 240 KIVPFSRLGKSKDGAYVADGYLFYKEDKIM-------PVDNIKVPGTHNVENALAAIAVA 292

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G  +  + E L     V  R ++V T   G + Y D   T+  +E   K +      
Sbjct: 293 KIFGKSNEDIKEVLTTFSGVRHRTQYVTT-LNGRKFYNDSKATN--MEATEKALAGF--N 347

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             +V+   G DR      +   +   +  + +  +    + D      +   G+   I+ 
Sbjct: 348 NTVVLLAGGLDRGFTFEKLEPSLKNKVHAMIVFGE----TADLMAKAGK-EAGVEKIIKT 402

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            + + A+  A ++ N+ DV+++
Sbjct: 403 KDAVSAVPEAYKVSNEGDVILL 424


>gi|85707193|ref|ZP_01038279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
 gi|85668247|gb|EAQ23122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
          Length = 465

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 140/414 (33%), Gaps = 49/414 (11%)

Query: 63  AIAQGAEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENI 117
           A+ + A  IV   +   Y   +          + V ++   F    A+  +G       +
Sbjct: 63  ALDRVASLIVSPGIPHLYPAPNRVIVAAQAAGVPVDNDIGLFFRSLATDDWGGFDVTPKV 122

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GKS+ ++ +  +   +G ++   G                         L   
Sbjct: 123 IAVTGSNGKSTTSALIHHVLVEAGRTAQLAGNIG-------------------RGVLDID 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +    V +E SS+  D  R   +      FTN   DH+D H     YF AK RLF E 
Sbjct: 164 PPEDGGVVVLELSSYQTDLAR--ALTPDVAVFTNFSPDHLDRHAGLGGYFAAKRRLFAEG 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            P  +   +  D+   + +  +        RV+ +    K                    
Sbjct: 222 GPDRAVIGV--DEPEGQYLAGQMAEGPNDDRVIRISVDHKLTGSGWSVFARKGFLSEYRH 279

Query: 296 EGKDFDFLFP----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +           LPG     NA  A   C  +G+   ++   L     +P R + V  
Sbjct: 280 GRQVGSIDLRGVKGLPGSHNHQNACAAYAACRTLGLAPRVIEAGLHSYAGLPHRSQRVAE 339

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             + G I+V+ +  +N ++  LK ++   + R I     G ++D G   +   +A     
Sbjct: 340 --KDGIIFVNDSKATN-VDSALKALQAFENIRWIC---GGLEKDGGLAGLAPGLAHVRKA 393

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I         +       +  G           +A+ +A+      DV+++A
Sbjct: 394 YVI-------GREAAGFARAL--GTVESEVCTTMAKAVASAMSDAESGDVVLLA 438


>gi|296129443|ref|YP_003636693.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas flavigena DSM
           20109]
 gi|296021258|gb|ADG74494.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas flavigena DSM
           20109]
          Length = 895

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 121/364 (33%), Gaps = 36/364 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVSSA    +          + V+  +    +L A R       + +AV G  GK++ +
Sbjct: 472 LVVSSAVRSTNPEVVRARERGVPVLHRSEALAALMADR-------DAVAVAGAHGKTTTS 524

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +      +G            ++             ++A+A     S           
Sbjct: 525 GMLAAALVHAGADPSFAIGGVVRATAGTLGGARHGDGPFVAEADESDGSFLAYE------ 578

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                         +    TN+  DH+D++ T++ +  A    F + +      +  ADD
Sbjct: 579 -------------PLVAVVTNVEPDHLDHYGTRERFEAA-FERFADRVRDGGLLVACADD 624

Query: 251 AYSKEVMKRAH------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
             +  ++              R             +       + +V +S   ++     
Sbjct: 625 PGAARLVAAVRHRLTERGVALRTYGTSADADVRVGESRSTPDGRWRVVLSPRDEEPVTLH 684

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G     +A  A      +G+ SA     L+       RFE  GT + G R+  DYA
Sbjct: 685 LQVAGAHNALDAAAAWCALRRLGVGSAEAAAGLDDFVGTGRRFEDRGTAA-GVRVVDDYA 743

Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +  +L+  R +   GR++V+F                 A DLAD  +VTD     
Sbjct: 744 HHPTEVAALLRAARQVAGDGRVLVLFQPHLFSRTRTFAREFGEAFDLADAVVVTDVYAAR 803

Query: 423 EDPE 426
           EDP+
Sbjct: 804 EDPD 807


>gi|153009072|ref|YP_001370287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560960|gb|ABS14458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 467

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 141/409 (34%), Gaps = 58/409 (14%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A V+S    L      ++  +     + ++ +   F+     R +       +A+TGT+
Sbjct: 67  AAFVLSPGVPLTHPKPHWTVDLAHAAGVEIIGDVELFVRE---RNHIAPDCPFIAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  I + SG      G   T                     L+    Q    
Sbjct: 124 GKSTTTALIAHIIKASGRDMQLGGNIGT-------------------AILTLEPPQANRF 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL          A
Sbjct: 165 YVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA----SDTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDF 302
           I+  DD Y + +  R +  G  V+ +  +      +      +   Q   I  E    + 
Sbjct: 219 IVGVDDDYCEAIADRLYRDGVHVVRISKERHLGKGYFADGAKLLWSQDGEID-EIASLEG 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           +  L G     NAL A   C+++G+    +   L+    +  R E VG   +   +    
Sbjct: 278 IGSLRGAHNAQNALAAVVACLSVGLSLEEIDAGLKSFPGLAHRMEQVGHRGKVLFVNDSK 337

Query: 363 AHTSN----SLEMILKNIRTITSGRII---VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           A  +     +L   L+NI  I  G      +    G      K  ++G+ A   A  A +
Sbjct: 338 ATNAEATAPALSSFLQNIYWIAGGVPKAGGIASLAGFFPRIAKAYLIGEAAAQFA--ATL 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D  P          EI   +   +E      A R A      + V+++
Sbjct: 396 GDAAPF---------EISDTLAVAVEH-----AARDAGNDAAPEPVVLL 430


>gi|82703611|ref|YP_413177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
 gi|122063250|sp|Q2Y636|MURD_NITMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|82411676|gb|ABB75785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
          Length = 473

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 140/398 (35%), Gaps = 34/398 (8%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + I +S    L +          I VV +   F         G     ++ +TG++GK
Sbjct: 67  GVDLIAISPGLPLSEPLVQQALKEGIPVVGDMELFACAVGGTGGGMP--KLVGITGSNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V +    + +++G      G    I     D  +       + +A             
Sbjct: 125 TTVTAMTGAMLKKAGWDVEVAG---NIGPAVLDALMRREDTGKMPQA-----------WV 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+      + L A +  N+  DH+D +   Q Y  AK R+F  L   E   I+
Sbjct: 171 LELSSFQLE--TTKSLGLDAAAVLNVSEDHLDRYAGMQEYAAAKARIF--LGDSEGVQIL 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   +++           L+         L +        Q    +          +
Sbjct: 227 NGDDPVVRQMTLAGRPHVTFSLATPQSADDFGLLREGGDTWLMQGDTRLMDAR---ELAI 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NAL A  LC A+ +    +L+ L +   +P R E V   S G   Y D   T+
Sbjct: 284 TGRHNCANALAALALCRALAVPFEPLLQALREFRGLPHRVEKVAAFS-GITFYDDSKGTN 342

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +   +  ++ +  G+ +V+   G  + Q   P+   I      + ++        D E
Sbjct: 343 --VGATVAALKGL--GQPVVLIAGGDGKAQNFSPLAAPIGEHGRAVVLI------GRDAE 392

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI   I              EA+R + ++  + D +++
Sbjct: 393 KIAVAINECGVPLHRAQTMEEAVRKSFQLAREGDAVLM 430


>gi|238752432|ref|ZP_04613909.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709365|gb|EEQ01606.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 507

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 139/423 (32%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 95  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 147

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 148 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 199

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 200 -------------HLQPMVAIVTNIEADHMDTYQGDFGNLKQTFINFLHNLPFYGRAVMC 246

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  ++         
Sbjct: 247 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLN 303

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G   
Sbjct: 304 APGRHNALNAAAAVAVATEEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAM 363

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI+++F                  L   D+ ++ 
Sbjct: 364 LVDDYGHHPTEVDATIKAARAGWPDKRIVMIFQPHRYTRTRDLYDDFANVLSQVDVLLML 423

Query: 417 DDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D     E P            IR     G    I   +         +ML+  D+++V G
Sbjct: 424 DVYAAGEPPIPGADSRSLCRTIRN---RGKVDPILVSDSETVPEVLAQMLDGDDLILVQG 480

Query: 467 KGH 469
            G+
Sbjct: 481 AGN 483


>gi|315498851|ref|YP_004087655.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Asticcacaulis
           excentricus CB 48]
 gi|315416863|gb|ADU13504.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Asticcacaulis
           excentricus CB 48]
          Length = 488

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 100/312 (32%), Gaps = 39/312 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++        + V+ +   F     +    + P   +A+TGT+GKS+  + +  I
Sbjct: 99  HPEPHWTVKAAQEANVPVIGDIELFARTLNALPEKQRP-KTVAITGTNGKSTTTALIGHI 157

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G     IG    I                    L        T   +E SS+ LD 
Sbjct: 158 LKAAG-RDAHIGGNIGIGV------------------LDLPEMHAGTIYVIETSSYQLDL 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +       N   DH+D H     Y  AK R+F      E  A+I  DD +S+ V
Sbjct: 199 --TQTFRPDVAVLMNFSPDHLDRHGDMDGYIKAKKRIFLNQTAHE-TAVIGTDDEWSQAV 255

Query: 257 MKRAHNAG---------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +                 R L  G       +        +Q + +         +  L 
Sbjct: 256 VTEMTAHHSVNLIPISSRRTLGRGVYALNGVIYDATTDRARQIIDLKT-------VRTLT 308

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA  A   C A+G+   +++  +     +  R + +G       I    A  ++
Sbjct: 309 GRHNWQNACAAYSACRALGLTVEVIVAGIRSFPGLDHRMQEIGRIKNVRFINDSKATNAD 368

Query: 368 SLEMILKNIRTI 379
           +    + +  + 
Sbjct: 369 AARQAMSSYDSF 380


>gi|227499842|ref|ZP_03929935.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
 gi|227217951|gb|EEI83224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
          Length = 438

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 133/352 (37%), Gaps = 37/352 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+++TGT+GK+S  S V  I   + + S  +G                        
Sbjct: 95  PQAKIISITGTNGKTSSTSMVNHIVNEACIKSIAVGNIG-------------------EG 135

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +      + E SS  L  H            TN+  DHID+H + + Y N+K+ 
Sbjct: 136 ILWQMYNNKDAFFACELSSFQL--HDTKTYHPHIACITNITEDHIDWHGSFEDYINSKLN 193

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + +    +    II  +D   ++  K+ + A     S   + +     K  AI+ K +  
Sbjct: 194 ITKNQ-DENDFLIINHEDKILQDH-KKDYKAQVYEFSSKNEVERGAYLKDGAIYLKDKEE 251

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I V   D      + G     N +VA       GI    +++ L     +  R E+V T 
Sbjct: 252 IKVIDVD---ELSVIGSHNYENIMVALLSTYLFGIKIQDIIKGLRSFKAIEHRLEYVDT- 307

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            R  +IY D   T+  ++  +K I + T   II+    G D+       +     +   +
Sbjct: 308 IRKVKIYNDSKGTN--VDSSIKAIESFTEPLIII--AGGYDKHIDYTDYVKSFKKNGKLM 363

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+       +  +K++    +    + E  +  +AIR   E   + DV+++
Sbjct: 364 VIM------GQTKDKLKKLCENYQVAYKEAEDMEDAIRICFENAKEGDVILL 409


>gi|329895281|ref|ZP_08270923.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
 gi|328922403|gb|EGG29746.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
          Length = 479

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 138/430 (32%), Gaps = 50/430 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
            S+A +  +       +  I  V   +  L+      +G      +AV GT GK++  S 
Sbjct: 81  TSTAVAPDNVEYQAARDARIPTVPRAQM-LAELMRYRHG------IAVAGTHGKTTTTSM 133

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +   +GL      PT  I      +                 +  G +H  +  +  
Sbjct: 134 IASVFAAAGLD-----PTYVIGGRVNQSGSN--------------AKLGASHYLIAEADE 174

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                    +  +    TN+  DH+D +             F   LP    A++  DD  
Sbjct: 175 SDASFL--HLTPMVSVVTNIEADHMDTYGGDLQQLRKTFIEFLHNLPFYGSAVLCLDDPE 232

Query: 253 SKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEF 310
            K ++ + + +   +L+ G        ++ + A        +              PG  
Sbjct: 233 IKALIPQINRS---ILTYGQDPDADYCIRSIKAAGAASDFQLQTPNHGVLALRVNSPGLH 289

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--NSRGGRI-YVDYAHTSN 367
            V NA   A + +  G+  A V + L     V  RFE +G   ++RG  +   DY H   
Sbjct: 290 NVLNAAATAAVALDEGLPIAAVQDGLANFAGVGRRFEQLGRLQHARGQAVLVDDYGHHPT 349

Query: 368 SLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--- 423
            +E  L    +     R+++V+                  L   D+ I+ D     E   
Sbjct: 350 EVEATLNSAAQVWPESRVVMVYQPHRFTRTRDLYDDFVRVLSRCDVLILLDVYAAGEAEI 409

Query: 424 ---DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG------HETVH 473
              D + +   I   G+   I      E       +L   DVL+  G G      H  V 
Sbjct: 410 PGADSKSLARSIRQRGLVDPIYAAGIDEVPELLASILAADDVLITQGAGNITSLAHNLVQ 469

Query: 474 IVTNGEKKMS 483
           +   G K + 
Sbjct: 470 VDYEGLKHVH 479


>gi|53803416|ref|YP_114845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
 gi|62900496|sp|Q604V5|MURD_METCA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53757177|gb|AAU91468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
          Length = 459

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 86/456 (18%), Positives = 158/456 (34%), Gaps = 72/456 (15%)

Query: 35  SDSRHIQAG--WI---F--VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            DSR    G   +   F  V +      G  F   A+A  A  +VVS   SL        
Sbjct: 51  MDSRLAPPGLQDLREAFPDVPL----FLG-DFSRSALAA-ATHLVVSPGLSLDLAEIRES 104

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               + V  +    L LFA  +       ++A+TG +GKS+V + V  + + +G+++   
Sbjct: 105 HRCGVRVFGD----LDLFACCVR----APVVAITGANGKSTVTTLVGLMAKAAGVNAAVG 156

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G   T                     +  L         +E SS  L+  R +  +    
Sbjct: 157 GNLGT--------------------PMLDLLDAAAELYVLELSSFQLE--RSELFEADVA 194

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +  N+  DH+D +    +Y  AK R+F      E   ++  DD     + +    A    
Sbjct: 195 TVLNISPDHMDRYPDLASYAEAKRRVFRG----EGLMVLNQDDPLVAAMYRPGRRAVRFG 250

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAI 325
           L  G +  +           + +  +  +G          + G   + NAL A  +  A 
Sbjct: 251 LGSGDELDY------SLARWEGRAWLLAKGVPLLPADEVRIKGRHNLANALAAVAIADAC 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G D   ++  L     +  R ++V     GG  YV+ +  +N +   +  +  +     +
Sbjct: 305 GFDRQAMVGVLRTFPGLDHRMQWVA--DIGGVAYVNDSKATN-VGACIAALSGLEGK--V 359

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V+   G  +      ++   A  L    ++  D P       +  E++ G+   I     
Sbjct: 360 VLIAGGDGKGADFSSLVPVAAEKLRAAVLMGRDGP-------LIDEVLKGVVPTIRVKTM 412

Query: 446 IEAIRTAIEMLNKQDVLVVAGKG-----HETVHIVT 476
            EA+R A  +    D +++A        +E      
Sbjct: 413 FEAVRAARGVAQSGDTVLLAPACASLDQYEDYQERG 448


>gi|325286923|ref|YP_004262713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
 gi|324322377|gb|ADY29842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
          Length = 444

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 126/352 (35%), Gaps = 38/352 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++    V  I +  GL     G                          
Sbjct: 102 ATIIGITGSNGKTTTTMMVNHILKEEGLHVGMAGNIG-------------------DSYA 142

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             +S     +  +E SS  LD   +   K      TN+  DH+D +      Y  +K R+
Sbjct: 143 KMVSENNFDYYVLEISSFQLD--GIVDFKPHIAIITNITPDHLDRYNYEFDNYITSKFRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             E   ++   I  ADD      +++ H    +++      +F   + VC  +NK  +T 
Sbjct: 201 -AENQTEDDYLIYDADDEVLVSWLEK-HPVKSKLIPFSLTKQFK--EGVCLKNNKIHITT 256

Query: 294 SVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                +       L G+  + N + A+     + I  A +   +E       R E V   
Sbjct: 257 QNNTIEMATDNLALEGKHNLKNTMAASAASKLVNIRKATIRASIENFQGAAHRLESVLKI 316

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    +    A   N        + ++ S  + +V   G D+    + +M  +   +  I
Sbjct: 317 AHVHYVNDSKATNVN---ATYYALESMKSATVWIV--GGVDKGNDYKSLMPLVREKVKAI 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN       KI  E  + +   +E  +  EA++ A ++  + D +++
Sbjct: 372 ICLGVDN------SKIIEEFGNVVDLLVETKSMNEAVKMAYKIGQRGDTVLL 417


>gi|308174670|ref|YP_003921375.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607534|emb|CBI43905.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554600|gb|AEB25092.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens
           TA208]
 gi|328913005|gb|AEB64601.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           LL3]
          Length = 432

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 130/401 (32%), Gaps = 59/401 (14%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S  + +  +    P++      KFL+ +  +         +AVTG  GK+S    +  
Sbjct: 71  PDSHPEIAKALAEGIPVI---RYHKFLAEYMKKY------TSVAVTGAHGKTSTTGLLAH 121

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + Q++  +SF IG   T             +  Y    LSY                   
Sbjct: 122 VMQQAKPTSFLIG-DGTGKGNESSEYFVFEACEYRRHFLSY------------------- 161

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSK 254
                  +      TN+  DH DY       F+A    F+ + L      I   DD Y  
Sbjct: 162 -------QPDYAIMTNIDFDHPDYFANIDDVFDA----FQNMALQVNKGIIACGDDEYLP 210

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVY 313
           ++     N        G +  F   + +          + V    +D F  P  G   V 
Sbjct: 211 KIHA---NVPVVYYGTGEENDFQ-ARNIVKNTEGTTFDVFVRNTFYDTFYIPAYGHHNVL 266

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L    LC    ID  ++   LE    V  RF      S+   +  DYAH    +++ +
Sbjct: 267 NSLAVIALCHYEEIDVNMIKLGLESFGGVKRRFNEKVIGSQ--VLIDDYAHHPTEIKVTI 324

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAE 431
           +  R       II VF                 +L  AD   + D      E+  K+   
Sbjct: 325 EAARQKYPEREIIAVFQPHTFTRTQSFLDEFAESLSAADRVYLCDIFGSARENVGKLT-- 382

Query: 432 IIHGIPGFIEKGNRIEAIR---TAIEMLNKQDVLVVAGKGH 469
               I    EK +  E I    T++   ++  VL+  G G 
Sbjct: 383 ----ITDLQEKIDNAELIEENDTSVLKAHENAVLIFMGAGD 419


>gi|300726288|ref|ZP_07059741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
 gi|299776485|gb|EFI73042.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
          Length = 443

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 126/363 (34%), Gaps = 42/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKTAGYDAGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT- 222
                        ++ +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 --------SLALQVAEEPHEYYIIELSSFQLDN--MYDFRANIAILLNITPDHLDRYDNK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y +AKMR+ +    ++S      D    KE+ K          S   +   I   + 
Sbjct: 190 FENYADAKMRILQNQTQEDSFIYWNDDPVIQKELNKFKITGRACPFSEIKEKNVIGYIED 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +      +E  D      L G+  +YN+L A       GI    + + L     V
Sbjct: 250 GKYIIEHPTPFCMEQDDMS----LTGKHNIYNSLAAGIAADIAGIKKEDIHKGLSSFPGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V     G +   D   T+  ++     + ++ +  I+++   G D+      I 
Sbjct: 306 EHRLEKV-CKVDGVQYINDSKATN--VDACWYALESMKTPTILIL--GGKDKGNDYSQIY 360

Query: 403 GKIALDLADIAIVTDDNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             +      +  +  DN +  E+ ++       GIP   +     E ++   ++    D 
Sbjct: 361 DLVKEKCRGLVYLGADNKKLHENFDQ------FGIP-VKDTHGMKECVQACRDLAQPGDT 413

Query: 462 LVV 464
           +++
Sbjct: 414 VLL 416


>gi|94501898|ref|ZP_01308408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
 gi|94425951|gb|EAT10949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
          Length = 446

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 139/391 (35%), Gaps = 56/391 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I+ S    L         +  + VV + + F               I+A+TG++ KS
Sbjct: 71  AARIIASPGIPLATDEIQRAIDAGVPVVSDIQVFAEAA--------NAPIIAITGSNAKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ ++ GL +   G   T +                      L +  +    +
Sbjct: 123 TVTTLVGEMAKQCGLKAAVGGNLGTPA--------------------LELLNSDIDVYVM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+    + +     +  N+  DH+D + + + Y+  K ++F         A+I 
Sbjct: 163 ELSSFQLEA--TEHLNAKVATVLNISPDHLDRYDSYEGYYQTKYKIFNGC----EKAVIN 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  ++   K  +       S+  +G    L +           + VEG     +  L 
Sbjct: 217 LDDNLAQP--KTLNCPEQIGFSIDGKGADFVLDRTAQPWQ-----LIVEGDALLSVDQLK 269

Query: 308 GE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            +      NAL A  L    G+D   +L+ L+    +  R +++                
Sbjct: 270 IKGLHNYSNALAALALGHGFGLDMDGMLKALKSFPGLDHRCQWIKQVDEVDFYNDSKGTN 329

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             + E  LK +    + RI+++   G  +D   + +   I   ++ + +   D       
Sbjct: 330 VGATEAALKGLGPEYAKRIVLML-GGVGKDADFKVLRPVIDQYVSKVIVYGQD------- 381

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           + I A+ + G+       +R E+   A EM 
Sbjct: 382 QDIIAKDLSGVD-----LDRAESFEQAFEMA 407


>gi|56551725|ref|YP_162564.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|62900668|sp|Q5NPA7|MURD_ZYMMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56543299|gb|AAV89453.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 441

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/401 (18%), Positives = 134/401 (33%), Gaps = 63/401 (15%)

Query: 67  GAEAIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123
           G  A VVS    + +   A +     I ++ +   F    A   + +H     ++ +TGT
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIGDIELFAQ--AHGFWERHGRRCPVVGITGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +  I + +GL +   G                         L+        
Sbjct: 131 NGKSTTTALIHHILKEAGLPTLMGGNIGL-------------------PLLAADPLPDGG 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +       TN+  DH+D H   + Y  AK RLF  L      
Sbjct: 172 VYVLELSSYQIDLTFT--LDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFL-LQSSPHY 228

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I  DD  S+ + K++      V +     +                            
Sbjct: 229 AVIATDDIPSQVIAKQSAAHLVTVHADNISAEDQ-----------------------VNW 265

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA++A  +   +GI   ++ + L     +P R + +G     G +++D +
Sbjct: 266 PNLQGPHNAQNAVLAMAVAHILGISDDVISKALISYAGLPHRMQKIGERR--GVLFIDDS 323

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +N   M              ++ G     D          A         T       
Sbjct: 324 KATN--AMATAPALAAFPAIHWILGGVPKTADLDP-----CKAFYNHIRQAYT-IGQAGP 375

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  ++  E   G+   +E G   +A+R A E     +V+++
Sbjct: 376 DYAQLLRE--AGV-NVVECGTLEKAVRLAAEEAQPDEVVML 413


>gi|116618590|ref|YP_818961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271210|sp|Q03W34|MURD_LEUMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116097437|gb|ABJ62588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 449

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 124/350 (35%), Gaps = 43/350 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++  S ++ + +  G +    G      S              L +  +
Sbjct: 112 RLIAVTGSNGKTTTTSLIRDMLKADGQNVITAGNIGVPVSEVV---------FDLTREDT 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L         +E SS  L    L  I+      TN+  +H+DYH+T+  Y  AK R+  
Sbjct: 163 LL---------LELSSFQLL--GLPDIQPDIALVTNIFSNHLDYHKTRANYVAAKFRI-T 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ AD    ++  K  +    +VL      +   +       +   +T++ 
Sbjct: 211 RHQNANQYLVLNAD---GQDTEKFKNETEAQVLEFSRTKQHFPVA-----FSNGNLTLTD 262

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E         L G     N L A  +    G+    + E L+    V  R +++ T    
Sbjct: 263 EIVMPTKDIKLVGPHNQENILAAVTVANLAGVSKPAIREVLKTFSGVAHRLQYLFTAGD- 321

Query: 356 GRIYVDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                 Y  + +  +E     + +     I +  G G +R      ++  +    A IA+
Sbjct: 322 ---VKYYNDSKATDIEATQTALDSFDCPTIWI--GGGLERGDDLERLLPNLKNVKAVIAV 376

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E  +KI           I   +   A   A+++ +  DV+++
Sbjct: 377 -------GETQQKIVTLAREAGKPVIAVTDVEHAAPVAVQLASPGDVVLL 419


>gi|21282795|ref|NP_645883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300912253|ref|ZP_07129696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|30316062|sp|Q8NX35|MURD_STAAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21204233|dbj|BAB94931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|300886499|gb|EFK81701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 449

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    I 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFII- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +    A +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMENVRAMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   K            IE  N  +A+    +++   DV+++
Sbjct: 374 VF-------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|326797502|ref|YP_004315321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
 gi|326548266|gb|ADZ76651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
          Length = 457

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 147/430 (34%), Gaps = 51/430 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ ++ S     +           I V+         FA+R         + +TG++GKS
Sbjct: 74  ADLVIKSPGIPEKAGIVQALRKQRIPVIGEI-----EFAARYTD---AKTVCITGSNGKS 125

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +       I Q++G++    G                            ++++      +
Sbjct: 126 TTTMLTYHILQKAGINVGLAGNIG-------------------KSFALQVATEQYEVYVL 166

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  LD   +   +       N+  DH+D +    + Y N+K R+       +     
Sbjct: 167 EISSFMLDD--MYDFRADIAVLLNITPDHLDRYDYKMENYVNSKFRITRNQRENDIFIYC 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--- 303
             D   +K +  +  NA     S+  + ++        ++ ++++ I++  ++   +   
Sbjct: 225 KDDPETNKALTAKEINATMYPFSLTEEVQYGA-----YLNEEKEIVITLPNQERFIMSIN 279

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+  VYN + +  +     + +  + E +     +P R E V   S    I    
Sbjct: 280 DLALQGKHNVYNNMASGIVAKVWELRNESIRESMGDFVNIPHRLEHVTKISGIEFINDSK 339

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A   NS+   L+++        IV+   G D+      +   +   +  I  +  DN   
Sbjct: 340 ATNVNSVWYALESLP-----GKIVLIMGGVDKGNDYSMLRELVQSKVRGIVCLGKDN--- 391

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
                I           +      EA++ A  +  K D ++++     +  +  N E + 
Sbjct: 392 ---RNIHNAFEADTDVIVNTQTMSEAVQIAYHIAQKGDTVLLS-PACASFDLFKNYEDRG 447

Query: 483 SVDCDIIREI 492
                 +RE+
Sbjct: 448 DQFKAAVREL 457


>gi|302332788|gb|ADL22981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 449

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    + 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +    A +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMENVRAMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   K            IE  N  +A+    +++   DV+++
Sbjct: 374 VF-------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|301336328|ref|ZP_07224530.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum MopnTet14]
          Length = 802

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 136/395 (34%), Gaps = 53/395 (13%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G K   G+    + I +GA  +V  S  S ++       N    ++    + L+  A  
Sbjct: 47  KGAKFFLGNR--EEHIPEGAV-VVYGSGISQENPEFLSAKNRGHRLIHRA-ELLAELAK- 101

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 +  + VTG+ GK++V+S +  I Q+ G +         I    +D    +    
Sbjct: 102 -----DQISIFVTGSHGKTTVSSLITAILQKLGTTPSFA-----IGGLNEDGINGSS--- 148

Query: 169 YLAKALSYLSSQGVTHVSVEAS-SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                       G  +   EA  S G  QH L          TN+  +H+      +   
Sbjct: 149 ------------GFEYFVAEADESDGSIQHYL----PEFSVITNIDDEHLSNFGGDRGAL 192

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIH 286
            A ++ F     +        D +  +  +K          + G+     +H+       
Sbjct: 193 LASLQDFAFRTRRS--CWYNGDCSLLRSSLKGN--------TFGFSSSCDLHILSYRQEE 242

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +   T    G  + D    L GE  V NA  A G+ +++GID   + + L +   V  R
Sbjct: 243 WRVFFTAQYRGILYEDVEVQLAGEHNVMNAAAAMGIALSLGIDELTIRDALREFSGVQRR 302

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            +    +        DYAH  + +   L+ +R    G+  V+  C   R    +   G+ 
Sbjct: 303 LQRKNVSET-FLFLEDYAHHPSEISCTLQAVRAAV-GQRRVLAICQPHRFSRLKECWGRF 360

Query: 406 --ALDLADIAIVTDDNPRSEDPEKI-RAEIIHGIP 437
             A   AD   +T+     E  E +   E+   I 
Sbjct: 361 PSAFKYADEVFLTEVYGAGEREEAVPYQELAQSIS 395


>gi|49483346|ref|YP_040570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425237|ref|ZP_05601662.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427897|ref|ZP_05604295.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430530|ref|ZP_05606912.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433291|ref|ZP_05609649.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436133|ref|ZP_05612180.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903735|ref|ZP_06311623.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905499|ref|ZP_06313354.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908474|ref|ZP_06316304.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910756|ref|ZP_06318559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913959|ref|ZP_06321746.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924004|ref|ZP_06331680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|283957926|ref|ZP_06375377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500992|ref|ZP_06666843.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509950|ref|ZP_06668659.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526539|ref|ZP_06671224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295427669|ref|ZP_06820301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297591373|ref|ZP_06950011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|60390436|sp|Q6GHQ2|MURD_STAAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49241475|emb|CAG40161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271694|gb|EEV03832.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274738|gb|EEV06225.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278658|gb|EEV09277.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281384|gb|EEV11521.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284415|gb|EEV14535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313976|gb|EFB44368.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322027|gb|EFB52351.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325361|gb|EFB55670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327536|gb|EFB57819.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330791|gb|EFB60305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595353|gb|EFC00317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790075|gb|EFC28892.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920611|gb|EFD97674.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095997|gb|EFE26258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467400|gb|EFF09917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128027|gb|EFG57661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297576259|gb|EFH94975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438440|gb|ADQ77511.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315194069|gb|EFU24462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 449

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    + 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +    A +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMENVRAMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   K            IE  N  +A+    +++   DV+++
Sbjct: 374 VF-------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|15924173|ref|NP_371707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926766|ref|NP_374299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650295|ref|YP_186059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus COL]
 gi|82750790|ref|YP_416531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus RF122]
 gi|87160865|ref|YP_493774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194889|ref|YP_499689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267675|ref|YP_001246618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393733|ref|YP_001316408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221305|ref|YP_001332127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979504|ref|YP_001441763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509360|ref|YP_001575019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140645|ref|ZP_03565138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253733578|ref|ZP_04867743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005970|ref|ZP_05144571.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795761|ref|ZP_05644740.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|258415985|ref|ZP_05682255.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|258419732|ref|ZP_05682699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|258438774|ref|ZP_05689927.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|258444520|ref|ZP_05692849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|258447647|ref|ZP_05695791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|258449489|ref|ZP_05697592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|258451881|ref|ZP_05699902.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|258454868|ref|ZP_05702832.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|262048756|ref|ZP_06021638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|269202798|ref|YP_003282067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282892669|ref|ZP_06300904.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|282916433|ref|ZP_06324195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282919964|ref|ZP_06327693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282929228|ref|ZP_06336803.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|283770245|ref|ZP_06343137.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|284024107|ref|ZP_06378505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848176|ref|ZP_06788923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|295407121|ref|ZP_06816922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|296276141|ref|ZP_06858648.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245993|ref|ZP_06929852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|304381257|ref|ZP_07363910.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|60392791|sp|P0A089|MURD_STAAM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392792|sp|P0A090|MURD_STAAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392793|sp|P0A091|MURD_STAAU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900659|sp|Q5HGP8|MURD_STAAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063260|sp|Q2FHQ4|MURD_STAA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063261|sp|Q2FZ92|MURD_STAA8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063262|sp|Q2YXD9|MURD_STAAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224766|sp|A7X1C4|MURD_STAA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|172048845|sp|A6QG83|MURD_STAAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082916|sp|A6U103|MURD_STAA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082917|sp|A5IS69|MURD_STAA9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082918|sp|A8Z3M4|MURD_STAAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2271510|gb|AAC46291.1| UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase [Staphylococcus
           aureus]
 gi|13700982|dbj|BAB42278.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246953|dbj|BAB57345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|57284481|gb|AAW36575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus COL]
 gi|82656321|emb|CAI80735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus RF122]
 gi|87126839|gb|ABD21353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202447|gb|ABD30257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740744|gb|ABQ49042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946185|gb|ABR52121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374105|dbj|BAF67365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721639|dbj|BAF78056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160368169|gb|ABX29140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253728448|gb|EES97177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789733|gb|EEV28073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|257839321|gb|EEV63795.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|257844317|gb|EEV68699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|257848033|gb|EEV72026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|257850013|gb|EEV73966.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|257853838|gb|EEV76797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|257857477|gb|EEV80375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|257860489|gb|EEV83316.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|257863251|gb|EEV86015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|259163212|gb|EEW47772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|262075088|gb|ACY11061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940677|emb|CBI49056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282319873|gb|EFB50221.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282589187|gb|EFB94284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|282594680|gb|EFB99664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282764666|gb|EFC04791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|283460392|gb|EFC07482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470393|emb|CAQ49604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ST398]
 gi|285816865|gb|ADC37352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus 04-02981]
 gi|294824976|gb|EFG41398.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|294967974|gb|EFG44002.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|297177157|gb|EFH36411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|302751006|gb|ADL65183.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340240|gb|EFM06181.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312829577|emb|CBX34419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130974|gb|EFT86958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196913|gb|EFU27256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141002|gb|EFW32849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143058|gb|EFW34848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|323440955|gb|EGA98662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O11]
 gi|323442272|gb|EGA99902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O46]
 gi|329313851|gb|AEB88264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725034|gb|EGG61530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329727477|gb|EGG63933.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 449

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    + 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +    A +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMENVRAMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   K            IE  N  +A+    +++   DV+++
Sbjct: 374 VF-------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|270159563|ref|ZP_06188219.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella longbeachae D-4968]
 gi|289165641|ref|YP_003455779.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269987902|gb|EEZ94157.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella longbeachae D-4968]
 gi|288858814|emb|CBJ12728.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Legionella longbeachae NSW150]
          Length = 454

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 122/353 (34%), Gaps = 27/353 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AV+GT GK++  S +  I  ++GL+   +     +SS  + +        ++ +A  
Sbjct: 104 QVIAVSGTHGKTTTTSMIAWILHQAGLNPGFL--IGGVSSDFKTSACLGSGKWFVIEADE 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y S+                       +       NL  DH D +    A    +   F 
Sbjct: 162 YDSAFFDKRPKFMHY------------RPRIAILNNLEFDHADIYTDLAAIQL-QFHYFL 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AI    D    EV+ R   +    LS+    ++          N     +  
Sbjct: 209 RTIPASGVAIKPCHDQALNEVIARGQYSRIEELSLDGDAQW---SAKLLEDNGSAFKVLY 265

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GK+     +PL G F V N L A    +  G+   +    LE+   V  R E V +N  
Sbjct: 266 LGKEVAKVNWPLIGRFNVENGLAALAASVNAGVSPEVAARALERFTPVKRRLE-VRSNMH 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF-GCGGDRDQGKRPIMGKIALDLADI 412
           G  +Y D+AH   ++   +  ++ +    RI  V          G        AL+    
Sbjct: 325 GITVYDDFAHHPTAIRRTVDALKGSNRHQRIFAVLEFASYTMRTGVHATEMAHALESVHG 384

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           A V +  P+  D  K      H    +    +  E +    + +   D ++V 
Sbjct: 385 AYVLE--PQDFDLHKTLD---HWTCPYTICKSHDEIVNEVSKAVQAGDAVLVM 432


>gi|94267893|ref|ZP_01291025.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [delta proteobacterium MLMS-1]
 gi|93451812|gb|EAT02562.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [delta proteobacterium MLMS-1]
          Length = 489

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 137/415 (33%), Gaps = 41/415 (9%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----------NILAVTGTS 124
            A +L+     +     ++  DN        A   Y   P+            L V GT 
Sbjct: 74  QADNLEPAPDLVIVGN-VIRADNPEALALARARLPYLSFPQALSHYFLRTKRSLVVAGTH 132

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++ AS +     ++GL+   +     I      +      P ++++   Y ++     
Sbjct: 133 GKTTTASLLATALAQAGLAPGFM--IGGIVQAFGRSSRLGDGPFFVSEGDEYDTAFFDKG 190

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                             +      T +  DH D +    A   A  RL   L+P     
Sbjct: 191 PKFLHY------------RPEIAIITGVEFDHADIYPDLAAVKAAFARLIA-LMPPHGAL 237

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           +   DD  + E+   A    C VL  G +QG    L ++         T   EGK F  F
Sbjct: 238 VACLDDPVTAELTTAA---NCPVLGYGEHQGLSWQLTELAISPGTTTFTALKEGKPFGRF 294

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG     NAL    +   +G+ +  +   L     V  R E  G  + G  +  D+
Sbjct: 295 QSRLPGRHNALNALAVIAVLEQLGLGAEAIAGALAAFTGVRRRQEVRGEVA-GVTVIDDF 353

Query: 363 AHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIV----T 416
           AH   +    L+ ++    G R++ VF    +  + +        A   AD  ++     
Sbjct: 354 AHHPTAARETLQALKAAYPGRRLLAVFEPRTNSSRRRVFQQAYSSAFGAADRVLLRVPEG 413

Query: 417 DDNPRSED---PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   +E+    E++ AE+              + +          DV+ +   G
Sbjct: 414 LEAIAAEERFSVEQLAAELCATGQPASSFATTADILAELAATTRPGDVVAILSNG 468


>gi|62178696|ref|YP_215113.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|68565665|sp|Q57TC9|MURC_SALCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|62126329|gb|AAX64032.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713149|gb|EFZ04720.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 491

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 147/434 (33%), Gaps = 61/434 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+ +   + ++    I ++   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGSQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  D       PG     NA  A  +    GID   +L  LE       RF+F+G   
Sbjct: 276 RQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R      +++++F                
Sbjct: 336 LEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKKLVMLFQPHRYTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK- 458
             L   D  ++ D  P  E P  I       +   I    +I+ I          ML   
Sbjct: 396 NVLTQVDALLMLDVYPAGEAP--IPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPV 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LTGNDLILVQGAGN 467


>gi|270159082|ref|ZP_06187738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|289166082|ref|YP_003456220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
 gi|269987421|gb|EEZ93676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|288859255|emb|CBJ13189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
          Length = 484

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 134/385 (34%), Gaps = 67/385 (17%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TGT+GKS+V + V ++ + +G      G   T      ++              
Sbjct: 105 APVIAITGTNGKSTVTTLVGEMAKAAGYKVAVAGNIGTPVLDMLNDEHQY---------- 154

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  LD      ++ IA +  N+  DH+D H T +AY  AK R++
Sbjct: 155 --------DLWVLELSSFQLDL--TYSLEPIAATILNVTPDHLDRHHTMEAYIQAKQRIY 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIH--LKKVCAIHNKQQV 291
                K   A+   DD Y+  +     +A   + LS       +   L   C+   K+++
Sbjct: 205 ----HKARVALFNRDDFYTVPMTSSHDDAKISQELSTNKTSSILREPLSHACSEREKEEI 260

Query: 292 TISVEGKDFDFLFPLPGE--------------------------------FQVYNALVAA 319
            +        F    P +                                   +NAL A 
Sbjct: 261 HLRGNVNRISFGKDAPEKNNWGLINQENKIYLAKGHTCFLPVESVLIKGVHNWFNALAAC 320

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L    GI    ++E L     +P R ++V T   G     D   T+    +   N    
Sbjct: 321 ALADIAGITQQHIIEVLTTFTGLPHRCQWVRT-LDGVDWINDSKGTNIGATISAINGIGG 379

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           +    IV+   G  +    + +   IA  +  I ++       ED +KI A + + +P  
Sbjct: 380 SMQGKIVLIAGGQGKGADFKELTQPIADFVRSIVLI------GEDADKIEAALANVVP-I 432

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
               +   A+  A       DV+++
Sbjct: 433 SRASSLDNAVEVAKLQAKPGDVVLL 457


>gi|53729118|ref|ZP_00134082.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207507|ref|YP_001052732.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975477|ref|YP_001651070.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250498|ref|ZP_07336695.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244820|ref|ZP_07526919.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249218|ref|ZP_07531215.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251540|ref|ZP_07533447.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253774|ref|ZP_07535628.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256040|ref|ZP_07537828.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258231|ref|ZP_07539974.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260470|ref|ZP_07542165.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166222951|sp|A3MY91|MURC_ACTP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706335|sp|B0BRH8|MURC_ACTPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126096299|gb|ABN73127.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875578|gb|ABY68626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302650486|gb|EFL80645.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854265|gb|EFM86471.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306858742|gb|EFM90801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861004|gb|EFM93010.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863258|gb|EFM95198.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865462|gb|EFM97357.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867691|gb|EFM99536.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869873|gb|EFN01655.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 475

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 156/445 (35%), Gaps = 56/445 (12%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R  +AG  +F+        GH    + +A GA  +V SSA    +          I V+ 
Sbjct: 58  RLAEAGAKVFI--------GHQ--AENVA-GASVVVASSAIDDSNPEVRAAKEARIPVI- 105

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              +   + A  +  +H    +AV GT GK++  + +  I   + L    +      S+ 
Sbjct: 106 ---QRAQMLAEIMRFRHG---IAVAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSAG 159

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                    +  YL   ++       + +                ++ +    TN+  DH
Sbjct: 160 ---KNAHLGASRYL---IAEADESDASFL---------------HLQPMVSVVTNIEPDH 198

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +D +        A    F   LP    A++ ADD     V++ A   G +VL+ G+  K 
Sbjct: 199 MDTYGGDFEQMKATYVKFLRNLPFYGLAVMCADDET---VIEIAPQVGRQVLTYGFSEKA 255

Query: 277 IHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +  +             +   G+  D L  +PG+    NA  A  +    GI +  +L 
Sbjct: 256 DYRIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNALNATAALAVAKEEGIANEAILA 315

Query: 335 HLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            L        RF+ +G+    +    +  DY H    +++ +K  R+   + R++++F  
Sbjct: 316 ALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARSGWENKRVVMIFQP 375

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKG 443
                           L   D  I+ +     E P      + +   I + G    I   
Sbjct: 376 HRYSRTRDLFDDFVQVLSQVDALIMLEVYAAGEAPIVGADSKALCRSIRNLGKVDPILVS 435

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  +      +++   D+++  G G
Sbjct: 436 DTDQLGEVLDQIIQDGDLILAQGAG 460


>gi|148994421|ref|ZP_01823644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|168488368|ref|ZP_02712567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|147927257|gb|EDK78291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|183573146|gb|EDT93674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|332074492|gb|EGI84968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17570]
          Length = 450

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 150/431 (34%), Gaps = 60/431 (13%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------LFASRLYGKHPENILAVTG 122
           ++   ++L   +  I  N P++      K L+           A  +       I+ +TG
Sbjct: 68  LLDEEFALMVKNPGIPYNNPMI-----EKALAKGIPVLTEVELAYLISE---APIIGITG 119

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++  + + ++   +G      G    I   A     T      L   LS     GV
Sbjct: 120 SNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQTASDKDTLVMELSSFQLMGV 176

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                                      TNL   HIDYH +   Y  AK  + +  +    
Sbjct: 177 QEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVAAKWNI-QNKMTAAD 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFD 301
             ++  +   +K++  +                F  L+KV   +    Q+    E     
Sbjct: 219 FLVLNFNQDLAKDLTSKTEATVV---------AFSTLEKVDGAYLEDGQLYFRGEVVMAA 269

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   V NAL    +     +D+  + E L     V  R +FV  + +G + Y D
Sbjct: 270 NEIGVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVD-DIKGVKFYND 328

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+  +    K +        +V+   G DR      ++  I   L  + I+      
Sbjct: 329 SKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TGLKKMVIL------ 378

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            +  E+++         ++E  +  +A R A E+  + DV++++   + +  +  N E +
Sbjct: 379 GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLS-PANASWDMYANFEVR 437

Query: 482 MSVDCDIIREI 492
             +  D + E+
Sbjct: 438 GDLFIDTVAEL 448


>gi|49486023|ref|YP_043244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208175|ref|ZP_06924605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|60390422|sp|Q6GA29|MURD_STAAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49244466|emb|CAG42894.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296886914|gb|EFH25817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|329728830|gb|EGG65251.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 449

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    I 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFII- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +    A +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMENVRAMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   K            IE  N  +A+    +++   DV+++
Sbjct: 374 VF-------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|116491263|ref|YP_810807.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1]
 gi|122276555|sp|Q04EI0|MURC_OENOB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116091988|gb|ABJ57142.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1]
          Length = 435

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 108/361 (29%), Gaps = 44/361 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G  GK+S  S +  I      +S+ IG       F+    +               
Sbjct: 104 IAVSGAHGKTSTTSLLAHILSNFESTSYLIGDGVGKGVFSSKYFVVEADEYDRH------ 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+++     +A     + +
Sbjct: 158 ---------------------FQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +     Y +D      +K+      R+LS G++   +     +         ++S  
Sbjct: 197 ---KKIIFAYGEDPE----IKKIKPKTARILSYGFEKSDYFCANNIDKRTEGSYFSLSKG 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   DF   + G+  + +   A  +   +G     + + L        RF         
Sbjct: 250 GRKLGDFFATIEGDHGILDTTAAIAVADYLGFSVDQIQKGLLTYQGAKRRFNISQVADL- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  +   R    + R++ VF                 AL  AD   
Sbjct: 309 -TIVDDYAHHPTEIKATIDAARQKFPNKRLVAVFQPHTYTRVNAFKDEYVNALKSADKVY 367

Query: 415 VTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ET 471
           +T    + R +       +I+  +P      +   A            VLV  G G  E 
Sbjct: 368 ITPIFGSLREKAGNAKSEDILDKLPNAGAIISESNAYDKL--SAEHGSVLVFMGAGDIEK 425

Query: 472 V 472
            
Sbjct: 426 Y 426


>gi|333027791|ref|ZP_08455855.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
 gi|332747643|gb|EGJ78084.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
          Length = 454

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 147/414 (35%), Gaps = 57/414 (13%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G E +V +  +      F+A   +  P+    +        A RL G      LAVTGT+
Sbjct: 50  GTELVVTAPGWQPGKPLFAAAEAAGVPVW--GDV-----ELAWRLRGPDAAPWLAVTGTN 102

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +G  +  +G                     ++   + L+ +    
Sbjct: 103 GKTTTVRMLAAILEAAGHRTAAVGNIG------------------VSLLDAVLAEEPYDV 144

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H +  AY   K R++E     +   
Sbjct: 145 LAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMAAYAADKGRVYEG---NQVAC 199

Query: 245 IIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-----SVEGK 298
           +  + D  ++E+++ A    GCR +             V   +   +  +       +  
Sbjct: 200 VYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGVVEGYLVDRAFVPDRAQQAQEL 259

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   P    V NAL AA L  A G+ +  V E L      P R E V T      +
Sbjct: 260 AEVADVDPPAPHNVANALAAAALARAFGVPATAVREGLRAFRPDPHRIEHVATIDGVSYV 319

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               A  +++ E  L            +V+  GG         + + A       ++   
Sbjct: 320 DDSKATNTHAAEASLAAYEP-------IVWIAGGLAKGASFDELVQGAAKRLRAVVLM-- 370

Query: 419 NPRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVA 465
                D   IR  +    P   +   +R       EA+R A  +    D +++A
Sbjct: 371 ---GRDRALIREALARHAPNVPVVDLDRADTGAMSEAVREAAGLAESGDTVLLA 421


>gi|282918881|ref|ZP_06326616.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
 gi|282316691|gb|EFB47065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
          Length = 449

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    + 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +    A +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMENVRAMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   K            IE  N  +A+    +++   DV+++
Sbjct: 374 VF-------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|194335053|ref|YP_002016913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312871|gb|ACF47266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
          Length = 469

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 90/491 (18%), Positives = 166/491 (33%), Gaps = 83/491 (16%)

Query: 47  VAIVGNKEDGHLFIPQAI---AQGAEAIVVSS----------------AYSLQDFSATIR 87
           V+++G +  G   I  A+    QGA   V                          +  + 
Sbjct: 13  VSVIGARRSG---IAAALLMREQGASVFVSERGALVPGDRELLAEKGIDAEQGGHTGRVY 69

Query: 88  SNTPILV---VDNTRKFLSLFASRLYGKH----------PENILAVTGTSGKSSVASFVQ 134
                +V   V  T   +    +R    +          P  I+AVTGT GK++ A+ + 
Sbjct: 70  DADFCIVSPGVPLTAPVMQFLRARDIAVYSEIEAASWFCPARIIAVTGTDGKTTTATLIA 129

Query: 135 QICQ----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            IC      +G   F +G      S                      S        VE S
Sbjct: 130 AICADHALAAGYRVFSVGNIGVPFSSMVG------------------SMASGDIAVVEVS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+ L+       +      TN+  DH+D +  + + Y  AK R+F     ++   I+ AD
Sbjct: 172 SYQLE--GCTWFRPDIALMTNITPDHLDRYDGSMRLYAEAKYRIFSRQ-RQDDTLIVNAD 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG--------KDF 300
           D   ++  +       ++ + G   G+        A+     +T+   G         + 
Sbjct: 229 DPILRQRFEERLGVVPQLAAFGLDAGRTRAFAASGAVTEGGWITLFKSGSLDERVIAHED 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                  G   + NAL AA    A G+  + +   L+    V  R E+V        I  
Sbjct: 289 LLKRGFMGRHNLSNALAAALAADAAGVPLSSIKRALKAFGGVEHRQEYVCEIDGVICIND 348

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   N++   L+ +        +V+   G D+D   R +   +A  +  +  +     
Sbjct: 349 SKATNLNAMRQALEAVS-----GPVVLIAGGRDKDGDYRELRDLVASKVEMLVAL----- 398

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             E  ++        +P  +  G+  EA+R  ++   +   L+ +  G  +  +  N E 
Sbjct: 399 -GEAADRFTGAYGESVPA-VTAGSLREAVRLGLQHARRGSTLLFS-PGCSSFDMFDNFEH 455

Query: 481 KMSVDCDIIRE 491
           + ++   I+RE
Sbjct: 456 RGAMFKSILRE 466


>gi|317050622|ref|YP_004111738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
 gi|316945706|gb|ADU65182.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
          Length = 439

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 144/387 (37%), Gaps = 43/387 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            Y ++   I+AVTGT+GKS+V + +  I Q+SG+S+   G                    
Sbjct: 93  FYQEYEGAIIAVTGTNGKSTVTALIAHILQQSGISAVAAGNIGL---------------- 136

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               AL  L+  G     +E SS  L+   +   +       N+  DH++ + T + Y +
Sbjct: 137 ---PALDTLAL-GCQVTVLELSSFQLE--TIQTFRPDIAVLLNVTEDHLNRYDTFEHYVD 190

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F     ++   ++  DD   + +    H    RV    +  +   +         
Sbjct: 191 AKERIFLNQTAED-WCVLNHDDPVIRTLTSDNHIPARRVF---FSSRSRQMVDNFLNCTV 246

Query: 289 QQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           Q V   V G+  +       L G   + N   A       G+    +   LE    +P R
Sbjct: 247 QGVRGKVNGQLLEAPADRLCLEGLHNMENVAAALAAVRLYGLSPEQIGTGLEGFAPLPHR 306

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              V      G  Y+D +  +N    I   ++++   + I++   G ++      + G +
Sbjct: 307 MTLV--REIVGVRYIDDSKATN----IGAVLKSLEGQKNIILIAGGRNKGGDFAQLAGAV 360

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                 I  +       E   +I   +   +   +   +  +A+  A +     D ++++
Sbjct: 361 KASCKLILAI------GEARHQIAGALGKSV-SVLLADDMADAVSQAWKQAVSGDTVLLS 413

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
             G  +  + T+ E + +V    ++++
Sbjct: 414 -PGCASFDMFTSFEHRGAVFEQAVQQL 439


>gi|224476830|ref|YP_002634436.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254766022|sp|B9DN57|MURC_STACT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222421437|emb|CAL28251.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 437

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 80/359 (22%), Positives = 122/359 (33%), Gaps = 50/359 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     Q       +  Y    LSY 
Sbjct: 104 IAVTGAHGKTSTTGLLSHVMNGDKRTSFLIG-DGTGLGIPQSEFFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY +      NA    F+E+
Sbjct: 162 -------------------------HPDYAIMTNIDFDHPDYFKDVDDVTNA----FQEM 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
                  I+    A+ K+   R   A   +   G +  + I+   +    +  Q  + ++
Sbjct: 193 AYNVKKGIV----AWGKDEHLRKIKADVPIYYYGLEKNEDIYADNIQITEHGTQFDVYID 248

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK FD FL P  G+  + N L    +C   G+D   + E LE    V  RF    T    
Sbjct: 249 GKYFDQFLSPQYGDHNILNTLAVIMVCHLEGLDIENIKEALETFGGVKRRFN--ETKLHN 306

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R    +  +I VF                 +L  AD   
Sbjct: 307 QVLVDDYAHHPREINATIETARKKYPNKEVIAVFQPHTFSRTKAFLEEFAESLSKADRVF 366

Query: 415 VTDDNP--RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
           + D     R  D      ++I  IPG    G         + +LN+ D  V++  G G 
Sbjct: 367 LCDIFGSIREHDGSLTIQDLIDRIPGAQLIGENN------VNILNEFDNAVILFMGAGD 419


>gi|254463263|ref|ZP_05076679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2083]
 gi|206679852|gb|EDZ44339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 466

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 132/380 (34%), Gaps = 42/380 (11%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + V ++   F   FA+  +        ++AVTG++GKS+ ++ +  + + +   +   G 
Sbjct: 94  VPVDNDISLFFRSFATSEWDNLDVTPRVVAVTGSNGKSTTSALIHHVLEHANRPTQLAGN 153

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                                   L    +     V +E SS+  D  R   +      F
Sbjct: 154 IG-------------------RGVLDIDPAIDGEVVVLELSSYQTDLAR--ALTPDVAVF 192

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL  DH+D HQ    YF AK RLF E  P+ +   I  D+               RV+ 
Sbjct: 193 TNLSPDHLDRHQGMGGYFAAKRRLFAEGGPERAIIGIDEDEGLYLAGQMAEGPQDDRVIR 252

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTIS----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +  + K          +            +   D   +  LPG     NA  A  +C  +
Sbjct: 253 ISVERKLTDFGWAVFANKGFLSEYRKGRQIGSIDLRAIKGLPGAHNHQNACCAYAVCRTL 312

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+   ++         +P R + V        +    A   +S    L   + I      
Sbjct: 313 GLAPRVIEAGFASYPGLPHRSQIVADVDGVTYVNDSKATNVDSAAKALGAFKKIR----- 367

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
             + CGG   +G    +   A ++    ++  +  R        A  + G+   +   + 
Sbjct: 368 --WICGGLEKEGGVEALANAADEVLKAYVIGREASRF-------AMQLAGVKTEVC-TSM 417

Query: 446 IEAIRTAIEMLNKQDVLVVA 465
            EA+  A+E  ++ + +++A
Sbjct: 418 EEAVARAMEDSSEGETVLLA 437


>gi|156973107|ref|YP_001444014.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524701|gb|ABU69787.1| hypothetical protein VIBHAR_00786 [Vibrio harveyi ATCC BAA-1116]
          Length = 452

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 123/359 (34%), Gaps = 27/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D   ++V++R           G  G +   K V       +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQSLQDVIER--GCWTEKQFSGVDGDWQAHKLVVD---GSKFE 260

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +S++G+    + + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VSLQGEKVGIVDWVLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--L 409
             +G  +Y D+AH   ++E+ L  +R     + I+           +      +A     
Sbjct: 321 E-QGVTVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVNKNTLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      ++I  +     P F++       +   +E     D ++V   G
Sbjct: 380 ADEVFLFQPDSIDWSVQEIADQCKQ--PAFVDAEMDSF-VAKIVERAQPGDQILVMSNG 435


>gi|184156588|ref|YP_001844927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ACICU]
 gi|332874928|ref|ZP_08442779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
 gi|226711877|sp|B2I1V6|MURD_ACIBC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|183208182|gb|ACC55580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ACICU]
 gi|322506475|gb|ADX01929.1| murD [Acinetobacter baumannii 1656-2]
 gi|323516354|gb|ADX90735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332736871|gb|EGJ67847.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
          Length = 448

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 127/354 (35%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 106 PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 146

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 147 LLKDQP-ELLVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQ 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
                    +   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 204 G----AKKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDADGTLWLARG 255

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R E+V T  R
Sbjct: 256 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKRFKGLEHRCEYVKT-VR 314

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 315 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFSPLRSSIEKYAK 373

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+         +DV+++
Sbjct: 374 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|253731802|ref|ZP_04865967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724452|gb|EES93181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 449

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    I 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFII- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +    A +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMENVRAMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   K            IE  N  +A+    +++   DV+++
Sbjct: 374 VF-------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|39993|emb|CAA45555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|383709|prf||1904153A murD gene
          Length = 369

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 126/352 (35%), Gaps = 41/352 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++  + + ++ +     +   G   T++S   +         ++   
Sbjct: 30  SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVAS---EVAYHADGDEWIVTE 86

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS     G                     +       N+   H+DYH T++ Y  AK ++
Sbjct: 87  LSSFQLMGTHAF-----------------RPEISLILNVFDAHLDYHHTRENYEKAKQKV 129

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +      +  AI+  DD     + + A  A     SV    +     K   I    +  +
Sbjct: 130 YLHQTASDK-AIVNQDDETVVRLAE-AGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAIL 187

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +E         LPG   + N L A  +    G  +  V + L     V  R ++V T  
Sbjct: 188 PLE------EVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTT-V 240

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADI 412
            G + Y D   T+     IL   + +++    V+    G DR  G   +   +    A +
Sbjct: 241 NGRKFYNDSKATN-----ILATSKRLSAFDKPVILLAGGLDRGNGFDDLKPYMKHVKA-V 294

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 295 LTFGQTAPKLE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 341


>gi|227327090|ref|ZP_03831114.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 486

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 146/422 (34%), Gaps = 53/422 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA +  +       +  I V+    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVIRRA-EMLAELMRFRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLF 304
            DDA  +E++ R       + + G+      ++         Q   ++E KD        
Sbjct: 231 IDDAVIRELLPRVGR---HITTYGFS-DDADVRISGYHQTGAQGHFTLERKDKPLLTVTL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR- 357
             PG     NA  A  +    GID   +L  LE+      RF+F+G       N + G  
Sbjct: 287 NAPGRHNALNAAAAVAVATDEGIDDDAILRALERFQGTGRRFDFLGEYPLELVNGQSGTA 346

Query: 358 -IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DY H    ++  +K  R    + R++++F                  L   D+ ++
Sbjct: 347 MLVDDYGHHPTEVDATIKAARAGWPNKRLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLM 406

Query: 416 TDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQ-DVLVVAGK 467
            D     E P        +   I   G    I   + ++ +   +    +  D+++V G 
Sbjct: 407 LDVYSAGESPIPGADSRSLCRTIRGRGKIDPILVTD-VDTLPELLSQALRGEDLILVQGA 465

Query: 468 GH 469
           G+
Sbjct: 466 GN 467


>gi|261367771|ref|ZP_05980654.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
 gi|282570568|gb|EFB76103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
          Length = 465

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 143/452 (31%), Gaps = 68/452 (15%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV----------- 95
           VA +G        I Q +  GA+  +     S+++F          L V           
Sbjct: 16  VAFIGAGVSHKRCIEQFVELGAKVTLCDQKKSVEEF-GNYAETLRRLQVNLSLGEHYTDG 74

Query: 96  -----------------DNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASF 132
                               +  L   A         +   P  I+AVTG+ GK++  + 
Sbjct: 75  FAGQDIIMRTPGYEYYKPELQAALKAGAMVTSEVELFFEFCPCEIIAVTGSDGKTTTTTL 134

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + ++ + +G   F  G                     L   L+ ++ + V    VE SS 
Sbjct: 135 ISKMMEAAGRKVFLGGNIG----------------AALLPQLADVTPEAVAV--VELSSF 176

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L   R           TN+  +H+D+H+  Q Y +AK  +    +P     + Y ++  
Sbjct: 177 QLISMRRS---PKVAVVTNVTPNHLDHHKDMQEYIDAKRNILLWQVPPCRAVLGY-ENEI 232

Query: 253 SKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           S+ +    +        L     G F+  +     + +      V  +       L G  
Sbjct: 233 SRSMQSDCKGEQVWFTRLHETDNGAFLRAEDDTLCYAENGTVTPVVARS---EVKLRGLH 289

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L A        +    + +       V  R E V T   G   Y D   +  S  
Sbjct: 290 NVENLLAAIAAVWGR-VPVEAMRQVASTFTGVEHRIEPVRT-LDGVTYYNDSIAS--SPT 345

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  +R+      I++   G D+     P+  +I   +  + ++    PR E   +   
Sbjct: 346 RTIAGLRSFDQK--IILIAGGYDKKIPYEPLAPEILAHVKTLVLMGATAPRIEKAVREHP 403

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +  +     +   N  +A+  A       DV+
Sbjct: 404 DFPNSDLKIVHADNMQDAVEKARAAAVPGDVV 435


>gi|295693402|ref|YP_003602012.1| UDP-N-acetylmuramate--l-alanine ligase [Lactobacillus crispatus
           ST1]
 gi|295031508|emb|CBL50987.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           ST1]
          Length = 437

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 113/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +S+ IG                             
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGRGKG---------------------VA 148

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +S+   + + E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 149 NSRFFVYEADEYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G+         ++       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFNDTDDFQATQIKKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  + N+     +     +    + + L        RF     +   
Sbjct: 255 GKDLGEFEIHLFGDHSILNSTAVVAVAYTEKVPMEDIKKGLPSFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      + I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTK-----NKNSVIVFMGAGD 425


>gi|148828299|ref|YP_001293052.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
 gi|166224694|sp|A5UIR3|MURC_HAEIG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148719541|gb|ABR00669.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
          Length = 475

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 127/375 (33%), Gaps = 39/375 (10%)

Query: 59  FIPQAIA--QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA      +  A+ +   P++      +   + A  +  +H 
Sbjct: 67  YIGHAAEHIKGASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRHG 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I  ++ L    +      S+          +  YL   +
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL---I 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D ++       A    F
Sbjct: 172 AEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +             Q  +                  
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVFC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G    
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIR 335

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +   R+  DY H    +++ +K  R      RI+++F                  L L 
Sbjct: 336 PNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSLV 395

Query: 411 DIAIVTDDNPRSEDP 425
           D  I+ D     E P
Sbjct: 396 DALIMLDVYAAGEAP 410


>gi|332663135|ref|YP_004445923.1| UDP-N-acetylmuramate--L-alanine ligase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331949|gb|AEE49050.1| UDP-N-acetylmuramate--L-alanine ligase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 456

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 133/416 (31%), Gaps = 53/416 (12%)

Query: 64  IAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           I  G + +V + A      ++   +   TPI       + L + +  +        +A+ 
Sbjct: 64  IPAGVDLVVYTPAVPTSHAEYQYFLTQGTPI---KKRAEVLGIISRGM------KTVAIA 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++ +S    + + +G+           ++F         S   L  +   +    
Sbjct: 115 GTHGKTTTSSLTAHLLRSTGVDC---------TAFLGGIARNFESNYVLGSSEWVVVEAD 165

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
               S               +     S  ++  DH+D +   +   N   + F + +   
Sbjct: 166 EFDRSFLH------------LHPDIASIMSMDADHLDIYGDAETLLNTGFKAFAKQIKPG 213

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDF 300
                     + +  +    +A     S G +G       +           +S E +  
Sbjct: 214 GTL-------WLQHNLTTHFDATTAYRSFGVEGGDYQAHNIRVEKGYFVFDYLSPEREIK 266

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG   + NA VA  + + +G     + + LE    V  RFE +  +      + 
Sbjct: 267 GLRMPLPGRHNIENATVAMSIALQLGASDEALRDGLEAFRGVKRRFEIIHRDEE-VAFFD 325

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH    L   +   R +     I  VF                 ALD  D   + D  
Sbjct: 326 DYAHHPTELNAAIGAARELFPAARITGVFQPHLYSRTRDFAEGFAEALDGLDEIYLLDIY 385

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P  E P      E +   + +     I K   + A++      NK +VL+  G G 
Sbjct: 386 PARELPIPGVSSEMLVKLMRNPNVHLITKAELLPALQK-----NKPEVLLTLGAGD 436


>gi|167550676|ref|ZP_02344433.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168464319|ref|ZP_02698222.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632677|gb|EDX51131.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205324415|gb|EDZ12254.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 491

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 145/434 (33%), Gaps = 61/434 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+ +   + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  +       PG     NA  A  +    GID   +L  LE       RF+F+G   
Sbjct: 276 RQGMPNLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R       ++++F                
Sbjct: 336 LEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK- 458
             L   D  ++ D  P  E P  I       +   I    +I+ I          ML   
Sbjct: 396 NVLTQVDALLMLDVYPAGEAP--IPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPV 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LTGNDLILVQGAGN 467


>gi|290890810|ref|ZP_06553877.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429]
 gi|290479582|gb|EFD88239.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429]
          Length = 435

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 109/361 (30%), Gaps = 44/361 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G  GK+S  S +  I      +S+ IG       F+    +               
Sbjct: 104 IAVSGAHGKTSTTSLLAHILSNFESTSYLIGDGVGKGVFSSKYFVVEADEYDRH------ 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+++     +A     + +
Sbjct: 158 ---------------------FQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +     Y +D      +K+      R+LS G++   +     +         ++S  
Sbjct: 197 ---KKIIFAYGEDPE----IKKIKPKTARILSYGFEKSDYFCANNIDKRTEGSYFSLSKG 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   DF   + G+  + +   A  +   +G     + + L        RF         
Sbjct: 250 GRKLGDFFATIEGDHGILDTTAAIAVADYLGFSVDQIQKGLLTYQGAKRRFNISQVADL- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  +   R    + R++ VF                 AL+ AD   
Sbjct: 309 -TIVDDYAHHPTEIKATIDAARQKFPNKRLVAVFQPHTYTRVNAFKDEYVNALESADKVY 367

Query: 415 VTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ET 471
           +T    + R +       +I+  +P      +   A            VLV  G G  E 
Sbjct: 368 ITPIFGSLREKAGNAKSEDILDKLPNAGAIISESNAYDKL--SAEHGSVLVFMGAGDIEK 425

Query: 472 V 472
            
Sbjct: 426 Y 426


>gi|333029406|ref|ZP_08457467.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides coprosuis DSM
           18011]
 gi|332740003|gb|EGJ70485.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides coprosuis DSM
           18011]
          Length = 457

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 126/370 (34%), Gaps = 51/370 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++ +  +   S      IG T+ +   +++              
Sbjct: 111 SSRGLCVAGTHGKTTTSTLIAHLLHES-----SIGCTAFLGGISENYNT----------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L S+   +  +EA       H    +       T+   DH+D + TQ+AYF +    
Sbjct: 155 -NLLLSKKSPYTVIEADEFDRSFH---ALHPFISVITSTDPDHLDIYGTQEAYFES-FEH 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +  L+  +   +I         + +     G +  +        H + +   + +  +  
Sbjct: 210 YTSLIDSDGILVIRKGLKIHPRLKE-----GVKTYTYSAHEGDFHAENIIIENGEIFMDF 264

Query: 294 SVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                  +     +P    + N++ A  +          + + +     V  RF+FV  N
Sbjct: 265 VGPNVRINNIQLGVPISINIENSVAALAVAHLCAAKDQELKKAMGTFKGVERRFDFVLKN 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLAD 411
            +   +  DYAH    ++  + +I+ +   R +  VF                 +L L+D
Sbjct: 325 DKH-VLINDYAHHPAEIKQSIISIKELYPKRKLTTVFQPHLYTRTKDFYKDFAESLSLSD 383

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQ----------- 459
             I+ D  P  E+P       I G+   +   N R   I+       K+           
Sbjct: 384 EVILLDIYPAREEP-------IEGVTSMLIYSNLRNSVIKH---TATKENIVNLLSTLST 433

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 434 DIVLTLGAGD 443


>gi|168262186|ref|ZP_02684159.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348903|gb|EDZ35534.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 491

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 145/434 (33%), Gaps = 61/434 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+ +   + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  +       PG     NA  A  +    GID   +L  LE       RF+F+G   
Sbjct: 276 RQGMPNLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R       ++++F                
Sbjct: 336 LEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK- 458
             L   D  ++ D  P  E P  I       +   I    +I+ I          ML   
Sbjct: 396 NVLTQVDALLMLDVYPAGEAP--IPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPV 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LTGNDLILVQGAGN 467


>gi|307611494|emb|CBX01167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 130b]
          Length = 447

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 139/385 (36%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           S  +  +TP+L  +  R+  +        L  +    ++A+TGT+GKS+V + V ++ + 
Sbjct: 72  SPGLALDTPVL--ERARQAGASIYGDIECLAREISAPVIAITGTNGKSTVTTLVGEMAKA 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G      G   T      D+                          +E SS  LD    
Sbjct: 130 AGFRVAVAGNIGTPVLDMLDDEHHY------------------DLWVLELSSFQLDL--T 169

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +  +  +  N+  DH+D H T +AY  AK R++          +   +D Y+  V  +
Sbjct: 170 YSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYRG----AKAVLFNREDVYT--VPHQ 223

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +  A  + +S G     +    +    N   +   +E         + G     NAL A 
Sbjct: 224 SCQADIKCISFGKDAPSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAAC 283

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A GI    +L  L+    +P R ++V      G I         +    +  I   
Sbjct: 284 ALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVGWINDSKGTNIGATISAINGIGGS 343

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G  IV+   G  +    + +   ++  +  I ++       ED +KI + +   +P  
Sbjct: 344 MQG-KIVLIAGGQGKGADFQELAQPVSEFVRSIVLI------GEDADKIESALAKVVP-V 395

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +   A+  A       DV+++
Sbjct: 396 VRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|241762283|ref|ZP_04760364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373186|gb|EER62816.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 441

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/401 (18%), Positives = 134/401 (33%), Gaps = 63/401 (15%)

Query: 67  GAEAIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123
           G  A VVS    + +   A +     I ++ +   F    A   + +H     ++ +TGT
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIGDIELFAQ--AHGFWERHGRRCPVVGITGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +  I + +GL +   G                         L+        
Sbjct: 131 NGKSTTTALIHHILKEAGLPTLMGGNIGL-------------------PLLAADPLPDGG 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +       TN+  DH+D H   + Y  AK RLF  L      
Sbjct: 172 VYVLELSSYQIDLTFT--LDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFL-LQSSPHY 228

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I  DD  S+ + K++      V +     +                            
Sbjct: 229 AVIATDDIPSQVIAKQSAAHLVTVHADNISAEDQ-----------------------INW 265

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA++A  +   +GI   ++ + L     +P R + +G     G +++D +
Sbjct: 266 PNLQGPHNAQNAVLAMAVAHILGISDDVISKALVSYAGLPHRMQKIGERR--GVLFIDDS 323

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +N   M              ++ G     D          A         T       
Sbjct: 324 KATN--AMATAPALAAFPAIHWILGGVPKTADLDP-----CKAFYNHIRQAYT-IGQAGP 375

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  ++  E   G+   +E G   +A+R A E     +V+++
Sbjct: 376 DYAQLLRE--AGV-NVVECGTLEKAVRLAAEEAQPDEVVML 413


>gi|148242946|ref|YP_001228103.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RCC307]
 gi|147851256|emb|CAK28750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RCC307]
          Length = 458

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 125/391 (31%), Gaps = 47/391 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+S   +          +    VV          A           + +TGT+GK++V 
Sbjct: 74  VVISPGIAFDHPVLNQLRDRGCRVVGEVEVAWQAMAG-------IPWIGITGTNGKTTVT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  + Q+ GL +   G     ++                  L+    +G     V   
Sbjct: 127 SLVAHLLQQGGLDAPACGNIGASAA-----------------ELALACLEGEKPERVVVE 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      ++   G +T L  DH+D H T + Y + K      LL +     + ADD
Sbjct: 170 LSSYQIEAAPSVQPSIGVWTTLTPDHLDRHGTLERYRSIKA----GLLQQSGRQFLNADD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGE 309
              +++   A      +   G             +        +  G  F      +PG 
Sbjct: 226 ---RDLFAHAAEWPQALWVSGRDKDQFSAAITPHLWVSGGQLCNQTGPLFPCAALAMPGA 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N  +A  + +  G+  A +         VP R E +      G  Y + +  +N  
Sbjct: 283 HNRQNLALATAVALECGLSPAQIEAGCRSFPGVPHRLERI--RELSGITYFNDSKATN-Y 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  L  ++++     +VV   G  +       +  +    A + +         + +   
Sbjct: 340 DASLVALQSLERP--LVVLAGGRAKRGEPGAWLEALGQKAAAVVLFG-------EAQSTF 390

Query: 430 AEII--HGIPGFIE-KGNRIEAIRTAIEMLN 457
            E++   G PG IE + +  +A+  A  +  
Sbjct: 391 RELLGSAGYPGVIEQQEHLDQALPLARRLAE 421


>gi|306832975|ref|ZP_07466107.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
 gi|304424874|gb|EFM28008.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
          Length = 452

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 141/429 (32%), Gaps = 62/429 (14%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G   D +      + +G + I  S    L D +  +    P +  DN      + A  + 
Sbjct: 41  GKTFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNP-----MVARAIE 95

Query: 111 GKHP-------------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
              P               I+ +TG++GK++  + + +     G S    G    I   A
Sbjct: 96  KNIPVITEVELAYMISAAPIIGITGSNGKTTTTTMIAETLNNGGKSGLLSG---NIGFPA 152

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +   T      L   LS     G                  D         TNL   HI
Sbjct: 153 SEVAQTATDKDILVMELSSFQLMG-----------------TDTFHPHIAIITNLMPTHI 195

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  + + +   +   + +  D   +   K A        +    G ++
Sbjct: 196 DYHGTFEEYVAAKWNIQKNMTADDFVVLNFNQDLAKELAQKTAAQVVPFSTTKKVDGAYL 255

Query: 278 HLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                         T+  +G+         +PG   V NAL    +    GI +  + E 
Sbjct: 256 DGD-----------TLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIANDAIKET 304

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     V  R + +G    G + Y D   T+  +    K +        +++   G DR 
Sbjct: 305 LTHFGGVKHRLQALG-EINGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRG 360

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                ++  I      I I+ +  PR +     RA     +P +++  +  +A R A + 
Sbjct: 361 NEFDELVPDITGVKL-IVILGESAPRVK-----RAADKANVP-YVDAKDVADAARIAYDK 413

Query: 456 LNKQDVLVV 464
               DV+++
Sbjct: 414 AEAGDVVLL 422


>gi|239502056|ref|ZP_04661366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB900]
          Length = 448

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 126/354 (35%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 106 PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 146

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 147 LLKDQP-ELLVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQ 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
                    +   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 204 G----AKKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDADGTLWLARG 255

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R E+V T   
Sbjct: 256 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKT-VH 314

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 315 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFSPLRSSIEKYAK 373

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+         +DV+++
Sbjct: 374 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|56412401|ref|YP_149476.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361337|ref|YP_002140972.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|59798120|sp|Q5PDC7|MURC_SALPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620429|sp|B5BLC3|MURC_SALPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56126658|gb|AAV76164.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092812|emb|CAR58238.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 491

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 138/411 (33%), Gaps = 57/411 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +  A   +  P++     R+   + A  +  +H    +A+ GT GK++  + V  I   
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIYAE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +GL    +      ++        +         ++       + +              
Sbjct: 144 AGLDPTFVNGGLVKAAGVHARLGHS------RYLIAEADESDASFL-------------- 183

Query: 200 DGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             ++ +    TN+  DH+D YH   +         F   LP    A++  DD   +E++ 
Sbjct: 184 -HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVMCVDDPVIRELLP 241

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNAL 316
           R      +  + G+ +   + ++    I  +   T+  +G  D       PG     NA 
Sbjct: 242 RVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IYVDYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    
Sbjct: 299 AAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++  +K  R       ++++F                  L   D  ++ D  P  E P  
Sbjct: 359 VDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAP-- 416

Query: 428 IRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
           I       +   I    +I+ I          ML       D+++V G G+
Sbjct: 417 IPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGN 467


>gi|303251841|ref|ZP_07338012.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249142|ref|ZP_07531149.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302649271|gb|EFL79456.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854430|gb|EFM86626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 475

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 156/445 (35%), Gaps = 56/445 (12%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R  +AG  +F+        GH    + +A GA  +V SSA    +          I V+ 
Sbjct: 58  RLAEAGAKVFI--------GHQ--AENVA-GASVVVASSAIDDSNPEVRAAKEARIPVI- 105

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              +   + A  +  +H    +AV GT GK++  + +  I   + L    +      S+ 
Sbjct: 106 ---QRAQMLAEIMRFRHG---IAVAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSAG 159

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                    +  YL   ++       + +                ++ +    TN+  DH
Sbjct: 160 ---KNAHLGASRYL---IAEADESDASFL---------------HLQPMVSVVTNIEPDH 198

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +D +        A    F   LP    A++ ADD     V++ A   G +VL+ G+  K 
Sbjct: 199 MDTYGGDFEQMRATYVKFLRNLPFYGLAVMCADDET---VIEIAPQVGRQVLTYGFSEKA 255

Query: 277 IHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +  +             +   G+  D L  +PG+    NA  A  +    GI +  +L 
Sbjct: 256 DYRIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNALNATAALAVAKEEGIANEAILA 315

Query: 335 HLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            L        RF+ +G+    +    +  DY H    +++ +K  R+   + R++++F  
Sbjct: 316 ALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARSGWENKRVVMIFQP 375

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKG 443
                           L   D  I+ +     E P      + +   I + G    I   
Sbjct: 376 HRYSRTRDLFDDFVQVLSQVDALIMLEVYAAGEAPIVGADSKALCRSIRNLGKVDPILVS 435

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  +      +++   D+++  G G
Sbjct: 436 DTDQLGEVLDQIIQDGDLILAQGAG 460


>gi|319957189|ref|YP_004168452.1| mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419593|gb|ADV46703.1| Mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 472

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 126/370 (34%), Gaps = 50/370 (13%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+ +    S         ++ VT + GK+S+ +F+  +  +   +       +T+    +
Sbjct: 143 RRAMKRLKSL----PDLKVVGVTASYGKTSIKNFIATLLAQRYRTYATPRSVNTLGGVMK 198

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D     P                V  V + A   G        ++        +G  HI+
Sbjct: 199 DVNEELPE------------EAEVYVVEMGARGEGDIAEITRFVQPHYAVVGKIGPAHIE 246

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y +T +   N KM + +              +A+  E  +        +           
Sbjct: 247 YFKTLERIRNTKMEILQ---------SPRLIEAWVHESARIKPTEMIHIFG-------PE 290

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +++V A       T+  EG+ +       G F   N   A  +  A+G+    +   LEK
Sbjct: 291 IEEVEATLEGTCFTL--EGERYCAKIL--GAFNAVNLAAAIHVARALGLTPDEIRAGLEK 346

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           +  VP R + +     GG++ +D +   N   +        T   GR +++     + D+
Sbjct: 347 IEPVPHRLQRIDA---GGKVILDDSFNGNIDGMMASFDLAATW-PGRKVLITPGLVEADE 402

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEM 455
                + + A ++ D  IVT D         I  EI+   P  +    R   +    +E 
Sbjct: 403 ALNRQVAERAEEIFDRIIVTGDLNY-----AIFKEIVS--PEKLRHLERKSEMEQMLVEE 455

Query: 456 LNKQDVLVVA 465
               D+++ A
Sbjct: 456 TRPGDLILFA 465


>gi|189462924|ref|ZP_03011709.1| hypothetical protein BACCOP_03625 [Bacteroides coprocola DSM 17136]
 gi|189430351|gb|EDU99335.1| hypothetical protein BACCOP_03625 [Bacteroides coprocola DSM 17136]
          Length = 458

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 124/377 (32%), Gaps = 50/377 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E  L V GT GK++ ++    +   S      +G  + +   +++               
Sbjct: 112 EKGLCVAGTHGKTTTSTMTAYLLDHS-----HVGCNAFLGGISKNYHT------------ 154

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L S     V +EA       H L      A   T    DH+D + T +AY  +  +  
Sbjct: 155 NLLLSDKSDFVVIEADEFDRSFHWL---TPYATVITATDSDHLDIYGTHEAYVESFQKYT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             + P+    I    D      +  A   G  V +   +    H + +   + +      
Sbjct: 212 SLIQPEGYLIIKKGID------LNPAVQPGVTVYTYSTEEGDFHAENIRIENGEIYFDFI 265

Query: 295 VE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G        +P    + N + A  L    G  +  + + +     V  RF+F   N 
Sbjct: 266 SPLGNIKGIQLGVPVYVNIENGIAAMALAQIGGATNEEIKQAMPGFRGVDRRFDFKLKND 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
           R      DYAH    ++  + ++R +   + I  VF                 +L L D 
Sbjct: 326 R-IVFISDYAHHPAEIKQSISSVRMLYPDKKITAVFQPHLYTRTRDFYKDFADSLSLLDE 384

Query: 413 AIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            I+ D  P  E P          + +R +I   +     K N +E I+       K DVL
Sbjct: 385 VILLDIYPARELPIEGITSKLIYDNLRPDIEKSMCS---KENLLEVIKH-----KKTDVL 436

Query: 463 VVAGKGH-ETV--HIVT 476
           +  G G  E     I  
Sbjct: 437 ITLGAGDIENYVPQIYE 453


>gi|118586734|ref|ZP_01544171.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163]
 gi|118432822|gb|EAV39551.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163]
          Length = 435

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 108/361 (29%), Gaps = 44/361 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+G  GK+S  S +  I      +S+ IG       F+    +               
Sbjct: 104 IAVSGAHGKTSTTSLLAHILSNFESTSYLIGDGVGKGVFSSKYFVVEADEYDRH------ 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+++     +A     + +
Sbjct: 158 ---------------------FQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +     Y +D      +K+      R+LS G++   +     +         ++S  
Sbjct: 197 ---KKIIFAYGEDPE----IKKIKPKTARILSYGFEKSDYFCANNIDKRTEGSYFSLSKG 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   DF   + G+  + +   A  +   +G     + + L        RF         
Sbjct: 250 GRKLGDFFATIEGDHGILDTTAAIAVADYLGFSVDQIQKGLLTYQGAKRRFNISQVADL- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  +   R    + R++ VF                 AL  AD   
Sbjct: 309 -TIVDDYAHHPTEIKATIDAARQKFPNKRLVAVFQPHTYTRVNAFKDEYVDALKSADKVY 367

Query: 415 VTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ET 471
           +T    + R +       +I+  +P      +   A            VLV  G G  E 
Sbjct: 368 ITPIFGSLREKAGNAKSEDILDKLPNAGAIISESNAYDKL--SAEHGSVLVFMGAGDIEK 425

Query: 472 V 472
            
Sbjct: 426 Y 426


>gi|121727433|ref|ZP_01680561.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|147675374|ref|YP_001218037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|262167568|ref|ZP_06035273.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
 gi|121630205|gb|EAX62605.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|146317257|gb|ABQ21796.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|227014431|gb|ACP10641.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae O395]
 gi|262024021|gb|EEY42717.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
          Length = 451

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 115/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLFKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVSPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|307564692|ref|ZP_07627222.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
 gi|307346620|gb|EFN91927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
          Length = 443

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 123/351 (35%), Gaps = 37/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G   + +G    I                     
Sbjct: 102 SKMICITGSNGKTTTTSLIFHIFKDAG---YDVGLAGNIG----------------KSLA 142

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             ++     +  +E SS  LD   +   +       N+  DH+D ++   + Y NAKMR+
Sbjct: 143 LQVAESPHAYYVIELSSFQLDN--MYKFRANIAILLNITPDHLDRYEYKFENYANAKMRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +    ++S      D    KE+ K    A     S   +   I   +      ++ +  
Sbjct: 201 IQNQTKEDSFIYWKDDPVIKKELEKFDVKAVQYPFSELKETGSIGYIEEGMYTIEKPIPF 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++E +D      L G+  +YN+L A       GI    + + L     V  R E V   S
Sbjct: 261 NMEQED----LSLTGKHNIYNSLAAGIAANIGGIKKENIRKSLSDFKGVEHRLEKVCKVS 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A   ++    L+++ T T     V+   G D+      I   +      I 
Sbjct: 317 GVQYINDSKATNVDACWYALESMVTPT-----VLILGGRDKGNNYDAIKDLVKQKCRAIV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN +  D       I        +  +  + +    E+    D +++
Sbjct: 372 YLGADNKKLHDNFDNLGIITR------DTHSMKDCVAACRELAKSGDTVLL 416


>gi|149190575|ref|ZP_01868844.1| UDP-N-acetylmuramate-alanine ligase [Vibrio shilonii AK1]
 gi|148835573|gb|EDL52541.1| UDP-N-acetylmuramate-alanine ligase [Vibrio shilonii AK1]
          Length = 449

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 119/363 (32%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F Q  R        L +
Sbjct: 101 HERWVLAVSGTHGKTTTSSMLSWILEDCGYQPGFL-VGGVLGNFGQSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +        
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEVIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V+ R       V   G    +   K      +     
Sbjct: 207 LV-RTVPGNGRILAPRKDKALGDVLGR--GCWSEVEHTGENADWHANK---LKRDGSHFE 260

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + + G K  +  + L G+  V NAL+A      +G+   L  E L K      R E  G 
Sbjct: 261 VYLHGSKVGEVKWELVGDHNVDNALMAIAGARHVGVTPDLACEALGKFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
            ++   +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 321 VNQ-VTVYDDFAHHPTAIELTLGGLRNKVGKQRILAVLEPRSATMKRGVHKETLAQSLTQ 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRI-EAIRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     EI H         + I E ++  +E     D ++V 
Sbjct: 380 ADAVFLFQ-------PDNIDWSVEEIAHSCSQPATVSDSIDELVQAIVEQAQPGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|85373184|ref|YP_457246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
 gi|84786267|gb|ABC62449.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
          Length = 459

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 128/403 (31%), Gaps = 63/403 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSN---TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G + +VVS    L       R+     PI+        + LFA       P  ++ +TGT
Sbjct: 64  GIDGLVVSPGVPLNTHPIVERAGHFGVPII------GDIELFAQARSALPPHRVIGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + V  + + +G+ +   G                         L         
Sbjct: 118 NGKSTTTALVTHLLKEAGVEARMGGNIGL-------------------PILGEEPLPEGG 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D  R   +   A +  N+  DH+D +   ++Y  +K RLF  +      
Sbjct: 159 VYVLELSSYQIDLTR--SLACEAAALLNITPDHLDRYDGFESYAFSKGRLFT-MQGSGQF 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A    +DA ++ V   A +          +G+ I L+       +               
Sbjct: 216 ACFGCEDAQTRAVCNAAQSRRA-------EGRAICLEPEQYAAMQGD------------W 256

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   + N   A  L   +G+        L     +P R E V  +     +    A
Sbjct: 257 PALQGPHNLQNVAAAIALVEEMGVTRGDWEAGLTSYSGLPHRMEVVCEHESVLFVNDSKA 316

Query: 364 HTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
               S    L             IV      D        +G I    A    + +  PR
Sbjct: 317 TNPASTAPALAAWPADPEPRVHWIVGGLAKEDGLGECEAQLGNIKRAYA----IGEAGPR 372

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   AE++ G           EA++ A+      D++++
Sbjct: 373 F-------AELLGGRVPVERSELICEAVKQAVSNAEAGDIVLL 408


>gi|169634628|ref|YP_001708364.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii SDF]
 gi|260556380|ref|ZP_05828599.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
 gi|169153420|emb|CAP02557.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii]
 gi|260410435|gb|EEX03734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
          Length = 455

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 126/354 (35%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 113 PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 154 LLKDQP-ELLVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQ 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
                    +   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 211 G----AKKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDADGTLWLARG 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R E+V T   
Sbjct: 263 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKT-VH 321

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 322 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFSPLRSSIEKYAK 380

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+         +DV+++
Sbjct: 381 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|205351468|ref|YP_002225269.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226706330|sp|B5RH65|MURC_SALG2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|205271249|emb|CAR36037.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626495|gb|EGE32838.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 491

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 144/435 (33%), Gaps = 63/435 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+ +   + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  D       PG     NA  A  +    GID   +L  LE       RF+F+G   
Sbjct: 276 RQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R       ++++F                
Sbjct: 336 LEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             L   D  ++ D  P  E P            IR     G    I   +  +       
Sbjct: 396 NVLTQVDALLMLDVYPAGEAPTPGADSRSLCRTIRN---RGKIDPILVSDPAQVATMLAP 452

Query: 455 MLNKQDVLVVAGKGH 469
           +L   D+++V G G+
Sbjct: 453 VLTGNDLILVQGAGN 467


>gi|325954316|ref|YP_004237976.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
 gi|323436934|gb|ADX67398.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
          Length = 446

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 136/358 (37%), Gaps = 46/358 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT GK++ +S +  + +       ++  T+ +   A++               S +
Sbjct: 114 IGVAGTHGKTTTSSILGHVLK-----FAEVKSTAFLGGVAENYH-------------SSI 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G      EA        RL          T++  DH+D +  ++    +    F +L
Sbjct: 156 ILNGGEVTVAEADEFDRSFLRLS---PKLAIITSIDADHLDIYGERKEVEKS-FHEFGQL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVE 296
           +               +++  R        L+ G + +  ++ K   I +      +   
Sbjct: 212 V--------------EEKLFVRKGLNFSNSLTYGVEEEADYVAKNVRIEDGHYVFDVQTP 257

Query: 297 GKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            K+   +   LPG   + NAL A  +   +GID   ++E L +   V  RF       + 
Sbjct: 258 TKEIHNVGILLPGRHNMENALAALAVADYMGIDEKKIIEALAEFKGVKRRFNRFEYTDKI 317

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH  N L+ +++++R    + ++++VF                 +L   D  +
Sbjct: 318 Y--IDDYAHHPNELKAVIESVRELYPTKKLLLVFQPHLYTRTRDFVNEFAESLSAVDELV 375

Query: 415 VTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML--NKQDVLVVAGKGH 469
           + D  P  E P E + +E +  +        ++ ++  A+++L   K D+L+ AG G+
Sbjct: 376 LLDIYPARELPIEGVTSEWL--LSKITLDQKKVCSLEGAMDLLKTKKFDILLTAGAGN 431


>gi|313903440|ref|ZP_07836831.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466261|gb|EFR61784.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 549

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 119/369 (32%), Gaps = 47/369 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +L VTG++GK++  + + +  +++      +              L         +AL 
Sbjct: 180 KVLGVTGSAGKTTTTTLLAEGLRQAAAPGGPLAGRPVFVGGNIGRPLIEEVDRIPPEAL- 238

Query: 176 YLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    V +E SS  L+  HR          + NL  +H+D H T +AY  AK R+ 
Sbjct: 239 ---------VVLELSSFQLELCHR----APDVAVYLNLRPNHLDIHGTMEAYAAAKARIV 285

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHN-------AGCRVLSVGYQGKFIHLKKVCAIHN 287
           E L   +  A++ AD+     +  RA         +      +  +        V A + 
Sbjct: 286 E-LQEPDGWAVLNADEPAPAGLAGRAPGRVAAFAASARAARELAEREAARRGGPVRAAYL 344

Query: 288 KQQVTISVEGKDFDFLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                ++ +G+    L       L G     NAL A       G D A + +       V
Sbjct: 345 AGDRLVAWDGQGERPLLEAGAMHLRGAHNRLNALAAILAGWVAGADPAGMAQAAAAFRGV 404

Query: 343 PGRFEFVGTNSRGGRIYVDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
             R E V            Y  + + + +  L  +   T     VV   GG         
Sbjct: 405 EHRLEPVRELDG----VWYYNDSIATAPDRTLAALEAFTE---PVVLIAGGYDKGIPFDP 457

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEM 455
           +G      A   ++          E I+  I          P      +  EA+  A  +
Sbjct: 458 LGPALCRRARAVVLL-----GRTAEAIQRVIEEAARQEGKAPLVRRVASLEEAVAEARRL 512

Query: 456 LNKQDVLVV 464
               DV+++
Sbjct: 513 ARPGDVVLL 521


>gi|116334052|ref|YP_795579.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis ATCC 367]
 gi|116099399|gb|ABJ64548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           brevis ATCC 367]
          Length = 474

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 152/405 (37%), Gaps = 59/405 (14%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------LFASRLYGKHPENILAVTG 122
           ++   Y L   +  I  + P++     ++ L+           AS +       ++AVTG
Sbjct: 83  LLDPGYDLVVKNPGIFYDVPVV-----KRALADKVPVISEMELASEVAE---AELIAVTG 134

Query: 123 TSGKSSVASFVQQIC---QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++GK++  + +Q++    +R+G + +       I   A        +   L   +S    
Sbjct: 135 SNGKTTTTTMIQKMVDHDRRAGKAVYA----GNIGIPASRVAQAVTADDTLVLEVSSFML 190

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G T                          TN+  +H+DYH+T++ Y  AKM++      
Sbjct: 191 VGTTTF-----------------HPHIAVLTNIFSNHLDYHKTRENYVAAKMKITANQT- 232

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   ++  D    +E+ +++     +V+    + +     +  A      +    E   
Sbjct: 233 ADDYFVVNFDSPELRELSEQSA---AQVVPFSREAR----SQAGAYELNGDLYFKDEKLM 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG+  V NAL A  +    G+ +A ++  L     V  R ++V      GR Y
Sbjct: 286 AASDIKVPGDHNVENALAAIAVAKIKGVSTAAIVAVLRSFGGVRHRTQYVLEAD--GRQY 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            + +  ++ +E     ++  T+   +V+   G DR      ++  +   +  + +V    
Sbjct: 344 YNDSKATD-MEATEMALKGFTAP--VVLIAGGLDRGYTFEKLVPSLKAHVKAVVLVGQTA 400

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ED  K       GI       N   A+ TA E+ +  D++++
Sbjct: 401 KLLEDAAK-----KAGIQTIRLSENVETAVPTAYELSDAGDIILL 440


>gi|289758277|ref|ZP_06517655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis T85]
 gi|289713841|gb|EFD77853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis T85]
          Length = 364

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 100/336 (29%), Gaps = 29/336 (8%)

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +               +    L          + + A  HG      +      G   N+
Sbjct: 8   LGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNV 67

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    +++     K  L  + +P     ++ ADD     + K       RV S   
Sbjct: 68  GTAHLGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDN 125

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G             + + T+       +    + G+ QV NAL AA + +  G     V
Sbjct: 126 TGDVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQV 185

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-----IV 386
              L     V      V T   G  +  D Y    +S+   L+ +  I            
Sbjct: 186 AAALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWA 245

Query: 387 VFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           V G   +  +       +I      LD++ + +V     RS         ++ G  G  E
Sbjct: 246 VLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGE 302

Query: 442 KGNRIEAIRTAIEMLN-------------KQDVLVV 464
                 A RTA+ + +               DV++V
Sbjct: 303 ATADHGADRTAVNVADGDAALALLRAELRPGDVVLV 338


>gi|253576129|ref|ZP_04853461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844472|gb|EES72488.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 476

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 140/427 (32%), Gaps = 60/427 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I +G   +V +                 I VV        +         P 
Sbjct: 65  GHP--DDLIHEGVSLVVKNPGIPYTAPPVARAIELGIEVVTEVEVAYLI--------SPA 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            IL +TG++GK++  +++  + + +G+     G    I     +         +L   LS
Sbjct: 115 PILGITGSNGKTTTTTWIGNMLEAAGMRPIVAG---NIGIPLCEAAEEADEGNWLVAELS 171

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G                     +       N+   H+DYH T   Y ++K +LF 
Sbjct: 172 SFQLKGTRAF-----------------RPEVACLLNVAETHLDYHGTMDDYISSKAKLFA 214

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +   A++  DD   +E++               +  +G ++    +  + +     
Sbjct: 215 NQ-RETDRAVLNWDDPVCRELVPYIKAKLIPFSMTEELQSEGVYVEPAYIPDVEDGLARR 273

Query: 293 ISVEGKDFDFL-------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           I   G D +           LPG F + NAL A    IA G     + E L   H V  R
Sbjct: 274 IMYRGADGEVRVIIDIADIALPGRFNIENALAAVAAAIAAGAAPEALAEPLRTFHGVEHR 333

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E+V  + + G +Y + +  +NS   ++           IV+   G DR      ++   
Sbjct: 334 LEYV--DEKQGVVYYNNSKATNSKATVMALGALQAP---IVLIAGGLDRGSDYMELLPVF 388

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNR-------IEAIRTAIEMLN 457
              +  +          +  EKI     + G+   +              A++ A  +  
Sbjct: 389 KEKVKAVV------AMGQTKEKIARVAELAGLSHIVLVDTVDSAADTLRAALKEAASLAE 442

Query: 458 KQDVLVV 464
             D++++
Sbjct: 443 PGDIVLL 449


>gi|327479641|gb|AEA82951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri DSM 4166]
          Length = 447

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 129/374 (34%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R             +    I+A+TG++ KS+V + V ++   +G +    G  
Sbjct: 84  ALQEAAARGVKLSGDIELFAREAKAPIVAITGSNAKSTVTTLVGEMAAAAGRTVAVGGNL 143

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T                    AL  L+ + V    +E SS  L+    + +     +  
Sbjct: 144 GT-------------------PALDLLADE-VDLYVLELSSFQLE--TTEQLNAEVATCL 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++  DD  S+ ++           + 
Sbjct: 182 NISEDHMDRYSGLPAYHQAKHRIFRG----ARQVVVNRDDRLSRPLVGE----DVPTWTF 233

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +     ++ +    E         + G     NAL A  L  A+G+   
Sbjct: 234 GLGKPDFKGFGLFEEKGEKYLAFQFEALMPVRELKMRGAHNQSNALAALALGHAVGLPFG 293

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L+ L +   +P R ++VG  + G   Y D   T+    +             +V+   
Sbjct: 294 PMLDTLRRFTGLPHRCQWVGERA-GVSYYDDSKATNVGAALAAIEGLGADIDGKLVLIAG 352

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G  +      +   +A     + ++  D PR        AE +      I   +  EA++
Sbjct: 353 GDGKGADFSALRAPVARYCRAVVLLGRDAPR-------LAEALGEATVLIRVASLEEAVQ 405

Query: 451 TAIEMLNKQDVLVV 464
            A E     D +++
Sbjct: 406 RAAECAESGDAVLL 419


>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
 gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
          Length = 492

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 149/406 (36%), Gaps = 40/406 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS    L +       ++ I  +         F   +       I AVTGT+GKS
Sbjct: 86  ASRIVVSPGVPLSEPILAYAMDSGIPTISELGFAAEAFPKAV------KIAAVTGTNGKS 139

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V +F  QI Q++G+ +F  G   T  S A       PS     +              +
Sbjct: 140 TVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFMFPSDDPPYQ-----------VTVL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L+           G   NL  DH++ H++ + Y   K RLFE  +     +II 
Sbjct: 189 EVSSYQLELP--GSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFER-MDSSKLSIIP 245

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306
             D + ++V         +  S   +     L  V   +  ++  + V     +    L 
Sbjct: 246 HGDEFLRKVA-------YKYNSGSTKAWLGALPGVQLDNQARRAVVVVPTTKAEARLYLS 298

Query: 307 ----PGEFQVYNALV--AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                G     NA       L + +G+D   +   + +L  +P R + VG + +G     
Sbjct: 299 GLKAVGSHNAQNAATASLLSLALDLGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWIN 358

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDD 418
           D   T+  ++     I+ +   + +++ G           +  K   D      AIVT  
Sbjct: 359 DSKATN--VDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLGFKKLSDLLQNHRAIVT-F 415

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  EK   E    IP F       +A+  A ++  + D++++
Sbjct: 416 GAFGKQIEKELKEANVSIPCF-RSLTMEDAVAIAEKLSKQGDIILL 460


>gi|90962026|ref|YP_535942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius UCC118]
 gi|118595662|sp|Q1WT99|MURD_LACS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90821220|gb|ABD99859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           salivarius UCC118]
          Length = 458

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 101/262 (38%), Gaps = 18/262 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+   HIDYH T++ Y NAKMR+      ++   ++  D+   +E+ +R+  
Sbjct: 181 HPKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQT-EDDYFVVNWDNEEWQELSQRSKA 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +G      ++      + + ++              +PG   V NAL A  + 
Sbjct: 240 KIVPFSRLGKSKDGAYVAGGYLFYKEDKIM-------PVDNIKVPGTHNVENALAAIAVA 292

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G  +  + E L     V  R ++V T   G + Y D   T+  +E   K +      
Sbjct: 293 KIFGKSNEDIKEVLTTFSGVRHRTQYVTT-LNGRKFYNDSKATN--MEATEKALAGF--N 347

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             +V+   G DR      +   +   +  + +  +    + D      +   G+   I+ 
Sbjct: 348 NPVVLLAGGLDRGFTFEKLEPSLKNKVHAMIVFGE----TADLMAKAGK-EAGVEKIIKT 402

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            + + A+  A ++ N+ DV+++
Sbjct: 403 KDAVSAVPEAYKVSNEGDVILL 424


>gi|295135633|ref|YP_003586309.1| UDP-N-acetylmuramate--L-alanine ligase [Zunongwangia profunda
           SM-A87]
 gi|294983648|gb|ADF54113.1| UDP-N-acetylmuramate--L-alanine ligase [Zunongwangia profunda
           SM-A87]
          Length = 451

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 144/426 (33%), Gaps = 57/426 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V + A   ++           ++     + L L +S  +       LAV GT GK++  
Sbjct: 76  VVYTPAVPKENLQLQYFIEEQFILKKRA-EVLGLISSNRF------TLAVAGTHGKTTTT 128

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  + + +         T+ +   ++D +             S L  +G   +  EA 
Sbjct: 129 AILGHLLKETNAP-----VTAFLGGVSEDIQ-------------SNLILKGDEVIVAEAD 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
               D+  L  +     +  ++  DH+D +   +    A  + F  LLPK+    +    
Sbjct: 171 EF--DRSFL-HLSPNIAAINSMDADHLDIYGVNEH-LQASFKAFAALLPKDGILFVKNGL 226

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               + +    +A    +++   G   H          +  T+ + G             
Sbjct: 227 PLEGKTIGIEDDADFSAINIKILGGNYHFDLKTPTEIIEGFTLHLPG-----------RH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NA+ A  + +  G  +  + + L+    +  RF +     +   +  DYAH    ++
Sbjct: 276 NVLNAVTALAMALEYGSPAEQLRDALQSFKGIRRRFSYKIKTDQK-VLIDDYAHHPAEIK 334

Query: 371 MILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            + + +R +      +VVF                  L   D  ++ D  P  E P +  
Sbjct: 335 AVFEAVREMYPKMKNLVVFQPHLFSRTRDFVDDFAEKLSQFDEVMLMDIYPAREKPIEGV 394

Query: 430 AE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
               ++  I    ++  + E +   I     + V+++ G G      + N       + +
Sbjct: 395 DSQWLLEKINNPNKQLVKREELSAKIITSKAK-VVLMLGAGD-----IGN-------EVE 441

Query: 488 IIREIL 493
            ++  L
Sbjct: 442 TVKRAL 447


>gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38]
 gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38]
          Length = 780

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 128/380 (33%), Gaps = 38/380 (10%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
             +F AI G   D HL+I + I++G    VV            +      ++V+N+ K L
Sbjct: 6   NTLFFAIKGQNHDAHLYIEELISKGVRYFVVE------YIPEHLYEKANFIIVENSLKAL 59

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A     K     + +TG++GK+ V  ++  +                 S      R 
Sbjct: 60  QQTAIGYRKKFDFPFVGITGSNGKTIVKEWLNFLL----------------SPNHLIVRN 103

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                  +   LS L  +G+    +     S           I    G  TN+G  H + 
Sbjct: 104 PKSYNSQVGVPLSVLGVEGIYDFGLFETGISLPNEMFQLEKIIAPKYGILTNIGAAHDEG 163

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
              ++A    K++LFE          I+ +   S EV+  ++       S   +     L
Sbjct: 164 FPNREAKIKEKIKLFENCT------DIFLEKNESIEVL-LSNKIQKHTWSFSDETA-HLL 215

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                 +N  Q+T       F  + P      + NA+      + +  D + + + + +L
Sbjct: 216 VTQKKENNTTQLTFKNSTTSFSVIVPFSDANSIENAITCVNFMLFLNEDISFIQKRVGEL 275

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---ITSGRIIV--VFGCGGDR 394
           + V  R +     +    I   Y+    SL++ L  +          II+  +F  G   
Sbjct: 276 YPVELRLQAKKGINNCLVIDDSYSLDYPSLKIALDFLEQQKLHDKKTIILSDIFNSGIAS 335

Query: 395 DQGKRPIMGKIALDLADIAI 414
           +     +   ++ +     I
Sbjct: 336 ETLYNQVKNLLSKNKIGRII 355


>gi|227892845|ref|ZP_04010650.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ultunensis
           DSM 16047]
 gi|227865347|gb|EEJ72768.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ultunensis
           DSM 16047]
          Length = 437

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 112/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +++ IG                P   +        
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTTYLIG---------DGRGKGVPDSRFFV------ 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 + + E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 155 ------YEADEYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G++        +V       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFKDTDDFQATQVEKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD   F   L G+  + N+     +     +    + + L        RF     +   
Sbjct: 255 GKDLGQFEIHLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R    + +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPNKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IP       + I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREKNGDISSDDLVKNIPSSEVIDLDNIADLTK-----NKNSVIVFMGAGD 425


>gi|222151664|ref|YP_002560820.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus
           JCSC5402]
 gi|254766009|sp|B9E7F6|MURC_MACCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222120789|dbj|BAH18124.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus
           JCSC5402]
          Length = 431

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 121/342 (35%), Gaps = 48/342 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            D    +R++   L V     FL  F S+         +AVTG+ GK+S    +  +   
Sbjct: 72  DDHEEIVRAHELGLTVTRYHDFLGNFMSQY------TSVAVTGSHGKTSTTGLLSHVMNG 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG   T             +  Y    LSY                       
Sbjct: 126 DKKTSYLIG-DGTGMGMPGSEYFAFEACEYRRHFLSY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMK 258
                     TN+  DH DY  +    FNA    F+E+  K   AI+   DD   +++  
Sbjct: 162 ---SPDYAIITNIDFDHPDYFASMSDVFNA----FQEMTKKVKKAIVACGDDENLRDI-- 212

Query: 259 RAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNAL 316
               A   +   G++       K +       Q  + ++G+ FD F+ P+ G+ QV NAL
Sbjct: 213 ---EADIPIYYYGFKEDNKVVAKNMKTTPQGTQFEVYIDGELFDTFVTPMYGDHQVLNAL 269

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               +C   G+D+A V   L     V  RF     + +   +  DYAH    ++  L++ 
Sbjct: 270 AVITICHLEGLDNAAVKHALSTFGGVKRRFSEKIQDEQ--ILIDDYAHHPTEIKATLQSA 327

Query: 377 R-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                  ++I +F                 +L LAD   + D
Sbjct: 328 HLKYPERKVIAIFQPHTFSRTSAFLEDFANSLKLADKVYLCD 369


>gi|325102886|ref|YP_004272540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter saltans
           DSM 12145]
 gi|324971734|gb|ADY50718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter saltans
           DSM 12145]
          Length = 448

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 133/383 (34%), Gaps = 44/383 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++       I +++GL+    G                          
Sbjct: 105 AKTICITGSNGKTTTTLLTYHILKKAGLNVGLAGNIG-------------------YSFA 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             ++ +   +  +E SS  LD   +   K       N+  DH+D +    + Y ++K R+
Sbjct: 146 KQVAEENFDYYVLELSSFMLDN--MYDFKADIAVLLNITPDHLDRYNYEMKNYVDSKFRI 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK----Q 289
            +    ++       D      + +   NA     S+  + +     +   I+      +
Sbjct: 204 IQNQTSQDHFIYCADDPETIAALDRHQINAERHPFSITNKVENGAFLENDTIYFNLNNTE 263

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +T++++         L G   VYN++ +      + + +  V E +     V  R EFV
Sbjct: 264 PLTMTIQ------ELALQGSHNVYNSMASGISAKILELRNETVRESMGDFKNVAHRLEFV 317

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              S    I    A   NS    L+++ +      +V+   G D+      +   +   +
Sbjct: 318 AKISGITFINDSKATNVNSTWYALESMSS-----DVVLILGGVDKGNDYSMLRNLVKEKV 372

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + I  +  DN      + I       +   +   +  EA+  A  +  K   ++++    
Sbjct: 373 SSIVCLGLDN------KAIHDAFEDDVEIIVNTKSAAEAVEVAYHLAKKGSTVLLS-PAC 425

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
            +  +  N E +       +RE+
Sbjct: 426 ASFDLFKNYEDRGDQFKAAVREL 448


>gi|260910912|ref|ZP_05917554.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634969|gb|EEX53017.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 463

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 137/421 (32%), Gaps = 51/421 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IPQA       +VV +    +D    +        +    + L      L G      L 
Sbjct: 63  IPQACKNAKSCLVVYTPAIPEDHKELVYFRENGFEIQKRAQVLGTLTRALKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
             GT  K++ +     I  +S            +   +++               +Y+ S
Sbjct: 117 FAGTHAKTTTSCMCAHIMHQSHPDCNAF-----LGGISKNYGT------------NYILS 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               +V +EA       H L   +      T+   DH+D + T++AY  +  R +  L+ 
Sbjct: 160 PQSEYVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYMES-FRHYTTLIQ 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    II          +K     G +V          H + V   +           + 
Sbjct: 216 EGGALII-----KKGLALKPNVKPGVKVYQYSLNEGDFHAENVKIDNGNITFDFVSPIES 270

Query: 300 F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +     P    + NA+ A  +    G ++  +   ++  H V  RF+F    +     
Sbjct: 271 VKNVTLGHPVPINIENAVAAMAMAQLNGCNAEELRYGIKTYHGVDRRFDF-KIKTPNLVF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DYAH  N +    ++IR +   R I  VF                 AL L +  I+ D
Sbjct: 330 LSDYAHHPNEILQSARSIRQLYKDRKITAVFQPHLYTRTRDFYKEFAKALSLLNEVILCD 389

Query: 418 DNPRSEDPEK------IRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
             P  E P K      I   +  G+    I K +        +++  ++  DVLV  G G
Sbjct: 390 IYPAREQPIKGVSSKLIYDNLEKGVEKSMISKED-------VLKLARERDFDVLVFLGAG 442

Query: 469 H 469
            
Sbjct: 443 D 443


>gi|225011611|ref|ZP_03702049.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
 gi|225004114|gb|EEG42086.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
          Length = 445

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/337 (19%), Positives = 123/337 (36%), Gaps = 43/337 (12%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
              +I + +GL+    G   T                        ++ +   +  +E SS
Sbjct: 121 LTYEILKNAGLNVGLAGNIGT-------------------SFARQVAQEQFDYYVLEISS 161

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADD 250
             LD   +          TN+  DH+D +  + + Y  +K ++ +    K+   +  ADD
Sbjct: 162 FQLDN--IHDFAPHISVITNITPDHLDRYSYSLENYIKSKFKIIQNQTQKD-FFLFNADD 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLP 307
              KE +    N   +V   G++     +K+  + H    + +    K+       F L 
Sbjct: 219 PILKEAISEHKNKASKV-PYGFE-----VKREGSTHENDHLILKHRNKNTMIDTTQFTLT 272

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NA+ AA +   + I    + E L      P R E V T  R   I    A   N
Sbjct: 273 GRHNLLNAMAAATIGSLLDISKDTIRESLTHFKGAPHRMEKVLTIQRVSYINDSKATNVN 332

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
                   + +I +  I +V   G D+      ++  I      I  + +DN   ++  +
Sbjct: 333 ---ATYFALESIDTPLIWIV--GGVDKGNDYTTLLPLIRTKAKAIICLGEDNEALKNTFE 387

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +I      FIE  +  EA++ A ++   +D +++
Sbjct: 388 RVTDI------FIETQSMSEAVKIAHKVAAPKDTVLL 418


>gi|330888578|gb|EGH21239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 350

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 117/357 (32%), Gaps = 37/357 (10%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG+SGK++V   +  I +  G          T+ +   +       P+ L   L    
Sbjct: 1   AMTGSSGKTTVKEMLASILRTRG----------TVLATRGNLNNELGVPLTL---LELAP 47

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + + AS  G     +   K      TN G  H+           AK  + E L 
Sbjct: 48  EHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGL- 106

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEG 297
                A++  +D       KRA N      ++      +H   +          TI+   
Sbjct: 107 NASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPL 166

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G   V NAL AA    A+G+    ++  L  +  V GR   V   S G R
Sbjct: 167 GVAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGR-AVVQIASNGTR 225

Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIA 413
           I  D Y     S+   +  +   T   ++V+   G      +QG R +    A  ++ + 
Sbjct: 226 IIDDTYNANPASINAAVNILTGFTGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALY 285

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
            V                + H +  F E      ++ E I       +    L++ G
Sbjct: 286 AVGP-------------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPNTTLLIKG 329


>gi|312881956|ref|ZP_07741713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370392|gb|EFP97887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 450

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 126/363 (34%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK++ AS +  I ++ G     +     + +F    RL   S  ++ +
Sbjct: 101 QDRWVLAVSGTHGKTTTASMLTWILEKCGYEPGFL-VGGVLGNFGVSARLGK-SVFFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D     +A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D   K+V+ R         S G  G +   K+     +  Q  
Sbjct: 207 LV-RTVPSVGRILFPQQDQEIKDVLSR--GCWSESESSGIGGDWQAEKQ---HADGSQFA 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  EGK      + L G   + NAL+A      +G++     E L+       R E  G 
Sbjct: 261 VFFEGKKVASVNWNLIGNHNINNALMAIAAARHVGVEPLHACEALDTFINTKRRLELKGM 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
              G  +Y D+AH   ++E+ L+++R   SG+ I+           +      +A  LD 
Sbjct: 321 -VNGVEVYDDFAHHPTAIELTLESLRNKASGKRIIAVLEPRSATMKRGVHKNSLARSLDE 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVA 465
           AD   +         P+ I     ++     G     + IE +  A+   +   D + V 
Sbjct: 380 ADAVFLYQ-------PDNINWSLEDVASQCRGEAAVSDNIEELVAAVTTFVQSGDRICVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|108758004|ref|YP_630156.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Myxococcus xanthus DK 1622]
 gi|108461884|gb|ABF87069.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Myxococcus xanthus DK 1622]
          Length = 474

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/380 (15%), Positives = 116/380 (30%), Gaps = 31/380 (8%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           F +   S    +    ++A  GT GK++ +S +  +   +G     +     ++     N
Sbjct: 93  FPAALGSLFLDRSHSVVVA--GTHGKTTTSSLMAHVLVAAGKDPSFL--VGGVTQNYAGN 148

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                 P ++ +   Y ++                       +      T++  DH D  
Sbjct: 149 YRVGKGPHFVVEGDEYDTAYWDKGSKFLHY------------RPRTAILTSVEFDHADIF 196

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL- 279
           +    Y  A    F  L+P++   ++ A    + ++ +                   +  
Sbjct: 197 RDLPHY-EATFEKFVRLIPQDGQLVVCAAYPNAVKLAREGCPGRVVTYVAKEGADADYTP 255

Query: 280 KKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           + +       +  +   G+       P+ G   V NAL        +G+    + + L  
Sbjct: 256 RNLSFGPEGARFDVVARGEVQGTVQLPMGGAHNVENALAVIAAAQGLGLTFDEIAQGLAT 315

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG-GDRDQ 396
              V  R E  G    G  +  D+AH   ++   +  I       R+  +F        +
Sbjct: 316 FSGVKRRQEIRG-EPDGVLVIDDFAHHPTAVRETIAAIHHRYPERRLWAIFEPRSNTSRR 374

Query: 397 GKRPIMGKIALDLADIAIVT-----DDNPRSE--DPEKIRAEI-IHGIPGFIEKGNRIEA 448
                    A   A  A +      D  P  E  D  K+  ++   GIP      +    
Sbjct: 375 NIHQEDYAHAFPGAARASLKVPERHDKVPVGEELDVRKLITDLQAQGIPAEGS-TDVQAL 433

Query: 449 IRTAIEMLNKQDVLVVAGKG 468
           +  A       DVL+V   G
Sbjct: 434 VDLAAREARPGDVLLVMSNG 453


>gi|318057552|ref|ZP_07976275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actG]
 gi|318079765|ref|ZP_07987097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actF]
          Length = 474

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 146/414 (35%), Gaps = 57/414 (13%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G E +V +  +      F+A   +  P+    +        A RL G      LAVTGT+
Sbjct: 70  GTELVVTAPGWQPGKPLFAAAEAAGVPVW--GDV-----ELAWRLRGPDAAPWLAVTGTN 122

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +G  +  +G                     ++   + L+ +    
Sbjct: 123 GKTTTVRMLSAILEAAGHRTAAVGNIG------------------VSLLDAVLAEEPYDV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H +  AY   K R++E     +   
Sbjct: 165 LAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMAAYAADKGRVYEG---NQVAC 219

Query: 245 IIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-----SVEGK 298
           +  + D  ++E+++ A    GCR +             V   +   +  +       +  
Sbjct: 220 VYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGVVEGYLVDRAFVPDRAQQAQEL 279

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   P    + NAL AA L  A G+ +  V   L      P R E V T      +
Sbjct: 280 AEVADVDPPAPHNIANALAAAALARAFGVPATAVRAGLRAFRPDPHRIEHVATIDGVAYV 339

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               A  +++ E  L            +V+  GG         + + A       ++   
Sbjct: 340 DDSKATNTHAAEASLAAYEP-------IVWIAGGLAKGATFDELVQGAAKRLRAVVLM-- 390

Query: 419 NPRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVA 465
                D   IR  +    P   +   +R       EA+R A  +    D +++A
Sbjct: 391 ---GRDRALIREALARHAPNVPVVDLDRADTGAMSEAVREAAGLAESGDTVLLA 441


>gi|292489359|ref|YP_003532246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
 gi|292898417|ref|YP_003537786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291198265|emb|CBJ45371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291554793|emb|CBA22618.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
          Length = 438

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 144/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    +   + ++ +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPSLMAAAIAGVEIIGDVELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ Q +G      G                         +  L  Q      +
Sbjct: 118 TVTTLVGEMAQAAGWQVGVGGNIGL--------------------PVLTLLQQPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+  R   +   A +  N+  DH+D +    Q Y  AK+R++E      +  ++
Sbjct: 158 ELSSFQLETTR--SLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYEN----ATVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R LS G      HL +           + V+G+        
Sbjct: 212 NADDAMTIPV----RGADARCLSFGADVGDYHLTRQQGSTW-----LRVQGEKVLNTDEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L  L     +  RF+ V  ++    I    A 
Sbjct: 263 HLVGQHNYTNALAALALADAVGLPRASSLTALTTFKGLAHRFQLVHEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +    +G + ++   G  +     P+   +  D   I     D     +
Sbjct: 323 NVGSTEAALNGL--HPAGILWLLL-GGDGKSADFSPLTRYLQGDRIRIYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI       ++      A+R     +   D++++
Sbjct: 377 LAALRPEIA------VQTETMAAAVRQIATRVQPGDMVLL 410


>gi|169833121|ref|YP_001694158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226722947|sp|B1IAM3|MURD_STRPI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|168995623|gb|ACA36235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 450

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 148/444 (33%), Gaps = 55/444 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
               + +G + I       L D    +    P +  +N    K L+           A  
Sbjct: 49  AQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKGIPVLTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + + ++   +G      G    I   A           
Sbjct: 109 ISE---APIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSG---NIGYPASQVAQIASDKD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   LS     GV                           TNL   HIDYH +   Y  
Sbjct: 163 TLVMELSSFQLMGVQEF-----------------HPEIAVITNLMPTHIDYHGSFSEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  + +  +      ++  +   +K++  +         ++         K   A    
Sbjct: 206 AKWNI-QNKMTAADFLVLNFNQDLAKDLTSKTEATVIPFSTLE--------KVDGAYLED 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q+    E         +PG   V NAL    +     +D+  + E L     V  R +F
Sbjct: 257 GQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  + +G + Y D   T+  +    K +        +V+   G DR      ++  I   
Sbjct: 317 VD-DIKGVKFYNDSKSTN--ILATQKALSGF-DNSKVVLIAGGLDRGNEFDELVPDI-TG 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           L  + I+       +  E+++         ++E  +  +A R A E+  + DV++++   
Sbjct: 372 LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELAIQGDVVLLS-PA 424

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           + +  +  N E +  +  D + E+
Sbjct: 425 NASWDMYANFEVRGDLFIDTVAEL 448


>gi|332292531|ref|YP_004431140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170617|gb|AEE19872.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 445

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 133/355 (37%), Gaps = 44/355 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++       I +++G++    G                          
Sbjct: 103 ATIVGITGSNGKTTTTMLTGFILEQAGINLGVAGNIG-------------------DSYA 143

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             ++ + +    +E SS  LD   +           N+  DH+D +    + Y  +K R+
Sbjct: 144 KMVAQKEIDTYVLEISSFQLD--GIADFAPHIAVVLNVTPDHLDRYDYKFENYIASKFRI 201

Query: 234 FEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +  KE+  +IY ADD  S + +K+ H    ++L      +F    +  A      +T
Sbjct: 202 --AMNQKETDYLIYDADDPVSVDWLKK-HPVKSKLLPFSLDKEF----ENGAFIKDNNLT 254

Query: 293 ISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + +    F        L G+    NA+ A+ +   + I  A + E LE    V  R E V
Sbjct: 255 VQLNNNTFTMATNNLALKGQHNKKNAMAASTVANLLNIRKATIRESLEGFQGVEHRLEQV 314

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +    I    A   N        + +++   + +V   G D+    R +   +   +
Sbjct: 315 LKINNVQYINDSKATNVN---ATFYALDSMSEPTVWIV--GGVDKGNNYRDLYPLVNEKV 369

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I  +  DN       K+ +   + +   +E  +  EA++ A ++  + D +++
Sbjct: 370 KAIICLGVDN------AKLMSHFGNMVDIIVETPSMSEAVKIAYKVSERGDNVLL 418


>gi|269960901|ref|ZP_06175271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi 1DA3]
 gi|269834341|gb|EEZ88430.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi 1DA3]
          Length = 452

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 122/359 (33%), Gaps = 27/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D   ++V++R           G  G +   K V       +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQSLQDVIER--GCWTEKQFSGVDGDWQAHKLVVD---GSKFE 260

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +S++G+    + + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VSLQGEKVGVVDWDLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 321 E-LGVTVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      ++I  +     P F++       +   +E     D ++V   G
Sbjct: 380 ADEVFLFQPDNIDWSVQEIADQCKQ--PAFVDAEMDSF-VAKIVEQAQPGDQILVMSNG 435


>gi|227538303|ref|ZP_03968352.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241818|gb|EEI91833.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 452

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 125/362 (34%), Gaps = 49/362 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +AV GT GK++ ++ +  I + SG      +G  S  S++  +      +         
Sbjct: 115 TIAVAGTHGKTTTSTMIAHILKDSGYDCSAFLGGIS--SNYDSNVLFGANNT-------- 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V   + E     L  H            T+   DH+D +   +++      LF 
Sbjct: 165 ------VVVEADEYDRSFLTLH------PNIAVVTSADADHLDIYGD-ESHLIESFSLFL 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-IS 294
           + + +               ++K       ++   G     ++ + +     +     + 
Sbjct: 212 DRVVEGGT-----------RIVKTGLPFKGQISYSGKGEGDVYAENIHVRDGEFYFDYVH 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            EGK  D    +PG   V NA+ A      +GI  A ++  L     V  RFE++  N +
Sbjct: 261 PEGKISDIHLGIPGIHNVENAVAAITAARLLGIADAKIVTALSTFKGVKRRFEYIVRNPQ 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    L   + ++R    + ++ VVF                  L +AD  
Sbjct: 321 TIYI-DDYAHHPEELRAFISSMRKLYPTKKLTVVFQPHLFSRTRDFVDGFAEVLAMADEL 379

Query: 414 IVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           ++ +  P  E P +      +  +I       +     ++ I+       K +++V  G 
Sbjct: 380 LLMEIYPARELPIEGVTSTWLADKIALENKRVVSPQEVLDIIKE-----EKPELVVTVGA 434

Query: 468 GH 469
           G 
Sbjct: 435 GD 436


>gi|312173524|emb|CBX81778.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 438

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 144/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    +   + ++ +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPSLMAAAIAGVEIIGDVELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ Q +G      G                         +  L  Q      +
Sbjct: 118 TVTTLVGEMAQAAGWQVGVGGNIGL--------------------PVLTLLQQPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+  R   +   A +  N+  DH+D +    Q Y  AK+R++E      +  ++
Sbjct: 158 ELSSFQLETTR--SLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYEN----ATVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R LS G      HL +           + V+G+        
Sbjct: 212 NADDAMTIPV----RGADARCLSFGADVGDYHLTRQQGSTW-----LRVQGEKVLNTDEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L  L     +  RF+ V  ++    I    A 
Sbjct: 263 HLVGQHNYTNALAALALADAVGLPRASSLTALTTFKGLAHRFQLVHEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +    +G + ++   G  +     P+   +  D   I     D     +
Sbjct: 323 NVGSTEAALNGL--HPAGILWLLL-GGDGKSADFSPLTRYLQGDRIRIYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI       ++      A+R     +   D++++
Sbjct: 377 LAALRPEIA------VQTETMAAAVRQIATRVQPGDLVLL 410


>gi|153830363|ref|ZP_01983030.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
 gi|148874170|gb|EDL72305.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
          Length = 403

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 143/414 (34%), Gaps = 48/414 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS+A + Q+          I +V    + L+      +G      +AV GT GK++  
Sbjct: 2   VVVSTAINEQNPEIQAAREKRIPIVRRA-EMLAELMRFRHG------IAVAGTHGKTTTT 54

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V QI   +GL    +      S+       ++         ++       + +     
Sbjct: 55  ALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RILIAEADESDASFL----- 103

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      ++ +    TN+  DH+D +             F   LP    AI+  DD
Sbjct: 104 ----------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDD 153

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPG 308
              +E++ R      +V++ G+ +   + ++       + Q T+  +GK + D    +PG
Sbjct: 154 PVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPG 210

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHT 365
                NA  A  +     I    +L  +        RF+ +G   T +    +  DY H 
Sbjct: 211 RHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHH 270

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +++ +K  R      R++++F                  L+  D+ ++ D     E 
Sbjct: 271 PTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVLEQVDVLLMLDVYAAGEK 330

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGH 469
           P  I       +   I    +I+ I              +L   D+++  G G 
Sbjct: 331 P--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAGD 382


>gi|326693779|ref|ZP_08230784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           argentinum KCTC 3773]
          Length = 448

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 54  EDGHLFIP-----QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-- 106
            +G  F+P     Q  A G   I    A SL      +  N  I    +T       A  
Sbjct: 37  VNGGDFVPDDTFNQLQAAGVTFINHDEATSLDASFDYLIKNPGIPY--DTALVQRAIALD 94

Query: 107 -------SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                  +         ++AVTG++GK++  S ++++    G     +     I +   +
Sbjct: 95  IPVLTEVAVALSSFEGRLIAVTGSNGKTTTTSLIREMLLADGQR---VTTAGNIGTPVSE 151

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                 +   L   LS     G                 +  I+      TN+  +H+DY
Sbjct: 152 VVADLTADDTLLLELSSFQLMG-----------------VPDIQPDIALITNIFANHLDY 194

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T++ Y  AK     +L   ++ A     +A S +  +   +   +V+          +
Sbjct: 195 HGTREQYVAAKF----QLTQNQTVAQTLVLNADSPDTAQFTADTAAQVVPFSRTQSGHRV 250

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      + I  +         L G   + N L A  +    G+++  + + L   
Sbjct: 251 AAT-----AGNLVIDDQVVMPLTAIKLVGPHNLENILAAVTVAKLAGVENEAIRQVLASF 305

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E++ T+     +Y + +  ++ +E     + +     I      G DR     
Sbjct: 306 GGVAHRLEYLFTDQ--AVMYYNDSKATD-IEATQTALDSFDQPTIW--LAGGLDRGDDLT 360

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  +      +A         E  +K+ A             +   A R A+ +    
Sbjct: 361 RLLPNMTHVKTVVAF-------GETQQKVVAVAKAAGLPVQTVDDVTAAARLAVTLAQAG 413

Query: 460 DVLVV 464
           DV+++
Sbjct: 414 DVVLL 418


>gi|254515240|ref|ZP_05127301.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium NOR5-3]
 gi|219677483|gb|EED33848.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium NOR5-3]
          Length = 460

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 133/418 (31%), Gaps = 49/418 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA    +          I VV        L   R         +AV GT GK+
Sbjct: 61  ADVVVISSAVKADNAELVAAREQRIPVVRRAEMLAELMRHRYG-------IAVAGTHGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +      ++  + PT  I                    ++       + +  
Sbjct: 114 TTTSLIAAL-----FAAADLDPTFVIGGRVNSTGTHAQLGAGRY-LIAEADESDASFL-- 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH++ +    A        F   LP    A++ 
Sbjct: 166 -------------HLQPMVTVVTNIEADHMETYGGDFAQLRRTFVEFLHNLPFYGLAVLC 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLF 304
            DDA    +     + G  +LS G+ +     +  +     + +  +             
Sbjct: 213 IDDAV---LAGLGEDLGRPMLSYGFSESADYRITGLEPAGLRTRFVVERPDGYPALPITL 269

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF---EFVGTNSRGGRIYVD 361
            +PG   V NA  A  +    GID  ++ E LE+   V  RF   E V    +   +  D
Sbjct: 270 NMPGNHNVLNATAAVAVATDQGIDDQVIQETLERFSGVGRRFSVYEGVKLGQQVVTLVDD 329

Query: 362 YAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    +   L    +     RI++V+                  L   D  ++ +  P
Sbjct: 330 YGHHPTEVAATLASARQAWPERRIVMVYQPHRFTRTRDLYDDFVSVLSDTDFLVLLEVYP 389

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQDVLVVAGKGH 469
             ED   +       +   I +  +++ +  A          ++L   DVL+  G G 
Sbjct: 390 AGED--AVAGADSRSLARSIRQRGQLDPLYAASAGDVPTLLADVLEADDVLITQGAGD 445


>gi|303230748|ref|ZP_07317495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514508|gb|EFL56503.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 454

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 95/296 (32%), Gaps = 24/296 (8%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS  +        + A         +     +     N+  DH+  H+T + Y  AK R+
Sbjct: 147 LSEAAYHMPEGGYLVAELSSYQLETIKSFCPLGAIVLNVTPDHLARHKTMENYAAAKARI 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F    P+    ++  DD   + + K AH+   +VLS+       H     A         
Sbjct: 207 FMNQNPEN-FVVLNDDDPIVRAMKKDAHS---KVLSISQ----HHKVDSGAYFEGNTCYA 258

Query: 294 SVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++GK           + G   + N L    L  A+G++   +   +E+ H V  R E V
Sbjct: 259 VLDGKATPVIDTEHIHIKGSHNIENILAVIALTYALGVEVEHIKHTIEQFHGVEHRLERV 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T           A  ++S+   L            V+   GG            I    
Sbjct: 319 TTFHDVTFYNDSKATNTDSVVKALDAF------DKPVILLAGGHDKMTPLEDFMNIVKAH 372

Query: 410 ADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +   R E        +  G+       +  EA+    ++    D++++
Sbjct: 373 TKEVIFMGEAADRFESVA-----VKMGVQHIHRAQSMKEAVALGYQLAKAGDIVLL 423


>gi|258423773|ref|ZP_05686659.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
 gi|257846005|gb|EEV70033.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
          Length = 449

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVQP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    + 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +    A +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMENVRAMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   K            IE  N  +A+    +++   DV+++
Sbjct: 374 VF-------GQTKTKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|58337842|ref|YP_194427.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           NCFM]
 gi|227904491|ref|ZP_04022296.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           ATCC 4796]
 gi|68565671|sp|Q5FIS8|MURC_LACAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|58255159|gb|AAV43396.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus acidophilus
           NCFM]
 gi|227867746|gb|EEJ75167.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           ATCC 4796]
          Length = 437

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 109/358 (30%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +S+ IG          D+R                
Sbjct: 110 IGISGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR--GKGVDDSRFFVYEAD--------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 159 ----------EYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G++         +          +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFKDTDDFQAVDIKKTTTGSSFNVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD   F   L G+  + NA     +     +    + E L        RF     +   
Sbjct: 255 GKDLGRFEIHLFGDHSILNATAVIAVAYTEKVPMDAIREGLLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKIR-AEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T       E    I   +++  IPG      + I  +       NK  V+V  G G 
Sbjct: 373 ITPIYASAREANGDITSEDLVKNIPGSEVIDLDNIADLTK-----NKNSVIVFMGAGD 425


>gi|323356550|ref|YP_004222946.1| UDP-N-acetylmuramate-alanine ligase [Microbacterium testaceum
           StLB037]
 gi|323272921|dbj|BAJ73066.1| UDP-N-acetylmuramate-alanine ligase [Microbacterium testaceum
           StLB037]
          Length = 468

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 135/448 (30%), Gaps = 53/448 (11%)

Query: 50  VGNKEDGHLFIPQAI-----AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTR 99
            G +  G      A      A+GA   V   A  L D      +  I    P  V    R
Sbjct: 37  RGIRVSGSDRADSAALRDLAARGATVYVGHDAAHLGDADTVVHTGAIWPENPEFVTAKER 96

Query: 100 KFL-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
                         + G+    +++V G  GK++    +    +   L    +       
Sbjct: 97  GLHVIHRSQALHWLIGGR---RLVSVAGAHGKTTSTGMIVTALRALELDPTFVN------ 147

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                          +   L   S  G   + V  +        L          TN+  
Sbjct: 148 -------------GGVIADLGASSGTGSDDLVVIEADESDGTFELYDTS--VALITNVDP 192

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D++ ++ A+  A               +I ADDA ++ V +R       V++ G   
Sbjct: 193 DHLDHYGSRDAFDAAFA---RFADAASEAVVISADDAGARAVRERI--THANVITFGEDP 247

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                            T++ +G+  +    +PG     NA  A  +   +G   A    
Sbjct: 248 GADVRLSGIRTDGPVAFTLTADGESVEVQLRVPGAHNAVNAAGAVAVLRVLGHSLADAAR 307

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD- 393
            +E       RFE  G    G  +Y DYAH    +   L   RT+     I+        
Sbjct: 308 AVEGFGGTVRRFELHGVQ-HGVSVYDDYAHHPTEVAAALSAARTVVGEGRIIAIQQPHTY 366

Query: 394 -RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEIIHGI----PGFIEKGNRIE 447
            R Q       ++    AD  ++ D     EDP   +  E++ G            +   
Sbjct: 367 SRTQEMYREFAEVLETHADHTVMLDVYGAREDPVPGVTGELVSGAFADPEHVHYVPDWQA 426

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           A      +    D ++  G G+    I+
Sbjct: 427 AADYTARIARPGDYVITLGCGN-VYQII 453


>gi|227431980|ref|ZP_03914000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352265|gb|EEJ42471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 449

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 123/350 (35%), Gaps = 43/350 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++  S ++ + +  G +    G      S              L +  +
Sbjct: 112 RLIAVTGSNGKTTTTSLIRDMLKADGQNVITAGNIGVPVSEVV---------FDLTREDT 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L         +E SS  L    L  I+      TN+  +H+DYH+T+  Y  AK  +  
Sbjct: 163 LL---------LELSSFQLL--GLPDIQPDIALVTNIFSNHLDYHKTRANYVAAKFHI-T 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++ AD    ++  K  +    +VL      +   +       +   +T++ 
Sbjct: 211 RHQNANQYLVLNAD---GQDTEKFKNETEAQVLEFSRTKQHFPVA-----FSNGNLTLTD 262

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E         L G     N L A  +    G+    + E L+    V  R +++ T    
Sbjct: 263 EIVMPTKDIKLVGPHNQENILAAVTVANLAGVSKPAIREVLKTFSGVAHRLQYLFTVGD- 321

Query: 356 GRIYVDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                 Y  + +  +E     + +     I +  G G +R      ++  +    A IA+
Sbjct: 322 ---VKYYNDSKATDIEATQTALDSFDCPTIWI--GGGLERGDDLERLLPNLKNVKAVIAV 376

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E  +KI           I   +   A   A+++ +  DV+++
Sbjct: 377 -------GETQQKIVTLARKAGKPVIAVTDVEHAASVAVQLASPGDVVLL 419


>gi|254421594|ref|ZP_05035312.1| cyanophycin synthetase [Synechococcus sp. PCC 7335]
 gi|196189083|gb|EDX84047.1| cyanophycin synthetase [Synechococcus sp. PCC 7335]
          Length = 925

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 123/363 (33%), Gaps = 35/363 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I ++       +G T+T   +  ++ +          A   L    V    +E + 
Sbjct: 503 LTAHIFRQ---VYSMVGYTTTDGIYIGNHLVEKGDTTGPQSARLILEDPTVEMAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            GL +  L   +   G   N+  DH+           AK++ +  E +      ++ ADD
Sbjct: 560 GGLLRSGLAFDQSDVGIVLNVAADHLGIGDIDTIDQLAKLKAVVAESVAGSGYVVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG------------KFIHLKKVCAIHNKQQVTISVEGK 298
                + +R   A     S+  +               ++ +   +I  +  +   ++ +
Sbjct: 620 HRVAAMAERVKAAKVAYFSMDSKNPLVRSHLANGGIAAVYEEGYLSIIQQDWLHRIIKAE 679

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
                      F + NAL A+      G+    +   L         +PGR       + 
Sbjct: 680 RVPLTMGGRAPFMIANALAASLAGFVQGVKIEQIRAALHSFQPSASQIPGRMNLFDMGNY 739

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH       I   ++      I VV   G  RD+    + G++++D+ D  I
Sbjct: 740 HALV--DYAHNPAGYAAIGSFVKNWPGPAIGVVGAPGDRRDEDLIEL-GQLSVDIFDQVI 796

Query: 415 VTDD-NPRSEDPEKIRAEIIHGIP-----------GFIEKGNRIEAIRTAIEMLNKQDVL 462
           + +D + R   P  + A I  GI             +  + +  EA+  A++      ++
Sbjct: 797 IKEDKDRRGRSPGAVAALIEQGILQTDESQRSTDFSYHIELDESEAVNHALDSAPDNCLV 856

Query: 463 VVA 465
           V+ 
Sbjct: 857 VIL 859


>gi|146310301|ref|YP_001175375.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
 gi|167017282|sp|A4W6J4|MURC_ENT38 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145317177|gb|ABP59324.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
          Length = 491

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 137/408 (33%), Gaps = 51/408 (12%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +  A   +  P++     R+   + A  +  +H    +AV GT GK++  + V  I   
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIYAE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +GL    +      ++        +         ++       + +              
Sbjct: 144 AGLDPTFVNGGLVKAAGVHARLGHS------RYLIAEADESDASFL-------------- 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E++ R
Sbjct: 184 -HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPR 242

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALV 317
                 +  + G+ +   + ++       +   T++ + K+        PG     NA  
Sbjct: 243 VGR---QTTTYGFSEDADVRVESYTQTGAQGHFTLARQDKELLHVTLNAPGRHNALNAAA 299

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IYVDYAHTSNSL 369
           A  +    GI+   +L  LE       RF+F+G       N + G   +  DY H    +
Sbjct: 300 AVAVATEEGIEDDDILRALESFQGTGRRFDFLGEYPLEPVNGKSGTAMLVDDYGHHPTEV 359

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           +  +K  R       ++++F                  L   D  ++ D     E P   
Sbjct: 360 DATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLCQVDALLMLDVYAAGEMPIPG 419

Query: 426 ---EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                +   I   G    I   +  +A     ++L   D++++ G G+
Sbjct: 420 ADSRSLCRTIRGRGKVDPILVSDPAQAAEMLAQVLTGNDLILIQGAGN 467


>gi|154687119|ref|YP_001422280.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens
           FZB42]
 gi|166222954|sp|A7Z7S3|MURC_BACA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154352970|gb|ABS75049.1| MurC [Bacillus amyloliquefaciens FZB42]
          Length = 432

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 129/399 (32%), Gaps = 55/399 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S  + +  +    P++      KFL+ +  +         +AVTG  GK+S    +  
Sbjct: 71  PDSHPEIAKALAEGIPVI---RYHKFLAEYMKKY------TSVAVTGAHGKTSTTGLLAH 121

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + Q++  +SF IG  +   + + +      +  Y    LSY                   
Sbjct: 122 VMQQAKPTSFLIGDGTGRGNESSEY-FVFEACEYRRHFLSY------------------- 161

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSK 254
                  +      TN+  DH DY       F+A    F+ + L      I   DD Y  
Sbjct: 162 -------QPDYAIMTNIDFDHPDYFANIDDVFDA----FQNMALQVNKGIIACGDDEYLP 210

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVY 313
           ++     N        G +  F   + +          + V    +D F  P  G   V 
Sbjct: 211 KIHA---NVPVVYYGTGEENDFQ-ARNIVKNTEGTTFDVFVRNTFYDTFYIPAYGHHNVL 266

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L    LC    ID  ++   LE    V  RF      S+   +  DYAH    +++ +
Sbjct: 267 NSLAVIALCHYEEIDVNMIKLGLESFGGVKRRFNEKVIGSQ--VLIDDYAHHPTEIKVTI 324

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RA 430
           +  R       II VF                 +L  AD   + D      E+  K+   
Sbjct: 325 EAARQKYPEREIIAVFQPHTFTRTQSFLDEFAESLSAADRVYLCDIFGSARENVGKLTIT 384

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           ++   I           ++  A E      VL+  G G 
Sbjct: 385 DLQEKIANAELIEENDTSVLKAHEGA----VLIFMGAGD 419


>gi|52080122|ref|YP_078913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           licheniformis ATCC 14580]
 gi|52785496|ref|YP_091325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           licheniformis ATCC 14580]
 gi|319646103|ref|ZP_08000333.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           BT1B_CT2]
 gi|62900504|sp|Q65JY2|MURD_BACLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52003333|gb|AAU23275.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           licheniformis ATCC 14580]
 gi|52347998|gb|AAU40632.1| MurD [Bacillus licheniformis ATCC 14580]
 gi|317391853|gb|EFV72650.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           BT1B_CT2]
          Length = 451

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 143/415 (34%), Gaps = 58/415 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDF-SATIRSNTPILVVDNT--RKFLS---------LFASRLYG 111
             +G E +  S    L D  S  I    P +  +N    + L            A  L  
Sbjct: 53  AEKGVEVVCGSHPTELFDLHSIDILIKNPGIRYENVMVEEALKRGIPVWTEVELAYHLTD 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 + +TG++GK++  + V ++ +     +   G   T +S   +            
Sbjct: 113 ---APFIGITGSNGKTTTTTLVYEMLKADSKKALVAGNIGTAASEVANQAS--------- 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                    G   +  E SS  L        +   G   N+   H+DYH +++ Y  AK 
Sbjct: 161 ---------GDEWIVTELSSFQLM--GTYQFRPKIGLLLNVFDAHLDYHHSRKNYELAKQ 209

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +++     +   A++  DD     + + +               F   + +      +  
Sbjct: 210 QVYRNQ-SETDVAVVNLDDETVVRLAECSKAEKVY---------FSVRRTLERGACVKDG 259

Query: 292 TISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            I   G+    L    LPGE  + N L A  +    G+  A V + L     V  R ++V
Sbjct: 260 AIMFNGEPVMPLEDVVLPGEHNLENILAALCIVKTAGVSDAAVRKVLTSFTGVKHRMQYV 319

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T     R++ + +  +N L    K +        +++   G DR      +   ++   
Sbjct: 320 ATIKN--RLFYNDSKATNIL-ATKKALSAFQKP--VILLAGGLDRGNEFDELKPHMSFVK 374

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A +    +  P+ E   K+  E+  GI       N  +A   A  + ++ DV+++
Sbjct: 375 A-VITFGETAPKFE---KLAEEM--GIQQVKRVDNVEQAATAAFSLSDEGDVILL 423


>gi|213155698|ref|YP_002317743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|215484924|ref|YP_002327163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|301346529|ref|ZP_07227270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB056]
 gi|301512504|ref|ZP_07237741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB058]
 gi|301594847|ref|ZP_07239855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB059]
 gi|332851488|ref|ZP_08433485.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332866813|ref|ZP_08437217.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
 gi|226711875|sp|B7H1N2|MURD_ACIB3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711876|sp|B7I325|MURD_ACIB5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|213054858|gb|ACJ39760.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|213988566|gb|ACJ58865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|332729941|gb|EGJ61272.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332734421|gb|EGJ65541.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
          Length = 448

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 126/354 (35%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 106 PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 146

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 147 LLKDQP-ELLVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQ 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
                    +   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 204 G----AKKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDADGTLWLARG 255

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R E+V T   
Sbjct: 256 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKT-VH 314

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 315 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFGPLRSSIEKYAK 373

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+         +DV+++
Sbjct: 374 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|84495983|ref|ZP_00994837.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
 gi|84382751|gb|EAP98632.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
          Length = 488

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 140/417 (33%), Gaps = 46/417 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+SSA    +       +   +V+  ++   +         H    +AV G +GK++  
Sbjct: 83  VVISSAIPESNVELAAARDAGCVVLHRSQGLAATM-------HDSRPVAVAGANGKTTTT 135

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +    Q +                  D   +  S   L    +  +  G     VEA 
Sbjct: 136 SMLTVALQAA------------------DLDPSFASGGELTGQGTNAAWTGGDVFVVEAD 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                   + G        TN+  DH+D++ T      A    F + +  +   +  ADD
Sbjct: 178 ESDGS-FLVYG--PEVAIVTNVQPDHLDFYGTFDNVQRAYAS-FADSIRSDGLLVACADD 233

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPL 306
           + S  +   A   G RVL+ G+     + L    A       T ++   +G         
Sbjct: 234 SGSLFLASNAAIGGTRVLTYGFDDTADLTLADHRADDEGIGTTTTLRLPDGSTATMRLAT 293

Query: 307 PGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           PG     NA  A        G D+ALVLE L        RFE  G  + G  +  DYAH 
Sbjct: 294 PGAHNALNAAAAYLAATEGFGADAALVLEGLAGFDGARRRFEVRGDVA-GVTVVDDYAHN 352

Query: 366 SNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  +  +++    I     GR+ V F                  L  A   ++ D     
Sbjct: 353 AGKVAAVVRTAAEIAARRGGRLHVAFQPHLYSRTRDFAQGFATGLAPAHTVVLLDVYGAR 412

Query: 423 EDP-EKIRAEIIH-------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           E P E I +E+I        G       G          E+ ++ D+++  G G  T
Sbjct: 413 EQPMEGITSELIAAPLRDLPGERSVSVGGTFASVAAHLAEIASEGDIVLTVGAGDVT 469


>gi|71891930|ref|YP_277660.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|109892692|sp|Q493Q0|MURC_BLOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71796036|gb|AAZ40787.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 480

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 126/381 (33%), Gaps = 45/381 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH +    I   A  IVVSSA    +          I V+    + LS      +G    
Sbjct: 70  GHKY--SNINN-ANVIVVSSAIHPNNPEILAAKQARIPVIKRA-EMLSELMRFRHG---- 121

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A++GT GK++  + +  I   +GL    I      S         +           
Sbjct: 122 --IAISGTHGKTTTTTMIVNIYTAAGLDPTFINGGIVKSEGVHARLGYS----------- 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   ++ VEA       +    +  +    TN+  DHI  +Q    Y       F 
Sbjct: 169 -------RYLIVEAD---ESDNSFLHLHPMVEVITNIDTDHIHEYQGNFEYLKKAFIDFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    AI+  DD    E++ +      ++++ G+ +   +H+        K   T+S
Sbjct: 219 HNLPFYGYAIVCIDDPVICEILPKIKR---KIITYGFNKNANLHIFNYRQHIEKSSFTVS 275

Query: 295 -VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
                        PG     NA  A  +    GI   ++L+ +        RFE +G   
Sbjct: 276 RFNQTKLQVTLNAPGCHNALNATAAIAVATEEGISDKIILKTMLDFQGTHRRFENLGYYS 335

Query: 351 ---TNSRGGRI--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G I    DY H    L   +  IRT     R+++VF         +      
Sbjct: 336 LNKINDQTGEILLIDDYGHHPAELHATIVAIRTGWPDRRLVMVFQPHRYTRIKELYYDFI 395

Query: 405 IALDLADIAIVTDDNPRSEDP 425
             L   DI ++       E P
Sbjct: 396 DVLSNVDILLILHVYSAGEPP 416


>gi|70726733|ref|YP_253647.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus haemolyticus JCSC1435]
 gi|81174951|sp|Q4L5N4|MURD_STAHJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68447457|dbj|BAE05041.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           haemolyticus JCSC1435]
          Length = 449

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 44/351 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TGT+GK++ +S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAITGTNGKTTTSSLIGDMFKKSRLTGRLSGNIGYVASKVAQETSPN---EYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     GV            +Q+R           TN+   H+DYH+T + Y NAK +++
Sbjct: 168 SSFQLLGV------------EQYR-----PHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                K      Y    Y +  +  + N   + L    Q      ++V  I+ K    + 
Sbjct: 211 -----KNQTENDYLICNYHQRHLIESENLKAKTLYFSTQ------QEVDGIYIKDGFIVY 259

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +  +     LPGE  + N L A    I  G+    +++ L     +  R +++GTN 
Sbjct: 260 QGIRIINIDDLVLPGEHNLENILAAVLASILAGVPIKAIIDSLTTFSGIDHRLQYIGTNR 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                Y + +  +N+L      + +     + +    G DR      ++  +      + 
Sbjct: 320 TNK--YYNDSKATNTLATQF-ALNSFKQPIVWLC--GGLDRGNDFDELIPYMKNVRVMVV 374

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    +  EK            ++  +  +A++   +++   DV+++
Sbjct: 375 F-------GQTQEKFAKLGNSQGKLVVKATDIEDAVKKVQDVVEPNDVVLL 418


>gi|295111740|emb|CBL28490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synergistetes
           bacterium SGP1]
          Length = 458

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 133/355 (37%), Gaps = 47/355 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTG++GKS+V + +  +   +  +    G                     L +A S
Sbjct: 114 RLIGVTGSNGKSTVTALIGHMLNAAHRNVAVGG--------------------NLGRAAS 153

Query: 176 YLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + +    V +E SS  L+  H L          TNL  DH+++H + +AY  AK ++ 
Sbjct: 154 VFAGREFDAVVLELSSFQLEWTHTLSSC---VSIVTNLAPDHLNWHGSYEAYVAAKAKIL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               P     +   D    K           RV+++ ++ +  H         +++ T+ 
Sbjct: 211 SLRAPSGWGIVQDRDVEALKA------GGEERVITLSWEERPKHGMAGHIFMGEEEATLR 264

Query: 295 VEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + G+           L G   + N  ++      +G+D       L+    +P R E  G
Sbjct: 265 LNGEMTPLFRYSETTLLGAHNLENVAMSVAALRLLGLD-EDAKTLLKGFFPLPHRCERAG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T    G +YVD +  +N +   +  +  +   +++++ G G   D      + +  L  A
Sbjct: 324 TVD--GVLYVDDSKGTN-VAASVTAMTALPGRKVVILGGRGKGEDY---AALAEGVLREA 377

Query: 411 DIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D A++       E+ + I   +   G        +  +A+R A  +      +++
Sbjct: 378 DAAVLL-----GEERDAIAGALRGAGFTAVTLAQDMEDAVRKAQTLARPGMTVLL 427


>gi|294674970|ref|YP_003575586.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
 gi|294473470|gb|ADE82859.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
          Length = 443

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 131/364 (35%), Gaps = 44/364 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 94  EFAGRYTD---SKMICITGSNGKTTTTSLIYHIFKEAGYDAGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 --------SLALQVAEDPHEYYIIELSSFQLDN--MYDFRADIAILLNITPDHLDRYNFE 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLK 280
            Q Y +AKMR+ +    K++    +ADD   K  +++   H+       +  +G   +++
Sbjct: 190 MQNYVDAKMRIIQNQTDKDAFIY-WADDPIIKRELEKYDIHSIQYPFSELKEKGVIGYIE 248

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +      K +               L G+  +YN+L A       GI    + + L    
Sbjct: 249 EGKYKIEKPE-----PFNMEQESLSLTGKHNIYNSLAAGIAADIAGIKKEEIRKSLSDFP 303

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R E V T  RG +   D   T+  ++     +  + +  I+++   G D+     P
Sbjct: 304 GVEHRLEKVCT-VRGVQYINDSKATN--VDACWYALEAMKTKVILII--GGKDKGNDYEP 358

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           I   +    + I  +  DN +  D          GIP   +  +  E +    EM    +
Sbjct: 359 IKPLVKEKCSGIVYLGADNQKLHDNFDNL-----GIP-VRDTHSMKECMEACYEMAKPGE 412

Query: 461 VLVV 464
            +++
Sbjct: 413 TVLL 416


>gi|169797488|ref|YP_001715281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AYE]
 gi|169150415|emb|CAM88312.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii AYE]
          Length = 455

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 126/354 (35%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 113 PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 154 LLKDQP-ELLVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQ 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
                    +   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 211 G----AKKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDADGTLWLARG 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R E+V T   
Sbjct: 263 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKT-VH 321

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 322 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFGPLRSSIEKYAK 380

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+         +DV+++
Sbjct: 381 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|212709986|ref|ZP_03318114.1| hypothetical protein PROVALCAL_01037 [Providencia alcalifaciens DSM
           30120]
 gi|212687395|gb|EEB46923.1| hypothetical protein PROVALCAL_01037 [Providencia alcalifaciens DSM
           30120]
          Length = 447

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 120/371 (32%), Gaps = 41/371 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I Q  G     +     +      +     SP ++ +
Sbjct: 89  PERWVLAVAGTHGKTTTAGMLAWILQDCGYEPGFL--IGGVPGNFDVSSQIGKSPFFVIE 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D  +  +A       
Sbjct: 147 ADEYDCAFFDKRSKFVHYS------------PKTLILNNLEFDHADIFENLEAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P      + ++D+  K+VM            VG  G++     V   H+  Q  
Sbjct: 195 LV-RIVPSSGKIFMPSNDSNLKQVMNM--GCWSEQELVGENGEWHA---VKLNHDGSQFD 248

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + +   +  +   G   + N L+A      +G+ +      L+K      R E  G 
Sbjct: 249 VYYQQEKVGEVNWSQVGNHNIQNGLMAIAAAHHVGVPAKEACLALDKFINARRRLELRGV 308

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALD 408
            +    +Y D+AH   ++   L+ +R+   G  RII V          G        AL 
Sbjct: 309 ENE-VSVYDDFAHHPTAILATLEALRSKVGGTSRIIAVLEPRSNTMKMGISKNDIAPALG 367

Query: 409 LADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVV 464
            AD   +         P  I     EI             I+A+    IE     D ++V
Sbjct: 368 RADEVFLFQ-------PANIPWMVTEIAEHCVQPARWHADIDALANMVIETAQPGDHILV 420

Query: 465 AGKG-----HE 470
              G     HE
Sbjct: 421 MSNGGFGGIHE 431


>gi|145627891|ref|ZP_01783692.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145639341|ref|ZP_01794947.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|144979666|gb|EDJ89325.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145271644|gb|EDK11555.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|309751215|gb|ADO81199.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2866]
          Length = 475

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 128/375 (34%), Gaps = 39/375 (10%)

Query: 59  FIPQAIA--QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA      +  A+ +   P++      +   + A  +  +H 
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRHG 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I  ++ L    +      S+          +  YL   +
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL---I 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D ++       A    F
Sbjct: 172 AEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +             Q  +              + I 
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYIVIC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G    
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAIAKEEGIANEAILEALADFQGAGRRFDQLGEFIR 335

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +   R+  DY H    +++ +K  R      RI+++F                  L   
Sbjct: 336 PNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQV 395

Query: 411 DIAIVTDDNPRSEDP 425
           D  I+ D     E P
Sbjct: 396 DALIMLDVYAAGEAP 410


>gi|301300388|ref|ZP_07206590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851990|gb|EFK79672.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 437

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 18/262 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+   HIDYH T++ Y NAKMR+      ++   ++  D+   +E+ +R+  
Sbjct: 160 HPKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQT-EDDYFVVNWDNEEWQELSQRSKA 218

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +G      ++      + + ++    +         +PG   V NAL A  + 
Sbjct: 219 RIVPFSRLGKSKGGAYVADGYLFYKEDKIMPVDD-------IKVPGTHNVENALAAIAVA 271

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G  +  + E L     V  R ++V T   G + Y D   T+  +E   K +      
Sbjct: 272 KIFGKSNEDIKEVLTTFSGVRHRTQYVTT-LNGRKFYNDSKATN--MEATEKALAGF--N 326

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             +V+   G DR      +   +   +  + +  +    + D      +   G+   I+ 
Sbjct: 327 NPVVLLAGGLDRGFTFEKLEPSLKNKVHAMIVFGE----TADLMAKAGK-EAGVEKIIKT 381

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            + + A+  A ++ N+ DV+++
Sbjct: 382 KDAVSAVPEAYKVSNEGDVILL 403


>gi|24111536|ref|NP_706046.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           301]
 gi|30061658|ref|NP_835829.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|44888197|sp|Q83MF8|MURC_SHIFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24050295|gb|AAN41753.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30039900|gb|AAP15634.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|281599453|gb|ADA72437.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2002017]
 gi|313646526|gb|EFS10987.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|332762290|gb|EGJ92557.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2747-71]
 gi|332764937|gb|EGJ95165.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-671]
 gi|333022321|gb|EGK41559.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-304]
          Length = 491

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLLNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMCVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|325288828|ref|YP_004265009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964229|gb|ADY55008.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 454

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 126/348 (36%), Gaps = 34/348 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  + + ++ +++G  +   G   T  S   +   +             
Sbjct: 109 VVGITGSNGKTTTTTLIGELAKKTGRPAVVAGNIGTAISGKVEGLGSRG----------- 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     V A         +D +++      N+  DH+D H T + Y  AK R+FE 
Sbjct: 158 ---------IVVAELSSFQLELIDRLRVNIAVLINITPDHLDRHGTLENYAAAKARIFEN 208

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K+  A++  D    +E  K        + +       I L     + ++   T  + 
Sbjct: 209 QTGKD-LAVLSWDYPMVREYGKITQARVTYISTEELLADGIGLSGNDLVWSRDGKTTKII 267

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            ++      L G+  + N +    + + +G+    + E L     V  R E VG+     
Sbjct: 268 ARN---ELQLRGKHNLENVMCGIAVGLEMGLSGPQIAEVLRGFAPVAHRQEVVGSYDGIL 324

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I        +S    L++         IV+   G ++       + +    +  + +V 
Sbjct: 325 YINDSKGTNPDSAIKALQSYEE-----PIVLIAGGKNKGLDMTEFLEEAKKRVKSLVLVG 379

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++D E I      GI   I+  +  + +  AI    K DV+++
Sbjct: 380 K---AADDLEIIAK--KIGIKNIIKAVDFEDCVDKAIAEAAKGDVVLL 422


>gi|225630075|ref|YP_002726866.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia sp. wRi]
 gi|254766032|sp|C0R5N3|MURC_WOLWR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225592056|gb|ACN95075.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia sp. wRi]
          Length = 474

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 151/411 (36%), Gaps = 51/411 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +       N              + A  L  K+   ++AV+G+SGK+
Sbjct: 86  AQIVVHSSAIESDNVELVTARNNN----KTILHRSDILAELLRDKY---VIAVSGSSGKT 138

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   S + +  I     ++S+  ++R        L K+  +L     +  ++
Sbjct: 139 TTTAMIASIFDHSNIDATVI-VGGILNSYQSNSR--------LGKSDIFLIEADESDGTM 189

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         I       T++  DH+D++ T     +A    F + + K   AI+ 
Sbjct: 190 L------------KIPANITVITSINDDHMDHYGTFDDIKHA----FSQFINKADFAIL- 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306
                S  +   A N+       G++   I    +    N  +  + ++         L 
Sbjct: 233 ---PDSVGINYDASNSMM----FGFESGNIRASNIKQHANSIEFDVLIDNNHRIKNVVLS 285

Query: 307 --PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G  +V NAL A  + I +GI  A + + L +   V  RF  +  + +G ++  DYAH
Sbjct: 286 NTIGMHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLIA-DIKGVKLIEDYAH 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             N +   L   R+IT G++I +                     + D  I+T  +P  + 
Sbjct: 345 HPNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRIFMMFDYVILTPVHPPEDK 404

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           P      + I+  +I       +  N    I   I    +  D+++  G G
Sbjct: 405 PIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSDIVLFIGAG 455


>gi|153006720|ref|YP_001381045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152030293|gb|ABS28061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 461

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 118/363 (32%), Gaps = 41/363 (11%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVS     +L +      +  P+             A+R     P  I+A+TGT+G
Sbjct: 71  ADLVVVSPGVPMALAEVVRARAAGVPVWGE-------VELAARFLAGVP--IVAITGTNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  +    +  R   +         + +    + L       +   LS    +G    
Sbjct: 122 KSTTTALAGALFARHRRTF----TGGNLGTPLCQHVLDGGGAEVVVAELSSFQMEG---- 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                        L  ++    +  N+  DH+D ++    Y  AK RLF  L      A+
Sbjct: 174 -------------LLSLRPRVAAILNVTPDHLDRYRDVDDYAAAKARLF-GLQQPGDHAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFD--- 301
             A D  +  + + A  A       G  G       +        ++ +   G   +   
Sbjct: 220 ANARDPRALAMAE-ASRAVLHTFGFGPPGPGARDPGLEPDEGGATELWVQARGGGPERFR 278

Query: 302 -FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G     NA+ A      +G+    V   L+    +P R E VG       +  
Sbjct: 279 LANRALRGRHNRENAMAAVLCARLLGVPGGEVQAGLDAFGGLPHRLEVVGERGGIEWVND 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   +S  + L      T+   +V+   G  +     P+    A  +  +  + +D P
Sbjct: 339 SKATNVDSTLVGLSAFPAGTA--RVVLVMGGRGKGAPYAPLRPLFAGRVKALLTIGEDAP 396

Query: 421 RSE 423
             E
Sbjct: 397 AVE 399


>gi|319953741|ref|YP_004165008.1| udp-n-acetylmuramate--l-alanine ligase [Cellulophaga algicola DSM
           14237]
 gi|319422401|gb|ADV49510.1| UDP-N-acetylmuramate--L-alanine ligase [Cellulophaga algicola DSM
           14237]
          Length = 452

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 113/361 (31%), Gaps = 50/361 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ +S +  I + + L       T+ +   ++D               S  
Sbjct: 117 LAVAGTHGKTTTSSILAHILKEAQLPM-----TAFLGGISEDFG-------------SNF 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG     VEA        RL          T++  DH+D + T +    +  R F   
Sbjct: 159 YFQGSEFSVVEADEFDRSFLRLS---PDIACITSMDADHLDIYGTGEELHKS-FRAFAAR 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
           L       +                     ++ G +       K +  I       +   
Sbjct: 215 LKVGGKLFVRN-------------GLPIEGITYGIEDDSDYCAKNIEIIKGVYVFELQTP 261

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +    F  PG   + NA+VA G+ +        +   LE    V  RF +    +  
Sbjct: 262 TVLYKGIRFKKPGRHNLLNAIVALGMALEANAKPEKLFSALESFKGVQRRFSY-RIKNDD 320

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH    +  + + I     + +++ VF                 +L      +
Sbjct: 321 FVFIDDYAHHPTEINAVFEAITEMHPNKKVLAVFQPHLFSRTRDFAEDFAESLSKFANVL 380

Query: 415 VTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + D  P  E P +      +  +I       ++K   I  I+         +VL+V G G
Sbjct: 381 LLDIYPAREKPMEGITSEWLLQKINSQNKKLVQKSELITEIQK-----QAPEVLIVMGAG 435

Query: 469 H 469
            
Sbjct: 436 D 436


>gi|303242546|ref|ZP_07329024.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302589908|gb|EFL59678.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 464

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 122/360 (33%), Gaps = 51/360 (14%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I AVTG+ GK++  + +  +    G + +  G   T                     
Sbjct: 116 PAQIFAVTGSDGKTTTTTLIYNMLTAQGYNCWLGGNIGT-------------------PL 156

Query: 174 LSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           LS +     T   V E SS  L    L          TNL  +H+D H++   Y  AK  
Sbjct: 157 LSKIDEIKETDKVVLELSSFQLHTMTLS---PNVAVVTNLAPNHLDMHKSMDEYIEAKKN 213

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +F     K    I+  D+  ++E  K           V         K         ++ 
Sbjct: 214 IFLHQ-SKSDKVILNFDNDITREFSKDVKGNVVYFSRVN--------KIDSGAKMDGEML 264

Query: 293 ISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +GKD   +       +PG   + N L A    I   ++   +         V  R E
Sbjct: 265 VYSDGKDIREIVNSGDIVIPGVHNIENYLAAIAAVIDY-VEIDTIKRVATTFKGVEHRIE 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-A 406
            V     G + Y D   +S S     + I  + S +  V+   GG   +    +MG++  
Sbjct: 324 LV-RELDGIKFYNDSIASSPS-----RTIAGLNSFKQKVILIAGGYDKKIPYDVMGEVLV 377

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVL 462
             +  + +V    P+ E    +  E+     G     I+     EA++ A E     D++
Sbjct: 378 NKVKCLVLVGQTAPKIEK--ALLDEVQRTGNGKDINVIKCSTLKEAVQKAYEFAKSGDII 435


>gi|58698887|ref|ZP_00373754.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534596|gb|EAL58728.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 462

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 151/411 (36%), Gaps = 51/411 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +       N              + A  L  K+   ++AV+G+SGK+
Sbjct: 74  AQIVVHSSAIESDNVELVTARNNN----KTILHRSDILAELLRDKY---VIAVSGSSGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   S + +  I     ++S+  ++R        L K+  +L     +  ++
Sbjct: 127 TTTAMIASIFDHSNIDATVI-VGGILNSYQSNSR--------LGKSDIFLIEADESDGTM 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         I       T++  DH+D++ T     +A    F + + K   AI+ 
Sbjct: 178 L------------KIPANITVITSINDDHMDHYGTFDDIKHA----FSQFINKADFAIL- 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306
                S  +   A N+       G++   I    +    N  +  + ++         L 
Sbjct: 221 ---PDSVGINYDASNSMM----FGFESGNIRASNIKQHANSIEFDVLIDNNHRIKNVVLS 273

Query: 307 --PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G  +V NAL A  + I +GI  A + + L +   V  RF  +  + +G ++  DYAH
Sbjct: 274 NTIGMHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLIA-DIKGVKLIEDYAH 332

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             N +   L   R+IT G++I +                     + D  I+T  +P  + 
Sbjct: 333 HPNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRIFMMFDYVILTPVHPPEDK 392

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           P      + I+  +I       +  N    I   I    +  D+++  G G
Sbjct: 393 PIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSDIVLFIGAG 443


>gi|300726291|ref|ZP_07059744.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bryantii B14]
 gi|299776488|gb|EFI73045.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bryantii B14]
          Length = 458

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 138/408 (33%), Gaps = 48/408 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ + A                 VV    + L        G      L   GT GK++ +
Sbjct: 75  VIYTPAIPASHKELLYFQENGFEVVKRA-QVLGTLTRTHKG------LCFAGTHGKTTTS 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    I  +S L          +   +++               +Y+ S    +V +EA 
Sbjct: 128 TMCAHIMHQSHLDCNAF-----LGGISKNYGT------------NYILSDKSDYVVIEAD 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H L   +      T+   DH+D + T++AY  +  R + EL+      II    
Sbjct: 171 EFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTELIQDGGALII---- 222

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
            ++   +K   +   +  +        H + +   + +    +    ++        P  
Sbjct: 223 -HTNLEVKPNVSDKVKTFTYSRDEGDFHAENININNGEITFDLVSPIENVKGIQLGQPIP 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N++ A  +    G  +  +   ++    V  RF+F   N++      DY H    +
Sbjct: 282 INIENSIAAMAMAQLNGCTAEELKYGMQTYTGVDRRFDFKIKNNKH-VFLSDYGHHPKEV 340

Query: 370 EMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
               K+++ +   R I  +F                 AL L D  ++T+  P  E+P   
Sbjct: 341 MQSAKSLKELYPNRKITAMFQPHLYTRTRDFYKDFAEALSLFDEVVLTEIYPAREEPIPG 400

Query: 426 ---EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              + I   +  GI    I K + ++ ++         DVLVV G G+
Sbjct: 401 VTSKLIYDNLKEGIEKDMILKDDVLDYVKN-----RDFDVLVVLGAGN 443


>gi|182414445|ref|YP_001819511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
 gi|177841659|gb|ACB75911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
          Length = 472

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 138/476 (28%), Gaps = 74/476 (15%)

Query: 25  WRERKINEV---SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           W  + ++ +   + DSR ++ G +FVAI   + DGH            A   + A +   
Sbjct: 17  WTAQPVSSLLAFAIDSRQLRRGDVFVAIKSEQRDGHA--------FLGAAEAAGASAALV 68

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---------- 131
            +       P LVV +  +     A          ++ ++G++GK+S  +          
Sbjct: 69  STPDPALALPQLVVADPLRAFQAIAREHRRLFRGPVVGISGSAGKTSTKNLLALLLETAA 128

Query: 132 -----FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                   Q+    G  +  +G   T+                    L   +      V 
Sbjct: 129 ASSDAHAGQVLATEGNLNNHLGVPLTL-------------------TLLDPAVHRFAVVE 169

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              S+ G      + I+      T +   H +           K  L   + P       
Sbjct: 170 AGISAPGEMAPLAEMIQPDVALITLVAAAHTEELGGLAGVAKEKAVLPAAVPPTGIAIFP 229

Query: 247 --YADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
               + A  +E+ +++       V+      +      V        V ++        F
Sbjct: 230 KHCTEFAAFRELDVQQMVVERADVIRPAQPPRDKVFFTVSHRDEHTVVALAYGPPPPLTF 289

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                 +    NA +A    + +G+ +  + + L +      R E    N R       Y
Sbjct: 290 TLRRVSDGMAQNAALAICAALWLGVPAESIQQRLAQWQPAKLRGELRRENGR-WLYLDCY 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG------KRPIMGKIALDLADIAIVT 416
                S+   L+    +       +F  GG  + G         +   + L   D A+V 
Sbjct: 349 NANPASMTDALEAFYGMAPTAEPRLFVLGGMEELGREAAGYHHELGRALRLRAGDQAVVI 408

Query: 417 DDNP------------------RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            ++                    +E  E I  ++         KG+R  A+   + 
Sbjct: 409 GEHAPAVRAGALAAGTAPDQVRVAESLEPIAVQVAAWRGAVFVKGSRRYALEKVLA 464


>gi|325957331|ref|YP_004292743.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           30SC]
 gi|325333896|gb|ADZ07804.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           30SC]
          Length = 437

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 111/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +++ IG                P   +        
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTTYLIG---------DGRGKGVPDSRFFV------ 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 + + E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 155 ------YEADEYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G+          +       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFNDTDDFQATDIKKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  + N+     +     +    + + L        RF     +   
Sbjct: 255 GKDLGEFEIHLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      + I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTK-----NKNSVIVFMGAGD 425


>gi|256820919|ref|YP_003142198.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga ochracea DSM
           7271]
 gi|256582502|gb|ACU93637.1| UDP-N-acetylmuramate/alanine ligase [Capnocytophaga ochracea DSM
           7271]
          Length = 450

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 105/320 (32%), Gaps = 40/320 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ +S +  +   +G         +++S+F         S          L
Sbjct: 115 LAVAGTHGKTTTSSILAHLLVEAG---------ASVSAFLGGIAENFNS---------NL 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  +   EA        RL          T++  DH+D +  ++           ++
Sbjct: 157 VLKGSEYTVAEADEFDRSFLRLS---PNIACITSMDADHLDIYGDKEHLIEGFREFAGKI 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
            P  S  +    D   +              + G +       + +   +         +
Sbjct: 214 KPGGSLIVRNGLDIEGE--------------TYGLEDNADYTFQNITVKNGIYHFDFHYK 259

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G  + D+    PG   + NAL A  + +  G     +L HL     V  RF ++      
Sbjct: 260 GGVYKDYTLLKPGRHNLLNALAAVSMAVKAGFAPEKLLPHLATFKGVKRRFSYI-IKEDN 318

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH  + +  + + +  +       +VF                 +L   D  +
Sbjct: 319 FAFIDDYAHHPSEINALFQAVEEMYPHTPKTIVFQPHLFTRTRDFLDDFAKSLSQFDDVV 378

Query: 415 VTDDNPRSEDP-EKIRAEII 433
           + D  P  E P E I ++++
Sbjct: 379 LLDIYPARELPIEGITSQVL 398


>gi|123441033|ref|YP_001005022.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166224749|sp|A1JJJ4|MURC_YERE8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122087994|emb|CAL10782.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 491

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 139/423 (32%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  ++         
Sbjct: 231 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G   
Sbjct: 288 APGRHNALNAAAAVAVATEEGIEDNDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI++VF                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQVDVLLML 407

Query: 417 DDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D     E P            IR     G    I   +         ++LN  D+++V G
Sbjct: 408 DVYAAGEPPIPGADSRSLCRTIRN---RGKLDPILVSDSETVPEVLAQVLNGDDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|331701059|ref|YP_004398018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128402|gb|AEB72955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 459

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 136/389 (34%), Gaps = 46/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y     +A +  + PI+            AS++       I+ VTG++GK++  + + +
Sbjct: 83  PYDNAVVAAAVDHHLPIITE-------VELASQITD---AEIIGVTGSNGKTTTVTMITE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I  +   +         I   A +      +   +   LS     G              
Sbjct: 133 ILNQE-RAKGHAYAAGNIGISATETAKKATADDTIVMELSSFMLLG-------------- 177

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +  +       TN+  +H+DYH+T++ Y NAKMR+     P++   + +  D +   
Sbjct: 178 ---IKTLHPHVAVLTNIFSNHLDYHKTRENYVNAKMRITMNQTPEDFFVVNFDSDEWRGL 234

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             + A        +          +K   ++   +  ++ E         +PG+  V NA
Sbjct: 235 SKRSAAKVVPFARTTEIDKGAY--EKNGKLYYNDEFIMNAED------IKVPGKQNVENA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A      +G  +  +   LE    V  R +FV   + G + Y D   T   +E     
Sbjct: 287 LAAIACAKVLGKSNLAITNVLETFTGVRHRLQFV-LEANGRKFYNDSKAT--DIEATQMA 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +        +V+   G DR      ++ +    +    +  +     ED  K       G
Sbjct: 344 LEGFDKP--VVLLAGGLDRGYTFDKLIPQFKEHVKAAVLFGETADLLEDSLK-----KAG 396

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I    +  N  EA+  A    ++ D++++
Sbjct: 397 IQNIQKVDNIDEAVPAAYSFSDEGDIVLL 425


>gi|224826076|ref|ZP_03699179.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
 gi|224601713|gb|EEG07893.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
          Length = 455

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 92/420 (21%), Positives = 153/420 (36%), Gaps = 52/420 (12%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           VA+     D   F       GAE +VVS   ++   +          VV +   F    A
Sbjct: 53  VALKTGAFDATTFA------GAEMLVVSPGVAVATPAIAAFRRAGGEVVGDVELFARAIA 106

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     ++A+TG++GKS+V S V  +C+++GL +   G                  
Sbjct: 107 G-----SGSKVIAITGSNGKSTVTSLVGHLCRQAGLDTVLAGNIGL-------------- 147

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
           P+  A      S +      +E SS  L+      +   A +  N+  DH+D +     Y
Sbjct: 148 PVLDALGEREASGKRPDVWVLELSSFQLE--TTTSLNADAATVLNISEDHLDRYADLLDY 205

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            ++K  +F          ++  DDA  + +++  H      L    +     L++    +
Sbjct: 206 AHSKTAVFNG----RGVQVLNRDDALVRAMVRPGHAQRWFSL---KETADYALRQDAGRY 258

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +T++ E         L G     NAL A  L  AIG+  A +LE L+    +  R 
Sbjct: 259 W---LTVAGEAVFDCAEMSLQGLHNAANALAALALTEAIGLPRAALLEGLKTFTGLAHRV 315

Query: 347 EFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           EFV     G R   D       + E  L  +         VV   GGD        +   
Sbjct: 316 EFV-AEVHGVRYIDDSKGTNVGATEAALNGM------TRPVVLIAGGDGKGQDFSPLKPA 368

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +A   ++        D  KIRA ++ G+P   ++     EA R A  +    DV+++
Sbjct: 369 CARIARAVLLI-----GRDAGKIRA-VLEGLPLPIVDCATLEEATREAARLAEAGDVVLL 422


>gi|110804155|ref|YP_687675.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 5 str.
           8401]
 gi|123343170|sp|Q0T8A6|MURC_SHIF8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110613703|gb|ABF02370.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|332762093|gb|EGJ92362.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 4343-70]
 gi|333009336|gb|EGK28792.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-218]
 gi|333010587|gb|EGK30020.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri VA-6]
 gi|333011479|gb|EGK30893.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-272]
 gi|333021722|gb|EGK40971.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-227]
          Length = 491

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLLNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|326560733|gb|EGE11101.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 46P47B1]
          Length = 460

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 117/360 (32%), Gaps = 24/360 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++LAV GT GK++  + +  I Q SG+ +   IG    +++  +   L      YL K 
Sbjct: 103 RHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGKQ 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V       S+    + +    +       NL  DH D      A    +   
Sbjct: 163 F------FVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAI-QTQFHH 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++P +   II AD    +  + +       V+     G      K+ A ++     +
Sbjct: 216 MIRMIPSKGQIIIPADTPSLETTLNK--GVWTTVVRTSLNGDAEWQAKLDA-NDGSSFWV 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + + G   V NAL A      +G+   +    L     +  R E +G + 
Sbjct: 273 HHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG-DV 331

Query: 354 RGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
               ++ D+AH   ++   L    + +   RI  +          G        +  +AD
Sbjct: 332 DDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAAIAD 391

Query: 412 IAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I         +P+ +     E+I   P  +   +    I          D +++   G
Sbjct: 392 QVI-------WYEPQGLSWGLKEVIGSTPNQLVLDSINAIIEHIKTYAKAGDAIIIMSNG 444


>gi|313890708|ref|ZP_07824333.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120809|gb|EFR43923.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 461

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 146/429 (34%), Gaps = 65/429 (15%)

Query: 55  DGHLF----IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---- 103
           DG  F      QA+   G + +  S   +L D    +    P +   N    K L+    
Sbjct: 48  DGKAFEENPAAQALLELGIKVVCGSHPLALLDEDFELMIKNPGIPYSNPMVEKALAKGIP 107

Query: 104 -----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A  +       I+A+TG++GK++  + +  +    G S+   G     +S   
Sbjct: 108 VLTEVELAYLVSE---APIIAITGSNGKTTTTTMIADVLNHGGQSALLSGNIGYPASEVV 164

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                             L ++    + +E SS  L    +D         TNL   HID
Sbjct: 165 ------------------LKAEPKDRLVMELSSFQLM--GVDAFHPHIALITNLIPTHID 204

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH + + Y  AK  + ++ +  E   I+ AD   ++ +  +         +         
Sbjct: 205 YHGSLENYVAAKWNI-QQRMTNEDYVILNADQELTRVLASKTQAKVLYFST--------- 254

Query: 279 LKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            KK       Q   +   G+         +PG   V NAL    +     I + ++++ L
Sbjct: 255 -KKEVEGAYLQGDKLYYNGEFIMEASSIGVPGLHNVENALATIVVAKLSNIANHVIVDTL 313

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           +    V  R ++ G        + + + ++N L    K +       +I++   G DR  
Sbjct: 314 KHFGGVKHRLQYAGQLHD--ITFYNDSKSTNIL-ACQKALSGFDKENLILI-AGGLDRGN 369

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               ++  I      I I        E   K+  A    G+       +  EA R A + 
Sbjct: 370 SFDELVPDIKGIKKMILI-------GETAGKMELAADTAGV-SHSNAKDVAEATRIAFKE 421

Query: 456 LNKQDVLVV 464
               D++++
Sbjct: 422 ALAGDIILL 430


>gi|167630126|ref|YP_001680625.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167592866|gb|ABZ84614.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 465

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 122/367 (33%), Gaps = 45/367 (12%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  I + +G + F  G                       + L   + +      V A 
Sbjct: 126 SLVGAILKAAGRNPFVGGNIG--------------------QPLVEEAQRLTADRWVVAE 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                    D     A    N+  DH+D H   + Y   K R+F     ++   ++  DD
Sbjct: 166 VSSFQLETTDQFHPRASLILNITPDHLDRHGDMENYRAIKARIFRNQGSED-ITVLNYDD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPL 306
              + +   A +   RVL      K  H   V        +  +    D          +
Sbjct: 225 PLVRTL---AADCRSRVLFFSRLQKMEHGAYVD----GGMIRFAGPEGDMAVAAVDRLQI 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V NAL A  L + +GI  A+V + +     V  R E VGT      +        
Sbjct: 278 KGAHNVENALAACALTVGLGIAPAVVAQAMIDFQPVEHRMEPVGTVEGVAYVNDSKGTNP 337

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +     +K I +      +++   G ++      +   I   +  + +V    P  E   
Sbjct: 338 D---ASIKAIESYDRP--VILIAGGKNKGSDFSELAEIIKKRVKAVVLVGQAAPVLE--- 389

Query: 427 KIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
              A +       I+  +  +A +  A +M    DV++++     ++ +  N E +  V 
Sbjct: 390 ---AALRKAGVEAIKLVDTFDATVLEAAQMAEPGDVVLLS-PACASLDMFPNYEVRGQVF 445

Query: 486 CDIIREI 492
            D++R++
Sbjct: 446 KDLVRQL 452


>gi|56419653|ref|YP_146971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           kaustophilus HTA426]
 gi|62900465|sp|Q5L0X7|MURD_GEOKA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56379495|dbj|BAD75403.1| UDP-N-acetylmuramoylalanine D-glutamate ligase (D-glutamic acid
           adding enzyme) [Geobacillus kaustophilus HTA426]
          Length = 451

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 119/348 (34%), Gaps = 40/348 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++  + + ++ +  G      G    ++    +         +L   LS  
Sbjct: 115 IGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGLVA---CEVAREAKPGQWLVTELSSF 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G                 +D  +       N+   H+DYH T++AY  AK  +F   
Sbjct: 172 QLAG-----------------IDKFRPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQ 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A++ ADD     +     +      +    G+  +++      N   V    + 
Sbjct: 215 T-ERDYAVVNADDPLVMNIASSVRSQKVLFSATKLLGEGAYVQDGAIYWNGDPVIRIAD- 272

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG+  + N L A       G     + + L     V  R ++V     G R
Sbjct: 273 ------IVLPGQHNLENILAAVAAAKLAGASDEAIRQVLATFSGVKHRLQYV-AEIDGRR 325

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y D   T+  +    K +     G  +++   G DR      ++  +    A +     
Sbjct: 326 FYNDSKATN--ILATQKALSAFA-GEPVILLAGGLDRGNEFDDLLPYLQQVKAVVLF--- 379

Query: 418 DNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  +KI R     GI       N  +A+  A E+    DV+++
Sbjct: 380 ----GQTADKIGRIAQKAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|153837900|ref|ZP_01990567.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ3810]
 gi|149748678|gb|EDM59529.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ3810]
          Length = 452

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 124/359 (34%), Gaps = 27/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R      +     + G+    +    + +  +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQALADVLERGCWTERQ-----FSGEDGDWQAHKLVLDGSKFE 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++++G+      + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VALQGEKVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
             +G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 E-QGITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      + I  +     P F++  +    +   +E     D ++V   G
Sbjct: 380 ADEVFLFQPDNIEWSVQDIAEQCKQ--PAFVD-ADMDNFVAKIVERAQPGDQILVMSNG 435


>gi|297530715|ref|YP_003671990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
 gi|297253967|gb|ADI27413.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
          Length = 451

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 119/348 (34%), Gaps = 40/348 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++  + + ++ +  G      G    ++    +         +L   LS  
Sbjct: 115 IGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGLVA---CEVAREAKPGQWLVTELSSF 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G                 +D  +       N+   H+DYH T++AY  AK  +F   
Sbjct: 172 QLAG-----------------IDKFRPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQ 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A++ ADD     +     +      +    G+  +++      N   V    + 
Sbjct: 215 T-ERDYAVVNADDPLVMNIASSVRSQKVLFSATKLLGEGAYVQDGAIYWNGDPVIRIAD- 272

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG+  + N L A       G     + + L     V  R ++V     G R
Sbjct: 273 ------IVLPGQHNLENILAAVAAAKLAGASDEAIRQVLATFSGVKHRLQYV-AEIDGRR 325

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y D   T+  +    K +     G  +++   G DR      ++  +    A +     
Sbjct: 326 FYNDSKATN--ILATQKALSAFA-GEPVILLAGGLDRGNEFDDLLPYLQQVKAVVLF--- 379

Query: 418 DNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  +KI R     GI       N  +A+  A E+    DV+++
Sbjct: 380 ----GQTADKIGRIAQKAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|261419315|ref|YP_003252997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. Y412MC61]
 gi|319766131|ref|YP_004131632.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
 gi|261375772|gb|ACX78515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC61]
 gi|317110997|gb|ADU93489.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
          Length = 451

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 119/348 (34%), Gaps = 40/348 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++  + + ++ +  G      G    ++    +         +L   LS  
Sbjct: 115 IGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGLVA---CEVAREAKPGQWLVTELSSF 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G                 +D  +       N+   H+DYH T++AY  AK  +F   
Sbjct: 172 QLAG-----------------IDKFRPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQ 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A++ ADD     +     +      +    G+  +++      N   V    + 
Sbjct: 215 T-ERDYAVVNADDPLVMNIASSVRSQKVLFSATKLLGEGAYVQDGAIYWNGDPVIRIAD- 272

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG+  + N L A       G     + + L     V  R ++V     G R
Sbjct: 273 ------IVLPGQHNLENILAAMAAAKLAGASDEAIRQVLATFSGVKHRLQYV-AEIDGRR 325

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y D   T+  +    K +     G  +++   G DR      ++  +    A +     
Sbjct: 326 FYNDSKATN--ILATQKALSAFA-GEPVILLAGGLDRGNEFDDLLPYLQQVKAVVLF--- 379

Query: 418 DNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  +KI R     GI       N  +A+  A E+    DV+++
Sbjct: 380 ----GQTADKIGRIAQKAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|116074302|ref|ZP_01471564.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp.
           RS9916]
 gi|116069607|gb|EAU75359.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp.
           RS9916]
          Length = 483

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 127/425 (29%), Gaps = 62/425 (14%)

Query: 68  AEA--IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           A A  +VVSSA      +  A       +L   +    L         + P   +AV G+
Sbjct: 73  AAAPQVVVSSAIPEHNPELKAAREQGLTVLHRSDVLAAL-------IDEQPA--IAVAGS 123

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++ ++ +  +   +G       PT+ I                              
Sbjct: 124 HGKTTTSTVITTLLAAAGED-----PTAVIGGVVPCYGSNG----------------HAG 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +  +        L       G  TNL  DH D++              +      + 
Sbjct: 163 EGRLLVAEADESDGSLVKFAAHLGVITNLELDHTDHYADLNDLIGT----LKRFGNGCTH 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDF 302
            +   DD     +++    A         +G       V    +  +      G+     
Sbjct: 219 LLANHDDP----ILREHFQAQAWWSVSSAEGVDFAALPVTLEGDHTEADFYERGRLIGRI 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG   + NA  A   C   GI  A + + L +L     RF+F G +  G  I  DY
Sbjct: 275 SLPMPGLHNLSNATAALAACRMEGIPFAHLQDGLSQLSPPGRRFDFRG-DWEGRLIVDDY 333

Query: 363 AHTSNSLEMILKNIRTI----------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           AH  + +   L   + +             R++VVF         +       AL  AD 
Sbjct: 334 AHHPSEVRATLDMAQLMLSSGRSPLPQPPERLLVVFQPHRYSRTQEFLDDFARALSSADS 393

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR------TAI--EMLNKQDVLVV 464
            I+       E P         G        +R   +       TA+  E    QD+++ 
Sbjct: 394 VILAPIYAAGEAPIDGVNSHTLGDALQRLIPDRSVLVANSMDQLTALVQEHSRPQDLVLA 453

Query: 465 AGKGH 469
            G G 
Sbjct: 454 MGAGD 458


>gi|313200239|ref|YP_004038897.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Methylovorus sp.
           MP688]
 gi|312439555|gb|ADQ83661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           MP688]
          Length = 460

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 142/405 (35%), Gaps = 45/405 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+    + +V+S   +L +          I VV +   F        +      ++A+T
Sbjct: 63  SAMFNAVDLVVISPGVALAEPEVQQALANGIQVVGDVELFAQ------FRPRSSKVIAIT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G +GK++V + V ++C+ +GL +   G                     +  AL  + + G
Sbjct: 117 GANGKTTVTTLVGEMCKAAGLKTVVAGNIGLP----------------VLDALRQVETDG 160

Query: 182 V-THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +E SS  L+      +   A +  N+  DH+D +     Y  AK R+    L  
Sbjct: 161 APDVYVLELSSFQLE--TTSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARI----LKG 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKD 299
               ++  +DA+ + +          V++ G       H   + A+H++  +        
Sbjct: 215 AGVQVLNREDAWCRNMAL----PDQPVVTFGLDLPVESHAYGLLALHDQLWLAQGAHPIL 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG     NAL A  LC AIG+D A +   L +   +P R E+V  +      Y
Sbjct: 271 HVEELRIPGLHNAANALAALALCRAIGVDWAPLQHVLREFKGLPHRVEWV-ADLHDIAFY 329

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            D   T+            +      VV   GGD        + +     A   ++    
Sbjct: 330 DDSKGTNVG-----ATCAALAGLPRKVVLIAGGDGKGQDFSPLREPVDQNARAVVLI--- 381

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               D   I A +       +   +  EA++ A       D +++
Sbjct: 382 --GRDAALIEAALQGSPVPRLHAASLEEAVQQAYAAATPGDAVLL 424


>gi|255010090|ref|ZP_05282216.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fragilis
           3_1_12]
 gi|313147885|ref|ZP_07810078.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides fragilis 3_1_12]
 gi|313136652|gb|EFR54012.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides fragilis 3_1_12]
          Length = 464

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 140/419 (33%), Gaps = 47/419 (11%)

Query: 60  IPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           IP A    A   +V++ A   +    T   +         +K   +  +     H    L
Sbjct: 63  IPDACKDPATTLVVLTPAVPQEHAELTYFRDNGF----EIQKRAQVLGTI---THSSKGL 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT GK++ ++    +   S      IG T+ +   +++               + L 
Sbjct: 116 CVAGTHGKTTTSTMTAHLLHHS-----HIGCTAFLGGISKNYGT------------NLLL 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S    +  +EA       H L          T    DH+D + T+QAY  +    +  L+
Sbjct: 159 SPSSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTEQAYLES-FEHYTTLI 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 II    +   +V +     G ++ +        H + +   + +  +       
Sbjct: 215 QPGGALIIREGISLQPKVQE-----GVKIYTYSRDKGDFHAENIRIGNGEIFIDFIGPDI 269

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             D     +P    + N + A  L    G+ +  + + +     V  RF+F   N +   
Sbjct: 270 RIDNIQLGVPVSINIENGVAAMALAYLNGVTAEEIKQGMASFRGVDRRFDFKIKNDQ-IV 328

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DYAH  + ++  + ++R      +I  VF                 +L L D  I+ 
Sbjct: 329 FLSDYAHHPSEIKQSVMSMRELYRDKKITAVFQPHLYTRTRDFYKDFADSLSLLDEVILV 388

Query: 417 DDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D  P  E P      + I   +  GI   + K    E I   ++     +VL+  G G 
Sbjct: 389 DIYPAREQPIPGVTSQLIYDNLRPGIEKSMCK---KEEILDVLKT-KHIEVLITLGAGD 443


>gi|302036130|ref|YP_003796452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
 gi|300604194|emb|CBK40526.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
          Length = 462

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 140/413 (33%), Gaps = 42/413 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  +   A+  GA+ +V+S        +        + V+          ASR       
Sbjct: 59  GAQY-ESALE-GADLVVISPGVPTHLDALNRVRARGVRVIGEL-----ELASRFL---TA 108

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTGT+GKS+  + + +  Q SG  +F  G     +S               +    
Sbjct: 109 PVVAVTGTNGKSTTVTLIGKFLQESGKRAFVGGNLGIAAS----------EAALTSVQAK 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S+    +V +E SS  L+    +       +  N+  DH+D + + + Y  AK  +F 
Sbjct: 159 AGSAAPYEYVVLEVSSFQLE--TTEQFHPWIAAILNVTLDHMDRYASVEDYVAAKATIFA 216

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +  ++   DDA    +  R       VL     G  +       + +   +  +V
Sbjct: 217 NQTAGD-YSLFNLDDARVAALRGRTKGT---VLGFSRSGATVSGVAGATVLDGDLIVTTV 272

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            G+  +        L G   V N + A    +  G     V   L     +    E V  
Sbjct: 273 RGRREEICRRSDMRLIGLHNVENVMAAVTYGLLCGCSIEAVRAVLRSFPGLEHALE-VVR 331

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             RG R   D   T+  ++ +LK +  I     ++    G D+      +   I   +  
Sbjct: 332 ERRGVRFVNDSKGTN--VDAVLKALEGIDQPIWLI--AGGRDKGGDFSRLERAIRERVKG 387

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++       E   +I+A +              +A+  A       +V+++
Sbjct: 388 LILI------GEAAGRIQAAMGD-FDRCRPAATLRDAVELAAREAQPGEVVLL 433


>gi|296269384|ref|YP_003652016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
 gi|296092171|gb|ADG88123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
          Length = 462

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 141/440 (32%), Gaps = 60/440 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V S  +          +   I V+          A RL G      LA+TGT+GK
Sbjct: 66  GASLVVTSPGWRPDHPLLAAAAAAGIEVIGEV-----ELAWRLRGDGAAPWLALTGTNGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +   +GL +  +G                         +     +    ++
Sbjct: 121 TTAVRMLTSMLTAAGLKALAVGNVGV--------------------PIVEAVREPYDVLA 160

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS  L  H   GI  +A +  N+  DHID+H + + Y  AK ++F          I 
Sbjct: 161 VELSSFQL--HWSSGIAPLAAAVLNVAPDHIDWHGSLEEYAAAKAKIFRN----APTVIY 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD     + +    AG RV+             V       +  +       + L  L
Sbjct: 215 NADDERCARLAEPYRAAGRRVVGFTLGAPRPGQLGVVEDLLVDRAFVPDPRHTAEELATL 274

Query: 307 PG-----EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                     V NAL AA L  A G+ +  V   L +    P R   V        +   
Sbjct: 275 ADVRPLAPHNVANALAAAALARAHGVPTGAVRRGLAEFVPDPHRIAHVARIGDVDYVDDS 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A   ++    L   R++           G  +      ++ + A  L  + ++  D  R
Sbjct: 335 KATNPHAAAASLSAFRSVVW------IAGGQLKGADVDDLVRQAAGRLRGVVLLGADRAR 388

Query: 422 SEDPEKIRAEIIHGIPGFIEKG---------NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
                 IR  +    P               +R+  +  A ++    D +++A     + 
Sbjct: 389 ------IREALERHAPHIPVVEVPGQDTGVMDRV--VTEAAKLAAPGDTVLLA-PAAASY 439

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            +      +     + +R +
Sbjct: 440 DMFAGYAARGDAFAEAVRRL 459


>gi|110598577|ref|ZP_01386845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339811|gb|EAT58318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 465

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 143/398 (35%), Gaps = 41/398 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+         ++ +TGT GK++ A+ + +IC+  G                 + R  
Sbjct: 97  EIAALFCR---ARVVGITGTDGKTTTATLIHRICEADG--------------LLHNYRAF 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
           +   I +  +   L         VE SS+ L+  R    +      TN+  DH+  +   
Sbjct: 140 SVGNIGIPFSSMVLEMHPRDVAVVELSSYQLE--RCVAFRPDIAVITNITPDHLARYEGD 197

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--K 280
              Y  AK R+++    +++      D   +      +     +++      +  H   +
Sbjct: 198 MHRYAAAKFRIYQNQGERDTLIYNDDDPLLTAHFAVDSARFPFQIVPFRMDQRAAHGSGR 257

Query: 281 KVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            +  + N + V  +V G++              G   +YN L A  +   +GI+S +V +
Sbjct: 258 SMVFLDNDRVVFRTVSGEETVVATADFLKESFRGRHNIYNVLAAVAVSKVLGIESGVVRD 317

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L     V  R EFV T +  G I    A   N++   L++         +V+   G D+
Sbjct: 318 VLSDFTGVEHRQEFVMTINGSGWINDSKATNLNAMRQALESAP-----GKVVLIAGGQDK 372

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 I G +   +  I  +       E  EK+ +    G+       +   A+  A  
Sbjct: 373 GNDYATIAGLVRTKVTLIVAI------GESKEKLVSA-FEGVVPVRPAESLQAAVTMARH 425

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            + + + ++ +  G  +  +  N E +       ++++
Sbjct: 426 AVERGESVLFS-PGCASFDMFENFEDRGRQFKQCVQQL 462


>gi|37527517|ref|NP_930861.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|44888164|sp|Q7N148|MURC_PHOLL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|36786952|emb|CAE16026.1| UDP-N-acetylmuramate--alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 491

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 147/421 (34%), Gaps = 51/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V SSA  L D    + +    + V    + L+      +G      +A+ GT GK+
Sbjct: 79  ASVVVASSAI-LADNPEIVAAREARIPVIRRAEMLAELMRYRHG------IAIAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I  ++GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMISSIYAQAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAII 246
                         ++ +    TN+  DH+D YH   +         F   LP    A++
Sbjct: 184 -------------HLQPMVAVITNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVM 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLF 304
             DD   KE++ R       + + G+ +   + +        +   T+S +   D   + 
Sbjct: 230 CIDDPVVKELIPRVGR---YITTYGFSEEADVRITHYQQKGAQGYFTVSRQDMADLKVVL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG-- 356
             PG     NA  A  +    GI  + +L  L        RF+F+G       N +GG  
Sbjct: 287 NAPGRHNALNAAAAVAVATEEGISGSDILAALAGFQGTGRRFDFLGNFSLEHVNGKGGSA 346

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DY H    ++  +K  R      RI+++F                  L+  D+ ++
Sbjct: 347 MLVDDYGHHPTEVDATIKAARAGWPDKRIVMIFQPHRYTRTRDLYDDFANVLNQVDVLLM 406

Query: 416 TDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D     E      D   +   I   G    I   +  +      ++L+  D+++V G G
Sbjct: 407 LDVYSAGEVVIPGADSRSLCRTIRSRGKLDPILVSDPAKVTAVLAQVLDGHDLILVQGAG 466

Query: 469 H 469
           +
Sbjct: 467 N 467


>gi|189347180|ref|YP_001943709.1| UDP-N-acetylmuramate [Chlorobium limicola DSM 245]
 gi|189341327|gb|ACD90730.1| UDP-N-acetylmuramate [Chlorobium limicola DSM 245]
          Length = 474

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 97/283 (34%), Gaps = 22/283 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+  DH D   + +    +  RLF  L+P+    ++  DD  +  V  +A  
Sbjct: 182 RPDIAIINNIEFDHADIFDSLEDIRKS-FRLFVNLIPRNGTLLVNGDDPEACAVASKA-- 238

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             CR    G+  +     K +    N    +   +         PL G+  + N L A  
Sbjct: 239 -FCRTERFGFDQECEWTAKDMNTEENVTTFSIFHLGNPQGKVRIPLFGKHNIMNTLAAVA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+    + E L        R E       G  +  D+AH   +++  L+ +  + 
Sbjct: 298 AARHAGLSMETIAEALPLFKRPKRRMEITEGFESGITLIEDFAHHPTAIKATLEAVSELC 357

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSE--------DPEKIRA 430
            GR IV           +     ++A     A + ++   + R E        D EK+R 
Sbjct: 358 IGRRIVACFEPRSNTTTRNIFQKELARCFGPASVVVMGMVH-RPERYAPDDRLDTEKLRR 416

Query: 431 EIIHGIPGFIEKGNR-----IEAIRTAIEMLNKQDVLVVAGKG 468
           E+          G++      + +R     L K DV+V    G
Sbjct: 417 ELEEREKTVFLAGSQPDDYPADIVRFLKSTLKKNDVVVFMSNG 459


>gi|295839430|ref|ZP_06826363.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
 gi|295827475|gb|EFG65417.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
          Length = 474

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 136/375 (36%), Gaps = 48/375 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I + +G  +  +G               
Sbjct: 102 ELAWRLRGPGAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------ 149

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 ++   + L+ +    ++VE SS+ L  H    ++  + +  NL  DH+D+H + 
Sbjct: 150 ------VSLLDAVLAEEPYDVLAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSM 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKV 282
            AY   K R++E     +   +  A D  ++++++ A    GCR +             V
Sbjct: 202 AAYAADKGRIYEG---NQVACVYNAADPATEKLVRAADVEEGCRAIGFTLGTPRPSEVGV 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFPL-----PGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                  +  +    +    L  L     P    + NAL AA L  A G+ +  V + L 
Sbjct: 259 VEGLLVDRAFVPDRTEQAQELAELADVNPPAPHNIANALAAAALARAYGVPATAVRDGLR 318

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                P R E V T      +    A  +++ E  L           IV    G  +   
Sbjct: 319 AFRPDPHRIEHVATIDGVAYVDDSKATNTHATEASLAAYEP------IVWIAGGLAKGAT 372

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIR 450
              ++   A  L  + ++        D   I   +    P   +   +R       EA+R
Sbjct: 373 FDELVQGAAKRLRGVVLL------GRDRALIAEALARHAPNVPVVDLDRADTGAMSEAVR 426

Query: 451 TAIEMLNKQDVLVVA 465
            A  +  + D +++A
Sbjct: 427 EAAGLAREGDTVLLA 441


>gi|323466063|gb|ADX69750.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           H10]
          Length = 437

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 112/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +++ IG                P   +        
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTTYLIG---------DGRGKGVPDSRFFV------ 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 + + E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 155 ------YEADEYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G+         ++       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFNDTDDFQATEIKKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  + N+     +     +    + + L        RF     +   
Sbjct: 255 GKDLGEFEIHLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      + I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTK-----NKNSVIVFMGAGD 425


>gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila psittaci RD1]
 gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila
           psittaci 6BC]
          Length = 810

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 140/398 (35%), Gaps = 65/398 (16%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL----VVDNTRKFLSLFASRLYGKHPE 115
           I + +A+GA        Y        I  +  I+    +  +  ++L     +L   H  
Sbjct: 42  IDKLVAKGAR-------YLQGHDKHHIPEDCTIIYGSGIAKDNVEYLEAVRKQLPILHRS 94

Query: 116 NILAV----------TGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTT 164
            +LA           +G+ GK++V+S +  I Q +    S+ IG  +++S          
Sbjct: 95  ELLAFLMQEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYAIGGLNSLS---------- 144

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                    L+  S      ++    S G  +H L          TNL  +H+   +  +
Sbjct: 145 ---------LNGYSGSSEYFIAEADESDGSLKHYL----PKVAVVTNLDNEHLSNFEGSK 191

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVC 283
                 +  F   +          D    +E+  R         S G+     + +    
Sbjct: 192 EKLALTIEEFTRKVEDPRLCFYNGD---CQELKGRISGT-----SYGFSQDCNLRIHSYY 243

Query: 284 AIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               +   ++S  GKD+ D    L G+  + NA VA G+ + +GID   + E L+    +
Sbjct: 244 QDGWRSLFSLSFLGKDYLDIDLNLIGKHNIANAAVAMGIALTLGIDEESIREALKNFSGI 303

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E    + +    + DYAH  + +   L+ +R    G   +V  C   R    +  +
Sbjct: 304 QRRMERKNVSEK-FLFFEDYAHHPSEISCTLRGLRDAV-GLRRIVAICQPHRFSRLQYCL 361

Query: 403 GKI--ALDLADIAIVTDDNPRSED------PEKIRAEI 432
                A   AD  I+TD     E       PEK+   I
Sbjct: 362 EDFYKAFQDADEVILTDVYSAGETALDLPSPEKLAETI 399


>gi|51892169|ref|YP_074860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Symbiobacterium thermophilum IAM 14863]
 gi|60390359|sp|Q67QM7|MURD_SYMTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51855858|dbj|BAD40016.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 455

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 132/396 (33%), Gaps = 43/396 (10%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASF 132
           + + L   +  +  + P +     R           +       ++ VTG++GK++  + 
Sbjct: 69  ADHDLIFLTPGMPKHLPEIEAARRRGAAISGEIG-LVLDLCRAPVIGVTGSAGKTTTTTL 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + +I + +G  ++  G    I     +     PS   +   LS    Q V          
Sbjct: 128 IGEILRAAGRETYVGG---NIGKPLIEQVEAIPSEAVVVLELSSFQLQLV---------- 174

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
               HR           TN+  +H+D H T + Y  AK  +F    P +    + ADD  
Sbjct: 175 ----HR----SPHIAVVTNVSPNHLDVHATMEEYVEAKKAIFRRQSPADWLV-LNADDPT 225

Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +     A +       R    G    F+   +V      ++  I      F     LPG
Sbjct: 226 VRAFAAEARSRVVLFSRRADPGGRDAAFVREDRVIWRRGGRETPIL-----FLDEIRLPG 280

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N L A   C   G   + V E + +   V  R E V     G + Y D   TS +
Sbjct: 281 LHNQENVLAAVAACFLAGAPLSAVREVVTQFTGVEHRIEPVRV-LDGVKWYNDSKATSPA 339

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             +             IV+   G D+     PI   +A  +  + ++    P+ E  E +
Sbjct: 340 EAVAALTTLPAP----IVLIAGGSDKGIPFDPIAPLVAEKVKTLILMGPTAPKIE--EAV 393

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           R     G        +  EA+  A E     D +++
Sbjct: 394 RRGGYAG--PIRRAADMAEAVALAREAAAPGDTVLL 427


>gi|238791173|ref|ZP_04634812.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
 gi|238729306|gb|EEQ20821.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
          Length = 491

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 139/423 (32%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 132 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 184 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 230

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  ++         
Sbjct: 231 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G   
Sbjct: 288 APGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLMPVNGKEGSAM 347

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI++VF                  L   D+ ++ 
Sbjct: 348 LVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQVDVLLML 407

Query: 417 DDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D     E P            IR     G    I   +         ++LN  D+++V G
Sbjct: 408 DVYAAGEPPIPGADSRSLCRTIRN---RGKLDPILVSDSETVPEVLAQVLNGDDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|326531704|dbj|BAJ97856.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 503

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 117/279 (41%), Gaps = 18/279 (6%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+     ++  ++ V SD+  + AG +FV + G    G   + +A  +G
Sbjct: 224 LAELLDESKLVPVAVTGDQDVALSGVQSDATLVAAGDLFVCV-GES--GLAGLTEADKRG 280

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A A+V      ++   A       +++VD+    L +  + LYG+  ++  ++ +TGT G
Sbjct: 281 AVAVVADQDVDIEGTLA----CRALVIVDDITAALRVLPACLYGRPSKDMAVIGITGTDG 336

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            ++ +  V+ + +  G+ +  +G     +   +        +   + + K ++ +   G 
Sbjct: 337 VTTASHLVKAMYEAMGVRTGMVGVLGAYAFGTNKLDAQPAASGDSMAVQKLMATMLHNGA 396

Query: 183 THVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240
             V +E ++  +    +D  I       TN+   +++   T + Y ++   LF  ++ P+
Sbjct: 397 EAVVLEKTTDEMLPSGVDSEIDYDIAVLTNVRHGNLEASMTYEGYMSSMASLFSRMVDPE 456

Query: 241 ESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIH 278
               ++  DD  +     +  H       S   +    H
Sbjct: 457 RHRKVVNIDDPSAPFFAAQGGHGVPVVTYSFENKKADAH 495


>gi|167465174|ref|ZP_02330263.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 342

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 108/328 (32%), Gaps = 42/328 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFL-----SLFASRLY 110
            + IA+GA   +   A  ++      +S  +  +   +V    R         + A  + 
Sbjct: 44  EKLIAKGARVYLGHEASHVEGADLVVYSTALPKDNVEIVAAEARNIPILHRSQMLARLMN 103

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +     +AV G  GK++ +S +  + ++ G     I     I     +      +    
Sbjct: 104 ER---KGIAVAGAHGKTTTSSMIALVMEKCGADPTYI-----IGGEIMNIGSNAKAGTGE 155

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNA 229
                   S G                             N+  DH++ +    +    A
Sbjct: 156 YVVAEADESDGTFLQYY----------------PTLALVNNIEADHLENYGGNFENLKKA 199

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
             +   ++ P    AI+  DDAY +E++    +    V++ G           +     K
Sbjct: 200 YAQFLSQVKP-GGKAIVCKDDAYIREMIPYVES---EVITYGIGSDADYQAVDIHLGDRK 255

Query: 289 QQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              ++  +G++       +PG+  V NAL    +C+  G+    V   + + H    RF+
Sbjct: 256 VSFSVLYKGENLGKIELSVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFHGAKRRFQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +G       I  DYAH    +   +  
Sbjct: 316 VMG-EINDILIIDDYAHHPTEISATISA 342


>gi|148977787|ref|ZP_01814343.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
 gi|145963001|gb|EDK28271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
          Length = 452

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 125/363 (34%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G +   +     + +F+   R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFL-VGGVLGNFSISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P          D   ++V+ R         S G  G +   K V       Q  
Sbjct: 207 LV-RTVPGNGRIFSPKQDTAIQDVLSR--GCWSDAESSGEAGDWDAKKLVKD---GSQFE 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+     ++ L G+  V NAL+A      +G+   L  E L K      R EF G 
Sbjct: 261 VYFQGECVGTVVWDLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRRLEFKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
            + G  +Y D+AH   ++E+ L  +R  + S +II V         +G        +L  
Sbjct: 321 VA-GVSVYDDFAHHPTAIELTLGGLRNKVDSKKIIAVLEPRSATMKRGVHKETLADSLKQ 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     ++           + ++  +   +      D ++V 
Sbjct: 380 ADSTYLFQ-------PDNIDWSVQDVADACHQPAHVSDDMDVFVAKIVSEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|170016886|ref|YP_001727805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
 gi|226711918|sp|B1MXV9|MURD_LEUCK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169803743|gb|ACA82361.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
          Length = 449

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 120/351 (34%), Gaps = 45/351 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++  S ++ + + SG +    G   T  S          S   L   LS
Sbjct: 112 RLIAVTGSNGKTTTTSLIRDMLKASGQTVTTAGNIGTPVSEVVGPLT---SQDTLLLELS 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G                 L  IK      TN+  +H+DYH  +  Y  AK ++ +
Sbjct: 169 SFQLMG-----------------LPDIKPDIALITNIFANHLDYHGDRAHYVAAKYQITK 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +    + AD A + +    A     +V+                        + +
Sbjct: 212 NQTANQKLI-LNADGADTPDF---AAKTQAQVVLFSRDNSSDMAWTDGHD-------LII 260

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           EG+    L    L G   + N L A  +    G+ +  +   LE    VP R +++ T  
Sbjct: 261 EGEHVMPLTAIKLVGPHNLENILAAITVSKIAGVTNEAIKSVLEVFGGVPHRLQYLLTE- 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G R Y D   T   +E     + +     I      G DR      ++    L    + 
Sbjct: 320 NGVRYYNDSKAT--DIEATQTALDSFHEPTIW--LAGGLDRGDDLTRLIPN--LSHVKLV 373

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I        E  +K+ A         I   +  EA+  AI   +  DV+++
Sbjct: 374 I-----AFGETQQKVVAIARQAHKPVITVTSVKEAVPVAISSSSAGDVVLL 419


>gi|86132605|ref|ZP_01051198.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
 gi|85816847|gb|EAQ38032.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
          Length = 445

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 131/352 (37%), Gaps = 38/352 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++       I +++G++    G                          
Sbjct: 103 ATIVGITGSNGKTTTTMLTGFILEQAGINLGVAGNIG-------------------DSYA 143

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             ++ + +    +E SS  LD   +           N+  DH+D +    + Y  +K R+
Sbjct: 144 KMVAQKEIDTYVLEISSFQLD--GIADFAPHIAVVLNVTPDHLDRYDYKFENYIASKFRI 201

Query: 234 FEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +  KE+  +IY ADD  S + + + H    ++L      +F +   +   +   Q+ 
Sbjct: 202 --AMNQKETDYLIYDADDPVSVDWLNK-HPVRSKLLPFSLTQEFENGAFIKDNNLVVQID 258

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +           L G+    NA+ A+ +   + I  A + E LE    V  R E V   
Sbjct: 259 NNTF-TMTTNNLALKGQHNKKNAMAASTVANLLNIRKATIRESLEGFQGVEHRLEQVLKI 317

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    I    A   N        + ++    + +V   G D+    R +   I   +  I
Sbjct: 318 NNVQYINDSKATNVN---ATFYALDSMNDPTVWIV--GGVDKGNDYRDLYPLINEKVKAI 372

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN      +K+ +   + +   +E  +  EA++ A ++  + D +++
Sbjct: 373 ICLGVDN------QKLMSHFENMVDIIVETPSMTEAVKIAYKVAERGDNVLL 418


>gi|160872723|ref|ZP_02062855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
 gi|159121522|gb|EDP46860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
          Length = 441

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 131/354 (37%), Gaps = 44/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ K +V S + ++ QR+ L+    G                        AL
Sbjct: 100 APIIAITGSNAKGTVTSLIGKMIQRAHLNVAVGGNIG-------------------KPAL 140

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L+        +E SS  L+      ++    S  N+  DH+D H+T  AY NAK R++
Sbjct: 141 DLLNEPVPDFYVLEISSFQLE--TTYSLRPKLASILNISPDHLDRHKTLTAYINAKQRIY 198

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +       A+   DD     +         +++S G      H  +   ++N  Q    
Sbjct: 199 HQ----ADIALWNRDD-----LNTFPQARTKKIISFGLTTTTPHAHEF-YLYNSHQKNFI 248

Query: 295 VEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +G D         + G     NA+ A  +  AIG+ +  +L  L +   +P R ++V  
Sbjct: 249 AKGHDRLLPVDALFIQGRHNWANAIAALTIGHAIGLPTKAMLTALCEFKGLPHRCQWVK- 307

Query: 352 NSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +G   Y D  A    +    L  +    SG+II++   G  ++     +   +   + 
Sbjct: 308 EFKGVTWYNDSKATNVGATLAALNGLGPSISGKIILI-AGGLSKNADFSLLHNPVKHYVK 366

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I ++  D         +    +          +   A+  A E   + D++++
Sbjct: 367 KIILIGRD-------AALLKNTLEKSTAIQTVSDLRHAVNLAHETARRGDIVLL 413


>gi|260878003|ref|ZP_05890358.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308089815|gb|EFO39510.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
          Length = 452

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 124/360 (34%), Gaps = 29/360 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R      +     + G+    +    + +  +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQALADVLERGCWTERQ-----FSGEDGDWQAHKLVLDGSKFE 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++++G+      + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VALQGEKVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
             +G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 E-QGITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      + I  +     P F++   +   A    +E     D ++V   G
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQCKQ--PAFVDADIDNFVA--KIVERAQPGDQILVMSNG 435


>gi|260752700|ref|YP_003225593.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552063|gb|ACV75009.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 441

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 129/399 (32%), Gaps = 59/399 (14%)

Query: 67  GAEAIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           G  A VVS    + +   A +     I ++ +   F               ++ +TGT+G
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIGDIELFAQAHGFWERHGRCCPVVGITGTNG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  + +  I + +GL +   G                         L+          
Sbjct: 133 KSTTTALIHHILKEAGLPTLMGGNIGL-------------------PLLAADPLPDGGVY 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS+ +D      +       TN+  DH+D H   + Y  AK RLF  L      A+
Sbjct: 174 VLELSSYQIDLTFT--LDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFL-LQSSPHYAV 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DD  S+ + K++      V +     +                              
Sbjct: 231 IATDDIPSQVIAKQSAAHLVAVHADNISAEDQ-----------------------VNWPN 267

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     N ++A  +   +GI   ++ + L     +P R + +G     G +++D +  
Sbjct: 268 LQGPHNAQNTVLAMAVAHILGISDDVISKALISYAGLPHRMQKIGERR--GVLFIDDSKA 325

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +N   M              ++ G     D          A         T       D 
Sbjct: 326 TN--AMATAPALAAFPAIHWILGGVPKTADLDP-----CKAFYNHIRQAYT-IGQAGPDY 377

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++  E   G+   +E G   +A+R A E     +V+++
Sbjct: 378 AQLLRE--AGV-NVVECGTLEKAVRLAAEEAQPDEVVML 413


>gi|311104878|ref|YP_003977731.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8]
 gi|310759567|gb|ADP15016.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8]
          Length = 871

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 134/375 (35%), Gaps = 32/375 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ VTGT+GK+ VA  V ++   SG  +   G   +   +    ++        A    
Sbjct: 482 PIVGVTGTNGKTVVARLVARLLSLSGKRT---GLACSEGLYLDRRQVQKGDRADFASGTR 538

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHIDYHQTQQ-AYFNAKMRL 233
            L ++ +    +E  S  +    L   +   G  TN+   DH+      +        R 
Sbjct: 539 LLMNRNLDAAVIENDSGVILGQGLAYDRCQVGVVTNIDDADHLGDFDINETERMFNVFRT 598

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLKKVCAIHN 287
             +++     A++ A D     V++ A  +   V+  G           +          
Sbjct: 599 QVDVVLPGGAAVLNARDP---RVVEMAELSDGAVIFFGIDPALPAIAAHLQQDGRAVFVR 655

Query: 288 KQQVTISVEGKD--------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              + ++  G++                  FQV N L A G   A+ I  AL+   +E  
Sbjct: 656 DGDIVLAQGGREERLAAVAAIPLTHGGRVAFQVENVLAAVGAAWALDIPVALIRAGIETF 715

Query: 340 HVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            +      ++F      G  + VD  H +++L  ++  I    S     V+  G DR   
Sbjct: 716 DIDQADAPWQFTLFERNGSTVVVDDVHNASALRPLIAAIDQFPSTTRAAVYSAGADRRDA 775

Query: 398 KRPIMGKIALDLADIAIVTDD------NPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAI 449
                GK+  D  D  ++ DD       P  E    +R  +  G  +    E+ +  +AI
Sbjct: 776 DLIEQGKLLGDAFDRVVLYDDLTVRSKRPEGESRALLRQGLAQGARVKDIQEEPDHGKAI 835

Query: 450 RTAIEMLNKQDVLVV 464
           ++ ++ +   D +++
Sbjct: 836 QSQLDGIAAGDFVLL 850


>gi|300774447|ref|ZP_07084310.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
 gi|300506262|gb|EFK37397.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
          Length = 452

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 131/364 (35%), Gaps = 48/364 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + +A+ GT GK++ ++ V  +C+ + L          +   +++ +             S
Sbjct: 112 DCIAIAGTHGKTTTSTLVAHLCKEADLPFSCF-----LGGISENFK-------------S 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G  +  VEA     D+  L+ +       T+   DH+D +  +        R F 
Sbjct: 154 NFLYNGSMYSVVEADE--YDRSFLN-LSPDWAVVTSTDADHLDIYGDKSHIEEG-FRQFA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L+P++    I       ++ ++         ++   +    +   +   H+K       
Sbjct: 210 ALVPQDKQLFI-------RKGLEIGRGHQTYAVN---EPADYYSDNLRMDHDKIYFDFHT 259

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             +   DF++ +PG   V NA  A  +   +G D   + + +     +  R+        
Sbjct: 260 PTETVKDFVWEIPGIHNVENATAALAILHNLGADFDTLKKAISNFKGIKRRYT-KHIYQN 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G     DYAH    +  ++ +IRT     +++V F                 +L  AD  
Sbjct: 319 GKIYIDDYAHHPTEINAVMSSIRTFYPDKKLLVAFQPHLFSRTRDFADGFAESLSKADEL 378

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIE--AIRTAIEMLNKQ--DVLVVA 465
           I+ D  P  E       E   GI         K ++ E  ++  A E + ++  D+L+  
Sbjct: 379 ILLDIYPARE-----LQENFEGITSNWLLEKVKLDKKEVSSLSDAFEKIKEKDFDILLTV 433

Query: 466 GKGH 469
           G G+
Sbjct: 434 GAGN 437


>gi|163787491|ref|ZP_02181938.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteriales bacterium
           ALC-1]
 gi|159877379|gb|EDP71436.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteriales bacterium
           ALC-1]
          Length = 450

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 116/361 (32%), Gaps = 50/361 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+ GT GK++  S +  +          +  T+ +   +++               S L
Sbjct: 115 LAIAGTHGKTTTTSILGHLLNEC-----NVSMTAFLGGISENYN-------------SNL 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     VEA         L          T++  DH+D +        +  + F E 
Sbjct: 157 ILNGTDVTVVEADEFDRSFLTLS---PDIACITSMDADHLDIYGDASELIKS-FKDFTEC 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISV 295
           +       +                     ++ G +    +  +   I N   V    + 
Sbjct: 213 IKPNGKLFVRNGLPLEG-------------ITYGIEDDSDYSAQNVKIKNGSYVFDMQTP 259

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G   DF F LPG   + NA++A  + +  G     + + L     V  RF +    +  
Sbjct: 260 DGIYKDFQFNLPGRHNLSNAIIALAMAVDFGCPYNQLAKGLASYKGVKRRFTYQ-IKTED 318

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH    +  + + +R +    +++ VF                 +L   D  +
Sbjct: 319 FVFIDDYAHHPEEINAVHQAVREMYPDRKVLAVFQPHLYTRTRDFIDGFAESLSKFDELL 378

Query: 415 VTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + D  P  E P +      I  ++ +     I+K   I+ I+          V++  G G
Sbjct: 379 LLDIYPARELPIEGVTSSWILNKVENSSKKLIQKSELIDEIKK--SDAQ---VVLTIGAG 433

Query: 469 H 469
            
Sbjct: 434 D 434


>gi|298694474|gb|ADI97696.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 449

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 126/352 (35%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    + 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                   +  +  +     L     + S    +++ CGG     +   +     ++  +
Sbjct: 319 R------TNKYYNDSKATNTLATQFALNSFNQPIIWLCGGLDRGNEFDELIPYMENVRVM 372

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +      +                  IE  N  +A+    +++   DV+++
Sbjct: 373 VVFGQTKAKFAKLGN------SQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|329124133|ref|ZP_08252680.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
 gi|327467558|gb|EGF13056.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
          Length = 475

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 127/376 (33%), Gaps = 40/376 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA      +  A+ +   P++      +   + A  +  +H
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I  ++ L    +      S+          +  YL   
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D ++       A    
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +             Q  +                I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELIPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
             + +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPDNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGACRRFDQLGEFI 334

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +   R+  DY H    + + +K  R      RI+++F                  L  
Sbjct: 335 RPNGKVRLVDDYGHHPTEVSVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGEAP 410


>gi|301161366|emb|CBW20906.1| putative UDP-N-acetylmuramate--L-alanine ligase [Bacteroides
           fragilis 638R]
          Length = 464

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 140/419 (33%), Gaps = 47/419 (11%)

Query: 60  IPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           IP+A    A   +V++ A   +    T   +         +K   +  +          L
Sbjct: 63  IPEACKDKATTLVVLTPAVPQEHAELTYFRDNGF----EIQKRAQVLGTITR---SSKGL 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT GK++ ++    +  +S      +G T+ +   +++               + L 
Sbjct: 116 CVAGTHGKTTTSTMTAHLFHQS-----HVGCTAFLGGISKNYGT------------NLLL 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S    +  +EA       H L          T    DH+D + T+QAY  +    +  L+
Sbjct: 159 SSTSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTEQAYLKS-FEHYTTLI 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 II    +   +V +     G ++ +        H + +   + +  +       
Sbjct: 215 QPGGALIIRKGISLQPKVKE-----GVKMYTYSRDEGDFHAENIRIGNGEIFIDFVGPDI 269

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             D     +P    + N + A  L    G+    + + +     V  RF+F   N+R   
Sbjct: 270 RIDNIQLGVPVSINIENGVAAMALAHLNGVTPEEIKQGMASFRGVDRRFDFKIKNNR-IV 328

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DYAH  + ++  + ++R      +I  VF                 +L L D  I+ 
Sbjct: 329 FLSDYAHHPSEIKQSVMSMRELYRDKKITAVFQPHLYTRTRDFYKDFADSLSLLDEVILV 388

Query: 417 DDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D  P  E P        I   +  GI   + K    E I   ++     +VL+  G G 
Sbjct: 389 DIYPAREQPIPGVSSRLIYDNLRPGIEKSMCK---KEEILDVLK-AKHIEVLITLGAGD 443


>gi|254430681|ref|ZP_05044384.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001]
 gi|197625134|gb|EDY37693.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001]
          Length = 478

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 129/441 (29%), Gaps = 81/441 (18%)

Query: 62  QAIAQG---AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            AI  G   A  +V+SSA    +          + +   +    +L          +  +
Sbjct: 66  AAICSGTSMAPLVVISSAVPETNPELKEARRVGLKICHRSDVLAALI-------QNQASI 118

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV G+ GK++ +S +  +   +G       PT+ I            S            
Sbjct: 119 AVAGSHGKTTTSSLIATLLAATGHD-----PTAVIGGIVPAFGSNGRSGKGRLLVAEADE 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S G                 L   K   G  TN+  DH D++   +A             
Sbjct: 174 SDGS----------------LVKFKPGLGVLTNVELDHTDHYPDLEALIGT----LRRFA 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +    +   D A  +E     H           +G       +    +        +G+
Sbjct: 214 GRSGRLLANHDCAILREHFDAQHWWSITT----TEGIDFAAVALEERGDGTTAEFYEQGQ 269

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PLPG   + NA+ A   C   G+  A +   +  L     RF+F G    G  
Sbjct: 270 PVGRICLPLPGRHNLSNAVAALAACRLEGVAFAELQRAVAGLKPPGRRFDFRGIW-NGRL 328

Query: 358 IYVDYAHTSNSLEMIL----------KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +  DYAH  + +   L          ++       R++ VF         +       AL
Sbjct: 329 VVDDYAHHPSEVAATLGMAQLMVGSGRSPLPQVPRRLVAVFQPHRYSRTAQFLPGFAEAL 388

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT---------------- 451
             A   ++       E P       I G+          EAIR                 
Sbjct: 389 RNAHTVLIAPLYAAGEAP-------IDGVSSQAL----AEAIRALDPTLPVMVASSLDEL 437

Query: 452 AIEMLN---KQDVLVVAGKGH 469
           A+++     + D+++  G G 
Sbjct: 438 AVQVAGCSVEGDLVLAMGAGD 458


>gi|94985823|ref|YP_605187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
 gi|94556104|gb|ABF46018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
          Length = 429

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 141/451 (31%), Gaps = 83/451 (18%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR       FVA+ G +  G+ F+  A+A GA  ++        D         
Sbjct: 22  KRLTWDSREASPEVAFVALPGEQMHGNRFVQAALAAGAPFVLT-------DLDVPRAVRV 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P       R+ L  +A     K+P  ++ +TG+ GK++  S+                  
Sbjct: 75  PSQAGQGAREALFAWARAERAKNPL-VVGITGSVGKTTAKSYAAAALNA----------- 122

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIA 206
                         P    +     +L   G +     V +     G     +D ++   
Sbjct: 123 -----------HFMPVYNTMPAIACFLIEFGASGAPLVVEMGIDRVGEMAELVDLVRPDV 171

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  T +G  H++   + +     K  + +                       +A      
Sbjct: 172 GVVTAIGAAHLEQLGSLEGVAREKGVILQGRRGLVGT---------------QAAPWFPH 216

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             + G+ +G     + +       Q T     +      PL    Q   A++   L +  
Sbjct: 217 TPTYGFGEGVTYAGEALTVSPQGAQFTF----QGVPVTLPLASRVQAEAAVLGLALALEA 272

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384
           G+      + L  + V  GR+           +  D Y  +  ++   L  + T   GR 
Sbjct: 273 GLPLPEAAQRLAAVQVPGGRYRVHPGR---FTVIDDAYNASPLAVTAALDALATF-GGRR 328

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKG 443
           I V G   +    +R +  +I +                      A++ +G+  F  E G
Sbjct: 329 ISVLGRMLELGATERELHAQIGVHARQK-----------------ADLTYGVGAFAAELG 371

Query: 444 NRI-----EAIRTAIEMLNKQDVLVV-AGKG 468
            R      E +   +  +   DV++V A +G
Sbjct: 372 ERAYRTVPELLEDLLAEVRDGDVVLVKASRG 402


>gi|240168216|ref|ZP_04746875.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium kansasii ATCC
           12478]
          Length = 488

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 103/289 (35%), Gaps = 30/289 (10%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ + +AY        E L P     ++  DD  + E+ +R+   
Sbjct: 183 PDVAVVTNIESDHLDFYGSTEAYVGVFDSFVERLAP-GGALVVCTDDPGAAELARRSAEL 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVT-----ISVEGKDFD--FLFPLPGEFQVYNAL 316
           G RVL  G             +  +Q+ T     + + G+         +PG     NAL
Sbjct: 242 GIRVLRYGSAEPEGAPLAATLLSWEQRGTEAVAHLRLAGERHPRVMRLAVPGRHMALNAL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    I +      VL+ L     V  RFE VG      R++ DYAH    +   L  +
Sbjct: 302 GALLAAIEVDAAIDEVLDGLAGFEGVRRRFELVGAVG-SVRVFDDYAHHPTEIGATLAAV 360

Query: 377 RTI----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           R++     +GR++VVF                 AL  AD   V D     E P       
Sbjct: 361 RSVLQHGGTGRLLVVFQPHLYSRTKAFAAEFGRALSAADAVFVLDVYGAREQP------- 413

Query: 433 IHGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHET 471
           + G+ G    G+    +R                   DV+V  G G  T
Sbjct: 414 LAGVSGASVAGHVSVPVRYLPDFSAVAGEVAAAAGPGDVIVTMGAGDVT 462


>gi|229524524|ref|ZP_04413929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
 gi|229338105|gb|EEO03122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
          Length = 451

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 115/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVLQR--GCWSETEFSGEQGEWQAKKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLFKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|332768881|gb|EGJ99060.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2930-71]
          Length = 476

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 43  QQLLNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 102

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 103 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 153

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 154 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 198

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 199 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 255

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 256 HFTLLRQDKEPMCVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 315

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 316 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 375

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 376 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 433

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 434 MLAPVLTGNDLILVQGAGN 452


>gi|325977740|ref|YP_004287456.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177668|emb|CBZ47712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 452

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 141/429 (32%), Gaps = 62/429 (14%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G   D +      + +G + I  S    L D +  +    P +  DN      + A  + 
Sbjct: 41  GKPFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNP-----MVARAIE 95

Query: 111 GKHP-------------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
              P               I+ +TG++GK++  + + +     G S    G    I   A
Sbjct: 96  KNIPVITEVELAYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKSGLLSG---NIGFPA 152

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +   T      L   LS     G                  D         TNL   HI
Sbjct: 153 SEVAQTATDKDILVMELSSFQLMG-----------------TDTFHPHIAVITNLMPTHI 195

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  + + +   +   + +  D   +   K A        +    G ++
Sbjct: 196 DYHGTFEEYVAAKWNIQKNMTADDFVVLNFNQDLAKELAQKTAAQVVPFSTTEKVDGAYL 255

Query: 278 HLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                         T+  +G+         +PG   V NAL    +    GI +  + E 
Sbjct: 256 DGD-----------TLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIANDAIKET 304

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     V  R + +G    G + Y D   T+  +    K +        +++   G DR 
Sbjct: 305 LTHFGGVKHRLQALG-GINGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRG 360

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                ++  I      + I+ +  PR +     RA     +P +++  +  +A R A + 
Sbjct: 361 NEFDELVPDITGVKL-MVILGESAPRVK-----RAADKANVP-YVDAKDVADAARIAYDK 413

Query: 456 LNKQDVLVV 464
               DV+++
Sbjct: 414 AEAGDVVLL 422


>gi|238060680|ref|ZP_04605389.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
 gi|237882491|gb|EEP71319.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
          Length = 484

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 90/439 (20%), Positives = 153/439 (34%), Gaps = 62/439 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A  +GA  +V ++ A    +  A   +  P++        L+           
Sbjct: 65  GHD---AAYVEGASCVVHTTGARHAPEVRAARAAGIPVVRRAQVLDKLAD---------G 112

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             ++AV+G+ GKS+ A  +  I +  G   ++ IG   T             S  +L ++
Sbjct: 113 RRLVAVSGSHGKSTTAGMLVHILRTLGQDPTYLIGADLT----------GPGSGAHLGRS 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++    ++ S               +       TN+  DH     ++     A +  
Sbjct: 163 RLLVAEADESYRSF------------HLLSPSLAVVTNVTDDH-PSFVSRADVLRAYVE- 208

Query: 234 FEELLPKESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQ 290
           F   +  +   I+ AD   A     +         VL  G      + L  V A      
Sbjct: 209 FGCRVAPDGFLIVNADCVGATVAAQVIADERPDLMVLRCGRDRAADVRLLDVHAEGWSVS 268

Query: 291 VTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            T+ +  G +     P P    +++A  A    +A+G+D A V   +     V  RFE +
Sbjct: 269 ATVRMPNGTETRLTLPTPATHHLHDAAAAVACAVALGLDPADVTAAVGTFAGVRRRFEHI 328

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-----------RDQGK 398
            T + G  +   YA   N +   L+  RT+  GR+ VVF   G            R    
Sbjct: 329 DTRA-GVTVIDSYASHPNEIAADLQAARTLARGRVFVVFQPSGHARVLALGERIGRVLAL 387

Query: 399 RPIMGKIALDLADIAIVTD--DNPRS----EDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
              +G++  D AD  ++ D  DN        D + I A +  G        +   A R  
Sbjct: 388 DERIGRVLADNADYVLLLDVPDNLSDGRPLADTDAIAARLRDGAYCLPLGPD--HAARVI 445

Query: 453 IEMLNKQDVLVVAGKGHET 471
             M  + DV++  G G  T
Sbjct: 446 ARMAGRGDVVLTMGTGDVT 464


>gi|198274307|ref|ZP_03206839.1| hypothetical protein BACPLE_00451 [Bacteroides plebeius DSM 17135]
 gi|198272797|gb|EDY97066.1| hypothetical protein BACPLE_00451 [Bacteroides plebeius DSM 17135]
          Length = 458

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 124/365 (33%), Gaps = 39/365 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             E  + V GT GK++ ++    +   S      +G  + +   +++ +           
Sbjct: 110 QTEKGMCVAGTHGKTTTSTMAAFLMDHS-----HVGCNAFLGGISKNYQT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L S    +V +EA       H L      A   T    DH+D + T +AY  +  R
Sbjct: 155 --NLLLSDKSDYVVIEADEFDRSFHWL---TPYATVITATDSDHLDIYGTHEAYLES-FR 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+  +   II        +V       G  V +   +    H + +     +    
Sbjct: 209 KYTSLIRPDGYLIIKEGLELKPDV-----QPGVTVYTYSTEKGDFHAENIRIDDGEIYFD 263

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            IS  G   +    +P    + N + A  L    G  +  +   + +   V  RF+F   
Sbjct: 264 YISPLGNITNVQLGVPVFVNIENGIAAMALAQIGGATTEEIKAAMPQFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           NS       DYAH    +   + +IR +   R I  VF                 +L L 
Sbjct: 324 NSH-IVFLSDYAHHPEEIRQSVSSIRKLYPNRKITAVFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+ D  P  E P      + I   +  GI   +      E I   ++   K DVL+ 
Sbjct: 383 DEVILLDIYPAREAPIPGVSSQLIYDNLRPGIEKSMCS---KEQIMEVLKN-KKLDVLIT 438

Query: 465 AGKGH 469
            G G 
Sbjct: 439 LGAGD 443


>gi|224476285|ref|YP_002633891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254766056|sp|B9DPR3|MURD_STACT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222420892|emb|CAL27706.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 449

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 121/350 (34%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  +  +S  +    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFDKSRQTGLLSGNIGYVASKVAQEAKP---EDYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G            ++Q+R           TN+   H+DYH T + Y NAK R++
Sbjct: 168 SSFQLLG------------IEQYR-----PHIAIITNIYSAHLDYHGTLEEYRNAKRRIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y      +  +        +V       +   +           + + 
Sbjct: 211 KNQTEDDFLICNYN-----QRHLIETDGLKSKVYYFSTSQEVDGIYVKDGYIMLNGLRLI 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         LPGE  + N L A    +  G+    V+  L     +  R +++G+N  
Sbjct: 266 HKD-----DIVLPGEHNLENILAAVLAAVLGGVSIDAVIATLTSFSGIKHRLQYIGSNKT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               Y + +  +N+L      + +     I +    G DR  G   ++  +        +
Sbjct: 321 NK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNGFDELIPYMKNV---RVM 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +T      E  +K+           I   +  +A+     ++   DV+++
Sbjct: 373 IT----FGETQDKLTKLGESQGKYVIRATDVKDAVDKVQNVIEPNDVVLL 418


>gi|87199153|ref|YP_496410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|118595671|sp|Q2G997|MURD_NOVAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|87134834|gb|ABD25576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 443

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 130/405 (32%), Gaps = 73/405 (18%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G   +VVS    L        +     P++        + LFA       P  ++ +TGT
Sbjct: 64  GFAGVVVSPGVPLNRHPIADHARAAGVPVI------GDIELFAQARADLPPHRVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+    V  IC  +GL +   G         +                  L   GV 
Sbjct: 118 NGKSTTTMLVHHICAAAGLPARLGGNIGLPILGQEP-----------------LPEGGV- 159

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +     +  NL  DH+D +     Y  +K RLF      +  
Sbjct: 160 -YVLELSSYQIDL--TQSLACDVAALINLSPDHLDRYDGFAGYAASKARLFAMQRADQHA 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                D  ++ E+ + A        S  +   F+H+ +  A+H          G+     
Sbjct: 217 VFGCGD-EHTLEIAREA--------SATHDTGFVHVVQPSALH----------GQLEWPS 257

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
              P    + NA +A  +   +GI   +    L     +P R E V   +    +    A
Sbjct: 258 LQGP--HNLQNAAIAVEIARQLGIAEDIWRSALASFVGLPHRMERVAEANGVLFVNDSKA 315

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI----VTDDN 419
               S    L            ++ G     +  +            D  +    + +  
Sbjct: 316 TNPASTAPALGA----YPRIHWILGGLPKSDNLDE-------CAPYFDHVVAAYTIGEAG 364

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           PR        AEI+  +          +A+R A+E     DV+++
Sbjct: 365 PRF-------AEILEPVMPVTRSEMLCDAVRQAMEAAQPGDVVML 402


>gi|23016783|ref|ZP_00056535.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 472

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 135/413 (32%), Gaps = 46/413 (11%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V S+A    + D  A      P+L    TR    L A           + + GTSG
Sbjct: 69  AQVLVTSAAVEDTVPDVVAARAQGAPML----TR--PQLLARLFNA--STLPIGIAGTSG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+    +  + +R G          T+ + A       P   +     S L   G   V
Sbjct: 121 KSTTTGMLGWVLERCGQRP-------TVMNGAVMKNFVRPDSPF----SSALVGAGPAFV 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S G   +             N+  DH    ++         RLF +   K   A+
Sbjct: 170 AEVDESDGSIANYT----PQIALVNNIALDH----KSMDELR----RLFADFTAKARIAV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304
           +  D+  +  +         R  S+   G  +  + +    +    T     G+      
Sbjct: 218 LNLDNDETAALAATLPADRLRTYSLNDTGADLRAEDITPAPDGIGFTAREKNGQAVAVKL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NAL A     A G+        L +   V  R E VG+   G  +  D+AH
Sbjct: 278 LVPGRHNVANALAALAAARAAGLGLEESARALGEFSGVRRRLETVGSRG-GVTVIDDFAH 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG------DRDQGKRPIMGKIALD----LADIAI 414
             + +   L  +     GR++V+F   G       +D+      GK+  D    + D   
Sbjct: 337 NPDKIAATLATLHDW-PGRLLVMFQPHGFGPLRLMKDEFVACFAGKLGPDDVLIMPDPVY 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
                 RS   + I   +       +    R       ++M    D +V+ G 
Sbjct: 396 FGGTVDRSVTSDHIAEAVTARGHKALAIPERAACGDALVKMARPGDRIVIMGA 448


>gi|326387156|ref|ZP_08208766.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208337|gb|EGD59144.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 90/417 (21%), Positives = 142/417 (34%), Gaps = 54/417 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRK-----FLSLFASRLYGKHPENILAVTGTSGKS 127
           ++S   +   SA I    P +V   T          L A+        + +AV GTSGKS
Sbjct: 80  ITSPTQVLVASAAIEDTVPEVVAARTLGCPRLSRADLLAALFNR--AAHPIAVGGTSGKS 137

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   +  I   +G          TI + A       P   +   A + + +       V
Sbjct: 138 TVTGMIGWILTVAGRDP-------TIMNGAVMKNFVAPEAPF---ASARVGTGTDFVAEV 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           + S   +  +R            N+  DH    ++ +        LF + L +   A I 
Sbjct: 188 DESDGSIALYR-----PAIAVLNNVSLDH----KSLEELR----VLFGDFLARAQAAAIN 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDF 302
           ADD  S  +  RA  A    L+ G+           +I        +       G+   F
Sbjct: 235 ADDPESMALAPRARCA----LTFGFGETAQISVDPTSIRQGPTTIAATVIDRRSGETHAF 290

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P PG   + NAL A   C   G+  A  +  LE    +  RF+ VGT   G  +  D+
Sbjct: 291 TLPQPGRHNLANALAALAACDLSGVPLAQAVAALESFAGLARRFDIVGTTPSGITVIDDF 350

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA------DIAIVT 416
            H    +   L  ++    GR+I +F   G      R +  ++A   A      D  I+T
Sbjct: 351 GHNPEKVAATLTTLKAH-PGRVIALFQPHGYG--PLRQMGTELAEVFATRLDAGDETILT 407

Query: 417 DD------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +         RS   E+I   I            R +A      +    D +V+ G 
Sbjct: 408 EPVYFGGTVDRSVGSERIVDLITADGGKARHIPTRAQAADAIRALARPGDRIVIMGA 464


>gi|116492948|ref|YP_804683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265588|sp|Q03EY1|MURD_PEDPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116103098|gb|ABJ68241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 455

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 148/398 (37%), Gaps = 45/398 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVTGTSGK 126
           I+  +   L   +  I    P+LV    R          A  +       ++ VTG++GK
Sbjct: 68  ILSQNKIELIVKNPGIPYTNPVLVDAQARGIKIVSEPELAYWVMD---SELIGVTGSNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V + +Q +   +   ++  G     ++                     ++ +      
Sbjct: 125 TTVTTLIQLMLDDNKKHAYVAGNIGVPATT--------------------VAQKATAEDK 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +           +D +        N+   H+D+H+T++ Y N KM + +    K+   +I
Sbjct: 165 IVMELSSFMLAGIDRLHPHIAVLNNIFASHLDWHKTRENYVNDKMNITKNQT-KDDFLVI 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+   +E+ KR      +V+    QG    L K  A   + ++    E         +
Sbjct: 224 NWDNTEWQELAKRTQ---AKVVPFSRQG----LTKSGAYEIEGKLYFKDELIMEADEIGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  V NAL A  +     + +A + + L     V  R ++V  N  G + Y D   T 
Sbjct: 277 PGEQNVENALAAIAVAKIEKVSTAHIKQVLTTFGGVKHRIQYV-ENLNGRQFYNDSKAT- 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +E     +R+      +++   G DR      ++  +  ++ ++ +  +    +E  +
Sbjct: 335 -DIEATQVALRSFKKP--VILIAGGLDRHDDLDRLIPDLEPNVKEVIVNGE---TAEKFK 388

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI      GI    +     E++  A +   + D++++
Sbjct: 389 KIAQ--KAGISVIKDSSRVSESVEIAYQDSKEGDIILL 424


>gi|300774251|ref|ZP_07084118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758930|gb|EFK55759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 457

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 121/365 (33%), Gaps = 43/365 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA++        +  +TG++GKS+       I Q++G++    G               
Sbjct: 105 EFAAQYTN---ARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGNIG------------ 149

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++ +      +E SS  LD   +   +       N+  DH+D +   
Sbjct: 150 -------RSFALQVAQEKFDVYVLEISSFMLDD--MYQFRADVAVILNITPDHLDRYDHK 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHL 279
            + Y ++K R+       +       D+   K + +    A    ++       G ++  
Sbjct: 201 MENYVDSKFRMIRNQTANDYFIYCLDDEETVKGLERHHTEAAIWPMTQEQVINPGAYLDQ 260

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +K   I+  +     +  +D      L G+  VYN + A  +     + +  + E +   
Sbjct: 261 EKNIIINTPKGEQFIMNTED----LSLQGKHNVYNNMAAGLVAKVQELRNRSMQESMSSY 316

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +P R E V        I    A   NS+   L++         IV+   G D+     
Sbjct: 317 VNIPHRLEHVACIGGVNYINDSKATNVNSVWYALESFSPQ-----IVLIMGGVDKGNDYE 371

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +   +   +  I  +  DN R      I           +   +  +A+  A  +  K 
Sbjct: 372 MLRDLVRSKVRAIICIGKDNTR------IHESFEEDTDVIVNSSSMKDAVEIASHIAQKG 425

Query: 460 DVLVV 464
           D +++
Sbjct: 426 DTVLL 430


>gi|16763519|ref|NP_459134.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161612473|ref|YP_001586438.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167990002|ref|ZP_02571102.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230408|ref|ZP_02655466.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168234893|ref|ZP_02659951.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243456|ref|ZP_02668388.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168820877|ref|ZP_02832877.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194450712|ref|YP_002044099.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470477|ref|ZP_03076461.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734645|ref|YP_002113147.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197264975|ref|ZP_03165049.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200387518|ref|ZP_03214130.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927332|ref|ZP_03218534.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|20532170|sp|Q8ZRU2|MURC_SALTY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082496|sp|A9MZM0|MURC_SALPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620430|sp|B4TXH9|MURC_SALSV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620433|sp|B4TJ88|MURC_SALHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16418629|gb|AAL19093.1| L-alanine adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161361837|gb|ABX65605.1| hypothetical protein SPAB_00163 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409016|gb|ACF69235.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456841|gb|EDX45680.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710147|gb|ACF89368.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197243230|gb|EDY25850.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291894|gb|EDY31244.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604616|gb|EDZ03161.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323997|gb|EDZ09192.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205331420|gb|EDZ18184.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335054|gb|EDZ21818.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337526|gb|EDZ24290.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342532|gb|EDZ29296.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|261245362|emb|CBG23151.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991807|gb|ACY86692.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156757|emb|CBW16232.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911098|dbj|BAJ35072.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084372|emb|CBY94165.1| UDP-N-acetylmuramate-alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222297|gb|EFX47369.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615950|gb|EFY12867.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620734|gb|EFY17594.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623914|gb|EFY20751.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627362|gb|EFY24153.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630669|gb|EFY27433.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638111|gb|EFY34812.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640597|gb|EFY37248.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647738|gb|EFY44223.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648087|gb|EFY44554.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656881|gb|EFY53167.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657409|gb|EFY53681.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663728|gb|EFY59928.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666561|gb|EFY62739.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672280|gb|EFY68392.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676408|gb|EFY72479.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679499|gb|EFY75544.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686172|gb|EFY82156.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323128449|gb|ADX15879.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195016|gb|EFZ80202.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200075|gb|EFZ85162.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201104|gb|EFZ86173.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209501|gb|EFZ94434.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212247|gb|EFZ97071.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216552|gb|EGA01278.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219901|gb|EGA04379.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225819|gb|EGA10039.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228639|gb|EGA12768.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236747|gb|EGA20823.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239752|gb|EGA23799.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242200|gb|EGA26229.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249376|gb|EGA33292.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252291|gb|EGA36142.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256619|gb|EGA40349.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262988|gb|EGA46538.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265473|gb|EGA48969.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271739|gb|EGA55157.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|332987082|gb|AEF06065.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 491

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 144/434 (33%), Gaps = 61/434 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+ +   + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  D       PG     NA  A  +    GI    +L  LE       RF+F+G   
Sbjct: 276 RQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIADDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R       ++++F                
Sbjct: 336 LEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK- 458
             L   D  ++ D  P  E P  I       +   I    +I+ I          ML   
Sbjct: 396 NVLTQVDALLMLDVYPAGEAP--IPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPV 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LTGNDLILVQGAGN 467


>gi|212638300|ref|YP_002314820.1| UDP-N-acetylmuramate--L-alanine ligase [Anoxybacillus flavithermus
           WK1]
 gi|226711857|sp|B7GK78|MURC_ANOFW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212559780|gb|ACJ32835.1| UDP-N-acetyl muramate-alanine ligase [Anoxybacillus flavithermus
           WK1]
          Length = 433

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 145/423 (34%), Gaps = 66/423 (15%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            ++  +A+    ++  A      P++      +FL  F  +         +AVTG  GK+
Sbjct: 63  VVIAGNAFPDTHEEIVAARELGVPVI---RYHQFLGDFLQKF------TSIAVTGAHGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +  + Q +  +S+ IG  S                            +G  +   
Sbjct: 114 STTGLLAHVMQGAKPTSYLIGDGSGKG------------------------REGSEYFVF 149

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII- 246
           EA      +H L          TN+  DH DY    +  F+A    F+++  +    II 
Sbjct: 150 EACE--YRRHFLAY-SPDYAIMTNIDFDHPDYFANIEDVFSA----FQQMAWQVKKGIIA 202

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD Y +++  +           G    F   + +          + V    F  F  P
Sbjct: 203 CGDDEYLQKIQAKVP---VVFYGFGEDNDFQ-ARNIVKTPEGTSFDVFVRHTFFASFHIP 258

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+  V NAL    LC   GID  ++ E L+    V  RF      S+   +  DYAH 
Sbjct: 259 RYGDHNVLNALAVIALCHYEGIDVNIIQERLKTFPGVKRRFHEKMLGSQ--VLIDDYAHH 316

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSE 423
              +   ++  R      +I+ +F                 +L LAD   + D  +   E
Sbjct: 317 PTEIRATIEAARQKYPERQIVAIFQPHTYTRTQTFLDEFAESLSLADAVYLCDIFSSARE 376

Query: 424 DPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGHETVHIVTNGEK 480
              K+   ++   I G  +  +  +     +++L + D  VL+  G G      +   ++
Sbjct: 377 HQGKLSIEDLRAKIEGA-KLLDEEQ-----VDVLKQHDNAVLIFMGAGD-----IQKFQE 425

Query: 481 KMS 483
           K  
Sbjct: 426 KYE 428


>gi|315453896|ref|YP_004074166.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
 gi|315132948|emb|CBY83576.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
          Length = 486

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 149/370 (40%), Gaps = 36/370 (9%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R ++ L  +++ G     ILA+TG+ GK+SV +++ QI Q   +    +G T+T+   +
Sbjct: 144 ARGYVQLAKNKILGMKNLKILAITGSFGKTSVKNYLYQILQSKHIIYSSLGSTNTLLGLS 203

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           QD     P    L     Y++  G       A+   L  H            T +G  HI
Sbjct: 204 QDINQNLPENTTL-----YIAEAGARQPGDIAAISQLLNH-------HYAVITEVGAQHI 251

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           +Y +T       K  L E    + +            E ++   +   ++     Q    
Sbjct: 252 EYFKTLDNVIKTKAELLESSRLEHAFCHHN-------EALEELISQKDKITFYPGQ---- 300

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            +++V A        + +  +   F   + G F V N  +A  +    GI    +   + 
Sbjct: 301 -VRRVQATLEGTSFELLLGEQWARFESKILGAFNVENITLAVMVGFYFGIPIDQLQRSVA 359

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRD 395
           KL+ VP R + +  N +   + +D     N L+ +L+ +R  ++  GR I+V     + D
Sbjct: 360 KLNPVPHRLQVLHLNDK---VIIDDGFNGN-LKGMLEAVRLSSLYVGRKIIVTPGLVESD 415

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
           +     +GK    + DIAI+T +     +   +   I      F++  +++E +  ++ +
Sbjct: 416 EESNTTLGKAIDQVFDIAILTGE----LNAATLGRVINRAQKIFLKDKSQLEQLLQSVTL 471

Query: 456 LNKQDVLVVA 465
               D+++ A
Sbjct: 472 AK--DLILFA 479


>gi|260551075|ref|ZP_05825279.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
 gi|260405842|gb|EEW99330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
          Length = 455

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 126/354 (35%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 113 PIVAITGSNAKSTVTTLMGLMAKDAGKKVAIGGNLG-------------------RPALD 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 154 LLKDQP-ELLVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGNMLEYHQAKHRIFQ 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
            +       +   DDA S+ ++           S G     ++   +    +    +   
Sbjct: 211 GV----KKVVFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGILRDADGTLWLARG 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L+    +  R E+V T   
Sbjct: 263 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKHFKGLEHRCEYVKT-VH 321

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I     
Sbjct: 322 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFTPLRSSIEKYAK 380

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++ +D P       +  + I G    +      EA+         +DV+++
Sbjct: 381 VVVLIGEDAP-------VIEQAIQGATKILHAATLKEAVEICQRETQAEDVVLL 427


>gi|254226619|ref|ZP_04920199.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
 gi|125620838|gb|EAZ49192.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
          Length = 506

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 145/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 84  ADKGATIFIGHEAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 143

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 144 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 194

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 195 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 239

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q T
Sbjct: 240 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFT 296

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + +    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 297 VVRKGKANLEITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 356

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 357 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 417 EQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 475 GDLVLTQGAGD 485


>gi|312970185|ref|ZP_07784367.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
 gi|310337683|gb|EFQ02794.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
          Length = 491

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIITNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPARVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|256372024|ref|YP_003109848.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008608|gb|ACU54175.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 455

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/428 (19%), Positives = 145/428 (33%), Gaps = 75/428 (17%)

Query: 67  GAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +  S+A      + +A      P+L          L A+   GK    ++AV+GT 
Sbjct: 69  GADVVAASTAIPSSNVELAAARARGVPVL------SRAELLAALTAGKQ---VVAVSGTH 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + + Q  Q + L+   +                           + L+  G + 
Sbjct: 120 GKTTTTAMIAQALQAADLAPSWV-------------------------IGAELNEAGASG 154

Query: 185 VSVEASSHGLDQHRLDG----IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +   S   ++    D     +       TNL  DH+D++ +  A   +    FE  +  
Sbjct: 155 HAGIGSLFVVEADESDATFLAVDRHLAVATNLEPDHLDHYGSFDALVAS----FEAFVGG 210

Query: 241 ESPAI-IYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGK 298
            + A  I  DD     +           L+ G  +   + ++              ++ +
Sbjct: 211 SALAPVICVDDPRLAALAPEGA------LTYGVAEAARLQIRNPVLTPTHSAFECFLDHR 264

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + G   V N   A    +++G     V   L +   V  RF+F     RG R
Sbjct: 265 RLGSIELGVLGMHNVRNGAAAVAAALSVGAPFDAVALALRRYVGVARRFQF-KRELRGAR 323

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I  DYAH    +   L+  R + SGRI+VVF            +    AL  AD  +VTD
Sbjct: 324 IIDDYAHLPGEITATLQAARQLGSGRIVVVFQPHRYSRTKLLGVELGRALGDADEVVVTD 383

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE--------------KGNRIEAIRTAIEMLNKQDVLV 463
                E+P       I G+ G +                 +R         ++   DV++
Sbjct: 384 VYAAGEEP-------IPGVSGEVVWRAAAERLGERAHWVADRGALAAFVASVVRPGDVVL 436

Query: 464 VAGKGHET 471
             G G  T
Sbjct: 437 TMGAGDVT 444


>gi|53711596|ref|YP_097588.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fragilis YCH46]
 gi|60679846|ref|YP_209990.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fragilis NCTC
           9343]
 gi|265764980|ref|ZP_06093255.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_16]
 gi|52214461|dbj|BAD47054.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides fragilis YCH46]
 gi|60491280|emb|CAH06028.1| putative UDP-N-acetylmuramate--L-alanine ligase [Bacteroides
           fragilis NCTC 9343]
 gi|263254364|gb|EEZ25798.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_16]
          Length = 464

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 140/419 (33%), Gaps = 47/419 (11%)

Query: 60  IPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           IP+A    A   +V++ A   +    T   +         +K   +  +          L
Sbjct: 63  IPEACKDKATTLVVLTPAVPQEHAELTYFRDNGF----EIQKRAQVLGTITR---SSKGL 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT GK++ ++    +  +S      +G T+ +   +++               + L 
Sbjct: 116 CVAGTHGKTTTSTMTAHLFHQS-----HVGCTAFLGGISKNYGT------------NLLL 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S    +  +EA       H L          T    DH+D + T+QAY  +    +  L+
Sbjct: 159 SSTSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTEQAYLES-FEHYTTLI 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 II    +   +V +     G ++ +        H + +   + +  +       
Sbjct: 215 QPGGALIIRKGISLQPKVKE-----GVKMYTYSRDEGDFHAENIRIGNGEIFIDFVGPDI 269

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             D     +P    + N + A  L    G+    + + +     V  RF+F   N+R   
Sbjct: 270 RIDNIQLGVPVSINIENGVAAMALAHLNGVTPEEIKQGMASFRGVDRRFDFKIKNNR-IV 328

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DYAH  + ++  + ++R      +I  VF                 +L L D  I+ 
Sbjct: 329 FLSDYAHHPSEIKQSVMSMRELYRDKKITAVFQPHLYTRTRDFYKDFADSLSLLDEVILV 388

Query: 417 DDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D  P  E P        I   +  GI   + K    E I   ++     +VL+  G G 
Sbjct: 389 DIYPAREQPIPGVSSRLIYDNLRPGIEKSMCK---KEEILDVLK-AKHIEVLITLGAGD 443


>gi|309806966|ref|ZP_07700948.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166586|gb|EFO68783.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 198

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 26/221 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                        + A   Q   A    N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  AN------AVANGAVAALWQKDHANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +      +     T ++F  +  +           L    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSK------RFNVHKTQANFNNEIGVP-------ITILEMKPTT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            +  + +     G   H  + +       T +G  HI++  
Sbjct: 155 EILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFG 195


>gi|303228392|ref|ZP_07315225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516894|gb|EFL58803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 454

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 95/296 (32%), Gaps = 24/296 (8%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS  +        + A         +     +     N+  DH+  H+T + Y  AK R+
Sbjct: 147 LSEAAYHMPEGGYLVAELSSYQLETIKSFCPLGAIVLNVTPDHLARHKTMENYAAAKARI 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F    P+    ++  DD   + + K AH+   +VLS+       H     A         
Sbjct: 207 FMNQNPEN-FVVLNDDDPIVRAMKKDAHS---KVLSISQ----HHKVDSGAYFEGNTCYA 258

Query: 294 SVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            ++GK           + G   + N L    L  A+G++   +   +E+ H V  R E V
Sbjct: 259 VLDGKATPVIDTEHIHIKGSHNIENILAVIALTYALGVEVEHIKHIIEQFHGVEHRLERV 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T           A  ++S+   L            V+   GG            I    
Sbjct: 319 TTFHDVTFYNDSKATNTDSVVKALDAF------DKPVILLAGGHDKMTPLEDFMNIVKAH 372

Query: 410 ADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +   R E        +  G+       +  EA+    ++    D++++
Sbjct: 373 TKEVIFMGEAADRFESVA-----VKMGVQHIHRAQSMKEAVALGYQLAKAGDIVLL 423


>gi|120437105|ref|YP_862791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
 gi|158512450|sp|A0M529|MURD_GRAFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|117579255|emb|CAL67724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
          Length = 445

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 139/365 (38%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS         ++ +TG++GK++V + VQ + +  G++S   G               
Sbjct: 95  EFASWFSEVP---VIGITGSNGKTTVTNLVQHLLKEGGINSGMGGNIGN----------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++ +      +E SS  LD   ++  K      TN+  DH+D +   
Sbjct: 141 --------SYAKMVAEEMHDWFVLELSSFQLD--GIEKFKPHIAILTNITPDHLDRYDYK 190

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  +K R+ E    ++      ADD    + +++      + L    + K  +   +
Sbjct: 191 LENYIASKFRIAENQTEEDYFIYD-ADDKNITDWLEKNPVRSQK-LPFSIEKKIENGAYI 248

Query: 283 CAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                 + + +++    F        L G+    NA+ A+ +   + I    + E +   
Sbjct: 249 E----NENIVVTINNTKFTMPTSELALQGKHNAKNAMAASMVSQLLRIRKQTIRESMASF 304

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V   +    +Y++ +  +N +      + ++ S  + ++   G D+     
Sbjct: 305 QGVEHRLEKVLKINN--VLYINDSKATN-VNATFYALESMESETVWIL--GGVDKGNVYD 359

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  +   +  I  +  DN      EKI +   + +   +E  +  EA++ A  + +K 
Sbjct: 360 DLLPLVNEKVKAIICLGVDN------EKIVSAFGNIVDTMVETTSMSEAVQMAYRLSDKG 413

Query: 460 DVLVV 464
           D +++
Sbjct: 414 DNVLL 418


>gi|84387794|ref|ZP_00990809.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio splendidus 12B01]
 gi|84377309|gb|EAP94177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio splendidus 12B01]
          Length = 452

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 122/363 (33%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G +   +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P          D   ++V+ R         S G  G +   K V       +  
Sbjct: 207 LV-RTVPSNGRIFSPKQDTAIEDVLSR--GCWSETESSGELGDWDAKKLVKD---GSKFE 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + +      + L G+  V NAL+A      +G+   L  E L        R EF G 
Sbjct: 261 VYFQDECVGTVDWDLVGDHNVSNALMAIAAARHVGVTPDLGCESLATFINTKRRLEFKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
            + G  +Y D+AH   ++E+ L  +R  + + +II V         +G        +L  
Sbjct: 321 VA-GVSVYDDFAHHPTAIELTLGGLRNKVDTKKIIAVLEPRSATMKRGVHKETLADSLKQ 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     ++           + ++A +   +      D ++V 
Sbjct: 380 ADSTYLFQ-------PDNIDWSVQDVADACHQPAHVSDDMDAFVARIVSEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|294497550|ref|YP_003561250.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
 gi|294347487|gb|ADE67816.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
          Length = 469

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 122/358 (34%), Gaps = 29/358 (8%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++        +    +  N  ++      +    F     G     ++ VTGT GK++ 
Sbjct: 63  VVITDHP----ELCTNLEGNIILVKTAQLEEAYWKFIEYYRGLFDLPVIGVTGTCGKTTT 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA-KALSYLSSQ-GVTHVSV 187
              ++QI                I  +       + + + +  + L+ +     V    +
Sbjct: 119 KEMIRQIL---------------IEDYKVKATWMSMNSMSVNLRYLTGIDDTTEVAVFEM 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +  G  +      +       N+G  H+   +T + Y  AK  + E L P     I+ 
Sbjct: 164 PVAYPGYLKVACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD   K V+  +H  G   +  G   +F   K +         T+  + K++D   P  
Sbjct: 224 ADDENIKRVLDVSHLQGVVYIGKGDDSQFQ-AKDIKYAKGGMAFTLKYQNKEYDAFIPGY 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VYNAL A      +G+D ++ ++ L     V    EF    +    I   +  +  
Sbjct: 283 GEHNVYNALAAIAAVFYVGVDISVAIQRLSLFEQVEEHLEFKRGLNECTVINDTWNSSPL 342

Query: 368 SLEMILKNIRTITSGRIIVVFGC-------GGDRDQGKRPIMGKIALDLADIAIVTDD 418
           S+   L  +  ++  +  +           G    +    +  K A    DI +V  D
Sbjct: 343 SMATALGVLSDMSKEKQSIALLGYMPQLGEGPYAIKQYEDMGKKAAESKIDILVVVGD 400


>gi|145297486|ref|YP_001140327.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|172044438|sp|A4SI57|MURC_AERS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|142850258|gb|ABO88579.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 484

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 138/428 (32%), Gaps = 54/428 (12%)

Query: 67  GAEAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA   V  SA      S+   S  I+ + P L+     +        + A  +  +H   
Sbjct: 64  GAHIFVGHSAEHVSEASVVVVSTAIKQDNPELLAARELRIPVVRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  I   +        PT  I                    ++ 
Sbjct: 122 -IAIAGTHGKTTTTSLVASIYAEADRD-----PTFVIGGLLNSAGTNARLGSSRY-LIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + +                ++ +    TN+  DH++ +    +   A    F  
Sbjct: 175 ADESDASFL---------------HLQPMVSIVTNIEADHMETYGGDFSKLKATFIDFLH 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
            LP    A++  DD   + ++          ++ G      + +       N+    +  
Sbjct: 220 NLPFYGLAVVCVDDPVIRGMLPEIARP---TITYGLSDDADVQVLDFVQTSNRSCFRVRR 276

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---T 351
           +   +      LPG     NA  A  +    GI    ++  L K   V  RF+  G   T
Sbjct: 277 KDAGELAVTLNLPGIHNALNAAAAIAVATEDGIGDDAIICALAKFEGVGRRFQQYGEFET 336

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                 +  DY H  + +++ +   RT     R+++VF                  L   
Sbjct: 337 GRGKAMLVDDYGHHPSEVKVTINAARTGWPDKRLVMVFQPHRYTRTRDLYEDFSDVLSKV 396

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
           D+ ++ +     E+P        +   I       P F    + + AI    +++ + D+
Sbjct: 397 DVLVMLEVYAAGEEPIPGADGRALCRSIRSRGSLEPIFAATPDDVPAILA--DLIGEGDL 454

Query: 462 LVVAGKGH 469
           ++  G G+
Sbjct: 455 VLTQGAGN 462


>gi|227082660|ref|YP_002811211.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|298500631|ref|ZP_07010435.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
 gi|227010548|gb|ACP06760.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|297540800|gb|EFH76857.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
          Length = 451

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|253564353|ref|ZP_04841810.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_2_5]
 gi|251948129|gb|EES88411.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_2_5]
          Length = 464

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 140/419 (33%), Gaps = 47/419 (11%)

Query: 60  IPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           IP+A    A   +V++ A   +    T   +         +K   +  +          L
Sbjct: 63  IPEACKDKATTLVVLTPAVPQEHAELTYFRDNGF----EIQKRAQVLGTITR---SSKGL 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT GK++ ++    +  +S      +G T+ +   +++               + L 
Sbjct: 116 CVAGTHGKTTTSTMTAHLFHQS-----HVGCTAFLGGISKNYGT------------NLLL 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S    +  +EA       H L          T    DH+D + T+QAY  +    +  L+
Sbjct: 159 SSTSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTEQAYLES-FEHYTTLI 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 II    +   +V +     G ++ +        H + +   + +  +       
Sbjct: 215 QPGGALIIRKGISLQPKVKE-----GVKMYTYSRDEGDFHAENIRIGNGEIFIDFVGPDI 269

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             D     +P    + N + A  L    G+    + + +     V  RF+F   N+R   
Sbjct: 270 RIDNIQLGVPVSINIENGVAAMALAHLNGVTPEEIKQGMASFRGVDRRFDFKIKNNR-IV 328

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DYAH  + ++  + ++R      +I  VF                 +L L D  I+ 
Sbjct: 329 FLSDYAHHPSEIKQSVMSMRELYRDKKITAVFQPHLYTRTRDFYKDFADSLSLLDEVILV 388

Query: 417 DDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D  P  E P        I   +  GI   + K    E I   ++     +VL+  G G 
Sbjct: 389 DIYPAREQPIPGVSSRLIYDNLRPGIEKSMCK---KEEILDVLK-AKHIEVLITLGAGD 443


>gi|295706370|ref|YP_003599445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
 gi|294804029|gb|ADF41095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
          Length = 449

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 117/350 (33%), Gaps = 39/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + + ++ +         G   T++    +          +   L
Sbjct: 111 APFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAGNIGTVA---CEVAQKATKDNVIVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 ++  +       NL   H+DYH T++ Y  AK  LF
Sbjct: 168 SSFQLMG-----------------IEKFRPKISLLLNLFDAHLDYHGTKEEYIKAKANLF 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                ++  A+I ADD    +             SV  Q       K   I  K +  +S
Sbjct: 211 NNQTSED-FAVINADDELVMKASADVKATKVP-FSVTAQTTEGAYIKNETIFFKDEEVMS 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         LPG+    N L A  +    G  +  +   L     V  R ++V T ++
Sbjct: 269 LKD------VVLPGKHNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVKHRVQYVTTINK 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    + ++ L      T     ++   G DR      +  +     A +  
Sbjct: 323 RKFYNDSKATNMLATKVALSAFSQPT-----ILLAGGLDRGNEFDDLKEEFKNVKA-VIT 376

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  P+ E   K       GI       N  +A+  A    +++DV+++
Sbjct: 377 FGETAPKIERVAK-----EAGIQIVKRVDNVKQAVSEAYAYSDEEDVILL 421


>gi|256788295|ref|ZP_05526726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           lividans TK24]
          Length = 475

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 144/413 (34%), Gaps = 52/413 (12%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G E IV +  +      F+A  ++  P+    +      L    L G+ P   LAVTGT+
Sbjct: 73  GTELIVTAPGWKPTKPLFTAAGQAGVPVW--GDVELAWRL--RGLNGRKPAPWLAVTGTN 128

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +GL +  +G                     ++   +    Q    
Sbjct: 129 GKTTTVQMLASILKAAGLRTAAVGNIG------------------VSLLDAVTGEQEYDV 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E      +  
Sbjct: 171 LAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYEG--NHVACV 226

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
              AD A    V       GCR +             V       +  +    K+   L 
Sbjct: 227 YNVADKATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVEGLLVDRAFVEDRQKNAQELA 286

Query: 304 ----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                  P    + NAL AAGL  A G+ +A V + L        R   V        + 
Sbjct: 287 EVSDVNPPAPHNIANALAAAGLARAFGVSAAAVRDGLRAFTPDAHRIAHVADVDGVAYVD 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A  +++ E  L    +      IV    G  +      ++   A  L    ++  D 
Sbjct: 347 DSKATNTHATEASLAAYES------IVWIAGGLAKGATFDELVAGAAKRLRGAVLIGADR 400

Query: 420 PRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVA 465
                   IR  +    P   +   +R       +A++ A  +    D +++A
Sbjct: 401 ------ALIREALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLA 447


>gi|254225932|ref|ZP_04919534.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
 gi|125621558|gb|EAZ49890.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
          Length = 451

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|120435103|ref|YP_860789.1| cyanophycin synthetase [Gramella forsetii KT0803]
 gi|117577253|emb|CAL65722.1| cyanophycin synthetase [Gramella forsetii KT0803]
          Length = 895

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 131/361 (36%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + SG     +G T++   + Q+  + +            L    +    +E + 
Sbjct: 500 LIAHIAKLSGK---LVGYTTSDGVYIQNRMVMSGDCTGPKSTELVLRDPTINFAVLECAR 556

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            GL +  L   +   G  TN+  DH+      T       K  + E + P +  AI+ AD
Sbjct: 557 GGLLRSGLAFQESDIGIVTNVEGDHLGLGGIHTIDQLARLKSVIPETVKP-DGYAILNAD 615

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISV-------- 295
           D    ++    H   C++           +K+      + AI+ +  VTI+         
Sbjct: 616 DDLVYDMR---HELRCKLALFSMDENNPRIKRFQEEGGITAIYEEGYVTITSGVWKMRVM 672

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
           + ++    F     F + N L A       GI    +   L+         PGR  F   
Sbjct: 673 KAEEIPLTFEARAHFMIQNILPAILAVHLKGISIQDMKAALQSFIPSDSQTPGRLNFF-- 730

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             R     +DYAH  + ++ + K   T T    I +    GDR +     +G IA ++ D
Sbjct: 731 KFRKFSFLLDYAHNPSGMKALQKFTDTFTESYKIGIIAGIGDRLERDTVKIGSIAAEMFD 790

Query: 412 IAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
             I+ +D + R +  + +   I  GI             +  +AI+ A +   K  ++++
Sbjct: 791 EIIIRNDRDLRGKSADHLIQLIKEGIQKIDPLKVVSLIPSETDAIKQATQKAPKNSLIIL 850

Query: 465 A 465
            
Sbjct: 851 C 851


>gi|60117246|gb|AAX14404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 143

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 86/143 (60%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +    V H+ +E+SSHG+DQ+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF E
Sbjct: 1   MRGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYE 60

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +LP+   AI+ AD      ++K A     +V++ G +G  I L +  +  N Q +T+ ++
Sbjct: 61  VLPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKID 120

Query: 297 GKDFDFLFPLPGEFQVYNALVAA 319
            + ++  FP+ G+FQ YN L A 
Sbjct: 121 NQIYNTFFPVLGKFQAYNLLCAI 143


>gi|15642397|ref|NP_232030.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|153803321|ref|ZP_01957907.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|153822230|ref|ZP_01974897.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227082523|ref|YP_002811074.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229512266|ref|ZP_04401745.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229519402|ref|ZP_04408845.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229528613|ref|ZP_04418003.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229607044|ref|YP_002877692.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae MJ-1236]
 gi|254849522|ref|ZP_05238872.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297581027|ref|ZP_06942952.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|298500240|ref|ZP_07010045.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
 gi|9656973|gb|AAF95543.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|124121139|gb|EAY39882.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|126520240|gb|EAZ77463.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227010411|gb|ACP06623.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229332387|gb|EEN97873.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229344091|gb|EEO09066.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229352231|gb|EEO17172.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229369699|gb|ACQ60122.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MJ-1236]
 gi|254845227|gb|EET23641.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297534853|gb|EFH73689.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|297540933|gb|EFH76987.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
          Length = 506

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 145/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 84  ADKGATIFIGHEAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 143

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 144 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 194

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 195 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 239

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q T
Sbjct: 240 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFT 296

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 297 VVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 356

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 357 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 417 EQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 475 GDLVLTQGAGD 485


>gi|302383799|ref|YP_003819622.1| UDP-N-acetylmuramate/alanine ligase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194427|gb|ADL01999.1| UDP-N-acetylmuramate/alanine ligase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 484

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/441 (19%), Positives = 150/441 (34%), Gaps = 65/441 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKH 113
           GH      + +G  A+V S+A    +    +      P++      +   + A  +  + 
Sbjct: 63  GHD--AAHVGEGVSAVVYSTAVKATNPEMMVARERRIPLV------RRAEMLAELMRLQF 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S V  +   +G     +     I+++  + ++           
Sbjct: 115 S---IAVGGTHGKTTTTSMVAALLDAAGFDPTVVNG-GIINAYGTNAKVGDGDW------ 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VEA        RL          TN+  +H+D++    A   A    
Sbjct: 165 -----------IVVEADESDGSFLRLKST---VAIVTNIDPEHLDHYGDFDAVRKA-FCD 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT 292
           F E +P    A +  D    + ++ +  N   R+++ G   + +    KV    +  +  
Sbjct: 210 FVENIPFYGFAAVCLDHPEVQRLVAQIDNR--RIVTYGMNPQAMVRADKVEMSPDGARFD 267

Query: 293 ISVEGKDF----------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           + ++G+            D   P+ G   V NAL A  +   + +    +   L     V
Sbjct: 268 VLIQGRGAAALEDPVRIPDLHLPMAGWHNVANALAAIAVARELDVSDDAIRAGLASFAGV 327

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQG 397
             RF   G    G RI  DY H    +  +LK  R +       GR+I V          
Sbjct: 328 KRRFTTTGV-VNGVRIVDDYGHHPVEIAAVLKAARQVAHTAEGGGRVIAVVQPHRFTRLR 386

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAIRTA--- 452
                   +   AD  IV D     E P     +  ++ GI  +     R+ A+  A   
Sbjct: 387 DLMDEFSTSFSDADSVIVADVYAAGEAPIEGVDKQALVDGIRRYGHL--RVSALENAAVL 444

Query: 453 ----IEMLNKQDVLVVAGKGH 469
                E     DV+V+ G G 
Sbjct: 445 PRVIAEEAKAGDVVVLLGAGD 465


>gi|311069478|ref|YP_003974401.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus atrophaeus 1942]
 gi|310869995|gb|ADP33470.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus atrophaeus 1942]
          Length = 432

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 134/418 (32%), Gaps = 58/418 (13%)

Query: 59  FIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F    I  G   ++  +A+     +    +    P++      KFL  +  +        
Sbjct: 53  FSADNIKAG-MTVIAGNAFPDTHPEIEKALSEGIPVI---RYHKFLGDYMKKYI------ 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AVTG  GK+S    +  + Q++  +SF IG  + + +   +      +  Y    LSY
Sbjct: 103 SVAVTGAHGKTSTTGLLAHVMQQAKPTSFLIGDGTGMGNENSEY-FVFEACEYRRHFLSY 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                                     +      TN+  DH DY       F+A    F+ 
Sbjct: 162 --------------------------QPDYAIMTNIDFDHPDYFSNIDDVFDA----FQN 191

Query: 237 L-LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + L      I   DD Y  ++     N        G +  F   + +          + V
Sbjct: 192 MALQVNKGIIACGDDEYLPKIHA---NVPVVYYGTGEENDFQ-ARNIVKNTEGTTFDVFV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +D F  P  G   V N+L    LC    ID  ++   L+    V  RF       +
Sbjct: 248 RNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDVNIIKLALQSFGGVKRRFNEKILGDQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +++ ++  R       I+ VF                 +L  AD  
Sbjct: 308 --VLIDDYAHHPTEIKVTIEAARQKFPEREIVAVFQPHTFTRTQSFLDEFAESLSAADCV 365

Query: 414 IVTDDN-PRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + D      E+  K+  A++   I           ++  A +      VL+  G G 
Sbjct: 366 YLCDIFGSARENIGKLTIADLQEKIDNAKLIDENDTSVLKAHDQA----VLIFMGAGD 419


>gi|227538299|ref|ZP_03968348.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241814|gb|EEI91829.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 457

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 121/365 (33%), Gaps = 43/365 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA++        +  +TG++GKS+       I Q++G++    G               
Sbjct: 105 EFAAQYTD---ARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGNIG------------ 149

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        ++ +      +E SS  LD   +   +       N+  DH+D +   
Sbjct: 150 -------RSFALQVAQEQFDVYVLEISSFMLDD--MYQFRADVAVILNITPDHLDRYDHK 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHL 279
            + Y ++K R+       +       D+   K + +    A    ++       G ++  
Sbjct: 201 MENYVDSKFRMIRNQTANDYFIYCLDDEETVKGLERHHTEATIWPMTQEQVINPGAYLDQ 260

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +K   I+  +     +  +D      L G+  VYN + A  +     + +  + E +   
Sbjct: 261 EKNIIINTPKGEQFIMNTED----LSLQGKHNVYNNMAAGLVAKVQELRNRSMQESMSSY 316

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +P R E V        I    A   NS+   L++         IV+   G D+     
Sbjct: 317 VNIPHRLEHVACIGGVNYINDSKATNVNSVWYALESFSPQ-----IVLIMGGVDKGNDYE 371

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +   +   +  I  +  DN R      I           +   +  +A+  A  +  K 
Sbjct: 372 MLRDLVRSKVRAIICIGKDNTR------IHESFEEDTDVIVNSSSMKDAVEIASHIAQKG 425

Query: 460 DVLVV 464
           D +++
Sbjct: 426 DTVLL 430


>gi|260427001|ref|ZP_05780980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
 gi|260421493|gb|EEX14744.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
          Length = 467

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 139/413 (33%), Gaps = 54/413 (13%)

Query: 67  GAEAIVVSSAYS----LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAV 120
           G + +VVS          +       +  + V ++   F        +     P  ++AV
Sbjct: 66  GVDRLVVSPGIPHLYPAPNAVVAAAWDAGVPVDNDIGLFFRSLGQGEWDMFDTPPRVVAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  I   SG  S   G                         L      
Sbjct: 126 TGSNGKSTTSALIHHILTSSGRDSQLAGNIG-------------------RGVLDIDPPG 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 167 DGGVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFSEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKR-----AHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVTIS 294
                +  D+A  + +  +     A +   RV S     G    +        + +    
Sbjct: 225 RCVIGV--DEAEGRYLANQMSEGAADDRVIRVSSGTRLSGPGWDVFARKGFLTEWRKGRQ 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V   D   +  LPG     NA  A     A+G+   +V         +P R + V     
Sbjct: 283 VASIDLRQVRGLPGAHNHQNACAAYAAARALGVAPRVVEAAFMSFEGLPHRSQIVAEA-- 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GG  YV+ +  +N ++  LK ++     R I     G  ++ G   +       +    I
Sbjct: 341 GGVAYVNDSKATN-VDAALKALQAFPKVRWIC---GGLMKEGGLGGLAPGFPNVVKAYVI 396

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVA 465
                       +  A    G+PG       +   A+  AI      +V+++A
Sbjct: 397 -----------GREAAGFALGLPGVEAEVCTDMETAVTRAIAEAQPGEVVLLA 438


>gi|311068041|ref|YP_003972964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
 gi|310868558|gb|ADP32033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
          Length = 451

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 124/350 (35%), Gaps = 39/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + + ++ +     +   G   T++S   +         ++   L
Sbjct: 113 AKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVAS---EVAYHADGDEWIVTEL 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                     +       N+   H+DYH +++ Y  AK  ++
Sbjct: 170 SSFQLMGTHAF-----------------RPHISLILNVFDAHLDYHHSRENYEKAKQNVY 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L +   A++  DD     + +    A     S     +     K   I    +  +S
Sbjct: 213 LHQL-ESDTAVVNQDDETVVRLAEAGKAASL-AFSATKPLERGACVKDGMILFDNEAILS 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E         LPG   + N L A  +    G  +  + + L     V  R ++V T  +
Sbjct: 271 LED------VVLPGAHNLENILAAVAVVKTAGASNEAIKKVLTSFTGVKHRLQYVTT-IQ 323

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + Y D   T+     +L   + +++    V+   GG         +     ++  I  
Sbjct: 324 DRKFYNDSKATN-----VLATSKALSAFEKPVLLLAGGLDRGNGFDELKPYMQNVKAILT 378

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ E   K+ AE+  GI       N  +A+  A  + N+ DV+++
Sbjct: 379 FGQTAPKLE---KLGAEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|327184054|gb|AEA32501.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1118]
          Length = 437

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 111/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +++ IG                P   +        
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTTYLIG---------DGRGKGVPDSRFFV------ 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 + + E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 155 ------YEADEYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G+          +       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFNDTDDFQATDIKKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  + N+     +     +    + + L        RF     +   
Sbjct: 255 GKDLGEFEIHLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      N I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLNNIADLTK-----NKNSVIVFMGAGD 425


>gi|329730007|gb|EGG66398.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU144]
          Length = 449

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 127/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  I Q+S L+    G    ++S          S  YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDIFQKSVLTGRLSGNIGYVASK---VAQEVKSDEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+T + Y NAK +++
Sbjct: 168 SSFQLLGIEEY-----------------KPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   +      Q      ++V  I+ K    + 
Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G          LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 259 FNGIRIINTKDLVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                   +  +  +     L     + S    +++ CGG     +   +     ++  +
Sbjct: 319 R------TNKYYNDSKATNTLATQFALNSFDQPIIWLCGGLDRGNEFDELIPYMENVRVM 372

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +        E  +K            I+  +  +A+    +++   DV+++
Sbjct: 373 VVF------GETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|237751715|ref|ZP_04582195.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
 gi|229373081|gb|EEO23472.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
          Length = 494

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 143/375 (38%), Gaps = 43/375 (11%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R +     ++L       I+A+TG+ GK+S+ +F+ QI Q+           +T      
Sbjct: 148 RIYAKKAHNKLQQLQNLKIIAITGSYGKTSIKNFIAQILQQQFSVYATPRSVNTYKGLVA 207

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D      +   +     Y++  G   V        L QH              +G  HI+
Sbjct: 208 DINQNINATHEI-----YIAEAGARQVGDIKEIAELLQH-------HYAVIGKIGHAHIE 255

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y +  +     K  L      + + A +  D++Y+  +  +      ++++         
Sbjct: 256 YFKNIETTTKTKFELL--YSTRLTHAFVQKDNSYANVLPPQFEANMKKIVAY-----PPK 308

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           LK + +   K   ++ ++     F   + G F + N  VA  +   +G+D   + + + K
Sbjct: 309 LKDIESTLEKTSFSLELDSVFVPFTCKILGRFNIDNIAVAIMIAKTLGMDINALQKAVAK 368

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQ 396
           L  +P R + + T  +   + +D +   N LE + + IR  ++ +GR I+V     + D+
Sbjct: 369 LTPIPHRLQRIDTAQK---VIIDDSFNGN-LEGMSEAIRLASLHNGRKIIVTPGLVEHDE 424

Query: 397 GKRPIMGKIALDLADIAIVTDD------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                + +    + DIAI+T D      +     P+KI   I+       E         
Sbjct: 425 ASNIELAQKIDKVFDIAIITGDLNAKILDTHITTPQKI---ILKDKTKLEEI-------- 473

Query: 451 TAIEMLNKQDVLVVA 465
              E   + D+++ A
Sbjct: 474 -LAESGKQNDLVLFA 487


>gi|15642537|ref|NP_232170.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587894|ref|ZP_01677650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|153817994|ref|ZP_01970661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|153822958|ref|ZP_01975625.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229507403|ref|ZP_04396908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229509672|ref|ZP_04399153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229516797|ref|ZP_04406243.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229606910|ref|YP_002877558.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254851084|ref|ZP_05240434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262154693|ref|ZP_06028819.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
 gi|9657126|gb|AAF95683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547864|gb|EAX57949.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|126511429|gb|EAZ74023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|126519528|gb|EAZ76751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229345860|gb|EEO10832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229353146|gb|EEO18085.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229354908|gb|EEO19829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229369565|gb|ACQ59988.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254846789|gb|EET25203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262030533|gb|EEY49171.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
          Length = 451

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|253988595|ref|YP_003039951.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780045|emb|CAQ83206.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus asymbiotica]
          Length = 492

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 143/421 (33%), Gaps = 51/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A  L D    I +    + V    + L+      +G      +A+ GT GK+
Sbjct: 80  ASVVVASTAI-LADNPEIIAAREARIPVIRRAEMLAELMRYRHG------IAIAGTHGKT 132

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I  ++GL    +      ++          S  YL   ++       + +  
Sbjct: 133 TTTAMISSIYAQAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 184

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +             F   LP    A++ 
Sbjct: 185 -------------HLQPMVAVVTNIEADHMDTYHGDFEKLKQTFINFLHNLPFYGRAVMC 231

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
            DD   KE++ R       + + G+ +   + +        +   T+S +   D   +  
Sbjct: 232 IDDPVVKELIPRVGR---YITTYGFSEEADVRITHYEQKGAQGYFTVSRQDMVDLKVVLN 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI  + +L  L        RF+F+G       N + G   
Sbjct: 289 APGRHNALNAAAAVAVATEEGISGSDILAALAGFQGTGRRFDFLGNFSLEHVNGKSGSAM 348

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI++VF                  L+  D  ++ 
Sbjct: 349 LVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLNQVDALLML 408

Query: 417 DDNPRSED--PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D     E   P      +   I         +       AI  A ++L+  D+++V G G
Sbjct: 409 DVYSAGEAVIPGADSRSLCRTIRSRGKLDPILVSEPEKVAIVLA-QVLDGNDLVLVQGAG 467

Query: 469 H 469
           +
Sbjct: 468 N 468


>gi|323340616|ref|ZP_08080868.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           ruminis ATCC 25644]
 gi|323091739|gb|EFZ34359.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           ruminis ATCC 25644]
          Length = 456

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 132/389 (33%), Gaps = 46/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y  +  SA +  N PI+            A R+       ++ VTGT+GK++  + +  
Sbjct: 82  PYENELISAAVERNVPIITEP-------ELAYRITE---SQLIGVTGTNGKTTTTTMIAL 131

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +  +      +      I   A            +   LS     G              
Sbjct: 132 MLNQ-NREEGKAYTCGNIGISAAKVAQEVGEKDVMVTELSSFQLMG-------------- 176

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++ ++      TN+   H DYH +++ Y  AKMR+ +    ++   ++  D    + 
Sbjct: 177 ---IEKLRPHIAVLTNIYEAHTDYHGSRENYVKAKMRIVKNQ-KEDDYFVVNWDSEEWRN 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K                +  ++K        +++              +PG   V NA
Sbjct: 233 LSKLTKAKIVPFSRQDTTEEGAYVKNGVIFFRGEEIM-------HVDEIKVPGSHNVENA 285

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +    G  +  + E L     V  R ++V T   G + Y D   T+  +E   K 
Sbjct: 286 LAAISVAKIEGQSNENIAEVLRTFSGVRHRTQYVTT-FNGRKFYNDSKATN--MEATEKA 342

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    +   +V+   G DR      ++  +   +  + +        E+  K     + G
Sbjct: 343 LSGFENP--VVLLCGGLDRGFTFERLVPYLKKHVKAMVVFGQTADLLEEAGK-----LAG 395

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       +   A+  A EM ++ D++++
Sbjct: 396 IGRIKHAKDSSAAVSAAYEMSSEGDIVLL 424


>gi|288800560|ref|ZP_06406018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332773|gb|EFC71253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 443

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 124/363 (34%), Gaps = 42/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G      G               
Sbjct: 94  EFAGRYTN---SKMICITGSNGKTTTTSLIYHIFKEAGYDVSLAGNIG------------ 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  +E SS  LD   +   +       N+  DH+D ++  
Sbjct: 139 -------KSLALQVAEAPHAYYIIEISSFQLDD--MYDFRANTAVLLNITPDHLDRYEYK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y +AKMR+ +     +S      DD  + E+ K    A     S             
Sbjct: 190 MQLYTDAKMRIIQNQTKDDSFVYWADDDVVAAELHKYNIEAQQLTFSENASNSVAACVDN 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             I  K+ V  ++          L G   +YN+L AA    A G+D   + + L     V
Sbjct: 250 GEIVVKKPVEFTMS----RAELSLLGRHNLYNSLAAALAAAANGVDVEAIKQGLRTFAGV 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E+V T +    I    A   ++    L+++ T T     ++   G D+      I 
Sbjct: 306 EHRLEYVTTANGVRYINDSKATNVDACRWALESMTTPT-----ILILGGLDKGNDYNEIK 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDV 461
             +      +  +  DN        +  E   G+     +  +  E ++   +   + D 
Sbjct: 361 QLVLDKCKALVFMGADN-------SVLHEFFDGLGLEIADTHSMKECMQECKKRAVEGDT 413

Query: 462 LVV 464
           +++
Sbjct: 414 ILL 416


>gi|160883885|ref|ZP_02064888.1| hypothetical protein BACOVA_01858 [Bacteroides ovatus ATCC 8483]
 gi|156110615|gb|EDO12360.1| hypothetical protein BACOVA_01858 [Bacteroides ovatus ATCC 8483]
          Length = 458

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 128/367 (34%), Gaps = 43/367 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T+   DH+D + T+QAY  +   
Sbjct: 155 --NLLLSQASPYTVIEADEFDRSFHWLS---PYMTVITSTDPDHLDIYGTEQAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               G    D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPGTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKLK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D  I+ D  P  E P      + I   +  GI   + K    E I   + +L  +++ ++
Sbjct: 383 DEVILVDIYPAREAPIPGVTSKLIYDNLRPGIEKSMCK---KEEI---LNILKDKNIEVL 436

Query: 464 V-AGKGH 469
           +  G G 
Sbjct: 437 ITLGAGD 443


>gi|84686334|ref|ZP_01014228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665517|gb|EAQ11993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2654]
          Length = 466

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 139/419 (33%), Gaps = 57/419 (13%)

Query: 62  QAIAQGAEAIVVSSAYSL------QDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKH 113
           +A   G  A++ S           +  +   ++  P  V ++   F       +      
Sbjct: 62  EAFE-GVAALITSPGIPHLYPETNKHIARAYKAGIP--VDNDIGLFFRSLGSGAWDEMDQ 118

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++AVTG++GKS+ ++ +  I + +G  +   G    I     D              
Sbjct: 119 PPRVVAVTGSNGKSTTSALIHHILKVAGKPAQLAG---NIGRGVLDIEPPIDG------- 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + +E SS+  D  R   +      FTNL  DH+D H     YF AK RL
Sbjct: 169 ---------EVIVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGPGGYFAAKRRL 217

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           F E  P  +   +  D+     +  +        RV+ V    K      +        +
Sbjct: 218 FAEGGPDRAVVGV--DEPEGLFLAGQLAMGPGDDRVIRVSVDEKLTGPGWLVYARKG-FL 274

Query: 292 TISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           + + +GK     D   +  LPG     NA  A  +C  +G+   ++ +       +P R 
Sbjct: 275 SETRKGKQVGSIDLRTIASLPGTHNHQNACCAYAVCRTLGLSPKVIEQAFHSFAGLPHRS 334

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           + V        +    A   ++  M L   R I      +V   G  ++ G   +   + 
Sbjct: 335 QLVAEAGGVRYVNDSKATNVDAALMALLAFRNIR----WIV--GGLQKEGGLSGLAEGLP 388

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                  I  +    + D   + A++   +   +            +      D +++A
Sbjct: 389 NVAKAYVIGREAEAFARDLGAVEAQVCTTMEAAVAAA---------MADAQSGDTVLLA 438


>gi|323190227|gb|EFZ75503.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli RN587/1]
          Length = 491

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T + ++ +        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRLDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|119026118|ref|YP_909963.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|166222958|sp|A1A2E8|MURC_BIFAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118765702|dbj|BAF39881.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 521

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 125/430 (29%), Gaps = 65/430 (15%)

Query: 82  FSATIRSNTPILVVDNTRK--------FLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           FS+ I+ + P +V  +            L+L  +       +  + V G  GK++ +S +
Sbjct: 94  FSSAIKPDNPEIVAAHEAGERIVHRSDILALLMNA------KRAVTVAGAHGKTTTSSML 147

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I   +G         +   S    +              + L        +V  +   
Sbjct: 148 AHILVNAGEGELADPSYAIGGSIQGKDG-------------AILDGGHAGKGNVLVAEAD 194

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                           TN   DH+D++ TQ  Y  A     +         I+  DD  +
Sbjct: 195 ESDGSFAKYHPQIAIITNSEADHLDHYGTQDNYRAA---FVDHAGHATKAVIMCGDDEGN 251

Query: 254 KEVMKRAHNAGC-RVLSVGYQGKF------------IHLKKVCAIHNKQQVTISVEG--- 297
             V++        R +    +               I  +   A    +  T+ + G   
Sbjct: 252 LAVLRALDATVAGRTIVYSTRNAAELGDLNGATLVRIESESETAESGAEHFTLHIPGGLI 311

Query: 298 ----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +       +PG     NA  A      +G+D       +        RF+  GT S
Sbjct: 312 GEEERRIAVTLTVPGIHNARNASAAIIAAALLGMDVERASAAVTSFLGAARRFQVRGTVS 371

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
           +   +  DYAH    +  +L   R       I V+F                 AL  AD 
Sbjct: 372 Q-VTVVDDYAHHPTEIAALLDAARRRYPQSKIRVIFQPHLFSRTRFFSSEFAQALAKADD 430

Query: 413 AIVTDDNPRSED--------PEKIRAEIIH----GIPGFIE-KGNRIEAIRTAIEMLNKQ 459
            IVT   P  E         P  I  E +         +I    +   A +  +   +  
Sbjct: 431 VIVTGIFPAREKQEDFPDVTPATIVDEALKLEHEPAKDWIRGVEDMHTAAQMMVMRAHHG 490

Query: 460 DVLVVAGKGH 469
           DV+   G G 
Sbjct: 491 DVIFTVGAGD 500


>gi|262275080|ref|ZP_06052891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Grimontia hollisae CIP 101886]
 gi|262221643|gb|EEY72957.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Grimontia hollisae CIP 101886]
          Length = 451

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 116/361 (32%), Gaps = 35/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ AS +  + +  G     +     +      +     S  ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTASMLAWVLEDCGYQPGFL--IGGVPGNFGVSARLGESMFFVVEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+                               NL  DH D      A       L 
Sbjct: 161 EYDSAFFDKRSKFVHYH------------PRTLIMNNLEFDHADIFDDLNAIKRQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +           DD  +  +             + + G+    K    + +  +  + 
Sbjct: 209 RTVPGIGRIIAPSNDDNITSTLA------MGCWSELEFAGEDGIWKAEKRVADGSEFDVW 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +GK      + L G+  V NAL+       +G+   L  + L +      R E  G + 
Sbjct: 263 FDGKPVGTVKWDLIGDHNVSNALMTVAAARHVGVTPDLACDALGRFINTKRRLEHKG-DF 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
            G  +Y D+AH   +++  L  +R     R I+                 +IA  LD AD
Sbjct: 322 NGVTVYDDFAHHPTAIKTTLAGLRAKVGDRRILAVLEPRSNTMKLGVHKDEIAPSLDDAD 381

Query: 412 IAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGK 467
           + ++         PE I     ++        +  + I+A+   I    N  DV++V   
Sbjct: 382 VVLLFQ-------PEHITWSVNDVAEACKAPAKTFDDIDALVAGIVSEANSGDVVLVMSN 434

Query: 468 G 468
           G
Sbjct: 435 G 435


>gi|229815102|ref|ZP_04445439.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
 gi|229809332|gb|EEP45097.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
          Length = 468

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 133/359 (37%), Gaps = 42/359 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           PE   A+TGT+GK++V S   ++ + SGL S  +G          D R            
Sbjct: 109 PERWCAITGTNGKTTVTSLTDELLRASGLDSVAVGNIGNAPIHEVDRR------------ 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 +G   V+  +S         +          NL  DH+ +H++ + Y  AK+R+
Sbjct: 157 -----EEGEWFVAELSSYQ---LATTEAFHPRVAVLLNLSPDHLAWHRSHENYALAKIRM 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+  +     AI+  +D      + R    G RVL +G+                  +T+
Sbjct: 209 FKN-MDDGDIAIVNVEDEGLSPYLDRICGPGRRVLHLGFADDGAADAAFVRDDV---LTV 264

Query: 294 SVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            + G +   +      + G   V NAL A+   +A G     V   L +   +P R E V
Sbjct: 265 RMAGDEHALVRVDELRIVGAHNVLNALAASAAALACGASVTGVCSGLREFKPLPHRLEPV 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T      +    A  ++++   L        G  IV+   G D+       M K+A  +
Sbjct: 325 DTVDGVRYVNDSKATNTDAVLTALAAF----DGARIVLLLGGSDKGTPLEEFMAKVASRV 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIH--GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A +          E  E++R  ++   G       E  +  +A+  A  +  + D +++
Sbjct: 381 ACVVCF------GEARERLRTALMDAPGATDIDIAEAEDLRDAVDVARSLAQRGDTVLL 433


>gi|153826877|ref|ZP_01979544.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229524386|ref|ZP_04413791.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
 gi|149739293|gb|EDM53549.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229337967|gb|EEO02984.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
          Length = 506

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 144/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 84  ADKGATIFIGHEAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 143

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 144 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 194

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 195 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 239

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+     + ++       + Q T
Sbjct: 240 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSDDADVRIENYRQNGQQGQFT 296

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 297 VVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 356

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 357 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 417 EQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 475 GDLVLTQGAGD 485


>gi|146281466|ref|YP_001171619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri A1501]
 gi|145569671|gb|ABP78777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           stutzeri A1501]
          Length = 447

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 126/374 (33%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R          L  +    I+A+TG++ KS+V + V ++   +G +    G  
Sbjct: 84  ALQEAAARGVKLSGDIELLAREAKAPIVAITGSNAKSTVTTLVGEMAAAAGRTVAVGGNL 143

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T +     + +                        +E SS  L+    + +     +  
Sbjct: 144 GTPALDLLADDVDL--------------------YVLELSSFQLE--TTEQLNAEVATCL 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++  DD  S+ ++           + 
Sbjct: 182 NISEDHMDRYSGLPAYHQAKHRIFRG----ARQVVVNRDDRLSRPLVGE----DVPTWTF 233

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +     ++ +    E         + G     NAL A  L  A+G+   
Sbjct: 234 GLGKPDFKGFGLFEEKGEKYLAFQFEALMPVRELKMRGAHNQSNALAALALGHAVGLPFG 293

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L+ L +   +P R ++VG  + G   Y D   T+    +             +V+   
Sbjct: 294 PMLDTLRRFTGLPHRCQWVGERA-GVSYYDDSKATNVGAALAAIEGLGADIDGKLVLIAG 352

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G  +      +   +A     + ++  D PR         E +      I   +  EA++
Sbjct: 353 GDGKGADFSALRAPVARYCRAVVLLGRDAPR-------LDEALGEAAVLIRVASLEEAVQ 405

Query: 451 TAIEMLNKQDVLVV 464
            A E     D +++
Sbjct: 406 RAAECAEPGDAVLL 419


>gi|260900699|ref|ZP_05909094.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308110245|gb|EFO47785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 452

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 124/360 (34%), Gaps = 29/360 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R      +     + G+    +    + +  +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQALADVLERGCWTEKQ-----FSGEDGDWQAHKLVLDGSKFD 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++++G+      + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VALQGEKVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
             +G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 E-QGITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      + I  +     P F++   +   A    +E     D ++V   G
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQCKQ--PAFVDADIDNFVA--KIVERAQPGDQILVMSNG 435


>gi|23098924|ref|NP_692390.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Oceanobacillus iheyensis HTE831]
 gi|30316035|sp|Q8ER50|MURD_OCEIH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22777152|dbj|BAC13425.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oceanobacillus
           iheyensis HTE831]
          Length = 449

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 145/409 (35%), Gaps = 54/409 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPI----LVVDNTRKF------LSLFASRLYGKHPEN 116
           GAE ++ S   S+ D    I  N  I    ++V+  ++              L  +    
Sbjct: 56  GAELVLGSHPISVLDGKDLIVKNPGIRYDNVIVEEAQRRGIPVISEVELVHYLTNQP--- 112

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++  + + ++  RS +S    G    +++   +   +  S   +   LS 
Sbjct: 113 VIGITGSNGKTTTTTLITEMLDRSNVSVKVAGNIGVVAT---EVASSLQSDEKMVMELSS 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG                 +D ++       NL   H+DYH + + Y  AK  +F+ 
Sbjct: 170 FQLQG-----------------IDQLQFSTAVLLNLFEAHLDYHGSFENYVEAKCNIFKS 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K    I  ADD      +K A        S               ++ K +  I++ 
Sbjct: 213 Q-NKHDYLIYNADDDNVSAAIKTAEATKVP-FSSSRPLADGAWMDDDFLYYKDEKIIAIR 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L G+  + N L A       G  +  +++ L     V  R EFVG    G 
Sbjct: 271 D------IVLVGKHNMENILAAIATAKLNGATNEGIVQVLTTFSGVKHRLEFVGV-INGR 323

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            IY D   T+  +    K +        +V+   G DR      ++  +    A +    
Sbjct: 324 YIYNDSKATN--ILATKKALAAFNKN--VVLLAGGLDRGNTFEELIPYLHHVKAMVVF-- 377

Query: 417 DDNPRSEDPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 E   K++   +   IP   +  +   A+  A  + ++QD +++
Sbjct: 378 -----GETAGKLKDAGVAANIPVIEKALDVQHAVEVAFALTDEQDTILL 421


>gi|320334318|ref|YP_004171029.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
 gi|319755607|gb|ADV67364.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
          Length = 937

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 140/382 (36%), Gaps = 36/382 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GKS+ +  V  I + +G     +G T++   +     + T        A  
Sbjct: 524 PIISITGTNGKSTTSRMVAHIMRHAGKV---VGLTTSNGIYVNGELIMTGDTTGPKSAKV 580

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
            LS   V    +E +  G+ +  L   +   G+  N+  DH+     +T +     K  L
Sbjct: 581 ILSDPNVEVAVLETARGGILREGLAFDRADVGAVLNIQPDHLGVKGIKTVEDLAWVKG-L 639

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----------YQGKFIHLKKVC 283
             E++     +++ ADD  +  +  +A          G          +           
Sbjct: 640 VVEVVTDTGTSVLNADDPLTLAMRAKAKGRVTFFSMRGGIAVSPELQQHINDGGTAVVRE 699

Query: 284 AIHNKQQVTISVEG--------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                 ++ +  +G        +D         E  + NAL AA + +A G++  ++   
Sbjct: 700 PTVLGDELVLYEDGQRLPIMRARDIPATLGGFAEVNIANALAAAAMAVAQGVELPVIRAA 759

Query: 336 LEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCG 391
           L        +             R+ +DYAH  + LE +   ++ +    GR+I V G  
Sbjct: 760 LGSFSTSFEQSPGRLNLYEGHPFRVLLDYAHNPSGLEYLRDLVQHMRPRRGRVIGVVGVA 819

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGF-------IEKG 443
           GDR       MG+IA +  D  I+ +D   R   P +    +  G               
Sbjct: 820 GDRRDDDMRRMGEIAAEAFDEIIIREDELRRGRAPGEGARLVAEGARSAGFADEHLTTIL 879

Query: 444 NRIEAIRTAIEMLNKQDVLVVA 465
           +  +A+  A+    + D++V+ 
Sbjct: 880 SEPDAVDHALRAARQGDLVVLL 901


>gi|28897088|ref|NP_796693.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363959|ref|ZP_05776698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260896370|ref|ZP_05904866.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|28805297|dbj|BAC58577.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085196|gb|EFO34891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308112565|gb|EFO50105.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 452

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 124/359 (34%), Gaps = 27/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R      +     + G+    +    + +  +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQALTDVLERGCWTEKQ-----FSGEDGDWQAHKLVLDGSKFE 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++++G+      + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VALQGEKVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
             +G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 E-QGITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      + I  +     P F++  +    +   +E     D ++V   G
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQCKQ--PAFVD-ADMDNFVAKIVERAQPGDQILVMSNG 435


>gi|110640304|ref|YP_668032.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 536]
 gi|191174588|ref|ZP_03036082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300984513|ref|ZP_07177005.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|123148432|sp|Q0TLP8|MURC_ECOL5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110341896|gb|ABG68133.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli 536]
 gi|190905135|gb|EDV64780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300306682|gb|EFJ61202.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|324012254|gb|EGB81473.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 60-1]
          Length = 491

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMHVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|229513465|ref|ZP_04402929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
 gi|229521606|ref|ZP_04411024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229341200|gb|EEO06204.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229349342|gb|EEO14298.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
          Length = 451

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|153215192|ref|ZP_01949873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|153825779|ref|ZP_01978446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
 gi|124114837|gb|EAY33657.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|149740502|gb|EDM54617.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
          Length = 451

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|295098595|emb|CBK87685.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 491

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 135/407 (33%), Gaps = 48/407 (11%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D    + ++   + V    + L+      +G      +AV GT GK++  + V  I   +
Sbjct: 91  DNPEIVAAHEARIPVIRRAEMLAELMRFRHG------IAVAGTHGKTTTTAMVSSIYAEA 144

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           GL    +      ++        +         ++       + +               
Sbjct: 145 GLDPTFVNGGLVKAAGVHARLGHS------RYLIAEADESDASFL--------------- 183

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E++ R 
Sbjct: 184 HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV 243

Query: 261 HNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318
                ++ + G+ +   + ++    I  +   T++ + KD        PG     NA  A
Sbjct: 244 GR---QITTYGFSEDADVRVEDYKQIGAQGHFTLARQDKDLLHVTLNAPGRHNALNAAAA 300

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--RIYVDYAHTSNSLE 370
             +    GID   +L  LE       RF+F+G       N + G   +  DY H    ++
Sbjct: 301 VAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKPGSAMLVDDYGHHPTEVD 360

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP---- 425
             +K  R       ++++F                  L   D  ++ D     E P    
Sbjct: 361 ATIKAARAGWPEKNLVMIFQPHRYTRTRDLYDDFANVLSQVDTLLMLDVYAAGETPIPGA 420

Query: 426 --EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               +   I   G    I   +  +       +L   D++++ G G+
Sbjct: 421 DSRSLCRTIRGRGKVDPILVPDPAQVAEMLAPVLTGNDLILIQGAGN 467


>gi|16128084|ref|NP_414633.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89106974|ref|AP_000754.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170021553|ref|YP_001726507.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ATCC 8739]
 gi|170079730|ref|YP_001729050.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188495590|ref|ZP_03002860.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|238899492|ref|YP_002925288.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|254037506|ref|ZP_04871583.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|256025405|ref|ZP_05439270.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia sp. 4_1_40B]
 gi|300905500|ref|ZP_07123264.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300919646|ref|ZP_07136137.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300923127|ref|ZP_07139187.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300949891|ref|ZP_07163854.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300955957|ref|ZP_07168290.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|301028574|ref|ZP_07191804.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|301303808|ref|ZP_07209928.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|301330128|ref|ZP_07222797.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301646403|ref|ZP_07246285.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|307136692|ref|ZP_07496048.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli H736]
 gi|331640544|ref|ZP_08341692.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|127536|sp|P17952|MURC_ECOLI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028987|sp|B1IR87|MURC_ECOLC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620033|sp|B1XC68|MURC_ECODH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509769|sp|C4ZRI6|MURC_ECOBW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|40859|emb|CAA38868.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli]
 gi|42056|emb|CAA36868.1| (UDP-N-acetylmuramate: L-alanine ligase) (AA 1-491) [Escherichia
           coli]
 gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|21321972|dbj|BAB96659.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169756481|gb|ACA79180.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli ATCC 8739]
 gi|169887565|gb|ACB01272.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188490789|gb|EDU65892.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|226840612|gb|EEH72614.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|238863750|gb|ACR65748.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|260450702|gb|ACX41124.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli DH1]
 gi|299878385|gb|EFI86596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|300317177|gb|EFJ66961.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|300402650|gb|EFJ86188.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300413286|gb|EFJ96596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300420582|gb|EFK03893.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300450723|gb|EFK14343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300840935|gb|EFK68695.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|300843875|gb|EFK71635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301075373|gb|EFK90179.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|309700302|emb|CBI99590.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli ETEC H10407]
 gi|315134785|dbj|BAJ41944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli DH1]
 gi|315253165|gb|EFU33133.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 85-1]
 gi|315616130|gb|EFU96749.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 3431]
 gi|323939869|gb|EGB36069.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E482]
 gi|331040290|gb|EGI12497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|228660|prf||1808265A murC gene
          Length = 491

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPARVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|331645201|ref|ZP_08346312.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
 gi|330909938|gb|EGH38448.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli AA86]
 gi|331045958|gb|EGI18077.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
          Length = 491

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATICFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|288904810|ref|YP_003430032.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
 gi|288731536|emb|CBI13091.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
          Length = 451

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 140/429 (32%), Gaps = 62/429 (14%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G   D +      + +G + I  S    L D +  +    P +  DN      + A  + 
Sbjct: 40  GKPFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNP-----MVARAIE 94

Query: 111 GKHP-------------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
              P               I+ +TG++GK++  + + +     G S    G    I   A
Sbjct: 95  KNIPVITEVELAYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKSGLLSG---NIGFPA 151

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +   T      L   LS     G                  D         TNL   HI
Sbjct: 152 SEVAQTATDKDILVMELSSFQLMG-----------------TDIFHPHIAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  + + +   +   + +  D   +   K          +    G ++
Sbjct: 195 DYHGTFEEYVAAKWNIQKNMTADDFVVLNFNQDLAKELAQKTVAKVVPFSTTEKVDGAYL 254

Query: 278 HLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                         T+  +G+         +PG   V NAL    +    GI +  + E 
Sbjct: 255 DGD-----------TLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIANDAIKET 303

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     V  R + +G    G + Y D   T+  +    K +        +++   G DR 
Sbjct: 304 LTHFGGVKHRLQALG-EINGVKFYNDSKSTN--ILATQKALSGF-ENSKVILIAGGLDRG 359

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                ++  I      + I+ +  PR +     RA     +P +++  +  +A R A + 
Sbjct: 360 NEFDELVPDITGVKL-MVILGESAPRVK-----RAADKANVP-YVDAKDVADAARIAYDK 412

Query: 456 LNKQDVLVV 464
               DV+++
Sbjct: 413 AEAGDVVLL 421


>gi|149918773|ref|ZP_01907260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
 gi|149820374|gb|EDM79790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
          Length = 482

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 166/464 (35%), Gaps = 38/464 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I     DSR    G +FV IV  + DGH FIP A+A GA A +V          A   
Sbjct: 22  RPIQAAFIDSRTPTPGGLFVPIVAAR-DGHDFIPAALAAGASATLVGPGR----GEAVPE 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  ++ V +T + L+  A     +    ++A+TG++GK++  +FV+   + +       
Sbjct: 77  GDFTVVEVGDTLEGLTQLARDARAQLDGPVVAITGSNGKTTTRAFVEAALRTAFDP---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               T  +F          P+ L   ++         + +  S+ G + H          
Sbjct: 133 -LICTQGNF----NNHLGLPLTLVGGVAGTEPPRAAVLELGMSAPGENDHLAQVAGPSVH 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--HNAGC 265
             T++  +H+++  + +A   A+      L        +         ++      ++G 
Sbjct: 188 VITSIALEHLEFMGSLEAIAAAEAEPLAHLRASGGHRPLAVLPGDEPALVPHLPGPDSGL 247

Query: 266 RVLSVGYQGKFIHLKKVCAI-----HNKQQVTISVEGKD------FDFLFPLPGEFQVYN 314
           RVL  G     I      AI       + +  + + G+D              G     N
Sbjct: 248 RVLRFGSPDAAIGAPLDVAIVAVEVGARTRAVLRLRGEDGQEDRALSLSLRTFGAHNARN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEM 371
           A  A  +   +G+D   V   LE +  V  R   +     G     I   Y     S+  
Sbjct: 308 AAAAVAVAAHLGLDLDAVARALEAVEPVGDRGRLLELELGGHTHALIADCYNANPGSMSA 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEKIR 429
            L ++  +  G  + V G   +    +  +  ++  + A + I  V    PR+    +  
Sbjct: 368 ALGSL-AMLDGPRVAVLGDMLELGPDEDALHREVGTEAARLGIDAVLGVGPRARAIAEAA 426

Query: 430 AEIIHGIPGFIEKGNRI-EA---IRTAIEML-NKQDVLVVAGKG 468
           A+   G+     + + + EA   IR  +E       VL  A +G
Sbjct: 427 ADAKPGLVAHAVERDAVDEACAWIRARLEGASEPGAVLFKASRG 470


>gi|294501021|ref|YP_003564721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
 gi|294350958|gb|ADE71287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
          Length = 449

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 117/350 (33%), Gaps = 39/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + + ++ +         G   T++    +          +   L
Sbjct: 111 APFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAGNIGTVA---CEVAQKATKDNVIVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 ++  +       NL   H+DYH T++ Y  AK  LF
Sbjct: 168 SSFQLMG-----------------IEKFRPKISLLLNLFDAHLDYHGTKEEYIKAKANLF 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                ++  A+I ADD    +             SV  Q       K   I  K +  +S
Sbjct: 211 NNQTSED-FAVINADDELVMKASADVKATKVP-FSVTAQTTEGAYIKNETIFFKDEEVMS 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         LPG+    N L A  +    G  +  +   L     V  R ++V T ++
Sbjct: 269 LKD------VVLPGKHNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVKHRVQYVTTINK 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    + ++ L      T     ++   G DR      +  +     A +  
Sbjct: 323 RKFYNDSKATNMLATKVALSAFSQPT-----ILLAGGLDRGNEFDDLKEEFKNVKA-VIT 376

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  P+ E   K       GI       N  +A+  A    +++DV+++
Sbjct: 377 FGETAPKIERVAK-----EAGIQIVKRVDNVKQAVSEAYACSDEEDVILL 421


>gi|154488891|ref|ZP_02029740.1| hypothetical protein BIFADO_02200 [Bifidobacterium adolescentis
           L2-32]
 gi|154083028|gb|EDN82073.1| hypothetical protein BIFADO_02200 [Bifidobacterium adolescentis
           L2-32]
          Length = 521

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 123/430 (28%), Gaps = 65/430 (15%)

Query: 82  FSATIRSNTPILVVDNTRK--------FLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           FS+ I+ + P +V  +            L+L  +       +  + V G  GK++ +S +
Sbjct: 94  FSSAIKPDNPEIVAAHEAGERIVHRSDILALLMNA------KRAVTVAGAHGKTTTSSML 147

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I   +G         +   S    +              + L        +V  +   
Sbjct: 148 AHILVNAGEGELADPSYAIGGSIQGKDG-------------AILDGGHAGKGNVLVAEAD 194

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                           TN   DH+D++ TQ  Y  A     +         I+  DD  +
Sbjct: 195 ESDGSFAKYHPQIAIITNSEADHLDHYGTQDNYRAA---FVDHAGHATKAVIMCGDDEGN 251

Query: 254 KEVMKRAHNAGC-RVLSVGYQGKF------------IHLKKVCAIHNKQQVTISVEG--- 297
             V++        R +    +               I  +   A    +  T+ + G   
Sbjct: 252 LAVLRALDATVAGRTIVYSTRNAAELGDLNGATLVRIESESETAESGAEHFTLHIPGGLI 311

Query: 298 ----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +       +PG     NA  A      +G+D       +        RF+  GT S
Sbjct: 312 GEEERRIAVTLTVPGIHNARNASAAIIAAALLGMDVERASAAVTSFLGAARRFQVRGTVS 371

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
           +   +  DYAH    +  +L   R       I V+F                 AL  AD 
Sbjct: 372 Q-VTVVDDYAHHPTEIAALLDAARRRYPQSKIRVIFQPHLFSRTRFFSSEFAQALAKADD 430

Query: 413 AIVTDDNPRSED--------PEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQ 459
            IVT   P  E         P  I  E +               +   A +  +   +  
Sbjct: 431 VIVTGIFPAREKQEDFPDVTPATIVDEALKLEHEPAKDWVRGVEDMHTAAQMMVMRAHHG 490

Query: 460 DVLVVAGKGH 469
           DV+   G G 
Sbjct: 491 DVIFTVGAGD 500


>gi|194290727|ref|YP_002006634.1| udp-N-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
 gi|193224562|emb|CAQ70573.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
          Length = 462

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 121/361 (33%), Gaps = 31/361 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++  S +  I + +G +   +     +    Q+  ++           + 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILEDAGYNPGFL-----VGGVPQNFGIS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           ++      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 VTESDFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P +   ++   +     V++R   +      VG   +     +  A   K    + 
Sbjct: 208 VRTVPGQGRIVVNGVEESLARVLERGCWSEVEQFGVG-DWRESDAARTPAAPGKDAFDVW 266

Query: 295 V-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +      ++ L G     NAL A G    +G+ +A  +E L +   V  R E  G   
Sbjct: 267 FGDAVAGTVVWDLQGTHNRMNALAAIGAARHVGVPAAQAIESLSRFANVKRRMEVRGVAG 326

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLAD 411
            G  +Y D+AH   +++  L  +R       I+              +  +   +L+ AD
Sbjct: 327 -GVTVYDDFAHHPTAIQTTLDGLRRRVGNARILAVLEPRSNTMKLGVMKAQLPASLEQAD 385

Query: 412 IAIVT----DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +          +    D  +  A +      F + G  ++A+R A       D ++V   
Sbjct: 386 LVFGYGAPAGKDALGWDLAEALAPLGATATAFQDLGTLVQAVRAA---AQPGDHVLVMSN 442

Query: 468 G 468
           G
Sbjct: 443 G 443


>gi|319401523|gb|EFV89733.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis FRI909]
          Length = 449

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 156/433 (36%), Gaps = 65/433 (15%)

Query: 51  GNKE---DGHLFIPQAIAQ-----GAEAIVVSSAYSLQDFSATI--RSNTPI---LVVDN 97
           G      DG+     A A+     G E I  S  +SL D    I      P    ++ + 
Sbjct: 32  GANVKVNDGNDLSQDAHAKDLESMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIEEA 91

Query: 98  TRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            ++ L +      S L  + P  I+AVTGT+GK++V S +  + Q+S L+    G    +
Sbjct: 92  AKRGLKILTEVELSYLISEAP--IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYV 149

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +S   +      S  YL   LS     G+                    K      TN+ 
Sbjct: 150 AS---NVAQEVKSDEYLITELSSFQLLGIEKY-----------------KPHIAIITNIY 189

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             H+DYH+T + Y NAK ++++     +     Y    Y +  +  + N   +      Q
Sbjct: 190 SAHLDYHETLENYQNAKKQIYKNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQ 244

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                 ++V  I+ K    +   G          LPGE  + N L A    I  G+    
Sbjct: 245 ------QEVDGIYIKDGFIV-FNGIRIINTKDLVLPGEHNLENILAAVLASIIAGVPVKA 297

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +++ L     +  R +++GTN        +  +  +     L     + S    +++ CG
Sbjct: 298 IVDSLVTFSGIDHRLQYIGTNR------TNKYYNDSKATNTLATQFALNSFDQPIIWLCG 351

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           G     +   +     ++  + +        E  +K            I+  +  +A+  
Sbjct: 352 GLDRGNEFDELIPYMENVRVMVVF------GETQDKFAKLGNSQGKYVIKATDVEDAVDK 405

Query: 452 AIEMLNKQDVLVV 464
             +++   DV+++
Sbjct: 406 IQDIVEPNDVVLL 418


>gi|319651887|ref|ZP_08006010.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2]
 gi|317396379|gb|EFV77094.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2]
          Length = 431

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 133/404 (32%), Gaps = 53/404 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +AY              + VV    +FL  F            +AVTG  GK+S  
Sbjct: 64  VIAGNAYPDTHEEIEEAMKLGLPVV-RYHRFLGDFMKNF------TSIAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + + +  +SF IG  +                    K   Y   +   +      
Sbjct: 117 GLLAHVMRGAKPTSFLIGDGTGKGD----------------KEAEYFVFEACEYRR---- 156

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYAD 249
            H L  +            TN+  DH DY    +  F+A    F+E+  +         D
Sbjct: 157 -HFLSYY------PDYAIMTNIDFDHPDYFANIEDVFSA----FQEMSWQVNKGIFACGD 205

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
           D   +++  +           G    F   + V          + V    F+ F  P  G
Sbjct: 206 DEQLQKIQAKVP---VVFYGFGEDNDFQ-ARNVVKTTEGTTFDVFVRNTFFETFSIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V N+L    LC    ID+ +V E L     V  RF      S+   I  DYAH    
Sbjct: 262 DHNVLNSLAVIALCHYEEIDAKIVQEQLLSFEGVKRRFSEKKVGSQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPE 426
           ++  ++  R       ++ VF                 +L+LAD   + +      E+  
Sbjct: 320 IKATVEAARQKYPEKDVVAVFQPHTFTRTQAFLDDFASSLNLADKVYLCEIFGSARENHG 379

Query: 427 KI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           K+   ++   IP   +  N  E   TA+   ++  V++  G G 
Sbjct: 380 KLTIDDLKAKIPNA-QILNEEE---TAVLRNHEDSVIMFMGAGD 419


>gi|315038910|ref|YP_004032478.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1112]
 gi|312277043|gb|ADQ59683.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1112]
          Length = 437

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 111/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +++ IG                P   +        
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTTYLIG---------DGRGKGVPDSRFFV------ 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 + + E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 155 ------YEADEYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G+          +       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFNDTDDFQATDIKKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  + N+     +     +    + + L        RF     +   
Sbjct: 255 GKDLGEFEIHLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      N I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLNNIADLTK-----NKNSVIVFMGAGD 425


>gi|262280678|ref|ZP_06058461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257578|gb|EEY76313.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 455

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 126/354 (35%), Gaps = 44/354 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++ KS+V + +  + + +G      G                        AL 
Sbjct: 113 PIVAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLG-------------------RPALD 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  Q    + +E SS  L+      +        N+  DH+D H     Y  AK R+F+
Sbjct: 154 LLKDQP-ELLVLELSSFQLE--TTSHLNAEVAVVLNMSEDHLDRHGDMWGYHQAKHRIFQ 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTIS 294
            +       I   DDA S+ ++           S G     ++   V    +    +   
Sbjct: 211 GV----KKVIFNRDDALSRPLVPDTTPMQ----SFGLNAPDLNQYGVLRDGDGTLWLARG 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++         + G   V NAL    L  AIG+    +LE L++   +  R EFV T   
Sbjct: 263 LQRLIKSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFTGLEHRCEFVKT-VD 321

Query: 355 GGRIYVDYAHTS--NSLEMI--LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             R Y D   T+   +L  I  L     +  G++ ++   G  + Q   P+   I    A
Sbjct: 322 DVRYYNDSKGTNVGATLAAIDGLGAAIEVKKGKVALIL-GGQGKGQDFAPLRSSI-EKYA 379

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++       ED   I   I  G    +      EA+         +DV+++
Sbjct: 380 KVVVLI-----GEDASVIEQAI-QGTTKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|145633131|ref|ZP_01788863.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145635590|ref|ZP_01791288.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148826248|ref|YP_001291001.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229844906|ref|ZP_04465044.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
 gi|166224693|sp|A5UCW7|MURC_HAEIE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|144986357|gb|EDJ92936.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145267152|gb|EDK07158.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148716408|gb|ABQ98618.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229812287|gb|EEP47978.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
          Length = 475

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 127/376 (33%), Gaps = 40/376 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA      +  A+ +   P++      +   + A  +  +H
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I  ++ L    +      S+          +  YL   
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D ++       A    
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +             Q  +                I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
               +  + L  +PG+    NA  A  +    GID+  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAIAKEEGIDNEAILEALADFQGAGRRFDQLGEFI 334

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +   R+  DY H    + + +K  R      RI+++F                  L  
Sbjct: 335 RPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGEAP 410


>gi|332295506|ref|YP_004437429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178609|gb|AEE14298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 464

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 131/398 (32%), Gaps = 44/398 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I+ S    L            I VV        L    +      N + VTGT+GK+
Sbjct: 74  ASWIIKSPGVPLNLEFFEFARKKNIPVVGELDLVFGLLPDGV------NTIGVTGTNGKT 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V  ++    + + +  +  G   T                     LS +    VT  ++
Sbjct: 128 TVTEWIGYGFEVAKMPYYVAGNVGT--------------------PLSEIIYDIVTGSNL 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +K      TNL  DHID +     YFNAK+ LF+    +   +I  
Sbjct: 168 VLELSSYQIENSIFLKPKIAMITNLTLDHIDRYANLDEYFNAKVHLFKN--QENGYSIYN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKDFDFL-FP 305
            DD Y ++ +K       ++L+V  +  F     +   I  K  +      K  D     
Sbjct: 226 KDDPYLEKNIKNL-TLKTKILNVSKRKDFSIAGVIENKIFVKDNLDFV---KIIDLSDLS 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GE  + NAL  A       ++   + + L     V  R E   T+     I    +  
Sbjct: 282 LKGEHNIENALFVASSLYLSSVEPKHIEKALSTFSGVEHRQERFYTHKGITWINDSKSTN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S  + LK      +  +I++   G D++     ++   +     I +  +   R  D 
Sbjct: 342 PESTIVALKTWGE--NNNLILIL-GGKDKNTPLDELVSLASKTCKAIILFGEAKKRFFDH 398

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                      P      +  + I  A E+    D+++
Sbjct: 399 -------FKSFPNLFVLNSLDDVIDKAFELAKPNDIVL 429


>gi|237720379|ref|ZP_04550860.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_2_4]
 gi|229450130|gb|EEO55921.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_2_4]
          Length = 466

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 123/370 (33%), Gaps = 49/370 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T+   DH+D + T+QAY  +   
Sbjct: 155 --NLLLSQTSPYTVIEADEFDRSFHWLS---PYMTVITSTDPDHLDIYGTEQAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--------- 461
           D  I+ D  P  E P       I G+   +   N    I     M  K+D+         
Sbjct: 383 DEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEDILNILKDKNI 433

Query: 462 -LVV-AGKGH 469
            +++  G G 
Sbjct: 434 EVLITLGAGD 443


>gi|15799775|ref|NP_285787.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           EDL933]
 gi|15829349|ref|NP_308122.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. Sakai]
 gi|26246024|ref|NP_752063.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli CFT073]
 gi|91209155|ref|YP_539141.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UTI89]
 gi|157154862|ref|YP_001461261.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli E24377A]
 gi|157159562|ref|YP_001456880.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli HS]
 gi|168751399|ref|ZP_02776421.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755699|ref|ZP_02780706.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764030|ref|ZP_02789037.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771315|ref|ZP_02796322.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776935|ref|ZP_02801942.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781976|ref|ZP_02806983.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789618|ref|ZP_02814625.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801518|ref|ZP_02826525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|170683694|ref|YP_001742213.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SMS-3-5]
 gi|193065876|ref|ZP_03046937.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|193070828|ref|ZP_03051761.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194429353|ref|ZP_03061878.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194434422|ref|ZP_03066684.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194439419|ref|ZP_03071496.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|195939307|ref|ZP_03084689.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806463|ref|ZP_03248800.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812324|ref|ZP_03253653.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819975|ref|ZP_03260295.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400617|ref|YP_002268699.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215485257|ref|YP_002327688.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217325189|ref|ZP_03441273.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552674|ref|YP_002385587.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI1]
 gi|218557031|ref|YP_002389944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli S88]
 gi|218687968|ref|YP_002396180.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ED1a]
 gi|218693560|ref|YP_002401227.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 55989]
 gi|237704240|ref|ZP_04534721.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|253774879|ref|YP_003037710.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160213|ref|YP_003043321.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|254791228|ref|YP_003076065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|256020071|ref|ZP_05433936.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sp. D9]
 gi|260842327|ref|YP_003220105.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260866244|ref|YP_003232646.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261226848|ref|ZP_05941129.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255252|ref|ZP_05947785.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291280916|ref|YP_003497734.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|293417967|ref|ZP_06660589.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|293476751|ref|ZP_06665159.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|297518216|ref|ZP_06936602.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli OP50]
 gi|300816129|ref|ZP_07096352.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|300821904|ref|ZP_07102048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300931782|ref|ZP_07147082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300938486|ref|ZP_07153226.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300981128|ref|ZP_07175374.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|301048483|ref|ZP_07195508.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|306815311|ref|ZP_07449460.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|312966219|ref|ZP_07780445.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|331661137|ref|ZP_08362069.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331666328|ref|ZP_08367209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331680665|ref|ZP_08381324.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332281221|ref|ZP_08393634.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|54037856|sp|P65471|MURC_ECO57 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041506|sp|P65470|MURC_ECOL6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122425020|sp|Q1RGA4|MURC_ECOUT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017280|sp|A7ZHI2|MURC_ECO24 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017281|sp|A7ZW43|MURC_ECOHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706321|sp|B5YZC7|MURC_ECO5E RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711864|sp|B7MAL4|MURC_ECO45 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711866|sp|B7M134|MURC_ECO8A RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711868|sp|B1LG28|MURC_ECOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766001|sp|B7UIE1|MURC_ECO27 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766002|sp|B7LFW1|MURC_ECO55 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766003|sp|B7MNV0|MURC_ECO81 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12512797|gb|AAG54395.1|AE005186_1 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Escherichia coli O157:H7 str. EDL933]
 gi|26106421|gb|AAN78607.1|AE016755_107 UDP-N-acetylmuramate--alanine ligase [Escherichia coli CFT073]
 gi|13359551|dbj|BAB33518.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli O157:H7 str.
           Sakai]
 gi|91070729|gb|ABE05610.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli UTI89]
 gi|157065242|gb|ABV04497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli HS]
 gi|157076892|gb|ABV16600.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E24377A]
 gi|170521412|gb|ACB19590.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli SMS-3-5]
 gi|187767764|gb|EDU31608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014538|gb|EDU52660.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000410|gb|EDU69396.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357039|gb|EDU75458.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359896|gb|EDU78315.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365892|gb|EDU84308.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370793|gb|EDU89209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376362|gb|EDU94778.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|192926463|gb|EDV81096.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|192955858|gb|EDV86328.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194412573|gb|EDX28870.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194417338|gb|EDX33445.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194421678|gb|EDX37688.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|208726264|gb|EDZ75865.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733601|gb|EDZ82288.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740098|gb|EDZ87780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162017|gb|ACI39450.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746534|gb|ACI71574.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746536|gb|ACI71575.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746538|gb|ACI71576.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746540|gb|ACI71577.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746542|gb|ACI71578.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|215263329|emb|CAS07644.1| UDP-N-acetylmuramate: L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217321410|gb|EEC29834.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350292|emb|CAU95975.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli 55989]
 gi|218359442|emb|CAQ96980.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI1]
 gi|218363800|emb|CAR01460.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli S88]
 gi|218425532|emb|CAR06315.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli ED1a]
 gi|222031922|emb|CAP74660.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli LF82]
 gi|226902152|gb|EEH88411.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|242375927|emb|CAQ30608.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli BL21(DE3)]
 gi|253325923|gb|ACT30525.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972114|gb|ACT37785.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|253976323|gb|ACT41993.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli BL21(DE3)]
 gi|254590628|gb|ACT69989.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|257757474|dbj|BAI28971.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257762600|dbj|BAI34095.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281177311|dbj|BAI53641.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE15]
 gi|284919871|emb|CBG32926.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli 042]
 gi|290760789|gb|ADD54750.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|291321204|gb|EFE60646.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|291430685|gb|EFF03683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|294492769|gb|ADE91525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli IHE3034]
 gi|300299669|gb|EFJ56054.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|300409030|gb|EFJ92568.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|300456555|gb|EFK20048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300460442|gb|EFK23935.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300525504|gb|EFK46573.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300531336|gb|EFK52398.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|305850973|gb|EFM51428.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|307629665|gb|ADN73969.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UM146]
 gi|312289462|gb|EFR17356.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|312944697|gb|ADR25524.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315285163|gb|EFU44608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 110-3]
 gi|315294714|gb|EFU54057.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 153-1]
 gi|315300008|gb|EFU59246.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 16-3]
 gi|320179653|gb|EFW54602.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii ATCC 9905]
 gi|320190386|gb|EFW65036.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197458|gb|EFW72072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli WV_060327]
 gi|320642130|gb|EFX11481.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. G5101]
 gi|320647493|gb|EFX16288.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. 493-89]
 gi|320652827|gb|EFX21065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. H 2687]
 gi|320658216|gb|EFX25945.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663525|gb|EFX30809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668837|gb|EFX35632.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323160111|gb|EFZ46072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E128010]
 gi|323171254|gb|EFZ56902.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli LT-68]
 gi|323176399|gb|EFZ61991.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1180]
 gi|323935143|gb|EGB31510.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1520]
 gi|323945720|gb|EGB41768.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H120]
 gi|323950913|gb|EGB46790.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H252]
 gi|323955289|gb|EGB51062.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H263]
 gi|323960037|gb|EGB55683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H489]
 gi|323964813|gb|EGB60280.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli M863]
 gi|323970763|gb|EGB66017.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TA007]
 gi|323975745|gb|EGB70841.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TW10509]
 gi|324008326|gb|EGB77545.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 57-2]
 gi|324118441|gb|EGC12335.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1167]
 gi|326345189|gb|EGD68932.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1125]
 gi|326346957|gb|EGD70691.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1044]
 gi|327255069|gb|EGE66672.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli STEC_7v]
 gi|331052179|gb|EGI24218.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331066539|gb|EGI38416.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331072128|gb|EGI43464.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332095382|gb|EGJ00405.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 5216-82]
 gi|332097809|gb|EGJ02782.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 155-74]
 gi|332103573|gb|EGJ06919.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|332341423|gb|AEE54757.1| UDP-N-acetylmuramate--alanine ligase MurC [Escherichia coli UMNK88]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|227885004|ref|ZP_04002809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|227837833|gb|EEJ48299.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|307551935|gb|ADN44710.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli ABU 83972]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDSAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|254291802|ref|ZP_04962587.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
 gi|150422314|gb|EDN14276.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
          Length = 506

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 145/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 84  ADKGATIFIGHEAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 143

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 144 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 194

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 195 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 239

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q T
Sbjct: 240 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFT 296

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + +    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 297 VVRKGKANLNITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 356

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 357 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 417 EQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 475 GDLVLTQGAGD 485


>gi|296331096|ref|ZP_06873570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674251|ref|YP_003865923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151740|gb|EFG92615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412495|gb|ADM37614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 451

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 124/361 (34%), Gaps = 42/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  L        + +TG++GK++  + + ++ +     +   G   T++S   +    
Sbjct: 105 ELAYYLTN---AKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVAS---EVAYH 158

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                ++   LS     G                     +       NL   H+DYH T+
Sbjct: 159 ADGDEWIVTELSSFQLMGTHAF-----------------RPEISLILNLFDAHLDYHHTR 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK +++      +  AI+  DD     + +          SV    +     K  
Sbjct: 202 ENYEKAKQKVYLHQAASDK-AIVNQDDETVVRLAEAGKAENIP-FSVSKTLEQGAYVKDG 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            I    +  I +E         LPG   + N L A  +    G  +  V + L     V 
Sbjct: 260 MIMFNGEAIIPLE------EVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVK 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R ++V T  +  + Y D   T+  +    K +        +++   G DR  G   +  
Sbjct: 314 HRLQYVTT-VKDRKFYNDSKATN--ILATSKALSAFDKP--VILLAGGLDRGNGFDDLKP 368

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    A +       P+ E   K+  E+  GI       N  +A+  A  + N+ DV++
Sbjct: 369 YMKHVKA-VLTFGQTAPKLE---KLGNEM--GIQHVKRVDNVEQAVSAAFALSNEGDVIL 422

Query: 464 V 464
           +
Sbjct: 423 L 423


>gi|194017884|ref|ZP_03056493.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
 gi|194010536|gb|EDW20109.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
          Length = 432

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 130/396 (32%), Gaps = 57/396 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +    +    P++      KFL  +            +A+TG  GK+S    +  + Q 
Sbjct: 75  PEIERALSEGIPVI---RYHKFLGEYMDTFTN------VAITGAHGKTSTTGLLAHVMQS 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +S+ IG  S +            S  ++ +A  Y               H L  H  
Sbjct: 126 AKPTSYLIGDGSGMG--------KENSEYFVFEACEY-------------RRHFLSYH-- 162

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMK 258
                     TN+  DH DY       F+A    F+ +  +   AII   DD +  ++  
Sbjct: 163 ----PDYAIMTNIDFDHPDYFSDIDDVFDA----FQNMALQVKKAIIACGDDEHLPKIQA 214

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNAL 316
           +       V+  G+ +      + V          + V    +D F  P  G   V N+L
Sbjct: 215 KVP-----VVYYGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAYGNHNVLNSL 269

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               LC    ID  L+   L     V  RF       +   +  DYAH    +E+ ++  
Sbjct: 270 AVIALCHYEAIDVELIKGALTTFGGVKRRFNEKVVGEQ--VLIDDYAHHPTEIEVTIEAA 327

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEII 433
           R       I+ VF         +       +L  AD   + D      E+  K+   ++ 
Sbjct: 328 RQKYPDREIVAVFQPHTFTRTQQFLSEFADSLKKADYVYLCDIFGSARENIGKLSIEDLR 387

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             IP             T++   +K  +LV  G G 
Sbjct: 388 EKIPQAQLIAEE----DTSVLKAHKDGILVFMGAGD 419


>gi|89897960|ref|YP_515070.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
 gi|89331332|dbj|BAE80925.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
          Length = 811

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 128/391 (32%), Gaps = 65/391 (16%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-----------VDNTRKFL-----S 103
           + Q +A+GA        +        +  +  I+             +  RK L     +
Sbjct: 42  VDQLVAKGAI-------FLPGHKENHVPEDCTIIYGSGISTDNVEYKEAVRKQLPMMHRA 94

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTIS--SFAQDN 160
              + L  +H   +++  G+ GK++V S +  I Q +    S+ IG  +++S   ++ ++
Sbjct: 95  ELLAFLMQEHTSILVS--GSHGKTTVTSLITAIFQTAKKDPSYAIGGLNSLSLNGYSGNS 152

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                       +L Y                                 TNL  +H+   
Sbjct: 153 EYFIAEADESDGSLKYYH-------------------------PKIAVVTNLDNEHLSNF 187

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HL 279
           +  +      +  F   +   +      D    +E+  R         S G+      ++
Sbjct: 188 EGNKEKLALTIEEFARKVDNPNLCFYNGD---CQELKGRISGK-----SYGFSQDCHLYI 239

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                   +   ++S   KD+ D    L G+  V NA VA G+ + +GID   + E L+ 
Sbjct: 240 YSHRQDGWRSVFSLSFLEKDYQDIDLNLIGKHNVANAAVAMGIALTLGIDEESIREALKN 299

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQG 397
              V  R E   T+        DYAH  + +   L  +R      R+I +          
Sbjct: 300 FPGVQRRMERKNTSET-FLFLEDYAHHPSEISCTLGGLRDAVGVRRVIAICQPHRFSRLQ 358

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
                   A   AD  I+TD     E P  +
Sbjct: 359 HCLEDFFNAFQDADEVILTDIYSAGETPLDL 389


>gi|213962172|ref|ZP_03390436.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga sputigena
           Capno]
 gi|213955178|gb|EEB66496.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga sputigena
           Capno]
          Length = 448

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 117/367 (31%), Gaps = 47/367 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V + A                 VV  + + L       +       LAV GT GK++ +
Sbjct: 75  VVYTPAVPKDHKELVFFQENGYQVVKRS-EVLGFITKNTF------CLAVAGTHGKTTTS 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I   SG         +++S+F         S          L  +G  +  VEA 
Sbjct: 128 SILAHIMVESG---------ASVSAFLGGIAENFNS---------NLVLKGSEYTVVEAD 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                  RL          T++  DH+D +  +Q           ++ P  S  +    +
Sbjct: 170 EFDRSFLRLS---PNIACITSMDADHLDIYGDEQHLIEGFHEFAGKIKPGGSLIVRNGLN 226

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              +              + G +       + +  +           G  + D  F  PG
Sbjct: 227 IAGE--------------TYGLEDNSDYSFQNIHIVDGIYHFDFKYAGGIYKDITFMKPG 272

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A  + +  GI    +L HL     V  RF ++    +      DYAH  + 
Sbjct: 273 RHNLLNALAAIAMAVKAGIAPEKLLPHLATFKGVKRRFSYI-IKEKDFVFIDDYAHHPSE 331

Query: 369 LEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-E 426
           +  + + +  +       +VF                 +L   D  I+ D  P  E P E
Sbjct: 332 INALYQAVAEMYPNTPKTIVFQPHLFTRTRDFMDDFAKSLSQFDEVILLDIYPARELPIE 391

Query: 427 KIRAEII 433
            I ++++
Sbjct: 392 GITSQVL 398


>gi|206896268|ref|YP_002247020.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738885|gb|ACI17963.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 440

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 130/403 (32%), Gaps = 44/403 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     +++N      +   + + + V+  S     G +F+A+ G+K  G  F  QA+ 
Sbjct: 1   MLASQLAKIVNG----QLVGDDFEFDHVAFSSNDCNPGTLFIALPGSKTHGAKFATQAMQ 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  ++        +           ++V +  + +      L   +   I+ V G SG
Sbjct: 57  NGASGLLTDVEPEASN----------YVLVTDAFEAVKKLGETLVRSYSGKIVVVLGASG 106

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+++    + +           G  +TI S   D      S +     +         H 
Sbjct: 107 KTTLKELARSLAPV--RVWSSYGNRNTIISLVTDLFNERESALNAPYWILEFG----IHD 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             +A         L      A  FT+LG +H+++ +         ++    +    +   
Sbjct: 161 KKDADDF------LQVFNPYAALFTSLGAEHLEFLENVDVAVRTNLK----VGMAATKRF 210

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLF 304
               D YS E            +  G               +   +  +   G++ D + 
Sbjct: 211 ALVSDEYSVE----------DAILFGSPQTSAWFDISSFTCDGCTLGKLMCHGEEKDVVL 260

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
           P  G+    +   AA   ++ G     +    E L  +        T      I+ D Y 
Sbjct: 261 PFWGKRSAQSVAGAAAFWVSEGFGLDELPW--ENLDTINIWGRQQLTRWGDLLIFFDAYN 318

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
               S++  L+ +  +  G+  +V G   +  +       K+A
Sbjct: 319 ANPESMKEFLEVVSEVPYGKKGLVIGDMLELGEYSHYWHRKLA 361


>gi|68249688|ref|YP_248800.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260581812|ref|ZP_05849608.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|81335883|sp|Q4QLF7|MURC_HAEI8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68057887|gb|AAX88140.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260095005|gb|EEW78897.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|309973394|gb|ADO96595.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2846]
          Length = 475

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 128/375 (34%), Gaps = 39/375 (10%)

Query: 59  FIPQAIA--QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA      +  A+ +   P++      +   + A  +  +H 
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRHG 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I  ++ L    +      S+          +  YL   +
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL---I 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D ++       A    F
Sbjct: 172 AEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +             Q  +                I 
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVIC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G    
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIR 335

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +   R+  DY H    +++ +K  R      RI+++F                  L L 
Sbjct: 336 PNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSLV 395

Query: 411 DIAIVTDDNPRSEDP 425
           D  I+ D     E P
Sbjct: 396 DALIMLDVYAAGEAP 410


>gi|327404202|ref|YP_004345040.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
 gi|327319710|gb|AEA44202.1| UDP-N-acetylmuramate--L-alanine ligase [Fluviicola taffensis DSM
           16823]
          Length = 459

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 128/382 (33%), Gaps = 52/382 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLA 171
                L V GT GK++ ++ +  +  +S L     +G  S  S+F  +            
Sbjct: 114 QTSKGLGVAGTHGKTTTSTMLAYVLSQSHLKCSAFLGGIS--SNFNSNV----------- 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                L      +  +EA        RL   K  A   T +  DH+D + T++       
Sbjct: 161 -----LVDASADYSVIEADEFDRSFLRL---KPYASIITAMDPDHLDIYGTEE------- 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            LF+E   + +             + K        G R +S G       +      +  
Sbjct: 206 -LFQEGFQEYA----NKHSDNQLLIYKYNLPLKQTGFRGISYGINTPSAQVNGSNLHYED 260

Query: 289 QQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +  + ++ +D         LPG     NAL  A +C  +G+    +   L+    V  R
Sbjct: 261 GKFILDIQFQDELWESVSLGLPGIHNAENALAVAMMCRELGLSEEEIRSGLKNFKGVKRR 320

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
           FE+     +   I  DYAH    +  ++ +IR      +II VF                
Sbjct: 321 FEYHLRTEKLIYI-DDYAHHPTEIAALVSSIRLLYPDKKIIGVFQPHLFSRTRDFEDGFV 379

Query: 405 IALDLADIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + L   D AI+    P  E+P       E++  I          E +   +  +++  V+
Sbjct: 380 VELSKLDQAIIMPIYPAREEPIEGVTSDELVRKIGKKASLKTPKEVLEF-MSSVDEG-VV 437

Query: 463 VVAGKGH------ETVHIVTNG 478
           +  G G       E   I+ N 
Sbjct: 438 LTIGAGDIDRIVPEVGKILENK 459


>gi|229514029|ref|ZP_04403491.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
 gi|229349210|gb|EEO14167.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
          Length = 506

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 145/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 84  ADKGATIFIGHQAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 143

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 144 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 194

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 195 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 239

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q T
Sbjct: 240 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFT 296

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 297 VVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 356

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 357 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 417 EQVDVLIMLDVYAAGERP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 475 GDLVLTQGAGD 485


>gi|42523429|ref|NP_968809.1| hypothetical protein Bd1952 [Bdellovibrio bacteriovorus HD100]
 gi|39575635|emb|CAE79802.1| mpl [Bdellovibrio bacteriovorus HD100]
          Length = 451

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 122/366 (33%), Gaps = 37/366 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK++  S +  + + +G+    +     I    ++   +  +P      +   
Sbjct: 94  VVISGTHGKTTTTSMMAWVAENAGVKPGFL-----IGGIPKNFSQSFKNPEDNYFIIEGD 148

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    V    H          +      T++  DH D ++       +  RL + L
Sbjct: 149 EYDTAFFDKVPKFIH---------YRPKHVILTSVEFDHADIYKDLDDVKKSFARLMD-L 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP+    +  A+DA   E+ K            G +  F   K +    N     +   G
Sbjct: 199 LPENGTLLACAEDANVMELRKLTKCKNSFTYGFGAEADF-RAKIMFQNANGLGFEVHHRG 257

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    +   + GE+ V NA     +   +G     +   LE    V  R E +G    G 
Sbjct: 258 EIMGPYAMQITGEYNVLNATAVVAMSKMLGFSENRIQIALESFEGVKRRQEILG-EPNGI 316

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK----IALDLADI 412
            +  D+AH   ++   +K I+    GR   VF     R    R  + +     A   +  
Sbjct: 317 LVIEDFAHHPTAVRETVKGIQKKYPGRK--VFSVFEPRSATSRRKVFQKDYVEAFKGSHE 374

Query: 413 AIVTD-------DNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            ++         D        ++  ++         F    + + A++      +K DV+
Sbjct: 375 VLLAKAFDQTKIDEENRFSTHELVDDLKKTHVTAADFDTADDIVAALK---SKAHKGDVI 431

Query: 463 VVAGKG 468
           ++   G
Sbjct: 432 LIMSNG 437


>gi|251810613|ref|ZP_04825086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805773|gb|EES58430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 454

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 127/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S          S  YL   L
Sbjct: 116 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASK---VAQEVKSDEYLITEL 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+T + Y NAK +++
Sbjct: 173 SSFQLLGIEEY-----------------KPHIAIITNIYSAHLDYHETLENYQNAKKQIY 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   +      Q      ++V  I+ K    + 
Sbjct: 216 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQ------QEVDGIYIKDGFIV- 263

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G          LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 264 FNGIRIINTKDLVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                   +  +  +     L     + S    +++ CGG     +   +     ++  +
Sbjct: 324 R------TNKYYNDSKATNTLATQFALNSFDQPIIWLCGGLDRGNEFDELIPYMENVRVM 377

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +        E  +K            I+  +  +A+    +++   DV+++
Sbjct: 378 VVF------GETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 423


>gi|241668293|ref|ZP_04755871.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876825|ref|ZP_05249535.1| glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842846|gb|EET21260.1| glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 561

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 133/374 (35%), Gaps = 29/374 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +    + VTGT+GK++       IC+ +G      G TST      D  +          
Sbjct: 170 YDIPAVIVTGTNGKTTTVRLTDYICRTAGK---LTGYTSTDWVKVNDELIDEGDYSGPTG 226

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAK 230
               L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK
Sbjct: 227 HQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAK 286

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQ 289
             +F   + K+S A+I  D+ Y K+   +   A   V           +L K       +
Sbjct: 287 AIVF-RTMGKDSHAVINLDNFYMKQQFDKLSCAKIIVTQDPDQHDMDYYLSKADYACVVE 345

Query: 290 QVTISVEGK----------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               +   K          D         +  + NA++A  L   +GID   + + L   
Sbjct: 346 NGIFTWIDKKSKKQILPVVDAPLTVKGFAKHNIENAMIAIALSFKLGIDFDYIEKALRSY 405

Query: 340 --HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396
                  R              +DYAH    +E +L  I+     G+  ++ G  GDR  
Sbjct: 406 KNDPKVNRGRANIFEFDNKVAVLDYAHNEAGMEALLNMIKAYDKGGKKYLMIGTTGDRKY 465

Query: 397 GKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEII-HGIPGFIEKGNRIEAI 449
               I   I     D  ++  T+   R     E P  IR ++   G        +  E I
Sbjct: 466 LISGINDIILEHGIDFVVIKETEKYLRGAKPLELPTLIRDDLERKGFDISKTYISHGELI 525

Query: 450 --RTAIEMLNKQDV 461
             +  ++ML   D+
Sbjct: 526 GVKYILDMLEDNDI 539


>gi|117622377|ref|YP_851290.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
 gi|166224687|sp|A1A7D6|MURC_ECOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115511501|gb|ABI99575.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 147/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R      +++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKKLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|157693382|ref|YP_001487844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
 gi|167017279|sp|A8FGB7|MURC_BACP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157682140|gb|ABV63284.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
          Length = 432

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 131/396 (33%), Gaps = 57/396 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +    +    P++      KFL  +            +A+TG  GK+S    +  + Q 
Sbjct: 75  PEIERALSEGIPVI---RYHKFLGEYMDSFTN------VAITGAHGKTSTTGLLAHVMQS 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +S+ IG  S +            S  ++ +A  Y               H L  H  
Sbjct: 126 AKPTSYLIGDGSGMG--------KENSEYFVFEACEY-------------RRHFLSYH-- 162

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMK 258
                     TN+  DH DY       F+A    F+ +  +   AII   DD +  ++  
Sbjct: 163 ----PDYAIMTNIDFDHPDYFSDIDDVFDA----FQNMALQVKKAIIACGDDEHLPKIQA 214

Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNAL 316
           +       V+  G+ +      + V          + V    +D F  P  G   V N+L
Sbjct: 215 KVP-----VVYYGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAYGNHNVLNSL 269

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               LC    ID  L+   L     V  RF      ++   +  DYAH    +E+ ++  
Sbjct: 270 AVIALCHYESIDVELIKGALTTFGGVKRRFNEKVVGAQ--VLIDDYAHHPTEIEVTIEAA 327

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEII 433
           R       I+ VF         +       +L  AD   + D      E+  K+   ++ 
Sbjct: 328 RQKYPDREIVAVFQPHTFTRTQQFLSEFADSLKKADYVYLCDIFGSARENIGKLSIEDLR 387

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             IP             T++   +K  +L+  G G 
Sbjct: 388 EKIPQAQLIAEE----DTSVLKAHKDGILIFMGAGD 419


>gi|21220566|ref|NP_626345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           coelicolor A3(2)]
 gi|289772189|ref|ZP_06531567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
 gi|30316144|sp|Q9S2W9|MURD_STRCO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|5689958|emb|CAB51995.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptomyces coelicolor A3(2)]
 gi|289702388|gb|EFD69817.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
          Length = 471

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 144/413 (34%), Gaps = 52/413 (12%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G E IV +  +      F+A  ++  P+    +      L    L G+ P   LAVTGT+
Sbjct: 69  GTELIVTAPGWKPTKPLFTAAGQAGVPVW--GDVELAWRL--RGLNGRKPAPWLAVTGTN 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +GL +  +G                     ++   +    Q    
Sbjct: 125 GKTTTVQMLASILKAAGLRTAAVGNIG------------------VSLLDAVTGEQEYDV 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E      +  
Sbjct: 167 LAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYEG--NHVACV 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
              AD A    V       GCR +             V       +  +    K+   L 
Sbjct: 223 YNVADKATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVEGLLVDRAFVEDRQKNAQELA 282

Query: 304 ----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                  P    + NAL AAGL  A G+ +A V + L        R   V        + 
Sbjct: 283 EVSDVNPPAPHNIANALAAAGLARAFGVSAAAVRDGLRAFTPDAHRIAHVADVDGVAYVD 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A  +++ E  L    +      IV    G  +      ++   A  L    ++  D 
Sbjct: 343 DSKATNTHATEASLAAYES------IVWIAGGLAKGATFDELVAGAAKRLRGAVLIGADR 396

Query: 420 PRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVA 465
                   IR  +    P   +   +R       +A++ A  +    D +++A
Sbjct: 397 ------ALIREALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLA 443


>gi|229521231|ref|ZP_04410651.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
 gi|229341763|gb|EEO06765.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
          Length = 506

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 143/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A ++   S       I    P +     ++        + A  +  +H
Sbjct: 84  ADKGATIFIGHEAQNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 143

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 144 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 194

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 195 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 239

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+     + ++       + Q T
Sbjct: 240 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSDDADVRIENYRQNGQQGQFT 296

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 297 VVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 356

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 357 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 417 EQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 475 GDLVLTQGAGD 485


>gi|191167770|ref|ZP_03029577.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209917284|ref|YP_002291368.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SE11]
 gi|307311458|ref|ZP_07591100.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|309796081|ref|ZP_07690493.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|226706322|sp|B6HZ68|MURC_ECOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190902196|gb|EDV61938.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209910543|dbj|BAG75617.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE11]
 gi|306908437|gb|EFN38935.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|308120323|gb|EFO57585.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|315059314|gb|ADT73641.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli W]
 gi|320200390|gb|EFW74976.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EC4100B]
 gi|323181788|gb|EFZ67201.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1357]
 gi|323380128|gb|ADX52396.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli KO11]
 gi|324017748|gb|EGB86967.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 117-3]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFNEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|242242465|ref|ZP_04796910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
 gi|242234039|gb|EES36351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
          Length = 454

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S   +      S  YL   L
Sbjct: 116 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVAS---NVAQEVKSDEYLITEL 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+T + Y NAK +++
Sbjct: 173 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHETLENYQNAKKQIY 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   +      Q      ++V  I+ K    + 
Sbjct: 216 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQ------QEVDGIYIKDGFIV- 263

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G          LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 264 FNGIRIINTKDLVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                   +  +  +     L     + S    +++ CGG     +   +     ++  +
Sbjct: 324 R------TNKYYNDSKATNTLATQFALNSFDQPIIWLCGGLDRGNEFDELIPYMENVRVM 377

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +        E  +K            I+  +  +A+    +++   DV+++
Sbjct: 378 VVF------GETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 423


>gi|218698514|ref|YP_002406143.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI39]
 gi|218703351|ref|YP_002410870.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UMN026]
 gi|293403163|ref|ZP_06647260.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|293408182|ref|ZP_06652022.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298378693|ref|ZP_06988577.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300900878|ref|ZP_07119015.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|301026101|ref|ZP_07189576.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331661465|ref|ZP_08362389.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331671610|ref|ZP_08372408.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
 gi|226711865|sp|B7NHJ7|MURC_ECO7I RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711867|sp|B7N7W4|MURC_ECOLU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218368500|emb|CAR16235.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI39]
 gi|218430448|emb|CAR11314.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli UMN026]
 gi|291430078|gb|EFF03092.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|291472433|gb|EFF14915.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298281027|gb|EFI22528.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300355642|gb|EFJ71512.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|300395672|gb|EFJ79210.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331061380|gb|EGI33343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331071455|gb|EGI42812.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|2177094|gb|AAB60787.1| UDP-MurNAc:L-alanine ligase [Escherichia coli]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 144/439 (32%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VGT--------NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G          S    +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSDTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPARVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|303327350|ref|ZP_07357791.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862290|gb|EFL85223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
           sp. 3_1_syn3]
          Length = 434

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 120/398 (30%), Gaps = 67/398 (16%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A VV S             +            + L    L  +    +LAVTGTSGK++
Sbjct: 76  AAFVVPSPGMPVAKLVRYLGDVTRPGAPEVLAEMELAWRYLDDEP---VLAVTGTSGKTT 132

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            AS    + Q  G + F  G   T  S                     LS +    + +E
Sbjct: 133 TASLAAAMLQAQGYTVFLGGNIGTPLSEYV------------------LSGRKADVLVLE 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L           AG   N+  +H+DYH+    Y  AK RLF              
Sbjct: 175 ISSFQLQA--CSTFCPRAGVLLNITPNHLDYHKDMAEYTEAKFRLFR-----------CQ 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D+     +    H+          + +                 + V   +      LPG
Sbjct: 222 DEGDLAVLGADLHDPAQ---GFNLRAR----------------RVWVRASERFPQSGLPG 262

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
               +N   A   C   G+  A     + +   +P R E V        +      T +S
Sbjct: 263 AHNKFNEEAAWQACRFFGVSEANAARAVARFKPLPHRLELVRERCGVLYVNDSKCTTVSS 322

Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           L++ L+   R +       +   G  +      + G I   + ++A+        E    
Sbjct: 323 LKVALQAFDRPLR------LLCGGKFKGGDLAALGGLIRERVREVALFGASREHFETA-- 374

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                  G+          EA+R       + DV+++A
Sbjct: 375 -----WQGLAPISWHPVLEEAVRALSASAQEGDVVLLA 407


>gi|21672877|ref|NP_660942.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium tepidum
           TLS]
 gi|30316059|sp|Q8KGD2|MURD_CHLTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21645929|gb|AAM71284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium tepidum
           TLS]
          Length = 465

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 136/401 (33%), Gaps = 46/401 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A   +VS                 I VV          AS      P  I+ +TGT GK+
Sbjct: 69  AALCIVSPGIPQTVPVIREMHARGIPVVSEI-----ELASWFC---PARIIGITGTDGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + A+ + +IC   G          ++ +         P                     +
Sbjct: 121 TTATLLHRICAAEGERKGF--RAFSVGNIGIPFSSEVPGMT------------AADIAVL 166

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAII 246
           E SS+ L+       +      TN+  DH+D +  + +AY  AK R+       ++    
Sbjct: 167 ELSSYQLEA--CFDFRPNIAVLTNVTPDHMDRYGGSIEAYATAKYRIHARQGAGDTLIY- 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEGK 298
             DD   +    R+     R++ +G +        G F+ ++    +      T  +   
Sbjct: 224 NHDDPILRAHFDRSEPWPFRLVRLGLRAETLDVAPGDFVSVEDGEIVVRASGSTERLMRV 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D        GE  +YNAL +    +A G+    +   L     V  R E  G N+ G   
Sbjct: 284 DEIMKPGFRGEHNLYNALSSVAAALAAGVAPETMRGVLAGFGGVEHRQELAG-NACGLNW 342

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             D   T  S+  + + ++++ +G   V+   G D+      I   +   +A I  +   
Sbjct: 343 INDSKAT--SVNALRQALQSVPAGM--VLIAGGRDKGNDYSAIADLVREKVACIVAI--- 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
               E   KI A+   G+   +E  +  EA+  A +     
Sbjct: 396 ---GESRRKI-ADAFRGVTPVVEAASLAEAVELARQNARPG 432


>gi|295086276|emb|CBK67799.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides xylanisolvens
           XB1A]
          Length = 466

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 123/370 (33%), Gaps = 49/370 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T+   DH+D + T+QAY  +   
Sbjct: 155 --NLLLSQTSPYTVIEADEFDRSFHWLS---PYMTVITSTDPDHLDIYGTEQAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--------- 461
           D  I+ D  P  E P       I G+   +   N    I     M  K+D+         
Sbjct: 383 DEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEDILNILKDKNI 433

Query: 462 -LVV-AGKGH 469
            +++  G G 
Sbjct: 434 EVLITLGAGD 443


>gi|294791077|ref|ZP_06756235.1| UDP-N-acetylmuramate--alanine ligase [Scardovia inopinata F0304]
 gi|294458974|gb|EFG27327.1| UDP-N-acetylmuramate--alanine ligase [Scardovia inopinata F0304]
          Length = 533

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 129/452 (28%), Gaps = 76/452 (16%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGA+ +V SSA      +     R    IL   +    L               + V G 
Sbjct: 91  QGAQTVVWSSAIKSDNPEIQEASRRGLRILHRSDILALLMAH---------SRSVTVAGA 141

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++ ++ + QI Q +  S       +   S   D                     G T
Sbjct: 142 HGKTTTSAMIAQILQSASSSDLHDPSFAIGGSIRTDQGTVDGGHAG-----------GGT 190

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               EA          +         TN+  DH+D++ +  A+  A     +        
Sbjct: 191 VFVAEADESDGS---FEKYHPSIAVITNVEPDHLDHYGSAAAFQQA---FVDHAHHALDH 244

Query: 244 AIIYADDAYSKEVMKRAHN---AGCRVLSVGYQ-------------------------GK 275
            I+  DD  +  V+K  +        V +                             G+
Sbjct: 245 VILCGDDPGALAVLKSLNQEALHHAVVYTTQEDFSLAGLPATLVRIEQEETAEAQVESGQ 304

Query: 276 FIHLKKVCAIHNKQQVTISVEGK--------DFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +  ++     +    EG          +     +PG     NA  A    I +G+
Sbjct: 305 QDQAAESFSLLLPASLLAQSEGGPSQDVLPGRYPVKLRVPGLHNARNAAAAIICSILLGM 364

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-V 386
           +     +     +    RFE  G   R   +  DYAH    +  +LK  R       I V
Sbjct: 365 NPHQACQAAYTFYGAKRRFEIRGVE-RAVTVVDDYAHHPTEIVALLKAARRRFPQSKIRV 423

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--------IRAEIIH--GI 436
           +F                 AL LAD  +VT   P  E  E         I + +    G 
Sbjct: 424 IFQPHLYSRTFYFAQQFADALSLADDVMVTGIFPAREKQEDWPQVSADTIVSLMKKENGP 483

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +  +A R         DV++  G G
Sbjct: 484 EFSASIDDMNQAGRLMASHCGPGDVVITVGAG 515


>gi|237716649|ref|ZP_04547130.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D1]
 gi|262405424|ref|ZP_06081974.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_22]
 gi|294646205|ref|ZP_06723859.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CC
           2a]
 gi|294809128|ref|ZP_06767846.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229442632|gb|EEO48423.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D1]
 gi|262356299|gb|EEZ05389.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_22]
 gi|292638423|gb|EFF56787.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CC
           2a]
 gi|294443682|gb|EFG12431.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 466

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 123/370 (33%), Gaps = 49/370 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T+   DH+D + T+QAY  +   
Sbjct: 155 --NLLLSQTSPYTVIEADEFDRSFHWLS---PYMTVITSTDPDHLDIYGTEQAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--------- 461
           D  I+ D  P  E P       I G+   +   N    I     M  K+D+         
Sbjct: 383 DEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEDILNILKDKNI 433

Query: 462 -LVV-AGKGH 469
            +++  G G 
Sbjct: 434 EVLITLGAGD 443


>gi|57866690|ref|YP_188331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis RP62A]
 gi|62900660|sp|Q5HQ09|MURD_STAEQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|57637348|gb|AAW54136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis RP62A]
          Length = 449

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S   +      S  YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVAS---NVAQEVKSDEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+T + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   +      Q      ++V  I+ K    + 
Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G          LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 259 FNGIRIINTKDLVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                   +  +  +     L     + S    +++ CGG     +   +     ++  +
Sbjct: 319 R------TNKYYNDSKATNTLATQFALNSFDQPIIWLCGGLDRGNEFDELIPYMENVRVM 372

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +        E  +K            I+  +  +A+    +++   DV+++
Sbjct: 373 VVF------GETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|296110605|ref|YP_003620986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
 gi|295832136|gb|ADG40017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
          Length = 448

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 119/349 (34%), Gaps = 41/349 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++  S ++ + +  G      G   T  S   +N         L   LS
Sbjct: 111 RLIAVTGSNGKTTTTSLIRDMLESDGQQVTTAGNIGTPVSEVVENLT---DEETLLLELS 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G                    I+      TN+  +H+DYH ++  Y  AK ++ +
Sbjct: 168 SFQLLG-----------------TPDIRPDIALITNIFANHLDYHGSRDNYVEAKFQITK 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                ++  +    +A  K+          +V+    +       +     N   + I+ 
Sbjct: 211 NQTVDQTLVL----NAEGKDTQNFITRTNAKVVEFSRKS-----SEFMVTVNADSLMIAN 261

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     L G   + N + A  +    G+  + + + LE    V  R +FV + ++ 
Sbjct: 262 HPVMPLTAIKLVGPHNLENIVAATTVAKLAGVHDSAIRQVLETFGGVAHRLQFVLSANQ- 320

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            + Y D   T   +E     + +     I      G DR      ++  +        ++
Sbjct: 321 IKFYNDSKAT--DIEATQTALNSFDQPTIW--LAGGLDRGDDLTRLVPNL---THVKVVI 373

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E  +KI           I   +  +A+  A+++    D++++
Sbjct: 374 ----AFGETQQKIVEVARAANKPVITVTDVTQAVPVAVKLAEAGDIVLL 418


>gi|27467776|ref|NP_764413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis ATCC 12228]
 gi|282876386|ref|ZP_06285253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|30316001|sp|Q8CSX6|MURD_STAES RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27315320|gb|AAO04455.1|AE016746_245 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis ATCC 12228]
 gi|281295411|gb|EFA87938.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|329736177|gb|EGG72449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU028]
          Length = 449

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 127/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S          S  YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASK---VAQEVKSDEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+T + Y NAK +++
Sbjct: 168 SSFQLLGIEEY-----------------KPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   +      Q      ++V  I+ K    + 
Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G          LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 259 FNGIRIINTKDLVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                   +  +  +     L     + S    +++ CGG     +   +     ++  +
Sbjct: 319 R------TNKYYNDSKATNTLATQFALNSFDQPIIWLCGGLDRGNEFDELIPYMENVRVM 372

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +        E  +K            I+  +  +A+    +++   DV+++
Sbjct: 373 VVF------GETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|293366852|ref|ZP_06613528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319153|gb|EFE59523.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 454

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 127/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S          S  YL   L
Sbjct: 116 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASK---VAQEVKSDEYLITEL 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+T + Y NAK +++
Sbjct: 173 SSFQLLGIEEY-----------------KPHIAIITNIYSAHLDYHETLENYQNAKKQIY 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   +      Q      ++V  I+ K    + 
Sbjct: 216 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQ------QEVDGIYIKDGFIV- 263

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G          LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 264 FNGIRIINTKDLVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                   +  +  +     L     + S    +++ CGG     +   +     ++  +
Sbjct: 324 R------TNKYYNDSKATNTLATQFALNSFDQPIIWLCGGLDRGNEFDELIPYMENVRVM 377

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +        E  +K            I+  +  +A+    +++   DV+++
Sbjct: 378 VVF------GETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 423


>gi|74310710|ref|YP_309129.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sonnei Ss046]
 gi|109892739|sp|Q3Z5R8|MURC_SHISS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|73854187|gb|AAZ86894.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella sonnei Ss046]
 gi|323165974|gb|EFZ51754.1| UDP-N-acetylmuramate--alanine ligase [Shigella sonnei 53G]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLIGNDLILVQGAGN 467


>gi|56964122|ref|YP_175853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           clausii KSM-K16]
 gi|60390298|sp|Q5WFG8|MURD_BACSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56910365|dbj|BAD64892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus clausii
           KSM-K16]
          Length = 451

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 121/351 (34%), Gaps = 42/351 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++GK++  + V+++ + SG      G   T++S                   
Sbjct: 111 AEMVAITGSNGKTTTTTLVKEMLEHSGRKPLIAGNIGTVASEVAQK-------------- 156

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               ++    + +E SS  L     +  +     + N+   H+DYH T++ Y  AK R+ 
Sbjct: 157 ----AKAEHVIVLEVSSFQLM--GTNAFQPKVAVWLNIFDAHLDYHGTREDYIAAKARIA 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             + P +      ADD    + + R          +       ++K        + +   
Sbjct: 211 ANMGPADYLVY-NADDPTVVQAIARIGATLVPFSRINVVEDGAYVKDGTIFFKDEPILAL 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         LPG   V N L A       G     +   L     V  R ++VG+   
Sbjct: 270 AD-------AVLPGAHNVENMLAATAAARLAGATVEQIRHVLSHFPGVKHRLQYVGSWE- 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIA 413
           G + Y D   T+     IL     ++     VV   GG DR      ++  +    A +A
Sbjct: 322 GRQFYNDSKATN-----ILATKAALSGFAKPVVLIAGGLDRGNDFDELLASLKYVKAVVA 376

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    E   K+ A         +      +A   A+ +    DV+++
Sbjct: 377 Y-------GETKSKLLALAAKANVQAVTAERVQDATEKAVALSQPGDVVLL 420


>gi|306830842|ref|ZP_07464004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426865|gb|EFM29975.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 452

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 140/429 (32%), Gaps = 62/429 (14%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G   D +      + +G + I  S    L D +  +    P +  DN      + A  + 
Sbjct: 41  GKPFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNP-----MVARAIE 95

Query: 111 GKHP-------------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
              P               I+ +TG++GK++  + + +     G S    G    I   A
Sbjct: 96  KNIPVITEVELAYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKSGLLSG---NIGFPA 152

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +   T      L   LS     G                  D         TNL   HI
Sbjct: 153 SEVAQTATDKDILVMELSSFQLMG-----------------TDTFHPHIAVITNLMPTHI 195

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  + + +   +   + +  D   +   K          +    G ++
Sbjct: 196 DYHGTFEEYVAAKWNIQKNMTADDFVVLNFNQDLAKELAQKTVAKVVPFSTTEKVDGAYL 255

Query: 278 HLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                         T+  +G+         +PG   V NAL    +    GI +  + E 
Sbjct: 256 DGD-----------TLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIANDAIKET 304

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     V  R + +G    G + Y D   T+  +    K +        +++   G DR 
Sbjct: 305 LTHFGGVKHRLQALG-EINGVKFYNDSKSTN--ILATQKALSGF-ENSKVILIAGGLDRG 360

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                ++  I      + I+ +  PR +     RA     +P +++  +  +A R A + 
Sbjct: 361 NEFDELVPDITGVKL-MVILGESAPRVK-----RAADKANVP-YVDAKDVADAARIAYDK 413

Query: 456 LNKQDVLVV 464
               DV+++
Sbjct: 414 AEAGDVVLL 422


>gi|242309201|ref|ZP_04808356.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
 gi|239524242|gb|EEQ64108.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
          Length = 489

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 137/361 (37%), Gaps = 46/361 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+AVTG+ GK+S+ +F+ Q+ Q            +T++    D          +  
Sbjct: 160 PNLTIIAVTGSYGKTSLKNFLIQVLQDDFKVYATPRSINTLTGIIADINQNLSPLTDI-- 217

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              Y+   G       A   G  +  ++ IK        +G  HI+Y +T +  +  K  
Sbjct: 218 ---YIVEAG-------ARGVGDIKEIVELIKPQIAVVGKIGPAHIEYFKTMENIYQVKYE 267

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNK 288
           + +                  +       N      ++ +QGK      ++ ++ A    
Sbjct: 268 ILQS--------------DRLERAYIYKENTKPEAFNIEFQGKVICFPQNISEINADLEG 313

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               ++  G+       + G F V N   A  +   +G+    +++ ++KL  V  R   
Sbjct: 314 TSFVLTENGEKIQLETKVLGAFNVINISAAIAVAKDLGVSKNQIIKQVQKLERVNHRLSK 373

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  N +   I +D ++  N LE +L+ IR  ++ +GR ++V     +  +     + +  
Sbjct: 374 IVVNDK---IILDDSYNGN-LEGMLEAIRLASLHTGRKVIVTPGLVESSKEANVDLARAI 429

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVV 464
             + DIAI+T      E   KI  E I+     I  +K N    +++A       D+++ 
Sbjct: 430 DKVFDIAIIT-----GELNSKILKEFIYRPQKIILKDKANMESVLKSA---TQAGDLILF 481

Query: 465 A 465
           A
Sbjct: 482 A 482


>gi|323341728|ref|ZP_08081961.1| UDP-N-acetylmuramate--L-alanine ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464153|gb|EFY09346.1| UDP-N-acetylmuramate--L-alanine ligase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 441

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 129/382 (33%), Gaps = 55/382 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +++ +A+             P +      ++L               +AV+G+ GK++ 
Sbjct: 67  VVIIGNAFLDDHEEVQAAKANPTVETYRYHEYLGKMMDSY------RTIAVSGSHGKTTT 120

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + ++ +   S  + + IG                     L +   Y + +         
Sbjct: 121 TTLLRDMLSYSKETGYLIG----------------DGRGDLQRDDEYFAVEACEFR---- 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 +H L   K      TN   DH+DY ++ + Y +A     + +   ES  +++ D
Sbjct: 161 ------RHFLAY-KPKIAIMTNFEIDHVDYFKSVEDYLSAFKEFAKNV---ESLIVVWGD 210

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLP 307
           D + +++     +      S G+ +G  I   ++          + V+GK    F  P+ 
Sbjct: 211 DPHYQDL-----SFDVETWSYGFGEGNKIRATELEKTTTHSIFDVEVDGKRIHRFNLPIV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + +AL    + +  GI+   +   L+       R  FV    +      DYAH   
Sbjct: 266 GDHMILDALAVIAVGLYEGIEPNDIEAGLQTFTGAKRR--FVIETGKDNVYIDDYAHHPT 323

Query: 368 SLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + + L+  RT    R IV +F                 AL LAD   +         P 
Sbjct: 324 EVRVTLEAARTRYPDRKIVGIFKPHRVGRVYYFADEFADALSLADEVCLC--------PF 375

Query: 427 KIRAEIIHGIP-GFIEKGNRIE 447
               +   GI        +RIE
Sbjct: 376 TSIDDAEEGIDIDITYLQDRIE 397


>gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 134

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 10/140 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL+  L    +   +     VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 3   FSELVVPLDARLVGG-DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVG 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSV 129
            +V              +  P LVV +TRK L+   +          + AVTG+SGK++V
Sbjct: 62  ALVEREVQ--------GAALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTV 113

Query: 130 ASFVQQICQRSGLSSFQIGP 149
              +  I +  G      G 
Sbjct: 114 KEMLASILRTRGPVLATRGH 133


>gi|149371575|ref|ZP_01890991.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
 gi|149355202|gb|EDM43762.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
          Length = 444

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 137/365 (37%), Gaps = 46/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS         ++ +TG++GK++ A+   ++ +        +     I          
Sbjct: 95  EFASAFTD---ATVVGITGSNGKTTTATLTFELLKE----ELNVALGGNIG--------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        +S +   +  +E SS  LD   +          TNL  DH+D ++  
Sbjct: 139 -------KSFAEQVSEEKYNNFVLELSSFQLD--GIKDFAPHIAVLTNLSPDHLDRYEYD 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y  +K R+      +E   I  ADD    + M   H    + L    + KF      
Sbjct: 190 YDKYIASKFRI-TMNQTEEDYFIYDADDEEITKWMS-VHEIKAKKLPFSLKQKF----DE 243

Query: 283 CAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A     Q+ I++    F        L G+  V NA+ A  +   + I  A + E LE  
Sbjct: 244 GAYIKDNQIVITINNTHFTMSIAALGLKGQHNVKNAMAATTVATLLKIRKATIRESLENF 303

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V     G  +YV+ +  +N +      + ++TS  + +V   G D+     
Sbjct: 304 QGVEHRLEKVV--KIGNVLYVNDSKATN-VNATYYALDSMTSPTVWIV--GGVDKGNNYE 358

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  +   +  I  +  DN      +KI ++  + +   +E  +  EA++ A ++  + 
Sbjct: 359 DLLPLVNEKVKAIICLGVDN------QKIISQFGNVVDMMVEASSMAEAVKVAYKLSERN 412

Query: 460 DVLVV 464
           D +++
Sbjct: 413 DTVLL 417


>gi|114763027|ref|ZP_01442457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544351|gb|EAU47359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           HTCC2601]
          Length = 467

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 140/411 (34%), Gaps = 50/411 (12%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAV 120
           G   +VVS      Y   +          + V ++   F   F   +      P  ++AV
Sbjct: 66  GVARLVVSPGIPHLYPAPNPVIAAAWEAGVPVDNDIGLFFRSFGSGAWEMFDQPPKVVAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  I Q +G  S   G                         L     +
Sbjct: 126 TGSNGKSTTSALIHHILQSAGRGSQLAGNIG-------------------RGVLDIEPPE 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 167 EGGVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC--RVLSVG----YQGKFIHLKKVCAIHNKQQVTIS 294
                +  D+A  + +  +        R++ V       G    +        + +    
Sbjct: 225 RCVIGV--DEAEGRYLANQLAEGAVDDRLIRVSAARKLSGPGWDVFARKGFLTEWRKGRQ 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V   D   +  LPG     NA  A     A+G+   ++         +P R + V     
Sbjct: 283 VASIDLRQVRGLPGAHNHQNACAAYAAARALGVAPRVIEAAFHSFEGLPHRSQIVA--DA 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GG +YV+ +  +N ++  LK ++     R I     G  ++ G   +      D    A 
Sbjct: 341 GGVVYVNDSKATN-VDAALKALQAFPRIRWIC---GGLMKEGGLEAL--APGFDHVAKAY 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           V              A  + G+   +   +   A+  A+      + +++A
Sbjct: 395 VIGREAAG------FALGLAGVEAEVC-TDMDTAVARAMADAEPGETVLLA 438


>gi|37521885|ref|NP_925262.1| UDP-N-acetylmuramate--L-alanine ligase [Gloeobacter violaceus PCC
           7421]
 gi|44888167|sp|Q7NI67|MURC_GLOVI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|35212884|dbj|BAC90257.1| UDP-N-acetylmuramate-alanine ligase [Gloeobacter violaceus PCC
           7421]
          Length = 460

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 122/403 (30%), Gaps = 52/403 (12%)

Query: 82  FSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P L+         R    + A    G     ++ V+GT GK++ +S +  +
Sbjct: 76  YSSAIQPDNPELLAARRGGVAVRHRAQVLAQLAEGY---RMIGVSGTHGKTTTSSLIAVM 132

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               GL      PT  +     +               + L S       V+ S   L  
Sbjct: 133 LYHCGLD-----PTVVVGGEVDELGGN-----------ARLGSGPHLVAEVDESDGSLVL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN+  DH+D++   +    A    F++   +    +   D       
Sbjct: 177 -----FSPEVAVVTNIEGDHLDHYANLEQIVEA----FQQYANQARVVVGCLDC------ 221

Query: 257 MKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQV 312
            +   +     +S    G         +V          +   G+   +    L G   +
Sbjct: 222 -QAVRDRMPLTVSYSLDGHPQADYTADRVSFTAQGTTARVLERGEVLGELSLKLLGRHNL 280

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  +   +G+    +   L +      RFE +G          DYAH  + +   
Sbjct: 281 ANALAAVAVGRYLGLSFEQIAAGLREFRGAHRRFERIG-ERDDIVFVDDYAHHPSEVRAT 339

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------E 426
           L   R +   R++ VF                 A   AD  +VT+     E        E
Sbjct: 340 LAAAR-LQGRRVVAVFQPHRYSRSQLLLDEFGTAFGDADAVVVTEIYAAGEANTLGVSGE 398

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +   I    P    +       R     L   D+ +  G G+
Sbjct: 399 LVARRIAAHHPDVHFEATSDSLKRHLEAHLRPGDLALFLGAGN 441


>gi|88801288|ref|ZP_01116816.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
 gi|88781946|gb|EAR13123.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
          Length = 460

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 130/365 (35%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA++        I+ +TG++GK++    V +I + +GL+    G               
Sbjct: 110 EFAAKYT---SATIVGITGSNGKTTTTMLVHRILKDAGLNVGLAGNIGV----------- 155

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        ++     +  VE SS  LD   ++         TN+  DH+D ++  
Sbjct: 156 --------SFAQQVAEVSHENYVVELSSFQLD--GIEKFSSHIAILTNITPDHLDRYEYD 205

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---L 279
            + Y  +K R+  +   +    I  ADD      +K+ H    +++    + +  +   L
Sbjct: 206 FEKYVASKFRI-TQNQKESDYLIYDADDIAINTWLKQ-HKIKAKLVPFSLKKELAYGAFL 263

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K    I N  + TI +            G+  V N + A      + I    + E L   
Sbjct: 264 KGNNIIININKETIKMPISTITVK----GKHNVKNTMAATMAAQLLQIRKEAIKESLANF 319

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V    +G     D   T+  +      +  +    + +V   G D+     
Sbjct: 320 EGVEHRLENV-AKVKGVEYINDSKATN--VNATFYALECMDRQTVWIV--GGVDKGNDYN 374

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  +   +  I  +  DN      +KI+    + +   +E     EA++ A ++    
Sbjct: 375 DLLPLVREKVKAIVCLGVDN------QKIKDMFGNVVDIVVETAGAEEAVKVAHKLAEDG 428

Query: 460 DVLVV 464
           D +++
Sbjct: 429 DAVLL 433


>gi|305664533|ref|YP_003860820.1| UDP-N-acetylmuramate--L-alanine ligase [Maribacter sp. HTCC2170]
 gi|88708550|gb|EAR00786.1| UDP-N-acetylmuramate--L-alanine ligase [Maribacter sp. HTCC2170]
          Length = 450

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 109/361 (30%), Gaps = 50/361 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV GT GK++ +S +  +   +G        T+ +   ++D               S  
Sbjct: 115 FAVAGTHGKTTTSSILAHLLNETGTPF-----TAFLGGISEDFN-------------SNF 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  +  VEA        RL          T++  DH+D +   +    +      ++
Sbjct: 157 LFRGSDYSVVEADEFDRSFLRLY---PDVACITSMDADHLDIYGNSEELTKSFNDFVGKI 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
            P     +                      ++ G +      ++ +   H      +   
Sbjct: 214 NPDGKLFVRNG--------------LPLDGITYGIEDDSDYCIRNLKIEHGAYIFDLKTP 259

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                   F  PG+  + N LVA  + I  G     + E L     V  RF +       
Sbjct: 260 KTTLSGVKFNKPGKHNLLNGLVAFAMAIEAGSPPYRLAEALGTFKGVQRRFSY-KIKEDD 318

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH    +  +   I        ++ VF                 +L   D  +
Sbjct: 319 FVFIDDYAHHPTEINAVYDAIAEMHPDKNVLAVFQPHLFSRTRDFGDDFAESLSKFDSIL 378

Query: 415 VTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + +  P  E P +      +  +I +     I K N I+ I+         DVLV  G G
Sbjct: 379 LLEIYPAREQPIEGITSKWLMKKIDNDNKKLIGKSNLIQEIK-----AQSPDVLVTMGAG 433

Query: 469 H 469
            
Sbjct: 434 D 434


>gi|288929764|ref|ZP_06423607.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328865|gb|EFC67453.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 460

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 80/419 (19%), Positives = 137/419 (32%), Gaps = 47/419 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IPQA  +    +VV +     D    +        +    + L      L G      L 
Sbjct: 63  IPQACKKAQSCLVVYTPAIPDDHKELVYFRQNGFEIQKRAQVLGTLTRTLKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
             GT GK++ +     I  +S            +   +++               +Y+ S
Sbjct: 117 FAGTHGKTTTSCMCAHIMHQSHPDCNAF-----LGGISKNYGT------------NYILS 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               +V +EA       H L   +      T+   DH+D + T+ AY  +  R +  L+ 
Sbjct: 160 PKSEYVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKAAYMES-FRHYTTLIR 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    II        +V       G +V          H + V   +           ++
Sbjct: 216 EGGVLIIKKGVELKPDV-----KPGVKVYEYALDAGDFHAENVKIDNGNITFDFVSPVEN 270

Query: 300 F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +     P    + NA+ A  +    G ++  +   ++  H V  RF+F          
Sbjct: 271 VKNVTLGHPIPINIENAVAAMAMAQLNGCNAEELRYGIKTYHGVDRRFDFKIKTPH-LVF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DYAH  N +    +++R +   R I  VF                 AL L D  I+ D
Sbjct: 330 LSDYAHHPNEILQSAQSLRQLYKDRKITAVFQPHLYTRTRDFYKEFAKALSLLDEVILCD 389

Query: 418 DNPRSEDPEK------IRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E+P +      I   +  G+    I K + +E ++         DVLV  G G 
Sbjct: 390 IYPAREEPIEGVSSKLIYDNLDAGVEKSMIAKDDVLELVQQ-----RNFDVLVFLGAGD 443


>gi|240950384|ref|ZP_04754647.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
 gi|240295098|gb|EER45930.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
          Length = 475

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 147/429 (34%), Gaps = 50/429 (11%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
              GA+  +   A +++  S       I  + P +      +        + A  +  +H
Sbjct: 60  AKAGAKVFIGHQAENIEGASVVVASSAIDESNPEVAAAKEARIPVIQRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  + +  I   +GL    +      S+          +  YL   
Sbjct: 120 G---IAIAGTHGKTTTTAMISMIYTEAGLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVR 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    A++ ADD     VM+ A   G +V+S G+ +     ++       +   T
Sbjct: 216 FLRNLPFYGLAVMCADDET---VMEIAPKVGRQVISYGFSEKADYRIEDYQQTGFQGHYT 272

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +    G+  + L  +PG     NA  A  +    GI +  +L  L        RF+ +G+
Sbjct: 273 VVCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGS 332

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +    +  DY H    +++ +K  R    + R+++VF                  L
Sbjct: 333 FIRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTRDLFDDFVQVL 392

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  I+ +     E P      + +   I + G    I   +  +      +++   D
Sbjct: 393 SQVDALIMLNVYAAGEAPIVGAESKDLCRSIRNLGKVDPILVSDTSQLGEVLDQIIQDGD 452

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 453 LILAQGAGN 461


>gi|70732386|ref|YP_262142.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf-5]
 gi|81174950|sp|Q4K6J1|MURD_PSEF5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68346685|gb|AAY94291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf-5]
          Length = 448

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 133/380 (35%), Gaps = 43/380 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A++G++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLGAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     +    DA ++ ++           + G          +     ++ +   
Sbjct: 207 RG----ARQVVFNRQDALTRPLIGEGLPCW----TFGLSKPDFKAFGLREEDGEKYLAFE 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L     +  R ++V     
Sbjct: 259 FQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLAALRTFAGLEHRCQWV--RDL 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + +     IV+   G  +    + + G +A +   +
Sbjct: 317 DGVAYYNDSKATN-VGAALAAIEGLGADIEGKIVLIAGGDGKGADFKDLRGPVAANCRAV 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            ++        D ++I   I   +P  I  G+  EA+          DV++++     + 
Sbjct: 376 ILM------GRDSDQIGEAIGDAVP-LIRVGSLQEAVEQCRATAQPGDVVLLS-PACASF 427

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            +  N E +      I+ E+
Sbjct: 428 DMFKNYEDRGHQFVRIVEEL 447


>gi|300173070|ref|YP_003772236.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887449|emb|CBL91417.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 444

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 94/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G  GK+S    +  + +    +S+ IG  +       +++          +     
Sbjct: 107 IAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGT--GRGVPNSQFFVAEADEYRRHFKDY 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY +  +   NA    F   
Sbjct: 165 -------------------------APDYAILTNIDFDHPDYFKNIEDVTNA-FSDFANH 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K   A  + DDA+ + +  +A            +      + +          ++  G
Sbjct: 199 VKKAIFA--WGDDAHLRALRPKAT---VYYYGTSPENDDFVAENIHKSTQGSHFNVTFRG 253

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   +F  PL G+  + NAL    +     +D  L+ E+L     V  RF          
Sbjct: 254 ETLGEFSVPLFGQHSILNALAVIAVAYMEKVDLDLIREYLMTYQGVKRRFSEKQIAD--I 311

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    ++  L   R    + +II +F                 +L+ AD   +
Sbjct: 312 TVIDDYAHHPTEIDATLDAARQKYPNKQIIAIFQPHTYSRVIAYKDEFAKSLEAADKVYL 371


>gi|329734436|gb|EGG70749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU045]
          Length = 449

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 127/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S          S  YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASK---VAQEVKSDEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+T + Y NAK +++
Sbjct: 168 SSFQLLGIEEY-----------------KPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   +      Q      ++V  I+ K    + 
Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G          LPGE  + N L A    I  G+    +++ L     +  R +++GTN
Sbjct: 259 FNGIRIINTKDLVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                   +  +  +     L     + S    +++ CGG     +   +     ++  +
Sbjct: 319 R------TNKYYNDSKATNTLATQFALNSFDQPIIWLCGGLDRGNEFDELIPYMENVRVM 372

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +        E  +K            I+  +  +A+    +++   DV+++
Sbjct: 373 VVF------GETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|120437102|ref|YP_862788.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
 gi|189028993|sp|A0M526|MURC_GRAFK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117579252|emb|CAL67721.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
          Length = 452

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 124/360 (34%), Gaps = 48/360 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++  + +  + + +G        T+ +   ++D +             S L
Sbjct: 117 LAVAGTHGKTTTTAILGHLLKETGAK-----VTAFLGGISEDIQ-------------SNL 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG   V VEA     D+  L  +     + T++  DH+D +  +     +  R F   
Sbjct: 159 IMQGDKVVVVEADEF--DRSFLK-LSPNLAAITSMDADHLDIYGDKSELEKS-FREFAAK 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P++            K  +K         + +     F   + +          +    
Sbjct: 215 VPEDG-----------KLFVKNGLPVNGSSVGINDNSDFS-AQNIRIEEGSYVFDLKTPS 262

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   +  F LPG   + NA+ A  + I  G     +   L     V  RF +        
Sbjct: 263 ETIKNLKFNLPGNHNLLNAITALAMAIEYGTSIHDLTRALYSFKGVKRRFSYKIKKDH-L 321

Query: 357 RIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  + + +R +  + +++ VF                 +L   D   +
Sbjct: 322 VLIDDYAHHPTEISAVHQAVREMYPNKKVLAVFQPHLFSRTRDFAEDFASSLSDFDKVFL 381

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D  P  E P        +  +I +     I+K N  E I+T  E      V+V+ G G 
Sbjct: 382 LDIYPARELPIEGISSAWLLDKISNTNKALIQKKNLSEMIKT--EEAE---VVVMMGAGD 436


>gi|332160413|ref|YP_004296990.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607126|emb|CBY28624.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664643|gb|ADZ41287.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 460

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 139/423 (32%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 48  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRFRHG------IAVAGTHGKT 100

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 101 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 152

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 153 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 199

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  ++         
Sbjct: 200 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLN 256

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G   
Sbjct: 257 APGRHNALNAAAAVAVATEEGIEGDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAM 316

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI++VF                  L   D+ ++ 
Sbjct: 317 LVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQVDVLLML 376

Query: 417 DDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D     E P            IR     G    I   +         ++LN  D+++V G
Sbjct: 377 DVYAAGEPPIPGADSRSLCRTIRN---RGKLDPILVSDSDTVPEVLAQVLNGDDLILVQG 433

Query: 467 KGH 469
            G+
Sbjct: 434 AGN 436


>gi|303232747|ref|ZP_07319432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
 gi|302481233|gb|EFL44308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
          Length = 506

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 107/303 (35%), Gaps = 14/303 (4%)

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L+   +  S         E SS  L +        +A +  N+  DHI++H + +AY  
Sbjct: 156 GLSCCEAACSRSDDEWFCAELSSFQLAE--TSNFHPVAAALLNITPDHIEWHGSMEAYAA 213

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK ++F +L      AII  DDAY + + +R    G  VL V         +     +N 
Sbjct: 214 AKEQIFAQLTADN-LAIISRDDAYCRAIYERLCARGVPVLCVSTGADPQTQQAAYVENNI 272

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             + +         +    L GE  + N L A+ L +  G D   + + L +   +  R 
Sbjct: 273 MHIRLHNRTYTLCDVRNTKLQGEHNIQNMLTASALALFAGADVQAITDVLLQFSTLEHRL 332

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EFV        +    A  ++        +R   +G  IVV   G D+      +   + 
Sbjct: 333 EFVARIGDVDFVNDSKATNTD---AAQHALRVYDAG-KIVVLLGGHDKQTDLAALAHDVV 388

Query: 407 LDLADIAIVTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +          R     + +     AE  +     + + +  EA   A+      D 
Sbjct: 389 RKCSVAVCYGQAGSRIAQALTYELSCANAEHPNTTCTIVYEPHLREAFDAAVLHAKPGDC 448

Query: 462 LVV 464
           +++
Sbjct: 449 VLL 451


>gi|255536589|ref|YP_003096960.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342785|gb|ACU08898.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
          Length = 461

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 134/375 (35%), Gaps = 40/375 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H  N +AV GT GK++ +S V  +C+ + L          +   A++ +           
Sbjct: 109 HDTNSIAVAGTHGKTTTSSLVAHLCREAELPFSAF-----LGGIAENFK----------- 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S     G     VEA     D+  L  +       T++  DH+D +           R
Sbjct: 153 --SNFLFNGDDISVVEADE--YDRSFLQ-LSPDWAIITSIDADHLDIYGDTATIEKG-FR 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F EL+P+++   +       +     A N          +    +   +    +K    
Sbjct: 207 DFAELVPEDTQLFVRKGIDIGRPARTYAAN----------EKADFYSDNIRETGDKILFD 256

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              E G  + F + +PG   V NA  A  L    G+    +   +     +  R+    +
Sbjct: 257 FHDESGDIYLFEWEIPGIHNVENATAAIALLHTFGVSYKTLQRGISGFKGIKRRYTK-HS 315

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            S G     DYAH    L  ++ +++T     +++VVF                 +L+ A
Sbjct: 316 FSTGKIYIDDYAHHPTELNAVIGSLKTFYPDKKLLVVFQPHLFSRTRDFADGFADSLEKA 375

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-EAIRTAIEMLNKQ--DVLVVAGK 467
           D  I+ D  P  E  +         +   I+  N+   A+  A   + ++  D+L+  G 
Sbjct: 376 DDLILLDIYPARELQKNYEGVTSQWLSEKIKTENKEVAALEDAFAKIKEKNFDILLTVGA 435

Query: 468 GHETVHIVTNGEKKM 482
           G+    I+++G  + 
Sbjct: 436 GNID--ILSDGIVEW 448


>gi|210622333|ref|ZP_03293102.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
 gi|210154321|gb|EEA85327.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 142/407 (34%), Gaps = 46/407 (11%)

Query: 67  GAEAIVVSSAYSLQDF-----SATIRSNTPIL--VVDNTRKFLSLFASRLYGKHPENILA 119
           G + I+      + D      S  +  + P +  V++  ++ +          +    + 
Sbjct: 59  GIKYILGHHPEDIADIDMVVVSPGVPLDLPFIKKVIEENKELIGEVELAYELANKPYFVG 118

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GK++  S   +I +++G  ++ +G    I +   D              LS    
Sbjct: 119 ITGTNGKTTTTSLTGEIFEKAGKETYVVG---NIGNPVIDAVQAANEGASFVTELSSFQ- 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                              +   K    +  N+  DH++ H T + Y +AK R+F     
Sbjct: 175 ----------------LESIKDFKPSVSAVLNITEDHMNRHHTMENYIDAKARVFMNQ-D 217

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K    ++  DD  ++ +   A      V+      +   L+K   + N   +    E  +
Sbjct: 218 KNDFCVLNYDDELTRAL---AEKCNANVVFFS---RLEKLEKGIYVENGDIIIDIDEKIN 271

Query: 300 FD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG   + N + AA +    GID  ++ E L+    V  R EFV        
Sbjct: 272 LMKVCELSLPGGHNLENCMAAAAMAYVSGIDIEVIREVLKTFKAVEHRLEFVKEVEGVKY 331

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +        +S    ++          I++   G D+      ++     ++  + ++  
Sbjct: 332 VNDSKGTNPDSTIKAVQAYEN-----PIILIAGGYDKGSTYDELLEIAKKNVKTLVLLGQ 386

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + E+  +       G        +  EA++T  ++  + D++++
Sbjct: 387 TADKIEEAARRI-----GFTDIHRVEDMKEAVKTCHDIAKEGDIVLL 428


>gi|258514340|ref|YP_003190562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778045|gb|ACV61939.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 449

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 154/427 (36%), Gaps = 53/427 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS    L         +  I V+          A+R        ++A+TGT+GK++  
Sbjct: 69  VVVSPGVPLSVHPVVKAHSLGIEVIGEL-----ELAARFIK---APVVAITGTNGKTTTT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + +I + +G+ +   G          +                         +  E S
Sbjct: 121 SLIGEIFRNNGIKTLVAGNIGLPLVTEVEKYGPG------------------DIIVAEVS 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+       +       N+  DH+D H T Q Y  AK  ++++ L  +   ++  DD
Sbjct: 163 SFQLE--TTVHFRPNVAVILNITPDHLDRHATMQNYAQAKANIYKQQLSSD-YTVLNYDD 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPL 306
           + +  +   A     RV+    +    H+         +++  +++G +          +
Sbjct: 220 SLTASL---AVKVPGRVIFFSRK----HILDRGVFVRNEEIIAALDGDETAICRVDEVKI 272

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL +      +G+   ++   L+    V  R EFV   +    I        
Sbjct: 273 PGAHNLENALASVAAGFVLGVGRQVLANTLKTFPGVEHRLEFVAEINGVRYINDSKGTNP 332

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++    L+          IV+   G ++    +  M      +  + ++       E  +
Sbjct: 333 DAAVKGLQAYSQ-----PIVLIAGGRNKGSDFKEFMQAAKEKVRTMVVL------GECAQ 381

Query: 427 KIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           ++  A    G    I+  + I A++ A +     DV++++     +  +  N E++  + 
Sbjct: 382 ELLEAAQAVGFGNVIQATDFISAVKLAAQTARSGDVVLLS-PACASWDMFKNYEERGRLF 440

Query: 486 CDIIREI 492
            +I++++
Sbjct: 441 KEIVKDL 447


>gi|2149895|gb|AAC45626.1| D-glutamic acid adding enzyme [Staphylococcus aureus]
          Length = 450

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 130/352 (36%), Gaps = 45/352 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKP---TDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+  + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    Y +  +  +     + L    Q      ++V  I+ K    + 
Sbjct: 211 KNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQ------QEVDGIYIKDGFIV- 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G          LPGE  + N L A   CI  G+    +++ L     +  R ++VGTN
Sbjct: 259 YKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +  +    
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYM--ENVSR 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  D   S     +      G    IE  N  +A+    +++   DV+++
Sbjct: 372 EWLYSD---SRKLSLLNYGNSQG-KSVIEANNVEDAVDKVQDIIEPNDVVLL 419


>gi|82775498|ref|YP_401845.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella dysenteriae Sd197]
 gi|309787233|ref|ZP_07681845.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
 gi|109892738|sp|Q32K01|MURC_SHIDS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81239646|gb|ABB60356.1| UDP-N-acetyl-muramate:alanine ligase [Shigella dysenteriae Sd197]
 gi|308924811|gb|EFP70306.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
          Length = 491

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 141/420 (33%), Gaps = 54/420 (12%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+   S+ I ++ P +V  +  +        + A  +  +H    +A+ GT GK++ 
Sbjct: 77  RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTT 133

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V  I   +GL    +      ++                  ++       + +    
Sbjct: 134 TAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------RYLIAEADESDASFL---- 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       ++ +    TN+  DH+D +Q            F   LP    A++  D
Sbjct: 184 -----------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVD 232

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           D   +E++ R      +  + G+ +   + ++    I  +   T+  + K+        P
Sbjct: 233 DPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPIRVTLNAP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IY 359
           G     NA  A  +    GID   +L  LE       RF+F+G       N + G   + 
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLAPVNGKSGTAMLV 349

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    ++  +K  R       ++++F                  L   D  ++ + 
Sbjct: 350 DDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEV 409

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
            P  E P  I       +   I    +I+ I         EML       D+++V G G+
Sbjct: 410 YPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|313206530|ref|YP_004045707.1| udp-n-acetylmuramate/alanine ligase [Riemerella anatipestifer DSM
           15868]
 gi|312445846|gb|ADQ82201.1| UDP-N-acetylmuramate/alanine ligase [Riemerella anatipestifer DSM
           15868]
 gi|315023529|gb|EFT36533.1| UDP-N-acetylmuramate--L-alanine ligase [Riemerella anatipestifer
           RA-YM]
 gi|325336021|gb|ADZ12295.1| UDP-N-acetylmuramate-alanine ligase [Riemerella anatipestifer
           RA-GD]
          Length = 452

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 121/363 (33%), Gaps = 50/363 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S V  +C+             + S F         S           
Sbjct: 114 IAVAGTHGKTTTSSLVAHLCKE---------VNLSFSGFLGGIAENFGS---------NF 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  VEA     D+  L+ +       T+   DH+D +  +        R F  L
Sbjct: 156 IFNGKDYSVVEADE--YDRSFLN-LAPDWAIITSTDADHLDIYGDKSTIEKG-FRDFAHL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           + +E            +  +++  N    V +    +    +  ++    +         
Sbjct: 212 VSEER-----------QLFVRKGINLDRSVTTYAVNEKADYYSDELRLEGDSISFNFYTP 260

Query: 297 -GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+   F + +PG   V NA  A  +   +G+    + E L K   +  R+        G
Sbjct: 261 YGETQRFSWEIPGIHNVENATAALAVLHKMGVSLEDLKEALSKFRGIKRRYTK-HIFPNG 319

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH    L  ++ +IRT     +++VVF                 +L   D  +
Sbjct: 320 KIYIDDYAHHPTELNAVIGSIRTFYPDKKLLVVFQPHLFSRTRDFADDFAKSLSQGDELM 379

Query: 415 VTDDNPRSE---DPEKIRAE--IIHGIPGFIEKGNRIEA---IRTAIEMLNKQDVLVVAG 466
           + D  P  E   D E I ++  +        E  +  EA   I+         D+L+  G
Sbjct: 380 LLDIYPARELQKDFEGISSDWLLEKVTLADKEVSSLSEAFGKIKN-----KNFDILLTVG 434

Query: 467 KGH 469
            G 
Sbjct: 435 AGD 437


>gi|319789935|ref|YP_004151568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114437|gb|ADU96927.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
          Length = 413

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 151/429 (35%), Gaps = 62/429 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A+V S     ++          I V             R       + ++VTGT+GK
Sbjct: 40  GIAAVVKSPGVPPRNPLLEKAKRAGIPVYGEV-----ELGYRFS---SGSFISVTGTNGK 91

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+  + +    + SG  SF  G      S                     L +   +  +
Sbjct: 92  STTTAVIYHALKLSGRESFIGGNYGIPLSTF------------------ALDTTEESFTA 133

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  ++   L   +     F N+  DH++ + + + Y  AK+RL    L     A++
Sbjct: 134 LELSSFQIED--LTSFRSRVSVFLNVTPDHLNRYSSFEEYREAKLRL----LDFSDCAVV 187

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FP 305
             DD   K +  +       + +           +V          +   G    +   P
Sbjct: 188 NGDDPSFKHLKGKLG-----IYTFSVSTDSGADARVEGEL------LVFSGYRIPYRELP 236

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--A 363
           L G   + N L A      +G+    + E  +    +P R E VG   +GG ++V+   A
Sbjct: 237 LKGIHNLENYLAALVALAVVGLSEEEIYEGFKAFKGLPHRCEVVG--RKGGVVFVNDSKA 294

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++++  L++ R+      +V+   G D+    + +   +   +  +  +       E
Sbjct: 295 TNPDAMKKALESFRS------VVLIAGGSDKGLDFKELKPLVKSRVKALVAI------GE 342

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              K+  E        +   +  EA+  A  +   + V++++  G  +  +  N +++  
Sbjct: 343 TAGKLV-ETFKEETYVLTASSMEEAVERAYALAGDEGVVLLS-PGCASFDMFKNFQERGE 400

Query: 484 VDCDIIREI 492
              + ++ +
Sbjct: 401 RFREAVKRL 409


>gi|330448820|ref|ZP_08312467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493011|dbj|GAA06964.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 450

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 115/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ AS +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVMAVSGTHGKTTTASMLAWILEDCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLKAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +         E ++    +    +     G   H +      +     
Sbjct: 207 LV-RTVPGNGRILAPKGVKNIDETLEMGCWSELEYI-----GGDGHWRAEKHREDGSVFD 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G +     +PL G+  V NAL+A      +G+   L  E L K      R E  G 
Sbjct: 261 VYLDGDNVGTVRWPLVGDHNVNNALMAIAAARHVGVTPDLACEALAKFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
            + G  +Y D+AH   ++E+ L  +R       I+                  +A  L  
Sbjct: 320 EANGVTVYDDFAHHPTAIELTLGGLRAKVGDSRILAVLEPRSNTMKLGVHKDDLAPSLHA 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRI-EAIRTAIEMLNKQDVLVVA 465
           AD             P  I     EI           + + E ++  +E     D ++V 
Sbjct: 380 ADEVFFFQ-------PPNIPWSVEEIAQQCSQPAYSSDDLDELVKRIVEQAKPGDTILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|310828116|ref|YP_003960473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
 gi|308739850|gb|ADO37510.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
          Length = 458

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 115/321 (35%), Gaps = 27/321 (8%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +        A         ++  + +A +  NL  DH+D + T + Y  AK R+FE  
Sbjct: 156 VMEAAPEDVFVAEISAFQLETINKFRPVASAILNLSPDHMDRYGTMENYIAAKARIFENQ 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              E   ++ ADD    E+ ++A    CR             KKV          I +  
Sbjct: 216 -RGEDFLVLNADDEQVCELGRQAQ---CRKYYFSLD------KKVAQGAYAMDGGIFIND 265

Query: 298 KDFDFLFPLPGE------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +         E        V NAL A  L   +G+D   + E L+    V  R EFV T
Sbjct: 266 NESVIPICRIEEMGIKGPHNVQNALAATVLAYFMGVDVVSIAETLKSFGGVEHRQEFVAT 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 I       +N+  + L  +        +++   G D+ +     +  +   +  
Sbjct: 326 IGGVDYINDSKGTNTNAAIVALNAMTK-----PVILIAGGYDKKEDYSEFIEVVCKKVKR 380

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + +V    P+ E   +       G    +  G+  EA++ A E     DV++++     +
Sbjct: 381 MVLVGATAPQIEAAAE-----SQGYYSTVRVGDYDEAVKVASECAAPGDVVLLS-PACAS 434

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
             +  N E +  V  D+++ I
Sbjct: 435 WDMFDNFEIRGQVFKDLVKRI 455


>gi|260770966|ref|ZP_05879895.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
 gi|260614203|gb|EEX39393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
          Length = 456

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 117/363 (32%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +   +LAV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 YDRWVLAVSGTHGKTTTSSMLAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    DA   +V++R           G QG++   K      +  Q  
Sbjct: 207 LV-RTVPGNGRILAPRQDAALADVLRR--GCWSETEFSGEQGEWQAEK---ICKDGSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L GE  V NAL+       +G+   L  E L        R E  GT
Sbjct: 261 VLHQGERVGTVTWDLVGEHNVNNALMTIAAARHVGVTPDLACEALGSFINTKRRLELKGT 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L+ +R     R I+            G        +L  
Sbjct: 321 E-NGVTVYDDFAHHPTAIELTLEGLRNKVGDRKIIAVLEPRSATMKLGVHKETLAASLAA 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNR-IEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     ++           +   E +    +     D ++V 
Sbjct: 380 ADSVYLFQ-------PSNIPWAVQDVADQCSQPAHVSDNMAEFVAQICQEAQPGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|313608536|gb|EFR84427.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes FSL
           F2-208]
          Length = 380

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 147/419 (35%), Gaps = 60/419 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 8   EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 58

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG  +   +                        +G  + ++EA  +   +H L
Sbjct: 59  IRPTSYLIGDGTGSGT------------------------KGAEYFALEACEYQ--RHFL 92

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 93  AY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--AELRKL 145

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
           + +        G + +F   K V       +  +   G+    F  P  G+  V NAL  
Sbjct: 146 SLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSV 204

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V + L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 205 IALCDYEGLPVEDVKKELKTFEGVKRRFSI--TEKANQVLVDDYAHHPSEIRATVNAARQ 262

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 263 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 322

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             G   I++ +  E ++        + V++  G G   V       +K+ +D +++ E 
Sbjct: 323 TKGNHIIKEEHTEELLKY------PEAVILFMGAG--DVQKFQAAYEKV-LDHEVLTEA 372


>gi|254465031|ref|ZP_05078442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
 gi|206685939|gb|EDZ46421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
          Length = 463

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 137/442 (30%), Gaps = 50/442 (11%)

Query: 65  AQGA----EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--P 114
             GA     A++ S      Y   +          + V ++   F   FA   +  H  P
Sbjct: 60  KAGAFDDVAALITSPGIPHLYPKPNPVIRAALEAGVPVDNDIGLFFRSFADADWQMHDQP 119

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AVTG++GKS+  + +  I Q +G  S   G                         L
Sbjct: 120 PRVVAVTGSNGKSTTVALLHHILQEAGRESQLAGNIG-------------------RGVL 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     V +E SS+  +  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 161 DIDPPGEGGVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218

Query: 235 EE--LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            E       S +       +   V + + +      +    G    +       ++ +  
Sbjct: 219 AEADRTAPSSASTRTRGCFWRPAVRRASDDRVIASRARKLTGPGWQVFARKGFLSEYRKG 278

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 D   +  LPG     NA  A      +G+   ++ + +     +P R + +   
Sbjct: 279 RQAASIDLREMTGLPGAHNHQNACAAYAAARTLGLAPRVIGDAMATFPGLPHRSQTIAEA 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    +    A   +S    L   + I     I     G ++D G   + G+        
Sbjct: 339 AGVRYVNDSKATNLDSAVKALSAFKNIR---WIC---GGLEKDGGLEALKGQTGNVQKAY 392

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            I         +      ++               A+  A+      D +++A     + 
Sbjct: 393 VI-------GREAAGFALQLD---VEAEVCTTMAAAVERAMADAQAGDTVLLA-PAAASF 441

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
               N E++       ++  LG
Sbjct: 442 DQYDNFEQRGEDFVAEVKRRLG 463


>gi|291327122|ref|ZP_06127070.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rettgeri DSM 1131]
 gi|291311637|gb|EFE52090.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rettgeri DSM 1131]
          Length = 448

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 113/364 (31%), Gaps = 35/364 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +      +     SP ++ +
Sbjct: 89  PERWVLAVAGTHGKTTTAGMLAWILEDCGYKPGFL--IGGVPGNFDVSAKIGESPFFVIE 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D  +  +A       
Sbjct: 147 ADEYDCAFFDKRSKFVHYS------------PKTLVLNNLEFDHADIFENLEAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P         +D + K+V+     +   ++     G+    +     H+     
Sbjct: 195 LV-RIVPASGKIFTPDNDNHLKQVIGMGCWSEQELVG----GEHGGWQAEKLSHDGSHFA 249

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + +   +  +   G   + NAL+A      +G+        L+       R E  G 
Sbjct: 250 VYYQQEKVGEVTWSQVGNHNIQNALMAIAAAHHVGVPVKEACLALDSFINARRRLELRGV 309

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALD 408
              G  +Y D+AH   ++   L+ +R+   G  RI+ V          G        AL 
Sbjct: 310 E-NGVSVYDDFAHHPTAILATLEALRSKVGGTSRILAVLEPRSNTMKMGINKNDIAPALG 368

Query: 409 LADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVV 464
            AD   +         P  I     +I             IEA     IE     D ++V
Sbjct: 369 RADEVFLFQ-------PANIPWMVTDIAEKCVQPARWSADIEAFTNMIIETAQPGDHILV 421

Query: 465 AGKG 468
              G
Sbjct: 422 MSNG 425


>gi|296122916|ref|YP_003630694.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015256|gb|ADG68495.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
          Length = 871

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 137/381 (35%), Gaps = 36/381 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTG +GK++ +  V  I +++G+    +G  ++     +D  +          A +
Sbjct: 478 PLVCVTGVNGKTTTSRLVASILRQAGIK---VGVATSDGIVVEDRVIELGDCAGPKSARA 534

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHIDYH--QTQQAYFNAKMR 232
            L +  V    +EA   G+ +  L   K      TNL   DH+  +   T +  ++ K R
Sbjct: 535 VLLNPTVEAAVLEAGRGGILREGLGFDKCDVAVVTNLSEPDHLGEYDIHTVEKMYSVK-R 593

Query: 233 LFEELLPKESPAIIYADDAYSKE--------VMKRAHNAGCRVL----SVGYQGKFIHLK 280
              +++     A++ A D +  +        V+  A +    VL    S G +  F+   
Sbjct: 594 TPVDVVMPGGFAVLNAADPWVAKMSTLSAGGVIFFARDERQPVLSQHRSEGKKVVFVRDG 653

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            + A        I V   D          FQ+ N L A      + I  + +   L+   
Sbjct: 654 WIVAGDGGLSSQI-VRLADVPCTHGGRIGFQIDNVLAATAAAWGLKIPFSAIAAGLQHFQ 712

Query: 341 VV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 PGRF       +   + V  A   ++L+  +  +   +S R +VV+    DR  
Sbjct: 713 GNLADDPGRFNVFQLGGK--TLIVVDARNPSALKATIAGLEAFSSQRKLVVYAAENDRIH 770

Query: 397 GKRPIMGKIALDLADIAIV---------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
                 G++  +      +           D PR      IRA           + +  +
Sbjct: 771 SDITQQGELLAEHFQNFYLYHLPGCATTGADAPRELLLASIRATADSEKLCVNLEEDWQK 830

Query: 448 AIRTAIEMLNKQDVLVV-AGK 467
           A+  A     + DVL++ AG 
Sbjct: 831 AVDAAWHDFREGDVLLIQAGA 851


>gi|261211101|ref|ZP_05925390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
 gi|260839602|gb|EEX66213.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
          Length = 451

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDTALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
 gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
          Length = 813

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 149/443 (33%), Gaps = 45/443 (10%)

Query: 30  INEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           I+++  D+R I  +  +F A+ G ++DGH F+      GA+  +V   +           
Sbjct: 25  IDQIVIDTRRIYASNALFAALKGQRQDGHSFVS---GSGAKFALVEKHWE------GPAD 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +L VD+        A     +   N++AV G+ GK+ V   ++ +   S        
Sbjct: 76  GPSLLKVDDPLTAFQEIAGSYRSQLRGNVIAVIGSYGKTMVKDLLRHLLSSS-------- 127

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIAG 207
              T++S  +        P+ L  A    +      +     SH  +  RL   I+    
Sbjct: 128 --FTVASSPESFNSQVGVPLSLLGA----AKAHEQVIIEAGFSHPGEMARLCKIIRPSHI 181

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++G  H+    +++             L  ++   +   D     + K         
Sbjct: 182 ILTHVGNKHLHTIGSKEQIAQEMCHF---SLSSDASWTLLPKDPILSPLPK--------- 229

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
               +     +L       N + +T+    G     L PL   + +    +       +G
Sbjct: 230 -PYYWDTPQPNLPHASFHENSKAITVQFPKGDAHTILRPLGMSYILDLINIGLKAAYLLG 288

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385
           +    +++ L+     P   E   + +    I   Y     SL+  L+        G+  
Sbjct: 289 VPEKQIVDALKTYQPEPMSTEIWKSQNGATFINETYCEDPQSLDCALRRFDFHSPKGKKT 348

Query: 386 VVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           ++F      D      +G+ I   + D  ++ + + + E   K  A              
Sbjct: 349 LLFSGIKQNDPALDARIGEAIGNSMPDTLMLIEPSFQLEHAVKTIAPQ----TAIRHFST 404

Query: 445 RIEAIRTAIEMLNKQDVLVVAGK 467
              A++     +  +D+L+V GK
Sbjct: 405 VEAALKDHAGSMRPEDILIVKGK 427


>gi|313607760|gb|EFR83977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria monocytogenes FSL F2-208]
          Length = 115

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 63/106 (59%), Gaps = 4/106 (3%)

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
            GCGGDRD+GKRP M KIA+D A   I T DNPRSE+P  I  ++I G+P    ++   N
Sbjct: 1   VGCGGDRDKGKRPQMAKIAVDYASNPIFTSDNPRSENPHAIIEDMIQGVPNSDSYVVHEN 60

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           R +AIR A+      DV+++AGKGHE   ++ + E     D    R
Sbjct: 61  RRDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD-EVIDFDDRVEAR 105


>gi|162455913|ref|YP_001618280.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161166495|emb|CAN97800.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 495

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 138/397 (34%), Gaps = 34/397 (8%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           T    +L    L G+ P   L V GT GK++ +S    I   +G     +      +  A
Sbjct: 89  TTMAHALADHMLAGRSP---LVVAGTHGKTTTSSMCAWILHEAGRDPGFLIGGLPKNFEA 145

Query: 158 QDNRLTTPSPIYLAKALSYLSSQG--------VTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                 + S     + L  L   G        V       ++      +    +   G  
Sbjct: 146 SFRLPRSASSASDRRGLPLLGEAGAGRRRTPFVVEGDEYDTAFFEKTPKFWHYQPEVGVV 205

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T++  DHID +    +Y  A  R F E +P+    +  A D    E++ R  +A   V  
Sbjct: 206 TSMEHDHIDIYPDAASYEAA-FRGFVERIPETELVVAAAHDPRVVELVSR--SARAEVAW 262

Query: 270 VGYQGKFIH-------LKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGL 321
              +G   H            A  + Q   +   G     F   +PG   V NA+ A   
Sbjct: 263 FALEGDDTHGRPPHWLAAPAEAGESGQSFDLYAGGVLAGRFALQMPGHHNVRNAIAAIAA 322

Query: 322 CIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
                G+  +     L     V  R + +   +RG R+Y D+AH   +++  L+ +R+  
Sbjct: 323 AAQGFGVPLSTATTALAGFAGVRRRQDLLF-EARGVRVYDDFAHHPTAVDETLRALRSRH 381

Query: 380 TSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIV----TDDNPRSE--DPEKIRAEI 432
            +G +  VF                  A + AD  ++      D    E  D +++  +I
Sbjct: 382 PAGALWAVFEPRSATACRALHQEPYARAFEAADRVVLAPLGRPDIAAGERLDLDRLVRDI 441

Query: 433 IHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
             G        + ++AI TAI     + D + +   G
Sbjct: 442 ERGGKRAEAAAS-VDAIVTAIARDAREGDTIALLSNG 477


>gi|126735378|ref|ZP_01751124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
 gi|126715933|gb|EBA12798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
          Length = 466

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 144/410 (35%), Gaps = 52/410 (12%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
             ++VS      Y + +       +  + V ++   F   FA+  +        ++AVTG
Sbjct: 68  ACLIVSPGIPHLYPVPNPVIAAAWDAEVPVDNDIGLFFRSFATASWDDFDTQPRVIAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ A+ +  I   +G  +   G                         L    +   
Sbjct: 128 SNGKSTTAALIHHILVENGRPAQLAGNIG-------------------RGVLDIEPAHDG 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 169 EVVVLELSSYQTDLAR--SMTPDVAVFTNLSPDHLDRHAGVGGYFAAKRRLFAEGGPDRA 226

Query: 243 PAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-- 298
              +  D+A  + +  +        RV+ V   G+ +  +       K  ++   +G+  
Sbjct: 227 VIGV--DEAEGRYIANQLIEGPGDDRVIRVS-SGQKLAGQGWTVFARKGFLSEHRKGRQV 283

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D   +  LPG     NA  A   C  +G+    +   ++    +P R + V    R 
Sbjct: 284 GSIDLRVITGLPGAHNHQNACAAYAACRTLGLGPKGIEAAMQSYPGLPHRSQVVAE--RD 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G  +V+ +  +N ++   K ++     R I           G  P +  +A       I 
Sbjct: 342 GVTFVNDSKATN-VDSAAKALQAFPKVRWICGGLQKEGGLDGLLPHLDHVAKAY---VI- 396

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   + E    +++          +   A+  A       +V+++A
Sbjct: 397 ------GREAEDFARQLMGAEAEVCGTMDV--AVSQAAADAQAGEVVLLA 438


>gi|308069882|ref|YP_003871487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
 gi|305859161|gb|ADM70949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
          Length = 473

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 142/415 (34%), Gaps = 57/415 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V +                 I VV        L            I+ +TG++GK
Sbjct: 72  GVKLVVKNPGIPYTAPPVQKAVELGIEVVTEVEVAYHL--------CKAPIIGITGSNGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  ++V ++ + SG++    G    I +   +  +   S  ++   LS    +G     
Sbjct: 124 TTTTTWVGKLLEASGMNPIVAG---NIGTPVCEAAVDAKSDEWMVVELSSFQLKG----- 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                           +       N+   H+DYH   + Y  +K RLF      +  A++
Sbjct: 176 ------------TKDFRPTVACLLNVAETHLDYHGGMEDYVASKARLFANQTAAD-TAVV 222

Query: 247 YADDAYSKEVMKRAHN-----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             DD   +E++          +    L  G      ++  V     +  V     G    
Sbjct: 223 NWDDPVCRELVPYIKAKLLPFSMTERLQEGVFADPPYIPDVTDDIERSIVYRDGNGVLHP 282

Query: 302 FL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +      LPG F V NAL A  + IA G + A + E L     V  R E+V      G 
Sbjct: 283 IIGVAEIGLPGRFNVENALAACAIAIAAGAEPANLAEPLSTFRGVEHRLEYVLE--HAGV 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y + +  +NS +  +  + +    + IV+   G DR      ++  +   +  + ++  
Sbjct: 341 AYYNNSKATNS-KATMMALSSF--KQPIVLIAGGLDRGSDYTELVPSLQEGVKAVVLL-- 395

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNR--------IEAIRTAIEMLNKQDVLVV 464
                E   K+           ++  +         +EA+  A E     DV+++
Sbjct: 396 ----GETRHKLAERAQQAGIEHVKVVDNGEDAAATLVEAVNKAAEFAETGDVVLL 446


>gi|153809194|ref|ZP_01961862.1| hypothetical protein BACCAC_03505 [Bacteroides caccae ATCC 43185]
 gi|149128170|gb|EDM19390.1| hypothetical protein BACCAC_03505 [Bacteroides caccae ATCC 43185]
          Length = 458

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 123/370 (33%), Gaps = 49/370 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T    DH+D + T+QAY  +   
Sbjct: 155 --NLLLSQKSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTEQAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYNYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G+    + + +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKKGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-VVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--------- 461
           D  I+ D  P  E P       I GI   +   N    I     M  K+D+         
Sbjct: 383 DEVILVDIYPAREAP-------IPGITSKLIYDNLRPGIEK--SMCKKEDILNILKDKNI 433

Query: 462 -LVV-AGKGH 469
            +++  G G 
Sbjct: 434 EVLITLGAGD 443


>gi|302550798|ref|ZP_07303140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468416|gb|EFL31509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 157/440 (35%), Gaps = 56/440 (12%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G+E IV +  +      F+A  R+  P+    +        A RL G      LAVTGT+
Sbjct: 73  GSELIVTAPGWKPDKPLFAAADRAGVPVW--GDV-----ELAWRLRGPDAAPWLAVTGTN 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I   +GL +  +G                     ++   + L  +    
Sbjct: 126 GKTTTVQMLASILTAAGLRTAAVGNIG------------------VSLLDAVLGEEPYDV 167

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E    + +  
Sbjct: 168 LAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYEG--NRVACV 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
              AD A    V +     GCR +             +       +  +    K+   L 
Sbjct: 224 YNVADKATEDLVREADVEEGCRAIGFTLGTPAPSQLGIVEGILVDRAFVENRQKNAQELA 283

Query: 305 PL-----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +     P    + NAL AA L  A G+ +  V + L        R   V        + 
Sbjct: 284 EVADVDPPAPHNIANALAAAALARAFGVPAQAVRDGLRAFTPDAHRIAHVADVDGVAYVD 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A  +++ E  L    +      IV    G  +      ++ K A  L    ++  D 
Sbjct: 344 DSKATNTHAAEASLAAYES------IVWIAGGLAKGATFDELVAKSAPRLRGAVLIGADR 397

Query: 420 PRSEDPEKIRAEIIHGIPGF-IEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETV 472
                 E IR  +    P   +   +R        A++ A  +    D +++A     ++
Sbjct: 398 ------ELIREALARHAPEVPVVDLDRTDTGAMRAAVQEARRLARTGDTVLLA-PACASM 450

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            +  N  K+     D +RE+
Sbjct: 451 DMFANYNKRGDAFADAVREL 470


>gi|160896915|ref|YP_001562497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
 gi|160362499|gb|ABX34112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
          Length = 650

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 153/421 (36%), Gaps = 58/421 (13%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
             L   ++    +    +L +TGT+GK++V S   Q+ + +GL     G    I     D
Sbjct: 253 MALKALSAAHGYRP--TVLGITGTNGKTTVTSLTGQLLEHAGLRVAVAG---NIGPTLLD 307

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                     L +A             +E SS  LD   +   +  A +  N+ +DH+D+
Sbjct: 308 TLTQAIDAETLPQA-----------WVLELSSFQLD--GVQMFEPTAAAVLNITQDHLDW 354

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--------KRAHNAGCRVLSVG 271
           H + +AY +AK  +F          ++  +D     ++        KR        ++ G
Sbjct: 355 HGSLRAYADAKACIF----GSSGTMVLNREDPEVMRMLPAPVVPPGKRQKPQQRAHITFG 410

Query: 272 -----YQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYN 314
                  G F    +  +  +    +   + +GK+ + L            + G     N
Sbjct: 411 GDMPRRPGDFGLEVVSGMTWLVRAHEADETAKGKNAEDLYIQRLMPADALRIRGRHNAIN 470

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L  A G   A +L  L +    P R + +G    G   Y D   T+  +   + 
Sbjct: 471 ALSALALASAGGCTLAPLLYGLREYRGEPHRVQPIG-RVNGVEYYDDSKGTN--VGATVA 527

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +  +     IVV   G  + Q   P++  ++  +    ++        D  +IRA +  
Sbjct: 528 ALSGLGPDHRIVVILGGDGKGQDFSPLVAPVSRHVRTAVLI------GRDAGRIRAALQD 581

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                ++     +A+  A    ++ D ++++     ++ +  N E +     D +R  L 
Sbjct: 582 CGVPLVDATTMADAVELAASRAHEGDAVLLS-PACASLDMFRNYEDRAHQFVDAVR-ALA 639

Query: 495 L 495
           L
Sbjct: 640 L 640


>gi|317968396|ref|ZP_07969786.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CB0205]
          Length = 460

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 141/432 (32%), Gaps = 63/432 (14%)

Query: 62  QAIAQGAE---AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            AI  G     A+VVSSA    +       R+   +    +    L   A+       + 
Sbjct: 46  DAIRSGTSCPPAVVVSSAVPANNPELLEAERAGLKVWHRSDVLAAL--IAA-------QP 96

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            ++V G+ GK++ ++ V  +   +      +     + +FA + R        L      
Sbjct: 97  SISVAGSHGKTTTSTLVASLLHATNHDPTAV-IGGVVPAFASNGR--NGDGPLLVAEADE 153

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                V             Q  L       G  TNL  DH D++    +         + 
Sbjct: 154 SDGSLVKF-----------QSWL-------GVITNLELDHTDHYSDLASLITT----LQR 191

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   +   D    +E  +  H    +      +G            ++   T   +
Sbjct: 192 FAKGSEQLLANRDCPVLREHFQAHHWWSIQ----SSEGVDFAAIADELDGDRTLATFYEQ 247

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  PLPG   + NA  A   C   G+  A +   +E L     RF++ G N  G
Sbjct: 248 GEALGQFRLPLPGLHNLSNAAAAMAACRLHGVSFAELQRAVEGLQAPGRRFDYRG-NWCG 306

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI----------TSGRIIVVFGCGGDRDQGKRPIMGKI 405
            ++  DYAH  + ++  L   R +             R++VVF         +       
Sbjct: 307 RQVVDDYAHHPSEVQATLAMARLMVSSGRSPLPEAPQRLLVVFQPHRYSRTAEFLSDFAQ 366

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAI-EMLN 457
           AL  AD  ++       E P        + AEI    PG  +   + +E +  AI +   
Sbjct: 367 ALSQADAVLIAPLYTAGEAPIPGISSAALAAEIQRIAPGLPVSAFDDLETLADAIGQTSQ 426

Query: 458 KQDVLVVAGKGH 469
             D+++  G G 
Sbjct: 427 AGDLVLAMGAGD 438


>gi|76880190|dbj|BAE45866.1| UDP-N-acetylmuramate-alanine ligase [Physcomitrella patens]
          Length = 615

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 83/463 (17%), Positives = 148/463 (31%), Gaps = 80/463 (17%)

Query: 56  GHLFIPQAIAQGA---EAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           GH  + Q + QG+   +A+VVSSA     ++  A    N PI    +   +L        
Sbjct: 167 GHS-VAQLVPQGSQPPDAVVVSSAVGPGNEEVEAARALNVPIYKRGD---WLGKITEGY- 221

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++AV GT GK++  + +  + +  G     I   + +  F         +    
Sbjct: 222 -----QLIAVAGTHGKTTTTAMLSVVLRNLGEDITAI-VGAQVPQFPDGGSALCGTTRKF 275

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L      G                   G+       TN+  +H+D    ++A  N  
Sbjct: 276 V--LEADEYDGCFL----------------GVSPHLAVLTNVEWEHVDMFPDEEAVKNMF 317

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-----------CRVLSVGYQGKFIHL 279
            +   ++ P     +   D A +K V+                   RV++ G        
Sbjct: 318 KKFVLQIKP-GGCLVACGDSAGAKSVLGLIEEEQEKDLGSPFPRERRVVTFGLGASDWRA 376

Query: 280 KKVCAIHN-KQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL---- 333
             +          T+  + +        LPG + V N+L    +   +  +    +    
Sbjct: 377 IMLVPNPQGGTDYTVVYKNRPMTRVSLRLPGMYNVLNSLAVIVVMSLLAAEKESDVGAQA 436

Query: 334 -----------EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
                        L     V  RF+FVG +  G  I  DYAH    +  +L+  R     
Sbjct: 437 KLMKRTAEAAGRALGAFSGVRRRFDFVG-SVHGCHIIDDYAHHPTEVRAVLQAARQRYDQ 495

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIR--AEIIHGI-- 436
             I V+F                 A   AD  IVT        P EK+    ++ + I  
Sbjct: 496 QPIWVIFQPHTVSRLAAFLPDFAPAFSAADRVIVTQVYAARNIPTEKVVTGEDLANAIIG 555

Query: 437 PGFIEKGNRIEAIRT------AI---EMLNKQDVLVV-AGKGH 469
           P  +   +    +        A+   EM ++ +++++  G G 
Sbjct: 556 PPAVYIPDLDVVVERLSWELAALDKNEMNDRGNIVLLTLGAGD 598


>gi|253828104|ref|ZP_04870989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511510|gb|EES90169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 478

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 135/357 (37%), Gaps = 42/357 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+AVTG+ GK+S+ +F+ Q+ Q            +T++    D      S   +  
Sbjct: 153 PNLTIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDI-- 210

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              Y+   G       A   G  +  ++ IK        +G  HI+Y ++    + AK  
Sbjct: 211 ---YIVEAG-------ARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYE 260

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + +   P       Y D+   +            V SV                N    +
Sbjct: 261 ILQS--PNLQKVYNYKDNTPPQNFYGNMIWFPQNVSSVDTS------------LNGTSFS 306

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++  G+  DF   + G F V N   A  +    GI S  +++ + ++  V  R   +  N
Sbjct: 307 LTYNGEKMDFETKILGAFNVANISAAIQVAKDFGISSERIIKQVCRMEGVSHRLSKIMVN 366

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +   + +D ++  N L+ +L+ IR  ++  GR ++V     +  +     + +    + 
Sbjct: 367 DK---VILDDSYNGN-LDGMLEAIRLSSLYDGRKVIVTPGLVESSKEANIALAEAIDRVF 422

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--EAIRTAIEMLNKQDVLVVA 465
           DIAI+T      E   K+  E IH  P  I   ++   E I  +  M    D+++ A
Sbjct: 423 DIAIIT-----GELNSKLLKEHIH-KPQKIILKDKKNMENILKSATMA--GDLILFA 471


>gi|82542695|ref|YP_406642.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii Sb227]
 gi|187730669|ref|YP_001878901.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii CDC
           3083-94]
 gi|109892737|sp|Q326E4|MURC_SHIBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620431|sp|B2U296|MURC_SHIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81244106|gb|ABB64814.1| UDP-N-acetyl-muramate:alanine ligase [Shigella boydii Sb227]
 gi|187427661|gb|ACD06935.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii CDC 3083-94]
 gi|320183622|gb|EFW58465.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098948|gb|EGJ03899.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 3594-74]
          Length = 491

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFLGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|283783547|ref|YP_003374301.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis
           409-05]
 gi|297243805|ref|ZP_06927735.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis AMD]
 gi|283441804|gb|ADB14270.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis
           409-05]
 gi|296888226|gb|EFH26968.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis AMD]
          Length = 520

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 144/439 (32%), Gaps = 62/439 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +          I +V  +   L+L  S   G      + V G  GK+
Sbjct: 93  ADVLVYSSAIKPSNPEIMAAHERGIKLVHRS-DILALLLSAKTG------VTVAGAHGKT 145

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +S +  I   + +      P+  I    Q    T     +    +  ++    +  S 
Sbjct: 146 TTSSLLSHILTVAAVGD-LADPSYAIGGSIQAADGTVLDGGHAGNGIVMVAEADESDGSF 204

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E  S                  TN   DH+D++ + + Y  A     E +    +  II 
Sbjct: 205 EKYS------------PSIAIVTNAEADHLDHYGSSERYREA---FVEHVSHAVNNVIIC 249

Query: 248 ADDAYSKEVMKRAHNAGC-RVLSVGYQGKF----------------IHLKKVCAIHNKQQ 290
           A+D  +++V++   +    + ++ G    +                I  +   A+  ++ 
Sbjct: 250 AEDEGARKVLEAMPDNILNKTIAYGNLDTWSLKLSSRVQKLAIFASIEHENEQAVSGREM 309

Query: 291 VTISVEGKDFD----------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            T+ +  K  D              +PG     NA  A    + +G++        E   
Sbjct: 310 FTLVLPEKILDEHTKCSNKVQVSLLIPGLHNALNASAAIVAAVLLGMNPENAARGAESFR 369

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKR 399
               RF+  G    G  +  DYAH    +  +L    R  TS  + V+F           
Sbjct: 370 GASRRFDIRGC-VDGVTVVDDYAHHPTEIAALLRAARRKYTSSTLRVLFQPHLFSRTQAF 428

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEK---IRAEIIHGIPGFIEKGNRIEAIR------ 450
                 +L LAD  IVT   P  E  E    I AE I           +IEA+       
Sbjct: 429 ANEFAKSLALADDVIVTGIFPAREKQEDFPNINAETIVKAAKSQNLDVKIEAVDDMRAAA 488

Query: 451 -TAIEMLNKQDVLVVAGKG 468
                     DVL+  G G
Sbjct: 489 LKLALRAKSGDVLLTVGAG 507


>gi|77166314|ref|YP_344839.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
 gi|122063251|sp|Q3J787|MURD_NITOC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76884628|gb|ABA59309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
          Length = 453

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 96/466 (20%), Positives = 170/466 (36%), Gaps = 61/466 (13%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDG----HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            DSR    G +  A+     D       F   A+   AE +VVS   +L + +       
Sbjct: 40  MDSRKSPPG-L-AALQEQNPDAVLRLGGF-DAALIAEAEQLVVSPGVALSEPAILAARAR 96

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I VV +      LFAS +       ++ +TG++GKS+V S ++ + +++G      G  
Sbjct: 97  GIPVVGDIE----LFASYVK----APVIGITGSNGKSTVTSLLEAMARQAGRQVLAGGNL 148

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T                    AL  L         +E SS  L+      +  +A    
Sbjct: 149 GT-------------------PALELLEKPVPDLYILELSSFQLE--TTYTLDAVAACVL 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R++          +I ADD     +++   +  C   ++
Sbjct: 188 NISPDHMDRYPDLDAYCQAKARIYRG----TGTMVINADDFRVASLVQ--PHRPCLRFTL 241

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGI 327
           G      +  +  A       T  V G +        PL G   + NAL A  L  A+G+
Sbjct: 242 GMPAVDEYGLQERAGE-----TWLVRGHERLLSARRLPLAGRHNLANALAALALGEAVGL 296

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +L  L+    +P R E++     G R Y D   T+  +   +  I  I     +++
Sbjct: 297 PRAAMLSALQAFSGLPHRCEWL-AEVNGVRWYNDSKGTN--VGATVAAIEGIPCQGKLIL 353

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              G  +     P+   +      + ++  D  R E        ++   P      +  E
Sbjct: 354 IAGGVGKGADFSPLSKPLIQRARAVVLMGQDASRLE-------AVLASGPPLYRVNSMDE 406

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           A+  A  +    D ++++     +  +  + E +       +REIL
Sbjct: 407 AVVKANVLAQSGDCVLLS-PACASFDMYADFEARGQAFRQAVREIL 451


>gi|301169879|emb|CBW29483.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           10810]
          Length = 475

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 127/376 (33%), Gaps = 40/376 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA      +  A+ +   P++      +   + A  +  +H
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I  ++ L    +      S+          +  YL   
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D ++       A    
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +             Q  +                I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFI 334

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +   R+  DY H    +++ +K  R      RI+++F                  L  
Sbjct: 335 RPNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGEAP 410


>gi|325283995|ref|YP_004256536.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus proteolyticus
           MRP]
 gi|324315804|gb|ADY26919.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus proteolyticus
           MRP]
          Length = 484

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 127/415 (30%), Gaps = 46/415 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              +V S A            +  I V+      + L A  L        + V GT GK+
Sbjct: 80  VSVLVASEAVPKTHPEVCAALDAGISVLPR----MQLLAELLEAGPS---VGVIGTHGKT 132

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +S +      +GL          +  F  + R                + QG     V
Sbjct: 133 TTSSMIAVALAGAGLDPAAF-VGGIVPEFGANAR----------------AGQGPFVAEV 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL---FEELLPKESPA 244
           + S       R   +      FTN   DH+     Q  Y+         F + + +    
Sbjct: 176 DESDR-----RFAQLSCETAVFTNAEDDHVG--GNQATYWETVEEQHAGFAQFVSQAKRV 228

Query: 245 IIYADDA-YSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDF-D 301
           + YAD        ++         LS G  +G     + +         T++  G+    
Sbjct: 229 LYYADWQGLEGRSLEHLVAGCAEQLSYGVAEGCTYRAENLRPDPGGTSFTVTCRGEVLGQ 288

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG     NAL A  +    G D       L        R++ +G    G ++  D
Sbjct: 289 ARVSLPGHHNAMNALAALAVTHLYGGDFGRAALALAAFKGPGRRWQHIG-ELHGAQVVDD 347

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    L+         T  R+ VVF         +       AL  AD  +V D    
Sbjct: 348 YAHNPTKLQ-AAVQAAQQTGRRVRVVFQPHRYLRTQQSWPRLADALMSADEVMVLDIAAA 406

Query: 422 SEDP-EKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P E I +++I       G         R + +        + D++V  G G 
Sbjct: 407 GELPIEGIHSQLIVDRMSSSGHTSASYWPQRGDVVDYLRRTAGEGDIIVTMGAGD 461


>gi|269118800|ref|YP_003306977.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
 gi|268612678|gb|ACZ07046.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
          Length = 448

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 106/341 (31%), Gaps = 39/341 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++ +S +              G    I S ++                
Sbjct: 107 SKGIAVAGTHGKTTTSSMLGITMLEKDPCIVVGGIIPEIGSNSKVGNSEYFIAEADESDN 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S+L                        +       TN+  DH++ H + +    +     
Sbjct: 167 SFL-----------------------YLTPSYSIVTNVEADHLENHGSYENIKKSFEEFI 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +         ++  D    K++     N      S+  +   I+   +   + +    + 
Sbjct: 204 D---KTSDIVVLNKDCHEIKKL--NLKNKNIIWYSINDESADIYAANIEYKNRESHYEVV 258

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+    F   +PGE  + N+L    L      D   V E+L        R++ +    
Sbjct: 259 KNGESLGKFRLSIPGEHNISNSLGVIYLAHEFLCDMDKVKEYLYNFRGANRRYQIL--YD 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +  +I  DYAH    +   +   + I +G+I VVF                 +L LAD  
Sbjct: 317 KSIKIIDDYAHHPTEITATINAAKKIETGKITVVFQPHRYSRTNFFLNEFAESLKLADEV 376

Query: 414 IVTDDNPRSEDP-----EKIRAEIIHGIPGF---IEKGNRI 446
            +       E+       +  AE+I G        E  +R+
Sbjct: 377 YLLPIYSAEEENIYNISSEKLAELIGGNTRVYSEEEISDRV 417


>gi|167856479|ref|ZP_02479196.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
 gi|167852402|gb|EDS23699.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
          Length = 475

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 147/429 (34%), Gaps = 50/429 (11%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
              GA+  +   A +++  S       I  + P +      +        + A  +  +H
Sbjct: 60  AKAGAKVFIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPVIQRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  + +  I   +GL    +      S+          +  YL   
Sbjct: 120 G---IAIAGTHGKTTTTAMISMIYTEAGLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVR 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    A++ ADD     VM+ A   G +V+S G+ +     ++       +   T
Sbjct: 216 FLRNLPFYGLAVMCADDET---VMEIAPKVGRQVISYGFSEKADYRIEDYQQTGFQGHYT 272

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +    G+  + L  +PG     NA  A  +    GI +  +L  L        RF+ +G+
Sbjct: 273 VVCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGS 332

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +    +  DY H    +++ +K  R    + R+++VF                  L
Sbjct: 333 FIRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTRDLFDDFVQVL 392

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  I+ +     E P      + +   I + G    I   +  +      +++   D
Sbjct: 393 SQVDALIMLNVYAAGEAPIVGAESKDLCRSIRNLGKVDPILVSDTSQLGEVLDQIIQDGD 452

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 453 LILAQGAGN 461


>gi|156741081|ref|YP_001431210.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus castenholzii DSM
           13941]
 gi|189029028|sp|A7NI92|MURC_ROSCS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156232409|gb|ABU57192.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus castenholzii DSM
           13941]
          Length = 476

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 139/438 (31%), Gaps = 60/438 (13%)

Query: 56  GHL--FIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYG 111
           GH   F+  A       +V +SA   +        +   P+L   +              
Sbjct: 51  GHEPAFVGDADR-----LVATSAVQDEHIELVEARKRGIPVLRRADL---------WREW 96

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            H   ++AV GT GK++  + +  +  R+G++   +    T      + R   P+   + 
Sbjct: 97  SHGRQVVAVAGTHGKTTTTALIALMLTRAGIAPGFLIGGET-PDLGVNARWGNPAAPLVV 155

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y  +                      +       TN+  +H+D + +   Y  A  
Sbjct: 156 EADEYDRTFLA-------------------LTPDIAIITNVEWEHVDIYPSPDEYEAA-F 195

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHN-------------AGCRVLSVGYQGKFIH 278
           R F   +      I+  D+A ++ V+                  A CR+  + +    + 
Sbjct: 196 RTFARQVAHPQRLIVCGDNAGARRVVGHPDAQQYGIEEAIARNPASCRLALMDWMAANVR 255

Query: 279 LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                   +  +      G   +  +   L G+  V NAL A      +GID   +   L
Sbjct: 256 YDGSMTHFDLWRYDRRTCGTRLEGMYTMRLVGDHNVQNALAAIAAATTLGIDRTAIGAAL 315

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +      RF+  G    G  +  DYAH    +   L   R       IVV+       +
Sbjct: 316 AEYRGARRRFDIKG-EVNGITVIDDYAHHPTEVRATLAAARARFPQHRIVVYLQPHTFSR 374

Query: 397 GKRPIM-GKIALDLADIAIVTDDNPRSEDPE----KIRAEIIHGIPGFIEKGNRIEAIRT 451
               +     A D ADI  + D  P  E  E              P     G+   A  T
Sbjct: 375 TYAMLDNWTHAFDAADIVRIGDVYPARETGEPRAAARALAGRIAHPDVEVVGDVATATAT 434

Query: 452 AIEMLNKQDVLVVAGKGH 469
              +L   D+L+  G G 
Sbjct: 435 ITALLQPGDLLLTLGAGD 452


>gi|77361421|ref|YP_340996.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|122063255|sp|Q3IG02|MURD_PSEHT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76876332|emb|CAI87554.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 446

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 144/397 (36%), Gaps = 55/397 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S   SL   +     N  + V+ +   F  +        + + ++AVTG++GKS+V 
Sbjct: 75  IIISPGLSLTIPAIAKAINAGVEVIGDVELFARI--------NTKPVVAVTGSNGKSTVV 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +  QQ+   +G  +   G   T                 L    S LS+  V    +E S
Sbjct: 127 TLAQQVLLAAGYKAALGGNIGT---------------AVLDLLQSDLSNNDVDVYVLELS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD      ++ I+ +  N+  DH+D + + QAY ++K+ ++       +  I  ADD
Sbjct: 172 SFQLD--TTTSLQPISATVLNVSEDHLDRYASYQAYIDSKLSIY----NNAALVITNADD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG-- 308
                  +  H+     LS G       L +      +QQ       K F  +  L    
Sbjct: 226 -------EATHSKAKSQLSFGANQGDYSLGE-----YQQQTYFMQANKAFLPVTSLAVVG 273

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +    NAL    L     I  A       + + +  R +FV    R G  Y + +  +N 
Sbjct: 274 KHNYLNALAVMALLSPFNISKAQYSTAFSQFNGLAHRCQFVAE--RAGVKYFNDSKATNV 331

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              I       T+G+ ++V   G  +      +   +   +  +     D          
Sbjct: 332 GATIAAIDSLATNGQQLIVIAGGDAKGADLNALTPYLQQHVKALICFGKD---------- 381

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +++          N  EA+  A ++    +++++A
Sbjct: 382 AKDLMALTNKSHLTNNMSEAVTLAKQLSEPGNIVLLA 418


>gi|326561773|gb|EGE12108.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 7169]
          Length = 460

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 116/361 (32%), Gaps = 24/361 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++LAV GT GK++  + +  I Q SG+ +   IG    +++  +   L      YL K 
Sbjct: 103 RHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGKQ 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V       S+    + +    +       NL  DH D      A    +   
Sbjct: 163 F------FVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAI-QTQFHH 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++P +   II AD    +  + +       V+     G      K+ A ++     +
Sbjct: 216 MIRMIPSKGQIIIPADTPSLETTLDK--GVWTTVVRTSLNGDAEWQAKLDA-NDGSSFWV 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + + G   V NAL A      +G+   +    L     +  R E +G + 
Sbjct: 273 HHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG-DV 331

Query: 354 RGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
               ++ D+AH   ++   L    + +   RI  +          G        +  +AD
Sbjct: 332 DDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAAIAD 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             I         +P+ +   +   I         + I A I          D +++   G
Sbjct: 392 QVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIMSNG 444

Query: 469 H 469
            
Sbjct: 445 D 445


>gi|255034326|ref|YP_003084947.1| cyanophycin synthetase [Dyadobacter fermentans DSM 18053]
 gi|254947082|gb|ACT91782.1| cyanophycin synthetase [Dyadobacter fermentans DSM 18053]
          Length = 906

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 123/359 (34%), Gaps = 32/359 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               + ++ G+    +G T+T   +     +          A   L++  V    +E + 
Sbjct: 499 LTAHLMRQPGI---CVGFTTTDGIYVDGRLVEQGDCTGPESARKVLTNPSVDVAVLETAR 555

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   +   G  TN+  DH+  +   T +     K  +  E + ++  A++ A+
Sbjct: 556 GGILRAGLGFDQCDVGVITNIAADHLGLNGVQTLEDMARVKSVI-AESVSRDGYAVLNAE 614

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-------------TISVE 296
           + +   +  R     C++       +  H+           +              I +E
Sbjct: 615 NEHCVALAARLE---CKIAFFSINPENAHVLAHTCEGCLACIYRDGYITIIDASERIQIE 671

Query: 297 G-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNS 353
             +D          F + N L A       G   + + + L    V              
Sbjct: 672 HVRDIPATMGGKCPFMIENVLAAVLAAYCQGARLSQIRQGLRAFQVSDQSTPGRLNHFAF 731

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           R   + VDYAH  + L  + + ++TI +   + +    GDR       +G +A    D  
Sbjct: 732 RDFNVLVDYAHNPHGLHALGEYLKTIPASGKLGIITGVGDRRDEDIRELGNVAAGCFDQI 791

Query: 414 IV-TDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+  DD+ R    +++   +  GI             + + AIR A    +K  ++VV 
Sbjct: 792 IIRLDDDLRGRQQQQMIDLLKQGITAANPLCKVQVISDELRAIRHATGRASKGQLIVVL 850


>gi|315179012|gb|ADT85926.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii NCTC 11218]
          Length = 456

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 117/363 (32%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +   +LAV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 YDRWVLAVSGTHGKTTTSSMLAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    DA   +V++R           G QG++   K      +  Q  
Sbjct: 207 LV-RTVPGNGRILAPRQDAALADVLRR--GCWSETEFSGEQGEWQAEK---ICKDGSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L GE  V NAL+       +G+   L  E L        R E  GT
Sbjct: 261 VLHQGERVGTVTWDLVGEHNVNNALMTIAAARHVGVTPDLACEALGSFINTKRRLELKGT 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L+ +R     R I+            G        +L  
Sbjct: 321 E-NGVTVYDDFAHHPTAIELTLEGLRNKVGDRKIIAVLEPRSATMKLGVHKETLAASLAA 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNR-IEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     ++           +   E +    +     D ++V 
Sbjct: 380 ADSVYLFQ-------PSNIPWAVQDVADQCSQPAHVSDNMAEFVAQICQEAKPGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|297581386|ref|ZP_06943309.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534224|gb|EFH73062.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 451

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 115/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLFKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQADDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|153801140|ref|ZP_01955726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
 gi|124123373|gb|EAY42116.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
          Length = 451

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDTALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|238761557|ref|ZP_04622532.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
 gi|238700071|gb|EEP92813.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
          Length = 495

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 139/423 (32%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVS+A S  +          I V+    + L+      +G      +AV GT GK+
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVIRRA-EMLAELMRYRHG------IAVAGTHGKT 135

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  I   +GL    +      ++          S  YL   ++       + +  
Sbjct: 136 TTTAMVSSIYAEAGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-- 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +Q            F   LP    A++ 
Sbjct: 188 -------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMC 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFP 305
            DD   +E++ R       + + G+     + +        +   T+  ++         
Sbjct: 235 IDDPVVRELLPRVGR---HITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLN 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--R 357
            PG     NA  A  +    GI+   +L  L        RF+F+G       N + G   
Sbjct: 292 APGRHNALNAAAAVAVATEEGIEDDDILRALIGFQGTGRRFDFLGNFPLAPVNGKEGSAM 351

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DY H    ++  +K  R      RI++VF                  L   D+ ++ 
Sbjct: 352 LVDDYGHHPTEVDATVKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQVDVLLML 411

Query: 417 DDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D     E P            IR     G    I   +         ++LN  D+++V G
Sbjct: 412 DVYAAGESPIPGADSRSLCRTIRN---RGKLDPILVSDSDTVPEVLAQVLNGDDLILVQG 468

Query: 467 KGH 469
            G+
Sbjct: 469 AGN 471


>gi|27364161|ref|NP_759689.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus CMCP6]
 gi|27360279|gb|AAO09216.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus CMCP6]
          Length = 484

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 119/363 (32%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 132 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 182

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 183 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 237

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V+ R   +        + G+    + V    +     
Sbjct: 238 LV-RTVPGNGRILAPKQDGALADVLSRGCWSDQE-----FSGQDGEWQAVKLSKDGSHFE 291

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L +      R E  G 
Sbjct: 292 VWLQGEQVGTVQWDLVGDHNVDNALMAIAAARHVGVTPDLACEALGRFINTRRRLELKG- 350

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V         +G        +L  
Sbjct: 351 EINGVAVYDDFAHHPTAIELTLAGLRNKVGDKKIIAVLEPRSATMKRGVHKETLAASLKQ 410

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVA 465
           AD   +         PE I     ++           + I+    +I         ++V 
Sbjct: 411 ADEVFLYQ-------PESIAWSVQDVAAQCQQPAFTSDNIDQFVASIAQRAEAGTQILVM 463

Query: 466 GKG 468
             G
Sbjct: 464 SNG 466


>gi|260853304|ref|YP_003227195.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257751953|dbj|BAI23455.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|323157842|gb|EFZ43945.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EPECa14]
          Length = 491

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 137/410 (33%), Gaps = 55/410 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +  A   +  P++     R+   + A  +  +H    +A+ GT GK++  + V  I   
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIYAE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +GL    +      ++                  ++       + +              
Sbjct: 144 AGLDPTFVNGGLVKAAGVHARLGHG------RYLIAEADESDASFL-------------- 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E++ R
Sbjct: 184 -HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPR 242

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALV 317
                 +  + G+ +   + ++    I  +   T+  + K+        PG     NA  
Sbjct: 243 VGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAA 299

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IYVDYAHTSNSL 369
           A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    +
Sbjct: 300 AVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEV 359

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +  +K  R       ++++F                  L   D  ++ +  P  E P  I
Sbjct: 360 DATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAP--I 417

Query: 429 RAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
                  +   I    +I+ I         EML       D+++V G G+
Sbjct: 418 PGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|33865066|ref|NP_896625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 8102]
 gi|60390530|sp|Q7U8T1|MURD_SYNPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33638750|emb|CAE07045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8102]
          Length = 462

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 129/389 (33%), Gaps = 53/389 (13%)

Query: 82  FSATIRSNTPILVVDNTRK----FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            S  +  + P L  D+ R+         A           + +TGT+GK++V   +  + 
Sbjct: 75  ISPGVPWDHPTL--DDLRQRGVAVDGEMAVAWDALKHIPWVGITGTNGKTTVTHLLSHVL 132

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            ++GL++   G                 S   +A  L    +     + +E SS+ ++  
Sbjct: 133 CQAGLAAPMGGNMGV-------------SAAEMALNLQQEHTTAPDWLVMELSSYQIEAA 179

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               I+   G +T L  DH++ H T +AY   K      LL +   AI  ADD   ++  
Sbjct: 180 --KRIRPRIGIWTTLTPDHLERHGTVEAYRAIK----RGLLERSDHAIFNADDPDLRQQR 233

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------FPLPGE 309
           +               G ++  +      +   + I+ +G   D            +PG 
Sbjct: 234 QSWTG-----------GTWVSAESAQPDGHPADLWINGKGWVCDRSQPLFPAEALAMPGA 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L+       IG+  A ++  L     VP R E VG            A   ++ 
Sbjct: 283 HNRQNLLLVTAAARQIGLSPASIVAGLRSFPGVPHRLEPVGRIGNAQVFNDSKATNYDAA 342

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            + LK ++       +VV   G  +       + ++      + +       +E+   + 
Sbjct: 343 AVGLKAMQ-----GPVVVLAGGSTKQGDATGWLEELNRKACAVVLFGA---GTEELHGLI 394

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
               +       + +   A+  A+     
Sbjct: 395 TG-ANFTGELTRRTDLTSAVEEAVRSAEA 422


>gi|309388994|gb|ADO76874.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium praevalens DSM
           2228]
          Length = 455

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 146/418 (34%), Gaps = 54/418 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV +SA    +          I +V        + A  +  K     +AV GT GK
Sbjct: 64  GADLIVKTSAIPTNNPELKAARKKGIKIVKRAE----MLAYLMKDK---KTIAVAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V + +  I + +      +     +  + ++ +                  +G   ++
Sbjct: 117 TTVTAMLAAIFKEAKKDPAVM-----VGGYLKELKGNIADG------------EGEYFIT 159

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S G   +     +       NL  DH D+++    + N     F     KE+  + 
Sbjct: 160 EADESDGSFLY----FEPDILLLNNLELDHPDFYKNLAEFMN-IFERFANKNDKEAFLLY 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFP 305
             DD     +      +  +  S          K +   + +    +   +         
Sbjct: 215 NKDDQNLNNLFA----SRKKSSSFSLNQANFSAKNIQYNNFESSFELYYLDQFVIKIELS 270

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GRIYVDYAH 364
           +PGE+ +YNAL AA + + + ID   +   L+K   V  RF+F G    G   +  DYAH
Sbjct: 271 VPGEYNLYNALAAAAVSLKLNIDLTALKSALKKFSGVGRRFDFKGKLLEGKVDLVDDYAH 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
               ++ +LK ++ +    I VVF         +       +   A+   +TD    SE 
Sbjct: 331 HPTEVKELLKTVKNMNYSNIRVVFQPHRYSRTKRFLNDFSYSFLNANQVYLTDIFSASEQ 390

Query: 424 DPEKI-----RAEI-------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +  KI      AEI        H    F E  N        ++ +   D+++  G G+
Sbjct: 391 NKYKISLNDFAAEISKNSQVDCHYYSDFNEIKN------KLLKEVKPGDIILTVGAGN 442


>gi|254291457|ref|ZP_04962249.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
 gi|150422647|gb|EDN14602.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
          Length = 451

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDTALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|330685887|gb|EGG97516.1| Mur ligase middle domain protein [Staphylococcus epidermidis
           VCU121]
          Length = 686

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 119/356 (33%), Gaps = 32/356 (8%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           + +   +    P L+V ++ K     A  +  ++   ++A+TG+ GKSS       + + 
Sbjct: 81  ETYVEGLEYKIPQLIVQDSIKAFKTLAIYIRNQYKNPVIAITGSMGKSSTRMLTASLLKD 140

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                   G  +  ++   +      +P +            V   S+ A +H  +    
Sbjct: 141 Y-PIQENRGNNNIRAAIYANMLKLIKNPYF-----------AVIETSLNAINHRENTSL- 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K      T +G  H     + +     K R+F  L  +   AII  D  ++  ++ +
Sbjct: 188 -YLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGL-SENGVAIINGDTMFADYLIDQ 245

Query: 260 AHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           AH     V +              ++  +    ++ I V G+  ++      +  + N L
Sbjct: 246 AHQYTQNVQTYSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNYQINTFSDGMISNTL 305

Query: 317 VAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS------NSL 369
            A  +   + I   A  L + E    +    E      +     +D  H +      N++
Sbjct: 306 AAILILKNLNIPVKAEYLYNFEPFSKILKMKEIQTPTHK--TTLIDDTHNASLPAMINAI 363

Query: 370 EMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +           G  I+        G       + ++  ++   AD  +  DD+ R
Sbjct: 364 KA-FDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNADYILCLDDDLR 418


>gi|295425329|ref|ZP_06818032.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylolyticus
           DSM 11664]
 gi|295065105|gb|EFG56010.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylolyticus
           DSM 11664]
          Length = 437

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 108/358 (30%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+GT GK+S  S +  +      +S+ IG          D+R                
Sbjct: 110 IGVSGTHGKTSTTSLLSHVLGEVAPTSYLIGDGR--GKGVADSRFFVYEAD--------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 159 ----------EYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G+          V       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTSIPKYTYGFSDSDDFQAVNVEKSTTGSKFNVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+D   F   L G+  + N+     +     +    + + L        RF     +   
Sbjct: 255 GEDLGQFEIHLFGDHSILNSTAVIAVAYTEKVPMEDIKKGLLTFKGAKRRFS--EKDFND 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPEKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      + I  +       N   V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTK-----NNNSVIVFMGAGD 425


>gi|78187954|ref|YP_375997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium luteolum
           DSM 273]
 gi|122063253|sp|Q3B127|MURD_PELLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78167856|gb|ABB24954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           luteolum DSM 273]
          Length = 460

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 129/398 (32%), Gaps = 45/398 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVAS 131
                  S  +    P++     R+         AS         I  +TGT GK++ A+
Sbjct: 68  DADFAVVSPGVPPGVPVIRELERRQIPVHSEIELASWFCR---ARIAGITGTDGKTTTAT 124

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            VQ++ +  G           +  +          P   +  +  +  + +    VE SS
Sbjct: 125 LVQRMAEAVGR----------LGGYRAYGVGNIGVPF--SSKVEEMEERDIAV--VELSS 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADD 250
           + L+  R    +  A   TN+  DH+D +      Y +AK R+    L      +  ADD
Sbjct: 171 YQLE--RCSSFRPEAALITNITPDHLDRYGGDIMRYADAKYRI-AMNLGSSGTLVYNADD 227

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG-- 308
                +  R    G +  +V +           +    +   +    +            
Sbjct: 228 P---ILRARFSVGGLQFSTVPFSTAGPVGGDPSSGIYLEDGWVHAGLRRLIHTSEFQKGS 284

Query: 309 ---EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
                   N L A GL  A+ +D   VL+ L +   V  R EFV +      I    A  
Sbjct: 285 FRGNHNNSNVLGAIGLARALRLDEKAVLQALREFPGVEHRQEFVASKRGSDWINDSKATN 344

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            N++   L+ +        IV+   G D+      +   +  + AD+ +        E  
Sbjct: 345 VNAMRQALEAVP-----GRIVLIAGGRDKGNDYSAV-ATLVREKADLVVAM-----GESR 393

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +K+       +   +E     +A+R A         ++
Sbjct: 394 QKVADAFRADV-AVVEAATLEDAVRLAAGGAGTGRTVL 430


>gi|217964242|ref|YP_002349920.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290893199|ref|ZP_06556186.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|254766008|sp|B8DHD7|MURC_LISMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217333512|gb|ACK39306.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290557181|gb|EFD90708.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|307571190|emb|CAR84369.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes L99]
          Length = 447

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 147/419 (35%), Gaps = 60/419 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG  +   +                        +G  + ++EA  +   +H L
Sbjct: 126 IRPTSYLIGDGTGSGT------------------------KGAEYFALEACEYQ--RHFL 159

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 160 AY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--AELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
           + +        G + +F   K V       +  +   G+    F  P  G+  V NAL  
Sbjct: 213 SLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V + L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVEDVKKELKTFEGVKRRFSI--TEKANQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             G   I++ +  E ++        + V++  G G   V       +K+ +D +++ E 
Sbjct: 390 TKGNHIIKEEHTEELLKY------PEAVILFMGAG--DVQKFQAAYEKV-LDHEVLTEA 439


>gi|328471888|gb|EGF42765.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 10329]
          Length = 452

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 124/360 (34%), Gaps = 29/360 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++     GC      + G+    +    + +  +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQALADVLE----CGCWTERQ-FSGEDGDWQAHKLVLDGSKFE 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++++G+      + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VALQGEKVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
             +G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 E-QGITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      + I  +     P F++   +   A    +E     D ++V   G
Sbjct: 380 ADEVFLFQPDNIEWSVQDIAEQCKQ--PAFVDADIDNFVA--KIVERAQPGDQILVMSNG 435


>gi|294677022|ref|YP_003577637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
 gi|294475842|gb|ADE85230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
          Length = 466

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 117/354 (33%), Gaps = 44/354 (12%)

Query: 67  GAEAIVVSSAYSL------QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENIL 118
           G  A++ S              +A + +  P  V ++   F   +A+  +         +
Sbjct: 66  GIAALITSPGIPHLYPRPNPVIAAAMAAGVP--VDNDIGLFFRSWATAGWDDFDVTPRTV 123

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GKS+  + +  I + +G ++   G                         L    
Sbjct: 124 CITGSNGKSTTTALIHHILKHAGRATQMAGNIG-------------------RGVLDLDP 164

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +    V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  
Sbjct: 165 PEDGEVVVLELSSYQTDLAR--ALTPDIAVFTNLSPDHMDRHSGMGGYFAAKRRLFAEGA 222

Query: 239 PKESPAIIYADDAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-- 294
           P  +   +  D+     +  +        RV+ V    K                     
Sbjct: 223 PDRAVIGV--DEPEGVYLANQMAMGATDDRVIRVSSAKKLGDFGWSVFARKGFLAEWRKG 280

Query: 295 --VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             V   D   +  LPG     NA  A   C ++G+   L+ E       +P R + +   
Sbjct: 281 RQVASIDLRGVKALPGAHNHQNACAAYAACRSLGLAPKLIEEAFHSFGGLPHRSQTIAEK 340

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKI 405
                +    A   +S    L+    I      +V G G +      +P++G +
Sbjct: 341 RGVRYVNDSKATNVDSAAKALEAFSNIR----WIVGGMGKEGGVSALKPLLGSV 390


>gi|157377044|ref|YP_001475644.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
 gi|157319418|gb|ABV38516.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
          Length = 487

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 115/369 (31%), Gaps = 33/369 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +     +      +     SP ++ +
Sbjct: 124 PNRWVLAVSGTHGKTSTSSMLAWILEECGYEPGFL--IGGVPQNFGVSARLGNSPFFVVE 181

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                       +       NL  DH D     +A    +  
Sbjct: 182 ADEYDSAFFDKRSKFVHY------------QPRTLVINNLEFDHADIFDDLKAIQR-QFN 228

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------VGYQGKFIHLKKVC 283
                +P +   I   D    ++V++    +     +         +  Q          
Sbjct: 229 HVIRTVPGQGKIIWPKDSEAVQQVIEMGCWSEQETYTKSQSRGPKAIEQQAPAQGWSTQL 288

Query: 284 AIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              +  +  +   G     L + L G+  V NA +A    + +G+   + +E L K    
Sbjct: 289 IADDGHKFELFFNGDSQGILDWSLIGQHNVENATMAIAAALHVGVQPEVAIEALTKFSPP 348

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRP 400
             R E +GT   G  +Y D+AH   ++   L+  R       I +           G   
Sbjct: 349 KRRMELIGT-VNGIEVYDDFAHHPTAIATTLQGTRAKVGEGKITIILEPRSNTMKSGVHK 407

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                ++ LAD A +   DN        ++A +              E I          
Sbjct: 408 DTLADSMKLADEAYLYQADNIGW----DVKAAMEKAELPVTVLYQIDEIIDAVASKAKSG 463

Query: 460 DVLVVAGKG 468
           D ++V   G
Sbjct: 464 DTIIVMSNG 472


>gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
 gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
          Length = 808

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 121/399 (30%), Gaps = 55/399 (13%)

Query: 41  QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNT 98
             G +     G+ ED    IP+        ++ SS  S  +       +   P+L     
Sbjct: 47  TKGAL--CFYGHHED---HIPEH-----ATVIYSSGISEDNVEFCKAKQRGLPLLHRSQC 96

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              L               + ++G+ GK++  S +  I Q +        P+  +     
Sbjct: 97  LAMLME---------ESTKILISGSHGKTTTTSLIIAIFQEAKND-----PSYAVGGLNS 142

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           ++         +  A +  S   + H                         TNL  +H+ 
Sbjct: 143 ESLNGHAGSSSIFIAEADESDGSLKHY-----------------APDVAVVTNLDEEHLV 185

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI- 277
            +          M+ F   +          D    K             ++ G+      
Sbjct: 186 NYDDDPEKLLKAMQEFSNKVRDSQKVFYNGDCPQLK--------GEISGITYGFSPSCQL 237

Query: 278 HLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            +        +   +    G ++      LPG   V NA  A G+ +  GI+ +++ + L
Sbjct: 238 QVVSFYQREWQSSFSFIFCGIEYQNIELNLPGRHNVLNAAAACGVALTFGIEISVIRKAL 297

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRD 395
           +K   V  R E    +++      DYAH    +   L+ +R      R+I +F       
Sbjct: 298 KKFPGVQRRLEQKNCSNK-YLYLEDYAHHPVEISHTLQAVRDAVGLRRVIAIFQPHRFSR 356

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                 +   A   AD  I+TD     E   +I  E + 
Sbjct: 357 LQACLDLFPHAFKDADEVILTDVYSAGEPFVEISMEQLS 395


>gi|224419171|ref|ZP_03657177.1| D-alanyl-D-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313142677|ref|ZP_07804870.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313131708|gb|EFR49325.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
          Length = 485

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 135/357 (37%), Gaps = 42/357 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+AVTG+ GK+S+ +F+ Q+ Q            +T++    D      S   +  
Sbjct: 160 PNLTIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDI-- 217

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              Y+   G       A   G  +  ++ IK        +G  HI+Y ++    + AK  
Sbjct: 218 ---YIVEAG-------ARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYE 267

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + +   P       Y D+   +            V SV                N    +
Sbjct: 268 ILQS--PNLQKVYNYKDNTPPQNFYGNMIWFPQNVSSVDTS------------LNGTSFS 313

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++  G+  DF   + G F V N   A  +    GI S  +++ + ++  V  R   +  N
Sbjct: 314 LTYNGEKMDFETKILGAFNVANISAAIQVAKDFGISSERIIKQVCRMEGVSHRLSKIMVN 373

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +   + +D ++  N L+ +L+ IR  ++  GR ++V     +  +     + +    + 
Sbjct: 374 DK---VILDDSYNGN-LDGMLEAIRLSSLYDGRKVIVTPGLVESSKEANIALAEAIDRVF 429

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--EAIRTAIEMLNKQDVLVVA 465
           DIAI+T      E   K+  E IH  P  I   ++   E I  +  M    D+++ A
Sbjct: 430 DIAIIT-----GELNSKLLKEHIH-KPQKIILKDKKNMENILKSATMA--GDLILFA 478


>gi|282859037|ref|ZP_06268173.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bivia
           JCVIHMP010]
 gi|282588205|gb|EFB93374.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bivia
           JCVIHMP010]
          Length = 459

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 45/376 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ +S    I  +S +          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSSMCAHIMHQSSVDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSDKSDYVVIEADEFDRSFHWL---RPWMTVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II+ D      V +     G  +     +    H + +               
Sbjct: 214 IQPGGALIIHKDLEVQPNVQE-----GVTIYEYSREEGDFHAENIRIKEGTIVFDFISPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   +     P    + N + A  +    G+ +  + E +     V  RF+F   NS+  
Sbjct: 269 ETIKNVELGQPIPINIENGISAMAMAQLNGVSANEIREGMRTYGGVDRRFDFKVMNSKH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +    K+++ + + R + V+F                 AL   D  I+
Sbjct: 328 VVLSDYAHHPKEILQSAKSLKELYADRKVTVIFQPHLYTRTRDFYKEFADALSFFDEVIL 387

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           T+  P  E+P        I   +  GI   +   +  E +          DVLV+ G G+
Sbjct: 388 TEIYPAREEPIEGVTSALIFDNLKAGIEKQLIVKD--EVLNFV--KSRDFDVLVILGAGN 443

Query: 470 -ETV-----HIVTNGE 479
            +        ++ + E
Sbjct: 444 LDNYVPQIAQLIEDKE 459


>gi|326577894|gb|EGE27758.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis O35E]
          Length = 460

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 116/361 (32%), Gaps = 24/361 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++LAV GT GK++  + +  I Q SG+ +   IG    +++  +   L      YL K 
Sbjct: 103 RHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGKQ 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V       S+    + +    +       NL  DH D      A    +   
Sbjct: 163 F------FVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAI-QTQFHH 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++P +   II AD    +  + +       V+     G      K+ A ++     +
Sbjct: 216 MIRMIPSKGQIIIPADTPSLETTLDK--GVWTTVVRTSLNGDAEWQAKLDA-NDGSSFWV 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + + G   V NAL A      +G+   +    L     +  R E +G + 
Sbjct: 273 HHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG-DV 331

Query: 354 RGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
               ++ D+AH   ++   L    + +   RI  +          G        +  +AD
Sbjct: 332 DDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAAIAD 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             I         +P+ +   +   I         + I A I          D +++   G
Sbjct: 392 QVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIMSNG 444

Query: 469 H 469
            
Sbjct: 445 D 445


>gi|149275985|ref|ZP_01882130.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter sp. BAL39]
 gi|149233413|gb|EDM38787.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter sp. BAL39]
          Length = 451

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 118/361 (32%), Gaps = 43/361 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  +AV GT GK++ +S +  +   +G      G T+ +   A +               
Sbjct: 113 QFCIAVAGTHGKTTTSSIIAHVLTDTGF-----GCTAFLGGIASNYNSNF---------- 157

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +  V  V  +             +       T++  DH+D +        +   LF
Sbjct: 158 -LLGNNDVVVVEADEYDRSFLT-----LHPDIAVVTSMDADHLDIYGDASQLVES-FGLF 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L KE    +            +A     + +S         L          +    
Sbjct: 211 AGQLKKEGTLYV------------KAGLPLQQGISYS-AVDEGRLMGTNIRVEGARFVFD 257

Query: 295 VEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               DF   D    +PG   V NA+ A  + + +GI+  LV + +     V  RFE++  
Sbjct: 258 YVDGDFSIADLQLMVPGRHNVENAVAAIAVALRLGIEPELVKKAIGNFKGVKRRFEYI-V 316

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N+       DYAH    L+     IR      ++  VF                  L   
Sbjct: 317 NTSEYVYIDDYAHHPEELKACFGAIRQLYPEKKLTAVFQPHLFTRTRDFADDFAKVLGTV 376

Query: 411 DIAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D  ++ D  P  E P E I AE ++  I    ++    + +   I M   + +L+  G G
Sbjct: 377 DDLLLLDIYPARELPLEGIDAEYLLEKITLDRKEVCAKDEVLEKIRMRKPE-LLLTVGAG 435

Query: 469 H 469
            
Sbjct: 436 D 436


>gi|160933177|ref|ZP_02080566.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
 gi|156868251|gb|EDO61623.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
          Length = 492

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 119/359 (33%), Gaps = 50/359 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I AVTG+ GK++  + + ++ + +G +    G                     L   
Sbjct: 145 PCRIYAVTGSDGKTTTTTIISEMLKAAGKTVHLGGNIG----------------CPLLPK 188

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +    V    VE SS  L   R           TNL  +H+D H+  Q Y +AK  +
Sbjct: 189 VEEIRKDDVAV--VELSSFQLISMRKS---PDVAVVTNLAPNHLDIHKDMQEYIDAKKNI 243

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                     A++  D+  ++ +                  + + L      H +  V  
Sbjct: 244 ILHQ-NAFGRAVLNLDNEITRGLAPLVRGELSYFTRQHTTDRGVCLNGGAICHRRNGVVS 302

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG   V N + A        +    + +  E    V  R EFV   +
Sbjct: 303 RIMDVK---DIRIPGNHNVENYMAAIAAVWGE-VSPEQMRQVAESFPGVEHRAEFV--RN 356

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             G  Y + +  S+    I   +   +     ++   GG   +     MG +  +   + 
Sbjct: 357 VDGADYYNDSIASSPTRTISGTLSLYSQK---IILIAGGYDKKIPYDAMGPVVNEKVKLL 413

Query: 414 IV---TDDNPRSE-------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           I+   T D  +S        DP+ IR          I   N  EA+ TA  +  K DV+
Sbjct: 414 ILMGNTADKIQSAVTKAENYDPQAIR---------IIRVENMEEAVETAHRLAQKGDVV 463


>gi|325286926|ref|YP_004262716.1| UDP-N-acetylmuramate--L-alanine ligase [Cellulophaga lytica DSM
           7489]
 gi|324322380|gb|ADY29845.1| UDP-N-acetylmuramate--L-alanine ligase [Cellulophaga lytica DSM
           7489]
          Length = 448

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 113/370 (30%), Gaps = 53/370 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V GT GK++ +S +  +   +G           I++F         S   L       
Sbjct: 115 FGVAGTHGKTTTSSILAHLLHETGTP---------ITAFLGGISEDFNSNFLL------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  +  VEA     D+  L  +       T++  DH+D + T     +A        
Sbjct: 159 --EGTDYSVVEADEF--DRSFLQ-LSPNVACITSMDADHLDIYGTGDDLKDAF------- 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   +   K  ++           +     F  +  V   +     +I    
Sbjct: 207 -----VAYVNRLEPNGKLFVRNGLPLSGITYGIEDDSDFC-ITDVEIKNGSYIFSIKTPN 260

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              +   F  PG   + N LVA  + +  G    +V   L     V  RF +        
Sbjct: 261 AVVNGVKFNKPGRHNLLNGLVAFAMALEAGKSPEIVAAALGTFKGVQRRFSY-RIKEEDF 319

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DYAH    +  + + +  +   +  V VF                ++L      I+
Sbjct: 320 VFIDDYAHHPTEINAVYEAVSEMHPNKKTVAVFQPHLYSRTKDFIDDFAVSLSQFQSVIL 379

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGK 467
            D  P  E+P      E +  +I +       K       +  I  L KQ  +VLV  G 
Sbjct: 380 LDIYPAREEPVEGVTSEWLLGKIKNPNKKICSK-------KELISELKKQNPEVLVAMGA 432

Query: 468 GHETVHIVTN 477
           G      +  
Sbjct: 433 GD-IGQEIDK 441


>gi|20141408|sp|P56947|CPHA_SYNY8 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|13516214|gb|AAF43647.2|AF220099_2 cyanophycin synthetase [Geminocystis herdmanii PCC 6308]
          Length = 874

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 146/389 (37%), Gaps = 31/389 (7%)

Query: 101 FLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              +        HP  I  LAVTGT+GK++    +  I +++G     +G TST   +  
Sbjct: 472 AAPVIDMLFPDNHPSRIPILAVTGTNGKTTTTRLLAHIYRQTGKV---VGYTSTDGIYLG 528

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D  +          A   L    V    +E +  G+ +  L       G   N+  DH+ 
Sbjct: 529 DYMVEKGDNTGPVSAGVILRDPTVEVAVLECARGGILRSGLAFESCDVGVVLNVAEDHLG 588

Query: 219 YHQTQQAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMK----------RAHNAGCRV 267
                     AK++ +  E +  +  A++ ADD    ++ K           + +    +
Sbjct: 589 LGDIDTIEQMAKVKGVIAESVNADGYAVLNADDPLVAQMAKNVKGKIAYFSMSKDNPIII 648

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             +   G     +       + + T+ +E  ++          F + NAL A+      G
Sbjct: 649 DHLRRNGMAAVYENGYLSIFEGEWTLRIEKAENIPVTMKAMAPFMIANALAASLAAFVHG 708

Query: 327 IDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           ID  L+ + +   +      PGR        +   + +DYAH       +   ++    G
Sbjct: 709 IDIELIRQGVRSFNPGANQTPGRMNLFDM--KDFSVLIDYAHNPAGYLAVGSFVKNW-KG 765

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGI----- 436
             + V G  GDR      ++GKIA  + D  I+  DD+ R  D   +   I  GI     
Sbjct: 766 DRLGVIGGPGDRRDEDLMLLGKIASQIFDHIIIKEDDDNRGRDRGTVADLIAKGIVAENP 825

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  +  EAI T ++ ++K  ++V+
Sbjct: 826 NASYDDILDETEAIETGLKKVDKGGLVVI 854


>gi|239826521|ref|YP_002949145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. WCH70]
 gi|259509789|sp|C5D8M2|MURD_GEOSW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|239806814|gb|ACS23879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           WCH70]
          Length = 451

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 126/350 (36%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + + ++ +         G    I + A +      +  +L   L
Sbjct: 112 APFIGITGSNGKTTTTTLIYEMLREGEKRPLLAG---NIGTAACEVAKKAEASNWLVTEL 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 +   +       N+   H+DYH T++AY  AK  +F
Sbjct: 169 SSFQLAG-----------------IRDFRPRISVLLNIFDAHLDYHGTKEAYAQAKANIF 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++  A+I ADD    ++ +  H       +    G+  ++       N + V   
Sbjct: 212 KNQTNED-YAVINADDELVMQLAENIHAQKVAFSATKVLGRGAYINNGFIYWNDEAVIAV 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         LPG+  + N L A  +    G+D+  + + L     V  R ++V T   
Sbjct: 271 AD-------IVLPGKHNLENILAAVAVAKLAGVDNKSIYQVLTTFTGVKHRLQYVAT-ID 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + + D   T+  +    K +       +I+    G DR      ++  +    A + +
Sbjct: 323 GRKFFNDSKATN--ILATQKALSAFEKDSVIL-LAGGLDRGNEFDALLPYLHNVKA-VVL 378

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+     K       GI       N  +A+  A ++    DV+++
Sbjct: 379 FGQTAPKIARVAK-----QAGIETIEYVDNVEKAVPVAYQLSEPGDVILL 423


>gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
 gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
          Length = 130

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E    +    +   ER     VS+DSR    G +FVA+ G + D H F+    A+GA 
Sbjct: 6   LREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +VS         +    N P L V +TR  L   A     +    ++AVTG++GK++V
Sbjct: 66  AAIVSR--------SPAEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117

Query: 130 A 130
            
Sbjct: 118 K 118


>gi|223985747|ref|ZP_03635791.1| hypothetical protein HOLDEFILI_03097 [Holdemania filiformis DSM
           12042]
 gi|223962257|gb|EEF66725.1| hypothetical protein HOLDEFILI_03097 [Holdemania filiformis DSM
           12042]
          Length = 435

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 104/365 (28%), Gaps = 44/365 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++ +A+           + P +      ++L               L V G+ GK++  
Sbjct: 62  VIIGNAFKEDFPEVAAARSNPKVTCYRYHEYLGALMKDY------TSLCVAGSHGKTTTT 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +   IG           +    P   YL               + E  
Sbjct: 116 GMLAAMMDEIAPTGHLIG---------DGSGEIHPDSQYL------------AVEACEYR 154

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H L  H            TN   DH+DY +T+  Y  A      ++   +   +++ DD
Sbjct: 155 RHFLAYH------PDYAVITNADLDHVDYFKTEADYAKAYEEFASQV---KKGLVLFGDD 205

Query: 251 AYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPG 308
              + +     +        G   G       +          +  +GK    F  P  G
Sbjct: 206 PKVRALRI---DPKVTHYYYGVDDGNDFQAVNIVETSEDMHFDVLFQGKPQGHFDLPFVG 262

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              ++N+L    L +  G  +  +   L        RF              DYAH    
Sbjct: 263 RHLLWNSLGVIALGLLEGYTAEQIEPGLASFKGTKRRFTIEKHGEN--VFVDDYAHHPTE 320

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           + + +   R      ++I +F                 AL  AD   + D     +  + 
Sbjct: 321 VSITIDAARKRFPGKKLIAIFKPHRVSRVFHFADDFAAALKKADEVYLCDFTSIDDKEDG 380

Query: 428 IRAEI 432
           I  +I
Sbjct: 381 IDIDI 385


>gi|219870392|ref|YP_002474767.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
 gi|254766005|sp|B8F3B7|MURC_HAEPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219690596|gb|ACL31819.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
          Length = 475

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 147/429 (34%), Gaps = 50/429 (11%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
              GA+  +   A +++  S       I  + P +      +        + A  +  +H
Sbjct: 60  AKAGAKVFIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPVIQRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  + +  I   +GL    +      S+          +  YL   
Sbjct: 120 G---IAIAGTHGKTTTTAMISMIYTEAGLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVR 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    A++ ADD     VM+ A   G +V+S G+ +     ++       +   T
Sbjct: 216 FLRNLPFYGLAVMCADDET---VMEIAPKVGRQVISYGFSEKADYRIEDYQQTGFQGHYT 272

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +    G+  + L  +PG     NA  A  +    GI +  +L  L        RF+ +G+
Sbjct: 273 VVCPTGERIEILLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGS 332

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +    +  DY H    +++ +K  R    + R+++VF                  L
Sbjct: 333 FIRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTRDLFDDFVQVL 392

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  I+ +     E P      + +   I + G    I   +  +      +++   D
Sbjct: 393 SQVDALIMLNVYAAGEAPIVGAESKDLCRSIRNLGKVDPILVSDTSQLGEVLDQIIQDGD 452

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 453 LILAQGAGN 461


>gi|169827838|ref|YP_001697996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992326|gb|ACA39866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 365

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 118/357 (33%), Gaps = 23/357 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++GK++  +FV  I  +           +T     +       S        +
Sbjct: 8   PIIAITGSAGKTTTKAFVGSILSKKWNVFESKDYWNTTEHTKKHKEEINDSHQ------A 61

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLF 234
            +   G+ +        G+  +    I+      TN+G  H+       +    AK  L 
Sbjct: 62  VVLEYGMAYP-------GIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELI 114

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
              + ++   I+  DD  S+ +         ++L+VG +         +          +
Sbjct: 115 HG-MDQQGLLILNKDDDNSRYL--ETQQFKGKMLTVGIKSDADYRAYDLQYKDIGMSFKM 171

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + G++ +   P+ GE  VYNAL A  +   +G     +   L      P R        
Sbjct: 172 KLHGQEIELYIPILGEHHVYNALNAVAVADYLGFSPLDIQAGL-NFKKPPRRLTIYNLRD 230

Query: 354 RGGRIYVDYAH-TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               +  D  H     +   +  +  I   R + + G   +    +     K+   +  +
Sbjct: 231 D-ITVIDDTVHSHPQGVRAAIDVLTNIAKKRKVAIIGQMRELGVLREEEYRKVGEYIYKV 289

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEML-NKQDVLVVAGK 467
            I           E   A I  G+ P  +      +A+   ++ L    D ++V G 
Sbjct: 290 GIDEFITYGFRTDEMSNAAIEMGMDPSKVHHFINKDALHALLDKLIQPHDTILVKGA 346


>gi|262401830|ref|ZP_06078395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
 gi|262351802|gb|EEZ00933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
          Length = 451

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 113/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S V  +    G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLDHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V KR           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVFKR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLFKGERVGQVNWSLVGDHNVSNALMAIAAVRHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLRS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAKAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|310642989|ref|YP_003947747.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Paenibacillus
           polymyxa SC2]
 gi|309247939|gb|ADO57506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa SC2]
          Length = 473

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 137/415 (33%), Gaps = 57/415 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V +                 I VV        L            I+ +TG++GK
Sbjct: 72  GVKLVVKNPGIPYTAPPVQKAVELGIEVVTEVEVAYHL--------CKAPIIGITGSNGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  ++V ++ + SG++    G   T                     L   +    +   
Sbjct: 124 TTTTTWVGKLLEASGMNPIVAGNIGT--------------------PLCEAAVDAKSDEW 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +               K       N+   H+DYH   + Y  +K RLF         A++
Sbjct: 164 MVVELSSFQLKGTKDFKPAVACLLNVAETHLDYHGGMEDYVASKARLFANQT-ASDTAVV 222

Query: 247 YADDAYSKEVMKRAHN-----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             DD+  +E++          +    L  G      ++  V     +  V     G    
Sbjct: 223 NWDDSVCRELVPYIQAKLLPFSMTERLQEGLFADPPYIPDVTDDIERNIVYRDGNGVLHP 282

Query: 302 FL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +      LPG F V NAL A  + IA G + A + E L     V  R E+V     GG 
Sbjct: 283 IIGVTDIGLPGRFNVENALAACAIAIAAGAEPAKLAEPLGSFRGVEHRLEYVLE--HGGV 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y + +  +NS +  +  + +    + IV+   G DR      ++  +   +  + ++  
Sbjct: 341 AYYNNSKATNS-KATMMALSSF--KQPIVLIAGGLDRGSDYAELVPSLQEGVKAVVLL-- 395

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNR--------IEAIRTAIEMLNKQDVLVV 464
                E   K+           ++  +         +EA+  A +     DV+++
Sbjct: 396 ----GETRHKLADRARQAGIEHVKVVDNGEDAAATLVEAVNKAAQFAETGDVVLL 446


>gi|302561123|ref|ZP_07313465.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
 gi|302478741|gb|EFL41834.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
          Length = 470

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 88/445 (19%), Positives = 158/445 (35%), Gaps = 63/445 (14%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G E IV +  +      F+A  R+  P+    +        A RL G      LAVTGT+
Sbjct: 68  GTELIVTAPGWRPDKPLFAAADRAGVPVW--GDV-----ELAWRLRGPDAAPWLAVTGTN 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +GL +  +G                     ++   + L  +    
Sbjct: 121 GKTTTVQMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGEERYDV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E        A
Sbjct: 163 LAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYARDKGRVYEG----NRVA 216

Query: 245 IIYADDAYSKE-----VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +Y  DA  K      V +     GCR +             V       +  +    ++
Sbjct: 217 CVYNADATGKPSTEDLVREADVEEGCRAVGFTLGAPGPSQLGVVEGILVDRAFVENRQRN 276

Query: 300 FDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              L        P    + NAL AA L  A G+ ++ V + L        R         
Sbjct: 277 AQELAEVSDVNPPAPHNIANALAAAALARAYGVPASAVRDGLRAFTPDAHR--IAHVADV 334

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G  Y+D +  +N+          + +   IV    G  +      ++G  A  L    +
Sbjct: 335 DGVTYIDDSKATNTHAAEAS----LAAYDSIVWIAGGLAKGATFDELVGGAAKRLRGAVL 390

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVAGK 467
           +        D   IR  +    P   +   +R       +A++ A  +    D +++A  
Sbjct: 391 I------GRDRALIREALARHAPEVPVVDLDRTDTGAMLQAVQEAQRLARPGDTVLLA-P 443

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
              ++ +  N  K+       +RE+
Sbjct: 444 ACASMDMFANYNKRGDAFAQAVREL 468


>gi|161507884|ref|YP_001577848.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           DPC 4571]
 gi|172048345|sp|A8YWG1|MURC_LACH4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160348873|gb|ABX27547.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DPC
           4571]
          Length = 437

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 111/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +S+ IG                 S  ++ +A  Y 
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGRGKG--------VEGSRFFVYEADEYR 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 H                         TN+  DH DY + Q  Y +A     ++ 
Sbjct: 162 RHFLAYH-------------------PDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G++         +       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFKDTDDFQAVDIKKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  + NA     +     +    + E +        RF     +   
Sbjct: 255 GKDLGEFEIHLFGDHSILNATAVIAVAYTEKVPMDDIREGMLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      + I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTK-----NKNSVIVFMGAGD 425


>gi|319897394|ref|YP_004135591.1| udp-n-acetylmuramate:l-alanine ligase [Haemophilus influenzae
           F3031]
 gi|317432900|emb|CBY81266.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3031]
          Length = 475

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 143/425 (33%), Gaps = 46/425 (10%)

Query: 59  FIPQAIA--QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA      +  A+ +   P++      +   + A  +  +H 
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRHG 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I  ++ L    +      S+          +  YL   +
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL---I 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D ++       A    F
Sbjct: 172 AEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +             Q  +                I 
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVIC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G    
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIR 335

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +   R+  DY H    + + +K  R      RI+++F                  L   
Sbjct: 336 PNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQV 395

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  I+ D     E P      + +   I + G    I   +  +      +++   D+++
Sbjct: 396 DALIMLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILISDTSQLGDVLDQIIQDGDLIL 455

Query: 464 VAGKG 468
             G G
Sbjct: 456 AQGAG 460


>gi|119478638|ref|ZP_01618541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
 gi|119448415|gb|EAW29666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
          Length = 453

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 143/407 (35%), Gaps = 50/407 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A  Q A  ++VS    L   +     ++ I+V  +              +    I A
Sbjct: 62  ISDADLQNASRLLVSPGIGLDQPAIARAIDSGIIVCGDI--------DLFCEEAKAPIAA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++V + V  + +R G S+   G                        AL  L  
Sbjct: 114 ITGSNGKTTVTTLVGLMAERCGRSAAVGGNIGV-------------------PALDLLLE 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +E SS  L+  R D +   A +  N+  DH+D +     Y  AK R+F     
Sbjct: 155 PEPDMYVLELSSFQLE--RADVLGFEAATVLNISADHMDRYPDLSTYRRAKYRIFNHCKK 212

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K    II   D     +          VLS G     +    +  ++  + +    E   
Sbjct: 213 K----IINRADP----LAAPYCGEDLDVLSFGLDRPGLKGFGLIDVNGVEYLAYQTEPLM 264

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G   + NAL A  L  A+G++ +L+ E L +   +  R + VG   +     
Sbjct: 265 AVGALKMVGRHNIENALAALALGFAMGLELSLMTEVLSEFSGLDHRCQLVGEYQQ----I 320

Query: 360 VDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             Y  +   ++   +  I  + +    V+   GG+        +  +    A   +V  +
Sbjct: 321 KYYNDSKGTNVGAAIAAIEGLAAVAKKVILIAGGEGKGADFSPLLPVLKQFARAIVVIGE 380

Query: 419 NPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE   K+   EII      +   +  +A+  A  +    D +++
Sbjct: 381 --ASEQLLKLCGDEIIA-----LRASSMQQAVEKAAMLAVSGDAVLL 420


>gi|47094075|ref|ZP_00231802.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|47017551|gb|EAL08357.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|328464970|gb|EGF36249.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           1816]
          Length = 447

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 146/419 (34%), Gaps = 60/419 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG  +   +                        +G  + ++EA  +   +H L
Sbjct: 126 IRPTSYLIGDGTGSGT------------------------KGAEYFALEACEYQ--RHFL 159

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 160 AY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--AELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
             +        G + +F   K V       +  +   G+    F  P  G+  V NAL  
Sbjct: 213 TLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHRGEFLGSFEIPTYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V + L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVEDVKKELKTFEGVKRRFSI--TEKANQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             G   I++ +  E ++        + V++  G G   V       +K+ +D +++ E 
Sbjct: 390 TKGNHIIKEEHTEELLKY------PEAVILFMGAG--DVQKFQAAYEKV-LDHEVLTEA 439


>gi|302344210|ref|YP_003808739.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
 gi|301640823|gb|ADK86145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
          Length = 446

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 128/359 (35%), Gaps = 50/359 (13%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           + P   + +TGT+GKS+V S +  + +  GL +F  G   T                   
Sbjct: 104 RPPA--VMITGTNGKSTVTSLIAAMLEAEGLRAFAGGNLGTPLCAYV------------- 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                  +Q      +E SS   D      ++   G   N+  DH+D + + + Y  +K 
Sbjct: 149 -----AGAQDDDWAVLEVSSFQTDTA--VSLRPKVGVILNITDDHLDRYDSFEQYAQSKF 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           RL      +   A++ ADD    EV  R   A   V   G         ++      Q++
Sbjct: 202 RLLANQ-AEGDVAVLCADDP---EVAARLGLAPASVWLYGAANDHRPGGRLE----NQRL 253

Query: 292 TISVEGKDF----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            + + G+           L G F   N L A     A G+ +  +   +++   +  R  
Sbjct: 254 ALELPGRRLIKLDASRSRLWGGFNKLNILAAGLAAAACGVSAQAMQRAIDEFQPLGHRLA 313

Query: 348 FVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            V    R G  + D +  +N  +++  L+ +         V+   G D+D     +  ++
Sbjct: 314 LVAE--RDGVAWYDDSKGTNVGAVQAALEALARPA-----VLLLGGRDKDGRFALLAPQL 366

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A   A + I        E    I  +I  G+       +   A+  A +     DV+++
Sbjct: 367 AA-WARLVIC-----FGEAGASIAGQI-EGLAERQVVADLPAAVTLAAQEAKPGDVVLL 418


>gi|228992648|ref|ZP_04152574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
 gi|228766980|gb|EEM15617.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
          Length = 450

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 145/397 (36%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTTLTFEMLKEGQKHPVIAGNIGTVA---CEVVQAAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VETFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQT-EADYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD     +   +      + S     +     K  A++ K +  + V+         LP
Sbjct: 224 ADDVDVMALSANSKGQKV-LFSTTKVIEDGACIKDGALYFKGEKIVEVQD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+++  ++  L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    +++   G DR      ++          AI+T        P+ 
Sbjct: 335 -MLATEKALSAFTQP--VILLAGGLDRGNEFDDLIPYF---EHVKAILTYGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    GI       N  EA+  A       DV+++
Sbjct: 386 VRAAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|298480579|ref|ZP_06998776.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. D22]
 gi|298273400|gb|EFI14964.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. D22]
          Length = 466

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 122/370 (32%), Gaps = 49/370 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T+   DH+D + T+QAY  +   
Sbjct: 155 --NLLLSQTSPYTVIEADEFDRSFHWLS---PYMTVITSTDPDHLDIYGTEQAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G     +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGATDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--------- 461
           D  I+ D  P  E P       I G+   +   N    I     M  K+D+         
Sbjct: 383 DEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEDILNILKDKNI 433

Query: 462 -LVV-AGKGH 469
            +++  G G 
Sbjct: 434 EVLITLGAGD 443


>gi|320546319|ref|ZP_08040638.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
 gi|320449040|gb|EFW89764.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
          Length = 451

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 140/429 (32%), Gaps = 62/429 (14%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G   D +      + +G + +  S    L D +  +    P +  DN      + +  + 
Sbjct: 40  GKPFDENPAAQSLLEEGIKVVCGSHPLELLDENFELMVKNPGIRYDNP-----MVSRAIE 94

Query: 111 GKHP-------------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
              P               I+ +TG++GK++  + + +     G S    G    I   A
Sbjct: 95  KNIPVITEVELAYMISDAPIIGITGSNGKTTTTTMIAETLNNGGQSGLLSG---NIGFPA 151

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +   T      L   LS     G                  D         TNL   HI
Sbjct: 152 SEVAQTATDKDTLVMELSSFQLMG-----------------TDTFHPHIAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  + + +   +   + +  D   +   K A        +    G ++
Sbjct: 195 DYHGTFENYVVAKWNIQKNMTADDFIVLNFNQDLAKELAEKTAAQVVPFSTTEKVDGAYL 254

Query: 278 HLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                         T+  +G+         +PG   V NAL    +    GI +  + E 
Sbjct: 255 DGD-----------TLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIANEAIKET 303

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     V  R + +G    G + Y D   T+  +    K +        +++   G DR 
Sbjct: 304 LSHFGGVKHRLQALG-EVNGVKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRG 359

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                ++  I      + I+ +  PR +     RA     +P +++  +  +A R A   
Sbjct: 360 NEFDELVPDITGVKL-MVILGESAPRVK-----RAADKANVP-YVDAKDVADAARIAYSK 412

Query: 456 LNKQDVLVV 464
               +V+++
Sbjct: 413 AEAGEVVLL 421


>gi|331681476|ref|ZP_08382113.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
 gi|331081697|gb|EGI52858.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
          Length = 491

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDKAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|260103187|ref|ZP_05753424.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DSM
           20075]
 gi|260083012|gb|EEW67132.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DSM
           20075]
 gi|328464729|gb|EGF36059.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           MTCC 5463]
          Length = 437

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 111/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +S+ IG                 S  ++ +A  Y 
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGRGKG--------VEGSRFFVYEADEYR 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 H                         TN+  DH DY + Q  Y +A     ++ 
Sbjct: 162 RHFLAYH-------------------PDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G++         +       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFKDTDDFQAVDIKKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  + NA     +     +    + E +        RF     +   
Sbjct: 255 GKDLGEFEIHLFGDHSILNATAVIAVAYTEKVPMDDIREGMLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      + I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTK-----NKNSVIVFMGAGD 425


>gi|315283078|ref|ZP_07871348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria marthii FSL S4-120]
 gi|313613276|gb|EFR87150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria marthii FSL S4-120]
          Length = 123

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRI 446
           CGGDRD+GKRP M KIA+D A   I T DNPRSE+P  I  ++I G+P    ++   NR 
Sbjct: 11  CGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENRR 70

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +AIR AI      DV+++AGKGHE   ++ + E     D    R
Sbjct: 71  DAIRFAINEAKTGDVILIAGKGHEDYQLIGD-EVIDFDDRVEAR 113


>gi|227014294|gb|ACP10504.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 506

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 145/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 84  ADKGATIFIGHEAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 143

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 144 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 194

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 195 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 239

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q T
Sbjct: 240 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFT 296

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 297 VVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 356

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 357 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ ++ D     E P  I       +   I    +I+ I              +L  
Sbjct: 417 EQVDVLLMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 475 GDLVLTQGAGD 485


>gi|149184749|ref|ZP_01863067.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
 gi|148832069|gb|EDL50502.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
          Length = 475

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 150/405 (37%), Gaps = 49/405 (12%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139
           SA I  + P +   N    L L  + L           +AV GTSGKS+V   +  I + 
Sbjct: 83  SAAIEDSVPEIDRANELGCLRLTRAELNSILFNTSGAGIAVAGTSGKSTVTGMLGWILEA 142

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G +        TI + A      +P   +   A + + SQ +    V+ S   +  +R 
Sbjct: 143 TGRAP-------TIMNGAVMKNFVSPERPF---ASAVVGSQSIYASEVDESDGSIALYR- 191

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                  G   N+  DH    ++ +        LF + L +   ++I ADD  +  ++ +
Sbjct: 192 ----PAVGVLLNVSLDH----KSMEELRQ----LFGDYLSRSRISVINADDEEALALLPQ 239

Query: 260 AHNAGCRVLSVGYQGKFIHLKKV------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           A +    V++ G +     +  V        +     V    +  +      +PG   + 
Sbjct: 240 AKD----VITFGIEQDKAQISIVPGSIAEGPVRQAAMVIDRHDKSEQALRLNMPGRHNLS 295

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A     A G+  A  +E L     +  RF+ VGT+     +  D+ H        L
Sbjct: 296 NALAAIAGAAAAGVPVAASVEALAGFEGLARRFDIVGTSHAAITVIDDFGHNPEKCAATL 355

Query: 374 KNIRTITSGRIIVVFGCGGD------RDQGKRPIMGKIALD----LADIAIVTDDNPRSE 423
           + +R   SGR++V F   G        D+  +  + ++A D    + D         RSE
Sbjct: 356 RTLRAH-SGRVLVFFQPHGYGPLRQMGDELAQVFVDELAEDDRVLMCDPVYFGGTVDRSE 414

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGK 467
             E+I   +            R  AI    + + +  D +VV G 
Sbjct: 415 GSERIVRLVEQAGGRAEYIPTRK-AIEDRLVNLASPGDRIVVMGA 458


>gi|317401779|gb|EFV82395.1| cyanophycin synthetase [Achromobacter xylosoxidans C54]
          Length = 871

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 128/377 (33%), Gaps = 36/377 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ VTGT+GK+ VA  V ++   SG  +   G   +   +     +        A    
Sbjct: 482 PIVGVTGTNGKTVVARLVARLLHLSGKRT---GLACSEGLYLDRRLVQKGDRADFASGTR 538

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHIDYHQTQQ-AYFNAKMRL 233
            L ++ V    +E  S  +    L   +   G  TN+   DH+      +        R 
Sbjct: 539 VLMNRNVDAAVIENDSGVILGQGLAYDRCQVGVVTNIDDADHLGDFDINETERMFNVFRT 598

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +++     A++ A D     V++ A  +   V+  G       +     +    +   
Sbjct: 599 QVDVVLPTGAAVLNARDP---RVVEMAELSDGAVIFFGIDPALPAI--TAHLQQDGRAVF 653

Query: 294 SVEGK----------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +G                            FQV N L A G   A+ I   L+   +E
Sbjct: 654 VRDGGIVLAQGAHEERLADVAAIPLTHGGRVAFQVENVLAAVGAAWALDIPVELIRAGIE 713

Query: 338 KLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
              +      ++F      G  + VD  H +++L  ++  I    S     V+  G DR 
Sbjct: 714 TFDIDQADAPWQFTLFERNGSTVVVDDVHNASALRPLIAAIDQFPSTTRAAVYSAGADRR 773

Query: 396 QGKRPIMGKIALDLADIAI------VTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIE 447
                  G++  D  D  +      VT   P  +    +R  +  G  +   I++ +  +
Sbjct: 774 DADLIEQGRLLGDAFDRVVLYDDATVTSKRPAGQARALLRQGLEQGSRVKQIIDEPDHGK 833

Query: 448 AIRTAIEMLNKQDVLVV 464
           AI + +  +   D +++
Sbjct: 834 AIESQLSGIAAGDFVLL 850


>gi|256832304|ref|YP_003161031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685835|gb|ACV08728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
          Length = 502

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 145/425 (34%), Gaps = 61/425 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S  +     + T  ++  + V         L  +  +   P   LAVTGT+GK++  
Sbjct: 74  VIASPGWPPHHEALTAAADHAVPVWSEIELAWQLRVNNEHTNKPAPWLAVTGTNGKTTTV 133

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I    GL    +G                      A  +  + +  +    +E S
Sbjct: 134 ELLATILHADGLRVATVGNVG-------------------APVIRQIQNPTIDVFVLELS 174

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L  H    ++ +A +  N+  DH+D+H +   Y + K R+F       +      DD
Sbjct: 175 SFQL--HFTYSMEPLASAILNIAEDHVDWHGSFDQYASDKARIFTH--THRACVYSEGDD 230

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-----------GKFIHLKKVCAIHNKQQVTISVEGKD 299
              + + +   + G R +SV  +           G          +   Q+   + E   
Sbjct: 231 RVVRLLHEADVHPGARAISVSAESPTPSSLGIVDGVLCDRAFTEPLTGPQRYRHAAELAQ 290

Query: 300 FDFLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              L  L       G   + N L AA L  A G+    V + ++       R E V T +
Sbjct: 291 LSDLAHLAGPDGVVGSHTITNTLFAAALARAYGVAPRAVRDGVKSFQPGRHRIEHVATVA 350

Query: 354 RG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +      G  +++ +  +N+       +    S  + +V   G  +      ++ +I   
Sbjct: 351 KNDAPQSGVTFINDSKATNAHAARASLLSLPLSSTVWIV--GGVTKGANLDSLIAEIGPQ 408

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGN-----RIEAIRTAIEMLNKQD 460
           L    ++  ++      ++I          IP  +   +        A+ TA +     D
Sbjct: 409 LRSAVVIGVEH------QEIVRAFARHAPHIPVHVASADDTGGVMRHAVNTAWKAAEPGD 462

Query: 461 VLVVA 465
           V+++A
Sbjct: 463 VVILA 467


>gi|229006196|ref|ZP_04163882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
 gi|228755037|gb|EEM04396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
          Length = 450

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 145/397 (36%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTTLTFEMLKEGQKHPVIAGNIGTVA---CEVAQAAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VETFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQT-EADYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD     +   +      + S     +     K  A++ K +  + V+         LP
Sbjct: 224 ADDVDVMALSANSKGQKV-LFSATKVIEDGACIKDGALYFKGEKIVEVQD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+++  ++  L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    +++   G DR      ++          AI+T        P+ 
Sbjct: 335 -MLATEKALSAFTQP--VILLAGGLDRGNEFDDLIPYF---EHVKAILTYGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    GI       N  EA+  A       DV+++
Sbjct: 386 VRAAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|56696080|ref|YP_166434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ruegeria
           pomeroyi DSS-3]
 gi|62900661|sp|Q5LU71|MURD_SILPO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56677817|gb|AAV94483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria pomeroyi
           DSS-3]
          Length = 466

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 137/409 (33%), Gaps = 51/409 (12%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
             ++VS      Y   +          + V ++   F   FA   +        ++AVTG
Sbjct: 68  ACLIVSPGIPHLYPAPNPVVAAALEAGVPVDNDIGLFFRSFAGPEWDGFDTLPRVVAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ ++ +  I   +G      G                         L     +  
Sbjct: 128 SNGKSTTSALIHHILSEAGRPVQLAGNIG-------------------RGVLDIEPGEEG 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           + V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 169 SVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRA 226

Query: 243 PAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              +  D++    +  +        RV+ V    K                      +  
Sbjct: 227 VIGV--DESEGLYLAGQMSEGPGDDRVIRVSVSRKLTGPGWQVFARKGYLSEYRKGRQAG 284

Query: 301 DFLFP----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    LPG     NA  A   C A+G+    +   +     +P R + V     GG
Sbjct: 285 SIDLRDIRGLPGAHNHQNACAAYAACRALGLSPKAIEAGMRSYPGLPHRSQIVAEA--GG 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             YV+ +  +N ++  LK +      R I     G  ++ G   + G +A  L    I  
Sbjct: 343 VTYVNDSKATN-VDAALKALGAFKRIRWIC---GGLQKEGGIAALNGGLAEVLKAYVIG- 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
               R      ++ E+   +   ++     EA+  A+      D +++A
Sbjct: 398 ----REAAGFALQLEVESEVCTTMD-----EAVARAMAEAEPGDTVLLA 437


>gi|46907836|ref|YP_014225.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226224206|ref|YP_002758313.1| UDP-N-acetyl muramate-alanine ligase [Listeria monocytogenes
           Clip81459]
 gi|254824335|ref|ZP_05229336.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|254852227|ref|ZP_05241575.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|254931544|ref|ZP_05264903.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|254994071|ref|ZP_05276261.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           J2-064]
 gi|300766118|ref|ZP_07076085.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|59798317|sp|Q71Z62|MURC_LISMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509776|sp|C1KVQ2|MURC_LISMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46881105|gb|AAT04402.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876668|emb|CAS05377.1| Putative UDP-N-acetyl muramate-alanine ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605535|gb|EEW18143.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|293583099|gb|EFF95131.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|293593569|gb|EFG01330.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|300513199|gb|EFK40279.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|332312046|gb|EGJ25141.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes str.
           Scott A]
          Length = 447

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 146/419 (34%), Gaps = 60/419 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG  +   +                        +G  + ++EA  +   +H L
Sbjct: 126 IRPTSYLIGDGTGSGT------------------------KGAEYFALEACEYQ--RHFL 159

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 160 AY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--AELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
             +        G + +F   K V       +  +   G+    F  P  G+  V NAL  
Sbjct: 213 TLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V + L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVEDVKKELKTFEGVKRRFSI--TEKANQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             G   I++ +  E ++        + V++  G G   V       +K+ +D +++ E 
Sbjct: 390 TKGNHIIKEEHTEELLKY------PEAVILFMGAG--DVQKFQAAYEKV-LDHEVLTEA 439


>gi|121587635|ref|ZP_01677399.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|153818410|ref|ZP_01971077.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|20532180|sp|Q9KPG8|MURC_VIBCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121548145|gb|EAX58218.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|126511043|gb|EAZ73637.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|327484896|gb|AEA79303.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae LMA3894-4]
          Length = 486

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 145/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 64  ADKGATIFIGHEAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 124 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 175 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q T
Sbjct: 220 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFT 276

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 277 VVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 336

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 337 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 397 EQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 454

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 455 GDLVLTQGAGD 465


>gi|163802645|ref|ZP_02196536.1| fructose-1,6-bisphosphatase [Vibrio sp. AND4]
 gi|159173533|gb|EDP58353.1| fructose-1,6-bisphosphatase [Vibrio sp. AND4]
          Length = 453

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 120/360 (33%), Gaps = 29/360 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +        
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEVIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D+  ++V++R           G  G +   K +       +  
Sbjct: 207 LV-RTVPGNGLILAPKQDSSLQDVIER--GCWTEKQFSGIDGDWQASKLLVD---GSKFE 260

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+    + + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VLLQGEKVGIVDWDLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
             +G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 321 E-QGVTVYDDFAHHPTAIELTLGGLRNKVGQKRILAVLEPRSATMKRGVHKNTIAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +    D +    +I          + +    +   +E     D ++V   G
Sbjct: 380 ADEVFLFQPD----DIDWSVQDIAEQCQQRAFVEADMDTFVAKIVERAQPSDQILVMSNG 435


>gi|315224116|ref|ZP_07865956.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga ochracea
           F0287]
 gi|314945849|gb|EFS97858.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga ochracea
           F0287]
          Length = 450

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 104/320 (32%), Gaps = 40/320 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ +S +  +   +G         +++S+F         S          L
Sbjct: 115 LAVAGTHGKTTTSSILAHLLVEAG---------ASVSAFLGGIAENFNS---------NL 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  +   EA        RL          T++  DH+D +  +Q           ++
Sbjct: 157 VLKGSEYTVAEADEFDRSFLRLS---PNIACITSMDADHLDIYGDKQHLIEGFREFAGKI 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
            P  S  +    D   +              + G +       + +   +         +
Sbjct: 214 KPGGSLIVRNGLDIEGE--------------TYGLEDNADYTFQNITVKNGIYHFDFHYK 259

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G  + D+    PG   + N L A  + +  G     +L HL     V  RF ++      
Sbjct: 260 GGVYKDYTLLKPGRHNLLNTLAAVSMAVKAGFAPEKLLPHLATFKGVKRRFSYI-IKEDN 318

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH  + +  + + +  +       +VF                 +L   D  +
Sbjct: 319 FAFIDDYAHHPSEINALFQAVEEMYPHTPKTIVFQPHLFTRTRDFLDDFAKSLSQFDDVV 378

Query: 415 VTDDNPRSEDP-EKIRAEII 433
           + D  P  E P E I ++++
Sbjct: 379 LLDIYPARELPIEGITSQVL 398


>gi|239636818|ref|ZP_04677820.1| Mur ligase middle domain protein [Staphylococcus warneri L37603]
 gi|239598173|gb|EEQ80668.1| Mur ligase middle domain protein [Staphylococcus warneri L37603]
          Length = 686

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 119/356 (33%), Gaps = 32/356 (8%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           + +   +    P L+V ++ K     A  +  ++   ++A+TG+ GKSS       + + 
Sbjct: 81  ETYVEGLEYKIPQLIVQDSIKAFKTLAIYIRNQYKNPVIAITGSMGKSSTRMLTASLLKD 140

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                   G  +  ++   +      +P +            V   S+ A +H  +    
Sbjct: 141 Y-PIQENRGNNNIRAAIYANMLKLIKNPDF-----------AVIETSLNAINHRENTSL- 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K      T +G  H     + +     K R+F  L  +   AII  D  ++  ++ +
Sbjct: 188 -YLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGL-SENGVAIINGDTMFADYLIDQ 245

Query: 260 AHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           AH     V +              ++  +    ++ I V G+  ++      +  + N L
Sbjct: 246 AHQYTQNVQTYSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNYQINTFSDGMISNTL 305

Query: 317 VAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS------NSL 369
            A  +   + I   A  L + E    +    E      +     +D  H +      N++
Sbjct: 306 AAILILKNLNIPVKAEYLYNFEPFSKILKMKEIQTPTHK--TTLIDDTHNASLPAMINAI 363

Query: 370 EMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +           G  I+        G       + ++  ++   AD  +  DD+ R
Sbjct: 364 KA-FDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNADYILCLDDDLR 418


>gi|170755247|ref|YP_001783157.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum B1 str. Okra]
 gi|226711900|sp|B1IGJ0|MURD_CLOBK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169120459|gb|ACA44295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum B1 str. Okra]
          Length = 458

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 124/362 (34%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ +R G  ++  G   T                
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKREGYRTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  +  +   A         +G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNN-LLVLNKDDDLTNGMENEA---------LGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++++GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTIQGKEVCDSKDINLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+     G + Y D   +S S     + +  + S    V+   GG   +     + +  
Sbjct: 319 EFI-REVNGVKYYNDSIASSPS-----RTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQD 460
            D   I I+  D        KIR+     I         +   +  EA++ A +M  K D
Sbjct: 373 YDKIKILILMGD-----TKNKIRSAFEKVISYKKCEMEIVIVNSMEEAVKVADDMAEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|261881129|ref|ZP_06007556.1| UDP-N-acetylmuramate-alanine ligase [Prevotella bergensis DSM
           17361]
 gi|270332134|gb|EFA42920.1| UDP-N-acetylmuramate-alanine ligase [Prevotella bergensis DSM
           17361]
          Length = 459

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 80/435 (18%), Positives = 139/435 (31%), Gaps = 53/435 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP A       +VV +     +    +        V    + L        G      L 
Sbjct: 63  IPHACRNKETCLVVYTPAVSDNHKELLYFRNNGFEVQKRAQVLGTLTRTHKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK+S ++    I  +S      +   + +   +++               +Y+ S
Sbjct: 117 VAGTHGKTSTSTMCAHIMHQS-----HVECNAFLGGISKNYGT------------NYILS 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V +EA       H L          T+   DH+D + T++AY  +  R + EL+ 
Sbjct: 160 DSSDFVVIEADEFDRSFHWLS---PWMTVITSTDPDHLDIYGTKEAYLES-FRHYTELIR 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                II+ D       MK     G +  +        H + +     +         ++
Sbjct: 216 PGGALIIHTDLE-----MKANVQDGVKTYTYSRDKGDFHAENIVIEDGEITFDFVSPIEN 270

Query: 300 FD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   P    + N + A  +    G  +  +   +E    V  RF+F   N +    
Sbjct: 271 ITGIKPGHPIPINIENGVAAMAMAQLNGCTANELKYGMETYRGVDRRFDFKVRNDKH-VF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DYAH    +    K+++ +   R I  +F                 +L   D  I+TD
Sbjct: 330 LTDYAHHPKEILQSAKSLKELYGNRKITAIFQPHLYTRTRDFYQDFANSLSHFDEVILTD 389

Query: 418 DNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH- 469
             P  E P      + I   I  G+    I K +  + ++         DVLV+ G G  
Sbjct: 390 IYPAREQPIPGITSKIIFDNIKPGVEKQMIRKEDFPDFVKN-----RDFDVLVILGAGDL 444

Query: 470 ETV-----HIVTNGE 479
           E        I+   +
Sbjct: 445 ENYATQIAQIIEKRK 459


>gi|323343869|ref|ZP_08084096.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
 gi|323095688|gb|EFZ38262.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
          Length = 458

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 133/408 (32%), Gaps = 48/408 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ + A   +        +    +     + L        G      L   GT GK++ +
Sbjct: 75  VIYTPAIPSEHQELQYFKDNGFEIEKRA-QVLGRLTRTHKG------LCFAGTHGKTTTS 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    I  +S L          +   +++               +Y+ S     V +EA 
Sbjct: 128 TMCAHIMHQSHLDCNAF-----LGGISKNYGT------------NYILSDTSDFVVIEAD 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H L   +      T+   DH+D + T++AY  +  R +  L+ K    II+ D 
Sbjct: 171 EFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTTLIQKGGALIIHRDL 226

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
                 MK+    G +V          H + +   + +         ++  D     P  
Sbjct: 227 E-----MKQNVQEGVKVYDYSLHEGDFHAENIVIENGEITFDFISPIENIKDIRLGQPIP 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N + A  +    G  S  +   ++  H V  RF+F    +       DYAH    +
Sbjct: 282 INIVNGIAAMAMAQLNGCTSEELRYGMKTYHGVERRFDF-KIKTDKLVFLSDYAHHPKEI 340

Query: 370 EMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
               K+IR +   R I  +F                 AL   D  I+ D  P  E P   
Sbjct: 341 YQSAKSIRELYKDRKITAIFQPHLFTRTRDFYKEFAEALSQLDEVILCDIYPAREQPISG 400

Query: 426 ---EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              + I   +  G+    I K + I  ++         DVLV+ G G 
Sbjct: 401 VTSKLIYDNLKEGVEKSMIHKEDVIPLVKQ-----RNFDVLVILGAGD 443


>gi|311031282|ref|ZP_07709372.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. m3-13]
          Length = 436

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 130/399 (32%), Gaps = 59/399 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++  A    N P++      +FL  F  +         +AVTG  GK+S    +  + Q 
Sbjct: 75  EEIEAAKELNIPVIRYP---QFLGQFMEKY------TSIAVTGAHGKTSTTGLLSHVIQG 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +S+ IG  +      +D+           +                   H L  +  
Sbjct: 126 AKPTSYLIGDGT--GRGVEDSEYFVFEACEYKR-------------------HFLSYY-- 162

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMK 258
                     TN+  DH DY  +    F+A    F+E+  +    II   DD Y +++  
Sbjct: 163 ----PDYTIMTNIDFDHPDYFGSIDDVFSA----FQEMAMQVKKGIIACGDDEYLQKIQA 214

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
           +           G +  F   + V          + V    +  F     G+  + N+L 
Sbjct: 215 KVP---VIYYGFGEENDFQ-ARHVEKSTEGTTFDVYVRNNHYATFKINGYGDHNIMNSLA 270

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI- 376
              LC    I   ++   L     V  RF      S+   +  DYAH    +   +    
Sbjct: 271 VIALCHYEEIPVDVIQSQLLTFEGVKRRFSEKVIGSQ--VLIDDYAHHPTEIRATIDAAN 328

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHG 435
           +      +I VF                 +L  AD   + D      E+  K+       
Sbjct: 329 QKYPDRDVIAVFQPHTFTRTQTFLNEFAESLSGADHVYLCDIFGSARENQGKLT------ 382

Query: 436 IPGFIEKGNRIEAIR---TAIEMLNKQDVLVVAGKGHET 471
           I   ++K +R E +    TA+   ++  V++  G G  T
Sbjct: 383 INDLLDKIDRAEILSEEGTALLAKHENSVIIFMGAGDVT 421


>gi|307298495|ref|ZP_07578298.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915660|gb|EFN46044.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 447

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 96/279 (34%), Gaps = 20/279 (7%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH++++           R F   +      +  ADD  S+ +   
Sbjct: 164 ASFKPDYAVITNVRGDHLEHYDNSFDNLKNHFRYFSRSV--GKLLVTNADDPASERI--- 218

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
                   L+ G    +            Q        +D   F   +PGEF VYNA  A
Sbjct: 219 ----FTDTLTFGKDRGYYRFTDRSTGIMNQTFRCFRGNEDLGLFKLMIPGEFNVYNATAA 274

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIR 377
             L   +G+    +   LE    V  RF F G +  R    + DYAHT + +   ++  R
Sbjct: 275 IALTHEMGVPIESIKNSLESYRSVDRRFTFRGLDDFRNLFFFDDYAHTPDEISNTIRGAR 334

Query: 378 TITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EIIH 434
               G  +IVVF         +       +L  A    V       E  +      E++ 
Sbjct: 335 EFFPGKNVIVVFQPHRYSRLVRENGRFANSLKDATEVCVFKLYEAYEKGQYAIDETEVLK 394

Query: 435 GIPGFIEKGNRIEAIRT--AIEMLNKQ-D-VLVVAGKGH 469
           G+  +      + A+     +E L K+ D V++  G G 
Sbjct: 395 GLSSYGVPA--VHAVNYSEILEWLEKKRDAVILFLGAGD 431


>gi|256843669|ref|ZP_05549157.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           125-2-CHN]
 gi|293380420|ref|ZP_06626489.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           214-1]
 gi|256615089|gb|EEU20290.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           125-2-CHN]
 gi|290922999|gb|EFD99932.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           214-1]
          Length = 437

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 111/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +S+ IG          D+R                
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGR--GKGVADSRFFVYEAD--------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 159 ----------EYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G+         ++       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFNDTDDFQATQIQKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  + N+     +     +    + E +        RF     +   
Sbjct: 255 GKDLGEFEIHLFGDHSILNSTAVIAVAYTEKVPMDDIREGMLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      + I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTK-----NKNSVIVFMGAGD 425


>gi|254436097|ref|ZP_05049604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
 gi|207089208|gb|EDZ66480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
          Length = 463

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 96/466 (20%), Positives = 170/466 (36%), Gaps = 61/466 (13%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDG----HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            DSR    G +  A+     D       F   A+   AE +VVS   +L + +       
Sbjct: 50  MDSRKSPPG-L-AALQEQNPDAVLRLGGF-DAALIAEAEQLVVSPGVALSEPAILAARAR 106

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I VV +      LFAS +       ++ +TG++GKS+V S ++ + +++G      G  
Sbjct: 107 GIPVVGDIE----LFASYVK----APVIGITGSNGKSTVTSLLEAMARQAGRQVLAGGNL 158

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T                    AL  L         +E SS  L+      +  +A    
Sbjct: 159 GT-------------------PALELLEKPVPDLYILELSSFQLE--TTYTLDAVAACVL 197

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R++          +I ADD     +++   +  C   ++
Sbjct: 198 NISPDHMDRYPDLDAYCQAKARIYRG----TGTMVINADDFRVASLVQ--PHRPCLRFTL 251

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGI 327
           G      +  +  A       T  V G +        PL G   + NAL A  L  A+G+
Sbjct: 252 GMPAVDEYGLQERAGE-----TWLVRGHERLLSARRLPLAGRHNLANALAALALGEAVGL 306

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +L  L+    +P R E++     G R Y D   T+  +   +  I  I     +++
Sbjct: 307 PRAAMLSALQAFSGLPHRCEWL-AEVNGVRWYNDSKGTN--VGATVAAIEGIPCQGKLIL 363

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              G  +     P+   +      + ++  D  R E        ++   P      +  E
Sbjct: 364 IAGGVGKGADFSPLSKPLIQRARAVVLMGQDASRLE-------AVLASGPPLYRVNSMDE 416

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           A+  A  +    D ++++     +  +  + E +       +REIL
Sbjct: 417 AVVKANVLAQSGDCVLLS-PACASFDMYADFEARGQAFRQAVREIL 461


>gi|297539796|ref|YP_003675565.1| UDP-N-acetylmuramate [Methylotenera sp. 301]
 gi|297259143|gb|ADI30988.1| UDP-N-acetylmuramate [Methylotenera sp. 301]
          Length = 455

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 127/400 (31%), Gaps = 31/400 (7%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS    L      +    P +            A  +     + +LAV GT GK++ +S
Sbjct: 70  VVSRGNPL--MEEILNQGLPYI------SGPQWLAENVL--QGKWVLAVAGTHGKTTTSS 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  + + +GL+   +     I    ++  ++   P    +    +S   V       ++
Sbjct: 120 MLAWVLEYAGLAPGFL-----IGGVPENFGVSARLPQTPKQDAKSISPFFVIEADEYDTA 174

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               + +    +       NL  DH D      A       L    +P++   +      
Sbjct: 175 FFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIEKQFHHLV-RTVPQQGLVVSNK--- 230

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEF 310
               + +         L          ++ V A   + +  +  +G+   +  + + GE 
Sbjct: 231 -QASLQRVIDKGCWSNLEYFGSADGWEVQNVDA---QGRFDVVFKGERQGNLSWDILGEH 286

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL        +G+   + +E L +   V  R E  G       +Y D+AH   +++
Sbjct: 287 NRMNALAVIAAARHVGVAPCIAIEALSEFKNVKRRMEIKGV-VNDITVYDDFAHHPTAID 345

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLADIAIVTDDNPRSEDPEKI 428
             +  +R+      I+              +      +L  AD+      N   +  E +
Sbjct: 346 TTVAGLRSKVGKARILAVLEPRSNTMKLGVMKNALPASLKEADLVFCYGANLGWDAAEAL 405

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I      + +    + AI  A       D ++V   G
Sbjct: 406 ST-IKDKASVYEDLNTMVAAIAKA---AKPGDYVLVMSNG 441


>gi|153214069|ref|ZP_01949203.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
 gi|124115495|gb|EAY34315.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
          Length = 486

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 144/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 64  ADKGATIFIGHEAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 124 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 175 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+     + ++       + Q T
Sbjct: 220 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSDDADVRIENYRQNGQQGQFT 276

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 277 VVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 336

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 337 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 397 EQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 454

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 455 GDLVLTQGAGD 465


>gi|316940202|gb|ADU74236.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 1313]
          Length = 466

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 124/381 (32%), Gaps = 40/381 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I AVTG+ GK++  + +  + +  G   +  G    I                +   
Sbjct: 116 PAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGG---NIGIPLLSKIEEIKDTDKVVLE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS      +T                          TN+  +H+D H++ + Y +AK  +
Sbjct: 173 LSSFQLHTMTK------------------SPNVAVVTNVSPNHLDVHKSMEEYVSAKKNI 214

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F     ++    +  D+  ++E    A              K   LK    +    +   
Sbjct: 215 FRYQSAEDRLV-LNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDGETET 273

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG   V N L A    I   +D  ++ +       V  R E V    
Sbjct: 274 EIAKAS---DIVIPGVHNVENFLAATAAVIDC-VDRDVIRKVATTFTGVEHRIELV-REI 328

Query: 354 RGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G + Y D  A +       L + +       +++   G D+      +   IA  +  +
Sbjct: 329 NGVKFYNDSIASSPTRTIAGLNSFKD-----KVILIAGGYDKKIPYDALGPVIAEKVKCL 383

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++    P+ E    +R E      G      +  +  EA++ A    +  DV+ +    
Sbjct: 384 VLIGQTAPKIEK--ALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVV-ILSPA 440

Query: 469 HETVHIVTNGEKKMSVDCDII 489
             +  +  N E++ +   +I+
Sbjct: 441 SASFDMFKNFEERGNRFKEIV 461


>gi|229846170|ref|ZP_04466282.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
 gi|229811174|gb|EEP46891.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
          Length = 475

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 128/376 (34%), Gaps = 40/376 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA      +  A+ +   P++      +   + A  +  +H
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I  ++ L    +      S+          +  YL   
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D ++       A    
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +             Q  +                I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINILLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFI 334

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +   R+  DY H    +++ +K  R      RI+++F                  L L
Sbjct: 335 RPNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSL 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGEAP 410


>gi|167627721|ref|YP_001678221.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597722|gb|ABZ87720.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 561

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 133/374 (35%), Gaps = 29/374 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +    + VTGT+GK++       IC+ +G      G TST      D  +          
Sbjct: 170 YDIPAVIVTGTNGKTTTVRLTDYICRTAGK---LTGYTSTDWVKVNDELIDEGDYSGPTG 226

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAK 230
               L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T      AK
Sbjct: 227 HQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAELAEAK 286

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQ 289
             +F   + K+S A+I  D+ Y K+   +   A   V           +L K       +
Sbjct: 287 AIVF-RTMGKDSHAVINLDNFYMKQQFDKLSCAKIIVTQDPDQHDMDYYLSKADYACVVE 345

Query: 290 QVTISVEGK----------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               +   K          D         +  + NA++A  L   +GID   + + L   
Sbjct: 346 NGIFTWIDKKSKKQILPVVDAPLTVKGFAKHNIENAMIAIALSFKLGIDFDYIEKALGSY 405

Query: 340 --HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396
                  R              +DYAH    +E +L  I+     G+  ++ G  GDR  
Sbjct: 406 KNDPKVNRGRANIFEFDNKVAVLDYAHNEAGMEALLNMIKAYDKGGKKYLMIGTTGDRKY 465

Query: 397 GKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEII-HGIPGFIEKGNRIEAI 449
               I   I     D  ++  T+   R     E P  IR ++   G        +  E I
Sbjct: 466 LISGINDIILKHGIDFVVIKETEKYLRGAKPLELPTLIRDDLERKGFDISKTYISHGELI 525

Query: 450 --RTAIEMLNKQDV 461
             +  ++ML   D+
Sbjct: 526 GVKYILDMLEDNDI 539


>gi|212213338|ref|YP_002304274.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuG_Q212]
 gi|226706320|sp|B6J2Q2|MURC_COXB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212011748|gb|ACJ19129.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuG_Q212]
          Length = 465

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 136/434 (31%), Gaps = 57/434 (13%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
             DG      AI Q A+  V SSA      +  A  ++  P+L      K   + A+ + 
Sbjct: 59  NHDG-----TAITQ-ADCAVYSSAIGATNPELMAAKQAKIPLL------KRGEMLANLMK 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  +AV G  GK++ +  +      +    +F +G    +++     R+       
Sbjct: 107 EYQS---IAVAGAHGKTTTSGMLSHAFVEANLDPTFMVG--GVLNNSQTPARVGNG---- 157

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               ++       + + +                      TN+  DH+  +         
Sbjct: 158 -HYFIAEADESDASFLFM---------------HPDIAVVTNIDADHLSTYDGDFNRLKQ 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNK 288
               F E   ++   ++  DD   +E+         RV++ G+     + +   C    +
Sbjct: 202 TYIQFLEQTAQDGVVVLCLDDPILREIAPLLSR---RVITYGFSSDAQYRVVDYCQQGIQ 258

Query: 289 QQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               I    +         +PG+    NA     +   + ++   +L+ L     V  RF
Sbjct: 259 SLFQIHSPQRKAPLTVKLSMPGQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRF 318

Query: 347 EFVGT---NSRGGRIYVDYAHTSNSLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
              G          I  DY H  N ++  +          R+++VF              
Sbjct: 319 TIRGEMILPKGNALIIEDYGHHPNEIKATLAAARAAWPERRMVLVFQPHRYSRTRDLMTE 378

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEM 455
               L   D  ++ +     E P        +   + +G+         ++ +  T  ++
Sbjct: 379 FVSVLAETDWLVLLEVYSAGEMPIPGADGMALIKMMSNGMAQKTTFVPLLQNLPETLQKL 438

Query: 456 LNKQDVLVVAGKGH 469
               D++++ G G+
Sbjct: 439 SQPNDIIILQGAGN 452


>gi|229507538|ref|ZP_04397043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
 gi|229355043|gb|EEO19964.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
          Length = 506

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 144/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 84  ADKGATIFIGHEAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 143

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 144 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 194

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 195 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 239

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q  
Sbjct: 240 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFN 296

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 297 VVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 356

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 357 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 416

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ I+ D     E P  I       +   I    +I+ I              +L  
Sbjct: 417 EQVDVLIMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 474

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 475 GDLVLTQGAGD 485


>gi|145637109|ref|ZP_01792772.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
 gi|145269763|gb|EDK09703.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
          Length = 475

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 126/375 (33%), Gaps = 39/375 (10%)

Query: 59  FIPQAIA--QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA      +  A+ +   P++      +   + A  +  +H 
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRHG 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I  ++ L    +      S+          +  YL   +
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL---I 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+D ++       A    F
Sbjct: 172 AEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +             Q  +                I 
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVIC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G    
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIR 335

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +   R+  DY H    + + +K  R      RI+++F                  L   
Sbjct: 336 PNGKVRLVDDYGHHPTEVGVTIKAAREGWGEKRIVMIFQPHRYSRTRDLFDDFVQVLSQV 395

Query: 411 DIAIVTDDNPRSEDP 425
           D  I+ D     E P
Sbjct: 396 DALIMLDVYAAGEAP 410


>gi|299147129|ref|ZP_07040196.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_23]
 gi|298515014|gb|EFI38896.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_23]
          Length = 458

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 127/367 (34%), Gaps = 43/367 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T+   DH+D + T+QAY  +   
Sbjct: 155 --NLLLSQASPYTVIEADEFDRSFHWLS---PYMTVITSTDPDHLDIYGTEQAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKLK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D  I+ D  P  E P      + I   +  GI   + K    E I   + +L  +++ ++
Sbjct: 383 DEVILVDIYPAREAPIPGVTSKLIYDNLRPGIEKSMCK---KEEI---LNILKDKNIEVL 436

Query: 464 V-AGKGH 469
           +  G G 
Sbjct: 437 ITLGAGD 443


>gi|170768600|ref|ZP_02903053.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
 gi|170122704|gb|EDS91635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
          Length = 491

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 141/420 (33%), Gaps = 54/420 (12%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+   S+ I ++ P +V  +  +        + A  +  +H    +A+ GT GK++ 
Sbjct: 77  RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTT 133

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V  I   +GL    +      ++                  ++       + +    
Sbjct: 134 TAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------RYLIAEADESDASFL---- 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       ++ +    TN+  DH+D +Q            F   LP    A++  D
Sbjct: 184 -----------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVD 232

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           D   +E++ R      +  + G+ +   + ++    I  +   T+  + K+        P
Sbjct: 233 DPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IY 359
           G     NA  A  +    GID   +L  LE       RF+F+G       N + G   + 
Sbjct: 290 GRHNALNAAAAVAVATEEGIDDNAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLV 349

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    ++  +K  R       ++++F                  L   D  ++ + 
Sbjct: 350 DDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEV 409

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
            P  E P  I       +   I    +I+ I         EML       D+++V G G+
Sbjct: 410 YPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|332286762|ref|YP_004418673.1| L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
           [Pusillimonas sp. T7-7]
 gi|330430715|gb|AEC22049.1| L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
           [Pusillimonas sp. T7-7]
          Length = 452

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 126/363 (34%), Gaps = 35/363 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +++LAV GT GK++ +S +  I + +G     +                      L  + 
Sbjct: 103 QHVLAVAGTHGKTTSSSMLAWILEHAGRRPNFL---------------IGGIADDLQVSA 147

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            Y + + +  +  +         R   +  +       NL  DH D      A    +  
Sbjct: 148 RYQAERPLFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAI-QTQFH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P +   +  AD A   +V++R       V + G  G++    +  A  +     
Sbjct: 207 HLVRTIPSQGRIVRPADSAALDQVLER--GCWTPVHTFGPGGQW----EAQASEHASHFP 260

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++ +G+      + L GE    NAL A      +G+     +E L     V  R E  GT
Sbjct: 261 VTHQGRHAGTIRWALTGEHNRMNALAALAAAEHLGVGPQAGIEALSAFRGVKRRMELRGT 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
             R   +Y D+AH   ++   L+ +R     R I+              +  ++  AL  
Sbjct: 321 -VREVDVYDDFAHHPTAIATTLEGLRKQVGKRRILAVLEPRSNTMKLGAMAARLPEALAQ 379

Query: 410 ADIAIV----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD+       +  +    DP ++ + +      + +    + AI  A       D ++V 
Sbjct: 380 ADLVFCFGADSGKHALGWDPAQVLSPLGARASSYSDLDKMVGAICQA---AQPGDSVLVM 436

Query: 466 GKG 468
             G
Sbjct: 437 SNG 439


>gi|126172967|ref|YP_001049116.1| UDP-N-acetylmuramate [Shewanella baltica OS155]
 gi|125996172|gb|ABN60247.1| UDP-N-acetylmuramate [Shewanella baltica OS155]
          Length = 463

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 112/361 (31%), Gaps = 28/361 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I    G     +     I    Q+  ++         
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFL-----IGGVPQNFGVS--------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D      A     
Sbjct: 150 --ARLGKTAFFVVEADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQF 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P E   +  AD    K+ +     +      +       + K +    +  +
Sbjct: 208 NHLV-RTVPGEGKIVWPADSHAVKQTIDMGCWSEQETYHLAESANGWYGKALSDDCH--R 264

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    L + L G+  + NA++A      +G+  +  +E L K      R E +
Sbjct: 265 FEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELL 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT   G  +Y D+AH   ++   LK +R       I V                 +A  +
Sbjct: 325 GT-VNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSM 383

Query: 410 --ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             AD A +            ++  +   +          + +          D +VV   
Sbjct: 384 MQADEAFL---YQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVMSN 440

Query: 468 G 468
           G
Sbjct: 441 G 441


>gi|153830112|ref|ZP_01982779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
 gi|148874424|gb|EDL72559.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
          Length = 451

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  + +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDKFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|256003375|ref|ZP_05428366.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
 gi|255992665|gb|EEU02756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
          Length = 434

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 124/381 (32%), Gaps = 40/381 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I AVTG+ GK++  + +  + +  G   +  G    I                +   
Sbjct: 84  PAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGG---NIGIPLLSKIEEIKDTDKVVLE 140

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS      +T                          TN+  +H+D H++ + Y +AK  +
Sbjct: 141 LSSFQLHTMTK------------------SPNVAVVTNVSPNHLDVHKSMEEYVSAKKNI 182

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F     ++    +  D+  ++E    A              K   LK    +    +   
Sbjct: 183 FRYQSAEDRLV-LNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDGETET 241

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG   V N L A    I   +D  ++ +       V  R E V    
Sbjct: 242 EIAKAS---DIVIPGVHNVENFLAATAAVIDC-VDRDVIRKVATTFTGVEHRIELV-REI 296

Query: 354 RGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G + Y D  A +       L + +       +++   G D+      +   IA  +  +
Sbjct: 297 NGVKFYNDSIASSPTRTIAGLNSFKD-----KVILIAGGYDKKIPYDALGPVIAEKVKCL 351

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++    P+ E    +R E      G      +  +  EA++ A    +  DV+ +    
Sbjct: 352 VLIGQTAPKIEK--ALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVV-ILSPA 408

Query: 469 HETVHIVTNGEKKMSVDCDII 489
             +  +  N E++ +   +I+
Sbjct: 409 SASFDMFKNFEERGNRFKEIV 429


>gi|120612620|ref|YP_972298.1| cyanophycin synthetase [Acidovorax citrulli AAC00-1]
 gi|120591084|gb|ABM34524.1| cyanophycin synthetase [Acidovorax citrulli AAC00-1]
          Length = 861

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 123/358 (34%), Gaps = 30/358 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +    G  +     T+T   +    ++ +        A + L+        +E + 
Sbjct: 487 LIAHLFTAHGWRTAM---TNTDGVYVNGRQIDSGDCSGPRSARNALAHPETDAAVLECAR 543

Query: 192 HGLDQHRLDGIKLIAGSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            GL +  L   +      TN+G  DH+   +  T Q     K R+  + +  +  A++ A
Sbjct: 544 GGLLREGLGFDRCQVAVVTNVGEGDHLGLNFIHTVQDVAVLK-RVVVQNVAADGYAVLNA 602

Query: 249 DDAYSKEV------------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            D +   +            + R H       + G +  ++  + + A  +  +  I++ 
Sbjct: 603 ADPHVAAMAPSSPGKVIFFALDRHHPVMATHRAQGQRVVYVDGEHIVAAEDSWREQIAL- 661

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSR 354
            +D          FQV NA+ A      +G+    +   L             F   + R
Sbjct: 662 -RDIPLTRNGTIGFQVENAMAAIAAAWGVGLPWDTIRRGLAGFMNDSDNAPGRFNVMDFR 720

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +  DY H  +++  +++ +  + + R  VV    GDR         +I     D  I
Sbjct: 721 GATVIADYGHNPDAMRALVQAVGAMPARRRSVVISGAGDRRDEDIRGQTEILGAAFDDVI 780

Query: 415 VTDDNP-RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  D   R     ++ A +  G+ G        E      AI  A+  L   D+ +V 
Sbjct: 781 LYQDAAQRGRADGEVMALLREGLAGASRTKYIDEIRGEFAAIDAALGRLEPGDLCLVL 838


>gi|289640742|ref|ZP_06472913.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
 gi|289509318|gb|EFD30246.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca
           glomerata]
          Length = 500

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 126/405 (31%), Gaps = 65/405 (16%)

Query: 50  VGNKEDGHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           VG   D     P A+     G + +V SSA+              + V   ++    L A
Sbjct: 56  VGAVTD-----PAALDAELDGVDVVVASSAFPDGHPELLAARRRGLPVRRRSQWLPELTA 110

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                    +++AV G+ GKS+ ++ +  + + +G     + PT+ I +           
Sbjct: 111 GY-------DLVAVAGSHGKSTTSAMLTLVLRAAG-----VDPTAVIGAEVAQLGG---- 154

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                   + L   G     +EA  +G       G+       TN+  +H D    + + 
Sbjct: 155 --------NALVGAG-RVFVLEADEYGGA---FAGLDPALAVITNVEWEHPDLFPDEASV 202

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-------------------GCRV 267
             A    F   +      ++  DD   + V+     +                     RV
Sbjct: 203 RRA-FTAFAARVRPGGTLVVCGDDPGVRAVLAALPASAPVSESGSDAGPGDTTGGGRARV 261

Query: 268 LSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA 324
           +  G Q    +  +         Q+ T+  +G D       LPG   V NAL        
Sbjct: 262 IDYGLQPGRSWQAVNLRTTPGGGQRATVRHDGDDVGTLTLALPGAHTVRNALAVLAAATE 321

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGR-IYVDYAHTSNSLEMILKNIRTI 379
           +G++ A  L  L        RF  VG    T+ +G   +  DYAH    +   L   R  
Sbjct: 322 LGVEVASALAILATFTGADRRFTLVGTAPATDRQGPLEVIDDYAHHPTEIRATLAAARQR 381

Query: 380 TS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
                + V                   A   AD   VTD     E
Sbjct: 382 AGTREVWVAVQPHTFSRLAALLDDFADAFTDADRVYVTDIYAARE 426


>gi|189082527|sp|Q10XH7|MURC_TRIEI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 539

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 136/442 (30%), Gaps = 80/442 (18%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +    ++ A +    PI    +    L               +AV GT GK++
Sbjct: 121 VVCSTAINTTNSEYKAAVELGCPIFHRSDLLAALI---------QDYQSIAVAGTHGKTT 171

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL      PT  I                    L             +
Sbjct: 172 TSSLIGFMLLEAGLD-----PTIVIGGEV--------DAWGGNARLGRSPYLVAEADESD 218

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L  H         G  TN+  DH D++ +          +F+         +   
Sbjct: 219 GSLVKLSAH--------IGVVTNIELDHPDHYDSLDQVV----EIFQVFKENCQNLVGCI 266

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----F 304
           D +  +E ++          S+ ++    +  KV  +H +  VT++   +    L     
Sbjct: 267 DCSTVREKLQ-----PTISYSINFESDAHY--KVDCVHYQSNVTLARVWEKGQILGQLKL 319

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  + NAL A  +   +G++ + +   +        RFE+ G    G     DYAH
Sbjct: 320 RLLGKHNLSNALAAVAVGRLLGLEFSTITSAIALFEGAHRRFEYRG-ECNGIVFVDDYAH 378

Query: 365 TSNSLEMILKNIRTITSGRI-------------------------IVVFGCGGDRDQGKR 399
             + +   L       +  +                         + +F           
Sbjct: 379 HPSEINATLAAANLQKNQELSPKPHISTKKLTLKTQNNSLKIERVVAIFQPHRYSRTQAF 438

Query: 400 PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 + + AD+ IVT+     E      + +++   I         + +     +   
Sbjct: 439 ISEFAQSFNDADMVIVTNIYSAGESSEGQINSQQVAEAISRYHRQVYYRSSLDSVSKFLY 498

Query: 454 EMLNKQDVLVVAGKGHETVHIV 475
           ++L   D+ +    G+    I+
Sbjct: 499 QVLKPGDLAIFLSAGN-LNQII 519


>gi|320172818|gb|EFW48050.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae CDC
           74-1112]
          Length = 491

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSCIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GID   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFLGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|113477459|ref|YP_723520.1| UDP-N-acetylmuramate--L-alanine ligase [Trichodesmium erythraeum
           IMS101]
 gi|110168507|gb|ABG53047.1| UDP-N-acetylmuramate--L-alanine ligase [Trichodesmium erythraeum
           IMS101]
          Length = 556

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 136/442 (30%), Gaps = 80/442 (18%)

Query: 71  IVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +    ++ A +    PI    +    L               +AV GT GK++
Sbjct: 138 VVCSTAINTTNSEYKAAVELGCPIFHRSDLLAALI---------QDYQSIAVAGTHGKTT 188

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL      PT  I                    L             +
Sbjct: 189 TSSLIGFMLLEAGLD-----PTIVIGGEV--------DAWGGNARLGRSPYLVAEADESD 235

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L  H         G  TN+  DH D++ +          +F+         +   
Sbjct: 236 GSLVKLSAH--------IGVVTNIELDHPDHYDSLDQVV----EIFQVFKENCQNLVGCI 283

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----F 304
           D +  +E ++          S+ ++    +  KV  +H +  VT++   +    L     
Sbjct: 284 DCSTVREKLQ-----PTISYSINFESDAHY--KVDCVHYQSNVTLARVWEKGQILGQLKL 336

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  + NAL A  +   +G++ + +   +        RFE+ G    G     DYAH
Sbjct: 337 RLLGKHNLSNALAAVAVGRLLGLEFSTITSAIALFEGAHRRFEYRG-ECNGIVFVDDYAH 395

Query: 365 TSNSLEMILKNIRTITSGRI-------------------------IVVFGCGGDRDQGKR 399
             + +   L       +  +                         + +F           
Sbjct: 396 HPSEINATLAAANLQKNQELSPKPHISTKKLTLKTQNNSLKIERVVAIFQPHRYSRTQAF 455

Query: 400 PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 + + AD+ IVT+     E      + +++   I         + +     +   
Sbjct: 456 ISEFAQSFNDADMVIVTNIYSAGESSEGQINSQQVAEAISRYHRQVYYRSSLDSVSKFLY 515

Query: 454 EMLNKQDVLVVAGKGHETVHIV 475
           ++L   D+ +    G+    I+
Sbjct: 516 QVLKPGDLAIFLSAGN-LNQII 536


>gi|331650988|ref|ZP_08352016.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
 gi|331051442|gb|EGI23491.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
          Length = 491

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 146/439 (33%), Gaps = 59/439 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q +  GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++               
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ R      +  + G+ +   + ++    I  + 
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSEDADVRVEDYQQIGPQG 270

Query: 290 QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             T+  + K+        PG     NA  A  +    GI+   +L  LE       RF+F
Sbjct: 271 HFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGINDEAILRALESFQGTGRRFDF 330

Query: 349 VG------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
           +G       N + G   +  DY H    ++  +K  R       ++++F           
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDL 390

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIE 454
                  L   D  ++ +  P  E P  I       +   I    +I+ I         E
Sbjct: 391 YDDFANVLTQVDTLLMLEVYPAGEAP--IPGADSRSLCRTIRGRGKIDPILVPDPAQVAE 448

Query: 455 MLNK----QDVLVVAGKGH 469
           ML       D+++V G G+
Sbjct: 449 MLAPVLTGNDLILVQGAGN 467


>gi|298207886|ref|YP_003716065.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850527|gb|EAP88395.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 445

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 137/401 (34%), Gaps = 50/401 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ ++ S     +        +  + +V         FAS         I+ +TG++GK+
Sbjct: 64  ADVVMKSPGIPDKAPIIKQLKDNKVAIVSEI-----EFASEFTN---ATIIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V  +   I +  GL++   G    I          +PS  Y+                +
Sbjct: 116 TVTRWTHHILKEGGLNASVGG---NIGDSFAKQVALSPSENYV----------------L 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  LD   +   +      TN+  DH+D +      Y  +K R+   +       +I
Sbjct: 157 ELSSFQLDD--IKNFRPHIAIITNITPDHLDRYDYDFSKYVASKFRI--TMNQTNDDYLI 212

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---L 303
           Y  D  +      AH    +++         +   +       ++ I+++          
Sbjct: 213 YDADNEAINDYLEAHTIQPKLVPFSTTKSLKYGAYIEHN----ELIINIDENKIHMPIDS 268

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA+ ++     + I    + E L     V  R E V   +    I    A
Sbjct: 269 LALKGTHNQKNAMASSSAAKMLKIRKQTIRESLANFQGVEHRLEHVLKINNVNYINDSKA 328

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              N        + +++S  I +V   G D+      +   +   +  I  +  DN    
Sbjct: 329 TNVN---ATFYALESMSSDTIWIV--GGVDKGNDYSQLNALVNEKVKAIICLGVDN---- 379

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +KI     + +   +E  +  EAI+ A ++  + D +++
Sbjct: 380 --QKILKAFNNCVDIMVETQSMSEAIKIAYKIGERGDAVLL 418


>gi|127514072|ref|YP_001095269.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
 gi|126639367|gb|ABO25010.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
          Length = 479

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 122/361 (33%), Gaps = 32/361 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK+S +S +  I +  G +   +     I    Q+  ++           
Sbjct: 126 RWVLAVSGTHGKTSTSSMLAWILEDCGYAPGFL-----IGGVPQNFGVS----------- 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       V  +         R   +  +       NL  DH D     +A       
Sbjct: 170 ARLGDSPFFVVEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNH 229

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +   +  +       A DA  +EV+           +                 +     
Sbjct: 230 VIRTVPGQGKVIWPSASDA-VREVIDM--GCWSEQETYNLMAGSPGWYSELLSEDGHSFE 286

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+    L + L G+  V NA +A      +G+  A  +E L +      R E +GT
Sbjct: 287 LFFDGESQGVLDWSLIGQHNVENATMAIAAARHVGVKPAAAIEALTRFAPPKRRMELIGT 346

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG---GDRDQGKRPIMGKIAL 407
                 +Y D+AH   ++   L+  R  +  GRIIVV         R   K  + G +AL
Sbjct: 347 -VNDIAVYDDFAHHPTAIATTLQGCRAKVGEGRIIVVLEPRSNTMKRGVHKDTLAGSMAL 405

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             AD A +   +    D E   A+    +    +     +++  A       D ++V   
Sbjct: 406 --ADAAYLYQADNIDWDVEAAMAKAELPVTVLYQIDELADSVTAA---ARPGDTIIVMSN 460

Query: 468 G 468
           G
Sbjct: 461 G 461


>gi|300361173|ref|ZP_07057350.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           JV-V03]
 gi|300353792|gb|EFJ69663.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           JV-V03]
          Length = 437

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 128/418 (30%), Gaps = 65/418 (15%)

Query: 75  SAYSLQDF-SATIRSNTPILVV-------DNTRKFLSLFASRLYGKHPENI--------- 117
           +   ++DF  A I+SN   ++V       DN      L  +  +  +P+ +         
Sbjct: 50  AGIEVKDFDPANIKSNDEQVIVKGNAFKQDNPEVAACLDKNVEWQSYPDTVEEIVQMHTS 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+GT GK+S  S +  +      +S+ IG          D+R                
Sbjct: 110 IGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR--GKGVADSRFFVYEAD--------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + Q  Y  A     ++ 
Sbjct: 159 ----------EYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQDDYTRAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G+          +       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFNDTDDFQAVNIEKTTTGSKFNVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD   F   L G+  + N      +     +    + E L        R  F   +   
Sbjct: 255 GKDLGRFEIHLFGDHSILNTTAVIAVAYTEKVPMEDIKEGLLTFKGAKRR--FAEKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R       ++VVF         K     +  L   D A 
Sbjct: 313 VSVIDDYAHHPTEMRATIQAARQKFPDKELVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      + I  +       +K  V+V  G G 
Sbjct: 373 VTPIYASAREASGDISSEDLVKNIPGSEVIDLDNIADLTK-----HKNAVVVFMGAGD 425


>gi|149198597|ref|ZP_01875641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
 gi|149138312|gb|EDM26721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
          Length = 437

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 130/413 (31%), Gaps = 62/413 (15%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP------ILVVDNTRKFLSLFASRLYGKH 113
           I Q I +GA  +  S  Y+    +  +                 +  F+           
Sbjct: 50  IQQLIEEGA--VFCSLPYTQAFENCVMSPGINPKSELYQAAKKASVNFMGELDFAAKFMP 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               LA+TGT+GK++     Q   +     +   G                     L  A
Sbjct: 108 QTKFLAITGTNGKTTCTEMTQHTLKNLDYEAVACGNIG------------------LPLA 149

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              L         VE SS+ +D   L  +K  A    N+  DH+D + T   Y ++K+ +
Sbjct: 150 EVALRDNQPDFAVVEISSYQIDL--LSSLKFDAAIILNVSEDHMDRYGTFDKYLDSKLMI 207

Query: 234 --FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   L  +        D                V S+G +   + + +    +  Q++
Sbjct: 208 RKFCHFLAVQQDVECAQADM---------------VFSIGDEKADLMIGEELFQYRDQKI 252

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +          F   G+  + NAL    L  +  ID    L  +        R E   T
Sbjct: 253 PL--------PKFSFYGKHNLENALGVLALLNSQKIDLQKSLLAMSDFTCSEHRLEDFAT 304

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 +    +    SL + L+        + IV+   G D++     +   I+     
Sbjct: 305 YQNVLYVNDSKSTNPASLMVALETFAD--KNKKIVLIAGGRDKNMDLSVVNPLISK---- 358

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              V +     E  E ++A + H +       +   A+  AI    + DV+++
Sbjct: 359 --YVKEVFSYGECKENLKA-LWHTLCLTNLCADFEGAVLEAISCAKEGDVVLL 408


>gi|209693951|ref|YP_002261879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Aliivibrio salmonicida LFI1238]
 gi|208007902|emb|CAQ78032.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Aliivibrio salmonicida LFI1238]
          Length = 453

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 114/359 (31%), Gaps = 27/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ +S +  + +  G     +     + +F             L +
Sbjct: 101 QDRWVLAVAGTHGKTTTSSMLAWVLEECGYKPGFL-VGGVLGNF--------GESARLGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +R            NL  DH D      A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHYR-----PRTLVLNNLEFDHADIFDDLAAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P          D    EV+++       +   G +G++   K      +  Q  
Sbjct: 207 LI-RTVPSSGRIFAPKQDKPLAEVLEQ--GCWSEIEFTGEEGEWKASK---LKKDGSQFD 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +    ++     + L G+  V NAL+       +G+   L  E L        R EF G 
Sbjct: 261 VYFNDENVGQVNWNLVGDHNVSNALMVVASARHVGVTPDLACEALGSFINTKRRLEFKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++++ L  +R       I+            G        +L  
Sbjct: 320 EVNGVTVYDDFAHHPTAIDLTLSGLRNKVGDNKIIAVLEPRSSTMKLGVHKDTLAGSLHA 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +  S   + +  + +       E    ++ I   +    + D ++V   G
Sbjct: 380 ADSVYLFQPDNISWSVDDVAKQCVQPAYTHHEINAFVDMI---VAEAKEGDQILVMSNG 435


>gi|171778709|ref|ZP_02919805.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282666|gb|EDT48090.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 451

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 134/427 (31%), Gaps = 58/427 (13%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G   D +      + +G + I  S    L D +  +    P +  DN      + A  + 
Sbjct: 40  GKPFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNP-----MVARAIE 94

Query: 111 GKHP-------------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
              P               I+ +TG++GK++  + + +     G S    G    I   A
Sbjct: 95  KNIPVITEVELAYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKSGLLSG---NIGFPA 151

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +   T      L   LS     G                  D         TNL   HI
Sbjct: 152 SEVAQTATDKDTLVMELSSFQLMG-----------------TDTFHPHMAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH   + Y  AK  + + +  ++   + +  D   +   K A        +    G ++
Sbjct: 195 DYHGGFEEYVAAKWNIQKNMTAEDYLVLNFNQDLAKELAQKTAAQVIPFSTTEKVDGAYL 254

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                        +    E         +PG   V NAL    +    GI +  + E L 
Sbjct: 255 D---------GDTLYFKDEAIMKASEIGVPGNHNVENALATIAIAKLSGIANEAIKETLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R + +G    G + Y D   T+  +    K +        +++   G DR   
Sbjct: 306 HFGGVKHRLQALG-EVNGIKFYNDSKSTN--ILATQKALSGF-DNSKVILIAGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I      + I+ +  PR      ++         +++  +  +A R A     
Sbjct: 362 FDELVPDITGVKL-MVILGESAPR------VKRAADKAQVPYVDAKDVADAARIAYSKAE 414

Query: 458 KQDVLVV 464
             DV+++
Sbjct: 415 AGDVVLL 421


>gi|15616833|ref|NP_240045.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681586|ref|YP_002467972.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471272|ref|ZP_05635271.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133466|sp|P57310|MURC_BUCAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765987|sp|B8D913|MURC_BUCA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293621|pir||C84955 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) [imported] -
           Buchnera sp. (strain APS)
 gi|10038896|dbj|BAB12931.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219624429|gb|ACL30584.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 484

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 161/452 (35%), Gaps = 56/452 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           I + I  GA   +  S  ++++      S+ I SN   ++    R    L  + +     
Sbjct: 56  IKKLINLGATIYLQHSEKNIKNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILM 115

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
                +AV+GT GK++  S +  I   SGL    I  G   +I+S+A+    +       
Sbjct: 116 SFKKGIAVSGTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSSSYFITEAD 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L                        +       TN+  DHID++          
Sbjct: 176 ESDASFL-----------------------YLNPNIIIVTNIEPDHIDHYDNSFKKLKQT 212

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
             +F + +     AI+  D+    +++    N  C++++ G+ +   + +      +   
Sbjct: 213 FLIFLKKITLYGTAIVCIDNNAICDIL---TNLKCKIITYGFNKNADVRIFLYKQNNFIG 269

Query: 290 QVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              I +   K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF
Sbjct: 270 HFYIILKNNKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMIASLKNFQGTCRRFEF 329

Query: 349 VG--------TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
           +G               +  DY H    L   +K IR +  +  +I++F           
Sbjct: 330 LGFLSIDQGFDKRANCMLIDDYGHHPTELSETIKTIRISWPNKNLIMIFQPHRYTRTYNL 389

Query: 400 PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTA 452
                  L   D+ ++      +E      D   +  +I      ++    N    + T 
Sbjct: 390 YHDFVQTLSQVDVLLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTL 449

Query: 453 IEMLNKQDVLVVAGKGHETVH---IVTNGEKK 481
           I+ L   D++++ G G+       I+    KK
Sbjct: 450 IQTLQGNDIILIQGAGNIDTIAHKILIKKTKK 481


>gi|167040634|ref|YP_001663619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter sp. X514]
 gi|300914675|ref|ZP_07131991.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307724091|ref|YP_003903842.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
 gi|226722952|sp|B0K3H2|MURD_THEPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166854874|gb|ABY93283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           sp. X514]
 gi|300889610|gb|EFK84756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307581152|gb|ADN54551.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
          Length = 454

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 116/321 (36%), Gaps = 26/321 (8%)

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           S +    ++          +   L Y   +      + A         +   K       
Sbjct: 124 SLLGEMFKNTGRKVYVAGNIGYPLIYAVMEAAEDDFIVAEISSFQLETIKEFKPKISCII 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H+T + Y + K R+FE    ++   ++  DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLDRHKTFENYRDIKGRIFENQ-REDEYTVLNYDDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIG 326
             +     L +  A      + ISV G     +      +PGE  + NAL A+ +    G
Sbjct: 240 SRKS----LLENGAYIKDGSIYISVNGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ +     IV
Sbjct: 296 ISADVIANTLKTFKGVEHRIEFVD-EINGVKFYNDSKGTNP--DASIKAIQAL--KTPIV 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443
           +   G D+       +      +  + ++       +  +KIR             +  G
Sbjct: 351 LIAGGYDKGSEFDEFVKAFNGKVKKLILI------GQTAKKIRDTARKYSYPEDDILFAG 404

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
              EA++ A E   + D +++
Sbjct: 405 TLEEAVKKAYESAKEGDSVLL 425


>gi|319776620|ref|YP_004139108.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
 gi|317451211|emb|CBY87444.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
          Length = 475

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 126/376 (33%), Gaps = 40/376 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA      +  A+ +   P++      +   + A  +  +H
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I  ++ L    +      S+          +  YL   
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D ++       A    
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +             Q  +                I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFI 334

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +   R+  DY H    + + +K  R      RI+++F                  L  
Sbjct: 335 RPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGESP 410


>gi|319761497|ref|YP_004125434.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
 gi|317116058|gb|ADU98546.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
          Length = 863

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 122/359 (33%), Gaps = 32/359 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +    G  +     T+T   +    ++ +        A + L+        +E + 
Sbjct: 487 LIAHLFTAHGWRTAM---TNTDGVYVNGRQIDSGDCSGPRSARNALAHPEADAAVLECAR 543

Query: 192 HGLDQHRLDGIKLIAGSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            GL +  L   +      TN+G  DH+   +  T +     K R+  + + ++  A++ A
Sbjct: 544 GGLLREGLGFDRCQVAVVTNVGEGDHLGLNFIHTVEDVAVLK-RVIVQNVAQDGYAVLNA 602

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEG------ 297
            D +   V   A +   +V+                +    ++  +   ++ EG      
Sbjct: 603 ADPH---VAAMATSCPGKVIFFAADRHHPVMATHRAQGNRVVYVDEGHIVAAEGSWRESV 659

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNS 353
             ++          FQV NA+ A     A+G+    +   L             F   + 
Sbjct: 660 PLREIPITRGGAIGFQVENAMAAIAATWALGLPWQTIRRGLAGFVNDSDNAPGRFNVMDY 719

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  +  DY H  +++  +++ +  I + +  VV    GDR         +      D  
Sbjct: 720 RGATLIADYGHNPDAIRALVQAVDAIPARQRSVVISGAGDRRDQDIVEQTRTLGAAFDDV 779

Query: 414 IVTDD-NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           ++  D   R     ++ A +  G+ G        E      AI  A+E L   D+ +V 
Sbjct: 780 VLYQDACQRGRADGEVLALLKQGLEGAPRTRYVTEIHGEFVAIDHALERLQPGDLCLVL 838


>gi|332877758|ref|ZP_08445499.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684338|gb|EGJ57194.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 449

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 116/367 (31%), Gaps = 47/367 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V + A                 VV  + + L               LAV GT GK++ +
Sbjct: 75  VVYTPAIPKDHSELLYFQQNGYEVVKRS-EVLGFI------TQNSFCLAVAGTHGKTTTS 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I   SG         +++S+F         S          L   G  +   EA 
Sbjct: 128 SILAHILVESG---------ASVSAFLGGIAENFNS---------NLVLHGNEYTVAEAD 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                  RL          T++  DH+D +  +Q         F   + +    I+    
Sbjct: 170 EFDRSFLRLS---PNIACITSMDADHLDIYGDEQHLIEG-FHQFAGKIKEGGSLIVRNGL 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
           A + E             + G +       + +  +          +G  + D+ F  PG
Sbjct: 226 AIAGE-------------TFGLEDDSDYSFQHIRIVDGVYHFDFKYKGGIYKDYTFLKPG 272

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A  + I  G     +L HL     V  RF ++    +      DYAH  + 
Sbjct: 273 RHNLLNALAAVSMAIKAGFAPEALLPHLATFKGVKRRFSYI-IKEKNRVFIDDYAHHPSE 331

Query: 369 LEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-E 426
           +  + + +  +       ++F                 +L   D  I+ D  P  E P E
Sbjct: 332 INALYQAVSEMYPNTPKTIIFQPHLFSRTRDFMDDFAKSLSQFDEVILLDIYPARELPIE 391

Query: 427 KIRAEII 433
            I +E++
Sbjct: 392 GITSEVL 398


>gi|253997650|ref|YP_003049714.1| UDP-N-acetylmuramate [Methylotenera mobilis JLW8]
 gi|253984329|gb|ACT49187.1| UDP-N-acetylmuramate [Methylotenera mobilis JLW8]
          Length = 463

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 121/359 (33%), Gaps = 20/359 (5%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             + +LAV GT GK++ +S +  I + +GL+   +     I    ++  ++   P    +
Sbjct: 101 QGKWVLAVAGTHGKTTTSSMLAWILEYAGLAPGFL-----IGGVPENFSVSARLPQVPVQ 155

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +S   V       ++    + +    +       NL  DH D  +   A       
Sbjct: 156 DKNSVSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFEDLSAIEKQFHH 215

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P++   +    +   + V+ +       V   G    +                
Sbjct: 216 LV-RTVPQQGLVVANGKETSLQRVLDK--GCWTPVDKFGTDDDWQATNA----QGDGSFD 268

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L GE    NAL +       G+   + +  L +   V  R E  G 
Sbjct: 269 VIYKGQMQGHVAWGLLGEHNRMNALASIAAARHAGVAVDVSIAALTEFKNVKRRMEVRG- 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDL 409
            SRG  +Y D+AH   ++E  +  +R       I+              +      +L  
Sbjct: 328 ESRGVVVYDDFAHHPTAIETTIAGLRAKVGAARILAVLEPRSNTMKLGVMKNALPASLAQ 387

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD+      N    D     A I H      +    I+AI+ A+      D +++   G
Sbjct: 388 ADLVFCYQANLGW-DAGAALASIAHKTQVHDDLAQLIQAIKQAV---VAGDHVLIMSNG 442


>gi|227878134|ref|ZP_03996113.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           JV-V01]
 gi|256850137|ref|ZP_05555567.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-1A-US]
 gi|262047700|ref|ZP_06020653.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-3A-US]
 gi|227862261|gb|EEJ69801.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           JV-V01]
 gi|256713109|gb|EEU28100.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-1A-US]
 gi|260571985|gb|EEX28552.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-3A-US]
          Length = 437

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 111/358 (31%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++GT GK+S  S +  +      +S+ IG          D+R                
Sbjct: 110 IGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGR--GKGVADSRFFVYEAD--------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 159 ----------EYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G++         +       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFKDTDDFQAVDIKKSTTGSKFHVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD  +F   L G+  + N+     +     +    + E +        RF     +   
Sbjct: 255 GKDLGEFEIHLFGDHSILNSTAVIAVAYTEKVPMDDIREGMLTFKGAKRRFS--EKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R      +++VVF         K     +  L   D A 
Sbjct: 313 IAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   +++  IPG      + I  +       NK  V+V  G G 
Sbjct: 373 VTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTK-----NKNSVIVFMGAGD 425


>gi|29653494|ref|NP_819186.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 493]
 gi|154707034|ref|YP_001425281.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161830659|ref|YP_001596104.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 331]
 gi|44888196|sp|Q83F17|MURC_COXBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029010|sp|A9KER2|MURC_COXBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029011|sp|A9NA45|MURC_COXBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29540756|gb|AAO89700.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 493]
 gi|154356320|gb|ABS77782.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161762526|gb|ABX78168.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 331]
          Length = 465

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 136/434 (31%), Gaps = 57/434 (13%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
             DG      AI Q A+  V SSA      +  A  ++  P+L      K   + A+ + 
Sbjct: 59  NHDG-----TAITQ-ADCAVYSSAIGATNPELMAAKQAKIPLL------KRGEMLANLMK 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  +AV G  GK++ +  +      +    +F +G    +++     R+       
Sbjct: 107 EYQS---IAVAGAHGKTTTSGMLSHAFVEANLDPTFMVG--GVLNNSQTPARVGNG---- 157

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               ++       + + +                      TN+  DH+  +         
Sbjct: 158 -HYFIAEADESDASFLFM---------------HPDIAVVTNIDADHLSTYDGDFNRLKQ 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNK 288
               F E   ++   ++  DD   +E+         RV++ G+     + +   C    +
Sbjct: 202 TYIQFLEQTAQDGVVVLCLDDPILREIAPLLSR---RVITYGFSSDAQYRVVDYCQQGIQ 258

Query: 289 QQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               I    +         +PG+    NA     +   + ++   +L+ L     V  RF
Sbjct: 259 SLFQIHSPQRKAPLTVKLSMPGQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRF 318

Query: 347 EFVGT---NSRGGRIYVDYAHTSNSLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
              G          I  DY H  N ++  +          R+++VF              
Sbjct: 319 TIRGEMILPKGNALIIEDYGHHPNEIKATLAAARAAWPERRMVLVFQPHRYSRTRDLMTE 378

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEM 455
               L   D  ++ +     E P        +   + +G+         ++ +  T  ++
Sbjct: 379 FVSVLAETDWLVLLEVYSAGEMPIPGADGMALIKMMSNGMAQKTTFVPLLQNLPETLQKL 438

Query: 456 LNKQDVLVVAGKGH 469
               D++++ G G+
Sbjct: 439 SQPNDIIILQGAGN 452


>gi|89100115|ref|ZP_01172984.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911]
 gi|89085205|gb|EAR64337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911]
          Length = 431

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 137/408 (33%), Gaps = 61/408 (14%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +AY    ++    ++   PI+      +FL  F  +         +AVTG  GK+S
Sbjct: 64  VIAGNAYPDTHEEIQEAMKLGLPIV---RYHRFLGDFMKKF------TSVAVTGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + + +  +SF IG  +                                +   E
Sbjct: 115 TTGLLAHVMKGAKPTSFLIGDGTGRG------------------------DADAEYFVFE 150

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIY 247
           A      +H L          TN+  DH DY       F+A    F+E+  +        
Sbjct: 151 ACE--YRRHFLSYF-PDYAIMTNIDFDHPDYFANIDDVFSA----FQEMSWQVNKGIFAC 203

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPL 306
            DD   +++  +           G +  F   + V          + V    +D F  P 
Sbjct: 204 GDDEQLQKIQAKVP---VLFYGFGEENDFQ-ARNVIKSTEGTTFDVFVRNTFYDTFSIPQ 259

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V N+L    LC    IDS +V + L     V  RF      S+   I  DYAH  
Sbjct: 260 FGDHNVLNSLAVIALCHYEEIDSEIVKDLLLTFEGVKRRFSEKKVASQ--VIIDDYAHHP 317

Query: 367 NSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSED 424
             +   ++  R       I+ VF                 +L+ AD   + D      E+
Sbjct: 318 TEIRATVEAARQKYPEKEIVAVFQPHTFTRTQTFLDDFAESLNKADKVYLCDIFGSAREN 377

Query: 425 PEKI-RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             K+   ++   IP    +++ +      +A++  ++  V++  G G 
Sbjct: 378 HGKLTITDLQDRIPSSEIMKEED-----TSALKQ-HENSVILFMGAGD 419


>gi|322807843|emb|CBZ05418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum H04402 065]
          Length = 458

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 124/362 (34%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T                
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  + E+   A         +G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNN-LLVLNKDDDLTNEMENEA---------LGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++++GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTIQGKEVCDSKDINLKGRHNIANLLAAFCMVNKY-VSIDSMKYVAINFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+     G + Y D   +S S     + +  + S    V+   GG   +     + +  
Sbjct: 319 EFI-REVNGVKYYNDSIASSPS-----RTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQD 460
            D   I I+  D        KI++     I         +   +  EA++ A  M  K D
Sbjct: 373 YDKIKILILMGD-----TKNKIKSAFEKVISHKKCEMEIVTVNSMEEAVKVADNMAEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|325980953|ref|YP_004293355.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
 gi|325530472|gb|ADZ25193.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
          Length = 471

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 141/404 (34%), Gaps = 44/404 (10%)

Query: 67  GAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTG 122
           G E I +S    + D      IR   P++        L LF+  L         +LA+TG
Sbjct: 67  GIEMIAISPGVPVADPFVQQAIRLGIPVI------GDLVLFSWALEQNKLQKPKVLAITG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++V S V  + ++SG      G    I     +  +         +A         
Sbjct: 121 SNGKTTVTSMVGAMLRKSGWDVAVAG---NIGPAILNVLMEQVDAGNWPQA--------- 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L+      +     +  N+  DH+D +   Q Y  AK+++F        
Sbjct: 169 --WVLETSSFQLE--TTHNLNADVATVLNVSEDHLDRYTCMQDYIAAKLKIFLRENGSVC 224

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+  +D+   E+      A  + ++ G+              +   + +         
Sbjct: 225 TQILNRNDSGISEMAL----ADGKQITFGWDIPPTDA-DFGIQRDGDDLWLMEGPHRLMK 279

Query: 303 LFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
              L         NAL A  +C A+ I    ++  L +   +P R E V   +  G  + 
Sbjct: 280 TSELVVNGLHNAVNALAALAMCRALDIPMNPLVSALREFRGLPHRMEKVA--AFNGVTFF 337

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D + ++N +   +  +  +     +++   G  + Q    +   +A +   + ++     
Sbjct: 338 DDSKSTN-VGATIAALNGMKQN--VILIAGGDGKGQDFSHLRQTVAENTRAVVLI----- 389

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              D   I  E+              EA++ +  +    DV+++
Sbjct: 390 -GRDAGIIADELKDCGVPVHFATTMEEAMQKSFLLAQAGDVVLL 432


>gi|261392542|emb|CAX50097.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria meningitidis
           8013]
          Length = 458

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 124/370 (33%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   I        ++ + +       V   G +    H  +V
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQV 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL        +G+D     E L     
Sbjct: 261 GEVNADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                 +L  AD            D +   AE +  + G +  G   +A +   ++    
Sbjct: 380 KAALPASLKEADQVFC---YAGGADWD--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|255692973|ref|ZP_05416648.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides finegoldii DSM
           17565]
 gi|260621286|gb|EEX44157.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides finegoldii DSM
           17565]
          Length = 460

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 121/370 (32%), Gaps = 49/370 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T    DH+D + T+ AY  +   
Sbjct: 155 --NLLLSQKSPYTVIEADEFDRSFHWLS---PFMSVITATDPDHLDIYGTEAAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGVPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--------- 461
           D  I+ D  P  E P       I G+   +   N    I     M  K+D+         
Sbjct: 383 DEVILVDIYPAREAP-------IPGVTSRLIYDNLRPGIEK--SMCKKEDILNILKDKNI 433

Query: 462 -LVV-AGKGH 469
            +++  G G 
Sbjct: 434 EVLITLGAGD 443


>gi|254510884|ref|ZP_05122951.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
 gi|221534595|gb|EEE37583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
          Length = 469

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 153/437 (35%), Gaps = 52/437 (11%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTG 122
            A++VS      Y + +          + V ++   F   FA         P  ++AVTG
Sbjct: 73  AALIVSPGIPHLYPVPNPVVAAALEAGVPVDNDIGLFFRSFAGPEWHNYDTPPRVIAVTG 132

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ A+ +  I   +G S+   G                         L        
Sbjct: 133 SNGKSTTAALIHHILTEAGRSAQLAGNIG-------------------RGVLDIDPGGDG 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           + V +E SS+  +  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 174 SVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRA 231

Query: 243 PAIIYADDAYSKEVMKRAHN--AGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVE 296
              I  D+A    +  +     +  RV+ V       G    +       ++ +      
Sbjct: 232 VIGI--DEAEGAFLAGQLAEGPSDDRVIRVSVARKLTGPGWQVFARKGFLSEYRKGRQAG 289

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D   +  LPG     NA  A   C A+G+   ++ + L     +P R + +     GG
Sbjct: 290 AIDLRDIRGLPGAHNHQNACAAYAACRALGLAPRVIEDALHNFPGLPHRSQIIAEA--GG 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             YV+ +  +N ++  LK +      R I     G +++ G   + G  A D    A V 
Sbjct: 348 VTYVNDSKATN-VDSALKALNAFGKIRWIC---GGLEKEGGLDALNG--ARDHVVKAYVI 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
                  +      ++               A+  A+      +V+++A     +     
Sbjct: 402 -----GREAAGFAMQLEA---EAQVCTTMSAAVEQAMADAQPGEVVLLA-PAAASFDQYD 452

Query: 477 NGEKKMSVDCDIIREIL 493
           N EK+       +++ L
Sbjct: 453 NFEKRGDDFAAEVKKRL 469


>gi|329944581|ref|ZP_08292721.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328530134|gb|EGF57017.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 525

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 146/441 (33%), Gaps = 72/441 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS+A    +            V+  + + L+L A  L      + +AV G  GK++ +
Sbjct: 89  VVVSTAIKETNPELAEARRRGQEVIHRS-QALALAAQGL------DFVAVAGAHGKTTTS 141

Query: 131 SFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + +    +G   S    G    + + A            L    + ++    +  S  
Sbjct: 142 GMLAEALTDAGADPSFAIGGVVRALGTGAH-----------LGSGSTLVAEADESDRSFL 190

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             +                  TN+  DH+D + T +A+  A    F   L      +  A
Sbjct: 191 NYT------------PRVEIVTNVEPDHLDTYGTTEAFEAA-FVDFAHRLVPGGLLVACA 237

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--------- 299
            D  S  + + A   G RV++  +                  + I   G           
Sbjct: 238 ADPGSLRLAQSAAAEGLRVVTYSFDRPDTLPGGRLVGEGHVHLNIRERGASSTRALLTLT 297

Query: 300 --------------------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                                + +  +PG+    +A  A    I +G++ A +   L   
Sbjct: 298 RAADREQSGGVAAGAPAQSQVELVLAVPGDHVALDAAGAWAAGIEVGVEPAEMARALGSF 357

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQ 396
                RFE  G  + G R+  DYAH    +E +L   R +     GR++V+F        
Sbjct: 358 GGTGRRFEDRG-QAHGVRVIDDYAHHPTEIEALLHTAREVAQERRGRVLVLFQPHLFSRT 416

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAE-IIHGIPG--FIEKGNRIEAIR 450
                    AL LAD+ +V D  P  E   D   I  E +   +PG   +   +R +A  
Sbjct: 417 RTFADRFGQALALADVVVVADVYPARENQADFPDITGETVAQRVPGDRAVFVADRQDAAH 476

Query: 451 TAIEMLNKQDVLVVAGKGHET 471
           T        D+L+  G G  T
Sbjct: 477 TLAAQARPGDLLLTVGAGDVT 497


>gi|242238101|ref|YP_002986282.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya dadantii Ech703]
 gi|242130158|gb|ACS84460.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech703]
          Length = 486

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 150/446 (33%), Gaps = 60/446 (13%)

Query: 56  GHLFIPQAIAQ-----GAEAIVVSSAYSLQDFSATIRS-----NTPILVVD-NTR----K 100
           G    P A+ Q     GA         ++ D S  + S     + P ++   + R    +
Sbjct: 48  GSDLAPNAVTQQLTELGARIYFNHRPENVNDASVVVVSSAISLDNPEILAAHDARIPVIR 107

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
              + A  +  +H    +A+ GT GK++  + V  I   +GL    +      ++     
Sbjct: 108 RAEMLAELMRFRHG---IAIAGTHGKTTTTAIVTSIYAEAGLDPTFVNGGLVKAAGTH-- 162

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                S  YL   ++       + +                ++ +    TN+  DH+D +
Sbjct: 163 -ARLGSSRYL---IAEADESDASFL---------------HLQPMVAIVTNIEADHMDTY 203

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHL 279
           Q            F   LP    A++  DD   +E++ R       + + G+     + +
Sbjct: 204 QGDFENLKQTFINFLHNLPFYGHAVMCLDDPVIRELLPRVGR---HITTYGFSDDADVRV 260

Query: 280 KKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                +  +   T++ +GK   +     PG     NA  A  +    GI+   +L  LE+
Sbjct: 261 ADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNAAAAVAVATEEGIEDDAILRALER 320

Query: 339 LHVVPGRFEFVG------TNSRGGRI--YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG 389
                 RF+F+G       N + G +    DY H    ++  +K  R      R++++F 
Sbjct: 321 FQGTGRRFDFLGEFPLEPVNGKSGAVMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQ 380

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEK 442
                            L   D+ ++ D  P  E P        +   I   G    I  
Sbjct: 381 PHRYTRTRDLYDDFAHVLSQVDVLLMLDVYPAGEAPIPGADSRSLCRTIRGRGKIDPIMV 440

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +         + L   D+++  G G
Sbjct: 441 PDVENLPELLAQALQNGDLVLAQGAG 466


>gi|260172408|ref|ZP_05758820.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides sp. D2]
 gi|315920704|ref|ZP_07916944.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694579|gb|EFS31414.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 458

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 127/367 (34%), Gaps = 43/367 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T+   DH+D + T+QAY  +   
Sbjct: 155 --NLLLSQASPYTVIEADEFDRSFHWLS---PYMTVITSTDPDHLDIYGTEQAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKLK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D  I+ D  P  E P      + I   +  GI   + K    E I   + +L  +++ ++
Sbjct: 383 DEVILVDIYPAREAPIPGVTSKLIYDNLRPGIEKSMCK---KEEI---LNILKDKNIEVL 436

Query: 464 V-AGKGH 469
           +  G G 
Sbjct: 437 ITLGAGD 443


>gi|238855721|ref|ZP_04646017.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3]
 gi|260665507|ref|ZP_05866354.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934756|ref|ZP_06339996.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|238831667|gb|EEQ24008.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3]
 gi|260560775|gb|EEX26752.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301167|gb|EFA93471.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
          Length = 435

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 122/393 (31%), Gaps = 58/393 (14%)

Query: 96  DNTRKFLSLFASRLYGKHPENI---------LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +N     +L        +P+ +         + ++G  GK+S  + +  +   +  +S+ 
Sbjct: 77  ENPEVAAALEMKVPMHSYPDTVEEIIQQYTSIGISGAHGKTSTTALLSHVLTEAAPTSYL 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           IG         +D+R                          E   H L  H         
Sbjct: 137 IGDGE--GRGVKDSRFFVYEAD-------------------EYRRHFLAYH------PDY 169

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH DY +      +A     ++    +    ++ DD   +++  +       
Sbjct: 170 QIMTNIDFDHPDYFKDINDTQSAFQSAADQ---TKKALFVWGDDPRLQKIETKIPK---- 222

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA 324
             + G+          V    +    ++   GK+  +F   L G+  + N+L   G+ + 
Sbjct: 223 -YTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKTHLFGDHNIMNSLAVIGVALT 281

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGR 383
             +    + + L        RF     +     +  DYAH    +   ++  +    + +
Sbjct: 282 EEVPMEDIQKGLLTYGGAKRRFS--EKDFGDITVIDDYAHHPTEMRATIQAAKQKFPNKK 339

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIPGFIE 441
           ++VVF         +        L   D A +T       E    I   ++   IPG   
Sbjct: 340 LVVVFQPHTYSRTKEFASEFIEILRGVDKAYITPIFGSAREKSGDISSEDLTSQIPGSEV 399

Query: 442 KGNRIEAIRTAIEMLN-KQDVLVVAGKGH-ETV 472
                  I    ++   +  V+V  G G  E  
Sbjct: 400 ID-----IANIADLTKNRNSVVVFMGAGDIEKY 427


>gi|167037226|ref|YP_001664804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115645|ref|YP_004185804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226722951|sp|B0K8K5|MURD_THEP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166856060|gb|ABY94468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928736|gb|ADV79421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 454

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 116/321 (36%), Gaps = 26/321 (8%)

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           S +    ++          +   L Y   +      + A         +   K       
Sbjct: 124 SLLGEMFKNTGRKVYVAGNIGYPLIYAVMEAAEGDFIVAEISSFQLETIKEFKPKISCII 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H+T + Y + K R+FE    ++   ++  DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLDRHKTFENYRDIKGRIFENQ-REDEYTVLNYDDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIG 326
             +     L +  A      + ISV G     +      +PGE  + NAL A+ +    G
Sbjct: 240 SRKS----LLENGAYIKDGSIYISVNGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ +     IV
Sbjct: 296 ISADVIANTLKTFKGVEHRIEFVD-EINGVKFYNDSKGTNP--DASIKAIQAL--KTPIV 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443
           +   G D+       +      +  + ++       +  +KIR             +  G
Sbjct: 351 LIAGGYDKGSEFDEFVKAFNGKVKKLILI------GQTAKKIRDTARKYSYPEDDILFAG 404

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
              EA++ A E   + D +++
Sbjct: 405 TLEEAVKKAYESAKEGDSVLL 425


>gi|257465205|ref|ZP_05629576.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
 gi|257450865|gb|EEV24908.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
          Length = 475

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 147/446 (32%), Gaps = 63/446 (14%)

Query: 56  GHLFIPQAIAQ-------------------GAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           G      A+ Q                   GA  +V SSA    +          I V+ 
Sbjct: 47  GSDIADSAVTQRLAKAGAKICIGHQAENIEGASVVVASSAIDESNPEVAAAKEARIPVI- 105

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
              +   + A  +  +H    +A+ GT GK++  + +  I   + L    +      S+ 
Sbjct: 106 ---QRAQMLAEIMRFRHG---IAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSAG 159

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                    +  YL   ++       + +                ++ +    TN+  DH
Sbjct: 160 ---KNAHLGASRYL---IAEADESDASFL---------------HLQPMVSVVTNIEPDH 198

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGK 275
           +D +             F   LP    A++ ADD     VM+ A   G +V+S G+ +  
Sbjct: 199 MDTYGGDFEKMKETYVRFLRNLPFYGLAVMCADDET---VMEIAPKVGRQVISYGFSEKA 255

Query: 276 FIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              ++       +   T+    G+  + L  +PG     NA  A  +    GI +  +L 
Sbjct: 256 DYRIEDYQQTGFQGHYTVVCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILA 315

Query: 335 HLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
            L        RF+ +G+    +    +  DY H    +++ +K  R    + R+++VF  
Sbjct: 316 ALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQP 375

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKG 443
                           L   D  I+ +     E P      + +   I   G    I   
Sbjct: 376 HRYSRTRDLFDDFVQVLSQVDALIMLNVYAAGEAPIVGAESKDLCRSIRTLGKVDPILVS 435

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +  +      +++   D+++  G G+
Sbjct: 436 DTSQLGEVLDQIIQDGDLILAQGAGN 461


>gi|300774248|ref|ZP_07084115.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300758927|gb|EFK55756.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 452

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +AV GT GK++ ++ +  I + SG      +G  S  S++  +      +         
Sbjct: 115 TIAVAGTHGKTTTSTMIAHILKDSGYDCSAFLGGIS--SNYDSNVLFGANNT-------- 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V   + E     L  H            T+   DH+D +   +++      LF 
Sbjct: 165 ------VVVEADEYDRSFLTLH------PNIAVVTSADADHLDIYGD-ESHLIESFSLFL 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-IS 294
           + + +               ++K       ++   G     ++ + +     +     + 
Sbjct: 212 DRVVEGGT-----------RIVKTGLPFKGQISYSGKGEGDVYAENIHVRDGEFYFDYVH 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +GK  D    +PG   V NA+ A      + I  A +++ L     V  RFE+V  N +
Sbjct: 261 HDGKISDIHLGIPGIHNVENAVAAITAARLLSIADAKIVKALSTFKGVKRRFEYVVRNPQ 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    L   + ++R    + ++ V+F                  L +AD  
Sbjct: 321 TIYI-DDYAHHPEELRAFISSMRKLYPAKKLTVIFQPHLFSRTRDFVDGFAEVLAMADEL 379

Query: 414 IVTDDNPRSEDP 425
           ++ +  P  E P
Sbjct: 380 LLMEIYPARELP 391


>gi|327313069|ref|YP_004328506.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola F0289]
 gi|326946343|gb|AEA22228.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola F0289]
          Length = 458

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 127/361 (35%), Gaps = 41/361 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ ++    I  +S L          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHLDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S     V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSGRSDFVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K    I+     +    MK+    G +V          H + V               
Sbjct: 214 IQKGGALIL-----HKGLEMKQHVQEGVKVYEYSRNDGDFHAENVRIADGAITFDFISPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++  D     P    + N + A  +    G  +  +   ++    V  RF+F   NSR  
Sbjct: 269 ENVKDVELGQPIPINIENGIAAMAMAQLNGCTADELRRGMKTYGGVDRRFDFKIKNSRH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DYAH    +    K+++ +   R + V+F                 AL   D  I+
Sbjct: 328 VFLSDYAHHPKEILQSAKSLKELYPDRKVTVIFQPHLYSRTRDFYKDFASALSHFDEVIL 387

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T+  P  E+P        I   +  G+    I+K + ++ +R         DVLVV G G
Sbjct: 388 TEIYPAREEPIPGVTSSLIYDNLRPGVEKQMIKKDDVLDFVR-----SRDFDVLVVLGAG 442

Query: 469 H 469
           +
Sbjct: 443 N 443


>gi|218282555|ref|ZP_03488805.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
 gi|218216542|gb|EEC90080.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
          Length = 440

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 140/396 (35%), Gaps = 51/396 (12%)

Query: 74  SSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
              Y+    +  I    P +   V+   K  +            +  AVTGT GK++V +
Sbjct: 59  EKKYAFIVKNPGIPYRVPFVHYFVEQNAKIYTEIEVAYRYAKNFDYAAVTGTDGKTTVTT 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + ++  R   S         I +   +  L      Y              +V++E S+
Sbjct: 119 LLFEMLNRQKKSL----VAGNIGTPLCELALEYTDTNY--------------NVALELSN 160

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L    ++  +    + TNL  DH+DY  + +AYF +KMR++E     +   I   DD 
Sbjct: 161 FQLL--GIETFRPHVSTVTNLAPDHLDYMDSLEAYFESKMRIYEN-TNADDYFIRNVDDE 217

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               V+K A N  C V+    + K + L K     + K      +          + GEF
Sbjct: 218 ---NVVKYAQNIPCHVIDFSLKRKDVDLYKDDQYAYYKDTQLFKLSD------LKIVGEF 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NA++A+ +   +G+    + E + +   V  R E+V T     R Y D   T+    
Sbjct: 269 NCGNAMMASCMAYLMGVSLFNIQEVIREFSGVEHRIEYVDTIDN-VRFYNDSKATNT--- 324

Query: 371 MILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
                   +++    V+  C G D+      +    A+    I+             + +
Sbjct: 325 --HAACAGLSAFEKNVILLCGGKDKHISFDDLKQYDAVVKKCISF-----------GQTK 371

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +        +      +A   A+      D++++ 
Sbjct: 372 DKFKDIFSNQVSVETMRDAFEKAVLFAKPGDIVLLC 407


>gi|258622767|ref|ZP_05717785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
 gi|258584955|gb|EEW09686.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
          Length = 451

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 114/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S V  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V KR           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVFKR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + + G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCAQPAQISANMDEFVAMIAKEAKAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|171911129|ref|ZP_02926599.1| UDP-N-acetylmuramate--L-alanine ligase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 460

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 124/371 (33%), Gaps = 43/371 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +    V+GT GK++  S +  + + +G +   +     I     +             
Sbjct: 105 QGKRNFVVSGTHGKTTTTSILTWLLEHAGRNPGYL-----IGGVPDNF-----DVGARYT 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              Y   +G  + +          H L      A    N+  DH D   T         R
Sbjct: 155 ESEYFVIEGDEYDTAFFDKRSKFLHYL----PEAVIVNNIEFDHADIFNTLDDILLTFSR 210

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P+     +  D+   +++++        V +    G+   ++        +   
Sbjct: 211 LL-RVVPRNGKVFLNGDEGNCRKLLEACPAPAVTVGT----GEDCEVRLRVTSAAPEHTD 265

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             + G    F  P+ GEF   NA +A  +    G+    +   L +   V  R    G  
Sbjct: 266 FELNG--VAFRLPMVGEFNARNAAMAICVARFAGLTDHEIRAALLEFRGVKRRQTERG-Q 322

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLA 410
             G  I  D+ H   ++   L+ +R      R+  +F    +  +        I AL  A
Sbjct: 323 VHGITIIDDFGHHPTAIRETLRGLRQKYPHSRLWALFEPRSNTSRRNTLQGELIDALKEA 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEII------------HGIPGFIEKGNRIEA-IRTAIEMLN 457
           D +I+   N     PEK+ A  +             G P + E+   ++A I     +  
Sbjct: 383 DGSIIAAVN----MPEKVPAGQLLDVDAVAAAVSASGRPSYHER--NVDAIIERLKPLAK 436

Query: 458 KQDVLVVAGKG 468
           + DV++V   G
Sbjct: 437 EGDVVIVFSNG 447


>gi|262276881|ref|ZP_06054674.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium
           HIMB114]
 gi|262223984|gb|EEY74443.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium
           HIMB114]
          Length = 463

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 149/417 (35%), Gaps = 49/417 (11%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V+S+A   + ++F+   +SN  I+   +    L            +  + ++G+ G
Sbjct: 69  ADIVVISTAIKPNNKEFNLAKKSNKLIIKRADMLAHLINL---------KKNIIISGSHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+++ S V  + + +      +     I+S   + +L                       
Sbjct: 120 KTTITSLVSHLLKDNKFFPTIVNG-GIINSIKSNAKLGKGEW-----------------S 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA        +   I       +N+  +H+DY++T Q   N+  + F    P     I
Sbjct: 162 VVEADESDGSFLKFKSI---FSIVSNIDIEHMDYYKTTQNLINS-FKFFLNKTPLLGKNI 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE--GKD--- 299
           +  DD   K+++K         L+ G+ +   +  K +  +    +  IS+   GK    
Sbjct: 218 VCIDDLNIKKLIKEIDKKN--FLTYGFAKNANLQCKNIRNVDMGMKFDISINSSGKKKLV 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G+  V NA     + + + I    + + L     V  R   +  N +   IY
Sbjct: 276 KNIFINLLGKHNVLNATATFAIGLLLNIKIERIKKSLSSFSGVQRRLTLIYENKKS-LIY 334

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DYAH    ++ +L   +    + +II +F                 +   AD  +V+  
Sbjct: 335 DDYAHHPTEIKAVLSACKNNFKNKKIIAIFQPHRFSRIISLYKDFIKSFIYADQVLVSPV 394

Query: 419 NPRSEDPE-----KIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
               E  +     K   +I+      + + N  + I     +      V++  G G+
Sbjct: 395 YSAGEKVKNFNHYKFCKDILLKSKTKVIRINSKDDIENFLKKNFQNNQVVIAMGAGN 451


>gi|164686367|ref|ZP_02210397.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
 gi|164601969|gb|EDQ95434.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
          Length = 451

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 104/264 (39%), Gaps = 18/264 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K       NL  DH++ H T + Y  AK  +F+    K    I+  DD   + +  + ++
Sbjct: 177 KPRVSMILNLSPDHLNRHHTMENYIMAKANIFKNQ-DKNDFTILNYDDEAVRALSSKCNS 235

Query: 263 AGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                     G +G +++ +    I+  +++ +  E +       LPG   + N + A  
Sbjct: 236 QVLYFSRKHQGVRGIYLNNEGNIVINIDKEIVLLHEDE-----LSLPGGHNLENCMAATL 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                GID  ++ E L+    V  R E+V T +    +        +S    +K + +  
Sbjct: 291 AAYVSGIDIEVIREVLKTFKAVEHRLEYVKTVNGVMYVNDSKGTNPDS---TIKAVTSYK 347

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
               I++   G D+D     ++     ++  + ++ +   + E   K       G     
Sbjct: 348 KP--IILIAGGYDKDSTYDELLDIAKQNVKALVLLGETASKIEACAK-----TKGFEIIK 400

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
              N  EA+ T+ E+ N+ DV+++
Sbjct: 401 RVQNMKEAVETSAELANEGDVVLL 424


>gi|254230042|ref|ZP_04923441.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|262392462|ref|YP_003284316.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|151937430|gb|EDN56289.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|262336056|gb|ACY49851.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
          Length = 452

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 123/360 (34%), Gaps = 29/360 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G +G +   K V       +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQALADVLER--GCWTEKQFSGVEGDWQAHKLVVD---GSKFE 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++++G+      + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VALQGEKVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
             +G  +Y D+AH   ++E+ +  +R     + I+           +      +A  L  
Sbjct: 320 EVQGVTVYDDFAHHPTAIELTVGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      + I  +     P F++   +   A    +E     D ++V   G
Sbjct: 380 ADEVFLFQPDNIEWSVQDITEQCQQ--PAFVDADIDNFVA--KIVERAQPGDQILVMSNG 435


>gi|256752933|ref|ZP_05493764.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748188|gb|EEU61261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 450

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 116/321 (36%), Gaps = 26/321 (8%)

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           S +    ++          +   L Y   +      + A         +   K       
Sbjct: 124 SLLGEMFKNTGRKVYVAGNIGYPLIYAVMEAAEGDFIVAEISSFQLETIKEFKPKISCII 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H+T + Y + K R+FE    ++   ++  DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLDRHKTFENYRDIKGRIFENQ-REDEYTVLNYDDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIG 326
             +     L +  A      + ISV G     +      +PGE  + NAL A+ +    G
Sbjct: 240 SRKS----LLENGAYIKDGSIYISVNGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ +     IV
Sbjct: 296 ISADVIANTLKTFKGVEHRIEFVD-EINGVKFYNDSKGTNP--DASIKAIQAL--KTPIV 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443
           +   G D+       +      +  + ++       +  +KIR             +  G
Sbjct: 351 LIAGGYDKGSEFDEFVKAFNGKVKKLILI------GQTAKKIRDTARKYSYPEDDILFAG 404

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
              EA++ A E   + D +++
Sbjct: 405 TLEEAVKKAYESAKEGDSVLL 425


>gi|303273394|ref|XP_003056058.1| udp-n-acetylmuramate-alanine ligase [Micromonas pusilla CCMP1545]
 gi|226462142|gb|EEH59434.1| udp-n-acetylmuramate-alanine ligase [Micromonas pusilla CCMP1545]
          Length = 594

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 125/383 (32%), Gaps = 57/383 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AIV SSA    +   +       + V N  ++L+  + R      +N++AV GT GK++ 
Sbjct: 136 AIVASSAVPRTNIEYSFAREAG-IPVYNRAQWLTRTSKR------KNVVAVAGTHGKTTT 188

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           AS V  +          +  T+ +     + R        +  + +    +   +     
Sbjct: 189 ASMVAMVLLE-----NDLDITALVGG---NVRQFPGGENAIGGSGNLFLIEADEYD---- 236

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                      G+       TN+  DH D  +  +    A  + F   +      +I  D
Sbjct: 237 -------GAFLGLSPQIAVITNVEFDHPDLFKCLRDVRVA-FKKFTRRIETGGSIVICGD 288

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPL 306
           DA S   M +A ++   V++ G+    +        +     T +V   + K  D    L
Sbjct: 289 DANSSTFMSKACSSKLEVVTYGFARNNLWRAMNVKSNTGGGTTFTVSRADVKKQDVSISL 348

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLE------------------------HLEKLHVV 342
           PG   V NAL A      I                                  L     +
Sbjct: 349 PGRHNVLNALAAIATASCIRDACDASCAAPSPSQRGCHRMKNLLCFDPVMFTALNNYRGI 408

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R +FVG       +Y DYAH   +++  +  +R       + V        +    + 
Sbjct: 409 ARRMQFVGFFGSCA-LYDDYAHHPTAIKAAIGAMREQYPEARVTVLFEPHTFSRTFVMLR 467

Query: 403 GKI-ALDLADIAIVTDD-NPRSE 423
             + AL   D  +VT   + R+E
Sbjct: 468 SFVAALSEVDRVMVTSVYDARTE 490


>gi|254423500|ref|ZP_05037218.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7335]
 gi|196190989|gb|EDX85953.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7335]
          Length = 505

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 130/414 (31%), Gaps = 56/414 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A      ++   +    PI    +    L          + +  +A+ GT GK++
Sbjct: 106 VVCSTAIGESNAEYKQALALGCPIFHRSDILAALM---------NEKKGIAIAGTHGKTT 156

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S    +  ++G+    I     +S++  +  +                     +V  E
Sbjct: 157 TSSITGYLLLKAGVDPTII-IGGEVSAWCGNAYVGQSD-----------------YVVAE 198

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A        +L       G  TN+  DH D++ +          +F++ + K    +   
Sbjct: 199 ADESDGSLVKLSS---QIGVITNIELDHPDHYTSLDQVVA----IFDQFVTKCKTVVGSI 251

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D    ++   R        +    +  +  +  V          +       +   PL G
Sbjct: 252 DCPTVRD---RIQPTISYSVEAEAKADYKAINIVETADGMTADILERGKLLGNLTIPLLG 308

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N L A  +   + +    +  HL        RFE  G ++       DYAH  + 
Sbjct: 309 LHNLSNTLAAIAVARLLHVSFESIQTHLPNFKGARRRFEHRGFHNE-ILFVDDYAHHPSE 367

Query: 369 LEMILKNIR--------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           ++  L   +        +    RI+ VF                   + AD  +VTD   
Sbjct: 368 IKATLAAAQVQRSQQLPSGRGRRIVAVFQPHRYSRATTLLSEFSTCFEGADRLLVTDIYS 427

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL--VVAG 466
             E        EK+   I   +P     G      R  +  L+  D++  + AG
Sbjct: 428 AGEANLTGITGEKLADVIAQHLPSTEYCGTLENTKRVLMTSLSSGDIVIFLTAG 481


>gi|260773493|ref|ZP_05882409.1| UDP-N-acetylmuramate--alanine ligase [Vibrio metschnikovii CIP
           69.14]
 gi|260612632|gb|EEX37835.1| UDP-N-acetylmuramate--alanine ligase [Vibrio metschnikovii CIP
           69.14]
          Length = 487

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 143/429 (33%), Gaps = 54/429 (12%)

Query: 66  QGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPE 115
           +GA   +   A      S+   S  I    P ++    ++        + A  +  +H  
Sbjct: 66  KGATIYLGHQAQHVSQASVVVVSTAINEQNPEIIAAREKRIPVVRRAEMLAELMRFRHG- 124

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  + V QI   +GL    +      S+       ++         ++
Sbjct: 125 --IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RILIA 176

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D +             F 
Sbjct: 177 EADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFETLKQTFVDFL 221

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R       V++ G+ +   + +        +   T+ 
Sbjct: 222 HNLPFYGQAVLCIDDPVVRELIPRISR---HVITYGFSEDADVRIADYHQQGQQGHFTVL 278

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            + K D      +PG     NA  A  +     ID   +L  +        RF+ +G   
Sbjct: 279 RQDKADLAITLNIPGRHNALNAAAAIAVASEDDIDDDAILRAMASTQGTGRRFDHLGEFA 338

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           T +    +  DY H    +++ +K  R   T  R++++F                  L+ 
Sbjct: 339 TGNGHVMLVDDYGHHPTEVDVTIKAARNGWTEKRLVMIFQPHRYTRTRDLYDDFAHVLEQ 398

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQD 460
            D+ ++ D     E P  I       +   I +  +I+ I              +L   D
Sbjct: 399 VDVLLMLDVYSAGEKP--IAGADGRSLCRTIRRRGKIDPIFIPDSAALPAVLANILQDGD 456

Query: 461 VLVVAGKGH 469
           +++  G G 
Sbjct: 457 LVLTQGAGD 465


>gi|323703625|ref|ZP_08115268.1| FolC bifunctional protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531397|gb|EGB21293.1| FolC bifunctional protein [Desulfotomaculum nigrificans DSM 574]
          Length = 437

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 134/389 (34%), Gaps = 51/389 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--------TISSFAQDNRLTTPSP 167
           NI+ + GT+GK S  + +  I   +G                   I+             
Sbjct: 42  NIVHIGGTNGKGSTTAMIASILMEAGYKVGMFTSPHLHSYTERFVINGECIAEAQLAQLI 101

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD---------------------GIKLIA 206
             +   L  + ++   H +    S  L  +                         +  + 
Sbjct: 102 TTVKPHLEAMVAEDYEHPTEFEVSTALALYYFAQAETDFVVLEVGLGGAIDSTNVVTPLV 161

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAG 264
              TN+  DH+DY     +     K  +      K+   ++ A D  + E++K+ A    
Sbjct: 162 SVITNVTLDHMDYLGPRVEDIARVKAGII-----KKGVPVVTAADGVALEIIKQVAGENN 216

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +++ VG    +  L         Q+  +      +    PL G  Q  NA  A      
Sbjct: 217 SKLIQVGQDITWTPLSSESEKGY-QEFLVKGLQNHYHVRLPLLGPHQQINASTAIAAVEM 275

Query: 325 I-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           +      I +  VL  L K+    GR E V    +   + +D AH       + + ++  
Sbjct: 276 LFRWGHHIPAQAVLAGLSKVRWP-GRMEIV---RQHPTVIIDGAHNHAGAVALRQALQQH 331

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIP 437
                II+V G   D++   R  +      LA   IVT  +NPR+ D  ++   +   + 
Sbjct: 332 FPHRDIILVLGMLADKE---RAKVVAELAPLARTVIVTRSNNPRAGDWTRLADYVKVYLD 388

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             + + N  EA++ A+ + ++  ++ + G
Sbjct: 389 DVMIEENVTEAVKKAVSLAHQDQLVCITG 417


>gi|295702921|ref|YP_003595996.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
 gi|294800580|gb|ADF37646.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
          Length = 469

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 123/368 (33%), Gaps = 34/368 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++        +    +  N  ++      +    F     G     ++ VTGT GK++ 
Sbjct: 63  VVITDHP----ELCTNLEGNIILVKTAQLEEAYWKFIEYYRGLFDLPVIGVTGTCGKTTT 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA-KALSYLSSQ-GVTHVSV 187
              ++QI                I  +       + + + +  + L+ +     V    +
Sbjct: 119 KEMIRQIL---------------IEDYKVKATWMSMNSMSVNLRYLTGIDDTTEVAVFEM 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +  G  +      +       N+G  H+   +T + Y  AK  + E L P     I+ 
Sbjct: 164 PVAYPGYLKVACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD   K V+  +H      +      +F   K +   +     T+  +  ++D   P  
Sbjct: 224 ADDENIKRVLDVSHLQNVVYIGKNDSSQFQ-AKDIKYANKGMAFTLKYQNTEYDAFIPGY 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VYNAL A      +GID ++ ++ L     V    EF    +    I   +  +  
Sbjct: 283 GEHNVYNALAAIAAVFYVGIDISVAIQRLSLFEQVEEHLEFKRGMNECTVINDTWNSSPL 342

Query: 368 SLEMILKNIRTITSGRIIVVFGC-------GGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           S+   L  +  ++  +  +           G    +    +  K A    DI +V     
Sbjct: 343 SMATALGVLSDMSKEKQSIALLGYMPQLGEGPYAIKQYEDMGKKAAESKIDILVV----- 397

Query: 421 RSEDPEKI 428
             E+ + I
Sbjct: 398 VGEEAKAI 405


>gi|197105787|ref|YP_002131164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
 gi|226722943|sp|B4RFS2|MURD_PHEZH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|196479207|gb|ACG78735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
          Length = 469

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 76/457 (16%), Positives = 142/457 (31%), Gaps = 70/457 (15%)

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF------ 105
            + D   F          A+++S    L   +       P   V+  R+  +        
Sbjct: 59  TRADWREF---------AAVMLSPGVPLTHPA-------PHWTVERAREAGAEIVGDIEL 102

Query: 106 ------ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A+  + +    I+A+TGT+GKS+  + +  IC  +G      G           
Sbjct: 103 FARTVNAAPEHKRP--KIVAITGTNGKSTTTALIGHICAEAGRDVRIGGNIG-------- 152

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                         L      G     +E SS+ LD      +        N+  DH++ 
Sbjct: 153 -----------YGVLGLEDMHGGAVYVLELSSYQLDL--TSSLHADVTVILNISPDHLER 199

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH- 278
           H T   Y  AK R+      K   A+I  DD + + +      A  R +      K +  
Sbjct: 200 HGTMDEYVAAKRRILLNQ-GKGDTAVIGVDDPWGQRICTEITAANRRTIVPVSASKAMSR 258

Query: 279 -LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            +  +  +        + E  D      LPG     NA  A      +GI      +HL 
Sbjct: 259 GVYALDGLLYDATGERAQEVADLKRARSLPGRHNWQNAAAAYAAARGLGISGEEAAQHLM 318

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               +  R E V    +   +    A  +++     + + +      I           G
Sbjct: 319 TFPGLAHRMETVAVLGKVRFVNDSKATNADAAR---QAMSSYPKFYWIAGGLPKTGGIDG 375

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              +  +I        +V +  P         A+++ G    +E G    A+R A     
Sbjct: 376 LIDLFPRIEKAY----LVGEAAPAF-------ADVLRGKAPAVESGTIEAAVRQAYADAR 424

Query: 458 K--QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              Q+ +V+      +     + E++       ++++
Sbjct: 425 AAGQEAIVLLSPACASFDQFADFEERGEAFRAAVQKL 461


>gi|281417761|ref|ZP_06248781.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
 gi|281409163|gb|EFB39421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
          Length = 466

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 123/381 (32%), Gaps = 40/381 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I AVTG+ GK++  + +  + +  G   +  G    I                +   
Sbjct: 116 PAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGG---NIGIPLLSKIEEIKDTDKVVLE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS      +T                          TN+  +H+D H++ + Y  AK  +
Sbjct: 173 LSSFQLHTMTK------------------SPNVAVVTNVSPNHLDVHKSMEEYVFAKKNI 214

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F     ++    +  D+  ++E    A              K   LK    +    +   
Sbjct: 215 FRYQSAEDRLV-LNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDGETET 273

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG   V N L A    I   +D  ++ +       V  R E V    
Sbjct: 274 EIAKAS---DIVIPGVHNVENFLAATAAVIDC-VDRDVIRKVATTFTGVEHRIELV-REI 328

Query: 354 RGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G + Y D  A +       L + +       +++   G D+      +   IA  +  +
Sbjct: 329 NGVKFYNDSIASSPTRTIAGLNSFKD-----KVILIAGGYDKKIPYDALGPVIAEKVKCL 383

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++    P+ E    +R E      G      +  +  EA++ A    +  DV+ +    
Sbjct: 384 VLIGQTAPKIEK--ALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVV-ILSPA 440

Query: 469 HETVHIVTNGEKKMSVDCDII 489
             +  +  N E++ +   +I+
Sbjct: 441 SASFDMFKNFEERGNRFKEIV 461


>gi|324112496|gb|EGC06473.1| UDP-N-acetylmuramate-alanine ligase [Escherichia fergusonii B253]
          Length = 491

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 144/420 (34%), Gaps = 54/420 (12%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+   S+ I ++ P +V  +  +        + A  +  +H    +A+ GT GK++ 
Sbjct: 77  RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTT 133

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V  I   +GL    +      ++                  ++       + +    
Sbjct: 134 TAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------RYLIAEADESDASFL---- 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       ++ +    TN+  DH+D +Q            F   LP    A++  D
Sbjct: 184 -----------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVD 232

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           D   +E++ R      ++ + G+ +   + ++    I  +   T+  + K+        P
Sbjct: 233 DPVIRELLPRVGR---QITTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPLRVTLNAP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IY 359
           G     NA  A  +    GI+  ++L  LE       RF+F+G       NS+ G   + 
Sbjct: 290 GRHNALNAAAAVAVATEEGIEDDVILRALESFQGTGRRFDFLGEFPLNPVNSKSGTAMLV 349

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    ++  +K  R       ++++F                  L   D  ++ + 
Sbjct: 350 DDYGHHPTEVDATIKAARAGWPEKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEV 409

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
            P  E P  I       +   I    +I+ I         EML       D+++V G G+
Sbjct: 410 YPAGESP--IPGADSRSLCRTIRGRGKIDPILVSDPAKVAEMLAPVLTGNDLILVQGAGN 467


>gi|218547548|ref|YP_002381339.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia fergusonii ATCC
           35469]
 gi|226711869|sp|B7LWF7|MURC_ESCF3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218355089|emb|CAQ87696.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia fergusonii ATCC
           35469]
 gi|325496027|gb|EGC93886.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia fergusonii
           ECD227]
          Length = 491

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 143/420 (34%), Gaps = 54/420 (12%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSV 129
              S+   S+ I ++ P +V  +  +        + A  +  +H    +A+ GT GK++ 
Sbjct: 77  RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTT 133

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V  I   +GL    +      ++                  ++       + +    
Sbjct: 134 TAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHG------RYLIAEADESDASFL---- 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       ++ +    TN+  DH+D +Q            F   LP    A++  D
Sbjct: 184 -----------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVD 232

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           D   +E++ R      ++ + G+ +   + ++    I  +   T+  + K+        P
Sbjct: 233 DPVIRELLPRVGR---QITTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPLRVTLNAP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IY 359
           G     NA  A  +    GI+  ++L  LE       RF+F+G       N + G   + 
Sbjct: 290 GRHNALNAAAAVAVATEEGIEDDVILRALESFQGTGRRFDFLGEFPLNPVNGKSGTAMLV 349

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H    ++  +K  R       ++++F                  L   D  ++ + 
Sbjct: 350 DDYGHHPTEVDATIKAARAGWPEKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEV 409

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
            P  E P  I       +   I    +I+ I         EML       D+++V G G+
Sbjct: 410 YPAGESP--IPGADSRSLCRTIRGRGKIDPILVSDPAKVAEMLAPVLTGNDLILVQGAGN 467


>gi|83949453|ref|ZP_00958186.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
 gi|83837352|gb|EAP76648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
          Length = 466

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 145/416 (34%), Gaps = 54/416 (12%)

Query: 66  QGA---EAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PE 115
           QGA    A++V+S      Y   +          + V ++   F   FA++ + +   P 
Sbjct: 61  QGAFDDIALLVTSPGIPHLYPEPNRVIAAALAAGVPVDNDIGLFFRSFAAQGFDEFDTPP 120

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GKS+ ++ +  +   +G +S   G                         L 
Sbjct: 121 RVVAVTGSNGKSTTSALIHHVLSEAGRASQLAGNIG-------------------RGVLD 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +    V +E SS+  +  R   +      FTNL  DH+D H     YF AK RLF 
Sbjct: 162 IDPPEDGGVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFS 219

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAH--NAGCRVLSVG----YQGKFIHLKKVCAIHNKQ 289
           E  P  +   +  D+A  + +  +     +  RV+ +       G    +       ++ 
Sbjct: 220 EGGPDRAVIGV--DEAEGRFLANQLSVGPSDDRVIRISSGTKLTGPGWQVFARKGFLSEY 277

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +        D   +  LPG     NA  A   C A+G+   ++         +P R + +
Sbjct: 278 RKGRQAGSIDLREIKGLPGAHNHQNACAAYAACRALGLAPRVIEAGFASFGGLPHRSQLI 337

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +    +    A   +S    L     I     I     G  ++ G   +   +A  +
Sbjct: 338 AEQNGVSFVNDSKATNVDSAARALMAYGRIR---WIC---GGLQKEGGLAGLAPGLANVV 391

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
               I  +    + D  +   EI   +           A+  A+E     D +++A
Sbjct: 392 KAYVIGREAAAFALDLGETETEICTTMER---------AVARAMEEAEPGDCVLLA 438


>gi|256850823|ref|ZP_05556212.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661034|ref|ZP_05861948.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           115-3-CHN]
 gi|282934508|ref|ZP_06339763.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|297205696|ref|ZP_06923091.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           JV-V16]
 gi|256615885|gb|EEU21073.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547971|gb|EEX23947.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           115-3-CHN]
 gi|281301455|gb|EFA93744.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|297148822|gb|EFH29120.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           JV-V16]
          Length = 435

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 122/393 (31%), Gaps = 58/393 (14%)

Query: 96  DNTRKFLSLFASRLYGKHPENI---------LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +N     +L        +P+ +         + ++G  GK+S  + +  +   +  +S+ 
Sbjct: 77  ENPEVAAALEMKVPMHSYPDTVEEIIQQYTSIGISGAHGKTSTTALLSHVLTEAAPTSYL 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           IG         +D+R                          E   H L  H         
Sbjct: 137 IGDGE--GRGVKDSRFFVYEAD-------------------EYRRHFLAYH------PDY 169

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH DY +      +A     ++    +    ++ DD   +++  +       
Sbjct: 170 QIMTNIDFDHPDYFKDINDTQSAFQSAADQ---TKKALFVWGDDPRLQKIETKIPK---- 222

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA 324
             + G+          V    +    ++   GK+  +F   L G+  + N+L   G+ + 
Sbjct: 223 -YTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKTHLFGDHNIMNSLAVIGVALT 281

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGR 383
             +    + + L        RF     +     +  DYAH    ++  ++  +      +
Sbjct: 282 EEVPMEDIQKGLLTYGGAKRRFS--EKDFGDITVIDDYAHHPTEMKATIQAAKQKFPDKK 339

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIPGFIE 441
           ++VVF         +        L   D A +T       E    I   ++   IPG   
Sbjct: 340 LVVVFQPHTYSRTKEFASEFIEILRGVDKAYITPIFGSAREKSGDISSEDLTSQIPGSEV 399

Query: 442 KGNRIEAIRTAIEMLN-KQDVLVVAGKGH-ETV 472
                  I    ++   +  V+V  G G  E  
Sbjct: 400 ID-----IANIADLTKNRNSVVVFMGAGDIEKY 427


>gi|297170501|gb|ADI21531.1| UDP-N-acetylmuramate-alanine ligase [uncultured verrucomicrobium
           HF0070_15G23]
          Length = 416

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 119/374 (31%), Gaps = 45/374 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +  L +TGT GK++ AS +  I   +G +     P+  I    ++             
Sbjct: 64  QGKRSLVITGTHGKTTTASLLAWILDCNGFN-----PSYLIGGIPENFSQGARFTDSEWI 118

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +                 H L                NL  DH D     Q    +  R
Sbjct: 119 VMEGDEYDTAFFDKRSKFLHYL---------PEVVLINNLEFDHSDIFNDLQQIQTSFKR 169

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P     ++  DD   K +        C + S                + +  V 
Sbjct: 170 LI-NLVPSNGLLLVNGDD---KNITPLIDVDHCPIESFTLS------HLTDLGYRQTGVR 219

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             ++G  F F  PL GE  V NAL    +    G+ +  +    +    +  R E V   
Sbjct: 220 FVLDG--FCFELPLYGELNVRNALGVIYIARYCGLSNKQIQGGFDSFEGIKRRME-VKAE 276

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLA 410
            RG  +  D+AH   ++   LK  R      RI  VF    +  +          +L  A
Sbjct: 277 IRGITVVDDFAHHPTAIRETLKAARVRFPGKRIWAVFEPRSNTTRRNIFQDELADSLKEA 336

Query: 411 DIAIVTDDN-------PRSEDPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +I IV++         P   D EK+   +    G+       + I  +   +    + DV
Sbjct: 337 EIIIVSEVARAGNISEPDLLDTEKLVHALNDFGGLASCFRSVDNI--LEHILGYAEEGDV 394

Query: 462 LVVAGKG-----HE 470
           + +   G     HE
Sbjct: 395 IFILSNGGFENLHE 408


>gi|257865983|ref|ZP_05645636.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC30]
 gi|257872316|ref|ZP_05651969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC10]
 gi|257875610|ref|ZP_05655263.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC20]
 gi|257799917|gb|EEV28969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC30]
 gi|257806480|gb|EEV35302.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC10]
 gi|257809776|gb|EEV38596.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC20]
          Length = 444

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 99/308 (32%), Gaps = 40/308 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   +AVTG+ GK+S    +  +      +SF IG   T          +  +  Y   
Sbjct: 103 QPYTSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIG-DGTGHGEPDAEFFSFEACEYRRH 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+Y                                 TN+  DH DY  + +  F+A   
Sbjct: 162 FLAY--------------------------SPDYAIMTNIDFDHPDYFHSIEDVFSAFQS 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
           +  ++   +     + DD Y +++      A   +   G      +  K +       + 
Sbjct: 196 MASQV---KKGIFAFGDDEYLRKL-----EADVPIYYYGVNDNDDVQAKNIERTTQGSEF 247

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + + G++   F+ P  G+  + NAL    +    G+D   V   +     V  RF    
Sbjct: 248 DVFIHGENIGHFVLPAFGQHNINNALSVIAVAYKEGLDMKEVAAEMISFPGVKRRFSEKI 307

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  I  DYAH    ++  +    +      II VF                 ALDL
Sbjct: 308 VADM--TIVDDYAHHPAEIKATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAEALDL 365

Query: 410 ADIAIVTD 417
           AD   + D
Sbjct: 366 ADHVYLCD 373


>gi|212639658|ref|YP_002316178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anoxybacillus
           flavithermus WK1]
 gi|212561138|gb|ACJ34193.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Anoxybacillus
           flavithermus WK1]
          Length = 447

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 119/350 (34%), Gaps = 39/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + +  + Q +       G   T++     +              
Sbjct: 109 APIIGITGSNGKTTTTTLIYHMLQEAKRRPLIAGNIGTVACEVAKHATKD---------- 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + +E SS  L        +       N+   H+DYH T++AY  AK  +F
Sbjct: 159 --------DIIVMELSSFQLL--GTIRFRPHIAVLLNIFDAHLDYHGTKEAYAEAKGNIF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    +   A++ ADD    ++ K++        SV     +    K  AI+   +  I 
Sbjct: 209 KNQT-ETDYAVVNADDPIVMQLAKKSRARHVP-FSVKTPLSYGATVKEGAIYFHDERIID 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G   + N L A       G D+  +   L     VP R +FV     
Sbjct: 267 TTD------VALRGTHNLENILAAVAAAKLAGADNEAIRRVLTTFTGVPHRLQFV-AEIN 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G + Y D   T+  +    K +        +++   G DR      ++       A +  
Sbjct: 320 GRKFYNDSKATN--ILATQKALSAFHEP--VILLAGGLDRGNEFDELLPYFKHVKA-VIT 374

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ E   +       GI       N  +A   A E  +  D++++
Sbjct: 375 FGQTAPKIERVAR-----EAGIQQVKRVDNVEQAAFAAYEWSSPGDIILL 419


>gi|291542832|emb|CBL15942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
           bromii L2-63]
          Length = 463

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 135/410 (32%), Gaps = 42/410 (10%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF------LSLFASRLYGKHPE 115
           +A   GAE ++  +  S  D     RS       D           L+      +   P 
Sbjct: 57  KAKEYGAELLLGENYLSEIDADIVFRSPGTPFYKDELVALRNKGVVLTSEMEVFFDLCPC 116

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTG+ GK++  + + +  + +G +    G                     L   + 
Sbjct: 117 RIIAVTGSDGKTTTTTIISEFLKAAGFNVHLGGNIG----------------KPLLPEIE 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++        VE SS  L   R           TNL  +H+D H+  Q Y ++K  +  
Sbjct: 161 SVNDDDCAV--VELSSFQLISMRKS---PDIAVVTNLAPNHLDIHKDMQEYIDSKKNIIL 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVT 292
                 S A++  D+  +    +       +  SV      G F+    +C     +   
Sbjct: 216 HQ-NAFSKAVLNLDNEITNGFSESVRGQLAK-FSVKENVSNGAFLDGDTICYNDYGKITR 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I            +PG   V N L A      + +D+  +    +    V  R EFV   
Sbjct: 274 I-----MNIHDIKIPGMHNVENYLAAISAVWGL-VDAETMTAVAKTFGGVAHRAEFV--R 325

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              G  Y + +  S+     L  +      + I +   G D+     P+   I   +  +
Sbjct: 326 EVDGVKYYNDSIASSPTRTALGTLSLY--KQKICIIAGGYDKHIPYEPLGPVINDKVKLL 383

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            ++ D  P+ E   K  +         +   N  EA+  A E   K D++
Sbjct: 384 ILLGDTAPKIEKAVKEASNYDADEIEIVNVTNMEEAVAVARERSTKGDIV 433


>gi|125973556|ref|YP_001037466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|158513249|sp|A3DE94|MURD_CLOTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125713781|gb|ABN52273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           thermocellum ATCC 27405]
          Length = 466

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 124/381 (32%), Gaps = 40/381 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I AVTG+ GK++  + +  + +  G   +  G    I                +   
Sbjct: 116 PAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGG---NIGIPLLSKIEEIKDTDKVVLE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS      +T                          TN+  +H+D H++ + Y +AK  +
Sbjct: 173 LSSFQLHTMTK------------------SPNVAVVTNVSPNHLDVHKSMEEYVSAKKNI 214

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F     ++    +  D+  ++E    A              K   LK    +    +   
Sbjct: 215 FRYQSAEDRLV-LNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDGETET 273

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG   V N L A    I   +D  ++ +       V  R E V    
Sbjct: 274 EIAKAS---DIVIPGVHNVENFLAATAAVIDC-VDRDVIRKVATTFTGVEHRIELV-REI 328

Query: 354 RGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G + Y D  A +       L + +       +++   G D+      +   IA  +  +
Sbjct: 329 NGVKFYNDSIASSPTRTIAGLNSFKD-----KVILIAGGYDKKIPYDALGPVIAEKVKCL 383

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++    P+ E    +R E      G      +  +  EA++ A    +  DV+ +    
Sbjct: 384 VLIGQTAPKIEK--VLRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVV-ILSPA 440

Query: 469 HETVHIVTNGEKKMSVDCDII 489
             +  +  N E++ +   +I+
Sbjct: 441 SASFDMFKNFEERGNRFKEIV 461


>gi|255535504|ref|YP_003095875.1| cyanophycin synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341700|gb|ACU07813.1| Cyanophycin synthase [Flavobacteriaceae bacterium 3519-10]
          Length = 876

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 129/359 (35%), Gaps = 38/359 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + +G   +++G T++   + Q+  LT         A   L    V    +E + 
Sbjct: 499 LIAHIVKNNG---YRVGFTTSDGIYIQNTMLTKGDTTGPISAEFILKDPTVEFAVLETAR 555

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MRLFEELLPKESPAII 246
            G+ +  L       G  TN+  DH+          N K      R+  + + K   +++
Sbjct: 556 GGILRSGLGFSSCDIGVLTNIKEDHLG----MNDIHNLKDLTKVKRVVLDAVKKGGWSVL 611

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTIS-------- 294
            ADD YS  +M    +    + S+        KF    K+  ++ +  +TI         
Sbjct: 612 NADDEYSMRLMPDLDSKIA-IFSLDENNEYIRKFAKEGKITCVYEEGFITIKKGEWKIRV 670

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVG 350
           V+             F + N L A       G     +   L  L       PGR     
Sbjct: 671 VKAHSVPITMEGKARFMISNVLAATLATYLHGFAIEDIANSLRTLIPSAALTPGRLNIF- 729

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +D+AH  +  E I   ++ + S + I +    GDR        GKIA  + 
Sbjct: 730 -KFKKFNVLIDFAHNPSGYEAIEDYLKNVDSPKKIGIISGVGDRRDEDIMQCGKIAGRMF 788

Query: 411 DIAIVTDD-NPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVL 462
           D  I+ ++ + R    E+I   +I GI        +      I+A++ A+ +  +   +
Sbjct: 789 DHIIIRNEKHLRGRTEEQINGLVISGIHSSGRDVSYEIIPVEIDALKHAMSLAEENTFI 847


>gi|297569452|ref|YP_003690796.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925367|gb|ADH86177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 497

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 155/440 (35%), Gaps = 58/440 (13%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            G + I++S    L      A   +  PI+            A          ++AVTGT
Sbjct: 81  AGVDVILLSPGIPLDIPALDAARAAGVPII---------GELALA-PEYLRTPVIAVTGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+V + V ++ + +G + F  G   T                 L + L+    Q   
Sbjct: 131 NGKSTVTTLVGELLRAAGRNVFVGGNLGTP----------------LCEYLA--GPQEAD 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS  LD               N+  DH+D +    AY  +K R+      +E  
Sbjct: 173 WAVLEVSSFQLDSA--GKFSPDIAVLLNISPDHLDRYPDYAAYAASKWRIVANQ-GREQW 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGK 298
           A+I  DD     ++  A     RV   G +G          ++         + + +  +
Sbjct: 230 AVINRDDPEILRLLA-AGPPASRVFGFGGRGMAGPLAANQSREAAPGPPVDGLRLCLTQE 288

Query: 299 DFDFLFP------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           D            L  E    NAL A       G   A V   L     +P R   V T 
Sbjct: 289 DEHCEEYPLPANELAVEPNRQNALAAVLAARLAGCPPAAVGPALAAFQALPHRLALVATV 348

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G R Y D   T+  +  ++  ++ +     +V+   G D+    R ++  I   +  +
Sbjct: 349 A-GVRYYDDSKATN--IGAVISALQGLPGP--VVLIAGGLDKGGDYRLLLPAIKEKVRAV 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            ++          EK+RA +   +P   E  +   A+R A ++    + ++++     + 
Sbjct: 404 VLIGS------AREKMRAALAPAVP-VTEAADLPSAVRIATQLAAAGEAVLLS-PACASF 455

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            +     ++  V    +RE+
Sbjct: 456 DMFAGYAQRGEVFRRAVREL 475


>gi|283783878|ref|YP_003363743.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter rodentium ICC168]
 gi|282947332|emb|CBG86877.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter rodentium ICC168]
          Length = 491

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 136/410 (33%), Gaps = 54/410 (13%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D    + ++   + V    + L+      +G      +A+ GT GK++  + V  I   +
Sbjct: 91  DNPEIVAAHEARIPVIRRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSSIYAEA 144

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           GL    +      ++        +         ++       + +               
Sbjct: 145 GLDPTFVNGGLVKAAGVHARLGHS------RYLIAEADESDASFL--------------- 183

Query: 201 GIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            ++ +    TN+  DH+D YH   +         F   LP    A++  DD   +E++ R
Sbjct: 184 HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVMCVDDPVIRELLPR 242

Query: 260 AHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317
                 ++ + G+     + ++    I  +   ++  +G  +       PG     NA  
Sbjct: 243 VGR---QITTYGFSDDADVRVEDYQQIGPQGHFSLLRQGMPELRVTLNAPGRHNALNAAA 299

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IYVDYAHTSNSL 369
           A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    +
Sbjct: 300 AVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLAPVNGKAGTAMLVDDYGHHPTEV 359

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +  +K  R       ++++F                  L   D  ++ D     E P  I
Sbjct: 360 DATIKAARAGWPDKHLVMLFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYAAGEAP--I 417

Query: 429 RAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
                  +   I    +I+ I         EML       D+++V G G+
Sbjct: 418 PGADSRSLCRTIRGRGKIDPILVSDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|226951755|ref|ZP_03822219.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ATCC 27244]
 gi|226837545|gb|EEH69928.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ATCC 27244]
          Length = 452

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 151/449 (33%), Gaps = 82/449 (18%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ--G---------AEAIVVSSAYS--LQD 81
           +DSR                 GH  IP+ I +  G         AE I++S   +  L +
Sbjct: 35  TDSRETPP-------------GHDQIPENIKKSFGKLDLDLLLQAEEIILSPGLAPQLPE 81

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               +    P++   +      L            I+A+TG++ KS+V +    + + +G
Sbjct: 82  IQQALEKGIPVI--SDI----QLLRRATD----VPIVAITGSNAKSTVTTLFGLMAKDAG 131

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                 G                        AL  L  Q    + +E SS  L+      
Sbjct: 132 KKVAVGGNLG-------------------RPALDLLKDQP-ELIVLELSSFQLE--TTSH 169

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        N+  DH+D H     Y  AK R+F+ +       +   DD+ S+ ++    
Sbjct: 170 LNAEVAVLLNMSEDHLDRHGDMLGYHKAKHRIFQGV----KKVVYNRDDSLSRPLVPDVT 225

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVA 318
                  S G     ++   V    +         G++         + G   V NAL  
Sbjct: 226 PMQ----SFGLNAPDMNQYGVLREADGSMWL--ARGRERLIKTSDLYIQGMHNVANALAC 279

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---N 375
             L  AIG+ +  +LE L++   +  R E+V T  +             +    ++    
Sbjct: 280 LALGEAIGLPTQSMLETLQQFKGLEHRCEYVQTVDQVRYYNDSKGTNVGATLAAIEGLGA 339

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                 G++ ++   G  + Q  +P+   I   +  + ++ +D         +  + +H 
Sbjct: 340 AIEAKHGKLALIL-GGQGKGQDFKPLRNAIQKYVKTVILIGED-------AAMIEQALHN 391

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +  +A+  A +    +DV+++
Sbjct: 392 TTQIQHASSLKQAVDIAHQATQAEDVVLL 420


>gi|91228830|ref|ZP_01262736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio alginolyticus 12G01]
 gi|91187601|gb|EAS73927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio alginolyticus 12G01]
          Length = 452

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 122/360 (33%), Gaps = 29/360 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G  G +   K V       +  
Sbjct: 207 LV-RTVPGNGLILAPRKDQALADVLER--GCWTEKQFSGENGDWQAHKLVLD---GSKFD 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++++G+      + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VALQGEKVGTVEWNLVGDHNVDNALMAIAAARHVGVTPDLACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
             +G  +Y D+AH   ++E+ +  +R     + I+           +      +A  L  
Sbjct: 321 E-QGVTVYDDFAHHPTAIELTVGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAESLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      + I  +     P F++   +   A    +E     D ++V   G
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQCTQ--PAFVDADIDNFVA--KIVERARPGDQILVMSNG 435


>gi|291459276|ref|ZP_06598666.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291418530|gb|EFE92249.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 452

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 126/355 (35%), Gaps = 43/355 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            + A+TGT+GK++  S V +I +     +  +G                           
Sbjct: 108 KLAAITGTNGKTTTVSLVGEILRSHFSDTHVVGNIGN------------------PFTAE 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L ++  +   +E SS  L+   +   +    + TN+  DH+D H++ + Y   K  +  
Sbjct: 150 ALETEDSSATVIEVSSFQLE--TIMDFRPDVSAITNITPDHLDRHKSMKNYIRIKESIAM 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++   + + D         +      +VL    +       K      K  +    
Sbjct: 208 NQTEEDCVVLNHEDPEL--RSFGKGKELKPKVLWFSSE----RELKEGFFLRKDALFFRE 261

Query: 296 EGKDFD-----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            GK+ +         L G+    N + A  +   +G+    ++   +    V  R EFV 
Sbjct: 262 AGKEAEELLKVRELKLLGKHNYENVMCAMAVSYRMGVPMRKIISVCKSFRPVEHRIEFV- 320

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              R G  Y + +  +N ++  ++ +R +  G +I++ G G D+       + +    + 
Sbjct: 321 -RKRSGVSYYNDSKGTN-VDAAIQALRAM-PGPVILI-GGGYDKHVDFDDWVKEFKGRVK 376

Query: 411 DIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++       +   +I      +G    +   +  EA+R      +  D +++
Sbjct: 377 YLVLI------GQTRSQIANCAKKYGFKNIMFAEDMDEAVRDCAAYADSGDFVLL 425


>gi|187250460|ref|YP_001874942.1| putative UDP-N-acetylmuramate-alanine ligase [Elusimicrobium
           minutum Pei191]
 gi|186970620|gb|ACC97605.1| Putative UDP-N-acetylmuramate-alanine ligase [Elusimicrobium
           minutum Pei191]
          Length = 475

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 138/410 (33%), Gaps = 59/410 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV++A    +       +  I    N     +L A+ +        +A++GTSGKS+  
Sbjct: 69  VVVTTAIEEDNVELVKAKSLGI----NIMHRAALLATHVAQN---RTIAISGTSGKSTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   + LS   I   +T+ +  +                     +G   + +  +
Sbjct: 122 AILYDILVEADLSPSVI-TGATLLALQEKGFYGN-------------VYRGAGDILIIEA 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                   L       G   N+ +DH  +D  +     F+++ + F          +  A
Sbjct: 168 D--ESDGSLVNYSPEIGVCLNIQKDHKELDILKGFFNTFSSQCKQF----------LYNA 215

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D+   KE  K          + G +      + +         T  ++G         PG
Sbjct: 216 DEEGLKEQFKGFK-------TFGLEEGDTRAENILMDGFGS--TFFIDGVKMHINT--PG 264

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  + NA+ A  +   +G+   ++   LEK   V  RF  VG  ++   +  D+AH  + 
Sbjct: 265 EHNIKNAVAAIAVAKELGVPLNVIAAALEKFKGVYRRFNSVGVFNK-IEVIDDFAHNPHK 323

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRD----QGKRPIMGKIALDLADIAIVTD-DNPRSE 423
           ++  +K    +   R++  F             +        L   D   +T+   P   
Sbjct: 324 IKAAVKAT-QLRGKRVLAYFQPHSFASIQLLTSEFIENICATLRPQDKLWMTEAYYPGGT 382

Query: 424 DPEKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            P+ + AE      +  G         R E  +       + D+++V G 
Sbjct: 383 IPQNVTAETIVKGLLKSGCANVKFNSCREEIAKEIAAEAKEGDIIIVMGA 432


>gi|222524101|ref|YP_002568572.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus sp. Y-400-fl]
 gi|222447980|gb|ACM52246.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus sp. Y-400-fl]
          Length = 461

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 134/439 (30%), Gaps = 60/439 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH     A  QGA+ ++ ++A   +  +  A   +  P L   +              + 
Sbjct: 39  GHD---PAYVQGADVVLATAAIRGTHPELEAAAAAGIPRLSRAD-------LWRLWSEQR 88

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++A+ GT GK++  +      + +G+    +   + + +     +   P    + +A
Sbjct: 89  P--VIAIAGTHGKTTTTALTALALRGAGIRCGFL-IGADVPALGGSAQWGDPEAPLVIEA 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y                         +       TN+  DH D + T   Y  A    
Sbjct: 146 DEYDRVFLA-------------------LTPALAIITNVEWDHPDVYPTPSEYTAA-FAA 185

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--------LSVGYQGKFIHLKKVCAI 285
           F   +      ++ ADD  +  +  ++      +        +S            V   
Sbjct: 186 FSRQVRDPRRLLVCADDPGALALAGQSEARLYGIDEHIATDPVSCRLAPLDWTASGVTGT 245

Query: 286 HNKQQVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              QQ  +    +              +PGE  V NA  A       G D    +  L +
Sbjct: 246 ATGQQFDLWYYDRRSFGRRLAATVTLAIPGEHNVRNATAALAAAALWGADLRTAVTALAE 305

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQG 397
                 RFE+ G    G  +  DYAH    ++  L   R      R+IV           
Sbjct: 306 YRGSSRRFEWRGDVG-GITVIDDYAHHPTEVQATLLAARQRYPDRRLIVYLQPHTFSRTR 364

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAE-----IIHGIPGFIEKGNRIEAIR 450
                   A   A + +V D  P  E  DP  +        I HGIP      +   A  
Sbjct: 365 SLWDQWPAAFREAAVVLVGDIYPAREQGDPVALAQSLVDHLIAHGIPARYAGPS-ALAPS 423

Query: 451 TAIEMLNKQDVLVVAGKGH 469
             + +    DV++  G G 
Sbjct: 424 ALLAVAQSGDVVLTLGAGD 442


>gi|217974677|ref|YP_002359428.1| UDP-N-acetylmuramate [Shewanella baltica OS223]
 gi|217499812|gb|ACK48005.1| UDP-N-acetylmuramate [Shewanella baltica OS223]
          Length = 463

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 113/359 (31%), Gaps = 28/359 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK+S +S +  I    G     +     I    Q+  ++           
Sbjct: 106 RWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFL-----IGGVPQNFGVS----------- 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       V  +         R   +          NL  DH D      A       
Sbjct: 150 ARLGKTAFFVVEADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P E   +  AD    K+ ++    +      +       + K +    +  +  
Sbjct: 210 LV-RTVPGEGKIVWPADSHAVKQTIEMGCWSEQETYHLAESTSGWYGKALSDDCH--RFE 266

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+    L + L G+  + NA++A      +G+  +  +E L K      R E +GT
Sbjct: 267 VFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELLGT 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++   LK +R       I V                 +A  +  
Sbjct: 327 -VNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSMMQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD A +            ++  +   +          + +          D +VV   G
Sbjct: 386 ADEAFL---YQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVMSNG 441


>gi|83589692|ref|YP_429701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
           thermoacetica ATCC 39073]
 gi|118595666|sp|Q2RK81|MURD_MOOTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83572606|gb|ABC19158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
           thermoacetica ATCC 39073]
          Length = 455

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 146/398 (36%), Gaps = 47/398 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S      +          I V         L            ++A+TGT+GK++  
Sbjct: 70  VITSPGVPSGEPPLARARARGIPVWSELELAYRLL------PPGVKVVAITGTNGKTTTT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S   +I Q +G  +   G                   I L K L  ++    ++V  E S
Sbjct: 124 SLCGRILQEAGWPAVVGGNIG----------------IPLVKELQEIAP--GSYVVCEVS 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   +        +  N+  DH+D H + + Y  AK R+      ++  AI+  DD
Sbjct: 166 SFQLEA--ITSFHPQVAAILNITPDHLDRHGSLENYIAAKARVMAYQEARD-FAILNYDD 222

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            +++ +   A  A  RVL    + +          V         T+ +          L
Sbjct: 223 PHTRSL---AGGARSRVLFFSRRERPPLGAWLEDGVICCDLGAGGTVKL---CHCEELSL 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + N++ AA + +A+G+D   +   L+    VP R E V   +  G  Y++ +  +
Sbjct: 277 KGSHNLENSMAAALVALALGVDPEQLTRTLKTFPAVPHRLEPVAEIN--GVCYINDSKGT 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           N  E  +K I   ++   +V+   G ++      +  ++A  +  + +V +     E  +
Sbjct: 335 NP-EATMKAINAYSNP--LVLIAGGRNKGSDFTLLAQQMAGRVKHLVLVGE--AARELEQ 389

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             R     GI       +   A+R A       D++++
Sbjct: 390 AARK---AGIDSIYLAPDFASAVREAAGAARPGDIVML 424


>gi|300715309|ref|YP_003740112.1| UDP-N-acetylmuramate-alanine ligase [Erwinia billingiae Eb661]
 gi|299061145|emb|CAX58252.1| UDP-N-acetylmuramate-alanine ligase [Erwinia billingiae Eb661]
          Length = 491

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 131/409 (32%), Gaps = 50/409 (12%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           QD    + +    + V    + L+      +G      +AV GT GK++  + V  I   
Sbjct: 90  QDNPEVVAAREARIPVIRRAEMLAELMRYRHG------IAVAGTHGKTTTTAMVSSIYAE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            GL    +      ++          S  YL   ++       + +              
Sbjct: 144 GGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-------------- 183

Query: 200 DGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             ++ +    TN+  DH+D YH   +         F   LP    A++  DDA  +E++ 
Sbjct: 184 -HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FVNFLHNLPFYGRAVLCIDDAVIRELIP 241

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R  +                              +  +          PG     NA  A
Sbjct: 242 RI-SRHITTYGFSEDADVRVENYQQNGAQGHFTLVRHDKPLMHVTLNAPGRHNALNAAAA 300

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG----GRIYVDYAHTSNSLE 370
             +    GI+ A +L  LE       RF+F+G      + G      +  DY H    ++
Sbjct: 301 VAVATEEGIEDAEILSALESFQGTGRRFDFLGEYPVQAANGTAGTAMLVDDYGHHPTEVD 360

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + +K  R      ++++VF                  L   D+ ++ D  P  E P  I 
Sbjct: 361 VTIKAARAGWPDKQLVMVFQPHRYSRTRDLYDDFANVLSQVDVLLMLDVYPAGEAP--IP 418

Query: 430 AEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
                 +   I    +++ I        ++ML       D++++ G G+
Sbjct: 419 GADSRSLCRTIRGRGKVDPILVSDHDAVLDMLAPKLSGNDLILIQGAGN 467


>gi|293370473|ref|ZP_06617026.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CMC
           3f]
 gi|292634465|gb|EFF53001.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CMC
           3f]
          Length = 458

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 127/367 (34%), Gaps = 43/367 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      +  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQS-----HVECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T+   DH+D + T+QAY  +   
Sbjct: 155 --NLLLSQTSPYTVIEADEFDRSFHWLS---PYMTVITSTDPDHLDIYGTEQAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V       G RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH  + ++  + ++R +   + I  +F                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D  I+ D  P  E P      + I   +  GI   + K    E I   + +L  +++ ++
Sbjct: 383 DEVILVDIYPAREAPIPGVTSKLIYDNLRPGIEKSMCK---KEEI---LNILKDKNIEVL 436

Query: 464 V-AGKGH 469
           +  G G 
Sbjct: 437 ITLGAGD 443


>gi|109947254|ref|YP_664482.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
 gi|109714475|emb|CAJ99483.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
          Length = 493

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q            +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLHQILQTKFNVHASPKSVNTLLGIANDINQNLEDSSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+      T +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITHLIEPHLAVITEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               + +         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLENAFC-------YSIETIKPYAPNNAPLIDYS-----SLVKNIQSTLKGTFFEMLL 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G    F   + G+F  YN  +A  +   +G+++  + + +  L+ +  R + +  N + 
Sbjct: 325 DGVWESFGTKVLGKFNAYNIALAILIAKHLGLETERIKQLVLNLNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + +D +   N L+ +L+ IR  ++  GR ++V     + +      + K   ++ D+A
Sbjct: 384 --VIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAKKINEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I + +       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKVIASHLKKPQKILLKDKGQLENILQATTI--QGDLILFA 486


>gi|153207176|ref|ZP_01945955.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918361|ref|ZP_02218447.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212219386|ref|YP_002306173.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuK_Q154]
 gi|226706319|sp|B6J5K2|MURC_COXB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120576837|gb|EAX33461.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165917867|gb|EDR36471.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212013648|gb|ACJ21028.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuK_Q154]
          Length = 465

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 136/434 (31%), Gaps = 57/434 (13%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
             DG      AI Q A+  V SSA      +  A  ++  P+L      K   + A+ + 
Sbjct: 59  NHDG-----TAITQ-ADCAVYSSAIGATNPELMAAKQAKIPLL------KRGEMLANLMK 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  +AV G  GK++ +  +      +    +F +G    +++     R+       
Sbjct: 107 EYQS---IAVAGAHGKTTTSGMLSHAFVEANLDPTFMVG--GVLNNSQTPARVGNG---- 157

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               ++       + + +                      TN+  DH+  +         
Sbjct: 158 -HYFIAEADESDASFLFM---------------HPDIAVVTNIDADHLSTYDGDFNRLKQ 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNK 288
               F E   ++   ++  DD   +E+         RV++ G+     + +   C    +
Sbjct: 202 TYIQFLEQTAQDGVVVLCLDDPILREIAPLLSR---RVITYGFSSDAQYRVVDYCQQGIQ 258

Query: 289 QQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               I    +         +PG+    NA     +   + ++   +L+ L     V  RF
Sbjct: 259 SLFQIHSPQRKAPLTVKLSMPGQHNALNATAVTAIADVVRMNEPALLKSLADFPGVDRRF 318

Query: 347 EFVGT---NSRGGRIYVDYAHTSNSLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
              G          I  DY H  N ++  +          R+++VF              
Sbjct: 319 TIRGEMILPKGNALIIEDYGHHPNEIKATLAAARAAWPERRMVLVFQPHRYSRTRDLMTE 378

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEM 455
               L   D  ++ +     E P        +   + +G+         ++ +  T  ++
Sbjct: 379 FVSVLAETDWLVLLEVYSAGEMPIPGADGMALIKMMSNGMAQKTTFVPLLQNLPETLQKL 438

Query: 456 LNKQDVLVVAGKGH 469
               D++++ G G+
Sbjct: 439 SQPNDIIILQGAGN 452


>gi|315303393|ref|ZP_07874000.1| UDP-N-acetylmuramate--alanine ligase [Listeria ivanovii FSL F6-596]
 gi|313628236|gb|EFR96762.1| UDP-N-acetylmuramate--alanine ligase [Listeria ivanovii FSL F6-596]
          Length = 447

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 149/448 (33%), Gaps = 65/448 (14%)

Query: 59  FIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           F    I  G   I  ++   + ++    +  + P++      KFL               
Sbjct: 53  FSADNIKSGLTIIAGNAFPDTHEEIERAMELDLPVI---RYHKFLGQLIDGY------TS 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +      +S+ IG  +   +                      
Sbjct: 104 IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGT---------------------- 141

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  + ++EA  +   +H L   K      TN+  DH DY ++    FNA    FE L
Sbjct: 142 --KGAEYFALEACEYQ--RHFLAY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+    D    E+ K   +        G   +F   K V       +  +    
Sbjct: 193 GKQVKKAVFALGDD--AELRKLTLDVPIIYFGFGEDNEFQ-AKNVIKETTGTRFDVYHRD 249

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    F  P  G+  V NAL    LC   G+    V   L+    V  RF    T     
Sbjct: 250 EFLASFEIPAYGDHNVLNALSVIALCDYEGLPVEAVKAELKTFEGVKRRFSI--TEKSNQ 307

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH  + +   +   R      +++ VF                 +L+LAD   +
Sbjct: 308 VLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYL 367

Query: 416 TDD--NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE- 470
            D   + R +      A++ H   G   I++ +  E ++          V++  G G   
Sbjct: 368 CDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PGAVILFMGAGDVQ 421

Query: 471 ----TVHIVTNGEKKMSVDCDIIREILG 494
                   V + E+    D ++ +  + 
Sbjct: 422 KFQAAYEKVLDQEEI--TDAEVKKSAIN 447


>gi|153940305|ref|YP_001392870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum F str. Langeland]
 gi|166224760|sp|A7GJB0|MURD_CLOBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152936201|gb|ABS41699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum F str. Langeland]
          Length = 458

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 124/362 (34%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T                
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  + E+   A         +G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNN-LLVLNKDDDLTNEMENEA---------LGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++++GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTIQGKEVCDSKDINLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+     G + Y D   +S S     + +  + S    V+   GG   +     + +  
Sbjct: 319 EFI-REVNGVKYYNDSIASSPS-----RTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQD 460
            D   I I+  D        KI++     I         +   +  EA++ A  +  K D
Sbjct: 373 YDKIKILILMGD-----TKNKIKSAFEKVISHKKCEMEIVIVNSMEEAVKVADNIAEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|322436304|ref|YP_004218516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164031|gb|ADW69736.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
          Length = 451

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 147/400 (36%), Gaps = 52/400 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVVS    L+       +     V+          ASR       +++A+TG++GK++  
Sbjct: 72  IVVSPGVPLETPEIAQAAAFGTAVIGEL-----ELASRFLD---GSVIAITGSNGKTTTT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +   +I   + L +   G                     L        S+  T   +E S
Sbjct: 124 TLTGKIFADAALPTLVGGNIG------------------LPVIDLIAESRPETWSVLEVS 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+       K       N+  DH+D H+T + Y+ AK R+       E   I+ A+D
Sbjct: 166 SFQLETATT--FKPRIAMVLNVTPDHLDRHKTFERYWEAKARI-TACQESEDFLILNAED 222

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----- 305
             ++++  +            + G+   +K+   +H +    +  EG   + + P     
Sbjct: 223 VNAQKMAAKTRAQIYW-----FSGR-RQVKQGAFVHGESVFFLGKEGGKPEPVLPVSEIA 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   V N L A       GID+  +   ++    V  R E V     G   Y D   T
Sbjct: 277 LKGAHNVENVLAAVCAARLAGIDAETIRAAVKGFRAVEHRLELVRVR-NGVEFYNDSKAT 335

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +  ++  +K + +   G  I +   G D+D     +   +   +  +  +          
Sbjct: 336 N--VDATVKAVESFAGG--IHLILGGKDKDSDYATLSALLKERVRVVYTIGS------AA 385

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           EKI  ++  G+   ++ G   +A++ A E     +++++A
Sbjct: 386 EKIERQL-DGVVKIVQAGTLDKAVKLAAEAAVSDEIVLLA 424


>gi|37678619|ref|NP_933228.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus YJ016]
 gi|37197359|dbj|BAC93199.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus YJ016]
          Length = 484

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 119/363 (32%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 132 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 182

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 183 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 237

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V+ R   +        + G+    + V    +     
Sbjct: 238 LV-RTVPGNGRILAPKQDGALTDVLSRGCWSDQE-----FSGQDGEWQAVKLSKDGSHFE 291

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L +      R E  G 
Sbjct: 292 VWLQGEQVGTVQWDLVGDHNVDNALMAIAAARHVGVTPDLACEALGRFINTKRRLELKG- 350

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V         +G        +L  
Sbjct: 351 EINGVAVYDDFAHHPTAIELTLAGLRNKVGDKKIIAVLEPRSATMKRGVHKETLAASLKQ 410

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         PE I     ++           + I+  +    +       ++V 
Sbjct: 411 ADEVFLYQ-------PESIAWSVQDVAAQCQQPAFTSDNIDQFVANIAQRAEAGTQILVM 463

Query: 466 GKG 468
             G
Sbjct: 464 SNG 466


>gi|116626353|ref|YP_828509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|122251657|sp|Q01Q46|MURD_SOLUE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116229515|gb|ABJ88224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 442

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 124/392 (31%), Gaps = 50/392 (12%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
              Y L       R    ++        + L A  L G+     + +TG++GK++  S  
Sbjct: 71  DVPYDLPPLEEARRHGVRVI------GEVELAAPFLKGR----TIGITGSNGKTTTTSLT 120

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +G+     G      +   ++                          +E SS  
Sbjct: 121 GHILREAGVPVQVGGNIGLPVTAMVESSRDDG------------------WNVLELSSFQ 162

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L+   +   +   G   N+ ++H+D H T + Y   K RLFE        A++ A+D   
Sbjct: 163 LE--TIHEFRAHIGLALNVTQNHLDRHHTFENYAAIKGRLFETQ-QAGDYAVLNAEDPVC 219

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              +  A      V     + K      +C         + +E  +        G   + 
Sbjct: 220 ---VAYAARTRATVQWFSSRKKVDPGATLCGNKLVLFGKLLMEAGEIPIR----GRHNIE 272

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L AA      G++ A +   +     V  R EFV     G   Y D   T  S++  L
Sbjct: 273 NVLAAAIAASRAGVEHAAIAAAVRSFRAVEHRLEFV-RKLNGVDFYNDSKAT--SVDATL 329

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +     G    V   G D+      +   +                     KI  +I 
Sbjct: 330 KALDAFPGGLW--VILGGKDKGLDYAALREPLTEKARAAL------LIGAAAGKIAEQIA 381

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +P  ++      A+R A       D +++A
Sbjct: 382 GAVP-LVDAKTLDGAVRHAFAHAAPGDTVLLA 412


>gi|325269658|ref|ZP_08136271.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella multiformis DSM
           16608]
 gi|324988026|gb|EGC19996.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella multiformis DSM
           16608]
          Length = 458

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 127/364 (34%), Gaps = 47/364 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ ++    I  +S L          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHLDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S     V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSAHSDFVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K    II     +    MK+    G +V      G   H   V               
Sbjct: 214 IQKGGALII-----HKGLEMKQHVQEGVKVYEYSRDGGDFHAGNVRIADGTITFDFLSPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++  D     P    + N + A  +    G  +  +   ++    V  RF+F   +SR  
Sbjct: 269 ENVRDVELGQPIPINIENGIAAMAMAQLNGCTAEELRNGMKTYGGVDRRFDFKIKDSRH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DYAH    +    K+++ + + R + V+F                 AL   D  I+
Sbjct: 328 VFLSDYAHHPKEILQSAKSLKELYADRKVTVIFQPHLYSRTRDFYKDFAEALSHFDEVIL 387

Query: 416 TDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           T+  P  E P          + +R +I       I K + ++ +R         DVLVV 
Sbjct: 388 TEIYPAREQPIPGVTSRLIYDNLRPDIEK---QMIRKEDVLDFVR-----SRDFDVLVVL 439

Query: 466 GKGH 469
           G G+
Sbjct: 440 GAGN 443


>gi|16273065|ref|NP_439297.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae Rd
           KW20]
 gi|260580223|ref|ZP_05848053.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
 gi|1171071|sp|P45066|MURC_HAEIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33356936|pdb|1GQQ|A Chain A, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356937|pdb|1GQQ|B Chain B, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356938|pdb|1GQY|A Chain A, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|33356939|pdb|1GQY|B Chain B, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|1574695|gb|AAC22794.1| UDP-N-acetylmuramate--alanine ligase (murC) [Haemophilus influenzae
           Rd KW20]
 gi|260093507|gb|EEW77440.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
          Length = 475

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 123/374 (32%), Gaps = 36/374 (9%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I  GA  +VVSSA    +          I V+    +   + A  +  +H  
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVTSKQKRIPVI----QRAQMLAEIMRFRHG- 120

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  + +  I  ++ L    +      S+          +  YL   ++
Sbjct: 121 --IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL---IA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++ +    TN+  DH+D ++       A    F 
Sbjct: 173 EADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFL 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             LP    A++ ADD    E++ +             Q  +                I  
Sbjct: 218 HNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICP 276

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---N 352
             +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G     
Sbjct: 277 NNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRP 336

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +   R+  DY H    + + +K  R      RI+++F                  L   D
Sbjct: 337 NGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVD 396

Query: 412 IAIVTDDNPRSEDP 425
             I+ D     E P
Sbjct: 397 ALIMLDVYAAGEAP 410


>gi|87123641|ref|ZP_01079491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
 gi|86168210|gb|EAQ69467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
          Length = 466

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 138/405 (34%), Gaps = 51/405 (12%)

Query: 70  AIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+VVS           A  +    ++            A      +    + +TGT+GK+
Sbjct: 72  AVVVSPGIDWNHPTLEALRQQGVAVI---------GEMALAWQFLNRTPWIGITGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG---VTH 184
           +V   +Q +    GL +   G                 S   LA +LS ++       T 
Sbjct: 123 TVTQLLQHVLSSGGLHAPMAGNVG-------------HSATELALSLSAVAPNDGDPATP 169

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +              +    G +T L  DH++ H T +AY   K      LL +    
Sbjct: 170 DWLVMEMSSYQIEAAAIVAPRIGIWTTLTPDHLERHGTLEAYRAIK----RGLLERSQIR 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303
           I  ADD+     + R   +    L +   G            + + V      G  F   
Sbjct: 226 IFNADDSD----LSRQRASWDHGLWISAAGAGDGATAADLWCDAEGVVHCRRRGPLFPAS 281

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG+    N L+     +  G++  ++   L     VP R E +G   +G +++ D 
Sbjct: 282 ALAMPGDHNRQNMLLVTAAALEAGLEPEVIAAALRTFPGVPHRLERLG-ELKGMQVFNDS 340

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+   +  +  +R++      VV   G  +       +  +      + +       +
Sbjct: 341 KATN--FDAAVVALRSVPRPA--VVLAGGQTKQGEAGEWLTLMGERSCAVVLYGS---GA 393

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEM---LNKQDVLV 463
           E+   + +    G PG I + + ++ A+  A+++   L    +L+
Sbjct: 394 EELANLLSS--SGYPGQIRRCDDLDAAVPIALDLGRQLRAGTLLL 436


>gi|153002099|ref|YP_001367780.1| UDP-N-acetylmuramate [Shewanella baltica OS185]
 gi|151366717|gb|ABS09717.1| UDP-N-acetylmuramate [Shewanella baltica OS185]
          Length = 463

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 112/361 (31%), Gaps = 28/361 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I    G     +     I    Q+  ++         
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFL-----IGGVPQNFGVS--------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D      A     
Sbjct: 150 --ARLGKTAFFVVEADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQF 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P E   +  AD    K+ +     +      +       + K +    +  +
Sbjct: 208 NHLV-RTVPGEGKIVWPADSHAVKQTIDMGCWSEQETYHLAESTSGWYGKALSDDCH--R 264

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    L + L G+  + NA++A      +G+  +  +E L K      R E +
Sbjct: 265 FEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELL 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT   G  +Y D+AH   ++   LK +R       I V                 +A  +
Sbjct: 325 GT-VNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSM 383

Query: 410 --ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             AD A +            ++  +   +          + +          D +VV   
Sbjct: 384 MQADEAFL---YQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVMSN 440

Query: 468 G 468
           G
Sbjct: 441 G 441


>gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
 gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
          Length = 810

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 140/398 (35%), Gaps = 65/398 (16%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL----VVDNTRKFLSLFASRLYGKHPE 115
           + + +A+GA        Y        I  +  I+    +  +  +++     +L   H  
Sbjct: 42  VDKLVAKGAR-------YLQGHKKNHIPEDCTIVYGSGIAKDNVEYIEAVRKQLPMLHRS 94

Query: 116 NILAV----------TGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTT 164
            +LA           +G+ GK++V+S +  I Q +    S+ IG  +++S          
Sbjct: 95  ELLAFLMQEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYAIGGLNSLS---------- 144

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                    L+  S      ++    S G  +H L          TNL  +H+   +  +
Sbjct: 145 ---------LNGYSGSSEYFIAEADESDGSLKHYL----PKVAVVTNLDNEHLSNFEGSK 191

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVC 283
               + +  F   +          D    +E+  R         S G+       +    
Sbjct: 192 EKLASTIEEFTRKVENPRLCFYNGD---CQELKGRISGT-----SYGFSQDCHLRIYSYS 243

Query: 284 AIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               +   ++S  GKD+ D    L G+  + NA VA G+ + +GID   + E L+    +
Sbjct: 244 QNGWRSLFSLSFLGKDYLDIDLNLIGKHNIANAAVAMGIALTLGIDEESIREALKNFAGI 303

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E    + +    + DYAH  + +   L+ +R    G   +V  C   R    +  +
Sbjct: 304 QRRMERKNISEK-FLFFEDYAHHPSEISCTLRGLRDAV-GLRRIVAICQPHRFSRLQYCL 361

Query: 403 GKI--ALDLADIAIVTDDNPRSED------PEKIRAEI 432
                A   AD  I+TD     E       PEK+   I
Sbjct: 362 EDFYKAFQDADEVILTDVYSAGETALDLPSPEKLAETI 399


>gi|49185423|ref|YP_028675.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
 gi|65319895|ref|ZP_00392854.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
 gi|227814595|ref|YP_002814604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacillus anthracis str. CDC 684]
 gi|254685159|ref|ZP_05149019.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254737610|ref|ZP_05195313.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743209|ref|ZP_05200894.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254751925|ref|ZP_05203962.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254760445|ref|ZP_05212469.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|49179350|gb|AAT54726.1| Mur ligase family, catalytic domain, C-terminal [Bacillus anthracis
           str. Sterne]
 gi|227006794|gb|ACP16537.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacillus anthracis str. CDC 684]
          Length = 99

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEML 456
           MG IA   +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M 
Sbjct: 1   MGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMA 60

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +  D++++AGKGHET  I+ +       D +  R+ +
Sbjct: 61  SSNDIVLIAGKGHETYQILKDSTIH-FDDKEKARQAI 96


>gi|312898962|ref|ZP_07758350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
 gi|310620124|gb|EFQ03696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
          Length = 454

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 119/324 (36%), Gaps = 24/324 (7%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS  +    +   V A            +K  +    NL  DH+D H T +AY  AK R+
Sbjct: 150 LSETAEDLPSSAVVVAELSSFQLELTSSLKAKSAVILNLTPDHLDRHHTMEAYGEAKKRI 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F     K   AI+  DD+    V   A +    VL +   G+      V A      + I
Sbjct: 210 FLNQ-DKNDYAILNYDDS---AVRAMASDLSGTVLYISVHGEVP----VGAFAADGNLYI 261

Query: 294 SVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +EGKD          L G+  + N L AA L    G    ++   L +   V  R E+V
Sbjct: 262 RMEGKDTCLCKETDLHLFGKHNIQNCLAAALLTYCAGASIDVIRRVLTEFRGVEHRLEWV 321

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                           +++ E  L+      SG +I++   G D+       M   A  +
Sbjct: 322 RDVKGVPYYNDSKGTNTDASEKALEAF----SGHLILI-AGGHDKMTDLTSFMKLAARKV 376

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
             + +V +   R E   +       G+      G +  +A+RTA E   K   ++++   
Sbjct: 377 DTLILVGEAADRFEAEAR-----KAGMKDIRRVGFSMEKAVRTAYETAEKGQTVLLSPAC 431

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
             +  +  + E++      I++ +
Sbjct: 432 S-SYDMYHHFEERGDDFKKIVKSL 454


>gi|317046895|ref|YP_004114543.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
 gi|316948512|gb|ADU67987.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
          Length = 438

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 145/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S   +L   + +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIIASPGIALAHPALSEAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G    Q+G    I                   ALS L S       +
Sbjct: 118 TVTTLVGEMARAAGW---QVGVGGNIG----------------LPALSLLKSP-AQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYEN----ARVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADD  +  V      A  R +S G      HL +           + V+G+        
Sbjct: 212 NADDGMTMPV----RGADTRCVSFGIDIGDYHLNRQQGSTW-----LRVKGEKVLNTDEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+ I  A  L+ L     +P RF+ V        I    A 
Sbjct: 263 KLVGQHNYTNALAALALADAVNIPRASSLKALTTFTGLPHRFQLVHEAHGIRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D    + 
Sbjct: 323 NVGSTEAALNGLQ--VKGTLWLLL-GGDGKSADFSPLARYVQGDNVRLFCFGRD---GDA 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI              +A+          D++++
Sbjct: 377 LAALRPEIA------TRTETLQQAMAQIASQAQAGDMVLL 410


>gi|119385135|ref|YP_916191.1| Mur ligase middle domain-containing protein [Paracoccus denitrificans
            PD1222]
 gi|119374902|gb|ABL70495.1| Mur ligase, middle domain protein [Paracoccus denitrificans PD1222]
          Length = 1020

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 139/411 (33%), Gaps = 41/411 (9%)

Query: 69   EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             A +V+           +    P+L V +    L         +   +++AVTG++GK+S
Sbjct: 617  AAAMVARPVE------GLAPGFPLLQVPDPLHALIQLGVAGRNRLKGHVVAVTGSAGKTS 670

Query: 129  VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA--LSYLSSQGVTHVS 186
             +  +     +             I + A +          LA     + L        +
Sbjct: 671  QSLMLMAAMAK---------DRKVIGNSALNYNSRVGILHLLANTPPSTDLVVVEAAVTA 721

Query: 187  VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAI 245
            + A      +     ++   G  TN+   H+       +     K  L E + P     +
Sbjct: 722  INAPKFQNIR----LMRPDIGLVTNIAPSHMQRSGQGLETVARRKANLVEGIAP-GGTLL 776

Query: 246  IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
            +  +  +    + RA      V++ G  G+   L+ V       +V   + G    D+  
Sbjct: 777  LNREIDFYDVFLDRAKQRDLCVVTFG-AGEDADLRLVGYDQATGRVKARLPGGGLLDYRI 835

Query: 305  PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVD- 361
              PG     N+L   G+ + +G D A  LE LE+     GR         G    +  D 
Sbjct: 836  SAPGRHMAMNSLACIGVRLLLGGDLAPFLEGLEEFQPAEGRGAVSRVEFEGCPLTVVDDS 895

Query: 362  YAHTSNSLEMILKNIRTIT-SGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAIVT 416
            Y     S++  L     +  +GR I++       G D  +  R +  +I     D  ++ 
Sbjct: 896  YNANPVSMQAALSTFAGMKVAGRRILILGDMAELGKDASRYHRGLAAQILKIRPDEVLLC 955

Query: 417  DDNPRSEDPEKIRAEIIHGIPGFIEKGN--RIEAIRT-AIEMLNKQDVLVV 464
                     +++  E+     G ++  +  R+E + +     L   D +++
Sbjct: 956  GPLM-----QELWDELSKSGAGRVDGAHYPRVEVLLSNLAGHLRSGDTVLL 1001


>gi|302389514|ref|YP_003825335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200142|gb|ADL07712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 452

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 145/412 (35%), Gaps = 53/412 (12%)

Query: 66  QGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENI 117
           +G E ++      L D       S  + S+ P+L     R     S      +      I
Sbjct: 52  KGIELVLGGHPLKLLDDTDLIVVSPGVPSDIPLLKEARERNIPVVSELEVGYWFT-KAPI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GK++  + + +I +  G +    G   T      D   +              
Sbjct: 111 IAITGTNGKTTTTTLIGEILKNDGKNISVAGNIGTPLIQEADKNGSK------------- 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 ++ VE SS  L+   +   K       N+  DH++ H+T + Y  AK R+ E  
Sbjct: 158 -----DYIVVEVSSFQLEN--IVRFKPKISVILNITEDHLNRHKTFENYIEAKARILENQ 210

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +E   ++  DD     + KRA +   +++    + +      V        + I   G
Sbjct: 211 -DEEDFTVLNYDDPIVASLEKRARS---KIVFFSRKQELQEGVYVKNDV----IVIRENG 262

Query: 298 KDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +  L      + G   + NAL A  +      +   + E L+  H V  R E+V T  
Sbjct: 263 NIYPILKAKELGIKGSHNLENALAAVAVAWITKANLNNLAETLKDFHGVEHRLEYVDTID 322

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I        ++ +  L+ +     G II++   G D+    RP +      +  + 
Sbjct: 323 GVKFINDSKGTNPDAAQKALEAV----DGPIILI-AGGYDKKVDFRPFVRSFFGKVKKVV 377

Query: 414 IVTDDNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++          ++I R     G     +  +  EA+  A       D +++
Sbjct: 378 LI------GATADQIERTAREEGFFEVEKAASMREAVEIAKRSAEPGDTVLL 423


>gi|294648998|ref|ZP_06726446.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825133|gb|EFF83888.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 452

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 148/447 (33%), Gaps = 78/447 (17%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ--G---------AEAIVVSSAYSLQDFS 83
           +DSR    G                IP+ I +  G         AE I++S   + Q   
Sbjct: 35  TDSRETPPGC-------------DQIPENIKKSFGKLDLDLLLQAEEIILSPGLAPQLPE 81

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                   I VV +      L            I+A+TG++ KS+V +    + + +G  
Sbjct: 82  IQQALEKGIPVVSDI----QLLRRATD----VPIVAITGSNAKSTVTTLFGLMAKDAGKK 133

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G                        AL  L  Q    + +E SS  L+      + 
Sbjct: 134 VAVGGNLG-------------------RPALDLLKDQP-ELIVLELSSFQLE--TTSHLN 171

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+  DH+D H     Y  AK R+F+ +       +   DD+ S+ ++      
Sbjct: 172 AEVAVLLNMSEDHLDRHGDMLGYHKAKHRIFQGV----KKVVYNRDDSLSRPLVPDVTPM 227

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAG 320
                S G     ++   V    +         G++         + G   V NAL    
Sbjct: 228 Q----SFGLNAPDMNQYGVLREADGSMWL--ARGRERLIKTSDLYIQGMHNVANALACLA 281

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIR 377
           L  AIG+ +  +LE L++   +  R E+V T  +             +    ++      
Sbjct: 282 LGEAIGLPTQSMLETLQQFKGLEHRCEYVQTVDQVRYYNDSKGTNVGATLAAIEGLGAAI 341

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               G++ ++   G  + Q  +P+   I   +  + ++ +D         +  + +H   
Sbjct: 342 EAKHGKLALIL-GGQGKGQDFKPLRNAIQKYVKTVILIGED-------AAMIEQALHNTT 393

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +  +A+  A +    +DV+++
Sbjct: 394 QIQHASSLKQAVDIAHQATQAEDVVLL 420


>gi|295099659|emb|CBK88748.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium cylindroides
           T2-87]
          Length = 435

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 129/378 (34%), Gaps = 52/378 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++  ++   +       + P +      ++L +   R       N + V GT GKS+  
Sbjct: 63  VIIGLSFDRSNPEVAAAMDNPTVKTYYYNEYLGILLKRY------NSICVAGTHGKSTTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             + Q+    G + F IG         ++            +     S            
Sbjct: 117 GILGQVLSHFGKTGFLIGDGH--GYMPKNADNFVLESCEFQRHFLAYS------------ 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH+DY++    Y +A      ++  K   A+I+ DD
Sbjct: 163 -------------PDYAIITNIELDHVDYYKDMDDYLDAFQSFIHQIKKK---AVIFGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPG 308
            Y K++     +     ++ G  +G       V             +  K+     P  G
Sbjct: 207 PYLKDL-----DYKVPCVTYGLNEGNDYRAINVEMGSYGMHFDCVYDNDKNIHVELPEVG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + +AL    LC  +G++++ ++E L++   +  R  FV    +      DYAH   +
Sbjct: 262 IPFLQDALGCFALCHEMGMEASDIVEGLKEYQGIARR--FVVEEVKDSVCIDDYAHHPTA 319

Query: 369 LEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDP 425
           +  ++   R    G+ +V ++                 +L+ AD   + D   N + ED 
Sbjct: 320 IRYMIDAARKKYPGKKVVALYKPDRYSRLQYFLDEFAESLNTADQVCLCDFPKNAKRED- 378

Query: 426 EKI---RAEIIHGIPGFI 440
           + I     +++   P  I
Sbjct: 379 DTITVTIQDLLDRCPNSI 396


>gi|332292534|ref|YP_004431143.1| UDP-N-acetylmuramate/alanine ligase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170620|gb|AEE19875.1| UDP-N-acetylmuramate/alanine ligase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 450

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 128/366 (34%), Gaps = 47/366 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ +S +  +   SG        T+ I     +                 L
Sbjct: 116 LAVAGTHGKTTTSSILGHLLAASGAP-----VTAFIGGITNNYNGN-------------L 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V VEA     D+  L  ++      T++  DH+D ++  +A   A  + F  L
Sbjct: 158 IQKGSDVVVVEADEF--DRSFLQ-LRPDILCVTSMDADHLDIYED-EADLIATFQEFGAL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P+    +          V                +      ++V   +      +   G
Sbjct: 214 APENKRFVKNGLPLAGNTVGIE-------------EDADYTAQRVRIENGAYVFDLHYPG 260

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              +   F LPG   ++NA+ A G+ ++ G     ++E L     V  RF +        
Sbjct: 261 GVLENLQFSLPGRHNLFNAVAALGMALSYGSPKEELVEALASYSGVNRRFTYRIQKEDM- 319

Query: 357 RIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  DYAH    +  + +++R +     ++ +F                +AL   D   +
Sbjct: 320 VIIDDYAHHPTEIAAVHQSVREMYPEESVLAIFQPHLFSRTKDFMNDFAVALSHFDEVAL 379

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-----AIEMLNKQDVLVVAGKGHE 470
            D  P  E+P    A I   +       +R + I+       ++  N + ++V+ G G  
Sbjct: 380 LDIYPAREEP---IAGITSEVLLSEMTLSRKQIIQKNELTDLVKDTNHK-IVVMMGAGDI 435

Query: 471 TVHIVT 476
            V I+ 
Sbjct: 436 GVEILK 441


>gi|229527526|ref|ZP_04416918.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|229335158|gb|EEO00643.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|327485027|gb|AEA79434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae LMA3894-4]
          Length = 451

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S +  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V++R           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDTALADVLQR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     ++        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEKVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 147

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 25/162 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSGI--DGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP- 114
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 115 -ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
              ++ +TGT+GK++ +  +++I    G  +  +  T  +  
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMDITRGLWG 144


>gi|320354033|ref|YP_004195372.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
 gi|320122535|gb|ADW18081.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
          Length = 482

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 95/279 (34%), Gaps = 20/279 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      T++  DH D      A   +    F   +P +   + + DD    E+ K A  
Sbjct: 193 RPHCTILTSVEFDHADIFADLAAIKASFAE-FIGRIPPQGALVAHLDDPVVAELAKVA-- 249

Query: 263 AGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
             C V+  G   G    +  +       + T+   G+       P+PG     NAL    
Sbjct: 250 -LCPVIGYGRGSGCEWRVVDLQVRGLASEFTVVHRGQPLGRCRLPMPGVHNCLNALAVIA 308

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L   +G     +++ L     V  R +  G   RG  +  D+AH   ++   L+ +R   
Sbjct: 309 LLSHLGFAFETIVQGLASFEGVKRRQQVRGV-VRGITVVDDFAHHPTAVRETLQALRLAW 367

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP-------EKIRAE 431
               +VV          +       A     AD  ++ +  P    P        ++ A+
Sbjct: 368 PDTRLVVVFEPRTNSSRRAVFQQDYATVFGSADQVLIREHVPLETVPISEQFSSGQLAAD 427

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           + + GI          EAI  A+       DV+V+   G
Sbjct: 428 LALRGIQAHAYTD--TEAILDALARQCQPGDVVVILSNG 464


>gi|320540404|ref|ZP_08040054.1| putative UDP-N-acetylmuramate:L-alanine ligase [Serratia symbiotica
           str. Tucson]
 gi|320029335|gb|EFW11364.1| putative UDP-N-acetylmuramate:L-alanine ligase [Serratia symbiotica
           str. Tucson]
          Length = 491

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 132/404 (32%), Gaps = 50/404 (12%)

Query: 89  NTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + P +V     +        + A  +  +H    +AV GT GK++  + V  I   + L 
Sbjct: 91  DNPEIVAAREARIPVIRRAEMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIYAEADLD 147

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              I      ++          S  +L   ++       + +                ++
Sbjct: 148 PTFINGGLVKAAGTH---ARLGSSRFL---IAEADESDASFL---------------HLQ 186

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +    TN+  DH+D +Q            F   LP    A++  DD   +E++      
Sbjct: 187 PMVAIITNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELL---PCV 243

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGL 321
           G  + + G+     + ++    +  +   T+S + K         PG     NA  AA +
Sbjct: 244 GRHITTYGFSNDADVRIENYHQLGAQGCFTLSRQDKPLITVTLNAPGRHNALNAAAAAAV 303

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTSNSLEMIL 373
               GID   +L  L        RF+F+G          +    +  DY H    ++  L
Sbjct: 304 ATEEGIDDDDILRALASFQGTGRRFDFLGEFPLATVNGKAGSAMLVDDYGHHPTEVDATL 363

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------E 426
           +  R      R++++F                  L   D+ ++ +     E P       
Sbjct: 364 QAARAGWPDKRLVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLEVYAAGETPIPGADSR 423

Query: 427 KIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +   I   G    I   +         ++L   D+++V G G+
Sbjct: 424 ALCRTIRSRGKLDPILVSDADSVPEILAQLLQADDLVLVQGAGN 467


>gi|160876819|ref|YP_001556135.1| UDP-N-acetylmuramate [Shewanella baltica OS195]
 gi|160862341|gb|ABX50875.1| UDP-N-acetylmuramate [Shewanella baltica OS195]
 gi|315269021|gb|ADT95874.1| UDP-N-acetylmuramate [Shewanella baltica OS678]
          Length = 463

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 112/361 (31%), Gaps = 28/361 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I    G     +     I    Q+  ++         
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFL-----IGGVPQNFGVS--------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D      A     
Sbjct: 150 --ARLGKTAFFVVEADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQF 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P E   +  AD    K+ +     +      +       + K +    +  +
Sbjct: 208 NHLV-RTVPGEGKIVWPADSHAVKQTIDMGCWSEQETYHLAESTSGWYGKALSDDCH--R 264

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    L + L G+  + NA++A      +G+  +  +E L K      R E +
Sbjct: 265 FEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELL 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT   G  +Y D+AH   ++   LK +R       I V                 +A  +
Sbjct: 325 GT-VNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSM 383

Query: 410 --ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             AD A +            ++  +   +          + +          D +VV   
Sbjct: 384 MQADEAFL---YQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVMSN 440

Query: 468 G 468
           G
Sbjct: 441 G 441


>gi|260463536|ref|ZP_05811735.1| Mur ligase middle domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030627|gb|EEW31904.1| Mur ligase middle domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 434

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 128/354 (36%), Gaps = 29/354 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTG+SGKS+V + +  I      +  ++   +T +S              L K ++  
Sbjct: 33  IGVTGSSGKSTVTALLGHILAAHRPTYARV-LANTFNSLVS----------TLYKRMTQA 81

Query: 178 SSQGVTHVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               V +V  EA + G+D  R   + ++      T +  +H+   +T +     K  +  
Sbjct: 82  GE--VDYVVFEAGASGIDTIRPMAEMLQPHVAVVTMVRLEHVARFRTLENVAVEKRAMVS 139

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ-QVTI 293
            L P +  A++ ADD Y   V   A  AGCRV++ G  +     +  + A +  +   +I
Sbjct: 140 ALRP-DGLAVLNADDPY---VADMAAGAGCRVVTFGMAETADYRVTDIRAAYPDRLTFSI 195

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G       P P E      + A    + +G+    V   +     V  R   + T  
Sbjct: 196 HWRGGLLQPETPFPAEHFWLPTVAAVATALELGVPPDKVAAQVATFQPVVNRCAVLVTEG 255

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
               I        +S+ + L  +   TS R  +V G   D     +      + A  + D
Sbjct: 256 GPQFILDAAKAPWHSINLALDMMAKATSSRKRIVLGQISDYAGSTKKYAFAYQTARGIVD 315

Query: 412 IAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I T DN  RS   +  R         F+E     E            ++++V
Sbjct: 316 QVIYTGDNAHRSRASQTDRDS-----GRFVELRTAKEVSDHIKRTAVPGELILV 364


>gi|320157546|ref|YP_004189925.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus MO6-24/O]
 gi|319932859|gb|ADV87723.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus MO6-24/O]
          Length = 453

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 120/363 (33%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V+ R   +        + G+    + V    +     
Sbjct: 207 LV-RTVPGNGRILAPKQDGALADVLSRGCWSDQE-----FSGQDGEWQAVKLSKDGSHFE 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+      + L G+  V NAL+A      +G+ + L  E L +      R E  G 
Sbjct: 261 VWLQGEQVGTVQWDLVGDHNVDNALMAIAAARHVGVTADLACEALGRFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V         +G        +L  
Sbjct: 320 EINGVAVYDDFAHHPTAIELTLAGLRNKVGDKKIIAVLEPRSATMKRGVHKETLAASLKQ 379

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         PE I     ++           + I+  +    +       ++V 
Sbjct: 380 ADEVFLYQ-------PESIAWSVQDVAAQCQQPAFTSDNIDQFVANIAQRAEAGTQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|262170518|ref|ZP_06038196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
 gi|261891594|gb|EEY37580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
          Length = 451

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 114/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S V  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V KR           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVFKR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + + G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCAQPAQVSANMDEFVAMIAKEAKAGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|319791666|ref|YP_004153306.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
 gi|315594129|gb|ADU35195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
          Length = 735

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 146/403 (36%), Gaps = 57/403 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAVTGT+GK++V +   Q+ +R+G S    G    I     D          L      
Sbjct: 345 VLAVTGTNGKTTVTALTGQLVERAGKSVAVAG---NIGPTLLDTLAAHIDAETLP----- 396

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS  LD   + G +  A +  NL +DH+D+H    AY  AK R+F  
Sbjct: 397 ------DVWVLELSSFQLD--GVQGFEPTAATVLNLTQDHLDWHGDMPAYAAAKARIFGA 448

Query: 237 LLPKESPAIIYADDAYSKEVM------KRAHNAGCRVLSVG--------------YQGKF 276
               +   I+  DDA    ++      K         ++ G                G  
Sbjct: 449 ----KGLMILNRDDAGVMAMLPPPVRVKLQRPQIRTHVTFGSAMPLRPGDYGIERINGIG 504

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG-------EFQVYNALVAAGLCIAIGIDS 329
             ++ + A   +++   +V  ++  F   +P             NAL A  L  A     
Sbjct: 505 WLVRALEADETQKRKRGAVVEEEIFFQRLMPADALRIRGRHNAMNALAALALATAADCPL 564

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +L  L +    P R E +         Y D +  +N +   +  +  +   R +VV  
Sbjct: 565 GPMLYGLREYRGEPHRVEPIALIDDVE--YFDDSKGTN-VGATVAALNGLGEDRRVVVIL 621

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G  + Q   P+   +A     + ++  D P       I A + +     +   +  EA+
Sbjct: 622 GGEGKGQDFEPLAAPVAQHARAVVLIGRDAP------LIEAALANTGVSLMHAASMDEAV 675

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + A    N  D ++++     +  +  + E +  V  ++++ +
Sbjct: 676 KLAAARANPGDAVLLS-PACASFDMFKDYEHRAEVFREVVQAL 717


>gi|319425223|gb|ADV53297.1| UDP-N-acetylmuramate [Shewanella putrefaciens 200]
          Length = 464

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 111/359 (30%), Gaps = 24/359 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +     +      +     S  ++ +
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFL--IGGVPQNFGVSACLGESAFFVVE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 162 ADEYDSAFFDKRSKFVHYH------------PRTLVINNLEFDHADIFADLAAIQKQFNH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P E   I   D    K+ +     +              + K +    +     
Sbjct: 210 LI-RTVPGEGKIIWPVDVQAVKQTIDMGCWSEQEHYHTAESITGWYGKALSDDCH--CFE 266

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+    L + L G+  + NA++A      +G+  +  +E L +      R E +GT
Sbjct: 267 VFFDGESQGVLEWDLIGQHNIENAIMAIAAARHVGVKPSAAIEALAQFIPPKRRLELLGT 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++   LK +R       I+V                 +A  +  
Sbjct: 327 -VNGISVYDDFAHHPTAIATTLKGMRAKVGQSKIIVVLEPRSNTMKSGVHKDTLAYSMMQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD A +            ++  +   +   +      E +          D +VV   G
Sbjct: 386 ADEAFL---YQADTIDWNMKEAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVVMSNG 441


>gi|326564735|gb|EGE14948.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 12P80B1]
          Length = 460

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 117/361 (32%), Gaps = 24/361 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++LAV GT GK++  + +  I Q SG+ +   IG    +++  +   L      YL K 
Sbjct: 103 RHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGKQ 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V       S+    + +    +       NL  DH D      A    +   
Sbjct: 163 F------FVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAI-QTQFHH 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++P +   II A+    +  + +       V+     G      K+ A ++     +
Sbjct: 216 MIRMIPSKGQIIIPANTPSLETTLDK--GVWTTVVRTSLNGDAEWQAKLDA-NDGSSFWV 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + + G   V NAL A      +G+   +    L     +  R E +G + 
Sbjct: 273 HHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG-DV 331

Query: 354 RGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
               ++ D+AH   ++   L    + +T  RI  +          G        +  +AD
Sbjct: 332 DDILVFDDFAHHPTAISTTLDGAKKRLTPRRIWAIIEPRSNTMKLGSHRPHLAASAAIAD 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             I         +P+ +   +   I         + I A I          D +++   G
Sbjct: 392 QVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIMSNG 444

Query: 469 H 469
            
Sbjct: 445 D 445


>gi|150025184|ref|YP_001296010.1| cyanophycin synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|149771725|emb|CAL43199.1| Cyanophycin synthetase [Flavobacterium psychrophilum JIP02/86]
          Length = 874

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 120/365 (32%), Gaps = 43/365 (11%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + +G     +G T++   + Q++ +          A   L    V    +E + 
Sbjct: 499 LLAHIVKNNGYK---VGFTTSDGIYVQNHMMEKGDTTGPVSAEYILKDPTVEFAVLETAR 555

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   +      TN+  DH+      T       K  +    + KE  AI+ A+
Sbjct: 556 GGILRSGLGFSRCDIAIVTNIQEDHLGLSDIYTLDDLARVKATVVRS-VKKEGWAILNAE 614

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC------AIHNKQQVTIS--------V 295
           D Y    +K A    C V           +KK+C      A++    +TI          
Sbjct: 615 DDYC---IKIAKELSCNVAYFSLTEDNAVIKKMCKEGKTVAVYENGYITIKKGEWKIRVE 671

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
                        +F + N L A       G  +  +   L+         PGR      
Sbjct: 672 RATHVPLTLGGKAKFMIANVLAATLASYLYGFKTEDISLSLQTFIPSVAQTPGRMNIF-- 729

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +  ++ VD+AH       I   +  I + + I +    GDR        G IA  + D
Sbjct: 730 EFKKFKVLVDFAHNPAGYRGIEGYLENIDAIKKIGIIAGVGDRRDEDIKECGLIAGRMFD 789

Query: 412 IAIVTDD-NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQ----- 459
             I+  +   R    E+I   I+ GI               IEAI+ AI+          
Sbjct: 790 HIIIRQEKYLRGRTEEEIIDLILEGIAESGREVTHEIIPKEIEAIKHAIDNAEVGSFITA 849

Query: 460 --DVL 462
             DV+
Sbjct: 850 LSDVV 854


>gi|145630239|ref|ZP_01786021.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145641273|ref|ZP_01796853.1| D-alanine--D-alanine ligase [Haemophilus influenzae R3021]
 gi|144984520|gb|EDJ91943.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145274110|gb|EDK13976.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.4-21]
          Length = 475

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 126/376 (33%), Gaps = 40/376 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA      +  A+ +   P++      +   + A  +  +H
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVI------QRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I  ++ L    +      S+          +  YL   
Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D ++       A    
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +             Q  +                I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFI 334

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +   R+  DY H    + + +K  R      RI+++F                  L  
Sbjct: 335 RPNGKVRLVDDYGHHPTEVGVTIKAAREGWGEKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGEAP 410


>gi|288800651|ref|ZP_06406108.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332112|gb|EFC70593.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 459

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 130/367 (35%), Gaps = 44/367 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT GK+S ++    I  +S +          +   ++D               +Y+
Sbjct: 115 ICVAGTHGKTSTSTMCAHILHQSNVDCNAF-----LGGISKDYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S+   +V +EA       H L   +  A   T+   DH+D + T++AY  +  + +  L
Sbjct: 158 LSKDSEYVVIEADEFDRSFHWL---RPYATVITSTDPDHLDIYGTKEAYLES-FKHYTTL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II      +  V+      G +V          H + +   + +         
Sbjct: 214 IQPGGALIIKKGLEMTPAVVD-----GVKVYEYSENEGDFHAENIKIENGEITFDFISPI 268

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++ ++     P    + N + A  L    G  +  +   +   H V  RF+F   N +  
Sbjct: 269 ENVYNIQLGQPVPINIENGVAAMALAQICGCTADELRYGMSSYHGVVRRFDFKIKNDKH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +    ++++ + + R I  +F                 AL L D  I+
Sbjct: 328 VLLSDYAHHPKEIFQSARSLKQLYNNRKITAIFQPHLYSRTKDFYKDFAEALSLLDEVIL 387

Query: 416 TDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGK 467
            D  P  E P +      I   +  G+   +            +++  ++  DVLV+ G 
Sbjct: 388 CDIYPARELPIEGVTSKLIYDCLKDGVQKQMIHK------EELLDLARERDFDVLVILGA 441

Query: 468 GH-ETVH 473
           G  E+  
Sbjct: 442 GDIESYM 448


>gi|157147485|ref|YP_001454804.1| UDP-N-acetylmuramate--L-alanine ligase [Citrobacter koseri ATCC
           BAA-895]
 gi|166222972|sp|A8ALK5|MURC_CITK8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157084690|gb|ABV14368.1| hypothetical protein CKO_03284 [Citrobacter koseri ATCC BAA-895]
          Length = 491

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 134/437 (30%), Gaps = 55/437 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLY 110
            Q  + GA         +++D S  + S     + P +V  +  +        + A  + 
Sbjct: 58  QQLASLGATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMR 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +H    +A+ GT GK++  + V  I   +GL    +      ++        +      
Sbjct: 118 FRHG---IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------ 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +Q         
Sbjct: 169 RYLIAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQT 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              F   LP    A++  DD   +E++ R                    +          
Sbjct: 214 FINFLHNLPFYGRAVMCVDDPVIRELLPRV-GRQTTTYGFSDDADVRVEEYQQVGPQGHF 272

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +  +          PG     NA  A  +    GID   +L  LE       RF+F+G
Sbjct: 273 TLLRQDKPAMQVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLG 332

Query: 351 ------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
                  N + G   +  DY H    ++  +K  R       +++VF             
Sbjct: 333 EFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMVFQPHRFTRTRDLYD 392

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEML 456
                L   D  ++ D     E P  I       +   I    +I+ I         +ML
Sbjct: 393 DFANVLTQVDALLMLDVYAAGEAP--IPGADSRSLCRTIRGRGKIDPILVSDPAQVAQML 450

Query: 457 NK----QDVLVVAGKGH 469
                  D+++V G G+
Sbjct: 451 APVLTGNDLILVQGAGN 467


>gi|296101254|ref|YP_003611400.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055713|gb|ADF60451.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 491

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 138/408 (33%), Gaps = 51/408 (12%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +  A   +  P++     R+   + A  +  +H    +A+ GT GK++  + V  I   
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIYAE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +GL    +      ++        +         ++       + +              
Sbjct: 144 AGLDPTFVNGGLVKAAGVHARLGHS------RYLIAEADESDASFL-------------- 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E++ R
Sbjct: 184 -HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPR 242

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALV 317
                 ++ + G+ +   + +++   I  +   T++ + K+        PG     NA  
Sbjct: 243 VGR---QITTYGFSEDADVRVEEYKQIGAQGHFTLARQDKELLHVTLNAPGRHNALNAAA 299

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IYVDYAHTSNSL 369
           A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    +
Sbjct: 300 AVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLDAVNGKPGTAMLVDDYGHHPTEV 359

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           +  +K  R       ++++F                  L   D  ++ D     E P   
Sbjct: 360 DATIKAARAGWPEKNLVMIFQPHRFTRTRDLYDDFASVLSQVDTLLMLDVYSAGETPIPG 419

Query: 426 ---EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                +   I   G    I   +  +       +L   D++++ G G+
Sbjct: 420 ADSRSLCRTIRGRGKVDPILVSDPAQVAEILAPVLTGNDLILIQGAGN 467


>gi|113475629|ref|YP_721690.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
 gi|110166677|gb|ABG51217.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
          Length = 902

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 127/364 (34%), Gaps = 36/364 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  +    T        A   LS   V    +E + 
Sbjct: 505 LLAHIIKQTGKV---VGYTTTDGTYIGEYLAETGDNTGPQSAHLILSDPTVEVAVLETAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           AK++ +  E +  +  A++ A+D
Sbjct: 562 GGILRSGLGFSSCEVGIVLNVTADHLGIGDIDTIEQLAKLKSVVAESVMPKGYAVLNAED 621

Query: 251 AYSKEVMKRAHNAGCRV---------LSVGYQGKFIHLKKVCAIHN-KQQVTISVE-GKD 299
                +  R                 L     G    + +   I   K   T+ +E   +
Sbjct: 622 PLVAAMADRVKGQVAYFSMDPNNELLLRHTEAGGLAAIYENGYISILKGDWTLRIEKAVN 681

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRG 355
                     F + NAL A       G+    + + L          PGR       S  
Sbjct: 682 VPITMAGKAPFMIANALAACLAVFTQGVKIEHIRKGLSTFVASVDQTPGRMNMFNMGSYH 741

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH   S E +   +R     RI VV G G  RD+    + G++A D+ D  I+
Sbjct: 742 ALV--DYAHNPASYEALGGFVRNWPGKRIGVVGGPGDRRDEDFVSL-GELAADIFDEIII 798

Query: 416 TDDN-----PRSEDPEKIRA---EIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
            +D+     PR    E I     + ++GI        +    +   AI TA++      +
Sbjct: 799 KEDDDTRGRPRGNAAELICQGVKQFLNGIKNSESKATYESILDETAAINTALDRAPIDGL 858

Query: 462 LVVA 465
           +V+ 
Sbjct: 859 VVIL 862


>gi|260891629|ref|ZP_05902892.1| UDP-N-acetylmuramate--alanine ligase [Leptotrichia hofstadii F0254]
 gi|260858639|gb|EEX73139.1| UDP-N-acetylmuramate--alanine ligase [Leptotrichia hofstadii F0254]
          Length = 453

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 148/440 (33%), Gaps = 54/440 (12%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP---ILVVDNTRK-----FLSLFASRLY 110
           +I Q         V      L  +S  I+   P    +V +N +K      L+   +R  
Sbjct: 54  YIGQVEEN-----VKDKGIDLFVYSTAIKETNPEYKYIVDNNIKKIKRGELLAEIMNRFD 108

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G      +AV GT GK++ +S +              G    I S +Q            
Sbjct: 109 G------IAVAGTHGKTTTSSMMSVALLEKEPFIVVGGIIPEIRSNSQIGNSEYFIAEAD 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L                        IK      TN+  DH+D+H T +    + 
Sbjct: 163 ESDNSFL-----------------------YIKPKYSVVTNIEADHLDHHGTFENIKKSF 199

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            +  +     E  A++  D    ++V     N      S+  +   I+ K +   +    
Sbjct: 200 EQFIDS---TEKIAVLCKD--TVEKVGLNIKNKNVVWYSIKDETADIYAKNIRVENGITS 254

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+D   F   +PGE  V N+L           +   V E + K      R++ +
Sbjct: 255 FEVVKKGEDLGTFSLSIPGEHNVSNSLPVIYFAHEFKCNMKKVKERILKFKGANRRYQVI 314

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N+   R+  DYAH    +++ +        G++ V+F                 +L  
Sbjct: 315 YDNNL--RLIDDYAHHPTEVKVTINAAHNTEKGKVTVIFQPHRYSRTKFFFDDFVNSLKD 372

Query: 410 ADIAIVTDDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGK 467
           AD  I+      SED    + +E++    G   +    E I   I+      +  V  G 
Sbjct: 373 ADDLILLPIYAASEDNTYGVSSELLAEKIGGNVRVQTQEEIEEIIKNDRDNGNTYVFMGA 432

Query: 468 GHET--VHIVTNGEKKMSVD 485
           G  +   H + +  +KM +D
Sbjct: 433 GSVSKVAHEIASDLRKMEID 452


>gi|217077223|ref|YP_002334941.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho africanus TCF52B]
 gi|217037078|gb|ACJ75600.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho africanus TCF52B]
          Length = 433

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 136/412 (33%), Gaps = 53/412 (12%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            +P+ I   A+ IV + A S  +          I V+      +S+         P   +
Sbjct: 52  HLPENIDN-ADLIVRTPAVSEDNVEVKKAKENGIPVISRLEHHISILR-------PYTKI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTGT GK++  + +  +  + G                 D  +   S   + +  +Y  
Sbjct: 104 GVTGTDGKTTTTAMLAHVLLKLGK----------------DPTVFLGSTHPMLEHGNYRK 147

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +    ++ S  G + +            TN+  DHI+  +  Q Y       FE   
Sbjct: 148 GSNIAVFEMDESQPGFENY-----NPDYLIITNIRGDHIENFKNLQHYN----SCFENSC 198

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +   ++           N     +  G       + K+      Q++TI+    
Sbjct: 199 KNVKICVSNVEN-----------NIINNSIKFGLNDGDYKINKIENNKFSQKITINTPYG 247

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F+  +PG     NAL    L   +G +  LVLE      +   RF+ +  N     I
Sbjct: 248 KKKFILNVPGVHNALNALSIISLLFEMGYEKDLVLEAFSDFSLPKRRFD-ISYNENDIVI 306

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY+HT   ++ +L   ++     +I ++F         +       AL LAD   +T+
Sbjct: 307 IDDYSHTPVEIKSLLSTAKSVFKDKKITIIFQPHRYSRLKREWKNFSEALSLADKIYITE 366

Query: 418 DNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEM------LNKQDVL 462
                E    I A  I+  I   I    + E ++               D++
Sbjct: 367 VYGAFESKNGISARLIVEKINNAIFVQEKEELLQILPSEPGVYIFAGAGDII 418


>gi|312885132|ref|ZP_07744816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367205|gb|EFP94773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 441

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 140/384 (36%), Gaps = 53/384 (13%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V +   +L   +    + S  P  VV +         +    K    ++A+TG++G
Sbjct: 71  ADLVVTNPGIALATPEIQQVLASGIP--VVGDI-----ELFAWDNDKP---VIAITGSNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V  +  Q    +GL     G                        AL  L  Q     
Sbjct: 121 KSTVTDWTGQALSAAGLDVAVGGNIGV-------------------PALDLLQHQ-ADIY 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +K     F NL  DH+D +++   Y NAK+R+F+         I
Sbjct: 161 VLELSSFQLE--TTSSLKSKVAVFLNLSEDHMDRYRSMDDYRNAKLRIFDN----ADVRI 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD  +  +     ++     S+  +  F     V    + +  T+  +         
Sbjct: 215 VNADDIATYPL----KDSSYLEFSLDKKTDF----AVTTQDDVEFFTLQGKKVLSTSEIS 266

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   V N LV   L  ++G+D    L  ++    +  R + V  N     +    A  
Sbjct: 267 LVGRHNVSNCLVVLALLHSVGVDIERALPVIKSYSGLTHRCQVVLDNGGIKWVNDSKATN 326

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-----IMGKIALDLADIAIVTDDNP 420
             S +  L  +R +     ++V G     D  +       +  ++     D       +P
Sbjct: 327 LASTKAALTGLR-MEGKLFLLVGGVSKGADFSELAPILKNLNVQLCCFGQDGDAFMSLHP 385

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGN 444
            ++  E I  EIIH I G +++G+
Sbjct: 386 SAKRFESI-NEIIHWISGQMKRGD 408


>gi|288939892|ref|YP_003442132.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
 gi|288895264|gb|ADC61100.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
          Length = 458

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 151/470 (32%), Gaps = 69/470 (14%)

Query: 35  SDSRHIQAG-----------WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +DSR    G            +FV           F P   A  A  +VVS    L +  
Sbjct: 44  TDSRERPPGLDVLQSELPEVAVFV---------GGFDPDVFAA-ATELVVSPGVPLAEPL 93

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                   +  V +   F     +         + A+TG++GKS+V + V  + + +G  
Sbjct: 94  IRQAIARGVPAVGDIELFAREIHA--------PLCAITGSNGKSTVTTLVGLMARLAGQR 145

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G                     L + +  L +  V    VE SS  L+   +  ++
Sbjct: 146 VAVGG--------------------NLGEPVLDLLAPDVERYVVELSSFQLE--TVPSLR 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A    N+  DH+D +     Y   K R+++        A++  DD     + +     
Sbjct: 184 ADAAVVLNVSADHLDRYAGLDDYARTKARIYQG----ARIAVVNRDDPIVAAMPRDPERE 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L V     F            Q     +          LPG   + NAL A  L  
Sbjct: 240 IGFTLGVPEGSDFGVRVLEGQSWICQGEEPILP----TAAIRLPGRHNLANALAALALAQ 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSG 382
           A  I  A   E L     +P R EFV   + G R Y D       +    L+ +      
Sbjct: 296 ASAIPMAGACEALRVFPGLPHRSEFVAERA-GARWYDDSKGTNPGATIAALEGLIPEDGS 354

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             +V+   G  +     P+   +      + ++  D P       + A  + G    I  
Sbjct: 355 GRVVLIAGGEGKGADFAPLRAAVERAARAVVLIGRDAP-------LIASALDGTVPLIRA 407

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            +   A+  A E +   D ++++     +  +  N E +  V  + +R +
Sbjct: 408 TDMDAAVALAAEHIEPGDCVLLS-PACASFDMFDNYEHRGRVFAEAVRRL 456


>gi|121728371|ref|ZP_01681400.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|147675354|ref|YP_001217902.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O395]
 gi|172047586|sp|A5F5M8|MURC_VIBC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121629362|gb|EAX61793.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|146317237|gb|ABQ21776.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 486

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 145/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA   +   A+++   S       I    P +     ++        + A  +  +H
Sbjct: 64  ADKGATIFIGHEAHNVAHASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRH 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 124 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 175 IAEADESDASFL---------------HLQPMVTIVTNIEADHMDTYGGDFENLKQTFID 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + Q T
Sbjct: 220 FLHNLPFYGQAILCIDDPVIRELIPRVSR---QVITYGFSEDADVRIENYRQNGQQGQFT 276

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +  +GK + D    +PG     NA  A  +     I    +L  +        RF+ +G 
Sbjct: 277 VVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGE 336

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +K  R      R++++F                  L
Sbjct: 337 FETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVL 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNK 458
           +  D+ ++ D     E P  I       +   I    +I+ I              +L  
Sbjct: 397 EQVDVLLMLDVYAAGEKP--IAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQD 454

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 455 GDLVLTQGAGD 465


>gi|325856498|ref|ZP_08172187.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola CRIS 18C-A]
 gi|325483467|gb|EGC86440.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola CRIS 18C-A]
          Length = 458

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 127/361 (35%), Gaps = 41/361 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ ++    I  +S L          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHLDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S     V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSDRSDFVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K    I+     +    MK+    G +V          H + V               
Sbjct: 214 IQKGGALIL-----HKGLEMKQHVQEGVKVYEYSRNDGDFHAENVRIADGTITFDFISPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++  D     P    + N + A  +    G  +  +   ++    V  RF+F   NSR  
Sbjct: 269 ENVKDVELGQPIPINIENGIAAMAMAQLNGCTANELRRGMKTYGGVDRRFDFKIKNSRH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DYAH    +    K+++ +   R + V+F                 AL   D  I+
Sbjct: 328 VFLSDYAHHPKEILQSAKSLKELYPDRKVTVIFQPHLYSRTRDFYKDFAGALSHFDEVIL 387

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T+  P  E+P        I   +  G+    I+K + ++ +R         DVLVV G G
Sbjct: 388 TEIYPAREEPIPGVTSSLIYDNLRPGVEKQMIKKDDVLDFVR-----SRDFDVLVVLGAG 442

Query: 469 H 469
           +
Sbjct: 443 N 443


>gi|262376991|ref|ZP_06070217.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
 gi|262308029|gb|EEY89166.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
          Length = 448

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 134/401 (33%), Gaps = 50/401 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE IV+S     +        N  I VV   +        R   K    I+A+TG++ KS
Sbjct: 66  AEEIVISPGLDPKLPEIQAAINKGIPVVSEIQIL-----RRATDKP---IVAITGSNAKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + +  +   +G      G                     L +    L+        +
Sbjct: 118 TVTTLIGLMAADAGKKVAIGG--------------------NLGRPALDLTKDDPELYIL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +        N+  DH+D H     Y  AK R+F+ +       +  
Sbjct: 158 ELSSFQLE--TTSNLAAEVAVVLNMSEDHLDRHGDMMGYHTAKHRIFQGV----KKVVYN 211

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            DD+ ++ ++         + S G     ++   +    +          +        +
Sbjct: 212 RDDSLTRPLVPDV----TPIQSFGLNAPDMNQYGILKDTDGSIWLARGRERLLKSTEMYM 267

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V NAL    L  AIG+    +L  L+    +  R EFV    +G R Y D   T+
Sbjct: 268 QGTHNVANALACLALGEAIGLPLESMLNTLKTFKGLEHRCEFVK-EVQGVRYYNDSKGTN 326

Query: 367 --NSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +L  +      I   G  + +   G  + Q  + +   ++       ++ +D P   
Sbjct: 327 IGATLAALDGLGMAIEAQGGKVAIILGGQGKGQDFKALRESLSKYAKVAVLIGEDRP--- 383

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +    I G    I   +  +A+    +     DV+++
Sbjct: 384 ----VIEAAIAGTIELIHADSLQQAVEICQKHTQAHDVVLL 420


>gi|218768199|ref|YP_002342711.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis Z2491]
 gi|121052207|emb|CAM08530.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis Z2491]
 gi|319410446|emb|CBY90806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase (murein peptide ligase)
           [Neisseria meningitidis WUE 2594]
          Length = 458

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 120/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL         G+D     E L     
Sbjct: 265 A----DGSFDVLLDGKKAGHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                 +L  AD            D +   AE +  + G +  G   +A +   ++    
Sbjct: 380 KAALPASLKEADQVFC---YAGGADWD--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|304411645|ref|ZP_07393257.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|307306303|ref|ZP_07586048.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
 gi|304349833|gb|EFM14239.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|306911176|gb|EFN41603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
          Length = 439

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 134/400 (33%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  +      +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVPA--------------------LDLLHENADLFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++        +  
Sbjct: 162 ELSSFQLE--TTHSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----SRAVLFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD  +               S G    +     +      H   ++    E        
Sbjct: 216 RDDKLT------VPPEPMNQNSFGLAAPEADEWGISDSKIYHGSSEIMPITE-------V 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  L  A+G+D  ++ +       +  R E VG  +    +    A 
Sbjct: 263 SLIGSHNHANLLAAMALVDAVGVDKQVMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +    L  +        I++   G  +    +P+   +A       ++T       D
Sbjct: 323 NVGATVAALDGLSDHLG--DIILIAGGDGKGADFKPLGVALAKVTH---LITL----GRD 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +KI A       G ++      A+  A E+    D++++
Sbjct: 374 GKKIAAL----KDGAVKVDTMAAAVTKAAELATSGDIVLL 409


>gi|219670366|ref|YP_002460801.1| FolC bifunctional protein [Desulfitobacterium hafniense DCB-2]
 gi|219540626|gb|ACL22365.1| FolC bifunctional protein [Desulfitobacterium hafniense DCB-2]
          Length = 459

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 137/391 (35%), Gaps = 55/391 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--------TISSFAQDNRLTTPSP 167
            ++ + GT+GK S      +I + +G                  TI+         T   
Sbjct: 65  RVVHIGGTNGKGSTTMMTAEILEDAGYRVGVFTSPHLHDYRERITINGEMIPKGEVTRLI 124

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG---------------------IKLIA 206
             L   L  L  +GV H +    +  +                            +K + 
Sbjct: 125 QILRPHLEELVQKGVEHPTEFEVNTAMALMYFADQKVDLVLLEVGLGGAIDSTNVVKPLI 184

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNA 263
              TN+G DH+DY   T +     K  +      K     + A D       + K+A   
Sbjct: 185 SVITNVGMDHMDYLGETYEEIAGVKAGII-----KAGAITVTAADRPEVLNVIRKKAQEM 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +  VG     +  +   +   +Q+  ++ + G        L GE QV NA  A  +C
Sbjct: 240 NSPLWVVG---DDVRWEIRWSGELEQEFDLAGLRGAYNKLRLRLVGEHQVVNAATAVTVC 296

Query: 323 IAI----GIDSA--LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +    G++     + E L K     GR E +    +   + +D AH  +    + K +
Sbjct: 297 ELLKFEYGMNLERRNIYEGLRKAVWP-GRLELLSLKPK---VLIDGAHNVDGAHALAKAL 352

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHG 435
                 R+++  G  GD++   R  +  I + LAD  I+T  N PRS + E +   +   
Sbjct: 353 NIFQRQRLVLCLGMLGDKE---REKVVDILVPLADEVIITKPNSPRSGNWEYLHELVKEK 409

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               +       A+  A   L+K+D+L V G
Sbjct: 410 GKPVLTIEEPRLAVEEAFRRLDKEDMLCVTG 440


>gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 441

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 151/388 (38%), Gaps = 50/388 (12%)

Query: 83  SATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           S  + SN PIL     +K   +S  A  L     + I+AV+GT+GK++V   + +I + +
Sbjct: 65  SPGVYSNIPILKKARKQKIKIMSELAFSLENSKYKKIMAVSGTNGKTTVTDLISKIIKAA 124

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              S   G                        A   L +   T +++E SS+ L      
Sbjct: 125 HKDSIVSGNIG------------------CPLADKALKTTETTFITMELSSYQLGD--TP 164

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +       N+  DH++YH+T +AY  AK  +F          +I  DD   +++ ++ 
Sbjct: 165 DFRPAISVLLNITPDHLEYHKTMKAYLRAKENIFINQ-RDGDFTVINYDDKICRKIFEKT 223

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFPLPGEFQVYNALVA 318
             A   V+            K    ++   + I+V+ K +       + G   + N L A
Sbjct: 224 KAA---VIFFS-----KTPLKKGVFYDSGSIVINVKEKHYVIKPKINIVGTHNIENILAA 275

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS--LEMILKNI 376
                A G+  A++ + + K   V  R EFV T +      VDY + S S  ++     +
Sbjct: 276 VAASYAAGVKPAVIEKIVSKYKGVEHRIEFVKTLNG-----VDYYNDSKSTNIDSTRVAL 330

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            +      I++   G D+     P+   +   +  I ++       E  +KI+ ++    
Sbjct: 331 ESFDKN--ILIIMGGRDKGVPYTPLKELVKQRVKLIFLI------GEASDKIKKDL--NG 380

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             F++ GN   A++       + D+ ++
Sbjct: 381 ASFVDCGNMENAVKQIFRTAVRADIALL 408


>gi|120600140|ref|YP_964714.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
 gi|120560233|gb|ABM26160.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
          Length = 464

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 110/358 (30%), Gaps = 22/358 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +     +      +     S  ++ +
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFL--IGGVPQNFGVSACLGESAFFVVE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 162 ADEYDSAFFDKRSKFVHYH------------PRTLVINNLEFDHADIFADLAAIQKQFNH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P E   I   D    K+ +     +              + K +    +  +V 
Sbjct: 210 LI-RTVPGEGKIIWPVDAQSVKQTIDMGCWSKQEHYHTAESITGWYGKALSDDCHCFEVF 268

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E +     + L G+  + NA++A      +G+  +  +E L +      R E +GT 
Sbjct: 269 FDGESQ-GVLEWDLIGQHNIENAIMAIAAARHVGVKPSAAIEALAQFIPPKRRLELLGT- 326

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--A 410
             G  +Y D+AH   ++   LK +R       I+V                 +A  +  A
Sbjct: 327 VNGISVYDDFAHHPTAIATTLKGMRAKVGQSKIIVVLEPRSNTMKSGVHKDTLAYSMMQA 386

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D A +            ++  +   +   +      E +          D +VV   G
Sbjct: 387 DEAFL---YQADTIDWNMKEAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVVMSNG 441


>gi|325102889|ref|YP_004272543.1| UDP-N-acetylmuramate/alanine ligase [Pedobacter saltans DSM 12145]
 gi|324971737|gb|ADY50721.1| UDP-N-acetylmuramate/alanine ligase [Pedobacter saltans DSM 12145]
          Length = 453

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 123/377 (32%), Gaps = 50/377 (13%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQ 158
           + L L +  ++       +AV GT GK++ +  +  + +  G      +G  S   ++  
Sbjct: 105 QILGLLSRGMF------TIAVAGTHGKTTTSCLITHLLRHGGNQCSAFLGGISV--NYYT 156

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +                        +   +   D+  L  +       T++  DH+D
Sbjct: 157 NLIIGENE-------------------VMVVEADEYDRSFLT-LHPNIAVITSMDADHLD 196

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
            +  +     +   LF   +                  +++  +    V +   +     
Sbjct: 197 IYGDKSHLTES-FELFASQVDSGGTV-----------FLRKGLDVKQSVSTYAIEQDA-D 243

Query: 279 LKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            K V       +        + +    +  LPG+  + NA+ A  + + +GI    +   
Sbjct: 244 AKAVNIRVEDGEFRFDFSNDEIEMKDLVLGLPGQHNIENAVAAIQVALKMGISQQDIKSG 303

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDR 394
           L+    V  RFE++   +       DYAH    L    + +RT   + +   +F      
Sbjct: 304 LKSFKGVKRRFEYI-VKTDAFVYIDDYAHHPEELRACFRAVRTLYPTRKFTAIFQPHLFT 362

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRIEAIRTA 452
                       L   D  I+ +  P  E P E I ++ ++  I    +K    + +   
Sbjct: 363 RTRDFIDGFAEVLSSVDELILLEIYPARELPIEGINSQFLLDKITLENKKLLTKDEVLKF 422

Query: 453 IEMLNKQDVLVVAGKGH 469
           I+    + +LV  G G 
Sbjct: 423 IKNSEPE-LLVTVGAGD 438


>gi|289704954|ref|ZP_06501369.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus SK58]
 gi|289558290|gb|EFD51566.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus SK58]
          Length = 495

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/389 (18%), Positives = 119/389 (30%), Gaps = 48/389 (12%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A  + G     +LAV GT GK++ +S        +G       PT  + +         
Sbjct: 112 LALAMRGH---RVLAVAGTHGKTTTSSMAAMAFSDAGWD-----PTFAVGAAVAGLGTNA 163

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            +            S G                         G  T +  DH+D++ T++
Sbjct: 164 RAGRGEWFIAEADESDGTLVNYPS----------------TIGIVTTVEADHLDHYGTEE 207

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLK 280
           A      R F   LP  +   +             A  A       V++ G   +     
Sbjct: 208 AVHQV-FRDFAGGLPAAAQGGVLVACLDDAGAADLAAWARDHAAADVVTYGTATRDGVTP 266

Query: 281 KVCAIH---------NKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +               Q+ T    +G +      +PG     NA       +  G+   
Sbjct: 267 DLLVTDLAVEPGETGVGQRATFRMADGPERTLHLQVPGRHNALNAAAVVLAAVRAGMAFE 326

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFG 389
             +  +E       RFEF G  +RG R++ DYAH    +   +   R +    R+ V+F 
Sbjct: 327 AAVRGVEAFRGTARRFEFRGA-ARGVRVFDDYAHHPTEVAAAVSAGRAVAGDARVHVLFQ 385

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIP-GFIEK 442
                           AL  AD   V       E+P        I + +  G     +  
Sbjct: 386 PHLFSRTRDFAAEFAAALSGADAVRVLPVYAAREEPMPGVDSSLIASRLTTGAAEDRVVA 445

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +R EA+R+        DV++  G G  T
Sbjct: 446 EDRAEAVRSVAAGAETGDVVLTMGAGDVT 474


>gi|217971631|ref|YP_002356382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS223]
 gi|217496766|gb|ACK44959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS223]
          Length = 439

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 132/400 (33%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  +      +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVPA--------------------LDLLHENADLFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++        +  
Sbjct: 162 ELSSFQLE--TTHSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----SRAVLFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD  +               S G    +     +      H   ++    E        
Sbjct: 216 RDDKLT------VPPEPMNQNSFGLAAPEADEWGISDSKIYHGSSEIMPITE-------V 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  L   +G+D  ++ +       +  R E VG  +    +    A 
Sbjct: 263 SLIGSHNHANLLAAMALVDVVGVDKQIMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +    L  +        I++   G  +    +P+   +A       ++T       D
Sbjct: 323 NVGATVAALDGLSDHLG--DIILIAGGDGKGADFKPLGVALAKVTH---LITL----GRD 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +KI A       G +       A+  A E+    D++++
Sbjct: 374 GKKIAAL----KDGAVRVETMAAAVTKAAELATSGDIVLL 409


>gi|332518981|ref|ZP_08395448.1| UDP-N-acetylmuramate/alanine ligase [Lacinutrix algicola 5H-3-7-4]
 gi|332044829|gb|EGI81022.1| UDP-N-acetylmuramate/alanine ligase [Lacinutrix algicola 5H-3-7-4]
          Length = 450

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 118/361 (32%), Gaps = 50/361 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++  S +  I +        +  T+ +   +++               S L
Sbjct: 115 LAVAGTHGKTTTTSILGHIMREC-----NVPLTAFLGGISENYS-------------SNL 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     VEA         L          T++  DH+D +              ++L
Sbjct: 157 ILNGDEVSVVEADEFDRSFLTLS---PDLACITSMDADHLDIYGDASELVKTFEDFAKKL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVE 296
            P     +                    + ++ G +    +  +   I N      + + 
Sbjct: 214 KPNGKLFVKNG--------------LPLKGITYGIEDDADYAVQNIKIENGTYVFDVKMP 259

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                   F LPG   + NAL+A  + +  G+    + + L     V  RF +    +  
Sbjct: 260 NTILKQVKFNLPGRHNLSNALIALAMAVEYGLPKPQLAKALASYKGVKRRFTYQ-IKTNE 318

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH    ++ + + +R +     ++VVF            +    +L + D  +
Sbjct: 319 LVFIDDYAHHPEEIKAVHQAVREMYPKDEVLVVFQPHLFSRTKDFGVEFAQSLSMFDEIL 378

Query: 415 VTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + D  P  E P +      +  +I +     IEK   I  I+      +K  +++  G G
Sbjct: 379 LLDIYPARELPIEGINSKWLLNKINNPKKQLIEKSQIINKIK-----ASKSKIILTLGAG 433

Query: 469 H 469
            
Sbjct: 434 D 434


>gi|328881789|emb|CCA55028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           venezuelae ATCC 10712]
          Length = 474

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 83/402 (20%), Positives = 151/402 (37%), Gaps = 49/402 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I + +GL +  +G               
Sbjct: 103 ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIG------------ 150

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 ++   + L  +    ++VE SS+ L  H    +++ + +  NL  DH+D+H + 
Sbjct: 151 ------VSLLDAVLGEETYDVLAVELSSYQL--HWAPSVRVHSAAVLNLAPDHLDWHGSM 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKV 282
           +AY   K R+++     +   +    D  ++++++ A    GCR +             V
Sbjct: 203 EAYAADKGRIYQG---NQVACVYNVADKVTEDLVREADVEEGCRAIGFTLGTPGPSELGV 259

Query: 283 CAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                  +  +    K    L        P    + NAL AA L  A G+++  V + L+
Sbjct: 260 VEDLLVDRAFVPDRQKSAQELAEVSDVQPPAPHNIANALAAAALARAFGVEAKAVRDGLK 319

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                P R E V      G  YVD +  +N+          + +   IV    G  +   
Sbjct: 320 AFRPDPHRIELVEEVQ--GVTYVDDSKATNTHAAEAS----LAAYDPIVWIAGGLAKGAT 373

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIR 450
              ++ K A  L    ++  D         IR  +    P   +   +R       EA+R
Sbjct: 374 FDELVEKSAKRLRGAVLIGADR------ALIREALARHAPEVPVVDLDRTDTGAMSEAVR 427

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            A  +    D +++A     ++ + TN  K+     D +R +
Sbjct: 428 EAARLARAGDTVLLA-PACASMDMFTNYNKRGEAFADAVRAL 468


>gi|332518984|ref|ZP_08395451.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044832|gb|EGI81025.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
          Length = 445

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 126/354 (35%), Gaps = 43/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++ AS    I  +       +G    I                     
Sbjct: 104 ATIVGITGSNGKTTTASLTHHILSQ----ELNVGLAGNIGDSFAK--------------- 144

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
             +  +   +  +E SS  LD   +   K      TN+  DH+D +    + Y N+K R+
Sbjct: 145 -QILEKNYKNYVLEISSFQLD--GIIDFKPNIAIITNITPDHLDRYDYKFENYINSKFRI 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 KE   I  ADD      +K  +     +L      K     +  A    + + I
Sbjct: 202 ALNQT-KEDYLIYDADDEVITNWLK-TNTIQSTLLPFSLTKKI----ENGAYLENENIKI 255

Query: 294 SVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +++ K          L G+  V NA+ A+ +   + I    + E LE  H V  R E V 
Sbjct: 256 TIDNKHIIMPTKNLALEGKHNVKNAMAASTVSHLLKIRKQTIRESLENFHGVEHRLEQVL 315

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             ++   I    A   N        + ++ +  + +V   G D+      +   I   + 
Sbjct: 316 KINKVQYINDSKATNVN---ATYYALESMDAPTVWIV--GGTDKGNDYTELFPFINEKVK 370

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I  +  DN      EK+     + +   +E     EA++ A ++    D +++
Sbjct: 371 AIICLGIDN------EKLLENFGNMVDVIVETQFMSEAVKIAYKIAEAGDNVLL 418


>gi|118581149|ref|YP_902399.1| Mur ligase middle domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118503859|gb|ABL00342.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379]
          Length = 406

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 116/317 (36%), Gaps = 25/317 (7%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L   R Y K     +AVTG+ GK+S   F+ +I                I       +  
Sbjct: 21  LICRRFYDKTTA--IAVTGSCGKTSTTHFLGKILSDRDSCR--------IGILFNCRKAI 70

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             +   +  +  ++  +      V     G    RL  ++   G  T++G+DH    +T 
Sbjct: 71  IKNLRRVNSSHRFVLQE------VGVEGTGCMNERLPLLRPRIGIVTSVGQDHYCNFRTL 124

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKK 281
           +A    K +L E  LP+   A++ ADD +   V+  A  +  RVL+ G   +        
Sbjct: 125 EATAFEKGKLIE-FLPESGVAVLNADDPH---VLAMARRSKARVLTYGLWEEADVRGSDI 180

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            CA   +  + ++ +G+       L G     + L A    +A GID       L  +  
Sbjct: 181 RCAWPERLSLAVTYQGESVRIETGLFGSLLASSILAAVCGALAAGIDLKQCAASLHAVES 240

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            P R     T+ R   I         ++  +L+ +    + R  VVFG   D        
Sbjct: 241 FPRRMTIHATSQRAWYICDTAKAPYWTVAKVLEPMTDAAAPRKTVVFGSFSDTSGSSSSK 300

Query: 402 ---MGKIALDLADIAIV 415
              M + AL++AD    
Sbjct: 301 YRSMAREALNVADRVFF 317


>gi|284031635|ref|YP_003381566.1| Mur ligase middle domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283810928|gb|ADB32767.1| Mur ligase middle domain protein [Kribbella flavida DSM 17836]
          Length = 563

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 131/386 (33%), Gaps = 44/386 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++AVTGT+GK++ +  +  I + +GL    +G +ST   +     +        +
Sbjct: 156 RPKVPVVAVTGTNGKTTTSRMIAHIGRAAGL---HVGWSSTDGVYFDGELVEYGDFSGPS 212

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNA 229
            A   LS  G+     E +  G+ +  +          TN+  DH+      T       
Sbjct: 213 GAGRVLSQPGIQLAVTETARGGILRRGIGVATNDVSVVTNVSADHLGLGGIDTVDQLAEV 272

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  +  ++       ++  DD  +  +      +  +            ++ V     + 
Sbjct: 273 KAVI-TKITRPRGWCVVNGDDPRTFAMR---LGSPAKSWVFSRDPDSPSIRTVLDEGGRA 328

Query: 290 QVTIS---------------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              +                V+  D          + V NAL AA   + +G+  A V+E
Sbjct: 329 TTVLDGFVTVLDNASDAEPLVKVVDIPMTLSGLSHYNVENALAAASAALGLGLPRAAVIE 388

Query: 335 HLEKLHVVPG---RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFG 389
            L           R        R   + +D AH    LE +L+ +  +    GR+++  G
Sbjct: 389 GLTSFSPNENNPGRMNMYSL--RDFTVVIDLAHNEAGLEALLEIMNGVRRPGGRLLLALG 446

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHG--------IPGF 439
             GDR       MG I    AD  ++   D   R     ++ A    G        +P +
Sbjct: 447 SPGDRSDEMVSAMGAIGARGADRVVIGHKDTYLRGRPSAELDAVFREGTSSVGVDDVPSY 506

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVA 465
             + +  +A+   +      DV+ V 
Sbjct: 507 PTELDAAKAL---VAEAGPGDVVAVM 529


>gi|282878010|ref|ZP_06286818.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccalis ATCC
           35310]
 gi|281299845|gb|EFA92206.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccalis ATCC
           35310]
          Length = 457

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 122/360 (33%), Gaps = 40/360 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ ++    I  +S      +   + +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQS-----HVDCNAFLGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    ++ +EA       H L   +      T+   DH+D + T++AY  +  R +  L
Sbjct: 158 LSDASDYIVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTTL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II+ D       MK A   G  +          H + +   +           
Sbjct: 214 IQPGGALIIHRDLE-----MKPAVQEGVSMYDYSRDKGDFHAENIEIKNGHITFDFISPL 268

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++ +      P    + N + A  +    G  +  +   +   H V  RF+F   N R  
Sbjct: 269 ENVEGVELGQPIPINIENGVAAMAMAQLNGCTAEELRYGMSTYHGVERRFDFKIKNDRH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +    K++R +   R +  +F                 AL   D  I+
Sbjct: 328 VLLSDYAHHPKEIYQSAKSLRELYHDRKVTAIFQPHLYTRTRDFYKEFAKALSQLDEVIL 387

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D  P  E P      + I  E+       I K   ++ ++         DVLV+ G G 
Sbjct: 388 CDIYPAREQPIKGVTSQLIYDELTCKEKSMIHKEEVLDLVKR-----RDFDVLVILGAGD 442


>gi|300114771|ref|YP_003761346.1| UDP-N-acetylmuramate [Nitrosococcus watsonii C-113]
 gi|299540708|gb|ADJ29025.1| UDP-N-acetylmuramate [Nitrosococcus watsonii C-113]
          Length = 463

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 111/364 (30%), Gaps = 33/364 (9%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK-------FLSLFASRLYGKHPE 115
           AI +G  A  +    +L      +    P   V++               A ++      
Sbjct: 48  AIREGYSAAALDPPPNLVVIGNALSRGNP--AVEHVLAQGLSYISGPQWLAEQIL--QGR 103

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +LAV GT GK++ +S +  I + +G     +     I    Q+          L ++  
Sbjct: 104 WVLAVAGTHGKTTTSSLLAWILEYAGHRPGYL-----IGGVPQN----FGISARLGRSPY 154

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           ++        +          +R            NL  DH D     +A    +     
Sbjct: 155 FVVEADEYDTAFFDKRSKFIHYR-----PRTLILNNLEYDHADIFPHLEAIQQ-QFHYLV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
             +P     ++ + D     V+         V+++   G     L       +     + 
Sbjct: 209 RTVPNNGLILVPSGDKALATVLNM--GCWTPVMNMDIAGGISSALAASAVADDGSDFEVW 266

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            E        +PL G   V N L A G     G+      + LE+   V  R E  G   
Sbjct: 267 YENSCQGRVRWPLLGHHNVANGLAAIGAAHHSGVPIDQACQALERFQGVRRRLEIYG-KV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLAD 411
            G  IY D+AH   ++   L  +R       I+            G        AL LAD
Sbjct: 326 NGVTIYDDFAHHPTAISKTLAGLRARVGKARIIAVLEPRSNTMKLGIHKDSLAPALALAD 385

Query: 412 IAIV 415
             ++
Sbjct: 386 RVLI 389


>gi|323491031|ref|ZP_08096223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
 gi|323314695|gb|EGA67767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
          Length = 441

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 140/399 (35%), Gaps = 58/399 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +         +    K    ++A+TG++GKS
Sbjct: 71  ADLVVANPGIALATPEIQQVLAANIPVVGDI-----ELFAWQVDKP---VIAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V  +  Q+ + +GL     G     +                                +
Sbjct: 123 TVTDWTGQVAKATGLKVGVGGNIGVPALDLLTLDADL--------------------YVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +F NL  DH+D +Q  + Y  AK+R+F+         I+ 
Sbjct: 163 ELSSFQLE--TTSSLAPKAAAFLNLTEDHMDRYQGMEDYRQAKLRIFDH----AQSCIVN 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFP 305
           A+D   K+     +N      S+    +F  +      +      +++ GK         
Sbjct: 217 AED---KQTYPDQNNKHLVEFSLTDSTQFSVIDCDGIEY------LAMNGKQIIPAAELS 267

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   V NALV   L   +G+D    L+ L+  + +  R + V  N RG +   D   T
Sbjct: 268 LVGRHNVANALVVLALLSQVGVDIEKGLDALKSYNGLTHRCQVVADN-RGIKWVNDSKAT 326

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           + +  M       +     ++V G G   D  +        LD  D+ +        ED 
Sbjct: 327 NVASTMAALAGLELAGTLYLLVGGMGKGADFSQLAP----VLDKLDLQLCC----FGED- 377

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + +   P      +  E I+     +   D++++
Sbjct: 378 ---GDQFMSLHPSAQRFSSMEEIIQWLSPKVTAGDMVLL 413


>gi|238019064|ref|ZP_04599490.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
 gi|237864319|gb|EEP65609.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
          Length = 456

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 16/292 (5%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS ++        + A         +   + I     N+  DH+  H+T + Y  AK R+
Sbjct: 147 LSEVAYSMPADGFLVAELSSYQLETIKHFRPIGAIMLNITADHLARHKTMENYIAAKERI 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           FE  L  +   ++  DD    ++  R  +   ++          +  K      K  +  
Sbjct: 207 FENQLSTD-FMVLNIDDPIVADMEHRVLSHILKISQHQVVPNGAYYDKGQCYVTKDGIAT 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            V G D      +PG   + N L    L   +G+ +  +   + + H V  R E V T  
Sbjct: 266 PVIGSD---DIHIPGSHNIENILTVIALTYVLGVPAETIHRIISEFHGVEHRLERVKT-I 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G   Y D   T+  ++ ++K + +       V+   GG           ++  D     
Sbjct: 322 DGITFYNDSKATN--VDSVVKALESFDQ---SVILLAGGHDKMTPLEDFMQLVKDHTKAV 376

Query: 414 IVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   +   R E   K       G+       +  +A+    ++ ++ D++++
Sbjct: 377 IFMGEAADRFEAAAK-----EAGVQPIYRASSMKDAVEQGYKLADQGDIVLL 423


>gi|224024604|ref|ZP_03642970.1| hypothetical protein BACCOPRO_01331 [Bacteroides coprophilus DSM
           18228]
 gi|224017826|gb|EEF75838.1| hypothetical protein BACCOPRO_01331 [Bacteroides coprophilus DSM
           18228]
          Length = 458

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 106/313 (33%), Gaps = 29/313 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E  L V GT GK++ ++    +  +S      IG  + +   +++               
Sbjct: 112 ERGLCVAGTHGKTTTSTMAAHLLHQS-----HIGCNAFLGGISKNYGT------------ 154

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L S     V +EA       H L      A   T    DH+D + T++AY  +  R +
Sbjct: 155 NLLLSDKSDFVVIEADEFDRSFHWL---TPYATVITATDPDHLDIYGTEEAYLES-FRKY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-I 293
             L+  +   II+   A   +V       G    +   +    H   +     + Q   I
Sbjct: 211 TSLIRPDGFLIIHKGLAMQPDV-----QPGVTTYTYSIEEGDFHATNIRIGGGEIQFDYI 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S  G   D    +P    + N + A  L    G  +  +   +     V  RF+F   N 
Sbjct: 266 SPLGNICDIRLGVPVYVNIENGIAAMALAQIAGATAEEIKTAMASFGGVDRRFDFKIKND 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
                  DYAH    +   + +++ +   R I  VF                 +L L D 
Sbjct: 326 HLA-FLSDYAHHPEEIRKSITSLKALYPDRKITAVFQPHLYTRTRDFYKEFAESLSLLDE 384

Query: 413 AIVTDDNPRSEDP 425
            I+ D  P  E P
Sbjct: 385 VILLDIYPARELP 397


>gi|89895933|ref|YP_519420.1| hypothetical protein DSY3187 [Desulfitobacterium hafniense Y51]
 gi|89335381|dbj|BAE84976.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 439

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 137/391 (35%), Gaps = 55/391 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--------TISSFAQDNRLTTPSP 167
            ++ + GT+GK S      +I + +G                  TI+         T   
Sbjct: 45  RVVHIGGTNGKGSTTMMTAEILEDAGYRVGVFTSPHLHDYRERITINGEMIPKGEVTRLI 104

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG---------------------IKLIA 206
             L   L  L  +GV H +    +  +                            +K + 
Sbjct: 105 QILRPHLEELVQKGVEHPTEFEVNTAMALMYFADQKVDLVLLEVGLGGAIDSTNVVKPLI 164

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNA 263
              TN+G DH+DY   T +     K  +      K     + A D       + K+A   
Sbjct: 165 SVITNVGMDHMDYLGETYEEIAGVKAGII-----KAGAITVTAADRPEVLNVIRKKAQEM 219

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +  VG     +  +   +   +Q+  ++ + G        L GE QV NA  A  +C
Sbjct: 220 NSPLWVVG---DDVRWEIRWSGELEQEFDLAGLRGAYNKLRLRLVGEHQVVNAATAVTVC 276

Query: 323 IAI----GIDSA--LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +    G++     + E L K     GR E +    +   + +D AH  +    + K +
Sbjct: 277 ELLKFEYGMNLERRNIYEGLRKAVWP-GRLELLSLKPK---VLIDGAHNVDGAHALAKAL 332

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHG 435
                 R+++  G  GD++   R  +  I + LAD  I+T  N PRS + E +   +   
Sbjct: 333 NIFQRQRLVLCLGMLGDKE---REKVVDILVPLADEVIITKPNSPRSGNWEYLHELVKEK 389

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               +       A+  A   L+K+D+L V G
Sbjct: 390 GKPVLTIEEPRLAVEEAFRRLDKEDMLCVTG 420


>gi|116630054|ref|YP_815226.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri ATCC
           33323]
 gi|238853758|ref|ZP_04644124.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri 202-4]
 gi|282851267|ref|ZP_06260632.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           224-1]
 gi|311110319|ref|ZP_07711716.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri MV-22]
 gi|122273009|sp|Q041T4|MURC_LACGA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116095636|gb|ABJ60788.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri ATCC
           33323]
 gi|238833567|gb|EEQ25838.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri 202-4]
 gi|282557235|gb|EFB62832.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           224-1]
 gi|311065473|gb|EFQ45813.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri MV-22]
          Length = 437

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 131/418 (31%), Gaps = 65/418 (15%)

Query: 75  SAYSLQDF-SATIRSNTPILVV-------DNTRKFLSLFASRLYGKHPENI--------- 117
           +   ++DF  A I+SN   ++V       DN      L  +  +  +P+ +         
Sbjct: 50  AGIEVKDFDPANIKSNDEQVIVKGNAFKQDNPEVAACLDKNVEWQSYPDTVEEIVQMHTS 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+GT GK+S  S +  +      +S+ IG          D+R                
Sbjct: 110 IGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR--GKGVADSRFFVYEAD--------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 159 ----------EYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G++         +       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFKDTDDFQAVNIEKTTTGSKFNVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD   F   L G+  + N      +     +    + E L        R  F   +   
Sbjct: 255 GKDLGRFEIHLFGDHSILNTTAVIAVAYTEKVPMEDIKEGLLTFKGAKRR--FAEKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R       ++VVF         K     +  L   D A 
Sbjct: 313 VSVIDDYAHHPTEMRATIQAARQKFPDKELVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   ++++ IPG      + I  +       +K  V+V  G G 
Sbjct: 373 VTPIYASAREASGDISSEDLVNNIPGSEVIDLDNIADLTK-----HKNAVVVFMGAGD 425


>gi|152998950|ref|YP_001364631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS185]
 gi|151363568|gb|ABS06568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS185]
          Length = 439

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 132/400 (33%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  +      +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVPA--------------------LDLLHENADLFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++        +  
Sbjct: 162 ELSSFQLE--TTHSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----SRAVLFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD  +               S G    +     +      H   ++    E        
Sbjct: 216 RDDKLT------VPPEPMNQNSFGLAAPEADEWGISDSKIYHGSSEIMPITE-------V 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  L   +G+D  ++ +       +  R E VG  +    +    A 
Sbjct: 263 SLIGSHNHANLLAAMALVDVVGVDKQIMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +    L  +        I++   G  +    +P+   +A       ++T       D
Sbjct: 323 NVGATVAALDGLSDHLG--DIILIAGGDGKGADFKPLGVALAKVTH---LITL----GRD 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +KI A       G +       A+  A E+    D++++
Sbjct: 374 GKKIAAL----KDGAVRVETMAAAVTKAAELATSGDIVLL 409


>gi|311087110|gb|ADP67190.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087656|gb|ADP67735.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 161/452 (35%), Gaps = 56/452 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           I + I  GA   +  S  ++++      S+ I SN   ++    R    L  + +     
Sbjct: 25  IKKLINLGATIYLQHSEKNIKNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILM 84

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
                +AV+GT GK++  S +  I   SGL    I  G   +I+S+A+    +       
Sbjct: 85  SFKKGIAVSGTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSSSYFITEAD 144

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L                        +       TN+  DHID++          
Sbjct: 145 ESDASFL-----------------------YLNPNIIIVTNIESDHIDHYDNSFKKLKQT 181

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
             +F + +     AI+  D+    +++    N  C++++ G+ +   + +      +   
Sbjct: 182 FLIFLKKITLYGTAIVCIDNNAICDIL---TNLKCKIITYGFNKNADVRIFLYKQNNFIG 238

Query: 290 QVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              I +   K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF
Sbjct: 239 HFYIILKNNKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMIASLKNFQGTCRRFEF 298

Query: 349 VG--------TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
           +G               +  DY H    L   +K IR +  +  +I++F           
Sbjct: 299 LGFLSIDQGFDKRANCMLIDDYGHHPTELSETIKTIRISWPNKNLIMIFQPHRYTRTYNL 358

Query: 400 PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTA 452
                  L   D+ ++      +E      D   +  +I      ++    N    + T 
Sbjct: 359 YHDFVQTLSQVDVLLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTL 418

Query: 453 IEMLNKQDVLVVAGKGHETVH---IVTNGEKK 481
           I+ L   D++++ G G+       I+    KK
Sbjct: 419 IQTLQGNDIILIQGAGNIDTIAHKILIKKTKK 450


>gi|294634491|ref|ZP_06713026.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda ATCC 23685]
 gi|291092005|gb|EFE24566.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda ATCC 23685]
          Length = 456

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 126/369 (34%), Gaps = 41/369 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMVNWILEACGYQPGFV--IGGVPGNFEVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLRAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I  A+DA  K+V+     +         +G   H +K+          ++
Sbjct: 209 -RLVPGKGRIISPANDANLKQVLAMGCWSEQEQSG---EGAAWHAQKLSPD--ASHFVVT 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+   +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGERVGEVQWSLVGEHNMHNGLMAIAAARHVGVPPAEACRALASFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLA 410
            G  +Y D+AH   ++   L  +R    G  RI+ V     +  +          AL  A
Sbjct: 322 YGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGVCKNELAPALGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAG 466
           D   +         P+ I  +++      ++  +    + T ++M        D ++V  
Sbjct: 382 DEVYLYQ-------PQHIPWQVVEVAEACVQPAHWSADLDTLVDMIVKNAQPGDHILVMS 434

Query: 467 KG-----HE 470
            G     HE
Sbjct: 435 NGGFGGIHE 443


>gi|259418779|ref|ZP_05742696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
 gi|259345001|gb|EEW56855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
          Length = 472

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 137/416 (32%), Gaps = 52/416 (12%)

Query: 65  AQGA----EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--P 114
            QGA     A++VS      Y   +       +  + V ++   F    A+  + +   P
Sbjct: 60  KQGAFEGISALIVSPGIPHLYPKPNPVVRAALSAGVPVDNDIGLFFRSVATSEWDEFDTP 119

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AVTG++GKS+  + +  I +  G +S   G                         L
Sbjct: 120 PKVIAVTGSNGKSTTVALLHHILEHVGRNSQMAGNIG-------------------RGVL 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 161 DIDPPVDGGVVVLELSSYQTDLAR--ALTPDVAVFTNLTPDHLDRHAGMGGYFAAKRRLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E  P  +   I  D+           N   RV+ V    K            K  ++  
Sbjct: 219 AEGGPDRAVIGIDEDEGLFLAGQMSEGNGDDRVIRVSSGQKLSGSAGWSVFARKGFLSEY 278

Query: 295 VEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +G+     D   +  LPG     NA  A      +G+   ++   ++    +P R + V
Sbjct: 279 RKGRQAGSIDLRDIPGLPGAHNHQNACAAYAAARTLGLAPRVIEAAMKTYPGLPHRSQRV 338

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +    +    A   +S    L   + I     I     G +++ G   + G     L
Sbjct: 339 AQANGVSYVNDSKATNVDSAAKALSAFKKIR---WIC---GGLEKEGGLEALKGATGEVL 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
               I         +  +   ++               A+  A+    + + +++A
Sbjct: 393 KAYVI-------GREAAQFAMQL---NVDAEVCTTMAAAVECAMADAGEGETVLLA 438


>gi|293365802|ref|ZP_06612508.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus oralis ATCC
           35037]
 gi|307703329|ref|ZP_07640273.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus oralis ATCC
           35037]
 gi|291315735|gb|EFE56182.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus oralis ATCC
           35037]
 gi|307623105|gb|EFO02098.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus oralis ATCC
           35037]
          Length = 444

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 107/352 (30%), Gaps = 43/352 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG   I+  +A+   +      ++   +      +FL  F            + V G  G
Sbjct: 60  QGDVEIIAGNAFRPDNNVEIAYADQNGISYKRYHEFLGSFMRDFV------SMGVAGAHG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S    +  +      +SF IG  +   S      +                       
Sbjct: 114 KTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD------------------- 154

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E   H +  H            TN+  DH DY  + +  FNA     +++        
Sbjct: 155 --EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLF 203

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           +Y +D    E+ K   NA         +G       +         T+   G++   F  
Sbjct: 204 VYGEDP---ELRKITANAPIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHI 260

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G   + NA    GL    G D  LV EHL+    V  RF     N     I  D+AH
Sbjct: 261 PTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--TVIIDDFAH 318

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|91216031|ref|ZP_01253000.1| UDP-N-acetylmuramate--L-alanine ligase [Psychroflexus torquis ATCC
           700755]
 gi|91186008|gb|EAS72382.1| UDP-N-acetylmuramate--L-alanine ligase [Psychroflexus torquis ATCC
           700755]
          Length = 448

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 124/363 (34%), Gaps = 50/363 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             LAV GT GK++ ++ +  I +       QI  T+      ++ +              
Sbjct: 114 PTLAVAGTHGKTTTSAILAHILKA-----NQIKLTAFCGGILKNYKTNYIG--------- 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G   V +EA     D+  L  +   A   T++  DH+D + T ++   A  + F 
Sbjct: 160 ----DGEEVVVIEADEF--DRSFLQ-LHPSAAVITSMDADHLDIYGTSESLTLA-FQEFS 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L+PK         D  ++ +                      ++ +   +   +     
Sbjct: 212 NLVPKGHLYANSTLDLQAQSIAVN-------------HSADYSIQHINIENGSYRFDFKS 258

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL-EHLEKLHVVPGRFEFVGTNS 353
           +     D  F LPG   ++NA  A  L I      A    + L     V  RF +V   S
Sbjct: 259 KDITLKDIQFSLPGHHNLFNAAAALCLAIDFKPSYADRFAKALASFEGVQRRFNYVY-KS 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               +  DYAH    ++ + + I       + +V+F                 +L   D 
Sbjct: 318 DFLIVIDDYAHHPKEIDAVHQAISEMHPEKKSVVIFQPHLFSRTKDFADEFAKSLAQFDE 377

Query: 413 AIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             + D  P  E+P +      +   I H     I K +    I+  I+  +++ V+V+ G
Sbjct: 378 VNLLDIYPAREEPIEGITSKYLLELIDHPKKQLILKND----IQNRIKNASEE-VIVLLG 432

Query: 467 KGH 469
            G 
Sbjct: 433 AGD 435


>gi|325280024|ref|YP_004252566.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
 gi|324311833|gb|ADY32386.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
          Length = 457

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 122/360 (33%), Gaps = 38/360 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRS--GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + V GT GK++V++    + + S  G ++F  G  +   +                  
Sbjct: 116 KAICVAGTHGKTTVSTLTAFLLKNSTVGCNAFLGGIAANFGT------------------ 157

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L  +  +++ +EA     D+  L  +       T +  DH+D ++ +     A    
Sbjct: 158 -NLLLDRNSSYIVIEADEF--DRSFL-HLSPEIAVITAMDEDHLDIYENKANLLEAFEAF 213

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             ++ P+           + K+ ++           V  +    +   +     +     
Sbjct: 214 AGQVNPQGGRL-------FLKKGLQLKQTQVTGYYGVEVKAD-CYADGLRIEQGRYVFDY 265

Query: 294 SVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              G D +  +  +PG   V NA  A  L +  G+    +   L     V  RF      
Sbjct: 266 HGRGVDIEGLILGIPGRLNVENATAAITLALEAGVQPEEIRRALPDFKGVARRFNIQVYT 325

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +   I  DYAH    +E  L+++R +     + VVF                 +L LAD
Sbjct: 326 EKTIYI-DDYAHHPREIEATLRSVREMWPDRPVTVVFQPHLYTRTRDFQEDFARSLSLAD 384

Query: 412 IAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             ++ +  P  E P   I AE I   +        + E ++  I       +LV  G G 
Sbjct: 385 RVVLLEIYPARERPIPGITAEVIRKRLTVPGNIVTKEELLQHIIPDFQGG-ILVTMGAGD 443


>gi|326779864|ref|ZP_08239129.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660197|gb|EGE45043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
          Length = 472

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 145/411 (35%), Gaps = 55/411 (13%)

Query: 71  IVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +VV++     D     A   +  P+    +      L      G+ P   LAVTGT+GK+
Sbjct: 70  LVVTAPGWQPDKPLFLAAAEAGVPVW--GDVELAWRL--RGDDGRKPAPWLAVTGTNGKT 125

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  I + +GL +  +G                     ++   + +       ++V
Sbjct: 126 TTVRMLASILRAAGLRTEAVGNIG------------------VSLLDAVVGETEYDVLAV 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E         +  
Sbjct: 168 ELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTV---ACVYN 222

Query: 248 ADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D  ++++++ A    GCR +             V       +  ++   K    L  +
Sbjct: 223 VADPATEDLVREADVEEGCRAIGFTLGAPGPSQLGVVDGILVDRAFVADRHKQAQELAEV 282

Query: 307 -----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                P    + NAL AA L  A G+  A V + L        R E V        +   
Sbjct: 283 SDVDPPAPHNIANALAAAALARAFGVQPAAVRDGLRAFRPDAHRIEHVADLDEVRYVDDS 342

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  +++ E  L    +      IV    G  +      ++   A  L  + ++  D   
Sbjct: 343 KATNTHATEASLAAYDS------IVWIAGGLAKGATFDELVIGAAKRLRGVVLIGADR-- 394

Query: 422 SEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVA 465
                 IR  +    P   +   +R       EA+  A E+    D +++A
Sbjct: 395 ----ALIREALTRHAPEVPVVDLDRTDTGAMSEAVARAAELARPGDTVLLA 441


>gi|138894653|ref|YP_001125106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266166|gb|ABO66361.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 440

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 117/353 (33%), Gaps = 44/353 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + + ++ +  G      G    ++    +         +L   L
Sbjct: 101 APFIGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGLVA---CEVAKEAKPDQWLVTEL 157

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                 +D  +       N+   H+DYH T++AY  AK  +F
Sbjct: 158 SSFQLAG-----------------IDEFRPRIAVLLNIFDAHLDYHGTKEAYAAAKANIF 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                 +  A++ ADD    +++                  F   K +      Q  T+ 
Sbjct: 201 RNQTAHD-YAVVNADDPLVMDIVSSVRAQKVL---------FSVTKPLGEGAYVQDGTVY 250

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G+    +    LPG+  + N L A       G  +  +   L     V  R ++V   
Sbjct: 251 WNGESVIQIADIVLPGQHNLENILAAVAAAKLAGASNEAIRRVLTTFTGVKHRLQYV-AE 309

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G R Y D   T+  +    K +       +I+    G DR      ++  +    A +
Sbjct: 310 VDGRRFYNDSKATN--ILATQKALAAFADEPVIL-LAGGLDRGNEFDALLPYLQQVKAMV 366

Query: 413 AIVTDDNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   KI R     GI       N  +A+  A  +    DV+++
Sbjct: 367 LF-------GQTAAKIGRVAREAGIETVEYVDNVEKAVPVAFRLSEPGDVILL 412


>gi|89256192|ref|YP_513554.1| hypothetical protein FTL_0832 [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009773|ref|ZP_02274704.1| hypothetical protein Ftulh_03394 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367520|ref|ZP_04983546.1| hypothetical protein FTHG_00773 [Francisella tularensis subsp.
           holarctica 257]
 gi|89144023|emb|CAJ79271.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253336|gb|EBA52430.1| hypothetical protein FTHG_00773 [Francisella tularensis subsp.
           holarctica 257]
          Length = 561

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 133/378 (35%), Gaps = 29/378 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKV 282
             AK  +F  L  + S  II  D++Y KE   +   A   V     Q    +        
Sbjct: 283 AEAKSIVFRAL-GQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYA 341

Query: 283 CAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           C + +   V +    K       +         +  + NA++A  L   +GI   ++ + 
Sbjct: 342 CIVEDGNFVWVEANSKKVILPVIEAPLTVRSFAKHNIENAMIAIALSFKLGISFDVIEKA 401

Query: 336 LEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG 392
           L          R              +DYAH    +E +L  ++     G+  ++ G  G
Sbjct: 402 LRSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTG 461

Query: 393 DRDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKG 443
           DR      I   I     D  ++  T+   R     E P  IR ++      I       
Sbjct: 462 DRKYLISGINDIILKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISH 521

Query: 444 NRIEAIRTAIEMLNKQDV 461
             I+ ++  +E L   D+
Sbjct: 522 GEIDGVKFLVEKLESNDM 539


>gi|15615810|ref|NP_244114.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus halodurans C-125]
 gi|20139205|sp|Q9K7W1|MURC_BACHD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|10175871|dbj|BAB06967.1| UDP-N-acetylmuramate-alanine ligase [Bacillus halodurans C-125]
          Length = 433

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 115/351 (32%), Gaps = 49/351 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS+AYS +            L + +   FL  F  R         +AVTG+ GK+S  
Sbjct: 64  VVVSAAYSDEHEEVVAAKEQG-LEIQSYPTFLGEFIQRF------TSIAVTGSHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +SF IG   T    A  +     +  Y    L+Y              
Sbjct: 117 GLLSHVLGSHCPTSFLIG-DGTGKGAADSHYFVFEACEYRRHFLNY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YAD 249
                       +      TN+  DH DY       F+A    F+E+  +   AI+   D
Sbjct: 162 ------------RPDYCIMTNIDFDHPDYFDDINDVFSA----FQEMAMQVKKAIVACGD 205

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
           D   + +     +A   V+  G+ +      + +          + V    + DF  P  
Sbjct: 206 DEQLQGI-----HANVPVVYYGFNEDNDFQARNIEVTSEGTHFQVFVRNNHYGDFTIPRF 260

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V N+L    LC    I   ++   L+    V  RF        G  +  DYAH   
Sbjct: 261 GKHNVLNSLAVIALCHYENIPVEVLARELKTFEGVKRRFTEKTLG--GQILIDDYAHHPT 318

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +   ++  +       ++ +F                 AL  AD   + D
Sbjct: 319 EISATIEAAKQKYPDRPVVAIFQPHTFSRTKAFLHEFAEALKQADHVYLCD 369


>gi|115314665|ref|YP_763388.1| tetrahydrofolylpolyglutamate synthase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502248|ref|YP_001428313.1| UDP-N-acetylmuramyl tripeptide synthase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|254369190|ref|ZP_04985202.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290954333|ref|ZP_06558954.1| UDP-N-acetylmuramyl tripeptide synthase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312241|ref|ZP_06803039.1| UDP-N-acetylmuramyl tripeptide synthase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|115129564|gb|ABI82751.1| possible tetrahydrofolylpolyglutamate synthase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156252851|gb|ABU61357.1| UDP-N-acetylmuramyl tripeptide synthase with glutame ligase domain
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122140|gb|EDO66280.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 561

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 133/378 (35%), Gaps = 29/378 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKV 282
             AK  +F  L  + S  II  D++Y KE   +   A   V     Q    +        
Sbjct: 283 AEAKSIVFRAL-GQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYA 341

Query: 283 CAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           C + +   V +    K       +         +  + NA++A  L   +GI   ++ + 
Sbjct: 342 CIVEDGNFVWVEANSKKVILPVIEAPLTVRSFAKHNIENAMIAIALSFKLGISFDVIEKA 401

Query: 336 LEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG 392
           L          R              +DYAH    +E +L  ++     G+  ++ G  G
Sbjct: 402 LRSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTG 461

Query: 393 DRDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKG 443
           DR      I   I     D  ++  T+   R     E P  IR ++      I       
Sbjct: 462 DRKYLISGINDIILKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISH 521

Query: 444 NRIEAIRTAIEMLNKQDV 461
             I+ ++  +E L   D+
Sbjct: 522 GEIDGVKFLVEKLESNDM 539


>gi|311280929|ref|YP_003943160.1| UDP-N-acetylmuramate/alanine ligase [Enterobacter cloacae SCF1]
 gi|308750124|gb|ADO49876.1| UDP-N-acetylmuramate/alanine ligase [Enterobacter cloacae SCF1]
          Length = 491

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 136/412 (33%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
              +  A   +  P++     R+   + A  +  +H    +A+ GT GK++  + V  I 
Sbjct: 91  ENPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVASIY 141

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +GL    +      ++        +         ++       + +            
Sbjct: 142 AEAGLDPTFVNGGLVKAAGVHARLGNS------RYLIAEADESDASFL------------ 183

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E++
Sbjct: 184 ---HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELL 240

Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNA 315
            R      ++ + G+     + ++    I  +   T+  + K   + +   PG     NA
Sbjct: 241 PRVGR---QITTYGFSDDADVRVEDYSQIGAQGHFTLIRQDKAVLNVVLNAPGRHNALNA 297

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTSN 367
             A  +    GID   +L  L        RF+F+G          S    +  DY H   
Sbjct: 298 AAAVAVATEEGIDDESILRALASFQGTGRRFDFLGEFPLQEVNGKSGSAMLVDDYGHHPT 357

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            ++  +K  R       ++++F                  L   D  ++ D  P  E P 
Sbjct: 358 EVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYPAGEAP- 416

Query: 427 KIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
            I       +   I    +++ I         EML       D+++V G G+
Sbjct: 417 -IPGADSRSLCRTIRGRGKVDPILVSDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|332799092|ref|YP_004460591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
 gi|332696827|gb|AEE91284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
          Length = 468

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 111/292 (38%), Gaps = 30/292 (10%)

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +   ++ VE SS  L+   +   +       N+ +DH++ H+T + Y  AK R+ E  + 
Sbjct: 171 EDKDYLVVEVSSFQLEN--IMHFRPKISVILNITKDHLNRHKTFEKYIEAKARILENQI- 227

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    ++  DD   +   K+A     +VL    + +      V        + I   GK 
Sbjct: 228 EGDYTVLNYDDPIVRTFAKKAKP---KVLFFSRKEELERGAYV----KNGVIVIRDNGKI 280

Query: 300 FDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +  L      + G   + NAL AA +     I+   + E ++    V  R EFV  N  G
Sbjct: 281 YPVLKAEELGIKGSHNLENALAAACVAWITRINLNNMAETMKDFRGVEHRLEFV-ANIDG 339

Query: 356 GRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +   D  A   ++ +  ++ +        IV+   G D+       +      +  + +
Sbjct: 340 IKFINDSKATNPDAAQKAIEALEE-----PIVLIAGGYDKKSDYSDFIKTFKGKVKKLIL 394

Query: 415 VTDDNPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D   I  +  I HG     +  +  +A+++A       DV+++
Sbjct: 395 IG-------DTASIIEDTAIKHGFFDIEKANSLQDAVKSAYNAAAAGDVVLL 439


>gi|239987056|ref|ZP_04707720.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 11379]
          Length = 475

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 143/411 (34%), Gaps = 55/411 (13%)

Query: 71  IVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +VV++     D     A   +  P+    +      L      GK     LAVTGT+GK+
Sbjct: 73  LVVTAPGWQPDKPLFLAAAEAGVPVW--GDVELAWRL--RGDNGKKAAPWLAVTGTNGKT 128

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  I + +GL +  +G                     ++   + L       ++V
Sbjct: 129 TTVRMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGETEYDVLAV 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E         +  
Sbjct: 171 ELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTV---ACVYN 225

Query: 248 ADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D  ++++++ A    GCR +             V       +  ++   K    L  +
Sbjct: 226 VADPATEDLVREADVEEGCRAIGFTLGAPGPSQLGVVDGILVDRAFVANRQKQAQELAEV 285

Query: 307 -----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                P    + NAL AA L  A G++ A V + L        R E V        +   
Sbjct: 286 TDVDPPAPHNIANALAAAALARAFGVEPAAVRDGLRAFRPDAHRIEHVADIGEVAYVDDS 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  +++ E  L +  +       +V+  GG         +   A       ++      
Sbjct: 346 KATNTHATEASLASYDS-------IVWIAGGLAKGATFDELVIGAAKRLRGVVLM----- 393

Query: 422 SEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVA 465
             D   I   +    P   +   +R       EA+  A E+    D +++A
Sbjct: 394 GADRALIHEALTRHAPEVPVVDLDRTDTGAMSEAVARAAELARPGDTVLLA 444


>gi|261345182|ref|ZP_05972826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rustigianii DSM 4541]
 gi|282566874|gb|EFB72409.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rustigianii DSM 4541]
          Length = 447

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 115/371 (30%), Gaps = 41/371 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +      +     SP ++ +
Sbjct: 89  PERWVLAVAGTHGKTTTAGMLAWILEDCGYEPGFL--IGGVPGNFDVSSKIGNSPFFVIE 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D  +  +A       
Sbjct: 147 ADEYDCAFFDKRSKFVHYS------------PKTLILNNLEFDHADIFENLEAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P     ++   D   K+VM            VG  G++   + V   H+  +  
Sbjct: 195 LV-RLVPASGKILMPDSDNNLKQVMNM--GCWSEQELVGEHGEW---QAVKLNHDGSRFE 248

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + +   +  +   G   + N L+A      +G+ +      L+K      R E  G 
Sbjct: 249 VHYQQQKVGEVNWSQVGNHNIQNGLMAIAAAHHVGVPAKEACLALDKFINARRRLELRGV 308

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALD 408
                 +Y D+AH   ++   L+ +R+   G  RII V          G        AL 
Sbjct: 309 E-NDVSVYDDFAHHPTAILATLEALRSKVGGTARIIAVLEPRSNTMKMGINKNDIAPALG 367

Query: 409 LADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +         P  I     EI            +        IE     D ++V
Sbjct: 368 RADEVFLFQ-------PTNIPWMVTEIAEHCVQPAHWHADVDTLANMVIETAQPGDHILV 420

Query: 465 AGKG-----HE 470
              G     HE
Sbjct: 421 MSNGGFGGIHE 431


>gi|332976299|gb|EGK13157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Desmospora sp.
           8437]
          Length = 386

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 140/400 (35%), Gaps = 49/400 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSS 128
           +   + L   +  I    P+L    TR          A +L      +++ +TG++GK++
Sbjct: 1   IHEGWDLLVKNPGIPYRVPLLQEAETRGIPVVTEVEIAWQLTE---ASMIGITGSNGKTT 57

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S V ++  R G+ +   G    I     +         +L   LS    +G       
Sbjct: 58  TTSLVGRMLARGGIPARVAG---NIGMALSEVAPGMDQEEWLISELSSFQLKG------- 107

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                         +   G+  NL   H+DYH + + Y  +K +LF    P +  A++  
Sbjct: 108 ----------TRQFRPRIGALLNLVPAHLDYHGSMEDYLESKGKLFANQQPGD-IAVLNR 156

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----F 304
           D    + +  +       V     Q        V       ++    +G++   L     
Sbjct: 157 DSDVCRRLAPQLRG---DVWWFSRQEPVDRGLMVKQGWVTARL---PDGEELSLLPASQV 210

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG     NAL A+ + +A G  +  + E L     V  R EFV T   G R Y D   
Sbjct: 211 RLPGIHM-ENALAASAIALAAGCPADALREELRTFTGVEHRLEFVAT-VDGVRYYNDSKA 268

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T+   +     + + T    IV+   G DR    R ++           IVT     + D
Sbjct: 269 TNG--KAATSAMESFTEP--IVLIAGGLDRGVDFRELVP--VFQKRLKGIVT--YGEAGD 320

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               RAE    +P         +A+  A  +    DV+++
Sbjct: 321 VLLKRAE-EASVPLRERAEEIADAVTRASRLAAAGDVVLL 359


>gi|326562287|gb|EGE12613.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 103P14B1]
 gi|326574539|gb|EGE24480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis CO72]
 gi|326575490|gb|EGE25415.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 101P30B1]
          Length = 460

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 116/361 (32%), Gaps = 24/361 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++LAV GT GK++  + +  I Q SG+ +   IG    +++  +   L      YL K 
Sbjct: 103 RHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGKQ 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V       S+    + +    +       NL  DH D      A    +   
Sbjct: 163 F------FVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAI-QTQFHH 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++P +   II A+    +  + +       V+     G      K+ A ++     +
Sbjct: 216 MIRMIPSKGQIIIPANTPSLETTLDK--GVWTTVVRTSLNGDAEWQAKLDA-NDGSSFWV 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + + G   V NAL A      +G+   +    L     +  R E +G + 
Sbjct: 273 HHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG-DV 331

Query: 354 RGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
               ++ D+AH   ++   L    + +   RI  +          G        +  +AD
Sbjct: 332 DDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAAIAD 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             I         +P+ +   +   I         + I A I          D +++   G
Sbjct: 392 QVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIMSNG 444

Query: 469 H 469
            
Sbjct: 445 D 445


>gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823]
 gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823]
          Length = 762

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 122/396 (30%), Gaps = 74/396 (18%)

Query: 30  INEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I  +  DSR IQ   G +F A+ G+   G+ FI  A  QG    V+      ++ S+   
Sbjct: 26  ITHIYFDSRKIQQANGALFFALSGHSRSGNEFIENAYQQGIRFFVI-----AKNASSKFH 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +     V+     L   A+    ++   ++A+TG+ GK++   ++              
Sbjct: 81  PDALYFQVEEPLTALQQLATHHRKQYTYPVVAITGSVGKTTFKEWIFHC----------- 129

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG---VTHVSVEASSHGLDQHRLDGIKL 204
                IS   +  R        +  ALS L       +  +    S  G  +   D I+ 
Sbjct: 130 -----ISDKFKVVRSPKSFNSQIGVALSLLEMHENASIAFIEAGISKPGEMKILRDMIQP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FT  G+ H +     + +   K  LF E                          A 
Sbjct: 185 DFGIFTAFGKAHRENFADNEEHLLEKWTLFREC-----------------------KLAF 221

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                   + +     +VC  +      I   G        L                  
Sbjct: 222 IPHTFADLENRLPGNFQVCESYENHHFPIGYSGMLGVLKTFLAY---------------- 265

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +  +S  +LE +  L  +  R E     +    I   Y    ++L   L   R +   + 
Sbjct: 266 LQFESHQILERINSLPTLALRMEVFEGVNGNTIINDTYNLDFDALSEALIYQRQLAPTKK 325

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            +V     ++   +R  + K+         +T  NP
Sbjct: 326 RIVVIGLSEKHAHERLEIEKL---------ITSFNP 352


>gi|304387552|ref|ZP_07369741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria meningitidis
           ATCC 13091]
 gi|304338439|gb|EFM04560.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria meningitidis
           ATCC 13091]
          Length = 458

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 123/370 (33%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   I        ++ + +       V   G +    H  +V
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQV 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              +      + ++GK      + L G     NAL        +G+D     E L     
Sbjct: 261 GEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                ++L  AD            D     AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPVSLKDADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|325570066|ref|ZP_08145991.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156894|gb|EGC69065.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 444

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 98/308 (31%), Gaps = 40/308 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   +AVTG+ GK+S    +  +      +SF IG   T          +  +  Y   
Sbjct: 103 QPYTSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIG-DGTGHGEPDAEFFSFEACEYRRH 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+Y                                 TN+  DH DY  +    F+A   
Sbjct: 162 FLAY--------------------------SPDYAIMTNIDFDHPDYFHSIDDVFSAFQS 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
           +  ++   +     + DD Y +++      A   +   G      +  K +       + 
Sbjct: 196 MASQV---KKGIFAFGDDEYLRKL-----EADVPIYYYGVNDNDDVQAKNIERTTQGSEF 247

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + + G++   F+ P  G+  + NAL    +    G+D   V   +     V  RF    
Sbjct: 248 DVFIHGENIGHFVLPAFGQHNINNALSVIAVAYKEGLDMKEVAAEMLSFPGVKRRFSEKI 307

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  I  DYAH    ++  +    +      II VF                 ALDL
Sbjct: 308 VADM--TIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDL 365

Query: 410 ADIAIVTD 417
           AD   + D
Sbjct: 366 ADHVYLCD 373


>gi|15639332|ref|NP_218781.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025574|ref|YP_001933346.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema pallidum subsp.
           pallidum SS14]
 gi|6093444|sp|O83361|MURC_TREPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620436|sp|B2S2T8|MURC_TREPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3322616|gb|AAC65326.1| UDP-N-acetylmuramate--alanine ligase (murC) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018149|gb|ACD70767.1| UDP-N-acetylmuramate--alanine ligase [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059731|gb|ADD72466.1| UDP-N-acetylmuramate--alanine ligase [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 481

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 145/422 (34%), Gaps = 54/422 (12%)

Query: 70  AIVVSSAYSLQD---FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            ++ S+AY  ++    +   R   P L      + L   +   +         + G  GK
Sbjct: 76  VVIHSAAYVPEENDELAEAYRRGIPTLTYP---EALGDISCARF------SCGIAGVHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + + Q+ +        +   S +S       +      ++A+   Y       H  
Sbjct: 127 TTTTAMIAQMVKEL-RLDASVLVGSAVSGNNDSCVVLNGDTFFIAETCEYRRHFLHFHPQ 185

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  T++  DH DY+ + +    A     + L P+      
Sbjct: 186 KI-------------------VLTSVEHDHQDYYSSYEDILAAYFHYIDRL-PQFGELFY 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFP 305
             DD   +EV++ A  +   ++ V Y  +      V     + + ++ S+ G   +F   
Sbjct: 226 CVDDQGVREVVQLAFFSRPDLVYVPYGERAWGDYGVSIHGVQDRKISFSLRGFAGEFYVA 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVV------PGRFEFVGTNSRGGR 357
           LPGE  V NA  A  L +++       + +EHL  L  V        R   V    RG  
Sbjct: 286 LPGEHSVLNATGALALALSLVKKQYGEVTVEHLTALRKVLALFQGCRRRSEVLGEVRGIL 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DY H   +++  L+ ++T    R IVV F                 +   AD+ I+ 
Sbjct: 346 FMDDYGHHPTAIKKTLRGLKTFFPERRIVVDFMSHTYSRTAALLTEFAESFQDADVVILH 405

Query: 417 DDNPRSEDPEKIRAEII-HGIPGFIEKGNRI----EAIRTAI----EMLNKQDVLVVAGK 467
           +    + +  +   E+    +    ++ +R     EA+  A+      L + D+ V  G 
Sbjct: 406 EIYASAREVYQ--GEVNGEHLFELTKRKHRRVYYYEAVMQAVPFLQAELKEGDLFVTLGA 463

Query: 468 GH 469
           G 
Sbjct: 464 GD 465


>gi|163846336|ref|YP_001634380.1| UDP-N-acetylmuramate--alanine ligase [Chloroflexus aurantiacus
           J-10-fl]
 gi|189028982|sp|A9WG70|MURC_CHLAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163667625|gb|ABY33991.1| UDP-N-acetylmuramate--alanine ligase [Chloroflexus aurantiacus
           J-10-fl]
          Length = 474

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 131/437 (29%), Gaps = 56/437 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  QGA+ ++ ++A           +   I      R   +        + P 
Sbjct: 52  GHD---PAYVQGADVVLATAAIRGTHPELEAAAAAGI-----PRLSRADLWRLWSEQRP- 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+ GT GK++  +      + +G+    +   + + +     +   P    + +A  
Sbjct: 103 -VIAIAGTHGKTTTTALTALALRGAGIRCGFL-IGADVPALGGSAQWGDPEAPLVIEADE 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y                         +       TN+  DH D + T   Y  A    F 
Sbjct: 161 YDRVFLA-------------------LTPALAIITNVEWDHPDVYPTPSEYTAA-FAAFS 200

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--------LSVGYQGKFIHLKKVCAIHN 287
             +      ++ ADD  +  +  ++      +        +S            V     
Sbjct: 201 RQVRDPRRLLVCADDPGALALAGQSEARLYGIDEHIATDPVSCRLAPLDWTASGVTGTAT 260

Query: 288 KQQVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            QQ  +    +              +PGE  V NA  A       G D    +  L +  
Sbjct: 261 GQQFDLWYYDRRSFGRRLAATVTLAIPGEHNVRNATAALAAAALWGADLRTAVTALAEYR 320

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
               RFE+ G    G  +  DYAH    ++  L   R      R+IV             
Sbjct: 321 GSSRRFEWRGDVG-GITVIDDYAHHPTEVQATLLAARQRYPDRRLIVYLQPHTFSRTRSL 379

Query: 400 PIMGKIALDLADIAIVTDDNPRSE--DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTA 452
                 A   A + +V D  P  E  DP  +        I HGIP      +   A    
Sbjct: 380 WDQWPAAFREAAVVLVGDIYPAREQGDPVALAQSLVDHLIAHGIPARYAGPS-ALAPSAL 438

Query: 453 IEMLNKQDVLVVAGKGH 469
           + +    DV++  G G 
Sbjct: 439 LAVAQSGDVVLTLGAGD 455


>gi|208779766|ref|ZP_03247110.1| Mur ligase family, glutamate ligase domain protein [Francisella
           novicida FTG]
 gi|208744221|gb|EDZ90521.1| Mur ligase family, glutamate ligase domain protein [Francisella
           novicida FTG]
          Length = 561

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 133/378 (35%), Gaps = 29/378 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKV 282
             AK  +F  L  + S  II  D++Y KE   +   A   V     Q    +        
Sbjct: 283 AEAKSIVFRAL-GQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYA 341

Query: 283 CAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           C + +   V +    K       +         +  + NA++A  L   +GI   ++ + 
Sbjct: 342 CIVEDGNFVWVEANSKKVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKA 401

Query: 336 LEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG 392
           L          R              +DYAH    +E +L  ++     G+  ++ G  G
Sbjct: 402 LRSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTG 461

Query: 393 DRDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKG 443
           DR      I   +     D  ++  T+   R     E P  IR ++      I       
Sbjct: 462 DRKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISH 521

Query: 444 NRIEAIRTAIEMLNKQDV 461
             I+ ++  +E L   D+
Sbjct: 522 GEIDGVKFLVEKLESNDM 539


>gi|329667779|gb|AEB93727.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus johnsonii DPC
           6026]
          Length = 437

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 126/409 (30%), Gaps = 64/409 (15%)

Query: 83  SATIRSNTPILVV-------DNTRKFLSLFASRLYGKHPENI---------LAVTGTSGK 126
            A I+SN   ++V       DN      L  +  +  +P+ +         + V+GT GK
Sbjct: 59  PANIKSNAEQVIVKGNAFKQDNPEVAACLDKNVEWQSYPDTVEEIVQMHTSIGVSGTHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S +  +      +S+ IG                 S  ++ +A  Y       H  
Sbjct: 119 TSTTSLLAHVLGEVAPTSYLIGDGRGKG--------VEGSRFFVYEADEYRRHFLAYH-- 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH DY + Q  Y +A     ++    +    +
Sbjct: 169 -----------------PDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQ---TKKALFV 208

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           + DD   + +            + G++         +       +  +   GKD   F  
Sbjct: 209 WGDDKRLQSL-----KTNIPKYTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEI 263

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  + N      +     +    + E L        R  F   +     +  DYAH
Sbjct: 264 HLFGDHSILNTTAVIAVAYTEKVPMDDIKEGLLTFKGAKRR--FAEKDFGDVSVIDDYAH 321

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RS 422
               +   ++  R       ++VVF         K     +  L   D A VT       
Sbjct: 322 HPTEMRATIQAARQKFPDKELVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAR 381

Query: 423 EDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E    I   ++++ IPG      + I  +       +K  V+V  G G 
Sbjct: 382 EASGDISSEDLVNNIPGSEVIDLDNIADLTK-----HKNAVVVFMGAGD 425


>gi|326569002|gb|EGE19071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis BC1]
 gi|326569302|gb|EGE19363.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis BC7]
 gi|326571978|gb|EGE21983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis BC8]
          Length = 460

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 116/361 (32%), Gaps = 24/361 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++LAV GT GK++  + +  I Q SG+ +   IG    +++  +   L      YL K 
Sbjct: 103 RHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGKQ 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V       S+    + +    +       NL  DH D      A    +   
Sbjct: 163 F------FVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAI-QTQFHH 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++P +   II A+    +  + +       V+     G      K+ A ++     +
Sbjct: 216 MIRMIPSKGQIIIPANTPSLETTLDK--GVWTTVVRTSLNGDAEWQAKLDA-NDGSSFWV 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + + G   V NAL A      IG+   +    L     +  R E +G + 
Sbjct: 273 HHNNTSAMVRWSMSGLHNVNNALTAIAAAHHIGVSVEMACTALSHFGGIKRRMELIG-DV 331

Query: 354 RGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
               ++ D+AH   ++   L    + +   RI  +          G        +  +AD
Sbjct: 332 DDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAAIAD 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             I         +P+ +   +   I         + I A I          D +++   G
Sbjct: 392 QVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIMSNG 444

Query: 469 H 469
            
Sbjct: 445 D 445


>gi|311085956|gb|ADP66038.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 484

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 161/452 (35%), Gaps = 56/452 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           I + I  GA   +  S  ++++      S+ I SN   ++    R    L  + +     
Sbjct: 56  IKKLINLGATIYLQHSEKNIKNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILM 115

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
                +AV+GT GK++  S +  I   SGL    I  G   +I+S+A+    +       
Sbjct: 116 SFKKGIAVSGTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSSSYFITEAD 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L                        +       TN+  DHID++          
Sbjct: 176 ESDASFL-----------------------YLNPNIIIVTNIESDHIDHYDNSFKKLKQT 212

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
             +F + +     AI+  D+    +++    N  C++++ G+ +   + +      +   
Sbjct: 213 FLIFLKKITLYGTAIVCIDNNAICDIL---TNLKCKIITYGFNKNADVRIFLYKQNNFIG 269

Query: 290 QVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              I +   K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF
Sbjct: 270 HFYIILKNNKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEF 329

Query: 349 VG--------TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
           +G               +  DY H    L   +K IR +  +  +I++F           
Sbjct: 330 LGFLSIDQGFDKRANCMLIDDYGHHPTELSETIKTIRISWPNKNLIMIFQPHRYTRTYNL 389

Query: 400 PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTA 452
                  L   D+ ++      +E      D   +  +I      ++    N    + T 
Sbjct: 390 YHDFVQTLSQVDVLLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTL 449

Query: 453 IEMLNKQDVLVVAGKGHETVH---IVTNGEKK 481
           I+ L   D++++ G G+       I+    KK
Sbjct: 450 IQTLQGNDIILIQGAGNIDTIAHKILIKKTKK 481


>gi|150020782|ref|YP_001306136.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho melanesiensis
           BI429]
 gi|149793303|gb|ABR30751.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho melanesiensis
           BI429]
          Length = 431

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 119/312 (38%), Gaps = 26/312 (8%)

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +   S   + +  +Y     ++   ++ S  G + +  D +       TN+  DHI+
Sbjct: 128 NPTVFLGSTHPMLEYRNYRKGGNISVFEMDESQPGFENYNADFL-----IITNIRYDHIE 182

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
             ++ Q Y       FE+        I  +++           N     ++ G +     
Sbjct: 183 NFESLQHYNYC----FEKSCKNAKICISNSEN-----------NIEKNSITFGLKNADYK 227

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +  +  +  KQ+V I       +FL  +PG   V NAL    LC  +G + + VL+  E 
Sbjct: 228 ILSIEKMGYKQKVKILTPYGIKNFLLNVPGIHNVLNALSVIALCFELGYEKSAVLKAFED 287

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQG 397
             +   RF+     +    I  DY+HT   ++ +L   + +   + I ++F         
Sbjct: 288 FVLPGRRFQIY--RNEEITIIDDYSHTPIEIKSLLLTAKEVFKNKKIQIIFQPHRFTRLK 345

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           +       AL +AD   +T+     E   KI A+II          N IE I   IE+  
Sbjct: 346 REWKEFAKALSIADKVYITEVYGAFEKVGKISAKIIADEINATFLSN-IEDILD-IEI-E 402

Query: 458 KQDVLVVAGKGH 469
             +V + AG G 
Sbjct: 403 PDNVYIFAGAGD 414


>gi|103487367|ref|YP_616928.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
 gi|118595694|sp|Q1GRX7|MURD_SPHAL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|98977444|gb|ABF53595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
          Length = 434

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 103/296 (34%), Gaps = 51/296 (17%)

Query: 67  GAEAIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           G   +VVS    L +   A    +  + V+ +      LFA       P  ++ +TGT+G
Sbjct: 65  GFAGVVVSPGVPLNRHPIAAHARDAHVPVIGDIE----LFAEARSELPPHKVVGITGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + +  + + +G+     G                         L+          
Sbjct: 121 KSTVTALIAHMLESAGVPVLMGGNIGL-------------------PILTREPLPEAGVY 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  +D      +       TN+  DH+D +   + Y  +K RLF  L  ++  AI
Sbjct: 162 VLELSSFQIDLAH--SLACDVAVLTNISPDHLDRYDGFEGYVASKARLFS-LQHRDQVAI 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DD  SK +  R ++   RV +                                    
Sbjct: 219 IATDDDPSKMIASRVNHRLHRVSAKDIDPVDQARWPA----------------------- 255

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           L G     NA+ A   C  +G+D   +   L     +P R E VG  +RG R Y D
Sbjct: 256 LQGPHNAQNAVCAIAACRVLGLDDEAIERGLATFRSLPHRMELVG-EARGARWYND 310


>gi|262370166|ref|ZP_06063493.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
 gi|262315205|gb|EEY96245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
          Length = 448

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 138/404 (34%), Gaps = 56/404 (13%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           AE IV+S      L +  A I    P++  +   R+              + I+A+TG++
Sbjct: 66  AEEIVISPGLDPKLPEIQAAIAKGIPVVSEIQILRRA-----------TDKPIMAITGSN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
            KS+V + +  + + +G+     G                     L +    L+      
Sbjct: 115 AKSTVTTLIGLMAEHAGVKVAVGG--------------------NLGRPALDLTKDEPDL 154

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS  L+      ++       N+  DH+D H     Y  AK R+F+ +       
Sbjct: 155 YILELSSFQLE--TTSNLQAEVAVVLNMSEDHLDRHGDMMGYHTAKHRIFQGV----KKV 208

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           +   DD+ ++ ++  A        S G     ++   V    +          +      
Sbjct: 209 VHNRDDSLTRPLVPDATPMQ----SFGLNAPDMNQYGVLRDDDGTIWLARGRTRLLNSAE 264

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V NAL    L  AI +    +LE L+    +  R EFV  +  G R Y D  
Sbjct: 265 MYIQGTHNVANALACLALGEAINLPLESMLETLKSFKGLEHRCEFVK-DVEGVRYYNDSK 323

Query: 364 HTS--NSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            T+   +L  I      I   G  + +   G  + Q    +   ++  +    ++ +D  
Sbjct: 324 GTNVGATLAAIDGLGAAIEAKGGKVAIILGGQGKGQDFSALREALSKYVKVAVLIGED-- 381

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +  + + G    +      +A+          DV+++
Sbjct: 382 -----AALIEQAVAGTTTLLHAETLEQAVALCQAHTQAHDVVLL 420


>gi|120555365|ref|YP_959716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
 gi|158513048|sp|A1U3G0|MURD_MARAV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120325214|gb|ABM19529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
          Length = 446

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 125/344 (36%), Gaps = 39/344 (11%)

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V + V ++ + +G +    G   T +                      L  Q
Sbjct: 115 TGSNGKTTVTTLVGEMARAAGRNVQVGGNIGTPA--------------------LDLLEQ 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G     +E SS  L+    + +  +A +  N+  DH+D +  + AYF AK R++      
Sbjct: 155 GADLYVLELSSFQLE--TTEELGALAATVLNVSDDHMDRYPDKMAYFQAKQRIYRGC--- 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+  DDA S  + +       R L  G+                  +T  +E    
Sbjct: 210 -KNAIVNLDDALSTPMARD----TLRFLCFGFNRVNPETFSTRDDDEGTWITWGLENLLL 264

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   + N + A  L  A G+    +LE   +   +P R E V   +  G  Y+
Sbjct: 265 ASELQLMGRHNISNVMAALALGYAAGLAMEPMLEVARRFRGLPHRCESV--RNLDGVDYI 322

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           + +  +N    +      +     +++   G  +    +P+   +A     + ++     
Sbjct: 323 NDSKGTNVGATVAAIESLVPESGKVILIAGGDGKGADFQPLAEPVAACCRALVLI----- 377

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              D  KI   +   +P      +  EA+  A +     D +++
Sbjct: 378 -GRDAGKISRAVGASVPQH-RATSLQEAVSLARQAAEPGDRVLL 419


>gi|311086530|gb|ADP66611.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 161/452 (35%), Gaps = 56/452 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           I + I  GA   +  S  ++++      S+ I SN   ++    R    L  + +     
Sbjct: 25  IKKLINLGATIYLQHSEKNIKNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILM 84

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
                +A++GT GK++  S +  I   SGL    I  G   +I+S+A+    +       
Sbjct: 85  SFKKGIAISGTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSSSYFITEAD 144

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L                        +       TN+  DHID++          
Sbjct: 145 ESDASFL-----------------------YLNPNIIIVTNIESDHIDHYDNSFKKLKQT 181

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
             +F + +     AI+  D+    +++    N  C++++ G+ +   + +      +   
Sbjct: 182 FLIFLKKITLYGTAIVCIDNNAICDIL---TNLKCKIITYGFNKNADVRIFLYKQNNFIG 238

Query: 290 QVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              I +   K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF
Sbjct: 239 HFYIILKNNKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEF 298

Query: 349 VG--------TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
           +G               +  DY H    L   +K IR +  +  +I++F           
Sbjct: 299 LGFLSIDQGFDKRANCMLIDDYGHHPTELSETIKTIRISWPNKNLIMIFQPHRYTRTYNL 358

Query: 400 PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTA 452
                  L   D+ ++      +E      D   +  +I      ++    N    + T 
Sbjct: 359 YHDFVQTLSQVDVLLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTL 418

Query: 453 IEMLNKQDVLVVAGKGHETVH---IVTNGEKK 481
           I+ L   D++++ G G+       I+    KK
Sbjct: 419 IQTLQGNDIILIQGAGNIDTIAHKILIKKTKK 450


>gi|260687887|ref|YP_003219021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
 gi|260213904|emb|CBE05944.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
          Length = 451

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 110/335 (32%), Gaps = 37/335 (11%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V +I  R+   ++ +G    I +   D   T+     L   LS               
Sbjct: 125 SLVGEIFSRAKRDTYVVG---NIGNPVIDTIETSSEESVLVTELSSFQ------------ 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                   +D  +    +  N+  DH++ H T + Y  AK  +F     ++   ++  DD
Sbjct: 170 -----LESIDEFRPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVED-FCVLNYDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K +  + +               ++L+    I +       +   D      LPG  
Sbjct: 224 EVVKSLADKCNAKVIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVS----LPGGH 279

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-L 369
            + N + A  +     ID  +  + L     V  R EFV        +        +S +
Sbjct: 280 NLENCMAAIAIAYVCKIDLEVTKDVLMTFKGVEHRQEFVRNLDNVIYVNDSKGTNPDSTI 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + I    R       I++   G D+      ++      +  + ++ +     E+  K  
Sbjct: 340 KAIQSYDRP------IILIAGGMDKGSNFDELLETAKSYVKSLVLLGETASNIENCAK-- 391

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                G        +  EA++T+ E+    D++++
Sbjct: 392 ---NKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|212637106|ref|YP_002313631.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella piezotolerans WP3]
 gi|212558590|gb|ACJ31044.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella piezotolerans WP3]
          Length = 461

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 112/357 (31%), Gaps = 24/357 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK+S AS +  I +  G     +     +      +     SP ++ +A 
Sbjct: 107 RWVLAVSGTHGKTSTASMLAWILEDCGYEPGFL--IGGVPQNFGVSARLGGSPFFVVEAD 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+                       +       NL  DH D     +A    +    
Sbjct: 165 EYDSAFFDKRSKFVHY------------QPRTLVINNLEFDHADIFDDLKAIQR-QFNHV 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P E   I  AD    ++V++                            +  +  + 
Sbjct: 212 IRTVPGEGKVIWPADAKSVQQVIEL--GCWSEQEMYHLNSAATGWYATNLSEDGHEFEVF 269

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +EG     + + L G+  + NA++A      +G+     +E L K      R E +G  +
Sbjct: 270 LEGDSQGVVNWQLIGQHNIENAVMAIAAARHVGVKPDAAIEALVKFAPPKRRMELIGCVA 329

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLAD 411
            G  +Y D+AH   ++   L  +R       + V           G        +L LA 
Sbjct: 330 -GVEVYDDFAHHPTAITTSLAGMRAKVGAGKVTVILEPRSNTMKSGVHKDTLANSLALAS 388

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            A +            I A +           +  E I  A+      D ++V   G
Sbjct: 389 NAYL---YQAGNIDWDISAAMSTAAVPVEVLFDIDEIIAKAVAQACSGDTIIVMSNG 442


>gi|228998694|ref|ZP_04158281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
 gi|228761162|gb|EEM10121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
          Length = 450

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 144/397 (36%), Gaps = 46/397 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKS 127
           ++    SL   +  I  + P+LV    ++         A R+        + +TG++GK+
Sbjct: 68  LLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYRISE---APFVGITGSNGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   ++ +         G   T++    +          +   LS     G      
Sbjct: 125 TTTTLTFEMLKEGQKHPVIAGNIGTVA---CEVAQAAKENEVVVTELSSFQLMG------ 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I 
Sbjct: 176 -----------VETFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQT-EADYSVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD     +   +      + S     +     K  A++ K +  + V+         LP
Sbjct: 224 ADDVDVMALSANSKGQKV-LFSATKVIEDGACIKDGALYFKGEKIVEVQD------IVLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G+++  ++  L++   V  R E+V T +   + Y D   T+ 
Sbjct: 277 GKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN- 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +    K +   T    +++   G DR      ++          AI+T        P+ 
Sbjct: 335 -MLATEKALSAFTQP--VILLAGGLDRGNEFDDLIPYF---EHVKAILTYGQTA---PKL 385

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +R     GI       N  EA+  A       DV+++
Sbjct: 386 VRVAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|291336143|gb|ADD95723.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C161]
          Length = 833

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 144/446 (32%), Gaps = 122/446 (27%)

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT---------NLGRD 215
           P  +   + L+ +   G + V+VE S   L +  +D + +    FT         N G D
Sbjct: 357 PDALQNQQILAGMVDAGASAVAVEISDESLLKGHIDSVNVDIIVFTNSPRMTAANNGGED 416

Query: 216 HIDYH---------QTQQAYFNAKMRLFEELL---------------------------- 238
           + D              +   + + +L +E                              
Sbjct: 417 NDDEDQETSTSASSGDDEEKADTEEKLIKEGEGEKEEDAFETSYESNLTEEEVQSWRERS 476

Query: 239 ---------PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCA 284
                    PK    ++  DD ++ E++    N    V++            ++ ++V  
Sbjct: 477 LAFISSLDDPKHQRVVVNLDDDFASEIIS---NCKVPVVTYARRREHRDIADVYCERVDL 533

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              +  V +S    + + +  L G+  V N L +    +A  I    + + L + +   G
Sbjct: 534 SLFETAVLVSTPVGETEIVTALVGDANVSNVLASIASGLATEIPLENIAQGLGRANPAGG 593

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC------------GG 392
           R E V    +     VD A T   +   +++ R I   R ++V                 
Sbjct: 594 RMELVD-EGQKFCALVDSAKTPEDVMNAIQSARAIPQCRRVIVVVGADGTNNDINATIDN 652

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSED--------------------------PE 426
             ++  R  +G+     AD+  VT  +P++ED                          P+
Sbjct: 653 GTEKAMRRKLGETVDKYADVVFVTTQSPKNEDAYDLLEDVVDGFRSRVYDLPEVKERLPD 712

Query: 427 KIRAEI-------------------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            I A+I                   +  +       +R  A+R AI M  + D +++ GK
Sbjct: 713 GIIADIPFMKDMYLIHPNAQSEAVELQNLVRRYVIVDRFFAVRAAIAMAEENDCVLILGK 772

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G +    +  G+K    D    R+ L
Sbjct: 773 GDQDFFEIE-GQKYWFDDRMESRDAL 797



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNK-----EDGHLFIPQAIA-QGAEAIVVSSAYSL 79
            + +I+ + SD+R+   G +FV +  +       DGH  +  AIA +GA A+V       
Sbjct: 98  EDVEISGIVSDARYAIPGDLFVCVDNSSDDQDPHDGHDDVSDAIALRGAVAVVSER---- 153

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQIC 137
           +D  A   +  P+ VV +T+  L       Y      ++        GK +  + ++ I 
Sbjct: 154 EDGVAENANGAPVAVVKSTKGILGKIGKAFYEDPSGKLVIAGVLGHRGKDTTCNLIKSIF 213

Query: 138 QRSGLSSFQIG 148
           + S  +  + G
Sbjct: 214 EASERTLKKNG 224


>gi|218780054|ref|YP_002431372.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
 gi|218761438|gb|ACL03904.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
          Length = 473

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 132/369 (35%), Gaps = 35/369 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT GK++ ++ +  +    G   +F IG   T  +F  ++++ T          +Y
Sbjct: 118 IMVTGTHGKTTTSALIAWLIAAVGLDPTFMIGGILT--NFKSNHQVGTG---------AY 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +G  + +          H            T++  DH D  +      +A   L + 
Sbjct: 167 MVIEGDEYDTAFFDKGPKFLHYT----PSRTVLTSVEFDHADIFKDLDHVKSAFTSLVKN 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L P+ES  +    D   K+++++A +        G +  +  + ++        + +   
Sbjct: 223 L-PRESLLVFQEADDNIKDILQQA-DCWLTPYGFGEKAPW-RIGEMRTEPPYTFIEVFRR 279

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+ F +F  PL G+    N L A  +   + I    +   LE    V  R +  G  +  
Sbjct: 280 GEFFAEFKVPLMGKHNALNCLAAIAVVDDLRIPVEGIQAGLETFKGVARRQQVRGVKNN- 338

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIA 413
             +  D+AH   ++   +K ++     GR+  VF        +     +     D ADI 
Sbjct: 339 ITVMDDFAHHPTAVRETIKAVKPFYDKGRVAAVFEPRTNSSRRKVFQDVYPTVFDDADII 398

Query: 414 IVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +       + P       EK+  ++           +    I    + L   D+ ++  
Sbjct: 399 CIPQPTLLEKIPPEERFSSEKLVEDLKARGKDAHFFADVQGIIDFLAKTLEPGDLALIMS 458

Query: 467 KG-----HE 470
            G     HE
Sbjct: 459 NGGFENIHE 467


>gi|312885129|ref|ZP_07744813.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367202|gb|EFP94770.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 489

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 146/417 (35%), Gaps = 48/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V+S+A    +          I +V    + L+      +G      +A+ GT GK+
Sbjct: 82  ASVVVISTAIDDHNPEIIAARQARIPIVRRA-EMLAELMRFRHG------IAIAGTHGKT 134

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V QI   +GL    +      S+          +   L  +   ++    +  S 
Sbjct: 135 TTTALVTQIYSEAGLDPTFVNGGLVKSA---------GASARLGSSRILIAEADESDASF 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ +    TN+  DH+D +             F   LP    AI+ 
Sbjct: 186 LH------------LQPMVSIVTNIEADHMDTYAGDFEKLKQTFIDFLHNLPFYGQAIVC 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
            DD   ++++ +      +V++ G+ +   + ++      ++ Q T+  EGK   D    
Sbjct: 234 IDDPIVRDLIPKISR---QVITYGFSEHADVRIENYHQTGHQGQFTVVREGKPLLDITLN 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVDY 362
           +PG     NA  A  +     I    +L  +        RFE +G   T+     +  DY
Sbjct: 291 IPGRHNALNAAAAIAVATEDDIKDEAILSAMASTQGTGRRFEHLGEFDTDKGQVMLVDDY 350

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            H    +++ ++  R      R+++++                  L+  D+ I+ D    
Sbjct: 351 GHHPTEVDVTIQAARNGWPQSRLVMIYQPHRFSRTRDLYDDFVNVLERVDVLIMLDVYAA 410

Query: 422 SEDP------EKIRAEII---HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P        +   I       P F+ + + + A+     +L   D+++  G G 
Sbjct: 411 GEAPISGADGRALCRTIRGRGKIDPIFVRETSELPAVLA--NVLQDGDLVLTQGAGD 465


>gi|15834763|ref|NP_296522.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
 gi|7190180|gb|AAF39021.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
          Length = 833

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 123/366 (33%), Gaps = 61/366 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + VTG+ GK++V+S +  I Q +G +  F IG  +                         
Sbjct: 137 IFVTGSHGKTTVSSLITVILQEAGKTPSFAIGGLNGEGINGSS----------------- 179

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  +   EA         +          TN+  +H+      +    A ++ F  
Sbjct: 180 ----GSEYFVAEADESDGS---IRNYSPEFSVITNIDDEHLSNFGGDRERLLASLQDFS- 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
                       D +  +        +     + G+     +H+        +   T+  
Sbjct: 232 -TKTRQICWYNGDCSRLR--------SCLVGHTFGFTSSCDLHILTYRQEGWRSFFTVRY 282

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   + D    L GE  V NA  A G+ +++GID   + + L++   V  R +    +S 
Sbjct: 283 QNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTIRDALQRFPGVQRRLQRKN-SSE 341

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADI 412
                 DYAH  + +   L+ +R+   G   V+  C   R    +  MG    A   AD 
Sbjct: 342 VFLFLEDYAHHPSEIACTLQAVRSAV-GSRRVLAICQPHRFSRLKECMGCFPSAFKGADE 400

Query: 413 AIVTDDNPRSEDPEKI-RAEIIHGIP----------------GFIEKGNRIEAIRTAIEM 455
            ++TD     E  E +   E+   I                 GF+EK  R+  +  A+  
Sbjct: 401 VLLTDVYSAGEAEEDVSYKELAQSISRESLVTCAYVPFSELQGFLEKHIRVHDVCVAL-- 458

Query: 456 LNKQDV 461
               D+
Sbjct: 459 -GAGDI 463


>gi|270284930|ref|ZP_06194324.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Nigg]
 gi|270288956|ref|ZP_06195258.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Weiss]
 gi|14194947|sp|Q9PLG1|MUDD_CHLMU RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
          Length = 802

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 123/366 (33%), Gaps = 61/366 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + VTG+ GK++V+S +  I Q +G +  F IG  +                         
Sbjct: 106 IFVTGSHGKTTVSSLITVILQEAGKTPSFAIGGLNGEGINGSS----------------- 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  +   EA         +          TN+  +H+      +    A ++ F  
Sbjct: 149 ----GSEYFVAEADESDGS---IRNYSPEFSVITNIDDEHLSNFGGDRERLLASLQDFS- 200

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
                       D +  +        +     + G+     +H+        +   T+  
Sbjct: 201 -TKTRQICWYNGDCSRLR--------SCLVGHTFGFTSSCDLHILTYRQEGWRSFFTVRY 251

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   + D    L GE  V NA  A G+ +++GID   + + L++   V  R +    +S 
Sbjct: 252 QNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTIRDALQRFPGVQRRLQRKN-SSE 310

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADI 412
                 DYAH  + +   L+ +R+   G   V+  C   R    +  MG    A   AD 
Sbjct: 311 VFLFLEDYAHHPSEIACTLQAVRSAV-GSRRVLAICQPHRFSRLKECMGCFPSAFKGADE 369

Query: 413 AIVTDDNPRSEDPEKI-RAEIIHGIP----------------GFIEKGNRIEAIRTAIEM 455
            ++TD     E  E +   E+   I                 GF+EK  R+  +  A+  
Sbjct: 370 VLLTDVYSAGEAEEDVSYKELAQSISRESLVTCAYVPFSELQGFLEKHIRVHDVCVAL-- 427

Query: 456 LNKQDV 461
               D+
Sbjct: 428 -GAGDI 432


>gi|304410633|ref|ZP_07392251.1| UDP-N-acetylmuramate [Shewanella baltica OS183]
 gi|307304730|ref|ZP_07584480.1| UDP-N-acetylmuramate [Shewanella baltica BA175]
 gi|304351117|gb|EFM15517.1| UDP-N-acetylmuramate [Shewanella baltica OS183]
 gi|306912132|gb|EFN42556.1| UDP-N-acetylmuramate [Shewanella baltica BA175]
          Length = 463

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 111/361 (30%), Gaps = 28/361 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I    G     +     I    Q+  ++         
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFL-----IGGVPQNFGVS--------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D      A     
Sbjct: 150 --ARLGKTAFFVVEADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQF 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P E   +  AD    K+ +     +      +       + K +    +  +
Sbjct: 208 NHLV-RTVPGEGKIVWPADSHAVKQTIDMGCWSEQETYHLAESTSGWYGKALSDDCH--R 264

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    L + L G+  + NA++A      +G+  +  +E L K      R E +
Sbjct: 265 FEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELL 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G    G  +Y D+AH   ++   LK +R       I V                 +A  +
Sbjct: 325 GI-VNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSM 383

Query: 410 --ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             AD A +            ++  +   +          + +          D +VV   
Sbjct: 384 MQADEAFL---YQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVMSN 440

Query: 468 G 468
           G
Sbjct: 441 G 441


>gi|56708206|ref|YP_170102.1| hypothetical protein FTT_1129c [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670677|ref|YP_667234.1| hypothetical protein FTF1129c [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118497701|ref|YP_898751.1| Mur ligase family protein [Francisella tularensis subsp. novicida
           U112]
 gi|134302120|ref|YP_001122089.1| glutamate ligase domain-containing protein [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|194323673|ref|ZP_03057449.1| Mur ligase family, glutamate ligase domain protein [Francisella
           tularensis subsp. novicida FTE]
 gi|224457310|ref|ZP_03665783.1| glutamate ligase domain-containing protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370693|ref|ZP_04986698.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875019|ref|ZP_05247729.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604698|emb|CAG45762.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321010|emb|CAL09145.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423607|gb|ABK89997.1| Mur ligase family protein [Francisella novicida U112]
 gi|134049897|gb|ABO46968.1| glutamate ligase domain protein, Mur ligase family [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151568936|gb|EDN34590.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|194322037|gb|EDX19519.1| Mur ligase family, glutamate ligase domain protein [Francisella
           tularensis subsp. novicida FTE]
 gi|254841018|gb|EET19454.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159424|gb|ADA78815.1| glutamate ligase domain protein, Mur ligase family [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 561

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 133/378 (35%), Gaps = 29/378 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKV 282
             AK  +F  L  + S  II  D++Y KE   +   A   V     Q    +        
Sbjct: 283 AEAKSIVFRAL-GQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYA 341

Query: 283 CAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           C + +   V +    K       +         +  + NA++A  L   +GI   ++ + 
Sbjct: 342 CIVEDGNFVWVEANSKKVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKA 401

Query: 336 LEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG 392
           L          R              +DYAH    +E +L  ++     G+  ++ G  G
Sbjct: 402 LRSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTG 461

Query: 393 DRDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKG 443
           DR      I   +     D  ++  T+   R     E P  IR ++      I       
Sbjct: 462 DRKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISH 521

Query: 444 NRIEAIRTAIEMLNKQDV 461
             I+ ++  +E L   D+
Sbjct: 522 GEIDGVKFLVEKLESNDM 539


>gi|239940572|ref|ZP_04692509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 15998]
 gi|291444007|ref|ZP_06583397.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346954|gb|EFE73858.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
          Length = 472

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 143/411 (34%), Gaps = 55/411 (13%)

Query: 71  IVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +VV++     D     A   +  P+    +      L      GK     LAVTGT+GK+
Sbjct: 70  LVVTAPGWQPDKPLFLAAAEAGVPVW--GDVELAWRL--RGDNGKKAAPWLAVTGTNGKT 125

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  I + +GL +  +G                     ++   + L       ++V
Sbjct: 126 TTVRMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGETEYDVLAV 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E         +  
Sbjct: 168 ELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTV---ACVYN 222

Query: 248 ADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D  ++++++ A    GCR +             V       +  ++   K    L  +
Sbjct: 223 VADPATEDLVREADVEEGCRAIGFTLGAPGPSQLGVVDGILVDRAFVANRQKQAQELAEV 282

Query: 307 -----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                P    + NAL AA L  A G++ A V + L        R E V        +   
Sbjct: 283 TDVDPPAPHNIANALAAAALARAFGVEPAAVRDGLRAFRPDAHRIEHVADIGEVAYVDDS 342

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  +++ E  L +  +       +V+  GG         +   A       ++      
Sbjct: 343 KATNTHATEASLASYDS-------IVWIAGGLAKGATFDELVIGAAKRLRGVVLM----- 390

Query: 422 SEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVA 465
             D   I   +    P   +   +R       EA+  A E+    D +++A
Sbjct: 391 GADRALIHEALTRHAPEVPVVDLDRTDTGAMSEAVARAAELARPGDTVLLA 441


>gi|257125003|ref|YP_003163117.1| UDP-N-acetylmuramate/alanine ligase [Leptotrichia buccalis
           C-1013-b]
 gi|257048942|gb|ACV38126.1| UDP-N-acetylmuramate/alanine ligase [Leptotrichia buccalis
           C-1013-b]
          Length = 449

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 122/375 (32%), Gaps = 50/375 (13%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP---ILVVDNTRK-----FLSLFASRLY 110
           +I Q         V      L  +S  I+   P    +V +N +K      L+   +R  
Sbjct: 54  YIGQVEEN-----VKDKGIDLFVYSTAIKETNPEYKYIVDNNIKKIKRGELLAEIMNRFD 108

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G      +AV GT GK++ +S +              G    I S +Q            
Sbjct: 109 G------IAVAGTHGKTTTSSMMSVALLEKEPFIVVGGIIPEIQSNSQIGNSEYFIAEAD 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L                        IK      TN+  DH+D+H T +    + 
Sbjct: 163 ESDNSFL-----------------------YIKPKYSVVTNIEADHLDHHGTFENIKKSF 199

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            +  +     E  A++  D    ++V     N      S+  +   I+ K +   +    
Sbjct: 200 EQFIDS---TERIAVLCKD--TVEKVGLDIKNKNVVWYSLKDETADIYAKNIRVENGITS 254

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   G++   F   +PG   V N+L           +   V E + K      R++ +
Sbjct: 255 YEVVKNGEELGTFSLSVPGNHNVSNSLPVIYFAHEFNCNMKKVKERILKFKGANRRYQVI 314

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             N+   RI  DYAH    +++ +        G++ V+F                 +L  
Sbjct: 315 YDNNL--RIIDDYAHHPTEVKVTINAAHNTEKGKVTVIFQPHRYSRTKFFFDDFVKSLKE 372

Query: 410 ADIAIVTDDNPRSED 424
           AD  I+      SED
Sbjct: 373 ADDLILLPIYAASED 387


>gi|113971482|ref|YP_735275.1| UDP-N-acetylmuramate [Shewanella sp. MR-4]
 gi|113886166|gb|ABI40218.1| UDP-N-acetylmuramate [Shewanella sp. MR-4]
          Length = 465

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 115/363 (31%), Gaps = 32/363 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +     I    Q+  ++         
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFL-----IGGVPQNFGVS--------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D      A     
Sbjct: 150 --ARLGESAFFVVEADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQF 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P +   I  AD    K+ ++    +      +    K  H K +    +  +
Sbjct: 208 HHLI-RTVPGQGKVIWPADSHAVKQTIEMGCWSEQETFHIAEVTKGWHAKALSDDCH--E 264

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    L + L G+  + NAL+A      +G+  +  +  L +      R E +
Sbjct: 265 FEVFFDGESQGVLEWALIGQHNIENALMAIAAARHVGVKPSAAIAALTRFVPPKRRLELL 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT   G  +Y D+AH   ++   +K IR       I +                 +A   
Sbjct: 325 GT-VHGVSVYDDFAHHPTAIATTIKGIRAKVGQSKITIVLEPRSNTMKSGVHKDTLA--- 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI----EMLNKQDVLVVA 465
              +++  D       + I   +   +   +     +  I   +          D +VV 
Sbjct: 381 --HSMLQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVSASAKAGDTIVVM 438

Query: 466 GKG 468
             G
Sbjct: 439 SNG 441


>gi|332304541|ref|YP_004432392.1| UDP-N-acetylmuramate [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171870|gb|AEE21124.1| UDP-N-acetylmuramate [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 436

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 118/361 (32%), Gaps = 37/361 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK+S +S +  I + +G+S   +     I    Q+  ++           
Sbjct: 91  RWVLAVSGTHGKTSTSSMLAWILESAGMSPGFL-----IGGIPQNFGIS----------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +  +       NL  DH D   +          
Sbjct: 135 ARLGETPFFVIEADEYDSAFFDKRSKFVHYRPRTLVINNLEFDHADIFDSIADIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P     I    D +  +V+ +   +  + +   ++                +  
Sbjct: 195 LI-RMIPGNGLVIAPKADTHITQVLDKGCWSPVQFVGSDWKVAECAAD-------GSEFD 246

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G  F    + L G+  V NA++A       G+   + +E L        R E +GT
Sbjct: 247 VVYKGTSFGRVKWSLLGQHNVQNAMMAIIAARHAGVLPEVAIEALTNFVNAKRRMEVLGT 306

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++   L+ +R       I+                  +A     
Sbjct: 307 -VNGITVYDDFAHHPTAISTTLEGLRAKVGKARILAVLEPRSNTMKMGVHKQTLAQSWSA 365

Query: 410 ADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD   +        S D    ++E+   +   +E        ++ +      D +++   
Sbjct: 366 ADQVFIYQPSHLSWSMDALLAQSEVTTSLHDDLEILE-----KSILSYAKPGDHILIMSN 420

Query: 468 G 468
           G
Sbjct: 421 G 421


>gi|148381457|ref|YP_001255998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933316|ref|YP_001385832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936485|ref|YP_001389239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. Hall]
 gi|166224758|sp|A7FZA3|MURD_CLOB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224759|sp|A5I7P2|MURD_CLOBH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148290941|emb|CAL85077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929360|gb|ABS34860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932399|gb|ABS37898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A str. Hall]
          Length = 458

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 123/362 (33%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T                
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  +  +   A         +G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNN-LLVLNKDDDLTNGMENEA---------LGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++++GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTIQGKEVCDSKDIKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+     G + Y D   +S S     + +  + S    V+   GG   +     + +  
Sbjct: 319 EFI-REVNGIKYYNDSIASSPS-----RTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQD 460
            D   I I+  D        KI++     I         +   +  EA++ A  M  K D
Sbjct: 373 YDKIKILILMGD-----TKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|270159321|ref|ZP_06187977.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|289165857|ref|YP_003455995.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
 gi|269987660|gb|EEZ93915.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|288859030|emb|CBJ12959.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
          Length = 879

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 29/365 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++V   +    + +      +G T+T   +  +  + +        A  
Sbjct: 483 PIVAVTGTNGKTTVVRLIAHFARYANH---HVGFTTTDGVYLNNKLIHSGDCSGPGSAQV 539

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRL 233
            L    V    +E +  G+ +  L   +      TN+  DH+  +   T +     K  +
Sbjct: 540 VLYDPEVDFAVLECARGGILRSGLGFDECDISIITNITGDHLGLNDIHTLEELAQVKA-V 598

Query: 234 FEELLPKESPAIIYADDAYSKE----------VMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                 K   AI+ ADD  + E          +     +   R             +   
Sbjct: 599 VAHSTKKSGYAILNADDNLTYELRNDFDCNIALFSMYESPRIRKHCRSGGLAAYIDQGKL 658

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +      T     K     F       + N L A    +        + E L   +   
Sbjct: 659 VVQRGADRTFLSNIKSIPLSFHGAATSMIANILAATLAGVISQFSFDKIKEALHVFYPTF 718

Query: 344 GRF--EFVGTNSRGGRIYVDYAHTSNS---LEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
                          ++ VDYAH   +   L+  L+++    + +I ++   G  RD+  
Sbjct: 719 ENLPGRMNLFKFPHCQVMVDYAHNEGAFCELKNYLESV--HCAKKIGIIGAVGDRRDEDI 776

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTA 452
             +  + A    +I I  D + R     +I   ++ GI      P      +   A+   
Sbjct: 777 EKLGFQAASMFDEIVIRHDKDGRGRTHNEINRLLVSGILRSEFKPSLNIISDEQAALEHV 836

Query: 453 IEMLN 457
           +E+ +
Sbjct: 837 LEVAD 841


>gi|78213668|ref|YP_382447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9605]
 gi|118595700|sp|Q3AHP0|MURD_SYNSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78198127|gb|ABB35892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9605]
          Length = 461

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 120/347 (34%), Gaps = 37/347 (10%)

Query: 70  AIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           A+V+         +   +RS    +             +          + +TGT+GK++
Sbjct: 72  AVVIGPGIPWDHPTLVQLRSEGVQVR--------GEMDTAWDALQQIPWIGITGTNGKTT 123

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  + + +GL++   G                 S   LA  +   +      + +E
Sbjct: 124 VTHLLSHVLEAAGLTAPMGGNIGL-------------SAAELACQIGSGAKPRPDWLVME 170

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS+ ++      +    G +T L  DH++ H + +AY   K      LL +   A+  A
Sbjct: 171 LSSYQIEAA--PAVAPKIGIWTTLTPDHLERHGSLEAYRAIK----RGLLERSECALFNA 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   ++  + + N G  V S G             I ++  V  +        +  +PG
Sbjct: 225 DDPDLRQ-QRSSWNRGTWVSSEGAHPDNQPAD--LWIDDEGMVRNNTTRLFAADVLAMPG 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N L+     +  G+    + + L     VP R E +GT +         A   ++
Sbjct: 282 RHNRQNLLLVTAAALEAGLSPQQIADALRTFPGVPHRLEQLGTLAGASVFNDSKATNYDA 341

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            E+ L+ ++        VV   GG   QG      K     A   I+
Sbjct: 342 AEVGLRAVQG------PVVVLAGGQTKQGDASGWLKQLQSKACSLIL 382


>gi|183602422|ref|ZP_02963788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683263|ref|YP_002469646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191224|ref|YP_002968618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196630|ref|YP_002970185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218341|gb|EDT88986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620913|gb|ACL29070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249616|gb|ACS46556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251184|gb|ACS48123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289177340|gb|ADC84586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794217|gb|ADG33752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 481

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 142/445 (31%), Gaps = 71/445 (15%)

Query: 65  AQGAEAIVVSSAYSLQDF----------------SATIRSNTPILVVDNTRKFLS----L 104
             GA  I V       D                 S      TP +V   +R         
Sbjct: 31  DAGATVIGVDEKLEAADLHSFDDIDWDEVDLVCTSPVFNPRTPFIVEAQSRGIEVISEVE 90

Query: 105 FASRLY-----GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
            A R+         P   + +TGT+GK+S      ++ +  G ++  +G      S    
Sbjct: 91  LAWRMRVPSERTGSPAPWIGITGTNGKTSTTEMTSEMLKACGYTAPAVGNIGNALS---- 146

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                          +         + VE SS  L  H    ++L   + TN+  DH+D+
Sbjct: 147 ---------------AAALDPVNDVLCVELSSFQL--HFTYSLELDCAAITNIAADHLDW 189

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQG---- 274
           H     Y   K ++F+     +      A DA   E+ + A  A  C  +          
Sbjct: 190 HGGMANYATDKSKVFDG---AKRVIAYNAQDARVSELARTAQTAEGCEHIGFTLGEPVSG 246

Query: 275 ----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL-----PGEFQVYNALVAAGLCIAI 325
               K   +  +  +   Q           DF              + +AL A  L + +
Sbjct: 247 QIGIKDGWIVDMSGLCGGQTGEAYALAPIADFTHLAEPDGTIYPHLLADALTALILVVGL 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGT--NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           G D A  L  L++      R + V    +  G   +VD +  +N+      ++ +   G 
Sbjct: 307 GADVATALNALKRFAPGGHRIQTVAELASPEGTIRFVDDSKATNA-HAARASLNSFAPGS 365

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
             VV+  GG         + +   +   A + I  D  P  E  +    E+   +    +
Sbjct: 366 --VVWIAGGLSKGATFEELVEQERNRLKAVVVIGIDQKPMLEALKAKAPELPLTVIDPAD 423

Query: 442 KGNRIE-AIRTAIEMLNKQDVLVVA 465
               +E AI  A +     DV+++A
Sbjct: 424 NATVMERAIDAAADFAEPGDVVLLA 448


>gi|182439212|ref|YP_001826931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467728|dbj|BAG22248.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 476

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 144/411 (35%), Gaps = 55/411 (13%)

Query: 71  IVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +VV++     D     A   +  P+    +      L      G+ P   LAVTGT+GK+
Sbjct: 74  LVVTAPGWQPDKPLFLAAAEAGIPVW--GDVELAWRL--RGDDGRKPAPWLAVTGTNGKT 129

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  I + +GL +  +G                     ++   + +       ++V
Sbjct: 130 TTVRMLASILRAAGLRTEAVGNIG------------------VSLLDAVVGETEYDVLAV 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L  H    ++  + +  NL  DH+D+H + +AY   K R++E         +  
Sbjct: 172 ELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTV---ACVYN 226

Query: 248 ADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D  ++++++ A     CR +             V       +  ++   K    L  +
Sbjct: 227 VADPATEDLVREADVVEGCRAIGFTLGAPGPSQLGVVDGILVDRAFVADRHKQAQELAEV 286

Query: 307 -----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                P    + NAL AA L  A G+  A V + L        R E V        +   
Sbjct: 287 SDVDPPAPHNIANALAAAALARAFGVQPAAVRDGLRAFRPDAHRIEHVADLDEVRYVDDS 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  +++ E  L    +      IV    G  +      ++   A  L  + ++  D   
Sbjct: 347 KATNTHATEASLAAYDS------IVWIAGGLAKGATFDELVIGAAKRLRGVVLIGADR-- 398

Query: 422 SEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVA 465
                 IR  +    P   +   +R       EA+  A E+    D +++A
Sbjct: 399 ----ALIREALTRHAPEVPVVDLDRTDTGAMSEAVARAAELARPGDTVLLA 445


>gi|254976246|ref|ZP_05272718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-66c26]
 gi|255093633|ref|ZP_05323111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CIP 107932]
 gi|255315381|ref|ZP_05356964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-76w55]
 gi|255518046|ref|ZP_05385722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-97b34]
 gi|255651162|ref|ZP_05398064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-37x79]
 gi|260684228|ref|YP_003215513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
 gi|306521010|ref|ZP_07407357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-32g58]
 gi|260210391|emb|CBA64782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
          Length = 451

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 111/335 (33%), Gaps = 37/335 (11%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V +I  R+   ++ +G    I +   D   T+     L   LS               
Sbjct: 125 SLVGEIFSRAKRDTYVVG---NIGNPVIDTIETSSEESVLVTELSSFQ------------ 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                   +D  +    +  N+  DH++ H T + Y  AK  +F     ++   ++  DD
Sbjct: 170 -----LESIDEFRPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVED-FCVLNYDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K +  + +               ++L+    I +       +   D      LPG  
Sbjct: 224 EVVKSLADKCNAKVIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVS----LPGGH 279

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-L 369
            + N + A  +     ID  ++ + L     V  R EFV        +        +S +
Sbjct: 280 NLENCMAAIAIAYVCKIDLEVIKDVLMTFKGVEHRQEFVRNLDNVIYVNDSKGTNPDSTI 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + I    R       I++   G D+      ++      +  + ++ +     E+  K  
Sbjct: 340 KAIQSYDRP------IILIAGGMDKGSNFDELLETAKSYVKSLVLLGETASNIENCAK-- 391

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                G        +  EA++T+ E+    D++++
Sbjct: 392 ---NKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|332678415|gb|AEE87544.1| Cyanophycin synthase II [Francisella cf. novicida Fx1]
          Length = 561

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 133/378 (35%), Gaps = 29/378 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDELIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKV 282
             AK  +F  L  + S  II  D++Y KE   +   A   V     Q    +        
Sbjct: 283 AEAKSIVFRAL-GQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYA 341

Query: 283 CAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           C + +   V +    K       +         +  + NA++A  L   +GI   ++ + 
Sbjct: 342 CIVEDGNFVWVEANSKKVILPVVEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKA 401

Query: 336 LEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG 392
           L          R              +DYAH    +E +L  ++     G+  ++ G  G
Sbjct: 402 LRSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTG 461

Query: 393 DRDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKG 443
           DR      I   +     D  ++  T+   R     E P  IR ++      I       
Sbjct: 462 DRKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISH 521

Query: 444 NRIEAIRTAIEMLNKQDV 461
             I+ ++  +E L   D+
Sbjct: 522 GEIDGVKFLVEKLESNDM 539


>gi|309783083|ref|ZP_07677802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918191|gb|EFP63869.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia sp. 5_7_47FAA]
          Length = 461

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 141/421 (33%), Gaps = 44/421 (10%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F P+ ++ GA+  V+ +  S  +    A +  N P +               +  +  + 
Sbjct: 53  FDPEQLSIGADLYVIGNVISRGNPLMEAILDRNLPYI------SGPQWLGDNVLRQ--KW 104

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++  S +  + Q +G +   +     +    ++  L+           + 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWVLQDAGYNPGFL-----VGGVPRNFGLS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTESNFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P +   ++   +   K V++R       V   G +G      K+  + +     + 
Sbjct: 208 VRTVPGQGRLLVNGREDSLKRVLER--GCWSEVEQFGAEGGSGW--KIANLSDDDSFDVV 263

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+      + L G+    NAL A      +G+  A  +E L +   V  R E  GT  
Sbjct: 264 FNGQPLGRVRWALQGDHNRMNALGAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-V 322

Query: 354 RGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
               +Y D+AH   ++   ++   R +  GRI+ V          G        +L  AD
Sbjct: 323 NDVTVYDDFAHHPTAIRTTIEGLRRRVGEGRILAVLEPRSNTMKLGVMKQALPDSLSGAD 382

Query: 412 IAI-VTDDNPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
                   N R     D     A +      F +    ++A+  A       D ++V   
Sbjct: 383 QIFAYGAANGRDAIGWDLAGALAPLGQRAKAFSDLTALVDAVTAA---ARPGDHVLVMSN 439

Query: 468 G 468
           G
Sbjct: 440 G 440


>gi|42519540|ref|NP_965470.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus johnsonii NCC
           533]
 gi|48428300|sp|P61680|MURC_LACJO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|41583829|gb|AAS09436.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus johnsonii NCC
           533]
          Length = 437

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 126/409 (30%), Gaps = 64/409 (15%)

Query: 83  SATIRSNTPILVV-------DNTRKFLSLFASRLYGKHPENI---------LAVTGTSGK 126
            A I+SN   ++V       DN      L  +  +  +P+ +         + V+GT GK
Sbjct: 59  PANIKSNAEQVIVKGNAFKQDNPEVAACLDKNVEWQSYPDTVEEIVQMHTSIGVSGTHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S +  +      +S+ IG                 S  ++ +A  Y       H  
Sbjct: 119 TSTTSLLAHVLGEVAPTSYLIGDGRGKG--------VEGSRFFVYEADEYRRHFLAYH-- 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH DY + Q  Y +A     ++    +    +
Sbjct: 169 -----------------PDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQ---TKKALFV 208

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           + DD   + +            + G++         +       +  +   GKD   F  
Sbjct: 209 WGDDKRLQSL-----KTDIPKYTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEI 263

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  + N      +     +    + E L        R  F   +     +  DYAH
Sbjct: 264 HLFGDHSILNTTAVIAVAYTEKVPMDDIKEGLLTFKGAKRR--FAEKDFGDVSVIDDYAH 321

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RS 422
               +   ++  R       ++VVF         K     +  L   D A VT       
Sbjct: 322 HPTEMRATIQAARQKFPDKELVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAR 381

Query: 423 EDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E    I   ++++ IPG      + I  +       +K  V+V  G G 
Sbjct: 382 EASGDISSEDLVNNIPGSEVIDLDNIADLTK-----HKNAVVVFMGAGD 425


>gi|126172652|ref|YP_001048801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS155]
 gi|125995857|gb|ABN59932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS155]
          Length = 439

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 131/400 (32%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  +      +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVPA--------------------LDLLHENADLFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++        +  
Sbjct: 162 ELSSFQLE--TTHSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----SRAVLFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD  +               S G          +      H   ++    E        
Sbjct: 216 RDDKLT------VPPEPMNQNSFGLAAPETDEWGISDSKIYHGSSEIMPITE-------V 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  L   +G+D  ++ +       +  R E VG  +    +    A 
Sbjct: 263 SLIGSHNHANLLAAMALVDVVGVDKQVMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +    L  +        I++   G  +    +P+   +A       ++T       D
Sbjct: 323 NVGATVAALDGLSDHLG--DIILIAGGDGKGADFKPLGVALAKVTH---LITL----GRD 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +KI A       G +       A+  A E+    D++++
Sbjct: 374 GKKIAAL----KDGAVRVETMAAAVTKAAELATSGDIVLL 409


>gi|296332043|ref|ZP_06874507.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675562|ref|YP_003867234.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150814|gb|EFG91699.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413806|gb|ADM38925.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 432

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 126/394 (31%), Gaps = 53/394 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +    +    P++      KFL  +  +         +AVTG  GK+S    +  + Q 
Sbjct: 75  PEIEKAMSDGIPVI---RYHKFLGDYMKKF------TSVAVTGAHGKTSTTGLLAHVIQN 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +SF IG  +   +   +      +  Y    LSY                       
Sbjct: 126 AKPTSFLIGDGTGQGNENSEY-FVFEACEYRRHFLSY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              +      TN+  DH DY  +    F+A   +  ++       I   DD +  ++   
Sbjct: 162 ---QPDYAIMTNIDFDHPDYFSSIDDVFDAFQEMALQV---NKGIIACGDDEHLPKIHA- 214

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
             N        G +  F   + +          + V    +D F  P  G   V N+L  
Sbjct: 215 --NVPVVYYGTGEENDFQ-ARNIVKSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC    IDS+++   L+    V  RF       +   +  DYAH    +++ ++  R 
Sbjct: 272 IALCHYEEIDSSIIKHALKSFGGVKRRFNEKQLGDQ--VLIDDYAHHPTEIKVTIEAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHG 435
                 I+ VF         +       +L  AD   + D      E+  K+   ++   
Sbjct: 330 KYPDREIVAVFQPHTFTRTQQFLDEFAESLSGADCVYLCDIFGSARENAGKLTIGDLQGK 389

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I           ++  A E      VL+  G G 
Sbjct: 390 IHNAKLIEEDDTSVLKAHEKA----VLIFMGAGD 419


>gi|29348856|ref|NP_812359.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298387937|ref|ZP_06997486.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 1_1_14]
 gi|29340762|gb|AAO78553.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298259344|gb|EFI02219.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 1_1_14]
          Length = 467

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 128/367 (34%), Gaps = 43/367 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      I  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQS-----HIECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T    DH+D + T++AY  +   
Sbjct: 155 --NLLLSQKSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTEKAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V      AG RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QAGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                   +     +P    + N + A  L    G+    + + +     V  RF+F   
Sbjct: 264 FVAPDTRINNIQLGVPVSINIENGVAAMALAHLNGVTDEEIRQGMNSFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N +      DYAH  + ++  + +IR +   + I  +F                 +L L 
Sbjct: 324 NDQ-VVFLSDYAHHPSEIKQSVLSIRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D  I+ D  P  E P      + I   +  GI   + K    E I   + +L  +++ ++
Sbjct: 383 DEVILVDIYPARETPIPGVTSKLIYDNLRPGIEKSMCK---KEEI---LNILKDKNIEVL 436

Query: 464 V-AGKGH 469
           +  G G 
Sbjct: 437 ITLGAGD 443


>gi|292490622|ref|YP_003526061.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
 gi|291579217|gb|ADE13674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
          Length = 452

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 163/436 (37%), Gaps = 60/436 (13%)

Query: 36  DSRHIQAGWIFVA-----IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           DSR    G   +A     + G       F   A+ Q AE +V+S   +L + +  +    
Sbjct: 41  DSREAPPG---LAALQEQVPGVAVRLGDF-EVALMQQAERLVISPGVALSEPAIQVAQAR 96

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I V+ +   F        + + P  ++A+TG++GKS+V   V+ + +++G      G  
Sbjct: 97  GIPVLGDIELF------AYWAQAP--VIAITGSNGKSTVTVLVEAMARQAGKKVLSGGNL 148

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                                 AL  L         +E SS  L+      +  +A    
Sbjct: 149 GL-------------------PALELLEKPVPDLYVLELSSFQLE--TTSTLNAVAACIL 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +   +AY  AK R++          +I ADD     + +   +     L  
Sbjct: 188 NISPDHMDRYPNLEAYVQAKGRVYHG----TGAMVINADDVQVAGLAQPERHCLRFTLGA 243

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               ++   ++       +   + +  + F    PL G   + NAL A  L  A G+   
Sbjct: 244 PAADEYGLRERAGETWLARGHELLLPARQF----PLVGRHNLANALAALALGEAAGLPQL 299

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMILKNIRTITSGRIIVVF 388
            +L  L +   +P R E+V   +      VD+ + S   ++   +  I  +     +V+ 
Sbjct: 300 AMLSALREFRGLPHRCEWVAQANG-----VDWYNDSKGTNVGATVAAIEGLHCQGKLVLI 354

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
             G  +     P+   ++     + ++  D PR E      A + + +P + +  +  EA
Sbjct: 355 AGGVGKGADFSPLCAPLSRRARAVVLMGQDAPRLE------AALANSVPLY-QVNDMGEA 407

Query: 449 IRTAIEMLNKQDVLVV 464
           +  A  +    D +++
Sbjct: 408 VNKASALAEPGDSVLL 423


>gi|254373067|ref|ZP_04988556.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570794|gb|EDN36448.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 561

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 133/378 (35%), Gaps = 29/378 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDELIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKV 282
             AK  +F  L  + S  II  D++Y KE   +   A   V     Q    +        
Sbjct: 283 AEAKSIVFRAL-GQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYA 341

Query: 283 CAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           C + +   V +    K       +         +  + NA++A  L   +GI   ++ + 
Sbjct: 342 CIVEDGNFVWVEANSKKVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKA 401

Query: 336 LEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG 392
           L          R              +DYAH    +E +L  ++     G+  ++ G  G
Sbjct: 402 LRSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTG 461

Query: 393 DRDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKG 443
           DR      I   +     D  ++  T+   R     E P  IR ++      I       
Sbjct: 462 DRKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISH 521

Query: 444 NRIEAIRTAIEMLNKQDV 461
             I+ ++  +E L   D+
Sbjct: 522 GEIDGVKFLVEKLESNDM 539


>gi|328957125|ref|YP_004374511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
 gi|328673449|gb|AEB29495.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
          Length = 470

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 109/285 (38%), Gaps = 26/285 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +E SS  L    +  ++      TN+   H+DYH T++ Y  AKM + +    +E 
Sbjct: 173 DEIIMELSSFQLM--GITELRPHIAVITNIYSAHLDYHGTREEYVAAKMSITKNQT-EED 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+  D    +E+ +++               F   + +      Q   I  +G+    
Sbjct: 230 YLIVNWDQPELRELSQQSKATIVP---------FSRKEILETGVYLQDDVIYYQGEPVMA 280

Query: 303 --LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG+  V NA+ A  +   +  ++ ++   LE+   V  R +FV   +   R + 
Sbjct: 281 KETILIPGDHNVENAMAAIAVAKLLNQENGVIRTSLEQFTGVKHRTQFVREWNE--RRFY 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           + +  +N+L      ++       I++   G DR      ++  +   +  + +      
Sbjct: 339 NDSKATNTL-ATENALKGFD--VPIILLAGGLDRGNNFDELIPVMNKKVKALIVF----- 390

Query: 421 RSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E   K+       GIP  I   N   A+  A E+    DV+++
Sbjct: 391 -GETAMKLSETGTEAGIPTIISVQNVEAAVPVAYELSEPNDVILL 434


>gi|299536845|ref|ZP_07050152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727669|gb|EFI68237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 464

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 129/339 (38%), Gaps = 21/339 (6%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            + I  +  ++ V N  +    F      +    I+A+TGTSGK++    ++ I      
Sbjct: 71  PSDIPDHVMLIQVANAEEAYWKFVHFYRSQFHIPIVAITGTSGKTTTKEMIKHILSADRK 130

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +      +T+SS ++           L   L                S G   +     
Sbjct: 131 VTA-----TTLSSNSR--------TASLQYLLGIEDDTEAAVFETAVGSPGDVTNAGRYF 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G  TN+G  H++Y +T + Y  AK  + + + PK    II A+D  +K++      
Sbjct: 178 KPTIGIITNIGAHHLNYCKTLEGYIQAKGEMVDIIHPK-GTLIINAEDMNTKKI--DVSR 234

Query: 263 AGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              R++ VG +         +       +  +  + K +D L P  GE QVYNAL A   
Sbjct: 235 FRGRLIKVGKHDSCDFRASHIHYYQKGMKFILHHDRKSYDILVPGFGEHQVYNALAAIAA 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+   +  + L+   ++  + +     +    +   ++ T+ SLE  LK +  +  
Sbjct: 295 VHDMGMPIPVAAKQLQSFRLLKKQLQLFEGINHSMLLDDTWSITTTSLEAALKVLNELGD 354

Query: 382 G-RIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVT 416
           G + I V G   D            G++   +    ++T
Sbjct: 355 GKKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLIT 393


>gi|315606654|ref|ZP_07881665.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccae ATCC
           33574]
 gi|315251664|gb|EFU31642.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccae ATCC
           33574]
          Length = 458

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 140/420 (33%), Gaps = 49/420 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP A  + A  +VV +     D             ++   + L        G      L 
Sbjct: 63  IPHACKKPASTLVVYTPAIPADHKELTFFREGGFEIEKRAQVLGTLTRTHKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           V GT GK++ ++    I  +S       +G  S   ++  +  L+  S   + +A  +  
Sbjct: 117 VAGTHGKTTTSTMCAHIMHQSQQDCNAFLGGIS--KNYGTNYILSDKSDFVVIEADEFDR 174

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S    H  +                      T+   DH+D + T++AY  +  R + EL+
Sbjct: 175 SFHWLHPWM-------------------SVITSTDPDHLDIYGTKEAYLES-FRHYTELI 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I++ +    + V +     G RV          H + +   + +         +
Sbjct: 215 QPGGALILHKNLEMQQHVQE-----GVRVYEYSLDEGDFHAENIKIENGEITFDFISPVE 269

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                +   P    + N + A  +    G  +  +   ++    V  RF+F   N R   
Sbjct: 270 CVRNVMLGQPVPINIENGVAAMAMAQLNGCTAEELRYGMKTYAGVDRRFDFKIKNDRH-V 328

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              DYAH    +    K+IR +   R I  +F                 +L L D  I+ 
Sbjct: 329 FLSDYAHHPKEIYQSAKSIRELYKDRKITAIFQPHLYTRTRDFYQDFANSLSLLDEVILC 388

Query: 417 DDNPRSEDPEK------IRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D  P  E P +      I   +  G+    I K + ++ ++         DVL+V G G 
Sbjct: 389 DIYPAREKPIEGVTSKLIYDNLKPGVEKSMIHKEDVLDLVK-----SRDFDVLLVLGAGD 443


>gi|254434589|ref|ZP_05048097.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Nitrosococcus oceani AFC27]
 gi|207090922|gb|EDZ68193.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Nitrosococcus oceani AFC27]
          Length = 448

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 99/307 (32%), Gaps = 22/307 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ +S +  I + +G      GP   I    Q+      +   L +
Sbjct: 89  QGRWVLAVAGTHGKTTASSLLAWILEYAGH-----GPGYLIGGVPQN----FGASARLGR 139

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +  ++        +          +R            NL  DH D     +A    +  
Sbjct: 140 SPYFVVEADEYDTAFFDKRSKFIHYR-----PRTLILNNLEYDHADIFPHLEAIQQ-QFH 193

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQV 291
                +P     ++ + D     V+         V+++G  G         A+  +    
Sbjct: 194 YLVRTVPNNGLILVPSGDKALATVLSM--GCWTPVVNMGIAGGVGSALAARAVADDGSNF 251

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  E        +PL G   V N L A G     G+      + LE+   V  R E  G
Sbjct: 252 EVWYENSCQGQVHWPLLGHHNVANGLAAIGAARHAGVPIGQGCQALERFQGVRRRLEVCG 311

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALD 408
               G  +Y D+AH   ++   L  +R       I+            G        AL 
Sbjct: 312 -KVNGVTVYDDFAHHPTAISKTLAGLRARVGKARIIAVLEPRSNTMKLGVHKDSLAPALA 370

Query: 409 LADIAIV 415
           LAD  ++
Sbjct: 371 LADRVLI 377


>gi|113955473|ref|YP_731457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9311]
 gi|113882824|gb|ABI47782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9311]
          Length = 466

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 118/354 (33%), Gaps = 33/354 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A           + +TGT+GK++V   +  +  ++GL +   G              
Sbjct: 98  GEMAVAWQALCKCPWIGITGTNGKTTVTHLLHHVLNQAGLYAPMAGNVG----------- 146

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   L       +      + +E SS+ ++      ++   G +T L  DH++ H +
Sbjct: 147 --DSAAELGLQCMDPAQTKPDWIVMEMSSYQIESA--IEVRPTIGIWTTLTPDHLERHGS 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             AY + K    + LL +   A++ ADDA     ++  H        +           +
Sbjct: 203 MDAYRDIK----KGLLQRSEHAVLNADDAD----LQSRHADWPDAQWISSAQNKCEPSNL 254

Query: 283 CAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               N +    S +G  F      + GE    N L+     +  G+++  +   L     
Sbjct: 255 ELWINPEGFVCSKKGALFPANALAMLGEHNRQNMLLVTAAALQTGLEAQAIERGLRSFPG 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R E +G+           A   ++  + L+ + +      I +   G  +       
Sbjct: 315 VPHRLESLGSLHGMNVFNDSKATNYDAAAVALQAVPS-----PIALLAGGLSKQGDASGW 369

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
           +  +   +  IA+   D  R      IR     G           +A+  AIE 
Sbjct: 370 LQLLHDKVCSIALFGSD--RDILLGLIRNSGYTG--DVTSHPTMADAVAAAIEQ 419


>gi|29832662|ref|NP_827296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           avermitilis MA-4680]
 gi|60390553|sp|Q82AD8|MURD_STRAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29609782|dbj|BAC73831.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces avermitilis MA-4680]
          Length = 467

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 154/438 (35%), Gaps = 56/438 (12%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G E IV +  +      F+A   +  P+    +        A RL G      LAVTGT+
Sbjct: 68  GTELIVTTPGWQPDKPLFAAAAEAGVPVW--GDV-----ELAWRLRGPGSAPWLAVTGTN 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I   +GL +  +G                     ++   + L  +    
Sbjct: 121 GKTTTVQMLASILTAAGLRTAAVGNIG------------------VSLLDAVLGEETYDV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  + +  N+  DH+D+H + +AY   K R++E    + +  
Sbjct: 163 LAVELSSYQL--HWAPSLRAHSATVLNIAPDHLDWHGSMEAYTADKGRIYEG--NRVACV 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
              AD A    V       GCR +             V       +  +    K+   L 
Sbjct: 219 YNVADKATEDLVRAADVEEGCRAVGFTLGTPGPSQLGVVEGILVDRAFVEDRQKNAQELA 278

Query: 304 ----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                  P    + NAL AA L  A G+ ++ V + L        R          G  Y
Sbjct: 279 EVADVHPPAPHNIANALAAAALARAFGVPASAVRDGLRAFRPDAHR--IAHVADVDGVTY 336

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +D +  +N+          + +   IV    G  +      ++ K A  L  + ++  D 
Sbjct: 337 IDDSKATNTHAAEAS----LAAYGSIVWIAGGLAKGASFDELVAKSAQRLRGVVLIGADR 392

Query: 420 PRSEDPEKIRAEIIHGIPGF-IEKGNRIE------AIRTAIEMLNKQDVLVVAGKGHETV 472
                   IR  +    P   +   +R +      A++ A  +    D +++A     ++
Sbjct: 393 ------ALIREALARHAPEVPVVDLDRTDTGAMPAAVQEARRLAVAGDTVLLA-PACASM 445

Query: 473 HIVTNGEKKMSVDCDIIR 490
            +  N  K+     + +R
Sbjct: 446 DMFANYNKRGDAFAEAVR 463


>gi|319946445|ref|ZP_08020682.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus australis
           ATCC 700641]
 gi|319747413|gb|EFV99669.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus australis
           ATCC 700641]
          Length = 444

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 103/333 (30%), Gaps = 39/333 (11%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVASFVQQICQRSGLSS 144
             N   +   + + +         G+   + +++   G  GK+S    +  +      +S
Sbjct: 73  PENNVEIAYADAQGYTYQRYHEFLGEFMRDFVSMGVAGAHGKTSTTGILSHVLSNITDTS 132

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           + IG  +   S                        +G  +   E  S   ++H +     
Sbjct: 133 YLIGDGTGRGS------------------------KGAKYFVFE--SDEYERHFMPY-HP 165

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+  DH DY    +  FNA     +++        IY +D   + +     NA 
Sbjct: 166 EYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQI---SKALFIYGEDPELRRITA---NAP 219

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCI 323
                   +G       +         T+   G+D   F  P  G   + NA    GL  
Sbjct: 220 IYYYGFEEEGNDFVASDLLRSTTGSTFTVHFRGEDLGQFQIPSFGRHNIMNATAVVGLLY 279

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
             G D  LV EHL+    V  RF     N     I  D+AH    +   L   R    S 
Sbjct: 280 IAGFDLDLVREHLKTFGGVKRRFTEKIVND--TVIIDDFAHHPTEIIATLDAARQKYPSK 337

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I+ VF                 AL+ AD   +
Sbjct: 338 EIVAVFQPHTFTRTIALLDEFADALNQADAVYL 370


>gi|239931807|ref|ZP_04688760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291440176|ref|ZP_06579566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291343071|gb|EFE70027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 472

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 148/440 (33%), Gaps = 56/440 (12%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G + IV +  +      F A  R+  P+    +        A RL        LAVTGT+
Sbjct: 73  GTDLIVTAPGWKPDKPLFVAAERAGVPVW--GDV-----ELAWRLRRPDSAPWLAVTGTN 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +GL +  +G                     ++   + L  +    
Sbjct: 126 GKTTTVQMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGEEEYDV 167

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    ++  +    NL  DH+D+H + QAY   K R++E    + +  
Sbjct: 168 LAVELSSYQL--HWAPSLRAHSAVVLNLAPDHLDWHGSLQAYAADKGRIYEG--NRVACV 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
              AD A    V +     GCR +             V       +  +    +    L 
Sbjct: 224 YNVADKATEDLVREADVEEGCRAVGFTLGTPGPSQLGVVEGILVDRAFVEDRYRSAQELA 283

Query: 304 ----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                  P    V NAL AA L  A G+ +  V + L        R   V        + 
Sbjct: 284 EVSDVNPPAPHNVANALAAAALARAFGVPATAVRDGLRAFTPDAHRIAHVADVDGVAYVD 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A  +++ E  L     +           G  +      ++   A  L    ++    
Sbjct: 344 DSKATNTHAAEASLAAYEPVVW------IAGGLAKGATFDELVAGAAKRLRGAVLI---- 393

Query: 420 PRSEDPEKIRAEIIHGIPGF-IEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHETV 472
               D   IR  +    P   +   +R       +A++ A  +    D +++A     ++
Sbjct: 394 --GRDRALIREALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLA-PACASM 450

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            +  N  ++       +RE+
Sbjct: 451 DMFANYNRRGEAFAQAVREL 470


>gi|147678198|ref|YP_001212413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pelotomaculum
           thermopropionicum SI]
 gi|189082913|sp|A5D147|MURD_PELTS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146274295|dbj|BAF60044.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 455

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 139/438 (31%), Gaps = 76/438 (17%)

Query: 64  IAQGAEAIVVS------SAYSLQDFSAT---------------------IRSNTPILVVD 96
           + +GA  ++            L+D +A                      +    P L V+
Sbjct: 27  VKKGASVVLADAGKPDYPDGELEDLTAAGVELSLGGYPGVGKESVDLVVVSPGVP-LTVE 85

Query: 97  NTRKFLSL---------FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             R  +            A          I+AVTGT+GK++  + + +I + +G+++   
Sbjct: 86  PVRAAVREGIPVTGELELAYYFTRSP---IVAVTGTNGKTTTTTLIGEIFKDAGMNTLVG 142

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G     S    +     P                   +  E SS  L+       +   G
Sbjct: 143 GNIG--SPLIAEVERYGPD----------------DVIVAEVSSFQLETA--STFRPKVG 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH+D H T   Y   K R+F    P +  A++  DD  +  +         RV
Sbjct: 183 VVLNITPDHLDRHGTMGNYAATKARMFANQGPGD-FAVLNCDDPLAASLKA---GVRSRV 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +    + +      V        +    E         LPG   + NAL A     A+GI
Sbjct: 239 IFFSRRKELKEGVWVSGGMIVASLNGHREVVCRSDELGLPGAHNLENALAAVAAAKAMGI 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +S  +   L +   V  R EFV        I        ++    L++      G  IV+
Sbjct: 299 ESNSLAGTLRRFKGVAHRLEFVAEVDGVRYINDSKGTNPDAAIKALES-----YGEPIVL 353

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRI 446
              G ++    R    K+      + ++       +    I  A    G    +      
Sbjct: 354 IAGGKNKGSDFREFARKVKEKAKVLVVL------GQSAGLIAEAARAEGFENILYADGFR 407

Query: 447 EAIRTAIEMLNKQDVLVV 464
           EA+  A  +    D++++
Sbjct: 408 EAVLLARRVARPGDIVLL 425


>gi|229543492|ref|ZP_04432552.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
 gi|229327912|gb|EEN93587.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
          Length = 437

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 115/341 (33%), Gaps = 49/341 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    ++   P++      KFL  F            +AVTG  GK+S    +  +   
Sbjct: 75  EEIDEAMKRGIPVI---RYHKFLGEFLKNF------TSVAVTGAHGKTSTTGLLAHVMHE 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG  +              +  ++ +A  Y               H L  H  
Sbjct: 126 IKPTSYLIGDGTGKG--------VPGAEYFVFEACEY-------------RRHFLSYH-- 162

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+  DH DY+      F+A   +  ++   +   I Y DD   +++  +
Sbjct: 163 ----PDYAIMTNIDFDHPDYYANIDDVFSAFQEMALQV---KKGIIAYGDDEQLQKIQAK 215

Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
                  V+  G++ G     + +       +  + V    +  F  P  G   V NAL 
Sbjct: 216 VP-----VVFYGFEEGNDFQARNIVTEPQGTKFDVVVRNNFYGTFEIPSFGNHNVLNALG 270

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              LC   GI+   V  HL+  H V  RF      ++   I  DYAH    ++  +   R
Sbjct: 271 VIALCQYEGIEKEAVETHLKTFHGVKRRFTEKEIGTQ--IIIDDYAHHPTEIKATIDAAR 328

Query: 378 -TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                  ++ VF                 +L+LAD   + D
Sbjct: 329 KKYPERELVAVFQPHTFSRTQAFLTEFAESLNLADRVFLCD 369


>gi|294674973|ref|YP_003575589.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella ruminicola 23]
 gi|294472650|gb|ADE82039.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella ruminicola 23]
          Length = 457

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 123/361 (34%), Gaps = 42/361 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V GT GK++ ++    I  +S L          +   +++                  
Sbjct: 115 LCVAGTHGKTTTSTMCAHIMHQSQLDCNAF-----LGGISKNYGTNYILSDS-------- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 162 -----DYVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II+ D       MK+    G R+          H + +   + +         
Sbjct: 213 IQPGGALIIHRDLE-----MKQNVQEGVRIYDYSLNEGDFHAENIRIDNGEITFDFISPI 267

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   +     P    + N + A  +    G  +  +   ++    V  RF+F    +   
Sbjct: 268 ESVKNVQLGQPVPINIENGIAAMAMAQLNGCTADELKYGMQTYGGVDRRFDF-KIKTDKL 326

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DYAH    +    K+IR +   + I  +F                 AL   D  I+
Sbjct: 327 VFLSDYAHHPKEIYQSAKSIRELYKNKHITAIFQPHLYTRTRDFYKDFADALSQLDEVIL 386

Query: 416 TDDNPRSEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T+  P  E P      + I   +  G+    I+K + ++ I+      +  +VL+V G G
Sbjct: 387 TEIYPARELPIEGVTSQLIYDNLKPGVQKKMIQKADVLDYIKD-----HDFEVLIVLGAG 441

Query: 469 H 469
            
Sbjct: 442 D 442


>gi|167856476|ref|ZP_02479193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
 gi|167852399|gb|EDS23696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
          Length = 432

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 140/394 (35%), Gaps = 59/394 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +L            + VV +   F          +    I+A+TG++GKS+V 
Sbjct: 70  IVISPGLALATAEIQQAIQAGVEVVGDIELF--------CREAKAPIIAITGSNGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +   ++ +++G+     G                        ALS L         +E S
Sbjct: 122 TLTTEMAKQAGVKVGMGGNIGV-------------------PALSLLKGD-YELYVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +++ + Y  AK++++          I+  +D
Sbjct: 162 SFQLE--TTYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIYHHAEN----VIVNGED 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +   ++A  +  +      +    +      +++  +  I+++         + G  
Sbjct: 216 P--QTFPEQAVGSLKKF----AEKDAEYTACNGELYSGDEAVIAID------ELKITGRH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL +  L  A G+D + +++ L+    +  RF+ V TN     I    A    S  
Sbjct: 264 NVMNALASMSLAEATGVDRSGIVKALQSYSGLDHRFQLVPTNDGVRWINDSKATNVGSTV 323

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  ++    G + ++   G  +D     +   I            D           A
Sbjct: 324 AALNGLQ--VEGTLYLLL-GGDGKDADFSELKPFINQPNTVCYCFGKDG----------A 370

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E+    P  +      +A+      L   D++++
Sbjct: 371 ELAALTPNSVLVETMAQAVAQIRLRLKAGDMVLL 404


>gi|296133661|ref|YP_003640908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermincola sp. JR]
 gi|296032239|gb|ADG83007.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermincola potens
           JR]
          Length = 454

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 97/278 (34%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K       N   DH+D H T + Y  AK R+FE   P++  A++ 
Sbjct: 165 EVSSFQLE--CIHRFKPKVSIILNFTPDHLDRHGTFENYILAKARIFENQGPED-FAVLN 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD    +V   A     +V+    + K      V        +    +         + 
Sbjct: 222 FDDP---KVAACAEQVKAQVIFFSRRHKLEKGVYVRQDRIIIDLGQGSKDVCSVKDIFIR 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A      +G++  ++ E L     VP R E V        I        +
Sbjct: 279 GNHNLENALAATAAAATLGVEPEVIAEVLRTFRGVPHRMEHVAEIDGVAYINDSKGTNPD 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L +         +V+   G ++         K+   +  + ++       E  ++
Sbjct: 339 AAMKALDSYDQ-----PLVLIAGGRNKGSDFTAFAAKVREKVRALVVL------GECADE 387

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   +   G           EA+R A E+ N  +++++
Sbjct: 388 IIESMNKVGFSNIYRAHTLEEAVRKAAEVANPGEIVLL 425


>gi|260591745|ref|ZP_05857203.1| UDP-N-acetylmuramate--alanine ligase [Prevotella veroralis F0319]
 gi|260536029|gb|EEX18646.1| UDP-N-acetylmuramate--alanine ligase [Prevotella veroralis F0319]
          Length = 459

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 129/377 (34%), Gaps = 47/377 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ ++    I  +S L          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHKSHLDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSDHSDYVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II     +    MK+    G +V     +    H + +               
Sbjct: 214 IQPGGALII-----HKNLEMKQHVQEGVKVYDYSREEGDFHAENIRIEKGTITFDFVSPI 268

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   D     P    + N + A  +    G  +  + E +     V  RF+F   N R  
Sbjct: 269 ETVKDVELGQPIPINIENGIAAMAMAQLNGCTAEELREGMRTYGGVDRRFDFKIKNDRH- 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DY H    +    K+++ + + R I V+F                 AL   D  I+
Sbjct: 328 VFLSDYGHHPKEILQSAKSLKELYADRKITVIFQPHLYTRTRDFYKDFADALSHFDEVIL 387

Query: 416 TDDNPRSEDPEK------IRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T+  P  E P +      I   +   I    I+K + ++ +R         DVLVV G G
Sbjct: 388 TEIYPAREQPIEGVTSKLIYDNLRPNIAKQMIKKDDVLDFVR-----SRDFDVLVVLGAG 442

Query: 469 H------ETVHIVTNGE 479
           +      E   I+   E
Sbjct: 443 NLDNYVPEITKIIKAKE 459


>gi|239917860|ref|YP_002957418.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus NCTC
           2665]
 gi|239839067|gb|ACS30864.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus NCTC
           2665]
          Length = 495

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 125/389 (32%), Gaps = 48/389 (12%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A  + G     +LAV GT GK++ +S        +G         + ++    + R   
Sbjct: 112 LALAMRGH---RVLAVAGTHGKTTTSSMAAMAFSDAGWDPTFA-VGAAVAGLGTNAR--- 164

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                        + QG   ++    S G     L       G  T +  DH+D++ T++
Sbjct: 165 -------------AGQGEWFIAEADESDG----TLVNYPSTIGIVTTVEADHLDHYGTEE 207

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLK 280
           A      R F   LP  +   +             A  A       V++ G   +     
Sbjct: 208 AVHQV-FRDFAGGLPAAAQGGVLVACLDDAGAADLAAWAREHAAADVVTYGSAPRDGVAP 266

Query: 281 KVCAIH---------NKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +               Q+ T    +G        +PG     NA       +  G+   
Sbjct: 267 DLLVTDLAVEPGETGVGQRATFRMADGPARTLHLQVPGRHNALNAAAVVLAAVRAGMAFE 326

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFG 389
             +  +E       RFEF G  +RG R++ DYAH    +   +   R + +  R+ V+F 
Sbjct: 327 AAVRGVEAFRGTARRFEFRGA-ARGVRVFDDYAHHPTEVAAAVSAGRAVAADARVHVLFQ 385

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIP-GFIEK 442
                           AL  AD   V       E+P        I + +  G     +  
Sbjct: 386 PHLFSRTRDFAAEFAAALSGADAVRVLPVYAAREEPMPGVDSSLIASRLTTGAAEDRVVA 445

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +R EA+R+        DV++  G G  T
Sbjct: 446 EDRAEAVRSLAAGATAGDVVLTMGAGDVT 474


>gi|288817395|ref|YP_003431742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786794|dbj|BAI68541.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751002|gb|ADO44485.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 422

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 140/388 (36%), Gaps = 56/388 (14%)

Query: 82  FSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            S  I    P+ +    R       + L      G+    ++A+TGT GKS+V      I
Sbjct: 50  LSPGIPPRHPLWIEAQKRGLEVIGEMELAYRFFKGR----VVAITGTDGKSTVTRMTYLI 105

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +    +  + G T T             S I L    S           +E SS     
Sbjct: 106 LREHFGNVLEGGNTGT-----------AFSEIVLRDPFSLAV--------LEVSSFQG-- 144

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             L   +   G+F N  RDH+D+H + + Y ++K  +F+    ++   +      YS++ 
Sbjct: 145 KTLKTFRPCCGAFLNFARDHLDWHISLEDYLHSKYNIFKHQQEEDFVVL------YSRQE 198

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNA 315
                    +      +     L++  A    ++   +S           + G     NA
Sbjct: 199 EVVNTPTRAKKYFFSSKDAHGFLREGRAYFMGEELFEVS--------KLKIYGHHNYRNA 250

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L +A +   +G+ S  + + L +   +P R E +G    G +++ D   T+  +  +   
Sbjct: 251 LASAMIAKLMGVPSETIRKVLYEFSGLPFRLELLGEWE-GVKVFNDSKATT--VNALESA 307

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++++    +I++   G D+      +   I   +    ++       E  +KI      G
Sbjct: 308 LKSMPDKSVILI-AGGRDKGGDFESLYDLILQKVRLALLI------GEAKDKIFQA-WRG 359

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                +  +  EA++ A     + D+++
Sbjct: 360 ATILEKVESLEEALKVAKAYSQRGDIIL 387


>gi|296112263|ref|YP_003626201.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis RH4]
 gi|295919957|gb|ADG60308.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis RH4]
          Length = 460

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 117/361 (32%), Gaps = 24/361 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++LAV GT GK++  + +  I Q SG+ +   IG    +++  +   L      YL K 
Sbjct: 103 RHVLAVAGTHGKTTTTTMLAWILQFSGIDTGFLIGGVPLVNTDDRRLSLAFQHSSYLGKQ 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V       S+    + +    +       NL  DH D      A    +   
Sbjct: 163 F------FVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAI-QTQFHH 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++P +   II A+    +  + +       V+     G      K+ A ++     +
Sbjct: 216 MIRMIPSKGQIIIPANTPSLETTLDK--GVWTTVVRTSLNGDAEWQAKLDA-NDGSSFWV 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + + G   V NAL A      +G+   +    L     +  R E +G + 
Sbjct: 273 HHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVKMACTALSHFGGIKRRMELIG-DV 331

Query: 354 RGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
               ++ D+AH   ++   L    + +T  RI  +          G        +  +AD
Sbjct: 332 DDILVFDDFAHHPTAISTTLDGAKKRLTPRRIWAIIEPRSNTMKLGSHRPHLAASAAIAD 391

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             I         +P+ +   +   I         + I A I          D +++   G
Sbjct: 392 QVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIIIMSNG 444

Query: 469 H 469
            
Sbjct: 445 D 445


>gi|261338915|ref|ZP_05966773.1| hypothetical protein ENTCAN_05113 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318740|gb|EFC57678.1| UDP-N-acetylmuramate--alanine ligase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 491

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 137/410 (33%), Gaps = 55/410 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +  A   +  P++     R+   + A  +  +H    +AV GT GK++  + V  I   
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIYAE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +GL    +      ++        +         ++       + +              
Sbjct: 144 AGLDPTFVNGGLVKAAGVHARLGHS------RYLIAEADESDASFL-------------- 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E++ R
Sbjct: 184 -HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPR 242

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALV 317
                 ++ + G+ +   + +++      +   T++ + K+        PG     NA  
Sbjct: 243 VGR---QITTYGFSEDADVRVEEYKQSGAQGHFTLARQDKELLHVTLNAPGRHNALNAAA 299

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTSNSL 369
           A  +    GID   +L  LE       RF+F+G          S    +  DY H    +
Sbjct: 300 AVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLDAVNGKSGSAMLVDDYGHHPTEV 359

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +  +K  R       ++++F                  L   D  ++ D     E P  I
Sbjct: 360 DATIKAARAGWPDKNLVMIFQPHRFTRTRDLYDDFANVLSQVDTLLMLDVYSAGETP--I 417

Query: 429 RAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
                  +   I    +++ I         E+L       D++++ G G+
Sbjct: 418 PGADSRSLCRTIRGRGKVDPILVPEPAQVAEILAPVLTGNDLILIQGAGN 467


>gi|187777501|ref|ZP_02993974.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
 gi|187774429|gb|EDU38231.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 122/362 (33%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P NI  VTG+ GK++  + V ++ ++ G  ++  G   T                
Sbjct: 111 FIKYCPANIFGVTGSDGKTTTTTLVYEMLKKEGYKTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVE 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  +  + K A              KF  ++KV      
Sbjct: 210 AKKNIFKYQ-ENNDLLVLNKDDELTNRMEKEALGNIL---------KFSLVEKVYDGACL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +++ GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTILGKEVCDSKDIKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+     G + Y D   +S S     + +  + +    V+   GG   +     + +  
Sbjct: 319 EFI-REVNGVKYYNDSIASSPS-----RTLAGLNAFEKPVILIAGGYDKKIPFEPLAEEG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQD 460
            D     I+  D        KI++     I         +   +  EA++ A ++  K D
Sbjct: 373 YDKIKTLILMGD-----TKSKIKSAFEKVILDKKCKIEIVMVNSMEEAVKVADDISEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|16080031|ref|NP_390857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310923|ref|ZP_03592770.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315250|ref|ZP_03597055.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320167|ref|ZP_03601461.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324448|ref|ZP_03605742.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3183540|sp|P40778|MURC_BACSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2293216|gb|AAC00294.1| putative UDP-N-acetylmuramate-alanine ligase [Bacillus subtilis]
 gi|2635463|emb|CAB14957.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485412|dbj|BAI86487.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 432

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/394 (18%), Positives = 126/394 (31%), Gaps = 53/394 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +    +    P++      KFL  +  +         +AVTG  GK+S    +  + Q 
Sbjct: 75  PEIEKAMSEGIPVI---RYHKFLGDYMKKF------TSVAVTGAHGKTSTTGLLAHVIQN 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +SF IG  +   +   +      +  Y    LSY                       
Sbjct: 126 AKPTSFLIGDGTGQGNENSEY-FVFEACEYRRHFLSY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              +      TN+  DH DY  +    F+A   +  ++       I   DD +  ++   
Sbjct: 162 ---QPDYAIMTNIDFDHPDYFSSIDDVFDAFQEMALQV---NKGIIACGDDEHLPKIHA- 214

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
             N        G +  F   + +          + V    +D F  P  G   V N+L  
Sbjct: 215 --NVPVVYYGTGEENDFQ-ARNIVKSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC    IDS+++   L+    V  RF       +   +  DYAH    +++ ++  R 
Sbjct: 272 IALCHYEEIDSSIIKHALKSFGGVKRRFNEKQLGDQ--VLIDDYAHHPTEIKVTIEAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHG 435
                 I+ VF         +       +L  AD   + D      E+  K+   ++   
Sbjct: 330 KYPDREIVAVFQPHTFTRTQQFLDEFAESLSGADCVYLCDIFGSARENAGKLTIGDLQGK 389

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I           ++  A +      VL+  G G 
Sbjct: 390 IHNAKLIEEDDTSVLKAHDKA----VLIFMGAGD 419


>gi|20094483|ref|NP_614330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus
           kandleri AV19]
 gi|19887585|gb|AAM02260.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus
           kandleri AV19]
          Length = 470

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 86/414 (20%), Positives = 147/414 (35%), Gaps = 52/414 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A+A  VS A         +    P  + V++    L           P   + +TGT+GK
Sbjct: 69  ADAAFVSPAIPEDAEGRKLAELVPEEITVEDVAGLLGDL-------FPVPAIGITGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    V  + +  G   +               R ++     + +A+      G     
Sbjct: 122 TTTTWAVAHLLEACGYEVW---------------RCSSLDRHLVIEAIVDGVVTGEIEGY 166

Query: 187 VEAS---SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKES 242
             A     HG  +    GI+L  G  TN+  +H+D    + + Y   K+ + E      +
Sbjct: 167 DVAVVELPHGTIR-LAAGIELDVGVLTNVSPEHLDEFGGSFERYVRRKLTITEMSEVLVA 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                      +E+ KR ++A     SV       + ++        ++ +       + 
Sbjct: 226 GYDC-------EELRKRLNDAVW--YSVRDPDADYYGRREN-----GRLVVKGPDASVEA 271

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            F L G + V N   A   C+  G D   V E L     VPGR E +G  S G   Y+D 
Sbjct: 272 DFHLIGYY-VENCTGAVAACLEFGADPEGVAEGLATFEGVPGRMELLGEFS-GRVAYIDA 329

Query: 363 AHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           AH  + L+  L   R +     GR++V         +  +   G+I  + AD    +  N
Sbjct: 330 AHNPDGLKASLPPFRELADERGGRLLVSVDNPDTVTERDKFEFGRIVGEYADFVAASGYN 389

Query: 420 PRSEDPEKIRA-EIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKG 468
              E  ++  A E++ G      +G    +  EA         + DVL+  G G
Sbjct: 390 ETLERLDRSAAEEVVKGAESAGCEGVAVDSVREAAEEVAARSEEGDVLLHVGPG 443


>gi|331266039|ref|YP_004325669.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus oralis Uo5]
 gi|326682711|emb|CBZ00328.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus oralis Uo5]
          Length = 444

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 108/352 (30%), Gaps = 43/352 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG   I+  +A+   +      ++   +      +FL  F            + V G  G
Sbjct: 60  QGDVEIIAGNAFRPDNNVEIAYADQNGISYKRYHEFLGSFMRDFV------SMGVAGAHG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S    +  +      +SF IG  +   S      +                       
Sbjct: 114 KTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD------------------- 154

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E   H +  H            TN+  DH DY  + +  FNA     +++        
Sbjct: 155 --EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLF 203

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           +Y +DA   E+ K   NA         +G       +         T+   G++   F  
Sbjct: 204 VYGEDA---ELRKITANAPIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHI 260

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G   + NA    GL    G D  LV EHL+    V  RF     N     I  D+AH
Sbjct: 261 PTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--TVIIDDFAH 318

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|90020493|ref|YP_526320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
 gi|122063257|sp|Q21MH1|MURD_SACD2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89950093|gb|ABD80108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
          Length = 456

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 147/404 (36%), Gaps = 59/404 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV+S    L            + ++ +   FL+             ++ +TG++GKS
Sbjct: 76  AKQIVLSPGVPLATPEIQQAKAAGVEIIGDIDLFLAE--------RKAPVVGITGSNGKS 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V    + +G++    G                         L  L+   V    +
Sbjct: 128 TVTTLVGLAAENAGMNVAVGGNIGV-------------------PVLDLLADADVELYVL 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +L      N+  DH+D + +   Y  AK R++          +  
Sbjct: 169 ELSSFQLES--VKRAQLDVACVLNVSPDHMDRYPSLAHYCQAKQRIY----FGAKKIVYN 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            +D  +             V   G+  K  +   +   + N     +S+ G+D   +   
Sbjct: 223 LEDTLT------IPPVMAGVERYGFSSKKAVEENEKHVLLNNDTNALSLNGQDVFSVADI 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   + NAL A  +C A  I  A + + L++   +P R ++V   ++ G  Y++ + 
Sbjct: 277 KIAGAHNLKNALAALAICDAANIPFAGLKQALQEFEGLPHRCQWVA--NKNGVTYINDSK 334

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSE 423
            +N        I  +      +V   GGD        +GK+     + + ++  D P+ +
Sbjct: 335 ATNIGSAQ-AAIEGLAGQFKNIVLIAGGDGKGADFSSLGKVINQYVSAVVLIGVDAPKIQ 393

Query: 424 ---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              DP+ +           ++      A++ A  +    D++++
Sbjct: 394 AVVDPQVMC----------VKAQTLNAAVKQAALLAKSGDLVLL 427


>gi|23014458|ref|ZP_00054273.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 457

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 137/430 (31%), Gaps = 53/430 (12%)

Query: 68  AEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           A+ +V S      +      A       + VV +  + L L  +         +LAVTGT
Sbjct: 66  ADLVVWSPGIPHTHPQPHAIAEKARAANVPVVCDV-ELLGLAKAG------TRMLAVTGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +  +    GL     G   T                    AL      G  
Sbjct: 119 NGKSTTTTLLAHVLAECGLPVAAGGNLGT-------------------AALDLPELPGDG 159

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ L+      +KL A    N+  DH+  H     Y  AK R+F+ L P    
Sbjct: 160 RYVLELSSYQLEL--THSLKLGAAILLNITPDHLGRHGGMNGYIAAKRRVFDFLTP-GGA 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I  DD   + +       G RV+ +  +     L +  +  +   +       D   +
Sbjct: 217 AVIGVDDGPCRAIAAELERRGLRVVKISVES---VLTEGVSAPDGVLLDNGKPVTDLKEI 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG     NA        A G+    +   L     +  R E VG +     I    A
Sbjct: 274 PSLPGSHNWQNACAVYAAARAEGLSPKDIAAALSTYPGLAHRQELVGEDHGIAWINDSKA 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             ++++E  L     I           G  ++ G   +            I        E
Sbjct: 334 TNADAVEKALVCYEHIYW------ILGGQAKEGGIASLERHFGRIQHAFLI-------GE 380

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV---LVVAGKGHETVHIVTNGEK 480
             E   A  + G   +        A+  A  +    D+   +V+      +     + E 
Sbjct: 381 ASEA-FAATLEGKVRYTRCVTLANAVAAARNLAVSDDIPGAVVLLSPACASWDQFKSFED 439

Query: 481 KMSVDCDIIR 490
           +     D+++
Sbjct: 440 RGDTFRDLVQ 449


>gi|284046367|ref|YP_003396707.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
 gi|283950588|gb|ADB53332.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
          Length = 552

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 146/420 (34%), Gaps = 45/420 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  ++V+        +  +R     +   + R+FL     RL    P  ++ +TG+ GK
Sbjct: 145 GAVLLLVAPWLLGGVVNRMLRP----VQQADNRRFLRSAEQRLRDVRPL-VVGITGSYGK 199

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY--LSSQGVTH 184
           ++  + V ++ +  G +                   +  S + + +A++           
Sbjct: 200 TTTKACVTEVLELLGPAY--------------PTPASFNSTLGVVRAINEGLQPQHQSFV 245

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V + A   G  Q   D +    G  T +G  H++   +      AK  L  + LP E   
Sbjct: 246 VEMGAYRRGDVQELCDLVHPRIGVLTAIGPAHLERFGSLDVTEQAKGEL-ADALPAEGLF 304

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVEG------ 297
           +  ADD  +  V +    A   + +   +    +  + V   + +   T+          
Sbjct: 305 VTRADDERTLRVARTRSAARALLFAPAPHPDADVWAEDVRLENGRTHFTLVARASGDGGA 364

Query: 298 ----------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                     +  D    L G+  V N L AA + I  G+  A V   L ++     R  
Sbjct: 365 SGDGGAAAGEQRADVRARLLGDHNVANLLAAAAVGIGHGLALADVARALGRVTPPDHRLA 424

Query: 348 FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMG 403
            +   + G  +  D Y          L  +R   + R ++V     +   R+Q +   +G
Sbjct: 425 PIVNRAAGIVVIDDSYNANPEGAAAALGVLRDHPATRRLLVTPGMVELGAREQEENRRLG 484

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++A  +ADIAI+     R ED               +   +   A     E+    DV++
Sbjct: 485 ELAAGVADIAILIG--ARGEDVAAGMRAAGAPEERILVLPDGPAAHAKVAELTRSGDVVL 542


>gi|227824967|ref|ZP_03989799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acidaminococcus sp.
           D21]
 gi|226905466|gb|EEH91384.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acidaminococcus sp.
           D21]
          Length = 459

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 104/303 (34%), Gaps = 22/303 (7%)

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              +  ALS           V A         +           N+  DH + H   + Y
Sbjct: 139 AGNIGYALSKELEHMGPESYVAAELSSFQLEGMTTFHPQIACIVNITPDHFERHGNMENY 198

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            NAK ++F     ++   ++  D+   +++  RA +   RV     + K      +    
Sbjct: 199 INAKAQIFAHQTAED-VLVLNYDNEPDRKLASRAAS---RVFFFSTEEKLEKGAWIE--- 251

Query: 287 NKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +      V+G            + G     N L A   C   G+    + + L+    V
Sbjct: 252 -EGNFVFDVDGSKHVVCKVSDLKIFGAHNEQNVLAAILCCHFAGVTVENMEKVLKAFEGV 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E+V T  +G   Y D   T+   +  +K I     G +I+    G D+       M
Sbjct: 311 EHRLEYVTT-IKGVPYYNDSKATNT--DSAVKAIEAFKEGHVIL-LAGGHDKMTDLTEFM 366

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDV 461
              A     + ++ +   R      ++A   +G+   +   G+  +A+R A +M     V
Sbjct: 367 QVTARKTDALILLGEARQRF-----LKAAQKNGVKNIVMCDGSFEDAVRLAYDMAKPPQV 421

Query: 462 LVV 464
           +++
Sbjct: 422 VLL 424


>gi|254230420|ref|ZP_04923800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262395261|ref|YP_003287115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|151937053|gb|EDN55931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262338855|gb|ACY52650.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
          Length = 437

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 153/405 (37%), Gaps = 72/405 (17%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ IV +   +L   +  A +   T   VV +      LFA  +     + ++A+TG++G
Sbjct: 69  ADLIVTNPGIALATPEIQAVLAKGTT--VVGDIE----LFAWAVQ----KPVIAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL     G     +                      L  Q     
Sbjct: 119 KSTVTDLTGVMVKAAGLDVGVGGNIGVPA--------------------LDLLEQDADLY 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+F+      + A+
Sbjct: 159 VLELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFDH----AALAV 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFD 301
           +  DD       +   +A   +++ G   +   L+    +   + + Q+V  S E     
Sbjct: 213 VNRDDQ------ETFPDAEMPLVTFGSDNQDFGLEVDGNRTWLLDHGQRVVASDE----- 261

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+  + NALV   L  A G+D    L  L+    +  R + V  N +G +   D
Sbjct: 262 --LKLVGKHNLSNALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-QGVKWVND 318

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTDDN- 419
              T+ +  M   +    T    ++V G G   D    +PI   + L L       DD  
Sbjct: 319 SKATNIASTMAALSGLESTGKLYLLVGGVGKGADFSPLKPIFATLNLQLCCFGADGDDFM 378

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P  E    IR + +  +            I+     L   D++++
Sbjct: 379 PLHE--SAIRFDTMEDV------------IQQVSSQLKPGDMVML 409


>gi|330684044|gb|EGG95800.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU121]
          Length = 437

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 124/360 (34%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T       +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPGSDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY +  +  F+A    F+E+
Sbjct: 162 -------------------------DPDYAIMTNIDFDHPDYFKDVEDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                 AII + DD Y +++      A   +   G+ +   ++ K +       Q  + +
Sbjct: 193 AHNVKKAIIAWGDDEYLRKL-----EADVPIYYYGFNETDDVYAKNIQITEQGSQFDVYI 247

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+ +  FL P  G+  + N L    +     ++   + E LE    V  RF     +++
Sbjct: 248 NGEFYGQFLSPQYGDHNILNTLAVVTISYLEKMNIDNIKEALETFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R       +I VF                 +L  AD  
Sbjct: 308 --VLVDDYAHHPREINATIETARKKYPQKEVIAVFQPHTFSRTQAFLEEFATSLSAADHV 365

Query: 414 IVTDDNP--RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +     R    E    ++I+ I G            + I++L K D  V++  G G 
Sbjct: 366 FLCEIFGSIRENTGELTIQDLINRIDGSALID------ESGIDVLEKFDNAVILFMGAGD 419


>gi|227512223|ref|ZP_03942272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
 gi|227084617|gb|EEI19929.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
          Length = 460

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 135/389 (34%), Gaps = 46/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y  +  +  +    PI+            A+++       I+ VTG++GK++  + + +
Sbjct: 83  PYDNEVVARAVSEKMPIITE-------VELAAQMTD---AEIIGVTGSNGKTTTVTMITK 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I                I   A +  L + +   +   LS     G              
Sbjct: 133 ILNEE-RKKGHAYAAGNIGVSATETALKSTADDTIVMELSSFMLLG-------------- 177

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +  +       TN+  +H+DYH+T++ Y NAKMR+     P +   ++  D    ++
Sbjct: 178 ---IKKLHPHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDD-FFVVNFDSDEWRQ 233

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + KR+            +      +K   ++   +  ++ +         +PG+  V NA
Sbjct: 234 LSKRSRAQVVPFARTS-EIDRGAYEKNGKLYYNDEFIMNADD------IKVPGQQNVENA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A      +G  +  +   LE    V  R +FV   + G + Y D   T   +E     
Sbjct: 287 LAAIATAKILGKSNLAITNVLETFTGVRHRVQFV-LEADGRKFYNDSKAT--DIEATQIA 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +        IV+   G DR      ++ +    +    +        E+  +       G
Sbjct: 344 LEGFDHP--IVLLAGGLDRGYTFDKMVPQFKQHVKAAVLFGQTADLLEESLQ-----KAG 396

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    +  N  EA+  A    +  D++++
Sbjct: 397 VKNITKVDNLDEAVPAAYHYSDSGDIILL 425


>gi|222098159|ref|YP_002532216.1| udp-N-acetylmuramate--l-alanine ligase [Bacillus cereus Q1]
 gi|254765803|sp|B9J189|MURC_BACCQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221242217|gb|ACM14927.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Q1]
          Length = 436

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 111/378 (29%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              +++  +           G    F   + +    +     + V    +D F     G 
Sbjct: 207 EELQKIQAKVP---VIFYGFGEDNDFQ-ARNIQKRTDGTIFDVFVRNTYYDTFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D   V   L     V  RF       +   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
              ++  R       I+VVF         K       +L  AD   + D   + R    E
Sbjct: 321 NATIEAARQKHPEREIVVVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|114046326|ref|YP_736876.1| UDP-N-acetylmuramate [Shewanella sp. MR-7]
 gi|113887768|gb|ABI41819.1| UDP-N-acetylmuramate [Shewanella sp. MR-7]
          Length = 465

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 115/363 (31%), Gaps = 32/363 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +     I    Q+  ++         
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFL-----IGGVPQNFGVS--------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D      A     
Sbjct: 150 --ARLGESAFFVVEADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQF 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P +   I  AD    K+ ++    +      +    K  H K +    +  +
Sbjct: 208 HHLI-RTVPGQGKVIWPADSHAVKQTIEMGCWSEQETFHIAEVTKGWHAKALSDDCH--E 264

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    L + L G+  + NA++A      +G+  +  +  L +      R E +
Sbjct: 265 FEVFFDGESQGVLEWALIGQHNIENAMMAIAAARHVGVKPSAAIAALTRFVPPKRRLELL 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT   G  +Y D+AH   ++   +K IR       I +                 +A   
Sbjct: 325 GT-VHGVSVYDDFAHHPTAIATTIKGIRAKVGQSKITIVLEPRSNTMKSGVHKDTLA--- 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI----EMLNKQDVLVVA 465
              +++  D       + I   +   +   +     +  I   +          D +VV 
Sbjct: 381 --HSMLQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVSASAKAGDTIVVM 438

Query: 466 GKG 468
             G
Sbjct: 439 SNG 441


>gi|329922717|ref|ZP_08278269.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
 gi|328942059|gb|EGG38342.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
          Length = 356

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 116/361 (32%), Gaps = 53/361 (14%)

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  ++V ++ + +GLS    G   T                     LS  ++    +
Sbjct: 1   GKTTTTTWVGEMLESAGLSPIVAGNIGT--------------------PLSEAAATATEN 40

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +            +  +       N+   H+DYH     Y  +K +LF     ++  A
Sbjct: 41  DWMVVELSSFQLKGTEAFRPRIACLLNVTETHLDYHGGMDDYVASKAKLFANQTSED-TA 99

Query: 245 IIYADDAYSKEVMKRAHNAGC-----RVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEG 297
           ++  DD   + ++               L  G      +           Q    I  +G
Sbjct: 100 VLNWDDPVCRNLVPYIKAHIVPFSMSESLREGVHITPPYAPGAQDSDEDDQGRRIIYTDG 159

Query: 298 KDFDFLFP------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + F           LPG F V NA+ A  + IA G+    + E L     V  R EFV  
Sbjct: 160 EGFTHEIIRVENIGLPGRFNVGNAMAACAIAIAAGVAPDKLEEALSSFRGVEHRLEFVAE 219

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                   V Y + S +      ++   +    +V+   G DR      ++  +   +  
Sbjct: 220 LQG-----VSYYNNSKATNSKATHMALTSFKEPVVLIAGGLDRGSDYEELIPSMQGRVKA 274

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------AIRTAIEMLNKQDVLV 463
           + ++       E  EKI           I   +  E        A+R A  +    D+++
Sbjct: 275 VVLL------GETREKIANAAAKAGLKDIILVDNGEDAASTLTSAVRKAAGLAESGDIVL 328

Query: 464 V 464
           +
Sbjct: 329 L 329


>gi|312890540|ref|ZP_07750076.1| cyanophycin synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311296998|gb|EFQ74131.1| cyanophycin synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 873

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 119/358 (33%), Gaps = 36/358 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + +G     +G T++   + Q+  +          A   L    V    +E + 
Sbjct: 499 LIAHIVKNNGHR---VGFTTSDGIYVQNTMMLKGDTTGPVSAEFILKDPTVDFAVLETAR 555

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   +   G  TN+  DH+              K  +    + K+   I+ AD
Sbjct: 556 GGMLRSGLGFSQCDIGVITNIQEDHLGLSDIYNLDDLTRVKA-IVINAVKKDGWGILNAD 614

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + +   + K+A    C +              H K        +   I+++  D+     
Sbjct: 615 NEHCVRIGKKA---DCNIAYFSRHENNPVILKHAKNGGIACVCENGFITIKKGDWKIRVQ 671

Query: 306 ----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
                         F + N L A       G  +  +   LE         PGR      
Sbjct: 672 RVGLIPLTFGGTVPFMIENVLAATLAAFVWGFKTEDIKTSLETFIPSAAQTPGRMNIF-- 729

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +  R  +D+AH  +    I + ++T+ S   I +    GDR       +GKI+ ++ D
Sbjct: 730 EFKDFRFMIDFAHNPDGYNGIKEFLKTLDSPMKIGIIAGTGDRRDEDIRELGKISAEMFD 789

Query: 412 IAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
             I+  + + R      I   +I GI        +      ++AI+ A+ +      +
Sbjct: 790 HIILRQEKHLRGRTEANILGLLIEGILSVNPNASYEAIPKEVDAIKHAMTLAKPGTFI 847


>gi|126700267|ref|YP_001089164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile 630]
 gi|255101821|ref|ZP_05330798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-63q42]
 gi|255307688|ref|ZP_05351859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile ATCC 43255]
 gi|118595649|sp|Q182Y7|MURD_CLOD6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115251704|emb|CAJ69539.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Clostridium difficile]
          Length = 451

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 111/335 (33%), Gaps = 37/335 (11%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V +I  R+   ++ +G    I +   D   T+     L   LS               
Sbjct: 125 SLVGEIFSRAKRDTYVVG---NIGNPVIDTIETSSEESVLVTELSSFQ------------ 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                   +D  +    +  N+  DH++ H T + Y  AK  +F     ++   ++  DD
Sbjct: 170 -----LESIDEFRPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVED-FCVLNYDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K +  + +               ++L+    I +       +   D      LPG  
Sbjct: 224 EIVKSLADKCNAKVIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVS----LPGGH 279

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-L 369
            + N + A  +     ID  ++ + L     V  R EFV        +        +S +
Sbjct: 280 NLENCMAAIAIAYVCKIDLEVIKDVLMTFKGVEHRQEFVRNLDNVIYVNDSKGTNPDSTI 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + I    R       I++   G D+      ++      +  + ++ +     E+  K  
Sbjct: 340 KAIQSYDRP------IILIAGGMDKGSNFDELLETAKSYVKSLVLLGETASNIENCAK-- 391

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                G        +  EA++T+ E+    D++++
Sbjct: 392 ---NKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|240147080|ref|ZP_04745681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
 gi|257200757|gb|EEU99041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
          Length = 100

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           MG+ A  LAD  I+T DNPR EDPE I  +I  GI G    +I   +R  A+  A +   
Sbjct: 1   MGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHAR 60

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + D++V+AGKGHE    +  G +    D +++++ 
Sbjct: 61  EGDIIVLAGKGHEDYQEI-GGVRYPMEDKELVKKA 94


>gi|194014783|ref|ZP_03053400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           ATCC 7061]
 gi|194013809|gb|EDW23374.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           ATCC 7061]
          Length = 446

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 146/412 (35%), Gaps = 54/412 (13%)

Query: 65  AQGAEAIVVSSAYSL-QDFSATIRSNTPILVVDNT--RKFLS---------LFASRLYGK 112
            +G + I  S    + +D   TI    P +  +N   ++ L            A  L   
Sbjct: 49  EKGIDVICGSHPLRIFEDKDITILIKNPGIPYENVMVQEALRRQIPVWTEIELAYHLT-- 106

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                + +TG++GK++  + + ++ ++    +   G   T++S                 
Sbjct: 107 -SSPFIGITGSNGKTTTTTLIYEMLKQDSQKTLVAGNIGTVASEV--------------- 150

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                ++ G   +  E SS  L        +       N+   H+DYH T+  Y  AK +
Sbjct: 151 ---AANAAGDEWIVTELSSFQLM--GTVEFRPKISLILNIFDAHLDYHHTRDEYEKAKQK 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +F     ++  A+I  DD    ++ + +        SV    +     +  AI+   +  
Sbjct: 206 VFAHQ-QEDDIAVINLDDPSVVKLAEGSKAKKV-FFSVKEPVEHGAFIQHGAIYYMNEHI 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I V+         LPGE    N L A  +    G  +  +   L     V  R +FV T 
Sbjct: 264 IDVKD------VVLPGEHNQENILAAICVVKNAGCSNEAITRVLTTFGGVKHRLQFVDT- 316

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +  + Y D   T+     IL   + +++     +   GG     +   +      +  I
Sbjct: 317 IQSRKFYNDSKATN-----ILATTKALSAFEQPTILLAGGLDRGNEFDELKPFMKHVKGI 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  P+     K+  E+  GI       N  +A+  A  +  ++DV+++
Sbjct: 372 ITFGETAPKF---VKLGEEL--GIHHVKHVDNVEQAVPAAFNISEEEDVILL 418


>gi|304396564|ref|ZP_07378445.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. aB]
 gi|304356073|gb|EFM20439.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. aB]
          Length = 492

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 136/434 (31%), Gaps = 55/434 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKH 113
           IA GA         ++ D S  + S     + P LV    ++        + A  +  +H
Sbjct: 61  IALGATIYFNHRPENVTDASVVVVSSAVSQDNPELVAAREQRIPVIRRAEMLAELMRFRH 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V  I   +GL    +      ++        +         
Sbjct: 121 G---IAVAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGTHARLGNS------RYL 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +Q            
Sbjct: 172 IAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFIN 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++  DDA  ++++ R                        +        I
Sbjct: 217 FLHNLPFYGRAVMCVDDAVIRDLLPRV-GRHITTYGFSDDADLRIENYEQSGAQGHFTLI 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
             +          PG     NA  A  +    GI+   +L  LE       RF+ +G   
Sbjct: 276 RQDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDNAILAALESFQGTGRRFDLLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R      ++++VF                
Sbjct: 336 TEPVNGQPGTAMLVDDYGHHPTEVDATIKAARAGWPDKKLVMVFQPHRYSRTRDLFDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI----RTAI-EMLNK- 458
             L   D+ ++ D     E    I       +   I    +++ I      A+ EML   
Sbjct: 396 NVLSHVDVLLMLDVYSAGET--AIPGADSRSLCRAIRNRGKVDPILVPEHDALPEMLAPL 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LSGNDLILVQGAGN 467


>gi|116873037|ref|YP_849818.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|123461107|sp|A0AJ57|MURC_LISW6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116741915|emb|CAK21039.1| UDP-N-acetylmuramate-alanine ligase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 447

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 138/416 (33%), Gaps = 60/416 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG   T S           +  Y    L+Y                       
Sbjct: 126 IRPTSYLIG-DGTGSGTKNAQYFALEACEYQRHFLAY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D   +E+ K 
Sbjct: 162 ---KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--EELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
           + +          + +F   K V       +  +    +    F  P  G+  V NAL  
Sbjct: 213 SLDIPIIYFGFDEENEFQ-AKNVIKETTGTRFDVYHRDEFLASFEIPAYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V + L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVEAVKKELKTFEGVKRRFSI--TEKGNQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G   I++ +  E ++          V++  G G   V       +K+ +D +++
Sbjct: 390 TKGNHIIKEEHTEELLKY------PGAVILFMGAG--DVQKFQAAYEKV-LDNEVV 436


>gi|77165810|ref|YP_344335.1| UDP-N-acetylmuramate,
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|76884124|gb|ABA58805.1| UDP-N-acetylmuramate,
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
          Length = 460

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 99/307 (32%), Gaps = 22/307 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ +S +  I + +G      GP   I    Q+      +   L +
Sbjct: 101 QGRWVLAVAGTHGKTTASSLLAWILEYAGH-----GPGYLIGGVPQN----FGASARLGR 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +  ++        +          +R            NL  DH D     +A    +  
Sbjct: 152 SPYFVVEADEYDTAFFDKRSKFIHYR-----PRTLILNNLEYDHADIFPHLEAIQQ-QFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQV 291
                +P     ++ + D     V+         V+++G  G         A+  +    
Sbjct: 206 YLVRTVPNNGLILVPSGDKALATVLSM--GCWTPVVNMGIAGGVGSALAARAVADDGSNF 263

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  E        +PL G   V N L A G     G+      + LE+   V  R E  G
Sbjct: 264 EVWYENSCQGQVHWPLLGHHNVANGLAAIGAARHAGVPIGQGCQALERFQGVRRRLEVCG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALD 408
               G  +Y D+AH   ++   L  +R       I+            G        AL 
Sbjct: 324 -KVNGVTVYDDFAHHPTAISKTLAGLRARVGKARIIAVLEPRSNTMKLGVHKDSLAPALA 382

Query: 409 LADIAIV 415
           LAD  ++
Sbjct: 383 LADRVLI 389


>gi|321312518|ref|YP_004204805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
 gi|320018792|gb|ADV93778.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
          Length = 432

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/394 (18%), Positives = 126/394 (31%), Gaps = 53/394 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +    +    P++      KFL  +  +         +AVTG  GK+S    +  + Q 
Sbjct: 75  PEIEKAMSEGIPVI---RYHKFLGDYMKKF------TSVAVTGAHGKTSTTGLLAHVIQN 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +SF IG  +   +   +      +  Y    LSY                       
Sbjct: 126 AKPTSFLIGDGTGQGNENSEY-FVFEACEYRRHFLSY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              +      TN+  DH DY  +    F+A   +  ++       I   DD +  ++   
Sbjct: 162 ---QPDYAIMTNIDFDHPDYFSSIDDVFDAFQEMALQV---NKGIIACGDDEHLPKIHA- 214

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
             N        G +  F   + +          + V    +D F  P  G   V N+L  
Sbjct: 215 --NVPVVYYGTGEENDFQ-ARNIVKSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC    IDS+++   L+    V  RF       +   +  DYAH    +++ ++  R 
Sbjct: 272 IALCHYEEIDSSIIKHALKSFGGVKRRFNEKQLGDQ--VLIDDYAHHPTEIKVTIEAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHG 435
                 I+ VF         +       +L  AD   + D      E+  K+   ++   
Sbjct: 330 KYPDREIVAVFQPHTFTRTQQFLDEFAESLSGADCVYLCDIFGSARENAGKLTIGDLQGK 389

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I           ++  A +      VL+  G G 
Sbjct: 390 IHNAKLIEEDDTSVLKAHDKA----VLIFMGAGD 419


>gi|157692194|ref|YP_001486656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pumilus SAFR-032]
 gi|167017287|sp|A8FCX9|MURD_BACP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157680952|gb|ABV62096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           SAFR-032]
          Length = 451

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 148/412 (35%), Gaps = 54/412 (13%)

Query: 65  AQGAEAIVVSSAYSL-QDFSATIRSNTPILVVDNT--RKFLS---------LFASRLYGK 112
            +G + +  S    + +D   TI    P +  +N   ++ L            A  L   
Sbjct: 54  EKGIDVVCGSHPLRIFEDKDITILIKNPGIPYENVMVQEALRRQIPVWTEIELAYHLT-- 111

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                + +TG++GK++  + + ++ ++    +   G   T++S                 
Sbjct: 112 -SSPFIGITGSNGKTTTTTLIYEMLKKDSQKTLVAGNIGTVASEV--------------- 155

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                ++ G   +  E SS  L        +       N+   H+DYH T++ Y  AK +
Sbjct: 156 ---AANADGDEWIVTELSSFQLM--GTVEFRPKISLILNIFDAHLDYHHTREEYEKAKQK 210

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +F     ++  A+I  DD    ++ + +        SV    +     +  AI+   +  
Sbjct: 211 VFVHQ-HEDDIAVINLDDPSVVKLAEGSKAKKV-FFSVKEPVEHGAFIQHGAIYYMNEHI 268

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I V+         LPGE    N L A  +    G  +  ++  L     V  R +FV T 
Sbjct: 269 IDVKD------VVLPGEHNQENILAAICVVKNAGCSNDAIVHVLTTFGGVKHRLQFVDT- 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +  + Y D   T+     IL   + +++     +   GG     +   +      +  +
Sbjct: 322 IQSRKFYNDSKATN-----ILATSKALSAFEQPTILLAGGLDRGNEFDELKPFMKHVKGM 376

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  P+     K+  E+  GI       N  +A+  A  +  ++DV+++
Sbjct: 377 ITFGETAPKF---VKLGEEL--GIHHVKHVDNVEQAVPAAFNISEEEDVILL 423


>gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5]
          Length = 792

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 131/396 (33%), Gaps = 56/396 (14%)

Query: 24  QWRERKINEVSSDSRHI--QAGW--IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
              + ++  V +DSR +  + G   +FVA+ G   D H FI    ++G  A +V      
Sbjct: 17  SGCDSEVRSVVTDSRSLSCELGCRPMFVAMRGANHDSHDFIADMQSRGVRAFLVERGVE- 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +++       + VDN  + L   A+    +    ++ +TG++GK+ +  ++ +    
Sbjct: 76  ---ASSCTGECGFVQVDNAIEALQRLAAYHRAQFRGTVVGITGSNGKTVIKEWIAEELPE 132

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                   G     S  + +++L  P  + + +    L+           S  G  +   
Sbjct: 133 --------GMKYYRSPKSYNSQLGVPLSVLMLEGDEELAIFEA-----GISKPGEMERLE 179

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             I+  A  FT++G  H +     +   + KM                        ++ R
Sbjct: 180 RIIRPDAVIFTSIGDAHQENFINLEQKCDEKM------------------------ILAR 215

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + +         Y   +  L ++ A H   +  +            +       NA +  
Sbjct: 216 SASKII------YHSYYEPLGRMVAAHFADRRPVDAASYPEVPESVIGNAASRRNAQIVE 269

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             C A+   +            V  R E     +    I   Y    NSL + L  + ++
Sbjct: 270 AFCDAMRYPAPSFAGA----PSVAMRLEVKEGINDSILINDAYNLDLNSLALALDYLHSV 325

Query: 380 T-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             S R  +V             + G++A  +A   I
Sbjct: 326 ALSRRRTLVLSDISQSGLSDDELYGRVAGMVARAGI 361


>gi|62900655|sp|Q5E2P8|MURD_VIBF1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 440

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 152/403 (37%), Gaps = 68/403 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L         +  I +V +      LFA  +       ++A+TG++GKS
Sbjct: 69  ADLIVTNPGIALASPQLKPAIDKGIKIVGDIE----LFAWAVN----APVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V     ++ + +G+ +   G                        AL  L  Q      +
Sbjct: 121 TVTDLTGEMAKAAGVKTAVGGNIG-------------------FAALDLL-EQDAELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+FE         I+ 
Sbjct: 161 ELSSFQLE--TTSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEH----AEVCIVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD       +   +    + S G+        +   I    + T+ +   +      L 
Sbjct: 215 RDDK------QTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKNTVPLLAAN---ELGLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N+LVA  L  A GI+    L+ L   + +  R + V  N  G R   D   T+ 
Sbjct: 266 GKHNIANSLVAIALLDAAGINLDATLDTLRTYNGLTHRCQVVADN-NGIRWVNDSKATNV 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT------DDNPR 421
           +  +   +   +     ++V G G   D        +++  L D+ ++        D   
Sbjct: 325 ASTLAALSGLQLEGKLHLLVGGVGKGADFS------ELSPALHDLNLMMYCFGEDGDQFV 378

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           S DP  +  E ++            EAI T    LNK D++++
Sbjct: 379 SLDPRSLLCETMN------------EAIATLYPTLNKGDMVML 409


>gi|311898890|dbj|BAJ31298.1| putative UDP-N-acetylmuramate--L-alanine ligase [Kitasatospora
           setae KM-6054]
          Length = 468

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 146/443 (32%), Gaps = 78/443 (17%)

Query: 59  FIPQAIA---QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           F+  A      G  ++VVSSA    +          + VV  +    +L   R       
Sbjct: 57  FVGHAAEHLPAGTSSVVVSSAIRADNPELVAARERGVPVVHRSDALAALMGGR------- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQD-------------- 159
             LAV GT GK++  S +       G   S    G      S A                
Sbjct: 110 RALAVAGTHGKTTTTSMLAVSLGELGLEPSYAIGGDLDAPGSNAHHGAGEIFVAEADESD 169

Query: 160 --NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                  P                                             N+  DH 
Sbjct: 170 RSFHKYAPE---------------------------------------VAIVLNVELDHH 190

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVG-YQGK 275
             + + +    +    F   +      ++ AD   ++E+ +R A  AG  V++VG  +  
Sbjct: 191 ANYASIEEIHQS-FETFVGRIQPGGTLVVSADHEGARELTRRVAGRAGLNVVTVGAAEDA 249

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            + +  V A     +VT+ + G+   F   +PG    +NA+ A    +A+G+ +  + + 
Sbjct: 250 DVRVLAVAAHGMTSEVTVELGGERLVFTVSVPGRHYAHNAVAALAAGVALGVPAEGLAKA 309

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDR 394
           L     V  R +  G  +RG ++   YAH    +   L+ IR     GR++VVF      
Sbjct: 310 LGAYTGVRRRLQLKG-EARGTQVIDSYAHHPTEMAADLEAIREAAGAGRVLVVFQPHLFS 368

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEA 448
              +      +AL LAD ++V D  P  EDP      E I             + +   A
Sbjct: 369 RTQQLAEEMGLALALADASVVLDIYPAREDPIPGVTAELIIDAARRAGADVRAEHDFAAA 428

Query: 449 IRTAIEMLNKQDVLVVAGKGHET 471
                 +    D+++  G G  T
Sbjct: 429 PAVLAALAAPGDLVLTMGAGDVT 451


>gi|27904698|ref|NP_777824.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29427599|sp|P59418|MURC_BUCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27904095|gb|AAO26929.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 486

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 132/432 (30%), Gaps = 53/432 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+SSA S  +          I V+        +   +         +A++GT GK+S 
Sbjct: 81  VIVISSAISCNNPEIIKAKKLNIPVISRAEMIAEIIRYKYN-------IAISGTHGKTST 133

Query: 130 ASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            + +  I + S LS   I  G   +I+S  +  +                      +  V
Sbjct: 134 TAIIFSIFEDSNLSPTLINGGYLKSINSNIKIGKNPF-------------------YCIV 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA            +K I    TN+ +DHI+ +             F   LP    AI+ 
Sbjct: 175 EADESDAS---FLHLKPITIILTNIEKDHIETYNGSFHNLKLAFIKFIHNLPFYGTAIMC 231

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+   + ++                      + V      + + I V     +    LP
Sbjct: 232 IDNHAVQTILPYIKR-NIITYGFSSNADVRIDRYVQKKFTSRFIVIRVNKPTLNVTLNLP 290

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIY 359
           G     NA  A  +     ID   +++ L+    V  RFE   T          +   + 
Sbjct: 291 GRHNALNATAAICVATQENIDDKNIIQSLKNFQGVQRRFELSKTFTINSKSHRKKEIMLI 350

Query: 360 VDYAHTSNS-LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DY H     LE I          +++++F                  L   D   + + 
Sbjct: 351 NDYGHHPTEILESIHTARFGWPKKKLLMIFQPHRYTRTKNFLFSFSKTLSNVDELFILEV 410

Query: 419 NPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
              +E      D   +   I      F+    +  +     +  L+  ++++V G G+  
Sbjct: 411 YAANEAIIPGADSTSLYKTIKKNKKNFVTLILDLNKLFLNIMSKLSDSNLILVQGAGN-- 468

Query: 472 VHIVTNGEKKMS 483
              V N  K   
Sbjct: 469 ---VDNIVKTFF 477


>gi|239617755|ref|YP_002941077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506586|gb|ACR80073.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 449

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 131/349 (37%), Gaps = 46/349 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT+GKS+V + V  I ++SGL +F  G   T    + + R               
Sbjct: 110 IVGITGTNGKSTVTTMVGHIAKKSGLKTFIGGNLGTPLISSINERF-------------- 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VE SS  L             S  N+ +DH+DYH+  + Y  AK+++ E 
Sbjct: 156 ------DVYVVEVSSFQLTWFGKKEKYFHLSSILNIAQDHLDYHRDMREYALAKLKIIE- 208

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L    S       + +   ++ +         +   +  F  LK      +K  +++   
Sbjct: 209 LTSGSSIINSEILENFGDLLVDKTKKQIIPFST--RKDSFFCLKDGIMRLHKLSISLDS- 265

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRG 355
                     PG     NA +  GL   +GI    V + LEKL                 
Sbjct: 266 -------LNFPGIHNQENAAITLGLAQFLGI---HVHDALEKLQDYAFLDHRMQKCGQIN 315

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G  +++ +  +N+   ++  +      ++I++   G ++ +   P++ KI        I 
Sbjct: 316 GVTFINDSKATNA-HAVINALENFDLEKVIIILS-GKEKREDYTPLIKKI--SRVKHIIF 371

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLV 463
             D+ +S     I      GI    +   +  EA++ A+E+    D+++
Sbjct: 372 LGDSLKS----LIERLKKKGITYDVVHTID--EALKKAVELSKAGDIVL 414


>gi|289578675|ref|YP_003477302.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
 gi|289528388|gb|ADD02740.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
          Length = 454

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 116/321 (36%), Gaps = 26/321 (8%)

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           S +    ++          +   L Y   +      + A         +   K       
Sbjct: 124 SLLGEMFKNTGRKVYVAGNIGYPLIYAVMEAAEDDFIVAEISSFQLETIKEFKPKISCII 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H+T + Y + K R+FE    ++   ++  DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLDRHKTFENYRDIKGRIFENQ-REDEYTVLNYDDPVTWNLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIG 326
             +     L +  A      + ISV G     +      +PGE  + NAL A+ +    G
Sbjct: 240 SRKS----LLENGAYVKDGSIYISVYGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ +     IV
Sbjct: 296 ISADVIANTLKTFKGVEHRIEFVD-EINGVKFYNDSKGTNP--DASIKAIQAL--KTPIV 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443
           +   G D+       +      +  + ++       +  +KI+             +  G
Sbjct: 351 LIAGGYDKGSEFDEFVKAFNGKVKKLILI------GQTAKKIKDTARKYSYPEDDILFAG 404

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
              EA++ A E   + D +++
Sbjct: 405 TLEEAVKKAYESAKEGDSVLL 425


>gi|150026094|ref|YP_001296920.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacterium
           psychrophilum JIP02/86]
 gi|189028989|sp|A6H194|MURC_FLAPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149772635|emb|CAL44118.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 448

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 123/374 (32%), Gaps = 54/374 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ +S +  I   SG        T+ I    ++               S L
Sbjct: 114 LAVAGTHGKTTTSSILGHILYESGAD-----VTAFIGGIVENYN-------------SNL 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G T   VEA         L          T++  DH+D +    A   +     +++
Sbjct: 156 IGSGKTVTVVEADEFDRSFLHLY---PNIACVTSMDADHLDIYGDDAAIKASFKEFADKV 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVE 296
             K    +I                   + ++VG       +     I N      +   
Sbjct: 213 EDKNKLFVING--------------LPLKGITVGANDDSQFVAHNIRIENGWYIFDVKTP 258

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++  D  F LPG+  + NAL+A  +    G  +  + + L     V  RF F     + 
Sbjct: 259 TENIKDLKFGLPGKHNLTNALLALAMARTFGTPTESIAKALASFKGVKRRFSFQIRKPKF 318

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    +  + + +R +     ++ VF                 +L   D  +
Sbjct: 319 VYI-DDYAHHPTEINAVHQAVRELYPNEKVLAVFQPHLFSRTKDFANDFAKSLSQFDEIL 377

Query: 415 VTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAG 466
           + D  P  E P +      +  ++ +     + K          I +L K D  V+V  G
Sbjct: 378 LLDIYPARELPIEGINSGWLLDKVENKNKKLVHKN-------ELIPLLKKSDATVIVTIG 430

Query: 467 KGHETVHIVTNGEK 480
            G     +V   ++
Sbjct: 431 AGDIGEMVVNIKKE 444


>gi|323496076|ref|ZP_08101136.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sinaloensis DSM 21326]
 gi|323318820|gb|EGA71771.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sinaloensis DSM 21326]
          Length = 455

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 121/363 (33%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    +A   +V++R           G Q ++   K      +  Q  
Sbjct: 207 LV-RTVPGNGRILAPKHEAAISDVLER--GCWSETEFSGEQSEWQAEK---LSADGSQFK 260

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + K    + + L G+  V NAL+A      +G+   L  + L K      R E  G 
Sbjct: 261 VYFQAKAVGVVNWDLVGDHNVNNALMAIAAARHVGVTPDLACDSLAKFISTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R       I+            G        +LD 
Sbjct: 320 EVHGVTVYDDFAHHPTAIELTLDGLRNKVGQNRILAVLEPRSATMKRGVHKETLAASLDA 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRI-EAIRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     E+ H         ++I E +   I+     D ++V 
Sbjct: 380 ADAVFLYQ-------PDAIDWSVEEVAHQCRQPAYSSSQIDELVSMIIDQAKPGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|238022772|ref|ZP_04603198.1| hypothetical protein GCWU000324_02683 [Kingella oralis ATCC 51147]
 gi|237865975|gb|EEP67111.1| hypothetical protein GCWU000324_02683 [Kingella oralis ATCC 51147]
          Length = 452

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 119/381 (31%), Gaps = 44/381 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +H   +LAV GT GK++ AS +  + + +G+ +  +       +F    RL
Sbjct: 95  QWLAENVLHQH--WVLAVAGTHGKTTTASMLAWVLEYAGMGAGFL-IGGVPQNFNVSARL 151

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 +            V       ++    + +    +       NL  DH D    
Sbjct: 152 PQNESPFF-----------VIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPN 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +  A     K V+ +       V   G    +    ++
Sbjct: 201 LAAI-ETQFHHLVRTIPGEGLIVANARSGSLKTVLDQ--GCWTPVAPFGDNAHW----QI 253

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             +       +  +G+      + L G     NAL        +G+      + L +   
Sbjct: 254 ANVQPDGAFDVQYQGETVGHIAWDLLGNHNRLNALAVIAAAQHVGVRVEHSCQALSQFKN 313

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  G  + G  +Y D+AH   ++E  L  +R       I+              +
Sbjct: 314 VKRRMEIKGI-ANGITVYDDFAHHPTAIETTLAGLRQKVGSARIIAVLEPRSNTMKLGTM 372

Query: 402 MGKIA--LDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              +A  L  AD        V  D   +  P   +A I      F+   NRI A      
Sbjct: 373 SAALAGSLKDADQVFCYAGGVDWDVASALAPLGSKAHIGKQFDDFV---NRIAA------ 423

Query: 455 MLNKQDVLVVAGKG-----HE 470
                D +++   G     HE
Sbjct: 424 AAQAGDHILIMSNGGFGGIHE 444


>gi|254488363|ref|ZP_05101568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
 gi|214045232|gb|EEB85870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
          Length = 464

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 113/324 (34%), Gaps = 34/324 (10%)

Query: 68  AEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTG 122
           A  IV   +   Y   +       +  + V ++   F   FA++ +        I+AVTG
Sbjct: 68  ARLIVSPGIPHLYPAPNPVIVAAQDAGVAVDNDIGLFFQSFATQDWDGFDQMPKIIAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ ++ +  I + +G  +   G                         L    +   
Sbjct: 128 SNGKSTTSALIHHILKHAGRPTQLAGNIG-------------------RGVLDIEPAIDG 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 169 EVVVLELSSYQTDLAR--NLTPDIAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRA 226

Query: 243 PAIIYADDAYSKEVMKRAHN--AGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVE 296
              +  D+A  + +  +     A  RV+ V       G    +       ++ +    V 
Sbjct: 227 IIGV--DEAEGRYLAGQLSEGAADDRVIRVSVDRKLSGPGWQVFARKGFLSEYRKGKQVG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D   +  LPG     NA  A   C ++G    ++         +P R + +G      
Sbjct: 285 SIDLRGVTGLPGAHNHQNACAAYAACRSLGFAPKVIEAAFASFGGLPHRSQTIGELRGIR 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT 380
            +    A   +S    L   R I 
Sbjct: 345 FVNDSKATNVDSAVKALAAFRNIR 368


>gi|319638325|ref|ZP_07993088.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa C102]
 gi|317400598|gb|EFV81256.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa C102]
          Length = 458

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 119/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHQH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        +E + +       V   G +  +    +V
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQETLDK--GCWTPVEKFGTEQGW----RV 260

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             +H      +   G+      + L GE    NAL         G+D     E L     
Sbjct: 261 GTVHADGSFDVCHHGETVGHVAWELMGEHNRMNALAVIAAARHAGVDIQTACEALSAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 321 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                 +L  AD            D     AE +  + G +  G    A +   ++    
Sbjct: 380 KAALPASLKGADQVFC---YAGGVDWN--VAEALAPLGGKLHVGKDFNAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|212715559|ref|ZP_03323687.1| hypothetical protein BIFCAT_00457 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660926|gb|EEB21501.1| hypothetical protein BIFCAT_00457 [Bifidobacterium catenulatum DSM
           16992]
          Length = 521

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 127/430 (29%), Gaps = 65/430 (15%)

Query: 82  FSATIRSNTPILVVDNTRK--------FLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           FS+ I+ + P +V  +            LSL        + +  + V G  GK++ +S +
Sbjct: 94  FSSAIKPDNPEIVAAHAAGERIVHRSDILSLLM------NTKRAVTVAGAHGKTTTSSML 147

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I   +G             + A  +     S       +      G     V  +   
Sbjct: 148 AHILTHAGE-----------GNLADPSYAIGGSIQGKDGVMLDGGHAG--QGDVLVAEAD 194

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                           TN   DH+D++ TQ+ Y  A     + +       ++  DD  +
Sbjct: 195 ESDGSFAKYHPEIAIVTNSEADHLDHYGTQENYRAA---FVDHVQHAVKSVVMCGDDEGN 251

Query: 254 KEVMKRA---HNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----------QVTISVE---- 296
             V++       A   V +   +     L     +H +             T+ V     
Sbjct: 252 LAVLRALDASAAAHTVVYATQDEASLGDLNGAAFVHIESESESAQSGAEHFTLHVPAGLL 311

Query: 297 ---GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +       +PG     NA  A      +G+D     E          RF+  GT S
Sbjct: 312 DGQERMVPVTLTVPGIHNARNASAAIIAAALLGVDIEKAAEVTTSFLGAARRFQVRGTVS 371

Query: 354 RGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +   +  DYAH    +  +L    R      I V+F                 AL  AD 
Sbjct: 372 Q-VTVVDDYAHHPTEISALLDAARRKYPQSAIRVIFQPHLFSRTKFFAEAFAEALAKADD 430

Query: 413 AIVTDDNPRSED--------PEKIRAEIIHGIPGFIE-----KGNRIEAIRTAIEMLNKQ 459
            IVT   P  E         P+ I  E +       E       +   A +  +   +  
Sbjct: 431 VIVTGIFPAREKQEDYPTVGPDTIVDEALKLDHTPAEDWIRGVEDMHTAAQMMVMRAHHG 490

Query: 460 DVLVVAGKGH 469
           DV+   G G 
Sbjct: 491 DVIFTVGAGD 500


>gi|163752976|ref|ZP_02160100.1| UDP-N-acetylmuramate--L-alanine ligase [Kordia algicida OT-1]
 gi|161326708|gb|EDP98033.1| UDP-N-acetylmuramate--L-alanine ligase [Kordia algicida OT-1]
          Length = 450

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 125/363 (34%), Gaps = 54/363 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V GT GK++ +S +  +   SG     I  T+ +   A++               S L
Sbjct: 115 LGVAGTHGKTTTSSILGHLLAESG-----INVTAFLGGIAENYN-------------SNL 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G     VEA     D+  L  +       T++  DH+D +  ++A  ++ +  F + 
Sbjct: 157 ILKGNEITVVEADEF--DRSFLQ-LSPDIACITSVDADHLDIYGEKEALQDSFIE-FTKC 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +       +  D                  ++ G+Q     H+K +   H      I   
Sbjct: 213 IKPNGKLFVQED-------------IQLDGITYGFQETSDYHIKNIRIKHGAYVFEIVTP 259

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            K   D  F +PG   + N LVA  +   IG  +  + + L     V  RF +    +  
Sbjct: 260 SKIIEDVQFYIPGRHNLLNGLVAFAMADIIGTPTDRLAKALGTFAGVKRRFSYQIKKTD- 318

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH    +  + + +R +    ++  +F                 +L   D  I
Sbjct: 319 FVFIDDYAHHPTEINALHQAVREMYPEKKVTAIFQPHLFSRTRDFADEFAESLAQFDEII 378

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRT--AIEMLN--KQDVLVVAG 466
           + +  P  E P       I G+         K ++ + I     +  +   + D+L+  G
Sbjct: 379 LLEIYPAREKP-------IEGVTSSWLLNKIKNDQKQLIAKENLVNHVTTVQTDILLTVG 431

Query: 467 KGH 469
            G 
Sbjct: 432 AGD 434


>gi|332305223|ref|YP_004433074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172552|gb|AEE21806.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 441

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 145/399 (36%), Gaps = 58/399 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS   SLQ  +        + VV +   F       ++   P  +LAVTG++GKS
Sbjct: 64  ADMLVVSPGLSLQTAAIQEAIEAGVQVVGDIELF------AMFNNTP--VLAVTGSNGKS 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +VA+   ++C   G  +   G   T +                      L  +    + +
Sbjct: 116 TVATLAYEMCIAGGKKALLGGNIGTPA--------------------LELLEKDADIIVL 155

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +     NL  DH+D H    +Y  AK+R++++       ++  
Sbjct: 156 ELSSFQLESTHT--LRPLVACMLNLSDDHLDRHGDMLSYQRAKLRIYKD----ARFSVCN 209

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFP 305
            DDA +  +           +  G       L       +K    + ++GK +       
Sbjct: 210 RDDAATWPM------TINPDVMFGLSSSERGL-----SWDKDTAQLLLDGKAYLDSQACM 258

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GE  + N   A  + +  GI+   +         +  R + V  +S    I    A  
Sbjct: 259 LVGEHNMLNIQAATAMTMLAGIELEAIKSAAMNFAGLAHRCQTVAMSSNVRWINDSKATN 318

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +    +  +     G++I++   G  +     P+  +    ++++  +  D P     
Sbjct: 319 VGATIAAIDGLAPTCKGKLILI-AGGDGKGADFSPLEERFNHQVSELITLGKDGP----- 372

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E+    P   +  N  +A++ A  + +K   +++
Sbjct: 373 -----ELAKLKPSSHQVVNLEDAVQLAASLASKDSTVLL 406


>gi|297583948|ref|YP_003699728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
 gi|297142405|gb|ADH99162.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
          Length = 455

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 143/414 (34%), Gaps = 61/414 (14%)

Query: 67  GAEAI-------VVSSAYSLQDFSATIRSNTPILV--------VDNTRKFLSLFASRLYG 111
           GAE +       +V     L   +  I  + P++         V    +     A+    
Sbjct: 55  GAEVVCGSHPETLVHEGLDLLVKNPGIPYDHPLIKKALHMRIPVITEVEIAGEIAAC--- 111

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +++ +TG++GK++  +    + + S  +    G    ++S   D  L       L 
Sbjct: 112 ----DMIGITGSNGKTTTTTMTASMLENSPKNPKAAGNIGEVASKVADASLP---EDILV 164

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             LS    QG                  +  K     F NL   H+DYH T   Y  AK 
Sbjct: 165 VELSSFQLQG-----------------TNRFKPHIAVFLNLIEAHLDYHGTMDDYAQAKA 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R+F     K+   I  ADD     + ++A +      +         +    +      +
Sbjct: 208 RIFRNQ-SKDDVLIYNADDPLVSSLAEQADSTCIPFST-------QRIVDGGSYIKDGDI 259

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E       F LPG++ + N L AA   +  G D   V   L     V  R ++V T
Sbjct: 260 VVLGEVLMRRDDFSLPGDYNLSNGLAAATAAMKAGADPEQVRHVLASFEGVKHRLQYVDT 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G R + +   T+      +K +     G  I++   G DR      +   +   +  
Sbjct: 320 -VNGVRYFNNSKATNVP--ATVKALEAF-PGERIILIAGGLDRKLSFDDLYAPMGQSVKG 375

Query: 412 IAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +          E  +K+  A    G+   ++     EA+R A E+  + D++++
Sbjct: 376 LVTY------GETADKLAEAGRSAGVETILKTTTLEEAVRKAEEISEESDIILL 423


>gi|254430906|ref|ZP_05044609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
           7001]
 gi|197625359|gb|EDY37918.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
           7001]
          Length = 473

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 129/386 (33%), Gaps = 42/386 (10%)

Query: 82  FSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  I  + P L    +R  +             P   + +TGT+GK++V   V  + + 
Sbjct: 84  ISPGIPWDLPALTALRSRGVRVQGEMVPAWEASRPVPWIGITGTNGKTTVTHLVHHLLEA 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           SGL +   G                 S   L        ++  T + VE SS+ ++    
Sbjct: 144 SGLDAPMAGNVG-------------YSAAELVLDRRGSGAELPTWMVVELSSYQIEAA-- 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G +T L  DH++ H T +AY   K      LL +    ++  DD   +     
Sbjct: 189 PEVAPRVGIWTTLTPDHLERHGTLEAYRAIK----RSLLERSQVQVLNGDDPDLQRHAAS 244

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNA 315
              A    ++ G + +     +        +V     G   D +      +PGE    N 
Sbjct: 245 WPGACW--VTAGPRQELPEAIRPHLWVEAGRVIRDHNGTSQDLMAADCLAMPGEHNRQNM 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           ++A    +  G+    +         VP R E +  + + G  Y + +  +N  +     
Sbjct: 303 MLAIAAGLEAGLTGQQMECAFRSFPGVPHRLERI--DQQAGVSYYNDSKATN-YDAAEVA 359

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R +     +VV   G  +    R  +  +      + +           +     ++ G
Sbjct: 360 VRALAGP--LVVLAGGQAKRGEARGWLEALHQKARAVVLFGA-------AQAEFQALLEG 410

Query: 436 --IPGFIEKGN-RIEAIRTAIEMLNK 458
               G I + +   EA+  A  +  +
Sbjct: 411 ASFAGAIHRCDGLNEAVPLARALAAE 436


>gi|229916435|ref|YP_002885081.1| UDP-N-acetylmuramate--L-alanine ligase [Exiguobacterium sp. AT1b]
 gi|259509772|sp|C4L4P1|MURC_EXISA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229467864|gb|ACQ69636.1| UDP-N-acetylmuramate/alanine ligase [Exiguobacterium sp. AT1b]
          Length = 435

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 130/416 (31%), Gaps = 67/416 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVV       D    +R+    L +    +FL   A+          +A+TG+ GK+S  
Sbjct: 63  IVVQGNAFSDDHPEIVRARELGLTIYKYYEFLGELANHY------TSVAITGSHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +SF IG  +       D++          +   Y              
Sbjct: 117 GLLAHVMRGIEPTSFLIGDGT--GEGVADSKNFVFEACEYKRHFLYY------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +      TN+  DH DY        +A   + +++   +   I   DD
Sbjct: 162 ------------RPDYAIMTNIDFDHSDYFSGLDDVIDAFQEMAKQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              +++     N        G    F   ++V +  N     + +    +  F  P  G+
Sbjct: 207 ENLQQIQA---NVPLVYYGFGAHNDF-RAEQVTSTENGTTFDVFLRDDFYGTFRIPGYGD 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL     C    +   LV E LE  + V  RF     N +   +  DYAH    +
Sbjct: 263 HSVLNALAVIATCDYENLPKELVKERLETFNGVKRRFSESTLNDQ--VLVDDYAHHPREI 320

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              ++  R    +  ++ +F                 AL  AD   + D    + + E  
Sbjct: 321 SATVEAARKKYGNREVVAIFQPHTYTRLKSFMDDFATALAEADTVYLCDIFGSAREQE-- 378

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---------DVLVV-AGKGH-ETVH 473
                    G +   +    I  A  +L +          D +++  G G  +T  
Sbjct: 379 ---------GTVTIEDLQSRIEGA-HILKRGGTGVLRNHADAVLLFMGAGDIQTYQ 424


>gi|223043543|ref|ZP_03613588.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus capitis SK14]
 gi|314933892|ref|ZP_07841257.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus caprae C87]
 gi|222443031|gb|EEE49131.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus capitis SK14]
 gi|313654042|gb|EFS17799.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus caprae C87]
          Length = 437

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 127/365 (34%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +            S  +  +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG--------LPGSDYFAFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H            TN+  DH DY +  +  ++A    F+++
Sbjct: 155 ------------RRHFLSYH------PDYAIMTNIDFDHPDYFKNIEDVYDA----FQDM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                 AII + DD Y +++      A   +   G+ +   I+ K +       Q  +  
Sbjct: 193 AHNVKKAIIAWGDDDYLRKL-----EADVPIYYYGFKETDDIYAKNIQITEKGTQFDVYT 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+ +D FL P  G+  + NAL    +     ++   + + L     V  RF     +++
Sbjct: 248 NGEFYDQFLSPQFGDHNILNALSVIAISYLEKMNVDNIKDALVTFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++   +      ++ VF                 +L  AD  
Sbjct: 308 --VLVDDYAHHPREISATIESARKKYPQKEVVAVFQPHTFSRTQAFLDEFASSLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQD--VLVV 464
            +           +I   I     G +   + IE I         +I++L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGELTIQDLIERIDGSSLIDENSIDILKEFDNAVILF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|332686694|ref|YP_004456468.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC
           35311]
 gi|332370703|dbj|BAK21659.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC
           35311]
          Length = 446

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 114/361 (31%), Gaps = 50/361 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AVTG  GK+     +  +      +S+ IG  +   +                 
Sbjct: 105 QSYTSIAVTGAHGKTGTTGLLAHVLSGVKPTSYLIGDGTGHGN----------------- 147

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                        + EA  +   +H L          TN+  DH DY+ + +  ++A   
Sbjct: 148 -------PDAEFFAFEACEYQ--RHFLSY-SPDYAIMTNIDFDHPDYYTSIEDVYSAFQS 197

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
           L  ++   +     Y DD Y +++     NA   +   G  +   I  K +         
Sbjct: 198 LANQV---KKGIFAYGDDKYLRKL-----NADVPIYYYGVNENDDIQAKNIQRTTKGSSF 249

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  EGK    F  P  G+  + NAL          +D   V   ++    V  RF    
Sbjct: 250 DVYYEGKFIGHFDLPAYGQHNILNALGVIAAAYFEELDMDEVAIEMKTFKGVKRRFTEKQ 309

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  I  DYAH    +   +    +   +  I+ VF                 ALDL
Sbjct: 310 IGDM--IIIDDYAHHPTEISATIDGARQKYPNKEIVAVFQPHTFTRTIALLDEFGKALDL 367

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRT---AIEMLNKQD 460
           AD   + D    + +       E +  +I  G    I++ +  E +      I  +   D
Sbjct: 368 ADYVYLCDIFGSARETQGNVKIEDLGNKIKKG-GQVIKEEDMSELLDYTDSVIMFMGAGD 426

Query: 461 V 461
           V
Sbjct: 427 V 427


>gi|296101251|ref|YP_003611397.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055710|gb|ADF60448.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 438

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 149/402 (37%), Gaps = 58/402 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ IV S   +L   S +  ++  + +V +   F          +    ++A+TG++G
Sbjct: 64  QAADLIVASPGMALAHPSLSAAADAGVEIVGDIELF--------CREAQAPVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + V ++ + +G +    G     +                      L  +G    
Sbjct: 116 KSTVTTLVGEMAKAAGKNVGVGGNIGLPALM--------------------LLDKGCELY 155

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            +E SS  L+      +   A +  N+  DH+D +    Q Y  AK+R++E         
Sbjct: 156 VLELSSFQLE--TTSSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVC 209

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
           ++ ADDA +  V      A  R +S G      HL +           + V+G+    + 
Sbjct: 210 VVNADDALTMPV----RGADDRCISFGITMGDYHLNRQLGETW-----LRVKGEKVLNVK 260

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+    NAL A  L  A+G+  +  L+ L     +  RF+    ++    I    
Sbjct: 261 EMKLSGQHNYTNALAALALADAVGLPRSSSLQALTTFTGLAHRFQLALEHNGVRWINDSK 320

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    S E  L  ++    G + ++   G  +      +   ++ D   +     D    
Sbjct: 321 ATNVGSTEAALNGLQ--VEGTLHLLL-GGDGKSADFTSLKQYLSGDNIRLYCFGRD---G 374

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  ++R EI        +     +A+R     +   D++++
Sbjct: 375 RELAELRPEIAE------QTETMEQAMRLIAPRVKPGDMVLL 410


>gi|226356422|ref|YP_002786162.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus deserti VCD115]
 gi|226318412|gb|ACO46408.1| putative UDP-N-acetylmuramate--L-alanine ligase (UDP-N-
           acetylmuramoyl-L-alanine synthetase) [Deinococcus
           deserti VCD115]
          Length = 476

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 134/445 (30%), Gaps = 58/445 (13%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           +R ++   I VA+      GH     A     + +V S A               + V  
Sbjct: 65  TRQLEREGISVAL------GHD---AAHMADVDVLVASEAVPKSHPELVAAREAGVQV-- 113

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
             R  + L    L        + V GT GK++  S +    Q +GL              
Sbjct: 114 --RPRMGLLDELLRAGPS---VGVIGTHGKTTTTSMIAVALQGAGLDPSAFVGGIVPEFA 168

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
           +     + P    + ++    +  G                           FTN   DH
Sbjct: 169 SNARIGSGPFVAEVDESDRAFAELGCE----------------------TAVFTNAEDDH 206

Query: 217 IDYHQTQQAYFNAKMRL---FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY- 272
           +     Q  Y+         F   + +    +  AD    + + + A       L+ G  
Sbjct: 207 VG--GNQATYWETVEEQHAGFARFVSQSDRVLFCADWPGLETLCEGAAER----LTYGQA 260

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +G       +         T+   G++       LPG   V NAL A  +    G +   
Sbjct: 261 EGADYRAVNLHPDAEGTSFTVHWRGEELGQARVGLPGVHNVLNALAALAVAHLYGGNFTQ 320

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
               L        R++ +G    G  I  DYAH +             T  R+ VVF   
Sbjct: 321 AAGALASFGGPGRRWQRIG-ELNGALIIDDYAHNATK-VAAAVQAARQTGRRVRVVFQPH 378

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII------HGIPGFIEKGN 444
                 +       AL  AD  ++ D    SE P E I A +I       G  G     +
Sbjct: 379 RYLRTQQSWPRLADALMDADEVLLLDIAAASEAPIEGIHATLISTRMTEQGHTGVHYLPD 438

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGH 469
           R + ++   +     D++V  G G 
Sbjct: 439 RADVLQLLRDTAAPGDIIVTMGAGD 463


>gi|146291932|ref|YP_001182356.1| UDP-N-acetylmuramate [Shewanella putrefaciens CN-32]
 gi|145563622|gb|ABP74557.1| UDP-N-acetylmuramate [Shewanella putrefaciens CN-32]
          Length = 464

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 110/358 (30%), Gaps = 22/358 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +     +      +     S  ++ +
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFL--IGGVPQNFGVSACLGESAFFVVE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 162 ADEYDSAFFDKRSKFVHYH------------PRTLVINNLEFDHADIFADLAAIQKQFNH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P E   I   D    K+ +     +              + K +    +  +V 
Sbjct: 210 LI-RTVPGEGKIIWPVDVQAVKQTIDMGCWSEQEHYHTAESITGWYGKALSDDCHCFEVF 268

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E +     + L G+  + NA++A      +G+  +  +E L +      R E +GT 
Sbjct: 269 FDGESQ-GVLEWDLIGQHNIENAIMAIVAARHVGVKPSAAIEALAQFIPPKRRLELLGT- 326

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--A 410
             G  +Y D+AH   ++   LK +R       I+V                 +A  +  A
Sbjct: 327 VNGISVYDDFAHHPTAIATTLKGMRAKVGQSKIIVVLEPRSNTMKSGVHKDTLAYSMMQA 386

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D A +            ++  +   +   +      E +          D +VV   G
Sbjct: 387 DEAFL---YQADTIDWNMKEAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVVMSNG 441


>gi|317132325|ref|YP_004091639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470304|gb|ADU26908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
          Length = 458

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 130/414 (31%), Gaps = 54/414 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILA 119
            GA   +  +     DF        IR   P L     R   ++      +   P  I+A
Sbjct: 57  AGAALQLGETYLKSLDFDVIFRTPGIRYTLPELEEARARGVAVTSEMEVFFEVCPCRIIA 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+ GK++  + + +I +R G      G                     L   +  +  
Sbjct: 117 VTGSDGKTTTTTLISEILKREGRRVHLGGNIG----------------RPLLPEIETIRE 160

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V    VE SS  L   R           TN+  +H+D H+    Y  AK  +F     
Sbjct: 161 DDVAV--VELSSFQLISMRRS---PDVAVITNITPNHLDMHKDMVEYIQAKKHIFLHQNG 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                 +  D+A +  + +           +G+  K           +     +S E K 
Sbjct: 216 CSKTV-LNFDNAITVPMAEEVRGQC-----LGFSLKEPPRFGCYTDADGVIWFLSGEQKH 269

Query: 300 FDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +        LPG   V N + AA     +      +L        V  R E V     G 
Sbjct: 270 YVMHRDDILLPGSHNVENYMAAAAAVWGL-AKPETILGVARSFTGVEHRIELV-RELDGV 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           R Y D   T+ S    L  +R  +     V+   GG        ++G  A+      I+ 
Sbjct: 328 RYYNDSIATTPS--RTLAGLRAFSQK---VILIAGGYDKHIPFDVLGPAAVQSVKCLILL 382

Query: 417 DDNPRSEDPEKIRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    +KI   +        G P  +      EA++TA       DV+++
Sbjct: 383 -----GATADKIATAVEGAEGYATGEPPILRVSGLEEAVQTARAQAASGDVVLL 431


>gi|293604151|ref|ZP_06686559.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
 gi|292817376|gb|EFF76449.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
          Length = 871

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 131/375 (34%), Gaps = 32/375 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ VTGT+GK+ VA  V ++   SG  +   G   +   +     +        A    
Sbjct: 482 PIVGVTGTNGKTVVARLVSRLLHLSGKRT---GLACSEGLYLDRRLVQKGDRADFASGTR 538

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHIDYHQTQQ-AYFNAKMRL 233
            L ++ V    +E  S  +    L   +   G  TN+   DH+      +        R 
Sbjct: 539 LLMNRNVDAAVIENDSGVILGQGLAYDRCQVGVVTNIDDADHLGDFDINETERMFNVFRT 598

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-----KKVCAIHNK 288
             +++     A++ A D     V++ A      V+  G       +     +   A+  +
Sbjct: 599 QVDVVLPTGAAVLNARDP---RVVEMAELCDGAVIFFGIDPALPAIAAHLQQDGRAVFVR 655

Query: 289 QQVTISVEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               I  +G                     FQV N L A G   A+ I   L+   +E  
Sbjct: 656 DGGIILAQGVREERLADVAAIPLTHGGRVAFQVENVLAAVGAAWALDIPVELIRAGIETF 715

Query: 340 HVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            +      ++F      G  + VD  H +++L  ++  I    + R   V+  G DR   
Sbjct: 716 DIDQADAPWQFTLFERNGSTVVVDDVHNASALRPLIAAIDQFPAARRAAVYSAGADRRDA 775

Query: 398 KRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIEKGNRIEAI 449
                G++  D  D  ++ DD       P  +    +R  +  G  +    ++ +  +AI
Sbjct: 776 DLIEQGRLLGDAFDRVVLYDDKTVQSKRPEGQARALLRQGLSQGSRVKDIQDEPDHGKAI 835

Query: 450 RTAIEMLNKQDVLVV 464
            + +  +   D +++
Sbjct: 836 ESVLNGIAADDFVLL 850


>gi|254671874|emb|CBA04108.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha275]
          Length = 458

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 118/360 (32%), Gaps = 22/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV GT GK++ AS +  + + +GL+   +     I    ++  ++   P    +
Sbjct: 103 HSRWVLAVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSVSARLPQTPRQ 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 158 DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAI-QTQFH 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   +        ++ + +       V   G +  +   +            
Sbjct: 217 HLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEANA----DGSFD 270

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++GK      + L G     NAL         G+D     E L     V  R E  GT
Sbjct: 271 VLLDGKKAGHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKNVKRRMEIKGT 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
              G  +Y D+AH   ++E  ++ +R    G  I+              +   +  +L  
Sbjct: 331 -VNGITVYDDFAHHPTAIETTIEGLRQRVGGARILAVLEPRSNTMKLGTMKSALPESLKE 389

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           AD            D     AE +  + G +  G   +A +   ++     D ++V   G
Sbjct: 390 ADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILVMSNG 444


>gi|46446885|ref|YP_008250.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|62900536|sp|Q6MBS4|MURD_PARUW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46400526|emb|CAF23975.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 444

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 162/440 (36%), Gaps = 55/440 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDF--------SATIRSNTPILV--VDNTRKFLSLFASRLY 110
           P+ +   A+ +V+ +     D         S  I SN P++    ++ ++ +        
Sbjct: 48  PEILELKAKGLVIQADCETIDLKTFDLIVVSPGIPSNHPLIKKAHEHKKEVIGEI-ELGC 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                +I+ VTGT+GK++V   +  I   +GL +  +G   T                 L
Sbjct: 107 RASCHSIIGVTGTNGKTTVTLLITHILNANGLKAKALGNVGTP----------------L 150

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + +  L  Q +    +E SS+ LD  +   +        N+  DH++ ++T + Y  +K
Sbjct: 151 TREILTLDFQEIAV--LELSSYQLDTFQQQVL--DEAVVLNITPDHLERYETMENYAKSK 206

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            ++  + L K     +       K  ++  H       + GY         +C++  +  
Sbjct: 207 FQI-GKCLKKSGKLFV-----ERKAAVEYQHLLNFPHSTYGYLPSCHTYTDLCSVFLEGM 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   +    +       + N L A  +C   GI     L+ L+       R EFV 
Sbjct: 261 QQF-----ELPLEWQGKENHDLENLLAAYAICARRGIKPQQFLQALKTFQKPSHRVEFV- 314

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G   Y D   T+  ++ +++ +++I   R + +   G D+       +      + 
Sbjct: 315 LEKNGIHFYDDSKGTN--IDAVMRAVQSI--NRPVFLIAGGVDKGASYVAWLNVFKGHVK 370

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +  +       +   KI+ E+   I   IE  N  +A++ A +   + D ++++  G  
Sbjct: 371 KVYAI------GQAANKIQKELSLHIRVQIE-ANLDDAVKQAYQDAKEGDAVLLS-PGCA 422

Query: 471 TVHIVTNGEKKMSVDCDIIR 490
           +  +  +   +      +++
Sbjct: 423 SFDMFKDYIHRGEEFKRLVK 442


>gi|289550504|ref|YP_003471408.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180036|gb|ADC87281.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 437

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 122/370 (32%), Gaps = 50/370 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     Q +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGLGIPQSDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    +      TN+  DH DY +  +  F+A    F+E+
Sbjct: 162 -------------------------RPDYAIMTNIDFDHPDYFKDVEDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
                 AII + DD + +++     N    +   G   K   +   +       +  + +
Sbjct: 193 ANNVKKAIIAWGDDEHLRKL-----NVDIPIYYYGLSDKDDVYANDIQITDKGTEFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GK +D FL P  G   + NAL    +     +D A + E LE    V  RF    T   
Sbjct: 248 NGKYYDHFLTPQYGNHNIQNALAVITISYLEDMDVANIKEALETFGGVKRRFN--ETKYD 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R    +  +I VF                 +L  AD  
Sbjct: 306 QQVLVDDYAHHPREISATIETARKKYPNKEVIAVFQPHTFSRTQAFLNEFADSLSKADHV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            + +      E+   +   ++I  + G          I    +      V++  G G   
Sbjct: 366 FLCEIFGSIRENTGDLTIQDLIKRVDGSALIDENNIDILEQFDNA----VILFMGAG--D 419

Query: 472 VHIVTNGEKK 481
           +  +    + 
Sbjct: 420 IQKIQRAYEH 429


>gi|328471997|gb|EGF42874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus 10329]
          Length = 437

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 149/405 (36%), Gaps = 72/405 (17%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V +   +L   +    +   TP  VV +      LFA  +     + ++A+TG++G
Sbjct: 69  ADLVVTNPGIALATPEIQTVLAKGTP--VVGDIE----LFAWAVN----KPVVAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL+    G     +                      L  Q     
Sbjct: 119 KSTVTDLTGVMAKAAGLTVGVGGNIGVPA--------------------LELLEQDADLY 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F+        A+
Sbjct: 159 VLELSSFQLE--TTSSLKLNAAAFLNLSEDHMDRYEGMADYRAAKLRIFDN----AELAV 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFD 301
           +  DD       +        V++ G   +   L+    +   + + Q+V  S E     
Sbjct: 213 VNRDDQ------ETYPEVEMPVVTFGSDEQAYGLEVDGSRTWLLDHGQRVIASDE----- 261

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+  + NALV   L  A G+D    L  L+    +  R + V  N RG +   D
Sbjct: 262 --LKLVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-RGVKWVND 318

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTDDN- 419
              T+ +  M   +    T    ++V G G   D    +PI   + L L    +  DD  
Sbjct: 319 SKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGLDGDDFM 378

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P  E                I      + I+     L   D++++
Sbjct: 379 PLHE--------------SAIRFNTMEDVIQQISSQLKSGDMVML 409


>gi|283835153|ref|ZP_06354894.1| UDP-N-acetylmuramate--alanine ligase [Citrobacter youngae ATCC
           29220]
 gi|291069453|gb|EFE07562.1| UDP-N-acetylmuramate--alanine ligase [Citrobacter youngae ATCC
           29220]
          Length = 491

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 143/434 (32%), Gaps = 61/434 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+     + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSDDADVRVEDYQQIGPQGHFTLV 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  D       PG     NA  A  +    GI+   +L  LE       RF+F+G   
Sbjct: 276 RQGMADLRVTLNAPGRHNALNAAAAVAVATEEGIEDEAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R       ++++F                
Sbjct: 336 LEPVNGKTGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK- 458
             L   D  ++ D     E    I       +   I    +I+ I         EML   
Sbjct: 396 NVLTQVDALLMLDVYAAGE--AAIPGADSRSLCRTIRGRGKIDPILVSDPALVAEMLAPV 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LTGNDLILVQGAGN 467


>gi|254374519|ref|ZP_04990000.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151572238|gb|EDN37892.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 561

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 133/378 (35%), Gaps = 29/378 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKV 282
             AK  +F  L  + S  II  D++Y KE   +   A   V     Q    +        
Sbjct: 283 AEAKSIVFRAL-GQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHNMKYYLAKADYA 341

Query: 283 CAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           C + +   V +    K       +         +  + NA++A  L   +GI   ++ + 
Sbjct: 342 CIVEDGNFVWVEANSKKVILPVVEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKA 401

Query: 336 LEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG 392
           L          R              +DYAH    +E +L  ++     G+  ++ G  G
Sbjct: 402 LRSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTG 461

Query: 393 DRDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKG 443
           DR      I   +     D  ++  T+   R     E P  IR ++      I       
Sbjct: 462 DRKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISH 521

Query: 444 NRIEAIRTAIEMLNKQDV 461
             I+ ++  +E L   D+
Sbjct: 522 GEIDGVKFLVEKLESNDM 539


>gi|327474518|gb|EGF19923.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK408]
          Length = 444

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 105/347 (30%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   Y +   +A    N   +   +T            G    +   L V G  GK+S  
Sbjct: 59  IQPDYEIIAGNAFRPDNNVEIAYADTNGIGYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLDLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|306824891|ref|ZP_07458235.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304433102|gb|EFM36074.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 444

 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 105/347 (30%), Gaps = 43/347 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+  +A+   +      ++   +      +FL  F            + V G  GK+S  
Sbjct: 65  IIAGNAFRPDNNVEIAYADKNGISYKRYHEFLGSFMRDFV------SMGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +SF IG  +   S      +                         E  
Sbjct: 119 GMLSHVLSHITDTSFLIGDGTGRGSENAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        +Y +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFVYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
           A   E+ K   NA         +        +         T+   G++   F  P  G 
Sbjct: 209 A---ELRKITANAPIYYYGFEAEDNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G D  LV EHL+    V  RF     N  G  I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKVVN--GTIIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL  AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAKALSQADAVYL 370


>gi|119357665|ref|YP_912309.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355014|gb|ABL65885.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 474

 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 94/283 (33%), Gaps = 22/283 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+  DH D   +      +  RL   L+P     ++  D   +  V  RA  
Sbjct: 182 RPDVVIINNIEFDHADIFNSLDDIKRS-FRLLVNLIPGNGLLLVNGDAPDALAVASRA-- 238

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320
             CRV   G  G      + +   ++     +  +G        PL G   + N + A  
Sbjct: 239 -FCRVERFGLNGNSEWSARNISLENSLTGFDLYYKGNLQGTCHVPLFGSHNIMNTIAAVA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             I  GI    +   L        R E    ++    +  D+AH   +++  L+ I  + 
Sbjct: 298 AAIHSGISFDSIAAGLPLFKRPKRRMEITDDSANRITLIEDFAHHPTAVKATLEAIADLY 357

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSE--------DPEKIRA 430
             R I+           +     ++A   D A I I+   + R E        D E+++ 
Sbjct: 358 PKRRIIACFEPRSNTTTRNIFQNELAACFDPASIVIMGMVH-RPERYRPEERLDTERLKN 416

Query: 431 EIIHGIPGFIEKGNR-----IEAIRTAIEMLNKQDVLVVAGKG 468
           E+ +        G        + I      L  +DV+V+   G
Sbjct: 417 ELENKGKTVFLAGENPSIYPQDIIGFITTRLQPEDVVVLLSNG 459


>gi|322377008|ref|ZP_08051501.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M334]
 gi|321282815|gb|EFX59822.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M334]
          Length = 444

 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   IY +DA  +++M  A            +G       +         T+   G
Sbjct: 199 T---KGLFIYGEDAELRKIMSDAP---IYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QELGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|221232233|ref|YP_002511386.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae ATCC
           700669]
 gi|254766025|sp|B8ZLC2|MURC_STRPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|220674694|emb|CAR69267.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae ATCC
           700669]
          Length = 444

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 103/346 (29%), Gaps = 39/346 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVAS 131
                +   +A    N   +V  +             G    + +++   G  GK+S   
Sbjct: 60  DGDMEIIAGNAFRPDNNVEIVYADQNGISYKRYHEFLGSFMRDFVSMGVAGAHGKTSTTG 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +      +SF IG  +   S      +                         E   
Sbjct: 120 MLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD---------------------EYER 158

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H +  H            TN+  DH DY  + +  FNA     +++        +Y +DA
Sbjct: 159 HFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFVYGEDA 209

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
              E+ K   +A         +G       +         T+   G++   F  P  G  
Sbjct: 210 ---ELRKITSDAPIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQNLGQFHIPTFGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA    GL    G D  LV EHL+    V  RF     N     I  D+AH    + 
Sbjct: 267 NIMNATAVIGLLYTAGFDLNLVREHLKTFSGVKRRFTEKIVND--TVIIDDFAHHPTEII 324

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             L   R    S  I+ VF                 AL+ AD   +
Sbjct: 325 ATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|52786856|ref|YP_092685.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus licheniformis ATCC
           14580]
 gi|163119604|ref|YP_080271.2| UDP-N-acetylmuramate--L-alanine ligase [Bacillus licheniformis ATCC
           14580]
 gi|319647385|ref|ZP_08001607.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. BT1B_CT2]
 gi|59798182|sp|Q65G22|MURC_BACLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52349358|gb|AAU41992.1| MurC [Bacillus licheniformis ATCC 14580]
 gi|145903114|gb|AAU24633.2| UDP-N-acetyl muramate-alanine ligase [Bacillus licheniformis ATCC
           14580]
 gi|317390732|gb|EFV71537.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. BT1B_CT2]
          Length = 432

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 110/356 (30%), Gaps = 44/356 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + +++  +S+ IG   T             +  Y    LSY 
Sbjct: 104 IAVTGAHGKTSTTGLLSHVIKKAKPTSYLIG-DGTGKGCENSEYFVLEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    +      TN+  DH DY       F+A        
Sbjct: 162 -------------------------QPDYAIMTNIDFDHPDYFANIDDVFDA---FQTMA 193

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      I   DD Y   +MK   N          +  F   + V          + V  
Sbjct: 194 LQVNKGIIACGDDEY---LMKIHANVPVVYYGFAEENDFQ-ARNVIKNTEGTTFDVFVRN 249

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +D F  P  G   V NAL    LC    +D  ++ E L+    V  RF      S+  
Sbjct: 250 TFYDTFYIPAYGSHNVLNALAVIALCHYEQVDVDIIKEGLQTFGGVKRRFNEKHAGSQ-- 307

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    + + ++  R       I+ VF                 +L  AD   +
Sbjct: 308 VLIDDYAHHPTEITVTIEAARQKYPERDIVAVFQPHTFTRTQSFLNEFAESLKKADYVYL 367

Query: 416 TDDN-PRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D      E+  K+   ++   IP          +I    E      VL+  G G 
Sbjct: 368 CDIFGSARENAGKLTIGDLQEKIPQAKLIDENDTSILKEHENA----VLIFMGAGD 419


>gi|170728148|ref|YP_001762174.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
 gi|169813495|gb|ACA88079.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
          Length = 461

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 115/367 (31%), Gaps = 42/367 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK+S +S +  I +  G     +     +      +  T  SP ++ +A 
Sbjct: 107 RWVLAVSGTHGKTSTSSMLAWILEYCGYEPGFL--IGGVPQNFGVSARTGNSPFFVVEAD 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+                       +       NL  DH D     +A    +    
Sbjct: 165 EYDSAFFDKRSKFVHY------------QPRTLVINNLEFDHADIFDDLKAIQR-QFNHV 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P E   I   +     EV+K    +     S                 +  Q  + 
Sbjct: 212 IRTVPGEGKIIWPKESQAVTEVIKMGCWSEQEFYSSSADTGQAGWSTKLIADDGHQFELF 271

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G       + L G+  V NA +A      +G+     +E L K      R E +GT  
Sbjct: 272 FDGVSQGTLDWQLIGQHNVENATMAVAAARHVGVKPQAAIEALVKFQPPKRRMELIGT-V 330

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--- 410
            G  +Y D+AH   ++   L+  R       I +                 +A  +A   
Sbjct: 331 NGIEVYDDFAHHPTAIATTLQGTRAKVGEGKITIILEPRSNTMKSGVHKDTLAGSMALAN 390

Query: 411 DIAIVTDDN---------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  +   DN          ++E P K+  EI              E + T  E     D 
Sbjct: 391 EAYLYQADNIDWDLASAMNKAELPVKVLYEID-------------EIVETVAEKAESGDT 437

Query: 462 LVVAGKG 468
           +VV   G
Sbjct: 438 IVVMSNG 444


>gi|306829827|ref|ZP_07463014.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus mitis ATCC
           6249]
 gi|304427838|gb|EFM30931.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus mitis ATCC
           6249]
          Length = 444

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSENAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   NA         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITANAPIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QELGQFHIPTFGHHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ +F                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQALNQADAVYL 370


>gi|260435255|ref|ZP_05789225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
 gi|260413129|gb|EEX06425.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
          Length = 461

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 114/313 (36%), Gaps = 27/313 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                          + +TGT+GK++V   +  + + SGL++   G              
Sbjct: 98  GEMDLAWDALQQIPWIGITGTNGKTTVTHLLSHVLEASGLTAPMGGNMGL---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   LA  +   ++     + +E SS+ ++      +    G +T L  DH++ H +
Sbjct: 148 ---SAADLAFQIGSGATPRPDWLVMELSSYQIEAA--PAVAPKIGIWTTLTPDHLERHGS 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +AY   K      LL +   A+  ADD   ++  +R+ + G  V S G +         
Sbjct: 203 LEAYRAIK----RGLLERSECALFNADDPDLRQ-QRRSWDRGTWVSSEGARPDDQPAD-- 255

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             I ++  V  +           +PG     N L+ A   + +G+    + + L     V
Sbjct: 256 LWIDDEGMVRNNATRLFAADALAMPGRHNRQNLLLVAAASLKVGLSPQQIADALRTFPGV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +GT +         A   ++ E+ L+ ++       +VV   G  +       +
Sbjct: 316 PHRLEKLGTLAGASVFNDSKATNYDAAEVALRAVQ-----GPVVVLAGGQTKQGDAGGWL 370

Query: 403 GKIALDLADIAIV 415
            ++      + + 
Sbjct: 371 EQLHTKACSLIVF 383


>gi|313668293|ref|YP_004048577.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria lactamica ST-640]
 gi|313005755|emb|CBN87209.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria lactamica 020-06]
          Length = 458

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 123/370 (33%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHRH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +    +  +V
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTE----YGWQV 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              +      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 261 GEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHAGVDIRTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                 +L  AD            D +   AE +  + G +  G   +A +   ++    
Sbjct: 380 KAALPASLKEADQVFC---YAGGVDWD--VAEALAPLGGRLHVGKDFDAFVAEIVKNART 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|293366318|ref|ZP_06612998.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319556|gb|EFE59922.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 437

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 125/360 (34%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY +     ++A    F+ +
Sbjct: 162 -------------------------HPDYAIMTNIDFDHPDYFKNIDDVYDA----FQHM 192

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            L  +   I + DD Y +++     +    V   G+ +   I+ K +       Q  + +
Sbjct: 193 ALNVKKGIIAWGDDEYLRKL-----DVDIPVYYYGFKETDDIYAKNIQITEKGTQFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G   + NAL    +     ++   + E L     V  RF     +++
Sbjct: 248 KGEFYDQFLSPQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAESLSKADQV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +      E+   +   ++I+ I G             +I++L K D  V++  G G 
Sbjct: 366 FLCEIFGSIRENTGDLTIEDLINRIDGSTLID------ENSIDVLEKFDNAVILFMGAGD 419


>gi|28897232|ref|NP_796837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839040|ref|ZP_01991707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366058|ref|ZP_05778524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878313|ref|ZP_05890668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896402|ref|ZP_05904898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|33301382|sp|Q87SG6|MURD_VIBPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28805441|dbj|BAC58721.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747468|gb|EDM58416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087563|gb|EFO37258.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093171|gb|EFO42866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111373|gb|EFO48913.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
          Length = 437

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 149/405 (36%), Gaps = 72/405 (17%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V +   +L   +    +   TP  VV +      LFA  +     + ++A+TG++G
Sbjct: 69  ADLVVTNPGIALATPEIQTVLAKGTP--VVGDIE----LFAWAVN----KPVVAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL+    G     +                      L  Q     
Sbjct: 119 KSTVTDLTGVMAKAAGLTVGVGGNIGVPA--------------------LELLEQDADLY 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F+        A+
Sbjct: 159 VLELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDH----AELAV 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFD 301
           +  DD       +        V++ G   +   L+    +   + + Q+V  S E     
Sbjct: 213 VNRDDQ------ETYPEVEMPVVTFGSDEQAYGLEVDGSRTWLLDHGQRVIASDE----- 261

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+  + NALV   L  A G+D    L  L+    +  R + V  N RG +   D
Sbjct: 262 --LKLVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-RGVKWVND 318

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTDDN- 419
              T+ +  M   +    T    ++V G G   D    +PI   + L L    +  DD  
Sbjct: 319 SKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGLDGDDFM 378

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P  E                I      + I+     L   D++++
Sbjct: 379 PLHE--------------SAIRFNTMEDVIQQISSQLKSGDMVML 409


>gi|257462517|ref|ZP_05626929.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. D12]
 gi|317060172|ref|ZP_07924657.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D12]
 gi|313685848|gb|EFS22683.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D12]
          Length = 447

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 122/352 (34%), Gaps = 43/352 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L AS L    P+  +AV GT GK++ +S +         +    G    I+S   + ++ 
Sbjct: 93  LLASLLN---PKLGIAVAGTHGKTTTSSMMSATMLSLDPTIVVGGILPEIAS---NAKVG 146

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                     ++       + + +               +      TN+  DH++ H   
Sbjct: 147 MGEYF-----IAEADESDNSFLFM---------------RPKYAIITNIEEDHLETHGNL 186

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKV 282
           +    +  +  ++    E   ++  D    + V         ++ S G  Q   I  K +
Sbjct: 187 ENIKKSFRQFVDQ---TERQVLVCKDCVNVRSVFSENE----KITSYGIEQEADIMAKNI 239

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             +  K    +  EG++   F   +PG+  + N+L      +  G+    + + L     
Sbjct: 240 EIVDGKTSFEVWTEGENQGRFSISIPGKHNILNSLPVIYFALKFGVSKEEIQDKLLHFRG 299

Query: 342 VPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
              R++ +     +  +I  DYAH    ++  LK +++I +G+II +F            
Sbjct: 300 SKRRYDILYWDQEKNRKIIDDYAHHPTEIQATLKGVKSIETGKIIGIFQPHRYSRVQFLL 359

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIE 447
                  +  D  ++       E       EK  A +I  IP  +    R E
Sbjct: 360 ERFGNCFEGLDELVLLPIYSAGERNDSGISEKDIANLIENIP--VTCIERKE 409


>gi|288575707|ref|ZP_05977461.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa ATCC 25996]
 gi|288567146|gb|EFC88706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa ATCC 25996]
          Length = 472

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 120/360 (33%), Gaps = 22/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L V GT GK++ AS +  + + +GL+   +     I    ++  ++   P    +
Sbjct: 117 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSVSARLPQTPRQ 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 172 DPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAI-QTQFH 230

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   +        ++ + +       V   G +    H  +V  ++      
Sbjct: 231 HLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGIE----HGWQVGEVNANGSFD 284

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++GK      + L G     NAL         G+D     E L     V  R E  GT
Sbjct: 285 VLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKNVKRRMEIKGT 344

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
              G  +Y D+AH   ++E  ++ +R       I+              +   +  +L  
Sbjct: 345 -VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTMKAALPESLKG 403

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           AD            D +   AE +  + G +  G   +A +   ++     D ++V   G
Sbjct: 404 ADQVFC---YAGGVDWD--VAEALAPLGGKLHVGQDFDAFVAEIVKHAEAGDHILVMSNG 458


>gi|319938679|ref|ZP_08013043.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus anginosus
           1_2_62CV]
 gi|319811729|gb|EFW07995.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus anginosus
           1_2_62CV]
          Length = 443

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 105/347 (30%), Gaps = 42/347 (12%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVAS 131
            +   +   +A    N   +   +             G    + +++   G  GK+S   
Sbjct: 60  QADVEVIAGNAFRPDNNIEIAYADANGIAYKRYHEFLGTFMRDFVSMGVAGAHGKTSTTG 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +      +S+ IG  +   S                K  ++ + +   H       
Sbjct: 120 MLAHVLSNITDTSYLIGDGTGRGSANA-------------KYFAFEADEYERHFMPYH-- 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                             TN+  DH DY  + +  FNA     +++        +Y +D 
Sbjct: 165 ------------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQV---SKGLFVYGEDK 209

Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
             + V   A      +   G+ +G       +          +S  GK+  +F  P  G 
Sbjct: 210 ELRRVTANAP-----IYYYGFKEGNDFIAHDLLRSTTGSSFKVSFCGKELGEFKIPSFGR 264

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G D  LV EHL     V  RF     N  G  I  D+AH    +
Sbjct: 265 HNIMNATAVIGLLYTAGFDLTLVREHLATFGGVKRRFTEKVVN--GTTIIDDFAHHPTEI 322

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 323 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVYL 369


>gi|312109889|ref|YP_003988205.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y4.1MC1]
 gi|311214990|gb|ADP73594.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y4.1MC1]
          Length = 434

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 123/395 (31%), Gaps = 55/395 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++  A      P++      +FL  F  +         +AV G+ GK+S    +  + Q 
Sbjct: 75  EEIQAAYELGVPVI---RYHRFLGEFLQKF------TSIAVAGSHGKTSTTGLLAHVMQG 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +S+ IG   T             +  Y    LSY                       
Sbjct: 126 AHSTSYLIG-DGTGKGIEGSKYFVFEACEYRRHFLSYF---------------------- 162

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+  DH DY       F+A   +  ++   +   I   DD Y +++   
Sbjct: 163 ----PDYAIMTNIDFDHPDYFANIDDVFSAFQEMALQV---KKGIIACGDDEYLQKI--- 212

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
              A   VL  G+        + V          + V    F  F  P  G+  V NAL 
Sbjct: 213 --KAKVPVLFYGFGDDNDFQARNVVKTTEGTSFDVFVRNTFFASFEIPRFGDHNVLNALA 270

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              LC    ID  ++ E L+    V  RF      ++   +  DYAH    +   +   R
Sbjct: 271 VIALCHYEEIDVHIIQERLKTFQGVKRRFSEKVLGNQ--ILIDDYAHHPREIIATIDAAR 328

Query: 378 TITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIH 434
               GR IV +F                 +L  AD   + D      E   K+   ++  
Sbjct: 329 QKYPGREIVAIFQPHTYTRTQAFLREFAESLQQADQVYLCDIFGSAREHHGKLSIQDLQA 388

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            IP          ++    E      VL+  G G 
Sbjct: 389 QIPNSRLIQENDTSVLKQHENA----VLIFMGAGD 419


>gi|285017564|ref|YP_003375275.1| hypothetical protein XALc_0769 [Xanthomonas albilineans GPE PC73]
 gi|283472782|emb|CBA15287.1| conserved hypothetical protein [Xanthomonas albilineans]
          Length = 458

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 143/415 (34%), Gaps = 29/415 (6%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPEN 116
           ++P+ I      ++V +A S        R N  +  V +  +     A  L  +      
Sbjct: 54  YLPEHIEADCAQVIVGNALS--------RGNLAVEAVLDAGRAYISGAQWLSEQVLPGRE 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            LAV GT GK++  S +  + Q +G     +        F    RL  P           
Sbjct: 106 TLAVAGTHGKTTTTSILTWLLQSAGREPGFL-IGGVAEDFGVSARLGGPVAAPQRPLFVV 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + +  T            + +    + +     NL  DH D      A       L   
Sbjct: 165 EADEYDTAFFD-------KRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHHLV-R 216

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     I+  +DA+ +EV+  A      V   G+   F    ++ A    +   +   
Sbjct: 217 TVPHRGRLIVNGEDAHLREVL--AMGCWTPVERFGFDPGFDWSARLLAADGSRFAVLHAG 274

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +     + L G   V NAL A     A+G+  A V+  L +   V  R E +G  ++G 
Sbjct: 275 QQLGVVEWSLLGRHNVMNALAALAAAHAVGVAPAQVIPALARFRSVKRRLEVLG-QAQGI 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAI 414
            +Y D+AH   ++   L+ +R       IVV                 +A  L++AD  +
Sbjct: 334 TVYDDFAHHPTAIRTTLEGLRAKVGTARIVVAMEPRSNSMRLGAHADALAPSLEVADAVV 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
                 R E       ++I  + G       ++A+  A++      D +V    G
Sbjct: 394 FLQ---RPELAWD-AGKVIAAVRGQAHAATDVDALLAALQTQARAGDHVVFMSNG 444


>gi|226950973|ref|YP_002806064.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
 gi|254766043|sp|C1FNC3|MURD_CLOBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226843277|gb|ACO85943.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 458

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 123/362 (33%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++    ++  G   T                
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEDYRTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  + E+   A         +G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNN-LLVLNKDDDLTNEMENEA---------LGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++++GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTIQGKEVCDSKDIKLKGRHNIANLLAAFCMINKY-VSIDSMKYVATNFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+     G + Y D   +S S     + +  + S    V+   GG   +     + +  
Sbjct: 319 EFI-REVNGVKYYNDSIASSPS-----RTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQD 460
            D   I I+  D        KI++     I         +   +  EA++ A  M  K D
Sbjct: 373 YDKIKILILMGD-----TKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|88812510|ref|ZP_01127759.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
 gi|88790296|gb|EAR21414.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
          Length = 457

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 131/410 (31%), Gaps = 39/410 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V +A S  + +     +  +L     +          +      +LAVTGT GK++ 
Sbjct: 64  CVLVGNALSRGNPALEQVLDQRLLYTSGPQWLAEEVMRERW------VLAVTGTHGKTTT 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  I + +GLS   +       +F    RL +               +G  + +   
Sbjct: 118 SSLLAWILEYAGLSPGFL-IGGVPGNFGYSARLGSGD---------LFVIEGDEYDTAFF 167

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                  H     +       NL  DH D      A    +       +P     I   D
Sbjct: 168 DKRSKFIH----FRPRTVVINNLEFDHADIFPDLAAIQR-QFHYLIRTVPSTGLIIANGD 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D    + +  A      V+  G  G     +         + T++ +G++     PLPGE
Sbjct: 223 DQTITDTL--ALGCWTPVIRFG-TGVNNDWRLEAIDGPNARATLTGKGQNRAITLPLPGE 279

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A       G+     +E L     V  R E  G    G  +Y D+AH   ++
Sbjct: 280 HNARNILAALLAAQHTGVTLDQGIEALRHFRGVRRRLERRGIVG-GVELYDDFAHHPTAI 338

Query: 370 EMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED---P 425
              +  +R    GRI+ V          G        +L  AD   V    PR+ +    
Sbjct: 339 AATIAALRGRHQGRILAVLEPRSNTMRLGVHRNTLAASLQQADRVFVYR--PRTLEWNLE 396

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HE 470
           +     +        +    I+ I  A       D ++V   G     HE
Sbjct: 397 DAFAPLLGERALITEDIECLIDYITAA---AQIGDAVLVMSNGAFENIHE 443


>gi|304383669|ref|ZP_07366128.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella marshii DSM
           16973]
 gi|304335193|gb|EFM01464.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella marshii DSM
           16973]
          Length = 458

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 134/357 (37%), Gaps = 33/357 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V GT GK++ ++    I  +S      +   + +   ++D               +Y+
Sbjct: 115 LCVAGTHGKTTTSTMCAHIMHQS-----HVDCNAFLGGISKDYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA  +    H L   +      T+   DH+D + T++AY  +  R +  L
Sbjct: 158 LSDDSDYVVIEADEYDRSFHWL---RPWMSVITSTDADHLDIYGTREAYLES-FRHYTTL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + +    II          MK     G R+   G      H K +   + +         
Sbjct: 214 IREGGALII-----KHGLAMKPDVKEGVRIYEYGRDEGDFHAKNIRIANGEITFDFVSPV 268

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++ +     LP    + N + A  +    G  +  +   ++  H V  RF+F    +   
Sbjct: 269 ENVENVEMGLPIPINIENGVAAMAMAQLNGCTADELRYGMKTYHGVERRFDF-KIKTDHC 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +   +K++R +  GR I  +F                 AL L D  I+
Sbjct: 328 VLLSDYAHHPKEIYQSIKSMRELYEGRRITAIFQPHLYSRTRDFYQEFAEALSLLDEVIL 387

Query: 416 TDDNPRSEDP-EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D  P  E P E + +++I+    PG  ++  + E +   +      DVL++ G G 
Sbjct: 388 CDIYPARELPIEGVTSQLIYDCLKPGVEKRMIKTEEVLNVVRE-KDFDVLMILGAGD 443


>gi|46199028|ref|YP_004695.1| UDP-N-acetylmuramate-alanine ligase [Thermus thermophilus HB27]
 gi|46196652|gb|AAS81068.1| UDP-N-acetylmuramate-alanine ligase [Thermus thermophilus HB27]
          Length = 446

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 126/410 (30%), Gaps = 56/410 (13%)

Query: 82  FSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
               +  + P +V          + + L A  L  +    +    G +   +    +  I
Sbjct: 63  VPTPVPPDHPEVVEARKRGLRVLRRMELLAHFLAQRPSAGVTGTHGKT---TTTGMLAAI 119

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +GL  +                       +L   L+ L            +      
Sbjct: 120 LLEAGLDPWV----------------------FLGGELALLPGNARPGRGPRVAEVDESD 157

Query: 197 HRLDGIKLIAGSFTNLGRDHI--------DYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                +++     TNL  DH+        +YH++ +A   A        L      ++ A
Sbjct: 158 PLFREVRVSVAVATNLEADHVAPPGERAPNYHESLEALKEA----MRGFLAGAKTVVVPA 213

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + +            G  G+    K   +        +  EG   +    +PG
Sbjct: 214 MDPGLLALTEGLPRRL-----FGPGGEVWAEKVDLSPSGASFRLVHREGPLGEVHLRVPG 268

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V+NAL AA   +A+G     +   L +   V  RFE VG    G  +  DYAH    
Sbjct: 269 RHNVHNALAAALAALALGASPEAISRGLSRFPGVGRRFERVGEVG-GAWVVDDYAHHPTE 327

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS----ED 424
           ++  L+    ++  R+ V F         +       AL  A   +V           E 
Sbjct: 328 VQATLEAAL-LSGRRVRVFFQPHRLLRTQELWEAFAQALKGAHEVVVLPVYTAGERGRES 386

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           PE +   I   +        + ++ EA+  A      +D+L+  G G  T
Sbjct: 387 PEALSDRIAKRLEDLGRPARRMDKEEALAYARATARPEDLLLFMGAGDVT 436


>gi|315657994|ref|ZP_07910868.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis
           M23590]
 gi|315497030|gb|EFU85351.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis
           M23590]
          Length = 437

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 121/370 (32%), Gaps = 50/370 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     Q +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGLGIPQSDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    +      TN+  DH DY +  +  F+A    F+E+
Sbjct: 162 -------------------------RPDYAIMTNIDFDHPDYFKDVEDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
                 AII + DD + +++     N    +   G   K   +   +       +  + +
Sbjct: 193 ANNVKKAIIAWGDDEHLRKL-----NVDIPIYYYGLSDKDDVYANDIQITDKGTEFDVYI 247

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GK +  FL P  G   + NAL    +     +D A + E LE    V  RF    T   
Sbjct: 248 NGKYYNHFLTPQYGNHNIQNALAVITISYLEDMDVANIKEALETFGGVKRRFN--ETKYD 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R    +  +I VF                 +L  AD  
Sbjct: 306 QQILVDDYAHHPREISATIETARKKYPNKEVIAVFQPHTFSRTQAFLNEFADSLSKADHV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            + +      E+   +   ++I  + G          I    +      V++  G G   
Sbjct: 366 FLCEIFGSIRENTGDLTIQDLIKRVDGSALIDENNIDILEQFDNA----VILFMGAG--D 419

Query: 472 VHIVTNGEKK 481
           +  +    + 
Sbjct: 420 IQKIQRAYEH 429


>gi|300715306|ref|YP_003740109.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
 gi|299061142|emb|CAX58249.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
          Length = 438

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 143/402 (35%), Gaps = 58/402 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ IV S   +L   S    +   + +V +   F          +    I+A+TG++G
Sbjct: 64  QAADLIVASPGMALAHPSLMDAAQAGVEIVGDIELF--------CREAQAPIVAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + V  + + +G      G     +                      L  Q     
Sbjct: 116 KSTVTTLVGDMAKAAGWQVGVGGNIGLPALM--------------------LLEQPAQLY 155

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            +E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E      +  
Sbjct: 156 VLELSSFQLE--TTASLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRVYEN----AAVC 209

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
           ++ ADDA +  V         R +S G      HL             ++V+G +     
Sbjct: 210 VVNADDAMTFPV----RGLDARCVSFGINAGDYHLATESGESW-----LNVKGDNLMKTS 260

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+    NAL A  L  A+G+  A  L+ L     +  RF+     +    I    
Sbjct: 261 DMTLVGQHNQTNALAALALAEAVGLPLASSLKALTTFSGLAHRFQIALDRNGVRWINDSK 320

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    S E  L  ++    G + ++   G  +     P+   +  D         D   +
Sbjct: 321 ATNVGSTEAALNGLQ--VQGTLWLLL-GGDGKSADFSPLTRYLQGDNVRTYCFGRD---A 374

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   ++R EI       +      +A++     +   D++++
Sbjct: 375 QALAELRPEIA------VRTETLADAMKQIATQVKPGDMVLL 410


>gi|168180985|ref|ZP_02615649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
 gi|182668046|gb|EDT80025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
          Length = 458

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 123/362 (33%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++    ++  G   T                
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEDYRTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  + E+   A         +G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNN-LLVLNKDDDLTNEMENEA---------LGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++++GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTIQGKEVCDSKDIKLKGRHNIANLLAAFCMINKY-VSIDSMKYVATNFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+     G + Y D   +S S     + +  + S    V+   GG   +     + +  
Sbjct: 319 EFI-REVNGVKYYNDSIASSPS-----RTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQD 460
            D   I I+  D        KI++     I         +   +  EA++ A  M  K D
Sbjct: 373 YDKIKILILMGD-----TKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|218961097|ref|YP_001740872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729754|emb|CAO80666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 472

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 132/382 (34%), Gaps = 49/382 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTG++GKS+  S +  I    G  S   G    I        +  P         
Sbjct: 129 SKIIAVTGSNGKSTTVSLIHHILTGLGKKSLLAG---NIGDAFCSYDIEKP--------- 176

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G  ++ +E SS  LD   ++  +       N+  DHID + + + Y  +K+ +F
Sbjct: 177 ------GWDYIVLEISSFQLDL--INSFQPDVAVLLNITPDHIDRYNSFEDYALSKVNIF 228

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     ++  + +     S EV     +   R L             +   + +      
Sbjct: 229 KNQEMTDTAVLFWD----SPEVKHFTKDIKARKLYFSLSPNDNAFAYLANNYIQFGSETK 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V    F    P        NA+ A     A+  +   + E ++    +P R E+V T  +
Sbjct: 285 VPLSYFAIKGP----HNYANAMSAMLAVYALIPEPTKIAEAVKGFKSLPHRLEYVDT-IK 339

Query: 355 GGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G   Y D  A  ++S+   L +           +   G D+ +    +   +       A
Sbjct: 340 GVSFYNDSKATNTDSVRSALNSFEQPIR-----IIMGGSDKGEDYSVLAADL-QKKVKKA 393

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T D          R ++     G I      +    +R A    ++ D++V++     
Sbjct: 394 YLTGDT---------REKMRKTFSGKIPLECIADFELTVRKAFSDSDEGDIIVLS-PACA 443

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           +     N E++ +   +I+  I
Sbjct: 444 SFDRFNNYEERGNFFKEIVARI 465


>gi|329737491|gb|EGG73744.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU045]
          Length = 437

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 127/360 (35%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +            S  +  +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG--------LPGSDYFAFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H            TN+  DH DY +     ++A    F+ +
Sbjct: 155 ------------RRHFLSYH------PDYAIMTNIDFDHPDYFKNIDDVYDA----FQHM 192

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            L  +   I + DD Y +++     +    V   G+ +   I+ K +       Q  + +
Sbjct: 193 ALNVKKGIIAWGDDEYLRKL-----DVDIPVYYYGFKETDDIYAKNIQITEKGTQFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G   + NAL    +     ++   + E L     V  RF     +++
Sbjct: 248 KGEFYDQFLSPQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAESLSKADQV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +      E+   +   ++I+ I G             +I++L K D  V++  G G 
Sbjct: 366 FLCEIFGSIRENTGDLTIEDLINRIDGSTLID------ENSIDVLEKFDNAVILFMGAGD 419


>gi|159900026|ref|YP_001546273.1| UDP-N-acetylmuramate--alanine ligase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893065|gb|ABX06145.1| UDP-N-acetylmuramate--alanine ligase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 443

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 99/277 (35%), Gaps = 18/277 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +    G  TNL  DH+D + +Q  Y  A       + P     ++  DD  ++ V+   
Sbjct: 164 ALSPAIGIITNLDWDHVDIYPSQAEYDAAFREF--AIKPSLQHLVLCGDDLGTQRVLADV 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAA 319
               C +     +        V A  +     + S   +       + GE  V NAL+A 
Sbjct: 222 PAIRCGL----TEHNDWRATAVQATPDGMLFELISPAAEPMTVQLAVSGEHNVRNALLAL 277

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378
               + GID A+ +  +        RFE  G      R++ DYAH    +   L   R  
Sbjct: 278 AAAHSYGIDLAVAVAAIAHYQGAARRFEPKGQVG-AVRVFDDYAHHPVEIRATLAAARKR 336

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE----DPEKIRAEIIH 434
             + RI+  F               + A + AD+  +       E    DP    A+I+ 
Sbjct: 337 FPAQRIVAYFQPHTFSRLEAFLADFQTAFEQADLVRIGAVYGARETSKGDP---TAQIVA 393

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           G+  P  +  G+  +A    +  +   DV++  G G 
Sbjct: 394 GMQHPNALAVGDLDQAFEQLLRDVQAGDVVLTLGAGD 430


>gi|90411962|ref|ZP_01219970.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum 3TCK]
 gi|90327220|gb|EAS43592.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum 3TCK]
          Length = 452

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 120/365 (32%), Gaps = 38/365 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV GT GK++ AS +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVAGTHGKTTTASMLAWILEDCGYEPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLKAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +                 E +++  + GC    + + G   H      + +     
Sbjct: 207 LVRTVPSNGRILA-----PKGVESIQQTLDMGCWS-ELEFTGDDGHWIAKKQMTDGSVFD 260

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G       + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VYLDGLMIGTVRWDLVGDHNVSNALMAIAAARHVGVTPDLGCEALATFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
             +G ++Y D+AH   ++E+ L  +R  +   + I+                G I  AL+
Sbjct: 320 EVKGVKVYDDFAHHPTAIELTLGGLRAKVGDEQRILAVLEPRSNTMKLGVHKGDIAPALN 379

Query: 409 LADIAIVTDDNPRSEDPEKI---RAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            AD   +         P+ I     EI  G   P   +  +  + +   +      D ++
Sbjct: 380 AADYVFIYQ-------PDTIPWSVNEIADGCSQPAATDI-DLDKLVDKIVTEAKDGDTIL 431

Query: 464 VAGKG 468
           V   G
Sbjct: 432 VMSNG 436


>gi|318042994|ref|ZP_07974950.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CB0101]
          Length = 480

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 138/430 (32%), Gaps = 59/430 (13%)

Query: 62  QAIAQGAE---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            AI  G      +VVSSA    +          + +   +    ++ A+       ++ +
Sbjct: 66  AAIRSGTSTQPLVVVSSAVPATNPELQEARRAGLEIAHRSDVLAAMIAA-------QSSV 118

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV G+ GK++ ++ +  +   +      +     + +F  + R    +       ++   
Sbjct: 119 AVAGSHGKTTTSTLIASLLHATDHDPTAV-IGGVVPAFGSNGRNGKGA-----LLVAEAD 172

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
               T V  +A                 G  TNL  DH D++    A      R      
Sbjct: 173 ESDGTLVKFQAW---------------LGVITNLELDHTDHYADLVALIATLQRFGRGCE 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +      D      ++    NA     +   +G       V    +        +G+
Sbjct: 218 QLLA----NRDCP----ILSEQFNASHWWSTTNPEGVDFAAIPVELSGDSTLAEFYEQGQ 269

Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F  PLPG   + NA  A   C   G+  A +   +E L     RF++ GT +   +
Sbjct: 270 CVGRFTLPLPGLHNLSNATAAMAACRLHGVSFAELRLAVESLQAPGRRFDYRGTWAE-RQ 328

Query: 358 IYVDYAHTSNSLEMILKNIRTI----------TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +  DYAH  + +   L   + +             R++ VF         +      +AL
Sbjct: 329 VVDDYAHHPSEVGATLATAQLMVSSGRSPLPEVPQRVLAVFQPHRYSRTAEFLEPFAVAL 388

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEM-LNKQ 459
             AD  ++       E P        + A I    P   +   + +E +  A+       
Sbjct: 389 GQADEVLLAPLYAAGEAPIAGISSHALAAAIQRLQPDLTVTVTDSLEELADAVAQRSLPG 448

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 449 DLVLAMGAGD 458


>gi|227509379|ref|ZP_03939428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227191091|gb|EEI71158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 135/389 (34%), Gaps = 46/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y  +  +  +    PI+            A+++       I+ VTG++GK++  + + +
Sbjct: 83  PYDNEVVARAVSEKMPIITE-------VELAAQMTD---AEIIGVTGSNGKTTTVTMITK 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I                I   A +  L + +   +   LS     G              
Sbjct: 133 ILNEE-RKKGHAYAAGNIGVSATETALKSTADDTIVMELSSFMLLG-------------- 177

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +  +       TN+  +H+DYH+T++ Y NAKMR+     P +   ++  D    ++
Sbjct: 178 ---IKKLHPHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDD-FFVVNFDSDEWRQ 233

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + KR+            +      +K   ++   +  ++ +         +PG+  V NA
Sbjct: 234 LSKRSKAQIVPFARTS-EIDRGAYEKNGKLYYNDEFIMNADD------IKVPGQQNVENA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A      +G  +  +   LE    V  R +FV   + G + Y D   T   +E     
Sbjct: 287 LAAIATAKILGKSNLAITNVLETFTGVRHRVQFV-LEADGRKFYNDSKAT--DIEATQIA 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +        +V+   G DR      ++ +    +    +        E+  +       G
Sbjct: 344 LEGFDHP--VVLLAGGLDRGYTFDKMVPQFKQHVKAAVLFGQTADLLEESLQ-----KAG 396

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    +  N  EA+  A    +  D++++
Sbjct: 397 VKNITKVDNLDEAVPAAYHYSDSGDIILL 425


>gi|295677465|ref|YP_003605989.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
 gi|295437308|gb|ADG16478.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
          Length = 1046

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 145/409 (35%), Gaps = 43/409 (10%)

Query: 69   EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              ++ S              + P+L V +T K +    S    +    +LAVTG++GK++
Sbjct: 634  VGVITSDPDVQAQL-----KDLPVLHVADTGKAILAMGSYARKQMSGAVLAVTGSAGKTT 688

Query: 129  VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            + + +       G ++               +      P  L+  L+ + +    HV +E
Sbjct: 689  LVAMLADALNAYGQTAA--------------SAFNANLPHGLSWNLASI-NWDTPHVVLE 733

Query: 189  ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             +   + +  L   +     FTN+   H+    T       K  +F   +   S  I+  
Sbjct: 734  VAVGNMGKSAL-IARPNISIFTNIQPAHLGKSSTITDIARTKSMIFRG-MSAGSIVILNR 791

Query: 249  DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D    + V + A      +++ G   +    + V     +Q  T+ + G+D  +     G
Sbjct: 792  DMLEWETVYQAAMEQDLNIVTYGTTAQ-SDFQLVDHDALRQSATVRIRGRDITYPIGAAG 850

Query: 309  EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVD-YAHT 365
                 N++      +A+       LE + +   + GR + +     G    I    Y   
Sbjct: 851  LHMALNSVAVLAAVLALNYPLEPALERIARFTALSGRGQELELTLDGRHMTIIDHAYNAN 910

Query: 366  SNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S++  L+++R +    R + V G   +       +   +A  +    I         D
Sbjct: 911  PGSMQAALEHLRDMKHARRRVAVLGEMAELGPEAPMLHADLAAVVERCGI---------D 961

Query: 425  PEKIRAEIIHGIPGFIEKGNR------IEAIRTAI-EMLNKQDVLVVAG 466
               +  E+  G    +    R      ++ +++A+ E L  +DV+++ G
Sbjct: 962  RVYVMGELYTGFWEQLPAARRGRHTNSLDELKSALSEELADEDVVLLKG 1010


>gi|56964532|ref|YP_176263.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16]
 gi|59798127|sp|Q5WEA8|MURC_BACSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56910775|dbj|BAD65302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16]
          Length = 435

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 128/407 (31%), Gaps = 50/407 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS+AY               L VD   +FL  F  +         +AV+G+ GK+S  
Sbjct: 64  VIVSAAYGETHEEIKRARELG-LKVDVYPEFLGSFIKQF------TSIAVSGSHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG   T    A        +  Y    L+Y              
Sbjct: 117 GLLAHVLGSVEPTSYLIG-DGTGKGAANSTYFVFEACEYRRHFLNY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY ++ +   +A   + +++       I   DD
Sbjct: 162 ------------SPDYCVMTNIDFDHPDYFKSVEDVVSAFQTMAKQV---NKAIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
            + + +     N       +G    F   K +            V G  F  F+ P  G+
Sbjct: 207 EHLQTLQA---NVPIVYYGLGDHNDFQ-AKSIKNTPEGTAFDAWVRGDLFGSFVIPGFGD 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC   GI    ++EHL+    V  RF    +  +   +  DYAH    +
Sbjct: 263 HNVKNALSVIALCHYEGIGYEDIVEHLKTFAGVKRRFSEKRSGKQ--ILIDDYAHHPTEI 320

Query: 370 EMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEK 427
              ++   +      +  +F                 AL  AD   + D      E+   
Sbjct: 321 AATIEATKKKYHDREVTAIFQPHTFTRTKTFLNEFAEALSQADHVYLCDIFGSAREEQGS 380

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ETVH 473
           +  E +  +    +     E I T         VL+  G G  +   
Sbjct: 381 LSIEQLQALVDGAKLLTEAE-IETLKGHGES--VLLFMGAGDIQKYQ 424


>gi|288925521|ref|ZP_06419454.1| UDP-N-acetylmuramate--alanine ligase [Prevotella buccae D17]
 gi|288337737|gb|EFC76090.1| UDP-N-acetylmuramate--alanine ligase [Prevotella buccae D17]
          Length = 458

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 139/419 (33%), Gaps = 47/419 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP A  + A  +VV +     D             ++   + L        G      L 
Sbjct: 63  IPHACKKPASTLVVYTPAIPADHKELTFFREGGFEIEKRAQVLGTLTRTHKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++ ++    I  +S            +   +++               +Y+ S
Sbjct: 117 VAGTHGKTTTSTMCAHIMHQSQQDCNAF-----LGGISKNYGT------------NYILS 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V +EA       H L   +      T+   DH+D + T++AY  +  R + EL+ 
Sbjct: 160 DKSDFVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTELIQ 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I++ +    + V +     G RV          H + +   + +         + 
Sbjct: 216 PGGALILHKNLEMQQHVQE-----GVRVYEYSLDEGDFHAENIKIENGEITFDFISPVEC 270

Query: 300 FD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               +   P    + N + A  +    G  +  +   ++    V  RF+F   N R    
Sbjct: 271 VRNVMLGQPVPINIENGVAAMAMAQLNGCTAEELRYGMKTYAGVDRRFDFKIKNDRH-VF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DYAH    +    K+IR +   R I  +F                 +L L D  I+ D
Sbjct: 330 LSDYAHHPKEIYQSAKSIRELYKDRKITAIFQPHLYTRTRDFYQDFANSLSLLDEVILCD 389

Query: 418 DNPRSEDPEK------IRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             P  E P +      I   +  G+    I K + ++ ++         DVL+V G G 
Sbjct: 390 IYPAREKPIEGVTSKLIYDNLKPGVEKSMIHKEDVLDLVK-----SRDFDVLLVLGAGD 443


>gi|269137993|ref|YP_003294693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|267983653|gb|ACY83482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|304558040|gb|ADM40704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Edwardsiella tarda
           FL6-60]
          Length = 438

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S    L   +    +   + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIPLSSPALDRAAQAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                        ALS L  +      +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGV-------------------PALSLLKHE-CRLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH++ +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYEN----ARTCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +    H A  R +S G      HL +      + ++ + V G+        
Sbjct: 212 NADDALTMPI----HGADTRCVSFGVDVGDYHLNR-----QQGEIWLRVRGEKILNTKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+G+  A  L  L     +  RF+ V  +S    I    A 
Sbjct: 263 QLTGMHNYTNALAALALADAVGLPRASSLRALTTFRGLAHRFQLVLEHSGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  LK +     G + ++   G  +D    P++  +  D   +     D   +E 
Sbjct: 323 NVGSTEAALKGL--HLDGTLHLLL-GGDGKDADFTPLLPYLQGDRIRLYCFGRD---AEP 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +AIR    +    D++++
Sbjct: 377 LMRLRPEVSRRFDTL------EQAIRALAPLTRGGDMVLL 410


>gi|322375569|ref|ZP_08050081.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C300]
 gi|321279277|gb|EFX56318.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C300]
          Length = 444

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 108/352 (30%), Gaps = 43/352 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG   I+  +A+   +      ++   +      +FL  F            + V G  G
Sbjct: 60  QGDVEIIAGNAFRPDNNVEIAYADQNGISYKRYHEFLGSFMRDFV------SMGVAGAHG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S    +  +      +SF IG  +   S      +                       
Sbjct: 114 KTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD------------------- 154

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E   H +  H            TN+  DH DY  + +  FNA     +++        
Sbjct: 155 --EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLF 203

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           +Y +DA   E+ K   NA         +G       +         T+   G++   F  
Sbjct: 204 VYGEDA---ELRKITANAPIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRGQELGQFHI 260

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G   + NA    GL    G D  LV EHL+    V  RF     N     I  D+AH
Sbjct: 261 PTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--TVIIDDFAH 318

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +   L   R    S  I+ +F                 AL+ AD   +
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|91776623|ref|YP_546379.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
 gi|118595665|sp|Q1GYZ9|MURD_METFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91710610|gb|ABE50538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
          Length = 453

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 171/459 (37%), Gaps = 62/459 (13%)

Query: 15  INQLSIFPMQWRERKINEVS-SDSRHIQAG-WI----FVAIVGNKEDGHLFIPQAIAQGA 68
           +    +  ++W  R+   +S +DSR +  G       F    G       F   A  + A
Sbjct: 14  LGDTGLSALRWLARQGARLSVADSRALPPGLDAVRQEF---PGMAIHLGPFTAAAFKE-A 69

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           E IV S    + +          + VV +   F    ++         ++A+TG +GKS+
Sbjct: 70  ELIVASPGVPVAEPQVQAAIERGVPVVGDVELFAQARSAH------AKVIAITGANGKST 123

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V + V +IC+ +G  +   G                         +  + +  V    +E
Sbjct: 124 VTTLVGEICKAAGFKTVVAGNIGL--------------------PVLDVINDAVDVYVLE 163

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L+      +   A +  N+  DH+D +   QAY NAK R+F          ++ A
Sbjct: 164 LSSFQLE--TTYSLAADAATVLNISADHMDRYADMQAYANAKARIFTR----AGLQVLNA 217

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPL 306
           DDA+S+ +           L+ G        +    +H+  +  ++   +    +    +
Sbjct: 218 DDAWSRGMAAEGVAQ----LTFGLDAP-RSAQDFGLLHDAGEAWLARGQRKLMPVADLNI 272

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NAL A  LC  + ID  + L+ L     +P R ++V  +  G   Y D   T+
Sbjct: 273 TGLHNAANALAALALCTVLDIDEVVALQALRDFKGLPHRVQWV-ADIDGVSFYDDSKGTN 331

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +   +  +  +   R +V+   G  + Q    +   +A     + ++  D        
Sbjct: 332 --VGATVAALHGL--NRKLVLIAGGDGKGQDFAALRAPVAKHARAVVLIGRD-------A 380

Query: 427 KIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
            + A+ +      +E G+   EA+  A  + ++ D +++
Sbjct: 381 GVIADALQESGVLLEYGDTLEEAVVKAFNLADRGDAVLL 419


>gi|59712810|ref|YP_205586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           fischeri ES114]
 gi|59480911|gb|AAW86698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Vibrio fischeri
           ES114]
          Length = 404

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 152/403 (37%), Gaps = 68/403 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L         +  I +V +      LFA  +       ++A+TG++GKS
Sbjct: 33  ADLIVTNPGIALASPQLKPAIDKGIKIVGDIE----LFAWAVN----APVIAITGSNGKS 84

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V     ++ + +G+ +   G                        AL  L  Q      +
Sbjct: 85  TVTDLTGEMAKAAGVKTAVGGNIG-------------------FAALDLL-EQDAELYVL 124

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+FE         I+ 
Sbjct: 125 ELSSFQLE--TTSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEH----AEVCIVN 178

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD       +   +    + S G+        +   I    + T+ +   +      L 
Sbjct: 179 RDDK------QTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKNTVPLLAAN---ELGLV 229

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N+LVA  L  A GI+    L+ L   + +  R + V  N  G R   D   T+ 
Sbjct: 230 GKHNIANSLVAIALLDAAGINLDATLDTLRTYNGLTHRCQVVADN-NGIRWVNDSKATNV 288

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT------DDNPR 421
           +  +   +   +     ++V G G   D        +++  L D+ ++        D   
Sbjct: 289 ASTLAALSGLQLEGKLHLLVGGVGKGADFS------ELSPALHDLNLMMYCFGEDGDQFV 342

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           S DP  +  E ++            EAI T    LNK D++++
Sbjct: 343 SLDPRSLLCETMN------------EAIATLYPTLNKGDMVML 373


>gi|295696465|ref|YP_003589703.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
 gi|295412067|gb|ADG06559.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
          Length = 454

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 136/408 (33%), Gaps = 45/408 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTP------ILVVDNTRK---FLSLFASRLYGKHPENI 117
           GA  +V     SL D         P        V +  R+    ++        + PEN 
Sbjct: 55  GARLVVGGHPESLFDQPWDEVVKNPGVPYSAHPVAEAIRRGIPVVTELEVAWRIR-PENW 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT+GK++  S+V  + + +G+     G    I     D      S  +L   LS  
Sbjct: 114 LGITGTNGKTTTTSWVGHMLEVAGVPHRVAG---NIGVPLCDVVEAIDSEEWLVAELSSF 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG                     +   G+  N+   H+DYH   +AY  AK  +F   
Sbjct: 171 QLQG-----------------TLRFRPHIGAILNIYPAHLDYHGGLEAYAAAKKNMFVNQ 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P++  A++        ++M        R       G      +   +            
Sbjct: 214 GPED-YAVLNGGRKDEHQLMAGVRARPARFGGPRRPGVPGMAVEGDRVLWWDGFRAEPVC 272

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    LPGE  + N L A  L +  G   + V         V  R EFV    +G  
Sbjct: 273 AVGDV--ALPGEHNLENFLAAGTLAVLAGASLSAVATSGRTFRGVEHRMEFVRQW-QGVT 329

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y D   T+   E   + +       I +    G DR    R ++  +        +   
Sbjct: 330 FYNDSKATNP--EAAFRALGAFPKNVIWI--AGGLDRGDDYRRLLPLLQEGRVKTVLTMG 385

Query: 418 DN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + PR      +  E+  GIP      +  EA+R A+ +    DV+++
Sbjct: 386 QSGPR---IAALAQEV--GIP-VRRVADVEEAVRIAVSLARGGDVVLL 427


>gi|258625793|ref|ZP_05720672.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
 gi|258582031|gb|EEW06901.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
          Length = 451

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 114/363 (31%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ +S V  + +  G     +     + +F    R        L +
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLEHCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V KR           G QG++   K         Q  
Sbjct: 207 LV-RTVPGNGRILAPKQDEALADVFKR--GCWSETEFSGEQGEWQAEKITAD---GSQFH 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + + G+      + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R     + I+            G        +L  
Sbjct: 320 EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I     E+        +   N  E +    +     D ++V 
Sbjct: 380 ADTVYLYQ-------PSNIPWSVEEVAKQCAQPAQVSANMDEFVAMIAKEAKVGDQILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|87301212|ref|ZP_01084053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 5701]
 gi|87284180|gb|EAQ76133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 5701]
          Length = 463

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 130/381 (34%), Gaps = 36/381 (9%)

Query: 82  FSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  IR + P+L     R  +     +      +    + +TGT+GK++V   +  I   
Sbjct: 80  VSPGIRWDHPVLKALRERGVRVCGEMSVAWEASNEIPWIGITGTNGKTTVTHLLSHILNH 139

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +GL +  +G                 S   L        +     + VE SS+ ++    
Sbjct: 140 AGLDAPMVGNVGI-------------SAAELLIERREAGATPPDWLVVELSSYQIESS-- 184

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G +T L  DH++ H T +AY   K      LL      ++ ADDA   ++   
Sbjct: 185 AELAPRLGLWTTLTPDHLERHGTLEAYRAIK----RSLLQNCGEQLLNADDA---DLRAH 237

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVA 318
           A +            + +       +     + ++  G  F      LPG     N ++A
Sbjct: 238 AGSWDRATWVTAGTRRLLGAGLQPFLWIDGGMVMAASGPLFSAAALALPGAHNRQNMVLA 297

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A   + +G++ A++   L     VP R E +             A   ++ E+ +  +  
Sbjct: 298 AATALKLGLEPAVIEAALRSFPGVPHRLEQIRLLDGVRWFNDSKATNYDAAEVGITAVD- 356

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                 +VV   G  +       +  +    A + +        E    + +    G  G
Sbjct: 357 ----GPMVVLAGGEIKQGDPEAWLEALGRQAAAVVLFGA---AREAFAALLSG--SGYAG 407

Query: 439 FIE-KGNRIEAIRTAIEMLNK 458
            +E    + EA+  A E+  +
Sbjct: 408 TVELVEGQAEAVPLARELARR 428


>gi|254450940|ref|ZP_05064377.1| mur ligase family protein [Octadecabacter antarcticus 238]
 gi|198265346|gb|EDY89616.1| mur ligase family protein [Octadecabacter antarcticus 238]
          Length = 556

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 137/399 (34%), Gaps = 43/399 (10%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V +        A      H   +  VTGT+GKS+       I   +G     +G +++ 
Sbjct: 136 KVYDIADLPDPDAVDWDSLHDVPVGMVTGTNGKSTTVRLTAAIGAAAGK---CVGMSTSD 192

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                   L        A A   L    V    +E +  GL +  L      A   TN+ 
Sbjct: 193 WVRVGGEILDEGDYSGPAGARLALRDPRVDLAIIETARGGLMRRGLPVPTADACLLTNVA 252

Query: 214 RDHIDYHQTQQ--AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            DH+  +      A  +AK +L + + P     I+ ADD    E++KRA      +   G
Sbjct: 253 ADHLGTYGIMDVTALADAKFQLSDAIRP-GGLLILNADDP---ELVKRAAQFSGDITWFG 308

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGK----------------DFDFLFPLPGEFQVYNA 315
            +  F        I    +V    +G+                DF        +F VYNA
Sbjct: 309 LE--FDRAILDIWIMGGGRVAFVEDGQMVLARNGIVEPVLAVADFVPALGGAAKFNVYNA 366

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPG----RFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           L A  L  A+ +    + + L      P     R  +V     G  + +D+AH  + +  
Sbjct: 367 LGAICLADALELPINAMAKGLAGFTDTPDENPGRGNYVKVG--GLNLLIDFAHNPHGVHA 424

Query: 372 ILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKI 428
           +   I++I + R +V+    G   D+    ++  I     D+ +V +  D  R     ++
Sbjct: 425 LSSAIKSIPAKRRLVIAGQAGDRSDKDTCDMIQAIWTFEPDMVVVAELPDLLRGRQLGEM 484

Query: 429 RAEII-------HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
              ++        G    I       A+  A+E     D
Sbjct: 485 TTVMVDELKRLGSGHDNIITTDTEYSAVVRAMEWARPGD 523


>gi|149186204|ref|ZP_01864518.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           SD-21]
 gi|148830235|gb|EDL48672.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           SD-21]
          Length = 429

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 63/430 (14%), Positives = 128/430 (29%), Gaps = 69/430 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSN---TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G   +VVS    L        ++    P++   +      LFA       P  ++ +TGT
Sbjct: 64  GYAGVVVSPGVPLNTHPIKPHADSFGVPVI--SDIE----LFAQARADLPPHKVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + V  I + +G+ +   G                         L         
Sbjct: 118 NGKSTTTALVHHILETAGVPTTMGGNIGL-------------------PILEQEPLPEGG 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKES 242
              +E SS+ +D      +        N+  DH+D +    + Y  +K+RLFE    + +
Sbjct: 159 VYVLELSSYQIDL--TYSLDCDVAVLLNITPDHLDRYDGNFEKYQASKLRLFEMQASQHA 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                           R  +    V    +  +            +   T+         
Sbjct: 217 AVTENVH---------RYPDDPTDVWGP-WDSEDRARDARPLGSQRDWPTLQGP------ 260

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                      NA  A  +   + +    V   L     +P R E +   +  G  YV+ 
Sbjct: 261 -------HNGQNAFAAIEVAYELELSEEAVSRALRTFPGLPHRMERIAEIA--GVAYVND 311

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  +N+                 +V   G  ++ G      ++ L  A   I        
Sbjct: 312 SKGTNTAASAPALAAFH--NIHWIV--GGLAKEPGLGECEAELGLVKAAYTI-------- 359

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
                  A ++ G     +  +   A+ +A       D ++++     +     + EK+ 
Sbjct: 360 GKAGPDFAALLDGRVPVEQCESLDRAVTSAAAKAEAGDTVLLS-PACASFDQYADFEKRG 418

Query: 483 SVDCDIIREI 492
               +++  +
Sbjct: 419 DHFRELVERL 428


>gi|251797876|ref|YP_003012607.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
 gi|247545502|gb|ACT02521.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
          Length = 473

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 121/366 (33%), Gaps = 47/366 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  +++ ++   +GL+    G                         L
Sbjct: 112 APIIGITGSNGKTTTTTWIGKLLGEAGLNPIVAGNIGI--------------------PL 151

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +++      + A             +       N+   H+DYH   + Y  +K +LF
Sbjct: 152 CEAAAEATKDNWIVAELSSFQLKGTSSFRPRIALLLNIAETHLDYHGGMEDYVASKAKLF 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNKQ 289
                 +  A++  DDA  + +  +                G   +    +   +     
Sbjct: 212 ANQT-ADDVAVLNWDDATCRAIADQLAAKLLPFSLYVRLDQGICIEPPFERGKDSDKEHM 270

Query: 290 QVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            V    +G +   L      LPG     NAL A   C+A G+    +L  L+    V  R
Sbjct: 271 IVWRKEDGTEQAILPVSALGLPGRHNAGNALAAIAACLAAGVAPEAMLPALQGFRGVEHR 330

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E+ G     G  Y + +  +N +   +        G  I++   G DR      ++   
Sbjct: 331 LEYAGE--FNGVNYYNDSKATNPMATTMSVGSL---GAPIILIAGGLDRGSDYMELLPVF 385

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIE-----AIRTAIEMLNK 458
              L  +  +       E   K+    + G+     +E     E     A+R A  +   
Sbjct: 386 RDRLKGLVTLGQ---TREKLGKVAE--LAGLTNVRLVEPEEDAESTLRRAVREAAGLAEP 440

Query: 459 QDVLVV 464
            D++++
Sbjct: 441 GDIVLL 446


>gi|160946328|ref|ZP_02093537.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
 gi|158447444|gb|EDP24439.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
          Length = 441

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 115/296 (38%), Gaps = 22/296 (7%)

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +       +S   T   +E SS  L  H ++  K    S  N+  DHID+H +   Y  
Sbjct: 141 GIGMLWEIFNSDDETVNIIEVSSFQL--HNIENFKPYIASIGNITPDHIDWHGSFDNYIE 198

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K+++F+  + K    I+  DD    ++     N     +S+  +    +L +    HN 
Sbjct: 199 DKLKIFKN-MDKNGNLILNIDDEILGKI--NVENTNVTKISLNNKNADFYLSENNFYHND 255

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +++  S++         + G+    N L++  +C   GI    ++   +    V  R EF
Sbjct: 256 KKL-FSMKD------LKILGKHNAQNVLISLAICYNYGIIMDTIIFACKNFGGVEHRIEF 308

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V     G + Y D   T+  ++  +K I  +    I++V   G D++    P+       
Sbjct: 309 V-RELNGIKFYNDSKGTN--VDSTIKAIEALEKPIILIV--GGYDKNVDFNPLFESFNGK 363

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  + +V D   +  D  K      +G    I   +  E +    E+    D +++
Sbjct: 364 VKTLILVGDTKYKFYDSAK-----KNGFENNIIVNDYREVVEKCFEIAESGDNVLL 414


>gi|294142806|ref|YP_003558784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
 gi|293329275|dbj|BAJ04006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
          Length = 451

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 139/398 (34%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S   ++         +  I V+ +      LFA  +  + P  ++ +TG++GKS
Sbjct: 69  ASQIVISPGIAIDTPEIRAAIDMDIEVIGDVE----LFARAIKDRSP-CVIGITGSNGKS 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +GL+    G                         +  L  + V    +
Sbjct: 124 TVTTLVGEMAKAAGLNYAVGGNIGI--------------------PVLDLLQKPVDLYIL 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I+ +  N+  DH+D +   +AY  AK+ L+++       A+  
Sbjct: 164 ELSSFQLE--TTHSLNCISATCLNISEDHMDRYSDLEAYRQAKLALYDQ----SKRALFN 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D+ ++       N      S G          V         T     +D   +    
Sbjct: 218 REDSLTQ------PNDPMNQNSFGLTSPVNDEWGVKDGKIVHGTTEIASLQDVAIV---- 267

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  L    GID   +++  +    +  R E V   +    +    A    
Sbjct: 268 GSHNHANLIAAMALAYHAGIDKEPMIQVAKNFTGLAHRCELVANIAAVAYVNDSKATNVG 327

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+ +       I++V G G   D         +   +A +  +  D         
Sbjct: 328 ATVAALEGLGEHLGDIILIVGGDGKGADFTPLE---TVFNKVAHLITLGKD--------- 375

Query: 428 IRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
              + I  +     K +   +A++ A E+    D++++
Sbjct: 376 --GDKIAALKEHSHKADSMADAVKQAAELATAGDIVLL 411


>gi|260899193|ref|ZP_05907588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107131|gb|EFO44671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 437

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 150/405 (37%), Gaps = 72/405 (17%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V +   +L   +    +   TP  VV +      LFA  +     + ++A+TG++G
Sbjct: 69  ADLVVTNPGIALATPEIQTVLAKGTP--VVGDIE----LFAWAVN----KPVVAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL+    G     +                      L  Q V   
Sbjct: 119 KSTVTDLTGVMAKAAGLTVGVGGNIGVPA--------------------LELLEQDVDLY 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F+        A+
Sbjct: 159 VLELSSFQLETTL--SLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDH----AELAV 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFD 301
           +  DD       +        V++ G   +   L+    +   + + Q+V  S E     
Sbjct: 213 VNRDDQ------ETYPEVEMPVVTFGSDEQAYGLEVDGSRTWLLDHGQRVIASDE----- 261

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+  + NALV   L  A G+D    L  L+    +  R + V  N RG +   D
Sbjct: 262 --LKLVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-RGVKWVND 318

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTDDN- 419
              T+ +  M   +    T    ++V G G   D    +PI   + L L    +  DD  
Sbjct: 319 SKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGLDGDDFM 378

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P  E                I      + I+     L   D++++
Sbjct: 379 PLHE--------------SAIRFNTMEDVIQQISSQLKSGDMVML 409


>gi|261367207|ref|ZP_05980090.1| UDP-N-acetylmuramate--alanine ligase [Subdoligranulum variabile DSM
           15176]
 gi|282570805|gb|EFB76340.1| UDP-N-acetylmuramate--alanine ligase [Subdoligranulum variabile DSM
           15176]
          Length = 456

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 87/268 (32%), Gaps = 13/268 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +    G   N+  DH++Y+ T      A    F++        +   DD  + +V+   
Sbjct: 180 HLTCAVGVILNIDNDHLEYYGTMGQLKLA----FQKFALLSRTVVFNMDDHNTVDVVNSI 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDF-DFLFPLPGEFQVYNALV 317
                 VLS G            A +        V   G++F      +PG   +YNAL 
Sbjct: 236 DRP---VLSFGITEDARFRAVNVAEYKPGFYEFDVLELGENFAHIRLGVPGYHNIYNALA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                  +G+     +   E  H    RFE  G    G  I  DYAH    LE  LK  +
Sbjct: 293 MCCCVRPLGLKPEDAVRAAEAFHGTGRRFEIKG-ECNGAVIVDDYAHHPTELEATLKTAK 351

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR--AEIIHG 435
            +   R+I V                   L  A+  ++       E  +      ++   
Sbjct: 352 GLGYQRVIAVHQPFTYSRTKMLMDDFVKVLGEANQVVLLPIMGGREADDGTVSSEQLAAK 411

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           IPG +       A     +   K D++V
Sbjct: 412 IPGSVVVDGLEGAADWVKQNAGKGDLVV 439


>gi|332704503|ref|ZP_08424591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554652|gb|EGJ51696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 435

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 126/400 (31%), Gaps = 71/400 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G + +VVS    ++     +  + P   V +  +     AS       E ILAVTGT+G
Sbjct: 72  AGVDLVVVSPGVPVRKM-GHLLGDMPERKVVSELE----LASWFV---SEPILAVTGTNG 123

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    I + SG   F  G   T  S                     L  +    +
Sbjct: 124 KTTTVSLCGHILRESGKRVFVGGNIGTPLSEY------------------LLGGERADIL 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPA 244
            +E SS  L   R    K   G   N   +H+DYH++ + Y  AK++LF     ++ + A
Sbjct: 166 VLEVSSFQLQNCRT--FKPHVGVLLNFSANHLDYHESMEEYLEAKLKLFARQTEQDLAIA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            +   D        +A      V S  ++G                              
Sbjct: 224 PLNMKDELEARGFTKAKRVYY-VPSNRFEGA----------------------------- 253

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N   A   C A G+        +     +  R E V     GG ++VD + 
Sbjct: 254 RLLGVHNKANMEAAWLACRAFGVSDDQARAAVMSFKPLSHRIEPVIET--GGVLFVDDSK 311

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            + +++ +   I          +   G  +      ++  +   +  + +          
Sbjct: 312 -ATTIDAMAAAITAFDRPVR--LLAGGVWKGGDVAALVPLLKDRVKSVGLFG-------K 361

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++      G      +     A++         DV+++
Sbjct: 362 AREVFEGAWQGHVPLFWEPTLEPAVKRLYAEAQPGDVILL 401


>gi|30316124|sp|Q9F1N2|MURD_SHEVD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|11761333|dbj|BAB19200.1| MurD [Shewanella violacea]
          Length = 449

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 139/398 (34%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S   ++         +  I V+ +      LFA  +  + P  ++ +TG++GKS
Sbjct: 67  ASQIVISPGIAIDTPEIRAAIDMDIEVIGDVE----LFARAIKDRSP-CVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +GL+    G                         +  L  + V    +
Sbjct: 122 TVTTLVGEMAKAAGLNYAVGGNIGI--------------------PVLDLLQKPVDLYIL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I+ +  N+  DH+D +   +AY  AK+ L+++       A+  
Sbjct: 162 ELSSFQLE--TTHSLNCISATCLNISEDHMDRYSDLEAYRQAKLALYDQ----SKRALFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D+ ++       N      S G          V         T     +D   +    
Sbjct: 216 REDSLTQ------PNDPMNQNSFGLTSPVNDEWGVKDGKIVHGTTEIASLQDVAIV---- 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  L    GID   +++  +    +  R E V   +    +    A    
Sbjct: 266 GSHNHANLIAAMALAYHAGIDKEPMIQVAKNFTGLAHRCELVANIAAVAYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+ +       I++V G G   D         +   +A +  +  D         
Sbjct: 326 ATVAALEGLGEHLGDIILIVGGDGKGADFTPLE---TVFNKVAHLITLGKD--------- 373

Query: 428 IRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
              + I  +     K +   +A++ A E+    D++++
Sbjct: 374 --GDKIAALKEHSHKADSMADAVKQAAELATAGDIVLL 409


>gi|95930733|ref|ZP_01313466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133213|gb|EAT14879.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 448

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 152/449 (33%), Gaps = 75/449 (16%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGK 112
           GH     A+ Q A+ IVVS    L     +  I    P+   V+                
Sbjct: 59  GHD---DAVFQQADLIVVSPGVPLTVPVLAKAIDRGIPVWGEVE-----------YASRH 104

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++A+TGT+GKS+    V Q+ +  G   F  G                        
Sbjct: 105 LTAPVIAITGTNGKSTTTELVGQMLRGCGKRVFVGGNIGV-------------------- 144

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L   + Q V +V VE SS  L+   +D +        N+  DH+D +    AY  AK  
Sbjct: 145 PLIEAAGQDVDYVVVELSSFQLE--TIDQLHPRYALMLNVSVDHLDRYPDMAAYVAAKKA 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +F      +  A++  +D     ++    +   R  S         L +      +  + 
Sbjct: 203 IFANQT-ADDIAVLNGEDELVMAMVPGIDSRPVRFSS-------QRLLEQGISFTQGTIH 254

Query: 293 ISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +G+   F      L G   + N + A    +  G D     +   +   +P R   V
Sbjct: 255 WCNKGEQCCFNTDELMLSGLHNIENVMAALVPVLLEGCDPEQAWQAACRFTGLPHRMVLV 314

Query: 350 GTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T   G R Y D   T+  S+E  +  +        + +   G D+    R I   +   
Sbjct: 315 RT-LNGVRWYNDSKGTNLGSVEKSVGGLSA-----PVTLIAGGKDKGGDYRDIRSALQGR 368

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-----NKQDVLV 463
           +  + ++              A+++    G +    R E++  A+++      +   V++
Sbjct: 369 VTALVLIGQ-----------AADLMEQAWGDLCPIYRAESMEQAVDVAHKVTPSPGQVVL 417

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               G  +  +  + E++     + +R +
Sbjct: 418 --SPGCSSFDMFKSFEERGERFSEAVRAL 444


>gi|238792997|ref|ZP_04636626.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia intermedia ATCC 29909]
 gi|238727597|gb|EEQ19122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia intermedia ATCC 29909]
          Length = 461

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 121/363 (33%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  V  I +  G     +     +      +     SP ++ +
Sbjct: 101 PGRWVLAVAGTHGKTTTAGMVTWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLVMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P     I+  +D + K+VM  A         VG  G +   +KV    +  +V 
Sbjct: 207 LV-RLVPGTGKIIVPDNDNHLKQVM--AMGCWSEQELVGETGSWF-ARKVSTDASVYEVF 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A   + L        R E  G  
Sbjct: 263 LD-NKLVGEVSWSLVGEHNMHNGLMAIAAARHVGVSPADACKALGNFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  +++      I+       I T ++M        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAYWSADIDTLVDMIVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|332829612|gb|EGK02258.1| UDP-N-acetylmuramate-L-alanine ligase [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 457

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 122/359 (33%), Gaps = 30/359 (8%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L   GT GK++ +S +  I ++S L          + ++  +  L+  S   + +A
Sbjct: 109 SSKALCCAGTHGKTTTSSMLAHILKQSHLDCNAF-LGGILKNYGSNLMLSDKSEFTVVEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y  S    H  +                      T++  DH+D + T++ Y  +    
Sbjct: 168 DEYDRSFHWLHPYM-------------------ALITSVDPDHLDIYGTEEEYLKS-FEK 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+      ++  +   S +          R+ +        H + +   + +     
Sbjct: 208 FTSLIQPGGALVMKHNIKLSPK-----TGKDVRIYTYSMDKGDFHAQNIKIGNGEISFDF 262

Query: 294 SVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               +  D     +P +  + N + +  L    G+ +  +   +        RF+F+   
Sbjct: 263 VTPKETIDNIQLGVPVKINIENGIGSMALAWLNGVTAEELRHGMATFMGAKRRFDFLLKT 322

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLAD 411
            +   +  DYAH    L   + +++ +   R +  +F                 +L L D
Sbjct: 323 DK-IVMIDDYAHHPEELAASITSVKELYPNRKLTGIFQPHLYTRTRDFAPEFARSLSLLD 381

Query: 412 IAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+ D  P  E P E + ++II       +     E +   +E  +  +VL+  G G 
Sbjct: 382 ELILLDIYPAREKPIEGVTSKIIFDKVTCPKTLCNKEELLPLLENKDNIEVLLTMGAGD 440


>gi|291563986|emb|CBL42802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [butyrate-producing
           bacterium SS3/4]
          Length = 448

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 103/295 (34%), Gaps = 26/295 (8%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +   +    E SS  L+   +        + TN+  DH+D H+T + Y   K  + 
Sbjct: 148 HALETTDESVTVAEVSSFQLE--TIMDFHPNVSAITNITPDHLDRHKTMECYIQVKEGIT 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +++  + Y D      + +      C+VL    + K           +   +   
Sbjct: 206 RNQTEEDTCVLNYEDPV----LREFGKTLKCKVLYFSSKEKL----DEGIFMDGDFIVYR 257

Query: 295 VEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +GK+   L      + G     N + A  + I +G+   ++ E   +   V  R E+V 
Sbjct: 258 HDGKNEKVLDVNELNIIGRHNHENVMTAVAIAIHLGVPMDMIREACREFKAVEHRIEYV- 316

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              R G  Y + +  +N  +  ++ I+ +    +++  G     +  +        +   
Sbjct: 317 -RERFGVTYYNDSKGTNP-DAAIQAIKAMPGPTLLIAGGYDKHSEYDEWIENFDGKVRYL 374

Query: 411 DIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +          +  +KI      HGI   +   +  EA++      N  D +++
Sbjct: 375 VLI--------GQTRDKIAECAKKHGITDIMYAEDMQEAVQVCASYANAGDYVLL 421


>gi|237729389|ref|ZP_04559870.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter sp. 30_2]
 gi|226909118|gb|EEH95036.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter sp. 30_2]
          Length = 491

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 143/434 (32%), Gaps = 61/434 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         +++D S  + S     + P +V  +  +        + A  +  +H   
Sbjct: 64  GATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I   +GL    +      ++        +         ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHS------RYLIAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
                 + +                ++ +    TN+  DH+D YH   +         F 
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFL 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
             LP    A++  DD   +E++ R      +  + G+     + ++    I  +   T+ 
Sbjct: 219 HNLPFYGRAVMCVDDPVIRELLPRVGR---QTTTYGFSDDADVRVEDYQQIGPQGHFTLL 275

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
            +G  D       PG     NA  A  +    GI+   +L  LE       RF+F+G   
Sbjct: 276 RQGMADLRVTLNAPGRHNALNAAAAVAVATEEGIEDDAILRALESFQGTGRRFDFLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R       ++++F                
Sbjct: 336 LEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK- 458
             L   D  ++ D     E    I       +   I    +I+ I         +ML   
Sbjct: 396 NVLTQVDALLMLDVYAAGE--AAIPGADSRSLCRTIRGRGKIDPILVSDPAQVADMLAPV 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LTGNDLILVQGAGN 467


>gi|258516477|ref|YP_003192699.1| FolC bifunctional protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780182|gb|ACV64076.1| FolC bifunctional protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 429

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 136/389 (34%), Gaps = 51/389 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +GL                  I+             
Sbjct: 40  KAIHIGGTNGKGSTTAMLSAVLKEAGLRVGMFTSPHLHSYTERYRINGEPVGQERIAKMI 99

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLD---------------------QHRLDGIKLIA 206
             L   L  +  +G  H +   +   +                          + I  + 
Sbjct: 100 TRLRPHLEDMVREGFEHPTEFEAGTAMAFLYFAEEKVDLLLLEVGLGGAIDSTNVITPVV 159

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              TN+  DH+DY   T Q     K  + +  +P  + A     +  + ++++ A     
Sbjct: 160 SVLTNIAMDHMDYLGNTIQEITAVKTGIIKSGIPVVTSAK----NPEALKIIEAACREKA 215

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA 324
             L+V   G  + +++       Q+ +I  +   + D   PL G  Q+ NA     +   
Sbjct: 216 AQLTV--VGNQVTVEQKEFSTAGQKFSIFTDSNHYEDLTLPLLGRHQITNAAGVVAVIEV 273

Query: 325 IG-----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378
           +      I    V   L K      R E +    +   + +D AH  + ++ + + +   
Sbjct: 274 LQQLGYTIPKEAVHSGLAKTDWP-ARLEIM---RQKPTVLIDAAHNLDGVQSLKQALLDY 329

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIP 437
             S ++ +V G  GD++   R  +      LA+  ++T  N PR+ D E +  E      
Sbjct: 330 FPSKKVTLVLGMLGDKE---RSKVVAELTPLAEAVVITKPNSPRAGDWELLADEARRFTD 386

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 N  EA+  A+ M  ++D++ + G
Sbjct: 387 KVTLIENITEAVDAAMSMAGEEDLVCITG 415


>gi|223938694|ref|ZP_03630584.1| UDP-N-acetylmuramate [bacterium Ellin514]
 gi|223892682|gb|EEF59153.1| UDP-N-acetylmuramate [bacterium Ellin514]
          Length = 443

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 88/276 (31%), Gaps = 21/276 (7%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  NL  DH D  +       A  R F  L+P+    I   DD     ++   H  
Sbjct: 159 PEVAIINNLEFDHADIFENLGTIQTAFKR-FINLVPRNGQLIANGDDPNLAPLLNVTH-- 215

Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            C V   G+ +        +       +  I      F F   L GE  V NAL      
Sbjct: 216 -CPVKRFGFGEENAWRAMNLNLAPTVSEFEI----PSFKFRIGLLGELNVRNALAVVACA 270

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G+ +  +    +    +  R E  G +  G  +  D+ H   ++   LK +R    G
Sbjct: 271 KHCGLKNHEIQSAFDTFKGIKRRMEVRGVSG-GVTVVDDFGHHPTAIRETLKALRIKFKG 329

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSE--------DPEKIRAEII 433
           + I            +     ++A   AD  A+V     R E        DPE++  EI 
Sbjct: 330 QKIWAIFEPRTNTTRRNVFQTELADSFADADAVVVSQIARLELLKPEERLDPERLMQEIK 389

Query: 434 HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
                     +  +AI     +     +V+ V   G
Sbjct: 390 SKGKTAEYLLD-ADAIVEHVCKHAQGGEVICVFSNG 424


>gi|114564396|ref|YP_751910.1| UDP-N-acetylmuramate [Shewanella frigidimarina NCIMB 400]
 gi|114335689|gb|ABI73071.1| UDP-N-acetylmuramate [Shewanella frigidimarina NCIMB 400]
          Length = 479

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 127/382 (33%), Gaps = 47/382 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK+S +S +  + +  G     +     +      +     S  ++ +
Sbjct: 105 QDRWVLAVAGTHGKTSTSSMLAWVLEYCGYEPGFL--IGGVPQNFGVSARLGNSVFFVVE 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A    +  
Sbjct: 163 ADEYDSAFFDKRSKFVHYH------------PRTLVINNLEFDHADIFADLAAIQR-QFN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----------------VGYQGKF 276
                +P E   I  +D    ++V+     +   + S                   QG+ 
Sbjct: 210 HVIRTVPGEGKVIWPSDVEAVQQVIDMGCWSEQEIYSKATSLTTGLAEHSVNVSANQGEP 269

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              +      +  +  +  +G+    + + L G+  + NA++A      +G+  +  +E 
Sbjct: 270 NAWQPRTIADDGHEFEVLFKGESQGIVNWSLIGQHNIENAIMAIAAARHVGVAPSHAIEA 329

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK------NIRTITSGRIIVVFG 389
           L +      R E + T   G  +Y D+AH   ++   L+            +G IIVV  
Sbjct: 330 LAQFSPPKRRLELLAT-VNGVSVYDDFAHHPTAIATTLQGLRAKVASSDNANGNIIVVLE 388

Query: 390 CG-GDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
                   G        ++ LAD+  +   DN        I+A + +  P  +   N IE
Sbjct: 389 PRSNTMKSGVHKDTLANSMVLADVGYLYQADN----IDWDIKASMAN-APIPVTVFNNIE 443

Query: 448 AIRTAI-EMLNKQDVLVVAGKG 468
            I  A+    N+ D +V+   G
Sbjct: 444 DIINAVAATANQGDTVVIMSNG 465


>gi|308188236|ref|YP_003932367.1| UDP-N-acetylmuramate-alanine ligase [Pantoea vagans C9-1]
 gi|308058746|gb|ADO10918.1| UDP-N-acetylmuramate-alanine ligase [Pantoea vagans C9-1]
          Length = 454

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 118/358 (32%), Gaps = 28/358 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  GL    I     +      +     SP ++ +A 
Sbjct: 107 RWVLAVAGTHGKTTTAGMAAWILEACGLEPGFI--IGGVPGNFDVSAKLGKSPFFVIEAD 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +           S                   NL  DH D     +A       L 
Sbjct: 165 EYDCAFFDKRSKFVHYS------------PRTLILNNLEFDHADIFDDLRAIQKQFHHLV 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   ++   D   K+VM  A        SVG  G++   K     ++     I 
Sbjct: 213 -RIVPGQGKILLPEHDPNLKQVM--AMGCWSEQESVGEHGRWQAKK---LTNDASHWEIW 266

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+   +  + L GE  ++N L+A      +G+      + L        R E  G   
Sbjct: 267 LDGEKVGEVKWALVGEHNMHNGLMAIAAARHVGVKPEDAGQALNTFINARRRLELRG-EV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
              ++Y D+AH   ++   L  +R+   G  RI+ V          G        +L  A
Sbjct: 326 NNIKVYDDFAHHPTAILATLAALRSKVGGRARILAVLEPRSNTMKMGVSKNDLAPSLARA 385

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D   +   +     P ++       IP      +    +    +     D ++V   G
Sbjct: 386 DEVFLFQPH---HIPWQVSDVAEACIPPAHWSADIDTLVEMVAKAAQPGDTILVMSNG 440


>gi|296285056|ref|ZP_06863054.1| hypothetical protein CbatJ_15620 [Citromicrobium bathyomarinum
           JL354]
          Length = 476

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 140/412 (33%), Gaps = 47/412 (11%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           ++V+SA         +R+     P L   +    L   A        E  +AV GTSGKS
Sbjct: 80  VLVASAAVEDTVPEVVRAKELGLPRLTRADLNAALFNAA--------ETGVAVAGTSGKS 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   +  I   +G +   I   + + +F  D+R           A + +    +    V
Sbjct: 132 TVTGMLGWILHHAGKNP-TIMNGAVMKNFVSDDRPF---------ASAVVGDADLYVSEV 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           + S   + Q+     K   G   N+  DH    ++          LF + L     +++ 
Sbjct: 182 DESDGSIAQY-----KPAVGILLNVSLDH----KSMDELRQ----LFGDFLEASDRSVVN 228

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFP 305
           ADD  +  ++  A+      ++ G     I    +     +Q   +    +         
Sbjct: 229 ADDEEAFRLVAHANAPLTFGVTNGCAALGIVEGSIAEGPTRQAAMVHDKRDDSQHALTLN 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL A     A G+  A  +  L +   +  RF+ VGT+S G  +  D+ H 
Sbjct: 289 LPGRHNLSNALAAIAGANAAGVSVADAVAALAEFKGLARRFDIVGTSSSGVTVIDDFGHN 348

Query: 366 SNSLEMILKNIRTITSGRIIVVF----------GCGGDRDQGKRPIMGKIALDLADIAIV 415
                  L+ ++    GR++  F            G   +   R +  +    L D    
Sbjct: 349 PEKAAATLRTLKAH-EGRVLAFFQPHGYGPLKQMGGELAETFARELGPEDISLLCDPVYF 407

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
                RSE  E+I   I       I    R       +      D + + G 
Sbjct: 408 GGTVDRSEGSERIVDLIAKHGGKAIHINTREGCGDWLVANARPGDRIAIMGA 459


>gi|134300391|ref|YP_001113887.1| FolC bifunctional protein [Desulfotomaculum reducens MI-1]
 gi|134053091|gb|ABO51062.1| FolC bifunctional protein [Desulfotomaculum reducens MI-1]
          Length = 431

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 141/399 (35%), Gaps = 46/399 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISS 155
           L        H  NI+ + GT+GK S  + +  I + +G  +                I+ 
Sbjct: 28  LLRRLQNPHHRLNIVHIGGTNGKGSTTAMIANILKTAGYKTGMFTSPHLQDYTERFLING 87

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ------------------- 196
                        Y+   L  +  +G  H +    S  L                     
Sbjct: 88  QPIPQETLASLIQYIRPHLDKMVQEGFEHPTEFEVSTALALLYFAREETDFVALEVGLGG 147

Query: 197 --HRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                + +K      TN+  DH+DY   T     N K  + ++ +P  +     A+    
Sbjct: 148 AIDSTNVVKPKVSVITNIAMDHMDYLGSTLVDIANVKAGIIKQGIPVVTA----AEGEAL 203

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             + +RA     +++ +G +  +   +K       Q+  I+     +    PL GE Q  
Sbjct: 204 GVIRQRALVNNSKLIQIGKEVTWK-PQKNKFKQGFQEFIINGLQNQYYVRLPLLGEHQQV 262

Query: 314 NALVAAGLCIAI------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           NA  A      +       + SA+V+E L  +    GR E +    R     +D AH   
Sbjct: 263 NAASAVAAVELLFTGNGYHLPSAVVIEGLRTVEWP-GRLEII---RRNPTTILDGAHNHA 318

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
               + K + +    + I +F  G   D+ +  ++ ++A     + +   +NPR+ D  K
Sbjct: 319 GAIALKKALESCFPSQKI-IFVLGMLADKERSKVVAELAPLSKAVVVTRSNNPRAGDWRK 377

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   +   I   I   N  EAI  A+  + + ++L + G
Sbjct: 378 LADYVRTYIEDVIVVENVAEAINQALGHVKESEILCITG 416


>gi|268679675|ref|YP_003304106.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617706|gb|ACZ12071.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 476

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 117/312 (37%), Gaps = 34/312 (10%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            +L  +    ++A+T + GK+S+ +F+  I  +           +T++   +D     P 
Sbjct: 147 KKLAQRPSMKVIAITASYGKTSIKNFLASILSKEFNVYHTPRSVNTLAGIVKDINNDLPD 206

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              +     Y+   G       A   G        +         +G  HI+Y +T +  
Sbjct: 207 TCDI-----YIVEAG-------ARMQGDIDEIARCVNPHIAVVGRIGEQHIEYFKTLENI 254

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            N KM +      +++     A                  +LS G +     +K+V A  
Sbjct: 255 RNTKMEMIHSNRLQKAFIHESA-----------QIKETPTILSFGSE-----IKEVKASL 298

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +    ++ +EGK+  F   L G+F   N      +   +G+   ++ E + +L  V  R 
Sbjct: 299 DGLTFSMLLEGKEEHFSASLLGDFNAINLAACVHVARELGMSIEMIQEAMRELKGVEHRL 358

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGK 404
           + +     GG+I +D +   N LE +L +    +   GR ++V     +  +     + +
Sbjct: 359 QKIEA---GGKIIIDDSFNGN-LEGMLSSYELVSHYEGRKVIVTPGIVESTEEANKCLAE 414

Query: 405 IALDLADIAIVT 416
               + D+ I+T
Sbjct: 415 KIDAIFDVVIIT 426


>gi|325294673|ref|YP_004281187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065121|gb|ADY73128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 412

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/388 (17%), Positives = 143/388 (36%), Gaps = 56/388 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R        I+++TGT+GKS+  + + Q+ + +G  +F  G      +F       
Sbjct: 72  ELAYRY---FKGKIISITGTNGKSTTTALIYQVLKEAGYKTFIGG------NFGIPFSSF 122

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                  +  +  LSS  +                L   +       N+  DH++ +++ 
Sbjct: 123 AEETTDDSITVLELSSFQIED--------------LKDFRSSISIILNITPDHMNRYKSF 168

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK++L    L      I+  DD     V++  +       S   +      K   
Sbjct: 169 EEYVKAKLKL----LGHSEFCILNQDDP----VLRNLNRENFFFFSRKRKADAFFEKGKI 220

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                +   I VE      L PL G   V N + A      + + +  +L   +  + +P
Sbjct: 221 ---FCKDFKIEVE------LLPLKGIHNVENYMGALLALKKLKLSNEKILNGFKTFYGLP 271

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   +    I    +   +SL+  L++         I++   G D+      +  
Sbjct: 272 HRTELVAEINGIKFINDSKSTNVDSLKKALESYED------IILIAGGSDKGLDFSSLRK 325

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-EAIRTAIEMLNKQDVL 462
            +   +  I  + +    +E  +K  ++I+      +   + I +A++TA ++ +  DV+
Sbjct: 326 LVRERVKGIVAIGE---TAEQFKKTFSDIVD-----VRISDNIFQAVKTAYKLASSGDVV 377

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +++  G  +  +  N E +     + ++
Sbjct: 378 LLS-PGCASFDMFKNFEDRGEKFREAVK 404


>gi|317010960|gb|ADU84707.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SouthAfrica7]
          Length = 493

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 141/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLHQILQTTFNVHASPKSVNTLLGIASDINQNLEDSSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKDITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               + +         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLENAFC-------YSVEKIKPYAPNNAPLIDYS-----SLVKNIQSTLKGTSFEMLL 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G   +F   + G+F  YN  +A  +   +G+++  +   +  L+ +  R + +  N + 
Sbjct: 325 DGVWENFETKVLGKFNAYNIALAILIAKHLGLETERIKRLVLDLNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + +D +   N L+ +L+ IR  ++  GR ++V     + +     I+ +   ++ D+A
Sbjct: 384 --VIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNEILAEKINEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I + +       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASHLKKPQKILLKDKGQLENILQATTI--QGDLILFA 486


>gi|219682144|ref|YP_002468528.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254765988|sp|B8D7B8|MURC_BUCAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219621877|gb|ACL30033.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 484

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 160/452 (35%), Gaps = 56/452 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           I + I  GA   +  S  ++++      S+ I SN   ++    R    L  + +     
Sbjct: 56  IKKLINLGATIYLQHSEKNIKNVDFIIKSSAISSNNKEILAAKKRNIPILLRAEMIEILM 115

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
                +AV+GT GK++  S +  I   SGL    I  G   +I+S+A+    +       
Sbjct: 116 SFKKGIAVSGTHGKTTTTSMIADIFIDSGLDPTVINGGLIKSINSYAKLGSSSYFITEAD 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S+L                        +       TN+  DHID++          
Sbjct: 176 ESDASFL-----------------------YLNPNIIIVTNIESDHIDHYDNSFKKLKQT 212

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F + +     AI+  D+    +++    N  C++++ G+ +   + +      +   
Sbjct: 213 FLTFLKKITLYGTAIVCIDNNAICDIL---TNLKCKIITYGFNKNADVRIFLYKQNNFIG 269

Query: 290 QVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              I +   K  + +  +PG+    NA  A  L I  GI++ L++  L+       RFEF
Sbjct: 270 HFYIILKNNKKLNIILNIPGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEF 329

Query: 349 VG--------TNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
           +G               +  DY H    L   +K IR +  +  +I++F           
Sbjct: 330 LGFLSIDQGFDKRANCMLIDDYGHHPTELSETIKTIRISWPNKNLIMIFQPHRYTRTYNL 389

Query: 400 PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTA 452
                  L   D+ ++      +E      D   +  +I      ++    N    + T 
Sbjct: 390 YHDFVQTLSQVDVLLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTL 449

Query: 453 IEMLNKQDVLVVAGKGHETVH---IVTNGEKK 481
           I+ L   D++++ G G+       I+    KK
Sbjct: 450 IQTLQGNDIILIQGAGNIDTIAHKILIKKTKK 481


>gi|242374030|ref|ZP_04819604.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348281|gb|EES39883.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W1]
          Length = 437

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +            S  +  +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG--------LPGSDYFAFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H            TN+  DH DY +  +  ++A    F+++
Sbjct: 155 ------------RRHFLSYH------PDYAIMTNIDFDHPDYFKNIEDVYDA----FQDM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                 AII + DD Y +++          +   G+ +   I+ K +       Q  + +
Sbjct: 193 AHNVKKAIIAWGDDDYLRKL-----EVDVPIYYYGFKESDDIYAKNIQITEKGTQFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+ +D FL P  G+  + N L    +     +D   + E LE    V  RF     +++
Sbjct: 248 NGEYYDQFLSPQFGDHNILNTLSVIAISYLEKMDIENIKEALETFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++   +   +  ++ VF                 +L  AD  
Sbjct: 308 --VLVDDYAHHPREISATIESARKKYPNKEVVAVFQPHTFSRTQAFLDEFASSLSKADQV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + +      E+   +   ++I+ I G          +    E      V++  G G 
Sbjct: 366 FLCEIFGSIRENTGDLTIEDLINRIDGSALIDENSIDVLEKFENA----VILFMGAGD 419


>gi|229175402|ref|ZP_04302917.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3]
 gi|228608234|gb|EEK65541.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3]
          Length = 436

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 110/378 (29%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       FNA   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFSDINDVFNAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              +++  +           G    F   + +    +     + V    +D F     G 
Sbjct: 207 EELQKIQAKVP---VIFYGFGEDNDFQ-ARNIQKRTDGTIFDVFVRNTYYDTFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D   V   L     V  RF       +   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
              ++  R       ++ VF         K       +L  AD   + D   + R    E
Sbjct: 321 NATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|298207883|ref|YP_003716062.1| UDP-N-acetylmuramate--L-alanine ligase [Croceibacter atlanticus
           HTCC2559]
 gi|83850524|gb|EAP88392.1| UDP-N-acetylmuramate--L-alanine ligase [Croceibacter atlanticus
           HTCC2559]
          Length = 451

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 123/360 (34%), Gaps = 49/360 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +N LAV GT GK++  S +  + + SG           I++F         +        
Sbjct: 113 QNTLAVAGTHGKTTTTSILAHLLKDSG---------LNITAFLGGVSENYNTNFINDGLD 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +        S               +     + T++  DH+D + + +   +   + F
Sbjct: 164 AIVVEADEFDRSFMH------------LSPNKIAITSMDADHLDIYGSAEELSHT-FKGF 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293
            +L+  +S   +             A     + +S+   G   I  + +       +  +
Sbjct: 211 ADLVKDKSNVFL-------------AKGLPLKGISISVDGNADITAEDITIKDGSYRFNL 257

Query: 294 SVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++      F F LPG+  + NA+ A  L       S  + + L     V  RF +    
Sbjct: 258 RLQDNIIKGFEFNLPGKHNLQNAVTALALAAPFVSPSNSLTKALASFKGVQRRFTY-RIK 316

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           S    I  DYAH  + +  + + +R    + +++ VF                 +L   D
Sbjct: 317 SEKLTIIDDYAHHPSEINAVNQAVREMHPNKKVLAVFQPHLFSRTRDFINEFAESLSKFD 376

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRT----AIEMLNKQDV 461
             ++ D  P  E+P      + +   I +     I K + I+ ++      + M+   D+
Sbjct: 377 SVVLLDIYPAREEPIDGITSQALLKLIANPNKKIIGKVDLIKEVKATSAEVVAMMGAGDI 436


>gi|30022759|ref|NP_834390.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 14579]
 gi|206969750|ref|ZP_03230704.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134]
 gi|218233375|ref|YP_002369485.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264]
 gi|228910543|ref|ZP_04074357.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           200]
 gi|228954966|ref|ZP_04116983.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960959|ref|ZP_04122591.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048395|ref|ZP_04193963.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676]
 gi|229072191|ref|ZP_04205399.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185]
 gi|229081944|ref|ZP_04214436.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2]
 gi|229112151|ref|ZP_04241693.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15]
 gi|229129967|ref|ZP_04258932.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|229147254|ref|ZP_04275609.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|229152887|ref|ZP_04281070.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550]
 gi|229181005|ref|ZP_04308340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W]
 gi|229194183|ref|ZP_04321039.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876]
 gi|296505155|ref|YP_003666855.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           BMB171]
 gi|33301350|sp|Q816X6|MURC_BACCR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711860|sp|B7H746|MURC_BACC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29898318|gb|AAP11591.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 14579]
 gi|206735438|gb|EDZ52606.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134]
 gi|218161332|gb|ACK61324.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264]
 gi|228589274|gb|EEK47237.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228602562|gb|EEK60048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W]
 gi|228630707|gb|EEK87353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550]
 gi|228636212|gb|EEK92687.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|228653492|gb|EEL09365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228671267|gb|EEL26569.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15]
 gi|228701532|gb|EEL54026.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2]
 gi|228710929|gb|EEL62896.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185]
 gi|228723120|gb|EEL74497.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676]
 gi|228798739|gb|EEM45720.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804693|gb|EEM51295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228849107|gb|EEM93947.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           200]
 gi|296326207|gb|ADH09135.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           BMB171]
          Length = 436

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 113/379 (29%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    S+         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMSQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFADINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++  +       V+  G+ +      + +    +     + V    +D F     G
Sbjct: 207 EELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 NHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   ++  R       I+ VF         K       +L  AD   + D   + R    
Sbjct: 320 INATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKG 379

Query: 426 EKIRAEIIHGIPGFIEKGN 444
           E    ++   I G     +
Sbjct: 380 ELTIEDLQKRIDGAELITD 398


>gi|268319921|ref|YP_003293577.1| hypothetical protein FI9785_1451 [Lactobacillus johnsonii FI9785]
 gi|262398296|emb|CAX67310.1| murC [Lactobacillus johnsonii FI9785]
          Length = 437

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 126/409 (30%), Gaps = 64/409 (15%)

Query: 83  SATIRSNTPILVV-------DNTRKFLSLFASRLYGKHPENI---------LAVTGTSGK 126
            A I+SN   ++V       DN      L  +  +  +P+ +         + V+GT GK
Sbjct: 59  PANIKSNAEQVIVKGNAFKQDNPEVAACLDKNVEWQSYPDTVEEIVQVHTSIGVSGTHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S +  +      +S+ IG                 S  ++ +A  Y       H  
Sbjct: 119 TSTTSLLSHVLGEVAPTSYLIGDGRGKG--------VEGSRFFVYEADEYRRHFLAYH-- 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH DY + Q  Y +A     ++    +    +
Sbjct: 169 -----------------PDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQ---TKKALFV 208

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           + DD   + +            + G++         +       +  +   GKD   F  
Sbjct: 209 WGDDKRLQSL-----KTDIPKYTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEI 263

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  + N      +     +    + E L        R  F   +     +  DYAH
Sbjct: 264 HLFGDHSILNTTAVIAVAYTEKVPMNDIKEGLLTFKGAKRR--FAEKDFGDVSVIDDYAH 321

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RS 422
               +   ++  R       ++VVF         K     +  L   D A VT       
Sbjct: 322 HPTEMRATIQAARQKFPDKELVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAR 381

Query: 423 EDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E    I   ++++ IPG      + I  +       +K  V+V  G G 
Sbjct: 382 EASGDISSEDLVNNIPGSEVIDLDNIADLTK-----HKNAVVVFMGAGD 425


>gi|298368899|ref|ZP_06980217.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282902|gb|EFI24389.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 458

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 120/360 (33%), Gaps = 22/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L V GT GK++ AS +  + + +GL+   +     I    ++  ++   P    +
Sbjct: 103 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSVSARLPQTPRQ 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 158 DPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAI-QTQFH 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   +        ++ + +       V   G +    H  +V  ++      
Sbjct: 217 HLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQVGEVNADGSFD 270

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++GK      + L G     NAL         G+D     E L     V  R E  GT
Sbjct: 271 VLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKNVKRRMEIKGT 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
              G  +Y D+AH   ++E  ++ +R       I+              +   +  +L  
Sbjct: 331 -VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTMKAALPESLKG 389

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           AD            D +   AE +  + G +  G   +A +   ++     D ++V   G
Sbjct: 390 ADQVFC---YAGGVDWD--VAEALAPLGGKLHVGQDFDAFVAEIVKNAEAGDHILVMSNG 444


>gi|227889515|ref|ZP_04007320.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849993|gb|EEJ60079.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus johnsonii
           ATCC 33200]
          Length = 437

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 130/417 (31%), Gaps = 63/417 (15%)

Query: 75  SAYSLQDF-SATIRSNTPILVV-------DNTRKFLSLFASRLYGKHPENI--------- 117
           +   ++DF  A I+SN   ++V       DN      L  +  +  +P+ +         
Sbjct: 50  AGIEVKDFDPANIKSNDEQVIVKGNAFKQDNPEVAACLDKNVEWQSYPDTVEEIVQMHTS 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+GT GK+S  S +  +      +S+ IG          D+R                
Sbjct: 110 IGVSGTHGKTSTTSLLAHVLGEVAPTSYLIGDGR--GKGVADSRFFVYEAD--------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY + Q  Y +A     ++ 
Sbjct: 159 ----------EYRRHFLAYH------PDYQIMTNIDFDHPDYFKDQDDYTSAFQTAADQ- 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD   + +            + G++         +       +  +   
Sbjct: 202 --TKKALFVWGDDKRLQSL-----KTDIPKYTYGFKDTDDFQAVNIEKTTTGSKFNVLAH 254

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GKD   F   L G+  + N      +     +    + E L        R  F   +   
Sbjct: 255 GKDLGRFEIHLFGDHSILNTTAVIAVAYTEKVPMNDIKEGLLTFKGAKRR--FAEKDFGD 312

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +   ++  R       ++VVF         K     +  L   D A 
Sbjct: 313 VSVIDDYAHHPTEMRATIQAARQKFPDKELVVVFQPHTFSRTKKYQKDFEEILRDVDKAY 372

Query: 415 VTDDNP-RSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           VT       E    I   ++++ IPG       ++ I    +      V+V  G G 
Sbjct: 373 VTPIYASAREASGDISSEDLVNNIPGSEVID--LDNIADLTKHKKA--VVVFMGAGD 425


>gi|261254015|ref|ZP_05946588.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
 gi|260937406|gb|EEX93395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
          Length = 451

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 121/363 (33%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D   ++V++R           G Q  +   K +       +  
Sbjct: 207 LV-RTVPGNGRILAPKQDIALEDVLQR--GCWSETEFTGQQANWRAEKLIAD---GSEFK 260

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + ++   + + L G+  V NAL+A G    +G+   L  E L K      R E  G 
Sbjct: 261 VFFQDEEVGIVKWDLVGDHNVDNALMAIGAARHVGVTPDLACESLAKFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  + S  II V         +G        +L  
Sbjct: 320 QVNGVTVYDDFAHHPTAIELTLGGLRNKVGSDNIIAVLEPRSATMKRGVHKDALAASLAK 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P+ I     +I        +   +  E +   +        ++V 
Sbjct: 380 ADQVFLYQ-------PDSIDWSVKDIASQCHQPADTSADVDELVAKIVSHAQAGSHILVM 432

Query: 466 GKG 468
             G
Sbjct: 433 SNG 435


>gi|239828070|ref|YP_002950694.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. WCH70]
 gi|259509774|sp|C5D6B2|MURC_GEOSW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239808363|gb|ACS25428.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. WCH70]
          Length = 433

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 128/406 (31%), Gaps = 57/406 (14%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+    ++  A      P++      +FL  F  +         +AVTG+ GK+S
Sbjct: 64  VIAGNAFPETHEEIQAAHELGVPVI---RYHRFLGEFLQKF------TSIAVTGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q    +S+ IG   T             +  Y    LSY            
Sbjct: 115 TTGLLAHVMQGVHPTSYLIG-DGTGKGIEGSKYFVFEACEYRRHFLSYF----------- 162

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY       F+A   +  ++   +   I   
Sbjct: 163 ---------------PDYAIMTNIDFDHPDYFANIDDVFSAFQEMALQV---KKGIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           DD Y +++  +       VL  G+        + V          + V    F  F  P 
Sbjct: 205 DDEYLQKIQAKVP-----VLFYGFGDDNDFQARNVVKTTEGTAFDVFVRNTFFASFEIPH 259

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V NAL    LC    +D  ++ E L+    V  RF      ++   +  DYAH  
Sbjct: 260 FGDHNVLNALAVIALCHYEEMDVRIIQERLKTFQGVKRRFSEKVLGNQ--ILIDDYAHHP 317

Query: 367 NSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSED 424
             +   +   R    GR IV +F                 +L  AD   + D      E 
Sbjct: 318 REIIATIDAARQKYPGREIVAIFQPHTYTRTQTFLREFAESLQQADQVYLCDIFGSAREH 377

Query: 425 PEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             K+   ++   IP          +I    E      VL+  G G 
Sbjct: 378 HGKLSIHDLQAQIPNSRLIQEDNTSILKQHENA----VLIFMGAGD 419


>gi|316985037|gb|EFV63990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           H44/76]
          Length = 465

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 120/360 (33%), Gaps = 22/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L V GT GK++ AS +  + + +GL+   +     I    ++  ++   P    +
Sbjct: 110 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGVSARLPQTPRQ 164

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 165 DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAI-QTQFH 223

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   +        ++ + +       V   G +  +   +            
Sbjct: 224 YLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEANA----DGSFD 277

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++GK      + L G     NAL        +G+D     E L     V  R E  GT
Sbjct: 278 VLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVKRRMEIKGT 337

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDL 409
            + G  +Y D+AH   ++E  ++ +R    G  I+              +     ++L  
Sbjct: 338 -ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTMKSALPVSLKE 396

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           AD            D +   AE +  + G +  G   +A +   ++     D ++V   G
Sbjct: 397 ADQVFC---YAGGVDWD--VAEALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILVMSNG 451


>gi|295399556|ref|ZP_06809538.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294979022|gb|EFG54618.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 434

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 123/395 (31%), Gaps = 55/395 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++  A      P++      +FL  F  +         +AV G+ GK+S    +  + Q 
Sbjct: 75  EEIQAAYELGVPVI---RYHRFLGEFLQKF------TSIAVAGSHGKTSTTGLLAHVMQG 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +  +S+ IG   T             +  Y    LSY                       
Sbjct: 126 AHSTSYLIG-DGTGKGIEGSKYFVFEACEYRRHFLSYF---------------------- 162

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+  DH DY       F+A   +  ++   +   I   DD Y +++   
Sbjct: 163 ----PDYAIMTNIDFDHPDYFANIDDVFSAFQEMALQV---KKGIIACGDDEYLQKI--- 212

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
              A   VL  G+        + V          + V    F  F  P  G+  V NAL 
Sbjct: 213 --KAKVPVLFYGFGDDNDFQARNVVKTTEGTSFDVFVRNTFFASFEIPRFGDHNVLNALA 270

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              LC    ID  ++ E L+    V  RF      ++   +  DYAH    +   +   R
Sbjct: 271 VIALCHYEEIDVHIIQERLKTFQGVKRRFSEKVLGNQ--ILIDDYAHHPREIIATIDAAR 328

Query: 378 TITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIH 434
               GR IV +F                 +L  AD   + D      E   K+   ++  
Sbjct: 329 QKYPGREIVAIFQPHTYTRTQAFLREFAESLQQADQVYLCDIFGSAREHHGKLSIQDLQA 388

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            IP          ++    E      VL+  G G 
Sbjct: 389 QIPSSRLIQENDTSVLKQHENA----VLIFMGAGD 419


>gi|323464730|gb|ADX76883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 449

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 125/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TGT+GK++V S +  +  +S  +    G    ++S          +  YL   L
Sbjct: 111 APIIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGFVASK---VAQEVKTDEYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+ H                  +      TNL   H+DYH+  + Y NAK R+F
Sbjct: 168 SSFQLLGIEHY-----------------RPHIAIITNLYSAHLDYHENLENYQNAKKRIF 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E     ES  +I+ D    +  +        ++L    Q +   +           V + 
Sbjct: 211 EN--QTESDYLIFND---KQRHLIDTSKIRAKILYFSTQHRVDGIYVEKEYIVYNGVRL- 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      LPGE  + N L A    I  G+  + +++ L     +  R +++G N  
Sbjct: 265 ----IHLDDIVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFSGIAHRLQYIGNNKT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               Y + +  +N+L      + +     I +    G DR  G   ++  +        +
Sbjct: 321 NK--YYNDSKATNTLATQF-ALSSFKQPVIWLC--GGLDRGNGFDELIPYM---NNVRVM 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           VT      E  +K            I   +  +A+    +++   DV+++
Sbjct: 373 VT----FGETQDKFVKLGESQGKYVIRAKDVTDAVAKVQDVIEPNDVVLL 418


>gi|124004439|ref|ZP_01689284.1| UDP-N-acetylmuramate--alanine ligase [Microscilla marina ATCC
           23134]
 gi|123990011|gb|EAY29525.1| UDP-N-acetylmuramate--alanine ligase [Microscilla marina ATCC
           23134]
          Length = 479

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/422 (16%), Positives = 128/422 (30%), Gaps = 45/422 (10%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
             IP+A    A  +VV +                   V    + L               
Sbjct: 60  AHIPEAFTHPATTLVVYTPAVPAQHKQLNYFKQHNFQVKKRAEVLGFL------TQDRFT 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK+S +S +  I   +  +      T+ +    Q+          + K    +
Sbjct: 114 VAVAGTHGKTSTSSMIAHIIHYAKKNC-----TAFLGGILQEYESNLILSQEIDKESIMV 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                   S               +        ++  DH+D +  + +  ++    F + 
Sbjct: 169 VEADEYDRSFLH------------LHPNIAVLNSVDADHLDIYGNEDSVLDS-YVAFIKK 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + +     I  +      ++    N          Q      + V             E 
Sbjct: 216 IKENGRLFIKKEIHLGTNLL---PNTVITKSFALEQNADCQAQHVQVSPEAFYFDFHTED 272

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   + NA VA  + + +GID   + + L     V  RFE++    +  
Sbjct: 273 ITIQNIKIKVPGYHNIINATVAIAVALELGIDPQQIRDALAVYKGVKRRFEYI-LQHKNI 331

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DYAH    +E+ LK+++ +   + I  +F                 +L L D  ++
Sbjct: 332 IYIDDYAHHPTEIEVFLKSVKAMYPNKKITAIFQPHLFTRTRDFLDGFAKSLSLTDQLVL 391

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI------EMLNKQD--VLVVAGK 467
            D  P  E P  I+      I   +   +     +T        + L + D  V++  G 
Sbjct: 392 LDIYPAREQP--IQGVTSQLILDKVTIKD-----KTLCGKNELYDFLQRNDTEVVLTIGA 444

Query: 468 GH 469
           G 
Sbjct: 445 GD 446


>gi|55981054|ref|YP_144351.1| UDP-N-acetylmuramate--alanine ligase [Thermus thermophilus HB8]
 gi|55772467|dbj|BAD70908.1| UDP-N-acetylmuramate--alanine ligase [Thermus thermophilus HB8]
          Length = 446

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 125/410 (30%), Gaps = 56/410 (13%)

Query: 82  FSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
               +  + P +V          + + L A  L  +    +    G +   +    +  I
Sbjct: 63  VPTPVPPDHPEVVEARKRGLRVLRRMELLAHFLAQRPSAGVTGTHGKT---TTTGMLAAI 119

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +GL  +                       +L   L+ L            +      
Sbjct: 120 LLEAGLDPWV----------------------FLGGELALLPGNARPGRGPRVAEVDESD 157

Query: 197 HRLDGIKLIAGSFTNLGRDHI--------DYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                +++     TNL  DH+        +YH++ +A   A        L      ++ A
Sbjct: 158 PLFREVRVSVAVATNLEADHVAPRGERAPNYHESLEALKEA----MRGFLAGAKTVVVPA 213

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + +            G  G+        +        +  EG   +    +PG
Sbjct: 214 MDPGLLALTEGLPRRL-----FGPGGEVWAEAVDLSPSGASFRLVHREGPLGEVHLRVPG 268

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V+NAL AA   +A+G     +   L +   V  RFE VG    G  +  DYAH    
Sbjct: 269 RHNVHNALAAALAALALGASPEAISRGLSRFPGVGRRFERVGEVG-GAWVVDDYAHHPTE 327

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS----ED 424
           ++  L+    ++  R+ V F         +       AL  A   +V           E 
Sbjct: 328 VQATLEAAL-LSGRRVRVFFQPHRLLRTQELWEAFAQALKGAHEVVVLPVYTAGERGRES 386

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           PE +   I   +        + ++ EA+  A      +D+L+  G G  T
Sbjct: 387 PEALSDRIAKRLEDLGRPARRMDKEEALAYARATARPEDLLLFMGAGDVT 436


>gi|15677021|ref|NP_274173.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|15677057|ref|NP_274209.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|7226382|gb|AAF41532.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|7226420|gb|AAF41567.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|325140356|gb|EGC62878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis CU385]
 gi|325200178|gb|ADY95633.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           H44/76]
          Length = 458

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 120/360 (33%), Gaps = 22/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L V GT GK++ AS +  + + +GL+   +     I    ++  ++   P    +
Sbjct: 103 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGVSARLPQTPRQ 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 158 DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAI-QTQFH 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   +        ++ + +       V   G +  +   +            
Sbjct: 217 YLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEANA----DGSFD 270

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++GK      + L G     NAL        +G+D     E L     V  R E  GT
Sbjct: 271 VLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVKRRMEIKGT 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDL 409
            + G  +Y D+AH   ++E  ++ +R    G  I+              +     ++L  
Sbjct: 331 -ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTMKSALPVSLKE 389

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           AD            D +   AE +  + G +  G   +A +   ++     D ++V   G
Sbjct: 390 ADQVFC---YAGGVDWD--VAEALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILVMSNG 444


>gi|309779051|ref|ZP_07673818.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
 gi|308922116|gb|EFP67746.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
          Length = 886

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 136/388 (35%), Gaps = 34/388 (8%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
            ++  G+ P  I+ +TGT+GK+ VA  V Q+ Q SG  +             Q       
Sbjct: 479 GAQDDGRIP--IVGITGTNGKTVVAKLVAQMLQLSGKHTGLGCSDGLYLDRRQVESGART 536

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI-DYHQTQ 223
                      L ++ V     E+ S  +    L   +   G  TN G  DH+ D++   
Sbjct: 537 DRAAWDACHRILMNRAVEAAVFESDSGMILSQGLPYDRCQVGVVTNFGKPDHLGDFYVED 596

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +    + +R   +++ K    ++ A DA    +++ A      V+     G    +    
Sbjct: 597 EDRMYSVLRTQIDVVLKTGVGVLNAADA---RLVEMADLCDGEVIFFALTGDLEAIAAHR 653

Query: 284 AIHNKQQVTIS--------------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           A   +                     +       +     FQ+ N L A     A+GI +
Sbjct: 654 AAGKRAVFVRDGKVVLATGPTELALADVSAIPLTYDGRVPFQLENVLAAVATGWALGISN 713

Query: 330 ALVLEHLEKLH--VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            L+   +       V     F      G  I VD AH +++LE +   +    + R  +V
Sbjct: 714 DLMRAGILTFDVGQVDVPGRFTLFQHHGATIVVDDAHNASALEALAAALDNFPAQRRTLV 773

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP--RSEDP--EKIRAEIIHGIPG----- 438
           FG G  R        G +     D  ++ +D    R++     + RA +  G+       
Sbjct: 774 FGAGLQRRDEDLVAQGTVIGQTFDRVLLCEDASVKRTDAEFDRQARALLKQGLQAGGRVA 833

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +E   R + +  A+  +   D+LV+
Sbjct: 834 EVVVEGAKRRDVVDAALSQVTAGDLLVL 861


>gi|308185660|ref|YP_003929791.1| L-alanine adding enzyme, UDP-N-acetyl- muramate:alanine ligase
           [Pantoea vagans C9-1]
 gi|308056170|gb|ADO08342.1| L-alanine adding enzyme, UDP-N-acetyl- muramate:alanine ligase
           [Pantoea vagans C9-1]
          Length = 492

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 135/434 (31%), Gaps = 55/434 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKH 113
           IA GA         ++ D S  + S     + P LV    ++        + A  +  +H
Sbjct: 61  IALGATIYFNHRPENVTDASVVVVSSAVSQDNPELVAAREQRIPVIRRAEMLAELMRFRH 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V  I   +GL    +      ++        +         
Sbjct: 121 G---IAVAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGTHARLGHS------RYL 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +Q            
Sbjct: 172 IAEADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFIN 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++  DD   ++++ R                        +        I
Sbjct: 217 FLHNLPFYGRAVMCVDDVVIRDLIPRV-GRHITTYGFSDDADLRIENYEQSGAQGHFTLI 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
             +          PG     NA  A  +    GI+   +L  LE       RF+ +G   
Sbjct: 276 RQDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDNAILAALESFQGTGRRFDLLGEFP 335

Query: 351 ---TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404
               N + G   +  DY H    ++  +K  R      ++++VF                
Sbjct: 336 TEPVNGQPGTAMLVDDYGHHPTEVDATIKAARAGWPDKKLVMVFQPHRYSRTRDLFDDFA 395

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI----RTAI-EMLNK- 458
             L   D+ ++ D     E    I       +   I    +++ I      A+ EML   
Sbjct: 396 NVLSHVDVLLMLDVYSAGET--AIPGADSRSLCRAIRNRGKVDPILVPEHDALPEMLAPL 453

Query: 459 ---QDVLVVAGKGH 469
               D+++V G G+
Sbjct: 454 LSGNDLILVQGAGN 467


>gi|115374632|ref|ZP_01461911.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368398|gb|EAU67354.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 431

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 120/387 (31%), Gaps = 46/387 (11%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           F +   +    +    ++A  GT GK++ +S +  +   +G     +     ++     N
Sbjct: 52  FPAALGALFLKQSHSVVVA--GTHGKTTTSSLMAHVLVDAGKDPSFL--VGGVTQNYAGN 107

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                 P ++ +   Y      T    + S     Q R           T++  DH D  
Sbjct: 108 YRVGKGPHFVVEGDEY-----DTAYWDKGSKFLHYQPRT-------AILTSVEFDHADIF 155

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +    Y  A    F  L+P E   ++ A    +  +           ++          +
Sbjct: 156 RDLPHY-EATFEKFVRLIPPEGQLVVCAAYPNALRIAGGTRARVVTYVAREGAQADYTPR 214

Query: 281 KVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           KV       +  +   G         L G   V NAL        +G+    +   L   
Sbjct: 215 KVSFGAEGARFEVVERGTVLGTARMELTGLHNVENALSVIAAARGLGLSFEEIARGLSSF 274

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG-GDRDQG 397
             V  R E  G    G  +  D+AH   ++   +  IR      R+  +F        + 
Sbjct: 275 RGVKRRQEVRGEPG-GILVVDDFAHHPTAVRETIAAIRQRYPERRLWALFEPRSNTSRRN 333

Query: 398 KRPIMGKIALDLADIAIV-------------TDDNPR---SEDPEKIRAEIIHGIPGFIE 441
                   A   A  A +               D PR   +   + I+A+    +P  +E
Sbjct: 334 IHQEDYAHAFTGAARASLKVPERHDKVPTHEELDVPRLCEALKAQGIQADHASDVPSLLE 393

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  R EA+R         DVL+V   G
Sbjct: 394 RVTR-EALR--------GDVLLVMSNG 411


>gi|42783876|ref|NP_981123.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10987]
 gi|49481451|ref|YP_038734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|206978123|ref|ZP_03239006.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97]
 gi|217962174|ref|YP_002340744.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH187]
 gi|228987941|ref|ZP_04148048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229141422|ref|ZP_04269960.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|229158298|ref|ZP_04286365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342]
 gi|229198852|ref|ZP_04325544.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293]
 gi|48428295|sp|P61675|MURC_BACC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798279|sp|Q6HCJ2|MURC_BACHK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711861|sp|B7HSM3|MURC_BACC7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|42739806|gb|AAS43731.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 10987]
 gi|49333007|gb|AAT63653.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|206743659|gb|EDZ55083.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97]
 gi|217066938|gb|ACJ81188.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH187]
 gi|228584626|gb|EEK42752.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293]
 gi|228625256|gb|EEK82016.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228642203|gb|EEK98496.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|228771806|gb|EEM20265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|324328581|gb|ADY23841.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 110/378 (29%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              +++  +           G    F   + +    +     + V    +D F     G 
Sbjct: 207 EELQKIQAKVP---VIFYGFGEDNDFQ-ARNIQKRTDGTIFDVFVRNTYYDTFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D   V   L     V  RF       +   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
              ++  R       I+ VF         K       +L  AD   + D   + R    E
Sbjct: 321 NATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|301056196|ref|YP_003794407.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis CI]
 gi|300378365|gb|ADK07269.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 110/378 (29%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              +++  +           G    F   + +    +     + V    +D F     G 
Sbjct: 207 EELQKIQAKVP---VIFYGFGEDNDFQ-ARNIQKRTDGTIFDVFVRNTYYDTFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D   V   L     V  RF       +   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
              ++  R       I+ VF         K       +L  AD   + D   + R    E
Sbjct: 321 NATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|297588764|ref|ZP_06947407.1| possible tetrahydrofolate synthase [Finegoldia magna ATCC 53516]
 gi|297574137|gb|EFH92858.1| possible tetrahydrofolate synthase [Finegoldia magna ATCC 53516]
          Length = 415

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 134/381 (35%), Gaps = 47/381 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ V GT+GK S ++F+ Q  +  G  +        I+ + +       S     +   
Sbjct: 40  KIIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFMRIFE 99

Query: 176 -------------------------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                                    Y + Q   +V +E    G         + +    T
Sbjct: 100 IIKDTIEENDIKVSTFEFITLCAIYYFAEQKCEYVVLEVGMGGRLDATNATDETLLSVIT 159

Query: 211 NLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            +G DH +Y   T +     K  + ++        ++Y       +V +         L 
Sbjct: 160 KIGLDHQEYLGNTLEEIAYEKACIMKQ----NGRCVVYDQQESVLDVFREVAEERNNKLY 215

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI----AI 325
           +    +  +++     +       S + K+      L G +Q+YNA +A          +
Sbjct: 216 ICDFDEAKNIEINATYN-------SFDWKNLHIETRLVGRYQLYNAQLALSAIDVLRDEL 268

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    +++  +  + +P RF+ +        +  D  H ++ ++  LK+      G   
Sbjct: 269 DLSDEDIIKGFKNAY-IPARFDVI---RHNPTVIYDGGHNADGVKA-LKSSIESVFGDKK 323

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +VF  G  +D+     +  I  +       T D+PR+   E ++ +I       + K N 
Sbjct: 324 IVFVYGVLKDKDYDDEIKLIHENAKAFVTFTPDSPRALKAEDLKKQIEAYSDNVVAKSNV 383

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A+  AIE   K DV+++ G
Sbjct: 384 NDAVDYAIEHF-KDDVIIIFG 403


>gi|27468331|ref|NP_764968.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57867174|ref|YP_188872.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           RP62A]
 gi|33301388|sp|Q8CS47|MURC_STAES RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68565678|sp|Q5HNG9|MURC_STAEQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27315877|gb|AAO05012.1|AE016748_246 UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57637832|gb|AAW54620.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus epidermidis
           RP62A]
          Length = 437

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 127/360 (35%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +            S  +  +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG--------LPGSDYFAFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H            TN+  DH DY +     ++A    F+ +
Sbjct: 155 ------------RRHFLSYH------PDYAIMTNIDFDHPDYFKNIDDVYDA----FQHM 192

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            L  +   I + DD Y +++     +    V   G+ +   I+ K +       Q  + +
Sbjct: 193 ALNVKKGIIAWGDDEYLRKL-----DVDIPVYYYGFKETDDIYAKNIQITEKGTQFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G   + NAL    +     ++   + E L     V  RF     +++
Sbjct: 248 KGEFYDQFLSPQYGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAESLSKADQV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +      E+   +   ++I+ I G             +I++L K D  V++  G G 
Sbjct: 366 FLCEIFGSIRENTGDLTIEDLINRIDGSTLID------ENSIDVLEKFDNAVILFMGAGD 419


>gi|296125387|ref|YP_003632639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
 gi|296017203|gb|ADG70440.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
          Length = 471

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 138/394 (35%), Gaps = 46/394 (11%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           K +             N +AVTGT GK++  + + +I      S  +      + +    
Sbjct: 111 KIIGEIEFAYNLLPNRNYIAVTGTDGKTTTVTLIYKIIS----SYKKARLVGNVGNTFSK 166

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
              T      +   LS                       ++       +  N+  DH+D 
Sbjct: 167 ELETIEPDEDIVLELSSFQ-----------------LETVEKFHAHIAAILNIAEDHLDR 209

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKF-- 276
           ++  + YFNAK  +      K    I+  D+ Y+       +N    ++L+   + KF  
Sbjct: 210 YKDIEEYFNAKKNISINQ-NKNDFLILNYDNIYTNIWYNELNNNCKMKLLTFSLKSKFAD 268

Query: 277 -IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             + ++   I+ + +   S++ +       + G+  V N L A  +C+   I +  +   
Sbjct: 269 IYYNEEDEYIYYENEKLFSIKER------KILGKHNVANILAAVLVCLKDNIPAEHIEHV 322

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           +     +  R E V     G +   D   T  S+  ++  +++      I++   G +++
Sbjct: 323 VNNFKGIEHRVELV-AEINGVKYINDSKAT--SMNAVMSALKSFDK--DIILIMGGRNKN 377

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                +   I   +  + ++       E  E    ++IH     I   +  +A   A  +
Sbjct: 378 IDFTSLNNLIESRVKKLILI------GEAAEA-LDDMIH-FENKIIIKDFTDAFNYASAI 429

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
               D ++++  G  +  +  N E++      ++
Sbjct: 430 SINGDTVLLS-PGCASFDMFKNYEERGKYFKSLV 462


>gi|188585928|ref|YP_001917473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226722938|sp|B2A2H0|MURD_NATTJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|179350615|gb|ACB84885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 461

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 115/317 (36%), Gaps = 24/317 (7%)

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQ--GVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           I  F + +  +      +   LS ++ +      + +E SS  L+   + G +       
Sbjct: 134 IGEFFEASGYSIYVAGNVGLPLSQIACEVTDTDFIVLEVSSFQLEF--IKGFRPKVSMIL 191

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-- 268
           N+  DH+D+H    +Y  AKM +F+    K+  +++  DD  +  + + +          
Sbjct: 192 NITPDHLDWHGDLDSYIRAKMNIFKNQTSKD-FSVVNVDDETTFGLNRESKGRKLNFSKN 250

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           S+  +G FI    +   +   + +I  +         LPGE  + N L A    +   I 
Sbjct: 251 SLRTEGSFIEDDHLVINYLDTKTSIIHK-----HDILLPGEHNLENVLAATTATLPFSIS 305

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   L+    V  R E V     G +   D   T+  +E  LK I +  S   +++ 
Sbjct: 306 EENIRNTLKAFSGVDHRLELV-RELNGVKFINDSKGTN--VEASLKAINSFDS---MILI 359

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIE 447
             G D+          I         +       E  +KI + +     P +    N   
Sbjct: 360 AGGKDKGADFSEFAEAIKEKGVKKVYL-----FGETYKKIASALDKVYYPEYYIVNNLET 414

Query: 448 AIRTAIEMLNKQDVLVV 464
           A+  A +     DV+++
Sbjct: 415 AVTGAYQDAISGDVVLL 431


>gi|119477390|ref|ZP_01617581.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
 gi|119449316|gb|EAW30555.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
          Length = 456

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 104/307 (33%), Gaps = 24/307 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA  GT GK++ +S +  I + +G+S   +     I +    +     S  ++ +
Sbjct: 101 QDRWVLAAAGTHGKTTTSSMLAWILEYAGMSPGYL--IGGIPANFGVSARLGESSFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                       +       NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFIHY------------RPRTAILNNLEFDHADIFDDLPAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           L   L+P+    I+ A+D    EV+ +          L       +     V       +
Sbjct: 207 LV-RLIPRNGRIIVPANDQNITEVIGQGLWSGLEKTTLRDSITADWCARALVSD---GSE 262

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             + ++G    +  +   G+  + N + A      +G+   +  E L +   V  R E +
Sbjct: 263 FDVLLKGVVVGNVKWDHSGDHNLCNGISAIAAARHVGVTPEIAAEALCQFEGVKRRMELL 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII--VVFGCGGDRDQGKRPIMGKIAL 407
           G   RG  +Y D+AH   ++E  L  +R    G  I  V+         G       +A 
Sbjct: 323 G-KPRGIAVYDDFAHHPTAIETTLAGLRAKVGGEKITAVIEPRSNTMRMGAHLDKLAMAT 381

Query: 408 DLADIAI 414
            LAD  I
Sbjct: 382 QLADEVI 388


>gi|91776858|ref|YP_546614.1| UDP-N-acetylmuramate [Methylobacillus flagellatus KT]
 gi|91710845|gb|ABE50773.1| UDP-N-acetylmuramate [Methylobacillus flagellatus KT]
          Length = 460

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 120/381 (31%), Gaps = 27/381 (7%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            +           G+  + +LAV GT GK++  S +  I +  GL+   +     I    
Sbjct: 92  PQWLAEHLLYAKQGEPEKWVLAVAGTHGKTTTTSMLAWILEYGGLAPGFL-----IGGVP 146

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           ++  ++   P    +    +S   V       ++    + +    +       NL  DH 
Sbjct: 147 ENFGVSARLPGVPRQDDKGVSPFFVIEADEYDTAFFDKRSKFVHYRPRTVILNNLEFDHA 206

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           D     +A    +       +P     +    +   + V+KR            +Q   +
Sbjct: 207 DIFPDLEAI-ETQFHHLVRTVPSNGLVVANGKEGSLRRVIKRGCWTPVEYFGTDWQATDV 265

Query: 278 HLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                         T+  +GK +    + L GE    NAL A       G+     +  L
Sbjct: 266 DA--------AGSFTVRFQGKAYGRVQWQLLGEHNRMNALAALAAARHAGVAIDAGIVAL 317

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +   V  R E  GT + G  +Y D+AH   ++   +  +R       I+          
Sbjct: 318 SQFRSVKRRMEVRGT-ANGITVYDDFAHHPTAIATTVAGLRDKVGKARILAVLEPRSNTM 376

Query: 397 GKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
               +   +  +L  AD+     ++    D       I H    F      IEAI     
Sbjct: 377 KLGVMKDALPGSLADADLVFCYGEHLGW-DAASALQPIQHKAAAFDSMSVLIEAIA---A 432

Query: 455 MLNKQDVLVVAGKG-----HE 470
                D ++V   G     HE
Sbjct: 433 EAQPGDHILVMSNGGFGGIHE 453


>gi|67925908|ref|ZP_00519191.1| Cytoplasmic peptidoglycan synthetase, N-terminal:ATP-dependent
           carboxylate-amine ligase-like, ATP-grasp:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67852248|gb|EAM47724.1| Cytoplasmic peptidoglycan synthetase, N-terminal:ATP-dependent
           carboxylate-amine ligase-like, ATP-grasp:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 872

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 126/357 (35%), Gaps = 31/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I +++G     +G TST   +  D  +          A   L    V    +E++ 
Sbjct: 505 LTAHIYRQTGKV---VGYTSTDGVYIGDYLVEKGDNTGPFSAAMILKDPTVEVAVLESAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+      T +     K  +  E++  +  A++ AD
Sbjct: 562 GGILRSGLAFDSCDVGIVLNVAADHLGLGDINTIEQMAQVKGVI-AEVVHPDGHAVLNAD 620

Query: 250 DAYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTISVEG-K 298
           D     + ++                    +   G     +       + Q T+ +E   
Sbjct: 621 DPLVAAMAEKVKGKVAYFSMNPDNEIIENHLRRDGLAAVYENGYLSILEGQFTLRIEEAV 680

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
           +          F + NAL A     + G+D   + + +          PGR         
Sbjct: 681 NIPMTMGGMAPFMIANALAACLAAFSQGVDIEDIRQGVRTFTASAEQTPGRMNLFNLGEH 740

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH     E + + ++     R+ VV G G  RD+    ++G+IA  + D  I
Sbjct: 741 HALV--DYAHNPAGYEAVGEFVKNWQGQRLGVVGGPGDRRDEDLV-LLGQIAARVFDRII 797

Query: 415 V-TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V  DD+ R  D  +    II GI        +    +  EAI   ++ ++K  ++VV
Sbjct: 798 VKEDDDKRGRDRGEAADLIIKGILSEKPQADYEAILDETEAINYGLDKVDKGGLVVV 854


>gi|291616273|ref|YP_003519015.1| MurC [Pantoea ananatis LMG 20103]
 gi|291151303|gb|ADD75887.1| MurC [Pantoea ananatis LMG 20103]
 gi|327392725|dbj|BAK10147.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Pantoea ananatis
           AJ13355]
          Length = 491

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/437 (18%), Positives = 145/437 (33%), Gaps = 61/437 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKH 113
           I  GA         ++ D S  + S     + P LV    ++        + A  +  +H
Sbjct: 61  INLGATIYFNHRPENVTDASVVVVSSAVAQDNPELVAAREQRIPVIRRAEMLAELMRFRH 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  + V  I    GL    +      ++          S  YL   
Sbjct: 121 G---IAIAGTHGKTTTTAMVSSIYAEGGLDPTFVNGGLVKAAGTH---ARLGSSRYL--- 171

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +Q            
Sbjct: 172 IAEADESDASFL---------------HLQPMVAVVTNIEADHMDTYQGDFENLKQTFIN 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++  DDA  ++++ R      ++ + G+       +         QV  
Sbjct: 217 FLHNLPFYGRAVMCVDDAVIRDLLPRVGR---QITTYGFS-DDADFRIEAFEQRGAQVHF 272

Query: 294 SVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           S+  +D          PG     NA  A  +    GI+ + +L  LE       RF+ +G
Sbjct: 273 SLIRQDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDSAILAALESFQGTGRRFDQLG 332

Query: 351 ------TNSRGGR--IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
                  N + G   +  DY H    ++  +K  R      ++ +VF             
Sbjct: 333 EFPTEPVNGQPGTAMLVDDYGHHPTEVDATIKAARAGWPDKKLAMVFQPHRYTRTRDLFD 392

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEML 456
                L   D+ ++ D     E P  I       +   I    +++ I        +EML
Sbjct: 393 DFANVLSQVDVLLMLDVYAAGETP--IPGADSRALCRAIRHRGKVDPILVPEHDALVEML 450

Query: 457 NK----QDVLVVAGKGH 469
                  D+++V G G+
Sbjct: 451 APLLSGNDLILVQGAGN 467


>gi|325299142|ref|YP_004259059.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides salanitronis
           DSM 18170]
 gi|324318695|gb|ADY36586.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides salanitronis
           DSM 18170]
          Length = 458

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 117/365 (32%), Gaps = 39/365 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             E  L V GT GK++ ++    +   S      +G  + +   +++             
Sbjct: 110 QTERGLCVAGTHGKTTTSTMAAYLLDHS-----HVGCNAFLGGISKNYES---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L S+    V +EA       H L      A   T    DH+D +    +Y  +  R
Sbjct: 155 --NLLLSEKSDFVVIEADEFDRSFHWL---TPYASVITATDSDHLDIYGDHASYVES-FR 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      I+        EV +     G  V +   +    H   +   + +    
Sbjct: 209 KYTSLIKPGGYLIVKKGIDLRPEVQE-----GVTVYTYATEEGDFHAANIRIGNGEICFD 263

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                G   D    +P    + N + A  L    G     +   +     V  RF+F   
Sbjct: 264 FISPLGNIEDIRLGVPVYVNIENGIAAMALAQLGGAFPEEIRAAMPGFKGVDRRFDFKLK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N R      DYAH    +   + +IR +   + I  VF                 +L L 
Sbjct: 324 NDR-IVFLSDYAHHPAEIRQSVSSIRMLYPDKKITAVFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+ D  P  E P +      I   +  GI   +    R E +   +    K +VLV 
Sbjct: 383 DEVILLDIYPAREKPIEGVSSRLIFDRLRPGIEKSLC---RKEDLLDVLRN-KKLEVLVT 438

Query: 465 AGKGH 469
            G G 
Sbjct: 439 LGAGD 443


>gi|30264759|ref|NP_847136.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Ames]
 gi|47530235|ref|YP_021584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49187576|ref|YP_030829.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Sterne]
 gi|52140819|ref|YP_086015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L]
 gi|65322056|ref|ZP_00395015.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Bacillus anthracis
           str. A2012]
 gi|118479825|ref|YP_896976.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str.
           Al Hakam]
 gi|165869729|ref|ZP_02214387.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0488]
 gi|167634042|ref|ZP_02392365.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0442]
 gi|167637992|ref|ZP_02396270.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0193]
 gi|170685837|ref|ZP_02877060.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0465]
 gi|170705461|ref|ZP_02895925.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0389]
 gi|177651186|ref|ZP_02934017.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0174]
 gi|190568261|ref|ZP_03021169.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032962|ref|ZP_03100375.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W]
 gi|196040822|ref|ZP_03108120.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196043730|ref|ZP_03110967.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108]
 gi|218905917|ref|YP_002453751.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820]
 gi|225866676|ref|YP_002752054.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB102]
 gi|227817477|ref|YP_002817486.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. CDC
           684]
 gi|228917339|ref|ZP_04080893.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929741|ref|ZP_04092758.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228948436|ref|ZP_04110719.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093789|ref|ZP_04224888.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42]
 gi|229124255|ref|ZP_04253447.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201]
 gi|229186944|ref|ZP_04314098.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|229602579|ref|YP_002868966.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0248]
 gi|254687497|ref|ZP_05151353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725061|ref|ZP_05186844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           A1055]
 gi|254736798|ref|ZP_05194504.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741835|ref|ZP_05199522.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Kruger B]
 gi|254754567|ref|ZP_05206602.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Vollum]
 gi|254757399|ref|ZP_05209426.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Australia 94]
 gi|300118871|ref|ZP_07056584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1]
 gi|33301353|sp|Q81KQ2|MURC_BACAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798169|sp|Q633A2|MURC_BACCZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222955|sp|A0RJS6|MURC_BACAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711858|sp|B7JS63|MURC_BACC0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763737|sp|C3PBF0|MURC_BACAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763738|sp|C3L9Z3|MURC_BACAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763739|sp|C1EV43|MURC_BACC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30259434|gb|AAP28622.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Ames]
 gi|47505383|gb|AAT34059.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181503|gb|AAT56879.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           Sterne]
 gi|51974288|gb|AAU15838.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L]
 gi|118419050|gb|ABK87469.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str.
           Al Hakam]
 gi|164714558|gb|EDR20077.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0488]
 gi|167513809|gb|EDR89177.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0193]
 gi|167530843|gb|EDR93545.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0442]
 gi|170129586|gb|EDS98449.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0389]
 gi|170670301|gb|EDT21041.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0465]
 gi|172083012|gb|EDT68074.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0174]
 gi|190560517|gb|EDV14494.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994391|gb|EDX58346.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W]
 gi|196025066|gb|EDX63736.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108]
 gi|196028276|gb|EDX66885.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99]
 gi|218539138|gb|ACK91536.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820]
 gi|225790517|gb|ACO30734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 03BB102]
 gi|227004616|gb|ACP14359.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. CDC
           684]
 gi|228596498|gb|EEK54164.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|228659557|gb|EEL15205.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201]
 gi|228689674|gb|EEL43482.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42]
 gi|228811423|gb|EEM57761.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228829920|gb|EEM75540.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842329|gb|EEM87423.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229266987|gb|ACQ48624.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0248]
 gi|298723716|gb|EFI64445.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 110/378 (29%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              +++  +           G    F   + +    +     + V    +D F     G 
Sbjct: 207 EELQKIQAKVP---VIFYGFGEDNDFQ-ARNIQKRTDGTIFDVFVRNTYYDTFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D   V   L     V  RF       +   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
              ++  R       I+ VF         K       +L  AD   + D   + R    E
Sbjct: 321 NATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|315282543|ref|ZP_07870931.1| UDP-N-acetylmuramate--alanine ligase [Listeria marthii FSL S4-120]
 gi|313613809|gb|EFR87565.1| UDP-N-acetylmuramate--alanine ligase [Listeria marthii FSL S4-120]
          Length = 447

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 143/416 (34%), Gaps = 60/416 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG  +   +                        +G  + ++EA  +   +H L
Sbjct: 126 IRPTSYLIGDGTGSGT------------------------KGAEYFALEACEYQ--RHFL 159

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 160 AY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--AELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
             +          + +F   K V       +  +   G+    F  P  G+  V NAL  
Sbjct: 213 TLDIPIIYFGFDEENEFQ-AKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V   L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVEAVKNELKTFEGVKRRFSI--TEKANQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G   I++ +  E ++        + V++  G G   V       +K+ +D ++I
Sbjct: 390 TKGNHIIKEEHTEELLKY------PEAVILFMGAG--DVQKFQAAYEKV-LDNEVI 436


>gi|269964685|ref|ZP_06178923.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio alginolyticus 40B]
 gi|269830584|gb|EEZ84805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio alginolyticus 40B]
          Length = 452

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 120/360 (33%), Gaps = 29/360 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ +S +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLEAIKRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D    +V +R           G  G +   K V       +  
Sbjct: 207 LV-RTVPGNGLILAPKQDQALADVFER--GCWTEKQFSGVDGDWQAHKLVLD---GSKFD 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++++ +      + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VALQDEKVGTVEWNLVGDHNVDNALMAIAAARHVGVTPDLACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
             +G  +Y D+AH   ++E+ +  +R     + I+           +      +A  L  
Sbjct: 321 E-QGVTVYDDFAHHPTAIELTVGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAESLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +   +      + I  +     P F++   +   A    +E     D ++V   G
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQCTQ--PAFVDADIDNFVA--KIVERARPGDQILVMSNG 435


>gi|295688559|ref|YP_003592252.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
 gi|295430462|gb|ADG09634.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
          Length = 470

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 107/308 (34%), Gaps = 31/308 (10%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++        + ++ +   F    A+    K P  I+A+TGT+GKS+  + +  +
Sbjct: 79  HPKPHWTVQKAKAAGVEILGDIELFARTVAAAPVHKRP-KIIAITGTNGKSTTTALIGHL 137

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           C  +G  +   G                         L      G     +E SS+ LD 
Sbjct: 138 CASAGRDTRIGGNIG-------------------QGVLGLEDMHGGAVYVLELSSYQLDL 178

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   A    N+  DH+D H     Y  AK R+F     K   AII  DD + +++
Sbjct: 179 --TSSLHPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLNQ-GKGDTAIIGVDDPWCQQI 235

Query: 257 MKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 A  R +     GK +      L+ V      ++V   VE  D      LPG   
Sbjct: 236 CTEITAANRRTIWPISAGKAMGRGVYALQGVLYDATGERV---VEVADLLRARSLPGRHN 292

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A     AIGI     ++ L     +  R E VG   +   +    A  +++   
Sbjct: 293 WQNAAAAYAAARAIGIPMQDAVDGLMTFPGLAHRMETVGKIGKVRFVNDSKATNADAARQ 352

Query: 372 ILKNIRTI 379
            + +    
Sbjct: 353 AMSSYPKF 360


>gi|254670208|emb|CBA05358.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha153]
          Length = 458

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 118/370 (31%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   I        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL         G+D     E L     
Sbjct: 265 A----DGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHAGVDIQTACEALSAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 321 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 379

Query: 402 MGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
              +  +L  AD            D     AE +  + G +  G   +A I   ++    
Sbjct: 380 KAALPESLKGADQVFC---YAGGVDWN--VAEALAPLGGKLHVGKDFDAFIAEIVKHTEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|315639620|ref|ZP_07894760.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
 gi|315484581|gb|EFU75037.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
          Length = 454

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 108/284 (38%), Gaps = 25/284 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +E SS  L    +          TN+   HIDYH ++  Y  AK R+ + +  K+ 
Sbjct: 166 DELVMELSSFQLM--GITDFHPEIAVITNIYEAHIDYHGSRPEYVQAKWRIQKNMTDKDY 223

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKDFD 301
             I +       E+ + A +    V+    +G+     ++   +  K Q+ +SV+     
Sbjct: 224 LVINWN----QTELRELAKSTKATVVPFSTEGQVDGAYEIDGQLFFKGQLIMSVD----- 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG+  V NAL A  +     +    +   L +   VP R ++VGT   G   + +
Sbjct: 275 -ELGVPGQHNVENALAAIAVASLKQVRPEAIKAALSQFTGVPHRTQYVGT--HGDVRFFN 331

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            +  +NSL   +         + +V+   G DR      ++  +    A +         
Sbjct: 332 DSKATNSLATRMALGG--FDHQKLVLLAGGLDRGNSFDELIPDLKGIKAIVLF------- 382

Query: 422 SEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  +K+  A    GIP      N   A+  A  +    D +++
Sbjct: 383 GQTKDKLADAAQKAGIPIIKFSENVESAVPLAFTLSEPGDTILL 426


>gi|300118069|ref|ZP_07055817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
 gi|298724380|gb|EFI65074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
          Length = 243

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 22/170 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 1   MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNIKEGNLFVPII--RVKDGHDY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       T     PI+ VD T   L   A     +    ++ 
Sbjct: 53  VKEAMDNGAVASLWKKSYG------TPPKGVPIIFVDETLFALQQLAQFYRREINVKVIG 106

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRL 162
           +TG++GK++V   ++ I        +  G  + QIG   TI    ++   
Sbjct: 107 ITGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEF 156


>gi|283850516|ref|ZP_06367804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
 gi|283574087|gb|EFC22059.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
          Length = 442

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 123/400 (30%), Gaps = 71/400 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V+S        +  + +     VV          AS    +    I+AVTG++G
Sbjct: 74  AGADLVVLSPGIRAASLTDCLAACPGAQVVSEL-----ELASWFTAEP---IVAVTGSNG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  + + +G   F  G   T  S                     L+      V
Sbjct: 126 KTTTVMLISHLLEAAGRKVFTGGNIGTPLSEYV------------------LAGDPADVV 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L   R    +   G   N   +H+D+H     Y +AK+ LF+        A 
Sbjct: 168 VLEVSSFQLQLVRT--FRPRVGVLLNFSPNHLDWHADLDEYLDAKLNLFK--------AQ 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D A   E ++       R LS G                 + V  +  G+       
Sbjct: 218 RPGDLALVPEELRETLAG--RTLSKG-----------------EVVWFAPSGRFHCPR-- 256

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     N   A   C   G+         E     P R + +G   RG     D   T
Sbjct: 257 LAGLHNRQNMEAAYLACQPFGVTEETAKAAFESFAPAPHRLQIIGEK-RGVLFVDDSKAT 315

Query: 366 S-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +  ++E  LK+           +   G  +      ++  +   +A + +          
Sbjct: 316 TVAAMEAALKSFDRPVR-----LLCGGVWKGGDLAALLPLLKGKVASVGLFGAS------ 364

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +I      G      +  +  A+          DV+++
Sbjct: 365 -REIFEAAWAGQVPLFYEPTQKAAVTRLFAEAVPGDVILL 403


>gi|296314257|ref|ZP_06864198.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria polysaccharea ATCC 43768]
 gi|296839054|gb|EFH22992.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria polysaccharea ATCC 43768]
          Length = 458

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 123/370 (33%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHRH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +    H  +V
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQV 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 261 GEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                 +L  AD            D +   AE +  + G +  G   +A +   ++    
Sbjct: 380 KAALPASLKDADQVFC---YAGGVDWD--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|326315568|ref|YP_004233240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372404|gb|ADX44673.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 672

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 155/417 (37%), Gaps = 56/417 (13%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           ++L A R    +   +LA+TGT+GK++V S    + + +G S    G    I     D  
Sbjct: 273 MALAALRESHGYAPAVLAITGTNGKTTVTSLTGLLVECAGRSVAVAG---NIGPTLLDTL 329

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L +A             +E SS  LD     G +  A +  N+ +DH+D+H 
Sbjct: 330 GRHLDADTLPQA-----------WVLELSSFQLD--GATGFEPTAATVLNITQDHLDWHG 376

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------------RAH-----NAG 264
             QAY  AK R+F +        ++  +DA   +++             RAH     +  
Sbjct: 377 DMQAYARAKARIFGQ----SGLMVLNREDAAVMDMLPPPVRVKLQKPQLRAHVTFGADMP 432

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPG-------EFQVYNA 315
            R    G +        V A  + +    T S   +D      +P             NA
Sbjct: 433 QRPGDFGIETVNGMAWLVRAQESDETAKRTRSHAEEDLHIQRLMPADALRIRGRHNAVNA 492

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  L  A G   A +L  L +    P R E +G  +     Y D +  +N +   +  
Sbjct: 493 LAALALAHAAGCPFAPMLYALREYRGEPHRVEPLGRVNEVE--YFDDSKGTN-VGATVAA 549

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +  + + R +VV   G  + Q   P+   ++  +    ++  D P      +IRA +   
Sbjct: 550 LGGLGADRRVVVILGGDGKGQDFSPLAMPVSRYVRAAVLIGRDAP------QIRAALRDA 603

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               ++     EA+R A +  +  D ++       +  +  N E +  V  + ++ +
Sbjct: 604 GVPLVDAPTLPEAVRLAAQRAHAGDAVL-MSPACASFDMFRNYEHRAEVFREAVQAL 659


>gi|254804973|ref|YP_003083194.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha14]
 gi|254668515|emb|CBA05892.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha14]
          Length = 458

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 121/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHRH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTVVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL        +G+D     E L     
Sbjct: 265 A----DGSFDVLLDGKTAGRVKWDLIGRHNRMNALAVIAAARHVGVDIQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                ++L  AD            D     AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPVSLKDADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|222151005|ref|YP_002560158.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
 gi|254766053|sp|B9EB51|MURD_MACCJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222120127|dbj|BAH17462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
          Length = 445

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 126/351 (35%), Gaps = 44/351 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            +IL +TGT+GK++V S +  + +    +    G    ++S          +   L   L
Sbjct: 111 SSILGITGTNGKTTVTSLIGDMFKAHEHAGLLCGNIGFVASK---VAQNAGAHDTLVMEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    +      TN+   H+DYH  QQ Y +AKM++ 
Sbjct: 168 SSFQLMGIQEF-----------------RPHIALITNIYSAHLDYHGNQQNYIDAKMQIT 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTI 293
           +    ++   +I+ D    +  + + +N   +V+      K          ++   +  I
Sbjct: 211 KNQTSED--YLIFND---KQRTLLQNYNIKSKVVYFSTDEKVEGAYIDQNKVYFYDEFII 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            V+         LPG   + N L +       GID+  + + L+    +  R +FV T +
Sbjct: 266 DVKD------IVLPGVHNLENVLASIAAAKLAGIDNIHICDTLKTFEGIKHRLQFV-TET 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G + Y + +  +N+L      + +            G DR  G   +   I  D     
Sbjct: 319 DGVK-YYNDSKATNTLATSF-ALDSFHQPTHW--LAGGLDRGNGFEELDTHI--DHVKHM 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +       E  EK+ A        +    +  +A+      + + +V+++
Sbjct: 373 YI-----FGETTEKLTAFAAQHHIPYTICKDVTDAVLKTASYVERGEVVLL 418


>gi|187926155|ref|YP_001892500.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|241665643|ref|YP_002984002.1| cyanophycin synthetase [Ralstonia pickettii 12D]
 gi|187727909|gb|ACD29073.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|240867670|gb|ACS65330.1| cyanophycin synthetase [Ralstonia pickettii 12D]
          Length = 886

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 131/378 (34%), Gaps = 32/378 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TGT+GK+ VA  V Q+ Q SG  +             Q                 
Sbjct: 487 PIVGITGTNGKTVVAKLVAQMLQLSGKHTGLGCSDGLYLDRRQVESGARTDRAAWDACHR 546

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI-DYHQTQQAYFNAKMRL 233
            L ++ V     E+ S  +    L   +   G  TN G  DH+ D++   +    + +R 
Sbjct: 547 ILMNRAVEAAVFESDSGMILSQGLPYDRCQVGVVTNFGKPDHLGDFYVEDEDRMVSVLRT 606

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +++ K    ++ A DA    +++ A      V+     G    +    A   +     
Sbjct: 607 QIDVVLKTGVGVLNAADA---RLVEMAELCDGEVIFFALSGDLEAIAAHRAAGKRAVFVR 663

Query: 294 S--------------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                           +       +     FQ+ N L A     A+GI + L+   +   
Sbjct: 664 DGKVVLATGPTELALADVSAIPLTYDGRVPFQLENVLAAVATGWALGISNDLMRAGIMTF 723

Query: 340 H--VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V     F      G  I VD AH +++LE +   +    + R  +VFG G  R   
Sbjct: 724 DVGQVDVPGRFTLFQHHGATIVVDDAHNASALEALAAALDNFPAQRRTLVFGAGLQRRDE 783

Query: 398 KRPIMGKIALDLADIAIVTDDNP--RSEDP--EKIRAEIIHGIPG-------FIEKGNRI 446
                G +     D  ++ +D    R++     + RA +  G+          +E   R 
Sbjct: 784 DLVAQGTVIGQTFDRVLLCEDASVKRTDAEFDRQARALLKQGLQAGGRVAEVVVEGAKRR 843

Query: 447 EAIRTAIEMLNKQDVLVV 464
           + +  A+  +   D+LV+
Sbjct: 844 DVVDAALSQVTAGDLLVL 861


>gi|320011285|gb|ADW06135.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 493

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 146/439 (33%), Gaps = 61/439 (13%)

Query: 71  IVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +VV++     D     A   +  P+    +        A RL G      LAVTGT+GK+
Sbjct: 94  LVVTAPGWKPDKPLFLAAAEAGVPVW--GDV-----ELAWRLRGPDAAPWLAVTGTNGKT 146

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  I + +GL +  +G                        +L        T+  +
Sbjct: 147 TTVRMLASILEAAGLRTAAVGNIGV--------------------SLLDAVLGDETYDVL 186

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                    H    ++  +G+  NL  DH+D+H +   Y   K R++E         +  
Sbjct: 187 AVELSSYQLHWAPSLRAHSGAVLNLAPDHLDWHGSMAGYAADKGRIYEGNSV---ACVYN 243

Query: 248 ADDAYSKEVMKRA---HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
           A DA ++++++ A           ++G  G    L  V  I   +      + +  +   
Sbjct: 244 AQDAATEDLVREADVEEGCRAIGFTLGTPGPSQ-LGLVDGILVDRAFVADRQKQAQELAE 302

Query: 303 --LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                 P    + NAL AA L  A G+  A V + L        R E V   +    I  
Sbjct: 303 VGDVDPPAPHNIANALAAAALARAFGVPPAAVRDGLRAFRPDAHRIEHVADVAGVTYIDD 362

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A  +++ E  L            +V+  GG         +   A       ++     
Sbjct: 363 SKATNTHAAEASLAAYEP-------IVWIAGGLAKGATFDGLVTGAAKRLRGVVLM---- 411

Query: 421 RSEDPEKIRAEIIHGIPGF-IEKGNRIE------AIRTAIEMLNKQDVLVVAGKGHETVH 473
              D   I+  +    P   +   +R +      A+  A  +    D +++A     ++ 
Sbjct: 412 -GADRALIKEALTRHAPEVPVVDLDRTDTGAMPAAVLEAARLARPGDTVLLA-PACASMD 469

Query: 474 IVTNGEKKMSVDCDIIREI 492
           +  N  K+     D +R +
Sbjct: 470 MFVNYNKRGEAFADAVRRL 488


>gi|75760821|ref|ZP_00740837.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899844|ref|YP_002448255.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842]
 gi|228903207|ref|ZP_04067341.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           4222]
 gi|228941870|ref|ZP_04104416.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228967789|ref|ZP_04128805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228974796|ref|ZP_04135361.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981390|ref|ZP_04141690.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           Bt407]
 gi|226711859|sp|B7IKV4|MURC_BACC2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74491675|gb|EAO54875.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540867|gb|ACK93261.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842]
 gi|228778590|gb|EEM26857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           Bt407]
 gi|228784924|gb|EEM32938.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228791943|gb|EEM39529.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228817804|gb|EEM63883.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228856489|gb|EEN01015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           4222]
 gi|326942473|gb|AEA18369.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 110/378 (29%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    S+         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMSQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFADINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              +++  +           G    F   + +    +     + V    +D F     G 
Sbjct: 207 EELQKIQAKVP---VIFYGFGEDNDFQ-ARNIQKRTDGTIFDVFVRNTYYDTFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D   V   L     V  RF       +   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
              ++  R       ++ VF         K       +L  AD   + D   + R    E
Sbjct: 321 NATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|282875841|ref|ZP_06284708.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           SK135]
 gi|281294866|gb|EFA87393.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           SK135]
 gi|329737161|gb|EGG73415.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU028]
          Length = 437

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 127/360 (35%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +            S  +  +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG--------LPGSDYFAFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H            TN+  DH DY +     ++A    F+ +
Sbjct: 155 ------------RRHFLSYH------PDYAIMTNIDFDHPDYFKNIDDVYDA----FQHM 192

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            L  +   I + DD Y +++     +    V   G+ +   I+ K +       Q  + +
Sbjct: 193 ALNVKKGIIAWGDDEYLRKL-----DVDIPVYYYGFKETDDIYAKNIQITEKGTQFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G   + NAL    +     ++   + E L     V  RF     +++
Sbjct: 248 KGEFYDQFLSPQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VLVDDYAHHPREISATIETARKKYPKKDVVAVFQPHTFSRTQAFLNEFAESLSKADQV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +      E+   +   ++I+ I G             +I++L K D  V++  G G 
Sbjct: 366 FLCEIFGSIRENTGDLTIEDLINRIDGSTLID------ENSIDVLEKFDNAVILFMGAGD 419


>gi|307706011|ref|ZP_07642834.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK564]
 gi|307620430|gb|EFN99543.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK564]
          Length = 444

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 94/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G      ++         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASELLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +D   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QDLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|157960514|ref|YP_001500548.1| UDP-N-acetylmuramate [Shewanella pealeana ATCC 700345]
 gi|157845514|gb|ABV86013.1| UDP-N-acetylmuramate [Shewanella pealeana ATCC 700345]
          Length = 461

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 115/365 (31%), Gaps = 36/365 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK+S +S +  I +  G     +     +      +     SP ++ +
Sbjct: 105 PQRWVLAVAGTHGKTSTSSMLAWILEDCGYEPGFL--IGGVPQNFGVSARLGGSPFFVVE 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                       +       NL  DH D     +A    +  
Sbjct: 163 ADEYDSAFFDKRSKFVHY------------QPRTLVINNLEFDHADIFDDLKAIQR-QFN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   I  AD    ++V+                G       V    +  +  
Sbjct: 210 HVIRTVPGEGKIIWPADANSVQQVIDM--GCWSEQEQYHLSGNSQGWYAVNLTEDGHKFE 267

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+    L + L G+  + NA++A      +G+     +  L +      R E + T
Sbjct: 268 VFFDGESQGILDWQLIGQHNIENAVMAIAAARHVGVKPEAAIAALTQFAPPKRRMELLDT 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
              G  +Y D+AH   ++   L  +R       I V           G        +L L
Sbjct: 328 -VNGIEVYDDFAHHPTAITTSLNGMRARVGSGKITVILEPRSNTMKSGVHKDTLANSLSL 386

Query: 410 ADIAIVTD------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           A  A +        D   +     I  E+++ I   +E+ +            N  D ++
Sbjct: 387 ASNAYLYQAGNIDWDISAAMSCASIPVEVLYDIDEIVERVS---------AQANSTDTII 437

Query: 464 VAGKG 468
           V   G
Sbjct: 438 VMSNG 442


>gi|313633042|gb|EFR99962.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria seeligeri FSL
           N1-067]
          Length = 407

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 141/418 (33%), Gaps = 58/418 (13%)

Query: 59  FIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           F    I  G   I  ++   + ++    +    P++      KFL               
Sbjct: 13  FSADNIKSGLTIIAGNAFPDTHEEIERAMELGIPVI---RYHKFLGQLIDGY------TS 63

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +      +S+ IG  +   +                      
Sbjct: 64  IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGT---------------------- 101

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  + ++EA  +   +H L   K      TN+  DH DY ++    FNA    FE L
Sbjct: 102 --KGAEYFALEACEYQ--RHFLAY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 152

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+    D    E+ K   +        G + +F   K V       +  +    
Sbjct: 153 GKQVKKAVFALGDDV--ELRKLTLDIPIIYFGFGEENEFQ-AKNVIKETTGTRFDVYHRD 209

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    F  P  G+  V NAL    LC   G+    V   L+    V  RF    T+    
Sbjct: 210 EFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVKRRFSI--TDKGNQ 267

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH  + +   +   R      +I+ VF                 +L+LAD   +
Sbjct: 268 VLVDDYAHHPSEIRATVNAARQKYPDKKIVAVFQPHTFTRTRTFLQGFADSLNLADEVYL 327

Query: 416 TDD--NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D   + R +      A++ H   G   I++ +  E ++          V++  G G 
Sbjct: 328 CDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PDAVILFMGAGD 379


>gi|310819950|ref|YP_003952308.1| UDP-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309393022|gb|ADO70481.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 488

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 120/387 (31%), Gaps = 46/387 (11%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           F +   +    +    ++A  GT GK++ +S +  +   +G     +     ++     N
Sbjct: 109 FPAALGALFLKQSHSVVVA--GTHGKTTTSSLMAHVLVDAGKDPSFL--VGGVTQNYAGN 164

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                 P ++ +   Y      T    + S     Q R           T++  DH D  
Sbjct: 165 YRVGKGPHFVVEGDEY-----DTAYWDKGSKFLHYQPRT-------AILTSVEFDHADIF 212

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +    Y  A    F  L+P E   ++ A    +  +           ++          +
Sbjct: 213 RDLPHY-EATFEKFVRLIPPEGQLVVCAAYPNALRIAGGTRARVVTYVAREGAQADYTPR 271

Query: 281 KVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           KV       +  +   G         L G   V NAL        +G+    +   L   
Sbjct: 272 KVSFGAEGARFEVVERGTVLGTARMELTGLHNVENALSVIAAARGLGLSFEEIARGLSSF 331

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG-GDRDQG 397
             V  R E  G    G  +  D+AH   ++   +  IR      R+  +F        + 
Sbjct: 332 RGVKRRQEVRGEPG-GILVVDDFAHHPTAVRETIAAIRQRYPERRLWALFEPRSNTSRRN 390

Query: 398 KRPIMGKIALDLADIAIV-------------TDDNPR---SEDPEKIRAEIIHGIPGFIE 441
                   A   A  A +               D PR   +   + I+A+    +P  +E
Sbjct: 391 IHQEDYAHAFTGAARASLKVPERHDKVPTHEELDVPRLCEALKAQGIQADHASDVPSLLE 450

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  R EA+R         DVL+V   G
Sbjct: 451 RVTR-EALR--------GDVLLVMSNG 468


>gi|148988565|ref|ZP_01819998.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP6-BS73]
 gi|168493422|ref|ZP_02717565.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC3059-06]
 gi|225854964|ref|YP_002736476.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           JJA]
 gi|254766026|sp|C1CFA5|MURC_STRZJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147925766|gb|EDK76841.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP6-BS73]
 gi|183576266|gb|EDT96794.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC3059-06]
 gi|225723347|gb|ACO19200.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae JJA]
          Length = 444

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFSGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|62900456|sp|Q5FUJ7|MURD_GLUOX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 448

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 111/339 (32%), Gaps = 58/339 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GKS+  + +  +   +G      G   T S                  AL  L
Sbjct: 115 IAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGTAS-----------------LALPLL 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  + +          RLD     A    NL  DH+D H     Y  AK  +F+ +
Sbjct: 158 PDDGVYVIEM----SSYMLERLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDNM 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P +  A+I  DD + + +  +  + G +V+ +       +                   
Sbjct: 214 GPDD-LAVIGMDDDWCRAIASQVASRGVQVVELDADALPPYDGPA--------------- 257

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG     N   A  +   +G+D A +   L+    +  R + V        
Sbjct: 258 --------LPGRHNAQNVGAALTIASHLGLDEAAIRTGLKSFPGLEHRLQKVAECDGVSF 309

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I    A  + ++   L            V++  GG    G    +      +A   ++  
Sbjct: 310 INDSKATNAEAVSKALAA-------YDKVMWIAGGVAKAGGIESLAPFFRHIAQAFLI-- 360

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                +D + + A +      F + G   +A+  A +  
Sbjct: 361 ----GQDADVLAATLETHGVPFQQCGTLEKAVPAAFKAA 395


>gi|308048066|ref|YP_003911632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
 gi|307630256|gb|ADN74558.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
          Length = 433

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 91/436 (20%), Positives = 154/436 (35%), Gaps = 72/436 (16%)

Query: 36  DSRHIQAG--WI---F--VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           DSR    G   +   F  VA+     DG       +AQ A+ +VVS    L+  +     
Sbjct: 35  DSRANPPGADTLARDFAHVALQTGPFDG-----DVLAQ-AKRLVVSPGIDLRTPALAQAI 88

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              + VV +   F               ++A+TG++GKS+V + V  + Q  G+S    G
Sbjct: 89  AAGVEVVGDIELFARAA--------DAPVVAITGSNGKSTVTTLVGHLAQACGVSVGVGG 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T +                      L  QG     +E SS  L+  R   +    G+
Sbjct: 141 NIGTPA--------------------LDLLGQGHQLYVLELSSFQLETTR--SLPAQVGT 178

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+  DH+D + + +AY +AK+ L+    P+   A+    D  +        ++  R L
Sbjct: 179 VLNVSPDHLDRYDSYEAYRDAKLALY----PQCRIALFNRADHNT------LPSSHPRTL 228

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           S G          V      Q  T  ++ +D      L G     N L A  L  A G++
Sbjct: 229 SFGPDAPDGDNFGVVGDWLMQGQT-RLKRRD---QLTLVGAHNEQNVLAALALGQAAGLE 284

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +L  L+    +P R E V   +    +    A    + +  L  +     GR+ ++ 
Sbjct: 285 MDAMLSALDSYRGLPHRCELVAERAGVRYVNDSKATNLGATQAALDGLEL---GRVWLI- 340

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
             GGD       ++      LA +  +  D P           I        E  +   A
Sbjct: 341 -AGGDAKGQDLSVLAPALNQLAGLITLGQDGPA----------IAALRSDATEVVSIESA 389

Query: 449 IRTAIEMLNKQDVLVV 464
           +  A +     D++++
Sbjct: 390 VAVAADQARAGDIVLL 405


>gi|225857146|ref|YP_002738657.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           P1031]
 gi|254766027|sp|C1CLL9|MURC_STRZP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225725082|gb|ACO20934.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           P1031]
          Length = 444

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASDLIRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFSGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|170748777|ref|YP_001755037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655299|gb|ACB24354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 454

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 109/321 (33%), Gaps = 40/321 (12%)

Query: 67  GAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           G  A V+S    L      +S  +  +  + ++ +   F     +R  G      +A+TG
Sbjct: 65  GFAAFVLSPGVPLTHPEPHWSVRLARDAGVAIIGDIELFCRERRARAPG---APFVAITG 121

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  + +  +  + G      G   T                     LS       
Sbjct: 122 TNGKSTTTALIAHVLAQGGRDVQMGGNIGT-------------------AILSLEPPAAD 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  +D      +    G   N+  DH+D H T + Y   K    E L+    
Sbjct: 163 RVHVIEMSSFQIDL--TPSLDPSVGVLMNITPDHLDRHGTMEQYAAIK----ERLIQGAG 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---D 299
            A++  DDA S+ +  R      RV           +    A+  +  +    +G    D
Sbjct: 217 LAVVGVDDAPSRAIADRRGADLVRV-----HVPHGDVLCTDALTVRDGIVREPDGTALAD 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            + +  L G     NA VA  +  A+ +    +   L     +P R E VG       + 
Sbjct: 272 VNGIGSLRGAHNWQNAAVAVAVARALDLSPEQIQAGLTSFPGLPHRMEEVGRRGHVLFVN 331

Query: 360 VDYAHTSNSLEMILKNIRTIT 380
              A  ++S E  L   R I 
Sbjct: 332 DSKATNADSTEKALTAFRDIH 352


>gi|307704455|ref|ZP_07641365.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK597]
 gi|307621975|gb|EFO01002.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK597]
          Length = 444

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 94/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G      ++         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASELLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QELGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|332187398|ref|ZP_08389136.1| mur ligase family, catalytic domain protein [Sphingomonas sp. S17]
 gi|332012559|gb|EGI54626.1| mur ligase family, catalytic domain protein [Sphingomonas sp. S17]
          Length = 461

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 134/409 (32%), Gaps = 43/409 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           V+S   L   SA +    P +V  N    +R   +   + L+ +     + V GTSGKS+
Sbjct: 65  VTSPDQLVIASAAVEETVPDIVAANRLGCSRATRAQMLAGLFNE-SALPIGVAGTSGKST 123

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  I   +G          T  + A      +P   +     S L   G   VS  
Sbjct: 124 VTGMIAFILHATGRDP-------TAMNGAVMKDFVSPDSPFA----SALVGAGDAFVSEV 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S G     +           N+  DH    ++ +        LF     +    +  A
Sbjct: 173 DESDGS----IALYNPAIAVLNNVSLDH----KSLEELR----TLFGGFAGRARHVVANA 220

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            DA +  ++    N     +        +  + +          +   G  +     +PG
Sbjct: 221 GDAETAALLADIPNLTTFAV---EGAADLVAEALKPEPFAIGFDLVTGGAGYHVRLSVPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL A G  +A G+     +  +E+   +  RFE VG  + G  +  D+ H  + 
Sbjct: 278 RHNVSNALAAIGASVAAGVPLIDAIRAVERFTGLKRRFEKVG-EANGVTVIDDFGHNPDK 336

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDR--DQGKRPIMGKIALD--------LADIAIVTDD 418
           +   L  +     GR++++F   G       +  ++  IA          + D A     
Sbjct: 337 IAATLDTLHAF-PGRLLILFQPHGYGPLKVMRTELVDSIAARMKLGDVLAMPDPAYFGGT 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             R      I A++           +R  A    +      D +VV G 
Sbjct: 396 VAREVTSADIVADLRAKGVDARHIADRAAAADALVAEAKPGDRIVVMGA 444


>gi|315613486|ref|ZP_07888394.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           ATCC 49296]
 gi|315314482|gb|EFU62526.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           ATCC 49296]
          Length = 444

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 106/352 (30%), Gaps = 43/352 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG   I+  +A+   +      ++   +      +FL  F            + V G  G
Sbjct: 60  QGDVEIIAGNAFRPDNNVEIAYADQNGISYKRYHEFLGSFMRDFV------SMGVAGAHG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S    +  +      +SF IG  +   S      +                       
Sbjct: 114 KTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD------------------- 154

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E   H +  H            TN+  DH DY  + +  FNA     +++        
Sbjct: 155 --EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLF 203

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           +Y +D    E+ K   NA         +        +         T+   G++   F  
Sbjct: 204 VYGEDP---ELRKITANAPIYYYGFEAEDNDFVASDLLRSTTGSTFTVHFRGQELGQFHI 260

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G   + NA    GL    G D  LV EHL+    V  RF     N     I  D+AH
Sbjct: 261 PTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--TVIIDDFAH 318

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +   L   R    S  I+ +F                 AL+ AD   +
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|313682069|ref|YP_004059807.1| mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154929|gb|ADR33607.1| Mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 480

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 141/369 (38%), Gaps = 44/369 (11%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+     AS         I+ VTG+ GK+S+ +F+ Q+  +           +T+    +
Sbjct: 147 RQAQGKIASMKD----LTIVCVTGSYGKTSMKNFIAQVLGQKFNVYATPRSVNTLGGIIR 202

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D   + P    +     Y+   G   V    +   L       +         +G  H++
Sbjct: 203 DVNESLPENTQV-----YICEAGAREVGDIYAIAQL-------LHPQIVVVGKVGPQHLE 250

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y +T +     K+ +      K++       +               +V   G       
Sbjct: 251 YFKTLERIQRTKLEIIHSNRLKKAFIHTSVTNE-----------PHEKVTFFGDD----- 294

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++ + A        +++EG++  F   + G FQ  N   A  +   +G+ S  ++  +EK
Sbjct: 295 VRNLKATLEGIDFDLNIEGEERHFHTSVLGGFQTININAAILIASEMGMSSDEIVGAVEK 354

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQ 396
           L  V  R E +     GG+I +D  +  N ++ +L+ +R  ++  GR ++V     +  +
Sbjct: 355 LKSVEHRLERIDA---GGKIILDDGYNGN-IDGMLEGVRLCSLHPGRKVIVTPGLVESTE 410

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                +      + DIAI+T     S +  +   E+   +P  I   ++ + ++T  E+ 
Sbjct: 411 ELNSELISAINGVFDIAIITG----SLNAAQFDKELR--VPQKIMLADKSQMVKTLGEVT 464

Query: 457 NKQDVLVVA 465
              D+++ A
Sbjct: 465 KAGDIILFA 473


>gi|312136986|ref|YP_004004323.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224705|gb|ADP77561.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 476

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 149/421 (35%), Gaps = 45/421 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
            +++            +   PI++V+      +            N   + +TGT+GKS+
Sbjct: 58  ALITQNPKGNSLEYAKKLKVPIILVNKIELASAFAIKWTIKNFAPNTYRVVITGTNGKST 117

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  I   +G  +F    T+T +    +  +       LA+       + + ++ +E
Sbjct: 118 TTHMIYHILTHAGKKAF----TNTDAKSEFNTLIDPMVAKLLAE---KAKKENLEYLVIE 170

Query: 189 ASSHGLDQHRL---------DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            S       RL           I       TN+  DHI    + +  F       + L  
Sbjct: 171 VSEVQGWLDRLMKDHAYLMTKSINPNVVVVTNVALDHIGLVNSIEEVFEETSGAVKAL-- 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  A++  D+ +++++ K   N   +V   G        K          + ++ +   
Sbjct: 229 EKGFAVLNYDNEFTRKMAK-LTNKNVKVFFYG--------KNCPVTFKSGGIYVNNDLFI 279

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P   E+ + N L A   C+ + I   ++ + +     +  RF  +    +   I 
Sbjct: 280 KKEELPFKSEYFIQNTLAAISACLCLNIPPDIIKKGILTYKPLKRRFSILC---KKPLII 336

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAI 414
            D+AH  + ++M +K+ + +T  ++ VV    G R +    +  +              +
Sbjct: 337 DDFAHNPDGIKMAIKSAKKLTKNKLWVVCAIRGSRGKIINKLNAESLSKTLKNIENYEVV 396

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGN---R-----IEAIRTAIEMLNKQDVLVVAG 466
           +T+ +   ++  K++ E        +EK N   R       A+   +    K D +++ G
Sbjct: 397 ITNSDDVVDNLNKVKKEEEKTFLKTLEKYNINYRFHKKLKTALEETLTNCKKDDTILLIG 456

Query: 467 K 467
            
Sbjct: 457 A 457


>gi|326202129|ref|ZP_08191999.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987924|gb|EGD48750.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 465

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 132/394 (33%), Gaps = 52/394 (13%)

Query: 83  SATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           +  +R + P LV  V+N  +  S          P  + AVTG+ GK++  + + +I    
Sbjct: 84  TPGMRPDLPELVQAVNNGAELTSEM-EVFLKLCPAQVFAVTGSDGKTTTTTLIYKILSEE 142

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRL 199
           G + +  G                         LS +     T   V E SS  L   R 
Sbjct: 143 GYNCWLGGNIG-------------------IPLLSKIDEVAETDKVVLELSSFQLMTIR- 182

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TNL  +H+D H++ Q Y +AK  +F      E    +  D+  +K     
Sbjct: 183 --DCPSVAVVTNLSPNHLDVHKSLQEYIDAKKNIFIYQKENEKLV-LNYDNEITKSFNYE 239

Query: 260 AHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A         +   +   ++   V  +    + T+ VEG        +PG   + N + A
Sbjct: 240 ARGEHVYFSRLSNLEEGVVYQDGVIMVKKGNESTVIVEGD----KIKIPGVHNIENYMAA 295

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-SLEMILKNIR 377
               I   +    + +     + V  R E V   +        Y  + + S    +  ++
Sbjct: 296 TAATIDY-VKPETIAKIATTFNGVEHRIELVRELNG----IKFYNSSIDSSPSRTIAALK 350

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-------EKIRA 430
           T  +   +++   G D+      I   IA  +  + ++     R E+          I  
Sbjct: 351 TFKNK--VILIAGGKDKGIPYDSIGEIIAEKVKCLLLIGATASRIEEAYKNYLQQRDIDN 408

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           EI       I   +  E ++ A       D +++
Sbjct: 409 EIE-----IIHCDSYEEVVKEAYGQAKSGDCIIL 437


>gi|86140622|ref|ZP_01059181.1| UDP-N-acetylmuramate--L-alanine ligase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832564|gb|EAQ51013.1| UDP-N-acetylmuramate--L-alanine ligase [Leeuwenhoekiella blandensis
           MED217]
          Length = 449

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 125/366 (34%), Gaps = 46/366 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ ++ +  +     L       T+ +   A++ +             S L
Sbjct: 116 LAVAGTHGKTTTSAMLGHLMAFCKLP-----VTAFLGGIAENYQ-------------SNL 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V VEA        +L        + T++  DH+D +   +A   +  R F   
Sbjct: 158 IQHGEEIVVVEADEFDRSFMQLY---PNIAAITSMDADHLDIYGDAEALHKS-FRDFAAQ 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTI-SV 295
           + ++    +                     ++VG +   ++    +   +      +   
Sbjct: 214 VKEDGVLFVKNGLPLDG-------------ITVGIEDDSVYAALNIKIENGAYHFDLKHP 260

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G   D +  LPG   + NA  A  + +  G  +  + + L     V  RF +    +  
Sbjct: 261 DGLIEDLVLNLPGRHNLSNATTALAMALHYGCPADKLAKALFAFKGVNRRFTYRIKKAN- 319

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    +  +   +R +  + R++ VF                 +L   D  +
Sbjct: 320 EVLIDDYAHHPAEINAVHSAVREMYPNKRVLAVFQPHLFSRTRDFMEDFAASLAQFDELL 379

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IE---MLNKQDVLVVAGKGHE 470
           + D  P  E+P     ++       +    R E I  A +E     +K  V V+ G G  
Sbjct: 380 LLDIYPAREEP---IEDVTSEKLLELIPLTRKEVISKAQLEEKLQASKATVKVMMGAGDI 436

Query: 471 TVHIVT 476
              I+ 
Sbjct: 437 GEEILK 442


>gi|307127726|ref|YP_003879757.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           670-6B]
 gi|306484788|gb|ADM91657.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           670-6B]
          Length = 444

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDIFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEVEGNDFVASDLLRSITGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|16800714|ref|NP_470982.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria innocua Clip11262]
 gi|24212046|sp|Q92BA4|MURC_LISIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16414133|emb|CAC96877.1| murC [Listeria innocua Clip11262]
 gi|313623565|gb|EFR93744.1| UDP-N-acetylmuramate--alanine ligase [Listeria innocua FSL J1-023]
          Length = 447

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 141/420 (33%), Gaps = 59/420 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++       N P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERANELNLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG   T S           +  Y    L+Y                       
Sbjct: 126 IRPTSYLIG-DGTGSGTKDAKYFALEACEYQRHFLAY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 162 ---KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDDV--ELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
           + +        G + +F   K V       +  +    +    F  P  G+  V NAL  
Sbjct: 213 SLDVPIIYFGFGSENEFQ-AKNVKKETTGTKFDVYHRDEFLASFEIPAYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V + L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVDEVKKELKTFEGVKRRFSI--TEKGNQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
               + IV         + +  + G   +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPNKKIVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             G   I++ +  E ++        + V++  G G   V       +K+  +  +  E+L
Sbjct: 390 TKGNHIIKEEHTEELLQY------PEAVILFMGAG--DVQKFQAAYEKVLDNEIVANEVL 441


>gi|307706220|ref|ZP_07643037.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK321]
 gi|307618410|gb|EFN97560.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis SK321]
          Length = 444

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   IY +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFIYGEDA---ELRKITSDAPIYYYGFEAKGNDFVASDLLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +D   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QDLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|255533209|ref|YP_003093581.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter heparinus DSM
           2366]
 gi|255346193|gb|ACU05519.1| UDP-N-acetylmuramate/alanine ligase [Pedobacter heparinus DSM 2366]
          Length = 451

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 100/312 (32%), Gaps = 34/312 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  +AV GT GK++ +S V  +   SG      G T+ +   A +               
Sbjct: 113 QFCIAVAGTHGKTTTSSIVAHVLIDSGY-----GCTAFLGGIASNYNSNFIIGNN----- 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     V VEA     D+  L  +       T++  DH+D +        +     
Sbjct: 163 --------NVVVVEADE--YDRSFLT-LHPDLAVITSMDADHLDIYGDAAHLHESFGLFA 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++L P+ +             V K          SVG   +                 + 
Sbjct: 212 KQLKPQGTL-----------FVRKGLPLTAGLSYSVGQDSQIKGQNIRVEGSKFVFDYVD 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + +  D    LPG+  V NA+ A  + + +GID   +   +     V  RFE++  N+ 
Sbjct: 261 TDLRISDIQLMLPGKHNVENAVAAIAVALKLGIDHHKIKAAIASFTGVKRRFEYI-VNTP 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                 DYAH    L      +R      ++ V+F                  L   D  
Sbjct: 320 DHIYIDDYAHHPEELRACFDAVRQLYPDKKLTVIFQPHLFTRTRDFAAEFAKVLSTVDEL 379

Query: 414 IVTDDNPRSEDP 425
           ++ +  P  E P
Sbjct: 380 LLLEIYPARELP 391


>gi|145627896|ref|ZP_01783697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145639344|ref|ZP_01794950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|144979671|gb|EDJ89330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145271647|gb|EDK11558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|309751218|gb|ADO81202.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2866]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 129/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIELF--------CRTATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N     +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---RLTFGENENQAKHTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+ V   + G R   D   T+    
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVH-QANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     +++ G G   D      + ++      I           D     A
Sbjct: 328 VAALAGLYIEGKLHLLLGGDGKGADFS---ELAELINQPHIICYC-----FGRD----GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   D++++
Sbjct: 376 QLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|237749171|ref|ZP_04579651.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
 gi|229380533|gb|EEO30624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
          Length = 495

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 147/388 (37%), Gaps = 58/388 (14%)

Query: 104 LFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           +FA  L G      +  +++AVTGT+GK++V S    +C+R+G +   +     IS  A 
Sbjct: 103 MFAQALKGLEEGTAYKPDVIAVTGTNGKTTVTSLTGHMCERAGKT---VRLAGNISPAAL 159

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D  L       L                +E SS  L       ++  A +  NL +DH+D
Sbjct: 160 DVLLDVIEKKQLP-----------DVWVLELSSFQL--FTTYTLQANAATVLNLTQDHLD 206

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FI 277
           +H + +AY  AK R+F E    ++  ++  +DA    VMK A +A   V++ G       
Sbjct: 207 WHGSMEAYGEAKARIFGE----KTVRVLNREDA---AVMKMA-SADAPVVTFGTDEPLEP 258

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFL---------------------FPLPGEFQVYNAL 316
               +    + + + +    +D                           + G     NAL
Sbjct: 259 SSFGLHLDRDMEWLAVMSPVEDGIVRRNKKNDAPLEYAVQNLMPAGALKIRGRHNASNAL 318

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  LC AI +  A +L+ L      P R E + T  +      D   T+    +   N 
Sbjct: 319 AALALCRAIHLPFAPLLQALSDYRGEPHRVELIAT-VKTVSYIDDSKGTNVGATVAAVNG 377

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                 + I++   G  +DQ   P+   +A  +  + ++       +D  +I   +    
Sbjct: 378 LGEKGRKNIILIAGGLGKDQDFSPLSEVVAQYVKAVMLI------GKDARQIHDALAETG 431

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             F+   +   A+  A +M    D +++
Sbjct: 432 ASFVYSDSLEHAVGEAAKMAQDNDTVLL 459


>gi|237796978|ref|YP_002864530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
 gi|259509786|sp|C3KVT7|MURD_CLOB6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|229261229|gb|ACQ52262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
          Length = 458

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 123/362 (33%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T                
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  +  +   A         +G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNN-LLVLNKDDDLTNGMENEA---------LGDVLKFSLVEKVYNGAYL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++++GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTMQGKEVCDSKDIKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+     G + Y D   +S S     + +  + S    V+   GG   +     + +  
Sbjct: 319 EFI-REVNGVKYYNDSIASSPS-----RTLAGLNSFERPVILIAGGYDKKIPFKPLAEGG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQD 460
            D   I I+  D        KI++     I         +   +  EA++ A  M  K D
Sbjct: 373 YDKIKILILMGD-----TKNKIKSAFEKVISHKKCEIEIVIVNSMEEAVKVADNMAEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|168183596|ref|ZP_02618260.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
 gi|182673240|gb|EDT85201.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
          Length = 458

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 123/362 (33%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T                
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  +  +   A         +G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNN-LLVLNKDDDLTNGMENEA---------LGDVLKFSLVEKVYNGAYL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++++GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTMQGKEVCDSKDIKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+     G + Y D   +S S     + +  + S    V+   GG   +     + +  
Sbjct: 319 EFI-REVNGVKYYNDSIASSPS-----RTLAGLNSFERPVILIAGGYDKKIPFKPLAEGG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQD 460
            D   I I+  D        KI++     I         +   +  EA++ A  M  K D
Sbjct: 373 YDKIKILILMGD-----TKNKIKSAFEKVISHKKCEIEIVIVNSMEEAVKVADNMAEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|169834096|ref|YP_001694928.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|229620426|sp|B1ICU3|MURC_STRPI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168996598|gb|ACA37210.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 444

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFSGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|332160410|ref|YP_004296987.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607129|emb|CBY28627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664640|gb|ADZ41284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859323|emb|CBX69670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica W22703]
          Length = 444

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 149/400 (37%), Gaps = 52/400 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  +   + +V +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSEAAEAGVEIVGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L K LS L       V +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVP-------------ALNLLKQLS-LQKHENQLVVL 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 164 ELSSFQLE--TTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRIYEN----AKVCVV 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 218 NADDALTMPV----RGADNRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 268

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  +  L+ L     +P RF+ V  ++    I    A 
Sbjct: 269 KLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLVFEHNGVRWINDSKAT 328

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +      +   +  D   I     D    E 
Sbjct: 329 NVGSTEAALDGLP--VDGTLHLLL-GGDGKSADFSGLTRFLQGDHIKIYCFGRD---GEQ 382

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 383 LAELRPEVSQ------LTETMEQAMVLLAKSLAPGDMVLL 416


>gi|301794533|emb|CBW36975.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           INV104]
 gi|332200961|gb|EGJ15032.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA47901]
          Length = 444

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFSGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|163750924|ref|ZP_02158157.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella benthica KT99]
 gi|161329348|gb|EDQ00345.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella benthica KT99]
          Length = 478

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 114/371 (30%), Gaps = 36/371 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LA++GT GK+S +S +  I +  G     +     +      +     S  ++ +A 
Sbjct: 107 RWVLAISGTHGKTSTSSMLAWILEDCGYEPGFL--IGGVPQNFGVSARLGGSAFFVVEAD 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+                       +       NL  DH D     +A    +    
Sbjct: 165 EYDSAFFDKRSKFVHY------------QPRTLVINNLEFDHADIFDDLKAIQR-QFHHV 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------------GYQGKFIH--LK 280
              +P E   I   D    ++V+     +     +             G           
Sbjct: 212 IRTVPGEGKIIWPKDSEAVQQVIDMGCWSEQETYARHSDSDSGIVSGKGSSAADNQGTWS 271

Query: 281 KVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                 +  Q  + ++G+    L + L G+  V NA +A      +G+     ++ L + 
Sbjct: 272 SKLIAADGHQFELFLDGESQGILDWSLIGQHNVENATMAIAAARHVGVKPESAIQALTQF 331

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
                R E +G    G  +Y D+AH   ++   L+  R       I +            
Sbjct: 332 EPPKRRMELIG-EVNGIEVYDDFAHHPTAIATTLQGCRAKVGEAKITIILEPRSNTMKSG 390

Query: 400 PIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
                +A  +  AD A +   +    D E   A+    +    +    ++A+        
Sbjct: 391 VHKDTLAGSMSLADQAYLYQADSIDWDIEAAMAKAELPVSVLYDIDEIVDAVA---SKAK 447

Query: 458 KQDVLVVAGKG 468
             D +++   G
Sbjct: 448 SGDTIIIMSNG 458


>gi|115372723|ref|ZP_01460029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823490|ref|YP_003955848.1| UDP-n-acetylmuramoylalanine--d-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370204|gb|EAU69133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396562|gb|ADO74021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 454

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 151/430 (35%), Gaps = 53/430 (12%)

Query: 69  EAIVVSSAYSL--QDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
             +VVS    L   +F A   +  PI   V+         ASR     P  +  +TGT+G
Sbjct: 72  ALVVVSPGVPLSRPEFKAARAAGVPIWGEVE--------LASRFLSAVP--LFGITGTNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  +   ++  R G  +F  G      S                   + L+ +    +
Sbjct: 122 KSTTTALTGELFSRGGGRTFVGGNLGRPFSE------------------AALTPEAWDAL 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VE SS  L+   +  ++    +  NL  DHID +++  AY  AK R+F      +    
Sbjct: 164 VVELSSFQLE--GIQQMRARGAAILNLTPDHIDRYESHAAYGQAKTRIFLN----QGVGD 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               +    +V+  A  A          G  +   ++      Q+    ++     +   
Sbjct: 218 FAVVNVDDPDVVGLARQARVPRYGFSLTGNPVEALELAGRAVAQEGGFRLDFLKETYSLT 277

Query: 306 ---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G     NA+ A  L    G+    V   L+    +P R E V        +    
Sbjct: 278 NRALRGAHNAQNAMAATLLARLGGVPREAVQAGLDGYPGLPHRLESVRVLDGVEWVNDSK 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A   +S+ + L+      +G ++++   G  +    +P++ +        A++T      
Sbjct: 338 ATNVDSVLVALRAF----AGNLLLI-AGGKGKGAPYQPMVDE--GRGKVKAVLTI----G 386

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           +D E + A      P     G    A+R A E+    D ++++     +     N E + 
Sbjct: 387 QDAELLAAAYREAAPVHAC-GTLEVAVRRARELAKGGDTVLLS-PACASYDQFKNFEDRG 444

Query: 483 SVDCDIIREI 492
                +++ +
Sbjct: 445 ETFKRLVKAL 454


>gi|327462914|gb|EGF09235.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1]
          Length = 444

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   + +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGSFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLDLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|319401048|gb|EFV89267.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus epidermidis
           FRI909]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 127/360 (35%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +            S  +  +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG--------LPGSDYFAFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H            TN+  DH DY +     ++A    F+ +
Sbjct: 155 ------------RRHFLSYH------PDYAIMTNIDFDHPDYFKNIDDVYDA----FQHM 192

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            L  +   I + DD Y +++     +    V   G+ +   I+ K +       Q  + +
Sbjct: 193 ALNVKKGIIAWGDDEYLRKL-----DVDIPVYYYGFKETDDIYAKNIQITEKGTQFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G   + NAL    +     ++   + E L     V  RF     +++
Sbjct: 248 QGEFYDQFLSPQFGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VLVDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAESLSKADQV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +      E+   +   ++I+ I G             +I++L K D  V++  G G 
Sbjct: 366 FLCEIFGSIRENTGDLTIKDLINRIDGSTLID------ENSIDVLEKFDNAVILFMGAGD 419


>gi|225351418|ref|ZP_03742441.1| hypothetical protein BIFPSEUDO_03013 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157762|gb|EEG71045.1| hypothetical protein BIFPSEUDO_03013 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 521

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 125/430 (29%), Gaps = 65/430 (15%)

Query: 82  FSATIRSNTPILVVDNTRK--------FLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           FS+ I+ + P +V  +            LSL        + +  + V G  GK++ +S +
Sbjct: 94  FSSAIKPDNPEIVAAHAAGERIVHRSDILSLLM------NTKRAVTVAGAHGKTTTSSML 147

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I   +G             S+A    +     + L    +      V        S  
Sbjct: 148 AHILTHAGE------GNLADPSYAIGGSIQGKDGVILDGGHAGQGDVLVAEADESDGSFA 201

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                           TN   DH+D++ TQ+ Y  A       +       ++  DD  +
Sbjct: 202 -------KYHPEIAIVTNSEADHLDHYGTQENYRAA---FVNHVQHAIKSVVMCGDDEGN 251

Query: 254 KEVMKRA---HNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----------QVTISVE---- 296
             V++       A   V +         L     +H +             T+ V     
Sbjct: 252 LAVLRALDASAAAHTVVYATQDAASLGDLNGAAFVHIESESESAQSGAEHFTLHVPAGLL 311

Query: 297 ---GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +       +PG     NA  A      +G+D     E          RF+  GT S
Sbjct: 312 GEQERMVPVTLAVPGIHNARNASAAIIAAALLGVDIEKAAEAATSFLGAARRFQVRGTVS 371

Query: 354 RGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +   +  DYAH    +  +L    R      I V+F                 AL  AD 
Sbjct: 372 Q-VTVVDDYAHHPTEISALLDAARRKYPQSAIRVIFQPHLFSRTKFFAEAFAEALAKADD 430

Query: 413 AIVTDDNPRSED--------PEKIRAEIIHGIPGFIE-----KGNRIEAIRTAIEMLNKQ 459
            IVT   P  E         P  I  E +       E       +   A +  +   +  
Sbjct: 431 VIVTGIFPAREKQEDYPTVGPATIVDEALKLDHTPAEDWIRGVEDMHTAAQMMVMRAHHG 490

Query: 460 DVLVVAGKGH 469
           DV+   G G 
Sbjct: 491 DVIFTVGAGD 500


>gi|219870389|ref|YP_002474764.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
 gi|219690593|gb|ACL31816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
          Length = 432

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 138/394 (35%), Gaps = 59/394 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +L            + VV +   F               I+A+TG++GKS+V 
Sbjct: 70  IVISPGLALATAEIQQAIQAGVEVVGDIELFYREA--------KAPIIAITGSNGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +   ++ +++G+     G                        ALS L         +E S
Sbjct: 122 TLTTEMAKQAGVKVGMGGNIGV-------------------PALSLLKGD-YELYVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +++ + Y  AK++++          I+  +D
Sbjct: 162 SFQLE--TTYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIYHHAEN----VIVNGED 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +   ++A  +  +      +    +      +++  +  I+++         + G  
Sbjct: 216 P--QTFPEQAVGSLKKF----AEKDAEYTACNGELYSGDEAVIAID------ELKITGRH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL +  L  A G+D + +++ L+    +  RF+ V TN     I    A    S  
Sbjct: 264 NVMNALASMSLAEAAGVDRSGIVKALQSYSGLDHRFQLVPTNDGVRWINDSKATNVGSTV 323

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  ++    G + ++   G  +D     +   I            D           A
Sbjct: 324 AALNGLQ--VEGTLYLLL-GGDGKDADFSELKPFINQPNTVCYCFGKDG----------A 370

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E+       +      +A+      L   D++++
Sbjct: 371 ELAALTQNSVLVETMEQAVAQIRLRLKAGDMVLL 404


>gi|88799425|ref|ZP_01115002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
 gi|88777735|gb|EAR08933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
          Length = 463

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 129/397 (32%), Gaps = 49/397 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+S    L D +     +  + +  +   FLS F           ++A+TG++ KS
Sbjct: 88  ADVLVMSPGVPLADPAIKKALDQGVQLSSDIELFLSEF--------NGKVIAITGSNAKS 139

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V +++ +  +  G  +   G                         +            +
Sbjct: 140 TVTAWLGEALKAGGQKTLVAGNIGI--------------------PVLETDHAAYDVAVL 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   L  +        N+  DH+D ++T   Y  AK +++       +  +  
Sbjct: 180 ELSSFQLEL--LSRVNADIACVLNISEDHMDRYETLAHYVQAKQKIY----FGAASVLYN 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             DA ++ ++                  +   K+       Q   + +   +      LP
Sbjct: 234 RSDALTQPLVPDHVLKRTFASDAPDLNHYGLRKQDGNEWLAQGFDLVLPVSE----VALP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL    L    G D +  L  L     +P R + +   +    I    A    
Sbjct: 290 GGHNVMNALAVLALADMAGNDRSATLTALTSFSGLPYRCQAIRERAGITFINDSKATNVG 349

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L+ + ++  G  I +   G  +DQ   P+   I      +     D         
Sbjct: 350 STTAALEGLVSVR-GANIHLLAGGQAKDQDLSPLAEVIEQTCKQVYAFGQD--------- 399

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            R + +      +E     EA   A     + D++++
Sbjct: 400 -RQQFLALTDRAVECETLSEAFAKANANAQEGDIVLL 435


>gi|310659201|ref|YP_003936922.1| UDP-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Clostridium
           sticklandii DSM 519]
 gi|308825979|emb|CBH22017.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Clostridium
           sticklandii]
          Length = 446

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 97/270 (35%), Gaps = 22/270 (8%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +   +    +  N+  DH++ H+T   Y  AK R+FE     E   ++  DD   +    
Sbjct: 168 IKTFRPCISAILNITEDHLNRHKTMSEYMKAKFRIFENQSSDE-FLVLNYDDELLRLSQS 226

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNA 315
                        Y  +   LK+   + N+Q V      K++        L G+  + N 
Sbjct: 227 EIKPKII------YFSRREILKEGIFVENEQIVACIGNTKEYIMDVKDILLLGQHNLENV 280

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + +  GID +++ + +     V  R E V T +    I    A   +S    L+ 
Sbjct: 281 LAAVSIAVLAGIDKSIIKQEVMNFRGVEHRLELVRTYNDVNYINDSKATNPDSSIKALEA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-RAEIIH 434
           +        +++   G D+       +      +  + ++       E  + I +  I  
Sbjct: 341 M-----NTPVILIAGGMDKQSDYSSFIDSCIPKVKHLILL------GETKDVIEKTAISK 389

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G+    +  +  +A+  A     + D +++
Sbjct: 390 GLGNITKVEDMKQAVDVAFLKAKEGDTVLL 419


>gi|228935998|ref|ZP_04098808.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823766|gb|EEM69588.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 436

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 110/378 (29%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              +++  +           G    F   + +    +     + V    +D F     G 
Sbjct: 207 EELQKIQAKVP---VIFYGFGEDNDFQ-ARNIQKRTDGTIFDVFVRNTYYDTFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D   V   L     V  RF       +   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
              ++  R       ++ VF         K       +L  AD   + D   + R    E
Sbjct: 321 NATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|257869275|ref|ZP_05648928.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2]
 gi|257803439|gb|EEV32261.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2]
          Length = 444

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 101/308 (32%), Gaps = 40/308 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   +AVTG+ GK+S    +  +      +SF IG   T          +  +  Y   
Sbjct: 103 QPYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSFLIG-DGTGHGDPNAEFFSFEACEYRRH 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+Y                                 TN+  DH DY+Q+    F+A   
Sbjct: 162 FLAY--------------------------SPDYAIMTNIDFDHPDYYQSIDDVFSAFQS 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
           + +++   +     + DDAY +++      A   +   G      +  K +       + 
Sbjct: 196 MAKQV---KKGIFAFGDDAYLRKL-----EADVPIYYYGVNDDDDVQAKNIQRTTTGSEF 247

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + +  ++   F+ P  G+  + NAL    +    G+D   V E +     V  RF    
Sbjct: 248 DVYIHNENIGHFVLPAFGQHNINNALGVIAVAYKEGLDMTEVAEEMLSFPGVKRRFSEKK 307

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  I  DYAH    +   +    +      II VF                 ALDL
Sbjct: 308 VADM--TIVDDYAHHPAEIRATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAEALDL 365

Query: 410 ADIAIVTD 417
           AD   + D
Sbjct: 366 ADSVYLCD 373


>gi|58038641|ref|YP_190605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
           oxydans 621H]
 gi|58001055|gb|AAW59949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconobacter
           oxydans 621H]
          Length = 476

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 111/339 (32%), Gaps = 58/339 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GKS+  + +  +   +G      G   T S                  AL  L
Sbjct: 143 IAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGTAS-----------------LALPLL 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  + +          RLD     A    NL  DH+D H     Y  AK  +F+ +
Sbjct: 186 PDDGVYVIEM----SSYMLERLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDNM 241

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P +  A+I  DD + + +  +  + G +V+ +       +                   
Sbjct: 242 GPDD-LAVIGMDDDWCRAIASQVASRGVQVVELDADALPPYDGPA--------------- 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG     N   A  +   +G+D A +   L+    +  R + V        
Sbjct: 286 --------LPGRHNAQNVGAALTIASHLGLDEAAIRTGLKSFPGLEHRLQKVAECDGVSF 337

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I    A  + ++   L            V++  GG    G    +      +A   ++  
Sbjct: 338 INDSKATNAEAVSKALAA-------YDKVMWIAGGVAKAGGIESLAPFFRHIAQAFLI-- 388

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                +D + + A +      F + G   +A+  A +  
Sbjct: 389 ----GQDADVLAATLETHGVPFQQCGTLEKAVPAAFKAA 423


>gi|256846972|ref|ZP_05552418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715636|gb|EEU30611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 457

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 140/389 (35%), Gaps = 48/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y +   +A ++  TPI+    T   L       Y     ++++VTG++GK++  + +Q+
Sbjct: 83  PYDVPLVAAFVKKGTPII----TEAELG------YEIFSGHLVSVTGSNGKTTTTTLIQK 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +         +      I            +  YL   LS     G              
Sbjct: 133 MLDAGLSHIAKY--AGNIGVSFTKTAQELSADDYLVTELSSFQLLG-------------- 176

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +       TN+  +H+DYH+T++ Y NAK+ +       +   + +  D + +E
Sbjct: 177 ---TPDLHPHIAVITNIFANHLDYHKTRENYINAKLNITRNQTKDDYLIMNWDRDEW-QE 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + +R+         +G      +++        ++V  + +         L G   V NA
Sbjct: 233 IARRSSATIVPFSRLGKSKDGAYVEDGVIYWRGEKVMPTKD-------IRLIGPQNVENA 285

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A       G+D+  ++  L     V  R ++V  + +G R Y D    S  +E     
Sbjct: 286 LAAIAAAKLSGVDNEAIINVLTTFGGVRHRLQYV-MDYQGRRFYNDSK--STDIEATEVA 342

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++       +++   G DR      ++      +  + +        E  +K++      
Sbjct: 343 LQGFEQP--VILLAGGLDRGYTFERLVPYFKKHVKALIVF------GECKDKMKDAGEQA 394

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    E  N + A+  A ++    DV+++
Sbjct: 395 VLPVYESENAVTAVPEAWKLSEPGDVILL 423


>gi|242243000|ref|ZP_04797445.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           W23144]
 gi|242233601|gb|EES35913.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           W23144]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 128/360 (35%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +            S  +  +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG--------LPGSDYFAFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H            TN+  DH DY +     ++A    F+ +
Sbjct: 155 ------------RRHFLSYH------PDYAIMTNIDFDHPDYFKNIDDVYDA----FQHM 192

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            L  +   I + DD Y +++     +    V   G+ +   I+ K +       Q  + +
Sbjct: 193 ALNVKKGIIAWGDDEYLRKL-----DVDIPVYYYGFKETDDIYAKNIQITEKGTQFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G   + NAL    +     ++   + E L     V  RF     +++
Sbjct: 248 QGEFYDQFLSPQFGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R       ++ VF                 +L+ AD  
Sbjct: 308 --VLVDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAESLNKADQV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +      E+   +   ++I+ I G             +I++L K D  V++  G G 
Sbjct: 366 FLCEIFGSIRENTGDLTIKDLINRIDGSTLID------ENSIDVLEKFDNAVILFMGAGD 419


>gi|332885968|gb|EGK06212.1| UDP-N-acetylmuramate-L-alanine ligase [Dysgonomonas mossii DSM
           22836]
          Length = 455

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 107/314 (34%), Gaps = 29/314 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L   GT GK++ +S +  I ++S L          + +++ +  L+  S   + +A
Sbjct: 109 SSKALCCAGTHGKTTTSSMLAHILKQSHLDCNAF-LGGILKNYSSNLMLSDKSEFTVIEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y  S    H  +                      T++  DH+D ++T++ Y  +    
Sbjct: 168 DEYDRSFHWLHPYM-------------------ALITSVDPDHLDIYRTEEEYLKS-FEK 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+ +    ++  +   S +V         +V +        H K +   + + +   
Sbjct: 208 FTTLIQQGGALVMKHNIKLSPKV-----GEDIKVYTYSEDKGDFHAKNIKIGNGEIRFDF 262

Query: 294 SVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               +  D     +P    + N++ A  L    G     +   +        RF+F+   
Sbjct: 263 VTPKEVIDNIQLGVPVRINIENSIGAMALAWLNGATPDELRHAMLTFQGAKRRFDFILKT 322

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLAD 411
            +   +  DYAH    L   + +++ +   R +  VF                 +L L D
Sbjct: 323 DK-IVMIDDYAHHPQELAASITSVKELYPDRKVTGVFQPHLYSRTKDFADEFAKSLSLLD 381

Query: 412 IAIVTDDNPRSEDP 425
             I+ D  P  E P
Sbjct: 382 ELILLDIYPAREKP 395


>gi|330718754|ref|ZP_08313354.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc fallax KCTC
           3537]
          Length = 443

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 94/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G  GK+S    +  + +    +S+ +G  +       ++R          +     
Sbjct: 106 IAVAGAHGKTSTTGLLAHVLKNIAPTSYLVGDGT--GRGVPNSRFFVVEADEYRRHFKDY 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+       +A    F   
Sbjct: 164 -------------------------APDYAILTNIDFDHPDYYTDINDVTSA-FSDFANN 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K   A  + DD + +++  +A         V         + +          ++  G
Sbjct: 198 VKKAIFA--WGDDKHLRQLHPKA---DIYYYGVNPTRDDFVAQNIRKSTKGSHFDVTYRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           KD  +F  PL G+  + NAL    +     +D  L+ E+L     V  RF          
Sbjct: 253 KDLGEFSVPLYGQHSILNALAVIAVAYMEKVDLDLLREYLMTFTGVKRRFSEKHIAD--I 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH  + ++  L   R      +II +F                 +L+ AD   +
Sbjct: 311 TVIDDYAHHPSEIDATLDAARQKYPDKQIIAIFQPHTFSRVIAYKDEFARSLNAADKVYL 370


>gi|228923443|ref|ZP_04086729.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836228|gb|EEM81583.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 436

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 113/379 (29%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFADINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++  +       V+  G+ +      + +    +     + V    +D F     G
Sbjct: 207 EELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 NHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   ++  R       I+ VF         K       +L  AD   + D   + R    
Sbjct: 320 INATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKG 379

Query: 426 EKIRAEIIHGIPGFIEKGN 444
           E    ++   I G     +
Sbjct: 380 ELTIEDLQKRIDGAELITD 398


>gi|89891769|ref|ZP_01203271.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
 gi|89515924|gb|EAS18589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
          Length = 452

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 145/415 (34%), Gaps = 57/415 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH  I Q +   A+ +V S             I +N P++           FASR     
Sbjct: 62  GHD-IEQILN--ADVVVKSPGIPDNATIVQKIIEANIPVISE-------IEFASRFSD-- 109

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            E  +A+TG++GK++V S +  I Q +       G                         
Sbjct: 110 -EVEIAITGSNGKTTVTSLIGHILQIANYDVTIGGNIG-------------------QSY 149

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMR 232
            + ++     +  +E SS  LD   +   K       N+  DH+D +    + Y  +KMR
Sbjct: 150 AAQVAESPAEYRVLEVSSFQLD--GIKTFKPKVAVLLNITPDHLDRYDYKFENYVASKMR 207

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +      +    I  ADD   +E + +      +++    Q    +     A    QQ+ 
Sbjct: 208 I-AMNQDENDFLIYNADDPTIQEAIIQFK-PKSKLVPFSMQQALEY----GAFIKDQQIN 261

Query: 293 ISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           I+++   F        + G+    NA+ AA     + I    + + L     V  R E V
Sbjct: 262 INLDTNLFTMPIQKLSIKGQHNTANAMAAATTAKLLQIRKETIRQSLASFQGVEHRLEQV 321

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              ++   I    A   N        + ++    + +V   G D+      +   +  ++
Sbjct: 322 LKINKVQYINDSKATNVN---ATYYALDSMEKPTVWIV--GGVDKGNNYSDLFALVNKNV 376

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I  + +DN       KI       +   +E  +  +A+R A ++    D +++
Sbjct: 377 KAIVCLGNDN------SKIVEAFSGCVDNMVETSSMEDAVRVAYKLAGPGDNVLL 425


>gi|307718045|ref|YP_003873577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
 gi|306531770|gb|ADN01304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
          Length = 459

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 148/432 (34%), Gaps = 48/432 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP-------ENILAVTGTS 124
           V+ +        A +    P   V  T +FLS  A  +              ILAVTG+ 
Sbjct: 65  VLGTHREEDFLEADVVIKNP--AVPRTSRFLS-LARHVETDISLFLKACRSPILAVTGSK 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+ AS +  I   +     ++G   T S       L+  SP+ L  +   L   G   
Sbjct: 122 GKSTTASALHHILSAA-FPGARLGGNITTSPLTFLRELSEESPVVLELSSWQLGDLG--- 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                        R+        + TN+  DH + + + +AY   K  +     P ++  
Sbjct: 178 ------------GRISFT-PQVAALTNIYPDHQNAYASMEAYVEDKFWITATQDPSQTFL 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
              A D + + +               ++ +        A   +Q+      GK+     
Sbjct: 225 YP-ASDPWGRWMAANTPATALPF----FEERPTSPPPRAAFLTEQEGLFLDHGKEIPLLP 279

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG     N L+A  +    G D AL+   L     +P R E V     G   Y D
Sbjct: 280 ERLLVPGAHNRLNLLLAGAMAYTFGTDPALIRTRLSSFPGIPHRLELVREKG-GVSFYND 338

Query: 362 YAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            A T  +++   +           + +   G D++    P  G +A     I ++     
Sbjct: 339 SAATIPDAVLAAVSAFE-----CPVHLITGGTDKNLDLSPYRG-LAGMPVTIYLLEGSAT 392

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           R   P  +  E   GIP      +  EA+  A    +  +V++ +  G  +  +  +   
Sbjct: 393 RRLIP--LLHE--SGIPYLGPYRSLEEALAEAHHRASSGEVVLFS-PGAASFEMFRHEFH 447

Query: 481 KMSVDCDIIREI 492
           +  V  D++R +
Sbjct: 448 RGEVFRDLVRRL 459


>gi|254509149|ref|ZP_05121249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
 gi|219547946|gb|EED24971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
          Length = 441

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 145/404 (35%), Gaps = 68/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L      +     + VV +         +    K    ++A+TG++GKS
Sbjct: 71  ADLVVANPGIALATPEIQLALVAGVPVVGDI-----ELFAWQVDKP---VIAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      + + +GL     G     +                      L +Q      +
Sbjct: 123 TVTDLTGVVAKAAGLKVGVGGNIGVPA--------------------LDLLAQDADLYVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L A +F NL  DH+D ++  + Y  AK+R+F+         I+ 
Sbjct: 163 ELSSFQLE--TTSSLSLKAAAFLNLSEDHMDRYEGMEGYRQAKLRIFDH----ADACIVN 216

Query: 248 ADDAYS------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ADD  +      K++++ + N          QG+    +    I     +T         
Sbjct: 217 ADDKATYPDVGDKKLIEFSLNGSADYHLAELQGQEFLFQGSAPIMPSSDLT--------- 267

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   + NALV   L   + +D +L L+ L+    +  R + V  N +G +   D
Sbjct: 268 ----LVGRHNIANALVVLALLSQVDVDLSLGLDALKSYSGLTHRCQVVADN-QGIKWVND 322

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+ +  +   +  ++     ++V G G   D     +   +A     +    +D  +
Sbjct: 323 SKATNVASTLAALSGLSLQGKLYLLVGGVGKGADFS--ELAPVLASLNVQLCCFGEDGSQ 380

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
                         +    +  + +EAI   I   L   D++++
Sbjct: 381 F-----------MSLHPSAKYFDNMEAIVAWINPQLQAGDMVLL 413


>gi|218903320|ref|YP_002451154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
 gi|218538769|gb|ACK91167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
          Length = 246

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 16/183 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  +  DGH +
Sbjct: 4   MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHDY 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ 
Sbjct: 56  VKEAMDNGAVASLWKKSYG------TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++V   ++ I + +       G  ++                +L   +  +S 
Sbjct: 110 ITGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEM-GMSE 168

Query: 180 QGV 182
           +G 
Sbjct: 169 KGC 171


>gi|166154104|ref|YP_001654222.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|166154979|ref|YP_001653234.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335342|ref|ZP_07223586.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis L2tet1]
 gi|165930092|emb|CAP03575.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|165930967|emb|CAP06529.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 803

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 124/377 (32%), Gaps = 50/377 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SS+ S ++       +    VV    + L+  A        +  + VTG+ GK
Sbjct: 64  GAV-VVYSSSISKENPEFLSAKSRGNRVVHRA-ELLAELA------QDQISIFVTGSHGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V+S +  I Q +  +         I    Q+                     G  +  
Sbjct: 116 TTVSSLITAILQEAKKNPSFA-----IGGLNQEGINGGS---------------GSEYFV 155

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA         +          TN+  +H+   +  +    A ++ F   L  +     
Sbjct: 156 AEADESDGS---IRCYTPEFSVITNIDDEHLSNFEGDRELLLASLKDFA--LKTQQICWY 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFL 303
             D    +        +  +  + G       L  +       ++  + + +D    D  
Sbjct: 211 NGDCPRLR--------SCLQGHTFGLDSS-CDLHILSYYQEGWRLYFTAKYQDVVYADIE 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V NA  A G+ +++GID   +         V  R +   ++        DYA
Sbjct: 262 VQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQRKNSSET-FLFLEDYA 320

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPR 421
           H  + +   L+ +RT    R I+   C   R    R  +     A   AD  ++T+    
Sbjct: 321 HHPSEISCTLRAVRTAVGQRRILAI-CQPHRFSRLRECIDSFPSAFKDADEVLLTEVYSA 379

Query: 422 SEDPEKI-RAEIIHGIP 437
            E+ E I   E+   I 
Sbjct: 380 GEEAEDISYQELAEAIS 396


>gi|238797708|ref|ZP_04641203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
 gi|238718460|gb|EEQ10281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
          Length = 438

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 153/400 (38%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + +V +   F          ++P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSDAADAGVEIVGDIELF--------CRENPAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                        AL+ L  +    V +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGV-------------------PALTLLKQEN-QLVVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTTSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V+G+        
Sbjct: 212 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVQGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  +  L+ L     +P RF+ V  ++    I    A 
Sbjct: 263 KLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLVFEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L+ ++    G + ++   G  +      +   +  D   +     D    E+
Sbjct: 323 NVGSTEAALEGLQ--VDGTLHLLL-GGDGKSADFSGLTRFLQGDQIKVYCFGRD---GEE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+              +A+    + L   D++++
Sbjct: 377 LAALRPEVSQ------LTETMEQAMVLLSKNLAPGDMVLL 410


>gi|328675940|gb|AEB28615.1| Cyanophycin synthase II [Francisella cf. novicida 3523]
          Length = 561

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 133/378 (35%), Gaps = 29/378 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTIRLTDYICRVAGK---LTGYTSTDWVKVNDELIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKV 282
             AK  +F  L  + S  +I  D++Y KE   +   A   V     Q    +        
Sbjct: 283 AEAKSIVFRAL-GQGSHGVINLDNSYMKERFDKLSCAKIVVTQNPQQHDMEYYLSKADYA 341

Query: 283 CAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           C + +   V +    K       +         +  + NA++A  L   +GI   ++ + 
Sbjct: 342 CIVEDGNFVWVEANSKKVILPVVEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKA 401

Query: 336 LEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG 392
           L          R              +DYAH    +E +L  ++     G+  ++ G  G
Sbjct: 402 LRSYSNDPKVNRGRANVFEWDNKVAVLDYAHNEAGIEALLNMVKAYDKGGKKYLMIGTTG 461

Query: 393 DRDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKG 443
           DR      I   +     D  ++  T+   R     E P  IR ++      I       
Sbjct: 462 DRKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISH 521

Query: 444 NRIEAIRTAIEMLNKQDV 461
             I+ ++  +E L   D+
Sbjct: 522 GEIDGVKFLVEKLESNDM 539


>gi|24375298|ref|NP_719341.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella oneidensis MR-1]
 gi|24350105|gb|AAN56785.1|AE015814_5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella oneidensis MR-1]
          Length = 465

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 112/361 (31%), Gaps = 28/361 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +     I    Q+  ++         
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFL-----IGGVPQNFGVS--------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D      A    +
Sbjct: 150 --ARLGESAFFVVEADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQK-Q 206

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                  +P +   I  AD    K+ +     +           K  H K +    +  +
Sbjct: 207 FHHQIRTVPGQGKVIWPADSHAVKQTIDMGCWSEQETYHSSEVTKGWHAKALSDDCH--E 264

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    L + L G+  + NA++A      +G+  +  ++ L +      R E +
Sbjct: 265 FEVFFDGQSQGVLDWALIGQHNIENAVMAIAAARHVGVAPSAAIDALARFVPPKRRLELL 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T   G  +Y D+AH   ++   +K +R       I +                 +A  +
Sbjct: 325 DT-VNGVSVYDDFAHHPTAIATTIKGMRAKVGQTKITIVLEPRSNTMKSGVHKDTLAHSM 383

Query: 410 --ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             AD A +            ++  +   +          + +          D +VV   
Sbjct: 384 LQADEAFL---YQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVAASAKPGDTIVVMSN 440

Query: 468 G 468
           G
Sbjct: 441 G 441


>gi|330828043|ref|YP_004390995.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
 gi|328803179|gb|AEB48378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
          Length = 427

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 128/359 (35%), Gaps = 44/359 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+ + A  IV S   +L        +   + +V +   F+              ++A
Sbjct: 50  LDEALLKQAHMIVASPGIALATPELKAAAECGVQIVGDIELFVRE--------TQTPVIA 101

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GKS+V + V ++   +GL+    G   T +                      L  
Sbjct: 102 ITGSNGKSTVTTLVGEMIAEAGLNVGVGGNIGTPA--------------------LELLK 141

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q +    +E SS  L+      ++  A    NL  DH+D +Q    Y  AKM + +    
Sbjct: 142 QPMDLCVLELSSFQLE--TTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQH--- 196

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++  DDA      +   + G    S G      +    C +  +  +T+  E   
Sbjct: 197 -SKHILVNRDDA------QTLPDVGQVWQSFGL---DCNGYGRCLLDGRHWLTLHGEPLL 246

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G     NAL A  LC A+GI  A  L  L +   +P R  FV   +    I 
Sbjct: 247 AVDEMKIVGAHNQANALAAMALCDAVGIPRAAQLTVLRRFEGLPHRARFVREVNGVRWIN 306

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
              A    +    +  +R    GR+ ++   G  + Q   PI   +   +  +     D
Sbjct: 307 DSKATNVGATLAAVAGVRESVKGRL-LLLAGGQGKGQDFGPIQALLGNQIDHMYCFGQD 364


>gi|257870256|ref|ZP_05649909.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
 gi|257804420|gb|EEV33242.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
          Length = 458

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 104/279 (37%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++ +       TN+   H+DYH  +  Y  AK RL + +  ++   I 
Sbjct: 168 MELSSFQLM--GIETLHPKIAVITNIYEAHLDYHGNRSEYVRAKWRLQQNMTAEDFLVIN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+++ +     +V+    Q K        A   ++Q+    E         +
Sbjct: 226 WN----QPELVELSQQTKAKVIPFSTQQKV-----AGAYLFEEQLYFKDEAIMPVSELGV 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  +    GI +  +++ L     VP R ++V T    G  + + +  +
Sbjct: 277 PGSHNVENALAAIAVAKLEGIANEAIVQALHTFSGVPHRTQYVDTIE--GVRFFNDSKAT 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           NSL   +           +++   G DR      ++  +    A +          +  E
Sbjct: 335 NSLATEMALGG--FQKDQLILLAGGLDRGNSFDELIPSLQDLKAIVLF-------GQTKE 385

Query: 427 KIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+  A    GI       +   A+  A ++    D +++
Sbjct: 386 KLAEAARKAGIKTIKLTEDVTTAVPLAYQLSQPGDTVLL 424


>gi|103487383|ref|YP_616944.1| Mur ligase, middle region [Sphingopyxis alaskensis RB2256]
 gi|98977460|gb|ABF53611.1| Mur ligase, middle region [Sphingopyxis alaskensis RB2256]
          Length = 462

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/401 (18%), Positives = 130/401 (32%), Gaps = 48/401 (11%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK---SSVASFVQQICQR 139
           SA +  + P +   NT     +  + L            G  G    S+V   +  I +R
Sbjct: 74  SAAVEDSVPDVAAANTLGLARMSRADLNAALFNAAAKGVGVGGTSGKSTVTGMIGWILER 133

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G          T+ + A      +P   +   A + +    +    V+ S   +  +  
Sbjct: 134 AGQKP-------TVMNGAVMRNFASPDTPF---ASALVGGDAIYVSEVDESDGSIALY-- 181

Query: 200 DGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                     TN+  DH  +D        F AK R+          A+I ADD  S  ++
Sbjct: 182 ---APDVAVVTNISLDHKSLDELHRLFGDFAAKARI----------AVINADDPESAPLL 228

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             A+     VL  G+     I       + N  +  +       D    +PG     NAL
Sbjct: 229 AGAN-----VLRFGFGDNAAIRGSDFEPLPNGCRFAVHFAADSHDVRLQMPGRHNAANAL 283

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     A+ I  A  +  L     +  R+E +G       +  D+AH  + +   L  +
Sbjct: 284 AAIAAARALNIPVAQSVAALADFAGLARRYEVLGQAGD-VTVIDDFAHNPDKVAATLAAV 342

Query: 377 RTITSGRIIVVFGCGGDR--DQGKRPIMGKIALDL--------ADIAIVTDDNPRSEDPE 426
             +  GR ++ F   G     Q  + +    A  +         D         RS   E
Sbjct: 343 AEL-PGRALLFFQPHGYGPLRQMGKELATSFAAGMRDGDRLYVCDPVYFGGTVDRSIGSE 401

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            + A+I+ G    +    R       ++     D +++ G 
Sbjct: 402 ALVADIVAGGADAVHLTTRANCGAAMLDEARPGDRILILGA 442


>gi|212702355|ref|ZP_03310483.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
 gi|212674233|gb|EEB34716.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
          Length = 436

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 122/402 (30%), Gaps = 70/402 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGT 123
            GA+ +V S    +      +  +       +    + L+           E +LAVTGT
Sbjct: 76  AGAKLVVPSPGLPVVRLREMMGPH------ADAEGTEILAEMELAWRALDGEPVLAVTGT 129

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++  S    + +  GL  F  G   T  S                     LS +   
Sbjct: 130 SGKTTTVSLAAAMLREQGLRVFLGGNIGTPLSEY------------------LLSGEKAD 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +E SS  L                N+  +H+DYH+  + Y  AK RLF     ++  
Sbjct: 172 VLVLETSSFQL--QCCSTFHPRVAVVLNISPNHLDYHKDMEEYIEAKFRLFRCQTEEDLA 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +    +  +     RA     R      +G+F                           
Sbjct: 230 VLAPELEETAARFGLRARKVWIRP-----EGRFPD------------------------- 259

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G+   +NA  A   C   G+        +     +P R E V        +     
Sbjct: 260 CPLFGQHNQFNAEAAWQACRPFGVTLENAARAVAAFKPLPNRLESVARVHGVLYVNDSKC 319

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            T  +LE+ L+ +             CGG    G    M  +    A    +        
Sbjct: 320 TTVAALEVALEAMDHPVH------LLCGGKFKGGDLDGMKDLLRRKAKSVNLYG------ 367

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              +I      G+          +A+    + + + DV+++A
Sbjct: 368 ASREIFEAAWQGVVPLCWHERMEDAVLALQDKVGEGDVVLLA 409


>gi|126663519|ref|ZP_01734516.1| cyanophycin synthetase [Flavobacteria bacterium BAL38]
 gi|126624467|gb|EAZ95158.1| cyanophycin synthetase [Flavobacteria bacterium BAL38]
          Length = 872

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 123/355 (34%), Gaps = 36/355 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + +G   F++G T++   + Q++ +          A   L    V    +E + 
Sbjct: 499 LIAHIVKNNG---FKVGFTTSDGIYVQNHMMEKGDTTGPISAEYILKDPTVEFAVLETAR 555

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   +   G  TN+  DH+      T +     K  + +  + K+  AI+ A+
Sbjct: 556 GGILRSGLGFSRCDIGIITNIQEDHLGISDINTLEDLARVKATVVKS-IKKDGWAILNAE 614

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTIS--------V 295
           D      +K A +  C +     +     +K      K+ A++    +TI          
Sbjct: 615 DENC---LKIAQDLNCNIAYFSLEENTPIVKQLAKEGKIVAVYENGFITIKKGEWKIRIE 671

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
                        +F + N L A       G  +  +   L+         PGR      
Sbjct: 672 RATHVPLTLGGKAKFMIANVLAATLAAYLQGFKTDDISLSLQTFIPSAAQTPGRMNIF-- 729

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +  ++ +D+AH       + + + ++ + + I +    GDR          IA  + D
Sbjct: 730 EFKKFKVLIDFAHNPAGYRGVEEYLSSVEATKKIGIIAGVGDRRDEDIKECATIAARMFD 789

Query: 412 IAIVTDD-NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQ 459
             I+  + + R    E+I   I+ GI               +EA++ AI      
Sbjct: 790 HIIIRQEKHLRGRTEEEINNLILEGIAASGKTVTHEIITKEVEALKHAINSAEDG 844


>gi|163942418|ref|YP_001647302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus weihenstephanensis
           KBAB4]
 gi|229013893|ref|ZP_04171021.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048]
 gi|229062372|ref|ZP_04199689.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603]
 gi|229135527|ref|ZP_04264312.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|229169419|ref|ZP_04297128.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621]
 gi|229486469|sp|A9VKJ7|MURC_BACWK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163864615|gb|ABY45674.1| UDP-N-acetylmuramate--alanine ligase [Bacillus weihenstephanensis
           KBAB4]
 gi|228614059|gb|EEK71175.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621]
 gi|228647948|gb|EEL03998.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228716941|gb|EEL68627.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603]
 gi|228747562|gb|EEL97437.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 436

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 114/379 (30%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSYY------------- 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       FNA   +  ++   +   I   DD
Sbjct: 163 -------------PDYAIMTNIDFDHPDYFADINDVFNAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              ++V  +       V+  G+ +      + +    +     + V    +D F     G
Sbjct: 207 EELQKVQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 DHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   ++  R       ++ VF         K       +L  AD   + D   + R    
Sbjct: 320 INATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKG 379

Query: 426 EKIRAEIIHGIPGFIEKGN 444
           E    ++   I G     +
Sbjct: 380 ELTIEDLQKRIDGAELITD 398


>gi|229019918|ref|ZP_04176714.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273]
 gi|229026149|ref|ZP_04182520.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272]
 gi|228735158|gb|EEL85782.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272]
 gi|228741383|gb|EEL91587.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273]
          Length = 436

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 114/379 (30%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSYY------------- 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       FNA   +  ++   +   I   DD
Sbjct: 163 -------------PDYAIMTNIDFDHPDYFTDVNDVFNAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++  +       V+  G+ +      + +    +     + V    +D F     G
Sbjct: 207 EELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 DHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   ++  R       ++ VF         K       +L  AD   + D   + R    
Sbjct: 320 INATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKG 379

Query: 426 EKIRAEIIHGIPGFIEKGN 444
           E    ++   I G     +
Sbjct: 380 ELTIEDLQKRIDGAELITD 398


>gi|322513884|ref|ZP_08066963.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
 gi|322120283|gb|EFX92230.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
          Length = 475

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 143/428 (33%), Gaps = 50/428 (11%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
           +  GA+  +   A ++   S       I    P +      +        + A  +  +H
Sbjct: 60  VEAGAKVFIGHQAENIIGASVVVASSAIDDTNPEVKAAKEARIPVIQRAQMLAEIMRFRH 119

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  + +  I   + L    +      S+          +  YL   
Sbjct: 120 G---IAIAGTHGKTTTTAMISMIYTEAQLDPTFVNGGLVKSAG---KNAHLGASRYL--- 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +        A    
Sbjct: 171 IAEADESDASFL---------------HLQPMVSVVTNIEPDHMDTYGGDFEQMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQV 291
           F    P    A++ ADD     VM+ A   G +V++ G+  K  +  +            
Sbjct: 216 FLSNSPFYGLAVMCADDET---VMEIAPQVGRQVVTYGFSDKADYRIEDYQQTGFQGHYT 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +   G+  D L  +PG+    NA  A  +    GI +  +L  L        RF+ +G+
Sbjct: 273 VVCPNGERIDVLLNVPGKHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGS 332

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +    +  DY H    +++ +K  R+     R++++F                  L
Sbjct: 333 FIRPNGKVMLVDDYGHHPTEVDVTIKAARSGWEDKRVVMIFQPHRYSRTRDLFDDFVQVL 392

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  I+ +     E P      + +   I + G    I   +  +      +++   D
Sbjct: 393 SQVDALIMLEVYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQIIQDGD 452

Query: 461 VLVVAGKG 468
           +++  G G
Sbjct: 453 LILAQGAG 460


>gi|284048640|ref|YP_003398979.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952861|gb|ADB47664.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidaminococcus
           fermentans DSM 20731]
          Length = 473

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 129/369 (34%), Gaps = 45/369 (12%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             +  ASRLY  H     AVTG++GK++  + + ++     + +   G            
Sbjct: 112 AEAEEASRLYKGH---WCAVTGSNGKTTTTTLLGEMLATLPVKTAVAGNIG--------- 159

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    L+K L  L         V A            +        N+  DH + H
Sbjct: 160 -------FALSKELQDLDQD----SWVAAELSSFQLEGTTSLAPDVACIVNITPDHFERH 208

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y  AK ++F    P +   I+ ADD  S ++  +A +   RV+    +       
Sbjct: 209 GDMAGYVAAKSKIFAFQTP-DQILILNADDPVSSKLGDKARS---RVIWFSTEKVLPEGG 264

Query: 281 KVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            +         T++++GK           + G     + L A       G+ +  +   L
Sbjct: 265 FIE----DGWFTLALDGKKERICQVSDLQIFGAHNEQDVLAACLSAHFAGVTAENMARVL 320

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           +    V  R E+V T   G + Y D   T+   +  +K +     G +I+    G D+  
Sbjct: 321 KAFRGVEHRLEYV-TAINGVKYYNDSKATNT--DSAIKALEAFKDGHVIL-LAGGHDKMT 376

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEM 455
           G   +M  +      + ++ +   R  +  K      HG+   I   G   +A+R A  +
Sbjct: 377 GLDDLMEAVKAKTDALILLGEARQRFCEAAK-----KHGVQNIIMIDGTFEDAVRKAYSL 431

Query: 456 LNKQDVLVV 464
                V+++
Sbjct: 432 AKAPQVVLL 440


>gi|77919798|ref|YP_357613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
 gi|122063252|sp|Q3A2G4|MURD_PELCD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77545881|gb|ABA89443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
          Length = 450

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 138/423 (32%), Gaps = 65/423 (15%)

Query: 51  GNKED--GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           G + D  GH     A+  GA+ I +S    L   +        + V              
Sbjct: 53  GLRFDCGGHD---AALLAGADLIAISPGIPLTVPAVAGALQAGVPVQGEIEIAAREL--- 106

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   ++A+TGT+GKS+    + +I +  G  +F  G   T                
Sbjct: 107 -----SAPMVAITGTNGKSTTTCLMGEIMRCWGRRAFVGGNLGT---------------- 145

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                +    S     +  E SS  L+   +D  +   G   NL  DH+D +     Y  
Sbjct: 146 ---PLIEATRSTDWDWIVAEISSFQLEA--IDTFRPRYGMLLNLTADHLDRYAGMGEYVA 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK+RLFE +  ++  A++ ADDA    V++   +  CR +          +       + 
Sbjct: 201 AKLRLFENMTAED-VAVVNADDAL---VVRSTTDLPCRKIPFSSS----RVLDEGMGFDG 252

Query: 289 QQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           Q +     G+   F      L G   V N + A    +  G  + +  + +     +  R
Sbjct: 253 QHIVWRHAGRQERFDVADLQLKGLHNVENVMAALIPPLMEGCPTDIAWKAVCGFSGLDHR 312

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              V      G  + D +  +N   ++            + +   G D+     P+ G I
Sbjct: 313 M--VLVREIDGVSWYDDSKGTNVGSVVKSLAGLQGP---VTLIAGGKDKGGDYAPLAGLI 367

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDV 461
              +  + ++     R          +     G      R +++  A++           
Sbjct: 368 GEKVEHLILIGQAADR----------MQAAFQGMTTIL-RADSLEAAVQQAQQVTMAGGT 416

Query: 462 LVV 464
           +++
Sbjct: 417 VLL 419


>gi|261400231|ref|ZP_05986356.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria lactamica ATCC 23970]
 gi|269210030|gb|EEZ76485.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria lactamica ATCC 23970]
          Length = 458

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 121/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHRH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGIPENFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL         G+D     E L     
Sbjct: 265 A----DGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHAGVDIRTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                 +L  AD            D +   AE +  + G +  G   +A +   ++    
Sbjct: 380 KAALPASLKEADQVFC---YAGGVDWD--VAEALVPLGGRLHVGKDFDAFVAEIVKNART 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|270292308|ref|ZP_06198519.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M143]
 gi|270278287|gb|EFA24133.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. M143]
          Length = 444

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 107/352 (30%), Gaps = 43/352 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG   I+  +A+   +      ++   +      +FL  F            + V G  G
Sbjct: 60  QGDVEIIAGNAFRPDNNVEIAYADQNGISYKRYHEFLGSFMRDFV------SMGVAGAHG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S    +  +      +SF IG  +   S      +                       
Sbjct: 114 KTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD------------------- 154

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E   H +  H            TN+  DH DY  + +  FNA     +++        
Sbjct: 155 --EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLF 203

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           +Y +DA   E+ K   NA         +        +         T+   G++   F  
Sbjct: 204 VYGEDA---ELRKITANAPIYYYGFEAESNDFVASDLLRSTTGSTFTVHFRGQELGQFHI 260

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G   + NA    GL    G D  LV EHL+    V  RF     N     I  D+AH
Sbjct: 261 PTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--TVIIDDFAH 318

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +   L   R    S  I+ +F                 AL+ AD   +
Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|121595963|ref|YP_987859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acidovorax
           sp. JS42]
 gi|120608043|gb|ABM43783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax sp.
           JS42]
          Length = 498

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 150/406 (36%), Gaps = 56/406 (13%)

Query: 90  TPILVVDNTRKF-----LSLFASRLY-----GKHPENILAVTGTSGKSSVASFVQQICQR 139
            P+++    R+      L L+A  L        +   +LA+TGT+GK++V S    + + 
Sbjct: 78  APVVIAARARQISVEGELGLYAQALRELRAGQGYAPAVLAITGTNGKTTVTSLTGLLVEC 137

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +       G    I     D          L +              +E SS  LD   +
Sbjct: 138 ADKRVAVAG---NIGPTLLDTLAQHIDAGTLPE-----------VWVLELSSFQLD--GV 181

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---------------LLP----- 239
            G +  A +  N+ +DH+D+H + QAY  AK R+F E               LLP     
Sbjct: 182 QGFEPTAAAVLNITQDHLDWHGSLQAYAQAKGRIFGETGLMVLNREDAEVMALLPPPVRV 241

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           K     + A   +  ++ +R  + G  V+S + +  +     +       Q   + ++  
Sbjct: 242 KLQKPQLRAHVTFGGDMPQRPGDFGIEVVSGMAWLVRAHEADETAKRGKAQDAELHIQRL 301

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G     NAL A  L  A G   A +L  L +    P R E VG        
Sbjct: 302 MPADALRIRGRHNAINALAALALAQAAGCPLAPMLYGLREYRGEPHRVESVGIVREVE-- 359

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y D +  +N +   +  +  + + R +VV   G  + Q   P+   +A     + ++  D
Sbjct: 360 YFDDSKGTN-VGATVAALTGLGADRRLVVILGGDGKGQDFSPLAAPVARYARAVVLIGRD 418

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            P      +IRA +        +     EA++ A +  +  D +++
Sbjct: 419 AP------QIRAALQGCGVPLQDAATLPEAVQLATQRAHAGDAVLL 458


>gi|16126795|ref|NP_421359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus CB15]
 gi|221235575|ref|YP_002518012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus NA1000]
 gi|30316113|sp|Q9A597|MURD_CAUCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766042|sp|B8H096|MURD_CAUCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13424123|gb|AAK24527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus CB15]
 gi|220964748|gb|ACL96104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus NA1000]
          Length = 471

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 125/367 (34%), Gaps = 49/367 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKF-------LSLFAS 107
             A A+G   + + +A   Q  +  +    P+        V+  R         + LFA 
Sbjct: 46  EAAAAEGFAVVDLQAADWSQFAALMLSPGVPLSHPKPHWTVEKARAAGVEVLGDVELFAR 105

Query: 108 RLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            +          I+A+TGT+GKS+  + +  +C  +G  +   G                
Sbjct: 106 TVNAAPAHKRPKIIAITGTNGKSTTTALIGHLCASAGRDTRVGGNIGL------------ 153

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                    L      G     +E SS+ LD      +K  A    N+  DH+D H    
Sbjct: 154 -------GVLGLEDMHGGAVYVLELSSYQLDL--TSSLKPDAVVLLNISPDHLDRHGGMD 204

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HL 279
            Y  AK R+F     K   AII  DDA+ +++      A  R +     GK +      L
Sbjct: 205 GYIAAKRRIFLNQ-GKGDTAIIGVDDAWCQQICTEITAANRRTIWPISAGKAMGRGVYAL 263

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           + V      ++V   VE  D      LPG     NA  A     AIGI     ++ L   
Sbjct: 264 QGVLYDATGERV---VEVADILRARSLPGRHNWQNAAAAYAAARAIGISMQDAVDGLMTF 320

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +  R E VG   +   +    A  +++     + + +      I             +
Sbjct: 321 PGLAHRMETVGKIGKVRFVNDSKATNADAAR---QAMSSYPKFYWIAGGVAKAGGIDDLK 377

Query: 400 PIMGKIA 406
            +  +IA
Sbjct: 378 DLFPRIA 384


>gi|68249685|ref|YP_248797.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 86-028NP]
 gi|260581815|ref|ZP_05849611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|81174949|sp|Q4QLG0|MURD_HAEI8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68057884|gb|AAX88137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           influenzae 86-028NP]
 gi|260095008|gb|EEW78900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|309973397|gb|ADO96598.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2846]
          Length = 437

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 129/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAEVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K       N   + +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---KLTFGEGENQARQTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEVTLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  A+GI+   +   L     +  RF+ V   + G R   D   T+    
Sbjct: 269 NYMNILAATALAQAVGINLDSIRTALRHFKGLDHRFQLVH-QANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     +++ G G   D      + ++      I           D      
Sbjct: 328 VAALAGLYIEGKLHLLLGGDGKGADFS---ELAELINQPHIICYC-----FGRD----GV 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   D++++
Sbjct: 376 QLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|16273062|ref|NP_439294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae Rd KW20]
 gi|260580220|ref|ZP_05848050.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
 gi|1171072|sp|P45063|MURD_HAEIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus
           influenzae Rd KW20]
 gi|260093504|gb|EEW77437.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
          Length = 437

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 128/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N     +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---RLTFGENENQAKHTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+ V   + G R   D   T+    
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVH-QANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     +++ G G   D      + ++      I           D     A
Sbjct: 328 VAALAGLYIEGKLHLLLGGDGKGADFS---ELAELINQPHIICYC-----FGRD----GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +AI      L   D++++
Sbjct: 376 LLAKFSSQSYLFDTMEQAIEFLRPTLQSGDMVLL 409


>gi|47565112|ref|ZP_00236155.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241]
 gi|47557898|gb|EAL16223.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241]
          Length = 436

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 112/379 (29%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +   +   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALRV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++  +       V+  G+ +      + +    +     + V    +D F     G
Sbjct: 207 EELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 NHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   ++  R       I+ VF         K       +L  AD   + D   + R    
Sbjct: 320 INATIEAARQKHPEREIVAVFQPHTFSRTEKFLNEFAESLSKADQVYLCDIFGSARENKG 379

Query: 426 EKIRAEIIHGIPGFIEKGN 444
           E    ++   I G     +
Sbjct: 380 ELTIEDLQKRIDGAELITD 398


>gi|253568797|ref|ZP_04846207.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 1_1_6]
 gi|251840816|gb|EES68897.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 1_1_6]
          Length = 467

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 127/367 (34%), Gaps = 43/367 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S      I  T+ +   +++             
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQS-----HIECTAFLGGISKNYGT---------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L SQ   +  +EA       H L          T    DH+D + T++AY  +   
Sbjct: 155 --NLLLSQKSPYTVIEADEFDRSFHWLS---PYMSVITATDPDHLDIYGTEKAYLES-FE 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            +  L+      II    +   +V      AG RV +        H + +   + +  + 
Sbjct: 209 HYTTLIQPGGALIIRKGISLQPKV-----QAGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                   +     +P    + N +    L    G+    + + +     V  RF+F   
Sbjct: 264 FVAPDTRINNIQLGVPVSINIENGVATMALAHLNGVTDEEIRQGMNSFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLA 410
           N +      DYAH  + ++  + +IR +   + I  +F                 +L L 
Sbjct: 324 NDQ-VVFLSDYAHHPSEIKQSVLSIRELYKDKKITAIFQPHLYTRTRDFYQDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
           D  I+ D  P  E P      + I   +  GI   + K    E I   + +L  +++ ++
Sbjct: 383 DEVILVDIYPARETPIPGVTSKLIYDNLRPGIEKSMCK---KEEI---LNILKDKNIEVL 436

Query: 464 V-AGKGH 469
           +  G G 
Sbjct: 437 ITLGAGD 443


>gi|206895549|ref|YP_002247146.1| UDP-N-acetylmuramate--alanine ligase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738166|gb|ACI17244.1| UDP-N-acetylmuramate--alanine ligase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 451

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 148/419 (35%), Gaps = 47/419 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P+ +   A+ +V SSA    +       +  I V+  +     L    L      
Sbjct: 57  GHD--PKHLQD-ADFVVYSSAIKPDNEEFRAALDEHIPVLHRSEILADLLDEGLS----- 108

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AVTGT GKSS   F+ Q  +  G     IG                     +   L 
Sbjct: 109 --VAVTGTHGKSSTTGFIAQGLELLGFDPTFIG-------------------GAVVNPLG 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +  G   V  E         R   I        NL  DH+ ++ T +       R   
Sbjct: 148 GNAKLGSGPVIGEVDESDGSLVR---IPASVKVVLNLDDDHLPFYGTMENLAATVHRFIL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              P  S A++  +D     +++    +  RV   G+    I +  +       ++++  
Sbjct: 205 GR-PHNSIAVLNYNDP----LLRGMDYSSRRVHWCGFGSPDIRIDALELEGVNPKISVCY 259

Query: 296 EGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           EGK F  L   + G+    N  +A  + +A+GI+     + LE++     R + +G +  
Sbjct: 260 EGKQFTILNDEIFGKHNGLNLAMAFSVLVAMGINPNSAAKVLEEVQTPRRRQQILG-SVN 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  + VD A     L+ + +   +     +++       R +       +     +D+ I
Sbjct: 319 GTSVMVDIALHPTELKALREVFESSKRRVLLIFQPHRYSRYKLLFKDFVEELSLWSDVVI 378

Query: 415 VTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            T+  P  E  E      +  EI  G        ++ +  +    ++N  D+++ AG G
Sbjct: 379 -TEIYPSDEPVEDTSSYPLYEEI--GSRNKFFYSDKEKLFQDLPNIMNGYDIVLFAGLG 434


>gi|199599430|ref|ZP_03212824.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           HN001]
 gi|199589683|gb|EDY97795.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           HN001]
          Length = 436

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 109/374 (29%), Gaps = 55/374 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +         +S+ IG   T             +  Y    L+Y 
Sbjct: 106 IGVAGAHGKTSTTGLLAHTLSGVAKTSYLIG-DGTGKGVRDSKFFVFEADEYRRHFLAY- 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+   +  +NA      E 
Sbjct: 164 -------------------------HPDYMIMTNIDFDHPDYYHGFEDVYNAFE---TEA 195

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +   + + DD + +++      A   V   G         + V              
Sbjct: 196 NQVQKAIVAWGDDPWLRKL-----KAKVPVYYYGTSDRDDFQARNVKRDTKGSSFDAYFH 250

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F  PL GE  V NAL    +     +D+ L+   L     V  RF         
Sbjct: 251 DELIGHFFVPLFGEHSVLNALAVVAVAHMEKLDAGLIARELGNFSGVKRRFAEKDLKDM- 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  N ++  L   R       II VF                  L  AD   
Sbjct: 310 -IIVDDYAHHPNEIKATLDAARQKYPDKAIIAVFQPHTYSRTQAYEPQYVQVLSQADQTF 368

Query: 415 VTDD-NPRSEDPEKIR-AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T   +   E   KIR  +I+  I G   I++ +    ++          V+V  G G  
Sbjct: 369 LTPIFSSAREKNGKIRSEDIVAQIKGAAVIQQADMRPLLKF--HHA----VVVFMGAGD- 421

Query: 471 TVHIVTNGEKKMSV 484
               +   EK    
Sbjct: 422 ----IQKYEKAYED 431


>gi|327490074|gb|EGF21862.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1058]
          Length = 444

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 105/347 (30%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVA 130
           +   + +   +A    N   +   +             G    + +++   G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGSFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI---SKGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 773

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 100/285 (35%), Gaps = 18/285 (6%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+V N  K L   A          ++ +TG++GK+ V  ++ Q+               
Sbjct: 33  FLIVANPLKALQKLAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLS--------PDRCI 84

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
             S  + ++++  P  ++    L+  +  G+    +          R+  IK   G  TN
Sbjct: 85  VRSPRSYNSQIGVPLSVW---QLNEEAELGIFEAGISEMGEMGALKRM--IKPTIGILTN 139

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSV 270
           +G  H +   + Q     K+ LF++        I   D+   S  V K    A     S 
Sbjct: 140 IGGAHQENFFSLQEKCMEKLTLFKDC----DVVIYNGDNELISNCVAKSMLTAREIAWSC 195

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               + +++ KV    +   +       D  F  P   +  + NAL     C+ +   + 
Sbjct: 196 KDIERPLYISKVTKKEDHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPAD 255

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            + E + +L  +  R E     +    I   Y     SL++ L  
Sbjct: 256 QITERMARLEPIAMRLEVKEGKNNCILINDSYNSDLASLDIALDF 300


>gi|88707115|ref|ZP_01104809.1| cyanphycin synthetase [Congregibacter litoralis KT71]
 gi|88698627|gb|EAQ95752.1| cyanphycin synthetase [Congregibacter litoralis KT71]
          Length = 544

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 146/441 (33%), Gaps = 51/441 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  A   GA  ++     +L     +   +   L   +        + R     P  ++ 
Sbjct: 104 LAAAREHGAPVVLDEDVLTLGTGRHSQSWDLFELPHPD------DVSWRGLKAVPTALI- 156

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
            TGT+GK++    +  I + +G  +   G +ST      D  L          A   L  
Sbjct: 157 -TGTNGKTTTVRLLASIAKTAGQVA---GVSSTDWLAMGDELLHRDDYAGPGGARIVLRD 212

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEEL 237
           Q      +E +  GL +  L   +      TN+  DH+      T +   + K  +   L
Sbjct: 213 QRCELALLETARGGLLRRGLAVARADVALITNIAADHLGDFGVETLEDLADVKWSVTAAL 272

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---- 293
             K S   + A+D     +M RA +A   +             K       +  T+    
Sbjct: 273 DKKSSLV-LNAEDPL---LMARAASASAPLCLFSLSPSAPAF-KTHVEKGGKGFTLRRGR 327

Query: 294 --SVEG---------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              +EG         K     +       + NAL AA +  A+G+D  ++   L  L   
Sbjct: 328 LERIEGGVGKSFLSAKKMPLSYGGVARHNIANALAAAAVADALGMDLEVIARGLCALGNE 387

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPI 401
                       G    VD+AH    LE ++  +  + + R  ++    G   D+  R  
Sbjct: 388 DNPGRANLYTVGGATFLVDFAHNPAGLEALMPMVEGLPARRRALITGQAGDRGDEDIRAF 447

Query: 402 MGKIALDLADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------- 449
               A    D   +   D + R     ++   +      FIE+G+  ++I          
Sbjct: 448 ADASAALHFDRIWLKRMDGHARGRAEGEVARIMR---DAFIEQGHSAKSISLSKTELDAT 504

Query: 450 RTAIEMLNKQDVLVVAGKGHE 470
           R A+      D++V+    HE
Sbjct: 505 RAALRWAKPGDLVVLLS--HE 523


>gi|254282164|ref|ZP_04957132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
 gi|219678367|gb|EED34716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
          Length = 441

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 136/400 (34%), Gaps = 60/400 (15%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS   ++            + V+ +   F++             ++ +TG++GKS+V 
Sbjct: 64  LVVSPGIAMDHPLVDRALKAGVRVIGDIDLFMAEA--------NAPVIGITGSNGKSTVT 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  I + SG +    G   T +                      L         +E S
Sbjct: 116 EMVAAILRASGSAVAVGGNLGTPA--------------------LDLLEHPADIYVLELS 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+  R + + L   +  N+  DH+D H +   Y  AK R+F          +    D
Sbjct: 156 SFQLE--RSEKLGLAVATVLNISADHLDRHGSMPRYHQAKHRIFRG----ARTVVANRAD 209

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPG 308
             +  +++   +         ++     L++        +V +    +        PLPG
Sbjct: 210 PLTVPLLEEKADVVV------WRDGEPDLREFGTRVVDGEVMLCRGFDTLAAATELPLPG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A  +  A G+D   ++  L+  H +P R   V     G R   D   T+  
Sbjct: 264 RHNLANALAAMAVASAAGVDDEQLVPGLKHFHGLPHRCALV-RELDGIRFINDSKGTN-- 320

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +      +  +     +V+   G  + Q    +          +  V       E   +I
Sbjct: 321 IGATRAALEGLGGNGNVVLIAGGVGKGQDFTELQASAEQRCRRVLTV------GESAREI 374

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAI----EMLNKQDVLVV 464
             E+  G     +   R+E I  A+    E+    D++++
Sbjct: 375 --ELALGATVPCQ---RVETIEQAVTRGRELAKAGDIVLL 409


>gi|289434885|ref|YP_003464757.1| hypothetical protein lse_1520 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171129|emb|CBH27671.1| murC [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 141/418 (33%), Gaps = 58/418 (13%)

Query: 59  FIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           F    I  G   I  ++   + ++    +    P++      KFL               
Sbjct: 53  FSADNIKSGLTIIAGNAFPDTHEEIERAMELGIPVI---RYHKFLGQLIDGY------TS 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +      +S+ IG  +   +                      
Sbjct: 104 IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGT---------------------- 141

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  + ++EA  +   +H L   K      TN+  DH DY ++    FNA    FE L
Sbjct: 142 --KGADYFALEACEYQ--RHFLAY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+    D    E+ K   +        G + +F   K V       +  +    
Sbjct: 193 GKQVKKAVFALGDDV--ELRKLTLDIPIIYFGFGEENEFQ-AKNVIKETTGTRFDVYHRD 249

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    F  P  G+  V NAL    LC   G+    V   L+    V  RF    T+    
Sbjct: 250 EFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVKRRFSI--TDKGKQ 307

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH  + +   +   R      +I+ VF                 +L+LAD   +
Sbjct: 308 VLVDDYAHHPSEIRATVNAARQKYPDKKIVAVFQPHTFTRTRTFLQGFADSLNLADEVYL 367

Query: 416 TDD--NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D   + R +      A++ H   G   I++ +  E ++          V++  G G 
Sbjct: 368 CDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PDAVILFMGAGD 419


>gi|15903416|ref|NP_358966.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           R6]
 gi|116515384|ref|YP_816811.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           D39]
 gi|148984866|ref|ZP_01818119.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP3-BS71]
 gi|149003263|ref|ZP_01828159.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007572|ref|ZP_01831207.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP18-BS74]
 gi|149011756|ref|ZP_01832952.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP19-BS75]
 gi|168487491|ref|ZP_02711999.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1087-00]
 gi|168491587|ref|ZP_02715730.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC0288-04]
 gi|182684476|ref|YP_001836223.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CGSP14]
 gi|194398270|ref|YP_002038152.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           G54]
 gi|225861354|ref|YP_002742863.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650203|ref|ZP_04524455.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CCRI 1974]
 gi|237820914|ref|ZP_04596759.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298230253|ref|ZP_06963934.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298254457|ref|ZP_06978043.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503257|ref|YP_003725197.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255306|ref|ZP_07341376.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS455]
 gi|303260146|ref|ZP_07346118.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP-BS293]
 gi|303262536|ref|ZP_07348477.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264938|ref|ZP_07350853.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS397]
 gi|303267248|ref|ZP_07353112.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS457]
 gi|303269558|ref|ZP_07355321.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS458]
 gi|32171458|sp|Q8DP40|MURC_STRR6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122277691|sp|Q04HS5|MURC_STRP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706331|sp|B5E685|MURC_STRP4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620434|sp|B2IQY8|MURC_STRPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766028|sp|C1CSE1|MURC_STRZT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15459022|gb|AAL00177.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus pneumoniae R6]
 gi|116075960|gb|ABJ53680.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae D39]
 gi|147758723|gb|EDK65720.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760931|gb|EDK67901.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147764187|gb|EDK71119.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922888|gb|EDK74004.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP3-BS71]
 gi|182629810|gb|ACB90758.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           CGSP14]
 gi|183569685|gb|EDT90213.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574271|gb|EDT94799.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC0288-04]
 gi|194357937|gb|ACF56385.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae G54]
 gi|225726468|gb|ACO22319.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238852|gb|ADI69983.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301800356|emb|CBW32986.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           OXC141]
 gi|301802241|emb|CBW34992.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           INV200]
 gi|302597674|gb|EFL64750.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS455]
 gi|302636253|gb|EFL66747.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638643|gb|EFL69106.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP-BS293]
 gi|302640902|gb|EFL71286.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS458]
 gi|302643213|gb|EFL73496.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS457]
 gi|302645457|gb|EFL75689.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           BS397]
 gi|327389706|gb|EGE88051.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA04375]
 gi|332073857|gb|EGI84335.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA41301]
 gi|332074274|gb|EGI84751.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA17545]
 gi|332199565|gb|EGJ13640.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA41317]
          Length = 444

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASDLLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|283770818|ref|ZP_06343710.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283460965|gb|EFC08055.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 437

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 124/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDLTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I++L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSIDVLEQFDNAVVLF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|149275988|ref|ZP_01882133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter sp.
           BAL39]
 gi|149233416|gb|EDM38790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter sp.
           BAL39]
          Length = 447

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 148/426 (34%), Gaps = 44/426 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I+ S     +           I V+         FA R         + +TG++GK+
Sbjct: 65  AAEIIKSPGIPEKTPVIKEIKKNKIPVISEI-----EFAKRYTH---AKTICITGSNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +     I + +GL+   +G    I +                   + +++       +
Sbjct: 117 TTSLLTYHILKHAGLN---VGLAGNIGNSFA----------------AQVATAEYDWYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  LD   +   +       N+  DH+D +      Y  +KMR+ +     +S    
Sbjct: 158 EISSFMLDD--MYDFRADVAVLLNITPDHLDRYDYKLGNYAASKMRIAQNQSEDDSFIY- 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD  + + MK+      R+     +        + + +    + ++ +         L
Sbjct: 215 CADDEETLKAMKQ-QKVESRMYPFSIRKHIEQGAYLESNNIHININLNDQLTMSITDLAL 273

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  +YN++ +  +   + I +A + E +     V  R E V   S    I    A   
Sbjct: 274 QGKHNIYNSMASGIVAKVLDIRNATIRESMGDFKNVEHRLEHVAKISGVEYINDSKATNV 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           NS    L+++        +++   G D+      +   +   +  I  +  DN R     
Sbjct: 334 NSTWYALESV-----NTDVILIMGGVDKGNDYEMLKDMVRQKVRAIVCLGKDNKR----- 383

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            I       +   +   +  EA++ A  +  K + ++++     +  +  N E + +   
Sbjct: 384 -IHEAFEDDVEVIVNTFSAHEAVQVAYHLAKKGNTVLLS-PACASFDLFKNYEDRGNQFK 441

Query: 487 DIIREI 492
             ++E+
Sbjct: 442 AAVKEL 447


>gi|319776623|ref|YP_004139111.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|329124136|ref|ZP_08252683.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
 gi|317451214|emb|CBY87447.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|327467561|gb|EGF13059.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
          Length = 437

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 128/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTVLKAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATILNVTEDHMDRYMDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N     +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---RLTFGENENQAKHTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+ V   + G R   D   T+    
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVH-QANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     +++ G G   D      + ++      I           D     A
Sbjct: 328 VAALAGLYIEGKLHLLLGGDGKGADFS---ELAELINQPHIICYC-----FGRD----GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +AI      L   D++++
Sbjct: 376 LLAKFSSQSYLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|282917000|ref|ZP_06324758.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319487|gb|EFB49839.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 437

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 124/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDLTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I++L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSIDVLEQFDNAVVLF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|220933950|ref|YP_002512849.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995260|gb|ACL71862.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 475

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 144/448 (32%), Gaps = 88/448 (19%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  Q A+ +VVSSA   ++          I VV    + L+      +G    
Sbjct: 63  GHD---AAYVQDADVLVVSSAIDPRNPELIAAREARIPVVRRA-EMLAELMRFRHG---- 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +    GL      PT  I          +           
Sbjct: 115 --IAVAGTHGKTTTTSLVASLLAEGGLD-----PTFVIGGRLNSTASHSR---------- 157

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               QG   V+    S     H    ++ I    TN+  DH+  +Q       A    F 
Sbjct: 158 --LGQGAYLVAEADESDASFLH----LQPIIAVVTNIDADHLATYQGDFGRLRATFLEFL 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
             LP    A++ A+D   +E+       G  VL+ G      +  + V A   +    I 
Sbjct: 212 HHLPFYGLAVLCAND---RELAGMIAEVGRPVLTYGIGVDADVTARNVRAEGTRTHFEIC 268

Query: 295 VEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +  +D        LPG   V NAL A  +   +G+D A + + L+K   +  RF+  G  
Sbjct: 269 LPERDDTLAVTLNLPGRHNVLNALAAVAVAHELGVDDAAIQQGLDKFQGIGRRFQVYGEL 328

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T +    +  DY H    +   L   R      R+++ F                  L 
Sbjct: 329 KTAAGTVTLVDDYGHHPTEIAATLAAARDAWPDRRLVLAFQPHRYTRTRDLFEDFAEVLS 388

Query: 409 LADIAIVTDDNPRSED---------------------------PEKIRAEIIHGIPGFIE 441
             D  ++ D  P  E                            PE+   E + G+     
Sbjct: 389 SPDALVLLDVYPAGEAAIPGADGRTLARAIRARGRVNPVFVDAPERFV-ETLKGV----- 442

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                         L   DVL+  G G+
Sbjct: 443 --------------LRDGDVLLTQGAGN 456


>gi|292489592|ref|YP_003532482.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora CFBP1430]
 gi|292898188|ref|YP_003537557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Erwinia amylovora ATCC 49946]
 gi|291198036|emb|CBJ45139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase (murein peptide ligase [Erwinia amylovora ATCC
           49946]
 gi|291555029|emb|CBA23087.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora CFBP1430]
 gi|312173768|emb|CBX82022.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 450

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 115/358 (32%), Gaps = 28/358 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I Q  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMTAWILQACGYEPGFV--IGGVPGNFEVSANLGKSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D +   +A       L 
Sbjct: 161 EYDCAFFDKRAKFVHYC------------PRTLILNNLEFDHADIYDDLRAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+   DA  K+VM           +VG  G +   K      +     + 
Sbjct: 209 -RIVPGQGKIILPEQDANLKQVMSM--GCWSEHETVGENGCWQVNK---LSPDASCWEVL 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+      + L GE  + N ++A      +G+        L        R E  G  S
Sbjct: 263 LDGERVAQVNWSLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRG-ES 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
            G ++Y D+AH   ++   L  +R    G  RI+ V          G        AL  A
Sbjct: 322 NGIKVYDDFAHHPTAIHATLAALRGKVGGTARILAVLEPRSNTMKMGISKDDLAPALGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D   +   +       ++    I       +    +EAI       +  D ++V   G
Sbjct: 382 DEVFLYQPHHIPWQVSQVADACIQPAHWSADIDTLVEAIAK---TAHPGDTILVMSNG 436


>gi|315185898|gb|EFU19663.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 459

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 146/432 (33%), Gaps = 48/432 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP-------ENILAVTGTS 124
           V+ +        A +    P   V  T +FLS  A  +              ILAVTG+ 
Sbjct: 65  VLGTHREEDFLEADVVIKNP--AVPRTSRFLS-LARHVETDISLFLKACRSPILAVTGSK 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+ AS +  I   +   +   G  +T             SP+   + LS    +    
Sbjct: 122 GKSTTASALHHILSAAFPGARLGGNITT-------------SPLTFLRELS----EETPV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V   +S    D            + TN+  DH + + + +AY   K  +     P ++  
Sbjct: 165 VLELSSWQLGDLGGRISFTPQVAALTNIYPDHQNAYASMEAYVEDKFWITATQDPSQTFL 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
              A D + + +               ++ +        A   +Q+      GK+     
Sbjct: 225 YP-AFDPWGRWMAANTPATALPF----FEERPTSPPPRAAFLTEQEGLFLDHGKEIPLLP 279

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG     N L+A  +    G D AL+   L     +P R E V     G   Y D
Sbjct: 280 ERLLVPGAHNRLNLLLAGAMAYTFGTDPALIRTRLSSFPGIPHRLELVREKG-GVAFYND 338

Query: 362 YAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            A T  +++   +           + +   G D++    P  G +A     + ++     
Sbjct: 339 SAATIPDAVLAAVSAFE-----CPVHLITGGTDKNLDLSPYRG-LADKPVTVYLLEGSAT 392

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           R   P  +  E   GI       +  EA+  A    +  +V++ +  G  +  +  +   
Sbjct: 393 RRLLP--LLEE--SGISYLGPYRSLEEALAEAHHRASSGEVVLFS-PGAASFEMFRHEFH 447

Query: 481 KMSVDCDIIREI 492
           +  V  D++R +
Sbjct: 448 RGEVFRDLVRRL 459


>gi|255656631|ref|ZP_05402040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-23m63]
 gi|296449914|ref|ZP_06891678.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296878295|ref|ZP_06902304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
 gi|296261184|gb|EFH08015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296430743|gb|EFH16581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
          Length = 451

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 111/335 (33%), Gaps = 37/335 (11%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V +I  R+   ++ +G    I +   D   T+     L   LS               
Sbjct: 125 SLVGEIFSRAKRDTYVVG---NIGNPVIDTIETSNEESVLVTELSSFQ------------ 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                   +D  +    +  N+  DH++ H T + Y  AK  +F     ++   ++  DD
Sbjct: 170 -----LESIDEFRPKVSAILNITEDHLNRHHTMEKYIEAKTNIFMNQTSED-FCVLNYDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K +  + +               ++L+    I +       +   D      LPG  
Sbjct: 224 EIVKGLADKCNAKVIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVS----LPGGH 279

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-L 369
            + N + A  +     ID  ++ + L     V  R EFV        +        +S +
Sbjct: 280 NLENCMAAIAIAYVCKIDLEVIKDVLMTFKGVEHRQEFVRNLDNVIYVNDSKGTNPDSTI 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + I    R       I++   G D+      ++      +  + ++ +     E+  K  
Sbjct: 340 KAIQSYDRP------IILIAGGMDKGSNFDELLETAKSYVKSLVLLGETASNIENCAK-- 391

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                G        +  EA++T+ E+    D++++
Sbjct: 392 ---NKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|148997418|ref|ZP_01825023.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575284|ref|ZP_02721247.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           MLV-016]
 gi|307068165|ref|YP_003877131.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus pneumoniae
           AP200]
 gi|147756473|gb|EDK63514.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578920|gb|EDT99448.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           MLV-016]
 gi|306409702|gb|ADM85129.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus pneumoniae
           AP200]
          Length = 444

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGSDFVASDLLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|83312945|ref|YP_423209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Magnetospirillum magneticum AMB-1]
 gi|118595663|sp|Q2W0H5|MURD_MAGSA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|82947786|dbj|BAE52650.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Magnetospirillum
           magneticum AMB-1]
          Length = 457

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 129/408 (31%), Gaps = 60/408 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-------LSLFASRLYGKHPENILAV 120
           A+ +V S                P  + +  R         + L A  L G     +LAV
Sbjct: 66  ADLLVWSPGIPHTHPQ-------PHPLAEKARAANLPMVCDVELLAQALPG---ARMLAV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  +    GL     G   T                    AL      
Sbjct: 116 TGTNGKSTTTTLLAHVLDECGLPVAAGGNLGT-------------------AALDLPELP 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G     +E SS+ L+      +KL      N+  DH+  H     Y  AK R+F+ L P 
Sbjct: 157 GDGRYVLELSSYQLEL--THSLKLGVAILLNVTPDHLGRHGGMAGYIAAKRRVFDFLTP- 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++  DD   + ++      G RV+ +        L +  +      +  +    D 
Sbjct: 214 GGAAVVGIDDGPCRAIVAELDRRGIRVVKISV---DSVLAEGVSAPEGVLLDNAKPVCDL 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             +  LPG     NA        A G+    + + L     +  R E VG +     I  
Sbjct: 271 KTIPSLPGRHNWQNACAVYAAARAEGLSPKQIAQALATYPGLAHRQELVGEDHGIAWIND 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A  ++++E  L            ++   G  ++ G   +            I      
Sbjct: 331 SKATNADAVEKAL----VCYDHVYWIL--GGQAKEGGIASLEKHFGRIQHAFLI------ 378

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDVLVV 464
             E  E   A  + G   F       +A+  A  +         V+++
Sbjct: 379 -GEATEA-FAATLDGKVRFTRCATLDKAVAAARNLAVSDSIPGAVVLL 424


>gi|188994489|ref|YP_001928741.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis ATCC 33277]
 gi|226722944|sp|B2RIE9|MURD_PORG3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|188594169|dbj|BAG33144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 450

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 144/406 (35%), Gaps = 55/406 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------LFASRLYGKHPENILAV 120
           AI++ +   ++  S  I    P++     R+ ++          FA R        ++ +
Sbjct: 62  AIILEAKEIIK--SPGIPDTAPVI-----RQAVAKEIGIVSEIEFAGRYTDAF---MVCI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++   ++     ++GL     G                            ++  
Sbjct: 112 TGSNGKTTTTMWLYHTLCKAGLDVGLAGNVG-------------------FSLARQVAYD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLP 239
              +  +E SS  LD   +   +       N+  DH+D +    + Y  AKMR+     P
Sbjct: 153 PHPYYVIELSSFQLDN--MYDFRANVAILLNITPDHLDRYDHRFELYAEAKMRITRNQQP 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
           ++     + DD +    +   H    R+L    + +       +   +    + ++    
Sbjct: 211 EDCFIY-WEDDPFISRWVAE-HPPVARLLPFAMEARTDNTTAWINEKNELVVMNLNSPFV 268

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + L  L G    +NA+  A    A+ I +  + E L+    VP R E +        I
Sbjct: 269 MDEELLALSGMHNRHNAMATAIAAKAMDIKNEAIREALQDFKNVPHRLEKIARVKGVDYI 328

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               A   NS    L++++T      +++   G D+      I   +   +  +  +  D
Sbjct: 329 NDSKATNVNSTWYALESMKT-----RVILILGGTDKGNDYTDIENLVLSKVDGLIFLGID 383

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           N      EK+       I    +  +  EA+  A +M +K D +++
Sbjct: 384 N------EKLHKFFDGKISRIADACSMHEAVSLAYKMASKGDTVLL 423


>gi|229087237|ref|ZP_04219383.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44]
 gi|228696079|gb|EEL48918.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44]
          Length = 436

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 113/379 (29%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    S+         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMSQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSYY------------- 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 163 -------------PDYAIMTNIDFDHPDYFTDVNDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++  +       V+  G+ +      + +    +     + V    ++ F     G
Sbjct: 207 EELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 NHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   ++  R       ++ VF         K       +L  AD   + D   + R    
Sbjct: 320 INATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKG 379

Query: 426 EKIRAEIIHGIPGFIEKGN 444
           E    ++   I G     +
Sbjct: 380 ELTIQDLQQRIDGAELITD 398


>gi|294671080|ref|ZP_06735935.1| hypothetical protein NEIELOOT_02788 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307188|gb|EFE48431.1| hypothetical protein NEIELOOT_02788 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 458

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 122/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHQH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +A    +       +P E   +        ++ + +       V   G +    H  +V
Sbjct: 208 LEAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQV 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 261 GGVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 321 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                 +L+ AD            D +   AE +  + G +      +  +   ++    
Sbjct: 380 KAALPASLNDADQVFC---YAGGVDWD--VAEALAPLGGKLHVDQDFDTFVAEIVKHAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|170761088|ref|YP_001788857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226711901|sp|B1KTB9|MURD_CLOBM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169408077|gb|ACA56488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 458

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 119/362 (32%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T                
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +    +    +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 156 -LFANIEEMKEDHMVV--LELSSFQLMTM---DVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  DD  +  +   A         +G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSDN-LLVLNKDDDLTNGMENEA---------LGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               ++++GK+        L G   + N L A  +     +    +         V  R 
Sbjct: 260 SNNKLTIQGKEICDSKDIKLKGRHNIANLLAAFCMVNKY-VSIDSMKYVATNFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+        +     +  +      + +  + S    V+   GG   +     + +  
Sbjct: 319 EFIRE------VNEVKYYNDSIASSPSRTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQD 460
            D   I I+  D        KI++     I         +   +  EA++ A  M  K D
Sbjct: 373 YDKIKILILMGD-----TKNKIKSAFEKVISHKKCEMEIVIVNSMEEAVKVADNMAEKGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|261417495|ref|YP_003251178.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373951|gb|ACX76696.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328089|gb|ADL27290.1| putative UDP-N-acetylmuramate--alanine ligase murC [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 475

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 140/421 (33%), Gaps = 55/421 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A+VVS+A    +          + V+  + + L+  +           +A++GTSGK
Sbjct: 71  GLTAVVVSTAIEDSNPDLKRAKELGVPVMHRS-EMLAKISKE------ARTIAISGTSGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V + V  I   +GL    +     ++  AQ       S            S G     
Sbjct: 124 STVTAMVYHILDYAGLQPSVMTGAGLVNLQAQGKIGNAVSGKGEWLVAEVDESDGTLVRY 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                               G   N+ +DH    +         ++  + +L      I+
Sbjct: 184 E----------------PEIGVILNIDKDH----KEISELEQIFLKFSQNVLSAGHILIV 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLF 304
                 +K+       +  R    GY+  ++ ++ +        +   V   +    F  
Sbjct: 224 NDAHPLAKKF------SAGREFDFGYES-YVSVQGIDFKSVGTHIQFRVRHGNELVKFEI 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG+  + NAL A    +  G+      + L     V  R + +GT   G  +  D+AH
Sbjct: 277 PLPGKHNMENALAATAAALRAGVSLHTCADALSSFPGVFRRHQILGT-FNGITLVDDFAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIA----------LDLADI 412
               +   +K+ +  T GR+I  F   G       ++ ++  IA              D+
Sbjct: 336 NPAKIAASIKSAQDFTEGRVIAWFQPHGFGPTRFLRKDLVDFIAKTLRPMDMDFDRKNDV 395

Query: 413 AIVTDDN------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              ++         R      +  ++I      I   +R E  +  +E     D +++ G
Sbjct: 396 MFFSEIYYAGGTVTRDISAGDLADDLILKGCEAIYIADRNECAKKMLEYAEPGDTILLMG 455

Query: 467 K 467
            
Sbjct: 456 A 456


>gi|148556850|ref|YP_001264432.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
 gi|148502040|gb|ABQ70294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
          Length = 495

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 107/303 (35%), Gaps = 40/303 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G   +VVS    L        +     P++   +   F    AS         ++ +TGT
Sbjct: 105 GYAGVVVSPGVPLNRHPIAGHAASFGVPVI--SDIELFAQARASL----PAHKVVGITGT 158

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +  I + +G+ +   G                         L         
Sbjct: 159 NGKSTTTALIAHILETAGVPTLMGGNIGL-------------------PILGRDPLPAGG 199

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +       TN+  DH+D +     Y  +K+RLF   +  +  
Sbjct: 200 VYVLELSSYQIDI--TQSLDCDVAVLTNITPDHLDRYDGFAGYAASKLRLFT--MQGKGI 255

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTI---SVEGK 298
           ++I  DD  S E++    N      S+ +       ++  +  +   + + +   S++G+
Sbjct: 256 SVIAGDDEPSVEIINALRNRPIHPASLSWATTEQGEQRPVISRVEMGRVMRVMSSSLQGQ 315

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +       P      NA +A   C  +G+  + + + L     +P R + V    RG   
Sbjct: 316 ENWPALQGP--HNAQNAALAIETCRLLGLSYSQIDQGLRSYPGLPHRMQRVAEK-RGVLF 372

Query: 359 YVD 361
             D
Sbjct: 373 VND 375


>gi|225019925|ref|ZP_03709117.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
 gi|224947289|gb|EEG28498.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
          Length = 463

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 113/352 (32%), Gaps = 36/352 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I AVTG+ GK++  + + ++ +    +    G      +         P        
Sbjct: 116 PCKIYAVTGSDGKTTTTTLISEMLKAQDYNVHLGGNIG--KALLPGIEEIGPD------- 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        VE SS  L   R           TN+  +H+D H T + Y   K  L
Sbjct: 167 ---------DVAVVELSSFQLLSMRQS---PDVAVITNIAPNHLDVHGTMEEYIQCKCHL 214

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQV 291
                   S A++ AD+  +  +        C+    +  + G +        + +  + 
Sbjct: 215 LWHQ-NAFSKAVLNADNEITDGLSGYVRGRLCKFSRRAAPHTGAWADENGDIFLMDNGKQ 273

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+            LPG   V N L A      + ++ A +L+   +   V  R EFV  
Sbjct: 274 TLLFN----QNQIRLPGTHNVENYLAAIAAVSGV-VEPANILKVAREFGGVQHRIEFV-R 327

Query: 352 NSRGGRIYVDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              G + Y D   T        L           +++   G D+     P+   +     
Sbjct: 328 ELDGVKWYNDSIATSPTRTIAGLNAFEQ-----KLIIIAGGYDKKLSYEPLAPVLVSKSK 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            + ++    P+ +      +     +       +  EA+  A ++ +  D++
Sbjct: 383 ALILMGTTAPKIQQAVVDCSGYDPELLPIYHVASMEEAVTLARKIASAGDII 434


>gi|284800049|ref|ZP_05985544.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria subflava NJ9703]
 gi|284796233|gb|EFC51580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria subflava NJ9703]
          Length = 472

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 120/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 109 QWLAENVLHQH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 161

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 162 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFAD 221

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +    +V
Sbjct: 222 LAAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTEQGW----QV 274

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             +       +   G+      + L G     NAL         G+D     E L     
Sbjct: 275 GTVRADGSFDVRHHGETVGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKN 334

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 335 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILTVLEPRSNTMKLGTM 393

Query: 402 MGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
              +  +L+ AD            D +   AE +  +   +  G   +A +   ++    
Sbjct: 394 KAALPESLNDADQVFC---YAGGVDWD--VAEALAPLGSKLHVGKDFDAFVAEIVKNAEA 448

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 449 GDHILVMSNG 458


>gi|282862160|ref|ZP_06271223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
 gi|282563185|gb|EFB68724.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
          Length = 477

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 155/437 (35%), Gaps = 58/437 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V +  +      F A   ++ P+    +        A RL G      LAVTGT+GK++
Sbjct: 79  VVTAPGWKPGKPLFQAAAEADVPVW--GDV-----ELAWRLRGPDAAPWLAVTGTNGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  I + +GL +  +G                     ++   + L  +    ++VE
Sbjct: 132 TVRMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGEETYDVLAVE 173

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS+ L  H    ++  + +  NL  DH+D+H +  AY   K R++E         +  A
Sbjct: 174 LSSYQL--HWAPSLRADSAAVLNLAPDHLDWHGSMDAYAADKGRVYEG---NRVACVYNA 228

Query: 249 DDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D  ++++++ A    GCR +             V       +  ++   K    L  + 
Sbjct: 229 QDPATEDLVREADVEEGCRAIGFTLGTPGPSQLGVVDGILVDRAFVANRQKQAQELAQVE 288

Query: 308 G-----EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                    + NAL AA L  A G+  + V + L        R E V   +    I    
Sbjct: 289 DVNPSAPHNIANALAAAALARAFGVRPSAVRDGLRAFRPDAHRIEHVADVAGVAYIDDSK 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A  +++ E  L           IV    G  +      ++   A  L  + ++  D    
Sbjct: 349 ATNTHAAEASLAAYDP------IVWIAGGLAKGATFDALVTGAAKRLRGVVLMGADR--- 399

Query: 423 EDPEKIRAEIIHGIPGF-IEKGNRIE------AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                IR  +    P   +    R +      A+R A  +    D +++A     ++ + 
Sbjct: 400 ---ALIREALARHAPEVPVVDLERTDTGAMSGAVREAARLARPGDTVLLA-PACASMDMF 455

Query: 476 TNGEKKMSVDCDIIREI 492
            N  K+     D +RE+
Sbjct: 456 VNYNKRGEAFADAVREL 472


>gi|228993421|ref|ZP_04153337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM
           12442]
 gi|228999465|ref|ZP_04159044.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17]
 gi|229007021|ref|ZP_04164649.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228754260|gb|EEM03677.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228760410|gb|EEM09377.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228766489|gb|EEM15132.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM
           12442]
          Length = 436

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 113/379 (29%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    S+         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGNLMSKY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSYY------------- 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 163 -------------PDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++  +       V+  G+ +      + +    +     + V    ++ F     G
Sbjct: 207 EELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 NHSVLNALAVIALCHYENVDVEAVKHQLTTFGGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPE 426
           +   ++  R       I+ VF         K       +L  AD   + D      E+  
Sbjct: 320 INATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKG 379

Query: 427 KI-RAEIIHGIPGFIEKGN 444
            +   ++   I G     +
Sbjct: 380 DLTIQDLQKRIDGAELITD 398


>gi|168187060|ref|ZP_02621695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295070|gb|EDS77203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
          Length = 458

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 154/423 (36%), Gaps = 45/423 (10%)

Query: 75  SAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             + +   + ++R + P LV   N+  +++          P  I  +TG+ GK++  + V
Sbjct: 76  EGFDVVFKTPSMRIDNPALVKAKNSGAYITSEMEEFIKYCPARIFGITGSDGKTTTTTLV 135

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I    G  ++  G                     L  ++  +  +    V +E SS  
Sbjct: 136 YNILMTEGYRTWVGGNIGNP----------------LFASIEEMKEE--DKVVLELSSFQ 177

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L        ++     TNL  +H+D H+  + Y +AK  +F+    K+   ++  D+  +
Sbjct: 178 LMTM---EEEINCALVTNLSPNHLDIHKDMEEYVDAKKNVFKYQENKD-LLVLNKDNDIT 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQ 311
             + + A     RV+    + +      +          + + GK+   L    L G   
Sbjct: 234 NSLTEEAKG---RVMKFSRKEEIKDGAYLNGD------KLVLLGKEICTLGDIKLKGMHN 284

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L A    ++       + +       V  R EFV     G + Y D   +S +   
Sbjct: 285 VENLLAAF-CLVSEDASIESMAKVATTFTGVQHRCEFVK-EIDGVKYYNDSIASSPT--- 339

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKIR 429
             + I  + +    V+   GG         + +   D     ++T    +   +  +K+ 
Sbjct: 340 --RTIAGLRAFEKPVILIAGGYDKHIPFEPLAEEGYDKIKALVLTGLTKDKIKDAFDKVM 397

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            +    IP ++E+G   EAI  A ++  + D++        +  +  N E + +   +I+
Sbjct: 398 KDRGISIPIYMEEGFN-EAIYRAKDIAKEGDIV-TLSPACASFDMFPNFEIRGNRFKEIV 455

Query: 490 REI 492
            ++
Sbjct: 456 NKL 458


>gi|148992591|ref|ZP_01822259.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP9-BS68]
 gi|168484938|ref|ZP_02709883.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1873-00]
 gi|168488818|ref|ZP_02713017.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP195]
 gi|147928608|gb|EDK79622.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           SP9-BS68]
 gi|172041914|gb|EDT49960.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           CDC1873-00]
 gi|183572646|gb|EDT93174.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP195]
 gi|332072314|gb|EGI82797.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA17570]
 gi|332200083|gb|EGJ14156.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           GA47368]
          Length = 444

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEVEGNDFVASDLLRSITGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|255349159|ref|ZP_05381166.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70]
 gi|255503696|ref|ZP_05382086.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70s]
          Length = 803

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 124/377 (32%), Gaps = 50/377 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SS+ S ++       +    VV    + L+  A        +  + VTG+ GK
Sbjct: 64  GAV-VVYSSSISKENPEFLSAKSRGNRVVHRA-ELLAELA------QDQISIFVTGSHGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V+S +  I Q +  +         I    Q+                     G  +  
Sbjct: 116 TTVSSLITAILQEAKKNPSFA-----IGGLNQEGINGGS---------------GSEYFV 155

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA         +          TN+  +H+   +  +    A ++ F   L  +     
Sbjct: 156 AEADESDGS---IRCYTPEFSVITNIDDEHLSNFEGDRELLLASLKDFA--LKTQQICWY 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFL 303
             D    +        +  +  + G       L  +       ++  + + +D    D  
Sbjct: 211 NGDCPRLR--------SCLQGHTFGLDSS-CDLHILSYYQEGWRLYFTAKYQDVVYADIE 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V NA  A G+ +++GID   +         V  R +   ++        DYA
Sbjct: 262 VQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQRKNSSET-FLFLEDYA 320

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPR 421
           H  + +   L+ +RT    R I+   C   R    R  +     A   AD  ++T+    
Sbjct: 321 HHPSEISCTLRAVRTAVRQRRILAI-CQPHRFSRLRECIDSFPSAFKDADEVLLTEVYSA 379

Query: 422 SEDPEKI-RAEIIHGIP 437
            E+ E I   E+   I 
Sbjct: 380 GEEAEDISYQELAEAIS 396


>gi|187735162|ref|YP_001877274.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425214|gb|ACD04493.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 436

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/456 (17%), Positives = 153/456 (33%), Gaps = 90/456 (19%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF- 101
             + +A++G    G      AI  GA   V  ++ S+  +   I  +T     ++ R F 
Sbjct: 4   NNLNIAVLGAGRSGRAAARLAIKHGARVCVFDASSSIDGWPEDIPLHTAA-TEEDGRAFH 62

Query: 102 ------------------------------LSLFASRLYGKHPENILAVTGTSGKSSVAS 131
                                         + L     +G+    I+A+TGT+GK++  S
Sbjct: 63  ADMVVISPGIETDSPFVKSFGREGVETIGEMELACRFYHGR----IIAITGTNGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V++I  R+G ++   G      +                     L       +++E SS
Sbjct: 119 LVEKILLRAGKTAVACGNYGVPVAEI------------------LLRDSVPDVLALEVSS 160

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+  R          + N   DH+D +++ + Y  AK+ +F+    K         D 
Sbjct: 161 FQLETIR--DFHPDVAVWLNFAPDHMDRYKSVEDYHRAKLHIFDNQTEK---------DL 209

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEF 310
                 +R  +    VL+   +     L     +  +     +++EG        L    
Sbjct: 210 AVVRSGERLPHLKASVLTFSPEDPAADLYYRGPLILEGGAPLLNLEG------TTLNQRH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NA+ A   C  +GI +    E L++      R E V T      +    A   ++LE
Sbjct: 264 NAENAMAAVLACRHLGIPAETAAEVLKEFAPPGHRCETVRTLDGVLWLNDSKATNLHALE 323

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             LK+  +      +++   G D+     P+   +   +    +            +I  
Sbjct: 324 AALKSQHS-----PVILIAGGKDKGLDYVPLRPMLKEKVRACVVF----------GQIAD 368

Query: 431 EIIHGIPGFI--EKGNRIEA-IRTAIEMLNKQDVLV 463
           ++ H     +  EK   +EA +  A  +    D ++
Sbjct: 369 QLQHAFSPAVPTEKAADVEACVAKARSLARPGDTVL 404


>gi|167647631|ref|YP_001685294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           sp. K31]
 gi|189082872|sp|B0T833|MURD_CAUSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167350061|gb|ABZ72796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter sp.
           K31]
          Length = 469

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 85/411 (20%), Positives = 135/411 (32%), Gaps = 55/411 (13%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++        + V+ +   F     +    K P  I+A+TGT+GKS+  + +  +
Sbjct: 79  HPKPHWTVGKAKAAGVEVLGDIELFARTVNAAPEHKKP-KIIAITGTNGKSTTTALIGHL 137

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           C+++G  +   G                         L      G     +E SS+ LD 
Sbjct: 138 CRQAGRDTRVGGNIG-------------------EGVLGLEDMHGGAVYVLELSSYQLDL 178

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +K  A    N+  DH+D H     Y  AK R+F     K   AII  DD + +++
Sbjct: 179 --TSSLKPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLNQ-GKGDTAIIGVDDPWCQQI 235

Query: 257 MKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 A  R +     GK +      L+ V      ++VT   E  D      LPG   
Sbjct: 236 CTEITAANRRTIWPISAGKAMGRGVYALQGVLYDATGERVT---EMADLLRARSLPGRHN 292

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA  A     AIGI +   ++ L     +  R E VG   +   +    A  +++   
Sbjct: 293 WQNAAAAYAAAKAIGIPAHQAVDGLMSFPGLAHRMETVGKLGKVRFVNDSKATNADAARQ 352

Query: 372 ILKNIRTI---------TSGRIIVV----------FGCGGDRDQGKRPIMGKIALDLADI 412
            + +               G   +V                 D GK       A    DI
Sbjct: 353 AMSSYPKFYWIAGGVPKAGGIDDLVDLFPRVAGAYLIGQAAEDFGKTLEGKAPARQCGDI 412

Query: 413 -----AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                A   D     E+   + +        F +   R EA R A+  L K
Sbjct: 413 ETAVAAAYADAVASGEEAVVLLSPACASFDQFADFEQRGEAFRAAVNGLGK 463


>gi|107100001|ref|ZP_01363919.1| hypothetical protein PaerPA_01001022 [Pseudomonas aeruginosa PACS2]
          Length = 448

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 118/350 (33%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ KS+V + V ++   +       G   T +                    
Sbjct: 109 APIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +  +    +E SS  L+    D +     +  N+  DH+D +     Y  AK R+F
Sbjct: 149 LDLLADDIELYVLELSSFQLE--TCDRLNAEVATVLNVSEDHMDRYDGMADYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA ++ ++  +        S G          +     ++ +   
Sbjct: 207 RG----ARQVVVNRADALTRPLIADS----VPCWSFGLNKPDFKAFGLIEEDGQKWLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L+    +  R ++V    +
Sbjct: 259 FDKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQWV-RERQ 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G   Y D   T+    +             +V+   G  +      +   +A     + +
Sbjct: 318 GVSYYDDSKATNVGAALAAIEGLGADIDGKLVLLAGGDGKGADFHDLREPVARFCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 378 L------GRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|15901367|ref|NP_345971.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           TIGR4]
 gi|111658364|ref|ZP_01409051.1| hypothetical protein SpneT_02000443 [Streptococcus pneumoniae
           TIGR4]
 gi|225859278|ref|YP_002740788.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pneumoniae
           70585]
 gi|25008813|sp|Q97PS8|MURC_STRPN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766024|sp|C1C8B2|MURC_STRP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|14973011|gb|AAK75611.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           TIGR4]
 gi|225720652|gb|ACO16506.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           70585]
          Length = 444

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASDLLRSITGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|229163681|ref|ZP_04291629.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803]
 gi|228619818|gb|EEK76696.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 110/378 (29%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSYY------------- 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 163 -------------PDYAIMTNIDFDHPDYFSDINDVFSAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              +++  +           G    F   + +    +     + V    +D F     G 
Sbjct: 207 EELQKIQAKVP---VIFYGFGEDNDFQ-ARNIQKRTDGTIFDVFVRNTYYDTFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D   V   L     V  RF       +   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
              ++  R       ++ VF         K       +L  AD   + D   + R    E
Sbjct: 321 NATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|259907207|ref|YP_002647563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae Ep1/96]
 gi|224962829|emb|CAX54288.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477016|emb|CAY72908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae DSM 12163]
          Length = 450

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 119/357 (33%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I Q  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMTAWILQACGYEPGFV--IGGVPGNFEVSANLGKSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D +   +A       L 
Sbjct: 161 EYDCAFFDKRAKFVHYC------------PRTLILNNLEFDHADIYDDLRAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+   DA  K++M           +VG  G +  +KK+    +  +V + 
Sbjct: 209 -RIVPGQGKIILPEHDANLKQMMSM--GCWSEHEAVGENGCWQ-VKKLSPDASCWEVMLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E +  +  + L GE  + N ++A      +G+        L        R E  G  S 
Sbjct: 265 GE-RVAEVNWSLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRG-ESN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
           G ++Y D+AH   ++   L  +R    G  RI+ V          G        AL  AD
Sbjct: 323 GIKVYDDFAHHPTAIHATLAALRGKVGGTARILAVLEPRSNTMKMGISKDDLAPALGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +   +       ++    I       +    +EAI       +  D ++V   G
Sbjct: 383 EVFLYQPHHIPWQVSEVADACIQPAHWSADIDTLVEAIAKV---AHPGDTILVMSNG 436


>gi|218893505|ref|YP_002442374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa LESB58]
 gi|218773733|emb|CAW29547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 448

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 117/350 (33%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ KS+V + V ++   +       G   T +                    
Sbjct: 109 APIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +  +    +E SS  L+    D +     +  N+  DH+D +     Y  AK R+F
Sbjct: 149 LDLLADDIELYVLELSSFQLE--TCDRLNAEVATVLNVSEDHMDRYDGMADYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA ++ ++           S G          +     ++ +   
Sbjct: 207 RG----ARQVVVNRADALTRPLIAD----TVPCWSFGLNKPDFKAFGLIEEDGQKWLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L+    +  R ++V    +
Sbjct: 259 FDKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFPGLAHRCQWV-RERQ 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G   Y D   T+    +             +V+   G  +      +   +A     + +
Sbjct: 318 GVSYYDDSKATNVGAALAAIEGLGADIDGKLVLLAGGDGKGADFHDLREPVARFCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 378 L------GRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|313893665|ref|ZP_07827233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441809|gb|EFR60233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 456

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 16/280 (5%)

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A         +   + I     N+  DH+  H+T + Y  AK R+FE  L K    +
Sbjct: 159 FLVAELSSYQLETIKHFRPIGAIMLNITPDHLARHKTMENYIAAKERIFENQL-KSDYLV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  DD    ++  RA +   ++      +    +    C +      T  +  KD     
Sbjct: 218 LNIDDPIVADMEHRAPSHILQISQKQTVENGAYYANGQCYVVKNGVATAVIGDKD----I 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   + N L    L  A+G+    +   + + H V  R E V T   G   Y D   
Sbjct: 274 HIPGSHNIENILTVIALTYALGVPVVEIHRIISEFHGVEHRLERVKT-IDGITFYNDSKA 332

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T+  ++ ++K + +       V+   GG           ++        I          
Sbjct: 333 TN--VDSVVKALESFDK---PVILLAGGHDKMTPLEEFMQLVKVKTKAVIFMG----EAA 383

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                A    G+       +  +A+    ++    D++++
Sbjct: 384 ERFEAAAKEAGVEPIYRALSMKDAVEQGYKLAESGDIVLL 423


>gi|238756426|ref|ZP_04617735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia ruckeri ATCC 29473]
 gi|238705356|gb|EEP97764.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia ruckeri ATCC 29473]
          Length = 459

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 121/363 (33%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AV GT GK++ A  V  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVVAVAGTHGKTTTAGMVTWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+  +D + K+VM  A         VG  G +   KKV    +  QV 
Sbjct: 207 LV-RLVPGKGKIILPDNDNHLKQVM--AMGCWSEQEFVGDTGSWS-AKKVTVDASAYQVF 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E    +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDNE-LVGEVNWSLVGEHNMHNGLMAIAAARHVGVQPADACRALADFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R    G   I+                 ++A  L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  ++       I+  +    I T +EM        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVAEVADACIQPASWNADIDTLVEMIVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|304396561|ref|ZP_07378442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
 gi|304356070|gb|EFM20436.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
          Length = 438

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L     +      I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPILSEAVEAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G    Q+G    I                   ALS L S       +
Sbjct: 118 TVTTLVGEMAKAAGW---QVGVGGNIG----------------LPALSLLQSP-AQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E         I+
Sbjct: 158 ELSSFQLE--TTYSLKAAAATVLNVSEDHMDRYPLGMQQYRAAKLRVYEN----AQICIV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      +  + + V+G+        
Sbjct: 212 NADDALTMPV----RGADTRCVSFGVDFGDYHLNK-----QQGSIWLRVKGEKVLNTAEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+    NAL A  L  A+G+  A  L  L   + +  RF+ V  +     I    A 
Sbjct: 263 KMVGQHNYTNALAALALADAVGLPRASSLAALTHFNGLAHRFQLVHEHQGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + +    G  +     P++  +  D   +     D    + 
Sbjct: 323 NVGSTEAALNGLQ--VQGTLWL-LMGGDGKSADFTPLIPWLQGDNVRLYCFGRD---GDA 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R +I       +      +A+      +N  D++++
Sbjct: 377 LAALRPDIA------VRTETMRQAMEQIAPQVNAGDMVLL 410


>gi|255507376|ref|ZP_05383015.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           D(s)2923]
 gi|289525806|emb|CBJ15287.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           Sweden2]
 gi|296435384|gb|ADH17562.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/150]
 gi|296439101|gb|ADH21254.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/11023]
          Length = 803

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 124/377 (32%), Gaps = 50/377 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SS+ S ++       +    VV    + L+  A        +  + VTG+ GK
Sbjct: 64  GAV-VVYSSSISKENPEFLSAKSRGNRVVHRA-ELLAELA------QDQISIFVTGSHGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V+S +  I Q +  +         I    Q+                     G  +  
Sbjct: 116 TTVSSLITAILQEAKKNPSFA-----IGGLNQEGINGGS---------------GSEYFV 155

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA         +          TN+  +H+   +  +    A ++ F   L  +     
Sbjct: 156 AEADESDGS---IRCYTPEFSVITNIDDEHLSNFEGDRELLLASLKDFA--LKTQQICWY 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFL 303
             D    +        +  +  + G       L  +       ++  + + +D    D  
Sbjct: 211 NGDCPRLR--------SCLQGHTFGLDSS-CDLHILSYYQEGWRLYFTAKYQDVVYADIE 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V NA  A G+ +++GID   +         V  R +   ++        DYA
Sbjct: 262 VQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQRKNSSET-FLFLEDYA 320

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPR 421
           H  + +   L+ +RT    R I+   C   R    R  +     A   AD  ++T+    
Sbjct: 321 HHPSEISCTLRAVRTAVRQRRILAI-CQPHRFSRLRECIDSFPSAFKDADEVLLTEVYSA 379

Query: 422 SEDPEKI-RAEIIHGIP 437
            E+ E I   E+   I 
Sbjct: 380 GEEAEDISYQELAEAIS 396


>gi|196232259|ref|ZP_03131113.1| UDP-N-acetylmuramate [Chthoniobacter flavus Ellin428]
 gi|196223627|gb|EDY18143.1| UDP-N-acetylmuramate [Chthoniobacter flavus Ellin428]
          Length = 461

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 104/284 (36%), Gaps = 28/284 (9%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+  DH D      A   +  RL   ++P+    +I  DD    +V   A N 
Sbjct: 183 PELVIVNNIEFDHADIFDNLDAIKLSFRRLL-NIVPESGMVLINGDDKNCIDV---AENC 238

Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             +++ VG+      H+K V    +    T+     D  F   + GE+ V NA +A    
Sbjct: 239 RAQLVEVGFSANASRHIKDVAYDAHGSAFTL----LDTRFTIQMVGEYNVRNAAMAISAA 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITS 381
              GI  + + + +     V  R E  G   RG  +  D+ H   ++   L+ +R    S
Sbjct: 295 HFYGIPLSAIAKAVAAFEGVKRRQEVRG-EVRGMTVIDDFGHHPTAIRETLRGLRHQYPS 353

Query: 382 GRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAI---------VTDDNPRSEDPEKIRAE 431
            R+  +F    +  +          AL  AD  I         +  DN    DP K+ A+
Sbjct: 354 RRLWAIFEPRSNTTRRAVFQHELPAALGEADGVILAQVARMDQLAADN--RLDPAKVVAD 411

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HE 470
           I         + +    I     ++ ++DV+V+   G     HE
Sbjct: 412 IAATGRPAFYEPDVTAIIARLKPLVKERDVIVILSNGGFGGIHE 455


>gi|34540387|ref|NP_904866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis W83]
 gi|62900688|sp|Q7MWM5|MURD_PORGI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|34396700|gb|AAQ65765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis W83]
          Length = 450

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 144/406 (35%), Gaps = 55/406 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------LFASRLYGKHPENILAV 120
           AI++ +   ++  S  I    PI+     R+ ++          FA R        ++ +
Sbjct: 62  AIILEAKEIIK--SPGIPDTAPII-----RQAVAKEIGIVSEIEFAGRYTDAF---MVCI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++   ++     ++GL     G                            ++  
Sbjct: 112 TGSNGKTTTTMWLYHTLCKAGLDVGLAGNVG-------------------FSLARQVAYD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLP 239
              +  +E SS  LD   +   +       N+  DH+D +    + Y  AKMR+     P
Sbjct: 153 PHPYYVIELSSFQLDN--MYDFRANVAILLNITPDHLDRYDHRFELYAEAKMRITRNQQP 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
           ++     + DD +    +   H    R+L    + +       +   +    + ++    
Sbjct: 211 EDCFIY-WEDDPFISRWVAE-HPPVARLLPFAMEARTDNTTAWINEKNELVVMNLNSPFV 268

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + L  L G    +NA+  A    A+ I +  + E L+    VP R E +        I
Sbjct: 269 MDEELLALSGMHNRHNAMATAIAAKAMDIKNEAIREALQDFKNVPHRLEKIARVKGVDYI 328

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               A   NS    L++++T      +++   G D+      I   +   +  +  +  D
Sbjct: 329 NDSKATNVNSTWYALESMKT-----RVILILGGTDKGNDYTDIENLVLSKVDGLIFLGID 383

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           N      EK+       I    +  +  EA+  A +M +K D +++
Sbjct: 384 N------EKLHKFFDGKISRIADACSMHEAVSLAYKMASKGDTVLL 423


>gi|117919243|ref|YP_868435.1| UDP-N-acetylmuramate [Shewanella sp. ANA-3]
 gi|117611575|gb|ABK47029.1| UDP-N-acetylmuramate [Shewanella sp. ANA-3]
          Length = 465

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 113/363 (31%), Gaps = 32/363 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +     I    Q+  ++         
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFL-----IGGVPQNFGVS--------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D      A     
Sbjct: 150 --ARLGESAFFVVEADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQF 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P +   I  AD    K+ +     +           K  H K +    +  +
Sbjct: 208 HHLI-RTVPGQGKVIWPADSHAVKQTIDMGCWSEQETFHTAEVTKGWHAKALSDDCH--E 264

Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +  +G+    L + L G+  + NAL+A      +G+  +  +  L +      R E +
Sbjct: 265 FEVFFDGESQGVLEWALIGQHNIENALMAIAAARHVGVKPSAAIAALTRFVPPKRRLELL 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT   G  +Y D+AH   ++   +K +R       I +                 +A   
Sbjct: 325 GT-VHGVSVYDDFAHHPTAIATTIKGMRAKVGQSKITIVLEPRSNTMKSGVHKDTLA--- 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI----EMLNKQDVLVVA 465
              +++  D       + I   +   +   +     +  I   +          D +VV 
Sbjct: 381 --HSMLQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDVVAKVSASAKVGDTIVVM 438

Query: 466 GKG 468
             G
Sbjct: 439 SNG 441


>gi|314936164|ref|ZP_07843511.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654783|gb|EFS18528.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis subsp.
           hominis C80]
          Length = 437

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 124/360 (34%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +            S  +  +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG--------LPGSDYFAFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H            TN+  DH DY +      +A    F+E+
Sbjct: 155 ------------RRHFLSYH------PDYAIMTNIDYDHPDYFKNIDDVASA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                 AII + DD + + +      A   +   G  +   ++   +    N  Q  + +
Sbjct: 193 ANNVKKAIIAWGDDEHLRNL-----KADVPIYYYGLSKNDDVYADNIQITENGTQFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+ +D FL P  G   V NAL    +     +D   + E LE    V  RF     + +
Sbjct: 248 NGEYYDQFLTPQYGNHNVQNALAVITISYLEKMDVNNIKEALETFGGVKRRFNETFVSKQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R    +  ++ VF                 AL  AD  
Sbjct: 308 --VLVDDYAHHPREISATIETARKKYPNKDVVAVFQPHTFSRTQAFLDEFADALSKADHV 365

Query: 414 IVTDDNP--RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +     R    E    ++I+ I G             +I++L K D  V++  G G 
Sbjct: 366 FLCEIFGSIRENTGELTIQDLINRIDGSALID------ENSIDVLEKFDNAVILFMGAGD 419


>gi|284039008|ref|YP_003388938.1| cyanophycin synthetase [Spirosoma linguale DSM 74]
 gi|283818301|gb|ADB40139.1| cyanophycin synthetase [Spirosoma linguale DSM 74]
          Length = 895

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 118/344 (34%), Gaps = 29/344 (8%)

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           + +G T+T   +  D  +          A   L    V    +E +  G+ +  L   + 
Sbjct: 525 YTVGFTTTEGVYIGDTLIEEGDCTGPVSAEKVLQDPSVEFAVLECARGGMLRSGLAFDQC 584

Query: 205 IAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV------ 256
             G  TN+  DH+      + +     K  +  E +  +  A++ AD+ ++  +      
Sbjct: 585 DVGIVTNVAADHLGLRDINSVEDMARVKA-IVAESVKPDGYAVLNADNPHTYAMRHLVSS 643

Query: 257 ------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 M  A          G          +      Q + +     +    F     F
Sbjct: 644 QVALFSMDPASERIVAHYRAGGLAAVYEDGYITLRRGDQCIQVE-HVNNIPLAFEGKAPF 702

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTS 366
            + N + A        +   L+ E L          PGR        R   + VDYAH  
Sbjct: 703 MIENIMAAVLAAYCQELPFHLIAEGLRSFVPSFENTPGRMNLFCF--RNYCVLVDYAHNP 760

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDP 425
           + +  + + I+   +   + +    GDR       +G++A  L D  I+  D++ R  D 
Sbjct: 761 HGIAALGEYIKQAGAVHKVGILTGVGDRRDEDIIAVGRVAATLFDEIIIRFDEDSRGRDT 820

Query: 426 EKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLV 463
           ++I + I  GI    +        + + A+  AIE + +  ++V
Sbjct: 821 DQIASLIRQGIYEIDQNKPTHIIPDELAALTYAIEHVQESTMIV 864


>gi|227524045|ref|ZP_03954094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088784|gb|EEI24096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 460

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 134/389 (34%), Gaps = 46/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y  +  +  +    PI+            A+++       I+ VTG++GK++  + + +
Sbjct: 83  PYDNEVVARAVSEKMPIITE-------VELAAQMTD---AEIIGVTGSNGKTTTVTMITK 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I                I   A +  L + +   +   LS     G              
Sbjct: 133 ILNEE-RKKGHAYAAGNIGVSATETALKSTADDTIVMELSSFMLLG-------------- 177

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +  +       TN+  +H+DYH+T++ Y NAKMR+     P +   ++  D    ++
Sbjct: 178 ---IKKLHPHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDD-FFVVNFDSDEWRQ 233

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + KR+            +      +K   ++   +  ++ +         +PG+  V NA
Sbjct: 234 LSKRSRAQVVPFARTS-EIDRGAYEKNGKLYYNDEFIMNADD------IKVPGQQNVENA 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A      +G  +  +   LE    V  R +FV   + G + Y D   T   +E     
Sbjct: 287 LAAIATAKILGKSNLAITNVLETFTGVRHRVQFV-LEADGRKFYNDSKAT--DIEATQIA 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +        IV+   G DR      ++ +    +    +        E+  +        
Sbjct: 344 LEGFDHP--IVLLAGGLDRGYTFDKMVPQFKQHVKAAVLFGQTADLLEESLQ-----KAS 396

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    +  N  EA+  A    +  D++++
Sbjct: 397 VKNITKVDNLDEAVPAAYHYSDSGDIILL 425


>gi|70727423|ref|YP_254339.1| hypothetical protein SH2424 [Staphylococcus haemolyticus JCSC1435]
 gi|68448149|dbj|BAE05733.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 686

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 135/381 (35%), Gaps = 37/381 (9%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DG+  + +    G   ++++     +++ + ++   P ++V+++ +     A  +  ++ 
Sbjct: 63  DGNDLVNK--ENGEIGLIIT-----ENYISDLKFEIPQIIVEDSVQAFKQLAIYIRNQYT 115

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG+ GKSS    +  +           G  + + +   +N             L
Sbjct: 116 NPVIAITGSMGKSSTRMLITSLL----------GDYNVLENRGNNNVR----AAIYNNML 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + +     +    ++    ++    +K      T +G  H    ++ +     K R+F
Sbjct: 162 KLIKNPDFAVIETSMNAINYLENTSTFLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRIF 221

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTI 293
           + L      AII  D  Y+  ++ +AH     VL+            V  I +NK  + +
Sbjct: 222 DGLSSTTGVAIINKDTLYADYLIDKAHENASNVLTYSINKDAKADLTVDNIKYNKGSIEL 281

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           S+   E K   +      E  V N L +     ++ +      E L              
Sbjct: 282 SITNQENKSEIYRLNTISEGMVSNTLASILTLKSLNLPIK--QELLNDFKPFSKILALKE 339

Query: 351 TNSR-GGRIYVDYAHTS------NSLEMILKNIRTITSGRIIVVF---GCGGDRDQGKRP 400
            +++      +D  H +      N++       +  +  +II +      G   ++    
Sbjct: 340 IHAKTHKLTLLDDTHNASLPAMINAIRAFNSQTKFYSGHKIIAIGKISDLGRKSNETHLK 399

Query: 401 IMGKIALDLADIAIVTDDNPR 421
           ++ ++    AD  +  D+  R
Sbjct: 400 LVEELENSNADYILCKDNELR 420


>gi|258508763|ref|YP_003171514.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus GG]
 gi|257148690|emb|CAR87663.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus GG]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 109/374 (29%), Gaps = 55/374 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +         +S+ IG   T             +  Y    L+Y 
Sbjct: 106 IGVAGAHGKTSTTGLLAHTLSGVAKTSYLIG-DGTGKGVRDSKFFVFEADEYRRHFLAY- 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+   +  ++A      E 
Sbjct: 164 -------------------------HPDYMIMTNIDFDHPDYYHGFEDVYDAFE---TEA 195

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +   + + DD + +++      A   V   G         + V              
Sbjct: 196 NQVQKAIVAWGDDPWLRKL-----KAKVPVYYYGTSDRDDFQARNVKRDTKGSSFDAYFH 250

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F  PL GE  V NAL    +     +D+ L+   L     V  RF         
Sbjct: 251 DELIGHFFVPLFGEHSVLNALAVVAVAHMEKLDAGLIARELGNFSGVKRRFAEKDLKDM- 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  N ++  L   R       II VF                  L  AD   
Sbjct: 310 -IIVDDYAHHPNEIKATLDAARQKYPDKAIIAVFQPHTYSRTQAYEPQYVQVLSQADQTF 368

Query: 415 VTDD-NPRSEDPEKIR-AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T   +   E   KIR  +I+  I G   I++ +    ++          V+V  G G  
Sbjct: 369 LTPIFSSAREKNGKIRSEDIVAQIKGAAVIQQADMRPLLKF--HHA----VVVFMGAGD- 421

Query: 471 TVHIVTNGEKKMSV 484
               +   EK    
Sbjct: 422 ----IQKYEKAYED 431


>gi|289168335|ref|YP_003446604.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus mitis B6]
 gi|288907902|emb|CBJ22742.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus mitis B6]
          Length = 444

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 94/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G      ++         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASELLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QELGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ +F                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|556014|gb|AAB40043.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 348

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 116/356 (32%), Gaps = 44/356 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + Q +  +SF IG  +   +   +      +  Y    LSY 
Sbjct: 20  VAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGDGTGQGNENSEY-FVFEACEYRRHFLSY- 77

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    +      TN+  DH DY  +    F+A   +  ++
Sbjct: 78  -------------------------QPDYAIMTNIDFDHPDYFSSIDDVFDAFQEMALQV 112

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I   DD +  ++     N        G +  F   + +          + V  
Sbjct: 113 ---NKGIIACGDDEHLPKIHA---NVPVVYYGTGEENDFQ-ARNIVKSTEGTTFDVFVRN 165

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +D F  P  G   V N+L    LC    IDS+++   L+    V  RF       +  
Sbjct: 166 TFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRFNEKQLGDQ-- 223

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +++ ++  R       I+ VF         +       +L  AD   +
Sbjct: 224 VLIDDYAHHPTEIKVTIEAARQKYPDREIVAVFQPHTFTRTQQFLDEFAESLSGADCVYL 283

Query: 416 TDDN-PRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D      E+  K+   ++   I           ++  A +      VL+  G G 
Sbjct: 284 CDIFGSARENAGKLTIGDLQGKIHNAKLIEEDDTSVLKAHDKA----VLIFMGAGD 335


>gi|307708397|ref|ZP_07644863.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis NCTC
           12261]
 gi|307615496|gb|EFN94703.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus mitis NCTC
           12261]
          Length = 444

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 94/300 (31%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +   S      +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGSANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   IY +DA   E+ K   +A         +G      ++         T+   G
Sbjct: 199 T---KGLFIYGEDA---ELRKITSDAPIYYYGFEAEGNDFVASELLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  L+ EHL+    V  RF     N    
Sbjct: 253 QELGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLLREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ +F                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALNQADAVYL 370


>gi|328955355|ref|YP_004372688.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
 gi|328455679|gb|AEB06873.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
          Length = 470

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 45/376 (11%)

Query: 102 LSLFASRLYGKH-------PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
               A+ + G+        PE  +AVTGT+GK++  S   Q+   + +    +G     +
Sbjct: 90  ARAHAAEIMGEPEFAWRLSPERWIAVTGTNGKTTTVSLTGQLLSAARIPCEVVGNIGETA 149

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
               D R                           A                A    N+  
Sbjct: 150 ISQVDRRQ--------------------DGDWFVAELSSYQLATTSEFHPRAAVLLNITP 189

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+ +H+  + Y  AK+++  + L +   AII  DD   + +  +   +  R+L +    
Sbjct: 190 DHLRWHRGFENYARAKLKIL-QNLDENDLAIIDVDDPGLRRLGSQVIASHRRILRL---A 245

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                    A     ++ + ++G + D        + G   V NAL A+   +  G   A
Sbjct: 246 HDDPASVDAAFVRAGRLVVRLDGIEHDLARVSELAVAGAHNVSNALAASASALLAGASDA 305

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFG 389
            V E L     +  R E  G +  G R Y D  A  ++++E  L        G  +++  
Sbjct: 306 AVSEGLRAFSSLEHRMEPAG-DIDGVRFYNDSKATNTDAVEKALTAF----PGDRVILLL 360

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEA 448
            G D+         ++   +  +        R  D     A    G+     E  + ++A
Sbjct: 361 GGYDKGTPLHGFATRVVQQIGAVVCFGQARRRFMDAMTGAA---SGLDVDVAEADDLLDA 417

Query: 449 IRTAIEMLNKQDVLVV 464
           +  A  +  + DV+++
Sbjct: 418 VDVARSLACRGDVILL 433


>gi|324993645|gb|EGC25564.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK405]
 gi|324995043|gb|EGC26956.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK678]
          Length = 444

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   + +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLDLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|310765303|gb|ADP10253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Erwinia sp. Ejp617]
          Length = 450

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 118/357 (33%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I Q  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMTAWILQACGYEPGFV--IGGVPGNFEVSANLGKSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D +   +A       L 
Sbjct: 161 EYDCAFFDKRAKFVHYC------------PRTLILNNLEFDHADIYDDLRAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+   DA  K++M           +VG +     +KK+    +  +V + 
Sbjct: 209 -RIVPGQGKIILPEHDANLKQMMSM--GCWSEHEAVG-ENSCWQVKKLSPDASCWEVMLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E +  +  + L GE  + N ++A      +G+        L        R E  G  S 
Sbjct: 265 GE-RVAEVKWSLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRG-ESN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
           G ++Y D+AH   ++   L  +R    G  RI+ V          G        AL  AD
Sbjct: 323 GIKVYDDFAHHPTAIHATLAALRGKVGGTARILAVLEPRSNTMKMGISKDDLAPALGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +   +       ++    I       +    +EAI       +  D ++V   G
Sbjct: 383 EVFLYQPHHIPWQVSEVADACIQPAHWSADIDTLVEAIAKV---AHPGDTILVMSNG 436


>gi|254292767|ref|YP_003058790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hirschia
           baltica ATCC 49814]
 gi|254041298|gb|ACT58093.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hirschia baltica
           ATCC 49814]
          Length = 474

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 120/324 (37%), Gaps = 32/324 (9%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V+S      Y        +     + VV +   F    A       P  I+ +TGT+
Sbjct: 67  SALVLSPGIPFKYPEPHRVVKMAKMVGVPVVGDMELFARAVAELPAYARP-KIVGITGTN 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  I +R+G      G                         L   +    + 
Sbjct: 126 GKSTTTALIGHILERAGRDVRVGGNIGV-------------------GVLDLKAMNANSI 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ LD   +D ++     F N+  DH+D H   Q Y  AK R+F      +  A
Sbjct: 167 YVLELSSYQLDL--IDSLRCDVAVFLNVSPDHLDRHGGMQGYVAAKNRIFRNQTSAD-TA 223

Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF 302
           +I  DD  ++ +  R A     RV  V  +        V        ++   E   D   
Sbjct: 224 VIGVDDMRTQILCTRLAAENTRRVCPVSAEMALGRGVSVLEGMLSDSLSGHAETSVDLSS 283

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG+    NA  A   C ++G+D++ +++ L     +  R E VG  S  G  +V+ 
Sbjct: 284 ARALPGQHNHQNAAAAYAACQSLGLDASEIIDGLNSFPGLEHRLESVG--SVNGVAFVND 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIV 386
           +  +NS     + +R   +   I 
Sbjct: 342 SKATNSQAAE-QALRAYPNAFWIA 364


>gi|189501429|ref|YP_001960899.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
 gi|226711894|sp|B3EQC0|MURD_CHLPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189496870|gb|ACE05418.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 466

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 124/369 (33%), Gaps = 41/369 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS      P  I+ +TGT GK++ +S V+ IC                 S A      
Sbjct: 100 EAASWFC---PAFIIGITGTDGKTTTSSMVEAIC----------------LSGANSREQR 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
             S   +    S L  +                 R    +      TN+  DH+D +  +
Sbjct: 141 VFSAGNIGVPFSSLVGEMRKGDIAVVELSSYQLERCRSFRPDVAVITNIMPDHLDRYGGS 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AK R++ +   +++     ADD   +   +       +++      K   L   
Sbjct: 201 MKRYAEAKYRIYAQQRKQDTLVY-NADDETLRAHFEGGGAFVPQLVPFSLDRKRASLGGA 259

Query: 283 CAIHNKQQVTISV-EGKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           C    +    I+V  G++   +           G   + NAL A     A G+D   + E
Sbjct: 260 CYAAIEGDWLITVVNGREEKVITGSGLFKRSFRGRHNLENALAAVAATRAAGVDVFPIRE 319

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L +   V  R E+V T      I    A   N+L   L      T G+++++   G D+
Sbjct: 320 ALRRFAGVEHRQEYVRTMHGVDWINDSKATNLNALRQALDA----TPGKLVLI-AGGRDK 374

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 +  ++   ++ + +  +   +         E    +   +   +  EA+  A  
Sbjct: 375 GDDLSDLEERVRQKVSVLVVFGESKAKF-------TEAFSSVVRVVPALSLEEAVEQAQR 427

Query: 455 MLNKQDVLV 463
             +  + ++
Sbjct: 428 YASTGETVL 436


>gi|301053716|ref|YP_003791927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis CI]
 gi|300375885|gb|ADK04789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 250

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 22/169 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 8   MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNIKEGNLFVPII--RVKDGHEY 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       +     PI+ VD+T   L   A     +    ++ 
Sbjct: 60  VKEAMDNGAIASLWKKSYG------SPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIG 113

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNR 161
           +TG++GK++V   ++ I        +  G  + QIG   TI    +D  
Sbjct: 114 ITGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTE 162


>gi|229552566|ref|ZP_04441291.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314118|gb|EEN80091.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           LMS2-1]
 gi|259650069|dbj|BAI42231.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus GG]
          Length = 437

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 109/374 (29%), Gaps = 55/374 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +         +S+ IG   T             +  Y    L+Y 
Sbjct: 107 IGVAGAHGKTSTTGLLAHTLSGVAKTSYLIG-DGTGKGVRDSKFFVFEADEYRRHFLAY- 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+   +  ++A      E 
Sbjct: 165 -------------------------HPDYMIMTNIDFDHPDYYHGFEDVYDAFE---TEA 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +   + + DD + +++      A   V   G         + V              
Sbjct: 197 NQVQKAIVAWGDDPWLRKL-----KAKVPVYYYGTSDRDDFQARNVKRDTKGSSFDAYFH 251

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F  PL GE  V NAL    +     +D+ L+   L     V  RF         
Sbjct: 252 DELIGHFFVPLFGEHSVLNALAVVAVAHMEKLDAGLIARELGNFSGVKRRFAEKDLKDM- 310

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  N ++  L   R       II VF                  L  AD   
Sbjct: 311 -IIVDDYAHHPNEIKATLDAARQKYPDKAIIAVFQPHTYSRTQAYEPQYVQVLSQADQTF 369

Query: 415 VTDD-NPRSEDPEKIR-AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T   +   E   KIR  +I+  I G   I++ +    ++          V+V  G G  
Sbjct: 370 LTPIFSSAREKNGKIRSEDIVAQIKGAAVIQQADMRPLLKF--HHA----VVVFMGAGD- 422

Query: 471 TVHIVTNGEKKMSV 484
               +   EK    
Sbjct: 423 ----IQKYEKAYED 432


>gi|228475935|ref|ZP_04060644.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis SK119]
 gi|228270006|gb|EEK11480.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis SK119]
          Length = 439

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 121/360 (33%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T       +     +  Y    LSY 
Sbjct: 106 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPGSDYFAFEACEYRRHFLSY- 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY +      +A    F+E+
Sbjct: 164 -------------------------HPDYAIMTNIDYDHPDYFKNIDDVASA----FQEM 194

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                 AII + DD + + +      A   +   G  +   ++   +    N  Q  + +
Sbjct: 195 ANNVKKAIIAWGDDEHLRNL-----KADVPIYYYGLSKNDDVYADNIQITENGTQFDVYI 249

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+ +D FL P  G   V NAL    +     +D   + E LE    V  RF     + +
Sbjct: 250 NGEYYDQFLTPQYGNHNVQNALAVITISYLEKMDVNNIKEALETFGGVKRRFNETFVSKQ 309

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R    +  ++ VF                 AL  AD  
Sbjct: 310 --VLVDDYAHHPREISATIETARKKYPNKDVVAVFQPHTFSRTQAFLDEFADALSKADHV 367

Query: 414 IVTDDNP--RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +     R    E    ++I+ I G             +I++L K D  V++  G G 
Sbjct: 368 FLCEIFGSIRENTGELTIQDLINRIDGSALID------ENSIDVLEKFDNAVILFMGAGD 421


>gi|325695121|gb|EGD37023.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK150]
          Length = 444

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 105/347 (30%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVA 130
           +   + +   +A    N   +   +             G    + +++   G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGSFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|295135636|ref|YP_003586312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
           profunda SM-A87]
 gi|294983651|gb|ADF54116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
           profunda SM-A87]
          Length = 445

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 131/390 (33%), Gaps = 49/390 (12%)

Query: 83  SATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           S  I    P++     +         FA++        I+ +TG++GK++       I +
Sbjct: 70  SPGIPDTVPMIKALRAKGIPVISEIEFAAQYT---SAVIVGITGSNGKTTTTKLTHHILK 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             GL     G                            ++     +  +E SS  LD   
Sbjct: 127 DGGLQVGMAGNVG-------------------DSFAKQVAETNAGYYVLELSSFQLD--G 165

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           ++  +      TN+  DH+D ++   + Y  AK R+ +    K+   I  ADD      +
Sbjct: 166 IEKFRPHIAVLTNITPDHLDRYEYKFENYIEAKFRITKNQT-KDDYFIYDADDEVITNWL 224

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYN 314
           K  +    ++L    +       +  A      + I  E  +         L G+    N
Sbjct: 225 K-TNKIEAQLLPFSLE----RKLENGAYLENDTIIIKTENTELTMATSDLTLQGKHNTKN 279

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ AA +   + I    + E +E    V  R E V   +    I    A   N       
Sbjct: 280 AMAAATVAKLLKIRKNTIRESMESFQGVEHRLEKVLKINNVQYINDSKATNVN---ATYY 336

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            + ++    + ++   G D+      ++  +   +  I  +  DN       KI     +
Sbjct: 337 ALESMEGQTVWIL--GGVDKGNVYDELLPLVNEKVKAIICLGVDNT------KIMNSFGN 388

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   IE  +  EA++ A  +  K D +++
Sbjct: 389 CVETLIETQSMSEAVKMAYRLSEKGDTVLL 418


>gi|218532974|ref|YP_002423790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium chloromethanicum CM4]
 gi|218525277|gb|ACK85862.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           chloromethanicum CM4]
          Length = 455

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 103/324 (31%), Gaps = 47/324 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATI------RSNTPIL----VVDNTRKFLSLFASRLYGKHPEN 116
           G  A+V++    L             ++  PI+    +    R  L+             
Sbjct: 65  GFSALVLAPGVPLTHPEPHWTVGLARQAGIPIIGDIEIFCRERAALA---------PDAP 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TGT+GKS+  +    + + +G      G   T                     LS 
Sbjct: 116 FVAITGTNGKSTTTALTAHLLRHAGRDVQMGGNIGT-------------------AILSL 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VE SS  +D      +K   G   NL  DH+D H T + Y   K RL   
Sbjct: 157 EPPAATRVHVVELSSFQIDL--TPSLKPGVGILLNLTPDHLDRHGTMENYAAIKERLVAG 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  A+I  DD Y   + +R      R+   G+                    +   
Sbjct: 215 ----ADLAVIGVDDPYCAAIAERRTGERIRLHIEGHGDAAGDYVGANGTVRGPDGAVIA- 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +   +  L G+  + NA  A    I +G+ SA +   L+    +  R E +       
Sbjct: 270 --EVSGIQALLGDHNLQNAAAAVAAAIRLGLSSAEIAAGLKSFPGLAHRMEPLRRIGPTL 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT 380
            +    A  ++S E  L   R I 
Sbjct: 328 FVNDSKATNADSTEKALLAFRDIH 351


>gi|313905181|ref|ZP_07838549.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
 gi|313469934|gb|EFR65268.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
          Length = 452

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 118/357 (33%), Gaps = 48/357 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +LAVTGT+GK++  + + +I +      + +G   T  +                    
Sbjct: 108 KVLAVTGTNGKTTTVTLLGEIMKDYYPEVYVVGNIGTPYT-------------------- 147

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  Q   +    A         ++    +A + TN+  DH++ H T + Y   K R+ E
Sbjct: 148 DVVLQQTENAWTVAEVSSFQMETIEEFHPVASALTNITEDHLNRHHTMEEYIRCKARVTE 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++   + Y D+     +   A     +V+    +     + +         + +  
Sbjct: 208 NQTAEDCCVLNYEDEV----LRPFAEKVNAKVIFFSSR----RVLEKGIYLEGDTIRLKD 259

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            G+  D +      L G     N +VA  +    G+    +   +     V  R EFV  
Sbjct: 260 GGEVIDVVKTGDLQLLGLHNFENVMVAVAMAYFAGVPMDSIRRTICAFRGVEHRIEFV-E 318

Query: 352 NSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +G R Y D      ++    ++ +   T      + G G D+       +      + 
Sbjct: 319 EKKGVRYYNDSKGTNPDAAIKGIQAMDRPT-----CLIGGGFDKQLPFDDWINAFDGKVK 373

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH-GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A++       +  + I       G P        N  EA++       + D +++
Sbjct: 374 FFALI------GQTAQTIAGTAERLGFPKEKIAFCDNLEEAVKACASHAVEGDAVLL 424


>gi|238918401|ref|YP_002931915.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase, [Edwardsiella ictaluri 93-146]
 gi|238867969|gb|ACR67680.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase, putative [Edwardsiella ictaluri 93-146]
          Length = 458

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 118/362 (32%), Gaps = 36/362 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+ GT GK++ A  V  I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVIAIAGTHGKTTTAGMVNWILESCGYEPGFV--IGGVPGNFSVSARLGNSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLRAIQRQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+ A DA  K+VM     +   +      G            +    ++S
Sbjct: 209 -RLVPGKGRIILPAGDASLKQVMAMGCWSEQELC-----GDEAAWNVTRLSADASHFSVS 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G    +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGACVGEVQWTLVGEHNMHNGLMAIAAARHVGVPPAEACRALGSFINARRRLELRG-QA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLA 410
            G  +Y D+AH   ++   L  +R    G  RI+ V     +  +          AL  A
Sbjct: 322 HGVSVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGVCKNELAPALGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
           D   +         P+ I  +++      ++      +    +   ++     D ++V  
Sbjct: 382 DEVYLYQ-------PQHIPWQVVEVAEACVQPAYWSADLGTLVEMIVKNAQPGDHILVMS 434

Query: 467 KG 468
            G
Sbjct: 435 NG 436


>gi|318042232|ref|ZP_07974188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CB0101]
          Length = 462

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 103/314 (32%), Gaps = 30/314 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               +          + +TGT+GK++V   +  + +++GL +   G     ++     R 
Sbjct: 103 GEITTAWEASAGVPWIGITGTNGKTTVTHLIAHLLEQAGLDAPMCGNVGFSAAELALARS 162

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              +P +L   LS    +                     +    G +T L  DH++ H T
Sbjct: 163 GANAPTWLVVELSSYQIESA-----------------PALAPRIGVWTTLTPDHLERHGT 205

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y   K      LL   +  ++ ADD   +   + A     R ++   + +       
Sbjct: 206 LDNYRAIK----RSLLEHSTVRVLNADDPDLRS--RAASWDQARWVTAESREQARAAGIE 259

Query: 283 CAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             +  +        G         +PG     N L+A  + + +G+ +  +   L     
Sbjct: 260 PHLWIEANQVCQASGPLLPADALAMPGAHNRQNMLMAVAVGLEVGLSAEQMAAALRCFPG 319

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R E +             A   ++ E+ L+ ++        +V   GG+  QG+   
Sbjct: 320 VPHRLELIRERDGVRWFNDSKATNYDAAEVALRALQG------PLVVLAGGEAKQGEAAG 373

Query: 402 MGKIALDLADIAIV 415
                   A   ++
Sbjct: 374 WLAGLEREARAVVL 387


>gi|152992426|ref|YP_001358147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum
           sp. NBC37-1]
 gi|151424287|dbj|BAF71790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum
           sp. NBC37-1]
          Length = 485

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 119/356 (33%), Gaps = 39/356 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +T + GK+S+ ++++ + +    +       +T+    +D     P    +      
Sbjct: 155 VVGITASYGKTSIKNYIEHLLKAKYRTYATPRSVNTLGGVMKDINDDLPEDTEVY----- 209

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   V + A   G        +         +G  HI+Y +T +   N KM + + 
Sbjct: 210 -------VVEMGARGEGDIAEITTFVNPQYVVVGKIGPAHIEYFKTMENIRNTKMEILQS 262

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              KE+     A     K +          + + G       +K + A  +    T+   
Sbjct: 263 HRLKEAWIHESAMVKPEKNIHIFGTGENLDMKT-GLPAPEYLIKDIEATLDATSFTLD-- 319

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   + G F   N   A  +   +G+    + + L  L  V  R + +     GG
Sbjct: 320 --GVRYSASILGAFNAMNLAAAVLVAKKLGLSDEEIQQGLSTLKAVDHRLQRIDA---GG 374

Query: 357 RIYVDY--AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           ++ +D       + +        T   GR +V+     + D      + K A ++ D+ +
Sbjct: 375 KVILDDSFNGNIDGMMASFDLASTYA-GRKVVITPGLVEVDDELNMQVAKRANEVFDLVV 433

Query: 415 VTDD-----NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           VT D          DPEK+       +    E  +        +E     D+++ A
Sbjct: 434 VTGDLNYAIFKEHVDPEKLVK-----LASKSEMESM------LVEQTLPGDLILFA 478


>gi|88801285|ref|ZP_01116813.1| UDP-N-acetylmuramate--L-alanine ligase [Polaribacter irgensii 23-P]
 gi|88781943|gb|EAR13120.1| UDP-N-acetylmuramate--L-alanine ligase [Polaribacter irgensii 23-P]
          Length = 450

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 124/361 (34%), Gaps = 54/361 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ ++ +  I   +  +SF  G     +                    + L
Sbjct: 115 LAVAGTHGKTTTSAILGHIMVTANATSFLGGIAENYN--------------------ANL 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G T   VEA     D+  L  +       T++  DH+D ++  +A   + +     +
Sbjct: 155 ILGGDTISVVEADEF--DRSFLQ-LSPNIACVTSMDADHLDIYENPEALTASFIEFASRV 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                            + +  A     + L+    +        +          I+  
Sbjct: 212 T----------------QTLIVAKGLPLKGLTYAINEPADYRAFNLRIESGTCLFDIATP 255

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               +   F +PG   + NAL A  +    GI    + + LE    V  RF +    +  
Sbjct: 256 SSIIEKISFDVPGRHNIMNALAAIAMADVYGISLENIKKCLETFKGVARRFSY-KIKTEN 314

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH   ++  +  ++R +     I+VVF                +AL+  D  +
Sbjct: 315 FVLIDDYAHHPTAIYAVESSVREMYPDAEILVVFQPHLYSRTRDFIDDFALALNKFDAIL 374

Query: 415 VTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIR----TAIEMLNKQDV-LV 463
           + D  P  E P        + ++I +      +K N ++ I+      + ML   D+ ++
Sbjct: 375 LLDIYPAREIPIPGVDSSWLLSKIENPHKKLTQKNNLLKDIKNSSAKVVVMLGAGDIGVL 434

Query: 464 V 464
           V
Sbjct: 435 V 435


>gi|15599610|ref|NP_253104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAO1]
 gi|152985250|ref|YP_001350322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PA7]
 gi|254238923|ref|ZP_04932246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|254244775|ref|ZP_04938097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|296391123|ref|ZP_06880598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAb1]
 gi|30316126|sp|Q9HVZ9|MURD_PSEAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|9950646|gb|AAG07802.1|AE004856_13 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126170854|gb|EAZ56365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|126198153|gb|EAZ62216.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|150960408|gb|ABR82433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PA7]
          Length = 448

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 117/350 (33%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ KS+V + V ++   +       G   T +                    
Sbjct: 109 APIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +  +    +E SS  L+    D +     +  N+  DH+D +     Y  AK R+F
Sbjct: 149 LDLLADDIELYVLELSSFQLE--TCDRLNAEVATVLNVSEDHMDRYDGMADYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA ++ ++           S G          +     ++ +   
Sbjct: 207 RG----ARQVVVNRADALTRPLIAD----TVPCWSFGLNKPDFKAFGLIEEDGQKWLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L+    +  R ++V    +
Sbjct: 259 FDKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQWV-RERQ 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G   Y D   T+    +             +V+   G  +      +   +A     + +
Sbjct: 318 GVSYYDDSKATNVGAALAAIEGLGADIDGKLVLLAGGDGKGADFHDLREPVARFCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 378 L------GRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|187931943|ref|YP_001891928.1| Mur ligase family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712852|gb|ACD31149.1| Mur ligase family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 561

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 132/378 (34%), Gaps = 29/378 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH+  D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKV 282
             AK  +F  L  + S  II  D++Y KE   +   A   V     Q    +        
Sbjct: 283 AEAKSIVFRAL-GQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYA 341

Query: 283 CAIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           C + +   V +    K       +         +  + NA++A  L   + I   ++ + 
Sbjct: 342 CIVEDGNFVWVEANFKKVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLDISFDVIEKA 401

Query: 336 LEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG 392
           L          R              +DYAH    +E +L  ++     G+  ++ G  G
Sbjct: 402 LRSYSNDPKVNRGRANIFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTG 461

Query: 393 DRDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKG 443
           DR      I   +     D  ++  T+   R     E P  IR ++      I       
Sbjct: 462 DRKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISH 521

Query: 444 NRIEAIRTAIEMLNKQDV 461
             I+ ++  +E L   D+
Sbjct: 522 GEIDGVKFLVEKLESNDM 539


>gi|154250395|ref|YP_001411220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769434|sp|A7HNT0|MURD_FERNB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154154331|gb|ABS61563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
          Length = 420

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 142/383 (37%), Gaps = 66/383 (17%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                I+AVTG+ GKS+  + +  +  +S  S           +F               
Sbjct: 99  DWKPKIIAVTGSVGKSTTVAMINHLISKSASSQIS-------GNFGIPIAQV-------- 143

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                L  +   ++ VE SS  L  +     K      TN+  +H+D+H + + Y ++K 
Sbjct: 144 ----LLEGKKPEYIVVEISSFQL--YWTPFFKPNVAVITNIYPNHLDWHPSMEHYVDSKF 197

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++ +    ++       D    K +                           A+   ++V
Sbjct: 198 KITKFQDNEDHFVYNPKDMETFKRL---------------------------ALVQAKRV 230

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             +V+ K  +  F +  +  + N   A  +   +G+  ++ +  LE    +P R E+ GT
Sbjct: 231 PFTVDFKFEEIPFHIRTKQNMENIAAAKTVLKVLGLPFSMSM--LEDFTPLPHRMEYCGT 288

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G   Y D   T+ +   ++K +    +   +++ G G + D     +  +I+     
Sbjct: 289 -INGAHYYNDSKATNAA--AVVKALENFDNNLYLIIAGKGKNEDYS--KLANEISKKCKF 343

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV--AGKGH 469
           +AIV   +   E   K R         +    N  EA+    +M  + D +++  AG  +
Sbjct: 344 VAIVGPISDAVEPYLKERN------VNYKRFSNIEEAVFEISKMAKEGDYVLLGPAGASY 397

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           +      N E++ +   +I++++
Sbjct: 398 DAY---KNFEERGNHFKEIVKKL 417


>gi|148828296|ref|YP_001293049.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
 gi|166224763|sp|A5UIR0|MURD_HAEIG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148719538|gb|ABR00666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
          Length = 437

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 128/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R+           ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLRI----HHNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N     +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---RLTFGENENQAKHTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+ V   + G R   D   T+    
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVH-QANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     +++ G G   D      + ++      I           D     A
Sbjct: 328 VAALAGLYIEGKLHLLLGGDGKGADFS---ELAELINQPHIICYC-----FGRD----GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   D++++
Sbjct: 376 QLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|304396923|ref|ZP_07378803.1| UDP-N-acetylmuramate [Pantoea sp. aB]
 gi|304355719|gb|EFM20086.1| UDP-N-acetylmuramate [Pantoea sp. aB]
          Length = 450

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 117/358 (32%), Gaps = 28/358 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +   L    I     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMAAWILEACALEPGFI--IGGVPGNFDVSAKLGKSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLRAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   ++   D   K+VM  A        SVG  G++   K     ++     I 
Sbjct: 209 -RIVPGQGKILLPEHDPNLKQVM--AMGCWSEQESVGEHGRWQAKK---LTNDASHWEIW 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+   +  + L GE  ++N L+A      +G+      + L        R E  G   
Sbjct: 263 LDGEKVGEVNWGLVGEHNMHNGLMAIAAARHVGVKPEDAGQALNTFINARRRLELRG-EV 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
              ++Y D+AH   ++   L  +R+   G  RI+ V          G        +L  A
Sbjct: 322 NSIKVYDDFAHHPTAILATLAALRSKVGGRARILAVLEPRSNTMKMGVSKNDLAPSLARA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D   +   +     P ++       IP      +    +   ++     D ++V   G
Sbjct: 382 DEVFLFQPH---HIPWQVSDVAEACIPPAHWSADIDTLVEMVVKAAQPGDTILVMSNG 436


>gi|317046898|ref|YP_004114546.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. At-9b]
 gi|316948515|gb|ADU67990.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. At-9b]
          Length = 491

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 134/429 (31%), Gaps = 51/429 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKF-----LSLFASRLYGKHPEN 116
           GA         ++ D S  + S     + P LV    ++        + A  +  +H   
Sbjct: 64  GATIYFNHRPENVTDASVVVVSTAVAQDNPELVAAREQRIPVIRRAEMLAELMRFRHG-- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  + V  I    GL    +      ++          S  YL   ++ 
Sbjct: 122 -IAIAGTHGKTTTTAMVASIYAEGGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAE 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + +                ++ +    TN+  DH+D +Q            F  
Sbjct: 175 ADESDASFL---------------HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLH 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    A++  DD   ++++ R                                 I  +
Sbjct: 220 NLPFYGRAVMCVDDVVIRDLIPRV-GRQLTTYGFSEDADVRVENYEQRGAQGHFTLIRHD 278

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----- 351
                     PG     NA  A  +    GID   +L  LE       RF+ +G      
Sbjct: 279 KPVLHVTLNAPGRHNALNAAAAVAVATEEGIDDNAILAALESFQGTGRRFDLLGEFDTAP 338

Query: 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                    +  DY H    +++ +K  R      ++++VF                  L
Sbjct: 339 VNGTPGSAMLVDDYGHHPTEVDVTIKAARAGWPEKKLVMVFQPHRYTRTRDLFDDFANVL 398

Query: 408 DLADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIEK----GNRIEAIRTAIE-MLNKQD 460
              D+ ++ D  P  E   P      +   I G  +      +  +A+  A+  +L+  D
Sbjct: 399 SQVDVLLMLDVYPAGETAIPGADSRSLCRAIRGRGKVDPILVSEHDALPEALAPLLSGND 458

Query: 461 VLVVAGKGH 469
           +++V G G+
Sbjct: 459 LVIVQGAGN 467


>gi|167755735|ref|ZP_02427862.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
 gi|167704674|gb|EDS19253.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
          Length = 446

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 128/350 (36%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ + VTGT+GK++  + + +I +         G   T              P+      
Sbjct: 108 QHYIGVTGTNGKTTTVTLIDKILKGQYQHVHLAGNVGT--------------PLCDVVLD 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L ++   +V +E S+  L    ++  K    +  NL  DH+DY  +   Y+ +K  ++
Sbjct: 154 NDLLNEENHYVVIEMSNFQLLD--IERFKPYVSTIINLTPDHLDYMASLDEYYASKTNIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +   ++  DD    E +++     C  +++    +   + K  AI+ + ++ I+
Sbjct: 212 KN-TDLDDYFVVNLDDKTVMEYLEKYP-VPCNQVTMSLIHEADCMIKEQAIYYRDELIIN 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +          + G   + N + A  +     +   ++   +     V  R EFV     
Sbjct: 270 LAD------IKVVGRHNIQNIMTAICIAKKCDVPVTVINREIASFIGVEHRIEFV-REIN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G +IY D   T+   +  +  ++      I+++ G     D  +    G     ++ +  
Sbjct: 323 GVKIYNDSKATNT--DATIIALKAFEQPVILLMGGFDKGLDLTEMATYGN---KISHLVT 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 R ++           +       N   A   AIE     D++++
Sbjct: 378 FGAAGERFKNDM--------HVANSSSVENLEAATLLAIEKAKAGDIILL 419


>gi|261338918|ref|ZP_05966776.1| hypothetical protein ENTCAN_05116 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318743|gb|EFC57681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 438

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPSLSAAADAGVEIVGDIELF--------CREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  +G     +
Sbjct: 118 TVTTLVGEMAKAAGMNVGVGGNIGLPALM--------------------LLDKGCELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTTSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +           + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADDRCISFGITMGDYHLNRQLGETW-----LRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  +  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAVGLPRSSSLQALTTYSGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +      +   +A D   +     D     +
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSSLKQYLAGDNIRLYCFGRD---GGE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R EI        +     +A+R     +   D++++
Sbjct: 377 LAQLRPEIAE------QTETMEQAMRLIAPRVQPGDMVLL 410


>gi|308185657|ref|YP_003929788.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
 gi|308056167|gb|ADO08339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
          Length = 438

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L     +      I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPILSEAVEAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G    Q+G    I                   ALS L S       +
Sbjct: 118 TVTTLVGEMAKAAGW---QVGVGGNIG----------------LPALSLLQSP-AQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E         I+
Sbjct: 158 ELSSFQLE--TTHSLKAAAATVLNVTEDHMDRYPLGMQQYRAAKLRVYEN----AQICIV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      +  + + V+G+        
Sbjct: 212 NADDALTMPV----RGADKRCVSFGVDFGDYHLNK-----QQGSIWLRVKGEKVLNTAEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+    NAL A  L  A+G+  A  L  L + + +  RF+ V  +     I    A 
Sbjct: 263 KMAGQHNYTNALAALALADAVGLPRASSLAALTQFNGLAHRFQLVHEHQGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + +    G  +     P++  +  D   +     D    + 
Sbjct: 323 NVGSTEAALNGLQ--VQGTLWL-LMGGDGKSADFTPLIPWLQGDNVRLYCFGRD---GDA 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R +I       +      +A+      +   D++++
Sbjct: 377 LAALRPDIA------VRTETMRQAMEQIAPQVKAGDMVLL 410


>gi|332362234|gb|EGJ40034.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1056]
          Length = 444

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   + +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGIGYKRYHEFLGSFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|237734701|ref|ZP_04565182.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mollicutes
           bacterium D7]
 gi|229382029|gb|EEO32120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coprobacillus
           sp. D7]
          Length = 446

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 128/350 (36%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ + VTGT+GK++  + + +I +         G   T              P+      
Sbjct: 108 QHYIGVTGTNGKTTTVTLIDKILKGQYQHVHLAGNVGT--------------PLCDVVLD 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L ++   +V +E S+  L    ++  K    +  NL  DH+DY  +   Y+ +K  ++
Sbjct: 154 NDLLNEENHYVVIEMSNFQLLD--IERFKPYVSTIINLTPDHLDYMASLDEYYASKTNIY 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +   ++  DD    E +++     C  +++    +   + K  AI+ + ++ I+
Sbjct: 212 KN-TDLDDYFVVNLDDKTVMEYLEKYP-VPCNQVTMSLIHEADCMIKEQAIYYRDELIIN 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +          + G   + N + A  +     +   ++   +     V  R EFV     
Sbjct: 270 LAD------IKVVGRHNIQNIMTAICIAKKCDVPVTVINREIASFIGVEHRIEFV-REIN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G +IY D   T+   +  +  ++      I+++ G     D  +    G     ++ +  
Sbjct: 323 GVKIYNDSKATNT--DATIIALKAFEQPVILLMGGFDKGLDLTEMATYGN---KISHLVT 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 R ++           +       N   A   AIE     D++++
Sbjct: 378 FGAAGERFKNDM--------HVANSSSVENLEAATLLAIEKAKAGDIILL 419


>gi|258539939|ref|YP_003174438.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus Lc
           705]
 gi|257151615|emb|CAR90587.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus Lc
           705]
          Length = 436

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 109/374 (29%), Gaps = 55/374 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +         +S+ IG   T             +  Y    L+Y 
Sbjct: 106 IGVAGAHGKTSTTGLLAHTLSGVAKTSYLIG-DGTGKGVRDSKFFVFEADEYRRHFLAY- 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+   +  ++A      E 
Sbjct: 164 -------------------------HPDYMIMTNIDFDHPDYYHGFEDVYDAFE---TEA 195

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +   + + DD + +++      A   V   G         + V              
Sbjct: 196 NQVQKAIVAWGDDPWLRKL-----KAKVPVYYYGTSDRDDFQTRNVKRDTKGSSFDAYFH 250

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F  PL GE  V NAL    +     +D+ L+   L     V  RF         
Sbjct: 251 DELIGHFFVPLFGEHSVLNALAVVAVAHMEKLDAGLIARELGNFSGVKRRFAEKDLKDM- 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  N ++  L   R       II VF                  L  AD   
Sbjct: 310 -IIVDDYAHHPNEIKATLDAARQKYPDKAIIAVFQPHTYSRTQAYEPQYVQVLSQADQTF 368

Query: 415 VTDD-NPRSEDPEKIR-AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T   +   E   KIR  +I+  I G   I++ +    ++          V+V  G G  
Sbjct: 369 LTPIFSSAREKNGKIRSEDIVAQIKGAAVIQQADMRPLLKF--HHA----VVVFMGAGD- 421

Query: 471 TVHIVTNGEKKMSV 484
               +   EK    
Sbjct: 422 ----IQKYEKAYED 431


>gi|258647731|ref|ZP_05735200.1| UDP-N-acetylmuramate--alanine ligase [Prevotella tannerae ATCC
           51259]
 gi|260852574|gb|EEX72443.1| UDP-N-acetylmuramate--alanine ligase [Prevotella tannerae ATCC
           51259]
          Length = 460

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 129/388 (33%), Gaps = 45/388 (11%)

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V    + L     ++ G      L V GT GK++  +    +   S      +G  + + 
Sbjct: 96  VKKRAEVLGYLTRQMKG------LCVAGTHGKTTTTAMAAHLLHES-----HVGCNAFLG 144

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
             A++               +YL       V +EA       H    ++  A   T+   
Sbjct: 145 GIAKNYAT------------NYLLDNDSDFVVIEADEFDRSFH---HLQPYASVITSTDP 189

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D + T++AY  +    +  L+  +   I+     +     K A   G R    G   
Sbjct: 190 DHLDIYGTKEAYLESFTH-YTSLIRPDGALIV-----HKNLKFKEAPPTGTRRFDYGRDA 243

Query: 275 KFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              H + +     +    +    G   +    +P    + N + A  L    G     + 
Sbjct: 244 GDFHAENIRIGGGRVCFDLISPLGNISEIELGVPVSINIENGIAAIALAQIAGATPDEIR 303

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGG 392
           E ++    V  RF+F    S    +  DYAH    +   + ++R +  GR I  +F    
Sbjct: 304 EGMKTFQGVDRRFDF-KMKSDKVVLLSDYAHHPAEVRQSILSVREVFDGRRITGIFQPHL 362

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRI 446
                        +L L D  I+ D  P  E P +      I   +   +   +      
Sbjct: 363 YTRTRDFYREFAESLSLLDEVILLDIYPARELPIEGVSSKLIYDHLRADMKKHLCD---K 419

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            A+   ++   + DV++V G G     +
Sbjct: 420 SALLPLLKQ-EETDVVMVLGAGDVDAMV 446


>gi|325696366|gb|EGD38257.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK160]
          Length = 444

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   Y +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDYEIIAGNAFRPDNNVEIAYADANGIGYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSVNAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|254232315|ref|ZP_04925642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis C]
 gi|124601374|gb|EAY60384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis C]
          Length = 514

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 93/336 (27%), Gaps = 28/336 (8%)

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +               +    L          + + A  HG      +      G   N+
Sbjct: 157 LGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNV 216

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    +++     K  L  + +P     ++ ADD     + K       RV     
Sbjct: 217 GTAHLGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNT 275

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
              +     +  I                         QV NAL AA + +  G     V
Sbjct: 276 GDVWAGPVSLERIGQAALYAACPRCPSRGPDSGSAATHQVTNALCAAAVALECGASVEQV 335

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-----IV 386
              L     V      V T   G  +  D Y    +S+   L+ +  I            
Sbjct: 336 AAALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWA 395

Query: 387 VFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           V G   +  +       +I      LD++ + +V     RS         ++ G  G  E
Sbjct: 396 VLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGE 452

Query: 442 KGNRIEAIRTAIEMLN-------------KQDVLVV 464
                 A RTA+ + +               DV++V
Sbjct: 453 ATADHGADRTAVNVADGDAALALLRAELRPGDVVLV 488



 Score = 44.2 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 3  LQDLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVG 51
          + +L      E++      I P+    R++   V  DSR I  G +F+A+ G
Sbjct: 1  MIELTVAQIAEIVGGAVADISPLDAAHRRVTGTVEFDSRAIGPGGLFLALPG 52


>gi|3122406|sp|O07669|MURD_ENTHR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2222673|emb|CAA74234.1| murD [Enterococcus hirae]
          Length = 460

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 111/284 (39%), Gaps = 32/284 (11%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TN+   HIDYH+T++ Y  AK  L + +  K+   + 
Sbjct: 172 MELSSFQLM--GITDFRPHVAVVTNIYEAHIDYHKTRKEYVKAKWHLQQNMTEKDYLILN 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +      +E+ + +      VL    + K       L      + ++ + I+        
Sbjct: 230 WN----QEELRELSKKTKATVLPFATEQKLPKGACSLDGSIYYNQEKIMDIT-------- 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NAL A  +    GI +  +   L   H VP R ++VG   +G + Y D 
Sbjct: 278 ELGVPGSHNVENALAAISVAKLYGISNEAIKNALHHFHGVPHRTQYVG-EFQGRKFYNDS 336

Query: 363 AHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             T+     IL     ++  ++  +V+   G DR      ++  +    A I      N 
Sbjct: 337 KATN-----ILATKMALSGFQLDQLVLIAGGLDRGNSFDELIPALKGIKALITFGETQN- 390

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           R ED  K       GIP      N   A+  A+E+  + D +++
Sbjct: 391 RLEDAGK-----KAGIPVIKTAENAEAAVPIALELSEEGDSILL 429


>gi|331006870|ref|ZP_08330123.1| UDP-N-acetylmuramate-alanine ligase [gamma proteobacterium
           IMCC1989]
 gi|330419321|gb|EGG93734.1| UDP-N-acetylmuramate-alanine ligase [gamma proteobacterium
           IMCC1989]
          Length = 491

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 149/451 (33%), Gaps = 77/451 (17%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI   +    GA+ IV SSA    +          I VV    + L+      +G     
Sbjct: 64  FIGHHLENVIGADVIVNSSAVDEDNPEIVSAREHRIPVVRRA-EMLAELMRYRHG----- 117

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  I   +GL      PT  I                    ++ 
Sbjct: 118 -IAVAGTHGKTTTTSLITSIFAAAGLD-----PTFVIGGLVHSTGSNAKLGTS-QYLIAE 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + +                ++ +    TN+  DH+D ++   +        F  
Sbjct: 171 ADESDASFL---------------HLQPMVSVITNIDADHMDTYEGDFSRLKKTFVEFIH 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV- 295
            LP     ++  DD   +E++    +   +V++ G+  +    + +     K Q    V 
Sbjct: 216 NLPFYGLLVVCGDDPVIQELL---PDISRQVITYGFS-EDNDYQAIAVEQEKTQTRFKVK 271

Query: 296 -----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                EG++ D    +PG   V NAL A  + +   I+   + + L     V  RF+  G
Sbjct: 272 SDHLAEGEEIDIQLNMPGNHNVLNALAAIAIAVDEKIEVQSIQKGLLNFEGVGRRFQIYG 331

Query: 351 TNSRGGRI-------------------YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
               G  +                     DY H    ++  ++ +R      R+++++  
Sbjct: 332 DYPVGNSVGNPVGDSVGNPDESGTAMLVDDYGHHPREVDATIQAVRAGWPEKRLVMIYQP 391

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----------PGF 439
                           L   D+ I+ D     E+P  I       +           P F
Sbjct: 392 HRYSRTRDLYEDFVDVLSKVDVLILLDVYSAGEEP--IIGADGRHLSRSIRNRGKVDPIF 449

Query: 440 IEKGNRIEAI-RTAIEMLNKQDVLVVAGKGH 469
           +E  + + AI +  I      D+L+  G G+
Sbjct: 450 VEGVDGVPAIVKEVIM---PNDILMTQGAGN 477


>gi|257095677|ref|YP_003169318.1| UDP-N-acetylmuramate [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257048201|gb|ACV37389.1| UDP-N-acetylmuramate [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 452

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 127/413 (30%), Gaps = 46/413 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  AIA+G                A +    P L            A R+       +LA
Sbjct: 67  VGNAIARG-----------NPLLEAILEHGLPYL------SGPQWLAERVL--QGRWVLA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           V GT GK++ A+ +  I + +GLS   +  G        A+       SP ++ +A  Y 
Sbjct: 108 VAGTHGKTTTAAMLAWILEHAGLSPGFLIGGVPMNFGVSARLAGKDAESPFFVIEADEYD 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++                       +       NL  DH D      A    +   F  +
Sbjct: 168 TAFCDKRSKFVHY------------RARTAVLNNLEFDHADIFPDLAAI-ETQFHHFVRI 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  +  +  A +A  + V+  A      +            +   +  +     +  + 
Sbjct: 215 LPGNALIVANAAEASLENVL--ARGCWTPIERF---NDADGWRAEGSDSDGSLELLRGDS 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 + L G+    NA+ A       G+  A  L  L +   V  R E  G    G +
Sbjct: 270 VVGTTRWGLAGDHNRSNAVAALLAARHAGVPLARGLAALSRFENVRRRLELRGVAG-GVQ 328

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIV 415
           +Y D+AH   ++   L  +R    G  I+            G    M   +L  AD+   
Sbjct: 329 VYDDFAHHPTAIAATLAGLRRKVGGARILAVLEPRSNTMKLGIMKSMLPASLADADLVFC 388

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +        +   +       + + +    +R   +     D ++V   G
Sbjct: 389 YAADLGW----NVVEALAPLGDKAVVENDLDRLVRRLADTARPGDQVLVMSNG 437


>gi|229032342|ref|ZP_04188315.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271]
 gi|228729122|gb|EEL80125.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271]
          Length = 436

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 109/378 (28%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       FNA   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFSDINDVFNAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              +++  +           G    F   + +    +     + V    +D F     G 
Sbjct: 207 EELQKIQAKVP---VIFYGFGEDNDFQ-ARNIQKRTDGTIFDVFVRNTYYDTFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D   V   L     V  RF       +   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
              ++  R       ++ VF         K       +L  AD   + D   + R    E
Sbjct: 321 NATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I       +
Sbjct: 381 LTIEDLQKRIDVAELITD 398


>gi|322386970|ref|ZP_08060594.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus cristatus
           ATCC 51100]
 gi|321269252|gb|EFX52188.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus cristatus
           ATCC 51100]
          Length = 444

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 105/346 (30%), Gaps = 39/346 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVAS 131
            S + +   +A    N   +   +             G    + +++   G  GK+S   
Sbjct: 60  QSDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGSFMRDFVSLGVAGAHGKTSTTG 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +      +S+ IG  +   S      +                         E   
Sbjct: 120 ILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYER 158

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H +  H            TN+  DH DY  + +  FNA     +++        +Y +D 
Sbjct: 159 HFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFVYGEDE 209

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
             + +     NA         +G       +    +     +S  G++  +F  P  G  
Sbjct: 210 QLRRI---TSNAPIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA    GL    GID  LV EHL+    V  RF     N     I  D+AH    + 
Sbjct: 267 NIMNATAVIGLLYIAGIDLNLVREHLKTFSGVKRRFTEKIVND--TVIIDDFAHHPTEII 324

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             L   R    S  I+ +F                 AL+ AD   +
Sbjct: 325 ATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|152977042|ref|YP_001376559.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189028972|sp|A7GTV6|MURC_BACCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152025794|gb|ABS23564.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cytotoxicus NVH
           391-98]
          Length = 436

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 119/405 (29%), Gaps = 53/405 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+  +A+               + V     FL    S+         +AVTG  GK+S 
Sbjct: 63  VIIAGNAFPDTHEEIMAAKELN-IPVHRYHHFLGNLMSQY------TSVAVTGAHGKTST 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  + Q +  +S+ IG   T             +  Y    LSY             
Sbjct: 116 TGLLAHVMQGANPTSYLIG-DGTGHGVENSKYFAFEACEYRRHFLSYY------------ 162

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  DH DY       F+A   +  ++   +   I   D
Sbjct: 163 --------------PDYAIMTNIDFDHPDYFADINDVFHAFQEMALQV---KKGIIACGD 205

Query: 250 DAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLP 307
           D   +++  +       V+  G+ +      + +    +     + V    ++ F     
Sbjct: 206 DEELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGY 260

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL    LC    ID  +V   L     V  RF       +   I  DYAH   
Sbjct: 261 GNHSVLNALAVIALCHYENIDVEVVKHQLTTFEGVKRRFNEKTVRDQ--VIIDDYAHHPT 318

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSED 424
            +   ++          II +F                 +L  AD   + D   + R   
Sbjct: 319 EINATIEAAHQKYPEREIIAIFQPHTFSRTETFLDEFAESLSKADQVYLCDIFGSARENK 378

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E    ++   I G     +    I       +K  VL+  G G 
Sbjct: 379 GELTIEDLQKRIDGAELITDTTTDILKK----HKNGVLIFMGAGD 419


>gi|291514888|emb|CBK64098.1| UDP-N-acetylmuramate--L-alanine ligase [Alistipes shahii WAL 8301]
          Length = 460

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 124/387 (32%), Gaps = 49/387 (12%)

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--GLSSFQIGPTST 152
           V+   + L   A   Y      ++AV GT GK++ ++ V  + +    G S+F  G +  
Sbjct: 95  VEKRSQMLGHLAEGKY------VMAVAGTHGKTTTSTMVAWLNRALTGGGSAFLGGISKN 148

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                                   L       ++VEA        RL          T+ 
Sbjct: 149 FGG--------------------NLVLGDGGRLAVEADEFDRSFLRLY---PDVAVVTSA 185

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH+D + T +A   A  +   ++ P  S  I         +++           S   
Sbjct: 186 DADHLDIYGTHEAVKEAFSQFVRQIRPGGSLII-----KRGVDIVIDNPGIAVYRYSYDE 240

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAG----LCIAIG- 326
              F             +  +      F+     +PG   + NA+ A         A G 
Sbjct: 241 PCDFYARNVQLLEGGHYRYDLVTPSGAFEGCTLGVPGWVNIENAVAAVASVWCAAKAGGT 300

Query: 327 -IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +D+  +   L     V  RFEF   N+       DYAH    L   L ++R +  GR I
Sbjct: 301 PLDADKLRGALASFSGVKRRFEFY-VNTPKQVYMDDYAHHPRELAATLTSVRKMFPGRRI 359

Query: 386 -VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEIIH-GIPGFIEK 442
             +F                 AL  AD  ++    P  E+P   I +EII   +      
Sbjct: 360 TALFQPHLYTRTRDLHAEFAEALSHADEVVLLPIYPAREEPIPGITSEIIARRVAAPCRI 419

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +R         M    DV++  G G+
Sbjct: 420 VDRDHLADEVAAM--DTDVVISFGAGN 444


>gi|205374471|ref|ZP_03227267.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus coahuilensis m4-4]
          Length = 439

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 125/400 (31%), Gaps = 54/400 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++         P++      KFL  F  +         +AVTG  GK+S    +  +   
Sbjct: 75  EEIERAKELGLPVI---RYHKFLGEFMKKF------TSVAVTGAHGKTSTTGLLAHVISG 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG   T             +  Y    LSY                       
Sbjct: 126 DKPTSYLIG-DGTGKGTEDSQYFVFEACEYRRHFLSY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+  DH DY    +  F+A   +  ++       I   DD + + +  +
Sbjct: 162 ---HPDYAIMTNIDFDHPDYFADVEDVFSAFQEMALQV---NKGIIACGDDEHLQSIQTK 215

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
                      G +  F   + +    N     + V    +  F     G+  V NAL  
Sbjct: 216 VP---VVFYGFGEENDFQ-ARNITVDENGTTFDVFVRNTFYASFTISTYGKHNVLNALGV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC    ID+A+V E L     V  RF      S+   I  DYAH    +   + + R 
Sbjct: 272 IALCHYENIDTAVVQERLRTHKGVKRRFTEKVKGSQ--VIIDDYAHHPTEINATIDSARQ 329

Query: 379 ITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGI 436
               R IV VF                 +L  AD   + D      E+  K+    I  +
Sbjct: 330 KYPNREIVFVFQPHTFTRTQAFLTDFADSLRKADKVYLCDIFGSARENHGKLS---IANL 386

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHE-TVHI 474
              IE  + I A      +L+ +D +V+  G G       
Sbjct: 387 QEKIEGADTITA-EDTSALLHHKDAVVIFMGAGDVQKYQE 425


>gi|123440792|ref|YP_001004783.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087753|emb|CAL10538.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 461

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 119/364 (32%), Gaps = 36/364 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +     +      +     SP ++ +
Sbjct: 101 PGRWVLAIAGTHGKTTTAGMVAWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLVMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P     I+  +D + K+VM  A         VG  G++   K            
Sbjct: 207 LV-RLVPGAGKIIVPDNDNHLKQVM--AMGCWSEQELVGETGRWFARKVAVD---ASVFE 260

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++ K   +  + L GE  ++N L+A      +G+  A     L        R E  G 
Sbjct: 261 VFLDNKLVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPAAACRALGDFINARRRLELRG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LD 408
            + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L 
Sbjct: 320 EAHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGMCRNELAPSLG 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVV 464
            AD   +         P+ I  +++      I+       I T ++M        D ++V
Sbjct: 380 RADEVFLFQ-------PQHISWQVVEVAEACIQPAYWSADIDTLVDMVVKTAQPGDHILV 432

Query: 465 AGKG 468
              G
Sbjct: 433 MSNG 436


>gi|253988592|ref|YP_003039948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780042|emb|CAQ83203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photorhabdus
           asymbiotica]
          Length = 423

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 134/398 (33%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L        ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 53  ADLIVVSPGIALATAELQAAADAGIEIVGDIELF--------CREATTPIIAITGSNGKS 104

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G      G     +                      L  Q      +
Sbjct: 105 TVTSLVGEMAKAAGWQVGVGGNIGLPA--------------------LELLKQSCQLYVL 144

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D + Q    Y  AK+R++ +        I+
Sbjct: 145 ELSSFQLE--TTYSLKAAAATVLNVTEDHMDRYPQGLSQYRAAKLRVYHQ----AKRCIV 198

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D     +         R +SVG       L    A       ++    +       L
Sbjct: 199 NVQD----TLTLPETGMDSRCVSVGVDCGDYQLDSENAFLKVHNQSLLAANE-----IKL 249

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N LVA  L  A+GI     L  L     +  RF+ V  N+    I    A   
Sbjct: 250 TGRHNYVNGLVALALADAVGIPREASLATLTVYPGLNHRFQLVHLNNGVRWINDSKATNV 309

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            S E  L  +     G + ++   G  +     P+   +  D   +     D  R     
Sbjct: 310 GSTEAALNGLNL--EGTLYLLL-GGDGKSADFSPLKPFLCGDKVRLYCFGRDGKR---LA 363

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++R EI              +AIR     L   D++++
Sbjct: 364 QLRPEIA------TLTETMEQAIRDIAPRLVAGDMVLL 395


>gi|323441520|gb|EGA99172.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O46]
          Length = 437

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 124/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVPNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I+ A       I +L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIKGASLINEDSINVLEQFDNAVVLF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
 gi|226722954|sp|B5FB37|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
          Length = 440

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 152/403 (37%), Gaps = 68/403 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L         +  I +V +      LFA  +       ++A+TG++GKS
Sbjct: 69  ADLIVTNPGIALASPQLKPAIDKGIQIVGDIE----LFAWAVN----APVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V     ++ + +G+ +   G                        AL  L  Q      +
Sbjct: 121 TVTDLTGEMAKAAGVKTAVGGNIG-------------------FAALDLL-EQDAELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+F+         I+ 
Sbjct: 161 ELSSFQLE--TTSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDH----AEVCIVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD       +   +    + S G+        +   I    +  +S+   +      L 
Sbjct: 215 RDDK------QTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKDAMSLLAAN---ELGLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N+LVA  L  A+GI+    L+ L   + +  R + V  N  G R   D   T+ 
Sbjct: 266 GKHNIANSLVAIALLDAVGINLDATLDTLRTYNGLTHRCQVVADN-NGIRWVNDSKATNV 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT------DDNPR 421
           +  +   +   +     ++V G G   D        +++  L D+ ++        D   
Sbjct: 325 ASTLAALSGLQLEGKLHLLVGGVGKGADFS------ELSPALHDLNLMMYCFGEDGDQFV 378

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           S DP  +  E +             EA+ T    LNK D++++
Sbjct: 379 SLDPRSLLCETMD------------EAVATLYPTLNKGDMVML 409


>gi|116492454|ref|YP_804189.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus pentosaceus
           ATCC 25745]
 gi|122266082|sp|Q03GC5|MURC_PEDPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116102604|gb|ABJ67747.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 436

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 115/361 (31%), Gaps = 53/361 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT GK+S    +  +      +S+ IG  +             P   +        
Sbjct: 107 IGVAGTHGKTSTTGLLAHVLSGLDKTSYLIGDGTGKG---------IPDARFFVFEADEY 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               + +                         TN+  DH DY++      +A  ++ +++
Sbjct: 158 RRHFIAYH------------------PDYMIMTNVDFDHPDYYKDLADVESAFQQVADQV 199

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                    + +D   +++     N    V   G  +        +       +  +  +
Sbjct: 200 ---HKGIFAWGEDESLRKI-----NTSVPVYYYGTKENDDFQATNISRTTTGSEFDVIHK 251

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F   L GE  V N+L    +     +D  LV + L     V  RF         
Sbjct: 252 GEKLGRFTINLFGEHNVLNSLAVIAVAYFEKVDLDLVQKELLTYQGVKRRFSKEAVADN- 310

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH  + ++  L   R      +I+ VF                 +L LAD  +
Sbjct: 311 -ILIDDYAHHPSEIKATLDAARQEFPDKKIVAVFQPHTYSRTAALMDGFAKSLSLADQVV 369

Query: 415 VTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----AIEMLNKQDVLVV-AGKG 468
           +T+      ED   + ++ +       + GN  + I      AI  L+  D ++V  G G
Sbjct: 370 LTEIFGSAREDAGAVSSQDLA-----DKIGNNTKLIHQDDLSAISDLH--DAVLVFMGAG 422

Query: 469 H 469
            
Sbjct: 423 D 423


>gi|262273815|ref|ZP_06051628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Grimontia hollisae
           CIP 101886]
 gi|262222230|gb|EEY73542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Grimontia hollisae
           CIP 101886]
          Length = 445

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 141/399 (35%), Gaps = 61/399 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L      + +   I +V +   F     +         ++ +TG++GKS
Sbjct: 68  ADLIVASPGIALATPELKVAAEKGIEIVGDIELFARDVEA--------PVIGITGSNGKS 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++   +G++   +G    I   A D                 + + G     +
Sbjct: 120 TVTSLVGEMANAAGIN---VGVGGNIGFAALD-----------------MLANGHDLYVL 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L A  F NL  DH+D ++    Y +AK+R+F++       A+  
Sbjct: 160 ELSSFQLE--TTSSLNLDAAVFLNLSEDHMDRYEGMADYRDAKLRIFDQ----AKLAVWN 213

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FP 305
            DD  +K     A       +S G+      L +           ++ +G+    +    
Sbjct: 214 RDDGQTKSGSGAA-------VSFGFSSGEYTLTEQGGAEW-----LTAKGEPVMAVSEIA 261

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   V N L A  L  A GID     + + +   +P R + V  ++    +    A  
Sbjct: 262 LVGRHNVANCLAAMALADAAGIDRKAQRKAMREYRGLPHRCQQVVEHNGVLWVNDSKATN 321

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S    L     +     ++V G G   D      +        D   VT       D 
Sbjct: 322 PASTLAALD-GLQLAGRLHLLVGGDGKGADFSLLKPV-------LDTLNVTL-YCYGRD- 371

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              R      +   +      +A+  A E  N  D++++
Sbjct: 372 ---RQAFTSLVEKPVVTDTMQQAMDIAAENANPGDMVLL 407


>gi|291457566|ref|ZP_06596956.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium breve DSM
           20213]
 gi|291380619|gb|EFE88137.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium breve DSM
           20213]
          Length = 512

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 122/436 (27%), Gaps = 62/436 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V SSA    +      +   + +V  +     + A  + GK     + V G  GK+
Sbjct: 85  ASTVVYSSAIKPSNPEIVAANEAGLYIVHRS----DILALLMNGK---RAVTVAGAHGKT 137

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +S +  I   +G             S+A    +  P    L    +      V     
Sbjct: 138 TTSSMLAHILVHTGADP----------SYAIGGSIQGPDGTTLDGGHAGQGDVLVAEADE 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S                  TN   DH+D++  +  Y  A               +I 
Sbjct: 188 SDGSFA-------KYHPTIAIITNAEADHLDHYGDEAHYRAA---FVNHAGHATGHVVIC 237

Query: 248 ADDAYSKEVMKRAH-NAGCRVLSVGYQ---------GKFIHLKKVCAIHNKQQVT----- 292
           ADD  +  V +    +     +  G           G                V      
Sbjct: 238 ADDPDALAVFQALPADVKAHTVVYGTTPIEQLPDLGGAAHVWISSEQETAGTGVERLTLH 297

Query: 293 -----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                 S +         +PG     NA  A    + +G+  A   + +        RF+
Sbjct: 298 LPAAVTSADAVAQRVELKVPGIHNARNAAAAITAAVLLGVSPADAAQAVGTFLGAARRFQ 357

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             GT  +   +  DYAH    +  +L    R      + V+F                 A
Sbjct: 358 VHGTVKQ-VTVVDDYAHHPTEIAALLDAARRRYPQSTVRVIFQPHLFSRTKFFAHEFAEA 416

Query: 407 LDLADIAIVTDDNPRSED----PEKIRAEIIHGIPGFIE---------KGNRIEAIRTAI 453
           L  AD  IVT   P  E     PE   A I+    G  +           +   A R   
Sbjct: 417 LAKADDVIVTGIFPAREKQEDFPEITAATIVDAAAGIKDAAAGEWIQPVEDMGLAARMMA 476

Query: 454 EMLNKQDVLVVAGKGH 469
              +  DV+   G G 
Sbjct: 477 MRAHHGDVIFTVGAGD 492


>gi|87123322|ref|ZP_01079173.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. RS9917]
 gi|86169042|gb|EAQ70298.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. RS9917]
          Length = 483

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 133/424 (31%), Gaps = 59/424 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVTGTSGK 126
           +  S++  L   S  I  + P LV    R       S   + L  + P   +AV G+ GK
Sbjct: 69  VAGSASPPLVVVSTAIPESNPELVEARARGLSIWHRSDILAALIAEQPA--IAVAGSHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ ++ +  +   +G       PT+ I            +            S G     
Sbjct: 127 TTTSTVITTLLAAAGED-----PTAVIGGVVPCYGSNGHAGSGRYLVAEADESDGS---- 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                       L   +   G  TNL  DH D++           R            + 
Sbjct: 178 ------------LVKFQAELGVLTNLELDHTDHYSGLDDLVATLQRFASGC----ERLLA 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
             DD     +++    A         +G       V    ++       +G        P
Sbjct: 222 NQDDP----ILRDHFQATAWWSVQRCEGVDFAALPVRLDGDRTVADFYEDGGLVGRITLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + N   A   C   G++ + +   LE+L     RF+F G + +G +I  DYAH 
Sbjct: 278 LPGLHNLSNVTGALAACRLAGVEFSRLQRGLEQLQAPGRRFDFRG-DWQGRQIVDDYAHH 336

Query: 366 SNSLEMILKNIRTIT----------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            + +   L   R +             R+ VVF         +       AL +AD+ ++
Sbjct: 337 PSEVSATLTMARLMVSSGRSPLPRQPQRLTVVFQPHRYSRTQEFLDQFAAALTVADLVLL 396

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVA 465
                  E P  I     H + G +      +A+  A           E     D+++  
Sbjct: 397 APVYSAGEAP--IAEVSSHALAGSMRHLAPEQAVLVADSMDELTVLVQEHSRPDDLVLAM 454

Query: 466 GKGH 469
           G G 
Sbjct: 455 GAGD 458


>gi|315223120|ref|ZP_07864988.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus anginosus
           F0211]
 gi|315187809|gb|EFU21556.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus anginosus
           F0211]
          Length = 443

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 108/348 (31%), Gaps = 46/348 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +A+   +      ++   +      +FL  F            + V G  GK+S  
Sbjct: 65  VIAGNAFRPDNNIEIAYADANGITYKRYHEFLGTFMRDFV------SMGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S                K  ++ + +   H      
Sbjct: 119 GMLAHVLSNITDTSYLIGDGTGRGSANA-------------KYFAFEADEYERHFMPYH- 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY  + +  FNA     +++        +Y +D
Sbjct: 165 -------------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQV---SKGLFVYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              + V   A      +   G+ +G       +          +S  G++  +F  P  G
Sbjct: 209 KELRRVTANAP-----IYYYGFKEGNDFIAHDLLRSTTGSSFKVSFHGEELGEFKIPSFG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA    GL    G D  LV EHL     V  RF     N  G  I  D+AH    
Sbjct: 264 RHNIMNATAVIGLLYTAGFDLNLVREHLVTFGGVKRRFTEKMVN--GTTIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   L   R    S  I+ +F                 AL+ AD   +
Sbjct: 322 IIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVYL 369


>gi|327462005|gb|EGF08334.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1057]
          Length = 444

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   Y +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDYEIIAGNAFRPDNNVEIAYADANGIGYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|125718599|ref|YP_001035732.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK36]
 gi|166224742|sp|A3CPS7|MURC_STRSV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125498516|gb|ABN45182.1| UDP-N-acetylmuramate--L-alanine ligase, putative [Streptococcus
           sanguinis SK36]
          Length = 444

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 105/347 (30%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVA 130
           +   + +   +A    N   +   +             G    + +++   G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGSFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +     NA         +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRI---TSNAPIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|75675242|ref|YP_317663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           winogradskyi Nb-255]
 gi|118595669|sp|Q3STT0|MURD_NITWN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|74420112|gb|ABA04311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           winogradskyi Nb-255]
          Length = 466

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 109/316 (34%), Gaps = 30/316 (9%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V++    L      +S        + V+ +   F    A           +A+TGT+
Sbjct: 67  AALVLAPGVPLTHPSPHWSVLAARQAGVEVIGDVELFCRERARHA---PDAPFIAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + V  + + +G      G   T                     LS    +    
Sbjct: 124 GKSTTTALVAHLMREAGYDVQMGGNIGT-------------------AILSLEPPRRGRV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ +D      +    G   NL  DH+D H T + Y   K RL   + P+   A
Sbjct: 165 HVIEMSSYQIDLA--PSLDPTVGILLNLSPDHLDRHGTIEHYAQVKERLIAGVQPQ-GTA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFL 303
           ++  DD +   +  R   AG  V+ V  +    H   V              E  D   +
Sbjct: 222 VVGVDDHWCAAIADRQEQAGRSVVRVSVKRPLAHGVSVEQDRIVLVSGGARSEIADIGGI 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA  A+   +A+G+   ++ + L     +  R E VG  +    +     
Sbjct: 282 GSLRGRHNAQNAACASAGALALGVSRDILQQDLRSFPGLAHRMEQVGRKAHVLFVNDSKG 341

Query: 364 HTSNSLEMILKNIRTI 379
             +++ E  L +   I
Sbjct: 342 TNADATEKALSSFDEI 357


>gi|325571375|ref|ZP_08146875.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325155851|gb|EGC68047.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 452

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 104/279 (37%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +D ++      TN+   HIDYH ++  Y  AK RL ++ +  +   +I
Sbjct: 168 MELSSFQLM--GIDTLRPKIAVITNIYEAHIDYHGSRPEYVLAKWRL-QQRMTADDYLVI 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +    + +  ++        +         L  +  ++ K++  ++ E         +
Sbjct: 225 NWNQPELEALSAKSKAKIIPFSTKEKVAGAYMLDGM--LYYKEEAIMAAE------ELGV 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R ++V T ++        A   
Sbjct: 277 PGAHNIENALAAIAVGKLCNMPNEAIKQALQTFTGVPHRTQYVTTINQVKFFNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L           +V+   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALGGF----DNEKLVLLAGGLDRGNSFDELVPALKGLKAIVVF-------GETKE 385

Query: 427 KIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           K+ +         IE  + +E A+  A  +    D +++
Sbjct: 386 KLASAAQAAGVKTIEMTDNVETAVPVAFSLSAAGDTILL 424


>gi|237753180|ref|ZP_04583660.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375447|gb|EEO25538.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 486

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 122/304 (40%), Gaps = 32/304 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+AVTG+ GK+S+ +++ QI Q S          +T++    D          +     Y
Sbjct: 165 IIAVTGSYGKTSLKNYLSQILQESFKVHSTPRSVNTLTGIIADINQNLSPLTDI-----Y 219

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G       A   G  +  ++ I         +G  HI+Y +  +  +  K  + E 
Sbjct: 220 IVEAG-------ARGSGDIKEIVELIAPQIVVVGKIGEAHIEYFKNIENIYRTKYEILES 272

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   A IY ++        +  N   R+++            + A       ++ V+
Sbjct: 273 --SRLQNAYIYKEN-------IQPTNIQARIINFPQDPSD-----IEATLQGTNFSLKVK 318

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+   F   + G F V N   A  +   +GI +  +++  +KL  +  R   +  N +  
Sbjct: 319 GEKLSFQTRILGAFNVINISAAIAVGSDLGISNERLVKQAQKLEPINHRLSKIVVNDK-- 376

Query: 357 RIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            I +D ++  N L+ +L+ IR  ++ +G+ I+V     +  +     + +    + DIAI
Sbjct: 377 -IILDDSYNGN-LDGMLEAIRLASLHNGKKIIVTPGLVESSKEANIKLAEAIDKVFDIAI 434

Query: 415 VTDD 418
           +T +
Sbjct: 435 ITGE 438


>gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
          Length = 243

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  +  DGH +
Sbjct: 1   MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHDY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       T     PI+ VDNT   L   A     +    ++ 
Sbjct: 53  VKEAMDNGAVASLWKKSYG------TPPKGVPIIFVDNTLFALQQLAQFYRREINVKVIG 106

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRL 162
           +TG++GK++V   ++ I        +  G  + QIG   TI    +D   
Sbjct: 107 ITGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEF 156


>gi|332359142|gb|EGJ36963.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK49]
          Length = 444

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 106/347 (30%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVA 130
           +   + +   +A    N   +   +             G    + +++   G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGSFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              +++  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRQITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|269137740|ref|YP_003294440.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda EIB202]
 gi|267983400|gb|ACY83229.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda EIB202]
 gi|304557798|gb|ADM40462.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda FL6-60]
          Length = 458

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 117/362 (32%), Gaps = 36/362 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMVNWILESCGYEPGFV--IGGVPGNFSVSARLGKSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLRAIQRQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+ A DA  K+VM     +   +      G            +  + ++S
Sbjct: 209 -RLVPGQGRIILPAGDANLKQVMAMGCWSEQELC-----GDEAAWSATRLSTDASRFSVS 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+   +  + L GE  ++N L+A      +G+  A     L        R E  G   
Sbjct: 263 LDGECVGEVEWALVGEHNMHNGLMAIAAARHVGVPPAEACRALGSFINARRRLELRGQAY 322

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLA 410
            G  +Y D+AH   ++   L  +R    G  RI+ V     +  +          AL  A
Sbjct: 323 -GVSVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGVCKNELAPALGRA 381

Query: 411 DIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAG 466
           D   +         P+ I    AE+            +    +   ++     D ++V  
Sbjct: 382 DEVFLYQ-------PQHIPWQVAEVAEACVQPAHWSADLGTLVEMIVKNAQPGDHILVMS 434

Query: 467 KG 468
            G
Sbjct: 435 NG 436


>gi|69244714|ref|ZP_00602978.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257879366|ref|ZP_05659019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257881768|ref|ZP_05661421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257890192|ref|ZP_05669845.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257893520|ref|ZP_05673173.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|258615774|ref|ZP_05713544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecium DO]
 gi|260558808|ref|ZP_05830997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|293553185|ref|ZP_06673822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|293560474|ref|ZP_06676966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|293568300|ref|ZP_06679624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|294621603|ref|ZP_06700768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|314937871|ref|ZP_07845187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|314941362|ref|ZP_07848255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|314950121|ref|ZP_07853407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
 gi|314951338|ref|ZP_07854392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|314992831|ref|ZP_07858232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|314997991|ref|ZP_07862886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|68196305|gb|EAN10734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257813594|gb|EEV42352.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257817426|gb|EEV44754.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257826552|gb|EEV53178.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257829899|gb|EEV56506.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|260075267|gb|EEW63580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|291589012|gb|EFF20836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|291598768|gb|EFF29820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|291602595|gb|EFF32810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|291605622|gb|EFF35064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|313588003|gb|EFR66848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|313592635|gb|EFR71480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|313596555|gb|EFR75400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|313599785|gb|EFR78628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|313642729|gb|EFS07309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|313643562|gb|EFS08142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
          Length = 453

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 110/281 (39%), Gaps = 26/281 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TN+   HIDYH T++ Y  AK  L + +  K+   + 
Sbjct: 168 MELSSFQLM--GITDFRPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +       E+ + A     RVL    +   +        +I+ K++  + +         
Sbjct: 226 WN----QSELQELAQRTKARVLPFSTKEVLEDGVYADDYSIYYKKEKIMEIS------EL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-A 363
            +PG+  V NAL A  +    GI +  + E L   H VP R ++VG   +G + Y D  A
Sbjct: 276 GVPGKHNVENALAAISVAKLYGISNEAIRETLHFFHGVPHRTQYVG-EIQGRKFYNDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + +M L    T      +V+   G DR      ++  +    A + +      +  
Sbjct: 335 TNILATKMALSGFET----SKVVLLAGGLDRGNTFDELIPSLKGIKA-MVVFGQTKEKLM 389

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  K       GI   +   +  +A+  A+E     DV+++
Sbjct: 390 DAGK-----KAGIETIVTADSVEQAVPLALENSTDGDVVLL 425


>gi|33151877|ref|NP_873230.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Haemophilus ducreyi 35000HP]
 gi|33148098|gb|AAP95619.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Haemophilus ducreyi 35000HP]
          Length = 459

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 116/361 (32%), Gaps = 35/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK+S    +  I  ++G+ +  +     ++     +     +  ++ +A 
Sbjct: 106 RWVLAVAGTHGKTSTTGMLAWILDQNGIDTGFL--IGGVAGNFGISARIGSTKFFVIEAD 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+           S                   NL  DH D      A       L 
Sbjct: 164 EYDSAFFDKRSKFVHYS------------PRTLVINNLEFDHADIFADLAAIQRQFHNLV 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P+    +    D  ++ V+K  + +  +     + G+         + +     + 
Sbjct: 212 -RTIPQSGCILSSITDQNTQAVLKMGNYSELQ-----FSGQDQTWFAQPLVADCSAFEVH 265

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G K     + + G   ++NAL+A       G+      + L     V  R E  G  +
Sbjct: 266 YQGNKAGQVQWNVIGAHNMHNALMAIAAAHHSGVSITGACQALASFVNVQRRLEVKGVVN 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLAD 411
               +Y D+AH   ++   +  +R     + I+            G        +L  AD
Sbjct: 326 N-ITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMGVHKHELATSLQDAD 384

Query: 412 IAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              +         P  I    +E++  +    I   +  E +   ++     D +++   
Sbjct: 385 SVFIYQ-------PPTIEWQVSEVLANLAQPAISADDVDELVMRIVQQAKPNDHILIMSN 437

Query: 468 G 468
           G
Sbjct: 438 G 438


>gi|317129523|ref|YP_004095805.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474471|gb|ADU31074.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 368

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 116/359 (32%), Gaps = 31/359 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTG++GKSS  SF+  I              +T  +             +     + +
Sbjct: 11  VGVTGSAGKSSTTSFINAIFNT-----RWKNVLTTKGNMNLPKHTKQAVSQFNRNHKAIV 65

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEE 236
              G+          G   +  + I+   G  TN+G  H      + +    AK  +   
Sbjct: 66  LEMGL----------GRASNHFNYIQPNIGVITNVGTAHYGKLGNSIKETAKAKSAMIRN 115

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISV 295
           + P+    ++  DD  SK +     N    ++ VG   K  +    +          +++
Sbjct: 116 IHPR-GILLLNNDDTNSKLL--DYKNFKGDLIRVGITSKSEYQATNIKYTSYGMIFGVTL 172

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            GK   F  P  G   V NAL A  +   +      +   L        R   +  +   
Sbjct: 173 RGKKVYFFIPAFGMHNVINALFAIAIADRLNFSINEMKLGLRSCKSPSRRVNVIKLSKPK 232

Query: 356 GRIYVDY--AHTSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALD 408
           G + +D        S++  +  +  + + +  +     +   G    +G + +   +A  
Sbjct: 233 GALLIDDTFNANPQSVKAAVDVLAELGNKKKKIAVLGSMLELGDYSKKGHQEVGAYLAKK 292

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
                 +   N        I   I       +   NR + +   I  +LN+  V+++ G
Sbjct: 293 GIKHVFLYGKNASYVKTAAIENGIPE--KNILHTTNRDK-LHYGILRVLNEGCVVLIKG 348


>gi|37528368|ref|NP_931713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36787806|emb|CAE16921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 456

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 119/371 (32%), Gaps = 41/371 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +    + +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYKPGFL--IGGVPGNFETSAQIGESPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+           S                   NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYS------------PRTLIMNNLEFDHGDIFGDLAAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P      +  +D   K+V+         +  VG  G +   K      + Q   
Sbjct: 207 LV-RIVPGSGKICVPDNDVNLKQVLSM--GCWSELELVGETGNWQAKKISTDSRHYQVF- 262

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               GK   +    L GE  + N L+A      +G+  A     L +      R E  G 
Sbjct: 263 --YGGKVVGEVNGSLVGEHNMRNGLIAIAAAHHVGVQPADACCALSEFINARRRLELRGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALD 408
              G  +Y D+AH   ++   L+ +R+   G  RII V          G        AL 
Sbjct: 321 E-NGVTVYDDFAHHPTAILATLEALRSKVGGTARIITVLEPRSNTMKMGVSKNEIAPALG 379

Query: 409 LADIAIVTDDNPRSEDPEKIR---AEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +         P  I+   +EI  H +       +    +   ++   + D ++V
Sbjct: 380 RADEVFLFQ-------PANIKWHVSEIADHCVQPAYWSADIDSLVHMIVDKAQQGDHILV 432

Query: 465 AGKG-----HE 470
              G     HE
Sbjct: 433 MSNGGFGDIHE 443


>gi|194334384|ref|YP_002016244.1| UDP-N-acetylmuramate [Prosthecochloris aestuarii DSM 271]
 gi|194312202|gb|ACF46597.1| UDP-N-acetylmuramate [Prosthecochloris aestuarii DSM 271]
          Length = 481

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 95/283 (33%), Gaps = 22/283 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+  DH D   + +    +  R F  L+P E   +    DA + ++  +A  
Sbjct: 189 RPDIAIINNIEFDHADIFNSIEDIKRS-FRHFVNLVPSEGLLLCNGHDAVALDIASKA-- 245

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
             CRV   G         + + A   +    +        +   PL G   + N L A G
Sbjct: 246 -FCRVERFGLDKSCDWSARNIEANGERTAFELLHNQIPVGNLEIPLFGTHNILNTLAAIG 304

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
                 I   ++ E L        R E +G       +  D+AH   +++  L  +R   
Sbjct: 305 SASQADIQLPVIAEALRHFKGPKRRMEVIGDFPGNITLIDDFAHHPTAIKATLDALRQRF 364

Query: 380 TSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVT--------DDNPRSEDPEKIRA 430
            S RII  F        +           D ADI ++          +N R  D  +I  
Sbjct: 365 PSRRIIACFEPRSNTSTRNTFQEEFSSCFDSADIVVLGKVHRPERYQENER-LDTRQIVE 423

Query: 431 EIIHGIPGFIEKGNRIEA-----IRTAIEMLNKQDVLVVAGKG 468
           +I          G  IE      +R     +N+ DV+++   G
Sbjct: 424 KIAGKGKAAFAAGLNIEQYPLDIVRFLERTINQNDVIILLSNG 466


>gi|91203776|emb|CAJ71429.1| similar to UDP-N-acetylmuramate:L-alanine ligase MurC [Candidatus
           Kuenenia stuttgartiensis]
          Length = 471

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 134/421 (31%), Gaps = 75/421 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----------FASRLYGKHPENILA 119
            ++VSSA   Q+               + +K LSL           A     K     +A
Sbjct: 80  VVIVSSAIEEQN--------------PDIKKALSLNKKITTRSNILAEMFNTKFG---IA 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           V GT+GK++V+S V  +   +G+S   I  G      +              +A      
Sbjct: 123 VGGTNGKTTVSSMVGYVLDHAGMSPTIIVGGCIKNYLTPDFPGNAKVGDSDIVAIEADES 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V +                         TN+ +DH    +  ++      +LFE  
Sbjct: 183 DGSIVNY------------------TPKISIITNMSKDH----KPIESI----SKLFETF 216

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                  +I  DD      +K+        ++ G  +   I+   +         T  + 
Sbjct: 217 SQNTRDLLIINDDCPE---LKKIPFRHKNTITFGLRKSADIYASNIINRPCLS--TFDIN 271

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+ F+    LPG   V NAL A  +   + I    +   L +   V  R + +G    G 
Sbjct: 272 GQSFE--LKLPGIHNVSNALAAISVARHMNIKDNEIAAALYEYKGVQRRMDNIG-EYNGI 328

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA---------- 406
           ++  D+AH    +   ++ ++ I   R+I VF   G             A          
Sbjct: 329 KVIDDFAHNPEKIAAAIRAVK-IGGNRVIAVFQPHGFFPARFMREELINAFIQSLSPEDV 387

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           L + +I  +     +      +  EI            R + I   +  + K D ++V G
Sbjct: 388 LFMPEIYYIGGSVSKEISSADLIREIGKSGRNAFFVEKRGDIIPEIVRTVEKGDCILVMG 447

Query: 467 K 467
            
Sbjct: 448 A 448


>gi|255533212|ref|YP_003093584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
 gi|255346196|gb|ACU05522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
          Length = 447

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 135/390 (34%), Gaps = 39/390 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R         + +TG++GK++       I + +GL+    G               
Sbjct: 96  EFAKRYTK---AKTICITGSNGKTTTTMLTYHILKNAGLNVGLAGNIG------------ 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                      + ++S       +E SS  LD   +   K       N+  DH+D +   
Sbjct: 141 -------HSFAAQVASADFDWYVLEISSFMLDD--MYDFKADIAVLLNITPDHLDRYDYK 191

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y  +KMR+  +    E   I  ADD  + + +K       +      + K      +
Sbjct: 192 LGNYAASKMRI-TQNQTSEDIFIYCADDEETLKALKNVK-VDSKTYPFSIRKKIEKGAYL 249

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            + +    + ++ +         L G+  +YN++ +  +   + I +  + E +     +
Sbjct: 250 ESNNIHININLNDQLTMSITELALQGKHNIYNSMASGIVAKVLDIRNTAIRESMGDFKNI 309

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V   S    I    A   NS    L+++     G  +++   G D+      + 
Sbjct: 310 EHRLEHVARISGVDYINDSKATNVNSTWYALESV-----GTDVILIMGGVDKGNDYDMLK 364

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +  I  +  DN R      I       +   +   +  EA++ A  +  K + +
Sbjct: 365 DMVRQKVKAIVCLGKDNKR------IHEAFEDDVEIIVNTFSAHEAVQVAYHLAKKGNTV 418

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +++     +  +  N E + +     ++E+
Sbjct: 419 LLS-PACASFDLFKNYEDRGNQFKAAVKEL 447


>gi|87301576|ref|ZP_01084416.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
 gi|87283793|gb|EAQ75747.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
          Length = 487

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 133/427 (31%), Gaps = 70/427 (16%)

Query: 69  EAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             +V+S+A   ++    A   +   I    +    L          + +  +AV G+ GK
Sbjct: 76  ALVVISTAVPAENPELMAAREAGLTICHRSDVLAALI---------NAQPSIAVAGSHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ ++ +  +   +        PT+ I       +    S               V    
Sbjct: 127 TTTSTLIATLLAATDQD-----PTAVIGGIVPAFQSNARSGRGR-----------VLVAE 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + S   L + R        G  TNL  DH D++   +A      R            + 
Sbjct: 171 ADESDGSLVKFRSS-----LGLITNLELDHTDHYPDLEALIQTLQRFAAGC----GSLLA 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
            AD      V+++    G        +G       V              G+    F  P
Sbjct: 222 NADCP----VLRQHFQPGAWWSIERSEGVEFAALAVEEHGEGTMADFYENGELVGRFSLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NA  A   C   G+    +   +  L     RF+F G  + G ++  DYAH 
Sbjct: 278 LPGRHNLSNATAALAACRLEGVPFGALATAMRTLRSPGRRFDFRGRWA-GRQVVDDYAHH 336

Query: 366 SNSLEMILKNIRTI----------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            + +E  L   R +             R++ VF         +       AL LAD  ++
Sbjct: 337 PSEVEATLHMARLMVTSGRSPLPEVPQRLVAVFQPHRFSRTAEFMDAFAAALALADTVLL 396

Query: 416 TDDNPRSEDP-------------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                  E P             +++R ++   +   +E+          +      D++
Sbjct: 397 APLYAAGEAPIPGVNSQALANRLQQLRPDLPLRVSATLEQL-----AEQVVRRSQPGDLV 451

Query: 463 VVAGKGH 469
           +V G G 
Sbjct: 452 LVMGAGD 458


>gi|295098592|emb|CBK87682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 438

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 146/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPSLNAAADAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G +    G     +                      L  +G     +
Sbjct: 118 TVTTLVGEMAKAAGKNVGVGGNIGLPALM--------------------LLDKGCELFVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCISFGINMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  +  L+ L     +  RF+    ++    I    A 
Sbjct: 263 MLSGQHNYTNALAALALADAVGLPRSSSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +      +   +  D   +     D     +
Sbjct: 323 NVGSTEAALNGL--HVDGTLYLLL-GGDGKSADFSSLKQYLNGDNVRLYCFGRD---GSE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLIAPRVKPGDMVLL 410


>gi|261206518|ref|ZP_05921218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289565428|ref|ZP_06445877.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|294614711|ref|ZP_06694613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|294618991|ref|ZP_06698486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
 gi|260079228|gb|EEW66919.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289162757|gb|EFD10608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|291592449|gb|EFF24056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|291594652|gb|EFF26034.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
          Length = 453

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 110/281 (39%), Gaps = 26/281 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TN+   HIDYH T++ Y  AK  L + +  K+   + 
Sbjct: 168 MELSSFQLM--GITDFRPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +       E+ + A     RVL    +   +        +I+ K++  + +         
Sbjct: 226 WN----QSELQELAQRTKARVLPFSTKEVLEDGVYADDYSIYYKKEKIMEIS------EL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-A 363
            +PG+  V NAL A  +    GI +  + E L   H VP R ++VG   +G + Y D  A
Sbjct: 276 GVPGKHNVENALAAISVAKLYGISNEAIRETLHFFHGVPHRTQYVG-EIQGRKFYNDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + +M L    T      +V+   G DR      ++  +    A + +      +  
Sbjct: 335 TNILATKMALSGFET----TKVVLLAGGLDRGNTFDELIPSLKGIKA-MVVFGQTKEKLM 389

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  K       GI   +   +  +A+  A+E     DV+++
Sbjct: 390 DAGK-----KAGIETIVTADSVEQAVPLALENSTDGDVVLL 425


>gi|258649001|ref|ZP_05736470.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           tannerae ATCC 51259]
 gi|260850618|gb|EEX70487.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           tannerae ATCC 51259]
          Length = 446

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 120/323 (37%), Gaps = 36/323 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R         + +TG++GK++  S +  I Q++G   + +G    I          
Sbjct: 93  EFAGRYTQ---ARTICITGSNGKTTTTSLIYHILQKAG---YNVGLAGNIG--------- 137

Query: 164 TPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ- 221
                   ++ +   ++G V    +E SS  LD   +   +       N+  DH+D +  
Sbjct: 138 --------RSFALQVAEGDVDWYVIELSSFQLDD--MFRFRADIAVLLNITPDHLDRYDF 187

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             + Y  +KMR+ +   P+++      D+    ++ + A  +     +   +       +
Sbjct: 188 KMENYVASKMRILQNQRPQDTFIYWAGDEHIPTQLQQLAPASRLLAFADAPEAGAAAYAE 247

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              +   Q    ++   +      LPG   + N++ AA    + G+D A +   L     
Sbjct: 248 NGLLTIDQPTPFTMALSE----LSLPGRHNLRNSMAAALAAQSAGVDEATIRAGLADFPG 303

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R E V   +    +    A   ++    L++++T      +V+   G D+      I
Sbjct: 304 VPHRLEKVADVAGVHYVNDSKATNVDACYCALESMQT-----PVVLILGGTDKGNDYNEI 358

Query: 402 MGKIALDLADIAIVTDDNPRSED 424
              +      +  +  DN + +D
Sbjct: 359 APLVREKCRALVFLGADNSKLQD 381


>gi|18311441|ref|NP_563375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens str. 13]
 gi|30316081|sp|Q8XHM4|MURD_CLOPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|18146125|dbj|BAB82165.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           perfringens str. 13]
          Length = 458

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 137/400 (34%), Gaps = 58/400 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +  F     G+    +  VTG+ GK++  + V ++  + G  ++  G   T         
Sbjct: 108 MEEFVRYCKGR----VYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTP-------- 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L   +  +  +    V +E SS  L       +++     TN+  +H+D H+
Sbjct: 156 --------LFSNIEEIKEE--DKVVLELSSFQLMTM---DVEIDVAIVTNITPNHLDMHK 202

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             Q Y +AK  +F+    +    +I  ++  +K + K A     R  S   +G+  + K 
Sbjct: 203 DMQEYIDAKKNVFKYQ-RENDLLVINDENEITKNLDKEAKGKVVRFSSKKTEGEDAYYKD 261

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      + V GK+      +  +    V N L A        +    + +  E  
Sbjct: 262 ---------GKLYVHGKEVCKKDNIIIKGMHNVENYLAAFLAVYDE-VSIESMKKVAETF 311

Query: 340 HVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V  R EF+     G + Y D  A T       LK          +++   G D+    
Sbjct: 312 GGVHHRCEFI-REVDGVKYYNDSIASTPTRTLAGLKAFEK-----PVILLAGGYDKHVPF 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKG-NRIEAIRTA 452
            P+  +    +  I +           EKI+A     E   GI   +  G +  E +  A
Sbjct: 366 EPLAYEGYEKIKAIVLF------GVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIA 419

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             +    D++        +  +  N E +     +I+  I
Sbjct: 420 KSIAESGDII-TLSPACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|325134330|gb|EGC56976.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           M13399]
 gi|325206033|gb|ADZ01486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M04-240196]
          Length = 458

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 117/360 (32%), Gaps = 22/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L V GT GK++ AS +  + + +GL+   +     I    ++  ++   P    +
Sbjct: 103 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGVSARLPQTPRQ 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 158 DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAI-QTQFH 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   +        ++ + +       V   G +  +   +            
Sbjct: 217 YLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEANA----DGSFD 270

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++GK      + L G     NAL        +G+      E L     V  R E  GT
Sbjct: 271 VLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALGAFKNVKRRMEIKGT 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDL 409
            + G  +Y D+AH   +++  ++ +R    G  I+              +      +L  
Sbjct: 331 -ANGITVYDDFAHHPTAIKTTIQGLRQRVGGARILAVLEPRSNTMKLGTMKSALPASLKE 389

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           AD            D     AE +  + G +  G   +A +   ++     D ++V   G
Sbjct: 390 ADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVMSNG 444


>gi|254684768|ref|ZP_05148628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721061|ref|ZP_05182852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. A1055]
 gi|254743600|ref|ZP_05201285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Kruger B]
          Length = 243

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 22/169 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L     K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 1   MNL-----KKFEEVINGEGLH-ESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       +     PI+ VD+T   L   A     +    ++ 
Sbjct: 53  VKEAMDNGAIASLWKKSYG------SPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIG 106

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNR 161
           +TG++GK++V   ++ I        +  G  + QIG   TI    +D  
Sbjct: 107 ITGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTE 155


>gi|332358240|gb|EGJ36068.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK355]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   + +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGIGYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVND--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|323464173|gb|ADX76326.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 437

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 122/360 (33%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     Q       +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPQSEYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY +      NA    F+ +
Sbjct: 162 -------------------------SPDYAIITNIDFDHPDYFKDVDDVINA----FQGM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
                 AII + DD Y K +          V   G+     ++ + +    +  +  + V
Sbjct: 193 AKNVKKAIIAWGDDPYVKNI-----EVDIPVYYYGFDTSMDVYAQNIEVTGSGTEFDVYV 247

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +  F+ P  G+  + NAL    +     ++   + E L     V  RF    T ++
Sbjct: 248 KGEFYGHFVSPQYGDHNILNALAVLTISYLENLNLDNIKEALITFGGVKRRFN--ETFAQ 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R    +  ++ +F                  L+LAD  
Sbjct: 306 NQVLVDDYAHHPREISATIETARKKYPNKEVVAIFQPHTFSRTKAFLQEFADVLNLADQT 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + D      E+  ++   +++  + G             ++E L K D  VL+  G G 
Sbjct: 366 YLCDIFGSIRENQGELSINDLLKLVDGAHLID------ENSVEQLQKHDNAVLLFMGAGD 419


>gi|297590727|ref|ZP_06949365.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|297575613|gb|EFH94329.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437804|gb|ADQ76875.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 124/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 169 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 199

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+ +   I+ + +          + V
Sbjct: 200 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKESDDIYAQNIQITDKGTAFDVYV 254

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 255 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 314

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 315 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 373 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILF 421

Query: 465 AGKGH 469
            G G 
Sbjct: 422 MGAGD 426


>gi|225619140|ref|YP_002720366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225213959|gb|ACN82693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 471

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 143/414 (34%), Gaps = 48/414 (11%)

Query: 82  FSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  I    PI+     R  K +             N +AVTGT GK++  + V  I + 
Sbjct: 91  ISPGIPHTIPIVEEAKRRNIKIIGEIEFAYNFLPNRNYIAVTGTDGKTTTVTLVHDIIK- 149

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              S  +      + +       T      +   LS                       +
Sbjct: 150 ---SYKKARLLGNVGNTFSKEIETIEEDEDVILELSSFQ-----------------LETV 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +       +  N+  DH+D ++  + YFN K  +      K    I+  D+ Y+      
Sbjct: 190 EKFHAHIAAVLNIAEDHLDRYKDIEDYFNTKKNITINQ-NKNDFLILNYDNIYTNIWYNE 248

Query: 260 AH-NAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            + N   ++L+   + KF    + ++   I+ + +   S+  +         G+  + N 
Sbjct: 249 LNGNCKMKLLTFSLKSKFATIYYNEEDEYIYYENEKLFSIANRKV------IGKHNIANI 302

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +C+   I    + + +     +  R E V T   G +   D   T  S+  ++  
Sbjct: 303 LAAVLICLKDDIPVEYIEKAVNNFKGIEHRVELVAT-INGVKYVNDSKAT--SMNSVMSA 359

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +++      I++   G +++     +   I   +  + ++       E  E   +E++H 
Sbjct: 360 LKSFDK--DIILIMGGRNKNIDFTHLNNIINARVKKLILI------GEAAEA-LSEMLH- 409

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
               I   +  +A   A  +    D ++++  G  +  +  N E++      ++
Sbjct: 410 FENKIIVRDLTDAFNYASAISINGDTVLLS-PGCTSFDMFKNYEERGKYFKSLV 462


>gi|86140625|ref|ZP_01059184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832567|gb|EAQ51016.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 132/365 (36%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++    +  + +++GL S   G               
Sbjct: 94  EFAARYTK---ATLVGITGSNGKTTTTMLMAHLLKQAGLKSVAAGNIG------------ 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                    AL           ++E SS  LD   +          TN+  DH+D ++  
Sbjct: 139 --DSFAKWVAL-----DDQDFYALEISSFQLD--GIVDFAPHIAILTNITPDHLDRYEYK 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHL 279
            + Y  +K R+ E    K+       D   +  + K    + C   S+  Q   G +   
Sbjct: 190 FENYIKSKFRIAENQTEKDYLIYDADDPVITDWLAKHPVRSQCIPFSISKQLEKGAYYAQ 249

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +++  + +   +T+S +         + G     NA+ AA     + I  A + E LE  
Sbjct: 250 EEINILIDDTTMTMSTKN------LTIKGAHNTKNAMAAATAARLLSIRKATIRESLEGF 303

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E V   +    I    A   N        + ++++  + +V   G D+     
Sbjct: 304 QGVEHRLEQVLKINHVSYINDSKATNVN---ATFYALDSMSAPTVWIV--GGVDKGNDYT 358

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +   +   +  I  +  DN       K+       +   IE  +  EA++ A ++ +K 
Sbjct: 359 DLFPLVNEKVKGIICLGVDN------AKLLNTFSGMVETIIETQSITEAVKIAYKLSDKG 412

Query: 460 DVLVV 464
           D +++
Sbjct: 413 DNVLL 417


>gi|253732390|ref|ZP_04866555.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|297207546|ref|ZP_06923982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300911629|ref|ZP_07129073.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|253723912|gb|EES92641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|296887882|gb|EFH26779.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300887050|gb|EFK82251.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 123/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 169 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 199

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 200 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 254

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 255 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 314

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 315 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 373 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLF 421

Query: 465 AGKGH 469
            G G 
Sbjct: 422 MGAGD 426


>gi|240141485|ref|YP_002965965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens AM1]
 gi|240011462|gb|ACS42688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens AM1]
          Length = 455

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/318 (20%), Positives = 104/318 (32%), Gaps = 35/318 (11%)

Query: 67  GAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           G  A+V++    L      ++  +     I V+ +   F    A+          +A+TG
Sbjct: 65  GFSALVLAPGVPLTHPEPHWTVGLARQAGIPVIGDIEIFCRERAALA---PNAPFVAITG 121

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  +    + + +G      G   T                     LS       
Sbjct: 122 TNGKSTTTALTAHLLRHAGRDVQMGGNIGT-------------------AILSLEPPAAT 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               VE SS  +D      +K   G   NL  DH+D H T + Y   K RL         
Sbjct: 163 CVHVVELSSFQIDL--TPSLKPGVGILLNLTPDHLDRHGTMENYAAIKERLVAG----AD 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD Y   + +R      R+   G+                    +     +   
Sbjct: 217 LAVIGVDDPYCAAIAERRTGERIRLHVEGHGDAAGDYVGANGTVRGPDGAVIA---EVTG 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           +  L G+  + NA  A    I +G+ SA +   L+    +  R E +        +    
Sbjct: 274 IQALLGDHNLQNAAAAVAAAIRLGLTSAEIAAGLKSFPGLAHRMEPLRRIGPTLFVNDSK 333

Query: 363 AHTSNSLEMILKNIRTIT 380
           A  ++S E  L   R I 
Sbjct: 334 ATNADSTEKALLAFRDIH 351


>gi|262199168|ref|YP_003270377.1| cytoplasmic peptidoglycan synthetase domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262082515|gb|ACY18484.1| cytoplasmic peptidoglycan synthetase domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 631

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 107/300 (35%), Gaps = 36/300 (12%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      T++  DH+D   + +       R F  LLP++   ++ AD   +  + K    
Sbjct: 177 RPHTAILTSVELDHVDIFSSMEDVRET-FRKFVALLPEDGRLLVAADSDEAMAIAKSHAR 235

Query: 263 AGCRVLSVGYQGK------------------------FIHLKKVCAIHNKQQVTISVEGK 298
                 +V                             ++        + +    +  EG+
Sbjct: 236 CALETYAVERDSGNHGNNHGGNHGNNHGGDESEPAVTWLARNLAYTRNGRCSFELRHEGE 295

Query: 299 DFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            FD +   L G   V N + A  +  ++GI  +++ + +     V  R E VG  ++G  
Sbjct: 296 LFDSYETLLTGVHNVGNIVAAIAVAHSLGIAPSVIRDSIAAFAGVARRQEIVGV-AQGVY 354

Query: 358 IYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV 415
           +  DYAH   ++   L+   R  T  RI+ VF       + K      + AL  AD  +V
Sbjct: 355 VIDDYAHHPTAVTETLRGLRRRFTERRIMAVFEPRSATSRRKTFQREYLSALAHADSVVV 414

Query: 416 TD-DNPRS------EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               NP S       DPE +  ++  G        N  + +R   E     DV+VV   G
Sbjct: 415 GRLYNPDSIPPEDRFDPEALALKLHSGRTPASYIDNVDDIVRHLSEQARPGDVVVVFSSG 474


>gi|290961154|ref|YP_003492336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptomyces
           scabiei 87.22]
 gi|260650680|emb|CBG73796.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Streptomyces scabiei 87.22]
          Length = 473

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 137/402 (34%), Gaps = 46/402 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I   +GL +  +G               
Sbjct: 100 ELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILTAAGLRTAAVGNIGV----------- 148

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                    +L  +      +  +         H    ++  + +  NL  DH+D+H + 
Sbjct: 149 ---------SLLDVVLGDEPYDVLAVELSSYQLHWAPSLRAHSAAVLNLAPDHLDWHGSM 199

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKV 282
           +AY   K R++E         +   D   ++++++ A    GCR +             V
Sbjct: 200 EAYAADKGRVYEGNRVACVYNVDATDKPSTEDLVREADVEEGCRAVGFTLGTPGPSQLGV 259

Query: 283 CAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                  +  +    K+   L        P    + NAL AA L  A G+ +A V + L 
Sbjct: 260 VDGILVDRAFVENRQKNAQELAEVADVNPPAPHNIANALAAAALARAYGVPAAAVRDGLR 319

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                  R          G  Y+D +  +N+         ++ +   IV    G  +   
Sbjct: 320 AFTPDAHR--IAHVADVDGVAYIDDSKATNT----HAAQASLAAYESIVWIAGGLAKGAT 373

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIE------AIR 450
              ++   A  L    ++  D         IR  +    P   +   +R +      A+R
Sbjct: 374 FDELVAGAAGRLRGAVLIGADR------ALIREALARHAPEVPVVDLDRTDTGAMPAAVR 427

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            A  +    D +++A     ++ +  N  K+     + +RE+
Sbjct: 428 EARTLARAGDTVLLA-PACASMDMFVNYNKRGDAFAEAVREL 468


>gi|157363500|ref|YP_001470267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
 gi|167017289|sp|A8F4W9|MURD_THELT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157314104|gb|ABV33203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
          Length = 430

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 146/385 (37%), Gaps = 53/385 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++AVTG++GK++    +  + Q+ GL S+  G   T +                   
Sbjct: 97  PNFVIAVTGSNGKTTSCKLLSFVFQKLGLDSYACGNIGTPA------------------- 137

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + +      ++ +E SS  L       + +  G   N+  +H+D+H + + Y  +K++L
Sbjct: 138 -ADVLGFKTKYLVLEISSFQLFWS--KMLHIDIGVVLNIQPNHLDWHPSLEHYAKSKLKL 194

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L      I    D    + +    N                  K+  + +     I
Sbjct: 195 ----LEFSKTGIYNCSDQNIMKFISEKSNLC-----------AFDPLKIRKVDDG----I 235

Query: 294 SVEGKDFDFLFPLPGEF-QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EGK + F          + N      +   +  D   VLE LE    +  R EFV  +
Sbjct: 236 VYEGKYYTFKNDFLKTHQNLQNLSAILKIFSVMNFDLKQVLEILEDFKPLKHRMEFV--D 293

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              G ++++ +  ++S    +  +    S  +I++   G  +++    ++ +I    A  
Sbjct: 294 EINGVVFLNDSKATSS-AATISALENFNSRNVILLL-AGRGKNEDYADLIAQIK-RKAKH 350

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            IV       E  E +R E+      +    N   A+  A E+  K DV++++  G  + 
Sbjct: 351 VIV-----FGEMVELLRDELKLSDIPYTISENMQNAVLKAFEISEKGDVVLLSPAGA-SF 404

Query: 473 HIVTNGEKKMSVDCDIIREILGLIL 497
            +  N +++     ++++ + G +L
Sbjct: 405 DMYRNYQERGEHFINMVKLLRGKLL 429


>gi|327470404|gb|EGF15860.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK330]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   Y +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDYEIIAGNAFRPDNNVEIAYADANGIGYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSVNAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFADALNQADSVYL 370


>gi|325132242|gb|EGC54936.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M6190]
 gi|325138166|gb|EGC60737.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           ES14902]
          Length = 458

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 119/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL         G+      E L     
Sbjct: 265 A----DGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHAGVGIQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRIGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                ++L  AD            D     AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPVSLKEADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|324991288|gb|EGC23221.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK353]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 105/347 (30%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVA 130
           +   Y +   +A    N   +   +             G    + +++   G  GK+S  
Sbjct: 59  IQPDYEIIAGNAFRPDNNVEIAYADANGIGYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|189347972|ref|YP_001944501.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlorobium
           limicola DSM 245]
 gi|226711892|sp|B3EIL0|MURD_CHLL2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189342119|gb|ACD91522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium limicola
           DSM 245]
          Length = 465

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 137/388 (35%), Gaps = 43/388 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS         I  +TGT GK++ ++ + +I +  G+ +              D R  
Sbjct: 97  EAASWFCK---ARIAGITGTDGKTTTSTLLHRIAEADGMKN--------------DYRAF 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQT 222
           +   I +  +   L         VE SS+ L+    +  +      TN+  DH+D Y+  
Sbjct: 140 SVGNIGVPFSSLVLDMAPADLAVVELSSYQLE--GCETFRPDVSVITNITPDHLDRYNGD 197

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---------Q 273
            Q Y  AK R++      ++    + D     +          R++  G          +
Sbjct: 198 MQLYAAAKFRIYASQRASDTLVYNFDDPLLRAQFSGNGRGFPFRIVPFGIGNDVPGSGSE 257

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             F + + +      + ++    G+DF       G   +YNAL A     A+GI+ ++  
Sbjct: 258 EAFFYDEGMIRHLTAKGISEVFSGEDF-LKSSFRGRHNIYNALAALAAAAALGIEESVAR 316

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + +     V  R EFV +      I    A   N+L   L  +        IV+   G D
Sbjct: 317 KAISGFSGVEHRQEFVCSLDGVEWINDSKATNVNALLQALDAVP-----GSIVLIAGGRD 371

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +      +   +   +  +  +       E  EKI  ++  GI          +A+  A 
Sbjct: 372 KGNDYTVLFDVVRRKVVTVIAI------GEAREKIL-QVFEGITRTAGADTLDDAVALAR 424

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           E   K   ++ +  G  +  +  N E++
Sbjct: 425 ESAEKGQTVLFS-PGCASFDMFENFEER 451


>gi|323439606|gb|EGA97326.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O11]
          Length = 437

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 124/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I+ A       I +L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIKGASLINEDSINVLEQFDNAVVLF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|295397238|ref|ZP_06807336.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
 gi|294974519|gb|EFG50248.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
          Length = 447

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 127/363 (34%), Gaps = 53/363 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  + +    ++F IG  +                          
Sbjct: 107 VAITGSHGKTSTTGLMAHVMRGLHPTNFLIGDGTGAG----------------------- 143

Query: 178 SSQGVTHVSVEASS---HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +   +  +EA     H L  H           FTN+  DH DY++     F A     
Sbjct: 144 -QEDAEYFVLEADEYRKHFLAYH------PDYAIFTNIDFDHPDYYENIDQVFAANTTFA 196

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVT 292
            ++  K    I Y  DAY ++    A  +   V   G +G   H     V    +     
Sbjct: 197 HQVKKK---VIAYGGDAYLRQF---ADQSDIDVWYYGLEGGDNHIVASNVDLATDGSHFD 250

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + V G+ +  F  P  GE  V NAL   G C      +  V E L     V  RF     
Sbjct: 251 VHVMGEFYGHFDIPTFGEHNVMNALSVIGFCYLENFPADRVAEELRTFGGVKRRFSEKKI 310

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLA 410
                 +  DYAH  + ++  +   R     + IV VF                 ALDL+
Sbjct: 311 GDM--TLIDDYAHHPSEIKATINAARQKYPNKKIVSVFQPHTFSRTIALMDEFAGALDLS 368

Query: 411 DIAIVTDD--NPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
           D   + +   + R +D +++  +++ + +   ++       +     +L+  D +++  G
Sbjct: 369 DDVYLCEIFASAREKDNKQVSVSDLANKVTKPVQVLP----LENVSPLLDYDDAVMIFMG 424

Query: 467 KGH 469
            G 
Sbjct: 425 AGD 427


>gi|257439004|ref|ZP_05614759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198589|gb|EEU96873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 467

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 115/356 (32%), Gaps = 29/356 (8%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIG----------------A 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L  +  + V    VE SS  L               TN+  +H+D+H+  Q Y +
Sbjct: 157 ALLPMLPEVRPEDVAV--VELSSFQLISMHQS---PKIAVVTNVTPNHLDHHKDMQEYID 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +     P     + Y ++  S+ + K           +        L+K   +   
Sbjct: 212 AKRNILLYQNPPCRAVLGY-ENEISRSMQKDCKGRQVWFTRLHDTDNGAFLRKEDNMLCM 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +            L G   + N L AA       +    + +       V  R E 
Sbjct: 271 AEDGVVTPFLA-QKDIKLRGLHNIENLLAAAAAVWGE-VPVEAIQKVGSTFTGVEHRIEP 328

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T    G +Y + +    S    +  +R+      +++   G D+     P+  +I   
Sbjct: 329 VRT--LDGVLYYNDS-IGTSPTRTIAGLRSFDQK--VILIAGGYDKHIPYEPLAPEIVAH 383

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + D+ ++    PR E   +                N   A+  A       D++++
Sbjct: 384 VKDLVLMGATGPRIEKALREDPGFNEAALPIQHADNMQHAVELARAAAKPGDIIIL 439


>gi|229118178|ref|ZP_04247537.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3]
 gi|228665401|gb|EEL20884.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3]
          Length = 436

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 113/379 (29%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFADINDVFGAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++  +       V+  G+ +      + +    +     + V    +D F     G
Sbjct: 207 EELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 NHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   ++  R       ++ VF         K       +L  AD   + D   + R +  
Sbjct: 320 INATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSAREKKG 379

Query: 426 EKIRAEIIHGIPGFIEKGN 444
           +    ++   I G     +
Sbjct: 380 DLTIEDLQKRIDGAELITD 398


>gi|225023408|ref|ZP_03712600.1| hypothetical protein EIKCOROL_00266 [Eikenella corrodens ATCC
           23834]
 gi|224943886|gb|EEG25095.1| hypothetical protein EIKCOROL_00266 [Eikenella corrodens ATCC
           23834]
          Length = 459

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 114/359 (31%), Gaps = 20/359 (5%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L V GT GK++ AS +  + + +GL+   +     I    Q+  ++   P     
Sbjct: 103 HGRWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGIPQNFGISARLPQAPKA 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 158 DPASRSPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPNLAAI-QTQFH 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P +   +    +   + V+  A      V + G    +   +      N     
Sbjct: 217 HLVRTIPGQGLIVCNGREESLQTVL--AQGCWTPVENFGGAEGWQAGE---PDGNGAFDV 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +          + L GE    NAL         G+   +  E L +   V  R E  G  
Sbjct: 272 LHHGQTVGRIGWQLLGEHNRLNALAVIAAARHAGVSIQVACEALSQFQNVKRRMEVKGC- 330

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLA 410
            RG  +Y D+AH   ++   +  +R    G  I+              +   +  +L  A
Sbjct: 331 VRGITVYDDFAHHPTAIATTVAGLRQKVGGARIIAVLEPRSNTMKLGSMKAALPESLAEA 390

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           D                + A +   +   +  GN  +A +++ +      D ++V   G
Sbjct: 391 DQVFCYG----GGVEWDVAAALAP-LGSKLHTGNDFDAFVQSILSNAKSGDHILVMSNG 444


>gi|257454325|ref|ZP_05619588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
 gi|257448228|gb|EEV23208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
          Length = 486

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 131/373 (35%), Gaps = 48/373 (12%)

Query: 68  AEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A A  I++S                 I +V + + F       +  +    I+A+TG++ 
Sbjct: 88  AVADRIIISPGIDPYLPVFDGARAKKIAIVSDIQLF-----HEVAKQRDIPIIAITGSNA 142

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + V ++ + +G      G   T +                      L  + +   
Sbjct: 143 KSTVTTLVGEMVKNAGFKVGVGGNLGTPA--------------------LDLLLEPIQMA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L       +     +  N+  DH+D H     Y  AK R+F+ +       +
Sbjct: 183 VLELSSFQL--QTTTNLAAKVATVLNMSPDHLDRHGNMLGYHQAKHRIFQGV----QSIV 236

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D  S+ ++          +S G     ++   +    +  ++ ++   +       
Sbjct: 237 VNREDLLSRPLVAD----DMPTISFGSNAPDMNQYGLIKDSDG-KIWLARGRERLLNEKD 291

Query: 306 LPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +P +    + NAL A  +    G+    +L  L+    +P R EF+ T  +    + D  
Sbjct: 292 VPIKGEHNLMNALSALAIGELAGLPLESMLTTLKNFVGLPHRCEFITTTHQ-LDCFDDSK 350

Query: 364 HTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            T+  +++  IL   +        +    GG         + K  +D A +         
Sbjct: 351 GTNIGSTIAAILGLGKVYAPKGKKLAVILGGQGKGQNFAELAKPLMDYAQVVYFI----- 405

Query: 422 SEDPEKIRAEIIH 434
            ED +KI A++  
Sbjct: 406 GEDADKIAADLAS 418


>gi|109896574|ref|YP_659829.1| UDP-N-acetylmuramate [Pseudoalteromonas atlantica T6c]
 gi|109698855|gb|ABG38775.1| UDP-N-acetylmuramate [Pseudoalteromonas atlantica T6c]
          Length = 448

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 138/418 (33%), Gaps = 60/418 (14%)

Query: 60  IPQAIAQG--AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A+++G  A   V++             ++ P  +++N  K                +
Sbjct: 67  IGNALSRGNLAVEYVLNRGIP--------YTSGPQWLLENVLK-------------DRWV 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV+GT GK+S +S +  I + +G+S   +     I    Q+  ++           + L
Sbjct: 106 LAVSGTHGKTSTSSMLAWILESAGMSPGFL-----IGGIPQNFDIS-----------ARL 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  +  +         R   +  +       N+  DH D   +          L  
Sbjct: 150 GETPFFVIEADEYDSAFFDKRSKFVHYRPRTLVINNIEFDHADIFDSIADIQKQFHHLI- 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            ++P     I    D    +V+ +   +  + +   ++ +              +  +  
Sbjct: 209 RMIPGNGLVIAPKTDNQITQVLDKGCWSPVQFVGSDWKAENGSAD-------GGEFDVIY 261

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +GK F    + L G   V NA++A       G+   + +E L        R E +GT   
Sbjct: 262 KGKSFGRVKWSLLGLHNVQNAMMAIIAARHAGVLPEVAIEALGSFVNAKRRMEILGT-VN 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
           G  +Y D+AH   ++   L+ +R       I+                  +A     AD 
Sbjct: 321 GITVYDDFAHHPTAIATTLEGLRAKVGDARILAVLEPRSNTMKMGVHKQTLAKSWSAADQ 380

Query: 413 AIVTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + + +    S D    ++E+   +   +         ++ +  +   D +++   G
Sbjct: 381 VFIYEPSNLSWSMDALLAQSEVTASLHNDLNILE-----KSILSYVQPGDHVLIMSNG 433


>gi|90408125|ref|ZP_01216294.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Psychromonas sp. CNPT3]
 gi|90310737|gb|EAS38853.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Psychromonas sp. CNPT3]
          Length = 446

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 115/359 (32%), Gaps = 33/359 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK+S AS +  I + + +    +     I    ++  L+           
Sbjct: 103 RWVLAVAGTHGKTSTASMLAWILEYANMKPGFL-----IGGVPENFGLS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D  +   A       
Sbjct: 147 ARLGETPFFVIEADEYDCAFFDKRSKFVHYHPRTLVLNNLEFDHADIFENLDAIKKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +           D+A        A         V Y G+   + K+    +K  V 
Sbjct: 207 LIRTVPSSGRIFFPNQDEAL------MAVKHMGCWSEVEYLGENWSINKIQEDGSKFDVL 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ +  +    +PL G+  + NAL A      +G+   +  + L     +  R E  G  
Sbjct: 261 LNAK-IEGRVDWPLIGDHNINNALGAIAAARHVGVTPEISTQALASFKSIKRRMEVKGVV 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLA 410
           +    +Y D+AH   ++   L  +R       I+            G +      AL  A
Sbjct: 320 NH-VTVYDDFAHHPTAINTTLLGLRAKVGEARIIAVVEPRSNTMKLGIQKEALVNALTSA 378

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
           D     +    S D +   A++       ++    I+ +     E+    D +++   G
Sbjct: 379 DKIYFYE----SADMQWSIADLFMEQGKKVDISTEIDTLADKLAEIARPGDHILIMSNG 433


>gi|322387438|ref|ZP_08061048.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus infantis ATCC
           700779]
 gi|321141967|gb|EFX37462.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus infantis ATCC
           700779]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 99/344 (28%), Gaps = 39/344 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVASFV 133
              +   +A    N   +   +             G    + +++   G  GK+S    +
Sbjct: 62  DLEIIAGNAFRPDNNVEIAYADKNGLSYKRYHEFLGSFMRDFISMGVAGAHGKTSTTGML 121

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +      +S+ IG  +   S      +                         E   H 
Sbjct: 122 SHVLSHITDTSYLIGDGTGRGSENAKYFVFESD---------------------EYERHF 160

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +  H            TN+  DH DY  + +  FNA     +++        +Y +DA  
Sbjct: 161 MPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFVYGEDA-- 209

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQV 312
            E+ K   NA                  +         T+   G++   F  P  G   +
Sbjct: 210 -ELRKITANAPIYYYGFEADNNDFVASDLLRSTTGSTFTVHFRGQELGQFHIPTFGRHNI 268

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA    GL    G D  LV EHL     V  RF     N     I  D+AH    +   
Sbjct: 269 MNATAVIGLLYTAGFDLNLVREHLNTFGGVKRRFTEKIVND--TVIIDDFAHHPTEIIAT 326

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           L   R    S  I+ +F                 AL+ AD   +
Sbjct: 327 LDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQALNQADAVYL 370


>gi|309379964|emb|CBX21375.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 458

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 122/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGIPENFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +    H  + 
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQA 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 261 GEVNADGSFDVLLDGKKAGRVKWDLMGRHNRMNALAVIAAARHAGVDIRTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                 +L  AD            D +   AE +  + G +  G   +A +   ++    
Sbjct: 380 KAALPASLKEADQVFC---YAGGVDWD--VAEALVPLGGRLHVGKDFDAFVAEIVKNART 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|323350999|ref|ZP_08086656.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           VMC66]
 gi|322122723|gb|EFX94432.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           VMC66]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   + +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|297748892|gb|ADI51438.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-EC]
 gi|297749772|gb|ADI52450.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-LC]
          Length = 833

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 120/366 (32%), Gaps = 47/366 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SS+ S ++       +    VV    + L+  A        +  + VTG+ GK
Sbjct: 94  GAV-VVYSSSISKKNPEFLSAKSRGNRVVHRA-ELLAELA------QDQISIFVTGSHGK 145

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V+S +  I Q +  +         I    Q+                     G  +  
Sbjct: 146 TTVSSLITAILQEAKKNPSFA-----IGGLNQEGINGGS---------------GSEYFV 185

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA         +          TN+  +H+   +  +    A ++ F   L  +     
Sbjct: 186 AEADESDGS---IRCYTPEFSVITNIDDEHLSNFEGDRELLLASLKDFA--LKTQQICWY 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFL 303
             D    +        +  +  + G       L  +       ++  + + +D    D  
Sbjct: 241 NGDCPRLR--------SCLQGHTFGLDSS-CDLHILSYYQEGWRLYFTAKYQDVVYADIE 291

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V NA  A G+ +++GID   +         V  R +   ++        DYA
Sbjct: 292 VQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQRKNSSET-FLFLEDYA 350

Query: 364 HTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  + +   L+ +RT    R I+ ++         +       A   AD  ++T+     
Sbjct: 351 HHPSEISCTLRAVRTAVGQRRILAIYQPHRFSRLRECIDSFPSAFKDADEVLLTEVYSAG 410

Query: 423 EDPEKI 428
           E+ E I
Sbjct: 411 EEAEDI 416


>gi|54310305|ref|YP_131325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum SS9]
 gi|60390455|sp|Q6LMF4|MURD_PHOPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46914746|emb|CAG21523.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Photobacterium profundum SS9]
          Length = 447

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 144/397 (36%), Gaps = 55/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L            I +V +   F  +          + ++A+TG++GKS
Sbjct: 69  ADLIVASPGIALATPELVAAKAAGIEIVGDIELFARVV--------TKPVVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S + ++ + +G++    G                        AL  L ++      +
Sbjct: 121 TVTSLIGEMAKEAGINVGVGGNIG-------------------FAALDMLVNEH-DLYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++L A  + NL  DH+D +   + Y  AKMR+FE        A+  
Sbjct: 161 ELSSFQLE--TTSSLQLKAAVYLNLSEDHMDRYNGLEDYSLAKMRIFEH----AELAVYN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD     +     +   ++ S G+  +   L     +H ++ + +  +         L 
Sbjct: 215 RDD-----LATFPVSFSHQITSFGFDNQDYGL---VTLHGEEFLALDEQPIMKTSDIALV 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N+L A  L  A+ ID   V   L++ + +  R + V  N    +   D   T+ 
Sbjct: 267 GRHNVANSLAALALADAVNIDRQAVCRALQRYNGLAHRCQLV-VNQHDVKWVNDSKATN- 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L   L  ++ +     + +   G  +      +   +A     +     D         
Sbjct: 325 -LASTLAALKGLNLPGKLHLLVGGDGKGADFSELKLVLADLNVQLYCFGRDG-------- 375

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  +   I      +A+  A +   K D++++
Sbjct: 376 --NQFMPLVDAPICIETMAQAMAIAADTAQKGDMILL 410


>gi|325687135|gb|EGD29158.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK72]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   + +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|145641278|ref|ZP_01796858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|145274115|gb|EDK13981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.4-21]
          Length = 437

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 127/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTLEIQTALKAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N     +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---RLTFGENENQAKHTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+     + G R   D   T+    
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLAH-QANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     +++ G G   D      + ++      I           D     A
Sbjct: 328 VAALAGLYIEGKLHLLLGGDGKGADFS---ELAELINQPHIICYC-----FGRD----GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +AI      L   D++++
Sbjct: 376 LLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|54307599|ref|YP_128619.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
 gi|46912022|emb|CAG18817.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
          Length = 452

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 119/364 (32%), Gaps = 36/364 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV GT GK++ AS +  I +  G     +     + +F    R        L +
Sbjct: 101 HDRWVLAVAGTHGKTTTASMLAWILEDCGYQPGFL-VGGVLGNFGISAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLVMNNLEFDHADIFDDLKAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +                 E +++  + GC    + + G   H      + +     
Sbjct: 207 LVRTVPSNGRILA-----PKGVESIQQTLDMGCWS-ELEFTGDDGHWIAKKQVADGSVFD 260

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G       + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VYLDGLMIGTVRWDLVGDHNVNNALMAIAAARHVGVTPDLGCEALATFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
             +G ++Y D+AH   ++E+ L  +R  I   + I+                G I  AL+
Sbjct: 320 EVKGVKVYDDFAHHPTAIELTLGGLRAKIGDEQRILAVLEPRSNTMKLGVHKGDIAPALN 379

Query: 409 LADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +         PE I     EI        +   N  + +   +  +   D ++V
Sbjct: 380 AADCVFIFQ-------PETIPWSVNEIADACSQPAVTDTNLDKLVAEIVAEVKSGDTILV 432

Query: 465 AGKG 468
              G
Sbjct: 433 MSNG 436


>gi|145630236|ref|ZP_01786018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|144984517|gb|EDJ91940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
          Length = 437

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 127/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N     +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---RLTFGENENQAKHTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+     + G R   D   T+    
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLAH-QANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     +++ G G   D      + ++      I           D     A
Sbjct: 328 VAALAGLYIEGKLHLLLGGDGKGADFS---ELAELINQPHIICYC-----FGRD----GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +AI      L   D++++
Sbjct: 376 LLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|146305955|ref|YP_001186420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina ymp]
 gi|145574156|gb|ABP83688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           mendocina ymp]
          Length = 448

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 123/352 (34%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APIVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLADDVELYVLELSSFQLE--TTDQLNAEVATCLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++  DDA S+ ++             G          +   + ++ +   
Sbjct: 207 RG----ARQVVVNRDDALSRPLIAD----QVTCWEFGLGKPDFKRFGLLEENGEKSLAFR 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +P R ++VG  + 
Sbjct: 259 FEALLPVSELKIRGAHNQSNALAALALGHAVGLPMEAMLATLRQFAGLPHRCQWVGERA- 317

Query: 355 GGRIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           G   Y D   T+   +L  I      I     +V+   G  +      +   +A     +
Sbjct: 318 GVNYYDDSKATNVGAALAAIEGLGADIAGK--LVLIAGGDGKGADFSALKAPVARFCRAV 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I A +    P  +      EA++   E+    D +++
Sbjct: 376 VLL------GRDAELIAAALGDAAP-LVRVTTLDEAVQRCSELAEAGDAVLL 420


>gi|289662111|ref|ZP_06483692.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 452

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 145/412 (35%), Gaps = 28/412 (6%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 49  ALAQGYAPSNISPDAIDVVVGNALSRGNPAVEAVLDAGRRYTSGAQWLAEQVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A+D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGCEFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G+        ++ A        +    + 
Sbjct: 214 ARGRLIVNGEDAHLAEVL--AMGCWTPVERFGFDVSLDWSARLIAADGSAFAVLHRGVEI 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A V+  L +   V  R E +G N+ G  +Y
Sbjct: 272 GQVQWPLVGRHNVLNGLAALAAAHAVGVDPATVMPALARFQSVKRRLEVIG-NAHGVTVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       +VV                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRAKVGAARVVVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              R E      A II  + G     + ++A+   + E+    D +V    G
Sbjct: 390 --HRPELAWD-AAPIIAQVRGDAHVAHDVDALLQTLGEIAQPGDHVVFMSNG 438


>gi|150391164|ref|YP_001321213.1| Mur ligase middle domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951026|gb|ABR49554.1| Mur ligase, middle domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 403

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 107/316 (33%), Gaps = 23/316 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TG++GK++    +  I Q      ++I  +    +F ++ +          +
Sbjct: 41  PTVPTIAITGSAGKTTTKEMLASILQT----KWKIFKSKENKNFQKNTQKHARMIKPWHQ 96

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKM 231
            +      G  +      SH         I+      TN+G  H      + +    AK 
Sbjct: 97  GVVLEFGMGEANTGKMHCSH---------IQPNIAVITNVGSAHYGVFGNSIKLTAKAKS 147

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L + + P E    I  DD  SK +  +        +S+  +  +  +  +  +      
Sbjct: 148 ELIKYMKP-EGILYINNDDNNSKLLQIKGFKGEIFTVSIKNKSDYQAV-NIKYVDQGMTF 205

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++ +  DF  P  G   V NAL A G+        + +   L+   V   R      
Sbjct: 206 QVKLDDQLEDFFIPTFGYHNVINALFAIGVSHHQKFSPSEIKVGLKNYEVPVRRLNHYEL 265

Query: 352 NSRGGRIYVD-YAHTSNSLEMILKNIRT---ITSGRIIV--VFGCGGDRDQGKRPIMGKI 405
              G  I  D Y+    + +  +  +     I    +I+  +   G    +G + +   +
Sbjct: 266 P-NGLVILDDSYSANPEATKAAIDVLVELGKIKKKLVILGSMLELGEYSIEGHKEVGKYL 324

Query: 406 ALDLADIAIVTDDNPR 421
           A +  D  ++     R
Sbjct: 325 AQNKVDKIVIIGKEAR 340


>gi|114564956|ref|YP_752470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336249|gb|ABI73631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
          Length = 440

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 137/397 (34%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S    +         +  I V+ +   F    A +        ++ +TG++GKS
Sbjct: 67  ASQIIISPGVPIDTPEVRAALDMGIEVIGDVELFAREIADK-----KPCVVGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +G S    G   T +                      L  Q      +
Sbjct: 122 TVTTLVYEMLLAAGKSVAIGGNIGTPA--------------------LDLLPQNADFYVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  IA +  N+  DH+D +     Y  AK+RL+    P+    +  
Sbjct: 162 ELSSFQLE--TTHSLNCIAATCLNVSEDHMDRYSDLNTYREAKLRLY----PQSRFVMYN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  +  +     N     +    +G    L      H   ++   ++         L 
Sbjct: 216 RDDELTYPLEPMNQNNFGLGVP---EGDAWGLSDGKIFHGDSEIINLID-------VTLI 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A G+    ++E  +    +  R E +        I    A    
Sbjct: 266 GSHNHANLLAAMALADACGVGKEAMIEVAKSFVGLSHRCELIAVKQGVSYINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+ + +   G + ++   G  +    RP+   ++        +T       D  K
Sbjct: 326 ATVAALEGLNSHL-GDLYLI-AGGDGKGSDFRPLTEPLSN-------ITQLITLGRDGRK 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A++  G    IE     EA+  A E+ +  D++++
Sbjct: 377 I-AKLKAG---TIEVATMAEAVAKAAELASSGDIVLL 409


>gi|299822723|ref|ZP_07054609.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria grayi DSM 20601]
 gi|299816252|gb|EFI83490.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria grayi DSM 20601]
          Length = 440

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 142/416 (34%), Gaps = 54/416 (12%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F  + I +G + I+  +A+               L V    KFL  F            +
Sbjct: 53  FSAENIQKG-QTIIAGNAFPDTHEEIVKAKELG-LTVIRYHKFLGQFIENY------TSI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG+ GK+S    +  + +    +S+ IG  +   +                       
Sbjct: 105 AITGSHGKTSTTGLLSHVLEGIKPTSYLIGDGTGSGT----------------------- 141

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G  + ++EA  +   +H L          TN+  DH DY ++    F+A    F+ + 
Sbjct: 142 -KGAEYFALEACEYQ--RHFLAY-SPTYAIMTNIDWDHPDYFKSVDDVFDA----FQTMG 193

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A+I   D   +++ +   +        G   +FI    +             + K
Sbjct: 194 SQVKKAVIALGDD--EQLRRLDLDIPIVYFGFGENNEFIAKNVIKKTTGTVFDAYHFDQK 251

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P  G+  V NAL    L    G+    V+E L+    V  RF      ++   +
Sbjct: 252 LGTFEIPTYGDHNVMNALSVIALTDYEGLPMKSVIEGLKTFEGVKRRFSISEKGNQ--VL 309

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DYAH  + +   +   R      +++ VF                 +L+LAD   + D
Sbjct: 310 VDDYAHHPSEIRATINAARQKYPDKKVVAVFQPHTFTRTQTFLQGFAESLNLADEVYLCD 369

Query: 418 DN-PRSEDPEKI-RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 E   K+   ++     G   I++ +  E +R        + V++  G G 
Sbjct: 370 IFGSAREKTGKLTIGDLAAKTKGNHIIKEAHTEELLRY------PEAVILFMGAGD 419


>gi|300813921|ref|ZP_07094225.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300511984|gb|EFK39180.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 261

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 90/259 (34%), Gaps = 22/259 (8%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+   +T +   N K  L E+L P++  AI   D+ Y K +  +      R      +  
Sbjct: 2   HL--FKTIENIQNTKYELIEDL-PEDGIAIFNYDNDYVKPLADKTKKKTYRYGIKDIEKL 58

Query: 276 FIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            ++ K +         T+ ++G  +      L G   + N L  A     +G +   +  
Sbjct: 59  DVYAKDIRVNEKGSTFTLGIKGLGEISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIKN 118

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +EK+  V  R   V + +    I   +          L  I     G+ I++     + 
Sbjct: 119 GIEKVKAVEHRLNIVPSPAGYVVIDDAFNSNPVGFRAALSVIDEFKEGKKIIITPGMVEL 178

Query: 395 ---DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR- 450
              ++ +   +G     + D  I+          +KI A I   +       +RI  ++ 
Sbjct: 179 GAIEEEENYKIGIEIAKVCDYVILVG--------QKISAPIKRALIDNNFNEDRIFTVKS 230

Query: 451 ------TAIEMLNKQDVLV 463
                   +E+    DV++
Sbjct: 231 LNDGTSKLVEIAKAGDVVL 249


>gi|291619056|ref|YP_003521798.1| Mpl [Pantoea ananatis LMG 20103]
 gi|291154086|gb|ADD78670.1| Mpl [Pantoea ananatis LMG 20103]
 gi|327395390|dbj|BAK12812.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase Mpl [Pantoea ananatis AJ13355]
          Length = 455

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  GL    I     +      +     SP ++ +A 
Sbjct: 107 RWVLAVAGTHGKTTTAGMAAWILEACGLEPGFI--IGGVPGNFDVSAKLGKSPFFVIEAD 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 165 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLRAIQKQFHHLV 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   ++   D   K+VM     +    +     G     KK+    ++ +V ++
Sbjct: 213 -RIVPGQGKILLPEHDHNLKQVMAMGCWSEQEHVG---DGGHWQAKKLTPDASRWEVLLA 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+      + L+       R E  G    
Sbjct: 269 GE-KVGEVNWGLVGEHNMHNGLMAIAAARHVGVKPEDASQALDSFINARRRLELRG-EVN 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
           G +IY D+AH   ++   L  +R+   G   I+                 ++A  L  AD
Sbjct: 327 GIKIYDDFAHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKMGVNKNELAPSLARAD 386

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +      S  P ++       +       +    + T  +     D ++V   G
Sbjct: 387 EVFLFQP---SHIPWQVADVAEACMQPAHCSADIDTLVETIAKTAQPGDSILVMSNG 440


>gi|253315887|ref|ZP_04839100.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
          Length = 429

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 123/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|327392722|dbj|BAK10144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
           ananatis AJ13355]
          Length = 438

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   +    ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALCEAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G    Q+G    I                   ALS L         +
Sbjct: 118 TVTTLVGEMAKAAGW---QVGVGGNIG----------------LPALSLL-KAPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTHSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYEN----AQVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADD  +  V      A  R +S G      HL K      +  + +  +G+        
Sbjct: 212 NADDGMTMPV----RGADARCVSFGIDIGDYHLNK-----QQGSIWLRAKGEKVLNTDEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  +  L  L     +P RF+ V  +     I    A 
Sbjct: 263 TLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGLPHRFQLVHQSRGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  LK +    +G + ++   G  +     P+   +  D   +     D    + 
Sbjct: 323 NVGSTEAALKGLE--VNGTLWLLL-GGDGKSADFSPLATYLQGDRIRLYCFGRD---GDA 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R ++       +      +A+      +   D++++
Sbjct: 377 LAALRPDVA------VRTDTLQQAMEQIARQVQPDDMVLL 410


>gi|241889121|ref|ZP_04776425.1| UDP-N-acetylmuramate--alanine ligase [Gemella haemolysans ATCC
           10379]
 gi|241864370|gb|EER68748.1| UDP-N-acetylmuramate--alanine ligase [Gemella haemolysans ATCC
           10379]
          Length = 434

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 105/314 (33%), Gaps = 39/314 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK++  + V  I + + ++S+ IG  +                    K   ++
Sbjct: 104 IAVTGAHGKTTTTTMVSNIFKHNHITSYLIGDGTGHG----------------EKHSEFM 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++   +       H L  H            TN+  DH DY   +   F+A      ++
Sbjct: 148 IAEACEYYR-----HFLAYH------PNYAIVTNIDFDHPDYFNDEHDMFDAFQSFVNQV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +   +I  DD     +  +      + +  G+ +G    +K V       +  +   
Sbjct: 197 ---KDTVVICGDD----RLASQLKPTTAKTIKYGFNEGNDYQIKNVQTTSEHSKFDVYKN 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   + G   + NA  A  L    GI    + E L++      RF      +  
Sbjct: 250 SELLGTFTMAVFGLHDISNATSAIALADINGISVEKIKESLDQYKPAERRFSEHKIGNN- 308

Query: 356 GRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  + ++  +    R      +I +F         K       +L+ AD   
Sbjct: 309 -VIVDDYAHHPSEIKATIDSACRKYEGKEVIAIFQPHTYTRTAKFLNEFAESLETADKVF 367

Query: 415 VTDDNPRSEDPEKI 428
           +        + EKI
Sbjct: 368 LCPIFASVREKEKI 381


>gi|283471006|emb|CAQ50217.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 437

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 123/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+ +   I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKESDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I  L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINALEQFDNAVILF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|255311596|ref|ZP_05354166.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276]
 gi|255317897|ref|ZP_05359143.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276s]
 gi|296437240|gb|ADH19410.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11222]
          Length = 803

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 120/366 (32%), Gaps = 47/366 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SS+ S ++       +    VV    + L+  A        +  + VTG+ GK
Sbjct: 64  GAV-VVYSSSISKKNPEFLSAKSRGNRVVHRA-ELLAELA------QDQISIFVTGSHGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V+S +  I Q +  +         I    Q+                     G  +  
Sbjct: 116 TTVSSLITAILQEAKKNPSFA-----IGGLNQEGINGGS---------------GSEYFV 155

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA         +          TN+  +H+   +  +    A ++ F   L  +     
Sbjct: 156 AEADESDGS---IRCYTPEFSVITNIDDEHLSNFEGDRELLLASLKDFA--LKTQQICWY 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFL 303
             D    +        +  +  + G       L  +       ++  + + +D    D  
Sbjct: 211 NGDCPRLR--------SCLQGHTFGLDSS-CDLHILSYYQEGWRLYFTAKYQDVVYADIE 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V NA  A G+ +++GID   +         V  R +   ++        DYA
Sbjct: 262 VQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQRKNSSET-FLFLEDYA 320

Query: 364 HTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  + +   L+ +RT    R I+ ++         +       A   AD  ++T+     
Sbjct: 321 HHPSEISCTLRAVRTAVGQRRILAIYQPHRFSRLRECIDSFPSAFKDADEVLLTEVYSAG 380

Query: 423 EDPEKI 428
           E+ E I
Sbjct: 381 EEAEDI 386


>gi|146299571|ref|YP_001194162.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacterium johnsoniae
           UW101]
 gi|189028988|sp|A5FIY4|MURC_FLAJO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146153989|gb|ABQ04843.1| UDP-N-acetylmuramate--alanine ligase [Flavobacterium johnsoniae
           UW101]
          Length = 449

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 120/360 (33%), Gaps = 48/360 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV GT GK++ +S +  I  +SG        T+ +    ++               S L
Sbjct: 114 FAVAGTHGKTTTSSILGHILHQSGAD-----VTAFVGGIVENYN-------------SNL 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G T   VEA     D+  L  +       T++  DH+D + T  A   + +    ++
Sbjct: 156 IGTGKTVTVVEADEF--DRSFL-HLHPDIACVTSMDADHLDIYGTSDAIQASFIEFASKV 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K    I       +KE+                +        V          +    
Sbjct: 213 EDKSKLFI-------TKELPLEGVQCAIN------EDAVYKAYNVRIEDGNYVFDVQTPS 259

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   D  F LPG+  + N L+A  +    G  +  + + +   + +  RF +   + +  
Sbjct: 260 EIMKDLRFGLPGKHNLMNGLMAIAMAKTYGTPTDAIAKAIASFNGIRRRFSYQIKSDKLV 319

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DYAH    +  + + +R +  GR ++ VF                 +L   D   +
Sbjct: 320 Y-IDDYAHHPTEINAVHQAVRELYPGRKVLAVFQPHLFSRTRDFADGFAESLSQFDEVFL 378

Query: 416 TDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D  P  E P +      +  ++ +     + K + +  I+      +   ++V  G G 
Sbjct: 379 MDIYPARELPMEGITSQWLLDKMTNPNRKIVAKEDLLAEIK-----ASDAPIIVTIGAGD 433


>gi|225864166|ref|YP_002749544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
 gi|225786057|gb|ACO26274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
          Length = 255

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 25/173 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 10  MNLKKL-----EEVINGGGLH-ESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEY 61

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ 
Sbjct: 62  VKEAMDNGAVASLWKKSYG------TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIG 115

Query: 120 VTGTSGKSSVASF----------VQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +TG++GK++V               ++ +  G  + QIG   TI    ++   
Sbjct: 116 ITGSNGKTTVKDIKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEF 168


>gi|20094192|ref|NP_614039.1| UDP-N-acetylmuramate-alanine ligase [Methanopyrus kandleri AV19]
 gi|19887211|gb|AAM01969.1| UDP-N-acetylmuramate-alanine ligase [Methanopyrus kandleri AV19]
          Length = 512

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 130/386 (33%), Gaps = 57/386 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE +V   + S       +  +    +V+  ++ L +            ++ V GT+GK+
Sbjct: 69  AEVVVPPPSLSRDAKPYRLAEDHGCEIVE-VKELLDML------PPTRPVIGVGGTNGKT 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + ++ +C++ GL +   G      +              L    + L          
Sbjct: 122 TTVAMIRHVCEQLGLEAPHHGLPGMQGNVG-----------LLPPLQARLPGDVSVLEIA 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                G      +  ++     TN+  DH++       Y   +  L E    +   A++ 
Sbjct: 171 TFGKRGEILEAAELSQVECVCVTNITPDHLNEAGDFLTYARCEAELLEPDTIE--LAVLN 228

Query: 248 ADDAY---SKEVMKRAHNAGCRVLSVG--------------------------YQGKFIH 278
           A D     + EV+    +     L V                           ++ +   
Sbjct: 229 AQDPLVVGAPEVVDFNGDIVYYGLDVEPFDTSEKECWCGGHVEVHEILPWVGPFKCRECG 288

Query: 279 LKKVCAIHNKQQVTIS-----VEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALV 332
           L+     +    V +S         +++   P+ G    YNAL A  +C   +G+D   V
Sbjct: 289 LRSPEPDYLATDVDLSGFRLICPDGEYEVRLPVMGLHNAYNALAAIAVCSEFLGLDVEDV 348

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG 391
           +E L+    V GR E +  +     + +DY H    ++  L+ ++      R+  V    
Sbjct: 349 VEALQSFEGVEGRLEVLWDDGE-RVVILDYGHNPAGVDATLRCVKEAYRERRVCAVIAVA 407

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTD 417
            +        + + A DLAD+ +V  
Sbjct: 408 SELGPEGDEEILRRAADLADLVVVAS 433


>gi|254832007|ref|ZP_05236662.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           10403S]
          Length = 447

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 128/396 (32%), Gaps = 57/396 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG   T S           +  Y    L+Y                       
Sbjct: 126 IRPTSYLIG-DGTGSGTKDAKYFALEACEYQRHFLAY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 162 ---KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--AELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
             +        G + +F   K V       +  +    +    F  P  G+  V NAL  
Sbjct: 213 TLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V   L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVEDVKNELKTFEGVKRRFSI--TEKGNQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             G   I++ +  E ++        + V++  G G 
Sbjct: 390 TKGNHIIKEEHTEELLKY------PEAVILFMGAGD 419


>gi|49483980|ref|YP_041204.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425853|ref|ZP_05602277.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428520|ref|ZP_05604918.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431153|ref|ZP_05607530.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433835|ref|ZP_05610193.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436752|ref|ZP_05612796.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904309|ref|ZP_06312197.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906134|ref|ZP_06313989.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909051|ref|ZP_06316869.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911365|ref|ZP_06319167.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914534|ref|ZP_06322320.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919502|ref|ZP_06327237.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924880|ref|ZP_06332546.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958488|ref|ZP_06375939.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503612|ref|ZP_06667459.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293537169|ref|ZP_06671849.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428310|ref|ZP_06820939.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|56749227|sp|Q6GFW8|MURC_STAAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49242109|emb|CAG40809.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271547|gb|EEV03693.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275361|gb|EEV06848.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278101|gb|EEV08749.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281928|gb|EEV12065.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284103|gb|EEV14226.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313246|gb|EFB43642.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317312|gb|EFB47686.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321715|gb|EFB52040.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325060|gb|EFB55370.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327315|gb|EFB57610.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331426|gb|EFB60940.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595927|gb|EFC00891.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790637|gb|EFC29454.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920014|gb|EFD97082.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095278|gb|EFE25543.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|295127710|gb|EFG57347.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315195646|gb|EFU26033.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 437

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 124/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+ +   I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKESDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|229076197|ref|ZP_04209165.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18]
 gi|229099168|ref|ZP_04230102.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29]
 gi|228684396|gb|EEL38340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29]
 gi|228707060|gb|EEL59265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18]
          Length = 436

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 112/379 (29%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFADINDVFGAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++  +       V+  G+ +      + +    +     + V    +D F     G
Sbjct: 207 EELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 NHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPE 426
           +   ++  R       ++ VF         K       +L  AD   + D      E+  
Sbjct: 320 INATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKG 379

Query: 427 KI-RAEIIHGIPGFIEKGN 444
            +   ++   I G     +
Sbjct: 380 DLTIEDLQKRIDGAELITD 398


>gi|332367387|gb|EGJ45120.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1059]
          Length = 444

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   + +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGIGYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +  +A            +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRITSKAP---IYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|301063251|ref|ZP_07203800.1| UDP-N-acetylmuramate--L-alanine ligase [delta proteobacterium
           NaphS2]
 gi|300442679|gb|EFK06895.1| UDP-N-acetylmuramate--L-alanine ligase [delta proteobacterium
           NaphS2]
          Length = 457

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 151/446 (33%), Gaps = 80/446 (17%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
             G+K D    I +     A+ +V SSA   Q+       +  I V+    + L+     
Sbjct: 56  FRGHKRDN---IQE-----ADVVVYSSAVGFQNPELQEAKDRYIPVIPRA-EMLAELMRL 106

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSG---------------LSSFQIGPTSTI 153
            YG      +A+ G  GK++  S V  I  R G                S+ ++G    +
Sbjct: 107 KYG------VAIAGAHGKTTTTSMVASILMRGGLDPTVVIGGRLDIWGGSNAKLGQGDVL 160

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
            +   ++  +  +       ++ +  + + H                             
Sbjct: 161 VAETDESDGSFLALSPSIAVVTNIDHEHMDH----------------------------- 191

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
                 + +  A        F   +P    AI+  D+   + ++ +      R ++ G  
Sbjct: 192 ------YGSMAAIRRT-FVDFINKIPFYGIAILCQDNEEIQGIIPQLKK---RYITYGMS 241

Query: 274 -GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
               +  K +        + +             +PG     NAL A  + + + ++  +
Sbjct: 242 TQADLRGKDLRNEKWGTSLEVIYRNNSMGRISVGMPGAHNALNALAATAVGLELDLEMGV 301

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGC 390
           + E L  L  +  R +  G    G  +  DY H    +   LK ++T  +  R++VVF  
Sbjct: 302 IGEGLTALGGLARRLQIKGEK-NGIMVMDDYGHHPTEIMATLKTVKTCWSEKRLVVVFQP 360

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKG 443
                         I+ + AD+ +VT   P  EDP      E +  EI  HG    I   
Sbjct: 361 HRYTRTQSLLDRFVISFNDADVLLVTPIYPAGEDPIENINSENLVREIKEHGHKEVIFCN 420

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +    + T +++L   D+++  G G+
Sbjct: 421 DLKAVVPTLLKLLTPGDLVLTLGAGN 446


>gi|76789504|ref|YP_328590.1| D-alanine--D-alanine ligase [Chlamydia trachomatis A/HAR-13]
 gi|237803192|ref|YP_002888386.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805113|ref|YP_002889267.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|76168034|gb|AAX51042.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           A/HAR-13]
 gi|231273413|emb|CAX10328.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274426|emb|CAX11221.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436311|gb|ADH18485.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9768]
 gi|296438170|gb|ADH20331.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11074]
 gi|297140671|gb|ADH97429.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9301]
          Length = 803

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 120/366 (32%), Gaps = 47/366 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SS+ S ++       +    VV    + L+  A        +  + VTG+ GK
Sbjct: 64  GAV-VVYSSSISKKNPEFLSAKSRGNRVVHRA-ELLAELA------QDQISIFVTGSHGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V+S +  I Q +  +         I    Q+                     G  +  
Sbjct: 116 TTVSSLITAILQEAKKNPSFA-----IGGLNQEGINGGS---------------GSEYFV 155

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA         +          TN+  +H+   +  +    A ++ F   L  +     
Sbjct: 156 AEADESDGS---IRCYTPEFSVITNIDDEHLSNFEGDRELLLASLKDFA--LKTQQICWY 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFL 303
             D    +        +  +  + G       L  +       ++  + + +D    D  
Sbjct: 211 NGDCPRLR--------SCLQGHTFGLDSS-CDLHILSYYQEGWRLYFTAKYQDVVYADIE 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V NA  A G+ +++GID   +         V  R +   ++        DYA
Sbjct: 262 VQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQRKNSSET-FLFLEDYA 320

Query: 364 HTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  + +   L+ +RT    R I+ ++         +       A   AD  ++T+     
Sbjct: 321 HHPSEISCTLRAVRTAVGQRRILAIYQPHRFSRLRECIDSFPSAFKDADEVLLTEVYSAG 380

Query: 423 EDPEKI 428
           E+ E I
Sbjct: 381 EEAEDI 386


>gi|15924730|ref|NP_372264.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927317|ref|NP_374850.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus N315]
 gi|21283412|ref|NP_646500.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486565|ref|YP_043786.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|148268218|ref|YP_001247161.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394286|ref|YP_001316961.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980057|ref|YP_001442316.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|255006526|ref|ZP_05145127.2| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257794123|ref|ZP_05643102.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781]
 gi|258415827|ref|ZP_05682098.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763]
 gi|258420656|ref|ZP_05683595.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719]
 gi|258438306|ref|ZP_05689590.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299]
 gi|258443764|ref|ZP_05692103.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115]
 gi|258445975|ref|ZP_05694151.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300]
 gi|258448298|ref|ZP_05696425.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224]
 gi|258454175|ref|ZP_05702146.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937]
 gi|269203378|ref|YP_003282647.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893234|ref|ZP_06301468.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117]
 gi|282927869|ref|ZP_06335480.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102]
 gi|295406051|ref|ZP_06815859.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819]
 gi|296276768|ref|ZP_06859275.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245024|ref|ZP_06928901.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796]
 gi|54037858|sp|P65475|MURC_STAAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54037859|sp|P65476|MURC_STAAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041508|sp|P65474|MURC_STAAM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56749192|sp|Q6G8I7|MURC_STAAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224735|sp|A7X3H5|MURC_STAA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082503|sp|A6U2K6|MURC_STAA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082504|sp|A5ITR2|MURC_STAA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13701535|dbj|BAB42829.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247512|dbj|BAB57902.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204853|dbj|BAB95548.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49245008|emb|CAG43469.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147741287|gb|ABQ49585.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946738|gb|ABR52674.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722192|dbj|BAF78609.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257788095|gb|EEV26435.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781]
 gi|257839420|gb|EEV63893.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763]
 gi|257843260|gb|EEV67670.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719]
 gi|257848350|gb|EEV72341.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299]
 gi|257851170|gb|EEV75113.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115]
 gi|257855217|gb|EEV78156.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300]
 gi|257858537|gb|EEV81413.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224]
 gi|257863627|gb|EEV86384.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937]
 gi|262075668|gb|ACY11641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590379|gb|EFB95458.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102]
 gi|282764552|gb|EFC04678.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117]
 gi|285817422|gb|ADC37909.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus
           04-02981]
 gi|294969048|gb|EFG45069.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819]
 gi|297178104|gb|EFH37352.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796]
 gi|302333404|gb|ADL23597.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|312830118|emb|CBX34960.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130621|gb|EFT86607.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329727526|gb|EGG63982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329733180|gb|EGG69517.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 437

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 123/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|332878268|ref|ZP_08445994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683719|gb|EGJ56590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 125/356 (35%), Gaps = 46/356 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GK++       I +++GL   ++G    I     +    +  P Y+    
Sbjct: 102 STIVAITGSNGKTTTTLLTHHIFKQAGL---EVGLGGNIGYSFAELVAHSNPPYYV---- 154

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
                       +E SS  LD   ++          N+  DH+D +    + Y  +K R+
Sbjct: 155 ------------LEISSFQLD--GIEHFAPHIAVLLNITPDHLDRYDYKFENYIASKFRI 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNK 288
                  +      ADD    + +   H    + +    +     G F+   K+  +   
Sbjct: 201 AMNQTANDYFIYD-ADDPVINDWL-TTHPLKPKCIGFSIEKELSEGAFLKDNKIHIMLEN 258

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q   I VE         L G+  + N + AA     + I +A + E L+       R E 
Sbjct: 259 QTTVIDVE------EISLKGKHNIKNTMAAAVAARLVNIRNASLRESLKGFQGAAHRLEE 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V        I    A   NS+      + TI +  + +V   G D+      ++  +   
Sbjct: 313 VKVVEGVTYINDSKATNVNSV---YFALDTIKTPIVWIV--GGQDKGNDYNSLLPYVHQK 367

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  I  +  DN        I     + I   +E  +  EA++ A       D +++
Sbjct: 368 VKAIVCLGVDNT------PILQSFYNVIDNMVETRSMEEAVKMAQRFATAGDTVLL 417


>gi|293393178|ref|ZP_06637493.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia odorifera DSM 4582]
 gi|291424324|gb|EFE97538.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia odorifera DSM 4582]
          Length = 459

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 117/358 (32%), Gaps = 28/358 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYQPGFV--IGGVPGNFEVSARLGGSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +           S                   NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+  +D + K+VM  A         VG +G +   K      +  +  + 
Sbjct: 209 -RLVPGKGKIILPDNDPHLKQVM--AMGCWSEQELVGEEGVWRANK---LTADASRYEVQ 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + G+   +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LNGETVGEVNWTLVGEHNMHNGLMAIAAARHVGVLPADACRALNDFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDLA 410
            G  +Y D+AH   ++   L  +R    G   I+                 ++A  L  A
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGINKNELAPSLGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D   +   +     P ++       +       +    +   ++     D ++V   G
Sbjct: 382 DEVFLFQPH---HIPWQVAEVAEACVQPAHWSADVDTLVEMVVKTAQPGDHILVMSNG 436


>gi|114330911|ref|YP_747133.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307925|gb|ABI59168.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 617

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 123/357 (34%), Gaps = 30/357 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++       I       +      + + + A                L   
Sbjct: 36  IGITGSAGKTTTKDLCYLILSGFYPVAQSYKSLNVVKATADFV-------------LEVE 82

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFE 235
           S    + + +  +  G     L  +K      TN+ +DH    +  +       K +L E
Sbjct: 83  SKHRFSIIEMSGNRPGALDLPLWLVKPEIAVLTNIEKDHFRAFKGESVDGIAREKAKLIE 142

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTI 293
            L  +   A++  DD   K + +R      +V+ VG         L    +      +TI
Sbjct: 143 AL-SENGTAVLNMDDPRVKVIGER---CKAKVIWVGKSKGATLRLLNATSSYPQPLTLTI 198

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             EG   + +  L G +   + L A G+ +A GI     +  L     V GR + V    
Sbjct: 199 KYEGITHEVITGLHGTYLATSVLCALGVALAAGIRLDQAIPRLALAVPVEGRMQPVVM-G 257

Query: 354 RGGRIYVDYAHTSN-SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA---LDL 409
            G     D       SL M+L  +   T+ R I V G   D    +     + A   L  
Sbjct: 258 DGVTFIRDDMKAPAWSLPMVLDFLSEATAVRKIAVVGSISDFSGDRSDKYKQFARQVLQH 317

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD+ I   DN         + E    + GF+      EA     + L   D++++ G
Sbjct: 318 ADMVIFVGDN-AHRALRARKDENDSALQGFLTL---KEASSFLQKTLRPGDLVLLKG 370


>gi|159903953|ref|YP_001551297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889129|gb|ABX09343.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 457

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 124/350 (35%), Gaps = 45/350 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S A +    +     N  I       +  S  +           + VTGT+GK++V 
Sbjct: 68  VVTSPAIAWDHCTLNALRNKGI-------EIESEISLAWKALKHIPWIGVTGTNGKTTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             +  +   + +++   G     +S       R +   P +L                +E
Sbjct: 121 HMLHHVLNSNQINTAMGGNVGIPASQIALDSIRSSRTEPNWL---------------VME 165

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS+ L+      I    G +T L  DH++ H + + Y + K RL E      S  I   
Sbjct: 166 LSSYQLETS--PNISPKIGIWTTLTPDHLERHGSLENYSDIKKRLLEN----SSIRIYNL 219

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPL 306
           DD +    +K A +     + V   G  I+           +  +  +G++     L  +
Sbjct: 220 DDHF----LKNARSKLMEGIWVSTNGAAIN-NNQADFWITSKGKLYEKGEEILDTTLLNI 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHT 365
           PG   + N L+       IG+    + + +     VP R E +  N +G  I+ D  A  
Sbjct: 275 PGRHNLQNLLLVTAAAREIGLSPRDIEQAIASFKGVPHRLEKI-ANIKGIEIFNDSKATN 333

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + ++ L+ + + T      +   GG   +G      +     A   ++
Sbjct: 334 YEAAKIGLEAVPSPT------IVIAGGQSKKGNPNDWLQALNKKACAVVL 377


>gi|254828161|ref|ZP_05232848.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
 gi|258600547|gb|EEW13872.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
          Length = 447

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 126/396 (31%), Gaps = 57/396 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG  +   +  +D            +                           
Sbjct: 126 IRPTSYLIGDGT--GNGTKDAEYFALEACEYQRHFLAY---------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 162 ---KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--AELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
             +        G + +F   K V       +  +    +    F  P  G+  V NAL  
Sbjct: 213 TLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V   L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVEDVKNELKTFEGVKRRFSI--TEKGNQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             G   I++ +  E ++        + V++  G G 
Sbjct: 390 TKGNHIIKEEHTEELLKY------PEAVILFMGAGD 419


>gi|163784268|ref|ZP_02179185.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880457|gb|EDP74044.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 237

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 92/279 (32%), Gaps = 50/279 (17%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  ++ N           +K+N    DSR  + G  FV + GN  DGH FI +   +GA 
Sbjct: 2   NLHQIANITGAKFKNLSNKKVNRFIIDSRQAKKGDFFVPLKGNNVDGHQFIDEVFKKGA- 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS- 128
                       FS+     + +LVVD+T K L+  A          I         ++ 
Sbjct: 61  ---------FGSFSSKNIEKSNVLVVDDTLKALTDIAKYKKDFIDIKIGITGTAGKTTTK 111

Query: 129 -----VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
                + S+   +    G  + QIG   T+++  ++ R                      
Sbjct: 112 EILSYLLSYFYPVYYTKGNYNNQIGLPITLANIDKNYRYG-------------------- 151

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              + AS  G   +  D +       TN+G  H +     +     K  + +    K +P
Sbjct: 152 VFELGASKKGDISYLTDILNQNIAVITNVGYGHTEGLGGFEGVLQEKKNILKTADFKIAP 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             +  ++   K              + GY+    ++  V
Sbjct: 212 KWLNINEKNIK--------------TFGYENADTNINSV 236


>gi|291616270|ref|YP_003519012.1| MurD [Pantoea ananatis LMG 20103]
 gi|291151300|gb|ADD75884.1| MurD [Pantoea ananatis LMG 20103]
          Length = 438

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   +    ++  I +V +   F          +   +I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALCEAADAGIEIVGDIELF--------CREAQASIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G    Q+G    I                   ALS L         +
Sbjct: 118 TVTTLVGEMAKAAGW---QVGVGGNIG----------------LPALSLL-KAPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTHSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYEN----AQVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADD  +  V      A  R +S G      HL K      +  + +  +G+        
Sbjct: 212 NADDGMTMPV----RGADARCVSFGIDIGDYHLNK-----QQGSIWLRAKGEKVLNTDEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  +  L  L     +P RF+ V  +     I    A 
Sbjct: 263 TLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGLPHRFQLVHQSRGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  LK ++   +G + ++   G  +     P+   +  D   +     D    + 
Sbjct: 323 NVGSTEAALKGLQ--VNGTLWLLL-GGDGKSADFSPLATYLQGDRIRLYCFGRD---GDA 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R ++       +      +A+      +   D++++
Sbjct: 377 LAALRPDVA------VRTDTLQQAMEQIARQVQPDDMVLL 410


>gi|121634884|ref|YP_975129.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis FAM18]
 gi|120866590|emb|CAM10341.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis FAM18]
 gi|325142376|gb|EGC64785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           961-5945]
 gi|325198327|gb|ADY93783.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           G2136]
          Length = 458

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 119/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL         G+      E L     
Sbjct: 265 A----DGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHAGVGIQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRIGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                ++L  AD            D     AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPVSLKEADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|323142004|ref|ZP_08076855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413536|gb|EFY04404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 466

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 91/283 (32%), Gaps = 21/283 (7%)

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A        ++           NL  DH++ H T +AY  AK  +F +   +    +
Sbjct: 168 WLAAELSSFQLEKVSSFCPDIAVVLNLTPDHLERHHTMEAYGEAKKNIFRQQ-GEVQVTV 226

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--- 302
           +  DD   +          C               +           IS +GK       
Sbjct: 227 LNYDDPIVRTWGAETKGRLCYFSR-------KEKLQQGIYMQDGNFIISWDGKQETVCNI 279

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G     N L A       G+  + + + L     +  R E+V T   G   Y D
Sbjct: 280 SELHLFGGHNEENVLAAIACGFFAGVSISDMADVLRNFRSIEHRIEYVAT-IDGVPYYND 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+   +  +K +     G II+    G D+     P+M  +      + ++     R
Sbjct: 339 SKATNT--DSTIKALEAFKDGHIIL-LAGGHDKLTPLEPMMELVKEKTDALILLGAAKER 395

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   A +  G+   +   +  +A+  A  M +K  V+++
Sbjct: 396 FNK-----AAVACGVQNIVLADSFEDAVSKAHSMAHKPQVVLL 433


>gi|298695008|gb|ADI98230.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 417

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 123/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 84  VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 141

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 142 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 172

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 173 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 227

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 228 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 287

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 288 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 345

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 346 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLF 394

Query: 465 AGKGH 469
            G G 
Sbjct: 395 MGAGD 399


>gi|228945809|ref|ZP_04108155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228813874|gb|EEM60149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 252

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 10  MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEY 61

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       +     PI+ VD+T   L   A     +    ++ 
Sbjct: 62  VKEAMDNGAIASLWKKSYG------SPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIG 115

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRL 162
           +TG++GK++V   ++ I        +  G  + QIG   TI    ++   
Sbjct: 116 ITGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEF 165


>gi|191638701|ref|YP_001987867.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BL23]
 gi|229620043|sp|B3WF58|MURC_LACCB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190713003|emb|CAQ67009.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Lactobacillus casei BL23]
 gi|327382742|gb|AEA54218.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei LC2W]
 gi|327385929|gb|AEA57403.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BD-II]
          Length = 436

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 111/372 (29%), Gaps = 53/372 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +         +S+ IG   T             +  Y    L+Y 
Sbjct: 106 IGVAGAHGKTSTTGLLAHTLSGVAKTSYLIG-DGTGKGIPDSQFFVFEADEYRRHFLAY- 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+   +  ++A    FE  
Sbjct: 164 -------------------------HPDYMIMTNIDFDHPDYYTGFEDVYDA----FETE 194

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV 295
             +   AI+ + DD + +++      A   V   G         + V             
Sbjct: 195 ANQVKKAIVAWGDDPWLRKL-----KAKVPVYYYGISDRDDFRARNVDRDTKGSSFDAYF 249

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             +    F  PL GE  V NAL    +     +D+ L+   L     V  RF        
Sbjct: 250 HDQLIGHFFVPLFGEHSVLNALAVVAVAHMEKLDAKLIARELGNFSGVKRRFAEKDLKDM 309

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH  N ++  L   R       II VF                  L  AD  
Sbjct: 310 --IIVDDYAHHPNEIKATLDAARQKYPDKAIIAVFQPHTFSRTQAYEPQYVQVLSQADQT 367

Query: 414 IVTDD-NPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +T   +   E   KIR  +I   I G        E ++  ++  N   V+V  G G   
Sbjct: 368 FLTPIFSSAREKTGKIRSEDITAQIKGAAVIHQ--EDMKPLLQYHNA--VVVFMGAGD-- 421

Query: 472 VHIVTNGEKKMS 483
              +   EK   
Sbjct: 422 ---IQKYEKAYE 430


>gi|215485254|ref|YP_002327685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312966216|ref|ZP_07780442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|215263326|emb|CAS07641.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamateligase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312289459|gb|EFR17353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|320197461|gb|EFW72075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           WV_060327]
 gi|323190230|gb|EFZ75506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           RN587/1]
          Length = 438

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    +    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVCWVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLATRVQPGDMVLL 410


>gi|15605495|ref|NP_220281.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|6919928|sp|O84767|MUDD_CHLTR RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|3329224|gb|AAC68357.1| UDP-N-acetylmuramate-alanine ligase/D-Ala-D-Ala Ligase [Chlamydia
           trachomatis D/UW-3/CX]
          Length = 803

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 120/366 (32%), Gaps = 47/366 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V SS+ S ++       +    VV    + L+  A        +  + VTG+ GK
Sbjct: 64  GAV-VVYSSSISKKNPEFLSAKSRGNRVVHRA-ELLAELA------QDQISIFVTGSHGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V+S +  I Q +  +         I    Q+                     G  +  
Sbjct: 116 TTVSSLITAILQEAKKNPSFA-----IGGLNQEGINGGS---------------GSEYFV 155

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EA         +          TN+  +H+   +  +    A ++ F   L  +     
Sbjct: 156 AEADESDGS---IRCYTPEFSVITNIDDEHLSNFEGDRELLLASLKDFA--LKTQQICWY 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFL 303
             D    +        +  +  + G       L  +       ++  + + +D    D  
Sbjct: 211 NGDCPRLR--------SCLQGHTFGLDSS-CDLHILSYYQEGWRLYFTAKYQDVVYADIE 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V NA  A G+ +++GID   +         V  R +   ++        DYA
Sbjct: 262 VQLVGMHNVLNAAAAMGIALSLGIDEGAIRNAFRGFSGVQRRLQRKNSSET-FLFLEDYA 320

Query: 364 HTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  + +   L+ +RT    R I+ ++         +       A   AD  ++T+     
Sbjct: 321 HHPSEISCTLRAVRTAVGQRRILAIYQPHRFSRLRECIDSFPSAFKDADEVLLTEVYSAG 380

Query: 423 EDPEKI 428
           E+ E I
Sbjct: 381 EEAEDI 386


>gi|253734476|ref|ZP_04868641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253727530|gb|EES96259.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|320141683|gb|EFW33518.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143768|gb|EFW35542.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 444

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 123/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 169 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 199

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 200 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 254

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 255 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 314

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 315 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 373 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILF 421

Query: 465 AGKGH 469
            G G 
Sbjct: 422 MGAGD 426


>gi|229846167|ref|ZP_04466279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
 gi|229811171|gb|EEP46888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
          Length = 437

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 134/395 (33%), Gaps = 55/395 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIELF--------CRTATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGE 309
           + +        N   +++S    G    LK          +  + +  ++      L G 
Sbjct: 215 SLT---FGEGENQAEQIVSFAENGADYWLKTENGKQYLMAKDEVILPCEEA----TLVGR 267

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A  L  A+GI+   +   L +   +  RF+     + G R   D   T+   
Sbjct: 268 HNYMNILAATALAQAVGINLDAIRTALRQFKGLDHRFQLAH-QANGVRWINDSKATNVGS 326

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +       +     +++ G G   D        ++A  +    I+        D     
Sbjct: 327 TVAALAGLYVEGKLHLLLGGDGKGADFS------ELADLINQPQIIC--YCFGRD----G 374

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A++              +AI      L   D++++
Sbjct: 375 AQLAKLSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|259907418|ref|YP_002647774.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|224963040|emb|CAX54523.1| UDP-N-acetylmuramate-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477251|emb|CAY73164.1| L-alanine adding enzyme,UDP-N-acetyl-muramate:alanine ligase
           [Erwinia pyrifoliae DSM 12163]
          Length = 491

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 122/406 (30%), Gaps = 44/406 (10%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           QD    + +    + V    + L+      +G      +AV GT GK++  + V  I   
Sbjct: 90  QDNPEVVAAREARIPVIRRAEMLAELMRFRHG------IAVAGTHGKTTTTAMVSSIYAE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            GL    +      ++          S  YL   ++       + +              
Sbjct: 144 GGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-------------- 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH+D +Q            F   LP    A++  DDA  ++++ R
Sbjct: 184 -HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVLCVDDAVIRDLIPR 242

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                                            +  +          PG     NA  A 
Sbjct: 243 V-GRQITTYGFSEDADVRVDNYHQQGAQGHFTLVRHDKPLMQVTLNAPGRHNALNAAAAV 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTSNSLEM 371
            +     ID   +L  LE       RF+F+G         ++    +  DY H    +++
Sbjct: 302 AVATEENIDDEDILNALESFQGTGRRFDFLGEYPLALSNGSAGTAMLVDDYGHHPTEVDV 361

Query: 372 ILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----- 425
            +K  R       ++++F                  L   D+ ++ D     E P     
Sbjct: 362 TIKAARAGWPDKNLVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIAGAD 421

Query: 426 -EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              +   I   G    I   +    +   +  L   D+++V G G+
Sbjct: 422 SRALCRTIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQGAGN 467


>gi|254282975|ref|ZP_04957943.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR51-B]
 gi|219679178|gb|EED35527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR51-B]
          Length = 442

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 126/360 (35%), Gaps = 32/360 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK++  S +  I + +G+    +     + +    +     S  ++ +A 
Sbjct: 91  RWVLAVSGTHGKTTTTSLLAWILEYAGMDPGFL--VGGVPANFGVSARLGGSDFFVVEAD 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++                       K       NL  DH D      A       L 
Sbjct: 149 EYDTAFFDKRSKFIHY------------KPRTLIIGNLEYDHADIFPDLAAIEQQFHHLI 196

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P++    I+   A  + V++R         +VG Q       +V A    + V  +
Sbjct: 197 -RCVPEQGHI-IHDGSAAVQRVLER--GCWTPAATVGQQPDCNWSWQVIAGGGGEFVLKA 252

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G+     +PL G   V NA  A      +GI   +  + L   + V  R E+ G+   
Sbjct: 253 PDGQSHSVTWPLFGAHNVANASAAMAAARHVGIAPRIAAKALADFNGVKRRLEWRGSPG- 311

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADI 412
           G  +Y D+AH   ++   L  ++  +  GR+I V          G        A + AD 
Sbjct: 312 GVSVYDDFAHHPTAIATTLAGMKARMEGGRLIAVIEPRSNTMRAGVHAEALGPATEAADR 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----AIEMLNKQDVLVVAGKG 468
                     E P  +   +   +    ++ +RI  I       ++ +   D +VV   G
Sbjct: 372 VF------WFEPPG-LNWALERIVSEDPDRSSRIADIDALVGVVVDTVRPGDTVVVMSNG 424


>gi|49185041|ref|YP_028293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|254737215|ref|ZP_05194919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254759045|ref|ZP_05211072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Australia 94]
 gi|49178968|gb|AAT54344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
          Length = 243

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 22/169 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L     K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 1   MNL-----KKFEEVINGEGLH-ESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       +     PI+ VD+T   L   A     +    ++ 
Sbjct: 53  VKEAMDNGAIASLWKKSYG------SPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIG 106

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNR 161
           +TG++GK++V   V+ I        +  G  + QIG   TI    +D  
Sbjct: 107 ITGSNGKTTVKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTE 155


>gi|65319483|ref|ZP_00392442.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 252

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 22/169 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L     K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 10  MNL-----KKFEEVINGEGLH-ESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEY 61

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       +     PI+ VD+T   L   A     +    ++ 
Sbjct: 62  VKEAMDNGAIASLWKKSYG------SPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIG 115

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNR 161
           +TG++GK++V   V+ I        +  G  + QIG   TI    +D  
Sbjct: 116 ITGSNGKTTVKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTE 164


>gi|329119656|ref|ZP_08248337.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464253|gb|EGF10557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 499

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 121/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  KH   +LAV GT GK++ AS +  + + + L+   +     I    Q+  +
Sbjct: 135 QWLAENVLQKH--WVLAVAGTHGKTTTASMLAWVLEYANLAPGFL-----IGGVPQNFSV 187

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +     S   V       ++    + +    +       NL  DH D    
Sbjct: 188 SARLPQATRQDPDSTSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPD 247

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P +        +   K+ +++       V + G    +   +  
Sbjct: 248 LAAI-QTQFHHLVRTIPSDGLIAANGREQSLKDTLEK--GCWTPVEAFGTSEGWQASEAD 304

Query: 283 CAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +    + + G K     + L GE    NAL         G+D     E L     
Sbjct: 305 A----QGAFDVFLRGEKAGRVAWDLMGEHNRMNALAVIAAARHAGVDVKTACEALSAFKN 360

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  G  +RG  +Y D+AH   ++   +  +R    G  I+              +
Sbjct: 361 VKRRMEIKG-RARGITVYDDFAHHPTAIATTIAGLRQRVGGARILAVLEPRSNTMKLGTM 419

Query: 402 MGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
              +  +L  AD            D +   A+ +  + G +  G   +A +   ++    
Sbjct: 420 KAALPESLAEADQVFC---YAGGVDWD--VAQALAPLGGKLHVGKDFDAFVAEIVKNAAS 474

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 475 GDHILVMSNG 484


>gi|55980312|ref|YP_143609.1| folyl-polyglutamate synthetase [Thermus thermophilus HB8]
 gi|55771725|dbj|BAD70166.1| folyl-polyglutamate synthetase [Thermus thermophilus HB8]
          Length = 414

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 129/399 (32%), Gaps = 53/399 (13%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +  R FL+             +  V GT+GK + A  +  I + +G           +  
Sbjct: 19  ERIRAFLARLGHPEEAYP---VALVGGTNGKGTTARALAAILEEAGFRVGLYTSPHLVDF 75

Query: 156 FAQDNRLTTPSPIYLAK------------------------ALSYLSSQGVTHVSVEASS 191
             +      P P                             AL + + +GV    +E   
Sbjct: 76  RERIQVQGRPIPEEKLLALLAELRPHAERLEASFFEVATALALLHFAREGVEFAVLEVGL 135

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADD 250
            G      +  + +    TN+G DH++    T +     K  +F   +P  + A      
Sbjct: 136 -GGRLDATNATEPVLSVVTNVGHDHLEVLGPTLKDVAREKAGIFRGGVPALTAARGEGLG 194

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPG 308
               E + R              G+  H + V A+      T+ +E  G+       L G
Sbjct: 195 VLRAEALARKTPLWVL-------GEDFHAEGVEALPQGLAFTLRLERTGEALRLTARLLG 247

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
             Q  N  +AA     +G     V   + +          +    RG  + +D AH    
Sbjct: 248 PHQAENLALAALSGRLLGAGWEAVKRGVARAENPGRLQRLL---WRGRELLLDGAHNPEG 304

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEK 427
              + + +R    G +   F  G  RD+    +    AL      ++T   +PRSEDP  
Sbjct: 305 ALALREALRFH--GLLPAAFVLGFSRDKDHAAM--AEALRGLGPVVLTRYASPRSEDPRA 360

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               ++   PG     + +EA+  A     +   +VVAG
Sbjct: 361 ----LLPLFPGAKVVEDPLEALEEAFS--REG-RVVVAG 392


>gi|16759121|ref|NP_454738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29140671|ref|NP_804013.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213052851|ref|ZP_03345729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213417202|ref|ZP_03350346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213426157|ref|ZP_03358907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646588|ref|ZP_03376641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213859656|ref|ZP_03385360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289823736|ref|ZP_06543348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|30316091|sp|Q8Z9H0|MURD_SALTI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293608|pir||AC0518 UDP-N-acetylmuramoyl-L-alanine,D-glutamate ligase [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501411|emb|CAD01283.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136295|gb|AAO67862.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 438

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDADRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E    K    ++
Sbjct: 158 ELSSFQLE--TTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE----KAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGVNMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLTGDRIRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAQ------QTETMEEAMRLLAPHVQPGDMVLL 410


>gi|315125601|ref|YP_004067604.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
 gi|315014114|gb|ADT67452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
          Length = 444

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 138/395 (34%), Gaps = 53/395 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S    L+  +     N  + V+ +   F  +        + + ++AVTG++GKS+V 
Sbjct: 75  IIISPGLGLKTPAVAKAINAGVEVIGDVELFARI--------NSKPVVAVTGSNGKSTVV 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +   ++ + +G      G   T                    A+  L         +E S
Sbjct: 127 TLAYEVLKTAGYKVALGGNIGT--------------------AVLDLLDGDFDVFVLELS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD  R   +K  + +  N+  DH+D + + QAY ++K+ ++          +I  DD
Sbjct: 167 SFQLDTTR--SLKTTSATVLNISEDHLDRYDSYQAYIDSKLSIYNG----AEHLVINVDD 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +  V +         LS G      HL +    +N+    +  E         + G+ 
Sbjct: 221 IQTHPVSRTLAPQ----LSFGETQGDYHLAQ---HNNEAHFMVKDEAYLPVSTLAVVGKH 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L    L     I  A     L + + +  R +FVG      + + D   T+  + 
Sbjct: 274 NYLNTLAVMALLSPFTITKAHYKTALAQFNGLAHRCQFVG-EFNDVKYFNDSKATN--VG 330

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  I ++   +  +V   GGD       ++           I    +           
Sbjct: 331 ATIAAIDSLAGEQQNLVVIAGGDAKGADLEVLKPYIEKHVKALICFGKD---------AK 381

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +++          N  EA+  A ++    D +++A
Sbjct: 382 DLVALSAKGHLTNNMSEAVALAKQLSKSGDTVLLA 416


>gi|149914524|ref|ZP_01903054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
 gi|149811317|gb|EDM71152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
          Length = 496

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 144/435 (33%), Gaps = 53/435 (12%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
             ++VS      Y   + +        + V ++   F +      +  H     ++AVTG
Sbjct: 99  ACLIVSPGIPHLYPQPNKAVAKALQAGVPVDNDIGLFFASLGGADWAVHDVAPRVVAVTG 158

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ ++ +  +   +G      G                         L        
Sbjct: 159 SNGKSTTSALIHHVLHEAGKDVQLAGNIG-------------------RGVLDIDPPGDG 199

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SS+  +  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 200 GVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPDRA 257

Query: 243 PAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-- 298
              I  D+     +  +   A    RV+ +    K            K  ++   +GK  
Sbjct: 258 VIGI--DEPEGLFMAGQLATAPGDDRVIRISVDRKL-AGPGWSVFARKGFLSEYRKGKQQ 314

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D   +  LPG+    NA  A   C ++ +   ++         +P R + +    + 
Sbjct: 315 GAIDLREIKGLPGQHNHQNACAAYAACRSLSLSPKVIERAFHSFAGLPHRSQVIAE--KD 372

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G  +V+ +  +N ++  LK +    + R I     G  ++ G   +   +   L    I 
Sbjct: 373 GVTFVNDSKATN-VDSALKALNAFANIRWIC---GGLQKEGGLAGLEPGLRNVLKAYVI- 427

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                   +  +   ++               A+  A+      + +++A     +    
Sbjct: 428 ------GREAAQFALQLTG--TEAETCTTMQTAVAHAMADAKPGETVLLA-PAAASFDQY 478

Query: 476 TNGEKKMSVDCDIIR 490
            N EK+       +R
Sbjct: 479 DNFEKRGEDFIAQVR 493


>gi|325690935|gb|EGD32935.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK115]
          Length = 444

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
           +   + +   +A    N   +   +             G    +   L V G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGISYKRYHEFLGGFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +     NA         +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRI---TSNAPIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R    S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|156932462|ref|YP_001436378.1| hypothetical protein ESA_00241 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530716|gb|ABU75542.1| hypothetical protein ESA_00241 [Cronobacter sakazakii ATCC BAA-894]
          Length = 459

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 119/362 (32%), Gaps = 36/362 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVVAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHY------------APRTLVLNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+VM  A         +G QG++   K     ++  +  + 
Sbjct: 209 -RIVPGQGKIIWPENDINLKQVM--AMGCWSEQEQLGEQGRWQAKK---LTNDASKWEVW 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+      + L GE  + N L A      +G+  A   + L        R E  G  +
Sbjct: 263 LDGECVGQVEWQLVGEHNMQNGLAAIAAARHVGVTPADAAQALGSFVNARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLA 410
            G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  A
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGVCKDDLAPSLGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAG 466
           D   +         P  I  ++       I+  +    I T +EM        D ++V  
Sbjct: 382 DEVFLFQ-------PHHIPWQVAEVADACIQPAHWSADIDTLVEMIVKTAQPGDHILVMS 434

Query: 467 KG 468
            G
Sbjct: 435 NG 436


>gi|206575746|ref|YP_002240440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
 gi|206564804|gb|ACI06580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
          Length = 438

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 154/400 (38%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIELF--------CREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDTDRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYEN----AKTCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +  +
Sbjct: 212 NADDALTMPV----RGADDRCISFGVDVGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 307 P--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A 
Sbjct: 263 PLTGQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVLDHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D     +
Sbjct: 323 NVGSTEAALNGLQL--DGTLYLLL-GGDGKSADFTPLKRYLGGDRIRLYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R ++       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPDVA------VQTETMEQAMRQIASLVKAGDMVLL 410


>gi|12007718|gb|AAG45237.1| MurD [Pseudomonas aeruginosa]
          Length = 448

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 116/350 (33%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ KS+V + V ++   +       G   T +                    
Sbjct: 109 APIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +  +    +E SS  L+    D +     +  N+  DH+D +     Y  AK R+F
Sbjct: 149 LDLLADDIELYVLELSSFQLE--TCDRLNAEVATVLNVSEDHMDRYDGMADYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA ++ ++           S G          +     ++ +   
Sbjct: 207 RG----ARQVVVNRADALTRPLIAD----TVPCWSFGLNKPDFKAFGLIEEDGQKWLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      + G     NAL A  L  A+G+    +L  L+    +  R ++V    +
Sbjct: 259 FGKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQWV-RERQ 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G   Y D   T+    +             +V+   G  +      +   +A     + +
Sbjct: 318 GVSYYDDSKATNVGAALAAIEGLGADIDGKLVLLAGGDGKGADFHDLREPVARFCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 378 L------GRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|304392258|ref|ZP_07374200.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
 gi|303296487|gb|EFL90845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
          Length = 463

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 136/396 (34%), Gaps = 49/396 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++      + + +V +   F    A       P  ++A+TGT+GKS+  + +  +
Sbjct: 79  HPQPHWTVEFARRSEVPIVGDVELFFRQMAKAGR---PAPVIAITGTNGKSTTTALIAHV 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +++G      G                   +     LS   +  V    VE SS+ +D 
Sbjct: 136 LKQAGRDVQMGGNIGR--------------AVLDLDPLSETPANQV--YVVEISSYQIDL 179

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                I    G   NL  DH++ H T + Y      + E L+     A++  DD + + +
Sbjct: 180 A--PSIAPHVGLLLNLTPDHLERHGTLENY----AGIKERLVAASDLAVVGLDDEHCRAI 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R   +   ++++   G          +     + I + G     +  L G+    NA 
Sbjct: 234 SGRISASRTPLVTISKDGAADVFFADGKLIVDGDMVIDLSG-----VGSLRGQHNGQNAA 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   C A+G+ S  +         +  R E  G    G  ++V+ +  +N+ E +   +
Sbjct: 289 AAFAACRAVGLSSEEIQSGFNSFPGLAHRMEQAG--HVGDVLFVNDSKATNA-EAVAPAL 345

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            +      I              P   +IA                E      +++   I
Sbjct: 346 SSFPKVHWIAGGLAKDGGIGSLAPQFDRIAKAYFI----------GEAAGSFASQLPDTI 395

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           P +   G+  +A+  A    +     + AGKG E V
Sbjct: 396 P-YEIAGSLKQAVNHAARDAS-----LAAGKGAEAV 425


>gi|149021790|ref|ZP_01835797.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930026|gb|EDK81013.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 444

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 92/300 (30%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +SF IG  +          +               
Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGDGTGRGLANAKYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  + +  FNA     +++
Sbjct: 155 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +Y +DA   E+ K   +A         +G       +         T+   G
Sbjct: 199 T---KGLFVYGEDA---ELRKITSDAPIYYYGFEAEGSDFVASDLLRSTTGSTFTVHFRG 252

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++   F  P  G   + NA    GL    G D  LV EHL+    V  RF     N    
Sbjct: 253 QNLGQFHIPTFGRHNIMNATAVIGLLYTAGFDLNLVREHLKTFAGVKRRFTEKIVND--T 310

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  D+AH    +   L   R    S  I+ VF                 AL+ AD   +
Sbjct: 311 VIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHALNQADAVYL 370


>gi|116750887|ref|YP_847574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699951|gb|ABK19139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 446

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 132/362 (36%), Gaps = 47/362 (12%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             + +    ++AVTGT+GK++  + + ++ + SG   F  G   T  S            
Sbjct: 98  WAWRQVDAPVIAVTGTNGKTTTTALIGEMIKASGTRVFVGGNIGTPLSRW---------- 147

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                    L    V  + +E SS  LD   L   +   G   N+  DH+D ++  + Y 
Sbjct: 148 --------LLDGDRVDCMVLEVSSFQLDTAFL--FRPEVGVLLNVTEDHLDRYRDFEEYT 197

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-----KKV 282
            +K+ +F         A+I  DD        R  N   R+L+        H      + V
Sbjct: 198 ESKLSMF-GRQESTDVAVINLDDPVCG---SRPFNGKGRLLTSSRNDPRTHAHVEDGRIV 253

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +  K +  + +          L G     N L A   C+A+ +    V         +
Sbjct: 254 VNVPWKPEFRLDLAD------LRLKGVHNEENVLAAILACLAMDVVPEAVARAAGTFGGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E+V   + GG  Y D +  +N +  ++K I        +++   G D+     PI 
Sbjct: 308 PHRVEWV--RAAGGVDYYDDSKGTN-VGAVVKAIENFDRP--VLLLLGGRDKLGSYAPIA 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            ++      + +  +  PR      I AE+   +P      +   A   A+E     D++
Sbjct: 363 ERMRTRGKGVFVFGESAPR------IHAELRDKVP-IRLFPDLEGAFSAAVERAQAGDIV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|329896223|ref|ZP_08271401.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC3088]
 gi|328921894|gb|EGG29261.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC3088]
          Length = 452

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 119/358 (33%), Gaps = 30/358 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK++ +S +  + + +GL    +     +++    +      P ++ +A 
Sbjct: 105 RWVLAVSGTHGKTTTSSLLAWMLEEAGLQPGFL--IGGVTANFGVSARLGQDPFFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++                               NL  DH D   + +        L 
Sbjct: 163 EYDTAFFDKRSKFLHYH------------PRTLILNNLEFDHADIFDSLEDIQRQFHHLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P     I     A   +V+ R   A           ++ +  +      +    I+
Sbjct: 211 -RVVPSLGQVIYPVGVAAIDDVLARGLWAQSETFGADASAQWQYQWR---NQGRGDFRIT 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +++   PL G++ + NAL A      +G+     +  L        R E +     
Sbjct: 267 QGNNEWEGSTPLSGDYNLSNALAAIIAARHVGVSPEHSIAALATFKNTKRRQELIAEVG- 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG--GDRDQGKRPIMGKIALDLADI 412
           G ++  D+AH   ++ + L+ ++       +V+           G        A   AD 
Sbjct: 326 GIQVIDDFAHHPTAIRLTLEGLKASHHNSRLVLIIEPRSNTMRMGVHANALADATRPADQ 385

Query: 413 AI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              +   N        + ++++ G     +  +++ A    +  L   DV+V    G 
Sbjct: 386 CYWLRAKNMGF----DLTSDLVGG--QVFDDVDQLVA--KLVPELAPTDVVVCMSNGD 435


>gi|91201183|emb|CAJ74243.1| similar to UDP-N-acetylmuramoylalanine D-glutamate ligase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 476

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 137/424 (32%), Gaps = 66/424 (15%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G   D   FI        + ++VS A         I     + +  +T        +  +
Sbjct: 80  GEHRD-VDFINT------DMVIVSPAVPGDSKFIQIARENGVPI--DTEM------NIFF 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              P   + VTG++GKS+  + +  I Q++    +  G                     L
Sbjct: 125 KLCPAFTIGVTGSNGKSTTTTLIGDILQQTSNKIWVGGNIG----------------KSL 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L  +       V +E SS  L+              TN+  +H+D H+   +Y +AK
Sbjct: 169 LLQLEEMKP--ADIVVLELSSFQLESLSSIKKSPCISIVTNISPNHLDRHKDIDSYIHAK 226

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +      +   AI+  DD   +   K       RVL    Q       +  A    + 
Sbjct: 227 KNIILHQ-KQSDSAILNYDDTELRTWGKE---CYGRVLWYSTQ----QPVENGAFRENEH 278

Query: 291 VTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           + IS++G            LPG+  ++N L A+      G +   + + +     +  R 
Sbjct: 279 IVISIDGNTISIPCVSKIKLPGDHNLHNVLAASCATYLHGANKQTIEKTVTSFCGLEHRL 338

Query: 347 EFVGTNSRGGRIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           EFV   ++G R Y D   T+  +++  I+    +        V   GG            
Sbjct: 339 EFV-REAKGIRYYNDSKATTPESAIAAIMSFKNS--------VLIAGGYDKGSDFEEFAA 389

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           I  +     ++       +   KI   I         P         +A +TA  +    
Sbjct: 390 ICSNYCKAVVLI-----GKTANKIEELISLKKGEKEYPHVCVANTLKDAFQTANTLTTPG 444

Query: 460 DVLV 463
            VL+
Sbjct: 445 GVLL 448


>gi|290890680|ref|ZP_06553750.1| hypothetical protein AWRIB429_1140 [Oenococcus oeni AWRIB429]
 gi|290479655|gb|EFD88309.1| hypothetical protein AWRIB429_1140 [Oenococcus oeni AWRIB429]
          Length = 438

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 116/356 (32%), Gaps = 46/356 (12%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +    +LAVTG++GK++  + + ++ +     +  +     I     +  L+   P  L
Sbjct: 94  DQFKGEVLAVTGSNGKTTTTTLIGKMLKA---DNVDVKVGGNIGIPVSELMLSDSQPRVL 150

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS     G  +                 IK      TNL   HID+H T++ Y  AK
Sbjct: 151 MLELSSFQLLGAQN-----------------IKPKIAVITNLFSSHIDFHHTRENYLRAK 193

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +  +   K+   ++      SK+  KR+                          +++ 
Sbjct: 194 FSI-TQHQTKDDYLVLNDSSIDSKDFAKRSQADDYYFSPTNTSVNTYVNDGTIYFDDEKI 252

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +S           L GE  + N L A       G+ +  + + L     +  R E VG
Sbjct: 253 IDLS--------KVVLVGEHNLENILAAVTAAKIFGVSNRAIEKVLTSFKGLEHRLEAVG 304

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                 R   + +  ++ +E   K + +      I +   G DR      ++      ++
Sbjct: 305 VIKE--RTIYNDSKATD-IEATQKALASF--KEPINLIAGGLDRGDDLNRLVPNFKNVVS 359

Query: 411 DIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I      N      E           GI   +      EA+  A E+     VL+
Sbjct: 360 LITYGQTKNKLQSAGE---------KAGIKQTVVVDTLKEAVAKAKELSRPGQVLL 406


>gi|284801997|ref|YP_003413862.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5578]
 gi|284995139|ref|YP_003416907.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5923]
 gi|284057559|gb|ADB68500.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5578]
 gi|284060606|gb|ADB71545.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5923]
          Length = 447

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 129/396 (32%), Gaps = 57/396 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG   T S           +  Y    L+Y                       
Sbjct: 126 IRPTSYLIG-DGTGSGTKDAKYFALEACEYQRHFLAY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 162 ---KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--AELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
             +        G + +F   K V       +  +    +    F  P  G+  V NAL  
Sbjct: 213 TLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V + L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVDDVKKELKTFEGVKRRFSI--TEKGNQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             G   I++ +  E ++        + V++  G G 
Sbjct: 390 TKGNHIIKEEHTEELLKY------PEAVILFMGAGD 419


>gi|260599417|ref|YP_003211988.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cronobacter turicensis z3032]
 gi|260218594|emb|CBA33861.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cronobacter turicensis z3032]
          Length = 459

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 119/362 (32%), Gaps = 36/362 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVVAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHY------------APRTLVLNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+V+  A         +G QG++   K     ++  +  + 
Sbjct: 209 -RIVPGQGKIIWPENDINLKQVL--AMGCWSEQEQLGEQGRWQAKK---LTNDASKWEVW 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+      + L GE  + N L A      +G+  A   + L        R E  G  +
Sbjct: 263 LDGECVGQVEWQLVGEHNMQNGLAAIAAARHVGVTPADAAQALGSFVNARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLA 410
            G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  A
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGVCKDDLAPSLGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAG 466
           D   +         P  I  ++       I+  +    I T +EM        D ++V  
Sbjct: 382 DEVFLFQ-------PHHIPWQVAEVADACIQPAHWSADIDTLVEMIVKTAQPGDHILVMS 434

Query: 467 KG 468
            G
Sbjct: 435 NG 436


>gi|225075298|ref|ZP_03718497.1| hypothetical protein NEIFLAOT_00301 [Neisseria flavescens
           NRL30031/H210]
 gi|224953473|gb|EEG34682.1| hypothetical protein NEIFLAOT_00301 [Neisseria flavescens
           NRL30031/H210]
          Length = 472

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 122/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 109 QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 161

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  +H D    
Sbjct: 162 SARLPQTPRQDSNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFNHADIFAD 221

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +    H  +V
Sbjct: 222 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQV 274

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 275 GEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKN 334

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 335 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 393

Query: 402 MGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
              +  +L  AD            D +   AE +  + G +  G   +A +   ++    
Sbjct: 394 KAALPESLKDADQVFC---YAGGVDWD--VAEALAPLGGKLHVGKDFDAFVAEIVKNAEA 448

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 449 GDHILVMSNG 458


>gi|312868276|ref|ZP_07728476.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           F0405]
 gi|311096021|gb|EFQ54265.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           F0405]
          Length = 444

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 103/346 (29%), Gaps = 39/346 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVAS 131
                L   +A    N   +   +             G+   + +++   G  GK+S   
Sbjct: 60  EGDKILIAGNAFRPDNNVEIAYADEHGLTYKRYHEFLGEFMRDFVSMGVAGAHGKTSTTG 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +      +S+ IG  +   S A    +                         E   
Sbjct: 120 MLSHVLSNITDTSYLIGDGTGRGSAAAKYFVFESD---------------------EYER 158

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H +  H            TN+  DH DY  + +  FNA     +++        IY +D 
Sbjct: 159 HFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI---SKGLFIYGED- 208

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
             KE+ +   +A         +        +          +   G+D   F  P  G  
Sbjct: 209 --KELRRITSSAPIYYYGFDKETNDFVASNLLRSTTGSTFNVHFRGEDLGQFHIPTFGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA    GL    G D  LV EHL+    V  RF     N  G  I  D+AH    + 
Sbjct: 267 NIMNATAVIGLLYIAGFDLDLVREHLKTFAGVKRRFTEKVVN--GTVIIDDFAHHPTEII 324

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             L   R    S  I+ +F                 AL+ AD   +
Sbjct: 325 ATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVYL 370


>gi|47097065|ref|ZP_00234636.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           1/2a F6854]
 gi|254898227|ref|ZP_05258151.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           J0161]
 gi|254912280|ref|ZP_05262292.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes J2818]
 gi|254936607|ref|ZP_05268304.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes F6900]
 gi|47014552|gb|EAL05514.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609204|gb|EEW21812.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes F6900]
 gi|293590260|gb|EFF98594.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes J2818]
          Length = 447

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 128/396 (32%), Gaps = 57/396 (14%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 75  EEIERALELGLPVI---RYHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVGA 125

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG   T S           +  Y    L+Y                       
Sbjct: 126 IRPTSYLIG-DGTGSGTKDAKYFALEACEYQRHFLAY----------------------- 161

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K      TN+  DH DY ++    FNA    FE L  +   A+    D    E+ K 
Sbjct: 162 ---KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQVKKAVFALGDD--AELRKL 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
             +        G + +F   K V       +  +    +    F  P  G+  V NAL  
Sbjct: 213 TLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSV 271

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             LC   G+    V   L+    V  RF    T      +  DYAH  + +   +   R 
Sbjct: 272 IALCDYEGLPVEDVKNELKTFEGVKRRFSI--TEKGNQVLVDDYAHHPSEIRATVNAARQ 329

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
                +++ VF                 +L+LAD   + D   + R +      A++ H 
Sbjct: 330 KYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHK 389

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             G   I++ +  E ++        + V++  G G 
Sbjct: 390 TKGNHIIKEEHTEELLKY------PEAVILFMGAGD 419


>gi|22299713|ref|NP_682960.1| cyanophycin synthetase [Thermosynechococcus elongatus BP-1]
 gi|10047072|emb|CAC07987.1| cyanphycin synthetase [Synechococcus elongatus]
 gi|22295897|dbj|BAC09722.1| cyanophycin synthetase [Thermosynechococcus elongatus BP-1]
          Length = 896

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 122/357 (34%), Gaps = 31/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  IC+++G +   +G T+T   +  D  +          A   L    V    +E + 
Sbjct: 503 LIAHICKQTGQT---VGYTTTDGIYIGDYLVEKGDTTGPQSAQLILQDPTVEIAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+      T +   + K  + E   P    A++ AD
Sbjct: 560 GGILRSGLGFDHCDVGVVLNVQADHLGLGDIDTVEQLADLKAVVVESAWP-NGYAVLNAD 618

Query: 250 DAYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTISVEG-K 298
           D     + ++                    +   G     +       K   T+ +E  +
Sbjct: 619 DPLVAAMARQVKAQVAYFSMDPHNPIIRQHIQQGGLAAVYENGYLSILKGDWTLRIEQAE 678

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSR 354
           +          F + NAL A+    A GI    +   L          PGR         
Sbjct: 679 NVPITLGARASFMIANALAASLAAFAQGISIEHIRAALTTFRTSVEQTPGRMNLFDLGQ- 737

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAH     E I + ++    G+ I V G  GDR       +G+++  + D  I
Sbjct: 738 -FSVLVDYAHNPAGYEAIGEFVQKW-PGQRIGVVGGPGDRRDQDLEQLGELSAKIFDWII 795

Query: 415 V-TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  DD+ R          I  G+        +    + + AI+ A++   K  ++V+
Sbjct: 796 IKEDDDTRGRPRGDAAYWIERGVHHHSVQRQYDIIHDEVAAIQFALDRAPKGSLVVI 852


>gi|27364038|ref|NP_759566.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio vulnificus CMCP6]
 gi|29611803|sp|Q8DEL1|MURC_VIBVU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27360155|gb|AAO09093.1| UDP-N-acetylmuramate--alanine ligase [Vibrio vulnificus CMCP6]
          Length = 486

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 144/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA+  +   A ++ + S       I    P +      +        + A  +  +H
Sbjct: 64  AQKGAKVYIGHQATNVAEASVVVVSTAINEANPEVKAAREARIPVVRRAEMLAELMRFRH 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 124 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 175 IAEADESDASFL---------------HLQPMVCIVTNIEADHMDTYGGDFETLKQTFID 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + + T
Sbjct: 220 FLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSEDADVRIENYRQEGQQGKFT 276

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
            +  + +  D    +PG     NA  A  +     I    +L  +        RFE +G 
Sbjct: 277 VVRKDCEALDITLNIPGRHNALNAAAAIAVATEDEIGDDAILAAMVGTQGTGRRFEHLGE 336

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ ++  R      R++++F                  L
Sbjct: 337 FETGNGNVMLVDDYGHHPTEVDVTIQAARNGWQEKRLVMIFQPHRYSRTRDLYDDFANVL 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNK 458
           +  D+ ++ D     E    I       +   I    +I+ I  A           +L +
Sbjct: 397 EQVDVLVMLDVYAAGEK--AIAGADSRSLCRTIRSRGKIDPIFVADTQQLPEVLANILQE 454

Query: 459 QDVLVVAGKGH 469
            D+L+  G G 
Sbjct: 455 GDLLLAQGAGD 465


>gi|332686272|ref|YP_004456046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
 gi|332370281|dbj|BAK21237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
          Length = 455

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 37/333 (11%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +QQI   +G    +      I   A +          L   LS     G          
Sbjct: 128 MIQQILD-AGRQQGKARLAGNIGYPASEITQHATKDDLLVMELSSFQLLG---------- 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                  +          TN+   H+DYH+T++ Y +AK ++ ++ + +E   II  +  
Sbjct: 177 -------VSSFYPTMAVITNIYEAHLDYHKTRENYVSAKWQI-QQNMEQEDQLIINWNQP 228

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             +E++K          +         L +   ++ K ++ +SV+         +PG   
Sbjct: 229 ELREMVKTTRATVVPFSTYEVVNGAYLLNET--LYFKDEIIMSVD------ELGVPGNHN 280

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NAL A  +     I +  + E L +   V  R +++ T  +  R + + +  +N L  
Sbjct: 281 IENALAAICVAKLYNIANESIRETLHRFSGVAHRTQYIDTIKQ--RKFYNDSKATNILAT 338

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  +    S ++I+    G DR      ++  +  DL  I +  +     E   KI   
Sbjct: 339 KM-ALSGFPSNQLIL-LAGGLDRGNDFDELI-PVLKDLKGIVLFGETK---EKLRKIAK- 391

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              G+       N  +A+R A E+  K D +++
Sbjct: 392 -NAGVLIIKTAANMTDAVREAFEISQKNDTILL 423


>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]
          Length = 479

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 168/431 (38%), Gaps = 40/431 (9%)

Query: 68  AEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVS    L+    S  ++S   +L   +       FA+ +  +    ILAVTGT+G
Sbjct: 76  ADMVVVSPGVPLESHGLSFLLQSGKRVLSELD-------FAAEILPR-SIKILAVTGTNG 127

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+VA+F  Q+    G+  F  G      S A    LT PSP  + +             
Sbjct: 128 KSTVATFSGQMLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSPKPVFQ-----------VA 176

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VE SS+ L+               NL  DH++ H+T + Y   K RL   +   +   +
Sbjct: 177 VVEVSSYQLEVPN-KHFCPSVAVVLNLTSDHLERHKTMKNYAITKCRLLSHMTNSKLGIL 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-- 303
                 +  +++  A       +++ + G F  + KV        + +   G   +    
Sbjct: 236 -----PFGNKLLNEAMEELVNEVNLAWIGAFPGV-KVDKEEKVASLRVPAIGVVSELKLG 289

Query: 304 -FPLPGEFQVYNALVAAG--LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
              + G    YNA VAA   L + +GID+  +   +EKL V P R + V  +S G     
Sbjct: 290 ALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIEKLRVPPHRMQIVHKDSYGVTWID 349

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDD 418
           D   T+  +E     +  +   + +++ G        +     +  ++       ++T  
Sbjct: 350 DSKATN--VEATYTGLLGLKEQKSVILLGGLAKVSNSQESNGFEQLVEPLKYHRCVITFG 407

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
                  +K  ++    IP F E  N  +A+  A  +    D +V++  G  +     N 
Sbjct: 408 FS-GPLIQKTLSDDGLSIPCF-EAANLEDAVNCARSVARYGDAVVLS-PGCASFDEFRNF 464

Query: 479 EKKMSVDCDII 489
           E +  V  +++
Sbjct: 465 EHRGKVFQELV 475


>gi|329725481|gb|EGG61961.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           VCU144]
          Length = 437

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 127/360 (35%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +            S  +  +A  Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMG--------LPGSDYFAFEACEY- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                         H L  H            TN+  DH DY +     ++A    F+ +
Sbjct: 155 ------------RRHFLSYH------PDYAIMTNIDFDHPDYFKNIDDVYDA----FQHM 192

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
            L  +   I + DD Y +++     +    V   G+ +   I+ K +       Q  + +
Sbjct: 193 ALNVKKGIIAWGDDEYLRKL-----DVDIPVYYYGFKETDEIYAKNIQITEKGTQFDVYI 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G   + NAL    +     ++   + E L     V  RF     +++
Sbjct: 248 KGEFYDQFLSPQYGNHNILNALSVIAISYLENMNVENIKEALITFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VLVDDYAHHPREISATIETARKKYPKKDVVAVFQPHTFSRTQAFLNEFAESLSKADQV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +      E+   +   ++I+ I G             +I++L K D  V++  G G 
Sbjct: 366 FLCEIFGSIRENTGDLTIEDLINRIDGSTLID------ENSIDVLEKFDNAVILFMGAGD 419


>gi|319892171|ref|YP_004149046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161867|gb|ADV05410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 449

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 124/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TGT+GK++V S +  +  +S  +    G    ++S          +  YL   L
Sbjct: 111 APIIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGFVASK---VAQEVKTDEYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+ H                  +      TNL   H+DYH+  + Y NAK R+F
Sbjct: 168 SSFQLLGIEHY-----------------RPHIAIITNLYSAHLDYHENLENYQNAKKRIF 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E     ES  +I+ D    +  +        ++L    Q +   +           V + 
Sbjct: 211 EN--QTESDYLIFND---KQRHLIDTSKIRAKILYFSTQHRVDGIYVEKEYIVYNGVRL- 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      LPGE  + N L A    I  G+  + +++ L     +  R +++G N  
Sbjct: 265 ----IHLDDIVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFSGIAHRLQYIGNNKT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               Y + +  +N+L      + +     I +    G DR  G   ++  +        +
Sbjct: 321 NK--YYNDSKATNTLATQF-ALSSFKQPVIWLC--GGLDRGNGFDELIPYM---NNVRVM 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           VT      E  +K            I   +  +A+     ++   DV+++
Sbjct: 373 VT----FGETQDKFVKLGESQGKYVIRAKDVTDAVAKVQVVIEPNDVVLL 418


>gi|118602749|ref|YP_903964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567688|gb|ABL02493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 433

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 147/422 (34%), Gaps = 60/422 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I +S   +  +          I V+ +  +  S FA          I+ +TG++GKS+V 
Sbjct: 65  IFISPGIAQNESIVIWAKEQNIPVISDI-ELFSRFAK-------APIIGITGSNGKSTVT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             + Q+   +G+     G   T      +                    + + +  +E S
Sbjct: 117 QLLTQMIINAGMQVAMGGNIGTPVLDCLN--------------------EKIEYYVLELS 156

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ LD      + LI G   N+  DH+D +Q  + Y N+K+ L++         +I  D+
Sbjct: 157 SYQLDYSH--HLNLIVGVVLNITPDHLDRYQNFKHYINSKLSLYQHC----QHLVINLDE 210

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             +   +    NA C  +S+  Q              +     V +S+          L 
Sbjct: 211 PLTPPKV----NAKCFGISIPKQADDFGTVTCHDTYYLLKGDNVLMSIN------EVQLI 260

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE    N L A  L   I +    +++ ++    +  R E+V         Y + +  +N
Sbjct: 261 GEHNTRNILAALALGDQIRLPIISMIQSIKNFKGLEHRLEWVAKKQNID--YYNDSKATN 318

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++  I      +   + IV+   G  + +   P+   I   +  + ++     + E    
Sbjct: 319 AISTITAIQALMRKHQNIVLILGGIAKQENYTPLFKLINKSITSVILIGQSAQQFE---- 374

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
              EI              +A+  A  M+N   +L+    G  +  +  + E +     +
Sbjct: 375 --QEI---NTNTSHAKTMKDAVNVAHSMINNGTILL--SPGCASFDMFDDFEHRGRAFKE 427

Query: 488 II 489
            +
Sbjct: 428 CV 429


>gi|303235010|ref|ZP_07321634.1| bifunctional protein FolC [Finegoldia magna BVS033A4]
 gi|302493865|gb|EFL53647.1| bifunctional protein FolC [Finegoldia magna BVS033A4]
          Length = 415

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 133/381 (34%), Gaps = 47/381 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ V GT+GK S ++F+ Q  +  G  +        I+ + +       S     +   
Sbjct: 40  KIIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFMRIFE 99

Query: 176 -------------------------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                                    Y + Q   +V +E    G         + +    T
Sbjct: 100 IIKNTIEENDIKVSTFEFITLCAIYYFAEQKCEYVVLEVGMGGRLDATNATDETLLSVIT 159

Query: 211 NLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            +G DH +Y   T +     K  + ++        ++Y       +V +         L 
Sbjct: 160 KIGLDHQEYLGNTLEEIAYEKACIMKQ----NGRCVVYNQQESVLDVFREVAEERNNKLY 215

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI----AI 325
           +    +  +++     +       S + K+      L G +Q++NA +A          +
Sbjct: 216 ICDFDEAKNIEINATHN-------SFDWKNLHIETRLVGRYQLFNAQLALTAIDVLRDEL 268

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    ++   +  + +P RF+ +        +  D  H ++ ++  LK+      G   
Sbjct: 269 DLSDEDIINGFKNAY-IPARFDVI---RHNPTVIYDGGHNADGVKA-LKSSIESVFGDKK 323

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +VF  G  +D+     +  I  +       T D+PR+   E ++ +I       + K N 
Sbjct: 324 IVFVYGVLKDKDYNDEIKLIHENAKAFVTFTPDSPRALKAEDLKKQIEVYSDNVVAKSNV 383

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A+  AIE   K DV+++ G
Sbjct: 384 NDAVDYAIEHF-KDDVIIIFG 403


>gi|260775368|ref|ZP_05884265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608549|gb|EEX34714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 441

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/340 (19%), Positives = 123/340 (36%), Gaps = 62/340 (18%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L         N  + VV +   F          +  + ++A+TG++GKS
Sbjct: 71  ADLVVANPGIALATTEIQQALNAGVQVVGDIELFA--------WQVDKPVVAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L  Q      +
Sbjct: 123 TVTDLTGVVANAAGVKTAIGGNIGVPA--------------------LELLDQDAELYVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L A +F NL  DH+D +   + Y  AK+R+FE+        I+ 
Sbjct: 163 ELSSFQLE--TTSSLSLKAAAFLNLSEDHMDRYDDMEGYRQAKLRIFEQ----AQTCIVN 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
           ADD                  +   +     ++       +  V + VEG+++       
Sbjct: 217 ADDPA----------------TYPDKKDAPLVEFSLEKSCEFHVKV-VEGREYLCHQDAK 259

Query: 304 ------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G   V NALV   L    G+D +L ++ L+  + +  R + V  N  G +
Sbjct: 260 ILASDELSLVGRHNVANALVVLALLEQAGVDISLGIDALKSYNGLTHRCQVVADN-NGVK 318

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              D   T+ +  +   +  +++    ++V G G   D  
Sbjct: 319 WVNDSKATNVASTLAALSGLSLSGKLYLLVGGDGKGADFS 358


>gi|57652038|ref|YP_186623.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87159924|ref|YP_494380.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195554|ref|YP_500360.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221845|ref|YP_001332667.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161509957|ref|YP_001575616.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|258424154|ref|ZP_05687036.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635]
 gi|258452291|ref|ZP_05700304.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948]
 gi|262049049|ref|ZP_06021927.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30]
 gi|262051815|ref|ZP_06024032.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           930918-3]
 gi|282925627|ref|ZP_06333276.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765]
 gi|284024787|ref|ZP_06379185.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294849901|ref|ZP_06790640.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754]
 gi|68565674|sp|Q5HF34|MURC_STAAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892742|sp|Q2FFZ8|MURC_STAA3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122539287|sp|Q2FXJ0|MURC_STAA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|172048949|sp|A6QHS3|MURC_STAAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082505|sp|A8Z4G7|MURC_STAAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|57286224|gb|AAW38318.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87125898|gb|ABD20412.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203112|gb|ABD30922.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374645|dbj|BAF67905.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368766|gb|ABX29737.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257845775|gb|EEV69807.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635]
 gi|257860016|gb|EEV82851.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948]
 gi|259160309|gb|EEW45336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           930918-3]
 gi|259162866|gb|EEW47430.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30]
 gi|282592407|gb|EFB97421.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765]
 gi|294823240|gb|EFG39670.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754]
 gi|315197209|gb|EFU27548.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|329726994|gb|EGG63451.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 437

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 123/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|229105316|ref|ZP_04235965.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28]
 gi|228678242|gb|EEL32470.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28]
          Length = 436

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 112/379 (29%), Gaps = 48/379 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQY------TSVAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 117 GLLAHVMQGAHPTSYLIG-DGTGHGVENSKYFVFEACEYRRHFLSY-------------- 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F A   +  ++   +   I   DD
Sbjct: 162 ------------NPDYAIMTNIDFDHPDYFADINDVFGAFQEMALQV---KKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++  +       V+  G+ +      + +    +     + V    +D F     G
Sbjct: 207 EELQKIQAKVP-----VIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    +C    +D   V   L     V  RF       +   I  DYAH    
Sbjct: 262 NHSVLNALAVIAICHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPE 426
           +   ++  R       ++ VF         K       +L  AD   + D      E+  
Sbjct: 320 INATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKG 379

Query: 427 KI-RAEIIHGIPGFIEKGN 444
            +   ++   I G     +
Sbjct: 380 DLTIEDLQKRIDGAELITD 398


>gi|77460896|ref|YP_350403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf0-1]
 gi|118595675|sp|Q3K742|MURD_PSEPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77384899|gb|ABA76412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf0-1]
          Length = 448

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 116/350 (33%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A++G++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA ++ +M           + G          +   + ++ +   
Sbjct: 207 RG----AKQFVVNRQDALTRPLMGEGQPCW----TFGLSKPDFKAFGLREENGEKYLAFE 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L     +  R ++V     
Sbjct: 259 FQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLVALRTFAGLEHRCQWVRDLDG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G      A    +    ++ +     G+  VV   GGD    +   +           I
Sbjct: 319 VGYYNDSKATNVGAALAAIEGLGADIDGK--VVLIAGGDGKGAEFKDLRDPVATHCRAVI 376

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D +KI   I   +P  I     ++A+          DV+++
Sbjct: 377 LM-----GRDSDKIGEAIGDAVP-LIRATTLVDAVAQCRAAAQPGDVVLL 420


>gi|70726183|ref|YP_253097.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus haemolyticus
           JCSC1435]
 gi|109892743|sp|Q4L784|MURC_STAHJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68446907|dbj|BAE04491.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 437

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 122/360 (33%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T       +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPASDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY +      +A    F+ +
Sbjct: 162 -------------------------HPDYAIMTNIDFDHPDYFKDIDDVASA----FQSM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                 AII + DD + +++      A   +   G  +   I+   +       Q  + V
Sbjct: 193 AHNVKKAIIAWGDDDHLRQL-----KADVPIYYYGLNKNDDIYADNIQITDKGTQFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+ +D FL P  G+  + NAL    +     +D   + E LE    V  RF    TN  
Sbjct: 248 NGEYYDQFLSPQYGDHNIQNALAVIAISYLEKMDVNNIKEALETFGGVKRRFN--ETNVA 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R    +  I+ VF                 +L  AD  
Sbjct: 306 NQVLVDDYAHHPREISATIETARKKYPNKDIVAVFQPHTFSRTQAFLDEFATSLSKADHV 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + +      E+   +   ++I+ I G              I++L++ D  V++  G G 
Sbjct: 366 YLCEIFGSIRENTGDLTIQDLINRIDGSALIEENN------IDVLDQFDNAVILFMGAGD 419


>gi|325144437|gb|EGC66737.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M01-240013]
          Length = 458

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 119/360 (33%), Gaps = 22/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L V GT GK++ AS +  + + +GL+   +     I    ++  ++   P    +
Sbjct: 103 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGVSARLPQTPRQ 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 158 DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAI-QTQFH 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   +        ++ + +       V   G +  +   +            
Sbjct: 217 YLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEANA----DGSFD 270

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++GK      + L G     NAL        +G+      E L     V  R E  GT
Sbjct: 271 VLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALGAFKNVKRRMEIKGT 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDL 409
            + G  +Y D+AH   ++E  ++ +R    G  I+              +     ++L  
Sbjct: 331 -ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTMKSALPVSLKE 389

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           AD            D +   AE +  + G +  G   +A +   ++     D ++V   G
Sbjct: 390 ADQVFC---YAGGVDWD--VAEALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILVMSNG 444


>gi|117619646|ref|YP_858325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561053|gb|ABK38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 427

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 121/351 (34%), Gaps = 44/351 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV S   +L        +   + +V +   F+              ++A+TG++GKS
Sbjct: 58  AHMIVASPGIALATPELQAAAEFGVRIVGDIELFVREA--------QVPVIAITGSNGKS 109

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +GL     G   T +                      L  Q +    +
Sbjct: 110 TVTTLVGEMIAEAGLKVGVGGNIGTPA--------------------LELLKQPMDLCVL 149

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A    NL  DH+D +Q    Y  AKM + +         +I 
Sbjct: 150 ELSSFQLE--TTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQH----SQHILIN 203

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DDA      +   + G    S G      +    C +  +  +T+  E         + 
Sbjct: 204 RDDA------QTLPDVGQVWQSFGL---DCNGYGRCELDGRHWLTLHGEPLLAVDEMKIV 254

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  LC A+GI     L  L +   +P R  FV   +    I    A    
Sbjct: 255 GAHNQANALAAMALCDAVGIPREPQLRVLRRFEGLPHRARFVREVNGVRWINDSKATNVG 314

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +    +  +R    GR+ ++   G  + Q   P+   +   +  +     D
Sbjct: 315 ATLAAVAGVRESVKGRL-LLLAGGQGKGQDFGPVQALLGSQIDHMYCFGQD 364


>gi|30061655|ref|NP_835826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 2457T]
 gi|30039897|gb|AAP15631.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
 gi|313646529|gb|EFS10990.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
          Length = 438

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 151/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDCHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NALVA  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P++  +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLVRYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|323488418|ref|ZP_08093665.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
 gi|323397925|gb|EGA90724.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
          Length = 437

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 120/392 (30%), Gaps = 50/392 (12%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P LV         +      G      +  A+TG  GK+S    +  +       S+
Sbjct: 72  DDHPELVEARELGATIIRYHEFLGDLMRQYVSVAITGAHGKTSTTGLMAHVLGGYKPVSY 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            IG  + +                  +   +  ++   +       H L  H        
Sbjct: 132 LIGDGTGVG----------------QEDSHFFVAEACEYRR-----HFLAYH------PD 164

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAG 264
               TN+  DH DY       F A    FEE+  +    II   DD Y +++        
Sbjct: 165 YAIMTNIDFDHPDYFTGIDDVFKA----FEEMAQQVKKCIIACGDDEYLQQIQA---PTP 217

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCI 323
                 G +  F   + +    +     + +  + F  F  P+ G+  + NAL    LC 
Sbjct: 218 VVYYGFGEENDFQ-ARNIVKSVDGTTFDVVIRNEFFHTFKLPMFGDHAILNALAVISLCH 276

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
              I + ++ +  E    V  RF       R   +  DYAH    +   L++ R      
Sbjct: 277 YESIPADIIQQQFEDFEGVKRRFTQTAIADR--ILIDDYAHHPTEIRATLQSARQKYPER 334

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIPGFI 440
            +I +F                  L  AD   + D      E    +   ++   I    
Sbjct: 335 ELIAIFQPHTFTRTQTFLQEFADCLTEADHVYLCDIFGSAREKAGTLKIQDLAEKI---- 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVL-VVAGKGHET 471
            +G+ I  +     +    + + +  G G  T
Sbjct: 391 -EGSHILQLDEVASLAEHGNAVYLFMGAGDVT 421


>gi|188535054|ref|YP_001908851.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia tasmaniensis Et1/99]
 gi|188030096|emb|CAO97982.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia tasmaniensis Et1/99]
          Length = 450

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 126/391 (32%), Gaps = 36/391 (9%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A +  N P L               +   H   ++AV GT GK++ A  V  I Q  G
Sbjct: 78  VEAVLERNIPYL------SGPQWLHDFVLRDH--WVIAVAGTHGKTTTAGMVAWILQACG 129

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                +     +      +     SP ++ +A  Y  +                      
Sbjct: 130 YEPGFV--IGGVPGNFDVSAKLGKSPFFVIEADEYDCAFFDKRAKFVHYC---------- 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                    NL  DH D ++  +A       L   ++P +   I+   DA  K+VM  A 
Sbjct: 178 --PRTLILNNLEFDHADIYEDLRAIQKQFHHLV-RIVPGQGKIILPEHDANLKQVM--AM 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
                  +VG  G +   K      +     + ++G+   +  + L GE  + N ++A  
Sbjct: 233 GCWSEQEAVGENGCWQVKK---LSPDASHWEVWLDGERVAEVNWSLVGEHNMRNGMMAIA 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +G+        L        R E  G  S G ++Y D+AH   ++   L  +R   
Sbjct: 290 AARHVGVKPEDAGRALNDFINARRRLELRG-ESNGIKVYDDFAHHPTAINATLAALRGKV 348

Query: 381 SG--RIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V          G        +L  AD   +   +       ++    I    
Sbjct: 349 GGTARILAVLEPRSNTMKMGISKNDLAPSLGRADEVFLYQPHHIPWQVSEVADACIQPAH 408

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    +EAI     + +  D ++V   G
Sbjct: 409 WSADIDTLVEAIAK---IAHPGDTILVMSNG 436


>gi|16763516|ref|NP_459131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167989999|ref|ZP_02571099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168243459|ref|ZP_02668391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194448105|ref|YP_002044096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197265563|ref|ZP_03165637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198243206|ref|YP_002214078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351465|ref|YP_002225266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855640|ref|YP_002242291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|30316095|sp|Q8ZRU4|MURD_SALTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16418625|gb|AAL19090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194406409|gb|ACF66628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197243818|gb|EDY26438.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937722|gb|ACH75055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271246|emb|CAR36034.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205331455|gb|EDZ18219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205337477|gb|EDZ24241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|206707443|emb|CAR31716.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261245359|emb|CBG23148.1| D-glutamic acid adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991804|gb|ACY86689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301156754|emb|CBW16229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911095|dbj|BAJ35069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|323128446|gb|ADX15876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|326621822|gb|EGE28167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326626492|gb|EGE32835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
 gi|332987079|gb|AEF06062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 438

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDADRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E    K    ++
Sbjct: 158 ELSSFQLE--TTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE----KAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGVNMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLTRYLTGDRIRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAQ------QTETMEEAMRLLAPRVQPGDMVLL 410


>gi|62178693|ref|YP_215110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224581969|ref|YP_002635767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|75484866|sp|Q57TD2|MURD_SALCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62126326|gb|AAX64029.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224466496|gb|ACN44326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322713146|gb|EFZ04717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 438

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +  E I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIELF--------CREAQEPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDADRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E    K    ++
Sbjct: 158 ELSSFQLE--TTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE----KAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGVNMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLTRYLTGDRIRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAQ------QTETMEEAMRLLAPRVQPGDMVLL 410


>gi|308389287|gb|ADO31607.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D- glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis alpha710]
          Length = 458

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 119/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL         G+      E L     
Sbjct: 265 A----DGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHAGVGIQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRIGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                ++L  AD            D     AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPVSLKEADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|304380665|ref|ZP_07363336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340772|gb|EFM06701.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
          Length = 444

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 124/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 169 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 199

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +  +       + V
Sbjct: 200 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQIMDKGTAFDVYV 254

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 255 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 314

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 315 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 373 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILF 421

Query: 465 AGKGH 469
            G G 
Sbjct: 422 MGAGD 426


>gi|262195186|ref|YP_003266395.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
           ochraceum DSM 14365]
 gi|262078533|gb|ACY14502.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
           ochraceum DSM 14365]
          Length = 490

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 117/363 (32%), Gaps = 41/363 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +++S            R     ++ +          +         ++A+TGT+GK
Sbjct: 73  GADYVLMSPGVPELPEMQAARDAGAEVIAEIEL-------AYRCLHPEAQLIAITGTNGK 125

Query: 127 SSVASFVQQICQRS---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           S+  +    +CQ +   G      G    + +      +  P                  
Sbjct: 126 STTTALTGALCQAASDAGAPPTFCG--GNLGNHPLIEAVDHP--------------ANTA 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              V A   G       G +    +  N+  DH+D + T   Y + K R++      +  
Sbjct: 170 GGFVVAEVAGFMLETCAGFRPNVAACLNITEDHLDRYGTMDVYASMKTRVYR----WQRA 225

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDF 300
                 +A+    +  A  A  RVL    +           +  ++   +     +G + 
Sbjct: 226 DDFAIANAHCARTLAGAQAAAGRVLVFDAEAPLPPGTCGAYLSPERDEIVLRPEADGPEH 285

Query: 301 DF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            F     PL G+  + NA+ A      +G+    +            R E VG   +G  
Sbjct: 286 RFPAADLPLIGQHNLENAMAAYLAAHLVGVSDDAIRAGARSFRPQKHRMERVGE--KGEV 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           ++ D +  +N +  +  ++R        V+   G D+     P+   +      + ++ +
Sbjct: 344 VFYDDSKGTN-VAAVAASMRGFPRPA--VLIAGGVDKGGSYAPMFEALRDVARGLVLIGE 400

Query: 418 DNP 420
             P
Sbjct: 401 ARP 403


>gi|238761744|ref|ZP_04622718.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia kristensenii ATCC
           33638]
 gi|238699858|gb|EEP92601.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia kristensenii ATCC
           33638]
          Length = 461

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 122/363 (33%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAIAGTHGKTTTAGMVTWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLVMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P     I+  +D + K+VM  A         VG  G +   +KV    +  +V 
Sbjct: 207 LV-RLVPGTGKIIVPDNDNHLKQVM--AMGCWSEQELVGETGSWF-ARKVAVDASVYEVF 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E    +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDNE-LVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  +++      I+  +    I T ++M        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAHWSADIDTLVDMVVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|220904382|ref|YP_002479694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|254766049|sp|B8IZT9|MURD_DESDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219868681|gb|ACL49016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 434

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 120/398 (30%), Gaps = 70/398 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S    +   +  +      ++ +         A R     P  +LAVTGTSGK+
Sbjct: 80  AAFVVPSPGMPVARLAGLVDEERAEILAE------MELAWRYLENEP--VLAVTGTSGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + AS    +    G + F  G   T  S                     LS      + +
Sbjct: 132 TTASLAAAMLHEQGYAVFLGGNIGTPLSEYV------------------LSGHKADVLVL 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L           AG   N+  +H+DYH+    Y  AK RLF             
Sbjct: 174 EISSFQL--QTCSTFCPRAGILLNITPNHLDYHKDMAEYTEAKFRLFR-----------C 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+     + +   +   R    G + + +++                          L 
Sbjct: 221 QDEGDLAVLGESLRSLAAR---YGLKARQVYVSDAGRFSGSS----------------LM 261

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N   A   C   G+        L +   +P R E V        +      T +
Sbjct: 262 GAHNRVNEEAAWQACRLFGVSEENAARALARFAPLPHRLERVRELEGVLFVNDSKCTTVS 321

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           SL++ L+         + +V   G  +      +   +   ++ +A+        E    
Sbjct: 322 SLKVALEAF----DRPVRLVC-GGKFKGGDLAGLADLVKNRVSAVALFGAGREHFERA-- 374

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                  G+       +   A++       + DV+++A
Sbjct: 375 -----WQGLVPMTWHASLEPAVKHLAASACRGDVVLMA 407


>gi|146310298|ref|YP_001175372.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           sp. 638]
 gi|145317174|gb|ABP59321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter sp.
           638]
          Length = 438

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 84/407 (20%), Positives = 151/407 (37%), Gaps = 72/407 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S  ++L   S +  ++  + +V +   F          +    ++A+TG++GKS
Sbjct: 66  ADLIVASPGFALAHPSLSAAADAGVEIVGDIELF--------CREAQAPVIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMAKAAGINVGVGGNIGLPALM--------------------LLDQDRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +  +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLHAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR--- 421
              S E  L  +R    G + ++ G             GK A   +    +T D  R   
Sbjct: 323 NVGSTEAALNGLR--VDGTLYLLLGG-----------DGKSADFSSLKPYLTGDKIRLYC 369

Query: 422 ----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +   +R EI        +     +AIR     +   D++++
Sbjct: 370 FGRDGAELAALRPEIA------TQTETMEQAIRLIAPAVQPGDMVLL 410


>gi|187479352|ref|YP_787377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           avium 197N]
 gi|118595642|sp|Q2KVF5|MURD_BORA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115423939|emb|CAJ50491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bordetella avium
           197N]
          Length = 508

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 136/390 (34%), Gaps = 59/390 (15%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A          +LAVTGT+GK++V +  +Q+ +  GLS+   G           
Sbjct: 118 RALASLAEARAYHP--RLLAVTGTNGKTTVTALTRQLIEACGLSARAAGNI--------- 166

Query: 160 NRLTTPSPIYLAKALSYLSSQGV-THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                 SP  LA  +  L    +     +E SS  L+      ++  A    N+ +DH+D
Sbjct: 167 ------SPAALASLMEALDQDALPDVWVLELSSFQLE--TTHSLQADAAVVLNVTQDHLD 218

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           +H   QAY  AK RL    L     AI+  DD  +  ++   +    R        +   
Sbjct: 219 WHGDMQAYAQAKARL----LKMARVAIVNRDDPLTLAMVADVNGLNVRSFGRDLPQRVGD 274

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFL------------------------FPLPGEFQVYN 314
           +           V       D   +                          + G     N
Sbjct: 275 MGLELGQGVAWLVACEPSDFDEPVVRRKKDAPPPQRGEGRMSRLMPVDALRIRGVHNALN 334

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L   + +    +L  L      P R  FV   S GG  Y++ +  +N +   + 
Sbjct: 335 ALAALQLARVLELGWGPMLRALRDYAGEPHRAAFV--RSIGGVDYINDSKGTN-VGATVA 391

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +  +  G+ +V+   G  + Q   P+   ++     + ++  D P       I   +  
Sbjct: 392 ALEGL--GQTVVLIAGGQGKGQDFSPLRSAVSRHARAVVLIGADGP------AIGQVLES 443

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +   +  EA+R A E+    + +++
Sbjct: 444 TGVALVVAADMREAVRRAAEIAQAGEAVLL 473


>gi|145633134|ref|ZP_01788866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145635587|ref|ZP_01791285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229844909|ref|ZP_04465047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
 gi|144986360|gb|EDJ92939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145267149|gb|EDK07155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229812290|gb|EEP47981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
          Length = 437

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 123/394 (31%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTVLKAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATILNVTEDHMDRYMDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N     +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---RLTFGENENQAKHTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+     + G R   D   T+    
Sbjct: 269 NYMNILAATALAQAIGINLDSIRAALRHFKGLDHRFQLAH-QANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     + +   G  +      +   I            D           A
Sbjct: 328 VAALAGLYIEGK--LHLLLGGDGKGANFSELAELINQPHIICYCFGRDG----------A 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +AI      L   D++++
Sbjct: 376 LLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|26246021|ref|NP_752060.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli CFT073]
 gi|218687965|ref|YP_002396177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ED1a]
 gi|227885007|ref|ZP_04002812.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300981125|ref|ZP_07175371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|301048480|ref|ZP_07195505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|30316043|sp|Q8FL65|MURD_ECOL6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|26106418|gb|AAN78604.1|AE016755_104 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           CFT073]
 gi|218425529|emb|CAR06312.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           ED1a]
 gi|227837836|gb|EEJ48302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300299666|gb|EFJ56051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|300409027|gb|EFJ92565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|307551932|gb|ADN44707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ABU 83972]
 gi|315294717|gb|EFU54060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 153-1]
 gi|324008323|gb|EGB77542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 57-2]
          Length = 438

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    +    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLATRVQPGDMVLL 410


>gi|313677377|ref|YP_004055373.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Marivirga
           tractuosa DSM 4126]
 gi|312944075|gb|ADR23265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marivirga
           tractuosa DSM 4126]
          Length = 455

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 146/395 (36%), Gaps = 57/395 (14%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A +++     +  N P++   +  +F        +G     I+A+TGT+GKS+       
Sbjct: 74  APNVEIVKKALGKNIPVI---DELEFA-------FGFTKGKIIAITGTNGKSTTTMLTYH 123

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + + +GLS   +G    I                       L         +E SS  +D
Sbjct: 124 LLKEAGLS---VGLGGNIG----------------KSMAGQLVDIDFDWWVLECSSFQID 164

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  K       N+  DH+D +    + Y  +K  LF+    KE  A++Y +D    
Sbjct: 165 --GFVNFKPHIAILLNITPDHLDRYDYKVENYVASKFSLFKNQ-GKEDFALLYTEDKLIH 221

Query: 255 EVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +  +  H    ++L        Y+G + +   +    +KQ+ T S +      L  + G+
Sbjct: 222 D-YQVKHPFSSKLLEFKFEDIPYEGAYANPSGIIVNLDKQRHTFSQD------LLTIKGK 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NA+ +        I +  + E L K   +  R E VG N  G     D   T+  +
Sbjct: 275 HNQTNAMASILTAKLTKIKNDKISESLPKFKSIQHRLESVG-NIHGIEFINDSKATN--V 331

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + +   +   T   I +V   G D+      +   ++ ++  I  +  DN      EKI+
Sbjct: 332 DAVYYALDAFTRPIIWIV--GGVDKGNDYSQLDA-VSTNVKAIICLGKDN------EKIK 382

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  P   E  +  +A+    ++   ++V+++
Sbjct: 383 EHFKSRCPIIEETQSMQDAVEMGYKLSKDREVVLL 417


>gi|293510628|ref|ZP_06669333.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M809]
 gi|291466519|gb|EFF09040.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 437

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 124/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +     D      +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGVGLPESDY-FAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+ +   I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKESDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|297544895|ref|YP_003677197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842670|gb|ADH61186.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 454

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 109/321 (33%), Gaps = 26/321 (8%)

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           S +    ++          +   L Y   +      + A         +   K       
Sbjct: 124 SLLGEMFKNAGRKVYVAGNIGYPLIYAVMEASEDAFIVAEISSFQLETIKEFKPKISCII 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH++ H+T + Y + K R+FE    +    ++  DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLNRHKTFENYRDIKGRIFENQ-RENEYTVLNFDDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +    +   V        V  + +         +PGE  + NAL A+ +    GI   
Sbjct: 240 SRKNSLENGAYVKNGSIYISVDKNAKKIIDIEEIYIPGEHNLENALAASSVAYLSGISVD 299

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           ++   L+    V  R EFV     G + Y D   T+   +  +K I+ +     IV+   
Sbjct: 300 VIANTLKTFKGVEHRIEFVD-EINGVKFYNDSKGTNP--DASIKAIQALKPP--IVLIAG 354

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---- 446
           G D+       +      +  + ++           +   +I      +    + I    
Sbjct: 355 GYDKGSEFDEFVKAFNGKVKKLILI----------GQTAKKIKDTAKKYYYPEDDILFAD 404

Query: 447 ---EAIRTAIEMLNKQDVLVV 464
              EA++ A E   + D +++
Sbjct: 405 TLEEAVKKAYESAKEGDSVLL 425


>gi|323339597|ref|ZP_08079871.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC
           25644]
 gi|323092992|gb|EFZ35590.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC
           25644]
          Length = 467

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 109/362 (30%), Gaps = 55/362 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG  +       D R          +  +  
Sbjct: 131 IGVAGAHGKTSTTGLLSHVLSGVSPTSYLIGDGT--GKGVPDARFFVFEADEYRRHFA-- 186

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                  G        TN+  DH DY    +   +A   L +  
Sbjct: 187 -----------------------GYHPDYTIMTNIDFDHPDYFTGIEDVCDAFQELADH- 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
              +    ++ +D + + +          V   G  +   +  + +          + + 
Sbjct: 223 --TKKALFVWGEDKHLQNI-----KVDIPVYRYGTEENDDVRAENIKRTTKGSSFDVYLH 275

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F  PL G+  V N+L    +     ID+  V   L     V  RF         
Sbjct: 276 DEFLGTFDIPLFGKHNVLNSLAVIAVSHLEKIDAEEVKRELLTFKGVKRRFSEKKVADM- 334

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  + +   +   R      +II VF                 +LDLAD   
Sbjct: 335 -VIIDDYAHHPSEIAATIDAARQQYPKKKIIAVFQPHTFSRTVALMDDFAKSLDLADKVY 393

Query: 415 VTDDNP--RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGK 467
           +T+     R ++ E    ++   I    E  +        ++ ++       DV++  G 
Sbjct: 394 LTEIFSSIREQNGEVSAKDLGEKISKGGEVLS--------LDNMSPLLDFHDDVVIFMGA 445

Query: 468 GH 469
           G 
Sbjct: 446 GD 447


>gi|301066756|ref|YP_003788779.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus casei str.
           Zhang]
 gi|300439163|gb|ADK18929.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus casei str.
           Zhang]
          Length = 436

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 112/372 (30%), Gaps = 53/372 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +         +S+ IG   T             +  Y    L+Y 
Sbjct: 106 IGVAGAHGKTSTTGLLAHTLSGVAKTSYLIG-DGTGKGIPDSKFFVFEADEYRRHFLAY- 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+   +  ++A    FE  
Sbjct: 164 -------------------------HPDYMIMTNIDFDHPDYYTGFEDVYDA----FETE 194

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV 295
             +   AI+ + DD + +++      A   V   G         + V    N        
Sbjct: 195 ANQVKKAIVAWGDDPWLRKL-----KAKVPVYYYGISDRDDFQARNVDRDTNGSSFDAYF 249

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             +    F  PL GE  V NAL    +     +D+ L+   L     V  RF        
Sbjct: 250 HDQLIGHFFVPLFGEHSVLNALAVVAVAHMEKLDAKLIARELGNFSGVKRRFAEKDLKDM 309

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH  N ++  L   R       II VF                  L  AD  
Sbjct: 310 --IIVDDYAHHPNEIKATLDAARQKYPDKAIIAVFQPHTFSRTQAYEPQYVQVLSQADQT 367

Query: 414 IVTDD-NPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +T   +   E   KIR  +I   I G        E ++  ++  N   V+V  G G   
Sbjct: 368 FLTPIFSSAREKTGKIRSEDITAQIKGAAVIHQ--EDMKPLLQYHNA--VVVFMGAGD-- 421

Query: 472 VHIVTNGEKKMS 483
              +   EK   
Sbjct: 422 ---IQKYEKAYE 430


>gi|171318508|ref|ZP_02907660.1| UDP-N-acetylmuramate [Burkholderia ambifaria MEX-5]
 gi|171096294|gb|EDT41200.1| UDP-N-acetylmuramate [Burkholderia ambifaria MEX-5]
          Length = 461

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 113/358 (31%), Gaps = 24/358 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     +      +   T S  ++ +A  Y
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL--IGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++                       +       NL  DH D      A    +      
Sbjct: 163 DTAFFDKRSKFVHY------------RPRTAVLNNLEFDHADIFPDLAAI-ETQFHHLVR 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     +        + V+ R       V   G  G +  L     +   ++  +  +
Sbjct: 210 TVPGVGRLVTNGRSDALERVLAR--GCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSQ 267

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +      + + G+    NAL A      +G+  A   E L     V  R E  G +  G
Sbjct: 268 SERVGAVAWQVQGDHNRMNALAAIATARHVGVPPAQAAESLASFRNVKRRMEVRG-SIDG 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
             +Y D+AH   ++E  +  +R         I+              +  ++   LAD  
Sbjct: 327 VTVYDDFAHHPTAIETTIAGLRARIGRQNSRILAVLEPRSNTMKLGVMKAQLPTSLADAD 386

Query: 413 AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +     P   D     +   +           +    +++ +E     D ++V   G
Sbjct: 387 LVFGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARAGDHVLVMSNG 444


>gi|261886110|ref|ZP_06010149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 277

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 51/293 (17%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ +S+  ++G  F  +  N      F   AI  GA  I             T +    I
Sbjct: 11  ITDNSKTCESGCFF--LKSNSN--AKFENDAIKSGAIII-------------TPKRAKTI 53

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L +D+                   ++ +TGT+GK++ A  +    +  G     +G + T
Sbjct: 54  LNLDD----------------GIRLIGITGTNGKTTTAFAIAFGLRSLGYK---VGISGT 94

Query: 153 ISSFAQDNRLTTPS--PIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKLIAG 207
             +F  D ++         + + LSY+      G  +  +E SSH + Q+R++G+     
Sbjct: 95  RGAFICDQQIADQGLTSCQILETLSYIKQAKESGCRYFVMEVSSHAIAQNRIEGLNSALK 154

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTN+ +DH+DYH++   Y   +   F++    +SP +I  DD   +   K       + 
Sbjct: 155 VFTNVSQDHLDYHKSCSEYARVESSFFDD----DSPKLISGDDESIRFNHKNTMIYWLK- 209

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                        +        +  I  + +  +    L G+F +YN L A G
Sbjct: 210 -----NSDASFFVENYDFKGGIKANIKSKNETANLQSHLQGKFNLYNLLAAIG 257


>gi|296875958|ref|ZP_06900017.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296433033|gb|EFH18821.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 444

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 103/346 (29%), Gaps = 39/346 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVAS 131
                L   +A    N   +   +             G+   + +++   G  GK+S   
Sbjct: 60  EGDKILIAGNAFRPDNNVEIAYADEHGLTYKRYHEFLGEFMRDFVSMGVAGAHGKTSTTG 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +      +S+ IG  +   S A    +                         E   
Sbjct: 120 MLSHVLSNITDTSYLIGDGTGRGSAAAKYFVFESD---------------------EYER 158

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H +  H            TN+  DH DY  + +  FNA     +++        IY +D 
Sbjct: 159 HFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI---SKGLFIYGED- 208

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
             KE+ +   +A         +        +          +   G+D   F  P  G  
Sbjct: 209 --KELRRITSSAPIYYYGFDKENNDFVASNLLRSTTGSTFNVHFRGEDLGQFHIPTFGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA    GL    G D  LV EHL+    V  RF     N  G  I  D+AH    + 
Sbjct: 267 NIMNATAVIGLLHIAGFDLNLVREHLKTFAGVKRRFTEKVVN--GTVIIDDFAHHPTEII 324

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             L   R    S  I+ +F                 AL+ AD   +
Sbjct: 325 ATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVYL 370


>gi|1165288|gb|AAA85627.1| MurF [Borrelia burgdorferi]
          Length = 397

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 117/356 (32%), Gaps = 27/356 (7%)

Query: 67  GAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           G +    S  +  +             L+  N  K L   AS L  K     +A+TG++G
Sbjct: 3   GVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNG 62

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I  +      +     T  +   D              L    ++     
Sbjct: 63  KTTTKEMLYSILSK------KYKTYKTWGNLNSDIG-------LPLSILRVEGNEEYAVF 109

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            V  S  G        +K      TN+   H+   +  QA    K ++  + +      +
Sbjct: 110 EVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIE---IFV 166

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +   + Y   + KRA  A   V  V +  + + +K    +  K       +G  F++   
Sbjct: 167 VNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLDGKFSFDFVYKG--FEYSIL 224

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           L G   ++NA+    L + +G+    + E L +     GR E +  N  G  I  D Y  
Sbjct: 225 LLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKN--GYLILNDSYNG 282

Query: 365 TSNSLEMILKNIRTIT-SGRIIVVFGC----GGDRDQGKRPIMGKIALDLADIAIV 415
              S   +   I  +    +  +V G     G    +  + ++ +      D   +
Sbjct: 283 NMGSFMALKNMILDLNIQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFL 338


>gi|82751329|ref|YP_417070.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           RF122]
 gi|82656860|emb|CAI81289.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus RF122]
          Length = 412

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 122/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 79  VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 136

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 137 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 167

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD +  ++      A   +   G+     I+ + +          + V
Sbjct: 168 AHNVKKGIIAWGDDEHLCKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 222

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 223 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 282

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 283 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 340

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 341 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLF 389

Query: 465 AGKGH 469
            G G 
Sbjct: 390 MGAGD 394


>gi|313637657|gb|EFS03043.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria seeligeri FSL
           S4-171]
          Length = 350

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 125/358 (34%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +      +S+ IG  +   +                      
Sbjct: 7   IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGT---------------------- 44

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  + ++EA  +   +H L   K      TN+  DH DY ++    FNA    FE L
Sbjct: 45  --KGAEYFALEACEYQ--RHFLAY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 95

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+    D    E+ K   +        G + +F   K V       +  +    
Sbjct: 96  GKQVKKAVFALGDDV--ELRKLTLDIPIIYFGFGEENEFQ-AKNVIKETTGTRFDVYHRD 152

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    F  P  G+  V NAL    LC   G+    V   L+    V  RF    T+    
Sbjct: 153 EFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVKRRFSI--TDKGNQ 210

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH  + +   +   R      +I+ VF                 +L+LAD   +
Sbjct: 211 VLVDDYAHHPSEIRATVNAARQKYPDKKIVAVFQPHTFTRTRTFLQGFADSLNLADEVYL 270

Query: 416 TDD--NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D   + R +      A++ H   G   I++ +  E ++          V++  G G 
Sbjct: 271 CDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PDAVILFMGAGD 322


>gi|71281117|ref|YP_268602.1| mur ligase family protein [Colwellia psychrerythraea 34H]
 gi|71146857|gb|AAZ27330.1| mur ligase family protein [Colwellia psychrerythraea 34H]
          Length = 584

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 137/408 (33%), Gaps = 51/408 (12%)

Query: 101 FLSLFASRLYGKHPENILAV-TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
            L   ++  + ++    LA  TGT+GKS+    + QI +++G      G TST      D
Sbjct: 166 ALPEVSTINWSQYKSIPLAYVTGTNGKSTSVRIMSQIIKQAGK---CCGVTSTDFIRVGD 222

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N +          A   L         +E +  G+ +  L    + A   TN+  DH+  
Sbjct: 223 NIIDHGDYSGPGGARMLLRHPDTETAILEVARGGILRRGLPIDNVDAALITNIAEDHLGQ 282

Query: 220 HQ--TQQAYFNAKMRLFEELLP------------KESPAIIYADDAYSKEVMKRAHNAGC 265
           +   T  A   AK  + + LLP             +   ++ ADD     ++  A     
Sbjct: 283 YGINTVSALAQAKAVVAKGLLPNLEDKGQEHNRQDKGRLVLNADDE---NLVVLAPEIPV 339

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQV--------------TISVEGKDFDFLFPLPGEFQ 311
                        L++                        ++ +   D            
Sbjct: 340 TKSWFSLHEDNATLQQHKQKGGAVCFVREQHLVYSVGNEESVIIAVNDIPMTLNGAALHN 399

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSN 367
           + NAL A  L   + +++  +   L          PGR       S    + +D+AH  +
Sbjct: 400 IQNALGAIALAKCLNVENEAIKIALSNFASNVEDNPGRGNHFTVKS--AEVIMDFAHNVH 457

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD---NPRSED 424
           S+E +      + + R  ++    GDR   +   M K AL +    IV  +     R   
Sbjct: 458 SMEAMAVTTANMKAQRKFLMLSHAGDRTDNEIINMTKTALKMKPDFIVAAELVPYLRGRT 517

Query: 425 PEKIRAEIIHGIPGF-IEKGNRIEA------IRTAIEMLNKQDVLVVA 465
             +I   I+     + +++ +   A          +E L ++D+ ++ 
Sbjct: 518 LGEIPQLIVDTALAYGMKRSDIYIADSPFKGANYIVEQLREKDLALLM 565


>gi|260063711|ref|YP_003196791.1| UDP-N-acetylmuramate--L-alanine ligase [Robiginitalea biformata
           HTCC2501]
 gi|88783156|gb|EAR14329.1| UDP-N-acetylmuramate--L-alanine ligase [Robiginitalea biformata
           HTCC2501]
          Length = 432

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 113/358 (31%), Gaps = 46/358 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ + A                 V   + + L + +           LAV GT GK++ +
Sbjct: 57  VIYTPAVPATHSELAFFRKGGYEVAKRS-QVLGMISRA------SRCLAVAGTHGKTTTS 109

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + + +GL        + +   ++D               S    +G     VEA 
Sbjct: 110 CILAHLLREAGLE-----VMAFLGGVSEDFG-------------SNFLMEGTEFSVVEAD 151

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
               D+  L  ++      T++  DH+D +    A   A    F   +      ++    
Sbjct: 152 E--YDRSFLY-LEPDIACVTSMDADHLDIYGD-DATLKATFGEFAAKVRPGGVLVVRNGL 207

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
                            L+ G      + ++ +       +  I    + F+   F  PG
Sbjct: 208 PLEG-------------LTYGIDDDAAYSIRNLRTEDGAYRFDIHTPTRVFESVRFSKPG 254

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N L A  + + +      +++ +     V  RF +     +G     DYAH    
Sbjct: 255 RHNLLNGLAAFTMAVQVAEQPDRLVKAMGSFKGVERRFSYKIKTEQGI-FIDDYAHHPTE 313

Query: 369 LEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++ +   IR +  G+ I+ VF                 +L   D   + +  P  EDP
Sbjct: 314 IDAVCDAIREMHPGKDILAVFQPHLFSRTRDFGPEFARSLSRFDTIWLLEIYPAREDP 371


>gi|257455148|ref|ZP_05620386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
 gi|257447481|gb|EEV22486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
          Length = 477

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 118/367 (32%), Gaps = 17/367 (4%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLA 171
              ++LAV GT GK++  + +  I   +G+ +   IG    + +  +  +       YL 
Sbjct: 101 QYRHVLAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVDTPDERLKKAFAHSSYLG 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              +    +G   +  +         R   +  +       NL  DH D      A    
Sbjct: 161 SD-TTADHEGYFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFPNLAAI-QT 218

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           +      ++P     I+ AD    +E +K+         ++         +      +  
Sbjct: 219 QFHHMVRMIPSNGKIIMPADTESLEETLKKGCWTPIWRTAIASTNPHADWQAKLMKQDGS 278

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q  +  +G      + + G   V N LVA      IG+  A   E L     +  R E V
Sbjct: 279 QYEVMFDGHKGQVHWQMSGLHSVNNGLVAIAAAYNIGVSVAQACEALSNFAGIKRRMELV 338

Query: 350 GTNSRGGR---IYVDYAHTSNSLEMILKNIR----TITSGRIIVVFGCG-GDRDQGKRPI 401
           GT    G+   +Y D+AH   ++E  L   +         +I  V          G    
Sbjct: 339 GTIDNHGKHIEVYDDFAHHPTAIETTLDGAKKRFADNPKRKIWAVIEPRSNTMKLGTHQG 398

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +   +  +AD  I     P + D     A+ I          +    I      +   D 
Sbjct: 399 LLAPSASIADQVI--WYQPANLDWS--VADAIGNAANQQVMTSTDAIIEHIAAHIGDDDA 454

Query: 462 LVVAGKG 468
           ++V   G
Sbjct: 455 VIVMSNG 461


>gi|154494015|ref|ZP_02033335.1| hypothetical protein PARMER_03360 [Parabacteroides merdae ATCC
           43184]
 gi|154086275|gb|EDN85320.1| hypothetical protein PARMER_03360 [Parabacteroides merdae ATCC
           43184]
          Length = 476

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 126/417 (30%), Gaps = 49/417 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V + A                 V+   R  L        G      L V GT GK++ +
Sbjct: 75  VVYTPAVPEDHSELCYFRGNGFEVMKRAR-VLGEITGCNRG------LCVAGTHGKTTTS 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  + ++S      +   + +    ++               + + S       +EA 
Sbjct: 128 SMVAHLLKQS-----HVDCNAFLGGILKNYDS------------NLMLSDKSDLTVIEAD 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H L   K      T    DH+D + T +AY  +    F  L+  +   ++    
Sbjct: 171 EFDRSFHWL---KPYMAVITAADPDHLDIYGTPEAYRES-FEHFTSLIRPDGCLLMKQSI 226

Query: 251 AYSKEVMKRAH---------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF- 300
             +  + +                   +                    ++     G D  
Sbjct: 227 NVTPRLQEGVKFYTYTGAFDAKELSTFNFQLSTGSPDFYAENVRIGGGEIFFDFVGPDVR 286

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    +P +  + N + A  L    G+    +   +        RF+F         +
Sbjct: 287 IPDIQLGVPVKVNIENGVAAIALAWLNGVTPEEIKHGMATFAGPRRRFDF-HLKKENIVL 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DYAH    L+  + +++ + +GR +  +F                 +L L D  I+ D
Sbjct: 346 IDDYAHHPAELKASILSVKELYAGRKVTGIFQPHLYTRTRDFAADFAASLSLLDELILLD 405

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAI-EMLNKQDVLVVAGKGH 469
             P  E+P  I       I   +   +    R E +   +     K +V+++ G G+
Sbjct: 406 IYPAREEP--IPGVTSQIIFDAVTIADKRLIRKEELLDVVAAEAGKFEVVLMVGAGN 460


>gi|116052448|ref|YP_792760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115587669|gb|ABJ13684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 448

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 116/350 (33%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ KS+V + V ++   +       G   T +                    
Sbjct: 109 APIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +  +    +E SS  L+    D +     +  N+  DH+D +     Y  AK R+F
Sbjct: 149 LDLLADDIELYVLELSSFQLE--TCDRLNAEVATVLNVSEDHMDRYDGMADYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA ++ ++           S            +     ++ +   
Sbjct: 207 RG----ARQVVVNRADALTRPLIAD----TVPCWSFDLNKPDFKAFGLIEEDGQKWLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L+    +  R ++V    +
Sbjct: 259 FDKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQWV-RERQ 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G   Y D   T+    +             +V+   G  +      +   +A     + +
Sbjct: 318 GVSYYDDSKATNVGAALAAIEGLGADIDGKLVLLAGGDGKGADFHDLREPVARFCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 378 L------GRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|168206854|ref|ZP_02632859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens E str. JGS1987]
 gi|170661761|gb|EDT14444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens E str. JGS1987]
          Length = 458

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 135/400 (33%), Gaps = 58/400 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +  F     G     +  VTG+ GK++  + V ++  + G  ++  G   T         
Sbjct: 108 MEEFVRYCKG----KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTP-------- 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L   +  +  +    V +E SS  L       +++     TN+  +H+D H+
Sbjct: 156 --------LFSNIEEIKEE--DKVVLELSSFQLMTM---DVEIDVAIVTNITPNHLDMHK 202

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             Q Y  AK  +F+    +    +I  ++  +K + K A     R  S   +G+  + K 
Sbjct: 203 DMQEYIYAKKNVFKYQ-RENDLLVINDENEITKNLDKEAKGKVVRFSSKKTKGEDAYYKD 261

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      + V GK+      +  +    V N L A        +    + +  E  
Sbjct: 262 ---------GKLYVHGKEVCKKDNIIIKGMHNVENYLAAFLAVYDE-VSIESMKKVAETF 311

Query: 340 HVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V  R EF+     G + Y D  A T       LK          +++   G D+    
Sbjct: 312 GGVHHRCEFI-REVDGVKYYNDSIASTPTRTLAGLKAFEK-----PVILLAGGYDKHVPF 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKG-NRIEAIRTA 452
            P+  +    +  I +           EKI+A     E   GI   +  G +  E +  A
Sbjct: 366 EPLAYEGYEKIKAIVLF------GVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIA 419

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             +    D++        +  +  N E +     +I+  I
Sbjct: 420 KSIAENGDII-TLSPACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|99080520|ref|YP_612674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
 gi|118595693|sp|Q1GIV4|MURD_SILST RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|99036800|gb|ABF63412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
          Length = 467

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 141/418 (33%), Gaps = 56/418 (13%)

Query: 65  AQGA----EAIVVSSAYSL------QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            QGA     A++VS   +           A + +  P  V ++   F    A+  + +  
Sbjct: 60  KQGAFDGISALIVSPGIAHLYPKPNPVIRAALVAGVP--VDNDIGLFFRSVATSEWDEFD 117

Query: 115 --ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AVTG++GKS+  + +  I +  G +S   G                        
Sbjct: 118 TAPKVIAVTGSNGKSTTVALLHHILEHVGRNSQMAGNIG-------------------RG 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L          V +E SS+  D  R   +      FTNL  DH+D H     YF AK R
Sbjct: 159 VLDIDPPVDGGVVVLELSSYQTDLAR--ALTPDVAVFTNLTPDHLDRHAGMGGYFAAKRR 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF E  P  +   +  D+            +  RV+ +  + K            K  ++
Sbjct: 217 LFAEGGPDRAVIGVDEDEGLFLAGQLSEGESDDRVIRISARQKLSGGAGWTVFARKGFLS 276

Query: 293 ISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +G+     D   +  LPG     NA  A      +G+   ++   +     +P R +
Sbjct: 277 EYRKGRQAGSIDLRDIPGLPGAHNHQNACAAYAAARTLGLAPRVIEAAMRTYPGLPHRSQ 336

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +        +    A   +S    L   + I     I     G +++ G   + G    
Sbjct: 337 RIAEADGVSYVNDSKATNVDSAAKALSAFKNIR---WIC---GGLEKEGGLEALKGAT-D 389

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D+    ++  +  +      + AE+   +          +A+  A+      + +++A
Sbjct: 390 DVLKAYVIGREAAQFAMQLDVEAEVCTTM---------AQAVSRAMAEAGPGETVLLA 438


>gi|89093868|ref|ZP_01166813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanospirillum sp. MED92]
 gi|89081754|gb|EAR60981.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanospirillum sp. MED92]
          Length = 443

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 105/305 (34%), Gaps = 21/305 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             + +LAV+GT GK++ ++ +  I + +G+    +     +      +     SP ++ +
Sbjct: 89  QDKWVLAVSGTHGKTTTSTMLAWILEHAGMQPGFL--IGGVPLNFGISARVGESPFFVIE 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y ++                               NL  DH D      A    +  
Sbjct: 147 ADEYDTAFFDKRSKFVHYH------------PRTLVMNNLEYDHADIFPDLAAIQR-QFH 193

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               ++P     I+   ++   EV++    A   V+    Q      +      + +   
Sbjct: 194 HVVRIVPGNGQIILPQGESALDEVLEM--GAWSPVVRTSLQNDDCEWQARLLSEDGRCFE 251

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G       + + G+  V N L+A      +G+     +E L +   V  R E +G 
Sbjct: 252 VLHQGAVQGVVNWSMTGKHSVNNGLIAIAAARNVGVQPVHAIEALNEFGGVKRRMELLG- 310

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
              G ++Y D+AH   ++E  L+ IR       +V                G +A  ++ 
Sbjct: 311 EVDGIKVYDDFAHHPTAIETTLEGIRAQVGEAKVVAVIEPRSNTMRLGTHQGMLADSVNQ 370

Query: 410 ADIAI 414
           AD   
Sbjct: 371 ADQVF 375


>gi|221141545|ref|ZP_03566038.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|269941218|emb|CBI49606.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|302751566|gb|ADL65743.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|329314414|gb|AEB88827.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 437

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 124/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +  +       + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQIMDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVILF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 MGAGD 419


>gi|229541201|ref|ZP_04430261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus coagulans
           36D1]
 gi|229325621|gb|EEN91296.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus coagulans
           36D1]
          Length = 451

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 102/310 (32%), Gaps = 21/310 (6%)

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F  D  L       + K  S ++ +      +           +   +      TN+   
Sbjct: 134 FQADPHLDPLIAGNIGKVASTVAQRARADQQMVVELSSFQLMGVQTFRPHIAIITNIYEA 193

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+DYH T++AY  AK  +      ++   I+        +++           +  Y   
Sbjct: 194 HLDYHGTKEAYAKAKSNI-TRNQTEDDFLILNHAQPELWDLVSFTKAKIIPFSTKEYVED 252

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              +K    +   +++    +         LPG+  + N L A      +G  +  +   
Sbjct: 253 GASVKDGSIMWKGEKIMDRAD-------IVLPGDHNLENILAAVAAAKLMGASNDAISGV 305

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           L     V  R +++G   +G + Y D  A    + +  L           +++   G DR
Sbjct: 306 LGTFKGVKHRTQYIG-EIKGRKFYNDSKATNILACKAALAAFHQ-----PVILLAGGLDR 359

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             G   ++  +    A +    +  P+ E   K       GIP      N  EA+  A  
Sbjct: 360 GNGFDELIPALKYVKA-LITFGETAPKLESTAK-----KAGIPVIRTVENVEEAVPVAWA 413

Query: 455 MLNKQDVLVV 464
           +    D +++
Sbjct: 414 LSEPGDCILL 423


>gi|320547396|ref|ZP_08041684.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus equinus ATCC
           9812]
 gi|320447941|gb|EFW88696.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus equinus ATCC
           9812]
          Length = 443

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 94/301 (31%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +  + +    +S+ IG  +   S   +  +               
Sbjct: 106 FGVAGAHGKTSTTGLMAHVLKNITDTSYLIGDGTGRGSANSNYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY ++    F+A     +++
Sbjct: 155 ----------EYQRHFMPYH------PEYSIITNIDFDHPDYFKSIDDVFDAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD Y +++   A      +   G+          V    N     +   
Sbjct: 199 ---QKALFLFGDDPYLRKITSDAA-----IYYYGFNDTDDFIAYDVVRTTNGSAFKVKHG 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++   F  P  G   + NA          GID  LV EH++    V  RF     N+  
Sbjct: 251 DEELGTFHLPAFGRHNILNATAVIANLYVAGIDMELVAEHMKTFAGVKRRFTEKVINN-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  II VF                 AL+ AD   
Sbjct: 309 TTIIDDFAHHPTEIIATLDAARQKYPSKEIIAVFQPHTFTRTIALLDEFAQALNQADAVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|331671607|ref|ZP_08372405.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
 gi|331071452|gb|EGI42809.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
          Length = 438

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKICVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLYLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|229817320|ref|ZP_04447602.1| hypothetical protein BIFANG_02581 [Bifidobacterium angulatum DSM
           20098]
 gi|229785109|gb|EEP21223.1| hypothetical protein BIFANG_02581 [Bifidobacterium angulatum DSM
           20098]
          Length = 518

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 136/423 (32%), Gaps = 60/423 (14%)

Query: 82  FSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V    R         + A  + G      + V G  GK++ +S +  +
Sbjct: 101 YSSAIKPSNPEIVAAAQRGARIVHRSDILALLMNG---CRAVTVAGAHGKTTTSSMLSHV 157

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             ++G             S+A    +       L           V    V  +      
Sbjct: 158 LVQTGKDP----------SYAIGGSIQGADGSTLDGG-------HVGAGDVLVAEADESD 200

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              D  +      TN   DH+D++  +  Y  A               ++ ADDA +  V
Sbjct: 201 GSFDKYRPQIAIITNCEADHLDHYGDEAHYRAA---FVRHASHAVGHVVLCADDADALAV 257

Query: 257 MKRAHNAGC-RVLSVGYQ---------GKFIHL--KKVCAIHNKQQVTISVEG------- 297
           +         + ++ G             ++H+  ++  A    ++ T+ +         
Sbjct: 258 LDAMPAEVASKAVAYGTADPNGLNLNGAAYVHIVSEQESAGSGVERFTLRMPAGIAGDQP 317

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +D      +PG     NA  A    + +G+D+    + +        RF+  GT  +   
Sbjct: 318 RDIPVELSVPGVHNARNAAAALTAAMLLGVDADEAAKSITGFLGAARRFQVRGTVKQ-VT 376

Query: 358 IYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DYAH    +  +L    R      I V+F                 AL  AD  IVT
Sbjct: 377 VVDDYAHHPTEIAALLDAARRRYPESTIRVLFQPHLFSRTKFFAHEFAEALAKADDVIVT 436

Query: 417 DDNPRSED--------PEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              P  E         P  I  E   G+ G  F  + +   A +  +   +  DV+   G
Sbjct: 437 GVFPAREKQEDFPGVGPLSIVRE-AKGMQGVEFSAQEDMRVAAQMMVMRAHHGDVIFTVG 495

Query: 467 KGH 469
            G 
Sbjct: 496 AGD 498


>gi|218780973|ref|YP_002432291.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
 gi|254766048|sp|B8FBS0|MURD_DESAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218762357|gb|ACL04823.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 450

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 143/424 (33%), Gaps = 49/424 (11%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ IV+S      +    A      P++            ASR        I+AVTGT+G
Sbjct: 69  ADLIVISPGVPHTIPVLEAAREKGVPVIGE-------VELASRFIQ---APIIAVTGTNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V S + ++ + SG+S+F  G                                    V
Sbjct: 119 KTTVTSLIGEMMEASGISAFVGGNIGNPLVNYAKG------------------EDKAQVV 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SS  LD   ++         TN+  DH+D +   + Y  +K R+F      +  AI
Sbjct: 161 VAEISSFQLD--TIESFAPKVALLTNVTEDHMDRYDGMEGYAASKARVFMNQTGAD-FAI 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +   D +S+ +                + +      + A                     
Sbjct: 218 LNGCDKWSRAM---CGGIKASQWFFTGREEAEAGIAMNAGAMDFFTGAQKHWSLSLKKMT 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GE    NA  AA    A G     +   ++    +P R EFV       + Y D   T
Sbjct: 275 LSGEHNKENAAAAALAAYAAGASVEGIQGAIDAFKGLPHRLEFV-REVMDVKYYDDSKAT 333

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +  ++ +L+ +    +   +++   G D+    R +   +    A    VT       + 
Sbjct: 334 N--VDAVLRALEGFNAPVHLIM--GGRDKGGHFRDLK-DMVEQKAARLYVTG------EA 382

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             I    + G    ++ G   +A+  A       +V+V++  G  +     N +++    
Sbjct: 383 AGIITSALSGSVEVVQAGTIEKAVEFAKRAARPGEVVVLS-PGCASFDQYKNYKERGKDF 441

Query: 486 CDII 489
           C ++
Sbjct: 442 CRVV 445


>gi|56412398|ref|YP_149473.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|167550679|ref|ZP_02344436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168234890|ref|ZP_02659948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168262189|ref|ZP_02684162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464322|ref|ZP_02698225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820880|ref|ZP_02832880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442341|ref|YP_002039358.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194736856|ref|YP_002113144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197361334|ref|YP_002140969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|200387467|ref|ZP_03214079.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926704|ref|ZP_03217906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238911183|ref|ZP_04655020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|62900669|sp|Q5PDC2|MURD_SALPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56126655|gb|AAV76161.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194401004|gb|ACF61226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194712358|gb|ACF91579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633046|gb|EDX51500.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197092809|emb|CAR58235.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197291916|gb|EDY31266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199604565|gb|EDZ03110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323369|gb|EDZ08564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205324366|gb|EDZ12205.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205342390|gb|EDZ29154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348968|gb|EDZ35599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320084369|emb|CBY94162.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322615947|gb|EFY12864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322620731|gb|EFY17591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623917|gb|EFY20754.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627365|gb|EFY24156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630672|gb|EFY27436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638108|gb|EFY34809.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640594|gb|EFY37245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647735|gb|EFY44220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648084|gb|EFY44551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656884|gb|EFY53170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657406|gb|EFY53678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322663725|gb|EFY59925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666558|gb|EFY62736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672283|gb|EFY68395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676405|gb|EFY72476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322679502|gb|EFY75547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322686169|gb|EFY82153.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195013|gb|EFZ80199.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323200078|gb|EFZ85165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201101|gb|EFZ86170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323209498|gb|EFZ94431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212250|gb|EFZ97074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216555|gb|EGA01281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219904|gb|EGA04382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225816|gb|EGA10036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228642|gb|EGA12771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236744|gb|EGA20820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239755|gb|EGA23802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242197|gb|EGA26226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249379|gb|EGA33295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252288|gb|EGA36139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256622|gb|EGA40352.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262991|gb|EGA46541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265476|gb|EGA48972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271736|gb|EGA55154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 438

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDADRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E    K    ++
Sbjct: 158 ELSSFQLE--TTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE----KAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGVNMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLTGDRIRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAQ------QTETMEEAMRLLAPRVQPGDMVLL 410


>gi|300715069|ref|YP_003739872.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia billingiae Eb661]
 gi|299060905|emb|CAX58012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia billingiae Eb661]
          Length = 451

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 118/362 (32%), Gaps = 36/362 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I Q  GL    +     +      +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMAAWILQACGLEPGFV--IGGVPGNFDVSATLGKSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQRQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   ++   D   K+VM  A        +VG  G   H +      +  +  + 
Sbjct: 209 -RIVPGQGKILMPDHDVNIKQVM--AMGCWSEQETVGDSG---HWQAKKLTPDASRWEVW 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+   +  + L GE  ++N ++A      +GI        L        R E  G  +
Sbjct: 263 LDGERVAEVNWALVGEHNMHNGMMAIAAARHVGIKPEDAGLALNDFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
            G ++Y D+AH   ++   +  +R+   G  RI+ V          G        AL  A
Sbjct: 322 NGVKVYDDFAHHPTAILATMTALRSKVGGTARILAVLEPRSNTMKMGISKDDLAPALARA 381

Query: 411 DIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAG 466
           D   +         P  I    +E+            +    +   +++    D ++V  
Sbjct: 382 DEVFLLQ-------PHHIPWQVSEVAEACSQPAHWSPDVDVLVEMIVKVAQPGDTILVMS 434

Query: 467 KG 468
            G
Sbjct: 435 NG 436


>gi|323975748|gb|EGB70844.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TW10509]
          Length = 438

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|257885178|ref|ZP_05664831.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
 gi|257821030|gb|EEV48164.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
          Length = 453

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 108/281 (38%), Gaps = 26/281 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TN+   HIDYH T++ Y  AK  L + +  K+   + 
Sbjct: 168 MELSSFQLM--GITDFRPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+ + A     RVL    +      + +         +I  + +    +  L
Sbjct: 226 WN----QSELQELAQRTKARVLPFSTK------EVLEGGVYADDYSIYYKKEKIMEISEL 275

Query: 307 --PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-A 363
             PG+  V NAL A  +    GI +  + E L   H VP R ++VG   +G + Y D  A
Sbjct: 276 GVPGKHNVENALAAISVAKLYGISNEAIRETLNLFHGVPHRTQYVG-EIQGRKFYNDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + +M L    T      +V+   G DR      ++  +    A + +      +  
Sbjct: 335 TNILATKMALSGFET----SKVVLLAGGLDRGNTFDELIPSLKGIKA-MVVFGQTKEKLM 389

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  K       GI   +   +  +A+  A+E     DV+++
Sbjct: 390 DAGK-----KAGIETIVTADSVEQAVPLALENSTDGDVVLL 425


>gi|219558136|ref|ZP_03537212.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T17]
          Length = 268

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 71/230 (30%), Gaps = 15/230 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+SGK+S    +  +    G      G  +            T    YL   ++ 
Sbjct: 54  IIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA- 112

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A  HG      +      G   N+G  H+    +++     K  L  +
Sbjct: 113 ------------ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-PQ 159

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     ++ ADD     + K       RV S    G             + + T+   
Sbjct: 160 AVPHSGAVVLNADDPAVAAMAKLTAARVVRV-SRDNTGDVWAGPVSLDELARPRFTLHAH 218

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +    + G+ QV NAL AA + +  G     V   L     V    
Sbjct: 219 DAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHR 268


>gi|312901615|ref|ZP_07760886.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
 gi|311291303|gb|EFQ69859.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
          Length = 306

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 119/297 (40%), Gaps = 14/297 (4%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +  +    +      H  +   L  + +    + T +G  H++   ++     AKM + +
Sbjct: 1   MPDETEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVD 60

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L  K+    + +D+   + ++++      +V++ G+  +   L+ +     K+Q +  +
Sbjct: 61  GL-AKDGSLFVPSDEPLLEPLVEKVTQ---QVITFGFSQESQ-LQGIVTNEAKEQTSFKI 115

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F  P+PG + V NAL+A G+     +  + + + L    +   R E++   + G
Sbjct: 116 SDTQMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANG 174

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I  D Y     ++ ++L +   ++  G+ I V G   +       +   +A  LA  A
Sbjct: 175 AEILSDVYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDA 234

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I  +      +   +  ++            +K  + E I    ++L  +D++V+ G
Sbjct: 235 I-EEVFLYGSEMAYLADKLQETYASANIHSFKKEEKNELIEAVKKVLQPEDMVVLKG 290


>gi|161870032|ref|YP_001599201.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Neisseria meningitidis 053442]
 gi|161595585|gb|ABX73245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Neisseria meningitidis 053442]
          Length = 458

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 118/370 (31%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL         G+D     E L     
Sbjct: 265 A----DGSFDVLLDGKKAGHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 321 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 379

Query: 402 MGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
              +  +L  AD            D     AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPESLKEADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNART 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|328946830|gb|EGG40967.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus sanguinis
           SK1087]
          Length = 444

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 104/347 (29%), Gaps = 39/347 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVA 130
           +   + +   +A    N   +   +             G    + +++   G  GK+S  
Sbjct: 59  IQPDFEIIAGNAFRPDNNVEIAYADANGIGYKRYHEFLGSFMRDFVSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGSANAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              + +     NA         +G       +    +     +S  G++  +F  P  G 
Sbjct: 209 EQLRRI---TSNAPIYYYGFKEEGNDFVAHDLLRSTSGSGFKVSFRGQELGEFQIPSFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G+D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGLDLNLVREHLKTFGGVKRRFTEKIVNE--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L        S  I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAAHQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADSVYL 370


>gi|222112151|ref|YP_002554415.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Acidovorax
           ebreus TPSY]
 gi|221731595|gb|ACM34415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax ebreus
           TPSY]
          Length = 632

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 150/406 (36%), Gaps = 56/406 (13%)

Query: 90  TPILVVDNTRKF-----LSLFASRLY-----GKHPENILAVTGTSGKSSVASFVQQICQR 139
            P+++    R+      L L+A  L        +   +LA+TGT+GK++V S    + + 
Sbjct: 212 APVVIAARARQISVEGELGLYAQALRELRAGQGYAPAVLAITGTNGKTTVTSLTGLLVEC 271

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +       G    I     D          L +              +E SS  LD   +
Sbjct: 272 ADKRVAVAG---NIGPTLLDTLAQHIDAGTLPE-----------VWVLELSSFQLD--GV 315

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---------------LLP----- 239
            G +  A +  N+ +DH+D+H + QAY  AK R+F E               LLP     
Sbjct: 316 QGFEPTAAAVLNITQDHLDWHGSLQAYAQAKGRIFGETGLMVLNREDAEVMALLPPPVRV 375

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           K     + A   +  ++ +R  + G  V+S + +  +     +       Q   + ++  
Sbjct: 376 KLQKPQLRAHVTFGGDMPQRPGDFGIEVVSGMAWLVRAHEADETAKRGKAQDAELHIQRL 435

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G     NAL A  L  A G   A +L  L +    P R E VG        
Sbjct: 436 MPADALRIRGRHNAINALAALALAQAAGCPLAPMLYGLREYRGEPHRVEPVGIVREVE-- 493

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y D +  +N +   +  +  + + R +VV   G  + Q   P+   +A     + ++  D
Sbjct: 494 YFDDSKGTN-VGATVAALTGLGADRRLVVILGGDGKGQDFSPLAAPVARYARAVVLIGRD 552

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            P      +IRA +        +     EA++ A +  +  D +++
Sbjct: 553 AP------QIRAALQGCGVPLQDAATLPEAVQLATQRAHVGDAVLL 592


>gi|167758768|ref|ZP_02430895.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
 gi|167663508|gb|EDS07638.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
          Length = 450

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 102/278 (36%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  N   DH++ H T +AY NAK  +     P++   I+ 
Sbjct: 164 EMSSFQLES--IVDFRPKVSAILNFTPDHLNRHHTMEAYVNAKKNIARNQGPQD-YCILN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  ++E  K+         S     K I+L+    I+   +  +SV   D      L 
Sbjct: 221 YEDGLTREFGKKVKAQVLYFSSQRKLEKGIYLEDGNIIYRDGE-EVSVCRVD---ELQLL 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  +    G+    + + +++   V  R E+V   +             +
Sbjct: 277 GTHNYENVMAAVAMAYVYGVPMETIRKSIKEFKGVEHRIEYVTEKNGVAYYNDSKGTNPD 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++ +   T     V+ G G D+D      +      +  + ++          EK
Sbjct: 337 AAIKGIQAMNRPT-----VLIGGGYDKDSAYTDWIESFDGKVKKLVLL------GATKEK 385

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I  +    G   ++      EA+ TA ++    D +++
Sbjct: 386 IAKDANACGFKDYLFADTFEEAVLTAAKIAMPGDAVLL 423


>gi|24987384|pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate-Alanine Ligase
           Murc (Tm0231) From Thermotoga Maritima At 2.3 A
           Resolution
          Length = 469

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 17/221 (7%)

Query: 208 SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             TN   DH++ +  +   Y +A    FE++       + +A+D  +  +          
Sbjct: 186 IITNARGDHLENYGNSLTRYRSA----FEKISRNTDLVVTFAEDELTSHLGD-------- 233

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAI 325
            ++ G +     L+   A   +Q+  +   GK + +    +PG   V NAL    L  ++
Sbjct: 234 -VTFGVKKGTYTLEXRSASRAEQKAXVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL 292

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           G D A VLE LE+   V  RF     +      +  DYAHT + +  +L+  + +     
Sbjct: 293 GYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEK 352

Query: 385 IVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           IVV F         +       AL LAD  +VT+     E+
Sbjct: 353 IVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEE 393


>gi|218258172|ref|ZP_03474574.1| hypothetical protein PRABACTJOHN_00228 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225708|gb|EEC98358.1| hypothetical protein PRABACTJOHN_00228 [Parabacteroides johnsonii
           DSM 18315]
          Length = 472

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 118/370 (31%), Gaps = 38/370 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ +S V  + ++S      +   + +    ++              
Sbjct: 111 CSRGLCVAGTHGKTTTSSMVAHLLKQS-----HVDCNAFLGGILKNYNS----------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + + S       +EA       H L   K      T+   DH+D + T +AY  +    
Sbjct: 155 -NLMLSAESDLTVIEADEFDRSFHWL---KPYMAVITSADPDHLDIYGTPEAYRES-FEH 209

Query: 234 FEELLPKESP----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNK 288
           F  L+  +        I       + V    +        +     +             
Sbjct: 210 FTSLIRPDGCLLMKQGINVTPRLQEGVKFYTYTGALDTKELSISNSQLSTFYAENVRIGG 269

Query: 289 QQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            ++     G D    D    +P +  V N + A  L    G+    +   +        R
Sbjct: 270 GEIFFDFVGPDVRIPDIQLGVPVKVNVENGVAAIALAWLNGVTPEEIKHGMATFAGPRRR 329

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGK 404
           F+F         +  DYAH    L+  + +++ + +GR +  +F                
Sbjct: 330 FDF-HLKKENIVLIDDYAHHPAELKASILSVKELYAGRKVTGIFQPHLYTRTRDFAADFA 388

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAI-EMLNKQ 459
            +L L D  I+ D  P  E+P  I       I   +   +    R E +   +     K 
Sbjct: 389 ASLSLLDELILLDIYPAREEP--IPGVTSQIIFDAVTIADKRLIRKEELLEVVAAEAGKL 446

Query: 460 DVLVVAGKGH 469
           +V+++ G G+
Sbjct: 447 EVVLMVGAGN 456


>gi|161612470|ref|YP_001586435.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161361834|gb|ABX65602.1| hypothetical protein SPAB_00160 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 438

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDADRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E    K    ++
Sbjct: 158 ELSSFQLE--TTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE----KAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGVNMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLTGDRIRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAQ------QTETMEEAMRLLAPRVQPGDMVLL 410


>gi|91209152|ref|YP_539138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UTI89]
 gi|110640301|ref|YP_668029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 536]
 gi|117622374|ref|YP_851287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|191174589|ref|ZP_03036083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218557028|ref|YP_002389941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli S88]
 gi|237704237|ref|ZP_04534718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|300984510|ref|ZP_07177002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|306815314|ref|ZP_07449463.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|331661134|ref|ZP_08362066.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
 gi|118595655|sp|Q0TLQ1|MURD_ECOL5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595656|sp|Q1RGA7|MURD_ECOUT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91070726|gb|ABE05607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           UTI89]
 gi|110341893|gb|ABG68130.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           536]
 gi|115511498|gb|ABI99572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|190905136|gb|EDV64781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218363797|emb|CAR01457.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           S88]
 gi|222031919|emb|CAP74657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LF82]
 gi|226902149|gb|EEH88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|281177308|dbj|BAI53638.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE15]
 gi|294492798|gb|ADE91554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           IHE3034]
 gi|300306679|gb|EFJ61199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|305850976|gb|EFM51431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|307629662|gb|ADN73966.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UM146]
 gi|312944694|gb|ADR25521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315285166|gb|EFU44611.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 110-3]
 gi|315300011|gb|EFU59249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 16-3]
 gi|323950916|gb|EGB46793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H252]
 gi|323955286|gb|EGB51059.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H263]
 gi|324012251|gb|EGB81470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 60-1]
 gi|331052176|gb|EGI24215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
          Length = 438

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    +    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|116495192|ref|YP_806926.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei ATCC
           334]
 gi|227534790|ref|ZP_03964839.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239632074|ref|ZP_04675105.1| UDP-N-acetylmuramate-L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|122263391|sp|Q037Y8|MURC_LACC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116105342|gb|ABJ70484.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei ATCC
           334]
 gi|227187546|gb|EEI67613.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526539|gb|EEQ65540.1| UDP-N-acetylmuramate-L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 436

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 111/372 (29%), Gaps = 53/372 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +         +S+ IG   T             +  Y    L+Y 
Sbjct: 106 IGVAGAHGKTSTTGLLAHTLSGVAKTSYLIG-DGTGKGIPDSKFFVFEADEYRRHFLAY- 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+   +  ++A    FE  
Sbjct: 164 -------------------------HPDYMIMTNIDFDHPDYYTGFEDVYDA----FETE 194

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV 295
             +   AI+ + DD + +++      A   V   G         + V             
Sbjct: 195 ANQVKKAIVAWGDDPWLRKL-----KAKVPVYYYGISDRDDFQARNVDRDTKGSSFDAYF 249

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             +    F  PL GE  V NAL    +     +D+ L+   L     V  RF        
Sbjct: 250 HDQLIGHFFVPLFGEHSVLNALAVVAVAHMEKLDAKLIARELGNFSGVKRRFAEKDLKDM 309

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH  N ++  L   R       II VF                  L  AD  
Sbjct: 310 --IIVDDYAHHPNEIKATLDAARQKYPDKAIIAVFQPHTFSRTQAYEPQYVQVLSQADQT 367

Query: 414 IVTDD-NPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +T   +   E   KIR  +I   I G        E ++  ++  N   V+V  G G   
Sbjct: 368 FLTPIFSSAREKTGKIRSEDITAQIKGAAVIHQ--EDMKPLLQYHNA--VVVFMGAGD-- 421

Query: 472 VHIVTNGEKKMS 483
              +   EK   
Sbjct: 422 ---IQKYEKAYE 430


>gi|333010584|gb|EGK30017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           VA-6]
          Length = 438

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|288801607|ref|ZP_06407049.1| UDP-N-acetylmuramate--alanine ligase [Prevotella melaninogenica
           D18]
 gi|288335649|gb|EFC74082.1| UDP-N-acetylmuramate--alanine ligase [Prevotella melaninogenica
           D18]
          Length = 458

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 125/364 (34%), Gaps = 47/364 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ +S    +  +S L          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSSMCAHLMHQSHLDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S     V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSDHSDFVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + K    II       ++ ++   N     R+          H + +   +         
Sbjct: 214 IQKGGALII-------RKGLEMKPNVQEGVRIYEYSRDEGDFHAENIRIANGTITFDFFS 266

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             ++  D     P    + N + A  +    G  +  +   ++    V  RF+F   ++R
Sbjct: 267 PIENIKDIELGQPIPINIENGISAMAMAQLNGCTAEELRNGMKTYGGVDRRFDFKIKDNR 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                 DYAH    +    K+++      ++  +F                 AL   D  
Sbjct: 327 H-VFLSDYAHHPKEILQSAKSLKELYADKKVTAIFQPHLYTRTRDFYKEFAEALSHFDEV 385

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVA 465
           ++T+  P  E+P      E I   +   +   + K +        ++ +  +  DVLVV 
Sbjct: 386 VLTEIYPAREEPIPGVTSELIYDNLSPNVKKQMIKKD------DVLDFVKSRDFDVLVVL 439

Query: 466 GKGH 469
           G G+
Sbjct: 440 GAGN 443


>gi|269103565|ref|ZP_06156262.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163463|gb|EEZ41959.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 451

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 124/363 (34%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ AS +  I +  G +   +     + +F    R        L +
Sbjct: 101 HDRWVMAVSGTHGKTTTASMLAWILEDCGYNPGFL-VGGVLGNFGVSAR--------LGE 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     ++       
Sbjct: 152 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLKSIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +     A   E ++    +    +     G   H +    + +  Q +
Sbjct: 207 LV-RTVPGNGRILAPHGVAAIDETLEMGCWSELEYI-----GGDGHWQAEKLMADGSQFS 260

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G+    + +PL G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLDGEKVGVVNWPLVGDHNVNNALMAIAAARHVGVTPDLACEALGNFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
              G ++Y D+AH   ++E+ L  +R       RI+ V          G        +L 
Sbjct: 320 EVNGVKVYDDFAHHPTAIELTLGGLRAKVGADARILAVLEPRSNTMKLGVHKDDLAPSLQ 379

Query: 409 LADIAIVTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
            AD   +   N  P S       ++I +         + ++  +        + D ++V 
Sbjct: 380 AADEVFLFQPNNIPWS------VSDIANQCSQPAFTNDDLDGLVAEICAHAKEGDTILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|255020011|ref|ZP_05292084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970540|gb|EET28029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 454

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 134/378 (35%), Gaps = 54/378 (14%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA+ ++VS   +    +        I +  +  +     A          I A+
Sbjct: 64  ADAL-LGADLVLVSPGLAPTLPALRAAREAGIALWSDV-ELFGRLAR-------APIAAI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+V + + ++ + +G      G   T                    AL  L   
Sbjct: 115 TGSNGKSTVTTLLGEMAKAAGRRVAVGGNLGT-------------------PALDLLPEA 155

Query: 181 GVTH---VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           G        +E SS  L  H    ++    +  NL  DH+D+H   +AY  AK R+F   
Sbjct: 156 GAPEPELYVLELSSFQL--HYCHALRPRVAAILNLSPDHLDWHGDMEAYLAAKARIF-RT 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + +    ++  +D   + +  +A  AG  +   G+  +        A+H      + +  
Sbjct: 213 MGEGDTLVLNGEDPALQSLPAKAP-AGVEIRRFGHTPQLDAWADDLALHWPSAAPMPLAD 271

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG+    N L AA +  A+ +    + +       +P R ++V     GG 
Sbjct: 272 ------IHLPGKHNGENVLAAALMANALNLPETAIRQAAADFRGLPHRLQWVA--RVGGV 323

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y D +  +N L   L+ I+ +      +V   GGD        + +         ++  
Sbjct: 324 DYYDDSKGTN-LGASLRAIQALPG---PLVLILGGDAKGADLSPLREALRGQRGAVLLGK 379

Query: 418 DNPRSEDPEKIRAEIIHG 435
           D         I   I+ G
Sbjct: 380 D-------AAILEAILAG 390


>gi|168230405|ref|ZP_02655463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469017|ref|ZP_03075001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197248149|ref|YP_002145112.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194455381|gb|EDX44220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197211852|gb|ACH49249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205334952|gb|EDZ21716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 438

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDADRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E    K    ++
Sbjct: 158 ELSSFQLE--TTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYE----KAKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGVNMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D  +   
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLTGDRIRLYCFGRDGAQF-- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 378 -AALRPEIAQ------QTETMEEAMRLLAPRVQPGDMVLL 410


>gi|157150961|ref|YP_001449831.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189082506|sp|A8AVM1|MURC_STRGC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157075755|gb|ABV10438.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 443

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 109/348 (31%), Gaps = 42/348 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVA 130
           + + Y +   +A    N   +   N             G    + ++    G  GK+S  
Sbjct: 59  IQADYEIIAGNAFRPDNNVEIAYANEHGISYKRYHEFLGSFMRDFVSFGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S                         G  +   E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGS------------------------AGAKYFVFE-- 152

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S   ++H +          TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 153 SDEYERHFMPY-HPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              + +   A      +   G++ G       +          +S  G++  +F  P  G
Sbjct: 209 EQLRRITSEAP-----IYYYGFEKGNDFVAHDLLRSTTGSTFKVSYRGQELGEFHIPTFG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA    GL    G D  LV EHL+    V  RF     N  G  I  D+AH    
Sbjct: 264 RHNIMNATAVIGLLYVSGFDLNLVREHLKTFAGVKRRFTEKVVN--GTVIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   L   R    S  I+ +F                 AL+ AD   +
Sbjct: 322 IIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFADALNQADAVYL 369


>gi|163854031|ref|YP_001642074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium extorquens PA1]
 gi|163665636|gb|ABY33003.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens PA1]
          Length = 455

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 103/318 (32%), Gaps = 35/318 (11%)

Query: 67  GAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           G  A+V++    L      ++  +     I V+ +   F    A+          +A+TG
Sbjct: 65  GFSALVLAPGVPLTHPEPHWTVGLARQAGIPVIGDIEIFCRERAALA---PDAPFVAITG 121

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  +    + + +G      G   T                     LS       
Sbjct: 122 TNGKSTTTALTAHLLRHAGRDVQMGGNIGT-------------------AILSLEPPAAT 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               VE SS  +D      +K   G   NL  DH+D H T + Y   K RL         
Sbjct: 163 RVHVVELSSFQIDL--TPSLKPGVGILLNLTPDHLDRHGTMENYAVIKERLVAG----AD 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD Y   + +R      R+   G+                    +     +   
Sbjct: 217 LAVIGVDDPYCAAIAERRTGERIRLHIEGHGDAAGDYVGANGTVRGPDGAVIA---EVSG 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           +  L G+  + NA  A    I +G+ S  +   L+    +  R E +        +    
Sbjct: 274 IQALLGDHNLQNAAAAVAAAIRLGLTSTEIAAGLKSFPGLAHRMEPLRRIGPTLFVNDSK 333

Query: 363 AHTSNSLEMILKNIRTIT 380
           A  ++S E  L   R I 
Sbjct: 334 ATNADSTEKALLAFRDIH 351


>gi|123441030|ref|YP_001005019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087991|emb|CAL10779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 444

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 148/400 (37%), Gaps = 52/400 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  +   + +V +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSEAAEAGVEIVGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L K L+ L       V +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVP-------------ALNLLKQLT-LQKHENQLVVL 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 164 ELSSFQLE--TTSSLHASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN----AKVCVV 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 218 NADDALTMPV----RGADNRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 268

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  +  L+ L     +P RF+ V  ++    I    A 
Sbjct: 269 KLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLVFEHNGVRWINDSKAT 328

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +      +   +  D   I     D    E 
Sbjct: 329 NVGSTEAALDGLPL--DGTLHLLL-GGDGKSADFSGLTRFLQGDHIKIYCFGRD---GEQ 382

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 383 LAELRPEVSQ------LTETMEQAMVLLAKSLAPGDMVLL 416


>gi|110804152|ref|YP_687672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 5 str. 8401]
 gi|110613700|gb|ABF02367.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri 5
           str. 8401]
          Length = 438

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NALVA  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|24111533|ref|NP_706043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 301]
 gi|62900692|sp|Q83MF9|MURD_SHIFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24050291|gb|AAN41750.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 301]
 gi|281599450|gb|ADA72434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2002017]
 gi|332762278|gb|EGJ92545.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2747-71]
 gi|332762649|gb|EGJ92914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           4343-70]
 gi|332764934|gb|EGJ95162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-671]
 gi|332768878|gb|EGJ99057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2930-71]
 gi|333009070|gb|EGK28526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-218]
 gi|333022251|gb|EGK41489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-304]
          Length = 438

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 151/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NALVA  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P++  +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLVRYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|116073647|ref|ZP_01470909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
 gi|116068952|gb|EAU74704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
          Length = 457

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 121/385 (31%), Gaps = 40/385 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+S        +        I V           A           + +TGT+GK++V 
Sbjct: 71  VVISPGIPWDHPTLGSLRQQDIAVC-------GEMAVAWDALSHRPWIGITGTNGKTTVT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +Q +   +GL +   G                 S   LA A S         + +E S
Sbjct: 124 HLLQHVLSHAGLQAPMAGNVG-------------HSAAELALACSSGHLPQPDWIVMEMS 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ ++      +    G +T L  DH++ H T  AY   K      LL +   A++ ADD
Sbjct: 171 SYQIEAA--QQVAPRIGIWTTLTPDHLERHGTLDAYRAIK----HGLLARSEQAVLNADD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                   +   A     S                   ++  +           PLPG  
Sbjct: 225 PDLCRHHHQWPAATWVSTSPTPPVPCTLWIDPEQWVCSREQRLFPAD-----ALPLPGNH 279

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L+     +  G+  + +   L     VP R E +G   +G R+Y D   T+    
Sbjct: 280 NRQNMLLVTAAALHAGLPPSAIEAALRCFSGVPHRLEPLGL-VKGMRVYNDSKATN---- 334

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
                   + +     V   GG   QG       +  + A   ++     R E    I  
Sbjct: 335 -YDAAAVGLRAVAAPAVVLAGGQTKQGDASEWLSLLKERAAAVVLFGHGAR-ELKTLIAG 392

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEM 455
               G    ++  +   A++ A+ +
Sbjct: 393 ASFDGQVALVDTLD--AAVKEALAL 415


>gi|255065972|ref|ZP_05317827.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sicca ATCC 29256]
 gi|255049883|gb|EET45347.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sicca ATCC 29256]
          Length = 472

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 117/360 (32%), Gaps = 22/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L V GT GK++ AS +  + + +GL+   +     I    ++  ++   P    +
Sbjct: 117 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSVSARLPQTPRQ 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 172 DPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAI-QTQFH 230

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   +        ++ + +       V   G +    H  +V  ++      
Sbjct: 231 HLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQVGEVNADGSFD 284

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++GK      + L G     NAL         G+D       L     V  R E  GT
Sbjct: 285 VLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACAALSAFKNVKRRMEIKGT 344

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
              G  +Y D+AH   ++E  ++ +R       I+              +   +  +L  
Sbjct: 345 -VNGITVYDDFAHHPTAIETTIEGLRQRIGNARILAVLEPRSNTMKLGTMKAALPESLRD 403

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           AD            D     AE +  +   +  G   +A +   ++     D ++V   G
Sbjct: 404 ADQVFC---YAGGVDWN--VAEALEPLGSKLHVGKDFDAFVAEIVKNAEAGDHILVMSNG 458


>gi|218245822|ref|YP_002371193.1| cyanophycin synthetase [Cyanothece sp. PCC 8801]
 gi|218166300|gb|ACK65037.1| cyanophycin synthetase [Cyanothece sp. PCC 8801]
          Length = 877

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 125/357 (35%), Gaps = 31/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I +++G     +G T+T   +  +  +          A   L    V    +E + 
Sbjct: 505 LTAHIYRQTGKV---VGYTTTDGIYLGEYLVEKGDNTGPFSANVILKDPTVEVAVLETAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           AK++ +  E++  +  AI+ ADD
Sbjct: 562 GGILRSGLAFDTCDVGIVLNVAADHLGLGDINTIEQMAKVKSVIAEVVHPDGYAILNADD 621

Query: 251 AYSKEVMKRAHNAGCRV------------LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                + +R                    L  G          +  +   Q + I  E  
Sbjct: 622 PLVSAMAERVKAKVAYFSMSPDNPIIENHLRRGGLAAVYENGYLSILEGHQTLRIE-EAA 680

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
           +          F + NAL A     A G+D  ++ + +          PGR         
Sbjct: 681 NIPMTMGGMAPFMIANALAACLATFAQGVDIEMIRQGVRTFKASVNQTPGRMNLFNLGDY 740

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH     E +   +R     R+ VV G G  RD+    ++GKIA  + +  I
Sbjct: 741 HALV--DYAHNPAGYEAVGGFVRNWKGERLGVVGGPGDRRDEDLI-LLGKIAAQVFNRII 797

Query: 415 VTD-DNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V + D+ R  D  ++   II GI        +    +  EAI   +  +N+  ++V+
Sbjct: 798 VKEDDDRRGRDRGEVADLIIKGIVQENSQIEYEAILDETEAIEVGLNRVNRGGLVVI 854


>gi|124021741|ref|YP_001016048.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9303]
 gi|166224716|sp|A2C5M3|MURC_PROM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123962027|gb|ABM76783.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 488

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 92/288 (31%), Gaps = 32/288 (11%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G  TNL  DH D++       N   R            +   D    KE       
Sbjct: 189 QATLGVITNLELDHTDHYADLDELINTMKRFGRGC----RRLLANFDCPILKEHFDATAW 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
              +  +    G       +C   ++    I  +GK       P+PG   + NA+ A   
Sbjct: 245 WSVKTSA----GVDFAALPICLNGDQTIADIYEQGKRMGQITLPMPGLHNLSNAMAAIAA 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379
           C   G+    + + L  L     RF+F GT   G +I  DYAH  + +   L   R I  
Sbjct: 301 CRLAGLSFEDLQQGLADLQPPGRRFDFRGTWE-GRQIVDDYAHHPSEVSATLAMARLIVT 359

Query: 380 --------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                      RI+ VF         +       AL  AD  ++       E+P  I+  
Sbjct: 360 SGRSQLPSPPKRILAVFQPHRYSRTNEFLYEFARALGEADAVLLAPVYSAGENP--IQGA 417

Query: 432 IIHGIPGFIEK--GNRIEAIRT--------AIEMLNKQDVLVVAGKGH 469
               +   I     N   A+            +   K D+++  G G+
Sbjct: 418 TSESLANAIRIQHPNLPVAVAENFNQLTLLVQKHSLKGDLVLAMGAGN 465


>gi|332653273|ref|ZP_08419018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
 gi|332518419|gb|EGJ48022.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
          Length = 460

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 130/433 (30%), Gaps = 95/433 (21%)

Query: 67  GAEAIVV-----SSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILA 119
           GA  ++           L   +  +  NTP L   V+N    LS      +   P +++A
Sbjct: 61  GATLVLGPDYLKDLGGELIFRTPGLSPNTPELAQAVENG-AALSSEMEVFFQTCPSHLVA 119

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+ GK++  + + +  + +G + +  G          D     P              
Sbjct: 120 VTGSDGKTTTTTIISEFLKEAGKTVYVGGNIG--KPLLPDVADMDPE------------- 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               +  +E SS  L               TNL  +H+DYH T + Y NAK  +F     
Sbjct: 165 ---DYAVLELSSFQLMTM---EQSPNIAVITNLAPNHLDYHHTMEEYTNAKKNIFLHQ-G 217

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    I+  D+  ++ +   A    C V     + +      +          +      
Sbjct: 218 EGDRLILNYDNEVTRSMAAEA---VCPVTWFSRKERLEEGVYLRDNAIWLTNEMGSREVL 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 LPG   + N + A      + +    V     + H V  R E V     G + Y
Sbjct: 275 PLSDIQLPGVHNIENYMAAIAAVDGL-VPDKCVRAVARRFHGVEHRIELV-RELDGVKYY 332

Query: 360 VDYAHTSNS-LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            D   TS S     L++       + I++   G D+      +                 
Sbjct: 333 NDSIGTSPSRTTACLESF-----NQKIILIAGGYDKGVPFTQLGV--------------- 372

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML---------------------- 456
                       EI+  +      GN   AIR A+E                        
Sbjct: 373 ------------EIVGHVKALFLTGNTAGAIRQAVEQAPGYAESGMILAETEDLAAAVAA 420

Query: 457 -----NKQDVLVV 464
                   DV+V+
Sbjct: 421 ARQAAKPGDVVVL 433


>gi|9257128|pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|13096498|pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 117 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 157 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 211 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 261

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 262 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 321

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 322 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 376 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 409


>gi|323964816|gb|EGB60283.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           M863]
 gi|327255066|gb|EGE66669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           STEC_7v]
          Length = 438

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|323935140|gb|EGB31507.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1520]
          Length = 438

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLEDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LASLRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|307266535|ref|ZP_07548068.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918454|gb|EFN48695.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 454

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 115/321 (35%), Gaps = 26/321 (8%)

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           S +    ++          +   L Y   +      + A         +   K       
Sbjct: 124 SLLGEMFKNAGRKVYVAGNIGYPLIYAVMEATEGDFIVAEISSFQLETIKEFKPKISCII 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH++ H+T ++Y + K R+FE     +   ++  DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLNRHKTFESYRDIKGRIFENQ-RGDEYTVLNFDDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIG 326
             +       +  A      + ISV G     +      +PGE  + NAL A+ +    G
Sbjct: 240 SRKSSL----ENGAYVKDGSIYISVNGNAKKIIDIEEIYIPGEHNLENALAASSVAYLSG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ +     IV
Sbjct: 296 ISANVIANTLKTFKGVEHRIEFVD-EINGVKFYNDSKGTNP--DASIKAIQAL--KTPIV 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443
           +   G D+       +      +  + ++       +  +KIR             +  G
Sbjct: 351 LIAGGYDKGSEFDEFVKAFNGKVKKLILI------GQTAKKIRDTARKYSYPEDDILFAG 404

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
              EA++ A E   + D +++
Sbjct: 405 TLEEAVKKAYESAKEGDSVLL 425


>gi|254495864|ref|ZP_05108774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
 gi|254354900|gb|EET13525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
          Length = 444

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 125/352 (35%), Gaps = 41/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TGT+GKS+V + V ++ + +G +    G                   + +   L
Sbjct: 105 APVIAITGTNGKSTVTTLVGEMAKAAGYNVAVAGNIG----------------MPVLDML 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  LD      +  +  +  N+  DH+D H +  AY  AK R++
Sbjct: 149 ED--EHQYDLWVLELSSFQLDL--TSSLAPVVATILNVSPDHLDRHHSMDAYIRAKQRVY 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     +   DDAY++           R +S G        +    I+ + ++ ++
Sbjct: 205 ----HHAQVVLFNRDDAYTE-----PAGQVIRAISFGNNQ--PATEDWGLINQEDKIYLA 253

Query: 295 VEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                F     +  +      NAL A  L  A GI    ++  L     +  R ++V T 
Sbjct: 254 HGNSCFLATESVLIKGVHNWLNALAACALADAAGIPRQYIISVLTTFSGLSHRCQWVRT- 312

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G     D   T+    +   N    +    IV+   G  +      +   IA  +  I
Sbjct: 313 LDGVEWINDSKGTNIGATISAINGIGGSMQGRIVLIAGGQGKGADFSELAQPIADFVRSI 372

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++       ED +KI A +   +P      +   A+  A       DV+++
Sbjct: 373 VLI------GEDADKIAAALADVVP-ITRASSLDNAVAVAKTQAKPGDVVLL 417


>gi|16128081|ref|NP_414630.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89106971|ref|AP_000751.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. W3110]
 gi|157159559|ref|YP_001456877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli HS]
 gi|170021556|ref|YP_001726510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ATCC 8739]
 gi|170079727|ref|YP_001729047.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188492751|ref|ZP_03000021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194439413|ref|ZP_03071490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|238899489|ref|YP_002925285.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|253774882|ref|YP_003037713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037503|ref|ZP_04871580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|254160210|ref|YP_003043318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli B str. REL606]
 gi|256025402|ref|ZP_05439267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           sp. 4_1_40B]
 gi|297519210|ref|ZP_06937596.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli OP50]
 gi|300931785|ref|ZP_07147085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|300949894|ref|ZP_07163857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300955954|ref|ZP_07168287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|301028571|ref|ZP_07191801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|301646400|ref|ZP_07246282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|307136689|ref|ZP_07496045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli H736]
 gi|312970182|ref|ZP_07784364.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|331640541|ref|ZP_08341689.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331650985|ref|ZP_08352013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|127537|sp|P14900|MURD_ECOLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|40856|emb|CAA38865.1| UDP-MurNac-L-Ala-D-Glu (MurD) (AA 1-438) [Escherichia coli]
 gi|42060|emb|CAA35933.1| unnamed protein product [Escherichia coli]
 gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|21321969|dbj|BAB96656.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K12 substr. W3110]
 gi|157065239|gb|ABV04494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           HS]
 gi|169756484|gb|ACA79183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ATCC 8739]
 gi|169887562|gb|ACB01269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188487950|gb|EDU63053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194421672|gb|EDX37682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|226840609|gb|EEH72611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|238863752|gb|ACR65750.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|242375924|emb|CAQ30605.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BL21(DE3)]
 gi|253325926|gb|ACT30528.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972111|gb|ACT37782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli B str. REL606]
 gi|253976320|gb|ACT41990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli BL21(DE3)]
 gi|260450705|gb|ACX41127.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           DH1]
 gi|284919868|emb|CBG32923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           042]
 gi|299878382|gb|EFI86593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|300317174|gb|EFJ66958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|300450726|gb|EFK14346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300460445|gb|EFK23938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|301075370|gb|EFK90176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|309700299|emb|CBI99587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ETEC H10407]
 gi|310337680|gb|EFQ02791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|315134782|dbj|BAJ41941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli DH1]
 gi|315616133|gb|EFU96752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           3431]
 gi|323939872|gb|EGB36072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E482]
 gi|323960034|gb|EGB55680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H489]
 gi|331040287|gb|EGI12494.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331051439|gb|EGI23488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|332341420|gb|AEE54754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Escherichia
           coli UMNK88]
 gi|333011476|gb|EGK30890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-272]
 gi|333021719|gb|EGK40968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-227]
          Length = 438

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|307152668|ref|YP_003888052.1| cyanophycin synthetase [Cyanothece sp. PCC 7822]
 gi|306982896|gb|ADN14777.1| cyanophycin synthetase [Cyanothece sp. PCC 7822]
          Length = 879

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 129/356 (36%), Gaps = 29/356 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I +++G     +G T+T   +  +  +          A   L    V    +E + 
Sbjct: 505 LTAHIYRQTGKV---VGYTTTDGVYVGEFLVEKGDNTGPYSASMILKDPTVEIAVLETAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+     +     AK++ +  E++  +  A++ ADD
Sbjct: 562 GGILRSGLAFETCDIGVVLNVAADHLGIGDIETVEQMAKVKSVVAEIVNADGYAVLNADD 621

Query: 251 AYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTISVEG-KD 299
               ++ KR                    V   G     +       + + T+ VE  K+
Sbjct: 622 PLVAQMAKRVKGKVAYFSMNPENPIIHDHVRRNGLAAVYENGYLSIMEGKWTLRVEEAKN 681

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRG 355
                     F + NAL A     A G+D  ++ + +          PGR       S  
Sbjct: 682 VPVTMGGMAPFMIANALAACLAAFAHGVDIEMIRQGVRTFKPSAAQTPGRMNLFNLGSYH 741

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH     E +   +R     R+ VV G G  RD+    ++G++A  + D  IV
Sbjct: 742 ALV--DYAHNPAGYEAVGGFVRNWQGERLGVVGGPGDRRDEDLI-LLGQLAAQMFDRIIV 798

Query: 416 -TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             DD+ R  +  ++   I+ GI        +    N + AI   +  + +  ++V+
Sbjct: 799 KEDDDTRGRERGEVADLIVKGIIQENPNLRYDVILNEVTAIEEGLNQVQRNGLVVI 854


>gi|256821912|ref|YP_003145875.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
 gi|256795451|gb|ACV26107.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
          Length = 444

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 141/398 (35%), Gaps = 55/398 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS   ++          + + V+ +   F           +   ++A+TG++GKS+V 
Sbjct: 71  LVVSPGIAIARDDIQAAQESGVSVIGDIELFAQA--------NTLPVIAITGSNGKSTVT 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V ++   SG  +   G                        AL  L  +G  +V++E S
Sbjct: 123 DLVGELINASGKKALVGGNIGV-------------------PALDLLKLEG-DYVALELS 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+  R   ++ +A +  N+  DH+D ++  Q Y +AK  ++     K    ++ ADD
Sbjct: 163 SFQLESTR--SLEPVAATVLNVSEDHLDRYKNYQEYIDAKRSIYA----KARTCLVNADD 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPG 308
             +     ++  +G  +L  G       +            TI  +G +   L    L G
Sbjct: 217 ENT---WIKSAESGQNILRFGLSNNSDKIDWAVDFETC---TIMHDGNEILKLDELTLQG 270

Query: 309 EFQVYNALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                N  VA  L     I+    VL+  +    +P R + V     G     D   T+ 
Sbjct: 271 IHNALNVAVALALVDIAEIELTQAVLDAAKSYQGLPHRSQLVAIK-DGITFINDSKATNV 329

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
              +   +      G+ I++   G  +      +   I   +  +     D P       
Sbjct: 330 GATVAAIHSFEPQFGKNIILIAGGDAKGADLSSLQEIIKETVKAVVCFGKDAPA------ 383

Query: 428 IRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
               I    P   +   N  EA+R A E   K D++++
Sbjct: 384 ----IAKLAPAKTQLVSNLEEAVRIAYEQAQKGDLVLL 417


>gi|222053879|ref|YP_002536241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
 gi|254766051|sp|B9M170|MURD_GEOSF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221563168|gb|ACM19140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
          Length = 453

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 141/416 (33%), Gaps = 61/416 (14%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           + D H F+        + IVVS    +      +      +V+       +         
Sbjct: 60  RHDKHTFLMS------DLIVVSPGVPMDISPLLMAKAQRRVVISEIELAAAFI------- 106

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++A+TGT+GK++  +   +I +  G+ +F  G                        
Sbjct: 107 -KAPMVAITGTNGKTTTTTLAGEIFKACGVETFVGGNIGN-------------------- 145

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  L + G     V           +   +       N+  DH+D + + Q Y +AK+R
Sbjct: 146 PLIELVTSGNDVAQVVVELSSFQLEGIQRFRPKVAVLLNITEDHLDRYASYQDYIDAKLR 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHN 287
           +FE     +  A++  DD     V   A     RV          +G F     +     
Sbjct: 206 IFENQTVDD-FAVLNVDDPL---VAACAATVKSRVFPFSQRKELAEGIFCSKGIIVYRWQ 261

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             ++            F L G   + N + A    +  G D       +E    +  R E
Sbjct: 262 GSELRFDT------AAFKLKGVHNIENIMAALASTLLSGADPIKAGRAVESFKGLRHRME 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+     GG  Y + +  +N +  ++K++ +   G  I +   G D+     P+   +  
Sbjct: 316 FI--REVGGVAYYEDSKGTN-VGSVVKSLESFDKG--ITLIAGGKDKGGSYAPLADLVRE 370

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +  + ++       E  E+I AE+ + +    +     +A+  A  +    +V++
Sbjct: 371 RVKHLILI------GEAKERIEAELGN-LTDTHKAATLEDAVAIAHRLAKAGEVVL 419


>gi|83596046|gb|ABC25404.1| UDP-MurNAc-pentapeptide synthetase [uncultured marine bacterium
           Ant39E11]
          Length = 364

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 102/314 (32%), Gaps = 33/314 (10%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +  V N    L   A          ++ +TG++GK++     + +  +S       G   
Sbjct: 12  VYKVVNALTSLQELAHAHRMNWGGTLIGLTGSNGKTTAKELFRSVLSQSFNVHATDG--- 68

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  +       P+ L        S  V  + + A+  G             G  TN
Sbjct: 69  -------NFNNHIGLPLTLVGL---KKSHEVAVIEMGANHRGEIASLTAIAAPDIGYITN 118

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            G+ H++           K+ L++ L     P+++   D    E                
Sbjct: 119 FGQAHLEGFGGVDGVIQGKIELYQWLTSHGKPSLVNDSDPLQIEHAG------------- 165

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              K    K V      Q V +++   D      L G+F   + + +  L   +G+    
Sbjct: 166 -NNKLPSSKDVVCQSKDQGVHVTI--GDTRAQSHLVGDFHSGSLVASVNLGRYMGMADEA 222

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           + + +E       R +++ T+S   RI++D Y    +S+E  L  +  +    +  V+  
Sbjct: 223 IAKGIEAYIPSNNRGQWLTTDSN--RIFLDAYNANPSSMEASLLAVHALHP-ELPHVYIA 279

Query: 391 GGDRDQGKRPIMGK 404
           G   + G       
Sbjct: 280 GDIFEMGSHEKSAH 293


>gi|3122408|sp|O31211|MURC_STAAU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2642659|gb|AAB87090.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Staphylococcus aureus]
          Length = 437

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 123/365 (33%), Gaps = 62/365 (16%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     + +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPESDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------KPDYAIMTNIDFDHPDYFKDINDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                  II + DD + +++      A   +   G+     I+ + +          + V
Sbjct: 193 AHNVKKGIIAWGDDEHLRKI-----EADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYV 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +D FL P  G+  V NAL    +     +D   + E LE    V  RF      ++
Sbjct: 248 DGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIANQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    +   ++  R       ++ VF                 +L  AD  
Sbjct: 308 --VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRV 365

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-------IEMLNKQD--VLVV 464
            +           +I   I     G +   + I+ I  A       I +L + D  V++ 
Sbjct: 366 FLC----------EIFGSIREN-TGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLF 414

Query: 465 AGKGH 469
            G G 
Sbjct: 415 KGAGD 419


>gi|88807416|ref|ZP_01122928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
 gi|88788630|gb|EAR19785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
          Length = 462

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 131/373 (35%), Gaps = 47/373 (12%)

Query: 98  TRKFLSLFASRLYGKHP--------ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           T   L     R+ G+             + +TGT+GK++V   +Q +   +GL +   G 
Sbjct: 85  TLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGN 144

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                           S   LA  +   +      V +E SS+ ++      +    G +
Sbjct: 145 VG-------------YSAAELALEVLQGTRPKPDWVVMEMSSYQIEAA--AEVSPRIGIW 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T L  DH++ H T +AY   K      LL +    ++ ADDA  ++       +  R +S
Sbjct: 190 TTLTPDHLERHGTIEAYRAIK----RGLLERSEIPVLNADDADIRQHCGHWSRSCIRWVS 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326
            G         ++              G+   F     PLPGE    N L+     +A G
Sbjct: 246 CGDHSPEGGNPQLTVNAQGW----VSRGEQHLFPADSLPLPGEHNRQNMLLVTAAALAAG 301

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + ++ +   L     VP R E +G+           A   ++  + L++++       +V
Sbjct: 302 VSASTIEAALRCFTGVPHRLEPLGSVGGIPVFNDSKATNYDAAAVGLRSVQA-----PVV 356

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPG-FIEKGN 444
           +   G  +     P +  I   +A + +        E   ++   I   G  G  I   +
Sbjct: 357 LLAGGQTKKGDAVPWLKLIQSQVAGVVLF------GEGAGELADLIETSGFAGPMIHCAD 410

Query: 445 RIEAIRTAIEMLN 457
              A+  A+ +  
Sbjct: 411 LDSAVSQALSLAR 423


>gi|319892796|ref|YP_004149671.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162492|gb|ADV06035.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 437

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 121/360 (33%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T     Q       +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPQSEYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY +      NA    F+ +
Sbjct: 162 -------------------------SPDYAIITNIDFDHPDYFKDVDDVINA----FQGM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
                 AII + DD Y K +          V   G+     ++ + +    +  +    V
Sbjct: 193 AKNVKKAIIAWGDDPYVKNI-----EVDIPVYYYGFDTSMDVYAQNIEVTGSGTEFDAYV 247

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ +  F+ P  G+  + NAL    +     ++   + E L     V  RF    T ++
Sbjct: 248 KGEFYGHFVSPQYGDHNILNALAVLTISYLENLNLDNIKEALITFGGVKRRFN--ETFAQ 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R    +  ++ +F                  L+LAD  
Sbjct: 306 NQVLVDDYAHHPREISATIETARKKYPNKEVVAIFQPHTFSRTKAFLQEFADVLNLADQT 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGH 469
            + D      E+  ++   +++  + G             ++E L K D  VL+  G G 
Sbjct: 366 YLCDIFGSIRENQGELSINDLLKLVDGAHLID------ENSVEQLQKHDNAVLLFMGAGD 419


>gi|326391690|ref|ZP_08213215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992268|gb|EGD50735.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 454

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 115/321 (35%), Gaps = 26/321 (8%)

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           S +    ++          +   L Y   +      + A         +   K       
Sbjct: 124 SLLGEMFKNAGRKVYVAGNIGYPLIYAVMEATEGDFIVAEISSFQLETIKEFKPKISCII 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH++ H+T ++Y + K R+FE     +   ++  DD  +  +  +A    CRV   
Sbjct: 184 NITPDHLNRHKTFESYRDIKGRIFENQ-RGDEYTVLNFDDPVTWSLKNKAK---CRVFPF 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIG 326
             +       +  A      + ISV G     +      +PGE  + NAL A+ +    G
Sbjct: 240 SRKSSL----ENGAYVKDGSIYISVNGNAKKIIDIEEIYIPGEHNLENALAASSVAYLSG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I + ++   L+    V  R EFV     G + Y D   T+   +  +K I+ +     IV
Sbjct: 296 ISANVIASTLKSFKGVEHRIEFVD-EINGVKFYNDSKGTNP--DASIKAIQAL--KTPIV 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443
           +   G D+       +      +  + ++       +  +KIR             +  G
Sbjct: 351 LIAGGYDKGSEFDEFVKAFNGKVKKLILI------GQTAKKIRDTARKYSYPEDDILFAG 404

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
              EA++ A E   + D +++
Sbjct: 405 TLEEAVKKAYESAKEGDSVLL 425


>gi|320157422|ref|YP_004189801.1| UDP-N-acetylmuramate--alanine ligase [Vibrio vulnificus MO6-24/O]
 gi|319932734|gb|ADV87598.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus MO6-24/O]
          Length = 486

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 143/431 (33%), Gaps = 54/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA+  +   A ++ + S       I    P +      +        + A  +  +H
Sbjct: 64  AQKGAKVYIGHQATNVAEASVVVVSTAINEANPEVKAAREARIPVVRRAEMLAELMRFRH 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 124 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 175 IAEADESDASFL---------------HLQPMVCIVTNIEADHMDTYGGDFETLKQTFID 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F   LP    AI+  DD   +E++ R      +V++ G+ +   + ++       + + T
Sbjct: 220 FLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSEDADVRIENYRQEGQQGKFT 276

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
            +  + +  D    +PG     NA  A  +     I    +L  +        RFE +G 
Sbjct: 277 VVRKDCEALDITLNIPGRHNALNAAAAIAVATEDEIGDDAILAAMIGTQGTGRRFEHLGE 336

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             T +    +  DY H    +++ +   R      R++++F                  L
Sbjct: 337 FETGNGNVMLVDDYGHHPTEVDVTIHAARNGWQDKRLVMIFQPHRYSRTRDLYDDFANVL 396

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNK 458
           +  D+ ++ D     E    I       +   I    +I+ I  A           +L +
Sbjct: 397 EQVDVLVMLDVYAAGEK--AIAGADSRSLCRTIRSRGKIDPIFVADTQQLPEVLANILQE 454

Query: 459 QDVLVVAGKGH 469
            D+L+  G G 
Sbjct: 455 GDLLLAQGAGD 465


>gi|257784288|ref|YP_003179505.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
 gi|257472795|gb|ACV50914.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
          Length = 467

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 111/309 (35%), Gaps = 28/309 (9%)

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              A            +        N+  DH+++H + +AY  AK ++F  L   +  AI
Sbjct: 162 WFVAELSSFQLATTQKLHPHVAMLLNITPDHLEWHGSLEAYAAAKEKIFANLDVND-LAI 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-- 303
           +   D +   V  R      R +SV +  +     +  A      + + + GK+ + +  
Sbjct: 221 VSDLDEFCLAVSSRLE---ARGISVCHLAQTDPGTQNAAFVRNGALVVRLSGKEMELVAT 277

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G     NAL AA   + +GID   +   L     +  R E V T +    +   
Sbjct: 278 DALHIRGMHNALNALAAAACGLFLGIDIVSIRHALLDFMPLEHRIEPVKTINGVLYVNDS 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  ++S+E  L +       + I++   G D+         K++   A      +  PR
Sbjct: 338 KATNTDSVEKSLTSF----PDKDIILLLGGHDKGTELDKFAQKVSATCAYAICFGEAGPR 393

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-------------AGKG 468
             +       +  G    +E+ +  EA   A+E+     V+++             A +G
Sbjct: 394 FAEA---LRHVSGGRAEVVEEPHLREAFAHAVELARPGFVVLLSPACSSFDEFSGMAQRG 450

Query: 469 HETVHIVTN 477
           H    +V +
Sbjct: 451 HVFKQLVED 459


>gi|257068265|ref|YP_003154520.1| UDP-N-acetylmuramate--alanine ligase [Brachybacterium faecium DSM
           4810]
 gi|256559083|gb|ACU84930.1| UDP-N-acetylmuramate--alanine ligase [Brachybacterium faecium DSM
           4810]
          Length = 510

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 149/444 (33%), Gaps = 36/444 (8%)

Query: 48  AIVG-NKEDGHLFIPQAIAQGAE------AIVVSSAYSLQDFSATIRSNTPILVVDNTRK 100
           A+ G + +DG  FI    A GA       A +++    L   S  +R++ P +     R 
Sbjct: 62  AVSGSDSQDG-QFIAPLRAAGARIGIGFDAALLADDVDLVIVSTAVRADNPEVRAARERG 120

Query: 101 FL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                  A+         ++AV GT GK++         + +          + +    +
Sbjct: 121 LPVIHRAAALAGLLADRELIAVAGTHGKTTTTGMAVAALRGARRDPAWA-LGAAVPDLGR 179

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  L   SP+             V     + S      H L          TNL  DH+D
Sbjct: 180 NAGLCADSPVPGETPGGGTGLAVVEADESDGSFLAFAPHSL--------VVTNLEPDHLD 231

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFI 277
           +H   +    A   L   L P     ++ ADD  ++ + +RA + G  V+  G  +    
Sbjct: 232 FHGDAETLTAAFDALVGRLAP-GGTLVVCADDPGARALGERAADQGVDVVRYGAVEDAQW 290

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL--EH 335
            L++  +     ++ +            + G   V NAL A     A+  ++ +      
Sbjct: 291 ALREERSGARGAEIEVDTPHGPLTVQLAVTGHHNVLNALGALAATAAVTAETEVAALAAG 350

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGC 390
           +        RF+  G    G  +  DYAH    +   +   R I       GR++V F  
Sbjct: 351 VASFTGASRRFDVAGLAG-GVTVVDDYAHHPREVAATVAAARGIVAAQPDPGRVLVGFQP 409

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIPGFIEKGNR 445
                     +    A+  AD+A V       EDP+        A++       +  G  
Sbjct: 410 HLFSRTRAFAVDFAAAVSAADLAWVLPVYAAREDPDPTVDASTIADLAA--ESVVPVGGA 467

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGH 469
            E I          D+L++ G G 
Sbjct: 468 EELIERVRAAARPGDLLLMLGAGD 491


>gi|221134088|ref|ZP_03560393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Glaciecola sp. HTCC2999]
          Length = 453

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 143/416 (34%), Gaps = 56/416 (13%)

Query: 60  IPQAIAQG--AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  A+++G  A   V+              ++ P  ++DN  K                +
Sbjct: 67  IGNAMSRGNPAVEYVLDRNLP--------YTSGPQWLLDNLLK-------------DRWV 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK+S +S +  I + +G +   +     I    ++  ++           + +
Sbjct: 106 LAVAGTHGKTSTSSVLAWILEFAGYTPGFL-----IGGVPENFGVS-----------ARI 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  +  +         R   +  +       NL  DH D      A       L  
Sbjct: 150 GEGNFFVIEADEYDSAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLNAIKKQFHHLVR 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P     +    D   ++V++         +S     K    +K  A     +  +  
Sbjct: 210 S-VPANGLILSEKHDNNMQDVLEMGCWTTQEFIS-----KDWTAQKTQAD--GGRFEVYY 261

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+   +  + L G+  V+N L+A      +G+ + + +E L +   V  R E  GT + 
Sbjct: 262 QGQLQGEVNWSLIGDHNVHNGLMAIAAAHNVGVTTDIAIESLSEFVNVKRRMEIKGTVAN 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
              +Y D+AH   +++  ++ ++     + I+                 ++      AD 
Sbjct: 322 -ITVYDDFAHHPTAIKTTVEGLKANVGVQRILAILEPRSNTMKLGIHKDQLTESWAQADE 380

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + +    S   +++  + +  +  + +    +EA+   ++     D ++V   G
Sbjct: 381 VYIFEPASLSWSIDEVARDSVAPVHPYQDVDKLVEAV---VKEAQPSDHILVMSNG 433


>gi|329298860|ref|ZP_08256196.1| UDP-N-acetylmuramate--L-alanine ligase [Plautia stali symbiont]
          Length = 491

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 138/404 (34%), Gaps = 50/404 (12%)

Query: 89  NTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           + P LV    ++        + A  +  +H    +A+ GT GK++  + V  I    GL 
Sbjct: 91  DNPELVTAREQRIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTTTAMVTSIYAEGGLD 147

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              +      ++          S  YL   ++       + +                ++
Sbjct: 148 PTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL---------------HLQ 186

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +    TN+  DH+D +Q            F   LP    A++  DD   ++++ R    
Sbjct: 187 PMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDVVIRDLIPRVGR- 245

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
             +V + G+     + ++       +   T+  + K         PG     NA  A  +
Sbjct: 246 --QVTTYGFSDDADVRVENYEQRGAQSHFTLIRQDKPVLHVTLNAPGRHNALNAAAAVAV 303

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGG--RIYVDYAHTSNSLEMIL 373
               GID   +L  LE       RF+ +G       N + G   +  DY H    +++ +
Sbjct: 304 ASEEGIDDNAILAALESFQGTGRRFDVLGEFDTAAVNGKPGSAMLVDDYGHHPTEVDVTI 363

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPE 426
           K         ++++VF                  L   D+ ++ D  P  E      D  
Sbjct: 364 KAAHAGWPEKKLVMVFQPHRYTRTRDLFDDFANVLSQVDVLLMLDVYPAGEAAIPGADSR 423

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
            +   I +         +  EA+  A+  +L+  D+++V G G+
Sbjct: 424 SLCRAIRNRGKVDPILVSEHEALPDALAPLLSGDDLVIVQGAGN 467


>gi|152968673|ref|YP_001333782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330012009|ref|ZP_08307226.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
 gi|150953522|gb|ABR75552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328533998|gb|EGF60650.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
          Length = 438

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 154/400 (38%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIELF--------CREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDTDRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYEN----AKTCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +  +
Sbjct: 212 NADDALTMPV----RGADERCISFGVDVGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 307 P--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A 
Sbjct: 263 PLTGQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVLDHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D     +
Sbjct: 323 NVGSTEAALNGLQL--DGTLYLLL-GGDGKSADFTPLKRYLGGDRIRLYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPEVA------VQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|110801958|ref|YP_699716.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens SM101]
 gi|118595651|sp|Q0SQ91|MURD_CLOPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110682459|gb|ABG85829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens SM101]
          Length = 458

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +  F     G     +  VTG+ GK++  + V ++  + G  ++  G   T         
Sbjct: 108 MEEFVRYCKG----KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTP-------- 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L   +  +  +    V +E SS  L       +++     TN+  +H+D H+
Sbjct: 156 --------LFSNIEEIKEE--DKVVLELSSFQLMTM---DVEIDVAIVTNITPNHLDMHK 202

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             Q Y +AK  +F+    +    +I  ++  +K + K A     R  S   +G+  + K 
Sbjct: 203 DMQEYIDAKKNVFKYQ-RENDLLVINDENEITKNLDKEAKGKVVRFSSKKTEGEDAYYKD 261

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      + V GK+      +  +    V N L A        +    + +  E  
Sbjct: 262 ---------GKLYVHGKEVCKKDDIIIKGMHNVENYLAAFLAVYDE-VSIESMKKIAETF 311

Query: 340 HVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V  R EF+     G + Y D  A T       LK          +++   G D+    
Sbjct: 312 GGVHHRCEFI-REVDGVKYYNDSIASTPTRTLAGLKAFEK-----PVILLAGGYDKHVPF 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKG-NRIEAIRTA 452
            P+  +    +  I +           EKI+A     E   GI   +  G +  E +  A
Sbjct: 366 EPLAYEGYEKIKAIVLF------GVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVSIA 419

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             +    D++        +  +  N E +     +I+  I
Sbjct: 420 KSIAENGDII-TLSPACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|78778407|ref|YP_396519.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
 gi|78711906|gb|ABB49083.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 469

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 139/418 (33%), Gaps = 59/418 (14%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            VVSSA     ++FS   + N  I    +  + L++             LAV G+ GK+S
Sbjct: 79  FVVSSAIKPENEEFSYCRKKNLTI---KHRSEILAMLMQTY------TTLAVAGSHGKTS 129

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            ++F+  + +    +S  I     I  +  ++     +  +L   +              
Sbjct: 130 TSTFLSTLLELCTHNSSSI-TGGIIPIY--NSNCHLANTKFLVAEVDE------------ 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                     ++  K   G   N+  DH D+        ++    F++        ++  
Sbjct: 175 ------SDGTINKYKSDIGLINNIDFDHCDHFSDLGEVISS----FKDFAANSKKLLLNF 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPL 306
           D   ++      +N            K  +      I+    +    E  +F      P+
Sbjct: 225 DCVTTRSNFYSENNWSNIT-----ANKAAYAIIPTEINESHTIGKYYENGNFISSLDIPI 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + N   A      IG+D   + ++++ L +   RFEF G       +Y DYAH  
Sbjct: 280 PGLHNLSNITAAIAASRMIGVDFLEIKKNIKYLKLPKKRFEFRGQVDE-RNLYDDYAHHP 338

Query: 367 NSLEMILKNIRTI---------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           N ++  +K  R            +GR+I +F         +      + L  ADI  +T 
Sbjct: 339 NEIKATIKLGRLFINHKRNNESHNGRLIAIFQPHRYSRVKQFAKEFALELSKADIIYITS 398

Query: 418 DNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E  E       I   I           N  E  +   E+  K D+++  G G 
Sbjct: 399 IYAAGEGNEDNINSTIITDLIYKQNKNVSYINNYHEITKKFYELTQKGDLILNMGAGD 456


>gi|320539530|ref|ZP_08039197.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia symbiotica str. Tucson]
 gi|320030383|gb|EFW12395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia symbiotica str. Tucson]
          Length = 454

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 121/358 (33%), Gaps = 28/358 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A  V  + +  G     I     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMVTWVLEACGYQPGFI--IGGVPGNFEVSARLGGSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +           S                  +NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRAKFMHYS------------PRTLVMSNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+  +D + K+VM  A         VG +G +   K      +     + 
Sbjct: 209 -RLVPGKGKIILPDNDNHLKQVM--AMGCWSEQELVGEEGTWCAQK---LTPDASCYAVF 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + G+   +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LNGEQVGEVQWALVGEHNMHNGLMAIAATRHVGVQPADACRALGNFINARRRLELCG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLA 410
            G  +Y D+AH   ++   L  +R    G  RI+ V     +  +          +L  A
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRAKVGGTARILAVLEPRSNTLKMGISKHELAPSLGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D   +    P    P ++   +   +       +    +   ++     D ++V   G
Sbjct: 382 DEVFLFQP-PNI--PWQVAQVVESCVQPAHWSADLDILVEMIVKTTQPGDYILVMSNG 436


>gi|293408179|ref|ZP_06652019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
 gi|291472430|gb|EFF14912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
          Length = 438

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|254414291|ref|ZP_05028058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178966|gb|EDX73963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
          Length = 465

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 137/392 (34%), Gaps = 28/392 (7%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            L   S  +  + P+L+    R    +               + +TGT+GK++  + +  
Sbjct: 67  ELIVVSPGVPWDIPVLIEARNRGIDTIGEMELAWRYLKSSPWVGITGTNGKTTTTALIAA 126

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-LSSQGVTHVSVEASSHGL 194
           I Q +G  +   G    I   A +  L  P       +L   L    +  V  E SS+ +
Sbjct: 127 IFQAAGFHAPACG---NIGYAACELALAQPDKTRHGASLHEKLPQSKIDWVIAEVSSYQI 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +  R   +    G +T    DH++ H+T + Y+  K     +LL +    I   DD Y +
Sbjct: 184 ESSR--ELAPTIGVWTTFTPDHLNRHKTLENYYTIKA----DLLSRSHDQIFNGDDPYLR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++         +      +G+    +    I N   V +  E         + G     N
Sbjct: 238 QL---GTTHWSKAYWTSVKGRDATPRPWVYIENGW-VMVESEPIVPVDSLRMVGNHNQQN 293

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A       GI+   ++E +     VP R E + T      I    A   ++ ++ L 
Sbjct: 294 LLMAVAAARLAGIEKQAIVEAITNFPGVPHRLEHIITWQGIDFINDSKATNYDAAQVGLA 353

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            + +      +++   G  +       +  I    A + ++ +         +   E+  
Sbjct: 354 AVDS-----PVILIAGGEAKAGDDTQWLNAIQAKAAAVLLIGEAASAF---AQRLQEV-- 403

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQD--VLVV 464
           G   +        A+  A E+  + +  V+++
Sbjct: 404 GYFRYEIVETMARAVPRAAELAQQDNAPVVLL 435


>gi|262282143|ref|ZP_06059912.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus sp. 2_1_36FAA]
 gi|262262597|gb|EEY81294.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus sp. 2_1_36FAA]
          Length = 443

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 109/348 (31%), Gaps = 42/348 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVA 130
           + + Y +   +A    N   +   N             G    + ++    G  GK+S  
Sbjct: 59  IQADYEIIAGNAFRPDNNVEIAYANEHGISYKRYHEFLGSFMRDFVSFGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S                         G  +   E  
Sbjct: 119 GILSHVLSNITDTSYLIGDGTGRGS------------------------AGAKYFVFE-- 152

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S   ++H +          TN+  DH DY  + +  FNA     +++        IY +D
Sbjct: 153 SDEYERHFMPY-HPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQIT---KGLFIYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              + +   A      +   G++ +       +          +S  G++  +F  P  G
Sbjct: 209 EQLRRITSEAP-----IYYYGFEKENDFVAHDLLRSTTGSTFKVSYRGQELGEFHIPTFG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA    GL    G D  LV EHL+    V  RF     N  G  I  D+AH    
Sbjct: 264 RHNIMNATAVIGLLYVSGFDLDLVREHLKTFAGVKRRFTEKVVN--GTVIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   L   R    S  I+ +F                 AL+ AD   +
Sbjct: 322 IIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFADALNQADAVYL 369


>gi|168218219|ref|ZP_02643844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens NCTC 8239]
 gi|182379758|gb|EDT77237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens NCTC 8239]
          Length = 458

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +  F     G     +  VTG+ GK++  + V ++  + G  ++  G   T         
Sbjct: 108 MEEFVRYCKG----KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTP-------- 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L   +  +  +    V +E SS  L       +++     TN+  +H+D H+
Sbjct: 156 --------LFSNIEEIKEE--DKVVLELSSFQLMTM---DVEIDVAIVTNITPNHLDMHK 202

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             Q Y +AK  +F+    +    +I  ++  +K + K A     R  S   +G+  + K 
Sbjct: 203 DMQEYIDAKKNVFKYQ-RENDLLVINDENEITKNLDKEAKGKVVRFSSKKTEGEDAYYKD 261

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      + V GK+      +  +    V N L A        +    + +  E  
Sbjct: 262 ---------GKLYVHGKEVCKKDDIIIKGMHNVENYLAAFLAVYDE-VSIESMKKVAETF 311

Query: 340 HVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V  R EF+     G + Y D  A T       LK          +++   G D+    
Sbjct: 312 GGVHHRCEFI-REVDGVKYYNDSIASTPTRTLAGLKAFEK-----PVILLAGGYDKHVPF 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKG-NRIEAIRTA 452
            P+  +    +  I +           EKI+A     E   GI   +  G +  E +  A
Sbjct: 366 EPLAYEGYEKIKAIVLF------GITKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIA 419

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             +    D++        +  +  N E +     +I+  I
Sbjct: 420 KSIAENGDII-TLSPACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|322391677|ref|ZP_08065145.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus peroris ATCC
           700780]
 gi|321145488|gb|EFX40881.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus peroris ATCC
           700780]
          Length = 444

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 104/347 (29%), Gaps = 43/347 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+  +A+   +      ++   +      +FL  F            + V G  GK+S  
Sbjct: 65  IIAGNAFRPDNNVEIAYADKNGISYKRYHEFLGSFMRNFV------SMGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +   S      +                         E  
Sbjct: 119 GMLSHVLSHITDTSYLIGDGTGRGSENAKYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY  +    FNA     +++        ++ +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTSLDDVFNAFNDYAKQIT---KGLFVFGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              KE+ K   NA         +   I    +         T+   G++   F  P  G 
Sbjct: 209 ---KELRKITSNAPIYYYGFDAEKDDIVASNLLRSTTGSTFTVHHHGENLGQFHIPTFGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA    GL    G D  LV EHL+    V  RF     N     I  D+AH    +
Sbjct: 266 HNIMNATAVIGLLYTAGFDMDLVREHLKTFGGVKRRFTEKIVND--TVIIDDFAHHPTEI 323

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              L   R       I+ +F                 AL+ AD   +
Sbjct: 324 IATLDAARQKYPHKEIVAIFQPHTFTRTIALLDEFADALNQADAVYL 370


>gi|307826296|ref|ZP_07656503.1| UDP-N-acetylmuramate [Methylobacter tundripaludum SV96]
 gi|307732652|gb|EFO03522.1| UDP-N-acetylmuramate [Methylobacter tundripaludum SV96]
          Length = 450

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 111/350 (31%), Gaps = 32/350 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++ +A S  +       N  +  V          A  +     + +L V GT GK++  
Sbjct: 65  VIIGNALSRGNPEVEAVLNRGLRYVSGP----QWLAEHVLQD--KWVLGVAGTHGKTTTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I +  G +   +     I     +  ++           + L       +  +  
Sbjct: 119 SMLSWILEHQGFNPGFL-----IGGIPLNFGIS-----------ARLGESDFFVIEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLDAIKKQFHHLV-RTVPGEGLIISPE 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
            DA   +V+           S+    ++          +  +  + ++ ++     + L 
Sbjct: 222 CDANINDVLAMGCWTPVAKTSINSDAQWNA---QLINSDGSRFNVQMDNQEQGCVEWSLT 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VYNAL A      +GI     +  L +   V  R E V  +  G  IY D+AH   
Sbjct: 279 GEHNVYNALSAIVAAKHVGILPKDAIAALGRFKNVKRRME-VIASINGVTIYDDFAHHPT 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIV 415
           +++  L  +R       I+                  +A     AD+AI+
Sbjct: 338 AIQTTLDGLRKQVGQERIIAIVEPRSNTMRLGVHTKTLAESLGNADMAII 387


>gi|269302694|gb|ACZ32794.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 809

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 150/438 (34%), Gaps = 67/438 (15%)

Query: 50  VGNK-EDGHL--FIPQAIAQGAEAIVV---SSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
            G +   GH    +P       +A+VV   S A    ++   I+ +              
Sbjct: 48  KGARCFSGHDSSHVPH------DAVVVYSSSIAPDNVEYLTAIQRS------SRLLHRAE 95

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L +  + G      + V+G+ GK+  +S ++ I Q +        P+  I   A +    
Sbjct: 96  LLSQLMEGY---ESILVSGSHGKTGTSSLIRAIFQEAQKD-----PSYAIGGLAANCLNG 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 +  A +  S   + H                     A   TN+  +H++ +   
Sbjct: 148 YSGSSKIFVAEADESDGSLKHY-----------------TPHAVVITNIDNEHLNNYAGN 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKV 282
                  ++ F   +   +      D    K           + +S GY  +   H+   
Sbjct: 191 LDNLVQVIQDFSRKVTDLNKVFYNGDCPILK--------GNVQGISYGYSPECQLHIVSY 242

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   + +  G+++ D    LPG+    NA  A G+ +  GID  ++ + L+K   
Sbjct: 243 NQKAWQSHFSFTFLGQEYQDIELNLPGQHNAANAAAACGVALTFGIDINIIRKALKKFSG 302

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRP 400
           V  R E     S       DYAH    +   L+++R      R+I +F         +  
Sbjct: 303 VHRRLERKNI-SESFLFLEDYAHHPVEVAHTLRSVRDAVGLRRVIAIFQPHRFSRLEECL 361

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPG-------FIEKGNRIEAIRT 451
                A   AD  I+TD     E P +  I +++   I         ++  G+ ++ +R 
Sbjct: 362 QTFPKAFQEADEVILTDVYSAGESPRESIILSDLAEQIRKSSYVHCCYVPHGDIVDYLRN 421

Query: 452 AIEMLNKQDVLVVAGKGH 469
            I +    DV V  G G+
Sbjct: 422 YIRI---HDVCVSLGAGN 436


>gi|309801877|ref|ZP_07695993.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308221492|gb|EFO77788.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 288

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 110/291 (37%), Gaps = 19/291 (6%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-- 277
           H T + Y   K     +L       ++ AD  ++  + + A  AG  +     +      
Sbjct: 1   HPTFEDYLYCK----RQLAYHARAFVLNADADHADLIREDAQAAGIPLADFALRTDDAPT 56

Query: 278 --HLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              L    +       +I+  G D  +F   L G+F   NAL A  L    G+       
Sbjct: 57  NATLTARPSNAEHSAFSIAANGHDLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSAAM 116

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391
           H  +   VPGR E            VDYAH   S+  ++  +         RI +V G  
Sbjct: 117 HAMESVHVPGRMELFTGTDGDTVAIVDYAHNYTSVRALIDFVEQRYCERKPRITLVAGSA 176

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIE 447
           G++   +R  + + A D     + T ++  +E    I  E++  +           +R++
Sbjct: 177 GNKAFDRRQEIVEAAQDRIARFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVK 236

Query: 448 AIRTAIEMLNKQ---DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           AI +A+E  +     DV+++ GKGHE      N       D  ++  +L +
Sbjct: 237 AIESAVEQAHSHDGLDVILIIGKGHERWIKDLNSHVAYEGDDCVVERLLNV 287


>gi|323497893|ref|ZP_08102902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
 gi|323316938|gb|EGA69940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
          Length = 441

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 140/403 (34%), Gaps = 66/403 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            + VV +         +    K    ++A+TG++GKS
Sbjct: 71  ADLVVANPGIALATPEIQKTLEAGVAVVGDI-----ELFAWQVDKP---VIAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      + + +GL     G     +                      L  Q      +
Sbjct: 123 TVTDLAGVVAKAAGLQVGVGGNIGVPA--------------------LELLEQPADLYVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L A +F NL  DH+D +   + Y  AK+R+FE         I+ 
Sbjct: 163 ELSSFQLE--TTSSLNLKAAAFLNLSEDHMDRYDGMEGYRQAKLRIFEH----AESCIVN 216

Query: 248 ADD------AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           A D       +  E+++ +     +      Q +    +    I    ++T         
Sbjct: 217 AQDKATYPEHFKGELVEFSLTDKTQFSVQVQQNREYLCQDNLPILATDELT--------- 267

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   V NALV   L   +GID +  L  L+  + +  R + V  N  G +   D
Sbjct: 268 ----LVGRHNVANALVVLALLDCVGIDVSQGLSALKSYNGLTHRCQIVADN-HGVKWVND 322

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+ +  +   +  T+T    ++V G G   D     +   +A     +    +D   
Sbjct: 323 SKATNVASTLAALSGLTLTGKLYLLVGGVGKGADFS--ELAPVLAKLNVQLCCFGEDG-- 378

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   A+ +   P   +  +  E +  A   L   D++++
Sbjct: 379 --------AQFMALHPSAKQFTHMQEIVEWAKPQLTTGDMVLL 413


>gi|229588488|ref|YP_002870607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens SBW25]
 gi|229360354|emb|CAY47211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens SBW25]
          Length = 448

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 118/350 (33%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A++G++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APIVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  +    +E SS  L+      +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDIELYVMELSSFQLE--TTHDLGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ +M           + G          +   H ++ +   
Sbjct: 207 RG----AKQVVVNRQDALSRPLMGEGLPCW----TFGLSKPDFKAFGIREEHGEKYLAFE 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L     +  R ++V  +  
Sbjct: 259 FQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLSSLRTFGGLEHRCQWV-RDLD 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G   Y D   T+    +             +V+   G  +    + + G +A     + +
Sbjct: 318 GVSYYNDSKATNVGAALAAIEGLGADIEGKLVLIAGGDGKGADFKDLKGPVATHCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D + I A +   +P  +   +  +AI     +    D +++
Sbjct: 378 I------GRDSDLIAAALGDAVPQ-VRATSLDDAIAHCKALAQPGDAVLL 420


>gi|325130233|gb|EGC53003.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis OX99.30304]
          Length = 457

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 119/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL         G+D     E L     
Sbjct: 265 A----DGSFDVLLDGKKAGHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 321 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                ++L  A+            D +   AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPVSLKEANQVFC---YAGGVDWD--VAEALAPLGGRLNVGKDFDAFVAEIVKNART 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|317493281|ref|ZP_07951703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918674|gb|EFV40011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 438

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 146/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + ++ +   + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALASPALSVAAEAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G S    G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMAKSAGWSVGVGGNIGLPALM--------------------LLKQECDLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTTSLRAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            +DDA +  +      A  R +S G      HL +      + ++ + V G+        
Sbjct: 212 NSDDALTMPI----RGADSRCVSFGADVGDYHLNR-----QQGEIWLRVRGEKILNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+    NAL A  L  A+GI  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KITGKHNFTNALAALALADAVGIPRASSLKALTTFTGLAHRFQLSLDHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +      +   +  D   +     D    E 
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSSLAQYLQGDNVRLYCFGRD---GEQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRIIATRVKSGDMVLL 410


>gi|315931390|gb|EFV10359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Campylobacter jejuni subsp. jejuni 327]
          Length = 98

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNK 458
           MG I    A IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+   
Sbjct: 1   MGTIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKEN 60

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 61  DDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 94


>gi|310765081|gb|ADP10031.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia sp. Ejp617]
          Length = 491

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 122/406 (30%), Gaps = 44/406 (10%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           QD    + +    + V    + L+      +G      +AV GT GK++  + V  I   
Sbjct: 90  QDNPEVVAAREARIPVIRRAEMLAELMRFRHG------IAVAGTHGKTTTTAMVSSIYAE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            GL    +      ++          S  YL   ++       + +              
Sbjct: 144 GGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-------------- 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH+D +Q            F   LP    A++  DDA  ++++ R
Sbjct: 184 -HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVLCVDDAVIRDLIPR 242

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                                            +  +          PG     NA  A 
Sbjct: 243 V-GRQITTYGFSEDADVRVDNYHQQGAQGHFTLVRHDKPLMQVTLNAPGRHNALNAAAAV 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTSNSLEM 371
            +     I+   +L  LE       RF+F+G         ++    +  DY H    +++
Sbjct: 302 AVATEENIEDEDILNALESFQGTGRRFDFLGEYPLALSNGSAGTAMLVDDYGHHPTEVDV 361

Query: 372 ILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----- 425
            +K  R       ++++F                  L   D+ ++ D     E P     
Sbjct: 362 TIKAARAGWPDKNLVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIAGAD 421

Query: 426 -EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              +   I   G    I   +    +   +  L   D+++V G G+
Sbjct: 422 SRALCRTIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQGAGN 467


>gi|169824784|ref|YP_001692395.1| folylpolyglutamate synthase [Finegoldia magna ATCC 29328]
 gi|167831589|dbj|BAG08505.1| folylpolyglutamate synthase [Finegoldia magna ATCC 29328]
          Length = 415

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 133/381 (34%), Gaps = 47/381 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ V GT+GK S ++F+ Q  +  G  +        I+ + +       S     +   
Sbjct: 40  KIIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFMRIFE 99

Query: 176 -------------------------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                                    Y + Q   +V +E    G         + +    T
Sbjct: 100 IIKDTIEKNDIKVSTFEFITLCAIYYFAEQKCEYVVLEVGMGGRLDATNATDETLLSVIT 159

Query: 211 NLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            +G DH +Y   T +     K  + ++        ++Y       +V +         L 
Sbjct: 160 KIGLDHQEYLGNTLEEIAYEKACIMKQ----NGRCVVYDQQESVLDVFREVAEERNNKLY 215

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI----AI 325
           +    +  +++     +       S + K+      L G +Q++NA +A          +
Sbjct: 216 ICDFDEAKNIEINATHN-------SFDWKNLHIETRLVGRYQLFNAQLALTAIDVLRDEL 268

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    ++   +  + +P RF+ +        +  D  H ++ ++  LK+      G   
Sbjct: 269 DLSDEDIINGFKNAY-IPARFDVI---RHNPTVIYDGGHNADGVKA-LKSSIESVFGDKK 323

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +VF  G  +D+     +  I  +       T D+PR+   E ++ +I       + K N 
Sbjct: 324 IVFVYGVLKDKDYNDEIKLIHENAKAFVTFTPDSPRALKAEDLKKQIEVYSDNVVAKSNV 383

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A+  AIE   K DV+++ G
Sbjct: 384 NDAVDYAIEHF-KDDVIIIFG 403


>gi|168048570|ref|XP_001776739.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671888|gb|EDQ58433.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 680

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 84/504 (16%), Positives = 151/504 (29%), Gaps = 97/504 (19%)

Query: 56  GHLFIPQAIAQGA---EAIVVSSAYSL--QDFSATIRSNTPILV----VDNTRK-----F 101
           GH  + Q + QG+   +A+VVSSA     ++  A    N PI++     +++       +
Sbjct: 167 GHS-VAQLVPQGSQPPDAVVVSSAVGPGNEEVEAARALNVPIILERPHANDSESGWHFPY 225

Query: 102 LSLFASRLYGKH------PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
                S   G           ++AV GT GK++  + +  + +  G     I        
Sbjct: 226 AGRSCSYKRGDWLGKITEGYQLIAVAGTHGKTTTTAMLSVVLRNLGEDITAI--VGAQVP 283

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
              D               S +      H   EA  +        G+       TN+  +
Sbjct: 284 QFPDGGSALCGTTRKFVLESQVRPVLWFHKFSEADEYD---GCFLGVSPHLAVLTNVEWE 340

Query: 216 HIDYHQ----------------------TQQAYFNAK----MRLFEELLPKESPAIIYAD 249
           H+D                         + +           + F   +      +   D
Sbjct: 341 HVDMFPDERGCLLNVTPSIDLFDQPLIVSMENILQEAVKNMFKKFVLQIKPGGCLVACGD 400

Query: 250 DAYSKEVMKRAHNAG-----------CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEG 297
            A +K V+                   RV++ G          +          T+  + 
Sbjct: 401 SAGAKSVLGLIEEEQEKDLGSPFPRERRVVTFGLGASDWRAIMLVPNPQGGTDYTVVYKN 460

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL---------------EHLEKLHV 341
           +        LPG + V N+L    +   +  +    +                 L     
Sbjct: 461 RPMTRVSLRLPGMYNVLNSLAVIVVMSLLAAEKESDVGAQAKLMKRTAEAAGRALGAFSG 520

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRP 400
           V  RF+FVG +  G  I  DYAH    +  +L+  R       I V+F            
Sbjct: 521 VRRRFDFVG-SVHGCHIIDDYAHHPTEVRAVLQAARQRYDQQPIWVIFQPHTVSRLAAFL 579

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP-EKIR--AEIIHGI--PGFIEKGNRIEAIRT---- 451
                A   AD  IVT        P EK+    ++ + I  P  +   +    +      
Sbjct: 580 PDFAPAFSAADRVIVTQVYAARNIPTEKVVTGEDLANAIIGPPAVYIPDLDVVVERLSWE 639

Query: 452 --AI---EMLNKQDVLVV-AGKGH 469
             A+   EM ++ +++++  G G 
Sbjct: 640 LAALDKNEMNDRGNIVLLTLGAGD 663


>gi|114798168|ref|YP_761703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hyphomonas
           neptunium ATCC 15444]
 gi|114738342|gb|ABI76467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 471

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 133/409 (32%), Gaps = 55/409 (13%)

Query: 69  EAIVVSSAYSLQDFSA------TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            A+V+S     +             +  P++      +  +     L  +    ++AVTG
Sbjct: 67  AALVLSPGIPFKFPQPHRLVRMAEMTGVPVI---GDMELFARAVQALPERARPKVVAVTG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  + +  I +++G  +   G   T                     L   +    
Sbjct: 124 TNGKSTTTALIGHILKQAGRDARVGGNIGT-------------------GVLDLAALHSN 164

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS+ LD   +  +      F NL  DH+D H     Y  AKMR+F+    K  
Sbjct: 165 AIYVLELSSYQLDL--VKSLHCDVSVFMNLSPDHLDRHGGMDGYQAAKMRIFQNQTDKN- 221

Query: 243 PAIIYADDAYSKEV-----MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            A+I  DD Y++ +      K          +         +      +   +       
Sbjct: 222 VAVIGFDDIYTQSIAIGLSAKGPQKVVQISSTYTLGKGISAVDGRLYDNQSGKAEFV--- 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    L G     NA  A   C A+G+D A ++  L     +  R E VG    G R
Sbjct: 279 GKLDECPALIGRHNHQNAAAAYAACRALGLDPATIMAGLRTFPGLAHRMEAVG-ELDGIR 337

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              D   T+   +   + +R+  +   I           G  P    IA   +    VT 
Sbjct: 338 FINDSKATNA--QAAEQALRSFKNIYWIA----------GGVPKAEGIAPLASLFPNVTK 385

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKG-NRI--EAIRTAIEMLNKQDVLV 463
                +  +   A +   +P  +    +R    A R A        V++
Sbjct: 386 AYLIGQAEDAFAATLNGKVPSQVCGSLDRAVEAAYRDAKAAGEPGAVIL 434


>gi|294142404|ref|YP_003558382.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shewanella violacea DSS12]
 gi|293328873|dbj|BAJ03604.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shewanella violacea DSS12]
          Length = 476

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 117/373 (31%), Gaps = 42/373 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LA++GT GK+S +S +  I +  G     +     I    Q+  ++           
Sbjct: 107 RWVLAISGTHGKTSTSSMLAWILEDCGYEPGFL-----IGGVPQNFGVS----------- 150

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L +     V  +         R   +   A      NL  DH D     +A    +  
Sbjct: 151 ARLGNSPFFVVEADEYDSAFFDKRSKFVHYQARTLVINNLEFDHADIFDDLKAIQR-QFH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--------------SVGYQGKFIH 278
                +P E   I   D    ++V+     +   V               S G       
Sbjct: 210 HVIRTVPGEGKIIWPKDCEAVQQVIDMGCWSEQEVYAGNCADLVSVNKGSSAGDNKGTWS 269

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            + + A     +  +  +G+    L + L G+  V NA +A      +G+     ++ L 
Sbjct: 270 SQLIAAD--GHKFELFFDGESQGILDWALIGQHNVENATMAIAAARHVGVKPLAAIQALA 327

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +      R E +GT  +G  +Y D+AH   ++   L+  R       I +          
Sbjct: 328 QFEPPKRRMELIGT-IKGIDVYDDFAHHPTAIATTLQGCRAKVGEAKITIILEPRSNTMK 386

Query: 398 KRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                  +A  +  AD A +   +        I A +           +  E +      
Sbjct: 387 SGVHKDTLANSMSLADEAYLYQGDS---IDWDIEAAMEKAELPVSVLYDIDEIVAAVANK 443

Query: 456 LNKQDVLVVAGKG 468
            N  D ++V   G
Sbjct: 444 ANSGDTIIVMSNG 456


>gi|254751530|ref|ZP_05203567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Vollum]
          Length = 243

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L     K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 1   MNL-----KKFEEVINGEGLH-ESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       +     PI+ VD+T   L   A     +    ++ 
Sbjct: 53  VKEAMDNGAIASLWKKSYG------SPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIG 106

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNR 161
           +TG++GK++    V+ I        +  G  + QIG   TI    +D  
Sbjct: 107 ITGSNGKTTAKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTE 155


>gi|227815000|ref|YP_002815009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
 gi|227004988|gb|ACP14731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
          Length = 246

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L     K F E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 4   MNL-----KKFEEVINGEGLH-ESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEY 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       +     PI+ VD+T   L   A     +    ++ 
Sbjct: 56  VKEAMDNGAIASLWKKSYG------SPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIG 109

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNR 161
           +TG++GK++    V+ I        +  G  + QIG   TI    +D  
Sbjct: 110 ITGSNGKTTAKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTE 158


>gi|118594410|ref|ZP_01551757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
 gi|118440188|gb|EAV46815.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
          Length = 481

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 133/398 (33%), Gaps = 34/398 (8%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   S  +  A  +      VV++   FL       +      I+ VTGT+GK++ 
Sbjct: 88  CIVLSPGISFSEIKAIAQGKD---VVNDIFLFLKFIEKNNHRVKNLKIIGVTGTNGKTTT 144

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F++ + +  G++    G          D+       I    +   L            
Sbjct: 145 CFFLEHLYKSLGVNVRVAGNIGLSPLELIDDLDYIEIIILEISSFQLLPF---------- 194

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S GL       +KL  G   NL  DH+D H+  + Y+  K  L      K +       
Sbjct: 195 ISKGL------PVKLDVGILLNLSPDHLDIHKNMEEYYQTKAELLRS--SKRTVVSHNLG 246

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPG 308
              S E    +   G   +S         +K        ++     +G   +     + G
Sbjct: 247 LNTSTEFTDISFGEGFEEVSKINNNGKSLIKYRQYFQYNKKYIFDDQGFRVEINKLKITG 306

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-- 366
              + N          +G  S  +   L +   +P R E+V   +      VDY + S  
Sbjct: 307 GHNLLNITAGIAAFRVLGGSSNRLKNILAEFKGIPHRIEWVRLLND-----VDYFNDSKG 361

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            ++   +  +      + I++   G  + Q   P+   I  ++  + ++  D    E+  
Sbjct: 362 TNVASTVAALENFRDKKNIILIAGGESKGQSLLPLRDHIKRNVTHLLLIGKDAKLFEEC- 420

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +II      +   +  +A+  A     K  V+++
Sbjct: 421 --FKDIIT--TQIVRYESMDDAVCHAYRFARKHGVILL 454


>gi|313158276|gb|EFR57678.1| UDP-N-acetylmuramate--L-alanine ligase [Alistipes sp. HGB5]
          Length = 460

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 130/423 (30%), Gaps = 50/423 (11%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F+  A    A  +V + A   +        +     V+   + L   A   Y      
Sbjct: 62  AEFLDPA----ATMVVYTPAVPQEHGEYQYFVSHGF-CVEKRSQMLGHLAEGKY------ 110

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AV GT GK++ ++ V  +           G T   S+F           + L      
Sbjct: 111 VMAVAGTHGKTTTSTLVAWL---------NRGVTGGGSAFLGGISKNFGGNLVLGAGARL 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                    S               +       T+   DH+D + T +A   A  +   +
Sbjct: 162 AVEADEFDRSFL------------RLYPDVAVITSADADHLDIYGTHEAVKEAFSQFVRQ 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           + P     I         +++           S      F             +  I   
Sbjct: 210 IRPGGFLII-----KEGVDIVLDNPQITVYRYSYDVPCDFYARNVQLLEGGHYRYDIVTP 264

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGL------CIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           G   +     +PG   + N++ AA             +D+  + E L     V  RFEF 
Sbjct: 265 GGVVEGCTLGIPGWVNIENSVAAAASVWCAAQAEGTTLDAERLREALASFAGVKRRFEFY 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALD 408
             N+       DYAH    L   L ++R +  GR I  +F                 AL 
Sbjct: 325 -VNTPKQVYMDDYAHHPRELAATLTSVRKMFPGRRITALFQPHLYTRTRDLYREFAEALS 383

Query: 409 LADIAIVTDDNPRSEDP-EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            AD  ++    P  E+P E + +EII  G+        R  A+   +      DV+V  G
Sbjct: 384 HADDVVLLPIYPAREEPIEGVTSEIIAQGVTVPCRIVERA-ALADTVA-AMDTDVVVSFG 441

Query: 467 KGH 469
            G+
Sbjct: 442 AGN 444


>gi|188532903|ref|YP_001906700.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia tasmaniensis
           Et1/99]
 gi|188027945|emb|CAO95802.1| UDP-N-acetylmuramate-alanine ligase [Erwinia tasmaniensis Et1/99]
          Length = 500

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 133/408 (32%), Gaps = 48/408 (11%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           QD    + +    + V    + L+      +G      +AV GT GK++  + V  I   
Sbjct: 99  QDNPEVVAAREARIPVIRRAEMLAELMRFRHG------IAVAGTHGKTTTTAMVSSIYAE 152

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            GL    +      ++          S  YL   ++       + +              
Sbjct: 153 GGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-------------- 192

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E++ R
Sbjct: 193 -HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVLCVDDTVIRELIPR 251

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALV 317
                 ++ + G+ +   + ++       +   T+  + K         PG     NA  
Sbjct: 252 VGR---QITTYGFSEDADVRVENYRQRGAQGHFTLVRQDKPLMQVTLNAPGRHNALNAAA 308

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTSNSL 369
           A  +     ID   +L  LE       RF+F+G         ++    +  DY H    +
Sbjct: 309 AVAVATEENIDDEDILAALESFQGTGRRFDFLGEYPLAQVNGSAGTAMLVDDYGHHPTEV 368

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425
           ++ +K  R       ++++F                  L   D+ ++ D     E P   
Sbjct: 369 DVTIKAARAGWPDKNLVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIPG 428

Query: 426 ---EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                +   I   G    I   +    +   +  L   D+++V G G+
Sbjct: 429 ADSRSLCRTIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQGAGN 476


>gi|332673458|gb|AEE70275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Helicobacter pylori 83]
          Length = 493

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDKSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  Q     I+      T +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +F   + G+F  YN   A  +   +G+++  +   + + + +  R + +  N + 
Sbjct: 325 GSVWENFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR I+V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKIIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|301026104|ref|ZP_07189579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
 gi|300395675|gb|EFJ79213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
          Length = 438

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKICVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|254563999|ref|YP_003071094.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens DM4]
 gi|254271277|emb|CAX27289.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens DM4]
          Length = 455

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 102/324 (31%), Gaps = 47/324 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATI------RSNTPIL----VVDNTRKFLSLFASRLYGKHPEN 116
           G  A+V++    L             ++  PI+    +    R  L+             
Sbjct: 65  GFSALVLAPGVPLTHPEPHWTVELARKAGIPIIGDIEIFCRERTALA---------PDAP 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TGT+GKS+  +    + + +G      G   T                     LS 
Sbjct: 116 FVAITGTNGKSTTTALTAHLLRHAGRDVQMGGNIGT-------------------AILSL 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VE SS  +D      +K   G   NL  DH+D H T + Y   K RL   
Sbjct: 157 EPPAANRVHVVELSSFQIDL--TPSLKPGVGILLNLTPDHLDRHGTMENYAAIKERLVAG 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  A+I  DD Y   + +R      R+   G+                    +   
Sbjct: 215 ----ADLAVIGVDDPYCAAIAERRTGERIRLHVEGHGDAAGDYVGANGTVRGPDGAVIA- 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +   +  L G+  + NA  A    I +G+  A +   L+    +  R E +       
Sbjct: 270 --EVTGIQALLGDHNLQNAAAAVAAAIRLGLSGAEIAAGLKSFPGLAHRMEPLRRIGPTL 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT 380
            +    A  ++S E  L   R I 
Sbjct: 328 FVNDSKATNADSTEKALLAFRDIH 351


>gi|238893068|ref|YP_002917802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545384|dbj|BAH61735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 438

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 154/400 (38%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIELF--------CREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDTDRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTFSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYEN----AKTCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +  +
Sbjct: 212 NADDALTMPV----RGADERCISFGVDVGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 307 P--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A 
Sbjct: 263 PLTGQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVQEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D     +
Sbjct: 323 NVGSTEAALNGLQL--DGTLYLLL-GGDGKSADFTPLKRYLGGDRIRLYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPEVA------VQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|292489356|ref|YP_003532243.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora CFBP1430]
 gi|292898420|ref|YP_003537789.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia amylovora ATCC
           49946]
 gi|291198268|emb|CBJ45374.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia amylovora ATCC
           49946]
 gi|291554790|emb|CBA22612.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora CFBP1430]
 gi|312173521|emb|CBX81775.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 491

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 123/407 (30%), Gaps = 46/407 (11%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           QD    + +    + V    + L+      +G      +AV GT GK++  + V  I   
Sbjct: 90  QDNPEVVAAREARIPVIRRAEMLAELMRFRHG------IAVAGTHGKTTTTAMVSSIYAE 143

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            GL    +      ++          S  YL   ++       + +              
Sbjct: 144 GGLDPTFVNGGLVKAAGTH---ARLGSSRYL---IAEADESDASFL-------------- 183

Query: 200 DGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
             ++ +    TN+  DH+D YH   +         F   LP    A++  DDA  ++++ 
Sbjct: 184 -HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVLCVDDAVIRDLIP 241

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R                                 +  +          PG     NA  A
Sbjct: 242 RV-GRQITTYGFSDDADVRVENYQQLGAQGHFTLVRHDKPLMQVTLNAPGRHNALNAAAA 300

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTSNSLE 370
             +     I+   +L  LE       RF+F+G         ++    +  DY H    ++
Sbjct: 301 VAVATEENIEDEDILNALESFQGTGRRFDFLGEYPLAPVNGSAGTAMLVDDYGHHPTEVD 360

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP---- 425
           + +K  R       ++++F                  L   D+ ++ D     E P    
Sbjct: 361 VTIKAARAGWPDKNLVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGESPIAGA 420

Query: 426 --EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               +   I   G    I   +    +   +  L   D+++V G G+
Sbjct: 421 DSRALCRTIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQGAGN 467


>gi|319897397|ref|YP_004135594.1| udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Haemophilus
           influenzae F3031]
 gi|317432903|emb|CBY81269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3031]
          Length = 437

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 127/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIELF--------CRTATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N     +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---RLTFGENENQAKHTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+     + G R   D   T+    
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLAHH-ANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     +++ G G   D      + ++      I           D      
Sbjct: 328 VAALAGLYIEGKLHLLLGGDGKGADFS---ELAELINQPHIICYC-----FGRD----GV 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   D++++
Sbjct: 376 QLAKFSSQSYLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|169350228|ref|ZP_02867166.1| hypothetical protein CLOSPI_00972 [Clostridium spiroforme DSM 1552]
 gi|169293011|gb|EDS75144.1| hypothetical protein CLOSPI_00972 [Clostridium spiroforme DSM 1552]
          Length = 436

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 95/267 (35%), Gaps = 19/267 (7%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+  DH+DY    + Y  +  +   ++   +   I++ DD   K++     N 
Sbjct: 162 PNYAIINNIELDHVDYFGNLERYIESFEKFANQV---KDTVIVWGDDPNIKKI-----NF 213

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
             RV+  G      +    V   +      + +  + F  F  P  G   +YN+L    L
Sbjct: 214 EKRVMRFGLNDYNDVRAVNVIENNLGFSFDVYIHNELFGHFNLPFFGNHMLYNSLAIITL 273

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                +DS  + + L        R+      +       DYAH   +++ +++  R    
Sbjct: 274 GYLENMDSEYIQDKLSTFQGTKRRYSVTEVGNNIY--VDDYAHHPTAIKYVIEATRVRYP 331

Query: 382 GRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI-RAEIIHGIP 437
           G+ IV VF         +  +    A+DLAD        +N   E+   I   +I   +P
Sbjct: 332 GKKIVAVFKPDRFSRGARFAVEFARAMDLADYPYFCPFPENAVKEEGIDIDIYDIAKNLP 391

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    EA   A E+    DV+ +
Sbjct: 392 RAKVINEDQEA---AKELAQYDDVVFL 415


>gi|167622393|ref|YP_001672687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352415|gb|ABZ75028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 439

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 138/394 (35%), Gaps = 54/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S   + +     +  +  I V+ +         +R   +    ++ +TG++GK++V 
Sbjct: 70  IIISPGIACETPEVRVAFDMGIEVIGDV-----ELFAREVSQGSAKVIGITGSNGKTTVT 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +  G S    G                        AL  L      ++ +E S
Sbjct: 125 TLVGEMAKACGCSYAVGGNIGV-------------------PALDLLLEPKELYI-LELS 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      ++  A +  N+  DH+D +   ++Y  AK++L+++        +   +D
Sbjct: 165 SFQLE--TTHSLQCTAATCLNISEDHMDRYSDLESYRQAKLKLYKQ----SKMVLFNRED 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A +        N      S G     +    +        +              L G  
Sbjct: 219 ALT------VPNNPTNQESFGLDAPEMDAWGIS----GGMIVHGSSQIMAVSDVALVGSH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N + A  L  A GI+    +E  +    +  R E V   +  G  YV+ +  +N + 
Sbjct: 269 NHANIIAAMALATAAGIERDFQIEVAKTFSGLAHRCEVVAEIA--GVTYVNDSKATN-IG 325

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  I  ++     ++   GGD        +  +   ++ + ++  D            
Sbjct: 326 ATVAAIDGLSEHLGELILIAGGDGKGADFKPLEPVLEKVSQLIVLGKD----------AD 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +I    P  I+     EA+  A E+    D++++
Sbjct: 376 KIAALKPEAIKVTTMAEAVLKANELATAGDIVIL 409


>gi|163790758|ref|ZP_02185184.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7]
 gi|159873938|gb|EDP68016.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7]
          Length = 442

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 107/328 (32%), Gaps = 42/328 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    L+
Sbjct: 105 NSVAVTGSHGKTSTTGLLAHVLSSLKDTSYLIG-DGTGHGVPDADFFILEACEYRRHFLA 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y                          +      TN+  DH DY+ +    FNA    F+
Sbjct: 164 Y--------------------------RPDYAIMTNIDFDHPDYYSSIDDVFNA----FQ 193

Query: 236 ELLPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +  +   AI+   DD   +++     N        G    F   K +          + 
Sbjct: 194 SMAVQVKKAIVACGDDEQLQKIQA---NVPILYYGFGDHNDFQ-AKNMTRSTTGSTFDVY 249

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V  + +  F  P  G+  + NAL    +C    ID   V+E+L+    V  RF       
Sbjct: 250 VRDEFYGHFDIPTFGKHNILNALSVIAICQYENIDKEGVMENLKTFKGVKRRFTEKQILD 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               I  DYAH  + +   +   R       II +F                 +L+LAD 
Sbjct: 310 M--VIIDDYAHHPSEIRATIDAARQKYPDKEIIAIFQPHTFTRTVALLSDFAESLNLADS 367

Query: 413 AIVTDDN-PRSEDPEKI-RAEIIHGIPG 438
             + D      E+   I   ++   I  
Sbjct: 368 IYLCDIFGSVRENQGDITIQDMADKIDN 395


>gi|37678799|ref|NP_933408.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio vulnificus YJ016]
 gi|44888162|sp|Q7MNV0|MURC_VIBVY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|37197540|dbj|BAC93379.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus YJ016]
          Length = 486

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 141/432 (32%), Gaps = 56/432 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFSA-----TIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113
             +GA+  +   A ++ + S       I    P +      +        + A  +  +H
Sbjct: 64  AQKGAKVYIGHQATNVAEASVVVVSTAINEANPEVKAAREARIPVVRRAEMLAELMRFRH 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + V QI   +GL    +      S+       ++         
Sbjct: 124 G---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RIL 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                ++ +    TN+  DH+D +             
Sbjct: 175 IAEADESDASFL---------------HLQPMVCIVTNIEADHMDTYGGDFETLKQTFID 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    AI+  DD   +E++ R      +V++ G+      ++        QQ   
Sbjct: 220 FLHNLPFYGQAIVCIDDPVIRELIPRISR---QVITYGFSEDA-DVRIENYHQEGQQGKF 275

Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +V   + +  D    +PG     NA  A  +     I    +L  +        RFE +G
Sbjct: 276 TVVRKDCEALDITLNIPGRHNALNAAAAIAVATEDEIGDDAILAAMIGTQGTGRRFEHLG 335

Query: 351 ---TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              T +    +  DY H    +++ +   R      R++++F                  
Sbjct: 336 EFETGNGNVMLVDDYGHHPTEVDVTIHAARNGWQDKRLVMIFQPHRYSRTRDLYDDFANV 395

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLN 457
           L+  D+ ++ D     E    I       +   I    +I+ I  A           +L 
Sbjct: 396 LEQVDVLVMLDVYAAGEK--AIAGADSRSLCRTIRSRGKIDPIFVADTQQLPEVLANILQ 453

Query: 458 KQDVLVVAGKGH 469
           + D+L+  G G 
Sbjct: 454 EGDLLLAQGAGD 465


>gi|239832311|ref|ZP_04680640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824578|gb|EEQ96146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           intermedium LMG 3301]
          Length = 467

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 134/411 (32%), Gaps = 62/411 (15%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--------ASRLYGKHPENILAV 120
            A V+S    L           P   VD  R                R +       +A+
Sbjct: 67  AAFVLSPGVPLTHPK-------PHWTVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  I + SG      G   T                     L+    Q
Sbjct: 120 TGTNGKSTTTALIAHIIKASGRDMQLGGNIGT-------------------AILTLEPPQ 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ +D      +   AG   NL  DH+D H + + Y   K RL       
Sbjct: 161 ANRFYVVECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAA---- 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGK 298
              AI+  DD Y + +  R +  G  V+ +  + +    +      +   Q   +  E  
Sbjct: 215 SDTAIVGVDDQYCEAIADRLYRDGVHVVRISKEKQLGKGYFADGAKLLWAQDGEVD-EIA 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + +  L G     NAL A   C+++G+    +   L     +  R E VG   RG  +
Sbjct: 274 SLEGIGSLRGAHNAQNALAAIAACLSVGLSLEEIHAGLNSFPGLAHRMEQVG--HRGKVL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +V+ +  +N+ E     + +       +          G  P  G IA   A    +   
Sbjct: 332 FVNDSKATNA-EATAPALSSFPQNIYWI---------AGGVPKAGGIASLAAFFPRIAKA 381

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLN----KQDVLVV 464
               E   +  A +  G     E  +    A+  A          + V+++
Sbjct: 382 YLIGEAAAQFAATL--GDAAPFEISDTLAVAVEHAARDAGNDAAPEPVVLL 430


>gi|323970760|gb|EGB66014.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TA007]
          Length = 438

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPHASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|170017481|ref|YP_001728400.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc citreum KM20]
 gi|229620040|sp|B1MZK4|MURC_LEUCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169804338|gb|ACA82956.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc citreum KM20]
          Length = 444

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 90/300 (30%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G  GK+S    +  + +    +S+ IG  +       +++          +     
Sbjct: 107 IAVAGAHGKTSTTGLLAHVVKNIAPTSYLIGDGT--GRGVPNSQFFVVEADEYRRHFKDY 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY++       A    F   
Sbjct: 165 -------------------------APDYAILTNIDFDHPDYYEDINDVTRA-FSDFANH 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K+  A  + DD Y + +  +A            +        +          +   G
Sbjct: 199 VKKDIFA--WGDDPYLRLLQPKA---DVYYYGTNSEQDDFVATNIRKSTQGSHFDVVFRG 253

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   +F  PL G+  + NAL    +     +D +L+   L     V  RF          
Sbjct: 254 QSLGEFSVPLFGQHSILNALSVIAVAYMEKMDLSLIKSFLMTYQGVKRRFSEKQIAD--I 311

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    ++  L   R    + +II +F                 +L+ AD   +
Sbjct: 312 TVIDDYAHHPTEIDATLDAARQKYPNKQIIAIFQPHTYSRVIAYKDEFAKSLEAADKVYL 371


>gi|303233989|ref|ZP_07320638.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
 gi|302494914|gb|EFL54671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
          Length = 441

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 136/386 (35%), Gaps = 41/386 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           S  IR + P+++  N            A R++G     I+A+TGT+GK++  S + ++  
Sbjct: 64  SPGIRMDNPVILKANELNIEVVSDLELAQRIFGDI--KIVAITGTNGKTTTTSLMTKMLN 121

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            SG  +  IG          +   +     ++                +E SS  L+   
Sbjct: 122 DSGRKAISIGNIGV--GMLWEIYNSDKDTYFV----------------IECSSFQLES-- 161

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K       N+  DHID+H + + Y NAK  + +    +    ++ ADD Y +E  K
Sbjct: 162 TKHFKPQYSCIINITPDHIDWHGSMKNYVNAKKNVLKNQ-DENCYTVLNADDEYYEECKK 220

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   + +     +   +K      +       ++ KD      L G     N L  
Sbjct: 221 FTKANIYDISTSKNIERGSFIKDNSIYFSDSYCDKIIDLKD----VKLIGYHNYQNVLFC 276

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L   IGI+   + E L     V  R EFV      G  Y + +  +N ++  +K I +
Sbjct: 277 VTLAKLIGINDDSIRETLMSFSGVEHRLEFV--RDLSGVKYYNDSKGTN-VDASVKAIES 333

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                 +++   G D+                 + ++       E   K      +G   
Sbjct: 334 FDKN--VIILAGGYDKKVSLDNFFIAGKDKFKALILMGQTRDLFEQKAK-----EYGFKN 386

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  +A+  A ++    DV+++
Sbjct: 387 IYLVDDMKQAVTQANKIAESGDVVLL 412


>gi|241758801|ref|ZP_04756914.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria flavescens SK114]
 gi|241321009|gb|EER57222.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria flavescens SK114]
          Length = 472

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 122/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 109 QWLAENVLHQH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 161

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 162 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFAD 221

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +    H  +V
Sbjct: 222 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQV 274

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 275 GGVNVDGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDIQTACEALSAFKN 334

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 335 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 393

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                 +L+ AD            D +   AE +  + G +  G   +  +   ++    
Sbjct: 394 KAALPASLNDADQVFC---YAGGVDWD--VAEALAPLGGKLHVGKDFDTFVAEIVKNAEA 448

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 449 GDHILVMSNG 458


>gi|332300479|ref|YP_004442400.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177542|gb|AEE13232.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 457

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 106/359 (29%), Gaps = 47/359 (13%)

Query: 82  FSATIRSNTPIL--------VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++  I  + P L         V    + L + A           LAV G+ GK++  + +
Sbjct: 72  YTPAIPHDHPELCYLRSHHFRVLKRAEALGVIAENY------RTLAVAGSHGKTTTTNML 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I   +     ++G T+ I   A D                        H  +      
Sbjct: 126 SHILDGA----QEVGCTAFIGGLAVDTGSNFIYS---------------DHSDLLVVEAD 166

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   +       T+   DH+D +     Y  A    F   +  E   ++       
Sbjct: 167 EYDRSFLHLNPYMAVVTSTDADHLDIYGDYAGYL-AGFEQFCSQIEPEGTLLMKEGLPIK 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPG 308
             + +     G R L+ G+            + +   +       +           +P 
Sbjct: 226 PHLAE-----GVRTLTYGHAPTADAYYDHVTVGDGT-IRFDWHYPEAGLHLEQVRLGVPV 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA  A  +    G+    ++  +E       RFE V    R   +  DYAH    
Sbjct: 280 RTNLENATAAMTIAYLNGVAPDDIVRGVESFRGTKRRFELVLQTDRH-LLIDDYAHHPVE 338

Query: 369 LEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           L+  +++I+ I     ++ +F                 +L   D  IV D  P  E+P 
Sbjct: 339 LDSSIRSIKEIYGSEDVLAIFQPHLYSRTADFYKEFAQSLSHVDQVIVLDIYPAREEPM 397


>gi|323699053|ref|ZP_08110965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           ND132]
 gi|323458985|gb|EGB14850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans ND132]
          Length = 434

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 135/416 (32%), Gaps = 76/416 (18%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           +VG  E GH F        A+ IV+S    ++  +  +       VV         FAS 
Sbjct: 66  VVGPHEKGH-FAD------ADVIVLSPGVPVRKLAPVLEGVPARNVVSEL-----EFASW 113

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   ILAVTG++GK++  + + +I +++G   F  G                    
Sbjct: 114 FIE---APILAVTGSNGKTTTTTLISEILEKAGRRVFTGGNIGVP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L + L  L  +    + +E SS  L        K   G F N   +H+DYH     Y +
Sbjct: 156 -LCEYL--LDMEPAEIIVLEVSSFQLQNCL--RFKPHVGLFLNFSANHLDYHADLDEYLD 210

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK+ LF  + P++               +   H +   +L     G+      +      
Sbjct: 211 AKLHLFSRMGPED---------------IALLHESLHPLL----DGRSFTEAHIEWFGPT 251

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +               L GE    N   A       G+      E +     +P R E 
Sbjct: 252 NRFEA----------PHLLGEHNRSNVEAAWQAVKRFGVSEEQAAEAIRDFRPLPHRIEP 301

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V    R G +YV+ +  + +L+     +        I++ G     D  K      I   
Sbjct: 302 VAE--RNGVLYVNDSK-ATTLDAAEAAVHAFERPVRILMGGVWKGGDVAKFAEG--IKGR 356

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A + +            +I    +             EA+R    +    DV+++
Sbjct: 357 VAAVGLFGGS-------REILEPELARHFSVTWDETLTEAVRRQAGLAAPGDVVLL 405


>gi|238761555|ref|ZP_04622530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           kristensenii ATCC 33638]
 gi|238700069|gb|EEP92811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           kristensenii ATCC 33638]
          Length = 444

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 145/400 (36%), Gaps = 52/400 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + +V +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSEAADAGVEIVGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +                   L  L+SQ   +  V
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVPA----------------LTLLQQLASQKQENQLV 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
                         ++  A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 162 VLELSSFQLETTSSLRASAATLLNVTEDHTDRYPFGLQQYRAAKLRVYEN----AKVCVV 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 218 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 268

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  +  L  L     +P RF+ V   +    I    A 
Sbjct: 269 KLSGRHNYTNALAALALADAVGIPRSSSLTALTTFTGLPHRFQLVLERNGVRWINDSKAT 328

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +      +   +  D   I     D      
Sbjct: 329 NVGSTEAALDGLQ--VDGTLHLLL-GGDGKSADFSGLTRFLQGDHIKIYCFGRD------ 379

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             K  AE+   +    E     +A+    + L  +D++++
Sbjct: 380 -GKQLAELRPEVSQLTET--MEQAMALLAKSLAPRDMVLL 416


>gi|118581691|ref|YP_902941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
 gi|158512568|sp|A1AU63|MURD_PELPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118504401|gb|ABL00884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
          Length = 446

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 135/419 (32%), Gaps = 64/419 (15%)

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
            + D   F    +      IVVS           +     + ++          ASR   
Sbjct: 59  TRHDAGTFTQSHL------IVVSPGVPRTLPQLVMAHEAGVEIISEI-----ELASRFIQ 107

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++A+TGT+GK++  +    I  ++G  +F  G                       
Sbjct: 108 ---APLVAITGTNGKTTATTITGDIFIKNGFRTFVGGNIGN------------------- 145

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L  L         V A         +   +    +  NL  DH+D + + + Y  AK+
Sbjct: 146 -PLIELLESAEPVERVVAEISSFQLEWIRAFRPAVAALLNLSEDHLDRYASYREYIEAKL 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIH 286
           R+FE     +  A++ ADD     VM+ +      +          +G F     +   H
Sbjct: 205 RIFENQT-ADDYAVVNADDEL---VMEHSRGLRACLFPFSRKQELDEGIFHREGLIVWRH 260

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           N ++      G      F L G   + N + A    + +       L  + +   +  R 
Sbjct: 261 NGREERFPTAG------FRLQGVHNLENIMAALACSLLLECRPTESLACVREFEALHHRM 314

Query: 347 EFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           EFV     G R Y D  A    S+E  L++   IT      +   G D+     P+   +
Sbjct: 315 EFV-RELNGVRWYEDSKATNVGSVEKALESFDAIT------LIAGGKDKGGSYSPLSRLV 367

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  + ++ +   R         E +  +          EA+  A E+      +++
Sbjct: 368 RERVRHLVLIGEAAGR-------MQEELGTLTDTRRAATLEEAVSLAAELTAPGGTVLM 419


>gi|116333684|ref|YP_795211.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis ATCC
           367]
 gi|122269629|sp|Q03RJ2|MURC_LACBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116099031|gb|ABJ64180.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis ATCC
           367]
          Length = 443

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 87/302 (28%), Gaps = 40/302 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG  S       + R          +     
Sbjct: 107 IGVAGAHGKTSTTGLLAHVLSGVAPTSYLIGDGS--GKGTPNARFFVYEADEYRRHFL-- 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    K      TN+  DH DY+      ++A   L +++
Sbjct: 163 -----------------------ATKPDYAIMTNIDFDHPDYYTGIDDVYSAFETLAKQV 199

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +     + DD   +++          V   G         + +          +  +
Sbjct: 200 ---KKGIFAWGDDPELRKL-----KTDVPVYYYGTSDRDDFQARNIKRSTTGSTFDVYHD 251

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +   +F   L GE  V N+L    +     ++   +   L     V  RF         
Sbjct: 252 DEFLGNFEIHLFGEHNVLNSLAVIAVAYFEKVNMDEIKHELADFKGVKRRFTERKLADM- 310

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  + ++  L   R       II VF                 +L+LAD   
Sbjct: 311 -TIIDDYAHHPSEIKATLDAARQKYPDKEIIAVFQPHTFSRTIALMDDFAKSLNLADKVF 369

Query: 415 VT 416
           +T
Sbjct: 370 LT 371


>gi|257058868|ref|YP_003136756.1| cyanophycin synthetase [Cyanothece sp. PCC 8802]
 gi|256589034|gb|ACU99920.1| cyanophycin synthetase [Cyanothece sp. PCC 8802]
          Length = 877

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 126/357 (35%), Gaps = 31/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I +++G     +G T+T   +  +  +          A   L    V    +E + 
Sbjct: 505 LTAHIYRQTGKV---VGYTTTDGIYLGEYLVEKGDNTGPFSANVILKDPTVEVAVLETAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           AK++ +  E++  +  AI+ ADD
Sbjct: 562 GGILRSGLAFDTCDVGIVLNVAADHLGLGDINTIEQMAKVKSVIAEVVHPDGYAILNADD 621

Query: 251 AYSKEVMKRAHNAGCRV------------LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                + +R                    L  G          +  +   Q + I  E  
Sbjct: 622 PLVSAMAERVKAKVAYFSMSPDNPIIENHLRRGGLAAVYENGYLSILEGHQTLRIE-EAA 680

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
           +          F + NAL A     A G+D  ++ + +          PGR         
Sbjct: 681 NIPMTMGGMAPFMIANALAACLATFAQGVDIEMIRQGVRTFKASVNQTPGRMNLFNLGDY 740

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH     E +   +R     R+ VV G G  RD+    ++GKIA  + +  I
Sbjct: 741 HALV--DYAHNPAGYEAVGGFVRNWKGERLGVVGGPGDRRDEDLI-LLGKIAAQVFNRII 797

Query: 415 VTD-DNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V + D+ R  D  ++   II GI        +    +  +AI   ++ +N+  ++V+
Sbjct: 798 VKEDDDRRGRDRGEVADLIIKGIVQENSQIEYEAILDETQAIEVGLDRVNRGGLVVI 854


>gi|170681706|ref|YP_001742210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SMS-3-5]
 gi|218698511|ref|YP_002406140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI39]
 gi|218703348|ref|YP_002410867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UMN026]
 gi|293403160|ref|ZP_06647257.1| murD [Escherichia coli FVEC1412]
 gi|298378690|ref|ZP_06988574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300900881|ref|ZP_07119018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300938483|ref|ZP_07153223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331661462|ref|ZP_08362386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331681473|ref|ZP_08382110.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
 gi|170519424|gb|ACB17602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           SMS-3-5]
 gi|218368497|emb|CAR16232.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI39]
 gi|218430445|emb|CAR11311.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           UMN026]
 gi|291430075|gb|EFF03089.1| murD [Escherichia coli FVEC1412]
 gi|298281024|gb|EFI22525.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300355645|gb|EFJ71515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300456552|gb|EFK20045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331061377|gb|EGI33340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331081694|gb|EGI52855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
          Length = 438

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKICVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|238787571|ref|ZP_04631369.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia frederiksenii ATCC
           33641]
 gi|238724358|gb|EEQ16000.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia frederiksenii ATCC
           33641]
          Length = 461

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 124/363 (34%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  V  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMVAWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I+  +D + K+VM  A         VG  G +   +KV    +  +V 
Sbjct: 207 LV-RIVPGQGKIIVPDNDNHLKQVM--AMGCWSEQELVGETGSWF-ARKVSTDASVYEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E    +  + L GE  ++N L+A      +G+  A     L +      R E  G  
Sbjct: 263 LDNE-LVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRVLGEFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  +++      I+  +    I T +EM        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAHWSADIDTLVEMIVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|218296771|ref|ZP_03497477.1| UDP-N-acetylmuramate/alanine ligase [Thermus aquaticus Y51MC23]
 gi|218242860|gb|EED09394.1| UDP-N-acetylmuramate/alanine ligase [Thermus aquaticus Y51MC23]
          Length = 446

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 131/411 (31%), Gaps = 58/411 (14%)

Query: 82  FSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
               I  + P +     R       + L A  L  K     + VTGT GK++    +  I
Sbjct: 63  LPTPIPPDHPEVAAARARGLRVLRRMELLAHLLSQKPS---IGVTGTHGKTTTTGMLASI 119

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +GL  +       +    +   L   +       L+ +                   
Sbjct: 120 LLEAGLDPW-------VLLGGELGLLPGNARYGQGPRLAEVDESD--------------- 157

Query: 197 HRLDGIKLIAGSFTNLGRDHI--------DYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
               G+++     TNL  DHI        +YH++ +A   A        L     A++ A
Sbjct: 158 PLFQGVRVSVAVATNLEADHIAPPGQRAPNYHESLEALEEA----MRGFLKGAGVAVVPA 213

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
            D   K + +            G  G+    + +       +  +  EG+   +    +P
Sbjct: 214 FDERLKRLSQDLPRRL-----FGEGGELW-AEGLEPGPTGSRFLLVWEGRVLGEARLQVP 267

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL AA   +A G++   +L+ L +   V  RF+ VG    G  +  DYAH   
Sbjct: 268 GAHNVRNALAAALAALAFGVEVEAILKGLFRFPGVGRRFQKVGEVG-GAWVVDDYAHHPT 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---- 423
            +   L+        RI V+F                 AL  A   +V       E    
Sbjct: 327 EVRATLEAA-GHLGRRIRVLFQPHRLLRTQALWEEFVEALAQAQEVVVLPVYTAGERAQV 385

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            PE +   I  G+             EA+  A       D+ +  G G  T
Sbjct: 386 SPEALSQRIAEGLKARGVAACYLEGEEALAYARATAGPGDLWLALGAGDVT 436


>gi|113460502|ref|YP_718566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 129PT]
 gi|112822545|gb|ABI24634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           129PT]
          Length = 436

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 136/400 (34%), Gaps = 62/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV+S   S++           + VV +   F             + I+A+TG++GKS
Sbjct: 67  ADLIVISPGLSVKTLEIQTALQAGVEVVGDIELF--------CRHANKPIIAITGSNGKS 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +  GL     G     +                      L  Q      +
Sbjct: 119 TVTTLVSEMAKEDGLKVGMGGNIGIPA--------------------LELLQQDYDIYVL 158

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++E        A+I 
Sbjct: 159 ELSSFQLE--TTYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENC----QRAVIN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLF 304
           A+D  +              ++ G       LK       +  K+++ +  +        
Sbjct: 213 AEDVLT------TTEDLKSPITFGESQADYWLKTENGKQYLMAKERLILPCD------EM 260

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A+ L  A+ I    +   L K   +  RF+          I    A 
Sbjct: 261 KLVGRHNYMNALAASALVQAVDISFTAIRTALRKFTGLAHRFQLAYQKDDVRWINDSKAT 320

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S    L     + +   +++ G G   D      +  +             + +   
Sbjct: 321 NVGSTVAAL-TGLYVANKLHLLLGGDGKSADFS---ELATLINQPHIYCYCFGQDGKELA 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++++   +   I      EAIR     L + D++++
Sbjct: 377 ALSVQSQLFDTMEQAI------EAIR---PNLQQGDMVLL 407


>gi|281412288|ref|YP_003346367.1| UDP-N-acetylmuramate/alanine ligase [Thermotoga naphthophila
           RKU-10]
 gi|281373391|gb|ADA66953.1| UDP-N-acetylmuramate/alanine ligase [Thermotoga naphthophila
           RKU-10]
          Length = 457

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 88/221 (39%), Gaps = 17/221 (7%)

Query: 208 SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             TN   DH++ +  +   Y +A    FE++       + +A+D  +  +          
Sbjct: 174 IITNARGDHLENYGNSLSRYRSA----FEKIGKNADLIVTFAEDELTSHLGD-------- 221

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAI 325
            ++ G +     L+   A   +Q+  +   GK + +F   +PG   V NAL    L  ++
Sbjct: 222 -VTFGVKKGTYTLEMRSASRAEQKAVVEKNGKRYLEFKLKVPGFHNVLNALAVIALFDSL 280

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           G D A  LE LE    V  RF     +      +  DYAHT + +  +L+  + +     
Sbjct: 281 GYDLAPALEALETFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEK 340

Query: 385 IVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           IVV F         +       AL LAD  +VT+     E+
Sbjct: 341 IVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEE 381


>gi|169824312|ref|YP_001691923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
 gi|167831117|dbj|BAG08033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
          Length = 441

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 136/386 (35%), Gaps = 41/386 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           S  IR + P+++  N            A R++G     I+A+TGT+GK++  S + ++  
Sbjct: 64  SPGIRMDNPVILKANELNIEVVSDLELAQRIFGDI--KIVAITGTNGKTTTTSLMTKMLN 121

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            SG  +  IG          +   +     ++                +E SS  L+   
Sbjct: 122 DSGRKAISIGNIGV--GMLWEIYNSDKDTYFV----------------IECSSFQLES-- 161

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K       N+  DHID+H + Q Y NAK  + +    +    ++ ADD Y +E  K
Sbjct: 162 TKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLKNQ-DENCYTVLNADDEYYEECKK 220

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   + +     +   +K      +       ++ KD      L G     N L  
Sbjct: 221 FTKANVYDISTSKNVKRGSFIKDNSIYFSDSDCDKIIDLKD----VKLIGYHNYQNVLFC 276

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L   IGI+   + E L     V  R EFV      G  Y + +  +N ++  +K I +
Sbjct: 277 VTLAKLIGINDDSIRETLMSFSGVEHRLEFV--RDLSGVKYYNDSKGTN-VDASVKAIES 333

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                 +++   G D+                 + ++       E   K      +G   
Sbjct: 334 FDKN--VIILAGGYDKKVSLDNFFIAGKDKFKALILMGQTRDLFEQKAK-----EYGFKH 386

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  +A+  A ++    DV+++
Sbjct: 387 IYLVDDMKQAVTQANKIAESGDVVLL 412


>gi|302383885|ref|YP_003819708.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194513|gb|ADL02085.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 492

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 75/392 (19%), Positives = 138/392 (35%), Gaps = 66/392 (16%)

Query: 67  GAEAIVVSSAYSLQDF------SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           G  A+V+S    L              ++ P++   +   F    A+      P  ++A+
Sbjct: 65  GFAALVLSPGAPLTHPKPHWTVDKARAADVPVI--GDIELFARALAAIPADARP-KVVAI 121

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+  + +  + +++GL+    G    I          TP  +Y+          
Sbjct: 122 TGTNGKSTTTALIGWVLKQAGLTVHIGG---NIGIGVLALSAPTPDAVYV---------- 168

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 VE SS+ LD              TN+  DH+D H   + Y  AK RLF +++  
Sbjct: 169 ------VEVSSYQLDL--TTSFAPDVAILTNISPDHLDRHGGMEGYVAAKARLF-QVMSP 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC----------------A 284
           E  A+I  DD +  + +   ++ G R+ ++  +     +                    A
Sbjct: 220 EKVALIGVDDDWGWKTVNALNDRGLRLSTITTRTPPQFVDPAGGVPVAELATRLPDQKPA 279

Query: 285 IHNKQQVTISVEGK----------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
               + + +   G           D      LPG     NA  A     A+G+ +   ++
Sbjct: 280 FDAGRFIIVDATGGKLVADGVAIADLAPARSLPGRHNAQNAAFAYAAARALGVSTEAAVD 339

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L     +  R E VG    G   +V+ +  +N+ +   + + +  +   I         
Sbjct: 340 GLMTFPGLAHRMETVG--HLGPVRFVNDSKATNA-DAARQALMSYPTSFWIAGGRAKDGG 396

Query: 395 DQGKRPIMGKIA------LDLADIAIVTDDNP 420
            +  R +  ++A         AD A    D P
Sbjct: 397 IEDLRDLFPRVAKAYLIGEAAADFAATLGDTP 428


>gi|82701657|ref|YP_411223.1| UDP-N-acetylmuramate [Nitrosospira multiformis ATCC 25196]
 gi|82409722|gb|ABB73831.1| UDP-N-acetylmuramate [Nitrosospira multiformis ATCC 25196]
          Length = 456

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 122/364 (33%), Gaps = 39/364 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  I + +G+    +     I    Q+  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEYAGMEPGFL-----IGGIPQNFGIS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLI--AGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L + G   +  +         R   +          NL  DH D  +  +        L 
Sbjct: 149 LGNSGFFVIEADEYDTAFFDKRSKFVHFHPRTAILNNLEYDHADIFRNLEEIEQQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   +    +   + V+++       V  +G    +        +     V +S
Sbjct: 209 -RVVPGKGLIVSNGQEENLERVLRK--GCWTPVERIGVANGWEA-----DVLTDGAVAVS 260

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+     L+ L G+    NAL A       G+     +  L +   V  R E  G  +
Sbjct: 261 FLGESQGTLLWELLGKHNRMNALAALAAARHAGVAVKAGIAALAEFRNVKRRMEVKGI-T 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
           R   +Y D+AH   ++   +  +R+   G  I+                  +A  L  AD
Sbjct: 320 RDITVYDDFAHHPTAIRTTIDGLRSRVKGARIIAVLEPRSNTMKMGVWKESLADSLTGAD 379

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV---AGKG 468
           +      N   + P+ +       +  F E    I AI          D +++   AG G
Sbjct: 380 VVFCYAANLGWDLPQALLPLGEKAV-AFEELDQLIAAIT---AYAQPGDHVLIMSNAGFG 435

Query: 469 --HE 470
             HE
Sbjct: 436 GIHE 439


>gi|328957052|ref|YP_004374438.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4]
 gi|328673376|gb|AEB29422.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4]
          Length = 443

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 127/370 (34%), Gaps = 58/370 (15%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           ++  G+     +AVTG+ GK+S    +  +      +S+ IG   T       +     +
Sbjct: 98  AQFIGQFTS--VAVTGSHGKTSTTGLLAHVLSPLKNTSYLIG-DGTGHGVPDADFFILEA 154

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
             Y    L+Y                          +      TN+  DH DY+ +    
Sbjct: 155 CEYRRHFLAY--------------------------QPDYAIMTNIDFDHPDYYSSLSDV 188

Query: 227 FNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCA 284
           F+A    F+ +  +   AI+   DD   +++      A   +L  G++       K +  
Sbjct: 189 FDA----FQSMAVQVKKAIVACGDDEQLQKL-----QANVPILYYGFEDHNDFQAKNMTR 239

Query: 285 IHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   + V  + +  F  P  G+  + NAL    +C    ID   V+E+L+    V 
Sbjct: 240 STTGSTFDVYVRDEFYGHFEIPTFGKHNILNALSVIAICQYENIDKEGVMENLKTFKGVK 299

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIM 402
            RF           I  DYAH  + +   +   R    +  II +F              
Sbjct: 300 RRFSEKQMLDM--VIIDDYAHHPSEIRATIDAARQKYPNKEIIAIFQPHTFTRTVALLSD 357

Query: 403 GKIALDLADIAIVTD------DNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRT 451
              +L+LAD   + D      +N      + +  +I +G     E+      +  +A+  
Sbjct: 358 FAESLNLADSIYLCDIFGSVRENQGDITIQDLVNKIDNGASILSEENMSPLLDHHDAV-- 415

Query: 452 AIEMLNKQDV 461
           AI M    DV
Sbjct: 416 AIFM-GAGDV 424


>gi|153835403|ref|ZP_01988070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
 gi|148868059|gb|EDL67234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
          Length = 437

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 143/399 (35%), Gaps = 60/399 (15%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V +   +L   +  A +   TP  VV +      LFA  +     + ++A+TG++G
Sbjct: 69  ADLVVTNPGIALATPEIQAVLAKGTP--VVGDIE----LFAWAVD----KPVIAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL+    G     +                      L  QG    
Sbjct: 119 KSTVTDLTGVMAKAAGLTVGVGGNIGVPA--------------------LDLLEQGADLY 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F+        A+
Sbjct: 159 VLELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDN----AELAV 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD       +   +    +++ G   +   L+   A  N+  +    +         
Sbjct: 213 VNRDDQ------ETFPDTETPLVTFGSDEQAYGLE---ADGNRTWLLDHGQRVIASDELK 263

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+  + NALV   L  A  +D    L  L+    +  R + V  N RG +   D   T
Sbjct: 264 LVGKHNLANALVVLALLKAADVDYHKSLNALKTYTGLTHRCQVVADN-RGVKWVNDSKAT 322

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           + +  M   +    T    ++V G G   D    P+    A     +     D       
Sbjct: 323 NIASTMAALSGLESTGKLYLLVGGVGKGADFT--PLKPIFATLNLQLCCFGADG------ 374

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E +             + I+     L   D++++
Sbjct: 375 ----DEFMPLHESATRFDTMEDVIQQISSQLKTGDMVML 409


>gi|322412250|gb|EFY03158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 452

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 102/280 (36%), Gaps = 26/280 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +D  K      TNL   H+DYH + + Y  AK R+  E+  ++   I+
Sbjct: 166 MELSSFQLM--GVDTFKPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTAED-YLIL 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+   S  + K          +          ++V      +   +  +G     +  L
Sbjct: 223 NANQEISAALAKITKATVIPFST----------QEVVDGAYLEDGMLYFKGHPIMPVVNL 272

Query: 307 --PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PGE  + NAL A  +    GI   +++E L     V  R + VG   +    Y D   
Sbjct: 273 GVPGEHNIENALAAIAVAKLSGIADDVIVEVLSHFGGVKHRLQLVG-KIKDITFYNDSKS 331

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T+  +    K +    + +++++   G DR      ++  +      I +        E 
Sbjct: 332 TN--ILATQKALSGFDNKKLVLI-AGGLDRGNEFDDLVPDLRGLKQMIIL-------GES 381

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E+++         + E  +   A   A +     D +++
Sbjct: 382 AERMKRAAETANVPYREAADVAAATELAFQEAQAGDTILL 421


>gi|171780269|ref|ZP_02921173.1| hypothetical protein STRINF_02057 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281617|gb|EDT47052.1| hypothetical protein STRINF_02057 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 443

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 94/301 (31%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +  + +    +S+ IG  +   S   +  +               
Sbjct: 106 FGVAGAHGKTSTTGLMAHVLKNITDTSYLIGDGTGRGSANSNYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY ++    F+A     +++
Sbjct: 155 ----------EYQRHFMPYH------PEYSIITNIDFDHPDYFKSIDDVFDAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD Y +++   A      +   G+          V    N     +   
Sbjct: 199 ---QKALFLFGDDPYLRKITSDA-----DIYYYGFKDSDDFMAYDVVRTTNGSAFKVKHG 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++   F  P  G   + NA          GID  LV EH++    V  RF     N+  
Sbjct: 251 EEELGSFHLPAFGRHNILNATAVIANLYVAGIDIELVAEHMKTFGGVKRRFTEKVINN-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ VF                 AL+ AD   
Sbjct: 309 TTIIDDFAHHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDEFANALNQADSVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|15799772|ref|NP_285784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 EDL933]
 gi|15829346|ref|NP_308119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. Sakai]
 gi|168751402|ref|ZP_02776424.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755696|ref|ZP_02780703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764033|ref|ZP_02789040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168771312|ref|ZP_02796319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776932|ref|ZP_02801939.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781973|ref|ZP_02806980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168801515|ref|ZP_02826522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|195939304|ref|ZP_03084686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. EC4024]
 gi|208807723|ref|ZP_03250060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812067|ref|ZP_03253396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818888|ref|ZP_03259208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398858|ref|YP_002268696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325428|ref|ZP_03441512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254791225|ref|YP_003076062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. TW14359]
 gi|291280913|ref|YP_003497731.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|30316080|sp|Q8X9Y9|MURD_ECO57 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12512791|gb|AAG54392.1|AE005185_9 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359548|dbj|BAB33515.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767768|gb|EDU31612.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014554|gb|EDU52676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000408|gb|EDU69394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357000|gb|EDU75419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189359908|gb|EDU78327.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365875|gb|EDU84291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189376376|gb|EDU94792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|208727524|gb|EDZ77125.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733344|gb|EDZ82031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739011|gb|EDZ86693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160258|gb|ACI37691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209746564|gb|ACI71589.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746566|gb|ACI71590.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746568|gb|ACI71591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746570|gb|ACI71592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746572|gb|ACI71593.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|217321649|gb|EEC30073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254590625|gb|ACT69986.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760786|gb|ADD54747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190389|gb|EFW65039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320642127|gb|EFX11478.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. G5101]
 gi|320647490|gb|EFX16285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. 493-89]
 gi|320652824|gb|EFX21062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. H 2687]
 gi|320658213|gb|EFX25942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320663522|gb|EFX30806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320668834|gb|EFX35629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326345192|gb|EGD68935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346954|gb|EGD70688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1044]
          Length = 438

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GVQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|239907965|ref|YP_002954706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
 gi|239797831|dbj|BAH76820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
          Length = 442

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 125/399 (31%), Gaps = 69/399 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V+S      + +  + +     VV          AS      PE I+AVTG++G
Sbjct: 74  AGADLVVLSPGIRAANLAPALAACPGAQVVSEL-----ELASWFT---PEPIVAVTGSNG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  + + +G   F  G   T  S                     LS +    V
Sbjct: 126 KTTTVMLISALLEAAGRRVFTGGNIGTPLS------------------DHVLSEEPADVV 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L        +       N   +H+D+H     Y +AK+R+F    P ++  +
Sbjct: 168 VLEVSSFQLQL--TKTFRPKVAVLLNFAANHLDWHADLDEYLDAKLRIFATQRPDDTAIV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                   ++++                G+      V                       
Sbjct: 226 ----SEELRDLL---------------SGRPFTRAGVTWYAAASGF----------LCPR 256

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     N   A   C A G+D  L  +        P R + +G   +GG ++VD +  
Sbjct: 257 LAGVHNQANMEAAYLACRAFGVDIKLARQVFADFVPAPHRIQIIGE--KGGVLFVDDSK- 313

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           + ++  +   IR+      ++    G  +      ++  +   +  + +        E  
Sbjct: 314 ATTVTAMEAAIRSFDRPVRLLC--GGVWKGGDLEAMLPLVKEKVVAVGLFGGSREVFETA 371

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    G+          EA+          D +++
Sbjct: 372 -------FAGVVPVRYAPTLAEAVARIYADAAPGDAVLL 403


>gi|224540980|ref|ZP_03681519.1| hypothetical protein CATMIT_00131 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526131|gb|EEF95236.1| hypothetical protein CATMIT_00131 [Catenibacterium mitsuokai DSM
           15897]
          Length = 436

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 113/359 (31%), Gaps = 57/359 (15%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++V +A+   +       + P + + +   FL+              + + GT GK+S  
Sbjct: 62  VIVGNAFDRSNEEVAAAEDNPNVTIHHYYDFLAKLMDDHI------TIGIAGTHGKTSTT 115

Query: 131 SFVQQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
                + +    ++  IG     +T  +             +L                 
Sbjct: 116 GMAYHLFKDYDKTNVLIGDGTGYATKGAKYFIAECCEYKDHFLWYH-------------- 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH+DY ++ + Y  +  +   +    +   +I+
Sbjct: 162 ----------------PDYSYINNIEMDHVDYFKSMEQYEQSFEKYANQ---AKKAIVIW 202

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            DD +   +     N   RV+  G   G  +  K V          + + G  F  F  P
Sbjct: 203 GDDPHLPHL-----NYTKRVVKFGVKDGNDVQAKNVINNEKGLSFDVYIYGDLFGHFTLP 257

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G   +YN L    L    G+D   +   L        R+      +       DYAH 
Sbjct: 258 FYGMHTLYNTLGVITLGYLEGMDFDYMQSQLSTFKGTKRRYAVKEVGNN--VYVDDYAHH 315

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +++ +++  RT   G+ IV         +G R      A D A   + T D+P   D
Sbjct: 316 PTAIKYVIEETRTRFPGKQIVAVYQPDRYSRGLR-----FAKDYA-RIMDTVDHPYFVD 368


>gi|296111923|ref|YP_003622305.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc kimchii IMSNU
           11154]
 gi|295833455|gb|ADG41336.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc kimchii IMSNU
           11154]
          Length = 444

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 91/300 (30%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G  GK+S    +  + +    +S+ IG  +             PS  +        
Sbjct: 107 IAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGTGRG---------VPSSQFFVVEADEY 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +V                        TN+  DH DY+Q  Q   +A       +
Sbjct: 158 RRHFKDYV------------------PDYAILTNIDFDHPDYYQDIQDVTHAFSDFASHV 199

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +     + DD + + +  +A                     +         T+   G
Sbjct: 200 ---KKAIFAWGDDEHLRALHPKA---DVYYYGTNSDKDDFVATNIHKSTEGSHFTVVFRG 253

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   +F  PL G+  + NAL    +     ++  L+ ++L     V  RF          
Sbjct: 254 ETLGEFSVPLFGQHSILNALAVIAVAYMEKVNLTLIRQYLMTYQGVKRRFSEKQIAD--I 311

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    ++  L   R    + +II +F                 +L+ AD   +
Sbjct: 312 TVIDDYAHHPTEIDATLDAARQKYPNKQIIAIFQPHTYSRVIAYKDEFAKSLEAADKVYL 371


>gi|288937140|ref|YP_003441199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|290512563|ref|ZP_06551929.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
 gi|288891849|gb|ADC60167.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|289774904|gb|EFD82906.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
          Length = 438

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 154/400 (38%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIELF--------CREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDTDRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYEN----AKTCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +  +
Sbjct: 212 NADDALTMPV----RGADDRCISFGVDVGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 307 P--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A 
Sbjct: 263 PLTGQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVLDHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D     +
Sbjct: 323 NVGSTEAALNGLQL--DGTLYLLL-GGDGKSADFTPLKRYLGGDRIRLYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R ++       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPDVA------VQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|160945307|ref|ZP_02092533.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443038|gb|EDP20043.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
          Length = 467

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 115/356 (32%), Gaps = 29/356 (8%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIG----------------A 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L  +S + V    VE SS  L               TN+  +H+D+H+  Q Y N
Sbjct: 157 ALLPMLPEVSPEDVAV--VELSSFQLISM---HASPNIAVVTNVTPNHLDHHKDMQEYIN 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +           + Y ++  S+ +             +        L+K   +   
Sbjct: 212 AKRNILLYQKQPCRAVLGY-ENEISRSMQADCKGKQVWFTRLHDTDNGAFLRKEDGMLCM 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +            L G   + N L AA       +    + +       V  R E 
Sbjct: 271 AEDGVVTPFLA-QKDVKLRGLHNIENLLAAAAAVWGE-VPVEAIRQVGSTFTGVEHRIEP 328

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T    G +Y + +    S    +  +R+      +++   G D+     P+  +I   
Sbjct: 329 VRT--LDGVLYYNDS-IGTSPTRTIAGLRSFDRK--VILIAGGYDKHIPYEPLAPEIIAH 383

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++ ++    PR E   +  +             N   A+  A       D++++
Sbjct: 384 VKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDIIIL 439


>gi|27364041|ref|NP_759569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus CMCP6]
 gi|30316015|sp|Q8DEK8|MURD_VIBVU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27360158|gb|AAO09096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           CMCP6]
          Length = 442

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 129/397 (32%), Gaps = 51/397 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            + VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPQIQTVLARGVAVVGDI-----ELFAWAADKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +    G+     G     +                      L  Q V    +
Sbjct: 121 TVTDLTGVMANACGVKCAIGGNIGVPA--------------------LDLLEQEVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L+A +F NL  DH+D +Q    Y  AK+R+F+         ++ 
Sbjct: 161 ELSSFQLE--TTSSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH----AKHGVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  +         +   +++ G   K      V +   +  ++ + +         L 
Sbjct: 215 RDDRQTYPETSHGQQSLA-LVTFGSDDKEF---GVISHQGESWLSYNQQPILASRELKLV 270

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V N LV   L    GID    L  L+    +  R + V  N RG +   D   T+ 
Sbjct: 271 GQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLTHRCQVVADN-RGIKWVNDSKATNL 329

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +      +         ++V G G   D    P+   +A     +     D         
Sbjct: 330 ASTQAALSGLNCAGKLYLLVGGDGKGADFS--PLKPILAQLNLQLCCFGADG-------- 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +             + I      L   D++++
Sbjct: 380 --DQFMPLHASATRFERMEDVIEHISPQLQSGDMVML 414


>gi|325496024|gb|EGC93883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ECD227]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HIDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|167622683|ref|YP_001672977.1| UDP-N-acetylmuramate [Shewanella halifaxensis HAW-EB4]
 gi|167352705|gb|ABZ75318.1| UDP-N-acetylmuramate [Shewanella halifaxensis HAW-EB4]
          Length = 461

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 109/361 (30%), Gaps = 28/361 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +     +      +     SP ++ +
Sbjct: 105 PQRWVLAVSGTHGKTSTSSMLAWILEDCGYEPGFL--IGGVPQNFGVSARLGGSPFFVVE 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                       +       NL  DH D     +A    +  
Sbjct: 163 ADEYDSAFFDKRSKFVHY------------QPRTLVINNLEFDHADIFDDLKAIQR-QFN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +  E   I  AD    ++V++          +            V    +  +  
Sbjct: 210 HVIRTVAGEGKIIWPADAVSVQQVIEM--GCWSEQETYHLAPSSQGWHAVNLTQDGHKFE 267

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+    L + L G+  + NA++A      +G+     +  L +      R E + T
Sbjct: 268 VFFDGESQGVLDWQLIGQHNIENAVMAIAAARHVGVKPDAAIAALTQFAPPKRRMELLDT 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G  +Y D+AH   ++   L  +R       + V                 +A  LA 
Sbjct: 328 -VNGIEVYDDFAHHPTAITTSLSGMRARVGEAKVTVILEPRSNTMKSGVHKDTLANSLAL 386

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGK 467
            +     N        I  ++   +           +  E +          D ++V   
Sbjct: 387 AS-----NAYLYQAGNIDWDMRSAMSSASIPVEVLYDIDEIVDKVAAQACSTDTIIVMSN 441

Query: 468 G 468
           G
Sbjct: 442 G 442


>gi|126741293|ref|ZP_01756971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
 gi|126717611|gb|EBA14335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
          Length = 465

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 137/407 (33%), Gaps = 47/407 (11%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVTG 122
            A+V S      Y   +          + V ++   F + FA         P  ++A+TG
Sbjct: 68  AALVTSPGIPHLYPQPNPVIRSALEAGVPVDNDIGLFFASFAHQGWDMMDQPPKVVAITG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+  + +  I +  G  S   G                         L        
Sbjct: 128 SNGKSTTVALLHHILESVGRDSQMAGNIG-------------------RGVLDIDPPADG 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SS+  +  R   +       TNL  DH++ H     YF AK RLF E  P  +
Sbjct: 169 GVVVLELSSYQTELAR--ALTPDVAILTNLSEDHLERHAGLGGYFAAKRRLFAEGGPDRA 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGK 298
              I  D+               RV+ +  +    G    +       ++ +    V   
Sbjct: 227 IIGIDEDEGLFLAGQLSQAAVDDRVIRISAKKKLTGPGWQIFARKGFLSEYRKGRQVASI 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D   +  LPGE    NA  A      +G+   ++ + L+    +P R + +   + G R 
Sbjct: 287 DLRQMTGLPGEHNHQNACAAYAAARVLGLAPRVIEQALDSYPGLPHRSQTIAEAA-GVRY 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             D   T+  L+  +K +      R I     G +++ G   + G+         I   +
Sbjct: 346 VNDSKATN--LDSAIKALSAFPKIRWIC---GGLEKEGGLSALQGQTKNVQKAYVI-GRE 399

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                    + AE+   +          +A+  A+E     + +++A
Sbjct: 400 AAGFAMQLDVEAEVCTTM---------EQAVARAMEDAQSGETVLLA 437


>gi|85374297|ref|YP_458359.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
 gi|84787380|gb|ABC63562.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
          Length = 476

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 138/415 (33%), Gaps = 53/415 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           ++V+SA         +R+     P L   +    L   A        E  +A+ GTSGKS
Sbjct: 80  VLVASAAVEDSVPEVVRAKELGLPRLTRADLNAALFNSA--------ETGVAIAGTSGKS 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   +  I   +G          TI + A      +       +  +     GV     
Sbjct: 132 TVTGMLGWILHHAGREP-------TIMNGAVMKNFVSEG-----RPFASAVIGGVDLYVS 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E          +   +   G   N+  DH    ++ +        LF + +     A+I 
Sbjct: 180 EVDESDGS---IALYQPKVGLLLNVSLDH----KSMEELR----TLFGDYVEASDIAVIN 228

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLF 304
           ADD  + ++  RA +A    +          +    A    +Q    ++ +D      + 
Sbjct: 229 ADDDEAIQLEGRADDAITFAI-YDKGASIGVVDGSRADGPVRQAATVIDRRDDSEHALVL 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   + NAL A     A G+  A  +  L +   +  RF+ +GT++ G  +  D+ H
Sbjct: 288 HMPGRHNLSNALAAIAGASAAGVQVADAVAALAEFKGLARRFDIIGTSASGITVIDDFGH 347

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA------------DI 412
                   L+ ++    GR++  F   G      R +  ++A   A            D 
Sbjct: 348 NPEKCRATLRTLKAH-PGRVLAFFQPHGYG--PLRQMGAELAETFAYELDADDITLLCDP 404

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
                   RS+  E+I   I       I    R       +      D +VV G 
Sbjct: 405 VYFGGTVDRSQGSERIVDLIAQAGGQAIHINTREGCGDWLVANAQPGDRIVVMGA 459


>gi|167614199|gb|ABZ89703.1| UDP-N-acetylmuramate--L-alanine ligase [Buchnera aphidicola]
          Length = 478

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 147/410 (35%), Gaps = 56/410 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-- 137
            + ++  + N PIL+     + L +      G      +A++GT GK++  S +  IC  
Sbjct: 93  PEITSAKKYNIPILL---RAEMLQILMKFKTG------IAISGTHGKTTTTSMITDICIR 143

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            R   +    G   +I+S+A            L  +  ++     +  S           
Sbjct: 144 SRLNPTCINGGLIKSINSYA-----------TLGSSRYFIVEADESDASFL--------- 183

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               +       TN+  DH+D++ + Q      ++ F + +P    AII  D+     + 
Sbjct: 184 ---YLNPTIAIVTNIESDHMDHYNSLQQLIETFLK-FLKKIPIHGIAIICIDNFPIPNIF 239

Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNA 315
            +     C++++ G+ +   I +            ++ V  K        +PG+    NA
Sbjct: 240 SKIK---CQIITYGFNKNADIRILCYRQHSFLGFFSLIVNKKIKLSIKLNIPGKHNALNA 296

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSN 367
             A    ++ G+ +  +++ L+       RFE++G         N++   +  DY H   
Sbjct: 297 AAAVAFSLSQGLKTEDIIKTLKNFQGTARRFEYLGYLSITKDNINNKNSILIDDYGHHPT 356

Query: 368 SLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--- 423
            L   +K IR +     +I++F                  L   D  ++ +    +E   
Sbjct: 357 ELSETIKTIRTSWPKKNLIMIFQPHRYTRTYNLYYEFIKVLVTVDTLLILNVYSANEKFI 416

Query: 424 ---DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              +   +  +I   G        N    + T +  +   DV+++ G G+
Sbjct: 417 SGANSYSLYQDIKKSGKIDITLISNNNFIMTTLLSKVTGNDVILIQGAGN 466


>gi|296284500|ref|ZP_06862498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 433

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 129/401 (32%), Gaps = 68/401 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSN---TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G EA++V+    L        ++    P++        + LFA       P  ++ +TGT
Sbjct: 64  GFEAVLVTPGVPLNTHPIKPHADKFGVPVI------GDIELFAQAREHLPPHKVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  +    I + +G+ +   G         +                  L   GV 
Sbjct: 118 NGKSTTTALTHHILKTAGVPTTMGGNIGLPILGQEP-----------------LPEGGV- 159

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +        N+  DH+D +++ +AY  AK+RL +  L     
Sbjct: 160 -YVLELSSYQIDL--TFSLDCDVAVILNITPDHLDRYESFEAYAEAKLRLSD--LQSAGR 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +  D+                + + G       L      +        + G+     
Sbjct: 215 PTVIGDEVLG-------------LWNPGRNVAPEDLWVCDREYP-------LPGQSNWPT 254

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
              P      N   A  L   +GI+ A++ + L     +P R E VG   R G +YV+ +
Sbjct: 255 LQGP--HNSENVDAAGCLASQLGIEDAVIDQALRTFPGLPHRMERVGE--RAGVLYVNDS 310

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +N                  +V   G  ++ G       I    A   I        E
Sbjct: 311 KATN--TAAAAPALAAFEKIHWIV--GGQAKEPGLGETEQHIGHVTAAYTI-------GE 359

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +     +    P     G    A+ TA       + +++
Sbjct: 360 AGDAFADALAPHCP-VSRCGTLDIAVHTAALAAKPGETVLL 399


>gi|145297832|ref|YP_001140673.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850604|gb|ABO88925.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 456

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 105/363 (28%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  + + + L    +     +      +     +P ++ +
Sbjct: 101 QDRWVLAVAGTHGKTTTASMLAWVLEYAKLEPGFL--IGGVPGNFPVSARLGSAPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +                               NL  DH D      A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYH------------PRTLVMNNLEFDHADIFPDLAAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +          ADD  +     R       V  VG        K V    +     
Sbjct: 207 LMRTVPSNGRVLFPQADDNLT---AVRKMGCWSEVELVGQ--DDAKWKAVKLADDGSAFE 261

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G K  +  +   GE  V N L+A       G+     +  L +      R E  G 
Sbjct: 262 VWLDGSKQGEVHWECIGEHNVNNGLMAIAAARHAGVMVEHGIAALRQFKSPKRRMELKGE 321

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
            + G  +Y D+AH   ++E  L  +R       I+            G          D 
Sbjct: 322 VA-GISVYDDFAHHPTAIETTLGGLRAKVGKARILAVLEPRSNTMKLGVHKEELAACFDG 380

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD             P  I     E+   +    +  N +E  I   +      D +++ 
Sbjct: 381 ADEVFFFQ-------PPNIGWDLGEVTAHMSRPAKVFNELETLINRLVAECRDGDHILIM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|191167754|ref|ZP_03029561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
 gi|190902180|gb|EDV61922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|331645198|ref|ZP_08346309.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
 gi|330909935|gb|EGH38445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           AA86]
 gi|331045955|gb|EGI18074.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    +    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAVLRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|163855000|ref|YP_001629298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           petrii DSM 12804]
 gi|163258728|emb|CAP41027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bordetella petrii]
          Length = 509

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 148/437 (33%), Gaps = 84/437 (19%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
               + QA A+G E +       ++ F+                + L+  A     +   
Sbjct: 95  ARDLLEQAAARGVEVV-----GEIELFA----------------RALAELAESRDYRP-- 131

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +L VTGT+GK++V +  +Q+ +  G++    G     +  A  + L       +     
Sbjct: 132 RLLTVTGTNGKTTVTALTRQLVEAGGMTVRAAGNIGPAALAALIDALDADDLPQVW---- 187

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +E SS  L+  R   +   A    N+ +DH+D+H    AY  AK RL  
Sbjct: 188 ----------VLELSSFQLETTR--SLMADAAVVLNVTQDHLDWHGGMDAYAQAKARL-- 233

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L     +I+  DD     +++       R  S G     +       +       ++ 
Sbjct: 234 --LKMARVSIVNRDDPRVAGMVEALPAMDVR--SFGRDLPELVGDMGLELGQGMAWLVAC 289

Query: 296 EGKDFD----------------------------FLFPLPGEFQVYNALVAAGLCIAIGI 327
           E  DFD                                + G+    NAL A  L   + I
Sbjct: 290 EPNDFDEPAPPARRKKDAPPPRRGAGRISRLMPLDALRIRGQHNGLNALAALQLARVLNI 349

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +L  L +    P R EFV T      I         +    L+ +     G+ +V+
Sbjct: 350 GWGPMLRALREYTGEPHRAEFVRTIGEVDYINDSKGTNVGATVAALEGL-----GQPVVL 404

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              G  + Q   P+   +      + ++  D P   +  ++ A+   G+P  +   +  +
Sbjct: 405 IAGGLGKGQDFSPLAPVVTRHARAVVLIGTDGP---EIGRVLAD--TGVPC-VAAQDMRD 458

Query: 448 AIRTAIEMLNKQDVLVV 464
           A+R   E+    D +++
Sbjct: 459 AVRRGAELAQPGDAVLL 475


>gi|83814772|ref|YP_444701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           DSM 13855]
 gi|122063258|sp|Q2S530|MURD_SALRD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83756166|gb|ABC44279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           DSM 13855]
          Length = 460

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 117/322 (36%), Gaps = 23/322 (7%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFE 235
           L ++    V +E SS  LD   ++  +       N+  DH+  +    +AY  AK  +F 
Sbjct: 157 LETEPTDVVVLEVSSFQLDH--VETFRPRVSVLLNITPDHLGRYDHDFEAYAQAKHNIFR 214

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +       DD       + A   G R +++  +G    +    A     ++ +  
Sbjct: 215 NQGEGDVVVYNRDDDDVRNAAEEAAAEQGVRPMAITREG----VPAAGAGFRDGRIVLRT 270

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + +D   +      L G   +YN+L AA     + +++ ++ E L     VP R E V T
Sbjct: 271 DDEDDSLMPQDELALRGRHNMYNSLAAAVSARVMEVENDVIRESLSGFEGVPHRLEEVHT 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 +    A   N++   L++       R IV+   G D+      +   +   +  
Sbjct: 331 VDDVLYVNDSKATNVNAVWYALESFD-----RPIVLIAGGRDKGNDYTDLKPLVRDQVRA 385

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +  +       E  EK+  E+    P         +A+  A       DV++++     +
Sbjct: 386 VVAL------GESAEKVERELGGEAPDHSRAETMEDALTQAQRAAQPGDVVLLSPACS-S 438

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             +  N E++      ++  +L
Sbjct: 439 FDMYENYEERGDTFRRLVETLL 460


>gi|259503623|ref|ZP_05746525.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus antri DSM 16041]
 gi|259168397|gb|EEW52892.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus antri DSM 16041]
          Length = 435

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 88/302 (29%), Gaps = 40/302 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G  GK+S  + +  +      +S+ IG    +     D+R                
Sbjct: 106 IGIAGAHGKTSTTALLAHVLAAVEPTSYLIGD--GVGKGNDDDRFFVFEAD--------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H LD H            TN+  DH DY +       +      ++
Sbjct: 155 ----------EYRDHFLDYH------PDYAIMTNIDFDHPDYFKDIDDVRGSFETYGRQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +     + DDA  +++     +    V   G   G     + +              
Sbjct: 199 ---KKAIFAWGDDANLRKL-----DVDVPVYYYGTGAGDDFRAENIRRTPAGSTYDAYFR 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   L GE  + N+L    +     +D   + + L     V  RF         
Sbjct: 251 DQKLGTFTIHLYGEHSILNSLAVLAVAYMEKVDMDKIRQELANFSGVKRRFSETDIADD- 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            ++  DYAH  N ++  +   R       I+ VF                 +L  AD   
Sbjct: 310 -KLIDDYAHHPNEIKATIDAARQKFPDKEIVAVFQPHTYSRLAAYIDGFAASLSKADKVF 368

Query: 415 VT 416
           VT
Sbjct: 369 VT 370


>gi|299821556|ref|ZP_07053444.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
 gi|299817221|gb|EFI84457.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
          Length = 455

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 22/283 (7%)

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             ++++E SS  L    +D         TN+   H+DYH  +  Y  AK ++ +     +
Sbjct: 162 EQYITMELSSFQLM--GIDTFHPHISVITNIYEAHLDYHADRDEYVQAKWKIQKNQT-AD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I  D    K + K+         +    G   +++    + N + V     G+  D
Sbjct: 219 DILVINWDQEELKTLTKKTKAQIVPFSTTQKLGLGSYVQNGKLMFNDEIV-----GERAD 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L  LPG+  + N L +  +   IG+ +  +++ L+    VP R +FV T   G + Y D
Sbjct: 274 IL--LPGDHNLENILASIAVAKTIGVSNEQIMQVLKTFKGVPHRTQFV-TEWHGRKFYND 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+  +      ++       +V+   G DR      ++       A +         
Sbjct: 331 SKATN--ILATQSALKGF--KEPVVLLAGGLDRGNEFDELLPFFQHVKALVCF------- 379

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E  EKI               N   A+  A E  +  DV+++
Sbjct: 380 GETAEKIGRIGKQSGTEVFYVENVEAAVPVAFEASSPGDVILL 422


>gi|168211219|ref|ZP_02636844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens B str. ATCC 3626]
 gi|182626019|ref|ZP_02953782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens D str. JGS1721]
 gi|170710774|gb|EDT22956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens B str. ATCC 3626]
 gi|177908726|gb|EDT71237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens D str. JGS1721]
          Length = 458

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 135/400 (33%), Gaps = 58/400 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +  F     G     +  VTG+ GK++  + V ++  + G  ++  G   T         
Sbjct: 108 MEEFVRYCKG----KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTP-------- 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L   +  +  +    V +E SS  L       +++     TN+  +H+D H+
Sbjct: 156 --------LFSNIEEIKEE--DKVVLELSSFQLMTM---DVEIDVAIVTNITPNHLDMHK 202

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             Q Y +AK  +F+    +    +I  ++  +K + K A     R  S    G+  + K 
Sbjct: 203 DMQEYIDAKKNVFKYQ-RENDLLVINDENEITKNLDKEAKGKVVRFSSKKTAGEDAYYKD 261

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      + V GK+      +  +    V N L A        +    + +  E  
Sbjct: 262 ---------GKLYVHGKEVCKKDDIIIKGMHNVENYLAAFLAVYDE-VSIESMKKVAETF 311

Query: 340 HVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V  R EF+     G + Y D  A T       LK          +++   G D+    
Sbjct: 312 GGVHHRCEFI-REVDGVKYYNDSIASTPTRTLAGLKAFEK-----PVILLAGGYDKHVPF 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKG-NRIEAIRTA 452
            P+  +    +  I +           EKI+A     E   GI   +  G +  E +  A
Sbjct: 366 EPLAYEGYEKIKAIVLF------GVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVSIA 419

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             +    D++        +  +  N E +     +I+  I
Sbjct: 420 KSIAENGDII-TLSPACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|71279807|ref|YP_267163.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Colwellia psychrerythraea 34H]
 gi|71145547|gb|AAZ26020.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Colwellia psychrerythraea 34H]
          Length = 479

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 119/371 (32%), Gaps = 39/371 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK++ +S +  I + + +S   +     I    Q+   +           
Sbjct: 108 RWVLAVSGTHGKTTTSSMLAWILEYAHMSPGFL-----IGGVPQNFSSS----------- 151

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +  +       NL  DH D              
Sbjct: 152 ARLGDTPFFVIEADEYDSAFFDKRSKFVHYRPRTLVINNLEFDHGDIFNDLSDIQKQFHH 211

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQ 289
           L   ++P     +  A++    E +           +   Q                   
Sbjct: 212 LI-RMVPSNGLILSPANEEAITETLAMGCWTPTEFSNGELQQDEPSDAGWQVEKLNAQGS 270

Query: 290 QVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  +   GK+   + + L G+F + NA++A       G+ SA+ +E L +      RFE 
Sbjct: 271 EFIVKFNGKEQGVVKWDLIGDFNIDNAVMAIAAARHAGVPSAVSIEALAEFINTKRRFEL 330

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---------GRIIVVFGCG-GDRDQGK 398
            G  +    +Y D+AH   ++   L  +R   S         GRI  V          G 
Sbjct: 331 RGIVNN-ISVYDDFAHHPTAIAKTLAGVRAKLSQQESEQEQVGRIFAVLEPRSNTMRSGV 389

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLN 457
                  +L  AD   +       E      +++I       +  + +E  + +  +   
Sbjct: 390 HKESLPKSLIDADQVFIYQ----GEQVTWSVSDLIKQCKPACQVEDNVERLVESIAQQAQ 445

Query: 458 KQDVLVVAGKG 468
             D++VV   G
Sbjct: 446 AGDIIVVMSNG 456


>gi|256020074|ref|ZP_05433939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella sp.
           D9]
 gi|300821907|ref|ZP_07102051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|309796078|ref|ZP_07690490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331666325|ref|ZP_08367206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331680662|ref|ZP_08381321.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332281224|ref|ZP_08393637.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
 gi|300525507|gb|EFK46576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|308120320|gb|EFO57582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331066536|gb|EGI38413.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331072125|gb|EGI43461.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332103576|gb|EGJ06922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|302380184|ref|ZP_07268656.1| bifunctional protein FolC [Finegoldia magna ACS-171-V-Col3]
 gi|302311967|gb|EFK93976.1| bifunctional protein FolC [Finegoldia magna ACS-171-V-Col3]
          Length = 415

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 133/381 (34%), Gaps = 47/381 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ V GT+GK S ++F+ Q  +  G  +        I+ + +       S     +   
Sbjct: 40  KIIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFMRIFE 99

Query: 176 -------------------------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                                    Y + Q   +V +E    G         + +    T
Sbjct: 100 IIKNTIEENDIKVSTFEFITLCAIYYFAEQKCEYVVLEVGMGGRLDATNATDETLLSVIT 159

Query: 211 NLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            +G DH +Y   T +     K  + ++        ++Y       +V +         L 
Sbjct: 160 KIGLDHQEYLGNTLEEIAYEKACIMKQ----NGRCVVYDQQESVLDVFREVAEERNNKLY 215

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI----AI 325
           +    +  +++     +       S + K+      L G +Q++NA +A          +
Sbjct: 216 ICDFDEAKNIEINATHN-------SFDWKNLHIETRLVGRYQLFNAQLALTAIDILRDEL 268

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    ++   +  + +P RF+ +        +  D  H ++ ++  LK+      G   
Sbjct: 269 DLSDEDIINGFKNAY-IPARFDVI---RHNPTVIYDGGHNADGVKA-LKSSIESVFGDKK 323

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +VF  G  +D+     +  I  +       T D+PR+   E ++ +I       + K N 
Sbjct: 324 IVFVYGVLKDKDYNDEIKLIHENAKAFVTFTPDSPRALKAEDLKKQIEVYSDKVVAKSNV 383

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A+  AIE   K DV+++ G
Sbjct: 384 NDAVDYAIEHF-KDDVIIIFG 403


>gi|33242268|ref|NP_877209.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
 gi|33236779|gb|AAP98866.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 809

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 150/438 (34%), Gaps = 67/438 (15%)

Query: 50  VGNK-EDGHL--FIPQAIAQGAEAIVV---SSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
            G +   GH    +P       +A+VV   S A    ++   I+ +              
Sbjct: 48  KGARCFSGHDSSHVPH------DAVVVYSSSIAPDNVEYLTAIQRS------SRLLHRAE 95

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L +  + G      + V+G+ GK+  +S ++ I Q +        P+  I   A +    
Sbjct: 96  LLSQLMEGY---ESILVSGSHGKTGTSSLIRAIFQEAQKD-----PSYAIGGLAANCLNG 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 +  A +  S   + H                     A   TN+  +H++ +   
Sbjct: 148 YSGSSKIFVAEADESDGSLKHY-----------------TPRAVVITNIDNEHLNNYAGN 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKV 282
                  ++ F   +   +      D    K           + +S GY  +   H+   
Sbjct: 191 LDNLVQVIQDFSRKVTDLNKVFYNGDCPILK--------GNVQGISYGYSPECQLHIVSY 242

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   + +  G+++ D    LPG+    NA  A G+ +  GID  ++ + L+K   
Sbjct: 243 NQKAWQSHFSFTFLGQEYQDIELNLPGQHNAANAAAACGVALTFGIDINIIRKALKKFSG 302

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRP 400
           V  R E     S       DYAH    +   L+++R      R+I +F         +  
Sbjct: 303 VHRRLERKNI-SESFLFLEDYAHHPVEVAHTLRSVRDAVGLRRVIAIFQPHRFSRLEECL 361

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPG-------FIEKGNRIEAIRT 451
                A   AD  I+TD     E P +  I +++   I         ++  G+ ++ +R 
Sbjct: 362 QTFPKAFQEADEVILTDVYSAGESPRESIILSDLAEQIRKSSYVHCCYVPHGDIVDYLRN 421

Query: 452 AIEMLNKQDVLVVAGKGH 469
            I +    DV V  G G+
Sbjct: 422 YIRI---HDVCVSLGAGN 436


>gi|118137669|pdb|2F00|A Chain A, Escherichia Coli Murc
 gi|118137670|pdb|2F00|B Chain B, Escherichia Coli Murc
          Length = 491

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 129/409 (31%), Gaps = 52/409 (12%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D    + ++   + V    + L+      +G      +A+ GT GK++  + V  I   +
Sbjct: 91  DNPEIVAAHEARIPVIRRAEXLAELXRFRHG------IAIAGTHGKTTTTAXVSSIYAEA 144

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           GL    +      ++                  ++       + +               
Sbjct: 145 GLDPTFVNGGLVKAAGVHARLGHG------RYLIAEADESDASFL--------------- 183

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++      TN+  DH D +Q            F   LP    A+   DD   +E++ R 
Sbjct: 184 HLQPXVAIVTNIEADHXDTYQGDFENLKQTFINFLHNLPFYGRAVXCVDDPVIRELLPRV 243

Query: 261 HNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318
                +  + G+ +   + ++    I  +   T+  + K+        PG     NA  A
Sbjct: 244 GR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPXRVTLNAPGRHNALNAAAA 300

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IYVDYAHTSNSLE 370
             +    GID   +L  LE       RF+F+G       N + G   +  DY H    ++
Sbjct: 301 VAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAXLVDDYGHHPTEVD 360

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +K  R       ++ +F                  L   D  +  +  P  E P  I 
Sbjct: 361 ATIKAARAGWPDKNLVXLFQPHRFTRTRDLYDDFANVLTQVDTLLXLEVYPAGEAP--IP 418

Query: 430 AEIIHGIPGFIEKGNRIEAI-----RTAIEMLNK----QDVLVVAGKGH 469
                 +   I    +I+ I         E L       D+++V G G+
Sbjct: 419 GADSRSLCRTIRGRGKIDPILVPDPARVAEXLAPVLTGNDLILVQGAGN 467


>gi|118444015|ref|YP_877138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           novyi NT]
 gi|158512394|sp|A0PXN6|MURD_CLONN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118134471|gb|ABK61515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium novyi
           NT]
          Length = 458

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 127/358 (35%), Gaps = 43/358 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  I  +TG+ GK++  + V  I    G  ++  G                    
Sbjct: 111 FIKYCPAKIFGITGSDGKTTTTTLVYNILMTEGYKTWVGGNIGNP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +  +    V +E SS  L   + +         TNL  +H+D H+    Y +
Sbjct: 156 -LFSNIEEMKEE--DKVVLELSSFQLMTMKEEI---NCALVTNLSPNHLDIHKDMDEYVD 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+     +   ++  D+  +  ++K A +            +F   +++ +    
Sbjct: 210 AKKNIFKYQEVND-LLVLNRDNDITNSLVKEAKSRVM---------QFSRKEEIESGAYL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               + + GK+   L    L G   V N L A    ++       + +       V  R 
Sbjct: 260 NGDKLVLLGKEVCALEDIKLKGMHNVENLLAAF-CLVSEDASIESMAKVATTFTGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EFV     G + Y D   +S +     + I  + +    V+   GG         + +  
Sbjct: 319 EFV-REIDGVKYYNDSIASSPT-----RTIAGLRAFEKPVILIAGGYDKHIPFEPLAEEG 372

Query: 407 LDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           LD     ++T    N   +  +K   +    IP ++E G   EAI  A ++ N+ D++
Sbjct: 373 LDKIQALVLTGLTKNKIKDAFDKAMKDRGINIPIYMEDGFN-EAIYRAKDIANEGDII 429


>gi|255527653|ref|ZP_05394513.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296186918|ref|ZP_06855319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|255508666|gb|EET85046.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296048632|gb|EFG88065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
          Length = 458

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 137/390 (35%), Gaps = 48/390 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  VTG+ GK++  + +  I ++ G  ++  G   T                
Sbjct: 111 FIKYCPAKVYGVTGSDGKTTTTTLIYNILKQQGYKTWVGGNIGTP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  + S     V +E SS  L       +       TNL  +H+D H+  Q Y +
Sbjct: 156 -LFTEIEKMKSD--DKVVLELSSFQLMTM---NVSPEVAVVTNLSPNHLDIHKDMQEYID 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K  +F+     ES  I+  D+  +  +   A     RVL    + K     K  A   +
Sbjct: 210 SKKNIFKYQ-QSESLLILNRDNNLTNSMFNEAKG---RVLEFSIKEKV----KDGAYFEE 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++ I  +         + G   V N L A    ++  ++   + +       V  R EF
Sbjct: 262 NKLYIKEKEVCKLNEIQIKGMHNVENLLAAF-CAVSDDVNIENMRKTAISFTGVEHRCEF 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +     G + Y D   TS S     + +  + +    V+   GG   +    ++ +   +
Sbjct: 321 I-REIDGVKYYNDSIATSPS-----RTLAGLKAFEKPVILIAGGYDKKIPLDVLAEEGYE 374

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVL 462
                I+          +KI+      +         + + +  +A+ +A     + D++
Sbjct: 375 NIKALIL-----VGATKDKIKDAFSKVMKKKNIEIPMVIEESLEKALSSARGFAKEGDII 429

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                   +  +  N E + +   ++++E+
Sbjct: 430 -TLSPACASFDMFPNFEARGNKFKELVKEL 458


>gi|168789615|ref|ZP_02814622.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
 gi|261226845|ref|ZP_05941126.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255249|ref|ZP_05947782.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|189370788|gb|EDU89204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KFSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GVQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|15618814|ref|NP_225100.1| muramate-Ala ligase & D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           CWL029]
 gi|15836438|ref|NP_300962.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
 gi|16752131|ref|NP_445498.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|6919933|sp|Q9Z701|MUDD_CHLPN RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|4377225|gb|AAD19043.1| Muramate-Ala Ligase/D-Ala-D-Ala Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189873|gb|AAF38741.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979279|dbj|BAA99113.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
          Length = 809

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 150/438 (34%), Gaps = 67/438 (15%)

Query: 50  VGNK-EDGHL--FIPQAIAQGAEAIVV---SSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
            G +   GH    +P       +A+VV   S A    ++   I+ +              
Sbjct: 48  KGARCFSGHDSSHVPH------DAVVVYSSSIAPDNVEYLTAIQRS------SRLLHRAE 95

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L +  + G      + V+G+ GK+  +S ++ I Q +        P+  I   A +    
Sbjct: 96  LLSQLMEGY---ESILVSGSHGKTGTSSLIRAIFQEAQKD-----PSYAIGGLAANCLNG 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 +  A +  S   + H                     A   TN+  +H++ +   
Sbjct: 148 YSGSSKIFVAEADESDGSLKHY-----------------TPRAVVITNIDNEHLNNYAGN 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKV 282
                  ++ F   +   +      D    K           + +S GY  +   H+   
Sbjct: 191 LDNLVQVIQDFSRKVTDLNKVFYNGDCPILK--------GNVQGISYGYSPECQLHIVSY 242

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   + +  G+++ D    LPG+    NA  A G+ +  GID  ++ + L+K   
Sbjct: 243 NQKAWQSHFSFTFLGQEYQDIELNLPGQHNAANAAAACGVALTFGIDINIIRKALKKFSG 302

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRP 400
           V  R E     S       DYAH    +   L+++R      R+I +F         +  
Sbjct: 303 VHRRLERKNI-SESFLFLEDYAHHPVEVAHTLRSVRDAVGLRRVIAIFQPHRFSRLEECL 361

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHGIPG-------FIEKGNRIEAIRT 451
                A   AD  I+TD     E P +  I +++   I         ++  G+ ++ +R 
Sbjct: 362 QTFPKAFQEADEVILTDVYSAGESPRESIILSDLAEQIRKSSYVHCCYVPHGDIVDYLRN 421

Query: 452 AIEMLNKQDVLVVAGKGH 469
            I +    DV V  G G+
Sbjct: 422 YIRI---HDVCVSLGAGN 436


>gi|293417964|ref|ZP_06660586.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
 gi|291430682|gb|EFF03680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KISGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|82775495|ref|YP_401842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           dysenteriae Sd197]
 gi|309787236|ref|ZP_07681848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
 gi|118595691|sp|Q32K04|MURD_SHIDS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81239643|gb|ABB60353.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella
           dysenteriae Sd197]
 gi|308924814|gb|EFP70309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GVQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------KTETMEQAMRLLAPRVQPGDMVLL 410


>gi|294501560|ref|YP_003565260.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551]
 gi|295706908|ref|YP_003599983.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319]
 gi|294351497|gb|ADE71826.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551]
 gi|294804567|gb|ADF41633.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319]
          Length = 433

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/402 (17%), Positives = 122/402 (30%), Gaps = 48/402 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +A+          ++   + +    +FL  F  +         +AVTG  GK+S  
Sbjct: 64  VIAGNAFPDTHEEIAEAASKEGVKLVRYHRFLGDFMKQY------TSVAVTGAHGKTSTT 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG   T             +  Y    LSY              
Sbjct: 118 GMLAHVIQGAEPTSYLIG-DGTGKGVKDSKYFAFEACEYRRHFLSY-------------- 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A   +  ++   +   I   DD
Sbjct: 163 ------------TPDYAIMTNIDFDHPDYFANIDDVFSAFQEMALQV---KKGIIACGDD 207

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            + +++  +          +G +  F     V +                 F  P  G+ 
Sbjct: 208 EHLQQIQAKVPVLY---YGLGEENDFQARNIVKSTTGTTFDVFVRNTFHASFEIPGYGDH 264

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NAL    LC    ID A++ E  +    V  RF       +   +  DYAH    + 
Sbjct: 265 NILNALSVIALCHYEEIDVAVLQERFKTYQGVKRRFSEKNVGKQ--VLIDDYAHHPTEIN 322

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI 428
             +   R    +  ++ VF                 +L  AD   + D      E   K+
Sbjct: 323 ATISAARQKYPNREVVAVFQPHTFTRTQTFLEDFAASLQHADKVYLCDIFGSAREHQGKL 382

Query: 429 -RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              ++   I G        E I +  +      VLV  G G 
Sbjct: 383 SIEDLRSKISGAELI--NEETIESLKDHNEA--VLVFMGAGD 420


>gi|290473427|ref|YP_003466293.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus bovienii SS-2004]
 gi|289172726|emb|CBJ79497.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus bovienii SS-2004]
          Length = 456

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 116/370 (31%), Gaps = 39/370 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYKPGFL--IGGVPGNFDVSAQIGESPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +                               NL  DH D  +   A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYG------------PRTLIMNNLEFDHADIFENLAAVQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P     ++  +D   K V+         +  VG  G +   K        Q   
Sbjct: 207 LV-RVVPGSGKILVPDNDINLKHVIGM--GCWSELEHVGETGNWQTKKVSQDSSIYQ--V 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                +  +  + L GE  ++N L+A      +G+  A   + L        R E  G  
Sbjct: 262 FHQSEQVGEVNWSLVGEHNMHNGLIAIAAAHHVGVQPADACQVLGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDL 409
             G  +Y D+AH   ++ + L  +R+   G  RI+ V          G        +L  
Sbjct: 321 VNGISVYDDFAHHPTAILVTLAALRSKVGGVARILAVLEPRSNTMKMGMSKNDIAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           AD   +         P  I    AEI             I+A +R  +E     D +++ 
Sbjct: 381 ADEVFLYQ-------PANIPWQVAEIAEHCIQPARWSADIDALVRMIVEAAQPGDYILIM 433

Query: 466 GKG-----HE 470
             G     HE
Sbjct: 434 SNGGFDGIHE 443


>gi|302344981|ref|YP_003813334.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella melaninogenica
           ATCC 25845]
 gi|302150216|gb|ADK96478.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella melaninogenica
           ATCC 25845]
          Length = 458

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 124/364 (34%), Gaps = 47/364 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L   GT GK++ +     +  +S L          +   +++               +Y+
Sbjct: 115 LCFAGTHGKTTTSCMCAHLMHQSHLDCNAF-----LGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S     V +EA       H L   +      T+   DH+D + T++AY  +  R + EL
Sbjct: 158 LSDHSDFVVIEADEFDRSFHWL---RPWMSVITSTDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + K    II       ++ ++   N     R+          H + +   +         
Sbjct: 214 IQKGGALII-------RKGLEMKPNVQEGVRIYEYSRDEGDFHAENIRIANGTITFDFVS 266

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             ++  D     P    + N + A  +    G  +  +   ++    V  RF+F   ++R
Sbjct: 267 PIENIKDIELGQPIPINIENGISAMAMAQLNGCTAEELRNGMKTYGGVDRRFDFKIKDNR 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                 DYAH    +    K+++      ++  +F                 AL   D  
Sbjct: 327 H-VFLSDYAHHPKEILQSAKSLKELYADKKVTAIFQPHLYTRTRDFYKEFAEALSHFDEV 385

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVA 465
           ++T+  P  E+P      E I   +   +   + K +        ++ +  +  DVLVV 
Sbjct: 386 VLTEIYPAREEPIPGVTSELIYDNLSPNVKKQMIKKD------DVLDFVKSRNFDVLVVL 439

Query: 466 GKGH 469
           G G+
Sbjct: 440 GAGN 443


>gi|313887151|ref|ZP_07820847.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923380|gb|EFR34193.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 457

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 105/359 (29%), Gaps = 47/359 (13%)

Query: 82  FSATIRSNTPIL--------VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++  I  + P L         V    + L + A           LAV G+ GK++  + +
Sbjct: 72  YTPAIPHDHPELCYLRSHHFRVLKRAEALGVIAENY------RTLAVAGSHGKTTTTNML 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I   +     ++G T+ I   A D                        H  +      
Sbjct: 126 SHILDGA----QEVGCTAFIGGLAVDTGSNFIYS---------------DHSDLLVVEAD 166

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   +       T+   DH+D +     Y  A    F   +      ++       
Sbjct: 167 EYDRSFLHLNPYMAVVTSTDADHLDIYGDYAGYL-AGFEQFCSQIEPGGTLLMKEGLPIK 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPG 308
             + +     G R L+ G+            + +   +       +           +P 
Sbjct: 226 PHLAE-----GVRTLTYGHAPTADAYYDHVTVGDGT-IRFDWHYPEAGLHLEQVRLGVPV 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA  A  +    G+    ++  +E       RFE V    R   +  DYAH    
Sbjct: 280 RTNLENATAAMTIAYLNGVAPDDIVRGVESFRGTKRRFELVLQTDRH-LLIDDYAHHPVE 338

Query: 369 LEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           L+  +++I+ I     ++ +F                 +L   D  IV D  P  E+P 
Sbjct: 339 LDSSIRSIKEIYGSEDVLAIFQPHLYSRTADFYKDFAQSLSHVDQVIVLDIYPAREEPM 397


>gi|158320410|ref|YP_001512917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
 gi|167017286|sp|A8MH34|MURD_ALKOO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158140609|gb|ABW18921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
          Length = 454

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 162/400 (40%), Gaps = 51/400 (12%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKF------LSLFASRLYGKHPENILAVTGTSGKS 127
           S+   L   S  +  + P +  +N R            A RL   H   I+A+TGT+GK+
Sbjct: 68  SAPLDLVVVSPGVPLDIPFI--ENLRARGIEIIGEIELAYRLAQGH---IVAITGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V +I + +G  +  +G                    +++KAL   +      + +
Sbjct: 123 TTTSLVGEIFKNAGRRTHVVGNIGV---------------AFISKALETTAD---DVIVI 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASS  L+   +   +   G+  NL  DH++ H+T + Y  AK  +F+    ++  A+I 
Sbjct: 165 EASSFQLES--IVDFRPQVGAILNLTPDHLNRHKTMENYQKAKFNIFKNQGAED-IAVIN 221

Query: 248 ADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            DD   +E  K+  A        ++  +G F+   K+ A+ +  +  I  +   F     
Sbjct: 222 YDDVKLREESKQIYAKKVYFSRRTLLEEGVFVEDGKIVALKDGHKKEIISKDDIF----- 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NAL A  + +++G+D  ++   L+    V  R E V     G R   D   T
Sbjct: 277 IPGNHNLENALAATAMTLSLGVDIDVIQHTLKTFKGVEHRTEIVDV-IHGVRFINDSKGT 335

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSED 424
           +   +  +K I  I     I++   G D+       +      +  + +  +  N   E 
Sbjct: 336 NP--DASIKGIEGI--NTPILLIAGGYDKGSDFDEFINAFDGKVKHMFVYGETANTLMET 391

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +K+            +  N  EA++ A ++  + D +++
Sbjct: 392 AKKL------NFIDVTKVQNLDEAVKKAYDIAIQGDTVLL 425


>gi|82542692|ref|YP_406639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii Sb227]
 gi|193065871|ref|ZP_03046932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|193070830|ref|ZP_03051763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194429374|ref|ZP_03061899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218693557|ref|YP_002401224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 55989]
 gi|260842324|ref|YP_003220102.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|260853301|ref|YP_003227192.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|260866241|ref|YP_003232643.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|293476748|ref|ZP_06665156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|307311461|ref|ZP_07591103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|118595690|sp|Q326E7|MURD_SHIBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81244103|gb|ABB64811.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella boydii
           Sb227]
 gi|192926458|gb|EDV81091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|192955860|gb|EDV86330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194412594|gb|EDX28891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218350289|emb|CAU95972.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           55989]
 gi|257751950|dbj|BAI23452.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|257757471|dbj|BAI28968.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|257762597|dbj|BAI34092.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|291321201|gb|EFE60643.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|306908440|gb|EFN38938.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|315059311|gb|ADT73638.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           W]
 gi|323157845|gb|EFZ43948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EPECa14]
 gi|323160114|gb|EFZ46075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E128010]
 gi|323171251|gb|EFZ56899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LT-68]
 gi|323176396|gb|EFZ61988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1180]
 gi|323181785|gb|EFZ67198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1357]
 gi|323380131|gb|ADX52399.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           KO11]
 gi|323945717|gb|EGB41765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H120]
 gi|324118438|gb|EGC12332.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1167]
 gi|332098911|gb|EGJ03862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           3594-74]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|295105488|emb|CBL03032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 467

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 113/356 (31%), Gaps = 29/356 (8%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIG----------------A 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L  +S + V    VE SS  L               TN+  +H+D+H+  Q Y +
Sbjct: 157 ALLPMLPEVSPEDVAV--VELSSFQLISM---HASPNIAVVTNVTPNHLDHHKDMQEYID 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +           + Y ++  S+ +             +        L+K   +   
Sbjct: 212 AKRNILLYQKQPCRAVLGY-ENEISRSMQADCKGKQVWFTRLHDTDNGAFLRKEDGMLCM 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +            L G   + N L AA       +    + +       V  R E 
Sbjct: 271 AEDGVVTPFLA-QKDVKLRGLHNIENLLAAAAAVWGE-VPVEAIRQVGSTFTGVEHRIEP 328

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T    G +Y + +  ++    I            +++   G D+     P+  +I   
Sbjct: 329 VRT--LDGVLYYNDSIGTSPTRTIAGLRSFDRK---VILIAGGYDKHIPYEPLAPEIIAH 383

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++ ++    PR E   +  +             N   A+  A       D++++
Sbjct: 384 VKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDIIIL 439


>gi|320449227|ref|YP_004201323.1| folyl-polyglutamate synthetase [Thermus scotoductus SA-01]
 gi|320149396|gb|ADW20774.1| folyl-polyglutamate synthetase [Thermus scotoductus SA-01]
          Length = 413

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 145/401 (36%), Gaps = 49/401 (12%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            V     +   L A     +    +  V GT+GK +VA  +  I + +GL          
Sbjct: 13  WVKPGLERIRVLLARLGNPQEAYPVALVGGTNGKGTVARALAAILEEAGLRVGLYTSPHL 72

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH------GLDQHRLDGIKLIA 206
           +    ++       PI     LS L        S+EA+         L     +G++   
Sbjct: 73  VD--FRERVAIQGQPISQEAVLSLLEEIRPQAESLEATFFEVATALALLHFAREGVEFAV 130

Query: 207 -------------------GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
                                 TN+G DH++    T +     K  +F + +P  + A  
Sbjct: 131 LEVGLGGRFDATNAAEPQLSVVTNIGHDHLEILGPTLRDVAREKAGIFRKGVPALTAAR- 189

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                  +E+ +RA   G  +  +G +     L  V A+       + + G++  F   L
Sbjct: 190 ---GEGLEELRERARAMGTPLWVLGEE---FSLLGVEALGEGLAFRLRIRGEERTFRTRL 243

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  Q  N  +AA     +G     V + L +     GR E +     G ++ +D AH  
Sbjct: 244 LGPHQAENLALAAVSGRLLGAGWEAVEKGLLRAENP-GRLERLPWPG-GKKLLLDGAHNP 301

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDP 425
                + + +R    G +      G  R++  R +    AL      ++T   +PRS+DP
Sbjct: 302 EGAWALRQALRFH--GLLPAALVLGFSREKDHRAM--AEALKGLGPVVLTRYASPRSQDP 357

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 ++   PG + +   ++A+  A  + N+   +VVAG
Sbjct: 358 RA----LLPLFPGALVEEEPLKAVERAFTLENR---VVVAG 391


>gi|312136564|ref|YP_004003901.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224283|gb|ADP77139.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 492

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 100/509 (19%), Positives = 186/509 (36%), Gaps = 105/509 (20%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIV--GNKED--GHLFIPQAIAQGAEAIVVSS 75
           I   +  +  ++++  D+ +++   IF      G K D  GH      I + A+AI ++ 
Sbjct: 24  ILKSKGNDVTVSDIRKDT-YLK--DIF---KSEGIKLDLGGHD--LSLIKK-ADAIAIAP 74

Query: 76  AYSLQDFSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           + +       + +  P   ++ +++  K+          K  + ++ +TGT+GK++    
Sbjct: 75  SLTNNKKVLNLINKNPKAELIKIEDILKY----------KVKKPVVGITGTNGKTTTREM 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++ I + SGL               + +     +  ++    + L         VE  + 
Sbjct: 125 LKNILKISGLEV------------PEHHLNIQGNTEFIPPLQARLPG---DVAVVEIGTF 169

Query: 193 G---LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           G     +       +  G  TN+ RDH+    + Q Y   K  + E         ++ AD
Sbjct: 170 GVKNEIKRSAKNSNVTVGVITNISRDHLKNI-SFQEYVECKKEITE----VAKKLVLNAD 224

Query: 250 DA------------YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-------- 289
           D             Y  E +K             + GK +  +++   H  +        
Sbjct: 225 DPIVASFGNDNTVYYGIENLKIKIKHFFEDRDCPFCGKNLKYEEIFLGHLGKYECECGFK 284

Query: 290 --------------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                         +  +S++  +        G F VYNAL AA     + ID   ++E 
Sbjct: 285 RPRPTVKAIDVENKKFILSIDSNEGLVKLEYGGIFNVYNALAAAAAAFILKIDFDKIIEG 344

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     VPGR E +    +   I +DYAH    ++ IL+ I+    GR+IVV     +  
Sbjct: 345 LNTFKKVPGRMEKI---YKKPEIIIDYAHNVAGVKAILQTIK--PKGRLIVVNTISSESG 399

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRS------------EDPEKIRAEIIHGIPGFIEKG 443
             +   + KI L  ADI I    + R             +  EK   +   G   F  + 
Sbjct: 400 IKEDIKIAKI-LSSADILIPASYSARKASKYTNTTVINVKSTEKKFKKGTLGASKFQVE- 457

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
              EAI+ A+   +K D +++ G+G    
Sbjct: 458 ---EAIKKALSYADKNDTILIIGEGGVKY 483


>gi|308272541|emb|CBX29145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 481

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 99/286 (34%), Gaps = 21/286 (7%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               +    T++  DH D  +  +       R+ E++ P  S  +   D      +    
Sbjct: 188 HFDPLIAILTSIEFDHADIFRDLEHVKETFSRMIEKISPGSSLIVFDRD----TNIKSLI 243

Query: 261 HNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
            N+ C++   G        L             +  +GK F  F   L GE  + NAL  
Sbjct: 244 RNSSCKIEKYGKNSDSDWKLGSFRVEPPWTFFEVMKKGKAFGSFKTKLIGEHNLLNALSV 303

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 + +    + + LE    V  R E  G   +G  +  D+AH   +++  +K +R 
Sbjct: 304 IAAADNLKVPVDTIHDALETFEGVKRRQEIRG-ERKGITVMDDFAHHPTAVKETIKAVRP 362

Query: 379 I-TSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVT-----DDNPRSE--DPEKIR 429
               GR+I VF    +    K    +  ++ D ADI  ++        P  E    EK+ 
Sbjct: 363 FYPDGRVIAVFEPRTNSSMRKVFQDVYPLSFDKADIVCISKPPLLGKIPFDERFSSEKLV 422

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HE 470
            ++           N    I   ++     D++++   G     HE
Sbjct: 423 QDLKIMGKDAYFFSNTQAIIDFIVKAGKSGDLVLIMSNGGFENIHE 468


>gi|58038639|ref|YP_190603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Gluconobacter oxydans 621H]
 gi|58001053|gb|AAW59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Gluconobacter oxydans 621H]
          Length = 373

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 126/374 (33%), Gaps = 33/374 (8%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            L         +    ++A+TG+ GK++    ++      G +   +             
Sbjct: 3   ALVDLGRNARARFRGKVVAITGSVGKTTTKDMLKVALSAIGPTHAAV------------- 49

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             +  +   +   L+ L       +S    +H G        ++      T +G  H+ +
Sbjct: 50  -ASYNNHWGVPLTLARLPQDARFCISEIGMNHIGEIAPLAAQVRPDVAIITTIGTAHLGH 108

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-H 278
             + +A    K  LF  L   +    I  DDA  +E  + A  AGC +   G+       
Sbjct: 109 MGSIEAIAQEKSDLFSAL--SDKGIAIVPDDAAGQEHFQTALPAGCALWRSGFSETAQLR 166

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++ +         ++ +     +     PGE    NA +A G   A+G D A+    L+ 
Sbjct: 167 IENLHCSAEGSHFSLHLPSGIQNVTLTAPGEHLARNAALALGAVAALGEDVAVAATALQN 226

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
                GR +     +    +   Y  ++ S+   L  +  + + R I   G   +     
Sbjct: 227 FVPGAGRGQMRTILNDVRLLDESYNASTPSVRAALATLALLPAQRHIAALGDIRELGTFA 286

Query: 399 RPIMGKIALDLAD---IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--- 452
                 +A  + +   IA     + R          +   +P  ++ G   +A   A   
Sbjct: 287 DAEHRSLADAVQNAKAIAFCCGPHMR---------ALYDALPSELQGGYAADAASLAPLL 337

Query: 453 IEMLNKQDVLVVAG 466
           ++ L   D+L+V G
Sbjct: 338 LKALRPGDLLLVKG 351


>gi|307132698|ref|YP_003884714.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Dickeya dadantii 3937]
 gi|306530227|gb|ADN00158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Dickeya dadantii 3937]
          Length = 460

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 124/361 (34%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+ GT GK++ A  V  I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVIAIAGTHGKTTTAGMVTWILEDCGYQPGFV--IGGVPGNFTVSARLGESPFFVVEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +           S                   NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYS------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+ + D + K+VM            VG +G     KKV    +  QV ++
Sbjct: 209 -RLVPGKGRIIVPSHDLHLKQVMGM--GCWSEQELVGEEG-IWKAKKVTTDASVFQVYLN 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +    +  + L GE  ++N L+A      +G+  A     L        R E  GT + 
Sbjct: 265 -DQLVGEVSWNLVGEHNMHNGLMAIAAARHVGVTPAEACRALGGFINARRRLELRGT-AH 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R+   G  RI+ V     +  +          AL  AD
Sbjct: 323 GVSVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGHCKNELAPALGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++       I T +EM        D ++V   
Sbjct: 383 GVFLFQ-------PQHIPWQVAEVADACVQPAYWSADIDTLVEMISKTAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|281421051|ref|ZP_06252050.1| UDP-N-acetylmuramate--alanine ligase [Prevotella copri DSM 18205]
 gi|281404969|gb|EFB35649.1| UDP-N-acetylmuramate--alanine ligase [Prevotella copri DSM 18205]
          Length = 458

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 123/361 (34%), Gaps = 41/361 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V GT GK+S ++    I  +S      I   + +   +++               +Y+
Sbjct: 115 LCVAGTHGKTSTSTMCAHIMHQS-----HIDCNAFLGGISKNYGT------------NYI 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +V +EA       H L   +      T    DH+D + T++AY  +  R + EL
Sbjct: 158 LSDKSDYVVIEADEFDRSFHWL---RPWMSVITATDPDHLDIYGTKEAYLES-FRHYTEL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      II     +    MK+    G ++          H + +   +           
Sbjct: 214 IQPGGALII-----HKGLEMKQHVQDGVKIYEYSQDEGDFHAENIKIENGGITFDFISPI 268

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           ++        P    + N + A  +    G  +  +   ++    V  RF+F    +   
Sbjct: 269 ENVTGVELGQPVPINITNGVAAMAMAQLNGCTADELRNGMKTYGGVDRRFDF-KIKNNKL 327

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               DYAH    +    K+IR +   R I  +F                 +L L D  I+
Sbjct: 328 VFLSDYAHHPKEIYQSAKSIRELYKDRKITAIFQPHLYTRTRDFYKDFANSLSLLDEVIL 387

Query: 416 TDDNPRSEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D  P  E P      + I   +  G+    I K + ++ ++         DVLV+ G G
Sbjct: 388 CDIYPAREQPIPGVTSKLIYDNLKPGVEKSMIHKEDVLDLVKN-----RDFDVLVILGAG 442

Query: 469 H 469
            
Sbjct: 443 D 443


>gi|110801072|ref|YP_697147.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens ATCC 13124]
 gi|168215153|ref|ZP_02640778.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens CPE str. F4969]
 gi|118595650|sp|Q0TMJ3|MURD_CLOP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110675719|gb|ABG84706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens ATCC 13124]
 gi|170713450|gb|EDT25632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens CPE str. F4969]
          Length = 458

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 135/400 (33%), Gaps = 58/400 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +  F     G     +  VTG+ GK++  + V ++  + G  ++  G   T         
Sbjct: 108 MEEFVRYCKG----KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTP-------- 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L   +  +  +    V +E SS  L       +++     TN+  +H+D H+
Sbjct: 156 --------LFSNIEEIKEE--DKVVLELSSFQLMTM---DVEIDVAIVTNITPNHLDMHK 202

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             Q Y +AK  +F+    +    +I  ++  +K + K A     R  S    G+  + K 
Sbjct: 203 DMQEYIDAKKNVFKYQ-RENDLLVINDENEITKNLDKEAKGKVVRFSSKKTAGEDAYYKD 261

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      + V GK+      +  +    V N L A        +    + +  E  
Sbjct: 262 ---------GKLYVHGKEVCKKDDIIIKGMHNVENYLAAFLAVYDE-VSIESMKKVAETF 311

Query: 340 HVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V  R EF+     G + Y D  A T       LK          +++   G D+    
Sbjct: 312 GGVHHRCEFI-REVDGVKYYNDSIASTPTRTLAGLKAFEK-----PVILLAGGYDKHVPF 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKG-NRIEAIRTA 452
            P+  +    +  I +           EKI+A     E   GI   +  G +  E +  A
Sbjct: 366 EPLAYEGYEKIKAIVLF------GVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIA 419

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             +    D++        +  +  N E +     +I+  I
Sbjct: 420 KSIAENGDII-TLSPACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|239994466|ref|ZP_04714990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii ATCC
           27126]
          Length = 452

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 131/412 (31%), Gaps = 48/412 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A+++G      + A           ++ P  ++DN  K                ++ 
Sbjct: 67  IGNAMSRG------NPAVEYVLNRNLPYTSGPQWLLDNLLK-------------DRWVIG 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++GT GK++ +S V  I + +GL+   +     +      +     SP ++ +A  Y S+
Sbjct: 108 LSGTHGKTTTSSMVAWILEHAGLNPGYL--IGGVPENFGVSARVGESPFFVIEADEYDSA 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                                  +       NL  DH D      A    +      ++P
Sbjct: 166 FFDKRSKFVHY------------RPKTLVINNLEFDHADIFADLGAI-QTQFHHLVRMVP 212

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
           +    +   +    ++++K+   +  + L     GK  H + +       +  +   G  
Sbjct: 213 ENGLILTPNNTPAIEDMLKKGCWSSRQSL-----GKEWHAELLKKD--GSEFNVLHNGVI 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                + L G+  V NAL+A       G+     ++ L     V  R E V        +
Sbjct: 266 AGTVTWALVGQHNVDNALMAIAAAHHAGVTLPDAIDALSFFKNVKRRME-VKGEVNNITL 324

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVT 416
           Y D+AH   ++   L  +R       I+                  +A     AD   + 
Sbjct: 325 YDDFAHHPTAIATTLDGLRKKVGNARILAVLEPRSNTMKMGVHKDTLANSWQKADEVYLY 384

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  P   D   +   + H         +  + ++    +    D ++V   G
Sbjct: 385 E--PEGMD-WSLVDSVAHSNAPTHCFRDVEKIVQGVCNVAQPGDHILVMSNG 433


>gi|228914793|ref|ZP_04078402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845112|gb|EEM90154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 252

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 16/183 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  +  DGH +
Sbjct: 10  MNLKKL-----EEVINGEGLH-ESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHEY 61

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+  GA A +   +Y       +     PI+ VD+T   L   A     +    ++ 
Sbjct: 62  VKEAMDNGAIASLWKKSYG------SPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIG 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++V   ++ I + +       G  ++                +L   +  +S 
Sbjct: 116 ITGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEM-GMSE 174

Query: 180 QGV 182
           +G 
Sbjct: 175 KGC 177


>gi|72382768|ref|YP_292123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL2A]
 gi|122063254|sp|Q46JA8|MURD_PROMT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72002618|gb|AAZ58420.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL2A]
          Length = 469

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 142/412 (34%), Gaps = 57/412 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILV---VDNTRKFLSLFASRLYGKHPENILAV--- 120
           G   I++  A  + +F+  I S   I V   +D     L     +      E  LA    
Sbjct: 56  GINVILLDEALHINNFTPWIESVCSITVSPGIDWEHIALKELRGKNINVQGEVALAWERL 115

Query: 121 --------TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                   TGT+GK++V + +  I + + L++   G      S      +          
Sbjct: 116 THIPSVGITGTNGKTTVTNMLNHILKLNNLNTDMGGNVGKALSKIALENMKNNDQELDWL 175

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L   S Q      +E S           +    G +T    DH++ H   ++Y     +
Sbjct: 176 VLELSSFQ------IEGS---------PKVAPTIGIWTTFTPDHLERHNDMESY----FK 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-----RVLSVGYQGKFIHLKKVCAIHN 287
           +   LL K S  I  +DD Y     K            + L   YQ  +I  K       
Sbjct: 217 IKRSLLEKSSIRIYNSDDQYLSSKRKELPKGIWVGTNQQSLYSQYQKFWIDQKGYIFEDK 276

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           KQ    S+          +PG+  + N L+A      IG+D + + + ++    +P R E
Sbjct: 277 KQLFHSSI--------LNIPGKHNLQNLLLAIAAAREIGLDDSSIAKSIKSFKSIPHRLE 328

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           ++G N      Y D   T+   +  +  ++++     I++   G  +     P + +I  
Sbjct: 329 YLG-NVNNLSFYNDSKATN--FDSSITALKSVPHP--IILLAGGIQKKGDFMPWVKQIKQ 383

Query: 408 DLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
               I +     N   E+       I   I   I K N  EA   +I +  +
Sbjct: 384 STNGIVLFGLSANNLKEEL-----LISSYIGEIIVKKNLEEATIASINIARE 430


>gi|308233779|ref|ZP_07664516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium vaginae
           DSM 15829]
 gi|328943772|ref|ZP_08241237.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
 gi|327491741|gb|EGF23515.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
          Length = 493

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 110/332 (33%), Gaps = 26/332 (7%)

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           I    + +     +   + +A        +      A            +   A    N+
Sbjct: 131 IEHMIRADHKQACAVGNIGRACLGEVDHHLADTWFVAELSSFQLAETKLLHPHAAILLNI 190

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DHI++H + QAY  AK R+F  L   +  AII  DD Y K +  R    G   + V  
Sbjct: 191 TPDHIEWHGSMQAYAAAKERIFANLT-TDDLAIISRDDLYCKAIYSRLVERGLSPVCVDT 249

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGID 328
                 L+   A  +   + + + G     +      L G   + N L A+ L + IG+ 
Sbjct: 250 SQDPKTLQA--AYCSDSMLYVRLNGTTTPLIKASEAALKGMHNIQNMLAASALALFIGVS 307

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              + + L+    +  R E+V T      +    A  ++S+E  L        G  IV+ 
Sbjct: 308 VDAIRQVLQTFTTLEHRLEYVATIHGVSFVNDSKATNTDSVEKALTA---FPCGSTIVLL 364

Query: 389 GCGGDRD-------QGKRPIMGKIALDLADIAI----VTDDNPRSEDPEKIRAEIIHGIP 437
           G    +        Q  R   G I    A   I    V+  N ++ D E    +    + 
Sbjct: 365 GGHDKQTDLSSLVHQVVRKCRGAICFGEAGQRIYHELVSVQNAQASDGEGACDKCKSAVA 424

Query: 438 G-----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                      +  +A   A+        +++
Sbjct: 425 SAPLSFVKCVPHLRDAFDCAVTHAKPHTTVLL 456


>gi|148826251|ref|YP_001291004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
 gi|166224762|sp|A5UCX0|MURD_HAEIE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148716411|gb|ABQ98621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
          Length = 437

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 128/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAEVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K       N   + +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---KLTFGEGENQARQTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  A+GI+   +   L     +  RF+     +  G  +++ +  +N   
Sbjct: 269 NYMNILAATALAQAVGINLDAIRTALRHFKGLDHRFQLAHQAN--GVRWINDSKATNVGS 326

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +         G++ ++   G  +      +   I            D           A
Sbjct: 327 TVAALSGLYVEGKLHLLL-GGDGKGADFSELAELINQPHIICYCFGRDG----------A 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +AI      L   D++++
Sbjct: 376 LLAKLSSQSYLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|114330275|ref|YP_746497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
 gi|122314675|sp|Q0AJD9|MURD_NITEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|114307289|gb|ABI58532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
          Length = 470

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 140/397 (35%), Gaps = 37/397 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AI +S   ++ +          + V+ +   F    A   +      ILA+TG++GK++V
Sbjct: 70  AIAISPGVAIAEPLVQAALQQGVSVIGDIELFA--IALDQHAPPGTKILAITGSNGKTTV 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           A+ V ++ + +G      G    I   A D  +                        +E 
Sbjct: 128 ATMVGEMARNTGWDVEVAG---NIGLAALDALMQRIDTGKWPHL-----------WVLEL 173

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      ++  A    NL  DH+D ++  + Y  AK R+F +        ++  +
Sbjct: 174 SSFQLE--TTSSLRPNAAVVLNLSEDHLDRYRIIEEYAAAKARIFPDP-HNSCVQVLNRE 230

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           DA    V   AH    + L+ G         +   + +   + ++        +  L   
Sbjct: 231 DA---RVYAMAHE-NSKQLTFGLSAPAFD-DEFGVLPSGSDLWLAQGTTRLMKVSELAVA 285

Query: 310 --FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 NAL A  LC AI +    +L  L     +P R + +      G  + D + ++N
Sbjct: 286 GLHNAANALAALALCRAIDLPFEPLLHALHIFKGLPHRMQKIAE--FNGVTFYDDSKSTN 343

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
               +   +        +++   G  + Q   P+   ++     + ++        D EK
Sbjct: 344 VGSAV-AALNGFRKN--VILIAGGDGKGQDFSPLEQPVSKHTRGVVLL------GRDAEK 394

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   I              EA+R +  +  + D +++
Sbjct: 395 ISQAIQGCNVPVHRVATMDEAVRVSFLLAERGDSVLL 431


>gi|322390085|ref|ZP_08063620.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           ATCC 903]
 gi|321143212|gb|EFX38655.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parasanguinis
           ATCC 903]
          Length = 444

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 102/346 (29%), Gaps = 39/346 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVAS 131
                L   +A    N   +   +             G+   + +++   G  GK+S   
Sbjct: 60  EGDKILIAGNAFRPDNNVEIAYADEHGLTYKRYHEFLGEFMRDFVSMGVAGAHGKTSTTG 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +      +S+ IG  +   S A    +                         E   
Sbjct: 120 MLSHVLSNITDTSYLIGDGTGRGSAAAKYFVFESD---------------------EYER 158

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H +  H            TN+  DH DY  + +  FNA     +++        IY +D 
Sbjct: 159 HFMPYH------PEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQI---SKGLFIYGED- 208

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
             KE+ +   +A         +        +          +   G+D   F  P  G  
Sbjct: 209 --KELRRITSSAPIYYYGFDKETNDFVASNLLRSTTGSTFNVHFRGEDLGQFHIPTFGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA    GL    G D  LV E L+    V  RF     N  G  I  D+AH    + 
Sbjct: 267 NIMNATAVIGLLYIAGFDLDLVREQLKTFAGVKRRFTEKVVN--GTVIIDDFAHHPTEII 324

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             L   R    S  I+ +F                 AL+ AD   +
Sbjct: 325 ATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNQADAVYL 370


>gi|146299568|ref|YP_001194159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
           johnsoniae UW101]
 gi|146153986|gb|ABQ04840.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
           johnsoniae UW101]
          Length = 443

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 124/352 (35%), Gaps = 42/352 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            + +TG++GK++       + + +GL+    G      SFA            L   LS 
Sbjct: 103 TIGITGSNGKTTTTMLTHHLLKSAGLNVGLGGNIG--KSFAWQVAENKYDAYVL--ELSS 158

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFE 235
               G+                    +      TN+  DH+D ++ + + Y N+K R+  
Sbjct: 159 FQLDGIIDY-----------------RPDIAIITNISPDHLDRYEYKYENYINSKFRI-T 200

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +    I  ADD  S E +K  +    +++       F     +       ++ I +
Sbjct: 201 MNQTESDYLIYDADDEASTEWLKN-NKTKAKLIPFSLTKTFDEGASIN----NNKMEIKI 255

Query: 296 EGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             ++F        L G+  + NA+ A+ +   + I +A + E L     V  R E V   
Sbjct: 256 NQEEFTMETEHIALEGKHNMKNAMAASSVAKLMQIRNATIRESLSNFQGVEHRLEKVLKI 315

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I    A   N        + ++    + +V   G D+      +M  +   +  I
Sbjct: 316 QNVQYINDSKATNVN---ATFFALDSMNVPTVWIV--GGVDKGNDYNELMSLVREKVKAI 370

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN       KI       +   +E  N  +A++TA  +  K D +++
Sbjct: 371 ICLGIDN------RKIIDAFGAVVDIMVEVNNMNDAVKTAQRLTEKGDAVLL 416


>gi|301169876|emb|CBW29480.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae 10810]
          Length = 437

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 132/397 (33%), Gaps = 59/397 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIY----HNAEVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLP 307
              K       N   + +S         LK       +  K +V +  E         L 
Sbjct: 215 ---KLTFGEGENQAKQTVSFAENSADYWLKTENGKQYLMAKDEVILPCE------EVTLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+GI+   +   L     +  RF+     + G R   D   T+ 
Sbjct: 266 GRHNYMNILAATALAQAVGINLDAIRTALCHFKGLDHRFQLAH-QANGVRWINDSKATNV 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
              +       +     +++ G G   D        ++A  +    I+        D   
Sbjct: 325 GSTVAALAGLYVEGKLHLLLGGDGKGADFS------ELAELINQPQIIC--YCFGRD--- 373

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A++              +AI     +L   D++++
Sbjct: 374 -GAQLAKLSSQSHLFETMEQAIAFLRPILQSGDMVLL 409


>gi|238786721|ref|ZP_04630522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
 gi|238725089|gb|EEQ16728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  I +V +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSDAADAGIEIVGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                        AL+ L  +    V +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGV-------------------PALTLLKQEN-QLVVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 212 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  +  L+ L     +P RF+ V  ++    I    A 
Sbjct: 263 KLSGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLVFEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +      +   +  +   I     D    E 
Sbjct: 323 NVGSTEAALDGLQ--VDGTLHLLL-GGDGKSADFSGLTRFLQGEHIKIYCFGRD---GEQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 377 LAELRPEVSQ------LTETMEQAMVLLAKNLAPGDMVLL 410


>gi|261839440|gb|ACX99205.1| UDP-MurNAc-pentapeptide sythetase [Helicobacter pylori 52]
          Length = 493

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 138/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+      T +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   + G+F  YN   A  +   +G+++  +   + + + +  R + +  N + 
Sbjct: 325 GSVWESFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +    D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--PGDLILFA 486


>gi|238797574|ref|ZP_04641071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia mollaretii ATCC 43969]
 gi|238718571|gb|EEQ10390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia mollaretii ATCC 43969]
          Length = 461

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 124/363 (34%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAIAGTHGKTTTAGMVAWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLVMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+  +D + K+VM  A         VG  G ++  +KV    +  +V 
Sbjct: 207 LV-RLVPGKGKIIVPDNDNHLKQVM--AMGCWSEQELVGETGSWL-ARKVSTDASVYEVF 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E    +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDNE-LVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRVLGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  +++      I+  +    I T ++M        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAHWSADIDTLVDMIVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|325288637|ref|YP_004264818.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964038|gb|ADY54817.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 453

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 151/416 (36%), Gaps = 51/416 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S+AY              I +     +FL L  S+  G      + ++GT GK+
Sbjct: 65  ADMIVASAAYDDHHPEIARAKELNIPIYSYP-QFLGLLMSKKCG------ICISGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + + +I   SG+    +   S++ S   + R             +Y  ++   +   
Sbjct: 118 TTTAMIGKILVDSGIDPSIV-VGSSVPSIGGNARAGKG---------NYFVAESCEYR-- 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                   +H L+         TN+  DH DY++       A   L    LP     II+
Sbjct: 166 --------RHFLNY-SPQHLVVTNIEFDHPDYYKDIHDVIAAFQSL-TGKLPANGNLIIW 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            +D    ++  +A      + + G+ +   I  + +   +     ++ +  +     + P
Sbjct: 216 QEDPNRTQIQTKAP-----ITTYGFSEDADIKAENIVYSNGGSIFSVVINKESIGTLMLP 270

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+  + +AL A  L   +GI  + ++  L        RFE +GT   G  I+ DYAH 
Sbjct: 271 VAGKHNILDALAAIALAFRLGIAPSEIIRSLSGFDGTKRRFERLGTK-NGAVIFDDYAHH 329

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              ++  L  +R      RI  VF         K       A  LAD  ++ D    + +
Sbjct: 330 PTEIQTTLDGVRLCFPDRRIRAVFQPHTFSRTEKLLYEFSEAFSLADEVVLADIFSSARE 389

Query: 425 PE---------KIRAEI-IHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +          +   I   GI   +    + I       + L + D+++  G G 
Sbjct: 390 NKTCDSTVSSSNLATLINQKGIDTKYFPTLDEIS--SYLGQTLQEGDLVITLGAGD 443


>gi|320172821|gb|EFW48053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae CDC 74-1112]
          Length = 438

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALVHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|253699155|ref|YP_003020344.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
 gi|259509788|sp|C6DZK4|MURD_GEOSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251774005|gb|ACT16586.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
          Length = 452

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 147/426 (34%), Gaps = 52/426 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS    +      +  +    VV          AS         ++A+TGT+GK+
Sbjct: 69  ADLIVVSPGVPMDIKPLEMARSQKRRVVSEV-----ELASWFIK---APMVAITGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   +I +  G  +F  G                         L  L+  G     V
Sbjct: 121 TTTTLTGEIFKACGFETFVGGNIGN--------------------PLIELAESGQEVARV 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +       N+  DH+D + + Q Y +AK+R+FE     +  A++ 
Sbjct: 161 VVELSSFQLEGVESFRPDVAVLLNITEDHLDRYHSFQEYIDAKLRIFENQT-ADDFAVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LF 304
            DD        +       +  +       H  +    +    +T S +GK   F    F
Sbjct: 220 IDDPLVAACASKLKAQLFPMSRL-------HELEEGISYRDGFITFSHKGKVLRFGTEGF 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   + N + +    + +  D     E ++    +P R E V      G  Y + + 
Sbjct: 273 KLKGVHNLDNIMASLASTLLMRCDGDCAYEAVKSFKGLPHRMELV--EEIDGVAYYEDSK 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +N +  ++K++ +  SG  I +   G D+     P+   +   ++ + ++ +   R   
Sbjct: 331 GTN-VGSVVKSLESFDSG--ITLIAGGKDKGGSYEPLAPLVESRVSHLVLIGEAKAR--- 384

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
                 + +  +    E     EA+  A  +     V++ +     +  +  N E++   
Sbjct: 385 ----MQQALGSLTDTHEAQTLEEAVEIARRLTKPGGVVLFSPACS-SFDMFKNYEERAER 439

Query: 485 DCDIIR 490
               +R
Sbjct: 440 FKAAVR 445


>gi|238754433|ref|ZP_04615788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
 gi|238707262|gb|EEP99624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
          Length = 438

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + +V +   F          ++   I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPALSAAADAGVEIVGDIELF--------CRENQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V ++ + +G      G                        AL+ L  +    V +
Sbjct: 118 TVTMLVGEMAKAAGWQVGVGGNIGV-------------------PALTLLKQEN-QLVVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R+++         ++
Sbjct: 158 ELSSFQLE--TTSSLQATAATILNVTEDHTDRYPFGLQQYRAAKLRIYDN----AKICVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 212 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVSGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A GI  +  L+ L     +  RF+ V  N     I    A 
Sbjct: 263 KLTGRHNYTNALAALALADAAGIPRSSSLKALTTYAGLAHRFQLVFENHGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +      +   +  D   +     D    E 
Sbjct: 323 NVGSTEAALDGL--HIDGTLHLLL-GGDGKSADFSGLTRFLQGDKVQVYCFGRD---GEQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+   +   +E     +A++     L   D++++
Sbjct: 377 LAQLRPEVSQ-LTDTME-----QAVKLLAPTLKAGDMVLL 410


>gi|227115174|ref|ZP_03828830.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 461

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 123/365 (33%), Gaps = 42/365 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTS--TISSFAQDNRLTTPSPIYL 170
             ++AV GT GK++ A  V  I +  G     +  G     T+S+   D+          
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADEY 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A     S+ V +                          NL  DH D     +A     
Sbjct: 163 DCAFFDKRSKFVHYC------------------PRTLVLNNLEFDHADIFDDLKAIQKQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L   L+P     I+ A+D   K+VM            VG +G +   +KV    ++ Q
Sbjct: 205 HHLV-RLVPGSGKIILPANDLNLKQVMGM--GCWSEQELVGEEGTW-RAQKVSIDASQYQ 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V ++ E    +  + L GE  ++N L+A      +G+  A     L        R E  G
Sbjct: 261 VYLNNE-LVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELRG 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--L 407
           T   G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L
Sbjct: 320 TE-HGVTVYDDFAHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSL 378

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLV 463
             AD   +         P  I  +++      ++  +    I T +E         D ++
Sbjct: 379 GRADEVFLFQ-------PTHIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHIL 431

Query: 464 VAGKG 468
           V   G
Sbjct: 432 VMSNG 436


>gi|170766667|ref|ZP_02901120.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia albertii TW07627]
 gi|170124105|gb|EDS93036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia albertii TW07627]
          Length = 457

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 119/363 (32%), Gaps = 38/363 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVW 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGDVKWSLVGEHNMHNGLMAIAAARHVGVSPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVA 465
           AD   +         P  I    AE+             ++A+    ++     D ++V 
Sbjct: 381 ADEVFLLQ-------PPHIPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|110833457|ref|YP_692316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
 gi|118595639|sp|Q0VS04|MURD_ALCBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110646568|emb|CAL16044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
          Length = 441

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 123/355 (34%), Gaps = 52/355 (14%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            E ++A+TG++ KS+V + + Q+    G++    G                        A
Sbjct: 105 SEPLVAITGSNAKSTVTTLLGQVADACGMNPGIGGNLGV-------------------PA 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  L  Q      +E SS  L+      +     +  N+ +DH+D + +   Y  AK R+
Sbjct: 146 LELLDDQ-ARLYVLELSSFQLE--TTYSLSAEVATVLNVSQDHLDRYASFADYLAAKQRV 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQV 291
           ++        A+   DD     +  R      R +S G   +  +    +   +  + + 
Sbjct: 203 YDGC----QVAVWNRDD-----LATRPPATVARQISFGAHPEADYRLDSENGQLLCRGEP 253

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +S+          L G     N L    +  A+ ++    L  ++    +P R + V  
Sbjct: 254 LLSLS------ELALTGHHNAMNILSVLAISDALSLNRDKALATVKTFTGLPHRCQLVAE 307

Query: 352 NSRGGRIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +  G R + D   T+   +L  +     +I    I+V  G G  +D        +  L  
Sbjct: 308 SG-GVRWFNDSKATNVGATLAALTGIGESIEGKVILVAGGLGKGQDFSPLAEPARQYLRA 366

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A +          ED   +   +       +   +   A+R A  +    D +++
Sbjct: 367 ALLM--------GEDRTTVAQGMSAAPCELV--ADMAVAVRRAHALAQPGDAVLL 411


>gi|86749115|ref|YP_485611.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris HaA2]
 gi|118595683|sp|Q2IYL0|MURD_RHOP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86572143|gb|ABD06700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris HaA2]
          Length = 466

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 117/323 (36%), Gaps = 33/323 (10%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V++    L      +S        + V+ +   F      R         +A+TGT+
Sbjct: 67  AALVLTPGVPLTHPTPHWSVLKAREAGVEVIGDVELFCRE---RRLHAPNAPFVAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  + +++G  +   G   T                     LS    +    
Sbjct: 124 GKSTTTALIAHLMRQAGYDTQMGGNIGT-------------------AILSLEPPRAGRV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ +D      +    G   N+  DHID H T + Y   K RL    +     A
Sbjct: 165 HVIEMSSYQIDL--TPSLDPSVGILLNVTEDHIDRHGTIEHYAAVKERLVAG-VQDGGTA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           II  DD + ++   R   AG RV+ +  +      +        +     S E    D +
Sbjct: 222 IIGVDDGFGRDAADRLERAGKRVVRISVKQPLASGITADRETIVQADGGASHEVAKLDGI 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA  AA   +A+G+   ++   L     +  R E VG   +G  ++V+ +
Sbjct: 282 GSLRGLHNAQNAAAAAAAALALGVGPDVLQNGLRSFPGLAHRMEQVG--RQGTTLFVNDS 339

Query: 364 HTSNSLEMILKNIRTITSGRIIV 386
             +N+ +   K + +      I 
Sbjct: 340 KGTNA-DATAKALSSFGEIFWIA 361


>gi|307720865|ref|YP_003892005.1| Mur ligase middle domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978958|gb|ADN08993.1| Mur ligase middle domain protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 481

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 120/354 (33%), Gaps = 46/354 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG+ GK+S+ +F  QI              +T+     D          +      
Sbjct: 162 IICITGSYGKTSIKNFTAQILSHKFKVYATPRSVNTLGGIIADINNNLSQDTEIY----- 216

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                       A   G        ++        +G  HI+Y ++ +     K+ + + 
Sbjct: 217 -------VCEAGARQSGDIYEITTFLEPQTVVVGRVGEAHIEYFKSLKNIIATKLEIMQS 269

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K++       D               +V   G +     +K + A        I +E
Sbjct: 270 PKLKQAFIHTSVTDE-----------PHEKVTFFGDE-----IKNIDAGLEGTDFDIELE 313

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK       + G FQ  N  VA  +  + G+    +++ ++ L  V  R + +     GG
Sbjct: 314 GKTLHLHTDILGAFQTMNIAVAVRIAKSFGLSDDEIIDAVKNLEPVEHRLQLIKA---GG 370

Query: 357 RIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +I +D  +  N ++ +L+ IR  ++  GR ++V     +        + +    + DI I
Sbjct: 371 KIILDDGYNGN-IDGMLEGIRLCSLHKGRKVIVTPGLVESSDELNLKLIEAINKVFDIVI 429

Query: 415 VTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           VT           + AE+      +   I   ++   +          D+++ A
Sbjct: 430 VT---------GSLNAELFDKNLHVKNKIMLKDKSAMVDVLANQTKSGDIILFA 474


>gi|257884456|ref|ZP_05664109.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257887239|ref|ZP_05666892.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257820294|gb|EEV47442.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257823293|gb|EEV50225.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 444

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 121/363 (33%), Gaps = 57/363 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG+ GK+S    +  +      +S+ IG   T     Q    +  +  Y    L+Y 
Sbjct: 108 IAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-DGTGHGDPQAEFFSFEACEYRRHFLAY- 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+ +    F A   +  ++
Sbjct: 166 -------------------------SPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQV 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
              +     Y DDAY +++      A   +   G  +   I  + +    +     +   
Sbjct: 201 ---KKAIFAYGDDAYLRKL-----EADVPIYYYGVTENDDIQARNIERTTSGSAFDV-YH 251

Query: 297 GKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G +F   F  P  G+  + NAL    +     +D   V E +     V  RF        
Sbjct: 252 GDEFVGHFTVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTFPGVKRRFSEKIVADM 311

Query: 355 GGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    ++  +    +      II VF                 ALDLAD  
Sbjct: 312 --TVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKV 369

Query: 414 IVTDD--NPRSE----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
            + D   + R E      E + A+I  G  G + K N +        +L+  D +V+  G
Sbjct: 370 YLCDIFGSAREEQGNVKIEDLGAKIKKG--GEVIKENNVS------PLLDYHDAVVIFMG 421

Query: 467 KGH 469
            G 
Sbjct: 422 AGD 424


>gi|315617649|gb|EFU98255.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 3431]
          Length = 457

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 119/363 (32%), Gaps = 38/363 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVW 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGDVKWSLVGEHNMHNGLMAIAAARHVGVSPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVA 465
           AD   +         P  I    AE+             ++A+    ++     D ++V 
Sbjct: 381 ADEVFLLQ-------PPHIPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|218547545|ref|YP_002381336.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ATCC 35469]
 gi|218355086|emb|CAQ87693.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia
           fergusonii ATCC 35469]
          Length = 438

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLAHYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|306818519|ref|ZP_07452242.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
 gi|304648692|gb|EFM45994.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
          Length = 490

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 144/442 (32%), Gaps = 61/442 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTR--KFLSLFASRLYGK 112
           +P+    G +  V   A  +        S+ IR + P +   +    +      +  +  
Sbjct: 58  LPELRELGVKVFVGHRAAQVTPGMIVVASSAIREDNPEIQRAHQLGLEIWHRSQALDFCT 117

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
             +++LAV G  GK++ ++ + +     G   SF IG    I  +    RL         
Sbjct: 118 RSKDLLAVAGAHGKTTTSAMLSKALWDVGADPSFAIG--GVILEYGTGARLG-------- 167

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   +G   V     S G   +       +    TN+  DH+D+  +++A+  A  
Sbjct: 168 --------RGREFVIEADESDGSFLNY----APLVEVLTNIEPDHLDHWGSREAFDQA-F 214

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   +      +   DDA  + +  R H+    ++S G+         V A+  + ++
Sbjct: 215 VDFTARIRPGGAIVACGDDAGIRRLAPRFHSGAA-LVSYGFGAPLPGAALVVALG-EPRL 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-------------------GIDSALV 332
                  D   +   P +   ++ L  +                         GID    
Sbjct: 273 GAGHAEVDLRVMRCHPEQLLFHDVLRLSQGGKHYLLDAAAALGAAAALNECVGGIDFGAF 332

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG 391
            + L        R +F+G    G RIY DY H    +   L   R +   GR++V F   
Sbjct: 333 CQSLSSFTGTGRRMQFLGEIG-GVRIYDDYGHHPTEVAATLGAARDLAGNGRLLVCFQPH 391

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRI 446
                          L  AD  +V       E+P         A+++     FI   +  
Sbjct: 392 LYSRTKTFASEFATVLSAADEVVVCGVYAARENPTDGADGDAIADLMGEKGQFI--SDMY 449

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
            A      +    D+L+  G G
Sbjct: 450 AAGDAVYNLAKPGDLLLFLGAG 471


>gi|172037152|ref|YP_001803653.1| cyanophycin synthetase [Cyanothece sp. ATCC 51142]
 gi|20138007|sp|Q9KGY4|CPHA_CYAA5 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|9739167|gb|AAF97933.1|AF279247_1 cyanophycin synthetase [Cyanothece sp. ATCC 51142]
 gi|171698606|gb|ACB51587.1| cyanophycin synthetase [Cyanothece sp. ATCC 51142]
          Length = 872

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 125/358 (34%), Gaps = 33/358 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I +++G     +G TST   +  +  +          A   L    V    +E++ 
Sbjct: 505 LTAHIYRQTGKV---VGYTSTDGVYIGEYLVEKGDNTGPFSAGMILKDPTVEVAVLESAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+      T +     K  +  E++  +  A++ AD
Sbjct: 562 GGILRSGLAFDTCDVGIVLNVAADHLGLGDINTIEQMARVKG-VVAEVVHADGYAVLNAD 620

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-----------QQVTISVEG- 297
           D     + ++         S+    + IH                      Q T+ +E  
Sbjct: 621 DPLVAAMAEQVKGKVAY-FSMNPDNEIIHNHTRRDGMAAVYENGYISILEGQFTLRIEEA 679

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNS 353
            +          F + NAL A       G+D   + + +          PGR        
Sbjct: 680 VNVPMTMGGMAPFMIANALAACLAAFCQGVDIEDIRQGVRTFKASANQTPGRMNLFNLGD 739

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +  DYAH     E + + ++     R+ VV G G  RD+    ++GKIA  + D  
Sbjct: 740 YHALV--DYAHNPAGYEAVGEFVKNWKGQRLGVVGGPGDRRDEDLI-LLGKIAARVFDRI 796

Query: 414 IVTDDN-----PRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +V +D+      R E  + I   I+       +    +  EAI   ++ ++K  ++V+
Sbjct: 797 LVKEDDDKRGRARGEAADLIIDGILSENDKADYEAILDETEAIEYGLDKVDKGGLVVI 854


>gi|227875257|ref|ZP_03993399.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
 gi|227844162|gb|EEJ54329.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
          Length = 458

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 144/442 (32%), Gaps = 61/442 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTR--KFLSLFASRLYGK 112
           +P+    G +  V   A  +        S+ IR + P +   +    +      +  +  
Sbjct: 26  LPELRELGVKVFVGHRAAQVTPGMIVVASSAIREDNPEIQRAHQLGLEIWHRSQALDFCT 85

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
             +++LAV G  GK++ ++ + +     G   SF IG    I  +    R        L 
Sbjct: 86  RSKDLLAVAGAHGKTTTSAMLSKALWDVGADPSFAIG--GVILEYGTGAR--------LG 135

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  +++     +  S                  +    TN+  DH+D+  +++A+  A  
Sbjct: 136 RGRAFVIEADESDGSFLNY------------APLVEVLTNIEPDHLDHWGSREAFDQA-F 182

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   +      +   DDA  + +  R H+    ++S G+         V A+  + ++
Sbjct: 183 VDFTARIRPGGAIVACGDDAGIRRLAPRFHSGAA-LVSYGFGAPLPGAALVVALG-EPRL 240

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-------------------GIDSALV 332
                  D   +   P +   ++ L  +                         GID    
Sbjct: 241 GAGHAEVDLRVMRCHPEQLLFHDVLRLSQGGKHYLLDAAAALGAAAALNECVGGIDFGAF 300

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG 391
            + L        R +F+G    G RIY DY H    +   L   R +   GR++V F   
Sbjct: 301 CQSLSSFTGTGRRMQFLGEIG-GVRIYDDYGHHPTEVAATLGAARDLAGNGRLLVCFQPH 359

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRI 446
                          L  AD  +V       E+P         A+++     FI   +  
Sbjct: 360 LYSRTKTFASEFATVLSAADEVVVCGVYAARENPTDGADGDAIADLMGEKGQFI--SDMY 417

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
            A      +    D+L+  G G
Sbjct: 418 AAGDAVYNLAKPGDLLLFLGAG 439


>gi|227326193|ref|ZP_03830217.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 461

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 122/365 (33%), Gaps = 42/365 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTS--TISSFAQDNRLTTPSPIYL 170
             ++AV GT GK++ A  V  I +  G     +  G     T+S+   D+          
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADEY 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A     S+ V +                          NL  DH D     +A     
Sbjct: 163 DCAFFDKRSKFVHYC------------------PRTLVLNNLEFDHADIFDDLKAIQKQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L   L+P     I+  +D   K+VM            VG +G +   +KV    ++ Q
Sbjct: 205 HHLV-RLVPGSGKIILPTNDLNLKQVMGM--GCWSEQELVGEEGTW-RAQKVSTDASQYQ 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V ++ +    +  + L GE  ++N L+A      +G+  A     L        R E  G
Sbjct: 261 VYLN-KELVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELRG 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--L 407
           T   G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L
Sbjct: 320 TE-HGVTVYDDFAHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSL 378

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLV 463
             AD   +         P  I  +++      ++  +    I T +E         D ++
Sbjct: 379 GRADEVFLFQ-------PAHIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHIL 431

Query: 464 VAGKG 468
           V   G
Sbjct: 432 VMSNG 436


>gi|254476425|ref|ZP_05089811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
 gi|214030668|gb|EEB71503.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
          Length = 468

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 83/418 (19%), Positives = 148/418 (35%), Gaps = 55/418 (13%)

Query: 64  IAQGA----EAIVVSSAYSL------QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +  GA     A+VVS               A + +  P  V ++   F    A+R + ++
Sbjct: 59  LKSGAFDDVAALVVSPGIPHLYPKPNPVIRAALVAGVP--VDNDIGLFFRSVATRGWEQY 116

Query: 114 PE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            +   I+AVTG++GKS+  + +  I Q +G  S   G    I     D            
Sbjct: 117 DQAPRIVAVTGSNGKSTTVALLHHILQEAGRESQLAG---NIGRGVLDIDPPGSGG---- 169

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                        V +E SS+  D  R   +      FTNL  DH+D H     YF AK 
Sbjct: 170 ------------VVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHAGMGGYFAAKR 215

Query: 232 RLFEELLPKESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHN 287
           RLF E  P  +   +  D+    + ++ + A +     +S   +  G    +       +
Sbjct: 216 RLFAEGGPDRAIIGVDEDEGLYLAGQLSEAASDDRVIRISASQKLTGPGWQVFARKGFLS 275

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +        D   +  LPG     NA  A     A+G+   L+ + L     +P R +
Sbjct: 276 EYRKGRQAASIDLRQMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRSQ 335

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            + T++    +    A   +S    L     I     I     G +++ G   + G+ A 
Sbjct: 336 TIATHAGVRYVNDSKATNLDSAAKALGAFENIR---WIC---GGLEKEGGLDALRGQ-AG 388

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +    ++  +         + AE+   +          +A+  A       D +++A
Sbjct: 389 KVRKAYVIGREAAGFAMQLDVEAEVCITM---------AQAVARASAEAEPGDTVLLA 437


>gi|291334161|gb|ADD93830.1| UDP N acetylmuramate [uncultured marine bacterium
           MedDCM-OCT-S05-C75]
          Length = 471

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 103/311 (33%), Gaps = 29/311 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ AS +  I +++GL+   +     I     +   +           
Sbjct: 106 RWVLAVAGTHGKTTTASMLAWILEQAGLNPGYL-----IGGAPNNFEQS----------- 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       V  +         R   +  +       NL  DH D      A   A+  
Sbjct: 150 ARLGDGPFFVVEADEYDTSYFDRRSKFVHYRPRTLIVNNLEYDHADIFPDIDAI-QAQFH 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLS------VGYQGKFIHLKKVCAI 285
           L    +P+    ++ +DD    EV+ +       RV S      V +    +      A 
Sbjct: 209 LLLRTVPQGGLVVVPSDDEAVNEVLHQGCWTPIARVGSKAPRKPVDHDNGDLWSATQGAA 268

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              +   +  +       + L G     NAL A       G+ + + ++ L +   V  R
Sbjct: 269 GPGKFEVLLNDVSQGLIEWSLKGAHNRSNALNAIAAARHAGVPTDVSIDALNRFSGVKRR 328

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E +  ++    IY D+AH   ++   L+ +R   S   I+              +   +
Sbjct: 329 MEVIFEDAH-TVIYDDFAHHPTAIRATLQGLRDNASSDEIIAIIEPRTHTMSLGTLQADL 387

Query: 406 --ALDLADIAI 414
                 AD  I
Sbjct: 388 STCCAAADRVI 398


>gi|239637938|ref|ZP_04678899.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus warneri
           L37603]
 gi|239596501|gb|EEQ79037.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus warneri
           L37603]
          Length = 437

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 122/360 (33%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG   T       +     +  Y    LSY 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIG-DGTGMGLPGSDYFAFEACEYRRHFLSY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY +     F+A    F+E+
Sbjct: 162 -------------------------DPDYAIMTNIDFDHPDYFKDVDDVFDA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
                 AII + DD + +++      A   +   G+ +   ++ K +       Q  + +
Sbjct: 193 AHNVKKAIIAWGDDEHLRKL-----EADVPIYYYGFNETDDVYAKNIQITEQGSQFDVYI 247

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+ +  FL P  G+  + N L    +     ++   + E LE    V  RF     +++
Sbjct: 248 NGEFYGQFLSPQYGDHNILNTLAVVTISYLEKMNVDNIKEALETFGGVKRRFNETKVSNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R       +I VF                 +L  AD  
Sbjct: 308 --VLVDDYAHHPREINATIETARKKYPQKEVIAVFQPHTFSRTQAFLEEFATSLSAADHV 365

Query: 414 IVTDDNP--RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK--QDVLVVAGKGH 469
            + +     R    E    ++I+ I G            + I++L K    V++  G G 
Sbjct: 366 FLCEIFGSIRENTGELTIQDLINRIDGSALID------ESGIDVLEKFENAVILFMGAGD 419


>gi|315304090|ref|ZP_07874491.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria ivanovii
           FSL F6-596]
 gi|313627531|gb|EFR96263.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria ivanovii
           FSL F6-596]
          Length = 461

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 24/284 (8%)

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             H+S+E SS  L    ++  +      TN+   H+DYH  +  Y  AK  + +    ++
Sbjct: 168 EQHISMELSSFQLM--GVNTFRPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ED 224

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I  D    K + K+         +    G+  +++          +    E     
Sbjct: 225 DFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFDDEVIGAR 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D
Sbjct: 278 DRILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYND 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+  +      ++   +   +++   G DR      ++       A I         
Sbjct: 337 SKATN--ILATQXALKGFKNP--VILLAGGLDRGNSFDELLPFFKNVKALIVF------- 385

Query: 422 SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E  +KI R   I GI  +    N   A+  A +     D++++
Sbjct: 386 GETADKIGRVGKIAGIEVYY-VDNVEAAVPVAYKESAPGDIILL 428


>gi|317177431|dbj|BAJ55220.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F16]
          Length = 493

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 141/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  Q     I+      T +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +F   + G+F  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 GSVWENFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVWELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKVQLENILQATTI--QGDLILFA 486


>gi|298241643|ref|ZP_06965450.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554697|gb|EFH88561.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 644

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 111/337 (32%), Gaps = 36/337 (10%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + +I +  G +   IG               TP  + + +  S+       H      
Sbjct: 308 SLIYEILRAHGQAPVVIGGNVAGVETLSLLPQITPETLVVLELSSWQLEGLAPH------ 361

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      I  +    TN+  DH++ +   + Y  AK  +F     +   A+   D+
Sbjct: 362 ----------SISPLVAVMTNIYPDHLNTYNGMEDYAEAKANIF-RFQTEHGIAVFNYDN 410

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +++     A        SV + G F     V     + +     E        PL G  
Sbjct: 411 PWTRHFGLEAPGETWFT-SVEHGGSFPRSALVDGTPTQVEPLAFAE-------TPLKGRH 462

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT-SNSL 369
            + N L+A      +G+  +++ E + +   V  R E V     G RI  D   T   + 
Sbjct: 463 NLENILLATTTARLLGVSESVIAETVRRFKGVSHRLEEVCVW-HGVRIVNDSTSTSPIAG 521

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           ++ L+           +V   GG+          +  +      I+   +   E    +R
Sbjct: 522 QVALEAFEQ------PIVLVAGGNTKHLPLEQWPETIIKRCRDVILLPGSGTDELLPALR 575

Query: 430 AEII-HGIPGFIE--KGNRIEAIRTAIEMLNKQDVLV 463
            EI   G+   +     +  +AI  A+ +    DVL+
Sbjct: 576 QEIERQGVIDPVRGTFADFHQAIDAALALTRPGDVLL 612


>gi|261377827|ref|ZP_05982400.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria cinerea ATCC 14685]
 gi|269146129|gb|EEZ72547.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria cinerea ATCC 14685]
          Length = 458

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 117/360 (32%), Gaps = 22/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L V GT GK++ AS +  + + +GL+   +     I    ++  ++   P    +
Sbjct: 103 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSVSARLPQTPRQ 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +  S   V       ++    + +    +       NL  DH D      A    +  
Sbjct: 158 DPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAI-QTQFH 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   +        ++ + +       V   G +    H  +V   +      
Sbjct: 217 HLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTE----HGWQVGEANADGSFG 270

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++GK      + L G     NAL         GID     E L     V  R E  GT
Sbjct: 271 VLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGIDIQTACEALSAFKNVKRRMEIKGT 330

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
              G  +Y D+AH   ++E  ++ +R       I+              +   +  +L  
Sbjct: 331 -VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTMKAALPESLKD 389

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           AD            D     AE +  + G +      +A +   ++     D ++V   G
Sbjct: 390 ADQVFC---YAGGVDWN--VAEALAPLGGKLHVSKDFDAFVAEIVKHTEAGDHILVMSNG 444


>gi|228470194|ref|ZP_04055101.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas uenonis 60-3]
 gi|228308145|gb|EEK17008.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas uenonis 60-3]
          Length = 457

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 106/358 (29%), Gaps = 45/358 (12%)

Query: 82  FSATIRSNTPIL--------VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++  I  + P L         V    + L + A           LAV G+ GK++  + +
Sbjct: 72  YTPAIPHDHPELCYLRSHHFRVLKRAEALGVIAESY------RTLAVAGSHGKTTTTNML 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I   +     ++G T+ I   A D                        H ++      
Sbjct: 126 AHILDGA----KEVGCTAFIGGLAVDTGSNFIYS---------------DHSNLLVVEAD 166

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   +       T+   DH+D +     Y  A    F   +      ++       
Sbjct: 167 EYDRSFLHLNPYMAVVTSTDADHLDIYGDYAGYL-AGFEEFCSQIQPGGTLLMKEGLPIK 225

Query: 254 KEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLFPLPGE 309
             + +     G R L+ G      ++   V       +                  +P  
Sbjct: 226 PHLAE-----GVRTLTYGSASTADVYYDHVTVGDGTIRFDWHYPEAGIHLEQVALGVPVR 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA  A  +    G+  A ++  +E       RFE V    R   +  DYAH    L
Sbjct: 281 TNLENATAAMTIAYLNGVAPANIVRGVESFRGTKRRFELVLQTDRH-LLIDDYAHHPVEL 339

Query: 370 EMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +  +++I+ I     ++ +F                 +L   D  IV D  P  E+P 
Sbjct: 340 DSSIRSIKEIYGSEDVLAIFQPHLYSRTADFYQDFAKSLSHVDQVIVLDIYPAREEPM 397


>gi|253991523|ref|YP_003042879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638401|emb|CAR67023.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelat
           ligase (ec 6.3.2.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782973|emb|CAQ86138.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photorhabdus asymbiotica]
          Length = 463

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 118/370 (31%), Gaps = 39/370 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +    + +     SP ++ +
Sbjct: 108 PERWVLAVAGTHGKTTTAGMLAWILEACGYKPGFL--IGGVPGNFETSAQIGESPFFVIE 165

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+           S                   NL  DH D      A       
Sbjct: 166 ADEYDSAFFDKRSKFVHYS------------PRTLIMNNLEFDHGDIFGDLAAIQRQFHH 213

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P         +D   K+V+         +  VG  G +   KK+    +  +V 
Sbjct: 214 LV-RIVPGSGKIFAPDNDINLKQVLSM--GCWSELEQVGETGSWQ-AKKISTDSSDYRV- 268

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  + L GE  + N L+A      +G+        L        R E  G  
Sbjct: 269 FYCGEVVGEVNWSLVGEHNMRNGLIAIAAAHHVGVQPTDACRALSDFINARRRLELRGQE 328

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDL 409
             G  +Y D+AH   ++   L+ +R+   G  RII V          G        AL  
Sbjct: 329 -NGVTVYDDFAHHPTAILATLEALRSKVGGTARIITVLEPRSNTMKMGISKNEIAPALGR 387

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I+   +EI  H +       +    +   ++   + D ++V 
Sbjct: 388 ADEVFLFQ-------PANIKWHVSEIADHCVQPAYWSADIDSLVNMIVDKAQQGDHILVM 440

Query: 466 GKG-----HE 470
             G     HE
Sbjct: 441 SNGGFGDIHE 450


>gi|301155884|emb|CBW15353.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           parainfluenzae T3T1]
          Length = 437

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 132/397 (33%), Gaps = 59/397 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++        +  + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 70  IVISPGLAVKTPEIQTALSAGVEVIGDIELF--------CRAATKPIIGITGSNGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 122 TLVYEMAKAAGIKVGMGGNIG-------------------IPALSLLNED-CDLYVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++         A++  +D
Sbjct: 162 SFQLE--TTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIY----HNAETAVVNLED 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLP 307
              K       N   +V+S         LK       +  K++V +  +         L 
Sbjct: 216 ---KLTFGEGENQAKKVVSFAENQADYWLKTENGKQYLMAKEEVILPCD------EATLV 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+GI+   +   L +   +  RF+     +  G  +++ +  +N
Sbjct: 267 GRHNYMNILAATALAQAVGINLEAIRTALRQFKGLDHRFQLAHQAN--GVRWINDSKATN 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
               +         G + ++   G  +      +   I            D         
Sbjct: 325 VGSTVAALAGLYVEGTLHLLL-GGDGKGADFSELADLINQPHISTYCFGRDG-------- 375

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++              +AI      L   D++++
Sbjct: 376 --KQLAALSSQSHLFETMEQAISFLRPHLKSGDMVLL 410


>gi|289668052|ref|ZP_06489127.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 452

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 146/412 (35%), Gaps = 28/412 (6%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 49  ALAQGYAPSNISPDAIDVVVGNALSRGNPAVEAVLDAGRRYTSGAQWLAEQVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A+D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGCEFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G+        ++ A        +    + 
Sbjct: 214 ARGRLIVNGEDAHLAEVL--AMGCWTPVERFGFDASLDWSARLIAADGSAFAVLHRGVEI 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A+V+  L +   V  R E +G N+ G  +Y
Sbjct: 272 GQVQWPLVGRHNVLNGLAALAAVHAVGVDPAMVMPALARFQSVKRRLEVIG-NAHGVTVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       +VV                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRAKVGAARVVVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              R E      A II  + G     + ++A+   + E+    D +V    G
Sbjct: 390 --HRPELAWD-AAPIIAQVRGDAHVAHDVDALLQTLGEIAQPGDHVVFMSNG 438


>gi|227551623|ref|ZP_03981672.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium
           TX1330]
 gi|257895775|ref|ZP_05675428.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12]
 gi|293377610|ref|ZP_06623799.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1]
 gi|227179186|gb|EEI60158.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium
           TX1330]
 gi|257832340|gb|EEV58761.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12]
 gi|292643610|gb|EFF61731.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1]
          Length = 444

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 121/363 (33%), Gaps = 57/363 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG+ GK+S    +  +      +S+ IG   T     Q    +  +  Y    L+Y 
Sbjct: 108 IAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-DGTGHGDPQAEFFSFEACEYRRHFLAY- 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+ +    F A   +  ++
Sbjct: 166 -------------------------SPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQV 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
              +     Y DDAY +++      A   +   G  +   I  + +    +     +   
Sbjct: 201 ---KKAIFAYGDDAYLRKL-----EADVPIYYYGVTENDDIQARNIERTTSGSAFDV-YH 251

Query: 297 GKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G +F   F  P  G+  + NAL    +     +D   V E +     V  RF        
Sbjct: 252 GDEFVGHFTVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTFPGVKRRFSEKIVADM 311

Query: 355 GGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    ++  +    +      II VF                 ALDLAD  
Sbjct: 312 --TVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKV 369

Query: 414 IVTDD--NPRSE----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
            + D   + R E      E + A+I  G  G + K N +        +L+  D +V+  G
Sbjct: 370 YLCDIFGSAREEQGNVKIEDLGAKIKKG--GEVIKENNVS------PLLDYHDAVVIFMG 421

Query: 467 KGH 469
            G 
Sbjct: 422 AGD 424


>gi|126657548|ref|ZP_01728704.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110]
 gi|126621252|gb|EAZ91965.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110]
          Length = 872

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 124/357 (34%), Gaps = 31/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I +++G     +G TST   +  +  +          A   L    V    +E++ 
Sbjct: 505 LTAHIYRQTGKV---VGYTSTDGVYIGEYLVEKGDNTGPYSAAMILKDPTVEVAVLESAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+      T +     K  +  E++  +  A++ AD
Sbjct: 562 GGILRSGLAFDNCDVGIVLNVAADHLGLGDINTIEQMARVKG-VVAEVVHADGYAVLNAD 620

Query: 250 DAYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTISVEG-K 298
           D     + ++                        G     +       + Q T+ +E   
Sbjct: 621 DPLVTAMAEQVKGKVAYFSMNPDNEVIQNHTRRDGMAAVYENGYISILEGQFTLRIEEAV 680

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
           +          F + NAL A       G+D   + + +          PGR         
Sbjct: 681 NVPMTMNGMAPFMIANALAACLAAFCQGVDIEDIRQGVRTFKASANQTPGRMNLFNLGDY 740

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH     E + + ++     R+ VV G G  RD+    ++GKIA  + D  +
Sbjct: 741 HALV--DYAHNPAGYEAVGEFVKNWKGQRLGVVGGPGDRRDEDLV-LLGKIAAGVFDRIL 797

Query: 415 V-TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V  DD+ R  D  +    II GI        +    +  EAI   ++ ++K  ++V+
Sbjct: 798 VKEDDDKRGRDRGEAADLIIDGILSENDQADYQAILDETEAIEYGLDKVDKGGLVVI 854


>gi|257867498|ref|ZP_05647151.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC30]
 gi|257873827|ref|ZP_05653480.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC10]
 gi|257801554|gb|EEV30484.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC30]
 gi|257807991|gb|EEV36813.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC10]
          Length = 455

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 106/279 (37%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +D ++      TN+   HIDYH ++  Y  AK RL ++ +  +   +I
Sbjct: 171 MELSSFQLM--GIDTLRPKIAVITNIYEAHIDYHGSRPEYVLAKWRL-QQRMTADDYLVI 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +    + +  ++        +         L  +  ++ K++V ++ +         +
Sbjct: 228 NWNQPELEALSAKSKAQIIPFSTKEKVAGAYMLDGI--LYYKEEVIMAAD------ELGV 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + NAL A  +     + +  + + L+    VP R ++V T ++        A   
Sbjct: 280 PGDHNIENALAAIAVGKLCDMPNEAIKQALQTFTGVPHRTQYVITINQVKFFNDSKATNI 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L           +++   G DR      ++  +    A +          E  E
Sbjct: 340 LATEMALGGF----DNEKLILLAGGLDRGNSFDDLVPALKGLKAIVLF-------GETKE 388

Query: 427 KIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           K+ A         IE  + +E A+  A  +    D +++
Sbjct: 389 KLAAAAQAAGVKTIEMTDNVETAVPLAFSLSAAGDTILL 427


>gi|149277289|ref|ZP_01883431.1| cyanophycin synthetase [Pedobacter sp. BAL39]
 gi|149232166|gb|EDM37543.1| cyanophycin synthetase [Pedobacter sp. BAL39]
          Length = 871

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 113/351 (32%), Gaps = 28/351 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + +G     +G T++   + Q+  L          A   L    V    +E + 
Sbjct: 499 LISHIVKSNGTR---VGFTTSDGIYVQNTLLMKGDTTGPVSAEFILRDPTVEFAVLETAR 555

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   K   G  TN+  DH+      T       K  +    + +   A++ AD
Sbjct: 556 GGILRAGLGFNKCDIGVVTNIQEDHLGISDIHTLSDLARVKAVVIRA-VKRSGWAVLNAD 614

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDF--- 302
           + +   +   A +      S+        +      + A++    +TI            
Sbjct: 615 NQHCVRIAADA-DCNVSYFSMDESNPVIVEHCKKGGIAAVYENGYITIKKGDWKIRVEKV 673

Query: 303 -----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRG 355
                 F    +F + N L A       G     +   LE       +          + 
Sbjct: 674 THIPLTFGGSVDFMIQNVLAATLATFLWGYKIEDIRMSLETFIPSAAQTPGRMNTFRFKE 733

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I VD+AH     + I   +++I +   I V    GDR         + A ++ D  I+
Sbjct: 734 FKILVDFAHNPAGFKGIKTYLKSIDATEHIGVISATGDRRDSDILETARTAAEMFDKIII 793

Query: 416 TDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI------EAIRTAIEMLNKQ 459
             +   R    +++   ++ GI     + + I      EA++  I      
Sbjct: 794 CQEKYLRGRKQQELIDLLLQGIREVKPEMDVIINNNGEEALKYIIATARPG 844


>gi|320157425|ref|YP_004189804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
 gi|319932737|gb|ADV87601.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
          Length = 442

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 128/397 (32%), Gaps = 51/397 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            + VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPQIQTVLARGVAVVGDI-----ELFAWAADKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +    G+     G     +                      L  Q V    +
Sbjct: 121 TVTDLTGVMANACGVKCAIGGNIGVPA--------------------LDLLEQEVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L+A +F NL  DH+D +Q    Y  AK+R+F+         ++ 
Sbjct: 161 ELSSFQLE--TTSSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH----AKHGVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  +             +++ G   K      V +   +  ++ + +         L 
Sbjct: 215 RDDRQTYPETSHGQQLLA-LVTFGSDDKEF---GVMSHQGESWLSYNQQPILASRELKLV 270

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V N LV   L    GID    L  L+    +  R + V  N RG +   D   T+ 
Sbjct: 271 GQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLTHRCQVVADN-RGIKWVNDSKATNL 329

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +      +         ++V G G   D    P+   +A     +     D         
Sbjct: 330 ASTQAALSGLNCAGKLYLLVGGDGKGADFS--PLKPILAQLNLQLCCFGADG-------- 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +             + I      L   D++++
Sbjct: 380 --DQFMPLHASATRFERMEDVIEHISPQLQSGDMVML 414


>gi|157156086|ref|YP_001461258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli E24377A]
 gi|209917281|ref|YP_002291365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SE11]
 gi|218552671|ref|YP_002385584.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI1]
 gi|300816126|ref|ZP_07096349.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300923130|ref|ZP_07139190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|301330131|ref|ZP_07222800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|157078116|gb|ABV17824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E24377A]
 gi|209910540|dbj|BAG75614.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE11]
 gi|218359439|emb|CAQ96977.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI1]
 gi|300420585|gb|EFK03896.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|300531333|gb|EFK52395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300843878|gb|EFK71638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|320200393|gb|EFW74979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EC4100B]
 gi|324017751|gb|EGB86970.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 117-3]
          Length = 438

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFAGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|325204179|gb|ADY99632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           M01-240355]
          Length = 458

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 119/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK+++AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTIASMLAWVLEYAGLAPGFL-----IGGVPENFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL         G+D     E L     
Sbjct: 265 A----DGSFDVLLDGKKAGHVAWSLMGGHNRMNALAVIAAARHAGVDIQTACEALSTFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 321 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 379

Query: 402 MGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
              +  +L  AD            D     AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPESLKEADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNART 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|302386831|ref|YP_003822653.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           saccharolyticum WM1]
 gi|302197459|gb|ADL05030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           saccharolyticum WM1]
          Length = 448

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 111/293 (37%), Gaps = 22/293 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L + G +    E SS  L+   +   +    +  N+  DH+D H+T + Y   K R+ 
Sbjct: 148 EALKTGGDSVTVAEISSFQLE--TITDFRPDVSAILNITPDHLDRHKTMECYIEVKERIT 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVT 292
               P++S  I+  DD   +E             S     +G  +   ++   HN ++  
Sbjct: 206 SNQRPQDS-CILNFDDPVLREFGAALTPKAVYFSSRQFLEEGYCMEGDRIIWNHNGEKTE 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I+           L G     N + AA +   +G+   ++ + + +   V  R EFV   
Sbjct: 265 IA-----NIHEIQLLGRHNHENIMAAAAISAQMGVPMDVIRKVVREFKAVEHRIEFVAEK 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +  G  Y + +  +N  +  ++ I+ +    +++    G D++      +      +  +
Sbjct: 320 A--GVKYFNDSKGTNP-DAAIQAIKAMPGPTLLI--AGGYDKNSQYDEWIESFDGKVKYM 374

Query: 413 AIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++       +  EKI      HG    +   +  EA++      N+ D +++
Sbjct: 375 VLL------GQTREKIAECAARHGFTNVMYAEDMQEAVKVCASYANRGDHVLL 421


>gi|300905497|ref|ZP_07123261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300919643|ref|ZP_07136134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|301303812|ref|ZP_07209932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|300402647|gb|EFJ86185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300413283|gb|EFJ96593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|300840939|gb|EFK68699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|315253162|gb|EFU33130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 85-1]
          Length = 438

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  E+        +     +A+R     +   D++++
Sbjct: 377 LAALHPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|317969026|ref|ZP_07970416.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CB0205]
          Length = 459

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 99/314 (31%), Gaps = 28/314 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              ++          + +TGT+GK++V   V  + ++ G+ +   G              
Sbjct: 98  GEISTAWEASGSTPWIGITGTNGKTTVTHLVAHLLKQGGIDAPMCGNVG----------- 146

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   L  AL   S       ++              +    G +T L  DH++ H T
Sbjct: 147 --HSAAEL--ALERFSDGQTRPQALVVELSSYQIESAPELAPAIGLWTTLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y   K      LL + +  ++  DD         A     R ++   +   +     
Sbjct: 203 LENYRAIK----RGLLERSAIQVLNGDDP--DLCAHAATWPNARWITASSREAALAKGID 256

Query: 283 CAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             +  +    +   G         +PG     N L+A  + + +G+    +   L     
Sbjct: 257 PWLWIEGNQVMERSGALLPANALAMPGAHNRQNMLMALAVGLELGLSGPAMEAALRAFPG 316

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R E + +      I    A   ++ E+ L+ +         +V   GG+  QG    
Sbjct: 317 VPHRLELIRSLDGVDWINDSKATNYDAAEVALRAVEG------PLVALAGGEAKQGDASA 370

Query: 402 MGKIALDLADIAIV 415
                   A   ++
Sbjct: 371 WIAALQRSAKAVVL 384


>gi|169343170|ref|ZP_02864191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens C str. JGS1495]
 gi|169298722|gb|EDS80798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens C str. JGS1495]
          Length = 458

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 135/400 (33%), Gaps = 58/400 (14%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +  F     G     +  VTG+ GK++  + V ++  + G  ++  G   T         
Sbjct: 108 MEEFVRYCKG----KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTP-------- 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L   +  +  +    V +E SS  L        ++     TN+  +H+D H+
Sbjct: 156 --------LFSNIEEIKEE--DKVVLELSSFQLMTM---DAEIDVAIVTNITPNHLDMHK 202

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             Q Y +AK  +F+    +    +I  ++  +K + K A     R  S   +G+  + K 
Sbjct: 203 DMQEYIDAKKNVFKYQ-RENDLLVINDENEITKNLDKEAKGKVVRFSSKKTEGEDAYYKD 261

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                      + V GK+      +  +    V N L A        +    + +  E  
Sbjct: 262 ---------GKLYVHGKEVCKKDDIIIKGMHNVENYLAAFLAVYDE-VSIESMKKVAETF 311

Query: 340 HVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             V  R EF+     G + Y D  A T       LK          +++   G D+    
Sbjct: 312 GGVHHRCEFI-REVDGVKYYNDSIASTPTRTLAGLKAFEK-----PVILLAGGYDKHVPF 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKG-NRIEAIRTA 452
            P+  +    +  I +           EKI+A     E   GI   +  G +  E +  A
Sbjct: 366 EPLAYEGYEKIKAIVLF------GVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIA 419

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             +    D++        +  +  N E +     +I+  I
Sbjct: 420 KSIAENGDII-TLSPACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|296454434|ref|YP_003661577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296183865|gb|ADH00747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 481

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 121/372 (32%), Gaps = 43/372 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPQHDV 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 157 L-----------CVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSKV 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F      +   +  A DA   E+   A  A  CR +    +        +       +  
Sbjct: 204 FHN---AKRAIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSG 260

Query: 293 ISVEGKDFDFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +               V +AL A  L + +G D    L+ L   
Sbjct: 261 VAGGAVGEPVRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSF 320

Query: 340 HVVPGRFEFVGTNS-RGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V   +  GG + +VD +  +N                I +    G  +   
Sbjct: 321 KPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLSSFPAKSVIWI--AGGLAKGSR 378

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAI 453
              ++   A  +    I+  D  P  E       +I   I    +     +R  A+    
Sbjct: 379 FEDLVKDQAHTIKAAVIIGKDQQPMVEAFASQAPDIPVTIIDPEDNDTVMDR--AVEACG 436

Query: 454 EMLNKQDVLVVA 465
                 D++++A
Sbjct: 437 TYAAAGDIVLMA 448


>gi|148269829|ref|YP_001244289.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga petrophila RKU-1]
 gi|166224745|sp|A5IKJ0|MURC_THEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147735373|gb|ABQ46713.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga petrophila
           RKU-1]
          Length = 457

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 17/221 (7%)

Query: 208 SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             TN   DH++ +  +   Y +A    FE++       + +A+D  +  +          
Sbjct: 174 IITNARGDHLENYGNSLSRYRSA----FEKISRNTDLVVTFAEDELTSHLGD-------- 221

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAI 325
            ++ G +     L+   A   +Q+  +   GK + +    +PG   V NAL    L  ++
Sbjct: 222 -VTFGVKKGTYTLEMRSASRAEQKAVVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL 280

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           G D A VLE LE+   V  RF     +      +  DYAHT + +  +L+  + +     
Sbjct: 281 GYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEK 340

Query: 385 IVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
           IVV        + +R       AL LAD  +VT+     E+
Sbjct: 341 IVVIFQPHRYTRLEREDGNFAKALQLADEVVVTEVYDAFEE 381


>gi|302380550|ref|ZP_07269015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311493|gb|EFK93509.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
          Length = 441

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 137/388 (35%), Gaps = 45/388 (11%)

Query: 83  SATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           S  IR + P+++  N            A R++G     I+A+TGT+GK++  S + ++  
Sbjct: 64  SPGIRMDNPVILKANELNIEVVSDLELAQRIFGDI--KIVAITGTNGKTTTTSLMTKMLN 121

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            SG  +  IG          +   +     ++                +E SS  L+   
Sbjct: 122 DSGRKAISIGNIGV--GMLWEIYNSDKDTYFV----------------IECSSFQLES-- 161

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K       N+  DHID+H + Q Y NAK  + +    +    ++ ADD Y +E  K
Sbjct: 162 TKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLKNQ-DENCYTVLNADDEYYEECKK 220

Query: 259 RAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                   + +     +G FI    +    +     I ++         L G     N L
Sbjct: 221 FTKANVYDISTSKNVKRGSFIKDNSIYFSDSDCDKIIDLKN------VNLIGYHNYQNVL 274

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               L   IGI+   + E L     V  R EFV      G  Y + +  +N ++  +K I
Sbjct: 275 FCVTLAKLIGINDDSIRETLMSFSGVEHRLEFV--RDLSGVKYYNDSKGTN-VDASVKAI 331

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            +      +++   G D+                 + ++       E   K      +G 
Sbjct: 332 ESFDKN--VIILAGGYDKKVSLDNFFIAGKDKFKALILMGQTRDLFEQKAK-----EYGF 384

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +  +A+  A ++    DV+++
Sbjct: 385 MNIYLVDDMKQAVTQANKIAESGDVVLL 412


>gi|37678796|ref|NP_933405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus YJ016]
 gi|60390522|sp|Q7MNV3|MURD_VIBVY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|37197537|dbj|BAC93376.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           YJ016]
          Length = 442

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 129/397 (32%), Gaps = 51/397 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            + VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPQIQTVLARGVAVVGDI-----ELFAWAADKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +    G+     G     +                      L  Q V    +
Sbjct: 121 TVTDLTGVMANACGVKCAIGGNIGVPA--------------------LDLLEQEVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L+A +F NL  DH+D +Q    Y  AK+R+F+         ++ 
Sbjct: 161 ELSSFQLE--TTTSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH----AKHGVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  +         +   +++ G   K      V +   +  ++ + +         L 
Sbjct: 215 RDDRQTYPETSHGQQSLA-LVTFGSDDKEF---GVMSHQGESWLSYNQQPILASRELKLV 270

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V N LV   L    GID    L  L+    +  R + V  N RG +   D   T+ 
Sbjct: 271 GQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLTHRCQVVADN-RGIKWVNDSKATNL 329

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +      +         ++V G G   D    P+   +A     +     D         
Sbjct: 330 ASTQAALSGLNCAGKLYLLVGGDGKGADFS--PLKPILAQLNLQLCCFGADG-------- 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +             + I      L   D++++
Sbjct: 380 --DQFMPLHASATRFERMEDVIEHISPQLQSGDMVML 414


>gi|170079000|ref|YP_001735638.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
 gi|169886669|gb|ACB00383.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
          Length = 897

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 126/361 (34%), Gaps = 39/361 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I +++G     +G TST   +  D             A   L    V    +E++ 
Sbjct: 505 LTAHIYRQTGKV---VGYTSTDGVYIGDYLAQKGDNTGPQSAAMILQDPTVEVAVLESAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L   +   G   N+  DH+      T +     K  + E + P +  A++ AD
Sbjct: 562 GGILRAGLAFDRCDVGVVLNVAADHLGLGDINTIEQMAQVKGVIAETVSP-DGYAVLNAD 620

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEG------ 297
           D     V   A     +V     Q              + A+++   +T+ +EG      
Sbjct: 621 DPL---VAAMAEKVRGKVTYFSMQPDNPLVLEHIRRGGLAAVYDNGYLTL-LEGEWKLQV 676

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVG 350
              K           F + NAL A     A G+D   + + L          PGR     
Sbjct: 677 EHVKHAPVTMGGMAPFMIANALAACLAAFAQGVDIEHIRQGLRTFKPSAAQTPGRMNLFD 736

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +    +  DYAH     E +   ++    G  I V G  GDR      ++G+IA  + 
Sbjct: 737 LGTHHALV--DYAHNPAGYEAVGAFVKNW-PGERIGVVGGPGDRRDEDLILLGRIAAAVF 793

Query: 411 DIAIV-TDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  IV  DD+ R     ++   I  GI        +    +   A+  A++   ++ ++V
Sbjct: 794 DRIIVKEDDDKRGRHAGEVADLIRQGIQEENPNCQYETILDEQRALNVALDEAPQEALVV 853

Query: 464 V 464
           +
Sbjct: 854 I 854


>gi|163790538|ref|ZP_02184967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
 gi|159874141|gb|EDP68216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
          Length = 461

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 107/283 (37%), Gaps = 22/283 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +E SS  L    +  +K      TN+   H+DYH T++ Y  AKM + +    +E 
Sbjct: 164 DEIIMELSSFQLM--GITELKPHIAVITNIYSAHLDYHGTREEYVAAKMTITKNQT-EED 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+  D    + + +++                ++L+     +  + V           
Sbjct: 221 YLILNWDQPELRALSEKSKATIIPFSRKEILDNGVYLQDDVIYYQGEPVMAK-------E 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG+  V NA+ A  +   +  ++  +   LEK   V  R +FV T     R Y D 
Sbjct: 274 TILVPGDHNVENAMAAIAVAKLLNQENGAIRATLEKFTGVKHRTQFV-TEFEERRFYNDS 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             T+      L     +    + V+    G DR      ++  ++  +  + +  +   +
Sbjct: 333 KATNT-----LATENALKGFDVPVILLAGGLDRGNDFDDLIPAMSGKVKALIVFGETATK 387

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  +       GIP  I+  N   A+  A E+   +DV+++
Sbjct: 388 LAETGE-----KAGIPTIIDVQNVEAAVPVAYELSEAKDVILL 425


>gi|291567673|dbj|BAI89945.1| cyanophycin synthetase [Arthrospira platensis NIES-39]
          Length = 895

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 116/362 (32%), Gaps = 34/362 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D             A   L    V    +E + 
Sbjct: 505 LLAHIMKQTGKV---VGYTTTDGTYIGDYMAEPGDNTGPQSAHLILCDPTVEVAVLECAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           AK++ +  E +     AI+ ADD
Sbjct: 562 GGILRSGLGFDTCDIGVVLNVAADHLGLGDIDTIEQMAKVKSVVAEAVSDRGYAILNADD 621

Query: 251 AYSKEVMKRAHNAGCR----------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KD 299
                +  R                 V      G     +       K   T+ +E   +
Sbjct: 622 PLVAAMSARVKAQVAYFSMNPDNEIIVRHTEAGGLAAVYENGYLSILKGDWTLRIEQAVN 681

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRG 355
                     F + NAL A     A G+    +   L          PGR       S  
Sbjct: 682 VPLTMGGMAPFMIANALAACVAAFAQGVKIEHIRTALATFIASADQTPGRMNLFNMGS-- 739

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +DYAH   S E +   +     G  I V G  GDR       +GK++  + D  IV
Sbjct: 740 YHALIDYAHNPASYEALSGFVNNW-PGPRIGVVGGPGDRRDEDFVTLGKLSAKMFDRIIV 798

Query: 416 -TDDNPRSEDPEKIRAEIIHGIP-----------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
             DD+ R   P      I  GI             +    N  +AI  A+E   K+ ++V
Sbjct: 799 KEDDDTRGRPPGDAAVLITQGIEEVLSPVRDPRVKYETVLNETDAINMALEQAPKESLVV 858

Query: 464 VA 465
           + 
Sbjct: 859 IL 860


>gi|29653489|ref|NP_819181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161830535|ref|YP_001596099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii RSA 331]
 gi|212213341|ref|YP_002304277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuG_Q212]
 gi|62900583|sp|Q83F20|MURD_COXBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082877|sp|A9NA40|MURD_COXBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711904|sp|B6J2Q5|MURD_COXB2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29540751|gb|AAO89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161762402|gb|ABX78044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 331]
 gi|212011751|gb|ACJ19132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuG_Q212]
          Length = 442

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 130/363 (35%), Gaps = 54/363 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 + I+A+TG++GK++V + V  + + +G +    G               TP P 
Sbjct: 100 FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIG-----EPVLEQITPEP- 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                          +  +E SS  L+      ++  A +  N+  DH++ + T Q Y  
Sbjct: 154 --------------DYYVLELSSFQLE--TTFSLRSQAATILNISEDHMNRYATLQDYLR 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R++ +        I+ AD+      +          LS G               + 
Sbjct: 198 AKQRIYTDCF----IPIVNADEPEIWRHLPFNKKP----LSFGLNNAA----DFSLAEHN 245

Query: 289 QQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           Q+ +I+ +GK         L     + NAL A  L  A  I    +L  L     +  R 
Sbjct: 246 QKTSIAYQGKILMPIQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFSGIRHRC 305

Query: 347 EFVGTNSRGGRIYVDYAH-----TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           ++V          +DY +        +    ++++     G++I++   G  +     P+
Sbjct: 306 QWVRKYKE-----IDYYNDSKGTNVGATRAAIESLGQAAKGQLILI-AGGQGKGADFSPL 359

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +   +  + ++ +D P  E   K    I H         +  EA++ + +     D+
Sbjct: 360 KDVVKRYVKQVILIGEDAPLLEKTLKEITVIKHA-------DSMNEAVKRSTQAAKAGDI 412

Query: 462 LVV 464
           +++
Sbjct: 413 VLL 415


>gi|269978146|ref|ZP_06185096.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307701109|ref|ZP_07638134.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
 gi|269933655|gb|EEZ90239.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307614104|gb|EFN93348.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
          Length = 490

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 144/442 (32%), Gaps = 61/442 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTPILVVDNTR--KFLSLFASRLYGK 112
           +P+    G +  V   A  +        S+ IR + P +   +    +      +  +  
Sbjct: 58  LPELRELGVKVFVGHRAAQVTPGMIVVASSAIREDNPEIQRAHQLGLEIWHRSQALDFCT 117

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
             +++LAV G  GK++ ++ + +     G   SF IG    I  +    R        L 
Sbjct: 118 RSKDLLAVAGAHGKTTTSAMLSKALWDVGADPSFAIG--GVILEYGTGAR--------LG 167

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  +++     +  S                  +    TN+  DH+D+  +++A+  A  
Sbjct: 168 RGRAFVIEADESDGSFLNY------------APLVEVLTNIEPDHLDHWGSREAFDQA-F 214

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   +      +   DDA  + +  R H+    ++S G+         V A+  + ++
Sbjct: 215 VDFTARIRPGGAIVACGDDAGIRRLAPRFHSGAA-LVSYGFGAPLPGAALVVALG-EPRL 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-------------------GIDSALV 332
                  D   +   P +   ++ L  +                         GID    
Sbjct: 273 GAGHAEVDLRVMRCHPEQLLFHDVLRLSQGGKHYLLDAAAALGAAAALNECVGGIDFGAF 332

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG 391
            + L        R +F+G    G RIY DY H    +   L   R +   GR++V F   
Sbjct: 333 CQSLSSFTGTGRRMQFLGEIG-GVRIYDDYGHHPTEVAATLGAARDLAGNGRLLVCFQPH 391

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRI 446
                          L  AD  +V       E+P         A+++     FI   +  
Sbjct: 392 LYSRTKTFASEFATVLSAADEVVVCGVYAARENPTDGADGDAIADLMGEKGQFI--SDMY 449

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
            A      +    D+L+  G G
Sbjct: 450 AAGDAVYNLAKPGDLLLFLGAG 471


>gi|85708883|ref|ZP_01039949.1| hypothetical protein NAP1_06570 [Erythrobacter sp. NAP1]
 gi|85690417|gb|EAQ30420.1| hypothetical protein NAP1_06570 [Erythrobacter sp. NAP1]
          Length = 474

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 132/367 (35%), Gaps = 40/367 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E+ +AV GTSGKS+V   +  I   +G          T+ + A        S  +   A 
Sbjct: 117 EHSVAVGGTSGKSTVTGMIAWIMAEAGRDP-------TVMNGAVMKNFADGSNPF---AS 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + + S       V+ S   +  +R        G   N+  DH    ++ +        LF
Sbjct: 167 ARMGSGRSFVSEVDESDGSIALYR-----PSVGVLLNVSLDH----KSIEELRQ----LF 213

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +     A+I  D+  ++ + +R  N      +V  Q   I ++      +   +  +
Sbjct: 214 GDYVAISDRAVINFDNEEARFLAERVKN--VVSFAVHDQSADITVEPESIEQDALGIRAA 271

Query: 295 VEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V        F  + P+PG   + NAL A     A GI+    +  L+    +  RF+ VG
Sbjct: 272 VIDNRTREVFPLILPMPGMHNLSNALAAIAAASASGIEVRSAVYVLKDFAGLARRFDVVG 331

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----------RDQGKRP 400
           T++ G  +  D+ H        L+ ++  T GR+I  F   G            +   + 
Sbjct: 332 TSASGITVIDDFGHNPEKCAATLRTLKA-TEGRVIAFFQPHGYGPLKQMGHELAETFAKE 390

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +       + D         RSE  E+I A I            R       IE+ +  D
Sbjct: 391 LGADDITIMCDPVYFGGTVDRSEGTERIIAMIEEHGGTAEHIPEREACGDRIIEIASPGD 450

Query: 461 VLVVAGK 467
            +V+ G 
Sbjct: 451 RIVIMGA 457


>gi|109899822|ref|YP_663077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
 gi|109702103|gb|ABG42023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
          Length = 441

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 141/399 (35%), Gaps = 58/399 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS   SL+  +     +  + V+ +   F       ++   P  +LAVTG++GKS
Sbjct: 64  ADMLVVSPGLSLKTPAINAAIDAGVQVIGDIELF------AMFNNTP--VLAVTGSNGKS 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +VA+   ++C  +G  +   G     +                      L  +    + +
Sbjct: 116 TVATLAYEMCLAAGKKALLGGNIGIPA--------------------LELLEKDADIIVL 155

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++       NL  DH+D H    +Y  AK+R++ +       ++  
Sbjct: 156 ELSSFQLE--TTYTLRPHVACMLNLSDDHLDRHGDMLSYQRAKLRIYRD----ARFSVCN 209

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFP 305
            DDA +  +           +  G       L       NK    I ++GKDF       
Sbjct: 210 RDDAATWPM------TINPDVMFGLSSSERGL-----SWNKDTAHILLDGKDFLDSHACM 258

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GE  + N   A  + +  GID   +         +  R + V  +     I    A  
Sbjct: 259 LVGEHNMLNIQAATAMAMLAGIDLTAIKLAATSFAGLAHRCQTVAVSHHVRWINDSKATN 318

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +    +  +     G++I++   G  +     P+  +  + + ++  +  D P+    
Sbjct: 319 VGATIAAIDGLSPTCKGKLILI-AGGDGKGADFSPLEERFNVQVNELITLGKDGPK---- 373

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AE+           +   A++ A  +      +++
Sbjct: 374 ---LAELKANSHQVATLDD---AVQLAATLAEGDATVLL 406


>gi|119358487|ref|YP_913131.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
 gi|158512610|sp|A1BJY0|MURD_CHLPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119355836|gb|ABL66707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 464

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 123/369 (33%), Gaps = 40/369 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A          I+ +TGT GK++ A+ V +I +  G++        ++ +  Q     
Sbjct: 97  EVAYWFCK---ARIIGITGTDGKTTTATLVHRIFETDGMTHRY--RAFSVGNIGQPFSS- 150

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
                        L+ +      +E SS+ L+       +      TN+  DH+D +   
Sbjct: 151 -----------RVLTMRPEDVAVIELSSYQLE--GCCTFRPDVSVITNITPDHLDRYEGE 197

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y   K R++     +++      D               CR++  G   K  H    
Sbjct: 198 LHNYAQTKYRIYAHQGKEDTLVYNDDDPLLHDHFASNRETLPCRIVPFGIGCKPEHAGFA 257

Query: 283 CAIHNKQQVTISVEGKDFDFLFP--------LPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            A+       +   G   + +            G   + NAL A     A+GI +  +  
Sbjct: 258 AAVRFCDHRIVFDAGAKSENIIEAEDFLKRSFRGRHNIANALAAVAAARALGIGNEAIRS 317

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L+    V  R EFV T      I    A   N+L   L+ +        +V+   G D+
Sbjct: 318 ALQGFSGVEHRQEFVRTLDGSDWINDSKATNINALSQALETVP-----GRMVLIAGGRDK 372

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
               R I G +   +A +  +       E  EK+ A    G+       +  EA+  A  
Sbjct: 373 GSDYREIAGIVRKKVAALVAI------GEAREKLCAA-YGGMVDVRSANSLEEAVSLARA 425

Query: 455 MLNKQDVLV 463
           ++     ++
Sbjct: 426 LVEPGQTVL 434


>gi|307132585|ref|YP_003884601.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
 gi|306530114|gb|ADN00045.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
          Length = 437

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 138/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        +   I +V +   F          +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALATPILCEAAEAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +G +    G     +                      L  Q      +
Sbjct: 117 TVTTLVGEMAHAAGWAVGVGGNIGVPA--------------------LELLKQESQLYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH + +    Q Y  AK+R++E         I+
Sbjct: 157 ELSSFQLE--TTYSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYEN----AKVCIV 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R LS G      HL +      + +  + V+G+        
Sbjct: 211 NADDALTMPV----RGADARCLSFGVDVGDYHLNR-----QQGETWLRVKGERVLNTREI 261

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+GI  +  L  L     +P RF+          +    A 
Sbjct: 262 KLVGQHNYTNALAALALADAVGIPRSSALIALTSFTGLPHRFQLALARHDVRWVNDSKAT 321

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P++  +  D   +     D      
Sbjct: 322 NVGSTEAALSGL--HVDGTLHLLL-GGDGKSADFSPLLRYLQGDRIRLYCFGRD---GGQ 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     +A+R         D++++
Sbjct: 376 LAALRPEIAE------QTETMEQAMRLIASRAQPGDMVLL 409


>gi|154706319|ref|YP_001425285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii Dugway 5J108-111]
 gi|189082876|sp|A9KER6|MURD_COXBN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154355605|gb|ABS77067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           Dugway 5J108-111]
          Length = 442

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 130/363 (35%), Gaps = 54/363 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 + I+A+TG++GK++V + V  + + +G +    G               TP P 
Sbjct: 100 FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIG-----EPVLEQITPEP- 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                          +  +E SS  L+      ++  A +  N+  DH++ + T Q Y  
Sbjct: 154 --------------DYYVLELSSFQLE--TTFSLRSQAATILNISEDHMNRYATLQDYLR 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R++ +        I+ AD+      +          LS G               + 
Sbjct: 198 AKQRIYTDCF----IPIVNADEPEIWRHLPFNKKP----LSFGLNNAA----DFSLAEHN 245

Query: 289 QQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           Q+ +I+ +GK         L     + NAL A  L  A  I    +L  L     +  R 
Sbjct: 246 QKTSIAYQGKILMPIQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFSGIRHRC 305

Query: 347 EFVGTNSRGGRIYVDYAH-----TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           ++V          +DY +        +    ++++     G++I++   G  +     P+
Sbjct: 306 QWVRKYKE-----IDYYNDSKGTNVGATRAAIESLGQAAKGQLILI-AGGQGKGADFSPL 359

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +   +  + ++ +D P  E   K    I H         +  EA++ + +     D+
Sbjct: 360 KDVVKRYVKQVILIGEDAPLLEKTLKEITVIKHA-------DSMNEAVKRSTQAAKAGDI 412

Query: 462 LVV 464
           +++
Sbjct: 413 VLL 415


>gi|271502147|ref|YP_003335173.1| UDP-N-acetylmuramate [Dickeya dadantii Ech586]
 gi|270345702|gb|ACZ78467.1| UDP-N-acetylmuramate [Dickeya dadantii Ech586]
          Length = 460

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 121/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEDCGYKPGFV--IGGVPGNFTVSARLGDSPFFVVEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +           S                   NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYS------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+ + D + K+VM            VG +G     KKV    +  QV + 
Sbjct: 209 -RLVPGKGRIIVPSHDLHLKQVMSM--GCWSEQELVGEEG-VWKAKKVTTDASVFQVYLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +    +  + L GE  ++N L+A      +G+  A     L        R E  GT + 
Sbjct: 265 -DQLVGEVTWNLVGEHNMHNGLMAIAAARHVGVTPAEACRALGGFINARRRLELRGT-AH 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
           G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  AD
Sbjct: 323 GVSVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGHCKNELAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++       I T +EM        D ++V   
Sbjct: 383 GVFLFQ-------PQHIPWQVSEVADACVQPAYWSADIDTLVEMVSKVAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|238783538|ref|ZP_04627560.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia bercovieri ATCC 43970]
 gi|238715593|gb|EEQ07583.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia bercovieri ATCC 43970]
          Length = 461

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 123/363 (33%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAIAGTHGKTTTAGMVTWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLVMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+  +D + K+VM  A         VG  G +   +KV    +  +V 
Sbjct: 207 LV-RLVPGKGKIIVPDNDNHLKQVM--AMGCWSEQELVGETGSWF-ARKVSTDASVYEVF 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E    +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDNE-LVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRVLGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  
Sbjct: 321 AHGVMVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  +++      I+  +    I T ++M        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAHWSADIDTLVDMIVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|312888793|ref|ZP_07748356.1| UDP-N-acetylmuramate/alanine ligase [Mucilaginibacter paludis DSM
           18603]
 gi|311298668|gb|EFQ75774.1| UDP-N-acetylmuramate/alanine ligase [Mucilaginibacter paludis DSM
           18603]
          Length = 452

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 109/321 (33%), Gaps = 39/321 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++ +S +  I + SG+          I++    N L   S + + +A  Y
Sbjct: 115 TIAVAGTHGKTTTSSMIAHILKSSGIDCSA--FLGGIATNYNTNVLFGKSKVVVIEADEY 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S    H                         T++  DH+D +   +       +LF  
Sbjct: 173 DRSFLTLH-------------------PDVAIITSMDADHLDIYGDHER-LKESFQLFAS 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L      I      Y K +   + +      + G       +     I N         
Sbjct: 213 QLKIGGRLI------YHKGLPIHSGD------TYGINTFADAIGDNIRIENGAFWFNFNN 260

Query: 297 GKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           GK+      L       + NA+ A    + + +    + + L     V  RFE+V    +
Sbjct: 261 GKETINNIQLGIAGIHNIDNAVAAIQAALYLKVKPDAIHKALTSFRGVKRRFEYVVKTDK 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH    L   + +I+ +  G+ +  VF                  LD++D  
Sbjct: 321 HIYI-DDYAHHPEELRACISSIKQLYPGKKLTTVFQPHLFTRTRDFVDGFADVLDMSDEL 379

Query: 414 IVTDDNPRSEDP-EKIRAEII 433
           ++ D  P  E P E + A++I
Sbjct: 380 LLMDIYPARELPIEGVNADMI 400


>gi|78356087|ref|YP_387536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|122063243|sp|Q313Q5|MURD_DESDG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78218492|gb|ABB37841.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 447

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 67/401 (16%), Positives = 119/401 (29%), Gaps = 70/401 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL--FASRLYGKHPENILAVTGT 123
            GA+ +V S    +           P L      + ++    A+R        +LAVTGT
Sbjct: 82  AGADILVPSPGVPVASL-------LPYLDASRPPEIMAEIDLAARCV---TSPVLAVTGT 131

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++  S    + + +G   F  G   T  S    +                       
Sbjct: 132 SGKTTTVSLCAAMLRAAGKRVFLGGNIGTPLSEYVLDV--------------AAGEAPAD 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +E SS  L       ++       N+  +H+DYH   Q Y +AK RLF    P +  
Sbjct: 178 VLVLEVSSFQL--QTCTTLRPEVAVLINISANHLDYHADMQEYLDAKFRLFALQGPDDLA 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +    +  +      A                                   +       
Sbjct: 236 VLQSGMEELADRYALAARREF------------------------------FDAVRRFPR 265

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   + N   A   C A G+  +   + +E+   +  R E V   +    +    +
Sbjct: 266 TALLGSHNMANIEAAWLACRAFGVTQSQAAQAVEEFAPLEHRLEKVDEVAGVLFVNDSKS 325

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            T +S++  L++          V+  CGG    G    +  +    A    +        
Sbjct: 326 TTVDSMKAALESF------DRPVLLLCGGKWKGGDLVSLIPVVRRHAKAVGL------FG 373

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +I       +       +   A R    M    DV+++
Sbjct: 374 ASREIFEHAWADVVPMSWDHDLQTAFRRMTAMAQPGDVVLM 414


>gi|119475944|ref|ZP_01616296.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
 gi|119450571|gb|EAW31805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
          Length = 451

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 105/311 (33%), Gaps = 30/311 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H + ++AV GT GK++  S    I + +GL    +     +     +   +         
Sbjct: 90  HDKWVIAVAGTHGKTTTTSMTAWILEYAGLKPGFL-----VGGVPANFGYS--------- 135

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       +  +         R   +        F NL  DH D      A  N +
Sbjct: 136 --ARLGETDFFVIEADEYDTSYFDRRSKFLHYHPRTAIFNNLEYDHADIFPDLAAIQN-Q 192

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P E   I  ++D    EV+        + LS G       L       +   
Sbjct: 193 FHLLVRTIPGEGLIIHPSNDNNVAEVL--LKGCWSKTLSFG-PDISSKLSGTAISEDHSH 249

Query: 291 VTISVEGKD-----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            ++S+ G D      +  + + G   + NAL A      +GI  A+  E L K   V  R
Sbjct: 250 FSVSLNGPDQNKIVGEINWLMTGLHNMNNALAAIAAARHVGISPAIACEALSKFTGVKRR 309

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMG 403
            E +  ++    +Y D+AH   ++E  L+ +R       I+     G      G      
Sbjct: 310 MEVIYESAEM-TVYDDFAHHPTAIETTLEGLRKQVGKDAILAIVEPGSHTMKLGIHADTL 368

Query: 404 KIALDLADIAI 414
             ++  AD  I
Sbjct: 369 ADSVSHADEVI 379


>gi|162420115|ref|YP_001608263.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Angola]
 gi|162352930|gb|ABX86878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Angola]
          Length = 460

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 120/363 (33%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDIKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+  +D + K+VM  A         VG  G +   +KV    +  +V 
Sbjct: 207 LV-RLVPGKGKIILPDNDNHLKQVM--AMGCWSEQELVGETGSWF-ARKVSTDASVYEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LD-NNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  +++      I+       I   ++M        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|146328783|ref|YP_001209872.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
 gi|146232253|gb|ABQ13231.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
          Length = 436

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 126/350 (36%), Gaps = 45/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + + AVTG++GKS+V + +    +  GL +   G                     L   L
Sbjct: 101 KPVAAVTGSNGKSTVVTMLADAARAVGLKTQLCGNIGK---------------SVLTAWL 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +      +E SS+ L+  R   + +  G   N+  DH+D + +   Y  AK    
Sbjct: 146 ED--EEEPDLYVLELSSYQLE--RCPSLMIDVGVVLNVTPDHLDRYDSFLDYVAAK---- 197

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L  +    I+  DD Y +++   +        +V +  + ++  +  AI    Q  ++
Sbjct: 198 SHLAQQTQLTILNGDDEYCRQMAPLSRQ------TVFFGAQCVNRVENGAIIVNGQTVLT 251

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G+   YNALVA  +   +GID +  LE L+    +P R   V   + 
Sbjct: 252 AD------ELKIHGQHNAYNALVALLMASGLGIDISYTLEALKNFRGLPHRMCEVACFND 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +       + ++      +   T    ++V G G  +D  +   +   A     + I
Sbjct: 306 ---VLWLNDSKATNIASTAAALVGCTRPTWLIVGGVGKGQDFHQLAAVLLQAPIKHVLMI 362

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    D   + A        F + G    A+  A +  +  D +++
Sbjct: 363 -------GVDNHTMIAAFKKANIAFHDCGTIKAAVSYAYQNADAGDQVLL 405


>gi|262044868|ref|ZP_06017911.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037837|gb|EEW39065.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 438

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 154/400 (38%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIELF--------CREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGINVGVGGNIGLPALM--------------------LLDTDRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYEN----AKTCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +  +
Sbjct: 212 NADDALTMPV----RGADERCISFGVDVGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 307 P--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A 
Sbjct: 263 PLTGQHNYSNALAALALADAAGLPRASSLKVLTTFTGLAHRFQLVLDHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D     +
Sbjct: 323 NVGSTEAALNGLQL--DGTLYLLL-GGDGKSADFTPLKRYLGGDRIRLYCFGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPEVA------VQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|91786971|ref|YP_547923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
 gi|118595672|sp|Q12EL7|MURD_POLSJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91696196|gb|ABE43025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
          Length = 587

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 133/373 (35%), Gaps = 54/373 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LA+TGT+GK++V S V Q+ QR+G +    G    I     D          L +    
Sbjct: 209 VLAITGTNGKTTVTSLVGQLVQRAGKTVAVAG---NIGPTLLDTLSAHLDADTLPQ---- 261

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS  L        +  A    N+ +DH+D+H    AY  AK R+F  
Sbjct: 262 -------VWVLELSSFQLADA--QDFEPTAAVVLNVTQDHLDWHGDMDAYVAAKARIFGR 312

Query: 237 LLPKESPAIIYADDAYSKEVMK-----RAHNAGCRVLS------------VGYQG----- 274
                +  ++  DD    E++      R      R  S             G +      
Sbjct: 313 ----STFMLLNRDDPRVMEMLPTPVKVRLRPPQVRPHSTFGAGEPQRPGDYGIETVNGMA 368

Query: 275 ---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +     +       ++V + ++         + G     NAL A GL +A G   A 
Sbjct: 369 WLVRAAQADETIKRRKGEEVELHIQRLMPLDALRIRGRHNATNALAALGLAVAAGCSLAP 428

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L  L +    P R E +   +     Y D +  +N +      +  + + R +VV   G
Sbjct: 429 MLHGLREYRGEPHRVESIAVVNDVE--YFDDSKGTN-VGATAAALAGLGAERKLVVILGG 485

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
             + Q   P+   ++     + ++  D P       IR+ +       ++  +  EA+  
Sbjct: 486 EGKGQDFSPLAEPVSHHARAVVLIGKDAP------LIRSALQASQVALLDAASMQEAVSL 539

Query: 452 AIEMLNKQDVLVV 464
           A    +  D +++
Sbjct: 540 AAAQAHTGDAVLM 552


>gi|326388916|ref|ZP_08210498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206516|gb|EGD57351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 452

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 120/401 (29%), Gaps = 65/401 (16%)

Query: 67  GAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G   +VVS    L              P++        + LFA+      P  ++ +TGT
Sbjct: 64  GFAGVVVSPGVPLNRHPITAHAAAHGVPVI------GDIELFAAIRPELPPHRVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + V  IC+ +G  +   G                     L          G  
Sbjct: 118 NGKSTTTALVHHICREAGFPARMGGNIG------------------LPVLGEEALPAGGV 159

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +V   +S           ++    +  N+  DH+D +     Y  +K RLF    P +  
Sbjct: 160 YVLELSSYQ---IDLTYSLEADVAALINISPDHLDRYDGFAGYAASKARLFAMQRPDQHA 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                D          AH    R +           +   A+ + Q    S++G      
Sbjct: 217 VFGTGDADTGAIADAVAHVREARFV----------HRPDPALLSGQADWPSLQGP----- 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                   + NA +A  +  A+GI  A+    L     +P R E V        +    A
Sbjct: 262 ------HNLQNAAIAVAIAEALGIAEAVWRPALASFVGLPHRMERVVEVDGVLFVNDSKA 315

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               S    L     I     I      GD      P    +         + +  PR  
Sbjct: 316 TNPASTAPALAAYPRI---HWICGGVPKGDDLDDCAPWFDHVVEAYT----IGEAGPRF- 367

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 AEI+             +A+R A+      DV+++
Sbjct: 368 ------AEILRDHVPVRRSEMLCDAVRDAMAAAKPGDVVML 402


>gi|289704957|ref|ZP_06501372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
 gi|289558293|gb|EFD51569.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
          Length = 527

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 141/420 (33%), Gaps = 55/420 (13%)

Query: 67  GAEA--IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           GA A  +V S  +        A   +  PI    +      L      G+   + + +TG
Sbjct: 99  GAAADLVVTSPGWRPDQPLLMAAHAAGLPIW--SDVELAWRL--RERAGRKTADWVCLTG 154

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GK++  + V+ I +  G  +   G   T                      +    +G 
Sbjct: 155 TNGKTTTVTMVEAILRADGRRAVACGNVGT------------------PVLDAIRDPEGF 196

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +++E SS  L  H   G+   + +  NL  DH+D+H + + Y  AK +++        
Sbjct: 197 DVLALELSSFQL--HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGKVYAN---TRV 251

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D  ++ +++RA +      ++G+      L  +  +         ++ +  + 
Sbjct: 252 ACVFNEQDPVTRTLVERA-DVQEGCRAIGFTTDTPGLSDIGVVDGILVDRAFLDNRRHEA 310

Query: 303 LF--------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +         P+     V NA  AA L  A+G+  A V E L        R + V T+  
Sbjct: 311 IALAERADLGPVAPRHTVANAAAAAALTRAVGVSPAAVAEGLRSYDRGEHRIQLVATSRD 370

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +    A   ++ +  L    ++           G  +      ++   A  L  + +
Sbjct: 371 IMWVNDSKATNPHAADASLAAFSSVVW------LAGGLPKGVTYHELVAAHAHRLRAVVL 424

Query: 415 VTDDNPRS---------EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  D             E P         G           EA+R A  +    D +++A
Sbjct: 425 LGRDTSALRAALAAHAPEVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDTVLMA 484


>gi|188584358|ref|YP_001927803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium populi BJ001]
 gi|179347856|gb|ACB83268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           populi BJ001]
          Length = 455

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 102/326 (31%), Gaps = 51/326 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATI------RSNTPIL----VVDNTRKFLSLFASRLYGKHPEN 116
           G  A+V++    L             ++  PI+    +    R  L+             
Sbjct: 65  GFSALVLAPGVPLTHPEPHWTVGLAQQAGIPIIGDIEIFCRERAALA---------PEAP 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TGT+GKS+  +    + + +G      G   T                     LS 
Sbjct: 116 FVAITGTNGKSTTTALTAHLLRHAGRDVQMGGNIGT-------------------AVLSL 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VE SS  +D      +    G   NL  DH+D H T + Y   K RL   
Sbjct: 157 APPAENRVHVVELSSFQIDL--TPSLDPSVGILLNLTPDHLDRHGTMENYAAIKERLVAG 214

Query: 237 LLPKESPAIIYADDAYSKEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  A+I  DDAY   +   +R       V   G        +          V   
Sbjct: 215 ----SDLAVIGVDDAYCAAIAGRRRGERIRLHVEGHGDAAGDYVCRAGAVRGPDGAVIAE 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G     +  L GE  + NA  A    + +G+  A +   L+    +  R E +     
Sbjct: 271 ISG-----IQSLLGEHNLQNAAAAVAAALRLGLTGAEIAAGLKSFPGLAHRMEPLRRIGP 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT 380
              +    A  ++S E  L   R I 
Sbjct: 326 TLFVNDSKATNADSTEKALLAFRDIH 351


>gi|16803645|ref|NP_465130.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           EGD-e]
 gi|224501453|ref|ZP_03669760.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           R2-561]
 gi|24212042|sp|Q8Y6S8|MURC_LISMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16411034|emb|CAC99683.1| murC [Listeria monocytogenes EGD-e]
          Length = 447

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 124/358 (34%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +      +S+ IG  +   +                      
Sbjct: 104 IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGT---------------------- 141

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   + ++EA  +   +H L   K      TN+  DH DY ++    FNA    FE L
Sbjct: 142 --KDAEYFALEACEYQ--RHFLAY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+    D    E+ K   +        G + +F   K V       +  +    
Sbjct: 193 GKQVKKAVFALGDD--AELRKLTLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHRE 249

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    F  P  G+  V NAL    LC   G+    V   L+    V  RF    T     
Sbjct: 250 EFLSSFEIPAYGDHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVKRRFSI--TEKGNQ 307

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH  + +   +   R      +++ VF                 +L+LAD   +
Sbjct: 308 VLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYL 367

Query: 416 TDD--NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            D   + R +      A++ H   G   I++ +  E ++        + V++  G G 
Sbjct: 368 CDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAGD 419


>gi|325202111|gb|ADY97565.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           M01-240149]
 gi|325208135|gb|ADZ03587.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis NZ-05/33]
          Length = 458

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 119/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTVVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   I        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL        +G+      E L     
Sbjct: 265 A----DGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                ++L  AD            D     AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPVSLKEADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNAEA 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|160936902|ref|ZP_02084266.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440092|gb|EDP17839.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC
           BAA-613]
          Length = 449

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 134/361 (37%), Gaps = 52/361 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +    + I+ +TGT GKS+V + +  + +++G+ +  +G                    
Sbjct: 99  FFQCFRDQIIGITGTKGKSTVTTLLYHLLKQAGMDALLVGNIG----------------- 141

Query: 169 YLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
               AL ++   +  T +  E S H L+   +       G   N+  +H+D++ T + Y 
Sbjct: 142 --IPALDHMEEVKPDTRIVFELSCHQLEYMTVS---PHIGILVNIHEEHLDHYGTMEKYV 196

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +F+   P +             + +         ++  G  G     K++  +  
Sbjct: 197 EAKHHIFKNQGPDDILICNV-------QCLPEEGTCPSGLIRAGMDGS---GKELDVVQE 246

Query: 288 KQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +    +   GK F        L G+   ++  VA G+C  +G+D  +    L+    +P 
Sbjct: 247 QDGTWVHFRGKSFCIPTDEIKLLGQHNYFDIGVAYGVCSILGMDDQVFARGLKTYEPLPH 306

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R +++G    G + Y D   T    +  ++ ++T+       V   G DR    R ++  
Sbjct: 307 RLQYIG-EREGVKYYDDSISTI--CDTTIQALKTLKDTD--TVLIGGMDRGIDYRELIEY 361

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA------IRTAIEMLNK 458
           ++       I+ +        ++I  EI    P F  +   I A      ++ A ++   
Sbjct: 362 LSDCQVPHIILME-----ATGKRIYQEIHKYYPEFKNRARLILAEHLEDGVKRARQITRP 416

Query: 459 Q 459
            
Sbjct: 417 G 417


>gi|288906009|ref|YP_003431231.1| UDP-N-acetyl muramate-alanine ligase [Streptococcus gallolyticus
           UCN34]
 gi|306832028|ref|ZP_07465183.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325978976|ref|YP_004288692.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732735|emb|CBI14309.1| UDP-N-acetyl muramate-alanine ligase [Streptococcus gallolyticus
           UCN34]
 gi|304425954|gb|EFM29071.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178904|emb|CBZ48948.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 443

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 96/301 (31%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +  + +    +S+ IG  +   S   +  +               
Sbjct: 106 FGVAGAHGKTSTTGLLSHVLKNITDTSYLIGDGTGRGSANSNYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY ++    F+A     +++
Sbjct: 155 ----------EYQRHFMPYH------PEYSIITNIDFDHPDYFKSIDDVFDAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    +Y DDAY +++   A      +   G++         +    N     +   
Sbjct: 199 ---QKALFLYGDDAYLRKITSDA-----DIYYYGFKDTDDFVAYDIVRTTNGSAFKVKHG 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++   F  P  G   + NA          GID  LV EH++    V  RF     N+  
Sbjct: 251 DEELGSFHLPAFGRHNILNATAVVANLYIAGIDMELVAEHMKTFAGVKRRFTEKVINN-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 309 TTIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFADALNQADSVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|33863701|ref|NP_895261.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9313]
 gi|60390535|sp|Q7V5V5|MURD_PROMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33635284|emb|CAE21609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 460

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 113/347 (32%), Gaps = 37/347 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V+S   +    + T      I             A           +A+TGT+GK++V
Sbjct: 72  AVVISPGIAWDHPTLTALRQRGI-------DIDGEMAVAWRSLSHLPWIAITGTNGKTTV 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  + + +GL +   G     ++     +   P+       +  LSS  +      A
Sbjct: 125 THLLNHVLESNGLRAPMGGNVGHAAAEVA-LKWRQPNAQRPDWLVMELSSYQIEAAPEIA 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                            G +TNL  DH++ H T  AY   K      LL +    I   D
Sbjct: 184 --------------PRMGIWTNLTPDHLERHGTLDAYRTIK----RGLLERSEIRIFNGD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPG 308
           D      ++   ++  + L V  +G      +     + + +    +G  F      +PG
Sbjct: 226 DPD----LRSQRSSWDKGLWVSSEGPGTANHRADFWIDAEGLVREPQGALFAASALAMPG 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N L+        G+ +  +   L     VP R E +G   +        A   ++
Sbjct: 282 QHNLQNLLLVTAAARQTGLPAKAIEASLRSFPGVPHRLEQLGHIQQMSVYNDSKATNYDA 341

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + LK +          V   GG   QG      K     A   I+
Sbjct: 342 ACVGLKAVPP------PAVVLAGGQTKQGDASGWLKQLDQNACAVIL 382


>gi|284051570|ref|ZP_06381780.1| cyanophycin synthetase [Arthrospira platensis str. Paraca]
          Length = 871

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 116/362 (32%), Gaps = 34/362 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D             A   L    V    +E + 
Sbjct: 481 LLAHIMKQTGKV---VGYTTTDGTYIGDYMAEPGDNTGPQSAHLILCDPTVEVAVLECAR 537

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           AK++ +  E +     AI+ ADD
Sbjct: 538 GGILRSGLGFDTCDIGVVLNVAADHLGLGDIDTIEQMAKVKSVVAEAVSDRGYAILNADD 597

Query: 251 AYSKEVMKRAHNAGCR----------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KD 299
                +  R                 V      G     +       K   T+ +E   +
Sbjct: 598 PLVAAMSARVKAQVAYFSMNPDNEIIVRHTEAGGLAAVYENGYLSILKGDWTLRIEQAVN 657

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRG 355
                     F + NAL A     A G+    +   L          PGR       S  
Sbjct: 658 VPLTMGGMAPFMIANALAACVAAFAQGVKIEHIRTALATFIASADQTPGRMNLFNMGS-- 715

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +DYAH   S E +   +     G  I V G  GDR       +GK++  + D  IV
Sbjct: 716 YHALIDYAHNPASYEALSGFVNNW-PGPRIGVVGGPGDRRDEDFVTLGKLSAKMFDRIIV 774

Query: 416 -TDDNPRSEDPEKIRAEIIHGIP-----------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
             DD+ R   P      I  GI             +    N  +AI  A+E   K+ ++V
Sbjct: 775 KEDDDTRGRPPGDAAVLITQGIEEVLSPVRDPRVKYETVLNETDAINMALEQAPKESLVV 834

Query: 464 VA 465
           + 
Sbjct: 835 IL 836


>gi|84516392|ref|ZP_01003751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509428|gb|EAQ05886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Loktanella
           vestfoldensis SKA53]
          Length = 470

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 145/409 (35%), Gaps = 46/409 (11%)

Query: 67  GAEAIVVSSAYS----LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAV 120
           G  A++VS   +        +        + V ++   F   FA+  +        ++AV
Sbjct: 66  GVAALIVSPGIAHLYPAPHPAIAAAWAAGVPVDNDIGLFFRSFATDDWDGFETTPRVVAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  I   SG  +   G                         L    ++
Sbjct: 126 TGSNGKSTTSALIHHILAESGRPAQLAGNIG-------------------RGVLDIAPAR 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +       TNL  DH+D H     YF AK RLF E  P 
Sbjct: 167 DGEVVVLELSSYQTDLAR--ALTPDVAVLTNLSPDHLDRHAGHGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAII--YADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVE 296
            +   +        + ++ +   +    ++S G +       +       ++ +    V 
Sbjct: 225 RAVIGVDENEGRYLANQLAQGVGDDRVVLVSSGQKLTEAAWSVFARKGFLSEYRHGRQVG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D   +  LPG     NA  A  +C  +G+    +   ++    +P R + V    RGG
Sbjct: 285 SIDLRAIAGLPGAHNHQNACAAYAVCRTLGLGPRAIEAAMQSYPGLPHRSQLVA--DRGG 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             +V+ +  +N ++   K ++     R I     G  ++ G   ++  +A       I  
Sbjct: 343 VRFVNDSKATN-VDSAAKALQAFARIRWIC---GGLQKEGGLDGLLPHLAQVAKAYVI-- 396

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                  +      ++  G+P  +       A+  A       DV+++A
Sbjct: 397 -----GREAADFARQL-PGVPTEVCTT-MARAVALAAAEAEPGDVVLLA 438


>gi|77409926|ref|ZP_00786534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77171465|gb|EAO74726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 300

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 101/278 (36%), Gaps = 22/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TNL   H+DYH + + Y  AK  + +  +      ++
Sbjct: 25  MELSSFQLM--GVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNI-QNQMSSSDFLVL 81

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +   SKE+ K          S   +    +++     +  + + +SV+         +
Sbjct: 82  NFNQGISKELAKTTKATIVP-FSTTEKVDGAYVQDKQLFYKGENI-MSVDD------IGV 133

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL    +    GI + ++ E L     V  R + +G    G   Y D   T+
Sbjct: 134 PGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTN 192

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +    K +        +++   G DR      ++  I      + +        E   
Sbjct: 193 --ILATQKALSGF-DNTKVILIAGGLDRGNEFDELIPDITGLKHMVVL-------GESAS 242

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +++         + +  +  +A+  A E+  + DV+++
Sbjct: 243 RVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILL 280


>gi|323701286|ref|ZP_08112961.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533888|gb|EGB23752.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 462

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 100/314 (31%), Gaps = 15/314 (4%)

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           S I    +D    T     +   L+           + A                     
Sbjct: 133 SLIGQMFRDAGYHTLVAGNIGLPLASEVENYSRQDIIVAEVSSFQLETTQSFAPRVAVVL 192

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D H +   Y  AK  +F     +E  A++  DD  ++E+     +        
Sbjct: 193 NVTPDHLDRHGSMAEYIRAKSLIFAHQ-DQEDWAVLNYDDPVTREMAADCPSQVLFFSRQ 251

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               K I+++    +   Q VT             +PG   + NAL A     A+GI + 
Sbjct: 252 HILEKGIYVQDGKIMVADQGVTEITP----VNTLRIPGAHNLENALAAVAAGYAMGIAAT 307

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   LE    V  R E+V T      I        ++    L           I++   
Sbjct: 308 DLARTLESFAGVAHRLEYVATIDGVKYINDSKGTNPDAAIKALDA-----YNEPIILIAG 362

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G ++         KI   +  + ++     + E      A    G    ++  +  +A+R
Sbjct: 363 GKNKGSDFTQFARKIKEKVRVLIVLGLHGYQIE-----AAARDQGFTNILQAQDYPQAVR 417

Query: 451 TAIEMLNKQDVLVV 464
            A +     +V+++
Sbjct: 418 LAHQQARPGEVVLL 431


>gi|269960239|ref|ZP_06174614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
 gi|269835046|gb|EEZ89130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
          Length = 437

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 82/403 (20%), Positives = 143/403 (35%), Gaps = 68/403 (16%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V +   +L   +    I   TP  VV +      LFA  +     + ++A+TG++G
Sbjct: 69  ADLVVTNPGIALATPEIQTIIAKGTP--VVGDIE----LFAWAVD----KPVIAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL+    G     +                      L  Q     
Sbjct: 119 KSTVTDLTGVLAKAAGLTVGVGGNIGVPA--------------------LDLLEQDADLY 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +KL A +F NL  DH+D +     Y  AK+R+F+        A+
Sbjct: 159 VLELSSFQLE--TTASLKLKAAAFLNLSEDHMDRYDGMADYRQAKLRIFDN----TELAV 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFD 301
           +  DD       +        +++ G   +   L+    +   + + Q+V  S E     
Sbjct: 213 VNRDD------RETFPETETPLVTFGSDEQAYGLEVDGNRTWLLDHGQRVIASDE----- 261

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+  + NALV   L  A G+D    L  L+    +  R + V  N RG +   D
Sbjct: 262 --LKLVGKHNLANALVVLALLKAAGVDYHKSLNALKTYTGLTHRCQVVADN-RGVKWVND 318

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+ +  M   +    T    ++V G G   D    P+    A     +     D   
Sbjct: 319 SKATNIASTMAALSGLESTGKLYLLVGGVGKGADFT--PLKPIFATLNLQLCCFGADG-- 374

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    E +             + I+     L   D++++
Sbjct: 375 --------DEFMPLHESATRFDTMEDVIQQISSQLKTGDMVML 409


>gi|253690076|ref|YP_003019266.1| UDP-N-acetylmuramate [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756654|gb|ACT14730.1| UDP-N-acetylmuramate [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 461

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 122/365 (33%), Gaps = 42/365 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTS--TISSFAQDNRLTTPSPIYL 170
             ++AV GT GK++ A  V  I +  G     +  G     T+S+   D+          
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADEY 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A     S+ V +                          NL  DH D     +A     
Sbjct: 163 DCAFFDKRSKFVHYC------------------PRTLVLNNLEFDHADIFDDLKAIQKQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L   L+P     I+  +D   K+VM            VG +G +   +KV    ++ Q
Sbjct: 205 HHLV-RLVPGSGKIILPTNDLNLKQVMGM--GCWSEQELVGEEGTW-RAQKVSIDASQYQ 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V ++ E    +  + L GE  ++N L+A      +G+  A     L        R E  G
Sbjct: 261 VYLNNE-LVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELRG 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--L 407
           T   G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L
Sbjct: 320 TE-HGVTVYDDFAHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSL 378

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLV 463
             AD   +         P  I  +++      ++  +    I T +E         D ++
Sbjct: 379 GRADEVFLFQ-------PAHIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHIL 431

Query: 464 VAGKG 468
           V   G
Sbjct: 432 VMSNG 436


>gi|266624667|ref|ZP_06117602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
 gi|288863458|gb|EFC95756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
          Length = 301

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 95/296 (32%), Gaps = 20/296 (6%)

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  + +  S  G         ++     TN+G  HI+   +Q+  F  K+ + + L  
Sbjct: 1   DEIGVIELGMSEPGELTVIAGIAQIQMAVITNIGITHIEQLGSQENIFREKLSIQDGLT- 59

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
           +     +  DD   K+   R    G   +  G  +        V   +     T     +
Sbjct: 60  EHGILFLNGDDELLKKTTAR---DGFETIYYGTGENCHYRAVDVRLENGYPVFTAVCGDE 116

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G   V NA+V+  +    GI      + L +      R +   T   G  I
Sbjct: 117 QVPVRLKVMGTHNVANAMVSLAVASVCGIPMEAAAKQLAEFTGFQNRQQIYHTG--GMTI 174

Query: 359 YVD-YAHTSNSLEMILKNIRTITSGRIIVVFGC-----GGDRDQGKRPIMGKIALDLADI 412
             D Y  +  S++  L+ + +I   R  V         G D  +    I   IA    D 
Sbjct: 175 IDDTYNASPVSMKAGLEVLNSIEHSRRRVAVLADMKELGPDSPRYHYEIGTYIAAHPVDK 234

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
             V       E  ++I   +    P  +  E  +R   +      L + D ++  G
Sbjct: 235 VAVL-----GEPAKEIARGVREQAPHILVYEFMDREPLVEWLKTELREGDAVLFKG 285


>gi|160915064|ref|ZP_02077277.1| hypothetical protein EUBDOL_01072 [Eubacterium dolichum DSM 3991]
 gi|158432863|gb|EDP11152.1| hypothetical protein EUBDOL_01072 [Eubacterium dolichum DSM 3991]
          Length = 434

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 98/266 (36%), Gaps = 19/266 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+  DH+DY++    Y +A    F   + K    +++ DDA  + +      
Sbjct: 162 RPNYAILTNIELDHVDYYKDLADYCDA-FEAFANQVKKG--IVMFGDDANVRSL-----K 213

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
              + L  G +    +    V    N     +  +   F  F  P  G+  ++N+L    
Sbjct: 214 VTTKHLYYGLEEDNDVRAVNVIQNENGMSFDVIYQNTVFGSFKLPFVGKPLLWNSLGVIA 273

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
           L I  G+ + ++ E L     V  RF      + G     DYAH   +++ +++  RT  
Sbjct: 274 LGIMEGLSAQILQEGLASFPGVKRRFTI--EENHGNVYIDDYAHHPTAVQYMIEAARTKY 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKI-RAEIIHGI 436
            + +II +F                 AL+LAD   + +  +N   E+   I   ++   I
Sbjct: 332 PNRKIIALFKPDRYSRIYYFMDRFAQALNLADEVFLCNFPENAAKEEGIDITIQDLADKI 391

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVL 462
              +       A   A  +  +   +
Sbjct: 392 EKAVVIEEDEAA---ARMLAKRGPAV 414


>gi|22124579|ref|NP_668002.1| ligase [Yersinia pestis KIM 10]
 gi|45440418|ref|NP_991957.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806067|ref|YP_649983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Antiqua]
 gi|108813423|ref|YP_649190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Nepal516]
 gi|145600815|ref|YP_001164891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Pestoides
           F]
 gi|153997296|ref|ZP_02022396.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis CA88-4125]
 gi|165928167|ref|ZP_02223999.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937458|ref|ZP_02226021.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011290|ref|ZP_02232188.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213978|ref|ZP_02240013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401240|ref|ZP_02306740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420474|ref|ZP_02312227.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423266|ref|ZP_02315019.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218930533|ref|YP_002348408.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e
           so-diaminopimelate ligase [Yersinia pestis CO92]
 gi|229839173|ref|ZP_04459332.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896662|ref|ZP_04511829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|229899737|ref|ZP_04514878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903899|ref|ZP_04519012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|270489112|ref|ZP_06206186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294505353|ref|YP_003569415.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Z176003]
 gi|21957381|gb|AAM84253.1|AE013669_3 putative ligase [Yersinia pestis KIM 10]
 gi|45435275|gb|AAS60834.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777071|gb|ABG19590.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Nepal516]
 gi|108777980|gb|ABG12038.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Antiqua]
 gi|115349144|emb|CAL22107.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e
           so-diaminopimelate ligase [Yersinia pestis CO92]
 gi|145212511|gb|ABP41918.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Pestoides
           F]
 gi|149288933|gb|EDM39013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis CA88-4125]
 gi|165914563|gb|EDR33177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919854|gb|EDR37155.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989674|gb|EDR41975.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204773|gb|EDR49253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961280|gb|EDR57301.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049265|gb|EDR60673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057436|gb|EDR67182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679669|gb|EEO75772.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|229687229|gb|EEO79304.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695539|gb|EEO85586.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700440|gb|EEO88472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|262363418|gb|ACY60139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis D106004]
 gi|262367207|gb|ACY63764.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis D182038]
 gi|270337616|gb|EFA48393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294355812|gb|ADE66153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Z176003]
 gi|320013724|gb|ADV97295.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 460

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 120/363 (33%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDIKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+  +D + K+VM  A         VG  G +   +KV    +  +V 
Sbjct: 207 LV-RLVPGKGKIILPDNDNHLKQVM--AMGCWSEQELVGETGSWF-ARKVSTDASVYEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LD-NNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  +++      I+       I   ++M        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|320183625|gb|EFW58468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           CDC 796-83]
          Length = 438

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+       K +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSWKAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|50122848|ref|YP_052015.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613374|emb|CAG76825.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 463

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 122/365 (33%), Gaps = 42/365 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTS--TISSFAQDNRLTTPSPIYL 170
             ++AV GT GK++ A  V  I +  G     +  G     T+S+   D+          
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADEY 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A     S+ V +                          NL  DH D     +A     
Sbjct: 163 DCAFFDKRSKFVHYC------------------PRTLVLNNLEFDHADIFDDLKAIQKQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L   L+P     I+  +D   K+VM  A         VG +G     +KV    ++ Q
Sbjct: 205 HHLV-RLVPGSGKIILPTNDITLKQVM--AMGCWSEQELVGEEG-VWRAQKVAIDASQYQ 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V ++ E    +  + L GE  ++N L+A      +G+  A     L        R E  G
Sbjct: 261 VYLNNE-LVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELRG 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--L 407
           T   G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L
Sbjct: 320 TE-HGVTVYDDFAHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSL 378

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLV 463
             AD   +         P  I  +++      ++  +    I T +E         D ++
Sbjct: 379 GRADEVFLFQ-------PTHIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHIL 431

Query: 464 VAGKG 468
           V   G
Sbjct: 432 VMSNG 436


>gi|114330910|ref|YP_747132.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307924|gb|ABI59167.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 630

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 128/361 (35%), Gaps = 34/361 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + +TG++GK++       I                  S++      + +   +     
Sbjct: 40  QFIGITGSAGKTTTKELCNLILS---------------GSYSVMTTPQSLNTPIIVAETM 84

Query: 176 YLSSQGVTHVSVE--ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ--QAYFNAKM 231
             + +      +E  A   G     L   +   G  TN+ +DH    + Q        K 
Sbjct: 85  LATEKKHKFCIMELGAFKPGALDLPLRLFRPKIGVLTNIEKDHYRAFKGQGVDGIAVEKA 144

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQ- 289
           +L E L  K   AI+  DD   K + +R      RV+ VG   +  I L KV +   +  
Sbjct: 145 KLIEAL-SKNGTAILNMDDPRVKAIGER---CKARVIWVGKNPESTIRLCKVTSRWPEPL 200

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++T++ +GK ++    L G     + L A G+ IA G+     +  L +     GR + V
Sbjct: 201 KLTVTYQGKLYEVPTHLYGTQLALSILSALGVAIAAGLSIEEAINKLVEAVPTAGRMQIV 260

Query: 350 GTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-- 406
            T         D       SL    K ++   + R I V G   D       I  + A  
Sbjct: 261 -TGEDDVTFIRDDMKAPYWSLLAPFKFLKEADALRKIAVVGSISDFSGDSTMIYKRCARE 319

Query: 407 -LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             + AD+ I   DN         + E    + GF+      EA     + L   D++++ 
Sbjct: 320 LREYADMVIFVGDN-AHRALRARKDENDSTLQGFLTL---KEASSFLQKTLRPGDLVLLK 375

Query: 466 G 466
           G
Sbjct: 376 G 376


>gi|69248544|ref|ZP_00604765.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO]
 gi|257878422|ref|ZP_05658075.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257882840|ref|ZP_05662493.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|257889379|ref|ZP_05669032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|257894392|ref|ZP_05674045.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|258616059|ref|ZP_05713829.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium DO]
 gi|260560011|ref|ZP_05832189.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68]
 gi|261207887|ref|ZP_05922572.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6]
 gi|289566955|ref|ZP_06447359.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF]
 gi|293559957|ref|ZP_06676465.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162]
 gi|293569017|ref|ZP_06680330.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071]
 gi|294623289|ref|ZP_06702154.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317]
 gi|314937785|ref|ZP_07845102.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a04]
 gi|314941669|ref|ZP_07848549.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C]
 gi|314948916|ref|ZP_07852285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082]
 gi|314950965|ref|ZP_07854032.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A]
 gi|314992967|ref|ZP_07858363.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B]
 gi|314996414|ref|ZP_07861457.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a01]
 gi|68194390|gb|EAN08897.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO]
 gi|257812650|gb|EEV41408.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257818498|gb|EEV45826.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|257825739|gb|EEV52365.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|257830771|gb|EEV57378.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|260073846|gb|EEW62170.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68]
 gi|260078270|gb|EEW65976.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6]
 gi|289161254|gb|EFD09150.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF]
 gi|291588450|gb|EFF20285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071]
 gi|291597317|gb|EFF28503.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317]
 gi|291606045|gb|EFF35471.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162]
 gi|313589396|gb|EFR68241.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a01]
 gi|313592490|gb|EFR71335.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B]
 gi|313596820|gb|EFR75665.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A]
 gi|313599560|gb|EFR78403.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C]
 gi|313642816|gb|EFS07396.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a04]
 gi|313644706|gb|EFS09286.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082]
          Length = 444

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 121/363 (33%), Gaps = 57/363 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG+ GK+S    +  +      +S+ IG   T     Q    +  +  Y    L+Y 
Sbjct: 108 IAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-DGTGHGDPQAEFFSFEACEYRRHFLAY- 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+ +    F A   +  ++
Sbjct: 166 -------------------------SPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQV 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
              +     Y DDAY +++      A   +   G  +   I  + +    +     +   
Sbjct: 201 ---KKAIFAYGDDAYLRKL-----KANVPIYYYGVTENDDIQARNIERTTSGSAFDV-YH 251

Query: 297 GKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G +F   F  P  G+  + NAL    +     +D   V E +     V  RF        
Sbjct: 252 GDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVKRRFSEKIVADM 311

Query: 355 GGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    ++  +    +      II VF                 ALDLAD  
Sbjct: 312 --TVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKV 369

Query: 414 IVTDD--NPRSE----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
            + D   + R E      E + A+I  G  G + K N +        +L+  D +V+  G
Sbjct: 370 YLCDIFGSAREEQGNVKIEDLGAKIKKG--GEVIKENNVS------PLLDYHDAVVIFMG 421

Query: 467 KGH 469
            G 
Sbjct: 422 AGD 424


>gi|23099686|ref|NP_693152.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanobacillus iheyensis
           HTE831]
 gi|33301400|sp|Q8EP84|MURC_OCEIH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|22777916|dbj|BAC14187.1| UDP-N-acetylmuramate-alanine ligase [Oceanobacillus iheyensis
           HTE831]
          Length = 438

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 106/326 (32%), Gaps = 43/326 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + + +   S+ IG  +   +   D+           +     
Sbjct: 104 IAVTGAHGKTSTTGLLSHVLKSAYPISYLIGDGT--GNGHVDSEYFVFEACEYRRHFLKY 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                    +      TN+  DH DY  +     +A   + + +
Sbjct: 162 -------------------------EPDYAIMTNIDFDHPDYFTSLDDVVDAFQSMADRV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +   +   DD   + +     +    V+  G+        + V    N  +  + V 
Sbjct: 197 ---KKCIVACGDDEQLQGI-----HTKVPVIYYGFNDSNDFQAQNVVETANGTEFDVFVR 248

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +D F+ P  G   V NAL    +C   GI    + + L+    V  RF      S+ 
Sbjct: 249 NTYYDHFIIPTYGNHTVLNALAVIAICHYEGISVEHMKQ-LDTFEGVKRRFTEKEIGSQ- 306

Query: 356 GRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    + + ++   +   +  ++ +F                 +L+ AD   
Sbjct: 307 -IVIDDYAHHPKEISVTIESARKKYPNKNVVAIFQPHTFTRTKTFLKEFADSLNEADNVY 365

Query: 415 VTDD-NPRSEDPEKI-RAEIIHGIPG 438
           + D      ED  ++   ++   IP 
Sbjct: 366 LCDIFKSAREDSGQLTINDLQKLIPN 391


>gi|319782846|ref|YP_004142322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317168734|gb|ADV12272.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 466

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 147/449 (32%), Gaps = 55/449 (12%)

Query: 60  IPQAIAQGA-----EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           I  A  +GA      A V+S    L      ++  +   + + +V +   F      R+ 
Sbjct: 53  IATADLRGADWAKFSAFVLSPGVPLTHPKPHWTVELARGSGVEIVGDIELFCRE---RML 109

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  +A+TGT+GKS+  +    I + +G  +   G    I           P     
Sbjct: 110 SAPTAPFIAITGTNGKSTTTALTAHILKAAGRDAQMGG---NIGRAVMTLDPPEPD---- 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                        H  VE SS+ +D      I   AG   NL  DH+D H T Q Y   K
Sbjct: 163 ------------RHYVVECSSYQIDLA--PSINPTAGILLNLTPDHLDRHGTMQHYAAIK 208

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            RL          AI+  DD++  ++ +R   AG  V+ +  +            +  + 
Sbjct: 209 ERLVAG----SETAIVGIDDSWCAQIAERLERAGRHVIRISKRLPLTDGYFADGSNLMEA 264

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           V        F + +  L G+    NAL A   C+ IG++   +   LE    +  R E V
Sbjct: 265 VHGRYSRVAFLEGIGSLRGQHNAQNALAAVAACLKIGLELGEIQSGLESFPGLAHRMEQV 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G       I    A  +++    L +   I           G  ++ G  P+ G      
Sbjct: 325 GRKDHVLFINDSKATNADAAAPALSSFARIYW------IAGGLPKEGGIEPLRGFFPRIA 378

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAG 466
               I        E      A +   +P +   G    A+  A     K D    +V+  
Sbjct: 379 KAYLI-------GEAAPAFSATLGEAVP-YEISGTLAAAVEHAAHDAAKDDSGEAVVLLS 430

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
               +     N E +          I G+
Sbjct: 431 PACASFDQFKNFEVRGEAFRQAANAIEGV 459


>gi|149910625|ref|ZP_01899263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
 gi|149806353|gb|EDM66328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
          Length = 445

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 139/398 (34%), Gaps = 50/398 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS   ++            + V+ +   F+              I+A+TG++GKS
Sbjct: 70  AKQLVVSPGIAIATPEIAAAQQHGVEVIGDIELFVRAA--------KAPIIAITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +G+ +   G                     +        ++      +
Sbjct: 122 TVTTLVGEMANAAGVKTAIGGNIG------------------IPALDLLDVAEPYQLYVL 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +A +  N+  DH+D +   +AY  AK+ ++++        +  
Sbjct: 164 ELSSFQLE--TTHSLKAVAATVLNVTDDHLDRYPDFEAYRQAKLSIYQD----AQTIVTN 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  +  V     N      SVG       L +         +    EG        + 
Sbjct: 218 RDDVLT--VCATQDNRDVGKHSVGADDADYGLIQQQGCTW---LAYQGEGIISADDLQIT 272

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  L  A G+D    L  L++   +  R EF+   +    I    A    
Sbjct: 273 GVHNLMNALSAIALLDAAGVDRIKTLPGLKQFTGLAHRCEFIRKLNDVMWINDTKATNVG 332

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  +++   GR+ ++   G  +     P++  +  D+A       D  R      
Sbjct: 333 ATLAALDGLKSSVKGRLYLI-AGGDGKGADFGPLVPALRDDIALTYCFGKDGVRF----- 386

Query: 428 IRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
                  G+    +   +   AI    +++   D +++
Sbjct: 387 ------AGLAENTKLVADLDTAIAEISQLVQPGDWVLL 418


>gi|170718781|ref|YP_001783964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 2336]
 gi|168826910|gb|ACA32281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           2336]
          Length = 436

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 136/400 (34%), Gaps = 62/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV+S   S++           + VV +   F             + I+A+TG++GKS
Sbjct: 67  ADLIVISPGLSVKTLEIQTALQAGVEVVGDIELF--------CRYANKPIIAITGSNGKS 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +  GL     G     +                      L  Q      +
Sbjct: 119 TVTTLVSEMAKEDGLKVGIGGNIGIPA--------------------LELLQQDYDLYVL 158

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++E        A+I 
Sbjct: 159 ELSSFQLE--TTYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENC----QRAVIN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLF 304
           A+D  +              ++ G       LK       +  K+++ +  +        
Sbjct: 213 AEDVLT------TTEDLKSPITFGESQADYWLKTENGKQYLMAKERLILPCD------EM 260

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A+ L  A+ I    +   L K   +  RF+          I    A 
Sbjct: 261 KLVGRHNYMNALAASALVQAVDISFTAIRTALRKFTGLAHRFQLAYQKDDVRWINDSKAT 320

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S    L     + +   +++ G G   D      +  +             + +   
Sbjct: 321 NVGSTVAAL-TGLYVANKLHLLLGGDGKSADFS---ELATLINQPHIYCYCFGQDGKELA 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++++   +   I      EAIR     L + D++++
Sbjct: 377 ALSVQSQLFDTMEQAI------EAIR---PNLQQGDMVLL 407


>gi|313203972|ref|YP_004042629.1| udp-N-acetylmuramate--L-alanine ligase [Paludibacter
           propionicigenes WB4]
 gi|312443288|gb|ADQ79644.1| UDP-N-acetylmuramate--L-alanine ligase [Paludibacter
           propionicigenes WB4]
          Length = 479

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 118/364 (32%), Gaps = 41/364 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + + GT GK++ ++    +  +S +S          ++F         + + L+   
Sbjct: 130 SKGICIAGTHGKTTTSTIAAHLLYQSQVSC---------NAFLGGIANNYNTNLLLSAES 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +  +   +     S H L               T+   DH+D ++T  A+  +    F
Sbjct: 181 NLVVIEADEYDR---SFHQL--------SPYMAVITSADPDHLDIYETADAFRES-FEHF 228

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTI 293
             L+      ++        ++ K     G ++ +     G     + +  ++ +     
Sbjct: 229 TSLIRPGGALVMRKGIDIVPQLQK-----GVKLYTYSMNDGGDFTAENIRTVNGEIHFDF 283

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    +P +  V N++ A  L    G+    +   +     +  RF  V  +
Sbjct: 284 VTPNDRLSDVRLGVPVQINVENSVAAMALAWLNGVSFDELRTGISSFSGIYRRFNVVYKS 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLAD 411
            +      DYAH  + L+  + +IR +   R I  VF                 AL   D
Sbjct: 344 DK-IVYMDDYAHHPSELKASIASIRNLYPNRKITGVFQPHLYTRTRDFATAFAEALSQLD 402

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+ D  P  E P      + I  ++         K N        +    + DVLV  
Sbjct: 403 ELILLDIYPARELPIEGVDSDLILRDVKLKNKTLCSKEN-----LLPLLKEKELDVLVTF 457

Query: 466 GKGH 469
           G G 
Sbjct: 458 GAGD 461


>gi|51594809|ref|YP_069000.1| UDP-N-acetylmuramate:L-Ala-D-Glu-meso-diaminopime late ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|170025980|ref|YP_001722485.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis YPIII]
 gi|186893818|ref|YP_001870930.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis PB1/+]
 gi|51588091|emb|CAH19697.1| UDP-N-acetylmuramate:L-Ala-D-Glu-meso-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|169752514|gb|ACA70032.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis YPIII]
 gi|186696844|gb|ACC87473.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis PB1/+]
          Length = 461

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 120/363 (33%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDIKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+  +D + K+VM  A         VG  G +   +KV    +  +V 
Sbjct: 207 LV-RLVPGKGKIILPDNDNHLKQVM--AMGCWSEQELVGETGSWF-ARKVSTDASVYEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LD-NNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  +++      I+       I   ++M        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|257082265|ref|ZP_05576626.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol]
 gi|256990295|gb|EEU77597.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol]
          Length = 445

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 97/305 (31%), Gaps = 40/305 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    
Sbjct: 105 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG-DGTGHGEPDADFFAFEACEYRRHF 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+Y                                 TN+  DH DY+++ +  F+A  + 
Sbjct: 164 LAY--------------------------SPDYAIMTNIDFDHPDYYKSIEDVFSA-FQT 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
               + K   A  Y DD Y +++      +   V   G  +   I  + +          
Sbjct: 197 MAHQVKKGIFA--YGDDKYLRQL-----ESEVPVYYYGVSEEDDIQARNIQRTTEGSSFD 249

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +      F+ P  G   + NAL    +     +D   V E +     V  RF     
Sbjct: 250 VYHKDDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKV 309

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     I  DYAH    ++  +    +      II VF                 ALDLA
Sbjct: 310 SDM--IIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLA 367

Query: 411 DIAIV 415
           D   +
Sbjct: 368 DEVFL 372


>gi|325136319|gb|EGC58927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M0579]
          Length = 458

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 118/370 (31%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTVVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   I        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL        +G+      E L     
Sbjct: 265 A----DGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALSTFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT   G  +Y D+AH   ++E  ++ +R       I+              +
Sbjct: 321 VKRRMEIKGT-VNGITVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTM 379

Query: 402 MGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
              +  +L  AD            D     AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPESLKEADQVFC---YAGGVDWN--VAEALAPLGGRLHVGKDFDAFVAEIVKNART 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|325128263|gb|EGC51148.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           N1568]
          Length = 458

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 121/370 (32%), Gaps = 24/370 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFSV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTVVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   I        ++ + +       V   G +  +   +  
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK--GCWTPVEKFGTEHGWQAGEAN 264

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                     + ++GK      + L G     NAL        +G+      E L     
Sbjct: 265 A----DGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNK 458
                ++L  AD            D +   AE +  + G +  G   +A +   ++    
Sbjct: 380 KSALPVSLKEADQVFC---YAGGVDWD--VAEALAPLGGRLNVGKDFDAFVAEIVKNAEV 434

Query: 459 QDVLVVAGKG 468
            D ++V   G
Sbjct: 435 GDHILVMSNG 444


>gi|187732828|ref|YP_001878898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii CDC 3083-94]
 gi|187429820|gb|ACD09094.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           CDC 3083-94]
          Length = 438

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +    S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIARAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|320457842|dbj|BAJ68463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 493

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 118/372 (31%), Gaps = 43/372 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 112 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPQHDV 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 169 L-----------CVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSKV 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F      +   +  A DA   E+   A  A  CR +    +        +       +  
Sbjct: 216 FHN---AKHAIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSG 272

Query: 293 ISVEGKDFDFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +               V +AL A  L + +G D    L+ L   
Sbjct: 273 VAGGAVGEPVRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSF 332

Query: 340 HVVPGRFEFVGTN--SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V       G   +VD +  +N                I +    G  +   
Sbjct: 333 KPGGHRIETVAEAVVEGGSVRFVDDSKATNGHAARASLSSFPAKSVIWI--AGGLAKGSR 390

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAI 453
              ++   A  +    I+  D  P  E       +I   I    +     +R  A+    
Sbjct: 391 FEDLVKDQAHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDR--AVEACG 448

Query: 454 EMLNKQDVLVVA 465
                 D++++A
Sbjct: 449 TYAAAGDIVLMA 460


>gi|301155887|emb|CBW15356.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus parainfluenzae
           T3T1]
          Length = 475

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 157/456 (34%), Gaps = 78/456 (17%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----------FSATI 86
           R  QAG  IF+        GH        QGA  +VVSSA    +               
Sbjct: 58  RLAQAGAKIFI--------GHQ-AENV--QGASVVVVSSAIHEDNPELIAAKQNRIPVIQ 106

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           R+           + L+      +G      +AV GT GK++  + +  I  ++ L    
Sbjct: 107 RA-----------QMLAEIMRFRHG------IAVAGTHGKTTTTAMISMIYTQAKLDPTF 149

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +      S+          +  YL   ++       + +                ++ + 
Sbjct: 150 VNGGLVKSAG---KNAHLGASRYL---IAEADESDASFL---------------HLQPMV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+D ++       A    F   LP    A++ ADDA    +M+     G +
Sbjct: 189 SVVTNIEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDAV---LMELVPQVGRQ 245

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           VL+ G+ +     ++       +   T+    G+  + L  +PG+    NA  A  +   
Sbjct: 246 VLTYGFSEHADYRIEDYEQTGFQGHYTVVCPSGERINVLLNVPGKHNALNATAALAVAKE 305

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT-IT 380
            GI +  +LE L        RF+ +G     +   R+  DY H    +++ +K  R    
Sbjct: 306 EGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVDVTIKAAREGWG 365

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH 434
             RI+++F                  L   D  I+ D     E P      + +   I +
Sbjct: 366 DKRIVMIFQPHRYSRTRDLFDEFVQVLSQVDALIMLDVYAAGEAPIVGADSKALCRSIRN 425

Query: 435 -GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
            G    I   +  E +   ++  +   D+++  G G
Sbjct: 426 LGKVDPILVSD-TEQLGDVLDQIIQDGDLILAQGAG 460


>gi|298245969|ref|ZP_06969775.1| UDP-N-acetylmuramate/alanine ligase [Ktedonobacter racemifer DSM
           44963]
 gi|297553450|gb|EFH87315.1| UDP-N-acetylmuramate/alanine ligase [Ktedonobacter racemifer DSM
           44963]
          Length = 500

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 141/453 (31%), Gaps = 83/453 (18%)

Query: 68  AEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+A+++S A    D      + +    + V   ++ L              +L+V G  G
Sbjct: 63  ADALIISPAVPALDPQNPELLEAQRRGIPVKTWQELLGTLTEGKC------LLSVCGVHG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KSS  S +  +   +G+                D      + +    A   L        
Sbjct: 117 KSSTTSMLSLMLVDAGM----------------DPTCEIGAVVPRFGANYRLGQSEYFVN 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPK 240
             +  +H    +              +  +H ++    + +  A       +      P 
Sbjct: 161 EADEFNHNFWHY-----HPRLAVVNAIEFEHPEFFHNYEEFLYAFEHFVRGMDIASNWPL 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----V 295
               I+  D    +++          +++   Q     L +    H   ++T       +
Sbjct: 216 PPTIIVNIDSPGCRDLCAHLDGWAGSIVNYSIQ----DLSRDTPEHIGDRLTFEAYDVKL 271

Query: 296 EGK-----------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           EG+                 D  +   LPG   V NAL A      +G     +   LE 
Sbjct: 272 EGETCFRVRLRNAPAGVKLPDVLYRLQLPGIHYVQNALAALAAAYTVGAPLESIARTLEG 331

Query: 339 LHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFG 389
                 RFE     +            +  DYAH   ++ + L+  R    G R+I V+ 
Sbjct: 332 FTGARRRFEIRHQGALVVGERTCDDVILVDDYAHHPTAIALTLEAARKRYPGRRLIAVYQ 391

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKG 443
                           A D ADIAI++D  P  E         ++ +EI    P F ++G
Sbjct: 392 PHMYSRTKTFFEQFLQAFDAADIAIISDIFPAREVDTGLVHTRQLVSEIAKR-PRFSQEG 450

Query: 444 NRI-------EAIRTAIEMLNKQDVLVVAGKGH 469
            +I       E  +T    L   D++++ G G 
Sbjct: 451 AQILYGGSVQETTQTIQNNLRSGDIVLIMGAGD 483


>gi|170768370|ref|ZP_02902823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
 gi|170122474|gb|EDS91405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
          Length = 438

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R+++         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRTAKLRIYDN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R ++        +     +A+R     +   D++++
Sbjct: 377 LAALRPDVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|312865978|ref|ZP_07726199.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus downei F0415]
 gi|311098382|gb|EFQ56605.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus downei F0415]
          Length = 443

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 116/358 (32%), Gaps = 46/358 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V G  GK+S    +  + +    +SF IG  +   S                    Y 
Sbjct: 106 LGVAGAHGKTSTTGLLSHVLRNITDTSFLIGDGTGRGSKNS----------------QYF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY  +    F+A     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PAYSIITNVDFDHPDYFTSIDDVFSAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D Y +++   A      +   G++         +    +     +  +
Sbjct: 199 ---QKGLFVYGEDPYLRKITSSAP-----IYYYGFEENDDFVAYDIVRTTHGSDFKVKHD 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   +F  P  G   + NA          G +  LV EHL+  + V  RF     N   
Sbjct: 251 GEVLGNFHVPAFGRHNILNATAVIANLYIAGFNMDLVTEHLKTFNGVKRRFTEKIVND-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                +AL+ AD   
Sbjct: 309 TVIIDDFAHHPTEIVATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFALALNEADSVY 368

Query: 415 VTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL-VVAGKGH 469
           +       R  D  +++   +  +   I+K  R+  +     +L+  + + V  G G 
Sbjct: 369 LAQIYGSARERDNGQVK---VEDLAAKIKKPARVVTVENVSPLLDHDNAVYVFMGAGD 423


>gi|254513897|ref|ZP_05125958.1| mur ligase family protein [gamma proteobacterium NOR5-3]
 gi|219676140|gb|EED32505.1| mur ligase family protein [gamma proteobacterium NOR5-3]
          Length = 566

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 140/404 (34%), Gaps = 42/404 (10%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GK++    +  I + +G  +   G +ST      D  L          A   L  
Sbjct: 178 ITGTNGKTTTVRLLASIARAAGRVA---GVSSTDWLAMGDELLHRDDYAGPGGARIVLRD 234

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLFEEL 237
           Q      +E +  G+ +  L   +      TN+  DH+      T +   + K       
Sbjct: 235 QRCELALLETARGGMLRRGLAVERADVAVITNIAADHLGDFGVETVEDLADVKWS-VSAA 293

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--- 294
           L K+S  ++ A+D     +M+RA  +   +            K   A    +  T+    
Sbjct: 294 LDKKSCLVLNAEDPL---LMRRAPGSPAPLCLFSLSPTAPAFKAHLA-RGGRGFTVRRGR 349

Query: 295 --------VEG----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                   VEG    K     +       + NAL AA +  A+GI+ +++ + L  L   
Sbjct: 350 LERIHAGKVEGFLSVKKMPLSYDGVARHNIANALAAAAVADALGIELSVIAKGLCALGNE 409

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPI 401
                       G    VD+AH    LE ++  I  + + R  ++    G   D+  R  
Sbjct: 410 DNPGRANLYTVGGATFLVDFAHNPAGLEALMPMIEGLPAKRRALITGQAGDRGDEDIRAF 469

Query: 402 MGKIALDLADIAIV--TDDNPRSEDPEKIRAEII-------HGIPGFIEKGNRIEAIRTA 452
               +    D   +   D + R     ++ A +        H           ++A R A
Sbjct: 470 ADASSSIHFDRIWLKRMDGHARGRAEGEVAALMRDAFIAQGHAAKSISLSKTELDATRAA 529

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +  +   D++V+    HE        + +  ++  + + + G I
Sbjct: 530 LRWVKPGDLVVLLS--HE-----KRDKTREFLEARVAKGVTGCI 566


>gi|152990837|ref|YP_001356559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
 gi|151422698|dbj|BAF70202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
          Length = 474

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 132/365 (36%), Gaps = 51/365 (13%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A +        I+AVT + GK+S+ +F+ Q+ + S          +T++   +D     P
Sbjct: 145 ARKKLETIDPTIIAVTASYGKTSIKNFIYQLLKDSYHVYKTPRSVNTLAGIIKDINTALP 204

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               +     Y+   G       A   G        +         +G  HI+Y +T + 
Sbjct: 205 QVCEV-----YVVEAG-------ARERGDILEITKFLNHHYAVVGKVGPQHIEYFKTLEN 252

Query: 226 YFNAKMRLFEELLPKESPAI---IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
               K+ +      K++         DD               + +  G       +K V
Sbjct: 253 IIATKLEILHSKRLKKAFLWDGLPVKDDP--------------KFVKFGSN-----IKNV 293

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            A  +     + ++G+ F F  P+ G F  +N   A  +   +GID A + + + +L  V
Sbjct: 294 KADLDGVSWDLELQGEIFHFQAPILGGFNAFNITAAILVAKELGIDMATLQKRVSQLKGV 353

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             R + +     GG++ +D +   N   +    + ++    GR +VV     + D+    
Sbjct: 354 EHRLQRIEA---GGKVIIDDSFNGNLEGMIASYELVKNY-PGRKVVVTPGIVESDEKSNI 409

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNK 458
            + K   ++ D+AI+T          KI  E++       +    ++ +      +    
Sbjct: 410 ELAKKINEVFDLAIIT---------GKINKEVLQKNITIEKIMVEDKKQLQNLLAKHTKS 460

Query: 459 QDVLV 463
            D+++
Sbjct: 461 GDLIL 465


>gi|78221631|ref|YP_383378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
 gi|122063247|sp|Q39YM1|MURD_GEOMG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78192886|gb|ABB30653.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
          Length = 452

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 139/418 (33%), Gaps = 64/418 (15%)

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRL 109
           ++ D   F        A+ +VVS     +     A  R+   ++            ASR 
Sbjct: 59  DRHDEADFAA------ADVVVVSPGVPQESPYLQAARRAGREVITE-------IELASRF 105

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++A+TGT+GK++  +   +I    G  +F  G                     
Sbjct: 106 VTVP---MVAITGTNGKTTTTTLTGEIFSACGFRTFVGGNIGN----------------- 145

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               L  L   G T   V           +   +       N+  DH+D + T Q Y +A
Sbjct: 146 ---PLIELVEGGETVERVVVEISSFQLEWISSFRPRVAVLLNITEDHLDRYATFQEYIDA 202

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K+R+FE     +  A++  DD     +  R            +             H   
Sbjct: 203 KVRIFENQESTD-YAVLNVDDPIVAGIAGRVAATV-------FPMSQQRELAEGVFHRDG 254

Query: 290 QVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +T   +G++  F    F + G   + N + +    + +G D+   L  +E    +P R 
Sbjct: 255 VITFRHQGREERFPTARFRITGVHNIENIMASLAATLLLGCDAKQALAAVEGFGGLPHRM 314

Query: 347 EFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E V   + G R Y D  A    S+E  L +   IT      +   G D+     P+   +
Sbjct: 315 ELVRELA-GVRYYEDSKATNVGSVEKALASFNDIT------LIAGGKDKGGSYAPLAPLV 367

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              +  + ++       E  E++  E+   +          EA+  A  +     V++
Sbjct: 368 TERVRHMVLI------GEAKERMARELGS-LTDTRMATTLEEAVELAASLTEPGGVVL 418


>gi|320540407|ref|ZP_08040057.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
 gi|320029338|gb|EFW11367.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
          Length = 439

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 146/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L   + +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVVSPGVALATPALSAAADAGVEIVGDVELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V Q+ + +G +    G                        ALS L  +      +
Sbjct: 118 TVTTLVGQMAKAAGWAVGIGGNIGL-------------------PALSLLRQE-CQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTHSLRTAAATMLNVTEDHMDRYPFGLQQYRVAKLRVYEN----AGVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
             DD  +  V         R +S G      HL        + +  + V G+        
Sbjct: 212 NTDDTLTLPV----RGTDARCVSFGVDVGDYHLN-----CQQGETWLRVRGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+ I  A  L+ L     +P RF++V   +    I    A 
Sbjct: 263 KLTGCHNYTNALAALALADAVNIPRASSLKALTTFTGLPHRFQWVWECNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  LK ++    G + ++   G  +     P++  +  D   +     D      
Sbjct: 323 NVGSTEAALKGLQ--VEGMLHLLL-GGDGKSADFSPLVRYLQGDNVRLYCFGRD------ 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ++   +    E     +A+R     +   D++++
Sbjct: 374 -GAQLVQLRPAVATLTETL--EQAMRDIACRVQPGDMVLL 410


>gi|317493603|ref|ZP_07952024.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918546|gb|EFV39884.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 115/362 (31%), Gaps = 36/362 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEECGYEPGFV--IGGVPGNFDVSARMGNSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I  A DA  K+VM     +          G+           +     + 
Sbjct: 209 -RLVPGKGRIISPASDANLKQVMAMGCWSEQE-----LSGEDGTWNARKLNPDASYFEVL 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G    +  + L GE  ++N L+A      +G+  A     L+       R E  G  +
Sbjct: 263 LDGDVVGEVNWGLVGEHNMHNGLMAIAAARHVGVLPADACRALDSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
            G ++Y D+AH   ++   L  +R+   G  RI+ V          G        AL  A
Sbjct: 322 FGVKVYDDFAHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKMGVSKNDLAPALGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAG 466
           D   +         P  I   +       ++  +    I   ++M        D ++V  
Sbjct: 382 DEVFLFQ-------PHHIPWLVTEVAEACVQPAHWSADIDVLVDMIAKTAQPGDYILVMS 434

Query: 467 KG 468
            G
Sbjct: 435 NG 436


>gi|29376436|ref|NP_815590.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis V583]
 gi|255972446|ref|ZP_05423032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1]
 gi|256959228|ref|ZP_05563399.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5]
 gi|256961595|ref|ZP_05565766.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96]
 gi|257084882|ref|ZP_05579243.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1]
 gi|257090198|ref|ZP_05584559.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188]
 gi|257416351|ref|ZP_05593345.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis AR01/DG]
 gi|257419600|ref|ZP_05596594.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11]
 gi|257422294|ref|ZP_05599284.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98]
 gi|300860238|ref|ZP_07106325.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD
           Ef11]
 gi|44888194|sp|Q833N6|MURC_ENTFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29343900|gb|AAO81660.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis V583]
 gi|255963464|gb|EET95940.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1]
 gi|256949724|gb|EEU66356.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5]
 gi|256952091|gb|EEU68723.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96]
 gi|256992912|gb|EEU80214.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1]
 gi|256999010|gb|EEU85530.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188]
 gi|257158179|gb|EEU88139.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ARO1/DG]
 gi|257161428|gb|EEU91388.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11]
 gi|257164118|gb|EEU94078.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98]
 gi|300849277|gb|EFK77027.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD
           Ef11]
          Length = 445

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 97/305 (31%), Gaps = 40/305 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    
Sbjct: 105 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG-DGTGHGEPDADFFAFEACEYRRHF 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+Y                                 TN+  DH DY+++ +  F+A  + 
Sbjct: 164 LAY--------------------------SPDYAIMTNIDFDHPDYYKSIEDVFSA-FQT 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
               + K   A  Y DD Y +++      +   V   G  +   I  + +          
Sbjct: 197 MAHQVKKGIFA--YGDDKYLRQL-----ESEVPVYYYGVSEEDDIQARNIQRTTEGSSFD 249

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +      F+ P  G   + NAL    +     +D   V E +     V  RF     
Sbjct: 250 VYHKDDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKV 309

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     I  DYAH    ++  +    +      II VF                 ALDLA
Sbjct: 310 SDM--IIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLA 367

Query: 411 DIAIV 415
           D   +
Sbjct: 368 DEVFL 372


>gi|298373285|ref|ZP_06983274.1| UDP-N-acetylmuramate--alanine ligase [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274337|gb|EFI15889.1| UDP-N-acetylmuramate--alanine ligase [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 457

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 120/367 (32%), Gaps = 46/367 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            E  L V GT GK++++S +  + ++S          S   +          +   L   
Sbjct: 106 SERGLCVAGTHGKTTISSMIAHLLRQS----------SVDCNAFLGGISLNYNSNLLLSD 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S L         +EA  +    HRL          ++   DH+D + T + Y  A    
Sbjct: 156 RSDLV-------VIEADEYDRSFHRLS---PFMAVVSSTDADHLDIYHTHEGYIEA-FEH 204

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
           F  L+ +    I       S  + +       +  +    +    +   +   + K    
Sbjct: 205 FCGLIKEGGTLIYKKGITLSPHLQR-----NVKTYTYSASENADFYADNIRIGNGKLLFD 259

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             + GK   D    +P    V NA+ A  +    G  +  +   +     V  RFE   +
Sbjct: 260 AVLLGKRIADLDLGVPVLVNVENAIAAIAVAWLNGATADELRAAIASYKGVRRRFEQHLS 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +      DYAH    L   +++++      +++ VF                 AL L 
Sbjct: 320 EPKIY--IDDYAHHPKELASSIRSLKLLYADKKVLGVFQPHLYSRTADFCDEFAQALSLL 377

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVL 462
           D  ++ +  P  E+P      + I   I +       K          +++L  +  DVL
Sbjct: 378 DEIVLVEIYPAREEPIPGVSSQIIFDRITNPNKTLTTKA-------KLLDVLGDKRFDVL 430

Query: 463 VVAGKGH 469
           V  G G 
Sbjct: 431 VTLGAGD 437


>gi|78049108|ref|YP_365283.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037538|emb|CAJ25283.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 452

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 147/415 (35%), Gaps = 34/415 (8%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 49  ALAQGYAPSNISPDATDVVVGNALSRGNAAVEAVLDAGRRYTSGAQWLAEQVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A+D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGREFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G+        ++ A        +    + 
Sbjct: 214 ARGRLIVNGEDAHLAEVL--AMGCWTPVERFGFDASLDWSARLIAADGSAFTVLHRGVEI 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A V+  L +   V  R E +G ++R   +Y
Sbjct: 272 GQVQWPLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVKRRLEVIG-SARAITVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       +VV                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRAKVGAARVVVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 389

Query: 418 DNPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              R E   D   I A++  G    ++  +   A+  A+ E+    D +V    G
Sbjct: 390 --HRPELAWDAAPIIAQV-RGEARVVQDVD---ALLRALGEIARPGDHVVFMSNG 438


>gi|116491164|ref|YP_810708.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oenococcus oeni
           PSU-1]
 gi|122276654|sp|Q04ES9|MURD_OENOB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116091889|gb|ABJ57043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oenococcus oeni
           PSU-1]
          Length = 438

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 115/356 (32%), Gaps = 46/356 (12%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +    +LAVTG++GK++  + + ++ +     +  +     I     +  L+   P  L
Sbjct: 94  DQFKGEVLAVTGSNGKTTTTTLIGKMLKA---DNVDVKVGGNIGIPVSELMLSDSQPRVL 150

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS     G  +                 IK      TNL   HID+H T+  Y  AK
Sbjct: 151 MLELSSFQLLGAQN-----------------IKPKIAVITNLFSSHIDFHHTRGNYLRAK 193

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +  +   K+   ++      SK+  KR+                          +++ 
Sbjct: 194 FSI-TQHQTKDDYLVLNDSSIDSKDFAKRSQADDYYFSPTNTSVNTYVNDGTIYFDDEKI 252

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +S           L GE  + N L A       G+ +  + + L     +  R E VG
Sbjct: 253 IDLS--------KVVLVGEHNLENILAAVTAAKIFGVSNRAIEKVLTSFKGLEHRLEAVG 304

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   +Y D   T   +E   K + +      I +   G DR      ++      ++
Sbjct: 305 V-IKERTVYNDSKAT--DIEATQKALASF--KEPINLIAGGLDRGDDLNRLVPNFKNVVS 359

Query: 411 DIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I      N      E           GI   +      EA+  A E+     VL+
Sbjct: 360 LITYGQTKNKLQSAGE---------KAGIKQTVVVDTLKEAVAKAKELSRPGQVLL 406


>gi|320535924|ref|ZP_08035992.1| UDP-N-acetylmuramate--alanine ligase [Treponema phagedenis F0421]
 gi|320147228|gb|EFW38776.1| UDP-N-acetylmuramate--alanine ligase [Treponema phagedenis F0421]
          Length = 479

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 137/417 (32%), Gaps = 46/417 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S+AY+ ++      +    L   +  K L  F+             + G  GK++  
Sbjct: 77  VIYSAAYTPEENEELHEAFMRSLPTLSYPKALGDFSRH------SYSCGIAGVHGKTTTT 130

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  + +        +   S I++F     +      ++A+   Y       +      
Sbjct: 131 GIVGTLVKAL-DLDASVLAGSMIANFGNSCTMIHGDSFFIAETCEYKKHFLNFYPKKI-- 187

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              T++  DH D++   +    A ++  + L P+ S     ADD
Sbjct: 188 -----------------VLTSVESDHQDFYPQYEDILAAFLQYIDRL-PQFSEIFYCADD 229

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGE 309
             +KE +  A ++   ++ + Y         V     + + +  S++G   +F   +PG 
Sbjct: 230 PGAKEAINLAFSSRPDLIYIPYGESVSSEFGVKIHGVRDEKLYFSLKGFAGEFYLTVPGH 289

Query: 310 FQVYNALVAAGLCIAIGI---------DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             V NA  A  L +++           D  ++ + L        R E VG  ++G     
Sbjct: 290 HNVLNAAAAIALVLSLVKLERKETTINDITIIRKALASFKGAKRRSEIVG-EAKGILFMD 348

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH   +++  LK ++     R I+V F                 A   AD  I+    
Sbjct: 349 DYAHHPTAIKTTLKGLKEFYPNRRIIVDFMSHTYSRTAALLNEFSQAFSSADEIILHKIY 408

Query: 420 PRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             + +         ++                 ++A     + L   D+ +  G G 
Sbjct: 409 ASAREVYHGEVTGRQLFELTKKSCRKTYYYEEVMDAESFLEKELQSGDLFITMGAGD 465


>gi|270263957|ref|ZP_06192225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
 gi|270042150|gb|EFA15246.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
          Length = 439

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + ++ +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPALSAAADAGVEIIGDVELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G +    G                        ALS L  +      +
Sbjct: 118 TVTTLVGEMAKAAGWAVGVGGNIGL-------------------PALSLLRQE-CQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E      +  ++
Sbjct: 158 ELSSFQLE--TTFSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN----AALCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL +      + +  + V G+        
Sbjct: 212 NADDALTMPV----RGADQRCISFGADVGDYHLNR-----QQGETWLRVRGEKILNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+ I  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLTGRHNYTNALAALALADAVNIPRASSLKALTTFTGLAHRFQLAWEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D    E 
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLGRYLQGDNVRLYCFGRD---GEQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A++     +   D++++
Sbjct: 377 LAELRPEVA------TLTDTMEQAMQAIAGRVQPGDMVLL 410


>gi|37523301|ref|NP_926678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gloeobacter
           violaceus PCC 7421]
 gi|62900564|sp|Q7NEZ5|MURD_GLOVI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|35214305|dbj|BAC91673.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gloeobacter
           violaceus PCC 7421]
          Length = 441

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 133/395 (33%), Gaps = 60/395 (15%)

Query: 48  AIVGNKE---DGHLFIPQAIA--QGA------EAIVV------SSAYSLQDFSATIRSNT 90
           A+ G +    DG     +A+    GA      EA++           SL   S  +R + 
Sbjct: 21  ALGGRRVVLWDGRD--SEALRVVAGALAPFGVEAVLGREFVPEEPDLSLVVVSPGVRWDH 78

Query: 91  PILVVDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P LV    R                    L VTGT+GK++  + V  I + +GL +   G
Sbjct: 79  PGLVAARARGVTVTGEVGLAWESLSHRRWLCVTGTNGKTTTTALVGHILKTAGLRAPVCG 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                                  + ++ L  +   +  + A           GI+     
Sbjct: 139 NIG--------------------RPVTDLLLEPEDYDWIVAELSSFQIESAQGIRPEVAV 178

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           +T    DH++ H T + Y   K      LL +   A++  DDAY     +R+        
Sbjct: 179 WTTFTPDHLNRHGTLERYAAIKA----GLLMQARRAVLNGDDAYLG--ARRSAWPDAWWT 232

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           S           K   I N+  + +S           LPG   + N L+A   C   G+ 
Sbjct: 233 STQAPAAVSLAGKDICIENRPVLPVSA--------VRLPGAHNLQNVLMAVAACHLTGVG 284

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A +   +     VP R E VG   RG R   D   T+   +  L  +  + +    V+ 
Sbjct: 285 DAAIASGVASFIGVPHRLEAVG-EYRGVRFINDSKATN--YDAALVGLTAVPAPS--VLI 339

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             G  +     P +  IA   A + ++ +  P  E
Sbjct: 340 AGGQAKTGESGPWLRAIAERCASVVLIGEAAPLFE 374


>gi|227519254|ref|ZP_03949303.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX0104]
 gi|227555538|ref|ZP_03985585.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22]
 gi|229549750|ref|ZP_04438475.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC
           29200]
 gi|293382403|ref|ZP_06628340.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712]
 gi|293388252|ref|ZP_06632768.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613]
 gi|307287939|ref|ZP_07567972.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109]
 gi|312900938|ref|ZP_07760232.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470]
 gi|312902694|ref|ZP_07761898.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635]
 gi|312908370|ref|ZP_07767334.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           512]
 gi|312910557|ref|ZP_07769399.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           516]
 gi|312950943|ref|ZP_07769853.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102]
 gi|227073266|gb|EEI11229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX0104]
 gi|227175343|gb|EEI56315.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22]
 gi|229305019|gb|EEN71015.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC
           29200]
 gi|291080179|gb|EFE17543.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712]
 gi|291082334|gb|EFE19297.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613]
 gi|306501084|gb|EFM70391.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109]
 gi|310625784|gb|EFQ09067.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           512]
 gi|310631092|gb|EFQ14375.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102]
 gi|310633748|gb|EFQ17031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635]
 gi|311289105|gb|EFQ67661.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           516]
 gi|311292037|gb|EFQ70593.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470]
 gi|315036717|gb|EFT48649.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0027]
 gi|315149313|gb|EFT93329.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0012]
 gi|315152214|gb|EFT96230.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0031]
 gi|315157019|gb|EFU01036.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0043]
 gi|315159827|gb|EFU03844.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0312]
 gi|315161519|gb|EFU05536.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0645]
 gi|315163609|gb|EFU07626.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1302]
 gi|315167362|gb|EFU11379.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1341]
 gi|315169555|gb|EFU13572.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1342]
 gi|315574498|gb|EFU86689.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis
           TX0309B]
 gi|315576957|gb|EFU89148.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0630]
 gi|315581840|gb|EFU94031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis
           TX0309A]
 gi|327535426|gb|AEA94260.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           OG1RF]
          Length = 456

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 97/305 (31%), Gaps = 40/305 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    
Sbjct: 116 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG-DGTGHGEPDADFFAFEACEYRRHF 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+Y                                 TN+  DH DY+++ +  F+A  + 
Sbjct: 175 LAY--------------------------SPDYAIMTNIDFDHPDYYKSIEDVFSA-FQT 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
               + K   A  Y DD Y +++      +   V   G  +   I  + +          
Sbjct: 208 MAHQVKKGIFA--YGDDKYLRQL-----ESEVPVYYYGVSEEDDIQARNIQRTTEGSSFD 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +      F+ P  G   + NAL    +     +D   V E +     V  RF     
Sbjct: 261 VYHKDDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKV 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     I  DYAH    ++  +    +      II VF                 ALDLA
Sbjct: 321 SDM--IIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLA 378

Query: 411 DIAIV 415
           D   +
Sbjct: 379 DEVFL 383


>gi|317483069|ref|ZP_07942070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
 gi|291516664|emb|CBK70280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum F8]
 gi|316915475|gb|EFV36896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 481

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 121/372 (32%), Gaps = 43/372 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPQHDV 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 157 L-----------CVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSKV 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F      +   +  A DA   E+   A  A  CR +    +        +       +  
Sbjct: 204 FHN---AKRAIVYNAQDAKVSELAAAAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSG 260

Query: 293 ISVEGKDFDFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +               V +AL A  L + +G D    L+ L   
Sbjct: 261 VAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSF 320

Query: 340 HVVPGRFEFVGTNS-RGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V   +  GG + +VD +  +N                I +    G  +   
Sbjct: 321 KPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLSSFPAKSVIWI--AGGLAKGSR 378

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAI 453
              ++   A  +    I+  D  P  E       +I   I    +     +R  A+    
Sbjct: 379 FEDLVKDQAHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDR--AVEACG 436

Query: 454 EMLNKQDVLVVA 465
                 D++++A
Sbjct: 437 TYAAAGDIVLMA 448


>gi|225174291|ref|ZP_03728290.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225170076|gb|EEG78871.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 465

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 150/423 (35%), Gaps = 42/423 (9%)

Query: 1   MK---LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK   L++++     E+I   S       E +I +V + S  ++ G +F     + + G 
Sbjct: 1   MKALPLKEILAVIDGEVIAGSS-------EFEIIDVKTSSPGLRNGTLFF----HTKKGL 49

Query: 58  LFIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             I Q     +   AIV      L      +  N  ++ VDN+   L+ F S   G    
Sbjct: 50  T-IDQNFNRYKKRVAIVTDKKIDLD----QLNDNVTLITVDNSVNALASFTSYYRGLFTI 104

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TGT+GK++    +  I +                +     +      + L   L 
Sbjct: 105 PVVGITGTAGKTTTKEMLAHILR-------------GEQNVQCTYKSMNGIVLNLKYLLG 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V    +  S  G  +      K   G  TN+G  H++  +T + Y  AK  + E
Sbjct: 152 INEDTDVAVFEMGVSYPGNIRKSGAVFKPSIGMITNIGTAHLETCKTLERYIGAKGEMLE 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
            L  K    ++ +DD   K++    H    +V   G + +    + ++     K    + 
Sbjct: 212 ALDYK-GQLLLNSDDENIKKI--DLHPFKGQVYYFGQKSECAYRISQIEYAAEKMVFQLH 268

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V+G        P  GE  VYNA  A       G+D +  +E +        R   V    
Sbjct: 269 VKGHSSKRVYVPGLGEQCVYNAAAAIAAAHLTGMDLSSCIERIGSFKQ-MERHVSVERGL 327

Query: 354 RGGRIYVD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLAD 411
               I  D +    +S    LK ++ I   +  + VFG        +     K+   + +
Sbjct: 328 NRATIIDDTWNSNPSSAYAALKVLQKIAENKKSVAVFGKLQRLGAKQHEEHVKLGARMKE 387

Query: 412 IAI 414
           + I
Sbjct: 388 LGI 390


>gi|159900082|ref|YP_001546329.1| Mur ligase middle domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893121|gb|ABX06201.1| Mur ligase middle domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 538

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 128/377 (33%), Gaps = 37/377 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A++GT+GK++    +    + +G   +Q G T T   +  +  +          A  
Sbjct: 149 PIIAISGTNGKTTTTRLIDFSLRTAG---YQTGRTDTDGVWINNQAIEQGDWTGFGGAQR 205

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRL 233
            LS   V    +E +  GL +  L          TN+  DH+      T     + K  +
Sbjct: 206 VLSHPAVEVAVLETARGGLLRRGLAFNHCEIAVLTNVADDHLPDRGLATVAEMAHFKATI 265

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG------KFIHLKKVCAIHN 287
                  +   I+ ADD    EV+  A  A   ++    Q       +    ++ C   +
Sbjct: 266 VRA---AQKAVILNADDPVLVEVV--APQATAPIIWFSLQATNPLIVQAQQNQQACLYLD 320

Query: 288 KQQVTISVEGK--------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
             Q+ ++  G+        +    F    +  + NAL AA    A G+ +  +   L   
Sbjct: 321 ANQLILASAGQTQALIAVAELPLSFGGVAQHNIANALAAAAALFAFGLSAGQIALGLAGF 380

Query: 340 HVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRD 395
                            G  + +DYAH S+ L ++L +   +   +  I +VF   GDR 
Sbjct: 381 QPNAEHNPGRLNQFQRDGITLLIDYAHNSDGLRVLLASAAPLRAANRHIAMVFSGTGDRT 440

Query: 396 QGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGI--PGFIEKGNRI 446
             +      I     D  I+  D        P   +P  I A    G+      E     
Sbjct: 441 DQQIQEQMTIIAQHVDRLILKRDPWFLRGREPGVLEPLMIAAATAAGLDPAAIAELEGDE 500

Query: 447 EAIRTAIEMLNKQDVLV 463
            A     +     DVL+
Sbjct: 501 AAFNELTQPAKAGDVLI 517


>gi|242237993|ref|YP_002986174.1| UDP-N-acetylmuramate [Dickeya dadantii Ech703]
 gi|242130050|gb|ACS84352.1| UDP-N-acetylmuramate [Dickeya dadantii Ech703]
          Length = 460

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 74/361 (20%), Positives = 126/361 (34%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEACGYQPGFV--IGGVPGNFTVSARLGQSPFFVVEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +           S                   NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYS------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P     II A+D + K+VM            VG +G     KKV +  +  QV + 
Sbjct: 209 -RLVPGSGRIIIPANDLHLKQVMTM--GCWSEQELVGEEG-IWKAKKVASDASVFQVYLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E    +  + L GE  ++N L+A      +G+      + L +      R E  GT + 
Sbjct: 265 NE-LVGEVSWKLVGEHNMHNGLMAIAAARHVGVMPGDACQTLGEFINAHRRLELRGT-AD 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R+   G  RI+ V     +  +          AL  AD
Sbjct: 323 GVSVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGHCKNELAPALGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++  +    + T ++M        D ++V   
Sbjct: 383 GVFLFQ-------PQHIPWQVAEVADACVQPAHWSADVDTLVDMIVKTAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|145297483|ref|YP_001140324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850255|gb|ABO88576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 427

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 138/399 (34%), Gaps = 56/399 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV S   +L        +   + +V +   F+              ++A+TG++GKS
Sbjct: 58  AHMIVASPGIALATPELKAAAEFGVSIVGDIELFVRE--------TQVPVIAITGSNGKS 109

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +GL     G   T +                      L  Q +    +
Sbjct: 110 TVTTLVGEMIAEAGLKVGVGGNIGTPA--------------------LELLKQPMDLCVL 149

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A    NL  DH+D +Q    Y  AKM + +         ++ 
Sbjct: 150 ELSSFQLE--TTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQH----SKHILVN 203

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DDA ++       + G    S G      +    C +  +  +T+  E         + 
Sbjct: 204 RDDAQTQ------PDVGQVWQSFGL---DCNGYGRCLLDGRHWLTLHGEPLLPVDEMKIV 254

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  LC A+GI     L  L +   +P R  FV   +    I    A    
Sbjct: 255 GAHNQANALAAMALCDAVGIPREPQLAVLRRFEGLPHRARFVREVNGVRWINDSKATNVG 314

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +  +R    GR+ ++   G  + Q   P+   +   +  +     D         
Sbjct: 315 ATLAAVAGVREAVKGRL-LLLAGGQGKGQDFGPVQALLGHQIDHMYCFGQD--------- 364

Query: 428 IRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVA 465
             A+I+  +    E+ +    A+  A       D +++A
Sbjct: 365 --ADILLALGEQTERVSDLDAAVAKAAADARPGDWVLLA 401


>gi|65321239|ref|ZP_00394198.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus
           anthracis str. A2012]
          Length = 323

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 104/266 (39%), Gaps = 19/266 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I ADDA    +  
Sbjct: 49  VELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQT-ENDYSVINADDADVMALSA 107

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            +      + S   + +     K  A++ K +  + V+         LPG+  + N L A
Sbjct: 108 YSKGQKV-LFSTTKEIEDGACIKDNALYFKAEKVVEVDD------IVLPGQHNLENILAA 160

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G+ +  +   L++   V  R E+V T +   + Y D   T+  +    K +  
Sbjct: 161 MSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN--MLATEKALSA 217

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            T     V+   G DR      ++       A   IVT        P+ +RA    G+  
Sbjct: 218 FTQPT--VLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKLVRAAEKAGLDT 269

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   EA+  A       DV+++
Sbjct: 270 IESVDTLDEAVVKAYAHSTDGDVILL 295


>gi|269101758|ref|ZP_06154455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161656|gb|EEZ40152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 447

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 139/397 (35%), Gaps = 55/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        +   + +V +   F             + ++A+TG++GKS
Sbjct: 69  ADLIVASPGIALATPELVTAAQAGVEIVGDIELFAREV--------TKPVVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G+     G                        AL  L+     +  +
Sbjct: 121 TVTSLVGEMAKEAGIDVGVGGNIG-------------------FAALDMLAQNHELY-VL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L A  + NL  DH+D +Q  + Y  AKMR+F       + A+  
Sbjct: 161 ELSSFQLE--TTSSLHLAAAVYLNLSEDHMDRYQGLEDYSQAKMRIF----HHANLAVYN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D     +  +  +    + S G+  +   L     I +++ + I+ +         L 
Sbjct: 215 RND-----LATKPTDFTGAMTSFGFDDQDYGL---VLIDDREWLAINQQPLMPADEIALV 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N+L A  L  A GID       L +   +  R +   T      +    A    
Sbjct: 267 GRHNVANSLAALALADAAGIDREAACRALRRYTGLAHRCQLAVTKHGVRWVNDSKATNVA 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L N   +     ++V G G   D     +   +A     +     D         
Sbjct: 327 STEAAL-NGLNLAGKLHLLVGGDGKGADFS--ELKTVLADLNVQLYCFGRD-------GY 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AE+   +   I      +A+  A       D++++
Sbjct: 377 QFAEL---VDNAILVETMAQAMELAASTAQSGDMILL 410


>gi|324112499|gb|EGC06476.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia
           fergusonii B253]
          Length = 438

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALI--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLAHYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|300721516|ref|YP_003710791.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297628008|emb|CBJ88557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 456

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 117/366 (31%), Gaps = 31/366 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  + +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWVLEACGYKPGFL--IGGVPGNFAVSAQIGESPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+           S                   NL  DH D  +   +       
Sbjct: 159 ADEYDSAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFENLASIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P     I+  +D   K V+     +    L     G     KK+    +  QV 
Sbjct: 207 LV-RVVPSTGKIIVPDNDINLKHVLSMGCWSEQEQLG---DGGSWQAKKLSQDSSNYQV- 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  + L GE  ++N L+A      IGI  A   + L +      R E  G  
Sbjct: 262 FHHGEWVGEVNWSLVGEHNMHNGLMAIAAAHHIGIQPADACQALGEFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
             G  +Y D+AH   ++   L+ +R+   G   I+                  IA  +  
Sbjct: 321 VNGISVYDDFAHHPTAILATLEALRSKVGGVARILAVLEPRSNTMKMGMSKSDIAPSMGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG- 468
           AD   +    P +  P ++       +       +    +R  +E     D ++V   G 
Sbjct: 381 ADEVFLYQ--PVN-MPWQVVEIAEQCVQPARWSADIDTLVRMIVETAQPGDHILVMSNGG 437

Query: 469 ----HE 470
               HE
Sbjct: 438 FDGIHE 443


>gi|229514032|ref|ZP_04403494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
 gi|229349213|gb|EEO14170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
          Length = 467

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 96  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 147

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 148 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 188 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 241

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 242 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 296 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 354 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 404

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 405 --HQFMPLHPSARFYDSMESIIRSIRTQLKSGDMVLL 439


>gi|332283263|ref|YP_004415174.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
 gi|330427216|gb|AEC18550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
          Length = 509

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 143/425 (33%), Gaps = 58/425 (13%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           V+     F    A      +   +LA+TGT+GK++V +  +Q+ Q SG ++   G  S  
Sbjct: 109 VIGEIELFARALADMADQGYQPKVLAITGTNGKTTVTAMTRQLVQASGHTAKVAGNIS-- 166

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                            A + +  +        +E SS  L+  R   +   A    N+ 
Sbjct: 167 ------------PAALTALSDALAADDLPEVWVLELSSFQLESVRT--LSPDAAVVLNVT 212

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +DH+D+H + QAY  AK RL    L     AI+  DD     +         R       
Sbjct: 213 QDHLDWHGSMQAYAAAKARL----LGMSRVAIVNRDDPLVMAMADDVKALAVRSFGRDMP 268

Query: 274 -------------------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----- 309
                               +        A   +++  ++ +  +      +P +     
Sbjct: 269 VYEGDLGLERSNDMLWLAAAEANDFDLPAAPARRKKAAVAPQRPEGRPARLIPADALRVR 328

Query: 310 --FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 NAL A GL  ++G+  A +L  L        R EFV   +    I         
Sbjct: 329 GQHNALNALAALGLARSLGLGWAAMLHALRDYAGEAHRTEFVRAVAGVDFINDSKGTNVG 388

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  +     G  +V+   G  + Q   P+   +      + ++       +D   
Sbjct: 389 ATVAALDGM-----GAPVVLIAGGLAKGQDFSPLAAAVRAHARAVVLI------GQDAGL 437

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           I   +           +  +A+  +IE+    D ++++     ++ +  N   + S   D
Sbjct: 438 IGQALAETGVPVEHAVDLGQAVARSIELAQPGDTVLLS-PACASMDMFRNYGHRGSSFVD 496

Query: 488 IIREI 492
            ++E+
Sbjct: 497 EVQEL 501


>gi|289809140|ref|ZP_06539769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 98

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNK 458
           MG IA + ADI +VTDDNPR+E+P  I  +I+ G+    +      R EA+  AI     
Sbjct: 1   MGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKD 60

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            DV+++AGKGHE   IV       S D      +LG+I
Sbjct: 61  NDVVLIAGKGHEDYQIVGTQRLDYS-DRVTAARLLGVI 97


>gi|73662332|ref|YP_301113.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|109892744|sp|Q49YH1|MURC_STAS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72494847|dbj|BAE18168.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 437

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 124/358 (34%), Gaps = 48/358 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  +      +SF IG  + +   A D                Y 
Sbjct: 104 VAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGLGIPASD----------------YF 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +   +     S H                 TN+  DH DY +     FNA    F+E+
Sbjct: 148 AFEACEYRRHFLSYH-----------PDYAIMTNIDFDHPDYFKDVDDVFNA----FQEM 192

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
                 AII + DD + +++      A   V   G+  K   +   +       +  +  
Sbjct: 193 AHNVKKAIIAWGDDTHLRKI-----EADVPVYYYGFSNKDDVYADNLEISEKGTKFDVYF 247

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+ FD FL P  G+  + NAL    +     ++   + E LE    V  RF      ++
Sbjct: 248 KGEYFDTFLSPQFGDHNILNALSVITISYLESLNIDNIKEALETFGGVKRRFNETKVGNQ 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   ++  R    +  +I VF                  L LAD  
Sbjct: 308 --VLVDDYAHHPREISATIETARKKYPNKDVIAVFQPHTFSRTQAFLGEFAECLSLADKT 365

Query: 414 IVTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + +      E+   +   +++  I G        E++    +  +   V++  G G 
Sbjct: 366 FLCEIFGSIRENSGNLTIQDLVQRIDGATLID--EESVNALEQYSDA--VILFMGAGD 419


>gi|75765115|ref|ZP_00744396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74487397|gb|EAO51332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 337

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 104/266 (39%), Gaps = 19/266 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++  +    +F NL   H+DYH T++ Y  AK  +F+    +   ++I ADDA   E+  
Sbjct: 63  VESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQT-ENDYSVINADDADVMELSA 121

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   + S   + +     K  A++ K +  + V          LPG+  + N L A
Sbjct: 122 DTKGQKI-LFSTTKEIEDGACIKDNALYFKGEKVVEVSD------IVLPGQHNLENILAA 174

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G  +  +   L++   V  R E+V T +   + Y D   T+  +    K +  
Sbjct: 175 MSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINN-RKFYNDSKATN--MLATEKALSA 231

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            T    IV+   G DR      ++       A   IVT        P+ +RA    G+  
Sbjct: 232 FTQP--IVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKLVRAAEKAGLDI 283

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   EA+  A     + DV+++
Sbjct: 284 IESVDTLDEAVVKAYAHSKEDDVVLL 309


>gi|157373549|ref|YP_001472149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315923|gb|ABV35021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
          Length = 443

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 142/397 (35%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I+VS   ++         +  I V+ +      LFA  +  +    ++ +TG++GKS
Sbjct: 67  ATQIIVSPGIAIDTPEIRAAIDMDIEVIGDVE----LFARAVKER-DACVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                         +  L    +    +
Sbjct: 122 TVTTLVAEMAKAAGINYAVGGNIGI--------------------PVLDLLQSDIELYVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I+ +  N+  DH+D +   +AY  AK+RL+ +       A+  
Sbjct: 162 ELSSFQLE--TTHSLNCISATCLNISEDHMDRYSDIEAYRQAKLRLYSQ----TRFALFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D    E+ K           +              I +     IS++         L 
Sbjct: 216 RED----ELTKPKDPMNQNSFGLSLPDNDEWGVCEGKIVHGSVEVISLQD------VALV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  L    GI+ A ++E       +  RFE V   +R G  Y++ +  +N
Sbjct: 266 GSHNHANLIAAMALAYQAGIEKAAMVEVASSFTGLEHRFEMVV--NRNGVAYINDSKATN 323

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   +  I  I+     ++   GGD        +  +   ++ +  +  D         
Sbjct: 324 -VGATVAAIEGISEHLGDIILIAGGDGKGADFKPLVPVLKAVSHLITLGKDG-------- 374

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +I       I   +  +A+  A ++    D++++
Sbjct: 375 --DKIAALSDSSIRVDSMADAVNKAAQLAIAGDIVLL 409


>gi|157368712|ref|YP_001476701.1| UDP-N-acetylmuramate [Serratia proteamaculans 568]
 gi|157320476|gb|ABV39573.1| UDP-N-acetylmuramate [Serratia proteamaculans 568]
          Length = 459

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 117/358 (32%), Gaps = 28/358 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYQPGFV--IGGVPGNFDVSARLGGSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +           S                   NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYS------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+  +D++ K+VM  A         VG +G +   K      +     + 
Sbjct: 209 -RLVPGKGKIILPDNDSHLKQVM--AMGCWSEQELVGEEGAWRAQK---LTPDASHYAVF 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + G+   +  + L GE  ++N L+A      +G+        L        R E  G  +
Sbjct: 263 LNGEQVGEVKWSLVGEHNMHNGLMAIAATRHVGVLPEDACRALGDFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
            G  +Y D+AH   ++   L  +R+   G  RI+ V          G        +L  A
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGISKNDLAPSLGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D   +   +     P ++       +       +    +   ++     D ++V   G
Sbjct: 382 DEVFLFQPH---HIPWQVAEVAEACVQPAHWSADLDTLVDMIVKTAQPGDHILVMSNG 436


>gi|237785341|ref|YP_002906046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758253|gb|ACR17503.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 489

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 82/418 (19%), Positives = 140/418 (33%), Gaps = 56/418 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV S  +              I V+ +            +G+ P   LAVTGT+GK+
Sbjct: 76  ASLIVTSPGWRPDTPLLRDAQEQGIPVIGDVELAWCADRDGRFGE-PRTWLAVTGTNGKT 134

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +   SG ++  +G                          +   +  V+ +  
Sbjct: 135 TATSMLASMMVESGAAAEAVGNIGVAVGT------------------ALTQTPRVSVMVA 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L  H    +   AG   NL  DHID+H +  AY   K R++       S  ++ 
Sbjct: 177 ELSSFQL--HWSPTLTPDAGVVLNLAEDHIDWHGSMDAYAADKARVYRG-----SVIVVN 229

Query: 248 ADDAYSKEVMKR------------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           ADD       +R                     ++G  G          I ++  V    
Sbjct: 230 ADDERVCREAERYMELSSTSSSGDTPARRVIEFTMGEPGAGQVGVIDGRIVDRACVPAHS 289

Query: 296 EGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           EG D         PG   V +AL A  +  + G++   ++  L    V   R + V    
Sbjct: 290 EGVDIADATRISPPGPAGVADALAATAIARSQGVEPDAIVRALSSFVVEKHRGQVVYEAG 349

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADI 412
               I    A   ++ +  L  + +        V+  GG  +      ++ K A  ++  
Sbjct: 350 DIRWIDNSKATNPHATDAALSAVES-------CVWIAGGQLKGAQIDDLIHKNADRISAA 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGN----RIEAIRTAIEMLNKQDVLVVA 465
            ++  D    E   +  A I   IP   I   +      EA++ A  +    D +++A
Sbjct: 403 VVLGQD---REIIRQSLATIHPRIPLTVITSTDPVIAMNEAVQAASRLAQPGDTVLLA 457


>gi|237747018|ref|ZP_04577498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
 gi|229378369|gb|EEO28460.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
          Length = 498

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 148/393 (37%), Gaps = 65/393 (16%)

Query: 104 LFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           +FA  L G     ++  N++AVTGT+GK++V S    +C+R+G +    G          
Sbjct: 103 MFAQALKGLEKERQYRPNVIAVTGTNGKTTVTSLTGHMCRRAGKTVRLAGNI-------- 154

Query: 159 DNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                  SP  L   L  +   Q      +E SS  L       ++    +  NL +DH+
Sbjct: 155 -------SPAALDVLLDVIRKDQLPEIWVLELSSFQL--FTTYSLEADTATVLNLTQDHL 205

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-- 275
           D+H + +AY  AK R+F E    ++  ++   D    ++      +   V+S G      
Sbjct: 206 DWHGSMEAYGAAKERIFGE----KTVRVLNRGDETVMQM----RTSQAPVVSFGTDEPSE 257

Query: 276 --------FIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPG-------EFQVYNA 315
                      ++ +  +  +++  +         +++     +P             NA
Sbjct: 258 PGSYGLHLDRDIEWLSVMSPREEEALRKNRKNAVQQEYRIQNLMPAGALRIRGRHNASNA 317

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  LC AIG+  A +L+ L +    P R E V         Y+D +  +N    +   
Sbjct: 318 LAALALCRAIGLPFAPLLQALREYPGEPHRVELVAIVKD--VAYIDDSKGTNVGATVAAV 375

Query: 376 I----RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                      R I++   G  ++Q   P+   ++  +  + ++       +D   I   
Sbjct: 376 KGLGESEAREERRIILIAGGLGKEQDFSPLSHVVSRYVKAVLLI------GKDAHLIHDA 429

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       I   +  +A+    E+  K D++++
Sbjct: 430 LSSAGVEQIYCDSLEQAVLRGSEIARKNDIVLL 462


>gi|229829365|ref|ZP_04455434.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
 gi|229792528|gb|EEP28642.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
          Length = 451

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 101/286 (35%), Gaps = 32/286 (11%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   ++    +  +  N+  DH++ H T + Y   K R+ E     E+   + 
Sbjct: 160 EVSSFQLE--TIETFHPLVSAILNITPDHLNRHHTMENYIACKERITENQTADETVV-LN 216

Query: 248 ADDAYSKEVMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            +D   +E  K   N          L  GY  +            +++  +SV       
Sbjct: 217 LEDPILREFGKTLPNHVVWFSGKRRLKKGYYYREEDRSIRYCQGQEEEFILSVR------ 270

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G     NA+ A  +  A+G+    + E L     V  R E+V T  RG R Y D 
Sbjct: 271 ELQVVGRHNYENAMAAIAISRAMGVPMDKIKEGLRAFTAVEHRIEYVCTK-RGVRYYNDS 329

Query: 363 -AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
                ++    ++ + + T      + G G D+       +      +  + ++      
Sbjct: 330 KGTNPDAAIKGIEAMDSPT-----CLIGGGYDKKSDFGDWIDAFKGKVKLLVLI------ 378

Query: 422 SEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E   +I     +  HG   F+      EA++       + D +++
Sbjct: 379 GETRAQIAKCCQD--HGFNDFVYADTLEEAVKICYTKAKEGDEVLL 422


>gi|213691748|ref|YP_002322334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|254766039|sp|B7GQ76|MURD_BIFLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|213523209|gb|ACJ51956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 481

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 118/372 (31%), Gaps = 43/372 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPQHDV 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 157 L-----------CVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSKV 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F      +   +  A DA   E+   A  A  CR +    +        +       +  
Sbjct: 204 FHN---AKHAIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSG 260

Query: 293 ISVEGKDFDFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +               V +AL A  L + +G D    L+ L   
Sbjct: 261 VAGGAVGEPVRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSF 320

Query: 340 HVVPGRFEFVGTN--SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V       G   +VD +  +N                I +    G  +   
Sbjct: 321 KPGGHRIETVAEAVVEGGSVRFVDDSKATNGHAARASLSSFPAKSVIWI--AGGLAKGSR 378

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAI 453
              ++   A  +    I+  D  P  E       +I   I    +     +R  A+    
Sbjct: 379 FEDLVKDQAHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDR--AVEACG 436

Query: 454 EMLNKQDVLVVA 465
                 D++++A
Sbjct: 437 TYAAAGDIVLMA 448


>gi|33862300|ref|NP_893860.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9313]
 gi|44888177|sp|Q7V9C3|MURC_PROMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33640413|emb|CAE20202.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 488

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 93/288 (32%), Gaps = 32/288 (11%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G  TNL  DH D++       N   R  +         +   D    KE       
Sbjct: 189 QATLGVITNLELDHTDHYANLDELINTMKRFGQGC----RRLLANFDCPILKEHFDATAW 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
              +  +    G       +C   ++    I  +GK       P+PG   + NA+ A   
Sbjct: 245 WSVKTSA----GVDFAALPICLNGDQTIADIYEQGKRMGQITLPMPGLHNLSNAMAAIAA 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379
           C   G+    V + L  L     RF+F GT   G +I  DYAH  + +   L   R I  
Sbjct: 301 CRLEGLSFEDVQQGLADLQPPGRRFDFRGTWE-GRQIVDDYAHHPSEVSATLTMARLIVT 359

Query: 380 --------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                      RI+ VF         K       AL  AD  ++       E+P  I+  
Sbjct: 360 SGRSQLPNPPKRILAVFQPHRYSRTNKFLYDFARALGEADAVLLAPVYSAGENP--IQGA 417

Query: 432 IIHGIPGFIEK--GNRIEAIRT--------AIEMLNKQDVLVVAGKGH 469
               +   I     N   A+            +   K D+++  G G+
Sbjct: 418 TSESLAKAIRIQHPNLPVAVAENFNQLTLLVQKHSLKGDLVLAMGAGN 465


>gi|294620347|ref|ZP_06699659.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679]
 gi|291593418|gb|EFF24980.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679]
          Length = 427

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 121/363 (33%), Gaps = 57/363 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG+ GK+S    +  +      +S+ IG   T     Q    +  +  Y    L+Y 
Sbjct: 91  IAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-DGTGHGDPQAEFFSFEACEYRRHFLAY- 148

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+ +    F A   +  ++
Sbjct: 149 -------------------------SPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQV 183

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
              +     Y DDAY +++      A   +   G  +   I  + +    +     +   
Sbjct: 184 ---KKAIFAYGDDAYLRKL-----KANVPIYYYGVTENDDIQARNIERTTSGSAFDV-YH 234

Query: 297 GKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G +F   F  P  G+  + NAL    +     +D   V E +     V  RF        
Sbjct: 235 GDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVKRRFSEKIVADM 294

Query: 355 GGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    ++  +    +      II VF                 ALDLAD  
Sbjct: 295 --TVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKV 352

Query: 414 IVTDD--NPRSE----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
            + D   + R E      E + A+I  G  G + K N +        +L+  D +V+  G
Sbjct: 353 YLCDIFGSAREEQGNVKIEDLGAKIKKG--GEVIKENNVS------PLLDYHDAVVIFMG 404

Query: 467 KGH 469
            G 
Sbjct: 405 AGD 407


>gi|189423741|ref|YP_001950918.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
 gi|226711913|sp|B3E3Y4|MURD_GEOLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189420000|gb|ACD94398.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
          Length = 446

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 150/417 (35%), Gaps = 62/417 (14%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
             D   F        A+ +VVS     +       +   + VV          ASR    
Sbjct: 60  HHDEADFTA------ADLVVVSPGVPQEHPLLRKTTEAGVAVVSEI-----ELASRFI-- 106

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++A+TGT+GK++  +   ++ + +G S++  G                        
Sbjct: 107 -TAPLVAITGTNGKTTTTTLAGELFRANGFSTYVGGNIG--------------------D 145

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  L + G       A         +   +    +  N+  DH+D + + QAY NAK+R
Sbjct: 146 PLIDLPASGEPVERAVAEISSFQLEWISSFRPKVAALLNITEDHLDRYPSYQAYINAKLR 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHN 287
           +FE     +  A++  DD     V + A +   ++          +G F    ++   H+
Sbjct: 206 IFENQT-ADDFAVVNRDDEL---VWQAAQSLKAQLFPFSRRHELTEGIFSREGELLFRHH 261

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q+++I   G      F L G   + N + A   C+ +G      LE L +   +  R E
Sbjct: 262 GQELSIPTAG------FRLQGVHNLENIMAALACCLLLGCQRETSLELLNRFEALHHRME 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +         A    S+   L++   IT      +   G D+     P+   +  
Sbjct: 316 FVREVADVRYFEDSKATNVGSVAKALESFENIT------LIAGGKDKGGSYAPLAELVQQ 369

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++       E  E+++ E+   +    +     EA++ + ++     V+++
Sbjct: 370 RVRHLVLI------GEAAERMQQELGD-LTATHKAATLEEAVQLSADLTAPGGVVLL 419


>gi|222149138|ref|YP_002550095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           vitis S4]
 gi|221736123|gb|ACM37086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Agrobacterium
           vitis S4]
          Length = 471

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 80/353 (22%), Positives = 124/353 (35%), Gaps = 52/353 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-------LSLFASRLYGKHPE-NIL 118
           G  A V+S    L           P   VD  R         + LF      K P+   +
Sbjct: 65  GLSAFVLSPGVPLTHPK-------PHWTVDLARAAGVEIIGDIELFVRERQAKAPDCPFI 117

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GKS+  + +  I + +G      G   T                     L+   
Sbjct: 118 AITGTNGKSTTTALIGHILRHNGYDVQIGGNIGT-------------------AVLTLEP 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                +  VE SS+ +D     GI   AG   NL  DH+D H + + Y   K RL     
Sbjct: 159 PAPDRYYVVECSSYQIDLA--PGIDPTAGILLNLTPDHLDRHGSMENYAAVKERLVSG-- 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTI 293
                AII  DD Y  E+ KR   AG  V+ +        G +   +++          I
Sbjct: 215 --SDVAIIGVDDDYCLEIAKRLEEAGKEVVRISKGQPLTDGLYNDGQRIVRGSGGAAEVI 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    D + +  L G     NA  A   C+A+G+    +   L     +  R + VG   
Sbjct: 273 A----DLNGIATLRGSHNAQNAAAAIAACMAVGLSKDQIQAGLSSFAGLKHRMQPVG--R 326

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           RG  ++V+ +  +N+ E     + +      I              P+  +IA
Sbjct: 327 RGHVVFVNDSKATNA-EASAPALSSYERIYWIAGGLPKQGGIASLSPLFPRIA 378


>gi|315181132|gb|ADT88046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           NCTC 11218]
          Length = 439

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 139/400 (34%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L            I VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLIVANPGIALATPEIQQALAANIPVVGDI-----ELFAWHVDKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+++   G     +                      L +Q      +
Sbjct: 121 TVTDLTGVMANAAGIATAVGGNIGVPA--------------------LDLLAQPAELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + + A +F NL  DH+D +     Y  AK+R+FE        A++ 
Sbjct: 161 ELSSFQLE--TTSSLAVTAAAFLNLSEDHMDRYDGMTGYRQAKLRIFEH----AQTAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FP 305
           ADD  +            R +  G +      +   A H+ ++V +   G+         
Sbjct: 215 ADDTQT-----YPDAYSGRTVRFGLE---QSAEFTTAQHDGKEVLL-ANGEVVLPTSDLS 265

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   V N L    L  A G++    L  L+    +  R + V  N +G +   D   T
Sbjct: 266 LVGRHNVANVLTVLALLDAAGVNYTNTLPALKSYTGLTHRCQVVADN-QGIKWVNDSKAT 324

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +  +   L  +  +T    + +   G  +     P+   +      +     D       
Sbjct: 325 N--VASTLAALSGLTLNGTLYLLVGGVGKGADFTPLKPVLETLPLTLCCFGRD------- 375

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
                +    +    ++ + +EAI  +I   L   D++++
Sbjct: 376 ----GDQFMPLHASAQRFDTMEAIIASIRPQLKAGDMVLL 411


>gi|187251915|ref|YP_001876397.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
 gi|226711909|sp|B2KEW4|MURD_ELUMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|186972075|gb|ACC99060.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
          Length = 452

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 115/291 (39%), Gaps = 18/291 (6%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ + S+   H  +               K  A +  N+  DHID+H + + Y +AK ++
Sbjct: 153 LAEVMSEIKQHDLIVMEVSSYQLEDSSYFKPYAATILNITPDHIDHHGSFKKYLDAKSKI 212

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+    K+   I  AD    K  +K A N   ++           L+++ +        +
Sbjct: 213 FKFQTQKDIAVINSAD----KNCLKAAKNIKSKLYGF----ATTPLQQIRSHVFYDGDEL 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +      LPG   V NA+ A+ L +A G+DS  + +   K   V  R E +G   
Sbjct: 265 VFSAGERISPPKLPGIHNVENAMAASLLALAAGVDSQSIQQAFNKFKTVEHRIELLGIK- 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +G     D   T+  ++  +  +R++  G+   +   G D+      ++  +      + 
Sbjct: 324 KGISFINDSKATN--IDSTIIALRSMPDGKKTWLILGGQDKGSPYGVLLPLLETKCKKVL 381

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +V       +   KI+ ++  G   F   G   +A+  A     K+D++++
Sbjct: 382 LV------GQAAAKIKKDL-PGYKYFNVCGTIDKAVEYAFNNAQKEDIILL 425


>gi|238760095|ref|ZP_04621245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
 gi|238701714|gb|EEP94281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
          Length = 444

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 148/400 (37%), Gaps = 52/400 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  +   + +V +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSEAAKAGVEIVGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L K L+ L       V +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVP-------------ALSLLKQLT-LQKHENQLVVL 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 164 ELSSFQLE--TTSSLLAKAATLLNVTEDHTDRYPFGLQQYRAAKLRVYEN----AKVCVV 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 218 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 268

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  +  L+ L     +  RF+ V  ++    I    A 
Sbjct: 269 KLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLSHRFQLVFEHNGVRWINDSKAT 328

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +      +   +  D   I     D    E 
Sbjct: 329 NVGSTEAALDGLQ--VDGTLHLLL-GGDGKSADFSGLTRFLQGDHIKIYCFGRD---GEQ 382

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 383 LAELRPEVSQ------LTETMEQAMILLSKSLAPGDMVLL 416


>gi|283786910|ref|YP_003366775.1| murein peptide ligase [Citrobacter rodentium ICC168]
 gi|282950364|emb|CBG90012.1| murein peptide ligase [Citrobacter rodentium ICC168]
          Length = 457

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 118/363 (32%), Gaps = 38/363 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMAAWILEACGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ +  A         VG QG     KK+ A  +  +V 
Sbjct: 207 LV-RIVPGQGRIIYPENDINLKQTL--AMGCWSEQELVGEQG-HWQAKKLNADASAWEVW 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVQPADAAAALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVA 465
           AD   +         P  I    AE+             ++A+    ++     D ++V 
Sbjct: 381 ADEVYLLQ-------PPHIPWQVAEVADACVQPAHWSGDVDALAEMVVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|293556209|ref|ZP_06674799.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039]
 gi|294615651|ref|ZP_06695506.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636]
 gi|291591480|gb|EFF23134.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636]
 gi|291601628|gb|EFF31890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039]
          Length = 444

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 121/363 (33%), Gaps = 57/363 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG+ GK+S    +  +      +S+ IG   T     Q    +  +  Y    L+Y 
Sbjct: 108 IAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-DGTGHGDPQAEFFSFEACEYRRHFLAY- 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+ +    F A   +  ++
Sbjct: 166 -------------------------SPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQV 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
              +     Y DDAY +++      A   +   G  +   I  + +    +     +   
Sbjct: 201 ---KKAIFAYGDDAYLRKL-----EADVPIYYYGVTENDDIQARNIERTTSGSAFDV-YH 251

Query: 297 GKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G +F   F  P  G+  + NAL    +     +D   V E +     V  RF        
Sbjct: 252 GDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVKRRFSEKIVADM 311

Query: 355 GGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    ++  +    +      II VF                 ALDLAD  
Sbjct: 312 --TVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKV 369

Query: 414 IVTDD--NPRSE----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
            + D   + R E      E + A+I  G  G + K N +        +L+  D +V+  G
Sbjct: 370 YLCDIFGSAREEQGNVKIEDLGAKIKKG--GEVIKENNVS------PLLDYHDAVVIFMG 421

Query: 467 KGH 469
            G 
Sbjct: 422 AGD 424


>gi|332975055|gb|EGK11961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella kingae ATCC
           23330]
          Length = 451

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 110/359 (30%), Gaps = 27/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L + GT GK++ AS +  + + +G      G    I    Q+  +   S      
Sbjct: 103 HKMWVLGIAGTHGKTTTASMLAWVLEYAGY-----GAGFLIGGVPQNFSV---SARLPQN 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             ++   +   + +          H     +       NL  DH D      A    +  
Sbjct: 155 DSAFFVIEADEYDTAFFDKRSKFVHY----RPRTAILNNLEYDHADIFPDLHAI-QTQFH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P +   +    +    E ++R       +   G Q  +    ++  +       
Sbjct: 210 HLVRTVPNQGLIVANGREESLHETIER--GCWTPIEWFGNQAGW----QIANVGADGSFD 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L GE    NAL        +G+      E L +   V  R E  G 
Sbjct: 264 VHFKGEHVGHIAWELLGEHNRMNALAVIAAARHVGVSVQAACEALSQFKNVKRRMEIKGV 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
              G  +Y D+AH   ++   +  +R       I+              +   +  +L  
Sbjct: 324 E-NGVTVYDDFAHHPTAITTTVAGLRDKVGAARIIAVLEPRSNTMKLGTMKTALSGSLKN 382

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD            D +   A +  G    + K +  E +   +      D ++V   G
Sbjct: 383 ADQVFC---YTGGVDWDVADALVPLGNKLHVGK-DFDEFVNAIVAAAKSGDHILVMSNG 437


>gi|300112941|ref|YP_003759516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
 gi|299538878|gb|ADJ27195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
          Length = 452

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 162/441 (36%), Gaps = 68/441 (15%)

Query: 35  SDSRHIQAGWIFVAIVGNK---------EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            DSR    G +  A+  +           D  L I +A  Q    +VVS   +L + +  
Sbjct: 40  MDSREFPPG-L-AALQEHNPDVVLRLGGFDAAL-IAEA-EQ----LVVSPGVALSEPAIQ 91

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +     I V+ +      LFAS         ++ +TG++GKS+V S ++ + +++G    
Sbjct: 92  VAQARGIPVIGDIE----LFASYAK----APVIGITGSNGKSTVTSLLEMMARQAGKQVL 143

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G                        AL  L         +E SS  L+      +  +
Sbjct: 144 AGGNLGL-------------------PALELLEKPVPDLYILELSSFQLE--TTYTLNTV 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A    N+  DH+D +    AYF AK R++          II  DD     + +   +  C
Sbjct: 183 AACVLNISPDHMDRYPDLDAYFQAKARIYRG----TGTMIINTDDFRVASLAQ--PHRSC 236

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCI 323
              ++G      +  +        ++ ++   ++       PL G   + NAL A  L  
Sbjct: 237 LRFTLGNPNNNEYGLR----EYGGEIWLARGHEELLSTRRLPLAGRHNLANALAALALGE 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+  A +L  L+    +P R E++    +G R Y D   T+  +   +  I  +    
Sbjct: 293 AAGLPRAAMLSALQVFPGLPHRCEWL-AEVKGVRWYNDSKGTN--VGATVAAIEGMPCQG 349

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            +V+   G  +     P+   +      + ++  D  R E      A +  G+P +    
Sbjct: 350 KLVLIAGGVGKGADFSPLREPLVQRARAVVLIGQDASRLE------AVLAGGLPLY-RAN 402

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +  EA+  A  +    D +++
Sbjct: 403 SMGEAVAKASALAQSGDCVLL 423


>gi|209884381|ref|YP_002288238.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872577|gb|ACI92373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oligotropha
           carboxidovorans OM5]
          Length = 465

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 148/436 (33%), Gaps = 51/436 (11%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A++++    L      ++  +     I V+ +   F      R         +A+TGT+
Sbjct: 67  AALILTPGVPLTHPRPHWTVEMARKAGIEVIGDIELFCRE---RRLHAPGAPFIAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  +    + + +G  +   G   T                     LS         
Sbjct: 124 GKSTTTALTAHLMREAGFDAQMGGNIGT-------------------AILSLAPPAPQRV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ +D      +    G   N+  DHID H + + Y   K RL    +P+   A
Sbjct: 165 YVIEMSSYQIDL--TPSLDPSVGILLNVTEDHIDRHGSIEHYAEVKERLVVG-VPRGGTA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----D 299
           I+  DD +S +  + A + G  V+ V  Q             + +++     G      D
Sbjct: 222 IVGVDDDFSTKAARAAEDTGKHVVRVSVQ----RALDDGVFLDGERIVRGAAGGTAKLVD 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            + +  L G     NA  AA   +A+G+   +V   L     +  R E VG   +G  ++
Sbjct: 278 LNGIGSLRGRHNAQNAACAASAALALGVPFDVVQRGLASFPGLAHRMEQVG--QKGEVLF 335

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           V+ +  +N+ +   + + + T+   I     G  +  G   +            I     
Sbjct: 336 VNDSKGTNA-DAAARALSSFTNIYWIA---GGKPKTGGIESLREFFPRIRKAYLIGEAAQ 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
             S   E +  EI   +   +    R  A        +    +V+      +     N E
Sbjct: 392 EFSRTLEGVPQEISGTLDEAVPHAARDAA-------ASGGHAVVLLSPACASFDQFPNFE 444

Query: 480 KKMSVDCDIIREILGL 495
            +      ++  + G+
Sbjct: 445 VRGDYFRKLVLALGGV 460


>gi|153948046|ref|YP_001402574.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pseudotuberculosis IP 31758]
 gi|152959541|gb|ABS47002.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pseudotuberculosis IP 31758]
          Length = 461

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 120/363 (33%), Gaps = 34/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRPLIMNNLEFDHADIFDDIKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+  +D + K+VM  A         VG  G +   +KV    +  +V 
Sbjct: 207 LV-RLVPGKGKIILPDNDNHLKQVM--AMGCWSEQELVGETGSWF-ARKVSTDASVYEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LD-NNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L  
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVA 465
           AD   +         P+ I  +++      I+       I   ++M        D ++V 
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|262341152|ref|YP_003284007.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272489|gb|ACY40397.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 453

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 135/352 (38%), Gaps = 42/352 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TG++GK++ +S + +I +R G+     G                       ++ S 
Sbjct: 108 IISITGSNGKTTTSSIIYKILKREGIDVGIAGNIG--------------------RSFSK 147

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +      +E SS  LD       +       N+  DH+D +   ++Y ++K ++   
Sbjct: 148 EVIKKKDVYVLEVSSFQLDD--CQIFRSNIAVLLNITEDHLDRYDDIESYMHSKFKI-AT 204

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVT 292
           L  KE   I   DD   ++ +K+    + C   S+  +   G +I   K+   + K Q  
Sbjct: 205 LQKKEDIFIYNHDDPLIRKGLKKYPIFSHCIPFSIKEELHIGAYIKNNKIFIRNQKNQEI 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                KD     PL G+  +YN + +  +     +    ++  + KL  +  R E +  +
Sbjct: 265 CFFNVKD----IPLIGDHNLYNIMASLMISEIFNVKKKSIVSTILKLKPIEHRMEKI-LS 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G +   D   T+  +  +    +++    I +    G D+      ++  +   +  I
Sbjct: 320 INGVQFINDSKATN--VHAVFSAFKSMNGPIIWI--AGGKDKGNNYIELIPLVQKKVKAI 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  +N      EKI       I   +E  +  +A+  A  + +  D +++
Sbjct: 376 ICLGINN------EKIYNFFKDIIDIILETKSIQKAVYMAYILSSHGDNILL 421


>gi|257877577|ref|ZP_05657230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC20]
 gi|257811743|gb|EEV40563.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC20]
          Length = 455

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 107/279 (38%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +D ++      TN+   HIDYH ++  Y  AK RL ++ +  +   +I
Sbjct: 171 MELSSFQLM--GIDTLRPKIAVITNIYEAHIDYHGSRPEYVLAKWRL-QQRMTADDYLVI 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +    + +  +++       +         L  +  ++ K++V ++ +         +
Sbjct: 228 NWNQPELEALSAKSNAQIIPFSTKEKVAGAYMLDGI--LYYKEEVIMAAD------ELGV 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + NAL A  +     + +  + + L+    VP R ++V T ++        A   
Sbjct: 280 PGDHNIENALAAIAVGKLCDMPNEAIKQALQTFTGVPHRTQYVTTINQVKFFNDSKATNI 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L           +++   G DR      ++  +    A +          E  E
Sbjct: 340 LATEMALGGF----DNEKLILLAGGLDRGNSFDDLVPALKGLKAIVLF-------GETKE 388

Query: 427 KIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           K+ A         IE  + +E A+  A  +    D +++
Sbjct: 389 KLAAAAQAAGIKTIEMTDNVETAVPLAFSLSAAGDTILL 427


>gi|238791171|ref|ZP_04634810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
 gi|238729304|gb|EEQ20819.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
          Length = 438

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 146/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   +    +   + +V +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALNDAAEAGVEIVGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                        AL+ L  +    V +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGV-------------------PALTLLRQEN-QLVVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLHASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 212 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  +  L+ L     +  RF+ V  ++    I    A 
Sbjct: 263 KLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLSHRFQLVFEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  I+    G + ++   G  +      +   +  D   +     D    E 
Sbjct: 323 NVGSTEAALDGIQ--VEGTLHLLL-GGDGKSADFSGLTRFLQGDHIKVYCFGRD---GEQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 377 LAELRPEVSQ------LTETMEQAMVLLAKSLAPGDMVLL 410


>gi|284039597|ref|YP_003389527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirosoma linguale
           DSM 74]
 gi|283818890|gb|ADB40728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirosoma linguale
           DSM 74]
          Length = 449

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 129/363 (35%), Gaps = 41/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++       + + +G   F +G    I          
Sbjct: 96  EFAARYTK---ARLIGITGSNGKTTTTLLTYHLLKTAG---FNVGLAGNIGD-------- 141

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-T 222
                        + +    +  +E SS  LD   +   +L      N+  DH+D +   
Sbjct: 142 --------SFAEQVIADTYDYYVLELSSFQLDD--MYKTQLDVMVLLNITPDHLDRYNYE 191

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKK 281
            Q Y  +K R+ +   P +S      +     E+ KR  +     +S+        +L  
Sbjct: 192 FQNYVASKFRILQNARPADSFIYFAENQPILDELAKRQPDVKKLPISLQSTPSPGGYLAD 251

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                  Q  + +++  +     PL G     N L A     ++G+ S  +   L+    
Sbjct: 252 GQLTAKTQTQSFAIQQSE----TPLRGPHNALNMLAAILAAQSVGVTSEAIQAGLKTFQN 307

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              R E  GT   G +   D   T+  ++ +   + ++ +  I +    G D+      +
Sbjct: 308 AAHRLEPAGT-INGIQFINDSKATN--VDSVFYALSSMDTPTIWI--AGGQDKGNDYSQL 362

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              ++  +  +  +  DN       K+       +P   E  N  +AI   +E+    DV
Sbjct: 363 DALVSQKVKALICLGVDN------HKLVDYFGGKVPLIYETQNITDAIAKGLELGQSGDV 416

Query: 462 LVV 464
           +++
Sbjct: 417 VLL 419


>gi|213691751|ref|YP_002322337.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254765983|sp|B7GQ79|MURC_BIFLI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|213523212|gb|ACJ51959.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457845|dbj|BAJ68466.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 512

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 125/428 (29%), Gaps = 65/428 (15%)

Query: 82  FSATIRSNTPILVVDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V  +           + A  + GK     + V G  GK++ +S +  I
Sbjct: 90  YSSAIKPDNPEIVAAHAAGKRIVHRSDILALLMNGK---RAVTVAGAHGKTTTSSMLSHI 146

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G       P+  I  F Q      P    L    +      V        S     
Sbjct: 147 LVNAGAD-----PSYAIGGFIQG-----PDGTTLDGGHAGKGDILVAEADESDGSFA--- 193

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN   DH+D++  +  Y  A               II  DD     V
Sbjct: 194 ----KYHPTIAIITNCEADHLDHYGDEAHYRAA---FVAHAGRATGHVIISIDDPDGLAV 246

Query: 257 MKRAH-NAGCRVLSVGYQGK------------FIHLKKVCAIHNKQQVTISVEG------ 297
           ++    +     ++ G   +            +I  +   A    +Q+T+ +        
Sbjct: 247 LEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGVEQLTLHLPAAVTAGE 306

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A    + +G+  A   +          RF+  GT  +  
Sbjct: 307 PVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAKAAGTFLGAARRFQVRGTVKQ-V 365

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R      I V+F                 +L  AD  I+
Sbjct: 366 TVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAESLAKADDVII 425

Query: 416 TDDNPRSED--------PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
           T   P  E         P  I  +   G+             +   A +      +  DV
Sbjct: 426 TGIFPAREKQADFPDISPSTIV-DAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAHHGDV 484

Query: 462 LVVAGKGH 469
           +   G G 
Sbjct: 485 IFTVGAGD 492


>gi|269122885|ref|YP_003305462.1| UDP-N-acetylmuramate/alanine ligase [Streptobacillus moniliformis
           DSM 12112]
 gi|268314211|gb|ACZ00585.1| UDP-N-acetylmuramate/alanine ligase [Streptobacillus moniliformis
           DSM 12112]
          Length = 445

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 117/372 (31%), Gaps = 39/372 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  K P   +AV GT GK++ +S                G    ISS ++    
Sbjct: 93  GELLAEIMDKLPLG-IAVAGTHGKTTTSSLATVAFLDKDPYVAVGGIIPEISSNSKVGSS 151

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                      ++       + + +                      TN+  DH+++H +
Sbjct: 152 DY--------FIAEADESDNSFLYM---------------NPYYSIITNIEADHLEFHGS 188

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHL 279
            +    +  +  ++   K              E ++   +      SV  + K    I+ 
Sbjct: 189 LENIKKSFGQFIKQTKYKVLACFDC-------EEIRTYSDDKLVFYSVDEKNKDKVSIYA 241

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           K + ++++         G +   F   +PG   V NAL    +     +D   V E +EK
Sbjct: 242 KNIHSLNSITYFDAVKNGIELGTFKLSIPGIHNVSNALAVIYIAHEEKLDMDNVKERIEK 301

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
                 R++ +       RI  DYAH    +   +   +      I V+F          
Sbjct: 302 FRGANRRYQVI--YDEDFRIIDDYAHHPTEIMATINAAKMNEKKEITVIFEPHRYSRTKF 359

Query: 399 RPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                  +L LAD   +      SE+   +    ++   I    +   + + +   +E  
Sbjct: 360 FLKEFAESLALADRIFLLPIYSASEENTYDVSSEDLAKLIGNHSKVYEKEKLVEILLEED 419

Query: 457 NKQDVLVVAGKG 468
            K  V +  G G
Sbjct: 420 KKGKVYIFMGAG 431


>gi|319649665|ref|ZP_08003821.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
 gi|317398827|gb|EFV79509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
          Length = 450

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 104/291 (35%), Gaps = 21/291 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S ++       ++           +   +      TNL   H+DYH T++ Y  AK  + 
Sbjct: 152 SEVAQNAAEENNIVIELSSFQLMGIQDFRPRIAILTNLYDAHLDYHGTREEYHAAKANIT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                K+   I+ AD     +VM+ A  +  +++          +    A      +  +
Sbjct: 212 MNQTEKD-YFIVNAD---QDKVMEAAARSEAKIIPFSTS----RVLSEGAYVKDGWIYFN 263

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         LPGE  + N L +       G+ +  + + L     V  R ++VG   +
Sbjct: 264 DEQVMKRKDVSLPGEHNLENILSSVAAAKLTGVGNEAISQVLSSFTGVKHRLQYVG-EYQ 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + Y D   T+  +      +        +++   G DR  G   ++  +    A   +
Sbjct: 323 SRKFYNDSKATN--ILATKNAVSAFDQP--VILLAGGLDRGNGFDELIPSLKKVKA---L 375

Query: 415 VTDDNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           VT      +  EKI  A +  GI       N  +A+  A ++    DV+++
Sbjct: 376 VT----FGQTAEKIENAAMEAGIKTIERVDNVEKAVPAAFKLSEPGDVILL 422


>gi|309810065|ref|ZP_07703911.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169564|gb|EFO71611.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners SPIN
           2503V10-D]
          Length = 440

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 106/366 (28%), Gaps = 50/366 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++G+ GK+S    +  +  +   +SF IG   T  +          +  Y    L+Y 
Sbjct: 109 IGISGSHGKTSTTGLLAHVLGQLAPTSFLIG-DGTGKAIKDSRFFVYEADEYRRHFLAY- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY + +  Y +A     E+ 
Sbjct: 167 -------------------------HPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD     +            + G+          +          +   
Sbjct: 201 --TKKGLFVWGDDTRLNNI-----QVSIPKYTYGFNNTDDFQAYDIQKNITGSTFKVKYH 253

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +   F   L G+  + N      +         LV   L        RF     +   
Sbjct: 254 DTELGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGAKRRFS--EKSYGK 311

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  L+  R    +  ++ +F         +        L  AD A 
Sbjct: 312 INIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQFVEILKTADYAY 371

Query: 415 VTDDN-PRSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV-AGKGHE 470
           VT       E+   I   ++   IP       + I       ++   +D ++V  G G  
Sbjct: 372 VTPIFGSARENHGNISSQDLTKRIPNSEVISLDNIA------DLTKFKDAVLVFMGAGDI 425

Query: 471 TVHIVT 476
           T + V 
Sbjct: 426 TKYEVA 431


>gi|302389258|ref|YP_003825079.1| FolC bifunctional protein [Thermosediminibacter oceani DSM 16646]
 gi|302199886|gb|ADL07456.1| FolC bifunctional protein [Thermosediminibacter oceani DSM 16646]
          Length = 434

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 142/408 (34%), Gaps = 56/408 (13%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST------- 152
           + L L  +   G     I+ V GT+GK S  + +  I + +G                  
Sbjct: 28  RLLQLLGNPHEG---IKIIHVAGTNGKGSTCAMIDSILRAAGYRVGLYTSPYLEVFNERI 84

Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR------------- 198
            ++     +         + KA+  + ++G    +       L                 
Sbjct: 85  RVNGRNIPDEDIARLTEKVRKAIREMEARGWGVPTEFEVVTALGFMYFKEQNLDFLVLEV 144

Query: 199 --------LDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYAD 249
                    + +  +    T++  DH  Y   T +     K  + ++ +P         +
Sbjct: 145 GMGGRYDATNVVTPLVSVITSISYDHQQYLGNTLEEIAREKCGIIKQGVP---VVTAPQE 201

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
               + +        C ++ V  + ++  L         Q  ++      +D     L G
Sbjct: 202 PEAMRVIEDTCREQNCPLVKVEEKTRYRLLD---WGLEGQVFSLQTSRNTYDNLKIKLLG 258

Query: 309 EFQVYNALVAAGLCIAI-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           + Q+ NA  A     A+      I    V + L +     GR E +G   R   + +D A
Sbjct: 259 DHQLDNAATAVASVEALEHYGINITRQAVEKGLLEARWP-GRLEIMG---RNPDVLIDGA 314

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRS 422
           H  + + ++   I     G+  V+   G  +D+    ++ +I + +AD  + T  D+PR+
Sbjct: 315 HNPSGVGVLKSAILKYFPGKR-VILVIGILKDKDYLKMLEEI-IPVADAVVATRPDSPRA 372

Query: 423 EDPEKIRAEI----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +P ++   I    +  +P    +    EAI TA E+    DV+V AG
Sbjct: 373 LEPNELEGSIKSLNLEKMPEIYVREEVEEAIDTAYEIAGASDVIVFAG 420


>gi|90023001|ref|YP_528828.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Saccharophagus degradans
           2-40]
 gi|89952601|gb|ABD82616.1| UDP-N-acetylmuramate [Saccharophagus degradans 2-40]
          Length = 455

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 123/396 (31%), Gaps = 49/396 (12%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS         A +    P +            A      H + +LAV+GT GK++  S
Sbjct: 72  VVSRGNPA--MEAVLNRGIPYI------SGPQWLAENWL--HQKWVLAVSGTHGKTTTTS 121

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + +G +   +     I     +   +           + L       +  +   
Sbjct: 122 MLTWILEYAGFAPGYL-----IGGVPGNFESS-----------ASLGESDFFVIEADEYD 165

Query: 192 HGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 R   +  +       NL  DH D +    A       L   +LP +   +    
Sbjct: 166 TAFFDKRAKFVHYRPRTLIINNLEFDHADIYPDLAAIQRQFHHLL-RMLPADGLLLAPNG 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPG 308
            A   EV+++   +  + L   +Q K           +  Q  +  +G+      +   G
Sbjct: 225 VAAIDEVVEQGFWSDKQTLGDDWQVKLHA-------EDGSQFDVVFDGESAGQVTWGQTG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V N L A      IGI  AL  E L     V  R E +    R   +Y D+AH   +
Sbjct: 278 LHNVSNGLAAIAAARHIGIAPALACEALCAFKGVKRRMELIAQTDR-VNLYDDFAHHPTA 336

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++  L+ +R       IV            G        +   AD  +        E  +
Sbjct: 337 IQTTLEGLRAKVGSERIVAIIEPRSNTMKMGVHRQQLLSSAQAADNVL------WFESAD 390

Query: 427 K---IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
               ++AE+     G     N  E + +A+  L   
Sbjct: 391 AKWSLKAELDKPAQGSQVCTNLSELVASAVSNLGDG 426


>gi|310287099|ref|YP_003938357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
 gi|309251035|gb|ADO52783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
          Length = 476

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 122/371 (32%), Gaps = 45/371 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +   +GL +  +G      S                  
Sbjct: 100 PAPWVGITGTNGKTSTTEMTSAMLCANGLVAPAVGNIGKAVS------------------ 141

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K ++
Sbjct: 142 -HAAVDPDNDALCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSKV 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSV----------GYQGKFIHLKKV 282
           F  +       +  ADD     +   AH A  CR +            G    +I  +  
Sbjct: 199 FRNV---RRALVFNADDRRVSALASAAHTAEGCRRIGFTLGVPQPGQIGVDDGWIVDRSG 255

Query: 283 CAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A       T     ++F  L           + +A+ A  L + +G+D    L  L+  
Sbjct: 256 VAGGAFGDETRLAPVQEFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKAF 315

Query: 340 HVVPGRFEFVGTN--SRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                R + V T     GG I ++D +  +N+               + +    G  +  
Sbjct: 316 APGGHRIQTVATAATGDGGSIRFIDDSKATNAHAARASLSSFAPKSVVWI--AGGLAKGS 373

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIE 454
               ++   A  +    I+  D  P  E       +I +  I           A+  A  
Sbjct: 374 RFEQLVADQAHTIKAAVIIGKDQKPMLEAFAASAPDIPLTVIEPEPSDTVMARAVDAAGA 433

Query: 455 MLNKQDVLVVA 465
                DV+++A
Sbjct: 434 YAGTGDVVLMA 444


>gi|259047061|ref|ZP_05737462.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella adiacens ATCC
           49175]
 gi|259036111|gb|EEW37366.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella adiacens ATCC
           49175]
          Length = 443

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 104/367 (28%), Gaps = 49/367 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S ++  A       ++      KFL               +A+TG+ GK+S    +  
Sbjct: 74  PDSHEELVAAREKGIEVI---RYHKFLGELLKNY------KSVAITGSHGKTSTTGLLAH 124

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +      +S+ IG   T             +  Y    ++Y                   
Sbjct: 125 VLSGMEPTSYLIG-DGTGKGVESSEHFVLEACEYKRHFMAY------------------- 164

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                  +      TN+  DH DY+       +A    F + + K   A    DD   + 
Sbjct: 165 -------RPDYAIMTNIDFDHPDYYTDIDDVQSA-FEAFGKQVKKGIIA--CGDDERLRT 214

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYN 314
           +             VG     I  K +            + G+ +  F  P  G+  + N
Sbjct: 215 LEAIVP---VTYYGVGEHNDVI-AKNIRKEKAGSYFDAYIHGELYGHFYIPTYGDHNILN 270

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL          +D   + +       V  RF     N  G  +  DYAH  + +   L 
Sbjct: 271 ALAIIAFYYLNQLDPNELAQQFRTFSGVKRRFSEKVIN--GVTVIDDYAHHPSEIRATLD 328

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP--RSEDPEKIRAE 431
             R       ++ VF                  L LAD   + +     R E  +    +
Sbjct: 329 AARQKYPDKEVVAVFQPHTFTRTIALLEEFASVLSLADHVYLCEIFASVREEAGDVSIED 388

Query: 432 IIHGIPG 438
           +   + G
Sbjct: 389 LAKLVKG 395


>gi|332707401|ref|ZP_08427451.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lyngbya majuscula
           3L]
 gi|332353892|gb|EGJ33382.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lyngbya majuscula
           3L]
          Length = 470

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 124/388 (31%), Gaps = 33/388 (8%)

Query: 82  FSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  +  + P+LV   T+    +               +AVTGT+GK++  S +  I Q 
Sbjct: 80  VSPGVPWDIPVLVAARTQGIETIGEIELAWRYLQSCPWVAVTGTNGKTTTTSLIAAIFQE 139

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G  +   G                   + LA  ++  + +      V            
Sbjct: 140 AGFHAPACGNIG-----------YAACELLLAPEINGKAQETSPIDWVIGEISSYQIESS 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G  T L  DH+  H+T + Y++ K  L    L +    +I  DD Y   +   
Sbjct: 189 KDLAPRIGVLTTLTPDHLSRHKTLENYYDIKASL----LRRSQLQVINGDDPYLGNLGVN 244

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  +   G QG      +  A      V    E         + G+    N L+A 
Sbjct: 245 YWPDAYWISITGGQGD--RNFQPWAYIQDDWVIADSEPILPVKSLQMVGDHNRQNLLMAV 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 GI+   +   + K   VP R E V T      I    A   ++ ++ L ++   
Sbjct: 303 ATARLAGIEKNAIASAIAKFPGVPHRLEKVITWQGIDFINDSKATNYDAAQVGLASVAAP 362

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           T     ++   G  +       +  I L  A + ++ +  P      K       G   +
Sbjct: 363 T-----ILIAGGEAKAGDDTSWIETIKLKAAVVLLIGEAAPAFATRLK-----EAGYSSY 412

Query: 440 IEKGNRIEAIRTAIEMLN---KQDVLVV 464
                  +A+  A E+        V+++
Sbjct: 413 EIVETMAKAVPRAAELAQQYNAG-VVLL 439


>gi|257898345|ref|ZP_05677998.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15]
 gi|293571806|ref|ZP_06682822.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980]
 gi|257836257|gb|EEV61331.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15]
 gi|291608060|gb|EFF37366.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980]
          Length = 444

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 121/363 (33%), Gaps = 57/363 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG+ GK+S    +  +      +S+ IG   T     Q    +  +  Y    L+Y 
Sbjct: 108 IAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-DGTGHGDPQAEFFSFEACEYRRHFLAY- 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+ +    F A   +  ++
Sbjct: 166 -------------------------SPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQV 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
              +     Y DDAY +++      A   +   G  +   I  + +    +     +   
Sbjct: 201 ---KKAIFAYGDDAYLRKL-----EADVPIYYYGVTENDDIQARNIERTTSGSAFDV-YH 251

Query: 297 GKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G +F   F  P  G+  + NAL    +     +D   V E +     V  RF        
Sbjct: 252 GDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVKRRFSEKIVADM 311

Query: 355 GGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    ++  +    +      II VF                 ALDLAD  
Sbjct: 312 --TVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKV 369

Query: 414 IVTDD--NPRSE----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
            + D   + R E      E + A+I  G  G + K N +        +L+  D +V+  G
Sbjct: 370 YLCDIFGSAREEQGNVKIEDLGAKIKKG--GEVIKENNVS------PLLDYHDAVVIFMG 421

Query: 467 KGH 469
            G 
Sbjct: 422 AGD 424


>gi|254491357|ref|ZP_05104537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxidans DMS010]
 gi|224463486|gb|EEF79755.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxydans DMS010]
          Length = 413

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 146/399 (36%), Gaps = 51/399 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+S     +        +  I +V +  +  S +A          I+A+TG++GKS
Sbjct: 35  ADMVVLSPGVDPRLPEIKAAKDAGIEIVGDI-ELFSRYAE-------APIVAITGSNGKS 86

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + +  + Q SG +    G   T                    AL  L  +      +
Sbjct: 87  TVTTLLALMAQLSGKTVKAGGNLGT-------------------PALDLLEGETPDFYIL 127

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R   +   A    N+  DH+D + +   Y  AK ++F      +   ++ 
Sbjct: 128 ELSSFQLETVR--SLNAFAAVVLNVSPDHMDRYDSVSDYQQAKQKIFNG----DGVMVLN 181

Query: 248 ADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            +D + +E+     N     L  S G     +       +   +   ++++         
Sbjct: 182 TEDPFVQEMRIEGRNHIGFGLHKSEGVDFGLLQYDGAVWLAEGESPLLAID------AMK 235

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+  + NAL A  L  A+ +    +L  L+  + +P R   V   +   R + D   T
Sbjct: 236 IVGKHNLANALAALALGSAMALPMPAMLSALQAFNGLPHRCRLVRVLNE-VRWFNDSKAT 294

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +  +   +  I  +     IV+   G  + Q    +   +   +  + ++       ED 
Sbjct: 295 N--VGACIAAINGLADDGAIVLIAGGVGKGQDFSELTESLEKAVRAVVLL------GEDA 346

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +KI   I   +   I   +  +A+  A  +    D +++
Sbjct: 347 DKIATAIPPQVEQ-IHATDMQDAVLKAQSLAQPGDNVLL 384


>gi|325266701|ref|ZP_08133377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella denitrificans
           ATCC 33394]
 gi|324981810|gb|EGC17446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella denitrificans
           ATCC 33394]
          Length = 460

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 113/368 (30%), Gaps = 45/368 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P  +L V GT GK++ AS +  + + +G     +G    I    Q+  ++         
Sbjct: 103 QPYWVLGVAGTHGKTTTASMLAWVLEYAG-----LGAGFLIGGVPQNFSVS--------- 148

Query: 173 ALSYLSSQGVTHVSVEASSH--GLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFN 228
             + L   G     +EA  +       R   +  +       NL  DH D      A   
Sbjct: 149 --ARLPQDGSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAI-Q 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            +       +P E   +        +EV+ +       V   G     +   ++ A    
Sbjct: 206 TQFHHLVRTVPGEGLVVANGQAEPLREVIDK--GCWTPVEWFG----NLEGWQIGAADEN 259

Query: 289 QQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               +  +G+      + L GE    NAL         G+  A     L +   V  R E
Sbjct: 260 GGFDVFFQGEKLGRVAWDLLGEHNRLNALAVIAAARHAGVPVAQACAALGEFKNVKRRME 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-- 405
             G    G  +Y D+AH   ++E  +  +R    G  IV              +   +  
Sbjct: 320 IKGVAG-GITVYDDFAHHPTAIETTIAGLRQKVGGARIVAVLEPRSNTMKLGTMKAALPG 378

Query: 406 ALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +L  AD        V  D   +  P   +  +     GF++                  D
Sbjct: 379 SLQAADAVFCYAGGVDWDVQAALAPLGGKLHVGRDFDGFVDD---------LAAFAQSGD 429

Query: 461 VLVVAGKG 468
            +++   G
Sbjct: 430 HVLIMSNG 437


>gi|312875020|ref|ZP_07735038.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2053A-b]
 gi|311089415|gb|EFQ47841.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2053A-b]
          Length = 440

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 106/366 (28%), Gaps = 50/366 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+G+ GK+S    +  +  +   +SF IG   T  +          +  Y    L+Y 
Sbjct: 109 IGVSGSHGKTSTTGLLAHVLGQLAPTSFLIG-DGTGKAIKDSRFFVYEADEYRRHFLAY- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY + +  Y +A     E+ 
Sbjct: 167 -------------------------HPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD     +            + G+          +          +   
Sbjct: 201 --TKKGLFVWGDDTRLNNI-----QVSIPKYTYGFNNTDDFQAYDIQKNITGSTFKVKYH 253

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +   F   L G+  + N      +         LV   L        RF     +   
Sbjct: 254 DIELGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGAKRRFS--EKSYGK 311

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  L+  R    +  ++ +F         +        L  AD A 
Sbjct: 312 INIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQFVEILKTADYAY 371

Query: 415 VTDDN-PRSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV-AGKGHE 470
           VT       E+   I   ++   IP       + I       ++   +D ++V  G G  
Sbjct: 372 VTPIFGSARENQGNISSQDLTKRIPNSEVISLDNIA------DLTKFKDAVLVFMGAGDI 425

Query: 471 TVHIVT 476
           T + V 
Sbjct: 426 TKYEVA 431


>gi|46199942|ref|YP_005609.1| folylpolyglutamate synthase [Thermus thermophilus HB27]
 gi|46197569|gb|AAS81982.1| folylpolyglutamate synthase [Thermus thermophilus HB27]
          Length = 414

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 127/392 (32%), Gaps = 50/392 (12%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +L A   + +    +  V GT+GK + A  +  I + +G           +    +    
Sbjct: 23  ALLARLGHPEEAYPVALVGGTNGKGTTARTLAAILEEAGFRVGLYTSPHLVDFRERIQVQ 82

Query: 163 TTPSPIYLAK------------------------ALSYLSSQGVTHVSVEASSHGLDQHR 198
             P P                             AL + + +GV    +E    G     
Sbjct: 83  GRPIPEEKLLALLAELRPHAERLEASFFEAATALALLHFAREGVEFAVLEVGL-GGRLDA 141

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            +  + +    TN+G DH++    T +     K  +F   +P  + A          E +
Sbjct: 142 TNATEPVLSVVTNVGHDHLEVLGPTLKDVAREKAGIFRGGVPALTAAQGEGLGVLRAEAL 201

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNA 315
            R              G+  H + V A+      T+ +E  G+       L G  Q  N 
Sbjct: 202 ARKTPLWVL-------GEDFHAEGVEALPEGLAFTLRLERTGEALRLTARLLGPHQAENL 254

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +AA     +G     V   + +          +    RG  + +D AH       + + 
Sbjct: 255 ALAALSGRLLGAGWEAVKRGVARAENPGRLQRLL---WRGRELLLDGAHNPEGALALREA 311

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIH 434
           +R    G +   F  G  RD+    +    AL      ++T     RSEDP      ++ 
Sbjct: 312 LRFH--GLLPAAFVLGFSRDKDHAAM--AEALRGLGPVVLTRYASLRSEDPRA----LLP 363

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             PG     + +EA+  A     +   +VVAG
Sbjct: 364 LFPGAKVVEDPLEALEEAFS--REG-RVVVAG 392


>gi|23465882|ref|NP_696485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum NCC2705]
 gi|30316056|sp|Q8G4Q6|MURD_BIFLO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23326585|gb|AAN25121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum NCC2705]
          Length = 481

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 120/372 (32%), Gaps = 43/372 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPQHDV 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 157 L-----------CVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSKV 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F      +   +  A DA   E+   A  A  CR +    +        +       +  
Sbjct: 204 FHN---AKRAIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSG 260

Query: 293 ISVEGKDFDFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +               V + L A  L + +G D    L+ L   
Sbjct: 261 VAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADVLTALALVLGLGADRDTALKALTSF 320

Query: 340 HVVPGRFEFVGTNS-RGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V   +  GG + +VD +  +N                I +    G  +   
Sbjct: 321 KPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLSSFPAKSVIWI--AGGLAKGSR 378

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAI 453
              ++   A  +    I+  D  P  E       +I   I    +     +R  A+    
Sbjct: 379 FEDLVKDQAHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDR--AVEACG 436

Query: 454 EMLNKQDVLVVA 465
                 D++++A
Sbjct: 437 TYAAAGDIVLMA 448


>gi|326692717|ref|ZP_08229722.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc argentinum KCTC
           3773]
          Length = 444

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 87/302 (28%), Gaps = 37/302 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G  GK+S    +  + +    +S+ IG  +       +++          +     
Sbjct: 107 IAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGT--GRGVPNSQFFVVEADEYRRHFKDY 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+        A    F   
Sbjct: 165 -------------------------APDYAILTNIDFDHPDYYHDINDVTAA-FSDFAGN 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K   A  + DD + + +   A                     +          +   G
Sbjct: 199 VKKAIFA--WGDDPHLRSLQPAA---DVYYYGTNTDRDDFVATNIRKSTQGSHFEVLFRG 253

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   +F  PL G+  + NA+    +     +D  L+ E L     V  RF          
Sbjct: 254 ESLGEFAVPLFGQHSILNAVAVIAVAYMEKVDLNLIREFLMTYQGVKRRFSEKQIAD--I 311

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    ++  L   R    + +II +F                 +L+ AD   +
Sbjct: 312 TVIDDYAHHPTEIDATLDAARQKYPNKQIIAIFQPHTYSRVIAYKDEFATSLEAADKVFL 371

Query: 416 TD 417
            D
Sbjct: 372 AD 373


>gi|322691460|ref|YP_004221030.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456316|dbj|BAJ66938.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 512

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 125/428 (29%), Gaps = 65/428 (15%)

Query: 82  FSATIRSNTPILVVDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V  +           + A  + GK     + V G  GK++ +S +  I
Sbjct: 90  YSSAIKPDNPEIVAAHAAGKRIVHRSDILALLMNGK---RAVTVAGAHGKTTTSSMLSHI 146

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G       P+  I  F Q      P    L    +      V        S     
Sbjct: 147 LVNAGAD-----PSYAIGGFIQG-----PDGTTLDGGHAGKGDILVAEADESDGSFA--- 193

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN   DH+D++  +  Y  A               II  DD     V
Sbjct: 194 ----KYHPTIAIITNCEADHLDHYGDEAHYRAA---FVAHAGRATGHVIISIDDPDGLAV 246

Query: 257 MKRAH-NAGCRVLSVGYQGK------------FIHLKKVCAIHNKQQVTISVEG------ 297
           ++    +     ++ G   +            +I  +   A    +Q+T+ +        
Sbjct: 247 LEALPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGVEQLTLHLPAAVTAGE 306

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A    + +G+  A   +          RF+  GT  +  
Sbjct: 307 PVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAKAAGTFLGAARRFQVRGTVKQ-V 365

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R      I V+F                 +L  AD  I+
Sbjct: 366 TVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAKSLAKADDVII 425

Query: 416 TDDNPRSED--------PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
           T   P  E         P  I  +   G+             +   A +      +  DV
Sbjct: 426 TGIFPAREKQADFPDISPSTIV-DAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAHHGDV 484

Query: 462 LVVAGKGH 469
           +   G G 
Sbjct: 485 IFTVGAGD 492


>gi|317055687|ref|YP_004104154.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
 gi|315447956|gb|ADU21520.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
          Length = 464

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 123/359 (34%), Gaps = 50/359 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P    A+TG+ GK++  + V +  +  G     +     I         T      +   
Sbjct: 116 PCKTYALTGSDGKTTTTTLVSEFLKSEGKR---VHLGGNIGKALLPLVETISETDVVVCE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L               SS  L   R           TN+  +H++ H T + Y  AK  +
Sbjct: 173 L---------------SSFQLISMRES---PDVAGITNIRPNHLNVHGTMEEYTLAKCNI 214

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            +      + +++  DD  ++ +  R     A   +      G F+    +   + + +V
Sbjct: 215 LDHQ-NAYARSVLSLDDEVTRGLQDRVRGDLAWFSIKEKPDNGAFLREDGMLCYNERGKV 273

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T  V  KD      +PG   V + L A  +     +    V +  ++   V  R EFV  
Sbjct: 274 TEYVHMKD----IKIPGMHNVEDYLTAIAMTYGE-VKPENVAKIAKEFGGVEHRIEFV-R 327

Query: 352 NSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              G + Y +  A +   +   L            ++   G D+     P+   I   + 
Sbjct: 328 ELDGVKYYNNSIASSPTRVLACLAAFDQ-----KQIMIQGGSDKGVSFEPMAAPICEKVK 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGF-------IEKGNRIEAIRTAIEMLNKQDVL 462
            + ++       +  +KIRA +    P F       I   +  EA+RTA E   + D++
Sbjct: 383 VLILM------GQTKDKIRAAVEA-APNFKGSGLKIITVKDMAEAVRTAREYAEEGDIV 434


>gi|296534967|ref|ZP_06897261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296264705|gb|EFH11036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 395

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 130/397 (32%), Gaps = 54/397 (13%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L V +T   L    +    +    I A+TG+ GK++    ++        +   +    
Sbjct: 1   LLRVGDTLAGLQALGAAARARSTARIAAITGSVGKTTTKEMLRHGLAALAPTHAAV---- 56

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSFT 210
                      +  +   L   L+ +       V     +H G              + T
Sbjct: 57  ----------ASYNNQWGLPLTLARMPRDSAYGVLEIGMNHRGEIAPLARLAAPHVAAIT 106

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   HI +  + +     K  + + L P  +P ++  D A    +  RA  AG R+++ 
Sbjct: 107 TVEAAHIGHLGSLEEIAEEKADIMQGLAP-GAPVVLPRDSASFARLAGRAEAAGLRMVTF 165

Query: 271 GYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L            T+S+ G+        PG     NAL A  L  A+G D 
Sbjct: 166 GADPAAEYRLLDYRGGAESGLATLSLRGETHALALAAPGRHLALNALAAIALAEALGADR 225

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHT--SNSLEM---ILKNIRTITSGR 383
           A  L  L +     GR   V  +  GG  + +D ++     ++     +L +      GR
Sbjct: 226 AGFLAALTEFRPGAGRGGRVVLDLPGGSALLIDDSYNGQPPAMRAGLGVLGSQIPGPGGR 285

Query: 384 IIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            I V G   +  +    +   +    L  AD+                   ++ G+   +
Sbjct: 286 RIAVLGDMRELGEHGPALHASLLPDVLAAADMVFC-------------CGALMRGLYDAL 332

Query: 441 EKGNRIEA-----------IRTAIEMLNKQDVLVVAG 466
              NR  A           +R A+      DV++V G
Sbjct: 333 -PENRRAAHRDSSDELAPLVRQAV---RPGDVILVKG 365


>gi|229521234|ref|ZP_04410654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
 gi|229341766|gb|EEO06768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
          Length = 467

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 96  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 147

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 148 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 188 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 241

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 242 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 296 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 354 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 404

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 405 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|314933359|ref|ZP_07840724.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
 gi|313653509|gb|EFS17266.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
          Length = 449

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 158/435 (36%), Gaps = 63/435 (14%)

Query: 48  AIVGNKE---DGHLFIPQAIAQ-----GAEAIVVSSAYSLQDFSATI--RSNTPI---LV 94
           A +G      DG      A A+     G E +      SL D +  I      P    ++
Sbjct: 29  AKLGANVKVNDGKDLSQDAHAKDLESMGIEVVSGEHPLSLLDDNPIIVKNPGIPYTVSII 88

Query: 95  VDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +  R+ L +      S L  + P  I+ VTGT+GK++V S +  + ++S ++    G  
Sbjct: 89  DEAVRRGLKILTEVELSYLISEAP--IIGVTGTNGKTTVTSLIGDMFKKSIITGRLSGNI 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             ++S          +  YL   LS     G+                    K      T
Sbjct: 147 GYVASK---VAQEAKADEYLITELSSFQLLGINEY-----------------KPHIAIIT 186

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+DYH++ + Y NAK ++++     +     Y    Y +  +    N   + L  
Sbjct: 187 NIYSAHLDYHESLENYQNAKKQIYKNQTEDD-----YLICNYHQRHLIETENLKAKTLYF 241

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDS 329
             Q      ++V  I+ K    +    +  +     LPGE  + N L A    I  G+  
Sbjct: 242 STQ------QEVNGIYIKDGFIVFNGVRIINVKDLVLPGEHNLENILAAVLAAILAGVPV 295

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +++ L     +  R +++GTN      Y + +  +N+L      + +     I +   
Sbjct: 296 KAIVDSLTTFSGIDHRLQYIGTNRTNK--YYNDSKATNTLATQF-ALNSFQQPIIWLC-- 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G DR      ++  +  +   + IV       E  EK            I+  N  +A+
Sbjct: 351 GGLDRGNDFDELIPYM--NNVRVMIV-----FGETQEKFAKLGNSQGKYVIKATNVEDAV 403

Query: 450 RTAIEMLNKQDVLVV 464
               +++   DV+++
Sbjct: 404 DKIQDIIEPNDVVLL 418


>gi|317182049|dbj|BAJ59833.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F57]
          Length = 493

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+      T +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +F   + G+F  YN   A  +   +G+++  +   + + + +  R + +  N + 
Sbjct: 325 GSVWENFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKTQLENILQATTI--QGDLILFA 486


>gi|240128167|ref|ZP_04740828.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686562|ref|ZP_06153424.1| hypothetical protein NGLG_01069 [Neisseria gonorrhoeae SK-93-1035]
 gi|268626846|gb|EEZ59246.1| hypothetical protein NGLG_01069 [Neisseria gonorrhoeae SK-93-1035]
          Length = 458

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 102/316 (32%), Gaps = 18/316 (5%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +           G      H  ++
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDKGCWTPVEKFGTG------HGWQI 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 261 GEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDVQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIV 415
                 +L  AD    
Sbjct: 380 KSALPASLKEADQVFC 395


>gi|332160056|ref|YP_004296633.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607383|emb|CBY28881.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664286|gb|ADZ40930.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862055|emb|CBX72221.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia enterocolitica W22703]
          Length = 461

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 119/365 (32%), Gaps = 36/365 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +     +      +     SP ++ +
Sbjct: 101 PGRWVLAIAGTHGKTTTAGMVAWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLVMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P     I+  +D + K+VM  A         VG  G +   K      +     
Sbjct: 207 LV-RLVPGTGKIIVPDNDNHLKQVM--AMGCWSEQELVGETGSWFARK---VAGDASVFE 260

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++ +   +  + L GE  ++N L+A      +G+  A     L        R E  G 
Sbjct: 261 VFLDNELVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINARRRLELRG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LD 408
            + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L 
Sbjct: 320 EAHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGMCRNELAPSLG 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVV 464
            AD   +         P+ I  +++      I+       I T ++M        + ++V
Sbjct: 380 RADEVFLFQ-------PQHIPWQVVEVAEACIQPAYWSADIDTLVDMVVKTAQPGNHILV 432

Query: 465 AGKGH 469
              G 
Sbjct: 433 MSNGD 437


>gi|294635007|ref|ZP_06713524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
 gi|291091606|gb|EFE24167.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
          Length = 438

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 149/401 (37%), Gaps = 60/401 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   +    +   I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALSSPALDQAAQAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +G      G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMAHAAGWPVGVGGNIGVPALT--------------------LLKQECRLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH++ +    Q Y  AK+R++E+        ++
Sbjct: 158 ELSSFQLE--TTHSLKAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYEQ----ARACVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +    H A  R +S G      HL +      + ++ + V G+        
Sbjct: 212 NADDALTMPI----HGADARCVSFGVDVGDYHLNR-----QQGEIWLRVRGEKILNTSEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+G+  A  L  L     +  RF+ V  ++    I    A 
Sbjct: 263 QLTGMHNYTNALAALALADAVGLPRASSLRALTTFRGLAHRFQLVLDHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  LK +    +G + ++   G  +     P++  +  +   +        R  D
Sbjct: 323 NVGSTEAALKGL--HLNGTLHLLL-GGDGKAADFTPLLPYLQGERIRLYCFG----RDAD 375

Query: 425 P-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P  ++R E+       +      +A+R     L   D++++
Sbjct: 376 PLMQLRPEV------SLRFTTMEQAMRAITPQLRSGDMVLL 410


>gi|124022231|ref|YP_001016538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123962517|gb|ABM77273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 460

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 104/314 (33%), Gaps = 29/314 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A           +A+TGT+GK++V   +  + + +GL +   G     ++     + 
Sbjct: 98  GEMAVAWRSLSHLPWIAITGTNGKTTVTHLLNHVLESNGLKAPMGGNVGHAAAEIA-LKW 156

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
             P+       +  LSS  +      A                 G +TNL  DH++ H T
Sbjct: 157 RQPNAQRPDWLVMELSSYQIEAAPEIA--------------PRIGIWTNLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             AY   K      LL +    I   DD      +    ++  + L V  +G      + 
Sbjct: 203 LDAYRKIK----RGLLERSEIRIFNGDDPD----LSSQRSSWDKGLWVSSEGPGTANHRA 254

Query: 283 CAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               + + +    +G  F      +PG+  + N L+        G+ +  +   L     
Sbjct: 255 DFWIDAEGLVRDPQGALFAASALAMPGQHNLQNLLMVTAAARQTGLPAKAIEASLRSFPG 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R E +G   +        A   ++  + LK +         VV   G  +       
Sbjct: 315 VPHRLEELGHIQQMSVYNDSKATNYDAACVGLKAVPAPA-----VVLAGGQTKQGDASGW 369

Query: 402 MGKIALDLADIAIV 415
           + ++ L    + + 
Sbjct: 370 LKQLDLKACAVILF 383


>gi|325915271|ref|ZP_08177591.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538464|gb|EGD10140.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 452

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 84/412 (20%), Positives = 143/412 (34%), Gaps = 28/412 (6%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + +   A  +   +A  R N  +  V +  +  S  A  L  +     + LA
Sbjct: 49  ALAQGYAPSNISPDATEVVIGNALSRGNPAVEAVLDAGRLYSSGAQWLAEQVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A+D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGREFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA   EV+  A      V   G+        ++ A             + 
Sbjct: 214 ARGRLIVNGEDARLAEVL--AMGCWTPVERFGFDAALEWSARLIAADGSTFAVAHRGVEI 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A V+  L +   V  R E +G  +R   +Y
Sbjct: 272 GQVQWPLVGRHNVLNGLAALAAVHAVGVDPATVMPALAQFQSVKRRLEVLG-QARDITVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       ++V                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRAKVGAARVLVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              R E P    A II  + G     + +EA+   + ++    D +V    G
Sbjct: 390 --HRPELPWD-AAPIIAQVRGQAHVAHDVEALLQTLGDIAQPGDHVVFMSNG 438


>gi|300857279|ref|YP_003782263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           ljungdahlii DSM 13528]
 gi|300437394|gb|ADK17161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           ljungdahlii DSM 13528]
          Length = 458

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 121/362 (33%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  I  VTG+ GK++  + +  + +  G  S+  G    I +             
Sbjct: 111 FIKYCPAKIYGVTGSDGKTTTTTLIYNMLKEQGYKSWVGG---NIGAPLFSRIEEIDPED 167

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +   LS     G+                   +       TN+  +H+D H+  + Y N
Sbjct: 168 KVVLELSSFQLMGMD------------------VSPEVAVITNISPNHLDIHKDMEEYVN 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+    ++   I+  D+  +  ++K A     +V     +      +++ +    
Sbjct: 210 AKKSIFKYQGNQD-VVILNRDNECTNAMVKEAKG---KVRQFSIE------EELTSGGYL 259

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   + ++GK    +    L G   V N L A    I   +    + +       V  R 
Sbjct: 260 KGDILCIDGKKVCKISEVKLRGMHNVANLLTAFS-AIKEDVSVDNMKKVATTFEGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EFV     G + Y D   +S +     + +  + +    V+   GG   +    ++ +  
Sbjct: 319 EFV-RELDGVKYYNDSIASSPT-----RTLAGLRAFDKPVILIAGGYDKKIPFDVLAEEG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGN-RIEAIRTAIEMLNKQD 460
                  I+          +KI+          GI   I   +   +A+  A E+    D
Sbjct: 373 YSKIKTLILM-----GATKDKIKKSFEKLKCEKGIDVPIVSVDSLTDAVNVAKELSTNGD 427

Query: 461 VL 462
           ++
Sbjct: 428 IV 429


>gi|293571733|ref|ZP_06682752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
 gi|291608190|gb|EFF37493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
          Length = 453

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 109/282 (38%), Gaps = 28/282 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   HIDYH T++ Y  AK  L + +  ++   + 
Sbjct: 168 MELSSFQLM--GITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +       E+ + A     RVL    +   +        AI+ K++  + +         
Sbjct: 226 WN----QSELQELAQRTKARVLPFSTKEVLEDGVYADDHAIYYKKEKIMEIS------EL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-A 363
            +PG   V NAL A  +    GI +  + + L   H VP R ++VG   +G + Y D  A
Sbjct: 276 GVPGTHNVENALAAITVAKLYGISNEAIRQTLHLFHGVPHRTQYVG-EIQGRKFYNDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + +M L    T      +V+   G DR      ++  +    A I          +
Sbjct: 335 TNILATKMALSGFET----AKVVLLAGGLDRGNTFDELVPSLKGIKAMIVF-------GQ 383

Query: 424 DPEK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             EK I A    GI   +   +  +A+  A+E     DV+++
Sbjct: 384 TKEKLIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILL 425


>gi|227082526|ref|YP_002811077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229507535|ref|ZP_04397040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229512269|ref|ZP_04401748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229519405|ref|ZP_04408848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229607041|ref|YP_002877689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae MJ-1236]
 gi|9656976|gb|AAF95546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|227010414|gb|ACP06626.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229344094|gb|EEO09069.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229352234|gb|EEO17175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229355040|gb|EEO19961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229369696|gb|ACQ60119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MJ-1236]
          Length = 467

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 96  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 147

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 148 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 188 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 241

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 242 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 296 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 354 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 404

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 405 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|255037244|ref|YP_003087865.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dyadobacter
           fermentans DSM 18053]
 gi|254950000|gb|ACT94700.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dyadobacter
           fermentans DSM 18053]
          Length = 456

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 151/425 (35%), Gaps = 50/425 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVAS 131
           A  L   S  I    P++V    +  L      FASR        ++A+TG++GK++   
Sbjct: 72  ASDLVVKSPGIPDKVPLIVALKEKGILVISEIEFASRYTD---AKLIAITGSNGKTTTTL 128

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               + + +GL+   +G    I                       ++ +   +  +E SS
Sbjct: 129 LTYHLLKTAGLN---VGLAGNIGDSFAWA----------------VAEKQFEYYVLEISS 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADD 250
             LD   +           N+  DH+D +    Q Y ++K  +       +        +
Sbjct: 170 FQLDN--IIDFHPYISLLLNITPDHLDRYGYDFQNYVDSKFNIIRNQQASDYFIYYKESE 227

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLPGE 309
              KE+ KR    G   +S+        L+    + N   V+  + G   +  F  LP +
Sbjct: 228 VIQKELEKRNPAVGRIEVSL-----DNALEAGSYLENGTLVS-KINGNALEIAFAELPVK 281

Query: 310 --FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 NAL A  +   +GID   + E L+     P R E V     GG  Y++ +  +N
Sbjct: 282 GPHNAINALSAISVAQLLGIDPEKIREGLKSFTNAPHRLEQVEV--IGGVTYINDSKATN 339

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++ +   + +      +++   G D+      I   +   +  + ++       +DP K
Sbjct: 340 -VDSVFYALGSFDQP--VILIAGGVDKGNDYSQIEALVKSKVKGLIVL------GKDPVK 390

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +       +P      +  +A+    E     DV++++     +  +  N E +      
Sbjct: 391 LETYFAGKVPQIYATDDVRDAVNKGREWGVPGDVVLLS-PACASFDLFKNYEDRGDQFKA 449

Query: 488 IIREI 492
            +R +
Sbjct: 450 AVRNL 454


>gi|256964811|ref|ZP_05568982.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis
           HIP11704]
 gi|256955307|gb|EEU71939.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis
           HIP11704]
          Length = 445

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 97/305 (31%), Gaps = 40/305 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    
Sbjct: 105 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG-DGTGHGEPDADFFAFEACEYRRHF 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+Y                                 TN+  DH DY+++ +  F+A  + 
Sbjct: 164 LAY--------------------------SPDYAIMTNIDFDHPDYYKSIEDVFSA-FQT 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
               + K   A  Y DD Y +++      +   V   G  +   I  + +          
Sbjct: 197 MAHQVKKGIFA--YGDDKYLRQL-----ESEVPVYYYGVSEEDDIQARNIQRTTEGSSFD 249

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +      F+ P  G   + NAL    +     +D   V E +     V  RF     
Sbjct: 250 VYHKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKV 309

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     I  DYAH    ++  +    +      II VF                 ALDLA
Sbjct: 310 SDM--IIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLA 367

Query: 411 DIAIV 415
           D   +
Sbjct: 368 DEVFL 372


>gi|313632489|gb|EFR99503.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria seeligeri
           FSL N1-067]
          Length = 470

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 105/285 (36%), Gaps = 26/285 (9%)

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + ++   ++
Sbjct: 177 EQYISMELSSFQLM--GVKTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHI-QQNQTED 233

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I  D    K + K+         +    G+  +++          +    E     
Sbjct: 234 DFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFDDEVIGAR 286

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D
Sbjct: 287 DSILLPGEHNLENVLASVAVAKTLGVANEEIMHVLETFKGVEHRTQFV-VEWQGRKFYND 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+  +      ++   +   +V+   G DR      ++       A I         
Sbjct: 346 SKATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKALIVF------- 394

Query: 422 SEDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
            E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 395 GETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDIILL 437


>gi|297581030|ref|ZP_06942955.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
 gi|297534856|gb|EFH73692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
          Length = 444

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 73  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 125 TVTDLSGMLANAAGVKAAVGGNIGVPA--------------------LDLISPDVDLYVL 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 165 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 219 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 272

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 273 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 330

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 331 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 381

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 382 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 416


>gi|92113241|ref|YP_573169.1| cyanophycin synthetase [Chromohalobacter salexigens DSM 3043]
 gi|91796331|gb|ABE58470.1| Cyanophycin synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 879

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 131/369 (35%), Gaps = 33/369 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++    +  + +++G S   +G   T +    ++ +          A  
Sbjct: 483 PIVAVTGTNGKTTTVRLISHLLRQAGRS---VGMACTGAIEIDNHVILRGDYSGPQAASI 539

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRL 233
            L    V +  +E +  G+ +  L   +   G   N+  DH+      T       K  +
Sbjct: 540 VLREPTVEYAVLEVARGGIMRRGLGFDECHVGVLLNIASDHLGESDIHTLDELARCKSVV 599

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +  + K   A++ ADD     V+     A   V+      +   ++     H     T+
Sbjct: 600 IDA-VGKSGTAVLNADDP---RVLASREWARGDVIFFTLDPESPTVRAHVRDH-GVAFTV 654

Query: 294 S---------------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                           +   +    F     F V NAL A+    A+G+  A +   L+ 
Sbjct: 655 HRDHIVMRQGHVEAEIIPVANAPITFEGLASFNVANALAASAAAHALGLGIADIQRGLQT 714

Query: 339 LHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            H  PG+        ++ G ++ +DY H   +LE + + +  I + R + V    G+R  
Sbjct: 715 FHPTPGQNPGRTNLIDAGGMKVLIDYGHNVPALEALSELVNRIPAQRRLCVASAPGNRRD 774

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIR 450
                +G     + D+  + +  PR     +    +  G                 +A  
Sbjct: 775 EDLFSLGAQLASMHDVVFLCETAPRGRPEGETVDLLRQGAMSVSGTCRVETIMQESQAAA 834

Query: 451 TAIEMLNKQ 459
            A++  ++ 
Sbjct: 835 KALDEAHEG 843


>gi|116617821|ref|YP_818192.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|227432302|ref|ZP_03914295.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|122271978|sp|Q03YA3|MURC_LEUMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116096668|gb|ABJ61819.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|227351908|gb|EEJ42141.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 444

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 92/300 (30%), Gaps = 37/300 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G  GK+S    +  + +    +S+ IG  +       +++          +     
Sbjct: 107 IAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGT--GRGVPNSQFFVVEADEYRRHFKDY 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+   +   +A    F   
Sbjct: 165 -------------------------APDYAILTNIDFDHPDYYTGIEDVTSA-FADFANN 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K   A  + DD + + +     +A      V  +        +          +   G
Sbjct: 199 VKKAIFA--WGDDEHLRSLK---PSADVYYYGVNPERDDFVATNIHKSTQGSHFDVVFRG 253

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           KD  +F  PL G+  + NAL    +     +D  L+ ++L     V  RF          
Sbjct: 254 KDLGEFAVPLFGQHGILNALAVIAVSYMEEVDLDLIRQYLLTYQGVKRRFSEKQIAD--I 311

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +   L   R    + +II +F                 +L+ AD   +
Sbjct: 312 TVIDDYAHHPTEITATLDAARQKYPNKKIIAIFQPHTFSRVIAYKDEFASSLEAADQVYL 371


>gi|261855069|ref|YP_003262352.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
           neapolitanus c2]
 gi|261835538|gb|ACX95305.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
           neapolitanus c2]
          Length = 471

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 147/406 (36%), Gaps = 64/406 (15%)

Query: 82  FSATIRSNTPILVVDNTRKF-------LSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            S  I  + P+++    ++        L+L AS +       ++ +TG++GKS+V + V 
Sbjct: 70  VSPGIALDLPLIMSARVKQIPVRGDIDLALHASDV------PVVLITGSNGKSTVTALVG 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           ++   +G+S+   G   T +                      L +     + +E SS  L
Sbjct: 124 ELLNAAGVSAVVGGNFGTPA--------------------LDLLTTDADVLVLEVSSFQL 163

Query: 195 DQHRLDGIKLI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +     G+       A +  N+ +DH+D H T   Y   K    E  L +   A++  DD
Sbjct: 164 ESTDFSGLAPAQMPRAATVLNISQDHLDRHGTLAHYAAIK----ETALHQARRAVLNRDD 219

Query: 251 AYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLP 307
                + +RA        +    Q     L  +       Q   +        +    L 
Sbjct: 220 PMVAAMAERASGDVIWFGTAMPTQPSDFGLMTIAGESWLIQAQANATALSILPVQALGLT 279

Query: 308 GEFQVYNALVAAGLCIA----IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           G     N L A  L  A    + ++   +L  L +   +P R + VG    G R   D  
Sbjct: 280 GRHNQMNVLAALALIQAVVPDVALNDDRLLNVLRQFTGLPHRAQSVGV-INGVRFIDDSK 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            T+  +   +  I  + +   +V+   G  + Q   P+   +    A + ++  D     
Sbjct: 339 ATN--VGAAVAAILGMPAP--LVLIAGGQGKGQDFAPLAESLVGRCAGLILMGQD----- 389

Query: 424 DPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNKQDVLVVA 465
             + + AE +   PG         + IEA++ A ++   Q  +++A
Sbjct: 390 --QAVIAEALQNEPGATWPVRRVHSMIEAVQAAADIAPPQSTVLLA 433


>gi|300712111|ref|YP_003737925.1| dihydropteroate synthase [Halalkalicoccus jeotgali B3]
 gi|299125794|gb|ADJ16133.1| dihydropteroate synthase [Halalkalicoccus jeotgali B3]
          Length = 807

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 82/403 (20%), Positives = 138/403 (34%), Gaps = 48/403 (11%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-------- 147
             T     L A+    +     + + G++GK S A   + I + +GL+            
Sbjct: 20  PGTESTADLLAALDDPQEGVEYVQIAGSNGKGSTAKMTESILREAGLTVGLYTSPHFDDV 79

Query: 148 -------GPTSTISSFAQDNRLTTPS--------------PIYLAKALSYLSSQGVTHVS 186
                  G   T  + A       P                +  A AL     + V    
Sbjct: 80  RERVQVDGRPMTKGALATFVERVQPHVVERAAAGEAPTFFEVMTAMALWEFGRRDVDVAV 139

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E    G        I  +A + T++  +H               R    + P E P + 
Sbjct: 140 LEVGI-GGRYDATSVIDPVASAVTSVTLEHTGILGD---TVAEIARDKAHVAPAEGPLVT 195

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+      V ++A      VL+VG +G           H + +VT++  G D +   PL
Sbjct: 196 AAEGEALSAVREQAGE----VLTVGSKGDVRVAYGGRTNHVESRVTLAGPGWDVEARIPL 251

Query: 307 PGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G +Q  NA +AA L   +  +    +   L   H   GRFE +G         +D AH 
Sbjct: 252 LGAYQARNAGIAAALARRVTSVSGTELERGLRNAHWP-GRFEVMGEE---PLTVLDGAHN 307

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSED 424
             + E + + +       + +V G   ++D          AL   D  + T  D  R+ED
Sbjct: 308 PGACEALAETLAEFEYDDLFLVVGAMHEKDHRGM----AAALPAPDHVVCTQPDLDRAED 363

Query: 425 PEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E +       G+     +G    A+  A+     +D ++VAG
Sbjct: 364 REVLARVFAERGVEDVKTRGAVSGALSRALSEAGPEDCVLVAG 406


>gi|255975546|ref|ZP_05426132.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2]
 gi|256619390|ref|ZP_05476236.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC
           4200]
 gi|256762846|ref|ZP_05503426.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3]
 gi|256853430|ref|ZP_05558800.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8]
 gi|257079296|ref|ZP_05573657.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1]
 gi|257087121|ref|ZP_05581482.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6]
 gi|294779802|ref|ZP_06745189.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           PC1.1]
 gi|255968418|gb|EET99040.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2]
 gi|256598917|gb|EEU18093.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC
           4200]
 gi|256684097|gb|EEU23792.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3]
 gi|256711889|gb|EEU26927.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8]
 gi|256987326|gb|EEU74628.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1]
 gi|256995151|gb|EEU82453.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6]
 gi|294453176|gb|EFG21591.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           PC1.1]
 gi|295113194|emb|CBL31831.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus sp. 7L76]
 gi|323481052|gb|ADX80491.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis 62]
          Length = 445

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 97/305 (31%), Gaps = 40/305 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    
Sbjct: 105 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG-DGTGHGEPDADFFAFEACEYRRHF 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+Y                                 TN+  DH DY+++ +  F+A  + 
Sbjct: 164 LAY--------------------------SPDYAIMTNIDFDHPDYYKSIEDVFSA-FQT 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
               + K   A  Y DD Y +++      +   V   G  +   I  + +          
Sbjct: 197 MAHQVKKGIFA--YGDDKYLRQL-----ESEVPVYYYGVSEEDDIQARNIQRTTEGSSFD 249

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +      F+ P  G   + NAL    +     +D   V E +     V  RF     
Sbjct: 250 VYHKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKV 309

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     I  DYAH    ++  +    +      II VF                 ALDLA
Sbjct: 310 SDM--IIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLA 367

Query: 411 DIAIV 415
           D   +
Sbjct: 368 DEVFL 372


>gi|59801227|ref|YP_207939.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|194098558|ref|YP_002001620.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239998940|ref|ZP_04718864.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae 35/02]
 gi|240014150|ref|ZP_04721063.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae DGI18]
 gi|240016585|ref|ZP_04723125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae FA6140]
 gi|240112858|ref|ZP_04727348.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae MS11]
 gi|240115614|ref|ZP_04729676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID18]
 gi|240117907|ref|ZP_04731969.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID1]
 gi|240121712|ref|ZP_04734674.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID24-1]
 gi|240123466|ref|ZP_04736422.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID332]
 gi|254493727|ref|ZP_05106898.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Neisseria
           gonorrhoeae 1291]
 gi|260440574|ref|ZP_05794390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae DGI2]
 gi|268594786|ref|ZP_06128953.1| hypothetical protein NGBG_01077 [Neisseria gonorrhoeae 35/02]
 gi|268598939|ref|ZP_06133106.1| hypothetical protein NGFG_00913 [Neisseria gonorrhoeae MS11]
 gi|268601293|ref|ZP_06135460.1| hypothetical protein NGGG_00951 [Neisseria gonorrhoeae PID18]
 gi|268603618|ref|ZP_06137785.1| hypothetical protein NGHG_00279 [Neisseria gonorrhoeae PID1]
 gi|268682094|ref|ZP_06148956.1| hypothetical protein NGJG_01073 [Neisseria gonorrhoeae PID332]
 gi|291043877|ref|ZP_06569593.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso [Neisseria
           gonorrhoeae DGI2]
 gi|293399087|ref|ZP_06643252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria gonorrhoeae F62]
 gi|59718122|gb|AAW89527.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|193933848|gb|ACF29672.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945]
 gi|226512767|gb|EEH62112.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268548175|gb|EEZ43593.1| hypothetical protein NGBG_01077 [Neisseria gonorrhoeae 35/02]
 gi|268583070|gb|EEZ47746.1| hypothetical protein NGFG_00913 [Neisseria gonorrhoeae MS11]
 gi|268585424|gb|EEZ50100.1| hypothetical protein NGGG_00951 [Neisseria gonorrhoeae PID18]
 gi|268587749|gb|EEZ52425.1| hypothetical protein NGHG_00279 [Neisseria gonorrhoeae PID1]
 gi|268622378|gb|EEZ54778.1| hypothetical protein NGJG_01073 [Neisseria gonorrhoeae PID332]
 gi|291012340|gb|EFE04329.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso [Neisseria
           gonorrhoeae DGI2]
 gi|291610501|gb|EFF39611.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria gonorrhoeae F62]
 gi|317164231|gb|ADV07772.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 458

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 102/316 (32%), Gaps = 18/316 (5%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +           G      H  ++
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDKGCWTPVEKFGTG------HGWQI 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 261 GEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDVQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIV 415
                 +L  AD    
Sbjct: 380 KSALPASLKEADQVFC 395


>gi|227550457|ref|ZP_03980506.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257897140|ref|ZP_05676793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|293377364|ref|ZP_06623568.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
 gi|227180358|gb|EEI61330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257833705|gb|EEV60126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|292644056|gb|EFF62162.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
          Length = 453

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 109/282 (38%), Gaps = 28/282 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   HIDYH T++ Y  AK  L + +  ++   + 
Sbjct: 168 MELSSFQLM--GITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +       E+ + A     RVL    +   +        AI+ K++  + +         
Sbjct: 226 WN----QSELQELAQRTKARVLPFSTKEVLEDGVYADDHAIYYKKEKIMEIS------EL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-A 363
            +PG   V NAL A  +    G+ +  + + L   H VP R ++VG   +G + Y D  A
Sbjct: 276 GVPGTHNVENALAAITVAKLYGVSNEAIRQTLHLFHGVPHRTQYVG-EIQGRKFYNDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + +M L    T      +V+   G DR      ++  +    A I          +
Sbjct: 335 TNILATKMALSGFET----AKVVLLAGGLDRGNTFDELVPSLKGIKAMIVF-------GQ 383

Query: 424 DPEK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             EK I A    GI   +   +  +A+  A+E     DV+++
Sbjct: 384 TKEKLIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILL 425


>gi|307272893|ref|ZP_07554140.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855]
 gi|306510507|gb|EFM79530.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855]
          Length = 456

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 97/305 (31%), Gaps = 40/305 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    
Sbjct: 116 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG-DGTGHGEPDADFFAFEACEYRRHF 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+Y                                 TN+  DH DY+++ +  F+A  + 
Sbjct: 175 LAY--------------------------SPDYAIMTNIDFDHPDYYKSIEDVFSA-FQT 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
               + K   A  Y DD Y +++      +   V   G  +   I  + +          
Sbjct: 208 MAHQVKKGIFA--YGDDKYLRQL-----ESEVPVYYYGVSEEDDIQARNIQRTTEGSSFD 260

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +      F+ P  G   + NAL    +     +D   V E +     V  RF     
Sbjct: 261 VYHKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKV 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     I  DYAH    ++  +    +      II VF                 ALDLA
Sbjct: 321 SDM--IIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLA 378

Query: 411 DIAIV 415
           D   +
Sbjct: 379 DEVFL 383


>gi|262166446|ref|ZP_06034183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM223]
 gi|262026162|gb|EEY44830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM223]
          Length = 440

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 144/399 (36%), Gaps = 57/399 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L          T I VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLATGIPVVGDI-----ELFAWHVDKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKTAVGGNIGVPA--------------------LDLISPEVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           ADD  +       H A  +V++ G +   +  +   A H  ++   + +          L
Sbjct: 215 ADDMQTFP----DHAAHLQVVTFGVE---LPAQFSVAEHQGREYLFARDNAVLASSELSL 267

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+
Sbjct: 268 VGRHNVANVLTVLALLDSAGVNVRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN 326

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTDDNPRSEDP 425
            +  +   +   I     ++V G G   D     PI   + L L    +  D        
Sbjct: 327 VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPIFATLPLQLCCFGVDGD-------- 378

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + +   P      +    IR+    L   D++++
Sbjct: 379 -----KFMPLHPSARFYDSMESIIRSIRPELKSGDMVLL 412


>gi|242373469|ref|ZP_04819043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348832|gb|EES40434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
          Length = 449

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 131/351 (37%), Gaps = 44/351 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S             YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSVLTGRLSGNIGYVASKVAQEARP---DEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+T + Y NAK +++
Sbjct: 168 SSFQLLGIEKY-----------------KPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   + +    Q      ++V  I+ K    + 
Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLKAKTMYFSTQ------QEVDGIYIKDGFIVY 259

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +  +     LPGE  + N L A    I  G+    +++ L     +  R +++GTN 
Sbjct: 260 NGIRIINVKDLVLPGEHNLENILAAVLAAILAGVPVKAIVDSLTTFSGIDHRLQYIGTNR 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                Y + +  +N+L      + +     I +    G DR      ++  +  +   I 
Sbjct: 320 TNK--YYNDSKATNTLATQF-ALNSFKQPIIWLC--GGLDRGNDFDELIPYM--NNVRIM 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +V       E  EK            I+  +  +A+    E++   DV+++
Sbjct: 373 VV-----FGETQEKFAKLGNSQGKYVIKATDVEDAVDKIQEVIEPNDVVLL 418


>gi|23465885|ref|NP_696488.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum
           NCC2705]
 gi|227547557|ref|ZP_03977606.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|44888221|sp|Q8G4Q4|MURC_BIFLO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|23326588|gb|AAN25124.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum
           NCC2705]
 gi|227211967|gb|EEI79863.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 512

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 125/428 (29%), Gaps = 65/428 (15%)

Query: 82  FSATIRSNTPILVVDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V  +           + A  + GK     + V G  GK++ +S +  I
Sbjct: 90  YSSAIKPDNPEIVAAHAAGKRIVHRSDILALLMNGK---RAVTVAGAHGKTTTSSMLSHI 146

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G       P+  I  F Q      P    L    +      V        S     
Sbjct: 147 LVNAGAD-----PSYAIGGFIQG-----PDGTTLDGGHAGKGDILVAEADESDGSFA--- 193

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN   DH+D++  +  Y  A               II  DD     V
Sbjct: 194 ----KYHPTIAIITNCEADHLDHYGDEAHYRAA---FVAHAGRATGHVIISIDDPDGLAV 246

Query: 257 MKRAH-NAGCRVLSVGYQGK------------FIHLKKVCAIHNKQQVTISVEG------ 297
           ++    +     ++ G   +            +I  +   A    +Q+T+ +        
Sbjct: 247 LEALPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGVEQLTLHLPAAVTAGE 306

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A    + +G+  A   +          RF+  GT  +  
Sbjct: 307 PVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAKAAGTFLGAARRFQVRGTVKQ-V 365

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R      I V+F                 +L  AD  I+
Sbjct: 366 TVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAKSLAKADDVII 425

Query: 416 TDDNPRSED--------PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
           T   P  E         P  I  +   G+             +   A +      +  DV
Sbjct: 426 TGIFPAREKQADFPDISPSTIV-DAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAHHGDV 484

Query: 462 LVVAGKGH 469
           +   G G 
Sbjct: 485 IFTVGAGD 492


>gi|332139619|ref|YP_004425357.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549641|gb|AEA96359.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 452

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 130/412 (31%), Gaps = 48/412 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A+++G      + A           ++ P  ++DN  K                ++ 
Sbjct: 67  IGNAMSRG------NPAVEYVLNRNLPYTSGPQWLLDNLLK-------------DRWVIG 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           ++GT GK++ +S V  I + +GL+   +     +      +     SP ++ +A  Y S+
Sbjct: 108 LSGTHGKTTTSSMVAWILEHAGLNPGYL--IGGVPENFGVSARVGDSPFFVIEADEYDSA 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                                  +       NL  DH D      A    +      ++P
Sbjct: 166 FFDKRSKFVHY------------RPKTLVINNLEFDHADIFADLAAI-QTQFHHLVRMVP 212

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    +   +    ++++KR   +  + L     GK  H + +       +  +   G  
Sbjct: 213 ENGLILTPNNTPSIEDMLKRGCWSSRQSL-----GKEWHAELLKKD--GSEFNVLHNGVI 265

Query: 300 F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                + L G+  V N L+A       G+     ++ L     V  R E V     G  +
Sbjct: 266 VGTVNWSLVGQHNVDNGLMAIAAAHHAGVTLTDAIDALSLFKNVKRRME-VKGEVNGITL 324

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVT 416
           Y D+AH   ++   L  +R       I+                  +A     AD   + 
Sbjct: 325 YDDFAHHPTAIATTLDGLRKKVGNARILAVLEPRSNTMKMGIYKDTLANSWQKADEVYLY 384

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  P   D   +   + H            + ++    +    D ++V   G
Sbjct: 385 E--PEGMD-WSLVDSVAHSNAPTQCFKGVEKIVQGVCNVAQPGDHILVMSNG 433


>gi|332638562|ref|ZP_08417425.1| UDP-N-acetylmuramate--L-alanine ligase [Weissella cibaria KACC
           11862]
          Length = 446

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 89/302 (29%), Gaps = 37/302 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG  +       D R          +     
Sbjct: 109 IGVAGAHGKTSTTGLLAHVLAGIAPTSYLIGDGT--GKGVPDARFFIFEADEYRRHFQDY 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+       +A    F   
Sbjct: 167 -------------------------TPDYAIMTNIDFDHPDYYTGVDDVRSA-FEDFGNH 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K   A  + DD    ++ K   +          +    + K +          +    
Sbjct: 201 VKKGIFA--WGDDE---QLRKMQVDVPVYFYGTNPETDDFYAKDIKRSTTGSSFDVYYHD 255

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +   +F  PL G+  V N+L    +     ID  LV + L     V  RF          
Sbjct: 256 EFLGNFEVPLFGQHGVLNSLAVIAVAYFEKIDGDLVRKELLSFKGVKRRFTEKQVG--PV 313

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I  DYAH  + +   L   R    GR ++ VF                 +L+LAD   +
Sbjct: 314 TIIDDYAHHPSEITATLDAARQKYPGRELVAVFQPHTFSRTIAYQDDFAKSLELADKVYL 373

Query: 416 TD 417
           T+
Sbjct: 374 TE 375


>gi|229545504|ref|ZP_04434229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1322]
 gi|307268256|ref|ZP_07549640.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248]
 gi|307275646|ref|ZP_07556787.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134]
 gi|307280524|ref|ZP_07561573.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860]
 gi|307295969|ref|ZP_07575801.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411]
 gi|229309420|gb|EEN75407.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1322]
 gi|306496300|gb|EFM65879.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411]
 gi|306504072|gb|EFM73288.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860]
 gi|306507751|gb|EFM76880.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134]
 gi|306515416|gb|EFM83947.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248]
 gi|315025920|gb|EFT37852.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2137]
 gi|315028958|gb|EFT40890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4000]
 gi|315033232|gb|EFT45164.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0017]
 gi|315143492|gb|EFT87508.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2141]
 gi|315147575|gb|EFT91591.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4244]
          Length = 456

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 97/305 (31%), Gaps = 40/305 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    
Sbjct: 116 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG-DGTGHGEPDADFFAFEACEYRRHF 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+Y                                 TN+  DH DY+++ +  F+A  + 
Sbjct: 175 LAY--------------------------SPDYAIMTNIDFDHPDYYKSIEDVFSA-FQT 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
               + K   A  Y DD Y +++      +   V   G  +   I  + +          
Sbjct: 208 MAHQVKKGIFA--YGDDKYLRQL-----ESEVPVYYYGVSEEDDIQARNIQRTTEGSSFD 260

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +      F+ P  G   + NAL    +     +D   V E +     V  RF     
Sbjct: 261 VYHKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKV 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     I  DYAH    ++  +    +      II VF                 ALDLA
Sbjct: 321 SDM--IIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLA 378

Query: 411 DIAIV 415
           D   +
Sbjct: 379 DEVFL 383


>gi|297588289|ref|ZP_06946932.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
 gi|297573662|gb|EFH92383.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
          Length = 441

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 136/386 (35%), Gaps = 41/386 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           S  IR + P+++  N            A R++      I+A+TGT+GK++  S + ++  
Sbjct: 64  SPGIRMDNPVILKANELNIEVVSDLELAQRIFEDI--KIVAITGTNGKTTTTSLMTKMLN 121

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            SG  +  IG          +   +     ++                +E SS  L+   
Sbjct: 122 DSGRKAISIGNIGV--GMLWEIYNSDKDTYFV----------------IECSSFQLES-- 161

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               K       N+  DHID+H + Q Y NAK  + +    +    ++  DD Y +E  K
Sbjct: 162 TKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLKNQ-DENCYTVLNVDDEYYEECKK 220

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +    V +     K   +K      +       ++ KD      L G     N L  
Sbjct: 221 FTKSNVYDVSTSTDVKKGSFIKDDSIYFSDSDCNKIIDLKD----VKLIGYHNYQNVLFC 276

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L   IGI+   + + L     V  R EFV   S G + Y D   T+  ++  +K I +
Sbjct: 277 VTLAKLIGINDDSIRQTLMSFSGVEHRLEFVRELS-GVKYYNDSKGTN--VDASVKAIES 333

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                 +++   G D+                 + ++       E   +      +G   
Sbjct: 334 FDKN--VIILAGGYDKKVSLDNFFIAGKDKFKALILMGQTRDLFEKKAR-----EYGFGN 386

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  +A+  A ++    DV+++
Sbjct: 387 IFLVDDMKQAVTQANKIAESGDVVLL 412


>gi|73542546|ref|YP_297066.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia eutropha JMP134]
 gi|72119959|gb|AAZ62222.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia eutropha JMP134]
          Length = 457

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 118/361 (32%), Gaps = 34/361 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++  S +  I + +G +   +     +    Q+  ++           + 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILEDAGYNPGFL-----VGGVPQNFGIS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           ++      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 VTESDFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLDAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P +   ++   +A    V++R   +      VG                K    + 
Sbjct: 208 VRTVPGQGRLVVNGLEASLARVIERGCWSEVEQFGVG----DWRESDAGTDDGKDAFDVW 263

Query: 295 V-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +       + L G     NAL A      +G+  A  +E L +   V  R E  G  +
Sbjct: 264 FGDAVQGRVSWDLQGTHNRMNALAAIAAARHVGVPVAQAIESLGRFANVKRRMEVRGVAA 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLAD 411
            G  +Y D+AH   +++  L  +R    G  I+              +  +   +L+ AD
Sbjct: 324 -GVTVYDDFAHHPTAIQTTLDGLRRRVGGARILAVLEPRSNTMKLGVMKAQLPASLEQAD 382

Query: 412 IAIV----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +       +  +    D     A +      F + G  +EA+R A       D ++V   
Sbjct: 383 LVFGYGAPSGKDALGWDLAGALAPLGKKAAAFHDLGALVEAVRAA---AQPGDQVLVMSN 439

Query: 468 G 468
           G
Sbjct: 440 G 440


>gi|332531947|ref|ZP_08407831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038574|gb|EGI75017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 444

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 146/398 (36%), Gaps = 59/398 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S   SL+  +     N  + V+ +   F  +        + + ++AVTG++GKS+V 
Sbjct: 75  IIISPGLSLKIPAVANAINAGVEVIGDVELFARI--------NTKPVVAVTGSNGKSTVV 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +   ++ + +G      G   T                    A+  L +       +E S
Sbjct: 127 TLAYEVLKEAGYKVALGGNIGT--------------------AVLDLLNDDFDVYVLELS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD      +K ++ +  N+  DH+D + + QAY ++K+ +++         ++ ADD
Sbjct: 167 SFQLD--TTTSLKPVSATVLNVSEDHLDRYDSYQAYIDSKLSIYDG----AELIVVNADD 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPG 308
             +  V          ++S G Q    HL +     +  +    ++G  F       + G
Sbjct: 221 IQTHPV----ERGTTPLISFGAQQGDYHLAQ-----HNGETHFMLKGDAFLPVDTLAVVG 271

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +    N L    L     +  A     L + + +  R +FV     G + + D   T+  
Sbjct: 272 KHNYLNTLAVMALLSPFEVSKAQYKNALGQFNGLAHRCQFV-AELNGVKYFNDSKATN-- 328

Query: 369 LEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +   +  I ++   G  ++V   G  +      +   I   +  +     D         
Sbjct: 329 VGATIAAIDSLASDGENLIVIAGGDAKGADLNALKPYIEQHVKALICFGKD--------- 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +++           N  EA+  A  + +  +++++A
Sbjct: 380 -ASDLAAITNKSYLTNNMEEAVALANVLSSTGNIVLLA 416


>gi|298488533|ref|ZP_07006563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156874|gb|EFH97964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 448

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 124/352 (35%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+ S  +L  L +   +  R +++     
Sbjct: 259 FENLMPVRELKVRGAHNQANALAALALGHAVGLPSDAMLASLREFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           GG  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 GGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSALRAPVAEHCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +P  +       A+  + ++  + D +++
Sbjct: 376 VLL------GRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLAQRGDAVLL 420


>gi|104783455|ref|YP_609953.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           entomophila L48]
 gi|95112442|emb|CAK17169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           entomophila L48]
          Length = 448

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 122/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 85  ALQQAAARGVTLSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAQAGKRVAVGGNL 144

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T +                      L    V    +E SS  L+    D +     +  
Sbjct: 145 GTPA--------------------LDLLDDSVELYVLELSSFQLE--TTDQLNAEVATVL 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +      +     S 
Sbjct: 183 NISEDHMDRYSGLPAYHLAKHRIFRG----ARQVVVNRQDALSRPLPVEGRPSW----SF 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 235 GLNAPDFKAFGLREVDGEKHLAFEFQTLMPVRELKIRGAHNQSNALAALALGHAAGLPFE 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V     G   Y D   T+    +             +V+   
Sbjct: 295 PMLEALREFKGLAHRCQWV-RERNGVNWYDDSKATNVGAALAAIEGLGADIEGKLVLIAG 353

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G  +      +   +A     + ++        D E++   +   +P    K    EA++
Sbjct: 354 GDGKGADFAALREPVAQHCRAVVLL------GRDAERLAETLGDTVPQVRVKT-LDEAVQ 406

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 407 RCAELAQPGDAVLL 420


>gi|149181058|ref|ZP_01859558.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1]
 gi|148851145|gb|EDL65295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1]
          Length = 443

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 121/360 (33%), Gaps = 52/360 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + + +  +S+ IG  +                    K   Y 
Sbjct: 111 VAVTGAHGKTSTTGLLSHVIRGAKPTSYLIGDGTGKG----------------EKDAEYF 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +     S H                 TN+  DH DY       F A    F+E+
Sbjct: 155 VFEACEYRRHFLSYH-----------PDYAIMTNIDFDHPDYFANVDDVFQA----FQEM 199

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295
             +    II   DD + +++  +       VL  G+ +      + V          + V
Sbjct: 200 AMQVKKGIIACGDDEHLQKIQAKVP-----VLFYGFAEENDFQARNVNKTPEGTTFDVFV 254

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             + F  F  P  G+  + NAL    LC    ID+ +V E L     V  RF       +
Sbjct: 255 RNEFFATFSIPGYGDHSIMNALSVIALCHYEDIDTEIVKERLTSFQGVKRRFSEKKIGEQ 314

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +++ ++  R       II VF                 +L  AD  
Sbjct: 315 --ILIDDYAHHPTEIKVTIEAARQKFPDREIIAVFQPHTFTRTQTFLNEFADSLSEADQV 372

Query: 414 IVTDDN-PRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + +      E+  K+  + + G       I++ +          M +++ VL+  G G 
Sbjct: 373 YLCEIFGSARENHGKLSIDDLKGKIENAKIIDEHDTKP------LMAHEKGVLIFMGAGD 426


>gi|85058335|ref|YP_454037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Sodalis glossinidius str.
           'morsitans']
 gi|84778855|dbj|BAE73632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 455

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 113/357 (31%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +     +      +      P ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMVAWILEEFGYQPGFV--IGGVPGNFAVSARLGDGPFFVVEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               N+  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNMEFDHADIFDDLKAIQKQFHHLI 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+  +D   K  +  A          G +G     KKV    +  +V + 
Sbjct: 209 -RLVPGKGKIILPDNDVNLKHTV--AMGCWSETEYTGEEG-VWRAKKVAPDASGFEVFLH 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E       + L GE  ++NAL+A      +G+  A     L+       R E  GT   
Sbjct: 265 YE-PVGTVNWQLVGEHNMHNALMAVAAVRHVGVQPADACRALDGFINARRRLELKGT-VN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
           G  +Y D+AH   ++   L  +R+   G  RII V          G        +L  AD
Sbjct: 323 GVTMYDDFAHHPTAILATLAALRSKVGGTARIIAVLEPRSNTMKMGLSKNELAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +         P ++       +       +    +   ++     D ++V   G
Sbjct: 383 EVFLYQPQ---HIPWQVSEVAEACVQPAHCSADVDTLVEMVVKTAQPGDYILVMSNG 436


>gi|296454431|ref|YP_003661574.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183862|gb|ADH00744.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 512

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 125/428 (29%), Gaps = 65/428 (15%)

Query: 82  FSATIRSNTPILVVDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V  +           + A  + GK     + V G  GK++ +S +  I
Sbjct: 90  YSSAIKPDNPEIVAAHAAGKRIVHRSDILALLMNGK---RAVTVAGAHGKTTTSSMLSHI 146

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G       P+  I  F Q      P    L    +      V        S     
Sbjct: 147 LVNAGAD-----PSYAIGGFIQG-----PDGTTLDGGHAGKGDILVAEADESDGSFA--- 193

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN   DH+D++  +  Y  A               II  DD     V
Sbjct: 194 ----KYHPTIAIITNCEADHLDHYGDEAHYRAA---FVAHAGRATGHVIISIDDPDGLAV 246

Query: 257 MKRAH-NAGCRVLSVGYQGK------------FIHLKKVCAIHNKQQVTISVEG------ 297
           ++    +     ++ G   +            +I  +   A    +Q+T+ +        
Sbjct: 247 LEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGIEQLTLHLPAAVTAGE 306

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A    + +G+  A   +          RF+  GT  +  
Sbjct: 307 PVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAAKAAGTFLGAARRFQVRGTVKQ-V 365

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R      I V+F                 +L  AD  I+
Sbjct: 366 TVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAESLAKADDVII 425

Query: 416 TDDNPRSED--------PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
           T   P  E         P  I  +   G+             +   A +      +  DV
Sbjct: 426 TGIFPAREKQTDFPDISPSTIV-DAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAHHGDV 484

Query: 462 LVVAGKGH 469
           +   G G 
Sbjct: 485 IFTVGAGD 492


>gi|327439195|dbj|BAK15560.1| UDP-N-acetylmuramate-alanine ligase [Solibacillus silvestris
           StLB046]
          Length = 432

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 139/411 (33%), Gaps = 58/411 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +A++  D    +R+    + V    KFL  +++R         +A+TG  GK+S  
Sbjct: 64  VIAGNAFN-DDHPELVRARELGVEVIRYHKFLGEYSNRY------TSIAITGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +                +  +   + L         +  SY   +   +      
Sbjct: 117 GLMSHV----------------VGGYMPTSYLIGDGTGSGKEDASYFVMEACEYRR---- 156

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H L  H            TN+  DH DY  +    ++A  +L  ++       I   DD
Sbjct: 157 -HFLAYH------PDYAIMTNIDFDHPDYFTSIDDVYDAFQQLALQV---NKAIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
              +++      A   V+  G+        + +       +  + V  + +  F  PL G
Sbjct: 207 EQLQKI-----QANVPVVYYGFDPANDFSARNIVKTSEGTEFDVYVRNEFYSKFFIPLFG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N L    LC   G+ + L+ E L     V  RF    T      +  DYAH    
Sbjct: 262 DHTILNTLAVISLCHYEGVPAKLIQERLNTYGGVKRRFT--ETKVGNAILVDDYAHHPTE 319

Query: 369 LEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDP 425
           +   L++ R    GR +V VF                 +L  AD A + D   + R +  
Sbjct: 320 IAATLQSARQKYPGREVVAVFQPHTFTRTKAFLQNFADSLSGADAAYLCDIFGSAREKQG 379

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGHE-TVH 473
           E    ++ + I G          I T ++ L K +  V +  G G      
Sbjct: 380 ELTINDLANLIDGCTVLT-----IET-VDQLKKHENAVFLFMGAGDVHKYQ 424


>gi|289447785|ref|ZP_06437529.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420743|gb|EFD17944.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX
           [Mycobacterium tuberculosis CPHL_A]
          Length = 301

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 90/279 (32%), Gaps = 29/279 (10%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+    +++     K  L  + +P     ++ ADD     + K       RV S
Sbjct: 2   LNVGPAHLGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVVRV-S 59

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               G             + + T+       +    + G+ QV NAL AA + +  G   
Sbjct: 60  RDNTGDVWAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALECGASV 119

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI---- 384
             V   L     V      V T   G  +  D Y    +S+   L+ +  I         
Sbjct: 120 EQVAAALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRR 179

Query: 385 -IVVFGCGGDRDQGKRPIMGKIA-----LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              V G   +  +       +I      LD++ + +V     RS         ++ G  G
Sbjct: 180 SWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWG 236

Query: 439 FIEKGNRIEAIRTAIEMLN-------------KQDVLVV 464
             E      A RTA+ + +               DV++V
Sbjct: 237 SGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLV 275


>gi|255522108|ref|ZP_05389345.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           J1-175]
          Length = 326

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 68/318 (21%), Positives = 117/318 (36%), Gaps = 27/318 (8%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  + ++EA  +   +H L   K      TN+  DH DY ++    FNA    FE L  +
Sbjct: 22  GAEYFALEACEYQ--RHFLAY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETLGKQ 74

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A+    D    E+ K   +        G + +F   K V       +  +   G+  
Sbjct: 75  VKKAVFALGDD--AELRKLTLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHRGEFL 131

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P  G+  V NAL    LC   G+    V + L+    V  RF    T      + 
Sbjct: 132 GSFEIPAYGDHNVLNALSVIALCDYEGLPVEDVKKELKTFEGVKRRFSI--TEKANQVLV 189

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            DYAH  + +   +   R      +++ VF                 +L+LAD   + D 
Sbjct: 190 DDYAHHPSEIRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDI 249

Query: 419 --NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
             + R +      A++ H   G   I++ +  E ++        + V++  G G   V  
Sbjct: 250 FGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKY------PEAVILFMGAG--DVQK 301

Query: 475 VTNGEKKMSVDCDIIREI 492
                +K+ +D +++ E 
Sbjct: 302 FQAAYEKV-LDHEVLTEA 318


>gi|149190166|ref|ZP_01868442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
 gi|148836055|gb|EDL53016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
          Length = 442

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 138/388 (35%), Gaps = 57/388 (14%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVA--IV-GNKEDGHLFIPQAIAQGAEAI 71
           ++ ++       +  +     DSR    G    A  +  G +     F  + + Q A+ I
Sbjct: 20  LSVVNHVSKNHPDVTVR--VMDSRENPPG----AEQLPEGAELHAGSFNTEWLNQ-ADLI 72

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V +   +L            I VV +      LFA        + ++A+TG++GKS+V  
Sbjct: 73  VCNPGIALATPEIQQALEKGIRVVGDIE----LFAWATT----KPVIAITGSNGKSTVTD 124

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               + + +G++    G     +                      L         +E SS
Sbjct: 125 LTGAMAKAAGINVGVGGNIGVPA--------------------LDLLELNADLYVLELSS 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+      +K    +F NL  DH+D +   + Y  AK R+F         A++  D+ 
Sbjct: 165 FQLE--TTYSLKTKVSTFLNLSEDHMDRYHGMEDYAQAKRRIF----FNAEHALVNRDEP 218

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGE 309
            +   +     AG  V + G+  +   ++++       QV +   G+         L G+
Sbjct: 219 ETSPEL-----AGLPVATFGFNEQDFGMREI-----DGQVWLVDNGETIISTDQLRLVGK 268

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NALVA  L    GI+    L  L     +  R + V  + +G +   D   T+ + 
Sbjct: 269 HNWSNALVACALLKLSGINYRKGLACLAAYTGLSHRCQ-VVADEKGVKWVNDSKATNVAS 327

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQG 397
            +   +  T+     ++V G G   D  
Sbjct: 328 TLAALSGLTLEGKLYLLVGGVGKGADFS 355


>gi|262404717|ref|ZP_06081272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
 gi|262349749|gb|EEY98887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
          Length = 440

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATAEIQQVLAVGIPVVGDI-----ELFAWHVDKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F         A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  ++    RA  A  +V++ G +        V     ++ +    E         L 
Sbjct: 215 ADD--TQTFPDRA--AHLQVVTFGVEHAAQF--SVAQHQGREYLFAHDEAVMACDELSLV 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  ++ G +   D   T+ 
Sbjct: 269 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQ-VVVDNHGIKWVNDSKATN- 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D  +   P  
Sbjct: 327 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGDKF-MPLH 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A     +            IR+    L   D++++
Sbjct: 385 SSARFYDSMESI---------IRSIRPQLKSGDMVLL 412


>gi|251788138|ref|YP_003002859.1| UDP-N-acetylmuramate [Dickeya zeae Ech1591]
 gi|247536759|gb|ACT05380.1| UDP-N-acetylmuramate [Dickeya zeae Ech1591]
          Length = 460

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 74/361 (20%), Positives = 123/361 (34%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFV--IGGVPGNFTVSARLGDSPFFVVEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +           S                   NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYS------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+   D + K+VM            VG +G     KKV    +  QV ++
Sbjct: 209 -RLVPGKGRIIVPTHDLHLKQVMGM--GCWSEQELVGEEG-IWKAKKVTTDASVFQVYLN 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +    +  + L GE  ++N L+A      +G+  A     L        R E  GT + 
Sbjct: 265 -DQIVGEVDWNLVGEHNMHNGLMAIAAARHVGVTPAEACRALGGFINARRRLELRGT-AH 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R+   G  RI+ V     +  +          AL  AD
Sbjct: 323 GVSVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGHCKNELAPALGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++       I T +EM        D ++V   
Sbjct: 383 GVFLFQ-------PQHIPWQVAEVADACVQPAWWSADIDTLVEMINKTAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|167945041|ref|ZP_02532115.1| UDP-N-acetylmuramate--L-alanine ligase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 286

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 10/232 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+  +        A    F   LP    A++  DD   + ++ + 
Sbjct: 22  YLQPMLSVVTNIDADHMATYGGDFERLRAAFLEFLHHLPFYGLAVLCIDDPEVRRLLPKV 81

Query: 261 HNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALV 317
                R+ S G+ +   +    V       +  +  EG +        +PG   V NAL 
Sbjct: 82  TR---RIRSYGFSEDADVRAVDVEQQGLTTRFRLECEGWERGQQISLNMPGRHNVLNALA 138

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILK 374
           A  + + +G++ A +   L+    +  RF+  G     +    +  DY H    +   L+
Sbjct: 139 AVAVALELGVEPAAIQRALQSFQGIGRRFQTKGECRCAAGQVLLVDDYGHHPREIAATLQ 198

Query: 375 NIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +     GR IV+ F         ++       L  AD+ ++T+     E P
Sbjct: 199 AVHEGWPGRRIVLAFQPHRFSRTQEQFDDFVQVLSQADVLLLTEVYAAGEAP 250


>gi|283835150|ref|ZP_06354891.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
 gi|291069450|gb|EFE07559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
          Length = 438

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 84/405 (20%), Positives = 150/405 (37%), Gaps = 68/405 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAERELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGINMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-A 363
            L G+    NAL A  L  A G+  A  L+ L     +  RF+ V  N  G R   D  A
Sbjct: 263 TLTGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLV-LNHNGVRWINDSKA 321

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-- 421
               S E  L  +     G + ++   G  +     P+             +T DN R  
Sbjct: 322 TNVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFMPLQR----------YLTGDNIRLY 368

Query: 422 --SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               D  ++ A          +     +A+R     +   D++++
Sbjct: 369 CFGRDGAQLAALRPEAAE---QTETMEQAMRLLAPRVKPGDMVLL 410


>gi|240125711|ref|ZP_04738597.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268684304|ref|ZP_06151166.1| hypothetical protein NGKG_01112 [Neisseria gonorrhoeae SK-92-679]
 gi|268624588|gb|EEZ56988.1| hypothetical protein NGKG_01112 [Neisseria gonorrhoeae SK-92-679]
          Length = 458

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 102/316 (32%), Gaps = 18/316 (5%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P E   +        ++ + +           G      H  ++
Sbjct: 208 LGAI-QTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDKGCWTPVEKFGTG------HGWQI 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 261 GEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDVQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIV 415
                 +L  AD    
Sbjct: 380 KSALPASLKEADQVFC 395


>gi|124009921|ref|ZP_01694587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microscilla marina
           ATCC 23134]
 gi|123984072|gb|EAY24445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microscilla marina
           ATCC 23134]
          Length = 502

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 61/421 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GKS+       +  ++G   F++G    I          
Sbjct: 107 EFAARYTK---AKMIGITGSNGKSTTTLLTHHLLTQAG---FKVGLAGNIG--------- 151

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT- 222
                        +         VE SS  LD       +       N+  DH+D ++  
Sbjct: 152 -------ESFAKQVVDDAYDFFVVEVSSFQLDN--CYEFRPHLSMLINITEDHMDRYENN 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---------------RV 267
              Y  +K ++ ++  P++   +   DDA   E +++                       
Sbjct: 203 INKYIASKFKVIQKQTPED-YFLYNIDDANVTERLQKITEGIVGVSEGEEPAPNRTLPYC 261

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQ------VTISVEGKDFDFL-------FPLPGEFQVYN 314
           L +  +       K  ++    +      +  S  G D            PLPG+  ++N
Sbjct: 262 LPISLKNADPEKAKEQSLSYWDEENGNIVLNFSDRGSDEQKTMTVPVADLPLPGKHNIFN 321

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A++A   C  +G    ++ E L+     P R E V   S    I    +   +S    L 
Sbjct: 322 AMIALQACHILGASPVVLHEGLKNFSNAPHRMEEVAELSEVKFINDSKSTNIDSAFYALD 381

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +I+     R +V    G D+      I   +A  +  +  +  DN      EK+      
Sbjct: 382 SIKMGEDERKLVWIAGGVDKGNDYEKIRDLVAKKVKILICLGLDN------EKLHNTFRE 435

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +   I      EA+  A ++    D ++++     +  +  N E++       +++++ 
Sbjct: 436 TVHVTIRTQQINEAVEQAFDLARPGDTVLLS-PACASYDLFKNYEERGDSFKKAVQKLVR 494

Query: 495 L 495
           L
Sbjct: 495 L 495


>gi|67459026|ref|YP_246650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           felis URRWXCal2]
 gi|75536538|sp|Q4ULT8|MURD_RICFE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|67004559|gb|AAY61485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia felis
           URRWXCal2]
          Length = 449

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 116/318 (36%), Gaps = 43/318 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L    A I  N  I ++ +                  N +AVTGT+GKS+  
Sbjct: 67  IVLSPGIPLTHKIAGIAKNFNIPIISDIDLL-------FEKSKNLNFIAVTGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                     +    +  S  G     +E S
Sbjct: 120 ALISHILNSNGLDYPVAGNIG------------------VPALQAKASKDG---YILELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+  + K+S A I  D+
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMTGYIAAKSKIFDR-MDKDSYAAINIDN 215

Query: 251 AYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y +E+ M        +++         +   V          IS +     F   L G 
Sbjct: 216 YYCREIFMLLQQEQRIKLIPFSVTKILKNGISVVGDKINDN-DISYK---LPFNKNLQGT 271

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N   +  +   IG++S  +LE +     +P R +++G+ +  G  + + +  +N++
Sbjct: 272 HNCENIAASYAVAKIIGVESKKILESISSFQSLPHRMQYIGSINNIG--FYNDSKATNAI 329

Query: 370 EMI-----LKNIRTITSG 382
             +     L NI  +  G
Sbjct: 330 SAVQSIKALDNIYWLAGG 347


>gi|28871545|ref|NP_794164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|38257960|sp|Q87WY3|MURD_PSESM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28854796|gb|AAO57859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331016732|gb|EGH96788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 448

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 117/350 (33%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKFLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWL-RERN 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G   Y D   T+    +          G  +V+   G  +      +   +A       +
Sbjct: 318 GVDYYNDSKATNVGAALAAIEGLGSDIGGKLVLIAGGDGKGADFSGLRAPVAKYCRAAVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D E I   +   +P  I       A   + E+  + D +++
Sbjct: 378 L------GRDAELIAQALGDAVP-LIRVDTVQAAAERSAELAQRGDAVLL 420


>gi|172058258|ref|YP_001814718.1| UDP-N-acetylmuramate--L-alanine ligase [Exiguobacterium sibiricum
           255-15]
 gi|229620035|sp|B1YKE8|MURC_EXIS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171990779|gb|ACB61701.1| UDP-N-acetylmuramate--alanine ligase [Exiguobacterium sibiricum
           255-15]
          Length = 431

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 146/446 (32%), Gaps = 70/446 (15%)

Query: 49  IVGNKEDGHLFIPQAI-AQG-------AEA-----IVVSSAYSLQDFSATIRSNTPILVV 95
           + G+  D H+F   A+ A+G       AE      +++       D     R+    L +
Sbjct: 28  VQGSDIDKHIFTEDALRAKGIPFFPFSAENIKEDQVIIQGNAFGDDHPEIARAKELDLTI 87

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +   FL   A           +A+TG+ GK+S    +  +      ++F IG  +   +
Sbjct: 88  YHYYDFLGHLADEY------RSVAITGSHGKTSTTGLLSHVLSGITPTAFLIGDGT--GA 139

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
              + +          +   Y                          K      TN+  D
Sbjct: 140 GVAEAKAFVFEACEYKRHFLYY-------------------------KPDYAIMTNIDFD 174

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGY-Q 273
           H DY        +A    F+E+  +   AI+   DD + + +      A   +L  G+ +
Sbjct: 175 HSDYFTGIDDVVSA----FQEMAMQVKQAIVACGDDEHLQNL-----QANVPILYYGFGE 225

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 +   +  +     + +    +  FL P  G   V NAL    +C   G++   V
Sbjct: 226 NNDFRAENATSTPDGTSFDVYLRDDFYGTFLIPGFGRHHVLNALSVIAICQYEGLNKEEV 285

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG 391
              L     V  RF    TN     +  DYAH    +   ++   +      ++ +F   
Sbjct: 286 AARLSTFGGVKRRFS--ETNFGSQILVDDYAHHPKEISATIESARKKYPDREVVAIFQPH 343

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIR-AEIIHGIPGF-IEKGNRIEA 448
                         +L  AD   + +      E   ++R  ++   +PG  I   + +  
Sbjct: 344 TYTRLKSFMDDFATSLREADATYLCEIFGSAREQEGQVRVEDLQDKVPGSDILTRDNVSI 403

Query: 449 IRTAIEMLNKQDVLVVAGKGH-ETVH 473
           +R      ++  VL+  G G  +T  
Sbjct: 404 LRK-----HENAVLLFMGAGDIQTYQ 424


>gi|46191054|ref|ZP_00120691.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Bifidobacterium longum DJO10A]
          Length = 474

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 123/373 (32%), Gaps = 45/373 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 93  PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPQHDV 149

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 150 L-----------CVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSKV 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F      +   +  A DA   E+   A  A  CR +    +        +       +  
Sbjct: 197 FHN---AKRAIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSG 253

Query: 293 ISVEGKDFDFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +               V +AL A  L + +G D    L+ L   
Sbjct: 254 VAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSF 313

Query: 340 HVVPGRFEFVGTNS-RGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V   +  GG + +VD +  +N                I +    G  +   
Sbjct: 314 KPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLSSFPAKSVIWI--AGGLAKGSR 371

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              ++   A  +    I+  D  P  E       +I   I   I+  +    +  A+E  
Sbjct: 372 FEDLVKDQAHTIKAAVIIGKDQQPMIEAFASQAPDIPVTI---IDPEDNDTVMDRAVEAC 428

Query: 457 N----KQDVLVVA 465
                  D++++A
Sbjct: 429 GTYTAAGDIVLMA 441


>gi|292492398|ref|YP_003527837.1| UDP-N-acetylmuramate [Nitrosococcus halophilus Nc4]
 gi|291580993|gb|ADE15450.1| UDP-N-acetylmuramate [Nitrosococcus halophilus Nc4]
          Length = 457

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 119/368 (32%), Gaps = 36/368 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ +S +  I + +G      GP   I    +D          L +
Sbjct: 101 QGRWVLAVAGTHGKTTTSSLLAWILEYAGH-----GPGYLIGGVPRD----FGVSAQLGR 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +  ++        +          +R            NL  DH D     +A    +  
Sbjct: 152 SPYFVVEADEYDTAFFDKRSKFVHYR-----PRTLVLNNLEYDHADIFPNLEAIQQ-QFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
                +P     +  A D   + V+  A      V  +G  + K   L       +  + 
Sbjct: 206 YLVRTVPSNGLILAPAGDNALEAVL--AMGCWTPVAPIGMAKEKDCALTAAAVAEDGSRF 263

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  EG       + L G   V N L A G     G+      + LE+   V  R E  G
Sbjct: 264 EVWREGAYQSQVSWSLLGHHNVANGLAAIGAAHHAGVPIEQACQALERFQGVRRRLEVCG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
              +G  +Y D+AH   ++   L  +R  +   R+I V          G        AL 
Sbjct: 324 -KVKGVTVYDDFAHHPTAIAKTLAGLRARVGEARLIAVLEPRSNTMKLGIHKESLAPALT 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE----MLNKQDVLVV 464
           LAD  ++         P  +   +         K +    I+  ++       + D +V+
Sbjct: 383 LADRVLLYQ-------PPDLAWPLAPAFHSLGAKASVFADIQAIVDNLCAHAQEGDHIVI 435

Query: 465 A---GKGH 469
               G GH
Sbjct: 436 MSNGGFGH 443


>gi|325578820|ref|ZP_08148867.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159644|gb|EGC71776.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 475

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 156/456 (34%), Gaps = 78/456 (17%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----------FSATI 86
           R  QAG  IF+        GH        QGA  +VVSSA    +               
Sbjct: 58  RLAQAGAKIFI--------GHQ-AENV--QGASVVVVSSAIHEDNPELIAAKQNRIPVIQ 106

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           R+           + L+      +G      +AV GT GK++  + +  I  ++ L    
Sbjct: 107 RA-----------QMLAEIMRFRHG------IAVAGTHGKTTTTAMISMIYTQAKLDPTF 149

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +      S+          +  YL   ++       + +                ++ + 
Sbjct: 150 VNGGLVKSAG---KNAHLGASRYL---IAEADESDASFL---------------HLQPMV 188

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+D ++       A    F   LP    A++ ADD     +M+     G +
Sbjct: 189 SVVTNIEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDTV---LMELVPQVGRQ 245

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           VL+ G+ +    H++       +   T+    G+  + L  +PG+    NA  A  +   
Sbjct: 246 VLTYGFSEHADYHIEDYEQTGFQGHYTVVCPSGERINVLLNVPGKHNALNATAALAVAKE 305

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT-IT 380
            GI +  +LE L        RF+ +G     +   R+  DY H    + + +K  R    
Sbjct: 306 EGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWG 365

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH 434
             RI+++F                  L   D  I+ D     E P      + +   I +
Sbjct: 366 DKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGETPIVGADSKALCRSIRN 425

Query: 435 -GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
            G    I   +  E +   ++  +   D+++  G G
Sbjct: 426 LGKVDPILVSD-TEQLGDVLDQIIQDGDLILAQGAG 460


>gi|257888485|ref|ZP_05668138.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
 gi|257824539|gb|EEV51471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
          Length = 453

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 109/282 (38%), Gaps = 28/282 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   HIDYH T++ Y  AK  L + +  ++   + 
Sbjct: 168 MELSSFQLM--GITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +       E+ + A     RVL    +   +        AI+ +++  + +         
Sbjct: 226 WN----QSELQELAQRTKARVLPFSTKEVLEDGVYADDHAIYYRKEKIMEIS------EL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-A 363
            +PG   V NAL A  +    GI +  + + L   H VP R ++VG   +G + Y D  A
Sbjct: 276 GVPGTHNVENALAAITVAKLYGISNEAIRQTLHLFHGVPHRTQYVG-EIQGRKFYNDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + +M L    T      +V+   G DR      ++  +    A I          +
Sbjct: 335 TNILATKMALSGFET----AKVVLLAGGLDRGNTFDELVPSLKGIKAMIVF-------GQ 383

Query: 424 DPEK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             EK I A    GI   +   +  +A+  A+E     DV+++
Sbjct: 384 TKEKLIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILL 425


>gi|163751822|ref|ZP_02159038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
 gi|161328307|gb|EDP99468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
          Length = 449

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 139/397 (35%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S   +L         +  I V+ +         +R        ++ +TG++GKS
Sbjct: 67  ASQIVISPGIALDTPEIRAAIDMDIEVIGDV-----ELFARAVKNSSSCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +GL+    G                         +  L    +    +
Sbjct: 122 TVTTLVGEMAKAAGLNYAVGGNIGI--------------------PVLDLLQSPIDLYIL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  IA +  N+  DH+D ++  +AY  AK+ L+++       A+  
Sbjct: 162 ELSSFQLE--TTHSLNCIAATCLNISEDHMDRYRDLEAYRQAKLSLYDQ----SKRALFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D+ ++       N+      V        +K    +H   ++ +S++         + 
Sbjct: 216 REDSLTQPNDPMDQNSFGLTSPV---NDEWGVKDGKIVHGASEI-VSLDD------VAIV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  L    GI+   ++E  +    +  R E V        +    A    
Sbjct: 266 GSHNHANLIAAMALAYHAGIEKESMIEVAKHFTGLAHRCELVANIDAVSYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+ +       I++  G G   D G      +  LD     I        +D +K
Sbjct: 326 ATVAALEGLSEHLGDIILIAGGDGKGADFGPL----EAVLDKVTHLITL-----GKDGDK 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A             +  +A++ A  +    D++++
Sbjct: 377 IAAL----KDNSKRVDSMADAVKQAAGLATAGDIVLL 409


>gi|257899138|ref|ZP_05678791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
 gi|257837050|gb|EEV62124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
          Length = 453

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 62/282 (21%), Positives = 109/282 (38%), Gaps = 28/282 (9%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   HIDYH T++ Y  AK  L + +  ++   + 
Sbjct: 168 MELSSFQLM--GITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +       E+ + A     RVL    +   +        AI+ +++  + +         
Sbjct: 226 WN----QSELQELAQRTKARVLPFSTKEVLEDGVYADDHAIYYRKEKIMEIS------EL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-A 363
            +PG   V NAL A  +    G+ +  + + L   H VP R ++VG   +G + Y D  A
Sbjct: 276 GVPGTHNVENALAAITVAKLYGVSNEAIRQTLHLFHGVPHRTQYVG-EIQGRKFYNDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + +M L    T      +V+   G DR      ++  +    A I          +
Sbjct: 335 TNILATKMALSGFET----AKVVLLAGGLDRGNTFDELVPSLKGIKAMIVF-------GQ 383

Query: 424 DPEK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             EK I A    GI   +   +  +A+  A+E     DV+++
Sbjct: 384 TKEKLIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILL 425


>gi|33861920|ref|NP_893481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|60390532|sp|Q7V0A5|MURD_PROMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33640288|emb|CAE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 116/385 (30%), Gaps = 46/385 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVVS A      +        I+V+                    N + +TGT+GK++V 
Sbjct: 83  IVVSPAIPFDHKTIIKLKERGIVVI-------GEINIAWESLKNINWIGITGTNGKTTVT 135

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I + + L +   G   T       +  +      +   LS    +  TH      
Sbjct: 136 HLLSHILRENNLFAPFAGNIGTPLCEIAYSTKSKNIDW-IVAELSSFQIEIATHC----- 189

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      IK   G +T    DH+D H+T   Y     ++   LL +    I   DD
Sbjct: 190 -----------IKPKIGIWTTFTPDHLDRHKTLDNY----FKIKNSLLKQSEFRIYNYDD 234

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGE 309
            Y KE  K   N      +            +      +   +    K      F L G 
Sbjct: 235 QYLKENFKSLLNGIWITTNPNVSDSDHCDYWIN----NENFIVERREKLLSLKNFKLKGN 290

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L+A      IG+ +  +   L     +P R E +        I    A   +S 
Sbjct: 291 HNTQNLLLAVAAARKIGLSTERIKNALLSYEQLPHRMETIFQRDELEIINDSKATNFDSS 350

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +  I     G  I++   GG    G      KI    A    +       E  + ++
Sbjct: 351 VAGINAI----KGSPIII--SGGRLKNGDSIEWVKIINKKAKAVFL-----FGESSQTLK 399

Query: 430 AEIIHG--IPGFIEKGNRIEAIRTA 452
             I+ G      +   +  E I  A
Sbjct: 400 KLILEGGFKNDILTFNDLSEVINYA 424


>gi|315653163|ref|ZP_07906088.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners ATCC
           55195]
 gi|325911563|ref|ZP_08173971.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners UPII
           143-D]
 gi|315489528|gb|EFU79165.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners ATCC
           55195]
 gi|325476549|gb|EGC79707.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners UPII
           143-D]
          Length = 440

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 107/366 (29%), Gaps = 50/366 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++G+ GK+S    +  +  +   +SF IG   T  +          +  Y    L+Y 
Sbjct: 109 IGISGSHGKTSTTGLLAHVLGQLAPTSFLIG-DGTGKAIKDSRFFVYEADEYRRHFLAY- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY + +  Y +A     E+ 
Sbjct: 167 -------------------------HPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD    ++            + G+          +          +   
Sbjct: 201 --TKKGLFVWGDDTRLNDI-----QVSIPKYTYGFNNTDDFQAYDIQKNITGSTFKVKYH 253

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +   F   L G+  + N      +         LV   L        RF     +   
Sbjct: 254 DIELGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGAKRRFS--EKSYGK 311

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  L+  R    +  ++ +F         +        L  AD A 
Sbjct: 312 INIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQFVEILKTADYAY 371

Query: 415 VTDDN-PRSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV-AGKGHE 470
           VT       E+   I   ++   IP       + I       ++   +D ++V  G G  
Sbjct: 372 VTPIFGSARENHGNISSQDLTKRIPNSEVISLDNIA------DLTKFKDAVLVFMGAGDI 425

Query: 471 TVHIVT 476
           T + V 
Sbjct: 426 TKYEVA 431


>gi|189439042|ref|YP_001954123.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum DJO10A]
 gi|227547554|ref|ZP_03977603.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|322689508|ref|YP_004209242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322691463|ref|YP_004221033.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|226711885|sp|B3DQM9|MURD_BIFLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189427477|gb|ACD97625.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum DJO10A]
 gi|227211964|gb|EEI79860.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|320456319|dbj|BAJ66941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320460844|dbj|BAJ71464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 481

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 123/373 (32%), Gaps = 45/373 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPQHDV 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 157 L-----------CVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSKV 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F      +   +  A DA   E+   A  A  CR +    +        +       +  
Sbjct: 204 FHN---AKRAIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSG 260

Query: 293 ISVEGKDFDFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +               V +AL A  L + +G D    L+ L   
Sbjct: 261 VAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSF 320

Query: 340 HVVPGRFEFVGTNS-RGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V   +  GG + +VD +  +N                I +    G  +   
Sbjct: 321 KPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLSSFPAKSVIWI--AGGLAKGSR 378

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              ++   A  +    I+  D  P  E       +I   I   I+  +    +  A+E  
Sbjct: 379 FEDLVKDQAHTIKAAVIIGKDQQPMIEAFASQAPDIPVTI---IDPEDNDTVMDRAVEAC 435

Query: 457 N----KQDVLVVA 465
                  D++++A
Sbjct: 436 GTYTAAGDIVLMA 448


>gi|315283075|ref|ZP_07871346.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria marthii
           FSL S4-120]
 gi|313613283|gb|EFR87156.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria marthii
           FSL S4-120]
          Length = 461

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 102/283 (36%), Gaps = 24/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 169 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ADD 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 226 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGARD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 279 NILLPGEHNLENVLASVAVAKTLGVSNEEIMRVLETFKGVEHRTQFV-VEWQGRKFYNDS 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++       + I          
Sbjct: 338 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKSLIVF-------G 386

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI       +   A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGI-EVHYVDDVEAAVPVAYRESAPGDIILL 428


>gi|270265035|ref|ZP_06193298.1| hypothetical protein SOD_k00710 [Serratia odorifera 4Rx13]
 gi|270040969|gb|EFA14070.1| hypothetical protein SOD_k00710 [Serratia odorifera 4Rx13]
          Length = 459

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 116/358 (32%), Gaps = 28/358 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYQPGFV--IGGVPGNFDVSARLGGSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +           S                   NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I+  +D + K+VM  A         VG +G +   K      +     + 
Sbjct: 209 -RLVPGKGKIILPDNDNHLKQVM--AMGCWSEQELVGEEGAWRAHK---LTPDASHYEVF 262

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKAGEVKWALVGEHNMHNGLMAIAAARHVGVQPADACAVLGDFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
            G  +Y D+AH   ++   L  +R    G  RI+ V          G        +L  A
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGISKNDLAPSLGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D   +   +     P ++       +       +    +   +      D ++V   G
Sbjct: 382 DEVFLFQPH---HIPWQVAEVAEACVQPAHWSADLGTLVDMIVRTAQPGDHILVMSNG 436


>gi|322831189|ref|YP_004211216.1| UDP-N-acetylmuramate [Rahnella sp. Y9602]
 gi|321166390|gb|ADW72089.1| UDP-N-acetylmuramate [Rahnella sp. Y9602]
          Length = 461

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 109/360 (30%), Gaps = 26/360 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AV GT GK++ A  V  I +  G     +     +    + +     SP  + +
Sbjct: 101 PERWVIAVAGTHGKTTTAGMVTWILEACGYEPGYV--IGGVPGNFEVSARLGNSPFIVLE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+   D   K+VM     +    +      +           +     
Sbjct: 207 LV-RLVPGKGKIILPEHDTPLKQVMAMGCWSEQEFVG---DAENCVWDAKKLTPDSSTFE 262

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + + G+      + L GE  ++N L+A      +G+      + L        R E  G 
Sbjct: 263 VYLHGEAVGQVKWNLVGEHNMHNGLMAIAAARHVGVKPEDACKALGDFINARRRLELRGV 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALD 408
                 +Y D+AH   ++   L  +R+   G  RI+ V          G        +L 
Sbjct: 323 E-NDVSVYDDFAHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKMGMSKNELAPSLG 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            AD   +         P ++     H I       +    +   ++     D ++V   G
Sbjct: 382 RADEVFLLQPQ---HIPWQVAEVAEHCIQPAHWSADVDSLVDMVVKASQPGDHILVMSNG 438


>gi|37527520|ref|NP_930864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|60390525|sp|Q7N145|MURD_PHOLL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|36786955|emb|CAE16029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 436

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 130/398 (32%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L        +N  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVVSPGIALATAVLQAAANAGIEIVGDIELF--------CREATAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +       G     +                      L  +      +
Sbjct: 118 TVTSLVGEMAKAANWQVGVGGNIGLPA--------------------LELLKKSCQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH+D + Q    Y  AK+R++ +        I+
Sbjct: 158 ELSSFQLE--TTYSLNATAAAVLNVTEDHMDRYPQGVSQYRAAKLRIYHQ----AKRCIV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A D  +   M        R +S G       L    A       ++    +       L
Sbjct: 212 NAQDPLTLPEM----GMDSRCVSFGVDCGDYQLDSENAFLKVHNQSLLATNE-----IKL 262

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N LVA  L  A+GI     L  L     +  RF+    N     I    A   
Sbjct: 263 TGRHNYANGLVALALADAVGIPREASLATLTVYPGLDHRFQLARLNKGVRWINDSKATNV 322

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            S    L  +     G + ++   G  +     P+   +  +   +     D    +   
Sbjct: 323 GSTMAALDGLNL--EGTLYLLL-GGDGKSADFSPLKPFLCGNKVQLYCFGRD---GKQLA 376

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++R EI              +AIR     L   D++++
Sbjct: 377 QLRPEIA------TLTETMEQAIRDIAPRLVAGDMVLL 408


>gi|239621165|ref|ZP_04664196.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239515626|gb|EEQ55493.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 474

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 123/373 (32%), Gaps = 45/373 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 93  PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPQHDV 149

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 150 L-----------CVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSKV 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F      +   +  A DA   E+   A  A  CR +    +        +       +  
Sbjct: 197 FHN---AKRAIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSG 253

Query: 293 ISVEGKDFDFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +               V +AL A  L + +G D    L+ L   
Sbjct: 254 VAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSF 313

Query: 340 HVVPGRFEFVGTNS-RGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V   +  GG + +VD +  +N                I +    G  +   
Sbjct: 314 KPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLSSFPAKSVIWI--AGGLAKGSR 371

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              ++   A  +    I+  D  P  E       +I   I   I+  +    +  A+E  
Sbjct: 372 FEDLVKDQAHTIKAAVIIGKDQQPMIEAFASQAPDIPVTI---IDPEDNDTVMDRAVEAC 428

Query: 457 N----KQDVLVVA 465
                  D++++A
Sbjct: 429 GTYTAAGDIVLMA 441


>gi|260220013|emb|CBA27126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 513

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 150/417 (35%), Gaps = 57/417 (13%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           ++L A R    +   +LA+TGT+GK++V S   Q+   +G +    G    I     D  
Sbjct: 116 MALEALRTVRAYQPAVLAITGTNGKTTVTSLTGQLIAHAGKTVAVAG---NIGPTLLDTL 172

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L                +E SS  LD       +  A    N+ +DH+D+H 
Sbjct: 173 TQHLQADTLP-----------DVWVLELSSFQLDAA--GSFEPTAAVVLNVTQDHLDWHG 219

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADD-----------------AYSKEVMKRAHNAG 264
           + QAY  AK R+F +        ++  +D                    +  +    +  
Sbjct: 220 SMQAYAGAKARIFGQ----RGMMVLNREDATVMAMRPEPVRVRLQKPQERAYISFGTDMP 275

Query: 265 CRVLSVGYQG--------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            R    G +         + +   +       ++  I ++         + G     NAL
Sbjct: 276 QRPGDFGIEDVNGMVWLVRALEADETRKRRKDEEEEIHIQRLMPADALRIRGRHNASNAL 335

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  LC + G   A +L  L +    P R E VG        + D   T+  +   +  +
Sbjct: 336 AALALCASAGCALAPILYGLREYRGEPHRVEPVGI-INDVEFFDDSKGTN--VGATVAAL 392

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHG 435
           + + + R I+V   G  + Q   P+   +   +  + ++  D P       IRA + + G
Sbjct: 393 QGLGADRRIIVILGGEGKGQDFAPLAAPVERYVRAVVLIGRDAP------LIRAALELTG 446

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           IP  ++  +   A+  A    +  D ++       +  +  N E +  V CD ++E+
Sbjct: 447 IP-LVDADSMASAVTLANAKAHAGDAVL-MSPACASFDMFKNYEHRAQVFCDAVKEL 501


>gi|115524118|ref|YP_781029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisA53]
 gi|115518065|gb|ABJ06049.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisA53]
          Length = 482

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 119/316 (37%), Gaps = 35/316 (11%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++        + V+ +   F      RL        +A+TGT+GKS+  + +  +
Sbjct: 91  HPAPHWTVLAAREAGVEVIGDVELFCRE---RLRHAPEAPFVAITGTNGKSTTTALIAHL 147

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +++G  +   G   T                     LS    Q      +E SS+ +D 
Sbjct: 148 MRQAGYDTQMGGNIGT-------------------AILSLQPPQNGRVHVIEMSSYQIDL 188

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +    G   N+  DHID H + + Y   K RL   +LP+   AII  DD + +++
Sbjct: 189 --TPSLDPSVGIMLNVTEDHIDRHGSIENYAAVKERLVAGVLPQ-GCAIIGVDDGFGRDM 245

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQV 312
             R   AG  VL V  +G    L     + ++  V ++   +         G        
Sbjct: 246 ADRLERAGQPVLRVSVKGP---LADGIIVEHETIVKVAGGARQEIARIGGIGSLRGLHNA 302

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSNSLE 370
            NA  AA   +A+G+    + + L     +  R E VG    ++G  ++V+ +  +N+ +
Sbjct: 303 QNAACAAAAVLALGVRGETLQQGLRSFPGLAHRMEQVGRQAGNQGATLFVNDSKGTNA-D 361

Query: 371 MILKNIRTITSGRIIV 386
              K + +      I 
Sbjct: 362 ATAKALSSFGDIFWIA 377


>gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD]
          Length = 741

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 109/326 (33%), Gaps = 21/326 (6%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+T KFL   A      H    + +TG++GK+ V  ++ Q           I    +
Sbjct: 9   LIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSE------DIRCVKS 62

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             SF                 L+      V    V  S                G  T++
Sbjct: 63  PKSFNSQIG-------LPLSLLNIKPEHKVGIFEVGISEPNEMTTLETIFSPKIGVLTHI 115

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI   ++++   + K+ LF++        I   D+      +   +++   ++S G+
Sbjct: 116 GSAHISNFKSEKHLVDEKISLFKD----SESIIFNGDNILVSNKINTLYSSK-NLISYGF 170

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                          +Q +T+    K F F      E  + N L    +   +   +  +
Sbjct: 171 NKDNNIHISSNWKDRQQPITVQCFDKSFSFPAQQRDEATLSNVLAIIAVMHLLEFSTEKM 230

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FG 389
           +E +  L  V  R E V        I   +    +SL++  + I++    +  ++   F 
Sbjct: 231 IEKINNLKAVEMRLESVNGIKNNLIINDSFNLDLDSLKIAFEFIKSYQKPKKSLIITDFT 290

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIV 415
              D D   + +   I     +   +
Sbjct: 291 EKSDADNLYQEVASLINEQNFNKVFL 316


>gi|254000283|ref|YP_003052346.1| UDP-N-acetylmuramate [Methylovorus sp. SIP3-4]
 gi|253986962|gb|ACT51819.1| UDP-N-acetylmuramate [Methylovorus sp. SIP3-4]
          Length = 457

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 116/368 (31%), Gaps = 20/368 (5%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +     + +LAV GT GK++ +S +  I + +GL+   +     I    Q+  +
Sbjct: 93  QWLAENVLRD--KWVLAVAGTHGKTTTSSMLAWILEYAGLAPGFL-----IGGVPQNFDI 145

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +     S   V       ++    + +    +       NL  DH D    
Sbjct: 146 SARLPGAPRQEPQGRSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 205

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P++   +    +   + V+ R       V + G           
Sbjct: 206 LAAI-ETQFHHLVRTVPQQGLVVANGREESLQRVIAR--GCWTPVETFG---DAHGWHAG 259

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            A        I  E       + L GE    NAL A      +G+   + +  L +   V
Sbjct: 260 AADAEGSFDVIQGEQVLGRVQWNLLGEHNRMNALAALAAARHVGVPVEVGIAALAEFQNV 319

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E  G   +G  +Y D+AH   ++   L+ +R       I+              + 
Sbjct: 320 KRRMEVRG-EVKGITVYDDFAHHPTAITTTLEGLRAKVGASRILAVLEPRSNTMKLGVMK 378

Query: 403 GK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
                +L  AD       N   +  E +  ++        +    +EAI          D
Sbjct: 379 AALPASLKSADRVYCYGANLGWDAAEALH-DMGEIAQVETDMTKLVEAIAR---EARSGD 434

Query: 461 VLVVAGKG 468
            ++V   G
Sbjct: 435 HILVMSNG 442


>gi|28209980|ref|NP_780924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           tetani E88]
 gi|28202415|gb|AAO34861.1| UDP-N-acetylmuramoylalanine-d-glutamate ligase [Clostridium tetani
           E88]
          Length = 464

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 137/414 (33%), Gaps = 43/414 (10%)

Query: 83  SATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           + ++R++ PIL+   +      S          P  +  +TG+ GK++  + +  I +  
Sbjct: 90  TPSMRTDHPILIKAKSEGAYITSEM-EEFIKYCPAKLFCITGSDGKTTTTTLIYNILKTE 148

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G + +  G    I +              +   LS      +                  
Sbjct: 149 GYTVWVGG---NIGNPLFTKIEEIKKDDKVVLELSSFQLMSIKEPIE------------- 192

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  +H+D H+  + Y  AK  +F+    +    +I  D+  +K + +  
Sbjct: 193 -----VALVTNVSPNHLDIHKDMEEYIKAKKNIFKYQ-RENDLLVINEDNKITKSMEEEC 246

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R+L    + K     K  + +  + + I+ +         L G   V N L A  
Sbjct: 247 RG---RLLKFSMKEKL----KEGSFYYNEDLYINEKKVCNVSEVKLKGMHNVENLLAAFS 299

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            C++       + E  +  + V  R EFV             A +       L++     
Sbjct: 300 -CVSEDSSIDSMREVAKNFNGVEHRLEFVKEIQEVKYFNDSIASSPTRTLAALQSF---- 354

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR--SEDPEKIRAEIIHGIPG 438
                V+   GG   +    ++ K  +      I+  D      E  +K+  +    +P 
Sbjct: 355 --DRPVILIAGGYDKKISFEVLAKEGISHIKHLILLGDTKYKIEEAFKKVMRDSSEDLPI 412

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            I   +  EAI  A E     DV+        +  +  N E++ +    IIR +
Sbjct: 413 SIC-NSIEEAINIAKENGESGDVV-TLSPACASFDMFKNFEERGNKFKSIIRNL 464


>gi|60390567|sp|Q899G5|MURD_CLOTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 458

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 137/414 (33%), Gaps = 43/414 (10%)

Query: 83  SATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           + ++R++ PIL+   +      S          P  +  +TG+ GK++  + +  I +  
Sbjct: 84  TPSMRTDHPILIKAKSEGAYITSEM-EEFIKYCPAKLFCITGSDGKTTTTTLIYNILKTE 142

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G + +  G    I +              +   LS      +                  
Sbjct: 143 GYTVWVGG---NIGNPLFTKIEEIKKDDKVVLELSSFQLMSIKEPIE------------- 186

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  +H+D H+  + Y  AK  +F+    +    +I  D+  +K + +  
Sbjct: 187 -----VALVTNVSPNHLDIHKDMEEYIKAKKNIFKYQ-RENDLLVINEDNKITKSMEEEC 240

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R+L    + K     K  + +  + + I+ +         L G   V N L A  
Sbjct: 241 RG---RLLKFSMKEKL----KEGSFYYNEDLYINEKKVCNVSEVKLKGMHNVENLLAAFS 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            C++       + E  +  + V  R EFV             A +       L++     
Sbjct: 294 -CVSEDSSIDSMREVAKNFNGVEHRLEFVKEIQEVKYFNDSIASSPTRTLAALQSF---- 348

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR--SEDPEKIRAEIIHGIPG 438
                V+   GG   +    ++ K  +      I+  D      E  +K+  +    +P 
Sbjct: 349 --DRPVILIAGGYDKKISFEVLAKEGISHIKHLILLGDTKYKIEEAFKKVMRDSSEDLPI 406

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            I   +  EAI  A E     DV+        +  +  N E++ +    IIR +
Sbjct: 407 SIC-NSIEEAINIAKENGESGDVV-TLSPACASFDMFKNFEERGNKFKSIIRNL 458


>gi|225011614|ref|ZP_03702052.1| UDP-N-acetylmuramate/alanine ligase [Flavobacteria bacterium
           MS024-2A]
 gi|225004117|gb|EEG42089.1| UDP-N-acetylmuramate/alanine ligase [Flavobacteria bacterium
           MS024-2A]
          Length = 445

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 116/352 (32%), Gaps = 50/352 (14%)

Query: 82  FSATIRSNTPILVV-----DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           ++A I  N P L+      +  RK  +  A          +LAV GT GK++ ++ +  I
Sbjct: 76  YTAAISENHPQLMYYTVQGNRIRKRATFLADCCKN---SKVLAVAGTHGKTTTSAILTHI 132

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +  S   I     +  F   N              S L  +G   + VEA     D+
Sbjct: 133 FLETEQSFSSI-----MGGFFNGNN-------------SNLIGEGSEFMIVEADE--YDR 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             L  +    G  T++  DH+D +QT++ +  A ++ F   + +                
Sbjct: 173 SFLQ-LYPSIGCITSMDPDHLDIYQTKEEFEAAFIQ-FSSQIEQNRIV------------ 218

Query: 257 MKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYN 314
              A+       + G       +   V          +    G   D LF   G+  + N
Sbjct: 219 ---AYGIPIHGFTYGVDVPADYNAFNVRNTKKGYFFDLKTPKGVYQDILFNQLGKHNIAN 275

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A  +    G+    VL+ L     V  R            +  DYAH    +  +L+
Sbjct: 276 AICAIAMADQAGVPLDAVLKTLYTFPGVYRRMNVF--EWGKAIVVDDYAHHPTEIRKVLE 333

Query: 375 NIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++ +  + +  V+F                  L   D   + +  P  E P
Sbjct: 334 TLKGSFPNQKNCVIFQPHLFSRTQDFMKDFLSVLAAFDEVFLLEIYPAREAP 385


>gi|153214090|ref|ZP_01949224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|153826875|ref|ZP_01979542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
 gi|124115516|gb|EAY34336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|149739291|gb|EDM53547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
          Length = 440

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     S                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKAAVGGNIGVPS--------------------LDLISPDVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 215 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 269 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 327 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 377

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 378 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|262170650|ref|ZP_06038328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           MB-451]
 gi|261891726|gb|EEY37712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           MB-451]
          Length = 440

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 128/352 (36%), Gaps = 44/352 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLAAGIPVVGDI-----ELFAWHVDKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKTAVGGNIGVPA--------------------LDLISPEVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           ADD  +       H A  +V++ G +          A H  ++   + +          L
Sbjct: 215 ADDVQTFP----DHAAHLQVVTFGVEQPAQF---SVAEHQGREYLFARDNAVLASSELSL 267

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+
Sbjct: 268 VGRHNVANVLTVLALLDSAGVNVRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN 326

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTD 417
            +  +   +   I     ++V G G   D     P+   + L L    +  D
Sbjct: 327 VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVFATLPLQLCCFGVDGD 378


>gi|123966762|ref|YP_001011843.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9515]
 gi|158512733|sp|A2BY75|MURD_PROM5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|123201128|gb|ABM72736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 477

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 119/367 (32%), Gaps = 44/367 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V+S A  +   +        I       + L             N + +TGT+GK++V
Sbjct: 82  AVVISPAIPIDHKTIIKLKEKGI-------EVLGEVNIAWESLKNINWIGITGTNGKTTV 134

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + + L +   G   T                 L K    + S+ +  +  E 
Sbjct: 135 THLLSHILRTNNLLAPFAGNIGTP----------------LCKIAYSIKSKNIDWLVAEL 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ ++   L  IK   G +T    DH+D H+T   Y     ++   LL +    I   D
Sbjct: 179 SSYQIEIATL-CIKPKIGIWTTFTADHLDRHKTLDNY----FKIKNSLLKQSEFRIYNYD 233

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPG 308
           D + +E  K          S     K   L       N +   +  +        F L G
Sbjct: 234 DIHLRENFKSLSKGIWITTS----SKQSDLDHCDYWINNEDFIVERQENLLSLKNFKLKG 289

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N L+A      IG+    +   L     +P R E +  +++   I    A   +S
Sbjct: 290 NHNTQNLLLAIAAARKIGLSPEKIKNALLSYEQLPHRMETIYQSNKLEIINDSKATNFDS 349

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
               +K I+         +   GG    G       I    A    +       E  + +
Sbjct: 350 STAGIKAIKGAP------IIISGGKLKSGSYIEWVNIINKKAKAVFL-----FGESSQTL 398

Query: 429 RAEIIHG 435
           +  I+ G
Sbjct: 399 KKLILEG 405


>gi|259501411|ref|ZP_05744313.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus iners DSM 13335]
 gi|302190868|ref|ZP_07267122.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners AB-1]
 gi|259167160|gb|EEW51655.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus iners DSM 13335]
          Length = 440

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 106/366 (28%), Gaps = 50/366 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++G+ GK+S    +  +  +   +SF IG   T  +          +  Y    L+Y 
Sbjct: 109 IGISGSHGKTSTTGLLAHVLGQLAPTSFLIG-DGTGKAIKDSRFFVYEADEYRRHFLAY- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY + +  Y +A     E+ 
Sbjct: 167 -------------------------HPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD     +            + G+          +          +   
Sbjct: 201 --TKKGLFVWGDDTRLNNI-----QVSIPKYTYGFNNTDDFQAYDIQKNITGSTFKVKYH 253

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +   F   L G+  + N      +         LV   L        RF     +   
Sbjct: 254 DIELGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGAKRRFS--EKSYGK 311

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  L+  R    +  ++ +F         +        L  AD A 
Sbjct: 312 INIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQFVEILKTADYAY 371

Query: 415 VTDDN-PRSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV-AGKGHE 470
           VT       E+   I   ++   IP       + I       ++   +D ++V  G G  
Sbjct: 372 VTPIFGSARENHGNISSQDLTKRIPNSEVISLDNIA------DLTKFKDAVLVFMGAGDI 425

Query: 471 TVHIVT 476
           T + V 
Sbjct: 426 TKYEVA 431


>gi|309808297|ref|ZP_07702203.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           01V1-a]
 gi|308168444|gb|EFO70556.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           01V1-a]
          Length = 459

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 107/366 (29%), Gaps = 50/366 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++G+ GK+S    +  +  +   +SF IG   T  +          +  Y    L+Y 
Sbjct: 128 IGISGSHGKTSTTGLLAHVLGQLAPTSFLIG-DGTGKAIKDSRFFVYEADEYRRHFLAY- 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY + +  Y +A     E+ 
Sbjct: 186 -------------------------HPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQ- 219

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD    ++            + G+          +          +   
Sbjct: 220 --TKKGLFVWGDDTRLNDI-----QVSIPKYTYGFNNTDDFQAYDIQKNITGSTFKVKYH 272

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             D   F   L G+  + N      +         LV   L        RF     +   
Sbjct: 273 DIDLGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGAKRRFS--EKSYGK 330

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  L+  R    +  ++ +F         +        L  AD A 
Sbjct: 331 INIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQFVEILKTADYAY 390

Query: 415 VTDDN-PRSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV-AGKGHE 470
           VT       E+   I   ++   IP       + I       ++   +D ++V  G G  
Sbjct: 391 VTPIFGSARENHGNISSQDLTKRIPNSEVISLDNIA------DLTKFKDAVLVFMGAGDI 444

Query: 471 TVHIVT 476
           T + V 
Sbjct: 445 TKYEVA 450


>gi|308094624|ref|ZP_07662988.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AN-5034]
 gi|308093175|gb|EFO42870.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AN-5034]
          Length = 317

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 107/312 (34%), Gaps = 50/312 (16%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L     I      E  + E     R +  G  +F+        GH      + + A  +V
Sbjct: 43  LNEGYEITGSDLSENPVTE-----RLVSKGATVFI--------GHQ--ASNVEK-ASVVV 86

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS+A + ++          I +V    + L+      +G      +AV GT GK++  + 
Sbjct: 87  VSTAINEENPEVMAARELRIPIVRRA-EMLAELMRFRHG------IAVAGTHGKTTTTAL 139

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V QI   +GL    +      S+       ++         ++       + +       
Sbjct: 140 VTQIYSEAGLDPTFVNGGLVKSAGTNARLGSS------RILIAEADESDASFL------- 186

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                    ++ +    TN+  DH+D +             F   LP    AI+  DD  
Sbjct: 187 --------HLQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPV 238

Query: 253 SKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEF 310
            +E++ R      +V++ G+     + ++       + + T+  +G+ + D    +PG  
Sbjct: 239 IRELIPRISR---QVITYGFSDDADVRIENYHQEGQQGKFTVVRKGRANLDITLNIPGRH 295

Query: 311 QVYNALVAAGLC 322
              NA  A  + 
Sbjct: 296 NALNASAAIAVA 307


>gi|291529269|emb|CBK94855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale M104/1]
          Length = 453

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 16/284 (5%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G T    E SS  L+   +D  K    +  N+  DH++ H T + Y  AK     +    
Sbjct: 157 GETVTVAEISSFQLE--TIDTFKPHVSAILNITPDHLNRHHTMENYIRAK-EDITKNQTA 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   ++  +D   +              S     +  +L     I+    V   V   + 
Sbjct: 214 DDYCVLNYEDEVLRNFAAECPAKVIFFSSRSELSEGFYLDGDIIIYAHDGVRDKVIDVN- 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G+    N + A  + I+ G+    ++E L+K   V  R E+V T  RG R Y 
Sbjct: 273 --ELNLLGKHNFENVMAACAMSISFGVPMDKIVEVLKKFKAVEHRIEYV-TEKRGVRFYN 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D   T+   +  ++ IR +    +++  G G D+       +      + ++ ++     
Sbjct: 330 DSKGTNP--DAAIQGIRAMNRPTLLI--GGGYDKQSEYDEWIEAFDGKVKELVLIGQTAD 385

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + E+         HG    ++K    +A+    E     D +++
Sbjct: 386 KIEECAH-----RHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLL 424


>gi|157147488|ref|YP_001454807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           koseri ATCC BAA-895]
 gi|157084693|gb|ABV14371.1| hypothetical protein CKO_03287 [Citrobacter koseri ATCC BAA-895]
          Length = 438

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 146/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAARELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADARCVSFGVNMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +      +   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSSLTRYLGGDRVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     L   D++++
Sbjct: 377 LAALRPEIAE------QTETMEEAMRLLAPRLQPGDMVLL 410


>gi|312132482|ref|YP_003999821.1| murd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773410|gb|ADQ02898.1| MurD [Bifidobacterium longum subsp. longum BBMN68]
          Length = 481

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 123/373 (32%), Gaps = 45/373 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPQHDV 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D + L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 157 L-----------CVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGRENYAADKSKV 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           F      +   +  A DA   E+   A  A  CR +    +        +       +  
Sbjct: 204 FHN---AKRAIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSG 260

Query: 293 ISVEGKDFDFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           ++              +               V +AL A  L + +G D    L+ L   
Sbjct: 261 VAGGAVGESVRLAAITDFAHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSF 320

Query: 340 HVVPGRFEFVGTNS-RGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V   +  GG + +VD +  +N                I +    G  +   
Sbjct: 321 KPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLSSFPAKSVIWI--AGGLAKGSR 378

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              ++   A  +    I+  D  P  E       +I   I   I+  +    +  A+E  
Sbjct: 379 FEDLVKDQAHTIKAAVIIGKDQQPMIEAFASQAPDIPVTI---IDPEDNDTVMDRAVEAC 435

Query: 457 N----KQDVLVVA 465
                  D++++A
Sbjct: 436 GTYTAAGDIVLMA 448


>gi|254556389|ref|YP_003062806.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           JDM1]
 gi|300767141|ref|ZP_07077053.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180361|ref|YP_003924489.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|254045316|gb|ACT62109.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           JDM1]
 gi|300494960|gb|EFK30116.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308045852|gb|ADN98395.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 436

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 112/399 (28%), Gaps = 60/399 (15%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V    +FL               + V GT GK+S    +  +      +S+ IG  + 
Sbjct: 88  LPVYRYHEFLGKLMEGF------TSIGVAGTHGKTSTTGLLSHVLSHIAPTSYLIGDGTG 141

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +         P   +            V +                         TN+
Sbjct: 142 KGT---------PDARFFVFEADEYRRHFVAYH------------------PDYAIMTNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH DY++      +A  + F   + K   A  + DD   + +     +    +   G 
Sbjct: 175 DFDHPDYYKDLADVQSA-FQQFGNQVKKGIFA--WGDDESLRHL-----DVDTPIYYYGT 226

Query: 273 QG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                     +          +    +   +F  PL GE  V N+     +     ++  
Sbjct: 227 NDRDDFQAVNIKRTTKGSSFEVKYHDESLGEFEIPLFGEHNVLNSTAVIAVSYFEKVNLD 286

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG 389
            +   L     V  RF           +  DYAH  + ++  L   R       I+ VF 
Sbjct: 287 EIRRELLDFSGVKRRFSEHQVGDM--VMIDDYAHHPSEIKATLDAARQKYPDKEILAVFQ 344

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHGIPGFIEK--GNR 445
                           +L  AD   +T+  +   E    +   ++   +P   E    + 
Sbjct: 345 PHTFSRTKALMDGFAASLSKADHVFLTNIFSSAREKSGDVSSKDLAAKLPNGGEIITTDD 404

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           + A+ TA        V V  G G      +   EK    
Sbjct: 405 MSAL-TAYHNA----VAVFMGAGD-----IQKYEKIYED 433


>gi|166713309|ref|ZP_02244516.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 452

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 144/416 (34%), Gaps = 36/416 (8%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 49  ALAQGYAPSNISPDATDVVVGNALSRGNPAVEAVLDASRRYTSGAQWLAEQVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A+D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGREFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G+        ++ A        +    + 
Sbjct: 214 ARGRLIVNGEDAHLAEVL--AMGCWTPVERFGFDASLDWSARLIAADGSAFAVLHRGAEV 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A ++  L     V  R E +G ++RG  +Y
Sbjct: 272 GHVQWPLLGRHNVLNGLAALAAVHAVGVDPATLMPALAHFQSVKRRLEVIG-SARGITVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       +VV                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRARVGAARVVVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 389

Query: 418 DNPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAI--RTAIEMLNKQDVLVVAGKG 468
              R E   D   I A++        +      AI  RT  E+    D +V    G
Sbjct: 390 --HRPELAWDAVPIIAQVRGEARVAQDV-----AILLRTLGEIAQPGDHVVFMSNG 438


>gi|117620663|ref|YP_858019.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562070|gb|ABK39018.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 456

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 103/359 (28%), Gaps = 26/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  + + + L    +     +      +     +P ++ +
Sbjct: 101 QDRWVLAVAGTHGKTTTASMLAWVLEYAKLEPGFL--IGGVPGNFPVSARLGSAPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +                               NL  DH D      A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYH------------PRTLVMNNLEFDHADIFPDLAAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +    D     V K        V  VG        K V    +     
Sbjct: 207 LM-RTVPSNGRVLFPKGDENLAAVRKM--GCWSEVELVGQ--DDAQWKAVKLADDGSAFE 261

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G K  +  +   GE  V N L+A       G+     +  L +      R E  G 
Sbjct: 262 VWLDGVKQGEVHWECIGEHNVNNGLMAIAAARHAGVMVEHGIAALCQFKSPKRRMELKGE 321

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
            + G  +Y D+AH   ++E  L  +R       I+            G          D 
Sbjct: 322 VA-GISVYDDFAHHPTAIETTLGGLRAKVGKARILAVLEPRSNTMKLGVHKEELAGCFDG 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD            D  ++ A +      F    +    I   +      D +++   G
Sbjct: 381 ADEVFFFQPPNIGWDLGEVTAHMTRPAKVF---NDLETLINRLVAECRDGDHILIMSNG 436


>gi|326795772|ref|YP_004313592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546536|gb|ADZ91756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
          Length = 449

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 124/354 (35%), Gaps = 44/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+TG++ KS+V + V+ + +  G ++   G                       +  
Sbjct: 109 APFIAITGSNAKSTVTTLVEYLLKSIGKAAIAGGNIG--------------------RPA 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               SQ   +  +E SS  L+      +K       N+  DH+D +    +Y  AK R++
Sbjct: 149 LDTLSQEADYYVLELSSFQLE--TTHALKADVACMLNVSEDHMDRYDDLYSYQRAKQRIY 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                    A+    D  +  ++  + +   R  + G       LK+   + + + V +S
Sbjct: 207 RGC----KSAVCNKQDILTAPLL--SQDTPVRAFTTG----SPDLKEFGLLPDDKGVWLS 256

Query: 295 VEGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGIDSALV--LEHLEKLHVVPGRFEFVG 350
              K         L G   + N L A  +   +G+D  L    + L +   +P R E V 
Sbjct: 257 KGVKPLYHSSEIALKGTHNLANVLAALSILDLLGVDIELPAVAQGLYEFKGLPHRCETVA 316

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G     D   T+    +   N       + I++   G  +D    P+   I     
Sbjct: 317 V-VNGVTYINDSKGTNVGATLAALNGLGDLKRQNIILIAGGEGKDADFSPLSQPI-DKYV 374

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              I+       +D + I   I   +  +   G+  EA+  A     + D++++
Sbjct: 375 KRTIL-----FGKDADLISTSI-SDVSVYSLVGDLSEAVALAKSDAKEGDIVLL 422


>gi|78184101|ref|YP_376536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9902]
 gi|118595699|sp|Q3AZI5|MURD_SYNS9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78168395|gb|ABB25492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9902]
          Length = 462

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 114/388 (29%), Gaps = 43/388 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VV         +        +       +            +    + +TGT+GK++V
Sbjct: 72  AVVVGPGIPWDHPTLNGLRQEGV-------QIRGEIELAWEALNDIPWVGITGTNGKTTV 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +   +G+    +G    +S+     ++           +  LSS  +       
Sbjct: 125 THLLSHVLGHAGIV-APMGGNMGVSAADMALKIRRGETPKPDWLVMELSSYQIEAG---- 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       +    G +T L  DH++ H T +AY   K      LL + S AI   D
Sbjct: 180 ----------PNLAPSIGIWTTLTPDHLERHGTLEAYRAIK----HSLLQRSSLAIFNGD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPL 306
           DA                          H             T+        F   +  +
Sbjct: 226 DADLSAHRPSLKRGMWV-----KAAPPCHDDPPADFWIDDAGTVQAREGGAMFPAKVLAM 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     N L+       IG+++  + + LE    VP R E +G+ S         A   
Sbjct: 281 PGAHNRQNLLLVTAAAAQIGLNAEQIAQGLESFPGVPHRLENLGSTSSADVFNDSKATNY 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++  + L+ +        +VV   G  +       + ++      + +        E   
Sbjct: 341 DAAAVGLQAMA-----GPVVVLAGGQTKRGNATGWLAELKSKACAVVLFGAG--AEELDA 393

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            IR     G        +   A+  A+ 
Sbjct: 394 LIRQSNYQG--QVHRCTDLSAAVAIAVR 419


>gi|289435377|ref|YP_003465249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171621|emb|CBH28167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 455

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 26/285 (9%)

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + ++   ++
Sbjct: 162 EQYISMELSSFQLM--GVKTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHI-QQNQTED 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I  D    K + K+         +    G+  +++          +  + E     
Sbjct: 219 DFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGPR 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D
Sbjct: 272 DSILLPGEHNLENVLASVAVAKTLGVANEEIMHVLETFKGVEHRTQFV-VEWQGRKFYND 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+  +      ++   +   +V+   G DR      ++       A I         
Sbjct: 331 SKATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKALIVF------- 379

Query: 422 SEDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
            E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 380 GETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|189439045|ref|YP_001954126.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium longum DJO10A]
 gi|229486471|sp|B3DQN2|MURC_BIFLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189427480|gb|ACD97628.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium longum DJO10A]
          Length = 512

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 124/428 (28%), Gaps = 65/428 (15%)

Query: 82  FSATIRSNTPILVVDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V  +           + A  + GK     + V G  GK++ +S +  I
Sbjct: 90  YSSAIKPDNPEIVAAHAAGKRIVHRSDILALLMNGK---RAVTVAGAHGKTTTSSMLSHI 146

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G       P+  I  F Q      P    L    +      V        S     
Sbjct: 147 LVNAGAD-----PSYAIGGFIQG-----PDGTTLDGGHAGKGDILVAEADESDGSFA--- 193

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN   DH+D++  +  Y  A               II  DD     V
Sbjct: 194 ----KYHPTIAIITNCEADHLDHYGDEAHYRAA---FVAHAGRATGHVIISIDDPDGLAV 246

Query: 257 MKRAH-NAGCRVLSVGYQGK------------FIHLKKVCAIHNKQQVTISVEG------ 297
           ++    +     ++ G   +            +I  +   A    +Q+T+ +        
Sbjct: 247 LEALPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGVEQLTLHLPAAVTAGE 306

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A    + +G+  A              RF+  GT  +  
Sbjct: 307 PVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAANAAGTFLGAARRFQVRGTVKQ-V 365

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R      I V+F                 +L  AD  I+
Sbjct: 366 TVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAKSLAKADDVII 425

Query: 416 TDDNPRSED--------PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
           T   P  E         P  I  +   G+             +   A +      +  DV
Sbjct: 426 TGIFPAREKQADFPDISPSTIV-DAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAHHGDV 484

Query: 462 LVVAGKGH 469
           +   G G 
Sbjct: 485 IFTVGAGD 492


>gi|56461361|ref|YP_156642.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Idiomarina loihiensis L2TR]
 gi|56180371|gb|AAV83093.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Idiomarina loihiensis L2TR]
          Length = 433

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 122/359 (33%), Gaps = 35/359 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ AS +  I + +G     +     I     +  ++           
Sbjct: 91  RWVLAVAGTHGKTTTASMLAWILEDNGFDPGFM-----IGGVPGNFPVS----------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L+      +  +         R   +          NL  DH D      A       
Sbjct: 135 ARLTDSNFFVIEADEYDTAFFDKRSKFVHYAPDTLILNNLEFDHADIFPDLAAIQRQFAH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P     I+ A D    EV+         V+ +G QG +   +      +  +  
Sbjct: 195 LL-RVVPDTGQVILPAGDKALDEVL--GQGCWSPVVRMGEQGDW---QTKLLKTDGTEFE 248

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + K      + + G   V NA++A      +GI +    + L +      R E +G 
Sbjct: 249 VHYQSKCIAQVSWNVLGTHNVNNAMMAIIAAAHVGIKAEQSAQALNRFRSPKRRMELLG- 307

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDL 409
             RG +++ D+AH  ++++  +  +R       I+            G        +L+ 
Sbjct: 308 EHRGVKVFDDFAHHPSAIKTTVSGLRQHQPDSRIIAVLEPRSNTMKMGVHSDTLVQSLED 367

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   V         PE ++ ++   +P      +  + +   +  +   D +++   G
Sbjct: 368 ADNVFVLQ-------PEGLKWQLAEKMPKAHVFESTDDLLAGLLAEVRAGDAVLIMSNG 419


>gi|119489853|ref|ZP_01622608.1| Cyanophycin synthetase [Lyngbya sp. PCC 8106]
 gi|119454281|gb|EAW35432.1| Cyanophycin synthetase [Lyngbya sp. PCC 8106]
          Length = 605

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 78/363 (21%), Positives = 121/363 (33%), Gaps = 36/363 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + +G     +G T+T  ++  D  +          A   L    V    +EA+ 
Sbjct: 209 LLAHIVKETGS---MVGYTTTDGTYIGDYLVEAGDNTGPQSAQLILCDPTVEIAVLEAAR 265

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+      T +     K  + E ++PK    ++ AD
Sbjct: 266 GGILRSGLGFDTCDVGIVLNVSADHLGLGDIDTVEQLAKVKSVVAESVIPK-GYVVLNAD 324

Query: 250 DAYSKEVMKRAHNAGCRVL------SVGYQGKFIHLKKVCAIHN----KQQVTISVEG-K 298
           D    E+ +R               +V        L  V         K   T+ +E   
Sbjct: 325 DPLVAEMAERTKAQVAYFSMNPENETVLKHTAAGGLAAVYENGYLSILKGDWTLRIEQAV 384

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
           +          F + NAL A     A GI    +   L          PGR      N  
Sbjct: 385 NVPLTMEGKAPFMIANALAACLAAFAQGIKIEHIRAGLSTFVASASQTPGRMNLF--NMG 442

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IA 413
                +DYAH   S E +   +R    G  I V G  GDR       +GK+A ++ D I 
Sbjct: 443 KYHALIDYAHNPASYEALAGFVRNW-EGVRIGVVGGPGDRRDEDFVTLGKLAAEMFDQIV 501

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI-----------EKGNRIEAIRTAIEMLNKQDVL 462
           I  DD+ R  +       I  GI   +              N  EAI T ++      ++
Sbjct: 502 IKEDDDTRGRERGNGADLIREGIEQVLSRVPDPRVSHETILNETEAIETTLDRAPNGGLV 561

Query: 463 VVA 465
           V+ 
Sbjct: 562 VIL 564


>gi|213966569|ref|ZP_03394720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384716|ref|ZP_07233134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059796|ref|ZP_07251337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131743|ref|ZP_07257733.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928419|gb|EEB61963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 448

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 121/350 (34%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKFLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++   + 
Sbjct: 259 FENLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWLRERNG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G      A    +    ++ + +   G+++++   G  +      +   +A       +
Sbjct: 319 VGYYNDSKATNVGAALAAIEGLGSDIGGKLVLI-AGGDGKGADFSGLRAPVAKYCRAAVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D E I   +   +P  I       A   + E+  + D +++
Sbjct: 378 L------GRDAELIAQALGDAVP-LIRVDTVQAAAERSAELAQRGDAVLL 420


>gi|149242346|pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|149242349|pdb|2JFG|A Chain A, Crystal Structure Of Murd Ligase In Complex With Uma And
           Adp
 gi|149242350|pdb|2JFH|A Chain A, Crystal Structure Of Murd Ligase In Complex With L-Glu
           Containing Sulfonamide Inhibitor
 gi|170785037|pdb|2UUO|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|170785038|pdb|2UUP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261087|pdb|2VTD|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261088|pdb|2VTE|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
          Length = 445

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  A +R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|90413038|ref|ZP_01221036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum 3TCK]
 gi|90326053|gb|EAS42492.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum 3TCK]
          Length = 447

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 142/397 (35%), Gaps = 55/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L            I +V +      LFA  +     + ++A+TG++GKS
Sbjct: 69  ADLIVASPGIALATPELVAAKAAGIEIVGDIE----LFARAVT----KPVVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S + ++ + + ++    G                        AL  L+++      +
Sbjct: 121 TVTSLIGEMAKEASINVGVGGNIG-------------------FAALDMLANEH-DLYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++L A  + NL  DH+D +   + Y  AKMR+FE        A+  
Sbjct: 161 ELSSFQLE--TTSSLELKAAVYLNLSEDHMDRYDGIEDYSLAKMRIFEH----AELAVYN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD     +     +   ++ S G+  +   L  +        + +  +         L 
Sbjct: 215 RDD-----LATLPTSFSHKITSFGFDNQDYGLVTLDGEEF---LAVDKQPIMKTNDIALV 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N+L A  L  A+ ID       L++ + +  R + V  N    +   D   T+ 
Sbjct: 267 GRHNVANSLAALALADAVNIDHQAACRALQRYNGLAHRCQLV-VNQHDVKWVNDSKATN- 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L   L  ++ +     + +   G  +      +   +A     +     D         
Sbjct: 325 -LASTLAALKGLNLPGKLHLLVGGDGKGADFSELKPVLADLNVQLYCFGRDG-------- 375

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  +   I      EA+  A +   K D++++
Sbjct: 376 --NQFMSLVDAPICTEAMAEAMTIAADTAQKGDMILL 410


>gi|7245651|pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7245652|pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7546574|pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|157834055|pdb|1UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 117 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  A +R++E         ++
Sbjct: 157 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYEN----AKVCVV 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 211 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 261

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 262 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 321

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 322 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 376 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 409


>gi|309803450|ref|ZP_07697544.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           11V1-d]
 gi|309805369|ref|ZP_07699418.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           09V1-c]
 gi|312870899|ref|ZP_07731004.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           3008A-a]
 gi|312873617|ref|ZP_07733664.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2052A-d]
 gi|329919679|ref|ZP_08276657.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners SPIN
           1401G]
 gi|308164459|gb|EFO66712.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           11V1-d]
 gi|308165296|gb|EFO67530.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LactinV
           09V1-c]
 gi|311090870|gb|EFQ49267.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2052A-d]
 gi|311093589|gb|EFQ51928.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           3008A-a]
 gi|328937331|gb|EGG33755.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners SPIN
           1401G]
          Length = 440

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 106/366 (28%), Gaps = 50/366 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V+G+ GK+S    +  +  +   +SF IG   T  +          +  Y    L+Y 
Sbjct: 109 IGVSGSHGKTSTTGLLAHVLGQLAPTSFLIG-DGTGKAIKDSRFFVYEADEYRRHFLAY- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY + +  Y +A     E+ 
Sbjct: 167 -------------------------HPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD     +            + G+          +          +   
Sbjct: 201 --TKKGLFVWGDDTRLNNI-----QVSIPKYTYGFNNTDDFQAYDIQKNITGSTFKVKYH 253

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +   F   L G+  + N      +         LV   L        RF     +   
Sbjct: 254 DIELGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGAKRRFS--EKSYGK 311

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  L+  R    +  ++ +F         +        L  AD A 
Sbjct: 312 INIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQFVEILKTADYAY 371

Query: 415 VTDDN-PRSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV-AGKGHE 470
           VT       E+   I   ++   IP       + I       ++   +D ++V  G G  
Sbjct: 372 VTPIFGSARENHGNISSQDLTKRIPNSEVISLDNIA------DLTKFKDAVLVFMGAGDI 425

Query: 471 TVHIVT 476
           T + V 
Sbjct: 426 TKYEVA 431


>gi|237729386|ref|ZP_04559867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
 gi|226909115|gb|EEH95033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
          Length = 438

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 84/405 (20%), Positives = 152/405 (37%), Gaps = 68/405 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDERELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGINMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-A 363
            L G+    NAL A  L  A G+  A  L+ L     +  RF+ V  N  G R   D  A
Sbjct: 263 TLTGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLV-LNHNGVRWINDSKA 321

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-- 421
               S E  L  +     G + ++   G  +     P+             +T DN R  
Sbjct: 322 TNVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFMPLQR----------YLTGDNIRLY 368

Query: 422 --SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               D  ++ A +   +    E     +A+R     +   D++++
Sbjct: 369 CFGRDGAQLAA-LRPEVAEHTET--MEQAMRLLAPRVKPGDMVLL 410


>gi|312872185|ref|ZP_07732258.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2062A-h1]
 gi|325913363|ref|ZP_08175730.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners UPII
           60-B]
 gi|311092269|gb|EFQ50640.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners LEAF
           2062A-h1]
 gi|325477289|gb|EGC80434.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus iners UPII
           60-B]
          Length = 440

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 106/366 (28%), Gaps = 50/366 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + ++G+ GK+S    +  +  +   +SF IG   T  +          +  Y    L+Y 
Sbjct: 109 IGISGSHGKTSTTGLLAHVLGQLAPTSFLIG-DGTGKAIKDSRFFVYEADEYRRHFLAY- 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY + +  Y +A     E+ 
Sbjct: 167 -------------------------HPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAEQ- 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    ++ DD     +            + G+          +          +   
Sbjct: 201 --TKKGLFVWGDDTRLNNI-----QVSIPKYTYGFNNTDDFQAYDIQKNITGSTFKVKYH 253

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             D   F   L G+  + N      +         LV   L        RF     +   
Sbjct: 254 DIDLGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGAKRRFS--EKSYGK 311

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  L+  R    +  ++ +F         +        L  AD A 
Sbjct: 312 INIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQFVEILKTADYAY 371

Query: 415 VTDDN-PRSEDPEKI-RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV-AGKGHE 470
           VT       E+   I   ++   IP       + I       ++   +D ++V  G G  
Sbjct: 372 VTPIFGSARENHGNISSQDLTKRIPNSEVISLDNIA------DLTKFKDAVLVFMGAGDI 425

Query: 471 TVHIVT 476
           T + V 
Sbjct: 426 TKYEVA 431


>gi|94311991|ref|YP_585201.1| UDP-N-acetylmuramate [Cupriavidus metallidurans CH34]
 gi|93355843|gb|ABF09932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 477

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 116/362 (32%), Gaps = 34/362 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            LAV GT GK++  S +  I + +G +   +     +    Q+  ++           + 
Sbjct: 123 TLAVAGTHGKTTTTSMLAWILEDAGYNPGFL-----VGGVPQNFGIS-----------AR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 167 LTESDFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLTAI-ETQFHHL 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P E   ++   +     V++R       V   G         K  A   K    I 
Sbjct: 226 VRTVPGEGRLVVNGQEPALARVLER--GCWSEVEQFGVGDWSETDPKTAAPEGKDAFDIW 283

Query: 295 V-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             E      ++ L G     NA+ A      +G+  A  +E L +   V  R E  G   
Sbjct: 284 FREALQGTLVWDLQGTHNRLNAIAAIAAARHVGVPPAQAIESLGRFSNVKRRMEVRGVAG 343

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLAD 411
            G  +Y D+AH   +++  +  +R       I+              +  +   +L  AD
Sbjct: 344 -GVTVYDDFAHHPTAIQTTVDGLRRRVGDARILAVLEPRSNTMKLGVMAAQLPASLREAD 402

Query: 412 IAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +       P  +D       +  A +      F + G  +EA+R A       D ++V  
Sbjct: 403 LVFGYG-APSGKDALGWNLAEALAPLGEKAAAFQDLGTLVEAVRAA---AQPGDQVLVMS 458

Query: 467 KG 468
            G
Sbjct: 459 NG 460


>gi|291003737|ref|ZP_06561710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 479

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 120/358 (33%), Gaps = 43/358 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   LAVTGT+GK++    ++ I +  G+     G                         
Sbjct: 122 PATWLAVTGTNGKTTTVGMLESILRADGVDVVACGNVGL--------------------P 161

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +      G   ++VE SS  L  H    +   A    NL  DH+D+H +  AY  AK R+
Sbjct: 162 VVDAVRAGHRVLAVELSSFQL--HWSQTVAPHASVVLNLAADHLDWHGSLDAYGAAKARV 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +       S A+  ADD +S  +         R +S         +  V +     +   
Sbjct: 220 YAG----NSVAVHNADDEWSVRLADAGAPQQARRVSFTLSDPAPGVLGVESGALVDRAFG 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                         G   V NAL AA L  A G++   V E L        R   V  ++
Sbjct: 276 DRVRLAAVADVHPAGPHNVANALAAASLARAYGVEPEAVAEGLRSFQPGAHRSVVVAESA 335

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A   ++ +  L+         + +    G  +      ++   A  LA + 
Sbjct: 336 GVSYVDDSKATNPHAADAALRA----HPKVVWI--AGGLLKGADVEDLVAANAARLAGVV 389

Query: 414 IVTDDNPRSED------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           ++  D  R  +      P+    E+  G     +    + A+R A E       +V+A
Sbjct: 390 LIGRDRARFAEALARHAPDVPVREVESG-----DDAGMLAAVRLAGEFAEPGCAVVLA 442


>gi|161581989|ref|NP_232033.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|254849525|ref|ZP_05238875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|298500237|ref|ZP_07010042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
 gi|254845230|gb|EET23644.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|297540930|gb|EFH76984.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
          Length = 444

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 73  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 125 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 165 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 219 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 272

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 273 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 330

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 331 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 381

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 382 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 416


>gi|312868758|ref|ZP_07728950.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus oris
           PB013-T2-3]
 gi|311095744|gb|EFQ53996.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus oris
           PB013-T2-3]
          Length = 435

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 95/326 (29%), Gaps = 42/326 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G  GK+S  + +  +      +S+ IG    +     D+R                
Sbjct: 106 IGIAGAHGKTSTTALLSHVLAAVEPTSYLIGD--GVGKGNDDDRFFVFEAD--------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY +       +      ++
Sbjct: 155 ----------EYRDHFLAYH------PDYAIMTNIDFDHPDYFKDIDDVRGSFETYGRQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296
              +     + DDA  +++     +    V   G         + +              
Sbjct: 199 ---KKAIFAWGDDANLRKL-----DVDVPVYYYGTGADDDFRAENIRRTPAGSTYDAYFR 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   L GE  + N+L    +     +D   + + L     V  RF         
Sbjct: 251 DRKLGTFTIHLYGEHSILNSLAVLAVAYMEKVDMDKIKQELANFSGVKRRFSETDVADD- 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            ++  DYAH  N ++  +   R       I+ VF                 +L  AD   
Sbjct: 310 -KLIDDYAHHPNEIKATIDAARQKFPDKEIVAVFQPHTYSRLAAYIDGFAASLSKADKVF 368

Query: 415 VTDDNP--RSEDPEKIRAEIIHGIPG 438
           VT      R +D     A++   IPG
Sbjct: 369 VTPIFSSIREQDGSVSSADLEAKIPG 394


>gi|224477766|ref|YP_002635372.1| hypothetical protein Sca_2284 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422373|emb|CAL29187.1| hypothetical protein SCA_2284 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 675

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 32/352 (9%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           + +   +    P +VV N+ K + + A  +   +   I+ +TG+ GKSS    +      
Sbjct: 81  ESYVEGLAKKIPQIVVKNSIKAMKILALYIRKNYRNPIVCITGSMGKSSTRLMLTAALAP 140

Query: 140 SGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +   + G ++T S+           P       +L+ L+++G                
Sbjct: 141 LKVQENR-GNSNTRSAIYLHMCKLAANPDIAIFETSLNALNNRGNMA------------- 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               +K      T +G  H+    + +     K R+F  L  K   AI  AD  ++  + 
Sbjct: 187 --SVLKPDIAIVTGIGSAHLSTIGSTEEIAEYKSRIFAGLNEK-GIAIYNADTLHNAFLK 243

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             A     +V     +     L        ++ V +        F  P      V NAL 
Sbjct: 244 DVALKHTSKVYGYSTENSKADLYTEEITPIRKAVKVKTNDGT-HFTVPSVSNGMVENALA 302

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTS------NSL 369
                  + I+    L++L    +     EF  + + +    +  D  H +      N++
Sbjct: 303 VLLTLKHLDINVDEKLDNLSNTQLFKKVLEFKNIHSATENATLL-DDTHNASLPAMINAI 361

Query: 370 EMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +      +     +II +      G   D     ++  +    AD  +  D+
Sbjct: 362 QAFDSQSKFFEGHKIIALGQISDLGEQTDNVHAKLVPILEQSKADYILCMDE 413


>gi|311063964|ref|YP_003970689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
           [Bifidobacterium bifidum PRL2010]
 gi|310866283|gb|ADP35652.1| MurD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 476

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 123/375 (32%), Gaps = 53/375 (14%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +    GL +  +G      S                  
Sbjct: 100 PAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVGNIGKAVS------------------ 141

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K ++
Sbjct: 142 -HAAVDPDNDALCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSKV 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSV----------GYQGKFIHLKKV 282
           F  +       +  ADD     +   AH A  CR +            G    +I  +  
Sbjct: 199 FRNV---RRALVFNADDRRVSALASAAHTAEGCRRIGFTLGVPQPGQIGVDDGWIVDRSG 255

Query: 283 CAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A       T     ++F  L           + +A+ A  L + +G+D    L  L+  
Sbjct: 256 VAGGAFGDETRLAPVQEFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKAF 315

Query: 340 HVVPGRFEFVGTN--SRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                R + V T     GG I ++D +  +N+               + +    G  +  
Sbjct: 316 APGGHRIQTVATAATGDGGSIRFIDDSKATNAHAARASLSSFAPKSVVWI--AGGLAKGS 373

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGN-----RIEAIR 450
               ++   A  +    I+  D  P  E      A    GIP  + +          A+ 
Sbjct: 374 RFEQLVADQAHTIKAAVIIGKDQKPMLEA----FAASAPGIPLTVIEPEPSDTVMARAVD 429

Query: 451 TAIEMLNKQDVLVVA 465
            A       DV+++A
Sbjct: 430 AAGAYAGTGDVVLMA 444


>gi|304445552|pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Rhodanine Inhibitor
 gi|306991519|pdb|2X5O|A Chain A, Discovery Of Novel 5-Benzylidenerhodanine- And
           5-Benzylidene- Thiazolidine-2,4-Dione Inhibitors Of Murd
           Ligase
          Length = 439

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 117 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDDECELYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  A +R++E         ++
Sbjct: 157 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYEN----AKVCVV 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 211 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 261

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 262 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 321

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 322 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 376 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 409


>gi|258620874|ref|ZP_05715908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM573]
 gi|258586262|gb|EEW10977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM573]
          Length = 440

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 128/352 (36%), Gaps = 44/352 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L          T I VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLATGIPVVGDI-----ELFAWHVDKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKTAVGGNIGVPA--------------------LDLISPEVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           ADD  +       H A  +V++ G +          A H   +   + +          L
Sbjct: 215 ADDVQTFP----DHAAHLQVVTFGVEQPAQF---SVAEHQGHEYLFARDNAVLASSELSL 267

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+
Sbjct: 268 VGRHNVANVLTVLALLDSAGVNVRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN 326

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTD 417
            +  +   +   +     ++V G G   D     P+   + L L    +  D
Sbjct: 327 VASTLAALSGLKVEGQLYLLVGGVGKGADFTPLAPVFATLPLQLCCFGVDGD 378


>gi|329769529|ref|ZP_08260939.1| UDP-N-acetylmuramate-alanine ligase [Gemella sanguinis M325]
 gi|328838744|gb|EGF88342.1| UDP-N-acetylmuramate-alanine ligase [Gemella sanguinis M325]
          Length = 435

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 112/326 (34%), Gaps = 41/326 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK++ ++ V  I + + ++SF IG  +       D                  
Sbjct: 104 IAVTGAHGKTTTSTMVSNIFKHNFVTSFLIGDGTGHGEKNSDY----------------- 146

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +   + E   H L  H            TN+  DH DY   +   F+A      ++
Sbjct: 147 ----IVAEACEYYRHFLAYH------PNYAIVTNIDFDHPDYFNDEHDMFDAFQSFVNQV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +   +I  DD     +  +   +  +V++ G+ +G    +K V       +  +   
Sbjct: 197 ---KDTVVICGDD----RLASQLKPSTAKVVTYGFNEGNDYQIKNVKTTSENSKFDVYKN 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   + G   + NA  A  L    G+ +  + + L   H    RF      +  
Sbjct: 250 SELLGTFTMAVFGLHDISNATSAIALADICGLSTDEIQQSLGSYHHAERRFTEHKVGTN- 308

Query: 356 GRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH  + ++  +    R  +  +II +F         K       +L  AD   
Sbjct: 309 -IVVDDYAHHPSEIKATIDSARRKYSDKQIIAIFQPHTYTRTAKFLNEFAESLLTADKVF 367

Query: 415 VTDDNPRSEDPEKI--RAEIIHGIPG 438
           +        + EKI    ++    PG
Sbjct: 368 LCPIFASVREKEKIVGIEDLQKVTPG 393


>gi|153207157|ref|ZP_01945936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165918426|ref|ZP_02218512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212219390|ref|YP_002306177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuK_Q154]
 gi|226711903|sp|B6J5K6|MURD_COXB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120576818|gb|EAX33442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165917932|gb|EDR36536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212013652|gb|ACJ21032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuK_Q154]
          Length = 442

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 130/363 (35%), Gaps = 54/363 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 + I+A+TG++GK++V + V  + + +G +    G               TP P 
Sbjct: 100 FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIG-----EPVLEQITPEP- 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                          +  +E SS  L+      ++  A +  N+  DH++ + T Q Y  
Sbjct: 154 --------------DYYVLELSSFQLE--TTFSLRSQAATILNISEDHMNRYATLQDYLR 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R++ +        I+ AD+      +          LS G               + 
Sbjct: 198 AKQRIYTDCF----IPIVNADEPEIWCHLPFNKKP----LSFGLNNAA----DFSLAEHN 245

Query: 289 QQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           Q+ +I+ +GK         L     + NAL A  L  A  I    +L  L     +  R 
Sbjct: 246 QKTSIAYQGKILMPIQELKLNARHHLQNALAALALGTAAKIPIENMLHLLRDFSGIRHRC 305

Query: 347 EFVGTNSRGGRIYVDYAH-----TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           ++V          +DY +        +    ++++     G++I++   G  +     P+
Sbjct: 306 QWVRKYKE-----IDYYNDSKGTNVGATRAAIESLGQAAKGQLILI-AGGQGKGADFSPL 359

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +   +  + ++ +D P  E   K    I H         +  EA++ + +     D+
Sbjct: 360 KDVVKRYVKQVILIGEDAPLLEKTLKEITVIKHA-------DSMNEAVKRSTQAAKAGDI 412

Query: 462 LVV 464
           +++
Sbjct: 413 VLL 415


>gi|218282273|ref|ZP_03488572.1| hypothetical protein EUBIFOR_01154 [Eubacterium biforme DSM 3989]
 gi|218216741|gb|EEC90279.1| hypothetical protein EUBIFOR_01154 [Eubacterium biforme DSM 3989]
          Length = 435

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 127/378 (33%), Gaps = 52/378 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++  ++           + P +      ++L +           + + V GT GKS+  
Sbjct: 63  VIIGLSFDQTHPEVKAAMDNPTVKTYYYNEYLGILLESY------SSICVAGTHGKSTTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             + Q+       ++ IG          D     P                  H  +E+ 
Sbjct: 117 GILGQVLSLQDECAYLIG----------DGHGYMPE--------------HANHFVLESC 152

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                +H L          TN+  DHIDY++    Y +A     +++   +   +++ D+
Sbjct: 153 EFQ--RHFLAY-HPDYAIITNIELDHIDYYKDIDDYVSAFQSFADQV---KKHIVVFGDN 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
            + K +     +    V + G   G       +              G+          G
Sbjct: 207 EHLKNL-----HYNVPVTTYGMKDGNDYQAVNIEQGPFGMHFDCKHNGEILAHVELNEVG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + +AL    L   +G+ + L+++ L++   +  R  FV    +   +  DYAH   +
Sbjct: 262 DPFMQDALGCFALAHVLGMPADLIVQGLKEYKGIARR--FVIDEVKDSVLVDDYAHHPTA 319

Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDP 425
           + +++  +R      +I+ ++                 +L+ AD   + D   N   ED 
Sbjct: 320 IRLMIDAVRKKYPEKKIVALYKPDRYSRLQYFLDDFAKSLNTADQVCLLDFPKNAVRED- 378

Query: 426 EKI---RAEIIHGIPGFI 440
           E I     +++   P  I
Sbjct: 379 ETITVTIQDLMDRCPNAI 396


>gi|254557006|ref|YP_003063423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
 gi|254045933|gb|ACT62726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
          Length = 459

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S ++ +     ++           +  +       TN+   H+DYH +++ Y  AKMR+ 
Sbjct: 154 SAIAQKATAADTMVTELSSFMLCGIQTLHPHIAVITNIYSTHLDYHGSRENYVKAKMRI- 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     +I  D    +++ K++      V+    Q       K  A     ++   
Sbjct: 213 TMNQTANDYLVINWDSEEWRQLSKQSQ---ATVVPFSRQAN----TKDGAYEEAGKLYFK 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG+  V NAL A  +     + +A +++ L+    V  R ++V T   
Sbjct: 266 DEYIMDAADIRIPGDHNVENALAAIAVAKLQAVPTAGIVQVLKTFTGVRHRTQYVETYQD 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    S EM LK          +++   G DR      +   +   +  + +
Sbjct: 326 RQFYNDSKATNLVSTEMALKGFDQ-----PVILLAGGLDRGNTFEKLAPALKAHVKTLIV 380

Query: 415 VTDDNPRSEDPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E  EK+     + GI       N   A+  A +     D++++
Sbjct: 381 F------GETAEKMADAGRLAGIQDIEFTDNCETAVPIAWQHSQAGDIIML 425


>gi|153803325|ref|ZP_01957911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|254226621|ref|ZP_04920201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|254291799|ref|ZP_04962584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|124121143|gb|EAY39886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|125620840|gb|EAZ49194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|150422311|gb|EDN14273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|327484899|gb|AEA79306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           LMA3894-4]
          Length = 440

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 215 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 269 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 327 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 377

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 378 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|87199446|ref|YP_496703.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135127|gb|ABD25869.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 475

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 131/410 (31%), Gaps = 40/410 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +SS   +   SA +    P +V        R   +   S L+   P  + AV GTSGKS+
Sbjct: 75  ISSPDQILVASAAVEDTVPEVVRARELGCARMSRAELLSALFNTAPVGV-AVGGTSGKST 133

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V      I   +G          TI + A       P   +   A + +         V+
Sbjct: 134 VTGMTGWILTYAGRDP-------TIMNGAVMKNFVAPDAPF---ASARVGKGEAFVSEVD 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   +  +             N+  DH    ++ +        LF + L +   A++ A
Sbjct: 184 ESDGSIALY-----NPAIAVLNNVSLDH----KSLEELR----ELFGDFLARADTAVVNA 230

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKDFDFLFPLP 307
           DD  S  ++ RA  A    +S        H             V    +         +P
Sbjct: 231 DDPESLALIGRAGRAVTFGISSEADISVEHGSIAEGPTSIGATVIDRRDASRHPLTLKIP 290

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A     A G+  A  +  L     +  RF+ VGT++ G  +  D+ H   
Sbjct: 291 GRHNLANALAAVAAANAAGLSVAEAVASLVGFEGLARRFDIVGTSASGVTVIDDFGHNPE 350

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD----------RDQGKRPIMGKIALDLADIAIVTD 417
            +   L  ++    GR+I  F   G            +   R +       L D      
Sbjct: 351 KVGATLSTLKAH-PGRVIAFFQPHGYGPLRQMGAELAEVMARTLDANDISVLCDPVYFGG 409

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              RS   E+I   I            R +      ++    D +V+ G 
Sbjct: 410 TVDRSVGSERIVDLIRSHGGKAEYIAERTDCATRIAQLARPGDRVVIMGA 459


>gi|309798581|ref|ZP_07692856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
 gi|308117817|gb|EFO55218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
          Length = 162

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 16/158 (10%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +  DSR  Q   +F  + G       F+  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNYSDVVFDSICYDSRKAQENCLFF-VKGAAFK-KEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AIAQG    V    Y +         + P++VV + +K +SL A   YG   E +  LA 
Sbjct: 66  AIAQGLGWYVAEQDYEV---------DIPVIVVSDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           TGT GK++ A F   I  +    +      +T+     
Sbjct: 117 TGTKGKTTAAYFAYNILNQQYRPAMLSTMNTTLDGKNF 154


>gi|167752866|ref|ZP_02424993.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
 gi|167659935|gb|EDS04065.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
          Length = 450

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 142/402 (35%), Gaps = 55/402 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKF------LSLFASRLYGKHPENILAVTGTSGKSSV 129
           A      S  I    P++V    R+          FA R  GK     + VTG++GK++ 
Sbjct: 62  AADEVVKSPGIPDKAPMIV--KLREAGIPVISEMEFAGRYLGK--ARTICVTGSNGKTTT 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + +I + +G +    G      SFA            L   LS     G+       
Sbjct: 118 TSLIYKILRDAGYNVALGGNIG--ESFAYSVATGDYDWYVL--ELSSFQLDGMF------ 167

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYA 248
                        +   G  TN+  DH+D +    Q Y +AKMR+ +    ++       
Sbjct: 168 -----------RFRAHIGVLTNITPDHLDRYDYCFQNYVDAKMRITQNQNSRDFFIYSGD 216

Query: 249 DDAYSKEV------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           D+   +++      MK+   A    ++ G    F+   K  A   ++ V I         
Sbjct: 217 DEVIWQQLPKYDLRMKQLPFAAKNAVASGAGDAFLLDGKFTATVGRESVEIDT------A 270

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG    YNA+ AA   +A G+    +   +     V  R E  G    GG  Y++ 
Sbjct: 271 KMRIPGLHNAYNAMAAALAALAAGVSPIRIRSSIYDFAPVEHRLEPAGE--IGGVAYIND 328

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  +N ++     + ++    + +    G D+     P+       +  +  +  DN   
Sbjct: 329 SKATN-VDSTWYALESMKRPVVWI--AGGTDKGNDYEPLKRFAREKVHTLVCMGIDN--- 382

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               K+       IP  I   +   A++ A +     DV+++
Sbjct: 383 ---RKLVESFTGIIPEIISTDSLDAAMQAARKASRPGDVVLL 421


>gi|163781898|ref|ZP_02176898.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883118|gb|EDP76622.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 415

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 142/407 (34%), Gaps = 63/407 (15%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            FI        + +V+S     +           I V+          A R +     ++
Sbjct: 40  EFIDSV-----DVVVLSPGVPPRHPLWKEALKRDIEVIGEL-----ELAYRFFE---GDV 86

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT GKS+       +  +      + G   T  S                     +
Sbjct: 87  VAITGTDGKSTTTRLTSLMLSKKIKDVHEAGNIGTPLSEVV------------------M 128

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S    T V   +S  G     L+  +   G+F N   DH+D+H     Y  +K  +F   
Sbjct: 129 SDPKSTAVVEVSSFQG---RTLNTFRPSVGAFLNFHEDHLDWHPDLGDYLRSKHNIFSRQ 185

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P+++                 A +    VLS   Q   + + +   +    +V    E 
Sbjct: 186 EPRDTFI---------------AGSLQDEVLSTPTQADRVVVDREVVVAEG-RVLFRGEL 229

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G   + NA+VA+ +    G+ +  + E L +   +P R E V    RG  
Sbjct: 230 LFELGDLRLKGAHNLKNAVVASIIARLKGVSTEDIREVLREFRGLPFRMELVKVW-RGVE 288

Query: 358 IYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           IY D  + T N+L+  L+   +   G +I++   G D+    +P+  + A     +A + 
Sbjct: 289 IYNDSKSTTPNALKAALE---SFPDGSVILI-AGGKDKGADFKPLR-ETAERKLKLAFLI 343

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                 E  E ++     G        +  EA+ +A+ +    D ++
Sbjct: 344 -----GETRESMKTA-FGGGSNIKTMSSLEEAVDSALRVAEPGDFVL 384


>gi|262190386|ref|ZP_06048646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
 gi|262033726|gb|EEY52206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
          Length = 440

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 215 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLVARNEAFMACAELSLV 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 269 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 327 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 377

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 378 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|240080774|ref|ZP_04725317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae FA19]
 gi|268596891|ref|ZP_06131058.1| hypothetical protein NGEG_00968 [Neisseria gonorrhoeae FA19]
 gi|268550679|gb|EEZ45698.1| hypothetical protein NGEG_00968 [Neisseria gonorrhoeae FA19]
          Length = 458

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 101/316 (31%), Gaps = 18/316 (5%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +   H   +L V GT GK++ AS +  + + +GL+   +     I    ++  +
Sbjct: 95  QWLAENVLHHH--WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL-----IGGVPENFGV 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +  +  S   V       ++    + +    +       NL  DH D    
Sbjct: 148 SARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +        P E   +        ++ + +           G      H  ++
Sbjct: 208 LGAI-QTQFHHLVRTAPSEGLIVCNGQQQSLQDTLDKGCWTPVEKFGTG------HGWQI 260

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++      + ++GK      + L G     NAL         G+D     E L     
Sbjct: 261 GEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVIAAARHAGVDVQTACEALGAFKN 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  GT + G  +Y D+AH   ++E  ++ +R    G  I+              +
Sbjct: 321 VKRRMEIKGT-ANGITVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTM 379

Query: 402 MGK--IALDLADIAIV 415
                 +L  AD    
Sbjct: 380 KSALPASLKEADQVFC 395


>gi|121587626|ref|ZP_01677390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|153818416|ref|ZP_01971083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|153830351|ref|ZP_01983018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255746924|ref|ZP_05420869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262161533|ref|ZP_06030643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
 gi|30316132|sp|Q9KPG5|MURD_VIBCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121548136|gb|EAX58209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|126511049|gb|EAZ73643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|148874158|gb|EDL72293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255735326|gb|EET90726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262028844|gb|EEY47498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
          Length = 440

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 139/397 (35%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 215 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 269 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 327 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 377

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 378 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|308173485|ref|YP_003920190.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606349|emb|CBI42720.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 125/350 (35%), Gaps = 39/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + + ++ +   + +   G   T++S   +         ++   L
Sbjct: 113 AKFIGITGSNGKTTTTTLIYEMLKADSIKTLIAGNIGTVAS---EVAYHADGDEWIVTEL 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                     +   G   N+   H+DYH +++ Y  AK +++
Sbjct: 170 SSFQLMGTHAF-----------------RPEIGLILNVFDAHLDYHHSRENYEKAKQKVY 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L +   AI+  +D     + K          SV  +       K   +    +  + 
Sbjct: 213 LHQL-ESDTAIVNQNDETVVRLAKGGKAGTVP-FSVSQELSSGAFIKDGMLMFGDEAILP 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V+         LPG   + N L A       G  +  + + L     V  R ++V T  +
Sbjct: 271 VDD------IVLPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVKHRLQYV-TAIQ 323

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + Y D   T+     IL   + +++ +  V+   GG         +     ++  +  
Sbjct: 324 NRKFYNDSKATN-----ILATSKALSAFKAPVILLAGGLDRGNGFDELKPYMDNVKAVLT 378

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 379 FGQTAPKIE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|306834166|ref|ZP_07467286.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus bovis ATCC
           700338]
 gi|304423739|gb|EFM26885.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus bovis ATCC
           700338]
          Length = 443

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 96/301 (31%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +  + +    +S+ IG  +   S   +  +               
Sbjct: 106 FGVAGAHGKTSTTGLLSHVLKNITDTSYLIGDGTGRGSANSNYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY ++    F+A     +++
Sbjct: 155 ----------EYQRHFMPYH------PEYSIITNIDFDHPDYFKSIDDVFDAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    +Y DDAY +++   A      +   G++         +    N     +   
Sbjct: 199 ---QKALFLYGDDAYLRKITSDA-----DIYYYGFKDTDDFVAYDIVRTTNGSVFKVRHG 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++   F  P  G   + NA          GID  LV EH++    V  RF     N+  
Sbjct: 251 DEELGSFHLPAFGLHNILNATAVVANLYIAGIDMELVAEHMKTFAGVKRRFTEKVINN-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 309 TTIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFTNALNQADSVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|300768844|ref|ZP_07078738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300493577|gb|EFK28751.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 459

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S ++ +     ++           +  +       TN+   H+DYH +++ Y  AKMR+ 
Sbjct: 154 SAIAQKATAADTMVTELSSFMLCGIQTLHPHIAVITNIYSTHLDYHGSRENYVKAKMRI- 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     +I  D    +++ K++      V+    Q       K  A     ++   
Sbjct: 213 TMNQTANDYLVINWDSEEWRQLSKQSQ---ATVVPFSRQAN----TKDGAYEEAGKLYFK 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG+  V NAL A  +     + +A +++ L+    V  R ++V T   
Sbjct: 266 DEYIMDAADIRIPGDHNVENALAAIAVAKLQAVPTAGIVQVLKTFTGVRHRTQYVETYQD 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    S EM LK          +++   G DR      +   +   +  + +
Sbjct: 326 RQFYNDSKATNLVSTEMALKGFDQ-----PVILLAGGLDRGNTFEKLAPALKAHVKTLIV 380

Query: 415 VTDDNPRSEDPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E  EK+     + GI       N   A+  A +     D++++
Sbjct: 381 F------GETAEKMADAGRLAGIQDIEFTDNCETAVPIAWQHSQAGDIIML 425


>gi|167745317|ref|ZP_02417444.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
 gi|167655038|gb|EDR99167.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
          Length = 468

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 100/289 (34%), Gaps = 18/289 (6%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L ++  + +  E SS  L+   +   +    +  N+  DH+D H T + Y   K  + + 
Sbjct: 167 LDTKDESVIVAEISSFQLE--TIQDFRPQVSAVLNITPDHLDRHGTVEVYARTKESIGKN 224

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +   ++  +D  ++ + +RA NA     S+ ++ +     K  +    +  T+   
Sbjct: 225 QT-GDQVMVLNYEDPVTRNMAERA-NARVVFFSLDHELEEGVYFKDGSFMLAENKTVQTI 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + D            N L A  +   +G+ +  + + +     V  R E+V T     
Sbjct: 283 CTEADINLLGG--HNYENILAAIAVSHYMGVPAEQIRKGVSGFKGVEHRIEYVDTIKDVA 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                    +++    +K +   T       F  GG  D+         A D     ++ 
Sbjct: 341 YYNDSKGTNTDAAIKGIKAMNRPT-------FLIGGGYDKKAEYDDWIEAFDGKVKELIL 393

Query: 417 DDNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    EKI +    HG    +      EA+  A +     D +++
Sbjct: 394 L----GATAEKIGKTAEAHGFSRIVYVDTLEEAVEYASKHAVSGDAVLL 438


>gi|90580815|ref|ZP_01236618.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
 gi|90438083|gb|EAS63271.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
          Length = 462

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 110/363 (30%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ AS +  I +  G     +     + +F    R        L +
Sbjct: 113 HDRWVMAVSGTHGKTTTASMLAWILEDCGYQPGFL-VGGVLGNFGISAR--------LGE 163

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 164 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLKAIQRQFHH 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +         E ++    +    +     G   H +      +     
Sbjct: 219 LV-RTVPSNGRILAPKGVKNIDETLEMGCWSELEYI-----GGDGHWRAEKHHADGSVFD 272

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++        +PL G+  V NAL+A      +G+   L  E L K      R E  G 
Sbjct: 273 VYLDSDIVGTVHWPLVGDHNVNNALMAIAAARHVGVKPELACEALAKFINTKRRLELKGE 332

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
            S G  +Y D+AH   ++E+ L  +R   +   I+                  +A  L  
Sbjct: 333 VS-GVTVYDDFAHHPTAIELTLGGLRAKVNQSRILAVLEPRSNTMKLGVHKDDLAPSLHA 391

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD             P  I     EI            +  + +          D ++V 
Sbjct: 392 ADEVFFFQ-------PPNIPWSVEEIAEQCSQPAYCSADLDDLVNNIANKAQPGDTILVM 444

Query: 466 GKG 468
             G
Sbjct: 445 SNG 447


>gi|239917863|ref|YP_002957421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
 gi|239839070|gb|ACS30867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 531

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 143/420 (34%), Gaps = 55/420 (13%)

Query: 67  GAEA--IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           GA A  +V S  +        A   +  PI    +      L      G+   + + +TG
Sbjct: 103 GAAADLVVTSPGWRPDQPLLMAAHAAGLPIW--SDVELAWRL--RERAGRKTADWVCLTG 158

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GK++  + V+ I +  G  +   G   T                      +    QG 
Sbjct: 159 TNGKTTTVTMVEAILRADGRRAVACGNVGT------------------PVLDAIRDPQGF 200

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +++E SS  L  H   G+   + +  NL  DH+D+H + + Y  AK +++        
Sbjct: 201 DVLALELSSFQL--HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGKVYAN---TRV 255

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D  ++ +++RA +      ++G+      L  +  +         ++ +  + 
Sbjct: 256 ACVFNEQDPLTRTLVERA-DVQEGCRAIGFTTDTPGLSDIGVVDGILVDRAFLDNRRHEA 314

Query: 303 LF--------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +         P+     + NA  AA L  A+G+  A V E L        R + V T+  
Sbjct: 315 IALAERADLGPVAPRHTMANAAAAAALTRAVGVSPAAVAEGLRSYDRGEHRIQLVATSRD 374

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +    A   ++ +  L    ++           G  +      ++   A  L  + +
Sbjct: 375 IMWVNDSKATNPHAADASLAAFSSVVW------LAGGLPKGVTYHELVAAHAHRLRAVVL 428

Query: 415 VTDDNPRSEDPEKIRA-EIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVA 465
           +  D           A ++    P     G           EA+R A  +    D +++A
Sbjct: 429 LGRDTSALRAALAAHAPDVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDTVLMA 488


>gi|313115620|ref|ZP_07801078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310622069|gb|EFQ05566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 467

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 119/361 (32%), Gaps = 39/361 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIG----------------A 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L  ++ + V    VE SS  L               TN+  +H+D+H+  Q Y +
Sbjct: 157 ALLPMLPEVAPEDVAV--VELSSFQLISMHSS---PNIAVVTNVTPNHLDHHKDMQEYID 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +           + Y ++  S+ +             +        L+K   +   
Sbjct: 212 AKRNILLYQKQPCRAVLGY-ENEISRSMQSDCKGKQVWFTRLHDTDNGAFLRKEDNMLCM 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +            L G   + N L AA       +    + +       V  R E 
Sbjct: 271 AEDGVVTPFLA-QKDVKLRGLHNIENLLAAAAAVWGE-VPVEAIQKVGSTFTGVEHRIEP 328

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T    G +Y + +    S    +  +R+    + +++   G D+     P+  ++   
Sbjct: 329 VRT--LDGVLYYNDS-IGTSPTRTIAGLRSF--NQKVILIAGGYDKHIPYEPLAPEVVAH 383

Query: 409 LADIAIVTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + ++ ++    PR      EDP    AE+           N   A+  A       D+++
Sbjct: 384 VKNLVLMGATGPRIEKAVREDPNFNEAEL-----PIQHADNMQHAVELARACAKPGDIII 438

Query: 464 V 464
           +
Sbjct: 439 L 439


>gi|315174254|gb|EFU18271.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1346]
          Length = 456

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 96/301 (31%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    L+Y 
Sbjct: 120 IAVTGSHGKTSTTGLLAHVLSGINPTSYLIG-DGTGHGEPDADFFAFEACEYRRHFLAY- 177

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+++ +  F+A  +     
Sbjct: 178 -------------------------SPDYAIMTNIDFDHPDYYKSIEDVFSA-FQTMAHQ 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           + K   A  Y DD Y +++      +   V   G  +   I  + +          +  +
Sbjct: 212 VKKGIFA--YGDDKYLRQL-----ESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVYHK 264

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F+ P  G   + NAL    +     +D   V E +     V  RF     +   
Sbjct: 265 DDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVSDM- 323

Query: 356 GRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  +    +      II VF                 ALDLAD   
Sbjct: 324 -IIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADEVF 382

Query: 415 V 415
           +
Sbjct: 383 L 383


>gi|254784797|ref|YP_003072225.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Teredinibacter turnerae T7901]
 gi|237687325|gb|ACR14589.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Teredinibacter turnerae T7901]
          Length = 477

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 132/408 (32%), Gaps = 51/408 (12%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS    L    A + +  P +            A  L     + +L V+GT GK++ A+
Sbjct: 86  VVSRGNPL--MEAILDAGLPYV------SGPQWLAENLLR--GKWVLGVSGTHGKTTTAT 135

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + + ++   +     I     +   +           + L       +  +   
Sbjct: 136 MLTWILEYAHMAPGYL-----IGGVPGNFATS-----------ARLGESDFFVIEADEYD 179

Query: 192 HGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 R   +  +       NL  DH D      A    +       +P     I  A 
Sbjct: 180 TAFFDKRSKFVHYQPRTLVINNLEYDHADIFPDLAAI-QTQFHHLLRTVPNNGLVISPAG 238

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
           D   ++V+ R      +  ++     ++  ++  A     + T++  G+   +  + L G
Sbjct: 239 DTAVEQVITRGCWTPRQTTALAANADWLIAERDAA---GTRFTVAFGGQVVGEISWSLTG 295

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A      +G+   L    L + + V  R E V  +     +Y D+AH   +
Sbjct: 296 SHNMRNALSAMAAARHVGVVPELACAALCEFNGVKRRME-VRVDLPSVTVYDDFAHHPTA 354

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
           +   L+ +R       I+            G        A + AD  I        + P 
Sbjct: 355 IATTLEGLRAQVGDEPILAVIEPRSNTMRLGVHQASLAAATEPADAVI------WFQPPG 408

Query: 426 -----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E + A     + G  E    IEA+R  +     +  +V+   G
Sbjct: 409 MNWSLESVVAAEHRVMQGTAEI---IEAVRAYLAQAPAKTHVVIMSNG 453


>gi|28378801|ref|NP_785693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum WCFS1]
 gi|308180998|ref|YP_003925126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38258037|sp|Q88V80|MURD_LACPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28271638|emb|CAD64544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           plantarum WCFS1]
 gi|308046489|gb|ADN99032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 459

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S ++ +     ++           +  +       TN+   H+DYH +++ Y  AKMR+ 
Sbjct: 154 SAIAQKATAADTMVTELSSFMLCGIQTLHPHIAVITNIYSTHLDYHGSRENYVKAKMRI- 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     +I  D    +++ K++      V+    Q       K  A     ++   
Sbjct: 213 TMNQTANDYLVINWDSEEWRQLSKQSQ---ATVVPFSRQAN----TKDGAYEEAGKLYFK 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +PG+  V NAL A  +     + +A +++ L+    V  R ++V T   
Sbjct: 266 DEYIMDAADIRIPGDHNVENALAAIAVAKLQAVPTAGIVQVLKTFTGVRHRTQYVETYQD 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    S EM LK          +++   G DR      +   +   +  + +
Sbjct: 326 RQFYNDSKATNLVSTEMALKGFDQ-----PVILLAGGLDRGNTFEKLAPALKAHVKTLIV 380

Query: 415 VTDDNPRSEDPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E  EK+     + GI       N   A+  A +     D++++
Sbjct: 381 F------GETAEKMADAGRLAGIQDIEFTDNCETAVPIAWQHSQAGDIIML 425


>gi|294627149|ref|ZP_06705737.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598582|gb|EFF42731.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 452

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 145/412 (35%), Gaps = 28/412 (6%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+ QG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 49  ALEQGYAPSNISPDATEVIVGNALSRGNPAVEAVLDAGRRYTSGAQWLAERVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A+D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGREFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G++       ++ A        +    + 
Sbjct: 214 ARGRLIVNGEDAHLAEVL--AMGCWTPVERFGFEASLDWSARLIAADGSAFAVLHRGVEI 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A V+  L +   V  R E +G N+R   +Y
Sbjct: 272 GQVQWPLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVKRRLEVIG-NARDITVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       ++V                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRAKVGAARVLVAMEPRSNSMRLGAHAQALAPSLQDADAVVFL- 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              R E      A II  + G     + ++A+   + E+    D +V    G
Sbjct: 390 --HRPELAWD-AAPIIAQVRGDAHVAHDVDALLQTLGEIARPGDHVVFMSNG 438


>gi|116873466|ref|YP_850247.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116742344|emb|CAK21468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 455

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 104/285 (36%), Gaps = 26/285 (9%)

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     +
Sbjct: 162 EQYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-AD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I  D    K + K+         +    G+  +++          +    E     
Sbjct: 219 DFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GDIMFDDEVIGSR 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D
Sbjct: 272 DSILLPGEHNLENILASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYND 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+  +      ++   +   +V+   G DR      ++       + I         
Sbjct: 331 SKATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKSLIVF------- 379

Query: 422 SEDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
            E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 380 GETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESEPGDIILL 422


>gi|303246305|ref|ZP_07332585.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
 gi|302492368|gb|EFL52240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
          Length = 441

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 124/422 (29%), Gaps = 84/422 (19%)

Query: 58  LFIPQAIAQG---------------AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
            F  +A+  G               A+ +V+S        +  + +     V+       
Sbjct: 51  DFRAEAVEAGYDLRVGAHGPADFAGADMVVLSPGIRAAGLADCLAACPGAQVLSEL---- 106

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              AS    +    I+AVTG++GK++    V  + + +G   F  G   T  S       
Sbjct: 107 -ELASWFVTEP---IVAVTGSNGKTTTVMLVSHLLEAAGRKVFTGGNIGTPLSEYV---- 158

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                         L+      V +E SS  L    +   +       N   +H+D+H  
Sbjct: 159 --------------LAGDPADVVVLEVSSFQLQL--VKSFRPKVAVLLNFSPNHLDWHAD 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y +AK+ +F    P ++  +                    R +     G+      V
Sbjct: 203 LEEYLSAKLNIFAAQRPGDTAILP-------------------RDMRDALAGRSFTRADV 243

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  +               L G     N   A       G+   +     E+    
Sbjct: 244 TWFEPSGRF----------VCPRLAGAHNRQNMEAAFLATQPFGVTEEIAKVAFERFAPA 293

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R + +G   +GG ++VD +  + ++  +   +R+      ++    G  +      + 
Sbjct: 294 PHRLQIIGE--KGGVLFVDDSK-ATTVAAMEAALRSFDRPVRLLC--GGVFKGGDLAALS 348

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +A + +        E           G      +     A+          DV+
Sbjct: 349 PLLKERVAAVGLFGAGREVFEAA-------WAGQVPLFHEPTLKPAVTRLFAEARPGDVV 401

Query: 463 VV 464
           ++
Sbjct: 402 LL 403


>gi|134102301|ref|YP_001107962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914924|emb|CAM05037.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 469

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 120/358 (33%), Gaps = 43/358 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   LAVTGT+GK++    ++ I +  G+     G                         
Sbjct: 112 PATWLAVTGTNGKTTTVGMLESILRADGVDVVACGNVGL--------------------P 151

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +      G   ++VE SS  L  H    +   A    NL  DH+D+H +  AY  AK R+
Sbjct: 152 VVDAVRAGHRVLAVELSSFQL--HWSQTVAPHASVVLNLAADHLDWHGSLDAYGAAKARV 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +       S A+  ADD +S  +         R +S         +  V +     +   
Sbjct: 210 YAG----NSVAVHNADDEWSVRLADAGAPQQARRVSFTLSDPAPGVLGVESGALVDRAFG 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                         G   V NAL AA L  A G++   V E L        R   V  ++
Sbjct: 266 DRVRLAAVADVHPAGPHNVANALAAASLARAYGVEPEAVAEGLRSFQPGAHRSVVVAESA 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A   ++ +  L+         + +    G  +      ++   A  LA + 
Sbjct: 326 GVSYVDDSKATNPHAADAALRA----HPKVVWI--AGGLLKGADVEDLVAANAARLAGVV 379

Query: 414 IVTDDNPRSED------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           ++  D  R  +      P+    E+  G     +    + A+R A E       +V+A
Sbjct: 380 LIGRDRARFAEALARHAPDVPVREVESG-----DDAGMLAAVRLAGEFAEPGCAVVLA 432


>gi|118477615|ref|YP_894766.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118416840|gb|ABK85259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 258

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE-DGHLF 59
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  +  DGH +
Sbjct: 16  MNLKKL-----EEVINGGGLH-ESFHHLEIHGVRIDSKNIKEGNVFVPII--RVKDGHEY 67

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +++  GA A +   +Y       T     PI+ VD+T   L   A     +    ++ 
Sbjct: 68  VKESMDNGAVASLWKKSYG------TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIG 121

Query: 120 VTGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRL 162
           +TG++GK++V   ++ I        +  G  + QIG   TI    ++   
Sbjct: 122 ITGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEF 171


>gi|299143955|ref|ZP_07037035.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518440|gb|EFI42179.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 438

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 146/397 (36%), Gaps = 51/397 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+ S   + ++    + +   I VV +      +          +N++A+TGT+GK++  
Sbjct: 62  IIKSPGINPKNEILMLANEKNIKVVSDIEVAYGI-------TKCKNLIAITGTNGKTTTT 114

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S   QI   S   ++ +G    I     D                 L ++   ++ +EAS
Sbjct: 115 SLTYQILN-SDRKTYCVG---NIGKGILDIA---------------LEAEEDDYIVIEAS 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+       K I    TN+  DH+D+H     Y NAK ++F+     +     Y D 
Sbjct: 156 SFQLE--YTYDFKPIVSVITNVTSDHLDWHGNISNYKNAKYKIFKNQNEDDYTIFNYRD- 212

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + +   + +      S+   GK     K   I+ + +   S E         +PG  
Sbjct: 213 ---QNLKSLSFDRDIYYFSLEDSGKLGTFVKEGGIYFRSKD--STEFIMSVNDIKIPGVH 267

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSNSL 369
            V N L +  +  ++GI + ++ + +     V  R EFV     G + Y D      +S 
Sbjct: 268 NVENVLASTAIAKSLGIKNEVIKKSISNFMGVEHRIEFV-RELNGVKYYNDSKGTNPDST 326

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            M +  I         ++   GG   +     M  I L      I+        +   I 
Sbjct: 327 IMAINAIE------KNIILIAGGYDKKADFSEMLNIGLGKVKKLILLG------ETADIL 374

Query: 430 AEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +I    G   ++   +  +A+  +  + +  DV+++
Sbjct: 375 QKISKPLGYEIYM-VNDLDKAVMLSNSIASSGDVVLL 410


>gi|317483072|ref|ZP_07942073.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915478|gb|EFV36899.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 512

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 124/428 (28%), Gaps = 65/428 (15%)

Query: 82  FSATIRSNTPILVVDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V  +           + A  + GK     + V G  GK++ +S +  I
Sbjct: 90  YSSAIKPDNPEIVAAHAAGKRIVHRSDILALLMNGK---RAVTVAGAHGKTTTSSMLSHI 146

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G       P+  I  F Q      P    L    +      V        S     
Sbjct: 147 LVNAGAD-----PSYAIGGFIQG-----PDGTTLDGGHAGKGDILVAEADESDGSFA--- 193

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN   DH+D++  +  Y  A               II  DD     V
Sbjct: 194 ----KYHPTIAIITNCEADHLDHYGDEAHYRAA---FVAHAGRATGHVIISIDDPDGLAV 246

Query: 257 MKRAH-NAGCRVLSVGYQGK------------FIHLKKVCAIHNKQQVTISVEG------ 297
           ++    +     ++ G   +            +I  +   A    +Q+T+ +        
Sbjct: 247 LEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGVEQLTLHLPAAVTAGE 306

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A    + +G+  A              RF+  GT  +  
Sbjct: 307 PVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAANAAGTFLGAARRFQVRGTVKQ-V 365

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R      I V+F                 +L  AD  I+
Sbjct: 366 TVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAKSLAKADDVII 425

Query: 416 TDDNPRSED--------PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
           T   P  E         P  I  +   G+             +   A +      +  DV
Sbjct: 426 TGIFPAREKQADFPDISPSTIV-DAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAHHGDV 484

Query: 462 LVVAGKGH 469
           +   G G 
Sbjct: 485 IFTVGAGD 492


>gi|13471551|ref|NP_103117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mesorhizobium
           loti MAFF303099]
 gi|30316110|sp|Q98KB1|MURD_RHILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|14022293|dbj|BAB48903.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Mesorhizobium loti
           MAFF303099]
          Length = 466

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 110/305 (36%), Gaps = 38/305 (12%)

Query: 60  IPQAIAQGA-----EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           I  A  +GA      A V+S    L      ++  +     + V+ +   F      R+ 
Sbjct: 53  IATADLRGADWAKFSAFVLSPGVPLTHPKPHWTVELAKGAGVEVIGDIELFCRE---RIL 109

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  +A+TGT+GKS+  +    I + +G  +   G    I           P     
Sbjct: 110 QAPTAPFIAITGTNGKSTTTALTAHILKSAGRDTQMGG---NIGRAVMTLDPPKPD---- 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                        H  VE SS+ +D      I   AG   NL  DH+D H T Q Y + K
Sbjct: 163 ------------RHFVVECSSYQIDLA--PSINPTAGILLNLTPDHLDRHGTMQHYASIK 208

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            RL          AII  DD++  ++ +R   AG +V+ +  +            +  + 
Sbjct: 209 ERLVAG----SETAIIGIDDSWCAQIAERLERAGQQVIRISKRLPLTDGYFADGTNLMEA 264

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           V        F + +  L G+    NAL A   C+ +G+D   +   LE    +  R E V
Sbjct: 265 VHGRYSKVAFLEGIGSLRGQHNAQNALAAVAACLKVGLDLGEIQSGLESFPGLAHRMEQV 324

Query: 350 GTNSR 354
           G    
Sbjct: 325 GRKDH 329


>gi|23335451|ref|ZP_00120687.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Bifidobacterium
           longum DJO10A]
          Length = 505

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 124/428 (28%), Gaps = 65/428 (15%)

Query: 82  FSATIRSNTPILVVDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V  +           + A  + GK     + V G  GK++ +S +  I
Sbjct: 83  YSSAIKPDNPEIVAAHAAGKRIVHRSDILALLMNGK---RAVTVAGAHGKTTTSSMLSHI 139

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G       P+  I  F Q      P    L    +      V        S     
Sbjct: 140 LVNAGAD-----PSYAIGGFIQG-----PDGTTLDGGHAGKGDILVAEADESDGSFA--- 186

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN   DH+D++  +  Y  A               II  DD     V
Sbjct: 187 ----KYHPTIAIITNCEADHLDHYGDEAHYRAA---FVAHAGRATGHVIISIDDPDGLAV 239

Query: 257 MKRAH-NAGCRVLSVGYQGK------------FIHLKKVCAIHNKQQVTISVEG------ 297
           ++    +     ++ G   +            +I  +   A    +Q+T+ +        
Sbjct: 240 LEALPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGVEQLTLHLPAAVTAGE 299

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A    + +G+  A              RF+  GT  +  
Sbjct: 300 PVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAANAAGTFLGAARRFQVRGTVKQ-V 358

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R      I V+F                 +L  AD  I+
Sbjct: 359 TVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAKSLAKADDVII 418

Query: 416 TDDNPRSED--------PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
           T   P  E         P  I  +   G+             +   A +      +  DV
Sbjct: 419 TGIFPAREKQADFPDISPSTIV-DAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAHHGDV 477

Query: 462 LVVAGKGH 469
           +   G G 
Sbjct: 478 IFTVGAGD 485


>gi|322421364|ref|YP_004200587.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
 gi|320127751|gb|ADW15311.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
          Length = 453

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 144/427 (33%), Gaps = 50/427 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS    +      +       VV          AS         ++A+TGT+GK+
Sbjct: 69  ADLIVVSPGVPMDIKPLEMARAQRRRVVSEV-----ELASWFIK---APMVAITGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   +I +  G  +F  G                         L  L+  G     V
Sbjct: 121 TTTTLTGEIFKACGYQTFVGGNIG--------------------DPLIDLAMSGEEVDRV 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +       NL  DH+D + + Q Y +AK+R+FE   P +  A++ 
Sbjct: 161 VVELSSFQLEGIESFRPHVAVLLNLTEDHLDRYHSFQEYIDAKLRIFENQGPAD-FAVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            DD        +       +       +G       +      + +    +G      F 
Sbjct: 220 IDDPLVAACASKLKAQLFPMSRFHELQEGISYRDGFITFARKGKVLRFGTDG------FK 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   + N + +    + +G D     + ++    +P R EFV     G   Y D   T
Sbjct: 274 LKGVHNLDNIMASMASTLLMGCDGDCAYQAVKSFKGLPHRMEFV-EEVNGVSYYEDSKGT 332

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +  +  ++K++ +  SG  I +   G D+     P+   ++  ++ + ++ +   R    
Sbjct: 333 N--VGSVVKSLESFDSG--ITLIAGGKDKGGSYEPLAKLVSERVSHLVLIGEARQR---- 384

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                E +  +          EA+  A  +     V++ +     +  +  N E++    
Sbjct: 385 ---MKEALGQLTDTRFADTLEEAVDIARRLTEPGGVVLFSPACS-SFDMFKNYEERAERF 440

Query: 486 CDIIREI 492
              +R  
Sbjct: 441 KAAVRAA 447


>gi|33602559|ref|NP_890119.1| cyanophycin synthetase [Bordetella bronchiseptica RB50]
 gi|33576998|emb|CAE34078.1| cyanophycin synthetase [Bordetella bronchiseptica RB50]
          Length = 879

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 144/427 (33%), Gaps = 42/427 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA   V +    L           P+   +VD       LF +   G+ P  I+ VTGT
Sbjct: 446 RGAIVEVNAGPGLLMHLKPADGPPRPVGRAIVD------HLFPADDDGRIP--IVGVTGT 497

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+ VA  V ++   SG  +   G   +   +     +        A     L ++ V 
Sbjct: 498 NGKTVVARLVARLLHLSGKQT---GLACSEGLYLNKRLVQKGDCANWAAGRRVLMNRSVD 554

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQTQQAYFNA-KMRLFEELLPKE 241
              +E  S  +    L   + + G  TN+   DH+      +        R   +++   
Sbjct: 555 AAVIENDSGVILGQGLAYDRCLVGVVTNIDDGDHLGDFDINETDRLVDVFRTQIDVVLPG 614

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVE 296
             A++ A D     V++ A      VL  G                 A++ +    +   
Sbjct: 615 GAAVLNARDP---RVVRMAELCDGEVLYFGLDPALPTLAAHLADGRRAVYLRAGRIVLAR 671

Query: 297 GKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-- 345
           G+D                   FQ+ N L A     A+ I   L+   +E   +      
Sbjct: 672 GRDEEALADIAAVPLTHGGRVAFQIENVLAAVAAAWALDIPVELIRAGIETFDIDQADAP 731

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           ++F      G  + VD  H  ++L  +L  I    + R   V+  G DR+       G++
Sbjct: 732 WQFTLFERNGACVVVDDVHNPSALRALLAAIEQFPARRRAAVYSAGADRNDDALVEQGRL 791

Query: 406 ALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLN 457
                D  ++ DD       P  +    +R  +          ++ +   AI   ++ L 
Sbjct: 792 LGTAFDQVVLYDDATVASKRPAGQARGLLRQGLRQSARATAIADEADHARAIARVLDDLR 851

Query: 458 KQDVLVV 464
           + D  ++
Sbjct: 852 EGDFALL 858


>gi|89075543|ref|ZP_01161948.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
 gi|89048683|gb|EAR54255.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
          Length = 462

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 110/363 (30%), Gaps = 35/363 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AV+GT GK++ AS +  I +  G     +     + +F    R        L +
Sbjct: 113 HDRWVMAVSGTHGKTTTASMLAWILEDCGYQPGFL-VGGVLGNFGISAR--------LGE 163

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ++ ++        +          +             NL  DH D     +A       
Sbjct: 164 SMFFVVEADEYDSAFFDKRSKFVHY-----HPRTLIMNNLEFDHADIFDDLKAIQRQFHH 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +         E ++    +    +     G   H +      +     
Sbjct: 219 LV-RTVPGNGRILAPKGVKNIDETLEMGCWSELEYI-----GGDGHWRAEKHHADGSVFD 272

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++        +PL G+  V NAL+A G    +G+   L  E L K      R E  G 
Sbjct: 273 VYLDSDIVGTVHWPLVGDHNVNNALMAIGAARHVGVTPDLACEALAKFINTKRRLELKG- 331

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409
              G  +Y D+AH   ++E+ L  +R   +   I+                  +A  L  
Sbjct: 332 EVNGVTVYDDFAHHPTAIELTLGGLRAKVNQSRILAVLEPRSNTMKLGVHKDDLAPSLHA 391

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD             P  I     EI            +  + +          D ++V 
Sbjct: 392 ADQVFFFQ-------PPNIPWSVEEIAEQCSQPAYCSADLDDLVNNITSKAQPGDTILVM 444

Query: 466 GKG 468
             G
Sbjct: 445 SNG 447


>gi|239636340|ref|ZP_04677342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
 gi|239597695|gb|EEQ80190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
          Length = 449

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + + S L+    G    ++S          S  YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKNSRLTGRLSGNIGYVASK---VAQEVSSKEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH++ + Y NAK +++
Sbjct: 168 SSFQLLGIEQY-----------------KPHIAIITNIYSAHLDYHESLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   + L    Q      ++V  I+ K    I 
Sbjct: 211 KNQTEDD-----YLICNYHQRHLIESENLKAKTLYFSTQ------QEVDGIYIKDGF-IE 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G     +    LPGE  + N L A    I  G+    + + L     +  R +++GTN
Sbjct: 259 YKGVRIISVEDLVLPGEHNLENILAAVLAAILAGVPIKAIADSLTTFSGIEHRLQYIGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +      +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMKNVRVMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     E  EK            I+  +  +A+    +++   DV+++
Sbjct: 374 VF-------GETQEKFAKLGNSQGKYVIKATDVQDAVDKIQDVIEPNDVVLL 418


>gi|224282639|ref|ZP_03645961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313139797|ref|ZP_07801990.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132307|gb|EFR49924.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 476

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 123/375 (32%), Gaps = 53/375 (14%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +    GL +  +G      S                  
Sbjct: 100 PAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVGNIGKAVS------------------ 141

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K ++
Sbjct: 142 -HAAVDPDNDALCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSKV 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSV----------GYQGKFIHLKKV 282
           F  +       +  ADD     +   AH A  CR +            G    +I  +  
Sbjct: 199 FRNV---RRALVFNADDRRVSALASAAHTAEGCRRIGFTLGVPHPGQIGVDDGWIVDRSG 255

Query: 283 CAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A       T     ++F  L           + +A+ A  L + +G+D    L  L+  
Sbjct: 256 VAGGAFGDETRLAPVQEFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKAF 315

Query: 340 HVVPGRFEFVGTN--SRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                R + V T     GG I ++D +  +N+               + +    G  +  
Sbjct: 316 APGGHRIQTVATAATGDGGSIRFIDDSKATNAHAARASLSSFAPKSVVWI--AGGLAKGS 373

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGN-----RIEAIR 450
               ++   A  +    I+  D  P  E      A    GIP  + +          A+ 
Sbjct: 374 RFEQLVADQAHTIKAAVIIGKDQKPMLEA----FAASAPGIPLTVIEPEPSDTVMARAVD 429

Query: 451 TAIEMLNKQDVLVVA 465
            A       DV+++A
Sbjct: 430 AAGAYAGTGDVVLMA 444


>gi|261211501|ref|ZP_05925789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
 gi|260839456|gb|EEX66082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
          Length = 440

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 137/397 (34%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F         A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        V     ++ +    E         L 
Sbjct: 215 ADDTQTFP----DHAAHLQVVTFGVEHAAQF--SVAQHQGREYLFARDEAVMACAELSLV 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 269 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D  +      
Sbjct: 327 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGDKFMPLH- 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    P      +    IR+    L   D++++
Sbjct: 385 ---------PSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|302533953|ref|ZP_07286295.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
 gi|302442848|gb|EFL14664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
          Length = 476

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 150/439 (34%), Gaps = 54/439 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G E +V S  +          +   + VV +        A +L G+     LA+TGT+GK
Sbjct: 70  GTELVVTSPGWKPDSPLFLAAAEAGVDVVGDV-----EIAWQLRGEGAAPWLAITGTNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  I + +GL +  +G   T                     +  + +    +  
Sbjct: 125 TTTTQMLASILRAAGLKTAAVGNIGT--------------------PIIDVVTGDEQYDV 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +         H    ++  + +  NL  DH+D+H + +AY   K R++E         + 
Sbjct: 165 LAVELSSYQLHWAPSVRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYEGNTI---ACVY 221

Query: 247 YADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D  ++ +++ A    GCR +          +  V       +  ++   K+   L  
Sbjct: 222 NVADPATERLVEEADVEEGCRAIGFTLGAPGPSMLGVVDGILVDRAFVANRQKNAQELAH 281

Query: 306 L-----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +     P    + NAL AA L  A G++   V + L        R  FV        +  
Sbjct: 282 VDDVNPPAPHNIANALAAAALARAFGVEPRAVRDGLRDFRPDAHRVAFVDEVDGVRYVDD 341

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A  +++ E  L            VV+  GG         + + +       ++     
Sbjct: 342 SKATNTHAAEASLAAFEP-------VVWIAGGLAKGATFDELVQKSAKRLRGVVLM---- 390

Query: 421 RSEDPEKIRAEIIHGIPGF----IEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
              D   I   +    P      +E+ +    + A+R A  +    D +++A     ++ 
Sbjct: 391 -GADRALIAEALARHAPEVPVTDLERTDTGAMLAAVREAARLAEPGDTVLLA-PACASMD 448

Query: 474 IVTNGEKKMSVDCDIIREI 492
           +  N  K+     D +RE+
Sbjct: 449 MFANYNKRGDAFADAVREL 467


>gi|311280932|ref|YP_003943163.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
 gi|308750127|gb|ADO49879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
          Length = 438

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 154/404 (38%), Gaps = 66/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +   F          +    ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALSHPSLSAAADAGVEIVGDIELF--------CREAQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D          +++ L  L          
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLD----------VSRELYVL---------- 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCISFGINMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFGGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR--- 421
              S E  L  +     G + ++ G             GK A        +T DN R   
Sbjct: 323 NVGSTEAALNGL--HVDGTLWLLLGG-----------DGKSADFAPLKRYLTGDNIRLYC 369

Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              D +++ A +   +    E     +A+R     +   D++++
Sbjct: 370 FGRDGDELAA-LRPEVSTLTET--MEQAMRLIAPQVKPGDMVLL 410


>gi|254495666|ref|ZP_05108586.1| cyanophycin synthetase [Legionella drancourtii LLAP12]
 gi|254355117|gb|EET13732.1| cyanophycin synthetase [Legionella drancourtii LLAP12]
          Length = 855

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 122/371 (32%), Gaps = 25/371 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++V   +  + ++    ++  G T+T   +  +N +          A  
Sbjct: 459 PIVAVTGTNGKTTVVRLISHLARQ---VNYTTGTTTTEGIYINNNMICRGDCSGPGSAEV 515

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRL 233
            L +  V    +E +  G+ +  L   +      TN+  DH+      T +     K  +
Sbjct: 516 VLHAPEVDFAVLECARGGILRSGLGFDECDISIITNITVDHLGLGDIHTLEEMAEVKA-V 574

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQV 291
                 K   AI+ ADD  +  +                    K  +L  + A  +K  V
Sbjct: 575 VARSTKKTGYAILNADDNLTYNLRHDLQCNIALFSMFESPRIRKHCNLGGLTAYIDKGYV 634

Query: 292 TISVEGKDFDF--LFPLPGEFQ------VYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            I    +      +  +P  FQ      + N L A             + E L   +  P
Sbjct: 635 VIQQGARRHHIAKINEIPISFQGAATCMILNVLPAVLAGFISNFSIDKIKEALLNFYPTP 694

Query: 344 GRF--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
                           + +DYAH   +   I   + TI     I + G  GDR       
Sbjct: 695 ENLPGRMNLFKFPKCDVMIDYAHNEGAFCEIKNYLDTIECDTKIGIIGVAGDRRDEDIEK 754

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIE 454
           +G  +  + D  I+  D + R      I   +  GI      P      +   AI + + 
Sbjct: 755 LGYYSASMFDEIIIRHDKDGRGRSNNDITKHLRAGIARSGLTPEVNIISDEFAAIESVLA 814

Query: 455 MLNKQDVLVVA 465
             N    +  A
Sbjct: 815 RANADTFVFCA 825


>gi|153006301|ref|YP_001380626.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. Fw109-5]
 gi|152029874|gb|ABS27642.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. Fw109-5]
          Length = 513

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 120/362 (33%), Gaps = 29/362 (8%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P + + V GT GK++ ++ +  +   +G             SF            Y   A
Sbjct: 150 PRHGVVVVGTHGKTTTSAMMGFLLHHAGRDP----------SFLVGGVTRDFDSNYRLGA 199

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             + + +G  + +          H     +     FT+   DH D ++ +  Y +A    
Sbjct: 200 GPHFAVEGDEYDTAYFDKGPKFLHY----RPRTAIFTSCELDHADIYRDEAHYESA-FER 254

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  +LP++      A       + + A        +V   G     + +       + T+
Sbjct: 255 FMGILPEDGFLAACASYESVLRIARGAR-CRVETYAVDRPGADWEARGLALSPEGARFTL 313

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  G+   + L P+ G   V NAL  A    A+G+  A +   L   H V  R E  G  
Sbjct: 314 ARRGEALAEVLLPVGGAHNVENALGVAAAASALGLSPAEIAAGLGAFHGVKRRQEVRG-K 372

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL----D 408
           + G  +  D+AH   +++  L  IR    G  ++           +     + A      
Sbjct: 373 AGGVTVIDDFAHHPRAVQKTLAAIRGAYPGARLLAAFEPRSNTSRRNLHQREYAAGATWR 432

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-------LNKQDV 461
            A    +    P    PE  R ++   +      G    A  T  EM           DV
Sbjct: 433 DAAEVFLLRPAPTDRVPESERLDVDAVVRDVTAAGTPARAFATVEEMVPAIAATARPGDV 492

Query: 462 LV 463
           +V
Sbjct: 493 VV 494


>gi|256847517|ref|ZP_05552963.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716181|gb|EEU31156.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 436

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 105/366 (28%), Gaps = 54/366 (14%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F P  + +G   +VV       D    +R+           K L L          + 
Sbjct: 54  HEFDPANLKKG--MVVVQGNAFGDDHPEIVRA-----------KELGLTIQTYPQTVEQV 100

Query: 117 I-----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           I     + + G  GK+S    +  +      +S+ IG    +     D+R          
Sbjct: 101 IESNTSVGIAGAHGKTSTTGLLSHVLSNVEPTSYLIGD--GVGHGNPDSRFFVFEAD--- 155

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                           E   H L  H            TN+  DH DY +       A  
Sbjct: 156 ----------------EYRDHFLAYH------PDYAIMTNIDFDHPDYFKDIDDV-RASF 192

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             + + + K   A  + DD   +++     +          Q  F     V         
Sbjct: 193 EQYGQQVKKGIFA--WGDDPNLRQLK---VDVPVYYYGTNPQDDFRAENIVRTPAGSTYD 247

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               + K   F   L GE  V N+L    +     +D + + + L   + V  RF     
Sbjct: 248 AYYHDQKLGTFTIHLYGEHSVLNSLAVVAVAYMEHVDLSAIQKELADFNGVKRRFSESKL 307

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                 I  DYAH  + +   +   R       ++VVF                 AL  A
Sbjct: 308 GDM--TIIDDYAHHPSEINATIDAARQKYPDKELVVVFQPHTYSRLQAYLKEFGQALSKA 365

Query: 411 DIAIVT 416
           D   VT
Sbjct: 366 DQTFVT 371


>gi|222099429|ref|YP_002533997.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga neapolitana DSM
           4359]
 gi|254766030|sp|B9K6P8|MURC_THENN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221571819|gb|ACM22631.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga neapolitana DSM
           4359]
          Length = 457

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 17/235 (7%)

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
             +             TN   DH++ +  +   Y  A    FE +       I +A+D  
Sbjct: 160 ESEETFSEFSPNYLIITNARGDHLENYANSISRYRAA----FERISRNSDLVITFAEDEL 215

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQ 311
           +  +           ++ G +     L+   A  + Q+  I    K + +    +PG   
Sbjct: 216 TSHLGN---------VTFGVRKGMYTLEMRSASRSGQRAIIEKNRKRYAELKLRIPGFHN 266

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLE 370
           + NAL    L  ++G D   VL+ LE+   V  RF            +  DYAHT   ++
Sbjct: 267 ILNALAVTALFDSLGYDLEEVLKALERFPGVRRRFSISYHDPENNIYVVDDYAHTPEEIK 326

Query: 371 MILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +L+  + +     +VV F         +       AL LAD  IVT+     E+
Sbjct: 327 NLLQTAKEVFENEKVVVIFQPHRYSRLEREDGNFARALQLADEVIVTEVYDAFEE 381


>gi|193215589|ref|YP_001996788.1| Mur ligase middle domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089066|gb|ACF14341.1| Mur ligase middle domain protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 503

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 115/377 (30%), Gaps = 52/377 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALS 175
           + V+GT GK++  S +  +   + L S  +  G  +      + +               
Sbjct: 139 IVVSGTHGKTTTTSILAWLLDFAKLESGFLIGGIHANFGLGCRPSG-------------- 184

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                GV     +         R   +  +       N+  DH D   +      +  R 
Sbjct: 185 --RENGVFVTEGDEYDSAFFDKRSKFLHYRPDIAVINNIEFDHADIFASLADIELSFAR- 241

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+P+   A++YA ++   E  K +     +  S G +      + V   +       
Sbjct: 242 FVNLIPRNG-ALLYASNSLRAE--KLSKKCFAKTESFGLEAHAN-WQAVEIDYRSDVTEF 297

Query: 294 SVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           S+            PL GE  V N L A    +  G+    +   L        R E + 
Sbjct: 298 SILKNQTLLGKLRSPLFGEHNVRNVLAATAAAMHAGVRFEQIQAGLLAFQSPKRRLEILL 357

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
            N R   +  D+AH   ++   LK +     GR IV           +     ++    +
Sbjct: 358 QNDR-ATLIDDFAHHPTAIRETLKAVGQRFPGRRIVACFEPRSNTTTRNFFQKELSECFE 416

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-----------ML- 456
            AD+ I    N R E            I   +E   +   I  AI            +  
Sbjct: 417 HADVVIFGPVN-RPERYALEERLDTAAIVKSLEAEGK---IAYAIAVPPPENYVKDILAF 472

Query: 457 -----NKQDVLVVAGKG 468
                   DV+VV   G
Sbjct: 473 LKNVFQTGDVIVVLSNG 489


>gi|121606308|ref|YP_983637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595277|gb|ABM38716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 503

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 152/417 (36%), Gaps = 50/417 (11%)

Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           LSLFA  L        +   ++ +TGT+GK++V S   Q+ +R+G S    G        
Sbjct: 103 LSLFAQALADLKEDLAYAPKVVGITGTNGKTTVTSLTGQLIERAGKSVAVAGNIG----- 157

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                L       L +     S+       +E SS  LD   +   +    +  N+ +DH
Sbjct: 158 ---PTLLDTLTGKLDEHARDPSAALPEFWVLELSSFQLD--GVTNFEPDVATVLNITQDH 212

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-------------SKEVMKRAHNA 263
           +D+H+T  AY  AK      +  +    ++  +D                +  +    + 
Sbjct: 213 LDWHETLPAYAAAK----SHVYGRSGLMLLNRNDPLVMTAVPALVKGKPGRSYLTFGGDE 268

Query: 264 GCRVLSVGYQG--------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             R    G +         +     +       +++ + ++         + G     NA
Sbjct: 269 PKRPGDYGIETVNGMAWLVRAAEADETIKRRKAEELVLHIQRLMPLEALRIQGRHNATNA 328

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A GL +A+G   A +L  L +    P R E V      G  Y D +  +N +   +  
Sbjct: 329 LAALGLAVAVGCPLAPMLHGLREYRGEPHRVESVAVLE--GIEYFDDSKGTN-VGATVAA 385

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +  + S R +V+   G  + Q   P+   +A  +  + ++  D P       IRA +   
Sbjct: 386 LAGLGSERKLVLILGGEGKGQDFSPLADPVARYVRVVVLIGRDAP------LIRAALQGS 439

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               ++  +  EA+  A       D ++       +  +  N E +  V C+ ++E+
Sbjct: 440 RVELLDAASMQEAVSLAAGQARPGDAVL-MSPACASFDMFDNYEHRARVFCEAVQEL 495


>gi|170728854|ref|YP_001762880.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           woodyi ATCC 51908]
 gi|169814201|gb|ACA88785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella woodyi
           ATCC 51908]
          Length = 442

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 136/397 (34%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   ++         +  I V+ +      LFA  +  + P  ++ +TG++GKS
Sbjct: 67  ASQIIISPGIAVDTPEIRAAIDMGIEVIGDVE----LFARAVKDREP-CVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +GL+    G     +                      L  +      +
Sbjct: 122 TVTTLVGEMARVAGLNYAVGGNIGVPA--------------------LDLLREPRDLYIL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I  +  N+  DH+D +   +AY  AK+ L+     +   A+  
Sbjct: 162 ELSSFQLE--TTHSLNCIVATCLNISEDHMDRYTDLEAYRQAKLSLY----CQSKRALFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  ++       N      S G    F     V         T  +          L 
Sbjct: 216 REDELTEPKDPMNQN------SFGLSAPFNDEWGVRDGKVVHGTTEIMN----LLDVALV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L    G+D   +++       +  R E V  ++    +    A    
Sbjct: 266 GSHNHANLLAAMALAYHAGVDKESMIQVATTFTGLAHRCELVAVHNGVSYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+       G  I++   G  +    +P+   I   L+ +  +  D         
Sbjct: 326 ATVAALEGFSDHLGG--IILIAGGDGKGADFQPLQQAIHG-LSQLITLGKDG-------- 374

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +I       I   +  EA++TA E+    D++++
Sbjct: 375 --DKIAEFSEKAIRVSDMSEAVKTANELAEAGDIVLM 409


>gi|297623830|ref|YP_003705264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
 gi|297165010|gb|ADI14721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
          Length = 459

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 117/388 (30%), Gaps = 43/388 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V+  S  ++ G  F A+ G    G  +               +  +LQ  +A I S+ 
Sbjct: 27  RGVAFHSARVRPGDAFFALPGASSHGLRY---------------ADAALQAGAAFIVSDR 71

Query: 91  PI---LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           P    L V +  + L              ++ VTG++GK+S     + +   +  +    
Sbjct: 72  PHPRGLTVPDPARLLLQLGRVARAALQGPVIGVTGSAGKTST----RALLAAALGAHATR 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +T  + AQ                  +   G+ H        G     ++  +   G
Sbjct: 128 GNFNTPLALAQTLVEAWLEDRT-GAHDRLVLELGIDHT-------GEMDELVELTRPTLG 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   H+D   + +     K +L   +      A + A  AY      +      R+
Sbjct: 180 VVTLIAPAHLDGLGSVEGVAREKFKLLTGV----RHAWVSA-QAYPFLTPAQRAALQGRL 234

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFDFLFPLPGEFQVYNALVAAGLCI 323
              G  G+                + +  G            LP      NAL A  +  
Sbjct: 235 TVYGLDGRETPTGGEAKRVTGHFASAAGGGALHALGLRVPLALPSPALAENALCALAVAA 294

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSG 382
            +G+D A     L+   + PGR +       G    +D A+ SN   +            
Sbjct: 295 HLGVDPAAAAARLQGAVLEPGRLQRHQL---GALTLLDDAYNSNPASVRAALTALAALPR 351

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               V G   +       +   +A D A
Sbjct: 352 PHTAVLGDMLELGAASAELHRALAEDTA 379


>gi|258625125|ref|ZP_05720042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM603]
 gi|258582576|gb|EEW07408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
           VM603]
          Length = 440

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 141/399 (35%), Gaps = 57/399 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            + VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLAAGLPVVGDI-----ELFAWHVDKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKTAVGGNIGVPA--------------------LDLISPEVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           ADD  +       H A  +V++ G +          A H  ++   + +          L
Sbjct: 215 ADDVQTFP----DHAAHLQVVTFGVEQPAQF---SVAEHQGREYLFARDNAVLASSELSL 267

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+
Sbjct: 268 VGRHNVANVLTVLALLDSAGVNVRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN 326

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTDDNPRSEDP 425
            +  +   +   I     ++V G G   D     P+   + L L    +  D        
Sbjct: 327 VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVFATLPLQLCCFGVDGD-------- 378

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                + +   P      +    IR+    L   D++++
Sbjct: 379 -----KFMPLHPSARFYDSMESIIRSIRPELKSGDMVLL 412


>gi|254480308|ref|ZP_05093556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
 gi|214039870|gb|EEB80529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
          Length = 455

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 134/397 (33%), Gaps = 48/397 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++VS   ++ +      +   + VV +              +    I+ +TG++ KS
Sbjct: 76  ATELIVSPGIAIDEPVVAHAALAGVKVVGDI--------DLFVREAKAPIIGITGSNAKS 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V  + +R+ L+    G   T +                      L         +
Sbjct: 128 TVTELVGDMARRAKLNVGVGGNLGTPA--------------------LDLLDDERQLYVL 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R   + L      NL  DH+D H     Y  AK R+F       S A+ +
Sbjct: 168 ELSSFQLE--RAGKLGLAVAVVLNLSADHLDRHGNMPRYHQAKHRIFMGC----STAVAH 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD  +  +++ +       L       F   +            + +   +        
Sbjct: 222 SDDPLTVPLLEDSVPVVGWRLGEPALNGFGLRRDQGVECLSHGFELLMPVTELAME---- 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A  L  A G+    +L+ L     +P R E V         +V+ +  +N
Sbjct: 278 GRHNVANALAALALGHAAGLPLDAMLDSLRHFAGLPHRCERVAVIE--AVCFVNDSKGTN 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +      +  I     IV+   G  +    R + G +      + ++ +D P+ E    
Sbjct: 336 -IGATNAALTGIGGEHNIVLIAGGQGKGADFRELRGTVQKHCKHVVLIGEDAPKIEAA-- 392

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  +          +A+  A +  +  D++++
Sbjct: 393 -----LADVVEVTRVDTMEQAVALAEKQASAGDIVLL 424


>gi|288919054|ref|ZP_06413395.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
 gi|288349594|gb|EFC83830.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
          Length = 500

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 137/442 (30%), Gaps = 65/442 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VV+ A   +D      +    L +      L+       G      +AV G+ GK
Sbjct: 73  GVDLVVVAPAVPAED-PELAEARRRELRILTRSAALAGLMQGHRG------VAVAGSHGK 125

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++VA  +    Q  G       PT  +     +    T +                  + 
Sbjct: 126 TTVAMMLTAALQACGED-----PTFAVGGDPGEAGSQTHAGSS-------------DLMI 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA   G    +L   +      T +  +H+D+++T  A   A    F   +  +   + 
Sbjct: 168 VEADEDGGAFWQL---QPHGAVLTGVADEHLDFYRTVPA-LRASFATFLHRVEPDGLLVA 223

Query: 247 YADDAYSKEVMKRA---------------------------HNAGCRVLSVGYQGKFIHL 279
             DD  +  +   A                                     G       +
Sbjct: 224 CVDDEAAWSLAAEAARQAARAAEAAGTGLGVGTGVAGRSGGRGPWLTGYGFGPSADVRVV 283

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               +        I+   +       +PG   + +A  A    +A+G  +  +L  L   
Sbjct: 284 AAEVSTAGTSAEIIAHGVRLGRMSLRVPGRHHLLDAAAALATGLALGAPADGLLAGLASF 343

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGK 398
             V  RFE +G+ + G R+  DYA+  + +   +   R +  G  +VV F          
Sbjct: 344 AGVRRRFEPLGSAA-GVRVVDDYANHPDRVTAAISTARALAGGGRVVVAFQPHLYSRTAL 402

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIPGFIEKGNRIEAIR-TA 452
                  AL  AD  +V D    ++ PE        A    G    ++      A+    
Sbjct: 403 LAERLGEALRSADSVVVMDVYGAAQAPEPGAGGARVALAARGGQAEVDYEPSWSAVPGRL 462

Query: 453 IEMLNKQDVLVVAGKGHETVHI 474
           ++     DV++  G G  T  I
Sbjct: 463 MDRARPGDVVLTLGAGDVT-QI 483


>gi|123965256|ref|YP_001010337.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123199622|gb|ABM71230.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 469

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 141/428 (32%), Gaps = 59/428 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            V+SSA    +          +L+   + + L++             L++ G+ GK+S +
Sbjct: 79  FVISSAIKDDNEELCFCKKNNLLIKHRS-EILAMIMKSYI------TLSIAGSHGKTSTS 131

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +F+  + +     S  I  T  I    + N     +   +               +    
Sbjct: 132 TFLSTLLELCTHDSSSI--TGGIIPIYKSNAHIENTKYLV---------------TEIDE 174

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S G   +         G   N+  DH D++       ++    F++        +I  D 
Sbjct: 175 SDGTINNYTS----NIGIINNIDFDHCDHYSNIDEILSS----FKQFASNSKKLLINYDC 226

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPG 308
             ++E             S+  +    +      I+    +    E  DF      P+PG
Sbjct: 227 KITRENF-----TSHNQWSIKEKNNITYSIIPNTINKDITIGKYYEHGDFVDSINIPIPG 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N   A   C  IG+    + ++++ L +   RFEF G  ++    Y DYAH  N 
Sbjct: 282 LHNLSNITAAIAACRMIGVSFKEIKKNIKSLELPKKRFEFRGELNQ-RVFYDDYAHHPNE 340

Query: 369 LEMILKNIRTI---------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           ++  +   R             GR+I +F         +        L  AD+  +T+  
Sbjct: 341 IKATIDLARLFIIDNNINKNQKGRLIAIFQPHRFTRVKQFIHEFVQELSKADVIYLTNIF 400

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG--HE 470
              E+       + I   I           N  E I+    ++  + D ++  G G  H+
Sbjct: 401 GAGEENIDNINSQVIANLIYKKNKNVTCLKNNYE-IKDKFFKLTKENDFILNMGAGDCHK 459

Query: 471 TVHIVTNG 478
              I+ N 
Sbjct: 460 LWSILNNK 467


>gi|332710219|ref|ZP_08430170.1| cyanophycin synthetase [Lyngbya majuscula 3L]
 gi|332350998|gb|EGJ30587.1| cyanophycin synthetase [Lyngbya majuscula 3L]
          Length = 892

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 121/357 (33%), Gaps = 29/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T   +  +  +          A   L    V    +E + 
Sbjct: 503 LIAHIYRQTGKV---VGYTTTDGIYIDEYVVEKGDTTGPQSAQVILKDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L   K   G   N+  DH+           AK++ +  E++  +  AI+ ADD
Sbjct: 560 GGILRSGLAFDKCDIGVVLNVSADHLGLGDINTIEQMAKVKSIVAEVVSPKGYAILNADD 619

Query: 251 AYSKEVMKRAH-----------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              + + ++             N   +  + G     ++     +I          E  +
Sbjct: 620 PLVRAMAEKVKGQVAYFSMNSENELIKNHTSGGGLAAVYENGYLSIIKGDWTLRIDEAVN 679

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRG 355
                     F + NAL A+    A G+    + E L          PGR       S  
Sbjct: 680 VPVTIGGRAPFMIANALAASLAAFAQGVSIEAIREALTTFRASVDQTPGRMNLFNLGSYH 739

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH + S E +   +R    G    + G  GDR       +G+++  + D  I+
Sbjct: 740 ALV--DYAHNAASYEALGSFVRNW-PGECFGIVGGPGDRRNEDFIELGRLSAKIFDRIII 796

Query: 416 -TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             DD+ R          I  GI        +       EAI   ++ +    ++V+ 
Sbjct: 797 KEDDDLRGRPSGDAAELICKGIGQEKSESNYEIILRETEAIERGLDKVADGGLVVIL 853


>gi|299131927|ref|ZP_07025122.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Afipia sp. 1NLS2]
 gi|298592064|gb|EFI52264.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Afipia sp. 1NLS2]
          Length = 465

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 109/299 (36%), Gaps = 34/299 (11%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    +S  +     I V+ +   F      R         +A+TGT+GKS+  +    +
Sbjct: 79  HPAPHWSVEMAHKAGIEVIGDVELFCRE---RRRHAPSAPFVAITGTNGKSTTTALTAHL 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +++G      G   T                     LS           +E SS+ +D 
Sbjct: 136 MRQAGFDVQMGGNIGT-------------------AILSLEPPAARRVHVIEMSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +    G   N+  DHID H + + Y   K RL    + +   AI+  DD +S + 
Sbjct: 177 --TPSLDPSVGILLNVTEDHIDRHGSIENYAEVKERLVVG-VQRGGTAIVGVDDDFSAKA 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFDFLFPLPGEFQV 312
            + A  AG  V++V  Q     L     +  +  V  +  G     D   +  L G    
Sbjct: 234 ARNAELAGKHVVTVSVQ---RRLDNGVFLEGETIVRGAAGGTAKLVDLRGIGSLRGRHNA 290

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            NA  AA   +A+G+   +V   L     +  R E VG   +G  ++V+ +  +N+   
Sbjct: 291 QNAACAASAALALGVPFDVVQRGLRSFPGLAHRMEQVG--RKGEVLFVNDSKGTNADAA 347


>gi|119773906|ref|YP_926646.1| UDP-N-acetylmuramate [Shewanella amazonensis SB2B]
 gi|119766406|gb|ABL98976.1| UDP-N-acetylmuramate [Shewanella amazonensis SB2B]
          Length = 458

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 96/299 (32%), Gaps = 20/299 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK+S +S +  + +  G     +     +      +     SP ++ +
Sbjct: 101 PGRWVLAVAGTHGKTSTSSMLAWVLEHCGYEPGFL--IGGVPQNFGVSARLGNSPFFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                       +       NL  DH D   +          
Sbjct: 159 ADEYDSAFFDKRSKFVHY------------QPKTLVINNLEFDHADIFDSLADIQRQFSH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +    +P     I         EV+++         +  +Q       +  A     +  
Sbjct: 207 VI-RTVPGCGKVIWPKGSKAVAEVIEK--GLWSEQETFSHQADADWSVRPLAAD-GHKFE 262

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G+    L + L G   + NA++A      +G+  A  +E L        R E +G 
Sbjct: 263 VLFGGEVQGVLDWQLIGNHNMENAVMAIAAARHVGVAPAAAIEALSGFMPPKRRLELIGE 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              G  +Y D+AH   ++E  LK +R       I V          +      +AL +A
Sbjct: 323 VG-GVSLYDDFAHHPTAIETTLKGLRAKVGNARIFVVLEPRSNTMKRGVHKDTLALSMA 380


>gi|238757553|ref|ZP_04618738.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia aldovae ATCC 35236]
 gi|238704315|gb|EEP96847.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia aldovae ATCC 35236]
          Length = 461

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 119/364 (32%), Gaps = 36/364 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLTWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+  +D   K+VM  A         VG  G +   K            
Sbjct: 207 LV-RLVPGKGKIIVPDNDNPLKQVM--AMGCWSEQELVGETGSWFARKVAVD---ASVFE 260

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++ +   +  + L GE  ++N L+A      +G+  A     L        R E  G 
Sbjct: 261 VFLDNELVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINARRRLELRG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LD 408
            + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L 
Sbjct: 320 EAHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLG 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVV 464
            AD   +         P+ I  +++      I+  +    I T ++M        D ++V
Sbjct: 380 RADEVFLFQ-------PQHIPWQVVEVAEACIQPAHWSADIDTLVDMITKTALPGDHILV 432

Query: 465 AGKG 468
              G
Sbjct: 433 MSNG 436


>gi|311748588|ref|ZP_07722373.1| UDP-N-acetylmuramate--alanine ligase [Algoriphagus sp. PR1]
 gi|126577112|gb|EAZ81360.1| UDP-N-acetylmuramate--alanine ligase [Algoriphagus sp. PR1]
          Length = 470

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 124/358 (34%), Gaps = 28/358 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++ +S +  + +  G           +    Q+ +            L  
Sbjct: 115 TIAVAGTHGKTTTSSLIAHLLKDGGKPVAAF-----LGGITQNYQSNL--------ILGD 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S+  + V VEA        RL          T+   DH+D +  +          F +
Sbjct: 162 KKSKEKSVVVVEADEFDRSFLRL---HPNEAIITSTDADHLDIYGDENTILEGFGE-FTK 217

Query: 237 LLPKESPAII--YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           L+ K+    I   A D   +  + +       + S G + + I  K    + +       
Sbjct: 218 LIDKKGKLFIQFNAADRLGESRLPKIVTRKYGLRSEGIRAENIQAKAGSFLFDYVDGDKV 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++G +      +PG   V NAL A  + I  G+    V + L     V  RFE +  N  
Sbjct: 278 IKGLE----LFIPGFHNVENALAAIAIAIEQGVSDEQVKKGLGSFKGVKRRFE-IHVNRE 332

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIA 413
                 DYAH    +   L ++  +     + V+F                 +L LAD  
Sbjct: 333 QLVYIDDYAHHPEEIRACLSSVIAMYPASKLTVIFQPHLYSRTRDFAEGFSESLSLADEV 392

Query: 414 IVTDDNPRSEDP-EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           ++ D  P  E P   + +E+ +  I    +     E +   +   N + +LV  G G 
Sbjct: 393 VLLDIYPARELPIPGVSSEMLLENIQAKEKVIVSKEGLMDYLAKSNPE-ILVTLGAGD 449


>gi|182677683|ref|YP_001831829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633566|gb|ACB94340.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 462

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 113/365 (30%), Gaps = 50/365 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKF----LSLFASRLY 110
             A A+G E + +S A   Q  +  +    P+        V+  R      +        
Sbjct: 46  ETAKAKGLEVLDLSQADWSQFCALVLAPGVPLTHPKPHWTVEKARAAGIEIIGDIELFCR 105

Query: 111 GK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            +         +A+TGT+GKS+  + V  + Q  G      G   T              
Sbjct: 106 ERRLIAPKSPFVAITGTNGKSTTTALVAHLFQTFGYEVAIGGNIGT-------------- 151

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                  L+           +E SS  +D      +    G   N+  DH+D H T + Y
Sbjct: 152 -----PILALEPPSPTRVHVIECSSFQIDL--TPTLDPWVGVLLNITPDHLDRHGTMENY 204

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
              K RL    +     A+I  DD     + +           V      +    +    
Sbjct: 205 AAIKARL----VMGADKAVICLDDEPCVAIAETLRQKHKPSTFVSISHPELRDGIILD-- 258

Query: 287 NKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               +   V+G          +  L G     NA  A     A G +  LV + LE    
Sbjct: 259 -GTTLVRHVDGGSVVIADLAGIASLRGRHNGQNAAAAVAALGAHGYNLDLVRKGLESFPG 317

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +P R E VG       +    A  +++ E  L +   I     I+            RP+
Sbjct: 318 LPHRLEEVGRLGNVLFVNDSKATNADAAEKALLSFENI---FWILGGKPKAGGIDPLRPL 374

Query: 402 MGKIA 406
            GKIA
Sbjct: 375 FGKIA 379


>gi|319424766|gb|ADV52840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella
           putrefaciens 200]
          Length = 439

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 113/334 (33%), Gaps = 47/334 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +L         +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ASQIIISPGIALDTAEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L S+      +
Sbjct: 122 TVTTLVGEMLREAGMAVAVGGNIGVPA--------------------LDLLSENAEIFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +        I  
Sbjct: 162 ELSSFQLE--TTHSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ----SRSIIFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDA +        N      S G    +G    +      H + ++    E        
Sbjct: 216 RDDALTIPTEPMNQN------SFGLAPPEGDEWGICDSKIYHGRSEIMPITE-------V 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  L  A+G+D  ++ +       +  R E VG       +    A 
Sbjct: 263 SLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTFTGLSHRCEVVGIKGGVTYVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +    L  +       I++  G G   D   
Sbjct: 323 NVGATVAALDGLSDHLGDIILIAGGDGKGADFSP 356


>gi|28378181|ref|NP_785073.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           WCFS1]
 gi|38258048|sp|Q88WZ5|MURC_LACPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28271016|emb|CAD63921.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus plantarum
           WCFS1]
          Length = 436

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 111/399 (27%), Gaps = 60/399 (15%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V    +FL               + V GT GK+S    +  +      +S+ IG  + 
Sbjct: 88  LPVYRYHEFLGKLMEGF------TSIGVAGTHGKTSTTGLLSHVLSHIAPTSYLIGDGTG 141

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +         P   +            V +                         TN+
Sbjct: 142 KGT---------PDARFFVFEADEYRRHFVAYH------------------PDYAIMTNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH DY++      +A  + F   + K   A  + DD   + +     +    +   G 
Sbjct: 175 DFDHPDYYKDLADVQSA-FQQFGNQVKKGIFA--WGDDESLRHL-----DVDTPIYYYGT 226

Query: 273 QG-KFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                     +          +    +    F  PL GE  V N+     +     ++  
Sbjct: 227 NDRDDFQAVNIKRTTKGSSFEVKYHDESLGKFEIPLFGEHNVLNSTAVIAVSYFEKVNLD 286

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG 389
            +   L     V  RF           +  DYAH  + ++  L   R       I+ VF 
Sbjct: 287 EIRRELLDFSGVKRRFSEHQVGDM--VMIDDYAHHPSEIKATLDAARQKYPDKEILAVFQ 344

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHGIPGFIEK--GNR 445
                           +L  AD   +T+  +   E    +   ++   +P   E    + 
Sbjct: 345 PHTFSRTKALMDGFAASLSKADHVFLTNIFSSAREKSGDVSSKDLAAKLPNGGEIITTDD 404

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           + A+ TA        V V  G G      +   EK    
Sbjct: 405 MSAL-TAYHNA----VAVFMGAGD-----IQKYEKIYED 433


>gi|254382594|ref|ZP_04997952.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           Mg1]
 gi|194341497|gb|EDX22463.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           Mg1]
          Length = 481

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 157/454 (34%), Gaps = 49/454 (10%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G   DG     + + +G E +V S  +          +   + VV +      L  S   
Sbjct: 60  GRLADGA-HAGEVLPEGTELVVTSPGWKPDSPLFAAAAEAGVDVVGDVEIAWQLRGST-P 117

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G+     LA+TGT+GK++    +  I + +GL +  +G   T                  
Sbjct: 118 GRKAAPWLAITGTNGKTTTTQMLASILKAAGLRTAAVGNIGT------------------ 159

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +  + +    +  +         H    ++  + +  NL  DH+D+H + +AY   K
Sbjct: 160 --PIVDVVTGEEEYDVLAVELSSYQLHWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADK 217

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            R++E      +     AD A    V +     GCR +          +  V       +
Sbjct: 218 GRIYEGNTV--ACVYNVADRATEDLVGEADVEEGCRAIGFTLGAPGPSMLGVVDGILVDR 275

Query: 291 VTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +    K+   L        P    + NAL AA L  A G++   V + L        R
Sbjct: 276 AFVENRQKNAQELAEVKDVNPPAPHNIANALAAAALARAFGVEPRAVRDGLRNFRPDAHR 335

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                 +  GG +YVD +  +N+          + +   +V    G  +      ++ K 
Sbjct: 336 --VAHVDEVGGVVYVDDSKATNTHAAEAS----LAAFETVVWIAGGLAKGATFDELVRKS 389

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGN---RIEAIRTAIEMLNK 458
           A  L  + ++  D         I   +    P      +E+ +    + A+R A  +   
Sbjct: 390 AKGLRGVVLIGADR------ALIAEALARHAPEVPVVDLERTDTGAMLAAVREAARLAEP 443

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            D +++A     ++ +  N  K+     D +RE+
Sbjct: 444 GDTVLLA-PACASMDMFANYNKRGDAFADAVREL 476


>gi|16767662|ref|NP_463277.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167551340|ref|ZP_02345095.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167991193|ref|ZP_02572292.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197248271|ref|YP_002149331.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263966|ref|ZP_03164040.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|200389114|ref|ZP_03215726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|238910573|ref|ZP_04654410.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|16422979|gb|AAL23236.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197211974|gb|ACH49371.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242221|gb|EDY24841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|199606212|gb|EDZ04757.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205323947|gb|EDZ11786.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330336|gb|EDZ17100.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249506|emb|CBG27371.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996754|gb|ACY91639.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160903|emb|CBW20435.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915513|dbj|BAJ39487.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222618|gb|EFX47690.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615578|gb|EFY12498.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618638|gb|EFY15527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322621949|gb|EFY18799.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627673|gb|EFY24464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630980|gb|EFY27744.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637801|gb|EFY34502.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643966|gb|EFY40514.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650959|gb|EFY47344.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656789|gb|EFY53077.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659787|gb|EFY56030.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662002|gb|EFY58218.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666249|gb|EFY62427.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672669|gb|EFY68780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676099|gb|EFY72170.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680583|gb|EFY76621.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684523|gb|EFY80527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132753|gb|ADX20183.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192838|gb|EFZ78064.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197286|gb|EFZ82426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201597|gb|EFZ86661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206111|gb|EFZ91073.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213119|gb|EFZ97921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215493|gb|EGA00237.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219478|gb|EGA03963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227781|gb|EGA11935.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228951|gb|EGA13080.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236437|gb|EGA20513.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241891|gb|EGA25920.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247960|gb|EGA31897.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251402|gb|EGA35273.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258232|gb|EGA41909.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263622|gb|EGA47143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265782|gb|EGA49278.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270226|gb|EGA53674.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|332991227|gb|AEF10210.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 459

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|313202239|ref|YP_004040897.1| UDP-N-acetylmuramate [Methylovorus sp. MP688]
 gi|312441555|gb|ADQ85661.1| UDP-N-acetylmuramate [Methylovorus sp. MP688]
          Length = 457

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 116/368 (31%), Gaps = 20/368 (5%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +     + +LAV GT GK++ +S +  I + +GL+   +     I    Q+  +
Sbjct: 93  QWLAENVLRD--KWVLAVAGTHGKTTTSSMLAWILEYAGLAPGFL-----IGGVPQNFDI 145

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P    +     S   V       ++    + +    +       NL  DH D    
Sbjct: 146 SARLPGAPRQEPQGRSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD 205

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P++   +    +   + V+ R       V + G           
Sbjct: 206 LAAI-ETQFHHLVRTVPQQGLVVANGREESLQRVIAR--GCWTPVETFG---DAHGWHAG 259

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            A        I  E       + L GE    NAL A      +G+   + +  L +   V
Sbjct: 260 AADAEGSFDVIQGEQVLGRVQWSLLGEHNRMNALAALAAARHVGVPVEVGIAALAEFQNV 319

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E  G   +G  +Y D+AH   ++   L+ +R       I+              + 
Sbjct: 320 KRRMEVRG-EVKGITVYDDFAHHPTAITTTLEGLRAKVGASRILAVLEPRSNTMKLGVMK 378

Query: 403 GK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
                +L  AD       N   +  E +  ++        +    +EAI          D
Sbjct: 379 AALPASLKSADRVYCYGANLGWDAAEALH-DMGEIALVETDMTKLVEAIAR---EARSGD 434

Query: 461 VLVVAGKG 468
            ++V   G
Sbjct: 435 HILVMSNG 442


>gi|300935900|ref|ZP_07150856.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 21-1]
 gi|300458919|gb|EFK22412.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 21-1]
          Length = 445

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 118/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 135 ARLGESNFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 195 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 250

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 251 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 309 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 368

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++   +   +      G+        ++     D ++V   G
Sbjct: 369 ADEVFLLQ--PAH-IPWQVAEVVEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 424


>gi|332312486|gb|EGJ25581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. Scott A]
          Length = 461

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 105/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 169 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ADD 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 226 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGARD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 279 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++       A I          
Sbjct: 338 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKALIVF-------G 386

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGID--VHYVDNVEAAVPVAYRESAPGDIILL 428


>gi|168464693|ref|ZP_02698596.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195632876|gb|EDX51330.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 457

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|120597219|ref|YP_961793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. W3-18-1]
 gi|120557312|gb|ABM23239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           W3-18-1]
          Length = 439

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 113/334 (33%), Gaps = 47/334 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +L         +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ASQIIISPGIALDTAEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L S+      +
Sbjct: 122 TVTTLVGEMLREAGMAVAVGGNIGVPA--------------------LDLLSENAEIFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +        I  
Sbjct: 162 ELSSFQLE--TTHSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ----SRSIIFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDA +        N      S G    +G    +      H + ++    E        
Sbjct: 216 RDDALTIPTEPMNQN------SFGLAPPEGDEWGICDSKIYHGRSEIMPITE-------V 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  L  A+G+D  ++ +       +  R E VG       +    A 
Sbjct: 263 SLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTFTGLSHRCEVVGIKGGVTYVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +    L  +       I++  G G   D   
Sbjct: 323 NVGATVAALDGLSDHLGDIILIAGGDGKGADFSP 356


>gi|149183844|ref|ZP_01862239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           SG-1]
 gi|148848443|gb|EDL62698.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           SG-1]
          Length = 449

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 112/334 (33%), Gaps = 41/334 (12%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V ++  + G      G   T++S   +   T      +   LS     G          
Sbjct: 129 LVHEMLDKGGKQPLIAGNIGTVAS---EVAQTAKEENNIVIELSSFQLMG---------- 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                  ++  +     FTNL   H+DYH + + Y  AK  +      K+   +I AD  
Sbjct: 176 -------IEEFRPKISIFTNLYEAHLDYHGSIEDYAKAKANITANQT-KDDYLVINADQP 227

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              E++  +        +     K   +K     ++  ++  +        L  LPG+  
Sbjct: 228 ELAELLSFSKAQKIYFSTRRPLEKGASIKDGAIYYDDDKIMETS-------LIALPGKHN 280

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A       G+ +  + E L+    V  R +FV T    GR + + +  +N L  
Sbjct: 281 LENILCAVIAAKLSGVSNEAIQEVLKTFTGVKHRTQFVRT--LNGRSFYNDSKATNVLAA 338

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA- 430
               +         ++   G DR      ++  +    A   ++T      E   K    
Sbjct: 339 K-SALEAFDQPT--ILLAGGLDRGNSFDELIPYLKNVKA---LIT----FGETAVKFLET 388

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               GI       N   A+  A E+  + DV+++
Sbjct: 389 AAKAGIQTVKRVDNVEAAVPAAYEISEEGDVILL 422


>gi|259503032|ref|ZP_05745934.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           antri DSM 16041]
 gi|259168898|gb|EEW53393.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           antri DSM 16041]
          Length = 459

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 143/411 (34%), Gaps = 51/411 (12%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----------LSLFASRLYGKH 113
             G E I  S+  SL D    +    P +  DN                +     ++  H
Sbjct: 55  EAGIEVITGSNPLSLADRDFAVVVKNPGIPYDNPLVAKFVEKGTPIITEAELGWEIFAGH 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +++VTG++GK++  +  Q +  +S  S+  +     I                L   
Sbjct: 115 ---LVSVTGSNGKTTTTTLTQLMLAKS--STHNVKYAGNIGVSFSKVAEDLGPDDTLVTE 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS     G                    I       TN+  +H+DYH+T++ Y NAK+ +
Sbjct: 170 LSSFQLLGA-----------------PTIHPHIAIITNIFSNHLDYHKTRENYINAKLNI 212

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                P +   + +  D + +E+ +R                  + +        +++  
Sbjct: 213 TRNQTPDDFLIMNWDRDEW-QEIARRTRATVVPFSRQNKSQAGAYEEDGVIYWRGERIMA 271

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + +         L G   V NAL A       G+ +A ++  L     V  R ++V  + 
Sbjct: 272 AKD-------IRLIGPQNVENALAAVAAAKLSGVSNADIVSVLTTFSGVRHRLQYV-LDY 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +G R Y D    S  +E     ++       +++   G DR      ++      +  I 
Sbjct: 324 QGRRFYNDSK--STDIEATEVALQGFEQP--VILLAGGLDRGYTFERLVPYFKQHVKGII 379

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        +D  K  AE   GIP  IE  N + A+  A ++    DV+++
Sbjct: 380 VFGQ----CKDKMKNAAE-QAGIPTIIESENAVTAVPEAWKISAPGDVILL 425


>gi|255017880|ref|ZP_05290006.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           F2-515]
          Length = 295

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 103/302 (34%), Gaps = 38/302 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +      +S+ IG  +   +                      
Sbjct: 19  IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGT---------------------- 56

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   + ++EA  +   +H L   K      TN+  DH DY ++    FNA    FE L
Sbjct: 57  --KDAEYFALEACEYQ--RHFLAY-KPTYAIMTNIDWDHPDYFKSVDDVFNA----FETL 107

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A+    D    E+ K   +        G + +F   K V       +  +    
Sbjct: 108 GKQVKKAVFALGDD--AELRKLTLDIPIIYFGFGEENEFQ-AKNVIKETTGTKFDVYHRE 164

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    F  P  G+  V NAL    LC   G+    V   L+    V  RF    T     
Sbjct: 165 EFLSSFEIPAYGDHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVKRRFSI--TEKGNQ 222

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH  + +   +   R      +++ VF                 +L+LAD   +
Sbjct: 223 VLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYL 282

Query: 416 TD 417
            D
Sbjct: 283 CD 284


>gi|261253809|ref|ZP_05946382.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio orientalis
           CIP 102891]
 gi|260937200|gb|EEX93189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio orientalis
           CIP 102891]
          Length = 440

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 135/403 (33%), Gaps = 67/403 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +         +    K    ++A+TG++GKS
Sbjct: 71  ADLVVANPGIALATPEIQQVLQAGIPVVGDI-----ELFAWQVDKP---VIAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V  +   + + SGL     G     +                                +
Sbjct: 123 TVTDWTGCVAKASGLKVGVGGNIGVPALDLLQLDADL--------------------YVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +F NL  DH+D +     Y  AK+R+F++        ++ 
Sbjct: 163 ELSSFQLE--TTSSLKPAAATFLNLSEDHMDRYDGMSDYRQAKLRIFQQ----AKTCVVN 216

Query: 248 ADD-----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           ADD        + V++ +     R   V  +G   +L          Q            
Sbjct: 217 ADDTQTYPDDDRNVVEFSLVEQTRYHLV-TEGDVEYLAIADRKLCPTQA----------- 264

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G   V NALV   L    G+D    L+ L+  + +  R + V  N  G +   D 
Sbjct: 265 -LSLVGRHNVANALVVLALLTESGVDITSGLDALKSYNGLTHRCQVVADN-HGVKWVNDS 322

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTDDNPR 421
             T+ +  +       +     ++V G G   D  + +P++  + + L            
Sbjct: 323 KATNVASTLAALAGLELAGKLYLLVGGVGKGADFSELKPVLSSLNVQLCCF--------- 373

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ED      E +   P      +  E +      +   D++++
Sbjct: 374 GED----GNEFVPLHPSAKSFTSMQEIVEWLAPQVESGDMVLL 412


>gi|46446881|ref|YP_008246.1| putative UDP-N-acetylmuramate-alanine ligase murC [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|59798298|sp|Q6MBS8|MURC_PARUW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46400522|emb|CAF23971.1| putative UDP-N-acetylmuramate-alanine ligase murC [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 454

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 92/443 (20%), Positives = 149/443 (33%), Gaps = 60/443 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P  I  G   ++ SS     +       N       +      L A     K   
Sbjct: 53  GHS--PSYITSG-STVIYSSDIKTDNPEYLAAKNLQC----SLLHRAELLALLTRQK--- 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             LAVTGT GK++ +S +      +    SF +G    I  F  + +            L
Sbjct: 103 KSLAVTGTHGKTTTSSLLATTLLEANCDSSFAVG--GIIPQFQSNAKHGLGD-------L 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               +       ++   +G                TN+  DH++ ++  +       + F
Sbjct: 154 FVFEADESDRSFLKYFPYG-------------AIVTNIDNDHLNSYENSEDVLIQSFQQF 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +   +      DD + K +            S G+ G+  + +          +   
Sbjct: 201 TSQISSPNHLFWCGDDTHLKFLNGIGQ-------SYGF-GEHCNWRISNVFQKDFNLEFD 252

Query: 295 VEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +EG +         L G   + N     GL +++ I  A +    E+   V  R E+ G 
Sbjct: 253 LEGNEKKYPSIKLNLIGRHNLLNGAAVFGLAMSLNISEASIRHTFERFCGVLRRCEYKGE 312

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCG-GDRDQGKRPIMGKIALDL 409
                    DYAH    ++  L+ IR  I S R+I VF      R +    + GKI  + 
Sbjct: 313 FEN-TIFLDDYAHHPTEIQTTLEGIRKAIKSKRLIAVFQPHRFSRIKDCLGMYGKI-FNN 370

Query: 410 ADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-----EMLNKQDVLV 463
           AD   VTD     E P E I  + I                RTA+     E +   DV+V
Sbjct: 371 ADEVFVTDVYGAGETPIEGISQQQIIQEISENSSVPVKYVPRTALGHKLSEFIQPLDVIV 430

Query: 464 VAGKGH------ETVHIVTNGEK 480
             G G       ET+ ++ NG++
Sbjct: 431 TLGAGDVTKVASETLSLLENGKR 453


>gi|307298498|ref|ZP_07578301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915663|gb|EFN46047.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 441

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 146/383 (38%), Gaps = 50/383 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L+ K    ++ VTGT+GKS+  + ++ I        FQ G                    
Sbjct: 103 LWSKPRGTVIGVTGTNGKSTTVTMLRHIISGKNRKVFQGG-------------------- 142

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L+ ++ +   +  +E SS  L     + ++    +  NLG DH+DYH++   YF 
Sbjct: 143 NLGYPLAGVAEEVYDYYVLEVSSFQLKWFAEERVRFHLSAVINLGEDHLDYHRSIDDYFK 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K+RL +            AD    KE++K +       L  G+        +V  I  +
Sbjct: 203 SKLRLAKMTEGITVVPKAVADC--QKELLKGSKLRPFVALGEGFDSFDREHLRVRGIEFR 260

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                           P  G     N LV   +   IG+ +  V + L+    +  R + 
Sbjct: 261 TS------------DLPFTGLHNYENVLVVLLISQLIGLSAEDVFQELKSYTFLSHRLQL 308

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V      G  Y D +  +N+   +   +R+    + I++   G ++D+    ++ ++   
Sbjct: 309 V--RELEGVKYYDDSKATNA-HAVSAALRSFEPSKTILIL-GGREKDETYSELIEQL-GQ 363

Query: 409 LADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           L  + ++           KI +    + GIP      N  +A++    +  K D +V++ 
Sbjct: 364 LKHVVMLGSS-------MKILSAKLQMRGIP-VSGAANMADAVKICRGLAAKGDNVVLSP 415

Query: 467 KGHETVHIVTNGEKKMSVDCDII 489
            G  +  +  N  ++ +   +I+
Sbjct: 416 AGS-SYDLYINYSERGNHFREIV 437


>gi|197116887|ref|YP_002137314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
 gi|226711912|sp|B5EBP9|MURD_GEOBB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197086247|gb|ACH37518.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
          Length = 452

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 146/426 (34%), Gaps = 52/426 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS    +      +  +    VV          AS         ++A+TGT+GK+
Sbjct: 69  ADLIVVSPGVPMDIKPLEMARSQKRRVVSEV-----ELASWFIK---APMVAITGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   +I +  G  +F  G                         L  L+  G     V
Sbjct: 121 TTTTLTGEIFKACGFETFVGGNIGN--------------------PLIELAESGQEVSRV 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      ++  +       N+  DH+D + + Q Y +AK+R+FE     +  A++ 
Sbjct: 161 VVELSSFQLEGVESFRPDVAVLLNITEDHLDRYHSFQEYIDAKLRIFENQT-ADDFAVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LF 304
            DD        +       +  +       H  +    +    +T S +GK   F    F
Sbjct: 220 IDDPLVAACASKLKAQLFPMSRL-------HELEEGISYRDGFITFSHKGKVLRFGTEGF 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   + N + +    + +  D     E ++    +P R E V      G  Y + + 
Sbjct: 273 KLKGVHNLDNIMASLASTLLMRCDGDCAYEAVKNFKGLPHRMELV--EEIDGVAYYEDSK 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +N +  ++K++ +  SG  I +   G D+     P+   +   ++ + ++ +   R   
Sbjct: 331 GTN-VGSVVKSLESFDSG--ITLIAGGKDKGGSYEPLAPLVESRVSHLVLIGEAKAR--- 384

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
                 E +  +          EA+  +  +     V++ +     +  +  N E++   
Sbjct: 385 ----MNEALGSLTDTHLAETLEEAVEISRRLTKPGGVVLFSPACS-SFDMFKNYEERAQR 439

Query: 485 DCDIIR 490
               +R
Sbjct: 440 FKAAVR 445


>gi|322642363|gb|EFY38968.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
          Length = 453

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|333010253|gb|EGK29686.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri VA-6]
          Length = 457

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 118/361 (32%), Gaps = 30/361 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV GT GK++ A     I ++ G     +     I     +  ++         
Sbjct: 101 HDRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS--------- 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       +  +         R   +          NL  DH D     +A     
Sbjct: 147 --ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +
Sbjct: 205 HHLV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWE 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G
Sbjct: 261 VLLDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-AL 407
             + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L
Sbjct: 320 -EANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSL 378

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             AD   +    P    P ++       +      G+        ++     D ++V   
Sbjct: 379 GRADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|260583459|ref|ZP_05851207.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
 gi|260158085|gb|EEW93153.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
          Length = 443

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 96/305 (31%), Gaps = 40/305 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG+ GK+S    +  +      +S+ IG  +                        
Sbjct: 105 KSVAITGSHGKTSTTGLLAHVLSAMEPTSYLIGDGTGHGV-------------------- 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G  +  +EA      +H +   K      TN+  DH DY+       +A    F 
Sbjct: 145 ----EGSEYFVLEACE--YKRHFMAY-KPDYAIMTNIDFDHPDYYTDIDDVQSA-FESFG 196

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS 294
             + K   A    DDA   E+     +    +   G  +   +  + +          + 
Sbjct: 197 RQVKKGIIA--CGDDARLHEL-----DVTTPITYYGIAKSNDVVAENIEKDTEGSHFDVY 249

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + GK +  F  P  G   + NAL           +   +  +L+    V  RF       
Sbjct: 250 IYGKFYGKFDIPTFGTHNILNALAIITFYYLNNFNPEELASNLKTFGGVKRRFSEKKIKE 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               +  DYAH  + +   L   R    + +I+ VF                 AL LAD 
Sbjct: 310 --ITVIDDYAHHPSEIRATLDAARQKYPTKKIVAVFQPHTFTRTIALLDEFAKALSLADD 367

Query: 413 AIVTD 417
             + D
Sbjct: 368 VYLCD 372


>gi|62182860|ref|YP_219277.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168232768|ref|ZP_02657826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168234558|ref|ZP_02659616.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194468881|ref|ZP_03074865.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194736211|ref|YP_002117356.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204927013|ref|ZP_03218215.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|224586259|ref|YP_002640058.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130493|gb|AAX68196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194455245|gb|EDX44084.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194711713|gb|ACF90934.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291950|gb|EDY31300.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323678|gb|EDZ08873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205332986|gb|EDZ19750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|224470787|gb|ACN48617.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322717362|gb|EFZ08933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|33860582|ref|NP_892143.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|44888175|sp|Q7V3P8|MURC_PROMP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33633524|emb|CAE18481.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 123/381 (32%), Gaps = 51/381 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L++ G+ GK+S ++F+  + +     S  I  T  I      N     +   +       
Sbjct: 119 LSIAGSHGKTSTSTFLSTLLELCTHDSSSI--TGGIIPIYDSNAHIENTKYLV------- 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                   +    S G  ++         G   N+  DH D++       ++    F++ 
Sbjct: 170 --------TEIDESDGTIKNY----NSDIGIINNIDFDHCDHYSNIDEVLSS----FKKF 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +I  D  ++K              S+       +      I+  + V    E 
Sbjct: 214 ASNCQKLLINYDCKFTKNNF-----TSKNQWSIKESNNIAYSLIPNIINKDKTVGKYYEH 268

Query: 298 KDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             F      P+PG   + N   A   C  +G+    + ++ E L +   RFEF G  ++ 
Sbjct: 269 GKFIDIINIPVPGLHNLSNITAAIAACRMVGVSFKEIKKNTESLKLPKKRFEFRGEINQR 328

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI----------TSGRIIVVFGCGGDRDQGKRPIMGKI 405
             IY DYAH  N ++  +   R              GR+I +F         +       
Sbjct: 329 I-IYDDYAHHPNEIKATIDLARLFIKDKNSSDREEKGRLIAIFQPHRFTRVKQFIHEFVK 387

Query: 406 ALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            L  AD+  VT+     E      D + I   I           +  E      ++  K 
Sbjct: 388 ELSKADVIYVTNIFGAGEKNIDNIDSQLIANLIYKNNKNVTCLKDNYEINEKFFKLTKKN 447

Query: 460 DVLVVAGKG--HETVHIVTNG 478
           D ++  G G  H    I+ N 
Sbjct: 448 DFIINMGAGDCHNLWSILKNK 468


>gi|239621168|ref|ZP_04664199.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515629|gb|EEQ55496.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 505

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 124/428 (28%), Gaps = 65/428 (15%)

Query: 82  FSATIRSNTPILVVDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V  +           + A  + GK     + V G  GK++ +S +  I
Sbjct: 83  YSSAIKPDNPEIVAAHAAGKRIVHRSDILALLMNGK---RAVTVAGAHGKTTTSSMLSHI 139

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G       P+  I  F Q      P    L    +      V        S     
Sbjct: 140 LVNAGAD-----PSYAIGGFIQG-----PDGTTLDGGHAGKGDILVAEADESDGSFA--- 186

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN   DH+D++  +  Y  A               II  DD     V
Sbjct: 187 ----KYHPTIAIITNCEADHLDHYGDEAHYRAA---FVAHAGRATGHVIISIDDPDGLAV 239

Query: 257 MKRAH-NAGCRVLSVGYQGK------------FIHLKKVCAIHNKQQVTISVEG------ 297
           ++    +     ++ G   +            +I  +   A    +Q+T+ +        
Sbjct: 240 LEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGVEQLTLHLPAAVTAGE 299

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A    + +G+  A              RF+  GT  +  
Sbjct: 300 PVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAANAAGTFLGAARRFQVRGTVKQ-V 358

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R      I V+F                 +L  AD  I+
Sbjct: 359 TVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAKSLAKADDVII 418

Query: 416 TDDNPRSED--------PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
           T   P  E         P  I  +   G+             +   A +      +  DV
Sbjct: 419 TGIFPAREKQADFPDISPSTIV-DAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAHHGDV 477

Query: 462 LVVAGKGH 469
           +   G G 
Sbjct: 478 IFTVGAGD 485


>gi|114778007|ref|ZP_01452907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551613|gb|EAU54166.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus
           ferrooxydans PV-1]
          Length = 460

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 124/355 (34%), Gaps = 38/355 (10%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A  L     E  +AVTGT GKS+ ++ + ++ Q +G SS  +G     +           
Sbjct: 100 ADVLMCACAEKTIAVTGTKGKSTTSTIIHRMLQAAGKSSVLVGNIGKPA----------- 148

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   L  L    V     E SSH L                NL  +H+DY+ +  A
Sbjct: 149 -----FDELEALEQADVIVC--ELSSHQLTTVTRS---PNVAVLLNLFPEHLDYYSSLDA 198

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y+ AK  +F    P +   ++ AD    +E+   A     +     +      L    A 
Sbjct: 199 YYQAKTAVFRYQGPDD-YLVLNADSPECREMTTTALAKKLQ-----FSHDDCQLD---AW 249

Query: 286 HNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHV 341
            ++  + I  +G D +       L G F +YN + A         ++ A++ + L+    
Sbjct: 250 FDESSIHIQTDGGDIEVPHACCELLGAFNMYNVMAAILATSRMAVVNRAVIEQALKGFTG 309

Query: 342 VPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           +P R E+V    +G     D  + T ++    L        G +I+         +    
Sbjct: 310 LPDRMEYVSV-VQGVTFINDSISTTPDTTCAALSAFEASV-GTLILGGQARPVATERYER 367

Query: 401 IMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           +   I L      I    N P   D  +             E  + + A+ TA++
Sbjct: 368 LAAMIRLYGVQHLIFLPQNGPAMRDILQRYFNNTGFTVCMHEVNDMVAAVETALQ 422


>gi|84496504|ref|ZP_00995358.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
 gi|84383272|gb|EAP99153.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
          Length = 737

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 137/442 (30%), Gaps = 52/442 (11%)

Query: 69  EAIVVSSAYSLQDFSATIRSNT-PILVV----DNTRKFLSLFASRLYGKHPENILA---- 119
             +VVS  +  +  +  +  +  P+L       +     ++         P  I+     
Sbjct: 105 SVVVVSFVWRRRGPAQALGESVAPVLAAWLEGRDVVDEQAVLVREAPDGPPARIVTPRIP 164

Query: 120 ---VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
              +TGT+GK+S    +  I   SG  +     +ST         +        A A   
Sbjct: 165 VASITGTNGKTSTTRLLAHIAMTSGKHTAW---SSTDGVVDHGTMIEPGDFSGPAGARGV 221

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ--TQQAYFNAKMRLF 234
           L + GV    +E +  G+    L          TN+  DH+      T       K  + 
Sbjct: 222 LGAPGVEIGILETARGGMLLKGLGVSHNDVSVVTNVTADHLGLQGVDTVDQLAEVKA-II 280

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV------CAIHNK 288
                 +   ++  DD     V      +  +            +++             
Sbjct: 281 TRATRPDGWTVLNGDDP---RVWAMRTGSPAKPWVFSLDANSPAIREALGAGGRAITVLD 337

Query: 289 QQVTISVEGK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +VT+  +           D            V N L A    +A+GID A V+E L   
Sbjct: 338 DRVTVLTDSGVPDRLVSVVDVPMTISGLSRHNVTNVLAATAAALALGIDRAAVIEGLRTF 397

Query: 340 HV----VPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV-FGC 390
                  PGR          G    + VD AH    LE ++     +   G  I +  G 
Sbjct: 398 RPDAALNPGRMNTYSAPGGLGGTCTVVVDLAHNEAGLEALMDVAEGLRQPGSRIHLGLGA 457

Query: 391 GGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEKIRAEI-----IHGIPGFIEKG 443
           GGDR       +G+IA   AD  +        R    E + A +       G+       
Sbjct: 458 GGDRTDEILENLGEIAGHRADHIVAAHKAHYLRGRSMEDLEAHLRIGLQRAGVADIDSYE 517

Query: 444 NRIEAIRTAIEMLNKQDVLVVA 465
             +  +R  +E+ +  DV+ + 
Sbjct: 518 TELTGLRALVEVAHDGDVVAIM 539


>gi|330828377|ref|YP_004391329.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas veronii B565]
 gi|328803513|gb|AEB48712.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas veronii B565]
          Length = 456

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 103/358 (28%), Gaps = 24/358 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  + + + L    +     +      +     +P ++ +
Sbjct: 101 QDRWVLAVAGTHGKTTTASMLAWVLEYAKLEPGFL--IGGVPGNFPVSARLGSAPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +                               NL  DH D      A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYH------------PRTLVMNNLEFDHADIFPDLAAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +          ADD  +     R       V  VG         K+    +  +V 
Sbjct: 207 LMRTVPSNGRVLFPQADDNLT---AVRKMGCWSEVELVGQDDAKWQAVKLADDGSAFEVW 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  +   GE  V N L+A       G+     +  L +      R E  G  
Sbjct: 264 LDGE-KQGEVHWECIGEHNVNNGLMAIAAARHAGVMVEHGIAALCQFKSPKRRMELKGEV 322

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLA 410
           + G  +Y D+AH   ++E  L  +R       I+            G          D A
Sbjct: 323 A-GISVYDDFAHHPTAIETTLGGLRAKVGCSRILAVLEPRSNTMKLGVHKEELAGCFDGA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D            D  ++ A +      F    +    I   +      D +++   G
Sbjct: 382 DEVFFFQPPNIGWDLGEVTAHMTRPAKVF---NDLETLINRLVAESRDGDHILIMSNG 436


>gi|126663236|ref|ZP_01734234.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteria bacterium
           BAL38]
 gi|126624894|gb|EAZ95584.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteria bacterium
           BAL38]
          Length = 448

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 136/418 (32%), Gaps = 51/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++V+ A  +                 N +K   +        +     AV GT GK++ +
Sbjct: 74  VIVTPAVPVTHSEWNYFVERNY----NVKKRAEVLGIITKDTYC---FAVAGTHGKTTTS 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +   SG     +  T+ +    ++               S L   G T   VEA 
Sbjct: 127 SILGHVLFESG-----VDVTAFLGGIVENYN-------------SNLIGSGKTVTVVEAD 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
               D+  L  +       T++  DH+D +    +   +    F E   K S   +Y   
Sbjct: 169 EF--DRSFL-HLHPNVSCVTSMDADHLDIYGDAASIEES----FREFAAKTSSDNLYV-- 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFD-FLFPLPG 308
                             ++G         +   I N      +    +  +   F LPG
Sbjct: 220 ---------IKGLPLEGYTIGVNNDANFSAQNIRIENGFYVFDVKTPSELIENVQFGLPG 270

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL+A  +  + G+ +  ++  L+    V  RF F            DYAH    
Sbjct: 271 HHNLTNALLALAMAKSYGVSNENIIAALKSFKGVRRRFSFQ-IREENIVYIDDYAHHPTE 329

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  + + +R    + +II  F                 +L   D  ++ +  P  E P +
Sbjct: 330 INAVHQAVRELYPNKKIIAAFQPHLFSRTKDFVDGFAESLSQFDEVLLLEIYPARELPME 389

Query: 428 IRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
                 +++ I    +K    E +  A +  +  DV +  G G     +V N +K + 
Sbjct: 390 GVNSTWLLNKINNPNKKLVSKEELLVAFKNSDA-DVFITIGAGD-IGELVKNIKKTLH 445


>gi|150009085|ref|YP_001303828.1| UDP-N-acetylmuramate--L-alanine ligase [Parabacteroides distasonis
           ATCC 8503]
 gi|256841645|ref|ZP_05547151.1| UDP-N-acetylmuramate-alanine ligase [Parabacteroides sp. D13]
 gi|262383985|ref|ZP_06077121.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_33B]
 gi|298377160|ref|ZP_06987114.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_19]
 gi|301310863|ref|ZP_07216792.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 20_3]
 gi|189029015|sp|A6LEU2|MURC_PARD8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149937509|gb|ABR44206.1| UDP-N-acetylmuramate--alanine ligase [Parabacteroides distasonis
           ATCC 8503]
 gi|256736539|gb|EEU49867.1| UDP-N-acetylmuramate-alanine ligase [Parabacteroides sp. D13]
 gi|262294883|gb|EEY82815.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_33B]
 gi|298266144|gb|EFI07803.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_19]
 gi|300830926|gb|EFK61567.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 20_3]
          Length = 462

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 123/365 (33%), Gaps = 41/365 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ +S +  + ++S      +   + +    ++              
Sbjct: 111 SSRGLCVAGTHGKTTTSSMLAHLLKQS-----PVDCNAFLGGILKNYES----------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + + S       +EA       H L          T+   DH+D + T +AY  +    
Sbjct: 155 -NLMLSDTSDFTVIEADEFDRSFHWL---TPYMAVITSADPDHLDIYGTAEAYRES-FEK 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+  +   +I      +  + +        V  +       + + +        +T 
Sbjct: 210 FTSLIRPDGCLLIKKGINVTPRLQEGVKKYTYSVTEI----ADFYAENIRI--CDGNITF 263

Query: 294 SVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              G +    D    +P +  + N + A  +    G+    + + +        RF+F  
Sbjct: 264 DFVGPEIRIPDVELGVPVKVNIENGVAAMAIAWLNGVKPEDLKKGMATFAGPRRRFDF-H 322

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDL 409
             +    +  DYAH    L   + +++ + +GR +  +F                 +L L
Sbjct: 323 LKTDQVVLIDDYAHHPAELRQSILSVKELYAGRKVTGIFQPHLYTRTRDFAGDFAASLSL 382

Query: 410 ADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D  I+ D  P  E+P      +I  + +      + K    E +   +    K +V+++
Sbjct: 383 LDELILLDIYPAREEPIPGVSSRIIFDKVTIPSKTLCK---KEELLDVVA-AGKYEVVLM 438

Query: 465 AGKGH 469
            G G+
Sbjct: 439 VGAGN 443


>gi|148257421|ref|YP_001242006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. BTAi1]
 gi|146409594|gb|ABQ38100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium sp.
           BTAi1]
          Length = 466

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 125/350 (35%), Gaps = 46/350 (13%)

Query: 55  DGHLFIPQAIAQG--------------AEAIV---VSSAYSLQDFSATIRSNTPILVVDN 97
           DG   + +A   G              A  ++   V   + +  +S        I V+ +
Sbjct: 40  DGAERLAEAAKAGFVTADLRTVSWSDFAALVLAPGVPLTHPVPHWSVLKAREAGIEVIGD 99

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
              F      R         +A+TGT+GKS+  + +  + Q +G  +   G   T     
Sbjct: 100 IELFCRE---RRRHAPDAPFVAITGTNGKSTTTALIAHLMQTAGYDTQLGGNIGT----- 151

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                           LS    +      +E SS+ +D      +    G   N+  DHI
Sbjct: 152 --------------AILSLEPPRMGRVHVIEMSSYQIDL--TPSLDPTVGILLNVSEDHI 195

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           D H T + Y   K RL   + P E  AII  DD +S+ +  R   AG RV+ V  +    
Sbjct: 196 DRHGTIENYAAVKERLVAGVKP-EGTAIIGVDDGFSRAIADRLDQAGKRVVRVSVKNPLA 254

Query: 278 HLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               V      +  +    E      +  L G+    NA  AA   +AIG+   ++ + L
Sbjct: 255 DGLYVEHETILRSASGARSEVARLGGIGSLRGQHNAQNAACAAAATLAIGVKQDVLQQGL 314

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                +  R E VG   RG  ++V+ +  +N+ +     + +      I 
Sbjct: 315 RSFPGLVHRMEQVG--RRGHVLFVNDSKGTNA-DATAHALSSFADIFWIA 361


>gi|171463032|ref|YP_001797145.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192570|gb|ACB43531.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 468

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 133/413 (32%), Gaps = 51/413 (12%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS    L    A +    P +      ++L      LYGKH   +LAV GT GK++ ++
Sbjct: 73  VVSRGNPL--MEAILNQGLPYISGP---QWLGE--QVLYGKH---VLAVAGTHGKTTTSA 122

Query: 132 FVQQICQRSGLSSFQ----IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  I + +G         +    T+S++  +++           A     S+ V +   
Sbjct: 123 MLTWILEFNGYKPGYLIGGVPLNFTVSAYLGESKYFVIEADEYDTAFFDKRSKFVHY--- 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                          +       NL  DH D      A    +       +P +   ++ 
Sbjct: 180 ---------------RPRTALLNNLEFDHADIFADLAAI-ETQFHHLVRTVPGDGLLVVN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            ++     V+ R   A   V   G +      +            +   GK+   +    
Sbjct: 224 GEEPALASVITR--GAWAPVERFGQES---VNEWSLISQEADGFIVRKSGKEVATVKWAP 278

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G     NAL A      IGI  A     L +   V  R E +G  +    IY D+
Sbjct: 279 DSGVMGRHNQLNALAAIASANHIGISPADSAFALVEFKNVKRRLETIGV-ANDVTIYDDF 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNP 420
           AH   ++   +  +R       I+              +  ++  +L+ AD       N 
Sbjct: 338 AHHPTAITTTVDGLRRRVGNARILAVLEPRSNTMKLGVMKAQLPSSLEAADKVFAYSANS 397

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
             E      AE++  +           + +E +  A+ +     D ++V   G
Sbjct: 398 GKESLGWDLAEVLSPLNQQEQWKAHAFDDLELLVKAVALEAKPGDHILVMSNG 450


>gi|223043731|ref|ZP_03613774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
 gi|222442828|gb|EEE48930.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
          Length = 449

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 159/435 (36%), Gaps = 63/435 (14%)

Query: 48  AIVGNKE---DGHLFIPQAIAQ-----GAEAIVVSSAYSLQDFSATI--RSNTPI---LV 94
           A +G      DG      A A+     G E I      SL D +  I      P    ++
Sbjct: 29  AKLGANVKVNDGKDLSQDAHAKDLESMGIEVISGEHPLSLLDNNPIIVKNPGIPYTVSII 88

Query: 95  VDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +  R+ L +      S L  + P  I+ VTGT+GK++V S +  + ++S L+    G  
Sbjct: 89  DEAVRRGLKILTEVELSYLISEAP--IIGVTGTNGKTTVTSLIGDMFKKSVLTGRLSGNI 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             ++S          +  YL   LS     G+                    K      T
Sbjct: 147 GYVASK---VAQEVKADEYLITELSSFQLLGIDEY-----------------KPHIAIIT 186

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+DYH++ + Y NAK ++++     +     Y    Y +  +    N   + L  
Sbjct: 187 NIYSAHLDYHESLENYQNAKKQIYKNQTEDD-----YLICNYHQRHLIETENLKSKTLYF 241

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDS 329
             Q      ++V  I+ K    +    +  +     LPGE  + N L A    I  G+  
Sbjct: 242 STQ------QEVNGIYIKDGFIVFNGVRIINVKDLVLPGEHNLENILAAVLAAILAGVPV 295

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +++ L     +  R +++GT+      Y + +  +N+L      + + T   I +   
Sbjct: 296 KAIVDSLTTFSGIDHRLQYIGTHRTNK--YYNDSKATNTLATQF-ALNSFTQPIIWLC-- 350

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G DR      ++  +  +   + IV       E  EK            I+  N  +A+
Sbjct: 351 GGLDRGNDFDELIPYM--NNVRVMIV-----FGETQEKFAKLGNSQGKYVIKATNVEDAV 403

Query: 450 RTAIEMLNKQDVLVV 464
               +++   DV+++
Sbjct: 404 DKIQDIIEPNDVVLL 418


>gi|312869526|ref|ZP_07729681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           oris PB013-T2-3]
 gi|311094973|gb|EFQ53262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           oris PB013-T2-3]
          Length = 458

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 141/398 (35%), Gaps = 50/398 (12%)

Query: 70  AIVVSSAYSLQDFSAT---IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A+VV +     D       +   TPI+    T   L       +     ++++VTG++GK
Sbjct: 74  AVVVKNPGIPYDNPLVAKFVEKGTPII----TEAELG------WEIFAGHLVSVTGSNGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  +  Q +  +S  S+  +     I                L   LS     G     
Sbjct: 124 TTTTTLTQLMLAKS--STHNVKYAGNIGVSFSRVAEELGPEDTLVTELSSFQLLGA---- 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          I       TN+  +H+DYH+T++ Y NAK+ +     P +   + 
Sbjct: 178 -------------PTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTPDDFLIMN 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +  D + +E+ +R           G      + +        +++  + +         L
Sbjct: 225 WDRDEW-QEIARRTRATVVPFSRQGKSHAGAYEEDGAIYWRGERIMAARD-------IRL 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V NAL A       G+ +  ++  L     V  R ++V  + +G R Y D    S
Sbjct: 277 IGPQNVGNALAAIAAAKLSGVSNEDIVSVLTTFSGVRHRLQYV-LDYQGRRFYNDSK--S 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +E     ++       +++   G DR      ++      +  I +        +D  
Sbjct: 334 TDIEATEVALQGFDQP--VILLAGGLDRGYTFERLVPYFKEHVKGIIVFGQ----CKDKM 387

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K  AE   GIP  IE  N + A+  A ++    DV+++
Sbjct: 388 KDAAE-QAGIPMIIESENAVTAVPEAWKISEPGDVILL 424


>gi|329572871|gb|EGG54496.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1467]
          Length = 379

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 97/305 (31%), Gaps = 40/305 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG   T       +     +  Y    
Sbjct: 39  PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG-DGTGHGEPDADFFAFEACEYRRHF 97

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+Y                                 TN+  DH DY+++ +  F+A  + 
Sbjct: 98  LAY--------------------------SPDYAIMTNIDFDHPDYYKSIEDVFSA-FQT 130

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
               + K   A  Y DD Y +++      +   V   G  +   I  + +          
Sbjct: 131 MAHQVKKGIFA--YGDDKYLRQL-----ESEVPVYYYGVSEEDDIQARNIQRTTEGSSFD 183

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +      F+ P  G   + NAL    +     +D   V E +     V  RF     
Sbjct: 184 VYHKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKV 243

Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +     I  DYAH    ++  +    +      II VF                 ALDLA
Sbjct: 244 SDM--IIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLA 301

Query: 411 DIAIV 415
           D   +
Sbjct: 302 DEVFL 306


>gi|49474458|ref|YP_032500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           quintana str. Toulouse]
 gi|62900524|sp|Q6G122|MURD_BARQU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49239962|emb|CAF26367.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           quintana str. Toulouse]
          Length = 466

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 126/352 (35%), Gaps = 61/352 (17%)

Query: 91  PILVVDNTRKF---------LSLFASRLYGKHPE------NILAVTGTSGKSSVASFVQQ 135
           P  VVD  R+          L + A   + +H          +A+TGT+GKS+  + +  
Sbjct: 82  PHWVVDKARQADIEIVGDIELFVRARNHFLQHSGFRDQDVPFIAITGTNGKSTTTALLAH 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + ++ G      G   T                     L+           +E SS  ++
Sbjct: 142 LLEQMGYDVQMGGNIGT-------------------AILTLKPFVKKRIYVIECSSFQIE 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 ++   G   NL  DHID H +  AY  AK RL        S A I  D+A  + 
Sbjct: 183 L--TPSLQPTIGLLLNLTSDHIDRHGSFAAYVQAKRRLVTG----ASYAFISVDNAVCQA 236

Query: 256 VMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           + ++  + G +V +V  +     G +    K+ ++   Q+  ++    D   +  L G  
Sbjct: 237 LYQQLLDEGHQVGAVSKEHFVENGFYADRTKLFSVCQGQRHMLA----DLADMTALRGSH 292

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL+      A+ I    + ++L     +  R + V     G  ++++ +  +N+ E
Sbjct: 293 NAQNALMVLATLQALKISDPHIEKYLASYKGLAHRMQQV--RKMGPVLFINDSKATNA-E 349

Query: 371 MILKNIRTITSGRIIVVFGC---------GGDRDQGKRPIMGKIALDLADIA 413
                + T      IV             G      K  ++G+ A + A + 
Sbjct: 350 ASAPALSTFNDIFWIVGGQAKEGGIEALRGFFHKIRKAYLIGEAAQEFAGVI 401


>gi|225028113|ref|ZP_03717305.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
 gi|224954583|gb|EEG35792.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
          Length = 453

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 108/299 (36%), Gaps = 35/299 (11%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +    +  N+  DH+D H T + Y + K  +  +   KE   ++  DD  ++E+ K+A  
Sbjct: 177 QPEVSAVLNVTPDHLDRHGTMEVYADTKFSI-SKKQNKEQVIVLNYDDPITREMAKKATA 235

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVA 318
                  +    + I L+            I  +GK+          L G     N L A
Sbjct: 236 RPVMFSRLEELDEGIVLR-------GDTFIIKEDGKELPVCTTSEIKLLGSHNHENILAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMILKNI 376
            G+   +G+    + + + K   V  R E+V T        VDY + S   + +  +K I
Sbjct: 289 IGITYYMGVPVEQIRDAVMKFTAVEHRIEYVDTVDG-----VDYYNDSKGTNPDAAIKGI 343

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             +T     ++ G G D+       +      +  + ++        D  K      HG 
Sbjct: 344 SAMTKPT--ILLGGGYDKKSTYDEWIDAFHGKVRYLIVMGATAQAIADTAK-----NHGF 396

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV----AGKGHETVHIVTNGEKKMSVDCDIIRE 491
              I      EA+  A E     D +++    A  G     +  N E +  V  +I+R+
Sbjct: 397 HNVIFADTFEEAMNIAKEKARPGDAVLLSPACASWG-----MFKNYEVRGKVFKEIVRK 450


>gi|46908272|ref|YP_014661.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47094495|ref|ZP_00232169.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. 4b H7858]
 gi|226224642|ref|YP_002758749.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Listeria
           monocytogenes Clip81459]
 gi|254826208|ref|ZP_05231209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J1-194]
 gi|254854027|ref|ZP_05243375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL R2-503]
 gi|254933464|ref|ZP_05266823.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes HPB2262]
 gi|255520494|ref|ZP_05387731.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J1-175]
 gi|300765471|ref|ZP_07075452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL N1-017]
 gi|60390485|sp|Q71XX7|MURD_LISMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46881543|gb|AAT04838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017132|gb|EAL07991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. 4b H7858]
 gi|225877104|emb|CAS05816.1| Putative UDP-N-acetylmuramoylalanine D-glutamate ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607419|gb|EEW20027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL R2-503]
 gi|293585026|gb|EFF97058.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes HPB2262]
 gi|293595449|gb|EFG03210.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J1-194]
 gi|300513782|gb|EFK40848.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL N1-017]
 gi|328466096|gb|EGF37266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 1816]
 gi|328472684|gb|EGF43542.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 220]
          Length = 455

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 105/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ADD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGARD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++       A I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKALIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGID--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|260767159|ref|ZP_05876102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           CIP 102972]
 gi|260617833|gb|EEX43009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
           CIP 102972]
          Length = 439

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 138/404 (34%), Gaps = 68/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L            I VV +         +    K    ++A+TG++GKS
Sbjct: 69  ADLIVANPGIALATPEIQQALAANIPVVGDI-----ELFAWHVDKP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+++   G     +                      L +Q      +
Sbjct: 121 TVTDLTGVMANAAGIATAVGGNIGVPA--------------------LDLLAQPAELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L A +F NL  DH+D +     Y  AK+R+FE        A++ 
Sbjct: 161 ELSSFQLE--TTSSLALKAAAFLNLSEDHMDRYDGMAGYRQAKLRIFEH----AQTAVVN 214

Query: 248 AD------DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           AD      DAYS   ++          +  + GK + L     +     ++         
Sbjct: 215 ADDTQTYPDAYSGRTVRFGLEQPAEFTTAQHDGKEVLLANGEVVLPTSDLS--------- 265

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   V N L    L  A G++    L  L+    +  R + V  N +G +   D
Sbjct: 266 ----LVGRHNVANVLTVLALLDAAGVNYTNALPALKSYTGLTHRCQVVADN-QGIKWVND 320

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+  +   L  +  +T    + +   G  +     P+   +      +     D   
Sbjct: 321 SKATN--VASTLAALSGLTLNGTLYLLVGGVGKGADFTPLKPVLETLPLMLCCFGRD--- 375

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
                    +    +    ++ + +EAI  +I   L   D++++
Sbjct: 376 --------GDQFMPLHASAQRFDTMEAIIASIRPQLKAGDMVLL 411


>gi|21244161|ref|NP_643743.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109793|gb|AAM38279.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 452

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 147/415 (35%), Gaps = 34/415 (8%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 49  ALAQGYAPSNISLDATEVVVGNALSRRNPAVEAVLDAGRRYTSGAQWLAEQVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A+D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGREFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G++       ++ A        +    + 
Sbjct: 214 ARGRLIVNGEDAHLAEVL--AMGCWTPVERFGFEASLDWSARLIAADGSAFAVLHRGVEI 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A V+  L +   V  R E +G N+R   +Y
Sbjct: 272 GQVQWPLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVKRRLEVIG-NARDITVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       +VV                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRAKVGAARVVVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 389

Query: 418 DNPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              R E   D   I A++  G    ++  +   A+   + E+    D +V    G
Sbjct: 390 --HRPELAWDAAPIIAQV-RGEARVVQDVD---ALLHTLGEIARPGDHVVFMSNG 438


>gi|255015706|ref|ZP_05287832.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides sp. 2_1_7]
          Length = 462

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 123/365 (33%), Gaps = 41/365 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ +S +  + ++S      +   + +    ++              
Sbjct: 111 SSRGLCVAGTHGKTTTSSMLAHLLKQS-----PVDCNAFLGGILKNYES----------- 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + + S       +EA       H L          T+   DH+D + T +AY  +    
Sbjct: 155 -NLMLSDTSDFTVIEADEFDRSFHWL---TPYMAVITSADPDHLDIYGTAEAYRES-FEK 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+  +   +I      +  + +        V  +       + + +        +T 
Sbjct: 210 FTSLIRPDGCLLIKKGINVTPRLQEGVKEYTYSVTEI----ADFYAENIRI--CDGNITF 263

Query: 294 SVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              G +    D    +P +  + N + A  +    G+    + + +        RF+F  
Sbjct: 264 DFVGPEIRIPDVELGVPVKVNIENGVAAMAIAWLNGVKPEDLKKGIATFAGPRRRFDF-H 322

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDL 409
             +    +  DYAH    L   + +++ + +GR +  +F                 +L L
Sbjct: 323 LKTDQVVLIDDYAHHPAELRQSILSVKELYAGRKVTGIFQPHLYTRTRDFAGDFAASLSL 382

Query: 410 ADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D  I+ D  P  E+P      +I  + +      + K    E +   +    K +V+++
Sbjct: 383 LDELILLDIYPAREEPIPGVSSRIIFDKVTIPSKTLCK---KEELLDVVA-AGKYEVVLM 438

Query: 465 AGKGH 469
            G G+
Sbjct: 439 VGAGN 443


>gi|125625078|ref|YP_001033561.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|166224698|sp|A2RNJ0|MURC_LACLM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|124493886|emb|CAL98880.1| UDP-N-acetyl muramate-alanine ligase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071883|gb|ADJ61283.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 443

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 100/319 (31%), Gaps = 42/319 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG  +   +   +  +               
Sbjct: 106 IGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDGTGRGNAGSEYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY +  +   +A  + +   
Sbjct: 155 ----------EYERHFMPYH------PEYTIMTNIDFDHPDYFEGIEDVTSA-FQDYANN 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           + K   A  Y +D   +++  +A      +   G++       + +              
Sbjct: 198 IKKGIFA--YGEDVNLRKLSAKAP-----IYYYGFEANDDYRAENLIRSTRGSSFDAYFR 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F+ P  G+  V NAL    +C  +G+D   V +HL     V  RF         
Sbjct: 251 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTDVADHLLTFRGVKRRFTEKKVGE-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +E  L   R       I+ VF                  LD AD   
Sbjct: 309 TVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLDHADTVY 368

Query: 415 VTDDN--PRSEDPEKIRAE 431
           +       R  D  +I A+
Sbjct: 369 LAQIYGSAREVDHHEITAQ 387


>gi|319937184|ref|ZP_08011591.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. 29_1]
 gi|319807550|gb|EFW04143.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. 29_1]
          Length = 436

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 101/268 (37%), Gaps = 19/268 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+  DH+DY Q+ + Y  +    F   +      +++ DD +   +     N
Sbjct: 161 QPTYAVINNIEMDHVDYFQSIEQYVQS-FEQFANQVKD--TVVVWGDDPHLPHL-----N 212

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
              RVL  G   K  +  K +   ++     + + G  F  F  P  G   +Y++L    
Sbjct: 213 YTKRVLKFGISDKNDVIAKNIINNNHGLYFDVYIHGDLFGHFALPFYGMHMLYDSLAVIT 272

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L     +D+  + + L     V  R+      +       DYAH   +++ +++  R+  
Sbjct: 273 LGYLENMDADYIQKRLSTFDGVKRRYTVQEVGNN--VYVDDYAHHPTAIKYVIEATRSRY 330

Query: 381 SGRIIV-VFGCGGDRDQGKRPIMGKIALDLAD--IAIVTDDNPRSEDPEKI-RAEIIHGI 436
            G+ IV +F         +       +++LAD    +   +N + E    I   EI   +
Sbjct: 331 PGKEIVAIFQPDRFSRGLRFAKEFAESMNLADYPFLVHFPENAKKEAGIDIDIHEIGQYL 390

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P  I      +A++    +    DV+ +
Sbjct: 391 PRAIVIHEDEDAVKL---LAEHDDVVFL 415


>gi|281413643|ref|ZP_06245385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 475

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 143/420 (34%), Gaps = 55/420 (13%)

Query: 67  GAEA--IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           GA A  +V S  +        A   +  PI    +      L      G+   + + +TG
Sbjct: 47  GAAADLVVTSPGWRPDQPLLMAAHAAGRPIW--SDVELAWRL--RERAGRKTADWVCLTG 102

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GK++  + V+ I +  G  +   G   T                      +    QG 
Sbjct: 103 TNGKTTTVTMVEAILRADGRRAVACGNVGT------------------PVLDAIRDPQGF 144

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +++E SS  L  H   G+   + +  NL  DH+D+H + + Y  AK +++        
Sbjct: 145 DVLALELSSFQL--HWTHGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGKVYAN---TRV 199

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D  ++ +++RA +      ++G+      L  +  +         ++ +  + 
Sbjct: 200 ACVFNEQDPLTRTLVERA-DVQEGCRAIGFTTDTPGLSDIGVVDGILVDRAFLDNRRHEA 258

Query: 303 LF--------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +         P+     + NA  AA L  A+G+  A V E L        R + V T+  
Sbjct: 259 IALAERADLGPVAPRHTMANAAAAAALTRAVGVSPAAVAEGLRSYDRGEHRIQLVATSRD 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +    A   ++ +  L    ++           G  +      ++   A  L  + +
Sbjct: 319 IMWVNDSKATNPHAADASLAAFSSVVW------LAGGLPKGVTYHELVAAHAHRLRAVVL 372

Query: 415 VTDDNPRSEDPEKIRA-EIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVA 465
           +  D           A ++    P     G           EA+R A  +    D +++A
Sbjct: 373 LGRDTSALRAALAAHAPDVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDTVLMA 432


>gi|182416775|ref|ZP_02948170.1| folylpolyglutamate synthase [Clostridium butyricum 5521]
 gi|237668111|ref|ZP_04528095.1| tetrahydrofolate synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379355|gb|EDT76852.1| folylpolyglutamate synthase [Clostridium butyricum 5521]
 gi|237656459|gb|EEP54015.1| tetrahydrofolate synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 435

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 143/404 (35%), Gaps = 43/404 (10%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152
           + T + L L  S    ++   ++ + GT+GK S  S + ++    G              
Sbjct: 25  ERTHRLLELLGS---PQNKLKLIHIAGTNGKGSTTSMISKVLIGMGFKVGMYTSPYLEVF 81

Query: 153 -----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----------- 196
                I+           +   +  A+S +  +G  H +       L             
Sbjct: 82  EERIQINGVNIPKDKLIDNLENVKYAVSKVIEEGYEHPTEFEIITALMFLYFYNEKIDYG 141

Query: 197 -------HRLDG---IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAI 245
                   RLD    I       T++  DHI+    T +     K  + +E +P     +
Sbjct: 142 VIEVGLGGRLDSTNVIIPKVSVITSISMDHINILGNTIEEIAKEKSGIIKEDVP---VIL 198

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                     ++K AHN   +   V  +    +LK +   +  Q V ++     ++   P
Sbjct: 199 YPQKKEAEDVILKAAHNNNSKAYYV--KTDDGNLKGIDYDNITQNVQVNGLNGIYNVDLP 256

Query: 306 LPGEFQVYNALVAA-GLCIAIGIDSALVLEHL--EKLHVVPGRFEFVGTNSRGGRIYVDY 362
           L GE Q+ N  VA   + +   ++     + +  E L  V         N +   I +D 
Sbjct: 257 LLGEHQILNLCVAIKAVEVLCQVEKIQYNKEIIEESLKDVKWIGRLETLNRK-PLIVIDG 315

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH  + + ++  NIR       + +   G   D+    ++ +I      I  +T  + R+
Sbjct: 316 AHNIDGIRVLKNNIRKYFKYNKMYLLL-GILADKQVNEMIKEITPMAEKIFALTPHSDRA 374

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E  E ++ EI           +  EAI  A+++    D+++V+G
Sbjct: 375 ELSEDLKREIEKVNQNVEAFDDYNEAINEALKVAEDDDLILVSG 418


>gi|114045894|ref|YP_736444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-7]
 gi|113887336|gb|ABI41387.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-7]
          Length = 439

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 127/379 (33%), Gaps = 60/379 (15%)

Query: 30  INEVSSDSRHIQAG-----WIF--VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           I  +  DSR    G       F  V ++    D   ++ QA       I++S   ++   
Sbjct: 28  ITPLVMDSRRQPPGADTLASAFPEVQLIAGGFDCR-YLVQAKQ-----IIISPGIAIDTP 81

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 +  I V+ +   F    A R        +L +TG++GKS+V + V ++ + +G+
Sbjct: 82  EVRAALDMGIEVIGDVELFAREIADR-----KPCVLGITGSNGKSTVTTLVGEMLREAGM 136

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G     +                      L ++      +E SS  L+      +
Sbjct: 137 AVAVGGNIGIPA--------------------LDLLTENADIFVLELSSFQLE--TTHSL 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             +A +  N+  DH+D +    AY  AK+RL+ +        I   DDA +        N
Sbjct: 175 NCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ----SRSIIFNRDDALTIPTEPMNQN 230

Query: 263 AGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 S G    +G    +      H   ++    E         L G     N L A 
Sbjct: 231 ------SFGLAPPEGDEWGICDSKIYHGHSEIMPITE-------VSLIGSHNHANLLAAM 277

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A+G+D  ++ +       +  R E VG  +    +    A    +    L  +   
Sbjct: 278 ALVYAVGVDKQVMAKVARTFTGLSHRCEVVGVKAGVTYVNDSKATNVGATVAALDGLSDH 337

Query: 380 TSGRIIVVFGCGGDRDQGK 398
               I++  G G   D   
Sbjct: 338 LGDIILIAGGDGKGADFSP 356


>gi|302876095|ref|YP_003844728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
 gi|307686818|ref|ZP_07629264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulovorans 743B]
 gi|302578952|gb|ADL52964.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
          Length = 448

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 106/279 (37%), Gaps = 24/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E S H L    +   K      TN+   H+D+H +   Y + K R+F     K   AI+
Sbjct: 163 MEVSDHQLCN--VIEFKTNISVLTNISEAHLDFHGSYDIYKSMKKRIFNHHT-KSDMAIL 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD    ++ K   +   +  S     K         I+      IS++         +
Sbjct: 220 NLDDKEVLDLTKDIKSTK-KYFSFSSSNKLGCTITDGYIYYNNDKIISLD------EVKI 272

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT- 365
            G+    N + A  +   +GI++ ++ + L+    V  R E+V T +        Y  + 
Sbjct: 273 KGKHNYENVMAAIAVVKELGIENQVITDLLKTFGGVEHRIEYVKTINN----IDFYNDSK 328

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           + +++     + + T   I+++   G DR      +  +   ++  I    +   R ED 
Sbjct: 329 ATNIKSTQTALSSFTKPTILLL--GGLDRGHSFDSLK-EYLSNVKLIVAFGEAKIRIEDF 385

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            K       GIP  +   +  EA   A    ++ DV+++
Sbjct: 386 AKKC-----GIPCNL-VNSLGEATEIAYNSASEGDVVLL 418


>gi|29840620|ref|NP_829726.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
 gi|41017332|sp|Q821S4|MUDD_CHLCV RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|29834970|gb|AAP05604.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
          Length = 811

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 132/401 (32%), Gaps = 52/401 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ D + I  G  +  + G+KE    ++P    +G        A    ++   +R   
Sbjct: 38  QGITID-KLIAKGAAY--LPGHKE---SYVP---EEGTIIYGSGIAKDNVEYKEALRKQL 88

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P++        L            +  + V+G+ GK++V+S +  I Q +        P+
Sbjct: 89  PLVHRAELLALLM---------QEQTSILVSGSHGKTTVSSLITAIFQTAKKD-----PS 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             I                   A +  S   + H                         T
Sbjct: 135 YAIGGLNSQYLNGYSGSSEYFIAEADESDGSLKHYF-----------------PKVAVVT 177

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL  +H+   +  +      +  F   +   +      D    +E+  R        +S 
Sbjct: 178 NLDNEHLSNFEGSKEKLAQTIEEFTRKVDDPNLCFYNGD---CQELKGRISG-----ISY 229

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID 328
           G+  +  +++        +   ++S  GKD+ D    L G+  V NA  A G+ +  GID
Sbjct: 230 GFSQECALYIYSHRQEGWRSVFSLSFLGKDYLDIDLNLIGKHNVANAAAAIGVALTFGID 289

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVV 387
              + E L+    V  R E   T+ +      DYAH  + +   L+ +R      RII +
Sbjct: 290 EESIREALKSFSGVQRRMERKNTSEK-FLFLEDYAHHPSEISCTLRALRDAVGLRRIIAI 348

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
                             A   AD  I+TD     E P  +
Sbjct: 349 CQPHRFSRLLYCLEEFFNAFQDADEVILTDVYSAGEMPLDL 389


>gi|260462088|ref|ZP_05810332.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031948|gb|EEW33215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           opportunistum WSM2075]
          Length = 466

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 146/449 (32%), Gaps = 55/449 (12%)

Query: 60  IPQAIAQGA-----EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           I  A  +GA      A V+S    L      ++  +     + V+ +   F      R  
Sbjct: 53  IETADLRGADWAKFSAFVLSPGVPLTHPKPHWTVELARGAGVEVIGDIELFCRE---RTL 109

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  + +TGT+GKS+  +    I + +G  +   G    I           P     
Sbjct: 110 SAPAAPFIGITGTNGKSTTTALTAHILKSAGRDTQMGG---NIGRAVMTLDPPKPD---- 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                        H  VE SS+ +D      I   AG   NL  DH+D H T Q Y + K
Sbjct: 163 ------------RHYVVECSSYQIDLA--PSINPTAGILLNLTPDHLDRHGTMQHYASIK 208

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            RL          AII  DD++  ++ +R   AG +V+ +  +            +  + 
Sbjct: 209 ERLVAG----SETAIIGIDDSWCAQIAERLERAGRQVIRISKRLPLTDGYFADGSNLMEA 264

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           V        F + +  L G+    NAL A   C+ +G++   +   LE    +  R E V
Sbjct: 265 VHGRYSRVAFLEGIGSLRGQHNAQNALAAVAACLRVGLELGEIQSGLESFPGLAHRMEQV 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G       I    A  +++    L +   I           G  ++ G  P+ G      
Sbjct: 325 GRKDHVLFINDSKATNADAAAPALSSFNRIYW------IAGGLPKEGGIEPLRGFFPRIA 378

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAG 466
               I        E      A +   +P +   G    A+  A     + D    +V+  
Sbjct: 379 KAYLI-------GEAAPAFSATLGEAVP-YEISGTLAAAVEHAARDAARDDSGEAVVLLS 430

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
               +     N E +          I G+
Sbjct: 431 PACASFDQFKNFEVRGEAFRQAANAIEGV 459


>gi|84622537|ref|YP_449909.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|122879059|ref|YP_199603.6| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366477|dbj|BAE67635.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 452

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 143/416 (34%), Gaps = 36/416 (8%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 49  ALAQGYAPSNISPDATDVVVGNALSRGNPAVEAVLDAGRRYTSGAQWLAEQVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAAD----FGVSARLGQGREFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G+        ++ A        +    + 
Sbjct: 214 ARGRLIVNGEDAHLAEVL--AMGCWTSVEQFGFDASLDWSARLIAADGSAFAVLHRGAEV 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A V+  L     V  R E +G ++RG  +Y
Sbjct: 272 GHVQWPLLGRHNVLNGLAALAAVHAVGVDPATVMPALAHFQSVKRRLEVIG-SARGITVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       +VV                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRARVGAARVVVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 389

Query: 418 DNPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAI--RTAIEMLNKQDVLVVAGKG 468
              R E   D   I A++        +      AI  RT  E+    D +V    G
Sbjct: 390 --HRPELAWDAAPIIAQVRGEARVAQDV-----AILLRTLGEIAQPGDHVVFMSNG 438


>gi|313622984|gb|EFR93280.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria innocua
           FSL J1-023]
          Length = 461

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 100/283 (35%), Gaps = 24/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + ++    + 
Sbjct: 169 QYISMELSSFQLM--GVQTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHI-QQNQTADD 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+      +V+      +      V        +    E      
Sbjct: 226 FLVINWDQEELKNLTKQTK---AQVIPFSTTQRLEQGSYV----QNGNIMFDDEVIGSRD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 279 SILLPGEHNLENILASVAVAKTLGVTNEEIMYVLETFKGVEHRTQFV-VEWQGRKFYNDS 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      +R   +   +V+   G DR      ++       + I          
Sbjct: 338 KATN--ILATQSALRGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKSLIVF-------G 386

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI       +   A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGI-EVHYVDDVEAAVPVAYRESAPGDIILL 428


>gi|238855274|ref|ZP_04645593.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 269-3]
 gi|260664633|ref|ZP_05865485.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii SJ-7A-US]
 gi|282932433|ref|ZP_06337858.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|313471909|ref|ZP_07812401.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 1153]
 gi|238832166|gb|EEQ24484.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 269-3]
 gi|239529167|gb|EEQ68168.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 1153]
 gi|260561698|gb|EEX27670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii SJ-7A-US]
 gi|281303382|gb|EFA95559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
          Length = 456

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 122/354 (34%), Gaps = 42/354 (11%)

Query: 115 ENILAVTGTSGKSSV----ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     +  +     +SG  ++ +G      S               
Sbjct: 113 APFVCVTGSNGKTTTVMLTSEIIDHHLAKSGHHAYAVGNIGVPISEVVQKATKD------ 166

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                         + VE SS  L    +  IK    +  ++   H+DYH+T + Y  AK
Sbjct: 167 ------------DVLVVEISSFQLL--GVTDIKPKVAAIVDIYPTHLDYHKTMENYIAAK 212

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +         +   I   D        +    A  +  S+        +         ++
Sbjct: 213 LN-VTRFQTSDEYFIANFDQKEILAQEQATTKAKIQTFSMNDHSASYFVGDEYLESQSEK 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +    +         LPG+  + N++VA  +   +G +++ +   L        R ++V 
Sbjct: 272 IMKIAD-------IKLPGKHNLQNSMVAIAISKLMGAENSDIQAVLSTFAGARHRLQYVT 324

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T +   +IY D   T+  +E     I+  +     V+ G G DR     P++  +   + 
Sbjct: 325 TLNN-VKIYNDSKSTN--IEAATVAIKAFSEPE--VLIGGGLDRGFTFDPLVPLLKEHVK 379

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  +      D  +       GI          EA+ TA ++    DVL++
Sbjct: 380 AVVLYGETRYLLADAAR-----KAGIKEIKIVNTLKEAVPTAYKLTQPGDVLLL 428


>gi|86134329|ref|ZP_01052911.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
 gi|85821192|gb|EAQ42339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
          Length = 461

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 136/390 (34%), Gaps = 49/390 (12%)

Query: 83  SATIRSNTPIL--VVDNTRKFLSL--FASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           S  I  + P++  +VDN    +S   FA+         I+ +TG++GK++       I +
Sbjct: 86  SPGIPDSVPLVKKLVDNNIPVISEIEFAANFTK---ATIVGITGSNGKTTTTLLTHHILK 142

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            + L     G                     L      ++ +   +  +E SS  LD   
Sbjct: 143 NANLDVGAAGNIG--------------DSFAL-----QVAEKNYNNYVLEISSFQLD--G 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           +   +      TN+  DH+D +    Q Y N+K R+ +    +    I  ADD      +
Sbjct: 182 ITNFRPHIAILTNITPDHLDRYDYDFQNYINSKFRITKNQ-EETDFLIYDADDDVITGWL 240

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYN 314
           K  +    ++L    + +  +     A      +TI+++   F        + G+    N
Sbjct: 241 KE-NKTKAKLLPFSNEKELKY----GAFIKDNNITINIQKDKFYMPISSLSIKGKHNTKN 295

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A      + +    + E L        R E V        I    A   N       
Sbjct: 296 AMAATMAAQLLKVRKDAIKESLSNFEGAEHRLENVAKIKDVHYINDSKATNVN---ATFY 352

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +  +    I +V   G D+      ++  +   +  I  +  DN      EKI+    +
Sbjct: 353 ALECMDQQTIWIV--GGVDKGNDYTDLLPLVREKVKAIVCLGVDN------EKIKNTFGN 404

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I   +E     EA++ + ++  + D +++
Sbjct: 405 VIETIVETAGAEEAVKVSHKLAERGDAVLL 434


>gi|84394433|ref|ZP_00993149.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus 12B01]
 gi|84374932|gb|EAP91863.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus 12B01]
          Length = 373

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 113/315 (35%), Gaps = 46/315 (14%)

Query: 64  IAQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDN------TRKFLSLFASRLYGK 112
           +++GA   +   A      S+   S  I    P ++          R+   + A  +  +
Sbjct: 64  VSKGATVYIGHQASNVADASVVVVSTAINEENPEIIAAREARTPIVRRA-EMLAELMRFR 122

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
           H    +AV GT GK++  + V QI   +GL    +  G   ++ + A+            
Sbjct: 123 HG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSVGTNARLGSSRI------ 173

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              ++       + +                ++ +    TN+  DH+D +          
Sbjct: 174 --LIAEADESDASFL---------------HLQPMVSIVTNIEADHMDTYGGDFETLKQT 216

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQ 289
              F   LP    A++  DD   +E++ +      +V++ G+ +   I ++       + 
Sbjct: 217 FIDFLHNLPFYGQAVMCVDDPVVRELIPQVSR---QVITYGFSEDADIRIENYVQQGQQG 273

Query: 290 QVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + T+  +GK + D    +PG     NA  A  +     I    +L+ +        RF+ 
Sbjct: 274 KFTVVRKGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDH 333

Query: 349 VGTNSRGGRIYVDYA 363
           +G   R  R+   ++
Sbjct: 334 LGDMKR-VRVLQCWS 347


>gi|315125883|ref|YP_004067886.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (murein peptide ligase)
           [Pseudoalteromonas sp. SM9913]
 gi|315014397|gb|ADT67735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (murein peptide ligase)
           [Pseudoalteromonas sp. SM9913]
          Length = 451

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 98/305 (32%), Gaps = 24/305 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  I + +GL    +     I    Q+  L+         
Sbjct: 101 QKSWVLAVAGTHGKTTTASMLAWILEYAGLKPGFL-----IGGIVQNFGLSARVGQTPFF 155

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +                 H L                NL  DH D  +   A       
Sbjct: 156 VIEADEYDTAFFDKRSKFIHYL---------PRTLILNNLEFDHADIFEDLNAIKKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    LP+    +   DD    +V+ +   +    L     G     + + A  ++  V 
Sbjct: 207 LI-RTLPQSGKVLWPKDDEALSDVIAKGLWSESETL-----GDDWDYQLLKADGSQFNVL 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ + +     +   GE  V NA++A      +GI     +  L +      R E    +
Sbjct: 261 LNTQLQ-GVVNWQAIGEHNVKNAMMAIAAARHVGIAIEHSIAALGEFISPKRRMEL-KAD 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLA 410
               ++Y D+AH   +++  L  +R       I+            G        +L  A
Sbjct: 319 INNIKVYDDFAHHPTAIQTTLAGLRAKVGNDKIIAILEPRSNTMKMGVHQFTLLDSLRDA 378

Query: 411 DIAIV 415
           D  ++
Sbjct: 379 DEVLL 383


>gi|323706122|ref|ZP_08117691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534566|gb|EGB24348.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 454

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 147/406 (36%), Gaps = 54/406 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G E +VVS   S+      +  +  I V+        L            I A+TGT+G
Sbjct: 67  NGTEMVVVSPGISMDSDIVVLSKSKGIDVIGEVEFAYRL--------SKAPIYAITGTNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S + +I + SG+ ++  G                          + +++     +
Sbjct: 119 KTTTTSLLGEIFKASGVKTYVAGNIGYPLVE------------------AAINANAEDVI 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SS  L+   +   K +  +  N+  DH++ H+T + Y   K R+FE     +   +
Sbjct: 161 VAEISSFQLE--TIKEFKPVISAIINITPDHLNRHKTLENYIEIKGRIFENQT-ADQFTV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-- 303
           +  DD     + K+A    C V             +        ++ IS  G+    +  
Sbjct: 218 LNYDDKNISSLFKKAK---CNVFPFSRN----RALEYGTYLENGKIIISANGEKSTIIDI 270

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   V NA+VA+ +    GID  ++ E L     V  R EFV  N  G + Y D
Sbjct: 271 EDIYIPGNHNVENAMVASTMAYLAGIDIKVISETLRTFKGVEHRIEFV-RNVNGVKYYND 329

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+   +  +K I  +     I++   G D+              +  + ++      
Sbjct: 330 SKGTNP--DAAIKAIEAMKGP--IILIAGGYDKGVSFDEFTASFKGRVKKLILL------ 379

Query: 422 SEDPEKI-RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E  + I ++ I  G      I   +  +A+  A       D +++
Sbjct: 380 GETKDLIYKSAIKEGYSEDDVIFVESIDDAVYAAYNAAKPGDNVLL 425


>gi|213163170|ref|ZP_03348880.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 517

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 110 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 168 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 216 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDTSEWEVWLD 271

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 272 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 329

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 330 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 389

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 390 EVFLLQP-PHI--PWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 443


>gi|313885109|ref|ZP_07818861.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619800|gb|EFR31237.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 457

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 135/417 (32%), Gaps = 57/417 (13%)

Query: 60  IPQAIAQGAEAI-------VVSSAYSLQDFSATIRSNTPILVVDNTRKFLS----LFASR 108
           +   + +G   +       ++ + +     +  I  + PIL     +          AS 
Sbjct: 49  LESLLERGLVLVDGQQPVSLLEAGFDFIVKNPGIPYSIPILQAAKAQSIPIYTDIEIASW 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT--STISSFAQDNRLTTPS 166
                   ++A+TG++GK++  + + +I     + +  IG    S +     D RL    
Sbjct: 109 FSQ---APMIAITGSNGKTTTTALINEILGEKAILAGNIGIPILSVVGETQADKRL---- 161

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                               +E SS  L        K   G  TN+   H+DYH + +AY
Sbjct: 162 -------------------VMEISSFQL--QGTSFFKPKIGVITNIYPTHLDYHGSMEAY 200

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+++   L  ++     Y      + + + A +     L          L       
Sbjct: 201 IAAKLKIAANLDEQDFLVYNYD----QEILQEAAKSIKAIKLPFSRTQVTPELVAEGLYL 256

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              QV    +         +PG+  + N L A  + +   +D   V   +E    +P R 
Sbjct: 257 QDGQVIYHNQPILSLDSIKIPGDHNIENVLAALAVAVIEKVDLPQVKATIEAYKGMPHRI 316

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V  + +G   Y D   T+  +   +  + +     I +  G G DR      ++  + 
Sbjct: 317 EHV-ASFKGREFYNDSKATN--MTATITALASFNQDLIYI--GGGLDRGNEFDDLIPHLG 371

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                           E  EK+          F+   N  EA   A +      VL+
Sbjct: 372 HIKQAFLY-------GETKEKMAKAFEKVDIPFVLADNLREASHLAYQATQAGQVLL 421


>gi|294506459|ref|YP_003570517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           M8]
 gi|294342787|emb|CBH23565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           M8]
          Length = 481

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 107/293 (36%), Gaps = 22/293 (7%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFE 235
           L ++    V +E SS  LD   ++  +       N+  DH+  +    +AY  AK  +F 
Sbjct: 178 LETEPTDVVVLEVSSFQLDH--VETFRPRVSVLLNITPDHLGRYDHDFEAYAQAKHNIFR 235

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +       DD     V + A   G R +++  +G    +    A     ++ +  
Sbjct: 236 NQGEGDVVVYNRDDDDVRDAVEEAAAEQGVRPMAITREG----VPAAGAGFRDGRIVLRT 291

Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + +D   +      L G   +YN+L AA     + +++ ++ E L     VP R E V T
Sbjct: 292 DDEDDSLMPQDELALRGRHNMYNSLAAAVSARVMEVENDVIRESLSGFEGVPHRLEEVRT 351

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 +    A   N++   L++       R IV+   G D+      +   +   +  
Sbjct: 352 VDDVLYVNDSKATNVNAVWYALESFD-----RPIVLIAGGRDKGNDYTDLKPLVRDQVRA 406

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +       E  EK+  E+    P         +A+  A       DV+++
Sbjct: 407 VVAL------GESTEKVERELGGEAPDHSRAATMEDALTQAQRAAQPGDVVLL 453


>gi|146291592|ref|YP_001182016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           putrefaciens CN-32]
 gi|145563282|gb|ABP74217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           putrefaciens CN-32]
          Length = 439

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 113/334 (33%), Gaps = 47/334 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +L         +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ASQIIISPGIALDTAEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L S+      +
Sbjct: 122 TVTTLVGEMLREAGMAVAVGGNIGVPA--------------------LDLLSENAEIFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +        I  
Sbjct: 162 ELSSFQLE--TTHSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ----SRSIIFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDA +        N      S G    +G    +      H + ++    E        
Sbjct: 216 RDDALTIPTEPMNQN------SFGLAPPEGDEWGICDSKIYHGRSEIMPITE-------V 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  L  A+G+D  ++ +       +  R E VG       +    A 
Sbjct: 263 SLIGSHNHANLLAAMALVYAVGVDKQVIAKVARTFTGLSHRCEVVGIKGGVTYVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +    L  +       I++  G G   D   
Sbjct: 323 NVGATVAALDGLSDHLGDIILIAGGDGKGADFSP 356


>gi|227535241|ref|ZP_03965290.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187125|gb|EEI67192.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 459

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 19/266 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +       TN+   H+D+H  +  Y  AKMR+     P +   I+  D     E+ K
Sbjct: 177 IKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDD-YFIMNWDLPEMHELAK 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           ++            +G         A      +T   +         +PG   + NAL A
Sbjct: 236 QSKAQIVPFSRKNAEGA-------RAQLIDGWLTFDGDRIMKASEMQIPGLHNIENALAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                  G+    + E L     V  R +++ T   G R+Y D   T+  +E     +  
Sbjct: 289 IAAVKLEGVGDDAIREVLRTFSGVKHRIQYLET-IDGRRVYNDSKATN--VEAATVALNA 345

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                +      G DR      +   +   +  + +     P      KI  +   G+P 
Sbjct: 346 FDQPIVW--LAGGLDRGLPMDALTPLVKKHVKSMVVFGQTAPLM---GKIAKD--AGVP- 397

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                N + A+  A E+    DV+++
Sbjct: 398 VQTTENVMTAVPLAYEVSRPGDVILL 423


>gi|312963256|ref|ZP_07777740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Pseudomonas fluorescens WH6]
 gi|311282522|gb|EFQ61119.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Pseudomonas fluorescens WH6]
          Length = 455

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 130/409 (31%), Gaps = 49/409 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 71  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       +  +  
Sbjct: 125 SMLAWVLEHAGMSPGFL-----IGGVPQNFSVS-----------ARLGDTPFFVIEADEY 168

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 169 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +   + V++        V + G  G++          +  +  +  EG+      + + 
Sbjct: 228 TEPALQRVIEM--GCWTPVQTTGAGGQWQV---KLLSEDGSRFEVLFEGQAQGIVEWDMT 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NALV       +G+  ++ +  L     V  R E V  +  G  IY D+AH   
Sbjct: 283 GQHNVANALVTLAAARHVGVVPSMGIAALSAFKSVKRRMEKV-ADVNGITIYDDFAHHPT 341

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R       I+            G        +++ AD A+      +  D 
Sbjct: 342 AIATTLDGLRKRVGDAPIIAIIEPRSNSMKLGAHRDGLPESVNDADQAVWYAPPNLGWDL 401

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P       + + +   I G          I    +       +VV   G
Sbjct: 402 PGIAALCTVPSTVRDSIEGI---------IEYVKQQAKPGTHVVVMSNG 441


>gi|58425181|gb|AAW74218.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 455

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 143/416 (34%), Gaps = 36/416 (8%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 52  ALAQGYAPSNISPDATDVVVGNALSRGNPAVEAVLDAGRRYTSGAQWLAEQVLPGRDTLA 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A D          L +   ++  
Sbjct: 112 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAAD----FGVSARLGQGREFVVE 162

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 163 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G+        ++ A        +    + 
Sbjct: 217 ARGRLIVNGEDAHLAEVL--AMGCWTSVEQFGFDASLDWSARLIAADGSAFAVLHRGAEV 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A V+  L     V  R E +G ++RG  +Y
Sbjct: 275 GHVQWPLLGRHNVLNGLAALAAVHAVGVDPATVMPALAHFQSVKRRLEVIG-SARGITVY 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       +VV                 +A  L  AD  +   
Sbjct: 334 DDFAHHPTAIATTLQGLRARVGAARVVVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 392

Query: 418 DNPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAI--RTAIEMLNKQDVLVVAGKG 468
              R E   D   I A++        +      AI  RT  E+    D +V    G
Sbjct: 393 --HRPELAWDAAPIIAQVRGEARVAQDV-----AILLRTLGEIAQPGDHVVFMSNG 441


>gi|294338816|emb|CAZ87150.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) MurD [Thiomonas sp. 3As]
          Length = 514

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 135/395 (34%), Gaps = 63/395 (15%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +L A R    +   I+A+TGT+GK++V      + +R+G S    G  S           
Sbjct: 108 ALDALREERGYAPKIVAITGTNGKTTVTRLTGLMLERAGWSVAVAGNIS----------- 156

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
             PS + + +A             +E SS  L  H ++G    A +  N+ +DH+D+H  
Sbjct: 157 --PSMLDVLQARLQADDLPA-AWVLELSSFQL--HGMEGFAADAATVLNITQDHLDWHGD 211

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             AY   K  +F      +   ++  DD     + +         LS   Q     + + 
Sbjct: 212 MTAYAADKANIF-GNQSAQGVMVLNCDDPQVLAMQRPGRKLRRFGLSAPQQPGDWGVVRE 270

Query: 283 CAIHN-------------KQQVTISVEG-------------KDFDFLFPLPGE------- 309
             I               ++   IS +G                     +P E       
Sbjct: 271 GGIDWLARALPEEDSPRNRRGAAISPQGAGQGLGRPGALPEARLQMQRLMPAEALRIQGA 330

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL A  L  A+G   A +L  L +    P R + V     G R   D   T+   
Sbjct: 331 HNVANALAALALGDAVGAPLAPMLHALREYRGEPHRMQTVAV-IDGVRWIDDSKGTNVGA 389

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +             +V+   G  + Q   P+  + A   A + I         D + I 
Sbjct: 390 TVAALAGMETP----VVLIAGGDGKGQDFSPLRAQAARLRAAVLI-------GRDAQAIA 438

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AE+  G+   +   +  +A++ A  +    D  ++
Sbjct: 439 AEL-QGLAPTVFTQSLEQAVQRAATLAKTGDAALL 472


>gi|294666197|ref|ZP_06731451.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604015|gb|EFF47412.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 452

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 143/412 (34%), Gaps = 28/412 (6%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+ QG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 49  ALEQGYAPSNISPDATEVIVGNALSRGNPAVEAVLDAGRRYTSGAQWLAERVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A+D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGREFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G++       ++ A        +      
Sbjct: 214 ARGRLIVNGEDAHLAEVL--AMGCWTPVERFGFEASLDWSARLIAADGSAFAVLHRGVGI 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A G+D A V+  L +   V  R E +G N+R   +Y
Sbjct: 272 GQVQWPLVGRHNVLNGLAALAAVQAAGVDPATVMPALAQFQSVKRRLEVIG-NARDITVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       ++V                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRAKVGAARVLVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              R E      A II  + G     + ++A+   + E+    D +V    G
Sbjct: 390 --HRPELAWD-AAPIIAQVRGDAHVAHDVDALLQTLGEIARPGDHVVFMSNG 438


>gi|253580162|ref|ZP_04857429.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848681|gb|EES76644.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 451

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 113/306 (36%), Gaps = 19/306 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D       +  N+  DH++ H T + Y   K  L  E    E   ++ 
Sbjct: 164 EISSFQLE--TIDEFAPKVSAILNITEDHLNRHHTMEEYIRVK-ELITENQGTEDVCVLN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D   +E  K          S     + I+L     I    +  I V   +      L 
Sbjct: 221 YEDEVLREFGKHLTPRVVYFSSGRKLDEGIYLDGNKIILKDGEKEIEVVKTE---DLKLL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N + A  +    G+    + + + +   V  R E+V    + G +Y + +  +N
Sbjct: 278 GKHNFENVMAAVAMAYYDGVSLDSIRKSICEFTAVAHRIEYVTE--KKGVVYYNDSKGTN 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +  +K I+ +    +++  G G D+  G    +      +  + ++       +  EK
Sbjct: 336 P-DAAIKGIQAMNRPTLLI--GGGYDKQSGYDEWIEAFDGKVRYLVLI------GQTKEK 386

Query: 428 IR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           I+ A   HG    I   +  EA++   E     D ++++           N E++  +  
Sbjct: 387 IKEAAEKHGFHDIILCEDLKEAVKVCEEKAQPGDAVLLSPACASWGQ-FDNYEQRGDMFK 445

Query: 487 DIIREI 492
           + +R +
Sbjct: 446 EYVRNL 451


>gi|156935392|ref|YP_001439308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533646|gb|ABU78472.1| hypothetical protein ESA_03250 [Cronobacter sakazakii ATCC BAA-894]
          Length = 438

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  +   + +V +   F          +    ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSAAAEAGVEIVGDIELF--------CREAQAPVIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  +G     +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLEEGRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E      +  ++
Sbjct: 158 ELSSFQLE--TTFSLKAAAATILNVTEDHMDRYPLGLQQYRAAKLRIYEN----ATVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + ++ + V G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGIDVGDYHLNR-----QQGEIWLRVRGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLVGQHNYTNALAALALADAAGLPRASSLKALTTFGGLAHRFQLAYEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D    + 
Sbjct: 323 NVGSTEAALNGL--HLDGTLHLLL-GGDGKSADFSPLAHYLTGDRVRLYCFGRD---GDA 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI   +          EA++     +   D++++
Sbjct: 377 LAALRPEISERMDTM------EEAMKVIAGRVQPGDMVLL 410


>gi|116512986|ref|YP_811893.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|123320128|sp|Q02W92|MURC_LACLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116108640|gb|ABJ73780.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 443

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 100/319 (31%), Gaps = 42/319 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG  +   +   +  +               
Sbjct: 106 IGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDGTGRGNAGSEYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY +  +   +A  + +   
Sbjct: 155 ----------EYERHFMPYH------PEYTIMTNIDFDHPDYFEGIEDVTSA-FQDYANN 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           + K   A  Y +D   +++  +A      +   G++       + +              
Sbjct: 198 IKKGIFA--YGEDVNLRKLSAKAP-----IYYYGFEANDDYRAENLIRNTRGSSFDAYFR 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F+ P  G+  V NAL    +C  +G+D   V +HL     V  RF         
Sbjct: 251 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTDVADHLLTFRGVKRRFTEKKVGE-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +E  L   R       I+ VF                  LD AD   
Sbjct: 309 TVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLDHADTVY 368

Query: 415 VTDDN--PRSEDPEKIRAE 431
           +       R  D  +I A+
Sbjct: 369 LAQIYGSAREVDHHEITAQ 387


>gi|331671380|ref|ZP_08372178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA280]
 gi|331071225|gb|EGI42582.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA280]
          Length = 457

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +      S  P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQP---SHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|116494762|ref|YP_806496.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           ATCC 334]
 gi|239631641|ref|ZP_04674672.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301066323|ref|YP_003788346.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           str. Zhang]
 gi|122263820|sp|Q039R8|MURD_LACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116104912|gb|ABJ70054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei ATCC 334]
 gi|239526106|gb|EEQ65107.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438730|gb|ADK18496.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           str. Zhang]
          Length = 459

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 19/266 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +       TN+   H+D+H  +  Y  AKMR+     P +   I+  D     E+ K
Sbjct: 177 IKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDD-YFIMNWDLPEMHELAK 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           ++            +G         A      +T   +         +PG   + NAL A
Sbjct: 236 QSKAQIVPFSRKNAEGA-------RAQLIDGWLTFDGDRIMKASEMQIPGLHNIENALAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                  G+    + E L     V  R +++ T   G R+Y D   T+  +E     +  
Sbjct: 289 IAAVKLEGVGDDAIREVLRTFSGVKHRIQYLET-IDGRRVYNDSKATN--VEAATVALNA 345

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                +      G DR      +   +   +  + +     P      KI  +   G+P 
Sbjct: 346 FDQPIVW--LAGGLDRGLPMDALTPLVKKHVKSMVVFGQTAPLM---AKIAKD--AGVP- 397

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                N + A+  A E+    DV+++
Sbjct: 398 VQTTENVMTAVPLAYEVSRPGDVILL 423


>gi|15611744|ref|NP_223395.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori J99]
 gi|4155222|gb|AAD06244.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
          Length = 493

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 137/352 (38%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q    +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          ++ V +          +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVRNVQSTLKGTSFETLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G    F   + GEF  YN   A  +   +G+++  +   + +L  +  R + +  N + 
Sbjct: 325 NGVWESFETKVLGEFNAYNIASAILIAKHLGLETERIKRLVFELKPINHRLQLLEANQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLHQGRKVIVTPGLVESNTESNEALAQKIDGVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASKLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|269127138|ref|YP_003300508.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
 gi|268312096|gb|ACY98470.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
          Length = 469

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 140/415 (33%), Gaps = 47/415 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+ +G + +VVS  +          +   + +         L  SR  G      LA+T
Sbjct: 62  DALPEGTDLVVVSPGWRPDAPLPAAAAAAGVEIYGEVELAWRL--SREDGGRAAPWLALT 119

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GK++    +  I + +G  +  +G   T                     +       
Sbjct: 120 GTNGKTTTVRMLACILRAAGHRAPAVGNVGT-------------------PIVEAALDPS 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              ++VE SS+ L  H    +   AG+  N+  DH+D+H + +AY   K +++       
Sbjct: 161 CDVLAVELSSYQL--HWSSSLAPEAGAVLNVAPDHLDWHGSLEAYAADKGKIYA----PG 214

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           + A+  ADD  S  +   A  A    L +   G+   ++ +               +   
Sbjct: 215 TVAVFNADDEISTRLAAGAERAVGFTLGIPAPGQLGVVEDLLVDRAFTGDPRREAAELAQ 274

Query: 302 FLFPLPGE-FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                P     V NAL AA L  A G+    V E L      P R   V T +  G  Y+
Sbjct: 275 LSDVRPFAPHNVANALAAAALARAHGVPPQAVAEGLRAFVPDPHRIAHVATVN--GVDYI 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D +  +N          ++ +    V    G  +      ++   A  L    ++  D  
Sbjct: 333 DDSKATNP----HAAAASLAACESAVWIAGGLLKGADVTELVRSCAPRLRAAVLIGADR- 387

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGN-----RIEAIRTAIEMLNKQDVLVVAGKG 468
                 KI   +    P    ++  +         +  A  +    D +++A  G
Sbjct: 388 -----AKIAEALARHAPEVPVVDIPDTHTGTMDIVVAEAARLARPGDTVLLAPAG 437


>gi|313637023|gb|EFS02594.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria seeligeri
           FSL S4-171]
          Length = 455

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 104/285 (36%), Gaps = 26/285 (9%)

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + ++   ++
Sbjct: 162 EQYISMELSSFQLM--GVKTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHI-QQNQTED 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I  D    K + K+         +    G+  +++          +    E     
Sbjct: 219 DFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFYDEVIGAR 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPGE  + N L    +   +G+ +  ++  LE    V  R +FV    +G + Y D
Sbjct: 272 DSILLPGEHNLENVLAXXAVAKTLGVANEEIMHVLETFKGVEHRTQFV-VEWQGRKFYND 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+  +      ++   +   +V+   G DR      ++       A I         
Sbjct: 331 SKATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKALIVF------- 379

Query: 422 SEDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
            E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 380 GETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|169827009|ref|YP_001697167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
 gi|168991497|gb|ACA39037.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
          Length = 276

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 90/264 (34%), Gaps = 23/264 (8%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K      TNL   H+DYH T   Y  AK         +    I  AD      V+  A  
Sbjct: 7   KPKISILTNLYDAHLDYHGTFDNYAEAKFG-VTRNQDESDYFIYNADQP---IVVGYAAK 62

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAG 320
           +  + +     G+ +H             TI  +G  +       LPG+  + N L A  
Sbjct: 63  SNAQKIPFSSNGRTVHGIS------ADDTTIYWQGDPYMDRANIALPGKHNLENILAAVA 116

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            CI +G D   + E L     V  R +FV     G +IY D   T+      L     + 
Sbjct: 117 ACILVGCDKGKMEEVLATFGGVRHRTQFV-REWNGRKIYNDSKATN-----CLATKSALD 170

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + +  V+   GG         +      +  +    +   R  +  K       G+   +
Sbjct: 171 AFQAPVILLAGGLDRGHSFEELRPSMNHVKGVVAFGETGLRFVEFAKSC-----GVQQTV 225

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
              N  +A+  A  M  + D++++
Sbjct: 226 IAQNVEDAVHYAAPMSAEGDIILL 249


>gi|238784570|ref|ZP_04628577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           bercovieri ATCC 43970]
 gi|238714536|gb|EEQ06541.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           bercovieri ATCC 43970]
          Length = 438

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + +V +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSDAADAGVEIVGDIELF--------CRENQVPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                        AL+ L  +    V +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGV-------------------PALTLLKQEN-QLVVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 212 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  +  L  L     +P RF+ V  ++    I    A 
Sbjct: 263 KLTGRHNYTNALAALALADAVGIPRSSSLTALTTFTGLPHRFQLVFEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +      +   +  D   I     D      
Sbjct: 323 NVGSTEAALDGLQ--VDGTLHLLL-GGDGKSADFSGLTRFLQGDHIKIYCFGRD------ 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                AE+   +    E     +A+    + L   D++++
Sbjct: 374 -GDELAELRPEVSQLTET--MEQAMVLLSKSLAPGDMVLL 410


>gi|33864565|ref|NP_896124.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. WH 8102]
 gi|44888172|sp|Q7UA71|MURC_SYNPX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33632088|emb|CAE06544.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. WH
           8102]
          Length = 467

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 134/420 (31%), Gaps = 60/420 (14%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A      +      +   I    +    L            +  +AV G+ GK++
Sbjct: 77  VVVSTAIPTSNPELRRARDAGLEIWHRSDLLAALID---------QQASIAVAGSHGKTT 127

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            ++    +   +G       PT+ I                              H  + 
Sbjct: 128 TSTLTTTLLMEAGED-----PTAIIGGIVPCLGSNG----------------HAGHGRLL 166

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L   +   G  TNL  DH D++       N  MRLF +        +   
Sbjct: 167 VAEADESDGSLVKFRPQLGLITNLELDHTDHYDGLDDLINT-MRLFAD---GCDQVLANR 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
           D    KE ++   +A   V S    G       +    ++        G    DF+ PLP
Sbjct: 223 DCPILKEHIQ--PDAWWSVTSA--NGVDFAALPLQLDGDRCLARFYENGAPVGDFMLPLP 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NA  A   C   GI    ++  L  L     RF+  GT   G  I  DYAH  +
Sbjct: 279 GLHNLSNAAGALAACRMEGIPFERLVNGLTALKPPGRRFDLRGTWE-GRYIVDDYAHHPS 337

Query: 368 SLEMILKNIRTI----------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            ++  L   + +             R++ VF         +       AL   D  ++  
Sbjct: 338 EVKATLAMAQLMVSSGRSPFPSPPQRLLAVFQPHRFSRTQEFLESFASALQNCDSLLLAP 397

Query: 418 DNPRSEDP-----EKIRAEIIHGIPGFIEK--GNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
                E+P      +  A+ I  +   +E    + ++ +   +     ++D+++  G G 
Sbjct: 398 VYSAGEEPLKGVCSQTLADRIQELKPDLEIAVADNLDHLTQLVRTRSQREDLVLAMGAGD 457


>gi|187735187|ref|YP_001877299.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
 gi|187425239|gb|ACD04518.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
          Length = 460

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 19/275 (6%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+  DH D + + +    +  RL  +++P+   A++ ADD    +V+K A   
Sbjct: 180 PELVVINNIEFDHADIYNSLEEIKLSFRRL-TQIIPRNGLALVNADDPNCLDVVKGAP-- 236

Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            C V +VG+     I +  V    +    T+  EG  +    P+ GEF + NA +A    
Sbjct: 237 -CPVKTVGFSDSSNIRILDVETSTDGSHFTL--EGTRYYV--PMIGEFNIRNAAMAIAAA 291

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE-MILKNIRTITS 381
              G++   + + + +   V  R E  G    G  +  D+AH   +++  IL   +    
Sbjct: 292 QFAGLNVKQLADSMSRFEGVARRQEVKGV-VNGISVVDDFAHHPTAIKQAILGLRQRYPE 350

Query: 382 GRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD-DNPR------SEDPEKIRAEII 433
            RI  +F    +  +         ++L  AD  +V   D+P         D  K+  ++ 
Sbjct: 351 SRIWAIFEPRSNTTRRNIFQNELALSLATADFPVVAAVDHPDKVALEERLDLTKLSNDLS 410

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +  G+  E +    +     DV++V   G
Sbjct: 411 ALGKDALIGGHAQEIVSAVCKKAQPGDVILVMSNG 445


>gi|295101921|emb|CBK99466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii L2-6]
          Length = 466

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 116/363 (31%), Gaps = 44/363 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFQFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRRVHLGGNIG----------------A 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L  +S   V    VE SS  L               TN+  +H+D+H+  Q Y +
Sbjct: 157 ALLPMLPEVSPDDVAV--VELSSFQLISMHQS---PNIAVVTNVTPNHLDHHKDMQEYID 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +           + Y ++  S+ + K           +        L++   +   
Sbjct: 212 AKRNILLYQKQPCRAVLGY-ENEISRSMQKDCKGKQVWFTRLHETDNGAFLREDGMLCMA 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +   ++      D          + N L AA       +    +         V  R E 
Sbjct: 271 ENGVVTPFLAQKDVKLRGL--HNIENLLAAAAAVWGE-VPVEAIQLVGSSFTGVEHRIEP 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V      G  Y + +    S    +  +R+      +++   G D+     P+  +I   
Sbjct: 328 VRV--LDGVTYYNDS-IGTSPTRTIAGLRSFDQK--VILIAGGYDKHIPYEPLAPEITAH 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDV 461
           + ++ ++    PR E    +R +     P F E         N   A+  A       D+
Sbjct: 383 VKNLVLMGATGPRIEK--AVRED-----PNFHEAELPIQHADNMQHAVELARACAKPGDI 435

Query: 462 LVV 464
           +++
Sbjct: 436 IIL 438


>gi|238750103|ref|ZP_04611606.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia rohdei ATCC 43380]
 gi|238711647|gb|EEQ03862.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia rohdei ATCC 43380]
          Length = 461

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 122/364 (33%), Gaps = 36/364 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  V  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMVAWILEACGYEPGFV--IGGVPGNFNVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I+  +D + K+VM  A         VG  G ++  K      +     
Sbjct: 207 LV-RIVPGKGKIIVPDNDNHLKQVM--AMGCWSEQELVGETGSWLARK---VSTDASVFE 260

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++ +   +  + L GE  ++N L+A      +G+  A     L        R E  G 
Sbjct: 261 VLLDNELVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRVLGDFINARRRLELRG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LD 408
            + G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L 
Sbjct: 320 EAHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSLG 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVV 464
            AD   +         P+ I  +++      I+  +    I T ++M        D ++V
Sbjct: 380 RADEVFLFQ-------PQHIPWQVVEVAEACIQPAHWSADIDTLVDMVVKTAQPSDHILV 432

Query: 465 AGKG 468
              G
Sbjct: 433 MSNG 436


>gi|291457563|ref|ZP_06596953.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
 gi|291380616|gb|EFE88134.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
          Length = 481

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 125/372 (33%), Gaps = 43/372 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL +   G    I+S      L+  +       
Sbjct: 100 PAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAG---NIASGDMSMSLSRCATNPKHDV 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L            VE SS  L  H  D ++L   + TN+  DH+D+H  ++ Y   K ++
Sbjct: 157 L-----------CVELSSFQL--HFTDSLELDCAAITNIADDHLDWHGGRENYAADKSKV 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGY-----------QGKFIHLKK 281
           F             A DA   E+ + A   AGCR +                G  +    
Sbjct: 204 FRA---ARRVIAYNAQDAKVSELAQAAPVAAGCRKVGFTLNEPEAGQIGIADGWIVDRSG 260

Query: 282 VCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           V      + + ++   +               V +AL A  L + +G D    LE L+  
Sbjct: 261 VAGGKVGEPIKLAAIADFTHLMEPDGSLYPHLVADALTALVLVLGLGADRETALEALQTF 320

Query: 340 HVVPGRFEFVGTNS-RGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                R E V      GG I +VD +  +N                + +    G  +   
Sbjct: 321 KPGGHRIETVAEARVNGGVIRFVDDSKATNGHAANASLSSFSAKSVVWI--AGGLAKGSR 378

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAI 453
              ++   A  +    I+  D  P  E       +I   +    +     +R  A+    
Sbjct: 379 FEDLVSNQAHTIKAAVIIGKDQQPMIEAFRSQAPDIPVTVIDPQDNDTVMDR--AVAACG 436

Query: 454 EMLNKQDVLVVA 465
           +     DV+++A
Sbjct: 437 DYAAAGDVVLMA 448


>gi|312959055|ref|ZP_07773574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
 gi|311286825|gb|EFQ65387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
          Length = 448

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 120/350 (34%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A++G++ KS+V + V ++   +G      G   T                    AL
Sbjct: 109 APIVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGT-------------------PAL 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             LS + V    +E SS  L+      +     +  N+  DH+D +    AY  AK R+F
Sbjct: 150 DLLSDE-VELYVMELSSFQLE--TTHDLGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G          +   + ++ +   
Sbjct: 207 RG----AKQFVVNRQDALSRPLIGEGMPCW----TFGLGKPDFKAFGIREENGEKYLAFE 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L     +  R ++V     
Sbjct: 259 FQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLSSLRAFGGLEHRCQWVRDLDG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    +    ++ +     G+++++   G  +    + +   +A     + +
Sbjct: 319 VSYYNDSKATNVGAALAAIEGLGADIDGKLVLI-AGGDGKGADFKDLKAPVAEHCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D + I A +   +P  +   +  +AI     +    D +++
Sbjct: 378 M------GRDADLIAAALGDAVPQ-VRATSLDDAIAQCKALAQPGDAVLL 420


>gi|168821169|ref|ZP_02833169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342272|gb|EDZ29036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088843|emb|CBY98601.1| putative ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 459

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 116/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P     I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGLGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|20808074|ref|NP_623245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479543|ref|ZP_05092860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
 gi|30316069|sp|Q8R9G4|MURD_THETN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|20516656|gb|AAM24849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034511|gb|EEB75268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
          Length = 450

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 149/404 (36%), Gaps = 54/404 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G E +V+S   SL+        +  + ++        L            I A+TGT+G
Sbjct: 67  KGIELVVLSPGISLESEIVKKAKDMGLEILGEVELAYRL--------SKAPIYAITGTNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S + ++ + +G   +  G       +                  + L +    H+
Sbjct: 119 KTTTTSLLGEMFRNAGRKVYVAGNIGYPLIY------------------AALEAGPNDHI 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SS  L+   +   +       N+  DH+D H+T + Y N K R+FE    +E   +
Sbjct: 161 VAEISSFQLE--TVKEFRPKISCIINITPDHLDRHKTFENYANIKGRIFENQ-REEEYVV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +  DD  +  + +RA     +V     +   +     K   ++ + +  I VE       
Sbjct: 218 LNYDDPVTWGLKERAK---AKVFPFSRKKVLENGAYVKEGFLYLQNKKVIKVED------ 268

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PGE  + NAL A+ +    GI+   +   L     V  R EFV     G + Y D  
Sbjct: 269 IYIPGEHNLENALAASSVAYLSGIEVDAIETTLRTFKGVEHRIEFV-AEIEGIKFYNDSK 327

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            T+   +  +K I+ + +    +V   GG     +     K         I+       +
Sbjct: 328 GTNP--DASIKAIQALKT---PIVLIAGGYDKGSEFDEFVKTFDKKVRKLILI-----GQ 377

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +KI+   +             +  EA+R A E+  K D +++
Sbjct: 378 TAQKIKKTALKYSYPEEDIFLVDSLEEAVRKAYEVAEKGDSVLL 421


>gi|283783875|ref|YP_003363740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
 gi|282947329|emb|CBG86874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
          Length = 438

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L     +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPVLSAAADAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L   G     +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAGRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    Q Y  AK+R++E      S  ++
Sbjct: 158 ELSSFQLE--TTYSLQAEAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN----ASVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADARCVSFGVNMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLGRYLTGDRVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAE------QTQTMEEAMRLIAPRVKPGDMVLL 410


>gi|330686337|gb|EGG97942.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU121]
          Length = 449

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 127/352 (36%), Gaps = 46/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + + S L+    G    ++S          S  YL   L
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKNSRLTGRLSGNIGYVASK---VAQEVSSKEYLITEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH++ + Y NAK +++
Sbjct: 168 SSFQLLGIEQY-----------------KPHIAIITNIYSAHLDYHESLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    Y +  +  + N   + L    Q      + V  I+ K    I 
Sbjct: 211 KNQTEDD-----YLICNYHQRHLIESENLKAKTLYFSTQ------QVVDGIYIKDGF-IE 258

Query: 295 VEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G     +    LPGE  + N L A    I  G+    + + L     +  R +++GTN
Sbjct: 259 YKGVRIISVEDLVLPGEHNLENILAAVLAAILAGVPIKAIADSLTTFSGIEHRLQYIGTN 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 Y + +  +N+L      + +     I +    G DR      ++  +      +
Sbjct: 319 RTNK--YYNDSKATNTLATQF-ALNSFNQPIIWLC--GGLDRGNEFDELIPYMKNVRVMV 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     E  EK            I+  +  +A+    +++   DV+++
Sbjct: 374 VF-------GETQEKFAKLGNSQGKYVIKATDVQDAVDKIQDVIEPNDVVLL 418


>gi|254515243|ref|ZP_05127304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
 gi|219677486|gb|EED33851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
          Length = 456

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 132/397 (33%), Gaps = 48/397 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++VS   S Q+       +    +  +   F++  A+         ++ +TG++ KS
Sbjct: 78  AAQLIVSPGISPQEPWLQRAVSAGAKLCGDIDLFVAAAAA--------PVIGITGSNAKS 129

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   +  + Q +G  +   G                        AL  L  Q      +
Sbjct: 130 TVTEMLGAMVQAAGRRTAVGGNLGV-------------------PALDLLDDQ-TEFYVL 169

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R   + L   +  NL  DH+D H +   Y  AK R+F          +  
Sbjct: 170 ELSSFQLE--RAGPLNLEVATVLNLTPDHLDRHGSMPLYHQAKHRIFNGC----RAVVFN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  +  +   A         +G     +    +  +  +Q +    E         LP
Sbjct: 224 VDDPLT--IPPLAAGRRQVSWRMGEP--ELTGFGLRLVDGEQMIVEGFEPLMRADEVSLP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  L  AI +    +L  L     +  R E V     G R   D   T+ 
Sbjct: 280 GRHNLANALAALALGAAIDLPRDAMLSVLRSFKGLEHRCELV-LEREGVRWINDSKATN- 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  I  + +   +++   G D+    R +   +A     + ++       E  + 
Sbjct: 338 -VGAALAAINGLGAEHRLILIAGGRDKGADFRSLAPAVAAHCEVVLLI------GEAADG 390

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   +       I       A+  A       D++++
Sbjct: 391 IATALGASCDTVI-AETLEHAVELAAARARSGDIVLL 426


>gi|268608183|ref|ZP_06141910.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ruminococcus
           flavefaciens FD-1]
          Length = 446

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 134/378 (35%), Gaps = 42/378 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + I+ +TGT GKS+V S +  I   SG  +   G    I     D          +   L
Sbjct: 111 DQIIGITGTKGKSTVTSLIYHILHESGRDTRIAG---NIGIPVFDIAEGVNDDTIVVCEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          S H L+   +         F NL  +H+D++ T + Y+NAK  ++
Sbjct: 168 ---------------SCHQLEYMTVS---PAKAVFLNLYEEHLDHYGTMENYYNAKKNIY 209

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               P ++  I       SK V     +    V           +K      +  ++ I 
Sbjct: 210 LHQNPYDTLWIN------SKLVTDDIPSVTVTVSDKFNNADVFIIKSKVYDSDDGELEIP 263

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V+         L G    YN  +A  +C  + +      + L     +P R E VGT  +
Sbjct: 264 VK------KIKLLGSHNYYNIAIAWDVCRNL-VSRNDFNKALMSFDPLPHRLEPVGT-FK 315

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G   Y D    S +    ++ ++++    +  +   G DR     P++    L+ + + I
Sbjct: 316 GISWYDDSI--STACATAIEALKSVPD--VETILIGGMDRGIDYMPLVDY--LNKSTVNI 369

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +  +         I++E            +  +A++ A E+  +     V      +  I
Sbjct: 370 ICMEASGRRVYSLIKSEQFSAPERVHYVEHLEDAVKLASEITPEGKS-CVMSPAAASYGI 428

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E++  V   ++R +
Sbjct: 429 FKNFEERGDVFQQLVRSL 446


>gi|312132485|ref|YP_003999824.1| murc [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689505|ref|YP_004209239.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|311773413|gb|ADQ02901.1| MurC [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460841|dbj|BAJ71461.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 512

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 123/428 (28%), Gaps = 65/428 (15%)

Query: 82  FSATIRSNTPILVVDNTR-----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S+ I+ + P +V  +           + A  + GK     + V G  GK++ +S +  I
Sbjct: 90  YSSAIKPDNPEIVAAHAAGKRIVHRSDILALLMNGK---RAVTVAGAHGKTTTSSMLSHI 146

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G       P+  I  F Q      P    L    +      V        S     
Sbjct: 147 LVNAGAD-----PSYAIGGFIQG-----PDGTTLDGGHAGKGDILVAEADESDGSFA--- 193

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN   DH+D++  +  Y  A               II  DD     V
Sbjct: 194 ----KYHPTIAIITNCEADHLDHYGDEAHYRAA---FVAHAGRATGHVIISIDDPDGLAV 246

Query: 257 MKRAH-NAGCRVLSVGYQGK------------FIHLKKVCAIHNKQQVTISVEG------ 297
           ++    +     ++ G   +            +I  +   A    +Q+T+ +        
Sbjct: 247 LEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGVEQLTLHLPAAVTAGE 306

Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG     NA  A    + +G+  A              RF+  G   +  
Sbjct: 307 PVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAANAAGTFLGAARRFQVRGMVKQ-V 365

Query: 357 RIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +  +L    R      I V+F                 +L  AD  I+
Sbjct: 366 TVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAKSLAKADDVII 425

Query: 416 TDDNPRSED--------PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
           T   P  E         P  I  +   G+             +   A +      +  DV
Sbjct: 426 TGIFPAREKQADFPDISPSTIV-DAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAHHGDV 484

Query: 462 LVVAGKGH 469
           +   G G 
Sbjct: 485 IFTVGAGD 492


>gi|184155049|ref|YP_001843389.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum IFO 3956]
 gi|226711916|sp|B2GB77|MURD_LACF3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|183226393|dbj|BAG26909.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum IFO 3956]
          Length = 458

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 151/390 (38%), Gaps = 49/390 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y     +A ++  TPI+    T   L       Y     ++++VTG++GK++  + ++Q
Sbjct: 83  PYDTPLVAAFVKKGTPII----TELELG------YQVFAGHLISVTGSNGKTTTTTLIEQ 132

Query: 136 ICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +   +  +  ++     I  SF++      P    +                 EASS  L
Sbjct: 133 M--VAMGNPHRVEYAGNIGVSFSKVAEELGPDDTIVT----------------EASSFQL 174

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   +      TN+  +H+DYH+T+Q Y +AK+ +      K+   +I  D    +
Sbjct: 175 LGAPTY--RPHIAVITNIFANHLDYHKTRQNYIDAKLGI-TRNQTKDDYLVINWDKEEWQ 231

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++ KR  NA     S   + +    +K   ++ +Q+  ++ +         L G   V N
Sbjct: 232 KLAKR-TNATVVPFSRLAKSQEGAYQKGGDLYWRQERIMAAKD------VVLIGPQNVEN 284

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A       G+ +  ++  L     V  R ++V  +  G R Y D    S  +E    
Sbjct: 285 ALAAIAAAKLSGVANEAIVRVLTTFTGVRHRLQYV-LDYEGRRFYNDSK--STDIEATEV 341

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++       +++   G DR      ++      +  + +  +    S+D  K   E   
Sbjct: 342 ALQGFEQP--VILLAGGLDRGYTFERLVPYFREHVKALIVFGE----SKDKMKAAGE-QA 394

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G+   +E  + + A+  A  +    DV+++
Sbjct: 395 GVKTIVESTDAVTAVPEAWRLSEPGDVILL 424


>gi|126695359|ref|YP_001090245.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542402|gb|ABO16644.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 448

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 129/418 (30%), Gaps = 59/418 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VVSSA   ++   +       L + +  + L++             LAV G+ GK+S +
Sbjct: 59  FVVSSAIKPENEEFSYCRENN-LSIKHRSEILAMLMRTYTA------LAVAGSHGKTSTS 111

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +F+  I +           T   SS          S  +L      ++    +  ++   
Sbjct: 112 TFLSTILELC---------TRNSSSITGGIIPIYNSNCHLDNTKYLVAEVDESDGTINKY 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       K   G   N+  DH D+        +     F+         ++  D 
Sbjct: 163 ------------KSDIGIINNIDFDHCDHFSNLNEVIST----FKSFAKNSKKLLLNFDC 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDF--DFLFPL 306
             S+       N                   +  I    + TI    E  +F      P+
Sbjct: 207 ETSR-------NNFYSNWKWSNSTAKNVTYAIIPIEINSKYTIGKYYENGNFISSLNIPI 259

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + N   A      IG+D   + ++++ L +   RFEF G       +Y DYAH  
Sbjct: 260 PGLHNLSNITAAIAASRMIGVDFIEIKKNIKYLKLPKKRFEFRGQLDE-RSLYDDYAHHP 318

Query: 367 NSLEMILKNIR---------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           N ++  +K  R              R+I +F         +        L  AD+  VT 
Sbjct: 319 NEIKETIKLGRLLIQQNHNKECQKSRLIAIFQPHRYSRVKQFTKEFAEELSKADVIYVTS 378

Query: 418 DNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E  E       I   I           N  E  +   E+  K D+++  G G 
Sbjct: 379 IYGAGEGNEDRITSKIITDLIYKKNKNVSYINNYYEVTKNFYELTQKGDLILNMGAGD 436


>gi|186477373|ref|YP_001858843.1| UDP-N-acetylmuramate [Burkholderia phymatum STM815]
 gi|184193832|gb|ACC71797.1| UDP-N-acetylmuramate [Burkholderia phymatum STM815]
          Length = 469

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 120/363 (33%), Gaps = 34/363 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++  S +  + + +G++   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTTSMLTWLLEDAGMNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +     V+  A      V   G +G +  L     +   ++  + 
Sbjct: 208 VRTVPGIGRVVSNGREVALDRVL--ARGCWSEVERFGVEGGWQALPAEDGVAVDERFAVY 265

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+    + + + GE    NA+ A      IG+  A   + L     V  R E  G + 
Sbjct: 266 HNGERVGVVDWQVQGEHNRMNAIAAIAAARHIGVPPAQAAKSLSTFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   +++  +  +RT    +   I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIQTTVAGLRTRIGRTNTRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              +     P  +D       +  A +      F E  + ++A+   +      D ++V 
Sbjct: 385 ADLVFGYGAPSGKDALGWNLAEALAPMGDKAQAFNEIDSLVKAV---VAAAQPGDQVLVM 441

Query: 466 GKG 468
             G
Sbjct: 442 SNG 444


>gi|326333495|ref|ZP_08199736.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
 gi|325948695|gb|EGD40794.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
          Length = 488

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 127/387 (32%), Gaps = 70/387 (18%)

Query: 104 LFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
             A RL    +    LAVTGT+GK++    +  I + +GL S  +G              
Sbjct: 120 ELAWRLRDPDNAAPWLAVTGTNGKTTTVQMLDNILRTAGLRSVAVGNVG----------- 168

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                  L    + +  +     +VE SS  L  H    +   A    N+  DH+D++ +
Sbjct: 169 -------LPIVEAVMDPEPYDVFAVELSSFQL--HYTSSMAAEAAVVLNIAEDHLDWYPS 219

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y   K R++E +  + +     AD+A    V +     G R +        +    V
Sbjct: 220 MEEYAADKGRVYEGV--ERACVYNVADEATMHLVEEADVVEGARAIGFTLGTPAVGQVGV 277

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPG-----EFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                  +  I         L  +          V NAL AA L  A G+  A V + L+
Sbjct: 278 VEDILVDRAFIEERQTSAAELCQISDLASSAPHYVQNALAAAALARAHGVSQAAVRDGLK 337

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN---IRTITSG------------ 382
                  R E V        +    A   ++ +  L+    +  I  G            
Sbjct: 338 SFRPDGHRIEVVAEVGGVTWVDDSKATNPHAAQASLQAYDPVIWIAGGLAKGARFDDLVA 397

Query: 383 ----RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
               R+  V   G DRD     I   +A    D+ IV  D+P  E               
Sbjct: 398 SIHERLRAVILIGQDRDV----IASALAAHAGDLEIVELDDPDGEAAL------------ 441

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   EA+  A  +    D +++A
Sbjct: 442 -------AEAVEIAAALAKPGDTVLLA 461


>gi|312880220|ref|ZP_07740020.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
 gi|310783511|gb|EFQ23909.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
          Length = 462

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 132/356 (37%), Gaps = 46/356 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           ++L VTG++GK++  S +  + +  G+     G                         L+
Sbjct: 110 SLLGVTGSNGKTTTTSLIGHLLREEGVRVSVAGNIGN--------------------PLA 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +    V  E SS  L   R   ++      TNL  DHID+H + +AY +AK  L  
Sbjct: 150 SAVREEAEWVVAELSSFQLHWAR--RLRCSLAVVTNLAPDHIDWHGSYEAYVDAKANLVR 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L P    AI+       +  +         +     +        V  I ++++  +S 
Sbjct: 208 ALDPTTGMAIV------QRSELPLLPPVSQTIPLSWTEDGEGEEGGVTLIRSRREALLSF 261

Query: 296 EG----KDFDFL-FPLPGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFV 349
            G    + F F    L G+  + NA +AA     +  D    V E L +    P R + V
Sbjct: 262 PGLGKRRLFSFDALSLLGDHNLENAAMAATATTLVLKDAPKHVEEALTRFVAPPHRCQLV 321

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                G   +VD +  +N +   +  + ++   ++I++ G G     G    + K   + 
Sbjct: 322 --RELGKVRFVDDSKGTN-VAATMTALTSLPGTKVILLGGQGKGESYGS---LAKAVTEW 375

Query: 410 ADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A  A++       E+ E+I   +   G   +    +  EA+  A +     D +++
Sbjct: 376 ARFAVL-----FGEEGERIGKALDDAGYHRWSLVRSLNEAVPLAYDKAEAGDSVLL 426


>gi|300821335|ref|ZP_07101483.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 119-7]
 gi|300526224|gb|EFK47293.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 119-7]
          Length = 440

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 86  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 129

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 130 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 189

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 190 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 245

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 246 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 303

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 304 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 363

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +      +  P ++       +      G+        ++     D ++V   G
Sbjct: 364 ADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 419


>gi|24375706|ref|NP_719749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
 gi|30316031|sp|Q8E9P6|MURD_SHEON RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24350640|gb|AAN57193.1|AE015855_4 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
          Length = 439

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 110/337 (32%), Gaps = 47/337 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   ++         +  I V+ +   F    A R        ++ +TG++GK+
Sbjct: 67  ATQIIISPGIAMNTPEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKT 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  +      +
Sbjct: 122 TVTTLVGEMLREAGIAVAVGGNIGIPA--------------------LDLLKENADIFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +        I  
Sbjct: 162 ELSSFQLE--TTHSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ----SRSIIFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDA +        N      S G    +G    +      H   ++    E        
Sbjct: 216 RDDALTIPTEPMNQN------SFGLAPPEGDEWGICDSKIYHGHSEIMPITE-------V 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  L  A+G+D  ++         +  R E VG       +    A 
Sbjct: 263 SLIGSHNHANLLAAMALVYAVGVDKQVMANVARTFTGLSHRCEVVGVKGGVTYVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              +    L  +       I++  G G   D      
Sbjct: 323 NVGATVAALDGLSDHLGDIILIAGGDGKGADFSPLEE 359


>gi|260663593|ref|ZP_05864482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum 28-3-CHN]
 gi|260551819|gb|EEX24934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum 28-3-CHN]
          Length = 458

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 151/390 (38%), Gaps = 49/390 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y     +A ++  TPI+    T   L       Y     ++++VTG++GK++  + ++Q
Sbjct: 83  PYDTPLVAAFVKKGTPII----TELELG------YQVFAGHLISVTGSNGKTTTTTLIEQ 132

Query: 136 ICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +   +  +  ++     I  SF++      P    +                 EASS  L
Sbjct: 133 M--VAMGNPHRVEYAGNIGVSFSKVAEELGPDDTIVT----------------EASSFQL 174

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   +      TN+  +H+DYH+T+Q Y +AK+ +      K+   +I  D    +
Sbjct: 175 LGAPTY--RPHIAVITNIFANHLDYHKTRQNYIDAKLGI-TRNQTKDDYLVINWDKEEWQ 231

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++ KR  NA     S   + +    +K   ++ +Q+  ++ +         L G   V N
Sbjct: 232 KLAKR-TNATVVPFSRLAKSQEGAYQKGGDLYWRQERIMAAKD------VVLIGPQNVEN 284

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A       G+ +  ++  L     V  R ++V  +  G R Y D    S  +E    
Sbjct: 285 ALAAIAAAKLSGVTNEAIVRVLTTFTGVRHRLQYV-LDYEGRRFYNDSK--STDIEATEV 341

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++       +++   G DR      ++      +  + +  +    S+D  K   E   
Sbjct: 342 ALQGFEQP--VILLAGGLDRGYTFERLVPYFREHVKALIVFGE----SKDKMKAAGE-QA 394

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G+   +E  + + A+  A  +    DV+++
Sbjct: 395 GVKTIVESTDAVTAVPEAWRLSEPGDVILL 424


>gi|293611410|ref|ZP_06693706.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826282|gb|EFF84651.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 457

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 112/361 (31%), Gaps = 27/361 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        +  +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFCVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALSAELISIDGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGNVVGEVKWSMTGQHSVANALATIVAAQHVGVTLEQACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 324 T-VNGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGK 467
           LAD  I     P   D +     +I       +   +  E I+  +    + D +V+   
Sbjct: 383 LADEVI--WYQPEGLDWD--LQPVIEAASNHAQVSRSLDEIIKRIVNEAGEGDAVVIMSN 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|302185271|ref|ZP_07261944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae 642]
          Length = 448

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 122/352 (34%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  +    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDIELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLRQFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 DGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSGLRAPVAKHCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +P  +       A+  + ++  + D +++
Sbjct: 376 VVL------GRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLAQRGDAVLL 420


>gi|229496580|ref|ZP_04390294.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316477|gb|EEN82396.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas endodontalis
           ATCC 35406]
          Length = 464

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 128/410 (31%), Gaps = 48/410 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V + A            +    VV  +        + +       +LAV GT GK++ +
Sbjct: 76  VVYTPAVPDHLGELQYFRHEGYRVVKRSEA----LGAAVQDDL---LLAVAGTHGKTTTS 128

Query: 131 SFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S +  +   S   ++  +G  S  +++  +  L + SP  + +A  Y  S          
Sbjct: 129 SLLAHLLHHSRVKTNAFLGGIS--ANYQSNLLLDSVSPYVVVEADEYDRSF--------- 177

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       +       T++  DH+D + T + Y     +   ++ P  +       
Sbjct: 178 ----------LHLYPHIAIVTSMDPDHLDIYGTPEGYREGFAQFIRQVKPGGTLIYKKGI 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPL 306
            +      +      C   ++G +    +   +     +         +  +F      +
Sbjct: 228 TSTP----ETQEEVKCYTYAMG-ETADSYSDNIHFDEGRLFFDWHFPERGIEFKNLELGV 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           P    V NA  A      +G+    +   L     +  RFE +  ++    +  DYAH  
Sbjct: 283 PITINVENATAALTAACLLGVSETELRSALASFRGIHRRFERL-LDTPNRVLIDDYAHHP 341

Query: 367 NSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             L   + ++R +     I  +F                  L   D  I+    P  E+P
Sbjct: 342 EELRASIASVRALYPHDKITGIFQPHLYSRTQDFYPEFAEVLSELDEVILLPIYPAREEP 401

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                   I  ++       I    R E I    E  N   V++  G G+
Sbjct: 402 IPGVSSSLILDKVSTAEKSLIP---REELIERLRERENLNRVILTLGAGN 448


>gi|228933511|ref|ZP_04096364.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826240|gb|EEM72020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 171

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 20/169 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVINGEGLH-ESFHHLEIHGVRIDSKNMKEGNLFVPIIRMK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y       T     PI+ VD T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYG------TPPKGVPIIFVDETLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQIC-------QRSGLSSFQIGPTSTISSFAQDNRL 162
           TG++GK++V   ++ I        +  G  + QIG   TI    ++   
Sbjct: 117 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRNTEF 165


>gi|166363698|ref|YP_001655971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Microcystis
           aeruginosa NIES-843]
 gi|189082911|sp|B0JRM9|MURD_MICAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166086071|dbj|BAG00779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcystis
           aeruginosa NIES-843]
          Length = 449

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 131/398 (32%), Gaps = 43/398 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVA 130
            S   +L   S  +  + PIL+    +    +               L +TGT+GK++  
Sbjct: 62  ASDLPNLIVVSPGVPWDAPILITAREKGIDTIGELELAWRYLQSSPWLGITGTNGKTTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    I Q++GL++   G                        A   L+ +   +  + A 
Sbjct: 122 ALCAAIFQKAGLNAPSCGNIG--------------------YAACELALKADKYDWIIAE 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +    G +T    DH+  HQT + Y+  K  L    L +    I+  DD
Sbjct: 162 ISSYQIESSRDLSPKIGIWTTFTPDHLSRHQTLENYYQIKASL----LQRSDRQILNGDD 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPG 308
            Y +++     +   +      QGK   L         Q   I   G+      L  + G
Sbjct: 218 PYLRQI---GVSQWQQAYWTSVQGKAALLGDPSRGVYLQDNWIVAFGELIAPVNLLKMVG 274

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N L+A       GI+   + E +     V  R E+V T      I    A   ++
Sbjct: 275 SHNQQNLLMAVAAARLAGIEKKAITEAIATFPGVAHRLEYVCTYKGLDFINDSKATNYDA 334

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             + L+++ +       ++   G  +    R  + +I   +A + ++ D           
Sbjct: 335 AAVGLQSVPSPA-----ILIAGGEAKAGDDRAWIAEIKAKVATVLLIGDAAADFA----- 384

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEM--LNKQDVLVV 464
           R     G   +        A++ A E+    +  V+++
Sbjct: 385 RRLQSAGYQDYECVETMDRAVQRAAELGPAKEAKVVLL 422


>gi|167752297|ref|ZP_02424424.1| hypothetical protein ALIPUT_00541 [Alistipes putredinis DSM 17216]
 gi|167660538|gb|EDS04668.1| hypothetical protein ALIPUT_00541 [Alistipes putredinis DSM 17216]
          Length = 489

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 120/411 (29%), Gaps = 50/411 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V + A                 +V  +     +      GK    ++AV GT GK++  
Sbjct: 101 VVYTPAVPADHTELRWFEEHGFEIVKRS----QMLGYLSQGKF---VMAVAGTHGKTTTT 153

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V  +             T   S+F         S + L +             S    
Sbjct: 154 TLVAWL---------NHRVTGGGSAFLGGISRNFSSNLVLGRGRRLAVEADEFDRSFL-- 202

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +       T+   DH+D + T +A   A    F   + +    ++    
Sbjct: 203 ----------RLWPDVAVVTSADADHLDIYGTHEALREA-FSQFVGQIREGGALVV---- 247

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLP 307
              + V  +  N G RV    Y        +   +          ++  G        +P
Sbjct: 248 --KRGVDLKIGNPGIRVYRYSYDEPCDFYARNVTLLEGGHYRYDLVTPGGVVEGCTLGIP 305

Query: 308 GEFQVYNALVAAGLCIAIG------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           G   + NA+ A              +D+  + E L     V  RFEF     R      D
Sbjct: 306 GWVNIENAVAAVAALWCASERDGEPLDAERLREALASFEGVKRRFEFYVNTPRQVY-MDD 364

Query: 362 YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH    L   + +++ +  G R+  +F                 AL  AD  ++    P
Sbjct: 365 YAHHPRELAAAITSVKKMFPGRRLTALFQPHLYTRTRDFYREFAEALSHADRVVLLPIYP 424

Query: 421 RSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E+  P      I   +       +R E       M    DV+V  G G+
Sbjct: 425 AREEPIPGVESEMIGRLLTVPWTICDRAELAEKVAAM--DTDVVVSFGAGN 473


>gi|113971900|ref|YP_735693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-4]
 gi|113886584|gb|ABI40636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-4]
          Length = 439

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 127/379 (33%), Gaps = 60/379 (15%)

Query: 30  INEVSSDSRHIQAG-----WIF--VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           I  +  DSR    G       F  V ++    D   ++ QA       I++S   ++   
Sbjct: 28  ITPLVMDSRRQPPGADTLASAFPEVQLIAGGFDCR-YLVQAKQ-----IIISPGIAIDTP 81

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 +  I V+ +   F    A R        ++ +TG++GKS+V + V ++ + +G+
Sbjct: 82  EVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKSTVTTLVGEMLREAGM 136

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G     +                      L ++      +E SS  L+      +
Sbjct: 137 AVAVGGNIGIPA--------------------LDLLTENADIFVLELSSFQLE--TTHSL 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             +A +  N+  DH+D +    AY  AK+RL+ +        I   DDA +        N
Sbjct: 175 NCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ----SRSIIFNRDDALTIPTEPMNQN 230

Query: 263 AGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 S G    +G    +      H   ++    E         L G     N L A 
Sbjct: 231 ------SFGLAPPEGDEWGICDSKIYHGHSEIMPITE-------VSLIGSHNHANLLAAM 277

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A+G+D  ++ +       +  R E VG  +    +    A    +    L  +   
Sbjct: 278 ALVYAVGVDKQVMAKVARTFTGLSHRCEVVGVKAGVTYVNDSKATNVGATVAALDGLSDH 337

Query: 380 TSGRIIVVFGCGGDRDQGK 398
               I++  G G   D   
Sbjct: 338 LGDIILIAGGDGKGADFSP 356


>gi|209524823|ref|ZP_03273369.1| cyanophycin synthetase [Arthrospira maxima CS-328]
 gi|209494702|gb|EDZ95011.1| cyanophycin synthetase [Arthrospira maxima CS-328]
          Length = 895

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 127/362 (35%), Gaps = 34/362 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D             A   L    V    +E++ 
Sbjct: 505 LLAHIMKQTGKV---VGYTTTDGTYIGDYMAEPGDNTGPQSAHLILCDPTVEVAVLESAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           AK++ +  E +     AI+ ADD
Sbjct: 562 GGILRSGLGFDTCDIGVVLNVAADHLGLGDIDTIEQMAKVKSVVAEAVSDRGYAILNADD 621

Query: 251 AYSKEVMKRAHNAGCR---------VLSVGYQGKFIHLKKVCAIHN-KQQVTISVEG-KD 299
                + +R                +L     G    + +   +   K   T+ +E   +
Sbjct: 622 PLVAAMSERVKAQVAYFSMNPDNEIILRHTEAGGLAAVYENGYLSILKGDWTLRIEQAVN 681

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRG 355
                     F + NAL A     A G+    +   L          PGR       S  
Sbjct: 682 VPLTMGGMAPFMIANALAACAAAFAQGVKIEHIRTALATFIASADQTPGRMNLFNMGS-- 739

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +DYAH   S E +   +      RI VV G G  RD+    + GK++  + D  IV
Sbjct: 740 YHALIDYAHNPASYEALSGFVNNWPGPRIGVVGGPGDRRDEDFVTL-GKLSAKMFDRIIV 798

Query: 416 TDDN-----PRSEDPEKI---RAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLV 463
            +D+     PR +    I     E++  +P    K     N  +AI  A++   K+ ++V
Sbjct: 799 KEDDDTRGRPRGDAAVLITQGIEEVLSPVPDPRVKHETILNETDAINLALDQAPKEALVV 858

Query: 464 VA 465
           + 
Sbjct: 859 IL 860


>gi|260584179|ref|ZP_05851927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
 gi|260158805|gb|EEW93873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
          Length = 453

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 131/349 (37%), Gaps = 37/349 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TG++GK++  +    + + S                         +   +   LS 
Sbjct: 114 IIGITGSNGKTTTTTLSSLMLKES------------------FPERDVYAAGNIGIPLSQ 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+ Q        +         +D  K       N+   H+DYH +++ Y  AK++L + 
Sbjct: 156 LAEQSTKEDIYVSELSSFQLMGIDQFKPKIACIVNIFSAHLDYHGSREEYIKAKLQLTKN 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              ++   +  AD      +++   NA     S     +F    +   I    +  I V 
Sbjct: 216 QT-EDDYLVYNADYPELITLIEEHTNATLVPFSRKNSLEFGASVEGDYICFNGEKVIPVS 274

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V N L A  +    G  +  + + ++  H V  R +FV   ++  
Sbjct: 275 ------TIQVPGTQNVENVLAAVAIAKLAGATNEGIKKAVQNFHGVKHRTQFVKEVNK-- 326

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           R + + +  +N +      +R+ T+  +I++   G DR  G   ++        D+  V+
Sbjct: 327 RRFYNDSKATNII-ATQTALRSFTNQSVILI-AGGLDRGNGFDELI-------PDLTAVS 377

Query: 417 DDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 E  EK++ A  + GIP         EA + A E+  + D++++
Sbjct: 378 GIVLYGETKEKLQEAAKVAGIPVIEVVNTLEEATKKAYEISKENDIILL 426


>gi|157369004|ref|YP_001476993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Serratia
           proteamaculans 568]
 gi|157320768|gb|ABV39865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia
           proteamaculans 568]
          Length = 439

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 144/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALATPALSAAADAGVEIVGDVELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G +    G                        ALS L  +      +
Sbjct: 118 TVTTLVGEMAKAAGWAVGVGGNIGL-------------------PALSLLRQE-CQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTFSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYEN----AEVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL +           + V G+        
Sbjct: 212 NADDALTMPV----RGADKRCISFGADVGDYHLNRQLGETW-----LRVRGEKILNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+ I  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLTGRHNYTNALAALALADAVNIPRASSLKALTTFTGLAHRFQLAWEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D    E 
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLAQYLQGDNVRLYCFGRD---GEQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A++     +   D++++
Sbjct: 377 LAQLRPEVA------TLTETMEQAMQAIAGRVQSDDMVLL 410


>gi|324019282|gb|EGB88501.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 117-3]
          Length = 445

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 135 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 195 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 250

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 251 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 309 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 368

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +      +  P ++       +      G+        ++     D ++V   G
Sbjct: 369 ADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 424


>gi|229918549|ref|YP_002887195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Exiguobacterium sp. AT1b]
 gi|229469978|gb|ACQ71750.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Exiguobacterium sp.
           AT1b]
          Length = 445

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 131/402 (32%), Gaps = 59/402 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-------LSLFASRLYGKHPENILAVTG 122
           A++  +   +++    I    P+L    +R         L+  A+          +A+TG
Sbjct: 64  ALLNETEVIVKNP--GIPYQIPLLQEAMSRHIPIYTEVELAYLATE------AEFVAITG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++  + V ++ +         G    I   A +      +   +   LS     G 
Sbjct: 116 SNGKTTTTTLVYELLKGGERPVHLAG---NIGFPAIEVASQAKAGDLIVIELSSFQLMG- 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                           ++     + +  NL   H+DYH    AY +AK  LF  +   + 
Sbjct: 172 ----------------IESFHPRSAALLNLSEAHLDYHGDFDAYADAKGNLFRRMTNADQ 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   D     EVMKR             +G         A      VT+  E      
Sbjct: 216 IVVKVTD----PEVMKRVPGEIEPTTFSFDRGD--------ASVVDGWVTVRGEKIMPVN 263

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G   V N L A  L     I    +   L     V  R E +G +  G  +Y D 
Sbjct: 264 ELALGGAHNVENVLAALLLVEPFAIPRTHIERVLRNFGGVAHRTESLG-DVLGRAVYNDS 322

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+N     +     +      +V+ CGG         +     ++  +    +   R 
Sbjct: 323 KATNN-----VAAEAALRGFDAPIVWLCGGLERGADLSSLAPALSNVKAVVAYGETKERF 377

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++  + R      IP F  +    +A+  A E     DV+++
Sbjct: 378 KELGESRQ-----IPSFTVET-LADAVPLAFEQSETGDVILL 413


>gi|81428252|ref|YP_395252.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|109892709|sp|Q38XY8|MURC_LACSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78609894|emb|CAI54941.1| UDP-N-acetylmuranoyl-L-alanine synthetase [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 444

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 101/349 (28%), Gaps = 45/349 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +A+              + VV    +FL               + V G  GK+S +
Sbjct: 68  VIAGNAFQDDQIEIKTALEMGLPVV-RYHQFLGELLKNY------TSIGVAGAHGKTSTS 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +SF +G   T             +  Y    L+Y              
Sbjct: 121 GLLAHVLSGVAKTSFLVG-DGTGKGIKDAQFFAFEADEYRRHFLAY-------------- 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY+   +  F+A      E    +     + DD
Sbjct: 166 ------------SPDYLIMTNIDFDHPDYYTGIEDVFDA---FQSEAYKVQKGIFAWGDD 210

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
              +++   A        S          + +       +       ++   +  PL GE
Sbjct: 211 PELRKLKSNAPIYYYGTKS----NDDFQARNIQRTVEGSEFDAYYHDENIGHYHVPLYGE 266

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V N+L    +     ID   V+  L     V  RF           I  DYAH  + +
Sbjct: 267 HNVLNSLAVIAVSYLEKIDGREVVRELADFKGVKRRFTEKKVAD--VTIIDDYAHHPSEI 324

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +  L   R      +I+ VF                 +L+LAD   +TD
Sbjct: 325 KATLDAARQKYPDRQIVAVFQPHTFTRTIALMDDFAASLNLADEVFLTD 373


>gi|309792364|ref|ZP_07686832.1| UDP-N-acetylmuramate/alanine ligase [Oscillochloris trichoides DG6]
 gi|308225585|gb|EFO79345.1| UDP-N-acetylmuramate/alanine ligase [Oscillochloris trichoides DG6]
          Length = 469

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 130/415 (31%), Gaps = 55/415 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
              +  A ++   PIL  D+                   ++AV G+ GK++ ++ V    
Sbjct: 72  DHPELVAALKLGIPILKRDDL---------WRVWSQQRPVVAVAGSHGKTTTSAMVALAL 122

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +  GL+   +   + +     +     P+   + +A  Y  +                  
Sbjct: 123 RGGGLNPGFL-IGAEVPDLGGNATWGDPAAPLVIEADEYDRAF----------------- 164

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV- 256
               +       TN+  DH D + + +AY  A    F + +      ++ +D  +  ++ 
Sbjct: 165 --LSLTPALAVITNVEWDHPDIYPSAEAYTAA-FTSFAQQVGGPRRLVLGSDGPHLSDLG 221

Query: 257 ------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---------EGKDFD 301
                            +S            V  I     V+  +         + +   
Sbjct: 222 DLEPVLYGIEERLATDPVSCRLAPFDWTASGVTGI-PGGGVSFDLWRFDRQRMGQRRMGV 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G   V NAL A  +   +G+D    +  L        RFE  G    G  +  D
Sbjct: 281 LELAVAGAHNVRNALAALAVAALLGVDMQGAVAALSSFRGSARRFELKGEAG-GVVVVDD 339

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM-GKIALDLADIAIVTDDNP 420
           Y H  + ++  L   R     R IV +       + +  +     A   AD+ +V D   
Sbjct: 340 YGHHPSEVQATLAAARMRYPARRIVAYLQPHTFSRTEALLDAWPEACRDADLVLVGDVYA 399

Query: 421 RSE--DPEKIRAEIIHGIPGFIEKG---NRIEAIRTA-IEMLNKQDVLVVAGKGH 469
             E  D   +   +   I     +      +EA   A I ++   D+++  G G 
Sbjct: 400 AREEGDVAALAQRLTERISAAGIEARYSGNLEASSAALIRLVQAGDLVLTLGAGD 454


>gi|218551527|ref|YP_002385319.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
 gi|218359069|emb|CAQ91730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
 gi|324112144|gb|EGC06122.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           fergusonii B253]
 gi|325499791|gb|EGC97650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia fergusonii
           ECD227]
          Length = 457

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMTTWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|88856510|ref|ZP_01131167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
 gi|88814164|gb|EAR24029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
          Length = 508

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 143/421 (33%), Gaps = 57/421 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRK---FLS---LFASRLYGKH--PENILAVT 121
           A + + A  +   S     + P+L  + +RK    L      A RL  K   P   +A+T
Sbjct: 75  AALSAHAPDIVIVSPGYPQDHPLL--EWSRKSHVALWTEIELAWRLRDKTGTPAEWIAIT 132

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GK++ A     I   +G  +  +G    I     D         +L   LS      
Sbjct: 133 GTNGKTTTAQLAAHILSTAGFRAGAVG---NIGIPVLDAIRYPDGFDFLVVELSSFQ--- 186

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                     HG+ +  +  I  +A    N+  DH+D+H ++ AY NAK  ++       
Sbjct: 187 ---------LHGMPRTGVGAISPLASVCLNIADDHLDWHGSRAAYANAKATVYAN---TR 234

Query: 242 SPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVE 296
             A+       +  +++ A     CR +  G        F  +  + A         +V 
Sbjct: 235 IAAVYNRAVPSTLAMVEDADVIEGCRAIGFGLDTPGPSDFGIVSDLLADRAFGDDRHNVA 294

Query: 297 GKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            + F         L     + N L A+ L  A G+    +   +        R + V  +
Sbjct: 295 DELFTLDELRHNGLSAPHMIANVLAASALTRAAGVSIEALRAGVASFETDAHRNQLVLLS 354

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                +    A  S++    L  +  +    + +V   G  +     P++ + A  L   
Sbjct: 355 GGVSWVNDSKATNSHAASASLSAVDPV----VWIV--GGLLKGVDVAPLVQQHARRLKAA 408

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIE----AIRTAIEMLNKQDVLVV 464
            ++ +D         I A      P      ++  +       A+  A  +  + D +++
Sbjct: 409 IVIGNDR------LAILAAFERHAPQIPVFEVDSTDTKHVMPRAVEMAHGIATEGDTVLL 462

Query: 465 A 465
           A
Sbjct: 463 A 463


>gi|218697983|ref|YP_002405650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 55989]
 gi|218354715|emb|CAV01756.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 55989]
          Length = 457

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +      +  P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|188578475|ref|YP_001915404.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522927|gb|ACD60872.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 455

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 142/416 (34%), Gaps = 36/416 (8%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + +   A  +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 52  ALAQGYAPSNISPDATDVVVGNALSRGNPAVEAVLDAGRRYTSGAQWLAEQVLPGRDTLA 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A D          L +   ++  
Sbjct: 112 VAGTHGKTTTTTILSYLLEAAGRAPGFL-----IGGVAAD----FGVSARLGQGREFVVE 162

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 163 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA+  EV+  A      V   G+        ++ A        +    + 
Sbjct: 217 ARGRLIVNGEDAHLAEVL--AMGCWTSVEQFGFDASLDWSARLIAADGSAFAVLHRGAEV 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               + L G   V N L A     A+G+D A V+  L     V  R E +G ++RG  +Y
Sbjct: 275 GHVQWLLLGRHNVLNGLAALAAVHAVGVDPATVMPALAHFQSVKRRLEVIG-SARGITVY 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       +VV                 +A  L  AD  +   
Sbjct: 334 DDFAHHPTAIATTLQGLRARVGAARVVVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL- 392

Query: 418 DNPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAI--RTAIEMLNKQDVLVVAGKG 468
              R E   D   I A++        +      AI  RT  E+    D +V    G
Sbjct: 393 --HRPELAWDAAPIIAQVRGEARVAQDV-----AILLRTLGEIAQPGDHVVFMSNG 441


>gi|121535920|ref|ZP_01667716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
           carboxydivorans Nor1]
 gi|121305491|gb|EAX46437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
           carboxydivorans Nor1]
          Length = 449

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 106/311 (34%), Gaps = 17/311 (5%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            H  V A         +   +    +  NL  DH+D H++   Y   K R+F    P + 
Sbjct: 154 EHGIVVAEISSFQLEGVVDFRPRIAAVLNLTPDHLDRHRSLDNYKAMKERIFRNQRPDD- 212

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  DD   +++ +RA +   + +    + +     ++             E      
Sbjct: 213 YLVLNYDDPLVRDMAERAPS---QAVFFSRKARLSTGARLEDETIVMCWEGKTEAICPVK 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G   + NAL A+ +    G D+  +   L     V  R E V    RG R Y D 
Sbjct: 270 EMKLFGAHNIENALAASCVAFLAGADAGAIGAVLRTFMGVEHRIEPV-AEIRGVRYYNDS 328

Query: 363 -AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    S    L+          I++   G D+       M      +  + ++ +   R
Sbjct: 329 KATNPESAIKALEAFDGH-----IILIAGGRDKKTDLTEFMELAKQKVDHLILLGEAKER 383

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                       HG+          +A+  A  +     V++++     +  +  N E++
Sbjct: 384 FYQAAA-----AHGVTNIHLVDKFEDAVTLAYRLARPPQVVLLS-PACASYDMFNNYEER 437

Query: 482 MSVDCDIIREI 492
             V  +++R++
Sbjct: 438 GRVFKELVRQL 448


>gi|330501922|ref|YP_004378791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
 gi|328916208|gb|AEB57039.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
          Length = 450

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 135/386 (34%), Gaps = 43/386 (11%)

Query: 82  FSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            S  +   TP LV    R   LS             I+A+TG++ KS+V + V ++   +
Sbjct: 77  VSPGLAVATPALVEAAARGVKLSGDIDLFARHAKAPIVAITGSNAKSTVTTLVGEMAAAA 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G      G   T +                      L +  V    +E SS  L+    D
Sbjct: 137 GKRVAVGGNLGTPA--------------------LDLLADDVELYVLELSSFQLE--TTD 174

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +     +  N+  DH+D +    AY  AK R+F          +I  DDA S+ ++   
Sbjct: 175 QLNAEVATCLNISEDHMDRYSGLPAYHLAKHRIFRG----ARQVVINRDDALSRPLIAD- 229

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                     G          +   + ++ +    +         + G     NAL A  
Sbjct: 230 ---QVTSWEFGLGKPDFKRFGLLEENGEKSLAFRFDALLPVSELKIRGAHNQSNALAALA 286

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L  A+G+    +L  L +   +P R ++VG   RGG  Y D +  +N +   L  I  + 
Sbjct: 287 LGHAVGLPMEAMLATLRQFAGLPHRCQWVGE--RGGVSYYDDSKATN-VGAALAAIEGLG 343

Query: 381 SGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +     +V+   G  +      +   +A     + ++  D           A ++     
Sbjct: 344 ADIAGKLVLIAGGDGKGADFSALKAPVARFCRAVVLLGRDAELLAAALGDAAPLVR---- 399

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   +  EA++ + E+    D +++
Sbjct: 400 -VTILD--EAVQRSSELAEAGDAVLL 422


>gi|160871628|ref|ZP_02061760.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
 gi|159120427|gb|EDP45765.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
          Length = 471

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 136/456 (29%), Gaps = 103/456 (22%)

Query: 55  DGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
            GH   +I       A+ IV SSA S  +       +  I VV        +   R    
Sbjct: 63  HGHHEKYIRD-----ADVIVYSSAVSCDNVEIQAARHALIPVVPRALMLAEIMRFRYS-- 115

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AV GT GK++  S V  +    GL      PT  I       R           
Sbjct: 116 -----IAVAGTHGKTTTTSLVASLLGEGGLD-----PTFVIGGKLNSTRTHARLGSGRY- 164

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++       + +                +K +    TN+ RDH+  +            
Sbjct: 165 LVAEADESDASFLY---------------LKPMIAIVTNIDRDHMGTYSGNFQQLKKSFL 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291
            F   LP    A++  DD + + ++    +    +L+ G+ +   I +        K   
Sbjct: 210 EFLWHLPFYGLAVLCCDDPFIRSIL---PDIMRPILTYGFSEDADIRITSFQQKEIKNYF 266

Query: 292 T-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +  + K  D +  LPGE    NAL A  +   +GI + ++ + L     V  RF+ +G
Sbjct: 267 RVLRPKKKPMDIILNLPGEHNALNALAAIAVASELGIKNDVICKALSHFSGVDRRFQVLG 326

Query: 351 ---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-------------------- 387
                     +  DY H    +   LK IR     R +V+                    
Sbjct: 327 KLTCKHGDALLIDDYGHHPREIAATLKAIRHAWPDRRLVMTYQPHRYTRTRDLFSDFVKI 386

Query: 388 ---------FGCGGDRD-----QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
                           +          ++  I L+     I  +D    E    I  EII
Sbjct: 387 LSQVDHLLLLNVYAAGEAVISGADSAALLKSIHLNKQINPIHIEDK---EKLMSILDEII 443

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                                     DVL++ G G 
Sbjct: 444 -----------------------QDGDVLLLQGAGD 456


>gi|148238364|ref|YP_001223751.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. WH 7803]
 gi|189082507|sp|A5GHN9|MURC_SYNPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147846903|emb|CAK22454.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. WH 7803]
          Length = 486

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 140/433 (32%), Gaps = 65/433 (15%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENI 117
           QA+ +      +  +  +   S+ I  + P LV    R+      S   + L  + P   
Sbjct: 69  QALDR------LDRSSPIVVISSAIPDHNPELVAARERQLEVWHRSDLLAALIDQQPS-- 120

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ G+ GK++ ++ V  +   +G       PT+ I            +           
Sbjct: 121 IAIAGSHGKTTTSTVVTTLLHGAGED-----PTAVIGGIVPCYDSNGHAGQGRLLVAEAD 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G                 L   +   G  TNL  DH D+++          R  +  
Sbjct: 176 ESDGS----------------LVKFRASLGVITNLELDHTDHYRDLDDLIATLQRFGDGC 219

Query: 238 LPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTIS 294
                  +   DD   S+     A  +  R  +V + G  + L   +  A   +Q   + 
Sbjct: 220 ----KRLLANQDDPILSEHFQADAWWSVQRSDNVDFAGLPVALEGDRTIADLYEQGTFV- 274

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     P+PG   + N + A   C   G+    ++ HL +L     RF++ G + +
Sbjct: 275 -----GQITLPMPGLHNLSNTIGALAACRMEGVPLEHLISHLSELKTPGRRFDYRG-DWQ 328

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT----------SGRIIVVFGCGGDRDQGKRPIMGK 404
           G +I  DYAH  + +   L     +             R++ VF         +      
Sbjct: 329 GRQIVDDYAHHPSEVAATLNMANLMVSSGRSPLPRSPQRLVAVFQPHRYSRTQEFQTEFA 388

Query: 405 IALDLADIAIVTDDNPRSEDPE-KIRAEIIHGI-------PGFIEKGNRIEAIRTAIEML 456
            AL  A++ ++       E     + +E +  +          +      E +    E  
Sbjct: 389 RALLSAELVLLAPIFAAGEAEMPGVNSEALASVMQELSTQQSVLVASTMDELVSLVKEHS 448

Query: 457 NKQDVLVVAGKGH 469
              D+++  G G 
Sbjct: 449 LPDDLVLAMGAGD 461


>gi|148244846|ref|YP_001219540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326673|dbj|BAF61816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 432

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 154/422 (36%), Gaps = 57/422 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           + +S   +  +          I +V +  +  S FA          ++ +TG++GKS+V 
Sbjct: 65  VFISPGIAQSETIVGWAMKKNIPIVSDI-ELFSRFAK-------APVIGITGSNGKSTVT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             + Q+   SG+     G                        AL  L+ + + +  +E S
Sbjct: 117 KLLTQMIADSGMLVAIGGNIG-------------------IPALDCLNEK-IEYYVLELS 156

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ LD      + LI G   N+  DH+D + + + Y ++K+ L++        +++  D+
Sbjct: 157 SYQLDYS--YHLNLITGVVLNITPDHLDRYSSFEYYIHSKLSLYQYC----QYSVVNLDE 210

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                ++ +  N     +++  +           +C +       +SV+         L 
Sbjct: 211 P----LIPKQTNVKYFGINIPKRANDFGTVTCHNICYLLKGNNTLMSVD------EVQLI 260

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE    N L A  L   I +  + +++ ++    +  R E+V         Y + +  +N
Sbjct: 261 GEHNTKNILAALALGDQIKLPISSMIQSIKNFKALEHRLEWVIKKQNID--YYNDSKATN 318

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++  I+     +   + IV+   G  + +    +   I   +  + ++       +   +
Sbjct: 319 AISTIIAIQTLMYKHQNIVLILGGIAKKEDYTLLFKFINKGITGVVLI------GQSTRQ 372

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
              EI      +       EA+  A  M++    +++   G  +  +  N E +  V  D
Sbjct: 373 FLQEINTNSIIYANTNTMQEAVNIARSMISNG--VILLSPGCASFDMFDNFEHRGRVFKD 430

Query: 488 II 489
            I
Sbjct: 431 CI 432


>gi|89891766|ref|ZP_01203269.1| UDP-N-acetylmuramate-alanine ligase [Flavobacteria bacterium BBFL7]
 gi|89516101|gb|EAS18765.1| UDP-N-acetylmuramate-alanine ligase [Flavobacteria bacterium BBFL7]
          Length = 455

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 126/375 (33%), Gaps = 51/375 (13%)

Query: 107 SRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           ++L G+  + +  LAV GT GK++ ++ +  +                   +  D ++T 
Sbjct: 103 AQLLGQISQTMTCLAVAGTHGKTTTSAILAHLL------------------YKSDVKVTA 144

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                L +  +     G   + VEA        +L          T +  DH+D +    
Sbjct: 145 FCGGILEEYNTNYLCSGTDVMVVEADEFDRSFMQLS---PDVAGITAMDADHLDIYGDVA 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            +       F  LL +    I+                     + VG +        +  
Sbjct: 202 TFEQT-FHDFAALL-ENKTLIVN-------------EQVIIDGIKVGLKQGKYQAINIVI 246

Query: 285 IHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   + V+   +  F   LPG+  + NAL+A  + I  G+    +   L     V 
Sbjct: 247 AGGAYHFDLRVDKAVYKGFCLQLPGKHNLSNALLALAMAIEYGVAIEALKLALVTFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIM 402
            RF +   N+    +  DYAH    +  + + +R +     ++ +F              
Sbjct: 307 RRFTY-RVNTAERVLIDDYAHHPTEVNAVHQAVREMYPQEKVLAIFQPHLFSRTKDFMEE 365

Query: 403 GKIALDLADIAIVTDDNPRSEDP-EKIRAEI-------IHGIPGFIEKGNRIEAIRTAIE 454
              +L   D   + D  P  E P E I +++       +   P  +   +  E I   I+
Sbjct: 366 FVSSLAQFDQLALLDIYPARELPIEGITSQVLCNKIQKLDAKPSVVNVLD-KEDIAEFID 424

Query: 455 MLNKQDVLVVAGKGH 469
            +N + V+V+ G G 
Sbjct: 425 EMNTR-VVVMIGAGD 438


>gi|332991938|gb|AEF01993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas sp.
           SN2]
          Length = 470

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 64/405 (15%), Positives = 127/405 (31%), Gaps = 51/405 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G + +V+S    L            + V+ +   F  L        +    + +TG++G
Sbjct: 63  AGVDTLVLSPGLPLNIEQVKQAKACGVEVIGDVELFARL--------NNTPTIGITGSNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      + +  G    + G         +    T P  +   + LS         +
Sbjct: 115 KTTVTLLTTHMLKACGYEVCEAGNVG------RPVLETLPESMAELETLSSSL----DVI 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +KL A S  N+  DH+D H   Q Y  AK R+F         A+
Sbjct: 165 VLELSSFQLE--TTSSLKLNAASILNISDDHLDRHGDMQQYTAAKQRIFSHC----HTAV 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           ++  D           +     ++ G       +        +  +TI+ E         
Sbjct: 219 VWRGDKQV-----TPASNCENTITYGLD-----MSDTGFGLREGVITINGEALLNTADIR 268

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALV------LEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           L G   V N + +  LC A                 +      P R   +  N  G +  
Sbjct: 269 LAGMHNVLNVMASLALCQAFSTSLNKPALLNTAARAVASFTSAPHRCVEI-ANINGVKWI 327

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            D   T+    +        T+   I++   G  +      +   +   + ++  +  D 
Sbjct: 328 DDSKATNVGATIAAIQGLAPTTNGKIILIAGGDSKGADLSALKPALDESVGEVIALGKD- 386

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +E    +  +            +  +A+  A       D++++
Sbjct: 387 --AEKFSAVFRD-------TTIVASMEKAVLAANLRAGNGDIVLL 422


>gi|331680370|ref|ZP_08381029.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H591]
 gi|324118795|gb|EGC12687.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E1167]
 gi|331071833|gb|EGI43169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H591]
          Length = 457

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +      +  P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|261823145|ref|YP_003261251.1| UDP-N-acetylmuramate [Pectobacterium wasabiae WPP163]
 gi|261607158|gb|ACX89644.1| UDP-N-acetylmuramate [Pectobacterium wasabiae WPP163]
          Length = 461

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 121/365 (33%), Gaps = 42/365 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTS--TISSFAQDNRLTTPSPIYL 170
             ++AV GT GK++ A  V  I +  G     +  G     T+S+   D+          
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADEY 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A     S+ V +                          NL  DH D     +A     
Sbjct: 163 DCAFFDKRSKFVHYC------------------PRTLVLNNLEFDHADIFDDLKAIQKQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L   L+P     I   +D   K+VM  A         VG +G     +KV    ++ Q
Sbjct: 205 HHLV-RLVPGTGKIISPTNDLNLKQVM--AMGCWSEQELVGEEG-VWRAQKVAIDASQYQ 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V ++ E    +  + L GE  ++N L+A      +G+  A     L        R E  G
Sbjct: 261 VYLNNE-LVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELRG 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--L 407
           T   G  +Y D+AH   ++   L  +R+   G   I+                 ++A  L
Sbjct: 320 TE-HGVAVYDDFAHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSL 378

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLV 463
             AD   +         P  I  +++      I+  +    I T +E         D ++
Sbjct: 379 ARADEVFLFQ-------PTHIPWQVVEVAEACIQPAHWSADIDTLVENIVKTAQPGDHIL 431

Query: 464 VAGKG 468
           V   G
Sbjct: 432 VMSNG 436


>gi|291278997|ref|YP_003495832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
 gi|290753699|dbj|BAI80076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
          Length = 413

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 129/376 (34%), Gaps = 54/376 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GKS+      QI  + GL S   G                         L Y 
Sbjct: 88  IGITGSNGKSTTTFLTSQILNKIGLKSVACGNIG--------------------YPLGYA 127

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +  VE SS  +D  R  G  L AG   N+  DH+D ++T + Y  +K+RL  EL
Sbjct: 128 IFDDFDYFVVEFSSFQIDLMR-KGEFLDAGVIINITPDHLDRYKTFENYLKSKVRL-SEL 185

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  +   ++       K++     N    + +      +  LK          + ++   
Sbjct: 186 LKDDGFFVV------GKDITSYIANYDLCIDT--DFNDYPKLKGDVLYFENFYINVN--- 234

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGG 356
                 FPL G+  + N   A  +      +    + HL E L  +P R E V       
Sbjct: 235 -----HFPLVGKHNLVNLSFALEIVNNF-YELKGDVTHLIEDLKGLPHRCEIVREIDGIL 288

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +        +S +  LK +        I++   G D+D     +   I      +    
Sbjct: 289 FVNDSKGTNVDSTKTALKGLD-----GKIILLLGGLDKDGDFSELNDDIKKKCKAVVCF- 342

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
                  D + I  +I       I      EA  T+ E+    D+++++  G  +     
Sbjct: 343 -----GRDAKNIYDQID--FEKKILVNKLKEAFDTSTELAKSGDIVLLS-PGCASFDEFN 394

Query: 477 NGEKKMSVDCDIIREI 492
           N E++      ++ E 
Sbjct: 395 NFEERGEYFKKLVDEY 410


>gi|86740123|ref|YP_480523.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia sp. CcI3]
 gi|109892704|sp|Q2JD48|MURC_FRASC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86566985|gb|ABD10794.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia sp. CcI3]
          Length = 502

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 103/374 (27%), Gaps = 58/374 (15%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQIC 137
           S+ +  + P +V     + L L   R     PE      ++AV G+ GKS+ ++ +  + 
Sbjct: 78  SSALPDDHPEIVAA---RALGLPVRRRSEWLPELTAGYRLVAVAGSHGKSTTSAMLTLVL 134

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + +GL      PT+ I +          +       L      G                
Sbjct: 135 RAAGLD-----PTAVIGAEVSQLGGNALAGSGDVFVLESDEYGGAFA------------- 176

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
              G+       TN+  +H D     +A        F   +      ++  D      V+
Sbjct: 177 ---GLDPSIAVITNVEWEHPDVFPD-EASVRTAFAAFARRVRPGGRLVVCGDHPGVVAVL 232

Query: 258 KRAHNAG---------CRVLSVGYQGKFIHLKKVCAIHNKQQVT----ISVEGKDFDFLF 304
                             V+  G+  +               +T    +    +      
Sbjct: 233 TELGRQRPGNDVAVNDVAVIDYGFGAERHWRAVDVVTTAGDDMTRATVLRAGQEIGALTL 292

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR------- 357
            +PG   V NAL        +G+  A  L  L        RFEFVG  +           
Sbjct: 293 TVPGRHSVLNALAVLATATELGVAPAQTLTTLTTFTGAARRFEFVGFWNGPADSTGVGPA 352

Query: 358 -------IYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  +  DYAH    + + L          +I  V                  A   
Sbjct: 353 GGPGSLEVIDDYAHHPTEVRLTLAAARSRARGRQIWTVLQPHTFSRFAALLDDFAAAFSD 412

Query: 410 ADIAIVTDDNPRSE 423
           AD   VTD     E
Sbjct: 413 ADRVYVTDIYAARE 426


>gi|313617977|gb|EFR90137.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria innocua
           FSL S4-378]
          Length = 461

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 100/283 (35%), Gaps = 24/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + ++    + 
Sbjct: 169 QYISMELSSFQLM--GVQTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHI-QQNQTADD 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+      +V+      +      V        +    E      
Sbjct: 226 FLVINWDQEELKNLTKQTK---AQVIPFSTTQRLEQGSYV----QNGNIMFDDEVIGSRD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 279 SILLPGEHNLENILASVAVAKTLGVTNEEIMYVLETFKGVEHRTQFV-VEWQGRKFYNDS 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++       + I          
Sbjct: 338 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKSLIVF-------G 386

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI       +   A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGI-EVHYVDDVEAAVPVAYRESAPGDIILL 428


>gi|168262553|ref|ZP_02684526.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205348947|gb|EDZ35578.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 459

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 116/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 -GAKVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|227113988|ref|ZP_03827644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 438

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 141/400 (35%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALATPILCDAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLPA--------------------LQLLEQPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH + +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEH----ADLCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R  S G      HL +      + +  + V+G+        
Sbjct: 212 NADDALTMPV----RGADARCRSFGVDVGDYHLNR-----QQGETWLRVDGERVLNTREI 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+ I  A  L  L     +P RF+     +    I    A 
Sbjct: 263 KLVGQHNYTNALAALALADAVKIPRASALTALTSFTGLPHRFQMAFERNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P++  +  +   +     D    + 
Sbjct: 323 NVGSTEAALSGLA--VEGSLHLLL-GGDGKSADFSPLVPYLQGEHIHLYCFGQD---GQQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     +A+R   E +   D++++
Sbjct: 377 LAALRPEISE------QTKTMEQAMRIIAERVKPGDMVLL 410


>gi|227014297|gb|ACP10507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
          Length = 467

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 138/397 (34%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 96  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 147

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 148 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+F+        A++ 
Sbjct: 188 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMGDYRQAKLRIFDH----AETAVVN 241

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 242 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 296 GRHNVTNVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 354 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 404

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 405 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|170681037|ref|YP_001746635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli SMS-3-5]
 gi|170518755|gb|ACB16933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli SMS-3-5]
          Length = 457

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     +    + +     S  ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV--IGGVPGNFEVSACLGESDFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|15604275|ref|NP_220791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           prowazekii str. Madrid E]
 gi|6225735|sp|Q9ZDC2|MURD_RICPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3860967|emb|CAA14867.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (murD) [Rickettsia
           prowazekii]
 gi|292572022|gb|ADE29937.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Rickettsia
           prowazekii Rp22]
          Length = 445

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 110/306 (35%), Gaps = 46/306 (15%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I ++ +   F                +A+TGT+GKS+  
Sbjct: 67  IVLSPGVPLTHEVVRIAHHFNIPIISDIDLF-------FEKSKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                     +    +  S++G     +E S
Sbjct: 120 ALISHILNSNGLDYPVAGNIG------------------VPALQAKASNEG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +    +      N+  DH+D +Q    Y  AK ++F+  + K+S A+I  D+
Sbjct: 159 SFQLDL--VKSFTVKVAVLLNITPDHLDRYQDMNDYIAAKAKIFDR-MDKDSYAVINIDN 215

Query: 251 AYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y +++      +   +++         +   +            +   D  +  PL   
Sbjct: 216 DYCRKIFVLLQKDQSIKLIPFSVTKILKNGISIVDD--------KIHDNDLTYKLPLNKN 267

Query: 310 ----FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
                   N   +  +   IG++S  +LE +     +  R +++G+ +     + + +  
Sbjct: 268 LQGLHNCENIAASYAVAKIIGLESKKILESISSFQSLHHRMQYIGSINNIS--FYNDSKA 325

Query: 366 SNSLEM 371
           +N++  
Sbjct: 326 TNAISA 331


>gi|198242179|ref|YP_002218299.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197936695|gb|ACH74028.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326626105|gb|EGE32450.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 118/357 (33%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVSGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|157826844|ref|YP_001495908.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
 gi|157802148|gb|ABV78871.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
          Length = 450

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 125/390 (32%), Gaps = 47/390 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  N  I +  +   F              N+LAVTGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVKIAKNFNIPITSDIDLF-------FEKSKGLNLLAVTGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                     +    +  S  G     +E S
Sbjct: 120 ALISHILSDNGLDYPIAGNIG------------------VPVLQAKASKGG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D H+  + Y  AK ++F+  + K+S  II  D+
Sbjct: 159 SFQLDL--VKTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDR-MDKDSYGIINIDN 215

Query: 251 AYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y  E+          +++             +            +  K       L G 
Sbjct: 216 DYCHEIFTNLQQKHHIKLIPFSVTKILEKGISIVNDIITDNFFEHISFKLISNKS-LQGI 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N   +  +   IG++   ++E +     +P R +++G N      Y D   T+   
Sbjct: 275 HNSENIAASYAVARIIGLEPVKIIESISSFQGLPHRMQYLG-NIDDINFYNDSKATNA-- 331

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +  +++I +   I     G  ++ G   I    +                E      
Sbjct: 332 ---IAAVQSIKALDNIYWLAGGIAKEGGIEEIKPYFSKIKKAYFY----GQAKEMFANTA 384

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +II     F+   +  +A   A +   K 
Sbjct: 385 KDII----DFVICDDLKQAFELAYKDACKD 410


>gi|227514825|ref|ZP_03944874.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           fermentum ATCC 14931]
 gi|227086815|gb|EEI22127.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           fermentum ATCC 14931]
 gi|299783027|gb|ADJ41025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus fermentum
           CECT 5716]
          Length = 466

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 151/390 (38%), Gaps = 49/390 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y     +A ++  TPI+    T   L       Y     ++++VTG++GK++  + ++Q
Sbjct: 91  PYDTPLVAAFVKKGTPII----TELELG------YQVFAGHLISVTGSNGKTTTTTLIEQ 140

Query: 136 ICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +   +  +  ++     I  SF++      P    +                 EASS  L
Sbjct: 141 M--VAMGNPHRVEYAGNIGVSFSKVAEELGPDDTIVT----------------EASSFQL 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   +      TN+  +H+DYH+T+Q Y +AK+ +      K+   +I  D    +
Sbjct: 183 LGAPTY--RPHIAVITNIFANHLDYHKTRQNYIDAKLGI-TRNQTKDDYLVINWDKEEWQ 239

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++ KR  NA     S   + +    +K   ++ +Q+  ++ +         L G   V N
Sbjct: 240 KLAKR-TNATVVPFSRLAKSQEGAYQKGGDLYWRQERIMAAKD------VVLIGPQNVEN 292

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A       G+ +  ++  L     V  R ++V  +  G R Y D    S  +E    
Sbjct: 293 ALAAIAAAKLSGVANEAIVRVLTTFTGVRHRLQYV-LDYEGRRFYNDSK--STDIEATEV 349

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++       +++   G DR      ++      +  + +  +    S+D  K   E   
Sbjct: 350 ALQGFEQP--VILLAGGLDRGYTFERLVPYFREHVKALIVFGE----SKDKMKAAGE-QA 402

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G+   +E  + + A+  A  +    DV+++
Sbjct: 403 GVKTIVESTDAVTAVPEAWRLSEPGDVILL 432


>gi|329768577|ref|ZP_08260064.1| UDP-N-acetylmuramate-alanine ligase [Gemella haemolysans M341]
 gi|328836618|gb|EGF86277.1| UDP-N-acetylmuramate-alanine ligase [Gemella haemolysans M341]
          Length = 434

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 102/314 (32%), Gaps = 39/314 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG  GK++  +    I + S ++S+ IG  +                    K   Y+
Sbjct: 104 IAITGAHGKTTTTTMTSNIFKHSHVTSYLIGDGTGHG----------------EKNSEYM 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++   +       H L  H            TN+  DH DY   +   F+A      ++
Sbjct: 148 IAEACEYYR-----HFLAYH------PDYAVVTNIDFDHPDYFNDEHDMFDAFQSFVNQV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                  +I  DD     +  +   A  + +  G+  G    +K V       +  I   
Sbjct: 197 KN---TVVICGDD----RLASQLKPAQAKTIKYGFNDGNDYQIKNVQTTSEHSKFDIYKN 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   + G   + NA  A  L    GI    + E L +      RF      +  
Sbjct: 250 SELLGTFTMSVFGLHDISNATSAIALADLNGISVEKIQESLSQYKPAERRFSEHKIGN-- 307

Query: 356 GRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH  + ++  +    R      +I +F         K       +L+ AD   
Sbjct: 308 SVVVDDYAHHPSEIKATINSARRKYADKEVIAIFQPHTYTRTAKFLNEFAESLETADKVF 367

Query: 415 VTDDNPRSEDPEKI 428
           +        + EKI
Sbjct: 368 LCPIFASVREKEKI 381


>gi|302557646|ref|ZP_07309988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
 gi|302475264|gb|EFL38357.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
          Length = 462

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 135/453 (29%), Gaps = 88/453 (19%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH      +A  A  +VVSSA    +      +   I VV  +       A+ +
Sbjct: 54  GATVHIGH--AAGHLADDASCVVVSSAIREDNPELVRAAELGIPVVHRSDA----LAALM 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPI 168
            G  P   +AV GT GK++  S +       G   S+ IG                    
Sbjct: 108 DGLRP---IAVAGTHGKTTTTSMLAVSLTALGREPSYAIG-------------------G 145

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L    S     G      EA       H+            N+  DH   + + +    
Sbjct: 146 DLDAPGSNALHGGGEIFVAEADESDRSFHKYA---PEVAIILNVELDHHANYASMEEIHQ 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHN 287
           +    F   +      +I AD   ++E+ +R  +   R ++ G      + +  V     
Sbjct: 203 S-FETFVGRVVPGGTLVISADHEGARELTRRL-DGSVRTVTYGESADADVRVLSVVPQGL 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +VT+ ++G    F   +PG    +NA+ A     A+GI +A +   L     V  R +
Sbjct: 261 RSEVTVELDGAPLTFTVSVPGRHYAHNAVAALAAGAALGIPAAELAPALAAYTGVKRRLQ 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII---------------------- 385
             G  + G ++   YAH    +   L+ +R       I                      
Sbjct: 321 LKGEAA-GVQVVDSYAHHPTEMTADLEAMRAAAGDARILVVFQPHLFSRTRELGKEMGQS 379

Query: 386 -------VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                  VV      R+                   VT         E I          
Sbjct: 380 LSLADASVVLDIYPAREDPIPG--------------VTS--------ELIIEAARAAGAD 417

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                ++ E       M    D+++  G G  T
Sbjct: 418 VTAVHDQAEIPEVVAGMAKPGDLVLTMGAGDVT 450


>gi|114777351|ref|ZP_01452348.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552133|gb|EAU54635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Mariprofundus ferrooxydans
           PV-1]
          Length = 462

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 116/364 (31%), Gaps = 26/364 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              + + V GT GK++ +S +  +  R+ LS   +     I    +D      +      
Sbjct: 102 PGRHAVVVAGTHGKTTTSSLLAWVLDRADLSPGFM-----IGGIPEDFGTGARTGGGPHF 156

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L                 H   +              NL  DH D     +A   A+  
Sbjct: 157 VLEGDEYDTAFFDKRSKFLHYHARTL---------ILNNLEYDHADIFPDLEAI-QAQFH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                +P     ++  DD     V+ R       R    G +    H + +       + 
Sbjct: 207 HLIRTVPAAGSIVVNGDDDNLDYVLARGCWTPLVRFARYGGRDAEWHWQPLSDD--GSRF 264

Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G +  +  + + G  QV NA   A     +G+ SA +         +  R   VG
Sbjct: 265 RLYQHGDEVMEVSWGMIGLHQVANACAVAATASRLGVSSADIAAAFASFGGIRRRMTLVG 324

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMG-KIAL 407
               G RI+ D+AH   ++  ++   R      GR+ VV     +  + +          
Sbjct: 325 EVG-GIRIFDDFAHHPTAISGVVAAARAAMKGRGRLWVVVEPRSNTMRSRIHQQALPACF 383

Query: 408 DLADIAIVTDDNPRSEDPEKIR--AEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD  +    + R+ +   +   AE+   I P  +   +    I       ++ D +++
Sbjct: 384 AAADQVVFVPASDRNLNASDVLDVAEVCRAIGPHAVVLADAEAIIAHIRSHASEGDDVLI 443

Query: 465 AGKG 468
              G
Sbjct: 444 LSNG 447


>gi|90961461|ref|YP_535377.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           UCC118]
 gi|227890551|ref|ZP_04008356.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ATCC 11741]
 gi|301299769|ref|ZP_07206012.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|122449234|sp|Q1WUP1|MURC_LACS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|90820655|gb|ABD99294.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus salivarius
           UCC118]
 gi|227867489|gb|EEJ74910.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ATCC 11741]
 gi|300214313|gb|ADJ78729.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Lactobacillus salivarius CECT 5713]
 gi|300852624|gb|EFK80265.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 443

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/380 (16%), Positives = 110/380 (28%), Gaps = 66/380 (17%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S +  +  +      +S+ +G  S   +         P+  +        
Sbjct: 107 IGVAGAHGKTSTSGLLAHVLSGVSPTSYLVGDGSGKGT---------PNARFFVFEADEY 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V +                         TN+  DH DY        +A   L    
Sbjct: 158 RRHFVAYH------------------PDYAIMTNIDFDHPDYFTDIDDVRDAFETL---A 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
           +  +    ++ +D   +++     NA   V   G +       + +          +   
Sbjct: 197 MQTKKGIFVWGEDENLRKL-----NAKVPVHYYGTKSDDDFRAENIKRTTKGSNFDVYFH 251

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +   ++  P+ GE  V N+L    +     +D   + + L     V  RF         
Sbjct: 252 DEFIGNYDIPMFGEHNVLNSLAVIAVSYMEKVDQQEIAKELLTFKGVKRRFTEKRVADM- 310

Query: 356 GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH    ++  +   R      +II VF                 +L LAD   
Sbjct: 311 -VIIDDYAHHPAEIKATIDAARQQYPDKKIIAVFQPHTFSRTIALMDEFAESLSLADKVY 369

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----------KQDVLVV 464
           +TD          I + I     G +   +  + I    E+L             DV++ 
Sbjct: 370 LTD----------IFSSIREH-DGKVSSEDLGKKISKGGEVLKLDNMSPLLDFHDDVVIF 418

Query: 465 AGKGHETVHIVTNGEKKMSV 484
            G G      +   E     
Sbjct: 419 MGAGD-----IQKYEHAYED 433


>gi|238918676|ref|YP_002932190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Edwardsiella
           ictaluri 93-146]
 gi|238868244|gb|ACR67955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Edwardsiella ictaluri 93-146]
          Length = 438

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 148/401 (36%), Gaps = 60/401 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   +    +   + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALSSPALDQAAQAGVEIVGDIELF--------CREAQVPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +G      G                        ALS L  +      +
Sbjct: 118 TVTTLVGEMACAAGWQVGVGGNIGV-------------------PALSLLKHE-CRLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH++ +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTASLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYEN----ARACVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +    H A  R +S G      HL +      + ++ + V G+        
Sbjct: 212 NADDALTMPI----HGADTRCVSFGVDVGDYHLNR-----QQGEIWLRVRGEKILNTKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+G+  A  L  L     +  RF+ V  +S    I    A 
Sbjct: 263 QLTGIHNYTNALAALALADAVGLPRASSLRALTTFRGLAHRFQLVLEHSGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  LK +    +G + ++   G  +D    P++  +  D   +        R   
Sbjct: 323 NVGSTEAALKGL--HLNGTLHLLL-GGDGKDADFTPLLPYLRGDRIRLYCFG----RDAG 375

Query: 425 PEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
           P  +        P    + +   +A+R    +    D++++
Sbjct: 376 PLMLLR------PEVSRRFDTMEQAMRALAPLTRAGDMVLL 410


>gi|315293602|gb|EFU52954.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 153-1]
          Length = 445

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 116/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +   +           
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEFS----------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 135 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 195 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 250

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 251 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 309 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 368

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 369 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 424


>gi|295394737|ref|ZP_06804952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972333|gb|EFG48193.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 501

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 138/402 (34%), Gaps = 56/402 (13%)

Query: 83  SATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           S   R + P+LV    +          A R+ G +    L +TGT+GK++  S +  + +
Sbjct: 109 SQGWRPDQPLLVDAQAKGVPVIGEVELAWRVRGTNAAPWLVITGTNGKTTATSMLASMFR 168

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G+++   G                      +  L  +       +++E +S  L  H 
Sbjct: 169 AAGVNAVACGNIG-------------------SPLLEAVLDPAAEVLAIELASFQL--HW 207

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +   + +  NL  DH+D+H + + Y   K R++  ++      +   +D  ++++++
Sbjct: 208 QFSMCAHSAAVLNLAPDHVDWHGSYENYVADKARVYSNVM---KACVYNREDLATRKLVE 264

Query: 259 RAHN-AGCRVLSVGY----QGKFIHLKKVCAIH------NKQQVTI-SVEGKDFDFLFPL 306
            A   AG R +  G      G+F  ++ +              + + S++          
Sbjct: 265 DAEVVAGARAVGFGLGVPGPGEFGLVEDILVDRAFAPNRYSSALELASLDDVAKAAGTTS 324

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             +  V NAL AA L  +I +    V + L        R   V T      +    A   
Sbjct: 325 APDHYVMNALAAAALARSIDLPPVAVRDGLRSFAPGDHRMRVVRTLDDITWVNDSKATNP 384

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++    L +         IV    G  +      I+      L  + ++       ED  
Sbjct: 385 HAASAALGSFDP------IVWIAGGLPKGADYHDIVEGFKDRLRSVVVI------GEDDS 432

Query: 427 KIRAEIIHGIPGFIEKGN----RIEAIRTAIEMLNKQDVLVV 464
            + + +       I           A+  A E+    D +++
Sbjct: 433 ALSSALEASHVDTIRIEPGPRVMERAVNAARELAQPGDTVLL 474


>gi|51246751|ref|YP_066635.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea
           psychrophila LSv54]
 gi|62900515|sp|Q6AJ52|MURD_DESPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50877788|emb|CAG37628.1| related to UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Desulfotalea psychrophila LSv54]
          Length = 456

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 141/412 (34%), Gaps = 58/412 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH F  Q ++Q A+ I VS  ++  +  A +R     ++ +       L           
Sbjct: 67  GHTF--QFLSQ-ADVIFVSPGFADGELLARLRRAGVQVLGELALAAPVL---------DR 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TGT+GK++V S V  + + SG   F  G                     L   LS
Sbjct: 115 PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGNIGVP----------------LLDLLS 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S   V  + +E SS  L+               NL  DH+D H     Y  AKM LF+
Sbjct: 159 --SGDEVDVIVLEVSSFQLELA--GDFSPHIALLLNLSPDHLDRHGDLAGYRAAKMHLFQ 214

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +    +  AI+  DD     ++        R L  G+                       
Sbjct: 215 KQGMTD-IAIVSGDDPLC--LLSDGCGEASRYL-FGFSAAS------DISVAAGHFEFDF 264

Query: 296 EGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            G+   +      L       NA  AA +  ++    A +   +    +   R E V + 
Sbjct: 265 AGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIERGIAAFTLDAHRMEPVASI 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G + Y D   T+     ++  ++ +     +++   G D+    R +   +A  +  +
Sbjct: 325 A-GVQYYNDSKATNTG--AVISALQQLV---RVILIAGGRDKGDNYRLLREAVAGHVRTL 378

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             + +  P       +    +  +       +  EA+  A     + D +++
Sbjct: 379 ICIGEATP-------LLVAALEDVVQVYRATSLAEAVSLAASFAEEGDSVLL 423


>gi|194337862|ref|YP_002019656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|226722941|sp|B4SHE6|MURD_PELPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|194310339|gb|ACF45039.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 464

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 144/435 (33%), Gaps = 49/435 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLS-------LFASRLYGKHPENILAVTGTSGK 126
           S A    DF        P   V  T +  +         ASR        I+ +TGT GK
Sbjct: 60  SPAVYEADFCVISPGIPPHAEVVTTLQARNIPLYSEIELASRFCK---ARIVGITGTDGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ ++ V  +C+  GL +       ++ +                     L  +      
Sbjct: 117 TTTSTLVHALCEEDGLRNGY--RAYSVGNIGVPFSSMV------------LDMKAGDIAV 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAI 245
           VE SS+ L+  R   +K       N+  DH+D +    Q Y  AK R++      ++   
Sbjct: 163 VELSSYQLE--RSPTLKPEVAVIMNITPDHLDRYAGELQGYAAAKFRIYANQGAGDTLIY 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLF 304
              DDA  +E           ++S G +     +  +         +       D   L 
Sbjct: 221 -NEDDALLREHFACRDQFPFNIMSFGMEPACKGVPDIRTFFLEGDTLVAHTPDGDEPVLV 279

Query: 305 P-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                     G   + N L A  +  A+GI   +V + + +   V  R EFV T +    
Sbjct: 280 TSDFLKKSFRGRHNISNVLAAVAVAGALGIQREVVCQVIREFRGVEHRQEFVMTINGVDW 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +    A   N+L   L+ +         V+   G D+      I   +   ++ +  +  
Sbjct: 340 VNDSKATNMNALRQALEALPATA-----VLIAGGRDKGNDYAAITRLVEKKVSLLIAL-- 392

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                E  +KI +     +      G+  +A+  A +  +    ++ +  G  +  +  N
Sbjct: 393 ----GESQDKIVSAFKD-VVAVKAAGSLEDAVLLARDAASSGQTVLFS-PGCASFDMFKN 446

Query: 478 GEKKMSVDCDIIREI 492
            E +       + ++
Sbjct: 447 FEDRGMQFKQCVHQL 461


>gi|317472438|ref|ZP_07931762.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900082|gb|EFV22072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
           3_2_56FAA]
          Length = 454

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 94/278 (33%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH+D H T + Y   K  + +     +   ++ 
Sbjct: 164 EISSFQLE--TIQDFCPKVSAVLNITPDHLDRHGTVEVYAKTKESIGKNQT-GDQVMVLN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  ++ + +RA NA     S+ ++ +     K  +    +  T+     + D      
Sbjct: 221 YEDPVTRNMAERA-NARVVFFSLDHELEEGVYFKDGSFMLAENKTVQTICTEADINLLGG 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 N L A  +   +G+ +  + + +     V  R E+V T              ++
Sbjct: 280 --HNYENILAAIAVSHYMGVPAEQIRKGVSGFKGVEHRIEYVDTIKDVAYYNDSKGTNTD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +K +   T       F  GG  D+         A D     ++          EK
Sbjct: 338 AAIKGIKAMNRPT-------FLIGGGYDKKAEYDDWIEAFDGKVKELILL----GATAEK 386

Query: 428 I-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I +    HG    +      EA+  A +     D +++
Sbjct: 387 IGKTAEAHGFSRIVYVDTLEEAVEYASKHAVSGDAVLL 424


>gi|313106944|ref|ZP_07793147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
 gi|310879649|gb|EFQ38243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
          Length = 448

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 116/350 (33%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ KS+V + V ++   +       G   T +                    
Sbjct: 109 APIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +  +    +E SS  L+    D +     +  N+  DH+D +     Y  AK R+F
Sbjct: 149 LDLLADDIELYVLELSSFQLE--TCDRLNAEVATVLNVSEDHMDRYDGMADYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA ++ ++           S G          +     ++ +   
Sbjct: 207 RG----ARQVVVNRADALTRPLIAD----TVPCWSFGLNKPDFKAFGLIEEDGQKWLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A G+    +L  L+    +  R ++V    +
Sbjct: 259 FDKLLPVGELKIRGAHNYSNALAALALGHAAGLPFDAMLGALKAFSGLAHRCQWV-RERQ 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G   Y D   T+    +             +V+   G  +      +   +A     + +
Sbjct: 318 GVSYYDDSKATNVGAALAAIEGLGADIDGKLVLLAGGDGKGADFHDLREPVARFCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 378 L------GRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|152979588|ref|YP_001345217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus succinogenes 130Z]
 gi|150841311|gb|ABR75282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           succinogenes 130Z]
          Length = 437

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 143/397 (36%), Gaps = 57/397 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++        +  I VV +          R      + ++A+TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALSAGIEVVGDI-----ELFCREANIQAKPVVAITGSNGKSTVT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +  GL +   G                        ALS L         +E S
Sbjct: 124 TLVAEMAKADGLRAGMGGNIG-------------------IPALSLL-DAEYDLYVLELS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+     G++  A +  N+  DH++ +   + Y  AK++++         A+I A+D
Sbjct: 164 SFQLE--TTFGLRARAATVLNVTEDHMNRYADLEDYRQAKLKIYAN----AETAVINAED 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLP 307
           + +++  +RA     R  S G       LK       +   ++V +  +         + 
Sbjct: 218 SLTQDNKQRAK----RQFSFGESHADYWLKTENGKQYLMAGREVVLPCD------EVKIS 267

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL +  L  A+G+ +  +   L     +  RF+     + G R   D   T+ 
Sbjct: 268 GRHNYMNALASIALAQAVGVKTHGIRTALRTFTGLDHRFQLAHL-ANGVRWINDSKATNV 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
              +       +     +++ G G   D      + K+             +  +     
Sbjct: 327 GSTVAALTGLYLEGNLHLLLGGDGKGADFS---ELEKLVNKPEIFCYCFGQDGAALAKLS 383

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            R+++   +   +       A+R A+      D++++
Sbjct: 384 ARSQLFETMEQAVN------ALRPAL---KSGDMVLL 411


>gi|329298857|ref|ZP_08256193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Plautia stali
           symbiont]
          Length = 439

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 145/397 (36%), Gaps = 57/397 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+ S   +L   + +  ++  I +V +   F          +    I+A+TG++GKS+V 
Sbjct: 69  IIASPGIALAHPALSEAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G    Q+G    I                   AL+ L S    +V +E S
Sbjct: 121 TLVGEMARAAGW---QVGVGGNIG----------------LPALTLLKSPAQLYVVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E         ++ AD
Sbjct: 162 SFQLE--TTYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYEN----ADICVVNAD 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLP 307
           D  +  V      A  R +S G      HL +           + V+G+         L 
Sbjct: 216 DGMTMPV----RGADRRCVSFGIDVGDYHLNQQQGSTW-----LRVKGEKVLNTDEMKLV 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+ I  A  L+ L     +P RF+ V        I    A    
Sbjct: 267 GQHNYTNALAALALADAVNIPLASSLKALTTYSGLPHRFQLVHEAHGVRWINDSKATNVG 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++   G  +     P+   +  D   +        R  D   
Sbjct: 327 STEAALNGLQ--VKGTLWLLL-GGDGKGADFTPLARYLQGDNVRLFCFG----RHGDALA 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +      +E+G     +      +   D++++
Sbjct: 380 ALRPAVATCTDTLEQG-----MTQIAAQVQAGDMVLL 411


>gi|295677713|ref|YP_003606237.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1002]
 gi|295437556|gb|ADG16726.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1002]
          Length = 464

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 120/360 (33%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 150 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAI-ETQFHHL 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P+    +    +   + V+ R       V   G QG +        +   ++  + 
Sbjct: 209 IRTVPRLGRVVTNGREDALERVLTR--GCWSEVERFGVQGGWEIQPAEQGVPVDERFAVY 266

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+    + + + GE    NAL A      IG+  A   + L     V  R E  G + 
Sbjct: 267 RNGERVGVVDWQVQGEHNRMNALAAIAAARHIGVPPAQAAKSLSSFRNVKRRMEVRG-SV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 326 DGVTVYDDFAHHPTAIETTVAGLRARVGRDNTRILAVLEPRSNTMKLGVMKAQLPASLAD 385

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
              +     P   D       E +  + G  +  + ++A ++  +      D ++V   G
Sbjct: 386 ADLVFGYGAPSGRDALGWNLGEALAPLDGKAQAFDNLDALVKAVVHAARPGDQILVMSNG 445


>gi|33240888|ref|NP_875830.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|60390538|sp|Q7VAM1|MURD_PROMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33238417|gb|AAQ00483.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 470

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 145/433 (33%), Gaps = 57/433 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++VS        +        I+V                       + +TGT+GK++
Sbjct: 78  ALVIVSPGIPWDHPTLNQLRKRGIIVESEINLAWRAL-------KNTPWVGITGTNGKTT 130

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  +   S + S   G                 +   +A AL   +      + +E
Sbjct: 131 VTHMLNHVLNNSFIESTIGGNVG-------------KAATEIALALRKSTKHKPKWLIME 177

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS+ ++      I    G +T L  DH++ H + + YF  K  L        S  I  A
Sbjct: 178 LSSYQIETA--PEISPEIGIWTTLTPDHLERHGSLENYFAIKRTLIAN----SSIRIYNA 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLP 307
           DD Y    + +      + L V  Q    ++ ++    +   + I    + F      LP
Sbjct: 232 DDKY----LSKNRLNLPKGLWVSAQKYNSNINQLDFWISSNGMVIEQGNELFHSSALQLP 287

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L+ +     IG+    +   L     +  R E V             A   +
Sbjct: 288 GDHNLQNLLLVSAAARKIGLSGMAIENALISFAGITHRLEKVDKIIDIDIFNDSKATNFD 347

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E+ LK          +++   G  +       + +I   +  + ++       E   K
Sbjct: 348 SAEIGLKATSA-----PVILIAGGLSKQGIYLDWINQIKEKVCAVILI------GESRVK 396

Query: 428 IRAEII-HGIPGFI---EKGNRIEAIRTAIEM-----LNKQDVLVVAGKGHETVHIVTNG 478
           ++  I  HG  G I   EK +  +A+  AI++            ++   G  +    +N 
Sbjct: 397 LQHLIKSHGFRGEIVCYEKLD--KAVDKAIKLGVKFRAKS----ILFSPGCASFDQYSNF 450

Query: 479 EKKMSVDCDIIRE 491
           E++      +I+E
Sbjct: 451 EERGDHFKKLIKE 463


>gi|16801208|ref|NP_471476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           innocua Clip11262]
 gi|30316097|sp|Q929Y1|MURD_LISIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16414656|emb|CAC97372.1| murD [Listeria innocua Clip11262]
          Length = 455

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 100/283 (35%), Gaps = 24/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + ++    + 
Sbjct: 163 QYISMELSSFQLM--GVQTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHI-QQNQTADD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+      +V+      +      V        +    E      
Sbjct: 220 FLVINWDQEELKNLTKQTK---AQVIPFSTTQRLEQGSYV----QNGNIMFDDEVIGSRD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 SILLPGEHNLENILASVAVAKTLGVTNEEIMYVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++       + I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKSLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI       +   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGI-EVHYVDDVEAAVPVAYRESAPGDIILL 422


>gi|28572692|ref|NP_789472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei TW08/27]
 gi|62900691|sp|Q83HK0|MURD_TROW8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28410824|emb|CAD67210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei TW08/27]
          Length = 480

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/430 (14%), Positives = 140/430 (32%), Gaps = 65/430 (15%)

Query: 62  QAIAQGAEAI------VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYG 111
            AI  GA  +      +          S  I  + P++     R+   L     A R+  
Sbjct: 58  DAI--GARYVCAYLDELCEVDVDFIVVSPGISPDNPVIKRLRDRQIPILSEIELAWRVRD 115

Query: 112 K-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           K +    + +TGT+GK++ A     +  + G      G   T                  
Sbjct: 116 KVNTCPWILITGTNGKTTTALLTGSMLAKDGARVAVCGNIGT------------------ 157

Query: 171 AKALSYLSSQGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
               +  + +G  +  VE SS  L     H    +K  + +  NL  DH+++H  ++ Y+
Sbjct: 158 PVLDAVRNPKGFDYFVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYY 217

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIH-------- 278
            AK R++          +   DD  +K+++++A      R +  G     +         
Sbjct: 218 RAKSRVYHG---TTGFCVYNLDDEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGI 274

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L     +  ++   + +   +      L     + + L A  L  ++  +   +   L++
Sbjct: 275 LCDRAFLSARKDSALEITSVEKLEKNKLSMRHIISDVLCAVALARSVETNPLSISRALDE 334

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             + P R E V        +    A   +++   L N         +++   G  +    
Sbjct: 335 FCLSPHRTEVVAKEMGVMWVNDSKATNPHAVIASLSNF------SRVILIFGGLMKGVDV 388

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIE 454
             I  +    +  + ++  +         I+          +   +      EA+  A  
Sbjct: 389 SGIFDRFYETIKAVVVIGKNQSF---VGNIK------CKKIVCIPDSNDPMSEAVAAADL 439

Query: 455 MLNKQDVLVV 464
           +    D +++
Sbjct: 440 LATPGDTVLL 449


>gi|116071267|ref|ZP_01468536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
 gi|116066672|gb|EAU72429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
          Length = 462

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 121/386 (31%), Gaps = 39/386 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V+         +  I     + V                  +    + +TGT+GK++V
Sbjct: 72  AVVIGPGIPWDHPTLEILRQEGVQV-------RGEIELAWDALNDIPWVGITGTNGKTTV 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  + +++GL    +G    +S+     ++ T   +     +  LSS  +       
Sbjct: 125 THLLSHVLEQAGLR-APMGGNMGVSAAEMALKIKTGDLLRPDWLVMELSSYQIEAG---- 179

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       +    G +T L  DH++ H T +AY   K      LL + S AI   D
Sbjct: 180 ----------PTLAPSIGIWTTLTPDHLERHGTLEAYRAIK----RGLLQRSSLAIFNGD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPG 308
           DA          +      +            +    +   +     G  F      +PG
Sbjct: 226 DADLNAHRSSLKSGIWVQTATPCPDDQPADFWI---DDAGTIQARESGAMFPADALAMPG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N L+     I IG+++  + +       VP R E +G+ +         A   ++
Sbjct: 283 AHNRQNQLLVTAAAIQIGLNAEQIAQGFRSFPGVPHRLERLGSTASADVFNDSKATNYDA 342

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             + L+ +        +VV   G  +       + ++      + +        E    I
Sbjct: 343 AAVGLQAMA-----GTVVVLAGGQTKRGDATGWLTELKSKACAVVLFGAG--AEELDALI 395

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIE 454
           R     G        +   A+  A++
Sbjct: 396 RQSDYQG--QVHRCNDLKAAVAIAVQ 419


>gi|82779294|ref|YP_405643.1| putative ligase [Shigella dysenteriae Sd197]
 gi|309784150|ref|ZP_07678790.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1617]
 gi|81243442|gb|ABB64152.1| putative ligase [Shigella dysenteriae Sd197]
 gi|308928013|gb|EFP73480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1617]
          Length = 457

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 118/363 (32%), Gaps = 38/363 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVA 465
           AD   +         P  I  ++       ++     G+        ++     D ++V 
Sbjct: 381 ADEVFLLQ-------PAHILWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|86132608|ref|ZP_01051201.1| UDP-N-acetylmuramate-alanine ligase [Dokdonia donghaensis MED134]
 gi|85816850|gb|EAQ38035.1| UDP-N-acetylmuramate-alanine ligase [Dokdonia donghaensis MED134]
          Length = 450

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 136/435 (31%), Gaps = 66/435 (15%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----------- 113
             G  A+         D     + NT ++        +          H           
Sbjct: 50  EAG-VAVHFQDKGDAIDEIFADKENTLVIYTPAVPSTMGELVRFRESGHILKKRAEVLGL 108

Query: 114 ---PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  LAV GT GK++ +S +  +   +G        T+ +     +           
Sbjct: 109 IANQSFSLAVAGTHGKTTTSSILGHLLAATGAP-----VTAFVGGITNNYNGN------- 156

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                 L   G     VEA     D+  L  +       T++  DH+D ++  +A   A 
Sbjct: 157 ------LIQNGSDITVVEADEF--DRSFLQ-LTPDILCITSMDADHLDIYED-EADLVAT 206

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQ 289
            + F  L+  E   +                       +VG +    +  + V  +    
Sbjct: 207 FQEFGSLVAPEKRFVKNGLPLAGN--------------TVGIEDDATYSTQNVRIVDGAY 252

Query: 290 QVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                       D    LPG   ++NA  A  + +A G   A + E L     V  RF +
Sbjct: 253 HFDFKYPDGVLKDLKVTLPGRHNLFNATTALSMAVAYGTPVAKLPEALASYAGVNRRFTY 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIAL 407
               S+   +  DYAH    +  + ++I+ +  G  ++ +F                  L
Sbjct: 313 RY-ESQDKVLIDDYAHHPTEIAAVYQSIKEMYPGEEVLAIFQPHLFSRTKDFMADFATEL 371

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              D   + D  P  E P      + +  ++       + K NR+  I TA    NK+ +
Sbjct: 372 SRFDEVALLDIYPARELPIEGITSQALLDKMTLSNKEIVTK-NRLPEIVTA---SNKK-I 426

Query: 462 LVVAGKGHETVHIVT 476
           +V+ G G   V I+ 
Sbjct: 427 IVMMGAGDIGVEILK 441


>gi|209520749|ref|ZP_03269496.1| UDP-N-acetylmuramate [Burkholderia sp. H160]
 gi|209498797|gb|EDZ98905.1| UDP-N-acetylmuramate [Burkholderia sp. H160]
          Length = 464

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 120/360 (33%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 150 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAI-ETQFHHL 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P+    +    +   + V+ R       V   G QG +        +   ++  + 
Sbjct: 209 IRTVPRLGRVVTNGREDALERVLTR--GCWSEVERFGVQGGWEIQPAEQGVPVDERFAVY 266

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+    + + + GE    NAL A      +G+  A   + L     V  R E  G + 
Sbjct: 267 HNGERVGVVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAKSLSGFRNVKRRMEVRG-SV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 326 DGVTVYDDFAHHPTAIETTVAGLRARVGRDNTRILAVLEPRSNTMKLGVMKAQLPASLAD 385

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
              +     P   D       E +  + G  +  + ++A ++  +      D ++V   G
Sbjct: 386 ADLVFGYGAPSGRDALGWNLGEALAPLDGKAQAFDNLDALVKAVVHAARPGDQILVMSNG 445


>gi|161617695|ref|YP_001591660.1| hypothetical protein SPAB_05558 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161367059|gb|ABX70827.1| hypothetical protein SPAB_05558 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 459

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|205355172|ref|YP_002228973.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274953|emb|CAR40023.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326630330|gb|EGE36673.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 457

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|118594248|ref|ZP_01551595.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophilales bacterium HTCC2181]
 gi|118440026|gb|EAV46653.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophilales bacterium HTCC2181]
          Length = 453

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 116/343 (33%), Gaps = 22/343 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H + +LAV GT GK++  + +  I + +GL+   +       +F+   R+   +      
Sbjct: 101 HDKWVLAVAGTHGKTTTTAMLAWILESNGLAPGYL-IGGVPGNFSSSARIPDNTSKNAPS 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                + +  T    + S       R            NL  DH D     +        
Sbjct: 160 FFVIEADEYDTAFFDKRSKFVHYHPRTL-------ILNNLEFDHADIFDDLEHIKKHVHH 212

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P+    I  A+    +E +K    +     S   +  +   +   +I    Q  
Sbjct: 213 LV-RTIPEHGRIICNAESRALEETIKMGLWSEIEYFSHDKEWSYQWQEDKQSIDIFYQAK 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                K     + L G     NAL A      +G+  A  ++ L     V  R E +   
Sbjct: 272 -----KQGSLTWNLIGHHNASNALAAIAAARHVGVSPAQSIQALSSFKGVKKRMEKIAQL 326

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLA 410
             G +IY D+AH  ++++  LK +        IVV             +     ++L++A
Sbjct: 327 KNGVQIYDDFAHHPSAIQTTLKGLNQTKKSGRIVVVIEPRSNTMKLGSMKTDLLMSLEVA 386

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           D      +N   +       ++  G P  I   + I  I  AI
Sbjct: 387 DQVYCYTNNLTWD-----AHKLFKGYPKAI-VSDNINDIAQAI 423


>gi|239623059|ref|ZP_04666090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239522426|gb|EEQ62292.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 451

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 129/361 (35%), Gaps = 52/361 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +    + I+ +TGT GKS+V S +  I + +G+ +  +G                    
Sbjct: 101 FFQCFRDQIIGITGTKGKSTVTSLLYHILKNAGMDTMILGNIG----------------- 143

Query: 169 YLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
               AL ++   +  T +  E S H L+   +       G   N+  +H+D++ T + Y 
Sbjct: 144 --IPALDHMEEVRPDTKIVFELSCHQLEYMTVS---PHIGILVNIHEEHLDHYGTMEKYV 198

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +F+             DD     V     +  C  + +   G       +     
Sbjct: 199 AAKQNIFKNQKT---------DDILICNVQCLPESGTCPSMLIK-AGVNEPGTDLSVAEE 248

Query: 288 KQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                I   G+ +        L G+   ++  V  G+C  +G+D       L+    +P 
Sbjct: 249 PDGTWIRFRGRAYRIPVDEIRLLGQHNYFDIGVVYGVCAILGMDDGAFTAGLKTYEPLPH 308

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R +++G    G R Y D   T    +  ++ ++T+       V   G DR    R ++  
Sbjct: 309 RLQYLG-ERDGVRYYDDSISTI--CDTTIQALKTLKDTD--TVLIGGMDRGIDYRELIEY 363

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA------IRTAIEMLNK 458
           ++       I+ +        ++I  EI    P F ++   I A      +R A+++   
Sbjct: 364 LSECQVSHIILME-----ATGKRIYQEIYKFYPEFKDRPRLILAEHLEDGVRRAMQITRP 418

Query: 459 Q 459
            
Sbjct: 419 G 419


>gi|168244085|ref|ZP_02669017.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194445921|ref|YP_002043673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194449308|ref|YP_002048459.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194404584|gb|ACF64806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194407612|gb|ACF67831.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337012|gb|EDZ23776.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 457

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|91205696|ref|YP_538051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii RML369-C]
 gi|118595687|sp|Q1RI52|MURD_RICBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91069240|gb|ABE04962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia bellii
           RML369-C]
          Length = 450

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 123/391 (31%), Gaps = 49/391 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  N  I +  +   F              N+LAVTGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVKIAKNFNIPITSDIDLF-------FEKSKGLNLLAVTGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                     +    +  S  G     +E S
Sbjct: 120 ALISHILSDNGLDYPVAGNIG------------------VPVLQAKASKGG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D H+  + Y  AK ++F+  + K+S  II  D+
Sbjct: 159 SFQLDL--VKTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDR-MDKDSYGIINIDN 215

Query: 251 AYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y  E+          +++             +            +  K       L G 
Sbjct: 216 DYCHEIFTNLQQKHHIKLIPFSVTKILEKGISIVNDIITDNFFEHISFKLISNKS-LQGI 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA-HTSNS 368
               N   +  +   IG++   ++E +     +P R +++G          D   +  + 
Sbjct: 275 HNSENIAASYAVARIIGLEPVKIIESISSFQGLPHRMQYLGN-------IDDINFYNDSK 327

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
               +  +++I +   I     G  ++ G   I    +                E     
Sbjct: 328 ASNAIAAVQSIKALDNIYWLAGGIAKEGGIEEIKPYFSKIKKAYFY----GQAKEMFANT 383

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             +II     F+   +  +A   A +   K 
Sbjct: 384 AKDII----DFVICDDLKQAFELAYKDACKD 410


>gi|332083234|gb|EGI88465.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii 5216-82]
          Length = 457

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 118/357 (33%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     +S   + +     S  ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV--IGGVSGNFEVSARLGESDFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|313888463|ref|ZP_07822130.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845492|gb|EFR32886.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 439

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 112/284 (39%), Gaps = 20/284 (7%)

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +V +EASS  L+       K      T +  DH+D+H+T+Q Y +AK ++F+     +
Sbjct: 147 EDYVVIEASSFQLEN--TVDFKPHIAVLTYVTSDHLDWHKTKQNYVDAKFKIFKNQDEND 204

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              + Y D   +++   +A      +     +G ++   K+      +   I ++ KD  
Sbjct: 205 FAILNYEDKELAEKYNLKAEKYYFSMEKTSEKGAYLDQGKIYFTDGDKTEEI-LDVKD-- 261

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG+  + N + A   C  + ID  ++ + +     V  R EFV     G + Y D
Sbjct: 262 --IKIPGDHNIRNIMAAVIACKLLKIDLDVIKKSIVSFTGVEHRIEFV-REVDGVKYYND 318

Query: 362 Y-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                 +S E+ +  +        +V+   G D+      ++ K    L    +      
Sbjct: 319 SKGTNPDSTEVAVAAMD-----GDVVLIAGGYDKGADFDNLIEKSKDKLKTAILF----- 368

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  EKI     +    F    +  +A+  A ++  K D +++
Sbjct: 369 -GQTAEKISNSCKNHGVEFYITEDLKKAVELAKKLAIKGDDVLL 411


>gi|300899372|ref|ZP_07117631.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 198-1]
 gi|300357032|gb|EFJ72902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 198-1]
          Length = 445

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 135 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 195 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 250

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 251 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 309 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 368

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 369 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 424


>gi|16804075|ref|NP_465560.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes EGD-e]
 gi|224501164|ref|ZP_03669471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL R2-561]
 gi|30316084|sp|Q8Y5M1|MURD_LISMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16411506|emb|CAD00114.1| murD [Listeria monocytogenes EGD-e]
          Length = 455

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 105/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +  +  + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQI-ADD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|307637428|gb|ADN79878.1| UDP-N-acetyl muramoyl alanyl-D-glutamyl-2,6-di amino
           pimelate--D-alanyl-D-alanine ligase [Helicobacter pylori
           908]
 gi|325996018|gb|ADZ51423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Helicobacter pylori 2018]
 gi|325997613|gb|ADZ49821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Helicobacter pylori 2017]
          Length = 493

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 139/353 (39%), Gaps = 38/353 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q    +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 E-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L K     +     Y+ +      +    V S+        ++ V +        + 
Sbjct: 277 SKRLEKAFCYSVEKIKPYAPK-----DSPLTDVSSL--------VRNVQSTLKGTSFEML 323

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++     F   + G+F  YN   A  +   +G+++  +   + +L  +  R + +  N +
Sbjct: 324 IDSVWESFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVFELKPINHRLQLLEVNQK 383

Query: 355 GGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+
Sbjct: 384 ---IIIDDSFNGN-LKGMLEGIRLASLHQGRKVIVTPGLVESNTESNEALAQKIDGVFDV 439

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AI+T +     + + I +++ +     ++   ++E I  A  +  + D+++ A
Sbjct: 440 AIITGE----LNSKTIASQLKNPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|281492643|ref|YP_003354623.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376307|gb|ADA65798.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 443

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 99/319 (31%), Gaps = 42/319 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG  +       +  +               
Sbjct: 106 IGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDGTGRGIEGSEYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY +  +   +A  + +   
Sbjct: 155 ----------EYERHFMPYH------PEYTIMTNIDFDHPDYFEGIEDVTSA-FQDYANN 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           + K   A  Y +D   +++  +A      +   G++       + +              
Sbjct: 198 IKKGIFA--YGEDVNLRKLTAKAP-----IYYYGFEANDDYRAENLVRSTRGSSFDAYFR 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F+ P  G+  V NAL    +C  +G+D   V +HL     V  RF         
Sbjct: 251 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTEVADHLLTFRGVKRRFTEKKVGE-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +E  L   R       I+ VF                  LD AD   
Sbjct: 309 TVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLDHADTVY 368

Query: 415 VTDDN--PRSEDPEKIRAE 431
           +       R  D  +I A+
Sbjct: 369 LAQIYGSAREVDHHEITAQ 387


>gi|239617752|ref|YP_002941074.1| UDP-N-acetylmuramate/alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506583|gb|ACR80070.1| UDP-N-acetylmuramate/alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 445

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 129/409 (31%), Gaps = 47/409 (11%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +V ++A S    +   +I    P+L        + L    +      N L+VTGT GK+
Sbjct: 62  VVVHTTAVSRGNPELERSISEGVPLLY------RMELLRKVIA---SRNSLSVTGTDGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + + ++   +G                  +             ++ +          
Sbjct: 113 TTTAMLSKVMIDAGKDPV------VFLGGKSPHLEHGNYRNGEGPIVAEVDESDGFF--- 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            AS   L               TN+  DH++++        A    F + +      I  
Sbjct: 164 -ASFSSLH-----------AIVTNVRGDHLEHYNNSLKNLQAHFHYFAKRI--TGIFIYN 209

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           ADD  SK +       G   ++ G         K      KQ   +         F   L
Sbjct: 210 ADDEASKRLF------GGMGITFGENDGDYRFTKRTCDRTKQSFEVYHGKHSLGRFTLNL 263

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHT 365
           PG   VYNA     +   +GI   +V   L     V  RF F G +  +      DYAHT
Sbjct: 264 PGIHNVYNATAVIAMAAELGIPMDIVKNSLATFKSVDRRFTFRGFSEEKNLYFIDDYAHT 323

Query: 366 SNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            + +   ++    +    +IIVVF         +       +L  AD   V       E 
Sbjct: 324 PDEIRNTIRGAKESYPDRKIIVVFQPHRYSRLARENGRFAASLKSADAVCVYKLYDAYEK 383

Query: 425 PEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEML--NKQDVLVVAGKGH 469
                +  E++ G+  +  +    +     +  L   +  V++  G G 
Sbjct: 384 GRYAVSEVEVLEGLKNYGVESYHADDYNDILNWLDSKRDAVVLFLGAGD 432


>gi|238924607|ref|YP_002938123.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
 gi|238876282|gb|ACR75989.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
          Length = 463

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 16/284 (5%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G T    E SS  L+   +D  K    +  N+  DH++ H T + Y  AK     +    
Sbjct: 167 GETVTVAEISSFQLE--TIDTFKPHVSAILNITPDHLNRHHTMENYIRAK-EDITKNQTA 223

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   ++  +D   ++   +         S     +  +L     I+    V   V   + 
Sbjct: 224 DDYCVLNYEDEVLRDFAAKCPAKVIFFSSKSELSEGFYLDGDIIIYAHDGVRDEVIDVN- 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G+    N + A  + I+ G+    ++E L+    V  R E+V T  RG R Y 
Sbjct: 283 --ELNLLGKHNFENVMAACAMSISFGVPMDKIVEVLKVFKAVEHRIEYV-TEKRGVRFYN 339

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D   T+   +  ++ IR +    +++  G G D+       +      + ++ ++     
Sbjct: 340 DSKGTNP--DAAIQGIRAMNRPTLLI--GGGYDKQSEYDEWIEAFDGKVKELVLIGQTAD 395

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + E+         HG    ++K    +A+    E     D +++
Sbjct: 396 KIEECAH-----RHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLL 434


>gi|169827840|ref|YP_001697998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992328|gb|ACA39868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 464

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 127/352 (36%), Gaps = 25/352 (7%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV   AY        I +   I+ V N  +    F      +    I+A+TGTSGK++ 
Sbjct: 62  VIVTDRAYR----PTEIPTKIIIIQVANVDEAYWKFVHFYRNQFHIPIVAITGTSGKTTT 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ I       +      +T+SS ++           L   L+              
Sbjct: 118 KEMIKHILSADRQVTA-----TTLSSNSR--------TASLQYLLNIEDDTEAAVFETAV 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S G   +     K   G  TN+G  H++Y +T + Y  AK  + + + PK    II A+
Sbjct: 165 GSPGDVTNAGKYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPK-GTLIINAE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D  +K++         R++ VG           +          +    K +D   P  G
Sbjct: 224 DMNTKKL--DISKFNGRLVKVGIHDSCHFRASHIQYYQKGMNFKLHHNRKTYDIFVPGFG 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           + QVYNAL A      IG+   +    L+    +  + +     +    +   ++ T+ S
Sbjct: 282 QHQVYNALAAIAAAYEIGVPIPVAANQLQSFRQLKKQLQLFEGINHSMLLDDTWSITTTS 341

Query: 369 LEMILKNIRTITSG-RIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVT 416
           LE  LK +  +  G + I V G   D            G++   +    ++T
Sbjct: 342 LEAALKVLNELGDGKKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLIT 393


>gi|156973219|ref|YP_001444126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           harveyi ATCC BAA-1116]
 gi|166224769|sp|A7MXR3|MURD_VIBHB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156524813|gb|ABU69899.1| hypothetical protein VIBHAR_00900 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 139/399 (34%), Gaps = 60/399 (15%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V +   +L   +    +    P  VV +      LFA  +     + ++A+TG++G
Sbjct: 69  ADLVVTNPGIALATPEIQEVLAKGAP--VVGDIE----LFAWAVD----KPVIAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL+    G     +                      L  Q     
Sbjct: 119 KSTVTDLTGVMAKAAGLTVGVGGNIGVPA--------------------LDLLEQDADLY 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +KL A +F NL  DH+D ++    Y  AK+R+F+        A+
Sbjct: 159 VLELSSFQLESTL--SLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDN----AELAV 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD       +   +    +++ G   +   L+   A  N+  +    +         
Sbjct: 213 VNRDDQ------ETFPDTETPLVTFGSDEQAYGLE---ADGNRTWLLDHGQRVIASDELK 263

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+  + NALV   L  A  +D    L  L+    +  R + V  N RG +   D   T
Sbjct: 264 LVGKHNLANALVVLALLKAADVDYHKSLNALKTYTGLTHRCQVVADN-RGVKWVNDSKAT 322

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +  +   +  +  + S   + +   G  +     P+    A     +     D       
Sbjct: 323 N--IASTIAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGADG------ 374

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E +             + I+     L   D++++
Sbjct: 375 ----DEFMPLHESATRFDTMEDVIQQISSQLKTGDMVML 409


>gi|114330666|ref|YP_746888.1| UDP-N-acetylmuramate [Nitrosomonas eutropha C91]
 gi|114307680|gb|ABI58923.1| UDP-N-acetylmuramate [Nitrosomonas eutropha C91]
          Length = 460

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 115/369 (31%), Gaps = 25/369 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  L   H   +LAV GT GK++ +S +  I + +GL+   +       +F    RL
Sbjct: 93  QWLAQHLL--HNRWVLAVAGTHGKTTTSSMLAWILEYAGLAPGFL-IGGVPENFGLSARL 149

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                         + +        +       + +    +       NL  DH D    
Sbjct: 150 GHIDGEQTLSPFFVIEADEYDTAFFD------KRSKFVHYQPKTAVLNNLEFDHADIFPD 203

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A       L   ++P+    I+   D   + V+ +       V   G    +      
Sbjct: 204 LAAIERQFHHLV-RIVPRNGLIIVNGCDETLQRVLHQ--GCWTPVEKFGVDEGWQ----- 255

Query: 283 CAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               + Q  +I  +G+      + L GE    NAL A       G+ + L +E L     
Sbjct: 256 ITTEHDQSQSIRFQGEPQGILHWELLGEHNRMNALAALAAARHAGVPAPLGIEALSHFKN 315

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  G       IY D+AH   +++  L  +R       I+               
Sbjct: 316 VKRRMELRGI-IHDIHIYDDFAHHPTAIQTTLAGLRDKIGSARILAVLEPRSNTMKLGVW 374

Query: 402 MGKIA--LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
              +A  L+ AD       +    D       + +      +    I AI TA       
Sbjct: 375 QDSLAASLNQADQVFCYA-HQMGWDVASALTSLSNKADIHHDLSAMISAITTA---AQPG 430

Query: 460 DVLVVAGKG 468
           D +++   G
Sbjct: 431 DHILIMSNG 439


>gi|313901115|ref|ZP_07834603.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium sp. HGF2]
 gi|312954073|gb|EFR35753.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium sp. HGF2]
          Length = 434

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 94/266 (35%), Gaps = 19/266 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K      TN+  DH+DY++  + Y +A    F   + K    +++ DDA  + +     +
Sbjct: 162 KPEYAIITNIELDHVDYYKDMEDYCDA-FEAFANQIQKG--VVLFGDDAAVRSL-----H 213

Query: 263 AGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
                L  G +    +    V    +  Q  +    K F  F  P  G+  ++N+L    
Sbjct: 214 VKTEHLYYGLKDHNDVQAVHVKQHEDGMQFDVLYRKKLFAHFDLPFVGKPLLWNSLGVIA 273

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TI 379
           + I  G+   L+ E L+    V  RF      +       DYAH   +++ +++  R   
Sbjct: 274 IGIMEGLSGELLQEGLQSFPGVKRRFTI--EENGDNVYIDDYAHHPTAVKYMIEAARIKY 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI-RAEIIHGI 436
              ++I +F                  L+ AD   +    +N   ED   I  +++    
Sbjct: 332 PGKKVIALFKPDRYSRIYYFMDRFAEELNQADEVYLCHFPENAAREDGIDITISDLADKC 391

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVL 462
                     EA   A  +  +   +
Sbjct: 392 EKATVINEDEEA---ARMLAQRGPAV 414


>gi|207859563|ref|YP_002246214.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206711366|emb|CAR35744.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 457

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNG 436


>gi|184201130|ref|YP_001855337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila
           DC2201]
 gi|183581360|dbj|BAG29831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila
           DC2201]
          Length = 513

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 128/386 (33%), Gaps = 53/386 (13%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+   +R  G+     L +TGT+GK++       I Q +GL +  +G   T         
Sbjct: 130 LAWRVNRREGRKSPEWLCITGTNGKTTTVGMTASILQAAGLKAVAVGNVGT--------- 180

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                       +       V +  +         H +  +  +A +  N+  DH+D+H 
Sbjct: 181 -----------PILDALRDPVEYDVLAVELSSFQLHWMHSVSPLASAVLNVAEDHVDWHG 229

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           + + Y   K R++E        A +Y  D    E +  A +      +VG+  +   L  
Sbjct: 230 SYENYRADKSRVYEN----TRVACVYNADQPGAEELVEAADVVEGCRAVGFTTQHPGLSM 285

Query: 282 VCAIHN--------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           V  + +          +   + E        P+P    V NAL AA L  A G++   V 
Sbjct: 286 VGVVEDLLVDRAFVADRARTAAELGSVSDTGPIPTRHGVANALAAAALARAAGVEPEAVR 345

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + L   H    R + V        I    A   ++ E  L     +           G  
Sbjct: 346 DGLRAHHPGDHRIQLVAETDGVRWINDSKATNPHAAEASLSAFDPVVW------IAGGLS 399

Query: 394 RDQGKRPIMGKIALDLADIAIVTD--------------DNPRSEDPEKIRAEIIHGIPGF 439
           +      ++ + A  L  + ++                D P          +   G P  
Sbjct: 400 KGVTYDELVARHAQRLRAVVVIGTDDAALLDALARLAPDVPVLHATPGAGPDSAAGDPAD 459

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++  R  A+R A E    QD +++A
Sbjct: 460 GQEAMRR-AVRLAHEHAAAQDTVLMA 484


>gi|118580405|ref|YP_901655.1| Mur ligase middle domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118503115|gb|ABK99597.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379]
          Length = 427

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 132/382 (34%), Gaps = 37/382 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                  +TG+ GK++    V  I + +G +      ++T+ ++  D+           +
Sbjct: 33  PHIPTACITGSVGKTTTCRMVASILRETGKTVA---LSTTLGTYVGDSPRCIGDSSNGRR 89

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
               L+ + V     E +  GL    +       G+  N+  +HI     +     AK++
Sbjct: 90  GSRLLAERQVDAGVFEIARGGLINEGMLFSNYDIGALLNVYDNHIGLKGVESRADLAKVK 149

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-------------- 278
             + ++     AI+ ADD     V K    A   ++++  +   +               
Sbjct: 150 -KQVVVNARKMAILNADDPLCLGVKKDIRAARTCLITMTAESPVVRDHMSRGGVAVRQEG 208

Query: 279 --LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
              + +  ++   ++ +S+   D    +       + NA+ AA +   + + +  +   L
Sbjct: 209 NGAEAMIRLYEGNKMVLSMAALDIPASWGGRYRPAINNAMFAAAITYGLDVSTQSIRAGL 268

Query: 337 EKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
                     PGR  F      G  + + +A    +   I   +   T SG+  ++    
Sbjct: 269 RSFQSDEVSNPGRMNFYDHLPCG--LLITWADGPEAACEIADFVSLHTISGKKHLMLAAM 326

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G+R                D  I TD ++ R   P ++   +  G        +RIE I 
Sbjct: 327 GNRPDAFIVETALAFSGRFDSYISTDWEDLRGRAPGEVAGLLASGFKNGGVDQSRIE-IA 385

Query: 451 T--------AIEMLNKQDVLVV 464
           T        A    ++ D+LV+
Sbjct: 386 TSYDDGLSRAFAKPSQGDLLVI 407


>gi|237729160|ref|ZP_04559641.1| Murein peptide ligase [Citrobacter sp. 30_2]
 gi|226908889|gb|EEH94807.1| Murein peptide ligase [Citrobacter sp. 30_2]
          Length = 458

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 118/363 (32%), Gaps = 38/363 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIYPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVW 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWGLVGEHNMHNGLMAIAAARHVGVVPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVA 465
           AD   +         P  I    AE+             ++A+    ++     D ++V 
Sbjct: 381 ADEVFLLQ-------PPHIPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILVM 433

Query: 466 GKG 468
             G
Sbjct: 434 SNG 436


>gi|110808025|ref|YP_691545.1| putative ligase [Shigella flexneri 5 str. 8401]
 gi|110617573|gb|ABF06240.1| putative ligase [Shigella flexneri 5 str. 8401]
          Length = 440

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 86  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 129

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 130 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 189

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 190 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 245

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 246 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 303

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 304 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 363

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 364 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 419


>gi|16132055|ref|NP_418654.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|89110952|ref|AP_004732.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170083675|ref|YP_001732995.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238903337|ref|YP_002929133.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|3219995|sp|P37773|MPL_ECOLI RecName: Full=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase; AltName: Full=Murein peptide
           ligase
 gi|537075|gb|AAA97130.1| ORF_o457 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790680|gb|AAC77190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|85676983|dbj|BAE78233.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169891510|gb|ACB05217.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863751|gb|ACR65749.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|260450944|gb|ACX41366.1| UDP-N-acetylmuramate [Escherichia coli DH1]
 gi|315138786|dbj|BAJ45945.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli DH1]
          Length = 457

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     +    + +     S  ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV--IGGVPGNFEVSAHLGESDFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|150390641|ref|YP_001320690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017285|sp|A6TS63|MURD_ALKMQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149950503|gb|ABR49031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
          Length = 455

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 107/295 (36%), Gaps = 30/295 (10%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L +     + +E SS  L+   +       G+  NL  DH++ H+T + Y  AK+ LF  
Sbjct: 154 LDTTEEDVIVIEVSSFQLES--IKEFHPKVGTLLNLTPDHLNRHKTIENYREAKLNLFMN 211

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              ++  A++  DD  S+E  K                    + +     + Q +TI  +
Sbjct: 212 QSLQD-YAVLNYDDITSREAGKTLAAQKIYFSR-------KQILEEGVFVDNQLITIQTK 263

Query: 297 GKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            K +D +      + G+  + NAL A  +   +G+ +  + + L     V  R EFV   
Sbjct: 264 EKRYDVIHIDEIKILGQHNLENALAATAMTFILGVSAEDIAKGLRNFPGVAHRLEFV-EE 322

Query: 353 SRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             G +   D   T+   S++ I            I++   G D+       +      + 
Sbjct: 323 IEGVKYINDSKGTNTDASIKAIEAAQAP------IILLAGGQDKGGDFTDFVKAFDGKVK 376

Query: 411 DIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +        E  + I    + +      +  +  EA+  A  +    D +++
Sbjct: 377 HLLVY------GETSDNIYETALHNNFKVVSQVRDLEEAVIRAKGIAQAGDTILL 425


>gi|119944901|ref|YP_942581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
 gi|119863505|gb|ABM02982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
          Length = 445

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 133/396 (33%), Gaps = 50/396 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+ S   +L   +          ++ +   F    +   Y      ++ ++G++GKS+V 
Sbjct: 66  IIASPGIALATPALQFALANGCEIIGDIELFARELSKPAYAH--AKLVTISGSNGKSTVT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + ++   + +     G                        AL  LS + +    +E S
Sbjct: 124 SLLGEMAVAAKIKVAVGGNIG-------------------IPALDLLSPE-IDLYILELS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +     +  N+  DH+D + +   Y  AK RL+++       A+   DD
Sbjct: 164 SFQLE--TTFSLNADIATLLNISEDHMDRYDSYAQYTAAKHRLYQQC----KMALYNRDD 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFPLPG 308
                 +    N      S G+      L         +Q+ ++  G          L G
Sbjct: 218 K-----LTYPKNHSLNKTSFGFD----KLAYGLVTDADKQIFLAKNGSPILAAKQLKLSG 268

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +    N L A  L  A+G+    +   L+    +P R EFV   +    I    A    +
Sbjct: 269 KHNWMNTLAAFALGEAVGLSEIGMFTALQAYSGLPHRCEFVAEINNVRWINDSKATNIGA 328

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  L  +     G + V+   GGD        +  +  ++  + +         D +KI
Sbjct: 329 AQAALLGLSETIPGNVHVIL--GGDGKGADFSELALVLKEIQGMIVC-----FGVDGKKI 381

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A+        +   N  +A+          D++++
Sbjct: 382 AAQ----HKRALLVENLEQAVENIFTTAQAGDLVIL 413


>gi|161723236|ref|NP_268197.2| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|25014077|sp|Q9CE10|MURC_LACLA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|326407576|gb|ADZ64647.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 443

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 99/319 (31%), Gaps = 42/319 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG  +       +  +               
Sbjct: 106 IGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDGTGRGIEGSEYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY +  +   +A  + +   
Sbjct: 155 ----------EYERHFMPYH------PEYTIMTNIDFDHPDYFEGIEDVTSA-FQDYANN 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           + K   A  Y +D   +++  +A      +   G++       + +              
Sbjct: 198 IKKGIFA--YGEDVNLRKLTAKAP-----IYYYGFEANDDYRAENLVRSTRGSSFDAYFR 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F+ P  G+  V NAL    +C  +G+D   V +HL     V  RF         
Sbjct: 251 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTEVADHLLTFRGVKRRFTEKKVGE-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +E  L   R       I+ VF                  LD AD   
Sbjct: 309 TVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLDHADTVY 368

Query: 415 VTDDN--PRSEDPEKIRAE 431
           +       R  D  +I A+
Sbjct: 369 LAQIYGSAREVDHHEITAQ 387


>gi|253681289|ref|ZP_04862087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
 gi|253562527|gb|EES91978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
          Length = 458

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 136/388 (35%), Gaps = 44/388 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V  + +  G  ++  G                    
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYNMLKSQGYKTWVGGNIGNP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  ++ +    V +E SS  L     D         TNL  +H+D H+  + Y N
Sbjct: 156 -LFANIERMTKE--DKVVLELSSFQLMTINEDI---NCALVTNLSPNHLDVHKDMEEYVN 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+    +    ++  D+  + +++  A     +  S+  +       K   +   
Sbjct: 210 AKKNIFKYQ-NENDLLVLNRDNKITNDLVNEAKGR-VKQFSIKEEINNGAYFKNNKLFIL 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +   ++E         L G   V N L A  L     ++  ++ +       V  R EF
Sbjct: 268 DKEVCALE------EVKLKGMHNVENLLAAFCLVHE-DVNVDIMRKVATTFTGVEHRCEF 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V     G + Y D   +S +     + I  + +    V+   GG         + +   D
Sbjct: 321 V-RELDGVKYYNDSIASSPT-----RTIAGLRAFEKPVILIAGGYDKHIPFEPLAEEGYD 374

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG----IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                I+T      E  +K   ++I      IP ++ +G   EAI  A E+    D++  
Sbjct: 375 KIKALILTGVT--KEKIKKAFDDVIKNKQYKIPIYMLEG-FEEAIYKAKEISKMGDIV-T 430

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 +  +  N E + +   +I+  +
Sbjct: 431 LSPACASFDMFANFEIRGNKFKEIVNNL 458


>gi|82546520|ref|YP_410467.1| ligase [Shigella boydii Sb227]
 gi|187734017|ref|YP_001882983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii CDC 3083-94]
 gi|81247931|gb|ABB68639.1| putative ligase [Shigella boydii Sb227]
 gi|187431009|gb|ACD10283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii CDC 3083-94]
 gi|320185327|gb|EFW60099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella flexneri CDC
           796-83]
 gi|332087042|gb|EGI92176.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii 3594-74]
          Length = 457

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|229528610|ref|ZP_04418000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
 gi|229332384|gb|EEN97870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
          Length = 467

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 138/397 (34%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 96  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 147

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 148 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 188 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 241

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A D  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 242 AYDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 296 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 354 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 404

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 405 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|323575264|emb|CBY88822.1| hypothetical protein [Staphylococcus aureus]
          Length = 348

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 21/283 (7%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           + +   ++  TP LV++++   L+  A  +  ++   ++A+TG+ GKSS    +    + 
Sbjct: 81  ETYVPDMKFKTPQLVINDSANTLTKLAEEMRLQYKHPVVAITGSMGKSSTRMLISAGLK- 139

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--H 197
                           +   NR        +   L  +  Q      +E S + L+   +
Sbjct: 140 --------------DYYPLQNRFNNNIRSAVYLLLCKMIRQP-NFAVLEVSLNALNAVGN 184

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               IK      T +G  H+   +        K  +F+ L P E  AII  D  +S  ++
Sbjct: 185 SSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTP-EGVAIINKDTLHSDILI 243

Query: 258 KRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +RA      V++         I  K +        +TI   G+ + +      +  V N+
Sbjct: 244 ERAKQNTSNVITYSTHDSSATICPKSIQYSKGYTVITIDFNGQKYTYRINSISDGMVENS 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           L        + I     LE+L                +   ++
Sbjct: 304 LATFATLSHLDIPLERALENLSTFKPFEKVLNLKEVETPNYKV 346


>gi|315586591|gb|ADU40972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Helicobacter pylori 35A]
          Length = 493

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 139/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  Q     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +F   + G+F  YN   A  +   +G+++  +   + + + +  R + +  N + 
Sbjct: 325 GSVWENFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|293407957|ref|ZP_06651797.1| ligase [Escherichia coli B354]
 gi|301024464|ref|ZP_07188143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 69-1]
 gi|291472208|gb|EFF14690.1| ligase [Escherichia coli B354]
 gi|300396577|gb|EFJ80115.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 69-1]
 gi|332748971|gb|EGJ79394.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-671]
 gi|332749250|gb|EGJ79671.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 4343-70]
          Length = 445

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 135 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 195 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 250

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 251 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 309 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 368

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 369 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 424


>gi|6332754|dbj|BAA86636.1| hypothetical protein [Staphylococcus aureus]
          Length = 350

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 21/283 (7%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           + +   ++  TP LV++++   L+  A  +  ++   ++A+TG+ GKSS    +    + 
Sbjct: 81  ETYVPDMKFKTPQLVINDSANTLTKLAEEMRLQYKHPVVAITGSMGKSSTRMLISAGLK- 139

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--H 197
                           +   NR        +   L  +  Q      +E S + L+   +
Sbjct: 140 --------------DYYPLQNRFNNNIRSAVYLLLCKMIRQP-NFAVLEVSLNALNAVGN 184

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               IK      T +G  H+   +        K  +F+ L P E  AII  D  +S  ++
Sbjct: 185 SSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTP-EGVAIINKDTLHSDILI 243

Query: 258 KRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +RA      V++         I  K +        +TI   G+ + +      +  V N+
Sbjct: 244 ERAKQNTSNVITYSTHDSSATICPKSIQYSKGYTVITIDFNGQKYTYRINSISDGMVENS 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           L        + I     LE+L                +   ++
Sbjct: 304 LATFATLSHLDIPLERALENLSTFKPFEKVLNLKEVETPNYKV 346


>gi|329297059|ref|ZP_08254395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Plautia stali symbiont]
          Length = 451

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 120/362 (33%), Gaps = 36/362 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A    +I +  GL    I     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMAARILEACGLEPGFI--IGGLPGNFDVSAKLGKSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLRAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   ++   D   K+VM  A        SVG  G++   K V    +  +    
Sbjct: 209 -RIVPGQGKILLPEHDHNIKQVM--AMGCWSEQESVGDNGRWQANKLV---PDASRWEAW 262

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G+   +  + L GE  ++N L+A      +G+      E L        R E  G   
Sbjct: 263 LDGEKVAEVNWALVGEHNMHNGLMAIAAARHVGVKPCDAGEALNSFINGRRRLELRG-EV 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDLA 410
              ++Y D+AH   ++   L  +R+   G   I+                 ++A  L  A
Sbjct: 322 NAIKVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGVSKSELAPSLGRA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAG 466
           D   +         P  I  ++       I+  +    I T +EM        D ++V  
Sbjct: 382 DEVFLFQ-------PHHIPWQVADVAEACIQPAHWSADIDTLVEMVAKAAQPGDSILVMS 434

Query: 467 KG 468
            G
Sbjct: 435 NG 436


>gi|317180502|dbj|BAJ58288.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F32]
          Length = 493

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 139/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  Q     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   + G+F  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 GSVWESFETKVLGKFNAYNIASAVLIAKHLGLETERIKRLVWELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|332095379|gb|EGJ00402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           5216-82]
          Length = 438

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 161/451 (35%), Gaps = 82/451 (18%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ-----------GAEAIVVSSA 76
           R +  +  D+R                 G   +P+A+ +            A+ IV S  
Sbjct: 28  RGVTPLVMDTRMTPP-------------GLDKLPEAVERHTGSLNDEWLMAADLIVASPG 74

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            +L   S +  ++  I +V +   F          +    I+A+TG++GKS+V + V ++
Sbjct: 75  IALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKSTVTTLVGEM 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +                     +     I L   +  L         +E SS  L+ 
Sbjct: 127 AKAA------------------GGNVGVGGNIGLPALM--LLDDECELYVLELSSFQLE- 165

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++ ADDA +  
Sbjct: 166 -TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVVNADDALTMP 220

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVY 313
           +      A  R +S G      HL      H + +  + V+G+    +    L G+    
Sbjct: 221 I----RGADERCVSFGINMGDYHLN-----HQQGETWLRVKGEKVLNVKEMKLSGQHNYT 271

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    S E  L
Sbjct: 272 NALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAAL 331

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +     G + ++   G  +     P+   +  D   +     D         +R E+ 
Sbjct: 332 NGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQLAALRPEVA 385

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +     +A+R     +   D++++
Sbjct: 386 E------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|291525273|emb|CBK90860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale DSM 17629]
          Length = 453

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 103/284 (36%), Gaps = 16/284 (5%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G T    E SS  L+   +D  K    +  N+  DH++ H T + Y  AK     +    
Sbjct: 157 GETVTVAEISSFQLE--TIDTFKPHVSAILNITPDHLNRHHTMENYIRAK-EDITKNQTA 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   ++  +D   +              S     +  +L     I+    V   V   + 
Sbjct: 214 DDYCVLNYEDEVLRNFAAECPAKVIFFSSRSELSEGFYLDGDIIIYAHDGVRDEVIDVN- 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G+    N + A  + I+ G+    ++E L+    V  R E+V T  RG R Y 
Sbjct: 273 --ELNLLGKHNFENVMAACAMSISFGVPMDKIVEVLKVFKAVEHRIEYV-TEKRGVRFYN 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D   T+   +  ++ IR +    +++  G G D+       +      + ++ ++     
Sbjct: 330 DSKGTNP--DAAIQGIRAMNRPTLLI--GGGYDKQSEYDEWIEAFDGKVKELVLIGQTAD 385

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + E+         HG    ++K    +A+    E     D +++
Sbjct: 386 KIEECAH-----RHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLL 424


>gi|271964372|ref|YP_003338568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
 gi|270507547|gb|ACZ85825.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
          Length = 465

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 123/380 (32%), Gaps = 55/380 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL        LA+TGT+GK++V   +  +   +G ++  +G   T           
Sbjct: 92  ELAWRLRPAGAAPWLALTGTNGKTTVVRMLTSMLTAAGHAALAVGNVGT----------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                     +    +     ++VE SS  L  HR   +     +  N+  DH+D+H + 
Sbjct: 141 ---------PVVEAVTGPADVLAVELSSFQL--HRSPSLAPHTAAVLNVAPDHLDWHGSL 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKV 282
           + Y   K  +F          +  ADD +S  +        G R +             V
Sbjct: 190 EEYARVKGEIFTR----AGTVVHNADDEWSARLAAPYDGGTGARSVGFTLGVPAPGQVGV 245

Query: 283 CAIHNKQQVTISVEGKDFDFLFPL-----PGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                  +  ++   +  + L             V NAL AA +  + G+ +  V + L 
Sbjct: 246 VEDLLVDRAFVADPARHAEELASFDDIRPFAPHNVANALAAAAMARSYGVPAEAVRQGLL 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                P R   V     G   YVD +  +N          ++ +   IV    G  +   
Sbjct: 306 DFVPDPHRMARVA--RVGEVDYVDDSKATNP----HAAAASLAAYPSIVWIAGGQLKGAD 359

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---------NRIEA 448
              ++ + A  L    ++  D  R      IR  +                    +R+  
Sbjct: 360 VDDLVRRAAPRLRGAVLLGADRER------IRQALARHAANVPVVEVAGQDTGVMDRV-- 411

Query: 449 IRTAIEMLNKQDVLVVAGKG 468
           +  A  +    D +++A  G
Sbjct: 412 VIEAARLAAPGDTVLLAPAG 431


>gi|218707842|ref|YP_002415361.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|293402858|ref|ZP_06646955.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1412]
 gi|298378386|ref|ZP_06988270.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1302]
 gi|218434939|emb|CAR15878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|291429773|gb|EFF02787.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1412]
 gi|298280720|gb|EFI22221.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1302]
          Length = 457

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|73662897|ref|YP_301678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|122063263|sp|Q49WW5|MURD_STAS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72495412|dbj|BAE18733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 449

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 116/350 (33%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ VTGT+GK++V S +  + Q+S ++    G    ++S          +  YL   L
Sbjct: 111 APIIGVTGTNGKTTVTSLIGDMFQKSRVTGKLSGNIGYVASK---VAQEVTADDYLVTEL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G+                    K      TN+   H+DYH+T   Y NAK +++
Sbjct: 168 SSFQLLGIDQY-----------------KPHIAIITNIYSAHLDYHETLDNYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                K      Y    Y +  +  +     +      Q +   +         +   I 
Sbjct: 211 -----KNQTENDYLICNYHQRHLIESETLRAKTYYFSTQQEVDGIYVKDDYIVFKGFRII 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         LPGE  + N L A    +  GI    +++ L     +  R +++GTN  
Sbjct: 266 HKD-----DLVLPGEHNLENILAAVLAALLSGISVKAIIDSLTSFSGIEHRLQYIGTNKT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               Y + +  +N+L      + +     I +  G     D  +     K    +     
Sbjct: 321 NK--YYNDSKATNTLATQF-ALDSFKQPIIWLCGGLDRGNDFDELIPHMKNVRMMVAF-- 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E  EK            I   +  +A+     ++   DV+++
Sbjct: 376 -------GETKEKFIKLGESQGKYVITANDVQDAVDKIQSVIEPNDVVLL 418


>gi|300950241|ref|ZP_07164180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 116-1]
 gi|300957152|ref|ZP_07169391.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 175-1]
 gi|300316096|gb|EFJ65880.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 175-1]
 gi|300450431|gb|EFK14051.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 116-1]
          Length = 445

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 135 ARLGESNFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 195 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 250

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +GI  A     L        R E  G  
Sbjct: 251 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGIAPADAANALGSFINARRRLELRG-E 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 309 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 368

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 369 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 424


>gi|12725089|gb|AAK06138.1|AE006433_8 UDP-N-acetylmuramate-alanine ligase [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 457

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 99/319 (31%), Gaps = 42/319 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG  +       +  +               
Sbjct: 120 IGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDGTGRGIEGSEYFVFESD----------- 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY +  +   +A  + +   
Sbjct: 169 ----------EYERHFMPYH------PEYTIMTNIDFDHPDYFEGIEDVTSA-FQDYANN 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           + K   A  Y +D   +++  +A      +   G++       + +              
Sbjct: 212 IKKGIFA--YGEDVNLRKLTAKAP-----IYYYGFEANDDYRAENLVRSTRGSSFDAYFR 264

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F+ P  G+  V NAL    +C  +G+D   V +HL     V  RF         
Sbjct: 265 GEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTEVADHLLTFRGVKRRFTEKKVGE-- 322

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +E  L   R       I+ VF                  LD AD   
Sbjct: 323 TVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLDHADTVY 382

Query: 415 VTDDN--PRSEDPEKIRAE 431
           +       R  D  +I A+
Sbjct: 383 LAQIYGSAREVDHHEITAQ 401


>gi|284802483|ref|YP_003414348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5578]
 gi|284995625|ref|YP_003417393.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5923]
 gi|284058045|gb|ADB68986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5578]
 gi|284061092|gb|ADB72031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5923]
          Length = 455

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-TDD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|300818544|ref|ZP_07098753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 107-1]
 gi|300916600|ref|ZP_07133322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 115-1]
 gi|300922863|ref|ZP_07138946.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 182-1]
 gi|300928056|ref|ZP_07143606.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 187-1]
 gi|300987091|ref|ZP_07177998.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 45-1]
 gi|300988332|ref|ZP_07178628.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 200-1]
 gi|301048563|ref|ZP_07195580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 185-1]
 gi|301329268|ref|ZP_07222245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 78-1]
 gi|301646689|ref|ZP_07246552.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 146-1]
 gi|309792871|ref|ZP_07687299.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 145-7]
 gi|312965914|ref|ZP_07780140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|300299607|gb|EFJ55992.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 185-1]
 gi|300305950|gb|EFJ60470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 200-1]
 gi|300407786|gb|EFJ91324.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 45-1]
 gi|300416112|gb|EFJ99422.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 115-1]
 gi|300420812|gb|EFK04123.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 182-1]
 gi|300463903|gb|EFK27396.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 187-1]
 gi|300528948|gb|EFK50010.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 107-1]
 gi|300844428|gb|EFK72188.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 78-1]
 gi|301075097|gb|EFK89903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 146-1]
 gi|308123157|gb|EFO60419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 145-7]
 gi|312289157|gb|EFR17051.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|315288404|gb|EFU47802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 110-3]
 gi|315298998|gb|EFU58252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 16-3]
 gi|324005176|gb|EGB74395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 57-2]
 gi|324013743|gb|EGB82962.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 60-1]
          Length = 445

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 135 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 195 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 250

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 251 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 309 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 368

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 369 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 424


>gi|134298541|ref|YP_001112037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum reducens MI-1]
 gi|189082878|sp|A4J2A9|MURD_DESRM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134051241|gb|ABO49212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
           reducens MI-1]
          Length = 456

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 102/281 (36%), Gaps = 24/281 (8%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+    +          NL  DH+D H + + Y  AK  +F    P +   ++ 
Sbjct: 163 EVSSFQLE--TTEYFAPKVAVMLNLTPDHLDRHGSMEEYIKAKSCIFIHQKPSD-YVVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            DD   +E+   A +   +V+    Q    H+ +  +     ++ +S +G   + +    
Sbjct: 220 YDDLALREL---AKSCPSQVIFFSRQ----HIIEKGSFIQNDKIMVSGKGGPEEVIDVNA 272

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   + NAL A      +G+    +   L +   V  R EFV   +    +     
Sbjct: 273 LRIPGPHNLENALAATAAAYTLGLSPRDIAGTLGRFTGVAHRLEFVANINGVEYVNDSKG 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++    L++         I++   G ++         KI   +    ++T      +
Sbjct: 333 TNPDAAIKALESYDA-----PIILIAGGKNKGISFNDFAKKIKEKV--RVLITLGVHGYQ 385

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E  R +   G        +  +A++ A +     +++++
Sbjct: 386 IEEAAREQ---GFTNIYPVEDYAQAVQLARKQAKPGEIVLL 423


>gi|325838528|ref|ZP_08166550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490823|gb|EGC93125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 459

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 113/355 (31%), Gaps = 26/355 (7%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VV              S   ++ V +       F           ++AVTGTSGK++ 
Sbjct: 63  AVVVDREVK----ELKKISGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVAVTGTSGKTTT 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ I               T+       R    +P  L   L    S          
Sbjct: 119 KDMIKHILST------WYKVEGTV-------RSANGNPRNLIYLLRIDDSIQAAVYESAV 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            + G   +         G  TN+G DH++  +T Q Y NAK  +   ++P+    I+ AD
Sbjct: 166 GAPGDITYTCSHFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVS-VIPEGGTLILNAD 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D   K +          ++  G           +   +N    T+++    +    P  G
Sbjct: 225 DEKIKTI--DTSKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           + QVYNAL A      +GI      + L    ++    E     ++   I   +   + S
Sbjct: 283 KHQVYNALAALAATHEMGIGITQAAQALSSFKLLMNHCEIKKGLNQATIIDDTWNINTAS 342

Query: 369 LEMILKNIRTITSGRIIVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTDD 418
           L+  +  +  +      V         G       + +   IA    D  I   D
Sbjct: 343 LKAAMNTLCELNQQHKKVALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGD 397


>gi|92116833|ref|YP_576562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           hamburgensis X14]
 gi|118595668|sp|Q1QNU5|MURD_NITHX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91799727|gb|ABE62102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           hamburgensis X14]
          Length = 466

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 111/320 (34%), Gaps = 38/320 (11%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V++    L      +S        + V+ +   F    A           +A+TGT+
Sbjct: 67  AALVLAPGVPLTHPKPHWSVLAARQAGVEVIGDIELFCRERARHA---PDAPFVAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + V  + + +G      G   T                     LS    +    
Sbjct: 124 GKSTTTALVAHLMREAGHDVQMGGNIGT-------------------AILSLEPPRKGRV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ +D      +    G   N+  DH+D H T + Y   K RL   + P    A
Sbjct: 165 HVIEMSSYQIDL--TPSLDPTVGILLNVSPDHLDRHGTIEHYAAVKERLIAAVQPH-GTA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  DD +S+    R   AG RV+ V        G  +   ++       Q  I+  G  
Sbjct: 222 VVGVDDIWSRTAADRIEQAGKRVVRVSVKRPLADGISVDHDRIVRASGGAQAEIADIGGI 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                   G     NA  A+   +A+G+   ++ + L     +  R E VG  +    + 
Sbjct: 282 GSLR----GRHNAQNAACASAAALALGVGRDILQQDLRSFPGLAHRMEQVGRKANVLFVN 337

Query: 360 VDYAHTSNSLEMILKNIRTI 379
                 +++ E  L +   I
Sbjct: 338 DSKGTNADATEKALSSFAEI 357


>gi|94501144|ref|ZP_01307667.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanobacter sp. RED65]
 gi|94426720|gb|EAT11705.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanobacter sp. RED65]
          Length = 456

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 122/365 (33%), Gaps = 41/365 (11%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AV GT GK++  S +  + +  G     +     I    ++  ++           + 
Sbjct: 105 VMAVAGTHGKTTTTSMLAWVLEDCGFQPGFL-----IGGVPKNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLI--AGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L       V  +         R   +          N+  DH D  +   A    +    
Sbjct: 149 LGESDFFVVEADEYDSAFFDKRSKFVHYHGRTVILNNMEFDHADIFKDLDAI-KTQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P E   I  A+DA  K  +    + GC   +V   G +    +    H    V   
Sbjct: 208 VRTIPSEGQIIFPANDANIKSTL----DMGCWTPTVTLGGDW----RAELKHVSGSVFEV 259

Query: 295 VEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G+    +  +   G+  V NAL        +GI     +  L +   V  R E +  +
Sbjct: 260 YQGEQLVGEVRWKQTGQHNVNNALACIAAAHHVGILPKDSIAALNRFVGVKRRMELI-CD 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRII--VVFGCGGDRDQGKRPIMGKIALDLA 410
           ++  +IY D+AH   ++E  L  +      + I  V+         G        A++ A
Sbjct: 319 AKEVKIYDDFAHHPTAIESTLAGMANSGEFKRIRAVIEPRSNTMRMGVHKAELPKAVEQA 378

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEA-IRTAIEMLNKQDVLV 463
           D  I       + D E +  +    IP  +         + I+A I   ++     D +V
Sbjct: 379 DEIIWFQPKGLNWDMENVVEQC--NIPNRVNDEPKSVLFDDIDAIIAHLVQTSEPGDGIV 436

Query: 464 VAGKG 468
           +   G
Sbjct: 437 LMSNG 441


>gi|325275007|ref|ZP_08141002.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas sp. TJI-51]
 gi|324099856|gb|EGB97707.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas sp. TJI-51]
          Length = 312

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 92/278 (33%), Gaps = 38/278 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAT--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG   T +        +          +
Sbjct: 119 --VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTSRY-------LI 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + +                ++ +    TN+  DH+  ++            F
Sbjct: 170 AEADESDASFL---------------HLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT- 292
              LP    A++  DD   +E++ +        ++ G+ +   I    V     +   T 
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRP---TVTYGFSEEADIRAINVRQQGMQTHFTV 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           +  + +  D    +PG   V NAL    +    GI   
Sbjct: 272 LRRDCEPLDVSVNMPGNHNVLNALATIAIATDEGITDE 309


>gi|306820978|ref|ZP_07454597.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550919|gb|EFM38891.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 448

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 94/269 (34%), Gaps = 20/269 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +++  G+  N+  DH++ H+T + Y  AK R+  E    +   I+  DD        
Sbjct: 169 ITDLRVHIGAILNITPDHLERHKTFEEYKKAKYRI-AENQSSDDFLILNKDDKEID---- 223

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNAL 316
              N   +V+    + K        +       ++  + ++        L G+  V N L
Sbjct: 224 -IKNVKSKVIYFSMKEKLEDGVYYDSERQAIISSLFSKNQEIIKRGDINLLGDHNVENTL 282

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  + ++  I   ++ + ++    V  R + V        +        +S    LK +
Sbjct: 283 AAIAIALSDNIPVEIIRQGIKNFVAVKHRLQLVRKIGDVSYVNDSKGTNVDSTVKALKAV 342

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHG 435
                   I++   G D+      ++      +  + +        E   KIR   + +G
Sbjct: 343 -----NTDIILIAGGYDKHVDFDEVIKAFDGKVKSLLLF------GETKYKIRDTALKYG 391

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   N  + ++ A E+    D +++
Sbjct: 392 FDKIHIFDNLKDCVQKAYELSENNDTVLL 420


>gi|187930094|ref|YP_001900581.1| UDP-N-acetylmuramate [Ralstonia pickettii 12J]
 gi|187726984|gb|ACD28149.1| UDP-N-acetylmuramate [Ralstonia pickettii 12J]
          Length = 461

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 137/418 (32%), Gaps = 38/418 (9%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F P+ ++ GA+  V+ +  S  +    A +  N P +               +  +  + 
Sbjct: 53  FDPEQLSIGADLYVIGNVISRGNALMEAILDRNLPYI------SGPQWLGDNVLRQ--KW 104

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++  S +  I Q +G +   +     +    ++  L+           + 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILQDAGYNPGFL-----VGGVPRNFGLS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTESDFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P +   ++   +   K V++R       V   G +G      +V  + +     + 
Sbjct: 208 VRTVPGQGRLLVNGREDSLKRVLER--GCWSEVEQFGAEGNLGW--EVENLADDDSFDVV 263

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G+      + L G+    NAL A      +G+  A  +E L +   V  R E  GT  
Sbjct: 264 FQGQTQGRVRWALQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-V 322

Query: 354 RGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
               +Y D+AH   ++   ++   R +  GRI+ V          G   +    +L  A+
Sbjct: 323 NDVTVYDDFAHHPTAIRTTIEGLRRRVGKGRILAVLEPRSNTMKLGVMKLALPDSLSGAE 382

Query: 412 IAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   N R      +   +           +    I          D ++V   G
Sbjct: 383 QIFAYGAANGRDALGWDLAGALAPLGERAKTFSDLSALIEAVTAAARPGDHVLVMSNG 440


>gi|83815787|ref|YP_445056.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salinibacter ruber DSM 13855]
 gi|83757181|gb|ABC45294.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salinibacter ruber DSM 13855]
          Length = 491

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 99/278 (35%), Gaps = 19/278 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  +   T+L  DH D    +  Y  A    F   LP++    +  D    + +   A +
Sbjct: 204 RPQSAIVTSLEFDHADIFVDRDDYRGA-FEEFVGRLPRDGQLALCGDAPAVRAL---ADH 259

Query: 263 AGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V + G      I  + +    +    T+ +     +   PLPG   V NAL AA L
Sbjct: 260 TRAPVRTYGLAPSNDIRAEALTPTGSGLSFTLRMGRHREEVRLPLPGRHNVQNALAAALL 319

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TIT 380
               G+  + +   L        R + V        +  D+AH   ++   ++ +R    
Sbjct: 320 ARREGVSPSTIAAGLASFGG-MKRRQQVRGRPNDVLVVDDFAHHPTAVAATVEALRAAHP 378

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVT-------DDNPRSEDPEKIRAEI 432
             R++ +F    +  +  R       A D AD   +        DD     DP  +   I
Sbjct: 379 DRRLVAIFEPRSNTSRRTRFEAAYGTAFDAADRVFLKAPPVRHNDDADAMLDPTAVAHTI 438

Query: 433 I-HGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
              G+P  + +   ++A+  T  + L   DV ++   G
Sbjct: 439 RDRGVPAEVFED--VDAVLPTLTDTLQPGDVALLMSNG 474


>gi|24115458|ref|NP_709968.1| putative ligase [Shigella flexneri 2a str. 301]
 gi|30065479|ref|NP_839650.1| putative ligase [Shigella flexneri 2a str. 2457T]
 gi|157163707|ref|YP_001461025.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli HS]
 gi|24054776|gb|AAN45675.1| putative ligase [Shigella flexneri 2a str. 301]
 gi|30043743|gb|AAP19462.1| putative ligase [Shigella flexneri 2a str. 2457T]
 gi|157069387|gb|ABV08642.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli HS]
 gi|281603567|gb|ADA76551.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Shigella flexneri 2002017]
 gi|313646431|gb|EFS10893.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2a str. 2457T]
 gi|323171673|gb|EFZ57319.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli LT-68]
 gi|332763144|gb|EGJ93387.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2930-71]
 gi|333009274|gb|EGK28730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-218]
 gi|333011919|gb|EGK31304.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-304]
 gi|333012112|gb|EGK31494.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-227]
          Length = 457

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|253689955|ref|YP_003019145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756533|gb|ACT14609.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 438

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 142/400 (35%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALATPILCDAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLPA--------------------LQLLEQPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH + +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEH----ADLCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R  S G      HL +      + +  + V+G+        
Sbjct: 212 NADDALTMPV----RGADARCRSFGVDVGDYHLNR-----QQGETWLRVDGERVLNTREI 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+ I  A  L  L     +P RF+    ++    I    A 
Sbjct: 263 KLVGQHNYTNALAALALADAVKIPRASALTALTTFAGLPHRFQMAFEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P++  +  +   +     D    + 
Sbjct: 323 NVGSTEAALSGLT--VEGTLHLLL-GGDGKSADFSPLVPYLQGEHIRLYCFGRD---GQQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     +A+R   E +   D++++
Sbjct: 377 LAALRPEIAE------QTETMEQAMRVIAERVKPGDMVLL 410


>gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 453

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 115/318 (36%), Gaps = 43/318 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  N  I +  +                  N +AVTGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSRIL-------NFIAVTGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                     ++   +  S  G     +E S
Sbjct: 120 ALISHILNSNGLDYPVAGNIG------------------VSALRAKASKDG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+  + K+S A+I  D+
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMTGYIAAKSKIFDR-MDKKSYAVINIDN 215

Query: 251 AYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y +++ M        +++         +   V     K    IS +     F   L G 
Sbjct: 216 DYCRKIFMLLQQEQRIKLIPFSVTKILENGILVVDDKIKDN-DISYK---LSFNKNLQGL 271

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N   +  +   IG++   ++E +     +P R +++G+ +     + + +  +N++
Sbjct: 272 HNYENIAASYAVAKIIGVEPKKIIESISSFQSLPHRMQYIGSINNIS--FYNDSKATNAI 329

Query: 370 EMI-----LKNIRTITSG 382
             +     L NI  +  G
Sbjct: 330 SAVQSIKALDNIYWLAGG 347


>gi|330973389|gb|EGH73455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 448

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 122/350 (34%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T                    AL
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGT-------------------PAL 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             LS + V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 150 DLLSDE-VELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++  +  
Sbjct: 259 FENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLREHEG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    +    ++ + +   G+++++   G  +      +   +A       +
Sbjct: 319 VDYYNDSKATNVGAALAAIEGLGSDIDGKLVLI-AGGDGKGADFSGLRAPVARHCRAAVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D E I   +   +   +       A+  + ++  + D +++
Sbjct: 378 L------GRDAELIAQALGDAV-ALVRVDTVQAAVEHSAKLAQRGDAVLL 420


>gi|217963819|ref|YP_002349497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes HCC23]
 gi|217333089|gb|ACK38883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes HCC23]
 gi|307571610|emb|CAR84789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes L99]
          Length = 455

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 105/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ADD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGARD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A    +  D++++
Sbjct: 381 ETADKIGRVGKIAGID--VHYVDNVEAAVPVAYRESSPGDIILL 422


>gi|110634359|ref|YP_674567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mesorhizobium
           sp. BNC1]
 gi|118595664|sp|Q11GS3|MURD_MESSB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110285343|gb|ABG63402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chelativorans sp.
           BNC1]
          Length = 467

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 111/309 (35%), Gaps = 39/309 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    +S  +  +  + ++ +   F+     R++  H   ++A+TGT+GKS+  +    +
Sbjct: 79  HPHPHWSVELARSAGVEIIGDIELFVRE--RRMHAAH-APLVAITGTNGKSTTTALTAHV 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G  +   G                         ++        H  +E SS+ +D 
Sbjct: 136 LKAAGRDTQMGGNIG-------------------RAVMTLDPPVADRHYVLECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   N+  DH+D H T + Y   K RL          AII  DD Y + V
Sbjct: 177 S--PTLNPTAGVLLNITPDHLDRHGTMENYAAIKERLVAG----SDTAIIGVDDEYCRAV 230

Query: 257 MKRAHNAGCRVLSVGYQGKFIH------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             R   AG +V  +   G           +   A   K +   S+EG     +  L G  
Sbjct: 231 ADRLEKAGRKVSRISLTGTLEDGFFADGTQLFRAGQGKAEPLFSLEG-----IGSLRGRH 285

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL AA  C+A G+  A +         +  R E VG       +    A  +++  
Sbjct: 286 NAQNALAAAAACLACGLSPAEIQTGFRSFPGLAHRMEQVGKLGHVLFVNDSKATNADASA 345

Query: 371 MILKNIRTI 379
             L +   I
Sbjct: 346 PALSSFPRI 354


>gi|167469961|ref|ZP_02334665.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis FV-1]
          Length = 423

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 94/270 (34%), Gaps = 20/270 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +      +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV--IGGVPGNFDVSARLGNSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y  +           S                   NL  DH D     +A       
Sbjct: 159 ADEYDCAFFDKRSKFVHYS------------PRTLIMNNLEFDHADIFDDIKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P +   I+  +D + K+VM  A         VG  G +   +KV    +  +V 
Sbjct: 207 LV-RLVPGKGKIILPDNDNHLKQVM--AMGCWSEQELVGETGSWF-ARKVSTDASVYEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LD-NNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + G  +Y D+AH   ++   L  +R+   G
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGG 350


>gi|330895234|gb|EGH27572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 128

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 6/114 (5%)

Query: 41  QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK 100
           + G +F+A+ G   DG   I  A+ +GA A+    AY ++       ++ P++ V     
Sbjct: 2   RPGDLFLAVPGINVDGRAHIADALKRGAAAV----AYEVEGSIVLPITDVPLIPVKGLAA 57

Query: 101 FLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            LS  A R YG      N++ VTGT+GK+SV   V Q     G     +G   T
Sbjct: 58  QLSAIAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVGTLGT 111


>gi|215403429|ref|ZP_03415610.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           02_1987]
          Length = 362

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 113/331 (34%), Gaps = 52/331 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----SLFASRLYGKHPENILAVT 121
           GA A+V + A         I    P LV    R        ++ A  + G+     L VT
Sbjct: 59  GATAVVTTHA--------AIPKTNPELVEARRRGIPVVLRPAVLAKLMAGR---TTLMVT 107

Query: 122 GTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++  S +    Q  G   SF +G    +     +    +                
Sbjct: 108 GTHGKTTTTSMLIVALQHCGLDPSFAVG--GELGEAGTNAHHGSGD-------------- 151

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  + S   L Q+            TN+  DH+D++ + +AY  A    F E +  
Sbjct: 152 -CFVAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVP 204

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQV-------- 291
               ++  DD     + +RA   G RVL  G   G+ +    V                 
Sbjct: 205 GGALVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLAS 264

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++           +PG     NAL A    + IG  +  VL+ L     V  RFE VGT
Sbjct: 265 ELATAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGT 324

Query: 352 NSRG---GRIYVDYAHTSNSLEMILKNIRTI 379
              G    R++ DYAH    +   L   R +
Sbjct: 325 CGVGKASVRVFDDYAHHPTEISATLAAARMV 355


>gi|262045339|ref|ZP_06018363.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037257|gb|EEW38504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 457

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 121/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+  +D   K+VM  A         VG QG     KK+ A  ++ +V + 
Sbjct: 209 -RIVPGKGKIILPENDINLKQVM--AMGCWSEQEQVGEQG-HWQAKKLNADASQWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
           G  +Y D+AH   ++   L+ +R    G   I+                  +A  L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++  +    + T  EM     +  D ++V   
Sbjct: 383 EVFLLQ-------PQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|119487890|ref|ZP_01621387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
 gi|119455466|gb|EAW36604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
          Length = 458

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 130/387 (33%), Gaps = 35/387 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS           I  +  I +V                 +    + +TGT+GK++  
Sbjct: 67  VVVSPGVPWDIPPLEIARHRGIEIV-------GEMELAWRNLNAVPWVGITGTNGKTTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I + +GL++   G    I + A +  L       L          G +   V A 
Sbjct: 120 ALIAAIFKAAGLNAPACG---NIGNAACELALEQQEIRAL--------KIGKSVDWVIAE 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +    G +T    DH++ H T + Y+N K +L    L      +I  DD
Sbjct: 169 VSSYQIESSSTLAPKIGVWTTFTPDHLNRHHTLENYYNIKAKL----LKNSEIQVINGDD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGE 309
            Y ++   +     C     G     +       ++ +    I  + K        + G+
Sbjct: 225 PYLRQNADQEWKNACWTSVQGKSK--LIGNPDLGVYIENDYIIQNQQKIIPLKTLKMVGK 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N L+A       GI+   + + +     VP R E VG+      I    A   ++ 
Sbjct: 283 HNLQNLLMAVATARLAGIEPPAIEQAISNFPGVPHRLEAVGSWQDINWINDSKATNYDAA 342

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           ++ L  +         V+   GG+   G      +   + A   ++  D   +E   +  
Sbjct: 343 QVGLAAVEA------PVILIAGGEAKAGDDTQWLQTIQEKAAAVLLIGD--AAEQFSQRL 394

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEML 456
            ++ +     +E     +AI  A E+ 
Sbjct: 395 KQVNYQTVEIVET--MEKAIPKAAELA 419


>gi|146310084|ref|YP_001175158.1| UDP-N-acetylmuramate [Enterobacter sp. 638]
 gi|145316960|gb|ABP59107.1| UDP-N-acetylmuramate [Enterobacter sp. 638]
          Length = 457

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 119/361 (32%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG   H KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIYPENDINLKQTM--AMGCWSEQELVGEQG-HWHAKKLTTDASEWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K     + L GE  ++N L+A      +G+  A   + L        R E  G  + 
Sbjct: 265 GE-KVGQVKWALVGEHNMHNGLMAIAAARHVGVTPADAADALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RI+ V          G        +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGLSKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----AIEMLNKQDVLVVAGK 467
              +         P+ I  ++       I+  +    + T     I+     D ++V   
Sbjct: 383 EVFLLQ-------PQHIPWQVAEVADACIQPAHWHADVDTLADMVIKTAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|330987132|gb|EGH85235.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 448

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 120/352 (34%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 DGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSALRAPVAEHCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +   +       A+  +  +  + D +++
Sbjct: 376 VLL------GRDAELIAQALGDAVT-LVRVETVQAAVEQSARLAQRGDAVLL 420


>gi|88858533|ref|ZP_01133175.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (Murein peptide ligase)
           [Pseudoalteromonas tunicata D2]
 gi|88820150|gb|EAR29963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (Murein peptide ligase)
           [Pseudoalteromonas tunicata D2]
          Length = 449

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 121/381 (31%), Gaps = 44/381 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  I + +GL    +     I    Q+  L+         
Sbjct: 101 QNSWVLAVAGTHGKTTTASMLAWILEYAGLKPGFL-----IGGIVQNFGLS--------- 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       +  +         R   +          NL  DH D      A     
Sbjct: 147 --ARLGETPFFVIEADEYDTAFFDKRSKFVHYLPRTLIMNNLEFDHADIFADLAAIERQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L   ++P+    I  +D+A  + V+ +   +    L     G+    + V        
Sbjct: 205 HHLM-RIVPQNGKVIYPSDEAALQRVIAQGCWSETEQL-----GQDWRYELVNPD--SSA 256

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             + + G+      +   GE  V NA++A      +G+     +E L +      R E  
Sbjct: 257 FLVKLAGQTLGQVNWQAMGEHNVKNAMMAIAAARHVGVPVESSIEALAEFISPKRRMEL- 315

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIAL 407
             N     +Y D+AH   +++  L  +R     + I             G        +L
Sbjct: 316 KANIADICVYDDFAHHPTAIKTTLAGLRAKVGLQKIHAILEPRSNTMKMGVHKTTLLDSL 375

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG 466
             AD   V       E  +   +          +  + + AI    +   +K D +++  
Sbjct: 376 AGADEVYV------FEPKQLDWSLQQAAQDAGAQCYDDVAAIVSDVVAKADKGDQILIMS 429

Query: 467 KG-----HETVHIVTNGEKKM 482
            G     HE   I+   + K 
Sbjct: 430 NGGFEGIHEK--IIKALQSKY 448


>gi|192359036|ref|YP_001983419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cellvibrio japonicus Ueda107]
 gi|190685201|gb|ACE82879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cellvibrio japonicus Ueda107]
          Length = 463

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 119/369 (32%), Gaps = 37/369 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             + +LAV GT GK++ ++ +  I   +G++   +     I     +   +         
Sbjct: 101 PGKWVLAVAGTHGKTTTSAMLTWILDYAGMAPGFL-----IGGVTNNFPTS--------- 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +   A      NL  DH D      A     
Sbjct: 147 --ARLGETPFFVVEADEYDSAFFDKRSKFVHYNARTVILNNLEFDHADIFPDLAAIQRQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAI 285
             L    +P     I  A D    +V+        +  +V                    
Sbjct: 205 HHLV-RTIPNNGLVISPAADKALADVLTMGCWTPQQPFAVINKDTDPDAATPEWTATLLA 263

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            +    ++   G++     +   G   V N L A      +G+   +  + L++   V  
Sbjct: 264 ADGSAFSVQHNGEEIAQVHWSHTGIHNVNNGLAALIAARHVGVTPEIAAQALQQFAGVKR 323

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +  +    ++Y D+AH   +++  L  +R       I+       R    R  + K
Sbjct: 324 RMECL-ADVHSIKVYDDFAHHPTAIKTTLAGLRAKVGDEKIIAIIEP--RSNTMRMGVHK 380

Query: 405 IALDLADIAIVTD-DNPRSEDPEKI---RAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ 459
            AL+ +    VTD D+     P  +     E+I+  P   +   +  E I  AI +    
Sbjct: 381 NALNHS----VTDADDVLWYQPPDVDWAMDEVINKSPVPAKLVHDLDELIHCAISLSEPD 436

Query: 460 DVLVVAGKG 468
             +V+   G
Sbjct: 437 THIVIMSNG 445


>gi|166031191|ref|ZP_02234020.1| hypothetical protein DORFOR_00877 [Dorea formicigenerans ATCC
           27755]
 gi|166029038|gb|EDR47795.1| hypothetical protein DORFOR_00877 [Dorea formicigenerans ATCC
           27755]
          Length = 456

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 100/285 (35%), Gaps = 21/285 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            H    A         +   +    +  N   DH++ H T +AY  AK  +       + 
Sbjct: 163 EHSIAVAEMSSFQLESIVAFRPNVSAILNYTPDHLNRHHTMEAYIAAKENIARNQTEDDY 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             + Y +      + K A    C VL    Q K   L+K   + N + +  + +  +   
Sbjct: 223 CVLNYEEPV----MRKFAETLKCHVLFFSSQHK---LEKGIYLDNDKIIYKNPDEVEVCH 275

Query: 303 L--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    + G     N + A  +    G+    + + +     V  R E+V    + G +Y 
Sbjct: 276 VDELQILGTHNYENVMAAVCMAAVYGVPMETIRKAILAFKGVAHRIEYVAE--KNGVVYY 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           + +  +N  +  +K I+ +      ++ G G D+D      +      +  + ++     
Sbjct: 334 NDSKGTNP-DAAIKAIQAMRRPT--ILLGGGYDKDSEYTEWINSFDGKVKKLILM----- 385

Query: 421 RSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                EKI  +        ++      EA+  A+EM    D +++
Sbjct: 386 -GATKEKIARDCEKCDFHDYVYVDTFEEAMNLAVEMAEPGDAVLL 429


>gi|229524389|ref|ZP_04413794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
 gi|229337970|gb|EEO02987.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
          Length = 467

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 138/397 (34%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 96  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 147

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 148 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+        A++ 
Sbjct: 188 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH----AETAVVN 241

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 242 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  +  ++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 296 GRHNVANVLTVLALLDSAEVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 354 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 404

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 405 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|296134862|ref|YP_003642104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
 gi|295794984|gb|ADG29774.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
          Length = 514

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 141/423 (33%), Gaps = 64/423 (15%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +L A R    +   I+A+TGT+GK++V      + +R+G S    G    IS    D   
Sbjct: 108 ALDALRAERGYAPKIVAITGTNGKTTVTRLTGLMLERAGWSVAVAG---NISPSMLDVLQ 164

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                  L                +E SS  L  H ++G    A +  N+ +DH+D+H  
Sbjct: 165 ARLDADDLP-----------AAWVLELSSFQL--HGMEGFAADAATVLNITQDHLDWHGD 211

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             AY   K  +F      +   ++  DD     + +         LS   Q     + + 
Sbjct: 212 MTAYAADKANIF-GNQSAQGVMVLNRDDPQVLAMQRPGRKLRRFGLSAPQQPGDWGVVRE 270

Query: 283 CAIHN-------------KQQVTISVEGKDFDF--------------------LFPLPGE 309
             I               ++   IS +G                            + G 
Sbjct: 271 GGIDWLARALPEEDSPRNRRGAAISPQGAGQGLGRPGALPEAGLQMQRLMPAEALRIQGA 330

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL A  L  A+G   A +L  L +    P R + V     G R   D   T+   
Sbjct: 331 HNVANALAALALGDAVGAPLAPMLHALREYRGEPHRMQTVAV-IDGVRWIDDSKGTNVGA 389

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +             +V+   G  + Q   P+  + A   A + I         D + I 
Sbjct: 390 TVAALAGMETP----VVLIAGGDGKGQDFSPLRAQAARLRAAVLI-------GRDAQAIA 438

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           AE+  G+       +  +A++ A  +    D  +++     ++ +  N   +  V    +
Sbjct: 439 AEL-QGLAPTEFTQSLEQAVQLAATLAKTGDAALLS-PACASLDMFRNYAHRAEVFVAAV 496

Query: 490 REI 492
           RE+
Sbjct: 497 REL 499


>gi|188496127|ref|ZP_03003397.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 53638]
 gi|193069798|ref|ZP_03050748.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E110019]
 gi|331671140|ref|ZP_08371973.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA271]
 gi|188491326|gb|EDU66429.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 53638]
 gi|192956852|gb|EDV87305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E110019]
 gi|309704739|emb|CBJ04090.1| murein peptide ligase [Escherichia coli ETEC H10407]
 gi|331061729|gb|EGI33655.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA271]
          Length = 457

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESNFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|116070403|ref|ZP_01467672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. BL107]
 gi|116065808|gb|EAU71565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. BL107]
          Length = 310

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 104/302 (34%), Gaps = 24/302 (7%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS  S      + +     G  +      +      TN+G  HI    +++A   AK  +
Sbjct: 13  LSADSHHCALVIEMGMRGPGEIERLSRCTEPDVAVITNIGTAHIGRLGSREAIAAAKCEI 72

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              L P +   +I A DA  +  + +  +   RV+ V              + +   + +
Sbjct: 73  TAALKP-DGVVVIPAGDALLESALSKVWSG--RVVRVRLADDTPVAADCIGVIDAGHLEV 129

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                      PL G     N L+A  +   +G+DSA +     ++ V  GR   +    
Sbjct: 130 ----GAHRLPLPLEGRHNARNVLLALAVADQLGVDSASLNAM--EVSVPGGRNRRLV--- 180

Query: 354 RGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
           +G    +D  Y  +  ++   L  + +   GR   V G   +       +   +A   A 
Sbjct: 181 QGRLTLLDETYNASPEAVMAAL-ALLSSQPGRRFAVLGTMLELGAQSLQLHADVATQAAA 239

Query: 411 ---DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
              D  +V D            A    G+P      +  +A +   E L   DV+++ A 
Sbjct: 240 LKLDGLVVVDGGAEGRA----MANAAAGLPHLAVVSSPEDAAKPLKEWLRAGDVVLLKAS 295

Query: 467 KG 468
           +G
Sbjct: 296 RG 297


>gi|159027413|emb|CAO86897.1| murD [Microcystis aeruginosa PCC 7806]
          Length = 449

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 131/398 (32%), Gaps = 43/398 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVA 130
            S   +L   S  +  + PIL+    +    +               L +TGT+GK++  
Sbjct: 62  ASDLPNLIVVSPGVPWDAPILITAREKGIETIGELELAWRYLQSSPWLGITGTNGKTTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    I Q++GL++   G                        A   L+ +   +  + A 
Sbjct: 122 ALCAAIFQKAGLNAPSCGNIG--------------------YAACELALKADKYDWIIAE 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +    G +T    DH+  HQT + Y+  K  L    L +    I+  DD
Sbjct: 162 ISSYQIESSRDLAPKIGIWTTFTPDHLSRHQTLENYYQIKASL----LQRSDRQILNGDD 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPG 308
            Y +++     +   +      QGK   L         Q   I   G+      L  + G
Sbjct: 218 PYLRQI---GVSQWQQAYWTSVQGKEALLGDPSRGVYLQDNWIVAFGELIAPVNLLKMVG 274

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N L+A       GI+   + E +     V  R E++ T      I    A   ++
Sbjct: 275 SHNQQNLLMAVAAARLAGIEKKAITEAIATFPGVAHRLEYICTYKGLDFINDSKATNYDA 334

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             + L+++ +       ++   G  +    R  + +I   +A + ++ D           
Sbjct: 335 AAVGLQSVPSPA-----ILIAGGEAKAGDDRAWIAEIKAKVATVLLIGDAAADFA----- 384

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIE--MLNKQDVLVV 464
           R     G   +        A++ A E  +  +  V+++
Sbjct: 385 RRLQSAGYQDYECVETMDRAVQRAAELGLAKEAKVVLL 422


>gi|254899266|ref|ZP_05259190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes J0161]
 gi|254912594|ref|ZP_05262606.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes J2818]
 gi|254936921|ref|ZP_05268618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes F6900]
 gi|258609521|gb|EEW22129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes F6900]
 gi|293590586|gb|EFF98920.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes J2818]
          Length = 455

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-TDD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|170021756|ref|YP_001726710.1| UDP-N-acetylmuramate [Escherichia coli ATCC 8739]
 gi|169756684|gb|ACA79383.1| UDP-N-acetylmuramate [Escherichia coli ATCC 8739]
          Length = 457

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESNFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|120555313|ref|YP_959664.1| UDP-N-acetylmuramate [Marinobacter aquaeolei VT8]
 gi|120325162|gb|ABM19477.1| UDP-N-acetylmuramate [Marinobacter aquaeolei VT8]
          Length = 464

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 96/288 (33%), Gaps = 22/288 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++  + +  I  ++G  +  +     I    QD  ++           
Sbjct: 103 RWVMAVAGTHGKTTTTAMLLWILDQAGFDAGYL-----IGGVPQDFPVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L S     +  +         R   I  +       NL  DH D     +A       
Sbjct: 147 ARLGSSDFFVIEADEYDSAFFDKRSKFIHYRPNTLILNNLEFDHADIFDNVEAIERQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291
           L    +P +   +  A D +    ++    +  +  ++G +  +    +      +  + 
Sbjct: 207 LV-RTVPSQGLIVRPARDRHLDNALEMGCWSPVQDTAIGSEISRTADWRAELLAEDGSRF 265

Query: 292 -TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I  E       + L G   V NAL A      +G+     +  L +   V  R E VG
Sbjct: 266 MVIHHEQPVATLKWGLTGLHNVRNALSAIAAARHVGVTPDHAVAALCRFSGVKRRMELVG 325

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               G R+Y D+AH   ++   L+ +R       I+           +
Sbjct: 326 EIG-GVRVYDDFAHHPTAIASTLEGLRNRVGDEPILAIIEPRSNTMKQ 372


>gi|317178903|dbj|BAJ56691.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F30]
          Length = 493

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 138/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVHANPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  Q     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   + G+F  YN   A  +   +G+++  +   + + + +  R + +  N + 
Sbjct: 325 GSVWESFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKVQLENILQATTI--QGDLILFA 486


>gi|260596513|ref|YP_003209084.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           turicensis z3032]
 gi|260215690|emb|CBA28025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cronobacter
           turicensis z3032]
          Length = 438

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + ++ +   + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSVAAEAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  +G     +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLEEGRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+D +    Q Y  AK+R++E      +  ++
Sbjct: 158 ELSSFQLE--TTFSLKAAAATILNVTEDHMDRYPLGLQQYRAAKLRIYEN----ATVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + ++ + V G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGIDVGDYHLNR-----QQGEIWLRVRGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLVGQHNYTNALAALALADAAGLPRASSLKALTTFGGLAHRFQLAYEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D    + 
Sbjct: 323 NVGSTEAALNGL--HLDGTLHLLL-GGDGKSADFSPLAHYLTGDRVRLYCFGRD---GDA 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+   +          EA++     +   D++++
Sbjct: 377 LAALRPEVAERMETM------EEAMKVIAGRVTPGDMVLL 410


>gi|218437868|ref|YP_002376197.1| cyanophycin synthetase [Cyanothece sp. PCC 7424]
 gi|218170596|gb|ACK69329.1| cyanophycin synthetase [Cyanothece sp. PCC 7424]
          Length = 879

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 131/357 (36%), Gaps = 31/357 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I +++G     +G T+T   +  +  +          A   L    V    +E++ 
Sbjct: 505 LTAHIYRQTGKV---VGYTTTDGIYVGEFLVEKGDNTGPYSASVILKDPTVEIAVLESAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+     +     AK++ +  E++  +  AI+ ADD
Sbjct: 562 GGILRSGLAFDTCDVGVVLNVAADHLGIGDIETVEQMAKVKSVVAEIVHPDGYAILNADD 621

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIH-----------LKKVCAIHNKQQVTISVEG-K 298
               ++ +R         S+      IH            +       + + T+ +E   
Sbjct: 622 PLVVQMAERVKGKVAY-FSMNPDNPIIHDHLRRNGLAAVYENGYLSIMEGKWTLRIEEAV 680

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
           +          F + NAL A     A G+D  ++ + +          PGR       S 
Sbjct: 681 NVPVTMGGMAPFMIANALAACLAAFAHGVDIEIIRQGVRTFKPSENQTPGRMNLFNLGSY 740

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH     E +   +R     R+ VV G G  RD+    ++G+++  + D  I
Sbjct: 741 HALV--DYAHNPAGYEAVGGFVRNWRGERLGVVGGPGDRRDEDLI-LLGQLSAQIFDRII 797

Query: 415 V-TDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V  DD+ R  +  ++   I+ GI        +    N + AI   +  + +  ++V+
Sbjct: 798 VKEDDDTRGRERGEVADLIVKGITQENPHVKYEIILNEVTAIEEGLAQVAQNGLVVI 854


>gi|84490004|ref|YP_448236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373323|gb|ABC57593.1| predicted UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Methanosphaera stadtmanae DSM 3091]
          Length = 479

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 122/367 (33%), Gaps = 40/367 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P + + +TG+ GK++    +  I + +G + +Q       SS   +          +   
Sbjct: 111 PMDKIGITGSFGKTTTTDMLTNIFKAAGYNVYQC------SSMKWNLVSEAIVDDIVKGE 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-DYHQTQQAYFNAKMR 232
                  G     +E   HG     +  I L  G  TNL  +H+ ++  + + Y   K  
Sbjct: 165 -----YIGADIAILE-LPHG-TLGLMGEIDLKIGVLTNLRPEHLCEFGGSMEKYVERKAC 217

Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +           +    + Y  +       +          +  Y G +   K    I N
Sbjct: 218 ILPASQKLIANSQCGDLLTYKREDTVYFNFENDEAVNLDKYTPTYYGFYDDGKYNIRIVN 277

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            ++ T      + +        +   N   A  +    GI    + + +     V GR E
Sbjct: 278 NKETT------ESEIEIDTIAFYTYENLTAAIAVSREYGISLNDIKKGIGMFTGVGGRME 331

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           ++G    G   Y D ++   S+    + + ++    +I+++          +   G++  
Sbjct: 332 YLG-KFNGVDAYYDASYGDQSVR---QALESVKDENLIILYDNVDSTTIRDKAESGRVIG 387

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--------EAIRTAIEMLNKQ 459
           D A+I I T      E    +  +    +   IE  + +        EA   A++     
Sbjct: 388 DYANIVIATG---YVEITNTLDMDAALDLLNAIENDDVLKIALCTLDEAAELAMKYAKPG 444

Query: 460 DVLVVAG 466
           D++V  G
Sbjct: 445 DIIVHLG 451


>gi|15804823|ref|NP_290864.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 EDL933]
 gi|26251138|ref|NP_757178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli CFT073]
 gi|91213786|ref|YP_543772.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UTI89]
 gi|110644594|ref|YP_672324.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 536]
 gi|117626579|ref|YP_859902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli APEC O1]
 gi|157156216|ref|YP_001465741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli E24377A]
 gi|168751077|ref|ZP_02776099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4113]
 gi|168754809|ref|ZP_02779816.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4401]
 gi|168766518|ref|ZP_02791525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4486]
 gi|168774050|ref|ZP_02799057.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4196]
 gi|168782754|ref|ZP_02807761.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4076]
 gi|168784877|ref|ZP_02809884.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC869]
 gi|168797807|ref|ZP_02822814.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC508]
 gi|191167263|ref|ZP_03029081.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B7A]
 gi|191170715|ref|ZP_03032267.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli F11]
 gi|193063713|ref|ZP_03044801.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E22]
 gi|194426549|ref|ZP_03059103.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B171]
 gi|194437852|ref|ZP_03069947.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 101-1]
 gi|195937258|ref|ZP_03082640.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 str. EC4024]
 gi|208808759|ref|ZP_03251096.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4206]
 gi|208812704|ref|ZP_03254033.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4045]
 gi|208820356|ref|ZP_03260676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4042]
 gi|209400781|ref|YP_002273775.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4115]
 gi|215489578|ref|YP_002332009.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218556783|ref|YP_002389697.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|218692621|ref|YP_002400833.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ED1a]
 gi|218702934|ref|YP_002410563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI39]
 gi|227886714|ref|ZP_04004519.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 83972]
 gi|237703908|ref|ZP_04534389.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|253775142|ref|YP_003037973.1| UDP-N-acetylmuramate [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037252|ref|ZP_04871329.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           sp. 1_1_43]
 gi|254164161|ref|YP_003047271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B str. REL606]
 gi|254796252|ref|YP_003081089.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019885|ref|ZP_05433750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Shigella sp. D9]
 gi|256025171|ref|ZP_05439036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia sp. 4_1_40B]
 gi|260847066|ref|YP_003224844.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260858385|ref|YP_003232276.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O26:H11
           str. 11368]
 gi|260870988|ref|YP_003237390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261225353|ref|ZP_05939634.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255394|ref|ZP_05947927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285646|ref|YP_003502464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293417735|ref|ZP_06660357.1| ligase [Escherichia coli B185]
 gi|293476535|ref|ZP_06664943.1| ligase [Escherichia coli B088]
 gi|297520974|ref|ZP_06939360.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli OP50]
 gi|301028065|ref|ZP_07191346.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 196-1]
 gi|306815549|ref|ZP_07449698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli NC101]
 gi|331650364|ref|ZP_08351436.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M605]
 gi|331656068|ref|ZP_08357056.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M718]
 gi|331660813|ref|ZP_08361745.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA206]
 gi|331665902|ref|ZP_08366796.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA143]
 gi|331681256|ref|ZP_08381893.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H299]
 gi|332281024|ref|ZP_08393437.1| conserved hypothetical protein [Shigella sp. D9]
 gi|12519234|gb|AAG59430.1|AE005655_9 putative ligase [Escherichia coli O157:H7 str. EDL933]
 gi|26111570|gb|AAN83752.1|AE016771_263 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli CFT073]
 gi|91075360|gb|ABE10241.1| putative ligase [Escherichia coli UTI89]
 gi|110346186|gb|ABG72423.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 536]
 gi|115515703|gb|ABJ03778.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli APEC O1]
 gi|157078246|gb|ABV17954.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E24377A]
 gi|187770281|gb|EDU34125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4196]
 gi|188014851|gb|EDU52973.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4113]
 gi|188999815|gb|EDU68801.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4076]
 gi|189357847|gb|EDU76266.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4401]
 gi|189364179|gb|EDU82598.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4486]
 gi|189374729|gb|EDU93145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC869]
 gi|189379452|gb|EDU97868.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC508]
 gi|190902716|gb|EDV62447.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B7A]
 gi|190908939|gb|EDV68526.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli F11]
 gi|192930700|gb|EDV83306.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E22]
 gi|194415288|gb|EDX31556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B171]
 gi|194423348|gb|EDX39340.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 101-1]
 gi|208728560|gb|EDZ78161.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4206]
 gi|208733981|gb|EDZ82668.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4045]
 gi|208740479|gb|EDZ88161.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4042]
 gi|209162181|gb|ACI39614.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4115]
 gi|209749718|gb|ACI73166.1| putative ligase [Escherichia coli]
 gi|209749720|gb|ACI73167.1| putative ligase [Escherichia coli]
 gi|209749722|gb|ACI73168.1| putative ligase [Escherichia coli]
 gi|209749724|gb|ACI73169.1| putative ligase [Escherichia coli]
 gi|209749726|gb|ACI73170.1| putative ligase [Escherichia coli]
 gi|215267650|emb|CAS12107.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218363552|emb|CAR01207.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|218372920|emb|CAR20802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI39]
 gi|218430185|emb|CAR11043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ED1a]
 gi|222036006|emb|CAP78751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminop
           [Escherichia coli LF82]
 gi|226840358|gb|EEH72360.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           sp. 1_1_43]
 gi|226901820|gb|EEH88079.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836287|gb|EEJ46753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 83972]
 gi|242379755|emb|CAQ34582.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli BL21(DE3)]
 gi|253326186|gb|ACT30788.1| UDP-N-acetylmuramate [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976064|gb|ACT41735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B str. REL606]
 gi|253980220|gb|ACT45890.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli BL21(DE3)]
 gi|254595652|gb|ACT75013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257757034|dbj|BAI28536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257762213|dbj|BAI33710.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257767344|dbj|BAI38839.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281181332|dbj|BAI57662.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE15]
 gi|290765519|gb|ADD59480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320988|gb|EFE60430.1| ligase [Escherichia coli B088]
 gi|291430453|gb|EFF03451.1| ligase [Escherichia coli B185]
 gi|294492555|gb|ADE91311.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IHE3034]
 gi|299878838|gb|EFI87049.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 196-1]
 gi|305851211|gb|EFM51666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli NC101]
 gi|307556405|gb|ADN49180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ABU 83972]
 gi|307629309|gb|ADN73613.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UM146]
 gi|312948886|gb|ADR29713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|320190635|gb|EFW65285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. EC1212]
 gi|320200638|gb|EFW75224.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli EC4100B]
 gi|320638992|gb|EFX08638.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. G5101]
 gi|320644361|gb|EFX13426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H- str. 493-89]
 gi|320649679|gb|EFX18203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H- str. H 2687]
 gi|320655075|gb|EFX23036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660582|gb|EFX28043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665851|gb|EFX32888.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. LSU-61]
 gi|323157567|gb|EFZ43676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli EPECa14]
 gi|323162030|gb|EFZ47902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E128010]
 gi|323176148|gb|EFZ61740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1180]
 gi|323181966|gb|EFZ67377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1357]
 gi|323189886|gb|EFZ75164.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli RN587/1]
 gi|323935358|gb|EGB31706.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E1520]
 gi|323940153|gb|EGB36347.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E482]
 gi|323950696|gb|EGB46574.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H252]
 gi|323955522|gb|EGB51286.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H263]
 gi|323960276|gb|EGB55917.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H489]
 gi|323970511|gb|EGB65770.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli TA007]
 gi|323975422|gb|EGB70523.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli TW10509]
 gi|326345435|gb|EGD69178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. 1125]
 gi|330908580|gb|EGH37099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli AA86]
 gi|331040758|gb|EGI12916.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M605]
 gi|331046422|gb|EGI18512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M718]
 gi|331051855|gb|EGI23894.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA206]
 gi|331056953|gb|EGI28947.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA143]
 gi|331081477|gb|EGI52638.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H299]
 gi|332103376|gb|EGJ06722.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 457

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|329848047|ref|ZP_08263075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
 gi|328843110|gb|EGF92679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
          Length = 475

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 104/312 (33%), Gaps = 39/312 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++        + V+ +   F    A       P   +A+TGT+GKS+  + +  I
Sbjct: 79  HPEPHWTVKAAKAAGVQVLGDIELFARTLARFPARNRP-KTVAITGTNGKSTTTALIGHI 137

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G +   +     I     D     P  +Y+                +E SS+ LD 
Sbjct: 138 LKSAGKN---VHVGGNIGIGVLDLDEMQPGAVYV----------------IETSSYQLDL 178

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K       NL  DH+D H     Y  AK R+F     K   A+I ADD Y+ ++
Sbjct: 179 SLT--FKPDVSILMNLSPDHLDRHGGMDGYIAAKKRIFMNQ-EKGQTAVIGADDDYTADL 235

Query: 257 MKRAHNAG---------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           + +   +           RV+  G       L        +  + +         +  L 
Sbjct: 236 ISQMRVSHPVKLVAISSRRVVGDGVYALNGELYDASGERARHIIDLKT-------VRTLT 288

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N   A   C A+G+ +  +   +     +  R + +G   +   I    A  ++
Sbjct: 289 GRHNWQNGAAAFAACKALGLTNEQIAVGMRSFPGLAHRMQEIGRIGKVRFINDSKATNAD 348

Query: 368 SLEMILKNIRTI 379
           +    + +    
Sbjct: 349 AARQAMSSFDKF 360


>gi|328553585|gb|AEB24077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           amyloliquefaciens TA208]
 gi|328911621|gb|AEB63217.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 451

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 126/352 (35%), Gaps = 43/352 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + V ++ +   + +   G   T++S   +         ++   L
Sbjct: 113 AKFIGITGSNGKTTTTTLVYEMLKADSIKALIAGNIGTVAS---EVAYHADGDEWIVTEL 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                     +   G   N+   H+DYH +++ Y  AK +++
Sbjct: 170 SSFQLMGTHAF-----------------RPEIGLILNVFDAHLDYHHSRENYEKAKQKVY 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L +   AI+   D     + +          SV  +       K   +    +  + 
Sbjct: 213 LHQL-ESDTAIVNQSDETVVRLAEGGKAGTVP-FSVSQELSSGAFIKDGMLMFGDEAILP 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V+         LPG   + N L A       G  +  + + L     V  R ++V T  +
Sbjct: 271 VDD------IVLPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVKHRLQYV-TAIQ 323

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + Y D   T+  +    K +    +   +++   G DR  G   +   +       A+
Sbjct: 324 NRKFYNDSKATN--ILATSKALSAFKAP--VILLAGGLDRGNGFDDLKPYM---DNVKAV 376

Query: 415 VT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +T     P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 377 LTFGQTAPKIE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|307312991|ref|ZP_07592619.1| UDP-N-acetylmuramate [Escherichia coli W]
 gi|306907159|gb|EFN37666.1| UDP-N-acetylmuramate [Escherichia coli W]
 gi|315063544|gb|ADT77871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli W]
 gi|323380377|gb|ADX52645.1| UDP-N-acetylmuramate [Escherichia coli KO11]
          Length = 457

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LA+ GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAIAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|191638274|ref|YP_001987440.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           casei BL23]
 gi|226711915|sp|B3WDY1|MURD_LACCB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|190712576|emb|CAQ66582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus casei
           BL23]
 gi|327382306|gb|AEA53782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei LC2W]
 gi|327385501|gb|AEA56975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei BD-II]
          Length = 459

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 19/266 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +  +       TN+   H+D+H  +  Y  AKMR+     P +   I+  D     E+ K
Sbjct: 177 IKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDD-YFIMNWDLPEMHELAK 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           ++            +G         A      +T   +         +PG   + NAL A
Sbjct: 236 QSKAQIVPFSRKNAEGA-------RAQLIDGWLTFDGDRIMKASEMQIPGLHNIENALAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                  G+    + E L     V  R +++ T   G R+Y D   T+  +E     +  
Sbjct: 289 IAAVKLEGVGDDAIREVLRTFSGVKHRIQYLET-IDGRRVYNDSKATN--VEAATVALNA 345

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                +      G DR      +   +   +  + +     P      KI  +   G+P 
Sbjct: 346 FDQPIVW--LAGGLDRGLPMDALTPLVKKHVKSMVVFGQTAPLM---AKIGKD--AGVP- 397

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                N + A+  A E+    DV+++
Sbjct: 398 VQTTENVMTAVPLAYEVSRPGDVILL 423


>gi|313607758|gb|EFR83975.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria
           monocytogenes FSL F2-208]
          Length = 461

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 169 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ADD 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 226 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGARD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 279 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 338 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 386

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGID--VHYVDNVEAAVPVAYRESAPGDIILL 428


>gi|299783434|gb|ADJ41432.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Lactobacillus fermentum CECT 5716]
          Length = 437

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 103/361 (28%), Gaps = 47/361 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG    +     D R                
Sbjct: 106 IGVAGAHGKTSTTGLLAHVLSNVEQTSYLIGD--GVGVGVADARFFVFEAD--------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY +      ++    FE  
Sbjct: 155 ----------EYRDHFLAYH------PDYAIMTNVDFDHPDYFKDLADVKDS----FETY 194

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
             +    +     A+ ++   R  N    V   G           +    +        +
Sbjct: 195 GRQVKKGLF----AWGEDKSLRDLNVDVPVYYYGTAPDDDFRAANIVRTPDGSTYDAYYK 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   L GE  V N+L    +     ID   +   L     V  RF         
Sbjct: 251 DQKLGTFTIHLYGEHSVLNSLAVVAVAYMEKIDLEKIKAELANFSGVKRRFAEEDIADM- 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            ++  DYAH  + ++  +   R       ++VVF                 +L  AD   
Sbjct: 310 -KVIDDYAHHPSEIKATIDAARQKFPQKELVVVFQPHTYSRLAAYLTEFGQSLSRADKVF 368

Query: 415 VTDDNPR-SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ET 471
           VT       E    I   ++   IPG  +      +I   +   +   V+V  G G  E 
Sbjct: 369 VTPIFGSIREQNGSISAKDLEDLIPGSEDIDQ--ASITKLLAYHDA--VVVFMGAGDIEK 424

Query: 472 V 472
            
Sbjct: 425 Y 425


>gi|225181532|ref|ZP_03734974.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167780|gb|EEG76589.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 410

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 131/383 (34%), Gaps = 44/383 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       ++ VTG+SGK+S    +  I ++ G     +      +SF +  +  T    
Sbjct: 1   MNNTFARPLIGVTGSSGKTSTILMLNSILEQCGNKPAMLESWKGPASFTKLVKNNTTGSR 60

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                 E     L Q ++ G      + TNL  DH+    TQ+ Y  
Sbjct: 61  PLLA---------------EVPVEALRQRQVKGEIFQCAALTNLTVDHLPACGTQERYHE 105

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K   F +L P  + A++ ADD  S  +            ++ Y    I  K +   +  
Sbjct: 106 LKSEFFNQL-PPSAKAVLNADDPRSLTLAGDG-GLDTITFALHYPNAMIVAKNIRTKNFS 163

Query: 289 QQVTISVEG------------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               +SV              +      P+ GE  +YNAL+AA L + + +D   +   L
Sbjct: 164 SVFELSVNTDIPTFSNRVISPQTTKVHLPMLGEQNIYNALLAATLALLLDVDLESIARAL 223

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +   +    E +  +     +  D A    ++   L   + +   R +V+ G  G   Q
Sbjct: 224 GRFPGIRRNMEIISVDK--ALVLDDGARNPAAIRAALAGAKLLGKRRTLVLHGIYGKGGQ 281

Query: 397 GKRPIMGKIALDL-----ADIAIVTDDNPRSEDPEKIR--------AEIIHGIPGFIEKG 443
                  +              IVT     ++   ++R         E+           
Sbjct: 282 TINRCNARELAHWLQQSPGSQLIVTRSMYHTKHKYQVRVSEEKTFLTELKESKTEAAYFP 341

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +  +A+ + +    ++D++++ G
Sbjct: 342 DLPDAVESILSHACEEDLILLLG 364


>gi|78777404|ref|YP_393719.1| cytoplasmic peptidoglycan synthetases-like [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497944|gb|ABB44484.1| Cytoplasmic peptidoglycan synthetases-like protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 481

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 132/356 (37%), Gaps = 48/356 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG+ GK+S+ +F+ +I  +           +T+    +D   + P+   +     
Sbjct: 161 QIVAITGSYGKTSIKNFLYEILSKKYRVYATPRSVNTLGGIIKDINESLPNESEI----- 215

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y+   G       A   G        ++        +G  HI+Y +T Q   + K+ + +
Sbjct: 216 YICEAG-------ARESGDIYEITTFLEPQNVVVGKVGLAHIEYFKTLQNIISTKLEIMK 268

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               + +       D               +V   G +     ++ + A  +     I +
Sbjct: 269 SPRLQRAFIHTSVTDE-----------PHEKVTFFGNE-----IQNIDAKLDGTDFEIHL 312

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + +       + G FQ  N  VA  +    G+ +  ++E +  L  V  R + +     G
Sbjct: 313 DNEILSLHTNVLGSFQTMNIAVAIRIAKTFGMSNDEIIEAVRGLKPVEHRLQMIKA---G 369

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G++ +D  +  N ++ +L+ +R  ++  GR ++V     +        + +    + DI 
Sbjct: 370 GKLILDDGYNGN-IDGMLEAVRLCSLHEGRKVIVTPGLVESSNELNLKLIEAINSVFDIV 428

Query: 414 IVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVA 465
           IVT           + AE+      +   I   ++ + I + +       D+++ A
Sbjct: 429 IVT---------GSLNAELFSKNLNVKNKIMLHDKTK-IESLLSSQTRAGDIILFA 474


>gi|74310707|ref|YP_309126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           sonnei Ss046]
 gi|118595692|sp|Q3Z5S1|MURD_SHISS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|73854184|gb|AAZ86891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sonnei
           Ss046]
 gi|323165971|gb|EFZ51751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella sonnei
           53G]
          Length = 438

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +    S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIAQAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDAECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQLGDMVLL 410


>gi|300690405|ref|YP_003751400.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           PSI07]
 gi|299077465|emb|CBJ50090.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           PSI07]
          Length = 461

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 133/411 (32%), Gaps = 40/411 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+  V+ +  S  +       +  +  V             +  +  + +LAV GT GK
Sbjct: 61  GADLYVIGNVISRGNPLMEAILDRNLPYVSGP----QWLGDNVLRQ--KWVLAVAGTHGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I Q +G     +     +    ++  L+           + L++     + 
Sbjct: 115 TTTTSMLAWILQDAGYDPGFL-----VGGVPRNFGLS-----------ARLTASDFFVIE 158

Query: 187 VEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +         R   +  +       NL  DH D      A    +       +P +   
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHLVRTVPGQGRL 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++   +   K V+ R     C   +  +  +      +  + +     + ++G+      
Sbjct: 218 LVNGREESLKRVLARG----CWSEAEFFGAEDGAGWAIADLGDDDSFDVVLDGQVQGRVH 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PL G+    NAL A      +G+  A  +E L +   V  R E  GT   G  +Y D+A
Sbjct: 274 WPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-VDGVTVYDDFA 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI----VTD 417
           H   ++   +  +R       I+            G        +L+ AD          
Sbjct: 333 HHPTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAAGG 392

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    D     A +      F + G  +EA+  A       D ++V   G
Sbjct: 393 RDAIGWDLAGALAPLGERAQAFSDLGTLVEAVTAA---ARPGDHVLVMSNG 440


>gi|34556863|ref|NP_906678.1| D-alanyl-D-alanine-adding enzyme [Wolinella succinogenes DSM 1740]
 gi|34482578|emb|CAE09578.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Wolinella succinogenes]
          Length = 481

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 142/374 (37%), Gaps = 46/374 (12%)

Query: 99  RKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           R  L+ +A+    K        I+A+TG+ GK+S+ +F+ QI   +          +T +
Sbjct: 140 RVLLNRYATAAKDKLASMPNLTIIAITGSYGKTSLKNFLAQILNDNFKVHASPRSVNTFA 199

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
               D          + + LS LS   +      A + G  +     ++   G    +G 
Sbjct: 200 GIVAD----------INENLSPLSD--IYIAEAGARTRGDIKEIGVLLEHHYGIVGKVGE 247

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H++Y +T +     K  L              A     KE+     N       +    
Sbjct: 248 QHMEYFRTLENVRETKFEL--------------AQSPRLKELFSYEGNTPP--SGIKATS 291

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                + + A        + +EG+ + F   + GEF V N   A  + + +GI    +  
Sbjct: 292 FPTETRNIKATLKGTSFEMLIEGQFYPFETEVLGEFNVTNISAAILVALRLGIPIEKIQR 351

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGG 392
            + +L  +P R + +  N +   + +D +   N LE +L+ IR  ++  GR ++V     
Sbjct: 352 QVARLKPIPHRLQKMEVNLK---LILDDSFNGN-LEGMLEAIRLSSLYYGRKVIVTPGLV 407

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +  +     + +   +  DIAI+T +     + + + A I       +++    EA+   
Sbjct: 408 ESTEEANTTLAQAINETFDIAILTGE----LNLKTLSAHIQKPQKVVVKE---KEALEEV 460

Query: 453 I-EMLNKQDVLVVA 465
           +     + D+++ A
Sbjct: 461 LKATTREGDLILFA 474


>gi|15834464|ref|NP_313237.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 str. Sakai]
 gi|168760482|ref|ZP_02785489.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4501]
 gi|217324395|ref|ZP_03440479.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. TW14588]
 gi|13364687|dbj|BAB38633.1| putative ligase [Escherichia coli O157:H7 str. Sakai]
 gi|189368906|gb|EDU87322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4501]
 gi|217320616|gb|EEC29040.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. TW14588]
 gi|326346707|gb|EGD70441.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. 1044]
          Length = 457

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 119/371 (32%), Gaps = 32/371 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                 +   H   +LAV GT GK++ A     I ++ G     +     I     +  +
Sbjct: 93  QWLHDFVLRDH--WVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEV 145

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYH 220
           +           + L       +  +         R   +          NL  DH D  
Sbjct: 146 S-----------ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIF 194

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
              +A       L   ++P +   I   +D   K+ M  A         VG QG     K
Sbjct: 195 DDLKAIQKQFHHLV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAK 250

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           K+    ++ +V +  E K  +  + L GE  ++N L+A      +G+  A     L    
Sbjct: 251 KLTTDASEWEVLLDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFI 309

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGK 398
               R E  G  + G  +Y D+AH   ++   L  +R    G  RII V     +  +  
Sbjct: 310 NARRRLELRG-EANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMG 368

Query: 399 RPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
                   +L  AD   +    P    P ++       +      G+        ++   
Sbjct: 369 ICKDDLAPSLGRADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQ 425

Query: 458 KQDVLVVAGKG 468
             D ++V   G
Sbjct: 426 PGDHILVMSNG 436


>gi|83648438|ref|YP_436873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Hahella chejuensis KCTC 2396]
 gi|83636481|gb|ABC32448.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Hahella chejuensis KCTC 2396]
          Length = 445

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 122/366 (33%), Gaps = 29/366 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +  +    +LAV GT GK++  S +  + +++GL+   +     +S     +  
Sbjct: 81  QWLAEHVLQE--RWVLAVAGTHGKTTTTSMLAWVLEQAGLAPGFL--IGGVSQGFDVSAR 136

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              +  ++ +A  Y S+                       +       N+  DH D  + 
Sbjct: 137 LGDTSFFVIEADEYDSAFFDKRSKFIHY------------RPRTLIINNMEFDHADIFRD 184

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                  +       +P++   I        +E +     +  +  S+      I  +  
Sbjct: 185 LGDIQR-QFHHVVRTVPRQGLVITPTQTPAVEETLAMGLWSPRQTFSLSDAQADIRAE-- 241

Query: 283 CAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           C   +  +  + + G+    + + + G   V NAL        IGI     +  L     
Sbjct: 242 CLAEDGSRFEVFLNGESCGIVEWGMSGAHNVQNALATLLAARHIGIRPQNAIPALSAFPG 301

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG-GDRDQGKR 399
           V  R E +G    G   Y D+AH   ++++ L+ +R  +    I  +          G  
Sbjct: 302 VKRRLEKLG-ERNGVAAYDDFAHHPTAIQLTLEGLRKRVGDAPIWAIIEPRSNTMKMGVH 360

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-K 458
                 + +LAD  I    N    +      + +   P   +  ++++ I   +  +   
Sbjct: 361 RDTLLASAELADHVI--WANLDGYEW---LDDAVRNAPPKHQIVDKVDEITRLLADVKGP 415

Query: 459 QDVLVV 464
             ++++
Sbjct: 416 AHIVLM 421


>gi|297521715|ref|ZP_06940101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 91

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVA 465
            AD+A+VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VA
Sbjct: 1   FADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVA 60

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GKGHE   IV N     S D   +  +LG+I
Sbjct: 61  GKGHEDYQIVGNQRLDYS-DRVTVARLLGVI 90


>gi|260434852|ref|ZP_05788822.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 8109]
 gi|260412726|gb|EEX06022.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 8109]
          Length = 469

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 66/431 (15%), Positives = 131/431 (30%), Gaps = 60/431 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           + +A A G+  +V+S+A      +     +    I    +    L         + P   
Sbjct: 68  VTEATAAGSPVVVISTAIPESNPELQRARQQGLEIWHRSDLLAAL-------IEQQPS-- 118

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV G+ GK++ ++ +  +   +        PT+ I            +           
Sbjct: 119 IAVAGSHGKTTTSTLITTLLLEADQD-----PTAVIGGIVPSLGSNGHAGQG-------- 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +  +        L       G  TNL  DH D++       +      +  
Sbjct: 166 --------KLLVAEADESDGSLVKFSPSLGVITNLELDHTDHYSNLDDLIST----LQRF 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +   D      +++          +   +        +    ++        G
Sbjct: 214 AGGCDRVLANHDCP----ILQAHFQPTAWWSNQSAESVDFAALPLSLEGDRCVTRFYEAG 269

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               DF  P+ G   + NA  A   C   G+    ++E L  L     RF+  GT  +G 
Sbjct: 270 HPVGDFTLPMAGLHNLSNATGALAACRMEGLPFDQLVEGLAGLKTPGRRFDLRGTW-KGR 328

Query: 357 RIYVDYAHTSNSLEMILKNIRTI----------TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            I  DYAH  + ++  L+  R +             R++ VF         +       A
Sbjct: 329 HIVDDYAHHPSEVQATLEMARLMVRSGRSPLPTAPQRLLAVFQPHRYSRTRQFLDGFAKA 388

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF-IEKGNRIEAI-RTAIEMLNK 458
           L   D+ ++    P  E P        +   +    P   I   + ++ +    I+   +
Sbjct: 389 LQNCDLLLLAPVYPAGEQPLQGISSNALADRVRKLKPDLKIVVADNLDQLTELVIQQSRE 448

Query: 459 QDVLVVAGKGH 469
            D+++  G G 
Sbjct: 449 NDLVLAMGAGD 459


>gi|227530463|ref|ZP_03960512.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349568|gb|EEJ39859.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 435

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 90/303 (29%), Gaps = 42/303 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G  GK+S  + +  +      +S+ IG      +                      
Sbjct: 106 IGIAGAHGKTSTTALLAHVLDGVEPTSYLIGDGVGKGN---------------------A 144

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +     + E   H L  H            TN+  DH D+ +      N+    FE  
Sbjct: 145 KDRFFVFEADEYRDHFLAYH------PDYAIMTNIDFDHPDFFKDIDDVRNS----FETY 194

Query: 238 LPKESPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV 295
             +   AI  + DD   +++     +    V   G         + +             
Sbjct: 195 GKQVKKAIFAWGDDENLRKL-----DVDVPVYYYGTNDKDDFRAENIQRTPAGSTYDAYF 249

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + +    F   L GE  V N+L    +     +D A +   L     V  RF    T+  
Sbjct: 250 KDQKLGTFTIHLYGEHSVLNSLAVIAVAYMEHVDMADIKRELANFTGVKRRFS--ETDIA 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH  + ++  +   R      ++I VF                 +L  AD  
Sbjct: 308 DETLIDDYAHHPSEIKATIDAARQKYPDRQVIAVFQPHTYSRLAAYIDGFAESLRKADKV 367

Query: 414 IVT 416
            VT
Sbjct: 368 FVT 370


>gi|194476888|ref|YP_002049067.1| UDP-N-acetylmuramate--alanine ligase [Paulinella chromatophora]
 gi|171191895|gb|ACB42857.1| UDP-N-acetylmuramate--alanine ligase [Paulinella chromatophora]
          Length = 470

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 140/429 (32%), Gaps = 78/429 (18%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A S    +  A  R+   +    +    L          + +  +AV G+ GK++
Sbjct: 78  VITSTAVSELNAELVAARRAGLEVFHRSDVLAALI---------NRQLSIAVAGSHGKTT 128

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            ++ +      S        PT+ I              +      + L ++      V+
Sbjct: 129 TSTLIATFLSNSNHD-----PTAIIGGILPAIGCNGYGGMG-----NLLVAE------VD 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FEELLPKESPA 244
            S   L + R        G  TNL  DH +++        AK R      +      S  
Sbjct: 173 ESDGSLVKFRAS-----LGIITNLELDHTNHY--------AKFRDLITTMQYFASGCSRL 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           +   D      V++    A     +  Y+G       V    +   V    +G+    F 
Sbjct: 220 LANRDCP----VLRDYFTAQEWWSNEIYEGVKFAGIPVSLKGDHTLVDFYEDGELMCRFE 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG   + N   A   C   G++   +  +L KL     RF++ GT  +   I  DYA
Sbjct: 276 LPLPGLHNLSNITAAVASCRLQGLNLDRLTINLVKLKPPSRRFDYCGTW-KSRIIVDDYA 334

Query: 364 HTSNSLEMILKNIRTITSGR----------IIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           H  + ++  L   R +              +I VF         +      +AL  AD  
Sbjct: 335 HHPSEVKATLGMARLMVQSHSGPLPQSPLRLIAVFQPHRYTRTAEFLESFAMALVNADQI 394

Query: 414 IVTDDNPRSEDP-------------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           ++       E P             E+IR ++I  +     +      I+         D
Sbjct: 395 LIAPIYSAGEKPIPGISNATLASVIERIRPDLITLVANNYTQL-----IQQMESFTQPGD 449

Query: 461 VLVVAGKGH 469
           ++++ G G 
Sbjct: 450 LILMMGAGD 458


>gi|290892183|ref|ZP_06555179.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290558306|gb|EFD91824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 455

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ADD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGARD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGID--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|254831722|ref|ZP_05236377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 10403S]
          Length = 455

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ADD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|270290450|ref|ZP_06196675.1| UDP-N-acetylmuramate-alanine ligase [Pediococcus acidilactici 7_4]
 gi|270281231|gb|EFA27064.1| UDP-N-acetylmuramate-alanine ligase [Pediococcus acidilactici 7_4]
          Length = 438

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 99/328 (30%), Gaps = 46/328 (14%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V    +FL    +          + V GT GK+S    +  +      +S+ IG  + 
Sbjct: 88  LKVVRYHEFLGQLLAAY------TSIGVAGTHGKTSTTGLLAHVLGGVDKTSYLIGDGTG 141

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P   +            + +                         TN+
Sbjct: 142 KG---------VPDARFFVFEADEYRRHFIAYH------------------PDYMIMTNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG- 271
             DH DY++      +A    F++   +    +     A+ ++   R  +A   V   G 
Sbjct: 175 DFDHPDYYKDLADVESA----FQQAASQVKKGLF----AWGEDTSLRKLHADVPVYYYGT 226

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   K +       +  +   G+    F   L GE  V N L    +     ID A
Sbjct: 227 ADNDDFQAKNIVRTTTGSEFDVEHRGEPIGHFKINLFGEHNVLNTLAVIAVAYFEKIDLA 286

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFG 389
           LV + L     V  RF           +  DYAH  + ++  L   R      +I+ VF 
Sbjct: 287 LVQKELLSYQGVKRRFSKSTVGDN--ILIDDYAHHPSEIKATLDAARQEFPDKKIVAVFQ 344

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTD 417
                           +L LAD  ++T+
Sbjct: 345 PHTYTRTAALLDGFAKSLSLADQVVLTE 372


>gi|90416334|ref|ZP_01224266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
 gi|90332059|gb|EAS47273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
          Length = 450

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 138/394 (35%), Gaps = 46/394 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS   SL++ +        + ++ +   FL              ++ +TG++GKS+V 
Sbjct: 74  VVVSPGISLEEPALVAAQQQKVKLLGDVELFLEHA--------KAPVVLITGSNGKSTVT 125

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V ++ Q SGL     G   T                     +  L         +E S
Sbjct: 126 KLVGEMAQASGLKVGVGGNLGT--------------------PMLDLLDDENQLYVIELS 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   +   +    +  N+  DH+D +   Q Y  AK R+F       S  I    D
Sbjct: 166 SFQLEL--VTDTRGAISAILNISPDHMDRYADLQQYHAAKHRIFRG----ASQVIFNRQD 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A +  ++  A     ++ + G     +    +     +  +   ++         L G  
Sbjct: 220 ALTNPLLSVA----VKLCNFGLNRPDLANFGLLDEEGETWLAYGLKPLMRSAELALKGRH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NAL A  L  A G+D A +L  L +   +  R E+V T   G     D   T+    
Sbjct: 276 NIANALAALALGQAAGLDMAAMLTTLTRFTGLSHRCEYVAT-VDGVTYIDDSKGTNIGAT 334

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +   N         +++   G  + Q    +   +   +  +A+        ED + I A
Sbjct: 335 VAALNGFGEDDRANLILIAGGQGKGQNFTELKAPLGKFVKLLALF------GEDAQSI-A 387

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E + G        +   A+  A  +    D++++
Sbjct: 388 ETLSGTTQIETLASLQAAVDCARAVAQPGDIVLL 421


>gi|330877135|gb|EGH11284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 448

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 119/350 (34%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKFLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L +   +  R +++   + 
Sbjct: 259 FDNLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLRERNG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    +    ++ + +   G+++++   G  +      +   +A       +
Sbjct: 319 VDYYNDSKATNVGAALAAIEGLGSDIDGKLVLI-AGGDGKGADFSGLRAPVAQYCRAAVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D E I   +   +P  I       A   + E+    D +++
Sbjct: 378 L------GRDAELIAQALGDAVP-LIRVDTVQAAAERSAELAQHGDAVLL 420


>gi|213865366|ref|ZP_03387485.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 423

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 69  RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 126

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 127 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 174

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 175 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDTSEWEVWLD 230

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 231 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 288

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 289 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 348

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 349 EVFLLQP-PHI--PWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 402


>gi|121728372|ref|ZP_01681401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|147674702|ref|YP_001217905.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O395]
 gi|262168384|ref|ZP_06036081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
 gi|172047587|sp|A5F5N1|MURD_VIBC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121629363|gb|EAX61794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|146316585|gb|ABQ21124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
 gi|262023276|gb|EEY41980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
          Length = 440

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 138/397 (34%), Gaps = 53/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +      LFA  +       ++A+TG++GKS
Sbjct: 69  ADLVVTNPGIALATPEIQQVLAAGIPVVGDIE----LFAWHVD----TPVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +G+ +   G     +                      L S  V    +
Sbjct: 121 TVTDLSGVLANAAGVKAAVGGNIGVPA--------------------LDLISPDVELYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+F+        A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMGDYRQAKLRIFDH----AETAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +       H A  +V++ G +        +     ++ +    E         L 
Sbjct: 215 ADDTQTFP----DHAAHLQVVTFGVEQAAQF--SLAQHQGREYLFARDEAVMACAELSLV 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    L  + G++  L L+ L+    +  R + V  N  G +   D   T+ 
Sbjct: 269 GRHNVTNVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN-HGIKWVNDSKATN- 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +   L  +  +     + +   G  +     P+   +A     +     D         
Sbjct: 327 -VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDG-------- 377

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P      +    IR+    L   D++++
Sbjct: 378 --HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|320193650|gb|EFW68285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli WV_060327]
 gi|323965623|gb|EGB61077.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli M863]
 gi|327250177|gb|EGE61896.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli STEC_7v]
          Length = 457

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 116/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     +      +     S  ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV--IGGVPGNFDVSARLGESDFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|229592818|ref|YP_002874937.1| UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl-m es
           o-diaminopimelate ligase [Pseudomonas fluorescens SBW25]
 gi|229364684|emb|CAY52629.1| UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl-m es
           o-diaminopimelate ligase [Pseudomonas fluorescens SBW25]
          Length = 449

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 133/404 (32%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       +  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGVPQNFSVS-----------ARLGDTPFFVIEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLP 307
            +   + V++        V + G  G++          +  +  +  +G+    + + + 
Sbjct: 222 TEPALQRVIEM--GCWTPVQTTGAGGQWQV---KLLSEDGSKFEVLFDGEAQGIVDWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NALV       +G+  ++ +  L     V  R E V  +  G  IY D+AH   
Sbjct: 277 GQHNVANALVTLAAARHVGVVPSMGIAALSAFKSVKRRMEKV-ADVNGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R       I+            G        +++ AD A+         D 
Sbjct: 336 AIATTLDGLRKRVGDAPIIAIIEPRSNSMKLGAHRDGLPESVNDADEAVWYAPANLGWDL 395

Query: 426 EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             I A  +  +P  +   + IE  I    +       +VV   G
Sbjct: 396 PGIAA--LCTVPSTVC--DSIEGIIEHVRQQAKPGTHVVVMSNG 435


>gi|108804332|ref|YP_644269.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
           xylanophilus DSM 9941]
 gi|118595689|sp|Q1AVX1|MURD_RUBXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|108765575|gb|ABG04457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 440

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 135/400 (33%), Gaps = 53/400 (13%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G + +VVS     +D       R   P++          +            + AVTGT+
Sbjct: 60  GVDRVVVSPGVRPRDAVLREARRRGIPVIS--------EVGLGLELLGPGVRVAAVTGTN 111

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V    + I + +G++    G                 S   L   L  +   GV  
Sbjct: 112 GKTTVVDMARHILRVAGVAHAVAG----------------NSWRALTGCLEEVRRAGVLV 155

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS  L  H L        +  N+  DH+++H + + Y   K+R+F    P +  A
Sbjct: 156 --LEVSSFQL--HHLPPPGFEVAALLNVRPDHLNWHSSFEEYARDKLRVFGGQGPGD-LA 210

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ ADD   +                G + + + + +        ++ +  E    +   
Sbjct: 211 LLSADDPICRRAAG------------GLRAEVVLVGEGETGVRDGRLLLRGEFLAGEREL 258

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G   + NAL AA     +G     + E L    + P R + V     GG  Y+D + 
Sbjct: 259 GFAGGHNLKNALFAAAAAARLGAGLEAIREALRGYRLKPHRMQVVAEE--GGVTYIDDSK 316

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +N           ++ G    V   GG   +     +         +    +  PR  D
Sbjct: 317 ATNP---AAVAAALLSLGGRPAVLILGGSEKETDFEEVLPHLGGCRAVVCQGEAGPRLRD 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +E   G    +  G+   A+  A  +    D +++
Sbjct: 374 F---LSERWGG--EVVLAGDLASAVEAARRLARPGDAVLL 408


>gi|325679015|ref|ZP_08158613.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
 gi|324109519|gb|EGC03737.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
          Length = 465

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 119/358 (33%), Gaps = 48/358 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P    A+TG+ GK++  + V +  +  G      G                     L   
Sbjct: 117 PCKTYALTGSDGKTTTTTLVSEFLKAEGKRVHLGGNIG----------------KALLPL 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +S   V     E SS  L   R           TN+  +H++ H T + Y  AK  +
Sbjct: 161 VETISETDVAVC--ELSSFQLISMRES---PDVAGITNIRPNHLNVHGTMEEYTQAKCNI 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                   S AI+  DD  +  +    R   A   +      G F+    +   +   +V
Sbjct: 216 LYHQ-NAYSKAILSLDDEVTHGLADLVRGELAWFSIKEKPDNGAFLREDGMLCYNECGKV 274

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T  V   D      +PG   V + L A  +     +    V +  ++   V  R EFV  
Sbjct: 275 TEYVHMND----IKIPGMHNVEDYLTAIAMTYGE-VKPETVAKIAKEFGGVEHRIEFVRE 329

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                     Y ++  S    +         + I++   G D+     P+   I   +  
Sbjct: 330 LDG----VKYYNNSIASSPTRVLACLAAFDKKQIMI-QGGSDKGVSFEPMAAPICEKVKV 384

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH-------GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + ++       +  +KIRA +         GI   I   +  EA+ TA E   + D++
Sbjct: 385 LILM------GQTKDKIRAAVEAAPNFKTSGIK-IITVKDMAEAVLTAREYAEEGDIV 435


>gi|304384668|ref|ZP_07367014.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus acidilactici
           DSM 20284]
 gi|304328862|gb|EFL96082.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus acidilactici
           DSM 20284]
          Length = 443

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 99/328 (30%), Gaps = 46/328 (14%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V    +FL    +          + V GT GK+S    +  +      +S+ IG  + 
Sbjct: 93  LKVVRYHEFLGQLLAAY------TSIGVAGTHGKTSTTGLLAHVLGGVDKTSYLIGDGTG 146

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P   +            + +                         TN+
Sbjct: 147 KG---------VPDARFFVFEADEYRRHFIAYH------------------PDYMIMTNV 179

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG- 271
             DH DY++      +A    F++   +    +     A+ ++   R  +A   V   G 
Sbjct: 180 DFDHPDYYKDLADVESA----FQQAASQVKKGLF----AWGEDTSLRKLHADVPVYYYGT 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   K +       +  +   G+    F   L GE  V N L    +     ID A
Sbjct: 232 ADNDDFQAKNIVRTTTGSEFDVEHRGEPIGHFKINLFGEHNVLNTLAVIAVAYFEKIDLA 291

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFG 389
           LV + L     V  RF           +  DYAH  + ++  L   R      +I+ VF 
Sbjct: 292 LVQKELLSYQGVKRRFSKSTVGDN--ILIDDYAHHPSEIKATLDAARQEFPDKKIVAVFQ 349

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTD 417
                           +L LAD  ++T+
Sbjct: 350 PHTYTRTAALLDGFAKSLSLADQVVLTE 377


>gi|239623443|ref|ZP_04666474.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521474|gb|EEQ61340.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 452

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 138/407 (33%), Gaps = 58/407 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVTG 122
           G E  ++S    L      +  +  I ++          L   A+           A+TG
Sbjct: 68  GVELCIISPGIPLDSPFVAVVDDAKIPILGEIELAYQCSLGRLAAITGTNGKTTTTALTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                       +I +     +F +G                    Y +K L  ++   V
Sbjct: 128 ------------EILKAKYEETFVVGNIG---------------APYTSKVL-EMTEDSV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T    E SS  L+   +        +  N+  DH++ H T + Y   K  +      K++
Sbjct: 160 TVA--EVSSFQLE--TIMDFHPDVSAILNITPDHLNRHGTMENYIRIKECITLNQTEKDA 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVEGK 298
              +  DD   +E   +      RV+    + K    F           K + TI V  +
Sbjct: 216 VV-LNYDDPVLREF-GQDPELKPRVIWFSSREKLSDGFCMSGDNIVYCQKGRETILVNVR 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D      L G     N + AA + + +G+  A +   +E  + V  R EFV    R G  
Sbjct: 274 DM----KLLGRHNYENVMAAAAIGLEMGVALADIGRVVESFNPVEHRIEFV--RERTGVR 327

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y + +  +N  +  ++ +R +    +++    G D++      + +    +  + ++   
Sbjct: 328 YYNDSKGTNP-DAAIQALRAMPGPTLLI--AGGYDKNSEYDDWVAEFEGKVRYLVLI--- 381

Query: 419 NPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  +KI      HG    +   +  EA++      +  D +++
Sbjct: 382 ---GQTRDKIAECAKKHGFTEIMYAEDMQEAVQVCAVYADIGDYVLL 425


>gi|85714971|ref|ZP_01045956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
 gi|85698168|gb|EAQ36040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
          Length = 466

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 149/435 (34%), Gaps = 47/435 (10%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V++    L      +S        + V+ +   F      R         +A+TGT+
Sbjct: 67  AALVLAPGVPLTHPSPHWSVLAARQAGVEVIGDIELFCRE---RKRHAPDAPFVAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + V  + + +G      G   T                     LS  + +    
Sbjct: 124 GKSTTTALVAHLMREAGHDVQMGGNIGT-------------------AILSLEAPRRGRV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ +D      +    G   N+  DH+D H T + Y   K RL   + P+   A
Sbjct: 165 HVIEMSSYQIDLA--PSLDPTVGILLNVSPDHLDRHGTIEHYAEVKERLIAGVQPQ-GTA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFL 303
           ++  DD +   +  R   AG  V+ V  +    +   V              E  D   +
Sbjct: 222 VVGVDDRWCAAIADRQERAGRNVVRVSVRQPLAYGVNVEQERIVLASGGARSEIADIGGI 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA  A+   +A+G+   ++ + L     +  R E VG  +    ++V+ +
Sbjct: 282 GSLRGRHNAQNAACASAAALALGVSREILQQDLRSFPGLAHRMEQVGRKAH--VLFVNDS 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +N+ +   K + +      I           G +P  G IA   A    +       E
Sbjct: 340 KGTNA-DATGKALSSFADIFWIA----------GGKPKSGGIASLDAFFPRIRKAYLIGE 388

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-KQ--DVLVVAGKGHETVHIVTNGEK 480
             ++  A  + G   +   G    A+  A          + +V+      +     N E 
Sbjct: 389 AAQE-FAATLEGKVAYEISGTLDVAVPAAARDAEGAGVAEAVVLLSPACASFDQFRNFEV 447

Query: 481 KMSVDCDIIREILGL 495
           +     ++++ + G+
Sbjct: 448 RGDHFRELVQALPGV 462


>gi|113869121|ref|YP_727610.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
 gi|113527897|emb|CAJ94242.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
          Length = 461

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 117/360 (32%), Gaps = 30/360 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++  S +  I + +G +   +     +    Q+  ++           + 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILEDAGYNPGFL-----VGGVPQNFGIS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           ++      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 VTESDFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P +   ++   +     V++R   +      VG   +           +   V   
Sbjct: 208 VRTVPGQGRIVVNGVEESLARVLERGCWSEVEQFGVGDWRESDAAATAAPGKDAFDVWFG 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +      ++ L G     NAL A      +G+ +A  +E L +   V  R E  G    
Sbjct: 268 -DAVQGTVVWDLQGTHNRMNALAAIAAARHVGVPAAQAIESLSRFANVKRRMEVRGVAG- 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLADI 412
           G  +Y D+AH   +++  L  +R       I+              +  +   +L+ AD+
Sbjct: 326 GVTVYDDFAHHPTAIQTTLDGLRRRVGDARILAVLEPRSNTMKLGVMKAQLPASLEQADL 385

Query: 413 AIVT----DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +    D     A +      F + G  ++A+R A       D ++V   G
Sbjct: 386 VFGYGAPAGKDALGWDLAGSLAPLGDKAAAFQDLGTLVQAVRAA---AQPGDHVLVMSNG 442


>gi|194434433|ref|ZP_03066695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1012]
 gi|194417349|gb|EDX33456.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1012]
 gi|332098109|gb|EGJ03082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 155-74]
          Length = 438

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 148/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +                     +     I L   +  L         +
Sbjct: 118 TVTTLVGEMAKAA------------------GGNVGVGGNIGLPALM--LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|224498514|ref|ZP_03666863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes Finland 1988]
          Length = 455

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ADD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|296101007|ref|YP_003611153.1| putative ligase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055466|gb|ADF60204.1| putative ligase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 457

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 120/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVVAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+  +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIILPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLNVDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWGLVGEHNMHNGLMAIAAARHVGVQPADAANALGSFINARRRLELRG-EAH 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RI+ V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGICKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGK 467
              +         P+ I    AE+             ++A+    ++     D ++V   
Sbjct: 383 EVFLLQ-------PQHIPWQVAEVADACIQPAHWSADVDALADMVVKAAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|296272623|ref|YP_003655254.1| Mur ligase middle domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096797|gb|ADG92747.1| Mur ligase middle domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 478

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 128/355 (36%), Gaps = 46/355 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+T + GK+S+ +++ QI +    +       +T++    D     P    +  A +
Sbjct: 158 KIIAITASYGKTSIKNYLYQILKSKFNAYKTPRSVNTLAGLVLDVNRDLPENTQIYIAEA 217

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               QG     +E  S+ L Q               +G  HI+Y +T     + KM + +
Sbjct: 218 GARMQG----DIEEISNFLHQ--------DYAILGQVGEQHIEYFKTLDNIIHTKMEILK 265

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS 294
                            S +++K   +    +L      KF   L    +  +     ++
Sbjct: 266 -----------------SPKMIKAFVHESVPILDYEKIEKFPNDLNITKSNLDGIWFDVN 308

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++ K   F  P+ G F   N      +   +G+    +   L+K+  V  R + +     
Sbjct: 309 IDEKQEHFYAPILGSFNAVNLTACILMAKELGMSIDQIKIALDKIKPVEHRLQKIEA--- 365

Query: 355 GGRIYVDYAHTSN-SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           GG++ +D +   N    +   N+ +   GR +++     +       ++ K      D  
Sbjct: 366 GGKVIIDDSFNGNFEGMLEAVNLCSEYKGRKVIITPGLVESTDETNILLAKEINKHFDFV 425

Query: 414 IVTD---DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T     +  S++ +K +  I+       E         T IE     D+++ A
Sbjct: 426 ILTGSLNTHLFSDNIDKNKQFILKDKSKMEE---------TLIEKTRAGDLILFA 471


>gi|194433904|ref|ZP_03066177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1012]
 gi|194417885|gb|EDX33981.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1012]
 gi|332083669|gb|EGI88887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 155-74]
          Length = 457

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|297379937|gb|ADI34824.1| Hypothetical protein HPV225_0748 [Helicobacter pylori v225d]
          Length = 493

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   + G+F  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 GSVWESFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVWELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|300906078|ref|ZP_07123798.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 84-1]
 gi|301302661|ref|ZP_07208791.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 124-1]
 gi|300402086|gb|EFJ85624.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 84-1]
 gi|300842186|gb|EFK69946.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 124-1]
 gi|315255588|gb|EFU35556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 85-1]
          Length = 445

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 116/356 (32%), Gaps = 30/356 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ A     I ++ G     +     I     +  ++           + L
Sbjct: 94  LAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS-----------ARL 137

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  +  +         R   +          NL  DH D     +A       L  
Sbjct: 138 GESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLV- 196

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V +  
Sbjct: 197 RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVLLDG 253

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + G
Sbjct: 254 E-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EANG 311

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLADI 412
             +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD 
Sbjct: 312 VTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADE 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 372 VFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 424


>gi|126665201|ref|ZP_01736184.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Marinobacter sp. ELB17]
 gi|126630571|gb|EBA01186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Marinobacter sp. ELB17]
          Length = 486

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 95/290 (32%), Gaps = 22/290 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV GT GK++  + +  I +++G  +  +     +    +D  ++         
Sbjct: 123 HQRWVLAVAGTHGKTTTTAMLLWILEQAGFDAGYL-----VGGVPKDLPVS--------- 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L S     +  +         R   +  +       NL  DH D     +A     
Sbjct: 169 --ARLGSSDFFVIEADEYDSAFFDKRSKFVHYRPRTLILNNLEFDHADIFDNVEAIERQF 226

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNK 288
             L    +P +   +    D++    +        + LS+G +         ++ +    
Sbjct: 227 HHLI-RTVPSQGLILRPTLDSHLDNAIALGCWTPQQTLSIGGEANSPSHWRAELLSDDGS 285

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             + +  E       +   G   V NAL A      +G+     +  L +   V  R E 
Sbjct: 286 HFMVLHHEQPVTAVKWAQTGLHNVRNALSAIAAARHVGVTPDYAISALCRFSGVKRRMEL 345

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           +  +  G R+Y D+AH   ++   L  +R       ++           +
Sbjct: 346 L-ADINGVRVYDDFAHHPTAIATTLDGLRKQVGDEPVLALIEPRSNTMKQ 394


>gi|92114314|ref|YP_574242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
 gi|118595648|sp|Q1QVG5|MURD_CHRSD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91797404|gb|ABE59543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
          Length = 455

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 117/360 (32%), Gaps = 41/360 (11%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +    +    I A+TG++ KS+V + + ++ + SG  +   G   T +    D    +P 
Sbjct: 103 ALFVRECRSPIAAITGSNAKSTVTTLLGEMARESGWKTAVGGNLGTPA---LDLLDESPD 159

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                  LS                          +     +F NL  DH+D H   Q Y
Sbjct: 160 AELFVLELSSFQ-----------------LETTPWLGADTAAFLNLSEDHLDRHGDMQGY 202

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCA 284
             AK R+F         A++ A+D  +      A +      +      G++  +     
Sbjct: 203 RAAKQRIFRG----ARHAVVNAEDPAT---WPDAPSCAVTRFTTDMPESGEWGIVDHDGE 255

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               Q     +          +PG     NAL A  +   +G+    +   LE+   +P 
Sbjct: 256 RWLAQGRAAIMPVG----QVRMPGRHNHANALAALAMGAHLGLSREAMCRVLERFPGLPH 311

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R EF+        I         +    +  I +   GR+I+    G  +     P+   
Sbjct: 312 RGEFIVEREGVRWINDSKGTNVGATLAAIAGIGSDLEGRLIL-LAGGDGKGADFSPLAEP 370

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A    +  +   D  R E        +   +P      +   A++ A  +    D +++
Sbjct: 371 LAHHAREAIVFGRDAERLE------QALSARLP-VTRVADLAAAMQRARTIARAGDTVLL 423


>gi|66047331|ref|YP_237172.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae B728a]
 gi|75500772|sp|Q4ZNY8|MURD_PSEU2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|63258038|gb|AAY39134.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 448

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 123/352 (34%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T                    AL
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGT-------------------PAL 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             LS + V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 150 DLLSDE-VELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNGQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 DGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSGLRAPVARHCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +P  +       A+  + ++    D +++
Sbjct: 376 VLL------GRDAELIAQALGDAVP-LLRVDTVQAAVEHSAKLAQCGDAVLL 420


>gi|170731931|ref|YP_001763878.1| UDP-N-acetylmuramate [Burkholderia cenocepacia MC0-3]
 gi|169815173|gb|ACA89756.1| UDP-N-acetylmuramate [Burkholderia cenocepacia MC0-3]
          Length = 461

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 117/365 (32%), Gaps = 38/365 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI- 293
              +P     +        + V+ R       V   G  G +  L     +   ++  + 
Sbjct: 208 VRTVPGVGRIVTNGRSDALERVLAR--GCWSEVERFGVDGGWQALPAEDGVPVDERFAVY 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S  G+  +  + + G+    NAL A      +G+  A   E L     V  R E  G + 
Sbjct: 266 SHAGRVGEVAWQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   +++  +  +R         I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILAVLEPRSNTMKLGVMKSQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLV 463
              +     P   D     A   +        G+R  A       ++  +E     D ++
Sbjct: 385 ADLVFGYGAPTGRD-----ALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVL 439

Query: 464 VAGKG 468
           V   G
Sbjct: 440 VMSNG 444


>gi|217967635|ref|YP_002353141.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336734|gb|ACK42527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 456

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 107/282 (37%), Gaps = 18/282 (6%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SS  L+   ++  +     F N+  DH+D + +   Y  AK R+F     ++  
Sbjct: 160 YFVLEVSSFQLED--IEKFRPFISLFINIYPDHLDRYSSMDEYMLAKSRIFMNQKEEDYA 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y      +E++  A     + L  G++             NK    +S         
Sbjct: 218 ILSYD----QEEIINLAKPYKVKKLFFGFKKHENDGIFYDESRNKVFYKLSERYGSLTIP 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +     + N + +A + + +G++  ++ +  E    +P   + +G     GR++V+ +
Sbjct: 274 KGIWNRILISNFMASALVGLLLGVEERVIEKTGEDFQGIPFALQRIGE--LNGRVFVNDS 331

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +N +      I +I     I++   G +++     +   I        ++        
Sbjct: 332 KATNPVSTS-SAINSI--NSPIILILGGRNKNFDFHELFENIKKSKVRRVVLIG------ 382

Query: 424 DPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
           + ++I  E+           +   +A+R A E+    DV+++
Sbjct: 383 ETKEIMRELSEEYEIPYVIADSLEDAVRRAYEVSEPGDVILL 424


>gi|154485087|ref|ZP_02027535.1| hypothetical protein EUBVEN_02810 [Eubacterium ventriosum ATCC
           27560]
 gi|149734040|gb|EDM50159.1| hypothetical protein EUBVEN_02810 [Eubacterium ventriosum ATCC
           27560]
          Length = 454

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 106/283 (37%), Gaps = 18/283 (6%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T    E SS  L+   +   K    +  N+  DH++ H T + Y + KM + +       
Sbjct: 159 TVTVAEISSFQLE--TIHTFKPDVSAVLNITPDHLNRHYTMECYTDVKMSIAKNQ-DSNQ 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           P ++  +D   +E   +  N      S       ++L+    I+   +    V   +   
Sbjct: 216 PIVLNYEDPILREYAGKLTNRIIWFSSKQKVNPGVYLEGKNIIYADGKKETFVTTTEDTT 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           L  +     V N + A  + I + +   ++ E + K   VP R E+V T +    IY + 
Sbjct: 276 LVGI---HNVENIMAAIAISINMDVPVDIIRETIRKFKAVPHRIEYVETIND--VIYYND 330

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  +N+ +  +K I  ++   I++    G D+              +  + ++       
Sbjct: 331 SKGTNT-DASIKAIEAMSRPTILI--AGGYDKKVSFDDWAEAFGDKVKCLVLL------G 381

Query: 423 EDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  E+I   +  HG    I   +  EA+    +     D +++
Sbjct: 382 QTAEQIADTVKKHGFTNIIFTESLKEAVDECAKNAKPGDAVLL 424


>gi|300788099|ref|YP_003768390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
 gi|299797613|gb|ADJ47988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
          Length = 469

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 135/410 (32%), Gaps = 53/410 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              +V S  +          +   + V+ +      +       +HP + L VTGT+GK+
Sbjct: 63  VVLVVTSPGWRPTSPLLVAAAEAGVEVIGDVELAWRV---GRLREHPPSWLVVTGTNGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    ++ I   +G ++   G                        A       G   ++V
Sbjct: 120 TTVGMLESILNAAGSNAVACGNIG--------------------YAALDAVRAGYDVLAV 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L  H    +   A +  NL  DHID+H +   Y  AK R++         A+  
Sbjct: 160 ELSSFQL--HWSSTLAPDAAAVLNLAEDHIDWHGSMDEYAAAKGRVYTR----AKVAVHN 213

Query: 248 ADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           ADD +S  +  + A     RV       +   L  V  +   +      E          
Sbjct: 214 ADDDWSTRIAAEHAPEGTPRVGFQLDTPRAGELGVVEDLLVDRAFVADPENSAEALATLA 273

Query: 307 PGE----FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                    V NAL AA L  A G+    V + L +    P R   V      G  YV+ 
Sbjct: 274 DVRPAGPHNVANALAAAALARAHGVSPDAVAKGLREYQPAPHRA--VEVAEVAGVRYVND 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  +N          ++ +   IV    G  +      ++  IA  L  + ++  D+P  
Sbjct: 332 SKATNP----HAAAGSLRAHASIVWIAGGQLKGASVDELVSSIAGRLRGVVLLGVDSP-- 385

Query: 423 EDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVVA 465
                I A +    P       R         A+  A  M    DV+++A
Sbjct: 386 ----VIAAAVARHAPDVPVNSLRPGDDEPMTAAVSAASAMARPGDVVLLA 431


>gi|330003489|ref|ZP_08304644.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
 gi|328536942|gb|EGF63238.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
          Length = 457

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 121/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+  +D   K+VM  A         VG QG     KK+ A  ++ +V + 
Sbjct: 209 -RIVPGKGKIILPENDINLKQVM--AMGCWSEQELVGEQG-HWQAKKLNADASQWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
           G  +Y D+AH   ++   L+ +R    G   I+                  +A  L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++  +    + T  EM     +  D ++V   
Sbjct: 383 EVFLLQ-------PQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|121603914|ref|YP_981243.1| cyanophycin synthetase [Polaromonas naphthalenivorans CJ2]
 gi|120592883|gb|ABM36322.1| cyanophycin synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 862

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 118/360 (32%), Gaps = 34/360 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +    GL +   G T+T   +    +  +        A + L    V     E + 
Sbjct: 486 LIAHLLAAHGLRT---GMTNTDGVYINGRQTDSGDCSGPKSARNVLMHPDVDAAVFEVAR 542

Query: 192 HGLDQHRLDGIKLIAGSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            G+ +  L   +      TN+G  DH+   Y  T +     K  + + + P    A++ A
Sbjct: 543 GGVLREGLGFDRCEVAVVTNIGSGDHLGLNYITTVEDLAVLKRVIVQNVAPT-GYAVLNA 601

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFD-- 301
            DA    V + A     +V+  G             +    +     + ++ EG   +  
Sbjct: 602 ADA---IVTEMAQACPGKVIFFGADRHHPLMATHRAQGKRTVFVDGPMLVAAEGSRVERI 658

Query: 302 ------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNS 353
                         FQV N + A     A+ +    +   L             F   + 
Sbjct: 659 ALSGIPVTRAGSIGFQVENVMAAVAAAWAVNVSWDTIKSGLASFACDTHNAPGRFNVMDY 718

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  +  DY H  +++  ++  +  + + R  VV    GDR          I     D  
Sbjct: 719 GGATVIADYGHNPDAMLALVAAVNAMPAQRRSVVISGAGDRRDSDITNQTVILGAAFDDV 778

Query: 414 IVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVVA 465
           I+  D   R     ++ A +  G+ G   +  RI+       AI TA+  L   D+ +V 
Sbjct: 779 ILYQDAAQRGRADGEVMALLREGLKGA-SRTQRIDEIRGEFVAIDTALARLQPGDLCLVL 837


>gi|283834853|ref|ZP_06354594.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Citrobacter youngae ATCC 29220]
 gi|291069104|gb|EFE07213.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Citrobacter youngae ATCC 29220]
          Length = 458

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 118/364 (32%), Gaps = 40/364 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG   H +      +  +  
Sbjct: 207 LV-RIVPGQGRIIYPENDINLKQTM--AMGCWSEQELVGEQG---HWQAKKLTTDASEWE 260

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + ++G++   + + L GE  ++N L+A      +G+  A     L        R E  G 
Sbjct: 261 VWLDGENVGVVKWGLVGEHNMHNGLMAIAAARHVGVVPADAANALGSFINARRRLELRG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALD 408
            + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L 
Sbjct: 320 EANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLG 379

Query: 409 LADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVV 464
            AD   +         P  I    AE+             ++A+    ++     D ++V
Sbjct: 380 RADEVFLLQ-------PPHIPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILV 432

Query: 465 AGKG 468
              G
Sbjct: 433 MSNG 436


>gi|119469212|ref|ZP_01612196.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
 gi|119447464|gb|EAW28732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
          Length = 444

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 145/395 (36%), Gaps = 53/395 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+VS   SL+  +     N+ + V+ +   F  +        + + ++AVTG++GKS+V 
Sbjct: 75  IIVSPGLSLKTPAIASAINSGVEVIGDVELFARI--------NTKPVVAVTGSNGKSTVV 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    + + +G +    G   T                    A+  L +       +E S
Sbjct: 127 TLAYDVLKAAGFNVALGGNIGT--------------------AVLDLLNDDFDVYVLELS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD      +K ++ +  N+  DH+D + + QAY ++K+ ++          ++  DD
Sbjct: 167 SFQLD--TTTSLKSVSATVLNVSEDHLDRYDSYQAYIDSKLSIYNG----TQCIVVNEDD 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K+    + +A  ++     QGK+   +  C+ +        +          + G+ 
Sbjct: 221 ---KQTHPSSSSATAKIGFGTQQGKYCLGQHNCSTYFFANNEAFLP----VDTLAVVGKH 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L    L     I      + L +   +  R +FV T   G + + D   T+    
Sbjct: 274 NYLNTLAVMALLSPFNISKEAYKKALNEFSGLAHRCQFV-TQQHGVKYFNDSKATNVGAT 332

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +   +     +  +IV+   G  +     P+   +   +  +     D            
Sbjct: 333 IAAIDSLATETQNLIVI-AGGDAKGADLNPLKPYLQKHVKALICFGKD----------AK 381

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +++          N  EA+  A ++ +  +V+++A
Sbjct: 382 KLVALSSKSHLTNNMSEAVNLAKQLSSPGNVVLLA 416


>gi|289612968|emb|CBI59981.1| unnamed protein product [Sordaria macrospora]
          Length = 88

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 50/76 (65%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           MG++    AD+AIVTDDN R+ED   IRA+++ G P   E G+R  AIR A +M    D+
Sbjct: 1   MGEVVATHADVAIVTDDNSRTEDAATIRAQVLEGAPNATEIGDRRAAIRAACDMAQAGDI 60

Query: 462 LVVAGKGHETVHIVTN 477
           +++AGKGHE   IV +
Sbjct: 61  VLIAGKGHEQGQIVGD 76


>gi|241896081|ref|ZP_04783377.1| UDP-N-acetylmuramate--L-alanine ligase [Weissella paramesenteroides
           ATCC 33313]
 gi|241870681|gb|EER74432.1| UDP-N-acetylmuramate--L-alanine ligase [Weissella paramesenteroides
           ATCC 33313]
          Length = 449

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 103/358 (28%), Gaps = 46/358 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG  +       + R          +     
Sbjct: 112 IGVAGAHGKTSTTGLLSHVLSGIAPTSYLIGDGT--GKGVPNARFFIFEADEYRRHFKDY 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY+       +A    F   
Sbjct: 170 -------------------------TPDYAIMTNIDFDHPDYYTGIDDVRSA-FEDFGNN 203

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISV 295
           + K   A  + DD   +++          V   G   +    +   +             
Sbjct: 204 VKKGIFA--WGDDEQLRKI-----KVSVPVYYYGTNPETDDFYATNIKRSTKGSSFDAYY 256

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             +   +F  PL G+  V N L    +     I++ L+ E L     V  RF        
Sbjct: 257 HDEFLGNFKVPLFGQHGVLNTLAVVAVSYFEEIETQLIQEELLTFQGVKRRFTEKHIG-- 314

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              I  DYAH  + +   +   R      ++  VF                 ALDLAD  
Sbjct: 315 PVTIIDDYAHHPSEITATIDAARQKYPDRKLTAVFQPHTFSRTIAYQDDFAKALDLADNV 374

Query: 414 IVTDDNP-RSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +T+      E    I  A++   I  F    +  E    A  + ++  V V  G G 
Sbjct: 375 FLTEIFASARETAGAISSADLGKKISKFEGIVSPTE---VAPLLADEDGVFVFMGAGD 429


>gi|152973099|ref|YP_001338245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957948|gb|ABR79978.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 445

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 121/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 149 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 196

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+  +D   K+VM  A         VG QG     KK+ A  ++ +V + 
Sbjct: 197 -RIVPGKGKIILPENDINLKQVM--AMGCWSEQELVGEQG-HWQAKKLNADASQWEVLLD 252

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 253 GE-KVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EAN 310

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
           G  +Y D+AH   ++   L+ +R    G   I+                  +A  L  AD
Sbjct: 311 GVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGRAD 370

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++  +    + T  EM     +  D ++V   
Sbjct: 371 EVFLLQ-------PQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILVMSN 423

Query: 468 G 468
           G
Sbjct: 424 G 424


>gi|332749822|gb|EGJ80235.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2747-71]
 gi|333011221|gb|EGK30635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-272]
          Length = 381

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 27  RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 70

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 71  ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 130

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 131 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 186

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 187 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 244

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 245 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 304

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 305 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 360


>gi|242238098|ref|YP_002986279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya
           dadantii Ech703]
 gi|242130155|gb|ACS84457.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech703]
          Length = 437

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 145/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        +   + +V +   F          +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALSTPVLCDAAEAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G +    G                        AL+ L  Q      +
Sbjct: 117 TVTTLVGEMARAAGWAVGVGGNIGL-------------------PALALL-KQESQLYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+  R   +   A +  N+  DH + +    Q Y  AK+R++E      +  I+
Sbjct: 157 ELSSFQLETTR--SLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYEH----ANVCIV 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  +      A  R LS G      HL +      + +V + V+G+        
Sbjct: 211 NADDALTMPI----RGADPRCLSFGVDVGDYHLNR-----QQGEVWLRVKGERVLNTREI 261

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+GI  A  L  L     +P RF+ V        +    A 
Sbjct: 262 KLTGQHNYTNALAALALADAVGIPRASALTALTTFTGLPHRFQLVMDGKGVRWVNDSKAT 321

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 322 NVGSTEAALNGL--HLDGTLHLLL-GGDGKSADFSPLQHYLQGDRIRLYCFGRD---GAQ 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     +A+R     +   D++++
Sbjct: 376 LAALRPEIAD------QTETMEQAMRLIAGRVRSGDMVLL 409


>gi|296120286|ref|YP_003628064.1| Mur ligase middle domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296012626|gb|ADG65865.1| Mur ligase middle domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 569

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 148/423 (34%), Gaps = 39/423 (9%)

Query: 71  IVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+ S+A    D    A   +  P +        L+         +    L + GT GKS+
Sbjct: 121 IIHSAAIPPADAGLQAARLAGIPAIP---YHIALAHLI------NSSRSLCIAGTHGKST 171

Query: 129 VASFVQQICQRSGLSSFQIGPTST----ISSFAQDNRLTTPSPIY-LAKALSYLSSQG-- 181
             + V  +   S          +T     +SF     L  P P+    +A++ L   G  
Sbjct: 172 TTAMVAWMLSSSLAPEITDSIVNTNHPWRASFIMGGELIAPLPLSKPDQAMATLHRSGSY 231

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V    + A +    QH L   +    +  +   DH D   ++  + +A  + F   +  +
Sbjct: 232 VEGDWLVAEACEYRQHFLAY-EPELAAILSCEPDHFDCFASEAEFGDAFSK-FAARVKPD 289

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTISVE 296
              +  AD   +   ++ A NA  +V + G             +++  +  K +  +   
Sbjct: 290 GRLVTAADSPMA---LQAAENAQAQVETFGLSMGNAKYPHWQARQIQRLGAKSRFELFYC 346

Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK        +PG   + NAL A  L    G      ++ L     +  RFE+ G   RG
Sbjct: 347 GKHRASVQLQIPGRHNILNALAALALTEQTGCPLPHRIQALASFQGIRRRFEWKGLW-RG 405

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH   ++   L+  R I   R I + F                 +L LAD   
Sbjct: 406 IHLIDDYAHHPTAVIETLRTARQIFGSRRIALAFEPHQVSRLQALLPEFAQSLALADQVF 465

Query: 415 VTDDNPRSEDPEK----IRAEIIHGIPGF---IEKGNRIEAIRTAIEM-LNKQDVLVVAG 466
           +       E        +  ++   +       E    ++ +R+++E      DVL+ AG
Sbjct: 466 IAPVFAAREGNSALKHTLIQDLAQRVRSAGIPTEVCGTLDHLRSSVEHKAGTIDVLITAG 525

Query: 467 KGH 469
            GH
Sbjct: 526 AGH 528


>gi|91785243|ref|YP_560449.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase, MurC [Burkholderia
           xenovorans LB400]
 gi|91689197|gb|ABE32397.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase, MurC [Burkholderia
           xenovorans LB400]
          Length = 464

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 117/360 (32%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 150 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAI-ETQFHHL 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +   + V+ R       V   G QG +  L     +   ++  + 
Sbjct: 209 IRTVPGIGRIVTNGREDALERVLTR--GCWSEVERFGVQGGWETLPAEDGVPVDERFAVY 266

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 267 HNSERVGAVEWQVQGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVKRRMEVRG-SV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  L  +R         I+              +  ++   LAD
Sbjct: 326 DGVTVYDDFAHHPTAIETTLAGLRARVGRDNTRILAVLEPRSNTMKLGVMKAQLPASLAD 385

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
              +     P   D       E +  + G  +  + ++A ++  +      D ++V   G
Sbjct: 386 ADLVFGYGAPTGRDALGWNLGEALAPLGGKAQAFDNLDALVKAVVHTARPGDQILVMSNG 445


>gi|293392861|ref|ZP_06637179.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
           odorifera DSM 4582]
 gi|291424720|gb|EFE97931.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
           odorifera DSM 4582]
          Length = 439

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 143/401 (35%), Gaps = 60/401 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALASPALSAAADAGVDIVGDVELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G +    G                         +  L  Q      +
Sbjct: 118 TVTTLVGEMAKAAGWAVGVGGNIGL--------------------PVLELLRQEYQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH+D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTYSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL +           + V G+        
Sbjct: 212 NADDALTMPV----RGADPRCISFGADVGDYHLNRQLGETW-----LRVHGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+ I  A  L  L     +  RF+ V  ++    I    A 
Sbjct: 263 KLSGRHNYTNALAALALADAVNIPRASSLTALTTYAGLAHRFQRVLDHNGVCWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLQ--VDGTLHLLL-GGDGKSADFSPLTRYLQGDHIRLYCFGRDG----- 374

Query: 425 PEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
                A++    P    + +   +A+R    ++   D++++
Sbjct: 375 -----AQLAQLRPDVATQTDTMEQAMRAIAAVVQPGDMVLL 410


>gi|317049721|ref|YP_004117369.1| UDP-N-acetylmuramate [Pantoea sp. At-9b]
 gi|316951338|gb|ADU70813.1| UDP-N-acetylmuramate [Pantoea sp. At-9b]
          Length = 451

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 120/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  GL    I     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMAAWILEACGLEPGFI--IGGVPGNFDVSAKLGKSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+                               NL  DH D     +A       L 
Sbjct: 161 EYDSAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLRAIQKQFHHLI 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   ++   D   K+VM  A        +VG  G     KK+    ++ +  + 
Sbjct: 209 -RIVPGQGKILLPEHDHNLKQVM--AMGCWSEQETVGDNG-HWQAKKLTPDASRWEAWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              K  +  + L GE  ++N L+A      +G+      + L +      R E  G    
Sbjct: 265 -GAKVAEVNWGLVGEHNMHNGLMAMAAARHVGVKPEDAGDALGRFINARRRLELRG-EVN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
             ++Y D+AH   ++   L  +R+   G  RI+ V          G        +L  AD
Sbjct: 323 AIKVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGVSKNDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P  I  ++       I+  +    I T +EM        D ++V   
Sbjct: 383 EVFLFQ-------PHHIPWQVSDVADACIQPAHWSADIDTLVEMVAKVAQPGDNILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|229820895|ref|YP_002882421.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
 gi|229566808|gb|ACQ80659.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
          Length = 473

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 143/475 (30%), Gaps = 115/475 (24%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G + + GH     A+  GA+ +VVSSA    +          + V+  +   L+  A+  
Sbjct: 46  GARVEVGHR--AAAVE-GADVVVVSSAIRGDNPELVRARELGVEVLHRS-AALARIANE- 100

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++AV GT GK++ ++ +      +GL      PT+ I +  +D      S   
Sbjct: 101 -----RELVAVAGTHGKTTTSAMLAVALTEAGLD-----PTAAIGAVVRD----WSSGAR 146

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--------- 220
           +     +++    +  S  A                    TN+  DH+D++         
Sbjct: 147 VGAGRVFVAEADESDSSFLAY------------APRVAVVTNIEADHLDHYADTDALVEA 194

Query: 221 ---------------------QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                                 + +    A                              
Sbjct: 195 FREFARRIVSGGLLVACADDPGSLELARWA-----------------------------T 225

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--------ISVEG---KDFDFLFPLPG 308
           A     R   VG +        V     +   T        ++ +G            PG
Sbjct: 226 AQGIRVRTYGVGGEPLDPASDHVRITDLELDATSARAEVTLVTADGLGPGPVRLRLAAPG 285

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V +A+      + +G D+  +   L +      RFE  G    G R+  DYAH    
Sbjct: 286 RHTVLDAVAGWAAGLELGADAEQLAHGLARFTGTARRFETRGEAG-GVRVVDDYAHNPTK 344

Query: 369 L-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE- 426
           +   +      +  GR++V+F                 ALD AD+ +VT      EDP  
Sbjct: 345 VRAALEAARLAVGDGRVLVLFQPHLYSRTAAFATAFADALDAADVVVVTGIYGAREDPAP 404

Query: 427 KIRAEI----------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            + + +            G   F    +R+ A           D+++  G G  T
Sbjct: 405 GVTSALVTQAEPPGRAARGAAPFALVPDRLAAAHEIAGRARPGDLVLTVGAGDVT 459


>gi|220918632|ref|YP_002493936.1| UDP-N-acetylmuramate [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956486|gb|ACL66870.1| UDP-N-acetylmuramate [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 474

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 122/376 (32%), Gaps = 37/376 (9%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           F +       G  P + + V GT GK++ ++ +  +   +G             SF    
Sbjct: 99  FPAALGELFIG--PRHGVVVVGTHGKTTTSAMMGFVLHHAGRDP----------SFLVGG 146

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                   +   +  +   +G  + +          H     +     FT+   DH D +
Sbjct: 147 VTRDFDSNFRLGSGPHFVVEGDEYDTAYFDKGPKFLHY----RPRTAIFTSCELDHADIY 202

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           + +  Y +A    F +LLP +      A     + +  RA         V   G     +
Sbjct: 203 RDEAHYESA-FERFADLLPPDGFLATCAAYESVRRISARAR-CRIETYGVDVAGADWEAR 260

Query: 281 KVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +    +  + T+   G    +   P+ G   V NAL  A    A+G+  A +   L   
Sbjct: 261 GLSLGPDGARFTLVRRGAPLAEVHLPVGGAHNVENALGVAAAATALGLSPAEIAAGLGAF 320

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQ 396
           H V  R E  GT   G  +  D+AH   +++  L  +R    G  ++          R  
Sbjct: 321 HGVRRRQEVRGTAG-GVTVIDDFAHHPRAVKKTLAAVRGSFPGARMLAAFEPRSNTSRRN 379

Query: 397 GKRPIMGKIAL-DLADIAIVTDDNPRSEDPEKIRAEI--------IHGIPG-FIEKGN-R 445
             +      A    A    +    P    PE  R ++         HG+P    +  +  
Sbjct: 380 LHQADYSDPATWSGAAEVFILRPAPTDRVPEAERLDVDAVVRALAAHGLPARVFDAVDPL 439

Query: 446 IEAIRTAIEMLNKQDV 461
           +EAI          DV
Sbjct: 440 VEAIA---ADARPGDV 452


>gi|320177642|gb|EFW52632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella boydii ATCC 9905]
          Length = 457

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 118/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L    +  +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDLFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|241664199|ref|YP_002982559.1| UDP-N-acetylmuramate [Ralstonia pickettii 12D]
 gi|240866226|gb|ACS63887.1| UDP-N-acetylmuramate [Ralstonia pickettii 12D]
          Length = 461

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 136/413 (32%), Gaps = 44/413 (10%)

Query: 67  GAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+  V+ +  S  +    A +  N P +               +  +  + +LAV GT 
Sbjct: 61  GADLYVIGNVISRGNPLMEAILDRNLPYI------SGPQWLGDNVLRQ--KWVLAVAGTH 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  + Q +G +   +     +    ++  L+           + L+      
Sbjct: 113 GKTTTTSMLAWVLQDAGYNPGFL-----VGGVPRNFGLS-----------ARLTESNFFV 156

Query: 185 VSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +  +         R   +  +       NL  DH D      A    +       +P + 
Sbjct: 157 IEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHLVRTVPGQG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-D 301
             ++   +   K V++R       V   G +G      K+  + +     +   G+    
Sbjct: 216 RLLVNGREDSLKRVLER--GCWSEVEQFGAEGGSGW--KIANLSDDDSFDVVFNGQPLGR 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             + L G+    NA+ A      +G+  A  +E L +   V  R E  GT      +Y D
Sbjct: 272 VRWALQGDHNRMNAVAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-VNDVTVYDD 330

Query: 362 YAHTSNSLEMILKN-IRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAI-VTDD 418
           +AH   ++   ++   R +  GRI+ V          G        +L  AD        
Sbjct: 331 FAHHPTAIRTTIEGLRRRVGEGRILAVLEPRSNTMKLGVMKQTLPDSLSGADQIFAYGAA 390

Query: 419 NPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           N R     D     A +      F +    ++A+  A       D ++V   G
Sbjct: 391 NGRDAIGWDLAGALAPLGQRAKAFSDLTALVDAVTAA---ARPGDHVLVMSNG 440


>gi|228476503|ref|ZP_04061193.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus salivarius
           SK126]
 gi|228251924|gb|EEK10970.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus salivarius
           SK126]
          Length = 442

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 94/301 (31%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +  + +    +S+ IG  +   S      +               
Sbjct: 106 FGVAGAHGKTSTTGLLSHVMKNITDTSYLIGDGTGRGSANAQYFVFESD----------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY  +    F+A     +++
Sbjct: 155 ----------EYERHFMPYH------PAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D + +++   A      +   G++         +          +  +
Sbjct: 199 ---QKGLFVYGEDPHLRKITANAP-----IYYYGFEENDDFMATDIVRTTTGSNFKVKHD 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   +F  P  G   + NA    G     G D  LV EHL+    V  RF     +  G
Sbjct: 251 GQILGEFHVPAYGRHNILNATAVIGNLYVAGFDMDLVAEHLKTFSGVKRRFTEKIIS--G 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 309 TVVIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAEALNEADAVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|184155796|ref|YP_001844136.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus fermentum IFO
           3956]
 gi|227515610|ref|ZP_03945659.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus fermentum
           ATCC 14931]
 gi|260663487|ref|ZP_05864377.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus fermentum
           28-3-CHN]
 gi|229620037|sp|B2GDC4|MURC_LACF3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|183227140|dbj|BAG27656.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus fermentum IFO
           3956]
 gi|227086040|gb|EEI21352.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus fermentum
           ATCC 14931]
 gi|260552028|gb|EEX25081.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus fermentum
           28-3-CHN]
          Length = 437

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 104/361 (28%), Gaps = 47/361 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G  GK+S    +  +      +S+ IG    +     D R                
Sbjct: 106 IGVAGAHGKTSTTGLLAHVLSNVEQTSYLIGD--GVGVGVADARFFVFEAD--------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY +      ++    FE  
Sbjct: 155 ----------EYRDHFLAYH------PDYAIMTNVDFDHPDYFKDLADVKDS----FETY 194

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
             +    +     A+ ++   R  N    V   G           +    +        +
Sbjct: 195 GRQVKKGLF----AWGEDKSLRDLNVDVPVYYYGTAPDDDFRAANIVRTPDGSTYDAYYK 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   L GE  V N+L    +     ID   +   L     V  RF         
Sbjct: 251 DQKLGTFTIHLYGEHSVLNSLAVVAVAYMEKIDLEKIKAELANFSGVKRRFAEEDIADM- 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            ++  DYAH  + ++  +   R       ++VVF                 +L  AD   
Sbjct: 310 -KVIDDYAHHPSEIKATIDAARQKFPQKELVVVFQPHTYSRLAAYLTEFGQSLSRADKVF 368

Query: 415 VTDDNP--RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ET 471
           VT      R ++      ++   IPG  +      +I   +   +   V+V  G G  E 
Sbjct: 369 VTPIFGSIREQNGSVSAKDLEDLIPGSEDIDQ--ASITKLLAYHDA--VVVFMGAGDIEK 424

Query: 472 V 472
            
Sbjct: 425 Y 425


>gi|16763236|ref|NP_458853.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144715|ref|NP_808057.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213584532|ref|ZP_03366358.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213649722|ref|ZP_03379775.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289829256|ref|ZP_06546868.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25293612|pir||AC1056 murein peptide ligase (EC 6.3.2.-) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505544|emb|CAD06896.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140354|gb|AAO71917.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 457

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDTSEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 383 EVFLLQP-PHI--PWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|326336748|ref|ZP_08202916.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325691218|gb|EGD33189.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 452

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            FIP+   Q    +V + A   +             V   + + L +             
Sbjct: 56  DFIPKDYTQENTLVVYTPAIPKEHKQLLFFQKNNYKVCKRS-EVLGMITE------DSFC 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ +S +  I             ++ +    ++ +             S  
Sbjct: 109 LAVAGTHGKTTTSSILAHIL-----VENHAPISAFLGGICENFQ-------------SNF 150

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G     VEA        RL          T +  DH+D +   + +     + F   
Sbjct: 151 ICKGTKLTVVEADEFDRSFLRLS---PTIACITAVDADHLDIYGNAEEFLRG-FKDFTHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           +      II     +               L+ G   G    +  V   +      I   
Sbjct: 207 IKPNGKLIIRKGLPFEG-------------LTYGINDGSDYQITHVKVQNGGYLFDIEFT 253

Query: 297 GKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +        D     PGE  + NAL A  +    G     + + L     V  RF ++
Sbjct: 254 NPETKEKQLVKDCTLFRPGEHHLLNALAAVAVAHQAGYPLTHLAQALTSFKGVKRRFSYI 313

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALD 408
             N+       DYAH    L  +   +R++   + I ++F                 +L 
Sbjct: 314 -INTPEQVFIDDYAHHPTELNALYNGVRSMYPNQQITILFQPHLFSRTRDFANGFAKSLS 372

Query: 409 LADIAIVTDDNPRSEDP-EKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             D  I+ D  P  E P E I ++ +++ I    +   +  AI   +   N   +LVVAG
Sbjct: 373 QFDRIILLDIYPARELPIEGITSQWLLNKIENPNKILIQKSAITDYLAK-NPSPILVVAG 431

Query: 467 KGH 469
            G 
Sbjct: 432 AGD 434


>gi|163741576|ref|ZP_02148967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385310|gb|EDQ09688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
          Length = 465

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 135/388 (34%), Gaps = 45/388 (11%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
           A + +  P  V ++   F    A+R + +  +   I+AVTG++GKS+  + +  I Q +G
Sbjct: 89  AALVAGVP--VDNDIGLFFRSVATRGWERFDQAPRIVAVTGSNGKSTTVALLHHILQEAG 146

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             S   G    I     D        I +                +E SS+  D  R   
Sbjct: 147 RESQLAG---NIGRGVLDIDPPGSGGIVV----------------LELSSYQTDLAR--A 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMKR 259
           +      FTNL  DH+D H     YF AK RLF E  P  +   +  D+    + ++ + 
Sbjct: 186 LTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAIIGVDEDEGLYLAGQLSEA 245

Query: 260 AHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           A +     +S   +  G    +       ++ +        D   +  LPG     NA  
Sbjct: 246 ASDDRVIRISASRKLTGPGWQVFARKGFLSEYRKGRQAASIDLRQMQGLPGAHNHQNACA 305

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A     A+G+   L+ + L     +P R + + T+     +    A   +S    L    
Sbjct: 306 AYAAARALGLAPRLIEDALASYPGLPHRSQTIATHEGVRYVNDSKATNLDSAVKALSAFD 365

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            I     I     G ++D G   + G+         I         +      ++   + 
Sbjct: 366 NIR---WIC---GGLEKDGGLEALRGQTGKVRKAYVI-------GREAAGFAMQLD--VE 410

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +      EA+  A       D +++A
Sbjct: 411 AEVCIT-MAEAVARASAEAEAGDTVLLA 437


>gi|206579371|ref|YP_002240813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae 342]
 gi|288937467|ref|YP_003441526.1| UDP-N-acetylmuramate [Klebsiella variicola At-22]
 gi|290512207|ref|ZP_06551574.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. 1_1_55]
 gi|206568429|gb|ACI10205.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae 342]
 gi|288892176|gb|ADC60494.1| UDP-N-acetylmuramate [Klebsiella variicola At-22]
 gi|289775202|gb|EFD83203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. 1_1_55]
          Length = 457

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 121/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+  +D   K+VM  A         VG QG     KK+ A  ++ +V + 
Sbjct: 209 -RIVPGKGKIILPENDINLKQVM--AMGCWSEQELVGEQG-HWQAKKLNADASQWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
           G  +Y D+AH   ++   L+ +R    G   I+                  +A  L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++  +    + T  EM     +  D ++V   
Sbjct: 383 EVFLLQ-------PQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|282891539|ref|ZP_06300030.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498507|gb|EFB40835.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 449

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 153/428 (35%), Gaps = 57/428 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S    L      +     I ++           +         ++ +TGT+GK++V 
Sbjct: 74  VVTSPGVPLTHPVLQLAQAKNIKILGEIELAFRSLRN--------KLIGITGTNGKTTVT 125

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +   +G+ +  +G                          + ++    T + VE S
Sbjct: 126 LLLTHLLNYAGIPAKAVGNVG-------------------EPLSAEITCSSETVLVVELS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   L   +L  G   N+  DH+D + + + Y  +KM++       +  A +Y ++
Sbjct: 167 SFQLD--TLQSRQLDMGVILNITPDHLDRYASMEDYALSKMKIKS---CIKEGAPLYMEE 221

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N  C +    +    +  ++   ++      + +E ++           
Sbjct: 222 KAFQNYGFLQANFPCHLYGYSHNCHLMSDQQHLFLNKNIDSILPIEYRE-------TKSH 274

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NS 368
           ++ N + A GLC  +GID+ L  E +   +  P R E V          V Y + S   +
Sbjct: 275 RLENLMAAYGLCREMGIDATLFWEGVSTFNTPPHRIEKVAIFKN-----VSYYNDSKGTN 329

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           ++ +++ I TI     I++   G D+     P +   A  +  I  +       +  EK+
Sbjct: 330 IDAVMRAIETIEGP--IILIAGGVDKGTDFSPWISAFANKVKHICAI------GQATEKL 381

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
              +       +   N  +A++ A  +    D ++++  G  +  +  N   +     + 
Sbjct: 382 DRTLSKSF-NVVRCQNMHDAVKHASSLAYPGDNVLLS-PGCASYDMFENYAHRGKTFREA 439

Query: 489 IREILGLI 496
           +   L  I
Sbjct: 440 V-NALASI 446


>gi|323126630|gb|ADX23927.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 443

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 108/348 (31%), Gaps = 46/348 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++V +A+   + +    +    +      +FL  F  +           V G  GK+S  
Sbjct: 65  LIVGNAFREDNNNEVAYAIQHEIPFKRYHEFLGDFMKQFI------SFGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +S+ IG  +   S      +                         E  
Sbjct: 119 GLLSHVLKNITDTSYLIGDGTGRGSANAQYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY        +A     +++   +    +Y +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQV---KKALFVYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              K++   A      +   G++ G       +    +    T+  +G+    F  P  G
Sbjct: 209 QELKKITANAP-----IYYYGFEEGNDFVTSDIARTTHGSDFTVKHDGQIIGRFHVPAYG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA          GID  LV EHL+    V  RF     N     I  D+AH    
Sbjct: 264 RHNILNATAVIANLFVAGIDMELVAEHLKTFSGVKRRFTEKLINE--TIIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   +   R    +  I+ +F                +AL+ AD   +
Sbjct: 322 IVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFALALNEADSVYL 369


>gi|297623835|ref|YP_003705269.1| UDP-N-acetylmuramate/alanine ligase [Truepera radiovictrix DSM
           17093]
 gi|297165015|gb|ADI14726.1| UDP-N-acetylmuramate/alanine ligase [Truepera radiovictrix DSM
           17093]
          Length = 459

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 136/429 (31%), Gaps = 56/429 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   P  +A  A+ +V S+A                     T + + L A  L  +   
Sbjct: 53  GHD--PAHVAH-ADLLVTSTAIPEAHPEVQAARAQG----KRTLRRIELLAELLNRR--- 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AVTGT GKS+    +  +  ++G     +     +++   + R    + I       
Sbjct: 103 RSVAVTGTHGKSTTTGMIATLFLKAGCDP-SVLVGGHLAALGSNVRYGHGAWI------- 154

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--------DYHQTQQAYF 227
                      V+ S  G        +       TNL  DHI        +YH + +A  
Sbjct: 155 --------IAEVDESDPG-----FAALPSELAVVTNLEDDHIAGDFSERRNYHASLEALE 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            A               +  AD      ++    NA    ++ G      +   VCA+  
Sbjct: 202 AATASFAAR----SERVLFCADWPSLGPLLGGLPNA----VTYGLSEGASYRASVCALSA 253

Query: 288 -KQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                T         +    +PG   V NA  A       G+D     EHL     V  R
Sbjct: 254 AGSHFTFHAPHTPPVEVRLLVPGRHNVQNAAAALAAAHLAGLDLKAAAEHLSTFGGVGRR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           ++  G + RG  +  DYAH    + + L+  R  T  R+  V          +       
Sbjct: 314 WQRRG-SVRGALVIDDYAHHPTEVRVTLEAAR-HTGRRVRAVLQPHRWVRTARHWPALAD 371

Query: 406 ALDLADIAIVTDDNPRSED--PEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQD 460
           A  LAD  +V +     E   P      I+  +          +   A     E L + D
Sbjct: 372 AAALADEVLVLEVYGAGEAAIPGVSARRIVERLQAAGTPASFHSAASAQSYLAESLEQND 431

Query: 461 VLVVAGKGH 469
           +++  G G 
Sbjct: 432 LVITLGAGD 440


>gi|218886060|ref|YP_002435381.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226711908|sp|B8DP81|MURD_DESVM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218757014|gb|ACL07913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 445

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 99/341 (29%), Gaps = 64/341 (18%)

Query: 53  KEDG--HLFIPQAIAQG---------------AEAIVVSSAYSLQDFSATIRSNTPILVV 95
             DG    F+  A   G               A A+V S   ++      +         
Sbjct: 46  NADGVPADFVRWAAEAGVEIATGDHAPTQFEGARAVVPSPGMAVSKLRPLLAQG------ 99

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +  + ++           E +LAVTGTSGK++  S    + +  GLS F  G   T  S
Sbjct: 100 PDAPEIMAEMELAWRQLDGEPVLAVTGTSGKTTTVSLCAAMLRAQGLSVFLGGNIGTPLS 159

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
               +     +                  + +E SS  L        +       N+  +
Sbjct: 160 EYVLSVAHGGADGQGR----------ADVLVIEISSFQLQACTT--FRPRVAMLLNISEN 207

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+DYH     Y +AK RLF   + +   AI      + + V         +  ++ +   
Sbjct: 208 HLDYHADMAEYIDAKFRLF-RCMEEGDLAI------FGQGVRDLVAARDLKPRTLFFDAA 260

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                + C                      L G     N   A   C   G+      + 
Sbjct: 261 ARRFPRTC----------------------LLGGHNQANIEAAWQACREFGVTPEAAEKA 298

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +     +  R E V   +    +      T  +L + L+  
Sbjct: 299 VADFAPMEHRLEAVAERNGVLWVNDSKCTTVEALRVALQAF 339


>gi|116328899|ref|YP_798619.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116330494|ref|YP_800212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281748|sp|Q04UG6|MURD_LEPBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122283318|sp|Q04Z09|MURD_LEPBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116121643|gb|ABJ79686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124183|gb|ABJ75454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 116/318 (36%), Gaps = 38/318 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TGT GKS+  S V  + ++                    +         L    +
Sbjct: 103 KIIGITGTDGKSTTTSLVAHLLKK--------------------DFSDLKEGGNLGIPFT 142

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + ++   +E SS+ L+      + L    F NL  DH++ H+T + YF AK+++ +
Sbjct: 143 SFCKEPISLAVLELSSYQLEDS--SPLDLNVSVFLNLAPDHLERHETMENYFRAKLKIAD 200

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              P  S  +        +E +  + +  C++LS G            AI ++    I  
Sbjct: 201 LQNPNHSLIV----SEKIREKILNSTSVQCKLLSFG------RATTSEAILDESSSEIRT 250

Query: 296 EGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +D   F LPG     N   A     AIG     +   +     +P RF+  G    
Sbjct: 251 SKFIYDISRFYLPGTHNRENLAAAILASEAIGGKPESIQAQIPFFMGLPHRFQIAGEKRG 310

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    +   +S+   +   + +    +I+    G  + +  +P+   +   +  + +
Sbjct: 311 ISFINDSKSTNLHSMLAGMSAWKNLDRTCLIL---GGRPKQEDPKPLYDFLMRGIGCVVL 367

Query: 415 VTDDNPRSEDPEKIRAEI 432
           + +   RS   + IR  I
Sbjct: 368 IGE--ARSVWEKGIRNVI 383


>gi|117922177|ref|YP_871369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. ANA-3]
 gi|117614509|gb|ABK49963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           ANA-3]
          Length = 439

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 127/379 (33%), Gaps = 60/379 (15%)

Query: 30  INEVSSDSRHIQAG-----WIF--VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           I  +  DSR    G       F  V ++    D   ++ QA       I++S   ++   
Sbjct: 28  ITPLVMDSRRQPPGADTLASAFPEVQLIAGGFDCR-YLVQATQ-----IIISPGIAIDTP 81

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 +  I V+ +   F    A R        ++ +TG++GKS+V + V ++ + +G+
Sbjct: 82  EVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKSTVTTLVGEMLREAGM 136

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G     +                      L ++      +E SS  L+      +
Sbjct: 137 AVAVGGNIGIPA--------------------LDLLTENADIFVLELSSFQLE--TTHSL 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             +A +  N+  DH+D +    AY  AK+RL+ +        I   DDA +        N
Sbjct: 175 NCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQ----SRSIIFNRDDALTIPTEPMNQN 230

Query: 263 AGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 S G    +G    +      H   ++    E         L G     N L A 
Sbjct: 231 ------SFGLAPPEGDEWGICDSKIYHGHSEIMPITE-------VSLIGSHNHANLLAAM 277

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A+G++  ++ +       +  R E VG  +    +    A    +    L  +   
Sbjct: 278 ALVYAVGVEKQVMAKVARTFTGLSHRCEVVGVKAGVTYVNDSKATNVGATVAALDGLSDH 337

Query: 380 TSGRIIVVFGCGGDRDQGK 398
               I++  G G   D   
Sbjct: 338 LGDIILIAGGDGKGADFSP 356


>gi|74314710|ref|YP_313129.1| putative ligase [Shigella sonnei Ss046]
 gi|73858187|gb|AAZ90894.1| putative ligase [Shigella sonnei Ss046]
 gi|323166720|gb|EFZ52478.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella sonnei 53G]
          Length = 457

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 118/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+ SA     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVASADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|149371578|ref|ZP_01890994.1| UDP-N-acetylmuramate--L-alanine ligase [unidentified eubacterium
           SCB49]
 gi|149355205|gb|EDM43765.1| UDP-N-acetylmuramate--L-alanine ligase [unidentified eubacterium
           SCB49]
          Length = 457

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 125/380 (32%), Gaps = 59/380 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             LAV GT GK++ ++ +  +     +       T+ +   A++               S
Sbjct: 114 KCLAVAGTHGKTTTSAILGHLMIACDMP-----VTAFLGGIAENYN-------------S 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S+G     VEA         L          T++  DH+D +        +    F 
Sbjct: 156 NFISKGTEITVVEADEFDRSFLTLS---PDIACITSMDADHLDIYGNAAEIEKS-FNDFA 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L+           +  +  + +       + +++  +  F   + V   +      +  
Sbjct: 212 NLV-----------EDKNNLLYRSGLPLEGQTVAIEEKAAF-EAQNVRVENGGYVFDLQT 259

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D  F +PG   ++NA+ A G+ I  G  + ++ E L     V  RF +    ++
Sbjct: 260 PSVTLKDLRFYVPGHHNLHNAITAVGMAILAGASTDVLPEALASFKGVERRFSY-KIRTK 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    L  + + +  +    + ++VF                 +L   D  
Sbjct: 319 DIVLIDDYAHHPTELNALHQAVSEMYPEDKKVIVFQPHLFSRTKDFVTDFAQSLMQFDQV 378

Query: 414 IVTDDNPRSEDPEK----------IRAEIIHGIP--GFIEKGNRIEAIRT-AIE---MLN 457
            + D  P  E P +          I AE    +P    + K +  E ++T A     ++ 
Sbjct: 379 YLLDIYPARETPIEGVNSNWLLRLINAERSSELPPAKLVSKAHISEVLKTSACRIKLLVG 438

Query: 458 KQDVLVVAGKGHETVHIVTN 477
             D+      G E   +  N
Sbjct: 439 AGDI------GAEVEQVAKN 452


>gi|83748764|ref|ZP_00945779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia
           solanacearum UW551]
 gi|207744403|ref|YP_002260795.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724585|gb|EAP71748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia
           solanacearum UW551]
 gi|206595808|emb|CAQ62735.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum IPO1609]
          Length = 550

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 147/440 (33%), Gaps = 61/440 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN------TPILVVDNTRKFLSLFASRL 109
           G  F P  +  G   + +S   S  D +     +       P+        F    A   
Sbjct: 106 GGPFAPSLLE-GVTLVAISPGLSPLDAAVAALLDGARERTVPVW--GEIELFARALAGLK 162

Query: 110 YGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
             + +   +LA+TGT+GK++  +    + +R+G +   +G    IS  A D         
Sbjct: 163 SAQGYAPRVLAITGTNGKTTTTALTGALARRAGKT---VGVAGNISPSALDKLTECVDAG 219

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                +E SS  L+      +   A +  N+ +DH+D+H +  AY  
Sbjct: 220 TLP-----------DVWVLELSSFQLE--TTHTLAADAATILNITQDHLDWHGSMAAYAA 266

Query: 229 AKMRLFEE-----LLPKESPAIIYA-----------DDAYSKEVMKRA-----HNAGCRV 267
           AK R+F       L  +++  +++A           D+  + E +        H     +
Sbjct: 267 AKGRIFGAGTVRVLNRQDAEVMMFASKGGGDVTFGIDEPATPEALGLLRDGGMHGGMPWI 326

Query: 268 LSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +              +K         V + ++         + G     NA+ A  LC A
Sbjct: 327 VLAEADNDDLPKPARRKKGDTTPAAPVPVRLKRLMPADALRIRGLHNATNAMAALALCRA 386

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IG+ ++ +L  L      P R E +                  +    L  +        
Sbjct: 387 IGLPASALLHGLRDYAGEPHRVELIAAFDDIEFFDDSKGTNVGATVAALSGLSKH----- 441

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           +V+   G  + Q   P+   +A     + ++  D P      +IRA +       +E   
Sbjct: 442 VVLIAGGEGKGQDFSPLATPVAQYARAVVLIGRDAP------QIRAALADSGVELVEAPT 495

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
              A++ A+      D +++
Sbjct: 496 LEAAVQEAVARAQPGDAVLL 515


>gi|227824226|ref|ZP_03989058.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904725|gb|EEH90643.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 429

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 137/396 (34%), Gaps = 58/396 (14%)

Query: 112 KHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-------------- 154
            HPE  +    +TGT+GK SVAS++  I   SG  +        +               
Sbjct: 33  DHPERKIRTIHITGTNGKGSVASYLSHILTASGKKTACYTSPHFVKYNERMSIDGVDISD 92

Query: 155 --------------SFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHR 198
                              N    P+   +  A++  Y + + V +  +E    GL    
Sbjct: 93  EDFAAVTEETKAAVDTFLKNGGEQPTQFEVITAMAFLYFAKEKVDYAVIEVGMGGLWDS- 151

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            + I       TN+  +H D    T +A    K  + ++ +P  +     AD +  + + 
Sbjct: 152 TNVIVPELSVITNVTLEHTDRLGKTIEAIAEQKAGIIKDHVPVVTA----ADGSALEVIR 207

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             +      +   G   +      +     +Q         + +    L G  Q+ NA V
Sbjct: 208 VTSEEKSAPLYVYG---EDFSATLLAGSMQEQLFLYPFHSGEREVTIHLAGAHQIVNAAV 264

Query: 318 AAGLCIAIGI-DSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           A      +   D A+  + + K   L   PGR E +        + +D AH  + + ++ 
Sbjct: 265 ALKAAEVLAKKDPAITEKKILKGMDLTTWPGRMELIHERPD---VILDGAHNPSGVTVLR 321

Query: 374 KNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDN-PRSEDPEKIRA 430
           + + T    G    +FG  GD+D      + +I     D    V  DN  R+E P+ +  
Sbjct: 322 RALDTYYPHGHRYFIFGMMGDKDVS---EVAQILFRDTDTIYTVLADNGTRAEKPDVLAR 378

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +       I   +   A  TA+      DV++V G
Sbjct: 379 RLHK---KAIPMDDLKTAFETAVHEAGPDDVVLVCG 411


>gi|88858800|ref|ZP_01133441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
 gi|88819026|gb|EAR28840.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
          Length = 442

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 142/397 (35%), Gaps = 59/397 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S   +L            + V+ +         +R+  K    ++AVTG++GKS+V 
Sbjct: 75  IIISPGIALSTHEVQQAIAANVEVIGDI-----ELFARINDKP---VVAVTGSNGKSTVV 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +   ++   +G   + +G    I     D                 L +  +    +E S
Sbjct: 127 TLAARVLADAG---YNVGLAGNIGISPLD-----------------LFASEIDVFVLELS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +  I+ +  NL  DH+D +     Y+ AK     + + + +   +Y   
Sbjct: 167 SFQLE--TTTSLAPISATILNLCEDHMDRYAGMDEYYAAK-----QTIYRNAQWAVYN-- 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG-- 308
               +++   H A    LS G  G   HL+     H++     + + +    +  L    
Sbjct: 218 --QADLLTYPHEAKA-TLSFGESGSDYHLE-----HDESGSFFAYQQQTILPVSDLTIVG 269

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +    NAL    L     IDS +     +    +  R +FV      G  + + +  +N 
Sbjct: 270 KHNQLNALAVMALLKPFNIDSFVYSTSFKAFTGLAHRCQFVA--QIDGVNFYNDSKATNV 327

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              I       +  + +++   G  +     P+    A  + ++  +  D        K 
Sbjct: 328 GACISSIEGLYSPNKRLILIVGGDGKGADFSPLQYYFAAQVTELICLGRD-------GKA 380

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A +  G   F+   +  +A+  A ++    D +++A
Sbjct: 381 LAALKAG-SHFV--SSMAQAVACAKKLAASGDNVLLA 414


>gi|257483449|ref|ZP_05637490.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011575|gb|EGH91631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 448

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 120/352 (34%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 DGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSALRAPVAEHCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +   +       A+  +  +  + D +++
Sbjct: 376 VLL------GRDAELIAQALGDAVT-LVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|75908035|ref|YP_322331.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413]
 gi|8134380|sp|O86109|CPHA_ANAVT RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|3393028|emb|CAA06440.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413]
 gi|75701760|gb|ABA21436.1| Cyanophycin synthetase [Anabaena variabilis ATCC 29413]
          Length = 901

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 127/361 (35%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRSGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +           ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNPDSELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMIANALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIV-TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV  DD+ R        A I  GI        +    +  +AI   ++M     ++V+
Sbjct: 794 YIIVKEDDDTRGRPRGSASALITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVI 853

Query: 465 A 465
            
Sbjct: 854 L 854


>gi|154245789|ref|YP_001416747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159874|gb|ABS67090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthobacter
           autotrophicus Py2]
          Length = 537

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 113/315 (35%), Gaps = 42/315 (13%)

Query: 68  AEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             A+V+S    L      +S  +  +    V+ +   F     +          +A+TGT
Sbjct: 79  VAALVLSPGVPLTHPEPHWSVKLARDAGAEVIGDIELFCRERHAIARRSP---FIAITGT 135

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +  I + +G      G   T                     LS    +   
Sbjct: 136 NGKSTTTALITHILRVAGRDVQMGGNIGT-------------------AILSLAPPKPGR 176

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              VE SS+ +D      +    G   N+  DH+D H T + Y   K RL    +     
Sbjct: 177 VHVVECSSYQVDLA--PSLDPSVGVMLNITPDHLDRHGTIEHYAAVKERLVAG-VEGGGT 233

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD +S  +  RA  AG  V+ +  +           I    +  +  EG    F 
Sbjct: 234 AVVGVDDDFSAAMADRAVEAGKHVVRISVKRALPD-----GIWLDGETLVVSEGGAERFR 288

Query: 304 FPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            PL       G     NA  A   C  +G+   ++   +++   +  R E VG  ++G  
Sbjct: 289 LPLAGIGSLRGTHNAQNAAAAFAACRGVGVAPEIITIAMKRFPGLAHRMEEVG--NKGAV 346

Query: 358 IYVDYAHTSNSLEMI 372
           ++V+ +  +N+    
Sbjct: 347 LFVNDSKATNADAAE 361


>gi|17231371|ref|NP_487919.1| cyanophycin synthetase [Nostoc sp. PCC 7120]
 gi|20137726|sp|P58572|CPHA_ANASP RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|17133013|dbj|BAB75578.1| cyanophycin synthetase [Nostoc sp. PCC 7120]
          Length = 901

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRSGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +       +   ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMIANALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV +D+     PR    E I   I    P   +    +  +AI   ++M     ++V+
Sbjct: 794 YIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVI 853

Query: 465 A 465
            
Sbjct: 854 L 854


>gi|223937423|ref|ZP_03629328.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
 gi|223893974|gb|EEF60430.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
          Length = 477

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 118/352 (33%), Gaps = 40/352 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT+GK + A  V+ I   +         TS     A+      P            
Sbjct: 111 IAIAGTNGKGTTAELVESILTHNNRK------TSLCGHGARPVCSVVPETKE-------- 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +  + ++A+S  L+       +       NL  DH+D + T   Y  A  RLF+  
Sbjct: 157 ----MDFLVLQANSFQLE--TTQFFRPAVAVLMNLAHDHLDRYATHADYVRANARLFQN- 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +++            ++         ++++     +     +     ++  +   + G
Sbjct: 210 --QQAFDWAIVQSEALAQLRLLDVPIPSKIITFSANNR-----RADIFLDRGLLISRLPG 262

Query: 298 KDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          L G     N + A  +   + I    ++  L+       RFEFV   +
Sbjct: 263 WEGPLWNMDECLLRGSHNAENVMAALAVGHVLRIPLEEIVNALKTKAPGAHRFEFVAEVN 322

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADI 412
               I    A   ++L+  L ++    +G   + +   G D+      +   ++  +   
Sbjct: 323 GVKYINDSKATNVDALQKALLSVPPAPAGEPNIWLIAGGKDKSLDYHDVGPLMSQRVKGA 382

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++       E  EKIRA             + +EA+  A +     DV+++
Sbjct: 383 FLI------GEAREKIRAA-WSLFTPCTTVSSLLEAVGAAGKSAVPGDVILL 427


>gi|330938043|gb|EGH41811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 106

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEM 455
           RP+M ++   LAD   VTDDNPRSE P  I  +I  G     +      R +AI   I  
Sbjct: 2   RPLMAEVVERLADGVWVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIAS 61

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            N  DV+V+AGKGHE    + NG+++   D       L +
Sbjct: 62  ANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEAASALAV 100


>gi|332288554|ref|YP_004419406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gallibacterium anatis UMN179]
 gi|330431450|gb|AEC16509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gallibacterium anatis UMN179]
          Length = 440

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 138/397 (34%), Gaps = 59/397 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   SL+       S   + +V +   F          +    I+A+TG++GKS+V 
Sbjct: 72  IVLSPGISLKTPEIRKASEKCVEIVGDIELF--------CREADAPIVAITGSNGKSTVT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +      +G    I                   ALS L   G     +E S
Sbjct: 124 TLVYEMAKAA---DLNVGIGGNIG----------------IPALSLLGK-GCQLYVLELS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +   A +  N+  DH++ +   + Y  AK+R++          ++  +D
Sbjct: 164 SFQLE--TTYSLNAAAATILNISEDHMNRYDDMEEYRQAKLRIYRH----AETIVVNNED 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKDFDFLFPLP 307
              +           R+LS   +    +L+++          ++ + VE         L 
Sbjct: 218 ---RATYPDYREPQHRLLSFAEKHADYYLQEMWGHTYLATDSRLLLDVE------KMKLI 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+ I    +++ L+    +  RF+ V   +    +    A    
Sbjct: 269 GRHNYMNALAAIALAQAVKIPQQGIIDALQSFAGLDHRFQTVHYENGVRWVNDSKATNVG 328

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++   +G + ++ G  G +             ++       D  P       
Sbjct: 329 STEAALNGLQ--VAGNLYLLLGGDGKKADFSDLKPLINKSNIFCYCFGQDKLP------- 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AE+       +      +AI      L   D++++
Sbjct: 380 -LAELSS---QSVVVDTMEQAIEQIRPKLKAGDMVLL 412


>gi|251781817|ref|YP_002996119.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390446|dbj|BAH80905.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 443

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 108/348 (31%), Gaps = 46/348 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++V +A+   + +    +    L      +FL  F  +           V G  GK+S  
Sbjct: 65  LIVGNAFREDNNNEVAYAIQHELPFKRYHEFLGDFMKQFI------SFGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +S+ IG  +   S      +                         E  
Sbjct: 119 GLLSHVLKNITDTSYLIGDGTGRGSANAQYFVFESD---------------------EYE 157

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H +  H            TN+  DH DY        +A     +++   +    +Y +D
Sbjct: 158 RHFMPYH------PEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQV---KKALFVYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              K++   A      +   G++ G       +    +    T+  +G+    F  P  G
Sbjct: 209 QELKKITANAP-----IYYYGFEEGNDFVASDIARTTHGSDFTVKHDGQIIGRFHVPAYG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA          GID  LV EHL+    V  RF     N     I  D+AH    
Sbjct: 264 RHNILNATAVIANLFVAGIDMELVAEHLKTFSGVKRRFTEKLINE--TIIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   +   R    +  I+ +F                +AL+ AD   +
Sbjct: 322 IVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFALALNEADSVYL 369


>gi|226329708|ref|ZP_03805226.1| hypothetical protein PROPEN_03620 [Proteus penneri ATCC 35198]
 gi|225202894|gb|EEG85248.1| hypothetical protein PROPEN_03620 [Proteus penneri ATCC 35198]
          Length = 459

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 119/370 (32%), Gaps = 39/370 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  + +  G     +     +    Q +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWVLEDCGYKPGFL--IGGVPGNFQVSAQLGESPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+           S                   NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYS------------PRTLILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P     I+  +D   K+ +             G  G +   K     ++     
Sbjct: 207 LV-RIVPGSGKIIMPDNDMNLKQTIGM--GCWSEQEFTGETGDWQAKK---ISNDSSHFA 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+   +  + L GE  + N L+A      +G+  A   E L K      R E  G 
Sbjct: 261 VFHKGEQVGEVCWGLSGEHNMQNGLMAIVAAHHVGVLPADACEALNKFINARRRLELRGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALD 408
            ++   +Y D+AH   ++   L+ +R+   G  RII V          G        AL 
Sbjct: 321 VNQ-VSVYDDFAHHPTAILATLEALRSKVGGTARIIAVLEPRSNTMKMGISKDDIAPALG 379

Query: 409 LADIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVA 465
            AD   +       + P  + + ++I            +    +    +     D +++ 
Sbjct: 380 RADEVFL------FQPPNIQWLVSDIAEHCVQPARWSTDLDTLVDMIAKEAQAGDHILIM 433

Query: 466 GKG-----HE 470
             G     HE
Sbjct: 434 SNGGFGGIHE 443


>gi|256421380|ref|YP_003122033.1| Mur ligase middle domain protein [Chitinophaga pinensis DSM 2588]
 gi|256036288|gb|ACU59832.1| Mur ligase middle domain protein [Chitinophaga pinensis DSM 2588]
          Length = 450

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 32/347 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++           R++ P L+       K  S           +N + V G+ GK++  
Sbjct: 60  ITADLDAVILGMHARADNPELIKAKELGLKIYSFPEYIYQESQQKNRVVVGGSHGKTTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  + Q+SG +   +     + +       +             +  +G  +     +
Sbjct: 120 AMIMHVLQQSGQAFDYL-----VGARLAGFPQSVNITDAPV-----IVCEGDEYP----A 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S    + +   +       T +  DHI+   T + Y   +  +F   +      I    D
Sbjct: 166 SVIEKRPKFHFLHPHIAVLTGIAWDHINVFPTFENYLE-QFAIFLRTMKAGHTLIYNNTD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +++K A     +++        I+          QQ  + V G           + 
Sbjct: 225 PELVKLVK-AEGLHLKLVPYDIPQHQINNGVTTVHFGDQQTELEVFG-----------DH 272

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N   A  +C  +GI   + L+ +        R E VG N     IY D+AH  + ++
Sbjct: 273 NLLNMHAARLVCNELGISDEVFLKAIATFKGAAKRLELVGKNEHCA-IYRDFAHAPSKVK 331

Query: 371 MILKNIR-TITSGRIIVVFGCGGDRDQGKRPI-MGKIALDLADIAIV 415
             +  +R      ++I V             +   +  +D ADI +V
Sbjct: 332 ATISALRDQYPQRKLIGVLELHTYSSLNADFMVQYQGCMDKADIPVV 378


>gi|213420152|ref|ZP_03353218.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 336

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 96/278 (34%), Gaps = 22/278 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 49  RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 106

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 107 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 154

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 155 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDTSEWEVWLD 210

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 211 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 268

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGC 390
           G  +Y D+AH   ++   L  +R    G  RII V   
Sbjct: 269 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP 306


>gi|319791795|ref|YP_004153435.1| UDP-N-acetylmuramoyL-tripeptide--D-alanyL-D-alanine ligase
            [Variovorax paradoxus EPS]
 gi|315594258|gb|ADU35324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
            [Variovorax paradoxus EPS]
          Length = 1592

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 153/461 (33%), Gaps = 62/461 (13%)

Query: 39   HIQAG-WIFVA-----IVG-NKE-------DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             ++ G  +FVA     +             D H  +P+   Q A AIV       Q    
Sbjct: 1144 KVRPGPALFVASDYRTLAAHENFSHAPEDWDQHDDLPRLHTQCAGAIV-------QHAVE 1196

Query: 85   TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +  + P+L V +  + L    +    ++   ++ VTGT GKSS  + V+ +        
Sbjct: 1197 GLPPDFPLLQVPDPIRALLSLGAAARARYKGLVVGVTGTVGKSSTIAMVRDLLP------ 1250

Query: 145  FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--- 201
                      +          S + +  A++ L    V    +E +   L   R      
Sbjct: 1251 --------PGARVLTTVENNNSRVGVPGAMASLGPD-VDVCILEMAQSALWMDRGPISLE 1301

Query: 202  IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             +      T +G        T +     K R F  L P    A++     +  +V+K A 
Sbjct: 1302 ARPHVAILTEVGLSQTAKTNTLEKTAEYKSRAFLGLEP-GGIAVVSGHIPHLAKVVKAAM 1360

Query: 262  NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                +V +VG   G  I L       +  +V +S +G+  ++LFP+     V N+ +A  
Sbjct: 1361 RTAAKVWTVGTGPGDNIRLLDARPESSGCRVRLSFKGRIHEYLFPVASIGLVRNSALAFA 1420

Query: 321  LCIAIGIDSALVLEHLEK--LHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376
              +A+G D+      +    L     + E + T S      VD +  +   S+   +  +
Sbjct: 1421 AIVAMGFDAEEASARMPNVRLPASVMQVEPLRTRSGALVTLVDDSWNAEVMSMRNAMSFV 1480

Query: 377  RTI--TSGRIIV---------VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            R+    SG   V         +   G   +   R +   +        +   D  R    
Sbjct: 1481 RSYRAPSGNAPVARKVGVLGRIVNLGEQAEAMHRGLAEPLLASGIAHLVTHGDEMRWLRE 1540

Query: 426  EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E   + +        E            E L   D+L+V G
Sbjct: 1541 EVPTSLLGPHFDNAAELT------LYLGEYLRDGDLLLVKG 1575


>gi|283769653|ref|ZP_06342549.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bulleidia
           extructa W1219]
 gi|283103921|gb|EFC05307.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bulleidia
           extructa W1219]
          Length = 430

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/390 (15%), Positives = 129/390 (33%), Gaps = 51/390 (13%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               L DF   +++   +L  +   + +S  +      +   ++ +TGT GKS+ +S V 
Sbjct: 63  EEVCLHDFDYILKAPGIVLKAEQELETISSQSELFIKMYRNQVIGITGTKGKSTTSSLVY 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + ++      ++     I     +                    +G      E S H +
Sbjct: 123 SLLKQ----EKKVVLVGNIGKPCFEEI--------------EAMEEGALA-VFELSCHQM 163

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +  R+           NL  +H+D++ + + Y  AK  ++            Y  D    
Sbjct: 164 EYTRVS---PYIAVLLNLYEEHLDHYGSFEKYGLAKSHIYS-----------YQQDNDLA 209

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            V     +   +  +        +L+K   +  K     +  G+       L G     N
Sbjct: 210 IVPMNLPSFLPKPET------AWYLEKEVFV--KDGYFFNPLGQLIIPKTKLIGYHNEQN 261

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
             +A  + + +GI    + + LE    +  R E+VG   +G     D   T    +  ++
Sbjct: 262 MAIAVAIAMKLGISEKGIQKGLETFEPLEHRLEYVGI-YQGIHYVNDSISTIG--QSCIQ 318

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            + ++    +  V   G DR  G + +   I        I      R      I +E+  
Sbjct: 319 AMESLP--LVQTVLIGGMDRGIGYQELEDYIQKHPNHHYIFMYATGRR-----ILSELGK 371

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               F       EA+  A  +  +  ++++
Sbjct: 372 REKNFYFVETLKEAVCLAKRITERGKMVLL 401


>gi|261823018|ref|YP_003261124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium wasabiae WPP163]
 gi|261607031|gb|ACX89517.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           wasabiae WPP163]
          Length = 438

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 137/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALATPILCDAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLPA--------------------LQLLEQPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH + +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEH----ADLCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  +      A  R  S G      HL +      + +  + V G+        
Sbjct: 212 NADDALTMPI----RGADVRCRSFGVDVGDYHLNR-----QQGETWLRVNGERVLNTREI 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+ I  A  L  L     +P RF+          I    A 
Sbjct: 263 KLVGQHNYTNALAALALADAVKIPLASALTALTAFTGLPHRFQMAFERDGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P++     +   +     D      
Sbjct: 323 NVGSTEAALSGLT--VDGTLHLLL-GGDGKSADFSPLVPYFQGERIRLYCFGRDAA---Q 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     +A+R   E +   D++++
Sbjct: 377 LAALRPEIAE------QTETMEQAMRVIAERIKPGDMVLL 410


>gi|157147793|ref|YP_001455112.1| hypothetical protein CKO_03597 [Citrobacter koseri ATCC BAA-895]
 gi|157084998|gb|ABV14676.1| hypothetical protein CKO_03597 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 113/363 (31%), Gaps = 38/363 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +       +F                  
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEACGYQPGFV-IGGVPGNFDVS--------------- 134

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 135 ARLGESHFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I    D   K+ +  A         VG QG     KK+ A  +  +V 
Sbjct: 195 LV-RIVPGQGRIIFPEHDINLKQTI--AMGCWSEQELVGEQG-HWQAKKLNADASVWEVW 250

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  + N L+A      +G+  A     L        R E  G  
Sbjct: 251 LDGE-KAGEVKWSLVGEHNMNNGLMAIAAARHVGVMPADAANALGSFINARRRLELRG-E 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDL 409
           + G  +Y D+AH   ++   L  +R+   G   I+                  +A  L  
Sbjct: 309 ANGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGLCKDDLAPSLGR 368

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVA 465
           AD   +         P+ I    AE+             ++A+    ++     D ++V 
Sbjct: 369 ADEVFLLQ-------PQHIPWQVAEVADACVQPAHWSGDVDALADMVVKTAQPGDHILVM 421

Query: 466 GKG 468
             G
Sbjct: 422 SNG 424


>gi|323945968|gb|EGB42006.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H120]
          Length = 457

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLLLNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|238752430|ref|ZP_04613907.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
           ATCC 43380]
 gi|238709363|gb|EEQ01604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
           ATCC 43380]
          Length = 442

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  +   + +V +   F          ++   ++A+TG++GKS
Sbjct: 70  ADLIVASPGIALAHPALSAATEAGVEIVGDIELF--------CRENQAPLVAITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                        ALS L  +    V +
Sbjct: 122 TVTTLVGEMAKAAGWQVGVGGNIGV-------------------PALSLLQQEN-QLVVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 162 ELSSFQLE--TTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYEN----AKVCVV 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  +      A  R +S G      HL K      + ++ + V G+        
Sbjct: 216 NADDALTMPI----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 266

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  +  L  L     +P RF+ V  ++    I    A 
Sbjct: 267 KLTGRHNYTNALAALALADAVGIPRSSSLTALTTFTGLPHRFQLVFEHNGVRWINDSKAT 326

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +      +   +  D   I     D    E 
Sbjct: 327 NVGSTEAALDGLQ--VDGTLHLLL-GGDGKSADFSGLTRFLQGDHIKIYCFGRD---GEQ 380

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + +  +D++++
Sbjct: 381 LAQLRPEVSQ------LTETMEQAMVLLAKTVIPRDMVLL 414


>gi|289805212|ref|ZP_06535841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 391

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +    + +     SP ++ +A 
Sbjct: 37  RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFEVSARLGESPFFVIEAD 94

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 95  EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 142

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 143 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDTSEWEVWLD 198

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 199 GE-KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EAN 256

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 257 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 316

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 317 EVFLLQP-PHI--PWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 370


>gi|261349377|ref|ZP_05974794.1| UDP-N-acetylmuramyl tripeptide synthase [Methanobrevibacter smithii
           DSM 2374]
 gi|288861741|gb|EFC94039.1| UDP-N-acetylmuramyl tripeptide synthase [Methanobrevibacter smithii
           DSM 2374]
          Length = 478

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 152/423 (35%), Gaps = 46/423 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127
           A +++       +      N P++VVD      +        K       + +TGT+GKS
Sbjct: 61  ACLITQTPQDGAWDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA------LSYLSSQG 181
           + +  +  I + +G+       T+T S    +  +       ++        L YL    
Sbjct: 121 TTSHLIYHILKNTGVHV----LTNTDSESEFNTLIDPMVSKLISDEVKNNGKLDYLV--- 173

Query: 182 VTHVSVEASSHGLDQHRL----DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +    V+     L +H        +K   G  TN+  DHI    +    F+   ++   +
Sbjct: 174 IEVSEVQGWLGNLMKHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNAI 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +   ++  DD    ++  + H   C + ++  +   ++         K+ +      
Sbjct: 234 --GDGVTVLNYDDDLVMKLTPK-HPFLCSMNNMDSKNPNVYYDNGIFYEGKRILE----- 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +   P      + N L A   CI++ +D   ++E ++    +  RF  +  N     
Sbjct: 286 ---NKDLPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLHEN---PL 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPI-MGKIALDLAD--I 412
           I  D+AH  + ++  +   R +   +  + VV    G R      + +  +A  + D   
Sbjct: 340 IVDDFAHNPDGIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALAESMDDNTK 399

Query: 413 AIVTDDNP------RSEDPE-KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +++  N         ED E +I  E++      +    N  + ++   +  +  D++++
Sbjct: 400 LVLSSSNDVVDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILL 459

Query: 465 AGK 467
            G 
Sbjct: 460 IGA 462


>gi|170695338|ref|ZP_02886484.1| UDP-N-acetylmuramate [Burkholderia graminis C4D1M]
 gi|170139738|gb|EDT07920.1| UDP-N-acetylmuramate [Burkholderia graminis C4D1M]
          Length = 464

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 118/360 (32%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++  S +  + + +GL+   +     I     +  ++           + 
Sbjct: 106 VLAVAGTHGKTTTTSMLTWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 150 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAI-ETQFHHL 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P+    +    +   + V+ R       V   G QG +  L     +   ++  + 
Sbjct: 209 IRTVPRIGRVVTNGREDALERVLTR--GCWSEVERFGVQGGWETLPAEDGVPVDERFAVY 266

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +    + + + GE    NAL A      +G+  A   + L     V  R E  G + 
Sbjct: 267 HNAERVGVVEWQVQGEHNRMNALAAIAAARHVGVPPAQAAKSLASFRNVKRRMEVRG-SV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 326 DGVTVYDDFAHHPTAIETTVAGLRARVGRDNTRILAVLEPRSNTMKLGVMKAQLPASLAD 385

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
              +     P   D       E +  +    +  + ++A ++  +      D ++V   G
Sbjct: 386 ADLVFGYGAPSGRDALGWNLGEALAPLGANAQAFDNLDALVKAVVHAARPGDQILVMSNG 445


>gi|16330305|ref|NP_441033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechocystis
           sp. PCC 6803]
 gi|3122410|sp|P73668|MURD_SYNY3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|1652794|dbj|BAA17713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechocystis sp.
           PCC 6803]
          Length = 452

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 135/395 (34%), Gaps = 45/395 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           V  +       S  +  + P+LV    +  +            H    + +TGT+GK++ 
Sbjct: 61  VKEAWPERIVVSPGVPWDIPLLVAAREKGVEVTGELELAWQYLHAVPWVGITGTNGKTTT 120

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S VQ I Q++GL++   G                        A   L  Q   +  + A
Sbjct: 121 TSLVQAIFQKAGLNAPACGNIG--------------------YAACELVLQNQNYDWIVA 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       +    G +T    DH+  H+T + YFN K  L    L + +  ++  D
Sbjct: 161 EISSYQIESSPTLAPQIGLWTTFTPDHLSRHKTLENYFNIKASL----LSRSAIQVLNGD 216

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFD--FLF 304
           D +        +       + G      HL  +C        Q   ++  G+      LF
Sbjct: 217 DPHLHSHGPNLYPQAHWTSTQG----ANHLAGLCDPKQGVYLQDNWVNAFGELIAPINLF 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+    N L+A       GID   + E L     VP R E + T +    I    A 
Sbjct: 273 KMPGQHNQQNLLMAIAAARLAGIDKKAITETLLTFTGVPHRLEPICTINGVQFINDSKAT 332

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++ E+ L ++     G  I++   G  ++   +  + +I      + ++ D  P    
Sbjct: 333 NYDAAEVGLSSM----KGPTILI-AGGEAKEGDDQAWLAQIRQKAVAVLLIGDAAPNFAT 387

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             K       G   +        A++  +E+ +K 
Sbjct: 388 RLK-----AVGYENYEIVETMANAVQRGLELASKN 417


>gi|289443664|ref|ZP_06433408.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
 gi|289416583|gb|EFD13823.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 219

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 58  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 114

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 115 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  IG     +      + LTTP    L   L+ +  +GV  V +
Sbjct: 175 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVM 219


>gi|302339378|ref|YP_003804584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636563|gb|ADK81990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 459

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 144/429 (33%), Gaps = 57/429 (13%)

Query: 64  IAQGAEAIVVS-SAYSLQDFSATIRSNTPI----------------LVVDNT-------- 98
           I +GAE  V       +   S    ++ P+                +VV N         
Sbjct: 31  IEEGAEVTVTDLRDEKILGPSIRKLASFPVRFVLGRHEMSDFSKADIVVKNPAVPASSPY 90

Query: 99  RKFLSLFASR---LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            K  +   S        +   I+AVTG+ GKS+V S +    Q       ++G   T+S 
Sbjct: 91  LKAAARVESDISIFLRHNNRPIIAVTGSKGKSTVVSAMFHAIQ-LRYPEARLGGNITVSP 149

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
               +     S   +   LS              S    D      +K      TN+  D
Sbjct: 150 LTFIDECRAESAAPVILELS--------------SWQLADLRGKRLLKPAVSLITNIMHD 195

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H + + + +AY   K  ++ +   KE+  +I  DD +S E                 +G 
Sbjct: 196 HQNSYDSMEAYVADKKIIYADQT-KEAYTVINGDDPWSAEFASETPAKSIPF--FRDEGS 252

Query: 276 FIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              +    A          S E +       + GE    N L AA +    G   + V +
Sbjct: 253 ARGISAWLAEDGSGWYRDASGEEEILPAHIAICGEHNRLNLLSAALVLKLFGTAGSDVKQ 312

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L     +P R E + T  R  R Y D A T    E     +++ ++   +++   G D+
Sbjct: 313 RLADFRGIPHRLELL-TEKRQVRWYNDSASTIP--EATAVAVKSFSAP--LILITGGTDK 367

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           +    P+    A+      ++  +   S+    I       +P      +  EA++ A +
Sbjct: 368 NIDFSPLESYAAVP---KKMILLEGSASDKMADILES--RNLPFSGPFASLKEAVQCAEK 422

Query: 455 MLNKQDVLV 463
             +  D+++
Sbjct: 423 EASPGDIVL 431


>gi|28493193|ref|NP_787354.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Tropheryma
           whipplei str. Twist]
 gi|28476234|gb|AAO44323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei str. Twist]
          Length = 528

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/430 (14%), Positives = 141/430 (32%), Gaps = 65/430 (15%)

Query: 62  QAIAQGAEAI------VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYG 111
            AI  GA  +      +          S  I  + P++     R+   L     A R+  
Sbjct: 106 DAI--GARYVCAYLDELCEVDVDFIVVSPGISPDNPVIKRLRDRQIPILSEIELAWRVRD 163

Query: 112 K-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           K +    + +TGT+GK++ A     +  + G      G   T                  
Sbjct: 164 KVNTCPWILITGTNGKTTTALLTGSMLAKDGARVAVCGNIGT------------------ 205

Query: 171 AKALSYLSSQGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
               +  + +G  ++ VE SS  L     H    +K  + +  NL  DH+++H  ++ Y+
Sbjct: 206 PVLDAVRNPKGFDYLVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYY 265

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIH-------- 278
            AK R++          +   DD  +K+++++A      R +  G     +         
Sbjct: 266 CAKSRVYHG---TTGFCVYNLDDEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGI 322

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L     +  ++   + +   +      L     + + L A  L  ++  +   +   L++
Sbjct: 323 LCDRAFLSARKDSALEITSVEKLEKNKLSMRHIISDVLCAVALARSVETNPLSISRALDE 382

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             + P R E V        +    A   +++   L N         +++   G  +    
Sbjct: 383 FCLSPHRTEVVAKEMGVMWVNDSKATNPHAVIASLSNF------SRVILIFGGLMKGVDV 436

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIE 454
             I  +    +  + ++  +         I+          +   +      EA+  A  
Sbjct: 437 SGIFDRFYETIKAVVVIGKNQSF---VGNIK------CKKIVCIPDSNDPMSEAVAAADL 487

Query: 455 MLNKQDVLVV 464
           +    D +++
Sbjct: 488 LATPGDTVLL 497


>gi|254827076|ref|ZP_05231763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL N3-165]
 gi|258599459|gb|EEW12784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL N3-165]
          Length = 455

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 103/284 (36%), Gaps = 26/284 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-TDD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+      +V+      +      V        +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTK---AQVIPFSTTQRLNQGSYV----QNGNIMFNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI   +   + +E A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|331268360|ref|YP_004394852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
 gi|329124910|gb|AEB74855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
          Length = 458

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 120/360 (33%), Gaps = 47/360 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V  + +  G  ++  G                    
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYNMLKSEGYKTWVGGNIGNP--------------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  ++      V +E SS  L   + D         TNL  +H+D H+  + Y +
Sbjct: 156 -LFANIEEMTK--ADKVVLELSSFQLMTIKEDM---NCALVTNLSPNHLDIHKDMEEYVD 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+    +    ++  D+  + +++  A     +  S+  +       K   +   
Sbjct: 210 AKKNIFKYQ-NENDLLVLNKDNKITNDLVNEAKGK-VKQFSIKEEIHNGAYFKNDKLFIL 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +   ++E         L G   V N L A    +   +    + +       V  R EF
Sbjct: 268 DKEVCALE------EIKLKGMHNVENLLAAF-CLVNEDVSINNMRKVAISFTGVEHRCEF 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V     G + Y D   +S +     + I  + +    V+   GG         + +   D
Sbjct: 321 V-RELDGVKYYNDSIASSPT-----RTIAGLRAFEKPVILIAGGYDKHIPFEPLAEEGYD 374

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNR-IEAIRTAIEMLNKQDVL 462
                I+T         EKI+    + I        I    R  EAI  A E+    D++
Sbjct: 375 KIKALILT-----GVTKEKIKKAFDNVIENKPYKIPIYMVERFEEAIYKAKEISKAGDIV 429


>gi|296160493|ref|ZP_06843309.1| UDP-N-acetylmuramate [Burkholderia sp. Ch1-1]
 gi|295889242|gb|EFG69044.1| UDP-N-acetylmuramate [Burkholderia sp. Ch1-1]
          Length = 464

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 119/360 (33%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 150 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAI-ETQFHHL 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +   + V+ R       V   G QG +  L     +   ++  + 
Sbjct: 209 IRTVPGIGRIVTNGREDALERVLTR--GCWSEVERFGVQGGWETLPAEDGVPVDERFAVY 266

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +    + + + GE    NAL A      +G+  A   + L     V  R E  G + 
Sbjct: 267 HNSERVGVVEWQVQGEHNRMNALAAIAAARHVGVPPAQAAQSLASFRNVKRRMEVRG-SV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   +++  L  +R         I+              +  ++   LAD
Sbjct: 326 DGVTVYDDFAHHPTAIDTTLAGLRARVGRDNTRILAVLEPRSNTMKLGVMKAQLPASLAD 385

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
              +     P   D       E +  + G  +  + ++A ++  +      D ++V   G
Sbjct: 386 ADLVFGYGAPTGRDALGWNLGEALAPLGGKAQAFDNLDALVKAVVHAARPGDQILVMSNG 445


>gi|170720128|ref|YP_001747816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida W619]
 gi|169758131|gb|ACA71447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           W619]
          Length = 448

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 121/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 85  ALQQAAARGVKLSGDIELFARHAKAPIVAISGSNAKSTVTTLVGEMAAKAGKHVAVGGNL 144

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T +                      L S  V    +E SS  L+    D +     +  
Sbjct: 145 GTPA--------------------LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVL 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +            S 
Sbjct: 183 NISEDHMDRYSGLPAYHLAKHRIFRG----ARQVVVNRQDALSRPLPVEGRPCW----SF 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 235 GLNQPDFKAFGLREVDGEKYLAFEFQALMPARELKIRGAHNQSNALAALALGHAAGLPFE 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V   S G   Y D   T+    +             +V+   
Sbjct: 295 PMLEALREFGGLAHRCQWVRARS-GVNWYDDSKATNVGAALAAIEGLGADIDGKLVLIAG 353

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G  +      +   +A     + ++  D  R        AE +      +      EA++
Sbjct: 354 GDGKGADFAALREPVARFCRAVVLLGRDADR-------LAEALGDAVPLVRVKTLDEAVQ 406

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 407 QCAELAVPGDAVLL 420


>gi|34811495|pdb|1P31|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) From Haemophilus Influenzae
 gi|34811496|pdb|1P31|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) From Haemophilus Influenzae
 gi|34811497|pdb|1P3D|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) In Complex With Uma And Anp.
 gi|34811498|pdb|1P3D|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) In Complex With Uma And Anp
          Length = 475

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 116/374 (31%), Gaps = 36/374 (9%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I  GA  +VVSSA    +          I V+   +  L+      +G    
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQX-LAEIXRFRHG---- 120

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  + +  I  ++ L    +      S+          +  YL   ++
Sbjct: 121 --IAVAGTHGKTTTTAXISXIYTQAKLDPTFVNGGLVKSAG---KNAHLGASRYL---IA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + +                ++      TN   DH D ++       A    F 
Sbjct: 173 EADESDASFL---------------HLQPXVSVVTNXEPDHXDTYEGDFEKXKATYVKFL 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             LP    A+  ADD    E++ +             Q  +                I  
Sbjct: 218 HNLPFYGLAVXCADDPVLXELVPKV-GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICP 276

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---N 352
             +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G     
Sbjct: 277 NNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRP 336

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLAD 411
           +   R+  DY H    + + +K  R     + IV +F                  L   D
Sbjct: 337 NGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVXIFQPHRYSRTRDLFDDFVQVLSQVD 396

Query: 412 IAIVTDDNPRSEDP 425
             I  D     E P
Sbjct: 397 ALIXLDVYAAGEAP 410


>gi|300864111|ref|ZP_07109007.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
 gi|300337877|emb|CBN54153.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
          Length = 906

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 124/364 (34%), Gaps = 36/364 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G +   +G T+T  ++  +  + +        A   LS   V    +E + 
Sbjct: 505 LLAHIVKQTGQT---VGYTTTDGTYIGEYLVESGDNTGPQSAHLILSDPTVEVAVLETAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +     A++ ADD
Sbjct: 562 GGILRSGLGFEHCDVGVVLNVAADHLGIGDIDTVEQLATLKSVVAESVMPNGCAVLNADD 621

Query: 251 AYSKEVMKRAHNAGCRVLS------VGYQGKFIHLKKVCAIHN----KQQVTISVEG-KD 299
               ++ +R                V        L  V         K   T+ +E   +
Sbjct: 622 PLVAKMAQRVKAQVAYFSMNPDSELVAKHTAAGGLAAVYEHGYLSILKGDWTLRIEQAVN 681

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRG 355
                     F + NAL A     A G+    +   L          PGR       +  
Sbjct: 682 VPLTMGGRAPFMIANALAACLAAFAQGVKIEHIRAALSTFQASAGQTPGRMNLFNLGTYH 741

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH ++S E +   +R      I VV G G  RD+    + GK++  + D  IV
Sbjct: 742 ALV--DYAHNAHSYEALGSFVRNWPGFHIGVVGGPGDRRDEDFITL-GKLSAKIFDRIIV 798

Query: 416 TDDNPRSEDPEKIRAEII-HGIP-------------GFIEKGNRIEAIRTAIEMLNKQDV 461
            +D  R   P    AE+I  GI               +    +   A+  A++      +
Sbjct: 799 KEDADRRGRPAGSAAELISQGIREALNSQENGKSKVEYESILDETTAVNKALDNAPPGSL 858

Query: 462 LVVA 465
           +V+ 
Sbjct: 859 VVIL 862


>gi|325510600|gb|ADZ22236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum EA 2018]
          Length = 462

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 125/364 (34%), Gaps = 53/364 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  I  VTG+ GK++  + +  + +  G  ++  G   T                
Sbjct: 112 FIKYCPAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVGGNIGTP--------------- 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +S++    V +E SS  L       +       TNL  +H+D H+  + Y N
Sbjct: 157 -LFSKIKEVSTK--DKVVLELSSFQLMTI---DVSPEVAVVTNLSPNHLDIHKNMEEYIN 210

Query: 229 AKMRLFEE-------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           AK  +F         ++ +++      +     +++K + N   +  +   +        
Sbjct: 211 AKKNIFTHQSKGNVLIINRDNEITNNMESEALGDLLKFSRNEKVKNGAYYNKQDGNIYLF 270

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              I NK  + I  +G D            V N + A    ++  +    +++       
Sbjct: 271 ENKICNKDDIKI--KGMD-----------NVENFMAAF-CAVSKDVSKESMIKVAMNFAG 316

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R EFV     G + Y D   +S +     + I  + +    V+   GG         
Sbjct: 317 VEHRREFV-RELDGVKYYNDSIASSPT-----RTISGLNAYERPVILIAGGYDKHIPFEP 370

Query: 402 MGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNR-IEAIRTAIEMLNK 458
           + +   D   + I+     N   E  +K+  E    I   I   +   EA+  A ++   
Sbjct: 371 LAEKGYDKIKVLILMGATKNKIKETFDKVICE--KNIKLPIILSDNLEEAVCEAKKVATN 428

Query: 459 QDVL 462
            D++
Sbjct: 429 GDIV 432


>gi|240850894|ref|YP_002972294.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Bartonella grahamii
           as4aup]
 gi|240268017|gb|ACS51605.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Bartonella grahamii
           as4aup]
          Length = 464

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 115/331 (34%), Gaps = 45/331 (13%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPENILAV 120
            A++V+    L      +         I ++ +     R          +       +A+
Sbjct: 67  VALIVAPGVPLNYPQPHWVVEKARKKNIEIIGDIELFVRARQHFLQHYGFCDQDVPFIAI 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+    +  + ++ G      G                         L+     
Sbjct: 127 TGTNGKSTTTVLLAHLLEKMGYDVQVGGNIG-------------------KAILTLKPFV 167

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +E SS  +D      ++   G   NL  DHID H +   Y   K      L+ +
Sbjct: 168 KKRIYVIECSSFQIDL--TPSLQPTIGLLLNLTPDHIDRHGSFACYVQTK----RHLIAQ 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISV 295
            S A I  DDA  + + ++  + G ++ ++        G +    K+ A++  Q+  ++ 
Sbjct: 222 ASQAFISVDDAACRFLYQQLLHEGKKIGAISKDHFVENGFYADGTKLFAVYQGQRHMLA- 280

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D   +  L G     NAL+A     A+ I    + +HL     +  R + V     G
Sbjct: 281 ---DLTSMTALRGRHNAQNALMALATLQALKITDPSMNKHLASYKGLDHRMQQV--RKMG 335

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             ++++ +  +N+ +     + T      IV
Sbjct: 336 AVLFINDSKATNA-DATAPALSTFNDIFWIV 365


>gi|299065670|emb|CBJ36843.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           CMR15]
          Length = 449

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/411 (16%), Positives = 131/411 (31%), Gaps = 40/411 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+  V+ +  S  +       +  +  V             +  +  + +LAV GT GK
Sbjct: 49  GADLYVIGNVISRGNPLMEAILDRNLPYVSGP----QWLGDNVLRQ--KWVLAVAGTHGK 102

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I Q +G     +     +    ++   +           + L++     + 
Sbjct: 103 TTTTSMLAWILQDAGYDPGFL-----VGGVPRNFGQS-----------ARLTASDFFVIE 146

Query: 187 VEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +         R   +  +       NL  DH D      A    +       +P +   
Sbjct: 147 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHLVRTVPGQGRL 205

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++   +   K V+ R     C   +  +  +      +  + +     + ++G+      
Sbjct: 206 LVNGREDSLKRVLARG----CWSEAEFFGAEDGAGWAIANLGDDDSFDVMLDGQVQGRVR 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PL G+    NAL A      +G+  A  +E L +   V  R E  GT   G  +Y D+A
Sbjct: 262 WPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-VDGITVYDDFA 320

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI----VTD 417
           H   ++   +  +R       I+            G        +L+ AD          
Sbjct: 321 HHPTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAAGG 380

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    D     A +      F +    +EA+  A       D ++V   G
Sbjct: 381 RDAIGWDLAGALAPLGERAQAFSDLTALVEAVTAA---ARPGDHVLVMSNG 428


>gi|271502044|ref|YP_003335070.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
 gi|270345599|gb|ACZ78364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
          Length = 437

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 140/400 (35%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        +   I ++ +   F          +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALATPVLCDAATAGIEIIGDIELF--------CREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V Q+   +G +    G     +                      L  Q      +
Sbjct: 117 TVTTLVGQMAHAAGWAVGVGGNIGVPA--------------------LELLKQESQLYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH + +    Q Y  AK+R++E         I+
Sbjct: 157 ELSSFQLE--TTHSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYEN----AKVCIV 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R LS G      HL +      + +  + V+G+        
Sbjct: 211 NADDALTMPV----RGADARCLSFGVDVGDYHLNR-----QQGETWLRVKGERVLNTREI 261

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+GI  +  L  L     +P RF+     +    +    A 
Sbjct: 262 KLVGQHNYTNALAALALADAVGIPRSSALTALTTFTGLPHRFQLSLERNGVRWVNDSKAT 321

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  ++    G + ++   G  +     P++  +  D   +     D      
Sbjct: 322 NVGSTEAALSGLQ--VDGTLHLLL-GGDGKSADFSPLLRYLQGDRIRLYCFGRD---GGQ 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     +A+R         D++++
Sbjct: 376 LAALRPEIAQ------QTDTMEQAMRLIASRTQPGDMVLL 409


>gi|76881227|gb|ABA56282.1| cyanophycin synthetase [Nostoc ellipsosporum]
 gi|157092715|gb|ABV22527.1| cyanophycin synthetase [synthetic construct]
 gi|157092741|gb|ABV22544.1| cyanophycin synthetase [Nostoc ellipsosporum NE1]
          Length = 901

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRFGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +       +   ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMISNALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV +D+     PR    E I   I    P   +    +  +AI   ++M     ++V+
Sbjct: 794 YIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVI 853

Query: 465 A 465
            
Sbjct: 854 L 854


>gi|126650750|ref|ZP_01722966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
 gi|126592415|gb|EAZ86433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
          Length = 497

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 127/352 (36%), Gaps = 25/352 (7%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV   AY   D    I     I+ V N  +    F      +    I+A+TGTSGK++ 
Sbjct: 95  VIVTDRAYRPNDIPTQII----IIQVANVDEAYWRFVHFYRNQFHIPIVAITGTSGKTTT 150

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ I       +      +T+SS ++           L   L+              
Sbjct: 151 KEMIKHILSADRQVTA-----TTLSSNSR--------TASLQYLLNIEDDTEAAVFETAV 197

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S G   +     K   G  TN+G  H++Y +T + Y  AK  + + + PK    II A+
Sbjct: 198 GSPGDVTNAGKYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPK-GTLIINAE 256

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D  +K++         RVL VG           +          +    K +D   P  G
Sbjct: 257 DMNTKKL--DISKFNGRVLKVGIHDSCHFRASHIQYYQKGMNFKLHHIRKIYDIFVPGFG 314

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           + QVYNAL A      IG+   +    L+    +  + +     +    +   ++ T+ S
Sbjct: 315 QHQVYNALAAIAAAYEIGVPIPVAANQLQSFRQLKKQLQLFEGINHSMLLDDTWSITTTS 374

Query: 369 LEMILKNIRTITSG-RIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVT 416
           LE  LK +  +  G + I V G   D            G++   +    ++T
Sbjct: 375 LEAGLKVLNDLGEGKKKIAVIGTITDLGSWGYIIHEQAGELIHRIGVDVLIT 426


>gi|294506930|ref|YP_003570988.1| UDP-N-acetylmuramate--L-alanine ligase [Salinibacter ruber M8]
 gi|294343258|emb|CBH24036.1| UDP-N-acetylmuramate--L-alanine ligase [Salinibacter ruber M8]
          Length = 491

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 19/278 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  +   T+L  DH D    +  Y  A    F   LP++    +  D    + +   A +
Sbjct: 204 RPQSAIVTSLEFDHADVFVDRDDYRGA-FEEFVGRLPRDGQLALCGDAPAVRAL---ADH 259

Query: 263 AGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V + G      I  + +    +    T+ +     +   PLPG   V NAL AA L
Sbjct: 260 TRAPVRTYGLAPSNDIRAEALTPTGSGLSFTLRMGRHREEVRLPLPGRHNVQNALAAALL 319

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TIT 380
               G+  + +   L        R + V        +  D+AH   ++   ++ +R    
Sbjct: 320 ARREGVSPSTIAAGLASFGG-MKRRQQVRGRPNDVLVVDDFAHHPTAVAATVEALRAAHP 378

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTD------DNP-RSEDPEKIRAEI 432
             R++ +F    +  +  R       A D AD   +        D+P    DP  +   I
Sbjct: 379 DRRLVAIFEPRSNTSRRTRFEAAYGTAFDAADRVFLKAPPVRHNDDPDAMLDPTAVAHTI 438

Query: 433 I-HGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
              G+P  + +   ++A+  T  + L   DV ++   G
Sbjct: 439 RDRGVPTEVFED--VDAVLPTLTDTLQPGDVALLMSNG 474


>gi|15678558|ref|NP_275673.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621604|gb|AAB85036.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 682

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG F + NAL A  + + +G D   +   +E    + GRFEF+     G R+Y+
Sbjct: 7   RINLRVPGIFNIENALAAITVALILGFDMEDIKRSIEDFRGIRGRFEFID-EVDGVRVYM 65

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D AH   S+E + + +     GR+IV            +  +G++  + A   IV+  N 
Sbjct: 66  DAAHNPESMEKLFEGME--FQGRLIVSLDNPDTLTVRDKERIGRVLAERAHTIIVSAKNE 123

Query: 421 RSEDPEKIRAEII---HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   +   A+ +    G    I+  +  ++IR A+E+    D ++  G G
Sbjct: 124 TTGVTDMEAADEVAWGAGEERTIKTESVYDSIRRALEIAEPGDTILHIGPG 174



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 122/384 (31%), Gaps = 71/384 (18%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            ++ I + +G+               + +     +   +    + L              
Sbjct: 313 MLKSIMRVAGMRV------------PEHHLNIQGNTELVPALQARLPGDVAVVEIGTFGR 360

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +       +  G  TN+ RDH+   +    Y   K  + E         ++ ADD 
Sbjct: 361 RGEIRSSAMLSGVSVGVITNISRDHLSAGRRFSDYIECKGEMVE----VAEDLVLNADDP 416

Query: 252 YSKEVMKRAHNAGCRVL-----------------------------SVGYQGKFIHLKK- 281
               +                                         ++G+ G +  +   
Sbjct: 417 IVASLADGLPRERVVFYGIQSSESGGVVPEGRECPKCGKPLRYTRRTIGHLGDYQCICGY 476

Query: 282 -------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                  +    +     + +  +  +     PG F VYNAL AA     +G++   ++ 
Sbjct: 477 LRPQPDVMAIEASPGGFKLVIGQEMREVRLATPGIFNVYNALAAAATAWTMGLEIDDIVR 536

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            LE    VPGRF+ +  + R   I +DYAH    +  +++++R    GR+IVV     + 
Sbjct: 537 GLESFKGVPGRFQELSESPR---IILDYAHNPAGVRAVMQDLRG--KGRLIVVNTVASES 591

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----------IEKGN 444
                  +  I L  AD+ I      R      I  E    I               +  
Sbjct: 592 GIDGDREIAAI-LKDADVVIPASYAARR--ASDILGERAVHIGSSRMRAGGGTLGASREQ 648

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
             EA+R A+E+    D +++ G+G
Sbjct: 649 VAEAVRKALELAGPDDTVLIIGEG 672


>gi|299535411|ref|ZP_07048733.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus fusiformis
           ZC1]
 gi|298729172|gb|EFI69725.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus fusiformis
           ZC1]
          Length = 437

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 110/349 (31%), Gaps = 45/349 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +A+S             + V+    KFL        G +    +A+TG  GK+S  
Sbjct: 64  VIAGNAFSDDHPELVRAREIGVEVI-RYHKFLGE----YIGNYTS--IAITGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +                            +      +EA 
Sbjct: 117 GLMAHVVGGYKPTSYLIGDGTGAG------------------------HENADFFVMEAC 152

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                +H L          TN+  DH DY    +  ++A   L  ++   +   I   DD
Sbjct: 153 E--YRRHFLAY-NPDYAVMTNIDFDHPDYFANIEDVYSAFQSLALQV---KKAIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGE 309
              + +  +           G +  F   + V       +  + V  + +  F  PL G+
Sbjct: 207 EQLQRIQAKVPVVY---YGFGAENDF-EARNVEKTTEGTKFDVFVRNEFYSTFFIPLFGD 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V N L    LC   GI   ++ E L     V  RF           +  DYAH    +
Sbjct: 263 HAVLNTLAVITLCEYEGISPDIIQERLHTYKGVKRRFTETDIGDN--VLIDDYAHHPTEI 320

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              +++ R       ++ +F                 +L LAD A + D
Sbjct: 321 RATIQSARQKFPERELVAIFQPHTFTRTQAFLQDFADSLSLADTAYLCD 369


>gi|62900690|sp|Q83GN2|MURD_TROWT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 480

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/430 (14%), Positives = 141/430 (32%), Gaps = 65/430 (15%)

Query: 62  QAIAQGAEAI------VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYG 111
            AI  GA  +      +          S  I  + P++     R+   L     A R+  
Sbjct: 58  DAI--GARYVCAYLDELCEVDVDFIVVSPGISPDNPVIKRLRDRQIPILSEIELAWRVRD 115

Query: 112 K-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           K +    + +TGT+GK++ A     +  + G      G   T                  
Sbjct: 116 KVNTCPWILITGTNGKTTTALLTGSMLAKDGARVAVCGNIGT------------------ 157

Query: 171 AKALSYLSSQGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
               +  + +G  ++ VE SS  L     H    +K  + +  NL  DH+++H  ++ Y+
Sbjct: 158 PVLDAVRNPKGFDYLVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYY 217

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIH-------- 278
            AK R++          +   DD  +K+++++A      R +  G     +         
Sbjct: 218 CAKSRVYHG---TTGFCVYNLDDEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGI 274

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L     +  ++   + +   +      L     + + L A  L  ++  +   +   L++
Sbjct: 275 LCDRAFLSARKDSALEITSVEKLEKNKLSMRHIISDVLCAVALARSVETNPLSISRALDE 334

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             + P R E V        +    A   +++   L N         +++   G  +    
Sbjct: 335 FCLSPHRTEVVAKEMGVMWVNDSKATNPHAVIASLSNF------SRVILIFGGLMKGVDV 388

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIE 454
             I  +    +  + ++  +         I+          +   +      EA+  A  
Sbjct: 389 SGIFDRFYETIKAVVVIGKNQSF---VGNIK------CKKIVCIPDSNDPMSEAVAAADL 439

Query: 455 MLNKQDVLVV 464
           +    D +++
Sbjct: 440 LATPGDTVLL 449


>gi|319764374|ref|YP_004128311.1| udp-n-acetylmuramoylalanine/d-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|330826593|ref|YP_004389896.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
 gi|317118935|gb|ADV01424.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|329311965|gb|AEB86380.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
          Length = 593

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 155/436 (35%), Gaps = 69/436 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNT-PILVVDNTRK------------FLSLFASRLYGKH 113
           GA  +   +  ++        ++  P+++  + R+             L    +R +G  
Sbjct: 149 GAALVEGHALDAVYRSPGLAPTDVAPVVIAASARQIIVGGELSLYSEALHELRTR-HGYA 207

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  +LA+TGT+GK++V S    +   +G S    G    I     D          L + 
Sbjct: 208 PA-VLAITGTNGKTTVTSLTGLLVDCAGKSVAVAG---NIGPTLLDTLGERLDAGQLPE- 262

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +E SS  LD     G +  A +  N+ +DH+D+H + QAY  AK R+
Sbjct: 263 ----------VWVLELSSFQLD--GAQGFEPTAATVLNVTQDHLDWHGSMQAYAQAKARI 310

Query: 234 FEELLPKESPAIIYADDAYSKEVMK------------RAH-----NAGCRVLSVGYQ--- 273
           F          I+  DD    +++             RAH     +   R    G +   
Sbjct: 311 FGA----AGLMILNRDDPLVMDMLPPPVRVKLQKPQLRAHVTFGGDMPQRPGDFGIEVVS 366

Query: 274 -----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 +     +       Q+  + V+         + G     NAL A  L  A G  
Sbjct: 367 GMAWLVRAHDADETARRGKVQEAELHVQRLMPADALRIRGRHNALNALAALALAQAAGCA 426

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A +L  L +    P R E VG        Y D +  +N +   +  +  + + R +V+ 
Sbjct: 427 LAPMLYGLREYRGEPHRVEPVGMVREVE--YFDDSKGTN-VGATVAALTGLGADRRLVLI 483

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
             G  + Q   P+   +A       ++  D P      +IRA +       ++     EA
Sbjct: 484 LGGDGKGQDFSPLAAPVARYARAAVLIGRDAP------QIRAALEGCGVPLLDAATLPEA 537

Query: 449 IRTAIEMLNKQDVLVV 464
           ++ A +  +  D +++
Sbjct: 538 VQLASQRAHAGDAVLM 553


>gi|163738713|ref|ZP_02146127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388041|gb|EDQ12396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
          Length = 465

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 129/388 (33%), Gaps = 45/388 (11%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
           A + +  P  V ++   F    A+R + +  +   I+AVTG++GKS+  + +  I Q +G
Sbjct: 89  AALVAGVP--VDNDIGLFFRSVATRGWERFDQAPRIVAVTGSNGKSTTVALLHHILQEAG 146

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             S   G    I     D        I +                +E SS+  D  R   
Sbjct: 147 RESQLAG---NIGRGVLDIDPPGSGGIVV----------------LELSSYQTDLAR--A 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL  DH+D H     YF AK RLF E  P  +   +  D+           
Sbjct: 186 LTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAIIGVDEDEGLYLAGQLSEA 245

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VEGKDFDFLFPLPGEFQVYNALV 317
            +  RV+ +    K   L                       D   +  LPG     NA  
Sbjct: 246 ASDDRVIRISASQKLTGLGWQVFARKGFLSEYRKGRQAASIDLRQMQGLPGAHNHQNACA 305

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A     A+G+   L+ + L     +P R + + T++    +    A   +S    L    
Sbjct: 306 AYAAARALGLAPRLIEDALASYPGLPHRSQTIATHAGVRYVNDSKATNLDSAVKALSAFD 365

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            I     I     G ++D G   + G+         I         +      ++   + 
Sbjct: 366 NIR---WIC---GGLEKDGGLEALRGQTGKVRKAYVI-------GREAAGFAMQLD--VE 410

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +      EA+  A       D +++A
Sbjct: 411 AEVCIT-MAEAVARASAEAETGDTVLLA 437


>gi|222446083|ref|ZP_03608598.1| hypothetical protein METSMIALI_01732 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435648|gb|EEE42813.1| hypothetical protein METSMIALI_01732 [Methanobrevibacter smithii
           DSM 2375]
          Length = 478

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 151/423 (35%), Gaps = 46/423 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127
           A +++              N P++VVD      +        K       + +TGT+GKS
Sbjct: 61  ACLITQTPQDGACDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA------LSYLSSQG 181
           + +  +  I + +G+       T+T S    +  +       ++        L YL    
Sbjct: 121 TTSHLIYHILKNTGVHV----LTNTDSESEFNTLIDPMVSKLISDEVKNNGKLDYLV--- 173

Query: 182 VTHVSVEASSHGLDQHRL----DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +    V+     L +H        +K   G  TN+  DHI    +    F+   ++   +
Sbjct: 174 IEVSEVQGWLGNLMKHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNAI 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +   ++  DD    ++  + H   C + ++  +   ++         K+ +      
Sbjct: 234 --GDGVTVLNYDDDLVMKLTPK-HPFLCSMNNMDSKNPNVYYDNGIFYEGKRILE----- 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +   P      + N L A   CI++ +D   ++E ++    +  RF  +  N     
Sbjct: 286 ---NKDLPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLHEN---PL 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPI-MGKIALDLAD--I 412
           I  D+AH  + ++  +   R +   +  + VV    G R      + +  +A  + D   
Sbjct: 340 IVDDFAHNPDGIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALAESMDDNTK 399

Query: 413 AIVTDDNP------RSEDPE-KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +++  N         ED E +I  E++      +    N  + ++   +  +  D++++
Sbjct: 400 LVLSSSNDVVDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILL 459

Query: 465 AGK 467
            G 
Sbjct: 460 IGA 462


>gi|161507313|ref|YP_001577267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           helveticus DPC 4571]
 gi|260102632|ref|ZP_05752869.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           helveticus DSM 20075]
 gi|172048225|sp|A8YUN8|MURD_LACH4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160348302|gb|ABX26976.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           helveticus DPC 4571]
 gi|260083556|gb|EEW67676.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           helveticus DSM 20075]
          Length = 459

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 117/357 (32%), Gaps = 49/357 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I     Q+SG  ++ +G      S               
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD------ 166

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF----TNLGRDHIDYHQTQQAY 226
                         + VE SS  L    +  I     +      N+   H+DYH+T + Y
Sbjct: 167 ------------DILVVEISSFQLL--GVTDIDPKVAAIVDIYNNV---HLDYHKTFENY 209

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            NAK+         +   I   D        K    A  +  S         +       
Sbjct: 210 VNAKLN-VTRTQNSDDYFIANYDQKDILAKEKEVTPAKMQTFSETDSSADYFIGDEYLES 268

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +++   V+         LPG   + N+LVA  +   +G D+  +   L        R 
Sbjct: 269 QNEKIMKIVD-------IKLPGIHNLQNSLVAIAISKVMGADNDDIAAVLSTFTGAKHRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++V T   G ++Y D   T+  +E     I +       V+   G DR      ++    
Sbjct: 322 QYVTT-LDGRKVYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFLFDDLVPLFK 376

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             +  I +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 377 KHVKSIVLYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELSEPGDVIL 428


>gi|49475857|ref|YP_033898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           henselae str. Houston-1]
 gi|62900525|sp|Q6G2Q3|MURD_BARHE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49238665|emb|CAF27911.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Bartonella
           henselae str. Houston-1]
          Length = 466

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 123/351 (35%), Gaps = 59/351 (16%)

Query: 91  PILVVDNTRKF---------LSLFASRLYGKHPE------NILAVTGTSGKSSVASFVQQ 135
           P  VVD  R+          L + A   + +           +A+TGT+GKS+  + +  
Sbjct: 82  PHWVVDKARQANIEIIGDIELFVRARNHFLQQYGFCDEDVPFIAITGTNGKSTTTALLAH 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + ++ G      G   T                     L+           +E SS  +D
Sbjct: 142 LLEQMGYDVQMGGNIGT-------------------AILTLKPFVKKRIYVIECSSFQID 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 ++   G   NL  DHID H +   Y NAK    + L+   S A I  DDA  + 
Sbjct: 183 LA--PSLQPTIGLLLNLTPDHIDRHGSFAHYVNAK----KNLVTGASQAFISVDDAACQV 236

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LFPLPGEF 310
           + ++  + G  V +V  +    H  +     +  Q+    +G+         +  L G  
Sbjct: 237 LYRQLLHEGHHVEAVSKE----HFVENGFYADGTQLFSVCQGRRHMLADLASMAALRGSH 292

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--- 367
              NAL+A     A+ I    + +HL     +  R + V     G  ++++ +  +N   
Sbjct: 293 NAQNALMALATLQALKITDPHMNKHLASYQGLAHRMQQV--RKMGSVLFINDSKATNAEA 350

Query: 368 --SLEMILKNIRTITSGRII---VVFGCGGDRDQGKRPIMGKIALDLADIA 413
                    NI  I  G+     +V   G      K  ++G  A + A + 
Sbjct: 351 SAPALAAFNNIFWIVGGQAKEAGIVSLRGFFHKIRKAYLIGAAAEEFAGVI 401


>gi|58337117|ref|YP_193702.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus NCFM]
 gi|227903691|ref|ZP_04021496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus ATCC 4796]
 gi|62900453|sp|Q5FKV3|MURD_LACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|58254434|gb|AAV42671.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           acidophilus NCFM]
 gi|227868578|gb|EEJ75999.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 459

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 116/357 (32%), Gaps = 49/357 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + +TG++GK++     Q+I     Q++G  ++ +G      S               
Sbjct: 113 APYVCITGSNGKTTTVMLTQRILDHHLQKTGHHAYAVGNIGVPISEVVPKATKD------ 166

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF----TNLGRDHIDYHQTQQAY 226
                         + VE SS  L    +  IK    +      N+   H+DYH+T + Y
Sbjct: 167 ------------DILVVEISSFQLL--GVTDIKPKVAAIVDIYNNV---HLDYHKTFENY 209

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            +AK+         +   I   D        K    A  +  S         +       
Sbjct: 210 VDAKLN-VTRTQNSDDYFIANFDQKDILAKEKEVSPAKMQTFSETDHNADYFIGDEYLES 268

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +++    +         LPG   + N+LVA  +   +G D+  +   L        R 
Sbjct: 269 QDEKIMKIAD-------IKLPGVHNLQNSLVAIAIAKLMGADNEDIAAVLSTFTGAKHRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++V T   G +IY D   T+  +E     I         V+   G DR      ++    
Sbjct: 322 QYVTT-LDGRKIYNDSKSTN--IEAATVAIPAFKEPE--VLIAGGLDRGFTFDDLVPLFK 376

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             +  I +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 377 KHVKSIVLYGETKYLLADAAR-----KAGIKEIVIVNTLQEAVPRAYELTEPGDVIL 428


>gi|197287210|ref|YP_002153082.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Proteus mirabilis HI4320]
 gi|227357096|ref|ZP_03841466.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Proteus mirabilis ATCC 29906]
 gi|194684697|emb|CAR46660.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Proteus mirabilis
           HI4320]
 gi|227162788|gb|EEI47751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Proteus mirabilis ATCC 29906]
          Length = 459

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 118/370 (31%), Gaps = 39/370 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +     +    Q +     SP ++ +
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEDCGYQPGFL--IGGVPGNFQVSAQLGESPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+           S                   NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYS------------PRTLILNNLEFDHADIFDDLTAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P     I+  +D   K+ +              Y G+    +     ++     
Sbjct: 207 LV-RIVPGSGKIIMPDNDLNLKQTI-----GMGCWSEEEYTGETGDWQAKKISNDSSHFA 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+   +  + L GE  + N L+A      +G+        L K      R E  G 
Sbjct: 261 VFHKGEQVGEVCWGLSGEHNMQNGLMAIVAAHHVGVLPVDACAALNKFINARRRLELRGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALD 408
            ++   +Y D+AH   ++   L+ +R+   G  RII V          G        AL 
Sbjct: 321 VNQ-VSVYDDFAHHPTAILATLEALRSKVGGTARIIAVLEPRSNTMKMGISKDDIAPALG 379

Query: 409 LADIAIVTDDNPRSEDP--EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            AD   +       + P  + + ++I    +       +    +    +     D +++ 
Sbjct: 380 RADEVFL------FQPPNIQWLVSDIAEKCVQPARWSTDIDTLVEMVAKEAKPGDHILIM 433

Query: 466 GKG-----HE 470
             G     HE
Sbjct: 434 SNGGFGGIHE 443


>gi|197123867|ref|YP_002135818.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. K]
 gi|196173716|gb|ACG74689.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. K]
          Length = 474

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 121/376 (32%), Gaps = 37/376 (9%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           F +       G  P + + V GT GK++ ++ +  +   +G             SF    
Sbjct: 99  FPAALGELFIG--PRHGVVVVGTHGKTTTSAMMGFVLHHAGRDP----------SFLVGG 146

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                   +   +  +   +G  + +          H     +     FT+   DH D +
Sbjct: 147 VTRDFDSNFRLGSGPHFVVEGDEYDTAYFDKGPKFLHY----RPRTAIFTSCELDHADIY 202

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           + +  Y +A    F +LLP +      A     + +  RA         V   G     +
Sbjct: 203 RDEAHYESA-FERFADLLPPDGFLAACAAYESVRRISARAR-CRIETYGVDVAGADWEAR 260

Query: 281 KVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +    +  + T+   G    +   P+ G   V NAL  A    A+G+  A +   L   
Sbjct: 261 GLSLGPDGARFTLVRRGAPLAEVHLPVGGAHNVENALGVAAAATALGLSPAEIAAGLGAF 320

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQ 396
           H V  R E  GT   G  +  D+AH   ++   L  +R    G  ++          R  
Sbjct: 321 HGVRRRQEVRGTAG-GVTVIDDFAHHPRAVRKTLAAVRGSFPGARMLAAFEPRSNTSRRN 379

Query: 397 GKRPIMGKIAL-DLADIAIVTDDNPRSEDPEKIRAEI--------IHGIPG-FIEKGN-R 445
             +      A    A    V    P    PE  R ++         HG+P    +  +  
Sbjct: 380 LHQADYSDPATWSGAAEVFVLRPAPTDRVPEAERLDVDAVVRALAAHGLPARVFDAVDPL 439

Query: 446 IEAIRTAIEMLNKQDV 461
           +EAI          DV
Sbjct: 440 VEAIA---ADARPGDV 452


>gi|208434651|ref|YP_002266317.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27]
 gi|208432580|gb|ACI27451.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27]
          Length = 470

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 142/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D      +   +     
Sbjct: 146 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDNNSEI----- 200

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 201 YIAEAG-------ARNKGDIKEITLLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLD 253

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++ V        +K + +        + +
Sbjct: 254 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDVS-----SLVKNIQSTLKGTSFEMLI 301

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + G+F  YN   A  +   +G+++  +   + +L  +  R + +  N + 
Sbjct: 302 DSVWERFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVFELKPINHRLQLLEVNQK- 360

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 361 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNEALAQKIDGVFDVA 417

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++  +++E I  A  +  + D+++ A
Sbjct: 418 IITGE----LNSKTIASQLKTPQKILLKDKSQLENILQATTI--QGDLILFA 463


>gi|330895229|gb|EGH27567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 448

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 124/352 (35%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T                    AL
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGT-------------------PAL 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             LS + V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 150 DLLSDE-VELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 DGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSGLRAPVAKHCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +P  +       A+  + ++  + D +++
Sbjct: 376 VLL------GRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLALRGDAVLL 420


>gi|302391529|ref|YP_003827349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203606|gb|ADL12284.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 454

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 121/324 (37%), Gaps = 21/324 (6%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L + ++ L+ +GV     E SS  L+  R    +       NL  DH++ H T + Y  A
Sbjct: 148 LIEDITSLTDKGVVVA--EISSFQLENIR--DFRPKISLILNLTPDHLNRHGTFEDYIAA 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K ++F     +    ++  DD  ++ +   A   G  V+    Q +  H           
Sbjct: 204 KKKIFINQT-ESDYTVLNYDDELTRGL---ADETGGEVIYFSQQSRLNHGIYAAEGKIIN 259

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +T   E         + G   + NAL A  + +  GID  ++ + L++   +  R E V
Sbjct: 260 NLTADNEPLIQIDETGIKGPHNLENALGAVVIALLRGIDVKIIRKVLQEFSGIEHRIEEV 319

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T      I    A    +    L+          I +   G D+         KI  ++
Sbjct: 320 ATIEGIKYINDSKATNPAAAIKALETFSA-----PITLIAGGMDKKAELTDFAFKIEENV 374

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++ ++       E  EKI   +         +  +  EA++ A E+  K  ++++A  G
Sbjct: 375 QNLILL------GETAEKIEESVTEFRFSNIKQVDSISEAVKEAEEVSVKGSIVLLA-PG 427

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
             +  +  + +++ +     + E+
Sbjct: 428 CASWDMFGSYKERGNRFKKEVMEL 451


>gi|89099607|ref|ZP_01172482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
 gi|89085760|gb|EAR64886.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
          Length = 450

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 113/333 (33%), Gaps = 39/333 (11%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V ++ +  G S    G   T+++   +      S   +   LS     G+         
Sbjct: 129 LVHEMLEAGGKSPLIAGNIGTVATGVAEGAR---SDHTIVIELSSFQLMGIEAF------ 179

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                      +      TNL   H+DYH T+  YF AK  + +    +E   II AD  
Sbjct: 180 -----------RPKIAILTNLYDAHLDYHGTRHDYFEAKANITKNQT-EEDYFIINAD-- 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + V++ A  +  R++          + +  A      +  + E         LPG   
Sbjct: 226 -QEAVIQLAEESRARIVPFSVS----RVLEAGACVKDGWICFNGEPVMKREDASLPGNHN 280

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L +       G+D+  + + +     V  R +++G    G + Y D   T+     
Sbjct: 281 LENILSSIAAAKLSGVDNKAIFKVMSSFAGVKHRLQYIG-EVDGRKFYNDSKATN----- 334

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           IL     I +  + V+   GG         +     ++  +        + E+  K    
Sbjct: 335 ILATKNAIAAFDVPVILLAGGLDRGNGFEELIPSLANVETLITFGQTAGKIEEAGK---- 390

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + GI   +   N   A+  A  +    DV+++
Sbjct: 391 -LAGIKSIMRVDNVASAVPAAHRLSKPGDVILL 422


>gi|328468646|gb|EGF39640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           helveticus MTCC 5463]
          Length = 392

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 117/357 (32%), Gaps = 49/357 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I     Q+SG  ++ +G      S               
Sbjct: 46  APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD------ 99

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF----TNLGRDHIDYHQTQQAY 226
                         + VE SS  L    +  I     +      N+   H+DYH+T + Y
Sbjct: 100 ------------DILVVEISSFQLL--GVTDIDPKVAAIVDIYNNV---HLDYHKTFENY 142

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            NAK+         +   I   D        K    A  +  S         +       
Sbjct: 143 VNAKLN-VTRTQNSDDYFIANYDQKDILAKEKEVTPAKMQTFSETDSSADYFIGDEYLES 201

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +++   V+         LPG   + N+LVA  +   +G D+  +   L        R 
Sbjct: 202 QNEKIMKIVD-------IKLPGIHNLQNSLVAIAISKVMGADNDDIAAVLSTFTGAKHRL 254

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++V T   G ++Y D   T+  +E     I +       V+   G DR      ++    
Sbjct: 255 QYVTT-LDGRKVYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFLFDDLVPLFK 309

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             +  I +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 310 KHVKSIVLYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELSEPGDVIL 361


>gi|71734389|ref|YP_276232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|118595674|sp|Q48EF6|MURD_PSE14 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71554942|gb|AAZ34153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322452|gb|EFW78545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330079|gb|EFW86066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330874996|gb|EGH09145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 448

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 120/352 (34%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLLEENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 DGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSALRAPVAEHCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +   +       A+  +  +  + D +++
Sbjct: 376 VLL------GRDAELIAQALGDAVT-LVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|290579918|ref|YP_003484310.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus mutans
           NN2025]
 gi|44888211|sp|Q8DSP4|MURC_STRMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24378099|gb|AAN59364.1|AE015001_9 putative UDP-N-acetyl muramate-alanine ligase [Streptococcus mutans
           UA159]
 gi|254996817|dbj|BAH87418.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus mutans
           NN2025]
          Length = 452

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 91/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V G  GK+S    +  + +    +S+ IG  +                          
Sbjct: 115 LGVAGAHGKTSTTGLLAHVLKNITDTSYLIGDGTGRG---------------------LA 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +SQ     S E   H +  H            TN+  DH DY       F A     +++
Sbjct: 154 NSQYFVFESDEYERHFMPYH------PEYSIITNIDFDHPDYFTGVDDVFAAFNDYAKQV 207

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D Y +++   A      +   G+          +    N     +   
Sbjct: 208 ---KKGLFVYGEDPYLRKLTSSAP-----IYYYGFKDNDDFVAYDIMRSTNGSDFKVRHG 259

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +   F  P  G   V NA          G++  LV +HL+    V  RF     N   
Sbjct: 260 QNELGSFHVPAFGRHNVLNATAVIANLYIAGVEMDLVRQHLKTFSGVKRRFSEKLIND-- 317

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 318 VTIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAQALNEADSVY 377

Query: 415 V 415
           +
Sbjct: 378 L 378


>gi|227327093|ref|ZP_03831117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 438

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 140/400 (35%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALATPILCDAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLPA--------------------LQLLEQPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH + +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEH----ADLCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R  S G      HL +      + +  + V+G+        
Sbjct: 212 NADDALTMPV----RGADARCRSFGVDVGDYHLNR-----QQGETWLRVDGERVLNTREI 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+ I  +  L  L     +P RF+     +    I    A 
Sbjct: 263 KLVGQHNYTNALAALALADAVKIPRSSALTALTSFTGLPHRFQMAFERNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P++  +  +   +     D    + 
Sbjct: 323 NVGSTEAALSGLA--VEGTLHLLL-GGDGKSADFSPLVPYLQGEHIHVYCFGQD---GQQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     +A+    E +   D++++
Sbjct: 377 LAALRPEIAE------QTETMEQAMCIIAERVKPGDMVLL 410


>gi|187479470|ref|YP_787495.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella avium 197N]
 gi|115424057|emb|CAJ50610.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella avium 197N]
          Length = 456

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 117/363 (32%), Gaps = 31/363 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++ +S +  I + +GL    +             R    S  ++ +
Sbjct: 101 PQSHVLAVAGTHGKTTTSSMLAWILEEAGLKPNFL-IGGVAPDLKVSARYQFGSRPFVIE 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y ++                       +       NL  DH D      A    +  
Sbjct: 160 ADEYDTAFFDKRSKFVHY------------RPRTAILNNLEYDHADIFPDLAAI-ETQFH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   ++       + V+ R      R +  G  G +               T
Sbjct: 207 HLVRTIPSEGCVVLPTRSEALERVLAR--GCWSRTVRFGAGGAWQAGPADEL----GAFT 260

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+D     + L GE    NAL A      IGI ++  +  L +   V  R E  GT
Sbjct: 261 VLRDGRDQGMVRWSLGGEHNRMNALAALAAAENIGIPASDGIAALCRFGGVKRRMELRGT 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
              G ++Y D+AH   ++   +  +R       I+              +  ++  AL  
Sbjct: 321 -INGVKVYDDFAHHPTAIATTIAGLRRQVGPARILAVLEPRSNTMKLGTMAARLPQALAG 379

Query: 410 ADIAIV----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD           +    +P ++ + +        +    + A+  A       D ++V 
Sbjct: 380 ADQVFCFGAQEGKHALGWNPTEVLSPLGERASSHDDLNALVNAVARA---AAPGDHILVM 436

Query: 466 GKG 468
             G
Sbjct: 437 SNG 439


>gi|120609513|ref|YP_969191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
 gi|120587977|gb|ABM31417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
          Length = 667

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 150/418 (35%), Gaps = 56/418 (13%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            ++L A +    +   +LA+TGT+GK++V S    + + +G S    G    I     D 
Sbjct: 267 AMALDALKASHGYAPAVLAITGTNGKTTVTSLTGLLVECAGRSVAVAG---NIGPTLLDT 323

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    L +A             +E SS  L+     G +  A +  N+ +DH+D+H
Sbjct: 324 LGRHLDADTLPQA-----------WVLELSSFQLE--GAAGFEPTAATVLNVTQDHLDWH 370

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADD-----------------AYSKEVMKRAHNA 263
              QAY  AK R+F E        ++  +D                    +  +    + 
Sbjct: 371 GDMQAYARAKARIFGE----SGLMVLNREDAAVMGMLPPPVRVKLQKPQLRAHVTFGADM 426

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPG-------EFQVYN 314
             R    G +        V A  + +    T S   +D      +P             N
Sbjct: 427 PQRPGDFGIETVNGMAWLVRAQESDETARRTRSHAEEDLHIQRLIPADALRIRGRHNAVN 486

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L  A G   A +L  L +    P R E VG  +     Y D +  +N +   + 
Sbjct: 487 ALAALALAHAAGCAFAPMLYALREYRGEPHRVEPVGRVNEVE--YFDDSKGTN-VGATVA 543

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +  + + R +VV   G  + Q   P+   ++  +    ++  D P      +IRA +  
Sbjct: 544 ALGGLGADRRVVVILGGDGKGQDFSPLAMPVSRYVRAAVLIGRDGP------QIRAALRD 597

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                I+     EA+R A +  +  D ++       +  +  N E +  V  + ++ +
Sbjct: 598 AGVPLIDAPTLPEAVRLAAQRAHAGDAVL-MSPACASFDMFRNYEHRAEVFREAVQAL 654


>gi|146342500|ref|YP_001207548.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. ORS278]
 gi|146195306|emb|CAL79331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bradyrhizobium sp.
           ORS278]
          Length = 466

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 156/462 (33%), Gaps = 60/462 (12%)

Query: 55  DGHLFIPQAIAQG--------------AEAIV---VSSAYSLQDFSATIRSNTPILVVDN 97
           DG   + +A   G              A  ++   V   + +  +S        + V+ +
Sbjct: 40  DGADRMTEAAKAGFITADLRTVSWSNFAALVLAPGVPLTHPVPHWSVLRAREAGVEVIGD 99

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
              F      R         +A+TGT+GKS+  + +  + + +G  +   G   T     
Sbjct: 100 IELFCRE---RRRHAPDAPFIAITGTNGKSTTTALIAHLMRVAGYDTQMGGNIGT----- 151

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                           LS    +      +E SS+ +D      +    G   N+  DHI
Sbjct: 152 --------------AILSLEPPRMGRVHVIEMSSYQIDL--TPSLDPSIGILLNVSEDHI 195

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-F 276
           D H T + Y   K RL   + P+   AI+  DD + + +  R   AG RV+ +  +    
Sbjct: 196 DRHGTIENYAAVKERLVAGVKPQ-GTAIVGVDDGFCRAIADRLDQAGKRVVRISVKNPLA 254

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             L        +       E      +  L G+    NA  AA   +AIG+   ++ + L
Sbjct: 255 DGLYTEHETIVRSSGGARSEVARLGGIGSLRGQHNAQNAACAAAAALAIGVREDVLQQGL 314

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                +  R E VG    G  ++V+ +  +N+ +     + +      I     G  +  
Sbjct: 315 RSFPGLAHRMEQVG--RLGNVLFVNDSKGTNA-DATAHALSSFADIFWIA---GGKPKAG 368

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           G   + G          I        E  ++    +   +P  +  G    A+  A    
Sbjct: 369 GITSLAGFFPRIRKAYLI-------GEAAKEFAGTLGEKVPHAMS-GTLEVAVEQAAADA 420

Query: 457 NK---QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                ++ +V+      +     N E + +   D+++ + G+
Sbjct: 421 KASGLKEAVVLLSPACASFDQFRNFEIRGTRFRDLVQALPGV 462


>gi|148642419|ref|YP_001272932.1| peptide ligase [Methanobrevibacter smithii ATCC 35061]
 gi|148551436|gb|ABQ86564.1| cell wall biosynthesis protein, MurD-like peptide ligase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 478

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 151/423 (35%), Gaps = 46/423 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127
           A +++              N P++VVD      +        K       + +TGT+GKS
Sbjct: 61  ACLITQTPQDGACDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA------LSYLSSQG 181
           + +  +  I + +G+       T+T S    +  +       ++        L YL    
Sbjct: 121 TTSHLIYHILKNTGVHV----LTNTDSESEFNTLIDPMVSKLISDEVKNNGKLDYLV--- 173

Query: 182 VTHVSVEASSHGLDQHRL----DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +    V+     L +H        +K   G  TN+  DHI    +    F+   ++   +
Sbjct: 174 IEVSEVQGWLGNLMKHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNAI 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +   ++  DD    ++  + H   C + ++  +   ++         K+ +      
Sbjct: 234 --GDGVTVLNYDDDLVMKLTPK-HPFLCSMNNMDSKNPNVYYDNGIFYEGKRILE----- 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +   P      + N L A   CI++ +D   ++E ++    +  RF  +  N     
Sbjct: 286 ---NKDLPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLHEN---PL 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPI-MGKIALDLAD--I 412
           I  D+AH  + ++  +   R +   +  + VV    G R      + +  +A  + D   
Sbjct: 340 IVDDFAHNPDGIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALAESMDDNIK 399

Query: 413 AIVTDDNP------RSEDPE-KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +++  N         ED E +I  E++      +    N  + ++   +  +  D++++
Sbjct: 400 LVLSSSNDVVDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILL 459

Query: 465 AGK 467
            G 
Sbjct: 460 IGA 462


>gi|308184524|ref|YP_003928657.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180]
 gi|308060444|gb|ADO02340.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180]
          Length = 493

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 141/354 (39%), Gaps = 40/354 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++ V        +K + +          +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDVS-----SLVKNIQSTLKGTSFETLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G    F   + GEF  YN   A  +   +G+++  +   + +L  +  R + +  N + 
Sbjct: 325 NGVWERFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVFELKPINHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLHQGRKVIVTPGLVESNTESNEALAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--EAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++   IP  I   ++   E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASKLK--IPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|282882890|ref|ZP_06291495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297301|gb|EFA89792.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
          Length = 438

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 20/289 (6%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L ++    + +EASS  L+       K      T + +DH+D+H+T+  Y NAK ++F  
Sbjct: 142 LEAKNNDFIVIEASSFQLED--THEFKPKVALLTYVTKDHLDWHKTEDNYRNAKYKIFAN 199

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K+  +II  DD  S++ +K   +      +     +  +L     I     +     
Sbjct: 200 Q-DKDDFSIINYDD-RSRDDLKDLKSNIYYFSTEKKDIRGCYLDDGKIIFKDGDIREE-- 255

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V N + A  +     + + ++ + ++    V  R EFV     G 
Sbjct: 256 -IIDIKDIKIPGIHNVKNVMGAIIIAKIFNVSNDIIKQSIKIFSGVEHRIEFVK-KVNGV 313

Query: 357 RIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             Y D      +S    L  ++ +T+  I++  G G D+      +M  IA +L  + + 
Sbjct: 314 SFYNDSKGTNPDS---TLVAVKAMTNKTILI--GGGYDKGSDFNSLMENIAPNLRSLIVF 368

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               P+     K      +GI  FI K +   A++  + +  K D +++
Sbjct: 369 GQTGPKMAKEAK-----NYGIEVFIVK-DLPAAVKLGVSLAKKGDSILL 411


>gi|238892710|ref|YP_002917444.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545026|dbj|BAH61377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 457

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 120/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I    G     +     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILDACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+  +D   K+VM  A         VG QG     KK+ A  ++ +V + 
Sbjct: 209 -RIVPGKGKIILPENDINLKQVM--AMGCWSEQELVGEQG-HWQAKKLNADASQWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
           G  +Y D+AH   ++   L+ +R    G   I+                  +A  L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++  +    + T  EM     +  D ++V   
Sbjct: 383 EVFLLQ-------PQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|254490663|ref|ZP_05103848.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophaga thiooxidans DMS010]
 gi|224464119|gb|EEF80383.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophaga thiooxydans DMS010]
          Length = 449

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 117/359 (32%), Gaps = 29/359 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK++ +S +  I + +G+S   +     I     +   T         
Sbjct: 101 QGRWVLAVSGTHGKTTTSSLLAWILEHAGMSPGFL-----IGGVPDNFGETARLGKTPFF 155

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +                 H L +              NL  DH D      A       
Sbjct: 156 VIEADEYDTAFFDKRSKFVHYLARTL---------VINNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P E   I   + A  + +   A        S+G +  +   +     ++  +  
Sbjct: 207 LI-RTVPSEGLIISPQEKAIEQVL---AMGCWTPRQSLGNESDW---QATLLKNDGSEFE 259

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +S  GK     + + G+  V NAL A      +G+  A   E L     V  R E  G  
Sbjct: 260 VSFAGKTGTVNWSMLGQHNVNNALAAIAAAHHVGVTVAHACEALSAFAGVKRRLELRG-E 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LA 410
               R+Y D+AH   ++   +  +R     + +V                  +A     A
Sbjct: 319 VDNIRVYDDFAHHPTAIATTIAGLRAKIGNKKLVAVLEPRSNTMKMGVHQDALAQSLIQA 378

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           D  ++  D+    D +    ++   +   +   + I+ I   ++    + D +VV   G
Sbjct: 379 DRVLLLQDS----DLKWSLKQVTDELGDHVSVFDSIDTIVKTLQTEAQQGDEIVVMSNG 433


>gi|229817317|ref|ZP_04447599.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
 gi|229785106|gb|EEP21220.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
          Length = 484

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 142/415 (34%), Gaps = 40/415 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S  ++ +       +   I V+        L  +      P   + +TGT+GK+S  
Sbjct: 57  VMASPVFNPRTPFILEAAKRGIPVMSEVEFAWQLRVANERTGKPAPWIGITGTNGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                +    GL +   G  ++  + +        +P +               + VE S
Sbjct: 117 EMTSAMLSACGLDAPTAGNIAS-GNMSMSLSRCVTNPKH-------------DALCVELS 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S     H  D ++L   + TN+  DH+D+H  ++ Y   K ++F  +   +   +  ADD
Sbjct: 163 SFQ--MHFTDSLELDCAAITNIADDHLDWHGGRENYAADKAKVFHRV---KRALVYNADD 217

Query: 251 AYSKEVMKRAHNAG-CRVLSVGY-----------QGKFIHLKKVCAIHNKQQVTISVEGK 298
           A        A  A  CR +                G  + +  V +    +   ++  G+
Sbjct: 218 AVVTAKANEAETAEGCRRIGFTLGVPQAGQIGVADGWIVDMSGVASGEFGKPNRLAPVGE 277

Query: 299 DFDFLFP--LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NS 353
                 P        + +AL A  L + +G+DS   LE L+       R   V     + 
Sbjct: 278 FTHLAEPDGTIYPHLLADALTALALALGLGVDSGKALEALKSFAPGGHRIATVAATAPDE 337

Query: 354 RGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  I +VD +  +N+  +            + +  G                AL  A +
Sbjct: 338 HGNVIRFVDDSKATNAHAVKASISSFAQGSVVWIAGGLAKGSRFEDLVASQSKALRGA-V 396

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            I TD  P  E       +I   +  P    +     A++ A  M    DV+++A
Sbjct: 397 IIGTDQAPMLEAFASQAPQIPLAVIDPSTPNEQVMERAVQEAGRMAQPGDVVLMA 451


>gi|237809280|ref|YP_002893720.1| UDP-N-acetylmuramate [Tolumonas auensis DSM 9187]
 gi|237501541|gb|ACQ94134.1| UDP-N-acetylmuramate [Tolumonas auensis DSM 9187]
          Length = 456

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 114/359 (31%), Gaps = 26/359 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++ V GT GK++ AS V  I + +GL    +     I     +     P    L K
Sbjct: 101 QQRWVIGVAGTHGKTTTASMVAWILEHAGLEPGFL-----IGGVPGN----FPFSARLGK 151

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  ++        +          +R            NL  DH D      +       
Sbjct: 152 APFFVIEADEYDCAFFDKRSKFVHYR-----PRTLIMNNLEYDHADIFPDLASIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     ++ A D    EV  R       V  V   G     K +          
Sbjct: 207 LV-RTVPSNGRILMPAHDPALAEV--RTMGCWSEVELVEGDGANWQAKLLKED--GSAFV 261

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + + G+   +  +   G   V+N L+A       G+ +A  +  L +  +   R E  G 
Sbjct: 262 VLLNGEVQGEVHWSGLGRHSVHNGLMAIAAARHAGVRTADGIAALSEFVMPKRRMELRGE 321

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
            + G ++Y D+AH   ++   +  +R       I+                G++  +L  
Sbjct: 322 VA-GIKVYDDFAHHPTAIATTIAGLRANVGTARILAVLEPRSNTMKMGVHQGELIKSLVQ 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD A +        D  ++       IP  ++  +    +   +      D ++V   G
Sbjct: 381 ADKAYMFAPTGLGWDIHQLAQ--KAPIPTTVQ-HDINHLVDMLVAEAKSGDQILVMSNG 436


>gi|154685939|ref|YP_001421100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           amyloliquefaciens FZB42]
 gi|166224750|sp|A7Z4E3|MURD_BACA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154351790|gb|ABS73869.1| MurD [Bacillus amyloliquefaciens FZB42]
          Length = 451

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 123/350 (35%), Gaps = 39/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++  + + ++ +   + +   G   T++S   +         ++   L
Sbjct: 113 AKFIGITGSNGKTTTTTLIYEMLKADSIKTLIAGNIGTVAS---EVAYHADGDEWIVTEL 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S     G                     +   G   N+   H+DYH +++ Y  AK  ++
Sbjct: 170 SSFQLMGTHAF-----------------RPEIGLILNVFDAHLDYHHSRENYEKAKQNVY 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L +   AI+   D     + +          SV  +       K   +    +  + 
Sbjct: 213 LHQL-ESDTAIVNQSDETVVRLAESGKAGTVP-FSVHQELSSGAFIKDGMLMFGDEAILP 270

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V+         LPG   + N L A       G  +  + + L     V  R ++V T  +
Sbjct: 271 VDD------IVLPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVKHRLQYV-TAIQ 323

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + Y D   T+  +    K +    +   +++   G DR  G   +   +    A +  
Sbjct: 324 NRKFYNDSKATN--ILATSKALSAFKAP--VILLAGGLDRGNGFDDLKPYMDNVKA-VLT 378

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 379 FGQTAPKIE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|56416380|ref|YP_153454.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma marginale str. St.
           Maries]
 gi|56387612|gb|AAV86199.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma marginale str. St.
           Maries]
          Length = 278

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 78/215 (36%), Gaps = 12/215 (5%)

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFD--FLFPLPGEFQVYNALVAAGL 321
           C  ++ G +G  +       + +     I  + G++       P+PG   V NAL AA +
Sbjct: 37  CSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEICCGVRLPVPGRHNVENALAAAAV 96

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TIT 380
              IG+    +   LE    V  RFE +  N  G     DYAH    +E      + + T
Sbjct: 97  AKHIGVGCNYIKAGLEGFMGVGRRFEII-ANVGGVTFVDDYAHHPTEIEASRNAAKLSTT 155

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH 434
           SGR+I +                  A+   D  I+TD  P  E+         I  EI  
Sbjct: 156 SGRVIGILQPHRFTRVQHFFKDFTSAISKFDYLILTDVYPAGEEVISGCESLDIVREIKS 215

Query: 435 GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
                +   +  +AI   +       DV++  G G
Sbjct: 216 RGFDQVVHASTPDAITDIVASVAQPGDVVIAMGAG 250


>gi|322436407|ref|YP_004218619.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX9]
 gi|321164134|gb|ADW69839.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX9]
          Length = 478

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 145/400 (36%), Gaps = 27/400 (6%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQR 139
            +A  R N  +  V + R   S  A+ L+ +       L V GT GK++  S +  I + 
Sbjct: 75  GNAISRGNVELERVLDERIPFSSMAALLHDEFLVGRESLVVAGTHGKTTTTSMLAWIYET 134

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +     +  P+  I   A++         ++ +A      +G  + +          H  
Sbjct: 135 AAKYDAKFAPSFLIGGVAENF-----GASFMVRATRPFLLEGDEYDTAFFDKGPKFLHYF 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                 A   T++  DH D +    A   A  R F  L+P+    + Y  +    E + +
Sbjct: 190 ----PDAAILTHVEFDHADIYDDLNAVKTAFKR-FVNLIPRRGRLVAYDGNVNVTECVAK 244

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
           A    C V   G   G +  +  + A     + T+  +G+ F +   P+PGE    NA  
Sbjct: 245 A---FCAVERYGLAPGSYWRVTGLTADEGGTRWTLERDGEFFAELKLPMPGEHNALNATA 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           AAGL    G+    + E L     V  R E V     G  +  D+AH   ++   L+ ++
Sbjct: 302 AAGLAAGQGVAVEAIKEALATFRSVKRRLE-VRAEVNGITVIEDFAHHPTAIRETLRALK 360

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIV-----TDDNPRSE--DPEKI 428
              +GR +V           +      +     +AD  ++     ++  P  E  +PE +
Sbjct: 361 ASYAGRRLVAILEPRSNTLRRNVFEEALVDSLLIADQVVIAGVFKSESIPEHERLEPEAV 420

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            A +           +    ++     L   DV+ +   G
Sbjct: 421 AAGLRVRGTPAQVLADAGAIVKVLAPELKSGDVVAILSNG 460


>gi|311103999|ref|YP_003976852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
           xylosoxidans A8]
 gi|310758688|gb|ADP14137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
           xylosoxidans A8]
          Length = 510

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 144/393 (36%), Gaps = 63/393 (16%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A     +    +L VTGT+GK++V +  +Q+ + SGLS    G    IS  A  
Sbjct: 118 RALADLAETREYRP--RLLTVTGTNGKTTVTALTRQLIEASGLSVVAAG---NISPAALA 172

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             +       L +              +E SS  L+      +   AG   N+ +DH+D+
Sbjct: 173 ALMDALDAESLPQ-----------VWVLELSSFQLE--TTHSLMADAGVVLNVTQDHLDW 219

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H + +AY  AK RL    L     AI+  DD Y+ +++   +    R  S G     +  
Sbjct: 220 HGSMEAYAQAKARL----LKMARVAIVNRDDPYTVDMVATLNALNVR--SFGRDVPELVG 273

Query: 280 KKVCAIHNKQQVTISVEGKDFD----------------------------FLFPLPGEFQ 311
                +       ++ E  DFD                                + G   
Sbjct: 274 DMGLELGQGVAWLVACEPNDFDEPAPPVRRKKDAPEPVRAKGRMSRLMPVDALRIRGIHN 333

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NAL A  L   + +    +L  L +    P R  FV T   GG  Y++ +  +N +  
Sbjct: 334 ALNALAALQLARCLDLGWGAMLRALREYAGEPHRAAFVRT--IGGVDYINDSKGTN-VGA 390

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +  +  +  G+ +V+   G  + Q   P++  +      + ++  D P      +I   
Sbjct: 391 TVAALEGL--GQQVVLIAGGQGKGQDFAPLIPGVTQHARAVMLIGQDGP------EIGRV 442

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       +      +A+R A E+    D +++
Sbjct: 443 LASTGVQCVMAETLRDAVRGAAELAQPGDAVLL 475


>gi|146319374|ref|YP_001199086.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis 05ZYH33]
 gi|146321579|ref|YP_001201290.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis 98HAH33]
 gi|253752401|ref|YP_003025542.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis SC84]
 gi|253754227|ref|YP_003027368.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis P1/7]
 gi|253756161|ref|YP_003029301.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis BM407]
 gi|166224741|sp|A4W3F1|MURC_STRS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224743|sp|A4VX47|MURC_STRSY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145690180|gb|ABP90686.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus suis 05ZYH33]
 gi|145692385|gb|ABP92890.1| UDP-N-acetylmuramate-alanine ligase [Streptococcus suis 98HAH33]
 gi|251816690|emb|CAZ52331.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis SC84]
 gi|251818625|emb|CAZ56459.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis BM407]
 gi|251820473|emb|CAR47201.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis P1/7]
 gi|292559004|gb|ADE32005.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis GZ1]
 gi|319758806|gb|ADV70748.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis JS14]
          Length = 443

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 102/348 (29%), Gaps = 42/348 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
           +++   L   +A    N   +   + + +         G+  +    L V G  GK+S  
Sbjct: 59  ITADVELIAGNAFRPDNNVEIAYADAQGYTYKRYHEFLGEFMKGFTSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +SF IG  +   S      +                            
Sbjct: 119 GLLAHVMRNITDTSFLIGDGTGRGSANAQYFVFESDEYERH------------------- 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY  + +  FNA     +++        ++ +D
Sbjct: 160 --------FAPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQVKN---ALFVFGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              + +   A      +   G +         +    +  Q  +    ++  +F  P  G
Sbjct: 209 EQLRRITANAP-----IYYYGLEDNNDFVAYDLKPSTSGSQFKVRHGEEELGEFQIPTFG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NA          G D  LV EHL+    V  RF     N     I  D+AH    
Sbjct: 264 KHNVMNATAVIANLYIAGFDLQLVAEHLKTFGGVKRRFTEKIVND--TVIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   +   R    S  ++ +F                 AL+ AD   +
Sbjct: 322 IIATIDAARQKYPSKELVAIFQPHTFTRTIALLDEFADALNGADAVYL 369


>gi|110834835|ref|YP_693694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m eso-diamino
           [Alcanivorax borkumensis SK2]
 gi|110647946|emb|CAL17422.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m eso-diamino
           [Alcanivorax borkumensis SK2]
          Length = 450

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 93/305 (30%), Gaps = 24/305 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ +S +  I + +GL    +     +      +     +P ++ +
Sbjct: 101 PGRWVLAVAGTHGKTTTSSMLAWILEYAGLKPGYL--IGGVPGNFGVSARLGETPFFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y ++                       +       NL  DH D      A    +  
Sbjct: 159 ADEYDTAFFDKRSKFVHY------------RPRTVILNNLEFDHADIFADLAAI-QTQFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P     I+   +A  +E +++       V   G +    +             T
Sbjct: 206 HLIRTVPSTGRLILPHGEAALEETLEK--GCWSNVERFGKEEALGYRLDQAD---GSSFT 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G+      +   G   V N + A      +G+  A     L +   V  R E  G 
Sbjct: 261 VLESGEPVAQVRWEQTGRHSVNNGMAALLAARHVGVTLADGAAALSEFVGVKRRMELRGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--L 409
              G R+Y D+AH   ++   L  +R       I+                  +A     
Sbjct: 321 VG-GVRVYDDFAHHPTAIATTLDGLRRKVGNGKILAIIEPRSNTMRLGSHKAALAGSTGC 379

Query: 410 ADIAI 414
           AD  I
Sbjct: 380 ADEVI 384


>gi|161486821|ref|NP_722058.2| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus mutans UA159]
          Length = 443

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 91/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V G  GK+S    +  + +    +S+ IG  +                          
Sbjct: 106 LGVAGAHGKTSTTGLLAHVLKNITDTSYLIGDGTGRG---------------------LA 144

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +SQ     S E   H +  H            TN+  DH DY       F A     +++
Sbjct: 145 NSQYFVFESDEYERHFMPYH------PEYSIITNIDFDHPDYFTGVDDVFAAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D Y +++   A      +   G+          +    N     +   
Sbjct: 199 ---KKGLFVYGEDPYLRKLTSSAP-----IYYYGFKDNDDFVAYDIMRSTNGSDFKVRHG 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +   F  P  G   V NA          G++  LV +HL+    V  RF     N   
Sbjct: 251 QNELGSFHVPAFGRHNVLNATAVIANLYIAGVEMDLVRQHLKTFSGVKRRFSEKLIND-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 309 VTIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAQALNEADSVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|297516905|ref|ZP_06935291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 153

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 13/153 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           VTGT+GK++    + Q  Q  G +S  +G    
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGN 146


>gi|304317204|ref|YP_003852349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778706|gb|ADL69265.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 454

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 145/405 (35%), Gaps = 54/405 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ ++VS    +     T      I V+        L            I A+TGT+GK
Sbjct: 68  GAQMVIVSPGIPIDSEIVTKAKVKGIEVIGEVEFAYRL--------SKAPIYAITGTNGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S + +I + SG+ ++  G                         L   + +      
Sbjct: 120 TTTTSLLGEIFKNSGVRTYVAGNIG--------------------YPLVEAAVKAGNDDV 159

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A         +   + +  +  N+  DH++ H+T + Y N K R+FE     E   ++
Sbjct: 160 IVAEISSFQLETIKEFRPVISAIINITPDHLNRHKTLENYINIKGRIFENQSFNE-YTVL 218

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--- 303
             DD     +  RA    C+V     +        V       ++ IS  G+    +   
Sbjct: 219 NYDDKNISSLFDRAK---CKVFPFSMEKILYRGTYVE----NGKIVISSNGEKNTIIDIN 271

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NA+VA+ +    GID  ++   L+    V  R EFV   S  G  Y + 
Sbjct: 272 DIYIPGNHNVENAMVASTMAFLAGIDVNIINTTLKTFKGVEHRIEFV--RSINGVKYYND 329

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  +N  +  +K I  +     I++   G D+              +  + ++       
Sbjct: 330 SKGTNP-DAAIKAIEAMKGP--IILIAGGYDKGVSFDEFTSSFNGRVRKLILL------G 380

Query: 423 EDPEKI-RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  + I ++ + +G          +  +A+  A +M    D +++
Sbjct: 381 ETRDLIYKSAVKNGFSREDITVVNSLDDAVYAAYKMSMPGDNVLL 425


>gi|83746792|ref|ZP_00943840.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia solanacearum UW551]
 gi|83726561|gb|EAP73691.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia solanacearum UW551]
          Length = 501

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 132/411 (32%), Gaps = 40/411 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+  V+ +  S  +       +  +  V             +  +  + +LAV GT GK
Sbjct: 101 GADLYVIGNVISRGNPLMEAILDRNLPYVSGP----QWLGDNVLRQ--KWVLAVAGTHGK 154

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I Q +G     +     +    ++  L+           + L++     + 
Sbjct: 155 TTTTSMLAWILQDAGYDPGFL-----VGGVPRNFGLS-----------ARLTASDFFVIE 198

Query: 187 VEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +         R   +  +       NL  DH D      A       L    +P +   
Sbjct: 199 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRA-VPGQGRV 257

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++   +   K V+ R       V   G   +      +  + +     + ++G+      
Sbjct: 258 LVNGREESLKRVLAR--GCWSEVELFG--AEDGAGWAIANLGDDDSFDVVLDGQVQGRVR 313

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PL G+    NAL A      +G+  A  +E L +   V  R E  GT   G  +Y D+A
Sbjct: 314 WPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-VDGVTVYDDFA 372

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPR 421
           H   ++   +  +R       I+            G        +L+ AD          
Sbjct: 373 HHPTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAASG 432

Query: 422 SE----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    D     A +      F + G  ++A+  A       D ++V   G
Sbjct: 433 RDVLGWDLAGALAPLGEQARAFSDLGALVDAVTAA---ARPGDHVLVMSNG 480


>gi|157092717|gb|ABV22528.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 870

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRFGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +       +   ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMISNALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV +D+     PR    E I   I    P   +    +  +AI   ++M     ++V+
Sbjct: 794 YIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVI 853

Query: 465 A 465
            
Sbjct: 854 L 854


>gi|195953887|ref|YP_002122177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
           sp. Y04AAS1]
 gi|254766052|sp|B4U609|MURD_HYDS0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195933499|gb|ACG58199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 411

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 134/361 (37%), Gaps = 57/361 (15%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R Y    +NI+AVTGT GKS+    +         +SF+ G      +F       
Sbjct: 76  ELAYRFYK--GKNIIAVTGTDGKSTTVHLIHH------FTSFKEG-----GNFGTPFSEI 122

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                    AL   S QG T               LD  +   G F N  +DH+D+H + 
Sbjct: 123 VLDNDKENVALEASSFQGKT---------------LDTFRPNVGVFLNFSKDHLDWHPSL 167

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  +K ++F+    +E   I+ A              +  + +  G  G      KV 
Sbjct: 168 EDYLLSKQKIFKNQT-QEDILILNAQKPVCD------TPSLAKKIFFGENGDL----KVV 216

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 +  + +E      L  L     +YN  VA+ +  ++GI    + ++LE    +P
Sbjct: 217 GSDVYYKDELLIENISHPSLKGL---HNLYNIAVASFVAFSMGISLEEIKKNLETFEALP 273

Query: 344 GRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            R++++G N  G  I  D   T+ N+L   L++ +       I++   G D+      I 
Sbjct: 274 FRYQYLG-NFEGIDICNDSKSTTVNALMSALESTKA-----PILLIAGGIDKGGDFSSIE 327

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                  A            +D   I+ +I H +  ++ + +   A+    E   K D +
Sbjct: 328 AYKDKIKAVFLY-------GKDKNLIKDQIEHFLKVYVLE-DLESALLKVKEQARKGDTI 379

Query: 463 V 463
           +
Sbjct: 380 L 380


>gi|319941793|ref|ZP_08016115.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804726|gb|EFW01593.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
          Length = 508

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 110/306 (35%), Gaps = 28/306 (9%)

Query: 173 ALSYLSSQGV--THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            LS   + G       +E SS  L+      +   + +  N+  DH+D+H + +AY +AK
Sbjct: 176 ELSKAEAAGALPDIWVLELSSFQLE--TTHTLNCTSAALLNITEDHLDWHGSIEAYAHAK 233

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG---CRVLSVGY--QGKFIHLKKVCAI 285
            R+F      ++  ++  +D      +++  +      R  + G     K   L  + A 
Sbjct: 234 GRIFA----PDTVRVVNREDPLVMAELEKVDDREHSAARCFTFGATKPQKEGELGLMMAA 289

Query: 286 HNKQQVTISVEGKDFDFLFPLPG-------EFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           H  Q   + +  +    +  LP             NAL A GL    GI++   +  L  
Sbjct: 290 HASQGYWLGLRDQMEVDVLFLPEFELLIRGRHNAMNALAALGLITGAGIETRPAIGVLRT 349

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R E V T    GR ++D +  +N   +          GR I++   G  + Q  
Sbjct: 350 YRGEPHRVELVRTIE--GRDFIDDSKGTNVGAVAAAVCGLAAQGRRILILMGGDGKGQDF 407

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            P+  ++   +A  A++        D  KIR  +               A     E    
Sbjct: 408 TPLAKELKGRVAFAALI------GRDAAKIREAVSPAGVATETFKTLEAAEDWLWEKSRP 461

Query: 459 QDVLVV 464
            D +++
Sbjct: 462 GDQILL 467


>gi|320175807|gb|EFW50891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella dysenteriae CDC
           74-1112]
          Length = 457

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTSQPGDHILVMSNG 436


>gi|289624980|ref|ZP_06457934.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647038|ref|ZP_06478381.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330868713|gb|EGH03422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 448

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 120/352 (34%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 DGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSALRAPVAEHCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +   +       A+  +  +  + D +++
Sbjct: 376 VLL------GRDAELIAQALGDTVT-LVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|261838027|gb|ACX97793.1| UDP-MurNac-pentapeptide synthetase [Helicobacter pylori 51]
          Length = 493

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 139/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +F   + G+F  YN   A  +   +G+++  +   + + + +  R + +  N + 
Sbjct: 325 GSVWENFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|225871161|ref|YP_002747108.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           equi 4047]
 gi|254766023|sp|C0M809|MURC_STRE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225700565|emb|CAW95064.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           equi 4047]
          Length = 443

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 104/348 (29%), Gaps = 46/348 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +A+   + S    +    L      +FL  F  +         L V G  GK+S  
Sbjct: 65  LIAGNAFREDNNSEVAYAMRHQLPFKRYHEFLGEFMKQF------TSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +S+ IG  +     A D R          +                  
Sbjct: 119 GLLSHVLKHMTATSYLIGDGT--GHGAADARYFVFESDEYERHF--------------MP 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H                 TN+  DH DY       FNA     +++   +    +Y +D
Sbjct: 163 YH-----------PEYSIITNIDFDHPDYFTGLDDVFNAFNDYAKQV---KKALFVYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              +++     ++   +   G++         +    N     +  +G     F  P  G
Sbjct: 209 EELRKI-----SSPAPIYYYGFEDTDDFVAFDITRTTNGSDFKVKHKGHAIGQFHVPAYG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA          G D  LV EHL+    V  RF     N     I  D+AH    
Sbjct: 264 RHNILNATAVIANLFIAGFDMKLVAEHLKSFSGVKRRFTEKVIND--TIIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   L   R    +  II +F                 AL+ AD   +
Sbjct: 322 IIATLDAARQKYPNKEIIAIFQPHTFTRTIALLDDFAHALNEADSVYL 369


>gi|229826930|ref|ZP_04452999.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
 gi|229788548|gb|EEP24662.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
          Length = 276

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 96/287 (33%), Gaps = 22/287 (7%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H+++ +++     AK  +F+ L P     I+  DD     V +          
Sbjct: 2   ITNIGLCHLEFLKSRDGILKAKTEIFDFLKPT-GHIILNVDDDKLVTV-ENVKGIQPMFF 59

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +  +      +            I  E  +F  L P+PG   VYNAL    + +   + 
Sbjct: 60  GIENKNGVWADEIKPEGLKGISCCIHTEKGNFPVLIPIPGHHMVYNALAGTAVGLTYSLS 119

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   +E L  V GRF  + T  +   +   Y     S++  L  +      ++ ++ 
Sbjct: 120 LEEIKAGIESLQPVSGRFHIIDT-GKYTVVDDCYNANPVSMKASLDVLTDALGRKVAILG 178

Query: 389 GCGG--DRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
             G     +      +G  A     D+ I   +  +        A     I  F  K   
Sbjct: 179 DMGELGKEEVEMHREVGVYAVSKNLDLLICMGELSQYMAEAAKHAAPTKPIFHFKTKE-- 236

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            E ++   ++L K D  +V                      D+++E+
Sbjct: 237 -ELLQELPQILQKGDTALV-------------KASHFMGFEDVVKEL 269


>gi|311281223|ref|YP_003943454.1| UDP-N-acetylmuramate [Enterobacter cloacae SCF1]
 gi|308750418|gb|ADO50170.1| UDP-N-acetylmuramate [Enterobacter cloacae SCF1]
          Length = 457

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 118/361 (32%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I    D   K+ +  A         VG QG     KK+    ++ +V + 
Sbjct: 209 -RIVPGQGRIIWPESDINLKQTL--ALGCWSEQELVGEQG-HWQAKKISTDASEWEVWLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  + N L+A      +G+      + L        R E  G  + 
Sbjct: 265 GE-KVGEVKWGLVGEHNMNNGLMAIAAARHVGVQPGDAAQALGSFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L+ +R    G  RII V     +  +          +L  AD
Sbjct: 323 GVAVYDDFAHHPTAILATLQALRGKVGGTARIIAVLEPRSNTMKMGVCKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       ++  +    + T  +M        D ++V   
Sbjct: 383 EVFLLQ-------PQHIPWQVAEVADACVQPAHWSADVDTLADMIVKTAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|307140927|ref|ZP_07500283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|331644982|ref|ZP_08346099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|284924407|emb|CBG37531.1| murein peptide ligase [Escherichia coli 042]
 gi|331035957|gb|EGI08195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|332346312|gb|AEE59646.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMNK88]
          Length = 457

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 116/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+        L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPVDAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 436


>gi|157092726|gb|ABV22534.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 862

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRFGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +       +   ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMISNALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV +D+     PR    E I   I    P   +    +  +AI   ++M     ++V+
Sbjct: 794 YIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVI 853

Query: 465 A 465
            
Sbjct: 854 L 854


>gi|212635040|ref|YP_002311565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           piezotolerans WP3]
 gi|212556524|gb|ACJ28978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Shewanella
           piezotolerans WP3]
          Length = 422

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 156/448 (34%), Gaps = 73/448 (16%)

Query: 27  ERKINEVSSDSRHIQAGW--IFVAIVGNKEDGHLFIPQAIAQG--------AEAIVVSSA 76
           ++ I  +  DSR    G   +  A             + IA G        A  IV+S  
Sbjct: 9   DQGITPLVMDSREQPPGADKLAAAYPDV---------ELIAGGFDCRYLVQATQIVISPG 59

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            S++        +  I V+ +   F    A       P  ++ +TG++GKS+V + V ++
Sbjct: 60  ISVETPEVRAAFDMGIEVIGDVELFARAIA-----NSPARVIGITGSNGKSTVTTLVGEM 114

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +GLS    G             +     +   K L  L          E SS  L+ 
Sbjct: 115 AAAAGLSYTLGGNIG----------IPVLDLLLNPKELYVL----------ELSSFQLE- 153

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +  IA +  N+  DH+D +   ++Y  AK+ L+++        +   +D      
Sbjct: 154 -TTHSLNCIAATCLNISEDHMDRYNDLESYRQAKLNLYDQ----SKSVLFNRED------ 202

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +    N+     S G     +        +  +  ++ +   +      L G     N +
Sbjct: 203 LLTLPNSPMNQNSFGLDAPEVDAWGGAEGNIVRGSSVIMPISE----VALVGSHNHANLI 258

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  L  ++ I    ++E  ++   +  R E V      G  YV+ +  +N +   +  I
Sbjct: 259 AAMALASSVDIGREYLVEVAKQFTGLTHRCEVVA--DIAGVTYVNDSKATN-VGATVAAI 315

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             ++     ++   GGD        +      ++ +  +       +D +KI A +  G 
Sbjct: 316 EGLSEHLGELILIAGGDGKGADFTALATALERVSSVITL------GKDGDKIAA-LKEGS 368

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     EA+  A E+    D++++
Sbjct: 369 QSV---KTMAEAVALANEISTAGDIVIL 393


>gi|157092720|gb|ABV22530.1| truncated cyanophycin synthetase [synthetic construct]
 gi|157092723|gb|ABV22532.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 866

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRFGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +       +   ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMISNALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV +D+     PR    E I   I    P   +    +  +AI   ++M     ++V+
Sbjct: 794 YIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVI 853

Query: 465 A 465
            
Sbjct: 854 L 854


>gi|225574517|ref|ZP_03783127.1| hypothetical protein RUMHYD_02594 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038248|gb|EEG48494.1| hypothetical protein RUMHYD_02594 [Blautia hydrogenotrophica DSM
           10507]
          Length = 451

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 107/295 (36%), Gaps = 28/295 (9%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S +  + VT    E SS  L+   ++       +  N+  DH++ H T + Y   K  + 
Sbjct: 153 SQMKEESVTVA--EISSFQLE--TIETFAPHVSAILNITEDHLNRHHTMEEYIRVKELIT 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +   + Y D    + + K   N   RV+        +            ++ + 
Sbjct: 209 KNQGCDDYCILNYED----EILRKFGENLTPRVIYFS----SVRELDEGIFLRDGRIILR 260

Query: 295 VEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++ K+  F+      + G     NA+ A  +    G+ +  +   +     V  R EFV 
Sbjct: 261 LDKKEIPFMKTQQLRILGRHNHENAMAAIAMAYVAGVSAEEICRSVCNFQAVEHRIEFV- 319

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              + G  Y + +  +N  +  +K I+ +    +++  G G D+       +      + 
Sbjct: 320 -EEKDGVAYYNDSKGTNP-DAAIKGIQAMDRPTLLI--GGGFDKGSEYDEWIQSFDGKVR 375

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + ++       +  EKI+      G    I   N  EA++   +  N  D +++
Sbjct: 376 YLVLI------GQTREKIQEAANRLGFHDCILAENLEEAVKICAKKANPGDAVLL 424


>gi|157092732|gb|ABV22538.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 856

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRFGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +       +   ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMISNALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV +D+     PR    E I   I    P   +    +  +AI   ++M     ++V+
Sbjct: 794 YIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVI 853

Query: 465 A 465
            
Sbjct: 854 L 854


>gi|325578823|ref|ZP_08148870.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159647|gb|EGC71779.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 437

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 132/397 (33%), Gaps = 59/397 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++        +  + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 70  IVISPGLAVKIPEIQTALSAGVEVIGDIELF--------CRAATKPIVGITGSNGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 122 TLVYEMAKAAGIKVGMGGNIG-------------------IPALSLLNED-CDLYVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+    + +K  A +  N+  DH+D +   + Y  AK+R++         A++  +D
Sbjct: 162 SFQLE--TTNSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIY----YNAETAVVNLED 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLP 307
              K       N   +V+S         LK       +  K++V +  +         L 
Sbjct: 216 ---KLTFGEGENQAKKVVSFAENQADYWLKTENGKQYLMAKEEVILPCD------EAILV 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+ I+   +   L +   +  RF+     +  G  +++ +  +N
Sbjct: 267 GRHNYMNILAATALAQAVDINLEAIRIALRQFKGLDHRFQLAYQTN--GVRWINDSKATN 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
               +         G + ++   G  +      +   I            D         
Sbjct: 325 VGSTVAALAGLYVEGTLHLLL-GGDGKGADFSELADLINQPHISTYCFGRDG-------- 375

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++              +AI      L   D++++
Sbjct: 376 --KQLAALSSQSHLFETMQQAISFLRPRLKSGDMVLL 410


>gi|157092735|gb|ABV22540.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 855

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRFGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +       +   ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMISNALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV +D+     PR    E I   I    P   +    +  +AI   ++M     ++V+
Sbjct: 794 YIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVI 853

Query: 465 A 465
            
Sbjct: 854 L 854


>gi|157092729|gb|ABV22536.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 856

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 36/361 (9%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRFGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +       +   ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMISNALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV +D+     PR    E I   I    P   +    +  +AI   ++M     ++V+
Sbjct: 794 YIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVI 853

Query: 465 A 465
            
Sbjct: 854 L 854


>gi|15896442|ref|NP_349791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum ATCC 824]
 gi|30316107|sp|Q97EB9|MURD_CLOAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15026265|gb|AAK81131.1|AE007815_1 UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           acetobutylicum ATCC 824]
          Length = 462

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 125/364 (34%), Gaps = 53/364 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  I  VTG+ GK++  + +  + +  G  ++  G   T                
Sbjct: 112 FIKYCPAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVGGNIGTP--------------- 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   +  +S++    V +E SS  L       +       TNL  +H+D H+  + Y N
Sbjct: 157 -LFSKIKEVSTK--DKVVLELSSFQLMTI---DVSPEVAVVTNLSPNHLDIHKNMEEYIN 210

Query: 229 AKMRLFEE-------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           AK  +F         ++ +++      +     +++K + N   +  +   +        
Sbjct: 211 AKKNIFTHQSKGNVLIINRDNEITNNMESEALGDLLKFSRNEKVKNGAYYNKQDGNIYLF 270

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              I NK  + I  +G D            V N + A    ++  +    +++       
Sbjct: 271 ENKICNKDDIKI--KGMD-----------NVKNFMAAF-CAVSKDVSKESMIKVAMNFAG 316

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R EFV     G + Y D   +S +     + I  + +    V+   GG         
Sbjct: 317 VEHRREFV-RELDGVKYYNDSIASSPT-----RTISGLNAYERPVILIAGGYDKHIPFEP 370

Query: 402 MGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNR-IEAIRTAIEMLNK 458
           + +   D   + I+     N   E  +K+  E    I   I   +   EA+  A ++   
Sbjct: 371 LAEKGYDKIKVLILMGATKNKIKETFDKVICE--KNIKLPIILSDNLEEAVCEAKKVATN 428

Query: 459 QDVL 462
            D++
Sbjct: 429 GDIV 432


>gi|94969647|ref|YP_591695.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551697|gb|ABF41621.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 154/410 (37%), Gaps = 36/410 (8%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSG 125
           AEA +      +   +A  R N  +  V + R   +  A  L+ +  H   ++A+ GT G
Sbjct: 57  AEANLDPRPDLVVVGNAISRGNVELEYVLDRRIPFTSMAELLHREFLHDREVIAIAGTHG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I   +G +   +     I   A++   +           +    +G  + 
Sbjct: 117 KTTTTSMLSWIFHHAGRNPSFL-----IGGIAENFGSSFAVADG-----AEFIIEGDEYD 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +          H        +   T +  DH D ++       A  RL   L+P+    +
Sbjct: 167 TAFFDKGPKFLHYF----PKSLILTAVEFDHADIYKDLDEVKTAFKRLV-NLVPRSGCIL 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
            +       E + +A    C+V   G+  +    +  V     K    +   G+ +  F 
Sbjct: 222 AWDGHPNVDECVTKA---FCKVERYGFTARADWRIVDVEHAPEKTSWRVLRNGEPWAHFE 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           FP+ G++ V NA  AA +     ID+  + E L     V  R E V    +G  I  D+A
Sbjct: 279 FPIAGDYNVLNATAAAAMAAHYAIDTDAIAEALHHFKSVKRRLE-VKAEVKGITIIDDFA 337

Query: 364 HTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV-----T 416
           H   ++   LK +R+  +G R+  V     +  +        + +L +AD  ++     +
Sbjct: 338 HHPTAIAETLKALRSRYAGRRLWAVLEPRSNTLRRNVFQHELVQSLRIADRVVLAATFKS 397

Query: 417 DDNPRSE--DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIE-MLNKQDVL 462
           +  P  E  DP  + AE+   G P  +      + I  AI   L   DV+
Sbjct: 398 EAIPEKERLDPANVVAELNQLGTPAELHAS--ADKIVAAIAPQLAAGDVV 445


>gi|317009250|gb|ADU79830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori India7]
          Length = 493

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 142/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D      +   +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDNNSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++ V        +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDVS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + G+F  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 DSVWESFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYKGRKVIVTPGLVESNTESNEALAQKIDGVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|308063475|gb|ADO05362.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Sat464]
          Length = 493

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSDI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSAEKIKPYAPKDSLLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   + G+F  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 GSVWESFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNIESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKVQLENILQATTI--QGDLILFA 486


>gi|256821827|ref|YP_003145790.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
 gi|256795366|gb|ACV26022.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
          Length = 451

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 106/306 (34%), Gaps = 24/306 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H + +LA  GT GK++ AS +  I Q + L    +     +      +   T SP ++ +
Sbjct: 101 HDKWVLAAAGTHGKTTTASMLAWILQYANLEPGFL--IGGVPENFGLSARVTESPFFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y ++                       +       NL  DH D     +A    +  
Sbjct: 159 ADEYDTAFFDKRSKFVHY------------RPRTLIMNNLEYDHADIFPNLEAI-KTQFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               ++P     I   DDA  + V++R   +   ++     G     +      +     
Sbjct: 206 HLLRIVPGNGLVIYPKDDANLQNVVERGLWSDKELI-----GDEHGWQYKLLEEDGSHFE 260

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G K  +  +PL G   V NAL A       G+ ++   + L +   V  R E  G 
Sbjct: 261 VLFAGQKQGEVNWPLIGLHNVNNALAAIAAARHAGVPASHCCDALAEFKNVKRRMELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
            S G ++Y D+AH   +++  L   R     + ++            G        +L  
Sbjct: 321 AS-GVKVYDDFAHHPTAVKTTLDGFRAKVGEQRVIAIVDLRSATMRSGIHKDTLLASLKG 379

Query: 410 ADIAIV 415
           AD  I+
Sbjct: 380 ADCVII 385


>gi|261345646|ref|ZP_05973290.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rustigianii DSM 4541]
 gi|282566128|gb|EFB71663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rustigianii DSM 4541]
          Length = 441

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 148/398 (37%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L      + +N  I +V +   F          +    I+A+TG++GKS
Sbjct: 71  ADLIVASPGIALATKQLQLAANKGIEIVGDIELF--------CREVDAPIVAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G+S   +G    I                   ALS L +QG +   +
Sbjct: 123 TVTSLVGEMAKAAGIS---VGVGGNIG----------------IPALSLL-NQGHSLYVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    + Y  AK+R+++         I+
Sbjct: 163 ELSSFQLE--TTSSLQAAAATVLNISEDHMDRYPLGLEQYRAAKLRIYDN----AQHCIV 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A D  +     R +       S G      +      +   +  T+    +       L
Sbjct: 217 NAQDVLTLPTDHRLNQCT----SFGLNNGDYYFDTQKRVLIAKGETVLDASE-----MHL 267

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+    NAL A  L   +GI     ++ L++   +  RF+ V  N+    I    A   
Sbjct: 268 TGQHNYMNALAALALADTVGIPREASIKVLKEYAGLVHRFQLVLFNNGVRWINDSKATNV 327

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            S E  L  +     G I ++   G  +     P+   I+ D   +     D        
Sbjct: 328 GSTEAALNGL--HVDGTIYLLL-GGDGKSADFSPLKNYISADNYRLYCFGRD-------G 377

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K  AE+       +      +++R    +L   D++++
Sbjct: 378 KQLAELAP--EKSVLTETMEQSLRQIAPLLKTGDMVLL 413


>gi|327194624|gb|EGE61474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CNPAF512]
          Length = 470

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 110/290 (37%), Gaps = 35/290 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++  +     + +V +   F+     R         +A+TGT+GKS+  + +  I
Sbjct: 79  HPKPHWTVDLAHAAGVDIVGDVELFVRE---RRAHAPDCPFIAITGTNGKSTTTALIAHI 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G  +   G   T                     L+    +   +  VE SS+ +D 
Sbjct: 136 LKSAGYDTQLGGNIGT-------------------AVLTLDPPKPERYYVVECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   NL  DH+D H T Q Y + K RL          A++  DD++S  +
Sbjct: 177 A--PTLNPSAGILLNLTPDHLDRHGTMQHYADVKERLVAG----SDVAVVGIDDSHSALI 230

Query: 257 MKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             R   AG +V+ +  +      I+ +    +       +     D D +  L G     
Sbjct: 231 ADRIQRAGVKVVRISRRNVVADGIYAEGTKLVQAAGGAML--PFADLDGIQTLRGIHNAQ 288

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           NA  A   C+A+G+ +  +   L     +  R + VG   RG  ++V+ +
Sbjct: 289 NAAAAIAACLAVGVSADDIRAGLASFPGLKHRMQPVG--RRGRVVFVNDS 336


>gi|116513831|ref|YP_812737.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275399|sp|Q04B73|MURD_LACDB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116093146|gb|ABJ58299.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 460

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 127/355 (35%), Gaps = 44/355 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQI----CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     QQI     Q+ G  ++ +G        ++           L
Sbjct: 113 SPYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S     GVT +                +  I   + N+   H+DYH+T   Y +AK
Sbjct: 171 VVEMSSFQLMGVTDIE-------------PKVAAIVDIYNNV---HLDYHKTFDNYVDAK 214

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           +     +   +  +  +  +   K+++ R   A   ++L+            V   +  Q
Sbjct: 215 L----NVGRFQKTSDYFLANFDQKDILAREEKATKAKILTFSEN------DPVADFYIGQ 264

Query: 290 QVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +  E K        LPG   + N+LVA G+   +G     +   L        R ++
Sbjct: 265 DYLMHGEEKMMKIADIKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQY 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T   G ++Y D   T+  +E     I++       V+   G DR      ++      
Sbjct: 325 VTT-LDGVKVYNDSKSTN--IEAATVAIQSFKQPE--VLLAGGLDRGFVFDSLVD--LFK 377

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               AIVT    R    +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 378 KHVKAIVTYGETRYLLADAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|157803837|ref|YP_001492386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
 gi|157785100|gb|ABV73601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
          Length = 455

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 108/319 (33%), Gaps = 41/319 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I +  +                  N +AV GT+GKS+  
Sbjct: 67  IVLSPGVPLTHEIVRIAHHFNISITSDIDLL-------FEKSRNLNFIAVIGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G     +  A++++                         +E S
Sbjct: 120 ALISHILNSNGLDYPVAGNIGVPALKAKNSK---------------------DGYVIELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D H+    Y  AK ++F   + K S A+I  D+
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHKDMNGYIKAKSKIF-NRMDKNSYAVINIDN 215

Query: 251 AYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            Y +++ MK       +++             V                   F   L G 
Sbjct: 216 DYCRKIFMKLQQEQRIKLIPFSVTKILEKGISVVNNIINYSF-FGNSNFKLPFNKNLQGI 274

Query: 310 FQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
               N   +  +   +G++ +   +E +     +P R +++G+ +     + + +  +N+
Sbjct: 275 HNCENIAASYAVAKIMGLEESTKIIEAISSFQSLPHRMQYIGSINNIS--FYNDSKATNA 332

Query: 369 LEM-----ILKNIRTITSG 382
           +        L NI  +  G
Sbjct: 333 ISALQSIKALDNIYWLAGG 351


>gi|225874901|ref|YP_002756360.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793781|gb|ACO33871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 495

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 128/369 (34%), Gaps = 39/369 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V+GT GK++  S +  I + +        P+  I   A++         +  K     
Sbjct: 110 LVVSGTHGKTTTTSMLAWIYEVASRRHAGFTPSFLIGGVAENF-----GTSFQYKPGKAF 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  + +          H        A   T++  DH D +    A   A  RL   L
Sbjct: 165 IIEGDEYDTAFFDKGPKFMHYF----PDALILTHVEFDHADIYLDLDAVKTAFRRLV-NL 219

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P+    + +    + ++ +++A               +  +  V      Q   +    
Sbjct: 220 VPRRGRIVAFDASPHLRDCVQKAL-CPVEFYGARPDSAWQVVDLVQQGGIMQWKVLRYGA 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +F   L GE   +NA  AA L +  G+  A + E L     V  R E V     G  
Sbjct: 279 PWAEFRMQLAGEHNAFNATAAAALAVGQGVPLAAITEALASFRSVKRRLE-VRAQVHGVT 337

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGG---DRDQGKRPIMGKIALDLADIA 413
           I  D+AH   ++   L+ +R    G R+  V         R+  +  ++  +AL  AD  
Sbjct: 338 IIDDFAHHPTAIRETLRALRGAYPGARLWAVLEPRSNTLRRNVFEHELVESLAL--ADQ- 394

Query: 414 IVTDDNPRSED--------PEKIRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           IV     +SE         PE++ A +       H IPG      RI A           
Sbjct: 395 IVMAQVFKSEAVPEAERLQPERVIAALEQQGKPAHLIPGVAGIVARIAA------EARPG 448

Query: 460 DVLVVAGKG 468
           DV+ +   G
Sbjct: 449 DVVAILSNG 457


>gi|32265627|ref|NP_859659.1| hypothetical protein HH0128 [Helicobacter hepaticus ATCC 51449]
 gi|32261675|gb|AAP76725.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 493

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 109/302 (36%), Gaps = 24/302 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ VTG+ GK+S+ +F+ QI +            +T +    D          +     Y
Sbjct: 168 IIGVTGSYGKTSMKNFLAQILKEKYRVYATPRSVNTHTGIVADINQNLDYITEI-----Y 222

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G       A            +         +G  H++Y ++ +     K  L + 
Sbjct: 223 IIEAGARLKGDIALISQ-------FLNPHYAVIGEVGEQHLEYFKSLENIVETKFELLQS 275

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   A ++ D+  S  +           ++   Q    +++ + A  +     + ++
Sbjct: 276 --SRLKKAFVFKDNPKSPHIEPN--------ITKKIQYFPENVRNIDANLDGTSFELFIK 325

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+   F   + G F V N   A  + + +G+    + + ++++  +P R   + T+ +  
Sbjct: 326 GEWHHFETMVLGVFNVVNLSAAIYMGVELGLQVEEIQKAVKRIEPIPHRLNKIQTHQK-- 383

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I  D  + +         + ++  GR I+V     +  +     + +    + DI I+T
Sbjct: 384 LIIDDGFNGNLKGMKEAIRLCSLYQGRKIIVTPGIVESTKEANIELAQAIDKVFDIVIIT 443

Query: 417 DD 418
            +
Sbjct: 444 GE 445


>gi|323486714|ref|ZP_08092035.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323692147|ref|ZP_08106390.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
 gi|323400095|gb|EGA92472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323503721|gb|EGB19540.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
          Length = 448

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 20/292 (6%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L ++  +    E SS  L+   +   +    +  N+  DH+D H+T + Y   K  + 
Sbjct: 148 HALETEESSVTVAEVSSFQLE--TIMDFRPNVSAILNITPDHLDRHKTMECYTQVKESIT 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTI 293
           +         ++  DD   +E  +          S     K  +L+    ++N   +VT 
Sbjct: 206 KNQ-KDGDTCVLNYDDTVLREFGETLKINVVYFSSREKLKKGYYLEDGKIVYNDGSKVTE 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            V+  +      L G     N + A  + + + +    + E + K   V  R EFV    
Sbjct: 265 IVDISE----LKLLGRHNHENVMAAVAISMNMDVPLEKIQEVIRKFEAVEHRIEFVTE-- 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           R G  Y + +  +N  +  ++ I+ +    I++  G     +  +        +    + 
Sbjct: 319 RFGVKYYNDSKGTNP-DAAMQAIKAMPGPTILIAGGYDKHSEFDEWIESFDGKVRYLVLI 377

Query: 414 IVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    +  +KI      HG    +   + +EA++      N  D +++
Sbjct: 378 --------GQTRDKIAECAKRHGFTDIMYAEDLLEAVQVCASYANPGDNVLL 421


>gi|94312061|ref|YP_585271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cupriavidus
           metallidurans CH34]
 gi|118595679|sp|Q1LIM4|MURD_RALME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|93355913|gb|ABF10002.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Cupriavidus
           metallidurans CH34]
          Length = 504

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 100/312 (32%), Gaps = 48/312 (15%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L+      +   A +  N+ +DH+D+H + +AY  AK R+F     K  
Sbjct: 176 DVWVLELSSFQLE--YTFSLAPHAATVLNVTQDHLDWHGSMEAYAAAKARIF-GPAEKGC 232

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------------------------G 274
             ++   D  +  + +R       +++ G                               
Sbjct: 233 LQVLNRQDPLTMNMARRGTT----LVTFGTDLPETPGSYGVLREGGMPWLVLAEPDTEAD 288

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALV 332
                ++           + V  K       L         NA+ A  LC AI +    +
Sbjct: 289 AEQKPRRRKKDDVAADAVVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDLPLNAL 348

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           L  L +    P R E+V T                +    L  +        +V+   G 
Sbjct: 349 LHGLREYRGEPHRVEWVATIDEVEYFDDSKGTNVGATVAALSGLDKH-----VVLIAGGE 403

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
            + Q   P++  +A     + ++       +D   +R  +       I+ G+  EA+  +
Sbjct: 404 GKGQDFSPLVAPVAQYARAVVLI------GKDAGALREALGATGKPLIDAGSLEEAVEKS 457

Query: 453 IEMLNKQDVLVV 464
             +    DV+++
Sbjct: 458 ASLAEAGDVVLL 469


>gi|209921729|ref|YP_002295813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE11]
 gi|209914988|dbj|BAG80062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE11]
          Length = 457

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +      +  P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPSDHILVMSNG 436


>gi|293374534|ref|ZP_06620856.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sanguinis
           PC909]
 gi|292646913|gb|EFF64901.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sanguinis
           PC909]
          Length = 437

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 13/218 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+  DH DY        +A   +F     K   A    DD   K++      
Sbjct: 163 RPDYAIITNIEHDHPDYFTDIDDVLDA-FNVFSNQTKKMVIA--CGDDPEVKKL-----Q 214

Query: 263 AGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAG 320
               +++ G +       K +          + + G+ +  F     G+  V N+L    
Sbjct: 215 TSTNMMTYGLESHNNVVAKNILKTAEGTAFDVFINGEFYHTFNTLFFGDHMVLNSLAVIT 274

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
           +C   G++++++ + L     V  RF     +++   I  DYAH    +   LK +R   
Sbjct: 275 VCYLEGLEASIIDKDLRLFEGVKRRFAQKKHHTQ--IIIDDYAHHPTEIAATLKAVRQKF 332

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
               ++ VF                 +L+LAD   +TD
Sbjct: 333 PDRNLVAVFQPHTFTRTAAFIDEFAQSLNLADHIYLTD 370


>gi|296121825|ref|YP_003629603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296014165|gb|ADG67404.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 498

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 145/453 (32%), Gaps = 58/453 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH        + A+ IV + A         +  +  I +    + FL         + P 
Sbjct: 81  GHD--DDDFRK-ADLIVANPAVRPDHRLLKLARDGGIPITTEVQLFLE--------RCPA 129

Query: 116 NILAVTGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            + AVTG++GKS+  + + +IC+ +    GL    +G    I     D      S   + 
Sbjct: 130 PVAAVTGSNGKSTTTAMLHRICEMASGSPGLRRAWLG--GNIGVSLLDQLPAITSDDLV- 186

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L               TN   +H+D+H     Y +AK 
Sbjct: 187 --------------VMELSSFQLYWLNQIEWSPSIAIVTNFSANHLDWHDGLDDYRSAKQ 232

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQ 289
            +F     +   A+I  DD    +    A   G +  S       K+    +        
Sbjct: 233 TMFRWQ-NESDVAVINLDDPDVCQWPGPALRLGFQTGSNCSDVTTKYGVFSESEKEGCLP 291

Query: 290 QVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              + +   +          + GE  + NA+ A      + I   ++   L     +P R
Sbjct: 292 SQILRLPDAEIRLAASSWLRVKGEHNLQNAMAAIAAASVMDIPMEVIETALRSYQALPHR 351

Query: 346 FEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            EFVG  + G   Y D  A T  S  + LK           V+   GG         M K
Sbjct: 352 LEFVGACA-GREFYNDSLATTPESAILGLKAFSQ------PVILLAGGYDKGVDLSSMSK 404

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +      + ++       +    I  +I       G P  I   +  +A   A E     
Sbjct: 405 VISKACRVVVLM-----GQTAPAIHEQIEQYRPSGGGPEVIFASSPHDAFTKAWENSQPG 459

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +V++++  G  +     N   +       + E+
Sbjct: 460 EVMLLS-PGCASYDWFVNFRDRGEQFRQFVIEL 491


>gi|269118797|ref|YP_003306974.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612675|gb|ACZ07043.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 445

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 132/361 (36%), Gaps = 44/361 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPENILAVTGTSGK 126
           I+          S  I  +  +L   ++ +   +     A R   K    I+++TGT+GK
Sbjct: 44  IIDEQKIEFIVKSPGIPWDAELLEKADSLRISVISEIDLAYRYMDK-KTKIISITGTNGK 102

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV--TH 184
           ++ A+ + ++ + +G  +   G                        + + L S G    +
Sbjct: 103 TTTATKIYELLKEAGFDAELAGNAG--------------------FSFAKLVSDGKEPDY 142

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SS+ L+      +        NL  DH+  + +   Y+  K  +F+    +   A
Sbjct: 143 VVLELSSYQLEND--PEVHSHIAGIINLTPDHLTRYNSLDDYYKTKFNIFDHQ-NENDYA 199

Query: 245 IIYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +I  DD     ++    +        R+   G +   +  K            +    K 
Sbjct: 200 LINLDDKEILRIISENKDIDDKIKAKRIFLSGEKKADVFQKDGMINVTDHNSQLIPLMKT 259

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G+  + N L    + + + +D  ++   L     +  R E      +G  ++
Sbjct: 260 SE--LSLKGKHNLENILFIISVGMILNVDIEVMKSFLSSTKPLEHRLENFFE--KGKTVF 315

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV--TD 417
           ++ +  +NS E  +K I     G+  V+   G D+    + ++ KIA  +  + ++  T 
Sbjct: 316 INDSKGTNS-ESTIKAIEAF--GKSTVLICGGYDKQASNKELIDKIAEKVEFVYLIGQTS 372

Query: 418 D 418
           D
Sbjct: 373 D 373


>gi|50122739|ref|YP_051906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium atrosepticum SCRI1043]
 gi|60390382|sp|Q6D0I1|MURD_ERWCT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49613265|emb|CAG76716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 438

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 139/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALATPILCDAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +                      L         +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLPA--------------------LQLLEHPAQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH + +    Q Y  AK+ ++E         ++
Sbjct: 158 ELSSFQLE--TTTSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLHIYEH----ADLCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R  S G      HL +      + +  + V+G+        
Sbjct: 212 NADDALTMPV----RGADARCRSFGVDVGDYHLNR-----QQGETWLRVDGERVLNTREI 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+ I  A  L  L     +P RF+     +    I    A 
Sbjct: 263 KLVGQHNYTNALAALALADAVKIPRASALTALTSFTGLPHRFQMAFERNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P++  +  +   +     D    + 
Sbjct: 323 NVGSTEAALSGLA--VDGTLHLLL-GGDGKSADFSPLVPYLQGERIRLYCFGRD---GQQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     +A+R   E +   D++++
Sbjct: 377 LAALRPEIAE------QTETMEQAMRVIAERIRPGDMVLL 410


>gi|313143839|ref|ZP_07806032.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313128870|gb|EFR46487.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818]
          Length = 490

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 121/309 (39%), Gaps = 29/309 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ VTG+ GK+S+ +F+ QI +            +T +    D          +    + 
Sbjct: 165 IIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGIVADINNNLDYTTEIYITEAG 224

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +G   +  E             I         +G  H++Y ++ +     K  L + 
Sbjct: 225 ARLKGDIALISE------------FINPHYAVIGEVGEQHLEYFKSLENIVETKFELLQS 272

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   A ++ D+   + +     NA  + ++   +     ++ V A        + ++
Sbjct: 273 --KRLKKAFVFKDNLKPQNL----DNALAKKITYFPEN----VRNVEANLEGTSFDLFIK 322

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +   F   + G+F V N   A  + + +G+    + + ++++  +P R   + TN +  
Sbjct: 323 NEWHRFDTMVLGQFNVVNLSAAIYMGVELGLRVEEIQKAVKRIEPIPHRLNKIQTNQK-- 380

Query: 357 RIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + +D     N L+ + + IR  ++  GR I+V     +  +     + K   ++ DIAI
Sbjct: 381 -LIIDDGFNGN-LKGMKEAIRLSSLYEGRKIIVTPGIVESTKEANIELAKAIDEVFDIAI 438

Query: 415 VTDD-NPRS 422
           +T + N R+
Sbjct: 439 ITGELNART 447


>gi|311693507|gb|ADP96380.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine bacterium HP15]
          Length = 464

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 100/306 (32%), Gaps = 24/306 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++  S +  I  ++G     +     +    +D  ++           
Sbjct: 103 RWVMAVAGTHGKTTTTSMLLWILDQAGFEPGYL-----VGGVPRDFPVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L +     +  +         R   +  +       NL  DH D  +  +A       
Sbjct: 147 ARLGNSDFFVIEADEYDSAFFDKRSKFVHYRPHTLILNNLEFDHADIFENVEAIERQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-- 290
           L    +P +   I  A D +    +     +  +  ++G +   +   +   +       
Sbjct: 207 LV-RTVPSQGLIIRPAVDGHLDNALALGCWSPVQDTAIGSETPRMSDWRAELLSEDGSRF 265

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + I  E       +   G   V NAL A      +G+     +  L +   V  R E + 
Sbjct: 266 LVIHHEQPVATLKWDQTGLHNVRNALSAIAAARHVGVTPDHAVAALCRFSGVKRRMELL- 324

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALD 408
            +  G R+Y D+AH   ++   L+ +R       I+            G        + +
Sbjct: 325 ADIDGVRVYDDFAHHPTAIATTLEGLRNQVGDEPILALIEPRSNTMKQGVHQQTLLPSAE 384

Query: 409 LADIAI 414
           +AD  +
Sbjct: 385 IADRVL 390


>gi|217033769|ref|ZP_03439195.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10]
 gi|216943818|gb|EEC23258.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10]
          Length = 493

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +F   + G+F  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 GSVWENFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|119383341|ref|YP_914397.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
 gi|158512585|sp|A1AZK7|MURD_PARDP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119373108|gb|ABL68701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
          Length = 466

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 107/318 (33%), Gaps = 45/318 (14%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120
           G  A++ S      Y              + V ++   F   FA+  + +      ++AV
Sbjct: 66  GISALIASPGIPHLYPKPHPVIARAYALGVPVDNDIGLFFRSFATAEWERFDTTPRVIAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+  + +  I + +G  +   G   T                     LS   + 
Sbjct: 126 TGSNGKSTTTALIHHILKETGRPTQIGGNIGT-------------------GVLSLDPAH 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +E SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 167 DGEVVVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKR-----AHNAGCRVLS------VGYQGKFIHLKKVCAIHNKQ 289
            +   +  D+   + +  +     A +   RV S       G+               +Q
Sbjct: 225 RAVIGV--DEVEGRYLAGQLGMGAADDRVIRVSSGQKLEGFGWSVFARKGYLAEYRKGRQ 282

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +I + G     +  LPG     NA  A     A+GI    +         +P R + V
Sbjct: 283 VASIDLRG-----IQGLPGAHNHQNACAAYAAARAVGIAPREIERAFHSFQGLPHRSQTV 337

Query: 350 GTNSRGGRIYVDYAHTSN 367
                   +    A   +
Sbjct: 338 AEIGGVAWVNDSKATNVD 355


>gi|330811581|ref|YP_004356043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379689|gb|AEA71039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 448

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 121/350 (34%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A++G++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APIIAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDHLGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     +    DA ++ ++           S G          +   + ++ +   
Sbjct: 207 RG----ARQVVFNRQDALTRPLLGEGMPCW----SFGLGVPDFKGFGLREENGEKYLAFE 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L     +  R ++V     
Sbjct: 259 FQNLMPVRELKIRGAHNQANALAALALGHAVGLPFDAMLSALRTFAGLEHRCQWVRDLDG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    +    ++ +     G+++++   G  +    + +   +A +   + +
Sbjct: 319 VAWYNDSKATNVGAALAAIEGLGADIEGKLVLI-AGGDGKGADFKDLRDPVAANCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D E I   +   +P  +  G+  EA++    + +  D +++
Sbjct: 378 M------GRDRELIAQALGDAVP-LVRVGSLDEAVQQCRALAHPGDAVLL 420


>gi|218661509|ref|ZP_03517439.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli IE4771]
          Length = 256

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 82/238 (34%), Gaps = 18/238 (7%)

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD--- 301
           +  D    + ++ R  +   ++++ G      +  K V     +    + +  +      
Sbjct: 1   MCLDHPEVQSLVGRIEDR--KIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVT 58

Query: 302 ----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                + P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +
Sbjct: 59  ELKGLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQ 117

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I+ DY H    ++ +L+  R    GRII V                    + AD  ++  
Sbjct: 118 IFDDYGHHPVEIKAVLRAAREACKGRIIAVHQPHRYSRLASLFEEFAACFNDADSILLAP 177

Query: 418 DNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
                ED  +      + + I  G        +  E +     E+    D +V+ G G
Sbjct: 178 VYAAGEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPEMVAEVAKPGDFVVLLGAG 235


>gi|256842884|ref|ZP_05548372.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614304|gb|EEU19505.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus 125-2-CHN]
          Length = 459

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 117/353 (33%), Gaps = 41/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I     Q+SG  ++ +G      S              L
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATK---DDIL 169

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S     GVT +                +  I   + N+   H+DYH+T + Y NAK
Sbjct: 170 VVEISSFQLLGVTDID-------------PKVAAIVDIYNNV---HLDYHKTFENYVNAK 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +             I   D        K    A  +  S         +         ++
Sbjct: 214 LN-VTRTQNSNDYFIANYDQKDILAKEKEVSPAKMQTFSETDHNADYFIGDEYLESQNEK 272

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +    +         LPG   + N+LVA  +   +G D+  +   L        R ++V 
Sbjct: 273 IMKISD-------IKLPGIHNLQNSLVAIAISKIMGADNDDIAAVLSTFTGAKHRLQYVT 325

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++Y D   T+  +E     I +       V+   G DR      ++      + 
Sbjct: 326 T-LDGCKVYNDSKSTN--IEAATVAIPSFKQPE--VLIAGGLDRGFTFDDLVPLFKKHVK 380

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I +  +      D  +       GI   +      EA+  A E++   DVL+
Sbjct: 381 SIVLYGETRYLLADAAR-----KAGIKDIVIVNTLQEAVPRAWELVEPGDVLL 428


>gi|256850929|ref|ZP_05556318.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661143|ref|ZP_05862057.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 115-3-CHN]
 gi|282934158|ref|ZP_06339436.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|297205809|ref|ZP_06923204.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii JV-V16]
 gi|256615991|gb|EEU21179.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548080|gb|EEX24056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 115-3-CHN]
 gi|281301772|gb|EFA94038.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|297148935|gb|EFH29233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii JV-V16]
          Length = 456

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 118/354 (33%), Gaps = 42/354 (11%)

Query: 115 ENILAVTGTSGKSSV----ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     +  +     +SG  ++ +G      S               
Sbjct: 113 APFVCVTGSNGKTTTVMLTSEIIDHHLAKSGHHAYAVGNIGVPISEVVQKATKD------ 166

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                         + VE SS  L    +  IK    +  ++   H+DYH+T + Y  AK
Sbjct: 167 ------------DVLVVEISSFQLL--GVTDIKPKVAAIVDIYPTHLDYHKTMENYIAAK 212

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +         +   I   D        +    A  +  S+        +         ++
Sbjct: 213 LN-VTRFQTCDEYFIANFDQKEILSKEEATTKAKIQTFSMNDHSASYFVGDEYLESQSEK 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +    +         LPG   + N++VA  +   +G +++ +   L        R ++V 
Sbjct: 272 IMKISD-------IKLPGRHNLQNSMVAIAISKLMGAENSDIQAVLSTFAGARHRLQYVT 324

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T     ++Y D   T+  +E     I+  +     V+ G G DR      ++  +   + 
Sbjct: 325 T-INDVKVYNDSKSTN--IEAATVAIKAFSEPE--VLIGGGLDRGFTFDSLVPLLKKHVK 379

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  +      D  +       GI          EA+  A E+    DVL++
Sbjct: 380 AVVLYGETRYLLADAAR-----KAGIKEIKIVNTLKEAVPVAYELTKPGDVLLL 428


>gi|107021687|ref|YP_620014.1| UDP-N-acetylmuramate [Burkholderia cenocepacia AU 1054]
 gi|116688633|ref|YP_834256.1| UDP-N-acetylmuramate [Burkholderia cenocepacia HI2424]
 gi|105891876|gb|ABF75041.1| UDP-N-acetylmuramate [Burkholderia cenocepacia AU 1054]
 gi|116646722|gb|ABK07363.1| UDP-N-acetylmuramate [Burkholderia cenocepacia HI2424]
          Length = 461

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 118/363 (32%), Gaps = 34/363 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     +      +   T S  ++ +A  Y
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL--IGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++                       +L      NL  DH D      A    +      
Sbjct: 163 DTAFFDKRSKFVHY------------RLRTAVLNNLEFDHADIFPDLAAI-ETQFHHLVR 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SV 295
            +P     +        + V+  A      V   G  G +  L     +   ++  + S 
Sbjct: 210 TVPGVGRIVTNGRSDALERVL--ARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSH 267

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+  +  + + G+    NAL A      +G+  A   E L     V  R E  G +  G
Sbjct: 268 AGRVGEVAWQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEVRG-SVDG 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
             +Y D+AH   +++  +  +R         I+              +  ++   LAD  
Sbjct: 327 VTVYDDFAHHPTAIDTTIAGLRARIGRQNARILAVLEPRSNTMKLGVMKSQLPASLADAD 386

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVVA 465
            +     P   D     A   +        G+R  A       ++  +E     D ++V 
Sbjct: 387 LVFGYGAPTGRD-----ALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLVM 441

Query: 466 GKG 468
             G
Sbjct: 442 SNG 444


>gi|325841180|ref|ZP_08167305.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sp. HGF1]
 gi|325490037|gb|EGC92383.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sp. HGF1]
          Length = 437

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 13/218 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+  DH DY        +A   +F     K   A    DD   K++      
Sbjct: 163 RPDYAIITNIEHDHPDYFTDIDDVLDA-FNVFSNQTKKMVIA--CGDDPEVKKL-----Q 214

Query: 263 AGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAG 320
               +++ G +       K +          + + G+ +  F     G+  V N+L    
Sbjct: 215 TSTNMMTYGLESHNNVVAKNILKTAEGTAFDVFINGEFYHTFNTLFFGDHMVLNSLAVIT 274

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
           +C   G++++++ + L     V  RF     +++   I  DYAH    +   LK +R   
Sbjct: 275 VCYLEGLEASIIDKDLRLFEGVKRRFAQKKHHTQ--IIIDDYAHHPTEIAATLKAVRQKF 332

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
               ++ VF                 +L+LAD   +TD
Sbjct: 333 PDRDLVAVFQPHTFTRTAAFIDEFAQSLNLADHIYLTD 370


>gi|297539594|ref|YP_003675363.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
 gi|297258941|gb|ADI30786.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
          Length = 452

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 155/424 (36%), Gaps = 50/424 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV S   +L +          + V  +   F        Y      ++A+TG +GK++V 
Sbjct: 73  IVASPGVALSEPEIQAAVQRGVSVAGDVELFAQ------YRPTSAKVIAITGANGKTTVT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V +IC+ +GL +   G                         L  L  +      +E S
Sbjct: 127 TLVGEICKAAGLKTIVAGNIGL-------------------PVLDALMMETPDVYVLELS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +++ A +  NL  DH+D + + Q Y  AK R+F          ++  DD
Sbjct: 168 SFQLE--TTSNLQIDAATMLNLSEDHMDRYASFQDYAIAKARIF----YNAKLQVLNRDD 221

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPG 308
           A+S  + +         ++ G                     +    K+   L    + G
Sbjct: 222 AWSMMMAR----PKLAQVTFGLD-DDGEETSYGLKQVDGDTWLCEGDKELINLQDLKIVG 276

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NAL A  LC  IG+D A +++ L     +P R E+V   +     Y D +  +N 
Sbjct: 277 LHNAANALAAVALCRGIGVDYAHIIQTLYNFKGLPHRVEWVA--NIDDVDYYDDSKGTN- 333

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +      +  +     +V+   G  + Q   P+   +A + + + ++  D P  E     
Sbjct: 334 VGATCAALTGLAQK--VVLIAGGDGKGQDFTPLAAAVAENASAVVLIGRDAPLIE----- 386

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            A +   IP + +  +  EA+  A ++    + ++++     +  +  N   +  V    
Sbjct: 387 AALLPTNIPLY-QAADLPEAVNIAKKLAKADEAVLLS-PACASFDMFKNYVHRAEVFVAA 444

Query: 489 IREI 492
           ++ +
Sbjct: 445 VKRL 448


>gi|262341149|ref|YP_003284004.1| UDP-N-acetylmuramate-L-alanine ligase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272486|gb|ACY40394.1| UDP-N-acetylmuramate-L-alanine ligase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 456

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 129/368 (35%), Gaps = 40/368 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  +A+ GT GK++  + +  I   +G     I  T+ +   +++ +             
Sbjct: 111 QICIAIGGTHGKTTTCTLLGHILYSAG-----ISVTAFLGGISENYK------------- 152

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S +   G     VEA     D+  L  +       T+  +DH+D +  ++    A +   
Sbjct: 153 SNIILNGTKIFLVEADEF--DRSFLY-LSPNIACVTSFDQDHVDTYPKKETLKKAYIAFL 209

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +        +  ++++         NA    +    + +  +   +    N+      
Sbjct: 210 NRIKKPYKKIFLCKEESFP------LKNAIYYSV---IKKESYYSNHLSIKGNEWYFDFH 260

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              + +     P+PG   + N   A  +   + I+   V + L     +  R+     + 
Sbjct: 261 TPTETWKSLPLPIPGIHNLKNVTAALSISDYLKINQEKVRKALFLFQGIKRRYSIHYLSK 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADI 412
           +   I  DYAH    +  ++  ++     + I+ +F                 +L+  DI
Sbjct: 321 KKIYI-DDYAHHPTEINALIHTVKECFPNKKILGIFQPHLFSRTKFFEESFAKSLEHLDI 379

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGK 467
            I+ D  P  E P K      + +   I+  ++ + I T  ++L K      D+++  G 
Sbjct: 380 LILLDIYPARELPMKGINS--NNLLEKIKMSSKNKEISTLSKVLEKIKEKHFDIILTIGA 437

Query: 468 GHETVHIV 475
           G     I+
Sbjct: 438 GDIDTLII 445


>gi|223984266|ref|ZP_03634411.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
 gi|223963751|gb|EEF68118.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
          Length = 438

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 105/290 (36%), Gaps = 26/290 (8%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  QG     V           ++          NL  DH+DY  +  AY++AKM L 
Sbjct: 142 EIVREQGDQKTDVALEVAAFQLVAMEKFHPAVSVCMNLTPDHLDYFGSLDAYYDAKM-LV 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +    +   ++  DD    E++KR     CR ++           K   +    Q   +
Sbjct: 201 WKNQTGDDWFLVNLDDP---EIVKRCAELPCRRVTFSLDQPADVCVKQDQVWLFDQPLFA 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +          LPG   + NA+VAA + + +G+D+  + E +     V  R EFV    R
Sbjct: 258 LSD------LHLPGRHNLQNAMVAAAMAVKLGVDADQIREGIRAFKGVEHRIEFV-AEIR 310

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G R Y D   T+     +      + +    V+   GG   +     +  +   +A + +
Sbjct: 311 GARYYNDSKGTN-----VDATTVALKAFEKPVILLAGGYDKKTGFDGLKPVLDRVATMIV 365

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                       + R ++    P  I      EA+  A ++    D++++
Sbjct: 366 Y----------GETRGQLKALRPDAIVVETLSEAVEQAYQLAKAGDIVLL 405


>gi|222086446|ref|YP_002544980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein
           [Agrobacterium radiobacter K84]
 gi|221723894|gb|ACM27050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein
           [Agrobacterium radiobacter K84]
          Length = 470

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 114/303 (37%), Gaps = 35/303 (11%)

Query: 66  QGAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +G    V+S    L      ++  +     + V+ +   F+     R         +A+T
Sbjct: 64  KGLSVFVLSPGVPLTHPKPHWTVDLARAAGVEVIGDVELFVRE---RREHAPDCPFIAIT 120

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  + +  I Q SG  +   G   T                     L+    + 
Sbjct: 121 GTNGKSTTTALIAHILQSSGRDTQLGGNIGT-------------------AILTLDPPKA 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +  VE SS+ +D      +   AG   NL  DH+D H T Q Y + K RL        
Sbjct: 162 ERYYVVECSSYQIDLA--PTLDPSAGILLNLTPDHLDRHGTMQHYADIKERLVAG----S 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF 300
             AI+  DD+YS  +  R   AG +V+ +  +      L    +   +  +    E  D 
Sbjct: 216 GVAIVGVDDSYSSLIADRIERAGAKVIRISRRHALAGGLYAEGSRIIEASICAIEEIADL 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D +  L G     NA  A   C+A+G+    +   L     +  R + VG   RG  ++V
Sbjct: 276 DGIQTLRGSHNAQNAAAAIAACLAVGVSGDDIRAGLRSFPGLKHRMQPVG--RRGRVVFV 333

Query: 361 DYA 363
           + +
Sbjct: 334 NDS 336


>gi|220906241|ref|YP_002481552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 7425]
 gi|254766047|sp|B8HW13|MURD_CYAP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219862852|gb|ACL43191.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7425]
          Length = 453

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 130/367 (35%), Gaps = 47/367 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R   + P   + +TGT+GK++  + V  + Q +GL +   G               
Sbjct: 98  ELAWRHLQQFP--WVGITGTNGKTTTTALVAAMFQTAGLKAIACGNIG------------ 143

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             S   L      LS Q +  V  E SS+ L+   L  +      +T    DH++ H T 
Sbjct: 144 -YSVCDLV-----LSEQAIDWVIAEISSYQLES--LPRLAPKIAVWTTFTPDHLERHGTL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y   K  L    L +    ++  DD Y   + +   +    V      G+      + 
Sbjct: 196 ECYRETKAVL----LQQAEYKVLNGDDPY---LRQELSDRWPEVWWTSCNGRAALPHGIE 248

Query: 284 AIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                ++  + V+ +    +  + +PG   + N L+A  +    GI  A + E +     
Sbjct: 249 RGIYLEEGWVKVQEQPIVPVSSWKMPGHHNLQNLLLAVAVAHLGGIPVAAIAEAVNNFGG 308

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R E + T S    I    A   ++ E  L  +        +++   G  +    R  
Sbjct: 309 VPHRLEPICTWSGIQFINDSKATNYDAAETGLVAVPA-----PVILIAGGQAKQGDDRRW 363

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK- 458
           +  I    A + ++            + A+ +   G   +        A+  A E+  K 
Sbjct: 364 LEMIQTKAAAVLLIGA-------AANLFAQRLQEVGYDRYEIVETMANAVPRAAELAKKY 416

Query: 459 -QDVLVV 464
             +++++
Sbjct: 417 SANIVLL 423


>gi|15643003|ref|NP_228045.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga maritima MSB8]
 gi|6919931|sp|Q9WY73|MURC_THEMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4980729|gb|AAD35322.1|AE001707_9 UDP-N-acetylmuramate--alanine ligase [Thermotoga maritima MSB8]
          Length = 457

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 122/346 (35%), Gaps = 34/346 (9%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           +  +R + P +V            +R+     EN L     + K         +    G 
Sbjct: 66  TPAVRDDNPEIV-----------RARMERVPIENRLHYFRDTLKREKKEEFA-VTGTDGK 113

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++        +    +   +     +   +  +Y    G     ++ S     +   + +
Sbjct: 114 TTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKGNGPVVYELDESEEFFSEFSPNYL 173

Query: 203 KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                  TN   DH++ +  +   Y +A    FE++       + +A+D  +  +     
Sbjct: 174 -----IITNARGDHLENYGNSLTRYRSA----FEKISRNTDLVVTFAEDELTSHLGD--- 221

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
                 ++ G +     L+   A   +Q+  +   GK + +    +PG   V NAL    
Sbjct: 222 ------VTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIA 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILKNIRTI 379
           L  ++G D A VLE LE+   V  RF     +      +  DYAHT + +  +L+  + +
Sbjct: 276 LFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEV 335

Query: 380 TSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
                IVV F         +       AL LAD  +VT+     E+
Sbjct: 336 FENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEE 381


>gi|320179650|gb|EFW54599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           ATCC 9905]
          Length = 438

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 147/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +                     +     I L   +  L         +
Sbjct: 118 TVTTLVGEMAKAA------------------GGNVGVGGNIGLPALM--LLDDECELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+ ++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLCIYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  +      A  R +S G      HL      H + +  + V+G+    +   
Sbjct: 212 NADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYLNGDNVRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+        +     +A+R     +   D++++
Sbjct: 377 LAALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|289677699|ref|ZP_06498589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae FF5]
          Length = 448

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 123/352 (34%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   ++++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENSEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 DGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSGLRAPVAKYCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +P  +       A+  + ++  + D +++
Sbjct: 376 VLL------GRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLALRGDAVLL 420


>gi|224437375|ref|ZP_03658347.1| hypothetical protein HcinC1_05382 [Helicobacter cinaedi CCUG 18818]
          Length = 492

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 121/309 (39%), Gaps = 29/309 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ VTG+ GK+S+ +F+ QI +            +T +    D          +    + 
Sbjct: 167 IIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGIVADINNNLDYTTEIYITEAG 226

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +G   +  E             I         +G  H++Y ++ +     K  L + 
Sbjct: 227 ARLKGDIALISE------------FINPHYAVIGEVGEQHLEYFKSLENIVETKFELLQS 274

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   A ++ D+   + +     NA  + ++   +     ++ V A        + ++
Sbjct: 275 --KRLKKAFVFKDNLKPQNL----DNALAKKITYFPEN----VRNVEANLEGTSFDLFIK 324

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +   F   + G+F V N   A  + + +G+    + + ++++  +P R   + TN +  
Sbjct: 325 NEWHRFDTMVLGQFNVVNLSAAIYMGVELGLRVEEIQKAVKRIEPIPHRLNKIQTNQK-- 382

Query: 357 RIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + +D     N L+ + + IR  ++  GR I+V     +  +     + K   ++ DIAI
Sbjct: 383 -LIIDDGFNGN-LKGMKEAIRLSSLYEGRKIIVTPGIVESTKEANIELAKAIDEVFDIAI 440

Query: 415 VTDD-NPRS 422
           +T + N R+
Sbjct: 441 ITGELNART 449


>gi|326330650|ref|ZP_08196954.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325951491|gb|EGD43527.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 496

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 140/424 (33%), Gaps = 62/424 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNT-PILVVDNTRKFLSLF--------------ASRLY 110
            G   ++ +    L    A + +   PIL V      L++               A+   
Sbjct: 99  AGVLFVLHAVVTVLIALLAPVAAGLLPILAVPLAEAALAIMWPIEKAMAKKWQVQAAATI 158

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    I+A+TG+ GK+S  ++   + Q         G  ST++S       +  + + L
Sbjct: 159 KKVNPKIVAITGSYGKTSTKNYATHLMQ---------GRWSTLAS-----PASFNNAMGL 204

Query: 171 AKALSYLSSQGVTHVSVEASSHG--LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           ++A++     G      E  ++G        +       + T +G  H++  ++++    
Sbjct: 205 SRAVNDRLQPGTDIFVAEMGTYGPGEIAELTEIFPPEVAAITTIGEAHLERMKSRETIVK 264

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +    LPK S  ++  D      + +    +   +           +    A    
Sbjct: 265 AKSEI----LPKASTVVLNIDVPELALIAENLRASKRVI-------ACSAVPGTAAEVLV 313

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +++  + +    P      + N  +A GL +A+ +    + + L  +   P R E 
Sbjct: 314 TDGKLTINNETYAVELPDEVGHPI-NVAIAVGLALAVEVPIETITQRLASIPGTPHRAEA 372

Query: 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS--GRIIVVFGCGGD--RDQGKRPIMG 403
             T   G  +  D +          L   + +    G +  +     +   +Q  R I  
Sbjct: 373 NRTPG-GVWVIDDTFNSNPTGAAAALAKAKRLAGESGTVWTITPGMVELGTEQAARNIEF 431

Query: 404 KIALDLADI---AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQ 459
             A   +D     IV   N         R  +  G P      + R  A   A+    + 
Sbjct: 432 AQAATASDKMQLCIVGRTN---------RKALRAGDPARTTAFDSRKAAADHALTAAKEG 482

Query: 460 DVLV 463
           DV++
Sbjct: 483 DVVL 486


>gi|308182899|ref|YP_003927026.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori PeCan4]
 gi|308065084|gb|ADO06976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori PeCan4]
          Length = 493

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 139/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        +           +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLTDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   + G+F  YN   A  +   +G++   +   + +L+ +  R + +  N + 
Sbjct: 325 GSVWESFETKVLGKFNAYNIASAILIAKHLGLEIERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNIESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++ +     ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKNPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|283798343|ref|ZP_06347496.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           M62/1]
 gi|291073926|gb|EFE11290.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           M62/1]
 gi|295092803|emb|CBK78910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium cf.
           saccharolyticum K10]
          Length = 448

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 111/310 (35%), Gaps = 27/310 (8%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  N+  DH+D H+T + Y   K  + +    +    ++ 
Sbjct: 161 EVSSFQLE--TIMDFRPNVSAILNITPDHLDRHKTMERYIEIKEGITKNQ-KENDVCVLN 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   +E  +      C+V+    + K      +       +   +V          L 
Sbjct: 218 YDDPVLREFGETLK---CKVVYFSSREKLKKGLFLDGDQIVYKDGETVTEIVNIHELKLL 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  + + + +    +   +++   V  R EFV    R G  Y + +  +N
Sbjct: 275 GRHNHENVMAAVAIAMNMDVPMDTIRRVVKRFEAVEHRIEFVTE--RFGVKYYNDSKGTN 332

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +  ++ I+ +    +++    G D+       +      +  + ++       +  +K
Sbjct: 333 P-DAAMQAIKAMPGPTLLI--AGGYDKHSEYDEWIESFGGKVRYLVLI------GQTRDK 383

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV----AGKGHETVHIVTNGEKKM 482
           I      HG    +   +  EA++      N  D +++    A  G     +  N E++ 
Sbjct: 384 IAECAKRHGFTDIMYAEDLKEAVQVCASYANAGDNVLLSPACASWG-----MFKNYEERG 438

Query: 483 SVDCDIIREI 492
            +  + +R +
Sbjct: 439 RMFKEYVRNL 448


>gi|258593038|emb|CBE69349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [NC10 bacterium
           'Dutch sediment']
          Length = 460

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 153/404 (37%), Gaps = 58/404 (14%)

Query: 68  AEAIVVSSAYSLQD--FSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+ +VVS    L++  F     +  P++  V+         A R         + +TGT+
Sbjct: 70  ADLVVVSPGIDLREPRFRRVREAGIPLIGEVE--------LAYRYSD---ATFIGITGTN 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  + +++GL S+  G   T                     L  ++      
Sbjct: 119 GKSTTTTLIGAMLKQAGLPSYVAGNIGT--------------------PLCRVAPSLAAG 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             V A         +D  +       NL  DH+D +   + Y+ AK R+FE   P +  A
Sbjct: 159 ECVVAELSSFQLETIDEFRPRVALLLNLAPDHLDRYDQVEDYYRAKARIFENQRPSD-FA 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
           +I ADD    +V  +A     R ++              A     Q+ ++++G       
Sbjct: 218 VINADDPLVLQVSAQARG---RRIAFSR----TRPLDTGAYVEDDQLMLALDGVREVICR 270

Query: 303 --LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + G   + NAL A       G  +  +   L     +  R EFV   +  G  Y+
Sbjct: 271 KSELKIQGVHNLENALAAGLAAAVAGTPTTAIRIALTSFEGLEHRLEFVAEIA--GVRYI 328

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           + +  +N +  +++++ + T+   +V+   G D+     P++  +   +  + ++     
Sbjct: 329 NDSKGTN-VGAVVRSLESFTNP--VVLIAGGRDKHGDFAPLIPLVRERVKRLILI----- 380

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E  E +R  ++  +       +  EA+R A    +  +V+++
Sbjct: 381 -GEAAETLRR-MLASVCPTEVVSSLEEAVRRAAAAASPGEVVLL 422


>gi|237799288|ref|ZP_04587749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022144|gb|EGI02201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 448

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 119/350 (34%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++ KS+V + V  + + +G      G   T +     + +            
Sbjct: 109 APIIAITGSNAKSTVTTLVGDMAKAAGKRVAVGGNLGTPALDLLSDDIDL---------- 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 159 ----------YVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYTGLPAYHQAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++  +  
Sbjct: 259 FENLMPVRDLKVRGAHNQANALAALALGHAVGLPFEAMLASLREFTGLEHRCQWLREHDG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    +    +K + +   G+++++   G  +      +   +      + +
Sbjct: 319 VDYYNDSKATNVGAALAAIKGLGSDIDGKLVLI-AGGDGKGADFSGLRAPVTEHCRAVVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  D        ++ A+++      I       A+  +  +    D +++
Sbjct: 378 LGRD-------AELIAQVLGDAVPLIRVDTLQAAVERSASLAQGGDAVLL 420


>gi|223933725|ref|ZP_03625699.1| UDP-N-acetylmuramate/alanine ligase [Streptococcus suis 89/1591]
 gi|302024346|ref|ZP_07249557.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus suis 05HAS68]
 gi|330833341|ref|YP_004402166.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis ST3]
 gi|223897606|gb|EEF63993.1| UDP-N-acetylmuramate/alanine ligase [Streptococcus suis 89/1591]
 gi|329307564|gb|AEB81980.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis ST3]
          Length = 443

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 105/348 (30%), Gaps = 42/348 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
           +++   L   +A    N   +   + + +         G+  +    L V G  GK+S  
Sbjct: 59  ITADVELIAGNAFRPDNNVEIAYVDAQGYTYKRYHEFLGEFMKGFTSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +SF IG  +   S      +                            
Sbjct: 119 GLLAHVMRNITDTSFLIGDGTGRGSANAQYFVFESDEYERH------------------- 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY  + +  FNA     +++   +   +++ +D
Sbjct: 160 --------FAPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQV---KKALLVFGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              + +   A      +   G++         +    +  Q  +    ++  +F  P  G
Sbjct: 209 EQLRRITANAP-----IYYYGFEENNDFVAYDLKPSTSGSQFKVRHGEEELGEFQIPTFG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NA          G D  LV EHL+    V  RF     N     I  D+AH    
Sbjct: 264 KHNVMNATAVIANLYIAGFDLQLVAEHLKTFGGVKRRFTEKIVND--TVIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   +   R    S  ++ +F                 AL+ AD   +
Sbjct: 322 IIATIDAARQKYPSKELVAIFQPHTFTRTIALLDEFADALNGADAVYL 369


>gi|325125488|gb|ADY84818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 460

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 127/355 (35%), Gaps = 44/355 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQI----CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     QQI     Q+ G  ++ +G        ++           L
Sbjct: 113 SPYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S     GVT +                +  I   + N+   H+DYH+T   Y +AK
Sbjct: 171 VVEMSSFQLMGVTDIE-------------PKVAAIVDIYNNV---HLDYHKTFDNYVDAK 214

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           +     +   +  +  +  +   K+++ R   A   ++L+            V   +  Q
Sbjct: 215 L----NVGRFQKASDYFLANFDQKDILAREEKATKAKILTFSEN------DPVADFYIGQ 264

Query: 290 QVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +  E K        LPG   + N+LVA G+   +G     +   L        R ++
Sbjct: 265 DYLMHGEEKMMKIADIKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQY 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T   G ++Y D   T+  +E     I++       V+   G DR      ++      
Sbjct: 325 VTT-LDGVKVYNDSKSTN--IEAATVAIQSFKQPE--VLLAGGLDRGFVFDSLVD--LFK 377

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               AIVT    R    +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 378 KHVKAIVTYGETRYLLADAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|144897242|emb|CAM74106.1| hypothetical protein MGR_2077 [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 112

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR +  G +F A+ G+K DG  FIPQA+AQGA  IV  +    +  +A +   
Sbjct: 18  ITAITCDSRKVGPGTLFFALSGSKADGRAFIPQAVAQGAVVIVAETGTQAETGTALL--- 74

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              + VDN R+  +L A+ L+G+ PE + A+
Sbjct: 75  ---VTVDNPRRAYALAAAPLHGRQPEVMAAI 102


>gi|227877322|ref|ZP_03995395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           crispatus JV-V01]
 gi|256848742|ref|ZP_05554176.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-1A-US]
 gi|262045850|ref|ZP_06018814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-3A-US]
 gi|293381718|ref|ZP_06627699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus 214-1]
 gi|312977598|ref|ZP_07789345.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           crispatus CTV-05]
 gi|227863178|gb|EEJ70624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           crispatus JV-V01]
 gi|256714281|gb|EEU29268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-1A-US]
 gi|260573809|gb|EEX30365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-3A-US]
 gi|290921765|gb|EFD98786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus 214-1]
 gi|310895337|gb|EFQ44404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           crispatus CTV-05]
          Length = 459

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 116/357 (32%), Gaps = 49/357 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I     Q+SG  ++ +G      S               
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD------ 166

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF----TNLGRDHIDYHQTQQAY 226
                         + VE SS  L    +  I     +      N+   H+DYH+T + Y
Sbjct: 167 ------------DILVVEISSFQLL--GVTDIDPKVAAIVDIYNNV---HLDYHKTFENY 209

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            NAK+             I   D        K    A  +  S         +       
Sbjct: 210 VNAKLN-VTRTQNSNDYFIANYDQKDILAKEKEVSPAKMQTFSETDHNADYFIGDEYLES 268

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +++    +         LPG   + N+LVA  +   +G D+  +   L        R 
Sbjct: 269 QNEKIMKISD-------IKLPGIHNLQNSLVAIAISKIMGADNDDIAAVLSTFTGAKHRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++V T   G ++Y D   T+  +E     I +       V+   G DR      ++    
Sbjct: 322 QYVTT-LDGCKVYNDSKSTN--IEAATVAIPSFKQPE--VLIAGGLDRGFTFDDLVPLFK 376

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             +  I +  +      D  +       GI   +      EA+  A E++   DVL+
Sbjct: 377 KHVKSIVLYGETRYLLADAAR-----KAGIKDIVIVNTLQEAVPRAWELVEPGDVLL 428


>gi|330446841|ref|ZP_08310492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491032|dbj|GAA04989.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 446

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 135/400 (33%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S   +L      + +   + ++ +   F             + ++A+TG++GKS
Sbjct: 69  ADMIIASPGIALATPELVLAAEAGVEIIGDIELFAREV--------DKPVVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G+    +G    I                   AL  L+ Q   +  +
Sbjct: 121 TVTSLVGEMAKEAGID---VGVGGNIG----------------FAALDMLAQQHQLY-VL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++L A  + NL  DH+D +      Y  AKMR+F+        A+ 
Sbjct: 161 ELSSFQLE--TTSSLELTAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH----AKLAVF 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
             DD     +  +       + S G+  +   +  V          + V G+    +   
Sbjct: 215 NRDD-----LATKPTQFSGAMTSFGFDEQAYGIVSVDGKEW-----LVVNGEAVMAVADI 264

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   V N L A  L  A G+        ++    +  R +    N  G R   D   
Sbjct: 265 ALVGRHNVANCLAALALADAAGVPRDASCRAMQHYTGLAHRCQL-AVNRHGVRWVNDSKA 323

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T+  L   L  +  +     + +   G  +      +   +A     +     D    +D
Sbjct: 324 TN--LASTLAALNGLQLEGKLHLLMGGDSKGAEFSELKPVLADLNVQLYSFGRDRHLFDD 381

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                          I      EA+      +   D++++
Sbjct: 382 VTN----------NVISVETMSEAMEQVSRTVQSGDMVLL 411


>gi|289810798|ref|ZP_06541427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 160

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +         TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  
Sbjct: 1   MGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFA 60

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A  
Sbjct: 61  ASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVA 118

Query: 266 RV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 ++    G+++  + V        +  +    + +  
Sbjct: 119 VSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIE 160


>gi|322373855|ref|ZP_08048390.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C150]
 gi|321277227|gb|EFX54297.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus sp. C150]
          Length = 442

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +  + +    +S+ IG  +   S                    Y 
Sbjct: 106 FGVAGAHGKTSTTGLLSHVMKNITDTSYLIGDGTGRGSANA----------------QYF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY  +    F+A     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D+Y +++   A      +   G++         +          +  +
Sbjct: 199 ---QKGLFVYGEDSYLRKITSNAP-----IYYYGFEENDDFMATDIVRTTTGSNFKVKHD 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   +F  P  G   + NA          G D ALV EHL     V  RF     N  G
Sbjct: 251 GQIIGEFHVPAYGRHNILNATAVIANMYVAGFDMALVAEHLNTFSGVKRRFTERIIN--G 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 309 TVIIDDFAHHPTEIIATLDAARQRYPSKEIVAIFQPHTFTRTIALLDEFAEALNEADAVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|317402449|gb|EFV83018.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Achromobacter
           xylosoxidans C54]
          Length = 510

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 153/437 (35%), Gaps = 70/437 (16%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSA------TIRSNTPIL-VVDNTRKFLSLFASRLYGKHPE 115
           A+  G   +VVS   +     A             ++  ++   + L+  A     +   
Sbjct: 74  ALLDGVSQVVVSPGLAPDGAPAGDLLREAKARGIEVIGEIELFARALAELAETREYRP-- 131

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +LAVTGT+GK++V +  + +   SGLS    G    IS  A    +       L +   
Sbjct: 132 RVLAVTGTNGKTTVTALTRDLVAASGLSVLAAG---NISPAALTALMQALDADDLPQ--- 185

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +E SS  L+      +   A    N+ +DH+D+H    AY   K RL  
Sbjct: 186 --------VWVLELSSFQLE--TTHTLMADAAVVLNVTQDHLDWHGGMDAYARTKARL-- 233

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L     AI+  DD Y+ +++        R  S G +   +       +       ++ 
Sbjct: 234 --LKMTRIAIVNRDDPYTVDMVPSLAAMPVR--SFGREVPELVGDMGLELGQGVAWLVAA 289

Query: 296 EGKDFDFLFPLPGE----------------------------FQVYNALVAAGLCIAIGI 327
           E  DFD                                        NAL A  L   + +
Sbjct: 290 EPLDFDEPVAPVRRKKDAPEPTRAKGRMSRLMPVDALRIRGIHNALNALAALQLARCLDL 349

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +L  L +    P R  FV   S GG  Y++ +  +N +   +  +  +  G+ +V+
Sbjct: 350 GWGPMLRALREYAGEPHRAAFV--RSIGGVDYINDSKGTN-VGATVAALEGM--GQPVVL 404

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              G  + Q   P++  ++     + ++  D P      +I   +       I   +  +
Sbjct: 405 IAGGQGKGQDFSPLIPVVSRHARAVLLIGQDGP------EIGRVLAATGVDCIAVESLRD 458

Query: 448 AIRTAIEMLNKQDVLVV 464
           A+R A E+    DV+++
Sbjct: 459 AVRRAAELAQAGDVVLL 475


>gi|83592288|ref|YP_426040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodospirillum rubrum ATCC 11170]
 gi|118595685|sp|Q2RVU2|MURD_RHORT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83575202|gb|ABC21753.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 477

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 117/348 (33%), Gaps = 41/348 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S        +        ++  +               +     L +TGT+GKS+  
Sbjct: 77  VVWSPGIP---HTFPQPHPVAVIAHERGVPLFCDIDLLARARQDCFFLGITGTNGKSTTT 133

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I + +       G   T                    ALS+          +E S
Sbjct: 134 ALIGHILKAARHPVQVGGNLGT-------------------PALSFEPLPFHGTYVLELS 174

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ L+   +  +        N+  DH+  H     Y  AK ++F    P+   A++  DD
Sbjct: 175 SYQLEL--VPSLCCDVAVLLNITPDHLARHGGMDGYIAAKRQIF-RCGPRPGVAVVCIDD 231

Query: 251 AYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLF 304
             S  +        G +V++V  +     L +        Q+  + +G+     D   + 
Sbjct: 232 EPSLAIHDALCRENGRKVVAVSTRA----LPRGGVGAVDGQLVDATQGRPRAVADLTTIA 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG     NA  A   C   GID+ +++E +     +P R E V        I    A 
Sbjct: 288 TLPGAHNWQNAAAAYAACRQHGIDAKIIVEAMASFPGLPHRQELVAEIDGVRFINDSKAT 347

Query: 365 TSNSLEMILK---NIRTITSGRII---VVFGCGGDRDQGKRPIMGKIA 406
            +++ +  L+    +  I  G+     +V          +  ++G+ A
Sbjct: 348 NADAADKALRCYDTVYWIAGGQPKEGGIVSLEPHFHRMRQAYLIGQAA 395


>gi|163854876|ref|YP_001629174.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella petrii DSM 12804]
 gi|163258604|emb|CAP40903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella petrii]
          Length = 458

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 98/305 (32%), Gaps = 22/305 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++ +S +  I + +GL    +     I   A D ++   S  Y   
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILEAAGLRPNFL-----IGGVAHDLKV---SARYDPA 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              ++        +          +R            NL  DH D      A    +  
Sbjct: 153 VRPFVIEADEYDTAFFDKRSKFVHYR-----PRTAILNNLEYDHADIFPDLAAI-ETQFH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P+    ++    A    VM  A       +  G  G +       A  +     
Sbjct: 207 HLVRTIPERGRIVLPTGSAALDRVM--ARGCWSETVRFGAGGAWQAGP---ADADGAFEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +          + L GE    NAL A       G+D A  +  L +   V  R E  GT 
Sbjct: 262 LRHGQAIGTVRWTLGGEHNRLNALAALAAAEHAGVDPAEGVAALSRFGGVKRRMELRGTA 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLA 410
             G ++Y D+AH   ++E  L+ +R       I+              +  +   AL  A
Sbjct: 322 G-GVKVYDDFAHHPTAIETTLEGLRRQVGQARILAVLEPRSNTMKLGAMAARLPAALQGA 380

Query: 411 DIAIV 415
           D    
Sbjct: 381 DRVFC 385


>gi|121998786|ref|YP_001003573.1| UDP-N-acetylmuramate [Halorhodospira halophila SL1]
 gi|121590191|gb|ABM62771.1| UDP-N-acetylmuramate [Halorhodospira halophila SL1]
          Length = 454

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 119/362 (32%), Gaps = 33/362 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+ GT GK++ AS    I +R GL    +        F++ +        ++ +A  Y
Sbjct: 105 VVAIAGTHGKTTTASMATWILERCGLDPGYL--IGGAPGFSERSARLGTGSPFVVEADEY 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++       V               +       NL  DH D +   +A    ++     
Sbjct: 163 DTAFFDKRAKVVHY------------QPRVLLLNNLEFDHADIYPDLEAI-ATQLHHAIR 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     +I  DD +   V+ R   +    +  G    +    ++ A    +   +   
Sbjct: 210 TVPANGRVLINGDDPHLPSVVARGCWSRLERIGFGADNDW----RIDADEAAEHAVLVHR 265

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G        P PG   + NA  A     + G D    ++ + +   V  R E  G    G
Sbjct: 266 GTPLGALQPPQPGRHNLANAAAAVAAAASAGADPTTAVKAINEFPGVRRRLELRGC-VDG 324

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  D+AH  +++   L  + T     + V+         G        AL  AD A V
Sbjct: 325 VEVIDDFAHHPSAVAATLNALATPGRRLLAVLEPRSNTMRLGIHRHQLAEALGHADQAFV 384

Query: 416 TD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG----- 468
               D P S       A +   +    E  +     R A+      D LVV   G     
Sbjct: 385 LTPPDLPWSVSEA--LAPLGERLHTAAEVSDLA---RLALAKARPGDCLVVMSNGAFGDI 439

Query: 469 HE 470
           HE
Sbjct: 440 HE 441


>gi|317129299|ref|YP_004095581.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474247|gb|ADU30850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 451

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 139/412 (33%), Gaps = 58/412 (14%)

Query: 67  GAEAI-------VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPE 115
           GAE +       ++S        +  I    P++     +    L     A  +      
Sbjct: 56  GAEVVCGSHPLTLISDDLDYVVKNPGIPYTNPLVSAAMEKAIPVLTEVELAYHICE---A 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +I+ +TG++GK++  +++ ++ + S       G    I   A +          L   LS
Sbjct: 113 DIIGITGSNGKTTTTTYIYEMLKGSEKDPLLAG---NIGEVACEVAQKATEKNVLVTELS 169

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G                 +D  K       NL   HIDYH T  AY +AK  +F+
Sbjct: 170 SFQLMG-----------------IDEFKPKISLLLNLVEAHIDYHGTMDAYVHAKGNIFK 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +   I  ADD   K+V K        ++    +G+  H   +   +      ++V
Sbjct: 213 NQTSND-YIIYNADD---KKVSKLVELGQATLIPFSTKGEMKHGACIENGY------LTV 262

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            GK    +    LPGE  V N L AA      G     + + L+    V  R ++V    
Sbjct: 263 FGKRLLPVEEMSLPGEHNVANGLAAAAAAHLAGASEEKIRQVLKSFSGVAHRLQYVD-KI 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G   Y +   T+      +  ++       IV+   G DR      ++      +  + 
Sbjct: 322 NGRTFYNNSKATNVP--ATITALKAFEQP--IVLIAGGLDRGLSFDDLIPYFKKKVKCVV 377

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVV 464
                    E  +K+           +     +E A++ A     + D++++
Sbjct: 378 ------SYGETAQKLVETAKKANIELVHCEKTLENAVKKAYVNSEEGDIILL 423


>gi|17547501|ref|NP_520903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17429804|emb|CAD16489.1| probable udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
           diaminopimelate ligase transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 461

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 132/411 (32%), Gaps = 40/411 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+  V+ +  S  +       +  +  V             +  +  + +LAV GT GK
Sbjct: 61  GADLYVIGNVISRGNPLMEAILDRNLPYVSGP----QWLGDNVLRQ--KWVLAVAGTHGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I Q +G     +     +    ++  L+           + L++     + 
Sbjct: 115 TTTTSMLAWILQDAGYDPGFL-----VGGVPRNFGLS-----------ARLTASDFFVIE 158

Query: 187 VEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +         R   +  +       NL  DH D      A    +       +P +   
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHLVRTVPGQGRL 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++   +   K V+ R     C   +  +  +      +  + +     + ++G+      
Sbjct: 218 LVNGREDSLKRVLARG----CWSEAEFFGAEDSAGWAIANLGDDDSFDVMLDGQVQGRVR 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PL G+    NAL A      +G+  A  +E L +   V  R E  GT   G  +Y D+A
Sbjct: 274 WPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-VDGITVYDDFA 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI----VTD 417
           H   ++   +  +R       I+            G        +L+ AD          
Sbjct: 333 HHPTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAAGG 392

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    D     A +      F +    +EA+  A       D ++V   G
Sbjct: 393 RDAIGWDLAGALAPLGERAQAFSDLVALVEAVTAA---ARPGDHVLVMSNG 440


>gi|255027424|ref|ZP_05299410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J2-003]
          Length = 420

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 102/282 (36%), Gaps = 26/282 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     +S
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTTDDS 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 221 LV-INWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++         I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKTLIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVL 462
           E  +KI R   I GI   +   + +E A+  A       D++
Sbjct: 381 ETADKIGRVGKIAGIE--VHYVDNVEAAVPVAYRESAPGDII 420


>gi|58700177|ref|ZP_00374680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533307|gb|EAL57803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 95

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQD 460
           MGKIA   AD  I+TDDN R EDP KIR +I+   P  +E G R EAI   +++  N+  
Sbjct: 1   MGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGM 60

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +L+VAGKG+E   I+ N   +   D ++I+ 
Sbjct: 61  ILLVAGKGNEKFQIIGNQTFE-FSDVEVIKN 90


>gi|198282931|ref|YP_002219252.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668082|ref|YP_002425134.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247452|gb|ACH83045.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520295|gb|ACK80881.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 455

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 119/361 (32%), Gaps = 33/361 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++  S +  I Q +GL    +      +     +   T SP ++ +
Sbjct: 101 QSRWVLAVAGTHGKTTTTSILTWILQEAGLDPGFL--IGGEARNFGVSARLTDSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y ++                          +    NL  DH D     +A       
Sbjct: 159 ADEYDTAFFDKRSKFVHYH------------PRSLILNNLEYDHADIFPDMEAIITQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     I+       K V++R       +      G++             + T
Sbjct: 207 LL-RTVPGAGAIIVKDGVPALKRVLER--GCWTPLQRFAGTGEWQVRLDAVD---GSRFT 260

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G +     + + G F   NAL A       G+  A+    L     V  R E  G 
Sbjct: 261 VLEQGVERGQVGWEMAGSFNAENALAALLAARHAGVPLAVGCAALRSFQGVRRRLELRG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALD 408
            + G  +Y D+AH   ++   +  +R    G  R+I V          G        +L 
Sbjct: 320 RAGGVAVYDDFAHHPTAIAATITALRGRMEGTERLIAVLEPRSNTMKMGVHRQTLGPSLQ 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGK 467
            AD A V         P  +  ++   +    +    ++A+  A++  L   D +++   
Sbjct: 380 GADRAFVYA-------PADLGWDVAAALDSAAQVYVDMDALLRALDAELRPGDDVLIMSN 432

Query: 468 G 468
           G
Sbjct: 433 G 433


>gi|332994935|gb|AEF04990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas sp. SN2]
          Length = 460

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 125/422 (29%), Gaps = 62/422 (14%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A+++G  A+                ++ P  ++DN  K                ++ 
Sbjct: 67  IGNAMSRGNSAV------EYVLNRNLPYTSGPQWLLDNLLK-------------DRWVIG 107

Query: 120 VTGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           V+GT GK++ +S V  I + S    G     +     +S+   ++            A  
Sbjct: 108 VSGTHGKTTTSSMVAWILEYSELNPGYLIGGVPENFGVSARIGESPFFVIEADEYDSAFF 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S+ V +                  +       NL  DH D      A    +     
Sbjct: 168 DKRSKFVHY------------------RPKTLVINNLEFDHADIFADLAAI-QTQFHHLV 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            ++P+    +        +E +K+      + L   +  + I+           Q  +  
Sbjct: 209 RMVPENGLILTPNHTPAIEETLKKGCWTPRQCLGKEWSAELINKD-------GSQFNVLF 261

Query: 296 EGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
             +      + L G+  V NAL+A       G+     +  L     V  R E  G    
Sbjct: 262 NNEIVGAVQWELLGQHNVDNALMAIAAAHHAGVTLHDAIAALSSFKNVKRRMEIKGVVTL 321

Query: 352 --NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   +Y D+AH   ++   +  +R       I+                  +A   
Sbjct: 322 AAEGKPVTVYDDFAHHPTAIATTIDGLRKKVGNARILAVLEPRSNTMKMGVHKNTLAHSW 381

Query: 410 --ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
             AD   V +  P+  D      E     P      N +E I   +   +   D +++  
Sbjct: 382 QAADAVYVYE--PQGLDWS--LKEAAAASPAPTTVFNDVENIVKVLQSEVRPGDHILIMS 437

Query: 467 KG 468
            G
Sbjct: 438 NG 439


>gi|167765846|ref|ZP_02437899.1| hypothetical protein CLOSS21_00337 [Clostridium sp. SS2/1]
 gi|167712563|gb|EDS23142.1| hypothetical protein CLOSS21_00337 [Clostridium sp. SS2/1]
 gi|291559201|emb|CBL38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [butyrate-producing
           bacterium SSC/2]
          Length = 454

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 113/313 (36%), Gaps = 33/313 (10%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K    +  N+  DH+D H T + Y   K  + +    K+   ++ 
Sbjct: 164 EISSFQLE--TIVDFKPDVCAVLNITPDHLDRHGTVEVYAQTKESIGKNQT-KDQVMVLN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            +D  ++ +  RA+     VL         H  K           I   GK         
Sbjct: 221 YEDDTTRAMADRANGT---VLFFSL----HHKIKEGVSMEGDAFIIEENGKKQIVCTLDD 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+    N L A  +  ++G+  + + E +++   V  R E+V T    G  Y + +
Sbjct: 274 VNLLGDHNYENILAAIAVTYSMGVPVSYIKEGIKRFKGVEHRIEYVDTVK--GVAYYNDS 331

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +N  +  +K I+ +     ++  G G D+       +      + ++ ++    P+  
Sbjct: 332 KGTNP-DAAIKGIKAMNRPTWLI--GGGYDKKSTYDEWIEAFDGKVKELILMGVTAPKIA 388

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV----AGKGHETVHIVTNGE 479
           D  K      HG        +  EA+          + +++    A  G     +  N E
Sbjct: 389 DCAK-----THGFDKIKFVDSMEEAVSYIAGKAQDGEAVLLSPACASWG-----MFPNYE 438

Query: 480 KKMSVDCDIIREI 492
            +  +  D +R++
Sbjct: 439 VRGDIFKDCVRKL 451


>gi|153952827|ref|YP_001393592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           kluyveri DSM 555]
 gi|219853492|ref|YP_002470614.1| hypothetical protein CKR_0149 [Clostridium kluyveri NBRC 12016]
 gi|189082874|sp|A5N4L3|MURD_CLOK5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766045|sp|B9DY75|MURD_CLOK1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146345708|gb|EDK32244.1| MurD [Clostridium kluyveri DSM 555]
 gi|219567216|dbj|BAH05200.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 458

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 129/384 (33%), Gaps = 42/384 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  I  VTG+ GK++  + +  I ++ G  S+  G   T      +    TP   
Sbjct: 111 FIRYCPAKIYGVTGSDGKTTTTTLMYNILKKQGYKSWIGGNIGT--PLFSEVEEITPDDR 168

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +                +E SS  L       I       TN+  +H+D H+  + Y  
Sbjct: 169 VV----------------IELSSFQLMTM---NISPEVAVITNVSPNHLDIHKDMEEYIM 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         ++  D+  +  +   A     +V     + K      +      
Sbjct: 210 AKKNIFKYQ-SNSDLLVLNKDNELTNSMTGEALG---KVRQFSIKEKLNKGGYLNKD--- 262

Query: 289 QQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++ ++G +   L    L G   V N L A    +   ++   + E       V  R 
Sbjct: 263 ---SLCIDGDEVCKLSEIKLKGMHNVENLLAAF-CALKDDVNIESMREIATTFSGVEHRC 318

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EFV     G + Y D   +S +     + +  + +    V+   GG   +    I+ +  
Sbjct: 319 EFV-REINGVKYYNDSIASSPT-----RTLAGLKAFEKPVILIAGGYDKKIPFDILAEEG 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVA 465
                  ++               E+   +   I   N  +EA+ +A ++  + DV+   
Sbjct: 373 YSKIKTLVLMGATKYKIKEAFENLELKKHVHIPIIMANSLVEAVNSARKVSCRGDVV-TL 431

Query: 466 GKGHETVHIVTNGEKKMSVDCDII 489
                +  +  N E + ++  +I+
Sbjct: 432 SPACASFDMFANFEIRGNMFKEIV 455


>gi|32474077|ref|NP_867071.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rhodopirellula baltica SH 1]
 gi|32444614|emb|CAD74616.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Rhodopirellula baltica SH 1]
          Length = 690

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 138/444 (31%), Gaps = 53/444 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I QA+A+GA  I+             + +  P  +V +T + L+   S    +  + ++ 
Sbjct: 189 ISQALARGAAGILTEQ---------ILPAPIPQAIVADTDRALAEIRSNQTDRPDQKLIT 239

Query: 120 VT--GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSY 176
           +   G++GK+  +     + +             +  S   +       +   L  ALS 
Sbjct: 240 IGIVGSAGKTITSFLTASVLRDIPCRVAYQTDLGSSDSVVTEAGTAKVTNGASLIDALSD 299

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G      E  S  L     D I+L     T L     D+  +        +    E
Sbjct: 300 AVDAGAAVSITEMDSAQLRLGAYDQIELDIVVVTGLDMGGNDFGPSP-------IECAFE 352

Query: 237 LLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           L  +    I+   D  +       A +    V++ G   G  + ++ +          + 
Sbjct: 353 LAGQGGVLIVPESDQRAVSAAHTAAQSQNIEVVTYGVDNGADVSIRTISLEDGTLTAMLR 412

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----- 349
            E +       L           AA + +        + E L KL  +PGRFE +     
Sbjct: 413 HESRAAVMESFLGRGHFAECLAAAAAVGVVTENPLPQIAESLCKLRELPGRFEAITSGDW 472

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR------------------------TITSGRII 385
            T+     + +D   +   ++  L+  R                             ++ 
Sbjct: 473 ETDQNNPVVRLDIGGSPERVKFALQAARKELLQTPASTAPMTLPMHGSSSVNNTKRPKLW 532

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442
            V     + D       G++   + D  ++T  +    +   +   ++ GI         
Sbjct: 533 CVLSVSENDDAETLMQYGRLLESMPDHCVLTCADKDKANFLSMSHGVLDGIQDVAAMRLV 592

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +   AI+ A    +  D+++V G
Sbjct: 593 ADSSRAIQWAHAEASNNDMILVVG 616


>gi|317496836|ref|ZP_07955166.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895848|gb|EFV18000.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 454

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 113/313 (36%), Gaps = 33/313 (10%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K    +  N+  DH+D H T + Y   K  + +    K+   ++ 
Sbjct: 164 EISSFQLE--TIVDFKPDVCAVLNITPDHLDRHGTVEVYAQTKESIGKNQT-KDQVMVLN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            +D  ++ +  RA+     VL         H  K           I   GK         
Sbjct: 221 YEDDTTRAMADRANGT---VLFFSL----HHKIKEGVSMEGDAFIIEENGKKQIVCTLDD 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+    N L A  +  ++G+  + + E +++   V  R E+V T    G  Y + +
Sbjct: 274 VNLLGDHNYENILAAIAVTYSMGVPVSYIKEGIKRFKGVEHRIEYVDTVK--GVAYYNDS 331

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +N  +  +K I+ +     ++  G G D+       +      + ++ ++    P+  
Sbjct: 332 KGTNP-DAAIKGIKAMNRPTWLI--GGGYDKKSTYDEWIEAFDGKVKELILMGVTAPKIA 388

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV----AGKGHETVHIVTNGE 479
           D  K      HG        +  EA+          + +++    A  G     +  N E
Sbjct: 389 DCAK-----THGFDKIKFVDSMEEAVSYIAGKAQDGEAVLLSPACASWG-----MFPNYE 438

Query: 480 KKMSVDCDIIREI 492
            +  +  D +R++
Sbjct: 439 VRGDIFKDCVRKL 451


>gi|316933184|ref|YP_004108166.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
 gi|315600898|gb|ADU43433.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
          Length = 465

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 107/304 (35%), Gaps = 40/304 (13%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V++    L      ++        + V+ +   F      R         +A+TGT+
Sbjct: 67  AALVLTPGVPLTHPAPHWTVLKAQEAGVEVIGDVELFCRE---RRAHAPRAPFVAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  + + +G  +   G   T                     LS    +    
Sbjct: 124 GKSTTTALIAHLLREAGWDTQLGGNIGT-------------------AILSLEPPKDGRV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ +D      +    G   N+  DHID H T + Y   K RL    +     A
Sbjct: 165 HVIEMSSYQIDL--TPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAG-VQDGGTA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGKD 299
           I+  DD + +    R   AG RV+ +  QG         L  +  +       ++  G  
Sbjct: 222 IVGVDDEFGRAAADRIERAGNRVVRMSVQGPVTSGITADLDAIRRVEEGASAEVAKLGGI 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                   G     NA  AA   +A+G+    + + L     +  R E VG   +G  ++
Sbjct: 282 GSLR----GLHNAQNAAAAAAAVLALGVSPEQLQQGLRSFPGLAHRMEQVG--RQGTTLF 335

Query: 360 VDYA 363
           V+ +
Sbjct: 336 VNDS 339


>gi|51892204|ref|YP_074895.1| UDP-N-acetylmuramyl tripeptide synthase [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855893|dbj|BAD40051.1| UDP-N-acetylmuramyl tripeptide synthase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 464

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 66/468 (14%), Positives = 139/468 (29%), Gaps = 93/468 (19%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V++         ++       V  +  + L+        +  E ++A+TGT+GK++ A
Sbjct: 14  ALVTATRVAGRGGTSLPGAVARKVAPDLLRTLAA-------QPREGVVAITGTNGKTTTA 66

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  IC+ +G         + + S      +              L       +     
Sbjct: 67  KMLASICEAAGWDVAHNRAGANLISGVTTAFIQAADWKGRIHRSVGLLEIDEATMP---- 122

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      ++      TN  RD +D     +   +   R    L P    A++ ADD
Sbjct: 123 ------RACQEVRPKVAVVTNFFRDQLDRFGELEHTVDLVARGLAHLAP-GGRAVLNADD 175

Query: 251 AYSKEVMKR--------------------------------AHNAGCRVLSVGYQGKFIH 278
                + +R                                 H    RVL   + G +  
Sbjct: 176 PNCARLGQRRGVEPLYYGLQVDAATAEAASQAADARHCVQCGHPYEYRVLHYAHLGDYRC 235

Query: 279 --------------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                          +          + +       +    +PG + VYNA+ AA   +A
Sbjct: 236 PQCGHRRPEPRVYVDRLWDVDARGSSMRLVTPEGACEVRLQIPGLYNVYNAIAAAAGAVA 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+  A + + LE      GR E +    R  ++++         + +++ +    + + 
Sbjct: 296 LGLPLAAIRQGLETTTSQFGRMEMITIGDR--QVFMALVKNPAGFDSVIQTVMQAEARKN 353

Query: 385 IVVFGCGGDRDQGKRPIMGKI-------ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
           +V+       D      +  +            +  I T    R+ED          G+ 
Sbjct: 354 LVIAINDQYADGTDVSWLWDVDFERLAGHQSEINFVICTGV--RAEDMAVRLK--YAGMD 409

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVL--------------VVAGKGH 469
                 + +   A++  +  +   D+L              ++A KGH
Sbjct: 410 PAKLSVEKDPERAVKQGLRYIQPGDLLYILPTYTAMLQIRGLIARKGH 457


>gi|260201274|ref|ZP_05768765.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 205

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +R +  V+  ++ +  G +F A+ G+   G   +  AIA+GA A++   A   +     
Sbjct: 44  EDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IA 100

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
            R+  P+LV    R  L   A+ +YG   E +  + +TGTSGK++    V+   + +G  
Sbjct: 101 GRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 160

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  IG     +      + LTTP    L   L+ +  +GV  V +
Sbjct: 161 AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVM 205


>gi|288958921|ref|YP_003449262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azospirillum sp.
           B510]
 gi|288911229|dbj|BAI72718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azospirillum sp.
           B510]
          Length = 473

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 121/384 (31%), Gaps = 44/384 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GKS+  + +  I   +G  +   G   T                     L++ 
Sbjct: 113 IGITGTNGKSTTTTLIGHILAAAGRKAAVGGNLGT-------------------PVLTFD 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +E SS+ L+      I        N+  DH+  H     Y  AK  +F   
Sbjct: 154 PIGAGNACVLEMSSYQLEL--THSITFDIAVLLNITPDHLARHGGMDGYIAAKTLIF-HR 210

Query: 238 LPKESPAIIYADDAYSKEV----MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   A+I  DD + +++    +         V + G     ++      + + +   +
Sbjct: 211 QTRPRTAVIGVDDEHCRKIHAGLVAAGDQRIWPVSAHGPVAGGVYAADGWLVDDTEGEAV 270

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            V   +   L  L G     NA  A   C A GI +  ++  +     +  R + VGT  
Sbjct: 271 RV--VELSTLPTLLGAHNWQNAAAAFAACKAAGIPAPAIVAAMASFPGLAHRQQLVGTLD 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A  +++ E  L     I           G  +D G   +   +        
Sbjct: 329 GVRFVNDSKATNADATEKALATFDPIYW------ILGGQAKDTGLNGLEPYMGRVRHAFL 382

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKGHE 470
           I        E  E+  A +      +   G    A   A EM   +   D  V+      
Sbjct: 383 I-------GEAQEQFAAWLDTQSVAYTRCGTLDIATAKAAEMAVAERLTDACVLLSPACA 435

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           +     N EK+       +  I+G
Sbjct: 436 SWDQFANFEKRGEAFAACVVSIIG 459


>gi|251811443|ref|ZP_04825916.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805033|gb|EES57690.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 552

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 13/229 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           IK      T +G  H+   +        K  +F+ L P E  AII  D  +S  +++RA 
Sbjct: 58  IKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTP-EGVAIINKDTLHSDILIERAK 116

Query: 262 NAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                V++         I  K +        +TI   G+ + +      +  V N+L   
Sbjct: 117 QNTSNVITYSTHDSSATICPKSIQYSKGYTVITIDFNGQKYTYRINSISDGMVENSLATF 176

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTS------NSLEMI 372
                + I     LE+L                +   ++  +D  H +      N+++  
Sbjct: 177 ATLSHLDIPLERALENLSTFKPFEKVLNLKEVETPNYKVNLIDDTHNASLPAMINAIKAF 236

Query: 373 LKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDD 418
               +     +II +      G         ++  +    AD  +  DD
Sbjct: 237 NTQTKFFKGNKIIAIGQISDLGKHSKSLHLQLVDVLENSNADYILCMDD 285


>gi|312871945|ref|ZP_07732027.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092522|gb|EFQ50884.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 460

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 121/389 (31%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I +               I     +  L   +   L   +S     GV  +         
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK-------- 185

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +  I   + N+   HIDYH+T + Y  AK+R+  +   K    I   D     
Sbjct: 186 -----PKVAAIVDIYNNV---HIDYHKTFENYVAAKLRI-TQNQDKSDYFIANFDQKNIL 236

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E       A     S        ++ +           + +          +PG     N
Sbjct: 237 EQELSLTKAHVVTFSEESNQADYYIGEQYLESQADHEIMKISD------IKIPGRHNQQN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +LVA  +   +G     +   L        R ++V T +   RIY D   T+  +E    
Sbjct: 291 SLVAIAISKLMGASDEDIRSVLSTFTGAKHRLQYVMTYNN-RRIYNDSKSTN--IEAASV 347

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I + +     V+   G DR      ++  +   +  I +  +      D  +       
Sbjct: 348 AIPSFSQPE--VLIAGGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAAR-----KA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A ++ N  DVL+
Sbjct: 401 GIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|119632730|gb|ABL84372.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus suis]
          Length = 375

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 102/348 (29%), Gaps = 42/348 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130
           +++   L   +A    N   +   + + +         G+  +    L V G  GK+S  
Sbjct: 59  ITADVELIAGNAFRPDNNVEIAYADAQGYTYKRYHEFLGEFMKGFTSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +SF IG  +   S      +                            
Sbjct: 119 GLLAHVMRNITDTSFLIGDGTGRGSANAQYFVFESDEYERH------------------- 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY  + +  FNA     +++        ++ +D
Sbjct: 160 --------FAPYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQVKN---ALFVFGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              + +   A      +   G +         +    +  Q  +    ++  +F  P  G
Sbjct: 209 EQLRRITANAP-----IYYYGLEDNNDFVAYDLKPSTSGSQFKVRHGEEELGEFQIPTFG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NA          G D  LV EHL+    V  RF     N     I  D+AH    
Sbjct: 264 KHNVMNATAVIANLYIAGFDLQLVAEHLKTFGGVKRRFTEKIVND--TVIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   +   R    S  ++ +F                 AL+ AD   +
Sbjct: 322 IIATIDAARQKYPSKELVAIFQPHTFTRTIALLDEFADALNGADAVYL 369


>gi|260589604|ref|ZP_05855517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
           hansenii DSM 20583]
 gi|260540172|gb|EEX20741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
           hansenii DSM 20583]
          Length = 457

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 105/294 (35%), Gaps = 24/294 (8%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + LS    ++   E SS  L+   +D       +  N+  DH++ H T + Y   K  L 
Sbjct: 154 AALSMTEDSYTVAEISSFQLE--TIDTFAPKVSAILNITEDHLNRHHTMEEYIRVK-ELI 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVT 292
                KE   I+  +D   +   +R         S     +G F+    +C   + + + 
Sbjct: 211 TANQTKEDYCILNYEDEVLRAFGERCPAKTVFFSSERKLEKGAFLDGDAICLKTDTETLE 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I   G+       + G+    N + A+ +    G+   ++ + + +   V  R EFV   
Sbjct: 271 IVKTGE-----LKILGKHNYENVMAASAMAYYTGVPVEVIHKAITEFRAVAHRIEFVDEI 325

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +             ++    ++ +   T     ++ G G D++      +      +  +
Sbjct: 326 NGIAYYNDSKGTNPDAAIKGIQAMNRPT-----LLIGGGYDKESSYEEWIQSFDGKVKYL 380

Query: 413 AIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++       +  EKI  E+ H  G    I   N  EA+    +   K D +++
Sbjct: 381 VLI------GQTREKI-QEVAHKCGFVNTILADNLEEAVSMCTQKAEKGDAVLL 427


>gi|322411163|gb|EFY02071.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 443

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 103/343 (30%), Gaps = 47/343 (13%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +  + +  I    P        +FL  F  +           V G  GK+S    + 
Sbjct: 72  REDNNNEVAYAIHHEIPF---KRYHEFLGDFMKQFI------SFGVAGAHGKTSTTGLLS 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + +    +S+ IG  +   S      +                         E   H +
Sbjct: 123 HVLKNITDTSYLIGDGTGRGSANAQYFVFESD---------------------EYERHFM 161

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             H            TN+  DH DY        +A     +++   +    +Y +D   +
Sbjct: 162 PYH------PEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQV---KKALFVYGED---Q 209

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVY 313
           E+ K   NA         +  F+    V    +    T+  +G+    F  P  G   + 
Sbjct: 210 ELKKITVNAPIYYYGFEEENDFV-ASDVIRTTHGSDFTVKHDGQIIGRFHVPAYGRHNIL 268

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA          GID  LV EHL+    V  RF     N     I  D+AH    +   +
Sbjct: 269 NATAVIANLFVAGIDMELVAEHLKTFSGVKRRFTEKLINE--TIIIDDFAHHPTEIVATI 326

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              R    +  I+ +F                +AL+ AD   +
Sbjct: 327 DAARQKYPNKEIVAIFQPHTFTRTIALLDDFALALNEADSVYL 369


>gi|308062061|gb|ADO03949.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Cuz20]
          Length = 493

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 141/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S+ +F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSIKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSDI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   + G+F  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 GSVWESFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|220935613|ref|YP_002514512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996923|gb|ACL73525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 453

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 116/371 (31%), Gaps = 32/371 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +       +LAV GT GK++ +S +  I + +GL    +     I    ++  +
Sbjct: 94  QWLAEHVLKD--RWVLAVAGTHGKTTTSSMLAWILEYAGLRPGFL-----IGGVPENFGV 146

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYH 220
           +           + L       V  +         R   +  +       NL  DH D  
Sbjct: 147 S-----------ARLGEAPFFVVEADEYDTAFFDKRSKFVHYRPRTLVLNNLEYDHADIF 195

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
               A       L    +P E   +  ADD     V+ +      +  SV   G +    
Sbjct: 196 PDLAAIERQFHHLV-RTVPGEGLIVRNADDENLSRVLSQGCWTPVQGFSVAGHGDWQGRP 254

Query: 281 KVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +     +  +  +   G+   +  + + G   + NAL A       G+     +  L K 
Sbjct: 255 Q---SPDASRFQVLYRGESQGEVCWEMIGRHNMANALAALAAARHAGVPVPQGIHALAKF 311

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R +  G  S G ++Y D+AH   ++   L+ +R       I+             
Sbjct: 312 QSVKRRLQLRGERS-GIQVYDDFAHHPTAIATTLEALRARVGAARIIAVLDPRSNTMRMG 370

Query: 400 PIMGKIALD--LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
               ++A     AD   +        D + +   + HG+                +  + 
Sbjct: 371 VHRDRLAGSLAAADRVFLHAPADLGWDSQVVIDALPHGLACADTDALLA----ALLAEVR 426

Query: 458 KQDVLVVAGKG 468
             D +++   G
Sbjct: 427 PGDHVLIMSNG 437


>gi|192292416|ref|YP_001993021.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286165|gb|ACF02546.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris TIE-1]
          Length = 469

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 110/306 (35%), Gaps = 40/306 (13%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V++    L      ++        + V+ +   F      R         +A+TGT+
Sbjct: 67  AALVLTPGVPLTHPAPHWTVLKAQEAGVEVIGDVELFCRE---RKAHAPRAPFVAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  + + +G  +   G   T                     LS    +    
Sbjct: 124 GKSTTTALIAHLLREAGWDTQLGGNIGT-------------------AILSLEPPKDGRV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ +D      +    G   N+  DHID H T + Y   K RL    +     +
Sbjct: 165 HVIEMSSYQIDL--TPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAG-VQDGGTS 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGKD 299
           II  DD + +    R   AG RV+ +  QG         L+ +  I   +   ++  G  
Sbjct: 222 IIGVDDEFGRAAADRIERAGKRVVRMSVQGPVQSGITADLETIRRIDGGKSTEVAKLGGI 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGR 357
                   G     NA  AA   +A+G+   ++ + L     +  R E VG     +G  
Sbjct: 282 GSLR----GLHNAQNAAAAAAAVLALGVSPEVLQQGLRSFPGLAHRMEQVGRQVGEKGTT 337

Query: 358 IYVDYA 363
           ++V+ +
Sbjct: 338 LFVNDS 343


>gi|157412360|ref|YP_001483226.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157386935|gb|ABV49640.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 468

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 123/370 (33%), Gaps = 50/370 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G+ GK+S ++F+  I +     S  I     I  +  ++     +  YL   +   
Sbjct: 119 FAVAGSHGKTSTSTFLSTILELCTHDSSSI-TGGIIPIY--NSNCHLENTKYLVAEVDE- 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                ++  K   G   N+  DH D+        ++    F   
Sbjct: 175 -----------------SDGTINQYKSDIGIINNIDFDHCDHFSDLNEVISS----FRSF 213

Query: 238 LPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  ++  D   S+       +  N   + ++       I+ K     + +    +S
Sbjct: 214 AKNSKKLLLNFDCETSRNNFFSNSKWSNTTTKNVAYAIIPTQINSKYTIGKYYEHGNFVS 273

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +   P+PG   + N   A      IG+D   +  +++ L +   RFEF G  + 
Sbjct: 274 ------NLNIPIPGLHNLSNITAAIAASRMIGVDFIEIKRNIKYLKLPKKRFEFRGQINE 327

Query: 355 GGRIYVDYAHTSNSLEMIL---------KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              +Y DYAH  N ++  +         KN       R+I +F         +       
Sbjct: 328 -RLLYDDYAHHPNEIKETIKLGKLFIKQKNNNEFQKSRLIAIFQPHRYSRVKQFTREFAE 386

Query: 406 ALDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQ 459
            L  AD+  VT      E+ E     KI  ++I+     +   N    I     E+  K 
Sbjct: 387 ELSKADVIYVTSIYGAGEENEDRITSKIITDLIYKKNKNVCYINNYHKITENFYELTQKG 446

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 447 DLILNMGAGD 456


>gi|168333725|ref|ZP_02691978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 456

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 97/279 (34%), Gaps = 16/279 (5%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           V A         ++ +     S  N+  DH++ H T + Y  AK R+FE    K    I+
Sbjct: 158 VIAELSSFQLETIETLSCQICSILNITPDHLNRHGTMENYMAAKYRIFEN-GGKNVKVIL 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +DA   +++ +         S     K ++L+    + N       +   D      +
Sbjct: 217 NKEDAELAKLIGKTGKTELLFSSKESVEKGVYLENGALVDNTLGDNFVICNID---ELHI 273

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NAL A  +  A G+   ++   L     V  R E+V T S   + Y D   T+
Sbjct: 274 LGVHNYENALAAILMARAYGVPREIIRSVLLDFRGVAHRIEYVTTVSD-VKFYNDSKATN 332

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
               +       +     I + G G D+       +      +A + I+       E   
Sbjct: 333 ----VGAAVPGLLAMQSKIRLIGGGLDKHIEFDEWVELFEGRVAKLYII------GETTN 382

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +I      HG   +       EAI+ A     + + +++
Sbjct: 383 QIIETCKKHGFHNYEAFETFEEAIKAAYNEAKRGEXVLL 421


>gi|300811311|ref|ZP_07091808.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497675|gb|EFK32700.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 460

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 123/353 (34%), Gaps = 40/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQI----CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     QQI     Q+ G  ++ +G        ++           L
Sbjct: 113 SPYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S     GVT +                +  I   + N+   H+DYH+T   Y +AK
Sbjct: 171 VVEMSSFQLMGVTDIE-------------PKVAAIVDIYNNV---HLDYHKTFDNYVDAK 214

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +             +   D        ++A  A     S        ++ +   +H +++
Sbjct: 215 LN-VGRFQKASDYFLANFDQKDILTREEKATKAKILTFSENDPAADFYIGQDYLMHGEEK 273

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +    +         LPG   + N+LVA G+   +G     +   L        R ++V 
Sbjct: 274 MMKIAD-------IKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQYVT 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++Y D   T+  +E     I++       V+   G DR      ++        
Sbjct: 327 T-LDGVKVYNDSKSTN--IEAATVAIQSFKQPE--VLLAGGLDRGFLFDSLVD--LFKKH 379

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             AIVT    R    +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 380 VKAIVTYGETRYLLADAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|307731024|ref|YP_003908248.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1003]
 gi|307585559|gb|ADN58957.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1003]
          Length = 464

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 117/360 (32%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 150 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAI-ETQFHHL 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P+    +    +   + V+ R       V   G QG +        +   ++  + 
Sbjct: 209 IRTVPRIGRVVTNGREDALERVLTR--GCWSEVERFGVQGGWETQPAEDGVPVDERFAVY 266

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +    + + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 267 HNAERVGVVEWQVQGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVKRRMEVRG-SV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 326 DGVTVYDDFAHHPTAIETTVAGLRARVGRDNTRILAVLEPRSNTMKLGVMKAQLPASLAD 385

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
              +     P   D       E +  +    +  + ++A ++  +      D ++V   G
Sbjct: 386 ADLVFGYGAPSGRDALGWNLGEALAPLGNKAQAFDNLDALVKAVVHAARPGDQVLVMSNG 445


>gi|241668949|ref|ZP_04756527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877481|ref|ZP_05250191.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843502|gb|EET21916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 414

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 133/392 (33%), Gaps = 65/392 (16%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS    L      + S     +V +   F               ++AVTG++GKS++ + 
Sbjct: 60  VSPGIPLNKSPYRVLSKFKQKIVSDIDLFYQSI-----RNTKAKMIAVTGSNGKSTIVTM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  + +  G  S  +G   T        +                      +  VE SS 
Sbjct: 115 LDFVLRNLGYKSILVGNIGTPPLNKIGEKF--------------------DYCVVEVSSF 154

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +D    + ++   G   N+  DH+D ++  + Y  +K+ L                   
Sbjct: 155 QIDLF--NSVEFDLGCVVNVSPDHLDRYKNYEEYKQSKLNL------------------- 193

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +  K           + Y G++  ++        + + I+           L GE  +
Sbjct: 194 -AKFSKDFFVYDVHNTGIKYAGEYQIVRGSIYKDTTKLLDIT--------ETNLFGEHNL 244

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N +V   +    GID +  +  ++K   +  R E V   +  G  Y++ +  +N +   
Sbjct: 245 ENIIVVLNIFDRFGIDISKAVAAIKKFKGLKHRCEIV--KNIAGVTYINDSKGTN-VGAT 301

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  + +ITS + I++   G  +      +   +A        +       +D E I   I
Sbjct: 302 IAALNSITSSKNIILLLGGVAKGGDFSLMSKSLA-KYVKYVYL-----YGQDKEYIENYI 355

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  +    +  +A R A +     +++++
Sbjct: 356 KD-LCQYQICNDMKDAFRLASQKAQDSEIVLL 386


>gi|254526648|ref|ZP_05138700.1| UDP-N-acetylmuramate--alanine ligase [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538072|gb|EEE40525.1| UDP-N-acetylmuramate--alanine ligase [Prochlorococcus marinus str.
           MIT 9202]
          Length = 468

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 123/370 (33%), Gaps = 50/370 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G+ GK+S ++F+  I +     S  I     I  +  ++     +  YL   +   
Sbjct: 119 FAVAGSHGKTSTSTFLSTILELCTHDSSSI-TGGIIPIY--NSNCHLENTKYLVAEVDE- 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                ++  K   G   N+  DH D+        ++    F   
Sbjct: 175 -----------------SDGTINQYKSDIGIINNIDFDHCDHFSDLNEVISS----FRSF 213

Query: 238 LPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  ++  D   S+       +  N   + ++       I+ K     + +    +S
Sbjct: 214 AKNSKKLLLNFDCETSRNNFFSNSKWSNTTTKNVAYAIIPTQINSKYTIGKYYEHGNFVS 273

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +   P+PG   + N   A      IG+D   +  +++ L +   RFEF G  + 
Sbjct: 274 ------NLNIPIPGLHNLSNITAAIAASRMIGVDFIEIKRNIKYLKLPKKRFEFRGQINE 327

Query: 355 GGRIYVDYAHTSNSLEMILKNIR---------TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              +Y DYAH  N ++  +K  +              R+I +F         +       
Sbjct: 328 -RLLYDDYAHHPNEIKETIKLGKLFIKQKHNNECQKSRLIAIFQPHRYSRVKQFTKEFAE 386

Query: 406 ALDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQ 459
            L  AD+  VT      E+ E     KI  ++I+     +   N    I     E+  K 
Sbjct: 387 ELSKADVIYVTSIYGAGEENEDRITSKIITDLIYKKNKNVCYINNYHKITENFYELTQKG 446

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 447 DLILNMGAGD 456


>gi|313123440|ref|YP_004033699.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280003|gb|ADQ60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 460

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 124/353 (35%), Gaps = 40/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQI----CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     QQI     Q+ G  ++ +G        ++           L
Sbjct: 113 SPYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S     GVT +                +  I   + N+   H+DYH+T   Y +AK
Sbjct: 171 VVEMSSFQLMGVTDIE-------------PKVAAIVDIYNNV---HLDYHKTFDNYVDAK 214

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + +           +   D        ++A  A     S        ++ +   +H +++
Sbjct: 215 LNVC-RFQKASDYFLANFDQKDILTREEKATKAKILTFSENDPAADFYIGQDYLMHGEEK 273

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +    +         LPG   + N+LVA G+   +G     +   L        R ++V 
Sbjct: 274 MMKIAD-------IKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQYVT 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++Y D   T+  +E     I++       V+   G DR      ++        
Sbjct: 327 T-LDGVKVYNDSKSTN--IEAATVAIQSFKQPE--VLLAGGLDRGFVFDSLVD--LFKKH 379

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             AIVT    R    +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 380 VKAIVTYGETRYLLADAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|311895540|dbj|BAJ27948.1| putative UDP-N-acetylmuramoylalanine--D- glutamate ligase
           [Kitasatospora setae KM-6054]
          Length = 480

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 141/415 (33%), Gaps = 52/415 (12%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G   +V S  ++     F+A   +  P+    +      L A       P   LAVTGT+
Sbjct: 74  GTALVVTSPGWAPDGPLFAAAAAAGVPVW--GDVELAWRLRAPHPATGEPAPWLAVTGTN 131

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I   +G  +  +G                     +    + L+ +    
Sbjct: 132 GKTTTVQMLASILTAAGKRTAAVGNVG------------------VPVLDAVLAEEPYDV 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L  H    +++ +G+  NL  DH+D+H + +AY  AK R++E    + +  
Sbjct: 174 LAVELSSYQL--HWAPSLRVHSGAVLNLAPDHLDWHGSMEAYAAAKGRIYEG--NQVACV 229

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
              AD A    V +     GCR +  G     +    V       +  ++        L 
Sbjct: 230 YNLADPATEALVREADVEEGCRAVGFGLDAPSVSNLGVVDGLLVDRAFVADRANSAAELG 289

Query: 304 ----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                  P    + NAL AA L  A G+D+  V + L        R   V        + 
Sbjct: 290 AVADVNPPAPHNIANALAAAALARAYGVDAKAVRDGLRAFTPDAHRIAHVAEIDGVAYVN 349

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A  +++    L   R        VV+  GG         +   A      A++    
Sbjct: 350 DSKATNTHAAAASLAAYRP-------VVWIAGGLAKGATFDELVAAAAPRLRAAVLI--- 399

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIRTAI----EMLNKQDVLVVA 465
              +D   IR  +    P              EA+   +        K D +++A
Sbjct: 400 --GQDRGLIREALERHAPEVPVLEPAPGQTGAEAMTAIVAAAAAAAEKGDTVLLA 452


>gi|238020915|ref|ZP_04601341.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
 gi|237867895|gb|EEP68901.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
          Length = 443

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 133/334 (39%), Gaps = 46/334 (13%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++ A  L  +  + I+A+TG++GK++  S V  +CQ+SGL +   G   T          
Sbjct: 97  AILADLLRHQRDQ-IIAITGSNGKTTTTSLVGHLCQQSGLDTVVAGNIGT---------- 145

Query: 163 TTPSPIYLAKALSYLSSQG--VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                       ++L  QG       +E SS  L+      +   A +  N+  DH++ +
Sbjct: 146 --------PVLDAWLQRQGKSADVWVLELSSFQLE--TTPCLAAAAAACLNISEDHLNRY 195

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y   K ++F          I+ ADD + + + +         L+   Q     L 
Sbjct: 196 DDLLDYARTKDQIFNGC----RTQILNADDPFCRAMHRPEQQTRYFSLA---QAADYWLD 248

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            V     ++      + +      PL G     NAL A  LC AIGI  + +++H++   
Sbjct: 249 PVSGSLKQRDSDFMAQSQ-----IPLQGNHNTANALAALALCEAIGIPRSELVQHIQTFK 303

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R E +G  ++ G +Y+D +  +N +   +  I  +     IV+   G  + Q   P
Sbjct: 304 GLPHRVEKIG--AKDGVVYIDDSKGTN-VGATVAAIAGLPQK--IVLIAGGQGKGQDFAP 358

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +   +      + ++  D P      KI AE+  
Sbjct: 359 LASVLQDKARAVFLIGVDAP------KIAAELAA 386


>gi|207744339|ref|YP_002260731.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-me
           so-diaminopimelate ligase protein [Ralstonia
           solanacearum IPO1609]
 gi|206595744|emb|CAQ62671.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase protein [Ralstonia solanacearum IPO1609]
          Length = 461

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 132/411 (32%), Gaps = 40/411 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+  V+ +  S  +       +  +  V             +  +  + +LAV GT GK
Sbjct: 61  GADLYVIGNVISRGNPLMEAILDRNLPYVSGP----QWLGDNVLRQ--KWVLAVAGTHGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I Q +G     +     +    ++  L+           + L++     + 
Sbjct: 115 TTTTSMLAWILQDAGYDPGFL-----VGGVPRNFGLS-----------ARLTASDFFVIE 158

Query: 187 VEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +         R   +  +       NL  DH D      A       L    +P +   
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRA-VPGQGRV 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++   +   K V+  A      V   G   +      +  + +     + ++G+      
Sbjct: 218 LVNGREESLKRVL--ARGCWSEVELFG--AEDGAGWAIANLGDDDSFDVVLDGQVQGRVR 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PL G+    NAL A      +G+  A  +E L +   V  R E  GT   G  +Y D+A
Sbjct: 274 WPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-VDGVTVYDDFA 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPR 421
           H   ++   +  +R       I+            G        +L+ AD          
Sbjct: 333 HHPTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAASG 392

Query: 422 SE----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    D     A +      F + G  ++A+  A       D ++V   G
Sbjct: 393 RDVLGWDLAGALAPLGEQARAFSDLGALVDAVTAA---ARPGDHVLVMSNG 440


>gi|114777864|ref|ZP_01452795.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551855|gb|EAU54395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mariprofundus
           ferrooxydans PV-1]
          Length = 455

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 106/353 (30%), Gaps = 42/353 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS   S +  +        I V  +    L LF    +G    +I+AVTGT+GK++  
Sbjct: 70  VIVSPGISWRHPALVQVREAGIPVYGD----LQLFGEHFHG----DIIAVTGTNGKTTTV 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +          I     I                  K +  L + G     V   
Sbjct: 122 SLISTMLDTL---PGGIEAGGNIG-----------------KPMLELIADGDVPERVVLE 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                  R + I        N+  DH D H   QAY  AK+RLF      +   +    D
Sbjct: 162 LSSFQLERAEPIHPRWAVLLNVQPDHADMHVDMQAYRAAKLRLFARQGEGDKATLP--GD 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
           A   ++       G  V   G          V                    +       
Sbjct: 220 AEWDDLAAELRGRGAYVRRFGVGSAESLDCGVQMTEQGAWELFWHHFDTVYTIDASQLQT 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  Q  N  VA       G+  A++ + L     +  R + +G            A   
Sbjct: 280 RGRHQHLNLAVAGQAAADFGLSPAVIRQSLTSFRGLQHRLQSLGEVQGRQWFNDSKATNP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDR-DQGKRPIMGKIALDLADIAIVTDD 418
           ++    L++          V++ CGG R       +   +A  +A + +   D
Sbjct: 340 DAARAALESFEQ-------VIWVCGGLRKGLDVSELKDAVAAHVALMLVTGSD 385


>gi|302767366|ref|XP_002967103.1| hypothetical protein SELMODRAFT_408505 [Selaginella moellendorffii]
 gi|300165094|gb|EFJ31702.1| hypothetical protein SELMODRAFT_408505 [Selaginella moellendorffii]
          Length = 521

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 137/436 (31%), Gaps = 64/436 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VVSSA   ++          + V+   +++L              ++AV GT GKS+ 
Sbjct: 99  AVVVSSAIPAENEEVVAARRQGLRVIKR-KEWLGEITEDY------ELIAVAGTHGKSTT 151

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  + Q                SF+ D      + +      +    +G   V    
Sbjct: 152 TAMLTVVLQ----------------SFSDDITAIVGADVPQLAGGNMAYGKGGRFVLEAD 195

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G       G+       T++  +H+D     +A      + F   +  +   II  D
Sbjct: 196 EYDGCFL----GVSPSLAIVTSVEWEHVDMFPD-EASVREMFKHFISRIKPDGCLIICGD 250

Query: 250 DAYSKEV---MKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
            A ++ +   +++      R L+ G   Q  +  +  V  I            +      
Sbjct: 251 SAGTRSLITSLEQYSKQASRKLTYGLHEQNDWRAIMLVPNILGGTDYVAVYRNRPMARVS 310

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK-----------------LHVVPGRF 346
             LPG + V N+L        +        +   +                    +  RF
Sbjct: 311 LKLPGTYNVLNSLAVLAAVSLLAFKGKGSCDESGQLKAMAVAAQAASSALQSFQGLRRRF 370

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E+VGT  R   IY DYAH    +  +L+  R       I VVF                 
Sbjct: 371 EYVGTVRR-CDIYDDYAHHPTEVRAVLQAARQRFDKQPIWVVFQPHTYSRIANLLQDFAP 429

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR------TAIE--MLN 457
           A   A+      +N   E        +I G P  +      E I       TA+E   +N
Sbjct: 430 AFSGANRIFSARENNVWELSGADLVSVITG-PPAMFIPTLDEVIERLSWELTALEENEVN 488

Query: 458 KQD--VLVVAGKGHET 471
           K    VL+  G G  T
Sbjct: 489 KGGNIVLLTLGAGDVT 504


>gi|253998170|ref|YP_003050233.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
 gi|253984849|gb|ACT49706.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
          Length = 460

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 127/352 (36%), Gaps = 43/352 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+S   +L +          I VV +   F        +      ++A+TG +GK++V 
Sbjct: 72  VVISPGVALAEPEVQQALANGIQVVGDVELFAQ------FRPRSSKVIAITGANGKTTVT 125

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV-THVSVEA 189
           + V ++C+ +GL +   G                     +  AL  + + G      +E 
Sbjct: 126 TLVGEMCKAAGLKTVVAGNIGLP----------------VLDALRQVETDGAPDVYVLEL 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +   A +  N+  DH+D +     Y  AK R+    L      ++  +
Sbjct: 170 SSFQLE--TTSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARI----LKGAGVQVLNRE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DA+ + +           L +  +        L+    +       + VE         +
Sbjct: 224 DAWCRNMALPDQPMVTFGLDLPVESHAYGLLALRDQLWLAQGAHPILHVE------ELRI 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     NAL A  LC AIG+D A +   L +   +P R E+V  +      Y D   T+
Sbjct: 278 PGLHNAANALAALALCRAIGVDWAPLQHVLREFKGLPHRVEWV-ADLHDIAFYDDSKGTN 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             +      +  +     +V+   G  + Q   P+   +  +   + ++  D
Sbjct: 337 --VGATCAALAGLPRK--VVLIAGGDGKGQDFSPLREPVDQNARAVVLIGRD 384


>gi|254786999|ref|YP_003074428.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Teredinibacter
           turnerae T7901]
 gi|259509791|sp|C5BP36|MURD_TERTT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|237684910|gb|ACR12174.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Teredinibacter
           turnerae T7901]
          Length = 453

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 127/400 (31%), Gaps = 52/400 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S     +           I +V +   FL              ++ +TG++GKS
Sbjct: 74  AAEIVLSPGVDRRTDFIQAALKNNISIVGDIELFLREV--------QVPVVGITGSNGKS 125

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + +  +  ++G  +   G                         +     +      +
Sbjct: 126 TVTALMAAVGAKAGFKTCAAGNIGL--------------------PVLDALQENAELYIL 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+     G+        N+  DH+D +     Y  AK R++          +  
Sbjct: 166 ELSSFQLESVSRPGL--TVACMLNVSEDHMDRYNRFVDYCMAKQRIY----FGAQNVVYN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD  ++  +          LS   +     F        +   +   I+++        
Sbjct: 220 IDDKLTQPPIVDGVARRGFSLSKPIEEGESAFYFSADTGNLCAAKDNLINID------QI 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   V N L    +  A+ I  A     +++   +  R ++V    RG     D   
Sbjct: 274 KIFGRHNVANVLAVFAMADALNITRAATCAAVQEFSGLDHRCQWV-AKKRGVTFINDSKA 332

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T+  +      I  +++    ++   GGD         GK+      + I+        D
Sbjct: 333 TN--VGAAQAAIAGLSASFKRILLIAGGDGKDANFFSFGKLVDAHVAVLILM-----GRD 385

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              I A+ +      ++     EA+  A     + D++++
Sbjct: 386 AGAI-ADCVSDTTPVVQAQTMTEAVEVAFSSAEEGDLVLL 424


>gi|225867925|ref|YP_002743873.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
 gi|259509782|sp|C0MGF5|MURC_STRS7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225701201|emb|CAW98126.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 443

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 103/348 (29%), Gaps = 46/348 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +A+   + S    +    L      +FL  F  +         L V G  GK+S  
Sbjct: 65  LIAGNAFREDNNSEVAYAMRHQLPFKRYHEFLGEFMKQF------TSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +S+ IG  +     A D R          +                  
Sbjct: 119 GLLSHVLKHMAATSYLIGDGT--GHGAADARYFVFESDEYERHF--------------MP 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H                 TN+  DH DY       FNA     +++   +    +Y +D
Sbjct: 163 YH-----------PEYSIITNIDFDHPDYFTGLDDVFNAFNDYAKQV---KKALFVYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPG 308
              +++     ++   +   G++         +    N     +    K    F  P  G
Sbjct: 209 EELRKI-----SSPAPIYYYGFEDTDDFVAFDITRTTNGSDFKVRHHHKLIGQFHLPAYG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA          G D  LV EHL+    V  RF     N     I  D+AH    
Sbjct: 264 RHNILNATAVIANLFIAGFDMKLVAEHLKSFSGVKRRFTEKVIND--TIIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   L   R    +  II +F                 AL+ AD   +
Sbjct: 322 IIATLDAARQKYPNKEIIAIFQPHTFTRTIALLDDFAHALNEADSVYL 369


>gi|170288515|ref|YP_001738753.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga sp. RQ2]
 gi|229620441|sp|B1L9S2|MURC_THESQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170176018|gb|ACB09070.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga sp. RQ2]
          Length = 457

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 118/350 (33%), Gaps = 42/350 (12%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASFVQQICQ 138
           +  +R + P +V     +         +        +   AVTGT GK++  + V  + +
Sbjct: 66  TPAVRDDNPEIVRARMERVPIENRLHYFRDILKREKKEEFAVTGTDGKTTTTAMVAHVLK 125

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
               S       +       D+             +  L                     
Sbjct: 126 HLKKS------PTVFLGGIMDSLEHGNYEKGNGPVVYELDESEEFFSEF----------- 168

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                      TN   DH++ +  +   Y +A    FE++       + +A+D  +  + 
Sbjct: 169 ----SPNYLIITNARGDHLENYGNSLSRYRSA----FEKISRNTDLVVTFAEDELTSHLG 220

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNAL 316
                     ++ G +     L+   A   +Q+  +   GK + +    +PG   V NAL
Sbjct: 221 D---------VTFGVKKGTYTLEMRSASRAEQKAVVEKNGKRYLELKLKVPGFHNVLNAL 271

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILKN 375
               L  ++G D A VLE LE+   V  RF     +      +  DYAHT + +  +L+ 
Sbjct: 272 AVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQT 331

Query: 376 IRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            + +     IVV F         +       AL LAD  +VT+     E+
Sbjct: 332 AKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEE 381


>gi|323466805|gb|ADX70492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           helveticus H10]
          Length = 459

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 117/357 (32%), Gaps = 49/357 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I     Q+SG  ++ +G      S               
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD------ 166

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF----TNLGRDHIDYHQTQQAY 226
                         + VE SS  L    +  I     +      N+   H+DYH+T + Y
Sbjct: 167 ------------DILVVEISSFQLL--GVTDIDPKVAAIVDIYNNV---HLDYHKTFENY 209

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            NAK+         +   I   D        K    A  +  S         +       
Sbjct: 210 VNAKLN-VTRTQNSDDYFIANYDQKDILAKEKEVTPAKMQTFSETDSSADYFIGDEYLES 268

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +++   V+         LPG   + N+LVA  +   +G D+  +   L        R 
Sbjct: 269 QNEKIMKIVD-------IKLPGIHNLQNSLVAIAISKVMGADNDDIAAVLSTFTGAKHRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           ++V T   G ++Y D   T+  +E     I +       V+   G DR      ++    
Sbjct: 322 QYVTT-LDGRKVYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFLFDDLVPLFK 376

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             +  I +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 377 KHVKSIVLYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELSEPDDVIL 428


>gi|169829638|ref|YP_001699796.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus sphaericus
           C3-41]
 gi|229620041|sp|B1HX90|MURC_LYSSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168994126|gb|ACA41666.1| UDP-N-acetylmuramate--L-alanine ligase [Lysinibacillus sphaericus
           C3-41]
          Length = 437

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 97/302 (32%), Gaps = 38/302 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG  GK+S    +  +      +S+ IG   T +  A  +     +  Y    L+Y 
Sbjct: 104 IAITGAHGKTSTTGLMAHVVGGYKPTSYLIG-DGTGAGHANADFFVMEACEYRRHFLAY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY    +  ++A   L  ++
Sbjct: 162 -------------------------NPDYAVMTNIDFDHPDYFANIEDVYSAFQSLALQV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +   I   DD   + +  +           G +  F   + V       +  + V  
Sbjct: 197 ---KKAIIACGDDEQLQRIQAKVPVVY---YGFGSENDF-EARNVEKTTEGTKFDVFVRN 249

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + +  F  PL G+  + N L    LC   GI   ++ + L     V  RF          
Sbjct: 250 EFYSTFFIPLFGDHAILNTLAVITLCEYEGISPDIIQDRLHTYKGVKRRFTETDIGDN-- 307

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +   +++ R       ++ +F                 +L LAD A +
Sbjct: 308 VLIDDYAHHPTEIRATIQSARQKFPDRELVAIFQPHTFTRTQAFLQDFADSLSLADTAYL 367

Query: 416 TD 417
            D
Sbjct: 368 CD 369


>gi|207721547|ref|YP_002251986.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-me
           so-diaminopimelate ligase protein [Ralstonia
           solanacearum MolK2]
 gi|206586708|emb|CAQ17293.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase protein [Ralstonia solanacearum MolK2]
          Length = 461

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 133/411 (32%), Gaps = 40/411 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+  V+ +  S  +       +  +  V             +  +  + +LAV GT GK
Sbjct: 61  GADLYVIGNVISRGNPLMEAILDRNLPYVSGP----QWLGDNVLRQ--KWVLAVAGTHGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I Q +G     +     +    ++  L+           + L++     + 
Sbjct: 115 TTTTSMLAWILQDAGYDPGFL-----VGGVPRNFGLS-----------ARLTASDFFVIE 158

Query: 187 VEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +         R   +  +       NL  DH D      A    +       +P +   
Sbjct: 159 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHLVRTVPGQGRV 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++   +   K V+  A      V   G   +      +  + +     + ++G+      
Sbjct: 218 LVNGREESLKRVL--ARGCWSEVELFG--AEDGAGWAIANLGDDDSFDVVLDGQVQGRVR 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PL G+    NAL A      +G+  A  +E L +   V  R E  GT   G  +Y D+A
Sbjct: 274 WPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-VDGVTVYDDFA 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI----VTD 417
           H   ++   +  +R       I+            G        +L+ AD        + 
Sbjct: 333 HHPTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAASG 392

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    D     A +      F + G  ++A+  A       D ++V   G
Sbjct: 393 RDALGWDLAGALAPLGEQARAFSDLGALVDAVTAA---ARPGDHVLVMSNG 440


>gi|168214161|ref|ZP_02639786.1| FolC bifunctional protein [Clostridium perfringens CPE str. F4969]
 gi|170714382|gb|EDT26564.1| FolC bifunctional protein [Clostridium perfringens CPE str. F4969]
          Length = 440

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 141/386 (36%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +G                   I+    +        
Sbjct: 40  KFIHIGGTNGKGSTTAMISSVLKEAGFKVGMYTSPYLEEFEERIQINGENINKDDLAILM 99

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLDG---IKLIA 206
             + KA+  +   G    +       L  +                  RLD    +    
Sbjct: 100 GDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGGRLDATNVVLPEV 159

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    T +     K  + +  +P     I Y  +  + EV+K   N  C
Sbjct: 160 VVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVP----VISYPQEEKALEVIKERCNELC 215

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L V    + I    +    + Q++ +S+E +       L G+ QV N LVA    I +
Sbjct: 216 CNLEV-VDTEDIRNIIIDKEKHVQKIEVSLEDEILKIDLGLLGDHQVKNFLVALKTLIKL 274

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                 I +  + +  +K+  + GR E +  N     + +D AH  + +  +  +I    
Sbjct: 275 RNNGVNISNEAIKQGFKKVRWI-GRMEVLNEN---PLVVIDGAHNIDGIRNLRNSIDKYF 330

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + I +   G   D+    ++ +I   +  + IV   + R+ED E +  ++   +    
Sbjct: 331 NFKNITLIL-GVLGDKQVDEMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVF 389

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  EA   A  + N+ D+L++ G
Sbjct: 390 KFKDYKEAYNKAYSLTNEDDLLLICG 415


>gi|304312310|ref|YP_003811908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [gamma proteobacterium
           HdN1]
 gi|301798043|emb|CBL46265.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [gamma proteobacterium
           HdN1]
          Length = 468

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 127/400 (31%), Gaps = 23/400 (5%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A +  + +     NT +  V            R +      ++ V GT GK++ +
Sbjct: 65  VVVGNAMARGNPAVEYMLNTGLPYVSGPEWL------RRHVLQGRWVVGVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  I + +GL    +     I     +  +   S     K      +  V       S
Sbjct: 119 SMVAWILEHAGLCPGFL-----IGGIPSNFGI---SARLGGKEGVAEPTFFVVEADEYDS 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           +    + +    +       NL  DH D      A       L    +P +   I+ A D
Sbjct: 171 AFFDKRSKFIHYQPRTAILNNLEFDHADIFDDLAAIQRQFHHLV-RTIPGQGRIILPASD 229

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGE 309
              KEV+K+       V   G  G     +            + + G+   +  + + G 
Sbjct: 230 ENLKEVLKK--GCWTPVEEFG-AGASAGWQAELLEPGGSHFAVYLSGERQGEVRWSMTGM 286

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL A       G+  +  +  L +      R E VG   +G R++ D+AH   ++
Sbjct: 287 HSVNNALAALAAARHCGVLPSDGIRALCEFEGARRRMELVG-EVQGVRVFDDFAHHPTAI 345

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L+ +R       I                   +A   A    V    P   + +   
Sbjct: 346 ATTLEGLRGNVGDARIFAVIEPRSNTMRMGVHQSLLAPSTAAADQVIWYQPPGLNWQ--L 403

Query: 430 AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             +I   P        IEA I   +      D +V+   G
Sbjct: 404 DGVIAASPVPARVEQSIEAIIADIVREARSGDQVVIMSNG 443


>gi|19745509|ref|NP_606645.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS8232]
 gi|25008810|sp|Q8P2E1|MURC_STRP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|19747627|gb|AAL97144.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes MGAS8232]
          Length = 442

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 94/301 (31%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G  GK+S    +  + +    +S+ IG  +   S      +               
Sbjct: 105 FAVAGAHGKTSTTGLLSHVLKNITDTSYLIGDGTGRGSANAQYFVFESD----------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY        NA     +++
Sbjct: 154 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQV 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D   K++      A   +   G++ G       +    N     +  +
Sbjct: 198 ---KKALFVYGEDDELKKI-----EAPAPIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQ 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  P  G+  + NA          GID ALV +HL+    V  RF     N   
Sbjct: 250 GEVIGQFHVPAYGKHNILNATAVIANLFVAGIDMALVADHLKTFSGVKRRFTEKIVND-- 307

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   +   R    S  I+ +F                 AL+ AD   
Sbjct: 308 TIIIDDFAHHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY 367

Query: 415 V 415
           +
Sbjct: 368 L 368


>gi|254468824|ref|ZP_05082230.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [beta proteobacterium KB13]
 gi|207087634|gb|EDZ64917.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [beta proteobacterium KB13]
          Length = 451

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 114/338 (33%), Gaps = 30/338 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H + ++AV+GT GK++  S +  I + + +    +    T +  +  +   + SP ++ +
Sbjct: 101 HDKWVIAVSGTHGKTTTTSMINWILRENDIDCGYLIGGITGNFSSSSSLSQSDSPFFVIE 160

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y ++                       +       N+  DH D              
Sbjct: 161 ADEYDTAFFDKRSKFIHY------------RPKTLVINNIEFDHADIFDDISHIKRHFHH 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P++   II   D  +KE +     +     +     +  H++++     K+++ 
Sbjct: 209 LI-RTVPQQGKIIINQQDKNTKETVDMGIWSEIEEFN---SSESWHIEQIN----KEKLF 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E K     + L GE    NA+ A      +G+     L+ L        R E +   
Sbjct: 261 FYKEKKIGKLNWDLIGEHNELNAMAAILAARHVGVSEENALKSLSSFKNTKRRLEVIYKK 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLA 410
           +    IY D+AH   ++  I K           +           +  +  ++   L   
Sbjct: 321 NN-LTIYDDFAHHPTAIHFIAKTFCNNFPKDKTLFVIDPRSNTMKRGDLKEELRSILRNI 379

Query: 411 DIAIVTDDNPRSEDPEKIRAE------IIHGIPGFIEK 442
              ++   +   E P K  A+      I   +  FIEK
Sbjct: 380 PAFMLFSKDLLWE-PAKYLADLDTKIFIAEDLAAFIEK 416


>gi|118590894|ref|ZP_01548294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Stappia
           aggregata IAM 12614]
 gi|118436416|gb|EAV43057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Stappia
           aggregata IAM 12614]
          Length = 466

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 111/305 (36%), Gaps = 44/305 (14%)

Query: 69  EAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            A +V +      + +  +S  +  +  + +V +   F      R        ++A+TGT
Sbjct: 66  VAALVLAPGVPLTHPVPHWSVDLARDAGVEIVGDVELFCRE---RRKQCPAAPLIAITGT 122

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +  + +  G      G   T                     L     Q   
Sbjct: 123 NGKSTTTALIAHLLKALGRDVQLGGNIGT-------------------PVLELDPPQPGR 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H  VE SS+ +D      +    G   NL  DH+D H + + Y   K RL          
Sbjct: 164 HYVVECSSYQIDLA--PTLDATVGIHMNLSPDHLDRHGSMENYAAIKERLVAG----AKV 217

Query: 244 AIIYADDAYSKEVMKR---AHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGK 298
           A++  DD  S  +  R   A    CR+        G +    ++   H+  QV +++ G 
Sbjct: 218 AVVGVDDRLSSAIADRMELARKPVCRIAGEKELTNGIYARHGRLIEAHDGSQVEVALLGG 277

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               +  L G+    NA  A     A+ I +A + E L+    +  R E V    +G  +
Sbjct: 278 ----IDSLRGDHNGQNAAAAFAALRALEIPAAQIAEALKTFPGLHHRMEVV--EKKGRIL 331

Query: 359 YVDYA 363
           Y++ +
Sbjct: 332 YINDS 336


>gi|86159812|ref|YP_466597.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776323|gb|ABC83160.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 474

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 122/376 (32%), Gaps = 37/376 (9%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           F +       G  P + + V GT GK++ ++ +  +   +G             SF    
Sbjct: 99  FPAALGELFIG--PRHGVVVVGTHGKTTTSAMMGFVLHHAGRDP----------SFLVGG 146

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                   +   +  +   +G  + +          H     +     FT+   DH D +
Sbjct: 147 VTRDFDSNFRLGSGPHFVVEGDEYDTAYFDKGPKFLHY----RPRTAIFTSCELDHADIY 202

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           + +  Y +A    F +LLP +      A     + +  RA         V   G     +
Sbjct: 203 RDEAHYESA-FERFADLLPPDGFLAACAAYESVRRISARAR-CRLETYGVDVPGADWEAR 260

Query: 281 KVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +    +  + T+  +G    +   P+ G   V NAL  A    A+G+  A +   L   
Sbjct: 261 GLSLGPDGARFTLVRKGAALAEVHLPVGGAHNVENALGVAAAATALGLSPAEIAAGLGAF 320

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQ 396
           H V  R E  GT   G  +  D+AH   ++   L  +R    G  ++          R  
Sbjct: 321 HGVRRRQEVRGTAG-GVTVIDDFAHHPRAVRKTLAAVRGSFPGARVLAAFEPRSNTSRRN 379

Query: 397 GKRPIMGKIAL-DLADIAIVTDDNPRSEDPEKIRAEI--------IHGIPG-FIEKGN-R 445
             +      A    A    V    P    PE  R ++         HG+P    +  +  
Sbjct: 380 LHQADYSDPATWSGAAEVFVLRPAPTDRVPEAERLDVDAVVRALAAHGLPARVFDAVDPM 439

Query: 446 IEAIRTAIEMLNKQDV 461
           +EA+          DV
Sbjct: 440 VEAMAAG---ARPGDV 452


>gi|322513881|ref|ZP_08066960.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
 gi|322120280|gb|EFX92227.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
          Length = 436

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 136/395 (34%), Gaps = 58/395 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV S   +L         N  + VV +   F+              I+A+TG +GKS+V 
Sbjct: 70  IVSSPGLALATPEIQQAINAGVEVVGDIELFVREA--------KAPIIAITGANGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +++G+     G                         LS L+ +      +E S
Sbjct: 122 TLVTEMAKQAGIKVGMGGNIGV-------------------PVLSLLNEE-YELFVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  L+      +K +  +  N+  DH+D Y+ + + Y  AK+R+++         I+  +
Sbjct: 162 SFQLE--TTSSLKAVVATILNISEDHMDRYNNSVEEYRLAKLRIYDNAEN----VIVNGE 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +  +  +A     R      +    +  +   +++     I  +         + G 
Sbjct: 216 DRLTYPLETQAVKKLIRF----AEHNAEYTMRNGILYSGDDAIIPTK------EMLISGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NALVA  L    GI    +++ L+    +  RF+ V TN     +    A    S 
Sbjct: 266 HNEMNALVAMALAETAGIPREGIVKALQVYGGLEHRFQAVKTNDGVRWVNDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++ +  G + ++   G  +      +   I            D           
Sbjct: 326 VAALNGLQVV--GTLYLLL-GGDGKAADFSELKPLINKPNIVCYCFGQDG---------- 372

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A++       +      +AI      L K D++++
Sbjct: 373 AQLAALSNQSVLVETMQQAIEQIRPQLKKGDMVLL 407


>gi|258546150|ref|ZP_05706384.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
           hominis ATCC 15826]
 gi|258518575|gb|EEV87434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
           hominis ATCC 15826]
          Length = 436

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 134/405 (33%), Gaps = 56/405 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA A GA  +VVS     +  +A   S    +  ++   F  L        + + +LAV
Sbjct: 60  PQAFA-GAGTLVVSPGVDRR-RAAFTHSYAQQI--NDIELFARL--------NDKPVLAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+V + + Q    +G  +   G                          +    +
Sbjct: 108 TGSNGKSTVVTLLAQALNHAGHKAKLCGNIG------------------RPVLDALFDGE 149

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +E SS+ L+      +     +  N+  DH+D +    AY  AK  L  +    
Sbjct: 150 AADCYVIELSSYQLEL--CPSLYPRVAAVLNVTPDHLDRYDDFAAYAAAKANLVRQ---- 203

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S  I+  DD     + +   N    ++  G      +  +   I       +       
Sbjct: 204 SSICILNGDDEACVAMAEDGQN----IIYYGTSATLPNRVEGGKIWLHGHALLET----- 254

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G     N L    +  A G+    VL  LE    +P R + V +   G R Y 
Sbjct: 255 -ARLRLGGAHNHANILCTLLMLEAYGVAPQQVLSALETFAGLPHRMQLV-SEENGVRWYD 312

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D   T+    +             +V+   G  ++Q    +  ++        ++   + 
Sbjct: 313 DSKATN----IGAAAAALAGIDGAVVLIAGGVGKNQDFSLLARELQQANLRGVLLIGVDN 368

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           R      + A        F + G   +A+  A  +    D +++A
Sbjct: 369 R-----DMAAAFTAAGIAFEDCGTMDKAVARARALAQAGDSVLLA 408


>gi|51473598|ref|YP_067355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           typhi str. Wilmington]
 gi|60390366|sp|Q68WW9|MURD_RICTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51459910|gb|AAU03873.1| D-glutamate ligase [Rickettsia typhi str. Wilmington]
          Length = 457

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 113/319 (35%), Gaps = 45/319 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I ++ +                    +A+TGT+GKS+ A
Sbjct: 67  IVLSPGVPLTHEVVRIAHHFNIPIISDIDLL-------FEKSKNLKFIAITGTNGKSTTA 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                     +    +  S  G     +E S
Sbjct: 120 ALISHILNSNGLDYTVAGNIG------------------VPALQAKASKDG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +    +      N+  DH+D +Q    Y  AK ++F+  + K+S A+I  D+
Sbjct: 159 SFQLDL--VKIFTVKVAVLLNITPDHLDRYQDMNGYIAAKAKIFDR-MDKDSYAVINIDN 215

Query: 251 AYSKEVMKRAHNAG-CRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            Y +++          +++           +  V    +   +T  +          L G
Sbjct: 216 DYCRKIFLLLQREQLIKLIPFSVTKILNNGISIVDDKIHDNNLTYKLP-----LNKNLQG 270

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N   +  +   IG++S  +LE +     +  R +++G+ +     + + +  +N+
Sbjct: 271 LHNCENIAASYAVSKIIGVESKKILESISSFQSLHHRMQYIGSINNIS--FYNDSKATNA 328

Query: 369 LEM-----ILKNIRTITSG 382
           +        L NI  +  G
Sbjct: 329 ISALQSIKALDNIYWLAGG 347


>gi|315653712|ref|ZP_07906632.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
 gi|315489074|gb|EFU78716.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
          Length = 460

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 121/389 (31%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I +               I     +  L   +   L   +S     GV  +         
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK-------- 185

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +  I   + N+   HIDYH+T + Y  AK+R+  +   K    I   D     
Sbjct: 186 -----PKVAAIVDIYNNV---HIDYHKTFENYVAAKLRI-TQNQDKSDYFIANFDQKNIL 236

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E       A     S        ++ +           + +          +PG     N
Sbjct: 237 EQELSLTKAHVVTFSEESTQADYYIGEQYLESQADHEIMKISD------IKIPGRHNQQN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +LVA  +   +G     +   L        R ++V T +   RIY D   T+  +E    
Sbjct: 291 SLVAIAISKLMGASDEDIRSVLSTFTGAKHRLQYVMTYNN-RRIYNDSKSTN--IEAASV 347

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I + +     V+   G DR      ++  +   +  I +  +      D  +       
Sbjct: 348 AIPSFSQPE--VLIAGGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAAR-----KA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A ++ N  DVL+
Sbjct: 401 GIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|39936594|ref|NP_948870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris CGA009]
 gi|62900683|sp|Q6N409|MURD_RHOPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39650450|emb|CAE28973.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rhodopseudomonas
           palustris CGA009]
          Length = 469

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 108/306 (35%), Gaps = 40/306 (13%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V++    L      ++        + V+ +   F      R         +A+TGT+
Sbjct: 67  AALVLTPGVPLTHPAPHWTVLKAQEAGVEVIGDVELFCRE---RKAHAPRAPFVAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  + + +G  +   G   T                     LS    +    
Sbjct: 124 GKSTTTALIAHLLREAGWDTQLGGNIGT-------------------AILSLEPPKDGRV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ +D      +    G   N+  DHID H T + Y   K RL    +     +
Sbjct: 165 HVIEMSSYQIDL--TPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAG-VQDGGTS 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGKD 299
           II  DD + +    R   AG RV+ +  QG         L  +  +       ++  G  
Sbjct: 222 IIGVDDEFGRAAADRIERAGKRVVRMSVQGPVTFGITADLDSIRRVDGGTSTEVAKLGGI 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGR 357
                   G     NA  AA   +A+G+   ++ + L     +  R E VG     +G  
Sbjct: 282 GSLR----GLHNAQNAAAAAAAVLALGVSPEVLQQGLRSFPGLAHRMEQVGRQVGEQGTT 337

Query: 358 IYVDYA 363
           ++V+ +
Sbjct: 338 LFVNDS 343


>gi|325922162|ref|ZP_08183951.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
 gi|325547364|gb|EGD18429.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
          Length = 452

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 143/412 (34%), Gaps = 28/412 (6%)

Query: 63  AIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           A+AQG A + + +    +   +A  R N  +  V +  +  +  A  L  +     + LA
Sbjct: 49  ALAQGYAPSNISADTTDVVIGNALSRGNPAVEAVLDAGRRYTSGAQWLAEQVLPGRDTLA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++  + +  + + +G +   +     I   A+D          L +   ++  
Sbjct: 109 VAGTHGKTTTTTILSCLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGREFVVE 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                 +          +R      +     NL  DH D      A       L    +P
Sbjct: 160 ADEYDTAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVP 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  +DA   EV+  A      V   G+        ++ A        +    + 
Sbjct: 214 ARGRLIVNGEDARLAEVL--AMGCWTPVERFGFDAALEWSARLIAADGSVFAVLHRGVEI 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               +PL G   V N L A     A+G+D A V+  L +   V  R E +G  +R   +Y
Sbjct: 272 GQVHWPLVGRHNVLNGLAALAAVHAVGVDPASVMPALARFQSVKRRLEVLG-QARDITVY 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417
            D+AH   ++   L+ +R       ++V                 +A  L  AD  +   
Sbjct: 331 DDFAHHPTAIATTLQGLRAKVGAARVLVAMEPRSNSMRLGAHAQALAPSLQDADAVVFL- 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              R E      A I+  + G     + ++A+   + E+    D +V    G
Sbjct: 390 --HRPELAWD-AAPIVAQVRGDAHVAHDVDALLHTLGEIAQPGDHVVFMSNG 438


>gi|325911662|ref|ZP_08174069.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|329921080|ref|ZP_08277603.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
 gi|325476428|gb|EGC79587.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|328934987|gb|EGG31476.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
          Length = 460

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 121/389 (31%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I +               I     +  L   +   L   +S     GV  +         
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK-------- 185

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +  I   + N+   HIDYH+T + Y  AK+R+  +   K    I   D     
Sbjct: 186 -----PKVAAIVDIYNNV---HIDYHKTFENYVAAKLRI-TQNQDKSDYFIANFDQKNIL 236

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E       A     S        ++ +           + +          +PG     N
Sbjct: 237 EQELSLTKAHVVTFSEESNQADYYIGEQYLESQADHEIMKISD------IKIPGRHNQQN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +LVA  +   +G     +   L        R ++V T +   RIY D   T+  +E    
Sbjct: 291 SLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNN-RRIYNDSKSTN--IEAASV 347

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I + +     V+   G DR      ++  +   +  I +  +      D  +       
Sbjct: 348 AIPSFSQPE--VLIAGGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAAR-----KA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A ++ N  DVL+
Sbjct: 401 GIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|218561393|ref|YP_002394306.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli S88]
 gi|218368162|emb|CAR05971.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli S88]
          Length = 457

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 30/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I ++ G     +     I     +  ++           
Sbjct: 103 RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-----IGGVPGNFEVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D     +A       
Sbjct: 147 ARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V 
Sbjct: 207 LV-RIVPGQGRIIWPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLTTDASEWEVL 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 263 LDGE-KVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDL 409
           + G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           AD   +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 381 ADEVFLLQ--PAH-IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPSDHILVMSNG 436


>gi|195978758|ref|YP_002124002.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|229620432|sp|B4U4S2|MURC_STREM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|195975463|gb|ACG62989.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 443

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 104/348 (29%), Gaps = 46/348 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++  +A+   + S    +    L      +FL  F  +         L V G  GK+S  
Sbjct: 65  LIAGNAFREDNNSEVAYAMRHQLPFKRYHEFLGEFMKQF------TSLGVAGAHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +S+ IG  +     A D R          +                  
Sbjct: 119 GLLSHVLKHMTATSYLIGDGT--GHGAADARYFVFESDEYERHF--------------MP 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H                 TN+  DH DY       FNA     +++   +    +Y +D
Sbjct: 163 YH-----------PEYSIITNIDFDHPDYFTGLDDVFNAFNDYAKQV---KKALFVYGED 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
              +++     ++   +   G++         +    N     +  +G     F  P  G
Sbjct: 209 EELRKI-----SSPAPIYYYGFEDTNDFVAFDITRTTNGSDFKVKHKGHAIGQFHVPAYG 263

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA          G D  LV EHL+    V  RF     N     I  D+AH    
Sbjct: 264 RHNILNATAVIANLFIAGFDMKLVAEHLKSFSGVKRRFTEKVIND--TIIIDDFAHHPTE 321

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   L   R    +  II +F                 AL+ AD   +
Sbjct: 322 IIATLDAARQKYPNKEIIAIFQPHTFTRTIALLDDFAHALNEADSVYL 369


>gi|164688450|ref|ZP_02212478.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
 gi|164602863|gb|EDQ96328.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
          Length = 175

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 13/166 (7%)

Query: 11  FPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             EL+N  S       E    INE+  DSR      +F AI+G   DGH FI  AI  G 
Sbjct: 6   IEELVNATSGDLTSKSEEVTSINELVIDSRIANKNSVFFAIIGESLDGHKFINSAIENGC 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           + I+ + + + +     I  +  I+ V+NT   L   A     K     + +TG+ GK+S
Sbjct: 66  KTIIKNKSNNFE----IIGEDLNIIEVENTEFALGDIARYYKSKFDIPYIGITGSVGKTS 121

Query: 129 VASFVQQI-------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
               V           + +G  + Q G   T+++  +         
Sbjct: 122 TRDMVFSAVSSKFKTLKNTGNLNNQFGVPLTLANLDKSYECAVIEM 167


>gi|333027605|ref|ZP_08455669.1| hypothetical protein STTU_5109 [Streptomyces sp. Tu6071]
 gi|332747457|gb|EGJ77898.1| hypothetical protein STTU_5109 [Streptomyces sp. Tu6071]
          Length = 514

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 122/426 (28%), Gaps = 46/426 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      + Q A+ +VV+SA          R+    + V +    L + +     +   
Sbjct: 93  GHR--ADNVPQDAQLVVVTSAAVDPGNPELARARETDVSVVDRAALLGMMSEAAEQRIAI 150

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
              +   T+        +      +     + G  +   +F               +A  
Sbjct: 151 AGTSGKTTTTSLVGRMILACELDPTIAVGTRAGDFTDGGNFRLGEGPFVTEACEYHEAFR 210

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +L                         +  A    N+  DH D+              F 
Sbjct: 211 FL-------------------------EPDAAVVLNVYHDHGDFFTEGIRTIEEAFARFV 245

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTIS 294
                    ++ AD   ++ +      A  R +SVG+       +  V     +   +I 
Sbjct: 246 ARTRPGGLVVVGADCPRARLL---EVPAAVRRVSVGFAADADYRIGDVVWKAGRASFSIG 302

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+        LPG   + N   A  L   + +     +  L      P R E+ G N+
Sbjct: 303 GPGRRRVRLDPALPGRHNILNVAAAFALASELDLPLEKAVPALNGFTGAPRRLEYQG-NA 361

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  ++ D A ++      ++ +R +  G  I VV                       + 
Sbjct: 362 DGIAVWDDLACSTGEATATMEAVRGLAQGGRITVVLRPNSFSRVRDNFAEYAGVFTTTEH 421

Query: 413 AIVTDDNP--RSEDPEKIRAEIIH----------GIPGFIEKGNRIEAIRTAIEMLNKQD 460
            IVTD  P   +E   +   +++            +P    + +R          L   D
Sbjct: 422 VIVTDIFPGRDTETFGQHARDLVANMAAKGRDVVYVPDLNGRPDRERIFDLLNARLESGD 481

Query: 461 VLVVAG 466
           +LV  G
Sbjct: 482 ILVTLG 487


>gi|308048304|ref|YP_003911870.1| UDP-N-acetylmuramate [Ferrimonas balearica DSM 9799]
 gi|307630494|gb|ADN74796.1| UDP-N-acetylmuramate [Ferrimonas balearica DSM 9799]
          Length = 455

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 116/366 (31%), Gaps = 41/366 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQ----RSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +LAV+GT GK++ AS +  + +      G     +     +S+   D         
Sbjct: 101 PGRWVLAVSGTHGKTTTASMLAWLLEDNQLAPGFLIGGVPQEFGVSARLGDTPFFVVEAD 160

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               A     S+ V +                  +       NL  DH D   +      
Sbjct: 161 EYDSAFFDKRSKFVHY------------------RPRTLLINNLEFDHADIFDSLADIQR 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               L    +P     I  A D    EV+ +   +   +L  G        +      + 
Sbjct: 203 QFHHLV-RTVPGSGQIIWPAADTAVAEVLAKGCWSEQALLGPG------GWEARKLAQDG 255

Query: 289 QQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  + + G+   +  + L G+  + NAL A      +G+  A  +  L +      R E
Sbjct: 256 SRFEVLLGGEVLGEVQWNLMGDHNIQNALGALAAARHVGVRPADGIASLARFAGPKRRME 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
             G  + G  +Y D+AH   ++      L+      S  + V+        QG       
Sbjct: 316 RRGEAA-GVTLYDDFAHHPTAITTTLAGLRARLGSESRILAVLEPRSNTMKQGVHQATLA 374

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVL 462
            +L  +D A V    P     +   A     +P  +     + I+AI   +      D +
Sbjct: 375 ASLGQSDQAFVFA--PPGLGWDLTAAMAAAPVPVTVRDSVQDLIDAI---VAEAQTGDTV 429

Query: 463 VVAGKG 468
           +V   G
Sbjct: 430 LVMSNG 435


>gi|220910205|ref|YP_002485516.1| cyanophycin synthetase [Cyanothece sp. PCC 7425]
 gi|219866816|gb|ACL47155.1| cyanophycin synthetase [Cyanothece sp. PCC 7425]
          Length = 918

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 117/356 (32%), Gaps = 29/356 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  IC+++G +   +G T+T   +  D  +          A   L    V    +E + 
Sbjct: 503 LLAHICKQTGRT---VGYTTTDGIYIGDYMVEKGDTTGPQSAQVILKDPTVEIAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L   +   G   N+  DH+           A ++ +  E    +  A++ ADD
Sbjct: 560 GGILRSGLGFDQCDVGVVLNVQADHLGLGDIDTIDQLADLKAVVVETARTDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTISVEG-KD 299
                + +                     +   G     +       K   T+ +E   +
Sbjct: 620 PMVAPMAQHVQAQVAYFSLNPDNPLIRQHIDRGGLAAVYENGYLSILKGDWTLRIEQAVN 679

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRG 355
                     F + NAL A+    A GI    +   L          PGR          
Sbjct: 680 VPITMAGRASFMIANALAASLAAFAQGIAIEHIRAALTSFRTSASQTPGRMNLFDLGR-- 737

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               VDYAH     + +   +     G  I V G  GDR       +G ++  + D  IV
Sbjct: 738 FSALVDYAHNPAGYQAVGDFVLKW-PGERIGVVGGPGDRRDEDLETLGSLSAQIFDRVIV 796

Query: 416 TDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +D+      R    E I+A ++   P   + E  +   AI  A+E      ++V+
Sbjct: 797 KEDDDTRGRARGNAAEWIKAGLLQVKPDYSYEEILDETTAISKALETAPDGSLVVI 852


>gi|94991839|ref|YP_599938.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94545347|gb|ABF35394.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 121

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIH 434
           +    +G+++++ G  G++ + +R   G++     ++  I+T D+P  EDPE I  EI  
Sbjct: 1   MEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVILTADDPNFEDPEDISKEIAS 60

Query: 435 GIPGFIEK-GNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            I   +E   +R +AI+ A+ +    +D +++AGKG +   IV   +   + D  I +  
Sbjct: 61  HIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQIVKGQQVAYAGDLAIAKHY 120

Query: 493 L 493
           L
Sbjct: 121 L 121


>gi|88705706|ref|ZP_01103416.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Congregibacter litoralis KT71]
 gi|88700219|gb|EAQ97328.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Congregibacter litoralis KT71]
          Length = 460

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 130/422 (30%), Gaps = 59/422 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKS 127
             IVV +A S  + +     +  +  +   +    ++ A R        +LAV+GT GK+
Sbjct: 64  ALIVVGNALSRGNPAVEAVLDRGLPYLSGPQWLAEAVLADRW-------VLAVSGTHGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +S +  I + +GL+   +     I     +  ++           + L       +  
Sbjct: 117 TASSMLAWILEDAGLAPGFL-----IGGVPLNFGVS-----------ARLGDGNFFVIEA 160

Query: 188 EASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +         R   +  +       NL  DH D +    A       L    +P      
Sbjct: 161 DEYDTAFFDKRAKFVHYRPRTLVVNNLEFDHADIYPDLAAIQRQFHHLI-RCIPGTGRVF 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A     +E+++         LSV           +           +  G+     + 
Sbjct: 220 TPAGIPAVEEMLELGCWTPRETLSVSGGNADWEAS-LDDPGASHWALAAPGGERLSVSWG 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G   V NAL A      +G+  A  +E LE+   V  R E  G    G R+Y D+AH 
Sbjct: 279 QRGAHNVANALGACAAARHVGVTPAHAVEALERFAGVRRRLELRGEVG-GVRVYDDFAHH 337

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR---- 421
             ++   L+ ++     + ++                  +A    D   V    PR    
Sbjct: 338 PTAIASTLRAMKGAAGRQRVLAVIEPRSNTMRMGDHRAALAPSTVDADAVFWYQPRALGW 397

Query: 422 --------SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG----- 468
                   SE P  I  +I              E I   +      D ++V   G     
Sbjct: 398 SLDDVLAKSEVPATISEDID-------------ELIARVVSESLPGDDVLVMSNGAFGGI 444

Query: 469 HE 470
           HE
Sbjct: 445 HE 446


>gi|325929133|ref|ZP_08190278.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
 gi|325540485|gb|EGD12082.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
          Length = 339

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 119/350 (34%), Gaps = 31/350 (8%)

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + +  + + +G +   +     I   A+D          L +   ++       
Sbjct: 1   GKTTTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGREFVVEADEYD 51

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +          +R      +     NL  DH D      A       L    +P     
Sbjct: 52  TAFFDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVPARGRL 105

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  +DA+  EV+  A      V   G+        ++ A        +    +     +
Sbjct: 106 IVNGEDAHLAEVL--AMGCWTPVERFGFDASLDWSARLIAADGSAFAVLHRGVEIGQVQW 163

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G   V N L A     A+G+D A V+  L +   V  R E +G ++R   +Y D+AH
Sbjct: 164 PLVGRHNVLNGLAALAAVQAVGVDPATVMPALAQFQSVKRRLEVIG-SARAITVYDDFAH 222

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRS 422
              ++   L+ +R       +VV                 +A  L  AD  +      R 
Sbjct: 223 HPTAIATTLQGLRAKVGAARVVVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL---HRP 279

Query: 423 E---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           E   D   I A++  G    ++  +   A+  A+ ++    D +V    G
Sbjct: 280 ELAWDAAPIIAQV-RGEARVVQDVD---ALLRALGDIARPGDHVVFMSNG 325


>gi|217076877|ref|YP_002334593.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
 gi|217036730|gb|ACJ75252.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
          Length = 514

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 119/366 (32%), Gaps = 27/366 (7%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQ-ICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           A R   +     +AVTG+ GK+S   ++   + +            +T+           
Sbjct: 158 AKRKISRLNPLTVAVTGSYGKTSTKYYLHHLVAEHYKSLMTPESYNTTMGITKTIREKLD 217

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            S       L+   + G +               L+ IK      T++G  H +  ++  
Sbjct: 218 KSHEVFIVELAENDNYGYS-------------KLLELIKPQISILTSIGIQHFEEFESLD 264

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVC 283
                  + F          I   DD   K V++           ++  +     ++++ 
Sbjct: 265 NIIQN-FKNFILDERSGKKIIANIDDENIKNVLENIDTKKEIITCAINEKNAQYKVEELK 323

Query: 284 AIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              +      I+   + F F   + G   + N L+A      + +    V+E  + +   
Sbjct: 324 ISKDGANFAIITPNNQKFYFETNVYGYENIRNLLLAIVASFELKVPVEEVIERAKNIVKP 383

Query: 343 PGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGK 398
             R E V   +    +  D +       +M L+ +    + R I+V   F   G+++  +
Sbjct: 384 KHRLEIV--RNDTITVIDDTFNSNPKGFKMALEYLALFENKRKILVTPGFVELGEKEDEE 441

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN 457
              +GK      D+  +  +  R+E   K    I     G I    +  E I      L 
Sbjct: 442 HYKIGKEIAKYVDVVFLIGEK-RTEKIYK--GLIDSNFEGKIFIVEDLNEVIEKFKTFLQ 498

Query: 458 KQDVLV 463
             DV++
Sbjct: 499 PGDVVL 504


>gi|284047777|ref|YP_003398116.1| FolC bifunctional protein [Acidaminococcus fermentans DSM 20731]
 gi|283951998|gb|ADB46801.1| FolC bifunctional protein [Acidaminococcus fermentans DSM 20731]
          Length = 426

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 144/407 (35%), Gaps = 57/407 (14%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SS 155
            +   L A   + +     + VTGT+GK SV +F+  + Q++G           +     
Sbjct: 23  ERIQGLTALLDHPERKIRTIHVTGTNGKGSVTTFLANMLQQAGKKVGSYTSPHFVRYNER 82

Query: 156 FAQDNRLTTPSPI---------YLAKALS------------------YLSSQGVTHVSVE 188
              +    +              L + L+                  Y + + V +  +E
Sbjct: 83  ICLNGEEISNEDFAAVTERTKAALDRFLAEGGEQPTQFEFITAMAFLYFAEKQVDYAVIE 142

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIY 247
               GL     + I       TN+  +H D    T +A    K  + +  +P     +  
Sbjct: 143 VGMGGLWDS-TNIITPEVSVITNVTLEHTDRLGKTIEAIAAQKAGIIKPGVP----VVTE 197

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A+    + +   A  +   +   G        +++ +  + Q     +  K+ +    LP
Sbjct: 198 AEGKALEVIRGTAEASHAPLYVYG---DDFSTEELTSSMDAQTFLYRMGEKEMEVTIHLP 254

Query: 308 GEFQVYNALVAAGLCIAI-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           GE Q+ N   A      +      ID A +L  ++      GR E +    R   I +D 
Sbjct: 255 GEHQILNGAAALAAAEILREKDGSIDEAAMLRGMDAARWP-GRLERIH---RNPDIILDG 310

Query: 363 AHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
           AH  + + ++ K +     G R I VFG   D+D  +   + +I     D    ++  + 
Sbjct: 311 AHNPSGVTVLRKALDEYYPGARRIYVFGMMADKDVSQ---VSEILFRPEDTIYTVLAHEG 367

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            RSE PEK+   +        E      A R A++    +DV++V G
Sbjct: 368 DRSEKPEKLARRLHKNAVPMDEL---AAAYRRAVQEAGPEDVVIVCG 411


>gi|331006871|ref|ZP_08330124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium IMCC1989]
 gi|330419322|gb|EGG93735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium IMCC1989]
          Length = 454

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 149/401 (37%), Gaps = 49/401 (12%)

Query: 68  AEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  IV+S   SL+  +  A I     I  V +      LFA  +     + ++A+TG++ 
Sbjct: 70  ASEIVISPGVSLKTPELQAAIAEGVSI--VGDIE----LFARAVT----KPVIAITGSNA 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + V ++    GL     G                         L  L++      
Sbjct: 120 KSTVTTLVGEMAAACGLLPAVGGNLGV-------------------PVLELLNNTLADVF 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +K +A +  N+  DH+D + +   Y   K R++          I
Sbjct: 161 VLELSSFQLE--TTYSLKPVAATVLNVSHDHMDRYASLAEYHQVKQRIYRH----AESII 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-- 303
           I   D  ++  + +   A      V   G    ++    +    ++ +S +         
Sbjct: 215 INRQDVLTQPPLSK--EANVISFGVDSAGNSPDMRSFGLLAQGDKLFLSHKFAPLLSTED 272

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G     NAL A  L  A G     +L+ L+    +  R E++ T +    I     
Sbjct: 273 IQIKGRHNYANALAALALGSAAGFGMEGMLDALKTFKGLQHRCEYIATVNDVTYINDSKG 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +    ++   ++ + + IV+   G  +     P++  +   +  + ++        
Sbjct: 333 TNVGATLAAIE-GFSVKNEKNIVLIAGGDGKGADFSPLVDAVNRSVKTLILI------GH 385

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D EK+   ++H +   ++  + I+A++ A     K DV+++
Sbjct: 386 DAEKLYN-MLHQVVSCVKAESLIDAVKQASINAGKGDVVLL 425


>gi|300703024|ref|YP_003744626.1| UDP-N-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Ralstonia solanacearum
           CFBP2957]
 gi|299070687|emb|CBJ41982.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           CFBP2957]
          Length = 471

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 133/411 (32%), Gaps = 40/411 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+  V+ +  S  +       +  +  V             +  +  + +LAV GT GK
Sbjct: 71  GADLYVIGNVISRGNPLMEAILDRNLPYVSGP----QWLGDNVLRQ--KWVLAVAGTHGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I Q +G     +     +    ++  L+           + L++     + 
Sbjct: 125 TTTTSMLAWILQDAGYEPGFL-----VGGVPRNFGLS-----------ARLTASDFFVIE 168

Query: 187 VEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +         R   +  +       NL  DH D      A    +       +P +   
Sbjct: 169 ADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHLVRTVPGQGRV 227

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++   +   K V+  A      V   G   +      +  + +     + ++G+      
Sbjct: 228 LVNGREESLKRVL--ARGCWSEVELFG--AEDGTGWAIANLGDDDSFDVVLDGQVQGRVR 283

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +PL G+    NAL A      +G+  A  +E L +   V  R E  GT   G  +Y D+A
Sbjct: 284 WPLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGT-VDGVTVYDDFA 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI----VTD 417
           H   ++   +  +R       I+            G        +L+ AD        + 
Sbjct: 343 HHPTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAASG 402

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    D     A +      F + G  ++A+  A       D ++V   G
Sbjct: 403 RDALGWDLAGALAPLGEQARAFSDLGALVDAVTAA---ARPGDHVLVMSNG 450


>gi|330964055|gb|EGH64315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 448

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 119/350 (34%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G                        AL
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLG-------------------PPAL 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             LS   V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 150 DLLSDD-VELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKFLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G     NAL A  L  A+G+    +L  L +   +  R +++   + 
Sbjct: 259 FDNLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLRERNG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    +    ++ + +   G+++++   G  +      +   +A       +
Sbjct: 319 VDYYNDSKATNVGAALAAIEGLGSDIDGKLVLI-AGGDGKGADFSGLRAPVAQYCRAAVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        D E I   +   +P  I       A   + E+    D +++
Sbjct: 378 L------GRDAELIAQALGDAVP-LIRVDTLQAAAERSAELAQHGDAVLL 420


>gi|194466657|ref|ZP_03072644.1| UDP-N-acetylmuramate/alanine ligase [Lactobacillus reuteri 100-23]
 gi|194453693|gb|EDX42590.1| UDP-N-acetylmuramate/alanine ligase [Lactobacillus reuteri 100-23]
          Length = 434

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 86/302 (28%), Gaps = 40/302 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G  GK+S  + +  +      +S+ IG    +     D R                
Sbjct: 106 IGIAGAHGKTSTTALLSHVLAAVEPTSYLIGD--GVGKGNADARFFVFEAD--------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY        ++     +++
Sbjct: 155 ----------EYRDHFLAYH------PDYAIMTNVDFDHPDYFNDLADVRDSFETYGKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +     + DD   +++     N    V   G         + +              
Sbjct: 199 ---QRAIFAWGDDPSLRDL-----NVDVPVYYYGTNPDDDFRAENIQRTPEGSTYDAYFR 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   L GE  V N+L    +     ++   + + L     V  RF    T+   
Sbjct: 251 DQKLGTFTIHLYGEHSVLNSLAVLAVAYMEHMNMDEIQQELANFSGVKRRFS--ETDIAD 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  + ++  +   R       +I VF                 +L  AD   
Sbjct: 309 TTIIDDYAHHPSEIKATIDAARQKYPDREVIAVFQPHTYSRLAAYIDDFAESLSRADKTF 368

Query: 415 VT 416
           VT
Sbjct: 369 VT 370


>gi|325684350|gb|EGD26519.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 460

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 123/353 (34%), Gaps = 40/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQI----CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     +QI     Q+ G  ++ +G        ++           L
Sbjct: 113 SPYVCVTGSNGKTTTVMLTKQIMDHYLQKQGHHAYAVGNIG--WPISEVVLNQAGPDDLL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S     GVT +                +  I   + N+   H+DYH+T   Y +AK
Sbjct: 171 VVEMSSFQLMGVTDIE-------------PKVAAIVDIYNNV---HLDYHKTFDNYVDAK 214

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +             +   D        ++A  A     S        ++ +   +H +++
Sbjct: 215 LN-VGRFQKASDYFLANFDQKDILTREEKATKAKILTFSENDPAADFYIGQDYLMHGEEK 273

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +    +         LPG   + N+LVA G+   +G     +   L        R ++V 
Sbjct: 274 MMKIAD-------IKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQYVT 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++Y D   T+  +E     I++       V+   G DR      ++        
Sbjct: 327 T-LDGVKVYNDSKSTN--IEAATVAIQSFKQPE--VLLAGGLDRGFVFDSLVD--LFKKH 379

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             AIVT    R    +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 380 VKAIVTYGETRYLLADAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|220912337|ref|YP_002487646.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859215|gb|ACL39557.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 525

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 142/418 (33%), Gaps = 48/418 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV S  +          +   I V  +    L+    R  G+   + LA+TGT+GK++  
Sbjct: 97  IVTSPGWRPDQALLAAAARAHIPVWGDVE--LAWRVRRREGRKTADWLAITGTNGKTTTV 154

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              + + + +GL +  +G                       K +     + V +      
Sbjct: 155 GLTESMLRAAGLKAIAVGNVG--------------------KPILDAIREPVEYDVFAVE 194

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H  + +  +A    N+  DH+D+H +  +Y   K +++E     +   +  A+ 
Sbjct: 195 LSSFQLHWAESLSPLASVCLNVAEDHVDWHGSYDSYLADKAKVYER---TQKACLYNAEQ 251

Query: 251 AYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS------VEGKDFDFL 303
             ++ +++ A     CR +        I +  V       +  I        E      L
Sbjct: 252 FETERMVENADVVEGCRAIGFTTVTPAISMLGVVEGLLVDRAFIEERRDSAAELAAMADL 311

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+     V NAL AAGL  A G+D+A V + +        R + V  +     +    A
Sbjct: 312 GPIAPRHMVANALAAAGLVRAYGVDAAAVRQGIRDYVPGDHRIQPVARHEGVLWVNDSKA 371

Query: 364 HTS---NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR------------PIMGKIALD 408
                  +      N+  I  G    V      R+Q  R             + G +   
Sbjct: 372 TNPHAAAASLAAFTNVVWIAGGLSKGVTYDDLVREQAHRLKAVVLIGTDSTELAGALQRH 431

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVA 465
             D+ ++      +E+ +   AE   G    +       +A+ TA ++    D +++A
Sbjct: 432 APDVPVIAAAPGETEEVQTAAAEGATGTRFPLSGEQVMSQAVATAAQLAGSGDTVLMA 489


>gi|149919590|ref|ZP_01908069.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Plesiocystis pacifica SIR-1]
 gi|149819533|gb|EDM78961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Plesiocystis pacifica SIR-1]
          Length = 631

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 126/388 (32%), Gaps = 41/388 (10%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           F S+ A+ L  +       V GT GK++ +S +  + + +G       P+  I    Q+ 
Sbjct: 91  FPSMLAASLLSE--RRSFVVAGTHGKTTTSSLLTWLLRVAGAD-----PSYLIGGVPQNL 143

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
              +         L                 H          + +    T++  DH D  
Sbjct: 144 GRGSHLGRGDVIVLEGDEYDTAFFDKKSKFLH---------YRPVKAILTSVEFDHADIF 194

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH--NAGCRVLSVGYQ----- 273
            + +   +A +  F EL+P +   +I A +  + EV  +A       RVL+ G       
Sbjct: 195 DSYEQIRDAFVE-FVELIPADGLLVIDAANEGAVEVAAKAQCEVQSYRVLNRGEAPSEDL 253

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +           +    +   G     F   L G + + N   A  +  + G     +
Sbjct: 254 ATWCVRVTSRPGARRTAFELYERGSLVGSFSTLLTGAYNLANITAAFAVARSEGYSVEAL 313

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCG 391
            E +     V  R E +G   +G R+  D+AH   ++++ ++   R    G + V F   
Sbjct: 314 GEAIRLFRGVKRRQELLGV-VQGVRLMQDFAHHPTAVDLTIRALRRRYPEGALHVCFEPR 372

Query: 392 GDRDQGKRPIMGK-IALDLADIAIVTDDN-----PRSE--DPEKIRAEII---HGIPGFI 440
               +      G   A D A    V         P  +  D   + + +         + 
Sbjct: 373 SSSSRRDVFFDGYTAAFDAASRVYVAPVYAPERVPDGQVLDTTALASALRSRGATASNYG 432

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +A+   IE     D +V+   G
Sbjct: 433 SIAELGDAV---IEHAAPGDTVVLLSSG 457


>gi|282896417|ref|ZP_06304438.1| Cyanophycin synthetase [Raphidiopsis brookii D9]
 gi|281198705|gb|EFA73585.1| Cyanophycin synthetase [Raphidiopsis brookii D9]
          Length = 860

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 127/358 (35%), Gaps = 30/358 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  +          A   L    V    +E++ 
Sbjct: 479 LLAHIYKQTGQ---IVGYTTTDGTYIGDFLVEAGDNTGPQSAHLILQDPTVEVAVLESAR 535

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+      T +   N K  + E + P +  A++ AD
Sbjct: 536 GGILRSGLGFEFANVGVVLNVAADHLGIGDIDTIEQLANLKSVVAEAVFP-DGYAVLNAD 594

Query: 250 DAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----------EGK 298
           D     + ++   N     +S   +    H++K       +   +S+          + +
Sbjct: 595 DYRVAAMAEKTKANIAYFTMSPDSELVQRHIQKGGVAAVYENGYLSIVKGDWTHRIEKAE 654

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
                      F + NAL A+       +    +   L          PGR         
Sbjct: 655 SIPLTMSGKAPFMIANALAASLAAFVQNVTIEQIRAGLRSFRASVSQTPGRMNLFNLGKY 714

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH   S + +   +R  TSG+ I V G  GDR       +GK+A ++ D  I
Sbjct: 715 HALV--DYAHNPASYQALGSFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYII 772

Query: 415 V-TDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           V  DD+ R          II GI        +    +  +AI   ++M     ++V+ 
Sbjct: 773 VKEDDDTRGRPRGSGSDLIIQGITQTKANCRYESILDETQAINKGLDMAPDGSLVVIL 830


>gi|184153839|ref|YP_001842180.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri JCM
           1112]
 gi|183225183|dbj|BAG25700.1| ligase [Lactobacillus reuteri JCM 1112]
          Length = 441

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 86/302 (28%), Gaps = 40/302 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G  GK+S  + +  +      +S+ IG    +     D R                
Sbjct: 113 IGIAGAHGKTSTTALLSHVLAAVEPTSYLIGD--GVGKGNADARFFVFEAD--------- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY        ++     +++
Sbjct: 162 ----------EYRDHFLAYH------PDYAIMTNVDFDHPDYFNDLADVRDSFETYGKQV 205

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +     + DD   +++     N    V   G         + +              
Sbjct: 206 ---QRAIFAWGDDPSLRDL-----NVDVPVYYYGTNPDDDFRAENIQRTPEGSTYDAYFR 257

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   L GE  V N+L    +     ++   + + L     V  RF    T+   
Sbjct: 258 DQKLGTFTIHLYGEHSVLNSLAVLAVAYMEHMNMDEIQQELANFSGVKRRFS--ETDIAD 315

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  + ++  +   R       +I VF                 +L  AD   
Sbjct: 316 TTIIDDYAHHPSEIKATIDAARQKYPDREVIAVFQPHTYSRLAAYIDGFAESLSRADKTF 375

Query: 415 VT 416
           VT
Sbjct: 376 VT 377


>gi|148544474|ref|YP_001271844.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri DSM
           20016]
 gi|227363098|ref|ZP_03847233.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           MM2-3]
 gi|325682796|ref|ZP_08162312.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           MM4-1A]
 gi|189028997|sp|A5VKY3|MURC_LACRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148531508|gb|ABQ83507.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri DSM
           20016]
 gi|227071816|gb|EEI10104.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           MM2-3]
 gi|324977146|gb|EGC14097.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           MM4-1A]
          Length = 434

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 86/302 (28%), Gaps = 40/302 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G  GK+S  + +  +      +S+ IG    +     D R                
Sbjct: 106 IGIAGAHGKTSTTALLSHVLAAVEPTSYLIGD--GVGKGNADARFFVFEAD--------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY        ++     +++
Sbjct: 155 ----------EYRDHFLAYH------PDYAIMTNVDFDHPDYFNDLADVRDSFETYGKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +     + DD   +++     N    V   G         + +              
Sbjct: 199 ---QRAIFAWGDDPSLRDL-----NVDVPVYYYGTNPDDDFRAENIQRTPEGSTYDAYFR 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   L GE  V N+L    +     ++   + + L     V  RF    T+   
Sbjct: 251 DQKLGTFTIHLYGEHSVLNSLAVLAVAYMEHMNMDEIQQELANFSGVKRRFS--ETDIAD 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  DYAH  + ++  +   R       +I VF                 +L  AD   
Sbjct: 309 TTIIDDYAHHPSEIKATIDAARQKYPDREVIAVFQPHTYSRLAAYIDGFAESLSRADKTF 368

Query: 415 VT 416
           VT
Sbjct: 369 VT 370


>gi|330981219|gb|EGH79322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 448

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 124/352 (35%), Gaps = 42/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T                    AL
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGT-------------------PAL 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             LS + V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 150 DLLSDE-VELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      +   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFNGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL--REH 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  Y + +  +N +   L  I  + S     +V+   G  +      +   +A      
Sbjct: 317 DGVHYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSGLRAPVAKYCRAA 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +P  +       A+  + ++  + D +++
Sbjct: 376 VLL------GRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLALRGDAVLL 420


>gi|90407782|ref|ZP_01215960.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
 gi|90311142|gb|EAS39249.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
          Length = 445

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 135/395 (34%), Gaps = 53/395 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS   +L   +     +    ++ +   F  +  +  Y      ++ +TG++GK++V 
Sbjct: 66  LVVSPGIALATPALQQVKDAGCELIGDIELFARVLKTPSYAH--AKVVTITGSNGKTTVT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S + ++   S L+    G   T +                      L    +    +E S
Sbjct: 124 SLLGEMASASPLNVAIGGNIGTPA--------------------LDLLDPNINLYILELS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +     +  N+  DH+D +++   Y  +K  ++++       A+   +D
Sbjct: 164 SFQLE--TTTSLNADIATILNISADHLDRYRSYDHYIQSKHIIYQQC----KKALFNIED 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---CAIHNKQQVTISVEGKDFDFLFPLP 307
           A +K +     +     +  G +     L K      I    +  ++V+         L 
Sbjct: 218 AQTKPL-----SCALDQICFGAENADFQLVKQNNETFISMGSETLLNVK------KLKLS 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+G+D  ++L  LE    +  R EFV        I         
Sbjct: 267 GRHNWMNALAALALGDAVGLDKNIMLAVLENYQGLEHRCEFVAQVHGVRWINDSKGTNVG 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           + +  L  +    SG++ V+   G  +      +         DI    +D         
Sbjct: 327 ATQAALMGLSQSISGKVHVIL-GGQGKGADFSLLRPVFNEVQGDIFCFGED--------- 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             A I    P      +  +A+  A +     D++
Sbjct: 377 -AALIASVDPRIQRVDDLAQAVCLAEQAATAGDIV 410


>gi|116629840|ref|YP_815012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           gasseri ATCC 33323]
 gi|238853968|ref|ZP_04644325.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311110519|ref|ZP_07711916.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
 gi|122273222|sp|Q042P8|MURD_LACGA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116095422|gb|ABJ60574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           gasseri ATCC 33323]
 gi|238833413|gb|EEQ25693.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311065673|gb|EFQ46013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
          Length = 460

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 109/350 (31%), Gaps = 34/350 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              + VTG++GK++     Q+I       +         I     +          L   
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMDHHLSKNGGHAYAVGNIGVPISEVVEKATDKDLLVVE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +S     GVT +                +  I   + N+   H+DYH+T   Y  AK+R+
Sbjct: 173 MSSFQLLGVTDIK-------------PKVAAIVDIYNNV---HLDYHKTFDNYVEAKLRI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   +    I   D     +   +   A  +  S   +     +             +
Sbjct: 217 -TQSQDQNDYFIANFDQKNILDRELKKTKAKVQTFSETDKTADYFIGDEYLESKDDHQIM 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG     N LVA  +   +G D + +   L        R ++V T  
Sbjct: 276 KISD------IKIPGIHNQQNCLVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMT-Y 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +IY D   T+  +E     I +       V+   G DR      ++      +  I 
Sbjct: 329 NDRKIYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFMFDSLVPLFKKYVKSIV 384

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 385 LYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|84501752|ref|ZP_00999924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           batsensis HTCC2597]
 gi|84390373|gb|EAQ02932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           batsensis HTCC2597]
          Length = 475

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 122/346 (35%), Gaps = 37/346 (10%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQ 134
           Y   +    +  +  + V ++   F    A R +G +     I+AVTG++GKS+ ++ + 
Sbjct: 88  YPEPNPVIALALDLGVPVDNDIGLFFRSAADRGWGDYDVQPRIVAVTGSNGKSTTSALIH 147

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + +  G  +   G                         L          V +E SS+  
Sbjct: 148 HVLESVGRDTQLAGNIG-------------------RGVLDIDPPGDGGVVVLELSSYQT 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           D  R   +      FTNL  DH+D H     YF AK RLF E  P  +   +  D+A  +
Sbjct: 189 DLAR--ALTPDVAVFTNLTPDHLDRHGGLGGYFAAKRRLFAEGGPDRAVIGV--DEAEGR 244

Query: 255 EVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VEGKDFDFLFPLPG 308
            +  +        RV+ +    K      +                V   D   +  LPG
Sbjct: 245 YLANQLGEGPTDDRVIRISSGQKLTGPGWLVYARKGFLTEWRKGRQVGSIDLRAIPGLPG 304

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NA  A   C A+G+   ++         +P R + V    RGG  YV+ +  +N 
Sbjct: 305 AHNHQNACAAYAACRALGLAPRVIESAFHTFAGLPHRSQIVAE--RGGVRYVNDSKATN- 361

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           ++   K +R     R I     G +++ G   ++      +    I
Sbjct: 362 VDAASKALRAFDRLRWIC---GGLEKEGGLEALLPATGSVIKAYVI 404


>gi|331083028|ref|ZP_08332147.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330399765|gb|EGG79426.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 457

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 105/294 (35%), Gaps = 24/294 (8%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + LS    ++   E SS  L+   +D       +  N+  DH++ H T + Y   K  L 
Sbjct: 154 AALSMTEDSYTVAEISSFQLE--TIDTFAPKVSAILNITEDHLNRHHTMEEYIRVK-ELI 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVT 292
                KE   I+  +D   +   +R         S     +G F+    +C   + + + 
Sbjct: 211 TANQTKEDYCILNYEDEVLRAFGERCPAKTVFFSSERKLGKGAFLDGDAICLKTDTETLE 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I   G+       + G+    N + A+ +    G+   ++ + + +   V  R EFV   
Sbjct: 271 IVKTGE-----LKILGKHNYENVMAASAMAYYTGVPVEVIHKAITEFRAVAHRIEFVDEI 325

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +             ++    ++ +   T     ++ G G D++      +      +  +
Sbjct: 326 NGIAYYNDSKGTNPDAAIKGIQAMNRPT-----LLIGGGYDKESSYEEWIQSFDGKVKYL 380

Query: 413 AIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++       +  EKI  E+ H  G    I   N  EA+    +   K D +++
Sbjct: 381 VLI------GQTREKI-QEVAHKCGFVNTILADNLEEAVSICTQKAEKGDAVLL 427


>gi|315038048|ref|YP_004031616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1112]
 gi|312276181|gb|ADQ58821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1112]
 gi|327183328|gb|AEA31775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1118]
          Length = 459

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 117/354 (33%), Gaps = 43/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I     Q+SG  ++ +G      S               
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD------ 166

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-HIDYHQTQQAYFNA 229
                         + VE SS  L    +  I     +  ++  + H+DYH+T + Y NA
Sbjct: 167 ------------DILVVEISSFQLL--GVTDIDPKVAAIVDIYHNVHLDYHKTFENYVNA 212

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K+         +   I   D        K+   A  +  S         +         +
Sbjct: 213 KLN-VTRTQTSDDYFIANYDQKDILAQEKKVSPAKMQTFSETDHNADYFIGDEYLESQNE 271

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++    +         LPG   + N+LVA  +   +G D+  +   L        R ++V
Sbjct: 272 KIMKIAD-------IKLPGIHNLQNSLVAIAISKIMGADNDDIAAVLSTFTGAKHRLQYV 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T   G ++Y D   T+  +E     I         V+   G DR      ++      +
Sbjct: 325 TT-LDGRKVYNDSKSTN--IEAATVAIPAFKEPE--VLIAGGLDRGFTFDDLVPLFKKHV 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I +  +      D  +       GI   +      EA+  A E+    DVL+
Sbjct: 380 KSIVLYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELTEPGDVLL 428


>gi|312874653|ref|ZP_07734677.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325912989|ref|ZP_08175362.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
 gi|311089883|gb|EFQ48303.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325477669|gb|EGC80808.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
          Length = 460

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 126/392 (32%), Gaps = 50/392 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 I----CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      + G  ++ +G    I     +  L   +   L   +S     GV  +      
Sbjct: 134 IMENHLHKLGGHAYAVG---NIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK----- 185

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +  I   + N+   HIDYH+T + Y  AK+R+  +   K    I   D  
Sbjct: 186 --------PKVAAIVDIYNNV---HIDYHKTFENYVAAKLRI-TQNQDKSDYFIANFDQK 233

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              E       A     S        ++ +           + +          +PG   
Sbjct: 234 NILEQELSLTKAHVVTFSEESTQADYYIGEQYLESQADHEIMKISD------IKIPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N+LVA  +   +G     +   L        R ++V T +   RIY D   T+  +E 
Sbjct: 288 QQNSLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNN-RRIYNDSKSTN--IEA 344

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
               I + +     V+   G DR      ++  +   +  I +  +      D  +    
Sbjct: 345 ASVAIPSFSQPE--VLIAGGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAAR---- 398

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              GI   +      EA+  A ++ N  DVL+
Sbjct: 399 -KAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|210134942|ref|YP_002301381.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12]
 gi|210132910|gb|ACJ07901.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12]
          Length = 493

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 141/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDINQNLDDKSEV----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++ V        +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDVS-----SLVKNIQSTLKGTSFEMLL 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + GEF  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 DSVWERFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L++IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLESIRLASLHQGRKVIVTPGLVESNTESNEALAQKIDGVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|291166345|gb|EFE28391.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Filifactor
           alocis ATCC 35896]
          Length = 449

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 94/295 (31%), Gaps = 22/295 (7%)

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                   H    +         +   K     F NL  DH++ H + + Y   K  +F+
Sbjct: 143 EAVRNADEHTWYVSELSSFQLEMIKEFKCHIAGFLNLTPDHLNRHGSLKTYGEMKSNIFK 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K+  A++  +D Y   + ++  +      +       I+LK+     N   +T  +
Sbjct: 203 NQT-KDDYAVLNYEDDYVCHLGEKLPSKVLYFSTKREVPFGIYLKEGYIYENITGITNKL 261

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +       L G   + N L+A  +     I    +   L     V  R EFV      
Sbjct: 262 FDRK---NVLLAGNHNMENVLMAMCMAYCANISFDCMKSVLSNFEGVEHRLEFVEMIDGV 318

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGKIALDLAD 411
             I        +     +K +        I++   G D+    D+      GK    +  
Sbjct: 319 RYINDSKGTNPD---ASVKAVEAFEKN--IILIAGGMDKKVPFDKFVETFTGKHLGKVKK 373

Query: 412 IAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++        + + I  +    HG        N  EA+  A +     D++++
Sbjct: 374 LILLG-------ETKNIIKDCAQKHGFDSVDLVNNMEEAVDVAHQQAEGGDIVLL 421


>gi|325281843|ref|YP_004254385.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
 gi|324313652|gb|ADY34205.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
          Length = 452

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 95/300 (31%), Gaps = 30/300 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G+ GK++  S +  + +  G+    +                          LS  
Sbjct: 106 VIVGGSHGKTTTTSMIMHVLKTCGIEFDYMAGALLEG-------------FDTMVHLSDR 152

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S   V       SS    + +           T +  DH++   T + Y   +  LF + 
Sbjct: 153 SKIAVFEGDEYLSSPIDRRPKFHHYHPDIAILTGIAWDHMNVFPTFENYVE-QFALFTQQ 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      I Y +D   +++  R                   +      H  ++ T  + G
Sbjct: 212 ITPNGKLIYYENDENLRQIASRVP------------ASVQAIPYTSFPHYTEEGTTYLAG 259

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + GE  + N   A   C  +GID    L+ +        R + +        
Sbjct: 260 -SLPTPIQVFGEHNLQNISAAYLACKELGIDETAFLKAIATYKGAAKRLQKI-AEQNDTV 317

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP--IMGKIALDLADIAIV 415
           +++D+AH+ + L+  +K +R       ++                   +  +DLAD AIV
Sbjct: 318 VFLDFAHSPSKLQATIKAVREQYPRHKLIACMELHTFSSLNAAFLPQYRHTMDLADEAIV 377


>gi|259501649|ref|ZP_05744551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|302191144|ref|ZP_07267398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           iners AB-1]
 gi|309803217|ref|ZP_07697314.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|312871630|ref|ZP_07731722.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
 gi|312873235|ref|ZP_07733291.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|259166934|gb|EEW51429.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|308164725|gb|EFO66975.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|311091246|gb|EFQ49634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|311092855|gb|EFQ51207.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
          Length = 460

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 121/389 (31%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I +               I     +  L   +   L   +S     GV  +         
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK-------- 185

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +  I   + N+   HIDYH+T + Y  AK+R+  +   K    I   D     
Sbjct: 186 -----PKVAAIVDIYNNV---HIDYHKTFENYVAAKLRI-TQNQDKSDYFIANFDQKNIL 236

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E       A     S        ++ +           + +          +PG     N
Sbjct: 237 EQELSLTKAHVVTFSEESTQADYYIGEQYLESQADHEIMKISD------IKIPGRHNQQN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +LVA  +   +G     +   L        R ++V T +   RIY D   T+  +E    
Sbjct: 291 SLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNN-RRIYNDSKSTN--IEAASV 347

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I + +     V+   G DR      ++  +   +  I +  +      D  +       
Sbjct: 348 AIPSFSQPE--VLIAGGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAAR-----KA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A ++ N  DVL+
Sbjct: 401 GIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|255021544|ref|ZP_05293587.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968932|gb|EET26451.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 460

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 129/421 (30%), Gaps = 58/421 (13%)

Query: 60  IPQAIAQG--AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           +  A+++G  A   V++         A +           TR+ L+             I
Sbjct: 67  VGNALSRGNPAVEAVLAEGIPYDSGPAWL-----------TRELLA----------GRWI 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++  S +  I + +GL+   +     I    ++     P    L     ++
Sbjct: 106 LAVAGTHGKTTTTSMLAWILEYAGLAPGFL-----IGGAPRN----FPESGRLGSGPFFV 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                   +          +R            +L  DH D +    A    +       
Sbjct: 157 IEADEYDTAFFDKRAKFVHYR-----PRTVILNHLEYDHADIYPDLAAI-ETQFHYLLRT 210

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P     +  +     + V+  A       +     G    LK      +  Q+ +    
Sbjct: 211 VPANGQVLYRSGIPALERVL--ARGCWSEAIPF-ADGADWDLKLEDPAGSAWQI-LEDGR 266

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 + L G F   N L A      +G+  A     L     V  R E  G  +   R
Sbjct: 267 AVGQVEWDLYGRFNAENGLAAILAARHVGVPVASSCAALAHFAGVRRRLEERGRVAD-IR 325

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIV 415
           +Y D+AH   ++   L+ +R     GR++ V          G        +L  AD   V
Sbjct: 326 VYDDFAHHPTAIAATLRALRARQPHGRLLAVLEPRSNTMRLGVHRGQLAESLAAADAVFV 385

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG-----H 469
                    P  +  ++   +       + ++ +  A+       D ++V   G     H
Sbjct: 386 YA-------PPDLSWDVAAALGQPERVFSDLDMLVDAVATSARPGDHILVMSNGGFGGIH 438

Query: 470 E 470
           E
Sbjct: 439 E 439


>gi|317014152|gb|ADU81588.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori
           Gambia94/24]
          Length = 493

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 137/352 (38%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q    +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   A  Y+     +++   A                  ++ + +        + +
Sbjct: 277 S--KRLEKAFCYS----VEKIKPYAPKDSLLTDVSSL------VRNIQSTLKGTSFEMLL 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + GEF  YN   A  +   +G+++  +   +  L+ +  R + +  N + 
Sbjct: 325 DSVWERFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLDLNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLHQGRKVIVTPGLVESNTESNEALAQKIDEVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|227494646|ref|ZP_03924962.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
 gi|226831828|gb|EEH64211.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
          Length = 494

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 140/406 (34%), Gaps = 42/406 (10%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            VVS         FS    +N P+     +   L+       GK     LA+TGT+GK++
Sbjct: 80  AVVSPGIPPHSASFSGLTAANVPVW----SEVELAWQIQHTLGK-DIKWLAITGTNGKTT 134

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V  I + +G     +G                         ++ +    V  ++VE
Sbjct: 135 TVGLVGSILEAAGAKYAVVGNVG-------------------EPIVTTVLKADVEVLAVE 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAI 245
            SS  L+      +  +A    N+  DH+D+H + + Y +AK R++E        +    
Sbjct: 176 LSSFQLE--TTHTLSPLAAVCLNVDADHLDWHGSVENYRDAKARIYENTQVGCVYDVTDR 233

Query: 246 IYADDAYSKEVMKRAHNAGCRVLS-----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              +     EV++ A   G  + S     +G   K +  +      + Q   ++     F
Sbjct: 234 TVENMVAGAEVIEGARAIGYTLGSPAPSQIGLVEKLLVDRAFVENRHHQAEAVAEISDIF 293

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F    P    V + L A  L  A G+    V   L        R   +G  +    +++
Sbjct: 294 GFASEHPSIALVKDTLAAIALTRAYGVSGEAVAAGLRNFKSAKHRRAVIGKTAD--VVWI 351

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-N 419
           D +  +N+               + +    G  + Q    ++  I   L  + ++  D  
Sbjct: 352 DDSKATNTHAAKASLAGFPPQSVVWI--AGGDTKGQELHSLVADIKDCLRGVVVIGADPT 409

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           P  E  +   AEI + +    E       +  A+ +    + +V+A
Sbjct: 410 PVVEALQTNAAEIPYVVVDGHEDM-MFSVVNEAVALSLPGNTVVLA 454


>gi|309804760|ref|ZP_07698824.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
 gi|308165870|gb|EFO68089.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
          Length = 460

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 122/389 (31%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I +               I     +  L   +   L   +S     GV  +         
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK-------- 185

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +  I   + N+   HIDYH+T + Y  AK+R+  +   K    I   D     
Sbjct: 186 -----PKVAAIVDIYNNV---HIDYHKTFENYVAAKLRI-TQNQDKSDYFIANFDQKNIL 236

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E     + A     S        ++ +           + +          +PG     N
Sbjct: 237 EQELSLNKAHVVTFSEESTQADYYIGEQYLESQADHEIMKISD------IKIPGRHNQQN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +LVA  +   +G     +   L        R ++V T +   RIY D   T+  +E    
Sbjct: 291 SLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNN-RRIYNDSKSTN--IEAASV 347

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I + +     V+   G DR      ++  +   +  I +  +      D  +       
Sbjct: 348 AIPSFSQPE--VLIAGGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAAR-----KA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A ++ N  DVL+
Sbjct: 401 GIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|315122417|ref|YP_004062906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495819|gb|ADR52418.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 468

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 102/310 (32%), Gaps = 34/310 (10%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           R +       +AVTGT+GKSS    +  I  ++G      G                   
Sbjct: 106 RRFSTFHSPFIAVTGTNGKSSTVMLISHILNQNGYDVQLGGNIGN--------------- 150

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 L+           +E SS+ +D      I    G   N+  DH+D H T + Y 
Sbjct: 151 ----PILNLADFSSHRFYVIECSSYQIDL--TPTIDPSIGVLLNVSIDHLDRHNTLENYA 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K +L      K   A+I  +D   K V      AG  +  +  Q             +
Sbjct: 205 RIKKKLVA----KSQHAVICMNDDLCKTVASDMATAGHSMTRISSQ---PMPSDSDFYID 257

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +  S   K    L      + ++N   +  +C+ +G+    +   +   + +  R +
Sbjct: 258 GSHIKCSSTSKTIFALSQEDRRYNMHNVAASIAVCMRLGLKIDEIKRAISSFNGLTHRLQ 317

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +     G  I+++ +  +N    +   +    + + ++ +  GG        I+     
Sbjct: 318 KIA--QLGQVIFINDSKATN----LHSVMHAFLNEKRVIYWIGGGLSKSDDFSIIFPFLS 371

Query: 408 DLADIAIVTD 417
            +A    + D
Sbjct: 372 KVAKAYFIGD 381


>gi|332653809|ref|ZP_08419553.1| tetrahydrofolate synthase [Ruminococcaceae bacterium D16]
 gi|332516895|gb|EGJ46500.1| tetrahydrofolate synthase [Ruminococcaceae bacterium D16]
          Length = 422

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 142/415 (34%), Gaps = 68/415 (16%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG------------------------LSSFQIGPTS 151
             + +TGT+GK S A+ V  I  ++G                        +S   +G   
Sbjct: 40  KFIHITGTNGKGSTAAMVSSILTQAGLRTGLYTSPHLWTFHERFQVDGVPISDAMLGELG 99

Query: 152 TISSFAQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +   A +     P+   L  A  L +        V +E    G            A   
Sbjct: 100 ELVIKAGEGMEDPPTEFELMTALGLEFFLRMKCDIVVLEVGLGGRLDSTNVIPAPEAAVI 159

Query: 210 TNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           TN+G +H      ++      K      ++ K    ++Y      ++V+K A       L
Sbjct: 160 TNIGLEHTQELGNSRTLIAQEK----SGIIKKGCSTVLYHQSGEVEDVVKEACRQMESPL 215

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG-- 326
           +V        L+ + +  + Q      +G    +   L G  Q+YNA+ A      +   
Sbjct: 216 TVT---APQTLEVLESNRDGQTFRYRGKG---PYHISLLGPHQLYNAMTALDTIWTLSHR 269

Query: 327 ---IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              I    V + LE       R E V    R   I +D  H    +  +   +  +  G+
Sbjct: 270 GWKIKEQAVAQGLENAVWP-ARLELV---RRNPDILLDGGHNPQCMAALHDALEELYPGK 325

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
             ++F  G   D+    ++ KI         +T D+PR+   ++  A+ +HG+       
Sbjct: 326 K-MIFLTGVLGDKDYPDMINKILPLAKSFVTITPDSPRALSAQE-LADYLHGLGIQADAC 383

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           E     + I+ A+ +   +DV+   G       I   GE         +R +LGL
Sbjct: 384 ETT--EQGIQQALALAGPEDVVCACGS---LYMI---GE---------VRHLLGL 421


>gi|224824594|ref|ZP_03697701.1| UDP-N-acetylmuramate [Lutiella nitroferrum 2002]
 gi|224603087|gb|EEG09263.1| UDP-N-acetylmuramate [Lutiella nitroferrum 2002]
          Length = 458

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 119/368 (32%), Gaps = 20/368 (5%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +     + +LAV GT GK++ +S +  I + +GL+   +     I    Q+  +
Sbjct: 93  QWLAENVLAD--KWVLAVAGTHGKTTTSSMLAWILEDAGLAPGFL-----IGGIPQNFGI 145

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P   A   +  S   V       ++    + +            NL  DH D    
Sbjct: 146 SARLPGAPALDPASRSPFFVIEADEYDTAFFDKRSKFVHYHPRTAVLNNLEFDHADIFAD 205

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P     I    +A   EV++  H     V   G +  +      
Sbjct: 206 LAAI-QTQFHHLVRTVPGNGRLISNGREASLDEVLE--HGCWTPVERFGVEAGWQLADVD 262

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              H    +   ++G+     + L GE    NAL A       G+     +  L +   V
Sbjct: 263 DQGHFDVLLGGELQGR---VRWDLLGEHNRLNALAAIAAARHAGVAVKDAINALARFQNV 319

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E  G  + G  +Y D+AH   ++   L+ +R       I+              + 
Sbjct: 320 KRRMEVRGVAA-GVTVYDDFAHHPTAIATTLEGLRRKVGRSPILAVLEPRSNTMKLGTMK 378

Query: 403 GKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             +  AL  AD       N    DP +  A +      F +    I AI   +       
Sbjct: 379 AALPGALTEADQVFCYGANLGW-DPAEALAPLGDKAASFNDLERLIAAI---VARAEPGS 434

Query: 461 VLVVAGKG 468
            ++V   G
Sbjct: 435 HVLVMSNG 442


>gi|282851650|ref|ZP_06261015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
 gi|282557618|gb|EFB63215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
          Length = 446

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 109/350 (31%), Gaps = 34/350 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              + VTG++GK++     Q+I       +         I     +          L   
Sbjct: 99  APYVCVTGSNGKTTTVMLTQRIMDHHLSKNGGHAYAVGNIGVPISEVVEKATDKDLLVVE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +S     GVT +                +  I   + N+   H+DYH+T   Y  AK+R+
Sbjct: 159 MSSFQLLGVTDIK-------------PKVAAIVDIYNNV---HLDYHKTFDNYVEAKLRI 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   +    I   D     +   +   A  +  S   +     +             +
Sbjct: 203 -TQSQDQNDYFIANFDQKNILDRELKKTKAKVQTFSETDKTADYFIGDEYLESKDDHQIM 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG     N LVA  +   +G D + +   L        R ++V T  
Sbjct: 262 KISD------IKIPGIHNQQNCLVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMT-Y 314

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +IY D   T+  +E     I +       V+   G DR      ++      +  I 
Sbjct: 315 NDRKIYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFMFDSLVPLFKKYVKSIV 370

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 371 LYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELSEAGDVIL 415


>gi|254416325|ref|ZP_05030078.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196176763|gb|EDX71774.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 869

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 134/356 (37%), Gaps = 29/356 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T   +  D+ +          A   L    V    +E + 
Sbjct: 479 LLAHIYKQTGHV---VGYTTTDGIYIGDHLVEQGDTTGPQSAQVILKDPTVEVAVLETAR 535

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +     A++ A+D
Sbjct: 536 GGILRSGLAFDACDVGVVLNVSADHLGIGDIDTLDQMAHLKSVVAESVSPAGYAVLNAED 595

Query: 251 AYSKEVMKRAHNAGCR---------VLSVGYQGKFIHLKKVCAIH-NKQQVTISVE-GKD 299
               E+ +R                V +   QG    + +   +   + + T+ +E  ++
Sbjct: 596 PLVTEMAQRVKGHVAFFSMNPDNEVVKAHTRQGGLAGVYENGYLSLIRGEWTLRIEKAEN 655

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRG 355
                     FQ+ NAL A+    A G+    + + L          PGR          
Sbjct: 656 MPVTMRGMAPFQIANALAASLAAFAQGVPIEAIRDALTTFRASVAQTPGRMNLFNLGEYH 715

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH + S E +   +R  +  R+ VV G G  RD+    + G+++ D+ D  I+
Sbjct: 716 ALV--DYAHNAASYEAVGGFVRNWSGERVGVVGGPGDRRDEDFINL-GRLSADIFDRIII 772

Query: 416 TDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +D      P  E  E IR  I+   P   +    N  +AI TA++ +    ++V+
Sbjct: 773 KEDADLRGRPSGEAAELIRKGILETNPDREYEIILNETDAINTALDGVASGGLVVI 828


>gi|167586076|ref|ZP_02378464.1| UDP-N-acetylmuramate [Burkholderia ubonensis Bu]
          Length = 464

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 113/358 (31%), Gaps = 24/358 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     +      +   T S  ++ +A  Y
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL--IGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++                       +       NL  DH D      A    +      
Sbjct: 163 DTAFFDKRSKFVHY------------RPRTAVLNNLEFDHADIFPDLAAI-ETQFHHLVR 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     +    +A  + V+ R       V   G  G +  L     +   ++  +   
Sbjct: 210 TVPGVGRLVSNGREAALERVLAR--GCWSEVERFGVDGGWQALAAEDGVPVDERFAVYWR 267

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   +  + + GE    NAL A      +G+  A     L     V  R E  G +  G
Sbjct: 268 GERLGEVAWQVQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRMEVRG-SVNG 326

Query: 356 GRIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             +Y D+AH   ++E     L+      + RI+ V     +  +         A      
Sbjct: 327 VTVYDDFAHHPTAIETTIAGLRARIGQQNARILAVLEPRSNTMKLGVMKSQLPASLADAD 386

Query: 413 AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +     P   D     +   +           +  + +   + +    D ++V   G
Sbjct: 387 LVFGYGAPAGRDALGWNLGEALAPLGGKAHAFDDLHQLVTAVVAVARPGDHVLVMSNG 444


>gi|311748591|ref|ZP_07722376.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Algoriphagus
           sp. PR1]
 gi|126577115|gb|EAZ81363.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Algoriphagus
           sp. PR1]
          Length = 450

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 108/319 (33%), Gaps = 18/319 (5%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
           + L         +E SS  +D       K      TN+  DH+D ++     Y  +K  L
Sbjct: 143 AQLLEGDHDWWVIECSSFQID--GFVCFKPAVALLTNITPDHLDRYEYKVDNYIQSKFGL 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+ +  ++        D  ++  +K   +   +           +   +       Q+  
Sbjct: 201 FKNMSDEDQVIF-NQTDPLTEIGLKTL-SVKPKTYWFSSTSNINNGGSLNGEFLHWQLDD 258

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            V          L GE  + NAL A  + + +G+    + + L      P R E V    
Sbjct: 259 KVVQIPLSA-MSLQGEHNIQNALCAGLIALLVGVKKDTIQQSLGSFTNAPHRMELV-REI 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G +   D   T+  +E     +    +  I +    G D+    + +   +   +  + 
Sbjct: 317 EGVKFINDSKGTN--VEATAYALDAFQNPLIWI--AGGVDKGNDYQTVKSIVEEKVKCLI 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            +  DN      EK++      +    E  +  EA+R    +    DV++++     +  
Sbjct: 373 CLGKDN------EKLKKAFHPLVGEIKETQDIKEAVRWGQLLAVPGDVVLLS-PACASFD 425

Query: 474 IVTNGEKKMSVDCDIIREI 492
           +  N E +       ++E+
Sbjct: 426 LFKNYEDRGDQFRSAVKEL 444


>gi|50955151|ref|YP_062439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leifsonia
           xyli subsp. xyli str. CTCB07]
 gi|62900514|sp|Q6AE62|MURD_LEIXX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50951633|gb|AAT89334.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 517

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 144/418 (34%), Gaps = 48/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF---ASRLYGKHPENILAVTGT 123
           G E IVVS  +              I V  +      L    A    G  P + + VTGT
Sbjct: 85  GPELIVVSPGFHADHPLLLWADQQGIPVWGDIELAWRLRDKTAPPGSGNSPADWICVTGT 144

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++       +    G      G                     +A   +    QG  
Sbjct: 145 NGKTTTVQLTATMLLAGGSRVAPCGNIG------------------VAVLDAIRDPQGFD 186

Query: 184 HVSVEASSHGLD-QHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            + VE SS+ L   +R  G  +   A +  N+  DH+D+H + +AY  AK +++E    +
Sbjct: 187 VLVVELSSYQLHWINRNAGGEVSPYAAACLNIADDHLDWHGSLEAYAAAKAKVYEN--AQ 244

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--------FIHLKKVCAIHNKQQVT 292
            +     AD+A  + V +     G R +  G               L     + ++    
Sbjct: 245 VACVYNRADEATLRMVEETEVVEGARAIGFGLDVPGPSDFGIVDGILCDRAFLDDRLHSA 304

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I +   +      L     V N L A+ L  A G++  +V + L    +   R E V   
Sbjct: 305 IELTTLEELREAGLAAPHIVANILAASALARAYGVEPWVVRDVLSAFRLDAHRIELVRIE 364

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    +    A   ++ +  L+   ++    + VV   G  +      ++ + A  L   
Sbjct: 365 AGVSWVDDSKATNPHAADASLRAYPSV----VWVV--GGLFKGVDLDGLVKRHAARLRGA 418

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVA 465
            ++  D        +  A    G+P      +  E     A+R A  ++   D +++A
Sbjct: 419 VLIGADRDLLRSAFQRHA---PGLPVVEVDADETEHVMPTAVRLAAALVRDGDTVLLA 473


>gi|89074172|ref|ZP_01160671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium sp. SKA34]
 gi|89050108|gb|EAR55634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium sp. SKA34]
          Length = 446

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 138/400 (34%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L      + +   I +V +   F             + ++A+TG++GKS
Sbjct: 69  ADLIVASPGIALATPELVVAAEAGIEIVGDIELFAREV--------DKPVVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G     +G    I                   AL  L+ Q   +  +
Sbjct: 121 TVTSLVGEMAKEAG---VNVGVGGNIG----------------FAALDMLAQQHALY-VL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++L A  + NL  DH+D +      Y  AKMR+F+        A+ 
Sbjct: 161 ELSSFQLE--TTTSLELTAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH----AKLAVF 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
             DD     +  +       + S G+  +   +  V          ++V G+    +   
Sbjct: 215 NRDD-----LATKPTQFSGAMTSFGFDDQDYGIVLVDGKEW-----LAVNGEAVMAVTDI 264

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   V N L A  L  A GI        +++   +  R +    N  G R   D   
Sbjct: 265 ALVGRHNVANCLAALALADAAGIPRDAAYRAMQRYTGLAHRCQL-AVNRHGVRWVNDSKA 323

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T+  L   L  +  +     + +   G  +      +   +A     +     D      
Sbjct: 324 TN--LASTLAALNGLQLEGKLHLLMGGDSKGAEFSELKPILADLNVQLYSFGRD------ 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  ++   +   I      +A+      +   D++++
Sbjct: 376 -RHLFNDV---VDNAISVETMKDAMVCISRTVQSGDMVLL 411


>gi|295098380|emb|CBK87470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 445

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 120/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 91  RWVVAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 149 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 196

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+  +D   K+ M  A         VG QG     KK+ A  ++ +V + 
Sbjct: 197 -RIVPGQGRIILPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKLNADASEWEVLLD 252

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 253 GE-KVGEVKWGLVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EAH 310

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RI+ V     +  +          +L  AD
Sbjct: 311 GVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGICKDDLAPSLGRAD 370

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       I+  +    +    +M        D ++V   
Sbjct: 371 EVFLLQ-------PQHIPWQVAEVADACIQPAHWSADVDVLADMVVKAAQPGDHILVMSN 423

Query: 468 G 468
           G
Sbjct: 424 G 424


>gi|261749339|ref|YP_003257024.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497431|gb|ACX83881.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 467

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 128/350 (36%), Gaps = 37/350 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+++TG++GK++ +  V +I Q+ G      G                       ++ S 
Sbjct: 110 IISITGSNGKTTTSYIVYKILQKEGFHVEIAGNIG--------------------RSFSR 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235
              +      +E SS  LD       +       N+ RDH+D YH   ++Y ++K R+  
Sbjct: 150 EVLKKKDVYVLEVSSFQLDD--CYNFRSNIAVLLNITRDHLDRYHNDIESYISSKFRIST 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +   KE   I   DD   ++  K+        +    Q +      +       +   + 
Sbjct: 208 QQ-NKEDIFIYNHDDPLIRKGFKKYP-ILSNCIPFSIQEELCVGAYLKENKIFFRNKFNQ 265

Query: 296 EGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           E         PL G+  +YN L +  + + + +    ++  +  L  +  R E V  N  
Sbjct: 266 ERCLLHVDKIPLKGDHNLYNILASVLVSVTLNVRKTSMIHPILGLKSIEHRMEKV-LNIN 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G +   D   T+  +  +   ++++ +  I +    G D+    R I+  +   +  I  
Sbjct: 325 GVQFINDSKATN--VNAVFYALKSMKAPTIWI--AGGKDKGNDYREILPLVKEKVKAIIF 380

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +N +        +     I    E  +  +A+R A  +    D +++
Sbjct: 381 LGKNNKKF------ISFFQDVIDIIFETNSLKKAVRMAYILSIHGDNILL 424


>gi|104773824|ref|YP_618804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|118595661|sp|Q1GAT6|MURD_LACDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|103422905|emb|CAI97567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 460

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 127/355 (35%), Gaps = 44/355 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQI----CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     QQI     Q+ G  +  +G      S    N+        L
Sbjct: 113 SPYVCVTGSNGKTTTVMLTQQIMDHYLQKQGHHAHAVGNIGCPISEVVLNQAGPDD--LL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S     GVT +                +  I   + N+   H+DYH+T   Y +AK
Sbjct: 171 VVEMSSFQLMGVTDIE-------------PKVAAIVDIYNNV---HLDYHKTFDNYVDAK 214

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           +     +   +  +  +  +   K+++ R   A   ++L+            V   +  Q
Sbjct: 215 L----NVGRFQKASDYFLANFDQKDILAREEKATKAKILTFSEN------DPVADFYIGQ 264

Query: 290 QVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +  E K        LPG   + N+LVA G+   +G     +   L        R ++
Sbjct: 265 DYLMHGEEKMMKIADIKLPGIHNLQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQY 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T   G ++Y D   T+  +E     I++       V+   G DR      ++      
Sbjct: 325 VTT-LDGVKVYNDSKSTN--IEAATVAIQSFKQPE--VLLAGGLDRGFVFDSLVD--LFK 377

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               AIVT    R    +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 378 KHVKAIVTYGETRYLLADAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|309807734|ref|ZP_07701668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168994|gb|EFO71078.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
          Length = 460

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 121/389 (31%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I +               I     +  L   +   L   +S     GV  +         
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK-------- 185

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +  I   + N+   HIDYH+T + Y  AK+R+  +   K    I   D     
Sbjct: 186 -----PKVAAIVDIYNNV---HIDYHKTFENYVAAKLRI-TQNQDKSDYFIANFDQKNIL 236

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E       A     S        ++ +           + +          +PG     N
Sbjct: 237 EQELSLTKANVVTFSEESTQADYYIGEQYLESQADHEIMKISD------IKIPGRHNQQN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +LVA  +   +G     +   L        R ++V T +   RIY D   T+  +E    
Sbjct: 291 SLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNN-RRIYNDSKSTN--IEAASV 347

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I + +     V+   G DR      ++  +   +  I +  +      D  +       
Sbjct: 348 AIPSFSQPE--VLIAGGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAAR-----KA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A ++ N  DVL+
Sbjct: 401 GIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|77361222|ref|YP_340797.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (murein peptide ligase)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876133|emb|CAI87355.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 451

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 95/306 (31%), Gaps = 26/306 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ AS +  I + +GL    +     I    Q+  ++         
Sbjct: 101 QNSWVLAIAGTHGKTTTASMLAWILEYAGLKPGFL-----IGGIVQNFGVSAKVGETPFF 155

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +                 H L                NL  DH D  +   A       
Sbjct: 156 VIEADEYDTAFFDKRSKFVHYL---------PRTLILNNLEFDHADIFEDLNAIKKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P+    I   DD    +V+ +   +    L + +  + I            +  
Sbjct: 207 LI-RTVPQSGKVIWPKDDQALSDVITQGLWSESETLGIDWNYELIKAD-------GSEFK 258

Query: 293 ISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + +   K     +   GE  V NA++A      +GI     +  L +      R E    
Sbjct: 259 VFLNNEKQGTVNWQAMGEHNVKNAIMAIAAARHVGIAVEHSIAALGEFISPKRRMEL-KA 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDL 409
           +    ++Y D+AH   +++  L  +R       I+            G        +L  
Sbjct: 318 DINNIKVYDDFAHHPTAIQTTLAGLRAKVGSDKIIAILEPRSNTMKMGVHQHTLLASLSD 377

Query: 410 ADIAIV 415
           AD  ++
Sbjct: 378 ADEVLL 383


>gi|319788248|ref|YP_004147723.1| UDP-N-acetylmuramate [Pseudoxanthomonas suwonensis 11-1]
 gi|317466760|gb|ADV28492.1| UDP-N-acetylmuramate [Pseudoxanthomonas suwonensis 11-1]
          Length = 467

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 127/364 (34%), Gaps = 38/364 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVV-DNTRKF---LSLFASRLYGKHPENILAVTGTSG 125
           A + ++A  +   +A  R N  +  V D+ R++       A R+        LAV GT G
Sbjct: 57  AHISAAAEEVVIGNALSRGNAAVEQVLDDGRRYTSGAQWLAERVL--PGRTTLAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  + Q +G     +     +   A+D      +   +     ++        
Sbjct: 115 KTTTTSLLAFLLQAAGRDPGFL-----VGGVAED----FGTSARIGSGREFVVEADEYDT 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +          +R            NL  DH D      A       L    +P+    +
Sbjct: 166 AFFDKRSKFVHYR-----PTVAILNNLEYDHADIFPDLAAIQRQFHHLV-RTVPRAGRLV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-----------IHLKKVCAIHNKQQVTIS 294
           +  +DA+  EV+  A      + + G +G                       +     + 
Sbjct: 220 VNGEDAHLAEVL--AMGCWTPLETFGLEGADVAIARAGGGSGFDWSARLLAADGSAFVVL 277

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G++    L+PL G   V NAL A     A+G+  A V   L   H V  R E +G  +
Sbjct: 278 QDGREVATVLWPLLGRHNVMNALAALAAAHAVGVAPADVAPALAGFHSVKRRLEVLGEPA 337

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
            G  +Y D+AH   ++   L+ +R       IVV                 +A  LDLAD
Sbjct: 338 -GITVYDDFAHHPTAIRTTLEGLRAKVGDARIVVAMEPRSNSMRLGAHADALAPSLDLAD 396

Query: 412 IAIV 415
           + + 
Sbjct: 397 VVVF 400


>gi|300813304|ref|ZP_07093659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512575|gb|EFK39720.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 438

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 113/288 (39%), Gaps = 18/288 (6%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L ++    + +EASS  L+       K      T + +DH+D+H+T+  Y NAK ++F  
Sbjct: 142 LEAKNNDFIVIEASSFQLED--THEFKPKVALLTYVTKDHLDWHKTEDNYRNAKYKIFAN 199

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K+  +II  DD  S++ +K   +      +     +   L     I     +     
Sbjct: 200 Q-DKDDFSIINYDD-RSRDDLKDLKSNIYYFSTEKKDIRGCFLDDGKIIFKDGDIREE-- 255

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V N + A  +     I + ++ + ++    V  R EFV   +   
Sbjct: 256 -IIDIKDIKIPGIHNVKNVMGAIIIAKIFNISNDIIKQSIKIFSGVEHRIEFVKKVNDVS 314

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                     +S    L  ++ +T+  I++  G G D+      +M  IA +L  + +  
Sbjct: 315 FYNDSKGTNPDS---TLVAVKAMTNKTILI--GGGYDKGSDFNSLMENIAPNLRSLIVFG 369

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+     K      +GI  FI K +   A++  + +  K D +++
Sbjct: 370 QTGPKMAKEAK-----NYGIEVFIVK-DLPAAVKLGVSLAKKGDSILL 411


>gi|126651320|ref|ZP_01723527.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. B14905]
 gi|126591849|gb|EAZ85932.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. B14905]
          Length = 437

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 96/302 (31%), Gaps = 38/302 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG  GK+S    +  +      +S+ IG   T +  A  +     +  Y    L+Y 
Sbjct: 104 IAITGAHGKTSTTGLMAHVVGGYKPTSYLIG-DGTGAGHANADFFVMEACEYRRHFLAY- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                           TN+  DH DY       ++A   L  ++
Sbjct: 162 -------------------------NPDYAVMTNIDFDHPDYFANIDDVYSAFQSLALQV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +   I   DD   + +  +           G +  F   + V       +  + V  
Sbjct: 197 ---KKAIIACGDDEQLQRIQAKVPVVY---YGFGSENDF-EARNVEKTTEGTKFDVFVRN 249

Query: 298 KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + +  F  PL G+  + N L    LC   GI   ++ + L     V  RF          
Sbjct: 250 EFYSTFFIPLFGDHAILNTLAVITLCEYEGISPDIIQDRLHTYKGVKRRFTETDIGDN-- 307

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +  DYAH    +   +++ R       ++ +F                 +L LAD A +
Sbjct: 308 VLIDDYAHHPTEIRATIQSARQKFPDRELVAIFQPHTFTRTQAFLQDFADSLSLADTAYL 367

Query: 416 TD 417
            D
Sbjct: 368 CD 369


>gi|149907492|ref|ZP_01896239.1| UDP-N-acetylmuramate-alanine ligase [Moritella sp. PE36]
 gi|149809162|gb|EDM69091.1| UDP-N-acetylmuramate-alanine ligase [Moritella sp. PE36]
          Length = 457

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 110/337 (32%), Gaps = 20/337 (5%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A +GT GK++ A+ V  I + +GL    +     +     ++        ++ +A  Y
Sbjct: 93  VIAASGTHGKTTTAAMVAWILEYAGLEPGFL--IGGVPQNFTESARLGGGYFFVIEADEY 150

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++                       +       NL  DH D      A    +      
Sbjct: 151 DTAFFDKRSKFVHY------------QPNTLIMNNLEYDHADIFPDLAAIQR-QFHHVVR 197

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV 295
            +P     ++  +     EV  +      + L   Y+G    H +      +  Q  +  
Sbjct: 198 TVPSNGLILMPDNVPALDEVKAQGCWTPVQCLGAEYRGVDGSHWQAKKLRADASQFEVYC 257

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G+      + L GE  + N ++A       G++ +  +  L +      R E V    +
Sbjct: 258 KGELAGVVKWNLIGEHNLQNGMMAIAAAHYAGVELSQAITGLGEFKTPKRRME-VKGEVQ 316

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADI 412
           G R+Y D+AH   ++   L  +R       I+                  +A    LAD 
Sbjct: 317 GIRVYDDFAHHPTAIATTLAGLRAAVGNERIIAVLEPRSNTMRMGTHQQALAQSLTLADD 376

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            ++        D + +  E+           NR +A+
Sbjct: 377 VLLYQPEGLDWDLQPVADELCAEHSLRQGVDNRDKAV 413


>gi|195941036|ref|ZP_03086418.1| putative ligase [Escherichia coli O157:H7 str. EC4024]
          Length = 457

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 120/361 (33%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVVAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+  +D   K+ +  A         VG QG     KK+ A  ++ +V + 
Sbjct: 209 -RIVPGQGRIILPENDINLKQTL--AMGCWSEQELVGEQG-HWQAKKLNADASEWEVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-KVGEVKWGLVGEHNMHNGLMAIAAARHVGVLPADAANALGTFINARRRLELRG-EAN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RI+ V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGICKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       I+  +    +    +M        D ++V   
Sbjct: 383 EVFLLQ-------PQHIPWQVAEVADACIQPAHWSADVDVLADMVVKAAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|197302584|ref|ZP_03167639.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
 gi|197298482|gb|EDY33027.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
          Length = 457

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 109/282 (38%), Gaps = 26/282 (9%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   ++  +    +  N+  DH++ H T +AY  AK  + +    +++  + Y
Sbjct: 170 EMSSFQLE--TIETFRPRVSAILNITPDHLNRHHTMEAYIAAKENIAKNQTEEDTCVLNY 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----L 303
            D        +       +VL    Q     + +     + +++ +S+ G+  +      
Sbjct: 228 ED----AVTRQFGETLKAKVLYFSSQ----RILEEGIYLDGEKIVLSLNGEKTEICTVNE 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G     NA+ AA +  A G+   ++ + L++   V  R EFV    + G +Y + +
Sbjct: 280 LNILGTHNHENAMAAAAMAAAYGVPVEIIRKTLKEFQGVEHRIEFVAE--KDGVVYYNDS 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +N  +  +K I+ +   R  V+ G G D+D      +      +  + ++        
Sbjct: 338 KGTNP-DAAIKGIQAM--NRPTVLIGGGYDKDSAYDEWINAFDGKVKKLVLI------GA 388

Query: 424 DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             EKI       G    +      EA    +E     D +++
Sbjct: 389 TREKIAQTAEKLGFHEIVMADTFEEAFEKCVEYAEPGDAVLL 430


>gi|226941971|ref|YP_002797045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Laribacter
           hongkongensis HLHK9]
 gi|226716898|gb|ACO76036.1| MurD [Laribacter hongkongensis HLHK9]
          Length = 456

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 86/468 (18%), Positives = 162/468 (34%), Gaps = 54/468 (11%)

Query: 33  VSSDSRHIQA--GWIF-VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           V +DSR +    G +  VA  G +     F   A   G + +V+S    L   +    + 
Sbjct: 36  VVADSREVPPNAGQLAGVA-AGAELRAGAF-SAATFAGCDVLVLSPGVPLATPAVAAFAG 93

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I  V+   + ++  A          ++A+TG++GK++V S    +    G      G 
Sbjct: 94  EVIGDVEVFARAIAPLA--------IPVIAITGSNGKTTVTSLAGHLVAACGRRGVVAGN 145

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                               +  AL+ + + G                    +  IA + 
Sbjct: 146 IGL----------------AVLDALADIEASGELPECFVLELSSFQLETTTSLNAIAATT 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+  DH+D ++   AY ++K  +F          ++  DD + + + +          S
Sbjct: 190 LNISEDHLDRYRDLLAYADSKAAVFNG----GGVQVLNRDDLFVRAMAR--PQRRHVWFS 243

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +   G    L +    H      +   G+         L G     NAL A  LC A G+
Sbjct: 244 LEDAGADYALAERDGRHW-----LCAGGEALLPFDAMQLVGLHNAANALAALALCEAAGL 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +L  L     +  R E V T    G  ++D +  +N +      ++ +T    +V+
Sbjct: 299 PRAGLLAGLTTFKGLAHRVEHVLT--HEGVDFIDDSKGTN-VGATEAALKGMTRP--VVL 353

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              G  + Q   P+   +A     + ++  D P       +R  +       I+     E
Sbjct: 354 IAGGDGKGQDFSPLAPALARIGRAVLLIGRDAP------VVRQALAGLALPLIDCATLEE 407

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           A R   E+    DV++++     +  +      +  V     RE+ G+
Sbjct: 408 ATRRGFELAQPGDVVLLS-PACASFDMFRGYAHRAEVFIACARELAGV 454


>gi|227889755|ref|ZP_04007560.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849619|gb|EEJ59705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 460

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 110/350 (31%), Gaps = 34/350 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              + VTG++GK++     Q+I       +         I     +      S   L   
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMDHHLSKNGGHAYAVGNIGVPISEVVEKATSKDLLVVE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +S     GVT +                +  I   + N+   H+DYH+T   Y  AK+R+
Sbjct: 173 MSSFQLLGVTDIK-------------PKVAAIVDIYNNV---HLDYHKTFDNYVEAKLRI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   ++   I   D     E       A  +  S   +     +             +
Sbjct: 217 -TQSQDQDDYFIANFDQKNILEKELDKTKAKVQTFSETDKTADYFIGDEYLESKDDHHIM 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG     N LVA  +   +G D + +   L        R ++V T  
Sbjct: 276 KISD------IKIPGIHNQQNCLVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMT-Y 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +IY D   T+  +E     I +       V+   G DR      ++      +  I 
Sbjct: 329 NDRKIYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFMFDSLVPLFKKHVKSIV 384

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 385 LYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|330999324|ref|ZP_08323041.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Parasutterella excrementihominis YIT 11859]
 gi|329575182|gb|EGG56733.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Parasutterella excrementihominis YIT 11859]
          Length = 440

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 134/419 (31%), Gaps = 45/419 (10%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            + P+ +  GA+  ++ +A S  +       N  +      +         L G+H   +
Sbjct: 40  DYDPEQLDAGADLYIIGNAISRGNPLLEEILNRGLPYTSGPQWLQENI---LNGRH---V 93

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++  S +  I +  GL+   +     I    Q+   +           + L
Sbjct: 94  LAVAGTHGKTTTTSMLAWILEDCGLNPSFL-----IGGVPQNFGHS-----------ARL 137

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +      +  +         R   +  +       NL  DH D     +A       L  
Sbjct: 138 TESEYFVIEADEYDTAFFDKRSKFVHYRPRTVILNNLEYDHADIFPNLEAIERQFHHLV- 196

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P     I          V+K                 +  ++        +   +  
Sbjct: 197 RTIPSHGKVIFNEASEALHRVLKMGLWTPAESFGTSPVCDWRLVEH-------EGARLFA 249

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            GK+   F   LPGE  + NA  A    +  G+ +   ++ L +   V  R E  G  + 
Sbjct: 250 GGKEVGRFELSLPGEHNLLNASAAVAAAVNAGVSAERAVDALSRFEGVKRRMEVKGEVA- 308

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADI 412
           G ++  D+AH   ++E  +K +R+   +GR++ V          G        +L  AD 
Sbjct: 309 GTKVIDDFAHHPTAIEETIKAVRSKYQTGRLLAVLEPRSNTMKLGTMKAQLPGSLVQADK 368

Query: 413 AIVTDDNPRSEDPE---KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     + P       A +        E  +    +   +    + D ++V   G
Sbjct: 369 VFC------YQGPAVQWDTAAALAPLGEKAEEFKDLEALVEDVVSQAEQGDTILVMSNG 421


>gi|58584765|ref|YP_198338.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|75497798|sp|Q5GSC8|MURD_WOLTR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|58419081|gb|AAW71096.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 498

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 126/374 (33%), Gaps = 48/374 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST---------------ISSFAQD 159
           + I+ VTGT+GKS+  S +  I + +G      G                   ISSF  +
Sbjct: 112 QKIVGVTGTNGKSTTTSLIGHILKSAGKKVAIGGNLGVPILDLEKDAEIYVIEISSFQLE 171

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVS----VEASSHGLDQHRLDG-IKLIAGSFTNLGR 214
                             S      +                R+ G IK+      N+  
Sbjct: 172 LINMPAVIPVHDHTFFSGSQYRAAWMIKRVSEMTKKMTEVTKRMAGMIKVDISVLLNITL 231

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DHID H + + Y   K +L          A+I  D+  + ++  +       +  V    
Sbjct: 232 DHIDRHGSMENYIAVKSKLIGG----SKVAVIGCDNEITADIFNKFTGNKIPISGV---- 283

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
               L         Q++++ +E  +       +       N   +  +C  + +DS+ ++
Sbjct: 284 --RSLLDDKKGAEIQEISLKLENHNLSASDAKINLTSNAENIAASCAVCKLLKVDSSTII 341

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + ++    +  R E +G       ++V+ +  +N+ E   K I +  +   IV    G  
Sbjct: 342 DGIKSFSGLKHRNELLGKIEN--VLFVNDSKATNA-ESSKKAILSYKNIYWIV---GGRS 395

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           ++ G   +    A     + I        E  E + A  +     ++   N  +A R A 
Sbjct: 396 KEGGIESLSKHFARIRKALLI-------GESTE-VFASTMENKVDYVRCCNLEDAFRLAF 447

Query: 454 EML---NKQDVLVV 464
           E      ++  +++
Sbjct: 448 EEAIKSKEKTTILL 461


>gi|161504752|ref|YP_001571864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160866099|gb|ABX22722.1| hypothetical protein SARI_02875 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 438

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 146/400 (36%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L + S +  ++  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALANPSLSAAASAGVEIVGDIELF--------CREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALM--------------------LLDADRELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +    Q Y  AK+ ++E         ++
Sbjct: 158 ELSSFQLE--TTSSLQAVAATVLNVTEDHMDRYPFGLQQYRAAKLSVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            ADDA +  V      A  R +S G      HL +      + +  + V+G+    +   
Sbjct: 212 NADDALTMPV----RGADERCVSFGVNMGDYHLNR-----QQGETWLRVKGEKVLNVKEM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +      +   +  D   +     D      
Sbjct: 323 NVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSSLARYLTGDRIRLYCFGRD---GAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAE------QTETMEEAMRLLAPRVQSGDMVLL 410


>gi|329940944|ref|ZP_08290224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseoaurantiacus M045]
 gi|329300238|gb|EGG44136.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseoaurantiacus M045]
          Length = 489

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 140/404 (34%), Gaps = 45/404 (11%)

Query: 104 LFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             A RL G++       LAVTGT+GK++    +  I + +GL +  +G   T        
Sbjct: 111 EIAWRLRGRNGASAAPWLAVTGTNGKTTTTQMLASILRAAGLRTAAVGNIGT-------- 162

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    +   L+     G  +  +         H    +++ + +  NL  DH+D+H
Sbjct: 163 -------PIVDVVLAGADESGEPYDVLAVELSSYQLHWAPSLRVHSAAVLNLAPDHLDWH 215

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            + +AY   K R++E    + +     AD A    V +     GCR +            
Sbjct: 216 GSMEAYAADKGRVYEG--NRIACVYNMADKATEDLVREADVEEGCRAVGFTLGTPGPSQL 273

Query: 281 KVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            V       +  +    K+   L        P    + NAL AA L  A G+ +  V + 
Sbjct: 274 GVVDGLLVDRAFVEDRQKNAQELAEVSDVNPPAPHNIANALAAAALARAYGVPAKAVRDG 333

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L        R          G  Y+D +  +N+         ++ +   IV    G  + 
Sbjct: 334 LRAFTPDAHR--IAHVADVDGVAYIDDSKATNT----HATQASLAAYESIVWIAGGLAKG 387

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNR------IEA 448
                ++   A  L    ++  D         IR  +    P   +   +R        A
Sbjct: 388 ATFDELVAGAAGRLRGAVLIGADR------ALIREALARHAPEVPVVDLDRTDTGAMRAA 441

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +  A ++    D +++A     ++ + TN  K+     + +RE+
Sbjct: 442 VAEARKLARPGDTVLLA-PACASMDMFTNYNKRGDAFAEAVREL 484


>gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
 gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
          Length = 790

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 151/471 (32%), Gaps = 110/471 (23%)

Query: 25  WRERKINEVSSDSRHIQAGW--IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
             +  +  V +DSR+   G   +FVA+ G   D H FI + + +  +A +      L   
Sbjct: 18  GEDLPVARVLTDSRNCSFGEEPLFVAMKGTNHDSHAFIGEMVRRDVKAFLAERKTQL--- 74

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +    +VV +    L   A+    +    ++ +TG++GK+ V  ++ Q       
Sbjct: 75  ----PAGCGCVVVPSAIAALQQLAAHHRTRFKGRVVGITGSNGKTVVKEWIAQ------- 123

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA---SSHGLDQHRL 199
                     I +  +  R        L  ALS L  +G   +++     S  G      
Sbjct: 124 ---------QIPAGVKYFRSPKSYNSQLGVALSLLMIEGDEELALIEAGISCPGEMVRLE 174

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             I+     FT++G  H +   + +     K+     +L K +  IIY        +++R
Sbjct: 175 RMIRPDTVIFTSIGEAHQENFTSLEEKSAEKL-----VLAKGARTIIYHG---GSSLLER 226

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 R L  G Q +      +        +       D               A +  
Sbjct: 227 ----MIRTLYGGRQLQDAAEYPLPEQLPAGVLESGAGRVD---------------AQLVG 267

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMILKNIR 377
             C  +G           ++  V  R E        G + +D A+ S  NSL + L  + 
Sbjct: 268 AFCRVMGFPDPDFG----RIRPVAMRLEL--KEGINGSLLIDDAYNSDINSLSIALDYLH 321

Query: 378 TITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            + +G  + ++             + G++A  +A                        G+
Sbjct: 322 NMAAGRPMTLILSDIEQSGVEDGVLYGEVARLVA----------------------AAGV 359

Query: 437 PGFIEKGNRIEAIRTA-----------------IEMLNKQD----VLVVAG 466
              I  G+R   IR A                 +  L + D    V+++ G
Sbjct: 360 SRLIGVGDR---IRNAGANFACDSAFYRTTDELLRNLRRDDVAGRVVLIKG 407


>gi|115350565|ref|YP_772404.1| UDP-N-acetylmuramate [Burkholderia ambifaria AMMD]
 gi|172059596|ref|YP_001807248.1| UDP-N-acetylmuramate [Burkholderia ambifaria MC40-6]
 gi|115280553|gb|ABI86070.1| UDP-N-acetylmuramate [Burkholderia ambifaria AMMD]
 gi|171992113|gb|ACB63032.1| UDP-N-acetylmuramate [Burkholderia ambifaria MC40-6]
          Length = 461

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 114/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +        + V+ R       V   G  G +  L     +   ++  + 
Sbjct: 208 VRTVPGVGRLVTNGRSDALERVLAR--GCWSEVERFGVDGGWQALPAEDGVPVDERFAVY 265

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + +   +  + + G+    NAL A      +G+  A   E L     V  R E  G + 
Sbjct: 266 SQSERVGEVAWQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEVRG-SI 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGRQNSRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +     P   D     +   +           +    +++ +E     D ++V   G
Sbjct: 385 ADLVFGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARPGDHVLVMSNG 444


>gi|258645847|ref|ZP_05733316.1| tetrahydrofolate synthase [Dialister invisus DSM 15470]
 gi|260403220|gb|EEW96767.1| tetrahydrofolate synthase [Dialister invisus DSM 15470]
          Length = 440

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/392 (19%), Positives = 133/392 (33%), Gaps = 51/392 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--------SSFAQDNRLTTPSP 167
            ++ +TGT+GK SVA+ +  + + + L   +      I                    + 
Sbjct: 40  KMIHITGTNGKGSVAAMITSVLENTNLRVGRFTSPHLIDYTERIYLGGKDISREDFAKAA 99

Query: 168 IYLAKALSYLSSQGVTH---------------------VSVEASSHGLDQHRLDGIKLIA 206
             + KA   L + G                         +V     G      + +  + 
Sbjct: 100 TVVFKAHDELVAAGEEALTEFELLTAIAFWYFRENKADYAVMEVGMGGRFDATNVVMPVV 159

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              TN+  DH+ Y   T Q     K  + +E +P  + A   A     KE+ K AHN   
Sbjct: 160 SVITNVAMDHMQYLGNTLQEIAREKAGIIKEGIPVVTAAQHVA----LKELKKDAHNKKA 215

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG------KDFDFLFPLPGEFQVYNALVAA 319
           R+   G   +   +         Q V +  +G      K   F+  +     V  A+ A 
Sbjct: 216 RIYFYG---RDFEIDTRNKWEQGQVVVVKRKGMPKELEKSMLFVPFIGAHQAVNAAVAAM 272

Query: 320 GLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            L I +  D  +    L E L     +  F   ++ G  + +D AH     E + + +R 
Sbjct: 273 ALTILMKEDGRINENDLREGLARARWQGRFEIHHAGGKTVVLDGAHNEAGAEALQEALRE 332

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEI--IH 434
                R I VF    D+         ++ +   D         PR+  PE+I   I    
Sbjct: 333 QYPDKRRIFVFSSLQDKTTETII---QMLVRKGDKVYACAAPTPRTRTPEEICEMIDRQK 389

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   G+  +A+  A++  ++ D+++V G
Sbjct: 390 IRAEHKIAGSVADALEKAVKEADENDIVLVCG 421


>gi|108763559|ref|YP_633745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
 gi|118595667|sp|Q1D0S8|MURD_MYXXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|108467439|gb|ABF92624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
          Length = 455

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 127/397 (31%), Gaps = 45/397 (11%)

Query: 71  IVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS     +L +  A   +   +             A R+    P  +  +TGT+GKS+
Sbjct: 74  VVVSPGVPLALPEIQAARAAGVAVWGE-------VELAGRMLSGVP--LFGITGTNGKST 124

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             +    +   SG     +G    +     +  ++      L   LS    +G       
Sbjct: 125 TTALTGTLFA-SGDKRTFVG--GNLGRPFSEAAMSPGDWDALVVELSSYQLEG------- 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                     +  ++    +  NL  DHID + +  AY  AK R+F+         ++ A
Sbjct: 175 ----------IRTLRPRGAAILNLTPDHIDRYPSHAAYGEAKARIFQNQ-QAGDFVVVNA 223

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDA    + + A          G            A+       ++  G+ +        
Sbjct: 224 DDADVLGLARAAKAPVYGFSLTGKPVADAPALAGLAVVEPGGFRLAFLGEHYTLTNRALR 283

Query: 309 EFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                   +AA L   + G+ S  V   L+    +P R E V        +    A   +
Sbjct: 284 GAHNAQNAMAAALLARLGGVASGAVQAGLDGYPGLPHRLESVRVLDGVEWVNDSKATNVD 343

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S+   L  +R  + G  ++    G  +     P++      +  +  + DD         
Sbjct: 344 SV---LVALRAFSQGVWLI--AGGKGKGAPYAPMVEAGQGKVKGVLTIGDD-------AD 391

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A    G       G    A+  A E+  + D +++
Sbjct: 392 TLARAYAGAAQVHACGTLAHAVARARELAERGDTVLL 428


>gi|329901110|ref|ZP_08272726.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549209|gb|EGF33797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 501

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 139/374 (37%), Gaps = 53/374 (14%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             +L A R    +   ++A+TGT+GK++V S    +C+R+GLS    G    IS  A D 
Sbjct: 109 AQALAALREERGYAPKLIAITGTNGKTTVTSLTGLLCERAGLSVQVAG---NISPSALDV 165

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    L +A             +E SS  L  H    ++    +  N+ +DH+D+H
Sbjct: 166 LRQCLDSDSLPQA-----------WVLELSSFQL--HTTHSLQADVATVLNITQDHLDWH 212

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y   K R+F      ++  ++  DDA    VM+ A      V     +       
Sbjct: 213 GDMACYVADKARIF----GTDTIRVLNRDDA---AVMQLASTGTAPVTFGSDEALSPDCF 265

Query: 281 KVCAIHNKQQVTISVEGKDFDF---------------------LFPLPGEFQVYNALVAA 319
            +   +  Q + +++E +                            + G+    NAL A 
Sbjct: 266 GLLNENGMQWLAVAIEAEAEKKPTKRGPAEVRAVSSKRLMPADALKIRGQHNALNALAAL 325

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            LC AIG+  A +L  L   H  P R E V T + G   + D   T+    +       +
Sbjct: 326 ALCRAIGLPLAPLLHGLRDYHGEPHRVELVTTLA-GVTYFDDSKGTNVGATVAALTGLGL 384

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
                +V+   G  + Q   P+   +A  +  + ++       +D + IRA +   I   
Sbjct: 385 QQQGKLVLIAGGDGKGQDFTPLAAPVARHVRAVLLI------GKDADAIRAALAGHIGQV 438

Query: 440 --IEKGNRIEAIRT 451
             ++  +  +A+  
Sbjct: 439 ELLDCASLEQAVER 452


>gi|332523014|ref|ZP_08399266.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314278|gb|EGJ27263.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 444

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 99/344 (28%), Gaps = 49/344 (14%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              + ++ +  I  N P        +FL  F  +           V G  GK+S    + 
Sbjct: 73  REDNNEELAYAIAQNIPF---KRYHEFLGEFMKQFI------SFGVAGAHGKTSTTGLLA 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + +    +S+ IG  +   S      +             Y                  
Sbjct: 124 HVLKNITNTSYLIGDGTGRGSANAQYFVFESDEYERHFMPYY------------------ 165

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                          TN+  DH DY    +  F+A     + +   +    +Y +D   K
Sbjct: 166 ---------PEYSIITNIDFDHPDYFTGIEDVFSAFNDYAKHV---QKALFVYGEDEELK 213

Query: 255 EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQV 312
           ++   A      +   G++ K       +    N     +  + +    F  P  G   +
Sbjct: 214 KITSSAP-----IYYYGFEEKNDFIAFDIIRTTNGSDFKVKHDNQVIGQFHVPAYGRHNI 268

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA          G+D  LV +H+     V  RF     N     I  D+AH    +   
Sbjct: 269 LNATAVIANLYIAGVDMDLVAKHMVTFSGVKRRFTEKVIND--TIIIDDFAHHPTEIVAT 326

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   R    S  I+ +F                 AL+ AD   +
Sbjct: 327 IDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQALNEADSVYL 370


>gi|160873536|ref|YP_001552852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS195]
 gi|160859058|gb|ABX47592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS195]
 gi|315265766|gb|ADT92619.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS678]
          Length = 439

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 112/342 (32%), Gaps = 49/342 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +                      L  +      +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVPA--------------------LDLLHENADLFVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++        +  
Sbjct: 162 ELSSFQLE--TTHSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----SRAVLFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD  +               S G    +     +      H   ++    E        
Sbjct: 216 RDDKLT------VPPEPMNQNSFGLAAPEADEWGISDSKIYHGSSEIMPITE-------V 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N L A  L   +G+D  ++ +       +  R E VG  +    +    A 
Sbjct: 263 SLIGSHNHANLLAAMALVDVVGVDKQVMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              +    L  +        I++   G  +    +P+   +A
Sbjct: 323 NVGATVAALDGLSDHLG--DIILIAGGDGKGADFKPLGVALA 362


>gi|289677704|ref|ZP_06498594.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae FF5]
          Length = 172

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 8/171 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+  ++            F   LP    A++  DD   +E++   
Sbjct: 4   HLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILPLV 63

Query: 261 HNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318
                  L+ G+ +   I    V         T+    ++  D    +PG   V N+L  
Sbjct: 64  KRP---TLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLAT 120

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTS 366
             +    G+    +++ L     V  RF+    +  +     +  DY H  
Sbjct: 121 IAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDYGHHP 171


>gi|119512793|ref|ZP_01631862.1| Cyanophycin synthetase [Nodularia spumigena CCY9414]
 gi|119462565|gb|EAW43533.1| Cyanophycin synthetase [Nodularia spumigena CCY9414]
          Length = 876

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 116/357 (32%), Gaps = 28/357 (7%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     IG T+T  ++  +  + +        A   L    V    +E + 
Sbjct: 479 LLAHIYKQTGKV---IGYTTTDGTYIGEYLVESGDNTGPQSAHVILEDPTVEVAVLETAR 535

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 536 GGILRSGLGFEMANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAEAVFPDGYAVLNADD 595

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVEGKD 299
                + +R                            ++     +I            ++
Sbjct: 596 HRVAAMAERTKANIAYFTMNPDSELVRKHVQNGGVAAVYENGYLSIVKGDWTHRIERAEN 655

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRG 355
                     F + NAL A+       +    +   L+         PGR          
Sbjct: 656 IPLTMGGRAPFMIANALAASLAAFVQNVTIEQIRAGLKTFRASVSQTPGRMNLFNLGKYH 715

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +  DYAH   S E +   +R  T+G  I V G  GDR       +GK++ D+ D  IV
Sbjct: 716 ALV--DYAHNPASYEALGSFVRNWTTGERIGVVGGPGDRRDEDFVTLGKLSADIFDYIIV 773

Query: 416 -TDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             DD+ R          I  GI        +    +   AI  A++M     ++V+ 
Sbjct: 774 KEDDDTRGRSRGSAANLITQGITEVNPNCRYESILDETAAINKALDMAPDNSLVVIL 830


>gi|33239474|ref|NP_874416.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|44888179|sp|Q7VEJ1|MURC_PROMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33236999|gb|AAP99068.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 472

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 95/286 (33%), Gaps = 31/286 (10%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+  DH DY+    +  N   +  +      +             + K   +  
Sbjct: 184 DIGLLTNIELDHTDYYTNIDSLINTIKKFTKNCKKIVANYDCNN-------LRKACPDKT 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCI 323
               +  ++                  +    GK  D     LPG   + N L A   C 
Sbjct: 237 IWWSTNEFKNINFAAIPKIMNGQITLASYYENGKYIDDISISLPGVHNLNNTLGAIAACR 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR------ 377
           +  I+ + +  H+  L     RF+F G   +G +I  DYAH  + +   L   R      
Sbjct: 297 SADINFSDIKPHVSSLKCPERRFQFKGIW-KGRQIVDDYAHHPSEIRETLSMARLMINTK 355

Query: 378 ----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK-IRAEI 432
                + + RI+V+F                  L  AD+ I+T      E+P K I +E 
Sbjct: 356 KSILPMAADRIVVIFQPHRYSRTRDLITEFAKNLGAADLVILTPIYSAGEEPIKGITSEK 415

Query: 433 IH--------GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
           +          +P F  K  R   +   I +   + D+L+  G G 
Sbjct: 416 LKSCTLANNPNLPIFTCKQLRD--LENIINLKTRENDLLLFMGAGD 459


>gi|186685868|ref|YP_001869064.1| cyanophycin synthetase [Nostoc punctiforme PCC 73102]
 gi|186468320|gb|ACC84121.1| cyanophycin synthetase [Nostoc punctiforme PCC 73102]
          Length = 901

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 129/358 (36%), Gaps = 30/358 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  +          A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVEAGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+     +T +   N K  + E + P +  A++ AD
Sbjct: 560 GGILRSGLGFEAANVGVVLNVAADHLGIGDIETIEQLANLKSVVAEAVFP-DGYAVLNAD 618

Query: 250 DAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D     + ++   N     ++   +    H++K       +   +S+   D+        
Sbjct: 619 DHRVAAMSEKTKANIAYFTMNPDSELVRKHIQKGGVAAVYESGYLSIVKGDWTHRIERAE 678

Query: 309 E----------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
                      F + NAL A+       +    +   L+         PGR       + 
Sbjct: 679 NIPLTMGGRAPFMIANALAASLAAFVQNVTIEQIRSGLKTFRASVSQTPGRMNLFNLGNY 738

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH + S E +   +R  T+G+ I V G  GDR       +GK+A  + D  I
Sbjct: 739 HALV--DYAHNAASYEAVGSFVRNWTTGQRIGVIGGPGDRRDEDFVTLGKLAAQIFDYII 796

Query: 415 V-TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           V  DD+ R          II GI        +    +  +AI   ++M     ++V+ 
Sbjct: 797 VKEDDDTRGRLRGSAAQLIIQGITQVKPDSRYESILDETQAINKGLDMAPDNSLVVIL 854


>gi|187925394|ref|YP_001897036.1| UDP-N-acetylmuramate [Burkholderia phytofirmans PsJN]
 gi|187716588|gb|ACD17812.1| UDP-N-acetylmuramate [Burkholderia phytofirmans PsJN]
          Length = 464

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 117/360 (32%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 150 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLGAI-ETQFHHL 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +   + V+ R       V   G QG +  L     +   ++  + 
Sbjct: 209 IRTVPGIGRVVTNGREDALERVLTR--GCWSEVERFGVQGGWQTLPAEDGVPVDERFAVY 266

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   + + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 267 HNSARVGVVEWQVQGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVKRRMEVRG-SV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   +++  +  +R         I+              +  ++   LAD
Sbjct: 326 DGVTVYDDFAHHPTAIDTTVAGLRARVGRHNTRILAVLEPRSNTMKLGVMKAQLPASLAD 385

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
              +     P   D       E +  + G  +  + ++A ++  +      D ++V   G
Sbjct: 386 ADLVFGYGAPSGRDALGWNLGEALAPLGGKAQAFDNLDALVKAVVHAARPGDQILVMSNG 445


>gi|148549594|ref|YP_001269696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida F1]
 gi|148513652|gb|ABQ80512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           F1]
          Length = 450

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 120/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 87  ALQQAAARGVKLSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNL 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T +                      L +  +    +E SS  L+    D +     +  
Sbjct: 147 GTPA--------------------LDLLADDIELYVLELSSFQLE--TTDQLNAEVATVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +            + 
Sbjct: 185 NISEDHMDRYSGLPAYHLAKHRIFRG----ARQVVVNRQDALSRPLPVEGRPCW----TF 236

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 237 GLNSPDFKAFGLREVDGEKYLAFEFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFE 296

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L  L +   +  R ++V     G   Y D   T+    +             +V+   
Sbjct: 297 PMLAALREFGGLAHRCQWV-RERNGVNWYDDSKATNVGAALAAIEGLGADIEGKLVLIAG 355

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G  +      +   +      + ++        D E++   +   +P  +      +A++
Sbjct: 356 GDGKGAEFTALREPVKRFCRAVVLL------GRDAERLAEALGDAVP-LVRVKTLDDAVQ 408

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 409 QCAELAQAGDAVLL 422


>gi|309775628|ref|ZP_07670628.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916722|gb|EFP62462.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 434

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 19/265 (7%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+DY++  + Y NA    F   + K    +++ DDA  + +     + 
Sbjct: 163 PEYAIITNIELDHVDYYKDMEDYCNA-FETFANQIQKG--VVLFGDDAAVRLL-----HV 214

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
               L  G Q    +    +    N  Q  +    + F  F  P  G+  ++N+L    +
Sbjct: 215 KTPHLYYGLQDDNDVQAVHIQQNENGMQFDVLYHKELFGHFELPFVGKPLLWNSLGVIAV 274

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TIT 380
            I  G+ + L+ E L+    V  RF      +       DYAH   +++ +++  R    
Sbjct: 275 GIMEGLSAQLLQEGLQSFPGVKRRFTI--EENGDNVYIDDYAHHPTAVKYMIEAARIKYP 332

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI-RAEIIHGIP 437
             ++I +F                  LD AD   +    +N   E+   I   ++     
Sbjct: 333 GKKVIALFKPDRYSRIYYFMDRFAQELDQADEVYLCHFPENAAKEEGIDITIYDLADKCK 392

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVL 462
                     A   A  +  +   +
Sbjct: 393 KAEVINEDEAA---AKLLAQRGPAV 414


>gi|71064613|ref|YP_263340.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Psychrobacter arcticus 273-4]
 gi|71037598|gb|AAZ17906.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Psychrobacter arcticus 273-4]
          Length = 505

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/395 (13%), Positives = 110/395 (27%), Gaps = 49/395 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLA 171
              +++AV GT GK++  + +  I   +G+ +   IG    +++   + +       YL 
Sbjct: 101 QSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLG 160

Query: 172 KALSYL---SSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAY 226
                     + G   +  +         R   +  +       NL  DH D      A 
Sbjct: 161 TEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAI 220

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---------------- 270
                 +   +       +  A  +    + K       R   +                
Sbjct: 221 QTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLEN 280

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGLCIAIGI 327
                    +      +  Q T+S            + + G   V NALVA      IG+
Sbjct: 281 SQAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGV 340

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIV 386
                   L     +  R E +G +     ++ D+AH   ++   L    + +   R+  
Sbjct: 341 SVKTACAALSAFAGIKRRMELIG-DVNDILVFDDFAHHPTAITTTLDGAKKKLADRRLWA 399

Query: 387 VFGCG-GDRDQGKRPIMGKIALDLADIAIVTD------------DNPRSEDPEKIRAEII 433
           +          G        +  LAD  +  +            DN    +P     +++
Sbjct: 400 IIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIANPSIGSQQVL 459

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +            I+         D +V+   G
Sbjct: 460 SSVDDI---------IKHICTHAKAGDAIVIMSNG 485


>gi|330957972|gb|EGH58232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 448

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 119/350 (34%), Gaps = 38/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++ KS+V + V ++   +G      G   T +                    
Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAIAAGKRVAVGGNLGTPA-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F
Sbjct: 149 LDLLSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   DA S+ ++           + G      H   +   + ++ +   
Sbjct: 207 RG----ARQVVVNRQDALSRPLIGEGLPCW----TFGLNTPDFHGFGLREENGEKYLAFQ 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L  A+G+    +L  L +   +  R +++     
Sbjct: 259 FENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLREREG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    +    ++ +     G+++++   G  +      +   +A       +
Sbjct: 319 VHYYNDSKATNVGAALAAIEGLGADIDGKLVLI-AGGDGKGADFSGLRAPVAKHCRAAVL 377

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  D        ++ A+++      +       A+  + E+    D +++
Sbjct: 378 LGRD-------AELIAQVLGDAVPLVRVDTLQAAVGRSAELARSGDAVLL 420


>gi|269959054|ref|YP_003328843.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma centrale
           str. Israel]
 gi|269848885|gb|ACZ49529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma centrale
           str. Israel]
          Length = 456

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 109/354 (30%), Gaps = 52/354 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  ++ VTGT+GKS+    +  I   +G+ S   G      + +           
Sbjct: 105 FCRSQPARLIGVTGTNGKSTTVELIGWILNCAGIDSETGGNVGGKGALSLP--------- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      QG     +E SS+ L+   +    L  G   N+  DH+D +     Y +
Sbjct: 156 -----------QGKEAYVLELSSYQLEL--MHEASLDIGVVLNIAPDHLDVYSGMADYIS 202

Query: 229 AKMRL--FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           AK ++  F  LL          DD   + V         +V+    + +      V    
Sbjct: 203 AKEKILKFSNLLVA------NCDD---RNVTACLCKNVGQVMEFSCEKRLDKGVSVLDG- 252

Query: 287 NKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                 +   GK        +       N   A  +  ++G+   ++L  + +   +  R
Sbjct: 253 -----RVYFHGKVMGIGDLKIDSASNAENIAAAYTVARSLGVPDEVILASIREFPGLRHR 307

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + V   +    +    A  + S+   L   + +           G  +D G   ++G  
Sbjct: 308 NQIVAEIANVTFVNDSKATNAASVGKALMCRKNVYW------IAGGKSKDGGIESLLGLY 361

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           A  +    +V       E   +    +       +   +  +A+R A       
Sbjct: 362 ANHIRKAFLV------GEAANEFAVSLQRAQVEHVTCHDIYDAVRAAFVEAVAD 409


>gi|167035505|ref|YP_001670736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida GB-1]
 gi|166861993|gb|ABZ00401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           GB-1]
          Length = 450

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 122/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 87  ALQQAAARGVKLSGDIELFARHATAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNL 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T +                      L +  V    +E SS  L+    D +     +  
Sbjct: 147 GTPA--------------------LDLLADDVELYVLELSSFQLE--TTDQLNAEVATVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +            + 
Sbjct: 185 NISEDHMDRYSGLPAYHLAKHRIFRG----AKQVVVNRQDALSRPLPVEGRPCW----TF 236

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 237 GLNQPDFKAFGLREVDGEKYLAFEFQALMPARELKVRGAHNQSNALAALALGHAAGLPFE 296

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V     G   Y D   T+    +             +V+   
Sbjct: 297 PMLEALREFGGLAHRCQWV-RERNGVNWYDDSKATNVGAALAAIEGLGADIEGKLVLIAG 355

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G  +      +   +      + ++        D E++   +   +P  +   +  +A++
Sbjct: 356 GDGKGAEFTALREPVKRFCRAVVLL------GRDAERLADALGDDVP-LVRVKSLDDAVQ 408

Query: 451 TAIEMLNKQDVLVV 464
              ++    D +++
Sbjct: 409 QCAQLAQAGDAVLL 422


>gi|42518896|ref|NP_964826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii NCC 533]
 gi|62900556|sp|Q74JY5|MURD_LACJO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|41583182|gb|AAS08792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii NCC 533]
          Length = 460

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 110/350 (31%), Gaps = 34/350 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQR-SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              + VTG++GK++     Q+I       +         I     +      S   L   
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMDHNLSKNGGHAYAVGNIGVPISEVVEKATSKDLLVVE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +S     GVT +                +  I   + N+   H+DYH+T   Y  AK+R+
Sbjct: 173 MSSFQLLGVTDIK-------------PKVAAIVDIYNNV---HLDYHKTFDNYVEAKLRI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   ++   I   D     E       A  +  S   +     +             +
Sbjct: 217 -TQSQDQDDYFIANFDQKNILEKELDKTKAKVQTFSETDKTADYFIGDEYLESKDDHHIM 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG     N LVA  +   +G D + +   L        R ++V T  
Sbjct: 276 KISD------IKIPGIHNQQNCLVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMT-Y 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +IY D   T+  +E     I +       V+   G DR      ++      +  I 
Sbjct: 329 NDRKIYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFMFDSLVPLFKKHVKSIV 384

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 385 LYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|88809337|ref|ZP_01124845.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 7805]
 gi|88786556|gb|EAR17715.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 7805]
          Length = 483

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 135/420 (32%), Gaps = 59/420 (14%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +  +   S+ I  + P LV    ++      S   + L  + P   +A+ G+ GK++ +
Sbjct: 73  RSSPIVVISSAIPEHNPELVAARHQQLEVWHRSDLLAALIDQQPS--IAIAGSHGKTTTS 130

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V  +   +G       PT+ I            +            S G         
Sbjct: 131 TVVTTLLHGAGED-----PTAVIGGIVPCYGSNGHAGQGRLLVAEADESDGS-------- 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                   L   +   G  TNL  DH D+++             +         +   DD
Sbjct: 178 --------LVKFRASLGVITNLELDHTDHYRDLDDLIET----LQRFGNGCQRLLANQDD 225

Query: 251 AYSKEVMKR-AHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               E  +  A  +  R  +V + G  + L   +  A   +Q   +           P+P
Sbjct: 226 PILNEHFQADAWWSIQRSDNVDFAGLPVALEGDRTIADLYEQGTFV------GQITLPMP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + A   C   G+    ++ HL +L     RF++ G + +G +I  DYAH  +
Sbjct: 280 GLHNLSNTIGALAACRMEGVPLERLISHLSELKTPGRRFDYRG-DWQGRQIVDDYAHHPS 338

Query: 368 SLEMILKNIRTIT----------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +   L     +             R++ VF         +       AL  A++ ++  
Sbjct: 339 EVAATLDMANLMVSSGRSPLPRSPQRLVAVFQPHRYSRTQEFQHQFAEALLSAELVLLAP 398

Query: 418 DNPRSE-DPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E +   + +E +  +          +      E +    E     D+++  G G 
Sbjct: 399 IFSAGEAEIPGVNSEALASVMQELSTQQSVLVASTMDELVTLVKEHSLPDDLVLAMGAGD 458


>gi|227529010|ref|ZP_03959059.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227351022|gb|EEJ41313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 458

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 143/395 (36%), Gaps = 40/395 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           +    + +   +  I  + P++   V+     ++  A   +     ++++VTG++GK++ 
Sbjct: 68  LAEEDFDVVVKNPGIPYDNPLVAKFVEKKTPIITE-AELGWEIFEGHLVSVTGSNGKTTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  Q     +  ++ ++     I                L   LS     G        
Sbjct: 127 TTLTQ--LMIAKSNAHRVEYAGNIGVSFSKVAAELGPEDTLVTELSSFQLLGA------- 177

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       I+      TN+  +H+DYH+T++ Y NAK+ +       +   + +  
Sbjct: 178 ----------PIIRPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTSDDYLIMNWDR 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D + +     A  +   ++    Q K              +    ++ KD      L G 
Sbjct: 228 DEWQQ----IARRSQATIVPFSRQNKSHDGSYEEDGKIYWRGDYIMDAKD----IRLIGP 279

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL A       G+ +  +++ L     V  R ++V T+ +G R Y D    S  +
Sbjct: 280 QNVENALAAIAAAKLSGVTNQDIVDVLTSFSGVRHRLQYV-TDYQGRRFYNDSK--STDI 336

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E     ++       +++   G DR      ++      +  I +        +D  K  
Sbjct: 337 EATEVALQGFEQP--VILLAGGLDRGYTFERLVPYFKKHVKAIIVFGQ----CKDKMKDA 390

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AE   GIP  IE  N I A+  A ++ +  DV+++
Sbjct: 391 AE-QAGIPTIIESENAITAVPEAWKVSDPGDVILL 424


>gi|332978084|gb|EGK14822.1| tetrahydrofolate synthase [Desmospora sp. 8437]
          Length = 440

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 140/401 (34%), Gaps = 61/401 (15%)

Query: 112 KHPENILAVT---GTSGKSSVASFVQQICQRSGLSSF--------QIGPTSTISSFAQDN 160
            HPE  L      GT+GK S A+ V  + Q +G              G   T+       
Sbjct: 40  NHPERRLKFIHIAGTNGKGSTAAMVASVLQEAGYPVGMFSSPYLHHWGERITLDGEPIPE 99

Query: 161 RLTTPSPIYLAKALSYLSSQGV--------------------THVSVEASSHGLDQHRLD 200
           +        +A+ +  +  +GV                              GL   RLD
Sbjct: 100 KSFVHWAGQVAQLVEEMDREGVGRVTPFEFWTLVAILYFAKEAVPWFVVWETGLG-GRLD 158

Query: 201 G---IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
               +  +    TN+G DH      T       K  + +  +P         ++     +
Sbjct: 159 STNVVYPLVSVITNVGHDHTHILGETVTQIAGEKAGIIKPGVP---VVTACEEEEALSVL 215

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNA 315
              A    CR+  +    +   +         +  +     +  +    PL GE QV N 
Sbjct: 216 STVAEEKQCRLYRL---HREFDVVPRSGGEEGESFSFHNPFRPLERVRIPLRGEHQVKNG 272

Query: 316 LVAAGLCIAIG------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            VA      +       ++   VL  +E +    GR E V   S+  R+ +D AH     
Sbjct: 273 AVALMTLEILRKYYATVLEETDVLAGMENVRWP-GRLEQV---SQHPRVLLDGAHNPEGA 328

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKI 428
           E + + +R ++  R++++     D+D        K  L L D  +VT  D PR  +P ++
Sbjct: 329 EALARALRDLSCDRLLLLTAVLEDKDATGIL---KPLLPLVDRVMVTGVDQPRGLEPARL 385

Query: 429 RAEIIHGIPGFIEKGNRIEA---IRTAIEMLNKQDVLVVAG 466
           R E+   +   +E G    A   +R  +E   ++D +VVAG
Sbjct: 386 R-EVAARLRPDLEIGQATGADEGLRRLLEEAGERDCIVVAG 425


>gi|309809977|ref|ZP_07703825.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308169765|gb|EFO71810.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 460

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 126/392 (32%), Gaps = 50/392 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 I----CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      + G  ++ +G    I     +  L   +   L   +S     GV  +      
Sbjct: 134 IMENHLHKLGGHAYAVG---NIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK----- 185

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +  I   + N+   HIDYH+T + Y  AK+R+  +   K    I   D  
Sbjct: 186 --------PKVAAIVDIYNNV---HIDYHKTFENYVAAKLRI-TQNQDKSDYFIANFDQK 233

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              E       A     S        ++ +           + +          +PG   
Sbjct: 234 NILEQELSITKANVVTFSEESTQADYYIGEQYLESQADHEIMKISD------IKIPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N+LVA  +   +G     +   L        R ++V T +   RIY D   T+  +E 
Sbjct: 288 QQNSLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNN-RRIYNDSKSTN--IEA 344

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
               I + +     V+   G DR      ++  +   +  I +  +      D  +    
Sbjct: 345 ASVAIPSFSQPE--VLIAGGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAAR---- 398

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              GI   +      EA+  A ++ N  DVL+
Sbjct: 399 -KAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|299143662|ref|ZP_07036742.1| folylpolyglutamate synthase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518147|gb|EFI41886.1| folylpolyglutamate synthase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 421

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/401 (18%), Positives = 146/401 (36%), Gaps = 45/401 (11%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-------- 147
           DN +K L    S    ++   I+ V GT+GK SV S++Q     S L             
Sbjct: 23  DNVKKLLEELGSI---QNKIKIIHVAGTNGKGSVCSYIQNTLSGSNLKCGLFISPYIDDI 79

Query: 148 -------GPTSTISSFAQDNRLTTP--------------SPIYLAKALSYLSSQGVTHVS 186
                  G   +   F +   +  P                I++A A  Y     V    
Sbjct: 80  RETIQINGEYISEDDFVKCMEIIYPIVLKLDSEGYYVTSFEIFVAVAFLYFYKNKVDTAV 139

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAI 245
           +E    G           IA   T++  DHI+    T +     K  + ++ +P     I
Sbjct: 140 MEVGMGGRFDATNIFDAPIATVITSISLDHINILGKTLKEIAWQKGGIIKDNVP---VFI 196

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               +    E+++ A      V +         +K + +     + +     +  +    
Sbjct: 197 YPQKEEVMAELIRIAKEKNAPVHTFSLD----DVKDIFSTDKYNEFSFR---EHKNMRTS 249

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+ QVYNA +A      +     +  ++L K          +          +D +H 
Sbjct: 250 LLGKHQVYNASLAIMTLDYLKNFFPISDDNLRKSISSAKNIGRIEVIKENPTFVLDGSHN 309

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           + S++ +++N++T +  R+I+ F   GD+D     I+  +    + + + T DNPR+ + 
Sbjct: 310 AESIDALIENLKTFSYNRLILGFSVLGDKDIDY--ILKNLIPLASSVVLTTIDNPRAAEL 367

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E ++ E+           +R  A    + + N+ D+++  G
Sbjct: 368 EFLKREVSKYSNEVYAFEDRKIAFDKTVSLANEDDMILWCG 408


>gi|309806265|ref|ZP_07700278.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167249|gb|EFO69415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
          Length = 460

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 126/392 (32%), Gaps = 50/392 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKDANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 I----CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      + G  ++ +G    I     +  L   +   L   +S     GV  +      
Sbjct: 134 IMENHLHKLGGHAYAVG---NIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK----- 185

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +  I   + N+   HIDYH+T + Y  AK+R+  +   K    I   D  
Sbjct: 186 --------PKVAAIVDIYNNV---HIDYHKTFENYVAAKLRI-TQNQDKSDYFIANFDQK 233

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              E       A     S        ++ +           + +          +PG   
Sbjct: 234 NILEQELSITKANVVTFSEESTQADYYIGEQYLESQADHEIMKISD------IKIPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N+LVA  +   +G     +   L        R ++V T +   RIY D   T+  +E 
Sbjct: 288 QQNSLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNN-RRIYNDSKSTN--IEA 344

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
               I + +     V+   G DR      ++  +   +  I +  +      D  +    
Sbjct: 345 ASVAIPSFSQPE--VLIAGGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAAR---- 398

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              GI   +      EA+  A ++ N  DVL+
Sbjct: 399 -KAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|256371401|ref|YP_003109225.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007985|gb|ACU53552.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 526

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/391 (14%), Positives = 120/391 (30%), Gaps = 39/391 (9%)

Query: 93  LVVDNTRKFLSLFASRLYGKH-----------PENILAVTGTSGKSSVASFVQQICQRSG 141
           L+VD   +  +    RL G+               ++ +TG+ GK++   +V  + +   
Sbjct: 145 LLVDLALRITAPLERRLMGRFVDEATSRLRRVRPRVVGITGSFGKTTTKGYVAALVE--- 201

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                 G   T+++              + + L+      V    +     G     +  
Sbjct: 202 ------GTYRTLAT-PASFNNRGGLARAINEHLTSDVE--VFVAEMGMFGPGEIAELVSW 252

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T +G  H++   ++ A   AK+ + E         ++  D            
Sbjct: 253 VRPEISVITAIGPVHLERLGSEAAIVRAKLEIVE----TARVVVLNVDYPRLALAANALE 308

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G R +    +   I L+   A+    +  + V             +    N   A  +
Sbjct: 309 QEGARRV---VRVSAISLEADVAVKPNDEGEVVVYAHGAKIAKAALADVVAGNLACAVAV 365

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
            + +G+    + E L ++   P R     + + G  +  D Y          L  +    
Sbjct: 366 ALELGVAPEDIAERLGRIKPAPNRLVAGVSPTSGVEVLDDTYNANPMGARRALDALGARR 425

Query: 381 SGRIIV------VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEI 432
            G          +   G  +           A   + I +V   N R+ +   ++ R E 
Sbjct: 426 DGGGRRVVVTPGMIELGRRQYLENFKFAKAAAQVASHIIVVGRTNRRALEAGADEGRDEP 485

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              +       +R  A+    EML   DV++
Sbjct: 486 GSTLQELRWAPDREHAVALVREMLEPGDVVL 516


>gi|207092460|ref|ZP_03240247.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 467

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 142/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D      +   +     
Sbjct: 143 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDNKSEI----- 197

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 198 YIAEAG-------ARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLD 250

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++ V        +K + +        I +
Sbjct: 251 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDVS-----SLVKNIQSTLKGTSFEIFI 298

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + GEF  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 299 DSVWERFETKILGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 357

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 358 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDGVFDVA 414

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 415 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 460


>gi|210608677|ref|ZP_03287954.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
 gi|210152934|gb|EEA83940.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
          Length = 450

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 99/291 (34%), Gaps = 19/291 (6%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L  +  +    E SS  L+   +   +    +  N+  DH++ H T +AY  AK    
Sbjct: 151 AALEMREDSVAVAEMSSFQLE--TIHEFRPKVSAILNITPDHLNRHHTMEAYIKAK-EDI 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   KE   ++  +D  ++++ +          S     + I+L     I  + +  + 
Sbjct: 208 AKNQTKEDTCVLNYEDEVTRKIGENVKANVLYFSSQRKLDRGIYLDDGNIILRQDEEILV 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +      L G     N + A  +  A G    ++   +++   V  R EFV     
Sbjct: 268 CNVNE----LKLLGTHNYENVMAAVAMAAAYGTPMEVIRRTIKEFAGVEHRIEFVREKDG 323

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                       ++    ++ +   T     V+ G G D+D      +      +  + +
Sbjct: 324 VAYYNDSKGTNPDAAIKGIQAMNRPT-----VLIGGGYDKDSEYEEWIQAFDGKVKLLVL 378

Query: 415 VTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V          EKI       G   ++   +  EA+   IE     D +++
Sbjct: 379 V------GATKEKIAEAAERVGFVSYVMADSFEEAVEKCIEAAEPGDAVLL 423


>gi|300813520|ref|ZP_07093855.1| Mur ligase middle domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512366|gb|EFK39531.1| Mur ligase middle domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 286

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + ++HV +E SS      R++ I     SF NL R+HID H + + YF  K ++   
Sbjct: 1   MLDKNISHVVMEVSSSAQQMLRVNNIDFDIVSFGNLSREHIDQHGSFENYFRDKSKIILN 60

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV----- 291
              K S A++  D+ +   + ++   +            F   K   +    + +     
Sbjct: 61  -AKKGSFALLNMDNEHIASLKEKTKASVLTFSMENLDSDFGISKLDLSTGFGKFMFHVNR 119

Query: 292 ---TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               I+++ + F+      G   V N ++A  L + + +D  ++L  L+    V  RFE 
Sbjct: 120 DIKEINLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALKNFKGVERRFEL 179

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           +       ++  D+     ++++ +  +  ++   + +++   G+R 
Sbjct: 180 IYDEK--FKVLDDHFANEKNIDVTMTTLSQMSYKNLHILYAIRGNRG 224


>gi|308177861|ref|YP_003917267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
 gi|307745324|emb|CBT76296.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
          Length = 509

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 135/422 (31%), Gaps = 61/422 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ ++VS  ++ ++       +  I +  +    L+       G      L +TGT+GK+
Sbjct: 91  AQLVMVSPGWNPRNPVIAEAESKGIAIWSDIE--LAWRVQNRAGHTAPQWLVITGTNGKT 148

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +     + I +  GL +  +G   T                     +     + V +   
Sbjct: 149 TTVGMTESILRADGLKAIAVGNVGT--------------------PILDAVREPVDYDVF 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                    H    I  +A    NL  DH+D+H   + Y  AK +++E     +  AI  
Sbjct: 189 AVELSSFQLHYTHTISPVASVVLNLAEDHVDWHDGFENYKAAKAKIYER---TQIAAIFN 245

Query: 248 ADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS------VEGKDF 300
           A D  + ++++ A     CR +        + +  V       +  +       VE    
Sbjct: 246 AADEATIKMVEDADVVEGCRAIGFTTDTPAVSMVGVVEGLLVDRAFLEERKTSAVELIAL 305

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             +  +       NA  AA L  A G+    V   L+       R + V        +  
Sbjct: 306 KEIGEIVPRHTAANAAAAAALTRAYGVHPEAVAAGLKNFDSGDHRIQAVARKDDILWVND 365

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   ++ +  L           +V    G  +      ++ K A  LA + ++  D  
Sbjct: 366 SKATNPHAADASLAAF------TRVVWIAGGLSKGVEYGDLVAKHAQRLAKVLLIGTDT- 418

Query: 421 RSEDPEKIRAEIIHGIP--GFIEKGNRIE---------------AIRTAIEMLNKQDVLV 463
                  +R  +    P    I+  +  +               A+  A E+    D ++
Sbjct: 419 -----AGLREALAAHAPEVEVIDITDSAQDSEGAAPSGAQVMTRAVSKAAEIAQAGDTVL 473

Query: 464 VA 465
           +A
Sbjct: 474 MA 475


>gi|295692688|ref|YP_003601298.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Lactobacillus
           crispatus ST1]
 gi|295030794|emb|CBL50273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus ST1]
          Length = 459

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 112/350 (32%), Gaps = 35/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              + VTG++GK++     Q+I       S+        I     +          L   
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSAHHAYAVGNIGVPISEVVPKATKDDILVVE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +S     GVT +                +  I   + N+   H+DYH+T + Y NAK+  
Sbjct: 173 ISSFQLLGVTDID-------------PKVAAIVDIYNNV---HLDYHKTFENYVNAKLN- 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                      I   D        K    A  +  S         +         +++  
Sbjct: 216 VTRTQNSNDYFIANYDQKDILAKEKEVSPAKMQTFSETDHNADYFIGDEYLESQNEKIMK 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +         LPG   + N+LVA  +   +G D+  +   L        R ++V T  
Sbjct: 276 ISD-------IKLPGIHNLQNSLVAIAISKIMGADNDDIAAVLSTFTGAKHRLQYVTT-L 327

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G ++Y D   T+  +E     I +       V+   G DR      ++      +  I 
Sbjct: 328 DGCKVYNDSKSTN--IEAATVAIPSFKQPE--VLIAGGLDRGFTFDDLVPLFKKHVKSIV 383

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +      D  +       GI   +      EA+  A E++   DVL+
Sbjct: 384 LYGETRYLLADAAR-----KAGIKDIVIVNTLQEAVPRAWELVEPGDVLL 428


>gi|27381715|ref|NP_773244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium japonicum USDA 110]
 gi|62900585|sp|Q89FU5|MURD_BRAJA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27354884|dbj|BAC51869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium
           japonicum USDA 110]
          Length = 466

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 151/447 (33%), Gaps = 65/447 (14%)

Query: 66  QGAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            G  A+V++    L      +S        + V+ +   F      R         +A+T
Sbjct: 64  AGFAALVLAPGVPLTHPVPHWSVLKAREAGVEVIGDIELFCRE---RRRHAPDAPFVAIT 120

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  + +  + + +G  +   G   T                     LS    + 
Sbjct: 121 GTNGKSTTTALIAHLTKVAGYDTQMGGNIGT-------------------AILSLEPPRT 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +E SS+ +D      +    G   N+  DHID H T   Y   K RL    +   
Sbjct: 162 GRVHVIEMSSYQIDL--TPSLDPSVGILLNVSEDHIDRHGTIAHYAAVKERLVAG-VQAG 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             +I+  DD Y +++  R   AG  V+ +  +           IH +    +   G    
Sbjct: 219 GTSIVGVDDGYCRDIADRLDRAGKNVVRISVKNPL-----ASGIHVEHGTIVRTAGGARS 273

Query: 302 FLFPLPG------EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +  L G           NA  AA   +A+GI   ++ + L     +  R E VG   RG
Sbjct: 274 EVAKLGGIGSLRGLHNAQNAACAAAAALAMGISQDVLQDGLRSFPGLAHRMEQVG--RRG 331

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             ++V+ +  +N+ +     + +      I     G  +  G   + G          I 
Sbjct: 332 NVLFVNDSKGTNA-DATAHALSSFADIFWIA---GGKPKAGGITSLTGFFPRIRKAYLI- 386

Query: 416 TDDNPRSEDPEK----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKG 468
                  E  ++    +  ++ H I   ++      A+  A          D +V+    
Sbjct: 387 ------GEAAQEFSGTLGTQVAHEISQTLDV-----AVEHAARDAEASGLTDAVVLLSPA 435

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495
             +     N E + +   ++++ + G+
Sbjct: 436 CASFDQYRNFEIRGTKFRELVQALPGV 462


>gi|320161741|ref|YP_004174966.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
 gi|319995595|dbj|BAJ64366.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
          Length = 461

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 133/445 (29%), Gaps = 85/445 (19%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI  A     GA  +V SSA    +          I V+    +FL  F  +        
Sbjct: 50  FIGHAAGNISGATMVVRSSAIPEDNPEVQAARQAGIPVLKRA-EFLETFLKKY------R 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AV GT GK++    +  +      +   I     I                + + L  
Sbjct: 103 VIAVAGTHGKTTTTGMIAWMLSSLAQNPSYI-----IGG--------------VVRDLHT 143

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +  G + + V  +          G+       T L  DH D   T   Y  A    F  
Sbjct: 144 NAHAGKSDLFVIEADEYDRMFL--GLHPHIAVITYLEHDHPDCFPTMADYSGA-FEDFIR 200

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY------------------------ 272
            +      ++  D   ++ +  +A   G +V++ G                         
Sbjct: 201 QIQAGGILLVNGDHPPTRAL-GQATPKGVKVMTYGESEHNTYFLKHASVNRWGGFSADVW 259

Query: 273 ----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                G+   L                          +PG+  + NAL A  +   +G+ 
Sbjct: 260 KQMPDGENRRL--------------------LHLALQVPGKHNLLNALAALAVADQLGLM 299

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
            +   E L   H    RFE  G  + G  +  DYAH    +   L   R       I  V
Sbjct: 300 LSPAAEALHLFHGTGRRFEVRG-EANGVTLIDDYAHHPTEIRTTLAAARARYPERHIWAV 358

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIRAEIIHGI--PGFIEKGN 444
           +                 + + AD  +V +     E +P     E+++ +  P  + +  
Sbjct: 359 WQPHTYSRTQALMEEFCQSFEDADAVVVLEIYAAREKNPGFSAREVVNRMKHPAAVFQPT 418

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGH 469
              A    +  L   DV++V   G 
Sbjct: 419 LETAQEYLLNCLQPGDVVLVLSAGD 443


>gi|91787310|ref|YP_548262.1| cyanophycin synthetase [Polaromonas sp. JS666]
 gi|91696535|gb|ABE43364.1| Cyanophycin synthetase [Polaromonas sp. JS666]
          Length = 872

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 44/368 (11%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +    GL +   G T+T   +    +  +        A + L    V     E + 
Sbjct: 490 LIAHLMTAHGLRT---GMTNTDGVWINGRQTDSGDCSGPKSARNVLMHPDVDAAVFEIAR 546

Query: 192 HGLDQHRLDGIKLIAGSFTNLGR-DHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            G+ +  L   +      TN+G  DH+   Y  T +     K  + + + P    A++ A
Sbjct: 547 GGVLREGLGFDRCEVAVVTNIGSGDHLGLNYITTVEDLAVLKRVIVQNVAPT-GYAVLNA 605

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFL 303
            D     V + A     +V+         H   +     + + T+ V+G      +  ++
Sbjct: 606 ADP---IVAEMAATCPGKVIYF---AADRHHPLMATHRAQGKRTVYVDGPVLVAAEGAWV 659

Query: 304 FPLPGE-----------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVG 350
             +P             FQV NA+ A     A G++   +   L             F  
Sbjct: 660 ERIPLAGIPVTRGGSIGFQVENAMAAVAAAWAAGLNWDTIKSGLASFVNDAHNAPGRFNV 719

Query: 351 TNSRGGRIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            + RG  +  DY H  +++      +  +      R  VV    GDR          I  
Sbjct: 720 MDYRGATVIADYGHNPDAMRALVAAVDAMAAAAGQRRSVVISGAGDRRDSDIRDQTVILG 779

Query: 408 DLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGF--IEKGNRIE-------AIRTAIEMLN 457
              D  I+  D   R     ++   +  G+ G     + +RI+       AI TA+  L 
Sbjct: 780 AAFDDVILYQDAAQRGRADGEVMGLLREGLEGLNKASRTSRIDEIRGEFLAIDTALGRLQ 839

Query: 458 KQDVLVVA 465
             D+ +V 
Sbjct: 840 PGDLCLVL 847


>gi|325523967|gb|EGD02169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. TJI49]
          Length = 461

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 114/365 (31%), Gaps = 38/365 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +          V+ R       V   G  G +  L     +   +   + 
Sbjct: 208 VRTVPGIGRIVTNGRADALDRVLAR--GCWSEVERFGVDGGWQALPAEDGVPVDECFAVY 265

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+   +  + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 266 SLGQRVGEVAWQVQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 325 NGVTVYDDFAHHPTAIETTIAGLRARIGRQNTRILAVLEPRSNTMKLGVMKSQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLV 463
              +     P   D     A   +        G++ +A       ++  +E     D ++
Sbjct: 385 ADLVFGYGAPSGRD-----ALGWNLGEALAPLGDKAQAFGDLHLLVKAVVEAARPGDQVL 439

Query: 464 VAGKG 468
           V   G
Sbjct: 440 VMSNG 444


>gi|293376913|ref|ZP_06623130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292644459|gb|EFF62552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 459

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 112/355 (31%), Gaps = 26/355 (7%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VV              S   ++ V +       F           ++AVTGTSGK++ 
Sbjct: 63  AVVVDREVK----ELKKISGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVAVTGTSGKTTT 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ I               T+       R    +P  L   L    S          
Sbjct: 119 KDMIKHILST------WYKVEGTV-------RSANGNPRNLIYLLRIDDSIQAAVYESAV 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            + G   +         G  TN+G DH++  +T Q Y NAK  +   ++P+    I+ AD
Sbjct: 166 GAPGDITYTCSHFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVS-VIPEGGTLILNAD 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D   K +          ++  G           +   +N    T+++    +    P  G
Sbjct: 225 DEKIKTI--DTSKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           + QVYNAL        +GI      + L    ++    E     ++   I   +   + S
Sbjct: 283 KHQVYNALADLAATHEMGIGITQAAQALSSFKLLMNHCEIKKGLNQATIIDDTWNINTAS 342

Query: 369 LEMILKNIRTITSGRIIVVFGC-----GGDRDQGKRPIMGKIALDLADIAIVTDD 418
           L+  +  +  +      V         G       + +   IA    D  I   D
Sbjct: 343 LKAAMNTLCELNQQHKKVALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGD 397


>gi|26988069|ref|NP_743494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida KT2440]
 gi|38258004|sp|Q88N78|MURD_PSEPK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24982793|gb|AAN66958.1|AE016324_8 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           KT2440]
          Length = 450

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 121/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 87  ALQQAAARGVKLSGDIELFARHAKAPIVAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNL 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T +                      L +  +    +E SS  L+    D +     +  
Sbjct: 147 GTPA--------------------LDLLADDIELYVLELSSFQLE--TTDQLNAEVATVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +            + 
Sbjct: 185 NISEDHMDRYSGLPAYHLAKHRIFRG----ARQVVVNRQDALSRPLPVEGRPCW----TF 236

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 237 GLNPPDFKAFGLREVDGEKYLAFEFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFE 296

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V     G   Y D   T+    +             +V+   
Sbjct: 297 PMLEALREFGGLAHRCQWV-RERNGVNWYDDSKATNVGAALAAIEGLGADIEGKLVLIAG 355

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G  +      +   +      + ++        D E++   +   +P  +      +A++
Sbjct: 356 GDGKGAEFTALREPVKRFCRAVVLL------GRDAERLAEALGDAVP-LVRVKTLDDAVQ 408

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 409 QCAELAQAGDAVLL 422


>gi|305432184|ref|ZP_07401348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter coli JV20]
 gi|304444727|gb|EFM37376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter coli JV20]
          Length = 475

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 120/365 (32%), Gaps = 53/365 (14%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           ++L       I+ +T + GK+S+ +F+ ++ +    +       +T+     D       
Sbjct: 147 AKLQNNPQLKIILITASFGKTSIKNFLYELLKDDFKTYKTPRSVNTLLGIIADINTNLSD 206

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              +     Y++  G                    ++        +G  H++Y +  +  
Sbjct: 207 DTQI-----YIAEAGARVKGDIDVI-------TRFLEPQICIVGEIGNAHLEYFKNIENT 254

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKK 281
              K+                          KR   A     +   + +        L+ 
Sbjct: 255 RKTKLEALNS---------------------KRLEKAFLHTSTQKSEDELILLYDDKLQD 293

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + A     +  I++E K ++F   + G+F   N          +G+    + + + K++ 
Sbjct: 294 IQASLQGLEFKINLENKTYEFKSQILGDFNAQNLCACILCANYLGVKIEKIQKQVLKINS 353

Query: 342 VPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           V  R + +    +   I  D +      +    K  +    GR ++V     + D+ +  
Sbjct: 354 VEHRLQIISKEPKF--IIDDGFNGNYKGMSASYKLCKNY-KGRKVLVSPGIVEVDKDENV 410

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLNK 458
            + KI  +  D+A++T          ++ A+I            + +A  ++   +   +
Sbjct: 411 KLAKIINECFDLAVIT---------AQVNADIFKKELKIKTIILKEKADLVKVLAKETQQ 461

Query: 459 QDVLV 463
            D+++
Sbjct: 462 GDLIL 466


>gi|313500439|gb|ADR61805.1| MurD [Pseudomonas putida BIRD-1]
          Length = 446

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 121/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 83  ALQQAAARGVKLSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNL 142

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T +                      L +  +    +E SS  L+    D +     +  
Sbjct: 143 GTPA--------------------LDLLADDIELYVLELSSFQLE--TTDQLNAEVATVL 180

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +            + 
Sbjct: 181 NISEDHMDRYSGLPAYHLAKHRIFRG----ARQVVVNRQDALSRPLPVEGRPCW----TF 232

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 233 GLNPPDFKAFGLREVDGEKYLAFEFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V     G   Y D   T+    +             +V+   
Sbjct: 293 PMLEALREFGGLAHRCQWV-RERNGVNWYDDSKATNVGAALAAIEGLGADIEGKLVLIAG 351

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G  +      +   +      + ++        D E++   +   +P  +      +A++
Sbjct: 352 GDGKGAEFTALREPVKRFCRAVVLL------GRDAERLAEALGDAVP-LVRVKTLDDAVQ 404

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 405 QCAELAQAGDAVLL 418


>gi|302342207|ref|YP_003806736.1| Mur ligase middle domain protein [Desulfarculus baarsii DSM 2075]
 gi|301638820|gb|ADK84142.1| Mur ligase middle domain protein [Desulfarculus baarsii DSM 2075]
          Length = 483

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 115/392 (29%), Gaps = 51/392 (13%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
                A          ++A  GT GK++  +        +G +   +     +     + 
Sbjct: 105 LPQALAELFIADKTAIVIA--GTHGKTTTTALTASGLLHAGAAPGFL-----VGGVMIEG 157

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                         ++   +G  + +          H     +   G  T++  DH D +
Sbjct: 158 GRNFADGRG-----AHFVVEGDEYDTAFFDKRPKFVHY----RPKIGVLTSVEFDHADIY 208

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIH 278
               A   A    F  L+P E   I + DD    EV+ RA  A C V + G   +  +  
Sbjct: 209 ADLDAVRVA-FDQFAALIPPEGVLIAWGDDP---EVLARAQKARCPVQTYGQGPQCLWRL 264

Query: 279 LKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           L    +      + +   G    +F  PL G     NA  A     A G+  A       
Sbjct: 265 LAARPSPQGGALIELQPPGGPAVEFYSPLAGRHNALNACAAVAAMTAGGVALAEACRVQG 324

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGC 390
               V  R E V   + G  +  D+AH   ++   +  +            GR+I VF  
Sbjct: 325 LFQGVRRRQE-VRDRAGGVTVVDDFAHHPTAVRETIAAVADFGLPGWRPGDGRLIAVFEP 383

Query: 391 GGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
             +  +          A D AD+ ++       E P     E            +  E  
Sbjct: 384 RTNTSKTNHFQAEYATAFDRADLVLL------REPPGAEAIEASRRFSSTRLAQDLAERG 437

Query: 450 RTAIEML-------------NKQDVLVVAGKG 468
             A  +                 D+ ++   G
Sbjct: 438 LQARALANGDGLLAELLAELRPGDLCLIMSNG 469


>gi|317402636|gb|EFV83195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Achromobacter xylosoxidans C54]
          Length = 456

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 97/308 (31%), Gaps = 28/308 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++ +S +  I + +GL+   +                      L  
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILEAAGLAPNFL---------------IGGVAPDLHV 145

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           +  Y  ++    +  +         R   +  +       NL  DH D      A    +
Sbjct: 146 SARYDPARRPFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAI-ETQ 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                  +P     I  A       V+  A       ++ G  G +       A      
Sbjct: 205 FHHLVRTIPASGRIIRPAHSDALDRVI--ARGCWSETVTFGADGAWQA----DAPDADGA 258

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   G       + L GE    NAL A       G+ +A  +  L +   V  R E  
Sbjct: 259 FEVRCNGAAVGTVRWALGGEHNRMNALAALAAAEHAGVPAAEGVAALSRFGGVKRRMELR 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--AL 407
           GT   G ++Y D+AH   ++   ++ +R       I+              +  ++  +L
Sbjct: 319 GT-VNGVKVYDDFAHHPTAIATTVQGLRRQVGPARILAVLEPRSNTMKLGAMAARLPDSL 377

Query: 408 DLADIAIV 415
             AD+   
Sbjct: 378 RDADLVFC 385


>gi|302188879|ref|ZP_07265552.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. syringae 642]
          Length = 449

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 131/410 (31%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGETPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALARVIEM--GCWTPVQTTGQNGQW---QAQLLSEDGSRFEVLFEGEPQGTVDWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  +L ++ L     V  R E V  + RG  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPSLGVQALSAFKSVKRRMEKV-ADVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R       I+            G      + ++  AD  +      +  D 
Sbjct: 336 AIATTLDGLRKKVGDASIIAVIEPRSNSMKLGAHRDGLRESVSQADQVVWYAPPNLGWD- 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     A  + G     +  + IEA I            +V+   G
Sbjct: 395 ---------LAATVAGGTVPAQVCDSIEAIIDQVKSQAQPGTHIVIMSNG 435


>gi|300361456|ref|ZP_07057633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
 gi|300354075|gb|EFJ69946.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
          Length = 460

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 110/350 (31%), Gaps = 34/350 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              + VTG++GK++     Q+I       +         I     +      +   L   
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMDHHLSKNGGHAYAVGNIGVPISEVVEKATNKDLLVVE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +S     GVT +                +  I   + N+   H+DYH+T   Y  AK+R+
Sbjct: 173 MSSFQLLGVTDIK-------------PKVAAIVDIYNNV---HLDYHKTFDNYVEAKLRI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   +    I   D     +   +   A  +  S   +     +             +
Sbjct: 217 -TQSQDQNDYFIANFDQKNILDRELKKTKAKVQTFSETDKTADYFIGDEYLESKDDHQIM 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG     N LVA  +   +G D + +   L        R ++V T  
Sbjct: 276 KISD------IKIPGIHNQQNCLVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMT-Y 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +IY D   T+  +E     I +       V+   G DR      ++      +  I 
Sbjct: 329 NDRKIYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFMFDSLVPLFKKHVKSIV 384

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 385 LYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|188527417|ref|YP_001910104.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
 gi|188143657|gb|ACD48074.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
          Length = 470

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 139/353 (39%), Gaps = 38/353 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S+  F+ QI Q +  +       +T+   A D          +     
Sbjct: 146 KVIAITGSFGKTSIKKFLLQILQTTFNTHASPKSVNTLLGLANDINQNLDDRSDI----- 200

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 201 YIAEAG-------ARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 253

Query: 236 E-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L K     +   + Y+ +           ++          +K + +        + 
Sbjct: 254 SKRLEKAFCYSVEKINPYAPK--------DSPLIDYS-----SLVKNIQSTLKGTSFEML 300

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +      F   + G+F  YN   A  +   +G+++  +   + +L+ +  R + +  N +
Sbjct: 301 IGSVWESFETKVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +   ++ D+
Sbjct: 361 ---IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNETLAQKIDEVFDV 416

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AI+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 417 AIITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 463


>gi|110803060|ref|YP_699195.1| FolC bifunctional protein [Clostridium perfringens SM101]
 gi|110683561|gb|ABG86931.1| FolC bifunctional protein [Clostridium perfringens SM101]
          Length = 441

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 140/386 (36%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +G                   I+    +        
Sbjct: 41  KFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENINKDDLAILM 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLDG---IKLIA 206
             + KA+  +   G    +       L  +                  RLD    I    
Sbjct: 101 GDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGGRLDATNVILPEI 160

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    T +     K  + +  +P     I Y  +  + EV+K   N   
Sbjct: 161 VVLTSISLDHMNILGNTIEEIAKEKCGIIKGGVP----VISYPQEEKALEVIKERCNELG 216

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L V Y  K I    +    + Q++ +S+E +       L G+ QV N L+A    I +
Sbjct: 217 CNLEVVYT-KDIRNIIIDKEKHVQKIEVSLEDEILKIDLCLLGDHQVKNFLLALKTLIKL 275

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                 I +  + E  +K+  + GR E +  N     + +D AH  + +  +  +I    
Sbjct: 276 RNNGVNISNEAIKEGFKKVRWI-GRMEVLNEN---PLVVIDGAHNIDGIRSLRNSIDKYF 331

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + I +   G   D+    ++ +I   +  + IV   + R+ED E +  ++   +    
Sbjct: 332 NFKNITLIL-GVLGDKQVDEMVEEITRGVDRVVIVEPHSDRAEDIEDLYIKVKKYVKEVF 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  EA   A  + N  D+L++ G
Sbjct: 391 KFKDYKEAYNKAYSLTNDDDLLLICG 416


>gi|78211584|ref|YP_380363.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9605]
 gi|109892751|sp|Q3ANM4|MURC_SYNSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78196043|gb|ABB33808.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. CC9605]
          Length = 469

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 89/286 (31%), Gaps = 28/286 (9%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G  TNL  DH D++       +      +         +   D      +++    
Sbjct: 183 SPSLGVITNLELDHTDHYSCLDDLIST----LQRFAGGCDRVLANHDCP----ILQEHFQ 234

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
                 +   +        +    ++        G+   DF  P+ G   + NA  A   
Sbjct: 235 PTAWWSNQSDESVDFAALPLSLDGDRCVARFYEAGQPVGDFTLPMAGLHNLSNATGALAA 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379
           C   G+    ++E L  L     RF+  GT  +G  I  DYAH  + ++  L+  R +  
Sbjct: 295 CRMEGLPFNQLVEGLAGLKAPGRRFDLRGTW-KGRHIVDDYAHHPSEVQATLEMARLMVR 353

Query: 380 --------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                      R++ VF         +       AL   D+ ++    P  E P +  + 
Sbjct: 354 SGRSPLPSAPQRLLAVFQPHRYSRTRQFLDGFAKALQNCDLLLLAPVYPAGEQPLQGISS 413

Query: 432 IIHGIPGFIEKGNRIEAIRT--------AIEMLNKQDVLVVAGKGH 469
                     K +   A+           I+   + D+++  G G 
Sbjct: 414 NALADRVRKLKPDLEIAVAENLDQLTELVIQHSLENDLVLAMGAGD 459


>gi|269468117|gb|EEZ79827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured SUP05
           cluster bacterium]
          Length = 434

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 146/409 (35%), Gaps = 61/409 (14%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
             QA+    + + +S   +          +  I VV +      LF+  +       ++ 
Sbjct: 54  WKQALLADVDEVFISPGIAQTQSIVIWARDKNIPVVSDIE----LFSRFVK----APVIG 105

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GKS+V   +  +   S       G                        AL  L  
Sbjct: 106 ITGSNGKSTVTQLLGDMITNSDKKVAVGGNIG-------------------KPALDCLDD 146

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q + +  +E SS+ LD    + +KL+ G   N+  DH+D + +   Y ++K+ L+     
Sbjct: 147 Q-IDYYVLELSSYQLD--YTNQLKLLTGVVLNITPDHLDRYDSFDDYTDSKLSLYRYC-- 201

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVE 296
                ++  D+     ++ + +NA    + +  +            C +     V +SV 
Sbjct: 202 --QDLVVNLDEV----IVPKKNNAKHFGIDMPKRADDFGTVTCHGSCYLIKGDDVVMSVS 255

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L GE  V N L A  L   IG+   L+ + ++    +  R E+V      G
Sbjct: 256 ------EMQLIGEHNVANMLAALALGDQIGLSVELMAQSIKNFKGLEHRLEWVAKKQ--G 307

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             Y + +  +NS+  I      I     IV+   G  +++    +   I  ++  + ++ 
Sbjct: 308 VDYYNDSKATNSISTIQALKALIDKHENIVLIAGGIAKEEDYSVMFKLIDENVFGVVLI- 366

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                     +  A+    +  P         EA+  A  MLN   +++
Sbjct: 367 ---------GQSAADFGQSLNRPQVSYAQTMSEAVNLASGMLNDGVIVL 406


>gi|170702957|ref|ZP_02893793.1| UDP-N-acetylmuramate [Burkholderia ambifaria IOP40-10]
 gi|170132129|gb|EDT00621.1| UDP-N-acetylmuramate [Burkholderia ambifaria IOP40-10]
          Length = 461

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 114/361 (31%), Gaps = 30/361 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +        + V+ R       V   G  G +  L     +   ++  + 
Sbjct: 208 VRTVPGVGRLVTNGRSDALERVLAR--GCWSEVERFGVDGGWQALPAEDGVPVDERFAVY 265

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + +      + + G+    NAL A      +G+  A   E L     V  R E  G + 
Sbjct: 266 SQSERVGAVAWQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEVRG-SI 324

Query: 354 RGGRIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDL 409
            G  +Y D+AH   ++E     L+      + RI+ V          G        +L  
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGHQNSRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 410 ADIAIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD+       P   D     +   +           +    +++ +E     D ++V   
Sbjct: 385 ADLVFGYG-APAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARPGDHVLVMSN 443

Query: 468 G 468
           G
Sbjct: 444 G 444


>gi|320105953|ref|YP_004181543.1| UDP-N-acetylmuramate [Terriglobus saanensis SP1PR4]
 gi|319924474|gb|ADV81549.1| UDP-N-acetylmuramate [Terriglobus saanensis SP1PR4]
          Length = 481

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 150/399 (37%), Gaps = 30/399 (7%)

Query: 85  TIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
            I    P L  V + R      A+ ++ +  +    L V GT GK++  S +  I + + 
Sbjct: 74  AISRGNPELEYVLDQRVCFVSMAALIHDEFLQEREPLVVCGTHGKTTTTSMLAWIYEVAS 133

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  ++  +  I   A++      +   +         +G  + +          H    
Sbjct: 134 RTMPELAASFLIGGVAEN----FGTSFLVRLETKPFILEGDEYDTAFFDKGPKFLHYF-- 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
               A   T++  DH D +   +A   A  RL   L+P+    + +   A   E + RA 
Sbjct: 188 --PDAAILTHVEYDHADIYADLEAVKTAFKRLV-NLVPRRGRIVAFDGSANVTECVARA- 243

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
              C V   G++       K        + T+  EGK F D   P+ GE    NA  AA 
Sbjct: 244 --FCAVERYGFEPSSYWQMKDFKGGASTKWTLLREGKHFADLELPMAGEHNALNATAAAA 301

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
           +    G+ +  ++E L     V  R E V     G  I  D+AH   ++   L+ +R+  
Sbjct: 302 MAAGQGVPAVAIVEALASFRSVKRRLE-VRAEVNGITIIDDFAHHPTAIRETLRALRSAY 360

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKI-----ALDLADIAIVTDDN-PRSE--DPEKIRAE 431
              R+I V     +  +        I     A ++A  ++   +  P +E  +P+++ A 
Sbjct: 361 PDRRLIAVLEPRSNTLRRNVFEADLIDSLSGANEVALASVFKSEAIPTTERLEPQRVVAG 420

Query: 432 IIH-GIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +   GIP  +      +AI T +   L   DV+ +   G
Sbjct: 421 LTQIGIPAQLYSD--ADAIVTGLTPRLLPGDVVAILSNG 457


>gi|255659950|ref|ZP_05405359.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
 gi|260847824|gb|EEX67831.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
          Length = 466

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 96/286 (33%), Gaps = 21/286 (7%)

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A          +       +  N+  DHI  H + + Y   K RLF E   ++   +
Sbjct: 164 CIAAEISSYQMEATEHFHPHVAAVLNVTPDHIVRHGSMEVYQAMKERLFRE-ETEDDYLV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--- 302
           +  DD  ++ +  R     C       + +      V        + I  +G++++    
Sbjct: 223 LNYDDEKTRGMKARTVAQVCY---FSRREELEEGVFVRGDVKNGLIVIRWQGQEYELCHT 279

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G   V NAL A  +    G +  L++  L+    V  R E+V T          
Sbjct: 280 DELGIKGPHNVENALAAIAVAFFAGCEPTLMVPVLKSFRGVEHRIEYVTTIDGVPYYNDS 339

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  ++S    L+          I++   G D+       M  +   +  + ++     R
Sbjct: 340 KATNTDSAIKALETFDGH-----IILLAGGDDKMTDLTDFMKLVCERVDALVLIGRAAAR 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVV 464
                   A + +G P         +  +A+  A  +  +  V+++
Sbjct: 395 FY-----GAAVDNGFPENQIYAAGYSMRKAVEIAHALAKEPAVVLL 435


>gi|124026491|ref|YP_001015606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL1A]
 gi|123961559|gb|ABM76342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL1A]
          Length = 469

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 142/411 (34%), Gaps = 55/411 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILV---VDNTRKFLSLFASRLYGKHPENILAV--- 120
           G + I++     + +F+  I S   I V   +D     L     +      E  LA    
Sbjct: 56  GIKVILLDEPLHINNFTPWIESVCSITVSPGIDWEHIALKELRGKNINVQGEVELAWERL 115

Query: 121 --------TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTPSPIYL 170
                   TGT+GK++V + +  I + + L++   G      S    ++ +       +L
Sbjct: 116 THIPSIGITGTNGKTTVTNMLNHILKLNNLNTDMGGNIGKALSKIALENMKNNNQELNWL 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              LS    +G                    +    G +T    DH++ H   ++Y    
Sbjct: 176 VLELSSFQIEG-----------------SPKVAPTIGIWTTFTPDHLERHNDIESY---- 214

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            ++   LL K S  I  +DD +     K         + VG   +  + +      +++ 
Sbjct: 215 FKIKRSLLEKSSIRIYNSDDQFLSSKRKELPKG----IWVGTNQQSFYSEYQKFWIDQKG 270

Query: 291 VTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                + + F   +  +PG+  + N L+       IG+D + + + ++    +P R E++
Sbjct: 271 YIFEDKKQLFHSSILKIPGKHNLQNLLLVIAAAREIGLDDSSIAKSIKSFRSIPHRLEYL 330

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +         A   +S    LK++        I++   G  +     P + +I    
Sbjct: 331 GKINNLSFYNDSKATNFDSSITGLKSVP-----HPIILLAGGIQKKGDFMPWVKQIKQST 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNK 458
             I +             ++ E++        I K N  EA   +I +  +
Sbjct: 386 NGIVLF------GLSANNLKEELLMSSYTGEIIIKKNLEEATIASINIARE 430


>gi|325478549|gb|EGC81661.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 118/333 (35%), Gaps = 37/333 (11%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V  I   SG+ +  +G                         L  +++        E SS
Sbjct: 1   MVTHILNESGIKAISVGNIG-------------------EGILWQMATNKDAVFVCELSS 41

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L  H +   K    + TN+  DHID+H T   Y  +K+ +  +   ++   II  +D 
Sbjct: 42  FQL--HDIKNYKPKIATITNISEDHIDWHGTFDDYIESKINI-SKNQDEDDYIIINHEDK 98

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++             S     + I LK        +++   ++  D      + G   
Sbjct: 99  ILQDHKSSYKAKIYEFSSKNEVKRGIFLKDSTIYLKDEKIEKLIDVDD----LLIIGNHN 154

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N + A+      GID + + + L+  + +  R E+V T S G ++Y D   T+  ++ 
Sbjct: 155 YGNIMAASLCAYLFGIDISDIKKALKTFNSIEHRLEYVDTIS-GVKVYNDSKGTN--VDS 211

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +K I +      I++   G ++       +         + I+       E  + +   
Sbjct: 212 SVKAIESF--NDPIIIIAGGYNKHIDYSAFVKAFKKKGKLMVIM------GETSDILVNL 263

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +I+  +  EA+  + +  +  DV+++
Sbjct: 264 CKEEGVSYIKAKDMKEAVDISFDHASYGDVILL 296


>gi|254368750|ref|ZP_04984763.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157121671|gb|EDO65841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 456

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 106/285 (37%), Gaps = 22/285 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI- 293
            + +P  +  I  A D   ++++     +    ++       + +       +  +  + 
Sbjct: 211 RK-MPSTAKIIYNAKDDNVQKIISMGCWSELVKVNF-----DLGISITKHTLDYSKFELC 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + G   +  + L GE    NA+ A  +   + I   +V + LE    V  R E V ++ 
Sbjct: 265 DINGNSVEVSWGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVKRRLE-VLSHQ 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 324 DNVTLYDDFAHHPTSIKLTLEAVRNKAKDAYVVALIDPRSNTMRQ 368


>gi|254779283|ref|YP_003057388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori B38]
 gi|254001194|emb|CAX29160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori B38]
          Length = 493

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 142/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDDKSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        +++V        +K + +        + +
Sbjct: 277 SKHLEKAFC-------YSVEKIKPYAPKDSPLINVS-----SLVKNIQSTLKGTSFEMLL 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + GEF  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 DSVWERFETKVLGEFSAYNIASAILIAKYLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNVESNEALAQKIDGVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|227893335|ref|ZP_04011140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           ultunensis DSM 16047]
 gi|227864750|gb|EEJ72171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           ultunensis DSM 16047]
          Length = 459

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 117/353 (33%), Gaps = 41/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I     Q+SG  ++ +G      S              L
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATK---DDIL 169

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S     GVT +                +  I   + N+   H+DYH+T + Y NAK
Sbjct: 170 VVEISSFQLLGVTDID-------------PKVAAIVDIYNNV---HLDYHKTFENYVNAK 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +         +   I   D        K+   A  +  S         +         ++
Sbjct: 214 LN-VTRTQTSDDYFIANYDQKDILAKEKKVSPAKIQTFSETDHNADYFIGDEYLESQNEK 272

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +    +         LPG   + N++VA  +   +G D+  +   L        R ++V 
Sbjct: 273 IMKIAD-------IKLPGIHNLQNSMVAIAISKIMGADNDDIAAVLSTFAGAKHRLQYVT 325

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++Y D   T+  +E     I         V+   G DR      ++      + 
Sbjct: 326 T-LDGRKVYNDSKSTN--IEAATVAIPAFKEPE--VLIAGGLDRGFTFDDLVPLFKKHVK 380

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I +  +      D  +       GI   +      EA+  A E+    DVL+
Sbjct: 381 AIVLYGETKYLLADAAR-----KAGIKEIVIVNTLQEAVPRAYELTQPGDVLL 428


>gi|194477145|ref|YP_002049324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
 gi|171192152|gb|ACB43114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
          Length = 457

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 140/390 (35%), Gaps = 45/390 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+VS        +                    + A  + GK P   +A+TGT+GK++V 
Sbjct: 72  IIVSPGIPWDHPTLNNLRQNCF-----PLMGEMVLAWEVLGKIP--WIAITGTNGKTTVT 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  +   +GL +   G                 S   LA +LS         + VE S
Sbjct: 125 HLVNHLLSYAGLEAPMCGNIG-------------FSATDLALSLSKKKINIPDWLIVELS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ ++   +  I+     +T L  DH++ H T   Y + K  L E      +  I+ ADD
Sbjct: 172 SYQIESAPV--IRPNIVLWTTLTPDHLERHNTLFNYRSIKSSLVEN----SNYQILNADD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGE 309
                      NA    +S   Q       K         VT + +G  F    F L G 
Sbjct: 226 LDLSSSAGSWPNANW--VSTDLQFALSKNIKPVLWIADGYVT-NQDGPIFSADGFNLVGV 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSNS 368
               N L+AA + + I +   ++ E       VP R + +  + +G   Y D  A   ++
Sbjct: 283 HNQQNLLMAAAVGLKISLSPKIISEAFRCFPGVPHRLDLI-RSYKGIHFYNDSKATNYDA 341

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            E+ +K +        I+V   G  +       + ++      + +        +D E++
Sbjct: 342 AEVAIKAVE-----GPIIVLAGGQTKKGEANGWISQLKAKAKAVVLF------GQDKEQL 390

Query: 429 RAEIIH--GIPGFIEKGNRIEAIRTAIEML 456
           ++ +     I G     +  EA+  ++++ 
Sbjct: 391 KSLLQSSNYIGGIHCCSSLKEAVPLSLQLA 420


>gi|90418196|ref|ZP_01226108.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337868|gb|EAS51519.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 470

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 102/300 (34%), Gaps = 35/300 (11%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V+S    L      ++  +     + V+ +   F      R         +A+TGT+
Sbjct: 67  AALVLSPGVPLTHPRPHWTVALAYAAGVEVIGDIELFCRE---RRALAPEAPFVAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +      +G      G                         ++        H
Sbjct: 124 GKSTTTALIAHCLAHAGRDVQLGGNIGV-------------------AVMTLAPPAPERH 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VE SS+ +D      I+   G   NL  DH+D H +  +Y   K RL          A
Sbjct: 165 YVVECSSYQIDLA--PTIEPSIGLLLNLTPDHLDRHGSMSSYAAVKARLVAG----SQLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           I+  DD + +++     + G  V+ +                  +++    E   D   +
Sbjct: 219 IVGVDDPHCRQIADELESEGHTVVRISQTDGLDAGVGFDGRMLHRRMEGRPEASFDLSAI 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA  A  +  A+G+    ++  LE    +  R E VG    G  ++V+ +
Sbjct: 279 GSLRGRHNGQNAAAAVAVFTALGLSDEEIVAGLESFPGLAHRMEEVG--RAGSVLFVNDS 336


>gi|261342895|ref|ZP_05970753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288314798|gb|EFC53736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 459

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 119/361 (32%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A     I +  G     +     +      +     SP ++ +A 
Sbjct: 103 RWVVAVAGTHGKTTTAGMATWILEACGYKPGFV--IGGVPGNFDVSARLGDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D     +A       L 
Sbjct: 161 EYDCAFFDKRSKFVHYC------------PRTLILNNLEFDHADIFDDLKAIQKQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I+  +D   K+ M  A         VG QG     KK  A  ++  V + 
Sbjct: 209 -RIVPGQGRIILPENDINLKQTM--AMGCWSEQELVGEQG-HWQAKKRNADASEWDVLLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  +  + L GE  ++N L+A      +G+  A   + L        R E  G  + 
Sbjct: 265 GE-KVGEVKWGLVGEHNMHNGLMAIAAARHVGVVPADAAKALGTFINARRRLELRG-EAH 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RI+ V     +  +          +L  AD
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGICKDDLAPSLGRAD 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGK 467
              +         P+ I  ++       I+  +    +    +M        D ++V   
Sbjct: 383 EVFLLQ-------PQHIPWQVAEVADACIQPAHWSADVDVLADMVVKAAQPGDHILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|254524866|ref|ZP_05136921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stenotrophomonas
           sp. SKA14]
 gi|219722457|gb|EED40982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stenotrophomonas
           sp. SKA14]
          Length = 469

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 42/340 (12%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV-THVSVEAS 190
            V  + + +G  +  +G                         L  L  Q    + +VE S
Sbjct: 132 LVAHLLRAAGHRTGLVGNIGL-------------------PLLEVLDPQPAPEYWAVELS 172

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+   +    G         NL  +H+D+H ++Q Y   K+RL  E  P+   A++ A D
Sbjct: 173 SYQTGEVARSGAHPQVAVVLNLFPEHLDWHGSEQRYIEDKLRLVTEAAPR--IAVLNAAD 230

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +    +         V+       +     V  +H  +Q              PLPG  
Sbjct: 231 PH----LAALSLPDSEVVWFNQPQGWHMRGDV--VHRGEQPVFDTRN------TPLPGRH 278

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N         A+G+D+  +   ++    +P R + +G       +    + T ++  
Sbjct: 279 NRGNLCAVLAALEALGLDAVALAPAVQDFRPLPNRLQRIGVADGLAYVNDSISTTPHASL 338

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428
             L+      +G+ I +   G DR       M  +A D+  + IVT   + PR     + 
Sbjct: 339 AALECF----AGQRIALLVGGHDRGLDWTDFMQHMAHDVPPVEIVTMGSNGPRIHAMLQP 394

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            A+   G  G    G+  EA+  A   L +Q  +V+   G
Sbjct: 395 LAD--AGRFGLHAAGDLPEAMALARAALGEQGGVVLLSPG 432


>gi|167626512|ref|YP_001677012.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189082909|sp|B0TZ72|MURD_FRAP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167596513|gb|ABZ86511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 414

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 133/392 (33%), Gaps = 65/392 (16%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS    L      + S     +V +   F               ++AVTG++GKS++ + 
Sbjct: 60  VSPGIPLNKSPYRVLSKFKQKIVSDIDLFYQSI-----RNTKAKMIAVTGSNGKSTIVTM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  + +  G  S  +G   T        +                      +  VE SS 
Sbjct: 115 LDFVLRDMGYKSILVGNIGTPPLNKIGEKF--------------------DYCVVEVSSF 154

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +D    + ++   G   N+  DH+D ++  + Y  +K+ L                   
Sbjct: 155 QIDLF--NSVEFDLGCVVNVSLDHLDRYKNYEEYKQSKLNL------------------- 193

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +  K           + Y G++  ++        + + I+           L GE  +
Sbjct: 194 -AKFSKDFFVYDVHNTGIKYAGEYQIVRGSIYKDTTKLLDIT--------ETNLFGEHNL 244

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N +V   +    GID +  +  ++K   +  R E V   +  G  Y++ +  +N +   
Sbjct: 245 ENIIVVLNIFDRFGIDISKAVAAIKKFKGLKHRCEIV--KNIAGVTYINDSKGTN-VGAT 301

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  + +ITS + I++   G  +      +   +A        +       +D E I   I
Sbjct: 302 IAALNSITSSKNIILLLGGVAKGGDFSLMSKSLA-KYVKYVYL-----YGQDKEYIENYI 355

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  +    +  +A R A +     +++++
Sbjct: 356 KD-MCRYQICNDMKDAFRLASQKAQDSEIVLL 386


>gi|16330482|ref|NP_441210.1| cyanophycin synthetase [Synechocystis sp. PCC 6803]
 gi|8134384|sp|P73833|CPHA_SYNY3 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|1652973|dbj|BAA17890.1| slr2002 [Synechocystis sp. PCC 6803]
          Length = 873

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 125/360 (34%), Gaps = 37/360 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G +   +G TST + +  +  +          A   L    V    +E + 
Sbjct: 505 LLAHIYRQTGKT---VGYTSTDAIYINEYCVEKGDNTGPQSAAVILRDPTVEVAVLETAR 561

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           AK++ +  E++     A++ ADD
Sbjct: 562 GGILRAGLAFDTCDVGVVLNVAADHLGLGDIDTIEQMAKVKSVIAEVVDPSGYAVLNADD 621

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEGKD----- 299
                V   A     +V           ++       + A++    V+I +EG       
Sbjct: 622 PL---VAAMADKVKAKVAYFSMNPDNPVIQNHIRRNGIAAVYESGYVSI-LEGSWTLRVE 677

Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGT 351
                         F + NAL A       G+D  ++ + +          PGR      
Sbjct: 678 EATLIPMTMGGMAPFMIANALAACLAAFVNGLDVEVIRQGVRTFTTSAEQTPGRMNLFNL 737

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 +  DYAH       +   ++     R  VV G G  RD     + G+IA  + D
Sbjct: 738 GRYHALV--DYAHNPAGYRAVGDFVKNWHGQRFGVVGGPGDRRDSDLIEL-GQIAAQVFD 794

Query: 412 IAIV-TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV  DD+ R     +    I+ GI        +    +   A+  A++ + ++ ++VV
Sbjct: 795 RIIVKEDDDKRGRSGGETADLIVKGILQENPGAAYEVILDETVALNKALDQVEEKGLVVV 854


>gi|189499820|ref|YP_001959290.1| Mur ligase middle domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495261|gb|ACE03809.1| Mur ligase middle domain protein [Chlorobium phaeobacteroides BS1]
          Length = 476

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 93/283 (32%), Gaps = 22/283 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+  DH D   +      +  R F  L+P     I+   D  + E+  +A  
Sbjct: 182 RPDIAVINNIEFDHADIFSSLDDIVKS-FRQFIALIPSNGLLIVNGHDTIASEISSQA-- 238

Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320
             C V   G    F   +  +     +    ++ +G           G   + N + A  
Sbjct: 239 -FCPVERFGMSEAFEWSVSDIDVSETETSFQLAHKGNIAGTIRIDQFGSHTILNTVAAVA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
                GI   ++ E +        R E VG    G  +  D+AH   ++   L ++R   
Sbjct: 298 AASHAGIPFPVIAEGVRSFKRPKRRMEIVGEFDNGITLIDDFAHHPTAISATLSSLRQRF 357

Query: 380 TSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--------DPEKIRA 430
              RI+  F        +       + +   ADI I+   + R E        D +K+ +
Sbjct: 358 PERRILACFEPRSNTSTRNIFQKDLENSFSDADIVIIGKVH-RPERYAEHERLDTQKLCS 416

Query: 431 EIIHGIPGFIEKGNR-----IEAIRTAIEMLNKQDVLVVAGKG 468
            +        + G        + +R   E +   D++++   G
Sbjct: 417 SLAGSGKKVFQSGKDPAGYPEDIVRFIHENIRPDDLIILLSNG 459


>gi|188990288|ref|YP_001902298.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732048|emb|CAP50238.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris]
          Length = 452

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 138/404 (34%), Gaps = 31/404 (7%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSV 129
           + + A  +   +A  R N  +  V +  +  S  A  L        N LAV GT GK++ 
Sbjct: 59  ISADAQDVVIGNALSRGNAAVEAVLDAGRRYSSGAQWLAEHVLPGRNTLAVAGTHGKTTT 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  + + +G +   +     I   A+D          L +   ++        +   
Sbjct: 119 TTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGQEFVVEADEYDTAFFD 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                  +R      +     NL  DH D      A       L    +P     I+  +
Sbjct: 170 KRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVPARGRLIVNGE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           DA   EV+  A      V   G+        ++ A    +   +    +     +PL G 
Sbjct: 224 DARLAEVL--AMGCWTPVERFGFDPALDWSAQLLADDGSRFAVLHRGEEIGQVQWPLLGR 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V N L A     A+G+D A V+  L +   V  R E +G  ++G  +Y D+AH   ++
Sbjct: 282 HNVLNGLAALAAVQAVGVDPATVMPALARFQSVKRRLEVLG-QAQGITVYDDFAHHPTAI 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSE---D 424
              L+ +R       ++V                 +A  L  AD  +      R E   D
Sbjct: 341 ATTLQGLRAKVGTARVLVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL---HRPELAWD 397

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I A++  G     +  + +  +R   E+    D +V    G
Sbjct: 398 AAPIIAQV-RGQAHVAQDVDTL--LRMLGEIAQPGDHVVFMSNG 438


>gi|108563149|ref|YP_627465.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1]
 gi|107836922|gb|ABF84791.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1]
          Length = 493

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +          +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDINQNLDDKSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++ V        +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDVS-----SLVKNIQSTLKGTSFEMLL 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + GEF  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 DSVWERFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLHKGRKVIVTPGLVESNTESNETLAQKIDGVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|51595036|ref|YP_069227.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186894042|ref|YP_001871154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis PB1/+]
 gi|60390355|sp|Q66EK7|MURD_YERPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51588318|emb|CAH19926.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697068|gb|ACC87697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 438

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 124/326 (38%), Gaps = 48/326 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L   + +  +   + ++ +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVVSPGMALAHPALSEAAEAGVEIIGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G S    G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMAKAAGWSVGVGGNIGVPALT--------------------LLKQDNQLTVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R++E         I+
Sbjct: 158 ELSSFQLE--TTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYEN----AKVCIV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 212 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  A  L+ L     +P RF+ V        I    A 
Sbjct: 263 KLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQLVLERHGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC 390
              S E  L  ++    G + ++ G 
Sbjct: 323 NVGSTEAALDGLQ--VDGTLHLLLGG 346


>gi|22297617|ref|NP_680864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermosynechococcus elongatus BP-1]
 gi|30316021|sp|Q8DMN8|MURD_THEEB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22293794|dbj|BAC07626.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermosynechococcus
           elongatus BP-1]
          Length = 454

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 96/272 (35%), Gaps = 19/272 (6%)

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            V A            ++     +T L  DH++ H T  AY   K      L+      I
Sbjct: 162 WVIAEISSYQLESSPPLQPEFALWTTLTPDHLERHGTLDAYVATKA----HLMNGAKHVI 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFL 303
           +  DD Y ++ M    N   +   +  QG     K +       +  +  + +      +
Sbjct: 218 LNGDDPYLRQHM---VNRWPQAWWISTQGAIALPKGIAQGIYIAEDQVWFQDQPLLPTHI 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG     N L+A       GI +  + + +     VP R E +        I    A
Sbjct: 275 LQMPGRHNQQNFLLAVATAHLAGIPAETIAKGVAGFAGVPHRLERIRQWREVEWINDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++ E+ L+++    +G +I++   G  +    RP +  I    A + ++ +  P+  
Sbjct: 335 TNYDAAEIGLRSV----TGPVILI-AGGQAKKGDDRPWLNLIQEKAAWVLLIGEAAPQF- 388

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
              +    I       +E  +R  A+  A E+
Sbjct: 389 --AQRLEAIGFTNYEIMETLDR--AVAAAAEL 416


>gi|325519769|gb|EGC99074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. TJI49]
          Length = 131

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR +  G +FVA+ G + D H F+          +    A +     A   
Sbjct: 24  VTFERVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAAALVAHAPAG 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
              P++V   TR  L   A     +    ++AVTG++GK++V   +  I   +G
Sbjct: 76  LAMPLIVGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASIFAAAG 129


>gi|153947798|ref|YP_001402346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959293|gb|ABS46754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis IP 31758]
          Length = 438

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 124/326 (38%), Gaps = 48/326 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L   + +  +   + ++ +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVVSPGMALAHPALSEAAEAGVEIIGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G S    G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMAKAAGWSVGVGGNIGVPALT--------------------LLKQDNQLTVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 212 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  A  L+ L     +P RF+ V        I    A 
Sbjct: 263 KLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQLVLERHGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC 390
              S E  L  ++    G + ++ G 
Sbjct: 323 NVGSTEAALDGLQ--VDGTLHLLLGG 346


>gi|187931383|ref|YP_001891367.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712292|gb|ACD30589.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 456

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 20/284 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +P  +  I  A D   ++++       C    V              +   +     
Sbjct: 211 RK-MPSTAKIIYNAKDDNVQKIISMG----CWSELVKVNSDLGISITKHTLDYSKFELCD 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G   +  + L GE    NA+ A  +   + I   +V + LE    V  R E V ++  
Sbjct: 266 INGNSVEVSWGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVKRRLE-VLSHQD 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 325 NVTLYDDFAHHPTSIKLTLEAVRNKAKDAYVVALIDPRSNTMRQ 368


>gi|170025735|ref|YP_001722240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis YPIII]
 gi|169752269|gb|ACA69787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis YPIII]
          Length = 438

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 124/326 (38%), Gaps = 48/326 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L   + +  +   + ++ +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVVSPGMALAHPALSEAAEAGVEIIGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G S    G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMAKAAGWSVGVGGNIGVPALT--------------------LLKQDNQLTVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 212 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  A  L+ L     +P RF+ V        I    A 
Sbjct: 263 KLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQLVLERHGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC 390
              S E  L  ++    G + ++ G 
Sbjct: 323 NVGSTEAALDGLQ--VDGTLHLLLGG 346


>gi|227544876|ref|ZP_03974925.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri CF48-3A]
 gi|300909904|ref|ZP_07127364.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri SD2112]
 gi|68160890|gb|AAY86891.1| lr1633 [Lactobacillus reuteri]
 gi|227185150|gb|EEI65221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri CF48-3A]
 gi|300892552|gb|EFK85912.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri SD2112]
          Length = 456

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/419 (16%), Positives = 147/419 (35%), Gaps = 52/419 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----------SLF 105
           +  +    A G + I   +  SL +    +    P +  DN                +  
Sbjct: 46  NDIVDDLKADGIKVITGDNPISLANEGFDVVVKNPGIPYDNPLVAAFVKQGTPIITEAEL 105

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
             +++  H   +++VTG++GK++  +  Q     +  + +Q+     I            
Sbjct: 106 GWQIFDGH---LVSVTGSNGKTTTTTLTQ--LMIAENAKYQVKYAGNIGISFSKIAEDLG 160

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               L   LS     G                    I       TN+  +H+DYH+T++ 
Sbjct: 161 PDDTLVTELSSFQLLGA-----------------PTIHPHIAIITNIFSNHLDYHKTREN 203

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y NAK+ +      K+   +I  D    +++ +R+         +    +  +++     
Sbjct: 204 YINAKLNI-TRNQTKDDFLVINWDRDEWQKIAQRSQATIVPFSRLNKSHEGSYVEDGMIY 262

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              Q+V  + +         L G   V NAL A       G+ +  + + L     V  R
Sbjct: 263 WRGQEVMPTKD-------IRLIGPQNVENALAAIAAAKLSGVTNDAIKKVLTTFSGVRHR 315

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            ++V       R++ + + +++ +E     ++       +V+   G DR      ++   
Sbjct: 316 LQYVMEYQE--RLFYNDSKSTD-IEATEVALQGFDRP--VVLLAGGLDRGYTFERLVPYF 370

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  + +  +   + +D          G+P  IE  N I A+  A ++    DV+++
Sbjct: 371 KKHVKAMIVFGECKDKMKDAGN-----QAGVP-VIESENAITAVPEAWKLSEPGDVILL 423


>gi|116749106|ref|YP_845793.1| FolC bifunctional protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698170|gb|ABK17358.1| FolC bifunctional protein [Syntrophobacter fumaroxidans MPOB]
          Length = 431

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 126/396 (31%), Gaps = 49/396 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDN 160
           L             + + GT+GK S A+ +  + ++ G+          +     F  D 
Sbjct: 34  LLMRLGNPHRSLRCIHIAGTNGKGSTAAMLSSMLRKHGVRVGLYTSPHLVRFTERFRIDE 93

Query: 161 R--------------------LTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHRL 199
           R                       P+   +  A++ L         +V  +  G      
Sbjct: 94  REVRIDRILAIFEKVRKQIDDREPPTFFEVVTAMALLLFAEENVEWAVIETGMGGRLDAT 153

Query: 200 DGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + I       TN+  DH +Y   T  +    K  + +E +P  +             +  
Sbjct: 154 NVIHPRVSVITNVTFDHQEYLGSTLSSIAREKAGIIKEEVPVVTGVTQPL---VHGVLTA 210

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   +  +G + K        A +        ++         LPG  QV NA +A
Sbjct: 211 TCQRKRAVLYRLGKEFKARRRPGGAARYQG------LKWDWPSLEISLPGVHQVRNAALA 264

Query: 319 AGLCIAIG------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
             +   +       IDS  V   L  +     R E +G   R   I +D AH     E +
Sbjct: 265 IAVLEVLEEKGDFYIDSGAVELGLSAVRWP-ARLEVLG---RRPLIVLDGAHNPQGAESL 320

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRA 430
              +R   T  ++ +V G   D+D      + +  L LA+ AI T     R+   +++R 
Sbjct: 321 RDALRNCFTYQKLHLVMGIMEDKD---IAGIFRRLLPLAETAIFTQPRYSRAAKADRLRQ 377

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                        +  EAI+ A       D++ + G
Sbjct: 378 LARPYAGNHCVIPDVAEAIQQAGRFAGPDDLICITG 413


>gi|323527382|ref|YP_004229535.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1001]
 gi|323384384|gb|ADX56475.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1001]
          Length = 464

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 117/360 (32%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 149

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 150 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAI-ETQFHHL 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P+    +    +   + V+ R       V   G QG +        +   ++  + 
Sbjct: 209 IRTVPRIGRVVTNGREDALERVLTR--GCWSEVERFGVQGGWETQPAEDGVPVDERFAVY 266

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +    + + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 267 HNAERVGVVEWQVQGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVKRRMEVRG-SV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   +++  +  +R         I+              +  ++   LAD
Sbjct: 326 DGVTVYDDFAHHPTAIDTTVAGLRARVGRDNTRILAVLEPRSNTMKLGVMKAQLPGSLAD 385

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
              +     P   D       E +  +    +  + ++A ++  +      D ++V   G
Sbjct: 386 ADLVFGYGAPSGRDALGWNLGEALAPLGAKAQAFDNLDALVKAVVHAARPGDQILVMSNG 445


>gi|282899544|ref|ZP_06307508.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195423|gb|EFA70356.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii
           CS-505]
          Length = 860

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 127/358 (35%), Gaps = 30/358 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  +          A   L    V    +E++ 
Sbjct: 479 LLAHIYKQTGQ---IVGYTTTDGTYIGDFLVEAGDNTGPQSAHLILQDPTVEVAVLESAR 535

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+      T +   N K  + E + P +  A++ AD
Sbjct: 536 GGILRSGLGFEFANVGVVLNVAADHLGIGDIDTIEQLANLKSVVSEAVFP-DGYAVLNAD 594

Query: 250 DAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----------EGK 298
           D     + ++   N     ++   +    H++K       +   +S+          + +
Sbjct: 595 DYRVAAMAEKTKANIAYFTMNPDSELVQRHIQKGGVAAVYENGYLSIVKGDWTHRIEKAE 654

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
                      F + NAL A+       +    +   L          PGR         
Sbjct: 655 SIPLTMSGKAPFMIANALAASLAAFVQNVTIEQIRAGLRSFRASVSQTPGRMNLFNLGKY 714

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH   S + +   +R  TSG+ I V G  GDR       +GK+A ++ D  I
Sbjct: 715 HALV--DYAHNPASYQALGSFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYII 772

Query: 415 V-TDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           V  DD+ R          II GI        +    +  +AI   ++M     ++V+ 
Sbjct: 773 VKEDDDTRGRPRGSGSDLIIQGITQTKVNCRYESILDETQAINKGLDMAPDGSLVVIL 830


>gi|329667558|gb|AEB93506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii DPC 6026]
          Length = 460

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 111/350 (31%), Gaps = 34/350 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQR-SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              + VTG++GK++     Q+I       +         I     +      S   L   
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMDHNLSKNGGHAYAVGNIGVPISEVVEKATSKDLLVVE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +S     GVT +                +  I   + N+   H+DYH+T   Y  AK+++
Sbjct: 173 MSSFQLLGVTDIK-------------PKVAAIVDIYNNV---HLDYHKTFDNYVEAKLKI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   ++   I   D     E       A  +  S   +     +             +
Sbjct: 217 -TQSQDQDDYFIANFDQKNILEKELDKTKAKVQTFSETDKTADYFIGDEYLESKDDHHIM 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG     N LVA  +   +G D++ +   L        R ++V T  
Sbjct: 276 KISD------IKIPGIHNQQNCLVAIAISKLMGADNSDIQYALSTFTGATHRLQYVMT-Y 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +IY D   T+  +E     I +       V+   G DR      ++      +  I 
Sbjct: 329 NDRKIYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFMFDSLVPLFKKHVKSIV 384

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +      D  +       GI   +      EA+  A E+    DV++
Sbjct: 385 LYGETKYLLADAAR-----KAGIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|29840624|ref|NP_829730.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           caviae GPIC]
 gi|33301359|sp|Q821S1|MURD_CHLCV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29834974|gb|AAP05608.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           caviae GPIC]
          Length = 419

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 131/395 (33%), Gaps = 71/395 (17%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            V S                 I +V + +             H    + +TG++GK++  
Sbjct: 63  FVRSPGVKPSHSLVVEAKRRGIPIVTDVQLAFQD-----PEFHRYPSIGITGSAGKTTTV 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F+  + +  G+ +F +G                         L  +  +G+    VE S
Sbjct: 118 LFLVHLLRSMGMGAFAMGNIGV-------------------PILQAMREKGIRV--VEIS 156

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L +  ++   L   +  N+  +H+DYHQ+ Q Y  AK  + + L   ES  +     
Sbjct: 157 SFQLTEQEIETPVLSGAAILNISENHLDYHQSLQNYSEAKRNITKCLQSVESLWV----- 211

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                                  G+++   K    + K+  ++  +G     L       
Sbjct: 212 -----------------------GEWLSPGKSYLDYTKEIASVLDKGSALKPL----YLH 244

Query: 311 QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              N   A  L   I  +     L+ L+     P R E++G       I    A T +S+
Sbjct: 245 DRSNYCAAYALANEISNVPLEAFLQALQTFEKPPHRIEYLGEKDGVSYINDSKATTMSSV 304

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  ++       ++V   G ++      ++  I        +   +  R+E      
Sbjct: 305 EKALIAVKE-----NVIVILGGRNKGSDFTSLI-PILTQTVKHIVAMGEC-RNE-----I 352

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A+ + G     +  +  EA+  A  +    DV+++
Sbjct: 353 AQALSGSLPLTQARDLQEAVSMAQSIAQPGDVILL 387


>gi|225849192|ref|YP_002729356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643195|gb|ACN98245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 424

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 120/311 (38%), Gaps = 18/311 (5%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L  +     K       N+ +DH+D+H+  + Y  +K ++F+    +E 
Sbjct: 126 DVAILELSSFQL--YSTKTFKPKIAVILNISKDHLDWHKKMKHYILSKFKIFKNQT-EED 182

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+  DD   K++  ++      +  +    K I+LK +             E  D   
Sbjct: 183 YLILNYDDNCLKQIKAKSQIYYFSLNQLPQDKKGIYLKNIEKSGEYILTLQDKEKIDIKV 242

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G   + N + +  +    G+D   VL+ +++   +  R EFV ++  G   Y D 
Sbjct: 243 KTSLVGLHNLQNIMASLVVSYLYGLDLDKVLKVIQEFKPLSHRIEFV-SSINGVSFYNDS 301

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  ++ + K I +      +V+   G ++      +  K+   +    I+       
Sbjct: 302 KATT--VQAVEKAIDSFDKN--VVLILGGINKGGDFSVLKDKLKQKVKKAIII------G 351

Query: 423 EDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            D  +I++ I       +E  +   EA+  +     K D + +   G  +  +  +   +
Sbjct: 352 RDKNQIKSMIEEYTQ--VELADSLEEAVIKSYNTAEKGDTV-ILSPGCASFDMFKSYADR 408

Query: 482 MSVDCDIIREI 492
            +   +I++ +
Sbjct: 409 GNQFINIVKNL 419


>gi|298207703|ref|YP_003715882.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Croceibacter
           atlanticus HTCC2559]
 gi|83850340|gb|EAP88208.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Croceibacter
           atlanticus HTCC2559]
          Length = 450

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 101/310 (32%), Gaps = 31/310 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSP 167
                 +  + + G+ GK+++ + +  +         + +G                   
Sbjct: 97  YEQSKQKTRVVIGGSHGKTTITAMILHVMNYHDKEVDYMVGAQL--------------EG 142

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 L+  +   V       SS    + +    K      + +  DHI+   T + Y 
Sbjct: 143 FDTMVHLTEENDFIVLEGDEYLSSPIDRRPKFHLYKPNIALLSGIAWDHINVFPTFENYV 202

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             + ++F + + +    +   +D   K+V + A     +           H     A   
Sbjct: 203 E-QFKIFADSMSRGGILVYNEEDPTVKQVAEEATAPTRK-----------HAYTTAAYSV 250

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +   T+ +E  +      + G   + N   A  +C  +G+D     E +        R E
Sbjct: 251 ENGKTL-LETPEGPMPIEIFGAHNLNNLAGAKWICQHMGVDEDEFYEAISTFKGASKRLE 309

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI-MGKI 405
            + T +    +Y DYAH+ + +    K ++      +++               +   + 
Sbjct: 310 KI-TENNNAVVYKDYAHSPSKVSATTKAVKNQYPDRKLVACLELHTYSSLNAEFLDQYEG 368

Query: 406 ALDLADIAIV 415
           ALD AD AIV
Sbjct: 369 ALDAADKAIV 378


>gi|315924805|ref|ZP_07921022.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621704|gb|EFV01668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 457

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 4/204 (1%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +D     A +  NL  DH++ H T + Y+ AK R+FE    ++   ++ ADDA    
Sbjct: 174 LETIDTFAPKAAAILNLAPDHLNRHGTLENYYAAKARIFENQSAED-ILVVNADDADVVR 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +++A +        G   K I+LK    +  +            +    + G   V NA
Sbjct: 233 CVRKAPSRKIWFSLKGRPEKGIYLKGQTLMIAEGTDADQDTAVITEEALGIKGPHNVMNA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A GL   +G+   ++ + L     V  R EFV T   GG  Y++ +  +N+ +  +  
Sbjct: 293 MAAIGLAYFMGVPLVIIQKTLRAFKGVEHRQEFVAT--IGGVDYINDSKGTNT-DAAITA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKR 399
           +  +T   I++  G     D  + 
Sbjct: 350 LNAMTKPTILIAGGYDKQEDYTRM 373


>gi|167946373|ref|ZP_02533447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 145

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 14/140 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQDL+     E+           +ER I+ ++ DSR++  G +F+A  G    G  F  Q
Sbjct: 13  LQDLLAG-LAEI--------DAAQERPISCLAIDSRNLCPGGLFLACQGGDRHGLDFTEQ 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           A+AQGA AI         +  A     +   P++ V+   +  SL A+R +     +  +
Sbjct: 64  ALAQGAVAIAWEPNGPEVNRQAERLATQLPIPLIRVEGLTRLASLIAARFFAYPSRSMTV 123

Query: 118 LAVTGTSGKSSVASFVQQIC 137
           + VTGT+GK+SV+  + Q  
Sbjct: 124 IGVTGTNGKTSVSHLLAQAL 143


>gi|114319765|ref|YP_741448.1| UDP-N-acetylmuramate [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226159|gb|ABI55958.1| UDP-N-acetylmuramate [Alkalilimnicola ehrlichii MLHE-1]
          Length = 453

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 113/357 (31%), Gaps = 25/357 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV+GT GK++ AS +  I + +GL+   +     + +    +      P ++ +
Sbjct: 101 HDRWVLAVSGTHGKTTTASLLAWILEYAGLNPGFL--VGGVPTNFGRSARLGDGPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                       +       N+  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFIHF------------RPRTLVIHNIEYDHADIFPDLAAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     I   D A   E + +        L  G    + +          + V 
Sbjct: 207 LV-RTVPGNGLIIANGDQANVAETLGQGCWTPTLRLGTGPDCDWRY----DLNGQGEMVL 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +        PLPG     N   A      +G+  +  L+ L     V  R E  G  
Sbjct: 262 RGGDATPLTARPPLPGLHNAANCAAALLAARHVGVPLSTGLDALAGFRGVKRRLELRGEA 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G R+Y D+AH   ++   L+ +R      + V+         G        AL  AD 
Sbjct: 322 G-GVRVYDDFAHHPTAIRATLEAMRPGPGRLLAVLEPRSNTMRMGIHRERLAAALAPADA 380

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     +  E   A+ + G+    E    + A ++   +     D +VV   G
Sbjct: 381 VFALQ----GKGLEWSVADALAGLTPPAEVAQDVPALVQRIRQQARPGDRVVVMSNG 433


>gi|134302482|ref|YP_001122452.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050259|gb|ABO47330.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 456

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 20/284 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +P  +  I  A D   ++++       C    V              +   +     
Sbjct: 211 RK-MPSTAKIIYNAKDDNVQKIISMG----CWSELVKVNSDLGISITKHTLDYSKFELCD 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G   +  + L GE    NA+ A  +   + I   +V + LE    V  R E V ++  
Sbjct: 266 INGNSVEVSWGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVKRRLE-VLSHQD 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 325 NVTLYDDFAHHPTSIKLTLEAVRNKAKDAYVVALIDPRSNTMRQ 368


>gi|300309737|ref|YP_003773829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gi|300072522|gb|ADJ61921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 118/367 (32%), Gaps = 32/367 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ----IGPTSTISSFAQDNRLTTPSPI 168
             + +LAV GT GK++ ++ +  + + +G         +     +S+    +    P+P 
Sbjct: 101 QDKWVLAVAGTHGKTTTSAMLAWVLEHAGYQPGFLIGGVPMNFGVSARLGSDGQGGPAPF 160

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           ++ +A  Y ++                       +       NL  DH D      A   
Sbjct: 161 FVIEADEYDTAFFDKRSKFVHY------------RTRTAVLNNLEYDHADIFPDLAAI-E 207

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            +       +P     I+   +   + V+ R     C      +             H  
Sbjct: 208 TQFHHLVRTVPGIGRLIVNGREPALQRVLARG----CWSEREDFGVAQGQSGWSLLTHED 263

Query: 289 QQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +  +  +G+      + L GE    NAL A      +G+  A  +  L     V  R E
Sbjct: 264 GRFDVFFDGQTQGTVEWQLTGEHNRMNALAAIAAARHVGVPVAQAIAALGAFQSVKRRME 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G ++ G  +Y D+AH   ++   +  +R       I+              +   +  
Sbjct: 324 LRG-SANGVAVYDDFAHHPTAIATTVAGLRKKVGAARILAVLEPRSNTMKLGTMKQALPG 382

Query: 408 DLADIAIV------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            LAD  +V      T  +    D  +  A +      F +    ++A++ A       D 
Sbjct: 383 SLADADLVFGFGAHTGRDALGWDLGEALAPLGAKAAAFDDLAALVQAVKAA---ARPGDH 439

Query: 462 LVVAGKG 468
           ++V   G
Sbjct: 440 VLVMSNG 446


>gi|206561753|ref|YP_002232518.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia J2315]
 gi|198037795|emb|CAR53739.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia J2315]
          Length = 461

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 114/365 (31%), Gaps = 38/365 (10%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +        + V+ R       V   G  G +  L     +   ++  + 
Sbjct: 208 VRTVPGVGRIVTNGRSDALERVLAR--GCWSEVERFGVDGGWQALPAEDGVPVDERFAVY 265

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +   +  + + G+    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 266 SHAERVGEVAWQVQGDHNRMNALAAIAAARHVGVPPAQAAVSLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   +++  +  +R         I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILAVLEPRSNTMKLGVMKSQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLV 463
              +     P   D     A   +        G+R  A       ++  +E     D ++
Sbjct: 385 ADLVFGYGAPTGRD-----ALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVL 439

Query: 464 VAGKG 468
           V   G
Sbjct: 440 VMSNG 444


>gi|194364791|ref|YP_002027401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347595|gb|ACF50718.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stenotrophomonas
           maltophilia R551-3]
          Length = 469

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 121/340 (35%), Gaps = 42/340 (12%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV-THVSVEAS 190
            V  + + +G  +  +G                         L  L  Q    + +VE S
Sbjct: 132 LVAHLLRAAGHRTGLVGNIGL-------------------PLLEVLDPQPAPEYWAVELS 172

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+   +    G +       NL  +H+D+H ++Q Y   K++L  E  P+   A++ A D
Sbjct: 173 SYQTGEVARSGARPQVAVVLNLFPEHLDWHGSEQRYIEDKLQLVTEAAPR--IAVLNAAD 230

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +    +        +V+       +     +  +H  +Q              PLPG  
Sbjct: 231 PH----LAALSLPDSKVIWFNQPQGWHMRGDI--VHRGEQAVFDTRN------TPLPGRH 278

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N         A+G+D+  +   ++    +P R + +G     G  YV+ + ++    
Sbjct: 279 NRGNLCAVLAALEALGLDAVALAPAVQDFRPLPNRLQRIGAAE--GLTYVNDSISTTP-H 335

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428
             L  +     G+ I +   G DR       M  +A D+  + IVT   + PR     + 
Sbjct: 336 ASLAALECFA-GQRIALLVGGHDRGLDWTDFMQHMAHDVPPVEIVTMGSNGPRIHAMLQP 394

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            A+   G  G    G+  EA+  A   L  +  +++   G
Sbjct: 395 LAD--AGRFGLHAAGDLPEAMALARAALGSEGGVILLSPG 432


>gi|121608457|ref|YP_996264.1| UDP-N-acetylmuramate [Verminephrobacter eiseniae EF01-2]
 gi|121553097|gb|ABM57246.1| UDP-N-acetylmuramate [Verminephrobacter eiseniae EF01-2]
          Length = 491

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 112/374 (29%), Gaps = 25/374 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTIS--SFAQDNRLTTPSPI 168
              ++LAV GT GK+  +S +  I + +G     +  G        +     +   P+P 
Sbjct: 109 PGRHVLAVAGTHGKTGTSSMLAWILECAGQQPGFLIGGVPLNFGLSARLGAPQRPLPAPA 168

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L     ++        +          +R            NL  DH D      A   
Sbjct: 169 PLGATPLFVIEADEYDTAFFDKRSKFVHYR-----PRTAVLNNLEFDHADIFADLAAIER 223

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---------- 278
               L    +P     ++   DA    V++    +      V     F            
Sbjct: 224 QFHHLV-RTMPASGRVVVNGLDASLARVLQMGCWSQVTRFGVDTMSAFGAEGTSAFGAET 282

Query: 279 LKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           +    A    Q   ++ +G+      + L G     NAL A      +G+D       L 
Sbjct: 283 ISAFGAEGPPQSFDVTHQGQKLARVEWALTGVHNQLNALAAIAAAQHVGVDPGQAAAALA 342

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQ 396
               V  R E  G    G  +Y D+AH  ++L   L    R++ +G  I+          
Sbjct: 343 TFRNVKRRMELRGIVG-GVAVYDDFAHHPSALRTTLDGLRRSLGAGARILAVFEPRSNTM 401

Query: 397 GKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
               +  ++  AL+ AD+A         +  + +    +          +    +    +
Sbjct: 402 KLGTMKSRLPWALEPADLAFCLTAGLDWDAAQALAPLGVGPGLRAQTAPDSATLLAQVTQ 461

Query: 455 MLNKQDVLVVAGKG 468
                D +V    G
Sbjct: 462 AARPGDHVVCMSNG 475


>gi|257056719|ref|YP_003134551.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharomonospora
           viridis DSM 43017]
 gi|256586591|gb|ACU97724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharomonospora
           viridis DSM 43017]
          Length = 458

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 132/405 (32%), Gaps = 41/405 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G   +V S  +       T  +++ I V+ +      +        +P   LAVTGT+GK
Sbjct: 61  GTRLVVTSPGWRPTAPLLTAAASSGIEVIGDVELAWRI---GQERPNPPTWLAVTGTNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++     + + + +G+ +   G                          + L +    H +
Sbjct: 118 TTTVGMAESMLRSAGVDAVACGNVG----------------------FAVLDAVLAGHST 155

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +         H    +   A    N+  DH+D+H     Y   K  +           + 
Sbjct: 156 LVVELSSFQLHWSRSLAPSASVVLNVAEDHLDWHGGLAEYAADKGTIHRG----SGTVVA 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D +S+++ +       R +             V       +  ++      + L  L
Sbjct: 212 NLRDPWSRKLAEEHAPPEARRVGFTLDTPRPGELGVVEDLLVDRAFVADPVHAAEELGTL 271

Query: 307 -----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                 G   V NAL AA L  A G+    V E L        R   V      G  Y+D
Sbjct: 272 ADVRPGGPHNVANALAAAALVRAYGVGPEAVAEGLRSFRPGAHRA--VEVGEFDGVRYID 329

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NP 420
            +  +N        I ++ +   +V    G  +      ++  +A  L  + ++  D + 
Sbjct: 330 DSKATNP----HAAIGSLLAHPSVVWIAGGQLKGASVDELVAAVAERLRGVVLLGADADV 385

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +E   +   +++    G  +      A++ A E+    D +++A
Sbjct: 386 FAEALARHAPDVLVRRIGSGDDEPMTAAVKAARELARPGDAVLLA 430


>gi|56707582|ref|YP_169478.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670053|ref|YP_666610.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456651|ref|ZP_03665124.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370102|ref|ZP_04986108.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874403|ref|ZP_05247113.1| mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604074|emb|CAG45071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320386|emb|CAL08454.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|151568346|gb|EDN34000.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840402|gb|EET18838.1| mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158739|gb|ADA78130.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 456

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 20/284 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +P  +  I  A D   ++++       C    V              +   +     
Sbjct: 211 RK-MPSTAKIIYNAKDDNVQKIISMG----CWSELVKVNSDLGISITKHTLDYSKFELCD 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G   +  + L GE    NA+ A  +   + I   +V + LE    V  R E V ++  
Sbjct: 266 INGNSVEVSWGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVKRRLE-VLSHQD 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 325 NVTLYDDFAHHPTSIKLTLEAVRNKAKDAYVVALIDPRSNTMRQ 368


>gi|304404008|ref|ZP_07385670.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346986|gb|EFM12818.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
          Length = 489

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 129/380 (33%), Gaps = 57/380 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  I+ +TG++GK++  +++ ++ Q +GL     G    I +   +      +   L   
Sbjct: 111 PAPIIGITGSNGKTTTTTWIGELLQAAGLRPIVAG---NIGTPLCEAAQEADASHTLVAE 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS    +G T                   +       N+   H+DYH   + Y  +K +L
Sbjct: 168 LSSFQLKGTT-----------------SFRPHVALLLNVVETHLDYHGGMEDYVASKAKL 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F      +  A++  DDA  + + ++  +            K ++++    +   Q    
Sbjct: 211 FANQT-ADDIAVLNWDDAICRTIAEQLESQLLPFSLTQRLDKGLYIEPPYEVEPDQPEHS 269

Query: 294 SVEGKDFDFLFPLPGEFQVY-NALVAAGLCI---AIGID--------------------- 328
           +      D     P    VY +A  A  + I    +GI                      
Sbjct: 270 AAGASAGDGALAAPMRNVVYRDAQGAETVVIPVDELGIPGKHNAANAMAAIAAAIASGAS 329

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   L +   V  R E+V    R G  Y + +  +N     +  +++      IV+ 
Sbjct: 330 IESLQAPLREFRGVEHRLEYVCE--RNGVTYYNNSKATNP-AATIVGLKSFPL-DRIVLI 385

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-- 446
             G DR      ++       A   +V+    R +     +   +  +     +G+    
Sbjct: 386 AGGLDRGSDYMELLPWFEQLKA---VVSLGETRGKLAHVAKLAGLTAVETVEPEGDAEAT 442

Query: 447 --EAIRTAIEMLNKQDVLVV 464
             EA+R A  +    DV+++
Sbjct: 443 LQEAVRRASALAESGDVVLL 462


>gi|319778486|ref|YP_004129399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
 gi|317108510|gb|ADU91256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
          Length = 478

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 140/357 (39%), Gaps = 43/357 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TGT+GK++V S V+ +C+ +GL S + G  S             PS + +     
Sbjct: 122 KIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGNIS-------------PSALTVVCEFE 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +S     +S+E SS  L     D I L A +  N+ +DHID+H + +AY  +K ++F 
Sbjct: 169 EKNSWP-DVISLELSSAQL--FYTDYICLDASTILNITQDHIDWHGSMEAYIASKKKIFS 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   A++  D+   KE      NA     S+    + I +K+V  +          
Sbjct: 226 H----SKIAVV--DENQFKEF--GLSNALVYRDSLPINKEDIGIKEVNGMKW-----FCT 272

Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             K+   +    + G   V NA+ A  LC AI +    +L  L        R  +V  + 
Sbjct: 273 TDKNLMPVEAMKIRGNHNVLNAMAAMQLCRAIDLPFEPLLTALRDYEAHNHRCTYV-RDI 331

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL---- 409
           +G     D   T+  +   +  I  +     +VV   G  + Q   P+   +        
Sbjct: 332 QGVNFIDDSKGTN--VGATVAAIDGMYRN--LVVILGGEGKGQDFTPLYESLRNRTKSNG 387

Query: 410 -ADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              I ++  D         I+  +    IP  +      EA+  + ++    D++++
Sbjct: 388 LKGIVLIGKDKNILSHYLNIKDFKFEETIP-VVVVNTIDEAVVESFKLAQSGDLVLL 443


>gi|161505077|ref|YP_001572189.1| hypothetical protein SARI_03211 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866424|gb|ABX23047.1| hypothetical protein SARI_03211 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 445

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 117/357 (32%), Gaps = 26/357 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ A     I +  G     +       +F    R        L ++L
Sbjct: 91  RWVLAVAGTHGKTTTAGMATWILEACGYKPGFV-IGGVPGNFEVSAR--------LGESL 141

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            ++        +          +             NL  DH D     +A       L 
Sbjct: 142 FFVIEADEYDCAFFDKRSKFVHY-----CPRTLILNNLEFDHADIFDDLKAIQKQFHHLV 196

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++P +   I   +D   K+ M  A         VG QG     KK+    ++ +V + 
Sbjct: 197 -RIVPGQGRIIWPENDINLKQTM--ALGCWSEQELVGEQG-HWQAKKLTTDASEWEVWLD 252

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E K  D  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 253 GE-KVGDVKWGLVGEHNMHNGLMAIAATRHVGVAPAEAASALGSFINARRRLELRG-EAH 310

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
           G  +Y D+AH   ++   L  +R    G  RII V     +  +          +L  AD
Sbjct: 311 GVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRAD 370

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    P    P ++       +      G+        ++     D ++V   G
Sbjct: 371 EVFLLQP-PHI--PWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNG 424


>gi|118497141|ref|YP_898191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323439|ref|ZP_03057216.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|254373970|ref|ZP_04989452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|158512419|sp|A0Q5C2|MURD_FRATN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118423047|gb|ABK89437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida U112]
 gi|151571690|gb|EDN37344.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|194322294|gb|EDX19775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|328676610|gb|AEB27480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
           novicida Fx1]
          Length = 417

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 147/392 (37%), Gaps = 65/392 (16%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS    L      + +     +V +   F                +AVTG++GKS+V + 
Sbjct: 60  VSPGIPLNKSPYRVLTKFKDKIVSDIDIFYQ-----YIKDTKAKTIAVTGSNGKSTVVTM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              + +  G  S  +G   T                    AL+ +  +   +  VE SS 
Sbjct: 115 TDFVLKDLGYKSILVGNIGT-------------------PALNKIGEK-FDYCVVEVSSF 154

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +D    + ++   G   N+  DH+D +Q  + Y  +K+ L +           +++D +
Sbjct: 155 QIDLF--NCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAK-----------FSNDFF 201

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +V    HN G +     Y G++  ++     ++ + + I+           L GE  +
Sbjct: 202 VYDV----HNNGIK-----YAGEYQIIRGAIYRNSTKLLDIA--------ETKLFGEHNL 244

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N +V   +   +G+D    ++ ++K   +  R + V      G  Y++ +  +N +   
Sbjct: 245 ENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKIV--KKVNGTTYINDSKGTN-VGAT 301

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  + +IT+ + I++   G  +  G   +M K          +        D E I + I
Sbjct: 302 IAALNSITNSKNIILLLGGVAKG-GDFSLMIKSLDKYVKYVYI-----YGADKEYIESYI 355

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             G   +    N  +A   A +  N  +++++
Sbjct: 356 -KGYCKYQLCNNMKQAFELASQKANSNEIVLL 386


>gi|22127502|ref|NP_670925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis KIM 10]
 gi|45443363|ref|NP_994902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108809539|ref|YP_653455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Antiqua]
 gi|108810584|ref|YP_646351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Nepal516]
 gi|145600344|ref|YP_001164420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Pestoides F]
 gi|150260412|ref|ZP_01917140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162420170|ref|YP_001607297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Angola]
 gi|165928206|ref|ZP_02224038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937844|ref|ZP_02226405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009082|ref|ZP_02229980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212214|ref|ZP_02238249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401289|ref|ZP_02306789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421918|ref|ZP_02313671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426438|ref|ZP_02318191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469522|ref|ZP_02334226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           FV-1]
 gi|218927749|ref|YP_002345624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis CO92]
 gi|229837056|ref|ZP_04457221.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|229840441|ref|ZP_04460600.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843017|ref|ZP_04463167.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900776|ref|ZP_04515900.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|270487854|ref|ZP_06204928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294502641|ref|YP_003566703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|30316092|sp|Q8ZIF1|MURD_YERPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595705|sp|Q1C212|MURD_YERPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595706|sp|Q1CMM9|MURD_YERPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21960600|gb|AAM87176.1|AE013965_3 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pestis KIM
           10]
 gi|45438232|gb|AAS63779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774232|gb|ABG16751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|108781452|gb|ABG15510.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Antiqua]
 gi|115346360|emb|CAL19232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CO92]
 gi|145212040|gb|ABP41447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Pestoides F]
 gi|149289820|gb|EDM39897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162352985|gb|ABX86933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Angola]
 gi|165914256|gb|EDR32872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919817|gb|EDR37118.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992421|gb|EDR44722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206960|gb|EDR51440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960055|gb|EDR56076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049314|gb|EDR60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054536|gb|EDR64344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229682115|gb|EEO78207.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|229689893|gb|EEO81952.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696807|gb|EEO86854.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705999|gb|EEO92008.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|262360671|gb|ACY57392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D106004]
 gi|262364618|gb|ACY61175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D182038]
 gi|270336358|gb|EFA47135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294353100|gb|ADE63441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|320016919|gb|ADW00491.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 438

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 124/326 (38%), Gaps = 48/326 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L   + +  +   + ++ +   F          ++   ++A+TG++GKS
Sbjct: 66  ADLIVVSPGMALAHPALSEAAEAGVEIIGDIELF--------CRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G S    G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMAKAAGWSVGGGGNIGVPALT--------------------LLKQDNQLTVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH D +    Q Y  AK+R++E         ++
Sbjct: 158 ELSSFQLE--TTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYEN----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R +S G      HL K      + ++ + V G+        
Sbjct: 212 NADDALTMPV----RGADSRCISFGVDVGDYHLNK-----QQGEIWLRVRGEKVLNTREM 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     NAL A  L  A+GI  A  L+ L     +P RF+ V        I    A 
Sbjct: 263 KLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQLVLERHGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC 390
              S E  L  ++    G + ++ G 
Sbjct: 323 NVGSTEAALDGLQ--VDGTLHLLLGG 346


>gi|327538738|gb|EGF25388.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodopirellula baltica WH47]
          Length = 660

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 139/444 (31%), Gaps = 53/444 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I QA+A+GA  I+             + +  P  +V +T + L+   S    +  + ++ 
Sbjct: 159 ISQALARGAAGILTEQ---------ILPAPIPQAIVADTDRALAEIRSNQTDRPDQKLIT 209

Query: 120 VT--GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSY 176
           +   G++GK+  +     + +             +  S   +       +   L  ALS 
Sbjct: 210 IGIVGSAGKTITSFLTASVLRDIPCRVAYQTDLGSSDSVVTEAGTAKVTNGASLIDALSD 269

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G      E  S  L     D I+L     T  GRD          +  + +    E
Sbjct: 270 AVDAGAAVSITEMDSAQLRLGAYDQIELDIVVVT--GRD-----MGGNDFGPSPIECAFE 322

Query: 237 LLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS 294
           L  +    I+   D  +       A +    V++ G   G  + ++ +          + 
Sbjct: 323 LAGQGGVLIVPESDQRAVSAAHTAAQSQNIEVVTYGVDNGADVSIRTISLEDGTLTAMLR 382

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----- 349
            E +       L           AA + +        + E L KL  +PGRFE +     
Sbjct: 383 HESRAAVMESFLGRGHFAECLAAAAAVGVVTENPLPQIAESLCKLRELPGRFEAITSGDW 442

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR------------------------TITSGRII 385
            T+     + +D   +   ++  L+  R                             ++ 
Sbjct: 443 ETDQNNPIVRLDIGGSPERVKFALQAARKELLQTPASTAPMTLPMHGSSSVNNTKRPKLW 502

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442
            V     + D       G++   + D  ++T  +    +   +   ++ GI         
Sbjct: 503 CVLSVSENDDAETLVQYGRLLESMPDHCVLTCADKDKANFLSMSHGVLDGIQDVAAMRLV 562

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +   AI+ A    +  D+++V G
Sbjct: 563 ADSSRAIQWAHAEASNNDMILVVG 586


>gi|330815491|ref|YP_004359196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Burkholderia gladioli BSR3]
 gi|327367884|gb|AEA59240.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Burkholderia gladioli BSR3]
          Length = 465

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 117/360 (32%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A       L 
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAIETQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +   + V+ R       V   G +G +  L     +   ++  + 
Sbjct: 209 RN-VPGIGRIVSNGRETALERVLAR--GCWSEVERFGVEGGWQALPAEDGVPVDERFAVY 265

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+   +  + + GE    NAL A     ++G+  A           V  R E  G + 
Sbjct: 266 WRGERMGEVEWTVQGEHNRQNALAAIAAARSVGVPPAQAARSFSAFRNVKRRMEIRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDL 409
            G  +Y D+AH   ++E  +  +R         +      R    +    K     +L  
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARVGREHTRILAVLEPRSNTMKLGTMKAQLPGSLAD 384

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           AD+          +      A+ +  +    +  + + A+  A+       D ++V   G
Sbjct: 385 ADLVFGYGAAAGRDALGWSLADALLPLGARAQAFDDLNALVKAVTAAARPGDQILVMSNG 444


>gi|148269826|ref|YP_001244286.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           petrophila RKU-1]
 gi|166224768|sp|A5IKI7|MURD_THEP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|147735370|gb|ABQ46710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           petrophila RKU-1]
          Length = 430

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 128/380 (33%), Gaps = 58/380 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P+ ++ +TGT GKS+  + +  +    G  SF  G   T +                   
Sbjct: 101 PKKVVGITGTDGKSTATALMHHVLSERGFKSFLGGNFGTPAV------------------ 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                     +  +E SS  L       +        N+  DH+D+H + + Y ++K++ 
Sbjct: 143 --EALEGEYDYYVLEMSSFQLFWSERPYLSNF--LVLNISEDHLDWHSSFEEYVDSKLKP 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L  E    +Y       E +K       R +                 +   +  +
Sbjct: 199 V--FLQTEGDLFVYN---KHIERLKDLEGVRSRKIPF-----------WTDENFATEKEL 242

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            V GK +      P +    N L  + L + +  +    LE L     +P R E++G   
Sbjct: 243 IVRGKRYTLPGNYPYQ-MRENVLAVSVLYMEMFNELESFLELLRDFKPLPHRMEYLG-QI 300

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G   Y D   T  S   +L  +        +V+  CG  + +     + K +  L  + 
Sbjct: 301 DGRHFYNDSKAT--STHAVLGALSNFDK---VVLIMCGIGKKENYSLFVEKASPKLKHLI 355

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +            +I  E+   +         N  EA   A+E+  K DV++++  G  +
Sbjct: 356 MF----------GEISKELAPFVGKIPHSIVENMEEAFEKAMEVSEKGDVILLS-PGGAS 404

Query: 472 VHIVTNGEKKMSVDCDIIRE 491
             +  N  K+     +I + 
Sbjct: 405 FDMYENYAKRGEHFREIFKR 424


>gi|254459232|ref|ZP_05072654.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1]
 gi|207084125|gb|EDZ61415.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1]
          Length = 481

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 127/353 (35%), Gaps = 42/353 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG+ GK+S+ +FV +I              +TI    +D   + PS   +     
Sbjct: 161 QIVAITGSYGKTSIKNFVTEILSTKYRVYSTPRSVNTIGGIMRDINESLPSDTEI----- 215

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y+   G       A   G        ++        +G  H++Y ++ +     K+ + +
Sbjct: 216 YICEAG-------ARESGDIYEITTFLEPQIVVVGKVGEAHLEYFKSLKNIIATKLEIMQ 268

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                ++       D               +V   G       ++ + A  +     + +
Sbjct: 269 SPRLMKAFIHSSVTDE-----------PHDKVTFFGDN-----IQNMDATIDGTNFELKL 312

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     + G FQ  N   A  +  + G+ ++ + + + KL  V  R + +     G
Sbjct: 313 GSDILTLHTNILGSFQTMNIEAAVNVAKSFGMSNSEITKAVAKLTPVEHRLQKIVA---G 369

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G+I +D  +  N ++ +L+ IR  ++  GR ++V     +        +     ++ DI 
Sbjct: 370 GKIILDDGYNGN-IDGMLEGIRLCSLHEGRKVIVTPGLVESSDELNLKLIDAINEVFDIV 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVA 465
           IVT     +   + I+      +       ++ + I+  +       D+++ A
Sbjct: 429 IVTGALNATLFEKNIK------VTNKTILHDKSK-IQDVLASQTKAGDIILFA 474


>gi|126696889|ref|YP_001091775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543932|gb|ABO18174.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 476

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 94/274 (34%), Gaps = 33/274 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + +TGT+GK++V   +  +   +GL +   G   T                 L K   
Sbjct: 119 NWIGITGTNGKTTVTHLLSHMLCDTGLYAPFAGNIGTP----------------LCKYAH 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + +  V  E SS+ ++      +K   G +T    DH++ H+T + YFN K  L  
Sbjct: 163 SKKHEKIDWVVAELSSYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSL-- 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L K    I   DD   +              S             C      Q  I  
Sbjct: 219 --LEKSDFRIYNYDDKNLRNHYTSLSRGVWITTSFDKSN-----LIHCDYWIDDQAYIVE 271

Query: 296 EGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            GK       F L G   + N L+       +G+    + + L     +P R E +  N+
Sbjct: 272 RGKKLFKLEHFSLKGMHNLQNLLLVIAAARKVGLSGKKIKDSLSNYKQLPHRMETIYKNN 331

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               I    A   +S    + +I     G+II++
Sbjct: 332 DLEIINDSKATNFDSSIAGISSIE----GQIIII 361


>gi|162449933|ref|YP_001612300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161160515|emb|CAN91820.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 456

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 146/411 (35%), Gaps = 57/411 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A+  GA+ +VVS          A  RS   ++            ASR      
Sbjct: 61  GHD---PALFDGADLVVVSPGVPSFPALDAVARSGREVIGE-------LELASRFV---S 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ V GT+GKS+  +    + +R+GL +F  G   T                     L
Sbjct: 108 APVVLVGGTNGKSTTTALTGAMLERAGLRTFVGGNFGT--------------------PL 147

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +  Q    + +E SS   +  R+  +   A +  N+  DH+D + +  AY +AK   F
Sbjct: 148 AEVVDQTWDVLVLEISSFQAE--RVPTLHARAHALLNITDDHLDRYASFAAYADAKGNPF 205

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E + P +   + + D    + V ++A     RV++   +       +         +   
Sbjct: 206 ERMTPDDVAVVPFGD----ELVARQAARGRARVVTFSARDA-----RADVSAAGGAIVDR 256

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V G  +      L G   + NA  +A L  A+G  +A + + L     +  R   V    
Sbjct: 257 VTGARYPLDRVRLAGAHNLANACASAALAAALGAPAAAIGDALSSFEGLAHRTALVA--D 314

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             G  Y D +  +N    +      + +    V+   G D+     P++  +      + 
Sbjct: 315 VDGVRYYDDSKGTNVGASVAALSGLLEAKA--VLIAGGRDKLGDYAPLVSALRERGRALV 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++        +     A    G+      G+  EA+  A  +    D +++
Sbjct: 373 VLG-------EAADRIAAAAAGVLPIARAGSMAEAVLAARSLARPGDAVLL 416


>gi|90415536|ref|ZP_01223470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2207]
 gi|90332859|gb|EAS48029.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2207]
          Length = 465

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 100/290 (34%), Gaps = 25/290 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +N+++V+GT GK++ +S V  I + +GL    +     I           P    L+  L
Sbjct: 103 QNVISVSGTHGKTTTSSMVAVILEYAGLEPGFL-----IGG--------VPLDFGLSARL 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMR 232
           S   S G   V  +         R   +   +      NL  DH D      A       
Sbjct: 150 S-AGSGGYFVVEADEYDSAFFDKRSKFVHYHSNTLIMNNLEFDHGDIFDDLAAIQRQFHH 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL------SVGYQGKFIHLKKVCAIH 286
           L    LP     I   DD   ++V+ +   +  +        S G+  K    K + A  
Sbjct: 209 LV-RTLPSTGHLIYPVDDHNLQQVVDQGCWSHIQTFAEAELGSKGWGSKGWGYKLLAADG 267

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           ++ ++ I    +     +   G   V NA+ A      +G+      E L +   V  R 
Sbjct: 268 SEFEI-IDQNNQSALISWQHSGRHNVLNAIAAVMAASTVGVSLDKACEALSQFVGVKRRM 326

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E +  + R   +Y D+AH   ++   ++ +R       ++          
Sbjct: 327 EVIYEDER-VTVYDDFAHHPTAIISTVQGLRAKVGNEQVIAIVEPRSATM 375


>gi|15607039|ref|NP_214421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
 gi|30315978|sp|O67852|MURD_AQUAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2984290|gb|AAC07814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
          Length = 415

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 126/360 (35%), Gaps = 52/360 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R        ++A+TGT GKS+       I ++     F+ G    I     +  L 
Sbjct: 76  ELAYRF---FKGKVIAITGTDGKSTTTRLTYLILKKFFDEVFEAG---NIGKPFSEVVLE 129

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P  I +                +E SS       L   +   G+F +   DH+D+H + 
Sbjct: 130 NPEGIAV----------------LEVSSFQG--KTLKTFRPNIGAFISFSVDHLDWHPSI 171

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  +K R+FE    ++        +    E+ K    A   + S  Y        K  
Sbjct: 172 EDYLKSKYRIFENQTEED----FLILNDLVYEIKKTPSRARKVLFSELYINSDSVFYKDI 227

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            + N + + I              G   VYNA VA+ + + +G+      E + +   +P
Sbjct: 228 RLFNPKNLKIR-------------GLHNVYNASVASLIALTLGLKPEDFEEVIYEFRGLP 274

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EF+G N  G  +Y D   T+     ++  ++T     +I++ G              
Sbjct: 275 HRLEFLG-NFNGVEVYNDSKSTTP--HALMHALKTFPDNSVILIVGGKDKGADFYSLRHI 331

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                   +AI        E  EKI  +    I          EA++ A E+    +V++
Sbjct: 332 VQKKVKIALAI-------GETKEKI-KDSWKDITEVKTCNTLEEAVKLAREVSKLGNVVL 383


>gi|291301477|ref|YP_003512755.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM
           44728]
 gi|290570697|gb|ADD43662.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM
           44728]
          Length = 473

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 131/381 (34%), Gaps = 51/381 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+ + GK     + V+GT GK++    +  +   +GL+   +         A D R  
Sbjct: 106 ALAAAMTGK---KSIVVSGTHGKTTTTGMITDMLAAAGLNPSFV----NGGESAADGRSG 158

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 L                 + S     ++R           TN+  DH++ + T 
Sbjct: 159 AHGSGELF------------VTEADESDRSFLRYR-----PFVSILTNIDVDHLNTYGTI 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKV 282
           +              P     I+ ADD  +  V KR    G  V+S G      + + ++
Sbjct: 202 EELVEGFAEFLRGTDP-SGSIIVCADDERAAAVGKRLAAEGRTVVSYGTDAEADLRIGEI 260

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               +  + T S  G+D   F   +PG     N+  A    + + +D   +   L     
Sbjct: 261 TIDASGARYTASYRGRDLGSFFVTVPGRHLALNSAAALLAGLLLDVDVEELRTGLAAFTG 320

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGC-GGDRDQGKR 399
           V  RFE  GT + G R+Y +YA+   ++   L  ++TI   GR+IVVF      R +  R
Sbjct: 321 VRRRFELTGTVA-GVRVYDEYAYHPTAMNAALSTLKTIAEPGRLIVVFQPYRVYRTRDLR 379

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-------------NRI 446
             + +         ++    P  E      A+   G P                   +  
Sbjct: 380 TEIAEALALADLAVVMEVFGPGEE-----LADDDGGRPLVEAIPLPPQAKRFVPQWSDVP 434

Query: 447 EAIRTAIEMLNKQDVLVVAGK 467
            A+R   E   + D +V  G 
Sbjct: 435 GAVR---EWAREGDTVVTMGA 452


>gi|34497121|ref|NP_901336.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|34102978|gb|AAQ59342.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 456

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 123/374 (32%), Gaps = 32/374 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A  +     + +LAV GT GK++ +S +  I + +GL+   +     I    ++  +
Sbjct: 93  QWLAENVLRD--KWVLAVAGTHGKTTTSSMLAWILEDAGLAPGFL-----IGGIPENFGV 145

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +   P   A   + +S   V       ++    + +    +       NL  DH D    
Sbjct: 146 SARLPGAPALDPASVSPFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFAD 205

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +       +P     +    +A    V+  A          G    +    ++
Sbjct: 206 LAAI-ETQFHHLVRTIPGNGRIVSNGREANLDRVL--ARGCWTPAERFGVDAGW----QL 258

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            A+H      + + G+      + L GE    NA+ A       G+     ++ L +   
Sbjct: 259 GALHEDGGFDVLLNGEQQGTVRWALMGEHNRLNAIAAIAAARHAGVAVKDAIDALSRFAN 318

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E  G    G  +Y D+AH   ++   L+ +R       I+              +
Sbjct: 319 VKRRMEVKGVAG-GVTVYDDFAHHPTAIATTLEGLRRKVGDARILAVLEPRSNTMKLGTM 377

Query: 402 MGKI--ALDLADIAIVTD----DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-E 454
              +  +L LAD    +      NP          E +  +    +  +  +A+  AI  
Sbjct: 378 KDALPGSLALADKVFCSAAGLNWNP---------GEALQVMGAKAQTFSDFDALLGAIAA 428

Query: 455 MLNKQDVLVVAGKG 468
                D ++V   G
Sbjct: 429 EAKPGDHVLVMSNG 442


>gi|289677696|ref|ZP_06498586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 302

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 95/292 (32%), Gaps = 24/292 (8%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + AS  G   + +   K      TN G  H+           AK  + E L      
Sbjct: 5   VIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGL-DAGGT 63

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDF 302
           A++  +D       KRA N      ++      ++  ++          T++        
Sbjct: 64  AVLNLEDKAFPIWRKRAGNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARV 123

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
              L G   V NAL AA    A+G+    ++  L  +  V GR       S G R+  D 
Sbjct: 124 QLNLLGTHNVSNALAAAAASCAMGVPLEGIVTGLNSVQPVKGRA-VAQIASNGTRVIDDT 182

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIAIVTDD 418
           Y     S+   +  +   T   ++V+   G   D   QG R +    A  ++ +  V   
Sbjct: 183 YNANPASINAAVDILTGFTGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAVGP- 241

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAG 466
                        + H +  F E      ++ E I       +    L++ G
Sbjct: 242 ------------LMTHAVSAFGEHAYHFASQAELIAALGAEQDPDTTLLIKG 281


>gi|326791416|ref|YP_004309237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542180|gb|ADZ84039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           lentocellum DSM 5427]
          Length = 457

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 150/429 (34%), Gaps = 46/429 (10%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLS-------LFASRLYGKHPENILAVTGTSGKS 127
                 D        +P + V    K L         FAS         I+A+TGT+GK+
Sbjct: 66  PDVKAFDLVVMSPGISPEIEVVQLAKQLGKKITGEFEFASWYCK---APIIAITGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V +I ++   S++ +G                       +A S    Q   +  V
Sbjct: 123 TTTTLVGEIMKKYNPSTYVVGNIG--------------------RAFSEEVLQIPENGIV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A          D       +  N+  DH++ H T + Y   K  +F+   P+E  +++ 
Sbjct: 163 VAEVSSFQLETADTFHPFISALLNITPDHLNRHHTMENYCACKYNIFKNQ-PEEGYSLLN 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D Y +E  K+      R +S   Q        V A    + V  +           + 
Sbjct: 222 TKDHYYEEAKKQVK---ARCMSFSLQEIPDCGAYVQADTLYENVHGTAHAICKIEDLHIK 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTS 366
           G   V NAL A  +  A G+   L+ E L     V  R E+V T  RG   + D  A  +
Sbjct: 279 GTHNVENALAAIAMAAAFGVPGNLIREVLTTFKGVEHRTEYVLTK-RGVDFFNDSKATNT 337

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++    L  + ++     ++    G D+    +  +      +  + I+       E  +
Sbjct: 338 DAAIAGLVGLSSLNKPIRLI--AGGMDKQTSFKDWIKHFNGLVEKVYII------GETKQ 389

Query: 427 KIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +I  E +  G           +AI+ A       + ++++     +  +  + EK+  + 
Sbjct: 390 QIVKECLEEGFTQVATFETLEDAIKAAYNESKANECILLS-PACASWDMFESYEKRGELF 448

Query: 486 CDIIREILG 494
            + + ++ G
Sbjct: 449 KETVMQLEG 457


>gi|288940819|ref|YP_003443059.1| UDP-N-acetylmuramate [Allochromatium vinosum DSM 180]
 gi|288896191|gb|ADC62027.1| UDP-N-acetylmuramate [Allochromatium vinosum DSM 180]
          Length = 455

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 114/361 (31%), Gaps = 34/361 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK++ AS +  + + +GL    +     I     D  ++           
Sbjct: 103 RWVLAVSGTHGKTTTASMLAWVLEDAGLDPGFL-----IGGVPLDFGVS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L S     V  +         R   +          NL  DH D              
Sbjct: 147 ARLGSAPFFVVEADEYDTAFFDKRSKFVHYGPRTLILNNLEFDHADIFDDLGQIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P     +  A       V+           + G +G +   +      +  +  
Sbjct: 207 LI-RTVPGSGLIVHPARVPAVDTVI--GLGCWTPRETFGAEGDW---RAELIEPDGSRFR 260

Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           + + G +   + +   G   V NAL         G+     +E L +   V  R E  G 
Sbjct: 261 VWLHGAEAGVVDWGQSGLHNVENALAVLAAARHAGVPVGAAVEALGRFQGVKRRLEVRGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
            + G R++ D+AH   ++   L  +R       RI+ V          G        +L 
Sbjct: 321 VA-GIRVFDDFAHHPTAIATTLDGLRRRVGAEQRILAVLEPRSNTMRLGTHNAELAGSLT 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGK 467
            AD   V   +    D     A ++ G+   +   + IE I    I      D ++V   
Sbjct: 380 AADRVYVHAPS----DLGWDAAAVLAGLGERLAVHDAIEPIVTQVIADSRPGDQILVMSN 435

Query: 468 G 468
           G
Sbjct: 436 G 436


>gi|171462985|ref|YP_001797098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192523|gb|ACB43484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 540

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 133/394 (33%), Gaps = 53/394 (13%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            LS  A      +   +LA+TGT+GK++ A+   Q+C+R+G      G    IS  A + 
Sbjct: 134 ALSRMAQAQESSYEAAVLAITGTNGKTTTAALTGQLCERAGKKVAVAG---NISPAALEK 190

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            +           +S           +E SS  L       +   A +  N+ +DH+D+H
Sbjct: 191 LMNCLDLADQIVDMS-------DVWVLELSSFQLV--YTHTLNATAATVLNITQDHLDWH 241

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGK 275
              QAY  AK R+F      ++  I+  DD+    ++         +++ G      QG 
Sbjct: 242 GDMQAYAEAKSRIFGA----DTVCILNRDDSLVMGLLSDEQKVDKSIVTFGSNRPDEQGA 297

Query: 276 FIHLKKVCAIHNKQQVTISV------------------EGKDFDFLFPLPG-------EF 310
           F     + A      V   V                  + +       +P          
Sbjct: 298 FGIEHDLRAGGIDWLVWAEVDEDVEPKSKRRRKSAVVEDDEPLRLKRLIPADALRIRGRH 357

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A  L  A+ +   ++L  L   H  P R + +        +         +  
Sbjct: 358 NALNALAALALARAVNLPMNVLLHGLRDYHGEPHRVQSIAIVRDVEYVDDSKGTNVGATV 417

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G+ I +   G  + Q   P+       +    ++       +D   I  
Sbjct: 418 AALNGLGNNELGKRIWLIAGGDGKGQDFSPLREPALRFVKGAFVI------GKDGVAIGE 471

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  GIP     G+ + A++         D++++
Sbjct: 472 ALGAGIP-ITNCGDLVSAVQAVAGQAISGDIVLL 504


>gi|293378750|ref|ZP_06624908.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
 gi|292642678|gb|EFF60830.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
          Length = 496

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 135/346 (39%), Gaps = 34/346 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV          +      TP  +V+++RKFL   +++L       ++A+TG++GK+S 
Sbjct: 81  VIVTEKPIMDPSVT------TPQFIVEDSRKFLLELSAKLRSCFVNPVVAITGSAGKTST 134

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSV 187
              +  + Q              +     ++ +    P+Y++K LS   + +  V+  ++
Sbjct: 135 RMMITHLLQE-----------EKVLENRGNHNVRFAVPLYMSKLLSNPDVLNLEVSVNAL 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            +   G   +    I+      T++G  H+   +  +     K ++FE L  ++  AII 
Sbjct: 184 NSYDTGSMSNL---IQQDIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGL-KQDGIAIIN 239

Query: 248 AD---DAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            D   + +S  V       +   V S+    + + +K++       +V +S  G+D    
Sbjct: 240 GDIGKEEFSILVSAAEKRTSKIVVYSLHDASRDVFVKQISQKREYCEVLVSFFGEDILLK 299

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVD 361
             +  E  + N+L A  +   +  + +  ++  E    +P   E     S  G    ++D
Sbjct: 300 LAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFTFID 359

Query: 362 YAHTSN--SLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             H ++  S++        I+    G  +++ G   D     + I 
Sbjct: 360 DTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIADLGDSTKQIH 405


>gi|254372509|ref|ZP_04987998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570236|gb|EDN35890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3549]
          Length = 417

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 138/356 (38%), Gaps = 60/356 (16%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AVTG++GKS+V +    + +  G  S  +G   T                
Sbjct: 91  YIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGT---------------- 134

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               AL+ +  +   +  VE SS  +D    + ++   G   N+  DH+D +Q  + Y  
Sbjct: 135 ---PALNKIGEK-FDYCVVEVSSFQIDLF--NCVRFDLGCIINVSPDHLDRYQNFEQYKQ 188

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K+ L +           +++D +  +V    HN G +     Y G++  ++     ++ 
Sbjct: 189 SKLNLAK-----------FSNDFFVYDV----HNNGIK-----YAGEYQIIRGAIYRNST 228

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + + I+           L GE  + N +V   +   +G+D    ++ ++K   +  R + 
Sbjct: 229 KLLDIA--------ETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKI 280

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V      G  Y++ +  +N +   +  + +IT+ + I++   G  +  G   +M K    
Sbjct: 281 V--KKVNGTTYINDSKGTN-VGATIAALNSITNSKNIILLLGGVAKG-GDFSLMIKSLDK 336

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +        D E I + I  G   +    N  +A   A +  N  +++++
Sbjct: 337 YVKYVYI-----YGADKEYIESYI-KGYCKYQLCNNMKQAFELASQKANSNEIVLL 386


>gi|206900214|ref|YP_002250973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
 gi|206739317|gb|ACI18375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
          Length = 456

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 113/281 (40%), Gaps = 16/281 (5%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SS  L+   ++  +     F N+  DH+D +     Y  AK R+F     KE  
Sbjct: 160 YFVLEISSFQLED--IEEFRPFISLFINIYPDHLDRYSNMDEYILAKARIFMNQ-KKEDY 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AI+  D    +E++K A +   R L  G+              NK    +S      +  
Sbjct: 217 AILNHD---QEEIVKLAKHYEVRKLFFGFNKHEEEGLFYEEDKNKIFYNLSDRRGFLNIP 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +     V N + +A + + +G+   ++ +  E+   +P   + +G  +  GRI+V+ +
Sbjct: 274 KGIWNRILVNNFMASALVGLLLGVREEVIEKTGEEFQGIPFALQKIGEIN--GRIFVNDS 331

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +N +   +  I++I     I++   G +++   + +   I        I+       E
Sbjct: 332 KATNPIS-TISAIKSI--NSPILLILGGRNKNFDFQELFENIKKTTVKALILI-----GE 383

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E ++         ++   +   A++ A EM    DV+++
Sbjct: 384 TKEVMKNLSEEYDIPYVLSDSLESAVKKAYEMSQPGDVILL 424


>gi|163746127|ref|ZP_02153486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
 gi|161380872|gb|EDQ05282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
          Length = 466

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 128/394 (32%), Gaps = 46/394 (11%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +  +      ++AVTG++GKS+ ++ +  I +  G      G                  
Sbjct: 112 AWDHYDVAPRVVAVTGSNGKSTTSALIHHILEHVGRPCQLAGNIG--------------- 156

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                  L    +     V +E SS+  +  R   +      FTNL  DH+D H     Y
Sbjct: 157 ----RGVLDLDPAVDGEVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHAGMGGY 210

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCA 284
           + AK RLF E  P  +   +  D+A  + +  +     +  RV+ +  + K         
Sbjct: 211 YAAKRRLFAEGGPDRAVIGV--DEAEGRFLAGQLSEGPSDDRVIRISAETKLSGPGWQVF 268

Query: 285 IHNKQQVTIS----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                         V   D   +  LPG     NA  A   C A+G+   ++        
Sbjct: 269 ARKGFLSEYRRGKQVGSIDLRSIQGLPGAHNHQNACAAYAACRALGLAPRVIEAAFHSFG 328

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +P R + V   +    +    A   +S    L   R I        + CGG   +G   
Sbjct: 329 GLPHRSQTVAEANGVRYVNDSKATNVDSAAKALAAFRNIR-------WICGGLEKEGGLK 381

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            + +    +    ++  +           AE+   +   + +               + D
Sbjct: 382 GLAEAQGSVRKAYVIGREAAHFAMQLTTEAEVCGTMEKAVARA---------AAEAEEGD 432

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           V+++A     +     N E++       +++ L 
Sbjct: 433 VVLLA-PAAASFDQYDNFERRGEDFVAQVQKALA 465


>gi|259047014|ref|ZP_05737415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
 gi|259036333|gb|EEW37588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
          Length = 452

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 136/414 (32%), Gaps = 54/414 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASRLYGK 112
           +A+G + +       L D         P +   N     +             A R+   
Sbjct: 53  VAEGVKVVSGGHPLELLDGDVDFVVKNPGIPYSNPLVAKAVDKGLPVYTEIEIAQRVME- 111

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +L +TG++GK++  +    +                  SF +       +      
Sbjct: 112 --GTVLGITGSNGKTTTTTLTNLMLHE---------------SFPERRTFACGNIGVPLS 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+  S +       E SS  L    ++  +       N+   H+DYH +++ Y  AK++
Sbjct: 155 QLAEDSKE-TDIYVTELSSFQLM--GIEAFRPKVACIVNIFSAHLDYHGSREEYVKAKLQ 211

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + +    +E   +  AD     E +K    A     S            +       + +
Sbjct: 212 ITKNQT-EEDFLVYNADFPELYEFIKGHTKATLVPFS--------RKSVLEHGAYTDETS 262

Query: 293 ISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           I   G+    +    +PG   V N L A  +C   G  +  + + +   H V  R ++V 
Sbjct: 263 IYFNGEAVMPIEAIQVPGVQNVENVLAAVAICKLQGATNEGIEKAVRSFHGVKHRTQYVK 322

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G + Y D   T+  +      +R+ T+   +V+   G DR  G   +   +     
Sbjct: 323 T-IEGRKFYNDSKATN--IIATQTALRSFTNQS-VVLIAGGLDRGNGFEELESSLGNVRE 378

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +          E  EK++A                EA+  A     + +++++
Sbjct: 379 MVVY-------GETKEKLKATAEKLSIPVTVVETLEEAVPKAYAASREGEIVLL 425


>gi|123967558|ref|YP_001008416.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           AS9601]
 gi|123197668|gb|ABM69309.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 449

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 114/370 (30%), Gaps = 50/370 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G+ GK+S ++F+  I +           T   SS          S  +L      +
Sbjct: 99  FAVAGSHGKTSTSTFLSTILELC---------TRNSSSITGGIIPIYNSNCHLENTKYLV 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +    +  ++               K   G   N+  DH D+         +    F   
Sbjct: 150 AEVDESDGTINKY------------KSDIGIINNIDFDHCDHFSNLSEVICS----FNSF 193

Query: 238 LPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  ++  D   S        +  N   + ++       I+ +     + +    I 
Sbjct: 194 AKNSKKLLLNFDCETSSNNFYSNFKWSNTTAKNVTYAIIPTEINARYTIGKYYENGNLI- 252

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     P+PG   + N   A      IG+D   + ++++ L +   RFEF G    
Sbjct: 253 -----GSLKIPIPGLHNLSNITAAIAASRMIGVDFIEIKKNIKYLKLPKKRFEFRGQIDE 307

Query: 355 GGRIYVDYAHTSNSLEMILKNIR---------TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              +Y DYAH  N ++  +K  R              R+I +F         +       
Sbjct: 308 -RSLYDDYAHHPNEIKETIKLGRLLIQQKHNNECQQRRLIAIFQPHRYSRVKQFTKEFAE 366

Query: 406 ALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            L  AD+  VT      E  E+      I   I           N  E  +   E+  K 
Sbjct: 367 ELSKADVIYVTSIYGAGEGNEEKITSKMITDLIYKKNENVSYINNYYEVTKNFYELTQKG 426

Query: 460 DVLVVAGKGH 469
           D+++  G G 
Sbjct: 427 DLILNMGAGD 436


>gi|145630232|ref|ZP_01786014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984513|gb|EDJ91936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 105

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +  S +  +     N P++      + LS  A     + 
Sbjct: 64  TELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFMIRP 102


>gi|89256891|ref|YP_514253.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115315270|ref|YP_763993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156503068|ref|YP_001429133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010673|ref|ZP_02275604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254368162|ref|ZP_04984182.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953242|ref|ZP_06557863.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313535|ref|ZP_06804126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|122063246|sp|Q2A1Z9|MURD_FRATH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122324734|sp|Q0BKM8|MURD_FRATO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224761|sp|A7NDX4|MURD_FRATF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89144722|emb|CAJ80053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115130169|gb|ABI83356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134253972|gb|EBA53066.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156253671|gb|ABU62177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 416

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 127/356 (35%), Gaps = 61/356 (17%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AVTG++GKS+V +    + +  G  S  +G   T                
Sbjct: 91  YIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGT---------------- 134

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               AL+ +  +   +  VE SS  +  +  + ++   G   N+  DH+D +Q  + Y  
Sbjct: 135 ---PALNKIGEK-FDYCVVEVSSFQI--NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQ 188

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K+ L                        K +++     +  G +    +     AI+  
Sbjct: 189 SKLNL-----------------------AKFSNDFFVYDVHNGIKYAGEYQIIRGAIYRN 225

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               + +          L GE  + N +V   +   +G+D    ++ ++K   +  R + 
Sbjct: 226 STKLLDI------VETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKI 279

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V      G  Y++ +  +N +   +  + +IT+ + I++   G  +  G   +M K    
Sbjct: 280 V--KKVNGTTYINDSKGTN-VGATIAALNSITNSKNIILLLGGVAKG-GDFSLMIKSLDK 335

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +        D E I + I  G   +    N  +A   A +  N  +++++
Sbjct: 336 YVKYVYI-----YGADKEYIESYI-KGYCKYQLCNNMKQAFELASQKANSNEIVLL 385


>gi|221632096|ref|YP_002521317.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
 gi|221157253|gb|ACM06380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
          Length = 469

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 112/306 (36%), Gaps = 26/306 (8%)

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            GLD+H   G+       T++  DH+D + + +AY +AK  +     P +    +  DD 
Sbjct: 178 EGLDEH---GLSPHIAVLTSISPDHLDRYPSFEAYIDAKRAIARHQRPGDWFV-VNRDDP 233

Query: 252 YSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306
               V     +AGC +V+  G            A     ++     G++ D L    FPL
Sbjct: 234 ----VAWACRDAGCGKVVPFGRDDGVSD----GAFWRDDRLIWRWGGEEQDLLRRSDFPL 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE  V NAL AA   +  G   A V   L +   VP R E V   +R G +  D+ + S
Sbjct: 286 MGEHAVGNALAAAAAALLRGASPAHVAAALREAEPVPHRLEHV---ARLGTV--DFVNDS 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +           T     +V   GG         + +         ++ D    +  P+
Sbjct: 341 AATAPAAVLAALATFRERPIVLIGGGAAKGVSLAELAEAVARQVRAVVLLD---GTATPD 397

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
              A    G        +  EA+R A E+      +V+   G  +  +  +   +     
Sbjct: 398 YQAALRAAGARVEGPYQSMEEAVRRAAELAEPG-AVVLLSPGCASFGLFRDEFHRGESFR 456

Query: 487 DIIREI 492
           + +R++
Sbjct: 457 EAVRQL 462


>gi|322378887|ref|ZP_08053304.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
 gi|322380387|ref|ZP_08054593.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321147177|gb|EFX41871.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321148697|gb|EFX43180.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
          Length = 464

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 131/353 (37%), Gaps = 37/353 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG+ GK+SV +++ QI Q        +   +T+   +QD          L     
Sbjct: 139 QIIAITGSFGKTSVKNYLYQILQGKFTIYSSLNSVNTLLGLSQDINQNLDETSTL----- 193

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G        +   L +H            T +G  HI+Y +   + +  K  L +
Sbjct: 194 YIAEAGARQKGDIKAIGSLLEH-------HYAIITEIGNQHIEYFKDIDSIYETKAELLQ 246

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              P+   A  Y  +       +             Y G+  H     A        + +
Sbjct: 247 S--PRLIQAFCYDKNPLEPFYTELTDKIKL------YPGQIRHA---NATLEGTSFELFL 295

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + +   F   + G F V N  +A  +     I    +   + KL+ VP R   +  N + 
Sbjct: 296 DNQWVAFETKILGAFNVDNIALAVLMGHYFDISIPQLQRLVAKLNPVPHRLHPLHINDK- 354

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +D     N L+ +L+++R  ++  GR I+V     + D      + K    + DIA
Sbjct: 355 --FIIDDGFNGN-LKGMLESVRLASLYMGRRIIVTPGLVESDVESNTTLAKAIDSVFDIA 411

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T      E    + A+ +      F++   ++E I   I +    D+++ A
Sbjct: 412 IIT-----GELNVSVFAQNLQRPQRVFLKDKGQLEQILQTITLAK--DLILFA 457


>gi|307332564|ref|ZP_07611614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881785|gb|EFN12921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 483

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 139/414 (33%), Gaps = 55/414 (13%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +G E IV +  +      F A   +N PI    +        A RL G+     LAVTGT
Sbjct: 76  KGTELIVTTPGWKPTSPLFLAAAEANVPIW--GDV-----ELAWRLRGEDAPPWLAVTGT 128

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  I + +GL +  +G                        +L  +      
Sbjct: 129 NGKTTTVRMLAAILEAAGLRTAAVGNIGV--------------------SLLDIVLGDEP 168

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +         H    ++  +G+  NL  DH+D+H +  AY   K R++E    + + 
Sbjct: 169 YDVLAVELSSYQLHWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYEG--NQVAC 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
               AD A    V       GCR +             V       +  ++   K    L
Sbjct: 227 VYNVADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFVADRQKQAQEL 286

Query: 304 -----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   P    + NAL AA L  A G+    V + L      P R E V      G  
Sbjct: 287 AEVSDVNPPAPHNIANALAAAALARAFGVPPKAVRDGLRAFRPDPHRVEHVA--DVDGVA 344

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y+D +  +N+          + +   IV    G  +      ++   A  L  + ++  D
Sbjct: 345 YIDDSKATNTHAAEAS----LGAYEHIVWIAGGLAKGATFDELVLTAAERLRGVVLIGAD 400

Query: 419 NPRSEDPEKIRAEIIHGIPGF-IEKGNRIE------AIRTAIEMLNKQDVLVVA 465
                    IR  +        +   +R +      A+R A  +    D +++A
Sbjct: 401 R------ALIREALARHAADVPVVDLDRTDTGAMAAAVREAARLARPGDTVLMA 448


>gi|12655906|gb|AAK00649.1|AF227236_1 FolC-FolP fusion protein [Halobacterium salinarum]
          Length = 816

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 80/405 (19%), Positives = 137/405 (33%), Gaps = 51/405 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-------------- 141
           ++T   L+              +A  G++GK S A F + I + +G              
Sbjct: 23  ESTADLLASLGDPHQDGPDYVQIA--GSNGKGSTARFTESILRAAGLDVGLYTSPHFDDV 80

Query: 142 -----------LSSFQIGPTSTISSFAQDNRLTTPSPIYLA----KALSYLSSQGVTHVS 186
                        +       TI+ +  +      +P Y       AL   S   V    
Sbjct: 81  RERVTVNGRRMSKAALTTFIETITPYVTERAADGAAPTYFEVVTAMALWQFSRADVDVAV 140

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E    G        +   A + T++  +H D             R    + P     ++
Sbjct: 141 LEVGI-GGRLDATSVVDPSASAVTSVTLEHTDVLG---ETIPEIARDKAHVAPAGDTPLV 196

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A    + + +    +    V +VG               N  +  +S+ G D+     +
Sbjct: 197 TA---TTDDALAAVRDHAGAVRTVGDTAGRDVTATYEGRTNHTEAAVSITGDDWSVATEI 253

Query: 307 P--GEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           P  G+ Q  NA VAA L     G+D   +   L   H   GRFE +G +     + +D A
Sbjct: 254 PLLGDHQAENAGVAAALARQTAGVDDDAIARGLRSAHWP-GRFEVMGAD---PVVVLDGA 309

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RS 422
           H   +   + + +      R++ VFG   D+D G        AL   D     +  P R+
Sbjct: 310 HNPGACGAVAETVAEFDYDRLLTVFGAMHDKDHGAM----AAALPTPDHVWACEPVPDRA 365

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAG 466
           ED + + A       G +     +E A+  AI      D+++VAG
Sbjct: 366 EDADVLAAVFEDAGAGTVSVTRAVESAVADAIAEATADDLVLVAG 410


>gi|254449012|ref|ZP_05062466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
 gi|198261406|gb|EDY85697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
          Length = 447

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 72/352 (20%), Positives = 131/352 (37%), Gaps = 48/352 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++GKS+V   V  + Q +G++    G   T                    AL
Sbjct: 110 APLIAITGSNGKSTVTELVGSMAQSAGMTVAIGGNLGT-------------------PAL 150

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L+   V    +E SS  L+   +  ++  A +  N+  DH+D + + +AY  AK    
Sbjct: 151 EILAPA-VDLYVLELSSFQLE--TVQSLRPKAATVLNISEDHMDRYSSIEAYAAAKAAAI 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                    A+I   D   K V     +                L+++        V ++
Sbjct: 208 SH----SEVAVINRQD---KRVAAMLSDGERVTFGSDSSEAGYGLERL-----AGTVWLT 255

Query: 295 VEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G+    +  L   GE    NAL A  L  A GI     L  L++   +P R E+V   
Sbjct: 256 AQGERLIEVSDLKICGEHNWLNALAALALADAAGIAREASLAALKEFAGLPHRTEWVAE- 314

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            R G IY++ +  +N +      +        +V+   G  + Q   P+   +      +
Sbjct: 315 -RNGVIYINDSKATN-VGATAAAVTGFDQP--LVLIAGGVGKGQDFAPLKTSLKARAKAV 370

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D E I   +   +  +    +  EA+  A E+    DV+++
Sbjct: 371 VLL------GHDAELIGQALGDEVAQY-RVASMSEAVSRATELAECGDVVLL 415


>gi|254428904|ref|ZP_05042611.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Alcanivorax sp. DG881]
 gi|196195073|gb|EDX90032.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Alcanivorax sp. DG881]
          Length = 450

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 97/305 (31%), Gaps = 24/305 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK++ +S +  I + +GL+   +     +      +     +P ++ +
Sbjct: 101 PGRWVLAVSGTHGKTTTSSMLAWILEYAGLNPGYL--IGGVPGNFGVSARLGETPFFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y ++                       +       NL  DH D      A    +  
Sbjct: 159 ADEYDTAFFDKRSKFVHY------------RPRTVILNNLEFDHADIFADLAAI-QTQFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P     I+     + +  ++   + GC    V   G+   L       +    T
Sbjct: 206 HLIRTVPSTGRLIL----PHGETALEETLDRGCWS-EVERFGEDEALGYRLDQDDGSVFT 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G+      +   G   V N + A      +G+  A     L +   V  R E  G 
Sbjct: 261 VLGNGQPVAQVHWDQTGRHSVNNGMAALLAARHVGVTLADGAAALSEFVGVKRRMELRGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--L 409
            + G R+Y D+AH   ++   L  +R       I+                  +A     
Sbjct: 321 VA-GVRVYDDFAHHPTAIATTLDGLRRKVGDGKILAIIEPRSNTMRLGNHKAALAGSTGC 379

Query: 410 ADIAI 414
           AD  I
Sbjct: 380 ADEVI 384


>gi|56684727|gb|AAW22050.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori]
          Length = 493

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 141/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S   F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKKFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDKSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++ V        +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDVS-----SLVKNIQSTLKGTSFEMLL 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + GEF  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 DSVWERFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +     ++ +    + D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLHKGRKVIVTPGLVESNTESNEVLAQKIDGVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASKLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|58697604|ref|ZP_00372812.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58535891|gb|EAL59670.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 250

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 112/277 (40%), Gaps = 37/277 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AV+G+SGK++  + +  I   S + +  I     ++S+  ++R        L K+  +
Sbjct: 1   MIAVSGSSGKTTTTAMIASIFDHSNIDATVI-VGGILNSYQSNSR--------LGKSDIF 51

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L     +  ++              I       T++  DH+D++ T     +A    F +
Sbjct: 52  LIEADESDGTML------------KIPANITVITSINDDHMDHYGTFDDIKHA----FSQ 95

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            + K   AI+      S  +   A N+       G++   I    +    N  +  + ++
Sbjct: 96  FINKADFAIL----PDSVGINYDASNSMM----FGFESGNIRASNIKQHANSIEFDVLID 147

Query: 297 GKDFDFLFPL---PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    L    G  +V NAL A  + I +GI  A + + L +   V  RF  +  + 
Sbjct: 148 NNHRIKNVVLSNTIGMHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLI-ADI 206

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           +G ++  DYAH  N +   L   R+IT G++I +   
Sbjct: 207 KGVKLIEDYAHHPNEIYATLTAARSITKGKVIGIIEP 243


>gi|206602134|gb|EDZ38616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 487

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 150/439 (34%), Gaps = 53/439 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS     + ++       P+ +    R  +         +    ++AV GT+GKS+ +
Sbjct: 79  VIVSPGVPTRKWAGQ---EAPLYI----RNVMGEM-EWASLRTSVPLVAVGGTNGKSTTS 130

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +    + +G   F  G   T  S    +     SP+              T   VE S
Sbjct: 131 ALLAHFLEAAGERVFLGGNFGTPLSEMVLSEREGSSPLP-------------TVAVVELS 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S   +   +   + +     N+  DH+D + +   Y  AK   F + + K+S  ++  D 
Sbjct: 178 SFQAETMGV--FRPVVNLLLNITPDHLDRYLSVDHYRRAKWNAF-QTMEKDSFTVLNRDP 234

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE- 309
           A    V         R+       +    +    I     ++ +++G +         + 
Sbjct: 235 ACG--VYPPFSPISSRLAWFYGSKEPCPDRTGGLILEGDPLSATLDGIEGLPPISWNLKN 292

Query: 310 ------FQVYNALVAAGLCI----AIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRG 355
                     N   A    +    A G         LEK       +P R E VG   +G
Sbjct: 293 FPLEGMGNRQNLAAALLGAVLYLQATGKHPEQATTALEKAAASFRGLPHRMEVVG-EWKG 351

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAI 414
            R   D   T+  ++     +        IV +   G D+     P+   I   +  IA+
Sbjct: 352 IRFINDSKATN--VDATRLALEGYAGHSPIVHLILGGRDKGAPYAPLREGIRTSVKSIAV 409

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +       E  EKIR E+   +P      +  EA+  A    ++ D ++++     +  +
Sbjct: 410 L------GEAREKIREELGSLVP-MTLCESLEEAVDVAAGQASEGDRVLLSPACS-SYDM 461

Query: 475 VTNGEKKMSVDCDIIREIL 493
               E++ SV   I+   +
Sbjct: 462 FHGYEERGSVFRSIVENWI 480


>gi|145635583|ref|ZP_01791281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|145267145|gb|EDK07151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 105

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +  S +  +     N P++      + LS  A     + 
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFMIRP 102


>gi|289625653|ref|ZP_06458607.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647292|ref|ZP_06478635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330865952|gb|EGH00661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 449

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 133/410 (32%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNALSRGNPAVEYVLNKGLPYVSGP----QWLADHVLQD--RWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGDTPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I  A
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPA 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIEM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGQLQGCVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  +L ++ L     V  R E V    RG  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPSLGVQALSAFKSVKRRMEKV-AEVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R  I    II V     +  + G        ++  AD  +      +  D 
Sbjct: 336 AIATTLDGLRKKIGDAPIIAVIEPRSNSMKLGAHRDGLPESVSQADQVVWYAPPNLGWD- 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     A  + G        + +EA I            +V+   G
Sbjct: 395 ---------LAATVAGGSVPSTVCDSLEAIIARVHSQARPGTHIVIMSNG 435


>gi|221194801|ref|ZP_03567858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium rimae
           ATCC 49626]
 gi|221185705|gb|EEE18095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium rimae
           ATCC 49626]
          Length = 472

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 137/384 (35%), Gaps = 42/384 (10%)

Query: 95  VDNTRKFLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           V +T       A+            + + PE  +A+TGT+GK++  + V +I Q +G  +
Sbjct: 83  VPDTSALFLSAAAHSQEIIGEPEFAFRESPEKWIAITGTNGKTTTTTLVTKILQTAGQKA 142

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             +G      +   +    TP   ++A+                 SS  L    +  +  
Sbjct: 143 ISVGNIGR--TITDELSSRTPDEWFVAEL----------------SSFQLA--TIARLHP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +  N+  DH+++H T  AY  AK R+FE     +  A++   D Y +   +R     
Sbjct: 183 KTAALLNITPDHLEWHGTLAAYAAAKERIFENFDIHD-LAVVSDLDEYCRACAQRLEARH 241

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAG 320
            RV  +  +       +  A      + +   GK+ + +      + G     NAL A+ 
Sbjct: 242 IRVCHLNTEDP---KTEHAAFIRDGVLVVRRSGKETELIRAADLKIHGLHNALNALAASA 298

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +  G+D   V   L     +  R E V   S    +    A  ++++E  L    T  
Sbjct: 299 LALEAGVDPVSVRHALLDFEALEHRIEPVREVSGVLYVNDSKATNTDAVEKSLTAFPT-- 356

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
             R +V+   G D+      +   +              PR  +  ++     H     +
Sbjct: 357 --RGVVLLLGGHDKGTDLGSLAAAVNRSCKTAICYGAAGPRIAEALEVEKTKQHSDLHVV 414

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
              +  EA   A +     DV+++
Sbjct: 415 SAPHMKEAFEAATKRAMAGDVVLL 438


>gi|67906497|gb|AAY82604.1| predicted UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [uncultured bacterium
           MedeBAC35C06]
          Length = 434

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 103/274 (37%), Gaps = 30/274 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           EN++AVTGT GK++ +  +  I   +G+    +     IS   QD+     + I++ +  
Sbjct: 101 ENLIAVTGTHGKTTTSYMLCHIFIENGIDIGYL--VGGISPHFQDSAKIGTANIFIIEGD 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            Y                 L   R   I     +    N+  DH D  +           
Sbjct: 159 EY--------------DSALFDKRSKFINYNPHSIIINNIEFDHADIFRDIDDIKRQFHH 204

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L + ++P +   + + DD   K+V+     +  ++L +G +  F   +      NK   +
Sbjct: 205 LVK-IIPNDGSIMYHHDDPNIKDVINL--GSWSKMLPIGEEDLFYSYENREMTFNKINYS 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++          PL G     N + A  +    G+     ++ L     V  R E V   
Sbjct: 262 LTA--------LPLKGIHNFKNYVAAIYMAYQYGVPIKKSIQALSNFSGVKRRQELVYDK 313

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    I  D+AH   ++++ +++I+     + I+
Sbjct: 314 NN-ISIIDDFAHHPTAIKLTIESIKHENPKKNII 346


>gi|302338785|ref|YP_003803991.1| UDP-N-acetylmuramate/alanine ligase [Spirochaeta smaragdinae DSM
           11293]
 gi|301635970|gb|ADK81397.1| UDP-N-acetylmuramate/alanine ligase [Spirochaeta smaragdinae DSM
           11293]
          Length = 486

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 134/418 (32%), Gaps = 45/418 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++ S+AY  +     + +    + V +  + L   +  +          + G+ GK+
Sbjct: 79  AAGLIYSAAYDPEKHPEILAAFGQGIPVLSYTQALGSISETV------PFAGIAGSHGKT 132

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + ++    +  R+      +   S + +F   +        ++A+   Y           
Sbjct: 133 TTSAL-AGVMARAAALPAFVLAGSAVPAFGGGSIFFGGDSFFIAETCEY----------- 180

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
               H L  +            T++  DH+DY +      +A +  +   L K    I  
Sbjct: 181 --RRHFLSFY------PQWIVLTSVEADHLDYFRDIDDIMSAFVE-YALRLSKGGVLIYC 231

Query: 248 ADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            DD  + EV +R  A     R++  G      +     ++ +++    +V   D +F   
Sbjct: 232 HDDEGACEVARRLSAIREDVRLVPYGISAPGDYRMTGRSVRDERN-RFTVACIDGEFSLR 290

Query: 306 LPGEFQVYNALVAAGLCIAIG-------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +PGE    +AL A  L   +             V   LE       R E +G    G   
Sbjct: 291 IPGEHIAKDALAAFALIREMSDRESFDTYGMESVRRELEGFSGSKRRSEILGEAG-GVLF 349

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             DY H    +   L   R     R IV+ F                 A   AD  I+ +
Sbjct: 350 LDDYGHHPTEIRRTLAGFREFYPERRIVIDFMSHTYSRTEALLDQFAEAFTDADEVILHE 409

Query: 418 DNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               +       D   +   +           + ++A     + L + D+ V  G G+
Sbjct: 410 IYASAREKKGNVDGRSLFDRVKQHSSAVRYYDHPLDAFEPLSQSLRQGDLFVTMGAGN 467


>gi|251788248|ref|YP_003002969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya zeae
           Ech1591]
 gi|247536869|gb|ACT05490.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya zeae
           Ech1591]
          Length = 437

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 141/401 (35%), Gaps = 60/401 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S   +L        +   I ++ +   F          +    I+A+TG++GKS
Sbjct: 65  ADLIIASPGIALATPVLCDAAAAGIEIIGDIELF--------CREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G +    G     +                      L  Q      +
Sbjct: 117 TVTTLVGEMARAAGWAVGVGGNIGVPA--------------------LELLKQESQLYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH + +    Q Y  AK+R++E         I+
Sbjct: 157 ELSSFQLE--TTYSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYEN----AKVCIV 210

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            ADDA +  V      A  R LS G      HL +      + +  + V+G+        
Sbjct: 211 NADDALTMPV----RGADDRCLSFGVDVGDYHLNR-----QQGETWLRVKGERVLNTREI 261

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    NAL A  L  A+GI  +  L  L     +P RF+     +    +    A 
Sbjct: 262 KLVGQHNYTNALAALALADAVGIPRSSALIALTTFTGLPHRFQLALERNGVRWVNDSKAT 321

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P++  +  D   +     D      
Sbjct: 322 NVGSTEAALSGL--HVDGMLHLLL-GGDGKSADFSPLLRYLQGDRIRLYCFGRDG----- 373

Query: 425 PEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
                 ++    P   E+ +   +A+      +   D++++
Sbjct: 374 -----GQLAALRPDIAERTDTMEQAMTLIAGRIQPGDMVLL 409


>gi|228933512|ref|ZP_04096365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826241|gb|EEM72021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 270

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 111/277 (40%), Gaps = 18/277 (6%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G+ H++   +++    AK+ + + L  +    +   D+     + +    +     
Sbjct: 2   ITMIGQSHLETLGSRKEIAKAKLEIIDGL-RENGLFLYNGDEPL---LSRNNKTSSVNCK 57

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +     L       ++  V   +      +  PL G+  ++N +V   +     + 
Sbjct: 58  TFG-EKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFYKVP 116

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIV 386
           +  + E L+++++   RF+F+ T   G  I  D +  + +S++  ++ ++ +    + I+
Sbjct: 117 TEKIQEALQQINITQMRFQFL-TAKIGFTIINDAWNASPSSMKAAIETLQKLNAYKKKII 175

Query: 387 VFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIE 441
           V G   +   + +     +GK+  +     + T      E  + +  E      I     
Sbjct: 176 VIGDMLELGKKAETYHREIGKMLNEENIQYVFT----YGELAKFVAEEARKNYHIGKVQS 231

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVTN 477
             N+ E     ++++ K+DV+++ G +G     IV  
Sbjct: 232 FDNKAEIAEEVLKVITKKDVVLLKGSRGIALEQIVQK 268


>gi|94269090|ref|ZP_01291365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93451350|gb|EAT02218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 132/409 (32%), Gaps = 82/409 (20%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           DGH   P+  A   +AIVVS    L         R+  PI+            A      
Sbjct: 70  DGHS--PELFAA-VDAIVVSPGVPLDIPALKEAARAGVPII---------GELALAPAYL 117

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AVTGT+GKS+V + + ++ Q +G  +F  G                P   YL  
Sbjct: 118 HT-PVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGGNLGV------------PLAQYL-- 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  Q    V +E SS  LD       +   G   N+  DH+D +   QAY  +K R
Sbjct: 163 ----AGPQEADWVVLEVSSFQLDTA--GAFRPQIGVLLNISPDHLDRYPDYQAYAASKWR 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNK 288
           LF      +  A++   D     +   A     R L    Q    G+   +     +   
Sbjct: 217 LFAHQRATD-WAVLNGADPEIARLAVAAPPV-ARRLDFNCQPQPEGRATAIDDEITMTGG 274

Query: 289 QQVTISVEGKDFDFLFP------------------------------------LPGEFQV 312
                +  G                                            L  E  +
Sbjct: 275 AWSASTPAGARLLVNVYSLLKQPVTGPGERLPLPTPAAGADPIPPEVYEPGPELAVEPNL 334

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA  A       G  S+ V+  L     +P R   V + +  G  Y D +  +N +  +
Sbjct: 335 QNAQAAILAARLAGCSSSAVVAGLRAFKSLPHRLALVASIA--GVDYYDDSKATN-IGAV 391

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  ++ +     +++   G D+    + ++  +   +  + ++     R
Sbjct: 392 VSALQGLAQP--VILIAGGLDKGGDYKLLLPVLKEKVRAVVLIGSARAR 438


>gi|21232719|ref|NP_638636.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767206|ref|YP_241968.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114532|gb|AAM42560.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572538|gb|AAY47948.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 452

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 139/406 (34%), Gaps = 31/406 (7%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127
           A + + A  +   +A  R N  +  V +  +  S  A  L  +     + LAV GT GK+
Sbjct: 57  ANISADAQDVVIGNALSRGNAAVEAVLDAGRRYSSGAQWLAEQVLPGRDTLAVAGTHGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  + + +G +   +     I   A+D          L +   ++        + 
Sbjct: 117 TTTTILSYLLEAAGRAPGFL-----IGGVAED----FGVSARLGQGREFVVEADEYDTAF 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                    +R      +     NL  DH D      A       L    +P     I+ 
Sbjct: 168 FDKRSKFVHYR-----PLVAILNNLEYDHADIFPDVAAIQRQFHHLV-RTVPARGRLIVN 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +DA   EV+  A      V   G+        ++ A    +   +    +     +PL 
Sbjct: 222 GEDARLAEVL--AMGCWTPVERFGFDPALDWSAQLLADDGSRFAVLHRGEEIGQVQWPLL 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L A     A+G+D   V+  L +   V  R E +G  ++G  +Y D+AH   
Sbjct: 280 GRHNVLNGLAALAAVQAVGVDPVTVMPALARFQSVKRRLEVLG-QAQGITVYDDFAHHPT 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSE-- 423
           ++   L+ +R       ++V                 +A  L  AD  +      R E  
Sbjct: 339 AIATTLQGLRAKVGTARVLVAMEPRSNSMRLGAHAQALAPSLHDADAVVFL---HRPELA 395

Query: 424 -DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D   I A++  G     +  + +  +R   E+    D +V    G
Sbjct: 396 WDAAPIIAQV-RGQAHVAQDVDTL--LRMLGEIAQPGDHVVFMSNG 438


>gi|332982161|ref|YP_004463602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mahella
           australiensis 50-1 BON]
 gi|332699839|gb|AEE96780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mahella
           australiensis 50-1 BON]
          Length = 452

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 129/363 (35%), Gaps = 39/363 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEAS 190
               I + +G+++F  G                         +S +   G    V  E S
Sbjct: 125 LTGHIFKLAGVNTFVCGNIG-------------------MPMISAIEQYGPGDVVVAEIS 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+  R    K    +  N+  DH++ H T   Y   K R+F    P +   ++  D+
Sbjct: 166 SFQLESIR--YFKPHVSAILNITEDHLNRHGTFDNYIAIKSRIFMNQGPDD-YVVLNMDN 222

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +++++        VL    + +      V   +   ++    +         +PG+ 
Sbjct: 223 EPCRQLIEL---PNAHVLPFSRKQELDEGAMVKDNYIICRLNSREDKICRVNDIKIPGKH 279

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NAL +A +  A+GI   ++ + L     V  R EFV        I        ++  
Sbjct: 280 NLENALASAAIAYAMGIGPDVIAQGLRTFEGVEHRIEFVDEIDGVRFINDSKGTNPDAAV 339

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             ++ +     G II++   G D+       +      +  + ++       E  ++I +
Sbjct: 340 KAIEAV----DGPIILI-AGGMDKHADFTGFIEAFDSKVKALVLL------GETADQIAS 388

Query: 431 EIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                G     +  +  EA+  A  + +  D ++++     +  +  N E++  V  + +
Sbjct: 389 AARRMGFDNIYKVHSLQEAVEQAWHLSSAGDCILLS-PACASWDMFDNFEQRGMVFKEAV 447

Query: 490 REI 492
           R++
Sbjct: 448 RKL 450


>gi|148240320|ref|YP_001225707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7803]
 gi|147848859|emb|CAK24410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 7803]
          Length = 463

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 138/401 (34%), Gaps = 42/401 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V+S   +    +        +      R  +S+    L G      + +TGT+GK+
Sbjct: 70  ASEVVISPGIAWDHPTLNALRAQGL----RVRGEMSVAWDALSGIP---WIGITGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   +Q +   +GL +   G                 S   LA  +   +      V +
Sbjct: 123 TVTHLLQHVLAHAGLEAPMAGNVG-------------HSAAELALEVLQGTRPKPDWVVM 169

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ ++      +    G +T L  DH++ H T  AY   K      LL +    ++ 
Sbjct: 170 EMSSYQIEAA--GEVSPRIGIWTTLTPDHLERHGTLAAYRAIK----RGLLERAETPVLN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA  ++        G R +S    G         +++ +  V+            PLP
Sbjct: 224 ADDADIRQHCGAWSRPGLRWVSGADDGPDKDSIHRISVNAQGWVSQGERPLFPADALPLP 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N L+A    +   + ++ +   L     VP R E +G+           A   +
Sbjct: 284 GDHNRQNMLLATAAALEASVSASSIEAALRCFTGVPHRLEPLGSVGGIPVFNDSKATNYD 343

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  + L++++        VV   GG   QG      ++        ++           +
Sbjct: 344 AAAVGLRSVQA------PVVLLAGGQTKQGDADPWLELLQSQVCGVVL-----FGAGAGE 392

Query: 428 IRAEII-HGIPG-FIEKGNRIEAIRTAIEMLN---KQDVLV 463
           +   I   G  G  +   +   A+  A+ +        VL+
Sbjct: 393 LADLIETAGFSGPVMHHADLNAAVPQALSLAKDFEAGSVLL 433


>gi|110800658|ref|YP_696598.1| FolC bifunctional protein [Clostridium perfringens ATCC 13124]
 gi|110675305|gb|ABG84292.1| FolC bifunctional protein [Clostridium perfringens ATCC 13124]
          Length = 441

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 140/386 (36%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +G                   I+    D        
Sbjct: 41  KFIHIGGTNGKGSTTAMISSVLKEAGFKVGMYTSPYLEEFEERIQINGENIDKDDLAVLM 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLDG---IKLIA 206
             + KA+  +   G    +       L  +                  RLD    +    
Sbjct: 101 GDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGGRLDATNVVLPEV 160

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    T +     K  + +  +P     I Y  +  + EV+K   N   
Sbjct: 161 VVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVP----VISYPQEEKALEVIKERCNELG 216

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L V    + I    +    + Q++ +S+E +       L G+ QV N LVA    I +
Sbjct: 217 CNLEV-VNTEDIRNIIIDKEKHIQKIEVSLEDEILKIDLGLLGDHQVKNFLVALKTLIKL 275

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                 I +  + E  +K+  + GR E +  N     + +D AH  + +  +  +I    
Sbjct: 276 RNNGVNISNEAIKEGFKKVRWI-GRMEVLNEN---PLVVIDGAHNIDGIRNLRNSIDKYF 331

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + I +   G   D+    ++ +I   +  + IV   + R+ED E +  ++   +    
Sbjct: 332 NFKNITLIL-GVLGDKQVDEMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVF 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  EA   A  + N+ D+L++ G
Sbjct: 391 KFKDYKEAYNKAYSLTNEDDLLLICG 416


>gi|148259082|ref|YP_001233209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           cryptum JF-5]
 gi|146400763|gb|ABQ29290.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           cryptum JF-5]
          Length = 461

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 128/378 (33%), Gaps = 46/378 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                + +A +    PI           LF +          + +TGT+GKS+  + +  
Sbjct: 83  PVPHPEAAAVMARGVPIFTDAEL-----LFRAVRDSGSSARFVGITGTNGKSTTTALLAH 137

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   +G+     G                P+ + L +    L   GV    +E SS+ L+
Sbjct: 138 ILADAGIEVAAGGNLG-------------PAALALPR----LGDDGV--YVLEMSSYMLE 178

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+  ++  AG+  NL  DH+D H     Y  AK RLF      +       D A +  
Sbjct: 179 --RIVNMRFSAGAMLNLTPDHLDRHGNMAGYEAAKSRLFVGQEAGDVAVFGIDDAATAAM 236

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +        V   G Q   I  +    + +   +       D D    LPG     NA
Sbjct: 237 ATRFEDGKRRIVRISGCQRADIFARGRKLVDHSGVI------ADLDAAAALPGTHNAQNA 290

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             AA L +A G+   ++   +     +P R   V + +  G  ++D +  +N+       
Sbjct: 291 AAAAALALAFGVPREVIGRAMASFPGLPHRQRVVASVA--GVTFIDDSKATNA----DSA 344

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK-------I 428
            R +     +V    G  +D G  P+       +A   ++  D P              I
Sbjct: 345 ARALDCHERLVWIAGGIGKDGGITPL-APWFSRVAHAVLIGRDAPEFAATLASAGVSCEI 403

Query: 429 RAEIIHGIPGFIEKGNRI 446
              I + +P       RI
Sbjct: 404 AGTIENAVPSAFAAARRI 421


>gi|134302471|ref|YP_001122441.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|158513856|sp|A4IZG9|MURD_FRATW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134050248|gb|ABO47319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 416

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 126/356 (35%), Gaps = 61/356 (17%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AVTG++GKS+V +    + +  G  S  +G   T                
Sbjct: 91  YIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGT---------------- 134

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               AL+ +  +   +  VE SS  +  +  + ++   G   N+  DH+D +Q  + Y  
Sbjct: 135 ---PALNKIGEK-FDYCVVEVSSFQI--NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQ 188

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K+ L                        K +++     +  G +    +     AI+  
Sbjct: 189 SKLNL-----------------------AKFSNDFFVYDVHNGIKYAGEYQIIRGAIYRN 225

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               + +          L GE  + N +V   +   +G+D    +  ++K   +  R + 
Sbjct: 226 STKLLDI------VETKLFGEHNLENIIVVLNILDRLGLDINQAIASIKKFKGLEHRCKI 279

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V      G  Y++ +  +N +   +  + +IT+ + I++   G  +  G   +M K    
Sbjct: 280 V--KKVNGTTYINDSKGTN-VGATIAALNSITNSKNIILLLGGVAKG-GDFSLMIKSLDK 335

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +        D E I + I  G   +    N  +A   A +  N  +++++
Sbjct: 336 YVKYVYI-----YGADKEYIESYI-KGYCKYQLCNNMKQAFELASQKANSNEIVLL 385


>gi|262364614|gb|ACY61171.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis D182038]
          Length = 127

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 56/111 (50%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           V  +     D S       P++ + N  + LS  A + Y +    +    G
Sbjct: 64  VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALAFGRG 114


>gi|123969098|ref|YP_001009956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. AS9601]
 gi|123199208|gb|ABM70849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 476

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 105/319 (32%), Gaps = 40/319 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS +      +        I V+        +           N + +TGT+GK++V 
Sbjct: 81  VVVSPSIPYDHVTIVELKKKGIRVIGEINVAWEIL-------KDTNWIGITGTNGKTTVT 133

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I   +GL +   G   T                 L K       + +  V  E S
Sbjct: 134 HLLSHILCDTGLYAPFAGNIGTP----------------LCKYAYSKKHEKIDWVVAELS 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ ++      +K   G +T    DH++ H+T + YFN K  L    L K    I   DD
Sbjct: 178 SYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSL----LEKSDFRIYNYDD 231

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFPLPG 308
              +              S+            C      Q  I   GK       F L G
Sbjct: 232 KNLRNYYSSLSRGVWITTSLDKSNFIH-----CDYWIDDQAYIVERGKKLFKLEHFSLKG 286

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N L+       +G+    + + L     +P R E +  N+    I    A   +S
Sbjct: 287 MHNLQNLLLVIAAARKVGLSGKKIKDSLSNYKQLPHRMETIYKNNGLEIINDSKATNFDS 346

Query: 369 LEMILKNIRTITSGRIIVV 387
               + +I     G+II++
Sbjct: 347 SIAGISSIE----GQIIII 361


>gi|15789660|ref|NP_279484.1| hypothetical protein VNG0412G [Halobacterium sp. NRC-1]
 gi|169235374|ref|YP_001688574.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Halobacterium salinarum R1]
 gi|10580024|gb|AAG18964.1| dihydropteroate synthase [Halobacterium sp. NRC-1]
 gi|167726440|emb|CAP13225.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Halobacterium salinarum R1]
          Length = 815

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 80/405 (19%), Positives = 137/405 (33%), Gaps = 51/405 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-------------- 141
           ++T   L+              +A  G++GK S A F + I + +G              
Sbjct: 23  ESTADLLASLGDPHQDGPDYVQIA--GSNGKGSTARFTESILRAAGLDVGLYTSPHFDDV 80

Query: 142 -----------LSSFQIGPTSTISSFAQDNRLTTPSPIYLA----KALSYLSSQGVTHVS 186
                        +       TI+ +  +      +P Y       AL   S   V    
Sbjct: 81  RERVTVNGRRMSKAALTTFIETITPYVTERAADGAAPTYFEVVTAMALWQFSRADVDVAV 140

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E    G        +   A + T++  +H D             R    + P     ++
Sbjct: 141 LEVGI-GGRLDATSVVDPSASAVTSVTLEHTDVLG---ETIPEIARDKAHVAPAGDTPLV 196

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A    + + +    +    V +VG               N  +  +S+ G D+     +
Sbjct: 197 TA---TTDDALAAVRDHAGAVRTVGDTAGRDVTATYEGRTNHTEAAVSITGDDWSVATEI 253

Query: 307 P--GEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           P  G+ Q  NA VAA L     G+D   +   L   H   GRFE +G +     + +D A
Sbjct: 254 PLLGDHQAENAGVAAALARQTAGVDDDAIARGLRSAHWP-GRFEVMGAD---PVVVLDGA 309

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RS 422
           H   +   + + +      R++ VFG   D+D G        AL   D     +  P R+
Sbjct: 310 HNPGACGAVAETVAEFDYDRLLTVFGAMHDKDHGAM----AAALPTPDHVWACEPVPDRA 365

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAG 466
           ED + + A       G +     +E A+  AI      D+++VAG
Sbjct: 366 EDADVLAAVFEDAGAGTVSVTRAVESAVADAIAEATADDLVLVAG 410


>gi|330901307|gb|EGH32726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330978024|gb|EGH77927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 449

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 131/407 (32%), Gaps = 45/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     NT +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPAVEYVLNTGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGETPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIEM--GCWTPVQTTGQNGQW---QARLLSEDGSRFEVLFEGELQGTVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+   L ++ L     V  R E V  + RG  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPLLGVQALSAFKSVKRRMEKV-ADVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R       I+            G      + ++  AD  +          P
Sbjct: 336 AIATTLDGLRKKVGDASIIAVVEPRSNSMKLGAHRDGLRESVSQADQVV-------WYAP 388

Query: 426 EKIRAEIIHGIPGFIEKG---NRIEA-IRTAIEMLNKQDVLVVAGKG 468
             +  ++   + G        + +EA I            +V+   G
Sbjct: 389 PNLGWDLAATVAGGTVPALVCDSLEAIIAQVKSQAQPGTHIVIMSNG 435


>gi|222823643|ref|YP_002575217.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter lari RM2100]
 gi|222538865|gb|ACM63966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter lari RM2100]
          Length = 466

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 123/362 (33%), Gaps = 51/362 (14%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            ++       I+ +T + GK+S+ +F+ ++ +            +T     +D      +
Sbjct: 142 KKICDNPKLKIILITASFGKTSIKNFLYEVLKDEFKCYKTPRSVNTFMGIVKDINENLEN 201

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              +     Y+   G    +             + +         +G  H++Y +TQ   
Sbjct: 202 NTEI-----YIVEAGAREQND-------ILEITEFLNPQICIVGEIGLAHLEYFKTQDNI 249

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCA 284
            NAK++  +                      KR         ++ Y+ +F    L  V A
Sbjct: 250 RNAKLQALKS---------------------KRLEKYFLHSSTL-YENEFYDDCLSDVRA 287

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   I ++   +DF   L G F  YN  V   L   +GI    +++ +  L  V  
Sbjct: 288 SLEGLDFKIRLDDNIYDFHANLLGAFNAYNISVCILLAYYLGIKIEDIIKSISNLKAVEH 347

Query: 345 RFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           R + +   S+  +  +D     N   +    +  ++   GR ++V     + ++ +   +
Sbjct: 348 RLQVI---SKEPKFIIDDGFNGNFKGMSQSYELCKSY-QGRKVLVTPGIVEVNEEENIKL 403

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            KI  +  D  I+T     SE    I    I        EK   ++A+     +    D+
Sbjct: 404 CKIINECFDFVIIT-----SEANSTILQKHITLDFYVLKEKSQLVQALSK---LTQNGDL 455

Query: 462 LV 463
           ++
Sbjct: 456 IL 457


>gi|300741263|ref|ZP_07071284.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|311113338|ref|YP_003984560.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380448|gb|EFJ77010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|310944832|gb|ADP41126.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 533

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 131/386 (33%), Gaps = 54/386 (13%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+   ++  G+     L +TGT+GK++    V  I + +G  S Q+G     + +     
Sbjct: 150 LAWRLNQRQGRVTPKWLCLTGTNGKTTTVGMVDSILKAAGKKSLQVGNVGMPAVY----- 204

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                        +    +     +VE SS  L  H    +   A    N+  DH+D+H 
Sbjct: 205 -------------AVADDEPYEFFAVELSSFQL--HWTSSLSPYASVVLNVAEDHVDWHG 249

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH------------NAGCRVLS 269
           + +AY   K R++E     ++  I   D A +  +++ A                  V  
Sbjct: 250 SFEAYKADKARVYEN---TQAACIFNTDHADTLRMVEEADVIEGARAIGISSTEIPSVSM 306

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +G     I  +        + + + V           P +  V NAL AA LC A  I  
Sbjct: 307 LGLAENIIVDRAFLKNRYSEALELGVLEDLAPVPGQAPAQHTVENALAAAALCRAANIAP 366

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V + L        R + V        +    A   ++    +    ++    I +   
Sbjct: 367 EAVRDGLRSYKPGAHRNQTVLYRDGIQWVNDSKATNPHAANASMSAYPSL----IWI--A 420

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----- 444
            G  +      ++ + A  L  + I+  D   +   +   A+    +P +    +     
Sbjct: 421 GGLSKGVEYDDLIAQHASRLKAVLIIGTD---TAGLKTSLAKYASHVPTYNMTASANDPS 477

Query: 445 -----RIEAIRTAIEMLNKQDVLVVA 465
                   A+  A E+  + D +++A
Sbjct: 478 DGVTVMEAAVVKAEELAAEGDTVLMA 503


>gi|295425114|ref|ZP_06817819.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065173|gb|EFG56076.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 459

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 118/354 (33%), Gaps = 43/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I     Q+SG  ++ +G      S               
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKD------ 166

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-HIDYHQTQQAYFNA 229
                         + VE SS  L    +  I     +  ++  + H+DYH+T + Y NA
Sbjct: 167 ------------DILVVEISSFQLL--GVTDIDPKVAAIIDIYHNVHLDYHKTFENYVNA 212

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K+             I   D     +  K    A  +  S         +         +
Sbjct: 213 KLN-VTRFQNSADYFIANFDQKDILKKEKETTKAKIQTFSEKDNSADYFIGDEYLESQSE 271

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++ + ++         LPG     N LVA  +   +G ++  +   L        R ++V
Sbjct: 272 KI-MKIDD------IKLPGIHNQQNCLVAIAISKLMGAENDDIQAVLSTFAGAKHRLQYV 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T   G +IY D   T+  +E     I +       V+   G DR      ++      +
Sbjct: 325 MT-LDGRKIYNDSKSTN--IEAATVAIPSFKQPE--VLIAGGLDRGFTFDSLVPLFKEHV 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I +  +      D  +       GI   + +    EA+  A E+    DVL+
Sbjct: 380 KAIVLYGETKYLLADAAR-----KAGIKDIVIENTLQEAVPKAYELTEPGDVLL 428


>gi|257066544|ref|YP_003152800.1| FolC bifunctional protein [Anaerococcus prevotii DSM 20548]
 gi|256798424|gb|ACV29079.1| FolC bifunctional protein [Anaerococcus prevotii DSM 20548]
          Length = 425

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 139/395 (35%), Gaps = 46/395 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-------ISSF 156
           L       +    ++ + GT+GK S A+ +     R         P  T       IS  
Sbjct: 29  LLEYFDNPQDKIKVIHIAGTNGKGSTANMIANTLSRENRVGLFTSPYMTKINEAISISGV 88

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQG---------------------VTHVSVEASSHGLD 195
              +         L K L  L  +G                     V    VE    G  
Sbjct: 89  DISDSDFAEIIDRLKKPLEELDKKGLHNSYFEVLTAIMYIYFYEKKVDVAVVEVGLGGSL 148

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                    +A   T + +DHI     + +     K      ++  +S   +Y  +   K
Sbjct: 149 DSTNIIKSPLACVITTISKDHIQILGDSLEEIAQNKA----GIIKDKSEVFLYPKEGTVK 204

Query: 255 EV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           EV +K+  N   R+ +   +     +  +    +  + +        +    L G  Q+Y
Sbjct: 205 EVFIKKIENTSSRLHTFDKE----EINIIKTGPDYNEFSFRSY---KNIKTRLVGIHQIY 257

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A      +  + ++    + +  +       +   ++  R+ VD +H   +++ ++
Sbjct: 258 NAVTALITLDFLKDEFSICERDIYEGLLTTRNPGRLELINKNPRVLVDGSHNREAIDALI 317

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAE 431
            +I +    ++IV F    D+D             +AD  IVT   DNPR+ D +++ + 
Sbjct: 318 DSISSYKYRKLIVGFSILKDKDYDYVIDS---LAKIADEIIVTKIKDNPRAFDTDELYSL 374

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +       IE  + ++A   + E+ ++ D+++  G
Sbjct: 375 VKDKAKKAIEIVDLVKAYEYSKELAHEDDLVLWCG 409


>gi|163794525|ref|ZP_02188496.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium BAL199]
 gi|159180249|gb|EDP64772.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium BAL199]
          Length = 472

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 157/475 (33%), Gaps = 93/475 (19%)

Query: 48  AIVGNKEDGHLFIPQAIAQ----GAEAIVVSSAYSLQDFSATIRSNT------PILVVDN 97
           A+ G   DG   +   +AQ    G +A+V+S             +        PI+   +
Sbjct: 47  ALQG--VDGATVVD--LAQRGLGGVDALVLSPGIPHTHPEPHPVAAAAKAVGVPII--GD 100

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
               L              ++A+TGT+GKS+  + +  I   + +     G         
Sbjct: 101 VELLLRAL-------PDRRLVAITGTNGKSTTTALIGHILASANVPVEVGGNLG------ 147

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                          AL +        V +E SS+ L+      +      + N+  DHI
Sbjct: 148 -------------RPALEFADPGPNGVVVLELSSYQLEL--TPSLAPTVAVWLNITPDHI 192

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---- 273
           D H +   Y  AK R+F    P+   A+I  DDA+S++V  R    G R+  +       
Sbjct: 193 DRHGSLAGYVAAKRRIFAHQTPR-GLAVIGNDDAHSRDVADRLRRDGRRIFDLSGVGPVV 251

Query: 274 ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                +   L    +   +  ++++           LPGE    NA  A   C A+GI  
Sbjct: 252 GGVYAEDSELIDARSGRPETVLSLT-------EAPALPGEHNAQNAAAAFAACAALGIQR 304

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH-----TSNSLEMILKNIRTITSGRI 384
           + + + +     +  R E +     GG +YV+ +       +         I  I  GR 
Sbjct: 305 SAIADGIRSFPGLAHRQERIAEA--GGVLYVNDSKATNADAAARALACYSAIYWIAGGRG 362

Query: 385 I---VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
               V           K  ++G+ A   A                +I  +   G+   +E
Sbjct: 363 KEGGVSSLAPFFPRIRKAYLIGESAGTFA---------------REIGDDCPTGLCRTLE 407

Query: 442 KGNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 A+R A            +V+      +     N E +      ++R++L
Sbjct: 408 -----MAVRQAHLDAQADPRPGAVVLLSPAAASFDQFPNFEVRGDRFRTLVRDLL 457


>gi|30250149|ref|NP_842219.1| mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase transmembrane protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30139256|emb|CAD86129.1| mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 454

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 121/400 (30%), Gaps = 33/400 (8%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS    L    A + ++ P L            A  L   H   +LAV GT GK++ +S
Sbjct: 70  VVSRGNPL--MEAILDAHLPYL------SGPQWLAQHLL--HNRWVLAVAGTHGKTTTSS 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I + +GLS   +       +F    RL              + +        +   
Sbjct: 120 MLAWILEYAGLSPGFL-IGGVPENFGLSARLGIIEAEQTPSPFFVIEADEYDTAFFD--- 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               + +    +       NL  DH D      A       L   ++P+    ++   D 
Sbjct: 176 ---KRSKFVHYQPRTVVLNNLEYDHADIFPDLAAIERQFHHLI-RIVPRNGLLVVNGQDT 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEF 310
             + V+ +       V        +        +   + +++  +G       + L GE 
Sbjct: 232 ALQRVLNQ--GCWTPVEQFDVDDGWQ-----ITMEQNESLSVRFQGVSQGILHWELLGEH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A       G+ + L +E L +   V  R E  G       +Y D+AH   ++ 
Sbjct: 285 NCMNALAALAAARHAGVPAQLGIEALSRFKNVKRRMELRGV-INDIHVYDDFAHHPTAIR 343

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDPEKI 428
             L  +R       I+                  +A  LD AD           +    I
Sbjct: 344 TTLAGLRAKIGQARIIAVLEPRSNTMKLGVWQNDLAASLDQADQIFCY----AHQIGWNI 399

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + +           +    I       +  D +++   G
Sbjct: 400 DSALASLDDKTEIHHDLTTMISAIAATAHPGDHILIMSNG 439


>gi|317496809|ref|ZP_07955139.1| FolC protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895821|gb|EFV17973.1| FolC protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 424

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 152/415 (36%), Gaps = 58/415 (13%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L +DN ++ L         +    ++ + GT+GK S  +F+  I + SG   ++ G   
Sbjct: 19  VLGLDNIKELLERLG---NPQDQLKVVHIAGTNGKGSTLAFLAGIFRESG---YRAGRYV 72

Query: 152 TISSFAQDNRLTTPSPIYLAKAL-----------SYLSSQGVTHVSVEASSHGLDQ---- 196
           + +SF  + R          + L             +   G++H ++      L      
Sbjct: 73  SPASFCYEERFRINEENISKEDLCFYMEKIKKISDEMVRDGMSHPTMFEIETALSFLYFL 132

Query: 197 --------------HRLDGI----KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEEL 237
                          RLD      K IA    ++G DH+ +   T +     K  + +E 
Sbjct: 133 DKKVDVVLLETGMGGRLDATNVVKKPIAVIIASIGMDHMQFLGDTIEKIAAEKAGIIKEG 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVE 296
            P          ++ ++ + ++A    C+V  V  +G    ++ +    N +  +  S +
Sbjct: 193 CP---VISYNNQESVNEVIKEKAKEMHCKVTFVNSEG----IRVLSESLNGESFSYRSSD 245

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIG----IDSALVLEHLEKLHVVPGRFEFVGT 351
           G+ ++    PL G  Q+ NA +A      I     I      + L K      R   +  
Sbjct: 246 GRWYEKIEIPLLGRHQINNAALALEALNTIRNYYCISEFQTEDGLRK---TIWRGR-IEI 301

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   +  D AH  +  + +L  ++   + R  +++  G   D+    ++  +    A 
Sbjct: 302 LEKDPLVICDGAHNPDGAKSLLNFLQNNFTNRR-LIYIMGVLSDKDYEQMIQILTPMAAK 360

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  V  DN R+   + +   I        E+    E +    +  +K+DV+++ G
Sbjct: 361 VYTVAPDNARALSSKDLAECIRKYHHDVEERQRLKECLEEVKQQADKEDVIIICG 415


>gi|325109140|ref|YP_004270208.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces brasiliensis
           DSM 5305]
 gi|324969408|gb|ADY60186.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces brasiliensis
           DSM 5305]
          Length = 495

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 117/387 (30%), Gaps = 44/387 (11%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
             GH      + +  + ++ S A    +           L+V    + L   + ++    
Sbjct: 72  FHGH--AAAHLPENTDVVIHSLAIPADNPEMRAAVEQGCLIVS-YAQALGRLSEQI---- 124

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++ +S +  I   +G +   +             +    S       
Sbjct: 125 --PTVAVAGTHGKTTTSSLLSHILSTAGCAHQLVN-----GGRFLHTQEKAISSEKPDWL 177

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++       + +                I        ++  DH D +   +A   A    
Sbjct: 178 VAESCEFRRSFLE---------------ISPKIAILLSVEADHFDCYPD-EATLVAAFAD 221

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-----------IHLKKV 282
           F   +P E   ++ A    +    + A  +     +     +              +   
Sbjct: 222 FCSRMPSEGKLLVNAACPRALRAAQAADCSIICFDTRDVSARASTNAIDEATHTWTVGNP 281

Query: 283 CAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              HN  +  +   + +      PL GE Q+ NA+ A    +  G++    +  +E    
Sbjct: 282 IQTHNGVEFELQYGDQQPHACRLPLSGEHQISNAIAAIAAAVECGVELKQAVLAVESFPG 341

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
           V  RF+  G  +    +  DYAH    +   +   R      ++ V F     +   +  
Sbjct: 342 VERRFQLRGRYAD-WLLLDDYAHHPTEIRATISAARERFPDYLLTVAFQPHQIQRTERLM 400

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEK 427
                AL LAD   V       E  ++
Sbjct: 401 SEFADALRLADRVFVLPVFAARETADQ 427


>gi|254372497|ref|ZP_04987986.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570224|gb|EDN35878.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 456

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 103/285 (36%), Gaps = 22/285 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI- 293
            ++           DD   K +     +   +V S       + +       +  +  + 
Sbjct: 211 RKMSSTAKIIYNAKDDNVQKIISMGCWSELVKVNS------DLGISITKHTLDYSKFELC 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + G + +  + L GE    NA+ A  +   + I   +V + LE    V  R E V ++ 
Sbjct: 265 DINGNNVEVSWGLIGEHNALNAMSAYAVAKQLNISDEVVKDALESFRGVKRRLE-VLSHQ 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 324 DNVTLYDDFAHHPTSIKLTLEAVRNKAKDAYVVALIDPRSNTMRQ 368


>gi|254495310|ref|ZP_05108234.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
 gi|85819664|gb|EAQ40821.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
          Length = 450

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 114/348 (32%), Gaps = 33/348 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNT--RKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +S    +       + + P LV       K  S           +  + + G+ GK+++ 
Sbjct: 59  ISQDLDVIILGMHAKIDNPELVKAQEMGLKIYSYPEFLYEQSKDKTRVVIGGSHGKTTIT 118

Query: 131 SFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S +  +         + +G                         L+  +   V       
Sbjct: 119 SMILHVLNYHDREVDYMVGAQL--------------DGFETMVHLTEENDFIVLEGDEYL 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS    + +    K      + +  DHI+   T + Y   + ++F + +      +  ++
Sbjct: 165 SSPIDMRPKFHLYKPNIALLSGIAWDHINVFPTFENY-KEQFKIFTDSMINGGSMVYNSE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D    E+++ + N   +           +  +  +      +T  +E ++ D    + G+
Sbjct: 224 DENVAEIVESSENHIKK-----------YPYETPSHFIDNGITY-LETEEGDLPLEIFGK 271

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N   A  +C  +GID     E +        R E +  NS    ++ D+AH+ + +
Sbjct: 272 HNLQNLAGAKWICQHMGIDEDDFYEAIASFSGASKRLEKIAENSE-TVLFKDFAHSPSKV 330

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIV 415
               K ++       +I               +   K ALD AD A+V
Sbjct: 331 AATTKAVKEQYKERTLIACLELHTYSSLNAEFLSEYKGALDAADKAVV 378


>gi|330939948|gb|EGH43152.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 449

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 131/407 (32%), Gaps = 45/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     NT +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPAVEYVLNTGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGETPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIEM--GCWTPVQTTGQNGQW---QARLLSEDGSRFEVLFEGEFQGTVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+   L ++ L     V  R E V  + RG  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPLLGVQALSAFKSVKRRMEKV-ADVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R       I+            G      + ++  AD  +          P
Sbjct: 336 AIATTLDGLRKKVGDASIIAVVEPRSNSMKLGAHRDGLRESVSQADQVV-------WYAP 388

Query: 426 EKIRAEIIHGIPGFIEKG---NRIEA-IRTAIEMLNKQDVLVVAGKG 468
             +  ++   + G        + +EA I            +V+   G
Sbjct: 389 PNLGWDLAATVAGGTVPALVCDSLEAIIAQVKSQAQPGTHIVIMSNG 435


>gi|325956500|ref|YP_004291912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus 30SC]
 gi|325333065|gb|ADZ06973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus 30SC]
          Length = 459

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 117/353 (33%), Gaps = 41/353 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I     Q+SG  ++ +G      S              L
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATK---DDIL 169

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              +S     GVT +                +  I   + N+   H+DYH+T + Y NAK
Sbjct: 170 VVEISSFQLLGVTDID-------------PKVAAIVDIYNNV---HLDYHKTFENYVNAK 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +         +   I   D        K+   A  +  S         +         ++
Sbjct: 214 LN-VTRTQTSDDYFIANYDQKDILAKEKKVSPAKMQTFSETDHNADYFIGDEYLESQNEK 272

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +    +         LPG   + N+LVA      +G D+  ++  L        R ++V 
Sbjct: 273 IMKIAD-------IKLPGIHNLQNSLVAIATSKIMGADNDDIVAVLSTFAGAKHRLQYVT 325

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G ++Y D   T+  +E     I         V+   G DR      ++      + 
Sbjct: 326 T-LDGRKVYNDSKSTN--IEAATVAIPAFKEPE--VLIAGGLDRGFLFDDLVPLFKKHVK 380

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I +  +      D  +       G+   +      EA+  A E+    DVL+
Sbjct: 381 AIVLYGETKYLLADAAR-----KAGVKDIVIVNTLQEAVPRAYELTEPGDVLL 428


>gi|307944896|ref|ZP_07660233.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseibium sp.
           TrichSKD4]
 gi|307771820|gb|EFO31044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseibium sp.
           TrichSKD4]
          Length = 466

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 105/287 (36%), Gaps = 37/287 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS  + L  ++     +  I V+ +   F   F  R        ++A+TGT+GKS+  S 
Sbjct: 75  VSLTHPLPHWTVDKARDAGIEVIGDVELF---FRERRKVCPEAPVVAITGTNGKSTTTSL 131

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  + + +GL +   G                         L         H  +E SS+
Sbjct: 132 IAHLLKSAGLDTQMGGNIGV-------------------PLLELEPFHAERHFVIECSSY 172

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +D      +    G   NL  DH+D H + + Y   K RL          AI+  DD+ 
Sbjct: 173 QIDLA--PSLDPTIGIHMNLSPDHLDRHGSLENYAAIKERLVAG----AKVAIVGVDDSL 226

Query: 253 SKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           S ++  R   A   V  +        G + H  K+   ++  Q  + +     D +  L 
Sbjct: 227 STQIADRLELARKPVCRISGAFELPDGVYAHQGKLFEAYDGAQRKVGI----LDGIDSLR 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           G+    NA  A      + +D A +L+ +     +  R E VG + R
Sbjct: 283 GDHNGQNAAAAFAALRVLKVDEAEILKGMADFPGLHHRMEVVGRSGR 329


>gi|228473309|ref|ZP_04058063.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275211|gb|EEK14009.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 450

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 117/366 (31%), Gaps = 54/366 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ +S +  I                +    ++ +             S  
Sbjct: 109 LAVAGTHGKTTTSSILAHILVECKAPVSAF-----LGGICENFQ-------------SNF 150

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G     VEA        RL          T +  DH+D + T + +       F   
Sbjct: 151 ICKGTELTVVEADEFDRSFLRLS---PSIACITAVDADHLDIYGTAEEFQKG-FEDFTHR 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
           L      I+     ++              L+ G   G    + +V   +     T+S  
Sbjct: 207 LKPGGKLIVRRGLPFAG-------------LTYGIADGSDYEISQVRIQNGGYLFTLSYT 253

Query: 297 G-------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   +  D     PGE  + NAL A  +    G   A +   L     V  RF ++
Sbjct: 254 DPKTGNREEVKDCTLFRPGEHHLLNALAAVAVAHQAGYPLADLARALASFKGVRRRFSYI 313

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALD 408
             N+       DYAH    L  +   +RT+     I ++F                 +L 
Sbjct: 314 -INTPEQVFIDDYAHHPTELNALYNGVRTMYPNEEITILFQPHLFTRTRDFADGFAQSLA 372

Query: 409 LADIAIVTDDNPRSEDP-EKIRAE-IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLV 463
             D  ++ D  P  E P E I ++ +++ I      +   + I  I       +   VLV
Sbjct: 373 QFDRVVLLDIYPARELPIEGITSQWLLNKIDNPNKILVPKDNI--INYL--QSHPSRVLV 428

Query: 464 VAGKGH 469
           +AG G 
Sbjct: 429 LAGAGD 434


>gi|168208619|ref|ZP_02634244.1| FolC bifunctional protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170712998|gb|EDT25180.1| FolC bifunctional protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 440

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 140/386 (36%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +G                   I+    D        
Sbjct: 40  KFIHIGGTNGKGSTTAMISSVLKEAGFKVGMYTSPYLEEFEERIQINGENIDKDDLAILM 99

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLDG---IKLIA 206
             + KA+  +   G    +       L  +                  RLD    +    
Sbjct: 100 GDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGGRLDATNVVLPEV 159

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    T +     K  + +  +P     I Y  +  + EV+K   N   
Sbjct: 160 VVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVP----VISYPQEEKAIEVIKERCNELG 215

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L V    + I    +    + Q++ +S+E +       L G+ QV N LVA    I +
Sbjct: 216 CNLEV-VDTEDIRNIIIDKEKHVQKIEVSLEDEILKIDLGLLGDHQVKNFLVALKTLIKL 274

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                 I +  + E  +K+  + GR E +  N     + +D AH  + +  +  +I    
Sbjct: 275 RNNGVNISNEAIKEGFKKVRWI-GRMEVLNEN---PLVVIDGAHNIDGIRNLRNSIDKYF 330

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + I +   G   D+    ++ +I   +  + IV   + R+ED E +  ++   +    
Sbjct: 331 NFKNITLIL-GVLGDKQVDEMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVF 389

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  EA   A  + N+ D+L++ G
Sbjct: 390 KFKDYKEAYNKAYSLTNEDDLLLICG 415


>gi|157736998|ref|YP_001489681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
 gi|157698852|gb|ABV67012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
          Length = 478

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 128/352 (36%), Gaps = 40/352 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +T + GK+S+ +++  I +            +TI+    D     P+   +     
Sbjct: 158 KIVEITASFGKTSIKNYLYHILKNKYKVYKTPRSVNTIAGIVLDVNKDLPADTQI----- 212

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G           G  +     ++       ++G  HI+Y +T +   N KM + +
Sbjct: 213 YIAEAGARVK-------GDIEEITMFLEPQICVIGSVGEQHIEYFKTLENIINTKMEILK 265

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               K          + S+ + K  ++                L  V +  +     + V
Sbjct: 266 SPNMKMGFVHESVPISNSQNITKFPNS----------------LHIVKSNLDGIWFDVEV 309

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G    F  P+ G F   N      +   +G+D   +   L  L  V  R + +  N   
Sbjct: 310 GGNIEHFYAPILGSFNAINLTAVILVAHYLGMDILEIKAALTTLPQVEHRLQKIEAN--- 366

Query: 356 GRIYVDYAHTSNSLEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G+I VD +   N LE +L+   I +   GR +++     +       ++ K   +  D  
Sbjct: 367 GKIIVDDSFNGN-LEGMLEAVNICSSYEGRKVIITPGLVESTDEANILLAKAIDENFDYV 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T     S + + ++A I       ++  ++++      E+    D+++ A
Sbjct: 426 ILTG----SLNTQLLKANINENKVYILKDKSKMQ--EVLAELTRTGDLILFA 471


>gi|332534480|ref|ZP_08410317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036048|gb|EGI72525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 451

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 97/305 (31%), Gaps = 24/305 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  + + +GL    +     I    Q+  ++         
Sbjct: 101 QDSWVLAVAGTHGKTTTASMLAWVLEYAGLKPGFL-----IGGIVQNFGVSAKVGETPFF 155

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +                 H L                NL  DH D  +   A       
Sbjct: 156 VIEADEYDTAFFDKRSKFVHYL---------PRTLILNNLEFDHADIFEDLNAIKKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    LP+    I    D    +V+ +   +    L     G     + + A  ++  V 
Sbjct: 207 LM-RTLPQSGKVIWPKQDVALNDVIAQGLWSDSETL-----GDDWSYELIKADGSEFNVL 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ E K     +   GE  V NA++       +GI     ++ L +      R E    +
Sbjct: 261 LNGE-KQGTVCWQAIGEHNVKNAIMTIAAARHVGIAIDHSIDALGEFISPKRRMEL-KAD 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLA 410
               ++Y D+AH   +++  L  +R       I+            G        +L  A
Sbjct: 319 INNIKVYDDFAHHPTAIKTTLAGLRAKVGDEKIIAILEPRSNTMKMGVHQHTLLDSLRDA 378

Query: 411 DIAIV 415
           D  ++
Sbjct: 379 DEVLL 383


>gi|325846545|ref|ZP_08169460.1| bifunctional protein FolC [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481303|gb|EGC84344.1| bifunctional protein FolC [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 424

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 139/403 (34%), Gaps = 49/403 (12%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--------- 147
           + +   SL       +    ++ + GT+GK S A+F+     ++                
Sbjct: 24  DLKAIRSLLKDLGDPQDKIKVIHIAGTNGKGSTANFIASTLAQTKKCGIFTSPYMEEINE 83

Query: 148 -----GPTSTISSFAQDNRLTTPSPIYLAK--------------ALSYLSSQGVTHVSVE 188
                G + +   F     +  P    L K                 Y   + V    VE
Sbjct: 84  EVRINGISISDEDFFYYIEMIKPICENLNKIGLRNTYFEVMTALMFRYFYDKKVDVCVVE 143

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIY 247
               GL        K +A   T +  DH+     + +     K  + ++ +P      IY
Sbjct: 144 TGLGGLLDSTNVVKKPLACLITTISMDHMSILGNSLEEIAKNKAGIIKDNVP----VFIY 199

Query: 248 ADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +A +  ++K+ A      +    +    I  +               +G   D    L
Sbjct: 200 PQNAVAYNIIKKEAKKKNAPLHEFSFDEITIKSQNTGYNQ------FDFKGYS-DVKTSL 252

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYA 363
            G+ Q+YNA  A  L      D  L    +++       PGR + + T  R   + +D +
Sbjct: 253 IGKIQIYNACNAINLLDYFKEDFDLDDNIIKEGIYKSKNPGRLQMISTKPR---VLLDGS 309

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   S + +L ++      R+IV F    D++   + I+ K++   ++I + + DNPR+ 
Sbjct: 310 HNRESFDALLDSLSLFNYNRLIVGFSVLKDKE--YKYIIKKLSEISSEIVVTSVDNPRAF 367

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + ++++  +           N I A           D+++  G
Sbjct: 368 EAKELKEIVKKDFSKVRAIENNISAYEYTKSRAKNDDLVLWCG 410


>gi|218708484|ref|YP_002416105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           splendidus LGP32]
 gi|254766064|sp|B7VJ01|MURD_VIBSL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218321503|emb|CAV17455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio splendidus
           LGP32]
          Length = 438

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 138/402 (34%), Gaps = 65/402 (16%)

Query: 68  AEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V +   +L   +    I++ TP  VV +              K     +A+TG++G
Sbjct: 69  ADLVVANPGIALATSEIQDVIQAGTP--VVGDI-----ELFGWAVNKP---AVAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL+   +G    I   A D          L               
Sbjct: 119 KSTVTDLTGVLAKAAGLN---VGVGGNIGIPALDLLELDADLYVL--------------- 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SS  L+      + L A +F NL  DH+D +Q    Y +AK+R+F         AI
Sbjct: 161 --ELSSFQLE--TTSSLNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIF----NNAQYAI 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFL 303
           +  +D       +   +    +++ G   +   +  +          ++  GK       
Sbjct: 213 VNREDK------ETYPDHSMPLVTFGLDDQEFGVATIDGTEW-----LTDNGKPVLPSQD 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V NALV+  L   +GID    LE L+  + +  R + V        +    A
Sbjct: 262 LTLVGRHNVANALVSLALLKQVGIDYNKSLEALKAYNGLTHRCQVVANKREIKWVNDSKA 321

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
               S    L  +     G + +    G  +      +   +A LD   +    +D    
Sbjct: 322 TNVASTLAALSGLE--YQGTLYL-LVGGVGKGADFSELKPVLAQLDRVQLCCFGED---- 374

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  A+ +   P         + I +    L   D++++
Sbjct: 375 ------AAQFMPLHPSAKTFDTMRDIIESISAQLVSGDMVML 410


>gi|89095261|ref|ZP_01168182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
 gi|89080468|gb|EAR59719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
          Length = 449

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 127/358 (35%), Gaps = 40/358 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    ++A+TG++ KS+V + V ++ + +G++    G   T                
Sbjct: 103 FCREISAPVIAITGSNAKSTVTTLVGEMAEAAGINVGVCGNIGT---------------- 146

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                L  L         +E SS  L+    + ++    +  N+  DH+D + + Q Y+ 
Sbjct: 147 ---PVLEMLEQPEKDLYVIELSSFQLE--TTNDLRAEVATVLNISPDHMDRYDSMQDYYK 201

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++  DD+ +  ++ +      +  +       + L  +      
Sbjct: 202 AKHRIFRG----AKNVVVNRDDSLTAPLLPQG----VKQTAFHLGKPDLKLFGLIEDQGD 253

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             + + ++         + G   + NAL A  L  A G+    +L  L     +  R E+
Sbjct: 254 VWLALGLDKLIAASELKMRGRHNLANALAALALGQAAGLPMDAMLNALRGFTGLRHRCEW 313

Query: 349 VGTNSRGGRIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           V    +G   + D   T+   ++  +     T++    IV+   G  +      +   + 
Sbjct: 314 V-AEHQGVTYFNDSKGTNVGATVAALNGLGGTLSEENGIVLIAGGDGKGAEFVELAEPLR 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  +  D    E       +I       ++     EA+  A ++    D++++
Sbjct: 373 NYGRALVYIGVD---GERLASQCGDINSRPAATMD-----EAVVIASQLAKSGDIVLL 422


>gi|119026121|ref|YP_909966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|226711884|sp|A1A2F1|MURD_BIFAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118765705|dbj|BAF39884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 479

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 122/371 (32%), Gaps = 45/371 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G      S                  
Sbjct: 102 PAQWIGITGTNGKTSTTEMTSEMLTACGLAAPAVGNIGKAVS------------------ 143

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H    ++L   + TN+  DH+D+H   + Y   K ++
Sbjct: 144 -HAAVDPANDVLCVELSSFQL--HFTYSLELDCAAITNIADDHLDWHGGIENYAADKAKV 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGY-----------QGKFIHLKK 281
           F  +   +   +  ADD    ++   A  A  CR +                G  + +  
Sbjct: 201 FHNV---KKALVYNADDERVTKLAFAAQTAPECRRIGFTLAEPKDGQIGVKDGWIVDMSG 257

Query: 282 VCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +      +   ++   +               + +AL A  L + +G D    L  L++ 
Sbjct: 258 IAGGEAGKPFQVAKVTDFTHLTEPDGTVYPHLLADALTALALVLGLGADKDKALAALKQF 317

Query: 340 HVVPGRFEFVGTN--SRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                R + V     S GG I +VD +  +N+               + +    G  +  
Sbjct: 318 TPGGHRIQTVAVAKTSDGGTIRFVDDSKATNAHAAKASLNSFADKSVVWI--AGGLAKGS 375

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIE 454
               ++   A  +    I+  D  P  +  +    +I   I    +       AI  A  
Sbjct: 376 RFEQLVADQARTIKAAIIIGKDQQPMLDAFKASAPDIPMSIIDPTDNDTVMARAIDAAGT 435

Query: 455 MLNKQDVLVVA 465
                DV+++A
Sbjct: 436 YAQSGDVVLMA 446


>gi|208778934|ref|ZP_03246280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida FTG]
 gi|208744734|gb|EDZ91032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida FTG]
          Length = 417

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 69/392 (17%), Positives = 147/392 (37%), Gaps = 65/392 (16%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS    L      + +     +V +   F                +AVTG++GKS+V + 
Sbjct: 60  VSPGIPLNKSPYRVLTKFKDKIVSDIDIFYQ-----YIKDTKAKTIAVTGSNGKSTVVTM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              + +  G  S  +G   T                    AL+ +  +   +  VE SS 
Sbjct: 115 TDFVLKDLGYKSILVGNIGT-------------------PALNKIGEK-FDYCVVEVSSF 154

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +D    + ++   G   N+  DH+D +Q  + Y  +K+ L +           +++D +
Sbjct: 155 QIDLF--NCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLNLAK-----------FSNDFF 201

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +V    HN G +     Y G++  ++     ++ + + I+           L GE  +
Sbjct: 202 VYDV----HNNGIK-----YAGEYQIIRGAIYRNSTKLLDIA--------ETKLFGEHNL 244

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N +V   +   +G+D    ++ ++K   +  R + V   +     Y++ +  +N +   
Sbjct: 245 ENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKIVKKVND--TTYINDSKGTN-VGAT 301

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  + +IT+ + I++   G  +  G   +M K          +        D E I + I
Sbjct: 302 IAALNSITNSKNIILLLGGVAKG-GDFSLMIKSLDKYVKYVYI-----YGADKEYIESYI 355

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             G   +    N  +A   A +  N  +++++
Sbjct: 356 -KGYCKYQLCNNMKQAFELASQKANSNEIVLL 386


>gi|157964491|ref|YP_001499315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           massiliae MTU5]
 gi|157844267|gb|ABV84768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           massiliae MTU5]
          Length = 498

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 120/359 (33%), Gaps = 80/359 (22%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  N  I +  +     +              +A+TGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVNIAKNFNIPITSDIDLLFAK-------SKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G                     ++   +  S  G     +E S
Sbjct: 120 ALISHILNSSGLDYPVAGNIG------------------VSALQAKASKDG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+  + +ES A+I  D+
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMTCYIAAKSKIFDR-MDQESYAVINIDN 215

Query: 251 AYSKEV-MKRAHNAGCRVLSVG-------------------------------------- 271
            Y +EV +K       +++                                         
Sbjct: 216 DYCREVFIKLQQEQRIKLIPFSVTKILENGISVVDDKISANFFDDISFELQRNSESFRQD 275

Query: 272 -YQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +QG+     K+       Q ++  S       F   L G     N   +  +   IG++
Sbjct: 276 EFQGEPAERIKIREHRRDLQNSLVSSFMHYAVPFNKNLQGVHNCENIAASYAVAKIIGVE 335

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITSG 382
              +LE +     +P R +++G+ +     + + +  +N++  +     L NI  +  G
Sbjct: 336 PKKILESISSFQSLPHRMQYIGSINNIS--FYNDSKATNAISAVQSIKALDNIYWLAGG 392


>gi|332976312|gb|EGK13169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Psychrobacter sp.
           1501(2011)]
          Length = 496

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/386 (15%), Positives = 115/386 (29%), Gaps = 35/386 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLA 171
              ++LAV GT GK++  + +  +    G+ +   IG    + S  +          YL 
Sbjct: 101 QNRHVLAVAGTHGKTTTTTMLAWVLHYCGIDTGFLIGGVPLVHSEDEKLTQAFAHSSYLG 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              +    +G   +  +         R   +  +       NL  DH D  +   A    
Sbjct: 161 ADKTADGKRGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFKDLDAI-QT 219

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQG----KFIHLKKVCA 284
           +      ++P     I+ A     +  + +       R   +        +    K    
Sbjct: 220 QFHHMIRMIPSTGQIIMPAHTPSLEATIDKGCWTPIWRTEILDAANPQGTEGCTWKAQLI 279

Query: 285 IHNKQQVTISVEG------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +  +  +                + + G   V NA+VA      IGI      + L +
Sbjct: 280 EEDGSEFLVHYHDAKQGQTVTGKVHWGMSGRHNVENAMVAVAAAFDIGISVEQACDALSQ 339

Query: 339 LHVVPGRFEFVGTNSRG-------GRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGC 390
              +  R E +              +I+ D+AH   ++   L    + + + +I  V   
Sbjct: 340 FSGIKRRMELIADLEHNTADSSSKVQIFDDFAHHPTAITTTLDGAKKKLKTAKIWAVIEP 399

Query: 391 G-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNR 445
                  G        +  LAD  I  +  P   +      E+I        K     + 
Sbjct: 400 RSNTMKLGVHKDNLAASAQLADEVIWYE--PAGLEWG--LTEVIGNAKDISNKQYVMNDT 455

Query: 446 IEAIRTAIE---MLNKQDVLVVAGKG 468
            + I   +      NK D +++   G
Sbjct: 456 QKIIDHLLAQMGQANKDDAIIIMSNG 481


>gi|218886345|ref|YP_002435666.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757299|gb|ACL08198.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 546

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 92/328 (28%), Gaps = 31/328 (9%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A     +    ++AVTG+ GK+SV   +  +      +    G  +T    ++  R    
Sbjct: 168 AHEKLLRLAPTVIAVTGSYGKTSVKHILAHVLGCYHPTLMTPGSINTPMGISRIIRERLT 227

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                  A             + A   G  +             TN+G  H +  +    
Sbjct: 228 DAHRFFIA------------EMGAYGIGSIERLCRLAPPDFAIITNVGPAHYERFKDLAT 275

Query: 226 YFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFI----- 277
              AK  L    + +    ++ A      ++++       A  R                
Sbjct: 276 VVRAKFELAHATVARGGRVVLPAALLAYDHARDFAAANAGAVLRCAGADVNADAGAGGAG 335

Query: 278 ------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                  +       +     +  + ++++   P+ G   V N  +A      +G++   
Sbjct: 336 VAEPSVRVLDAGQDLSGIHARLLYQEQEYEVRAPIHGMHHVDNVALAFAAACGVGVEPQR 395

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGC 390
           V+  L  L  +  R E          I   Y    +     L  +      G+  V+   
Sbjct: 396 VVSALRSLPQIAHRLEVKPQPDGSVLIDDAYNSNPSGFASALDLLDLYRKSGQRGVLVTP 455

Query: 391 GGDR----DQGKRPIMGKIALDLADIAI 414
           G              +G  A   AD+ +
Sbjct: 456 GMVELGTLHDSAHAELGARAAACADVLL 483


>gi|159902563|ref|YP_001549907.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159887739|gb|ABX07953.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 476

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 101/287 (35%), Gaps = 33/287 (11%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+  DH DY++  ++         E+        +   D      +  +++   
Sbjct: 177 DIGIITNIELDHTDYYKDLESLKET----MEKFSKSCKKVLANHDCPN---LQNKSNKNI 229

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLC 322
               +   +G            N+       E + F  +   PLPG   + NA+ A   C
Sbjct: 230 NWWSTQTIKGVDFSGIPTSINGNETTADF-YEKETFLGEITVPLPGLHNLSNAVGAIAAC 288

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
              G+  + +   L+ +     RF+F G   +G +I  DYAH  + +   ++  R + + 
Sbjct: 289 RLAGLSFSELKNSLKDIKPPNRRFDFKGQW-QGRQIVDDYAHHPSEINATIETARLMINT 347

Query: 382 ---------GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
                     R++VVF                 +L  ADI  +       E  E I    
Sbjct: 348 KTNWLPKISKRLVVVFQPHRYTRTKHLIKDFAKSLGKADIVFLAPIYSAGE--EMISDVS 405

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLN----------KQDVLVVAGKGH 469
           I+ +   I+K +   +I T+  M            K D+++  G G+
Sbjct: 406 INSLFSLIKKEHPNISIYTSTNMKELESIIKKNTIKDDLILFMGAGN 452


>gi|254369764|ref|ZP_04985774.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122723|gb|EDO66852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 416

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 127/356 (35%), Gaps = 61/356 (17%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AVTG++GKS+V +    + +  G  S  +G   T                
Sbjct: 91  YIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGT---------------- 134

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               AL+ +  +   +  VE SS  +  +  + ++   G   N+  DH+D +Q  + Y  
Sbjct: 135 ---PALNKIGEK-FDYCVVEVSSFQI--NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQ 188

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K+ L                        K +++     +  G +    +     AI+  
Sbjct: 189 SKLNL-----------------------AKFSNDFFVYDVHNGIKYAGEYQIIRGAIYRN 225

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               + +          L GE  + N +V   +   +G+D    ++ ++K   +  R + 
Sbjct: 226 STKLLDI------VETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKI 279

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V      G  Y++ +  +N +   +  + +IT+ + I++   G  +  G   +M K    
Sbjct: 280 V--KKVNGTTYINDSKGTN-VGATIAALNSITNSKNIILLLGGVAKG-GDFSLMIKSLDK 335

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +        D E I + I  G   +    N  +A   A +  N  +++++
Sbjct: 336 YVKYVYI-----YGADKEYIESYI-KGYYKYQLCNNMKQAFELASQKANSNEIVLL 385


>gi|94264633|ref|ZP_01288416.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93454928|gb|EAT05169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 140/411 (34%), Gaps = 86/411 (20%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           DGH   P+  A   +AIVVS    L         R+  PI+            A      
Sbjct: 70  DGHS--PELFAA-VDAIVVSPGVPLDIPALKEAARAGVPII---------GELALAPAYL 117

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AVTGT+GKS+V + + ++ Q +G  +F  G                P   YL  
Sbjct: 118 HT-PVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGGNLGV------------PLAQYL-- 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  Q    V +E SS  LD       +   G   N+  DH+D +   QAY  +K R
Sbjct: 163 ----AGPQEADWVVLEVSSFQLDTA--GAFRPQIGVLLNISPDHLDRYPDYQAYAASKWR 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF      +  A++   D     +   A     R+    +  +     +  AI +K  +T
Sbjct: 217 LFAHQRATD-WAVLNGADPEIARLAVAAPPVARRL---DFNCQPQPEGQATAIDDKITIT 272

Query: 293 -------------------------ISVEGKDFDFLFP-----------------LPGEF 310
                                    ++  G+   +  P                 L  E 
Sbjct: 273 GGAWSASTPAGARLLVNVYSLLKQPVTGPGERLQWSTPAAGADPIPPEVYEPGPELAVEP 332

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA  A       G  S+ V+  L     +P R   V + +  G  Y D +  +N + 
Sbjct: 333 NLQNAQAAILAARLAGCSSSAVVGGLRAFKSLPHRLALVASIA--GVDYYDDSKATN-IG 389

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            ++  ++ +     +++   G D+    + ++  +   +  + ++     R
Sbjct: 390 AVVSALQGLAQP--VILIAGGLDKGGDYKLLLPVLKEKVRAVVLIGSARAR 438


>gi|293400553|ref|ZP_06644698.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305579|gb|EFE46823.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 437

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 15/217 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K      TN+  DH+DY++  + Y +A    F   + K    +++ DD   + +     +
Sbjct: 165 KPQYAIITNIELDHVDYYKDMEDYRDA-FETFANQVKKG--IVLFGDDQEVRRL-----H 216

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAA 319
              + L  G Q     ++ V  I N++ ++  V  K      F  P  G+  ++N+L   
Sbjct: 217 VKTKHLYYGLQ-DDNDVQAVHVIQNEEGMSFDVLYKKAYFGSFKLPFVGKPLLWNSLGVI 275

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-T 378
            L I  G+  A++ E L     V  RF        G     DYAH   +++ +++  R  
Sbjct: 276 ALGIMEGLQPAVLQEGLASFPGVKRRFTI--EEKNGNVYIDDYAHHPTAVKYMIEAARIK 333

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +II +F                  LD AD   +
Sbjct: 334 YPDKKIIAIFKPDRYSRIYYFMDRFAQELDQADETYL 370


>gi|170288512|ref|YP_001738750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga sp.
           RQ2]
 gi|226722953|sp|B1L9R9|MURD_THESQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|170176015|gb|ACB09067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga sp.
           RQ2]
          Length = 430

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 143/419 (34%), Gaps = 70/419 (16%)

Query: 82  FSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            S  I+ +T I+ + ++R       L LF   +    P+ ++ +TGT GKS+  + +  +
Sbjct: 67  VSPGIKPDTSIIKLLSSRGAKLSTELQLFLDNVD---PKKVVGITGTDGKSTATALMHHV 123

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             R G  +F  G   T +                             +  +E SS  L  
Sbjct: 124 LSRRGFKTFLGGNFGTPAV--------------------EALEGEYDYYVLEMSSFQLFW 163

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +        N+  DH+D+H + + Y ++K  L    L  E    +Y         
Sbjct: 164 SERPYLSNF--LVLNISEDHLDWHSSFEEYVDSK--LKPAFLQTEGDLFVYNKHIERLRN 219

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           ++   +      +                +   +  + V GK +      P +    N L
Sbjct: 220 LEGVRSRKIPFWT--------------GENFATERELIVHGKKYTLPGNYPYQ-TRENIL 264

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             + L + +  +    LE L     +P R E++G    G   Y D   T  S   +L  +
Sbjct: 265 AVSILYMEMFNELESFLELLRDFKPLPHRMEYLG-QIDGRHFYNDSKAT--STHAVLGAL 321

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                   +V+  CG  + +     + K +  L  + +            +I  E+   +
Sbjct: 322 SNFDK---VVLIMCGIGKKENYSLFVEKASPKLKHLIMF----------GEISKELAPFV 368

Query: 437 PGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                    N  EA   A+E+  K DV++++  G  +  +  N  K+     +  RE+ 
Sbjct: 369 GKIPHSIVENMEEAFEKAMEVSEKGDVILLS-PGGASFDMYENYAKR----GEHFRELF 422


>gi|291550011|emb|CBL26273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
           torques L2-14]
          Length = 457

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 111/293 (37%), Gaps = 26/293 (8%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L ++  + +  E SS  L+   +   +    +  N+  DH++ H T +AY  AK  + + 
Sbjct: 159 LQTREDSVIVAEMSSFQLE--TIQTFRPKVSAILNITPDHLNRHHTMEAYIEAKENIAKN 216

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K++  + Y DD           N   +VL    Q     + +        Q+ +++ 
Sbjct: 217 QTEKDTCVLNYEDDVT----KVFGENVKSKVLYFSSQ----RILEEGIYLENGQIVLAMN 268

Query: 297 GKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           G+           + G     NA+ AAG+  A G+   ++   L++   V  R E+V   
Sbjct: 269 GEKTPVCHVDELNILGTHNHENAMAAAGMAAAYGVPVDVIRRTLKEFQGVEHRIEYVAE- 327

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            + G +Y + +  +N  +  +K I+ +   R  V+ G G D+D      +      +  +
Sbjct: 328 -KNGVVYYNDSKGTNP-DAAIKGIQAM--NRPTVLIGGGYDKDSAYDEWIDSFDGKVKKL 383

Query: 413 AIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++          +KI      HG           EA    +E     D +++
Sbjct: 384 VLL------GATRDKIAETARAHGFEDIEMADTFEEAFAKCVENAKPGDAVLL 430


>gi|283456398|ref|YP_003360962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           dentium Bd1]
 gi|283103032|gb|ADB10138.1| murD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium dentium Bd1]
          Length = 480

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 124/377 (32%), Gaps = 57/377 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G      S                  
Sbjct: 103 PARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVGNIGKAVS------------------ 144

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H  D + L   + TN+  DH+D+H     Y   K ++
Sbjct: 145 -HAAVDPANDVLCVELSSFQL--HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAKV 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQ-----------GKFIHLKK 281
           F          +  ADD    E+ +RA  A  CR +                G  + +  
Sbjct: 202 FHR---ASKALVYNADDIRVTELAERAETAEGCRRIGFTLHKPEAGQIGIVDGWIVDMSG 258

Query: 282 VCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           V      Q V ++   +               + +AL A  L + +G+D    +  L++ 
Sbjct: 259 VAGGEPDQPVKVAKIADFTHLTEPDGTVYPHLLADALTALALALGLGVDKGTAIAALQRF 318

Query: 340 HVVPGRFEFVGT--NSRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                R + V T   S GG I +VD +  +N+               + +    G  +  
Sbjct: 319 TPGGHRIQTVATAHESDGGIIRFVDDSKATNAHAAKASLNSFADKSVVWI--AGGLAKGS 376

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGN----RIEA 448
               ++   A  +    I+       ED + +        P      I+  +       A
Sbjct: 377 RFERLVADQAHTIKAAVII------GEDQQPMLDAFKASAPQIPLTVIDPADKSTVMARA 430

Query: 449 IRTAIEMLNKQDVLVVA 465
           +  A       DV+++A
Sbjct: 431 VNAAGAYAESGDVVLMA 447


>gi|208778922|ref|ZP_03246268.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella novicida FTG]
 gi|208744722|gb|EDZ91020.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella novicida FTG]
          Length = 456

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 101/285 (35%), Gaps = 22/285 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI- 293
            ++           DD   K +     +   +V S       + +       +  +  + 
Sbjct: 211 RKMSSTAKIIYNAKDDNVQKIISMGCWSELVKVNS------DLGISITKHTLDYSKFELC 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + G   +  + L GE    NA+ A  +   + I   +V   LE    V  R E V ++ 
Sbjct: 265 DINGNSVEVSWGLIGEHNALNAMSAYAVAKQLNISDEMVKGALESFRGVKRRLE-VLSHQ 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 324 DNITLYDDFAHHPTSIKLTLEAVRNKAKDAYVVALIDPRSNTMRQ 368


>gi|269795576|ref|YP_003315031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter
           keddieii DSM 10542]
 gi|269097761|gb|ACZ22197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter
           keddieii DSM 10542]
          Length = 487

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 142/430 (33%), Gaps = 62/430 (14%)

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            G + +V S  +    Q F     +  P+           L         P   LA+TGT
Sbjct: 53  AGFDVVVASPGWPPTSQVFLDAAAAGVPVW--SEVELAWRLRVPTASTGQPAPWLALTGT 110

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  + +  G  +  +G                         +  +    + 
Sbjct: 111 NGKTTTVEMLLSVLEADGRRAAAVGNVG-------------------RPLVEAVVDPEIE 151

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +++E SS  L  H    +  + G+  N+  DH+D+H T + Y  AK ++F +       
Sbjct: 152 VLAIELSSFQL--HFTSSMSPLVGAVLNVAADHLDWHGTFEEYAAAKGKVFHQAQV---A 206

Query: 244 AIIYADDAYSKEVMKRA---HNAGCRVLSVGYQG-------------KFIHLKKVCAIHN 287
            +    D  ++ +++ A     A    ++VG  G             +  HL       +
Sbjct: 207 CVYNVADPVTERLVQDADVVDGARAVGVTVGAPGRSELGLVEGVLCDRAFHLPADDPRRH 266

Query: 288 KQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +    +    +               V++AL AA +  A G+++  V E L        R
Sbjct: 267 QSAAELGTLDDLGHLAGPDGSVPSHVVFDALAAAAMARAFGVEARAVREGLRAFRPGAHR 326

Query: 346 FEFV----GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              V         G   +VD +  +N+               + V    G  +      +
Sbjct: 327 IVTVAQVPAVEGEGTVAFVDDSKATNAHAAAASLGGFAPGTVVWV--AGGLAKGATFDDL 384

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRA------EIIHGIPGFIEKGNRIEAIRTAIEM 455
           +   A  L  + ++  D+    D     A      E+  G  G +       A++TA +M
Sbjct: 385 VRDRADRLRAVVLIGTDHRGLADALARHAGEVPVVEVDPGDTGTV----MQRAVQTAHQM 440

Query: 456 LNKQDVLVVA 465
               D +++A
Sbjct: 441 ARPGDTVLLA 450


>gi|212715556|ref|ZP_03323684.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660923|gb|EEB21498.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
          Length = 480

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 123/377 (32%), Gaps = 57/377 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G      S                  
Sbjct: 103 PAQWIGITGTNGKTSTTEMTSEMLTACGLTAPAVGNIGKAVS------------------ 144

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H  D + L   + TN+  DH+D+H     Y   K ++
Sbjct: 145 -HAAVDPANDVLCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIDNYAADKAKV 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSV----------GYQGKFIHLKKV 282
           F  +   +   +  ADD     +   A  A  CR +            G +  +I     
Sbjct: 202 FHRV---KKALVYNADDERVTRLAFAAETAEGCRKVGFTLSEPQDGQIGVKDGWIVDMSG 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            A           E  +F  L           + +AL A  L + +G D    +  L++ 
Sbjct: 259 IAGGKPGTPEQVAEVSEFTHLTEPDGTVYPHLLADALTALALVLGLGADKEKAIASLKRF 318

Query: 340 HVVPGRFEFVGTN--SRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                R + V T     GG I +VD +  +N+               + +    G  +  
Sbjct: 319 TPGGHRIQTVATATTQDGGSIRFVDDSKATNAHAAKASLNSFADKSVVWI--AGGLAKGS 376

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNR----IEA 448
               ++ + A  +    I+       +D + I        P      I+  N       A
Sbjct: 377 RFERLVAEQAHTIKAAVII------GKDQQPILDAFAASAPDIPLTIIDPANNDVIMERA 430

Query: 449 IRTAIEMLNKQDVLVVA 465
           +  A E     DV+++A
Sbjct: 431 VDAAGEYAQSGDVVLMA 447


>gi|171742515|ref|ZP_02918322.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
 gi|171278129|gb|EDT45790.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
          Length = 489

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 124/377 (32%), Gaps = 57/377 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G      S                  
Sbjct: 112 PARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVGNIGKAVS------------------ 153

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H  D + L   + TN+  DH+D+H     Y   K ++
Sbjct: 154 -HAAVDPANDVLCVELSSFQL--HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAKV 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQ-----------GKFIHLKK 281
           F          +  ADD    E+ +RA  A  CR +                G  + +  
Sbjct: 211 FHR---ASKALVYNADDIRVTELAERAETAEGCRRIGFTLHKPEAGQIGIVDGWIVDMSG 267

Query: 282 VCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           V      Q V ++   +               + +AL A  L + +G+D    +  L++ 
Sbjct: 268 VAGGEPDQPVKVAKIADFTHLTEPDGTVYPHLLADALTALALALGLGVDKGTAIAALQRF 327

Query: 340 HVVPGRFEFVGT--NSRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                R + V T   S GG I +VD +  +N+               + +    G  +  
Sbjct: 328 TPGGHRIQTVATAHESDGGIIRFVDDSKATNAHAAKASLNSFADKSVVWI--AGGLAKGS 385

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGN----RIEA 448
               ++   A  +    I+       ED + +        P      I+  +       A
Sbjct: 386 RFERLVADQAHTIKAAVII------GEDQQPMLDAFKASAPQIPLTVIDPADKSTVMARA 439

Query: 449 IRTAIEMLNKQDVLVVA 465
           +  A       DV+++A
Sbjct: 440 VNAAGAYAESGDVVLMA 456


>gi|113954195|ref|YP_729267.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9311]
 gi|123132801|sp|Q0IE55|MURC_SYNS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113881546|gb|ABI46504.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. CC9311]
          Length = 483

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 91/282 (32%), Gaps = 28/282 (9%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TNL  DH D+++         M+ F          +I  DD   KE  +        
Sbjct: 186 GIITNLELDHTDHYRNLDDLIET-MKTFGR---GCKRLLINHDDPILKEHFQADACWSVH 241

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAI 325
            +    +        V    ++       +G+       PLPG   + N + A   C   
Sbjct: 242 HV----ETADYAALPVQLDGDRTIADYFEQGQKVGQITLPLPGLHNLSNVVAALAACRME 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI------ 379
           G+    +L  + +L     RF+F G   +  ++  DYAH  + ++  L   + +      
Sbjct: 298 GVPLEALLLAVTELRSPGRRFDFRG-EWQDRQVVDDYAHHPSEVQATLTMAQLMVQSGRS 356

Query: 380 ----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434
               T  R++ VF         +       AL  AD  ++       E P E I +E++ 
Sbjct: 357 PLPRTPQRLLAVFQPHRYSRTQEFLNAFAQALVSADALVLAPIYGAGEQPIEGINSELLA 416

Query: 435 G-------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                              E      +     D+++  G G 
Sbjct: 417 RSIRLIDPNQPVFVASTMEELAGLVKQHSQPDDLILAMGAGD 458


>gi|89897956|ref|YP_515066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           felis Fe/C-56]
 gi|122063241|sp|Q255W7|MURD_CHLFF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89331328|dbj|BAE80921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           felis Fe/C-56]
          Length = 419

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 134/382 (35%), Gaps = 73/382 (19%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              R + PI  V + +       S  + ++P   L +TG++GK++   F+  +    G+S
Sbjct: 78  EAKRRDIPI--VTDVQLAFQ---SPEFYQYPS--LGITGSTGKTTTVLFLVHLLHSLGIS 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +F +G                         L  +  +GV    VE SS  L +       
Sbjct: 131 AFAMGNIG-------------------FPILQAMYQKGVRV--VEISSFQLTEQEQKIPV 169

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L   +  N+  +H+DYHQT  AY  AKM +        +  + + D  +S E +    + 
Sbjct: 170 LSGAAILNISENHLDYHQTLHAYSEAKMNI--------AKCLQWPDSLWSGEGVSSGRSY 221

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                         + +++ ++ +K                         N   A  L  
Sbjct: 222 ------------LEYTEEIDSVLDKGGA------------LKPLYLHDRNNYCAAYALAK 257

Query: 324 AI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            +  +     L+ ++     P R E++G       I    A T +S+E  L  ++     
Sbjct: 258 EVTSVPLEAFLQAVQTFEKPPHRIEYLGEKDGVRYINDSKATTMSSVEKALMAVKE---- 313

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             ++V   G +++     ++  +   +  I          E  ++I   +   +P   + 
Sbjct: 314 -NVIVIMGGRNKESNFTSLIPVLTQTVKHIV------AMGECRKEIAQALSSSLP-LTQA 365

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +  EA+  A  +    DV+++
Sbjct: 366 RDLQEAVSIAQSIAQPGDVILL 387


>gi|168215544|ref|ZP_02641169.1| FolC bifunctional protein [Clostridium perfringens NCTC 8239]
 gi|182382177|gb|EDT79656.1| FolC bifunctional protein [Clostridium perfringens NCTC 8239]
          Length = 440

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 137/386 (35%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +G                   I+    D        
Sbjct: 40  KFIHIGGTNGKGSTTAMISSVLKEAGFKVGMYTSPYLEEFEERIQINGENIDKDDLAILM 99

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLDG---IKLIA 206
             + KA+  +   G    +       L  +                  RLD    +    
Sbjct: 100 GDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGGRLDATNVVLPEV 159

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    T +     K  + +  +P     I Y  +  +  V+K   N  C
Sbjct: 160 VVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVP----VISYPQEEKALNVIKERCNELC 215

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L V    + I    +    + Q++ +SV  +       L G+ QV N LVA    I +
Sbjct: 216 CNLEV-VNTEDIRNIIIDKEKHVQKIEVSVGDEILKIDLGLLGDHQVKNFLVALKTLIKL 274

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                 I +  + E  + +  + GR E +        + +D AH  + +  +  +I    
Sbjct: 275 RNNGVNISNESIKEGFKNVRWI-GRMEVLNET---PLVVIDGAHNIDGIRNLRNSIDKYF 330

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + I +   G   D+    ++ +I   +  + IV   + R+ED E +  ++   +    
Sbjct: 331 NFKNITLIL-GVLGDKQVDEMVEEITKGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVF 389

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  EA   A  + N+ D+L++ G
Sbjct: 390 KFKDYKEAYNKAYSLTNEDDLLLICG 415


>gi|119468521|ref|ZP_01611612.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Alteromonadales bacterium TW-7]
 gi|119448029|gb|EAW29294.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Alteromonadales bacterium TW-7]
          Length = 455

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 94/299 (31%), Gaps = 22/299 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  I + +GL    +     I    Q+  ++         
Sbjct: 101 QNSWVLAVAGTHGKTTTASMLAWILEYAGLKPGFL-----IGGIVQNFGVSAKVGETPFF 155

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +                 H L                NL  DH D      A       
Sbjct: 156 VIEADEYDTAFFDKRSKFVHYL---------PRTLILNNLEFDHADIFDDLNAIKKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    LP     I    D   ++V+ +   +    L +         + +    ++  V 
Sbjct: 207 LM-RTLPHSGKVIWPKQDKALEDVILQGLWSESETLGI-----DWGYELIKPDGSEFNVL 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ E +     +   GE  V NA++A      +GI  +  +E L +      R E    +
Sbjct: 261 LNNE-RQGTVNWGAIGEHNVKNAIMAIAAARHVGIAVSHSIEALAEFISPKRRMEL-KAD 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
               ++Y D+AH   +++  L  +R       I+                  +   LAD
Sbjct: 319 INSIKVYDDFAHHPTAIKTTLAGLRAKVGNEKIIAILEPRSNTMKMGVHQHTLLASLAD 377


>gi|306822428|ref|ZP_07455806.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|309802475|ref|ZP_07696581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553973|gb|EFM41882.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|308220875|gb|EFO77181.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
          Length = 480

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 124/377 (32%), Gaps = 57/377 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G      S                  
Sbjct: 103 PARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVGNIGKAVS------------------ 144

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H  D + L   + TN+  DH+D+H     Y   K ++
Sbjct: 145 -HAAVDPANDVLCVELSSFQL--HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAKV 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQ-----------GKFIHLKK 281
           F          +  ADD    E+ +RA  A  CR +                G  + +  
Sbjct: 202 FHR---ASKALVYNADDIRVTELAERAETAEGCRRIGFTLHEPEAGQIGIVDGWIVDMSG 258

Query: 282 VCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           V      Q V ++   +               + +AL A  L + +G+D    +  L++ 
Sbjct: 259 VAGGEPDQPVKVAKIADFTHLTEPDGTVYPHLLADALTALALALGLGVDKGTAIAALQRF 318

Query: 340 HVVPGRFEFVGT--NSRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                R + V T   S GG I +VD +  +N+               + +    G  +  
Sbjct: 319 TPGGHRIQTVATAHESDGGIIRFVDDSKATNAHAAKASLNSFADKSVVWI--AGGLAKGS 376

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGN----RIEA 448
               ++   A  +    I+       ED + +        P      I+  +       A
Sbjct: 377 RFERLVADQAHTIKAAVII------GEDQQPMLDAFKASAPQIPLTVIDPADKSTIMARA 430

Query: 449 IRTAIEMLNKQDVLVVA 465
           +  A       DV+++A
Sbjct: 431 VNAAGAYAESGDVVLMA 447


>gi|94266852|ref|ZP_01290512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
 gi|93452482|gb|EAT03081.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta
           proteobacterium MLMS-1]
          Length = 524

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 134/408 (32%), Gaps = 80/408 (19%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           DGH   P+  A   +AIVVS    L         R+  PI+            A      
Sbjct: 70  DGHS--PELFAA-VDAIVVSPGVPLDIPALKEAARAGVPII---------GELALAPAYL 117

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   ++AVTGT+GKS+V + + ++ Q +G  +F  G                P   YL  
Sbjct: 118 HT-PVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGGNLGV------------PLAQYL-- 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  Q    V +E SS  LD       +   G   N+  DH+D +   QAY  +K R
Sbjct: 163 ----AGPQEADWVVLEVSSFQLDTA--GAFRPQIGVLLNISPDHLDRYPDYQAYAASKWR 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAH------NAGCRVLSVGYQGKFIHLKKVCAIH 286
           LF      +  A++   D     +   A       +  C+    G          +    
Sbjct: 217 LFAHQRATD-WAVLNGADPEIARLAVAAPPVARRLDFNCQPRPEGQATAIDDKITITGGA 275

Query: 287 NKQQV----------------TISVEGKDFDFLFP-----------------LPGEFQVY 313
                                 ++  G+   +  P                 L  E  + 
Sbjct: 276 WSASTPAGARLLVNVYSLLKQPVTGPGERLQWSTPAAGADPIPPEVYEPGPELAVEPNLQ 335

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A       G  S+ V+  L     +P R   V + +  G  Y D +  +N +  ++
Sbjct: 336 NAQAAILAARLAGCSSSAVVGGLRAFKSLPHRLALVASIA--GVDYYDDSKATN-IGAVV 392

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             ++ +     +++   G D+    + ++  +   +  + ++     R
Sbjct: 393 SALQGLAQP--VILIAGGLDKGGDYKLLLPVLKEKVRAVVLIGSARAR 438


>gi|331092378|ref|ZP_08341204.1| hypothetical protein HMPREF9477_01847 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401402|gb|EGG80988.1| hypothetical protein HMPREF9477_01847 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 432

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 71/394 (18%), Positives = 139/394 (35%), Gaps = 51/394 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--------I 147
           ++TR+FL    +    K    I+ V GT+GK SV +++Q +    G  +          I
Sbjct: 23  EHTREFLVRLGNPEKNK---KIIHVAGTNGKGSVCAYLQAMLLADGKKTGMFISPHLEKI 79

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---------- 197
                I      +     +  ++   +  +   G+ H S      G+  +          
Sbjct: 80  NERIVIQGEEISDEKFLKAFHFVMDTIKEMKKDGIAHPSYFEFLFGMGMYAFSEADVEYI 139

Query: 198 --------RLDGI----KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
                   RLD        I    T++  DH D    T +     K  + +E +P     
Sbjct: 140 ILETGLGGRLDATNSIQHPIMTVITSITLDHTDILGDTIEKIAAEKAGIIKEGIP----V 195

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   D  Y+  + KRA       + +       +             +++   K   +  
Sbjct: 196 VCMGDREYTHVIEKRAEKLHSPCIKISKNA---YEIIESTDKYIDFFSVNAYDKYVTWKL 252

Query: 305 PLPGEFQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              G +QV NA++A      +     D +L    L  +    GR E +        I VD
Sbjct: 253 HNSGVYQVENAMLAIKALEYLFPEKEDMSLWRRALANVVW-QGRMEEIMPG-----IVVD 306

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            AH   ++E  +K+++ +   + +++F    D+D  K      + +      I    + R
Sbjct: 307 GAHNIGAVEAFVKSVKQMKDTKNVILFSSVSDKDYEKMIQYLCLHMKAECYIITEIPDTR 366

Query: 422 SEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIE 454
            E+PE++       +    I + + ++A+  A+E
Sbjct: 367 GEEPEQLAEVFRKYVKSEVIVEPDLLKALSCAVE 400


>gi|297559871|ref|YP_003678845.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844319|gb|ADH66339.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 483

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 149/450 (33%), Gaps = 70/450 (15%)

Query: 50  VGNKE---DGHLF------IPQAIAQGAEAIVVSSAYSLQDF----SATIRSNTPILVVD 96
            G +    DG           +  A+GAE ++  +           S   R ++P+LV  
Sbjct: 43  RGARVTVVDGRDDDTVRPVADRLRAEGAEVVLGDTPLPADCDLVVTSPGWRPDSPLLV-- 100

Query: 97  NTRKFLSLFA-------SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             R   +          +       +  LAVTGT+GK++    ++ + +  G  +  +G 
Sbjct: 101 --RAAEAGIEVIGDVELAWRLKPADQVWLAVTGTNGKTTTVRMLEAMLRADGRDALAVGN 158

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             T            P      +            ++VE SS  L  H    ++  A + 
Sbjct: 159 VGT-----PVVEAVQPDAGGRFR----------EVLAVELSSFQL--HWSSSLRPHAATV 201

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+  DH+D+H     Y  AK R++       +  ++   DA+S  + +   +    ++ 
Sbjct: 202 LNIAPDHLDWHGGLDPYARAKGRIYA----PGTLRVVNTADAWSVRLAEEDGDPHTPLVG 257

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL-----PGEFQVYNALVAAGLCIA 324
                       V       +  +       + L  L          V NAL AA L  +
Sbjct: 258 FRLDTPRAGEVGVVEDLLVDRAFVEDPHSSAEELATLSDVRPAAPHNVANALAAAALARS 317

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+    V   L      P R  FV T   GG  YVD +  +N          ++ S   
Sbjct: 318 VGVYPGSVRAGLAAFDPEPHRIAFVATA--GGVDYVDDSKATNP----HAAAASLGSYPS 371

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443
           +V    G  +      +    A  L    ++  D  R  +     AE   G+P    +G 
Sbjct: 372 VVWIAGGLLKGAEVDDLAAMAADRLRAAVLIGADRARLREA---LAEHAPGVPVVEVEGP 428

Query: 444 --------NRIEAIRTAIEMLNKQDVLVVA 465
                   + +     A  +  + D +++A
Sbjct: 429 ADGDGTVMDAVV--AAAASLAEEGDTVLLA 456


>gi|157413927|ref|YP_001484793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388502|gb|ABV51207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 478

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 94/274 (34%), Gaps = 33/274 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + +TGT+GK++V   +  I   +GL +   G   T                 L K   
Sbjct: 121 NWIGITGTNGKTTVTHLLSHILCDTGLYAPFAGNIGTP----------------LCKYAY 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              ++ +  V  E SS+ ++      +K   G +T    DH++ H+T + YFN K  L  
Sbjct: 165 SKKTEKIDWVVAELSSYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSL-- 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L K    I   DD   +              S             C      Q  I  
Sbjct: 221 --LEKSDFRIYNYDDKNLRNHYSSLSRGVWITTSFDKSN-----FIQCDYWIDDQAFIVE 273

Query: 296 EGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            GK       F L G   + N L+       +G+    + + L     +P R E +  N 
Sbjct: 274 RGKKLFKLEHFSLKGMHNLQNLLLVIAAARKVGLSGKEIKDSLSNYKQLPHRMETIYKND 333

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               I    A   +S    + +I     G+II++
Sbjct: 334 DLEIINDSKATNFDSSIAGISSIE----GQIIII 363


>gi|157828435|ref|YP_001494677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933147|ref|YP_001649936.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. Iowa]
 gi|157800916|gb|ABV76169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908234|gb|ABY72530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           rickettsii str. Iowa]
          Length = 500

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 121/361 (33%), Gaps = 82/361 (22%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I +  +     +              +A+TGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVNIAKSFNIPITSDIDLLFAK-------SKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G                     ++   +  S  G     +E S
Sbjct: 120 ALISHILNSSGLDYPVAGNIG------------------VSALQAKASKDG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+  + +ES A+I  D+
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMPCYIAAKSKIFDR-MDQESYAVINIDN 215

Query: 251 AYSKEV-MKRAHNAGCRVLSVG-------------------------------------- 271
            Y +EV +K       +++                                         
Sbjct: 216 DYCREVFIKLQQEQRIKLIPFSVTQILENGISVVDDKISANFFDDISFELQHNSESFRQD 275

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIAIG 326
            +QG+    + +    ++Q +  S+      +  P            N   +  +   IG
Sbjct: 276 EFQGEPAEPECIKIREHRQNLHNSLVSSFMHYTVPFNKNLQGVHNCENIAASYAVAKIIG 335

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITS 381
           ++   +LE +     +P R +++G+ +     + + +  +N++  +     L NI  +  
Sbjct: 336 VEPKKILESISSFQSLPHRMQYIGSINNIS--FYNDSKATNAISAVQSIKALDNIYWLAG 393

Query: 382 G 382
           G
Sbjct: 394 G 394


>gi|47779372|gb|AAT38601.1| predicted UDP-N-acetylmuramate: L-alanyl-diaminopimelate ligase
           [uncultured gamma proteobacterium eBACHOT4E07]
          Length = 432

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 99/272 (36%), Gaps = 26/272 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            N+ A++GT GK++ +  +  I    G     +     IS    ++      PI++ +A 
Sbjct: 101 RNVFAISGTHGKTTTSYMLAHIFLDQGREIGYL--VGGISDDFDNSACLGKDPIFVIEAD 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+           S                   N+  DH D     +        L 
Sbjct: 159 EYDSAFFDKRSKFIHYS------------PTNLIINNIEFDHADIFNDIEDVKKQFHHLI 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + ++      I + DD+ SKEV+++     C  + +   G     +    I + +   ++
Sbjct: 207 K-IIKSSGNIIYFDDDSTSKEVIEK--GIWCSKIGINSNGVKADFESKELIIDDEIFQLN 263

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL GE    N + +       GI     +  L+K   V  R +F+   S 
Sbjct: 264 --------ELPLIGEHNFKNYVCSILAAKLEGISETESINSLKKFKGVKRRMDFIKEIS- 314

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           G RIY D+AH   ++++    IR   S + I+
Sbjct: 315 GIRIYDDFAHHPTAIKLSCSAIRNKYSDKKIL 346


>gi|291536441|emb|CBL09553.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis M50/1]
          Length = 454

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 104/276 (37%), Gaps = 27/276 (9%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++       +  N+  DH+D H T +AY  AK  + +    +++  + Y D    + 
Sbjct: 170 LETMETFHPSVSAILNITPDHLDRHHTMEAYIRAKESITKCQTKEDTCVLNYED----EI 225

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-------FPLPG 308
           + K A      VL    +      + +      Q+ TI + GK+ +           L G
Sbjct: 226 LRKFAETLKVNVLFFSSK------RPLEEGIYLQENTIWIAGKETERQRLIDVGELKLLG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N + A+G  + +G    +V   L++   V  R EFV      G +Y + +  +N 
Sbjct: 280 IHNYENVMAASGTALCMGAPIDVVQRVLKEFWGVKHRIEFV--RDLQGVLYYNDSKATNP 337

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  ++ I ++    +++  G G D++      +      +  + ++      ++D   +
Sbjct: 338 -DAAIRGIGSMNRKTLLI--GGGYDKNLEFDAWIESFDGKVKCLLLIGQ----TKDKIAV 390

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A   HG    +      EA+     +    + +++
Sbjct: 391 CAR-KHGFENIVCCDTLNEAVNICYRLAKPGEAVLL 425


>gi|260437302|ref|ZP_05791118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810214|gb|EFF69419.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Butyrivibrio
           crossotus DSM 2876]
          Length = 453

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 22/285 (7%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--KE 241
           +   E SS  L+  R         +  N+  DH++ H T + Y   K  + +      ++
Sbjct: 160 YTVAEISSFQLETIR--EFAPRGSAILNITPDHLNRHYTMENYAAVKESITKNQWKVRED 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              ++  DD   +E  K   N           +G ++  + +     K    +       
Sbjct: 218 DYCVLNYDDKVLREFGKTIKNPVYFSRKEKPSKGAYLDGRIIRYFDGKNDYEVMS----- 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G     N + A  + I  G+   +++  ++    V  R E+V    + G  Y 
Sbjct: 273 VDDMHLFGNHNYENVMAAIAMTIEAGVPLNIIINVIKDFMGVEHRIEYV--RDKNGVRYY 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           + +  +N  +  +K +  ++   I++  G     +  +       A D     +V     
Sbjct: 331 NDSKGTNP-DSSIKALEAMSRPTILIAGGYDKHSEFDEFIE----AFDNKVKLMVLL--- 382

Query: 421 RSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  +KI    + HG    I+  +  +A++   E     DV+++
Sbjct: 383 -GQTADKIEETAVRHGFTNIIKTDSLEKAVKICAENAVSGDVVLL 426


>gi|218778063|ref|YP_002429381.1| FolC bifunctional protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759447|gb|ACL01913.1| FolC bifunctional protein [Desulfatibacillum alkenivorans AK-01]
          Length = 444

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 133/383 (34%), Gaps = 48/383 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSF--------QIGPTSTISSFAQDN------- 160
             + + GT+GK SVA     I Q +G             I    T++     +       
Sbjct: 44  QCIHIAGTNGKGSVAQNTASILQAAGYKVGVYTSPHLVHINERFTVNGRPISDDEVLEAY 103

Query: 161 ----------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                     R  T      A AL      GV +  +E    G      + +K      T
Sbjct: 104 QAVKSVSGLERHATFFEYTTAMALYAFDRAGVDYAVMETGM-GGRLDATNVLKPELCIIT 162

Query: 211 NLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+  +H  Y   T       K  + +  +P  +           K V K A  +   +  
Sbjct: 163 NISVEHEMYLGNTIAQIAYEKAGIIKPGVPVVTGVRQP---DAIKAVEKAAAESKAPLYR 219

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI---- 325
           +G   K   L+        Q      +         L GE+Q+ NA +A   C A+    
Sbjct: 220 MGKDFKTRRLQGGGFNFYGQ------DHAWKGLQCRLKGEYQIPNASLALAGCQALTKRG 273

Query: 326 -GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             I        LE++    GR E +  +     + +D AH   +++++ K +    + R 
Sbjct: 274 AKITEEQAKAGLEQVKWP-GRLETIQES---PMVILDGAHNLAAMKVLTKYLAETFADRD 329

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKG 443
           + V       D      M  +   LA   I+T     R+ + +++   I +    F+EK 
Sbjct: 330 VTVITG--FLDDKPYKKMLPMLEALAAKIIITRPKIGRAVETKELTPLIRNKKDRFVEKP 387

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +  EA++ A+E     DV+VVAG
Sbjct: 388 SVEEAVKYALENARDTDVIVVAG 410


>gi|254373958|ref|ZP_04989440.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Francisella
           novicida GA99-3548]
 gi|151571678|gb|EDN37332.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Francisella
           novicida GA99-3548]
          Length = 456

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 103/284 (36%), Gaps = 20/284 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +P  +  I  A D   ++++       C    V              +   +     
Sbjct: 211 RK-MPSTAKIIYNAKDDNVQKIISMG----CWSELVKVNSDLGISITKHTLDYSKFELCD 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G + +  + L GE    NA+ A  +   + I   +V + LE    V  R E V ++  
Sbjct: 266 INGNNVEVSWGLIGEHNALNAMSAYAVAKQLNISDEVVKDALESFRGVKRRLE-VLSHQD 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 325 NITLYDDFAHHPTSIKLTLEAVRNKAKAAYVVALIDPRSNTMRQ 368


>gi|119717289|ref|YP_924254.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nocardioides
           sp. JS614]
 gi|119537950|gb|ABL82567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nocardioides sp.
           JS614]
          Length = 488

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 147/448 (32%), Gaps = 65/448 (14%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYG-KHPENILAVTGTSGKSSV 129
               L   S   + + P+L     R+         A RL    H    L VTGT+GK++ 
Sbjct: 77  EDVDLLVTSPGWKPSAPLLAQARARRIPIWGEVELAWRLRDPDHRTPWLCVTGTNGKTTT 136

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL S  +G                     L    + +  +    ++VE 
Sbjct: 137 VQMLDSILRAAGLRSIAVGNVG------------------LPIVEAVMDPEPYDVLAVEL 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L  H  D +   A +  N+  DH+D++ +  AY   K R++E     +   +    
Sbjct: 179 SSFQL--HYTDSMSAEAAAVLNVAEDHLDWYSSFGAYAADKGRIYER---AQKACVYNVA 233

Query: 250 DAYSKEVMKRA---HNAGCRVLSVGYQG--------KFIHLKKVCAIHNKQQVTISVEGK 298
           D  ++ +++ A     A     ++G  G          +  +      +     +     
Sbjct: 234 DPETERLVREADVVEGARAVGFTLGMPGVGMVGLVEDILADRAFIEQRDTSAAELCTISD 293

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                        + NAL AA L  A G+    V + L        R       + GG  
Sbjct: 294 LALHSPGGAAPHNIANALAAAALARAHGVSQGAVRDGLRAFRP--DRHRIAVVGAAGGVT 351

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +VD +  +N        +         VV+  GG         + +   D     ++   
Sbjct: 352 WVDDSKATNPHAAQSSLLAYEP-----VVWIAGGLAKGAHFDDLVRAVRDRLRGVVLL-- 404

Query: 419 NPRSEDPEKIRAEIIHGIPG---FIEKGNRIE------AIRT----AIEMLNKQDVLVVA 465
                D + I   +    P     + + +  E      A+      A E+    D +++A
Sbjct: 405 ---GRDRDVIAGALSRHAPDVPVIVVEDDETEGDHGGRAMERVVGAAAELARPGDTVLLA 461

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
             G  ++ + TN  ++     D +R  L
Sbjct: 462 -PGCASMDMFTNYAERGDAFADAVRRRL 488


>gi|149927202|ref|ZP_01915459.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Limnobacter sp. MED105]
 gi|149824141|gb|EDM83362.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Limnobacter sp. MED105]
          Length = 451

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 116/366 (31%), Gaps = 36/366 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK+S +S +  + Q++GL+   +     +      +        ++ +A 
Sbjct: 91  RKVLAVAGTHGKTSTSSMLAWVLQQAGLNPGFL--IGGVPGGFGVSATLGQGDCFVIEAD 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++                       + +     NL  DH D      A    +    
Sbjct: 149 EYDTAFFDKRSKFVHY------------RPVVAVLNNLEFDHADIFPDLAAI-ETQFHHL 195

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P E   +  A+    + V+KR       V      G          +    +  + 
Sbjct: 196 VRTVPSEGRVVCPANTESLERVLKR--GCWTPVARFSANGD--EAPWQAHVLGASRFEVL 251

Query: 295 VEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + G+      +   G   V NAL       A+G+  A     L     V  R E  G  +
Sbjct: 252 MHGEVKGQVEWDWSGLHNVNNALAVIAAAHAVGVKVADACNALSAFPGVKRRMELRGEAA 311

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT----------ITSGRIIVVFGCGGDRDQGKRPIMG 403
            G R+Y D+AH   ++   L+  +             +GR+I +F    +  +       
Sbjct: 312 -GVRVYDDFAHHPTAIATTLEGAKARMAEIALANGQPAGRLIALFEPRSNTMKMGTLAQA 370

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-EAIRTAIEMLNKQDVL 462
             A      A+V      +   +    + +  +   +   + + E I   +      D +
Sbjct: 371 LPASFDEAQAVVC----YTAGIQWNVRDTLGSVGERLFTSDNLNEVIDHVVSQAQPGDWV 426

Query: 463 VVAGKG 468
           V    G
Sbjct: 427 VAMSNG 432


>gi|171913321|ref|ZP_02928791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 457

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 102/305 (33%), Gaps = 29/305 (9%)

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   T +      ALS ++  G T+  +           +   +     + N   D
Sbjct: 141 MFNGCGHRTIACGNYGHALSEVAVSGETYDLLTVEVSSFQLETITSFRPRVAVWLNFAPD 200

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+D +   +AYF AK R+F+ + P +  AII A +   +           RV++   +  
Sbjct: 201 HLDRYPDNEAYFAAKKRIFDYMTPND-VAIIRAGEPLGE--------LQPRVVTFTTEPD 251

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVL 333
                 V A        I   G+    +  LP      + N + A      +G+    +L
Sbjct: 252 ------VEADFMLYHDRILFRGEKIARVSDLPLHERHNIENQMAALAAGWVMGLAFEDML 305

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           E L        R E V   +    I    A   ++LE  LK+         +V+   G +
Sbjct: 306 EGLSGYEPARHRCEVVSVVNGRSYINDSKATNLHALETCLKSQDA-----PVVLIAGGKE 360

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +     P    I   +  +  +       E  +K+ A     +P   +  + + A+  A 
Sbjct: 361 KGLDYSPFRSLITEKVTALVTI------GEIADKLSALFSDLVPC-RQAPSVVAAVEIAT 413

Query: 454 EMLNK 458
           ++   
Sbjct: 414 QLAAP 418


>gi|255536695|ref|YP_003097066.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342891|gb|ACU09004.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
          Length = 458

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 136/414 (32%), Gaps = 64/414 (15%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVVS+A     F         I +V  + + L+  A        +  +AV GTSGKS+ +
Sbjct: 76  IVVSTAIEDTVFEVQKARELGIPIVKRS-ELLAAIAK------SKKTIAVGGTSGKSTTS 128

Query: 131 SFVQQICQRSGLSSFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + + QI   +G     I   G TS I      N         + +A              
Sbjct: 129 AMLYQILLDAGFDPSIISGAGLTSIIRQGKIGNAAVGKGEWLIIEA-------------- 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAII 246
           + S   + Q+     +   G   N+ +DH +         +  + LF E      S  ++
Sbjct: 175 DESDGSIIQY-----QPEIGLLLNIDKDHQE--------IDELITLFSEFKSNTNSLFVV 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              +  +K +   A N        G++             +   +T  + G+ F      
Sbjct: 222 NQSNTLAKSLSANAAND------FGFEDANAGYSAENFKQDGLLMTFELRGQKFKMNSL- 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V NA  A  +   IG+D     E L K   +  R + +G    G  +  DYAH  
Sbjct: 275 -GRHSVENAAAAIAVAHQIGVDLNTSAESLAKYEGIYRRHQILGQK-NGVWVIDDYAHNP 332

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRD----QGKRPIMGKIALDLADIAIVTDD-NPR 421
                 ++  + +    +I  F   G       +         AL   D   +++     
Sbjct: 333 AKCAASIRACQPLADK-VIAWFQPHGYGPTRFLRNDFVEEIAEALRQQDEIWMSEIFYAG 391

Query: 422 SEDPEKIRA-----EIIHGIPGFIEKGNR---IEAIRTAIEMLNKQDVLVVAGK 467
               + I A     +I           +R   +EA+R     L    VL++ G 
Sbjct: 392 GTAVKDISANDLVEDIRMKGKNASFVEDRNNLLEALR---PKLTPGTVLLLMGA 442


>gi|83719762|ref|YP_441715.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis E264]
 gi|83653587|gb|ABC37650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis E264]
          Length = 470

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 113/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  I + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +   + V+ R       V   G  G +  L     +   ++  + 
Sbjct: 208 VRTVPSVGRLVTNGREDALERVLSR--GCWSDVERFGVDGGWQALPAEDGVPADERFAVY 265

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 266 WRSERVGAVDWHVQGEHNRMNALAAIAAARHVGVPPAQAATALATFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGRENTRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
              +     P   D       + +  +       + + A+  A+       D ++V   G
Sbjct: 385 ADLVFGYGAPSGRDALGWSLPDALAPLGDKARAFDDLHALVKAVTVSARPGDHVLVMSNG 444


>gi|78065168|ref|YP_367937.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. 383]
 gi|77965913|gb|ABB07293.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. 383]
          Length = 449

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 113/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + SGL+   +     I     +  ++           + 
Sbjct: 93  VLAVAGTHGKTTTSSMLAWLLEDSGLNPGFL-----IGGVPLNFGVS-----------AR 136

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 137 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 195

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +        + V+  A      V   G  G +  L     +   ++  + 
Sbjct: 196 VRTVPGVGRIVTNGRSDALERVL--ARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVY 253

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +   +  + + G+    NAL A      +G+  A   E L     V  R E  G + 
Sbjct: 254 SHAERVGEVTWQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEVRG-SV 312

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R    +    I+              +  ++   LAD
Sbjct: 313 DGVTVYDDFAHHPTAIETTIAGLRARIGSENARILAVLEPRSNTMKLGVMKSQLPASLAD 372

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +     P   D     +   +           +    +++ +      D ++V   G
Sbjct: 373 ADLVFGYGAPTGRDALGWNLAEALAPLGEKAHAFDDLHLLVKSVVAAARPGDHVLVMSNG 432


>gi|167618637|ref|ZP_02387268.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis Bt4]
 gi|257137883|ref|ZP_05586145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis E264]
          Length = 504

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 113/358 (31%), Gaps = 24/358 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  I + +GL+   +     +      +   T S  ++ +A  Y
Sbjct: 139 VLAVAGTHGKTTTSSMLAWILEDAGLNPGFL--IGGVPLNFGVSARLTDSSFFVIEADEY 196

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++                       +       NL  DH D      A    +      
Sbjct: 197 DTAFFDKRSKFVHY------------RPRTAILNNLEFDHADIFPDLAAI-ETQFHHLVR 243

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     +    +   + V+ R       V   G  G +  L     +   ++  +   
Sbjct: 244 TVPSVGRLVTNGREDALERVLSR--GCWSDVERFGVDGGWQALPAEDGVPADERFAVYWR 301

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +      + + GE    NAL A      +G+  A     L     V  R E  G +  G
Sbjct: 302 SERVGAVDWHVQGEHNRMNALAAIAAARHVGVPPAQAATALATFRNVKRRMEVRG-SVDG 360

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
             +Y D+AH   ++E  +  +R         I+              +  ++   LAD  
Sbjct: 361 VTVYDDFAHHPTAIETTIAGLRARIGRENTRILAVLEPRSNTMKLGVMKAQLPASLADAD 420

Query: 413 AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            +     P   D       + +  +       + + A+  A+       D ++V   G
Sbjct: 421 LVFGYGAPSGRDALGWSLPDALAPLGDKARAFDDLHALVKAVTVSARPGDHVLVMSNG 478


>gi|167580528|ref|ZP_02373402.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis TXDOH]
          Length = 504

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 113/358 (31%), Gaps = 24/358 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  I + +GL+   +     +      +   T S  ++ +A  Y
Sbjct: 139 VLAVAGTHGKTTTSSMLAWILEDAGLNPGFL--IGGVPLNFGVSARLTDSSFFVIEADEY 196

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++                       +       NL  DH D      A    +      
Sbjct: 197 DTAFFDKRSKFVHY------------RPRTAILNNLEFDHADIFPDLAAI-ETQFHHLVR 243

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     +    +   + V+ R       V   G  G +  L     +   ++  +   
Sbjct: 244 TVPSVGRLVTNGREDALERVLSR--GCWSDVERFGVDGGWQALPAEDGVPADERFAVYWR 301

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +      + + GE    NAL A      +G+  A     L     V  R E  G +  G
Sbjct: 302 SERVGAVDWHVQGEHNRMNALAAIAAARHVGVPPAQAATALATFRNVKRRMEVRG-SVDG 360

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
             +Y D+AH   ++E  +  +R         I+              +  ++   LAD  
Sbjct: 361 VTVYDDFAHHPTAIETTIAGLRARIGRENTRILAVLEPRSNTMKLGVMKAQLPASLADAD 420

Query: 413 AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            +     P   D       + +  +       + + A+  A+       D ++V   G
Sbjct: 421 LVFGYGAPSGRDALGWSLPDALAPLGDKARAFDDLHALVKAVTVSARPGDHVLVMSNG 478


>gi|187932076|ref|YP_001892061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|226711911|sp|B2SDR8|MURD_FRATM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|187712985|gb|ACD31282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 416

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 127/356 (35%), Gaps = 61/356 (17%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AVTG++GKS+V +    + +  G  S  +G   T                
Sbjct: 91  YIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGT---------------- 134

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               AL+ +  +   +  VE SS  +  +  + ++   G   N+  DH+D +Q  + Y  
Sbjct: 135 ---PALNKIGEK-FDYCVVEVSSFQI--NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQ 188

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K+ L                        K +++     +  G +    +     AI+  
Sbjct: 189 SKLNL-----------------------AKFSNDFFVYDVHNGIKYAGEYQIIRGAIYRN 225

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               + +          L GE  + N +V   +   +G+D    ++ ++K   +  R + 
Sbjct: 226 STKLLDI------VETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKI 279

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +      G  Y++ +  +N +   +  + +IT+ + I++   G  +  G   +M K    
Sbjct: 280 I--KKVNGTTYINDSKGTN-VGATIAALNSITNSKNIILLLGGVAKG-GDFSLMIKSLDK 335

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +        D E I + I  G   +    N  +A   A +  N  +++++
Sbjct: 336 YVKYVYI-----YGVDKEYIESYI-KGYCKYQLCNNMKQAFELASQKANSNEIVLL 385


>gi|257898999|ref|ZP_05678652.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257836911|gb|EEV61985.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 496

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 134/346 (38%), Gaps = 34/346 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV          +      TP  +V+++ KFL   +++L       ++A+TG++GK+S 
Sbjct: 81  VIVTEKPIMDPSVT------TPQFIVEDSWKFLLELSAKLRSCFVNPVVAITGSAGKTST 134

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSV 187
              +  + Q              +     ++ +    P+Y++K LS   + +  V+  ++
Sbjct: 135 RMMITHLLQE-----------EKVLENRGNHNVRFAVPLYMSKLLSNPDVLNLEVSVNAL 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            +   G   +    I+      T++G  H+   +  +     K ++FE L  ++  AII 
Sbjct: 184 NSYDTGSMSNL---IQPDIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGL-KQDGIAIIN 239

Query: 248 AD---DAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            D   + +S  V       +   V S+    + + +K++       +V +S  G+D    
Sbjct: 240 GDIGKEEFSILVSAAEKRTSKIVVYSLHDASRAVFVKQISQKREYCEVLVSFFGEDILLK 299

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVD 361
             +  E  + N+L A  +   +  + +  ++  E    +P   E     S  G    ++D
Sbjct: 300 LAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFTFID 359

Query: 362 YAHTSN--SLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             H ++  S++        I+    G  +++ G   D     + I 
Sbjct: 360 DTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIADLGDSTKQIH 405


>gi|302876578|ref|YP_003845211.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
 gi|307687253|ref|ZP_07629699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulovorans 743B]
 gi|302579435|gb|ADL53447.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
          Length = 458

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 69/434 (15%), Positives = 150/434 (34%), Gaps = 49/434 (11%)

Query: 67  GAEAIVVSSAYSLQDF------SATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENIL 118
           GA+ ++     S  D       + ++R ++P L+    +     S          P  I 
Sbjct: 62  GAKLVLGEDYLSYLDGFEVVFKTPSMRIDSPALLKCKEQGAYITSEM-EEFIRYCPGKIF 120

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG+ GK++  + V +I +  G +++  G   T      +    T   +    +   ++
Sbjct: 121 AITGSDGKTTTTTLVYEILKTEGYNTWVGGNIGTPLFTKIEEIKNTDKVVLELSSFQLMT 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q                     + +   + TNL  +H+D H++   Y  AK  +F+   
Sbjct: 181 IQ---------------------LPIEVSAVTNLSPNHLDMHKSMNEYIEAKENIFK-FQ 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +    ++  ++  +  +  +A++      S     +  + K+       ++V       
Sbjct: 219 RENDLLVLNIENDITYNMKDKANSRINFFSSKTEVPQGAYFKENKLYLRDKEV------- 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V N L A  +          + +       V  R EF+     G + 
Sbjct: 272 CKKEELVLMGMHNVENLLTAFLV-TNEDASIESMKKVATTFSGVQHRSEFI-REIDGVKY 329

Query: 359 YVDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           Y D   T        LK        R +++   G D+      +  +    +  + ++  
Sbjct: 330 YNDSIATSPTRAVASLKAFD-----RKVILIAGGYDKHIPFEYLAEEGHEKIKKLILLGV 384

Query: 418 DNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
              + +D  +K+  E    +P +I +    EA   A E+  + D++        +  +  
Sbjct: 385 TKEKIKDVFDKVIKEKTLDLPIYIVQT-LEEAAYKAKEIAEEGDIV-TLSPACASFDMFA 442

Query: 477 NGEKKMSVDCDIIR 490
           N E + +   DI++
Sbjct: 443 NFEIRGNKFKDIVK 456


>gi|329943203|ref|ZP_08291977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|332287783|ref|YP_004422684.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|313848356|emb|CBY17359.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila psittaci RD1]
 gi|325506725|gb|ADZ18363.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|328814750|gb|EGF84740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|328915041|gb|AEB55874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
          Length = 420

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 136/395 (34%), Gaps = 69/395 (17%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVA 130
               L   S  I+++ P++V    R          A +    H    + VTG++GK++  
Sbjct: 58  EDIDLCVRSPGIKTSHPVIVEAKHRGIPVVTDIQLAFQDPEFHRYPSIGVTGSAGKTTTV 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F+  + +  G+S+  +G                         L  +  +G+    VE S
Sbjct: 118 LFLVHLLRSVGISACAMGNIG-------------------FPILQAMYQKGIRV--VEMS 156

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L +  ++   L A +  N+  +H+DYH T QAY  AK  + + L   +SP  ++  D
Sbjct: 157 SFQLAEQEIEIPVLSAATILNISENHLDYHYTLQAYSEAKSNIVKCL---QSPESLWVGD 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                            +S G             + + +++ + ++         L    
Sbjct: 214 G----------------VSFGKS----------YLDSTREINLVLDKGSALKPLYL---H 244

Query: 311 QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              N      L   +  I     LE +      P R E++G       I    A T +S+
Sbjct: 245 DRNNYCAGYALANEVTKIPLEAFLEAVLTFDKPPHRIEYLGEKDGVRYINDSKATTMSSV 304

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  ++       I+V   G ++      ++  +   +  I          E  ++I 
Sbjct: 305 EKALIAVKE-----NIIVILGGRNKGSNFASLIPTLTQTVKHIV------AMGECRKEIA 353

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +        +  +  EA+  A  +    DV+++
Sbjct: 354 QALSSSNLPLTQARDLQEAVNVAQSIAQPGDVILL 388


>gi|212712755|ref|ZP_03320883.1| hypothetical protein PROVALCAL_03852 [Providencia alcalifaciens DSM
           30120]
 gi|212684671|gb|EEB44199.1| hypothetical protein PROVALCAL_03852 [Providencia alcalifaciens DSM
           30120]
          Length = 441

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 140/399 (35%), Gaps = 58/399 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        +   I +V +   F          +    I+A+TG++GKS
Sbjct: 71  ADLIVASPGIALATPQLQEAAKNGIEIVGDIELF--------CREADAPIVAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G+S    G     +                      L +QG +   +
Sbjct: 123 TVTSLVGEMAKSAGISVGVGGNIGIPAV--------------------SLLNQGHSLFVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++  A +  N+  DH+D +    + Y  AK+R+++         I+
Sbjct: 163 ELSSFQLE--TTSSLRAAAATVLNVTEDHMDRYPLGLEQYRAAKLRIYDN----AKHCIV 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFP 305
            A D  +       H    +  S G      +      +   Q +V + V          
Sbjct: 217 NAQDPLTLPH----HQELSQCTSFGLNSGDYYFDTQKRVLVAQGEVVLDV------TKMH 266

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+    NAL A  L   + I     ++ L++   +  RF+ V  N     I    A  
Sbjct: 267 LTGQHNYMNALAALALADTVAIPREASIQVLKEYAGLVHRFQLVLFNRGVRWINDSKATN 326

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S E  L  +     G + ++   G  +      +   IA D   +           D 
Sbjct: 327 VGSTEAALNGL--HVDGTVYLLL-GGDGKSADFSSLKKYIAADNYRLYCF------GRDG 377

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +++   +       +      +++R    +L   D++++
Sbjct: 378 QQLAQLVPE---KSVLTETMEQSMRQIAPLLKSGDMVLL 413


>gi|330964893|gb|EGH65153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 449

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 127/407 (31%), Gaps = 45/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGETPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V+K        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIKM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGELQGAVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL        +G+   L ++ L     V  R E V    RG  IY D+AH   
Sbjct: 277 GLHNVANALATLAAARHVGVVPLLGVQALSAFKSVKRRMEKV-AEVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R       I+            G        ++  AD  +          P
Sbjct: 336 AIATTLDGLRKKVGDAPIIAVVEPRSNSMKLGAHRDGLPESVQQADQVV-------WYAP 388

Query: 426 EKIRAEIIHGIPGFIEKG---NRIEA-IRTAIEMLNKQDVLVVAGKG 468
             +  ++   + G        + +EA I            +V+   G
Sbjct: 389 PNLGWDMAATVAGGTVPALVCDSLEAIIAQVKSQAQPGTHVVIMSNG 435


>gi|270055566|gb|ACZ59059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus]
          Length = 680

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 118/356 (33%), Gaps = 31/356 (8%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           + + + ++   P ++V ++ +     A  +  ++   ++A+TG+ GKSS    +  +   
Sbjct: 81  ESYISNLKFTVPQIIVKDSVQAFKKLAIYIRNQYKNPVVAITGSMGKSSTRMLITSLLS- 139

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                          +      +           L  + +     +    ++    ++  
Sbjct: 140 ------DFDVLENRGNNNVRAAIYNN-------MLKLIKNPDFAVIETSLNAINYLENTA 186

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K      T +G  H    ++ +     K R+FE L      AI+  D  Y+  ++ +
Sbjct: 187 VYLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRVFEGL-ADNGVAIVNNDTLYADYLVDK 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFD---FLFPLPGEFQVYNA 315
           A      VL+   +        V  I +NK  + + +  ++ +   +      E  V N 
Sbjct: 246 ARENTNNVLTYSIKKDSNADLTVDNIKYNKGNIGLLINDQNKETDIYQLNTISEGMVSNT 305

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTS------NS 368
           L +     ++ +      + L+               ++  +   +D  H +      N+
Sbjct: 306 LASMLTLKSLKLPIK--KDLLKNFKPFSKILALKEIQTKSHKLTLLDDTHNASLPAMINA 363

Query: 369 LEMILKNIRTITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +       R  T  +II +      G    +    ++ ++    AD  +  D   R
Sbjct: 364 IRAFNSQTRFYTGNKIIAIGKISDLGHKSSETHLQLVDELESCNADYILCKDIELR 419


>gi|124002774|ref|ZP_01687626.1| Mur ligase family, catalytic domain protein [Microscilla marina
           ATCC 23134]
 gi|123992002|gb|EAY31389.1| Mur ligase family, catalytic domain protein [Microscilla marina
           ATCC 23134]
          Length = 459

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 112/317 (35%), Gaps = 34/317 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  + V G+ GK+++ + +  + +  GL    I   + ++ +    ++T  +P+ + +  
Sbjct: 108 KQRVVVGGSHGKTTITAMLLHVFKYHGLPCDYI-VGAQLAGYNSTVKITADAPVAIIEGD 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            YLSS           +     +R        G  T +  DHI+  +T +AY     + F
Sbjct: 167 EYLSS-------PIDRTSKFLHYR-----PHIGCITGIAWDHINIFKTFEAYTQVFAQ-F 213

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +             D     + +       +     +  K +  + V       +V + 
Sbjct: 214 ADTFVDGGKLFFNTQDPRVAAICREPRKGITQTPYQEHPHKIVDNQTVLLTEQHGEVKVK 273

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G              + N  VA  +C+ + +  A   E +        R E +  N+ 
Sbjct: 274 LFG-----------NHNMQNLAVAKAMCLQLNLSEAQFYEAIPSFTGASRRMEKIAENND 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADI 412
              ++ D+AH  + +    + ++   + R +V            +  +G+   AL  AD 
Sbjct: 323 KA-VFKDFAHAPSKVTATTQALKKQYADRNLVACLELHTFSSLNKDFLGQYHNALQKADT 381

Query: 413 AIVTDDNPRSEDPEKIR 429
           A+V        +PE I 
Sbjct: 382 AVV------FFNPEAIA 392


>gi|251793118|ref|YP_003007844.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter aphrophilus NJ8700]
 gi|247534511|gb|ACS97757.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter aphrophilus NJ8700]
          Length = 457

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 93/269 (34%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G DH D  +  +A    +       +P     + +AD+   ++ +   + + C+ 
Sbjct: 185 IINNIGFDHADIFEDLKAIQR-QFHHMIRTIPNNGRILSFADEQSVEQTLAMGYWSECQY 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     GK          H+  + ++  +G+   +  + + GE  + N L+A       G
Sbjct: 244 V-----GKDQEWYAERITHDCTEFSVFHKGEKVAEVHWNIVGEHNMRNGLMAIAAAHHAG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRI 384
           +      E L        R E V  N     +Y D+AH    +   L  +R     + RI
Sbjct: 299 VSIQKACEALGSFINAKRRLE-VKGNLHDITVYDDFAHHPTEIRATLTALRDKVGANARI 357

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFI 440
           + V          G        AL+ AD+  +         PE I    A+I   +    
Sbjct: 358 LAVLEPRSNTMKMGVHKDEIAPALEKADVVFLFQ-------PETIPWKVADIADALTQPA 410

Query: 441 EKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
              + + A+   I       D ++V   G
Sbjct: 411 AHSDDLAALVNMIATEAKPTDHILVMSNG 439


>gi|330888575|gb|EGH21236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 448

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 118/349 (33%), Gaps = 42/349 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++ KS+V + V ++   +G      G   T +                      L
Sbjct: 112 IAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPA--------------------LDL 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S  V    +E SS  L+    D +     +  N+  DH+D +    AY  AK R+F   
Sbjct: 152 LSDDVELYVMELSSFQLE--TTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRG- 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++   DA S+ ++           + G      H   +   + ++ +    E 
Sbjct: 209 ---ARQVVVNRQDALSRPLIGEGLPCW----TFGLNKPDFHGFGLREENGEKYLAFQFEN 261

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + G     NAL A  L  A+G+    +L  L +   +    +++      G 
Sbjct: 262 LMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHPCQWL--REHDGV 319

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            Y + +  +N +   L  I  + S     +V+   G  +      +   +A       ++
Sbjct: 320 HYYNDSKATN-VGAALAAIEGLGSDIDGKLVLIAGGDGKGADFSALRAPVAEHCRAAVLL 378

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   D E I   +   +   +       A+  +  +  + D +++
Sbjct: 379 ------GRDAELIAQALGDAVT-LVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|311103841|ref|YP_003976694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
 gi|310758530|gb|ADP13979.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
          Length = 456

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 102/305 (33%), Gaps = 22/305 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++LAV GT GK++ +S +  + + +G++   +     I   AQD  +   S  +   
Sbjct: 101 PGQHVLAVAGTHGKTTTSSMLAWVLEAAGMAPNFL-----IGGVAQDLHV---SARFDPS 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              ++        +          +R            NL  DH D      A    +  
Sbjct: 153 RRPFVIEADEYDTAFFDKRSKFVHYR-----PRTAILNNLEYDHADIFPDLAAI-ETQFH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P     +  A  A    V+  A       ++ G  G +   +            
Sbjct: 207 HLVRTIPGSGRIVRPAHCAALDRVI--ARGCWSETVTFGADGAW---QATAPDAEGAFSV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +          + L GE    NAL A      +G+ +A  ++ L +   V  R E  GT 
Sbjct: 262 LRGGVTAGTVRWNLSGEHNRMNALAALAAAEHVGVPAAQGIDALTRFAGVKRRMELRGT- 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLA 410
             G ++Y D+AH   ++   L+ +R       I+              +  ++  AL  A
Sbjct: 321 VDGIKVYDDFAHHPTAIATTLEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPEALADA 380

Query: 411 DIAIV 415
           D+   
Sbjct: 381 DLVFC 385


>gi|284030818|ref|YP_003380749.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
 gi|283810111|gb|ADB31950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
          Length = 479

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 144/445 (32%), Gaps = 63/445 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            G E +V S                + P+         L   A+          L VTGT
Sbjct: 77  AGVEVVVTSPGIPPHAPLLAAAAERDVPVWSEIELAWRLRDPANA------APWLCVTGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +   +G  +   G                     L    + +  +   
Sbjct: 131 NGKTTTVQMLTAMLTAAGHRAVAAGNVG------------------LPLLEAVMDPEPYD 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            ++VE SS+ L  H    +   + +  NL  DH+D+H + +AY   K R+FE        
Sbjct: 173 VIAVELSSYQL--HFTHSMSAHSAAVLNLAPDHVDWHGSLEAYAADKGRIFENCQV---A 227

Query: 244 AIIYADDAYSKEVMKRA---HNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVE 296
            +    DA +++++++A           ++G  G      +    V     +Q+ T ++E
Sbjct: 228 CVYNVADAATEKLVEQADVVEGCRAIGFTLGTPGLSMLGLVDEYLVDRAFVEQRATSALE 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                 + P P    V NAL AA L  A G+ +  V + L        R   V   +   
Sbjct: 288 LATLADITP-PAPHNVANALAAAALARAFGVPATAVRDGLRGFRPDAHRIAHVAEVAAVN 346

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   ++ +  L            VV+  GG         +   A       ++ 
Sbjct: 347 YVDDSKATNPHAAQASLLAYEH-------VVWIAGGQAKGATFDELVTAARSRLRGVVLL 399

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA---------IRTAIEMLNKQDVLVVAGK 467
                 +D   I   +    P        +EA         +  A ++    D +++A  
Sbjct: 400 -----GQDKAVIAQALARHAPDVPVIT--VEATDTGAMETVVGEAAKLAQVGDTVLLA-P 451

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           G  +  +  N   +       +R +
Sbjct: 452 GCASWDMFANYGARGDAFAAAVRRL 476


>gi|91977862|ref|YP_570521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisB5]
 gi|91684318|gb|ABE40620.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisB5]
          Length = 470

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 116/325 (35%), Gaps = 33/325 (10%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A++++    L      +S        + V+ +   F      R         +A+TGT+
Sbjct: 67  AALILTPGVPLTHPTPHWSVLKAREAGVEVIGDVELFCRE---RRRHAPDSPFVAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  + + +G  +   G   T                     LS    +    
Sbjct: 124 GKSTTTALIAHLMREAGYDTQMGGNIGT-------------------AILSLEPPRSGRV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ +D      +    G   N+  DHID H T + Y   K RL    +     A
Sbjct: 165 HVIEMSSYQIDL--TPSLAPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAG-VQDGGTA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303
           II  DD + ++   R   AG +V+ +  +              +      S E      +
Sbjct: 222 IIGVDDGFGRDAADRLERAGKQVVRISVKQPLASGITADHETIRSSAGGASREIARLGGI 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVD 361
             L G     NA  A+   +A+G+ +  + + L     +  R E VG  ++  G  ++V+
Sbjct: 282 GSLRGLHNAQNAAAASAAALALGVSADALQKGLRSFPGLAHRMEQVGRQSSGEGATLFVN 341

Query: 362 YAHTSNSLEMILKNIRTITSGRIIV 386
            +  +N+ +   K + +      I 
Sbjct: 342 DSKGTNA-DATAKALSSFGEIFWIA 365


>gi|257482348|ref|ZP_05636389.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320322384|gb|EFW78478.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330718|gb|EFW86693.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330984504|gb|EGH82607.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009821|gb|EGH89877.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 449

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 132/410 (32%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNALSRGNPAVEYVLNKGLPYVSGP----QWLADHVLQD--RWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGDTPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIEM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGQLQGCVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  +L ++ L     V  R E V    RG  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPSLGVQALSAFKSVKRRMEKV-AEVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R  I    II V     +  + G        ++  AD  +      +  D 
Sbjct: 336 AIATTLDGLRKKIGDAPIIAVIEPRSNSMKLGAHRDGLPESVSQADQVVWYAPPNLGWD- 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     A  + G        + +EA I            +V+   G
Sbjct: 395 ---------LAATVAGGSVPSTVCDSLEAIIARVHSQAQPGTHIVIMSNG 435


>gi|241765720|ref|ZP_04763667.1| UDP-N-acetylmuramate [Acidovorax delafieldii 2AN]
 gi|241364407|gb|EER59525.1| UDP-N-acetylmuramate [Acidovorax delafieldii 2AN]
          Length = 481

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 108/336 (32%), Gaps = 35/336 (10%)

Query: 103 SLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-------------- 147
              A   L G+H   +LAV GT GK++  S +  I +++GL    +              
Sbjct: 89  QWLAEHVLQGRH---VLAVAGTHGKTTTTSMLAWILEQAGLKPGFLIGGVPLNFGVSARL 145

Query: 148 --GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--K 203
             G T+   S A+ +    P     + A     S  +  +  +         R   +  +
Sbjct: 146 GTGATAPQDSTARTSAAQAPGGKPRSAAGGRSGSHPLFVIEADEYDTAFFDKRSKFVHYR 205

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  NL  DH D      A       L    +P     ++   +     V+      
Sbjct: 206 PRTAVLNNLEFDHADIFDDLAAIERQFHHLV-RTVPASGRVVVNGLEESLARVLHM--GC 262

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLC 322
              V S G       +    A    Q   +  +G+      + L G     NAL A    
Sbjct: 263 WSSVSSFGA-----AVSDFGAAGEPQAFDVLHQGRTVARVEWSLTGTHNQLNALAAIAAA 317

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITS 381
             +G+        L     V  R E  GT  RG  +Y D+AH   +L   L    R++  
Sbjct: 318 HDVGVPVEQSALALASFQNVKRRMELRGT-VRGISVYDDFAHHPTALRTTLDGLRRSLAP 376

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415
           G  I+              +  ++  AL+ AD+A  
Sbjct: 377 GARILAVFEPRSNTMKLGAMKSQLPWALEPADLAFC 412


>gi|167750036|ref|ZP_02422163.1| hypothetical protein EUBSIR_01004 [Eubacterium siraeum DSM 15702]
 gi|167657057|gb|EDS01187.1| hypothetical protein EUBSIR_01004 [Eubacterium siraeum DSM 15702]
          Length = 438

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 113/336 (33%), Gaps = 44/336 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT GKS+ +S ++   ++SG  +  IG         ++                 
Sbjct: 109 IIGITGTKGKSTTSSLIKFFIEKSGKDTMLIGNIGVPPLERREEFTKDC----------- 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   +  E S H L+  +            N+  +H+D++    AY NAK+ +F  
Sbjct: 158 -------VIVCEMSCHQLEYVKAS---PDVAVLLNIYPEHLDHYTDFAAYRNAKLNIFR- 206

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                       D     E +K+  +   RV++ G+    I  +    I    +      
Sbjct: 207 -------YQNENDTLIIGEEVKQYADTKARVITAGFSCGDIGTRN-GGIFIGDEFY---- 254

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L GE  +YN  +A       G       + L +   +  R E+V T +   
Sbjct: 255 -PADMIDTKLKGEHNLYNIAIAIYAATKAGCTVKQCFDALPQFCGLEHRLEYVCTLNGAE 313

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I    +    +    LK     T   II     G   D+    + G   +   ++ I+ 
Sbjct: 314 YINDSISTAPQTAIAALKA-YPDTDTLIIGGMDRGIPYDELSDWLSGDTLVR--NLIILP 370

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D   R      +  ++ + +   I   +  +A++ A
Sbjct: 371 DSGKR------VAEKVTNPLVKLIYADDMEQAVKYA 400


>gi|89255915|ref|YP_513277.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314397|ref|YP_763120.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501903|ref|YP_001427968.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009183|ref|ZP_02274114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica FSC200]
 gi|254367275|ref|ZP_04983302.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|290953041|ref|ZP_06557662.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|295313756|ref|ZP_06804332.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|89143746|emb|CAJ78948.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica LVS]
 gi|115129296|gb|ABI82483.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253092|gb|EBA52186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252506|gb|ABU61012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 456

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 102/284 (35%), Gaps = 20/284 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +P  +  I  A +   ++++       C    V              +   +     
Sbjct: 211 RK-MPSTAKIIYNAKNDNVQKIISMG----CWSELVKVNSDLGISITKHTLDYSKFELCD 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G   +  + L GE    NA+ A  +   + I   +V + LE    V  R E V ++  
Sbjct: 266 INGNSVEVSWGLIGEHNALNAMSAYAVAKQLNISDEMVKDALESFRGVKRRLE-VLSHQD 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 325 NVTLYDDFAHHPTSIKLTLEAVRNKAKDAYVVALIDPRSNTMRQ 368


>gi|85058425|ref|YP_454127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sodalis
           glossinidius str. 'morsitans']
 gi|122063259|sp|Q2NVV3|MURD_SODGM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|84778945|dbj|BAE73722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 438

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 134/401 (33%), Gaps = 60/401 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV S    L   +    +   + ++ +   F               ++A+TG++GKS
Sbjct: 66  ATLIVTSPGVPLSHPALAEAAAAGVAIIGDIELFAREA--------SAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V ++   +G      G     +                      L         +
Sbjct: 118 TVTCMVGEMAAAAGWQVGVGGNIGLPALT--------------------LLDSPCQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH++ +    Q Y  AK++++       +  ++
Sbjct: 158 ELSSFQLE--TTHSLKAAAATVLNISEDHMNRYPLGLQQYRAAKLKIY----HDAAVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
            A+DA +  V         R +S G +     L++     +  Q  +   G+        
Sbjct: 212 NAEDALTLPV----RGHDARCISFGAERGDYCLRR-----HAGQTWLMARGEPLLEGAEL 262

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G     NAL A  L  A+GI SA  L  L +   +  RFE V        I    A 
Sbjct: 263 RVGGRHNYTNALAALALSDALGIPSAASLAALRQFRGLTHRFELVHERRGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +  +  G + ++   G  +     P+   +  D   +     D      
Sbjct: 323 NVGSTEAALNGLEVV--GTLHLLL-GGDGKSADFTPLTPWLQGDRVQLYCFGQDG----- 374

Query: 425 PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                A++    P          +A+R     +   D++++
Sbjct: 375 -----AQLASLCPEAATLTETLEQAMRIIGSRVRAGDLVLL 410


>gi|330881133|gb|EGH15282.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 439

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 132/410 (32%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNALSRGNPAVEYVLNKGLPYVSGP----QWLADHVLQD--RWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGDTPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIEM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGQLQGCVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  +L ++ L     V  R E V    RG  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPSLGVQALSAFKSVKRRMEKV-AEVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R  I    II V     +  + G        ++  AD  +      +  D 
Sbjct: 336 AIATTLDGLRKKIGDAPIIAVIEPRSNSMKLGAHRDGLPESVSQADQVVWYAPPNLGWD- 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     A  + G        + +EA I            +V+   G
Sbjct: 395 ---------LAATVAGGSVPSTVCDSLEAIIARVHSQAQPGTHIVIMSNG 435


>gi|121998872|ref|YP_001003659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
 gi|121590277|gb|ABM62857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
          Length = 447

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 132/354 (37%), Gaps = 48/354 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +VVS    L+    T        VV      L+LFA  + G     + AVTG++GK
Sbjct: 70  GAERVVVSPGLDLRHGVWTELRAAGRSVVGE----LTLFAEAVAG----PVCAVTGSNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V S + ++ + +G      G   T                    AL  L         
Sbjct: 122 STVVSLLGEMARAAGWDVAVGGNLGT-------------------PALELLEQAPADGYL 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+     G +    +  N+  DH+D + +   Y  AK R    +L     A++
Sbjct: 163 IEVSSFQLEA--CPGFRADVAALLNVSADHMDRYDSLDDYAAAKAR----VLDGARVAVL 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
            A+D     + +RA     R  ++     +  L++        +  ++  G+    +   
Sbjct: 217 NAEDPQIAGLGQRADA--VRHFNLDGPADYHLLEQ------GGRAWLAAAGQPRQAIDEL 268

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG     NAL A  L  A+GI        L+    +P R E VG     G  +++ + 
Sbjct: 269 PVPGRAHCANALAAMALADALGIAEVAQCRALQAFSGLPHRMESVGEWR--GVRWINDSK 326

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +N    +            +V+   G  +    RP+    A     + ++ +D
Sbjct: 327 ATNVGAAVAAIGGLHRP---VVLIAGGQGKGADFRPLAQACAESARAVVLIGED 377


>gi|315652170|ref|ZP_07905167.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           saburreum DSM 3986]
 gi|315485565|gb|EFU75950.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           saburreum DSM 3986]
          Length = 448

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 108/318 (33%), Gaps = 33/318 (10%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T   +E SS  L+   +   +    +  N+  DH++ H T + Y   K     +   +  
Sbjct: 155 TVTVLETSSFQLE--TVIDFRPKISAILNITPDHLNRHHTMENYIRVK-EDISKNQDEND 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I+  +DA  +E  KR         S        +L+          +  SV+G     
Sbjct: 212 FCILNYEDAALREFAKRVKAKVVFFSSKERLDNGFYLE-------GGFIMHSVDGNSTKL 264

Query: 303 L----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           L      + G     N + A  +    G+   +++      H V  R EFV     G + 
Sbjct: 265 LDTGKLNILGRHNYENVMAATAIAFVYGVPQDIIVNTCYNFHAVEHRIEFVK-EVNGVKY 323

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y D   T+   +  ++ +  + +   I+  G G D+       +      +  + ++   
Sbjct: 324 YNDSKGTNP--DAAIQAVLAMPAATYII--GGGYDKGSEYDEWIESFGTKVKKLVLMGAT 379

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV----AGKGHETVHI 474
             +  D  K      HG        +  EA++         + +++    A  G     +
Sbjct: 380 AKKIADCAK-----KHGFTDIEIVESMEEAVKLCAGEAKAGEYVLLSPACASWG-----M 429

Query: 475 VTNGEKKMSVDCDIIREI 492
             N E++  +  D +R +
Sbjct: 430 FKNYEERGKIFKDCVRNL 447


>gi|157092738|gb|ABV22542.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 849

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 125/355 (35%), Gaps = 36/355 (10%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++G     +G T+T  ++  D  + +        A   L    V    +E + 
Sbjct: 503 LLAHIYKQTGKV---VGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADD 250
            G+ +  L       G   N+  DH+           A ++ +  E +  +  A++ ADD
Sbjct: 560 GGILRFGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADD 619

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTISVEG------- 297
              + V   A      +       +   ++K      V A++    ++I V+G       
Sbjct: 620 ---RRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSI-VKGDWTHRIE 675

Query: 298 --KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
             +           F + NAL A+       +    +   L          PGR      
Sbjct: 676 RAEQIPLTMGGRAPFMISNALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNL 735

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +  DYAH   S E +   +R  TSG+ I V G  GDR       +GK+A ++ D
Sbjct: 736 GNYHALV--DYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFD 793

Query: 412 IAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQ 459
             IV +D+     PR    E I   I    P   +    +  +AI   ++M    
Sbjct: 794 YIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPAN 848


>gi|86148538|ref|ZP_01066825.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
           MED222]
 gi|85833684|gb|EAQ51855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
           MED222]
          Length = 438

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 136/400 (34%), Gaps = 61/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +              K    ++A+TG++GKS
Sbjct: 69  ADLVVANPGIALATPEIQDVIQAGIPVVGDI-----ELFGWAVDKP---VVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      + + +GL+   +G    I   A D          L                 
Sbjct: 121 TVTDLTGVLAKAAGLN---VGVGGNIGIPALDLLELDADLYVL----------------- 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L A +F NL  DH+D +Q    Y +AK+R+F         AI+ 
Sbjct: 161 ELSSFQLE--TTFSLNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIF----NNAQCAIVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFP 305
            +D       +   +    +++ G   +   +  +  I       +   GK         
Sbjct: 215 REDK------ETYPDQTMSLVTFGLDDQEFGVATIDGIEW-----LIDNGKPVLPSQDLT 263

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   V NALV+  L   +GID +  LE L+  + +  R + V        +    A  
Sbjct: 264 LVGRHNVANALVSLALLKQVGIDYSKSLEALKAYNGLTHRCQVVADKREIKWVNDSKATN 323

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSED 424
             S    L  +     G + +    G  +      +   +A LD   +    +D      
Sbjct: 324 VASTLAALSGLE--YQGTLYL-LVGGVGKGADFSELNPVLAQLDRVQLCCFGED------ 374

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                A+ +   P      +  + I +    L   D++++
Sbjct: 375 ----AAQFMPLHPSAKTFDSMRDIIESISAQLVSGDMVML 410


>gi|291533201|emb|CBL06314.1| UDP-N-acetylmuramyl tripeptide synthase [Megamonas hypermegale
           ART12/1]
          Length = 104

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L++ L+   ++    ++I  ++ DSR ++   +FV I G + DG+ FIPQAI  GA 
Sbjct: 3   IEQLVSVLNNVEVKGDVNKEIEFITHDSRRVRKNTLFVCICGTRVDGNKFIPQAIEAGAC 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           AI+             + ++  ++ V N R+ + L     Y    +  +
Sbjct: 63  AIMTEKDVE-------VPADITVIKVPNMREAMELAVPYFYDYPGKKCV 104


>gi|27904701|ref|NP_777827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|31076803|sp|Q89AQ2|MURD_BUCBP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27904098|gb|AAO26932.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 442

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 139/403 (34%), Gaps = 70/403 (17%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+VS   +    +    +   I ++ +   F+              I+A+TG++GKSSV 
Sbjct: 72  IIVSPGITPSHPALKFATKKNIEIIGDIELFVQE--------TKVPIIAITGSNGKSSVT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V++I Q++G +++  G                        AL+ ++        +E S
Sbjct: 124 KIVKEIIQKAGFTTYIGGNIG-------------------IPALNIVNKF-AHFFILELS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  L+  R   +K    +  N+  DH++ + +  + Y  AK ++++         II  D
Sbjct: 164 SFQLE--RTFSLKAYIATILNITPDHLNRYSSDIKEYEKAKQKIYKN----SKICIINVD 217

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +     V         + +S G      HL            ++ +          L G 
Sbjct: 218 NP----VTINRQAQLTKCISFGVHSGDYHLSHTYTNTWLCYKSLKLINTK---KLKLSGR 270

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A  +   + I   + +  L+    +P R + V  N+    I    +    S 
Sbjct: 271 HNYINMLSALAIVHELKISFKISVRILKNFLGLPHRCQKVYKNNNITWINDSKSTNIAST 330

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN--------PR 421
           +  +++I   T G+I ++   GGD+      ++  I  + A +      +        P 
Sbjct: 331 KSAIQSIN--TKGKIRLIL--GGDKKSSNLNLLKPILKNNAIVIYCYGKDKKELFNLYPH 386

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +   E++  I                   +   DV+++
Sbjct: 387 KSKIFETLQEVMQHISV----------------QVQPGDVVLL 413


>gi|297544236|ref|YP_003676538.1| FolC bifunctional protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842011|gb|ADH60527.1| FolC bifunctional protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 427

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 138/408 (33%), Gaps = 59/408 (14%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152
           +N R+ LS        +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRRLLSYMG---NPQKSLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 153 -----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-- 205
                I+              Y+   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 206 --------------------AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
                                   T +  DH D    T       K  + ++    +   
Sbjct: 140 VLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQ----KGVV 195

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + +     + +V+  A       L+V  +        V          I    K  D   
Sbjct: 196 VSFYQQPEAMKVIIEACEVRNAYLTVLEKS------NVIIKEQNPDFQIFDYKKYKDLKI 249

Query: 305 PLPGEFQVYNALVAAGLCIAI-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            L GE Q+YNA +A      +      I    + E L +     GR E +    +   + 
Sbjct: 250 TLLGEHQIYNAALAIESVEKLRMYGYEITKKDIKEGLYRAKWP-GRLEVM---RKKPYVV 305

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-D 418
           +D AH    +  + ++++     R+I+V G   D+D  K      I +  ADI I T   
Sbjct: 306 IDGAHNPQGMTALKESLKLFKYDRLILVIGMLKDKDTQKML---DIIVPEADIIITTTPI 362

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + R+    ++  +I       I   N  +A++ A+++  ++D+++  G
Sbjct: 363 SERAYKASELAQKIDK--KNVIPIENIEKAVKYALDIAKEEDMVLFCG 408


>gi|213019467|ref|ZP_03335273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212994889|gb|EEB55531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 443

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 120/353 (33%), Gaps = 53/353 (15%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++ +TGT+GKS+  S +  I + +G      G                         L
Sbjct: 109 QKVIGITGTNGKSTTTSLIGHILKSTGKKVAIGGNLG-------------------MPIL 149

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +      +E SS  L+   ++ I +      N+  DHID H +   Y   K++L 
Sbjct: 150 DL--ERDAEIYVIEFSSFQLEL--MNEINVDISVLLNITPDHIDRHGSMNNYIATKLKL- 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +     A+I  D+  + +V  +       + +               + N     +S
Sbjct: 205 ---INGSKIAVIGCDNKITSDVFNKFTGNKIPISASMSPSLSSQCLGTGKLENHS---LS 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V     + +        V N + A  +C  +G+DS+ ++  ++    +  R EF+G    
Sbjct: 259 VSDVKINLVS------NVENIVAAHAVCKLLGVDSSTIVNEIKSFPGLRHRNEFLGKIHN 312

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A  + S E  + + + I      +V   G  +  G   +            I
Sbjct: 313 VLFINDSKATNAESTEKAILSYKNI----YWIV--GGKSKKGGIESLSKHFTKIRKAFLI 366

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML---NKQDVLVV 464
                   E  E + A I+     +++  N   A + A E      ++  +++
Sbjct: 367 -------GESTE-VFANIMENKIDYMKCYNLENAFKLAFEEAINSKEEVAILL 411


>gi|119713342|gb|ABL97406.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [uncultured marine bacterium EB80_02D08]
          Length = 435

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 123/354 (34%), Gaps = 41/354 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + +LA++GT GK++ +  +  I    G     +     IS+    +        ++ +A 
Sbjct: 101 KKVLAISGTHGKTTTSYMLTHIMLDQGNDIGFL--VGGISNNISGSASLGSHKTFVIEAD 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+           S                  +N+  DH D     +        L 
Sbjct: 159 EYDSAFFDKRSKFIHYS------------PSTLVISNIEFDHADIFNNLEDIKRQFHHLL 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + ++P +   I + DD  +KE++     +   +++ G   K  +L K          T+S
Sbjct: 207 K-IIPLDGNIIYFGDDKNTKELIDMGVWSHEMIVN-GNIIKADYLNK----------TLS 254

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + K +     PL GE    N + A       GI     +  L+    V  R E  GT  
Sbjct: 255 YKDKRYLLGELPLIGEHNFKNYIAAILAAKTDGISIEDSINSLKSFSGVKRRMESKGT-F 313

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG--CGGDRDQGKRPIMGKIALDLAD 411
            G + Y D+AH   ++E     +R+    + I+            G   +    ++   D
Sbjct: 314 DGIKFYDDFAHHPTAIEFSSDALRSKYPTKKILGLIELGSNTMASGSHGLSILNSVKSLD 373

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I  D N           +++    G     N  + I +A  M+   D++V+ 
Sbjct: 374 DVIWLDYN-----------DVLKEAKGIYCYSNSKDFISSAKSMMLDYDIVVLM 416


>gi|268319706|ref|YP_003293362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii FI9785]
 gi|262398081|emb|CAX67095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii FI9785]
          Length = 460

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 109/350 (31%), Gaps = 34/350 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              + VTG++GK++     Q+I       +         I     +      S   L   
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRIMDHHLSKNGGHAYAVGNIGVPISEVVEKATSKDLLVVE 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +S     GVT +                +  I   + N+   H+DYH+T   Y  AK+R+
Sbjct: 173 MSSFQLLGVTDIK-------------PKVAAIVDIYNNV---HLDYHKTFDNYVEAKLRI 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   ++   I   D     E       A  +  S   +     +             +
Sbjct: 217 -TQSQDQDDYFIANFDQKNILEKELDKTKAKVQTFSETDKTADYFIGDEYLESKDDHHIM 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          +PG     N LVA  +   +  D + +   L        R ++V T  
Sbjct: 276 KISD------IKIPGIHNQQNCLVAIAISKLMSADDSDIQYALSTFTGATHRLQYVMT-Y 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              +IY D   T+  +E     I +       V+   G DR      ++      +  I 
Sbjct: 329 NDRKIYNDSKSTN--IEAATVAIPSFKEPE--VLIAGGLDRGFMFDSLVPLFKKHVKSIV 384

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +      D  +       GI   +      EA+  A E+    D+++
Sbjct: 385 LYGETKYLLADAAR-----KAGIKNIVIVNTLQEAVPRAYELSEAGDIIL 429


>gi|187477731|ref|YP_785755.1| cyanophycin synthetase [Bordetella avium 197N]
 gi|115422317|emb|CAJ48841.1| cyanophycin synthetase [Bordetella avium 197N]
          Length = 870

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 146/430 (33%), Gaps = 42/430 (9%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAV 120
           A  +GA   V +    L        +  P+   +VD       LF     G+ P  I+ V
Sbjct: 435 AEQRGAIVEVNAGPGLLMHIKPAEGTPRPVGRAIVD------HLFPEGEDGRIP--IVGV 486

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK+ VA  + ++   SG  +   G   +   +     +        A     L ++
Sbjct: 487 TGTNGKTVVARLISRLLHLSGKQT---GLACSEGLYFNKRLVQKGDCANWAAGRRVLMNR 543

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQTQQ-AYFNAKMRLFEELL 238
            V    +E  S  +    L   +   G  TN+   DH+      +        R   +++
Sbjct: 544 NVEAAVIENDSGVILGQGLAYDRCQVGVVTNIDDGDHLGDFDINETERLFTVFRTQVDVV 603

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-----TI 293
                A++ A DA    V++ A      VL  G   +   L +      +         +
Sbjct: 604 LPTGAAVLNARDA---RVVEMAELCDGEVLFFGIDPQLPALAQHRTQGKRTVFLRDEHIV 660

Query: 294 SVEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              G++                  EFQ  N L A     A+ I   L+   +E   +   
Sbjct: 661 LARGEEEEKLAPIAAIPLTHGGRVEFQTENVLAAVAAAWALDIPVDLIRAGIETFDIDQA 720

Query: 345 R--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
              ++F         + VD  H ++ L  +   ++   + R I V+  G DR        
Sbjct: 721 DAPWQFTLFQRDSVSVVVDDVHNASGLRALSAAVQRFPAKRRIAVYSGGMDRRDADLIEQ 780

Query: 403 GKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIE 454
           G++   L D+ ++ DD       P  +    +R  +    P    +E+ +   AI   + 
Sbjct: 781 GRLLGQLFDLVVLYDDATVKSKRPAGQARALLRQGLTQSGPAVQIVEEADHARAIEHVLA 840

Query: 455 MLNKQDVLVV 464
                D +++
Sbjct: 841 AAASDDFILL 850


>gi|53802547|ref|YP_112695.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylococcus capsulatus str. Bath]
 gi|53756308|gb|AAU90599.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylococcus capsulatus str. Bath]
          Length = 454

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 113/371 (30%), Gaps = 39/371 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ----IGPTSTISSFAQDNRLTTPSPIYL 170
             +LAV GT GK++ +S +  I +  G         +     IS+   + R         
Sbjct: 103 RWVLAVAGTHGKTTTSSMLAWILEHDGHKPGFLIGGVPLNFGISARIGEGRFVVVEADEY 162

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A     S+ V +                  +       NL  DH D      A     
Sbjct: 163 DTAFFDKRSKFVHY------------------RPRTTILNNLEYDHADIFPDLAAIQRQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P     ++   D    EV++          ++G            A     +
Sbjct: 205 HHLVRS-VPGNGLLVVPERDENLAEVLRMGCWTPVEKTALGPDTAADWQAHPLAED-GSR 262

Query: 291 VTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   GK      + L G   + NAL A       GI+ A  +  L +   V  R E V
Sbjct: 263 FDVVFRGKRQGTIHWQLSGRHNMLNALSAIAAAHHAGIEPAAAISALSRFQSVKRRLE-V 321

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIAL 407
               RG  +Y D+AH   ++   L+ +R    G   I VV         G        +L
Sbjct: 322 RAEVRGITLYDDFAHHPTAIATTLEGLRARVDGARVIAVVEPRSNTMRMGVHADTLAASL 381

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG 466
             AD+AI+        D  K+           I   + I AI     +     D +V   
Sbjct: 382 APADLAILYQAPDLGWDLAKV-----SSASDRIVTCDSIGAIVERLRQECRAGDHVVFMS 436

Query: 467 KG-----HETV 472
            G     HE  
Sbjct: 437 NGSFGGVHEKT 447


>gi|190570951|ref|YP_001975309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357223|emb|CAQ54641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 451

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 120/353 (33%), Gaps = 53/353 (15%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++ +TGT+GKS+  S +  I + +G      G                         L
Sbjct: 117 QKVIGITGTNGKSTTTSLIGHILKSTGKKVAIGGNLG-------------------MPIL 157

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +      +E SS  L+   ++ I +      N+  DHID H +   Y   K++L 
Sbjct: 158 DL--ERDAEIYVIEFSSFQLEL--MNEINVDISVLLNITPDHIDRHGSMNNYIATKLKL- 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +     A+I  D+  + +V  +       + +               + N     +S
Sbjct: 213 ---INGSKIAVIGCDNKITSDVFNKFTGNKIPISASMSPSLSSQCLGTGKLENHS---LS 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V     + +        V N + A  +C  +G+DS+ ++  ++    +  R EF+G    
Sbjct: 267 VSDVKINLVS------NVENIVAAHAVCKLLGVDSSTIVNEIKSFPGLRHRNEFLGKIHN 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A  + S E  + + + I      +V   G  +  G   +            I
Sbjct: 321 VLFINDSKATNAESTEKAILSYKNI----YWIV--GGKSKKGGIESLSKHFTKIRKAFLI 374

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML---NKQDVLVV 464
                   E  E + A I+     +++  N   A + A E      ++  +++
Sbjct: 375 -------GESTE-VFANIMENKIDYMKCYNLENAFKLAFEEAINSKEEVAILL 419


>gi|194468379|ref|ZP_03074365.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lactobacillus
           reuteri 100-23]
 gi|194453232|gb|EDX42130.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lactobacillus
           reuteri 100-23]
          Length = 456

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 145/419 (34%), Gaps = 52/419 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----------SLF 105
           +  +    A G   I   +  SL +    +    P +  DN                +  
Sbjct: 46  NDIVDDLEADGIRVITGDNPISLANEGFDVVVKNPGIPYDNPLVAAFVKQGTPIITEAEL 105

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
             +++  H   +++VTG++GK++  +  Q     +  +  Q+     I            
Sbjct: 106 GWQIFDGH---LVSVTGSNGKTTTTTLTQ--LMIAENAKHQVKYAGNIGISFSKIAEDLG 160

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               L   LS     G                    I       TN+  +H+DYH+T++ 
Sbjct: 161 PDDTLVTELSSFQLLGA-----------------PTIHPHIAIITNIFSNHLDYHKTREN 203

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y NAK+ +      K+   +I  D    +++ +R+         +       +++     
Sbjct: 204 YINAKLNI-TRNQTKDDFLVINWDRDEWQKIAQRSQATIVPFSRLNKSHDGSYVEDGMIY 262

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              Q+V  + +         L G   V NAL A       G+ +  + + L     V  R
Sbjct: 263 WRGQEVMPTKD-------IRLIGPQNVENALAAIAAAKLSGVTNDAIKKVLTTFSGVRHR 315

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            ++V       R++ + + +++ +E     ++     R +++   G DR      ++   
Sbjct: 316 LQYVMEYQE--RLFYNDSKSTD-IEATEVALQGF--NRPVILLAGGLDRGYTFERLVPYF 370

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  + +  +   + +D          G+P  +E  N I A+  A ++    DV+++
Sbjct: 371 KKHVKAMIVFGECKDKMKDVGN-----QAGVP-VVESENAITAVPEAWKLSEPGDVILL 423


>gi|183599903|ref|ZP_02961396.1| hypothetical protein PROSTU_03424 [Providencia stuartii ATCC 25827]
 gi|188022178|gb|EDU60218.1| hypothetical protein PROSTU_03424 [Providencia stuartii ATCC 25827]
          Length = 441

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 149/399 (37%), Gaps = 58/399 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        +N  I +V +   F          +    I+A+TG++GKS
Sbjct: 71  ADLIVASPGIALATPELQQAANKGIEIVGDIELF--------CREADAPIIAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G+S   +G    I                   ALS L +QG     +
Sbjct: 123 TVTSLVGEMAKAAGIS---VGVGGNIG----------------IPALSLL-NQGHQLYVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++ +A +  N+  DH+D +      Y +AK+R++       +  I+
Sbjct: 163 ELSSFQLE--TTSSLQALAATVLNVTEDHMDRYPLGLAQYRDAKLRIY----HNAANCIV 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            A D  +   + R        +S G   G +    +   +  K Q  I V          
Sbjct: 217 NAQDPLT---LPRDRRHEA-CISFGVDSGDYYFDTQQRLLVAKGQAIIDVAD------MH 266

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+    NAL A  L    GI+    L+ L+    +  RF+ V  N+    I    A  
Sbjct: 267 LTGQHNYTNALAALALADIAGIERKACLDVLKNYAGLMHRFQLVLLNNGVRWINDSKATN 326

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S E  L  ++    G + ++   G  +     P+   +A D   +     D       
Sbjct: 327 VGSTEAALNGLK--VDGTLHLLL-GGDGKAADFSPLKPYLAQDNVRVYCFGRD------- 376

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            K  A++       +      +++R     L   D++++
Sbjct: 377 GKALAQLEP--EKSVLTETMEQSMRYLAPHLKSGDMVLL 413


>gi|302518532|ref|ZP_07270874.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB78]
 gi|302427427|gb|EFK99242.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB78]
          Length = 144

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 9/130 (6%)

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+++R +T GR+ VV GCGG RD  KR  MG  A  LAD A++T DNPRSEDP  I A 
Sbjct: 1   MLRSLRRVTEGRVHVVLGCGGARDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLAILAA 60

Query: 432 IIHGIPG--FIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           ++ G       E+G+      R  AI   +      D +++AGKGHE    V NG  +  
Sbjct: 61  MLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHEQGQDV-NGVVRPF 119

Query: 484 VDCDIIREIL 493
            D ++++E +
Sbjct: 120 DDREVLKEAI 129


>gi|220933947|ref|YP_002512846.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995257|gb|ACL71859.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 442

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 46/370 (12%)

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
            + D   F P A+  G + ++VS   S+ + +          ++ +   F     +    
Sbjct: 52  ARLDAGPFDP-ALFTGVKRLIVSPGVSVAEPAIQAARAAGAEILGDIELFAREARA---- 106

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++A+TG++GKS+V + V ++ + +GL+    G                       
Sbjct: 107 ----PVVAITGSNGKSTVTALVGEMARAAGLNVAVGGNFG-------------------I 143

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            AL  L+   V    +E SS  L+    + +  +A +  N+  DH+D +++ + Y  AK 
Sbjct: 144 PALDLLNDADVELYVLELSSFQLE--TTESLAPVAATVLNISADHLDRYESLEDYAAAKE 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQ 290
           R+F         A+I  DD     V   A  A      +   G+    L +  A     Q
Sbjct: 202 RIFRR----TETAVINRDDP---RVWSMAGGARRVSFGLDVPGEGDWGLVERDAEPWLAQ 254

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I    +       + G     NAL A  L  A G+    ++E L +   +P R ++V 
Sbjct: 255 GEIPWFAES---RLRIAGRHNTANALAALALGQAAGLPGEAMVEALTQFSGLPHRCQWV- 310

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T   G   Y D   T+  L   L  +        +V+   G  + Q   P+   +     
Sbjct: 311 TRLHGVSWYNDSKGTN--LGATLAALEGFPG--QVVLIAGGQGKGQDFAPLGDAVVGKAR 366

Query: 411 DIAIVTDDNP 420
            + ++ +D P
Sbjct: 367 AVVLLGEDAP 376


>gi|313888161|ref|ZP_07821835.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845851|gb|EFR33238.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 432

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 140/389 (35%), Gaps = 53/389 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQ--------------------RSGLSSFQIGPTSTISS 155
            ++ V GT+GK S  +F++ + +                    + G +       + I  
Sbjct: 40  KVIHVAGTNGKGSTVNFIKDVLKEDYKVGSFVSPHLITYCDRIKIGDAEISQADFAEIGE 99

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN---- 211
           F  +                +L+   + +   E     + +  + G       FTN    
Sbjct: 100 FIIEREKDIVEEYGDLNLFEFLTIMAIIYFEREGVDLAILEVGMGGRADSTNIFTNREKL 159

Query: 212 ------LGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 +  DH++Y   T +   +AK  + +E            D      + K A    
Sbjct: 160 ISLITSISMDHMEYLGDTIEEIADAKAGIIQE---GGLVVTTNMDPKILGVIEKEAKEKS 216

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +    +  K +  + + +        + ++  + +F     G++QV NA  A      
Sbjct: 217 AEL----FYTKDLASEILNSDLRGIDFKVKLDDVEEEFHLTQIGDYQVENAFGAIYALYL 272

Query: 325 IG------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           +       I    +   +++     GR E V   SR   I +D AH  + ++ +++++  
Sbjct: 273 LNKRGILKISLDDIKARIKR-STWKGRMEIV---SRDPLIILDGAHNFDGIKRLVESLDN 328

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIP 437
               ++ ++     D++   + ++ +IA    ++  V  D  R   P+++ +E   +G+ 
Sbjct: 329 FKFKKLHLIMSILADKE--HKKMLEEIASYTDEVVFVNLDYKRGTSPDELSSEASEYGLK 386

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           G +   +  EA+    +   + D++++ G
Sbjct: 387 GQVMTID--EALAYYKKSYQEGDLILITG 413


>gi|257421242|ref|ZP_05598232.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis X98]
 gi|257163066|gb|EEU93026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis X98]
          Length = 456

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|317496100|ref|ZP_07954460.1| UDP-N-acetylmuramate-alanine ligase [Gemella moribillum M424]
 gi|316913675|gb|EFV35161.1| UDP-N-acetylmuramate-alanine ligase [Gemella moribillum M424]
          Length = 435

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 107/326 (32%), Gaps = 41/326 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK++  +    I + + ++S+ IG  +       D                ++
Sbjct: 104 IAVTGAHGKTTTTTMTSNIFKHNRVTSYLIGDGTGHGEKNSD----------------FM 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++   +       H L  H            TN+  DH DY   +   F+A      ++
Sbjct: 148 IAEACEYYR-----HFLAYH------PDYAIVTNIDFDHPDYFNDEYDMFDAFQSFVNQV 196

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE 296
                  +I  DD     +  +   A  + ++ G+  G    +K V       +  I   
Sbjct: 197 KN---TVVICGDD----RLASKLKPAHAKTITYGFNDGNDYQIKNVQTSTEYSKFDIYKN 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   + G   + NA  A  L    GI    + E L+       RF     +S  
Sbjct: 250 NTLLGTFTMAIFGLHDISNATSAIALADINGISVEKIQESLDLYRPAERRFSEYKFSSN- 308

Query: 356 GRIYVDYAHTSNSLEMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH  + ++  +    R     +I+ +F         K       +L  AD   
Sbjct: 309 -VVVDDYAHHPSEIKATIDSARRKYAGKQIVAIFQPHTYTRTAKFLNEFAESLLTADKVF 367

Query: 415 VTDDNPRSEDPEKI--RAEIIHGIPG 438
           +        + EKI    ++    PG
Sbjct: 368 LCPIFASVREKEKIVGIEDLQKVTPG 393


>gi|315029682|gb|EFT41614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4000]
          Length = 456

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|297199066|ref|ZP_06916463.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           sviceus ATCC 29083]
 gi|197715981|gb|EDY60015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           sviceus ATCC 29083]
          Length = 472

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 145/401 (36%), Gaps = 47/401 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LA+TGT+GK++    +  I + +GL +  +G               
Sbjct: 105 ELAWRLRGPDAAPWLAITGTNGKTTTTQMLASILKAAGLRTAAVGNIG------------ 152

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 ++   + L  +    ++VE SS+ L  H    ++  + +  NL  DH+D+H + 
Sbjct: 153 ------VSLLDAVLGDEQYDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSM 204

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY   K R++E    + +     AD A    V +     GCR +             V 
Sbjct: 205 EAYAADKGRIYEG--NRVACVYNVADKATEDLVREADVEEGCRAIGFTLGTPGPSQLGVV 262

Query: 284 AIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                 +  +    K+   L        P    + NAL AA L  A G+ +  V + L  
Sbjct: 263 EGILVDRAFVEDRHKNAQELAEVSDVNPPAPHNIANALAAAALARAFGVPARAVRDGLRD 322

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
                 R   V      G +    A  +++ E  L    +      IV    G  +    
Sbjct: 323 FTPDAHRISHVADVDGVGYVDDSKATNTHAAEASLAAYES------IVWIAGGLAKGATF 376

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIE------AIRT 451
             ++ K A  L  + ++       +D   IR  +    P   +   +R +      A++ 
Sbjct: 377 DELVAKSAKRLRGVVLI------GQDRALIREALARHAPEVPVVDLDRTDTGAMLAAVQE 430

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           A  +    D +++A     ++ +  N  K+     + +RE+
Sbjct: 431 ASRLAVAGDTVLLA-PACASMDMFANYNKRGDAFAEAVREL 470


>gi|154488894|ref|ZP_02029743.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
 gi|154083031|gb|EDN82076.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
          Length = 479

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 123/371 (33%), Gaps = 45/371 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G      S                  
Sbjct: 102 PAQWIGITGTNGKTSTTEMTSEMLTACGLAAPAVGNIGKAVS------------------ 143

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H    ++L   + TN+  DH+D+H   + Y   K ++
Sbjct: 144 -HAAVDPANDVLCVELSSFQL--HFTYSLELDCAAITNIADDHLDWHGGIENYAADKAKV 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGY-----------QGKFIHLKK 281
           F  +   +   +  ADD    ++   A  A  CR +                G  + +  
Sbjct: 201 FHNV---KKALVYNADDERVTKLAFAAQTAPECRRIGFTLAEPKDGQIGVKDGWIVDMSG 257

Query: 282 VCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +      +   ++   +               + +AL A  L + +G D    L  L++ 
Sbjct: 258 IGGGEAGKPFQVAKVTDFTHLTEPDGTVYPHLLADALTALALVLGLGADKDKALAALKQF 317

Query: 340 HVVPGRFEFVGTN--SRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                R + V     S GG I +VD +  +N+               + +    G  +  
Sbjct: 318 TPGGHRIQTVAVAKTSDGGTIRFVDDSKATNAHAAKASLNSFADKSVVWI--AGGLAKGS 375

Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIE 454
               ++   A  +    I+  D  P  +  +    +I   +   ++       AI  A  
Sbjct: 376 RFEQLVADQAHTIKAAIIIGKDQQPMLDAFKASAPDIPMSVIDPMDNDTVMARAIDAAGT 435

Query: 455 MLNKQDVLVVA 465
                DV+++A
Sbjct: 436 YAQSGDVVLMA 446


>gi|94987544|ref|YP_595477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
           intracellularis PHE/MN1-00]
 gi|122063249|sp|Q1MPC1|MURD_LAWIP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94731793|emb|CAJ55156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 440

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 123/369 (33%), Gaps = 62/369 (16%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           NT + LS      Y    E ++A+TGT+GK+++AS    +    G+S F  G   T  S 
Sbjct: 103 NTIQVLSETELAWYQLSNEKVIAITGTNGKTTIASLCAAMLVEQGISVFVGGNIGTPLSE 162

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                               L  + V+ V +E SS  L        +      +N+  +H
Sbjct: 163 YV------------------LCKKKVSVVVLELSSFQL--QTCSLFRPDIAICSNISINH 202

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +DYH+    Y +AK+ +      K       A      E +  ++N   RV+     G F
Sbjct: 203 LDYHRNMDEYISAKLNI-----CKNQCESDLAILKPGMEALVDSYNLKARVVFYRDLGNF 257

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                                        L G   + NA  A   C  +G+   +  + +
Sbjct: 258 S-------------------------TSRLLGVHNLENAEAAWLACKELGVTEEIAKKVV 292

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                +  R E V   +    +      T  +L   L++ +       I++   G  +  
Sbjct: 293 TTFEPLEHRLEQVRLLNGVLYVNDSKGTTVEALRAALESFKQ-----PILLLAGGRFKGG 347

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               +   I   +  + +  +     ED      +II             +A++    + 
Sbjct: 348 DLTSLRPIIKKQVRIVGLFGNSREYFEDAW---GDIIP----ITWDNTLEQAVKRLSNLA 400

Query: 457 NKQDVLVVA 465
           +  +V+++A
Sbjct: 401 HNGEVILLA 409


>gi|303258238|ref|ZP_07344245.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderiales
           bacterium 1_1_47]
 gi|302858991|gb|EFL82075.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderiales
           bacterium 1_1_47]
          Length = 477

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 94/287 (32%), Gaps = 22/287 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L+    + +   + +  N+  DHID+H + + Y  AK ++F      ++
Sbjct: 173 DFWVLELSSFQLE--TTESLHCDSAALLNITEDHIDWHGSMEKYAAAKRKIFSA----DT 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDF 300
             ++  +D  S    +   +            K     +  V A+        S   +  
Sbjct: 227 VRVLNREDPGSMLSAEGVPSDLVHTFGSDAPKKIGDFGISDVGALVWLSGCIASASPELL 286

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +  L         NAL A  L +A+GI    +L  L +    P R + +   S     
Sbjct: 287 IPMNALRIRGLHNAMNALAATALTLAVGIPLDSILRTLREYKGEPHRVQLILRASD---- 342

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTD 417
            +DY   S    +          G   VV   GGD + Q   P+   I         +  
Sbjct: 343 -IDYVDDSKGTNVGAVAAALAGFGPKKVVLILGGDGKGQDFAPLKAPIETHAKGAVFIGR 401

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D P  E        +              EA+R A  M    D +++
Sbjct: 402 DAPLIEKEVDYPGLLKAHAKTM------AEAVREARAMAKPGDTILL 442


>gi|213969319|ref|ZP_03397457.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato T1]
 gi|213925997|gb|EEB59554.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato T1]
          Length = 479

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 125/404 (30%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + S     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 95  VVVGNALSRGNPSVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 148

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I      +     +P ++ +A  Y S+           
Sbjct: 149 SMLAWVLEHAGMSPGFL--IGGIPQNFAVSARLGGTPFFVVEADEYDSAFFDKRSKFVHY 206

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I    +
Sbjct: 207 ------------RPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPTTE 253

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
                V+K        V + G  G++   +      +  +  +  EG+      + + G 
Sbjct: 254 PALSRVIKM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGELQGAVEWGMTGL 308

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+   L ++ L     V  R E V  + RG  IY D+AH   ++
Sbjct: 309 HNVANALATLAAARHVGVVPLLGVQALSAFKSVKRRMEKV-ADVRGITIYDDFAHHPTAI 367

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDPE- 426
              L  +R       I+            G        ++  AD  +          P  
Sbjct: 368 ATTLDGLRKKVGDAPIIAVIEPRSNSMKLGAHRDGLPESVQQADQVV------WYAPPNL 421

Query: 427 --KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              + A +  G    +   +    I            +V+   G
Sbjct: 422 GWDLAATVAAGTVPALVCDSLEAIIAQVKSQAQPGTHIVIMSNG 465


>gi|33519614|ref|NP_878446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Blochmannia floridanus]
 gi|62900574|sp|Q7VQI9|MURD_BLOFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33517277|emb|CAD83661.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Blochmannia floridanus]
          Length = 444

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 130/407 (31%), Gaps = 67/407 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS    L            I VV +   F+              I+A+TG++GKS
Sbjct: 67  ANLIVVSPGVRLDHPIIIEAMKLGIEVVGDIELFVREI--------SAPIIAITGSNGKS 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V ++ +++G S    G                         LS L  Q      +
Sbjct: 119 TVTQLVSKMAKQAGWSVGVAGNIGV-------------------PVLSLLKKQ-YELYVL 158

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  LD      ++  A +  N+  DH+D + +  + Y  +K R++          ++
Sbjct: 159 EISSFQLDV--TYSLRATAATILNISVDHMDRYPKGLEEYICSKKRIY----HNSYFCVV 212

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
              D  +K ++    N G   +S     K          + K    I   G+        
Sbjct: 213 NDSDPLTKPLL----NDGIYHVSFSMNSKS---ADYRLEYYKGNNWIVANGEYVLSCAEL 265

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +       N L A  L   + I   + L+ L     +  RF+ V  N     I    A 
Sbjct: 266 KINNCMNYMNMLSALALSDIVKIPRIVSLQVLRFFSGLSHRFQLVYKNRNVCWINDSKAT 325

Query: 365 TSNSL-EMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLA--DIAIVTD 417
              +  E I   I T+  G + ++ G         +         I L     D   +T 
Sbjct: 326 NVGATKEAINNTIITLRDGNLHLLLGGDGKLANFFELSCLIKHYAIHLYCFGKDGVCLTQ 385

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                            G        N I+A+      + ++D++++
Sbjct: 386 ----------------SGFNDVFLSNNIIDAMYIISRRVQRKDIVLL 416


>gi|229546840|ref|ZP_04435565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX1322]
 gi|229548934|ref|ZP_04437659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis ATCC 29200]
 gi|255971447|ref|ZP_05422033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T1]
 gi|256617917|ref|ZP_05474763.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ATCC 4200]
 gi|256761751|ref|ZP_05502331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T3]
 gi|256852646|ref|ZP_05558017.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T8]
 gi|256962581|ref|ZP_05566752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis HIP11704]
 gi|257089402|ref|ZP_05583763.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis CH188]
 gi|307272007|ref|ZP_07553273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0855]
 gi|307290045|ref|ZP_07569969.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0411]
 gi|312904555|ref|ZP_07763713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0635]
 gi|229305955|gb|EEN71951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis ATCC 29200]
 gi|229308005|gb|EEN73992.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX1322]
 gi|255962465|gb|EET94941.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T1]
 gi|256597444|gb|EEU16620.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ATCC 4200]
 gi|256683002|gb|EEU22697.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T3]
 gi|256711991|gb|EEU27028.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T8]
 gi|256953077|gb|EEU69709.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis HIP11704]
 gi|256998214|gb|EEU84734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis CH188]
 gi|306498887|gb|EFM68381.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0411]
 gi|306511302|gb|EFM80306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0855]
 gi|310632068|gb|EFQ15351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0635]
 gi|315156842|gb|EFU00859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0043]
 gi|315157628|gb|EFU01645.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0312]
 gi|315577391|gb|EFU89582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0630]
          Length = 456

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|256825476|ref|YP_003149436.1| UDP-N-acetylmuramate--alanine ligase [Kytococcus sedentarius DSM
           20547]
 gi|256688869|gb|ACV06671.1| UDP-N-acetylmuramate--alanine ligase [Kytococcus sedentarius DSM
           20547]
          Length = 518

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 65/440 (14%), Positives = 124/440 (28%), Gaps = 92/440 (20%)

Query: 87  RSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           + + P L     R    L    +          + V G +GK+S ++ V    + +G   
Sbjct: 104 KEDVPELRAARERGLPVLHQAQALALATQGRRRIVVAGANGKTSTSAMVAWALRAAGRDC 163

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                   +                     + + +     +  + S      +R      
Sbjct: 164 GYAIGAELVGRGRN----------------AEVGTAPEFVIEGDESDGSFVTYR-----P 202

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA- 263
                TN+  DH+D + + +    A    F   +P+    I  +DD  ++    R  +  
Sbjct: 203 EVAVLTNVRPDHLDLYGSFETVQRAYDE-FLATIPRGGVLIACSDDPGARAAADRQRDRL 261

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLP----------- 307
                  G +G+      +    ++  V  SV      G+  +    +P           
Sbjct: 262 RVITYGFGVEGQATPDLHLGTPDHRGMVWESVLQDNISGRTLNLRVKVPGAHNLLNAAAA 321

Query: 308 --------------------------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                                      E  V  AL AA L              L     
Sbjct: 322 HAVVVHASATGAHGAGGDAAGADATVVEGPVDPALEAASLA------------GLADFAG 369

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVV-FGCGGDRDQGK 398
              RF+  G    G  +  DYAH  + +  +++    +   +G  +VV F          
Sbjct: 370 ASRRFQVRGEAG-GVVVVDDYAHNGDKVAAVVRTGAALARETGHRVVVAFQPHLFSRTRD 428

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                   LD AD  ++       E+P      + I   +              +A+   
Sbjct: 429 FAAEFAAGLDAADEVLLLPVFGAREEPLPGVSSQLIADRLTTSHRAVGSLEELPDAV--- 485

Query: 453 IEMLNKQDVLVVAGKGHETV 472
           +E     D++++ G G+ T 
Sbjct: 486 VESARPGDLVLLVGAGNVTT 505


>gi|116329177|ref|YP_798897.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121921|gb|ABJ79964.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 527

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 134/415 (32%), Gaps = 67/415 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-----------------GPTSTISSFA 157
           +  ++V G+ GK++ ++ +  + ++ G+S   +                 G      S  
Sbjct: 109 KKQISVAGSHGKTTTSAMIAFLLEKCGMSPSIMVGGEVAFLDGKGGSWGKGEWGIFESDE 168

Query: 158 QDNRLTTP----------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIA 206
            D                   +L   L+  +        +E +S  L  +  D GI+   
Sbjct: 169 SDGTFNNHNAEIRVLTNVDEDHLDHYLTRENLLSAFARYMERTSWKLILNLDDIGIRDSL 228

Query: 207 GSFTNLGRDH---IDYHQTQQAYFNAK----------MRLFEELLPKESPAIIYADDAYS 253
                  +DH   + + +   +   AK           R  +             +   S
Sbjct: 229 ALI----QDHSKILGFCKVFVSGEIAKNPSHNSNVEGTRTTDSSSAGNRVISSNLEKKTS 284

Query: 254 ----KEVMKRAHNAGCRVLSVGYQGKFIHL--------KKVCAIHNKQQVTISVEGKDFD 301
               K + + +     ++ + G Q    +         K +        ++   + K++ 
Sbjct: 285 QIGEKSISQYSKGKVSKIETFGAQDDTTNDVLRDIDSSKIIYYTIESGNLSFRFQEKEYS 344

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F    PGE  + NAL A   C   G     ++  + +   V  R E++G+   G  +Y D
Sbjct: 345 FFLKYPGEHYLKNALAAILACSEAGAPVTELVSQISEYSGVSRRLEYLGSK-NGIEVYDD 403

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    ++ +++++  +   GR I++F                 +LD  +   +    P
Sbjct: 404 YGHHPTEIKAVIQSMEGLKKNGRAIILFQPHRYTRTQNLYKEFAESLDTGESVYLLPIYP 463

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             EDP      E I   +   +   I      + I      L   D L+  G G+
Sbjct: 464 AGEDPIEGVGTELILNSMK--VSAKILPKEISDGIFILKNSLKPGDKLITLGAGN 516


>gi|312114846|ref|YP_004012442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219975|gb|ADP71343.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 470

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 40/311 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++  +     + ++ +T  F      R+    P  ++A+TGT+GKS+  +    +
Sbjct: 79  HPEPHWTVKLAEANGVEIIGDTEIFFRE-RRRVGANCP--VIAITGTNGKSTTTALSNHL 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G +S   G                         L         H  +E SS  LD 
Sbjct: 136 LNAAGRASVCGGNIG-------------------RAVLDLPPFVDGQHYVLELSSFQLDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   N+  DHID H + + Y   K +LF  +      A+I ADDA    +
Sbjct: 177 --TPSLDPDAGILLNITPDHIDRHGSLEGYAAVKEKLFANMT-GGGTAVIGADDALCDAI 233

Query: 257 MKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
             RA   G R L +        G  G+   L ++     + + ++S  G           
Sbjct: 234 AARAEARGVRTLRISSTKPVATGIYGEGSGLFELADGALQNRASLSGIGSLRGAHNAQNA 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                    A     ++G+  A ++E L+    +  R + +        +    A  +++
Sbjct: 294 A-------AALAATRSLGLPWATLVEGLQSFPGLAHRMQEIRRIGHVLFVNDSKATNADA 346

Query: 369 LEMILKNIRTI 379
            E  L +   I
Sbjct: 347 AERALLSFTNI 357


>gi|167768724|ref|ZP_02440777.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM
           17241]
 gi|167669122|gb|EDS13252.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM
           17241]
          Length = 489

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 100/312 (32%), Gaps = 42/312 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TG+ GK++  + + +I +  G  +   G                     L   
Sbjct: 142 PCRTIGITGSDGKTTTTTLIAEILKEGGRRAHIGGNIG----------------RPLMPI 185

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  +          E SS  L   R           TN+  +H+D H   Q Y +AK  +
Sbjct: 186 LRDIRDN--DFAVAELSSFQLISMRES---PDIAVVTNISPNHLDVHGNMQEYIDAKRNI 240

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +  D+  +      A +   R+     +     ++    +     +  
Sbjct: 241 VLHQNAFSRTV-LGVDNELA---ASFAADVRGRLFEFSVR---RPVRTGAFLGGDGFLYA 293

Query: 294 SVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           SV G+           LPG   + N L A        +D   +     +   V  R EFV
Sbjct: 294 SVNGERSKIIHKNELRLPGMHNIQNYLAAVCAVWGA-VDVEAIRNVAMEFGGVEHRIEFV 352

Query: 350 GTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                G R Y D  A T       L +      G+ ++V   G D+     P++ K+   
Sbjct: 353 -REKDGVRWYNDSIATTPTRTIAGLDSF-----GQKLIVIAGGYDKKVPFDPMVPKVVEK 406

Query: 409 LADIAIV--TDD 418
           +  + ++  T D
Sbjct: 407 VKTLVLIGATAD 418


>gi|116330215|ref|YP_799933.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116123904|gb|ABJ75175.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 527

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 134/415 (32%), Gaps = 67/415 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-----------------GPTSTISSFA 157
           +  ++V G+ GK++ ++ +  + ++ G+S   +                 G      S  
Sbjct: 109 KKQISVAGSHGKTTTSAMIAFLLEKCGMSPSIMVGGEVAFLDGKGGSWGKGEWGIFESDE 168

Query: 158 QDNRLTTP----------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIA 206
            D                   +L   L+  +        +E +S  L  +  D GI+   
Sbjct: 169 SDGTFNNHNAEIRVLTNVDEDHLDHYLTRENLLSAFARYMERTSWKLILNLDDIGIRDSL 228

Query: 207 GSFTNLGRDH---IDYHQTQQAYFNAK----------MRLFEELLPKESPAIIYADDAYS 253
                  +DH   + + +   +   AK           R  +             +   S
Sbjct: 229 ALI----QDHSKILGFCKVFVSGEIAKNPSHNSNVEGTRTTDSSSAGNRVISSNLEKKTS 284

Query: 254 ----KEVMKRAHNAGCRVLSVGYQGKFIHL--------KKVCAIHNKQQVTISVEGKDFD 301
               K + + +     ++ + G Q    +         K +        ++   + K++ 
Sbjct: 285 QIGEKSISQYSKGKVSKIETFGTQDDTTNDVLRDIDSSKIIYYTIESGNLSFRFQEKEYS 344

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F    PGE  + NAL A   C   G     ++  + +   V  R E++G+   G  +Y D
Sbjct: 345 FFLKYPGEHYLKNALAAILACSEAGAPVTELVSQISEYSGVSRRLEYLGSK-NGIEVYDD 403

Query: 362 YAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           Y H    ++ +++++  +   GR I++F                 +LD  +   +    P
Sbjct: 404 YGHHPTEIKAVIQSMEGLKKNGRAIILFQPHRYTRTQNLYKEFAESLDTGESVYLLPIYP 463

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             EDP      E I   +   +   I      + I      L   D L+  G G+
Sbjct: 464 AGEDPIEGVGTELILNSMK--VSAKILPKEISDGIFILKNSLKPGDKLITLGAGN 516


>gi|295113830|emb|CBL32467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus sp.
           7L76]
          Length = 456

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++  +      TN+   H+DYH +++ Y  AK  + + +   ++  + 
Sbjct: 168 MELSSFQLM--GIETFQPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTADDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|209696054|ref|YP_002263984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Aliivibrio
           salmonicida LFI1238]
 gi|226711878|sp|B6ELH7|MURD_ALISL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|208010007|emb|CAQ80330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aliivibrio
           salmonicida LFI1238]
          Length = 442

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 129/332 (38%), Gaps = 46/332 (13%)

Query: 68  AEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ IV +   +L        I+  TP  VV +      LFA  +       ++A+TG++G
Sbjct: 69  ADLIVTNPGIALASSQLQPAIKKGTP--VVGDIE----LFAWAVT----APVIAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V     ++   +G+ +   G                        AL  L  Q     
Sbjct: 119 KSTVTDLTGEMANAAGVKTAVGGNIG-------------------FAALDLL-EQDADLY 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +KL A +F NL  DH+D +Q  + Y  AK+R+F+         I
Sbjct: 159 VLELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRVFDH----ADVCI 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   KE      +            ++  +++   +   +  T  +   +      
Sbjct: 213 VNRDD---KETYPDTADKTLISFGFDTSDEYGCIEENGRLFLAKNNTPIIAANE----LG 265

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+  + N+LVA  L  A G+++   L+ L++ + +  R + V     G R   D   T
Sbjct: 266 LVGKHNIANSLVALALLDAAGVNTNKTLDTLKRYNGLTHRCQ-VVAEMNGVRWVNDSKAT 324

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           + +  +   +  +I     ++V G G   D  
Sbjct: 325 NVASTLAALSGLSIEGKLHLLVGGVGKGADFS 356


>gi|134294696|ref|YP_001118431.1| UDP-N-acetylmuramate [Burkholderia vietnamiensis G4]
 gi|134137853|gb|ABO53596.1| UDP-N-acetylmuramate [Burkholderia vietnamiensis G4]
          Length = 461

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 112/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P+    +        + V+  A      V   G  G +  L     +   ++  + 
Sbjct: 208 VRTVPRVGRIVTNGRSDALERVL--ARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVY 265

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + +   +  + + G+    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 266 SQAQRVGEVAWQVQGDHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGREHSRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +     P   D     +   +           +    ++  +      D ++V   G
Sbjct: 385 ADLVFGYGAPSGRDALGWNLGDALAPLGAKAHAFDDLHLLVKAVVAAARPGDHVLVMSNG 444


>gi|303256684|ref|ZP_07342698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderiales bacterium 1_1_47]
 gi|302860175|gb|EFL83252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderiales bacterium 1_1_47]
          Length = 452

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 133/418 (31%), Gaps = 45/418 (10%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           + P+ +  GA+  ++ +A S  +       N  +      +         L G+H   +L
Sbjct: 53  YDPEQLDAGADLYIIGNAISRGNPLLEEILNRGLPYTSGPQWLQENI---LNGRH---VL 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV GT GK++  S +  I +  GL+   +     I    Q+   +           + L+
Sbjct: 107 AVAGTHGKTTTTSMLAWILEDCGLNPSFL-----IGGVPQNFGHS-----------ARLT 150

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 +  +         R   +          NL  DH D     +A       L   
Sbjct: 151 ESEYFVIEADEYDTAFFDKRSKFVHYSPRTVILNNLEYDHADIFPNLEAIERQFHHLV-R 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     I          V+K                 +  ++        +   +   
Sbjct: 210 TIPSHGKVIFNEASEALHRVLKMGLWTPAESFGTSPVCDWRLVEH-------EGARLFAG 262

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           GK+   F   LPGE  + NA  A    +  G+ +   ++ L +   V  R E  G  + G
Sbjct: 263 GKEVGRFELSLPGEHNLLNASAAVAAAVNAGVSAERAVDALSRFEGVKRRMEVKGEVA-G 321

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIA 413
            ++  D+AH   ++E  +K +R+   +GR++ V          G        +L  AD  
Sbjct: 322 TKVIDDFAHHPTAIEETIKAVRSKYQTGRLLAVLEPRSNTMKLGTMKAQLPGSLVQADKV 381

Query: 414 IVTDDNPRSEDPE---KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    + P       A +        E  +    +   +    + D ++V   G
Sbjct: 382 FC------YQGPAVQWDTAAALAPLGEKAEEFKDLEALVEDVVSQAEQGDTILVMSNG 433


>gi|307289405|ref|ZP_07569359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0109]
 gi|306499660|gb|EFM69023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0109]
 gi|315165142|gb|EFU09159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1302]
          Length = 456

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLEGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|298489161|ref|ZP_07007182.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156361|gb|EFH97460.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 449

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 132/410 (32%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNALSRGNPAVEYVLNKGLPYVSGP----QWLADHVLQD--RWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGDTPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIEM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGQLQGCVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  +L ++ L     V  R E V    RG  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPSLGVQALSAFKSVKRRMEKV-AEVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R  I    II V     +  + G        ++  AD  +      +  D 
Sbjct: 336 AIATTLDGLRKKIGDAPIIAVIEPRSNSMKLGAHRDGLPESVSQADQVVWYAPPNLGWD- 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     A  + G        + +EA I            +V+   G
Sbjct: 395 ---------LAATVAGGSVPSTVCDSLEAIIARVHSQARPGTHIVIMSNG 435


>gi|260913001|ref|ZP_05919486.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
 gi|260632991|gb|EEX51157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
          Length = 434

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 131/394 (33%), Gaps = 56/394 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVVS   +++        +  + V+ +   F          +  + I+A+TG++GKS+V 
Sbjct: 70  IVVSPGIAIKTPEIQTALSAGVKVIGDIELF--------CREASKPIIAITGSNGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + SGL     G                        ALS L  Q      +E S
Sbjct: 122 TLVYEMAKASGLKVGMGGNIG-------------------IPALSLL-EQNYDLYVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  + +  N+  DH+D +   + Y  AK+R++         AI+  +D
Sbjct: 162 SFQLE--TTYSLKATSATVLNVTEDHMDRYIDLEDYRQAKLRIY----HNAKTAIVNTED 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +        ++    +S G +     LK     + KQ      E         L G  
Sbjct: 216 PLT------TIDSLKSAVSFGEENSDYWLKT---ENGKQYFMAKNEMILPCDEIKLVGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  A  +    +   L +   +  RF+     +    I    A    S  
Sbjct: 267 NYMNVLAAIALAQAANVSLEGIRTALREFSGLDHRFQLAHFANGVYWINDSKATNVGSTV 326

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  ++   +G + ++   G  ++     +   I            D           A
Sbjct: 327 AALTGLQ--VAGHLHLLL-GGDGKEADFSELSTLIQQPHIYCYCFGKDG----------A 373

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L + D++++
Sbjct: 374 QLAKLSQQSQLFDTMEQAINALRPNLKEGDMVLL 407


>gi|268591757|ref|ZP_06125978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rettgeri DSM 1131]
 gi|291312718|gb|EFE53171.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rettgeri DSM 1131]
          Length = 436

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 144/402 (35%), Gaps = 60/402 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ IV S   +L        +   I +V +   F          +    I+A+TG++G
Sbjct: 64  QAADLIVASPGIALATPQLQQAAENGIEIVGDIELF--------CREADAPIVAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V S V ++ + +G+S    G   T                    ALS L + G    
Sbjct: 116 KSTVTSLVGEMAKAAGISVGVGGNIGT-------------------PALSLL-NAGHRLY 155

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            +E SS  L+      ++  A +  N+  DH+D +    + Y  AK++++          
Sbjct: 156 VLELSSFQLE--TTSSLEATAATVLNISEDHMDRYPLGLEQYREAKLKIY----HNAQNC 209

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DF 302
           I+   D     +   A++     +S G                 Q+  +  +GK+     
Sbjct: 210 IVNVQD----ILTLPANHTLDECISFGLNSGDYFFDT-------QKRVLVAQGKELLDVN 258

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G+    NAL A  L  A+ I     L+ L++   +  RFE V  N+    I    
Sbjct: 259 EMHLTGQHNYLNALAALALADAVDIPRPACLQVLKEYAGLAHRFELVLFNNGVRWINDSK 318

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    S E  L  +     G I ++   G  +     P+   IA D   +     D    
Sbjct: 319 ATNVGSTEAALNGL--HVDGNIYLLL-GGDGKSADFSPLKQYIAADNYRLYCFGRD---- 371

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               K  A++       +      +++R     L   D++++
Sbjct: 372 ---GKALADMAP--EKSVLTETMEQSLRQIAPQLKAGDMVLL 408


>gi|291276690|ref|YP_003516462.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter mustelae 12198]
 gi|290963884|emb|CBG39720.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter mustelae 12198]
          Length = 490

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 126/352 (35%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+T + GK+S+ +F+ QI +            +TI     D     P    +     
Sbjct: 166 KIIAITASYGKTSIKNFLYQILRTQYQVYATPRSVNTIKGIVSDINENLPPHTEI----- 220

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y+   G       A    L  H         G    +G  H++Y +  +     K  L E
Sbjct: 221 YIVEAGARQKGDIAEIAHLLNH-------QYGIIGEVGEQHLEYFKKLENIMQTKFELLE 273

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   A+I+ D+ + + + K                    L+   A   +    + +
Sbjct: 274 S--NRLEFALIFKDNTFPQYLSKNKKIQYFPT----------ELRNEQANLEETSFELEI 321

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E   + F   + G F ++N   A  L   + I    +   L  L  +P R      N   
Sbjct: 322 EQNFYTFKTNILGAFNIHNLSAAILLGHHLKIPIPTMQRVLGTLQPIPHRLTKEVVN--- 378

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G++ +D +   N L  +L+++R   +  GR +++     + D+     + K      D+A
Sbjct: 379 GKMILDSSFNGN-LNGMLESVRIAGLYDGRKVIITPGIIESDEKSNITLAKAIDSTFDMA 437

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T      E    I ++ I   P  I   ++ +     +    K D+++ A
Sbjct: 438 IIT-----GELNSHILSQHIRR-PQKIVLKDKSQLQNFLLNSTYKGDLILFA 483


>gi|203284712|ref|YP_002222452.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|203284717|ref|YP_002222457.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|201084155|gb|ACH93746.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|201084160|gb|ACH93751.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
          Length = 486

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 144/422 (34%), Gaps = 58/422 (13%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A++ SSAY+  +    + +     P+L      + +   + + Y       + V G+ GK
Sbjct: 93  ALIYSSAYNKDNLPILLEAYELGIPVLSYP---EVIGEISKKYY------SIGVAGSHGK 143

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ A+F+  +    GL    I   S++ +    + L   S +++A+   Y          
Sbjct: 144 TTTAAFLGILFHSLGLQPNLI-LGSSVKNLEDKSSLVGESNVFIAETCEY---------- 192

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                H L               TN+  +H+D+ +  +   +     +   L K    II
Sbjct: 193 ---KGHFL------SFSPDIIVLTNIDYEHVDFFKNYEEVED-IFLQYVNNLKKNGILII 242

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD++    +  +      RV SVG+       K          +     G   D     
Sbjct: 243 NADESNLFNIKNKIIRKDIRVFSVGFNS-LSDFKIEHFEIGDGFLKFDFLG-SIDIRLKT 300

Query: 307 PGEFQVYN---ALVAAGLCIAIGIDSALVLE-----HLEKLHVVPGRFEFVGTNSRGGRI 358
           P    V N   AL+A  L +          +        +   +  R EF+     G   
Sbjct: 301 PLIHNVLNFSVALLALKLFLEEHKKLVWNFDERIKIVAREYMGIKRRMEFI-MEKDGVIY 359

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV-- 415
             DYAH    +E  L  ++    GR IV+ F                  L   D+ I+  
Sbjct: 360 LDDYAHHPKEIESTLLGLKKFYDGRRIVLDFMPHTFTRTKVLFDEFVRVLSNVDVLILHN 419

Query: 416 ------TDDNPR--SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
                  D +P+  S D      ++   +  F E G+ ++ I+    +L + D+ V  G 
Sbjct: 420 IYLSVREDFDPKRLSRDLFLSLRDLNQNVYFFAEIGDSVDFIK---GLLKRNDLFVTMGA 476

Query: 468 GH 469
           G 
Sbjct: 477 GD 478


>gi|15892483|ref|NP_360197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           conorii str. Malish 7]
 gi|30316098|sp|Q92I60|MURD_RICCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15619640|gb|AAL03098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia conorii
           str. Malish 7]
          Length = 500

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 120/361 (33%), Gaps = 82/361 (22%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I +  +     +              +A+TGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVNIAKSFNIPITSDIDLLFAK-------SKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G                     ++   +  S  G     +E S
Sbjct: 120 ALISHILNSSGLDYPVAGNIG------------------VSALQAKASKDG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+  + +ES A+I  D+
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMTCYIAAKSKIFDR-MDQESYAVINIDN 215

Query: 251 AYSKEVMKRAHN----------------------------AGCRVLSV------------ 270
            Y +EV  +                                 C  +S             
Sbjct: 216 DYCREVFIKLQQEQRIKLIPFSVAQILENGISVVDDKISANFCDDISFELQHNSESFRQD 275

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIAIG 326
            +QG+    + +    ++Q +  S+      +  P            N   +  +   IG
Sbjct: 276 EFQGEPAEPECIKIREHRQDLQNSLVSSFMHYAVPFNKNLQGVHNCENIAASYAVAKIIG 335

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITS 381
           ++   +LE +     +P R +++G+ +     + + +  +N++  +     L NI  +  
Sbjct: 336 VEPKKILESISSFQSLPHRMQYIGSINNIS--FYNDSKATNAISAVQSIKALDNIYWLAG 393

Query: 382 G 382
           G
Sbjct: 394 G 394


>gi|302546148|ref|ZP_07298490.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463766|gb|EFL26859.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 486

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 138/414 (33%), Gaps = 57/414 (13%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G E IV +  +      F A  ++  P+    +        A RL G      LAVTGT+
Sbjct: 80  GTELIVTTPGWKPTSPLFLAAEKAGVPVW--GDV-----ELAWRLRGPDSPPWLAVTGTN 132

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +GL +  +G                        +L  +      +
Sbjct: 133 GKTTTVRMLASILEAAGLRTAAVGNIGV--------------------SLLDIVLGETPY 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +         H    ++  +G+  NL  DH+D+H +  AY   K R++E     +   
Sbjct: 173 DVLAVELSSYQLHWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYEG---NQVAC 229

Query: 245 IIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +  A D  ++++++ A    GCR +             V       +  ++   K    L
Sbjct: 230 VYNAADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFVTNRQKSAQEL 289

Query: 304 -----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   P    + NAL AA L  A G+    V + L      P R E V        +
Sbjct: 290 AEVADVNPPAPHNIANALAAAALARAYGVPPQAVRDGLRAFRPDPHRVEHVADVEGVSYV 349

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               A  +++ E  L           IV    G  +      ++   A  L    ++  D
Sbjct: 350 DDSKATNTHAAEASLGAYEH------IVWVAGGLAKGATFDELVLAAAPRLRGAVLIGAD 403

Query: 419 NPRSEDPEKIRAEIIHGIPGF-IEKGNRIE------AIRTAIEMLNKQDVLVVA 465
                    IR  +        +   +R +      A+R A  +    D +++A
Sbjct: 404 R------ALIREALARHAADVPVVDLDRTDTGAMAAAVREAARLARPGDTVLLA 451


>gi|15645360|ref|NP_207534.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           26695]
 gi|2313862|gb|AAD07786.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           26695]
          Length = 493

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 139/352 (39%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITCLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++          +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDYS-----SLVKNIQSTLKGTSFEMLI 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   + GEF  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 GSVWERFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLHKGRKVIVTPGLVESNTESNEALAQKIDGVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|29375575|ref|NP_814729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis V583]
 gi|227555103|ref|ZP_03985150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis HH22]
 gi|257418583|ref|ZP_05595577.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T11]
 gi|30179794|sp|O07108|MURD_ENTFA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29343036|gb|AAO80799.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis V583]
 gi|227175771|gb|EEI56743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis HH22]
 gi|257160411|gb|EEU90371.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T11]
 gi|315168041|gb|EFU12058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1341]
 gi|315574263|gb|EFU86454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0309B]
 gi|315581582|gb|EFU93773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0309A]
          Length = 456

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|217032142|ref|ZP_03437641.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298736442|ref|YP_003728968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
 gi|216946132|gb|EEC24741.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298355632|emb|CBI66504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
          Length = 493

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 141/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQATFNAHASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITHLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++ V        +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDVS-----SLVKNIQSTLKGTSFEMLL 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + GEF  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 DSVWESFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLHKGRKVIVTPGLVESNTESNETLAQKIDGVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASQLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|227517916|ref|ZP_03947965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX0104]
 gi|227074670|gb|EEI12633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX0104]
          Length = 456

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWSIQKNMTAEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALQGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|289804639|ref|ZP_06535268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 132

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +      R++ E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           +  +     D         P++ +    + LS  A R Y +  EN+
Sbjct: 64  IAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENM 109


>gi|116627173|ref|YP_819792.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus thermophilus
           LMD-9]
 gi|122268224|sp|Q03MH6|MURC_STRTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116100450|gb|ABJ65596.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus thermophilus
           LMD-9]
          Length = 442

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +    +    +S+ IG  +   S                    Y 
Sbjct: 106 FGVAGAHGKTSTTGLLSHSMKNITDTSYLIGDGTGRGSANA----------------QYF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY  +    F+A     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D+  +++   A      +   G++         +          +  +
Sbjct: 199 ---QKGLFVYGEDSNLRKITSNAP-----IYYYGFEENDDFMATDIIRTTTGSNFKVKHD 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   +F  P  G   + NA          G D ALV EHL+    V  RF     +   
Sbjct: 251 GQIIGEFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKIISD-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 309 TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEADAVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|326402233|ref|YP_004282314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           multivorum AIU301]
 gi|325049094|dbj|BAJ79432.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidiphilium
           multivorum AIU301]
          Length = 461

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 123/378 (32%), Gaps = 46/378 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                + +A +    PI           LF +          + +TGT+GKS+  + +  
Sbjct: 83  PVPHPEAAAVMARGVPIFTDAEL-----LFRAVRDSGSSARFVGITGTNGKSTTTALLAH 137

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   +G+     G                P+ + L +    L   GV    +E SS+ L+
Sbjct: 138 ILADAGIEVAAGGNLG-------------PAALALPR----LGDDGV--YVLEMSSYMLE 178

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+  ++  AG+  NL  DH+D H     Y  AK RLF      +       D A +  
Sbjct: 179 --RIVNMRFSAGAMLNLTPDHLDRHGNMAGYEAAKSRLFVGQEAGDVAVFGIDDAATAAM 236

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             +        V   G Q   I  +    + +   +       D D    LPG     NA
Sbjct: 237 ATRFEDGKRRIVRISGCQRADIFARGRKLVDHSGVI------ADLDAAAALPGTHNAQNA 290

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             AA L +A+G+   ++   +     +P R   V + + G     D   T+        +
Sbjct: 291 AAAAALALALGVPREVIGRAMVSFPGLPHRQRVVASVA-GVTFIDDSKATNADSAARALD 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK-------I 428
                     +V+  GG    G    +      +A   ++  D P              I
Sbjct: 350 CHE------RLVWIAGGIGKDGGIAPLAPWFSRVAHAVLIGRDAPEFAATLASAGVSCEI 403

Query: 429 RAEIIHGIPGFIEKGNRI 446
              I + +P       RI
Sbjct: 404 AGTIENAVPSAFAAARRI 421


>gi|167766381|ref|ZP_02438434.1| hypothetical protein CLOSS21_00885 [Clostridium sp. SS2/1]
 gi|167711972|gb|EDS22551.1| hypothetical protein CLOSS21_00885 [Clostridium sp. SS2/1]
 gi|291559219|emb|CBL38019.1| folylpolyglutamate synthase/dihydrofolate synthase
           [butyrate-producing bacterium SSC/2]
          Length = 424

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 152/415 (36%), Gaps = 58/415 (13%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L +DN ++ L         +    ++ + GT+GK S  +F+  I + SG   ++ G   
Sbjct: 19  VLGLDNIKELLERLG---NPQDQLKVVHIAGTNGKGSTLAFLAGIFRESG---YRAGRYV 72

Query: 152 TISSFAQDNRLTTPSPIYLAKAL-----------SYLSSQGVTHVSVEASSHGLDQ---- 196
           + +SF  + R          + L             +   G++H ++      L      
Sbjct: 73  SPASFCYEERFRINEENISKEDLCFYMEKIKKISDEMVRDGMSHPTMFEIETALSFLYFL 132

Query: 197 --------------HRLDGI----KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEEL 237
                          RLD      K IA    ++G DH+ +   T +     K  + +E 
Sbjct: 133 DKKVDVVLLETGMGGRLDATNVVKKPIAVIIASIGMDHMQFLGDTIEKIAAEKAGIIKEG 192

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVE 296
            P          ++ ++ + ++A    C+V  V  +G    ++ +    N +  +  S +
Sbjct: 193 CP---VISYNNQESVNEVIKEKAKEMHCKVTFVNSEG----IRVLSESLNGESFSYRSSD 245

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIG----IDSALVLEHLEKLHVVPGRFEFVGT 351
           G+ ++    PL G  Q+ NA +A      I     I      + L K      R   +  
Sbjct: 246 GRCYEKIEIPLLGRHQINNAALALEALNTIRNYYCISEFQTEDGLRK---TIWRGR-IEI 301

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   +  D AH  +  + +L  ++   + R  +++  G   D+    ++  +    A 
Sbjct: 302 LEKDPLVICDGAHNPDGAKSLLNFLQNNFTNRR-LIYIMGVLSDKDYEQMIQILTPMAAK 360

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  V  DN R+   + +   +        E+    E +    +  +K+DV+++ G
Sbjct: 361 VYTVAPDNARALSSKDLAECVRKYHHDVEERQRLKECLEEVKQQADKEDVIIICG 415


>gi|57167794|ref|ZP_00366934.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter coli
           RM2228]
 gi|57020916|gb|EAL57580.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter coli
           RM2228]
          Length = 475

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 123/366 (33%), Gaps = 55/366 (15%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           ++L       I+ +T + GK+S+ +F+ ++ +    +       +T+     D       
Sbjct: 147 AKLQNNPQLKIILITASFGKTSIKNFLYELLKDDFKTYKTPRSVNTLLGIIADINTNLSD 206

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              +     Y++  G                    ++        +G  H++Y +  +  
Sbjct: 207 DTQI-----YIAEAGARVKGDIDVI-------TRFLEPQICIVGEIGNAHLEYFKNIENT 254

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKK 281
              K+                          KR   A     +   + +        L+ 
Sbjct: 255 RKTKLEALNS---------------------KRLEKAFLHTSTQKSEDELILLYDDKLQD 293

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + +     +  I++E K ++F   + G+F   N          +G+    + + + K++ 
Sbjct: 294 IQSSLQGLEFKINLENKTYEFKSQILGDFNAQNLCACILCANYLGVKIEKIQKQVLKINS 353

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
           V  R + +   S+  +  +D +   N   +    K  +    GR ++V     + D+ + 
Sbjct: 354 VEHRLQII---SKEPKFIIDDSFNGNYKGMSASYKLCKNY-KGRKVLVSPGIVEVDKDEN 409

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLN 457
             + KI  +  D+AI+T          ++ A+I            + +A  ++   +   
Sbjct: 410 VKLAKIINECFDLAIIT---------AQVNADIFKKELKIKTIILKEKADLVKVLAKETQ 460

Query: 458 KQDVLV 463
           + D+++
Sbjct: 461 QSDLIL 466


>gi|163787488|ref|ZP_02181935.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877376|gb|EDP71433.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 443

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 111/294 (37%), Gaps = 25/294 (8%)

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLF 234
            +  +   +  +E SS  LD   +   K      TN+  DH+D +    + Y  +K R+ 
Sbjct: 143 QVLDEDYKNYVLEISSFQLDD--IIDFKPKIAVLTNITPDHLDRYDYKFENYIASKFRVV 200

Query: 235 EELLPKESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           E    ++   I  +DD   +E ++    ++      +  V  QG +I    +    +  Q
Sbjct: 201 ENQT-EDDYFIYDSDDQVIEEWLQNNSIQSKKLPFSLTKVVEQGAYIDNNNIIITIDNNQ 259

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +  E         L G+  V NA+ A+ +   + I    + E LE    V  R E V 
Sbjct: 260 IIMPTEN------ITLEGKHNVKNAMAASTVAHLLKIRKQTIRESLENFQGVEHRLEHVL 313

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             ++   I    A   N        + ++ +  + +V   G D+    + +   +   + 
Sbjct: 314 KINKVQYINDSKATNVN---ATYFALDSMDAPTVWIV--GGVDKGNDYKELFPFVNEKVK 368

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I  +  DN       K+     + +   IE     EA++ A ++ N  D +++
Sbjct: 369 AIICLGVDN------AKLFEAFGNMVDVIIETEYMSEAVKIAYKVANTGDNVLL 416


>gi|226226832|ref|YP_002760938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
           aurantiaca T-27]
 gi|226090023|dbj|BAH38468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
           aurantiaca T-27]
          Length = 464

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 133/408 (32%), Gaps = 59/408 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S                 + VV      L L       +     +AVTGT+GK++ 
Sbjct: 75  VVVASPGVPPSAPPLRAAHEAGVPVVGEVEIALRL-------QPALRYIAVTGTNGKTTT 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  + +  G+ +  +G   T                    AL+ L        ++E 
Sbjct: 128 TALIGHLLRALGVDAADVGNIGT-----------------PVSALA-LQETPPAWAALEM 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L  H   GI    G  T L  DH+D + +   Y+  K RLF   + +       AD
Sbjct: 170 SSFQL--HDTPGIYPDVGVLTTLSPDHLDRYTSVAEYYGDKQRLFLNAVSQSRWVAT-AD 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-- 307
               +E+++          +    G         A ++ +   + V G        +P  
Sbjct: 227 SDAVRELVQGIEGQWYWFSTKQTDGMD-------ASYHHESGMLHVLGAPLMARDRVPLA 279

Query: 308 GEFQVYNALVAAG------LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           G+  V N L A             G   A + + +      P R E V        I   
Sbjct: 280 GDHNVANVLAAVLSVMVADASFRTGTARAALADAVATFRAPPHRLETVVHRHDVVWINDS 339

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    S  + L  +   T     VV   G  + +    ++ ++   +A + I       
Sbjct: 340 KATNVASTLVALAGMTRPT-----VVLLGGRHKGEPYTALLPEL-RRIAKVVI-----AY 388

Query: 422 SEDPEKIRAEI---IHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVV 464
            E  + I A++   + G+   ++   R  A  +  A    +  D +++
Sbjct: 389 GEAADTIVADLTAPLAGVVPVVQVHERSFAAVMTRAHAEASAGDAVLL 436


>gi|182624400|ref|ZP_02952184.1| FolC bifunctional protein [Clostridium perfringens D str. JGS1721]
 gi|177910403|gb|EDT72780.1| FolC bifunctional protein [Clostridium perfringens D str. JGS1721]
          Length = 441

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 139/386 (36%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +G                   I+    D        
Sbjct: 41  KFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENIDKDDLAILM 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLDG---IKLIA 206
             + KA+  +   G    +       L  +                  RLD    +    
Sbjct: 101 GDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGGRLDATNVVIPEI 160

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    T +     K  + +  +P     I Y  +  + EV+K   +   
Sbjct: 161 VVLTSISLDHMNILGNTIEEIAKEKCGIIKSGIP----VISYPQEEKALEVIKERCDELG 216

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L V    + I    +    + Q++ +SV  +       L G+ QV N LVA    I +
Sbjct: 217 CNLEV-VNTEDIRNIIIDKEKHVQKIEVSVGDEILKIDLGLLGDHQVKNFLVALKTLIKL 275

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                 I +  + E  +K+  + GR E +  N     + +D AH  + +  +  +I    
Sbjct: 276 RNNRVNISNESIKEGFKKVRWI-GRMEVLNEN---PLVVIDGAHNIDGIRNLRNSIDKYF 331

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + I +   G   D+    ++ +I   +  + IV   + R+ED E +  ++   +    
Sbjct: 332 NFKNITLIL-GVLGDKQVDEMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVF 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  EA   A  + N+ D+L++ G
Sbjct: 391 KFKDYKEAYNKAYSLTNEDDLLLICG 416


>gi|167626522|ref|YP_001677022.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596523|gb|ABZ86521.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 456

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 22/285 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSGYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI- 293
            ++           DD   K +     +   +V S       + +       +  +  + 
Sbjct: 211 RKMPSTAKIIYNAKDDNVQKIISMGCWSELVKVNS------DLAISITKHTLDYSKFELC 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + G + +  + L GE    NA+ A  +   + I   ++ + LE    V  R E V ++ 
Sbjct: 265 DINGNNVEVSWGLIGEHNALNAMSAYAVAKQLNISDEVIKDALESFKGVKRRLE-VLSHQ 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               +Y D+AH   S+++ L+ +R       ++           +
Sbjct: 324 DNVTLYDDFAHHPTSIKLTLEAVRNKAKDAYVIALIDPRSNTMRQ 368


>gi|15602005|ref|NP_245077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|30316119|sp|Q9CPB0|MURD_PASMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12720355|gb|AAK02224.1| MurD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 434

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 137/394 (34%), Gaps = 56/394 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S   +++           I V+ +   F          +  + I+A+TG++GKS+V 
Sbjct: 70  IIISPGLAVKTPEIQTALAAGIEVIGDIELF--------CREAKKPIIAITGSNGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  +   +GL     G                        ALS L  Q      +E S
Sbjct: 122 SLVAHMVNAAGLKVGMGGNIG-------------------IPALSLL-EQAHDMYVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  + +  N+  DH++ +   + Y  AK++++         A+I A+D
Sbjct: 162 SFQLE--TTYSLKATSATVLNISEDHMNRYVDLEDYRQAKLKIY----HHAQTAVINAED 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A +      A +     +S G       LK       +  +    E         L G  
Sbjct: 216 ALT------AMDGLKNGVSFGEDNADYWLKT---EKGRSYLMAKDERVLACDEMKLVGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A  L  A GI    +   L + + +  RF+     + G R   D   T+    
Sbjct: 267 NYMNALAAIALAQAAGIPLESIRRALREFNGLDHRFQLAHF-AHGVRWVNDSKATNVGST 325

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       +     +++ G G   D        ++A  +    I+       +D E++ A
Sbjct: 326 VAALTGLQLNGTLHLLLGGDGKGADFS------ELASLINQPNIIC--YCFGQDGEQLAA 377

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 P         EAI      L+  D++++
Sbjct: 378 L----SPRSQRFSTMEEAINALRPTLSAGDMVLL 407


>gi|300023675|ref|YP_003756286.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525496|gb|ADJ23965.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 437

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 119/366 (32%), Gaps = 30/366 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A     +    I+AVTG+S K++  + +  I           G +   S F  +     
Sbjct: 27  IAKIKRERTSATIIAVTGSSAKTTTVALLSHILA---------GHSKVTSQFLCNGYGHA 77

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                    L+  S    + +       G        +K      T +  +H    ++ +
Sbjct: 78  IDA-----LLNLRSDTRYSVIEQGTKKPGHIPQAAKLLKPDLAIITLVAIEHYATLKSIE 132

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           A    K  L E  +P +   ++  DD   + +  R      R ++ G  G       +  
Sbjct: 133 AVAQEKSALVEA-VPDDGLVVLNFDDPNVRAMADRTR---ARSITFGTTGGDYLATNIRT 188

Query: 285 IHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 +     G    D    L G         AA   + +G+ +  V   +     + 
Sbjct: 189 DVCGLLLLTLTGGGHTIDLETQLLGAHNWLTIAAAATSALELGVPAQTVRARIASFAPIH 248

Query: 344 GRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           GR     T   G RI +D A    +S+ + L+ +R+IT+ +   + G   D         
Sbjct: 249 GRMSPHTTPG-GTRIILDCAKAPYHSIFLPLETLRSITAPKKRFILGQISDYAGNATKKY 307

Query: 403 ---GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNK 458
                 A+ +AD        P +      +A+I  G          IEA+     +   K
Sbjct: 308 RDAYAAAVQVADEVCFVG--PWAHKARAPQADIDSGKFRAFA---NIEALAAHLRDTAVK 362

Query: 459 QDVLVV 464
            +V++V
Sbjct: 363 DEVILV 368


>gi|163816707|ref|ZP_02208070.1| hypothetical protein COPEUT_02897 [Coprococcus eutactus ATCC 27759]
 gi|158447964|gb|EDP24959.1| hypothetical protein COPEUT_02897 [Coprococcus eutactus ATCC 27759]
          Length = 457

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 100/283 (35%), Gaps = 26/283 (9%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  NL  DH++ H T + Y N K  + +     +   ++ 
Sbjct: 166 EISSFQLE--TVIDFHPNVSAILNLTPDHLNRHYTFENYGNVKFSITKNQTMDD-VTVLN 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            DD +++ + ++A +    V        F  L+K       +   I +E  D        
Sbjct: 223 YDDEHTRAMGEKAKSHVRVVY-------FSRLEKPAGGVYVEDGNIVLEDGDKKINVLAL 275

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   V N L A G+   +G+   ++         V  R E+V T +  G  Y +
Sbjct: 276 SDLKLLGAHNVENVLAAVGISYYMGVPVDVIRNVATSFKAVEHRIEYVDTIN--GVAYYN 333

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            +  +N    I      ++   +I   G G D+       +      +  + ++     +
Sbjct: 334 DSKGTNPDAAIKGIQAMVSPTYLI---GGGYDKGSEYDEWIEAFGGKVKCLVLIGQTAQK 390

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             D  K      HG    + + N  EA+    E     D +++
Sbjct: 391 IADCAK-----RHGFNSIVFEENLQEAVAYCHENAVDGDAVLL 428


>gi|118497129|ref|YP_898179.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. novicida U112]
 gi|194323427|ref|ZP_03057204.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. novicida FTE]
 gi|118423035|gb|ABK89425.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella novicida U112]
 gi|194322282|gb|EDX19763.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella tularensis subsp. novicida FTE]
          Length = 456

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 103/285 (36%), Gaps = 22/285 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI- 293
            ++           DD   K +     +   +V S       + +       +  +  + 
Sbjct: 211 RKMSSTAKIIYNAKDDNVQKIISMGCWSELVKVNS------DLGISITKHTLDYSKFELC 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + G + +  + L GE    NA+ A  +   + I   +V + LE    V  R E V ++ 
Sbjct: 265 DINGNNVEVSWGLIGEHNALNAMSAYAVAKQLNISDEVVKDALESFRGVKRRLE-VLSHQ 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 324 DNITLYDDFAHHPTSIKLTLEAVRNKAKVAYVVALIDPRSNTMRQ 368


>gi|255974062|ref|ZP_05424648.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T2]
 gi|256957086|ref|ZP_05561257.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis DS5]
 gi|257077882|ref|ZP_05572243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis JH1]
 gi|294780582|ref|ZP_06745945.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis PC1.1]
 gi|307268073|ref|ZP_07549461.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4248]
 gi|307278956|ref|ZP_07560015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0860]
 gi|312901048|ref|ZP_07760339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0470]
 gi|255966934|gb|EET97556.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T2]
 gi|256947582|gb|EEU64214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis DS5]
 gi|256985912|gb|EEU73214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis JH1]
 gi|294452409|gb|EFG20848.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis PC1.1]
 gi|306504343|gb|EFM73554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0860]
 gi|306515714|gb|EFM84241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4248]
 gi|311291874|gb|EFQ70430.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0470]
 gi|315031721|gb|EFT43653.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0017]
 gi|315034222|gb|EFT46154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0027]
 gi|315147944|gb|EFT91960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4244]
 gi|329574355|gb|EGG55927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TX1467]
          Length = 456

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|294791080|ref|ZP_06756238.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
 gi|294458977|gb|EFG27330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
          Length = 499

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 138/444 (31%), Gaps = 79/444 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              +V S  +S      T  +   I ++        + A       P   + +TGT+GK+
Sbjct: 49  VSLVVTSPGFSPHSDFLTRVAARGIPIISEVEFAWQIRARNPISGQPAAWIGITGTNGKT 108

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S      +I Q + L++  +G      S                        +    + V
Sbjct: 109 STTEMTAEILQAASLAAPAVGNIGVPVS-------------------QAAVDENNQALVV 149

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L  H    ++L A + TNL  DH+D+H   + Y   K R+++ +   +   +  
Sbjct: 150 ELSSFQL--HYTYSLQLEAAAITNLADDHLDWHGGFENYVADKARVYQHV---KKALVYN 204

Query: 248 ADDA----------------YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ADD                  ++   +   ++ C  +             +       + 
Sbjct: 205 ADDPRVSQLARQARQAQLAQPAQLAQQAQSDSTCLQVGFTLGQPADGQVGIDQGWIVSRT 264

Query: 292 TISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +  +G+    L   P             + +AL A  L    G+ +   L  L+     
Sbjct: 265 PLIPQGR-LAALTDFPHLTEPDGTVYPHLLADALCALCLSAGYGVPAQTALSALQGFAPG 323

Query: 343 PGRFEFVGTNSR-------------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             R + V    +             G   ++D +  +N+               I +   
Sbjct: 324 GHRIQKVAVYHKHSANPDSANSPSSGDIRFIDDSKATNAHAAAASLSSFPDQSVIWI--A 381

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGN- 444
            G  +      ++ K    +    I+       +D  +I   +    P      I+ G+ 
Sbjct: 382 GGLSKGAHFDDLVAKQKKVIKAAVII------GQDQSQILHSLHSQAPDIPYTCIDPGHK 435

Query: 445 ---RIEAIRTAIEMLNKQDVLVVA 465
                EA+  A+      +V+++A
Sbjct: 436 NSIMKEAVAAAVSYAQPGNVVLLA 459


>gi|258542968|ref|YP_003188401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634046|dbj|BAI00022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637106|dbj|BAI03075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640158|dbj|BAI06120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643215|dbj|BAI09170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646270|dbj|BAI12218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649323|dbj|BAI15264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652309|dbj|BAI18243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655367|dbj|BAI21294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 471

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 90/247 (36%), Gaps = 29/247 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TGT+GKS+  + +  I   + L     G                P+ +    AL
Sbjct: 124 ARFVGITGTNGKSTTTTLLAHILAEAKLPVAAGGNLG-------------PAAL----AL 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            +LS  GV    +E SS+ L+  RLD +   A    NL  DH+D H     Y  AK R+F
Sbjct: 167 PFLSDNGV--YVLEMSSYMLE--RLDTLHFDAACLLNLTPDHLDRHAGMDGYAQAKKRVF 222

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                K+  A+I  DD + + +     +   +  ++                      I+
Sbjct: 223 TGQTDKD-LAVIGVDDTWCRAIAAELEHDPAKCETISGTNPACSYYGKDGAIWHHSTRIA 281

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             G        LPG     NA  A  +   +G+  A + + +     +P R + V  +  
Sbjct: 282 QTGPS------LPGTHNAENAAAAIAIARFLGVPDATIAQAVASFPGLPHRQKLV-ASCN 334

Query: 355 GGRIYVD 361
           G     D
Sbjct: 335 GVDFVDD 341


>gi|55820336|ref|YP_138778.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus thermophilus
           LMG 18311]
 gi|55822227|ref|YP_140668.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus thermophilus
           CNRZ1066]
 gi|81559867|sp|Q5M1J9|MURC_STRT1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81561043|sp|Q5M641|MURC_STRT2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|55736321|gb|AAV59963.1| UDP-N-acetyl muramate-alanine ligase [Streptococcus thermophilus
           LMG 18311]
 gi|55738212|gb|AAV61853.1| UDP-N-acetyl muramate-alanine ligase [Streptococcus thermophilus
           CNRZ1066]
          Length = 447

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +    +    +S+ IG  +   S                    Y 
Sbjct: 111 FGVAGAHGKTSTTGLLSHSMKNITDTSYLIGDGTGRGSANA----------------QYF 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY  +    F+A     +++
Sbjct: 155 VFEADEYERHFMPYH-----------PAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 203

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D+  +++   A      +   G++         +          +  +
Sbjct: 204 ---QKGLFVYGEDSNLRKITSNAP-----IYYYGFEENDDFMATDIIRTTTGSNFKVKHD 255

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   +F  P  G   + NA          G D ALV EHL+    V  RF     +   
Sbjct: 256 GQIIGEFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKIISD-- 313

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 314 TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEADAVY 373

Query: 415 V 415
           +
Sbjct: 374 L 374


>gi|229586685|ref|YP_002845186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           africae ESF-5]
 gi|228021735|gb|ACP53443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia africae
           ESF-5]
          Length = 500

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 119/361 (32%), Gaps = 82/361 (22%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I +  +     +              +A+TGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVNIAKSFSIPITSDIDLLFAK-------SKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G                     ++   +  S  G     +E S
Sbjct: 120 ALISHILNSSGLDYPVAGNIG------------------VSALQAKASKDG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+  + +ES A+I  D+
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMTCYIAAKSKIFDR-MDQESYAVINIDN 215

Query: 251 AYSKEVMKRAHNAGCRVL----------------------------------------SV 270
            Y +EV  +        L                                          
Sbjct: 216 DYCREVFIKLQQEQRIKLIPFSVAQILENGISVVDDKISANFFDDISFELQHNSESLRQY 275

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIAIG 326
            +QG+ +  + +    ++Q +  S+      +  P            N   +  +   IG
Sbjct: 276 EFQGEPVEPECIKIREHRQDLQNSLVSSFMHYAVPFNKNLQGVHNCENIAASYAVAKIIG 335

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITS 381
           ++   +LE +     +P R +++G+ +     + + +  +N++  +     L NI  +  
Sbjct: 336 VEPKKILESISSFQSLPHRMQYIGSINNIS--FYNDSKATNAISAVQSIKALDNIYWLAG 393

Query: 382 G 382
           G
Sbjct: 394 G 394


>gi|149194595|ref|ZP_01871691.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2]
 gi|149135339|gb|EDM23819.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2]
          Length = 469

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 115/303 (37%), Gaps = 38/303 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+ GK+S+ +FV Q+ +    +       +TI     D   + P    +     
Sbjct: 154 KIITITGSYGKTSIKNFVYQLLKDDFKAYKTPRSVNTIKGIILDINTSLPEDTEI----- 208

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A   G  +  +  ++        +G  H++Y +T +     K+ +FE
Sbjct: 209 YITEAG-------ARERGDIKTIVKFLENHYAILGKIGPQHLEYFKTIENIEKTKLEVFE 261

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +  +    D  Y + V+K                       + A   K +  + +
Sbjct: 262 SNNLIKGFSY---DIPYRENVIKIKDKIH----------------NIKATLEKLEWDLEI 302

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+   F   + GEF   N  +A    +   +D   + E + KL  +P R + +     G
Sbjct: 303 NGELHHFECNILGEFNAINISLAIYQALEF-LDIETIKEKVLKLEPIPHRLQKIEV---G 358

Query: 356 GRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G+I +D +   N   +    K I+T   GR I+V     + ++     + K      D+A
Sbjct: 359 GKIIIDDSFNGNIEGMLKSFKLIKTH-PGRKIIVTPGIIEGNENLNIKLAKAINKTFDLA 417

Query: 414 IVT 416
           I+T
Sbjct: 418 IIT 420


>gi|56416531|ref|YP_153605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma
           marginale str. St. Maries]
 gi|62900477|sp|Q5PBH9|MURD_ANAMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56387763|gb|AAV86350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaplasma
           marginale str. St. Maries]
          Length = 438

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 117/351 (33%), Gaps = 54/351 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  ++ VTGT+GKS+    +  I  R+G+ S   G                    
Sbjct: 89  FCRSRPARLIGVTGTNGKSTTVELIGWILNRAGIDSETGGNIG----------------- 131

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                LS    QG     +E SS+ L+  R  G+ L  G   N+  +H+D +     Y  
Sbjct: 132 --KGVLSL--PQGKAAYILELSSYQLELMR--GVNLDVGVILNITPNHLDVYSNMADYIA 185

Query: 229 AKMRL--FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           AK R+  F  LL           D+ +  + +          +VG   +F   KK+    
Sbjct: 186 AKGRILEFSNLLVA------NCGDSNTAHLCE----------NVGNMVEFSCGKKLARGV 229

Query: 287 NKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +     I  +G+  +     +       N   +  +  ++G+   +++  + +   +  R
Sbjct: 230 SVLDGRIYFQGRVAEIGGLKIDSASNAENIAASYAVAKSLGVSDEVIMASIREFPGLRHR 289

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + V   +    +    A T+ S+   L +   +           G  +D G  PI+   
Sbjct: 290 NQVVAEVANVTFVNDSKATTAASVAKALVSRENVYW------IAGGKSKDGGIEPILSLY 343

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           A  +    +V       E  +     +       +   +   A++ A    
Sbjct: 344 ANRIRKAFLV------GEAADMFAVSLQRARVEHVMCYDVYNAVQIAFAEA 388


>gi|291547126|emb|CBL20234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus sp.
           SR1/5]
          Length = 451

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 104/293 (35%), Gaps = 26/293 (8%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  +  +    E SS  L+   +D  +    +  N+  DH++ H T + Y   K  + + 
Sbjct: 153 LEMREDSVTVAEISSFQLE--TIDQFRPKVSAILNITEDHLNRHHTMEEYIRVKELITKN 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             P++   + Y D+     + K   N   +V+        +         +  Q+ +  E
Sbjct: 211 QGPEDVCVLNYEDEV----LRKFGENIVPKVVYFS----SLRKLDQGIYLDGDQIILKTE 262

Query: 297 GKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++   +      + G     N + AA +    G+    + + + +   VP R E+V   
Sbjct: 263 KEEIPIVKTEELKILGRHNHENVMAAAAMAYYAGVSVESIRKSVCEFVAVPHRIEYVTEK 322

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +             ++    ++ +   T     ++ G G D++      +      +  +
Sbjct: 323 NGVAYYNDSKGTNPDAAIKGIQAMNRPT-----LLIGGGYDKESSYDEWIESFDGKVRYL 377

Query: 413 AIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++       +  EKI+A     G    I   +  EA+R   E  N  D +++
Sbjct: 378 VLI------GQTKEKIKAAAERLGFTDIILCEDLKEAVRVCAEKANPGDAVLL 424


>gi|257081246|ref|ZP_05575607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis E1Sol]
 gi|257083904|ref|ZP_05578265.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Fly1]
 gi|300859813|ref|ZP_07105901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TUSoD Ef11]
 gi|256989276|gb|EEU76578.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis E1Sol]
 gi|256991934|gb|EEU79236.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Fly1]
 gi|300850631|gb|EFK78380.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TUSoD Ef11]
 gi|315144378|gb|EFT88394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2141]
 gi|315162942|gb|EFU06959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0645]
          Length = 456

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +   ++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTADDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|238650901|ref|YP_002916757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
 gi|238624999|gb|ACR47705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
          Length = 500

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 121/361 (33%), Gaps = 82/361 (22%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I +  +     +              +A+TGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVNIAKSFNIPITSDIDLLFAK-------SKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G                     ++   +  S  G     +E S
Sbjct: 120 ALISHILNSSGLDYPVAGNIG------------------VSALQAKASKDG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+  + +ES A+I  D+
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMPCYIAAKSKIFDR-MDQESYAVINIDN 215

Query: 251 AYSKEV-MKRAHNAGCRVLSVG-------------------------------------- 271
            Y +EV +K       +++                                         
Sbjct: 216 DYCREVFIKLQQEQRIKLIPFSVTQILENGISVVDDKISANFFDDISFELQHNSESFRQD 275

Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIAIG 326
            +QG+    + +    ++Q +  S+      +  P            N   +  +   IG
Sbjct: 276 EFQGEPAEPECIKIREHRQDLQNSLVSSFMHYAVPFNKNLQGIHNCENIAASYAVAKIIG 335

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITS 381
           ++   +LE +     +P R +++G+ +     + + +  +N++  +     L NI  +  
Sbjct: 336 VEPKKILESISSFQSLPHRMQYIGSINNIS--FYNDSKATNAISAVQSIKALDNIYWLAG 393

Query: 382 G 382
           G
Sbjct: 394 G 394


>gi|322517501|ref|ZP_08070373.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus vestibularis
           ATCC 49124]
 gi|322123877|gb|EFX95440.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus vestibularis
           ATCC 49124]
          Length = 442

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +    +    +S+ IG  +   S                    Y 
Sbjct: 106 FGVAGAHGKTSTTGLLSHAMKNITDTSYVIGDGTGRGSANA----------------QYF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY  +    F+A     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D+  +++   A      +   G++        ++          +  +
Sbjct: 199 ---QKGLFVYGEDSNLRKITSNAP-----IYYYGFEENDDFMATEIVRTTTGSNFNVKHD 250

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  P  G   + NA          G D ALV EHL+    V  RF     +   
Sbjct: 251 GQIIGKFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKVISD-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 309 TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEADAVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|312277651|gb|ADQ62308.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus thermophilus
           ND03]
          Length = 442

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +    +    +S+ IG  +   S                    Y 
Sbjct: 106 FGVAGAHGKTSTTGLLSHSMKNITDTSYLIGDGTGRGSANA----------------QYF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY  +    F+A     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D+  +++   A      +   G++         +          +  +
Sbjct: 199 ---QKGLFVYGEDSNLRKITSNAP-----IYYYGFEENDDFMATDIIRTTTGSNFKVKHD 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   +F  P  G   + NA          G D ALV EHL+    V  RF     +   
Sbjct: 251 GQIIGEFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKIISD-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 309 TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEADAVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|254441842|ref|ZP_05055335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
 gi|198251920|gb|EDY76235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
          Length = 465

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 139/398 (34%), Gaps = 49/398 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
                  +  +    P  V ++   F   FA+  + +      ++AVTG++GKS+ ++ +
Sbjct: 81  PAPHPAIARAMAEGCP--VDNDIGLFFRSFATSEWDEFDSIPKVIAVTGSNGKSTTSALI 138

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +G      G                         L    +     + +E SS+ 
Sbjct: 139 YHILEHAGRPVQLGGNIG-------------------RGVLDLDEAHDGEVIVLELSSYQ 179

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +D  R   +      FTNL  DH+D H     YF AK RLF E  P  +   +  D+A  
Sbjct: 180 IDLAR--ALTPDVAVFTNLTPDHLDRHAGHGGYFAAKRRLFAEGGPDRAVIGV--DEAEG 235

Query: 254 KEVMKRAHN--AGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             +  +     +  RV+ V       G    +       N+ +    V   D   +  LP
Sbjct: 236 HYIANQLSEGPSDDRVIRVSSGQKLDGIGWSVFARKRFLNEYRKGRQVGSIDLRAIAGLP 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA  A   C A+GI   ++   L     +P R + +  ++ G R   D   T+ 
Sbjct: 296 GVHNHQNACAAYAACRALGIGPRVIEAALISFKGLPHRSQLIAEHA-GVRFVNDSKATN- 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++   K +      R I     G ++D G   ++    +  A   I         +   
Sbjct: 354 -VDAAAKALAAFDKVRWIC---GGLEKDGGLDALLPAPTVVKA-YVI-------GREAAA 401

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             A  + G+      G+   A+  A       + +++A
Sbjct: 402 -FAMKLKGL-DVEVCGDMATAVTQAAADAQAGETVLLA 437


>gi|116071782|ref|ZP_01469050.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. BL107]
 gi|116065405|gb|EAU71163.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. BL107]
          Length = 448

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 120/422 (28%), Gaps = 64/422 (15%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +V+S+A      +          I    +    L            +  +AV G+ GK+
Sbjct: 57  VVVISTAIPDTNPELQNARAHQLAIWHRSDLLAALID---------QQASIAVAGSHGKT 107

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + ++ +  +   +G       PT+ I            S            S G      
Sbjct: 108 TTSTLITTLLIEAGED-----PTAVIGGVVPCLGSNGHSGQGRLLVAEADESDGS----- 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      L       G  TNL  DH D+++      +   R            I  
Sbjct: 158 -----------LVKFSPSLGVITNLELDHTDHYKGLDDLISTLQRFGRGC----ERLIAN 202

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            DD     +++          +   +        +    ++        G    DF  P+
Sbjct: 203 YDDP----ILQEHFEPTAWWSNQQSENIAFAALPLQLDGDRCTARFYENGSAVGDFTLPM 258

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NA  A   C   G+    +++ L +L     RF+  GT   G  I  DYAH  
Sbjct: 259 AGLHNLSNATAALAACRMEGVPFEALVKGLAQLQAPGRRFDLRGTWE-GRHIVDDYAHHP 317

Query: 367 NSLEMILKNIRTIT----------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + +   L   + +             R++ VF         +       AL   D  ++ 
Sbjct: 318 SEVRATLTMAQLMVSSGRSPLPSSPQRLVAVFQPHRFSRTQQFFEAFAEALQNCDALLLA 377

Query: 417 DDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML--------NKQDVLVVAG 466
                 E   P      +   I     + +   A+   ++ L           D+++  G
Sbjct: 378 PVYAAGEQTIPGVCSNALAQRIRSL--RPDLEIAVADDLDQLTDLVKQRSRPDDLVLAMG 435

Query: 467 KG 468
            G
Sbjct: 436 AG 437


>gi|330877534|gb|EGH11683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 449

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 128/407 (31%), Gaps = 45/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGETPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V+K        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIKM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGELQGAVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL        +G+   L ++ L     V  R E V  + RG  IY D+AH   
Sbjct: 277 GLHNVANALATLAAARHVGVVPLLGVQALSSFKSVKRRMEKV-ADVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R       I+            G        ++  AD  +          P
Sbjct: 336 AIATTLDGLRKKVGDAPIIAVVEPRSNSMKLGAHRDGLPESVQQADQVV-------WYAP 388

Query: 426 EKIRAEIIHGIPGFIEKG---NRIEA-IRTAIEMLNKQDVLVVAGKG 468
             +  ++   + G        + +EA I            +V+   G
Sbjct: 389 PNLGWDLAATVAGGTVPALVCDSLEAIIAQVKSQAQPGTHIVIMSNG 435


>gi|330959912|gb|EGH60172.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 449

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 129/410 (31%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPAVEYVLNNGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGETPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V+K        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALTRVIKM--GCWTPVQTTGQDGQW---QARLLSEDGSRFEVLFEGELQGAVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL        +G+   L ++ L     V  R E V  + RG  IY D+AH   
Sbjct: 277 GLHNVANALATLAAARHVGVVPLLGVQALSAFKSVKRRMEKV-ADVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R       I+            G        ++  AD  +      +  D 
Sbjct: 336 AIATTLDGLRKKVGDAPIIAVIEPRSNSMKLGAHRDGLPESVQQADQVVWYAPPNLGWD- 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     A  + G    +   + +EA I     +      +V+   G
Sbjct: 395 ---------LAATVAGGSVPLAVCDSLEAIIAHVQRLAQPGTHIVIMSNG 435


>gi|254994751|ref|ZP_05276941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Mississippi]
 gi|255004003|ref|ZP_05278804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Virginia]
          Length = 454

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 117/351 (33%), Gaps = 54/351 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  ++ VTGT+GKS+    +  I  R+G+ S   G                    
Sbjct: 105 FCRSRPARLIGVTGTNGKSTTVELIGWILNRAGIDSETGGNIG----------------- 147

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                LS    QG     +E SS+ L+  R  G+ L  G   N+  +H+D +     Y  
Sbjct: 148 --KGVLSL--PQGKAAYILELSSYQLELMR--GVNLDVGVILNITPNHLDVYSNMADYIA 201

Query: 229 AKMRL--FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           AK R+  F  LL           D+ +  + +          +VG   +F   KK+    
Sbjct: 202 AKGRILEFSNLLVA------NCGDSNTAHLCE----------NVGNMVEFSCGKKLARGV 245

Query: 287 NKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +     I  +G+  +     +       N   +  +  ++G+   +++  + +   +  R
Sbjct: 246 SVLDGRIYFQGRVAEIGGLKIDSASNAENIAASYAVAKSLGVSDEVIMASIREFPGLRHR 305

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + V   +    +    A T+ S+   L +   +           G  +D G  PI+   
Sbjct: 306 NQVVAEVANVTFVNDSKATTAASVAKALVSRENVYW------IAGGKSKDGGIEPILSLY 359

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           A  +    +V       E  +     +       +   +   A++ A    
Sbjct: 360 ANRIRKAFLV------GEAADMFAVSLQRARVEHVMCYDVYNAVQIAFAEA 404


>gi|312864088|ref|ZP_07724324.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus vestibularis
           F0396]
 gi|311100501|gb|EFQ58708.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus vestibularis
           F0396]
          Length = 442

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
             V G  GK+S    +    +    +S+ IG  +   S                    Y 
Sbjct: 106 FGVAGAHGKTSTTGLLSHAMKNITDTSYLIGDGTGRGSANA----------------QYF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY  +    F+A     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PAYSIITNIDFDHPDYFTSIDDVFSAFDDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D+  +++   A      +   G++        ++          +  +
Sbjct: 199 ---QKGLFVYGEDSNLRKITSNAP-----IYYYGFEENDDFMATEIVRTTTGSNFNVKHD 250

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  P  G   + NA          G D ALV EHL+    V  RF     +   
Sbjct: 251 GQIIGKFHVPAYGRHNILNATAVIANLYVAGFDMALVAEHLKTFSGVKRRFTEKVISD-- 308

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I  D+AH    +   L   R    S  I+ +F                 AL+ AD   
Sbjct: 309 TVIIDDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAEALNEADAVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|301168123|emb|CBW27709.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bacteriovorax marinus SJ]
          Length = 497

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 130/368 (35%), Gaps = 42/368 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIG--PTSTISSFAQDNRLTTPSPIYLAK 172
           N++ + GT GK++    + Q+ ++ G +  + IG       SS   D +           
Sbjct: 140 NVVGIAGTHGKTTTTYLMTQVFEKLGHNPGYFIGGVVDGRKSSTLGDGKYFFIESDEYDS 199

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                           A    + + R   I  +    T+L  DH D     +   N    
Sbjct: 200 ----------------AYFEKISKFRSYSIDHLI--LTSLEFDHADIFNDIEDIKNE--- 238

Query: 233 LFEELLPKESPAIIYADDAY--SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            F  +L      +IY D++Y  + E++            + Y  +   +K V        
Sbjct: 239 -FRAMLDSFKGKLIY-DNSYKATNELVSEYGKDFKENFLIAYGEENPKIKSVAKD--GTS 294

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            ++  +G + DF   L G+  + N        +  GI+   +   +  L +V  R E  G
Sbjct: 295 FSLIWKGGELDFKTNLVGKHNILNLSSVILFALGEGIEYENIKSSITNLKLVRRRQEVRG 354

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALD 408
              +   +  D+AH   ++E+  + I+ +       +V+                  AL 
Sbjct: 355 -KYQEAIVIDDFAHHPRAVELTTEGIKNLYPEKKVKVVIEPNSATARSDIFQSEFATALK 413

Query: 409 LADIAIV------TDDN-PRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
            AD  +       T     +  D  KI +E+   G+ G I+  N  + ++   ++ +K  
Sbjct: 414 CADYVVFAKPQRHTSVKGAKDLDGHKILSELEKIGVKGTIQ-TNLEDLVKEINKIADKDT 472

Query: 461 VLVVAGKG 468
           VL+V   G
Sbjct: 473 VLLVLSNG 480


>gi|222099426|ref|YP_002533994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
 gi|254766063|sp|B9K6P5|MURD_THENN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221571816|gb|ACM22628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
          Length = 432

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 133/383 (34%), Gaps = 64/383 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           E ++ +TGT+GKS+ A+ +       GL  F  G   T +                    
Sbjct: 102 EKVIGITGTNGKSTSAALMHHALSHRGLKVFLGGNFGTPAV------------------- 142

Query: 175 SYLSSQGVTHVSVEASSHGL---DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                +   +  +E SS  L   ++ R+           N+  DH+D+H + + Y N+K 
Sbjct: 143 -EALREDYDYYVLEVSSFQLFWCERPRVSRF-----VLLNISEDHLDWHSSFKEYLNSK- 195

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L      +E    +Y  +  + E + R         +                   ++ 
Sbjct: 196 -LKPAFFQEEKDTFVYNKNIETLEDLSRVKPKKIPFWT--------------EDTFVEEN 240

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++GK F      P +    N L  + L   +  D    L+ L     +P R EF+G 
Sbjct: 241 RLVLQGKSFPLPGSYPLQ-MKENILAVSVLYNELFGDVEGFLDSLRSFKPLPHRMEFLG- 298

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +G   Y D   T  S   +L  +        +++  CG  +++     + +    +  
Sbjct: 299 KIKGRSFYNDSKAT--STHAVLGALSNF---DRVILIMCGIGKNENYSVFIERARPRIKH 353

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + +            +I  ++   +    +    +  EA R A+E+  + DV++ +  G 
Sbjct: 354 LIVF----------GEIYRDLRPFLSNVPYSIVSDLEEAFRKALEVSEEGDVILFS-PGG 402

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
            +  +  N  K+     +I    
Sbjct: 403 ASFDMYENYAKRGEHFREIFERY 425


>gi|207721506|ref|YP_002251946.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum MolK2]
 gi|206586666|emb|CAQ17252.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum MolK2]
          Length = 550

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 146/440 (33%), Gaps = 61/440 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN------TPILVVDNTRKFLSLFASRL 109
           G  F P  +  G   + +S   S  D +     +       P+        F    A   
Sbjct: 106 GGPFAPSLLE-GVTLVAISPGLSPLDAAVAALLDGARARTVPVW--GEIELFARALAGLK 162

Query: 110 YGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
             + +   +LA+TGT+GK++  +    + +R+G +   +G    IS  A D         
Sbjct: 163 SAQGYAPRVLAITGTNGKTTTTALTGALARRAGKT---VGVAGNISPSALDKLTECVDAG 219

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                +E SS  L+      +   A +  N+ +DH+D+H +  AY  
Sbjct: 220 TLP-----------DVWVLELSSFQLETT--HTLAAAAATILNITQDHLDWHGSMAAYAA 266

Query: 229 AKMRLFEE-----LLPKESPAIIYA-----------DDAYSKEVMKRA-----HNAGCRV 267
           AK R+F       L  +++  + +A           D+  + E +        H     +
Sbjct: 267 AKGRIFGAGTVRVLNRQDAEVMTFASKGGGDVTFGIDEPATPEALGLLRDGGMHGGMPWI 326

Query: 268 LSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +              +K         V + ++         + G     NA+ A  LC A
Sbjct: 327 VLAEADNDDLPKPARRKKGDTTPAAPVPVRLKRLMPADALRIRGLHNATNAMAALALCRA 386

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IG+ ++ +L  L      P R E +                  +    L  +        
Sbjct: 387 IGLSASALLHGLRDYAGEPHRVELIAAFDDIEFFDDSKGTNVGATVAALSGLSKH----- 441

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           +V+   G  + Q   P+   +A     + ++  D P      +IRA +       +E   
Sbjct: 442 VVLIAGGEGKGQDFSPLAAPVAQYARAVVLIGRDAP------QIRAALADSGVELVEAPT 495

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
              A++ A+      D +++
Sbjct: 496 LEAAVQEAVARAQPGDAVLL 515


>gi|22537755|ref|NP_688606.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           2603V/R]
 gi|44888213|sp|Q8DY77|MURC_STRA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|22534646|gb|AAN00479.1|AE014265_8 UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           2603V/R]
          Length = 443

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V G  GK+S    +  + +    +SF IG  +   S   +                Y 
Sbjct: 106 LGVAGAHGKTSTTGLLAHVLKNITDTSFLIGDGTGRGSANAN----------------YF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY    +  FNA     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    IY +D    E+   A      +   G++       K +    N     +   
Sbjct: 199 ---QKGLFIYGEDPKLHEITSEAP-----IYYYGFEDSNDFIAKDITRTVNGSDFKVFYN 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++   F  P  G+  + NA         +GID ALV EHL+    V  RF     +   
Sbjct: 251 QEEIGQFHVPAYGKHNILNATAVIANLYIMGIDMALVAEHLKTFSGVKRRFTEKIIDDTV 310

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   L   R    S  I+ +F                 AL  AD   
Sbjct: 311 II--DDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALSQADSVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|325962947|ref|YP_004240853.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469034|gb|ADX72719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 473

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 119/355 (33%), Gaps = 38/355 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV S  +          +   I V  +    L+       G+   + LA+TGT+GK++  
Sbjct: 45  IVTSPGWRPDQALLAAAARAHIPVWGDVE--LAWRVRVREGRKTADWLAITGTNGKTTTV 102

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              + + + +GL +  +G   T                     +       V +      
Sbjct: 103 GLTESMLRAAGLKAIAVGNVGT--------------------PILDAIRDPVEYDVFAVE 142

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H  + +  +A    N+  DH+D+H +  +Y   K +++E     +   +  A+ 
Sbjct: 143 LSSFQLHWSESLSPVASVCLNIAEDHVDWHGSYDSYVADKAKVYER---TQKACLYNAEQ 199

Query: 251 AYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS------VEGKDFDFL 303
             ++ +++ A     CR +        I +  V       +  I        E      L
Sbjct: 200 IETERMVENADVVEGCRAIGFTTLTPAISMLGVVEGLLVDRAFIEERKDSAAELASMRDL 259

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L     V NAL AAGL  A G++   V + ++       R + V  ++    +    A
Sbjct: 260 GALAPRHMVANALAAAGLVRAYGVEPKAVRQGIQDYIPGDHRIQPVARHNGVLWVNDSKA 319

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
              ++    L   +       IV    G  +      ++ + +  L  + ++  D
Sbjct: 320 TNPHAASASLAAFKD------IVWIAGGLSKGVTYDDLVREHSHRLKAVVLLGAD 368


>gi|289209363|ref|YP_003461429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
 gi|288944994|gb|ADC72693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
          Length = 448

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 154/437 (35%), Gaps = 78/437 (17%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS    L+  +         ++  +   F ++            ++A+TG++GKS+V 
Sbjct: 71  LVVSPGVPLEHPAVEQARAAGAVITGDIDLFAAVA--------QAPVIAITGSNGKSTVT 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V +I   +G      G   T +                      L    V    +E S
Sbjct: 123 ALVGEILTAAGRKVAIGGNFGTPA--------------------LDLLDPVVEVYVLELS 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+  R + +K    +  N+  DH+D +    AY  AK R+    L + +  ++  DD
Sbjct: 163 SFQLE--RSEQLKPDGAAILNISPDHMDRYPDLAAYIQAKARI----LDRAARGVLNRDD 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--------------QVTISVE 296
            + +E+      AG RV+S G                 +              ++ +  +
Sbjct: 217 PWLREL---PLPAGLRVVSFGLDAPLAATDFGVNTGEAEPDLVRGEERLLSTARLRLRGQ 273

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               + L  L   +    +L A    +A           L     +P R +++   +   
Sbjct: 274 HNWANALAALALAWPWLESLQARSEALA----------ALADFAGLPHRSQWIARVAE-- 321

Query: 357 RIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDY + S   ++   L  +R  T G ++++   G  + Q   P+   +   +  + +
Sbjct: 322 ---VDYINDSKGTNVGATLAALRG-TPGPLVLI-AGGQGKGQDFSPLADYVPGKVRGVVL 376

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           + +D P       I   +   +P      +   A+  A       D ++++  G  ++ +
Sbjct: 377 LGEDAP------LIARALASVVP-VQRVDDMTAAVAQAAAWAQPGDTVLLS-PGCASLDM 428

Query: 475 VTNGEKKMSVDCDIIRE 491
             N + +      ++RE
Sbjct: 429 YENYQARGDDFARVVRE 445


>gi|254482444|ref|ZP_05095683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2148]
 gi|214037135|gb|EEB77803.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2148]
          Length = 455

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 129/410 (31%), Gaps = 41/410 (10%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  A+A+G      + A      +    ++ P  + +N                 + +LA
Sbjct: 69  VGNALARG------NPAVEYMLNAGLNYTSGPQWLAENVLA-------------GKWVLA 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
            +GT GK++ +S +  I + +G++   +     + +    +  T  +  ++ +A  Y ++
Sbjct: 110 ASGTHGKTTTSSMLAWILEYAGMAPGFL--IGGVPADFGLSARTGSTDFFVVEADEYDTA 167

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                                  +       NL  DH D      A       L   +  
Sbjct: 168 FFDKRSKFVHY------------RPRTLVINNLEFDHADIFPDIAAIQRQFHHLVRTVPS 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                   A  +  + + +   +  C     G      H       ++     +SV G D
Sbjct: 216 DGKIVYPRATASIDETLAQGCWSEMCATSIAG----AGHWNAELIENDGSVFEVSVGGGD 271

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                +   G   V NAL A      +G+   +  E L +   V  R E +G  + G  +
Sbjct: 272 PVLVRWTHCGLHNVENALAAMAAAHHVGVLPRVSAEALAEFRGVKRRLELLGKVA-GVAV 330

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y D+AH   ++   L+ +R    G  ++                 ++A    D   V   
Sbjct: 331 YDDFAHHPTAIATTLQGLRARGGGGRLIALIEPRSNTMRMGEHRARLAESTRDADRVYWF 390

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P   D      +++          +  E +   I  +   D +V+   G
Sbjct: 391 QPEGMDWS--LQDVVDKSSVATLASDIDELVAEVISEVQTGDQVVIMSNG 438


>gi|46203167|ref|ZP_00051951.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 341

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 94/287 (32%), Gaps = 35/287 (12%)

Query: 67  GAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           G  A+V++    L      ++  +     I ++ +   +    A+          +A+TG
Sbjct: 77  GFSALVLAPGVPLTHPEPHWTVPLARAAGIAIIGDIEIYCRERAALA---PEAPFVAITG 133

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  +    + + +G      G   T                     LS       
Sbjct: 134 TNGKSTTTALTAHLLRHAGRDVQMGGNIGT-------------------AILSLQPPAPN 174

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  +D      +    G   NL  DH+D H T + Y   K RL         
Sbjct: 175 RVHVIELSSFQIDL--TPSLAPSIGILLNLTPDHLDRHGTMENYAAIKERLIAG----AE 228

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DDAY   + +R      R+   G+      +             +  +      
Sbjct: 229 LAVVGVDDAYCAAIAERRTGERVRIHVEGHGAAAGDVVCSAGTVRGADGAVIAQ---VSG 285

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  L G+  + NA  A      +G+ +  +   L+    +  R E +
Sbjct: 286 IASLLGDHNLQNAAAAVAAARRLGLTADEIAAGLQSFPGLAHRMEPL 332


>gi|323480232|gb|ADX79671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis 62]
          Length = 456

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +   ++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTADDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|221065159|ref|ZP_03541264.1| UDP-N-acetylmuramate [Comamonas testosteroni KF-1]
 gi|220710182|gb|EED65550.1| UDP-N-acetylmuramate [Comamonas testosteroni KF-1]
          Length = 487

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/383 (18%), Positives = 114/383 (29%), Gaps = 42/383 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--------GPTSTIS 154
              A  +   H  ++LAV GT GK++  S +  + + +GL    +        G ++ + 
Sbjct: 116 QWLAEHVL--HGRHVLAVAGTHGKTTTTSMLTWVLECAGLQPGFLVGGVPLDFGVSARLG 173

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNL 212
           +  +      P           +  Q V  +  +         R   +  +       NL
Sbjct: 174 AVRRPVTGPGP-----------VGDQPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNL 222

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH D      A       L    +P     +    +     V+  A      V S G 
Sbjct: 223 EFDHADIFDDLAAIERQFHHLV-RTVPSTGRVVSNGLEESLSRVL--AQGCWSEVRSFGA 279

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                               +    K     + L G     NAL A      +G+ + L 
Sbjct: 280 TVSDFSADG----DPGDFAVLQRGQKVAQLRWSLTGVHNQLNALAAIAAADHLGVSAELA 335

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVFGC 390
            E L +   V  R E  GT   G  +Y D+AH   ++   L  +R       RI+ VF  
Sbjct: 336 CEALSRFQNVKRRMELRGT-VNGIDVYDDFAHHPTAIRTTLDGLRRKLGAQARILAVFEP 394

Query: 391 G-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
                  G        +L+ AD+      +    D +     +     G  ++      I
Sbjct: 395 RSNTMKLGTMKSQLPWSLESADLVFC---HTAGLDWDA-AEALESMGVGPSQRAQVAGDI 450

Query: 450 RTAIEM----LNKQDVLVVAGKG 468
            T I          D +V    G
Sbjct: 451 ETLIAQITAVARPGDHIVCMSNG 473


>gi|298490446|ref|YP_003720623.1| cyanophycin synthetase ['Nostoc azollae' 0708]
 gi|298232364|gb|ADI63500.1| cyanophycin synthetase ['Nostoc azollae' 0708]
          Length = 900

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 126/358 (35%), Gaps = 30/358 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I ++   +   +G T+T  ++  D  +          A   L    V    +E++ 
Sbjct: 503 LLAHIYRQ---TKKVVGYTTTDGTYIGDYLVEAGDNTGPQSAHVILQDPTVEVAVLESAR 559

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            G+ +  L       G   N+  DH+      T +   N K  + E + P +  A++ AD
Sbjct: 560 GGILRSGLGFESANVGVVLNVAADHLGIGDIDTIEQLANLKSVVAEAVFP-DGYAVLNAD 618

Query: 250 DAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D     + ++   N     ++        H++K       +   +S+   D+        
Sbjct: 619 DHRVAAMSEKTKANIAYFTMNPDSDLVRKHIQKGGVAAVYENGYLSIVKGDWTHRIERAE 678

Query: 309 E----------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
                      F + NAL A+       +    +   L          PGR         
Sbjct: 679 NIPLTMGGKAPFMIANALAASLAAFVQNVTIEQIRPGLRTFRASVSQTPGRMNLFNLGKY 738

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DYAH   S E +   +R  T+G+ I V G  GDR       +GK++ D+ D  +
Sbjct: 739 HALV--DYAHNPASYEALGSFVRNWTTGQRIGVIGGPGDRRDEDFVTLGKLSADIFDYIL 796

Query: 415 V-TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           V  DD+ R          II GI        F    +  +AI  A++M     ++V+ 
Sbjct: 797 VKEDDDTRGRLRGSASDLIIQGITQVKPNSRFESILDETQAINKALDMAPDGSLVVIL 854


>gi|86137685|ref|ZP_01056262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           MED193]
 gi|85826020|gb|EAQ46218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           MED193]
          Length = 465

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 112/329 (34%), Gaps = 35/329 (10%)

Query: 66  QGA----EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPE 115
           QGA     A+V S      Y   +          + V ++   F +   ++ +     P 
Sbjct: 61  QGAFDDIAALVTSPGIPHLYPQPNPVIRAALEVGVPVDNDIGLFFASLPAQGWDMLDQPP 120

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG++GKS+  + +  I +  G  S   G                         L 
Sbjct: 121 KVVAITGSNGKSTTVALLHHILESVGRDSQMAGNIG-------------------RGVLD 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    V +E SS+  +  R   +       TNL  DH+D H     YF AK RLF 
Sbjct: 162 IDPPGEAGVVVLELSSYQTELAR--ALTPDVAILTNLSPDHLDRHAGLGGYFAAKRRLFA 219

Query: 236 ELLPKESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQV 291
           E  P  +   +  D+    + ++ + A +     ++ G +  G    +       ++ + 
Sbjct: 220 EGGPDRAIIGVDEDEGLFLAGQMSQAASDDRVIRVASGRKLTGPGWQVFARKGFLSEMRK 279

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              V   D   +  LPG     NA  A      +G+   ++   L     +P R + V  
Sbjct: 280 GRQVASIDLRQMTGLPGAHNHQNACAAYAAARVLGLAPRVIEAALATYPGLPHRSQTVAE 339

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            +    +    A   +S    L   + I 
Sbjct: 340 VAGVRYVNDSKATNLDSAIKALSAFKNIR 368


>gi|320450522|ref|YP_004202618.1| UDP-N-acetylmuramate--alanine ligase [Thermus scotoductus SA-01]
 gi|320150691|gb|ADW22069.1| UDP-N-acetylmuramate--alanine ligase [Thermus scotoductus SA-01]
          Length = 446

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 106/286 (37%), Gaps = 28/286 (9%)

Query: 202 IKLIAGSFTNLGRDHI--------DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +++     TNL  DHI        +YH + +    A        L +    ++   D   
Sbjct: 163 VEVAVAVATNLEADHIAPAGQRAPNYHASLEELEKA----MRGFLSRAKTVVVPTFDP-- 216

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQV 312
             +++ +     ++     +G  +  ++        +  +  +G+   +    +PG   V
Sbjct: 217 -RLLRLSQGLPRKLFG---EGGDLWAEETELGPTGSRFQLVYQGRTLGEARLQVPGAHNV 272

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA   ++ G++   +LE L +   V  RF+ +G   RG  +  DYAH    ++  
Sbjct: 273 QNALAAALAALSFGVEPKAILEGLARFPGVGRRFQKIG-EVRGAWVVDDYAHHPTEVKAT 331

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKI 428
           L   + +   R+ V+F         +       AL  A   +V       E     PE +
Sbjct: 332 LATAKLL-GRRVRVLFQPHRLLRTQELWEGFAEALASAHEVVVLPVYTAGEKAGISPEAL 390

Query: 429 ---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               AE +  +       ++ EA+  A      +D+ +  G G  T
Sbjct: 391 SRRIAERLLALGKPARFLDKEEALAYARASAAPEDLWLTLGAGDVT 436


>gi|119505122|ref|ZP_01627198.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
 gi|119459104|gb|EAW40203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
          Length = 453

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 140/399 (35%), Gaps = 58/399 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS   +L+        N  + V+ +   F++             ++ +TG++GKS+V 
Sbjct: 76  LIVSPGVALEHPLVQFALNNKVRVMGDIDLFVAAA--------SAPVIGITGSNGKSTVT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V  +    G      G   T +                      L  Q V    +E S
Sbjct: 128 AMVASMLSACGKRVAVGGNFGTPA--------------------LDLLDQAVDFYVLELS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAII 246
           S  L+  R   +KL   +  N+  DH+D H +   Y +AK ++F+     +  +     +
Sbjct: 168 SFQLE--RAQPLKLAVATVLNVSADHLDRHGSMPRYHHAKHKIFQGAHAVVANRADSLTL 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D  +++V+ R  +       V        L  V  +         V          L
Sbjct: 226 PLLDGGTRQVLWRPTDPDLDEFGV------RQLDGVPYVCCGFTPLFPVS------ELKL 273

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + N L A  L +A+ +    ++  L+    +P R E V  ++    I        
Sbjct: 274 KGMHNLNNVLAALALGVALDLPLERLIAGLKDFSGLPHRCELVLDDAGVSWINDSKGTNV 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L     + +   +V+   G  + Q    ++ ++        ++T      E   
Sbjct: 334 GATRAALA---GLGAQENVVLIAGGVGKGQDFTALLPEV--RNHCRRVLTL----GESAR 384

Query: 427 KIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
           +I  E+  G    +++ +   +A+  A  +    DV+++
Sbjct: 385 EI--ELALGAHTPVQRVDSLEDAVAKAAALAQAGDVVLL 421


>gi|39998162|ref|NP_954113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
 gi|62900554|sp|Q748D4|MURD_GEOSL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39985108|gb|AAR36463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
          Length = 452

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/417 (18%), Positives = 140/417 (33%), Gaps = 64/417 (15%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLY 110
           + D   F        AE +VVS     +     A  R+   ++            ASR  
Sbjct: 60  RHDEADFAA------AETVVVSPGVPQESPYLQAARRAGREVITE-------IELASRFI 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++A+TGT+GK++  +   ++    G  +F  G                      
Sbjct: 107 ---TAPLVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGN------------------ 145

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L  L   G     V           +   +       N+  DH+D + T Q Y +AK
Sbjct: 146 --PLIELVETGAAVDRVVVEISSFQLEWIRSFRPTVAVLLNITEDHLDRYATYQEYIDAK 203

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            R+F+        A++  DD     +  R   A     R   +G +G F     +   H 
Sbjct: 204 ARIFKNQT-ASDWAVLNVDDPIVAGLAGRTCAAVFPMSRQRELG-EGIFYRDGAIIFRHA 261

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +Q     +       F + G   + N + +    + +G D+   L  +E    +P R E
Sbjct: 262 GRQERFPTD------RFRITGVHNIENIMASLAAALLLGCDADRALACVEAFGGLPHRME 315

Query: 348 FVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            V     G R + D  A    S+E  L +   IT      +   G D+     P+ G +A
Sbjct: 316 LV-RELNGVRYFEDSKATNVGSVEKALASFNDIT------LIAGGKDKGGSYAPLAGLVA 368

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             +  + ++       E  +++  E+ H +          +A+  A  +     V++
Sbjct: 369 ERVRHMILI------GEAKDRMARELGH-LTDTRMAVTLEDAVELAASLTQPGGVVL 418


>gi|222474899|ref|YP_002563314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Florida]
 gi|255002871|ref|ZP_05277835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Puerto Rico]
 gi|222419035|gb|ACM49058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Anaplasma
           marginale str. Florida]
          Length = 454

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 117/351 (33%), Gaps = 54/351 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  ++ VTGT+GKS+    +  I  R+G+ S   G                    
Sbjct: 105 FCRSRPARLIGVTGTNGKSTTVELIGWILNRAGIDSETGGNIG----------------- 147

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                LS    QG     +E SS+ L+  R  G+ L  G   N+  +H+D +     Y  
Sbjct: 148 --KGVLSL--PQGKAAYILELSSYQLELMR--GVNLDVGVILNITPNHLDVYSNMADYIA 201

Query: 229 AKMRL--FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           AK R+  F  LL           D+ +  + +          +VG   +F   KK+    
Sbjct: 202 AKGRILEFSNLLVA------NCGDSNTAHLCE----------NVGNMVEFSCGKKLARGV 245

Query: 287 NKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +     I  +G+  +     +       N   +  +  ++G+   +++  + +   +  R
Sbjct: 246 SVLDGRIYFQGRVAEIGGLKIDSASNAENIAASYAVAKSLGVSDEVIMASIREFPGLRHR 305

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + V   +    +    A T+ S+   L +   +           G  +D G  PI+   
Sbjct: 306 NQVVAEVANVTFVNDSKATTAASVAKALVSRENVYW------IAGGKSKDGGIEPILSLY 359

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           A  +    +V       E  +     +       +   +   A++ A    
Sbjct: 360 ANRIRKAFLV------GEAADMFAVSLQRARVEHVMCYDVYNAVQIAFAEA 404


>gi|332184313|gb|AEE26567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
           novicida 3523]
          Length = 417

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/392 (17%), Positives = 144/392 (36%), Gaps = 65/392 (16%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS    L      I +     +V +   F                +AVTG++GKS+V + 
Sbjct: 60  VSPGIPLNKSPYRILTKFKDKIVSDIDIFYQ-----YIKDTKAKTIAVTGSNGKSTVVTM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              + +  G  S  +G   T                    AL+ +  +   +  VE SS 
Sbjct: 115 TDFVLKDLGYKSILVGNIGT-------------------PALNKIGEK-FDYCIVEVSSF 154

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +D    + ++   G   N+  DH+D +Q  + Y  +K+ L +           +++D +
Sbjct: 155 QIDLF--NCVRFDLGCVINVSPDHLDRYQNFEEYKQSKLNLAK-----------FSNDFF 201

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +V    HN G +     Y G++  ++      + + + I+           L GE  +
Sbjct: 202 VYDV----HNNGIK-----YAGEYQIIRGAIYRGSIKLLDIT--------ETNLYGEHNL 244

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N +V   +   +G+D    ++ ++K   +  R + V      G  Y++ +  +N +   
Sbjct: 245 ENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKIV--KKVNGITYINDSKGTN-VGAT 301

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  + +IT+ + I++   G  +  G   +M K          +        D E I + I
Sbjct: 302 IAALNSITNSKNIILLLGGVAKG-GDFSLMIKSLDKYVKYVYL-----YGADKEYIESYI 355

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +    N  +A   A +     +++++
Sbjct: 356 KSYCK-YQLCNNMKQAFELASQKAEANEIILL 386


>gi|87303830|ref|ZP_01086543.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
 gi|87281659|gb|EAQ73653.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
          Length = 401

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 120/422 (28%), Gaps = 64/422 (15%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +V+S+A      +          I    +    L            +  +AV G+ GK+
Sbjct: 10  VVVISTAIPDTNPELQNARAHQLAIWHRSDLLAALID---------QQASIAVAGSHGKT 60

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + ++ +  +   +G       PT+ I            S            S G      
Sbjct: 61  TTSTLITTLLIEAGED-----PTAVIGGVVPCLGSNGHSGQGRLLVAEADESDGS----- 110

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      L       G  TNL  DH D+++      +   R            I  
Sbjct: 111 -----------LVKFSPSLGVITNLELDHTDHYKGLDDLISTLQRFGRGC----ERLIAN 155

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            DD     +++          +   +        +    ++        G    DF  P+
Sbjct: 156 YDDP----ILQEHFEPTAWWSNQQSENIAFAALPLQLDGDRCTARFYENGSAVGDFTLPM 211

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NA  A   C   G+    +++ L +L     RF+  GT   G  I  DYAH  
Sbjct: 212 AGLHNLSNATAALAACRMEGVPFEALVKGLAQLQAPGRRFDLRGTWE-GRHIVDDYAHHP 270

Query: 367 NSLEMILKNIRTIT----------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + +   L   + +             R++ VF         +       AL   D  ++ 
Sbjct: 271 SEVRATLTMAQLMVSSGRSPLPSSPQRLVAVFQPHRFSRTQQFFEAFAEALQNCDALLLA 330

Query: 417 DDNPRSED--PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML--------NKQDVLVVAG 466
                 E   P      +   I     + +   A+   ++ L           D+++  G
Sbjct: 331 PVYAAGEQTIPGVCSNALAQRIRSL--RPDLEIAVADDLDQLTDLVKQRSRPDDLVLAMG 388

Query: 467 KG 468
            G
Sbjct: 389 AG 390


>gi|325293467|ref|YP_004279331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
 gi|325061320|gb|ADY65011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
          Length = 469

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 103/287 (35%), Gaps = 46/287 (16%)

Query: 91  PILVVDNTRKFLSLF--------ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           P   VD  R                R         +A+TGT+GKS+  + +  I + SG 
Sbjct: 82  PHWSVDLARAAGVEIIGDIELFIRERRAHAPDCPFIAITGTNGKSTTTALIAHILKASGR 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +   G   T                     LS    +      VE SS+ +D      I
Sbjct: 142 DTQLGGNIGT-------------------AVLSLDPPKAQRFYVVECSSYQIDLA--PTI 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              AG   NL  DH+D H T Q Y + K RL          AI+  DD+YS  +  R   
Sbjct: 181 NPTAGILLNLTPDHLDRHGTMQHYADVKERLVAG----SGTAIVGVDDSYSTLIADRIER 236

Query: 263 AGCRVLSVGYQGK------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           AG +V  +  +            + + A   K  + + ++G     +  L G     NA 
Sbjct: 237 AGVKVERISKRNVVSEGLYAEGSRILRAHGGKSSLLVDLDG-----IQTLRGSHNAQNAA 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            A   C+A+G+    V   L+    +  R + VG   RG   +V+ +
Sbjct: 292 AAIAACLAVGVSEEDVRAGLKSFPGLKHRMQPVG--RRGNVTFVNDS 336


>gi|302671221|ref|YP_003831181.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Butyrivibrio
           proteoclasticus B316]
 gi|302395694|gb|ADL34599.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Butyrivibrio
           proteoclasticus B316]
          Length = 457

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 107/285 (37%), Gaps = 32/285 (11%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D       +  N+  DH++ H T + Y   K  +      KE   ++ 
Sbjct: 168 EISSFQLEA--VDNFHANVSAILNITPDHLNRHHTMECYAQMKENI-THNQTKEDTCVLN 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            D+ Y+++   R      +V+    + K           + + + ++  G     +    
Sbjct: 225 YDNEYTRDFGAR---CPAKVVFFSSKEKLED----GFYLDGEDIYMATAGNAMKIMNIHD 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V N + A  + +A+ +  A +L  +     V  R EFV T        VDY 
Sbjct: 278 MNLVGTCNVENVMAAIAMSLAMDVPLATILSVIRNFKAVEHRIEFVATKRG-----VDYY 332

Query: 364 HTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           + S   + +  ++ ++ +    I++  G G D+       +      +  + ++      
Sbjct: 333 NDSKGTNPDAAIQGVKAMCKPTILI--GGGYDKGNDYDEWIESFGDTIKLLVLI------ 384

Query: 422 SEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  +KI    +  HG   ++ K    EA+    E   K D +++
Sbjct: 385 GQTRQKIAECCD-KHGFSNYVFKDTYEEALEFCTESAQKGDAVLL 428


>gi|145641283|ref|ZP_01796863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|145274120|gb|EDK13986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.4-21]
          Length = 99

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 47/92 (51%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           +  S +  +     N P++      + LS  A
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLA 95


>gi|312952735|ref|ZP_07771597.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0102]
 gi|310629251|gb|EFQ12534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0102]
 gi|315153069|gb|EFT97085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0031]
          Length = 456

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A     K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFNYSEKDDTILL 424


>gi|301381930|ref|ZP_07230348.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato Max13]
 gi|302058602|ref|ZP_07250143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato K40]
 gi|302130571|ref|ZP_07256561.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 449

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 125/404 (30%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + S     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPSVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I      +     +P ++ +A  Y S+           
Sbjct: 119 SMLAWVLEHAGMSPGFL--IGGIPQNFAVSARLGGTPFFVVEADEYDSAFFDKRSKFVHY 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I    +
Sbjct: 177 ------------RPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPTTE 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
                V+K        V + G  G++   +      +  +  +  EG+      + + G 
Sbjct: 224 PALSRVIKM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGELQGAVEWGMTGL 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+   L ++ L     V  R E V  + RG  IY D+AH   ++
Sbjct: 279 HNVANALATLAAARHVGVVPLLGVQALSAFKSVKRRMEKV-ADVRGITIYDDFAHHPTAI 337

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDPE- 426
              L  +R       I+            G        ++  AD  +          P  
Sbjct: 338 ATTLDGLRKKVGDAPIIAVIEPRSNSMKLGAHRDGLPESVQQADQVV------WYAPPNL 391

Query: 427 --KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              + A +  G    +   +    I            +V+   G
Sbjct: 392 GWDLAATVAAGTVPALVCDSLEAIIAQVKSQAQPGTHIVIMSNG 435


>gi|148265987|ref|YP_001232693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
 gi|189082910|sp|A5G8K2|MURD_GEOUR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146399487|gb|ABQ28120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
          Length = 453

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 108/293 (36%), Gaps = 23/293 (7%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  L + G     V           +   +       N+  DH+D + T Q Y +AK+R+
Sbjct: 147 LIELVTSGEAVDRVVVELSSFQLEGIIDFRPQVAVLLNITEDHLDRYATYQEYIDAKLRI 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           FE     +  A++  DD     V   A     RV+    + +          +    +  
Sbjct: 207 FENQTSAD-YAVLNMDDPL---VAAYAGKMKARVVPTSQRQEL----AQGIFYRNGSIVY 258

Query: 294 SVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             EG++  F    F L G   + N + A    + +G D+   L  LE    +P R EFV 
Sbjct: 259 RWEGREELFATASFRLKGVHNIDNIMAALASTLLMGCDAGQALAALEAFAGLPHRMEFV- 317

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G   Y D   T+  +  ++K++ +  SG  I +   G D+     P+ G +   + 
Sbjct: 318 REVNGVAWYEDSKGTN--VGSVVKSLESFDSG--ITLIAGGKDKGGEYTPLAGLVKERVG 373

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            + ++       E  E++   +   +          +A+  A  + +   V++
Sbjct: 374 HLILI------GEAKERMCNALGS-LTDTHLADTLEDAVALAHRLTSPGGVVL 419


>gi|34580522|ref|ZP_00142002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           sibirica 246]
 gi|28261907|gb|EAA25411.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           sibirica 246]
          Length = 500

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 116/361 (32%), Gaps = 82/361 (22%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I +  +     +              +A+TGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVNIAKSFNIPITSDIDLLFAK-------SKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G                     ++   +  S  G     +E S
Sbjct: 120 ALISHILNSSGLDYPVAGNIG------------------VSALQAKASKDG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+  + +ES A+I  D+
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMTCYIAAKSKIFDR-MDQESYAVINIDN 215

Query: 251 AYSKEV-MKRAHNAGCRVLSVG---------------YQGKFIHLKKVCAIHNKQQVTIS 294
            Y +EV +K       +++                      F         HN +     
Sbjct: 216 DYCREVFIKLQQEQRIKLIPFSVAQILENGISVVDDKISANFFDDISFELQHNSESFRQD 275

Query: 295 -VEGKDFDFLFPLPGE---------------------------FQVYNALVAAGLCIAIG 326
             +G+  +       +                               N   +  +   IG
Sbjct: 276 EFQGEPAEPECIKIRKHRQDLQNSLVSSFMHYAVPFNKNLQGVHNCENIAASYAVAKIIG 335

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITS 381
           ++   +LE +     +P R +++G+ +     + + +  +N++  +     L NI  +  
Sbjct: 336 VEPKKILESISSFQSLPHRMQYIGSINNIS--FYNDSKATNAISAVQSIKALDNIYWLAG 393

Query: 382 G 382
           G
Sbjct: 394 G 394


>gi|76801390|ref|YP_326398.1| folylpolyglutamate synthase / dihydropteroate synthase
           [Natronomonas pharaonis DSM 2160]
 gi|76557255|emb|CAI48830.1| folylpolyglutamate synthase / dihydropteroate synthase
           [Natronomonas pharaonis DSM 2160]
          Length = 812

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 139/406 (34%), Gaps = 54/406 (13%)

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------ 148
           V+ TR+ L             +I+ V G++GK S A  V+ + + +G             
Sbjct: 22  VEPTRRLLEHVGVADTD---IDIVQVGGSNGKGSTARMVESVLREAGYDVGLYTSPHLDD 78

Query: 149 ----------------PTSTISSFAQDNRLTTPS--PIYLAKALSYLS-----SQGVTHV 185
                               +       R   P   P    +A++ L+       GV   
Sbjct: 79  LRERVRVDGRPVSKQAVCDYVEDIKPYVRTEMPDGAPPTFFEAMTGLAARTFERAGVDIA 138

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            +E    G +          A + TN+  +H D    T       K  +           
Sbjct: 139 VLEVGI-GGEHDATSAFAPDAAAVTNVTFEHSDLLGDTIAEIARDKAAI------GADAP 191

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ A +  +  V++    +  RV +       + ++       +Q V +  +    +   
Sbjct: 192 LVTAAEGEALSVIEDIAASTERVGT--DASADVAVRDRGRDDIEQAVVLDGDDWHVETAL 249

Query: 305 PLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           PL G  Q  NA VAA L   +G + +A +   L   H   GRFE +   +R   + +D A
Sbjct: 250 PLLGAHQARNAGVAAALARTVGNVSTADIERGLRNAHWP-GRFEVM---NREPLVVLDGA 305

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRS 422
           H   S   +   + T     + +VFG   D+D          AL  A +A     D  R+
Sbjct: 306 HNPGSCAGVAATLSTFAYDDLHLVFGAMCDKDHRGMVE----ALPDATVAYTCRPDIQRA 361

Query: 423 EDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E  + + A  E + G       G   +A+  A+      D ++V G
Sbjct: 362 ETADSLAAVFEAVGGAAAVEPVGAVEDAVERALAAAGSDDAVIVCG 407


>gi|313205089|ref|YP_004043746.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
 gi|312444405|gb|ADQ80761.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
          Length = 486

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 127/414 (30%), Gaps = 63/414 (15%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S+A     F         I ++  + + L+L A        +  +AV GTSGKS+ +
Sbjct: 103 VVASTAIEDTVFEVQKAKELNIPILRRS-EVLALIAE------SKKTIAVGGTSGKSTTS 155

Query: 131 SFVQQICQRSGLSSFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +  I Q +GL    I   G TS I      N         + +A              
Sbjct: 156 AMIFDIMQYAGLEPSIISGAGLTSIIREGKIGNAKVGKGEWLVIEA-------------- 201

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII- 246
           + S   + Q+         G   N+ +DH +  +  +        +F           I 
Sbjct: 202 DESDGSIVQY-----HPEIGLLLNIDKDHQEIDELME--------IFGTFRDNTKEIFIT 248

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              +  + ++   A N      S G             + N   +  S+ G         
Sbjct: 249 NRSNKLAAKLSVAAANDFATAASEGA-----GYTGTDFVQNGLHIQFSINGTTIKMNTV- 302

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NAL A  +   +G+      E L +   +  R + +G    G  +  DYAH  
Sbjct: 303 -GAHNMENALAALAVVHRLGVSFDTAAEALTQYEGIYRRHQIIGEK-HGVLLIDDYAHNP 360

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVTDDNPRS 422
                 +   + +    +I  F   G +                L   D   +++     
Sbjct: 361 AKCAASIAACQPVAPK-LIAWFQPHGYKPTRFLRDDFVHDIAAVLRPQDEIWMSEIFYAG 419

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNR---IEAIRTAIEMLNKQDVLVVAGK 467
                      +  ++           NR    EAI+     L  Q VL++ G 
Sbjct: 420 GSAVKDISANDLIEDLKKLGKNAFFVENRNNLTEAIK---PHLEAQTVLLLMGA 470


>gi|266625297|ref|ZP_06118232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
 gi|288862800|gb|EFC95098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
          Length = 111

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  ++ VS DSR ++   +FV +VG K D H FI QA   GA A   S    ++D    
Sbjct: 22  PDTPLDHVSIDSRTMKGNDLFVPLVGEKVDAHRFIGQAFDNGAAATFTSEHDVMED---- 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              N P + V +T++ L    +    +    ++ +TG
Sbjct: 78  ---NRPWIRVSDTKRALQALGAWYRRRLKLPLVGITG 111


>gi|254391593|ref|ZP_05006792.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294812134|ref|ZP_06770777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440710|ref|ZP_08215444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705279|gb|EDY51091.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324733|gb|EFG06376.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 492

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 134/376 (35%), Gaps = 30/376 (7%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I + +GL +  +G    +S         
Sbjct: 102 ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGLRTAAVGNIG-VSLLDAVLGEN 160

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASS-HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T                      V A        H    ++  + +  NL  DH+D+H +
Sbjct: 161 TGENAGQDAGRDGGEGADANAYDVLAVELSSYQLHWAPSLRAHSAAVLNLAPDHLDWHGS 220

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKK 281
            +AY   K R++E         +  A D  ++++++ A    GCR +             
Sbjct: 221 MEAYAADKGRIYEGNTV---ACVYNAADPATEDLVREADVEEGCRAIGFTLGTPGPSQLG 277

Query: 282 VCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           V       +  ++   +    L        P    + NAL AA L  A G+ +  V E L
Sbjct: 278 VVDGILVDRAFVANRHQQAQELAEVADIDPPAPHNIANALAAAALARAFGVPATAVREGL 337

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 P R E V   +  G  YVD +  +N+         ++ +   IV    G  +  
Sbjct: 338 RSFRPDPHRIEKVADVA--GVAYVDDSKATNT----HAAAASLAAYEPIVWIAGGLAKGA 391

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIE------AI 449
               ++G+ A  L  + ++  D         IR  +    P   +   +R +      A+
Sbjct: 392 VFDELVGQSADRLRAVVLMGADR------ALIREALARHAPEVPVVDLDRTDTGAMAAAV 445

Query: 450 RTAIEMLNKQDVLVVA 465
           R A  +    D +++A
Sbjct: 446 REAARLARPGDTVLLA 461


>gi|220929148|ref|YP_002506057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulolyticum H10]
 gi|254766044|sp|B8I2T4|MURD_CLOCE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219999476|gb|ACL76077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulolyticum H10]
          Length = 465

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 126/389 (32%), Gaps = 42/389 (10%)

Query: 83  SATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           +  +R + P LV  V N  +  S          P  + AVTG+ GK++  + + +     
Sbjct: 84  TPGMRPDLPELVEAVANGAELTSEM-EVFLKLCPAQVFAVTGSDGKTTTTTLIYKTLSEE 142

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G   +  G   T      D+   T   I    +   ++ +                    
Sbjct: 143 GFKCWLGGNIGTPLLSKIDDVAETDKVILELSSFQLMTIKDC------------------ 184

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  +H+D H++ Q Y +AK  +F      +    +  D+  +K     A
Sbjct: 185 ---PSVAVITNISPNHLDVHKSLQEYIDAKKNIFINQNENDKLV-LNFDNEITKSFNYEA 240

Query: 261 HNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                    +       ++      +  +  +T  +EG        +PG   + N + A 
Sbjct: 241 RGEYVYFSRLNNINEGVVYQNGRIIVKKENSITEIIEGD----KIKIPGVHNIENYMAAT 296

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-SLEMILKNIRT 378
              I   +    +       + V  R E V   +        Y  + + S    +  ++T
Sbjct: 297 AATIDY-VKPETIARIASSFNGVEHRIELVRELNG----VKFYNSSIDSSPSRTIAALKT 351

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK---IRAEIIHG 435
                 +++   G D+      +   I   +  + ++     R E+  K    + ++ + 
Sbjct: 352 FKDK--VILIAGGKDKGIPYDSMGEIITEKVKCLLLIGATASRIEEAYKNYLQQRDLEND 409

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   I      E ++ A     + D +++
Sbjct: 410 IK-IIHCDTYQEVVQKAHAEAEQGDCIIL 437


>gi|332530687|ref|ZP_08406618.1| UDP-N-acetylmuramate [Hylemonella gracilis ATCC 19624]
 gi|332039855|gb|EGI76250.1| UDP-N-acetylmuramate [Hylemonella gracilis ATCC 19624]
          Length = 480

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 108/369 (29%), Gaps = 30/369 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
              ++LAV GT GK++  S +  I + +GL    +  G        A+   ++       
Sbjct: 109 QGRHVLAVAGTHGKTTTTSMLAWILEHAGLQPGFLVGGVPLNFGISARLGGMSNRDQAGE 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                      +       ++    + +    +       NL  DH D      A     
Sbjct: 169 TGVPEQHRPLFIIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLAAIERQF 228

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P     +    +     V+ +         S G            A    Q 
Sbjct: 229 HHLV-RTVPASGRVVFNGLEESLARVLHQ--GCWSEQRSFGAASSDF-----QAQGEPQD 280

Query: 291 VTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   G       + + G     NAL A      +G+  A     L +   V  R E  
Sbjct: 281 FEVLRHGVSVAHVQWKVGGVHNQLNALAAIAAAEHVGVTPAQAALALREFQNVKRRMEIR 340

Query: 350 GTNSR---GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI- 405
           G  SR   G  +Y D+AH   ++   L  +R       I+              +  ++ 
Sbjct: 341 GVVSRDGGGITVYDDFAHHPTAIRTTLDGLRRQVGQARILAVFEPRSNTMKLGTMKAQLP 400

Query: 406 -ALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +L+ A++A      +  D   +  P   RA++   I   +            I      
Sbjct: 401 WSLEDANLAFCHTGGLGWDAREALAPMGTRAQVADSIDELVS---------QVIAAARPG 451

Query: 460 DVLVVAGKG 468
           D ++    G
Sbjct: 452 DHILCMSNG 460


>gi|114570630|ref|YP_757310.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Maricaulis
           maris MCS10]
 gi|114341092|gb|ABI66372.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maricaulis maris
           MCS10]
          Length = 474

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 107/310 (34%), Gaps = 32/310 (10%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+++S    L          +       V+ +   F    A     + P  ++ +TGT+
Sbjct: 67  AALILSPGIPLTHPKPHHMVELARAVEAPVIGDIELFAQALADLPEKRRP-KVIGITGTN 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  I + +G +    G                         L+    +  ++
Sbjct: 126 GKSTTTALIGHILRATGRNVVVGGNIG-------------------DAILAQSPPRPGSY 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ LD      +        N+  DHID H     YF AK RLFE   P    A
Sbjct: 167 YVLELSSYQLDLTHT--LACDVAVLLNVTPDHIDRHGDFDGYFRAKKRLFEMQKP-GGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFD 301
           ++  DD  +                +      +  + V A+ ++    +   S    D  
Sbjct: 224 VVGIDDNTTSAYYSALRRQRREEEVIPISAGRVFARGVYALGDRVYDALDCASHPIVDLA 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            +  LPG     NA  A     A+G+      + +     +P R E V T +  G  YV+
Sbjct: 284 KVPTLPGRHNAQNAAAALATVRALGVAGRAAADAITTFPGLPHRQERVATIN--GVTYVN 341

Query: 362 YAHTSNSLEM 371
            +  +N+   
Sbjct: 342 DSKATNAEAA 351


>gi|76787448|ref|YP_330233.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           A909]
 gi|76798460|ref|ZP_00780698.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           18RS21]
 gi|77408486|ref|ZP_00785224.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           COH1]
 gi|77411925|ref|ZP_00788256.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           CJB111]
 gi|109892745|sp|Q3JZS0|MURC_STRA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|76562505|gb|ABA45089.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           A909]
 gi|76586194|gb|EAO62714.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           18RS21]
 gi|77162022|gb|EAO73002.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           CJB111]
 gi|77172928|gb|EAO76059.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           COH1]
 gi|319745510|gb|EFV97812.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           ATCC 13813]
          Length = 443

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V G  GK+S    +  + +    +SF IG  +   S   +                Y 
Sbjct: 106 LGVAGAHGKTSTTGLLAHVLKNITDTSFLIGDGTGRGSANAN----------------YF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY    +  FNA     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    IY +D    E+   A      +   G++       K +    N     +   
Sbjct: 199 ---QKGLFIYGEDPKLHEITSEAP-----IYYYGFEDSNDFIAKDITRTVNGSDFKVFYN 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++   F  P  G+  + NA         +GID ALV EHL+    V  RF     +   
Sbjct: 251 QEEIGQFHVPAYGKHNILNATAVIANLYIMGIDMALVAEHLKTFSGVKRRFTEKIIDDTV 310

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   L   R    S  I+ +F                 AL  AD   
Sbjct: 311 II--DDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALSQADSVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|84490003|ref|YP_448235.1| hypothetical protein Msp_1211 [Methanosphaera stadtmanae DSM 3091]
 gi|84373322|gb|ABC57592.1| partially conserved hypothetical membrane-spanning protein
           [Methanosphaera stadtmanae DSM 3091]
          Length = 514

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 126/367 (34%), Gaps = 69/367 (18%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             PIL V +  +           KHP  ++ +TGT+GK++  + ++ I   +GL   +  
Sbjct: 98  GIPILTVKDILEI-------FEPKHP--VICITGTNGKTTTTTLLKHIAYHAGLKPCEHN 148

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD---QHRLDGIKLI 205
                 + A            L   L+           +E  + G+    +      K  
Sbjct: 149 LMGLQGNTA--------DIPPLQSRLN------GNINILETGTFGIKGSLEKLAKACKPD 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  TN+  DH+  + +   Y   K  L E  L +    +I  DD   + ++K   N   
Sbjct: 195 VGLITNITPDHLSENSSFLDYARVKGELVE--LLRNKTLVINNDDPTIESLLKEL-NYEG 251

Query: 266 RVLSVGYQ-------------------------------------GKFIHLKKVCAIHNK 288
            ++S G                                        K  +L       + 
Sbjct: 252 NLISFGLDTNSNKTTLKQCFCGKKVQIKEFCGGVGVYECNCGLKYTKPDYLACNINDKHN 311

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFE 347
           Q +  +   ++++F   + G   +YNA+ A  +    + I    + E ++    V GR E
Sbjct: 312 QFILKTPYNEEYEFKLGIYGIHNIYNAVGAIIIAHETLNISYETIKEAVKSFKGVGGRME 371

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +G  S   +I VDYAH    +  +LK ++    G I+ V     +        +   A 
Sbjct: 372 KIGI-SHNKQIMVDYAHNPAGITSVLKELKN-AYGTIVDVITTSSESGIDGDKEILDCAA 429

Query: 408 DLADIAI 414
           + A+  +
Sbjct: 430 EHANYIV 436


>gi|90580226|ref|ZP_01236033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           angustum S14]
 gi|90438528|gb|EAS63712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           angustum S14]
          Length = 446

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 138/400 (34%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L      + +   + ++ +   F             + ++A+TG++GKS
Sbjct: 69  ADLIVASPGIALATPELVLAAEAGVEIIGDIELFAREV--------DKPVVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G++    G                        AL  L+ Q   +  +
Sbjct: 121 TVTSLVGEMAKEAGINVGVGGNIG-------------------FAALDMLAQQHSLY-VL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      ++L A  + NL  DH+D +      Y  AKMR+F+        A+ 
Sbjct: 161 ELSSFQLE--TTTSLELTAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH----AKLAVF 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
             DD     +  +       + S G+  +   +  V          ++V G+    +   
Sbjct: 215 NRDD-----LATKPTQFSGAMTSFGFDDQDYGIVLVNGKEW-----LAVNGEAVMAVADI 264

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   V N L A  L  A GI        +++   +  R +    N  G R   D   
Sbjct: 265 ALVGRHNVANCLAALALADAAGIPRDAACRAMQRYTGLAHRCQL-AVNRHGVRWVNDSKA 323

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T+  L   L  +  +     + +   G  +      +   +A     +     D      
Sbjct: 324 TN--LASTLAALNGLQLEGKLHLLMGGDSKGAEFSELKPVLADLNVQLYSFGRD------ 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  ++   +   I      +A+      +   D++++
Sbjct: 376 -RHLFNDV---VDNAISVETMSDAMVCISRTVQSGDMVLL 411


>gi|77405818|ref|ZP_00782902.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           H36B]
 gi|77175605|gb|EAO78390.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae
           H36B]
          Length = 443

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V G  GK+S    +  + +    +SF IG  +   S   +                Y 
Sbjct: 106 LGVAGAHGKTSTTGLLAHVLKNITDTSFLIGDGTGRGSANAN----------------YF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY    +  FNA     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    IY +D    E+   A      +   G++       K +    N     +   
Sbjct: 199 ---QKGLFIYGEDPKLHEITSEAP-----IYYYGFEDSNDFIAKDITRTVNGSDFKVFYN 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++   F  P  G+  + NA         +GID ALV EHL+    V  RF     +   
Sbjct: 251 QEEIGQFHVPAYGKHNILNATAVIANLYIMGIDMALVAEHLKTFSGVKRRFTEKIIDDTV 310

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   L   R    S  I+ +F                 AL  AD   
Sbjct: 311 II--DDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAHALSQADSVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|269122825|ref|YP_003305402.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314151|gb|ACZ00525.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptobacillus
           moniliformis DSM 12112]
          Length = 457

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 121/332 (36%), Gaps = 46/332 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A     K    I+A TGT+GK++  +   ++ +++G +    G               
Sbjct: 80  DIAYEYMNK-DIQIIAFTGTNGKTTTCTKTYEMLKKAGFNVELGGNVG------------ 126

Query: 164 TPSPIYLAKALSYLSSQ--GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   ++ + +  +   + ++ +E SS+ L+ +    IK       NL  DH+  ++
Sbjct: 127 --------RSFAEIVKENKELDYIVLELSSYQLENN--PKIKPYISGIINLTPDHLGRYK 176

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH------NAGCRVLSVGYQGK 275
             + Y+  K  +F     K+   I+  DDA    +  +A       N     +S   +G 
Sbjct: 177 DVEDYYMTKFNIFSNQDKKDR-MIVNVDDATFLNLYNKAKELENYRNPKRVYISTNNKGS 235

Query: 276 FI------HLKKVCAIHNKQQVTIS-VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGI 327
                   ++ K  +     + ++S    K  D     L GE  + N L         G+
Sbjct: 236 IFVKNGQIYVMKDLSEMYNSKFSLSQSADKLIDVKDIALKGEHNLENMLFLIATAKICGV 295

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            + ++   L+++  +  R E     S    ++++ +  +N    +    + I S    V+
Sbjct: 296 PNKVIRNFLKEVKSIEHRMEDFFKKSN--TVFINDSKGTN----VASTKKAIASYENDVI 349

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             CGG+  +     +GK          +  +N
Sbjct: 350 LICGGEDKKVPLYELGKEIGKKIKFTYIYGEN 381


>gi|227485084|ref|ZP_03915400.1| possible tetrahydrofolate synthase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236917|gb|EEI86932.1| possible tetrahydrofolate synthase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 424

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 145/409 (35%), Gaps = 62/409 (15%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-------SGLSSFQIGP 149
           N RK +    +    +     + V GT+GK S A  +  +  +       +     +I  
Sbjct: 25  NIRKVME---AFDNPQDKIKTIHVAGTNGKGSTAKMLANVLSKKVKCGIFTSPYMVRINE 81

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             +I+     N         +         +G      E  +  +        K+     
Sbjct: 82  EISINGVDISNEDFCNLMDRIRPVAEQCDEEGYHITYFEFLT-AMVYLYFYEQKVDVAVI 140

Query: 210 ----------TN------------LGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
                     TN            +  DH++    T +     K      ++ K  P  +
Sbjct: 141 EVGLGGSLDSTNIIKSPLASVICSISMDHMNVLGSTIEEIAANKA----GIIKKNRPVFV 196

Query: 247 YA--DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           Y    +   + + +++     ++ +          K    I +      + + K + D  
Sbjct: 197 YPQTSEEAFRVIKEKSIAEQAQLFTFK--------KDEINIKDFSDFGNTFDFKSYKDLQ 248

Query: 304 FPLPGEFQVYNALVAAGLCIA----IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             L GE Q+YNA +A  +         +    + E + + +   GR + V TN R   + 
Sbjct: 249 TSLRGEHQIYNASLALMVLDYFKKDFNLSEDDIKEGIRETYNP-GRVDLVSTNPR---VL 304

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--D 417
           +D +H   S++ +L +++     ++IV F    D+D   + I+ KIA  LAD  I+T  D
Sbjct: 305 LDGSHNKESIDALLASLKKFDYDKLIVGFSILKDKD--HKDIIRKIAG-LADELIITHID 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DNPR+ D + I  E            N  +A   +++    +D+++  G
Sbjct: 362 DNPRALDTQIIDEEAKAYASDIHVIENNKQAFEFSLKEAKDKDLVLWCG 410


>gi|315149516|gb|EFT93532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0012]
          Length = 456

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +   ++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTADDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSGKDDTILL 424


>gi|66043897|ref|YP_233738.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. syringae B728a]
 gi|63254604|gb|AAY35700.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. syringae B728a]
          Length = 449

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 131/407 (32%), Gaps = 45/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     NT +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPAVEYVLNTGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGETPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIEM--GCWTPVQTTGQNGQW---QARLLSEDGSRFEVLFEGELQGAVDWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+   L ++ L     V  R E V  + RG  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPLLGVQALSAFKSVKRRMEKV-ADVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R       I+            G      + ++  AD  +          P
Sbjct: 336 AIATTLDGLRKKVGDASIIAVVEPRSNSMKLGAHRDGLRESVGQADQVV-------WYAP 388

Query: 426 EKIRAEIIHGIPGFIEKG---NRIEA-IRTAIEMLNKQDVLVVAGKG 468
             +  ++   + G        + +EA I            +V+   G
Sbjct: 389 PNLGWDLAATVAGGTVPALVCDSLEAIIAQVKSQAQPGTHIVIMSNG 435


>gi|241668958|ref|ZP_04756536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877490|ref|ZP_05250200.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843511|gb|EET21925.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 456

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 106/284 (37%), Gaps = 20/284 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +P  +  I    D   ++++          L        I + K  A ++K ++   
Sbjct: 211 RK-MPSTAKIIYNDKDENVQKIISMG---CWSELVRANSSNGISITKHTADYSKFEL-CD 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G   +  + L GE    NA+ A  +   + I   ++   LE    V  R E V ++  
Sbjct: 266 INGNTIEISWSLIGEHNALNAMSAYAVAKQLNISDEVINAALESFKGVKRRLE-VLSHQD 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +Y D+AH   S+++ L+ +R       ++           +
Sbjct: 325 NVTLYDDFAHHPTSIKLTLEAVRNKAKDAYVIALIDPRSNTMRQ 368


>gi|227497588|ref|ZP_03927811.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
 gi|226832957|gb|EEH65340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
          Length = 506

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 129/385 (33%), Gaps = 52/385 (13%)

Query: 104 LFASRLYGK-HPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
             A RL    HPE   + VTGT GK++    +  I   +GL +  +G             
Sbjct: 116 ELAWRLQRSTHPEVPWITVTGTDGKTTTVGMLSAILTAAGLEAPAVGNIGV--------- 166

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                       +S +++ G   ++VE SS  L  H    +  +A +  NL  DH+D+H 
Sbjct: 167 ----------PTISVVAAGGAQALAVELSSFQL--HTTHSLSPLAAACLNLSADHLDWHG 214

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQG------ 274
             +AY   K R++      +  A+    D  +  ++++A     CR +  G         
Sbjct: 215 GMEAYAADKSRVYTH---AQRAAVYNLADPATLRMVEQADVVEGCRAIGFGLGAPGLGQV 271

Query: 275 ----KFIHLKKVCAIHNKQQVTISV--------EGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 +  +      + +   ++          G + D   P         A   A   
Sbjct: 272 GLVEDVMVDRAWHPRRHHEAAELATLADLAHLAPGGEVD-RLPAHIAADALAAASLALAH 330

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +  D   V   L        R   V      G  +VD +  +N+              
Sbjct: 331 PQVQADLGAVARGLRAFTPGAHRL--VTVAEGAGVTWVDDSKATNAHSTQAALSSVRPGS 388

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEI-IHGIPGFI 440
            + +V   G  +      ++ ++   L    ++  D  P  +  E    ++    +P   
Sbjct: 389 AVWIV--GGDTKGADLHELVARVRPYLRGAVVIGADPTPVLQALEDEAPDLPRRVVPAAS 446

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVA 465
            +    EA+R A  M  + D +++A
Sbjct: 447 AREVIEEAVRQASAMAQEGDTVLLA 471


>gi|330971628|gb|EGH71694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 449

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 131/407 (32%), Gaps = 45/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     NT +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPAVEYVLNTGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGETPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIEM--GCWTPVQTTGQNGQW---QARLLSEDGSRFEVLFEGELQGAVDWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+   L ++ L     V  R E V  + RG  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPLLGVQALSAFKSVKRRMEKV-ADVRGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R       I+            G      + ++  AD  +          P
Sbjct: 336 AIATTLDGLRKKVGDASIIAVIEPRSNSMKLGAHRDGLRESVGQADQVV-------WYAP 388

Query: 426 EKIRAEIIHGIPGFIEKG---NRIEA-IRTAIEMLNKQDVLVVAGKG 468
             +  ++   + G        + +EA I            +V+   G
Sbjct: 389 PNLGWDLAATVAGGTVPALVCDSLEAIIAQVKSQAQPGTHIVIMSNG 435


>gi|92114311|ref|YP_574239.1| UDP-N-acetylmuramate--L-alanine ligase [Chromohalobacter salexigens
           DSM 3043]
 gi|122419689|sp|Q1QVG8|MURC_CHRSD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91797401|gb|ABE59540.1| UDP-N-acetylmuramate--L-alanine ligase [Chromohalobacter salexigens
           DSM 3043]
          Length = 488

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 141/434 (32%), Gaps = 56/434 (12%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
             D H         GA+ +VVS+A  L++          I VV    + L+      +G 
Sbjct: 74  HVDEHAH-------GADVLVVSTAVDLENPEIRWAREHRIPVVRRA-EMLAELMRFRHG- 124

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                +AV GT GK++  S    +    G   +F IG   T +                 
Sbjct: 125 -----IAVAGTHGKTTTTSLTSTLLAEGGLDPTFVIGGKLTSAGTNARLG---------- 169

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   +G   V+    S     H    ++ +    TN+  DH+  +    A      
Sbjct: 170 --------EGDYLVAEADESDASFLH----LQPMVSIVTNIDADHMATYAGDFARLKDTF 217

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290
             F   LP    A++  DD   + ++ R      + ++ G+ +     L+       + Q
Sbjct: 218 LEFLHNLPFYGLAVLCLDDDNVRGLLPRVQR---QFVTYGFAEDADYRLRDFVQRGGEVQ 274

Query: 291 VTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            T          +    +PG     NAL A  +    G+D A + + L     V  RF+ 
Sbjct: 275 FTAERPPGMAPLEIRLGMPGRHNALNALAAIAVASDAGVDDAAIQQGLLHFAGVGRRFQV 334

Query: 349 VGTNSRGG-----RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIM 402
            G     G      +  DY H    +EM++  +R      R+++++              
Sbjct: 335 HGHYPAPGGEGDVMLVDDYGHHPREVEMVIDAVRAGWPERRLVMLYQPHRYSRTRDLYED 394

Query: 403 GKIALDLADIAIVTDDNPRSED--PEK----IRAEIIH-GIPGFIEKGNRIEAIRTAIEM 455
               L   D  ++ D     E   P      +   I   G    I   ++ E       +
Sbjct: 395 FVRVLSGVDTLLLLDVYSAGESSIPGAEGRTLAGSIRQRGQVDPIFVESKQELPALLSRV 454

Query: 456 LNKQDVLVVAGKGH 469
           L   D+L+  G G 
Sbjct: 455 LRPDDILITQGAGD 468


>gi|148543823|ref|YP_001271193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           reuteri DSM 20016]
 gi|184153225|ref|YP_001841566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227364727|ref|ZP_03848776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri MM2-3]
 gi|325682646|ref|ZP_08162163.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           reuteri MM4-1A]
 gi|167017288|sp|A5VJ32|MURD_LACRD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711917|sp|B2G6K4|MURD_LACRJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148530857|gb|ABQ82856.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri DSM 20016]
 gi|183224569|dbj|BAG25086.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227070186|gb|EEI08560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri MM2-3]
 gi|324978485|gb|EGC15435.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           reuteri MM4-1A]
          Length = 456

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 146/419 (34%), Gaps = 52/419 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-----------SLF 105
           +  +    A G + I   +  SL +    +    P +  DN                +  
Sbjct: 46  NDIVDDLEADGIKVITGDNPISLANEGFDVVVKNPGIPYDNPLVAAFVKQGTPIITEAEL 105

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
             +++  H   +++VTG++GK++  +  Q     +  +  Q+     I            
Sbjct: 106 GWQIFDGH---LVSVTGSNGKTTTTTLTQ--LMIAENAKHQVKYAGNIGISFSKIAEDLG 160

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               L   LS     G                    I       TN+  +H+DYH+T++ 
Sbjct: 161 PDDTLVTELSSFQLLGA-----------------PTIHPHIAIITNIFSNHLDYHKTREN 203

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y NAK+ +      K+   +I  D    +++ +R+         +    +  +++     
Sbjct: 204 YINAKLNI-TRNQTKDDFLVINWDRDEWQKIAQRSQATIVPFSRLNKSHEGSYVEDGMIY 262

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              Q+V  + +         L G   V NAL A       G+ +  + + L     V  R
Sbjct: 263 WRGQEVMPTKD-------IRLIGPQNVENALAAIAAAKLSGVTNDAIKKVLTTFSGVRHR 315

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            ++V       R++ + + +++ +E     ++       +++   G DR      ++   
Sbjct: 316 LQYVMEYQE--RLFYNDSKSTD-IEATEVALQGFDRP--VILLAGGLDRGYTFERLVPYF 370

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  + +  +   + +D          G+P  +E  N I A+  A ++    DV+++
Sbjct: 371 KKHVKAMIVFGECKDKMKDAGN-----QAGVP-VVESENAITAVPEAWKLSEPGDVILL 423


>gi|317484861|ref|ZP_07943753.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bilophila
           wadsworthia 3_1_6]
 gi|316923907|gb|EFV45101.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bilophila
           wadsworthia 3_1_6]
          Length = 445

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 139/461 (30%), Gaps = 95/461 (20%)

Query: 57  HLFIPQAIAQG---------------AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF 101
             F   A + G               A+ +V S   +    S  +   TP  ++  T   
Sbjct: 57  ADFAEWAESAGVEIVCGEHSPSQFRDAKLVVPSPGVAAAVISKFLPDGTPPEIMAETELA 116

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
               +        E +L VTGTSGK++  S    + +  GL+ F  G   T  S      
Sbjct: 117 WRQLSG-------EPVLGVTGTSGKTTTTSLCAAMLKEQGLTVFTGGNIGTPLSEYI--- 166

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                          LS +    V +E SS  L       +    G   N+  +H+D+H+
Sbjct: 167 ---------------LSGEKADVVVLELSSFQL--QTCSTLHPRVGILLNISENHLDFHK 209

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
               Y +AKMRLF      +   +    D  + +               G + + IH  +
Sbjct: 210 DMDEYISAKMRLFANQTETDLAVLQDGMDELAGK--------------YGIKARKIHYTE 255

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                + Q                L G     NA  A   C   G+        +     
Sbjct: 256 SDRFPDMQ----------------LMGPHNRCNAEAAWLACREFGVTEEAAARAVAAFQP 299

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +  R E V   +    +      T  +L + L +       R +V+   G  +      +
Sbjct: 300 LEHRLEKVAEINGVLYVNDSKCTTVEALRVALSSFD-----RPVVLLAGGKFKGGDLPGL 354

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR--IEAIRTAI------ 453
              +      +A+      R E                    +R   +A+R         
Sbjct: 355 CPLLKEHARCVALFGASRERFEP---------AWRDTLPVTWDRTLEQALRRVAGKDGQP 405

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            + ++ DV+++A     +     N  ++      ++ E+L 
Sbjct: 406 ALAHEGDVVLLAPACS-SYDQYPNYLRRGEDFKRVVHEVLA 445


>gi|269926713|ref|YP_003323336.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790373|gb|ACZ42514.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 474

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 126/402 (31%), Gaps = 47/402 (11%)

Query: 68  AEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ IV + A   +         +  P+L+  N            +   P  I A+TG+ G
Sbjct: 80  ADFIVRNPAVPRESKWLELARENGIPVLMEMNL----------FWRYCPAPITAITGSKG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  S++  I +     +   G                        ALS L        
Sbjct: 130 KSTTTSWLGHISKLWRPDTVVAGNLRV-------------------SALSMLPQISEDTP 170

Query: 186 SV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            + E SS  L+   + G        TN+  DH++ + + +AY+N+K  ++         A
Sbjct: 171 VILELSSWQLEAFEVGGEAPHVSCITNISYDHLNRYPSFEAYYNSKRWIYRNQ-KTTDYA 229

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DD      ++    A  R  S     K         I+   + T S          
Sbjct: 230 VFNYDDPIVSRFVEDCL-AQVRWFSRSSHVKPGGYIDNDYIYLVDE-TGSTRKLLQVHEL 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPGE    NAL AA L  A+ I    ++E L     +P R E V        I    + 
Sbjct: 288 QLPGEHNRMNALAAAVLASAMNIPDEFIVEGLRTFKGLPDRLELVSVIDGVKYINDTTST 347

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S    LK +         VV   GG         +           ++ +       
Sbjct: 348 VPASTIAALKAVEGE------VVLLAGGASKNVPFDELADFICQKKVRVVLLE----GSA 397

Query: 425 PEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVV 464
              ++  I    P  I     +   A+  A  +      +++
Sbjct: 398 TADLQTAINKRCPELIVGTFSSLESALEAARSVARPGHTVLL 439


>gi|24213538|ref|NP_711019.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           interrogans serovar Lai str. 56601]
 gi|30316039|sp|Q8F7V4|MURD_LEPIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24194322|gb|AAN48037.1|AE011269_3 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 463

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 115/350 (32%), Gaps = 42/350 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              ++ S          +  ++  I VV                     I+ +TGT GKS
Sbjct: 63  VSLVIKSPGILPTHPILSYAADKKIPVVSEI-----DLGRYF---FKGKIIGITGTDGKS 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  + + S     + G                P   +  +++S    +  ++   
Sbjct: 115 TTTSLIAHLLKESFPDLKEGGNLG------------IPFTSFCKESISLAVLELSSYQLE 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           ++S           + L    F NL  DH++ H+T + YF AK+++  +L       I+ 
Sbjct: 163 DSSP----------LHLDVSVFLNLASDHLERHKTMENYFQAKLKI-ADLSNSNHTLIV- 210

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                 KE +  + +  C++LS G            ++  K       +   F     LP
Sbjct: 211 --SEKIKERILNSISYQCKLLSFGKTSDSNAFLDENSLKIKTS-KFVYDISKF----YLP 263

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N   +      IG     +   +     +P RF+  G       I    +   +
Sbjct: 264 GTHNRENLAASILAAEEIGGKPESIQTRIPLFRGLPHRFQIAGEKLGISFINDSKSTNLH 323

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           S+   +   + I    +I+    G  + +  +P+   +   +  + +  +
Sbjct: 324 SMLAGMATWKNIDQTCLIL---GGRPKQEDLKPLYNFLIRGIGCVVLFGE 370


>gi|58698291|ref|ZP_00373208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58535164|gb|EAL59246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 122

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R I+ G +F+A+ G   DGH F+ +A  +GA A +VS              + 
Sbjct: 27  SNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAVAAIVSEGK---------YKSF 77

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126
           P+++V +T K L   AS           ++AVTG+ GK
Sbjct: 78  PLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGK 115


>gi|325662354|ref|ZP_08150963.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471356|gb|EGC74579.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 450

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 108/291 (37%), Gaps = 19/291 (6%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L  +  +    E SS  L+   +D       +  N+  DH++ H T +AY  AK  + 
Sbjct: 151 ASLEMKEDSVTVAEMSSFQLE--TIDTFHPKVSAILNITPDHLNRHHTMEAYIQAKEEIT 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    +E   ++  +D   +   ++ H       S     + I+L+    I+   +  + 
Sbjct: 209 KNQT-EEDVCVLNYEDEVLRAFGEKLHTQVLYFSSRRKLERGIYLEDGKIIYADGKPEVL 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + ++      L G     N + A+ +  A G+  + + E +     V  R EFV     
Sbjct: 268 CKVEE----LKLLGTHNYENVMAASAMAAAYGVPLSSIRETIRNFGGVAHRIEFVAEKE- 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G  Y + +  +N  +  +K +  +    I++  G G D++      +      +  + +
Sbjct: 323 -GVAYYNDSKGTNP-DAAIKAVEAMNRPTILI--GGGYDKNSSYDEWIDSFGEKVRYLVL 378

Query: 415 VTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V          EKI       G    I      EA+  +  +  + D +++
Sbjct: 379 V------GATKEKIAETARRKGFDNVILADTFEEAVMESARLAREGDAVLL 423


>gi|330892871|gb|EGH25532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 101

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F EL+  L    +   +   + VS+DSR IQ G +FVA+ G + DGH ++ Q  A+GA  
Sbjct: 3   FSELVVPLDARLVAG-DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVG 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            +V              ++ P LVV +TRK L+   +
Sbjct: 62  ALVEREVQ--------GASLPQLVVIDTRKALAQLGA 90


>gi|291538690|emb|CBL11801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis XB6B4]
          Length = 454

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 104/276 (37%), Gaps = 27/276 (9%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++       +  N+  DH+D H T +AY  AK  + +    +++  + Y D    + 
Sbjct: 170 LETMETFHPSVSAILNITPDHLDRHHTMEAYIRAKEGITKCQTKEDTCVLNYED----EI 225

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-------FPLPG 308
           + K A      VL    +      + +      Q+ TI + GK+ +           L G
Sbjct: 226 LRKFAETLKVNVLFFSSK------RPLEEGIYLQENTIWIAGKETERQRLIDVGELKLLG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N + A+G  + +G    +V   L++   V  R EFV      G +Y + +  +N 
Sbjct: 280 IHNYENVMAASGTALCMGAPIDVVQRVLKEFWGVKHRIEFV--RDLQGVLYYNDSKATNP 337

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  ++ I ++    +++  G G D++      +      +  + ++      ++D   +
Sbjct: 338 -DAAIRGIGSMNRKTLLI--GGGYDKNLEFDAWIESFDGKVKCLLLIGQ----TKDKIAV 390

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A   HG    +      EA+     +    + +++
Sbjct: 391 CAR-KHGFENIVCCDTLNEAVNICYRLAKPGEAVLL 425


>gi|319404512|emb|CBI78117.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 468

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 140/389 (35%), Gaps = 47/389 (12%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +       +A+TGT+GKS+  + +  + ++ G      G   T                 
Sbjct: 116 FDDQDVPFIAITGTNGKSTTTALLAHLLEKMGYDVQMGGNIGT----------------- 158

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               L+           +E SS  ++      ++   G   NL  DHID H + + Y   
Sbjct: 159 --AILTLKPFVKKRIYVIECSSFQIELA--PSLQPTVGLLLNLTPDHIDRHGSFERYVQV 214

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCA 284
           K    E ++ + S A+I  D      + ++  + G  +  V  +     G ++   K+ A
Sbjct: 215 K----ERVVSRASRALISIDSLVCCALYQKLFDEGYPIDPVSKEHVVKNGFYVEGTKLFA 270

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           I+  Q   ++    D   +  L G     NAL+A      + I +  + EHL     +  
Sbjct: 271 IYYGQHHMLA----DLANIASLRGSHNAENALMALATLQILKITTLDIEEHLASYLGLAH 326

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + V     G  ++++ +  +N+ E  +  + T  +   IV    G  ++ G   + G 
Sbjct: 327 RMQQVC--KIGSILFINDSKATNA-EASVPALTTFNNIFWIV---GGQAKEGGIDALKGF 380

Query: 405 IALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    I  T +N        I +     +   +E   R  A   A +M  +++ +V
Sbjct: 381 FYKIRKAYLIGSTAENFAR----IIGSAFPFSMSLTLENAVREAASDAARDM--EKEAVV 434

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +      +     N E +      ++ ++
Sbjct: 435 LFSPACASYDQFKNYEVRGETFVSLVMQL 463


>gi|310820716|ref|YP_003953074.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309393788|gb|ADO71247.1| Tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 437

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 133/409 (32%), Gaps = 59/409 (14%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---- 151
           +  R+ L+              L V GT+GK S  +F       +G              
Sbjct: 27  ERVREALAALGHPERRYPS---LHVAGTNGKGSTCAFATAALSVAGHRVGLYTSPHLSRV 83

Query: 152 --------------TISSFAQDNRLTTPSPIYLAKALSYLSSQGV---THVSVEASSHGL 194
                          +     +     P   +    L+Y     V    H + E  S  +
Sbjct: 84  NERFQVAGDDISDEVLGRRILEVLARYPEAAHTPAPLTYFEFATVVALWHFAQEGVSVAV 143

Query: 195 DQHRLDG-------IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
            +  L G       +  +  + T +  DH+DY   T +A    K  +   L P     + 
Sbjct: 144 LETGLGGRLDATNTVTPLVTAITPVSFDHMDYLGNTLEAIAGEKAGI---LKPGVPAVLS 200

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--- 303
             +    + +++ A   G  VL    + +   L        +   T +  G  F      
Sbjct: 201 RQEPEALRALVRVADEVGAPVL---LEDRDFALAS------EPGGTFAYRGTRFQLEGLS 251

Query: 304 FPLPGEFQVYNALVAAGLCIAIG-----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             L G  Q  NA VA      +      + +      L       GR E +G       +
Sbjct: 252 LALRGLHQRQNAAVALAALEQLDARGVAVSAEAARAGLASARWP-GRLEELGCQPP---V 307

Query: 359 YVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +D AH    ++++L ++  +  GR +  VFG   D+D+G  P+M  +    A + +   
Sbjct: 308 LLDGAHNPAGMKVLLASLEALYPGRALHAVFGVVADKDRG--PMMQGLFPRCASVHLTPL 365

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D PRS  PE+   E            +  +A+  A       DV++  G
Sbjct: 366 DTPRSLPPERYLPEAQALCAAVYAYASLDDALAGARSQARPGDVILCTG 414


>gi|45658619|ref|YP_002705.1| UDP-n-acetylmuramoylalanine--d-glutamate ligase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|60390496|sp|Q72NP4|MURD_LEPIC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|45601863|gb|AAS71342.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 463

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 115/350 (32%), Gaps = 42/350 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              ++ S          +  ++  I VV                     I+ +TGT GKS
Sbjct: 63  VSLVIKSPGILPTHPILSYAADKKIPVVSEI-----DLGRYF---FKGKIIGITGTDGKS 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  + + S     + G                P   +  +++S    +  ++   
Sbjct: 115 TTTSLIAHLLKESFPDLKEGGNLG------------IPFTSFCKESISLAVLELSSYQLE 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           ++S           + L    F NL  DH++ H+T + YF AK+++  +L       I+ 
Sbjct: 163 DSSP----------LHLDVSVFLNLASDHLERHKTMENYFQAKLKI-ADLSNSNHTLIV- 210

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                 KE +  + +  C++LS G            ++  K       +   F     LP
Sbjct: 211 --SEKIKERILNSISYQCKLLSFGKTSDSNAFLDENSLKIKTS-KFVYDISKF----YLP 263

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N   +      IG     +   +     +P RF+  G       I    +   +
Sbjct: 264 GTHNRENLAASILAAEEIGGKPESIQTRIPLFRGLPHRFQIAGEKLGISFINDSKSTNLH 323

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           S+   +   + I    +I+    G  + +  +P+   +   +  + +  +
Sbjct: 324 SMLAGMATWKNIDQTCLIL---GGRPKQEDLKPLYNFLIKGIGCVVLFGE 370


>gi|260913057|ref|ZP_05919539.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pasteurella dagmatis ATCC 43325]
 gi|260632644|gb|EEX50813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pasteurella dagmatis ATCC 43325]
          Length = 456

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G DH D     +A    +       +P     +  AD+A  K  ++    +  + 
Sbjct: 185 IINNIGFDHADIFDDLKAIQR-QFHHMIRTIPANGRILSVADEANVKATLEMGCWSEKQF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326
           L     G           ++     +   G+   +  + + G+  ++NAL+A      +G
Sbjct: 244 L-----GSDKEWHAERLRNDSTVFAVFHNGEKVAEVHWNVVGQHNMHNALMAIAAAHHVG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +      E L        R E V     G  +Y D+AH    +   L  +R    G  RI
Sbjct: 299 VSIQDACEALSTFVSPKRRLE-VKGEVNGVTVYDDFAHHPAEILATLTALRDKVGGGARI 357

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           + V          G        AL  AD   +         PE I  +++  +   ++  
Sbjct: 358 LAVLEPRSNTMKMGIHKDEIAPALGRADHVFIFQ-------PENIGWDVVDIVSDCVQPA 410

Query: 444 ----NRIEAIRTAIEMLNKQDVLVVAGKG 468
               N  + +   +     +D ++V   G
Sbjct: 411 VWNMNLDKLVDLIVSEAKPKDHILVMSNG 439


>gi|288574849|ref|ZP_06393206.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570590|gb|EFC92147.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 453

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 116/339 (34%), Gaps = 47/339 (13%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + SGL +  +G                         L   + +      +E S
Sbjct: 123 SLIAHLLEVSGLDALALGNIG--------------------SPLGDFAGERRDVFVIELS 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L  H  +  +      TN+  DHID+H + + Y +AK +            +   D 
Sbjct: 163 SFQL--HWTEKSEFDISVITNIAPDHIDWHGSYENYISAKKKAISHRRDTGWSIVQEKD- 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPL 306
              + ++     +  R + +  +     LKK     N ++    +EG   D       PL
Sbjct: 220 ---RSLL--GGQSDPRTIGLTLEND---LKKDGIFINNERAIAVIEGVRHDLFMSKQVPL 271

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NA +AA  CI            L      P R +F+    + G  YVD +  +
Sbjct: 272 LGGHNIENAAMAATACILSSSRKIDWSMGLASYQAPPHRCQFIVE--KDGISYVDDSKGT 329

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           N +      +R+I  G+  VV   G  + +  R +      D    AI+       E+  
Sbjct: 330 N-VASTCTALRSIPGGK--VVILGGKGKGENYREL-ALAVKDNCRYAILL-----GEERF 380

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I   +    +  +    +  EA+  A     + D +++
Sbjct: 381 AIADALKEQNVTDWQMVESMEEAVVKASRRAKRGDTVLL 419


>gi|193214547|ref|YP_001995746.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
 gi|226711896|sp|B3QWT5|MURD_CHLT3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193088024|gb|ACF13299.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 468

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 137/373 (36%), Gaps = 45/373 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS         I+A+TGT GK++V +  ++I +  G  +        + +  Q    T
Sbjct: 102 ELASWFCK---AKIIAITGTDGKTTVTTLTKKIFEADGNENGY--HAYALGNIGQPFSDT 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QT 222
             S          LS   V    +E SS  L+       +      TN+  DH+D +   
Sbjct: 157 VES----------LSENDVAV--IEISSFQLEH--CTSFRPNVTVITNITPDHLDRYDGN 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIH 278
            Q Y  AK R+++     +   +IY DD           +R  +   +++++  +     
Sbjct: 203 IQKYAAAKYRIYQNQTASD--WLIYNDDNEILHQHFTDPERRASLPMKLVALSLEKNLGD 260

Query: 279 LKKVCAIHNKQQVTISVEGKDFDF-------LFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
             + CA     ++ + +  +                G+  +YNAL AA    A+GID   
Sbjct: 261 EYEHCAYKENGRLVLKLTNEKEWLIEENQISTKQFRGQHNIYNALTAAAAASALGIDKKF 320

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + +     V  R EFV   ++   I    A T N+L   L  +        IV+   G
Sbjct: 321 IEKSILSFEGVEHRLEFVRAVNQVDYINDSKATTVNALWYALDTVTP-----KIVLIAGG 375

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
            D+      +   +   +  +  +       E  EK+     + +   ++  +  EA+R 
Sbjct: 376 RDKGNDYTKVFSFVKEKVRAVVAI------GESQEKVVQAFGN-LTKVMKAFSLDEAVRL 428

Query: 452 AIEMLNKQDVLVV 464
           A +     D +++
Sbjct: 429 ASQEAEAGDTVLL 441


>gi|78183609|ref|YP_376043.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9902]
 gi|109892750|sp|Q3B0X8|MURC_SYNS9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78167903|gb|ABB25000.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9902]
          Length = 468

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 119/420 (28%), Gaps = 60/420 (14%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +V+S+A      +          I    +    L            +  +AV G+ GK+
Sbjct: 77  VVVISTAIPDTNPELENARAHQLAIWHRSDLLAALID---------QQASIAVAGSHGKT 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + ++ +  +   +G       PT+ I            S            S G      
Sbjct: 128 TTSTLITTLLIEAGED-----PTAVIGGVVPCLGSNGHSGQGRLLVAEADESDGS----- 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      L   +   G  TNL  DH D++       +      +         I  
Sbjct: 178 -----------LVKFRPSLGVITNLELDHTDHYDGLDDLIST----LQRFGGGCERLIAN 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            DD     +++          +   +        +    ++        G    DF  P+
Sbjct: 223 YDDP----ILQEHFEPTAWWSNKQSENIAFAALPLQLDGDRCTARFYENGSAVGDFTLPM 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NA  A   C   GI    ++E L +L     RF+  GT   G  I  DYAH  
Sbjct: 279 AGLHNLSNATAALAACRMEGIPFEALVEGLAQLQAPGRRFDLRGTWE-GRHIVDDYAHHP 337

Query: 367 NSLEMILKNIRTI----------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + +   L   + +             R++ VF         +       AL   D  ++ 
Sbjct: 338 SEVRATLTMAQLMVSSGRSPLPSPPQRLVAVFQPHRFSRTQQFFEAFAEALQNCDALLLA 397

Query: 417 DDNPRSED--PEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
                 E   P      +   I        IE    +  +   ++      D+++  G G
Sbjct: 398 PVYAAGEQTIPGVCSNALAQRIRSLRPDLEIEVAENLNQLTDLVKQRSRPDDLVLAMGAG 457


>gi|312143939|ref|YP_003995385.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904590|gb|ADQ15031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 454

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 16/278 (5%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +         + N   DH+D H++++ Y NAK ++F +   +   A+I
Sbjct: 164 LELSSFQLEA--VKNFHPKIALYLNYSPDHLDRHKSEENYKNAKKKIFSQQ-NRSDYALI 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y  E+  +       + +   +   I ++   AI  K       E  DFD     
Sbjct: 221 DLDDKYLAEIKNQIKAELFTISAFNKKADVI-IENNKAILQKNGEDKKQELIDFD-KLNF 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                  N   AA      G     +    +K  +   R E +  N RG  I  D   T+
Sbjct: 279 SALHNKKNITFAALAAYLSGQKLEKIKHAAQKYELKSHRMEKID-NDRGYLIIDDSKATN 337

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            S    L  ++++   R I++   G DR      +  +I   ++ + ++       E  +
Sbjct: 338 PS--AALNAVKSLD--RDIILIAGGQDRGADFSQLAEEIKKRVSTLILI------GETSD 387

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+ A +        +  N  +A   A E L++ + L++
Sbjct: 388 KLAAAVGESNLEIFKAENMEKAAEIAAEKLSENNCLLL 425


>gi|111221632|ref|YP_712426.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia alni ACN14a]
 gi|123338790|sp|Q0RNN9|MURC_FRAAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|111149164|emb|CAJ60847.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia alni ACN14a]
          Length = 588

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 100/298 (33%), Gaps = 37/298 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G + +V SSA + +D    + + +  L V    ++L    +         ++AV G+ G
Sbjct: 70  AGVDVVVASSALA-EDHPEIVAARSLGLAVRRRSEWLPELTAGY------RLVAVAGSHG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+ ++ +  + + +GL      PT+ I +          +       L      G    
Sbjct: 123 KSTTSAMLTLVLRAAGLD-----PTAVIGAEVSQLGGNALAGSGDLFVLESDEYGGAFA- 176

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                          G++      TN+  +H D     +A        F   +      +
Sbjct: 177 ---------------GLEPTIAVITNVEWEHPDIFPD-EASVRTAFTAFARRVRPGGRLV 220

Query: 246 IYADDAYSKEVMKRAHN----AGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEG 297
           +  DD     V+   H     A   VL  G+    + + + +  V      + V +    
Sbjct: 221 VCGDDPGVAAVLAELHRQGTPAAAPVLDYGFGTDRRWRAVDVATVAGDDTARAVVLHGGQ 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +       +PG   + NAL    +   +G+  A  L  L        RFEFVG    G
Sbjct: 281 EIGTLTLAVPGRHSLLNALAVLAVATELGVAPAQTLATLATYTGAARRFEFVGFWRAG 338



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 16/127 (12%)

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           I  DYAH    + + L   R  T GR +  V                  A   AD   VT
Sbjct: 443 IIDDYAHHPTEIRLTLAAARARTHGRALWAVLQPHTYSRFAALLDGFATAFADADRVYVT 502

Query: 417 DDNPRSED------PEKIRAEII-HGIPGFI---EKGNRIEA-IRTAIEM---LNKQDVL 462
           D     E       P  +   ++   + G++   E  +R+ A +R  +          +L
Sbjct: 503 DIYAARETDDLGRHPTDLVERLVGPAVVGYVPWPELVDRLAADVRDTLSGPVPAQAGGIL 562

Query: 463 VV-AGKG 468
           ++  G G
Sbjct: 563 LLTLGAG 569


>gi|281412291|ref|YP_003346370.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373394|gb|ADA66956.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotoga
           naphthophila RKU-10]
          Length = 430

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 127/382 (33%), Gaps = 62/382 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P+ ++ +TGT GKS+  + +  +    G  SF  G   T +                   
Sbjct: 101 PKKVVGITGTDGKSTATALMHHVLSERGFKSFLGGNFGTPAV------------------ 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                     +  +E SS  L       +        N+  DH+D+H + + Y ++K  L
Sbjct: 143 --EALEGEYDYYVLEMSSFQLFWSERPYLSNF--LVLNISEDHLDWHSSFEEYVDSK--L 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L  E    +Y         ++   +      +                +   +  +
Sbjct: 197 KPAFLQTEGDLFVYNKHIERLRNLEGVRSRKIPFWT--------------GENFATEREL 242

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            V GK +      P +    N L  + L + +  +    LE L     +P R E++G   
Sbjct: 243 IVHGKKYTLPGNYPYQ-TRENILAVSILYMEMFNELESFLELLRDFKPLPHRMEYLG-QI 300

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G   Y D   T  S   +L  +        +V+  CG  + +     + K +  L  + 
Sbjct: 301 DGRHFYNDSKAT--STHAVLGALSNFDK---VVLIMCGIGKKENYSLFVEKASPKLKHLI 355

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +            +I  E+   +         N  EA   A+E+  K DV++++  G  +
Sbjct: 356 MF----------GEISKELAPFVGKIPHSIVENMEEAFEKAMEVSEKGDVILLS-PGGAS 404

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             +  N  K+     +  RE+ 
Sbjct: 405 FDMYENYAKR----GEHFRELF 422


>gi|86358452|ref|YP_470344.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           etli CFN 42]
 gi|118595680|sp|Q2K6B9|MURD_RHIEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86282554|gb|ABC91617.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CFN 42]
          Length = 470

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 109/288 (37%), Gaps = 31/288 (10%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++  +     + +V +   F+     R         +A+TGT+GKS+  + +  I
Sbjct: 79  HPKPHWTVDLARAAGVDIVGDVELFVRE---RRAHAPDCPFIAITGTNGKSTTTALIAHI 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G  +   G   T                     L+    +   +  VE SS+ +D 
Sbjct: 136 LKSAGYDTQLGGNIGT-------------------AVLTLDPPKAGRYYVVECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   NL  DH+D H T Q Y + K RL          AI+  DD++S  +
Sbjct: 177 A--PTLNPSAGILLNLTPDHLDRHGTMQHYADVKERLVAG----SDVAIVGIDDSHSALI 230

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNA 315
             R   AG +V+ +  +           I   Q V    +   D D +  L G     NA
Sbjct: 231 ADRVERAGVKVVRISRRNAVASGIYAEGIRLVQAVGGAMLPFADLDGIQTLRGSHNAQNA 290

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             A   C+A+G+ +  +   L     +  R + VG   RG  ++V+ +
Sbjct: 291 AAAVAACLAVGVSADAIRAGLASFPGLKHRMQPVG--KRGRVVFVNDS 336


>gi|15643006|ref|NP_228048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           maritima MSB8]
 gi|30316146|sp|Q9WY76|MURD_THEMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4980732|gb|AAD35325.1|AE001707_12 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           maritima MSB8]
          Length = 430

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 126/380 (33%), Gaps = 58/380 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P+ ++ +TGT GKS+  + +  +    G  +F  G   T +                   
Sbjct: 101 PKKVVGITGTDGKSTATALMYHVLSGRGFKTFLGGNFGTPAV------------------ 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                     +  +E SS  L       +        N+  DH+D+H + + Y ++K  L
Sbjct: 143 --EALEGEYDYYVLEMSSFQLFWSERPYLSNF--LVLNISEDHLDWHSSFKEYVDSK--L 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L  E    +Y         ++   +      +                +   +  +
Sbjct: 197 KPAFLQTEGDLFVYNKHIERLRNLEGVRSRKIPFWT--------------DENFATEKEL 242

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            V GK +      P +    N L  + L + +  +    LE L     +P R E++G   
Sbjct: 243 IVRGKKYTLPGNYPYQ-MRENILAVSVLYMEMFNELESFLELLRDFKPLPHRMEYLG-QI 300

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G   Y D   T  S   +L  +        +V+  CG  + +     + K +  L  + 
Sbjct: 301 DGRHFYNDSKAT--STHAVLGALSNFDK---VVLIMCGIGKKENYSLFVEKASPKLKHLI 355

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +            +I  E+   +         N  EA   A+E+  K DV++++  G  +
Sbjct: 356 MF----------GEISKELAPFVGKIPHSIVENMEEAFEKAMEVSEKGDVILLS-PGGAS 404

Query: 472 VHIVTNGEKKMSVDCDIIRE 491
             +  N  K+     +I + 
Sbjct: 405 FDMYENYAKRGEHFREIFKR 424


>gi|322834422|ref|YP_004214449.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602]
 gi|321169623|gb|ADW75322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602]
          Length = 438

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 141/400 (35%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S   +L   + +  +   + ++ +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIISSPGVALATPALSAAAEAGVEIIGDIELF--------CRETQTPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                         +  +         +
Sbjct: 118 TVTTLVGEMAKAAGWRVGVGGNIGL--------------------PVLTMLDHEYDLFVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH+D +    Q Y  AK++++E      +  ++
Sbjct: 158 ELSSFQLE--TTHSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLKVYEN----AALCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADDA +  V      A  R +S G      HL        +  + + V G+       +
Sbjct: 212 NADDALTMPV----RGADKRCVSFGVDVGDYHL-----TRQQDDIWLRVRGEKVLNTREM 262

Query: 307 P--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G     NAL A  L  A+GI  A  L+ L     +  RF+    ++    I    A 
Sbjct: 263 PLTGRHNYTNALAALALADAVGIPHASSLKALTTFTGLAHRFQVAWQHNGVRWINDSKAT 322

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L  +     G + ++   G  +     P+   +  D   I     D      
Sbjct: 323 NVGSTEAALNGL--HVEGTLHLLL-GGDGKSADFSPLTRYLQGDNLRIYCFGRD------ 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                A++   +    E     +A+R     +   D++++
Sbjct: 374 -GAELADLRPDVSSLFET--MEQAMRDISTRVVSGDMVLL 410


>gi|307275476|ref|ZP_07556618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2134]
 gi|306507864|gb|EFM76992.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2134]
 gi|315171930|gb|EFU15947.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1342]
          Length = 456

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|161525944|ref|YP_001580956.1| UDP-N-acetylmuramate [Burkholderia multivorans ATCC 17616]
 gi|189349337|ref|YP_001944965.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|160343373|gb|ABX16459.1| UDP-N-acetylmuramate [Burkholderia multivorans ATCC 17616]
 gi|189333359|dbj|BAG42429.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
          Length = 461

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 113/361 (31%), Gaps = 30/361 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     +      +   T S  ++ +A  Y
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL--IGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++                       +       NL  DH D      A    +      
Sbjct: 163 DTAFFDKRSKFVHY------------RPRTAVLNNLEFDHADIFPDLAAI-ETQFHHLVR 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     +        + V+  A      V   G  G +  L     +   ++  +   
Sbjct: 210 TVPGVGRIVTNGRSDALERVL--ARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSH 267

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +   +  + + GE    NAL A      +G+  A     L     V  R E  G +  G
Sbjct: 268 AERVGEVAWQVQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRMEVRG-SVDG 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
             +Y D+AH   ++E  +  +R         I+              +  ++   LAD  
Sbjct: 327 VTVYDDFAHHPTAIETTIAGLRARIGRQNSRILAVLEPRSNTMKLGVMKAQLPASLADAD 386

Query: 413 AIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            +     P   D          + +      F +    ++A+  A       D ++V   
Sbjct: 387 LVFGYGAPSGRDALGWNLGDALSPLGDKARAFDDLHLLVKAVAQA---ARPGDHVLVMSN 443

Query: 468 G 468
           G
Sbjct: 444 G 444


>gi|28867957|ref|NP_790576.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28851193|gb|AAO54271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331018876|gb|EGH98932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 449

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 127/407 (31%), Gaps = 45/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + S     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVVGNALSRGNPSVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGETPFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V+K        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 222 TEPALSRVIKM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGELQGAVEWDMT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL        +G+   L ++ L     V  R E V  +  G  IY D+AH   
Sbjct: 277 GLHNVANALATLAAARHVGVVPLLGVQALSAFKSVKRRMEKV-ADVHGITIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R       I+            G        ++  AD  +          P
Sbjct: 336 AIATTLDGLRKKVGDAPIIAVIEPRSNSMKLGAHRDGLPESVQQADQVV-------WYAP 388

Query: 426 EKIRAEIIHGIPGFIEKG---NRIEA-IRTAIEMLNKQDVLVVAGKG 468
             +  ++   + G        + +EA I            +V+   G
Sbjct: 389 PNLGWDLAATVAGGTVPALVCDSLEAIIAQVKSQAQPGTHIVIMSNG 435


>gi|121611477|ref|YP_999284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verminephrobacter
           eiseniae EF01-2]
 gi|121556117|gb|ABM60266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verminephrobacter
           eiseniae EF01-2]
          Length = 638

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 148/465 (31%), Gaps = 84/465 (18%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL------------ 104
             F+P A   G    +V        + +   S + +  V  T     +            
Sbjct: 162 ARFVPGAFDAG----LVEGQNLHAVYCSPGLSPSAVAAVAQTCSAHGIGMGGELDLYALA 217

Query: 105 -FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
               R    +   +LA+TGT+GK++V +   Q+ QR+G S    G    I     D    
Sbjct: 218 LAGLRAADGYAPTVLAITGTNGKTTVTALTGQLLQRAGRSVALAG---NIGPTLLDTLAG 274

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 L                +E SS  L+  R  G +  A +  N+ +DH+D+H   
Sbjct: 275 HIDAGTLP-----------AVWVLELSSFQLE--RSTGFEPTAAALLNISQDHLDWHGDM 321

Query: 224 QAYFNAKMRLFEE----LLPKESPAII----------YADDAYSKEVMKRAHNAGCRVLS 269
            AY  AK R+F +    +L ++  A++              A      K         ++
Sbjct: 322 AAYAAAKARIFGQTALMVLNRQDAAVMQVSAPSAPSAPVTPALRPRAAKAPAPQPRADIT 381

Query: 270 VGYQ-------------GKFIHLKKVCAIHNKQQVTIS------VEGKDFDFLFPLP--- 307
            G               G    L +  A    Q+          V  ++      +P   
Sbjct: 382 FGADMPARAGDFGIELVGGMPWLVRASAADETQRARRRPGPPGAVPAQELQIQRLIPADA 441

Query: 308 ----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G     NAL A  L  A G   A +L  L      P R E V     G   + D  
Sbjct: 442 LRIRGRHNAVNALAALALACAAGCPLAPMLYGLRAYRGEPHRVESVAC-IDGVEFFDDSK 500

Query: 364 HTSNSLEMI----LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            T+    +     L       +GR +VV   G  + Q   P+   +A     + ++  D 
Sbjct: 501 GTNVGATVAAIDGLGAQGGPGAGRRLVVIVGGQGKGQDFAPLAAPLARHARAVLLIGCDA 560

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P       IRA +       ++      A+  A +     D +++
Sbjct: 561 P------LIRAALQDIGVPLLDAPTLPGAVELAAQHAQPGDAVLM 599


>gi|581175|emb|CAA39334.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli]
          Length = 124

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 11/116 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNL 109


>gi|257068262|ref|YP_003154517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium
           faecium DSM 4810]
 gi|256559080|gb|ACU84927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium
           faecium DSM 4810]
          Length = 503

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 147/417 (35%), Gaps = 59/417 (14%)

Query: 71  IVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S  +  +     A   +  P+             A R+        LAVTGT+GK++
Sbjct: 93  VVTSPGWRPEQPLLRAAQEAGVPVWSE-------IELARRMQAADGPAWLAVTGTNGKTT 145

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + ++ I  R+GL +   G                     L    + L   G   +++E
Sbjct: 146 TVTMLESILLRAGLRAVACGNVG------------------LPVIEAALDPAGFDVLALE 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L  H    +   A +  N+  DH+D+H   +AY  AK R++E +    +  I   
Sbjct: 188 LSSFQL--HWTQHLDCEAAAVLNVSDDHLDWHGGAEAYAAAKGRIYEGV---RTACIYNV 242

Query: 249 DDAYSKEVMKRAH-NAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQVTISVEG 297
            D  +  +++ A    G R + +G               +  +   A        ++   
Sbjct: 243 ADPTTLRLVEEADVREGARAIGIGLSTPGLSELGVIDGILADRAFLAERRTSAAELATLE 302

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                     G   V +AL AA L  A G++   V + L    +   R + + T    G 
Sbjct: 303 DLAPLGPQGAGPHVVIDALAAAALARAHGVEPWAVRDGLRAYRMGSHRAQHLATIDGIGY 362

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVT 416
           +    A    +    L+           VV+  GGD +     P++      L  + ++ 
Sbjct: 363 VDDTKATNPAAAAASLRAAER-------VVWIAGGDAKGADLGPLIAAAHDRLVGVVLLG 415

Query: 417 -DDNPRSE-----DPEKIRAEIIHGIPGFIEKGNR--IEAIRTAIEMLNKQDVLVVA 465
            DD P +       PE     I  G    +   +R   +A++ A  +    DV+++A
Sbjct: 416 RDDAPFTAALSRHAPEVPVRRIDPGDTDGVAGRSRLMEDAVQAARALAEAGDVVLLA 472


>gi|15965931|ref|NP_386284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium
           meliloti 1021]
 gi|307308241|ref|ZP_07587950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti BL225C]
 gi|307319708|ref|ZP_07599133.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti AK83]
 gi|7387920|sp|Q52953|MURD_RHIME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15075200|emb|CAC46757.1| Probable UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sinorhizobium meliloti 1021]
 gi|306894639|gb|EFN25400.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti AK83]
 gi|306901239|gb|EFN31845.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sinorhizobium
           meliloti BL225C]
          Length = 463

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 116/320 (36%), Gaps = 46/320 (14%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSL 104
           + G   D H F          A V+S    L      +S  +     + ++ +   F+  
Sbjct: 58  LRGA--DWHAF---------AAFVLSPGVPLTHPKPHWSVDLAHQAGVEIIGDVELFVRE 106

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
              R         +A+TGT+GKS+  + +  I + SG  +   G   T            
Sbjct: 107 ---RRKHAPDCPFIAITGTNGKSTTTALIAHILRTSGRDTQLGGNIGT------------ 151

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                    L+    +      VE SS+ +D      +   AG   NL  DH+D H T Q
Sbjct: 152 -------AVLTLDPPKAGRFYVVECSSYQIDLA--PTLDPTAGILLNLTPDHLDRHGTMQ 202

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVC 283
            Y + K RL          A++  DD+ S  +  R   AG +V+ +  +      +    
Sbjct: 203 HYADIKERLVAG----SGTAVVGVDDSLSSLIADRVERAGTKVVRISRRHPLAEGIYAEG 258

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +   + Q   S    D   +  L G     NA  A   C+A+GI    +++ L     + 
Sbjct: 259 SALMRAQDGASSLFTDLAGIQTLRGGHNAQNAAAAIAACLAVGISGKDIVDGLRSFPGLK 318

Query: 344 GRFEFVGTNSRGGRIYVDYA 363
            R + V    +G  ++V+ +
Sbjct: 319 HRMQPVA--KKGEVVFVNDS 336


>gi|150016657|ref|YP_001308911.1| FolC bifunctional protein [Clostridium beijerinckii NCIMB 8052]
 gi|149903122|gb|ABR33955.1| FolC bifunctional protein [Clostridium beijerinckii NCIMB 8052]
          Length = 437

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 133/385 (34%), Gaps = 42/385 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQ----------------------------I 147
            ++ + GT+GK S  +   +I    G                                 +
Sbjct: 42  KLIHIAGTNGKGSTTAMTSKILIGMGYKVGMYTSPYLEEFEERIQINGSNISKKSLVDLV 101

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLI 205
                + +   +     P+   +  AL +L    + + +  +E    G      + +   
Sbjct: 102 EEIKLVVNKVIEEGYEHPTEFEIITALMFLHFYREKIDYGVIEVGL-GGRLDSTNVLTPK 160

Query: 206 AGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               T++  DHI+      +     K  + +E +P     +        + ++K A    
Sbjct: 161 VSVITSVSLDHINILGDNLKDIAKEKAGIIKENIP---VVLYPQKKEAEEVILKIAEEKK 217

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +V  V  Q     L  +      Q V +      +   FPL GE Q+ N  VA      
Sbjct: 218 SKVYFVNEQNG--KLVDINYDDFYQNVVVKSIKNIYKIKFPLLGEHQILNLGVALSAIEV 275

Query: 325 I--GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +       L    +EK          +    +   I +D AH  + ++ + KNI      
Sbjct: 276 LCENEKIELNTSLIEKALQEVVWIGRLEVLKKKPTIVIDGAHNIDGIKALRKNIEKYFKY 335

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIE 441
             + +   G   D+  + ++ +I   LA+    +T  + R+E  E ++ EI++     I 
Sbjct: 336 NKLYLLL-GILADKQVKEMVQEI-TPLAEKVYALTPHSERAELSENLKEEILNYNSNTIA 393

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  EA   A++   ++D++VV+G
Sbjct: 394 LESYEEAFSLALKEAKEEDLIVVSG 418


>gi|88803507|ref|ZP_01119032.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Polaribacter
           irgensii 23-P]
 gi|88780519|gb|EAR11699.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Polaribacter
           irgensii 23-P]
          Length = 450

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 102/301 (33%), Gaps = 31/301 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + + G+ GK++V S +  + +    +  + +G                         L+ 
Sbjct: 106 VVIGGSHGKTTVTSMILHVLKYHERAVDYMVGAQL--------------EGFETMVHLTE 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +   V       SS    + +    K      T +  DHI+     + Y + + ++F +
Sbjct: 152 ENDFIVLEGDEYLSSPIDMRPKFHLYKPNIALITGIAWDHINVFPNFENYTD-QFKIFTD 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +      +   +DA  KEV++ + N   +     YQ     ++              +E
Sbjct: 211 AMVPGGSMVYNEEDAIVKEVVEASLNQIKK---YPYQTPNHFIEDGITY---------LE 258

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + D    + G+  + N   A  +C  +GID     E +        R E +  N +  
Sbjct: 259 TVEGDLPLEIFGKHNLQNLAGAKWICQHMGIDEDDFYEAIANFKGASKRLEKIAEN-KST 317

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAI 414
            I+ D+AH+ + +      ++       I+               +     AL+ AD A+
Sbjct: 318 VIFKDFAHSPSKVLAATNAVKEQYADRTILACLELHTYSSLNTTFLSEYHGALNAADKAV 377

Query: 415 V 415
           V
Sbjct: 378 V 378


>gi|239616914|ref|YP_002940236.1| FolC bifunctional protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505745|gb|ACR79232.1| FolC bifunctional protein [Kosmotoga olearia TBF 19.5.1]
          Length = 428

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 141/408 (34%), Gaps = 50/408 (12%)

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V   +  L L       +   N++ V GT+GK S  +F+  I + +G           I 
Sbjct: 22  VRRIKMLLELLG---NPQDSLNVVHVAGTNGKGSTVAFISSILKEAGYRVGTYISPHLID 78

Query: 155 ----------------------------SFAQDNRLTTPSPIYLAKALS--YLSSQGVTH 184
                                       +   +++  +P+   +  A++  Y   Q V  
Sbjct: 79  FTERMTINGLQIKEEVVVEILNKIRPHITEVANSKFGSPTFFEVVTAMAFVYFKQQKVDF 138

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E    G +    + +K +    TN   DH+D          AK      ++ +    
Sbjct: 139 AVLEVGL-GGENDATNVVKPLVSVITNSDYDHMDILGN-DITSIAKED--AGIIKENGFV 194

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFL 303
           +  A+      + K       R+  +G   + I  + V +    Q+  +  +  +  +  
Sbjct: 195 VTAAEGEALDVIKKIGEEKRARIYQIG---RDIKYEFVNSDLKWQRFNVKGIFSESDNLK 251

Query: 304 FPLPGEFQVYNALVAAGLCIAI-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            PL G++Q+ NA  A G    +      I    + + LE      GRFE V        +
Sbjct: 252 IPLLGKYQLINASCAVGAIEILRFYDIEISDESIRKGLENTFWP-GRFEIV---QDAPMV 307

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +D AH   + + + + +  +   +  ++   G  +D+    I+ ++A     +   +  
Sbjct: 308 VLDGAHNHLAAKRLKEALMEVLEKKDKLILVIGIMKDKEVEKIVKELAPLAYKVVATSPK 367

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            PR+     +R  ++          +   A+  A+    + D++ V G
Sbjct: 368 TPRATTSHDLREIVVKFNKNISVVEDVETALELALSEAKENDIVCVTG 415


>gi|203288244|ref|YP_002223259.1| UDP-N-acetylmuramate--alanine ligase [Borrelia recurrentis A1]
 gi|201085464|gb|ACH95038.1| UDP-N-acetylmuramate--alanine ligase [Borrelia recurrentis A1]
          Length = 486

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 139/423 (32%), Gaps = 60/423 (14%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A++ SSAY   +    + +     P+L      + +   + + Y       + V G+ GK
Sbjct: 93  ALIYSSAYDKDNLPILLEAYELGIPVLSYP---EVIGEISKKYY------SIGVAGSHGK 143

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ A+F+  +    GL    I   S++ +    + L   S +++A+   Y          
Sbjct: 144 TTTAAFLGILFHSLGLQPNLI-LGSSVKNLEDKSSLVGESNVFIAETCEY---------- 192

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                H L               TN+  +H+D+ +  +   +     +   L K    II
Sbjct: 193 ---KGHFL------SFSPDIIVLTNIDYEHVDFFKNYEEVED-IFLQYVNNLKKNGILII 242

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD+     +  +      RV SVG+       K          +     G   D     
Sbjct: 243 NADEINLFNIKNKIIRKDIRVFSVGFNS-LSDFKIEHFEIGDGFLKFDFLG-SIDIRLKT 300

Query: 307 PGEFQVYNALVAAGLCIAI---------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           P    V N  +A                  D   +     K   +  R EF+     G  
Sbjct: 301 PLIHNVLNFSIALLALKLFLEEHKKLVWNFD-ERIKIVARKYMGIKRRMEFI-MEKDGVI 358

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV- 415
              DYAH    +E  L  ++    GR IV+ F                  L   D+ I+ 
Sbjct: 359 YLDDYAHHPKEIESTLLGLKKFYDGRRIVLDFMPHTFTRTKVLFDEFVRVLSNVDVLILH 418

Query: 416 -------TDDNPR--SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   D +P+  S D      ++   +  F E G+ ++ I+    +L + D+ V  G
Sbjct: 419 NIYLSVREDFDPKRLSRDLFLSLRDLNQNVYFFEEVGDSVDFIK---GLLKRNDLFVTMG 475

Query: 467 KGH 469
            G 
Sbjct: 476 AGD 478


>gi|331086157|ref|ZP_08335239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406316|gb|EGG85830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 450

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 107/291 (36%), Gaps = 19/291 (6%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L  +  +    E SS  L+   +D       +  N+  DH++ H T + Y  AK  + 
Sbjct: 151 ASLEMKEDSVTVAEMSSFQLE--TIDTFHPKVSAILNITPDHLNRHHTMEEYIQAKEEIT 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    +E   ++  +D   +   ++ H       S     + I+L+    I+   +  + 
Sbjct: 209 KNQT-EEDVCVLNYEDEVLRAFGEKLHTQVLYFSSRRKLERGIYLEDGKIIYADGKPEVL 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + ++      L G     N + A+ +  A G+  + + E +     V  R EFV     
Sbjct: 268 CKVEE----LKLLGTHNYENVMAASAMAAAYGVPLSSIRETIRNFGGVAHRIEFVTEKE- 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            G  Y + +  +N  +  +K +  +    I++  G G D++      +      +  + +
Sbjct: 323 -GVAYYNDSKGTNP-DAAIKAVEAMNRPTILI--GGGYDKNSSYDEWIDSFGEKVRYLVL 378

Query: 415 VTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V          EKI       G    I      EA+  +  +  + D +++
Sbjct: 379 V------GATKEKIAETARRKGFDNVILADTFEEAVMESARLAREGDAVLL 423


>gi|15889380|ref|NP_355061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           tumefaciens str. C58]
 gi|30316074|sp|Q8UDM6|MURD_AGRT5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15157230|gb|AAK87846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           tumefaciens str. C58]
          Length = 469

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 107/292 (36%), Gaps = 39/292 (13%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    +S  +     + V+ +   F      R         +A+TGT+GKS+  + +  I
Sbjct: 79  HPKPHWSVDLAKAAGVEVIGDIELF---IRERRVHAPDCPFIAITGTNGKSTTTALIAHI 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            Q SG  +   G   T                     LS    +      VE SS+ +D 
Sbjct: 136 LQSSGRDTQLGGNIGT-------------------AVLSLDPPKAQRFYVVECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                I   AG   NL  DH+D H T Q Y + K RL          AI+  DD++S  +
Sbjct: 177 A--PTINPTAGILLNLTPDHLDRHGTMQHYADVKERLVAG----SGTAIVGVDDSHSTLI 230

Query: 257 MKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             R   AG +V  +       +G +    ++   H      +     D D +  L G   
Sbjct: 231 ADRIERAGVKVERISKRNVVSEGLYAEGSQILRAHGGTSSLL----VDLDGIQTLRGSHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             NA  A   C+A+G+    +   L+    +  R + VG   RG   +V+ +
Sbjct: 287 AQNAAAAIAACLAVGVSEEEIRAGLKSFPGLKHRMQPVG--RRGNVTFVNDS 336


>gi|257086352|ref|ZP_05580713.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis D6]
 gi|256994382|gb|EEU81684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis D6]
 gi|315026969|gb|EFT38901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2137]
          Length = 456

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLI--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|308273170|emb|CBX29773.1| hypothetical protein N47_F14680 [uncultured Desulfobacterium sp.]
          Length = 437

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 135/387 (34%), Gaps = 49/387 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF-------------------QIGPTST 152
           ++  + + + GT+GK SVAS +  I Q++G                        I   + 
Sbjct: 48  QNNYSCIHIAGTNGKGSVASSLSAILQKAGYKVGLFTSPHFVTFNERIRTNNRLISNKNV 107

Query: 153 ISSFAQDNRLTTPS------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           + S+   N++   S          A AL   S + V   +V  +  G      + I+   
Sbjct: 108 VESYNAVNQVHKGSREPTFFEFTTAMALYEFSKEKVD-WAVIETGMGGRLDATNVIQPEI 166

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAG 264
              TN+  +H  Y   T +     K  + +   P         A +     +   A    
Sbjct: 167 TIVTNISLEHKKYLGTTIEQIAGEKGGIIKRGKPVITGAKQKNAIN----TLNNIAAKKR 222

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +  +G   K    K     +        +     D    L G+ Q+ NA +    C  
Sbjct: 223 APIYLLGNNFKIKKKKDGTFSY------FGINNVWPDMQINLHGDHQIENAALVLAACEI 276

Query: 325 I----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    +   L++ +   GR E V ++     + +D AH  N+ + +   +    
Sbjct: 277 LEKKTNLSEKHIRAGLKQTNWP-GRLEIVSSS---PCVILDGAHNLNASQALHNFLSKEY 332

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGF 439
            GR I V       D      M K  L ++D AI+T     R+ +PEK+ A   + +   
Sbjct: 333 KGRKITVVTGML--DDKPYKSMLKNILSVSDRAILTKPQIDRALEPEKLYAVSKNLVKDI 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  EA++ A+E     +V+ + G
Sbjct: 391 KIIPKVDEAVKYALETALPDEVICITG 417


>gi|240144189|ref|ZP_04742790.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|257203793|gb|EEV02078.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
          Length = 454

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 104/276 (37%), Gaps = 27/276 (9%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++       +  N+  DH+D H T +AY  AK  + +    +++  + Y D    + 
Sbjct: 170 LETMETFHPSVSAILNITPDHLDRHHTMEAYIRAKEGITKCQTKEDTCVLNYED----EI 225

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-------FPLPG 308
           + K A      VL    +      + +      Q+ TI + GK+ +           L G
Sbjct: 226 LRKFAETLKVNVLFFSSK------RPLEEGIYLQENTIWIAGKETERQRLIDVGELKLLG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N + A+G  + +G    +V   L++   V  R EFV      G +Y + +  +N 
Sbjct: 280 IHNYENVMAASGTALCMGAPIDVVQRVLKEFWGVKHRIEFV--RDLHGVLYYNDSKATNP 337

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +  ++ I ++    +++  G G D++      +      +  + ++      ++D   +
Sbjct: 338 -DAAIRGIGSMNRKTLLI--GGGYDKNLEFDAWIESFDGKVKCLLLIGQ----TKDKIAV 390

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A   HG    +      EA+     +    + +++
Sbjct: 391 CAR-KHGFENIVCCDTLNEAVNICYRLAKPGEAVLL 425


>gi|18310900|ref|NP_562834.1| FolC bifunctional protein [Clostridium perfringens str. 13]
 gi|18145582|dbj|BAB81624.1| folyl-polyglutamate synthetase [Clostridium perfringens str. 13]
          Length = 440

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 139/386 (36%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +G                   I+    +        
Sbjct: 40  KFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENINKDDLAILM 99

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLDG---IKLIA 206
             + KA+  +   G    +       L  +                  RLD    +    
Sbjct: 100 GDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGGRLDATNVVLPEV 159

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    T +     K  + +  +P     I Y  +  + EV+K   N   
Sbjct: 160 VVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVP----VISYPQEEKALEVIKERCNELG 215

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L V    + I    +    + Q++ +S+E +  +    L G+ QV N LVA    I +
Sbjct: 216 CNLEV-VNTEDIKNIIIDKEKHVQKIEVSLEDEILEIDLGLLGDHQVKNFLVALKTLIKL 274

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                 I +  + +  +K+  + GR E +  N     + +D AH  + +  +  +I    
Sbjct: 275 RNNGVNISNEAIKQGFKKVRWI-GRMEVLNEN---PLVVIDGAHNIDGIRNLRNSIDKYF 330

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + I +   G   D+    ++ +I   +  + IV   + R+ED E +  ++   +    
Sbjct: 331 NFKNITLIL-GVLGDKQVDEMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVEKYVKEVF 389

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  EA   A    N  D+L++ G
Sbjct: 390 KFKDYKEAYNKAYSFTNDDDLLLICG 415


>gi|296113749|ref|YP_003627687.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
 gi|295921443|gb|ADG61794.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
          Length = 469

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 137/394 (34%), Gaps = 40/394 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGK 126
           A+ I++S     +  S        I VV + + F+    A  L       ++A+TG++ K
Sbjct: 62  ADQIIISPGIDPRTPSIAAAKAQGIPVVSDVQLFIDTLKARDLAQATNTPVIAITGSNAK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V + V ++ +R+G+     G   T                    AL  L+ Q +  V 
Sbjct: 122 STVTTLVGEMAKRAGMIVGVGGNIGT-------------------PALELLTIQNMDLVV 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE        AII
Sbjct: 163 LELSSFQLEH--ISNLAAQGATILNLSADHLDRHDGMADYLAQKLRIFEHC----QTAII 216

Query: 247 YADDAYSKE----VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             DDA   +     ++R       + +            +    +   +    +      
Sbjct: 217 CQDDAGLAKQCLTTLQRIAPNHTIITTNSLLSHQTADFYLFDDGDGMALYHQKDKLLPIH 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+  + NAL A  L  A  +    +L+ L+    +P R E++             
Sbjct: 277 QLKIKGKHNLLNALSALALGTAANLPMDAMLDTLKTFKGLPHRCEYIDDIDGKAYFNDSK 336

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
                S    +  + T+     + +   G  + Q    +   +    AD   +       
Sbjct: 337 GTNIGSTMAAIDGLGTVYGTSSLALILGGLGKGQDFSELSAYV-TQWADSVYLI-----G 390

Query: 423 EDPEKIRAEIIHG----IPGFIEKGNRIEAIRTA 452
           +D   I  +++ G    +    + G   +A+  A
Sbjct: 391 QDAPMIEQDLLKGDAHLVSKIYQVGTLDQAVLAA 424


>gi|221213225|ref|ZP_03586200.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD1]
 gi|221166677|gb|EED99148.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD1]
          Length = 461

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 113/363 (31%), Gaps = 34/363 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +        + V+  A      V   G  G +  L     +   ++  + 
Sbjct: 208 VRTVPGVGRIVTNGRSDALERVL--ARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVY 265

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +   +  + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 266 SHAERVGEVAWQVQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGRQNSRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              +     P   D          + +      F +    ++A+  A       D ++V 
Sbjct: 385 ADLVFGYGAPSGRDALGWNLGDALSPLGDKARAFDDLHLLVKAVAEA---ARPGDHVLVM 441

Query: 466 GKG 468
             G
Sbjct: 442 SNG 444


>gi|1841788|gb|AAB47522.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus elongatus PCC
           7942]
          Length = 280

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 96/290 (33%), Gaps = 35/290 (12%)

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---G 274
           D++   +A  +     F+      S  I   D    +       +     +S  +    G
Sbjct: 2   DHYCDLEAVIST----FKTFSDNCSQLIANWDCPTVR-------DRLPGTISYSFDPARG 50

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
               + +V    +  Q  I   G+       PL     + NAL A   C  +G+D A + 
Sbjct: 51  ADYTVDQVSFRGSGTQARIWERGELLGRIHLPLMEAHNLSNALAAIAACRHLGMDFASIR 110

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK----------NIRTITSGR 383
           E L        RFEF G +++G +   DYAH  + L   L           +       R
Sbjct: 111 EGLAGFEGARRRFEFRG-SAQGIQFVDDYAHHPSELAATLAAARLQIDSGCSRLPEVPKR 169

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEK-----IRAEIIHGIP 437
           ++ +F                 +   AD+ +++D     E +P +     +   I     
Sbjct: 170 LVAIFQPHRYSRTQAFLAEFAQSFGPADLVLISDIYAAGERNPGQLSGQTLADAIAQYQA 229

Query: 438 GFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                 + +EA+     ++L   D+ +  G G+    ++       + D 
Sbjct: 230 NVHYAPD-LEAVEQRLHQLLQPGDLALFLGAGN-LNQVIPRLLDHYACDR 277


>gi|149007558|ref|ZP_01831193.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
 gi|147760917|gb|EDK67887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
          Length = 122

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIH 434
           + T  +G+I +V G  G++ + +R   G +     +I   +T D+P  EDP  I  EI  
Sbjct: 2   VETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYEDPMAIADEISS 61

Query: 435 GIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            I   +E   +R EAI+ A+ + N + D +++AGKG +   I+   ++    D  +    
Sbjct: 62  YINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQGKKESYPGDTAVAENY 121

Query: 493 L 493
           L
Sbjct: 122 L 122


>gi|71736429|ref|YP_276770.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556982|gb|AAZ36193.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 472

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 133/410 (32%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 88  VVVGNALSRGNPAVEYVLNKGLPYVSGP----QWLADHVLQD--RWVLAVAGTHGKTTTS 141

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 142 SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGDTPFFVVEADEY 185

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 186 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 244

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 245 TEPALSRVIEM--GCWTPVQTTGDGGQW---QARLLSEDGSRFEVLFEGELQGAVEWDMT 299

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  +L ++ L     V  R E V    RG  IY D+AH   
Sbjct: 300 GQHNVANALATLAAARHVGVVPSLGVQALSAFKSVKRRMEKV-AEVRGITIYDDFAHHPT 358

Query: 368 SLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R  I    II V     +  + G        ++  AD  +      +  D 
Sbjct: 359 AIATTLDGLRKKIGDAPIIAVIEPRSNSMKLGAHRDGLPESVSQADQVVWYAPPNLGWD- 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     A  + G        + +EA I      +     +V+   G
Sbjct: 418 ---------LAATVAGGSVPSTVCDSLEAIIARVHSQVQPGTHIVIMSNG 458


>gi|326390736|ref|ZP_08212290.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993273|gb|EGD51711.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 429

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 140/411 (34%), Gaps = 65/411 (15%)

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
           +N R+ L        G   +N+  + V GT+GK S ++F+  I Q++G            
Sbjct: 23  ENIRRLL-----NYMGNPQKNLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLE 77

Query: 153 -------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                  I+              Y+   +S +  +G  H +       +        K+ 
Sbjct: 78  EFEERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVD 137

Query: 206 ----------------------AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKES 242
                                     T +  DH D    T       K      ++ +  
Sbjct: 138 FVVLEVGLGGRFDATNAIDFSLVSVITTIDYDHTDRLGHTLGEIAYEKA----GIIKRNG 193

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             + +     + +V+  A       L+V  +        V          I    K  D 
Sbjct: 194 VVVSFYQQPEALKVIIEACEVRNAYLTVLEKS------NVIIKEQNPDFQIFDYKKYKDL 247

Query: 303 LFPLPGEFQVYNALVAAGLCIAIG-----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              L GE Q+YNA +A      +      I    + E L +     GR E +    +   
Sbjct: 248 KITLLGEHQIYNAALAIESVEKLKMYGYEITEKDIREGLYRAKWP-GRLEVM---RKKPY 303

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +D AH    + ++ ++++     ++I+V G   D+D  K      I +  ADI I T 
Sbjct: 304 VVIDGAHNPQGMTVLKESLKLFKYDKLILVIGMLKDKDTQKML---DIIVPEADIIITTT 360

Query: 418 DNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             P SE   K  +E+   I     I   N  EA++ A+++  ++D+++  G
Sbjct: 361 --PISERAYK-ASELAERIEKEKVIAIENIEEAVKYALDIAKEEDMVLFCG 408


>gi|218509398|ref|ZP_03507276.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli Brasil 5]
          Length = 248

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 73/224 (32%), Gaps = 16/224 (7%)

Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD-------FLFPLPGEFQ 311
           A +   +    G      +  K V     +    + +  +           + P+PG   
Sbjct: 5   AASRTAKSSPYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRHN 64

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NA  A  +   +GI S  + + L     V  RF   G    G +I+ DY H    ++ 
Sbjct: 65  ISNATAAIAVANRLGISSVDIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKA 123

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK---- 427
           +L+  R    GRII V                    + AD   +       ED  +    
Sbjct: 124 VLRAAREACKGRIIAVHQPHRYSRLASLFEEFAACFNDADSIFLAPVYAAGEDAIEGVDS 183

Query: 428 --IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
             + + I  G        +  E + +   E+    D +V+ G G
Sbjct: 184 TSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAG 227


>gi|315173293|gb|EFU17310.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1346]
          Length = 456

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   +   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAESVQTAVTIAFDYSEKDDTILL 424


>gi|169343556|ref|ZP_02864555.1| FolC bifunctional protein [Clostridium perfringens C str. JGS1495]
 gi|169298116|gb|EDS80206.1| FolC bifunctional protein [Clostridium perfringens C str. JGS1495]
          Length = 441

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 142/386 (36%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +G                   I+    +        
Sbjct: 41  KFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENINKDDLAVLM 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLDG---IKLIA 206
             + KA+  +   G    +       L  +                  RLD    +    
Sbjct: 101 GDVKKAIDKVMKLGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGGRLDATNVVIPEV 160

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    T +     K  + +  +P     I Y  +  + EV+K   N   
Sbjct: 161 VVLTSISLDHMNILGNTIEEITKEKCGIIKSGVP----VISYPQEEKALEVIKERCNELG 216

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L V    + I    +    + Q++ +S+E +  +    L G+ QV N LVA    I +
Sbjct: 217 CNLEV-VNTEDIKNIIIDKEKHVQKIEVSLEDEILEIDLGLLGDHQVKNFLVALKTLIKL 275

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                 I +  + E  +K+  + GR E +  N     + +D AH  + +  +  +I    
Sbjct: 276 RNNGVNISNESIKEGFKKVRWI-GRMEVLNEN---PLVVIDGAHNIDGIRSLRNSIDKYF 331

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + I +   G   D+    ++ +I   +  + IV   + R+ED E++  ++   +    
Sbjct: 332 NFKNITLIL-GVLGDKQVDEMVEEITRGVDKVVIVEPHSDRAEDIEELYIKVKKYVKEVF 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  +A   A  + N+ D+L++ G
Sbjct: 391 KFKDYKDAYNKAYSLTNRDDLLLICG 416


>gi|84394436|ref|ZP_00993152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           splendidus 12B01]
 gi|84374935|gb|EAP91866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           splendidus 12B01]
          Length = 438

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 136/399 (34%), Gaps = 59/399 (14%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ ++ +   +L   +    I++ TP  VV +              K    ++A+TG++G
Sbjct: 69  ADLVIANPGIALATPEIQDVIQAGTP--VVGDI-----ELFGWAVDKP---VVAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL+   +G    I   A D          L               
Sbjct: 119 KSTVTDLTGVLAKAAGLN---VGVGGNIGIPALDLLELDADLYVL--------------- 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SS  L+      + L A +F NL  DH+D +Q    Y +AK+R+F         AI
Sbjct: 161 --ELSSFQLE--TTSSLNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIF----NNAQYAI 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D       +   +    +++ G   +   +  +           + +         
Sbjct: 213 VNREDK------ETYPDYSMPLVTFGLDDQEFGVATIDGTEWLVD---NSKPVLPTQDLT 263

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   V NALV+  L   +GID +  LE L+  + +  R + V        +    A  
Sbjct: 264 LVGRHNVANALVSLALLKQVGIDYSKSLEALKAYNGLTHRCQVVADKRSIKWVNDSKATN 323

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S    L           ++V G G   D  +   +      +             ED 
Sbjct: 324 VASTLAALS-GLEYQGTLYLLVGGVGKGADFSELEPVLSQLERVQLCCF-------GED- 374

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               A+ +   P         + I +  + L   D++++
Sbjct: 375 ---AAQFMPLHPSAKTFDTMRDIIESVSKQLVAGDMVML 410


>gi|269468137|gb|EEZ79844.1| UDP-N-acetylmuramate-alanine ligase [uncultured SUP05 cluster
           bacterium]
          Length = 432

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 102/306 (33%), Gaps = 33/306 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H + +LA++GT GK++ AS +  I + +G +  F IG    + +F   +RLT  S  ++ 
Sbjct: 100 HNKWVLAISGTHGKTTTASMLSWILECAGYNPSFLIG--GVVENFGVSSRLTD-SNFFVI 156

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  Y ++                               NL  DH D   +         
Sbjct: 157 EADEYDTAFFDKRSKFIHYH------------PKTLVINNLEFDHADIFDSLSDIQKQFH 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L    +P +   I   D     EV+++           G       L            
Sbjct: 205 HLI-RTIPSDGLIIHPKDTQAINEVLEQ-----------GLWSSDQTLPAQKLNTTDIGS 252

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +EG      + L GE  + N L A      IGI   +  E L     V  R E +  
Sbjct: 253 SFEIEG--AMVNWHLLGEHNMQNGLGAIYAAHHIGIPFDVACEALNTFKGVKRRLE-IKH 309

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDL 409
            +    +Y D+AH   +++  L  +R       IV            G        AL  
Sbjct: 310 QTNAVTLYDDFAHHPTAIKTTLSGLRAKVGNENIVAILELRSNTMKSGVHQQSLVDALKD 369

Query: 410 ADIAIV 415
           A+  ++
Sbjct: 370 ANQVLI 375


>gi|213419637|ref|ZP_03352703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 303

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 99/300 (33%), Gaps = 17/300 (5%)

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L          + + A+  G     +   +  A    NL   H++   +      AK  
Sbjct: 9   LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 68

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           ++  L P+   AI+ AD+           +      S            +    +  + T
Sbjct: 69  IYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFT 127

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       D L PLPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +
Sbjct: 128 LQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLS 187

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDL 409
                +   Y     S+   ++ +  +   R++VV      G + +     +        
Sbjct: 188 ENQLVLDDAYNANVGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAG 247

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ--DVLVVAG 466
            D  + T             +++I    G  E   ++   I     +L +Q    ++V G
Sbjct: 248 IDRVLSTGK----------LSQVISHASGVGEHFADKAALIARLHALLQEQPMMTILVKG 297


>gi|301057830|ref|ZP_07198899.1| bifunctional protein FolC [delta proteobacterium NaphS2]
 gi|300448141|gb|EFK11837.1| bifunctional protein FolC [delta proteobacterium NaphS2]
          Length = 427

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 143/401 (35%), Gaps = 52/401 (12%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS----TI 153
           T   L  F +   G   +N + + GT+GK SVA+FV  I Q +G              T 
Sbjct: 25  TENLLEAFGNPHMG---QNYIHIAGTNGKGSVATFVGSILQEAGYRVGTYVSPHLVRFTE 81

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---------------- 197
                   +T      L + L  +          EA +     +                
Sbjct: 82  RFRINGEEITEGKTTELIEDLRRVFDAHEPPTFFEAVTAMAILYFAREKTDIAIMEVGMG 141

Query: 198 -RLDG---IKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            RLD    I  +    TN+  +H +Y           K  + ++ +   +          
Sbjct: 142 GRLDATNVITPLVTGITNISMEHQEYLGNRLSQIALEKAGVIKKGIDVVTAVTQPEIVEQ 201

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K V ++      RV      GK +  + + +  +     + ++         L G  Q 
Sbjct: 202 LKSVAEQRGAPFFRV------GKDVRYRSIPSGLHYFGQQLHIKN----LQLGLGGIHQA 251

Query: 313 YNALVAAGLCIAI---GI--DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            NA +A G+   +   G   D+  V E L+K    PGR + V  N     I +D AH + 
Sbjct: 252 RNAALALGMLERLATKGFSQDADNVREGLKK-STWPGRMQIVKEN---PTILLDGAHNAG 307

Query: 368 SLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDP 425
           ++  + K + R  +  ++I+V G   D+D    P + +  + ++D  + T     R+ DP
Sbjct: 308 AMRALAKTVLRDFSYEKMILVIGIMADKD---IPALLRAIVPMSDRVLYTRPVYSRAADP 364

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  +            +  EA+  A  +   +D++VV G
Sbjct: 365 RVLMEKAGSFNTPGEIVFHLSEALEKAEAIAGPKDLIVVCG 405


>gi|114562573|ref|YP_750086.1| FolC bifunctional protein [Shewanella frigidimarina NCIMB 400]
 gi|114333866|gb|ABI71248.1| FolC bifunctional protein [Shewanella frigidimarina NCIMB 400]
          Length = 425

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 144/388 (37%), Gaps = 60/388 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS------- 166
           P  ++ V GT+GK +  + +  I +++GLS   +G  S+      + R+           
Sbjct: 52  PAKVITVAGTNGKGTTCAMLASILRQAGLS---VGVYSSPHLLHYNERVQINQQDASDDA 108

Query: 167 -----------------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG---IKLIA 206
                              +    L+ L       V V     GL   RLD    I   A
Sbjct: 109 LIEAFCAIEAARGDISLTFFEYATLAGLYLFKAAKVDVIILEVGLG-GRLDATNIIDSTA 167

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH +Y   T++     K  +F           I  +      + + A+    
Sbjct: 168 TILTSIDLDHQEYLGDTRELVGREKAGVFR-----PDCVAIIGEPDLPLSITEYANQLHT 222

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +  VG++  +   +   A+ + +    S  G              + NA     L   I
Sbjct: 223 TLYRVGHEFNYHKNQTQPALWHFESARQSYTGLTV-------PRLPLANAASVVALLSHI 275

Query: 326 --GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              I    + + L++  +  GR E V   S+   + +D AH  +++  + + ++     R
Sbjct: 276 WPQISQQHINQGLQQAQLA-GRLEQV---SQQPLVLLDVAHNPHAVRYLAQQLQAYQGRR 331

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-----IHGIPG 438
           I+ +  CG  +D+  + ++  +A  ++   +V+ DNPR    + +R  +        +  
Sbjct: 332 IVAL--CGMLKDKDIKSVLATLAEQISHWNLVSLDNPRGASAQALRQALPNDGSCEHVSE 389

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           F +  +  +AI+  +   N  DV++V G
Sbjct: 390 FADIASAWQAIQATV---NADDVVIVFG 414


>gi|167756854|ref|ZP_02428981.1| hypothetical protein CLORAM_02403 [Clostridium ramosum DSM 1402]
 gi|237734564|ref|ZP_04565045.1| UDP-N-acetylmuramate-L-alanine ligase [Mollicutes bacterium D7]
 gi|167703029|gb|EDS17608.1| hypothetical protein CLORAM_02403 [Clostridium ramosum DSM 1402]
 gi|229382384|gb|EEO32475.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. D7]
          Length = 436

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 95/267 (35%), Gaps = 19/267 (7%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+  DH+DY    + Y  +  +   ++   +   I++ DD   K++     N 
Sbjct: 162 PKYAIINNIELDHVDYFGNLERYIESFEKFANQV---KDTVIVWGDDPNIKKI-----NF 213

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
             RV+  G      +    V    N     + +  + F  F  P  G   +YN+L    L
Sbjct: 214 KKRVMRFGLNDYNDVRAVNVLENSNGLSFDVYIHNELFGHFNLPYFGMHMLYNSLAIITL 273

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TIT 380
                + +  +   +        R+      +       DYAH   +++ +++  R    
Sbjct: 274 GYLENMTNDYIQNRMATFEGTKRRYSVTEVGNN--VYVDDYAHHPTAIKYVIEATRVRYP 331

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI-RAEIIHGIP 437
           S +I+ +F         +  +    ++DLAD        +N   E+   I   +I + +P
Sbjct: 332 SKKIVAIFKPDRFSRGARFAVDFAKSMDLADYPYFCPFPENAVKEEGIDIDIYDIANNLP 391

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                G   EA   A E+    +V+ +
Sbjct: 392 RAKVIGEDEEA---AKELAKFDNVVFL 415


>gi|148651861|ref|YP_001278954.1| UDP-N-acetylmuramate [Psychrobacter sp. PRwf-1]
 gi|148570945|gb|ABQ93004.1| UDP-N-acetylmuramate [Psychrobacter sp. PRwf-1]
          Length = 503

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 104/332 (31%), Gaps = 31/332 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLA 171
              ++LAV GT GK++  + +  +    G+ +   IG    + S   +         YL 
Sbjct: 101 QHRHVLAVAGTHGKTTTTTMLAWVLHYCGIDAGFLIGGVPLVESENDNLTKAFAHSSYLG 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              +    +G   +  +         R   +  +       NL  DH D  +   A    
Sbjct: 161 ADKNAQGGRGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFKDLDAI-QT 219

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRA---HNAGCRVLSVGYQGKFIHLKKVCAIH 286
           +      ++P     I+ A     +  + +         ++ + G Q K    K V    
Sbjct: 220 QFHHMIRMIPSSGQIIMPAHTPSLEATIDKGCWTPIWRTQIANNGQQDKSAQDKAVQDDS 279

Query: 287 NKQQVTISVEGKD---------------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              Q  +  E                   +  + + G   V NA+VA      IGI  A 
Sbjct: 280 IAWQAELISEDGSQFAIHFTNTQGDILSGEVHWGMSGRHNVENAMVAVAAAYDIGISVAD 339

Query: 332 VLEHLEKLHVVPGRFEFVGT-------NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
               L +   +  R E +         ++ G +++ D+AH   ++   L   +    G  
Sbjct: 340 ACAALSQFSGIKRRMELIAELGAAESGSNFGVKVFDDFAHHPTAITTTLDGAKKKLKGAK 399

Query: 385 I--VVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           I  ++         G        +  LAD  I
Sbjct: 400 IWAIIEPRSNTMKLGVHKDNLAASAQLADEVI 431


>gi|330883892|gb|EGH18041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 106

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P PI +   L+ L   G   V++E SSHGLDQ R   +       TNL RDH+DYH T +
Sbjct: 2   PDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALAFDVAVLTNLSRDHLDYHGTME 61

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           AY  AK +LF          +I  DDA+ +E+      +     S
Sbjct: 62  AYAAAKAKLFA--WSNLKCRVINLDDAFGRELAGIKQESRLITYS 104


>gi|113869228|ref|YP_727717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           eutropha H16]
 gi|113528004|emb|CAJ94349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ralstonia eutropha
           H16]
          Length = 503

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 111/307 (36%), Gaps = 39/307 (12%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L+      +   A +  N+ +DH+D+H + +AY  +K R+F      E 
Sbjct: 176 EVWVLELSSFQLE--TTHTLAPAAATVLNVTQDHLDWHGSMEAYAASKARIF-GPAGSEC 232

Query: 243 PAIIYADDAYSKEVMK----------------------RAHNAGCRVLSV---GYQGKFI 277
             ++  +D  + ++ +                      R       VL+      +G+  
Sbjct: 233 VQVLNRNDRLTMDMARPGSTPLTFGTDLPETPGSFGILREGGMPWLVLAEPDPDAEGEGK 292

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             ++  A   ++ V +  +         + G     NA+ A  LC AI +    +L  L 
Sbjct: 293 PRRRKAAEVAREAVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDLPMNALLHGLR 352

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +    P R E+V T       Y D +  +N +   +  +  +     +V+   G  + Q 
Sbjct: 353 EYRGEPHRVEWVATIDDVE--YFDDSKGTN-VGATVAALSGLDK--RVVLIAGGEGKGQD 407

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             P+   +A     + ++           ++R  +       ++ G   EA+  A  +  
Sbjct: 408 FSPLAAPVAQYARAVVLI------GRAAGELRDALQGSGASLVDAGTLEEAVTKAAGLAE 461

Query: 458 KQDVLVV 464
             DV+++
Sbjct: 462 SGDVVLL 468


>gi|325479251|gb|EGC82347.1| bifunctional protein FolC [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 422

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 132/407 (32%), Gaps = 70/407 (17%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-------ISSF 156
           L A     +    ++ + GT+GK S A+ +     R         P  T       I+  
Sbjct: 29  LLAGFDNPQDKIKVIHIAGTNGKGSTANMIANTLSRKNKVGLFTSPYMTKINEAISINGA 88

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQG---------------------VTHVSVEASSHGLD 195
              +         L   +  L  +G                     V    VE    G  
Sbjct: 89  DISDEDFMNIIDRLKGPIEELDKKGYHNSYFEVLTAIMYIYFYEKNVDVAVVEVGLGGSL 148

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                    +A   T + +DHI     +     N K      ++   S   +Y  +   +
Sbjct: 149 DSTNIIKNPLAAVITTISKDHIQILGNSLVEIANNKA----GIIKNNSQVFLYPKEGEVR 204

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFP 305
           +V               +  K            K ++ I   G D          +    
Sbjct: 205 KV---------------FYDKAEETSSQIHAFFKDEIDIIKNGPDLNEFSFRSYKNIRTN 249

Query: 306 LPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           L G  Q+YNA  A  +         +    + + + +     GR + + TN R   I VD
Sbjct: 250 LIGNHQIYNAATALMVIDFFKDKFNLTDEDIYKGMLEAKNP-GRLQLISTNPR---ILVD 305

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DN 419
            +H   +++ +  +I+     ++IV F    D+D             +AD  +VT+  +N
Sbjct: 306 GSHNKEAIDALASSIKNYNYDKLIVGFSILEDKDYTYVIDK---LTSIADEIVVTEITEN 362

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           PR+ + +K+ + +   +P  I   + IEA        N+ D++V  G
Sbjct: 363 PRAFELDKLYSLVKSKLPNTISIKDNIEAFEYTKNTANENDLVVWCG 409


>gi|256960177|ref|ZP_05564348.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Merz96]
 gi|293382542|ref|ZP_06628476.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis R712]
 gi|293387857|ref|ZP_06632396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis S613]
 gi|312906855|ref|ZP_07765852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 512]
 gi|312978890|ref|ZP_07790616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 516]
 gi|256950673|gb|EEU67305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Merz96]
 gi|291080090|gb|EFE17454.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis R712]
 gi|291082704|gb|EFE19667.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis S613]
 gi|310627109|gb|EFQ10392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 512]
 gi|311288327|gb|EFQ66883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 516]
          Length = 456

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGFE----NQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|294789540|ref|ZP_06754775.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Simonsiella muelleri ATCC 29453]
 gi|294482477|gb|EFG30169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Simonsiella muelleri ATCC 29453]
          Length = 456

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 110/371 (29%), Gaps = 42/371 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +L V GT GK++ AS +  + + +G      G    I    Q+  +   S      
Sbjct: 108 QKMWVLGVAGTHGKTTTASMLAWVLEYAGY-----GAGFLIGGVPQNFSV---SARLPQN 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             ++   +   + +          H     +       NL  DH D      A    +  
Sbjct: 160 DSAFFVIEADEYDTAFFDKRSKFVHY----RPRTTILNNLEYDHADIFPDLAAI-QTQFH 214

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P +   I         E + +       +   G Q  +    ++     +    
Sbjct: 215 HLIRTVPNQGLIIASGRAEAIHETIDK--GCWTPIEWFGNQAGW----QIGEADKQGSFD 268

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+      + L GE    NAL        +G+      + L +   V  R E  G 
Sbjct: 269 VFFKGEKVGRVQWELLGEHNRLNALAVIAAARHVGVSVQAACDALSQFKNVKRRMEIKGV 328

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ----GKRPIMGKIAL 407
            ++   +Y D+AH   ++E  +  +R       I+               K  + G +  
Sbjct: 329 VNQ-ITVYDDFAHHPTAIETTIAGLRQKVGNARIIAVLEPRSNTMKLGTMKAALSGSLKE 387

Query: 408 DLADIAI---VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A       V  D   + +P   +  I      F+ +           +     D +++
Sbjct: 388 ANAVFCYAGGVDWDVQAALEPLGDKLHIGKQFDEFVNE---------LAKFAQTGDHILI 438

Query: 465 AGKG-----HE 470
              G     HE
Sbjct: 439 MSNGGFGGIHE 449


>gi|327534579|gb|AEA93413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis OG1RF]
          Length = 456

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +   ++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTADDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|190892585|ref|YP_001979127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhizobium etli
           CIAT 652]
 gi|190697864|gb|ACE91949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CIAT 652]
          Length = 470

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 110/290 (37%), Gaps = 35/290 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++  +     + +V +   F+     R         +A+TGT+GKS+  + +  I
Sbjct: 79  HPKPHWTVDLARAAGVDIVGDVELFVRE---RRAHAPDCPFIAITGTNGKSTTTALIAHI 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G  +   G   T                     L+    +   +  VE SS+ +D 
Sbjct: 136 LRSAGYDTQLGGNIGT-------------------AVLTLDPPKAERYYVVECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   NL  DH+D H T Q Y + K RL          A++  DD++S  +
Sbjct: 177 A--PTLNPSAGILLNLTPDHLDRHGTMQHYADVKERLVAG----SDVAVVGIDDSHSALI 230

Query: 257 MKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             R   AG +++ +  +      I+ +    +       +     D D +  L G     
Sbjct: 231 ADRVQRAGVKMVRISRRNVVADGIYAEGTKLVQAAGGAML--PFADLDGIQTLRGSHNAQ 288

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           NA  A   C+A+G+ +  +   L     +  R + VG   RG  ++V+ +
Sbjct: 289 NAAAAVAACLAVGVSADDIRAGLASFPGLKHRMQPVG--RRGRVVFVNDS 336


>gi|226942950|ref|YP_002798023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Azotobacter vinelandii DJ]
 gi|226717877|gb|ACO77048.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Azotobacter vinelandii DJ]
          Length = 450

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 124/410 (30%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++  
Sbjct: 65  VVIGNALSRGNPAVEYVLNQGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + +++G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEQAGMSPGFL-----IGGVPQNFGVS-----------ARLGGSDFFVVEADEY 162

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P +   +   
Sbjct: 163 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLV-RTIPSQGLIVYPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLP 307
            +   + ++  A      V + G  G++     V       +  +  EG       + L 
Sbjct: 222 TEEAIERML--AMGRWTPVQTTGEGGQWQARLLVED---GSRFEVRFEGAPQGVVDWELS 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A      +G+ +   +  L     V  R E V    RG  +Y D+AH   
Sbjct: 277 GRHNVANALAALAAARHVGVAAEQGIAALGGFRNVKRRMEKV-AEVRGVTLYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R       I+            G        A+  AD  +      +  D 
Sbjct: 336 AIATTLDGLRKRVGEAPIIAVIEPRSNSMKLGAHRDGLPGAVAQADQVVWYAPPNLGWD- 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     A      P        +EA I   +        +V+   G
Sbjct: 395 ---------LAATAAACPVPAVVCESLEAIIARVVSQAAPGTQVVIMSNG 435


>gi|284040361|ref|YP_003390291.1| Mur ligase middle domain protein [Spirosoma linguale DSM 74]
 gi|283819654|gb|ADB41492.1| Mur ligase middle domain protein [Spirosoma linguale DSM 74]
          Length = 453

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 115/323 (35%), Gaps = 29/323 (8%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 +  + + G+ GK+++ + +  + +     +F       I  F    +LT  +P+
Sbjct: 99  YQQSQQKQRIVIAGSHGKTTITAMILHVLKFH-NRNFDYLVGEQIDGFETMAKLTPDAPV 157

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            + +   Y             SS    Q +    +      + +  DH++ + T   Y +
Sbjct: 158 IILEGDEY------------PSSPIDAQPKFLHYQPHIALISGIAWDHVNIYPTWDEYVD 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A   L  E +PK    I    D     + ++      ++  + +    +  K +      
Sbjct: 206 A-FELLAEAMPKAGILIFDESDDMLDVIGQKERADITKIPYLPHPATTVEGKTILVTKKG 264

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +V + V G+             + N   A  +C  IGI      E L     V  R E 
Sbjct: 265 ARVPVQVFGQ-----------HNLKNIAGAMTVCDRIGITEEQFYEALPTFKPVAMRLEK 313

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI-MGKIA 406
           V     G  +Y D+AH+   +E   + ++   TS +++ V          K  +   +  
Sbjct: 314 VAEKG-GRVLYRDFAHSPAKVEATTEAVKHQYTSRKVVAVVELSTFSSLNKAFLDQYEGT 372

Query: 407 LDLADI-AIVTDDNPRSEDPEKI 428
           LD AD+  +  D+N    +PE I
Sbjct: 373 LDAADVGVVYFDENASDRNPEAI 395


>gi|148980586|ref|ZP_01816133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
 gi|145961169|gb|EDK26485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
          Length = 438

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 116/334 (34%), Gaps = 52/334 (15%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V +   +L   +    +++ TP  VV +              K    ++A+TG++G
Sbjct: 69  ADLVVANPGIALATPEIQDVLQAGTP--VVGDI-----ELFGWAVDKP---VVAITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V      + + +GL+   +G    I   A D          L               
Sbjct: 119 KSTVTDLTGVLAKAAGLN---VGVGGNIGIPALDLLELDADLYVL--------------- 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+F          I
Sbjct: 161 --ELSSFQLE--TTSNLKLAAAAFLNLSEDHMDRYQGMTDYREAKLRIF----NNAQCTI 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-- 303
           +  +D       +   +    +++ G   +   +  +          +   GK       
Sbjct: 213 VNREDK------ETYPDQTMPLVTFGLDNQEFGVSTIGGCEW-----LVDNGKPVLTTQD 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V NALV+  L   +GID    LE L+  + +  R + V        +    A
Sbjct: 262 LTLVGRHNVANALVSLALLKQVGIDYNKSLEALKAYNGLTHRCQVVADKREIKWVNDSKA 321

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               S    L           ++V G G   D  
Sbjct: 322 TNVASTLAALS-GLEYQGTLYLLVGGVGKGADFS 354


>gi|297623832|ref|YP_003705266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera
           radiovictrix DSM 17093]
 gi|297165012|gb|ADI14723.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera
           radiovictrix DSM 17093]
          Length = 450

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 111/328 (33%), Gaps = 48/328 (14%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS---------RLYG 111
               A G  A   S+   +           P     +     +L A           +Y 
Sbjct: 37  EDLAALGCRA--TSAPLEVPAELCIAAPGVPW----DAPDLAALRARGVETIGEVEWVYR 90

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                IL +TGT+GK++V  ++      +GL +                    P+   + 
Sbjct: 91  TVDAPILGITGTAGKTTVTRWLSHTLTLAGLDA--------------------PAGGNVD 130

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            AL+ +++ G   +  E SS  L+  R   +        NLGRDH+D H +  AY  AK 
Sbjct: 131 PALAAVAAPG-RVLVTELSSFQLE--RCPSLHPRVAVVLNLGRDHLDRHGSLAAYHAAKK 187

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           RL   L P+++      DD   +   + +        +    G   HL           +
Sbjct: 188 RLIAHLTPEDTFVY-NHDDPLVRAWAEASPARTWGFSAAPTPGSAAHLAD-------GML 239

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+            L G+    NAL  A    A G+    +   LE    VPGR+  VG 
Sbjct: 240 TLHGRPLVAVRALQLTGQHHRLNALAVALAAAAWGLGDEAIRAGLESFSGVPGRYSVVGE 299

Query: 352 NSRGGRIYVDYAHTSN-SLEMILKNIRT 378
            + G R   D   T   +++  L     
Sbjct: 300 VA-GVRFVEDSIATRTLAVQAALAATPA 326


>gi|227550538|ref|ZP_03980587.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257888564|ref|ZP_05668217.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257897060|ref|ZP_05676713.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|227180439|gb|EEI61411.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257824618|gb|EEV51550.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833625|gb|EEV60046.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 511

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 134/346 (38%), Gaps = 34/346 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV          +      TP  +V+++ KFL   +++L       ++A+TG++GK+S 
Sbjct: 96  VIVTEKPIMDPSVT------TPQFIVEDSWKFLLELSAKLRSCFVNPVVAITGSAGKTST 149

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSV 187
              +  + Q              +     ++ +    P+Y++K LS   + +  V+  ++
Sbjct: 150 RMMITHLLQE-----------EKVLENRGNHNVRFAVPLYMSKLLSNPDVLNLEVSVNAL 198

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            +   G   +    I+      T++G  H+   +  +     K ++FE L  ++  AII 
Sbjct: 199 NSYDTGSMSNL---IQQDIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGL-KQDGIAIIN 254

Query: 248 AD---DAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            D   + +S  V       +   V S+    + + +K++       +V +S  G+D    
Sbjct: 255 GDIGKEEFSILVSAAEKRTSKIVVYSLHDASRDVFVKQISQKREYCEVLVSFFGEDILLK 314

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVD 361
             +  E  + N+L A  +   +  + +  ++  E    +P   E     S  G    ++D
Sbjct: 315 LAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFTFID 374

Query: 362 YAHTSN--SLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             H ++  S++        I+    G  +++ G   D     + I 
Sbjct: 375 DTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIADLGDSTKQIH 420


>gi|189220257|ref|YP_001940897.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
           infernorum V4]
 gi|189187115|gb|ACD84300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
           infernorum V4]
          Length = 442

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 100/302 (33%), Gaps = 50/302 (16%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A       P   + VTG+ GKS+ +S +  + +  G  ++  G    I            
Sbjct: 104 ADIFLSFWPGKTVGVTGSKGKSTTSSLIYHLLKEGGFKAYLGG---NIGIPPFHLLPFAD 160

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                   LS    +   H                        + NL  +H++YH + +A
Sbjct: 161 EKAIAVLELSSYQLEYCKH------------------SPAIALWLNLFHEHLNYHGSFEA 202

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y  AK  +     PK+       D A    ++ +    G  +   G              
Sbjct: 203 YAQAKSHIGRFQSPKDYFIYDPGDQALELFLLSQEKMPGIPLPVEG-------------- 248

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             + QV +S           +PG     NAL AA + + +G+ +  + E L     +P R
Sbjct: 249 KGRSQVDLS--------RLGIPGRHNKKNALFAARVALLLGMPAEAISEALSSFRGLPHR 300

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E+V T          Y  + +++ E  L  I  I S R ++V   G DR         +
Sbjct: 301 LEYVATVGG----ISYYNDSISTVPEATLAGIEAIPSVRTLIV--GGQDRGVDLGLFCAR 354

Query: 405 IA 406
           + 
Sbjct: 355 LC 356


>gi|168204898|ref|ZP_02630903.1| FolC bifunctional protein [Clostridium perfringens E str. JGS1987]
 gi|170663533|gb|EDT16216.1| FolC bifunctional protein [Clostridium perfringens E str. JGS1987]
          Length = 441

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 142/386 (36%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S  + +  + + +G                   I+    +        
Sbjct: 41  KFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENINKDDLAVLM 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLDG---IKLIA 206
             + KA+  +   G    +       L  +                  RLD    +    
Sbjct: 101 GDVKKAIDKVMKLGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGGRLDATNVVIPEV 160

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    T +     K  + +  +P     I Y  +  + EV+K   N   
Sbjct: 161 VVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVP----VISYPQEEKALEVIKERCNELG 216

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L V    + I    +    + Q++ +S+E +  +    L G+ QV N LVA    I +
Sbjct: 217 CNLEV-VNTEDIKNIIIDKEKHVQKIEVSLEDEILEIDLGLLGDHQVKNFLVALKTLIKL 275

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                 I +  + E  +K+  + GR E +  N     + +D AH  + +  +  +I    
Sbjct: 276 RNNGVNISNESIKEGFKKVRWI-GRMEVLNEN---PLVVIDGAHNIDGIRSLRNSIDKYF 331

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           + + I +   G   D+    ++ +I   +  + IV   + R+ED E++  ++   +    
Sbjct: 332 NFKNITLIL-GVLGDKQVDEMVEEITRGVDKVVIVEPHSDRAEDIEELYIKVKKYVKEVF 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +  +A   A  + N+ D+L++ G
Sbjct: 391 KFKDYKDAYNKAYSLTNRDDLLLICG 416


>gi|307544777|ref|YP_003897256.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Halomonas elongata DSM 2581]
 gi|307216801|emb|CBV42071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Halomonas elongata DSM 2581]
          Length = 456

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 124/405 (30%), Gaps = 30/405 (7%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  +       +  +  V          A  +       ++AV GT GK++ A
Sbjct: 65  VVVGNALSRGNPEVEALLDLGLPYVSGP----QWLAEHVL--PGRRVIAVAGTHGKTTTA 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  + + +GL+   +       +F    RL      ++ +A  Y ++           
Sbjct: 119 SLVAWLLEAAGLAPGFL-IGGVPRNFGISARLGASDAPFVVEADEYDTAFFDKRSKFVHY 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P +   ++   +
Sbjct: 178 ------------RPEIAVLGNLEFDHADIFPDLAAIERQFHHLI-RTVPGKGKLLVADGE 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                V+++       V   G Q             +  +  +S   +     + L G +
Sbjct: 225 PALDRVLEQ--GCWTPVERFG-QSPDSDWHLTLERDDAGRFRVSHGDEQVVVDWALSGTY 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
             YNAL A     A G+  +   E L +      R E  G  + G R+  D+AH   ++ 
Sbjct: 282 NAYNALAALAAAHACGVSLSRGGEALARFETPRRRQELRGEVA-GIRVIDDFAHHPTAIA 340

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +R       ++              +  ++A  +A   +     P   D   +  
Sbjct: 341 ATLDGLRATDGQGRLLAVIEPRSNTMRLGALRERLAASVASADLAYWYQPAELD-WALAP 399

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HE 470
            I           +    +   +      D +VV   G     HE
Sbjct: 400 VIEAATTPSRAYDDLDTLVAALVAEARAGDRIVVMSNGGFGGIHE 444


>gi|254993143|ref|ZP_05275333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J2-064]
          Length = 416

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 98/267 (36%), Gaps = 25/267 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQLM--GVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT-ADD 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +I  D    K + K+         +    G+  +++          +  + E      
Sbjct: 220 FLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQN-------GNIMFNDEVIGARD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV    +G + Y D 
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFV-VEWQGRKFYNDS 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+  +      ++   +   +V+   G DR      ++       A I          
Sbjct: 332 KATN--ILATQSALKGFKNP--VVLLAGGLDRGNSFDELLPFFKNVKALIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEA 448
           E  +KI R   I GI   +   + +EA
Sbjct: 381 ETADKIGRVGKIAGID--VHYVDNVEA 405


>gi|291530453|emb|CBK96038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           siraeum 70/3]
          Length = 438

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 115/336 (34%), Gaps = 44/336 (13%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT GKS+ +S ++   ++SG  +  IG         ++                 
Sbjct: 109 IIGITGTKGKSTTSSLIKFFIEKSGKDTMLIGNIGVPPLERREEFTKDC----------- 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   +  E S H L+  +            N+  +H+D++    AY NAK+ +F  
Sbjct: 158 -------VIVCEMSCHQLEYVKAS---PDVAVLLNIYPEHLDHYTDFAAYRNAKLNIFR- 206

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                       D     E +K+  +   RV++ G+    I  +        +     V 
Sbjct: 207 -------YQNENDTLIIGEEVKQYADTKARVITAGFSCGDIGTRNGGIFIGDEFYPADV- 258

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L GE  +YN  +A       G      L+ L + + +  R E+V   +   
Sbjct: 259 -----IDTKLKGEHNLYNIAIAIYAATKAGCTVKQCLDALPQFNGLEHRLEYVCMLNGAE 313

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I    +    +    LK     T   II     G   D+    + G  ++   ++ I+ 
Sbjct: 314 YINDSISTAPQTAIAALKA-YPDTDTLIIGGMDRGIPYDELSDWLSGDTSVR--NLIILP 370

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D   R      +  ++ + +   I   +  +A++ A
Sbjct: 371 DSGKR------VAEKVTNPLVKLIYADDMEQAVKYA 400


>gi|319407505|emb|CBI81153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella sp.
           1-1C]
          Length = 468

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 141/391 (36%), Gaps = 51/391 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +       +A+TGT+GKS+  + +  + ++ G      G   T                 
Sbjct: 116 FDDQDVPFIAITGTNGKSTTTALLAHLLEKMGYDVQMGGNIGT----------------- 158

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               L+           +E SS  ++      ++   G   NL  DHID H + + Y   
Sbjct: 159 --AILTLKPFVKKRIYVIECSSFQIELA--PSLQPTVGLLLNLTPDHIDRHGSFERYVQV 214

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCA 284
           K    E ++ + S A+I  D      + ++  + G  +  V  +     G ++   K+ A
Sbjct: 215 K----ERVVSRASRALISIDSLVCCALYQKLFSEGYSIDPVSKEHVVKNGFYVEGTKLFA 270

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           I++ Q   ++    D   +  L G     NAL+A      + I +  + EHL     +  
Sbjct: 271 IYHGQHHMLA----DLANITSLRGSHNAENALMALATLQILKITTLDIEEHLASYLGLAH 326

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + V     G  ++++ +  +N+ E  +  + T  +   IV    G +++ G   + G 
Sbjct: 327 RMQQVC--KIGSILFINDSKATNA-ESSVPALTTFNNIFWIV---GGQEKEGGIDALKGF 380

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---DV 461
                    I       +E+  +I   I    P F    N   A+R A     +    + 
Sbjct: 381 FYKIRKAYLI----GSAAENFARI---IGSAFP-FSMSLNLENAVREAASDAARDMEKEA 432

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +V+      +     N E +      ++ ++
Sbjct: 433 VVLFSPACASYDQFKNYEVRGETFVSLVMQL 463


>gi|332982069|ref|YP_004463510.1| FolC bifunctional protein [Mahella australiensis 50-1 BON]
 gi|332699747|gb|AEE96688.1| FolC bifunctional protein [Mahella australiensis 50-1 BON]
          Length = 433

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 135/409 (33%), Gaps = 54/409 (13%)

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +N    L L      G     +  + + GT+GK SV      I +++G  +         
Sbjct: 23  ENISYLLQLL-----GNPHRKLRCIHIAGTNGKGSVTVMTASILEKAGYKTGLFISPYLE 77

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--------------------- 192
               +        P      L+ +  Q V  +  E   H                     
Sbjct: 78  DFRERIQINQNYIPKDDLARLTDVVKQKVEQMLAEGRPHPTEFEVVTAIGFCYFAEQNVD 137

Query: 193 --------GLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESP 243
                   G      + I  +    T++  DH D    T       K      ++    P
Sbjct: 138 YAVIEVGLGGRLDSTNVIDPLVSVITSIDYDHKDILGDTLAKIAYEKA----GIIKPGRP 193

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++Y       E M        +  S   +  +  ++ +    + Q    + EGK     
Sbjct: 194 VVVY---PQQDEAMDVIKQVCQQRQSPLIEVSYSDIEAIDDSIDGQHFNYN-EGKWTFNR 249

Query: 304 FPLP--GEFQVYNALVAAGLCIAIG--IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +P  G+ Q+ NA  A    + +   +  A+  + + +   V      +    R   + 
Sbjct: 250 LYIPLLGKHQLMNAATAITAVLVLRKYMGVAISDKAIAEGLSVTKWPGRLELVHRQPYVL 309

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-D 417
           +D AH     + +   I+      R+I+V G   D+D        ++ + LA   I T  
Sbjct: 310 LDGAHNPQGAQSLANAIKNYFPHNRVIMVLGILADKDVRAIL---EVLVPLAAYIITTRP 366

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+PR+ + E++   +           N   A++T+++M    D++V++G
Sbjct: 367 DSPRAIEAERLLTLVKEMNVQGQAIDNIEFAVQTSLDMAEPDDLVVISG 415


>gi|62185436|ref|YP_220221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           abortus S26/3]
 gi|81174946|sp|Q5L521|MURD_CHLAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62148503|emb|CAH64274.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila abortus S26/3]
          Length = 420

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 130/395 (32%), Gaps = 70/395 (17%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            V S              +  I +V + +             H    L VTG++GK++  
Sbjct: 63  CVRSPGIKTSHPFVVEAKHRGIPIVTDIQLAFQD-----PEFHRYPSLGVTGSAGKTTTV 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F+  + +  G+S+  +G                         L  +  +G+    VE S
Sbjct: 118 LFLVHLLRSVGMSACAMGNIG-------------------FPILQAMYQKGIRV--VEIS 156

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L +  ++   L A +  N+  +H+DYH T QAY  AK  + + L   +SP  ++  D
Sbjct: 157 SFQLAEQEIEIPVLSAAAILNISENHLDYHYTLQAYTEAKSHIAKCL---QSPESLWVGD 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                            +S G             +   +++ + ++         L    
Sbjct: 214 G----------------VSFGKS----------YLEATREINLVLDKGSALKPLYL---H 244

Query: 311 QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              N      L   +  I     L+ +      P R E++G       I    A T +S+
Sbjct: 245 DRNNYCAGYALANEVTKIPLESFLQAVLTFDKPPHRIEYLGEKDGVRYINDSKATTMSSV 304

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  ++       I+V   G ++      ++  +        +   +  R+E    I 
Sbjct: 305 EKALIAVKE-----NIIVILGGRNKGSNFASLI-PVLTQTVKHVVAMGEC-RTE----IA 353

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +        +  +  EA+  A  +    DV+++
Sbjct: 354 QALSSSNLPLTQAQDLQEAVHVAQSIAQPGDVILL 388


>gi|260892211|ref|YP_003238308.1| FolC bifunctional protein [Ammonifex degensii KC4]
 gi|260864352|gb|ACX51458.1| FolC bifunctional protein [Ammonifex degensii KC4]
          Length = 426

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 126/388 (32%), Gaps = 51/388 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--------SP 167
             L V GT+GK SV +F+  I + +G            S   +      P          
Sbjct: 38  RFLHVGGTNGKGSVTAFLSSILRAAGYRVGTFTSPHLRSYLERFRLNGRPIREREFVWLV 97

Query: 168 IYLAKALSYLSSQGVTHVSVEASSH--------------------GLDQHRLDGIKLIAG 207
             L   L  L  +G+     E  +                     G      + +     
Sbjct: 98  NELYPHLEALRQEGIRLTEFEIHTALAFLLFARARVEVAVVEVGLGGRWDATNVVLPELA 157

Query: 208 SFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             TN+  DH DY  +   +    K  + +  +P  + A         + V + A   G  
Sbjct: 158 VITNVAVDHTDYLGSDITSIAREKAGIIKAGVPVVTGAT----GEALRVVEEVAREKGAP 213

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +     QG+    ++       Q + +    GK       L G  Q  NA +A      +
Sbjct: 214 LY---VQGRDFSFREKANDLTGQVIEVEGWWGKTPPLRLNLLGRHQQSNAALAVAAARLL 270

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                 ID   +   L +     GR E V +      + +D AH       + + +    
Sbjct: 271 EERGWQIDKGAIKVGLYRTRWP-GRLEIVFSQ---PTLILDGAHNPAGTAALREALDYYF 326

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPG 438
             GR ++V G   D+    R  M KI +  A + +VT    PRSED  ++        P 
Sbjct: 327 PRGRRLLVLGMCDDK---AREEMVKIIVPGASLVVVTRPPGPRSEDWRRVADWARSLCPQ 383

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   EA+  A+     +D++VV G
Sbjct: 384 VYLVEEPQEALGQALRQARPEDLVVVTG 411


>gi|281356446|ref|ZP_06242938.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317138|gb|EFB01160.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC
           BAA-548]
          Length = 511

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 112/410 (27%), Gaps = 86/410 (20%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG--PTSTISSFAQDNRLTTPSPIYLAKALS 175
           +AVTG+ GKS+V +++ +     G     +        +           +  Y      
Sbjct: 111 IAVTGSCGKSTVTAYLAEALTNLGADPSCLDGALIKRFTGGRYAGNYRHGAGKYFVFEAD 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V +                          NLG DH +         +  +R+F 
Sbjct: 171 ESDKSLVNY------------------SPDYAIILNLGCDHYE--------KDELVRVFG 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E L K     +   + Y     +       RV+    +       +   I  +     S 
Sbjct: 205 EFLAKVKKGAVLEREVYELVRPRLKPGFPVRVIDASPRPDSQFAIEEYRILTRTDAIYSQ 264

Query: 296 EGKDFDF---------------------------------------------LFPLPGEF 310
            G+                                                   P PG  
Sbjct: 265 GGRRERLAPSGDRAVTDTIGATNLLSIYGMRSEGFRLESRLPVARFTGGRKLELPQPGFH 324

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL    L   IG D A  +E LE+   V  R ++ G  + G  +Y DYAH    + 
Sbjct: 325 MAMNALAIDALLEWIGFDPAETIEALERFDGVWRRNDYAGLTASGATVYDDYAHNPEKIV 384

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKR----PIMGKIALDLADIAIVTDDNPRSE--- 423
              + +R +  G I  VF   G    G       +  +  L   D  I+           
Sbjct: 385 SCFRAMREMGDGNIYAVFQPHGYAPFGFMRDQLYLEIEPELRNNDRFILLPPYYAGGTSS 444

Query: 424 ---DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
               PE++ A+          F+   NR       +      D +V+ G 
Sbjct: 445 FRPKPEEVLADWQSRCRRPERFMYFPNRELLTDFLLLQSKPGDTIVIMGA 494


>gi|15678560|ref|NP_275675.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621606|gb|AAB85038.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 404

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 104/312 (33%), Gaps = 57/312 (18%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L    L G      +AVTGT+GK++ AS +  + + SG      G          +    
Sbjct: 79  LLCRVLRGHRVPVTVAVTGTNGKTTTASMIAHVLESSGWRVLLGGNAGGGFDGYTEV--- 135

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                     +   + +   ++ VE     L+    +   +     TNLG DH+++H + 
Sbjct: 136 ----------ILRAAEEEFDYIVVEVCDMTLEFA-SECFDIDLAVITNLGEDHLNFHGSM 184

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  +     E         +I AD+ + +E+   A +                     
Sbjct: 185 ENYRESVASFLEG-----RAVVISADEPHLEELTSGASSVMEYT---------------- 223

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                           +     L GEF   NA  AA     +G+ S ++  HL     V 
Sbjct: 224 ---------------PYRGELVLEGEFNRLNAGAAAEALEFLGVPSEVISRHLSVFRPVA 268

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR      N     +        +++  +L+      S   ++  G     ++ +  I+ 
Sbjct: 269 GRIRSFSVND--ALVVAGKTDNPHAMRALLR-----ESNFDVIFLGTPRRSEEWRLGILD 321

Query: 404 KIALDLADIAIV 415
           +IA    +I ++
Sbjct: 322 EIAESPPEILVL 333


>gi|317012551|gb|ADU83159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori Lithuania75]
          Length = 493

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 141/352 (40%), Gaps = 36/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG+ GK+S  +F+ QI Q +  +       +T+   A D          +     
Sbjct: 169 KVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEI----- 223

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A + G  +     I+        +G  H++Y +T +     K  L +
Sbjct: 224 YIAEAG-------ARNKGDIKEITRLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLD 276

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++         YS E +K        ++ V        +K + +        + +
Sbjct: 277 SKRLEKAFC-------YSVEKIKPYAPKDSPLIDVS-----SLVKNIQSTLKGTSFEMLL 324

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F   + GEF  YN   A  +   +G+++  +   + +L+ +  R + +  N + 
Sbjct: 325 DSVWESFETKVLGEFSAYNIASAILIAKHLGLETERIRRLVLELNPIAHRLQLLEVNQK- 383

Query: 356 GRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             I +D +   N L+ +L+ IR  ++  GR ++V     + +      + +    + D+A
Sbjct: 384 --IIIDDSFNGN-LKGMLEGIRLASLYEGRKVIVTPGLVESNTESNEALAQKIDGVFDVA 440

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I+T +     + + I +++       ++   ++E I  A  +  + D+++ A
Sbjct: 441 IITGE----LNSKTIASKLKTPQKILLKDKAQLENILQATTI--QGDLILFA 486


>gi|150397285|ref|YP_001327752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium
           medicae WSM419]
 gi|150028800|gb|ABR60917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sinorhizobium
           medicae WSM419]
          Length = 463

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 112/300 (37%), Gaps = 35/300 (11%)

Query: 69  EAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            A+V+S    L      +SA +  +  + ++ +   F+     R         +A+TGT+
Sbjct: 67  SALVLSPGVPLTHPKPHWSADLAHHAGVEIIGDVELFVRE---RRKHAPDCPFIAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  I + SG  +   G   T                     L+    Q    
Sbjct: 124 GKSTTTALIAHILRASGRDTQLGGNIGT-------------------AVLTLEPPQADRF 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VE SS+ +D      +   AG   NL  DH+D H T Q Y + K RL          A
Sbjct: 165 YVVECSSYQIDLA--PTLDPTAGILLNLTPDHLDRHGTMQHYADIKERLVAG----SGTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+  DD+ S  +  R   AG +V+ +  +      +        +     S    D   +
Sbjct: 219 IVGVDDSLSSLIADRVERAGTKVVRISRRHPLAEGVYAEGTALMRATGGASSLFTDLAGI 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA  A   C+A+GI    +++ L     +  R + V    +G  I+V+ +
Sbjct: 279 QTLRGGHNAQNAAAAIAACLAVGISEKDIVDGLRSFPGLKHRMQPVA--KKGETIFVNDS 336


>gi|53726123|ref|YP_104043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 23344]
 gi|67643581|ref|ZP_00442326.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei GB8 horse 4]
 gi|121598668|ref|YP_991767.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei SAVP1]
 gi|126449432|ref|YP_001082804.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10247]
 gi|251766617|ref|ZP_04819730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei PRL-20]
 gi|52429546|gb|AAU50139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 23344]
 gi|121227478|gb|ABM49996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei SAVP1]
 gi|126242302|gb|ABO05395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10247]
 gi|238524952|gb|EEP88382.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei GB8 horse 4]
 gi|243065262|gb|EES47448.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei PRL-20]
          Length = 470

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 114/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFL-----IGGVPLNFGVS-----------AQ 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    D   + V+ R       V   G  G +  L     +    +  + 
Sbjct: 208 VRTVPGVGRLVTNGRDDALERVLSR--GCWSDVERFGVDGGWQALPVENGVPVDGRFAVY 265

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 266 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +RT        I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRTRIGRENTRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     P   D       + +  + G     + + A+  A+       D ++V   G
Sbjct: 385 ADLVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVMSNG 444


>gi|295092964|emb|CBK82055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprococcus sp.
           ART55/1]
          Length = 453

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 97/296 (32%), Gaps = 24/296 (8%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L           A         +        +  NL  DH++ H T + Y N K  + 
Sbjct: 147 TELCDTTDDDSDTVAEISSFQLETVIDFHPNVSAILNLTPDHLNRHYTFENYGNVKFSIT 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +   ++  DD +++ + ++A +    V        F  L+K       +   I 
Sbjct: 207 KNQTMDD-VTVLNYDDEHTRAMGEKAKDHCHVVY-------FSRLEKPAGGVYVEDGDII 258

Query: 295 VEGKDFDFL------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +E  D            L G   V N L A G+   +G+   ++ +       V  R E+
Sbjct: 259 LEDGDKKINVLAIKDLKLMGAHNVENVLAAVGISYYMGVPVDVIRDVATSFKAVAHRIEY 318

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T    G  Y + +  +N    I      +    +I   G G D+       +      
Sbjct: 319 VDTVD--GVAYYNDSKGTNPDAAIKGIQAMVAPTFLI---GGGYDKGSEYDEWIEAFDGK 373

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  + ++     +  D  K      HG    I + N  +A+    E     D +++
Sbjct: 374 VKWLVLIGQTAQKIADCAK-----RHGFNSIIFEENLQDAVAYCHENAVDGDAVLL 424


>gi|221202432|ref|ZP_03575464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2M]
 gi|221208109|ref|ZP_03581114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2]
 gi|221172012|gb|EEE04454.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2]
 gi|221177709|gb|EEE10124.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2M]
          Length = 461

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 112/363 (30%), Gaps = 34/363 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLAPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +        + V+ R       V   G  G +  L     +   ++  + 
Sbjct: 208 VRTVPGVGRIVTNGRSDALERVLAR--GCWSEVERFGVDGGWQALPAEDGVPVDERFAVY 265

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +   +  + + GE    NAL A      +G+  A     L     V  R E  G   
Sbjct: 266 SHAERVGEVAWQVQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRMEVRG-GV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGRQNSRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              +     P   D          + +      F +    ++A+  A       D ++V 
Sbjct: 385 ADLVFGYGAPSGRDALGWNLGDALSPLGDKARAFDDLHLLVKAVAEA---ARPGDHVLVM 441

Query: 466 GKG 468
             G
Sbjct: 442 SNG 444


>gi|119504381|ref|ZP_01626461.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2080]
 gi|119459889|gb|EAW40984.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2080]
          Length = 459

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 122/370 (32%), Gaps = 42/370 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV+GT GK++  S +  I + +G++   +     + +    +     S  ++ +A 
Sbjct: 105 RWVIAVSGTHGKTTTTSMLAWILEYAGMAPGFL--VGGVPADFGLSATLGGSDFFVVEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++                       K       NL  DH D      A    +    
Sbjct: 163 EYDTAFFDKRSKFVHY------------KPRTLVIANLEYDHADIFPDLAAI-ETQFHHL 209

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P +    I+       +V  +         S G +       +  ++  +Q   +S
Sbjct: 210 VRCVPSQGLI-IHGRAPAIDQVFSK--GVWSPRQSFGTETDSQWKVRAMSLAGEQFELVS 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            EG      + L G+  + NA  A       G+   +    LE    V  R E  GT   
Sbjct: 267 PEGATEVVTWSLIGQHNLLNACAAVAAAHHAGVPLPVAARALENFSGVKRRLELRGTPG- 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT---ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
           G  I+ D+AH   ++ M L+ +R    + SGR++ V          G   +    A   A
Sbjct: 326 GIAIFDDFAHHPTAIAMTLEAMRDRIGVGSGRLLAVIEPRSATMKDGHHGVALAAATAAA 385

Query: 411 DIAIVTDDNPRSEDPEKI--RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D           E P      A ++ G  G   +      ++A+          D +VV 
Sbjct: 386 DEVF------WYEPPGLSWPLAALVAGQTGQSVWQHIDTLVDAVAV---TATAGDAVVVM 436

Query: 466 GKG-----HE 470
             G     HE
Sbjct: 437 SNGGFGGIHE 446


>gi|52425724|ref|YP_088861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mannheimia
           succiniciproducens MBEL55E]
 gi|62900506|sp|Q65RY4|MURD_MANSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52307776|gb|AAU38276.1| MurD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 439

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 138/397 (34%), Gaps = 59/397 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   S++        +  + VV +   F    A          ++A+TG++GKS+V 
Sbjct: 69  IVISPGLSVKTAEIQTALSAGVEVVGDIELFCREAAK--------PVIAITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +GLS    G                        ALS L+        +E S
Sbjct: 121 ALVTEMGKAAGLSVGMGGNIG-------------------IPALSLLNENH-DLYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH++ +   + Y  AK+ ++         A+I  +D
Sbjct: 161 SFQLE--TTYSLKATAATVLNVTEDHMNRYADLEEYRQAKLNIYHHC----QTAVINGED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLP 307
             +KE  K++       +S         LK       +  K ++ ++ +         L 
Sbjct: 215 PLTKEDDKQSAQQQ---VSFAENNADYWLKTENGKKYLMAKDKLILACD------EIKLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A GI ++ +L  L     +  RF+     +  G  +V+ +  +N
Sbjct: 266 GRHNHMNALAAIALAQAAGIKNSGILTALRTFPGLAHRFQLAHMAN--GVRWVNDSKATN 323

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
               +         G++ ++   G  +      +   I            D         
Sbjct: 324 VGSTVAALTGLHIEGKLHLLL-GGDGKGADFSELEKLINKPEIFCYCFGQDG-------- 374

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A +              +AI T    L   D++++
Sbjct: 375 --AHLAKLSSQSQLFNTMEQAIETLRPTLKPGDMVLL 409


>gi|124385257|ref|YP_001027261.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10229]
 gi|254178784|ref|ZP_04885438.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 10399]
 gi|254202762|ref|ZP_04909125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei FMH]
 gi|254208104|ref|ZP_04914454.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei JHU]
 gi|124293277|gb|ABN02546.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10229]
 gi|147747009|gb|EDK54086.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei FMH]
 gi|147751998|gb|EDK59065.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei JHU]
 gi|160694698|gb|EDP84706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 10399]
          Length = 504

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 114/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFL-----IGGVPLNFGVS-----------AQ 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 183 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 241

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    D   + V+ R       V   G  G +  L     +    +  + 
Sbjct: 242 VRTVPGVGRLVTNGRDDALERVLSR--GCWSDVERFGVDGGWQALPVENGVPVDGRFAVY 299

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 300 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 358

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +RT        I+              +  ++   LAD
Sbjct: 359 DGVTVYDDFAHHPTAIETTIAGLRTRIGRENTRILAVLEPRSNTMKLGVMKAQLPASLAD 418

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     P   D       + +  + G     + + A+  A+       D ++V   G
Sbjct: 419 ADLVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVMSNG 478


>gi|327482317|gb|AEA85627.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Pseudomonas stutzeri DSM
           4166]
          Length = 449

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 123/403 (30%), Gaps = 37/403 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     N  +  V          A  +       +LA  GT GK++ +
Sbjct: 65  VVVGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAAAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     +      +     +P ++ +A  Y S+           
Sbjct: 119 SMLAWVLEHAGMSPGFL--IGGVPQNFGISARLGGTPFFVVEADEYDSAFFDKRSKFVHY 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I    +
Sbjct: 177 ------------RPRTAILNNLEFDHADIFPDLAAIERQFHHLV-RTVPGEGLIIHPESE 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
              K V+         V + G  G++   +      +  +  +  +G+      + L G 
Sbjct: 224 TALKRVIGM--GCWTPVQTTGDGGQW---QAKLLSADGSRFEVIFDGEVQGVVEWELTGR 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L +   V  R E V     G  IY D+AH   ++
Sbjct: 279 HNVNNALATLAAARHVGVLPKQGAEALSEFRSVKRRMEKV-AEVNGVTIYDDFAHHPTAI 337

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI- 428
              L  +R       I+                  +A  +A       D      P  + 
Sbjct: 338 ATTLDGLRKRVGDTPIIAVVEPRSNSMKLGAHREGLAESVA-----LADQAIWYAPANLG 392

Query: 429 --RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
              A  + G P      + +EA I            +VV   G
Sbjct: 393 WDLAATVAGSPVPTTVCDSLEAIIAKVKADAVPGTQVVVMSNG 435


>gi|269956082|ref|YP_003325871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304763|gb|ACZ30313.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 137/415 (33%), Gaps = 45/415 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V S  +   D          + V         L   R  G  P   LAVTGT+GK++   
Sbjct: 74  VTSPGFKPSDPLLVAAGGAGVPVWSEVELAWRLRVDRAAGGGPAPWLAVTGTNGKTTTVE 133

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I   +GL +  +G   T                     +       +  ++VE SS
Sbjct: 134 MLASILSAAGLRTRAVGNVGT-------------------PLIEAALDPDLDVLAVELSS 174

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L  H    + + AG+  NL  DH+D+H T  AY   K R++E    + +     AD A
Sbjct: 175 FQL--HFAHTVAVQAGAILNLAEDHLDWHGTMAAYGADKGRIYER--AERACVYNAADGA 230

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-----------HNKQQVTISVEGKDF 300
              EV +     G R +          +  V                  ++T + E    
Sbjct: 231 TEHEVREADVADGARAVGFTLGAPAPGMLGVVEDVLVDRAFHAPADAVDRLTYAAELGTL 290

Query: 301 DFLFPL-----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             L  L          V NAL AA L  A G+ +A V + L        R + V   +  
Sbjct: 291 ADLEHLAPGGSLPPHVVANALAAAALARAHGVPAAAVRDGLRAFTPGGHRIQQVA--ALD 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAI 414
           G  YV+ +  +N+               + V    G  +      ++   A    A + I
Sbjct: 349 GVTYVNDSKATNAHSAAASLAGFPAGSVVWV--AGGLAKGARFDELVEDRADRLRAAVVI 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKG 468
             D  P +    +   ++   +    + G     A+  A  +    D +++A  G
Sbjct: 407 GVDPGPFTAALGRHAPDVPVVVVDPGDTGTVMRRAVAAARSLAQPGDTVLLAPAG 461


>gi|328675678|gb|AEB28353.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Francisella cf. novicida
           3523]
          Length = 456

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 102/285 (35%), Gaps = 22/285 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTMTIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI- 293
            + +P  +  I    D   ++++         ++ V        +       +  +  + 
Sbjct: 211 RK-MPSTAKIICNDKDENVQKIISM--GCWSELVRV---NSDTGISITKHTLDYSKFELC 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++     +  + L GE    NA+ A  +   + I   ++ + LE    V  R E +    
Sbjct: 265 NINSNSIEISWGLIGEHNALNAMSAYAVAKQLNISDEVIKDALESFKGVKRRLEVLSHQG 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               +Y D+AH   S+++ L+ +R       ++           +
Sbjct: 325 N-VTLYDDFAHHPTSIKLTLEAVRNKAKEAYVIALIDPRSNTMRQ 368


>gi|209525298|ref|ZP_03273840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrospira maxima
           CS-328]
 gi|209494313|gb|EDZ94626.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrospira maxima
           CS-328]
          Length = 454

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 114/387 (29%), Gaps = 36/387 (9%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVAS 131
            +A  L   S  +  + P L    +     +               + +TGT+GK++  +
Sbjct: 61  DTAPDLVVVSPGVPWDLPALETARSLGIETIGEMELAWRNLQDIPWVGITGTNGKTTTTA 120

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + +I + +G ++   G            +    S                    V A  
Sbjct: 121 LIAKIFEVAGSAAPACGNIGNAVCELALQQQQNSSTPL---------------DWVIAEI 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +    G +T    DH++ H T   YF  K RL E         +   DDA
Sbjct: 166 SSFQIESSSTLAPQIGIWTTFTPDHLNRHYTLDNYFRIKARLMER----SQVQVFNGDDA 221

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGE 309
           Y +     A     + +     G    L         Q+  +   G     +    + G+
Sbjct: 222 YLRR---AAPELWPQAVWTSVNGAEELLGDRQRGVYIQENWVYQNGCAIAPVDSLKMVGD 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L+A       GID   +   +     VP R E V T      I    A   ++ 
Sbjct: 279 HNRQNLLMAVAAARIAGIDKEAIAHAISTFPGVPHRLEEVNTWMGIRWINDSKATNYDAA 338

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           ++ L  +        +++   G  +       +  I    A + ++    P      +  
Sbjct: 339 QVGLAAVEP-----PVILIAGGEAKAGDDTHWINTIHQKAAAVLLIGTAAPTF---AQRL 390

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEML 456
            E  +     +E      AI  A E+ 
Sbjct: 391 QETDYHNVEIVETLEN--AIPRAAELA 415


>gi|284008378|emb|CBA74784.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Arsenophonus
           nasoniae]
          Length = 436

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 139/400 (34%), Gaps = 61/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   SL      I ++  I ++ +   F          +  + I+A+TG++GKS
Sbjct: 66  ADLIVVSPGISLATPELKIAADKGIEIIGDIELF--------CRETHKPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +       G   T                    AL+ L+        +
Sbjct: 118 TVTALVGEMAKAANWRVAIGGNIGT-------------------PALTLLAKD-YDLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K    +  N+  DH+D + +  Q Y  AK+R++          II
Sbjct: 158 ELSSFQLE--TTSSLKAAVATILNVTEDHMDRYPSGIQQYRVAKLRIYAG----AKICII 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLF 304
              D  +  +  R      R +S G       L   C         + ++G+        
Sbjct: 212 NQQDPQTWPLRGR----DARCISFGINSGDYQLNTRCQ-------ELQIKGQPIINTAEI 260

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+    N + A  L  A+ I     L  L +   +P R + V  +     +    A 
Sbjct: 261 RLVGQHNYLNGVAALALADAVNIPRKASLAALTQYAGLPHRCQLVHQHLGIQWVNDSKAT 320

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  LK ++   +G + ++   G  +     P+   I+     +     D      
Sbjct: 321 NVGSTEAALKGLQ--VAGTLYLLL-GGEGKSADFSPLKPYISAKNIKLCCFGRDGY---- 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ++       +      + +R  +  L   D++++
Sbjct: 374 ------QLAQLKANSLLLDTMEQCLRVIVPELKAGDMVLL 407


>gi|56807439|ref|ZP_00365398.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus
           pyogenes M49 591]
          Length = 342

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 115/320 (35%), Gaps = 30/320 (9%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQ 221
              + I L   + ++       V      H  D   L  I +      T +G  H++Y  
Sbjct: 13  NYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFG 72

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           ++      KM++ +  +  +   I   D   D Y  E           V+  G Q +   
Sbjct: 73  SRDKIAQGKMQIVDG-MNSDGILIAPGDPIIDPYLPE--------NQMVIRFGNQQE--- 120

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +       +K  +T +          PLPG++   NA+VAA +   + +    ++  L+ 
Sbjct: 121 IDVTGIQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQT 180

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDR 394
           + +   R E+    + G  I  D Y     ++ +IL+    I     G+ I V     + 
Sbjct: 181 VTLTGNRTEW-KKAANGADILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKEL 239

Query: 395 DQGKRPIMGKIA----LDLADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            +    +  ++         D  +   D+         +   AE +H      E+ ++ E
Sbjct: 240 GKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKA-EQEDQFE 298

Query: 448 AIRTAIE-MLNKQDVLVVAG 466
           A+   ++ +LN  D +++ G
Sbjct: 299 AMAQYVQNILNPFDQILLKG 318


>gi|298507099|gb|ADI85822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens KN400]
          Length = 452

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 136/414 (32%), Gaps = 58/414 (14%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           + D   F        AE +VVS     +             V+          ASR    
Sbjct: 60  RHDEADFAA------AETVVVSPGVPQESPYLQAARQAGREVITEI-----ELASRFI-- 106

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++A+TGT+GK++  +   ++    G  +F  G                        
Sbjct: 107 -TAPLVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGN-------------------- 145

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  L + G     V           +   +       N+  DH+D + T Q Y +AK R
Sbjct: 146 PLIELVTTGAAVDRVVVEISSFQLEWIRSFRPTVAVLLNITEDHLDRYATYQEYIDAKAR 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQ 290
           +FE        A++  DD     +  R   A   +       +G F     +   H  +Q
Sbjct: 206 IFENQT-ASDWAVLNVDDPIVAGLTGRTRAAVFPMSRQRELAEGIFYRDGVIIFRHAGRQ 264

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                +       F + G   + N + +    + +G D+   L  +E    +P R E V 
Sbjct: 265 ERFPTD------RFRITGVHNIENIMASLAAALLLGCDADRALACVEAFGGLPHRMELV- 317

Query: 351 TNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               G R + D  A    S+E  L +   IT      +   G D+     P+ G +A  +
Sbjct: 318 RELDGVRYFEDSKATNVGSVEKALASFNDIT------LIAGGKDKGGSYAPLAGLVAERV 371

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             + ++       E  +++  E+ H +          +A+  A  +     V++
Sbjct: 372 RHMILI------GEAKDRMARELGH-LTDTRMTVTLEDAVELAASLTQPGGVVL 418


>gi|116253050|ref|YP_768888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|118595681|sp|Q1ME31|MURD_RHIL3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115257698|emb|CAK08796.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 470

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 110/290 (37%), Gaps = 35/290 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++  +     + +V +   F+     R         +A+TGT+GKS+  + +  I
Sbjct: 79  HPKPHWTVDLARAAGVDIVGDVELFVRE---RRAHAPDCPFIAITGTNGKSTTTALIAHI 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G  +   G   T                     L+    +   +  VE SS+ +D 
Sbjct: 136 LKSAGYDTQLGGNIGT-------------------AVLTLDPPKAERYYVVECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   NL  DH+D H T Q Y + K RL          AI+  DD++S  +
Sbjct: 177 A--PTLNPSAGILLNLTPDHLDRHGTMQHYADIKERLVAG----SDVAIVGVDDSHSALI 230

Query: 257 MKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             R   AG +V+ +  +      I+ +    I       +     D D +  L G     
Sbjct: 231 ADRVERAGVKVVRISRRNVVADGIYAEGTKLIQAAGGAML--PFADLDGIQTLRGSHNAQ 288

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           NA  A   C+A+G+ +  +   L     +  R + VG   RG  ++V+ +
Sbjct: 289 NAAAAVAACLAVGVSADAIRAGLASFPGLKHRMQPVG--QRGRVVFVNDS 336


>gi|21224390|ref|NP_630169.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces coelicolor
           A3(2)]
 gi|6919932|sp|Q9X827|MURC_STRCO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4691386|emb|CAB41553.2| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           coelicolor A3(2)]
          Length = 462

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 136/452 (30%), Gaps = 86/452 (19%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    + +A  A  +VVSSA    +      +   I VV  +       A+ +
Sbjct: 54  GATVHIGH--AAEHLAADASCVVVSSAIREDNPELVRAAELGIPVVHRSDA----LAALM 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G  P   +AV GT GK++  S +             +GP+  I                
Sbjct: 108 NGLRP---IAVAGTHGKTTTTSMLAVSLSEL-----DLGPSYAIGG-------------D 146

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L    S            EA       H+            N+  DH   + +    + +
Sbjct: 147 LDAPGSNALHGEGEIFVAEADESDRSFHKYA---PEVAIVLNVELDHHANYASMDEIYES 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
               F   +      +I AD   ++E+ +R      R ++ G  +   + +  V     K
Sbjct: 204 -FETFAGKIVPGGTLVIAADHEGARELTRRLAGR-VRTVTYGESEDADVRILSVVPQGLK 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +VT+ ++G +  F   +PG    +NA+ A     A+G+ +A +   L     V  R + 
Sbjct: 262 SEVTVVLDGAELTFAVSVPGRHYAHNAVAALAAGAALGVPAAELAPALAAYTGVKRRLQL 321

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----------------- 391
            G  + G ++   YAH    +   L+ +R       I+V                     
Sbjct: 322 KGEAA-GVQVVDSYAHHPTEMTADLEAMRAAVGDARILVLFQPHLFSRTQELGKEMGQAL 380

Query: 392 ------------GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
                         R+                   VT         E I           
Sbjct: 381 ALADASVVLDIYPAREDPIPG--------------VTS--------ELIVEAARAAGADV 418

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               ++  +      M    D+++  G G  T
Sbjct: 419 TPVHDKDASPALVAGMAKAGDLVLTMGAGDVT 450


>gi|25011704|ref|NP_736099.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus agalactiae
           NEM316]
 gi|77414228|ref|ZP_00790390.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae 515]
 gi|44888215|sp|Q8E3U2|MURC_STRA3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24413244|emb|CAD47323.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159717|gb|EAO70866.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus agalactiae 515]
          Length = 443

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 95/301 (31%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L V G  GK+S    +  + +    +SF IG  +   S   +                Y 
Sbjct: 106 LGVAGAHGKTSTTGLLAHVLKNITDTSFLIGDGTGRGSANAN----------------YF 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +       H                 TN+  DH DY    +  FNA     +++
Sbjct: 150 VFEADEYERHFMPYH-----------PEYSIITNIDFDHPDYFTGLEDVFNAFNDYAKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
              +    IY +D+   E+  +A      +   G++       K +    N     +   
Sbjct: 199 ---QKGLFIYGEDSKLHEITSKAP-----IYYYGFEDSNDFIAKDITRTVNGSDFKVFYN 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            ++   F  P  G+  + NA         +GID ALV EHL+    V  RF     +   
Sbjct: 251 QEEIGQFHVPAYGKHNILNATAVIANLYIMGIDMALVAEHLKTFSGVKRRFTEKIIDDTV 310

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   L   R    S  I+ +F                 AL  AD   
Sbjct: 311 II--DDFAHHPTEIIATLDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAHALSQADSVY 368

Query: 415 V 415
           +
Sbjct: 369 L 369


>gi|293603271|ref|ZP_06685701.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Achromobacter piechaudii
           ATCC 43553]
 gi|292818332|gb|EFF77383.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Achromobacter piechaudii
           ATCC 43553]
          Length = 456

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 118/363 (32%), Gaps = 31/363 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++ +S +  I + +GL+   +     I   A D ++   S  Y   
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILEAAGLAPNFL-----IGGVAADLKV---SARYDPA 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              ++        +          +R            NL  DH D      A    +  
Sbjct: 153 RRPFVIEADEYDTAFFDKRSKFVHYR-----PRTAILNNLEYDHADIFPDLAAI-ETQFH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P     +  A       V+  A       ++ G  G +       A  +    T
Sbjct: 207 HLVRTIPASGRIVRPARSDALDRVI--ARGCWSETVTFGPDGAWQA----SAPDDDGAFT 260

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G D     + L GE    NAL A       G+ +A  +  L +   V  R E  GT
Sbjct: 261 VLRNGADVGTVRWNLSGEHNRMNALAALAAAEHAGVPAAEGVTALTRFAGVKRRMELRGT 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDL 409
              G ++Y D+AH   ++   L+ +R       I+              +  +   AL  
Sbjct: 321 -VNGIKVYDDFAHHPTAIATTLEGLRRQVGSARILAVLEPRSNTMKLGTMAARLPAALAD 379

Query: 410 ADIAIV----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD+       +  +    +P ++ A +      + + G  +             D ++V 
Sbjct: 380 ADLVFCFGAHSGKHALGWNPAEVLAPLGDRASSYDDIGALV---AAVSAAARPGDQVLVM 436

Query: 466 GKG 468
             G
Sbjct: 437 SNG 439


>gi|291557934|emb|CBL35051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           siraeum V10Sc8a]
          Length = 438

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 115/338 (34%), Gaps = 48/338 (14%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           I+ +TGT GKS+ +S ++   ++SG  +  IG         ++                 
Sbjct: 109 IIGITGTKGKSTTSSLIKFFIEKSGKDTMLIGNIGVPPLERREEFTKDC----------- 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   +  E S H L+  +            N+  +H+D++    AY NAK+ +F  
Sbjct: 158 -------VIVCEMSCHQLEYVKAS---PDVAVLLNVYPEHLDHYTDFAAYRNAKLNIFR- 206

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                       D     E +K+  +   RV++ G+    I  +    I    +      
Sbjct: 207 -------YQNENDTLIIGEEVKQYDDTKARVITAGFSCGDIGTRN-GGIFIGDEFY---- 254

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L GE  +YN  +A       G      L+ L +   +  R E+V T +   
Sbjct: 255 -PADMIDTKLKGEHNLYNIAIAIYAATKAGCTVKQCLDALPQFCGLEHRLEYVCTLNGAE 313

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAI 414
            I    +    +    LK      +     +   G DR      +   ++ D +  ++ I
Sbjct: 314 YINDSISTAPQTAIAALKAYPDTDT-----LIIGGMDRGIPYDELSDWLSADTSVRNLII 368

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           + D   R      +  ++ + +   I   +  +A++ A
Sbjct: 369 LPDSGKR------VAEKVTNPLVKLIYADDMEQAVKYA 400


>gi|78044302|ref|YP_359198.1| folylpolyglutamate synthase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996417|gb|ABB15316.1| folylpolyglutamate synthase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 432

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/388 (16%), Positives = 125/388 (32%), Gaps = 49/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSF--------QIGPTSTISSFAQDNRLTTPSP 167
            ++ + GT+GK SV S    +   +G  +         +      I+         +   
Sbjct: 40  KVVHIGGTNGKGSVCSLTASVLAEAGYKTGLFTSPHLSRYTERYKINGKEISPERVSQLV 99

Query: 168 IYLAKALSYLSSQGVTHVSV----------------------EASSHGLDQHRLDGIKLI 205
             +   L  +  +G  H +                       E    GL        +  
Sbjct: 100 TEIRPLLLAMVEEGFEHPTEFEVSTAMAFKYFAEEEVDFVVLEVGLGGLIDSTNVVSRPE 159

Query: 206 AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             + TN+G DH+DY   T       K  + +  +P  + A   A     KEV K  ++  
Sbjct: 160 VVAITNVGMDHMDYLGNTITEIARVKAGIIKPGVPVVTAATGEAL-EVIKEVAKEKNSPL 218

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCI 323
             V       K I L         Q   +   G+ + +    L G  Q+ NA  + G+  
Sbjct: 219 LDV------NKDIVLNLKEKSLKGQVFDLIYRGETYPEIKIRLLGAHQLLNAKTSFGILN 272

Query: 324 AI----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +     I    +           GRFE++  N     + +D AH  + +  + +     
Sbjct: 273 ILREKYNIPVEAIYRGFSNATW-SGRFEYIPGNPP---VLLDGAHNHDGVRALRQAFTDY 328

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G   V+   G   D+ +  ++ ++     ++ +     PR+ D   +           
Sbjct: 329 FPGVKPVLLL-GVLADKEREKVVAELLDLPLEVVVTRPPTPRAGDITVLARLFKEKGVRV 387

Query: 440 IEKGNRIEAIRTAIEMLNK-QDVLVVAG 466
                  EA+   +E+  + Q +L++ G
Sbjct: 388 KVIEEPTEALSYGLEIAQEYQTLLLITG 415


>gi|58584378|ref|YP_197951.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58418694|gb|AAW70709.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 556

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 146/461 (31%), Gaps = 89/461 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +       N              + A  +  K+   ++AV+G+SGK+
Sbjct: 106 AQVVVYSSAIKSDNVELVAARNNN----KTILHRSGILAEIMKDKY---VIAVSGSSGKT 158

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   S   +  I     I +  Q+N     S I L +A              
Sbjct: 159 TTTAMIASIFDHSNTDATVI--VGGILNSYQNNSKLGKSDILLIEA-------------- 202

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      +  I       T++  DHID++ T     NA  +          P  + 
Sbjct: 203 -----DESDETMLKIPANIAVITSINNDHIDHYGTFDNIKNAFSQFINSADFAILPDSVG 257

Query: 248 ADDAYSKEVMKRAHNAGCRVL-------------------SVGYQGKFIHLKKVCAIHNK 288
            +D+ S  +          V+                   S   +   +    +   +N 
Sbjct: 258 INDSESVSIKFGFEGVYPFVIQSPFVVPVHDIGIKKKKSASCSIKASNVKANNIRQHNNS 317

Query: 289 QQVTISVEGKDFD----------------------------------FLFPLPGEFQVYN 314
            +  + ++G   D                                   L    G  +V N
Sbjct: 318 IEFDVLIDGCSIDRSHWIPASCTETTAVLPLSSTQITSLRSRIIKNVVLSNAIGMHKVSN 377

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  + I +GI+   + + L +   V  RF  V  + +  ++  DYAH  + ++  L 
Sbjct: 378 ALAAISVAIKLGINDVDIKKGLLEFKGVARRFSLVA-DIKDVKLIEDYAHHPSEIQATLT 436

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKI 428
             R+IT G+II +                     + D  I+   +P  + P      + I
Sbjct: 437 AARSITKGKIIGIIEPFRFARIRNFFDEFIRIFMMFDYVILVPVHPPEDKPILGCRIDDI 496

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           +  +I      ++  N    I   I    N  D+++  G G
Sbjct: 497 QEALISNGFNNVKIMNDALLISNFISDSTNSGDIVLFIGAG 537


>gi|288560299|ref|YP_003423785.1| cell wall biosynthesis protein Mur ligase family
           [Methanobrevibacter ruminantium M1]
 gi|288543009|gb|ADC46893.1| cell wall biosynthesis protein Mur ligase family
           [Methanobrevibacter ruminantium M1]
          Length = 539

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 112/369 (30%), Gaps = 45/369 (12%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126
            A +++            +   P++VVD      +                + ++GT+GK
Sbjct: 79  VACIITLTPKEDALEMASKLAFPVIVVDRIEFANAFALKWTIDNLSPNTQRVVISGTNGK 138

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK-------------A 173
           S+ +  +  I    G + F      +  +   D  +       +                
Sbjct: 139 STSSHLIYHILNHCGYNVFTNTDAKSEFNTLIDPMVAKLISEQVISKQDFDVRKLDSVAD 198

Query: 174 LSYLSSQG------------VTHVSVEASSHGLD----QHRLDGIKLIAGSFTNLGRDHI 217
           L  L S+G            V    V+     L     Q     I    G  TN+  DHI
Sbjct: 199 LKNLDSEGKPINKGAFDYIVVEVSEVQGWGSDLMKDHAQIMSSAINPDVGVVTNVAMDHI 258

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----Y 272
                 +  F+    L + +   +   ++  DD     +   A++      +        
Sbjct: 259 GLVNNIEEVFHETSGLVKAI--NKGGVVLNYDDENVLAMKDLANDGVDIFFTSMEKDSIL 316

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
              + + KKV        +    +        P  GE  + N L A   CI++ I    +
Sbjct: 317 NNDYDNDKKVYFDRKSNAIVYDNKNILRYDELPFTGEHFIRNILSAISACISLEIPIEDI 376

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVF 388
            E ++  + +  RF  +        +  D+AH  + ++  ++    +      G + +  
Sbjct: 377 CEGVKTYNPLSRRFTRLYDE---PIVIDDFAHNPDGIKNTVRAAYDLAEQFDKGDLYIAC 433

Query: 389 GCGGDRDQG 397
              G R + 
Sbjct: 434 AIRGSRGET 442


>gi|167837947|ref|ZP_02464806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis MSMB43]
          Length = 504

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 112/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 139 VLAVAGTHGKTTTSSMLAWMLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 183 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 241

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +   + V+ R       V   G  G +  L     +   ++  + 
Sbjct: 242 VRTVPGVGRLVTNGREDALERVLSR--GCWSDVERFGVDGGWQALPAEDGVPVDERFAVY 299

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +    + + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 300 WRSERVGVVGWHVQGEHNRLNALAAIAAARHVGVPPAQAAAALATFRNVKRRMEVRG-SV 358

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++EM +  +R         I+              +  ++   LAD
Sbjct: 359 DGVTVYDDFAHHPTAIEMTIAGLRARIGCENTRILAVLEPRSNTMKLGVMKAQLPASLAD 418

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +     P   D     +R  +           +    ++         D ++V   G
Sbjct: 419 ADLVFGYGAPTGRDALGWNLRDALAPLGDKARAFDDLHTLVKAVAASARPGDHVLVMSNG 478


>gi|126440835|ref|YP_001060472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 668]
 gi|126455119|ref|YP_001067736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106a]
 gi|167825874|ref|ZP_02457345.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 9]
 gi|167847357|ref|ZP_02472865.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei B7210]
 gi|167912589|ref|ZP_02499680.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 112]
 gi|226196829|ref|ZP_03792408.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242317055|ref|ZP_04816071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106b]
 gi|254190965|ref|ZP_04897471.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pasteur 52237]
 gi|254199141|ref|ZP_04905556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei S13]
 gi|254258821|ref|ZP_04949875.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710a]
 gi|126220328|gb|ABN83834.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 668]
 gi|126228761|gb|ABN92301.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106a]
 gi|157938639|gb|EDO94309.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pasteur 52237]
 gi|169656971|gb|EDS88368.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei S13]
 gi|225931089|gb|EEH27097.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242140294|gb|EES26696.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106b]
 gi|254217510|gb|EET06894.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710a]
          Length = 504

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 114/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 183 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 241

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    D   + V+ R       V   G  G +  L     +    +  + 
Sbjct: 242 VRTVPGVGRLVTNGRDDALERVLSR--GCWSDVERFGVDGGWQALPVENGVPVDGRFAVY 299

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 300 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 358

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +RT        I+              +  ++   LAD
Sbjct: 359 DGVTVYDDFAHHPTAIETTIAGLRTRIGRENTRILAVLEPRSNTMKLGVMKAQLPASLAD 418

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     P   D       + +  + G     + + A+  A+       D ++V   G
Sbjct: 419 ADLVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVMSNG 478


>gi|260061880|ref|YP_003194960.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Robiginitalea biformata HTCC2501]
 gi|88786013|gb|EAR17182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Robiginitalea biformata HTCC2501]
          Length = 451

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 123/363 (33%), Gaps = 33/363 (9%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 +  + + G+ GK+++ S +  +              + +  F +          
Sbjct: 97  YEQARDKTRVVIGGSHGKTTITSMILHVLSYW-DKPADYMVGAQLDGFDRMVH------- 148

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L     ++  +G  ++    SS    + +    +      + +  DHI+   T + Y  
Sbjct: 149 -LTGENEFMVLEGDEYL----SSAIDRRPKFHLYQPNIALLSGIAWDHINVFPTFENYLE 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            + R+F E +          +D   K +++            G Q            +  
Sbjct: 204 -QFRIFLEGIVPGGSITYNTEDPEVKALVE------------GLQAPIRKFPYATPDYEI 250

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +     ++  +      + G   + N   A  +C  +G+D+    E +        R E 
Sbjct: 251 RDGVTYLDTPEGMMPLKVFGRHNLNNMAGAQWICQQMGVDATEFYEAMATFKGAARRLEL 310

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--A 406
           +  N  G  ++ D+AH+ +  +   + +R    G+ +V               +     +
Sbjct: 311 LAGNDAGY-LFKDFAHSPSKAQATTRAVREQYPGKKLVACLELHTYSSLNADFLSDYRGS 369

Query: 407 LDLADIAIV--TDDNPRSEDPEKIR-AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
           LD AD A+V  T +  + +  E+I   +I        +E      A+R A+E L   D +
Sbjct: 370 LDAADRALVFYTPEALKIKGLEEISPEDIQRAFNLQHLEVYTETAALREALEDLEVSDTV 429

Query: 463 VVA 465
           ++ 
Sbjct: 430 LLM 432


>gi|312196223|ref|YP_004016284.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EuI1c]
 gi|311227559|gb|ADP80414.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EuI1c]
          Length = 498

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 124/455 (27%), Gaps = 86/455 (18%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G + +V SSA    D    + +    L V     +L    +         ++AV G+ G
Sbjct: 62  AGVDVVVASSALP-DDHPEIVAARAAGLPVRRRSDWLPELTAGY------RLVAVAGSHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ ++ +    + +G       PT+ I                    L      G    
Sbjct: 115 KTTTSAMLTVALRAAGAD-----PTAVIGGEVPQLGGGAVVGRGEIFVLEADEYGGAF-- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                          G+       TN+  +H D     +A   A    F   +      +
Sbjct: 168 --------------RGLDPAVTILTNVEWEHPDLFPD-EAAVRAVFAAFAARVRPGGTLV 212

Query: 246 IYADDAYSKEVM---KRAHNAGCRVLSVGYQ----------------------------- 273
              DD     V+         G RV+  G+                              
Sbjct: 213 ACGDDPGVAAVLGTLAEGSGGGPRVVRYGFGDGLGWRAVDVVTTGQPDGARPASGSATSA 272

Query: 274 ----GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G     +         + T+  +G+        LPG   V NAL        +G+ 
Sbjct: 273 DADGGADGLDRTAAGPPVVTEATVLRDGEPVGTLRLALPGRHTVLNALAVLATASELGVP 332

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTSNSLEMIL-KNIRTITSGR 383
               L  L        RF+ +G  +  G     I  DYAH    +   L    +     +
Sbjct: 333 VETTLTALAGYTGAARRFQRIGARALPGTGAVEIVDDYAHHPTEIRATLAAARQQAAGRQ 392

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIP---- 437
           +  V                 +A   AD   VTD     E  D      ++   +     
Sbjct: 393 VWAVLQPHTYSRLAALLADFAVAFGDADRLYVTDIYAARERDDLGVHACDLAKRVRVPAE 452

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                + E  +R+ A     ++     +L+  G G
Sbjct: 453 TSYVAWAELPDRLAA-----DLPGHDVLLLTLGAG 482


>gi|221217628|ref|ZP_03589097.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224533430|ref|ZP_03674023.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225550260|ref|ZP_03771219.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226320864|ref|ZP_03796416.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
 gi|221192574|gb|EEE18792.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224513392|gb|EEF83750.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225369128|gb|EEG98582.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226233730|gb|EEH32459.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
          Length = 468

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 142/419 (33%), Gaps = 54/419 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           IV SSAY+       + +   N PIL      + L   + + Y       + + G+ GK+
Sbjct: 76  IVYSSAYNKDGLQVLLEAKELNIPILSYP---EALGELSRKYY------SIGIAGSHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +F+  +  + GL+   I   S++  F  ++ +   S I++ +   Y +       ++
Sbjct: 127 TTTAFLGVLFNKLGLNPNVI-VGSSVKDFKDNSAMAGISNIFIVETCEYKNHFLNFSPNM 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A +R +   L K    II 
Sbjct: 186 L-------------------ILTNVDYEHVDFFKNYEALEEAFLR-YINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD    ++ ++ +     + S G  G     +        +    S  G   +      
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYG-SGDLSDFQISNIAVRSEYFCFSFLGL-LNVELKTV 283

Query: 308 GEFQVYN----ALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIY 359
               V N     L       + G       E ++++      +  R E V     G    
Sbjct: 284 LFHNVLNFSAALLALNLFLESNGKSIFDFKEAIKRIAKNYSGIKRRVEVVKEE-NGVIYM 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV--- 415
            DYAH    ++  L  I+     + I++ F         +        L  ADI I+   
Sbjct: 343 DDYAHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSDADILILHNI 402

Query: 416 -----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 403 YLSNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|134280443|ref|ZP_01767154.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 305]
 gi|237813866|ref|YP_002898317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei MSHR346]
 gi|134248450|gb|EBA48533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 305]
 gi|237503744|gb|ACQ96062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei MSHR346]
          Length = 504

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 114/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 183 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 241

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    D   + V+ R       V   G  G +  L     +    +  + 
Sbjct: 242 VRTVPGVGRLVTNGRDDALERVLSR--GCWSDVERFGVDGGWQALPVENGVPVDGRFAVY 299

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 300 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 358

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +RT        I+              +  ++   LAD
Sbjct: 359 DGVTVYDDFAHHPTAIETTIAGLRTRIGRENTRILAVLEPRSNTMKLGVMKAQLPASLAD 418

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     P   D       + +  + G     + + A+  A+       D ++V   G
Sbjct: 419 ADLVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVMSNG 478


>gi|76809096|ref|YP_334867.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710b]
 gi|76578549|gb|ABA48024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710b]
          Length = 494

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 114/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 129 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 173 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 231

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    D   + V+ R       V   G  G +  L     +    +  + 
Sbjct: 232 VRTVPGVGRLVTNGRDDALERVLSR--GCWSDVERFGVDGGWQALPVENGVPVDGRFAVY 289

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 290 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +RT        I+              +  ++   LAD
Sbjct: 349 DGVTVYDDFAHHPTAIETTIAGLRTRIGRENTRILAVLEPRSNTMKLGVMKAQLPASLAD 408

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     P   D       + +  + G     + + A+  A+       D ++V   G
Sbjct: 409 ADLVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVMSNG 468


>gi|290476455|ref|YP_003469360.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           bovienii SS-2004]
 gi|289175793|emb|CBJ82596.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           bovienii SS-2004]
          Length = 436

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 138/398 (34%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALATPELQAAADAGIEIVGDIELF--------CREATTPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +                      L  Q      +
Sbjct: 118 TVTTLVGEMAKEAGWQVGVGGNIGIPA--------------------LELLKQPCQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+  +      Y  AK+R++++        ++
Sbjct: 158 ELSSFQLE--TTYSLKAAAATVLNVTEDHMVRYPDGLSQYRAAKLRIYDQ----AKVCVV 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              DA    +         R +S G       L+       +QQ+ ++ +         L
Sbjct: 212 NEQDA----LTLPEAGKDSRCISFGVDSGAYQLES-----GRQQLVVNHQSLLETRQIRL 262

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+    N L A  L  A+GI     ++ L+    +  RF+ V   +    +    A   
Sbjct: 263 TGQHNYTNGLAALALADAVGIPREASIQALQTYPGLEHRFQVVHMRNGVRWVNDSKATNV 322

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            S +  L  +     G + ++   G  +     P+   ++ +   +     D        
Sbjct: 323 GSTQAALSGLTL--EGTLYLLL-GGDGKAADFTPLQPYVSGNNIRLYCFGCD---GNQLA 376

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++R EI       +      +A+R     L   D++++
Sbjct: 377 QLRPEI------SVLTETMEQAMRKIAPKLMTGDMVLL 408


>gi|167895945|ref|ZP_02483347.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 7894]
 gi|167920543|ref|ZP_02507634.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei BCC215]
          Length = 504

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 114/358 (31%), Gaps = 24/358 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     +      +   T S  ++ +A  Y
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFL--IGGVPLNFGVSARLTDSSYFVIEADEY 196

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++                       +       NL  DH D      A    +      
Sbjct: 197 DTAFFDKRSKFVHY------------RPRTAILNNLEFDHADIFPDLAAI-ETQFHHLVR 243

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     +    D   + V+ R       V   G  G +  L     +    +  +   
Sbjct: 244 TVPGVGRLVTNGRDDALERVLSR--GCWSDVERFGVDGGWQALPVENGVPVDGRFAVYWR 301

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +      + + GE    NAL A      +G+  A     L     V  R E  G +  G
Sbjct: 302 SERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SVDG 360

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI- 412
             +Y D+AH   ++E  +  +RT        I+              +  ++   LAD  
Sbjct: 361 VTVYDDFAHHPTAIETTIAGLRTRIGRENTRILAVLEPRSNTMKLGVMKAQLPASLADAD 420

Query: 413 AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
            +     P   D       + +  + G     + + A+  A+       D ++V   G
Sbjct: 421 LVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVMSNG 478


>gi|331090611|ref|ZP_08339462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401051|gb|EGG80646.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 451

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 107/277 (38%), Gaps = 16/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D  +    +  N+  DH+D H T +AY  AK  + +    ++   ++ 
Sbjct: 164 EISSFQLE--TVDAFRPKVSAILNITPDHLDRHHTMRAYIEAKETIAKNQTAED-VCVLN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  +++  ++         S     + ++L+    I+ +     ++   D      L 
Sbjct: 221 YEDEETRKFGEKTEATVLYFSSRRKLDRGVYLEDGTIIYAENGNRTTICHVD---ELKLL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  + +A  +   ++ + ++    V  R E+V    + G +Y + +  +N
Sbjct: 278 GVHNYENIMAAVAMSLAYHVPVDIIRQSVKAFGGVEHRIEYVCE--KNGVVYYNDSKGTN 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +  +K I  +     ++  G G D++      +      +  + ++     + E+  K
Sbjct: 336 P-DAAIKAISAMKKPTYLI--GGGYDKNASYEEWIESFDGKVQKLVLIGQTKEKIEETAK 392

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  G    +      EA+    E+  + + +++
Sbjct: 393 RC-----GFTDTVLAETLEEAVSICAELSREGEAVLL 424


>gi|199598140|ref|ZP_03211562.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           rhamnosus HN001]
 gi|199590901|gb|EDY98985.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           rhamnosus HN001]
          Length = 459

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 100/304 (32%), Gaps = 19/304 (6%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    +   +S ++ +     ++ A         +  +       TN+   H+D+H
Sbjct: 139 PHHAFDAGNIGIPVSQVAQKAGKDDTIVAELSSFQLCGIKTLHPHIAVLTNIYEAHLDWH 198

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
             +  Y  AKMR+     P +   + +       E+ + A  +  +++    +       
Sbjct: 199 GNRANYVAAKMRITMNQTPDDYFIMNWD----LPEMHQLAKQSQAQIVPFSRKQAA---- 250

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              A      +T   +         +PG   + NAL A       G+    + E L    
Sbjct: 251 GARASLIDGWLTFDGDKIMPASDMQIPGLHNIENALAAIAAAKLKGVSDDAIREVLRTFS 310

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R +++ T   G R+Y D   T+  +E     +       +      G DR      
Sbjct: 311 GVKHRIQYLET-INGRRVYNDSKATN--VEAATVALNAFQQPIVW--LAGGLDRGLPMDA 365

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +   +  + +     P      KI  +   GIP   +  N + A+  A E     D
Sbjct: 366 LTPLVKKHVKSMVVFGQTAPLM---AKIAKD--AGIP-VQKTENVMTAVPLAYEASRPGD 419

Query: 461 VLVV 464
           V+++
Sbjct: 420 VILL 423


>gi|229552075|ref|ZP_04440800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539491|ref|YP_003173990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314508|gb|EEN80481.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151167|emb|CAR90139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           rhamnosus Lc 705]
          Length = 459

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 100/304 (32%), Gaps = 19/304 (6%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    +   +S ++ +     ++ A         +  +       TN+   H+D+H
Sbjct: 139 PHHAFDAGNIGIPVSQVAQKAGKDDTIVAELSSFQLCGIKTLHPHIAVLTNIYEAHLDWH 198

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
             +  Y  AKMR+     P +   + +       E+ + A  +  +++    +       
Sbjct: 199 GNRANYVAAKMRITMNQTPDDYFIMNWD----LPEMHQLAKQSQAQIVPFSRKQAA---- 250

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              A      +T   +         +PG   + NAL A       G+    + E L    
Sbjct: 251 GARASLIDGWLTFDGDKIMPASDLQIPGLHNIENALAAIAAAKLKGVSDDAIREVLRTFS 310

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R +++ T   G R+Y D   T+  +E     +       +      G DR      
Sbjct: 311 GVKHRIQYLET-INGRRVYNDSKATN--VEAATVALNAFQQPIVW--LAGGLDRGLPMDA 365

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +   +  + +     P      KI  E   G+P   +  N + A+  A E     D
Sbjct: 366 LTPLVKKHVKSMVVFGQTAPLM---AKIAKE--AGVP-VQKTENVMTAVPLAYEASRPGD 419

Query: 461 VLVV 464
           V+++
Sbjct: 420 VILL 423


>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040776|gb|ACT57572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 468

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 102/292 (34%), Gaps = 30/292 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AVTGT+GKSS  + +  + +++G   + +     I     +    +P+        
Sbjct: 113 SPFIAVTGTNGKSSTVALISHVLRKNG---YDVQLGGNIGLPILNLEYFSPN-------- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS+ ++      I    G   N+  DH+D H T + Y N K ++ 
Sbjct: 162 --------RFYVIECSSYQIEL--TPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIV 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                    AII  +D   +++   A++      S+                ++  +  S
Sbjct: 212 T----MSKHAIICINDHQCEKI---AYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCS 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +          +  + N + +A +C+ +G+    +   L     +  R + +     
Sbjct: 265 ATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIA--RL 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           G  I+++ +  +N   +I   +        I       D      P + KIA
Sbjct: 323 GHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKIA 374


>gi|253582839|ref|ZP_04860058.1| folylpolyglutamate synthase [Fusobacterium varium ATCC 27725]
 gi|251835273|gb|EES63815.1| folylpolyglutamate synthase [Fusobacterium varium ATCC 27725]
          Length = 413

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 143/385 (37%), Gaps = 53/385 (13%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI------------------ 153
           ++   I+ + GT+GK S A+ ++ I   +G S  +      +                  
Sbjct: 38  QNSYKIIHIAGTNGKGSTATTLETILLEAGYSVGKYTSPHILKFNERIRADGKDISDEDI 97

Query: 154 --------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                    +        T   +  A    Y   + V +V +E    G      +  K  
Sbjct: 98  AYYYEMVKKAIENKKVKPTFFEVTTAMMFKYFQDKKVDYVVLETGM-GGRFDATNITKAD 156

Query: 206 AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               TN+  DH +Y   T       K  +      K+ P +I AD+    E +K  +   
Sbjct: 157 LCIITNVTLDHTEYLGDTIYKIAREKAGII-----KDCPKVIVADNN--SEFLKAINEEK 209

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +V++V  + K+    +           I ++G  F+F   L G++Q  N L A    + 
Sbjct: 210 AKVINVLEKYKY---AEEKLDFENFVTEIKIDGDIFEF--SLFGDYQFKNFLCAYEAALE 264

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGR 383
           +GI   ++ +  +K+        +    S    + +D AH  + + E+     +      
Sbjct: 265 LGISKEIIKKASKKVIWQCRFERY----SNNPLVVLDGAHNPDGMTELKKIIEKGYKPEE 320

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIE 441
           ++ +     D+D        KI   ++   I+T   +NPR    E+I  ++   I G   
Sbjct: 321 VVAIVSILKDKDIKSML---KILKSISSTLILTSLAENPRGTSGEEIYRQL-SNIDGCSI 376

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
           + + ++A + A++M  K  ++++ G
Sbjct: 377 ENDLMKAYKKALDMKKK--IILICG 399


>gi|53720587|ref|YP_109573.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Burkholderia pseudomallei
           K96243]
 gi|52211001|emb|CAH36989.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei K96243]
          Length = 494

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 114/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 129 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 173 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 231

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    D   + V+ R       V   G  G +  L     +    +  + 
Sbjct: 232 VRTVPGVGRLVTNGRDDALERVLSR--GCWSDVERFGVDGGWQALPVENGVPVDGRFAVY 289

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 290 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +RT        I+              +  ++   LAD
Sbjct: 349 DGVTVYDDFAHHPTAIETTIAGLRTRIGRENTRILAVLEPRSNTMKLGVMKAQLPASLAD 408

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     P   D       + +  + G     + + A+  A+       D ++V   G
Sbjct: 409 ADLVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVMSNG 468


>gi|313127012|ref|YP_004037282.1| dihydropteroate synthase [Halogeometricum borinquense DSM 11551]
 gi|312293377|gb|ADQ67837.1| dihydropteroate synthase [Halogeometricum borinquense DSM 11551]
          Length = 834

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 83/408 (20%), Positives = 136/408 (33%), Gaps = 47/408 (11%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG--PTS 151
           V   T    SL A           + V G++GK S A   + I + +GL+          
Sbjct: 18  VKPGTESVRSLLAEFDDPHEDVTFVQVAGSNGKGSTARMTESILREAGLTVGLYTSPHFE 77

Query: 152 TISSFAQDNRLTTPS-----------PIYLAKA----------------LSYLSSQGVTH 184
           T+   A+ +    P            P  + +A                + Y +   V  
Sbjct: 78  TVRERARVDGRKIPESAICEFVERAKPWLVERAADGEPLTFFEVVTALSIWYFAEAEVDV 137

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESP 243
             +E    G        +   A + TN+  +H      T +A    K      + P + P
Sbjct: 138 AVLEVGM-GGKLDATSVVDPAAAAVTNVSLEHTAVLGDTIEAIAEKKA----AVEPADRP 192

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +  A       +  R H      +            +    H +  V +  +    D  
Sbjct: 193 LVTGATGDALATI--RDHTTTVVTVGTEDDADVTVRSEGRVNHQESAVAVVADDWSVDSR 250

Query: 304 FPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEK-LHVVPGRFEFVGTNSRGGRIYV 360
            PL G +Q  NA +A  L   I   +DS +    LE+ L        F    +    + +
Sbjct: 251 IPLLGAYQAENAGIACVLARQITDELDSEIDETTLERGLRTAYWPGRFEVMETDPF-VVL 309

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDN 419
           D AH   + E +   +       + +VFG   D+DQ K       AL  AD  I    +N
Sbjct: 310 DGAHNPGACESVASVLDDFDVDALHLVFGAMHDKDQRKMVE----ALPDADSVITCRPNN 365

Query: 420 PRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           PRSEDPE +       G+       + + A+ TA +  +  D ++  G
Sbjct: 366 PRSEDPETLAHVFEDAGVDDITVGDDVLSAVETARDRADADDCILAVG 413


>gi|315633815|ref|ZP_07889104.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
 gi|315477065|gb|EFU67808.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
          Length = 434

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 135/394 (34%), Gaps = 54/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + VV +   F          +  + I+A+TG++GKS+V 
Sbjct: 68  IVISPGLAVKTPEIQTALQAGVEVVGDIELF--------CREADKPIVAITGSNGKSTVT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +GLS    G                        ALS L+        +E S
Sbjct: 120 TLVAEMAKAAGLSVGMGGNIG-------------------IPALSLLNQSH-DIYILELS 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K +A +  N+  DH++ +   Q Y +AK+++++        A++  +D
Sbjct: 160 SFQLE--TTYSLKTVAATVLNVTEDHMNRYVDLQDYRHAKLKIYDNC----QTAVVNGED 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +   +    +   RV    +   +    +    +   +  + +   +      L G  
Sbjct: 214 PLT---LPTTQHPEKRVSFAEHHADYWLKNENQKTYLMARGEVILACDEM----KLTGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A  L  A GI+   +   L +   +  RF+ V   + G R   D   T+    
Sbjct: 267 NYMNALAAIALAQAAGINLLGIQTALREFGGLEHRFQ-VAHMAHGVRWINDSKATNVGST 325

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       +     +++ G G   D     +   I            D            
Sbjct: 326 VAALTGLQVAGKLYLLLGGDGKGADFS--ELATLINQPHIFCYCFGQDG----------K 373

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   DV+++
Sbjct: 374 QLAALSSQSQLFDTMEQAIAAIRPQLQAGDVVLL 407


>gi|289551034|ref|YP_003471938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180566|gb|ADC87811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 449

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 99/267 (37%), Gaps = 24/267 (8%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +D  +      TN+   H+DYH T + Y NAK +++     K   A  Y    Y +  + 
Sbjct: 175 IDKYRPHIAIITNIYSAHLDYHGTLENYQNAKKQIY-----KNQTADDYLICNYHQRHLI 229

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALV 317
            +     + L    Q      ++V  I+ K    I    +  +     LPGE  + N L 
Sbjct: 230 ESEQLKAKTLYFSTQ------QEVDGIYIKDNFIIYKGVRIINIDDLVLPGEHNLENILA 283

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +  G+    +++ L     +  R +++GTN      Y + +  +N+L      + 
Sbjct: 284 AVLASLLAGVPVKAIIDSLTTFSGIEHRLQYIGTNRTNK--YYNDSKATNTLATQF-ALN 340

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +     I +    G DR      ++  +      + +V       E  EK          
Sbjct: 341 SFNQPIIWLC--GGLDRGNDFDELIPYM--KHVRVMVV-----FGETQEKFVKLGTSQGK 391

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I+  +  +A+    +++   DV+++
Sbjct: 392 YVIKATDVTDAVDKVQDVIEPNDVVLL 418


>gi|154174300|ref|YP_001408218.1| Mur ligase family protein [Campylobacter curvus 525.92]
 gi|112802478|gb|EAT99822.1| Mur ligase family protein [Campylobacter curvus 525.92]
          Length = 475

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 128/350 (36%), Gaps = 44/350 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +T + GK+S+ +F+ ++ +            +T++   +D            +   
Sbjct: 159 KVILITASYGKTSIKNFLYELLKDEFNCHKTPRSVNTLAGLMKDVN-----ENLTQQTQI 213

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A   G  +   D +         +G  HI+Y ++ +     K+    
Sbjct: 214 YIAEAG-------ARLKGDIKEITDFLNPHIVIVGEIGAQHIEYFKSIENIRATKLE--- 263

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                          A   + +++A      + S   + +  +        +   +  S+
Sbjct: 264 ---------------ALHSKHLEQAFVHSSTLKSADDKTQIYNAGLKDVSADFDGIKFSL 308

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G+ +    PL G+F   N      +   +G+    + + L++L  V  R + +     G
Sbjct: 309 DGEIY--TSPLLGKFNAANLAACIKVAKFLGLSDENIKKSLQRLQNVEHRLQKMQA---G 363

Query: 356 GRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G++ +D +   N   +    + I T   GR +++     +  Q +   +GKI  ++ D+ 
Sbjct: 364 GKLIIDDSFNGNFVGMSASYELIGTY-KGRKVLITPGIVESTQAENENLGKIINEIFDVV 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +++       + + +   I+   P  I   ++ +      +     DV++
Sbjct: 423 MISSP----LNAQALLKTIVK--PEIIIIKDKTKMQEILAKHTRAGDVIL 466


>gi|295109206|emb|CBL23159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus obeum
           A2-162]
          Length = 451

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 120/320 (37%), Gaps = 25/320 (7%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  Q  T    E SS  L+   ++       +  N+  DH++ H T + Y   K  L  +
Sbjct: 153 LEMQDNTTTVAEISSFQLE--TIEEFAPKVSAILNITEDHLNRHHTMEEYIRVK-ELIVK 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +   I+  +D   +E  +          SV    + I+L          Q+ +   
Sbjct: 210 NQTADDFCILNYEDPVLREFGRNITPKVVYFSSVRRLEEGIYLD-------GDQIILKTS 262

Query: 297 GKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++   +      L G+    N + A+ +    G+    + + + +   V  R E+V   
Sbjct: 263 EEEIPLVRTGELKLLGQHNFENVMAASAMAYYAGVPVESIRKSICEFTAVEHRIEYVTE- 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            + G +Y + +  +N  +  +K I+ +    +++  G G D+  G    +      +  +
Sbjct: 322 -KNGVVYYNDSKGTNP-DAAIKGIQAMNRPTLLI--GGGYDKGSGYDEWLNAFDGKVRYL 377

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            ++      + D  K  AE + G+   I   N  EA++   E  N  D ++++       
Sbjct: 378 VLIGQ----TRDKIKAAAERL-GVCPCILCENLEEAVKVCAEKANPGDAVLLSPACASWG 432

Query: 473 HIVTNGEKKMSVDCDIIREI 492
               N E++  +  + +R +
Sbjct: 433 Q-FDNYEQRGDMFKEYVRNL 451


>gi|315658530|ref|ZP_07911402.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
 gi|315496859|gb|EFU85182.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
          Length = 449

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 99/267 (37%), Gaps = 24/267 (8%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +D  +      TN+   H+DYH T + Y NAK +++     K   A  Y    Y +  + 
Sbjct: 175 IDKYRPHIAIITNIYSAHLDYHGTLENYQNAKKQIY-----KNQTADDYLICNYHQRHLI 229

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALV 317
            +     + L    Q      ++V  I+ K    I    +  +     LPGE  + N L 
Sbjct: 230 ESEQLKAKTLYFSTQ------QEVDGIYIKDNFIIYKGVRIINIDDLVLPGEHNLENILA 283

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +  G+    +++ L     +  R +++GTN      Y + +  +N+L      + 
Sbjct: 284 AVLASLLAGVPVKAIIDSLTTFSGIEHRLQYIGTNRTNK--YYNDSKATNTLATQF-ALN 340

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +     I +    G DR      ++  +      I +V       E  EK          
Sbjct: 341 SFNQPIIWLC--GGLDRGNDFDELIPYM--KHVRIMVV-----FGETQEKFVKLGTSQGK 391

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I+  +  +A+    +++   DV+++
Sbjct: 392 YVIKATDVTDAVDKVQDVIEPNDVVLL 418


>gi|109892755|sp|Q5GTG5|MURC_WOLTR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 536

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 146/461 (31%), Gaps = 89/461 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +       N              + A  +  K+   ++AV+G+SGK+
Sbjct: 86  AQVVVYSSAIKSDNVELVAARNNN----KTILHRSGILAEIMKDKY---VIAVSGSSGKT 138

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  I   S   +  I     I +  Q+N     S I L +A              
Sbjct: 139 TTTAMIASIFDHSNTDATVI--VGGILNSYQNNSKLGKSDILLIEA-------------- 182

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                      +  I       T++  DHID++ T     NA  +          P  + 
Sbjct: 183 -----DESDETMLKIPANIAVITSINNDHIDHYGTFDNIKNAFSQFINSADFAILPDSVG 237

Query: 248 ADDAYSKEVMKRAHNAGCRVL-------------------SVGYQGKFIHLKKVCAIHNK 288
            +D+ S  +          V+                   S   +   +    +   +N 
Sbjct: 238 INDSESVSIKFGFEGVYPFVIQSPFVVPVHDIGIKKKKSASCSIKASNVKANNIRQHNNS 297

Query: 289 QQVTISVEGKDFD----------------------------------FLFPLPGEFQVYN 314
            +  + ++G   D                                   L    G  +V N
Sbjct: 298 IEFDVLIDGCSIDRSHWIPASCTETTAVLPLSSTQITSLRSRIIKNVVLSNAIGMHKVSN 357

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  + I +GI+   + + L +   V  RF  V  + +  ++  DYAH  + ++  L 
Sbjct: 358 ALAAISVAIKLGINDVDIKKGLLEFKGVARRFSLVA-DIKDVKLIEDYAHHPSEIQATLT 416

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKI 428
             R+IT G+II +                     + D  I+   +P  + P      + I
Sbjct: 417 AARSITKGKIIGIIEPFRFARIRNFFDEFIRIFMMFDYVILVPVHPPEDKPILGCRIDDI 476

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           +  +I      ++  N    I   I    N  D+++  G G
Sbjct: 477 QEALISNGFNNVKIMNDALLISNFISDSTNSGDIVLFIGAG 517


>gi|306836495|ref|ZP_07469467.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens
           ATCC 49726]
 gi|304567629|gb|EFM43222.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens
           ATCC 49726]
          Length = 119

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTA 452
           RPIMG+ A   AD+ +VTDDNPR+EDP  IRA +I G           E+G+R  AI   
Sbjct: 2   RPIMGEAAATRADLTVVTDDNPRTEDPAAIRAAVIEGARQAAPDADIREQGSRARAIDEV 61

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           ++     D ++V GKGHE   +V           ++ R I
Sbjct: 62  VDWAQPGDAIIVVGKGHEVGQLVGERTLHFDDREEMARAI 101


>gi|256784420|ref|ZP_05522851.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces lividans TK24]
 gi|289768299|ref|ZP_06527677.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
 gi|289698498|gb|EFD65927.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
          Length = 462

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 136/452 (30%), Gaps = 86/452 (19%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    + +A  A  +VVSSA    +      +   I VV  +       A+ +
Sbjct: 54  GATVHIGH--AAEHLAADASCVVVSSAIREDNPELVRAAELGIPVVHRSDA----LAALM 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G  P   +AV GT GK++  S +             +GP+  I                
Sbjct: 108 NGLRP---IAVAGTHGKTTTTSMLAVSLSEL-----DLGPSYAIGG-------------D 146

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L    S            EA       H+            N+  DH   + +    + +
Sbjct: 147 LDAPGSNALHGEGEIFVAEADESDRSFHKYA---PEVAIVLNVELDHHANYASMDEIYES 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
               F   +      +I AD   ++E+ +R      R ++ G  +   + +  V     K
Sbjct: 204 -FETFAGKIVPGGTLVIAADHEGARELTRRLAGR-VRTVTYGESEDADVRILSVVPQGLK 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +VT+ ++G +  F   +PG    +NA+ A     A+G+ +A +   L     V  R + 
Sbjct: 262 SEVTVVLDGAELTFAVSVPGRHYAHNAVAALAAGAALGVPAAELAPALAAYTGVKRRLQL 321

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----------------- 391
            G  + G ++   YAH    +   L+ +R       I+V                     
Sbjct: 322 KGEAA-GVQVVDSYAHHPTEMTADLEAMRAAVGDARILVLFQPHLFSRTQELGKEMGHAL 380

Query: 392 ------------GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
                         R+                   VT         E I           
Sbjct: 381 ALADASVVLDIYPAREDPIPG--------------VTS--------ELIVEAARAAGADV 418

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
               ++  +      M    D+++  G G  T
Sbjct: 419 TPVHDKDASPALVAGMAKAGDLVLTMGAGDVT 450


>gi|157825688|ref|YP_001493408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
 gi|157799646|gb|ABV74900.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
          Length = 492

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 117/359 (32%), Gaps = 80/359 (22%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S    L      I  N  I V+ +                  N +A+TGT+GKS+  
Sbjct: 67  IILSPGVPLTHKIVGIAKNFNIPVISDIDLL-------FEKSKNLNFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G                     +    +  S  G     +E S
Sbjct: 120 ALISHILNSSGLDYQVAGNIG------------------VPALQAKASKDG---YVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+  + K+S A+I  D+
Sbjct: 159 SFQLDL--VKIFTAKIAVLLNITPDHLDRHQHMNGYIAAKSKIFDR-MDKDSYAVINIDN 215

Query: 251 AYSKEV----------------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            Y +E+                + +       V+       F    +    +N +    +
Sbjct: 216 DYCREIFITLQQEQRIKLVPFSVTKILENCISVVDNKINDNFFDDIRFECQYNSESFRQN 275

Query: 295 -VEGK-------------------------DFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             +G+                            F   L G     N   +  +   IG++
Sbjct: 276 EFQGEPAERIKVCEHRLDLQNSLVSNFLNDAVPFNNNLQGTHNDENIAASYAVAKIIGVE 335

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITSG 382
              +LE +     +P R +++ + +     + + +  +N++  +     L NI  +  G
Sbjct: 336 PKKILESISGFQSLPHRMQYICSINNIN--FYNDSKATNAISAVQSIKALDNIYWLAGG 392


>gi|294085903|ref|YP_003552663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665478|gb|ADE40579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 451

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 95/314 (30%), Gaps = 54/314 (17%)

Query: 70  AIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+V+S      +     +A   ++  + ++      L         K    ++A+TGT+G
Sbjct: 70  ALVISPGIPHLHPKPHPAAAKATSMGVPIISEVELALRA-------KSNARLIAITGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  + +      +G           +     D   +   P                ++
Sbjct: 123 KSTCTALLAHCLTEAGAKIA-------VGGNIGDAACSLEDPGTNG------------YI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS+ L+      +    G   N+  DH+D H     Y  AK +L           I
Sbjct: 164 ILELSSYQLE--TTPSLAPDFGVVLNITPDHLDRHGGMDGYVAAK-QLMVTATRAGGHVI 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + +DDAY ++           V +V                         +G+D      
Sbjct: 221 LGSDDAYVRDFANTNVADTVTVKTVTSSDA-------------------PKGRDASPALK 261

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G     NA   A +   +G    ++   +     +P R + VG       I    A  
Sbjct: 262 --GAHNAQNAAAMASIMRLLGYAENMIDAGMASFAGLPHRLQPVGQTGHITFINDSKATN 319

Query: 366 SNSLEMILKNIRTI 379
             +    L     I
Sbjct: 320 GVAAAKALTAFNNI 333


>gi|167721280|ref|ZP_02404516.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei DM98]
 gi|167817467|ref|ZP_02449147.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 91]
 gi|167904331|ref|ZP_02491536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei NCTC 13177]
 gi|217420664|ref|ZP_03452169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 576]
 gi|254180598|ref|ZP_04887196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1655]
 gi|184211137|gb|EDU08180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1655]
 gi|217396076|gb|EEC36093.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 576]
          Length = 504

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 114/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 183 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 241

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    D   + V+ R       V   G  G +  L     +    +  + 
Sbjct: 242 VRTVPGVGRLVTNGRDDALERVLSR--GCWSDVERFGVDGGWQALPVENGVPVDGRFAVY 299

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 300 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 358

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +RT        I+              +  ++   LAD
Sbjct: 359 DGVTVYDDFAHHPTAIETTIAGLRTRIGRENTRILAVLEPRSNTMKLGVMKAQLPASLAD 418

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     P   D       + +  + G     + + A+  A+       D ++V   G
Sbjct: 419 ADLVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVMSNG 478


>gi|212696279|ref|ZP_03304407.1| hypothetical protein ANHYDRO_00816 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676908|gb|EEB36515.1| hypothetical protein ANHYDRO_00816 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 424

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 68/401 (16%), Positives = 131/401 (32%), Gaps = 45/401 (11%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--------- 147
           + +   SL       +    ++ + GT+GK S A+F+     ++                
Sbjct: 24  DLKAIRSLLKDLGDPQDKIKVIHIAGTNGKGSTANFIASTLAQTKKCGIFTSPYMEEINE 83

Query: 148 -----GPTSTISSFAQDNRLTTPSPIYLAK--------------ALSYLSSQGVTHVSVE 188
                G + +   F     +  P    L K                 Y   + V    VE
Sbjct: 84  EVRINGISISYEDFFYYIEMIKPICENLDKIGLRNTYFEVMTALMFRYFYDKNVDVCVVE 143

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIY 247
               GL        K +A   T +  DH+     + +     K  + ++ +P      IY
Sbjct: 144 TGLGGLLDSTNVVKKPMACLITTISMDHMSILGNSLEEIAKNKAGIIKDNVP----VFIY 199

Query: 248 ADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +  +  ++K+ A      +    +       + +    N        +G   D    L
Sbjct: 200 PQNTIAYNIIKKEAKKKNAPLHEFSFD------QIIIKSQNTGYNQFDFKGYS-DVKTSL 252

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+ Q+YNA  A  L      D  L    +++          +   S   R+ +D +H  
Sbjct: 253 IGKIQIYNACNAINLLDYFKDDFDLDDHIIKEGIYNSKNPGRLQMISIKPRVLLDGSHNR 312

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDP 425
            S + +L ++      R+IV F    D++        K   ++A   +VT  DNPR+ + 
Sbjct: 313 ESFDALLDSLSLFNYNRLIVGFSVLKDKEYKYII---KKLSEIASEIVVTSVDNPRAFEA 369

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++++  +           N I A           D+++  G
Sbjct: 370 KELKEIVKKDFSKVRAIENNISAYEFTKSRAKNDDLVLWCG 410


>gi|145637113|ref|ZP_01792776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittHH]
 gi|145269767|gb|EDK09707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittHH]
          Length = 437

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 128/394 (32%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F             + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTLEIQTALKAGVEVIGDIELF--------CHAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                        ALS L+        +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIG-------------------IPALSLLNED-CELYVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLE--TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +       N     +S         LK     + KQ + +  E         L G  
Sbjct: 215 ---RLTFGENENQAKHTVSFAENSADYWLKT---ENGKQYLMVKDEVILPCEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+ V   + G R   D   T+    
Sbjct: 269 NYMNILAAIALAQAIGINLDSIRTALRHFKGLDHRFQLVH-QANGIRWINDSKATNVGST 327

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       I     +++ G G   D      + ++      I           D     A
Sbjct: 328 VAALAGLYIEGKLHLLLGGDGKGADFS---ELAELINQPHIICYC-----FGRD----GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +AI      L   D++++
Sbjct: 376 LLAKFSSQSYLFETMKQAIEFLRPTLQSGDMVLL 409


>gi|58699164|ref|ZP_00373984.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534320|gb|EAL58499.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 113

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              G  +   +  +  +        A VTDDN R EDP KIR +I+   P  +E G R E
Sbjct: 5   LVQGSLKVMEQVKLCVEEKKSWKLSACVTDDNSRDEDPAKIRHDILLHCPDALEIGGRRE 64

Query: 448 AIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           AI   +++  N+  +L+VAGKG+E   I+ N   +   D ++I+ 
Sbjct: 65  AIEKGVDIAYNEGMILLVAGKGNEKFQIIGNQTFE-FSDVEVIKN 108


>gi|73542665|ref|YP_297185.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           eutropha JMP134]
 gi|118595678|sp|Q46WZ2|MURD_RALEJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72120078|gb|AAZ62341.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia eutropha
           JMP134]
          Length = 503

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 106/310 (34%), Gaps = 45/310 (14%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L+      +   A +  N+ +DH+D+H + +AY  +K R+F        
Sbjct: 176 DVWVLELSSFQLE--TTHTLAPHAATVLNVTQDHLDWHGSMEAYAASKARIF----GPAG 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVL----------SVG------------------YQG 274
            A +   +   +  M  A      V           S G                   +G
Sbjct: 230 TACVQVLNRNDRLTMDMARPGTAPVTFGTDLPETPGSFGVLREGGMPWLVLAEPDSEAEG 289

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +    ++      ++ V +  +         + G     NA+ A  LC AI +    +L 
Sbjct: 290 EGKPRRRKADATAQEAVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDLPLNALLH 349

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L +    P R E+V T       Y D +  +N +   +  +  +     +V+   G  +
Sbjct: 350 GLREYRGEPHRVEWVATIDEVE--YFDDSKGTN-VGATVAALSGLDK--RVVLIAGGEGK 404

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            Q   P+   +A     + ++           ++R  +       ++     EA+  A E
Sbjct: 405 GQDFSPLAAPVAQYARAVVLI------GRAAGELRDALQGSGASLVDAATLEEAVNKAAE 458

Query: 455 MLNKQDVLVV 464
           +    DV+++
Sbjct: 459 LAEGGDVVLL 468


>gi|254253293|ref|ZP_04946611.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
 gi|124895902|gb|EAY69782.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
          Length = 497

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 111/360 (30%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 141 VLAVAGTHGKTTTSSMLAWLLEDAGLNPGFL-----IGGVPLNFGIS-----------AR 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 185 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 243

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +        + V+  A      V   G  G +  L     +   ++  + 
Sbjct: 244 VRTVPGVGRIVTNGRAGALERVL--ARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVY 301

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + +   +  + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 302 RQAERVGEVAWQVQGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRMEVRG-SI 360

Query: 354 RGGRIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            G  +Y D+AH   ++E     L+      + RI+ V     +  +         A    
Sbjct: 361 DGVTVYDDFAHHPTAIETTIAGLRARIGRQNSRILAVLEPRSNTMKLGVMKAQLPASLTD 420

Query: 411 DIAIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +     P   D     +   +           +    ++  ++     D ++V   G
Sbjct: 421 ADLVFGYGAPTGRDALGWNLADALAPLGAKARAFDDLHLLVKAVVKAARPGDHVLVMSNG 480


>gi|119953594|ref|YP_945804.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia turicatae 91E135]
 gi|119862365|gb|AAX18133.1| UDP-N-acetylmuramate--alanine ligase [Borrelia turicatae 91E135]
          Length = 486

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 149/422 (35%), Gaps = 60/422 (14%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           ++ S AY   + S  + +     PIL      +F+   + + Y       + V G+ GK+
Sbjct: 94  LIYSPAYDKDNLSVLLEARELGIPILSYP---EFIGKISKKYY------SIGVAGSHGKT 144

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + A+F+  +    GL    I   +++  F   + L   S I++A+   Y +       ++
Sbjct: 145 TTAAFLGLLFNSLGLQPNVI-LGASVKDFGDKSSLVGQSNIFIAETCEYRNHFLHFSPNM 203

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A  N  ++ +   L K    II 
Sbjct: 204 I-------------------VLTNIDYEHVDFFENYEAVENVFLQ-YINNLKKNGILIIN 243

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           AD+    ++  R      +V SVG+       K        + +     G   D     P
Sbjct: 244 ADEVNLLKIKNRILRKDIKVFSVGFNS-LADFKIERFELIDEFLKFDFLGG-IDIRLRSP 301

Query: 308 GEFQVYNALVAAGLCIA-------IGIDSALVLEHLEK-LHVVPGRFEFVGTNSRGGRIY 359
               V N  ++             +       ++ + K    +  R EF+     G    
Sbjct: 302 LMHNVLNFALSLLAVKLFFEEHKKLVWSFDDRIKMMAKEYMGIKRRMEFI-MEKDGVIYL 360

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            DYAH    +E  L  ++T   GR I +           + + G+    L+++ ++   N
Sbjct: 361 DDYAHHPKEIESTLLGLKTFYKGRRI-ILDFMPHTFTRTKVLFGEFVKVLSNVDVLILHN 419

Query: 420 ---PRSED--PEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
                 ED  P K+  E+   +         F E  +   A+     +L + D+ V  G 
Sbjct: 420 IYLSVREDFNPNKLSKELFLALKDLNQNVYFFKEVVD---AVDFIKGLLKRNDLFVTMGA 476

Query: 468 GH 469
           G+
Sbjct: 477 GN 478


>gi|3820539|gb|AAC84012.1| UDP-N-acetylmuramyl tripeptide synthetase MurC [Heliobacillus
           mobilis]
          Length = 455

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/425 (14%), Positives = 123/425 (28%), Gaps = 77/425 (18%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ----RSGLSSFQIGPTSTIS 154
           R+      + L  +     + VTGT+GK++ +  +  I +        +         I+
Sbjct: 25  RRVAPQILTALARQLKRGAMVVTGTNGKTTTSKMLAAIVEKSSLTLTHNRAGANLVGGIT 84

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           +   D+     S                + + +           +  ++      TN  R
Sbjct: 85  TAFIDSATIGGSIT--------------SDLGIIEVDEATIPQLVREVQPKGVVVTNFFR 130

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------------------- 252
           D +D         +        LLP +S A++ ADD                        
Sbjct: 131 DQLDRFGELDKTVSLVGEAL-RLLPVQSIAVLNADDPLVASLGKDFPGRVLYFGIDDRSY 189

Query: 253 -SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----------------------K 288
            ++E+++ A    CR+        +    ++                             
Sbjct: 190 GAREMLQSAETRFCRLCGHPLTYDWFFFGQLGHYRCSHCGFERPEPKIKVTGIQLKGEEG 249

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+      +      PG + +YNAL A    I + +    +   L+      GR E 
Sbjct: 250 SAFTVETPRGTWQLELSTPGFYNIYNALAAIASAIRLDLPEKAIRAGLQGYRTNFGRMER 309

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +     G R ++         + +++ +      + ++V       D      +     +
Sbjct: 310 IELE-DGRRAFLALIKNPTGCDEVIRTLVQNRGPKRLLVIINDNAADGRDISWLWDADFE 368

Query: 409 LADIA------IVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQD 460
             +        + T    R ED          GIP      + N   AIR+A+EM    +
Sbjct: 369 SLEPVYPELRSVFTS-GLRGEDMA--LRLNYTGIPAESIRYEANVESAIRSALEMTEPGE 425

Query: 461 VLVVA 465
            L + 
Sbjct: 426 TLYIL 430


>gi|254525588|ref|ZP_05137640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537012|gb|EEE39465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
          Length = 478

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 103/319 (32%), Gaps = 40/319 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS +      +        I VV        +           N + +TGT+GK++V 
Sbjct: 83  VVVSPSIPYDHTTIIELKKKGIKVVGEINVAWEIL-------KDTNWIGITGTNGKTTVT 135

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I   +GL +   G   T                 L K       + +  V  E S
Sbjct: 136 HLLSHILCDNGLYAPFAGNIGTP----------------LCKYACSKKLEKIDWVVAELS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ ++      +K   G +T    DH++ H+T + YFN K  L    L K    I   DD
Sbjct: 180 SYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSL----LEKSDFRIYNYDD 233

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE- 309
              +              S+            C      Q  I   GK    L       
Sbjct: 234 KNLRNHYSSLSRGVWITTSLDKSN-----FIQCDYWIDDQAYIVERGKRLFKLEYFSLRG 288

Query: 310 -FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N L+       +G+    + + L     +P R E +  N+    I    A   +S
Sbjct: 289 MHNLQNLLLVIAAVRKVGLSGKEIKDSLSNYKQLPHRMETIYKNNYLEIINDSKATNFDS 348

Query: 369 LEMILKNIRTITSGRIIVV 387
               + +I     G++I++
Sbjct: 349 SIAGISSIE----GQMIII 363


>gi|209550176|ref|YP_002282093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535932|gb|ACI55867.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 470

 Score = 94.3 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 35/290 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++  +     + +V +   F+     R         +A+TGT+GKS+  + +  I
Sbjct: 79  HPKPHWTVDLARAAGVDIVGDVELFVRE---RRAHAPDCPFIAITGTNGKSTTTALIAHI 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G  +   G   T                     L+    +   +  VE SS+ +D 
Sbjct: 136 LKSAGYDTQLGGNIGT-------------------AVLTLDPPKAGRYYVVECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   NL  DH+D H T Q Y + K RL          AI+  DD++S  +
Sbjct: 177 A--PTLNPSAGILLNLTPDHLDRHGTMQHYADVKERLVAG----SDVAIVGVDDSHSALI 230

Query: 257 MKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             R   A  +V+ +  +      I+ +    I       +     D D +  L G     
Sbjct: 231 ADRVERADVKVVRISRRSVVASGIYAEGSRLIQAAGGAML--PFADLDGIQTLRGSHNAQ 288

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           NA  A   C+A+G+ +  +   L     +  R + VG   RG  ++V+ +
Sbjct: 289 NAAAAVAACLAVGVSADDIRAGLASFPGLKHRMQPVG--QRGRVVFVNDS 336


>gi|300309676|ref|YP_003773768.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Herbaspirillum
           seropedicae SmR1]
 gi|300072461|gb|ADJ61860.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 710

 Score = 94.3 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 113/333 (33%), Gaps = 36/333 (10%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L  H    ++  A +  NL +DH+D+H + + Y   K R+F +     +
Sbjct: 382 QAWVLELSSFQL--HTTHSLQADAATVLNLTQDHLDWHGSMEHYAADKARIFGQ----HT 435

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVL-------SVGYQGKFIHLKKVCAIHNKQQVT--- 292
             ++  DDA   ++           L       S G       L    A  ++       
Sbjct: 436 VRVLNRDDALVMQMAAAGSALSTFGLDEPTAPNSFGLVNDNGMLWLANAFVHEDDEVPEG 495

Query: 293 -------------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                        ++++         + G     NAL A  LC AI +  A +L  L   
Sbjct: 496 KRRRKQKDMLPPPVTLKRLMPADALKIRGAHNAMNALAALALCRAIDLPMAPLLHGLRDY 555

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
              P R E VG   +    Y D   T+    +   N   +      +V   GGD      
Sbjct: 556 TGEPHRVELVGV-IQEVDYYDDSKGTNVGATVAALNGLGLGGRPNRIVLIAGGDGKGQDF 614

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             +       A   ++        D   IRA +       I+  +   A+  A E+    
Sbjct: 615 SPLDLPVQKYARAVLLI-----GRDAPAIRAALADSGVELIDCASLEAAVEKAGEIATAG 669

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D+++++     ++ +  N   +  V  D +RE+
Sbjct: 670 DIVLLS-PACASLDMFRNYAHRAEVFVDAVREL 701



 Score = 39.2 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPI----LVVDNTRKFLSLFASRLYGKHPENIL 118
           A+ +G + + VS   + +   A +          L  +      +L A R    +   +L
Sbjct: 67  ALLEGVDFVAVSPGLAPEGELAPLMPAIAERSLPLWGEIELFAQALVALREETLYQPKVL 126

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           A+TGT+GK++V      +CQR+GLS    G  S
Sbjct: 127 AITGTNGKTTVTRLTGLLCQRAGLSVQVAGNIS 159


>gi|86134326|ref|ZP_01052908.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
 gi|85821189|gb|EAQ42336.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
          Length = 450

 Score = 94.3 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 111/359 (30%), Gaps = 57/359 (15%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA +GT GK++ +S +  I +    +SF  G     +S                     L
Sbjct: 115 LAASGTHGKTTTSSMLGHIMEPEKATSFLGGVAENYNSNLI------------------L 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ---TQQAYFNAKMRLF 234
               +T V  +       Q     +       T++  DH+D +    + +  F A     
Sbjct: 157 GEDKITVVEADEFDRSFLQ-----LSPNIACVTSMDADHLDIYGEASSLEESFVAFSWKV 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + L                 ++ +         +V     +     +          + 
Sbjct: 212 SDTL-----------------IVAKGLPLEGLTYAVDEPADYK-AYNLKIKEGTYVFDVQ 253

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       LPG+  V NAL A  +    G+    +   L     V  RF +    +
Sbjct: 254 TPTSSIQNIELHLPGKHNVMNALAALAMADVYGVSLEKIKVQLASFKGVKRRFSY-KIKT 312

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADI 412
           +   +  DYAH    +  +  +IR +     ++ +F                +AL   D 
Sbjct: 313 KELVLIDDYAHHPTEINAVESSIREMYPNEKVLAIFQPHLFSRTKDFVDDFALALSKFDE 372

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIR----TAIEMLNKQDV 461
            I+ D  P  E+P      E +  +I        EK N I+ I+      I ML   D+
Sbjct: 373 VILLDIYPAREEPIPNVTSEWLLGKITSKQKKIAEKKNTIKDIKQSSAKIIAMLGAGDI 431


>gi|251792021|ref|YP_003006741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533408|gb|ACS96654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 438

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 134/394 (34%), Gaps = 54/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + VV +   F          +  + I+A+TG++GKS+V 
Sbjct: 68  IVISPGLAVKTPEIQTALQAGVEVVGDIELF--------CREADKPIVAITGSNGKSTVT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +  GLS    G                        ALS L+ Q      +E S
Sbjct: 120 TLVAEMAKAGGLSVGMGGNIG-------------------IPALSLLNQQH-DLYVLELS 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K +A +  N+  DH++ +   Q Y +AK+++++        A+I  +D
Sbjct: 160 SFQLE--TTYSLKAMAATVLNVTEDHMNRYVDLQDYRHAKLKIYDNC----QTAVINGED 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A +    +R        +S         LK             S+   D      L G  
Sbjct: 214 ALTLPTTQRPQQQ----VSFAENNADYWLKTDGHHTYLMACNESILTID---EMKLSGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A  L  A G++ + +   L +   +  RF+     + G R   D   T+    
Sbjct: 267 NYMNALAAIALAQAAGVNLSGIQTALREFGGLDHRFQLAHM-ADGVRWINDSKATNVGST 325

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       +     +++ G G   D     +   I            D            
Sbjct: 326 VAALTGLQVKGKLHLLLGGDGKGADFS--ELATLINQPHIFCYCFGQDG----------K 373

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++    P         +AI      L   D++++
Sbjct: 374 QLAALSPQSQLFDTMEQAIAAIRLQLQAGDMVLL 407


>gi|33603367|ref|NP_890927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella bronchiseptica
           RB50]
 gi|33577491|emb|CAE34756.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella bronchiseptica RB50]
          Length = 456

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 115/334 (34%), Gaps = 28/334 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++ +S +  I Q       Q  P   I   A D ++   S  Y   
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILQ-----CAQRQPNFLIGGVAPDLQV---SARYAPG 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  ++        +          +R            NL  DH D      A    +  
Sbjct: 153 ARPFVIEADEYDTAFFDKRSKFVHYR-----PRTAILNNLEYDHADIFPDLAAI-ETQFH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P     ++  D    + V++R       V   G  G++           +    
Sbjct: 207 HLVRTVPSNGQLVLPTDAPALERVLER--GCWTPVARFGPGGQWQA----GPADEQGAFE 260

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +SV+G+D     + L GE    NAL A       G+  A  +E L +   V  R E  GT
Sbjct: 261 VSVDGRDAGTVRWTLGGEHNRRNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGT 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
              G R+Y D+AH   ++   ++ +R       I+              +  ++  AL  
Sbjct: 321 -VNGIRVYDDFAHHPTAIATTIEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPEALAG 379

Query: 410 ADIAIVTDDNPRSE----DPEKIRAEIIHGIPGF 439
           AD+     D+        DP ++ A +     G+
Sbjct: 380 ADLVFCFGDHAGKHALGWDPARVLAPLGERAAGY 413


>gi|332290159|ref|YP_004421011.1| UDP-N-acetylmuramate--L-alanine ligase [Gallibacterium anatis
           UMN179]
 gi|330433055|gb|AEC18114.1| UDP-N-acetylmuramate--L-alanine ligase [Gallibacterium anatis
           UMN179]
          Length = 458

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 108/342 (31%), Gaps = 30/342 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I  ++GL    +     IS     +     SP ++ +A  Y ++           +
Sbjct: 123 MLTWILDQAGLEPGFL--IGGISGNFGISARLGKSPFFVIEADEYDTAFFDKRSKFIHYN 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                              N+G DH D     +A    +       +P +   + +AD+ 
Sbjct: 181 ------------PKTLIINNIGFDHADIFDDLKAIQR-QFHHMIRTIPSKGRILSFADET 227

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
             KE +     +  + +    +     L+  C      +  +  + +   +  + + G+ 
Sbjct: 228 SVKETLAMGCWSEQQFIGEDKEWFAKRLRNDC-----TKFEVYHQQQKVAEVEWNIVGQH 282

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            ++NAL+A       G+      + L        R E V     G  +Y D+AH    + 
Sbjct: 283 NMFNALMAIAAAYHAGVSIEQSCKALATFVNANRRLE-VKGEVNGITVYDDFAHHPVEIS 341

Query: 371 MILKNIRTITSG--RIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PE 426
             L  +R    G  RI+ V          G        AL  AD   +       E+ P 
Sbjct: 342 ATLTALRDKVGGGVRILAVLEPRSNTMKMGVHTKELAPALVRADYVFLLQP----ENLPW 397

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++       I   +   +    +   +E     D ++V   G
Sbjct: 398 QVVDIANQCIQPAVWTADIDLLVDKIVEEAQPTDHILVMSNG 439


>gi|257415612|ref|ZP_05592606.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis AR01/DG]
 gi|257157440|gb|EEU87400.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ARO1/DG]
          Length = 456

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +  +++  + 
Sbjct: 168 MELSSFQLM--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAEDTLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       E+   A      VL    +        +       +  I    +       +
Sbjct: 226 WN----QVELQTLAKTTAANVLPFSTKEAVEGAYLLEGKLYFNEEYIMPADE-----LGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSGKDDTILL 424


>gi|114704924|ref|ZP_01437832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fulvimarina
           pelagi HTCC2506]
 gi|114539709|gb|EAU42829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fulvimarina
           pelagi HTCC2506]
          Length = 463

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 108/303 (35%), Gaps = 35/303 (11%)

Query: 66  QGAEAIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            G  A V+S    L      +S  + +   + ++ +   F    AS+         +A+T
Sbjct: 63  NGLAAFVLSPGVPLTHPRPHWSVDLANAAGVPIIGDVEIFGRERASKA---PEARFVAIT 119

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  + +    + +G  +   G                         L+      
Sbjct: 120 GTNGKSTTTALIAHCLKEAGRDTQLGGNIGV-------------------PVLTLQEPTP 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             H  VE SS+ +D     G+K       NL  DH+D H T + Y + K    E L+   
Sbjct: 161 ERHYVVECSSYQIDLA--PGLKPSVALLLNLTADHLDRHGTIEHYASVK----ERLVVGA 214

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDF 300
             A+I ADD + + +  R   AG  V+ +  QG              + +   S    D 
Sbjct: 215 DRAVIGADDIWCRAIADRIEAAGRPVVRISGQGAVAGGVGYADGIVVRALDGFSEASFDL 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             +  L G     NA  A        +  A +L+ L     +  R E VG    G  +++
Sbjct: 275 TGIGSLRGRHNGQNAAAAVAALTLCDVGEAQILKGLRSFPGLAHRMEEVG--RIGKTLFI 332

Query: 361 DYA 363
           + +
Sbjct: 333 NDS 335


>gi|325264801|ref|ZP_08131530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
 gi|324030093|gb|EGB91379.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
          Length = 453

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 105/289 (36%), Gaps = 18/289 (6%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L+++  + +  E SS  L+   +   +    +  N+  DH++ H T +AY +AK+ + E 
Sbjct: 155 LATRDDSVIVAEMSSFQLES--IHTFRPKVSAILNVSPDHLNRHHTMEAYIDAKLNIAEN 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +++  + Y D+         A     +VL    Q K      +   +   ++  +  
Sbjct: 213 QTEEDTCVLNYEDEMT----RGFAEKVNAKVLYFSSQRKLEKGIYMEDGNIICRMDETPV 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L G     N + AAG+  A G+   ++   +++   V  R EFV       
Sbjct: 269 KVCHIDELKLLGTHNHENVMAAAGMAAAYGVPMEIIQRTVKEFQGVEHRIEFVAEKDGVA 328

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                     ++    ++ ++  T     ++ G G D++      +      +  + ++ 
Sbjct: 329 YYNDSKGTNPDAAIKGIQAMKRPT-----LLIGGGYDKESSYDEWIQAFDGKVKKLVLL- 382

Query: 417 DDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    EKI+      G    I      EA+ T ++     D +++
Sbjct: 383 -----GATKEKIKETAERLGFRDIILTDTFEEAVDTCVKYARPGDAVLL 426


>gi|332297816|ref|YP_004439738.1| UDP-N-acetylmuramate/alanine ligase [Treponema brennaborense DSM
           12168]
 gi|332180919|gb|AEE16607.1| UDP-N-acetylmuramate/alanine ligase [Treponema brennaborense DSM
           12168]
          Length = 505

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 113/370 (30%), Gaps = 44/370 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSV 129
           +      +   SA  R   P L   + R   +L  S   G+      +    G  GK++ 
Sbjct: 69  ITDRIDCVVYSSAYDRRTNPDLAEADRRGVPALLYSEALGQLSAAAYSCGIAGVHGKTTT 128

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 I     L +  +   S I+SF             L    +Y  ++   +     
Sbjct: 129 TGLAGTILHELALPAQTL-AGSVIASF---GPAGGDGSCTLTDGHTYFVAETCEYQRHFM 184

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           + H                 T++  DH DY+ T ++  +A +  +   LP     I  AD
Sbjct: 185 AFH-----------PQKIILTSVESDHQDYYPTYESIRDAFVE-YALKLPNGGELIYCAD 232

Query: 250 DAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DA + E  +   +    +L    G Q           + + +Q   S+ G D  F   +P
Sbjct: 233 DAGAAETARSVSSLRPDILLTPYGEQAAGPFCVTFGDVRDGRQY-FSLAGFDRSFYLCIP 291

Query: 308 GEFQVYNALVAAGLCIAI--------GIDSALVLEHL-------------EKLHVVPGRF 346
           G   V NA  AA L   +        G+ +     H+                     R 
Sbjct: 292 GRHLVRNAAAAAALACGLLKEQLRSEGVSAEATPAHVFSARTAEKLAAAFAGFRGGRRRS 351

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKI 405
           E +GT         DY H   ++   L   R    GR +VV F                 
Sbjct: 352 EIIGTAGN-VVFIDDYGHHPTAVRTTLDGYRAFYPGRKLVVDFMSHTYTRTAALLDEFAQ 410

Query: 406 ALDLADIAIV 415
               AD  I+
Sbjct: 411 CFGAADEVIL 420


>gi|33593931|ref|NP_881575.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella pertussis Tohama
           I]
 gi|33598427|ref|NP_886070.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella parapertussis
           12822]
 gi|33564005|emb|CAE43271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella pertussis Tohama I]
 gi|33574556|emb|CAE39203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella parapertussis]
 gi|332383350|gb|AEE68197.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella pertussis CS]
          Length = 456

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 115/334 (34%), Gaps = 28/334 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++ +S +  I Q       Q  P   I   A D ++   S  Y   
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILQ-----CAQRQPNFLIGGVAPDLQV---SARYAPG 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  ++        +          +R            NL  DH D      A    +  
Sbjct: 153 ARPFVIEADEYDTAFFDKRSKFVHYR-----PRTAILNNLEYDHADIFPDLAAI-ETQFH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P     ++  D    + V++R       V   G  G++           +    
Sbjct: 207 HLVRTVPSNGQLVLPTDAPALERVLER--GCWTPVARFGPGGQWQA----GPADEQGAFE 260

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +SV+G+D     + L GE    NAL A       G+  A  +E L +   V  R E  GT
Sbjct: 261 VSVDGRDAGTVRWTLGGEHNRRNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGT 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
              G R+Y D+AH   ++   ++ +R       I+              +  ++  AL  
Sbjct: 321 -VNGIRVYDDFAHHPTAIATTIEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPEALAG 379

Query: 410 ADIAIVTDDNPRSE----DPEKIRAEIIHGIPGF 439
           AD+     D+        DP ++ A +     G+
Sbjct: 380 ADLVFCFGDHAGKHALGWDPARVLAPLGERAAGY 413


>gi|297161285|gb|ADI10997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           bingchenggensis BCW-1]
          Length = 479

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 139/414 (33%), Gaps = 55/414 (13%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QG E IV +  +  S   F A   +  P+    +        A RL G      LAVTGT
Sbjct: 72  QGTELIVTTPGWKPSSPLFLAAAEAGVPVW--GDV-----ELAWRLRGADAPPWLAVTGT 124

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  I + +GL +  +G                        +L  +      
Sbjct: 125 NGKTTTVRMLAAILEAAGLRTAAVGNIGV--------------------SLLDVVLGDEP 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +         H    ++  +G+  NL  DH+D+H +  AY   K R++E    + + 
Sbjct: 165 YDVLAVELSSYQLHWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYEG--NQVAC 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
               AD A    V       GCR +             V       +  ++   K    L
Sbjct: 223 VYNVADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFVANRQKQAQEL 282

Query: 304 -----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   P    + NAL AA L  A G+    V + L      P R E V   +  G  
Sbjct: 283 AEVSDVNPPAPHNIANALAAAALARAFGVPPTAVRDGLRAFRPDPHRVEHVADVA--GVA 340

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVD +  +N+         ++ S   IV    G  +      ++   A  L  + ++  D
Sbjct: 341 YVDDSKATNT----HAAQASLDSFEHIVWIAGGLAKGATFDELVVASAKRLRGVVLIGAD 396

Query: 419 NPRSEDPEKIRAEIIHGIPGF-IEKGNRIE------AIRTAIEMLNKQDVLVVA 465
                    I   +        +   +R +      A+R A  +    D +++A
Sbjct: 397 R------ALIGEALARHAADVPVVDLDRTDTGAMAAAVREAARLARPGDTVLLA 444


>gi|194290815|ref|YP_002006722.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224650|emb|CAQ70661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 519

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 106/307 (34%), Gaps = 39/307 (12%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L+      +   A +  N+ +DH+D+H + +AY  +K R+F        
Sbjct: 192 EVWVLELSSFQLE--TTHTLAPHAATVLNVTQDHLDWHGSMEAYAASKARIF-GPAGHAC 248

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVL-------SVGY------------------QGKFI 277
             ++  +D  + ++ +         +       S G                   +G+  
Sbjct: 249 VQVLNRNDRLTLDMARPGSTPVTFGIDLPEVPGSFGILREGGMPWLVLAEPDPDAEGEGK 308

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              +  A   ++ V +  +         + G     NA+ A  LC AI +    +L  L 
Sbjct: 309 PRGRKAAEAVQEAVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDLPMNALLHGLR 368

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +    P R E+V T       Y D +  +N +   +  +  +     +V+   G  + Q 
Sbjct: 369 EYRGEPHRVEWVATIDDVE--YFDDSKGTN-VGATVAALSGLDK--RVVLIAGGEGKGQD 423

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             P+   +A     + ++           ++R  +       ++     EA+  A  +  
Sbjct: 424 FSPLAAPVAQYARAVVLI------GRAAAELRDALQGSGATLVDAATLEEAVTQAAGLAE 477

Query: 458 KQDVLVV 464
             D +++
Sbjct: 478 AGDAVLL 484


>gi|241205559|ref|YP_002976655.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859449|gb|ACS57116.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 470

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 35/290 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +    ++  +     + +V +   F+     R         +A+TGT+GKS+  + +  I
Sbjct: 79  HPKPHWTVDLARAAGVDIVGDVELFVRE---RRAHAPDCPFIAITGTNGKSTTTALIAHI 135

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +G  +   G   T                     L+    +   +  VE SS+ +D 
Sbjct: 136 LKSAGYDTQLGGNIGT-------------------AVLTLDPPKAERYYVVECSSYQIDL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +   AG   NL  DH+D H T Q Y + K RL          AI+  DD++S  +
Sbjct: 177 A--PTLDPSAGILLNLTPDHLDRHGTMQHYADVKERLVAG----SDVAIVGIDDSHSALI 230

Query: 257 MKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             R   AG +V+ +  +      I+ +    I       +     D D +  L G     
Sbjct: 231 ADRVERAGVKVVRISRRNVVADGIYAEGTRLIKAAGGAML--PFVDLDGIQTLRGSHNAQ 288

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           NA  A   C+A+G+ +  +         +  R + VG   RG  ++V+ +
Sbjct: 289 NAAAAVAACLAVGVSADDIRAGFASFPGLKHRMQPVG--QRGRVVFVNDS 336


>gi|294787087|ref|ZP_06752341.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315226740|ref|ZP_07868528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
 gi|294485920|gb|EFG33554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315120872|gb|EFT84004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
          Length = 510

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 129/397 (32%), Gaps = 39/397 (9%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            +       PIL            A       P   + +TGT+GK+S      +I Q +G
Sbjct: 81  LTKAAAQGLPIL--SEVEFAWQTRAINPQTGQPAVWVGITGTNGKTSTTEMTSEILQAAG 138

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +  +G                PS  YL   LS                     H  D 
Sbjct: 139 YQAPAVGNIGV----PVSQAAQDPSNRYLVVELSSFQ-----------------LHYTDD 177

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + L   + TNL  DH+D+H   + Y   K +++  +       +  ADD       + A 
Sbjct: 178 LALAGAAITNLADDHLDWHGGFENYAADKAKVYSGV---SQVLVYNADDPRVSAKAREAR 234

Query: 262 NAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFP---LPGEFQV 312
            A  CR +    +        +          +  +G+     DF  L           +
Sbjct: 235 PAPGCRRVGFSLEAPQPGTIGIDQGWIVNLSPVGPQGRLAPVTDFPHLCEPDGTVYPHLL 294

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--GGRIYVDYAHTSNSLE 370
            +AL A  L + +G+D  + ++ L        R + V +      G+I      +  +  
Sbjct: 295 ADALTALALALGLGVDCQVAVKALSSFAPGGHRIQKVASYQDPSNGKIIRFVDDSKATNA 354

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIR 429
                  +    + +V    G  +      ++ +    +    ++  D    E+  E   
Sbjct: 355 HAAAASLSSFPRKSVVWIAGGLAKGAEFSSLVSRQREVIKAAVVIGQDQSLMEEALETQA 414

Query: 430 AEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVA 465
            +I + +    +KG     AI+ A   ++  DV+++A
Sbjct: 415 PDIPYTLIDPADKGTVMARAIQAATAYVHGGDVILLA 451


>gi|331090022|ref|ZP_08338912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330402936|gb|EGG82502.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 447

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH++ H T +AY  AK R+ E     +   + Y
Sbjct: 161 EISSFQLE--TIHTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLNY 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD    E+ K       +VL      K      +          + VE  D      + 
Sbjct: 219 EDD----ELQKFGEKTAAQVLYFSSARKLEKGIYLDGTKIICAADVPVELCDVS-ELKIL 273

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A+ +  A G+   ++ ++L     V  R EFV      G +Y + +  +N
Sbjct: 274 GTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVEHRIEFVAEKR--GVLYYNDSKGTN 331

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +  +K I+ +    I++  G G D+D      +      +  + ++          EK
Sbjct: 332 P-DAAIKGIQAMNRPTILI--GGGYDKDSEYDEWIKAFDGKVRKLVLL------GATREK 382

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      +G    I      EA    ++     D +++
Sbjct: 383 IAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLL 420


>gi|34558797|gb|AAQ75142.1| UDP-MurNac-pentapeptide presynthetase [Alvinella pompejana epibiont
           6C6]
          Length = 475

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 101/304 (33%), Gaps = 36/304 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VT + GK+S+ +F+  +  +           +T+    +D        I +     
Sbjct: 159 KVIGVTASYGKTSIKNFIAHLLSKKYRVYATPRSVNTLGGVIRDINENLDEKIQIY---- 214

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    V + A   G        +         +G  HI+Y ++ +   + KM +  
Sbjct: 215 --------VVEMGARERGDILEITQLVNPHYAIVGQIGTAHIEYFKSLENIRDTKMEII- 265

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                           +SK ++K       +  ++    K                 I  
Sbjct: 266 ----------------HSKRLIK---AFVHKSANIKPNEKVEVFGDEIEDIKADLNGIEW 306

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D  +  P+ G F   N  VA  +    G+    V E L+ L   P R + +     G
Sbjct: 307 RVGDRIYRAPILGSFNATNLTVAIKIAKLFGMSDDEVQERLKSLKQTPHRLQRIDA---G 363

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G+I +D +   N   MI       T  GR +++     + D+     + K A  + D+ I
Sbjct: 364 GKIIIDDSFNGNIDGMIEAFKLASTHSGRKVLITPALVEVDRELNEKVAKEANRIFDLVI 423

Query: 415 VTDD 418
           +T +
Sbjct: 424 ITSE 427


>gi|325106851|ref|YP_004267919.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967119|gb|ADY57897.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           brasiliensis DSM 5305]
          Length = 443

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 134/405 (33%), Gaps = 76/405 (18%)

Query: 68  AEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            +A+++S           A +    P+L        + LF      ++P  +LAV+GT G
Sbjct: 77  CDAVLISPGIRPNHPCVQAAVEEGIPVLTE------MQLF----LERNPAPVLAVSGTVG 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + +  + + SG S    G      S   +     P  + + +  S+         
Sbjct: 127 KSTVTTMLAHVLKESGRSVHVGGNLGL--SLLPELDCIQPDDVVVLELSSFQLH------ 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                     Q R +G+       TNL   H+++H +   Y  AK     +++     A 
Sbjct: 179 -----WLQEMQPRFEGV-----IVTNLFPHHLEWHGSSGEYETAK-----QVMLAGQQAQ 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            +A      ++              G+QGK      V  +             +      
Sbjct: 224 DWAVLPAELQLRP------------GWQGKAETGSPVNVVALS----------EVSVPSD 261

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            P      N        + +G+  A   E L+    +P R + V    +G RI  D   T
Sbjct: 262 WPL-HWQENTASVLAAAVRLGVSPAQAAECLKSYQGLPHRLQQVRIW-QGRRIIDDSKAT 319

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S    L  +R +      ++ G     D        ++   L D+ ++         P
Sbjct: 320 --SPWATLAGMRAMRE-SFWLILGGAASSDDP-----AELLAALPDVPLLRGIALMG--P 369

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 E +R  +  G+    +  ++ EA R A +     + +++
Sbjct: 370 GGKLWGEAVRRAVEAGVQ-VEQFESQHEACRWAAKASQAGETILL 413


>gi|152980991|ref|YP_001354657.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
 gi|151281068|gb|ABR89478.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
          Length = 457

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 117/366 (31%), Gaps = 34/366 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
             + +LAV GT GK++ +S +  I + +G     +  G        A+ +     S  ++
Sbjct: 101 QGKWVLAVAGTHGKTTTSSMLAWILEDAGYDPGFLIGGVPMNFGISARLSGSGKESSFFV 160

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A  Y ++                               NL  DH D      A    +
Sbjct: 161 IEADEYDTAFFDKRSKFVHYH------------AKTAILNNLEYDHADIFPDLHAI-ETQ 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                  +P     I    +A  + V++R     C   S  + GK        A H+   
Sbjct: 208 FHHLVRTVPGVGRVIANGREASLQRVLQRG----CWSESEWFGGKEGW---SLATHDDGN 260

Query: 291 VTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   G+      + L GE    NAL A      +G+  A  +  L +   V  R E  
Sbjct: 261 FDVIFNGELQGTVQWSLTGEHNRMNALAAIAAARHVGVLPAQAIAALGQFENVKRRMELR 320

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT  +   +Y D+AH   ++   ++ +R       I+              +   +   L
Sbjct: 321 GT-VKDIAVYDDFAHHPTAIATTVEGLRKKVGKARILAVLEPRSNTMKLGTMKEALPGSL 379

Query: 410 ADIAIV-------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  ++          +    D  +  A +      F +    ++AI    +     D +
Sbjct: 380 VDADLIFGYGASGNGKDALGWDLAEALAPLGEKARSFNDLPTLVQAIA---QSAQAGDQV 436

Query: 463 VVAGKG 468
           +V   G
Sbjct: 437 LVMSNG 442


>gi|161899277|ref|XP_001712865.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
           [Bigelowiella natans]
 gi|75756359|gb|ABA27253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
           [Bigelowiella natans]
          Length = 550

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 80/463 (17%), Positives = 153/463 (33%), Gaps = 82/463 (17%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
           +D+S T       +++    K  S F  +     P+ I  + +TG  GK+SV+  ++   
Sbjct: 48  EDYSVTPAQKN--ILIPTINKVASSFLFKNTNPSPKKIFNILITGNFGKTSVSYILKYFF 105

Query: 138 QRSGLSSFQIGPTS-TISSFAQDNR---------------------------LTTPSPIY 169
             S      I   S T   +  D                                P+  +
Sbjct: 106 DFSKFKYISINTHSSTFLKYNFDINGNLHENEHLSFKKRFINNSFKKKYLIAQKNPNEFH 165

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L K L   S+      S+E   + + +  L   +      T      + Y  +       
Sbjct: 166 LFKILKCTSNNQAQICSLELDLNSIYRRHLFFFQPNITILTTF----LSY--SFDKTLEK 219

Query: 230 KMRLFEEL-LPKESPAIIY------ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           K+ L ++L L + S   I        DD  +K +    +       S+      IH  K+
Sbjct: 220 KLVLLKQLYLKEFSKNDINTSFVLSKDDDITKSMAITLNMRNFVFFSLVDSESDIHANKI 279

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  Q+ I     +F     L G+  ++N L          I    +   +E++  +
Sbjct: 280 IYSIWGTQLNIKSNENEFFLETKLIGKHNMHNLLQCYTFSFFSKIPLPYIQFCIEEIDNI 339

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +    +   + +DYA T   +  ++ +I      + + +          +  + 
Sbjct: 340 PNRLEKIDV-GQNFNLLIDYADTPEGIVNLIGSIYESCFIKTLTIISGKSSYSTHENKLF 398

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---------------------- 440
            K  LD +    +T +NP+  + + I  E++ G+P FI                      
Sbjct: 399 LKHLLDSSKKLFLTANNPKWFNNKLILNEVLMGLPDFIKYSHSGSVYDWFFDVQRIPLWF 458

Query: 441 --------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                            +R  A++  + M  K+DV++V G+G 
Sbjct: 459 EYWFYKYQDDLGCYVIDDRDVALKICLSMAGKEDVVLVTGRGD 501


>gi|317501229|ref|ZP_07959434.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897405|gb|EFV19471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 454

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH++ H T +AY  AK R+ E     +   + Y
Sbjct: 168 EISSFQLE--TIHTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLNY 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD    E+ K       +VL      K      +          + VE  D      + 
Sbjct: 226 EDD----ELQKFGEKTAAQVLYFSSARKLEKGIYLDGTKIICAADVPVELCDVS-ELKIL 280

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A+ +  A G+   ++ ++L     V  R EFV      G +Y + +  +N
Sbjct: 281 GTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVEHRIEFVAEKR--GVLYYNDSKGTN 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +  +K I+ +    I++  G G D+D      +      +  + ++          EK
Sbjct: 339 P-DAAIKGIQAMNRPTILI--GGGYDKDSEYDEWIKAFDGKVRKLVLL------GATREK 389

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      +G    I      EA    ++     D +++
Sbjct: 390 IAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLL 427


>gi|228474999|ref|ZP_04059727.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|314936655|ref|ZP_07844002.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
 gi|228270984|gb|EEK12372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|313655274|gb|EFS19019.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
          Length = 448

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 101/267 (37%), Gaps = 24/267 (8%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++  +      TN+   H+DYH++ + Y NAK R+++     +     Y    Y +  + 
Sbjct: 175 IEHYRPHIAIITNIYSAHLDYHESLENYQNAKRRIYKNQTEDD-----YLICNYHQRHLI 229

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALV 317
              N   + L    Q      ++V  I+ K    +       +     LPGE  + N L 
Sbjct: 230 ETENLKAKTLYFSTQ------QEVDGIYIKDNYIVYNNVNLINIDDLVLPGEHNLENILA 283

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    I  G+    +++ L     +  R +++GTN      Y + +  +N+L      + 
Sbjct: 284 AVLAAILAGVPIKAIVDSLTTFSGIEHRLQYIGTNRTNK--YYNDSKATNTLATQF-ALN 340

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +     I +    G DR  G   ++  +      + +V       E  +K          
Sbjct: 341 SFKQPIIWLC--GGLDRGNGFDELIPYM--KHVRVMVV-----FGETQDKFAKLGNSQGK 391

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I+  +  +A++   +++   DV+++
Sbjct: 392 EVIKAVDIEDAVKKVQDVIEPNDVVLL 418


>gi|116512399|ref|YP_809615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris SK11]
 gi|122940065|sp|Q02XX9|MURD_LACLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116108053|gb|ABJ73193.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 449

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 114/287 (39%), Gaps = 26/287 (9%)

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q    + +E SS  L    +D  +      TNL   H+DYH +Q+AY  AK R+ E +  
Sbjct: 159 QATDTLVMELSSFQLM--GIDTFRPKIALITNLFSAHLDYHGSQEAYEAAKWRIQENMTA 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   + +      ++  K A      VL+   + K        A  N+ ++    E   
Sbjct: 217 DDFLILNFN----QEKCRKLADKTKATVLAFSTKEKVSG-----AYVNEGKIYFKDEFIM 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 LPG+  + NAL A       G ++  ++E L     V  R +++G    G ++Y
Sbjct: 268 EASELSLPGDHNLENALAAIVASKLRGAENEAIIEVLTSFAGVKHRLQYLG-EIDGRKVY 326

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV--TD 417
            D   T+  +    K +    + ++ +    G DR  G   +   +  DL  + +   T 
Sbjct: 327 NDSKATN--ILATQKALSGFDNSKLWL-LAGGLDRGNGFEDLEKDL-EDLKGMVVFGQTA 382

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  R      + AE ++ IP F  + N   A++  +      D +++
Sbjct: 383 DKLR------LMAEKLN-IPVFASQ-NVATALKEIMPQTQVGDTILL 421


>gi|218249332|ref|YP_002375315.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226321282|ref|ZP_03796810.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
 gi|218164520|gb|ACK74581.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226233314|gb|EEH32065.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
          Length = 468

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 139/418 (33%), Gaps = 52/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           IV SSAY+       + +   N PIL      + L   + + Y       + + G+ GK+
Sbjct: 76  IVYSSAYNKDGLQVLLEAKELNIPILSYP---EALGELSRKYY------SIGIAGSHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +F+  +  + GL+   I   S++  F  ++ +   S I++ +   Y +       ++
Sbjct: 127 TTTAFLGVLFNKLGLNPNVI-VGSSVKDFKDNSAIAGISNIFIVETCEYKNHFLNFSPNM 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A ++ +   L K    II 
Sbjct: 186 L-------------------ILTNVDYEHVDFFKNYEALEEAFLQ-YINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD    ++ ++ +     + S G  G     +        +    S  G   +      
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYG-SGDLSDFQISNIAVRSEYFCFSFLGL-LNVELKTV 283

Query: 308 GEFQVYNALVAAGLCIAIG-------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               V N   A                D    ++ + K +    R   V     G     
Sbjct: 284 LFHNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMD 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV---- 415
           DYAH    ++  L  I+     + I++ F         +        L  ADI I+    
Sbjct: 344 DYAHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSDADILILHNIY 403

Query: 416 ----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 404 LSNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|83589397|ref|YP_429406.1| FolC bifunctional protein [Moorella thermoacetica ATCC 39073]
 gi|83572311|gb|ABC18863.1| FolC bifunctional protein [Moorella thermoacetica ATCC 39073]
          Length = 440

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 131/411 (31%), Gaps = 73/411 (17%)

Query: 107 SRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSF 156
            R  G   E +  + + GT+GK SV++ V  I + +G                   I+  
Sbjct: 29  MRRVGSPQERLRFIHIGGTNGKGSVSAMVASILKAAGYRVGLFTSPHLHSYTERIQINGQ 88

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR-----LDGIKLIAG---- 207
                       +    L+ + + G  H +       +         +D + L  G    
Sbjct: 89  NIPEERLAALLTWFKPLLTAMVADGYEHPTEFEVGTAVALKYFADEGVDLVVLEVGLGGA 148

Query: 208 -------------SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                          TN+G DH+ Y   T       K  + +                  
Sbjct: 149 IDSTNVINTSLVSVITNVGMDHMQYLGNTIAEIARVKAGIIK---------------PGG 193

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------- 303
             V          V+S   + K   L +V      ++  +S+ G +FD            
Sbjct: 194 IVVTASRLPEALEVISTTCREKGATLYQVGRDVTWRERRVSLAGGEFDCRGLLATYEGLK 253

Query: 304 FPLPGEFQVYNALVAAGLCIA------IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             L G  Q+ NA  A  +  A      + +    + + L        R E +    R   
Sbjct: 254 VHLLGRHQLENAATAVAVIEAAVRHHGLKVTPDHLRQGLAAATWP-ARLEII---QREPM 309

Query: 358 IYVDYAHTSN-SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + +D AH  + ++ + L         R+I+V G   D++   R  +  +   LA   IVT
Sbjct: 310 VIIDGAHNFDGAVSLRLALEEIFRYRRLILVLGMLADKE---REKVVAVLAPLAAAVIVT 366

Query: 417 -DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +NPR+ + + +   +   +           A+  A+ +    D++ V G
Sbjct: 367 RPNNPRAGNWQSLADSVRRYVGVVEVIEAIPAAVERALALAEPSDLICVTG 417


>gi|167614184|gb|ABZ89690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 440

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 128/350 (36%), Gaps = 45/350 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+++TGT+GKS+VA+ V++I ++SG   F  G                         + 
Sbjct: 107 PIISITGTNGKSTVATMVKKIAEKSGYKVFLGGNIG--------------------FPVL 146

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLF 234
            + +Q      +E SS  L+      +K       N+  DH+D +    + Y   K+ ++
Sbjct: 147 EMLNQKANLYILELSSFQLE--TTFSLKSKIAVVLNITEDHLDRYPEGFEQYKKIKLSIY 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +               +  +  K      C+  +        + K+   ++ K +  + 
Sbjct: 205 NQAEICLIKLKKGGKKPFDTQFKKYISFGICQNNNYHIN----YEKEKAILYCKNKKVLD 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G     NAL++  +  A+  +  + +  L++   +P RF+ V  N+ 
Sbjct: 261 TSN------MFLNGYHNYENALISLAISDAMKFNREIAINTLKQFSGLPHRFQTVHINNN 314

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    +   +S ++ L+N+     G I ++   GGD       I+ +    L     
Sbjct: 315 ISWINDSKSTNVDSTKVALQNLNI--KGTIWLLL--GGDGKSSNFNILKEYFEKLKIKIY 370

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  S       +++      ++E     +AI    + +   DV+++
Sbjct: 371 CFGKDGLS------LSKLCKKKSVYVETL--KQAIILISKKIQPGDVVLL 412


>gi|328949820|ref|YP_004367155.1| FolC bifunctional protein [Marinithermus hydrothermalis DSM 14884]
 gi|328450144|gb|AEB11045.1| FolC bifunctional protein [Marinithermus hydrothermalis DSM 14884]
          Length = 413

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 138/393 (35%), Gaps = 52/393 (13%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +L A   + +     + V GT+GK SV   +  I + +G   +++G  ++      + R+
Sbjct: 22  ALLARLGHPERAFPAVVVGGTNGKGSVTRALGGILEAAG---YRVGVYTSPHLVRFNERI 78

Query: 163 TTPSPIYLAKALSYLSSQGVTH--------------------------VSVEASSHGLDQ 196
                      L+ L  +   H                           +V     G   
Sbjct: 79  RVGGEEIQDAELAALLEEVRPHAEAVGASYFEVATVLALVHFARRGVDWAVLEVGMGGRF 138

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              + +  +    TN+G DH  +   T       K      +L     A+  A     + 
Sbjct: 139 DATNAVDPVLSVITNVGLDHQRWLGATLAQIAREKA----GILRPGRSALTAARGEGLRV 194

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + + A   G R+L +G   +   L+ V         T++ EG+      P+ G  Q  N 
Sbjct: 195 LREEAGRVGARLLVLG---EAFALEGVALGPEGVAFTLAYEGR-HRLRAPVLGAHQAENL 250

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +AA     +G+  A V   LE+     GR E++       R+ +D AH  +    + + 
Sbjct: 251 ALAAVAARRLGVGWAAVRSGLERFMHP-GRMEYLPER----RLLLDGAHNPDGARALGRA 305

Query: 376 IRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEII 433
           +    SG    +V     D+D            +  +  +VT    PR+ DP  + A   
Sbjct: 306 LEAHFSGWPRTLVLALSEDKDPRA---FAAAFRECFERVVVTRYAAPRAMDPAALHA--- 359

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              PG        +A+  A+ +   + ++VVAG
Sbjct: 360 -HFPGAEVVEESAKALERALAVTPPEGLVVVAG 391


>gi|226328330|ref|ZP_03803848.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
 gi|225203063|gb|EEG85417.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
          Length = 436

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 148/406 (36%), Gaps = 60/406 (14%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA    A+ I+ S   +L   +    +N  + +V +   F          +    I+A+T
Sbjct: 60  QAWLNDADLIISSPGIALSTPALVEAANHGVEIVGDIELF--------CREAKAPIVAIT 111

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GKS+V + V ++    G+     G                        AL+ L+   
Sbjct: 112 GSNGKSTVTTLVGEMASADGIRVGVGGNIGV-------------------PALTLLTEPH 152

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPK 240
                +E SS  L+      +K  A +  N+  DH++ +    + Y  AK+R+++     
Sbjct: 153 -DLYVLELSSFQLE--TTYSLKAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDN---- 205

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +   DDA +  +  +      R +S G       L  +  I       + V+G+  
Sbjct: 206 AKACVYNEDDALTLPLAGK----DNRCVSFGVGQGDYQLDNINRI-------LKVKGEKV 254

Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G+    NAL A  L  A+GI     +E L+  H +  RF+ V ++     I
Sbjct: 255 LSTAEMYLSGQHNYTNALAALALADAVGISRKATIEVLKTYHGLAHRFQLVYSHQNVRWI 314

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               A    S E  L+ +     G + ++   G  +      ++  I+ D   +     D
Sbjct: 315 NDSKATNVGSTEAALRGLE--VEGTLHLLL-GGDGKSADFTSLLPYISGDNIRLYCFGQD 371

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +    +R ++       +      EA+R     +   D++++
Sbjct: 372 ---GQALANLRPDV------SLLTVTMEEAMRALAPTVKSGDMVLL 408


>gi|153814610|ref|ZP_01967278.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
 gi|145848104|gb|EDK25022.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
          Length = 454

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH++ H T +AY  AK R+ E     +   + Y
Sbjct: 168 EISSFQLE--TIHTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLNY 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD    E+ K       +VL      K      +          + VE  D      + 
Sbjct: 226 EDD----ELQKFGEKTAAQVLYFSSARKLEKGIYLDGTKIICAADVPVELCDVS-ELKIL 280

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A+ +  A G+   ++ ++L     V  R EFV      G +Y + +  +N
Sbjct: 281 GTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVEHRIEFVAEKR--GVLYYNDSKGTN 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +  +K I+ +    I++  G G D+D      +      +  + ++          EK
Sbjct: 339 P-DAAIKGIQAMNRPTILI--GGGYDKDSEYDEWIKAFDGKVRKLVLL------GATREK 389

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      +G    I      EA    ++     D +++
Sbjct: 390 IAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLL 427


>gi|125623755|ref|YP_001032238.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|158512796|sp|A2RJQ3|MURD_LACLM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|124492563|emb|CAL97506.1| MurD protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070524|gb|ADJ59924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 449

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 114/287 (39%), Gaps = 26/287 (9%)

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q    + +E SS  L    +D  +      TNL   H+DYH +Q+AY  AK R+ E +  
Sbjct: 159 QATDTLVMELSSFQLM--GIDTFRPKIALITNLFSAHLDYHGSQEAYEAAKWRIQENMTA 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   + +      ++  K A      VL+   + K        A  N+ ++    E   
Sbjct: 217 DDFLILNFN----QEKCRKLADKTKATVLAFSTKEKVSG-----AYVNEGKIYFKDEFIM 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 LPG+  + NAL A       G ++  ++E L     V  R +++G    G ++Y
Sbjct: 268 EASELSLPGDHNLENALAAIVASKLRGAENEAIVEVLTSFAGVKHRLQYLG-EIDGRKVY 326

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV--TD 417
            D   T+  +    K +    + ++ +    G DR  G   +   +  DL  + +   T 
Sbjct: 327 NDSKATN--ILATQKALSGFDNSKLWL-LAGGLDRGNGFEDLEKDL-EDLKGMVVFGQTA 382

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  R      + AE ++ IP F  + N   A++  +      D +++
Sbjct: 383 DKLR------LMAEKLN-IPVFASQ-NVATALKEIMPQTQVGDTILL 421


>gi|150020386|ref|YP_001305740.1| Mur ligase middle domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149792907|gb|ABR30355.1| Mur ligase, middle domain protein [Thermosipho melanesiensis BI429]
          Length = 511

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 126/366 (34%), Gaps = 31/366 (8%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A R   +    ++A+TG+ GK+S   ++  +      +    G  +T     +  R    
Sbjct: 159 AKRKIKRLNPEVVAITGSYGKTSTKFYLYHLISEYYKTLMTPGSYNTTMGITKVIREKLD 218

Query: 166 SPIYLA-KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
               +    L+   + G                 LD +       T++G  H +  + + 
Sbjct: 219 KSHDVFIVELAENDNYGFE-------------KLLDLVNPTISVITSIGIQHFEEFENES 265

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              +   +  ++        ++  DD   ++++K   N       +  +     +  +  
Sbjct: 266 NILDNFKKYIKD-SRSGKKFVVNFDDENIRKIIK---NKDIISCGIENKEAQYRIVDLKL 321

Query: 285 IHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +     +     + F+F   + G+  V + L+A      + +    ++E  + +    
Sbjct: 322 DKDGSNFVLETPNNQKFEFTTNVYGKENVLDLLLAIVTAFELKVPVEEIIERAKNIVKPK 381

Query: 344 GRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKR 399
            R E +        +  D +       +M L+ +      R I++   F   G+++  + 
Sbjct: 382 HRLEVI--RDDTITVIDDTFNSNPKGFKMALEYLSLFGKRRKILITPGFVELGEKEDEEH 439

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIE-MLN 457
             +GK+     D+  +  D  R+   +KI   +      G I   N ++ +   ++  L 
Sbjct: 440 YKLGKLISKYVDVVFLV-DKKRT---KKILEGLEDSNFTGEIYTVNSLDEVTEMLKTFLK 495

Query: 458 KQDVLV 463
             DV++
Sbjct: 496 SGDVVL 501


>gi|28211898|ref|NP_782842.1| dihydrofolate synthase [Clostridium tetani E88]
 gi|28204341|gb|AAO36779.1| folylpolyglutamate synthase [Clostridium tetani E88]
          Length = 431

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 136/388 (35%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S+ S +  I   SG                   I+             
Sbjct: 40  KCIHIAGTNGKGSITSMITSILIESGFKIGMYTSPYIEEFEERIQINRENIPKSDLAYYT 99

Query: 168 IYLAKALSYLSSQGVTH---------------------VSVEASSHGLDQHRLDGIKLIA 206
             +++A+  + S G  +                      ++     G      + IK + 
Sbjct: 100 TIVSEAIEKVVSMGWGYPTEFEIITCIMFLYYSKKEIDYAIIEVGLGGKSDSTNVIKPLV 159

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH+     T +   + K  + +E +P     I+Y  +  + +V+++      
Sbjct: 160 SIITSISYDHVSILGNTIEEIASEKAGIIKENVP----VILYPQEEGAYKVIEKTCMEKD 215

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L    +    H+       + Q + I     ++     L G  Q  N  VA      +
Sbjct: 216 SKLIYIDENSIYHIPNEDFNKSYQFLQIKTNKDEYKVQLSLLGSHQRMNCAVAIYAIEQL 275

Query: 326 -----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
                 I    +L  L  +    GR E + TN     + +D AH  + +  + ++I+   
Sbjct: 276 MQIGIKIKKEDILRGLSNVQWP-GRLEILKTN---PLVVIDGAHNLDGITKLKESIKQYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+D      M +    +A+  I VT ++ R +  +++   I +    
Sbjct: 332 RYNKLILIIGILTDKDIQ---KMVRTITPIANKVIAVTPNSYRGKTSQELIKTIENYNKN 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  EA   A+   ++ D++++ G
Sbjct: 389 CEALEDYKEAYVKALAYCDEDDMILICG 416


>gi|15602794|ref|NP_245866.1| hypothetical protein PM0929 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721249|gb|AAK03013.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 457

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 90/269 (33%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G DH D     +A    +       +P     +  A++   K  +     +  + 
Sbjct: 185 IINNIGFDHADIFDDLKAIQR-QFHHMIRTMPASGRILSVANEPNVKATLDMGCWSQQQF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326
           L     G+          H+  Q  +  +G+   +  + + G+  ++NAL+A      +G
Sbjct: 244 L-----GQDQDWYAERISHDCTQFGVFYQGEKMAEVYWNVVGQHNMHNALMAIAAAHHVG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           I  A   + L        R E V     G  +Y D+AH    +   L  +R    G  RI
Sbjct: 299 ISIAEACQALATFISPKRRLE-VKGQVNGITVYDDFAHHPTEILATLTALRDKVGGGVRI 357

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           + V          G        AL  AD   +         PE I  +++  +   ++  
Sbjct: 358 LAVLEPRSNTMKMGVHKDEIAPALGRADNVFLFQ-------PENIGWDVVDIVSQCVQPA 410

Query: 444 ----NRIEAIRTAIEMLNKQDVLVVAGKG 468
               N  + +    +     D ++V   G
Sbjct: 411 VWNMNLDKLVEMIADEAKPTDHILVMSNG 439


>gi|84490005|ref|YP_448237.1| UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera stadtmanae
           DSM 3091]
 gi|84373324|gb|ABC57594.1| predicted UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 489

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 153/434 (35%), Gaps = 38/434 (8%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I  A  +G   ++  + +     S     N  ++V ++     +   + +  ++ E+   
Sbjct: 52  IEIANEKGVSCLITQNPHD-DAISMAKALNFSLIVTEHIEYATAFALNTIVKEYAEDSFK 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK----- 172
           +AVTGT+GKS+    +  I       ++      +  +   D R+ +    Y  K     
Sbjct: 111 VAVTGTNGKSTTTHLLYTIFSDFNYDTYTNTDAESEGNTLIDPRVASELSDYYHKNNNID 170

Query: 173 --ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L     QG         +H     R   +   +   TN   DHI+  ++        
Sbjct: 171 VITLEVSEVQGWD--DEIMKNHSNKMIR--ALDADSVIITNASMDHINLVKSFDNLLYEI 226

Query: 231 MRLFEELLPKESPA--IIYADDAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHN 287
               + LL  +  +  ++  +D   + +     N     V+  G          + ++  
Sbjct: 227 SGAAKALLNGDKESLLVLNYEDENIRNMANIVSNQSNINVMFFG----NYDENNILSVSY 282

Query: 288 KQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           K+ V I    + +     LP      + + + A  +CI   +D   V+E L+    +  R
Sbjct: 283 KEGVGIYSGNELYVEQKDLPFNSIHFIQDIMAALAVCIYRNMDRGRVIESLKNYKPLARR 342

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           F  +  N     I  D+AH  + + + ++N   + +   IV    G   D   R I   +
Sbjct: 343 FIKLREN---PIIIDDFAHNPSGINLTIENGSKLGNNLFIVNAIRGSRGDDINREIAEAL 399

Query: 406 ALDLAD-----------IAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAI 453
              L D           + +V   N   +  + I  EI+      F+   +  E++   +
Sbjct: 400 VKSLKDRDNYTLLLTCSVDVVNHLNTVVDSEKNIFLEILEENNIHFMLFESLEESLLNVV 459

Query: 454 EMLNKQDVLVVAGK 467
            + +  DV+++ G 
Sbjct: 460 NLASDDDVILLLGA 473


>gi|312149248|gb|ADQ29319.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi N40]
          Length = 468

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 138/418 (33%), Gaps = 52/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           IV SSAY+       + +   N PIL      + L   + + Y       + + G+ GK+
Sbjct: 76  IVYSSAYNKDGLQVLLEAKELNIPILSYP---EALGELSRKYY------SIGIAGSHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +F+  +  + GL+   I   S++  F  ++ +   S I++ +   Y         ++
Sbjct: 127 TTTAFLGVLFNKLGLNPNVI-VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNM 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A ++ +   L K    II 
Sbjct: 186 L-------------------ILTNVDYEHVDFFKNYEALEEAFLQ-YINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD    ++ ++ +     + S G  G     +        +    S  G   +      
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYG-SGDLSDFQISNIAVRSEYFCFSFLGL-LNVELKTV 283

Query: 308 GEFQVYNALVAAGLCIAIG-------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               V N   A                D    ++ + K +    R   V     G     
Sbjct: 284 LFHNVLNFSAALLALNLFLESNGRSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMD 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV---- 415
           DYAH    ++  L  I+     + I++ F         +        L  ADI I+    
Sbjct: 344 DYAHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSDADILILHNIY 403

Query: 416 ----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 404 LSNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|195941973|ref|ZP_03087355.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi 80a]
 gi|224532449|ref|ZP_03673075.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
 gi|224512621|gb|EEF82996.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
          Length = 468

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 138/418 (33%), Gaps = 52/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           IV SSAY+       + +   N PIL      + L   + + Y       + + G+ GK+
Sbjct: 76  IVYSSAYNKDGLQVLLEAKELNIPILSYP---EALGELSRKYY------SIGIAGSHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +F+  +  + GL+   I   S++  F  ++ +   S I++ +   Y         ++
Sbjct: 127 TTTAFLGVLFNKLGLNPNVI-VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNM 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A ++ +   L K    II 
Sbjct: 186 L-------------------ILTNVDYEHVDFFKNYEALEEAFLQ-YINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD    ++ ++ +     + S G  G     +        +    S  G   +      
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYG-SGDLSDFQISNIAVRSEYFCFSFLGL-LNVELKTV 283

Query: 308 GEFQVYNALVAAGLCIAIG-------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               V N   A                D    ++ + K +    R   V     G     
Sbjct: 284 LFHNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMD 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV---- 415
           DYAH    ++  L  I+     + I++ F         +        L  ADI I+    
Sbjct: 344 DYAHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSDADILILHNIY 403

Query: 416 ----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 404 LSNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|319957735|ref|YP_004168998.1| UDP-N-acetylmuramate--l-alanine ligase [Nitratifractor salsuginis
           DSM 16511]
 gi|319420139|gb|ADV47249.1| UDP-N-acetylmuramate--L-alanine ligase [Nitratifractor salsuginis
           DSM 16511]
          Length = 440

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 64/430 (14%), Positives = 137/430 (31%), Gaps = 60/430 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+  GA+ ++ S+A    +          I       + LS   +  +    + + AV
Sbjct: 55  PDAVE-GADRVIYSAAVRPSNVEYQRAKELGI-------ELLSRKEALKFILEDKEVYAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            G  GKS+ ++ +  +              + I + +++      S            + 
Sbjct: 107 GGAHGKSTTSAMLASLLPE---------TNALIGAISKEFGSNVRSAP----------ND 147

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V   + E+    L               TN+  +H++Y++  +  F    R F EL   
Sbjct: 148 KVVFEADESDESFL------NSNPKLAIVTNVEPEHMEYYEYDEERFYNAYRKFLELAH- 200

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  +D +   + +   +      S  Y  + ++  +   +  +      +     
Sbjct: 201 --IRVLNGEDPFLYSLKEELPS------SYLYPSRDLNNIEFVLVDGEPHTRFELRDL-G 251

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F     G     +A +A    + +G D   + E L+    +  RF+ +  N     +  
Sbjct: 252 RFEVFGFGTHIAVDAALAILAAMELGEDPETLRERLKNYRGIKKRFDIIQ-NDEHCVVID 310

Query: 361 DYAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           DY H    +   L+++RT        +  V++                   +  D  ++ 
Sbjct: 311 DYGHHPTEIAATLESLRTFAKMRGLSKFKVIWQPHKYTRTLDNLKGFVECFEGVDELVIL 370

Query: 417 DDNPRS--EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL------VVA--G 466
                   E P  ++       P    +  R + I   ++   K  VL      ++A  G
Sbjct: 371 PIWSAGEIEIPIDLKGAFSRYEPTMAHRVTREDGIVKVLD--EKGQVLREFREGLIAAFG 428

Query: 467 KGHETVHIVT 476
            G  T  I  
Sbjct: 429 AGDITYQIRG 438


>gi|20806550|ref|NP_621721.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254478921|ref|ZP_05092283.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|20514987|gb|AAM23325.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214035143|gb|EEB75855.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 450

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 63/402 (15%), Positives = 129/402 (32%), Gaps = 72/402 (17%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           EN + VTGT+GK++ +  +  +   SG                +   + T     L K+ 
Sbjct: 48  ENKVIVTGTNGKTTTSGLIAHLLSYSGRKVVH---------NREGANMRTGIATSLIKSS 98

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S   +        E     L    ++ I       TN  RD +D         N K++  
Sbjct: 99  SLTGNLDRDAAVFEVDEANLSFV-VNEINPNVVVITNFFRDQLDRFGELDLIVN-KVKKA 156

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK------------------- 275
              L K+S  ++ ADD ++  +     +   +VL  G +                     
Sbjct: 157 LSDLSKDSFVLLNADDPFTASI---GEDLEAKVLYYGIEDDIKSLKSSSFEQKFCPVCGT 213

Query: 276 ---------------------------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                                            +    +  +  +S + K F     L G
Sbjct: 214 KYEYKKIYYGHLGNYYCPNCGKKRPSLDFRASDIFLSEDGIKFKLSYKDKIFTVKSNLVG 273

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + VYN L +    + + +D + +L+ +E    + GR + +    RG +  ++       
Sbjct: 274 LYNVYNILASTSAGMLLNLDDSTILKAVENYWPIEGRLQKIQI--RGKKAIINLIKNPVG 331

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA---DIA--IVTDDNPRSE 423
            E  L  +        +++       D      +  + L+          I+T    R+E
Sbjct: 332 FESTLNMLSQFDKPLNLLILINDNYADGRDVSWLWDVNLEEFLSKAKVNHIITS-GLRAE 390

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D   +R +        I+     EA++  +++  ++   ++A
Sbjct: 391 D-MALRVKYAGFDTERIKIMPLNEAVKEILDITKEE---LIA 428


>gi|307718907|ref|YP_003874439.1| UDP-N-acetylmuramate--L-alanine ligase [Spirochaeta thermophila DSM
           6192]
 gi|306532632|gb|ADN02166.1| UDP-N-acetylmuramate--L-alanine ligase [Spirochaeta thermophila DSM
           6192]
          Length = 489

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 121/427 (28%), Gaps = 61/427 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++ S+AY          +   I      R  L  +++            + G  GK+S 
Sbjct: 74  ALIHSAAYPPTHPQLAEAARLGIPCYSYPR-ALGAYSTHF------RSAGIAGVHGKTST 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +    + +   L +  +                T S + L    + L+     +   E 
Sbjct: 127 TALAGTLLRALSLPAATL----------------TGSAVPLWGGRATLTHPAPRYFVAET 170

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +   +             T++  DH+DY+ T +  F A +  +  LLP     +  AD
Sbjct: 171 CEY---RRHFLHFSPTWIVLTSVEEDHLDYYPTYEDIFAAFLE-YARLLPPHGALVYCAD 226

Query: 250 DAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGK 298
              +  +     A      ++  G              H   Q          T+ V G 
Sbjct: 227 QPGAARLAHTLAAERPELTLIPYGRTAPGPFRITAVHQHPGGQTARLAAGLSFTLHVPGT 286

Query: 299 DFDFLFPLPGEFQVYNALVAA------GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                           A  A        L    G     + + L        R E VG  
Sbjct: 287 HMLLNAAAALALISLIAQDAGRAPSPEALLTEYG---PTLQDALASYTGTRRRSEVVG-E 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLAD 411
           + G     DY H   ++   L+  R+   GR I++ F                 + + AD
Sbjct: 343 ACGILFLDDYGHHPTAIRATLEGYRSFYPGRRIILDFMSHTYSRTAALLHEFARSFEPAD 402

Query: 412 IAIVTDDNPR---------SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           I I+                ED  +    +   +  F E  +   A      +L   D+ 
Sbjct: 403 IVILHKIYASAREKAGAVTGEDLYRAAKAVHPRVHYFHEIMD---AFEYCTRLLGPGDLF 459

Query: 463 VVAGKGH 469
           +  G G 
Sbjct: 460 ITMGAGD 466


>gi|300722057|ref|YP_003711337.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628554|emb|CBJ89126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 441

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 135/398 (33%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S   +L        ++  + ++ +   F          +    I+A+TG++GKS
Sbjct: 71  ADLIIASPGIALATPELQAAADAGVEIIGDIELF--------CREATAPIVAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +                      L  +      +
Sbjct: 123 TVTTLVGEMAKEAGWQVGVGGNIGVPA--------------------LELLKKSCQLYVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K  A +  N+  DH+  +      Y  AK+R++++        I+
Sbjct: 163 ELSSFQLE--TTYSLKAAAATVLNVTEDHMVRYPEGLPQYRAAKLRIYDQ----AKACIV 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A D    ++   A       +S G       L         QQ+ ++           L
Sbjct: 217 NAQD----QLTLPAGGEESCYISFGVDSGDYQLDS-----EHQQLVVNQCPVLATRDMQL 267

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+    N L A  L  A+GI     L+ L     +  RF+ V        I    A   
Sbjct: 268 AGQHNYTNGLAALALADAVGIPREASLQALRTYSGLDHRFQVVHMRDGIRWINDSKATNV 327

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            S +  L  ++    G + +    G  +     P+   I+ +   +     D    +   
Sbjct: 328 GSTQAALSGLK--VEGTLYL-LVGGDGKSADFTPLKPDISGNNIRLYCFGRD---GDQLA 381

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++R EI       +      +A+R     L   D++++
Sbjct: 382 QLRPEIA------VLTETMEQAMREIASKLVAGDMVLL 413


>gi|297170220|gb|ADI21258.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 385

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 118/347 (34%), Gaps = 48/347 (13%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL   L    +Q  +  I  +  DSR  + G +F+ + G   D  +++ + + +GA
Sbjct: 8   KSLRELSQILGFENVQ-TDANIERIVFDSRIARKGDLFIPLKGKNYDAEIYVEEVLKKGA 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             I        + F ++       +VVD+    L    +    K+   ++ +TG+ GK++
Sbjct: 67  SVI-----TKQKIFGSS-------IVVDDVYSSLLDICANKLIKNKGKVIFITGSYGKTT 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +   ++ +                       ++    +   +   +  +      ++ VE
Sbjct: 115 IKDMLKSLL----------------GDKCHASKDNENNEFGIPFTILSMPKN-TEYLVVE 157

Query: 189 ASSHGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
             +  +    L  + +       T +  +H+   +  +     K++L E L  K+    +
Sbjct: 158 CGARNIGDFDLISEKLYCDVFILTAIASNHLSTFKNIENISKTKLKLKECL--KDKDNFV 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------ 300
              +  +K + ++      R L++    K +          +  V I + G +       
Sbjct: 216 DGREIKNKNIFEKNKGIIQRTLTLLSIDKDLKEFIFTPTAGRGNV-IKLHGSEIIDQTYN 274

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE----HLEKLH 340
              D +     E    N ++  G    +G D     E    HL    
Sbjct: 275 AHPDTVIATAMEEDSNNTILVLGDMAELGEDENKKHENVLNHLADFQ 321


>gi|87122629|ref|ZP_01078506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MED121]
 gi|86162087|gb|EAQ63375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MED121]
          Length = 447

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 118/357 (33%), Gaps = 42/357 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   ++A+TG++ KS+V + V  +   SG +    G    +   A D    TP   
Sbjct: 103 FCEHVNAPLVAITGSNAKSTVTTMVADMLLASGKNVAVGG---NLGQPALDLLTHTPD-- 157

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                          +  +E SS  L+  R+  +        N+  DH+D + +   Y  
Sbjct: 158 ---------------YYVLELSSFQLETTRV--LNAKVACILNVSEDHMDRYDSLYDYQR 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K +++         A+    D  +  ++      G     +    +F  ++        
Sbjct: 201 VKQKVYRNCES----AVCNKQDILTAPLLPAGTPVGVFTTGLADLNEFGLIEDEGFWLCH 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVVPGRF 346
               +            L G+    N L +  +   +G++     + E+L+    +  R 
Sbjct: 257 GVKRLY-----HSSDIRLKGKHNYANFLASFAMLHLLGVELKSDAIAEYLKTFSGLAHRC 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+      G  Y++ +  +N    +       +  R I +   G  +     P++  I 
Sbjct: 312 EFIAE--HQGVTYINDSKGTNVGATLAALEGLGSKHRNIHLILGGKGKGADFSPLLSSIQ 369

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             +  +++  +D        KI    +  +       +  E +   +E     D+++
Sbjct: 370 QYVKSVSVFGED-------AKIIIGALGAVDNLSHYQDLDEVMVGCVEQAVADDIVL 419


>gi|26987285|ref|NP_742710.1| UDP-N-acetylmuramate [Pseudomonas putida KT2440]
 gi|24981930|gb|AAN66174.1|AE016245_3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas putida KT2440]
          Length = 449

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 129/404 (31%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+             A + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGVPQN-----------FSASARLGDTPFFVVEADEY 162

Query: 191 SHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +          NL  DH D      +       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +   + V+         V + G  G++   +      +  +  +  EG+      + L 
Sbjct: 222 TEQALERVIGM--GCWTPVQTTGEGGQW---QARLLSPDGSRFEVLFEGEVQGVVDWALT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  A+ ++ L     V  R E V    +G  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPAMGIDGLSAFKSVKRRMEKV-AEVQGVTIYDDFAHHPT 335

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R  +    +I V     +  + G        +++ AD  I         D 
Sbjct: 336 AIATTLDGLRKRVGEAPVIAVIEPRSNSMKLGAHRDGLPESVNDADQVIWYAPANLGWDL 395

Query: 426 EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
               A+            + +EA I            +V+   G
Sbjct: 396 AATAAQ----CKVPSVVADSLEAIIERVKGQARPGTQVVIMSNG 435


>gi|56476242|ref|YP_157831.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamin
           opimelate ligase [Aromatoleum aromaticum EbN1]
 gi|56312285|emb|CAI06930.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-
           diaminopimelate ligase [Aromatoleum aromaticum EbN1]
          Length = 451

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 110/358 (30%), Gaps = 27/358 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++  S +  + + +GL    +     +      +   T SP ++ +
Sbjct: 101 QGRWVLAVAGTHGKTTTTSMLAWMLEDAGLEPGFL--VGGVPGNFGVSARLTDSPFFVIE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y ++                       +       NL  DH D      A    +  
Sbjct: 159 ADEYDTAFCDKRSKFVHY------------RPRTAILNNLEFDHADIFSDLAAI-ETQFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P     I  AD+   K V   A      +   G   ++             ++ 
Sbjct: 206 HLVRTIPASGRIIANADEESLKRVA--ARGCWSELEWFGDGAQWSAAAGADEREAVFRLR 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             + G       P+ G     NAL A      +G+  A  +  L     +  R E  G  
Sbjct: 264 DEIVG---SVAMPMSGSHNRSNALAAIAAARHVGVTPAQAIASLAGFRGIKRRMEVRG-Q 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
            RG  +Y D+AH   ++ + +    R   +GRI+ V          G        +L  A
Sbjct: 320 VRGITVYDDFAHHPTAIALTVDGLRRREPAGRILAVLEPRSNTMKLGVMKDRLPESLAQA 379

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D      +    +    +      G     +  +R+ A           D ++V   G
Sbjct: 380 DRVYCYANGLGWDVAGALAPLGERGAT--YDDLDRLVA--DVAAAARPGDHVLVMSNG 433


>gi|315634759|ref|ZP_07890042.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Aggregatibacter segnis
           ATCC 33393]
 gi|315476517|gb|EFU67266.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Aggregatibacter segnis
           ATCC 33393]
          Length = 457

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 86/274 (31%), Gaps = 22/274 (8%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+G DH D     +A    +       +P     + +A++   ++ +     
Sbjct: 180 NPRTLIINNIGFDHADIFDDLKAIQR-QFHHMIRTIPNNGRILSFANEESVQQTLSMGCW 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           + C+ +     G           H+  +  +   G+   +  + + GE  + N L+A   
Sbjct: 239 SECQYV-----GHDQEWYAERIKHDCTEFAVFHNGEKVAEVHWNIVGEHNMRNGLMAIAA 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G+        L        R E V  N +G  +Y D+AH    ++  L  +R    
Sbjct: 294 AHHAGVSIENACAALGVFINAKRRLE-VKGNVQGVTVYDDFAHHPTEIQATLTALRDKVG 352

Query: 382 GR--IIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHG 435
               I+ V          G        AL+ AD   +         P+ I    AEI   
Sbjct: 353 QNERILAVLEPRSNTMKMGVHKEEIAPALEKADAVFLFQ-------PDTIPWKVAEIAAH 405

Query: 436 IPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           +       + ++     I       D ++V   G
Sbjct: 406 LTQPAYDSDNLDDFVHLIAAEAKPTDHILVMSNG 439


>gi|213647637|ref|ZP_03377690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 90

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
            GA A++VS    +         + P ++V +TR+     
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQL 90


>gi|319899159|ref|YP_004159252.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           clarridgeiae 73]
 gi|319403123|emb|CBI76681.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           clarridgeiae 73]
          Length = 471

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 133/385 (34%), Gaps = 52/385 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  + ++ G      G   T                     L+  
Sbjct: 124 VAITGTNGKSTTTALLSHLLEKMGYDVQTGGNIGT-------------------AILTLK 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +E SS  ++      ++   G   NL  DHID H + + Y   K R+    
Sbjct: 165 PFVKKRIYVIECSSFQIELA--PSLQPTIGLLLNLTPDHIDRHGSFELYGQIKGRVVS-- 220

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K S A+I  D    + + ++  + G ++  V    K   +K    +   +  ++    
Sbjct: 221 --KASNALISVDSLVCRALYQKLFDEGYQIKPVS---KERFIKNGFYVEGTKLFSVRYGH 275

Query: 298 K----DFDFLFPLPGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVG 350
           +    D   +  L G     NAL+A      + I   + + + EHL     +  R + V 
Sbjct: 276 RHLLADLANMTSLRGSHNAENALMALATLQMLKITTSEISDIEEHLASYLGLAHRMQEVC 335

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G  ++++ +  +N+ E     + T  +   IV    G  ++ G   + G       
Sbjct: 336 --KIGSILFINDSKATNA-EASAPALATFNNIFWIV---GGQAKEGGIDSLKGFFYKIRK 389

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---DVLVVAGK 467
              I T     +E+  +I             +     A+R A     +    D +++   
Sbjct: 390 AYLIGT----AAENFARIIGSAFPFSMSLTLEN----AVREAASDAARDTTQDAVILFSP 441

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
              +     N + +      ++ ++
Sbjct: 442 ACASYDQFKNYKVRGEAFVSLVMQL 466


>gi|169334623|ref|ZP_02861816.1| hypothetical protein ANASTE_01026 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259340|gb|EDS73306.1| hypothetical protein ANASTE_01026 [Anaerofustis stercorihominis DSM
           17244]
          Length = 458

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 121/341 (35%), Gaps = 49/341 (14%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V +I + +G  ++  G      SF  D      +                   ++E SS
Sbjct: 130 LVGEIFKNAGYDTYVNGNIGN--SFINDAEKGDDNS----------------VYALEVSS 171

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           + L+ +  D  K      TN+  DH++ H T + Y   K  +F     +    I+  +D 
Sbjct: 172 YQLELN--DKFKPDIAIMTNITPDHLERHSTFEEYVRVKGNVFVNQ-DENDYLIVNKED- 227

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLP 307
             K +   + NA  +VL+   +      K   A    + + I  +G+ +  +      L 
Sbjct: 228 --KILTGLSENAKSKVLTFTVKED----KNANAYLKDENIIIDFKGEVYPLIDINELKLY 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N + A+   +  G++   ++  L+    V  R E+V T   G     D   T+ 
Sbjct: 282 GLHNVMNVMAASLAAVVKGVEKETLINTLKNFKSVEHRIEYVDT-VDGIEYINDSKGTN- 339

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++  +  ++ +      V+   G D+      ++  I  ++  I +      + +D   
Sbjct: 340 -VDATVTAMKAMKKKT--VLMLGGYDKMTPFDELVKSINDNIKCIVLYGAVQNKIKDTLD 396

Query: 428 IRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   ++ G    +           A  + +K + +++
Sbjct: 397 KYDYKNYHMVQGGFDEVCI--------KATSLADKGECVLL 429


>gi|223889325|ref|ZP_03623912.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
 gi|223885246|gb|EEF56349.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
          Length = 468

 Score = 93.6 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 138/418 (33%), Gaps = 52/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           IV SSAY+       + +   N PIL      + L   + + Y       + + G+ GK+
Sbjct: 76  IVYSSAYNKDGLQVLLEAKELNIPILSYP---EALGELSRKYY------SIGIAGSHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +F+  +  + GL+   I   S++  F  ++ +   S I++ +   Y         ++
Sbjct: 127 TTTAFLGVLFNKLGLNPNVI-VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNM 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A ++ +   L K    II 
Sbjct: 186 L-------------------ILTNVDYEHVDFFKNYEALEEAFLQ-YINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD    ++ ++ +     + S G  G     +        +    S  G   +      
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYG-SGDLSDFQISNIAVRSEYFCFSFLGL-LNVELKTV 283

Query: 308 GEFQVYNALVAAGLCIAIG-------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               V N   A                D    ++ + K +    R   V     G     
Sbjct: 284 LFHNVLNFSAALLALNLFLESNGRSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMD 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV---- 415
           DYAH    ++  L  I+     + I++ F         +        L  ADI I+    
Sbjct: 344 DYAHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSAADILILHNIY 403

Query: 416 ----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 404 LSNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|170781766|ref|YP_001710098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156334|emb|CAQ01482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 514

 Score = 93.6 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 108/304 (35%), Gaps = 32/304 (10%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + VE SSH L  H +  ++  + +F NL  DH+++H ++QAY  AK R++ + 
Sbjct: 182 HPDGFDVLVVELSSHQL--HYMREVRPYSSAFLNLADDHLEWHGSRQAYAAAKGRVYAD- 238

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--------FIHLKKVCAIHNKQ 289
             + +     AD A    +       G R +  G               L     +  + 
Sbjct: 239 -TRVACVYNRADRATEDALRHANVQDGARAIGFGLDAPGPSDLGIVDDILCDRAFLEERF 297

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              + +   D      L     V N L AA L  + G+  A+V + L++  +   R E +
Sbjct: 298 TSALELTTLDELRAVGLAAPHIVQNVLAAAALARSYGVSPAVVRQALQRFELDSHRIERI 357

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G       +    A   ++    L    ++    + +V   G  +      ++   A  L
Sbjct: 358 GERDGVAFVDDSKATNPHAASASLAAFPSV----VWLV--GGLLKGVELDDLIRAHAARL 411

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGN----RIEAIRTAIEMLNKQDV 461
               ++        +  ++ A      P        + +       A+R A  +  + D 
Sbjct: 412 RAAIVI------GVERAELLAAFARHAPDVTVLEVAESDTDEVMRSAVRLAAGVAREGDT 465

Query: 462 LVVA 465
           +++A
Sbjct: 466 VLLA 469


>gi|188996362|ref|YP_001930613.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931429|gb|ACD66059.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 465

 Score = 93.6 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 114/299 (38%), Gaps = 30/299 (10%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K       N+  DH+D+H+ ++ Y  +K++L    L     +++  +D   K +  +  
Sbjct: 185 LKPKVSIILNISTDHLDWHKKEKHYILSKLKL----LKNTEFSVLNYNDKCLKNIKGK-- 238

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--------EGKDFDFLFPLPGEFQVY 313
                V     +     +K +     +++  ++V        + ++      L G   + 
Sbjct: 239 ----NVYYFSLKELPEDVKGIYLKEYRKEDGLNVYNLVLKDDKTEEIQVKTQLIGFHNLQ 294

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N +        + ++   V+E +++   +  R EFV     G + Y D    S +++ + 
Sbjct: 295 NIMATILTAYLLNVNINKVIEKIKEFKPLNHRIEFVK-EVEGVKFYNDSK--STTVQAVE 351

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K I +      IV+   G ++      +   +   +    I+        D E+I   +I
Sbjct: 352 KAIESFDEK--IVLILGGINKGGDFSKLGSLLKTKVLSAFII------GRDKEQIFR-MI 402

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 I+K +  EA++ A E+      +V+   G  +  +  N   + +   +I+  +
Sbjct: 403 KDYTNSIKKESLEEAVKDAFEVAKSNKAVVLFSPGCASFDMFKNYADRGNKFKEIVESL 461


>gi|326568323|gb|EGE18403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC7]
          Length = 469

 Score = 93.6 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 131/373 (35%), Gaps = 36/373 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGK 126
           A+ I++S     +  S        I VV + + F+    A  L       ++A+TG++ K
Sbjct: 62  ADQIIISPGIDPRTPSIAAAKAQGIPVVSDVQLFIDTLKARDLAQATNTPVIAITGSNAK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V + V ++ +R+G+     G   T                    AL  L+ Q +  V 
Sbjct: 122 STVTTLVGEMAKRAGMIVGVGGNIGT-------------------PALELLTIQNMDLVV 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE        AII
Sbjct: 163 LELSSFQLEH--ISNLAAQGATILNLSADHLDRHDGMADYLAQKLRIFEHC----QTAII 216

Query: 247 YADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DF 302
             DDA  +K+ +            +       H      + +          KD      
Sbjct: 217 CQDDAGLAKQCLTTLQRIAPNHTIITTDSSLTHQTADFYLFDDGDGMALYHQKDKLLPIH 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+  + NAL A  L  A  +    +L+ L+    +P R E++             
Sbjct: 277 QLKIKGKHNLLNALSALALGTAANLPMDAMLDTLKTFKGLPHRCEYIDDIDGKAYFNDSK 336

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
                S    +  + T+     + +   G  + Q    +   +   +  + ++  D P  
Sbjct: 337 GTNIGSTMAAIDGLGTVYGTSSLALILGGLGKGQDFSELSAYVMQWVDSVYLIGQDAP-- 394

Query: 423 EDPEKIRAEIIHG 435
                I  +++ G
Sbjct: 395 ----MIEQDLLKG 403


>gi|242278169|ref|YP_002990298.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           salexigens DSM 2638]
 gi|242121063|gb|ACS78759.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           salexigens DSM 2638]
          Length = 434

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 132/399 (33%), Gaps = 69/399 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ IV S     ++ +  I  N P   + +  +  S FA        E  +A+TGT+G
Sbjct: 77  AGADVIVASPGIPARNIAPFI-GNLPERAIISELELASWFA-------NEPKIAITGTNG 128

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + ++ I + SG ++F      T  S                             +
Sbjct: 129 KTTTTALIKHILEESGRTAFAGANYGTPLSEFIYEDGK------------------ADVL 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L   RL   +  A    N+  +H++YH+    Y  AK+++FE    ++  AI
Sbjct: 171 VLEVSSFQLQNCRL--FRPQAAILLNISPNHLNYHEDMDEYLQAKLKIFERQ-SEDELAI 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD     +                                        +G  F+    
Sbjct: 228 LPADMKGELDPASFTKAEVKW----------------------------FDGSTFEEQPN 259

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG+    N   A      IG+        ++     P R + +G+      I       
Sbjct: 260 LPGKHNCLNIEAAWLALEKIGLTREEFEAGMKTFVGKPHRIQDIGSVDGIRFINDSKGTN 319

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++   L +      G + ++   G  +    R I+  +   +A++ +        E  
Sbjct: 320 LDAVRAALNSF----DGPVRLLL-GGVFKGGDVREIIPAMRGKVAEVGLFGAGREHFEP- 373

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++ E            N  +A+R         D +++
Sbjct: 374 -ALKDEF-----KISWHENLEKAVRALFANSKAGDTILL 406


>gi|238026180|ref|YP_002910411.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia glumae BGR1]
 gi|237875374|gb|ACR27707.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia glumae BGR1]
          Length = 470

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 100/300 (33%), Gaps = 25/300 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + SGL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEESGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTESSFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +A    V+  A      V   G +G +  L     +   ++  + 
Sbjct: 208 VRTVPGVGRIVANGREAALDRVL--ARGCWSEVERFGVEGGWQALPAEDGVPVDERFAVY 265

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G    +  + + GE    NAL A     ++G+  A           V  R E  G + 
Sbjct: 266 WQGARMGEVAWSVQGEHNRQNALAAIAAARSVGVPPAQAARAFATFRNVKRRMEIRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +RT        I+              +  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRTRIGREHTRILAVLEPRSNTMKLGTMKAQLPASLAD 384


>gi|326800443|ref|YP_004318262.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
 gi|326551207|gb|ADZ79592.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
          Length = 453

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 122/352 (34%), Gaps = 35/352 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++   +        +++ P LV       +  S  A        +  + V G+ GK+++ 
Sbjct: 59  ITEDINAVVLGMHAKADNPELVRAQELGLQIYSYPAYIYEQAKDKTRVVVGGSHGKTTIT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + +  G S   +   + +  F    ++T  +P+ + +   YL+S           
Sbjct: 119 SMIMHVLKELGRSFDYV-VGAKLEGFETMVKITKDAPLIIIEGDEYLASA---------- 167

Query: 191 SHGLDQHRLDGIKLI--AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +         + +  DHI+   T Q Y   + +LF E + ++   +   
Sbjct: 168 ----IDRRPKFLLYHANIALISGIAWDHINVFPTYQEYVE-QFKLFIESIEEKGTLVYNK 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   KEV     N    +   GY+     + K  +          ++    +    + G
Sbjct: 223 DD---KEVQNLVSNNNSNINKHGYKLPEFTINKGVSY---------LKTSKGEIALQIFG 270

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N   A  +C  +GI      + +        R E+V   + G  +Y D+AH+ + 
Sbjct: 271 KHNLSNLAGAFTVCEWLGISREDFYQAIGSFKGAARRLEYVADYA-GSVVYKDFAHSPSK 329

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDD 418
           +   +  ++       +V               + +    +  AD A+V  D
Sbjct: 330 VRASIDAVKEQYPNSKLVAIIELHTFSSLNEEFLQEYFDTMKQADEAVVFID 381


>gi|295091436|emb|CBK77543.1| folylpolyglutamate synthase/dihydrofolate synthase [Clostridium cf.
           saccharolyticum K10]
          Length = 456

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 140/412 (33%), Gaps = 63/412 (15%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS- 154
           D+ R  +      L       ++ V GT+GK SV +F+  I + +G  +        +S 
Sbjct: 47  DDIRAMMKAMGLSLDK---IRLIHVAGTNGKGSVCAFLSSILREAGEHTAVFTSPHLVSV 103

Query: 155 -------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH----GLDQHRLDGI- 202
                        +    +   + + L  L S G+TH +           + Q R     
Sbjct: 104 RERFCFDGEQAGEKEFLQAFYRVREGLCRLQSLGLTHPTYFEFLFLMFAAMMQSRKGFTA 163

Query: 203 -----------------KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
                            +      T++  DH++Y   T +     K  + +  +P     
Sbjct: 164 VVETGLGGRLDATNAVDRPTLCVITSISLDHMEYLGNTVELIAGEKAGIIKPGVP---VV 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               D A +  +  RA        +VG            ++     + I   G++     
Sbjct: 221 YDSTDPAAAAVIRDRARELKSPARAVGTDS------FSESVLKDGHLFIRKNGEE-PLEI 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P   ++Q  NA++A      +GI    V E L+K        E +        +Y+D AH
Sbjct: 274 PFAAQYQAVNAMLAVQAAEILGIPERAVREGLQKTVWPGRMEEIMPG------VYLDGAH 327

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDD-NPR 421
               +    +   +++  R I++F    D++      M +I L     D+ I+T     R
Sbjct: 328 NEGGIRAFARAAASLSGKRKILLFAVSSDKEY---REMAEILLREFAPDVLILTQIAYGR 384

Query: 422 SED----PEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             D     E  R  +       P    + +  EA+ TA++   ++D +  AG
Sbjct: 385 GLDIHRLEEASREAMAKAGGHGPRLFVRPSAEEALLTALDEKGEEDTVFCAG 436


>gi|198282527|ref|YP_002218848.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666253|ref|YP_002424717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247048|gb|ACH82641.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518466|gb|ACK79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 448

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 131/351 (37%), Gaps = 41/351 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GKS+V + V ++ + +GL +   G   T +          P    L  + 
Sbjct: 106 APIVAITGSNGKSTVTTLVGEMARAAGLRAAVGGNLGTPALDLLPETGPEPDLYVLELSS 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L++    H                     A +  NL  DH+D+H    AY  AK R+F
Sbjct: 166 FQLAACHDFH-------------------PRAAAILNLSPDHLDWHGDYAAYAAAKTRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +   ++   + A D ++  +  +   AG RV   G  G   H   +       ++ + 
Sbjct: 207 RAMGAGDTLV-LNAGDTFTAALPPQVP-AGVRVQFFG--GADEHDASIA----GDRLCLR 258

Query: 295 VEGKDFDFLFPLPG-EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +G   D             NAL AA L  A+ +    + + L     +P R   +   +
Sbjct: 259 SDGPLLDLDQLPLRGAHNAENALAAALLARAMAVPVTAIRQALRTFPGLPHRLARIAEIN 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             G  Y D +  +N L   LK +  +     +V+   G  +     P+  +       + 
Sbjct: 319 --GVSYYDDSKGTN-LGATLKAMSGLPGP--LVMILGGDAKGADLSPLR-EACRGQRGVV 372

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++  D P+        + ++ GI       N  +A+  A  +  + D +++
Sbjct: 373 VLGKDGPQ-------ISALLAGILPVESARNMAQAVEKAAVLAQRGDQVLL 416


>gi|254299315|ref|ZP_04966765.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 406e]
 gi|157809086|gb|EDO86256.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 406e]
          Length = 504

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 113/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  + + +GL+   +     I     +  ++           + 
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLNPGFL-----IGGVPLNFGVS-----------AR 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 183 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 241

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    D   + V+ R       V   G  G +        +    +  + 
Sbjct: 242 VRTVPGVGRLVTNGRDDALERVLSR--GCWSDVERFGVDGGWQASPVENGVPVDGRFAVY 299

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 300 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 358

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +RT        I+              +  ++   LAD
Sbjct: 359 DGVTVYDDFAHHPTAIETTIAGLRTRIGRENTRILAVLEPRSNTMKLGVMKAQLPASLAD 418

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     P   D       + +  + G     + + A+  A+       D ++V   G
Sbjct: 419 ADLVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLVMSNG 478


>gi|328676597|gb|AEB27467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Francisella cf. novicida
           Fx1]
          Length = 456

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 20/284 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++A+ GT GK++  +   +I +++GL+   +     +SS    +   T S  ++ +A 
Sbjct: 105 KKVIAIAGTHGKTTTTTITIKILEQAGLNPSFL--VGGVSSDFGVSSRYTDSEYFVIEAD 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++       +                       N+  DH D  +   A F    +L 
Sbjct: 163 EYDTAFFDKRSKLIHY------------DPSIFVINNIEFDHADIFKDIDAIFWQFHQLL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +P  +  I  A D   ++++       C    V              +   +     
Sbjct: 211 RK-MPSTAKIIYNAKDDNVQKIISMG----CWSELVKVNSDLGISITKHTLDYSKFELCD 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G   +  + L GE    NA+ A  +   + I   +V + LE    V  R E V ++  
Sbjct: 266 INGNSVEVSWGLIGEHNALNAMSAYAVAKQLNISDEVVKDALESFRGVKRRLE-VLSHQD 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +Y D+AH   S+++ L+ +R       +V           +
Sbjct: 325 NITLYDDFAHHPTSIKLTLEAVRNKAKDAYVVALIDPRSNTMRQ 368


>gi|15673572|ref|NP_267746.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. lactis Il1403]
 gi|281492169|ref|YP_003354149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis KF147]
 gi|30316118|sp|Q9CF91|MURD_LACLA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12724595|gb|AAK05688.1|AE006389_8 UDP-N-acetylmuramoylalanine D-glutamate ligase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281375840|gb|ADA65334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis KF147]
 gi|326407055|gb|ADZ64126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 450

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 22/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +D  +      TNL   H+DYH +Q+AY  AK R+ +E +  +   I+
Sbjct: 166 MELSSFQLM--GIDSFRPKIALITNLFSAHLDYHGSQKAYEAAKWRI-QENMTSDDFLIL 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +    + +   A      VL+   + K        A     ++  + E         L
Sbjct: 223 NFNQEKCRNL---ADKTKATVLAFSTKEKVNG-----AYSKDGKIYFNDEYIMEVSELSL 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  + NAL A       G  +  ++E L     V  R +++G    G ++Y D   T+
Sbjct: 275 PGEHNLENALAAIVASKLQGTKNEAIVEVLTSFAGVKHRLQYLG-EIDGRKVYNDSKATN 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +    K +    + ++ +    G DR  G   +   +  DL  + +       + +  
Sbjct: 334 --ILATQKALSGFDNSKLWL-LAGGLDRGNGFEELEKDL-QDLKGMVVFGQ----TANKL 385

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ AE ++ IP F +  N  +A+   +      D +++
Sbjct: 386 RLTAEKLN-IPVF-DSENVAKALEEILPQTQAGDTILL 421


>gi|167564145|ref|ZP_02357061.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia oklahomensis EO147]
          Length = 458

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 114/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  I + +GL+   +     I     +  ++           + 
Sbjct: 93  VLAVAGTHGKTTTSSMLAWILEDAGLNPGFL-----IGGVPLNFGVS-----------AR 136

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 137 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 195

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +   + V+ R       V   G  G +  L     +   ++  + 
Sbjct: 196 VRTVPGVGRLVTNGREDALERVLSR--GCWSDVERFGVDGGWQALPAEDGVPVDERFAVY 253

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 254 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 312

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            G  +Y D+AH   ++E  +  +R    G    I+              +  ++   LAD
Sbjct: 313 DGVTVYDDFAHHPTAIETTIAGLRARIGGENSRILAVLEPRSNTMKLGTMKAQLPASLAD 372

Query: 412 I-AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     P   D       + +  +       + + A+  A+       D ++V   G
Sbjct: 373 ADLVFGYGAPTGRDALGWSLPDALAPLGDKAHAFDDLHALVKAVTAAARPGDHVLVMSNG 432


>gi|134095921|ref|YP_001100996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Herminiimonas arsenicoxydans]
 gi|133739824|emb|CAL62875.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Herminiimonas
           arsenicoxydans]
          Length = 459

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 112/366 (30%), Gaps = 32/366 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
             + +LAV GT GK++ +S +  I + +G     +  G        A+ +     S  ++
Sbjct: 101 QGKWVLAVAGTHGKTTTSSMLAWILEDAGYDPGFLIGGVPMNFGISARLSGTGRESSFFV 160

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            +A  Y ++                       +       NL  DH D      A    +
Sbjct: 161 IEADEYDTAFFDKRSKFVHY------------RAKTAILNNLEYDHADIFPDLAAI-ETQ 207

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                  +P     I  A +   + V+KR           G + +          H+   
Sbjct: 208 FHHLVRTVPGVGRMIANAREESLQRVIKR--GCWSETEWFGSKEQDGW---TMTTHDDDT 262

Query: 291 VTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   G K     +PL GE    NAL A      +G+  A  +  L +   V  R E  
Sbjct: 263 FDVFFNGEKQGTVQWPLNGEHNRMNALAAIAAARHVGVLPAQAIASLGQFENVKRRMELR 322

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G       +Y D+AH   ++   +  +R       I+              +   +   L
Sbjct: 323 GV-VNDIAVYDDFAHHPTAIATTVAGLRKKVGTARILAVLEPRSNTMKLGTMKAALPGSL 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVL 462
            D  +V          + +  ++   +      G+R  A       +    +     D +
Sbjct: 382 LDADLVFGYGASGNGKDALGWDLAEALAPL---GDRGSAFSDLNALVAAIAKNAQPGDQI 438

Query: 463 VVAGKG 468
           +V   G
Sbjct: 439 LVMSNG 444


>gi|264680224|ref|YP_003280134.1| UDP-N-acetylmuramate [Comamonas testosteroni CNB-2]
 gi|262210740|gb|ACY34838.1| UDP-N-acetylmuramate [Comamonas testosteroni CNB-2]
          Length = 472

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 120/385 (31%), Gaps = 46/385 (11%)

Query: 103 SLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--------GPTSTI 153
              A   L G+H   +LAV GT GK++  S +  + + +GL    +        G ++ +
Sbjct: 101 QWLAEHVLRGRH---VLAVAGTHGKTTTTSMLTWVLECAGLQPGFLVGGVPLDFGVSARL 157

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTN 211
            +  +      P           +  + V  +  +         R   +  +       N
Sbjct: 158 GAAQRPAAGPGP-----------VGDEPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNN 206

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L  DH D      A       L    +P     +    +     V+  A      V S G
Sbjct: 207 LEFDHADIFDDLAAIERQFHHLI-RTVPSTGRVVSNGLEESLTRVL--AQGCWSEVRSFG 263

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                  +    A  +     +   G+      + L G     NAL A      +G+ + 
Sbjct: 264 -----SAVSDFSADGDPSDFAVLHRGRKVAQLRWSLTGVHNQLNALAAIAAADHLGVSAE 318

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVF 388
           +  E L +   V  R E  GT   G  +Y D+AH   ++   L  +R       RI+ VF
Sbjct: 319 VACEALSRFQNVKRRMELRGT-VNGIEVYDDFAHHPTAIRTTLDGLRRKLGAEARILAVF 377

Query: 389 GCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
                    G        +L+ AD+      +    D +     +     G  ++     
Sbjct: 378 EPRSNTMKLGTMKSQLPWSLESADLVFC---HTAGLDWDA-AEALESMGVGPGQRAQVAG 433

Query: 448 AIRTAIEM----LNKQDVLVVAGKG 468
            I T I      +   D +V    G
Sbjct: 434 DIETLIAQISAVVRPGDHIVCMSNG 458


>gi|261337518|ref|ZP_05965402.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277918|gb|EFA23772.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
          Length = 474

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 102/308 (33%), Gaps = 38/308 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+ VS  +  +           + V+        L         P   + +TGT+GK+S 
Sbjct: 56  ALCVSPVFPPRTPFILAAQEAQVPVLSEVELAWQLRVPNTRTGKPAPWIGITGTNGKTST 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              V  +    G ++  +G      S                             + VE 
Sbjct: 116 TEMVSTMLTACGYTAPAVGNIGNALSL-------------------AAVDPNNDVLCVEL 156

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L  H  D + L   + TN+G DH+D+H   + Y   K +++      +   +  A 
Sbjct: 157 SSFQL--HFTDSMALDCAAITNIGADHLDWHGGIERYAADKSKVYAH---AQQAIVYNAQ 211

Query: 250 DAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF------ 302
           DA  +++   A  +  R+  ++      +       I ++  +  S              
Sbjct: 212 DARVRDLAFAADASCARIGFTLDVPQDGMIGVADGWIVDRAGLMGSDPATPVMVAPVADF 271

Query: 303 -LFPLP----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRG 355
                P        + +A+ A    ++ G D+A  LE L+       R E V   T+  G
Sbjct: 272 THLREPDGTVYPHLLADAMTALAWVLSFGADAAPALEALKTFKPGGHRIECVAQYTSDEG 331

Query: 356 GRIYVDYA 363
              ++D +
Sbjct: 332 AIRFIDDS 339


>gi|305665157|ref|YP_003861444.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Maribacter sp. HTCC2170]
 gi|88709909|gb|EAR02141.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Maribacter sp. HTCC2170]
          Length = 453

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 105/309 (33%), Gaps = 29/309 (9%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 +  + + G+ GK+++ S +  +      +   I     + +             
Sbjct: 97  YEQSKDKTRVVIGGSHGKTTITSMILHVL-----NYHDIAVDYMVGA--------QLEGF 143

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                L+  +   V       SS    + +    K      + +  DHI+   T + Y+ 
Sbjct: 144 DRMVHLTKENDFIVLEGDEYLSSPIDRRPKFHLYKPNIALLSGIAWDHINVFPTFE-YYV 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            + R+F + + K        +DA   +V++ + N   ++          +      + + 
Sbjct: 203 EQFRIFVDSIVKGGSITYNEEDAEVVKVVEASENTIRKL---------PYATPEYTVEDG 253

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q +  + EG        + G+  + N   A  +C  +G+D     E +        R E 
Sbjct: 254 QTLLETPEG---PMPIEVFGKHNLNNLAGAKWVCQNMGVDEDDFYEAISTFTGASKRLEK 310

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIA 406
           +   S+   +Y D+AH+ + +    K ++       +I               +   + A
Sbjct: 311 I-AESKNTVVYKDFAHSPSKVAATTKAVKEQYPDRNVIACLELHTYSSFNPDFLKEYRGA 369

Query: 407 LDLADIAIV 415
           LD AD AI+
Sbjct: 370 LDAADEAII 378


>gi|329117290|ref|ZP_08246007.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parauberis
           NCFD 2020]
 gi|326907695|gb|EGE54609.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parauberis
           NCFD 2020]
          Length = 443

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 106/344 (30%), Gaps = 49/344 (14%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              + ++ +  I+ N P        +FL  F  +           V G  GK+S    + 
Sbjct: 72  REDNNEEIAYAIQENIPF---KRYHEFLGDFMKQF------TSFGVAGAHGKTSTTGLLS 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + +    +S+ IG  +   S      +                         E   H +
Sbjct: 123 HVLKNITDTSYLIGDGTGRGSANAQYFVFESD---------------------EYERHFM 161

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             H            TN+  DH DY    +  F A     +++   +    +Y +D   K
Sbjct: 162 PYH------PEYSIITNIDFDHPDYFTGIEDVFAAFNDYAKQV---KKALFVYGEDPELK 212

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQV 312
           ++   A      +   G+  +       +    N     +  +G++  DF  P  G+  +
Sbjct: 213 KISANAP-----IYYYGFSDEDNFTAYDIRRTTNGSDFKVKHDGQEIGDFHVPAYGKHNI 267

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA          G D  LV +H+   + V  RF     N        D+AH    +   
Sbjct: 268 LNATAVIANLFIAGFDMDLVAKHMVSFNGVKRRFTEKIINDTIII--DDFAHHPTEIVAT 325

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   R    S  I+ +F                +AL+ AD   +
Sbjct: 326 IDAARQKYPSKEIVAIFQPHTFTRTIALLDEFALALNEADSVYL 369


>gi|284172781|ref|YP_003406163.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
 gi|284017541|gb|ADB63490.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
          Length = 810

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 146/402 (36%), Gaps = 51/402 (12%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF------------ 145
           T    +L           + + + G++GK S A  ++++ + +GL               
Sbjct: 22  TETTAALLTHLDRPHEDLDCVQIAGSNGKGSTACMLERVLRDAGLDVGLYTSPDLNDLRE 81

Query: 146 --QIGPTSTISSFAQDNRLTTPSPIYLAK---------------ALSYLSSQGVTHVSVE 188
             QI          Q+        +   +               AL + +++ V    +E
Sbjct: 82  RIQINGRKIPKQRVQEFVAEIDDCVERLREVDDTPTYFEVLTALALHHFANEDVDVAVLE 141

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIY 247
               G        +  +A + T++  +H D    T +     K     ++ P ++P +  
Sbjct: 142 VGI-GGRYDATSAVDPVASAVTSVSLEHTDILGDTIEEIARDKA----QVSPADAPLVTG 196

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPL 306
           A  A  + +          V++VG     +  ++   A   + +++I+     F+   PL
Sbjct: 197 ASGAALEAIRSE-----TDVITVGSDDADVVAREHGLASPIESEISIAGPKWSFETRLPL 251

Query: 307 PGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G  Q  NA VAA L   + G+D   +   L      PGRFE + T        +D AH 
Sbjct: 252 VGPHQATNAGVAATLADQVAGVDPESIARGLRD-SYWPGRFEVMSTT---PLAILDGAHN 307

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSED 424
             + E +   +   +   + +VFG   ++D          AL   D   + + D PR+E+
Sbjct: 308 PGACETLASLVDRYSFDDLHLVFGAMREKDHRGM----AAALPSPDALYLCEPDVPRAEN 363

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + + A            G+ +EA   A+   ++ D ++V G
Sbjct: 364 TDALAAAFDDRPATIDCAGSVLEATERALSAADEGDCVLVTG 405


>gi|312148369|gb|ADQ31028.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi JD1]
          Length = 468

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 139/418 (33%), Gaps = 52/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           IV SSAY+       + +   N PIL      + L   + + Y       + + G+ GK+
Sbjct: 76  IVYSSAYNKDGLQVLLEAKELNIPILSYP---EALGELSRKYY------SIGIAGSHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +F+  +  + GL+   I   S++  F  ++ +   S I++ +   Y +       ++
Sbjct: 127 TTTAFLGVLFNKLGLNPNVI-VGSSVKDFKDNSAMAGISNIFIVETCEYKNHFLNFSPNM 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A ++ +   L K    II 
Sbjct: 186 L-------------------ILTNVDYEHVDFFKNYEALEEAFLK-YINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD    ++ ++ +     + S G  G     +        +    S  G   +      
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYG-SGDLSDFQISNIAVRSEYFCFSFLGL-LNVELKTV 283

Query: 308 GEFQVYNALVAAGLCIAIG-------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               V N   A                D    ++ + K +    R   V     G     
Sbjct: 284 LFHNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMD 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV---- 415
           DYAH    ++  L  I+     + I++ F         +        L  ADI I+    
Sbjct: 344 DYAHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSAADILILHNIY 403

Query: 416 ----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                + NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 404 LSNRENFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|226952812|ref|ZP_03823276.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|226836433|gb|EEH68816.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. ATCC 27244]
          Length = 453

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 112/360 (31%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        +  +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFCVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    +    EV+++       V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETNIDEVLEQ--GCWTPVVRTSLEPNDQAALSAELISADGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   GK   +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGKVIGEVKWSMTGQHSVANALATIAAAQHVGVSIEQACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T  RG  +Y D+AH   ++E  L    + +   ++  +          G        +  
Sbjct: 324 T-VRGIEVYDDFAHHPTAIETTLDGARKRLGERKLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 383 LADEVI--WYQPEGLD-WDLQPVIAASSNKAEVSRSLDEIIARVVNEAGEGDAVVIMSNG 439


>gi|289577961|ref|YP_003476588.1| FolC bifunctional protein [Thermoanaerobacter italicus Ab9]
 gi|289527674|gb|ADD02026.1| FolC bifunctional protein [Thermoanaerobacter italicus Ab9]
          Length = 427

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 140/409 (34%), Gaps = 61/409 (14%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152
           +N R+ LS        +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRRLLSYMG---NPQKSLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 153 -----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-- 205
                I+              Y+   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISKMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 206 --------------------AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
                                   T +  DH D    T       K  + ++    +   
Sbjct: 140 VLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQ----KGVV 195

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + +     + +V+  A       L+V  +        V          I    K  D   
Sbjct: 196 VSFYQQPEAMKVIIEACEVRNAYLTVLEKS------NVIIKEQNPDFQIFDYKKYKDLKI 249

Query: 305 PLPGEFQVYNALVAAGLCIAI-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            L GE Q+YNA +A      +      I    + E L +     GR E +    +   + 
Sbjct: 250 TLLGEHQIYNAALAIESVEKLRMYGYEITEKDIKEGLYRAKWP-GRLEVM---RKKPYLV 305

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +D AH    + ++ ++++     ++I+V G   D+D  K      I +  ADI I T   
Sbjct: 306 IDGAHNPQGMTVLKESLKLFKYDKLILVIGMLKDKDTQKML---NIIVPEADIIITTT-- 360

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           P SE   K  +E+   I     I   N  +A++ A+++  ++D+++  G
Sbjct: 361 PLSERAYK-ASELAERIEKEKVIAIENIEKAVKYALDIAKEEDMVLFCG 408


>gi|78484911|ref|YP_390836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
 gi|118595701|sp|Q31I61|MURD_THICR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78363197|gb|ABB41162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
          Length = 449

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 131/362 (36%), Gaps = 43/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R  GK    I+A+TG++GKS+V + V +  + +G   + +G    I   A D    
Sbjct: 92  ELFARAAGKP---IVAITGSNGKSTVTTLVAEALKEAG---YAVGVGGNIGCPALDLLTH 145

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                  +E SS  L+      ++ IA +  N+  DH+D +   
Sbjct: 146 PTE---------------FDVYVLELSSFQLE--TTYSLQTIAATVLNISEDHMDRYLAL 188

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AKM +    L     A++  D  + +  + R  +     L+     + +  K+  
Sbjct: 189 EDYIQAKMTI----LNNTELAVLPLD--FERVGIARPGDEVRFGLNY---AEALPPKEYG 239

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            +    Q  +  E      +  +  +      NAL    LC    +  A+  + L+    
Sbjct: 240 IVMKNGQAWLGWEDHASVPVTAMAQQGLHHQLNALAMMALCRPFDLSDAVFEKVLKTFKG 299

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +P R + V        I         +    +++I+    G++I++   GG   +     
Sbjct: 300 LPHRTQVVLEQEGVRWINDSKGTNVGATVTAIESIKETLDGQVILI--AGGVGKEADFNE 357

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +G+  +     AI+       +D   I  ++       ++  +  EA+  A  +    D 
Sbjct: 358 LGQAVVQSCRQAIL-----FGQDKAIIAQQLPQEKIQLVDTLS--EAVLLAKTIAKSGDA 410

Query: 462 LV 463
           ++
Sbjct: 411 VL 412


>gi|213857929|ref|ZP_03384900.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 242

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 16/217 (7%)

Query: 201 GIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            ++ +    TN+  DH+D YH   +         F   LP    A++  DD   +E++ R
Sbjct: 27  HLQPMVAIVTNIEADHMDTYHGDFENLKQT-FINFLHNLPFYGRAVMCVDDPVIRELLPR 85

Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317
                 +  + G+ +   + ++    I  +   T+  +G  D       PG     NA  
Sbjct: 86  VGR---QTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAA 142

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------TNSRGGR--IYVDYAHTSNSL 369
           A  +    GID   +L  LE       RF+F+G       N + G   +  DY H    +
Sbjct: 143 AVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEV 202

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +  +K  R     + +V+      R    R +    A
Sbjct: 203 DATIKAARAGWPDKNLVMLFQP-HRYTRTRDLYDDFA 238


>gi|146298178|ref|YP_001192769.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Flavobacterium johnsoniae UW101]
 gi|146152596|gb|ABQ03450.1| cytoplasmic peptidoglycan synthetase domain protein [Flavobacterium
           johnsoniae UW101]
          Length = 451

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 116/347 (33%), Gaps = 31/347 (8%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++           +++ P L+       K  S           +  + + G+ GK+++ 
Sbjct: 59  ITADIDAIILGMHAKADNPELLKAQELGLKIYSYPEFLYEQSKNKTRVVIGGSHGKTTIT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     +    I     + +  +           L +   ++  +G  ++    S
Sbjct: 119 SMILHV-----MHYHNIAVDYMVGAQLEGFDTMVH----LTEENDFMVLEGDEYL----S 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S    + +    +      + +  DHI+   T + Y   +  +F E +      +   +D
Sbjct: 166 SPIDRRPKFHLYQPNIALISGIAWDHINVFPTYENYVE-QFEIFIEKITNGGILVYNEND 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K V + A N   ++                       VT+ ++  + D    + G  
Sbjct: 225 PEVKRVSEAATNPIRKL-----------PYSTPEYSVADGVTL-LKTPEGDMPIEVFGAH 272

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N   A  +C  +G+D     E +        R E +    +G   Y D+AH+ + + 
Sbjct: 273 NLNNLAGAKWICQNMGVDEEDFYEAIASFKGASKRLEKI-AEGKGKVAYKDFAHSPSKVA 331

Query: 371 MILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIV 415
              K ++    +  ++               +   + AL+ AD+A+V
Sbjct: 332 ATTKAVKEQYPNRTLVACLELHTYSSLNAAFLKEYEGALEYADVAVV 378


>gi|237749090|ref|ZP_04579570.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes OXCC13]
 gi|229380452|gb|EEO30543.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes OXCC13]
          Length = 461

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 111/363 (30%), Gaps = 33/363 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +L V GT GK++  S +  I + +G S    IG        +        S  ++ +A  
Sbjct: 105 VLGVAGTHGKTTTTSMLAWILEDAGYSPGFLIGGVPLNFGISARLHGEKESSFFVIEADE 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y ++                       +       NL  DH D      A    +     
Sbjct: 165 YDTAFFDKRSKFVHY------------RPKTAILNNLEYDHADIFSDISAI-ETQFHHLV 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS 294
             +      I+   +   + V++R           G +GK    + +             
Sbjct: 212 RTVAGNGRLIVNNREPALERVVER--GCWSEKEWFGDEGKDSWSMAEKDDDDFDVFFDGQ 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G      + L GE    NAL A      +G+     ++ L +   V  R E  G N  
Sbjct: 270 YQGT---VHWDLTGEHNRLNALAAIAAARHVGVRPEQSIDSLSRFKNVKRRMECRG-NVG 325

Query: 355 GGRIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDL 409
           G  +Y D+AH   ++      LK       G+ I+              +   +  +L  
Sbjct: 326 GITVYDDFAHHPTAIATTIAGLKKKTASVPGQRILAVLEPRSNTMKLGVMKQALPQSLQE 385

Query: 410 ADIAIV----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD+          N    D E+    +      F +  +R+  +   I      D ++V 
Sbjct: 386 ADMVFAYGADGGKNGLGWDLEQALLPLGDRAKAFSDI-DRL--VDEIIMAAQPGDHVLVM 442

Query: 466 GKG 468
             G
Sbjct: 443 SNG 445


>gi|124265653|ref|YP_001019657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylibium
           petroleiphilum PM1]
 gi|124258428|gb|ABM93422.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylibium
           petroleiphilum PM1]
          Length = 574

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 120/340 (35%), Gaps = 40/340 (11%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  LD   + G    A    N+ +DH+D+H +  AY  AK R++        
Sbjct: 237 EAWVLELSSFQLD--GVRGFVPDAAVVLNITQDHLDWHGSMPAYAAAKARIYGPADAWGC 294

Query: 243 PAIIYADDAYSKEVM--------KRAHNAGCRVLSVGYQ--------------GKFIHLK 280
             ++  DD   + ++        + A     +V+  G                G    ++
Sbjct: 295 TMVVNRDDVQVEAMVPAPLPQKGRFAKPLARKVVRFGLDAPQRPGDYGLVVENGMAWLVR 354

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPG-------EFQVYNALVAAGLCIAIGIDSALVL 333
            + A    ++     E ++      +P             NAL A  L  AIG   A +L
Sbjct: 355 ALEADETIKRRKGDTEDEEIHLQRLMPADALRIRGRHNAANALAALALATAIGRPLAPML 414

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
             L +    P R  FV T   G   Y D       +    L+ +    +   +VV   G 
Sbjct: 415 HGLREYGGEPHRVAFVATVG-GVEAYDDSKGTNVGATVAALEGLGADKTPAKLVVILGGD 473

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
            + Q   P++  +A  +  +A++  D P       I A +  G            A R  
Sbjct: 474 GKGQDFTPLVAPVARHVRAVALIGRDAP------AIEAVLAAGSVPLARHDTLQTATRWC 527

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            E     D ++++     ++ +  N  ++  V CD +RE+
Sbjct: 528 FEQARAGDAVLLS-PACASLDMFRNYAQRAEVFCDTVREL 566


>gi|329115575|ref|ZP_08244297.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pomorum DM001]
 gi|326695003|gb|EGE46722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter
           pomorum DM001]
          Length = 499

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 116/359 (32%), Gaps = 42/359 (11%)

Query: 66  QGAEAIVVSSAYS----LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            G EA+++S             A +     I ++ +        A R  G      + +T
Sbjct: 102 NGFEALILSPGIPHVLPKPHPIALMAKEAGIPILSDAELLYR--AVRKSGS-KARFVGIT 158

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  + +  I   + L     G    +   A    L   + +Y+ +  SY+    
Sbjct: 159 GTNGKSTTTTLLAHILAEAKLPVAAGG---NLGPAALALPLLPDNGVYVLEMSSYMLE-- 213

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                           RLD ++  A    NL  DH+D H     Y  AK R+F     K+
Sbjct: 214 ----------------RLDTLRFDAACLLNLTPDHLDRHAGMDGYAQAKKRVFTGQTGKD 257

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DD + + +     +   +  ++                      I+  G    
Sbjct: 258 -MAVVGMDDTWCRTIAAELEHEPAKCETISGTNPTCSYYGKDGAIWHHSTCIAQTG---- 312

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG     NA  A  +   + +  A + + +     +P R + V  +  G     D
Sbjct: 313 --LSLPGAHNAENAAAAIAIARFLDVPDATIAQAVASFPGLPHRQKLV-ASCNGVDFVDD 369

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
              T+                   +V+  GG   +G    +      +A   ++  D P
Sbjct: 370 SKATNADAASRALGCYE------KLVWIAGGTAKEGGIASLTPYFPHIAHTFLIGRDAP 422


>gi|115375946|ref|ZP_01463194.1| folylpolyglutamate synthase [Stigmatella aurantiaca DW4/3-1]
 gi|115367029|gb|EAU66016.1| folylpolyglutamate synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 409

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 132/406 (32%), Gaps = 59/406 (14%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------- 151
           R+ L+              L V GT+GK S  +F       +G                 
Sbjct: 2   REALAALGHPERRYPS---LHVAGTNGKGSTCAFATAALSVAGHRVGLYTSPHLSRVNER 58

Query: 152 -----------TISSFAQDNRLTTPSPIYLAKALSYLSSQGV---THVSVEASSHGLDQH 197
                       +     +     P   +    L+Y     V    H + E  S  + + 
Sbjct: 59  FQVAGDDISDEVLGRRILEVLARYPEAAHTPAPLTYFEFATVVALWHFAQEGVSVAVLET 118

Query: 198 RLDG-------IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYAD 249
            L G       +  +  + T +  DH+DY   T +A    K  +   L P     +   +
Sbjct: 119 GLGGRLDATNTVTPLVTAITPVSFDHMDYLGNTLEAIAGEKAGI---LKPGVPAVLSRQE 175

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPL 306
               + +++ A   G  VL    + +   L        +   T +  G  F        L
Sbjct: 176 PEALRALVRVADEVGAPVL---LEDRDFALAS------EPGGTFAYRGTRFQLEGLSLAL 226

Query: 307 PGEFQVYNALVAAGLCIAIG-----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            G  Q  NA VA      +      + +      L       GR E +G       + +D
Sbjct: 227 RGLHQRQNAAVALAALEQLDARGVAVSAEAARAGLASARWP-GRLEELGCQPP---VLLD 282

Query: 362 YAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            AH    ++++L ++  +  GR +  VFG   D+D+G  P+M  +    A + +   D P
Sbjct: 283 GAHNPAGMKVLLASLEALYPGRALHAVFGVVADKDRG--PMMQGLFPRCASVHLTPLDTP 340

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           RS  PE+   E            +  +A+  A       DV++  G
Sbjct: 341 RSLPPERYLPEAQALCAAVYAYASLDDALAGARSQARPGDVILCTG 386


>gi|240104632|pdb|3HN7|A Chain A, Crystal Structure Of A Murein Peptide Ligase Mpl
           (Psyc_0032) From Psychrobacter Arcticus 273-4 At 1.65 A
           Resolution
          Length = 524

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/395 (15%), Positives = 114/395 (28%), Gaps = 49/395 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLA 171
              +++AV GT GK++  + +  I   +G+ +   IG    +++   + +       YL 
Sbjct: 120 QSRHVIAVAGTHGKTTTTTXLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLG 179

Query: 172 KALSYL---SSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAY 226
                     + G   +  +         R   +  +       NL  DH D      A 
Sbjct: 180 TEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAI 239

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-------SVGYQGKFIHL 279
                     +          A  +    + K       R         SV  +   +  
Sbjct: 240 QTQFHHXVRXIPSTGKIIXPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLEN 299

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGE------------FQVYNALVAAGLCIAIGI 327
            +     + Q   IS +G  F   F    E              V NALVA      IG+
Sbjct: 300 SQAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSXSGLHNVNNALVAIAAAYNIGV 359

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIV 386
                   L     +  R E +G +     ++ D+AH   ++   L    + +   R+  
Sbjct: 360 SVKTACAALSAFAGIKRRXELIG-DVNDILVFDDFAHHPTAITTTLDGAKKKLADRRLWA 418

Query: 387 VFGCGGDRDQ-GKRPIMGKIALDLADIAIVTD------------DNPRSEDPEKIRAEII 433
           +     +  + G        +  LAD  +  +            DN    +P     +++
Sbjct: 419 IIEPRSNTXKXGIHQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIANPSIGSQQVL 478

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +            I+         D +V+   G
Sbjct: 479 SSVDDI---------IKHICTHAKAGDAIVIXSNG 504


>gi|88704098|ref|ZP_01101813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Congregibacter
           litoralis KT71]
 gi|88701925|gb|EAQ99029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Congregibacter
           litoralis KT71]
          Length = 456

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 122/350 (34%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++ KS+V   +  + + +G ++   G                        AL
Sbjct: 117 APVIGITGSNAKSTVTEMLGAMVRAAGYTAGVGGNLGV-------------------PAL 157

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  +   +  +E SS  L+  R   + L   +  NL  DH+D H +   Y  AK R+F
Sbjct: 158 DLLDDRNELY-VLELSSFQLE--RAGALNLQVATVLNLTPDHLDRHGSMPRYHQAKHRIF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     +   DD  +  +   A         +G     +    +  I  +  +   
Sbjct: 215 NGC----KKVVYNLDDPLT--IPPLAAGRQQLSWRLGEP--DLQGFGLRDIDGEPTLVHG 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         LPG   + NAL A  L  AI +    ++  L +   +  R E V   S 
Sbjct: 267 FEPLLKASELALPGRHNLANALAALALGSAIDLPREAMMTVLREFSGLAHRCELV-LESG 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G R   D   T+  +   L  I  +     +++   G D+    R +   +A     + +
Sbjct: 326 GVRWINDSKATN--VGAALAAIEGLGESHRLILIAGGRDKGADFRVLKPAVAAHCDKVLL 383

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +  P       + AE +      +       A+ +A  +    D++++
Sbjct: 384 IGEAAP-------VIAEALGDAGDLLSVDTLEAAVASARAVAKPGDIVLL 426


>gi|307265320|ref|ZP_07546877.1| FolC bifunctional protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919604|gb|EFN49821.1| FolC bifunctional protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 427

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 140/411 (34%), Gaps = 65/411 (15%)

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152
           +N R+ L        G   +N+  + V GT+GK S ++F+  I Q++G            
Sbjct: 23  ENIRRLL-----NYMGNPQKNLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLE 77

Query: 153 -------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                  I+              Y+   +S +  +G  H +       +        K+ 
Sbjct: 78  EFEERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVD 137

Query: 206 ----------------------AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKES 242
                                     T +  DH D    T       K      ++ +  
Sbjct: 138 FVVLEVGLGGRFDATNAIDFSLVSVITTIDYDHTDRLGHTLGEIAYEKA----GIIKRNG 193

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             + +     + +V+  A       L+V  +        V          I    K  D 
Sbjct: 194 VVVSFYQQPEALKVIIEACEVRNAYLTVLEKS------NVIIKEQNPDFQIFDYKKYKDL 247

Query: 303 LFPLPGEFQVYNALVAAGLCIAIG-----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              L GE Q+YNA +A      +      I    + E L +     GR E +    +   
Sbjct: 248 KITLLGEHQIYNAALAIESVEKLKMYGYEITEKDIREGLYRAKWP-GRLEVM---RKKPY 303

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +D AH    + ++ ++++     ++I+V G   D+D  K      I +  A++ I T 
Sbjct: 304 VVIDGAHNPQGMTVLKESLKLFKYDKLILVIGMLKDKDTQKML---DIIVPEANMIITTT 360

Query: 418 DNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             P SE   K  +E+   I     I   N  EA++ A+++  ++D+++  G
Sbjct: 361 --PISERAYK-ASELAERIEKEKVIAIENIEEAVKYALDIAKEEDMVLFCG 408


>gi|262374698|ref|ZP_06067970.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter junii SH205]
 gi|262310354|gb|EEY91446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter junii SH205]
          Length = 453

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 114/364 (31%), Gaps = 33/364 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        +  +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFCVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    +    EV+  A      V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETNIDEVL--AQGCWTPVVRTSLEPNDQAALSAELISADGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   GK   +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGKAIGEVKWNMTGQHSVANALATIAAAQHVGVSLEQACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T  RG  +Y D+AH   ++E  L    + +   ++  +          G        +  
Sbjct: 324 T-VRGIEVYDDFAHHPTAIETTLDGARKRLGERKLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRI--EAIRTAIEMLNKQDVLVV 464
           LAD  I          PE +  ++   I     K   +R   + I   +    + D +V+
Sbjct: 383 LADEVI-------WYQPEGLDWDLQPVISASSNKAEVSRSLDDIIARVVNEAGEGDAVVI 435

Query: 465 AGKG 468
              G
Sbjct: 436 MSNG 439


>gi|160880895|ref|YP_001559863.1| FolC bifunctional protein [Clostridium phytofermentans ISDg]
 gi|160429561|gb|ABX43124.1| FolC bifunctional protein [Clostridium phytofermentans ISDg]
          Length = 424

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 123/387 (31%), Gaps = 42/387 (10%)

Query: 112 KHPENILAVT---GTSGKSSVASFVQQICQRSGLSSFQI---------------GPTSTI 153
            HPE  L      GT+GK S    +  I + +GL                    G   + 
Sbjct: 33  DHPEKKLKFIHVAGTNGKGSTCKMLSSILRCAGLKVGLFTSPFLETENEQIQINGEVISN 92

Query: 154 SSFAQDNRLTTPSPIYLA-------------KALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             FA+  +       YL               A  Y        V +E    G       
Sbjct: 93  EDFAKVCKKVKDFTTYLMLDEIPTEFELTTAMAFQYFYDTKCDLVVLEVGLGGELDATNV 152

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
               +    TN+G DH+DY  T       K      ++ +    + Y  +   +EV+K  
Sbjct: 153 IETPLVSVLTNIGIDHVDYLGTTLKEIACKK---AGIIKENGIVVSYEQEKEVEEVIKLT 209

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  L      +F  LK      ++Q+ +     ++ +    L GE Q  NA VA  
Sbjct: 210 CEERHNKLVF---AEFSELKLHQENLSRQKFSYK---QNTNLSLSLIGEHQRKNAAVALE 263

Query: 321 LCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           +   +  +   +    + +               +   + +D  H    +E   + ++  
Sbjct: 264 VIAQLQTLGYKISENAISEGMNYVTWPGRFEVLCKQPLVILDGGHNVQCVEAFSEVLKQF 323

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G+  +V   G   D+  + ++  +         VT  N R+   E++  E+    P  
Sbjct: 324 IPGKKAIVIL-GVLADKDYKGMIPYLVPFTKRFIAVTPKNTRALPSEQLAEELSKHHPLV 382

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 +E I  A+    + D++ V G
Sbjct: 383 SHNATPVEGIMAALRDAREDDIICVIG 409


>gi|84495980|ref|ZP_00994834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
 gi|84382748|gb|EAP98629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
          Length = 502

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 122/371 (32%), Gaps = 58/371 (15%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L VTGT+GK++    +  I + +G  +   G   T                      
Sbjct: 139 APWLTVTGTNGKTTTVQMLTSILRAAGKRAISAGNVGT------------------PILE 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +  +    ++VE SS  L  H  D I+  A    N+  DH+D+H + + Y  AK +++
Sbjct: 181 AIMDPEPFDAIAVELSSFQL--HWSDSIRPQASVCLNVAPDHVDWHGSYEDYLAAKGKVY 238

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSV----------GYQGKFIHLKKVC 283
                 +   I   DD  ++ +++ A    GCR +            G  G+ +  +   
Sbjct: 239 NN---TQVACIYNVDDPQTERLVEDAEVQEGCRAVGFTLGTPAPSMLGLVGEVLADRAFV 295

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    ++    D     P      V NAL AA L  A G+++  V   L+      
Sbjct: 296 EQRRHAAAELATID-DLRGDSPDVAPHLVANALAAAALARAHGVEAGAVRAGLKAFRPEA 354

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R   V T      +    A   ++    L     +           G  +      ++ 
Sbjct: 355 HRIAHVATLEDVRYVDDSKATNPHAAAASLTAYEHVVW------IAGGLLKGADVDDLVR 408

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---------NRIEAIRTAIE 454
             A  L  + ++        D  +I   +    P               +R+  +  A  
Sbjct: 409 TAAPSLRGVVLI------GRDRAQIADALARHAPDVPVVDVADTDTGVMDRV--VSQAAS 460

Query: 455 MLNKQDVLVVA 465
           +    DV+++A
Sbjct: 461 LAQSGDVVLLA 471


>gi|294501413|ref|YP_003565113.1| folylpolyglutamate synthase [Bacillus megaterium QM B1551]
 gi|294351350|gb|ADE71679.1| folylpolyglutamate synthase [Bacillus megaterium QM B1551]
          Length = 432

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 146/407 (35%), Gaps = 62/407 (15%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           +     + +   N + V GT+GK S  S+++ + + +G     +G  ++      + R++
Sbjct: 30  MLEQLDFPQQNLNAIHVAGTNGKGSTVSYLRNMLEEAGYK---VGTFTSPYIETFNERIS 86

Query: 164 TPSPIYLAKALSYLSSQ-----------------GVTHVSVEASSHGLDQHRLDG----- 201
                   +A++ L  +                     ++V A  +      +D      
Sbjct: 87  VNGKPISNEAMTALVQEIKPVVERLEHTNLGSATEFEVITVMAFLYFGYHESVDYAVFET 146

Query: 202 -----------IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYAD 249
                      +  +    TN+G DH+     T +     K  + ++ +P  + A     
Sbjct: 147 GLGGRYDSTNVVNPMVSIITNIGFDHMAILGDTVEEIAAEKAGIIKKEVPIITGA----- 201

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPG 308
               K +      A  +  S+   GK   +K    + N +   + +    F+ L   + G
Sbjct: 202 -EQVKALDVITEEAKSKQASLFVLGKDFDIKNYEPLANGEGFALKMPYGTFEHLELNMLG 260

Query: 309 EFQVYN-ALVAAGLCIA-----IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             QV N AL    +C       + I    +++ ++      GRFE V  +       +D 
Sbjct: 261 YHQVKNAALAVMAVCYLKEKKKLSISKEQMIKGIQHTKW-NGRFEIVNEH---PLTIIDG 316

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNP 420
           AH +  ++ +L  +R       I +VF C  D+   +   M +    +A     T  D P
Sbjct: 317 AHNAEGIDSLLSTLRLHYEDRSIHLVFSCLNDKSADR---MVQELETIAASITFTSFDFP 373

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           R+   +++     H      E+    +AI    E    +QD++V+ G
Sbjct: 374 RARPAQELYEMSTHHNKHMDEEW--KKAIAYVKEKATGEQDMVVITG 418


>gi|319944584|ref|ZP_08018852.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Lautropia mirabilis ATCC
           51599]
 gi|319742121|gb|EFV94540.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Lautropia mirabilis ATCC
           51599]
          Length = 461

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 96/309 (31%), Gaps = 28/309 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ V GT GK++ AS +  I Q +G     +     +      +      P ++ +A 
Sbjct: 103 RWVMGVAGTHGKTTTASLLAWILQAAGREPGFL--IGGVPGNFPVSARLGRKPYFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++                       +       NL  DH D      A    +    
Sbjct: 161 EYDTAFFDKRSKFVHY------------RPRTAVLNNLEYDHADIFPDLGAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI- 293
              +P +   I  +D    + V+ R     C   +        H   V    +    T+ 
Sbjct: 208 VRTVPGQGRIIWPSDSEALQRVLARG----CWSQTEALGAGGWHASDVTEEADATVFTLW 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + +      PL GE    NA+ A      IGI     +E L     V  R E  GT  
Sbjct: 264 RGDVEQGRVRLPLAGEHNRANAIAAIVAAEHIGITPTESIEALAAFQGVRRRLEVRGTVG 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR------TITSGRIIVVFGCG-GDRDQGKRPIMGKIA 406
            G  +  D+AH   ++   +  +R      +   GR++ V          G        +
Sbjct: 324 -GVTVIDDFAHHPTAIATTIAGLRARMQAGSHPGGRLLAVLEPRSNTMRTGTLKAQLPGS 382

Query: 407 LDLADIAIV 415
           L  AD+   
Sbjct: 383 LQDADLVFC 391


>gi|224372973|ref|YP_002607345.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
 gi|223589775|gb|ACM93511.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
          Length = 470

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 138/362 (38%), Gaps = 43/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A     K    I+A+T + GK+S+ +F+ Q+ + +          +T+    +D  + 
Sbjct: 141 KLAKEKLTKIDPKIVAITASYGKTSIKNFLYQLLEGTFKVYKTPRSVNTLKGIIKDINVD 200

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P  I +  A +    +G                 ++ ++        +G  HI+Y +T 
Sbjct: 201 MPENIEIYIAEAGAREKGD------------ILEIVEFLENEYSILGKIGPQHIEYFKTL 248

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                 K+ +F+    K+  +    +  Y+++V+   +                 +K + 
Sbjct: 249 DNIKQTKLEIFKTPKLKKGFSY---EVPYNEKVLVIKNK----------------IKNIK 289

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           A  N  +  + +  +   F   L G F   N  +A    +  G+    + + + KL  +P
Sbjct: 290 ASLNGIEWEVEINDRIHKFECKLLGGFNAVNVTLAIFQALEFGLSVEELKQKVLKLESIP 349

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPI 401
            R + +     GG+I +D +   N LE ++++   +    G+ I+V     +    +   
Sbjct: 350 HRLQKIEV---GGKIIIDDSFNGN-LEGMIESYELVKEYKGKKILVTPGIVEATDEQNKQ 405

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           + K   ++ D+ I+T     S + + +   I++     I   ++ +  +   E     D+
Sbjct: 406 LAKKIDEVFDLVILTG----SINKKVLCENIVN--TDKIILNDKKDLEKILAENTKAGDL 459

Query: 462 LV 463
           ++
Sbjct: 460 IL 461


>gi|94498175|ref|ZP_01304736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
 gi|94422305|gb|EAT07345.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
          Length = 443

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 99/305 (32%), Gaps = 46/305 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            G + IVVS    L      +R+     PI+        + LFA       P  ++ +TG
Sbjct: 63  AGFDGIVVSPGVPLNRHPINMRAKLAGVPII------GDIELFALARPTLPPHKVVGITG 116

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  + +  I +++G  +   G                P    L         +G 
Sbjct: 117 TNGKSTTTALIHHIIEQAGYPTVMGGNIGL------PILSQPPLEPNL---------KGA 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS+ +D      +        N+  DH+D +   + Y  +K RLF        
Sbjct: 162 GVYVLELSSYQIDL--THSLDCDVAVLLNITPDHLDRYDGFEGYVASKARLFAMQSAGHK 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I   D+           +          +G    + +V +        ++        
Sbjct: 220 AVIATEDEP----------SRSVSTQICDTKGSGEDVVEVASTQVDTTEQLAWP------ 263

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G     N  VA      + ID       L     +P R + V T    G +YV+ 
Sbjct: 264 --ALQGPHNAQNVAVAMVTAAVLDIDPVTTKAALASYASLPHRMQTVRT--LNGVLYVND 319

Query: 363 AHTSN 367
           +  +N
Sbjct: 320 SKATN 324


>gi|78779845|ref|YP_397957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9312]
 gi|118595673|sp|Q319C4|MURD_PROM9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78713344|gb|ABB50521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 468

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 94/274 (34%), Gaps = 33/274 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + +TGT+GK++V   +  I   + L +   G   T                 L K   
Sbjct: 121 NWIGITGTNGKTTVTHLLSHILCENKLYAPFAGNIGTP----------------LCKYAY 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + +  V  E SS+ ++      +K   G +T    DH++ H+T + YFN K  L  
Sbjct: 165 SKKYEKIDWVVAELSSYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSL-- 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L K    I   DD   +              S+            C      Q  I  
Sbjct: 221 --LEKSDFRIYNYDDKNLRNHYSSLSKGVWITTSLDKSN-----FIQCDYWIDDQAFIIE 273

Query: 296 EGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            GK       F L G   + N L+       +G+    + + L     +P R E +  N+
Sbjct: 274 RGKRLFKLEHFSLKGIHNLQNLLLVIAAARKVGLSGKKIKDSLSNYKQLPHRMETIYKNN 333

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               I    A   +S    + +I     G+II++
Sbjct: 334 DLEIINDSKATNFDSSIAGINSIE----GQIIII 363


>gi|291534965|emb|CBL08077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis M50/1]
          Length = 401

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 113/351 (32%), Gaps = 64/351 (18%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +  + ++ +TGT GKS+ ++ +  + +          P   + +  Q          
Sbjct: 81  FLQQFRDQVIGITGTKGKSTTSAMLYTVLKACSSR-----PVLLLGNIGQPCLDYFEEVT 135

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                         T +  E S H L       +      F NL  +H+DY+ T + YF 
Sbjct: 136 E------------DTIIVYEMSCHQLAH---TNVSPHIAIFLNLYEEHLDYYGTVEKYFE 180

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +                          A+        VG        + V  I  K
Sbjct: 181 AKSHI-------------------------AAYQKSGDYFFVG--------ENVPQIDTK 207

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q T+  + K   +   L GE   Y+A     +   +G +   VL+ +     +P R ++
Sbjct: 208 AQRTVLHQPKGVHYELKLAGEHNQYDAQFVERVAELLGCEKEAVLKSMADFEGLPHRLQY 267

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VGT  RG R Y D   T    E  +    +I   +   V   G DR      ++  I   
Sbjct: 268 VGT-YRGVRYYDDSISTIP--EAAINAAMSIPDAK--TVLIGGMDRGINYDLLVAFIREH 322

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                I           ++I  E+       +   +  +A+  A++M    
Sbjct: 323 KEFQFIC-----AYASGKRIFGEVGD-CENCVYAEDLEQAVEAAVQMTEPG 367


>gi|261867478|ref|YP_003255400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412810|gb|ACX82181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 434

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 139/394 (35%), Gaps = 54/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + VV +   F          +  + I+A+TG++GKS+V 
Sbjct: 68  IVISPGLAVKTPEIQTALQAGVEVVGDIELF--------CREADKPIVAITGSNGKSTVT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +GL     G                        ALS L+ Q      +E S
Sbjct: 120 TLVAEMAKAAGLRVGMGGNIG-------------------IPALSLLNQQH-DLYVLELS 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K +A +  N+  DH++ +   Q Y +AK+ ++         A+I A+D
Sbjct: 160 SFQLE--TTYSLKAVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNHC----QTAVINAED 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A +    +R        +S G       LK     +NK  +    E         L G  
Sbjct: 214 ALTLPTTQRPQKQ----VSFGENHADYWLKT---ENNKTYLMAYDEAVLACDEMKLTGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A  L  A GI+   +   L     +  RF+ V   + G R   D   T+    
Sbjct: 267 NYMNALAAIALAQAAGINLTGIRTALCAFGGLEHRFQ-VAHIADGVRWINDSKATNVGST 325

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       +     +++ G G   D      + ++                  D  K  A
Sbjct: 326 VAALTGLQVAGKLHLLLGGDGKGADFS---ELARLINQPHIYCYC-----FGRD-GKQLA 376

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +      F    + I AIR     L   D++++
Sbjct: 377 ALSSQSQLFDTMEHAIAAIR---PQLQAGDMVLL 407


>gi|114327095|ref|YP_744252.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315269|gb|ABI61329.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 462

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 136/387 (35%), Gaps = 49/387 (12%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A + +  P+L   +        A RL G      + +TGT+GKS+  +    I + +G  
Sbjct: 87  AALLAGVPVL--SDAELLYQ--AVRLSGSR-ARFVGITGTNGKSTTTALTAHILREAGCP 141

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G    +   A    L   + +Y+ +  SY+                    RL  ++
Sbjct: 142 VAAGG---NLGPAALALPLLPDNGVYVLEMSSYMLE------------------RLQTLR 180

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A +  NL  DHID H     Y  AK  +F+     +  A+I  DD  S  + +     
Sbjct: 181 FDAAAMLNLSPDHIDRHGDMAGYETAKREIFQRQTGAD-LAVIGIDDPLSAAMAETLRKD 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGL 321
           G         G      +         +T  ++G     +    LPG     NA VAA +
Sbjct: 240 GHPARIALVSGALCGDTQAEYGMQFGTLT-DMQGPILPMVQAAALPGAHNAQNAAVAAAI 298

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +G+    V   +     +P R E +        I    A  ++S    L        
Sbjct: 299 TLFLGVKREQVAAGVASFPGLPHRQERIAEADGILWINDSKATNADSTARALIC------ 352

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII--HGIPGF 439
               +++  GG   +G    +  +   +    ++  D P       I AE +  HG+P  
Sbjct: 353 -HERILWIAGGIAKEGGIEDLAPLLPRVTHALLIGRDAP-------ILAETLRAHGVP-H 403

Query: 440 IEKGNRIEAIRTAIEMLNK--QDVLVV 464
            + G    A+  A  ++ +   +++++
Sbjct: 404 TDAGTLDNAVTMAAALVKESGSNIVLL 430


>gi|291087162|ref|ZP_06571832.1| tetrahydrofolate synthase [Clostridium sp. M62/1]
 gi|291075829|gb|EFE13193.1| tetrahydrofolate synthase [Clostridium sp. M62/1]
          Length = 469

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 140/412 (33%), Gaps = 63/412 (15%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS- 154
           D+ R  +      L       ++ V GT+GK SV +F+  I + +G  +        +S 
Sbjct: 60  DDIRAMMKAMGLSLDK---IRLIHVAGTNGKGSVCAFLSSILREAGEHTAVFTSPHLVSV 116

Query: 155 -------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH----GLDQHRLDGI- 202
                        +    +   + + L  L S G+TH +           + Q R     
Sbjct: 117 RERFCFDGEQAGEKEFLQAFYRVREGLCRLQSLGLTHPTYFEFLFLMFAAMMQSRKGFTA 176

Query: 203 -----------------KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
                            +      T++  DH++Y   T +     K  + +  +P     
Sbjct: 177 VVETGLGGRLDATNAVDRPTLCVLTSISLDHMEYLGNTVELIAGEKAGIIKPGVP---VV 233

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               D A +  +  RA        +VG            ++     + I   G++     
Sbjct: 234 YDSTDPAAAAVIRDRARELKSPARAVGTDS------FSESVLKDGHLFIRKNGEE-PLEI 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P   ++Q  NA++A      +GI    V E L+K        E +        +Y+D AH
Sbjct: 287 PFAAQYQAVNAMLAVQAAEILGIPERAVREGLQKTVWPGRMEEIMPG------VYLDGAH 340

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDD-NPR 421
               +    +   +++  R I++F    D++      M +I L     D+ I+T     R
Sbjct: 341 NEGGIRAFARAAASLSGKRKILLFAVSSDKEY---REMAEILLREFAPDVLILTQIAYGR 397

Query: 422 SED----PEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             D     E  R  +       P    + +  EA+ TA++   ++D +  AG
Sbjct: 398 GLDIHRLEEASREAMAKAGGHGPRLFVRPSAEEALLTALDEKGEEDTVFCAG 449


>gi|256545401|ref|ZP_05472764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398962|gb|EEU12576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 436

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 113/337 (33%), Gaps = 44/337 (13%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I  +SG  +  +G                         L  +       V   +S
Sbjct: 112 SLISHILNQSGKKAIGVGNIG-------------------EGILWQMYKNDEIFVEEISS 152

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 H     K       N+  DHID+H + + Y   K+++      +    II  DD
Sbjct: 153 FQ---LHNTKFFKPHIAGILNITPDHIDWHGSFENYIEDKLKIAINQ-NESDYLIINHDD 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                +MK  +    ++     + +       K  +++ K +  I +  +D      + G
Sbjct: 209 E---ILMKNKNKFKAKIYEFSIKEEVQRGIYLKDDSLYLKDEKEIYLLKRD---DLKIVG 262

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N   A       G+D   ++++ +    +  R EFV    R    Y D   T+  
Sbjct: 263 DHNLLNVSCAILCLYLFGLDLDEIIKYTKTFKAIDHRLEFVK-KIRNVSFYNDSKATN-- 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           ++  +K I +      +++   G D+     P+       +  + ++          ++I
Sbjct: 320 VDSAIKAINSFDKN--VILIAGGYDKKIDYTPLFKNTKKKIKTMILMGQ-------TKEI 370

Query: 429 RAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +       +    +  EA+  + E++   D +++
Sbjct: 371 LQNLCEKYKINYYLVNDMKEAVNKSFEIMKDFDTVLL 407


>gi|226323684|ref|ZP_03799202.1| hypothetical protein COPCOM_01459 [Coprococcus comes ATCC 27758]
 gi|225207868|gb|EEG90222.1| hypothetical protein COPCOM_01459 [Coprococcus comes ATCC 27758]
          Length = 453

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 100/269 (37%), Gaps = 18/269 (6%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +        +  N+  DH++ H T +AY  AKM + +   P++   + Y D    +E  K
Sbjct: 173 IHTFHPKVSAVLNITPDHLNRHHTMEAYIRAKMNIAKNQTPEDICVLNYED----EETRK 228

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNAL 316
            A      VL    + K      +       +     EG          + G     N +
Sbjct: 229 MADEFQASVLFFSSKHKLEQGIYLDGEDIVYKPEKEKEGTVICKTGELQILGVHNYENVM 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +  A G+D  ++ + +     V  R E+V    + G +Y + +  +N  +  +K I
Sbjct: 289 AAVAMAAAYGVDLDVIRKSVLAFKGVEHRIEYVAE--KNGVVYYNDSKGTNP-DAAIKGI 345

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-G 435
           + +    I++  G G D+       +      +  + ++          E+I+ E    G
Sbjct: 346 QAMNRPTILI--GGGYDKQSDFHEWIQSFDGKVRYLVLI------GATKEQIQKEAAECG 397

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I K    EA+ T +E+    D +++
Sbjct: 398 FHDCILKDTFEEALDTCVELARPGDAVLL 426


>gi|156741086|ref|YP_001431215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|189082915|sp|A7NI97|MURD_ROSCS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156232414|gb|ABU57197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 472

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 101/304 (33%), Gaps = 24/304 (7%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G+       T +  DH+D H T +AY  AK  ++    P + P ++ AD    + +   
Sbjct: 177 AGLSPKIACITTIAPDHLDRHGTMEAYIQAKEEIWRHQRPGD-PVVLCADSPIMRAMAVV 235

Query: 260 AHNAGCRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
               G  V   G +G            F    ++       + +I+           LPG
Sbjct: 236 DRRPGDMVWFAGAKGSDVYRLKGDRRAFWRGDELIWHDRSTEGSITHTVICTRDDVRLPG 295

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N   A     A GI    +   +     V  R EFV          V Y + + +
Sbjct: 296 AHNLANIAAATAAACAFGIAPEHIRRAVRAFAGVEHRLEFVRELDG-----VCYINDTAA 350

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
                      T    IV+   G D++        +IA   + + ++      S  P+ +
Sbjct: 351 TAPEAAIAALRTFDAPIVLIAGGADKNLPFDAFAREIAQRASAVILLQG----SATPKLL 406

Query: 429 RAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            A         I     +  +A+ TA  +    ++++++  G  +  +  N   +     
Sbjct: 407 DALRAARASVAIHGPYDDFEQALDTARRIAAPGEIVLLS-PGCASFGMFRNEFHRGDTFR 465

Query: 487 DIIR 490
            I++
Sbjct: 466 RIVQ 469


>gi|92113659|ref|YP_573587.1| UDP-N-acetylmuramate [Chromohalobacter salexigens DSM 3043]
 gi|91796749|gb|ABE58888.1| UDP-N-acetylmuramate [Chromohalobacter salexigens DSM 3043]
          Length = 456

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 126/410 (30%), Gaps = 40/410 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++ +A S  +       N  +  V          A ++       ++AV GT GK++ A
Sbjct: 65  VIIGNALSRGNPEVEAVLNAKLPYVSGP----QWLAEQVL--PGRRVVAVAGTHGKTTTA 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I + +G +   +       +    +RL  P   ++ +A  Y ++           
Sbjct: 119 SLLTWILEAAGQAPGFL-IGGVPRNLGVSSRLGEPGAPFVVEADEYDTAFFDKRSKFVHY 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P +   ++ A +
Sbjct: 178 ------------RPDIAVLGNLEFDHADIFPDLAAIERQFHHLV-RTVPGQGQLVVAAGE 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + V+  A      V+  G         ++ +    ++  +    +     + L G  
Sbjct: 225 PALERVL--AQGCWSPVVRFGASDDASWQWRLESAD-GRRFAVRHGERVAHVDWALSGRH 281

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NA+ A     A G+        L +      R E  G    G ++  D+AH   ++ 
Sbjct: 282 NVANAVAALAAASACGVALEAGAAALARFESPRRRQEVRGEVG-GIQVIDDFAHHPTAIA 340

Query: 371 MILK--NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             L+     T     + V+         G        ++  AD             PE  
Sbjct: 341 ATLEGLAAATDAGRLLAVIEPRSNTMRLGSMRERLPDSVAAADRVW------WYRPPEVE 394

Query: 429 --RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG-----HE 470
                +    P      + + A+  AI       D +VV   G     HE
Sbjct: 395 WSLEALAAACPVPATVSDEMPALVAAIVAEARPGDRIVVMSNGAFGGIHE 444


>gi|167031608|ref|YP_001666839.1| UDP-N-acetylmuramate [Pseudomonas putida GB-1]
 gi|166858096|gb|ABY96503.1| UDP-N-acetylmuramate [Pseudomonas putida GB-1]
          Length = 449

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 130/404 (32%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGVPQNFSVS-----------ARLGDTPFFVVEADEY 162

Query: 191 SHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +          NL  DH D      +       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLP 307
            +   + V+         V + G  G++   +      +  +  +  EG+    + + L 
Sbjct: 222 TEQALERVIGM--GCWTPVQTTGEGGQW---QARLLSPDGSRFEVLFEGEAQGVVDWALT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  A+ +  L     V  R E V    +G  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPAMGIAGLSAFKSVKRRMEKV-AEVQGVTIYDDFAHHPT 335

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R  +    +I V     +  + G        +++ AD  I         D 
Sbjct: 336 AIATTLDGLRKRVGEAPVIAVIEPRSNSMKLGAHRDGLPESVNDADQVIWYAPANLGWDL 395

Query: 426 EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
               A+            + +EA I            +V+   G
Sbjct: 396 AATAAQ----CKVPSVVADSLEAIIERVKGQARPGTHVVIMSNG 435


>gi|89902196|ref|YP_524667.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodoferax
           ferrireducens T118]
 gi|118595682|sp|Q21SW7|MURD_RHOFD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89346933|gb|ABD71136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodoferax
           ferrireducens T118]
          Length = 506

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 149/445 (33%), Gaps = 67/445 (15%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT-PILVVDNTRKF-----LSLFASRL 109
              FI  A    A  +V +   ++         +   ++   NT        L LF+  L
Sbjct: 53  AAQFISGAFD--AALVVGTDVRAVFKSPGLSPLDVATVIEAANTIGIRATGELGLFSQAL 110

Query: 110 -----YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                   +   +LAVTGT+GK++V +    + +R G S    G    I     D  +  
Sbjct: 111 ADLKATQNYTPKVLAVTGTNGKTTVTALTGLLVERGGKSVAVAG---NIGPTLLDTLIQH 167

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            +   L +              +E SS  L+     G +  A +  N+ +DH+D+H +  
Sbjct: 168 LAAGTLPE-----------VWVIELSSFQLEGET--GFEPSAAAVLNITQDHLDWHGSMA 214

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR------VLSVGYQ----- 273
           AY  AK  +F          I+  +D     ++        +       ++ G       
Sbjct: 215 AYVAAKAHVFGA----TGLMILNREDPQVMAMLPEPVRVKLQRPQLRAHVTFGADLPRRP 270

Query: 274 --------------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +   +       +   + ++         + G     NAL A 
Sbjct: 271 GDFGLEQVNGMLWLVRALEADETLKNRKGETPELFLQRLMPADALRIRGRHNAVNALAAL 330

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A G     +L  L      P R   +G  +     + D +  +N +   +  +  +
Sbjct: 331 ALAQAAGCALGPMLYGLRDYRGEPHRVAPIGIFNEVE--FFDDSKGTN-VGATVAALAGL 387

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            S R ++V   G  + Q   P++  ++     + ++  D P       +RA +       
Sbjct: 388 GSERKVIVILGGEGKGQDFAPLVDPVSRYARAVVLIGRDAP------LLRAALQATHVPL 441

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +E  +  +A+  A    +  D +++
Sbjct: 442 LEAESMAQAVALANAQAHAGDAVLL 466


>gi|167574659|ref|ZP_02367533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia oklahomensis C6786]
          Length = 470

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 115/360 (31%), Gaps = 28/360 (7%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK++ +S +  I + +GL+   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGLNPGFL-----IGGVPLNFGVS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +   + V+ R       V   G  G +  L     +   ++  + 
Sbjct: 208 VRTVPGVGRLVTNGREDALERVLSR--GCWSDVERFGVDGGWQALPAEDGVPVDERFAVY 265

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +      + + GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 266 WRSERVGAVDWQVQGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCG-GDRDQGKRPIMGKIALDL 409
            G  +Y D+AH   ++E  +  +R    G   RI+ V          G        +L  
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGGENSRILAVLEPRSNTMKLGTMKAQLPASLAD 384

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           AD+      +   +       + +  +       + + A+  A+       D ++V   G
Sbjct: 385 ADLVFGYGASTGRDALGWSLPDALAPLGDKAHAFDDLHALVKAVTAAARPGDHVLVMSNG 444


>gi|283458379|ref|YP_003363003.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rothia mucilaginosa
           DY-18]
 gi|283134418|dbj|BAI65183.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rothia mucilaginosa
           DY-18]
          Length = 528

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 128/419 (30%), Gaps = 60/419 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S                 I +  +      L  +    +     L +TGT+GK++  
Sbjct: 116 VVTSPGVRPDHPVMLDAYERRIQIWGDVELAWRL--NERNDRPTPKWLCLTGTNGKTTTV 173

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  I + +G  S Q+G       +                  +    +     +VE S
Sbjct: 174 GMVDSILKAAGKKSIQVGNVGMPIVY------------------AIADDEPYEFFAVELS 215

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAII 246
           S  L  H    +   A    N+  DH+D+H +   Y   K R++E      +        
Sbjct: 216 SFQL--HWTYSMSPYASVVLNIAEDHVDWHGSFDGYKADKARVYEHTQVACIFNTDHVDT 273

Query: 247 -----YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                 AD       +  +      V  +G     +  +        +   ++V      
Sbjct: 274 LRMVENADVIEGARAIGFSSTEMPAVSMLGLAEDIMVDRAFLKNRYNEAYELAVLEDLAP 333

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +P +  V NAL AA LC A  ID   V   L        R + VG  +    +   
Sbjct: 334 APGKMPAKHTVENALAAAALCRAADIDPKAVGAGLRSFKTGAHRNQLVGYANDIMWVNDS 393

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNP 420
            A   ++    +        G   +V+  GG  +      ++   A  L  + I+  D  
Sbjct: 394 KATNPHAANASMS-------GYPSLVWIAGGLSKGVEYDELIAAHAKRLKAVLIIGTDT- 445

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-----AIEM---------LNKQDVLVVA 465
                  +++ + +  P  +   N   A+       A+            +  D +++A
Sbjct: 446 -----AALKSALANHAPQ-VPTYNMTAAVADSSDGVAVMNAAVAKAAELAHPGDTVLMA 498


>gi|196230910|ref|ZP_03129771.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chthoniobacter
           flavus Ellin428]
 gi|196225251|gb|EDY19760.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chthoniobacter
           flavus Ellin428]
          Length = 445

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 27/281 (9%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +++E SS  L+  R          +     DH+D +++   Y+ AK+R+FE     + 
Sbjct: 162 DVMTLEVSSFQLESIR--RFHCQTSVWLGFAADHLDRYRSMDEYYVAKIRIFENQTEDDW 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             + Y D         +      + ++        ++        +  +    E      
Sbjct: 220 AIVNYRD---------KLPALKAKKITFSA-----YVPDGDFSLREGVIHFRGERVLAMS 265

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G     N +   G+    G+  A +L  L +   +P R E + T +    +    
Sbjct: 266 ETNLRGSHNAENLMATLGVGFVRGLSFAQMLPPLREYKPLPHRCEILRTVNGAEWVNDSK 325

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +S+E  L      +  R +V+   G D+      +   +A     + ++       
Sbjct: 326 GTNPDSVEKAL-----HSETRPVVLIAGGKDKGFEYDLLTDLVAARCRSVVVM------G 374

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           E  ++I A     +P      +  +A+  A       DV++
Sbjct: 375 EMADRIEAIWKSRLPVANAGRSLEKAVELAHAAAQPGDVVL 415


>gi|160896938|ref|YP_001562520.1| UDP-N-acetylmuramate [Delftia acidovorans SPH-1]
 gi|160362522|gb|ABX34135.1| UDP-N-acetylmuramate [Delftia acidovorans SPH-1]
          Length = 479

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 117/368 (31%), Gaps = 22/368 (5%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P ++LAV GT GK++  S +  I + +GL+   +        F    RL   S  
Sbjct: 109 HHPSCPRHVLAVAGTHGKTTTTSMLAWILECAGLAPGFL-VGGVPLDFGVSARLGASSRP 167

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
              +  +      V       ++    + +    +       NL  DH D  +   A   
Sbjct: 168 TPGQGPAGAEPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFEDLGAIER 227

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               L    +P     ++   +     V+ +       V S G       +    A  + 
Sbjct: 228 QFHHLV-RTVPASGRLVVNGIEESITRVLHQ--GCWSEVSSFG-----SVVSDFSAQGDP 279

Query: 289 QQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               +   G       + L GE    NAL A      +G+  A   E L +   V  R E
Sbjct: 280 GAFDVLHRGHKVARLEWALTGEHNQLNALAAIAAAEHVGVTPAQACEALARFQNVKRRME 339

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVFGCG-GDRDQGKRPIMGK 404
             G    G  +Y D+AH   ++   L  +R    +  RI+ VF         G       
Sbjct: 340 LRGMAG-GVSVYDDFAHHPTAIRTTLDGLRRKLGSQARILAVFEPRSNTMKLGTMKSQLP 398

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI----EMLNKQD 460
            AL+ AD+      +    D +   A    G+ G   K      I T I          D
Sbjct: 399 WALESADLVFC---HTAGLDWDAAEALRPLGV-GAGHKAQVAADIDTLIGQIRAAARTGD 454

Query: 461 VLVVAGKG 468
            +V    G
Sbjct: 455 HVVCMSNG 462


>gi|148273042|ref|YP_001222603.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830972|emb|CAN01917.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 514

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 107/304 (35%), Gaps = 32/304 (10%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + VE SSH L  H +  ++  + +F NL  DH+++H ++ AY  AK R++ + 
Sbjct: 182 HPDGFDVLVVELSSHQL--HYMREVRPYSSAFLNLADDHLEWHGSRAAYAAAKGRVYAD- 238

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--------FIHLKKVCAIHNKQ 289
             + +     AD A    + +     G R +  G               L     +  + 
Sbjct: 239 -TRVACVYNRADRATEDALREADVQDGARAIGFGLDAPGPSDLGIVDGILCDRAFLEERF 297

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              + +   D      L     V N L AA L  + G++  +V + L +  +   R E +
Sbjct: 298 TSALELTTLDELRAVGLAAPHIVQNILAAAALARSYGVEPGVVRQALLRFELDSHRIERI 357

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G       +    A   ++    L    ++    + VV   G  +      ++   A  L
Sbjct: 358 GERDGVAFVDDSKATNPHAASASLAAFPSV----VWVV--GGLLKGVELDDLIRAHAARL 411

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGN----RIEAIRTAIEMLNKQDV 461
               ++        +  ++ A      P        + +       A+R A  +  + D 
Sbjct: 412 RAAVVI------GVERVEVLAAFARHAPDVTVLEVAESDTEQVMRSAVRLAAGVAREGDT 465

Query: 462 LVVA 465
           +++A
Sbjct: 466 VLLA 469


>gi|326390357|ref|ZP_08211916.1| domain of unknown function DUF1727 protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993634|gb|EGD52067.1| domain of unknown function DUF1727 protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 451

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 117/375 (31%), Gaps = 62/375 (16%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
             K+ S    +L G    N + +TGT+GK++ +  +  I   +G S       + + +  
Sbjct: 31  ALKYDSKLIEKLIGPIKNNKVIITGTNGKTTTSGLIASILTTAGKSVVHNKEGANMKTGI 90

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
               +   S  +L       +   V   ++           ++ +K      TN  RD +
Sbjct: 91  ATALIK--SSNFLGNLQKDATVFEVDEANMPIV--------IEDVKPNIVVITNFFRDQL 140

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------------------ 259
           D +         K++     LP++S  ++ AD+ ++  +                     
Sbjct: 141 DRYGELDTTVE-KVKKALLNLPQDSIVLLNADEPFTASIGDEIKSKVFYYGVEDNIEGIN 199

Query: 260 ------------AHNAGCRVLSVGYQGKFIH-------------LKKVCAIHNKQQVTIS 294
                       AH    + +  G  G +                  +    +     + 
Sbjct: 200 SSSFEQKYCPICAHKYEYKKIYYGQLGDYYCPNCGKKRPNPHFKATNIFLNEDGINFNLY 259

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + K F     L G + VYN L A    I + ID + +L+ +E    + GR +     S+
Sbjct: 260 YKDKIFTVKSRLIGLYNVYNLLAAISAGILLNIDFSTILKAIESYWPIEGRLQKTKIKSK 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-----ALDL 409
             R  ++        E  L  +        +++       D      +  +         
Sbjct: 320 --RTIINLIKNPIGFESTLNMLSQFNKPLNLLISINDNYADGRDVSWLWDVNLESFLSKT 377

Query: 410 ADIAIVTDDNPRSED 424
               IVT    R+ED
Sbjct: 378 KVNYIVTS-GLRAED 391


>gi|46199025|ref|YP_004692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermus
           thermophilus HB27]
 gi|55981051|ref|YP_144348.1| UDP-N-acetylmuramoylalanine--D-glutamiate ligase [Thermus
           thermophilus HB8]
 gi|62900672|sp|Q5SJD2|MURD_THET8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900686|sp|Q72JQ1|MURD_THET2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46196649|gb|AAS81065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermus
           thermophilus HB27]
 gi|55772464|dbj|BAD70905.1| UDP-N-acetylmuramoylalanine--D-glutamiate ligase [Thermus
           thermophilus HB8]
          Length = 417

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 131/394 (33%), Gaps = 69/394 (17%)

Query: 74  SSAYSLQDFSATIRSNTPIL--VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
             AY     +  +  + P L  +     K L   A   Y   P  I+ +TGT+GK+S   
Sbjct: 52  EEAYEEVVAAPGVPLDHPHLKRLAARGAKVLGE-AELAYRLSPTPIVGITGTAGKTSTTL 110

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           F   + +  GL + + G                  P  ++                E SS
Sbjct: 111 FTAHLLRAHGLRAREGGNV---------------DPPLVS------VVDEAEVAVAELSS 149

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+  R+   +       NLG DH+D H T +AY  AK+ L + L P+++      D  
Sbjct: 150 FQLE--RVHAFRPRVAVLLNLGVDHLDRHGTVEAYHAAKLNLLKNLTPEDALVYNRLD-- 205

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              +V + A  +  R+      G       + A     +  + + G+             
Sbjct: 206 --PKVRRAAEASPARLYPF-TPGSTPRETNLRAALEATRAYLDLLGRP------------ 250

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT--SNSL 369
                          +D   V E L  L   P RF+      +GG +++D +    + ++
Sbjct: 251 ---------------LDPGAVAEALRTLPEAPHRFQAFA--RKGGVVFIDDSIATRTEAV 293

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L+           + +  GG+        +  +   +     +  D PR     + R
Sbjct: 294 RAALEAAPA------PIAWILGGEDKGADLAPLLPLLGRVRVALALGRDGPRFARALEGR 347

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            E++           R  A+  A+  L +  VL+
Sbjct: 348 TEVVVIAEKDGRTAMRK-AVEEALSRLEQGSVLL 380


>gi|290969170|ref|ZP_06560695.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780676|gb|EFD93279.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 454

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 98/268 (36%), Gaps = 23/268 (8%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +  +     N+  DH+D H T +AY  AK R+F      ++  + Y DD     
Sbjct: 172 LELTSSLHAVGAVILNITPDHLDRHHTMEAYSAAKERIFSNQEATDTAVLNYDDD----R 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQ 311
           V         +V+    QG+          +   Q+ +  +G D     D    L G   
Sbjct: 228 VRNMQARRKGKVVFFSTQGEVPEGT----FYKDHQLMLRHDGTDTLICRDSDLQLFGAHN 283

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A  L  A+ I   ++   L++   V  R E V      G  Y + +  +N ++ 
Sbjct: 284 IQNCLAAVLLATAVAIPLPVIRSVLKRFRGVEHRLEKVRVLQ--GVPYYNDSKGTN-VDA 340

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +K +    SG +I++   G D+       M   A  +  + +V +   R     K    
Sbjct: 341 SIKALEAF-SGHLILI-AGGHDKMTPLDAFMKLAARKVDTLILVGESADRFAAAAK---- 394

Query: 432 IIHGIPGFIEKG-NRIEAIRTAIEMLNK 458
              G+      G N  +A+ TA ++   
Sbjct: 395 -KAGVRDIRNVGYNMEKAVMTARKLARP 421


>gi|225375617|ref|ZP_03752838.1| hypothetical protein ROSEINA2194_01242 [Roseburia inulinivorans DSM
           16841]
 gi|225212596|gb|EEG94950.1| hypothetical protein ROSEINA2194_01242 [Roseburia inulinivorans DSM
           16841]
          Length = 467

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 18/283 (6%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T    E SS  L+            +  N+  DH++ H T + Y   K  + +       
Sbjct: 173 TVTVAEISSFQLE--TTHEYAPEVTAILNITPDHLNRHHTMECYIETKESITKNQT-AGD 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  +D   +   +          S     K ++L      +        V   +   
Sbjct: 230 TCVLNYEDEVLRRFGETLQTKVVFFSSKRKLEKGLYLDGEDIFYADGTTDTKVINVN--- 286

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+    N + A G+ ++ G+    ++E L++   V  R E+V T  RG + Y D 
Sbjct: 287 ELNILGKHNYENVMAAVGMSVSFGVPMDKIVEVLKRFQAVEHRIEYV-TEKRGVKFYNDS 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             T+   +  ++ IR +    +++  G G D+       +      +  + ++       
Sbjct: 346 KGTNP--DAAIQGIRAMNRPTLLI--GGGYDKQSEYDEWIESFDGKVKKLVLI------G 395

Query: 423 EDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  EKI      HG    I      EAI T        D +++
Sbjct: 396 QTKEKIAECAKKHGFEDVILCDTFEEAIDTCYANAVSGDAVLL 438


>gi|225568660|ref|ZP_03777685.1| hypothetical protein CLOHYLEM_04738 [Clostridium hylemonae DSM
           15053]
 gi|225162588|gb|EEG75207.1| hypothetical protein CLOHYLEM_04738 [Clostridium hylemonae DSM
           15053]
          Length = 449

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 108/289 (37%), Gaps = 21/289 (7%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +S   V     E SS  L+   +   +    +  N+  DH++ H T +AY  AK  +   
Sbjct: 154 MSEHAVAVA--EMSSFQLES--IVSFRPAVSALLNITPDHLNRHHTMEAYIEAKKNI-AR 208

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +E   I+  +D  ++E  K          S     + I+L     I+   +  I + 
Sbjct: 209 NQTEEDWCILNYEDEVTREFGKNVRAQVLYFSSRRKLERGIYLDDGRIIYRNPE-EICIC 267

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D      LPG     N + AA +    G+    + E ++    V  R EFV    + G
Sbjct: 268 HVD---ELQLPGTHNHENIMAAAAMAAVYGVPVDKIRESVKAFKGVEHRIEFVTE--KNG 322

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +Y + +  +N  +  +K I+ +      V+ G G D+D      +      +  + ++ 
Sbjct: 323 VVYYNDSKGTNP-DAAIKGIQAMNRKT--VLIGGGYDKDSSYTEWIESFDGKVRKLILL- 378

Query: 417 DDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    EKI  +    G   ++      EA+  + E+    + +++
Sbjct: 379 -----GATKEKIAKDAESCGFHDYVFADTFEEAVLMSAEIAGPGEAVLL 422


>gi|56707593|ref|YP_169489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670064|ref|YP_666621.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456664|ref|ZP_03665137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370111|ref|ZP_04986117.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254874414|ref|ZP_05247124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|62900472|sp|Q5NHK3|MURD_FRATT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595657|sp|Q14J05|MURD_FRAT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|54113905|gb|AAV29586.1| NT02FT1066 [synthetic construct]
 gi|56604085|emb|CAG45084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320397|emb|CAL08467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568355|gb|EDN34009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254840413|gb|EET18849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158751|gb|ADA78142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 416

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 126/356 (35%), Gaps = 61/356 (17%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AVTG++GKS+V +    + +  G  S  +G   T                
Sbjct: 91  YIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGT---------------- 134

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
               AL+ +  +   +  VE SS  +  +  + ++   G   N+  DH+D +Q  + Y  
Sbjct: 135 ---PALNKIGEK-FDYCVVEVSSFQI--NLFNCVRFDLGCIINVSPDHLDRYQNFEQYKQ 188

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K+ L                        K +++     +  G +    +     AI+  
Sbjct: 189 SKLNL-----------------------AKFSNDFFVYDVHNGIKYAGEYQIIRGAIYRN 225

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               + +          L GE  + N +V   +   +G+D    ++ ++K   +  R + 
Sbjct: 226 STKLLDI------VETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGLEHRCKI 279

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V         Y++ +  +N +   +  + +IT+ + I++   G  +  G   +M K    
Sbjct: 280 V--KKVNSTTYINDSKGTN-VGATIAALNSITNSKNIILLLGGVAKG-GDFSLMIKSLDK 335

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +        D E I + I  G   +    N  +A   + +  N  +++++
Sbjct: 336 YVKYVYI-----YGADKEYIESYI-KGYCKYQLCNNMKQAFELSSQKANSNEIVLL 385


>gi|240143954|ref|ZP_04742555.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|257203987|gb|EEV02272.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|291539527|emb|CBL12638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis XB6B4]
          Length = 401

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 113/351 (32%), Gaps = 64/351 (18%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +  + ++ +TGT GKS+ ++ +  + +          P   + +  Q          
Sbjct: 81  FLQQFRDQVIGITGTKGKSTTSAMLYTVLKACSGR-----PVLLLGNIGQPCLDYFEEVT 135

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                         T +  E S H L       +      F NL  +H+DY+ T + YF 
Sbjct: 136 E------------DTIIVYEMSCHQLAH---TNVSPHIAIFLNLYEEHLDYYGTVEKYFE 180

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +                          A+        VG        + V  I  K
Sbjct: 181 AKSHI-------------------------AAYQKSGDYFFVG--------ENVPQIDTK 207

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q T+  + K   +   L GE   Y+A     +   +G +   VL+ +     +P R ++
Sbjct: 208 AQRTVLHQPKGVHYELKLAGEHNQYDAQFVERVAELLGCEKEAVLKSMADFEGLPHRLQY 267

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VGT  RG R Y D   T    E  +    +I   +   V   G DR      ++  I   
Sbjct: 268 VGT-YRGVRYYDDSISTIP--EAAINAAMSIPDAK--TVLIGGMDRGINYDLLVAFIREH 322

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                I           ++I  E+       +   +  +A+  A++M    
Sbjct: 323 KEFQFIC-----AYASGKRIFGEVGD-CENCVYAEDLEQAVEAAVQMTEPG 367


>gi|117924065|ref|YP_864682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
 gi|117607821|gb|ABK43276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
          Length = 454

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 144/395 (36%), Gaps = 53/395 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
             S       I +  P++  ++              +H E    + +TGT+GKS+V + V
Sbjct: 76  PRSHPAIQHAIAAGVPVI--NDIELLF---------RHSEQAAFVGITGTNGKSTVTTLV 124

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +  R        G T T  +              L  A   L    V    +E SS  
Sbjct: 125 GLMLARL------PGTTRTGGN--------------LGDAALSLWQADVERYVLELSSFQ 164

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L+   ++G      +  NL  DH+D +   Q Y  AK R+F+    ++  A+I ADD   
Sbjct: 165 LES--IEGFHPEVAALLNLSDDHLDRYNGLQGYLRAKARIFQRQTQRDR-AVINADDPAL 221

Query: 254 KEVMKRA-HNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + V     H +  RV+    Q      ++++    + ++Q    ++          + G 
Sbjct: 222 QPVRDILGHPSAPRVVPFSTQQVIKGGVYVQDGQLLDHRQMTQPAIPIMAI-AEMRIQGR 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NA  AA + +  G   A V + L     +P R  +V      G  Y++ +  +N +
Sbjct: 281 CNHANAAAAAAIALEAGASHADVRQVLRDFPGLPHRMAWV--RRMDGVTYINDSKGTN-V 337

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L+ I +   G   VV   GG   +     +  +        I+      +E+     
Sbjct: 338 GAVLEAIPSFPEG---VVLIAGGKAKKTDFSPLIPLLQKYVRHLILIG--TATEE----M 388

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A +   +       +  +A++ A ++    + +++
Sbjct: 389 AAMFQAVVPLQRATSMEDAVQIAQQVAQPGETVLL 423


>gi|146283990|ref|YP_001174143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Pseudomonas stutzeri A1501]
 gi|145572195|gb|ABP81301.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Pseudomonas stutzeri A1501]
          Length = 485

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 110/347 (31%), Gaps = 30/347 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A S  + +     N  +  V          A  +       +LA  GT GK++ +
Sbjct: 101 VVVGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAAAGTHGKTTTS 154

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     +      +     +P ++ +A  Y S+           
Sbjct: 155 SMLAWVLEHAGMSPGFL--IGGVPQNFGISARLGGTPFFVVEADEYDSAFFDKRSKFVHY 212

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I    +
Sbjct: 213 ------------RPRTAILNNLEFDHADIFPDLAAIERQFHHLV-RTVPGEGLIIHPESE 259

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
              K V+         V + G  G++   +      +  +  +  +G+      + L G 
Sbjct: 260 TALKRVIGM--GCWTPVQTTGDGGQW---QAKLLSADGSRFEVIFDGEVQGVVEWELTGR 314

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L +   V  R E V     G  IY D+AH   ++
Sbjct: 315 HNVNNALATLAAARHVGVLPKQGTEALSEFRSVKRRMEKV-AEVNGVTIYDDFAHHPTAI 373

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAI 414
              L  +R       I+                  +A  +  AD AI
Sbjct: 374 ATTLDGLRKRVGDTPIIAVIEPRSNSMKLGAHREGLAESVVLADQAI 420


>gi|325847851|ref|ZP_08170073.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480869|gb|EGC83922.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 436

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 120/338 (35%), Gaps = 46/338 (13%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +  ++G ++  +G                         L  + ++       E S
Sbjct: 112 SLITYVLNQAGKNAISVGNIG-------------------EGILWQMYNKDA-VFVEEVS 151

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L  H     K   G+  N+  DHID+H + + Y N K++L +    K+   +I  DD
Sbjct: 152 SFQL--HNTKTFKPHIGAILNISPDHIDWHGSFENYANDKLKLAKNQ-DKDDFLVINHDD 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
              K + K  +    ++     + K    I+LK        ++    +  KD   +    
Sbjct: 209 ---KILSKNKNKFKAKIYEFSMKEKVERGIYLKDDSLYLKDEKDIFLLNKKDLKIV---- 261

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NA  A       GID   V+++ +    +  R EFV    +    Y D   T+ 
Sbjct: 262 GNHNLANAACAMLCLYLYGIDLEKVIKYTKTFKAIEHRLEFVK-KVKNVPFYNDSKATN- 319

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            ++  +K I +      I++   G D+     P+  K    +  + ++          + 
Sbjct: 320 -VDSTIKAIDSFDKN--IILLAGGYDKKIDYSPMFEKENGKIKAMILLGQ-------TKY 369

Query: 428 IRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   +       +    N   A+  + E++   D +++
Sbjct: 370 ILENLCKKYKVKYFLVDNMQMAVDKSFEIMEDSDTVLL 407


>gi|299533097|ref|ZP_07046482.1| UDP-N-acetylmuramate [Comamonas testosteroni S44]
 gi|298718874|gb|EFI59846.1| UDP-N-acetylmuramate [Comamonas testosteroni S44]
          Length = 472

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 120/385 (31%), Gaps = 46/385 (11%)

Query: 103 SLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--------GPTSTI 153
              A   L G+H   +LAV GT GK++  S +  + + +GL    +        G ++ +
Sbjct: 101 QWLAEHVLRGRH---VLAVAGTHGKTTTTSMLTWVLECAGLQPGFLVGGVPLDFGVSARL 157

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTN 211
            +  +      P           +  + V  +  +         R   +  +       N
Sbjct: 158 GAAQRPAAGPGP-----------VGDEPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNN 206

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L  DH D      A       L    +P     +    +     V+  A      V S G
Sbjct: 207 LEFDHADIFDDLAAIERQFHHLI-RTVPSTGRVVSNGLEESLTRVL--AQGCWSEVRSFG 263

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                  +    A  +     +   GK      + L G     NAL A      +G+ + 
Sbjct: 264 -----SAVSDFSADGDPSDFAVLHRGKKVAQLRWSLTGVHNQLNALAAIAAADHLGVSAE 318

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVF 388
           +  E L +   V  R E  GT   G  +Y D+AH   ++   L  +R       RI+ VF
Sbjct: 319 VACESLSRFQNVKRRMELRGT-VNGIEVYDDFAHHPTAIRTTLDGLRRKLGAEARILAVF 377

Query: 389 GCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
                    G        +L+ AD+      +    D +     +     G  ++     
Sbjct: 378 EPRSNTMKLGTMKSQLPWSLESADLVFC---HTAGLDWDA-AEALESMGVGPGQRAQVAG 433

Query: 448 AIRTAIEM----LNKQDVLVVAGKG 468
            I T I      +   D +V    G
Sbjct: 434 DIETLIAQISAVVRPGDHIVCMSNG 458


>gi|256751766|ref|ZP_05492639.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749294|gb|EEU62325.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 427

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 137/412 (33%), Gaps = 67/412 (16%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152
           +N RK L         +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRKLLDYMG---NPQKSLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 153 -----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-- 205
                I+              Y+   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 206 --------------------AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
                                   T +  DH D    T       K  + ++    +   
Sbjct: 140 VLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQ----KGVV 195

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + +     + +V+  A       L+V  +        V          I    K  D   
Sbjct: 196 VSFYQQPEAMKVIIEACEVRNAYLTVLEKS------NVIIKEQNPDFQIFDYKKYKDLKI 249

Query: 305 PLPGEFQVYNALVAAGLCIAI-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            L GE Q+YNA +A      +      +    + E L +     GR E +    +   + 
Sbjct: 250 TLLGEHQIYNAALAVESVEKLRMYGYEVTEKDIKEGLYRAKWP-GRLEVM---RKKPYVV 305

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD- 418
           +D AH    + ++ ++++     ++I+V G   D+D  K      I +  AD+ I T   
Sbjct: 306 IDGAHNPQGMTVLKESLKLFKYDKLILVIGMLKDKDTQKML---DIIVPEADMIITTTPI 362

Query: 419 ----NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  SE  +KI  E        I   N  +A++ A+++  ++D+++  G
Sbjct: 363 SERAYKASELAQKIDKE------NVIPIENIEKAVKYALDIAKEEDMVLFCG 408


>gi|222152567|ref|YP_002561742.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus uberis 0140J]
 gi|222113378|emb|CAR41017.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus uberis 0140J]
          Length = 444

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 102/344 (29%), Gaps = 49/344 (14%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              + ++ +  I ++ P        +FL  F  +           V G  GK+S    + 
Sbjct: 73  RKDNNEELAYAIDNHIPF---KRYHEFLGDFMKQFI------SFGVAGAHGKTSTTGLLS 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + +    +SF IG  +   S      +                         E   H +
Sbjct: 124 HVLKNITDTSFLIGDGTGRGSANAQYFVFESD---------------------EYERHFM 162

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             H            TN+  DH DY       F+A     +++   +    +Y +D   K
Sbjct: 163 PYH------PEYSIITNIDFDHPDYFTGIDDVFSAFNDYAKQV---KKALFVYGEDEELK 213

Query: 255 EVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQV 312
           ++   A      +   G++         +    N     +   +     F  P  G+  +
Sbjct: 214 KISANAP-----IYYYGFEDYNDFVAYDITRTTNGSDFKVKHKDNVIGSFHVPAYGKHNI 268

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA          GID  LV +H+     V  RF     N     I  D+AH    +   
Sbjct: 269 LNATAVIANLYIAGIDMDLVAKHMLTFSGVKRRFTEKIINE--TIIIDDFAHHPTEIVAT 326

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   R    S  I+ +F                 AL+ AD   +
Sbjct: 327 IDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQALNEADSVYL 370


>gi|330994425|ref|ZP_08318350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconacetobacter
           sp. SXCC-1]
 gi|329758425|gb|EGG74944.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconacetobacter
           sp. SXCC-1]
          Length = 450

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 120/376 (31%), Gaps = 46/376 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                  A +     + +V +         +            +TGT+GKS+    +  +
Sbjct: 65  LPSPHPLARMAVEAGVPIVSDAELLFRAVRAAGSR---ARFAGITGTNGKSTTTVLLAHM 121

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G+     G    +   A    L     +Y+ +  SY+                   
Sbjct: 122 LACCGIPVAAGG---NLGPAALALPLLPDDGVYVLEMSSYMLE----------------- 161

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL+ +   A    NL  DH+D H     Y  AK+ +F+        A++ A       +
Sbjct: 162 -RLEQLHFSAACLLNLTPDHLDRHGDMAGYTAAKLHVFDHQ-HAGDLAVLGATLPDYARI 219

Query: 257 MKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +       R+  V      +  +     A+ +   V   ++G        LPG     N
Sbjct: 220 HRGLAATRVRIACVSGADVEQCDYYCTDHALCDHSGVIAGLDG-----ATDLPGTHNREN 274

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  A  + + +G+  A V   L     +  R + VG    G   +++ +  +N+ +   +
Sbjct: 275 AAAATAMALHLGMPRAAVEGALATFSALDHRQKLVG--RIGTVRFINDSKATNA-DATAR 331

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-------RSEDPEK 427
            +         +V+  GG    G    +  +   +A   ++  D P       R   P +
Sbjct: 332 ALACHDR----LVWIAGGTAKAGGIEELAPLFGHVALALLIGRDAPVLAATLTRHGVPHR 387

Query: 428 IRAEIIHGIPGFIEKG 443
           I   +   +P   E  
Sbjct: 388 IVHTLERAVPEAREAA 403


>gi|309806679|ref|ZP_07700675.1| Mur ligase family, glutamate ligase domain protein [Lactobacillus
           iners LactinV 03V1-b]
 gi|308166984|gb|EFO69167.1| Mur ligase family, glutamate ligase domain protein [Lactobacillus
           iners LactinV 03V1-b]
          Length = 268

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 83/274 (30%), Gaps = 23/274 (8%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH DY + +  Y +A     E+    +    ++ DD    ++            +
Sbjct: 2   TNVDFDHPDYFKDRDDYASAFQTAAEQ---TKKGLFVWGDDTRLNDI-----QVSIPKYT 53

Query: 270 VGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G+          +          +     +   F   L G+  + N      +      
Sbjct: 54  YGFNNTDDFQAYDIQKNITGSTFKVKYHDIELGQFEIHLFGDHNILNTTAVIAVAYIEKE 113

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIV 386
              LV   L        RF     +     I  DYAH    ++  L+  R    +  ++ 
Sbjct: 114 SLDLVRAALLTYKGAKRRFS--EKSYGKINIIDDYAHHPTEMKATLQAARQKYPNKILVA 171

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIPGFIEKG- 443
           +F         +        L  AD A VT       E+   I   ++   IP       
Sbjct: 172 IFQPHTYSRTAEFADQFVEILKTADYAYVTPIFGSARENHGNISSQDLTKRIPNSEVISL 231

Query: 444 NRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476
           + I       ++   +D ++V  G G  T + V 
Sbjct: 232 DNIA------DLTKFKDAVLVFMGAGDITKYEVA 259


>gi|262166568|ref|ZP_06034305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM223]
 gi|262026284|gb|EEY44952.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM223]
          Length = 269

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 83/266 (31%), Gaps = 21/266 (7%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL  DH D     +A       L    +P     +    D    +V KR          
Sbjct: 2   NNLEFDHADIFDNLEAIKRQFHHLV-RTVPGNGRILAPKQDEALADVFKR--GCWSETEF 58

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G QG++   K         Q  + + G+      + L G+  V NAL+A      +G+ 
Sbjct: 59  SGEQGEWQAEKITAD---GSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVA 115

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             L  E L        R E  G    G  +Y D+AH   ++E+ L  +R     + I+  
Sbjct: 116 PELACEALGLFVNTKRRLELKG-EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAV 174

Query: 389 GCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK- 442
                     G        +L  AD   +         P  I     E+        +  
Sbjct: 175 LEPRSATMKLGVHKETLAASLHSADSVYLYQ-------PSNIPWSVEEVAKQCAQPAQVS 227

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
            N  E +    +     D ++V   G
Sbjct: 228 ANMDEFVAMIAKEAKAGDQILVMSNG 253


>gi|254796835|ref|YP_003081672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
 gi|254590075|gb|ACT69437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
          Length = 326

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 105/326 (32%), Gaps = 37/326 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L       ++    I   Q + +   ++ S D   +  G IFV       D H  I  A 
Sbjct: 3   LTADLIRSILKAELICEYQAKIDISRSKFSMDYEKVGKGEIFVTADAKNHDTHHLIETAY 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA AI+     +            PI+ VD+  + +   A+ L   +   ++ +TG+S
Sbjct: 63  LNGALAIITKKDTACPKVP------IPIIKVDDPLRAMEKLAAILIRNYQPIVIGITGSS 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+   + +  + +  G + +        + F            +L              
Sbjct: 117 GKTLTKNLIVTLLKNYGKTCYNEDGAGDFTGFTLGILNADFPCKFL-------------V 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-----QQAYFNAKMRLFEELLP 239
           + V+ +  G             G  T++      +H       +++    K ++F+    
Sbjct: 164 LEVDTTHSGNIDLFNQITLPKVGVITDIR-----FHPARSIDLRESTVREKAKIFQN--- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A++  D  Y++ +++ A      ++S G      +       H+     + +    
Sbjct: 216 -GCVAVLNFDTPYTELLLQEARKNKATIISFG---GNENCDVRLLSHSNNTAVVKIGRSQ 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAI 325
             +      +      L   G+  A+
Sbjct: 272 KTYKLSDHNQHLKCAVLATIGVMKAL 297


>gi|167040832|ref|YP_001663817.1| FolC bifunctional protein [Thermoanaerobacter sp. X514]
 gi|300914867|ref|ZP_07132183.1| FolC bifunctional protein [Thermoanaerobacter sp. X561]
 gi|307723899|ref|YP_003903650.1| FolC bifunctional protein [Thermoanaerobacter sp. X513]
 gi|166855072|gb|ABY93481.1| FolC bifunctional protein [Thermoanaerobacter sp. X514]
 gi|300889802|gb|EFK84948.1| FolC bifunctional protein [Thermoanaerobacter sp. X561]
 gi|307580960|gb|ADN54359.1| FolC bifunctional protein [Thermoanaerobacter sp. X513]
          Length = 429

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 139/409 (33%), Gaps = 61/409 (14%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152
           +N RK L         +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRKLLDYMG---NPQKSLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 153 -----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-- 205
                I+              Y+   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 206 --------------------AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
                                   T +  DH D    T       K  + ++    +   
Sbjct: 140 VLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQ----KGVV 195

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + +     + +V+  A       L+V  +        V          I    K  D   
Sbjct: 196 VSFYQQPEAMKVIIEACEVRNAYLTVLEKS------NVIIKEQNPDFQIFDYKKYKDLKI 249

Query: 305 PLPGEFQVYNALVAAGLCIAIG-----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            L GE Q+YNA +A      +      I    + E L +     GR E +    +   + 
Sbjct: 250 TLLGEHQIYNAALAIESVEKLKMYGYEITEKDIREGLYRAKWP-GRLEVM---RKKPYVV 305

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +D AH    + ++ ++++     ++I+V G   D+D  K      I +  A++ I T   
Sbjct: 306 IDGAHNPQGMTVLKESLKLFKYDKLILVIGMLKDKDTQKML---DIIVPEANMIITTT-- 360

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           P SE   K  +E+   I     I   N  EA++ A+++  ++D+++  G
Sbjct: 361 PISERAYK-ASELAERIEKEKVIAIENIEEAVKYALDIAKEEDMVLFCG 408


>gi|294648722|ref|ZP_06726182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825397|gb|EFF84140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 453

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 111/360 (30%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        +  +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFCVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    +    EV+++       V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETNIDEVLEQ--GCWTPVVRTSLEPNDQAALSAELISADGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   GK   +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGKVIGEVKWSMTGQHSVANALATIAAAQHVGVSIEQACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
              RG  +Y D+AH   ++E  L    + +   ++  +          G        +  
Sbjct: 324 -KVRGIEVYDDFAHHPTAIETTLDGARKRLGERKLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 383 LADEVI--WYQPEGLD-WDLQPVIAASSNKAEVSRSLDEIIARVVNEAGEGDAVVIMSNG 439


>gi|269967387|ref|ZP_06181447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           alginolyticus 40B]
 gi|269827975|gb|EEZ82249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           alginolyticus 40B]
          Length = 437

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 142/401 (35%), Gaps = 64/401 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L              VV +      LFA  +     + ++A+TG++GKS
Sbjct: 69  ADLIVTNPGIALATPEIQAVLAKGTAVVGDIE----LFAWAVQ----KPVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      + + +GL     G     +                      L  Q      +
Sbjct: 121 TVTDLTGVMAKAAGLDVGVGGNIGVPA--------------------LDLLEQDADLYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +  +KL A +F NL  DH+D +Q    Y  AK+R+F       + A++ 
Sbjct: 161 ELSSFQLE--TMSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFNH----AALAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFDFL 303
            DD       +   +A   +++ G   +    +    +   + + Q+V  S E       
Sbjct: 215 RDDQ------ETFPDAEMPLVTFGSDNQDFGFEVDGNRTWLLDHGQRVVASDE------- 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + NALVA  L  A  ++    L  L+    +  R + V  N +G +   D  
Sbjct: 262 LKLVGKHNLSNALVALALLKAADVNYHNALNALKNYTGLTHRCQVVADN-QGVKWVNDSK 320

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            T+ +  M   +    T    ++V G G   D    P+    A     +     D     
Sbjct: 321 ATNIASTMAALSGLESTGKLYLLVGGVGKGADFS--PLKPIFATLNLQLCCFGADG---- 374

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E +      I      + I+     L   D++++
Sbjct: 375 ------DEFMPLHESAIRFDTMEDVIQQVSSQLKPGDMVML 409


>gi|149927130|ref|ZP_01915387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Limnobacter
           sp. MED105]
 gi|149824069|gb|EDM83290.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Limnobacter
           sp. MED105]
          Length = 495

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 118/336 (35%), Gaps = 47/336 (13%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L  H    +K  A +  N+ +DH+D+H   Q Y   K R+F E      
Sbjct: 173 DIWVLELSSFQL--HWTKRLKFDASTVLNITQDHLDWHPDMQEYAQDKFRIFSE----NG 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--------------IHLKKVCAIHNK 288
             +I  DDA    V+     AG RV + G                      + V      
Sbjct: 227 VCVINRDDAL---VLDANLPAGTRVSTFGTSAPAQVDDFGLIREGGMLWLAQLVGDQEKS 283

Query: 289 QQVTISVEGKDFDFL------------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           Q+  IS   +  + +              + G     NAL A  LC  +G+  A +L  L
Sbjct: 284 QETPISTRRRKQEEVEPRQKLLMPIEALQVVGLHNASNALAALALCQGLGLPMAKLLHGL 343

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 P R + V      G  Y D +  +N +   +  +  +      V+   G  + Q
Sbjct: 344 RSYQGEPHRVQHVV--QIDGVDYFDDSKGTN-VGATVAALNGLAKPT--VLIAGGDGKGQ 398

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              P++  ++     + ++       +D + + + +        +     +A++ A    
Sbjct: 399 DFSPLVQPVSNYCKHVVLI------GKDADNMMSALALAQVPCEKAATLEQAVQVAASKA 452

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            + D ++++     ++ +  N   +  V  D +R I
Sbjct: 453 REGDCVLLS-PACASLDMFRNYVHRAEVFVDAVRAI 487


>gi|150025421|ref|YP_001296247.1| Mur ligase family protein [Flavobacterium psychrophilum JIP02/86]
 gi|149771962|emb|CAL43436.1| Mur ligase family protein [Flavobacterium psychrophilum JIP02/86]
          Length = 452

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 105/309 (33%), Gaps = 29/309 (9%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 +  + + G+ GK+++ S +  +     +    I     + +  +          
Sbjct: 97  YEQSKNKTRVVIGGSHGKTTITSMILHV-----MHYHNIAVDYMVGAQLEGFDTMVH--- 148

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L +   ++  +G  ++    SS    + +    +      + +  DHI+   T + Y  
Sbjct: 149 -LTEENDFMVLEGDEYL----SSPTDLRPKFHLYQPNIALISGIAWDHINVFPTYENYV- 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A+  +F + +      +   DD   K V + + N   R+                     
Sbjct: 203 AQFEIFIQKITNGGILVYNEDDLEVKRVAEASTNPIRRI-----------PYHTPNYSVN 251

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +T+ +E  + D    + G   + N   A  +C  +G+D A   E +        R E 
Sbjct: 252 DGITL-LETPEGDMPIEVFGAHNLNNLAGAKWICQNMGVDEADFYEAIASFKGASKRLEK 310

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP--IMGKIA 406
           +   S+    Y D+AH+ + +    K ++     R +V                   + A
Sbjct: 311 I-AESKTKVAYKDFAHSPSKVAATTKAVKEQYPNRNVVACLELHTYSSLNAEFLKEYEGA 369

Query: 407 LDLADIAIV 415
           L  AD+A+V
Sbjct: 370 LQYADVAVV 378


>gi|257465567|ref|ZP_05629938.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus minor 202]
 gi|257451227|gb|EEV25270.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus minor 202]
          Length = 454

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 89/264 (33%), Gaps = 12/264 (4%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NL  DH D     +A       L    +P +   +  ADD   ++ +K    +  + 
Sbjct: 184 IINNLEFDHADIFDDLKAIQRQFHHLV-RTMPSQGCILSAADDQNVQDTLKMGSYSELQF 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +    +GK    K + A  +  +V      K  +  + + G   ++NAL+A       G+
Sbjct: 243 IG---EGKAWFAKPLSADCSHFEV-YHHGNKAGEVKWNIIGSHNMHNALMAIAAAHHAGV 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIV 386
           + A   + L +      R E  G    G  +Y D+AH   ++   +  +R  +   + I+
Sbjct: 299 EVAGACQALNRFINANRRLEIKG-EVNGITVYDDFAHHPTAISATINALRGKVGKDQRIL 357

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIPGFIEKGN 444
                            +IA  L D   V    P +   +   I   +            
Sbjct: 358 AVLEPRSNTMKMGVHKEEIAPSLTDAEAVFVYQPETIPWNVSVITEALSQPAKWSANIDE 417

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
            +E I    E     D ++V   G
Sbjct: 418 LVEMIA---EEAKPTDHILVMSNG 438


>gi|297623693|ref|YP_003705127.1| FolC bifunctional protein [Truepera radiovictrix DSM 17093]
 gi|297164873|gb|ADI14584.1| FolC bifunctional protein [Truepera radiovictrix DSM 17093]
          Length = 433

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 127/391 (32%), Gaps = 41/391 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--------------- 147
           +L A+  + +     L V GT+GK SV S +  I   +G    +                
Sbjct: 33  ALLAALDHPEGAFESLLVGGTNGKGSVTSTLASILHAAGRPVGRFTSPHLTHFRERFTLA 92

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAK---------ALSYLSSQGVTHVSVEASSHGLDQHR 198
           G     +   +  +   P    L           AL   +  GVT   +E    G     
Sbjct: 93  GEPVGEAPLLRALKDVRPHAERLGATFFEITTAVALLLFARAGVTVAVMEVGL-GGRLDA 151

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            + +       T +  DH +    T       K      +L     A+  A       + 
Sbjct: 152 TNALSPRLSVITGVALDHTEVLGGTVAEIAIEKA----GILRPGRLALTGAAGEALAVIA 207

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           + A   G  +  +G++   I +           +T+           PL G  QV N  +
Sbjct: 208 REAARLGAPLWRLGHE---ISVTARDEGWRGSSLTVGTPAGALAVRTPLIGAHQVPNTAL 264

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A     A+ +  A ++  +     V           RG  + +D AH   +   +   + 
Sbjct: 265 AVAAARALEVPDAAIVRGVA---GVRWPGRLEPVPYRGRTVLLDGAHNPAAAAALAATLE 321

Query: 378 TITSGRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +     ++VFG   D+D  +  R + G +   +A  A +   +PRS  PE + A     
Sbjct: 322 RLGVAPALLVFGTSADKDAREMVRALAGSVRATIATRARL---SPRSSPPETLAALWRDA 378

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                       A+  A+E     + +VVAG
Sbjct: 379 ARPAQVAPTPEAALALALESSQPGETVVVAG 409


>gi|307265431|ref|ZP_07546987.1| domain of unknown function DUF1727 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919545|gb|EFN49763.1| domain of unknown function DUF1727 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 451

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 117/375 (31%), Gaps = 62/375 (16%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
             K+ S    +L G    N + +TGT+GK++ +  +  I   +G S       + + +  
Sbjct: 31  ALKYDSKLIEKLIGPIKNNKVLITGTNGKTTTSGLIASILTTAGKSVVHNKEGANMKTGI 90

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
               +   S  +L       +   V   ++           ++ +K      TN  RD +
Sbjct: 91  ATALIK--SSNFLGNLQKDATVFEVDEANMPIV--------IEDVKPNIVVITNFFRDQL 140

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------------------ 259
           D +         K++     LP++S  ++ AD+ ++  +                     
Sbjct: 141 DRYGELDTTVE-KVKKALLNLPQDSIVLLNADEPFTASIGDEIKSKVFYYGIEDNIEGIN 199

Query: 260 ------------AHNAGCRVLSVGYQGKFIH-------------LKKVCAIHNKQQVTIS 294
                       AH    + +  G  G +                  +    +     + 
Sbjct: 200 SSSFEQKYCPICAHKYEYKKIYYGQLGDYYCPNCGKKRPNPHFKATNIFLNEDGINFNLY 259

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + K F     L G + VYN L A    I + ID + +L+ +E    + GR +     S+
Sbjct: 260 YKDKIFTVKSRLIGLYNVYNLLAAISAGILLNIDFSTILKAIESYWPIEGRLQKTKIKSK 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-----ALDL 409
             R  ++        E  L  +        +++       D      +  +         
Sbjct: 320 --RTIINLIKNPIGFESTLNMLSQFNKPLNLLISINDNYADGRDVSWLWDVNLESFLSKT 377

Query: 410 ADIAIVTDDNPRSED 424
               IVT    R+ED
Sbjct: 378 KVNYIVTS-GLRAED 391


>gi|258508277|ref|YP_003171028.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus GG]
 gi|257148204|emb|CAR87177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           rhamnosus GG]
 gi|259649594|dbj|BAI41756.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus GG]
          Length = 459

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 99/304 (32%), Gaps = 19/304 (6%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    +   +S ++ +     ++ A         +  +       TN+   H+D+H
Sbjct: 139 PHHAFDAGNIGIPVSQVAQKAGKEDTIVAELSSFQLCGIKTLHPHIAVLTNIYEAHLDWH 198

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
             +  Y  AKMR+     P +   + +       E+ + A  +  +++    +       
Sbjct: 199 GNRANYVAAKMRITMNQTPDDYFIMNWD----LPEMHQLAKQSQAQIVPFSRKQAA---- 250

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              A      +T   +         +PG   + NAL A       G+    + E L    
Sbjct: 251 GARASLIDGWLTFDGDKIMPASDLQIPGLHNIENALAAIAAAKLKGVSDDAIREVLRTFS 310

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R +++ T   G R+Y D   T+  +E     +       +      G DR      
Sbjct: 311 GVKHRIQYLET-INGRRVYNDSKATN--VEAATVALNAFQQPIVW--LAGGLDRGLPMDA 365

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +   +  + +            KI  +   G+P   +  N + A+  A E     D
Sbjct: 366 LTPLVKKHVKSMVVFGQTASLM---AKIAKD--AGVP-VQKTENVMTAVPLAYEASRPGD 419

Query: 461 VLVV 464
           V+++
Sbjct: 420 VILL 423


>gi|183220592|ref|YP_001838588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910700|ref|YP_001962255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775376|gb|ABZ93677.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779014|gb|ABZ97312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 463

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 108/304 (35%), Gaps = 41/304 (13%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           LS  A      +   I+ +TGT GKS+  +    + Q+   ++   G             
Sbjct: 99  LSEIALARIF-YKGPIIGITGTDGKSTTTALTYHLLQKKYPNAKMGGNIGV--------- 148

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                        +    + + +V +E SS+ LD      +KL A +  NL  DH++ H+
Sbjct: 149 -----------PFTSFCLENLDYVVLELSSYQLDDS--PNLKLTASAILNLASDHLERHK 195

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T ++Y  AK ++ + L  K+    +                    + S+G    +     
Sbjct: 196 TMESYALAKWKI-QNLEDKDHQCFVN---PIFFSYTPFRKPNVSNLHSIGDNETYFVSLH 251

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              IH  +    +         FPL G+  + N   A  L    G+D   + + LE    
Sbjct: 252 PNLIHTPKHTYDAT-------RFPLTGKHNLMNLCFAIALAEVAGLDPEQIQKQLETFQG 304

Query: 342 VPGRFEFVGTNS-----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           +P RF+ +   +     +  R   D   T+  L  +L  I     G  + +   G  +++
Sbjct: 305 LPHRFQSIDPKNLSPQYQSIRFINDSKSTN--LHSMLSGISGFQKGDPMYLILGGIPKEE 362

Query: 397 GKRP 400
              P
Sbjct: 363 PIAP 366


>gi|148657882|ref|YP_001278087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus sp.
           RS-1]
 gi|166224765|sp|A5UZT4|MURD_ROSS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148569992|gb|ABQ92137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus sp.
           RS-1]
          Length = 466

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 91/283 (32%), Gaps = 13/283 (4%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+     G+       T +  DH+D H T +AY  AK +++    P ++ A +
Sbjct: 164 LELSSFALEGLGEAGLSPKIACITTIAPDHLDRHGTMEAYILAKEQIWRHQRPGDAVA-L 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFL-- 303
            AD    + +          V         +      A     + V     G        
Sbjct: 223 NADSPIIRAMAVVEQRPDDVVWFASAAHPALAHAGRAAFWQGDELVWRDHRGGRHVICTR 282

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   + N   A     + G+    +   ++    V  R E V     G R    
Sbjct: 283 DDVQLRGTHNLGNIAAATAAACSFGVAPDHIRRAVQTFPGVEHRLELV-RELDGVR---- 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y + + +           T    IV+   G D+      +  +IA  +  + +V  D   
Sbjct: 338 YVNDTAATAPEAAIAALRTFDDPIVLIAGGADKQLPFDDLAREIAGRVKAVVLV--DGTA 395

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   ++    +   +       +   A+  A  +    D++++
Sbjct: 396 TPKLQRALRLVDPSVDVCGPFDDFERAVIAARHIAAPGDIVLL 438


>gi|317495036|ref|ZP_07953408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella moribillum
           M424]
 gi|316914808|gb|EFV36282.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella moribillum
           M424]
          Length = 446

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 23/277 (8%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+       K      TNLG  H+DYH   + Y NAK +++      +   +I 
Sbjct: 162 EVSSFQLE--GTKYFKPSIAVITNLGEGHLDYHGNLENYQNAKKKIYVNQTKDD--FLII 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                 K    +  +      +       +++K+   +  + ++  S +         LP
Sbjct: 218 NIKEKEKYNFDKIKSTIIFYDTKENISTDVYIKENIVMFRETELFDSTK-------LKLP 270

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NA+ AA +    G  +  + + L     V  R ++VG   +G + Y D   T+ 
Sbjct: 271 GMHNVENAINAAIISYLKGASTDAIQQVLYNFSGVKHRLQYVG-EYKGVKYYNDSKATNP 329

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
                +     ++     ++  CGG         +      +  + +V       E  E 
Sbjct: 330 -----VATTTALSGFDKNIILICGGKDRGIDFKELIPYLSKIKVMVVV------GESKEL 378

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +  I      I+     +A + A  +    D +++
Sbjct: 379 LYSLAIQHNVKCIKAIKVADATKLASSLAKNGDTVLL 415


>gi|293391356|ref|ZP_06635690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951890|gb|EFE02009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 434

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 139/394 (35%), Gaps = 54/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +   F          +  + I+A+TG++GKS+V 
Sbjct: 68  IVISPGLAVKTPEIQTALQAGVEVLGDIELF--------CREADKPIVAITGSNGKSTVT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +GL     G                        ALS L+ Q      +E S
Sbjct: 120 TLVAEMAKAAGLRVGMGGNIG-------------------IPALSLLNQQ-YDLYVLELS 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K +A +  N+  DH++ +   Q Y +AK+ ++         A+I A+D
Sbjct: 160 SFQLE--TTYSLKAVAATVLNVTEDHMNRYMDLQDYRHAKLNIYNHC----QTAVINAED 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A    +   A     + +S G       LK     +NK  +    E         L G  
Sbjct: 214 A----LTLPATQRPQKQVSFGENHADYWLKT---ENNKTYLMAYDEAVLACDEMKLTGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A  L  A GI+   +   L     +  RF+ V   + G R   D   T+    
Sbjct: 267 NYMNALAAIALAQAAGINLTGIRTALCAFGGLEHRFQ-VAHIADGVRWINDSKATNVGST 325

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           +       +     +++ G G   D     +   I     +      D        K  A
Sbjct: 326 VAALTGLQVAGKLHLLLGGDGKGADFS--ELARLINQPHINCYCFGRD-------GKQLA 376

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +      F    + I AIR     L   D++++
Sbjct: 377 ALSSQSQLFDTMEHAIAAIR---PQLQAGDMVLL 407


>gi|251779958|ref|ZP_04822878.1| tetrahydrofolate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084273|gb|EES50163.1| tetrahydrofolate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 437

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 140/388 (36%), Gaps = 47/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
            ++ + GT+GK S  S +  I    G                   I+         T   
Sbjct: 42  KLIHIAGTNGKGSTTSMITSILIGMGYKVGMYTSPFLEEFEERIQINGENIPKNKLTELI 101

Query: 168 IYLAKALSYLSSQGVTH---------------------VSVEASSHGLDQHRLDGIKLIA 206
             + KA+  +  +G  H                      +V     G +    + I  I 
Sbjct: 102 NTVKKAVDKVIEEGYEHPTEFEILTTVMYLYYYNEKVDYAVIEVGLGGELDSTNVITPIV 161

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    +       K  + +E +P     +    +   + ++++A     
Sbjct: 162 SVITSISFDHMNILGNSLYEIAMQKAGIIKEEIP---VVVYPQTNEAMRAIIEKAKITNS 218

Query: 266 RVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG---- 320
           +V  +    G FI +K     +  Q+V I    + ++   PL GE Q+ N  VA      
Sbjct: 219 KVCEINSNSGTFIEVKHEEKFY--QKVKIDTGKELYNVNLPLMGEHQILNLSVALTTIEI 276

Query: 321 LCIAIGI--DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           LC   G+  +  L+   +E    V  R      N +   I +D AH  + ++M+  N++ 
Sbjct: 277 LCEREGLILNKELIENSIES---VKWRGRLEVLN-KEPLIVMDGAHNIDGIKMLKSNVKK 332

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                  V    G   D+    ++ +I      +  +T  + R+E   +++  I+     
Sbjct: 333 YF-KYNNVFLLLGILADKQVEEMIKEITPMAYKVYALTPHSDRAELNTELKDHILKYNKN 391

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            I   +  EA++T +     +D+++++G
Sbjct: 392 TIALDSYEEAMKTVLSEATSEDLILISG 419


>gi|237739354|ref|ZP_04569835.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
 gi|229422962|gb|EEO38009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
          Length = 432

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 137/387 (35%), Gaps = 54/387 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TGT+GKS+  + +  +   +G  +   G                     L++AL 
Sbjct: 92  KIIAITGTNGKSTTTAKISDLLNHAGYKACYAGNIG----------------RSLSEAL- 134

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  + +  VS+E SS  L+   ++  +       N+G DHI+ +++   Y++ K  + +
Sbjct: 135 -LHEKDLDFVSLELSSFQLEN--VENFRPYISMIINMGPDHIERYKSFDEYYDTKFNIAK 191

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +    I   DD    E+ KRA     + +SV    +     +   I+  +   I  
Sbjct: 192 NQ-NENQYFIENIDDV---EIEKRAKQIKAKRISVSKSKEANVYVEDNKIYVGKDFIIEA 247

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +         L G   + N L        + ID   + E L     +  R E      + 
Sbjct: 248 D------KLSLKGIHNLENTLFMVATAEILNIDREKLKEFLMVATPLEHRTELFFNYGKV 301

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I    A   +S          I + +  ++   G D+     P+   I  ++ ++ ++
Sbjct: 302 KFINDSKATNVDS------TKFAIQANKDSILICGGYDKGVDLAPLAEMIKENIKEVYLI 355

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAI-----EMLNKQDVLVVAGK 467
                       I  +I   +     + ++I   E I  ++           D +++   
Sbjct: 356 ----------GVIADKIETELKKVGYEASKIHKLETIENSLLDMKKRFTKDSDEVILLSP 405

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
              +     + E +  V  +++ +I G
Sbjct: 406 ATSSYDQFNSFEHRGKVFKELVLKIFG 432


>gi|323144064|ref|ZP_08078708.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Succinatimonas
           hippei YIT 12066]
 gi|322416177|gb|EFY06867.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Succinatimonas
           hippei YIT 12066]
          Length = 445

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 137/398 (34%), Gaps = 59/398 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS   S+         N  + +V +      LF   +       I+ +TG++GKS+V 
Sbjct: 71  LVVSPGLSISLPEIAAAGNAGVEIVGDVE----LFGREVTDVP---IIGITGSNGKSTVT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V  I +++G+ S        + +   +      S       L                
Sbjct: 124 ALVGYILEKAGIPSA-------VGANFGNAVFDIYSKRNRMYVLEL-------------- 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYAD 249
               +      + L AG   N+  DH+D +  +   Y +AK R+F          I+  D
Sbjct: 163 -SSFELETTSSLHLKAGVILNVSEDHLDRYEGSIDKYRDAKHRIFMHC----DNIIVNRD 217

Query: 250 DA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D          A + G   LS G +               +   ++V G+    +  L  
Sbjct: 218 DPRTFPANGHYAASFGLDDLSYGRE------------ETPETTYLTVNGRRVLDVKDLII 265

Query: 309 --EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                  NAL A  L  A+GID  + +E L+    +  R + +     G   Y D   T+
Sbjct: 266 CGRHNELNALAAMALADAVGIDRNVQIEALKTFPGLEHRCQLI-RELDGVSYYNDSKATN 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +              + I++   G  + Q   P+   +  +++ +          +D +
Sbjct: 325 VASAQAAIEGLCSRHPQGIILLAGGLGKGQDFTPLKRYLGKEVSAMFCF------GKDAD 378

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+ +         +   N  +A+ +A++M      +++
Sbjct: 379 KLLSLDEKYTHSVL---NLRQALNSAVQMARPGQAILL 413


>gi|261868564|ref|YP_003256486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413896|gb|ACX83267.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 457

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 86/274 (31%), Gaps = 22/274 (8%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+G DH D      A    +       +P     + +A +   ++ +     
Sbjct: 180 NPRILIINNIGFDHADIFDDLNAIQR-QFHHMIRTIPNNGRILSFAGEESVQQTLAMGCW 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           + C+ +     GK          H+  +  +  +G+   +  + + GE  + N L+A   
Sbjct: 239 SECQYV-----GKDQEWYAERIKHDCTEFAVYHKGEKITEVHWNIVGEHNMRNGLMAIAA 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G+        L        R E V  N  G  +Y D+AH    ++  L  +R    
Sbjct: 294 ANHAGVSIENACATLGSFINAKRRLE-VKGNVHGITVYDDFAHHPTEIQATLTALRDKVG 352

Query: 382 GR--IIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHG 435
               I+ V          G        AL LAD   +         PE I    A+I   
Sbjct: 353 QNARILAVLEPRSNTMKMGVHKDEIAPALKLADAVFLFQ-------PETIPWKVADIAAQ 405

Query: 436 IPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           +       + ++  +   +      D ++V   G
Sbjct: 406 LTQPAYDSDNLDTFVDLIVAETKPTDHILVMSNG 439


>gi|167037933|ref|YP_001665511.1| FolC bifunctional protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116348|ref|YP_004186507.1| FolC bifunctional protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856767|gb|ABY95175.1| FolC bifunctional protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929439|gb|ADV80124.1| FolC bifunctional protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 427

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 144/414 (34%), Gaps = 71/414 (17%)

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS---------- 143
           +N R+ LS       G   +N+  + V GT+GK S ++F+  I Q++G            
Sbjct: 23  ENIRRLLS-----YMGNPQKNLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLE 77

Query: 144 ------------------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVT 183
                              + +     I S         P+   +  A++  Y   + V 
Sbjct: 78  EFEERMRINGENISKEKLIYYVEYIKPIISKMVKEGYNHPTEFEVITAIAFKYFYDEKVD 137

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKES 242
            V +E    G           +    T +  DH D    T       K  + ++    + 
Sbjct: 138 FVVLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQ----KG 193

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             + +     + +V+  A       L+V  +        V          I    K  D 
Sbjct: 194 VVVSFYQQPEAMKVIIEACEVRNAYLTVLEKS------NVIIKEQNPDFQIFDYKKYKDL 247

Query: 303 LFPLPGEFQVYNALVAAGLCIAI-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              L GE Q+YNA +A      +      +    + E L +     GR E +    +   
Sbjct: 248 KITLLGEHQIYNAALAVESVEKLRMYGYEVTEKDIKEGLYRAKWP-GRLEVM---RKKPY 303

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +D AH    + ++ ++++     ++I+V G   D+D  K      I +  AD+ I T 
Sbjct: 304 VVIDGAHNPQGMTVLKESLKLFKYDKLILVIGMLKDKDTQKML---DIIVPEADMIITTT 360

Query: 418 D-----NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    SE  +KI  E        I   N  +A++ A+++  ++D+++  G
Sbjct: 361 PISERAYKASELAQKIDKE------NVIPIENIEKAVKYALDIAKEEDMVLFCG 408


>gi|330887111|gb|EGH20321.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas syringae pv. mori str. 301020]
          Length = 412

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 131/410 (31%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LA  GT GK++ +
Sbjct: 28  VVIGNALSRGNPAVEYVLNKGLPYVSGP----QWLADHVLQD--RWVLAGAGTHGKTTTS 81

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 82  SMLAWVLEHAGMSPGFL-----IGGIPQNFAVS-----------ARLGDTPFFVVEADEY 125

Query: 191 SHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +  +       NL  DH D      A       L    +P E   I   
Sbjct: 126 DSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPT 184

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +     V++        V + G  G++   +      +  +  +  EG+      + + 
Sbjct: 185 TEPALSRVIEM--GCWTPVQTTGEGGQW---QARLLSEDGSRFEVLFEGQLQGCVEWDMT 239

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  +L ++ L     V  R E V    RG  IY D+AH   
Sbjct: 240 GQNNVANALATLAAARPVGVVPSLGVQALSAFKSVKRRMEKV-AEVRGITIYDDFAHHPT 298

Query: 368 SLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAI------VTDDN 419
           ++   L  +R  I    II V     +  + G        ++  AD  +      +  D 
Sbjct: 299 AIATTLDGLRKKIGDAPIIAVIEPRSNSMKLGAHRDGLPESVSQADQVVWYAPPNLGWD- 357

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     A  + G        + +EA I            +V+   G
Sbjct: 358 ---------LAATVAGGSVPSTVCDSLEAIIARVHSQAQPGTHIVIMSNG 398


>gi|293603442|ref|ZP_06685867.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
           piechaudii ATCC 43553]
 gi|292818144|gb|EFF77200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
           piechaudii ATCC 43553]
          Length = 510

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 133/392 (33%), Gaps = 61/392 (15%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A     +    +L VTGT+GK++V +  + +   SGLS    G           
Sbjct: 118 RALADLAETQEYRP--RLLTVTGTNGKTTVTALTRDLIDASGLSVVAAGNI--------- 166

Query: 160 NRLTTPSPIYLAKALSYLSSQGV-THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                 SP  L   +  L +  +     +E SS  L+  R   +   A    N+ +DH+D
Sbjct: 167 ------SPAALTALMDALDNDALPQVWVLELSSFQLETTR--SLMADAAVVLNVTQDHLD 218

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--------- 269
           +H    AY  AK R+    L     AI+  DD  +  ++        R            
Sbjct: 219 WHGGMDAYAAAKARI----LTMARIAIVNRDDPLTIAMVPTVSALNVRSFGRDMPELVGD 274

Query: 270 -------------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQV 312
                              F                +   G+    +      + G    
Sbjct: 275 MGLELGQGVAWLVASEPSDFDEPAPPTRRKKDAPEPVRANGRMSRLMPVDALRIRGIHNA 334

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  L   + +    +L  L +    P R  FV     GG  Y++ +  +N +   
Sbjct: 335 LNALAALQLARCLDLGWGAMLRTLREYAGEPHRAAFV--RQIGGVDYINDSKGTN-VGAT 391

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +  +  G+ +V+   G  + Q   P++  ++     + ++  D P      +I   +
Sbjct: 392 VAALEGL--GQPVVLIAGGQGKGQDFSPLIPVVSRHARAVMLIGVDGP------EIGRVL 443

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  I   +   A+R A E+    D +++
Sbjct: 444 ASTGVNCITVDSLHAAVRGAAELAQPGDAVLL 475


>gi|302877302|ref|YP_003845866.1| UDP-N-acetylmuramate [Gallionella capsiferriformans ES-2]
 gi|302580091|gb|ADL54102.1| UDP-N-acetylmuramate [Gallionella capsiferriformans ES-2]
          Length = 446

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 113/356 (31%), Gaps = 32/356 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +L V GT GK++ AS +  I + +GL+   +     +      +   T SP ++ +A 
Sbjct: 107 RWVLGVAGTHGKTTTASMLAWILEHAGLNPGFL--IGGVPQNFDISARITESPFFVIEAD 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++                               NL  DH D      A    +    
Sbjct: 165 EYDTAFFDKRSKFVHYH------------PRTAILNNLEFDHADIFADLFAI-ETQFHHL 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +    +A  + V++R       V + G    +        I    QVT++
Sbjct: 212 VRTVPGNGLVVSNGREAALQRVIER--GCWTPVEAFGGDTGWN-------IDTGNQVTLN 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +  + L GE    NAL A       G+  AL L  L +   V  R E  G    
Sbjct: 263 -GVAQGELKWELLGEHNRMNALAALAAARHAGVPVALGLAALSEFKNVKRRMEVKGI-VN 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADI 412
           G  +Y D+AH   +++  +  +R       I+              +   +  +L  AD 
Sbjct: 321 GITVYDDFAHHPTAIDTTVAGLRHKVGAARILAVLEPRSNTMKLGVMKDALPGSLKDADQ 380

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 N   +     ++ +       +   +    I    +     D ++V   G
Sbjct: 381 VFCYSGNLGWDA----KSALAVMGDKAVVIDDLDTLIDVIAKSAMPGDHILVMSNG 432


>gi|307824829|ref|ZP_07655052.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
 gi|307734187|gb|EFO05041.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
          Length = 479

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 123/350 (35%), Gaps = 44/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A++G++GKS+V + + ++ + +G+     G   T +                    
Sbjct: 133 APIVAISGSNGKSTVTTMLGEMAKATGMKVGVGGNLGTPA-------------------- 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L +       +E SS  L+  R   +  +A +  N+  DH+D H     Y   K R+F
Sbjct: 173 LDLLALNAQLYVLELSSFQLE--RTSALNAVAATVLNVSADHLDRHVDMAEYAREKQRVF 230

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                 +   +I ADD     +  R         S+  +  F    K    +        
Sbjct: 231 RG----DGVMVINADDPVVYAM--RDDGRKVFTFSINKKADFYLGYKDDTEYLMHDEACL 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   +     PL G     NAL A  L +A+G+D  ++ + L     +  R + V    R
Sbjct: 285 MPLAE----LPLEGRHNAANALAALALGVAVGLDEQIMCDALRIFKGLSHRMQRV-AEIR 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G     D   T+  +   +  ++       +++   G  +      +   I      + +
Sbjct: 340 GVTWVNDSKATN--IGACVAALQGYARK--VILIAGGDAKGADMNELTPAIKEKAKSVVL 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  D         +  + ++G        N  +A+  A  + +  + +++
Sbjct: 396 MGKD-------AGLIKQALNGCVPVYSADNMAQAVEIAAGLADVGESVLL 438


>gi|313887870|ref|ZP_07821549.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846036|gb|EFR33418.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 425

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 131/382 (34%), Gaps = 44/382 (11%)

Query: 116 NILAVTGTSGKSSVASFV--------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            I+ +TGT+GK SVASF+          + + +      I     ++             
Sbjct: 40  KIIHITGTNGKGSVASFITGALIENNYSVGKFTSPYITNIREEIEVNREVISEEDFAKLA 99

Query: 168 IYLAKALSYLSSQGVTHVSVE-----------------ASSHGLDQHRLDG---IKLIAG 207
             + K +  L  + +     E                 A        R+D    +K    
Sbjct: 100 SEVRKEVEELDKKEIFVSGFEILTSIAYIYFARENLDFAVMEVGMGGRVDATNVMKKSIP 159

Query: 208 SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            F ++  DH +    + +     K  + +E     S          ++E  +        
Sbjct: 160 VFCHIALDHANILGDSLEKIAREKGGIIKENSHVFSY-------PQAEEAKEELKKISKE 212

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S     +F  ++ + +     +          D    L G+ Q YNA +A  +   + 
Sbjct: 213 KSSSFSDFEFDEVEIISSNEYGNKFNFRTY---KDVEISLIGDHQAYNAALALMVLEYLR 269

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D  L  + +++              SR   I VD +H  +S+E I K+++  T  ++I+
Sbjct: 270 KDYKLGPDKIKEGLKRAENIGRTECLSRDPLIVVDGSHNLDSIEGIEKSVKKFTYNKLIL 329

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH-GIPGFIEKGN 444
            F    D+D        +    LAD  ++T+ D+ R  D + +  E             +
Sbjct: 330 GFSLLKDKDHKHILEKIE---RLADKIVLTEIDSDRFTDIDLLEKEFKKISNKEIFAIKD 386

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
           R EA+   +E+  + D+++  G
Sbjct: 387 RKEAVEKTLELAGEGDMILWCG 408


>gi|188587819|ref|YP_001919625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum E3 str. Alaska E43]
 gi|226711898|sp|B2UXV7|MURD_CLOBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|188498100|gb|ACD51236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 458

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 126/361 (34%), Gaps = 61/361 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I  +TG+ GK++  + + +I Q  G  ++  G   T                 L   +
Sbjct: 117 AKIYGITGSDGKTTTTTIISKILQEEGYKTWVGGNIGTP----------------LFAQI 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + ++    V +E SS  L       + +     TNL  +H+D H+  Q Y +AK  +F
Sbjct: 161 EEIKAE--DRVVLELSSFQLMTM---NLPMDIAVCTNLAPNHLDMHKDMQEYIDAKKNIF 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------KFIHLKKVCAIHN 287
                  +   +  ++                 ++ G++        +F   ++V     
Sbjct: 216 LYQGSTNTLV-VNRENE----------------ITYGFEAEAKGEVREFSSKREVKEGAY 258

Query: 288 KQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +   + + GK+      +  +    V N L A  +     +    + +  E  + V  R
Sbjct: 259 YKDGILYLSGKEVCKKDNIVIKGMHNVENYLAAF-IATKDDVSIENMKKVAESFNGVEHR 317

Query: 346 FEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E V     G + Y D  A + N     LK          +++   G D+     P+  +
Sbjct: 318 CELV-REINGVKYYNDSIASSPNRTLAGLKAFDK-----KVILIAGGYDKHLLFEPLANE 371

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIP-GFIEKGNRIEAIRTAIEMLNKQDV 461
               + ++ ++       E  + +  ++    GI     E     EA++ A ++  + D+
Sbjct: 372 GYPYIKELILLGQTK---EKIKDVFKDLEASKGIKINISEVSTLEEAVKKAQDLAKQGDI 428

Query: 462 L 462
           +
Sbjct: 429 I 429


>gi|209963948|ref|YP_002296863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodospirillum centenum SW]
 gi|209957414|gb|ACI98050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodospirillum
           centenum SW]
          Length = 466

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 94/307 (30%), Gaps = 44/307 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVTG 122
           G  A+V+S        +       P  V    R      +         +     L +TG
Sbjct: 65  GVTALVLSPGIPHTFPA-------PHPVAARVRAAGIPVIGDVELLRRARPEATYLGITG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  +    I   +G      G   T                     L++      
Sbjct: 118 TNGKSTTTALTGHILAAAGRRLQVGGNLGT-------------------PVLTFEPLDAG 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE---ELLP 239
               +E SS+ L+      +   A +  N+  DH+D H     Y  AK   F       P
Sbjct: 159 DVYVLEMSSYQLEL--TPSLGFDAAALLNITPDHLDRHGGMDGYVAAKRLAFRPAPSPRP 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTIS 294
               A+I  DDA+   +        G RV+ +  +    G       V    ++ +    
Sbjct: 217 ALPVAVIGVDDAHCSAMADALEAEGGRRVVRISAERAVAGGVSAPDGVLVDDSEGRAVAV 276

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   D      LPG     NA  A  L  A G+    +   +     +  R + V T   
Sbjct: 277 L---DLRGCPSLPGRHNWQNACAAYALARAAGVAPEAIASAIRSFAGLAHRQQAVAT-ID 332

Query: 355 GGRIYVD 361
           G R   D
Sbjct: 333 GVRFVND 339


>gi|33151489|ref|NP_872842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           ducreyi 35000HP]
 gi|60390541|sp|Q7VP56|MURD_HAEDU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33147709|gb|AAP95231.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           ducreyi 35000HP]
          Length = 435

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 139/394 (35%), Gaps = 57/394 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +L            I VV +   F+              I+A+TG++GKS+V 
Sbjct: 71  IVMSPGLALATPEIQTAIQAGIEVVGDIELFVREA--------KAPIIAITGSNGKSTVT 122

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ Q++G+     G                        ALS L ++G     +E S
Sbjct: 123 TLVSEMAQQAGIKVGMGGNIG-------------------IPALSLL-NKGYELFVLELS 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+ +DH+D + + + Y  AK+R++E         I+  DD
Sbjct: 163 SFQLE--TTYSLKAKAATILNVSQDHMDRYASGEHYRQAKLRIYEN----AEYVIVNDDD 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +  +  ++            +    +  K   + +  Q  I+ +         L G  
Sbjct: 217 PLTYPLPSQSVGNLRHF----AEHDAQYAIKYDQLCSGDQAVINTD------QMLLTGRH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A  L  A GI+   ++  L     +  RF+ V TN     +    A    S  
Sbjct: 267 NQLNALAAIALAEAAGINRTGIINGLRCYGGLAHRFQRVPTNDGVCWVNDSKATNVGSTV 326

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +    SG + ++   G  +      +   +            D        K  A
Sbjct: 327 AALNGLPL--SGTLYLLL-GGDGKGADFSMLKALVNQPHIVCYCFGKD-------GKSLA 376

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E+       +      +AI     ++ + D++++
Sbjct: 377 ELT---TNSVLVDTMQQAIEQIRPLVKQGDMVLL 407


>gi|297181730|gb|ADI17911.1| folylpolyglutamate synthase [uncultured Desulfobacterales bacterium
           HF0200_07G10]
          Length = 443

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 130/400 (32%), Gaps = 49/400 (12%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF---------------- 145
             L       +     + + GT+GK S A+  + I + +G                    
Sbjct: 29  AQLLKHFGNPQLKVRTIHIAGTNGKGSTAAIAESILRSAGYKVGLYTSPHLLDFRERIQV 88

Query: 146 ---QIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               IG   T+       S+        T        A  Y   Q      +E    G  
Sbjct: 89  NRKMIGKQQTLELILRVRSAVENLKIPITFFEFGTVLAFLYFHEQNTDINVIEVGL-GGR 147

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +  K      T++  DH  Y     Q     K  +  E     +      ++   K
Sbjct: 148 LDATNLCKAEISIITSISLDHTQYLGDNLQQIAFEKASIINE---GGTVFAHIPEEEVFK 204

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVY 313
            V   A      +  +G +    H+        K   +     +   +   PL G FQ  
Sbjct: 205 VVNLLAKKCFADIHRLGLE---FHVAPETGNRKKNTFSYRWGSRSLNNLTLPLNGHFQRN 261

Query: 314 NALVAAGLCIAI-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           NA +A   C+A+      I+   + + LE +    GR E V  N     + +D AH  +S
Sbjct: 262 NAGLALSACLALNENGFNIEEEHLRQGLE-MVSWEGRLETVSFN---PTVVLDCAHNEDS 317

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPE 426
           ++ + K +R      R  +V G   D+       + KI   L D   +   N PR E  E
Sbjct: 318 VKNMTKELRENFKFSRCFIVLGLMQDK---NIDEIIKILSRLGDQFFLVSVNPPRGETSE 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           K+  ++          G   +A++    + N+ D++ + G
Sbjct: 375 KLAKKLKSHNKASQAFGTISDALQAVKHIANQDDLICITG 414


>gi|227822653|ref|YP_002826625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium
           fredii NGR234]
 gi|227341654|gb|ACP25872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sinorhizobium
           fredii NGR234]
          Length = 463

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 113/320 (35%), Gaps = 48/320 (15%)

Query: 60  IPQAIAQGAE-------------AIVVSSAYSL----QDFSATIRSNTPILVVDNTRKFL 102
           + +A+A G               A V+S    L      ++  +     + ++ +   F+
Sbjct: 45  VAKAMAAGIATADLRHVDWSAFSAFVLSPGVPLTHPKPHWTVDLAHQAGVEIIGDVELFV 104

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                R         +A+TGT+GKS+  + +  I + SG  +   G              
Sbjct: 105 RE---RRAHAPDCPFIAITGTNGKSTTTALIAHILKSSGRDTQLGGNIG----------- 150

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                      L+    +      VE SS+ +D      +   AG   NL  DH+D H T
Sbjct: 151 --------RAVLTLDPPKAGRFFVVECSSYQIDLA--PTLDPTAGILLNLTPDHLDRHGT 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLK 280
            Q Y + K RL          A++  DD++S  + +R   AG +V+ +  +         
Sbjct: 201 MQHYADIKERLVAG----SGTAVVGVDDSFSSLIAERVERAGTKVVRISRRHGLADGIYA 256

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +  ++   +  T  +   D   +  L G     NA  A   C+ +G+D   ++  L+   
Sbjct: 257 EGSSLMRAENGTAEL-FADLGGIQTLRGGHNAQNAAAAVAACLTVGVDRQDIVHGLKTFP 315

Query: 341 VVPGRFEFVGTNSRGGRIYV 360
            +  R + +        +  
Sbjct: 316 GLKHRMQPIAKRDDIVFVND 335


>gi|251798404|ref|YP_003013135.1| FolC bifunctional protein [Paenibacillus sp. JDR-2]
 gi|247546030|gb|ACT03049.1| FolC bifunctional protein [Paenibacillus sp. JDR-2]
          Length = 458

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 154/418 (36%), Gaps = 62/418 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI---GPTSTISSFAQD------------- 159
             + + GT+GK S  +++  +  + G           T   + F  +             
Sbjct: 54  KFIHIAGTNGKGSTCAYLTSVLMKCGYDVGTFTSPYITKFTNRFQYNGQDIDEETLLRLS 113

Query: 160 ------------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--QHRLDGIKLI 205
                           +P+   ++ AL+ L    VT+        GL       + +  I
Sbjct: 114 NVLKSHVEELAETEFGSPTMFEVSTALAILFYATVTYPDYVVWETGLGGRMDVTNIVTPI 173

Query: 206 AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               TN+G DH+D    T +A    K  + +  +P  S      D     EV+KR     
Sbjct: 174 ISVITNVGHDHMDRLGDTLEAVAFEKAGIIKAGVPVVSAV----DQPEVVEVVKRTAAE- 228

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLC- 322
            +  ++   G   ++K++ +  ++Q        +  D     L G  Q  NA VA     
Sbjct: 229 -KKSTLYLLGDQFNIKELSSEEDEQTFRFEGMFRSIDPLTITLNGAHQRTNAAVAVMTLE 287

Query: 323 -----IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                 A+ ++   + + L +     GR E V   SR  RI +D AH     E +++ +R
Sbjct: 288 VLRQYYALIVEDDALADGLREAKWP-GRLEMV---SRSPRILIDGAHNPEGAESLVQALR 343

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +      + V       +      + K  L + D  IVT+ + RS+   ++ A+++  + 
Sbjct: 344 STYRYDRLHVMMAMV--ENKNHRDVLKHILPIVDTLIVTEPDFRSKLDAELLADLVRDVK 401

Query: 438 ------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK--MSVDCD 487
                   I + +  E +R   ++  + D+ VV G    T++++ +   +   + D +
Sbjct: 402 PAESSFELIVEKDWREGLRKLQQLTGETDLGVVTG----TLYLIGDVRSRILYNSDSE 455


>gi|86605662|ref|YP_474425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. JA-3-3Ab]
 gi|118595697|sp|Q2JVR9|MURD_SYNJA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86554204|gb|ABC99162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           JA-3-3Ab]
          Length = 469

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 124/356 (34%), Gaps = 38/356 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VVS   +             I VV       +  A       P   + +TGT+GK
Sbjct: 62  GVKQVVVSPGIAWDHPLLQEARRQGIEVVGE-----AELAWPFLEHLP--WVGITGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+  + V ++ + +GL     G                       +  +++ ++  ++  
Sbjct: 115 STTTALVAEMFKVAGLEGIPCGNIGL------PLSQVALETWQGRRQPAWIVAELSSYQ- 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EAS H L Q    G     G +T    DH++ H T + Y   K RL    L +    ++
Sbjct: 168 LEASRH-LMQS-SPGSPPRIGVWTTFTPDHLERHGTLERYAGFKARL----LQRAQWRVV 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----DF 302
             +D Y     +   N             ++ L+   A    +  T+ ++G+      DF
Sbjct: 222 NGEDPYLFRRRQDWENTY-----------WVSLQDPQADVFLRGSTLYIQGEAVAELEDF 270

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
               PG   + N L+AA      GI +  +   +     +P R E V     G       
Sbjct: 271 AERCPGSHNLQNLLLAAAAAHLAGIPNTAIQGAIRSFAGMPHRLERVAQIQVGSTPIRFV 330

Query: 363 AHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             + + + E     +  ++    I++   G  +       +  I   +A + ++ +
Sbjct: 331 NDSKATNYEAGWVALNALSPP--IILIAGGRAKQGDPSAWLRLIQAKVARVLLIGE 384


>gi|160895297|ref|ZP_02076068.1| hypothetical protein CLOL250_02856 [Clostridium sp. L2-50]
 gi|156862990|gb|EDO56421.1| hypothetical protein CLOL250_02856 [Clostridium sp. L2-50]
          Length = 451

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 106/284 (37%), Gaps = 30/284 (10%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  NL  DH++ H T + Y N K  + +    +E   ++ 
Sbjct: 162 EISSFQLE--TIVDFHPNVSAVLNLTPDHLNRHYTFENYGNVKKSITKNQT-EEDVVVLN 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
            DD +++ + +           +      ++++          + I   G+  D L    
Sbjct: 219 YDDEHTRAMAEGIRPRVVYFSRLEKPAGGVYVED-------GHIKIEANGEKIDVLALKD 271

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   V N L A G+   +G+   ++ +       V  R E+V T +      VDY 
Sbjct: 272 LILLGAHNVENVLAAVGISYYMGVPVNIIRDVAVSFKAVEHRIEYVKTVAG-----VDYY 326

Query: 364 HTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           + S   + +  +K I+ +     ++  G G D+       +      +  + ++      
Sbjct: 327 NDSKGTNPDAAIKGIQAMVKPTYLI--GGGYDKGSTYDEWIDAFDGKVRCLVLI------ 378

Query: 422 SEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  +KI      HG    + + + +EA++   E     + +++
Sbjct: 379 GQTAKKIAETAKKHGFHNIVFEDDLLEAVKYCHENAKDGEAVLL 422


>gi|148545836|ref|YP_001265938.1| UDP-N-acetylmuramate [Pseudomonas putida F1]
 gi|148509894|gb|ABQ76754.1| UDP-N-acetylmuramate [Pseudomonas putida F1]
          Length = 449

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 130/404 (32%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGVPQNFSVS-----------ARLGDTPFFVVEADEY 162

Query: 191 SHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +          NL  DH D      +       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +   + V+         V + G  G++   +      +  +  +  EG+      + L 
Sbjct: 222 TEQALERVIGM--GCWTPVQTTGEGGQW---QARLLSPDGSRFEVLFEGEVQGVVDWALT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  A+ ++ L     V  R E V    +G  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPAMGIDGLSAFKSVKRRMEKV-AEVQGVTIYDDFAHHPT 335

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R  +    +I V     +  + G        +++ AD  I         D 
Sbjct: 336 AIATTLDGLRKRVGEAPVIAVIEPRSNSMKLGAHRDGLPESVNDADQVIWYAPANLGWDL 395

Query: 426 EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
               A+            + +EA I            +V+   G
Sbjct: 396 AATAAQ----CKVPSVVADSLEAIIERIKGQARPGTHVVIMSNG 435


>gi|222112122|ref|YP_002554386.1| UDP-N-acetylmuramate [Acidovorax ebreus TPSY]
 gi|221731566|gb|ACM34386.1| UDP-N-acetylmuramate [Acidovorax ebreus TPSY]
          Length = 474

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 119/382 (31%), Gaps = 40/382 (10%)

Query: 103 SLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQD 159
              A   L G+H   +LAV GT GK++  S +  I + +GL+   +  G        A+ 
Sbjct: 101 QWLAEHVLQGRH---VLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGVSARL 157

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                P       A + L                  + +    +       NL  DH D 
Sbjct: 158 GAPVRPLAGPGPLATAPLFVIEADEYDTAFFD---KRSKFVHYRPRTAVLNNLEFDHADI 214

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                        L    +P     ++   +     V+         V + G       +
Sbjct: 215 FDDLGQIERQFHHLV-RTVPPSGRVVVNGLEESLARVLHA--GCWSGVANFG-----TAV 266

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
               A        +   G+      + L G     NAL A      +G+  A   E L +
Sbjct: 267 SDFGAQGEPHDFEVLQRGRTVARVQWTLTGVHNQLNALAAIAAAEHVGVTPAQAAEALAR 326

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCG- 391
              V  R E  G   RG  +Y D+AH   +L   L  +R          GRI+ VF    
Sbjct: 327 FENVKRRMELRGM-VRGIAVYDDFAHHPTALRTTLDGLRRRVGPKGEGRGRILAVFEPRS 385

Query: 392 GDRDQGKRPIMGKIALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                G        AL+ AD+A      +  D   +  P   RA+    +P  + +    
Sbjct: 386 NTMKLGTMKAQLPWALEPADLAFCHTAGLDWDAAAALAPMGARAQTAGDLPTLVGQ---- 441

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
             IR A+      D +V    G
Sbjct: 442 --IRAAV---QPGDHIVCMSNG 458


>gi|156342934|ref|XP_001620981.1| hypothetical protein NEMVEDRAFT_v1g222497 [Nematostella vectensis]
 gi|156206509|gb|EDO28881.1| predicted protein [Nematostella vectensis]
          Length = 279

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 72/226 (31%), Gaps = 11/226 (4%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A+            +   G  TN G+ H++     +     K  L+  L   E    +
Sbjct: 1   MGANHQKEIDFLCSIAEPDFGYITNFGKAHLEGFGGIEGVIKGKSELYNYLEKNEKTIFV 60

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD    E  K+            +  +     K+  I     V I     +      L
Sbjct: 61  NLDDTLQNEKTKKLKR-------YSFSTQNSSDIKIDTIEANPMVIIGFN--NLKIHSNL 111

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G +   N   A  +     I+ AL+ E +E       R + + T      I   Y    
Sbjct: 112 IGIYNANNINAAITIGKYFNIEDALIKEAIESYIPSNNRSQLI-TKGSNEIILDAYNANP 170

Query: 367 NSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +S+   I   I+ IT  + +++ G   +  +       KI   LA+
Sbjct: 171 SSMLAAITNFIQLITDKKKVLILGDMFELGKESIEEHKKIVTLLAE 216


>gi|332526636|ref|ZP_08402742.1| UDP-N-acetylmuramate [Rubrivivax benzoatilyticus JA2]
 gi|332110898|gb|EGJ11075.1| UDP-N-acetylmuramate [Rubrivivax benzoatilyticus JA2]
          Length = 452

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 104/317 (32%), Gaps = 29/317 (9%)

Query: 103 SLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
              A   L+G+H   +LAV GT GK++  S +  I +++GL    +     +     +  
Sbjct: 93  QWLAENVLFGRH---VLAVAGTHGKTTTTSMLAWILEQAGLEPGFL-----VGGVPLNFG 144

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDY 219
           ++           + L       +  +     L   R   +  +       NL  DH D 
Sbjct: 145 VS-----------ARLGGGRFFVIEADEYDTALFDKRSKFVHYRPRTAILNNLEHDHADI 193

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                A    +       +P     ++ A D   + V++R       V   G + +    
Sbjct: 194 FPDLAAI-ETQFHHLVRTVPASGRLVVNARDEALQRVLQR--GFWSEVQRFGPKREEPGA 250

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +     +   V +    K     + L GE    NAL A       G+        L   
Sbjct: 251 LRARGEPHAFDV-LRGSLKIGRVEWALLGEHNQLNALAAIAAAEHAGVAPETAAAALASF 309

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E  G    G ++Y D+AH   ++   +  +R       I+             
Sbjct: 310 QNVRRRLELRGEAG-GVKVYDDFAHHPTAMRTTIDGLRRKVGAARILAVFEPRSNTMKLG 368

Query: 400 PIMGKI--ALDLADIAI 414
            +  ++  AL+ AD+A 
Sbjct: 369 TMKAQLPWALEDADLAF 385


>gi|319408826|emb|CBI82483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           schoenbuchensis R1]
          Length = 468

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 75/401 (18%), Positives = 140/401 (34%), Gaps = 47/401 (11%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R          +       +A+TGT+GKS+  + +  +  + G      G   T     
Sbjct: 104 VRARNHFLRQHGFCDQDVPFIAITGTNGKSTTTTLLAHLLDKMGYDVQMGGNIGT----- 158

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                           L+           +E SS  +D      ++   G   NL  DHI
Sbjct: 159 --------------AILTLKPFVKKRIYVIECSSFQIDLS--PSLQPTVGLLLNLTPDHI 202

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----Y 272
           D H +   Y   K RL      K S A++  DDA  + + ++  N G +V ++       
Sbjct: 203 DRHGSFTHYAQVKGRLVS----KASHALVSVDDAACQVLYQQLVNKGHQVKAISKEHCID 258

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G +    K+ +I + Q+  ++    D   +  L G   V NAL+       + I    +
Sbjct: 259 DGFYAEGTKLFSISHGQRCLLA----DLATITSLRGAHNVQNALMVLATLQVLKITDPHI 314

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            +HL     +  R + V     G  ++++ +  +N+ E     + T      I     G 
Sbjct: 315 EKHLASYMGLAHRMQQV--RKMGSVLFINDSKATNA-EASACALATFNDIFWIA---GGQ 368

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PEKIRAEIIHGIPGFIEKGNRIEAIRT 451
            ++ G  P+ G    D    A +      +ED    I +     +   +E   +  AI  
Sbjct: 369 AKESGIAPLKGFF--DKIHKAYLIG--AAAEDFARTIGSAFPFSMSLTLENAVQEAAIDA 424

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                N ++ +V+      +     N E +      ++R++
Sbjct: 425 --THANVKEAVVLFSPACASYDQFKNYEMRGETFISLVRQL 463


>gi|315187136|gb|EFU20893.1| UDP-N-acetylmuramate/alanine ligase [Spirochaeta thermophila DSM
           6578]
          Length = 489

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 124/440 (28%), Gaps = 61/440 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V S+AY              I         L  ++             + G  GK+S 
Sbjct: 74  AVVHSAAYPPTHPQLAEARRLGIPCYPYP-HALGAYSRHF------RSAGIAGVHGKTST 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +    + +   L +  +                T S + L    + L+     +   E 
Sbjct: 127 TALTGTLLRALSLPAATL----------------TGSAVPLWGGRATLTHPSPRYFVAET 170

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +   +             T++  DH+DY+ T +  F A +  +  LLP +   I  AD
Sbjct: 171 CEY---RRHFLHFNPTWIVLTSVEEDHLDYYPTYEDIFAAFLE-YAHLLPPDGALIYCAD 226

Query: 250 DAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGK 298
              + +  +   A      ++  G            + H   Q          T+ V G 
Sbjct: 227 QPGAVQAARTLAAERPDLALIPYGRTAPGPFRITDISQHPGAQTARLAAGLSFTLHVPGA 286

Query: 299 DFDFLFPLPGEFQ---VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                             +A +A      +   +  +   L        R E VG    G
Sbjct: 287 HMLLNATAALALTALIAQDAGLAPSPEAFLSDHAGPLCAALASYTGTRRRSEVVGQAG-G 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAI 414
                DY H   ++   L+  RT   GR I++ F                 + + ADI I
Sbjct: 346 IIFIDDYGHHPTAIRATLEGYRTFYPGRRIILDFMSHTYSRTAALLHEFARSFEPADIVI 405

Query: 415 V---------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +         T      ED  +  + +   +    E  +   A      +L   D+ +  
Sbjct: 406 LHKIYASARETSGAVTGEDLYRAASAMHPFVYYTHEVMD---AFDLCTRILRPGDLFITM 462

Query: 466 GKGHE------TVHIVTNGE 479
           G G              N E
Sbjct: 463 GAGDNWKLGRALYQHYANKE 482


>gi|184156343|ref|YP_001844682.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|183207937|gb|ACC55335.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078397|gb|ABO13369.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acinetobacter baumannii
           ATCC 17978]
 gi|323516088|gb|ADX90469.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 457

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 111/360 (30%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        ++ +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALSAELISIDGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGNVVGEVKWSMTGQHSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 324 T-INGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 383 LADEVI--WYQPEGLD-WDLQPVIEAATNHAQVSRSLDEIIERIVNEAGEGDAVVIMSNG 439


>gi|153854695|ref|ZP_01995945.1| hypothetical protein DORLON_01943 [Dorea longicatena DSM 13814]
 gi|149752799|gb|EDM62730.1| hypothetical protein DORLON_01943 [Dorea longicatena DSM 13814]
          Length = 451

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 109/279 (39%), Gaps = 20/279 (7%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  N   DH++ H T +AY NAK  + +    ++   I+ 
Sbjct: 164 EMSSFQLES--IVDFRPRVSAILNFTPDHLNRHHTMEAYVNAKKNIAKNQT-EDDYCILN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  ++E  +          S     + I+L++   I+N   V  ++   D      + 
Sbjct: 221 YEDRLTREFGEEIKANVLYFSSQRKLEEGIYLEEGNIIYNYGGVKETICHVD---ELQIL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-AHTS 366
           G     N + A  +    G+   ++ E ++    V  R E+V T  +G   Y D      
Sbjct: 278 GTHNHENVMAACAMAAVYGVPVDVIRESVKAFKGVEHRIEYV-TEKKGVTYYNDSKGTNP 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++    ++ ++  T     V+ G G D+       +      +  + ++ D        E
Sbjct: 337 DAAIKGIQAMKRPT-----VLIGGGYDKGSEYTEWINSFDGKVKKLILLGD------TKE 385

Query: 427 KIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI A+    G   ++   +  EA+ TA ++    + +++
Sbjct: 386 KIAADAEKCGFKDYMFVDSFEEAVLTAAKIAESGEAVLL 424


>gi|33592810|ref|NP_880454.1| cyanophycin synthetase [Bordetella pertussis Tohama I]
 gi|33572458|emb|CAE42027.1| cyanophycin synthetase [Bordetella pertussis Tohama I]
 gi|332382223|gb|AEE67070.1| cyanophycin synthetase [Bordetella pertussis CS]
          Length = 857

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 132/387 (34%), Gaps = 56/387 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           LF +   G+ P  I+ VTGT+GK+ VA  V ++ Q+   +++  G               
Sbjct: 480 LFPADDDGRIP--IVGVTGTNGKTVVARLVARLVQKGDCANWAAGR-------------- 523

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQT 222
                        L ++ V    +E  S  +    L   + + G  TN+   DH+     
Sbjct: 524 -----------RVLMNRSVDAAVIENDSGVILGQGLAYDRCLVGVVTNIDDGDHLGDFDI 572

Query: 223 QQAYFNA-KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
            +        R   +++     A++ A D     V++ A      VL  G       L  
Sbjct: 573 NETDRLVDVFRTQIDVVLPGGAAVLNARDP---RVVRMAELCDGEVLYFGLDPALPTLAA 629

Query: 282 V-----CAIHNKQQVTISVEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                  A++ +    +   G+D                   FQ+ N L A     A+ I
Sbjct: 630 HLAEGKRAVYLRAGRIVLARGRDEEALADIAAVPLTHGGRVAFQIENVLAAVAAAWALDI 689

Query: 328 DSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
              L+   +E   +      ++F      G  + VD  H  ++L  +L  I    + R  
Sbjct: 690 PVELIRAGIETFDIDQADAPWQFTLFERNGACVVVDDVHNPSALRALLAAIEQFPARRRA 749

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IP 437
            V+  G DR+       G++     D  ++ DD       P  +    +R  +       
Sbjct: 750 AVYSAGADRNDDALVEQGRLLGTTFDQVVLYDDATVASKRPAGQARSLLRQGLEQSARAT 809

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++ +   AI   ++ L + D  ++
Sbjct: 810 AIADEADHARAIARVLDDLREGDFALL 836


>gi|170719785|ref|YP_001747473.1| UDP-N-acetylmuramate [Pseudomonas putida W619]
 gi|169757788|gb|ACA71104.1| UDP-N-acetylmuramate [Pseudomonas putida W619]
          Length = 449

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 128/404 (31%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGVPQNFSVS-----------ARLGDTPFFVVEADEY 162

Query: 191 SHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +          NL  DH D      +       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLP 307
            +   + V+         V + G  G++   +      +  +  +  EG+    + +PL 
Sbjct: 222 TEQALERVIGM--GCWTPVQTTGEGGQW---QARLLSADGSRFEVLFEGQAQGIVDWPLT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  A+ ++ L     V  R E V    +G  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPAMGIDGLSAFKSVKRRMETV-AEVQGVTIYDDFAHHPT 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R       ++            G        +++ AD  +         D 
Sbjct: 336 AIATTLDGLRKRVGEAPVIAIIEPRSNSMKLGAHRDGLPESVNDADQVVWYAPANLGWDL 395

Query: 426 EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
               A+            + +EA I            +V+   G
Sbjct: 396 AATAAQ----CKVPSVVADSLEAIIERVKGQARPGTHVVIMSNG 435


>gi|15595162|ref|NP_212951.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi B31]
 gi|216264426|ref|ZP_03436418.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
 gi|3914076|sp|O51757|MURC_BORBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2688761|gb|AAC67166.1| UDP-N-acetylmuramate--alanine ligase (murC) [Borrelia burgdorferi
           B31]
 gi|215980899|gb|EEC21706.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
          Length = 468

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 138/418 (33%), Gaps = 52/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           IV SSAY+       + +   N PIL      + L   + + Y       + + G+ GK+
Sbjct: 76  IVYSSAYNKDGLQVLLEAKELNIPILSYP---EALGELSRKYY------SIGIAGSHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +F+  +  + GL+   I   S++  F  ++ +   S I++ +   Y         ++
Sbjct: 127 TTTAFLGVLFNKLGLNPNVI-VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNM 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A ++ +   L K    II 
Sbjct: 186 L-------------------ILTNVDYEHVDFFKNYEALEEAFLQ-YINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD    ++ ++ +     + S G  G     +        +    S  G   +      
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYG-SGDLSDFQISNIAVRSEYFCFSFLGL-LNVELKTV 283

Query: 308 GEFQVYNALVAAGLCIAIG-------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               V N   A                D    ++ + K +    R   V     G     
Sbjct: 284 LFHNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMD 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV---- 415
           DYAH    ++  L  I+     + I++ F         +        L  ADI I+    
Sbjct: 344 DYAHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSAADILILHNIY 403

Query: 416 ----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                + NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 404 LSNRENFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|88608103|ref|YP_506362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
 gi|88600272|gb|ABD45740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
          Length = 325

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 32/239 (13%)

Query: 39  HIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
            +  G IFV I   K   H    FI  A   GA AI+     +            PI+ V
Sbjct: 37  KVGKGEIFV-IADAKN--HDIPCFIETAYLNGASAIITKKDIACPKIP------IPIIRV 87

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+  + +   A+ L   +   ++ +TG+S K+   + +  + +  G + +    T   + 
Sbjct: 88  DDPLRAMEKLAAILIRNYQPTVIGITGSS-KTLTKNLIVTLLKNYGKTCYNEDGTGNFAG 146

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           F            +L   +    S  V   +                    G  T++   
Sbjct: 147 FTLGILNADFPCKFLVLEVDTTCSGNVDLFNQI-------------TLPKVGVITDIRF- 192

Query: 216 HIDYHQTQ-QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           H D      +     K ++F+        A++  D  Y++ +++ A      ++S G  
Sbjct: 193 HQDRSIDLRELIVMEKAKIFQN----GCIAVLNFDTPYTELLLQEARKNKATIISFGRN 247


>gi|282883313|ref|ZP_06291907.1| bifunctional protein FolC [Peptoniphilus lacrimalis 315-B]
 gi|281296817|gb|EFA89319.1| bifunctional protein FolC [Peptoniphilus lacrimalis 315-B]
          Length = 434

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 148/398 (37%), Gaps = 66/398 (16%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS------- 166
               + + GT+GK S + F+ +I +    S F++G  ++    +  +R+           
Sbjct: 38  SMKFIHIAGTNGKGSTSYFLYEILK----SKFKVGLYTSPGLTSYRDRIVVGDLRISQSE 93

Query: 167 -------------------------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                                          A  Y   +    V +E    G    R D 
Sbjct: 94  FLSIGEEILEKEKLILDRYGELNKFEFLTTIAFIYFKRKNCQLVVLEVGMGG----RCDS 149

Query: 202 IKLI------AGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +I          T++  DH+ Y   T +   + K      ++ +    +    D   K
Sbjct: 150 TNIIKAENKLISIITSISYDHMQYLGNTIEEISSEKA----GIICQNGIVVTSNKD---K 202

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +++K   +   +  +  Y  K + +K + +     +  +++E KD++      G +Q+ N
Sbjct: 203 KILKVLQDECKKKNASIYYSKDLCVKILKSDLQGSKFILNLEKKDYEISLDQIGLYQIEN 262

Query: 315 ALVAA----GLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           +++       L     ID   +    L K     GR + V   S+  RI +D AH    +
Sbjct: 263 SILCLYSLFILIKKALIDFDFLKATKLIKDAKWKGRMDLV---SKNPRILLDGAHNIGGI 319

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-EDPEKI 428
           E +  N++     ++ +V     D+D      M +   ++AD+ I+ D   +S ED E +
Sbjct: 320 EKLRDNLKLFYFDKLYLVSSILKDKD---HKKMLEEIGEIADLLILVDLESKSNEDIEIL 376

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             E    +   + K +  EA+   + M    D+++V+G
Sbjct: 377 EKEAQISVKKVMCKSSLKEALNYIVPMARPDDLILVSG 414


>gi|70732772|ref|YP_262535.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas fluorescens Pf-5]
 gi|68347071|gb|AAY94677.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas fluorescens Pf-5]
          Length = 467

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 125/410 (30%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 83  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 136

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     +      +     +P ++ +A  Y S+           
Sbjct: 137 SMLAWVLEHAGMSPGFL--IGGVPQNFAVSARLGGTPFFVIEADEYDSAFFDKRSKFVHY 194

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I    +
Sbjct: 195 ------------RPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPTTE 241

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGE 309
              + V++        V + G  G++          +     +  EG       + L G+
Sbjct: 242 PALQRVIEM--GCWTPVQTTGAGGQWQV---KLLSADGSAFEVMFEGVSQGVVEWELTGQ 296

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+  ++ +  L     V  R E V     G  IY D+AH   ++
Sbjct: 297 HNVANALATLAAARHVGVVPSMGIAGLSAFKSVKRRMEKV-AEVHGVTIYDDFAHHPTAI 355

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLADIAI------VTDDNPR 421
              L  +R       ++            G        +++ AD  I      +  D   
Sbjct: 356 ATTLDGLRKRVGDAPVIAIIEPRSNSMKLGAHRDGLPESVNQADQVIWYAPANLGWDLAA 415

Query: 422 SE---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +        I ++ + GI            I            +V+   G
Sbjct: 416 TAALCTVPSIVSDSLEGI------------IERVKSQAKPGTQVVIMSNG 453


>gi|295135719|ref|YP_003586395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Zunongwangia profunda SM-A87]
 gi|294983734|gb|ADF54199.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Zunongwangia profunda SM-A87]
          Length = 450

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 108/300 (36%), Gaps = 29/300 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G+ GK+++ S +  +                +            + I L     ++
Sbjct: 106 VVVGGSHGKTTITSMILHVMHYHDRQ---------VDYMVGAQLEGLENTIQLNDDNDFI 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  ++    SS    + +    +      + +  DHI+   T + Y   + R+F   
Sbjct: 157 VIEGDEYL----SSAIDLRPKFHLYEPNIALLSGIAWDHINVFPTYEDYIE-QFRIFVSK 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      +   ++   K++++ + N            K  +      I + + + ++ EG
Sbjct: 212 IVNGGILVYNEEEPELKKIVENSTNPIR---------KHPYHTPEYYIEDGETILVTPEG 262

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    + G+  + N   A  +C  +G+D     E +        R + +  +     
Sbjct: 263 ---DMPLEIFGKHNLSNLAGAKWVCQHMGVDEEDFYEAIASFKGASKRLQKIKESGD-FI 318

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415
           ++ D+AH+ + +   LK ++    G+ I+            +  + +   +LD AD AIV
Sbjct: 319 VFKDFAHSPSKVNASLKAVKEQFQGKKIIACLELHTFSSLNQDFITEYKNSLDAADEAIV 378


>gi|160903087|ref|YP_001568668.1| UDP-N-acetylmuramate--alanine ligase [Petrotoga mobilis SJ95]
 gi|160360731|gb|ABX32345.1| UDP-N-acetylmuramate--alanine ligase [Petrotoga mobilis SJ95]
          Length = 452

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 81/221 (36%), Gaps = 10/221 (4%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NL  DH++++  +     + +  F +   +    I+  DD +  +     H    +V
Sbjct: 173 IINNLRPDHLEHYNNEFEKLESSLYKFAKNTKE--LVILNGDDVHLNKW----HLNEKKV 226

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAI 325
           L  G   K  ++ K    +N  QV        +  D    LPG    Y+AL +  L + +
Sbjct: 227 LYFGQSEKADYIIKNRHQYNGYQVFEIYHKNTYIGDITLNLPGLHYAYDALASTALSLEL 286

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-LEMILKNIRTITSGRI 384
           GI+ + + E   + + V  RF  +        I  DYAHT +  LE I          +I
Sbjct: 287 GIEFSTIKETFHRYNSVGRRFNILYDKDN-LSIIDDYAHTPDEILETIKATKEYFPKRKI 345

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           I +F                  L  +D  +V       E+P
Sbjct: 346 ITIFQPHRYTRLYFHINDFIDVLKYSDEVLVYRIYSAFEEP 386


>gi|320161737|ref|YP_004174962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea
           thermophila UNI-1]
 gi|319995591|dbj|BAJ64362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea
           thermophila UNI-1]
          Length = 460

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 115/328 (35%), Gaps = 40/328 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              + P  ++ +TG++GK++  + V ++  R+                    +      I
Sbjct: 104 FMEEVPCRVIGITGSAGKTTTTTLVGRMASRA---------------VVAPQKAWVGGNI 148

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +         Q    V +E SS  L             +  N+  +H+D H T +AY  
Sbjct: 149 GVPLIDRLDEIQPADVVVLELSSFQLQWITRS---PQVAAVLNITPNHLDRHGTMEAYTA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA 284
           AK R+ E        A++  +DA +  + ++       ++S G     +GK         
Sbjct: 206 AKARILE-FQSATDIAVLGREDAGAWGLREKVRG---DLISFGLNHPAEGKGTFYDNGWL 261

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            +  + V    E         L G   + N L A  + IA G     +L+ ++    VP 
Sbjct: 262 WYQGEMVE---EALFERGKIALRGTHNLLNVLAACAIGIAAGFPPEALLDGVQGFGGVPH 318

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V    RG R Y D   T  + E  +  IR+       +V   GG   +     +  
Sbjct: 319 RLELV-REWRGVRWYNDSIAT--APERTIAAIRSFEE---PLVLMLGGRDKKLPWDSLAD 372

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  +  D  +V       E  EKI   I
Sbjct: 373 LIHERVDHVVV-----FGEAAEKIAHAI 395


>gi|90423695|ref|YP_532065.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisB18]
 gi|118595684|sp|Q216E0|MURD_RHOPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90105709|gb|ABD87746.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisB18]
          Length = 466

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 31/255 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  + +++G  +   G   T                    
Sbjct: 112 PDAPFVAITGTNGKSTTTALIAHLLRQAGFDTQMGGNIGT-------------------A 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            LS           VE SS+ +D      +    G   N+  DH+D H + + Y   K R
Sbjct: 153 ILSLEPPAAGRVHVVEMSSYQIDL--TPSLDPSVGILLNVTEDHLDRHGSIEHYAAVKQR 210

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P    AI+  DD +S    +R    G  VL +  +     L     + N     
Sbjct: 211 LVAG-VPDGGTAIVGVDDDFSATAAERVALDGKTVLRLSVK---RPLANGIVVENNAIYR 266

Query: 293 ISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           ++   ++        G         NA  AA   +A+G+D   +   L     +  R E 
Sbjct: 267 VTDGEREAIARIDGIGSLRGLHNAQNAAAAAAAVLALGVDREALQRGLRSFPGLAHRMEQ 326

Query: 349 VGTNSRGGRIYVDYA 363
           VG   +G  ++V+ +
Sbjct: 327 VG--RQGETLFVNDS 339


>gi|325578748|ref|ZP_08148795.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159572|gb|EGC71704.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 451

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 85/268 (31%), Gaps = 20/268 (7%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D      A    +       +P     + +AD+   KE +     +  ++
Sbjct: 183 IINNISFDHADIFDDLHAIQR-QFHHMIRTIPSTGRVLSFADEQSVKETLNMGCWSEQQL 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +  G +       +       +        K  +  + + G+  ++NAL+A       G+
Sbjct: 242 IGKGKE----WFAERITNDCSEFAVFHHGEKVAEVKWNIVGQHNMHNALMAIAAAYHAGV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RII 385
                 + L        R E V     G  +Y D+AH   ++   L  +R    G  RI+
Sbjct: 298 KIEDACQALGSFINAKRRLE-VKGEVNGITVYDDFAHHPEAILATLTALRDKVGGGVRIL 356

Query: 386 VVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEII-HGIPGFI 440
            V          G        AL  AD   +         P+ I    AEI    +    
Sbjct: 357 AVLEPRSNTMKMGVHKDEIAPALGRADAVFMLQ-------PDNIPWDVAEIAGQCVQPAH 409

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             GN  + +   +      D ++V   G
Sbjct: 410 YTGNVDKLVDMIVAEAKPTDHILVMSNG 437


>gi|291569849|dbj|BAI92121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrospira
           platensis NIES-39]
          Length = 454

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 104/348 (29%), Gaps = 31/348 (8%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVAS 131
            +A  L   S  +  + P L    +     +               + +TGT+GK++  +
Sbjct: 61  DTAPDLVVVSPGVPWDLPALETARSLGIETIGEMELAWRNLQDIPWVGITGTNGKTTTTA 120

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + +I + +G ++   G     +      +    S                    V A  
Sbjct: 121 LIAKIFEVAGSAAPACGNIGNAACELALQQQQNSSTPL---------------DWVIAEI 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +    G +T    DH++ H T   YF  K RL E         +   DDA
Sbjct: 166 SSFQIESSSTLAPKIGIWTTFTPDHLNRHYTLDNYFRIKGRLMER----SQVQVFNGDDA 221

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGE 309
           Y +     A     + +     G    L         Q+  +   G+    +    + G+
Sbjct: 222 YLRR---AAPELWPQAVWTSVNGAEELLGDRVMGVYIQENWVYQNGEAIAPVDSLKMVGD 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L+A       GID   +   +     VP R E V        I    A   ++ 
Sbjct: 279 HNRQNLLMAVAAARIAGIDKEAIAHAISIFPGVPHRLEEVSAWMGIRWINDSKATNYDAA 338

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           ++ L  +        +++   G  +       +  I    A + ++  
Sbjct: 339 QVGLAAVEP-----PVILIAGGEAKAGDDTDWINTIHQKAAAVLLIGS 381


>gi|74316135|ref|YP_313875.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiobacillus
           denitrificans ATCC 25259]
 gi|118595702|sp|Q3SMH5|MURD_THIDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|74055630|gb|AAZ96070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 474

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 149/435 (34%), Gaps = 50/435 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-------SRLYGKHPENILAV 120
           A+ +V+S    L + +        +  V +   F    A       +    +    ++A+
Sbjct: 73  ADMLVLSPGVPLSEPAVAQAVAQGVEAVGDVELFARALAVLNAQRAALPAPQAAMRVIAI 132

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSYLS 178
           TG++GKS+V +    +C+ +GL+    G      + +  +  +   P P           
Sbjct: 133 TGSNGKSTVTAMCGDMCRMAGLTVCVAGNIGLPVLDALHEIEQGAAPLPQ---------- 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E SS  L+      +   A +  NL  DH+D +    AY  AK R+F    
Sbjct: 183 -----VWVLELSSFQLE--TTSSLDATAAAVLNLSEDHMDRYPDMAAYAAAKARIFSG-- 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++  DD  +  +       G  V+S G                + ++ +  +  
Sbjct: 234 --NGVQVLNRDDPRTLAMAI----PGRHVVSFGL---DRCPTDENFGLCEDELCLGGDML 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               +  +PG     NAL A  L  A+ +    +L  L     +P R E V  +  G   
Sbjct: 285 MPLSVLAVPGLHNAANALAALALTRALDLPIEALLRGLMHFKGLPHRVEKV-ADIDGVTW 343

Query: 359 YVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           Y D       + E  L  +      R  VV   G  + Q   P+   +A +   + ++  
Sbjct: 344 YDDSKGTNVGATEAALYGM----GRRKAVVILGGDGKGQDFGPLKAAVAANARAVVLI-- 397

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                 D   I A I              +A+  A  +    D ++++     +  +  N
Sbjct: 398 ----GRDAVAIEAAIEDSGVASYRADTLPDAVEQAARLAEPGDAVLLS-PACASFDMFRN 452

Query: 478 GEKKMSVDCDIIREI 492
              +  V  D ++++
Sbjct: 453 YVHRAEVFVDAVKKL 467


>gi|295698675|ref|YP_003603330.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Riesia
           pediculicola USDA]
 gi|291157111|gb|ADD79556.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Riesia
           pediculicola USDA]
          Length = 485

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 20/264 (7%)

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           K  +Y + +    V     SH +               T L  DHI+ ++          
Sbjct: 155 KECAYWNERNEIVVIEMDESHPIFL----QFDPSVLIVTGLEVDHINNYENSFKKLKHTF 210

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F + L   S  I+  +++  + ++K   N  C++++ G++ K  H + +     K + 
Sbjct: 211 LKFIQKLSHFSKVILCIENSAIRSIIK---NIHCQMITYGFR-KDSHFRILSYEQKKNRC 266

Query: 292 TISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             S+       + F    PG   V NA     L    GI    + + ++    V  R +F
Sbjct: 267 HFSILDPSHSIYSFQMNTPGVHNVLNATSTIILGKLFGIKEDRIQKSIKCFKGVSNRLDF 326

Query: 349 VG----TNSRG----GRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
           +G     N  G      +  DY H  N++   ++ IR      RII++F         K 
Sbjct: 327 LGKFILKNQDGNFCKFLLISDYGHHPNAIRFTIETIRVGWKRNRIIMIFQPHRYTRFQKF 386

Query: 400 PIMGKIALDLADIAIVTDDNPRSE 423
                  L+  D+ ++T+     E
Sbjct: 387 YNYFLNVLEKVDLLLITEICSSGE 410


>gi|225549420|ref|ZP_03770392.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
 gi|225370048|gb|EEG99489.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
          Length = 468

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 139/418 (33%), Gaps = 52/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           IV SSAY+       + +   N PIL      + L   + + Y       + ++G+ GK+
Sbjct: 76  IVYSSAYNKDGLQVLLEAKELNIPILSYP---EALGELSRKYY------SIGISGSHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +F+  +  + GL+   I   S++  F  ++ +   S I++ +   Y         ++
Sbjct: 127 TTTAFLGVLFNKLGLNPNVI-VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNM 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A ++ +   L K    II 
Sbjct: 186 L-------------------ILTNVDYEHVDFFKNYEALEEAFLQ-YINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD    ++ ++ +     + S G  G     +        +    S  G   +      
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYG-SGDLSDFQISNIAVRSEYFCFSFLGL-LNVELKTV 283

Query: 308 GEFQVYNALVAAGLCIAIG-------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               V N   A                D    ++ + K +    R   V     G     
Sbjct: 284 LFHNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMD 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV---- 415
           DYAH    ++  L  I+     + I++ F         +        L  ADI I+    
Sbjct: 344 DYAHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSAADILILHNIY 403

Query: 416 ----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                + NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 404 LSNRENFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|325844609|ref|ZP_08168252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sp. HGF1]
 gi|325489034|gb|EGC91421.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sp. HGF1]
          Length = 449

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 21/267 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +   +       N+   H+DYH     Y  AK+ L +     +       DD   + + +
Sbjct: 177 MPLFRPRISLLLNITEAHLDYHLNLDEYRQAKLNLIKNQTSDDYCVYNSEDDVIVEGIKQ 236

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                    LS   +G +I      A++ K++  I V+         L G+  + + L A
Sbjct: 237 TKATCIPFSLSEKVEGAYI---LEGAVYFKEEWIIDVKD------ILLKGDHNLQDVLGA 287

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + +  G D   +   L++   V  R +FVG   RG +    Y + S +  +I      
Sbjct: 288 VAVSLLYGCDLEAIRTVLKRFAGVKHRLQFVG-EIRGVK----YYNNSKATNIIATQTAL 342

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                 I++   G DR      + G +       +IVT      E   + +A     +  
Sbjct: 343 KAFDSPIILIAGGLDRG---HDLSGLVPYFNKIKSIVT----YGETKHRFKALADEHLMP 395

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                +  +A+  A E     D+++ A
Sbjct: 396 CTVYDHLDQAVEDAYEQAIAGDIVLFA 422


>gi|307154774|ref|YP_003890158.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7822]
 gi|306985002|gb|ADN16883.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7822]
          Length = 451

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 115/378 (30%), Gaps = 37/378 (9%)

Query: 82  FSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  +  + P+LV    +    +           P   + VTGT+GK++  + V  I Q 
Sbjct: 71  VSPGVPWDLPVLVEAREKGIDTIGELELAWRSLKPSQWVGVTGTNGKTTTTALVTAIFQA 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G  +   G                 +   L      L      +  + A          
Sbjct: 131 AGFHAPACGNIG-------------YAACELV-----LKQDQKPYDWIIAEISSYQIESS 172

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G +T    DH++ H+T   Y+N K      LL +    I   DD Y   +   
Sbjct: 173 LDLSPKIGIWTTFTPDHLERHKTLSNYYNIKA----ALLHRCRRQIFNGDDPYLHNMGLT 228

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                      G +       K   + +   V    E      LF + GE    N L+A 
Sbjct: 229 QWQDAYWTTVKGKEALLCDPSKGVYLQDNWVVAFG-ELIAPINLFKMVGEHNQQNLLMAV 287

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 G+D   + E +     VP R E + T +    I    A   ++  + L ++ T 
Sbjct: 288 AAARLAGVDKQAITETMATFSGVPHRLELIRTRAGVAYINDSKATNYDAAVVGLSSVETP 347

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPG 438
                 ++   G  +       +  I    A + ++       E        +   G   
Sbjct: 348 A-----ILIAGGQAKKGDDTEWIKLIKAKAAAVLLI------GEAASTFAQRLHDSGYDS 396

Query: 439 FIEKGNRIEAIRTAIEML 456
           +       +A++   ++ 
Sbjct: 397 YEIVETMDKAVQRGADLA 414


>gi|160871689|ref|ZP_02061821.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Rickettsiella grylli]
 gi|159120488|gb|EDP45826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Rickettsiella grylli]
          Length = 452

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 109/316 (34%), Gaps = 22/316 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A+ +   +  ++LAV+GT GK++V+S +  I   +GL+   +     ++     +  
Sbjct: 93  QWLAAHVLRNY--HVLAVSGTHGKTTVSSLLSWILAAAGLNPGFL--IGGLAKNFDHSAC 148

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 ++ +A  Y ++                               NL  DH D    
Sbjct: 149 LGKGDFFVIEADEYDTAFFDKRSKFIHYH------------PKTLILNNLEFDHADIFPN 196

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A       L    +P +   I    D   ++V+ + +       +   + K +     
Sbjct: 197 LDAIKMQFSYLL-RTVPSQGLIICPQRDRNIQQVLSQGYWTPIE-YTGNEKNKEVIWHTA 254

Query: 283 CAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               +  Q  I  +  K  +  + L GE    NA+ A      +GI     +  L +   
Sbjct: 255 LLKADASQFEIYYKNSKQGEVHWSLIGEHNAANAISAVAAAHHVGIHPQKAIAALNQFQG 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
           +  R E +     G  +Y D+AH   ++   L  +R  I   R++V+  CG    +  R 
Sbjct: 315 IKRRLE-IYKKINGITLYDDFAHHPTAIAATLSGLRKKIGKKRLLVILECGTHTMRSNRH 373

Query: 401 IMG-KIALDLADIAIV 415
                 +L  AD   +
Sbjct: 374 QKTLGPSLQEADKLWL 389


>gi|119897159|ref|YP_932372.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Azoarcus sp. BH72]
 gi|119669572|emb|CAL93485.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Azoarcus sp. BH72]
          Length = 448

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 117/362 (32%), Gaps = 39/362 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++  S +  + + +GLS   +     +      +   T SP ++ +A 
Sbjct: 103 RWVLAVAGTHGKTTTTSLLAWMLEDAGLSPGFL--VGGVPKNFGVSARLTDSPFFVIEAD 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y ++                       +       NL  DH D      A    +    
Sbjct: 161 EYDTAFCDKRSKFVHY------------RPRTAILNNLEFDHADIFADLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP++   +  A +   K V+ R   +     +              A     +    
Sbjct: 208 VRTLPRQGRIVANAREDALKRVLARGCWSELEWFN------DAAQWSAAAGARDAEAVFR 261

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  ++      PL G     NAL A      +G+     +  L +   +  R E  G  +
Sbjct: 262 LGDEELGRVEMPLAGSHNRENALAAIAAARHVGVPPQQAIASLARFEGIKRRLELRG-RA 320

Query: 354 RGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDR---DQGKRPIMGKIALDL 409
           RG  +Y D+AH   ++ + ++   R    GRI+ V     +       K  + G +A   
Sbjct: 321 RGVAVYDDFAHHPTAIALTVEGLRRREPEGRILAVLEPRSNTMKLGVMKAQLPGSLAQAD 380

Query: 410 ADIAI---VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A       +  D   +  P   RA++           +    ++         D ++V  
Sbjct: 381 AVFCYAGGLGWDAAAALAPLGERAQV---------HEDLGALVQAVAATARPGDHVLVMS 431

Query: 467 KG 468
            G
Sbjct: 432 NG 433


>gi|313496921|gb|ADR58287.1| UDP-N-acetylmuramate [Pseudomonas putida BIRD-1]
          Length = 449

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 130/404 (32%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L       V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGVPQNFSVS-----------ARLGDTPFFVVEADEY 162

Query: 191 SHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +          NL  DH D      +       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLV-RTIPGEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
            +   + V+         V + G  G++   +      +  +  +  EG+      + L 
Sbjct: 222 TEQALERVIGM--GCWTPVQTTGEGGQW---QARLLSPDGSRFEVLFEGEVQGVVDWALT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  A+ +E L     V  R E V    +G  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPAMGIEGLSAFKSVKRRMEKV-AEVQGVTIYDDFAHHPT 335

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R  +    +I V     +  + G        +++ AD  I         D 
Sbjct: 336 AIATTLDGLRKRVGEAPVIAVIEPRSNSMKLGAHRDGLPESVNDADQVIWYAPANLGWDL 395

Query: 426 EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
               A+            + +EA I            +V+   G
Sbjct: 396 AGTAAQ----CKVPSVVADSLEAIIERIKGQARPGTHVVIMSNG 435


>gi|315918003|ref|ZP_07914243.1| folylpolyglutamate synthase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059318|ref|ZP_07923803.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_5R]
 gi|313684994|gb|EFS21829.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_5R]
 gi|313691878|gb|EFS28713.1| folylpolyglutamate synthase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 414

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 138/370 (37%), Gaps = 55/370 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST------------------ISSFA 157
            I+ + GT+GK S A+ +++I   +G    +                        I  + 
Sbjct: 39  KIIHIAGTNGKGSTATTLERILLEAGYQVGKYTSPHILKFNERIIANGKQISDEEIEKYY 98

Query: 158 QDNRLTTPSP--------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG-- 207
                             I  A   SY   + + +V +E    G    RLD   +     
Sbjct: 99  YQVEKIMEEEKIDATFFEITTAMMFSYFRDKKLDYVVLETGMGG----RLDATNVSQAEL 154

Query: 208 -SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              TN+  DH +Y   +       K  +      K  P +I AD    +E ++       
Sbjct: 155 CIITNVSLDHTEYLGDSIYKIAKEKAGII-----KNCPKVIVAD--QQEEFLQAILEEKA 207

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V++V  +              K    I +EGK++ F   L G++Q +N L A      +
Sbjct: 208 EVINVLNKYAD---ATYQLDFEKFMTEIKIEGKNYHF--SLFGDYQYHNFLCAYEAAKQL 262

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI   ++    EK+     RFE     +R   + +D AH  + +  ++K ++       +
Sbjct: 263 GISEEIIQRAAEKVVWEC-RFEI---AARQPLVILDGAHNPDGVRELVKIVKQHYHKTEV 318

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKG 443
            +      +D+  +P++  +A +++D  I+T   DNPR    +++  ++ +    F  + 
Sbjct: 319 AILTS-ILKDKDIKPMLEMLA-EVSDDIILTSLADNPRGSTAKELF-DLANNPDIFSMEE 375

Query: 444 NRIEAIRTAI 453
           +  +A +  I
Sbjct: 376 DMKQAYKLLI 385


>gi|104779893|ref|YP_606391.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Pseudomonas entomophila
           L48]
 gi|95108880|emb|CAK13576.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas entomophila L48]
          Length = 449

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 131/402 (32%), Gaps = 35/402 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     +      +     +P ++ +A  Y S+           
Sbjct: 119 SMLAWVLEHAGMSPGFL--IGGVPQNFSVSARLGGTPFFVVEADEYDSAFFDKRSKFVHY 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                               NL  DH D      +       L    +P E   I    +
Sbjct: 177 H------------PRTAILNNLEFDHADIFPDLASIERQFHHLV-RTIPSEGLVIHPTTE 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGE 309
              + V+         V + G  G++   +      +  +  +  EG+    + + L G+
Sbjct: 224 QALERVIGM--GCWTPVQTTGEGGQW---QARLLSPDGSRFEVLFEGEAQGVVDWALTGQ 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+  A+ +E L     V  R E V    +G  IY D+AH   ++
Sbjct: 279 HNVANALATLAAARHVGVAPAMGIEGLSAFKSVKRRMEKV-AEVQGVTIYDDFAHHPTAI 337

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
              L  +R  +    +I V     +  + G        +++ AD  I         D   
Sbjct: 338 ATTLDGLRKRVGEAPVIAVIEPRSNSMKLGAHRDGLPESVNDADQVIWYAPPNLGWDLAG 397

Query: 428 IRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             A+            + +EA I            +V+   G
Sbjct: 398 TAAQ----CKVPSVVADSLEAIIDRVKGQARPGTHVVIMSNG 435


>gi|126642987|ref|YP_001085971.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acinetobacter baumannii
           ATCC 17978]
          Length = 420

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 111/360 (30%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        ++ +
Sbjct: 64  QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFVVE 121

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 122 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 169

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 170 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALSAELISIDGSHF 226

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 227 KVLENGNVVGEVKWSMTGQHSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLG 286

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 287 T-INGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 345

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 346 LADEVI--WYQPEGLD-WDLQPVIEAATNHAQVSRSLDEIIERIVNEAGEGDAVVIMSNG 402


>gi|302528471|ref|ZP_07280813.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           AA4]
 gi|302437366|gb|EFL09182.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           AA4]
          Length = 468

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 135/410 (32%), Gaps = 55/410 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             +V S  +          +   + V+ +      +       +HP   L +TGT+GK++
Sbjct: 63  ALVVTSPGWRPTSPLLVAAAEAGVEVIGDVELAWRI---GQLREHPPAWLVITGTNGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               ++ I + +G  +   G                         +      G   ++VE
Sbjct: 120 TVGMLESILRAAGADAVACGNVG--------------------YPVLDAVRGGHQVLAVE 159

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L  H    I   A    NL  DH+D+H + + Y  AK R    +  +    +   
Sbjct: 160 LSSFQL--HWSSTIAPDASVVLNLAEDHLDWHGSMEEYAAAKGR----VHQRSRAVVHNV 213

Query: 249 DDAYSKEVMKRAHNAGCRVLSV-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           DD +S  + +     G R +         G  G    L    A     + +     +  D
Sbjct: 214 DDPWSTRIAEEHAPDGARRIGFVLDTPRAGELGLVEDLLVDRAFGADPETSAEELAEIAD 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                P    + NAL AA L  A G+  A V + L      P R   V     GG  YV+
Sbjct: 274 VRPAGP--HNLANALAAAALARAHGVSPAAVRKGLRAYEPAPHRA--VEVAEIGGVRYVN 329

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            +  +N        + ++ +   +V    G  +      ++  +   L    ++  D+P 
Sbjct: 330 DSKATNP----HAALGSLLAHESVVWIAGGQLKGASVDDLVAAVGGRLRAAVLLGVDSPV 385

Query: 422 SE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            E       P+     ++ G    +           A  +    DV+++A
Sbjct: 386 IEAALARHAPDVPCNRLLPGDDEPMTAAV-----NAASALARPGDVVLLA 430


>gi|91228512|ref|ZP_01262434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           alginolyticus 12G01]
 gi|91187946|gb|EAS74256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           alginolyticus 12G01]
          Length = 437

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 141/401 (35%), Gaps = 64/401 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L              VV +      LFA  +     + ++A+TG++GKS
Sbjct: 69  ADLIVTNPGIALATPEIQAVLAKGTAVVGDIE----LFAWAVQ----KPVIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V      +   +GL     G     +                      L  Q      +
Sbjct: 121 TVTDLTGVMANAAGLDVGVGGNIGVPA--------------------LDLLEQDADLYVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+F       + A++ 
Sbjct: 161 ELSSFQLE--TTSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFNH----AALAVVN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFDFL 303
            DD       +   +A   +++ G   +   L+    +   + + Q+V  S E       
Sbjct: 215 RDDQ------ETFPDAEMPLVTFGSDNQDFGLEVDGNRTWLLDHGQRVVASDE------- 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+  + NALVA  L  A  ++    L  L+    +  R + V  N +G +   D  
Sbjct: 262 LKLVGKHNLSNALVALALLKAADVNYHKALNTLKNYTGLTHRCQVVADN-QGVKWVNDSK 320

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            T+ +  M   +    T    ++V G G   D    P+    A     +     D     
Sbjct: 321 ATNIASTMAALSGLESTGKLYLLVGGVGKGADFS--PLKPIFATLNLQLCCFGADG---- 374

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E +      I      + I+     L   D++++
Sbjct: 375 ------DEFMPLHESAIRFDTMEDVIQQVSSQLKPGDMVML 409


>gi|304314680|ref|YP_003849827.1| UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588139|gb|ADL58514.1| predicted UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 403

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 121/385 (31%), Gaps = 79/385 (20%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+A+V+S +    +F    R                L    L G      + VTGT+GK+
Sbjct: 57  ADAVVISPSMIKTEFMERFRDK--------------LLCRVLEGHRKPKTIVVTGTNGKT 102

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + A+ +  + + +G                              +     S +   ++ V
Sbjct: 103 TTATMMAHVLECAGERVLL-------------GGNAGGGFEGYTELFLRASEEEFDYLVV 149

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E     L+    +   +     TNLG DH+D+H + + Y                     
Sbjct: 150 EVCDMTLEFA-SECFDIDLVVLTNLGEDHMDFHGSMENYR-------------------- 188

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                 + V +        V      G+     ++   +++    + VEG          
Sbjct: 189 ------RMVAEFLKGRDAVVGPAESDGELREAPRLLRTYSEYTGPLRVEGG--------- 233

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             F   NA  A+     +G+   ++ E L     V GR      N  G  +        +
Sbjct: 234 --FNRLNAGAASEALRYLGVPEYIIREGLAGFEPVRGRIRSFIIN--GAYVVAGKTDNPH 289

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPE 426
           +L  +L            V+F     R +  R  I+ ++A    ++ ++    P  ED  
Sbjct: 290 ALRAVLSESEFD------VMFIGTPRRSEEWRLRILDEVAESPPEVLVI---FPGLEDTV 340

Query: 427 KIRAEIIHG--IPGFIEKGNRIEAI 449
            +  E + G  IP  +   +  + I
Sbjct: 341 DMVMEYLEGLEIPSEVITVDDPDEI 365


>gi|163786216|ref|ZP_02180664.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Flavobacteriales bacterium ALC-1]
 gi|159878076|gb|EDP72132.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Flavobacteriales bacterium ALC-1]
          Length = 450

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 101/300 (33%), Gaps = 29/300 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G+ GK+++ S +  +     +          + +              +   L+  
Sbjct: 106 VVIGGSHGKTTITSMILHV-----MYYHDRDVDYMVGA--------QLEGFDVMVKLTED 152

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +   V       SS    + +    +      + +  DHI+   T + Y   +  +F + 
Sbjct: 153 NDFMVLEGDEYLSSPIDMRPKFHLYRPNIALLSGIAWDHINVFPTYENYLE-QFSIFVDS 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +          +DA  K +++ + N   ++            +         +  +    
Sbjct: 212 IVTGGSINYNEEDAEVKRIVEASENQIRKI----------AYQTPQYTVEDGETLLETP- 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +      + G   + N   A  +C  +GID     E +        R E +  NS+   
Sbjct: 261 -EGPMPIEVFGAHNLNNLAGAKWICQHMGIDEDDFYEAISTFKGASKRLEKIAENSK-SV 318

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIV 415
           +Y D+AH+ + +E   K ++   ++  ++               +   K ALD AD+A+V
Sbjct: 319 VYKDFAHSPSKVEATTKAVKEQYSNRTLVACLELHTYSSLNAEFLKEYKGALDAADVAVV 378


>gi|284051225|ref|ZP_06381435.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Arthrospira
           platensis str. Paraca]
          Length = 405

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 104/348 (29%), Gaps = 31/348 (8%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVAS 131
            +A  L   S  +  + P L    +     +               + +TGT+GK++  +
Sbjct: 61  DTAPDLVVVSPGVPWDLPALETARSLGIETIGEMELAWRNLQDIPWVGITGTNGKTTTTA 120

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + +I + +G ++   G     +      +    S                    V A  
Sbjct: 121 LIAKIFEVAGSAAPACGNIGNAACELALQQQQNSSTPL---------------DWVIAEI 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +    G +T    DH++ H T   YF  K RL E         +   DDA
Sbjct: 166 SSFQIESSSTLAPKIGIWTTFTPDHLNRHYTLDNYFRIKGRLMER----SQVQVFNGDDA 221

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGE 309
           Y +     A     + +     G    L         Q+  +   G+    +    + G+
Sbjct: 222 YLRR---AAPELWPQAVWTSVNGAEELLGDRVMGVYIQENWVYQNGEAIAPVDSLKMVGD 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L+A       GID   +   +     VP R E V        I    A   ++ 
Sbjct: 279 HNRQNLLMAVAAARIAGIDKEAIAHAISIFPGVPHRLEEVSAWMGIRWINDSKATNYDAA 338

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           ++ L  +        +++   G  +       +  I    A + ++  
Sbjct: 339 QVGLAAVEP-----PVILIAGGEAKAGDDTDWINTIHQKAAAVLLIGS 381


>gi|257452777|ref|ZP_05618076.1| dihydrofolate synthase [Fusobacterium sp. 3_1_5R]
 gi|257466855|ref|ZP_05631166.1| dihydrofolate synthase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 409

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 138/370 (37%), Gaps = 55/370 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST------------------ISSFA 157
            I+ + GT+GK S A+ +++I   +G    +                        I  + 
Sbjct: 34  KIIHIAGTNGKGSTATTLERILLEAGYQVGKYTSPHILKFNERIIANGKQISDEEIEKYY 93

Query: 158 QDNRLTTPSP--------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG-- 207
                             I  A   SY   + + +V +E    G    RLD   +     
Sbjct: 94  YQVEKIMEEEKIDATFFEITTAMMFSYFRDKKLDYVVLETGMGG----RLDATNVSQAEL 149

Query: 208 -SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              TN+  DH +Y   +       K  +      K  P +I AD    +E ++       
Sbjct: 150 CIITNVSLDHTEYLGDSIYKIAKEKAGII-----KNCPKVIVAD--QQEEFLQAILEEKA 202

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V++V  +              K    I +EGK++ F   L G++Q +N L A      +
Sbjct: 203 EVINVLNKYAD---ATYQLDFEKFMTEIKIEGKNYHF--SLFGDYQYHNFLCAYEAAKQL 257

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI   ++    EK+     RFE     +R   + +D AH  + +  ++K ++       +
Sbjct: 258 GISEEIIQRAAEKVVWEC-RFEI---AARQPLVILDGAHNPDGVRELVKIVKQHYHKTEV 313

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKG 443
            +      +D+  +P++  +A +++D  I+T   DNPR    +++  ++ +    F  + 
Sbjct: 314 AILTS-ILKDKDIKPMLEMLA-EVSDDIILTSLADNPRGSTAKELF-DLANNPDIFSMEE 370

Query: 444 NRIEAIRTAI 453
           +  +A +  I
Sbjct: 371 DMKQAYKLLI 380


>gi|225551700|ref|ZP_03772644.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
 gi|225371727|gb|EEH01153.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
          Length = 468

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 139/418 (33%), Gaps = 52/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           IV SSAY+  D    + +   N PIL      + L   + + Y       + + G+ GK+
Sbjct: 76  IVYSSAYNKDDLQVLLEAKELNIPILSYP---EVLGELSRKHY------SIGIAGSHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +F+  +  + GL+   I   S++  F  ++ +   S I++ +   Y         ++
Sbjct: 127 TTTAFLGVLFNKLGLNPNVI-VGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNM 185

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A ++  + L  K    II 
Sbjct: 186 L-------------------ILTNVDYEHVDFFKNYEALEEAFLQYIDNL-KKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DD    ++ ++ +     + S G  G     +        +    S  G   +      
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYG-SGDLSDFQISNIAVRSKYFCFSFLG-FLNVELKTV 283

Query: 308 GEFQVYNALVAAGLCIAIG-------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               V N   A                D    ++ + K +    R   V     G     
Sbjct: 284 LFHNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMD 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIV---- 415
           DYAH    ++  L  I+     + I++ F         +        L  ADI I+    
Sbjct: 344 DYAHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSAADILILHNIY 403

Query: 416 ----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                + NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 404 LSNRENFNP-DELSVKLFLSIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|94989796|ref|YP_597896.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS10270]
 gi|166224738|sp|Q1JIH1|MURC_STRPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94543304|gb|ABF33352.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS10270]
          Length = 442

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G  GK+S    +  + +    +S+ IG  +   S      +               
Sbjct: 105 FAVAGAHGKTSTTGLLSHVLKNITDTSYLIGDGTGRGSANAQYFVFESD----------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY        NA     +++
Sbjct: 154 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQV 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D   K++      A   +   G++ G       +    N     +  +
Sbjct: 198 ---KKALFVYGEDDELKKI-----EAPAPIYYYGFEKGNDFIAYDITRTTNGSDFKVKHQ 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  P  G+  + NA          GID ALV +HL+    V  RF     N   
Sbjct: 250 GEVIGQFHVPAYGKHNILNATAVIANLFVAGIDMALVADHLKTFSGVKRRFTEKIINDTI 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   +   R    S  I+ +F                 AL+ AD   
Sbjct: 310 II--DDFAHHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY 367

Query: 415 V 415
           +
Sbjct: 368 L 368


>gi|283783550|ref|YP_003374304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
 gi|283441283|gb|ADB13749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
          Length = 533

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 75/466 (16%), Positives = 139/466 (29%), Gaps = 84/466 (18%)

Query: 54  EDGHLFIPQAIA-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
            D H F   AI     +A+V S  ++ +       ++  I V+        L        
Sbjct: 64  ADIHDF--SAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPVMSEVELAWRLRVPSQRTN 121

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   + +TGT+GK+S       +    GL++  +G                        
Sbjct: 122 KPAYWIGITGTNGKTSTTEMTSAMLTACGLNAPAVGNIG-------------------KS 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VE SS  L  H  D + L   + TN+  DH+D+H   ++Y   K +
Sbjct: 163 VSHAALECEHDALCVELSSFQL--HFTDSLALDCAAITNIAADHLDWHGGMESYARDKSK 220

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQG--------KFIHLKKVC 283
           +F  +   +   +  A D    ++   A  A  C+ +    +         K   +    
Sbjct: 221 VFNNV---QKALVYNAQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVKDGWIVDNS 277

Query: 284 AIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +    + T+       E K             + +AL A  L + +  D    +  L +
Sbjct: 278 GVAGGTKGTLKPIVELRELKHLCEPDGSVYPHLLADALTALALALGLTGDVDSSVRALRE 337

Query: 339 LHVVPGRFEFVGT-------NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
                 R + V T        S   R   D   T+        ++ +  +    VV+  G
Sbjct: 338 FAPGGHRIQTVATLMSEDENPSHCIRFVDDSKATNA--HAACASLASFANNS--VVWIAG 393

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPR--SED--------PEKIRAEIIHGIPGFIE 441
           G    G    +    L +    +V   + R   E         P  I ++       +  
Sbjct: 394 GLAKGGHFEDLIANQLHVIKAVVVIGIDQRPIVEALHSSAPHIPVTIVSQDGSCAKSYDC 453

Query: 442 KGN----------------------RIEAIRTAIEMLNKQDVLVVA 465
             +                        + +  A       DV+++A
Sbjct: 454 VDDLVCEYIENTSLVNPDSSFGEAVMRQTVEAAGRYAKPGDVVLLA 499


>gi|291518134|emb|CBK73355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 429

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 120/390 (30%), Gaps = 64/390 (16%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A      +    + +TGT GKS+ +S +  I +  G      G          D      
Sbjct: 96  ADLFLQVYGAQTIGITGTKGKSTTSSLLYHILKTCGKDVLFGGNIGLPIFDITDQIHPR- 154

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                            T +  E S H L+               NL  DH+D++ T + 
Sbjct: 155 -----------------TIIVFELSCHQLEY---AHYSPSKAILLNLYEDHLDHYGTVEK 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y+ AK    + L   +        +            A  +V +              + 
Sbjct: 195 YWYAK----QNLYRNQGYCDFLFCNPDFLPKQGECKAAIIKVKTGDLP--------FSSF 242

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                VT+              G   ++N      +C    I     ++ L     +  R
Sbjct: 243 EEIPGVTLR-------------GTHNLFNTAFVYDVCRRYDISDKEFMDALATFKTLAHR 289

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            EF+GT   G   Y D    S ++E  +  I+ I +   I++   G DR     P++  +
Sbjct: 290 LEFIGTK-DGVDYYDDSI--STTVESCISAIKAIPNAGTILL--GGMDRGIDYDPLVEFL 344

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE----KGNRIEAIRTAIEMLNKQ 459
                +  I+  D+       K+  E +  +  P F+E      +   A     E  +K 
Sbjct: 345 QTRTLEHIILMYDS------GKVLLEKLQAVATPEFMEHVHYIEDLASACAFVKENASKG 398

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             + +      +  +  N E++     + I
Sbjct: 399 TAV-ILSPAAASYGVFKNFEQRGDFFKEQI 427


>gi|15895664|ref|NP_349013.1| folylpolyglutamate synthase [Clostridium acetobutylicum ATCC 824]
 gi|15025411|gb|AAK80353.1|AE007739_9 Folylpolyglutamate synthase [Clostridium acetobutylicum ATCC 824]
 gi|325509814|gb|ADZ21450.1| Folylpolyglutamate synthase [Clostridium acetobutylicum EA 2018]
          Length = 431

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 133/403 (33%), Gaps = 41/403 (10%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST----- 152
             + L L             + V GT+GK S  + + QI   +G                
Sbjct: 22  LERILRLLEILGNPHKKIKCIHVAGTNGKGSTTAMISQILIEAGYRVGMYTSPYIEEFEE 81

Query: 153 ---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT---------------------HVSVE 188
              I++              ++ A+  L  +G+                        +V 
Sbjct: 82  RIQINNNNISKYDLCVIIEKVSDAVDKLKCEGIENPTEFEIITAAAFLYFCIKKVDYAVI 141

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIY 247
               G      + I  I    T++  DH+     T       K  + +E +P     ++Y
Sbjct: 142 EVGLGGRFDATNVINPILTVITSISYDHMAILGDTLGKIAYEKAGIIKEKVP----LVMY 197

Query: 248 ADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                ++EV+KR AH     ++ V           +      Q + I      +D    L
Sbjct: 198 PQHKEAEEVIKRAAHEKEVSIIDVRKGKAEFIDNLLEDNKYFQYIHIKTLRDQYDVKLAL 257

Query: 307 PGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            G+ Q+ N   A++A      +G+  A     L  L  V  +       S    + VD A
Sbjct: 258 LGKHQIINAVTAVMAIETLKNVGVKVAKDHI-LNGLSKVRWKGRLEVLKSN-PLVVVDGA 315

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H S+ + + LK    +      ++   G   D+  + ++  I  D   I  V+  N R+E
Sbjct: 316 HNSDGI-LKLKESIGVHFKYKRLILILGILADKEVKKMVELITKDAYKIITVSPHNNRAE 374

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D +++   +         + +   A   AI    + D++++ G
Sbjct: 375 DEKELCKMVKVYNNECEAEKDYKRAYEKAISYYKEGDMILICG 417


>gi|15674501|ref|NP_268675.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes M1
           GAS]
 gi|56808749|ref|ZP_00366467.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Streptococcus
           pyogenes M49 591]
 gi|71910104|ref|YP_281654.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS5005]
 gi|94987921|ref|YP_596022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS9429]
 gi|94991805|ref|YP_599904.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS2096]
 gi|94993681|ref|YP_601779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS10750]
 gi|209558848|ref|YP_002285320.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           NZ131]
 gi|25008814|sp|Q9A1C7|MURC_STRP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224736|sp|Q1JDE8|MURC_STRPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224737|sp|Q1JNC1|MURC_STRPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224739|sp|Q1J8C6|MURC_STRPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706332|sp|B5XJW3|MURC_STRPZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13621603|gb|AAK33396.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes M1 GAS]
 gi|71852886|gb|AAZ50909.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS5005]
 gi|94541429|gb|ABF31478.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS9429]
 gi|94545313|gb|ABF35360.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS2096]
 gi|94547189|gb|ABF37235.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS10750]
 gi|209540049|gb|ACI60625.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes NZ131]
          Length = 442

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G  GK+S    +  + +    +S+ IG  +   S      +               
Sbjct: 105 FAVAGAHGKTSTTGLLSHVLKNITDTSYLIGDGTGRGSANAQYFVFESD----------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY        NA     +++
Sbjct: 154 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQV 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D   K++      A   +   G++ G       +    N     +  +
Sbjct: 198 ---KKALFVYGEDDELKKI-----EAPAPIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQ 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  P  G+  + NA          GID ALV +HL+    V  RF     N   
Sbjct: 250 GEVIGQFHVPAYGKHNILNATAVIANLFVAGIDMALVADHLKTFSGVKRRFTEKIINDTI 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   +   R    S  I+ +F                 AL+ AD   
Sbjct: 310 II--DDFAHHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY 367

Query: 415 V 415
           +
Sbjct: 368 L 368


>gi|46580910|ref|YP_011718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120601789|ref|YP_966189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris DP4]
 gi|62900546|sp|Q728U6|MURD_DESVH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158513900|sp|A1VBE6|MURD_DESVV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46450330|gb|AAS96978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562018|gb|ABM27762.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris DP4]
 gi|311234601|gb|ADP87455.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris RCH1]
          Length = 433

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 108/380 (28%), Gaps = 87/380 (22%)

Query: 33  VSSD---SRHIQAGWIFVAI---------------VGNKE-----DGHL----FIPQAIA 65
           ++ D   +R I+ G I V +                G +      D       F   A  
Sbjct: 1   MTCDKEKTRGIRPGDIAVVVGTGRSGVAAARLLHAKGARVRVLERDAANVPATFAEWAAG 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR---------KFLSLFASRLYGKHPEN 116
            G E IV  +  +     A +   +P + V   R         + ++           E 
Sbjct: 61  AGVE-IVCGAHDAAHFADAAVVVPSPGVAVATLRPYLPATGGPEVMAEMELAWRELSGEP 119

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTGTSGK++  S    + +  GLS F  G   T                     L  
Sbjct: 120 VIAVTGTSGKTTTVSLCAHMLRTQGLSVFLGGNIGT--------------------PLCE 159

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +G     +               +       N+  +H+DYH   Q Y +AK RLF  
Sbjct: 160 YVLEGKRADVLVIEISSFQLQTCSTFRPRVAMLLNITANHLDYHADMQEYIDAKFRLFR- 218

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                       DD     +          V   G + +                 ++  
Sbjct: 219 --------CQDEDD-----LAVFGEGLAPLVDRYGVKAR----------------RVTFR 249

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D      L G     NA  A       G+     L+ +     +P R E V       
Sbjct: 250 ATDRFAESRLFGAHNRANAEAAWTAAREFGVTLENALQAVATFAPMPHRLEQVAERGGVL 309

Query: 357 RIYVDYAHTSNSLEMILKNI 376
            +      T ++L + L+  
Sbjct: 310 YVNDSKCTTVSALRVALEAF 329


>gi|21909788|ref|NP_664056.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS315]
 gi|28896519|ref|NP_802869.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           SSI-1]
 gi|25453115|sp|Q8K8J5|MURC_STRP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21903973|gb|AAM78859.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes MGAS315]
 gi|28811773|dbj|BAC64702.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus
           pyogenes SSI-1]
          Length = 442

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G  GK+S    +  + +    +S+ IG  +   S      +               
Sbjct: 105 FAVAGAHGKTSTTGLLSHVLKNITDTSYLIGDGTGRGSANAQYFVFESD----------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY        NA     +++
Sbjct: 154 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQV 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D   K++      A   +   G++ G       +    N     +  +
Sbjct: 198 ---KKALFVYGEDDELKKI-----EAPAPIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQ 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  P  G+  + NA          GID ALV +HL+    V  RF     N   
Sbjct: 250 GEVIGQFHVPAYGKHNILNATAVIANLFVAGIDMALVADHLKTFSGVKRRFTEKIINDTI 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   +   R    S  I+ +F                 AL+ AD   
Sbjct: 310 II--DDFAHHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY 367

Query: 415 V 415
           +
Sbjct: 368 L 368


>gi|297543506|ref|YP_003675808.1| hypothetical protein Tmath_0008 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841281|gb|ADH59797.1| domain of unknown function DUF1727 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 446

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 114/370 (30%), Gaps = 62/370 (16%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S    +L     E+ + +TGT+GK++ +  +  I   +G S       + + +      +
Sbjct: 36  SRLIKKLIEPLKESKVMITGTNGKTTTSGLIAHILNTAGKSIVHNKEGANMKTGIATALI 95

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            +         L  L  +       EA+   +    ++ I       TN  RD +D +  
Sbjct: 96  KSSD------FLGNLKKEAAVFEVDEANMPIV----IEDINPNIVIITNFFRDQLDRYGE 145

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA---------------------- 260
                  K++     LP+ES  ++ AD+ ++  +                          
Sbjct: 146 LD-ITVEKVKNALLKLPQESIILLNADEPFTASIGDEIKSKVFYYGIDDNIEGINSSSFE 204

Query: 261 --------HNAGCRVLSVGYQGKFIH-------------LKKVCAIHNKQQVTISVEGKD 299
                   H    R +  G  G +                  +    +     +  + K 
Sbjct: 205 QKYCPICGHKYEYRRIYYGQLGDYYCPNCGKKRPNPHFKATNIFLNEDGINFNLYYKDKI 264

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F F   L G + VYN L A    I + ID   + +  E    + GR +     ++  +  
Sbjct: 265 FTFKSRLIGIYNVYNLLAAISASILLNIDFNTISKATENYWPIEGRLQKTKIKNK--KAI 322

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAI 414
           ++        E  L  +        +++       D      +  + L+          I
Sbjct: 323 INLIKNPIGFESTLNMLSQFNKPLNLLISINDNYADGRDVSWLWDVNLEDFLSKTKVNYI 382

Query: 415 VTDDNPRSED 424
           +T    R+ED
Sbjct: 383 ITS-GLRAED 391


>gi|239978973|ref|ZP_04701497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           albus J1074]
 gi|291450852|ref|ZP_06590242.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces albus
           J1074]
 gi|291353801|gb|EFE80703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces albus
           J1074]
          Length = 476

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL  +   + L VTGT+GK++    +  I   +GL +  +G   T           
Sbjct: 107 EIAWRLRPEGAADWLCVTGTNGKTTTTRMLAAILTAAGLRTEAVGNIGT----------- 155

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                     L  +      +  +         H    ++  + +  NL  DH+D+H + 
Sbjct: 156 ---------PLIDVVLAAEPYDVLAVELSSYQLHWTPSLRAHSAAVLNLAPDHLDWHGSM 206

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY   K R++E        A +Y     + E + RA +      +VG+        ++ 
Sbjct: 207 EAYAADKGRIYEG----NRVACVYNTADPATEALVRAADVEEGCRAVGFTLGAPGPSELG 262

Query: 284 AIHNKQQVTISVEGKDFDFL-------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            +         V  +               P    + NAL AA L  A G+++  V + L
Sbjct: 263 VVEGLLVDRAFVPDRHRQAQELAEVADVDPPAPHNIANALAAAALARAYGVEARAVRDGL 322

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 P R E V        +    A  +++ E  L   R       IV    G  +  
Sbjct: 323 RAFAPDPHRIEKVAEIDGVTYVDDSKATNTHAAEASLNAYRP------IVWIAGGLAKGA 376

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIE------AI 449
               ++   A  L  + ++       +D   IR  +    P   +   +R +      A+
Sbjct: 377 VFDDLVTSAADRLRGVVLI------GQDRALIREALARHAPDVPVVDLDRTDTGAMSAAV 430

Query: 450 RTAIEMLNKQDVLVVA 465
             A ++    D +++A
Sbjct: 431 TAARDLAEAGDTVLLA 446


>gi|196019058|ref|XP_002118918.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
 gi|190577726|gb|EDV18596.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
          Length = 456

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 122/386 (31%), Gaps = 58/386 (15%)

Query: 71  IVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           ++VS     +       F+   + N PI+   +                  N + +TGT+
Sbjct: 72  VIVSPGIPYKYPNPHKIFTICQKHNVPIVTDIDLL---------FKACPKANYIGITGTN 122

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  S +  I Q +   S   G    I     +      S                 H
Sbjct: 123 GKSTTTSLINHILQSNNYKSALGG---NIGIPVLNLPNFNNSN---------------EH 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--- 241
             +E SS+ LD       K    +  ++  DH+D + + + Y NAK+R+F      +   
Sbjct: 165 YILELSSYQLDLMLNY--KFNIAALLSITPDHLDRYASFEDYKNAKLRIFNNQNHNDFAI 222

Query: 242 -SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S      +  Y++ ++K              +     +K     +  +    +++    
Sbjct: 223 ISLNNHINEGIYNQLIIKNTQTIIPTSSQQLLKKGISVIKDKIYDNYFENQAFNLD---- 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G     N  +A  +   I ++S  ++++L     +P R E      +   +  
Sbjct: 279 -LPSSLIGPHNAENIAMAYTIAKIINLNSKQIIKNLNTYIGLPHRMELFLKTEKLSFVND 337

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A    S +  L++ + I           G  +++    +   I        I   D  
Sbjct: 338 SKATNIASTKEALRSFKNIHW------IAGGVFKEKNLDELNNHITEVRHCYLI-GQDYK 390

Query: 421 RS----ED---PEKIRAEIIHGIPGF 439
           R     E    P  I   I + I   
Sbjct: 391 RFISLLEKNNIPYSICNNIENSIQEI 416


>gi|192359523|ref|YP_001983387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cellvibrio
           japonicus Ueda107]
 gi|190685688|gb|ACE83366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio
           japonicus Ueda107]
          Length = 455

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 142/395 (35%), Gaps = 50/395 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+VS   ++   +        I ++ +   F+    +         ++A+TG++ KS+V 
Sbjct: 80  IIVSPGVAVATPALVQAREAGIPIIGDIELFVRHARA--------PMVAITGSNAKSTVT 131

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G   T +                      L    +    +E S
Sbjct: 132 TLVGEMAKAAGIQVAVGGNLGTPA--------------------LELLRDDIELYVMELS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   ++ +     +  N+  DH+D +   +AY  AK+R++          ++  +D
Sbjct: 172 SFQLE--TVNKLNAKVATILNISADHLDRYPDMRAYILAKLRIY----FGAENIVVNRND 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +   +              + G F  L +    +  + +T  +  ++        G  
Sbjct: 226 ILTHPPLAVGAKPVYFGGRADF-GAFGLLDRDGEEYLAKNLTPLLPARELKIR----GRH 280

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NAL A  L  A GI  A +L  L +   +  R E+V  +  G   Y D   T+  + 
Sbjct: 281 NIDNALAALALGDAAGIPMAAMLGALREFRGLRHRCEYV-ASIDGVEFYNDSKGTN--IG 337

Query: 371 MILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             L  I  +      + V   G  + Q    +   +      + ++  D P       I 
Sbjct: 338 ATLAAINGLARVPSRLFVIAGGDGKGQDFTELTASLVASRCVLVLIGRDAP------LIA 391

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +   +P  + +    +A+  ++ +    D +++
Sbjct: 392 SAVGEQVPVHVAQT-LKDAVNLSLALATAGDAVLL 425


>gi|296448265|ref|ZP_06890159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylosinus
           trichosporium OB3b]
 gi|296254217|gb|EFH01350.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylosinus
           trichosporium OB3b]
          Length = 473

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 110/341 (32%), Gaps = 47/341 (13%)

Query: 61  PQAIAQGAEAI-VVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLF--------A 106
            +A AQG   + + S+ +S  D         +    P   V+   +              
Sbjct: 46  AKAEAQGVTLVDLTSADWSAFDALILSPGVPLTHPKPHWTVERAHEAQIEIIGDIELFCR 105

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            R         +A+TGT+GKS+  + +  I +R+G      G   T              
Sbjct: 106 ERERHAPGATFIAITGTNGKSTTTALIAHILRRAGKDVQLGGNIGT-------------- 151

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                  L            +E SS  +D      +    G   NL  DHID H T   Y
Sbjct: 152 -----PILDLEPPSEERIHVIECSSFQIDL--TPSLAPTIGILINLTPDHIDRHGTMDDY 204

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQ-----GKFIH 278
              K RL +        A+I  DD Y   +  R   A C   RV+ V        G +I 
Sbjct: 205 AAVKERLVDG----ADIALIGVDDVYCHAIGARLTQAHCEGQRVIPVSATRALDWGFYIE 260

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             KV    +      +    D      L G     NA  AA      G++   + + L  
Sbjct: 261 SGKVIYRQSGHGPEEAETLGDLGDARALRGAHNAQNAAFAAAAVWHCGLNCEEIADGLAD 320

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +P R E VG   R   I    A  +++ E  L +   I
Sbjct: 321 YPGLPHRMEEVGRRGRVLFINDSKATNADAAEKALLSFDDI 361


>gi|50913664|ref|YP_059636.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS10394]
 gi|139474372|ref|YP_001129088.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes str.
           Manfredo]
 gi|59798145|sp|Q5XDR0|MURC_STRP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224740|sp|A2RGA7|MURC_STRPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50902738|gb|AAT86453.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS10394]
 gi|134272619|emb|CAM30886.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes str.
           Manfredo]
          Length = 442

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G  GK+S    +  + +    +S+ IG  +   S      +               
Sbjct: 105 FAVAGAHGKTSTTGLLSHVLKNITDTSYLIGDGTGRGSANAQYFVFESD----------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY        NA     +++
Sbjct: 154 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQV 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D   K++      A   +   G++ G       +    N     +  +
Sbjct: 198 ---KKALFVYGEDDELKKI-----EAPAPIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQ 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  P  G+  + NA          GID ALV +HL+    V  RF     N   
Sbjct: 250 GEVIGQFHVPAYGKHNILNATAVIANLFVAGIDMALVADHLKTFSGVKRRFTEKIINDTI 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   +   R    S  I+ +F                 AL+ AD   
Sbjct: 310 II--DDFAHHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY 367

Query: 415 V 415
           +
Sbjct: 368 L 368


>gi|293391930|ref|ZP_06636264.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952464|gb|EFE02583.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 457

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 86/274 (31%), Gaps = 22/274 (8%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+G DH D      A    +       +P     + +A +   ++ +     
Sbjct: 180 NPRTLIINNIGFDHADIFDDLNAIQR-QFHHMIRTIPNNGRILSFAGEESVQQTLAMGCW 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           + C+ +     GK          H+  +  +  +G+   +  + + GE  + N L+A   
Sbjct: 239 SECQYV-----GKDQEWYAERIKHDCTEFAVYHKGEKITEVHWNIVGEHNMRNGLMAIAA 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G+        L        R E V  N  G  +Y D+AH    ++  L  +R    
Sbjct: 294 ANHAGVSIENACATLGSFINAKRRLE-VKGNVHGITVYDDFAHHPTEIQATLTALRDKVG 352

Query: 382 GR--IIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHG 435
               I+ V          G        AL LAD   +         PE I    A+I   
Sbjct: 353 QNARILAVLEPRSNTMKMGVHKDEIAPALKLADAVFLFQ-------PETIPWKVADIAAQ 405

Query: 436 IPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
           +       + ++  +   +      D ++V   G
Sbjct: 406 LTQPAYDSDNLDTFVDLIVAETKPTDHILVMSNG 439


>gi|332854694|ref|ZP_08435481.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013150]
 gi|332865574|ref|ZP_08436414.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013113]
 gi|332727851|gb|EGJ59253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013150]
 gi|332735226|gb|EGJ66303.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013113]
          Length = 445

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 110/360 (30%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        ++ +
Sbjct: 89  QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFVVE 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 147 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 195 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALSAELISIDGSHF 251

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 252 KVLENGNVVGEVKWSMTGQHSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLG 311

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
               G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 312 M-INGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 371 LADEVI--WYQPEGLD-WDLQPVIEAATNHAQVSRSLDEIIERIVNEAGEGDAVVIMSNG 427


>gi|330443875|ref|YP_004376861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
 gi|328806985|gb|AEB41158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
          Length = 419

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 139/428 (32%), Gaps = 75/428 (17%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            VV S       +  I + +  + V+ + +  L    S  + ++P   + VTG++GK++ 
Sbjct: 61  FVVRSPGIPPTHAWVIEAKSRGISVETDIQVALK---SPEFQQYPS--IGVTGSNGKTTT 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVE 188
            SF+  +    GLS+  +G   T                        L  QGV+    VE
Sbjct: 116 VSFLTHLFHTLGLSAVSMGNIGTP----------------------ILELQGVSGIRVVE 153

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L           + +  N+ ++H+DYH T  AY  AK  +             Y 
Sbjct: 154 ISSFQLVDQEERIPVFSSAALLNVCQNHLDYHDTMDAYMMAKSHI-----------ANYV 202

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D  +  V +         +S+G   +    +    +                       
Sbjct: 203 QDPQTLWVGE--------GISLGKPYRAYFEETQEILDKASA-------------LKPIY 241

Query: 309 EFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                N   A  L   +  +     L  ++     P R E++G         V Y + S 
Sbjct: 242 LHDRSNYCAAYALAKEVCHVPLEGFLLAIQTFKKPPHRIEYLGKKHN-----VHYYNDSK 296

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  +       I  G  ++V   G ++      +   +    A   I        E  E+
Sbjct: 297 ATTVEAVKQALIALGSKVIVILGGRNKGGDFSALSF-VLSQTAKHVIAM-----GECREE 350

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           I   +  G+          EAI  A  + +  D ++++  G  +     N E++      
Sbjct: 351 IVQAV-AGVVPVCMAHKLEEAIEIAQALASAGDSILLS-PGCTSFDQFQNFEERGIFFKK 408

Query: 488 IIREILGL 495
           ++ E+  L
Sbjct: 409 LVGEMEAL 416


>gi|262377640|ref|ZP_06070860.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter lwoffii SH145]
 gi|262307399|gb|EEY88542.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter lwoffii SH145]
          Length = 454

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 116/362 (32%), Gaps = 29/362 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL    +     +     ++        +  +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLEPGFL--IGGVPLGFSESARLGGGKYFCVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           L    +P E   I    ++   EV+++       V+           L       +    
Sbjct: 207 LV-RTIPSEGRIIAPITESNIDEVLEQ--GCWTPVVRTSLDANEKAKLYAEQLSADGSHF 263

Query: 292 TISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  +G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLQQGVVKGEVQWNMTGQHSVANALATIAAAEHVGVSIETACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T  RG  +Y D+AH   +++  L+   + +   ++  +          G        +  
Sbjct: 324 T-VRGIEVYDDFAHHPTAIDTTLEGARKRLGERKLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--EAIRTAIEMLNKQDVLVVAG 466
           LAD  I     P   D +     +I   P   +   R   + I+T +    + D +V+  
Sbjct: 383 LADEVI--WYQPEGLDWD--LQPVIEAAPNKAKVA-RTLDDIIQTVVAEAGEGDAVVIMS 437

Query: 467 KG 468
            G
Sbjct: 438 NG 439


>gi|255320724|ref|ZP_05361901.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SK82]
 gi|262380645|ref|ZP_06073798.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SH164]
 gi|255302340|gb|EET81580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SK82]
 gi|262297593|gb|EEY85509.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SH164]
          Length = 454

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 116/361 (32%), Gaps = 27/361 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +      +        ++ +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSQSARLGGGKYFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           L    +P     I    + +  EV++        V+  G        L       +    
Sbjct: 207 LV-RTIPSTGRIIAPITETHIDEVLEM--GCWTPVIRTGLDTDTQAELYAELIQADGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +  +GK   +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLEQGKVIAEVQWSMTGQHSVANALATIAAAQHVGVSIVQACEALSSFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T  RG  +Y D+AH   ++E  L    + +   R+  V          G        +  
Sbjct: 324 T-LRGIEVYDDFAHHPTAIETTLDGARKRLGERRLWAVIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGK 467
           LAD  I     P   D +     ++   P   +   +  E I+  ++   + D +V+   
Sbjct: 383 LADEVI--WYQPEGLDWD--LQPVVEAAPNKSQVSRSLDEIIQRIVQEAGEGDAVVIMSN 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|225351421|ref|ZP_03742444.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157765|gb|EEG71048.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 480

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 122/376 (32%), Gaps = 57/376 (15%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TGT+GK+S      ++     L++  +G      S                   
Sbjct: 104 AQWIGITGTNGKTSTTEMTSEMLTACDLTAPAVGNIGKAVS------------------- 144

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +       + VE SS  L  H  D + L   + TN+  DH+D+H   + Y   K ++F
Sbjct: 145 HAVVDPANDVLCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIENYAADKAKVF 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQG--------KFIHLKKVCAI 285
             +   +   +  ADD     +   A  A  CR +              K   +  +  I
Sbjct: 203 HRV---KKALVYNADDERVTRLAFAAETAEGCRKVGFTLSEPQDGQIGVKDGWIVDMSGI 259

Query: 286 HNK-----QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                   +QV    E               + +AL A  L + +G D    +  LE+  
Sbjct: 260 AGGELGMPEQVAKVSEFTHLTEPDGTVYPHLLADALTALALVLGLGADKEKAIASLEQFT 319

Query: 341 VVPGRFEFVGTN--SRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               R + V T     GG I +VD +  +N+               + +    G  +   
Sbjct: 320 PGGHRIQTVATATTPDGGSIRFVDDSKATNAHAAKASLNSFADKSVVWI--AGGLAKGSR 377

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNR----IEAI 449
              ++ + +  +    ++       +D + I        P      I+  N       A+
Sbjct: 378 FEQLVAEQSHTIKAAVVI------GKDQQPILDAFAASAPDIPLTIIDPANNDVIMERAV 431

Query: 450 RTAIEMLNKQDVLVVA 465
             A E     DV+++A
Sbjct: 432 DAAGEYAQSGDVVLMA 447


>gi|255326226|ref|ZP_05367312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296680|gb|EET76011.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 528

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 129/419 (30%), Gaps = 60/419 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S                 I +  +      L  +   G      L +TGT+GK++  
Sbjct: 116 VVTSPGVRPDHQVMLDAYERRIQIWGDVELAWRL--NERSGLPTPKWLCLTGTNGKTTTV 173

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  + + +G  S Q+G       +                  +    +     +VE S
Sbjct: 174 GMVDSVLKAAGKKSIQVGNVGMPIVY------------------AIADDEPYEFFAVELS 215

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAII 246
           S  L  H    +   A    N+  DH+D+H + + Y   K R++E      +        
Sbjct: 216 SFQL--HWTHSMSPYASVVLNIAEDHVDWHGSFERYKADKARVYEHTQVACIFNTDHVDT 273

Query: 247 -----YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                 AD       +  +      V  +G     +  +        +   ++V      
Sbjct: 274 LRMVENADVIEGARAIGFSSTEMPAVSMLGLAEDIMVDRAFLKNRYNEAYELAVLEDLAP 333

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +P +  V NAL AA LC A  ID   V   L        R + VG  +    +   
Sbjct: 334 APGKMPAKHTVENALAAAALCRAADIDPKAVGAGLRSFKTGAHRNQLVGYANDIMWVNDS 393

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNP 420
            A   ++    +        G   +V+  GG  +      ++   A  L  + I+  D  
Sbjct: 394 KATNPHAANASMS-------GYPSLVWIAGGLSKGVEYDELIVAHAQRLKAVLIIGTDT- 445

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-----AIEM---------LNKQDVLVVA 465
                  +++ + +  P  +   N   A+       A+            +  D +++A
Sbjct: 446 -----AALKSALANHAPQ-VPTYNMTAAVADSSDGVAVMNAAVAKAAELAHPGDTVLMA 498


>gi|325287024|ref|YP_004262814.1| UDP-N-acetylmuramate--L-alanine ligase [Cellulophaga lytica DSM
           7489]
 gi|324322478|gb|ADY29943.1| UDP-N-acetylmuramate--L-alanine ligase [Cellulophaga lytica DSM
           7489]
          Length = 452

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 102/310 (32%), Gaps = 31/310 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSP 167
                 +  + + G+ GK+++ S +  +    G    + +G                   
Sbjct: 97  YEQSKNKTRVVIGGSHGKTTITSMILHVLNYHGREVDYMVGAQL--------------DG 142

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 L+  +   +       SS    + +    K      + +  DHI+   T + Y 
Sbjct: 143 FDRMVHLTEENDFIILEGDEYLSSPIDRRPKFHLYKPNIALLSGIAWDHINVFPTFENYV 202

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             + ++F + + K        +DA   +V++ + N   +            L      + 
Sbjct: 203 E-QFKIFVDSIVKGGSITYNEEDAEVVKVVEASENPIRK------------LAYSTPEYT 249

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +     +E  +      + G+  + N   A  +C  IGID     E +        R E
Sbjct: 250 IEDGETLLETPEGPMPIEVFGKHNLSNLAGAKWICQNIGIDEDDFYEAIATFKGASKRLE 309

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-- 405
            +   S+    Y D+AH+ + +    K ++     R ++ F             + +   
Sbjct: 310 KI-AESKTCVAYKDFAHSPSKVAATTKAVKEQYGNRKLIAFLELHTYSSFNPEFLKEYKG 368

Query: 406 ALDLADIAIV 415
           ALD AD A+V
Sbjct: 369 ALDAADEAVV 378


>gi|284045224|ref|YP_003395564.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Conexibacter woesei
           DSM 14684]
 gi|283949445|gb|ADB52189.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Conexibacter woesei
           DSM 14684]
          Length = 442

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 139/399 (34%), Gaps = 54/399 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S              +  + V+        L         P + +AVTGT+GK+
Sbjct: 69  ARTLVKSPGVPQDAPVVRAARDAGLAVIGEVELAWRLL--------PNDFIAVTGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  + + +GL     G   T             +   L  AL          +  
Sbjct: 121 TTTELLGHVHRTAGLPVTVAGNVGT-------------AVTTLIGAL-----DPAATIVC 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L+          A    N+  DH+D H T +AY  AK+  F             
Sbjct: 163 ETSSYQLEDTL--AFAPEAAILLNVTPDHLDRHGTLEAYREAKLEAFRR--------QTA 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFP 305
           A  A +   +  A     R ++ G             +      TIS EG          
Sbjct: 213 AGVAVTSTALAAALPGDARRVTFGAAADG------ATVALHDDGTISWEGAPLMAAAEIG 266

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG     NA+ AA + +A G+D+A V E L     V  R E +    R G  YV+ +  
Sbjct: 267 IPGPHNRENAMAAAAVALARGVDAAAVREALRSFGGVAHRLEPIAE--RDGVAYVNDSKA 324

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +N ++     +R+   G + ++   G  + Q   P+   +A   A + ++       E  
Sbjct: 325 TN-VDATQVALRSYAPGTVHLI-AGGVPKAQDFAPLAPLVAERCAAVYLI------GEGA 376

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +I A +        + G+   A+  A       +V+++
Sbjct: 377 GEIGAALASSGTPLHDVGDMERAVAAASAAARPGEVVLL 415


>gi|224372892|ref|YP_002607264.1| UDP-N-acetylmuramate--L-alanine ligase [Nautilia profundicola AmH]
 gi|223589642|gb|ACM93378.1| UDP-N-acetylmuramate--alanine ligase [Nautilia profundicola AmH]
          Length = 434

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 140/417 (33%), Gaps = 63/417 (15%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVV +A +  D    + +    +   + R+FL          + + +L+V G  GKS+ +
Sbjct: 62  IVVHTAVAKPDNPELVEAKKRGIKTFSRREFLPYVV------NDKKVLSVCGAHGKSTTS 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I  +           + I + ++D               S +   G  ++  E+ 
Sbjct: 116 SMLASILPK---------TNAIIGAESKDFG-------------SNMRYTGSDYLVFESD 153

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN   +H++Y+           R +EE L K    ++ ADD
Sbjct: 154 ESDGSFI---DSNPYIAIVTNTEPEHMEYYNHD---LKLFYRHYEEFLKKAKIRVVNADD 207

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            + K +         +             K +       +     E K++DF     GE 
Sbjct: 208 EFIKTLDFPMKKVSIK-----------DAKNIRYEIIDNKPKTVFEYKNYDFEVYGFGEH 256

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V +AL+A      + I    + ++++  H +  RF+ +  N     +  DY H    ++
Sbjct: 257 LVLDALLAIEAANEL-ITMEEIQKNIKNYHGIKKRFDILQ-NCENFILIDDYGHHPTEIK 314

Query: 371 MILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             L + +         ++ V++                   + AD  ++       E+P 
Sbjct: 315 ATLHSAKIFAKLNGIDKVSVIWQPHKYSRTIDNLDAFIECFNEADELVILPVWEAGEEPV 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEA-------IRT---AIEMLNKQDVLVVAGKGHETVH 473
            I  E +      I    RI+A       I      I+ +N+  +++  G G  T  
Sbjct: 375 DIDFETLFSKHRPIFAK-RIKADSNNIMLINENGNTIKEINEG-LVIGFGAGDITYQ 429


>gi|167038683|ref|YP_001661668.1| hypothetical protein Teth514_0008 [Thermoanaerobacter sp. X514]
 gi|289577273|ref|YP_003475900.1| hypothetical protein Thit_0008 [Thermoanaerobacter italicus Ab9]
 gi|300913757|ref|ZP_07131074.1| protein of unknown function DUF1727 [Thermoanaerobacter sp. X561]
 gi|307723226|ref|YP_003902977.1| hypothetical protein Thet_0008 [Thermoanaerobacter sp. X513]
 gi|166852923|gb|ABY91332.1| domain of unknown function DUF1727 [Thermoanaerobacter sp. X514]
 gi|289526986|gb|ADD01338.1| domain of unknown function DUF1727 [Thermoanaerobacter italicus
           Ab9]
 gi|300890442|gb|EFK85587.1| protein of unknown function DUF1727 [Thermoanaerobacter sp. X561]
 gi|307580287|gb|ADN53686.1| domain of unknown function DUF1727 [Thermoanaerobacter sp. X513]
          Length = 446

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 114/370 (30%), Gaps = 62/370 (16%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S    +L     E+ + +TGT+GK++ +  +  I   +G S       + + +      +
Sbjct: 36  SRLIKKLIEPLKESKVMITGTNGKTTTSGLIAHILNTAGKSVVHNKEGANMKTGIATALI 95

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            +         L  L  +       EA+   + +     I       TN  RD +D +  
Sbjct: 96  KSSD------FLGNLKKEAAVFEVDEANMPIVIED----INPNIVIITNFFRDQLDRYGE 145

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA---------------------- 260
                  K++     LP+ES  ++ AD+ ++  +                          
Sbjct: 146 LD-ITVEKVKNALLKLPQESIILLNADEPFTASIGDEIKSKVFYYGIDDNIEGINSSSFE 204

Query: 261 --------HNAGCRVLSVGYQGKFIH-------------LKKVCAIHNKQQVTISVEGKD 299
                   H    R +  G  G +                  +    +     +  + K 
Sbjct: 205 QKYCPICGHKYEYRRIYYGQLGDYYCPNCGKKRPNPHFKATNIFLNEDGINFNLYYKDKI 264

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F F   L G + VYN L A    I + ID   + +  E    + GR +     ++  +  
Sbjct: 265 FTFKSRLIGIYNVYNLLAAISASILLNIDFNTISKATENYWPIEGRLQKTKIKNK--KAI 322

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAI 414
           ++        E  L  +   +    +++       D      +  + L+          I
Sbjct: 323 INLIKNPIGFESTLNMLSQFSKPLNLLISINDNYADGRDVSWLWDVNLEDFLSKTKVNYI 382

Query: 415 VTDDNPRSED 424
           +T    R+ED
Sbjct: 383 ITS-GLRAED 391


>gi|331002502|ref|ZP_08326020.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410318|gb|EGG89752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 448

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 102/315 (32%), Gaps = 35/315 (11%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +   K    +  N+  DH++ H T + Y   K  + +         + 
Sbjct: 159 LETSSFQLE--TIIDFKPKISAILNITPDHLNRHHTMENYIKVKEDISKNQDENNFCILN 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----- 301
           Y D      + + A N   +V+    + K          +    + +  E          
Sbjct: 217 YED----VILREFAKNVKAKVVFFSSKTKLDK-----GFYLDNDIIVKAENGKVSKILDT 267

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G     N + A  +  + G+    +++     H V  R EFV     G + Y D
Sbjct: 268 NKLNILGRHNYENVMAAIAIAESYGVPMENIVKSCYDFHAVEHRIEFVK-EVNGVKYYND 326

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              T+   +  ++ +  + S   I+    G D+       +      +  + ++      
Sbjct: 327 SKGTNP--DAAIQAVLAMPSFTYII--AGGYDKGSEYDEWIESFGGKVKKLILMGATAKN 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV----AGKGHETVHIVTN 477
             D         HG        +  EA+          + +++    A  G     +  N
Sbjct: 383 IADCAN-----RHGFKDIDMVNSMEEAVNICAREAKSGEYVLLSPACASWG-----MFKN 432

Query: 478 GEKKMSVDCDIIREI 492
            E++  +  D ++E+
Sbjct: 433 YEERGRIFKDCVKEL 447


>gi|254253336|ref|ZP_04946654.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Burkholderia dolosa
           AUO158]
 gi|124895945|gb|EAY69825.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Burkholderia dolosa
           AUO158]
          Length = 508

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 157/466 (33%), Gaps = 70/466 (15%)

Query: 36  DSRHIQAGWIFVAIVGNKED----GHLFIPQAIAQGAEAIVVSSAYSLQDFSATI---RS 88
           D+R      +  A+     D    G  F P  +  G E + +S   S  +         +
Sbjct: 41  DTRDAPPN-L-AALQAEGIDAEFVGGPFAPALLDGGVEIVGLSPGLSPLEPELAALIAAA 98

Query: 89  NTPILVVDNTRKFLSL-FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           N   + V    +F +    S     +   +LA+TGT+GK++  S    +C+R+G      
Sbjct: 99  NERGIAVWGELEFFAQALRSLGTSGYQPKVLAITGTNGKTTTTSLAGLLCRRAGRKVAVA 158

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G    IS    D          L                +E SS  L+  R       A 
Sbjct: 159 G---NISPAMLDRLAAAIDDTALP-----------DVWVLELSSFQLETART--FAPDAA 202

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-KEVMKRAHNAGCR 266
           +  N+ +DH+D+H +  AY  AK R+F       +  ++  DDA   K           R
Sbjct: 203 AILNITQDHLDWHGSFDAYAAAKGRIFGA----TTTRVLNRDDAAVMKFAPAAGAADAPR 258

Query: 267 VLSVGY---------------------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            ++ G                      +          A   +++   +    D      
Sbjct: 259 TITFGLNEPTQDGDYGLSRDNGIAWLVEAVDRDAPDEAATTTRRRKRDAAHTPDIALKRL 318

Query: 306 LPGE-------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +P +           NAL A  L  AI + +A +L  L +      R E + T       
Sbjct: 319 MPADALRIRGLHNAANALSAFALARAIDLPAAPLLHALREYRGEAHRVEVIATIED--VD 376

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVD +  +N +   +  +  +      V+   G  + Q   P++  +A     + ++  D
Sbjct: 377 YVDDSKGTN-VGATVAALDGLAQKT--VLIAGGDGKGQDFAPLVAPVARWCRAVMLIGRD 433

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            P       IRA +       ++     +A+R A  +    D +++
Sbjct: 434 AP------AIRATLAETGVPLVDHPTLEDAVRAAAALAEPGDAVLL 473


>gi|255098853|gb|ACU00766.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bolletii]
          Length = 181

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 12/182 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+  DH+D+  + +AY  A    F E L  E   ++  DD  +  + +RAH 
Sbjct: 2   RPNLIVVTNIEADHLDHFGSAEAYS-AVFDEFAETLGSEGVLVVCLDDPGAAALARRAHE 60

Query: 263 AGCRVLSVGYQGKFIH--------LKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQV 312
            G RV   G  G+           L+            I + G+         +PG    
Sbjct: 61  RGIRVRGYGSAGQAEAGGVPVAGQLRDWQFKDTGATAQIQLAGESAPRTMRLSVPGRHMA 120

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A      IG     VL+ L     V  RFE VG +    R++ DYAH    +  +
Sbjct: 121 LNALAAVVAAAEIGASVDDVLDGLAGFEGVRRRFELVG-SVESVRVFDDYAHHPTEVRTV 179

Query: 373 LK 374
           L+
Sbjct: 180 LQ 181


>gi|329954168|ref|ZP_08295263.1| Mur ligase family, glutamate ligase domain protein [Bacteroides
           clarus YIT 12056]
 gi|328528145|gb|EGF55125.1| Mur ligase family, glutamate ligase domain protein [Bacteroides
           clarus YIT 12056]
          Length = 270

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 88/261 (33%), Gaps = 19/261 (7%)

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +D + T +AY  +  R +  L+      II    A   +V       G ++ +       
Sbjct: 1   MDIYGTCEAYLES-FRHYTTLIQPGGALIIRKGLALQPDV-----QPGVKIYTYSRDEGD 54

Query: 277 IHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            H + +   + +  +          D    +P    + N + A  L    G+    + + 
Sbjct: 55  FHAENIRIGNGEIFIDFVAPDTRINDIRLGVPIGINIENGVAAMALAHLNGVTDEEIKQG 114

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDR 394
           +     V  RF+F    +       DYAH    +   +K+IR +   + I  +F      
Sbjct: 115 MASFRGVDRRFDF-KIKTDKLVFLSDYAHHPAEIAQSVKSIRELYKDKKITAIFQPHLYT 173

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEA 448
                      +L L D  I+T+  P  E P        I   +  GI   I K    E 
Sbjct: 174 RTKDFYKDFADSLSLLDEVILTEIYPAREQPIPGVSSRLIYDNLRPGIEKCICK---KED 230

Query: 449 IRTAIEMLNKQDVLVVAGKGH 469
           I   +      +VL+V G G 
Sbjct: 231 IPALLAK-KPIEVLIVLGAGD 250


>gi|313890856|ref|ZP_07824480.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120754|gb|EFR43869.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 444

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 97/344 (28%), Gaps = 49/344 (14%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              + ++ +  I  N P        +FL  F  +           V G  GK+S    + 
Sbjct: 73  REDNNEELAYAIAQNIPF---KRYHEFLGEFMKQFI------SFGVAGAHGKTSTTGLLA 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + +    +S+ IG  +   S      +             Y                  
Sbjct: 124 HVLKNITNTSYLIGDGTGRGSANAQYFVFESDEYERHFMPYY------------------ 165

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                          TN+  DH DY    +  F+A     + +   +    +Y +D   K
Sbjct: 166 ---------PEYSIITNIDFDHPDYFTGIEDVFSAFNDYAKHV---QKALFVYGEDEELK 213

Query: 255 EVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQV 312
           ++   A      +   G++         +    N     +  + +    F  P  G   +
Sbjct: 214 KITSSAP-----IYYYGFEENNDFIAFDITRTTNGSDFKVKHDDQIIGQFHVPAYGRHNI 268

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA          G+D  LV +H+     V  RF     N        D+AH    +   
Sbjct: 269 LNATAVIANLYIAGVDMELVAKHMVTFSGVKRRFTEKIINDTIII--DDFAHHPTEIVAT 326

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           +   R    S  I+ +F                 AL+ AD   +
Sbjct: 327 IDAARQKYPSKEIVAIFQPHTFTRTIALLDEFAQALNEADSVYL 370


>gi|42526595|ref|NP_971693.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema denticola ATCC
           35405]
 gi|41816788|gb|AAS11574.1| UDP-N-acetylmuramate--alanine ligase [Treponema denticola ATCC
           35405]
          Length = 480

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 124/370 (33%), Gaps = 40/370 (10%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            + G  GK+S       I +   L    +   S I SF     +   S  ++A+   Y  
Sbjct: 119 GIAGVQGKTSTTGITGSILKELKLP-VSVLAGSVIKSFGDSCTMLNGSKYFVAETCEYKR 177

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                H                         T +  DH DY+ T ++   A ++  + L 
Sbjct: 178 HFLNFHPKKI-------------------ILTGIEPDHQDYYPTYESILTAFLQYIDRL- 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEG 297
           P+ S     ADD  + E  + + ++   ++ + Y  K     K+     + + +  S+ G
Sbjct: 218 PQFSELFYCADDDGACEAARLSFSSRPDLIFIPYGEKASGDYKLTVSGVRDEKLYFSLAG 277

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI------GIDSAL---VLEHLEKLHVVPGRFEF 348
              +F   +PG+    NA  A  L +++       I  A    + + +        R E 
Sbjct: 278 FSGEFYLQIPGKHNALNAAAAIALSVSLLKEEYGEISMANVSAIKKAVSSYAGAKRRTEL 337

Query: 349 VG-TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
           +G   S+   +Y DYAH   +++ +L  +R     R I+  F                  
Sbjct: 338 IGKVESKDILVYDDYAHHPTAIKSLLSGLRQFYPKRRIIADFMSHTYTRTEALLEEFASC 397

Query: 407 LDLADIAIV-------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            + AD+ I+        +      D E +                 ++A    +E L   
Sbjct: 398 FEDADMVILHKIFSSAREKYQGQVDAELLFNRTKKYHKNVFFFNEVLDAKNFVLEKLKPG 457

Query: 460 DVLVVAGKGH 469
           D+ +  G G 
Sbjct: 458 DIFITIGAGD 467


>gi|169797792|ref|YP_001715585.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AYE]
 gi|213155410|ref|YP_002317455.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB0057]
 gi|215485142|ref|YP_002327383.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB307-0294]
 gi|301345508|ref|ZP_07226249.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB056]
 gi|301512897|ref|ZP_07238134.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB058]
 gi|169150719|emb|CAM88629.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AYE]
 gi|213054570|gb|ACJ39472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB0057]
 gi|213988815|gb|ACJ59114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB307-0294]
          Length = 457

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 110/360 (30%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        ++ +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALSAELISIDGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGNVVGEVKWSMTGQHSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
               G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 324 M-INGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 383 LADEVI--WYQPEGLD-WDLQPVIEAATNHAQVSRSLDEIIERIVNEAGEGDAVVIMSNG 439


>gi|167630789|ref|YP_001681288.1| folylpolyglutamate synthase [Heliobacterium modesticaldum Ice1]
 gi|167593529|gb|ABZ85277.1| folylpolyglutamate synthase [Heliobacterium modesticaldum Ice1]
          Length = 459

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 118/397 (29%), Gaps = 51/397 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF--------QIGPTS 151
           + L         K P   + + GT+GK S +     + Q +G                 +
Sbjct: 34  ELLRRLGEPHRKKRPA-FIHIGGTNGKGSTSVMTAAVLQAAGHRVGLFTSPHLHCYTERT 92

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--------------- 196
            I+               L   L  + + G  H +       L                 
Sbjct: 93  RINGKPIPKETMAALIAELRPHLEAMVAGGFEHPTEFEVWTALSLLYFAREAVDVVVLEV 152

Query: 197 ------HRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYAD 249
                    + +  I    TN+  DH+DY   T       K  + +  +P  + +   A 
Sbjct: 153 GLGGSIDSTNVVTPIVACITNVSFDHMDYLGTTLPEIAAVKAGIVKAGVPLVTASDDAAV 212

Query: 250 DAYSKEVMKRAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A  +E  +R      +VL  G        +    V A      V     G       PL
Sbjct: 213 LAVLREKAQRLGAPIIQVLRQGPRLPSATPVRWYPVTARRAGILVEGRF-GIYGPLTPPL 271

Query: 307 PGEFQVYNALVAAGLCIAI---GIDS--ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            G  Q  N   A  +  A    G D     +   L ++    GR E +G         +D
Sbjct: 272 SGRHQQANLATAVAVLEAAKEKGFDWRADHLEAGLGQVSWP-GRLERIGP------FLLD 324

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-P 420
            AH       +   +R   +G+ + V G   D++   R  +  I   LA   IVT  N P
Sbjct: 325 GAHNVAGALSLAAALREEGAGKYVFVLGMLADKE---RERVVDILAPLAKAIIVTRPNSP 381

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           R+ + + + +             +  EA+  A     
Sbjct: 382 RAGEWQALASLAARRCDSVTVVSDIGEALEMARLSAQ 418


>gi|297180054|gb|ADI16279.1| UDP-n-acetylmuramate-alanine ligase [uncultured bacterium
           HF0010_16H03]
          Length = 435

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 95/274 (34%), Gaps = 34/274 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + AV+GT GK++ +  +  I    G     +     IS     +       I++ +A  Y
Sbjct: 103 VFAVSGTHGKTTTSYMLAHIFLDQGKDIGFL--VGGISDDISGSASLGTDKIFVIEADEY 160

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S+                               N+  DH D     +        L + 
Sbjct: 161 DSAFFDKRSKFIHY------------APSTLIINNIEFDHADIFDDLKDIKKQFHHLLKT 208

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TI 293
            +P     I ++DD  ++EV+                G +  L K+     K       I
Sbjct: 209 -IPPSGNIIYFSDDINAEEVINM--------------GNWSQLIKINDCEIKINFDSKEI 253

Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            + GK F     PL GE    N + A       G+     +  L+K + V  R EF G++
Sbjct: 254 KLLGKTFSLKNLPLIGEHNFKNYICAILAARTGGVAVEDSIISLQKFNGVKRRLEFKGSH 313

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           S   ++Y D+AH   +++   K IR     + I+
Sbjct: 314 SN-IKVYDDFAHHPTAIKASSKAIRNKFPEKKIL 346


>gi|225175499|ref|ZP_03729493.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168828|gb|EEG77628.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 454

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 121/320 (37%), Gaps = 17/320 (5%)

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           LS ++ +   + +V A             +    +  NL  DH+D H+T +AY  AK ++
Sbjct: 148 LSAVAVEDTKYEAVVAELSSFQLEATIDFRPQISAILNLTPDHMDRHKTMEAYVEAKEKI 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F          ++ ADD  +  +  R     CRV     + +      V   H   +   
Sbjct: 208 FANQ-KASDVTVLNADDPRTYALRGR---PRCRVYLFSRRRQVERGAFVRNGHVVVRDGE 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + E         +PG   + NAL AA L    G+   ++ + L+    V  R E V    
Sbjct: 264 NEETVCGVDEIRIPGAHNLENALAAALLAWLGGVAVEVIAKTLKNFPGVSHRLEHV--RE 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            GG  Y++ +  +NS +  +K +    + ++++    GG    G            A   
Sbjct: 322 FGGVTYINDSKGTNS-DAAIKALEAFAAPKLLI---AGGYDKGGDFSSFAAAIKKHARYV 377

Query: 414 IVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           ++       E   ++   +       +    +  +A++ A +     +V++++  G  + 
Sbjct: 378 VLL-----GEVAGRLAQALDEVDYHAYSTADSLEDAVKIASDTAQSGEVVLLS-PGCASW 431

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            +  + E++ +   + + E+
Sbjct: 432 DMFEDFEQRGNTFKEAVWEL 451


>gi|158522611|ref|YP_001530481.1| UDP-N-acetylmuramate [Desulfococcus oleovorans Hxd3]
 gi|158511437|gb|ABW68404.1| UDP-N-acetylmuramate [Desulfococcus oleovorans Hxd3]
          Length = 474

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 147/432 (34%), Gaps = 49/432 (11%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F  + +    + +VV +A S  +      +   +       + +  FA++        +L
Sbjct: 66  FAAENLDNRPDLVVVGNAVSKDNAEVVRLAEAGLAYCSMP-QAIQHFAAK-----DREVL 119

Query: 119 AVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            V GT GK++ +S +  +   +G   SF IG    +  F  + RL             ++
Sbjct: 120 LVCGTHGKTTASSLLAWMLYSAGLDPSFVIG--GVVKDFGGNYRLGKG---------RHM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  + +          H     +      T +  DH D      A      +    L
Sbjct: 169 VIEGDEYDTAFFDKRSKFFHY----RPKVAILTGVEFDHADIFADFGAVRKTFDKFIGGL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
           LP ES  + +  D   ++++K      C V   G +      L +V        V +   
Sbjct: 225 LP-ESLLLAFDSDPVVRDLVK---GRACNVKMYGNRDDSAWRLGRVTLQPPASVVEMICG 280

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              F  F   L G + + NAL AA    ++G+ +  + + L     V  R E  G     
Sbjct: 281 DAVFGTFETRLIGRYNLLNALAAAAAAHSVGVPAEEIKKALATFSGVRRRQEVRGVVRGV 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIA 413
                D+AH   ++   +  +R     GR+I VF    +             A DLAD+ 
Sbjct: 341 TV-MDDFAHHPTAVAATIAGVRPFYPEGRLIAVFEPRTNTSMRNVFQQDYAKAFDLADMV 399

Query: 414 IVTDDNPRSED-PEKIR--------AEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLV 463
            V    P  E  PE +R          I  G   +   G   +AI           DV++
Sbjct: 400 CV-SRVPLPEKVPEGMRFSSQQLADDLIKSGKEAYCFDG--ADAIVDFLKGRAAAGDVVL 456

Query: 464 VAGKG-----HE 470
           V   G     HE
Sbjct: 457 VMSNGGFDNIHE 468


>gi|16081726|ref|NP_394109.1| tetrahydrofolylpolyglutamate synthase related protein [Thermoplasma
           acidophilum DSM 1728]
 gi|10639804|emb|CAC11776.1| tetrahydrofolylpolyglutamate synthase related protein [Thermoplasma
           acidophilum]
          Length = 424

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 134/390 (34%), Gaps = 54/390 (13%)

Query: 113 HPENIL---AVTGTSGKSSVASFVQQICQR---SG--------------LSSFQIGPTST 152
           HPEN      +TG++GK S + F+  I ++   +G              + +  + P   
Sbjct: 32  HPENRFKSFHITGSNGKGSTSEFIYSILRQKFSAGIYTSPHLIKFNERIMVNDSMIPDDY 91

Query: 153 ISSFAQDNRLTTPS-----------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           I SF    R                 +    A  Y +   V + SVE    G      + 
Sbjct: 92  IDSFIGKYRPMIEDLAKINRNPTFFEVTTMMAFQYFADMKVDYASVEVGL-GGRLDATNI 150

Query: 202 IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           I  +    T +G +H D    +  +    K  +      KE   I+  D     EV+K  
Sbjct: 151 IMPLVSVITQVGYEHADKLGCSLTSIAYEKGGII-----KEGRPIVLQDQK--PEVVKTI 203

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +      S         ++ +                 +     L GE+Q  NA  A  
Sbjct: 204 KSISQVRGSPLIMLDPQKIRGLNLSEAGTSFDFEGMNGTYHLETDLIGEYQALNAATAVL 263

Query: 321 L--CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 IG++   +   ++      GR E +   SR   I +D AH   ++  +    R 
Sbjct: 264 AIEASGIGLEKNDIERGIKSARWP-GRLEII---SRDPLIIIDAAHNPPAVNKMANTFRK 319

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGI 436
           + + + ++V G   D+D         +   ++D  I T  ++  R+ DP+K+     H  
Sbjct: 320 VFTKKPLIVAGILSDKDS---YAYFHVIRQISDRIIFTTPEEKERAVDPKKLYDLYGHLF 376

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  + I+A+  A     + D ++V G
Sbjct: 377 SEARVIPDPIDAVNEA---AKRSDFVLVTG 403


>gi|32490957|ref|NP_871211.1| hypothetical protein WGLp208 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316007|sp|Q8D2Z4|MURD_WIGBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25166163|dbj|BAC24354.1| murD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 438

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 121/352 (34%), Gaps = 44/352 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I++S   SL   S  I     I ++ +   F               I+A+TG++GKS
Sbjct: 66  AKLIIISPGVSLYHPSLIIAKKLNIEIIGDIELFAREA--------SRPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S +  I   SGLS    G   T                    AL  L+ +      +
Sbjct: 118 TVTSMIGAIALNSGLSVGIGGNLGT-------------------PALDLLNEKSYQLYII 158

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +K IA S  N+  DH+D +      Y   K+++++         II
Sbjct: 159 ELSSFQLE--TTFNLKTIASSILNVTHDHMDRYPLGINQYRLIKLKIYKN----AKVKII 212

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD  +  V K   N    +    ++GK+   K              ++  +       
Sbjct: 213 NLDDYMTWPVHK---NKSVCIGFSSHKGKYCIKKHKKNNWMVVNNKFLLKCSEMKIS--- 266

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NALV+      + I   + L  L+    +P RF+ +   +    I    +   
Sbjct: 267 -GFHNYLNALVSLIFSDILKIPREISLNTLKNFSGLPHRFQIIHKKNNISWINDSKSTN- 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             +   +  + +I     I +   G  +     P+M  I      +     D
Sbjct: 325 --VSSTIAALSSIKIKGNIHLLLGGDSKKANLLPLMKIIRNKKIKLYCFGKD 374


>gi|298252630|ref|ZP_06976424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
 gi|297532994|gb|EFH71878.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
          Length = 538

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 76/466 (16%), Positives = 139/466 (29%), Gaps = 84/466 (18%)

Query: 54  EDGHLFIPQAIA-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
            D H F   AI     +A+V S  ++ +       ++  I ++        L        
Sbjct: 69  ADIHDF--SAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPIMSEVELAWRLRVPSQRTN 126

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   + VTGT+GK+S       +    GL++  +G                        
Sbjct: 127 KPAYWIGVTGTNGKTSTTEMTSAMLTACGLNAPAVGNIG-------------------KS 167

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K +
Sbjct: 168 VSHAALECEHDALCVELSSFQL--HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKSK 225

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQG--------KFIHLKKVC 283
           +F  +   +   +  A D    ++   A  A  C+ +    +         K   +    
Sbjct: 226 VFNNV---QKALVYNAQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVKDGWIVDNS 282

Query: 284 AIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +    + T+       E K             + +AL A  L + +  D    +  L +
Sbjct: 283 GVAGGTKGTLKPIVELRELKHLCEPDGSVYPHLLADALTALALALGLTGDVDSSVRALRE 342

Query: 339 LHVVPGRFEFVGT-------NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
                 R + V T        S   R   D   T+        ++ +  +    VV+  G
Sbjct: 343 FAPGGHRIQTVATLMSEDENPSHCIRFVDDSKATNA--HAACASLASFANNS--VVWIAG 398

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPR--SED--------PEKIRAEIIHGIPGFIE 441
           G    G    +    L +    +V   + R   E         P  I ++       +  
Sbjct: 399 GLAKGGHFEDLIANQLHVIKAVVVIGIDQRPIVEALHSSAPHIPVTIVSQDGSCAKSYDC 458

Query: 442 KGN----------------------RIEAIRTAIEMLNKQDVLVVA 465
             +                        + +  A       DV+++A
Sbjct: 459 VDDLVCEYIENTSLVNPDSSFGEAVMRQTVEAAGRYAKPGDVVLLA 504


>gi|297243802|ref|ZP_06927732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
 gi|296888223|gb|EFH26965.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
          Length = 533

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 142/466 (30%), Gaps = 84/466 (18%)

Query: 54  EDGHLFIPQAIA-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
            D H F   AI     +A+V S  ++ +       ++  I V+        L        
Sbjct: 64  ADIHDF--SAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPVMSEVELAWRLRVPSNRTN 121

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   + +TGT+GK+S       +    GL++  +G                        
Sbjct: 122 KPAYWIGITGTNGKTSTTEMTSAMLTTCGLNAPAVGNIG-------------------KS 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VE SS  L  H  D + L   + TN+  DH+D+H   +AY   K +
Sbjct: 163 VSHAALECEHDALCVELSSFQL--HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKSK 220

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSV----------GYQGKFIHLKK 281
           +F  +   +   +  A D    ++   A  A  C+ +            G +  +I    
Sbjct: 221 VFNNV---QKALVYNAQDERVSKLADCAQVADGCKKIGFTLGEPKDGEIGVKDGWIVDNS 277

Query: 282 VCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             A   K  +   VE ++   L           + +AL A  L + +  D    +  L +
Sbjct: 278 GVAGGTKGTLKPIVELRELKHLCEPDGSVYPHLLADALTALALSLGLTGDVDSSVRALRE 337

Query: 339 LHVVPGRFEFVGT-------NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
                 R + V T        S   R   D   T+        ++ +  +    VV+  G
Sbjct: 338 FTPGGHRIQTVATLMSEDENPSHCIRFVDDSKATNA--HAACASLASFANNS--VVWIAG 393

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPR--SED--------PEKIRAEIIHGIPGFIE 441
           G    G    +    L +    +V   + R   E         P  I ++       +  
Sbjct: 394 GLAKGGHFEDLIANQLHVIKAVVVIGIDQRPIVEALHSSAPHIPVTIVSQDGSCAKSYDC 453

Query: 442 KGN----------------------RIEAIRTAIEMLNKQDVLVVA 465
             +                        + +  A       DV+++A
Sbjct: 454 VDDLVCENIENTSLVNPDSSFGEAVMRQTVEAAGRYAKPGDVVLLA 499


>gi|158316854|ref|YP_001509362.1| UDP-N-acetylmuramate--alanine ligase [Frankia sp. EAN1pec]
 gi|158112259|gb|ABW14456.1| UDP-N-acetylmuramate--alanine ligase [Frankia sp. EAN1pec]
          Length = 499

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 130/439 (29%), Gaps = 65/439 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G E +VV+ A    D          + V+  +     L A           +AV G+ GK
Sbjct: 74  GVELVVVAPAVPGDDLELAEARRRELRVLTRSAALAGLMAGHRG-------VAVAGSHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++VA  +    Q  G       PT  +     +    T +       +      G     
Sbjct: 127 TTVAMMLTAALQACGAD-----PTFAVGGDPGEAGSHTHAGSSELMVVEADEDAGAFWQ- 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++      T +  +H+D+++T  A   A    F   +      + 
Sbjct: 181 ---------------LQPYGAVLTGVAAEHLDHYRTMPA-LAASFATFLRRVDPGGFLVA 224

Query: 247 YADDAYSKEVMKRAHNAGCRV-------------------LSVGY-QGKFIHLKKVCAIH 286
             DDA    +   A +   R                       G+     + L       
Sbjct: 225 CVDDAAGWALATAAADHADRWRRAGASASASAPDGGRPWLTGYGFGPSADVRLVAEEISI 284

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                 + V G         +PG   + +A  A    IA+G   A +L  L +   V  R
Sbjct: 285 AGTSAEVVVHGVRLGRLSLRVPGRHHLLDAAAALAAGIALGAPPAGLLAGLTEFAGVRRR 344

Query: 346 FEFVGTNSRGGRIYVDYAHTSN-SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           FE +G+   G R+  DYA+  +     +         GR++V F                
Sbjct: 345 FESLGSAG-GVRVVDDYANHPDRVAAAVEAARAAAGGGRVVVAFQPHLYSRTALLADRFG 403

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA------------ 452
            AL  AD  +V D     E PE   A              R+ A R              
Sbjct: 404 AALGSADAVVVMDVYGAGEQPEP-GAGGARVAAATRSGAARVGAARVVYEPSWSAVPGVL 462

Query: 453 IEMLNKQDVLVVAGKGHET 471
           +++    D+++  G G  T
Sbjct: 463 MDLARPGDLVMTLGAGDVT 481


>gi|71902948|ref|YP_279751.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes
           MGAS6180]
 gi|109892746|sp|Q48V60|MURC_STRPM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71802043|gb|AAX71396.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes
           MGAS6180]
          Length = 442

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 94/301 (31%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G  GK+S    +  + +    +S+ IG  +   S      +               
Sbjct: 105 FAVAGAHGKTSTTGLLSHVLKNITDTSYLIGDGTGRGSANAQYFVFESD----------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY        NA     +++
Sbjct: 154 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQV 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D   K++      A   +   G++ G       +    N     +  +
Sbjct: 198 ---KKALFVYGEDDELKKI-----EAPAPIYYYGFEEGNDFIAYDITRTTNGSDFKVKHQ 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  P  G+  + NA          GID+ALV +HL+    V  RF     N   
Sbjct: 250 GEVIGQFHVPAYGKHNILNATAVIANLFVAGIDTALVADHLKTFSGVKRRFTEKIINDTI 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   +   R    S  I+ +F                 AL+ AD   
Sbjct: 310 II--DDFAHHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY 367

Query: 415 V 415
           +
Sbjct: 368 L 368


>gi|296136985|ref|YP_003644227.1| UDP-N-acetylmuramate [Thiomonas intermedia K12]
 gi|295797107|gb|ADG31897.1| UDP-N-acetylmuramate [Thiomonas intermedia K12]
          Length = 498

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 107/351 (30%), Gaps = 51/351 (14%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS   +L    A + +  P +            A  +        LAV GT GK++  S
Sbjct: 70  VVSRGNAL--MEAILDAGQPYI------SGPQWLAEHVL--QGRWTLAVAGTHGKTTTTS 119

Query: 132 FVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAK----------------- 172
            +  I + +GL+   +  G      + A+     TP P    +                 
Sbjct: 120 MLAHILEVAGLNPGFLIGGVPLDFGASARLGGDKTPHPNPPRERGGSDLASSARGEGESP 179

Query: 173 ---ALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYF 227
              A   L   G   +  +         R   +  +       NL  DH D      A  
Sbjct: 180 SSTAWGRLGGGGFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI- 238

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             +       +P+    ++ A     + V+  A      V+               A   
Sbjct: 239 ETQFHHLVRTVPRSGQLVVNARSDALQRVL--ARGCWSEVVRFDDDENGW-----SAQGG 291

Query: 288 KQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +QQ  + + GK   +  +   G     NAL A       G+ +      L     V  R 
Sbjct: 292 EQQFEVRLRGKRVGEVRWSQTGAHNRSNALAAIAAAQHAGVFADEACAALCSFQGVRRRM 351

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGC 390
           E  G    G ++  D+AH   ++   +  +R          SGRI+ VF  
Sbjct: 352 ELRGAAG-GVQVIDDFAHHPTAIATTIAGLRHRMQADSHAASGRILAVFEP 401


>gi|163752944|ref|ZP_02160068.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Kordia algicida OT-1]
 gi|161326676|gb|EDP98001.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Kordia algicida OT-1]
          Length = 479

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 100/300 (33%), Gaps = 29/300 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G+ GK+++ S +  +      +   I     + +                  L+  
Sbjct: 134 VVIGGSHGKTTITSMILHVL-----NYHDIAVDYMVGA--------QLEGFDTMVHLTEE 180

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +   +       SS    + +    K      + +  DHI+   T + Y   + ++F + 
Sbjct: 181 NDFIILEGDEYLSSPIDRRPKFHLYKPNIALLSGIAWDHINVFPTYENYVE-QFQIFVDS 239

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + K        +DA    V++ + N   ++          +      I N Q + ++ +G
Sbjct: 240 ITKGGSINYNEEDAEVVRVVEASENPIRKL---------SYKTPEYIIENGQTLLLTPDG 290

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + G+  + N   A  +C  IG+D     E +        R E +        
Sbjct: 291 ---YMPIEVFGKHNLNNLAGAKWICQHIGVDEEDFYEAISTFKGASKRLEKIAEK-NSTV 346

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIV 415
           ++ D+AH+ + ++     ++       +                +   K ALD AD A+V
Sbjct: 347 VFKDFAHSPSKVKATTNAVKEQYQDRTVFACLELHTYSSLNAEFLKEYKGALDAADKAVV 406


>gi|299772109|ref|YP_003734135.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter sp. DR1]
 gi|298702197|gb|ADI92762.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter sp. DR1]
          Length = 457

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 111/364 (30%), Gaps = 33/364 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        +  +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFCVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALSAELISIDGSHF 263

Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGNAAGEVKWTMTGQHSVANALATIAAAQHVGVTLETACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 324 T-VNGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVV 464
           LAD  I          PE +  ++   I     +        E I   +    + D +V+
Sbjct: 383 LADDVI-------WYQPEGLDWDLQPVIAAASNRAQVSRSLDEIIERIVNEAGEGDAVVI 435

Query: 465 AGKG 468
              G
Sbjct: 436 MSNG 439


>gi|293376048|ref|ZP_06622301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sanguinis PC909]
 gi|292645349|gb|EFF63406.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sanguinis PC909]
          Length = 449

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 95/267 (35%), Gaps = 21/267 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +   +       N+   H+DYH     Y  AK+ L +     +       DD   + + +
Sbjct: 177 MPLFRPRISLLLNITEAHLDYHLNLDEYRQAKLNLIKNQTSDDYCVYNSEDDVIVEGIKQ 236

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                    LS   +G +I      A++ K++  I V+         L G+  + + L A
Sbjct: 237 TKATCIPFSLSEKVEGAYI---LEGAVYFKEEWIIDVKD------ILLKGDHNLQDVLGA 287

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + +  G D   +   L++   V  R +FVG   +G +    Y + S +  +I      
Sbjct: 288 VAVSLLYGCDLEAIRTVLKRFAGVKHRLQFVG-EIKGVK----YYNNSKATNIIATQTAL 342

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                 I++   G DR      + G +       +IVT      E   + +A     +  
Sbjct: 343 KAFDGPIILIAGGLDRG---HDLSGLVPYFNKIKSIVT----YGETKHRFKALADEHLMP 395

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                +  +A+  A E     D+++ A
Sbjct: 396 CTVYDHLDQAVEDAYEQAIAGDIVLFA 422


>gi|309792359|ref|ZP_07686827.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillochloris
           trichoides DG6]
 gi|308225580|gb|EFO79340.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillochloris
           trichoides DG6]
          Length = 457

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 105/310 (33%), Gaps = 17/310 (5%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L++    G+       TNL  DHI++H +  AY  AK ++F          + 
Sbjct: 160 LELSSFQLERLGAVGLSPRFSLITNLSGDHINWHGSFGAYAQAKTQIFAHQGADGVVVLP 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD   + ++   A     R+++            + A      + +            L
Sbjct: 220 AADVGPASQIWPLAGGYVGRMIAYDASPGATSAAHIDA---SGNLRLEAMTLAHCDDIHL 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NAL AA L  + GI    +   L     V  R E V      G +YV+    +
Sbjct: 277 AGLHNRSNALAAAALAYSFGISPGQIARALCSFVGVEHRLERV--RELAGVVYVNDTTAT 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           N    +       T    I++   G D++     +   IA  +  + ++      +  P 
Sbjct: 335 NPAATLAALEALTTP---IILIAGGADKELAFADLGAAIARRVKALVLLDG----TATPH 387

Query: 427 KIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
              A    G+              +AI  A  +    + ++++  G  +  +  N   + 
Sbjct: 388 VQAAVAQAGLLDPHAIHGPYAEFAQAIDVARGLAEPGETVLLS-PGCASFGMFRNEFHRG 446

Query: 483 SVDCDIIREI 492
                I++ +
Sbjct: 447 EEFRRIVQAL 456


>gi|254450302|ref|ZP_05063739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
 gi|198264708|gb|EDY88978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
          Length = 465

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 101/300 (33%), Gaps = 33/300 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
                  +  +    P  V ++   F   FA+  + +      ++AVTG++GKS+ ++ +
Sbjct: 81  PEPHPVIARALAEGCP--VDNDIGLFFRSFATSEWDEFDSIPKVIAVTGSNGKSTTSALI 138

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +G  +   G                         L    +     + +E SS+ 
Sbjct: 139 HHILEHAGRPAQLAGNIG-------------------RGVLDLDEAHDGEVIVLELSSYQ 179

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            D  R   +      FTNL  DH+D H     YF AK RLF E  P  +   +  D+   
Sbjct: 180 TDLAR--ALTPDVAVFTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPDRAVIGV--DEMEG 235

Query: 254 KEVMKRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VEGKDFDFLFPLP 307
           + +  +     +  RV+ V    K   +                   V   D   +  LP
Sbjct: 236 RYIANQLSEGPSDDRVIRVSAGQKIDGIGWSVFARKGFLSEYRKWRQVGSIDLRAISGLP 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA  A   C A+GI   ++   L     +P R + +        +    A   +
Sbjct: 296 GVHNHQNACAAYAACRALGIGPRVIEAALISFKGLPHRSQLIAEKVGVRYVNDSKATNVD 355


>gi|169634924|ref|YP_001708660.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii SDF]
 gi|169153716|emb|CAP02917.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii]
          Length = 457

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 111/360 (30%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        ++ +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALSAELISIDGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGNVIGEVKWSMTGQHSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 324 T-VNGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 383 LADEVI--WYQPEGLD-WDLQPVIEAATNHAQVSRSLDEIIDRIVNEAGEGDAVVIMSNG 439


>gi|171060647|ref|YP_001792996.1| UDP-N-acetylmuramate [Leptothrix cholodnii SP-6]
 gi|170778092|gb|ACB36231.1| UDP-N-acetylmuramate [Leptothrix cholodnii SP-6]
          Length = 480

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 128/388 (32%), Gaps = 39/388 (10%)

Query: 103 SLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQD 159
              A   L G+H   +LAV GT GK++  S +  I + +GL    +  G        A+ 
Sbjct: 93  QWLAEHVLQGRH---VLAVAGTHGKTTTTSMLAWILEAAGLQPGFLVGGVPQNFGVSARL 149

Query: 160 NRLTTPSPIYLAK---------ALSYLSSQGVTHVSV-EASSHGLDQHRLDGI--KLIAG 207
            R+  PS    ++             ++S G   V   +         R   +  +    
Sbjct: 150 GRIGRPSAAGPSQGASAPAGGSEAHAVASVGAPFVIEADEYDTAFFDKRSKFVHYRPRTA 209

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NL  DH D      A    +       +P +   ++   +   + V++R       V
Sbjct: 210 ILNNLEYDHADIFADLAAI-ETQFHHLVRTVPAKGRLVVNQREDSLRRVLER--GCWSEV 266

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G + +     +     +   V +    K     + L GE    NAL A      +G+
Sbjct: 267 HYFGARKETPGALRSRGEPHAFDV-LRGSLKVARVEWGLLGEHNQLNALAAIAAAEHVGV 325

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIV 386
             A     L +   V  R E  G  S G ++Y D+AH   ++   +  +R      RI+ 
Sbjct: 326 SPADAGAALGRFENVRRRLELRGEAS-GVKVYDDFAHHPTAIHTTVNGLRRKVGVARILA 384

Query: 387 VFGCG-GDRDQGKRPIMGKIALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPGFI 440
           VF         G        AL+ AD++      +  D   +  P   +A++   I   +
Sbjct: 385 VFEPRSNTMKLGTMASQLPWALEEADLSFCHSGGLGWDAAAALVPLGEQAQVHDSIERLV 444

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       +      D ++    G
Sbjct: 445 ---------AAVVRAARPGDHILCMSNG 463


>gi|332976264|gb|EGK13126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Desmospora sp. 8437]
          Length = 70

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 10 DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
          +   LI+ L++  +    + +I  +  DSR ++ G +F+A+ G   DGH FI QA+ +GA
Sbjct: 2  NLNTLIDSLAVAQITGNTDLEITGMEVDSRRVRPGDLFIALKGFTVDGHRFIRQAVEKGA 61

Query: 69 EAIVVSSA 76
           A+V+   
Sbjct: 62 RAVVLEEE 69


>gi|121595934|ref|YP_987830.1| UDP-N-acetylmuramate [Acidovorax sp. JS42]
 gi|120608014|gb|ABM43754.1| UDP-N-acetylmuramate [Acidovorax sp. JS42]
          Length = 474

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 101/324 (31%), Gaps = 26/324 (8%)

Query: 103 SLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQD 159
              A   L G+H   +LAV GT GK++  S +  I + +GL+   +  G        A+ 
Sbjct: 101 QWLAEHVLQGRH---VLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGVSARL 157

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                P       A + L                  + +    +       NL  DH D 
Sbjct: 158 GAPVRPLAGPGPLATAPLFVIEADEYDTAFFD---KRSKFVHYRPRTAVLNNLEFDHADI 214

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                        L    +P     ++   +     V+         V + G       +
Sbjct: 215 FDDLGQIERQFHHLV-RTVPPSGRVVVNGLEESLARVLHA--GCWSGVANFG-----TAV 266

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
               A        +   G+      + L G     NAL A      +G+  A   E L +
Sbjct: 267 SDFGAQGEPHDFEVLQRGRTVARVQWALTGVHNQLNALAAIAAAEHVGVTPAQAAEALAR 326

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCG- 391
              V  R E  GT  RG  +Y D+AH   +L   L  +R          GRI+ VF    
Sbjct: 327 FENVKRRMELRGT-VRGIAVYDDFAHHPTALRTTLDGLRRRVGPKGEGRGRILAVFEPRS 385

Query: 392 GDRDQGKRPIMGKIALDLADIAIV 415
                G        AL+ AD+A  
Sbjct: 386 NTMKLGTMKAQLPWALEPADLAFC 409


>gi|119944588|ref|YP_942268.1| UDP-N-acetylmuramate [Psychromonas ingrahamii 37]
 gi|119863192|gb|ABM02669.1| UDP-N-acetylmuramate [Psychromonas ingrahamii 37]
          Length = 452

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 117/359 (32%), Gaps = 33/359 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK+S AS +  I + + +    +     I    ++  L+           
Sbjct: 103 RWVLAVAGTHGKTSTASMLAWILEYANMKPGFL-----IGGVPENFGLS----------- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + L       +  +         R   +          NL  DH D  +   A       
Sbjct: 147 ARLGETPFFVIEADEYDSAFFDKRSKFVHYHPRTLVLNNLEFDHADIFEDLNAIKKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P      I   D    +V +           V Y GK    KK+    +   V 
Sbjct: 207 LV-RTVPATGRIFIPDQDQALIDVQRMG-----CWSEVEYLGKNWSCKKIKEDASIFDVY 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ + K     + L G+  V NAL A      +G+   + +E L +   +  R E V   
Sbjct: 261 LN-QQKQGQVAWSLMGDHNVNNALAAIAAARHVGVTPEIAIEALAEFKNIKRRME-VKGK 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLA 410
                +Y D+AH   +++  L  +R       I+            G        AL  A
Sbjct: 319 VNSITVYDDFAHHPTAIKTTLAGLRAKVGNEKIIAVLEPRSNTMKLGVHKEALVNALAAA 378

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
           D     +    +ED +    E+       ++  + I+ +    + +  +   +++   G
Sbjct: 379 DSVYCFE----TEDIKWSIEELFAEQGKAVDISHDIDELCTKLVSIAERNAHILIMSNG 433


>gi|89890111|ref|ZP_01201622.1| UDP-N-acetylmuramate-alanine ligase [Flavobacteria bacterium BBFL7]
 gi|89518384|gb|EAS21040.1| UDP-N-acetylmuramate-alanine ligase [Flavobacteria bacterium BBFL7]
          Length = 450

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 112/348 (32%), Gaps = 33/348 (9%)

Query: 73  VSSAYSLQDFSATIRSNTP-ILVVDNT-RKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++           +++ P +L   +   K  S           +  + + G+ GK+++ 
Sbjct: 59  INADLDAVILGMHAKADNPELLKAQDLGLKIYSYPEYLYEQSKNKTRVVIGGSHGKTTIT 118

Query: 131 SFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S +  +         + +G                         L+  +   +       
Sbjct: 119 SMILHVMHYHDRKVDYMVGAQL--------------EGFETMVHLTDDNEFMILEGDEYL 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS    + +    +      + +  DHI+   T + Y +     F E +   S  +   D
Sbjct: 165 SSPIDRRPKFHLYQPNIALISGIAWDHINVFPTWENYLSQFSE-FVECMRDGSILVYNED 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   K + + A     +           H   + A       T  +E  + D    + G+
Sbjct: 224 DEAVKTIAEAATKPTRK-----------HAYSIPAHSIINGTTY-LETPEGDMPIEIFGK 271

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N   A  +C  +GID     E +        R E + T S    IY D+AH+ + +
Sbjct: 272 HNLSNLAGAKWICQHMGIDEDDFYEAIASFKGASKRLEKI-TESENCVIYKDFAHSPSKV 330

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI-MGKIALDLADIAIV 415
           +   + +    +  ++I               +   K  LD AD+A+V
Sbjct: 331 QATTRAVHNQYSERKLIACLELHTYSSLNPEFLAQYKNTLDAADVAVV 378


>gi|306827968|ref|ZP_07461235.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes ATCC
           10782]
 gi|304429887|gb|EFM32929.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes ATCC
           10782]
          Length = 442

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            AV G  GK+S    +  + +    +S+ IG  +   S      +               
Sbjct: 105 FAVAGAHGKTSTTGLLSHVLKNITDTSYLIGDGTGRGSANAQYFVFESD----------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H +  H            TN+  DH DY        NA     +++
Sbjct: 154 ----------EYERHFMPYH------PEYSIITNIDFDHPDYFTGIADVRNAFNDYAKQV 197

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +    +Y +D   K++      A   +   G++ G       +    N     +  +
Sbjct: 198 ---KKALFVYGEDDELKKI-----EAPAPIYYYGFEKGNDFIAYDITRTTNGSDFKVIHQ 249

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  P  G+  + NA          GID ALV +HL+    V  RF     N   
Sbjct: 250 GEVIGQFHVPAYGKHNILNATAVIANLFVAGIDMALVADHLKTFSGVKRRFTEKIINDTI 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                D+AH    +   +   R    S  I+ +F                 AL+ AD   
Sbjct: 310 II--DDFAHHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLEDFACALNEADSVY 367

Query: 415 V 415
           +
Sbjct: 368 L 368


>gi|260558074|ref|ZP_05830285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii ATCC 19606]
 gi|260408428|gb|EEX01735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii ATCC 19606]
 gi|322506212|gb|ADX01666.1| L-alanyl-gamma-D- glutamyl-meso- diaminopimelate ligase
           (UDP-N-acetylmuramate) [Acinetobacter baumannii 1656-2]
          Length = 457

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 111/360 (30%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        ++ +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALSAELISIDGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGNVVGEVKWSMTGQHSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 324 T-INGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 383 LADEVI--WYQPEGLD-WDLQPVIEAATNHAQVSRSLDEIIDRIVNEAGEGDAVVIMSNG 439


>gi|301155957|emb|CBW15427.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 451

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 88/269 (32%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D      A    +       +P     + +AD+   KE +     +  + 
Sbjct: 183 IINNISFDHADIFDDLHAIQR-QFHHMIRTIPSTGRVLSFADEQSVKETLNMGCWSEQQF 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     GK          ++  +  +   GK   +  + + G+  ++NAL+A       G
Sbjct: 242 I-----GKDKEWFAERITNDCSEFAVFHHGKKVAEVKWNIVGQHNMHNALMAIVAAYHAG 296

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           I      + L        R E V     G  +Y D+AH   ++   L  +R    G  RI
Sbjct: 297 IKIEDACQALGSFINAKRRLE-VKGEVNGITVYDDFAHHPEAILATLTALRDKVGGGVRI 355

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEII-HGIPGF 439
           + V          G        AL  AD   +         P+ I    AEI    +   
Sbjct: 356 LAVLEPRSNTMKMGVHKDEIAPALGRADAVFMLQ-------PDNIPWDVAEIAGQCVQPA 408

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              G+  + +   +     +D ++V   G
Sbjct: 409 HYTGSVDKLVDMIVAEAKPRDQILVMSNG 437


>gi|257125000|ref|YP_003163114.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
 gi|257048939|gb|ACV38123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
          Length = 459

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 130/342 (38%), Gaps = 50/342 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I++ TGT+GK++ ++ + ++   SG  +   G                      + A  
Sbjct: 92  KIISFTGTNGKTTTSTKMAELLNFSGFRAKLAGNAG------------------FSFAKL 133

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + + ++ +E SS+ L+ +    I        NL  DH+  + + + Y+  K  +F+
Sbjct: 134 VADEEKLDYIVLELSSYQLENN--PQIHSNIAGIINLTPDHLTRYNSVEDYYITKFNIFD 191

Query: 236 ELLPKESPAIIYADDAYSKEVMKR-----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + + +   A+I  DD   +++ +R        +    LS   +G     K    I    +
Sbjct: 192 KQV-ESDFALINLDDKEFEKLYERNEIKEKIKSKKIYLSTETKGTIFVYKNDICIMKDFK 250

Query: 291 VTIS-VEGKDFDF-----------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             I  +E  D +               L G+  + N L   G    + I +  + E L+ 
Sbjct: 251 KRIDEIENFDENVDKVSEILMKTDELSLKGKHNLENMLFLIGSAKILNISNEKISEFLKS 310

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +  R E      +G  I+++ +  +N +E  LK I +  +   I++   G D+    
Sbjct: 311 TVALEHRLENFFI--KGNTIFINDSKGTN-VESTLKAIDSFDN--SIIMILGGDDKKIDN 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
            P++ +I    AD   +  DN      + +  ++   G   +
Sbjct: 366 MPLIERIKEK-ADFVYLIGDNA-----QILIDDMEKIGYKNY 401


>gi|148284827|ref|YP_001248917.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Orientia
           tsutsugamushi str. Boryong]
 gi|146740266|emb|CAM80615.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 472

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 118/364 (32%), Gaps = 51/364 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    + +TGT+GKS+ ++ +  I               T ++   D        +
Sbjct: 107 YNEYPNRKYIGITGTNGKSTTSTLIHHIL--------------TFTNGKFDIGGNIGKAV 152

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
              +         V    +E SS  LD   +  +KL      N+  DHID + +   Y  
Sbjct: 153 LSLR-------DNVEGYVLELSSFQLDL--ITDLKLDVAVLLNITADHIDRYYSFDQYIL 203

Query: 229 AKMRLFEELLPKESPAIIYADDA------YSKEVMKRAHNAGC------RVLSVGYQGKF 276
           +K ++   L  K   A+I  + +      Y+     +  N  C      + ++     K 
Sbjct: 204 SKQKILS-LATKNGYALINKECSIISNANYNTLYASKFRNTTCSLELIKKAINTDELNKS 262

Query: 277 IHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           I  + +        V  S    +  +F   L G+    N   A   C  +G +   +   
Sbjct: 263 IADESINCQSQPTLVKFSSHIPQHINFTSLLLGKHNNQNIAAAFYACKILGRNEYDITSA 322

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           + +   +P R +++G  +    IY D   T+   +   K + ++++   I     G  ++
Sbjct: 323 INQFQPLPHRMQYIGKKNN-IHIYNDSKATNA--DAASKALLSLSNIYWIA---GGVAKE 376

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
            G   I+  +                        AE + G+  F       EA   AI  
Sbjct: 377 GGVNSIVNTLYEVKKAYLYGQSRYA--------LAETLKGVVAFSINNTMEEAFNQAIID 428

Query: 456 LNKQ 459
               
Sbjct: 429 AESD 432


>gi|332873288|ref|ZP_08441243.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6014059]
 gi|332738494|gb|EGJ69366.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6014059]
          Length = 445

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 111/360 (30%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        ++ +
Sbjct: 89  QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFVVE 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 147 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 194

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 195 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKATLSAELISIDGSHF 251

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 252 KVLENGNVVGEVKWSMTGQHSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLG 311

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 312 T-INGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 371 LADEVI--WYQPEGLD-WDLQPVIEAATNHAQVSRSLDEIIDRIVNEAGEGDAVVIMSNG 427


>gi|165975474|ref|YP_001651067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|303251838|ref|ZP_07338009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307249139|ref|ZP_07531146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|165875575|gb|ABY68623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649268|gb|EFL79453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854427|gb|EFM86623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 436

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 137/395 (34%), Gaps = 58/395 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +L         N  + VV +   F+              I+A+TG +GKS+V 
Sbjct: 70  IVISPGLALATPEIQQAINAGVEVVGDIELFVREA--------KAPIIAITGANGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +++G+     G                         LS L+ +      +E S
Sbjct: 122 TLVTEMAKQAGIKVGMGGNIGV-------------------PVLSLLNDE-YELFVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++         I+  +
Sbjct: 162 SFQLE--TTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN----VIVNGE 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +  +  +A     R      +    +  +   +++     I  +         + G 
Sbjct: 216 DRLTYPLETQAVKKLIRF----AEHNAEYTMRNGILYSGDDAIIPTK------EMLISGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N+L A  L  A GI    +++ L+    +  RF+ V TN     +    A    S 
Sbjct: 266 HNEMNSLAAMALAEAAGIPREGIVKALQVYGGLNHRFQAVKTNDGVRWVNDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++   +G + ++   G  +      +   I            D           
Sbjct: 326 VAALNGLQ--VAGTLYLLL-GGDGKAADFSELKPLINKPNIVCYCFGQDG---------- 372

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A++       +      +AI      L K D++++
Sbjct: 373 AQLAALSSQSVLVETMQQAIEQIRPQLKKGDMVLL 407


>gi|297583946|ref|YP_003699726.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297142403|gb|ADH99160.1| cytoplasmic peptidoglycan synthetase domain protein [Bacillus
           selenitireducens MLS10]
          Length = 451

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 69/446 (15%), Positives = 134/446 (30%), Gaps = 64/446 (14%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V ++  +I  G +FV + G   DGH  I  A+  GA A +       +    T+    
Sbjct: 28  HGVQTNPENIVTGDLFVPLKGEMFDGHQLIEAAVENGAAASLW---RISEPVPKTLDRTF 84

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+  V++  + +   A +         +AVTG   +    + +  + +++          
Sbjct: 85  PLFFVEDPERAVEEMAEQYLFDIDPTRVAVTGDYTRHLTRTVLAGMLKKNYRVYLPEETL 144

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                F                         V    V + +  + +   + I        
Sbjct: 145 GEPLPFFSSVLSMPDDT-------------DVILFDVPSRTDDIVRSASELIIPQLAVL- 190

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                H D H   +A         E  + K     +            +  +    ++  
Sbjct: 191 ---CCHRDQH---EADIAGHAVHIEAGMKKTGTVFV-------DRNRWQDVDWQTDLVEY 237

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G     +   +     +  +V  S++G  F DF  P   +  + + L A G  I +G+ +
Sbjct: 238 GEDSDSLFYPEQVREEDG-RVLFSIKGIMFLDFSLPWLMKDHIMSVLAALGPAIHLGMGA 296

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V + + +L +    FE   +   G  + VD+              R + SG    +  
Sbjct: 297 ESVAQGVSELTMEDFDFETCHSK-DGTVVLVDH-------------GRGLKSGLKYSLGM 342

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIE 447
                   +R ++                NP  E    E    E+   I   I  G +  
Sbjct: 343 LKHMHHFDRRVLIVDEGFQS---------NPLKEKIIHEVFADELRDPITDLITIGEKAF 393

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVH 473
            IR+A+         +    GH    
Sbjct: 394 WIRSALNNAG-----ITLNGGH--YQ 412


>gi|325473131|gb|EGC76327.1| UDP-N-acetylmuramate-alanine ligase [Treponema denticola F0402]
          Length = 480

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 123/370 (33%), Gaps = 40/370 (10%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            + G  GK+S       I +   L    +   S I SF     +   S  ++A+   Y  
Sbjct: 119 GIAGVQGKTSTTGITGSILKELKLP-VSVLAGSVIKSFGDSCTMLNGSKYFVAETCEYKR 177

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                H                         T +  DH DY+ T ++   A ++  + L 
Sbjct: 178 HFLNFHPKKI-------------------ILTGIEPDHQDYYPTYESILTAFLQYIDRL- 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEG 297
           P+ S     ADD  + E  + + ++   ++ + Y  K     K+     + + +  S+ G
Sbjct: 218 PQFSELFYCADDDGACEAARLSFSSRPDLIFIPYGEKASGDYKLTVSGVRDEKLYFSLAG 277

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI------GIDSAL---VLEHLEKLHVVPGRFEF 348
              +F   +PG+    NA  A  L +++       I  A    + + +        R E 
Sbjct: 278 FSGEFYLQIPGKHNALNAAAAIALSVSLLKEEYGEISMANVSAIKKAVSSYAGAKRRTEL 337

Query: 349 VG-TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
           +G   S+   +Y DYAH   +++ +L  +R     R I+  F                  
Sbjct: 338 IGKIESKDILVYDDYAHHPTAIKSLLSGLRQFYPKRRIIADFMSHTYTRTEALLEEFASC 397

Query: 407 LDLADIAIV-------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
              AD+ I+        +      D E +                 ++A    +E L   
Sbjct: 398 FGDADMVILHKIFSSAREKYQGQVDAELLFNHTKKYHKNVFFFNEVLDAKNFVLEKLKPG 457

Query: 460 DVLVVAGKGH 469
           D+ +  G G 
Sbjct: 458 DIFITIGAGD 467


>gi|325123476|gb|ADY82999.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 457

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 111/358 (31%), Gaps = 21/358 (5%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        +  +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFCVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L    +P E   I    + +  EV++          S+    K     ++ +I       
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKV 265

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + + G+  V NAL        +G+      E L     V  R E +GT 
Sbjct: 266 LENSNVVGEVKWSMTGQHSVANALATIAAAQHVGVTLEQACEALSNFGGVKRRMELLGT- 324

Query: 353 SRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
             G  +Y D+AH   +++  L    + +   R+  +          G        +  LA
Sbjct: 325 VNGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLA 384

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 385 DEVI--WYQPEGLD-WDLQPVIAAASNRAQVSRSLDEIIERIVNEAGEGDAVVIMSNG 439


>gi|262281543|ref|ZP_06059322.1| hypothetical protein HMPREF0012_03490 [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257002|gb|EEY75741.1| hypothetical protein HMPREF0012_03490 [Acinetobacter calcoaceticus
           RUH2202]
          Length = 457

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 111/361 (30%), Gaps = 27/361 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        +  +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFCVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALTAELISIDGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGNVVGEVKWSMTGQHSVANALATIAAAQHVGVALEQACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 324 T-VNGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGK 467
           LAD  I     P   D +     +I       +   +  E I   +    + D +V+   
Sbjct: 383 LADDVI--WYQPEGLDWD--LQPVIEAASNHAQVSRSLDEIIERIVNEAGEGDAVVIMSN 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|329121232|ref|ZP_08249859.1| tetrahydrofolate synthase [Dialister micraerophilus DSM 19965]
 gi|327470166|gb|EGF15629.1| tetrahydrofolate synthase [Dialister micraerophilus DSM 19965]
          Length = 437

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 131/389 (33%), Gaps = 50/389 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------------------- 155
            ++ VTGT+GK SV + + +I + SG+ + +      I                      
Sbjct: 44  KVIHVTGTNGKGSVVAMITKILELSGIKTGRFTSPHLIEYTERFYSCGAYISKEKFAEMY 103

Query: 156 --------FAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                     ++     P+   +  A++  Y   + V +  VE    GL     + ++  
Sbjct: 104 EKVQKAVQIMKEEGHEQPTEFEMLTAMAFLYFKEENVEYTVVEVGMGGL-LDSTNVVEPE 162

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+  DH+   +       +       ++ ++ P +  A +     + K A     
Sbjct: 163 ISVITNVAMDHM---KILGKDIKSIAEQKAGIIKEKKPVVTSATNEALSIISKEAEKKHS 219

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQVYNALVAAG 320
           ++       K   +  V   +  Q + +  + K+          PL G++Q  NA +A  
Sbjct: 220 KIYVY---NKDFAVDSVEVKNKGQMIKLKTDIKEISEKEQTIEIPLNGKYQSINAAIAWT 276

Query: 321 LCIAIGIDSALVLEH--LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-R 377
               +      +     L+    V     F      G  I +D AH     + + + + +
Sbjct: 277 TVKLLENKEKRITNESILKGFLSVIWHGRFEIFEIDGNTIILDGAHNFAGAKTLNETLNQ 336

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
              + + +V+F    D++  K   +     D            R+ D  K   +      
Sbjct: 337 KYKNKKRLVIFSSLKDKETQKILKLIVRENDTVFFVEAPTKRTRTFDELKKMTD-----S 391

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              E  N   A+  A+++  K +V++V G
Sbjct: 392 KHFEMPNVKTALDKALKISGKDNVIIVCG 420


>gi|254303962|ref|ZP_04971320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324154|gb|EDK89404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 432

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 136/379 (35%), Gaps = 38/379 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TGT+GKS+  + +  +   +G  +   G                     L++ L 
Sbjct: 92  KIIAITGTNGKSTTTAKISDMLNHAGYKAAYAGNIG----------------RSLSEVL- 134

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  + +  +S+E SS  L+   ++  K       N+G DHI+ +++   Y++ K  + +
Sbjct: 135 -LKEKDLDFISLELSSFQLEN--VENFKPYISMIINMGPDHIERYKSFDEYYDTKFNIVK 191

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++   I   DD    E+ KRA     + +SV    K     K   I + +   I V
Sbjct: 192 NQT-EDLYFIENIDDV---EIEKRAKQIKAKRISVSKFKKADIFVKNDKICHGENTIIDV 247

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +         L G   + N L        + ID   + E L     +  R E      + 
Sbjct: 248 D------KLSLKGIHNLENTLFMVATAEILKIDKEKLKEFLMIATPLEHRTELFFNYGKL 301

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I    A   +S          I + +  ++   G D+     P+   I  ++ ++ ++
Sbjct: 302 KFINDSKATNVDS------TKFAIQANKNSILICGGYDKGVDLAPLAEMIKENIKEVYLI 355

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                + E   K        I   +   N ++ ++         D +++      +    
Sbjct: 356 GVIADKIESELKKIGYEDSKIHKLVNIENSLQDMKK--RFTKDSDEVILLSPATSSYDQF 413

Query: 476 TNGEKKMSVDCDIIREILG 494
            + E +  V  +++ +I G
Sbjct: 414 NSFEHRGKVFKELVLKIFG 432


>gi|52425669|ref|YP_088806.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307721|gb|AAU38221.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 453

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 108/342 (31%), Gaps = 30/342 (8%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++GL+   +     I+     +   T SP ++ +A  Y ++           +
Sbjct: 121 MLTWILEQNGLNPGFL--IGGIAGNFGMSSRFTDSPYFVIEADEYDTAFFDKRSKFVHYN 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                              N+G DH D     +A    +       +P     +  A + 
Sbjct: 179 ------------PKTLIINNIGFDHADIFDDLKAIQR-QFHHMIRTIPASGRILSVATEQ 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             KE +     +  + L    +     +   C+          +  K  +  + + G+  
Sbjct: 226 SVKETLDMGCWSEKQFLGKEQEWNAERITNDCSRF----AVFHLGEKVAEVHWDIVGQHN 281

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           ++NAL+A       G+        L        R E  G    G  +Y D+AH    ++ 
Sbjct: 282 MHNALMAIAAAYHAGVKIEDACRALATFVNAKRRLEVKGEVG-GVTVYDDFAHHPAEIQA 340

Query: 372 ILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            L  +R  +  G  I+                 +IA      A+V  D      P+ I  
Sbjct: 341 TLTALRDKVGGGVRILAVLEPRSNTMKMGVHKDEIA-----PALVRSDYVFLLQPDNIPW 395

Query: 431 EIIHGIPGFIE----KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E++      ++      +  + +   ++     D ++V   G
Sbjct: 396 EVVEIANKCVQPTKWTADLDKLVDFVVQEAQPTDHILVMSNG 437


>gi|170729465|ref|YP_001774898.1| UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa M12]
 gi|167964258|gb|ACA11268.1| UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa M12]
          Length = 473

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 126/367 (34%), Gaps = 19/367 (5%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++P+ IA     +VV +A S  + +     ++    +          A R+      + L
Sbjct: 54  YLPEHIAADCAEVVVGNALSRGNAAVEALLDSGCRYISGP----QWLAERVL--PGRDTL 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           AV GT GK++  + +  + + +G +   +  G       S      L+  S   L     
Sbjct: 108 AVAGTHGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAGEV 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             + + +  V  +         R   +  +       NL  DH D      A       L
Sbjct: 168 SAAVRPLFVVEADEYDTAFFDKRSKFVHYRPRVAILNNLEYDHADIFPDVAAIQRQFHHL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               +P     I+  +D    EV+  A      V   G+  +F    ++ A     + ++
Sbjct: 228 V-RTIPGRGRLIVNGEDQRLAEVL--AMGCWTPVERFGFDPEFHWSARLIAAD-GSRFSV 283

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG +     + L G   V N L A     A+G+  A V+  L +   V  R E +G  
Sbjct: 284 WHEGCEVGQVRWSLLGRHNVLNVLAALAAAHAVGVAPAAVIPSLTQFRSVKRRLECLGER 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLA 410
                +Y D+AH   ++   L+ +R       IVV                 +A  L  A
Sbjct: 344 G-AVTVYDDFAHHPTAIATTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAPSLQAA 402

Query: 411 DIAIVTD 417
           D  +  D
Sbjct: 403 DTVVFLD 409


>gi|113461392|ref|YP_719461.1| UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl-medo-
           diaminopimelate [Haemophilus somnus 129PT]
 gi|112823435|gb|ABI25524.1| UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl-medo-
           diaminopimelate [Haemophilus somnus 129PT]
          Length = 458

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 86/265 (32%), Gaps = 14/265 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NLG DH D     QA    +       +PK    + +A +   KE +     +    
Sbjct: 185 IINNLGFDHADIFDNLQAIQR-QFHHMIRTMPKSGRILAFAHEQSVKETLDMGCWSEMHF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L     G+          H+     +  +GK   +  + + G+  + NAL+A      +G
Sbjct: 244 L-----GQDQEWHTERIAHDSSHFAVYHQGKKAGEVQWNIVGQHNMNNALMAIAAAYHVG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +      + L        R E V     G  +Y D+AH    +   L  +R    G  RI
Sbjct: 299 VQVKDACQALYSFVNAKRRLE-VKGEVNGVTVYDDFAHHPAEILATLTALRDKVGGGARI 357

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           + V          G        AL  AD   +        +  +I  + +          
Sbjct: 358 LAVLEPRSNTMKMGIHKDEIAPALARADYVFLLQPENIPWNVVEIANDCVQPAKWSGNLD 417

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           N ++ I   +     +D ++V   G
Sbjct: 418 NLVDLI---VTEAQPEDHILVMSNG 439


>gi|149181751|ref|ZP_01860243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148850599|gb|EDL64757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 165

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 21/179 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKLQ L+          L  +  + +    I  + +  + +Q G +F  I G++ D H  
Sbjct: 2   MKLQTLL--------GVLPFYSTRGKGNPDIANLKNHHKKVQNGDLFFCIKGSEVDSHTL 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA A+V      L         + P+++V ++R+ +++ A   Y +  +   +
Sbjct: 54  AKEAVLSGAAAVVSERELEL---------DVPVIIVKDSRRAMAVLADYFYKQPTKQLKL 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           + VTGT+GK++    + +I   +G  +  IG            ++ TTP  + L +  +
Sbjct: 105 IGVTGTNGKTTTTHLIDRIFSLNGDKTGLIGTLYVKTGDEVIASKNTTPDSLTLQQLSA 163


>gi|74318590|ref|YP_316330.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thiobacillus denitrificans ATCC 25259]
 gi|74058085|gb|AAZ98525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 466

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 115/372 (30%), Gaps = 37/372 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTISSFAQ 158
              A  +     + +LAV GT GK++ ++ +  I + +    G     I     +S+   
Sbjct: 93  QWLADNVLRD--KWVLAVAGTHGKTTTSAMLAWILEDARLHPGFLVGGIPQNFGLSARLT 150

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D+            A     S+ V +                  +       NL  DH D
Sbjct: 151 DSPFFVIEADEYDTAFFDKRSKFVHY------------------RPRTAILNNLEFDHAD 192

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
                QA    +       +P     +    +A    V++R       V   G  G +  
Sbjct: 193 IFPDIQAI-ETQFHHLVRTIPGNGLIVANGREAALDRVLER--GLWTPVERFGSIGGWTA 249

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +   +         +++G+     + L GE    NAL A       G+ +A  ++ L +
Sbjct: 250 GEADASGSFDVHFNSALQGR---VRWELIGEHNRMNALAAIAAARHAGVPAAAAIDALSR 306

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R E  G    G  +Y D+AH   ++   ++ +R       I+            
Sbjct: 307 FENVKRRMEIRGA-VHGITVYDDFAHHPTAITTTVQGLRAKVGNARILAVLEPRSNTMKL 365

Query: 399 RPIMGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
             +      +L  AD       N   +  E +            +  +++ A    +   
Sbjct: 366 GVMKDALPASLAGADEVYCYGANLGWDAAEALAPLGEK--ARVFDNLDKLVA--QLVADG 421

Query: 457 NKQDVLVVAGKG 468
              D +++   G
Sbjct: 422 RPGDHVLMMSNG 433


>gi|329908805|ref|ZP_08274963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327546598|gb|EGF31569.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 461

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 111/359 (30%), Gaps = 21/359 (5%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ AS +  I + +G     +     I     +  ++        ++ 
Sbjct: 103 RWVLAVAGTHGKTTTASMLAWILEDAGYQPGFL-----IGGVPLNFGISARLAGEGGESA 157

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            ++        +          +R   +        NL  DH D      A    +    
Sbjct: 158 FFVIEADEYDTAFFDKRSKFVHYRARTV-----VLNNLEYDHADIFPDLGAI-ETQFHHL 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P+    ++   +A    V++R       +   G  G           H     T+ 
Sbjct: 212 VRTVPRIGRLLVNQREAALHTVIER--GCWSEIEWFG--GAADAAGWQLDEHADGSFTVI 267

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G       + L GE    NAL A      +G+  A  +  L     V  R E  G   
Sbjct: 268 FHGAPQGTVHWMLNGEHNRMNALAAIAAARHVGVPVAQAIASLGAFQNVRRRMELRG-EV 326

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              R++ D+AH   ++   +  +R +     I+              +   +   LA+  
Sbjct: 327 DAIRVFDDFAHHPTAITTTVAGLRQVVGTARILAVLEPRSNTMKLGTMKSALPGSLAEAD 386

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +V     + +    +   +   +    +K     +  E +   +      D ++V   G
Sbjct: 387 LVFGYGAKGDGKNALGWNLAEALAPLGQKAQAFDDLSELVAAIVAAARPGDQILVMSNG 445


>gi|239503928|ref|ZP_04663238.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB900]
          Length = 457

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 111/360 (30%), Gaps = 25/360 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        ++ +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFVVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKATLSAELISIDGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      E L     V  R E +G
Sbjct: 264 KVLENGNVVGEVKWSMTGQHSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 324 T-INGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           LAD  I     P   D   ++  I           +  E I   +    + D +V+   G
Sbjct: 383 LADEVI--WYQPEGLD-WDLQPVIEAATNHAQVSRSLDEIIDRIVNEAGEGDAVVIMSNG 439


>gi|329770442|ref|ZP_08261824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
           M325]
 gi|328836565|gb|EGF86225.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
           M325]
          Length = 446

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 23/277 (8%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+       +    + TNLG  H+DYH++ + Y NAK ++++  +      I+ 
Sbjct: 162 EVSSFQLE--GTKYFRPSIAAITNLGEGHLDYHKSIENYRNAKRKIYKNQV-DTDFLILN 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             +     + +   N                   +    + +                LP
Sbjct: 219 IKEKDKYNISEINSNIIFYDTKFNTDADVYIKDNMVIYGDVELFD--------STKLTLP 270

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N + AA +    G D   + + L     V  R ++VG N +G + Y D   T+ 
Sbjct: 271 GLHNVENGINAAVIAYKKGADIESIRKVLYNFSGVKHRLQYVGEN-KGIKYYNDSKATNP 329

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
                +  I  ++     VV  CGG         +      +  + +V       E  + 
Sbjct: 330 -----VATINALSGFEKNVVLICGGQDRGIDFHELSPYLNRVKTMVVV------GESADI 378

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +++         I+     +A   A ++    D++++
Sbjct: 379 LKSLADKNNVNCIKAIKIDDATEKASKLAVTGDIILL 415


>gi|167043784|gb|ABZ08475.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG3D20]
          Length = 480

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 130/397 (32%), Gaps = 49/397 (12%)

Query: 68  AEAIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+ +VV +A S  +          + P + +        L    L G+ P  ++A  GT 
Sbjct: 63  ADRVVVGNAVSRGNPQVEWLLRERSVPFVCLP------QLIGEELIGRRPTVVVA--GTH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S        +G +   +     +     D     PS   L  + +    +G  +
Sbjct: 115 GKTTTTSLTAFALCEAGCNPGYL-----VGGVPLDL----PSGSELGDSEAPFVIEGDEY 165

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            S          H     +       NL  DH D  +       +   L   ++P +   
Sbjct: 166 DSAFFDKRSKFIHY----RPRILILNNLEFDHSDIFRDLADVSRSFDNLL-RIVPSDGYV 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           ++  DD    ++          +LSVG  +   + +             +   G +  + 
Sbjct: 221 LLNGDDTNLFDL---PDAPWTTMLSVGTGEKNDLCITGFSEGPTGASFKLVWRGCEVGEI 277

Query: 303 LFPLPGEFQVYN-ALVAAGLCIAIGI------DSALVLEHL-----EKLHVVPGRFEFVG 350
            + LPGE+   N A+ A G  +A  +              L     +K   V  R E + 
Sbjct: 278 DWHLPGEYNARNVAMAALGSALAQAVSSGDEPSLDNPFAALGLPPFDKCRGVKRRQEIL- 336

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408
               G  +  D+AH   ++   L ++R       I+                 +   AL 
Sbjct: 337 VEREGLVVLSDFAHHPTAIAGALVSMRARWPEHRIIACFEPRSNTAVTNVFQDEFTEALA 396

Query: 409 LADIAIVTDDN--PRSEDPEKIRAEIIHGIPGFIEKG 443
            AD  ++   +   R  D E++ A+    +  F EKG
Sbjct: 397 QADEVLIGAIHRAERFADNERLDAD--AMVQRFREKG 431


>gi|262037265|ref|ZP_06010747.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
 gi|261748737|gb|EEY36094.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
          Length = 455

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 118/339 (34%), Gaps = 42/339 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A +   K    +++ TGT+GK++  + + ++ + +G +           +        
Sbjct: 81  DLAYKYMDK-KIKVISFTGTNGKTTTCTKMYELLEFAGYN------VKLAGNAGYSFAKL 133

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 L             ++ +E SS+ L+      I        NL  DH+  + + 
Sbjct: 134 VGDEEPL------------DYIVLELSSYQLEND--PQIHSYIAGIINLTPDHLTRYNSV 179

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-----NAGCRVLSVGYQGKFIH 278
           + Y+  K  +F +   K+  A+I  DDA  + + +R        A    LS   +G    
Sbjct: 180 EEYYITKFDIF-QKQNKDDFAVINLDDAEFERLCEREEIQNKIKAEKVYLSTEKKGTVFV 238

Query: 279 LKKVCAIHN--KQQVTISVEGKDFDFLFPLPG--------EFQVYNALVAAGLCIAIGID 328
            +    I    K ++    + +       L          +  + N L        + I 
Sbjct: 239 FEDNIYIMKNLKDRIDCYADEETEKVAEKLISVKDLSLKGKHNLENMLFLISGAKILNIP 298

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              + E L+    +  R E          ++++ +  +N +E  LK I +      I++ 
Sbjct: 299 DEKIKEFLKTTKALEHRLENFFVKEN--TVFINDSKGTN-VESTLKAIDSFEKP--IILI 353

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             G D+      ++ KI   +  + ++ D+ P  E+   
Sbjct: 354 CGGDDKKISNDELIKKIKEKVEFVYLIGDNAPLLEECMD 392


>gi|238898847|ref|YP_002924529.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466607|gb|ACQ68381.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 445

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 144/407 (35%), Gaps = 67/407 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I++S   SL        S   I ++ +   F            P  ++AVTG++GKS
Sbjct: 67  ADVILLSPGISLAHPMLQAASKKGIDIIGDIELFCREI-------PPVPVVAVTGSNGKS 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V Q+ Q +G      G     +                      L  Q    + +
Sbjct: 120 TVTTLVTQMAQTAGWPVSMGGNIGIPA--------------------LKLLKQKSRLIVL 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH D +      Y  AK+R+++        A+I
Sbjct: 160 ELSSFQLE--TTHTLAAKAATVLNITEDHADRYPLGLNQYQAAKLRIYQN----AHTAVI 213

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD  +        +A    +S G       L +       Q    +V          L
Sbjct: 214 NADDPLTLPRNGTQKSATKFEVSFGLNQGQYRLHQDGHDFWLQASDQNVLNTK---DMKL 270

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+    NAL A  L  A+ I     L+ L +   +P RFE +   +    I    A   
Sbjct: 271 IGKHNYLNALAALALADAVDIPREASLKALIEYKGLPHRFEKIFEKNGICWINDSKATNV 330

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            S    +K+++    G + ++ G                    AD +I+  D   +++  
Sbjct: 331 GSTLAAIKSVQ--CQGTLHLLLGGQ---------------GKSADFSILQPD--LNQNRI 371

Query: 427 KIR-----AEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVV 464
           +I      AE +  +    E   R E +  A+++    L K D +++
Sbjct: 372 QIYCFGQGAETLAALRP--EVSQRTETLEQAMKLLKSRLKKGDTVLL 416


>gi|170719003|ref|YP_001784164.1| UDP-N-acetylmuramate [Haemophilus somnus 2336]
 gi|168827132|gb|ACA32503.1| UDP-N-acetylmuramate [Haemophilus somnus 2336]
          Length = 458

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 86/265 (32%), Gaps = 14/265 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NLG DH D     QA    +       +PK    + +A +   KE +     +    
Sbjct: 185 IINNLGFDHADIFDNLQAIQR-QFHHMIRTMPKSGRILAFAHEQSVKETLDMGCWSEMHF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L     G+          H+     +  +GK   +  + + G+  + NAL+A      +G
Sbjct: 244 L-----GQDQEWHTERIAHDSSHFAVYHQGKKAGEVQWNIVGQHNMNNALMAIAAAYHVG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +      + L        R E V     G  +Y D+AH    +   L  +R    G  RI
Sbjct: 299 VQVKDACQALYSFVNAKRRLE-VKGEVNGVTVYDDFAHHPAEILATLTALRDKVGGGARI 357

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           + V          G        AL  AD   +        +  +I  + +          
Sbjct: 358 LAVLEPRSNTMKMGIHKDEIAPALARADYVFLLQPENIPWNVVEIANDCVQPAKWSGNLD 417

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           N ++ I   +     +D ++V   G
Sbjct: 418 NLVDLI---VTEAQPEDHILVMSNG 439


>gi|71909112|ref|YP_286699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
 gi|118595653|sp|Q47AA2|MURD_DECAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71848733|gb|AAZ48229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
          Length = 450

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 85/414 (20%), Positives = 153/414 (36%), Gaps = 63/414 (15%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP-ENILA 119
            +A   GA+ + +S     +          P++        + LFA  +  + P   I+A
Sbjct: 61  AEATFAGADFVALSPGVP-KATPEIAALEIPLI------SEIELFADGVREQVPNSQIIA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++  +    +   +G+ +   G    IS  A D  +       L +       
Sbjct: 114 ITGSNGKTTTTALTAHLLNGAGVPAIACG---NISPSALDALMDAQDAGALPQ------- 163

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELL 238
                  VE SS  L+      +   A +  N+  DH+D +  +   Y  AK R+F+   
Sbjct: 164 ----VWVVELSSFQLE--TTHHLNAAAATVLNVSEDHLDRYEGSLANYAAAKSRVFQG-- 215

Query: 239 PKESPAIIYADDAY-------SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             +   ++  DD +        ++++    NA  R +  GY    I   K   +      
Sbjct: 216 --KGVMVLNRDDDWSMANGRCGRKMVTFGLNAAPRGVDYGYADGAIWRGKDKLVAIDA-- 271

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                         L G     NA+ A  LC AIG+D   ++E L+    +P R E V  
Sbjct: 272 ------------LKLSGLHNAANAMAALALCEAIGVDPLRLIEPLKGFSGLPHRVETVAE 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              GG +YVD +  +N +   L  I  +  GR + +   G  + Q   P+   +      
Sbjct: 320 --IGGVLYVDDSKGTN-VGATLAAIEGM--GRKVAIVLGGDGKGQDFSPLKPALEKHGRA 374

Query: 412 IAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A++        D   I   +   G+P  I  G+   A+          D +++
Sbjct: 375 VALI------GRDAAAIGMALEGSGVPTRIL-GDMEAAVLWLAAQAQAGDCVLL 421


>gi|68248734|ref|YP_247846.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae 86-028NP]
 gi|68056933|gb|AAX87186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae 86-028NP]
          Length = 452

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 84/270 (31%), Gaps = 15/270 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH D     +A    +       +P     +  A +  +KE +     
Sbjct: 178 NPRTLIVNNISFDHADIFDDLKAIQR-QFHHMIRTIPASGLVLSSASEQSAKETLALGCW 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           +  + L     GK          ++     +   G+   +  + + G+  ++NAL+A   
Sbjct: 237 SQQQFL-----GKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAA 291

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G+      + L        R E V     G  +Y D+AH   ++   L  +R    
Sbjct: 292 AHHTGVAIEDACKALGSFVNAKRRLE-VKGEVNGITVYDDFAHHPEAILATLTALRDKVG 350

Query: 382 GRIIVVFGCGGDRD--QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           G  I+            G        AL  AD   +      S +   I  + +   P +
Sbjct: 351 GVRILAVLEPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQCVQ--PAY 408

Query: 440 IEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
                +R+  +   +      D ++V   G
Sbjct: 409 WNANLDRL--VDMIVAEAQPTDHILVMSNG 436


>gi|255994322|ref|ZP_05427457.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacterium
           saphenum ATCC 49989]
 gi|255993035|gb|EEU03124.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacterium
           saphenum ATCC 49989]
          Length = 451

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 107/287 (37%), Gaps = 25/287 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T+   E SS  L+   +   K       N+  DH+D H+T + Y  AK R+FE    ++S
Sbjct: 152 TYFVTEVSSFQLEA--ISKFKPFISIILNITEDHLDRHKTMENYIAAKCRVFENQDERDS 209

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                ADD     V K AH +     ++  +      +K  A     ++ ++++G+    
Sbjct: 210 LIY-NADDEG---VAKCAHGSQALKYAISLKNP----QKNGAYLKDGKLILAIDGRTQVL 261

Query: 303 L----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L GE  + N L A+   +  G     +   ++K   V  R E+V T    G  
Sbjct: 262 CDAKDVNLFGEHNIQNILAASLAALLAGASIDSIGNTVKKFKAVEHRLEYVDTA--CGVK 319

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y++ +  +N ++     I+ +  G  I +   G D+              +  + +    
Sbjct: 320 YINDSKGTN-VDASTIAIKALPGG--IHLIAGGYDKGADFSEFARGFDGKVKALYLFGAT 376

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
             R E   K       G  G I   N   E +  A       D++++
Sbjct: 377 KERFEKEVK-----HAGFEGRISVCNTLRECVEKASSSAASGDIVLL 418


>gi|160935708|ref|ZP_02083083.1| hypothetical protein CLOBOL_00598 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441452|gb|EDP19162.1| hypothetical protein CLOBOL_00598 [Clostridium bolteae ATCC
           BAA-613]
          Length = 452

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 136/407 (33%), Gaps = 58/407 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVTG 122
           G E  ++S    L      +  +  I ++          L   A+           A+TG
Sbjct: 68  GVELCIISPGIPLDSPFVAVVDDAKIPILGEIELAYQCGLGKLAAITGTNGKTTTTALTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                       +I +     +F +G                    Y +K L  ++   V
Sbjct: 128 ------------EILKARYEETFVVGNIG---------------DPYTSKVL-EMTEDSV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T    E SS  L+   +   +    +  N+  DH++ H T + Y   K         KE 
Sbjct: 160 TVA--EVSSFQLE--TIMDFRPNVSAILNITPDHLNRHGTMENYIRIK-ECVTLNQTKED 214

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGK 298
             ++  DD   +E   +      RV+        +  F             + T+ V   
Sbjct: 215 AVVLNYDDPVLREF-GQNPELKPRVIWFSSREMLKDGFCMDGDNIVYCQNGRQTVVVNVH 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D      L G     NA+ AA + + +G+  + +   +E  H V  R EFV    R G  
Sbjct: 274 DMQ----LLGRHNYENAMAAAAIALEMGVPMSDITRVIEGFHPVEHRIEFV--RERTGVR 327

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y + +  +N  +  ++ +R +    +++    G D++      + +    +  + ++   
Sbjct: 328 YYNDSKGTNP-DAAIQALRAMPGPTLLI--AGGYDKNSEYDEWVSEFEGKVRYLVLI--- 381

Query: 419 NPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  +KI      HG    +   +  EA++      +  D +++
Sbjct: 382 ---GQTRDKIAECAKKHGFTEIMYAEDMQEAVQVCAVYADIGDYVLL 425


>gi|28198151|ref|NP_778465.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Temecula1]
 gi|182680782|ref|YP_001828942.1| UDP-N-acetylmuramate [Xylella fastidiosa M23]
 gi|28056211|gb|AAO28114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Temecula1]
 gi|182630892|gb|ACB91668.1| UDP-N-acetylmuramate [Xylella fastidiosa M23]
 gi|307579248|gb|ADN63217.1| UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 471

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 128/369 (34%), Gaps = 19/369 (5%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H ++P+ IA     +VV +A S  + +     ++    +          A R+      +
Sbjct: 52  HGYLPEHIAADCAEVVVGNALSRGNAAVEALLDSGCRYISGP----QWLAERVL--PGRD 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTIS-SFAQDNRLTTPSPIYLAKA 173
            LAV GT GK++  + +  + + +G +   +  G       S      L+  S   L   
Sbjct: 106 TLAVAGTHGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAG 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
               + + +  V  +         R   +  +       NL  DH D      A      
Sbjct: 166 EVSAAVRPLFVVEADEYDTAFFDKRSKFVHYRPRVVILNNLEYDHADIFPDVAAIQRQFH 225

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L    +P     I+  +D    EV+  A      V   G+  +F    ++ A     + 
Sbjct: 226 HLV-RTIPGRGRLIVNGEDQRLAEVL--AMGCWTPVERFGFDPEFHWSARLIAAD-GSRF 281

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++  EG +     + L G   V NAL A     A+G+  A V+  L +   V  R E +G
Sbjct: 282 SVWHEGCEVGQVSWSLLGRHNVLNALAALAAAHAVGVAPAAVIPSLAQFRSVKRRLECLG 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LD 408
                  +Y D+AH   ++   L+ +R       IVV                 +A  L 
Sbjct: 342 ERG-AVTVYDDFAHHPTAIATTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAPSLQ 400

Query: 409 LADIAIVTD 417
            AD  +  D
Sbjct: 401 AADTVVFLD 409


>gi|294783653|ref|ZP_06748977.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480531|gb|EFG28308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 1_1_41FAA]
          Length = 432

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 108/300 (36%), Gaps = 36/300 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TGT+GKS+  + +  +   +G  +   G                     L++AL 
Sbjct: 92  KIIAITGTNGKSTTTAKISDLLNHAGYKACYAGNIG----------------RSLSEAL- 134

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  + +  VS+E SS  L+   ++  +       N+G DHI+ + +   Y++ K  + +
Sbjct: 135 -LHEKDLDFVSLELSSFQLEN--VENFRPYISMIINMGPDHIERYNSFDEYYDTKFNIAK 191

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +    I   DD    E+ KRA     + +SV    +     +   I+  +   I  
Sbjct: 192 NQ-DENQYFIENIDDV---EIEKRAKQIKAKRISVSKSKEANVYVEDNKIYVGKDFIIEA 247

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +         L G   + N L        + ID   + E L     +  R E        
Sbjct: 248 D------KLSLKGIHNLENTLFMVATAEILNIDREKLKEFLMVATPLEHRTELFFNYGDV 301

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I    A   +S          I + +  ++   G D+     P+   I  ++ ++ ++
Sbjct: 302 KFINDSKATNVDS------TKFAIQANKDSILICGGYDKGVDLAPLAEMIKENIKEVYLI 355


>gi|254426827|ref|ZP_05040534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax sp.
           DG881]
 gi|196192996|gb|EDX87955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax sp.
           DG881]
          Length = 441

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 106/301 (35%), Gaps = 42/301 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            E ++A+TG++ KS+V + + Q+    G++    G                        A
Sbjct: 105 SEPLVAITGSNAKSTVTTLLGQVADACGMNPGIGGNLGV-------------------AA 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  L  Q      +E SS  L+      +     +  N+ +DH+D + +   Y  AK R+
Sbjct: 146 LELLDDQ-ARLYVLELSSFQLE--TTYSLSAEVATILNVSQDHLDRYASFADYLAAKQRV 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQV 291
           ++        A+   DD     +  R      R +S G   +  +    +   +  + + 
Sbjct: 203 YDGC----QVAVWNRDD-----LATRPPATVARQISFGAHPEADYRLDSENGQLLCRGEP 253

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +S+          L G     N L    +  A+ ++    L  ++    +P R + V  
Sbjct: 254 LLSLS------ELALTGHHNAMNILSVLAISDALSLNRDKALATVKAFTGLPHRCQLVAE 307

Query: 352 NSRGGRIYVDYAHTS--NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              G R + D   T+   +L  +     +I    I+V  G G  +D        +  L  
Sbjct: 308 AG-GVRWFNDSKATNVGATLAALTGIGESIEGKVILVAGGQGKGQDFSPLAEPARQYLRA 366

Query: 410 A 410
           A
Sbjct: 367 A 367


>gi|227543923|ref|ZP_03973972.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           CF48-3A]
 gi|300909671|ref|ZP_07127132.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           SD2112]
 gi|227186100|gb|EEI66171.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           CF48-3A]
 gi|300893536|gb|EFK86895.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri
           SD2112]
          Length = 434

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 82/302 (27%), Gaps = 40/302 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G  GK+S  + +  +      +S+ IG    +     D R                
Sbjct: 106 IGIAGAHGKTSTTALLSHVLAAVEPTSYLIGD--GVGKGNADARFFVFEAD--------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E   H L  H            TN+  DH DY        ++     +++
Sbjct: 155 ----------EYRDHFLAYH------PDYAIMTNVDFDHPDYFNDLADVRDSFETYGKQV 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVE 296
              +     + DD   + +     N    V   G         + +              
Sbjct: 199 ---QRAIFAWGDDPSLRNL-----NVDVPVYYYGTNPDDDFRAENIQRTPEGSTYDAYFR 250

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            +    F   L GE  V N+L    +     ++   + + L     V  RF         
Sbjct: 251 DQKLGTFTIHLYGEHSVLNSLAVLAVAYMEHMNMDEIQQELANFSGVKRRFSETDIADIT 310

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                DYAH  + ++  +   R       +I VF                 +L  AD   
Sbjct: 311 II--DDYAHHPSEIKATIDAARQKYPDREVIAVFQPHTYSRLAAYIDGFAESLSRADKTF 368

Query: 415 VT 416
           VT
Sbjct: 369 VT 370


>gi|319786422|ref|YP_004145897.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464934|gb|ADV26666.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 462

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 89/292 (30%), Gaps = 39/292 (13%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV-THVSVEAS 190
            +  + +  G  +   G                         L  L  Q V    ++E S
Sbjct: 127 LLAHLLRAGGHRTALAGNIGL-------------------PLLEVLEPQPVPEFWAIELS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+        G         NL  +H+D+H ++  Y   K+RL  E  P+   A++ A D
Sbjct: 168 SYQTGDVARSGAHPEVAVVLNLFPEHLDWHGSEDRYIEDKLRLVTEARPR--TAVLNAAD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +      G R++    +  +    +  A++                  PLPG  
Sbjct: 226 PR----LAALELPGSRIIWFNREDGWH--LRDDALYRGDDFVFDT------AAVPLPGRH 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N         A+G+D+  +         +P R +++G     G +    + T ++  
Sbjct: 274 NRGNLCAVLAAIEALGVDATPLAPAAMDFRPLPHRLQWLGERDGIGYVNDSISTTPHASL 333

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PR 421
             L        G  + +   G DR         ++        +    N PR
Sbjct: 334 AAL----DCHRGSPVAILLGGHDRGLDWHGFAERLRAQPPKAVVTMGANGPR 381


>gi|311742800|ref|ZP_07716609.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium
           marinum DSM 15272]
 gi|311314428|gb|EFQ84336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium
           marinum DSM 15272]
          Length = 495

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 89/440 (20%), Positives = 148/440 (33%), Gaps = 61/440 (13%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLS----LFASRLYGKHPENILAVTGTSGKSSVA 130
           SA +L   S     +TPILV    R          A RL G+     L VTGT+GK++  
Sbjct: 93  SAPTLVVTSPGWSPSTPILVEAAGRGLPVWSEVELAWRLRGEDAAPWLGVTGTNGKTTTV 152

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +  GL S  +G                          + +  +    ++VE S
Sbjct: 153 QMLDAILRADGLRSAAVGNVG------------------RPVLEAVMDPEPYDVLAVELS 194

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-- 248
           S+ L  H    +   A +  N+  DH+D+H +  AY  AK R+++        A +Y   
Sbjct: 195 SYQL--HWSSSLSCRASTVLNVAPDHLDWHGSHVAYAAAKGRIYQH----AQVACVYNVQ 248

Query: 249 DDAYSKEVMKRAHNAGCRVLSV----------GYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           D A  + V+      GCR +            G     +  +            +     
Sbjct: 249 DPATEQLVVDAEVVEGCRAIGFTLGLPGPGMIGLVEDVMADRAFVVDRQSNAAELGTL-A 307

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D            V +AL AA L  A G+    V + L        R   V T      +
Sbjct: 308 DLATPAGPAAPHVVADALAAAALARAHGVSQRAVRDGLRGFSPDAHRIADVATIDAIRYV 367

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV--T 416
               A    +    L++          VV+  GG         +   A +     ++  T
Sbjct: 368 DDSKATNPAAALASLRSFDH-------VVWIAGGLAKGATFDDLVGTAREHLRGVVLIGT 420

Query: 417 D-----DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           D     D  R   PE    E+++G    +   +R+  +  A  +    DV+++A  G  +
Sbjct: 421 DRDVVRDALRRHAPEVPVIEVLNGETDLM---DRV--VDAATSLARSGDVVLLA-PGCAS 474

Query: 472 VHIVTNGEKKMSVDCDIIRE 491
           +    +   +     D +R 
Sbjct: 475 MDQFRDYAHRGDAFADAVRR 494


>gi|255505599|ref|ZP_05347122.3| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bryantella
           formatexigens DSM 14469]
 gi|255266860|gb|EET60065.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bryantella
           formatexigens DSM 14469]
          Length = 468

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 98/296 (33%), Gaps = 26/296 (8%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + + +Q        A         ++  +    +  N+  DH++ H T + Y   K  + 
Sbjct: 161 TQMVTQTTEDSVTVAEISSFQLETIEAFRPKVSAILNITPDHLNRHHTMEEYIRVKELIT 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQ 289
               P+++  + Y D    + + +   +  CRV+         +G  ++  ++       
Sbjct: 221 LNQTPEDTCVLNYED----EILREFGKSLSCRVIFFSSLRTLEKGISLNGDRIEYRDGDT 276

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +     G+       LPG     N + AA + +A G+    +   L++   V  R EFV
Sbjct: 277 VIPFCSTGE-----LKLPGRHNYENVMAAAAMALAYGVSVEDICYVLKRFTAVEHRIEFV 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                            ++    ++ +   T     ++ G G D++      +      +
Sbjct: 332 AEVDGVAYYNDSKGTNPDAAIKGIQAMDRPT-----LLIGGGYDKNSDYEEWIQAFDGKV 386

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             + ++       +  EKI+      G    +      EA         + D +++
Sbjct: 387 RYLVLI------GQTREKIKEAAERCGFTDTVLADTFEEAFDFCAGHARRGDAVLL 436


>gi|213965210|ref|ZP_03393407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Corynebacterium
           amycolatum SK46]
 gi|213952062|gb|EEB63447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Corynebacterium
           amycolatum SK46]
          Length = 492

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 134/417 (32%), Gaps = 58/417 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
             AIV S  +          +   + V  +     +   ++L+G      L VTGT+GK+
Sbjct: 84  VVAIVTSPGWRPTSPLFGAAAEAGVPVFGDVALAFAGDCAQLWG-PKRTWLVVTGTNGKT 142

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +    G +   IG                        AL    +       +
Sbjct: 143 TTTSMLAAMLGEQGAAVGNIGV-----------------------ALYDALTAEPRIEVL 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A       H    I+  AG   NL  DHID+H + + Y   K R     +         
Sbjct: 180 AAELSSFQLHWAPNIRPDAGVLLNLAEDHIDWHGSYENYGMDKTRALRGAVAIYG----- 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303
           ADDA   E +++         SV              + +   V  +  G D        
Sbjct: 235 ADDADVVEHVEKMRKNDELGNSVVGFTDGPPEAHQVGVRDGMIVDRAFGGGDAAADDSEP 294

Query: 304 ---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                       PG   V +A+ A  +  +IG     +   LE   V   R + V   + 
Sbjct: 295 GIVIASIAGISPPGRAGVLDAVAATAMARSIGTSPEQIAAALEIFEVRAHRGQIVHKAND 354

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIA 413
              I    A   ++ +  L        G   VV+   G  +     P++ K A  L    
Sbjct: 355 VVWIDDSKATNPHAADAALS-------GHERVVWIVGGQLKGAEISPLVAKHAHRLQAAV 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRT----AIEMLNKQDVLVVA 465
           ++  D     D     + I   +P   I+  ++++A+      A E  N  DV+++A
Sbjct: 408 VLGVDRQLVSDA---LSRIAPAVPVVVIDDTDKVDAMAKVCMAASEYANPGDVVLLA 461


>gi|224542359|ref|ZP_03682898.1| hypothetical protein CATMIT_01538 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524741|gb|EEF93846.1| hypothetical protein CATMIT_01538 [Catenibacterium mitsuokai DSM
           15897]
          Length = 401

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 130/379 (34%), Gaps = 58/379 (15%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--------- 165
           +N++ V GT+GK S  ++++ I    G           I    +      P         
Sbjct: 38  KNMIHVAGTNGKGSTVNYLRSILNAHGYHVGTFTSPYMIKHNDRIRIDDQPISDEDLLAL 97

Query: 166 ---------------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                            I +   L Y SS  + +  +E    G    + + I+ I  + T
Sbjct: 98  INKYETVIEEKNLSMFEIDVLIMLDYFSSHDLDYRIIECGI-GGANDKTNVIQPIISAIT 156

Query: 211 NLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G DH+D    +     N KM + +E          +        V+ R          
Sbjct: 157 NIGNDHLDQIGPSLYDVINEKMGIIKE-------GQYFITSEVEGMVLARLQEQC----- 204

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGID 328
                       V   +   +       +D  F     G +QV NA +A  +    I +D
Sbjct: 205 ----DAMGATMVVVPEYQVSRYPFHFRYRDMAFTLEKQGVYQVANARLALTIANKLINLD 260

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                + +E+     GRFE +       ++ +D AH ++ ++ +L  ++ + +   + +F
Sbjct: 261 EKTTEKAIEEAVW-YGRFEMMNVAGH--QVILDGAHNTDGVKALLTTMQYMRTKDTVFIF 317

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               D+D  +   +   A        +T  N  R+ D E  R+             +  E
Sbjct: 318 SGLKDKDVDEMIELIDEAGYP---IYLTSFNDERASDLEDYRS-----FSTVTVVPHFAE 369

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           AI+ A+    K D LV+ G
Sbjct: 370 AIKVALL---KHDQLVITG 385


>gi|298245025|ref|ZP_06968831.1| FolC bifunctional protein [Ktedonobacter racemifer DSM 44963]
 gi|297552506|gb|EFH86371.1| FolC bifunctional protein [Ktedonobacter racemifer DSM 44963]
          Length = 472

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 145/425 (34%), Gaps = 68/425 (16%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT------ 150
            T + L L     + K+   ++A  GT GK S A  ++++ + +G ++            
Sbjct: 32  RTARLLELL-DNPHRKYTNTLIA--GTKGKGSTAVMIERVLREAGSTTGLYTQPDLHTFR 88

Query: 151 -----------------------STISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHV 185
                                    +                +  AL+  Y + + V H 
Sbjct: 89  ERIRVNGALIAEDEVAELIPTIKHEVEQIQASQEYGPFITYEIGTALAFLYFAQRQVQHA 148

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            VE    G      +    +    T++  DH++    T +     K  + ++     + A
Sbjct: 149 VVEVGL-GGRLDATNLTHPLVSVITSISYDHMNVLGNTLREIATEKAGIIKDHGVVVTSA 207

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---------------IHNKQ 289
               D      +   A     R++ VG        + V A               +  +Q
Sbjct: 208 H---DPEALLAIAAVARQREARMIRVGSAVADPAQQDVEAGNLPPLSYRYRLEERLGERQ 264

Query: 290 QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGR 345
           + ++    +++      L GE Q+ NA VA      +   G+      + L +       
Sbjct: 265 RFSVWTPQREYTGLELALAGEHQLENAAVALATLEQLREQGLTWDE--DALRRGLASVQW 322

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
              +    R   I VD AH ++S++ +++ +R T    R++ V     D+DQ        
Sbjct: 323 PARIEVVGRQPTIVVDGAHNTDSMQKLVQALRTTFAPRRLLFVLSTSKDKDQEGMIQT-- 380

Query: 405 IALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDV 461
             L  AD+ ++T+  NPR    E + A      PG     +    EA+  A+ + +K D+
Sbjct: 381 --LADADVVVLTNMHNPRVTPLETLSALFSRHAPGVELHSEPTSEEALDLAVRLADKDDL 438

Query: 462 LVVAG 466
           +   G
Sbjct: 439 ICATG 443


>gi|197285919|ref|YP_002151791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Proteus
           mirabilis HI4320]
 gi|194683406|emb|CAR44151.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           HI4320]
          Length = 436

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 140/400 (35%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L         +  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVSSPGIALSTPELVEARDHGVEIVGDIELF--------CREAKAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +  G+     G     +                      L +Q      +
Sbjct: 118 TVTTLVGEMAKADGIPVGVGGNIGVPALT--------------------LLTQPYDLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH++ +    + Y  AK+R+++         + 
Sbjct: 158 ELSSFQLE--TTYSLTAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDN----AKTCVY 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD  +  +  +      R +S G       L             ++V G++      +
Sbjct: 212 NADDVLTLPLAGK----DARCVSFGIGQGDYQLDNTNRY-------LNVNGENLLATSQM 260

Query: 307 P--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G+    NAL A  L  A+GI     L  L   H +  RF+ V +++    I    A 
Sbjct: 261 FLSGQHNYTNALAALALADAVGISRKASLAVLNTYHGLAHRFQLVYSHNGVRWINDSKAT 320

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L+ +     G + ++   G  +      ++  ++ D   +     D    + 
Sbjct: 321 NVGSTEAALRGLE--VEGTLHLLL-GGDGKSADFSALLPYLSGDNIRLYCFGQD---GQA 374

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R ++              EA+R     +   D++++
Sbjct: 375 LANLRPQVSQ------LTATMEEAMRLLAPTVQTGDMVLL 408


>gi|227356426|ref|ZP_03840814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           ATCC 29906]
 gi|227163536|gb|EEI48457.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           ATCC 29906]
          Length = 436

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 140/400 (35%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L         +  + +V +   F          +    I+A+TG++GKS
Sbjct: 66  ADLIVSSPGIALSTPELVEARDHGVEIVGDIELF--------CREAKAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +  G+     G     +                      L +Q      +
Sbjct: 118 TVTTLVGEMAKADGIPVGVGGNIGVPALT--------------------LLTQPYDLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
           E SS  L+      +   A +  N+  DH++ +    + Y  AK+R+++         + 
Sbjct: 158 ELSSFQLE--TTYSLTAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDN----AKTCVY 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD  +  +  +      R +S G       L             ++V G++      +
Sbjct: 212 NADDVLTLPLAGK----DARCVSFGIGQGDYQLDNTNRY-------LNVNGENILATSQM 260

Query: 307 P--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G+    NAL A  L  A+GI     L  L   H +  RF+ V +++    I    A 
Sbjct: 261 FLSGQHNYTNALAALALADAVGISRKASLAVLNTYHGLAHRFQLVYSHNGVRWINDSKAT 320

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              S E  L+ +     G + ++   G  +      ++  ++ D   +     D    + 
Sbjct: 321 NVGSTEAALRGLE--VEGTLHLLL-GGDGKSADFSALLPYLSGDNIRLYCFGQD---GQA 374

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R ++              EA+R     +   D++++
Sbjct: 375 LANLRPQVSQ------LTATMEEAMRLLAPTVQTGDMVLL 408


>gi|325276639|ref|ZP_08142373.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas sp. TJI-51]
 gi|324098224|gb|EGB96336.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas sp. TJI-51]
          Length = 449

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 132/404 (32%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     I    Q+  ++           + L +     V  +  
Sbjct: 119 SMLAWVLEHAGMSPGFL-----IGGVPQNFSVS-----------ARLGATPFFVVEADEY 162

Query: 191 SHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                  R   +          NL  DH D      +       L    +P E   I   
Sbjct: 163 DSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASIERQFHHLV-RTIPSEGLVIHPT 221

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLP 307
            +   + V+         V + G  G++   +      +  +  +  EG+    + + L 
Sbjct: 222 TEQALERVIGM--GCWTPVHTTGEGGQW---QARLLSADGSRFEVLFEGQAQGVVDWALT 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL        +G+  A+ +E L     V  R E V    +G  IY D+AH   
Sbjct: 277 GQHNVANALATLAAARHVGVVPAMGIEGLCAFKSVKRRMEKV-AEVQGVTIYDDFAHHPT 335

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++   L  +R  +    +I V     +  + G        +++ AD  I         D 
Sbjct: 336 AIATTLDGLRKRVGEAPVIAVIEPRSNSMKLGAHRDGLPESVNDADQVIWYAPANLGWDL 395

Query: 426 EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
               A+            + +EA I            +V+   G
Sbjct: 396 AATAAQ----CKVPSVVADSLEAIIERIKGQARPGTHVVIMSNG 435


>gi|225010501|ref|ZP_03700972.1| cytoplasmic peptidoglycan synthetase domain protein [Flavobacteria
           bacterium MS024-3C]
 gi|225005330|gb|EEG43281.1| cytoplasmic peptidoglycan synthetase domain protein [Flavobacteria
           bacterium MS024-3C]
          Length = 451

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 104/300 (34%), Gaps = 29/300 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + G+ GK+++ S +  +              + +  F +   LT  +   L +   YL
Sbjct: 106 VVIGGSHGKTTITSMILHVMHYH-EKEIDFMVGAQLDGFDKMVHLTEENDFMLLEGDEYL 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                       SS    Q +    K      + +  DHI+   T ++Y  A    F + 
Sbjct: 165 ------------SSPIDAQSKFLHYKPHIALLSGIAWDHINVFPTFESYC-APFESFIDS 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +          +D    E++++A N   ++                       VT  +E 
Sbjct: 212 IVAGGSLTFNQEDQVLNEMVEKATNTIRKI-----------AYTTPEASIDSGVTY-LET 259

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++      + G   + N   A  +C  +GID+    E +        R E V  N++   
Sbjct: 260 EEGPLPLEIFGMHNLNNLAGAKWICQHMGIDALDFYEAISSFRGASKRLELVAKNNQ-TA 318

Query: 358 IYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIV 415
           IY D+AH  + ++     ++      +++VV             +   K AL  AD+ +V
Sbjct: 319 IYKDFAHAPSKVKATTAAVKEQYPDRKLVVVLELHTYSSLDASFLKEYKNALAKADVGMV 378


>gi|294341158|emb|CAZ89559.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Thiomonas sp. 3As]
          Length = 498

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 103/351 (29%), Gaps = 51/351 (14%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS   +L    A + +  P +            A  +        LAV GT GK++  S
Sbjct: 70  VVSRGNAL--MEAILDAGQPYI------SGPQWLAEHVL--QGRWTLAVAGTHGKTTTTS 119

Query: 132 FVQQICQRSGLSSFQI--------GPTSTISSFAQDNRLTTPSPIYLAKALS-------- 175
            +  I   +GL+   +        G ++ +      +            A S        
Sbjct: 120 MLAHILDVAGLNPGFLIGGVPLDFGASARLGGDKTPHPNPPREQGGSDLASSARGEGESP 179

Query: 176 ------YLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYF 227
                  L   G   +  +         R   +  +       NL  DH D      A  
Sbjct: 180 SSTAWGRLGGGGFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAI- 238

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             +       +P+    ++       + V+  A      V+               A   
Sbjct: 239 ETQFHYLVRTVPRSGQLVVNVRSDALQRVL--ARGCWSEVVRFDDDENGW-----SAQGG 291

Query: 288 KQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +QQ  + + GK   +  +   G     NAL A       G+ +      L     V  R 
Sbjct: 292 EQQFEVRLRGKRVGEVRWSQTGAHNRSNALAAIAAAQHAGVFADEACAALCSFQGVKRRM 351

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGC 390
           E  GT   G ++  D+AH   ++   +  +R           GRI+ VF  
Sbjct: 352 ELRGTAG-GVQVIDDFAHHPTAIATTIAGLRHQMLADSHAALGRILAVFEP 401


>gi|260655415|ref|ZP_05860903.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
           anthropi E3_33 E1]
 gi|260629863|gb|EEX48057.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
           anthropi E3_33 E1]
          Length = 438

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 129/393 (32%), Gaps = 51/393 (12%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVSS  S    +        I VV      L   A  L G      +AVTGT+GK++  +
Sbjct: 68  VVSSGVSPASEAVKQAEGRGIPVVGE----LEFLAPWLPG----KTIAVTGTNGKTTTTA 119

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  + +  G S   +G                       + L+  +   V +  +E SS
Sbjct: 120 LLGHLLRCRGQSVAVVGNIG--------------------EPLANAAGTAVDYTVMELSS 159

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L  H            TNL  DHID+H + + Y   K+++F        P     +  
Sbjct: 160 FQL--HWNKSFTPQVALLTNLAPDHIDWHGSYENYVADKLKVF------GRPGKGNWEIV 211

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            +++            L  G +G  I+         +      +  +       L G+  
Sbjct: 212 QARDAALVPSGGSVCTLG-GTEGTRIYWDDQAVWLERDSGREKLFDRS---QLSLVGQHN 267

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NA +A      I    A + + L      P R + V      G  +VD +  +N    
Sbjct: 268 LENAAMAGAALALIDKSFAPL-QGLSDFLPPPHRCQLVRVRR--GVTWVDDSKGTNV--A 322

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
             +       G  I++   G  + +    +   +     ++ ++  ++ + E      A 
Sbjct: 323 STRTALEGIDGPKIIIL-GGKGKGEKYETLAQTVKARARNVILIGAESDKIE-----AAL 376

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              G+          E + TA  +    D +++
Sbjct: 377 REAGVQSIHRTSCMEEVVSTADGLARPGDTVLL 409


>gi|328462937|gb|EGF34759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 389

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 20/302 (6%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    +   +S ++ +     ++ A         +  +       TN+   H+D+H
Sbjct: 52  PHHAFDAGNIGIPVSQVAQKAGKDDTIVAELSSFQLCGIKTLHPHIAVLTNIYEAHLDWH 111

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
             +  Y  AKMR+     P +   + +       E+ + A  +  +++    +       
Sbjct: 112 GNRANYVAAKMRITMNQTPDDYFIMNWD----LPEMHQLAKQSQAQIVPFSRKQAA---- 163

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              A      +T   +         +PG   + NAL A       G+    + E L    
Sbjct: 164 GARASLIDGWLTFDGDKIMPASDMQIPGLHNIENALAAIAAAKLKGVSDDAIREVLRTFS 223

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R +++ T   G R+Y D   T+  +E     +       +      G DR      
Sbjct: 224 GVKHRIQYLET-INGRRVYNDSKATN--VEAATVALNAFQQPIVW--LAGGLDRGLPMDA 278

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +   +  + +     P       + A+++       +  N + A+  A E     D
Sbjct: 279 LTPLVKKHVKSMVVFGQTAP-------LMAKLLKMPVSRFKTENVMTAVPLAYEASRPGD 331

Query: 461 VL 462
           V+
Sbjct: 332 VI 333


>gi|150020139|ref|YP_001305493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
 gi|166224767|sp|A6LJK7|MURD_THEM4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149792660|gb|ABR30108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
          Length = 426

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 150/446 (33%), Gaps = 77/446 (17%)

Query: 51  GNKE--DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           G +   +GH    +A+    + I+VS     ++          I +  +T          
Sbjct: 46  GVQFEENGHT--EKALE--CDIILVSPGVHFENEIIKEAKRRSIEI--DTEISFCQREFE 99

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
             G  P  ++AVTG+ GKS+  S +  +         +      I           P   
Sbjct: 100 KIGWTP-FVIAVTGSVGKSTTVSLIYHLLN----KKVRALLAGNIG---------IPIAK 145

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L   L         ++ +E SS  L        K    S  N+  +H+++H   + Y +
Sbjct: 146 LLNDNLR------ANYLVLEISSFQLFWS--KRFKPNISSILNIYPNHLNWHPDMEHYVS 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K ++      K+   +   +D Y ++                      +L KV A    
Sbjct: 198 SKFKI-ASFQSKDDVFVYNPNDEYIRK----------------------NLYKVSAKKVP 234

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +   S+E         L     V N   A  +   +G       E LE    +P R E+
Sbjct: 235 FRFDFSIE----KLPIHLRYRQTVENVAAAKTILETMGY--EFKWEFLEDFEKLPHRMEY 288

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T   G + + D   T+     +++ I        +++ G G + D      + K  + 
Sbjct: 289 V-TEINGVKFFNDSKATNAI--AVIRAIENFDDKLHLIMAGIGKNEDYTLLAKIIKEKVK 345

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRI-EAIRTAIEMLNKQDVLVVAG 466
           +  +               I  EI   + G    K + I +A+     M ++ DV++++ 
Sbjct: 346 ILALV------------GPIADEIEPYLDGVRYFKVDTINQAVNQLFSMASRGDVIMLS- 392

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
            G  +     N E++      ++ ++
Sbjct: 393 PGGASFDAFKNFEERGEYFKQLVMQL 418


>gi|193213410|ref|YP_001999363.1| FolC bifunctional protein [Chlorobaculum parvum NCIB 8327]
 gi|193086887|gb|ACF12163.1| FolC bifunctional protein [Chlorobaculum parvum NCIB 8327]
          Length = 433

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 124/384 (32%), Gaps = 38/384 (9%)

Query: 113 HPENILAVT----GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--- 165
           HPE  L       GT+GK +VAS +  I + SG  +        I    +      P   
Sbjct: 34  HPERRLGTVVHLAGTNGKGTVASCMASIFRASGRKAGLFTSPHLIDFTERIRIDGVPISQ 93

Query: 166 ---------------------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                                  +  A A +Y + +GV    +E    G      + +K 
Sbjct: 94  ARVAEYCSKLESAIVELGATFFEVTTAMAFAYFADEGVDASVIETGM-GGRLDATNAVKA 152

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 ++G +H ++         A+      + P        AD+     + + A    
Sbjct: 153 DIVIIPSIGLEHTEWLGDSLGAIAAEKA--AIIKPGSRVFTAVADEEALAPIRQAAGRQQ 210

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +  V           V       ++T++ +G        L G F   N  +A     +
Sbjct: 211 AELHHVSE--ASCETVAVQPGRLDLEITLAGDG-AHRISAQLTGSFHASNVTLAVMAARS 267

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            GI  + +   L  L     R           ++ +D +H  + +   ++ +R +     
Sbjct: 268 AGIGWSHIETGLADLRGTGYRARLEMLPG-SPKVMLDVSHNPDGMSRTVEALREVRGSFR 326

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEK 442
            +    G   D+    I  ++A    ++  V   + RS  PE   AE+    GI    E 
Sbjct: 327 SLRVLLGVAADKDAAGIARQLASIADEVVAVPLPSTRSF-PEAELAEVCRDAGIGRVEEC 385

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
           G+  E I       +  D+++V G
Sbjct: 386 GDAAEGIDLLFSHADGDDLILVTG 409


>gi|331005799|ref|ZP_08329158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC1989]
 gi|330420436|gb|EGG94743.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC1989]
          Length = 469

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 103/323 (31%), Gaps = 33/323 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             + +LAV+GT GK++ +S +  I + + +S   +     I     +  ++         
Sbjct: 102 QGKWVLAVSGTHGKTTTSSMLAWILEYAKMSPGYL-----IGGVPNNFSVS--------- 147

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       +  +         R   +  +       NL  DH D      A    +
Sbjct: 148 --ARLGETPFFVIEADEYDSAFFDKRSKFVHYRPRTLVVNNLEFDHADIFDDLAAIQR-Q 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-----------VGYQGKFIHL 279
                  +P+    I         +V+ +   +    +S           VG Q      
Sbjct: 205 FHHVVRTIPENGRVIFPDKVPAIDDVISQGCWSETATMSQSHLSPSNSSSVGIQSPSSTT 264

Query: 280 KKVCAI-HNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +I  + +   +  E  K     +   GE  + N L A      +G+ + +    L 
Sbjct: 265 WFADSISEDGECFDVYYESDKQGQVNWSQLGEHNIANGLAAIAAAHHVGVTAEVSCAALS 324

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +   V  R E V  +  G ++Y D+AH  +++   L  +R       I+           
Sbjct: 325 EFGGVKRRMECV-ADVNGIKVYDDFAHHPSAIATTLNGLRKKVGKEKIIAVIEPRSNTMR 383

Query: 398 KRPIMGKIALDLADIAIVTDDNP 420
                  +A  +A+   V   NP
Sbjct: 384 MGVHAAHLAESVANADQVLWFNP 406


>gi|77461208|ref|YP_350715.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Pseudomonas
           fluorescens Pf0-1]
 gi|77385211|gb|ABA76724.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Pseudomonas fluorescens
           Pf0-1]
          Length = 449

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 129/410 (31%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     +      +     +P ++ +A  Y S+           
Sbjct: 119 SMLAWVLEHAGMSPGFL--IGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHY 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I    +
Sbjct: 177 ------------RPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPTTE 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGE 309
              + V++        V + G  G++          +     +  EG       + L G+
Sbjct: 224 PALQRVIEM--GCWTPVQTTGAGGQWQVK---LLKDDGSAFEVMFEGVSQGVVEWELTGQ 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+  ++ +  L     V  R E V    RG  IY D+AH   ++
Sbjct: 279 HNVANALATLAAARHVGVVPSMGIAGLSAFKSVKRRMEKV-AEVRGITIYDDFAHHPTAI 337

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAI------VTDDNPR 421
              L  +R  I    +I +     +  + G        ++  AD  I      +  D   
Sbjct: 338 ATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPDSVVDADQVIWYAPANLGWDLAG 397

Query: 422 SE---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +        I ++ + GI            I            +V+   G
Sbjct: 398 TAALCTVPSIVSDSLEGI------------IERVKSQAQPGTHVVIMSNG 435


>gi|261416751|ref|YP_003250434.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373207|gb|ACX75952.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328181|gb|ADL27382.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 453

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 95/282 (33%), Gaps = 33/282 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S     L     +  + VTGT GK S  S +  I  + G ++   G              
Sbjct: 95  SQIQLFLEQTQSKATVGVTGTLGKGSTVSMISHILDKCGKANAIGGNFGV---------- 144

Query: 163 TTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                     AL  L  +       +E SS  L       +    G    +  +H+D+H+
Sbjct: 145 ---------PALDLLEDETPDRISILELSSFQLM---TLSVSPDVGVVLRVSTEHLDWHK 192

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           + + Y +AK  L      +E   +   D   + ++   +       +S+           
Sbjct: 193 SVEEYRDAKANLVRWQ-KREGTCVYLKDAEPTAKIASESPAKTKYAVSLADGASNGDGDA 251

Query: 282 VCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           V         T++++G         + G +Q+ N   A   C A+G+  A   E L+   
Sbjct: 252 VI-----DGATLTIDGSTLYLADCKVRGIYQLENMAAATLACKALGVKVADAFEALKSYE 306

Query: 341 VVPGRFEFVGTNSRGGRIYVD-YAHTSNS-LEMILKNIRTIT 380
            +P R EF G   RG   Y D YA   ++ +       R   
Sbjct: 307 TLPFRMEFKGEK-RGIEFYNDSYATRPDATIAATGSMKRPFA 347


>gi|332519851|ref|ZP_08396315.1| cytoplasmic peptidoglycan synthetase domain protein [Lacinutrix
           algicola 5H-3-7-4]
 gi|332044410|gb|EGI80604.1| cytoplasmic peptidoglycan synthetase domain protein [Lacinutrix
           algicola 5H-3-7-4]
          Length = 451

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 104/301 (34%), Gaps = 31/301 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           + + G+ GK+++ S +  +         + +G                     +   L+ 
Sbjct: 106 VVIGGSHGKTTITSMILHVMHYHDRDVDYMVGAQL--------------EGFDVMVKLTE 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +   V       SS    + +    K      + +  DHI+   T + Y   + ++F +
Sbjct: 152 DNDFIVLEGDEYLSSPIDRRPKFHLYKPNIALLSGIAWDHINVFPTYENYVE-QFKIFVD 210

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            + +        +DA  K+V++ + N   ++                  +  +     +E
Sbjct: 211 SIVQGGSINYNEEDAEVKKVVEASENPIRKI------------AYQTPEYTVENGETLLE 258

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +      + G+  + N   A  +C  +GID     E +   +    R E +   S   
Sbjct: 259 TPEGPLPIEIFGQHNLNNLAGAKWICQHMGIDEDDFYEAISSFNGASKRLEKI-AESNNS 317

Query: 357 RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAI 414
             Y D+AH+ + +E   K ++   ++  ++               +   K ALD AD+A+
Sbjct: 318 VAYKDFAHSPSKVEATTKAVKEQYSNKTLVACLELHTYSSLNAEFLKEYKGALDAADVAV 377

Query: 415 V 415
           V
Sbjct: 378 V 378


>gi|282899451|ref|ZP_06307418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195715|gb|EFA70645.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 466

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 99/276 (35%), Gaps = 19/276 (6%)

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            V              +    G +T    DH+  H+T + Y++ K +L    L      I
Sbjct: 161 WVIGELSSYQIESSWSLSPHIGIWTTFTPDHLARHKTLEDYYDIKAKL----LRNSRLQI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-- 303
           I  DDAY  +V  + H       SV   G  I  K     +      +S + +    +  
Sbjct: 217 INGDDAYLSKVGLQ-HWPHAYWTSVKGLGHLIGGKGFYIENGWVTEKLSADSEPQPIVAV 275

Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + GE    N L++ G     GI+ A +   +++   VP R + V T      I   
Sbjct: 276 TDLKMVGEHNQQNLLMSVGAARLAGIEIAAINHGVQQFPGVPHRLQHVCTWEGIQFINDS 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A   ++ E+ LK++++ T     ++   G  +       + +I    A + ++      
Sbjct: 336 KATNYDAAEVGLKSVKSPT-----ILIAGGEAKAGDDTGWLKRIQEKTAAVLLIGS---A 387

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           +E   K    + +G   F       +AI  A ++  
Sbjct: 388 AETFSKRLETVGYG--NFEIVETMEKAIPRAAQLAK 421


>gi|168183481|ref|ZP_02618145.1| bifunctional protein FolC [Clostridium botulinum Bf]
 gi|182673315|gb|EDT85276.1| bifunctional protein FolC [Clostridium botulinum Bf]
          Length = 429

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 131/407 (32%), Gaps = 49/407 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--------- 146
           + T K L L  +          + + GT+GK S  + +    + SG              
Sbjct: 23  ERTEKLLELLGNPHKR---LRCIHIAGTNGKGSTTAMISTALKESGYKVGMYTSPYIEEF 79

Query: 147 -------------------IGPTSTISSFAQDNRLTTPSPIYLA--KALSYLSSQGVTHV 185
                              I   + I    ++     P+   +       Y   + V   
Sbjct: 80  EERIQINGHNITKEDLGYIITKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKEVDFA 139

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            +E    G      + ++ I    T++  DH++    T +     K      ++ K    
Sbjct: 140 VIEVGL-GGRLDSTNVLEPILSIITSISYDHMNILGETLEEITYEKA----GIIKKAPVI 194

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +        K + K      C ++ V      I ++ +     +Q   +  +   ++   
Sbjct: 195 MYPQKKEVKKNIEKVCKEKNCELIKVEDNLINIEIEIIEKNMGQQSFKLKTKEDTYNICL 254

Query: 305 PLPGEFQVYNALVAAGLC---IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L GE Q+ N +         + +GI    +   +  L  V         N     +  D
Sbjct: 255 SLLGEHQIKNCITVILALEKLMKLGIKIEKIHI-ISALKKVKWPARLEIVNKNPLTVI-D 312

Query: 362 YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDN 419
            AH  + +E +  N+ +     ++I++ G   D+   +   M K  + LAD  + V   N
Sbjct: 313 GAHNIDGIESLKNNVSKYFKYNKLILILGILKDK---QVEDMIKTLVPLADRVLTVAPHN 369

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R E+P+++   ++          +  E    A       D++++ G
Sbjct: 370 DRGENPKELMHIVLKHNESCEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|71275714|ref|ZP_00651999.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Dixon]
 gi|71897830|ref|ZP_00680056.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Ann-1]
 gi|71163605|gb|EAO13322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Dixon]
 gi|71732385|gb|EAO34439.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Ann-1]
          Length = 471

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 126/367 (34%), Gaps = 19/367 (5%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++P+ IA     +VV +A S  + +     ++    +          A R+      + L
Sbjct: 54  YLPEHIAADCAEVVVGNALSRGNAAVEALLDSGCRYISGP----QWLAERVL--PGRDTL 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           AV GT GK++  + +  + + +G +   +  G       S      L+  S   L     
Sbjct: 108 AVAGTHGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAGEV 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             + + +  V  +         R   +  +       NL  DH D      A       L
Sbjct: 168 SAAVRPLFVVEADEYDTAFFDKRSKFVHYRPRVAILNNLEYDHADIFPDVAAIQRQFHHL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               +P     I+  +D    EV+  A      V   G+  +F    ++ A     + ++
Sbjct: 228 V-RTIPGRGRLIVNGEDQRLAEVL--AMGCWTPVERFGFDPEFHWSARLIAAD-GSRFSV 283

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG +     + L G   V N L A     A+G+  A V+  L +   V  R E +G  
Sbjct: 284 WHEGCEVGQVRWSLLGRHNVLNVLAALAAAHAVGVAPAAVIPSLTQFRSVKRRLECLGER 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLA 410
                +Y D+AH   ++   L+ +R       IVV                 +A  L  A
Sbjct: 344 G-AVTVYDDFAHHPTAIATTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAPSLQAA 402

Query: 411 DIAIVTD 417
           D  +  D
Sbjct: 403 DTVVFLD 409


>gi|182414448|ref|YP_001819514.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
 gi|177841662|gb|ACB75914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
          Length = 442

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 130/418 (31%), Gaps = 59/418 (14%)

Query: 64  IAQGAEAIVVSSA-----------YSLQDFSATIRSNTPILVVDN-----TRKFLSLFAS 107
              GA  ++  +            + L  FS       P LV+           L L + 
Sbjct: 34  AELGAAGVIYDAKGTEFTAKAASLHRLVIFSPGFPPEHPWLVLARQAGCECLAELDLASV 93

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
              G     ++AVTGT+GK+++  F+    +  G  +  +G      SFAQ    +    
Sbjct: 94  FWRG----TVIAVTGTNGKTTLTEFLTHALRSIGRDARSVGNVG--HSFAQAVAESNGGT 147

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                     S Q  T               L   +  A  +TN+  DH++ H   ++YF
Sbjct: 148 SEQIAVCEVSSFQAET---------------LKHFRASATLWTNIAEDHLERHPGLESYF 192

Query: 228 NAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           NAK  L     +P    A            +      G  V +     +F          
Sbjct: 193 NAKWNLVLHTRVPATGTAHP----------LPFVGARGGGVFAGSSVRRFAERYGRPLTG 242

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   T                  Q  N L+A     A G+    +    ++  +   R 
Sbjct: 243 IEWVATEHQPTNPRLAGTVFADYPQRENYLLAEAWWRAAGLPVEQLELAAKRFDLGRHRL 302

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             V    R G  Y + +  +N    +   +   T+   +V+   G  +       + +IA
Sbjct: 303 ALVVE--RDGATYWNDSKATN-FHAVEAALERFTTP--VVLIAGGKAKGGDLAGFVHRIA 357

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +A + ++       E  E++                  +A+R A E+    D +++
Sbjct: 358 PRVAHVVLI------GETSEELAFHCAAFRVAHTRCSTLEDAVRRAAELAEPGDHVLL 409


>gi|170758367|ref|YP_001788481.1| FolC bifunctional protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405356|gb|ACA53767.1| FolC bifunctional protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 429

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 136/409 (33%), Gaps = 53/409 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--------- 146
           + T K L L  S          + + GT+GK S  + +  + + +G              
Sbjct: 23  ERTEKLLELLESPHKR---LRCIHIAGTNGKGSTTAMISAVLKEAGYKVGMYTSPYIEEF 79

Query: 147 -------------------IGPTSTISSFAQDNRLTTPSPIYLA--KALSYLSSQGVTHV 185
                              I   + I    ++     P+   +       Y   + V   
Sbjct: 80  EERIQINGNNIAKEDLSYIITKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKEVDFA 139

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            +E    G      + ++ I    T++  DH++    T +     K      ++ K    
Sbjct: 140 VIEVGL-GGRLDSTNVLEPILSIITSISYDHMNILGETLEEITYEKA----GIIKKAPVI 194

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +        K + K      C ++ V      I ++ +     +Q   +  +   ++   
Sbjct: 195 MYPQKKEVEKNIEKVCKEKNCELIKVEDNLINIEIEIIEKNMGQQSFKLKTKKDTYNIYL 254

Query: 305 PLPGEFQVYNALVAAGLC---IAIGIDSALVL--EHLEKLHVVPGRFEFVGTNSRGGRIY 359
            L GE Q+ N +         + +GI    +     ++K+     R E V   ++     
Sbjct: 255 SLLGEHQIKNCITVILALEKLMKLGIKIEKMHIISAIKKVKWP-ARLEIV---NKNPLTV 310

Query: 360 VDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTD 417
           +D AH  + +E +  N+ +     ++I++ G   D+   +   M K  + LAD  + V  
Sbjct: 311 IDGAHNIDGIESLKNNVSKYFRYNKLILILGILKDK---QVEDMIKTLVPLADRVLTVAP 367

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            N R E+ +++   ++          +  E    A       D++++ G
Sbjct: 368 HNDRGENSKELMHIVLKHNESCEHLEDYKECYDKAKSYCEDGDMILICG 416


>gi|124515890|gb|EAY57399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
           rubarum]
          Length = 487

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 150/438 (34%), Gaps = 51/438 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS     + ++         L + N    +   +S         ++AV GT+GKS+ +
Sbjct: 79  VIVSPGVPPRKWAGQEAP----LYIRNVMGEMEWASSWTA----VPLVAVGGTNGKSTTS 130

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +    + +G   F  G   T  S    +     SP+              T   VE S
Sbjct: 131 ALLAHFLEAAGERVFLGGNFGTPLSDMVLSERRGSSPLP-------------TVAVVELS 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S   +   +   + +     N+  DH+D + +   Y NAK   F + + KES  ++  D 
Sbjct: 178 SFQAE--TMGIFRPVVNLLLNITPDHLDRYLSVDHYRNAKWNAF-QTMEKESFTVLNRDP 234

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A    V         R+            +    I  +  ++ +++G +         E 
Sbjct: 235 ACG--VYPPFSPISSRLAWFYGSKGPCPDRTGGLILERDALSATLDGIEGLPPISWNLEK 292

Query: 311 -------QVYN----ALVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRG 355
                     N     L A     A G     V   LE+       +P R E VG     
Sbjct: 293 FPLEGMGNRQNLAAALLGAVLYLKATGKHPEQVTTVLEEAAASFRGLPHRMEVVGEWKGI 352

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I    A   ++  + L+     +    + +   G D+     P+   I   +  IA++
Sbjct: 353 RFINDSKATNVDATRLALEGYAGHSP--FVHLILGGRDKGAPYAPLREGIRTSVKSIAVL 410

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                  E  +KIR E+   +P      +  EA+  A    ++ D ++++     +  + 
Sbjct: 411 ------GEARDKIREELGSLVP-LRMCESLEEAVDVAAGQASEGDRVLLSPACS-SYDMF 462

Query: 476 TNGEKKMSVDCDIIREIL 493
              E++ +V   I+   +
Sbjct: 463 HGYEERGAVFRSIVENWI 480


>gi|15834759|ref|NP_296518.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum Nigg]
 gi|7190176|gb|AAF39017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           muridarum Nigg]
          Length = 433

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 138/395 (34%), Gaps = 73/395 (18%)

Query: 72  VVSSAYSLQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           VV S    +D      +    + VV + +      A +      +    +TGT GK++  
Sbjct: 79  VVRSPGISKDHPWVKAARAAQISVVTDIQ-----LAFQTKEFIEQKSFGITGTVGKTTTI 133

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F++ + +++G+ +F +G                         L  + + GV    VE S
Sbjct: 134 LFLEYLLRKAGIPAFAMGNVGV-------------------PILDGMQNSGV--RLVEMS 172

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L         L  G   N+  +H+DYH +   Y  +K  L        S  +   +D
Sbjct: 173 SFQLADQETSYPVLSGGMILNISDNHLDYHGSFLEYCQSKQNL--------SLCMRNPED 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +  +                        ++ C     ++V   +   D +         
Sbjct: 225 LWVGD------------------------QRFCGRSYWEEVQKYMRLLDKESALKPLYLH 260

Query: 311 QVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             YN   A  L  A   I  +L +E +        R E++G   + G  Y++ +  + ++
Sbjct: 261 DKYNYCCAYLLAQAEFPIAKSLFIEAVATFKKPSHRMEYLGE--KCGVHYINDSK-ATTV 317

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
               K + +I  G   +V   G ++      ++   +L     ++V       E  ++I 
Sbjct: 318 RATEKALLSI--GSRAIVILGGRNKGYSFVSLLP--SLRRFAKSVV----AMGECAQEIA 369

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++  G P  + + N  EA+  A E     DV+++
Sbjct: 370 QDL-DGFPVTVVR-NLHEALLCAEEQAIPGDVVLL 402


>gi|270284926|ref|ZP_06194320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum Nigg]
 gi|270288953|ref|ZP_06195255.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum Weiss]
 gi|30316140|sp|Q9PLG5|MURD_CHLMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 416

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 138/395 (34%), Gaps = 73/395 (18%)

Query: 72  VVSSAYSLQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           VV S    +D      +    + VV + +      A +      +    +TGT GK++  
Sbjct: 62  VVRSPGISKDHPWVKAARAAQISVVTDIQ-----LAFQTKEFIEQKSFGITGTVGKTTTI 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F++ + +++G+ +F +G                         L  + + GV    VE S
Sbjct: 117 LFLEYLLRKAGIPAFAMGNVGV-------------------PILDGMQNSGV--RLVEMS 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L         L  G   N+  +H+DYH +   Y  +K  L        S  +   +D
Sbjct: 156 SFQLADQETSYPVLSGGMILNISDNHLDYHGSFLEYCQSKQNL--------SLCMRNPED 207

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +  +                        ++ C     ++V   +   D +         
Sbjct: 208 LWVGD------------------------QRFCGRSYWEEVQKYMRLLDKESALKPLYLH 243

Query: 311 QVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             YN   A  L  A   I  +L +E +        R E++G   + G  Y++ +  + ++
Sbjct: 244 DKYNYCCAYLLAQAEFPIAKSLFIEAVATFKKPSHRMEYLGE--KCGVHYINDSK-ATTV 300

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
               K + +I  G   +V   G ++      ++   +L     ++V       E  ++I 
Sbjct: 301 RATEKALLSI--GSRAIVILGGRNKGYSFVSLLP--SLRRFAKSVV----AMGECAQEIA 352

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++  G P  + + N  EA+  A E     DV+++
Sbjct: 353 QDL-DGFPVTVVR-NLHEALLCAEEQAIPGDVVLL 385


>gi|164686739|ref|ZP_02210767.1| hypothetical protein CLOBAR_00334 [Clostridium bartlettii DSM
           16795]
 gi|164604129|gb|EDQ97594.1| hypothetical protein CLOBAR_00334 [Clostridium bartlettii DSM
           16795]
          Length = 429

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 135/407 (33%), Gaps = 49/407 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152
           +N+ K L L       +    I+ V GT+GK SV SF+       G              
Sbjct: 23  ENSLKLLELLG---NPQDKLKIIHVAGTNGKGSVCSFIANSLHAQGYKVGLYTSPYLEKF 79

Query: 153 -----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR-----LDGI 202
                I+               + + +  +  +G ++ +       +  +      +D +
Sbjct: 80  TERIRINGENIPEEDVARIVTLMREKIEQMVKEGFSYPTEFEIETAMAFYYYWEQGVDYV 139

Query: 203 KLIAG-----------------SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            L  G                    +L  DHI     T       K      ++      
Sbjct: 140 ALEVGLGGRYDATNVIKDSLASVIVSLSLDHIGILGDTLGKIAYEKA----GIIKPNGLT 195

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           I Y     + EV+K   +      S   +  F  +    +  + Q    +++G+ F D  
Sbjct: 196 ISYKQKEEAAEVIK---DVCKEQNSEYIEVDFDSINVKKSDVSSQIFDCTIDGEKFEDME 252

Query: 304 FPLPGEFQVYNALVAAGLCIAI----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             L G+ QV NA++A  +  AI    G++     E ++K          +          
Sbjct: 253 IQLIGDHQVNNAVLALTVLKAIRDKRGVEL--SNEAIKKGFHDTKWPGRIEKIKDNPVFI 310

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +D AH  +    +   +     G+ +  F  G   D+    ++  +      +   T D+
Sbjct: 311 IDGAHNEDGARSLTNALEKNFKGKKLT-FLIGMLADKDIDSVLDLLMDKFEKVVTTTPDS 369

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R+   E+++A+I       I      +A++  ++   K +V++ AG
Sbjct: 370 DRAISCEELKAKIEKYGKEVIAIPKIEDAVQYVLDHAEKDEVIIAAG 416


>gi|332187168|ref|ZP_08388908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           S17]
 gi|332012868|gb|EGI54933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           S17]
          Length = 429

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 100/317 (31%), Gaps = 53/317 (16%)

Query: 67  GAEAIVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G +A+VVS    L       A   +  P++        + LFA       P  ++ +TGT
Sbjct: 64  GFDALVVSPGVPLNTHPLAAAARAAGVPVI------GDIELFAQARKNLPPHKVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + V  I + +G+ +   G                         L         
Sbjct: 118 NGKSTTTALVHHILKTAGVPTLMGGNIGL-------------------PILGQAPLPEGG 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +        N+  DH+D +     Y  +K RLF  +      
Sbjct: 159 VYVLELSSYQIDL--TQSLDCDVAVLLNITPDHLDRYDGFAGYAASKARLFA-MQTAGHV 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++   D  S  + +            G  G+   L  +       Q             
Sbjct: 216 AVVGTGDEASANIAQ------------GLAGRTDDLVTIAPDTVIDQ----------RRW 253

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA  A  +  A+GID A +   L     +P R + V T +    +    A
Sbjct: 254 PALHGPHNAQNAQAAIAVTRALGIDEAAIEAGLASYASLPHRMQHVATRNGVAFVNDSKA 313

Query: 364 HTSNSLEMILKNIRTIT 380
               S    L     + 
Sbjct: 314 TNPESTAPALAAFPRVH 330


>gi|260553791|ref|ZP_05826061.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Acinetobacter sp.
           RUH2624]
 gi|260405095|gb|EEW98595.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Acinetobacter sp.
           RUH2624]
          Length = 457

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 111/364 (30%), Gaps = 33/364 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +     +     ++        +  +
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL--IGGVPLGFSESARLGGGKYFCVE 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  Y S+                               NL  DH D      A       
Sbjct: 159 ADEYDSAFFDKRSKFVHYH------------PKTAILNNLEFDHADIFDDLAAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQV 291
           L    +P E   I    + +  EV++        V+    +           I  +    
Sbjct: 207 LV-RTIPSEGRIIAPITETHIDEVLEM--GCWTPVIRTSLEANEKAALSAELISIDGSHF 263

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            +   G    +  + + G+  V NAL        +G+      + L     V  R E +G
Sbjct: 264 KVLENGHAIGEVKWSMTGQHSVANALATIAAAQHVGVSLEKACDALSNFGGVKRRMELLG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALD 408
           T   G  +Y D+AH   +++  L    + +   R+  +          G        +  
Sbjct: 324 T-VNGIEVYDDFAHHPTAIDTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSAR 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVV 464
           LAD  I          PE +  ++   I     +        E I   +    + D +V+
Sbjct: 383 LADDVI-------WYQPEGLDWDLQPVIEAASNRAQVSRSLDEIINRIVNEAGEGDAVVI 435

Query: 465 AGKG 468
              G
Sbjct: 436 MSNG 439


>gi|218290829|ref|ZP_03494898.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239187|gb|EED06388.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 432

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 128/406 (31%), Gaps = 57/406 (14%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           D  R+ LS         HPE+ L      GT+GK SV + +  +    G  +        
Sbjct: 23  DRMRRILSKL------DHPESDLCFYHVAGTNGKGSVCAMLAAMLTALGYRTGLYTSPGL 76

Query: 153 IS-----------------SFAQDNRLTTPSPIYLAKALSYL--------SSQGVTHVSV 187
                              +   +                 L         S GV    V
Sbjct: 77  GGFNGRVAIDGVPIAEPEFAEYVEAVRRASDTSDPPTEFEVLTAVALLAFRSAGVE-RVV 135

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
             +  G      + +     + TN+  DH++    T       K  + +  +P       
Sbjct: 136 WETGLGGRLDATNVVWPHVTAITNVSHDHVEILGPTLVDIAREKAGIVKPGVP---VVTA 192

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD AY + + + A   G R++SVG   +F        +    +               L
Sbjct: 193 CADGAY-RVIERTAARRGSRLVSVGRDVQFTITGAGVRLRGAYRGLFR---DAPSVRLGL 248

Query: 307 PGEFQVYNALVAAGLCIAIG---IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            GE Q  NA V+  + + +G   I  A     L  L  V         N  G  I +D A
Sbjct: 249 CGEHQAQNATVSLAM-LELGEGRIAEANWERALASLESVRWPLRCEVFNLGGRLIVIDGA 307

Query: 364 HTSNSLEMILKNIRTITSGR----IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           H       + + +R +  G       +VF    D+D   R +  ++     D  +V   +
Sbjct: 308 HNEEGARTLARALRRLGKGVGANGWRMVFAAFADKD--VRGMFAQMLPLACDALMVRSPH 365

Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLV 463
           PR  DP  + A      P        +  +A++ A++      ++V
Sbjct: 366 PRGADPRALAALACEIRPDLSIHVMSSIEDAVQEALDHPEP--IVV 409


>gi|325959936|ref|YP_004291402.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Methanobacterium sp. AL-21]
 gi|325331368|gb|ADZ10430.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Methanobacterium sp. AL-21]
          Length = 470

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 147/410 (35%), Gaps = 45/410 (10%)

Query: 74  SSAYSLQDFSATIRSNTPIL--VVDNTRKFLS--LFASRLYGKHPENILAVTGTSGKSSV 129
           S        + T+  N P+   + +   + LS    +  +  +   + + +TGT GK+S 
Sbjct: 67  SEEIEYAYVAPTVPLNAPVWEFLAEKNIEVLSNEYISDIINKQLEIDTIGITGTLGKTST 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              V +I + +G + +     S+         +       L K+           V+V  
Sbjct: 127 THTVAEIFRAAGYNVWSC---SSRMGNLLSEVIVDGIVNGLHKS---------NDVAVLE 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYA 248
             HG  +  +  ++L  G  TN+  DH+D    + + Y   K+ + +      S      
Sbjct: 175 LPHGTSR-LMSKVELKVGIITNIFPDHLDEFDYSMEKYVERKLFITQSSEILISGIQC-- 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLF 304
                    +   +    V+   ++     L KV        + I+      G + +F  
Sbjct: 232 --------KENIESFRDDVIYYCHE---HELCKVQGTLENGLLNINYNIPELGLEGNFNT 280

Query: 305 PLPGE-FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           P     +   N++ AA   +A GI    + + L     + G  E++G N +   ++ D A
Sbjct: 281 PFKLRGYYFDNSIGAAAAALAYGISEESIKKGLSNFKGIEGHMEYIG-NYKDREVHFDAA 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
                L   +  + +  S  ++VV       +   +  +G++    A + I +  N  ++
Sbjct: 340 FVPAGL---INTLESFDSENLVVVVDNPDSTNPRDKVKVGEVIGKYAKVIICSGYNETTK 396

Query: 424 DPE-KIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + K   ++I G        +   +   A   AI+     D++V  G G
Sbjct: 397 KFDVKAANDVIKGAQKSPAIKLATEDMFVAGELAIKHSEPGDIVVHVGPG 446


>gi|320450519|ref|YP_004202615.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermus
           scotoductus SA-01]
 gi|320150688|gb|ADW22066.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermus
           scotoductus SA-01]
          Length = 417

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 136/402 (33%), Gaps = 85/402 (21%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTGTSGKSSV 129
              Y     +  +  + P L     R  L    +  A RL    P  I+ +TGT+GK+S 
Sbjct: 52  EGDYPEVVAAPGVPLSHPHLEALKARGALILGEAELAYRLS---PAPIIGITGTAGKTST 108

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F   + +  GL + + G                  P  ++                E 
Sbjct: 109 TLFTAHLLRGQGLKALEGGNV---------------DPPLVS------VVDEAEVAVAEL 147

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+  R+   +       NLG DH+D H + +AY  AK+ L + L P+++      D
Sbjct: 148 SSFQLE--RIHVFRPRVAVLLNLGVDHLDRHGSVEAYHQAKLNLLKNLTPEDALVYNEGD 205

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                +V + A  +  R+                             G         P E
Sbjct: 206 ----PKVRQAALASPARLYPF------------------------TPGNS-------PRE 230

Query: 310 FQVYNALVAA-GLCIAIG--IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             +  AL A       +G  +++ L+ E L+ L   P RF+      +G  +++D +  +
Sbjct: 231 TNLRAALEATRAYLELLGRPLNTDLLQESLKTLPSPPHRFQIFA--RKGEVVFIDDSIAT 288

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +  +             I+    G D+      +   ++     +AI         D  
Sbjct: 289 RTPSVAAALEAAPAPIAWIL---GGEDKGADLEALRPLLSRVRVVLAI-------GRDGP 338

Query: 427 KIRAEIIHGIPGFI--EKGNR---IEAIRTAIEMLNKQDVLV 463
           K+   +  G+   +  +   R    +A+  A++ L +  VL+
Sbjct: 339 KMAEALGGGVEVVVLPQTDGRAALRQAVAEALKRLERGSVLL 380


>gi|328542964|ref|YP_004303073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412710|gb|ADZ69773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 466

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 104/291 (35%), Gaps = 32/291 (10%)

Query: 68  AEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A  ++   V+  +    +S  +     + V+ +   F      R        ++A+TGT+
Sbjct: 67  AALVLAPGVALTHPKPHWSVELARTAGVEVIGDIELFCRE---RRRICPDAPLIAITGTN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  + +  GL     G   T                     L     Q   H
Sbjct: 124 GKSTTTALIAHLLKTLGLDVQMGGNIGT-------------------PVLDLAPLQPGRH 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             VE SS+ +D      I+   G   NL  DH+D H T + Y   K RL          A
Sbjct: 165 YVVECSSYQIDLA--PSIEPTVGILMNLSPDHLDRHGTMENYAAIKERLVAG----SRTA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           ++  DD +S+ +  R   AG RV  + G+  +   +    +   +        G D   +
Sbjct: 219 VVGVDDRFSEAIADRIARAGVRVRRISGHLPQADGVFAEGSRLVEADSGAQTLGADLAGI 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             L G     NA  A     A+G+ +A +   L     +  R + V  + R
Sbjct: 279 GALRGRHNAQNAAAAFAALRALGLSAARIAGALVSFPGLAHRMQIVARSGR 329


>gi|213585604|ref|ZP_03367430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 320

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 121/329 (36%), Gaps = 44/329 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+A+TG++GKS+V + V ++ + +G++    G     +              
Sbjct: 21  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALM------------ 68

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYF 227
                   L         +E SS  L+      ++  A +  N+  DH+D +    Q Y 
Sbjct: 69  --------LLDADRELYVLELSSFQLE--TTSSLQAAAATVLNVTEDHMDRYPFGLQQYR 118

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK+R++E    K    ++ ADDA +  V      A  R +S G      HL +      
Sbjct: 119 AAKLRVYE----KAKVCVVNADDALTMPV----RGADERCVSFGVNMGDYHLNR-----Q 165

Query: 288 KQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           + +  + V+G+    +    L G+    NAL A  L  A+G+  A  L+ L     +  R
Sbjct: 166 QGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHR 225

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           F+    ++    I    A    S E  L  +     G + ++   G  +     P+   +
Sbjct: 226 FQLALEHNGVRWINDSKATNVGSTEAALNGL--HVDGTLHLLL-GGDGKSADFSPLARYL 282

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             D   +     D         +R EI  
Sbjct: 283 TGDRIRLYCFGRD---GAQLAALRPEIAQ 308


>gi|187933718|ref|YP_001884427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum B str. Eklund 17B]
 gi|226711899|sp|B2TIC9|MURD_CLOBB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|187721871|gb|ACD23092.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 458

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 118/352 (33%), Gaps = 43/352 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I  +TG+ GK++  + + ++ Q  G  ++  G   T                 L   +
Sbjct: 117 AKIYGITGSDGKTTTTTIISKMLQEEGYKTWVGGNIGTP----------------LFAQI 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + S+    V +E SS  L       + +     TNL  +H+D H+  Q Y +AK  +F
Sbjct: 161 EEIKSE--DRVVLELSSFQLMTM---NLPMDIAVCTNLAPNHLDMHKDMQEYIDAKKNIF 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  +   +  ++  +      A        S           K  A +    + +S
Sbjct: 216 LYQDATNTLI-VNRENEITYGFKAEAKGVVREFSS-------KRELKEGAYYKDGILYLS 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         + G   V N L A  +     +    + +  E  + V  R E V     
Sbjct: 268 GKEVCKKDNIVIKGMHNVENYLAAF-IATKNDVSIENMKKVAESFNGVEHRCELV-REIN 325

Query: 355 GGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G + Y D  A +       LK          +++   G D+     P+  +    + ++ 
Sbjct: 326 GVKYYNDSIASSPTRTLAGLKAFDK-----RVILIAGGYDKHLLFEPLANEGYPYIKELI 380

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
           ++       E  + +  E+    GI     E     EA++ A  +  + D++
Sbjct: 381 LLGQTK---EKIKDVFKELEASKGIKINISEVSTLEEAVKKAQNLARQGDII 429


>gi|172035156|ref|YP_001801657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. ATCC 51142]
 gi|254766046|sp|B1X090|MURD_CYAA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|171696610|gb|ACB49591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cyanothece sp. ATCC
           51142]
          Length = 456

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/383 (16%), Positives = 132/383 (34%), Gaps = 35/383 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVA 130
            S    L   S  +  +TP L+    R+   +               + +TGT+GK++  
Sbjct: 62  ASDLPELIVVSPGVPWDTPFLIEARERQIDTIGELELAWRYLQSSPWVGITGTNGKTTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V  I Q + L++   G     +     ++L   +       ++ +SS           
Sbjct: 122 ALVAAIFQGAKLNAPSCGNIGYAACELALSKLKKDNTSNYDWIIAEISSYQCESSQE--- 178

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +    G +T    DH+  H+T   Y+  K  L    L +    I   DD
Sbjct: 179 -----------LSPKIGLWTTFTADHLSRHKTLDNYYAIKASL----LYRSEYQIFNGDD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPG 308
            Y   + +   +          +GK   L         Q   +   G+      LF +PG
Sbjct: 224 PY---LHQTGLHQWADAYWTTVKGKDNLLCDPSQGVYIQDNWVVAFGELILPLNLFKMPG 280

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N L+A       GI+   +   +     VP R E++ T      I    A   ++
Sbjct: 281 FHNQQNLLMAIAAARLAGIEKGAIASAIATFTGVPHRLEYIRTVDGIDFINDSKATNYDA 340

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            E+ L ++++ T     ++   G +++   +  + +I   +  + ++ +    +E+  K 
Sbjct: 341 AEVGLLSVQSPT-----ILIAGGEEKEGDDKKWIAQIKSKVIKVLLIGE---AAENFAKR 392

Query: 429 RAEIIHGIPGFIEKGNRIEAIRT 451
             +  +     +E  +  +AI  
Sbjct: 393 LHDCDYHDYEIVETMD--KAIER 413


>gi|266624107|ref|ZP_06117042.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           hathewayi DSM 13479]
 gi|288864069|gb|EFC96367.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           hathewayi DSM 13479]
          Length = 355

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 9/203 (4%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +   E SS  L+   +   +    +  N+  DH++ H+T   Y N K R+  E   KE  
Sbjct: 157 YTVAEISSFQLE--TITDFRPDVSAILNITPDHLNRHKTMDCYINVKERI-AENQTKEDA 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I+  DD   +   +          S     + I L     I N   V + +        
Sbjct: 214 CILNYDDPVLRRFGETIAPRVIYFSSRELLPEGICLDGDMIIRNHDGVRMEIIN---IHD 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     N + AA + + +G+    +   +     V  R EFV   +  G  Y + +
Sbjct: 271 MNLLGRHNHENVMAAAAIAMELGVPLETIQSVIRDFKAVEHRIEFVAEKA--GVKYYNDS 328

Query: 364 HTSNSLEMILKNIRTITSGRIIV 386
             +N  +  ++ +  +    I++
Sbjct: 329 KGTNP-DAAIQAVNAMPGPTILI 350


>gi|190149285|ref|YP_001967810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262598|ref|ZP_07544228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914416|gb|ACE60668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872021|gb|EFN03735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 436

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 137/395 (34%), Gaps = 58/395 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +L         N  + VV +   F+              I+A+TG +GKS+V 
Sbjct: 70  IVISPGLALATPEIQQAINAGMEVVGDIELFVREA--------KAPIIAITGANGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +++G+     G                         LS L+ +      +E S
Sbjct: 122 TLVTEMAKQAGIKVGMGGNIGV-------------------PVLSLLNDE-YELFVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++         I+  +
Sbjct: 162 SFQLE--TTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN----VIVNGE 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +  +  +A     R      +    +  +   +++     I  +         + G 
Sbjct: 216 DRLTYPLETQAVKKLIRF----AEHNAEYTMRNGILYSGDDAIIPTK------EMLISGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N+L A  L  A GI    +++ L+    +  RF+ V TN     +    A    S 
Sbjct: 266 HNEMNSLAAMALAEAAGIPREGIVKALQMYGGLNHRFQAVKTNDGVRWVNDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++   +G + ++   G  +      +   I            D           
Sbjct: 326 VAALNGLQ--VAGTLYLLL-GGDGKAADFSELKPLINKPNIVCYCFGQDG---------- 372

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A++       +      +AI      L K D++++
Sbjct: 373 AQLAALSSQSVLVETMQQAIEQIRPQLKKGDMVLL 407


>gi|152967145|ref|YP_001362929.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kineococcus
           radiotolerans SRS30216]
 gi|151361662|gb|ABS04665.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kineococcus
           radiotolerans SRS30216]
          Length = 533

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 150/438 (34%), Gaps = 79/438 (18%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G + +V S  +           R+  P+    +      +             L +TGT+
Sbjct: 105 GFDLVVTSPGWRPDADLLVGAARAGVPVW--GDVELAWRM----RPETGAAPWLTLTGTN 158

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V     +I + +GL +   G   T                 L +AL +    G   
Sbjct: 159 GKTTVVEMTAEILRAAGLRATSAGNVGTP----------------LVEALRH--PHGFEV 200

Query: 185 VSVEASSHGLDQHRLD---GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           ++VE SS+ L     D    ++ +A +  NL  DH+D+H + +AY  AK R+++     E
Sbjct: 201 LAVELSSYQLHWLSTDVESSVRPLASAVLNLAPDHLDWHGSMEAYALAKGRIYQN---TE 257

Query: 242 SPAIIYADDAYSKEVMKRAHNAG-CRVLSVG----------------YQGKFIHLKKVCA 284
              +    D  ++++++ A      R +                       F+  ++  A
Sbjct: 258 VACVYNVGDPRTEDLVREADVVEGARAIGFTRAVPGLSMLGLVEDVLCDRAFVAERRDNA 317

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   +  EG D            V N L AA L  A G+    V + +      P 
Sbjct: 318 AELCSLADLRPEGSDDPV-----APHTVENVLAAAALARAAGVPQIAVRDGVRAFRPAPH 372

Query: 345 RFEFVGTNSRG---GRIYVD----YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           R   V   S      R   D     AH +N+     +++  I  G        G   D  
Sbjct: 373 RVATVAAPSAATAQVRWVDDSKATNAHAANASLATFEHVVWIAGGD-----AKGATFDDL 427

Query: 398 KRPIMGK---IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRI----E 447
            +   G+     L  AD A+V  +  R   P+    E+   +P   E G   +       
Sbjct: 428 VQAHRGRLRGAVLIGADRALV-AEALRRHAPDVPVVEVE--LPQTAEVGAPLDHALLMDT 484

Query: 448 AIRTAIEMLNKQDVLVVA 465
            +  A E+    D +++A
Sbjct: 485 VVARAAELARPGDTVLLA 502


>gi|268317856|ref|YP_003291575.1| FolC bifunctional protein [Rhodothermus marinus DSM 4252]
 gi|262335390|gb|ACY49187.1| FolC bifunctional protein [Rhodothermus marinus DSM 4252]
          Length = 442

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 137/403 (33%), Gaps = 54/403 (13%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL--------SSFQIGPTSTIS 154
           +L A+          + + GT+GK S AS +  I + +G           + +G    I 
Sbjct: 30  ALLAAMGAPHRAYPCVHIAGTNGKGSTASLLAAIARAAGYRVGLHTSPHLWHVGERMRID 89

Query: 155 SFAQDNRLTTPSPIYLAKALS----------------YLSSQGVTHVSVEASSHGLDQHR 198
                      +                         Y + Q V    VE    G     
Sbjct: 90  GIPAPTTWLEKAVARCRPLFEQVQPSFFEATVALSFLYFAEQQVDLAVVEVGL-GGRLDA 148

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            + ++      T++G DH D    T +A    K  + +  +P  +        A  +E  
Sbjct: 149 TNVVQPRLAVITSIGLDHTDILGETIEAITREKAGIIKPGVPVLTGVTQPEALAVIRETA 208

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNAL 316
            R       +       + +HL++V       ++T     + + D    LPG  Q  NAL
Sbjct: 209 ARQQAPLHYLW------EEVHLEQVAPETVFMRLTARTPARRYEDLEVGLPGRHQAANAL 262

Query: 317 VAAGLCI----AIGIDSALVLEHL---EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           +A          +  D   + + L    +L  + GRF+ + T      +  D AH  + L
Sbjct: 263 LAIRAAELVLPEVLDDPRPIRQGLRDVRQLSGLRGRFDVLQTR---PLVVADVAHNPDGL 319

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +L  I  +     GR   ++    D+D     + G++      + +   ++PR+    
Sbjct: 320 AAVLTTIDALHPPGTGRRYAIWSALRDKDAPT--MAGQLVQAGFSVYVAALESPRAWSAV 377

Query: 427 KIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ A +      +PG     +  + ++     L   DVL++ G
Sbjct: 378 ELVAMVQQVGGQVPGVGTVASGWQLLQK---RLQADDVLLITG 417


>gi|320160936|ref|YP_004174160.1| folylpolyglutamate synthetase [Anaerolinea thermophila UNI-1]
 gi|319994789|dbj|BAJ63560.1| folylpolyglutamate synthetase [Anaerolinea thermophila UNI-1]
          Length = 466

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 134/414 (32%), Gaps = 55/414 (13%)

Query: 96  DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ------- 146
           D   KFL L      G   +   +  V GT GK S ++ +    +  G            
Sbjct: 37  DRIFKFLELL-----GNPQDKFFVFHVAGTKGKGSTSALIASALKAEGYRVGFYTSPHLQ 91

Query: 147 ------------------IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
                             +     I  F       T   I    A  Y + +G  HV+V 
Sbjct: 92  DYTERIQVNGEEISREDFVHLVEEIKPFVAMVPQLTTFEITTGMAFLYFARKGC-HVAVI 150

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIY 247
               G      + +       T+L  DH++    T       K  + +   P  +   + 
Sbjct: 151 EVGLGGRLDATNVVTPTVSVITSLSMDHMNVLGDTLAKIAFEKAGIIKPGKPVVTSPQLP 210

Query: 248 ADDAYSKEVMKRAHNAGCRV--------LSVGYQGKFIHLKKVCAIHNKQQVT---ISVE 296
              A  ++V +   +A  +V         S   +G+ + + K                 +
Sbjct: 211 EAMAVLEQVARERGSALYKVGVDFHFAPWSHDLEGQTLFVWKEDEQDMVNSFIESGAHTD 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLC-----IAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +      PL G  QV NA  A           + +  A + +    ++   GRFE +  
Sbjct: 271 WEPLRLRIPLLGYHQVQNAATAYAALQIGKTCGVPVSDAAIQKGFSTVYWP-GRFEIL-- 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +R   + VD AH  +S   +   +     G   V+   G   D+    ++G++   +  
Sbjct: 328 -NRNPMLIVDSAHNRDSALKLRLTLDDYLPG-KPVILLFGVSEDKDIAGMLGELLPRVKR 385

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +      +PR+ D + +   I              +A+ +A+E+  K + +++A
Sbjct: 386 VITTQSVHPRAMDAQTLVEWIHRYGVRAEAIVPVEKALASAMEIAQKSEAVILA 439


>gi|300868200|ref|ZP_07112832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillatoria sp.
           PCC 6506]
 gi|300333824|emb|CBN58016.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillatoria sp.
           PCC 6506]
          Length = 449

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 115/361 (31%), Gaps = 44/361 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHP 114
           H F P             +   L   S  +  + P L+         +            
Sbjct: 56  HSFAPA------------TPLKLIVVSPGVPWDLPALIRARELGIETIGEVELAWRHLQS 103

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  + +TGT+GK++  + +  I Q +G  +   G                 +   L    
Sbjct: 104 QPWIGITGTNGKTTTTALIAAIFQTAGFYAPACGNIG-------------YAACEL---- 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             L  +    V  E SS+ ++      I      +T    DH+  H+T + Y+N K    
Sbjct: 147 -ALGEKPPDWVIAEMSSYQIESS--PSIAPRISIWTTFTPDHLSRHKTLENYYNIKA--- 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             LL +    +I  DD Y +E    +    C     G         +   I +   + + 
Sbjct: 201 -HLLKQSELQVINGDDPYLREKGVESWPKACWTSVNGKAELLGDPARGAYIEDGWAIALG 259

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +    D    + G     N L+A       GI+   + + +     V  R E + T + 
Sbjct: 260 EKILPVD-SLRMVGSHNQQNLLMAVATARLAGIEKDAIAQAITNFPGVSHRLEHIRTWAG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   ++ E+ L ++ T       ++   G  ++      +  I    A + +
Sbjct: 319 IDFINDSKATNYDAAEVGLASVATPA-----ILIAGGEAKEGDDIAWIETIQAKAAAVLL 373

Query: 415 V 415
           +
Sbjct: 374 I 374


>gi|9971921|gb|AAG10483.1|AF279106_45 predicted UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 436

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 92/273 (33%), Gaps = 26/273 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + +LA++GT GK++ +  +  I    G     +     IS+    +        ++ +A 
Sbjct: 101 KKVLAISGTHGKTTTSYMLTHIMLDQGRDVGFL--VGGISNNISGSACLGSDGTFVIEAD 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+           S                   N+  DH D              L 
Sbjct: 159 EYDSAFFDKRSKFIHYS------------PSTIVINNIEFDHADIFNNLDDIKRQFHHLI 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + ++P     + +ADD   ++++    + G     +        ++ V +       T+ 
Sbjct: 207 K-IIPSNGNVVYFADDKNIRDLI----DMGIWSNQIAINNNAHSIEAVYSDK-----TLK 256

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            E   +     PL GE    N + A       GI     ++ L     V  R E+ G + 
Sbjct: 257 YEESIYSLNELPLIGEHNFKNYISAILAAKTDGIQIQDSIKSLASFDGVKRRLEYKG-SF 315

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            G  IY D+AH   ++E     + T    + I+
Sbjct: 316 DGIEIYDDFAHHPTAIEFSSNALVTQNPSKKIL 348


>gi|319944700|ref|ZP_08018964.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lautropia mirabilis
           ATCC 51599]
 gi|319741949|gb|EFV94372.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lautropia mirabilis
           ATCC 51599]
          Length = 552

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 138/424 (32%), Gaps = 77/424 (18%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-------- 152
           F+   A+        +++A+TGT+GK++V      +   +GL +   G  S         
Sbjct: 111 FMDAIATLRAQGARTDVVAITGTNGKTTVTRLCAFLANEAGLEAVAAGNISPSMLDALMD 170

Query: 153 ------ISSFAQDNRLTTPSPIYLAKAL--SYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                 I       + + P      ++L  S  ++      ++E SS  L   R    + 
Sbjct: 171 RLGDLPIEPVPAPLQESAPEDESAPESLPPSAAAAAMPRLWALELSSFQLAVSRPPACQ- 229

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A    N+  DH+D+H + + Y  AK+R++    P     ++  DD  +   +    +  
Sbjct: 230 -AAVVLNVTPDHLDWHGSMENYRAAKLRIY----PAAERRVVNLDDPLADPDLPAPWDVP 284

Query: 265 CR---VLSVGYQGKFIHLKKVCAIHNKQQVTISV-----------EGKDFDFLFPLPGE- 309
                      + +     +V  +  +   ++             EG        LP E 
Sbjct: 285 AEPEVPQPAKGRSRAKAKVEVPVLAPRTDFSLHTPHSAPAFGLVREGGLAWLTEALPEEI 344

Query: 310 -----------------------------FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                                            N L A  L  A  +    +L  L    
Sbjct: 345 PGGRRRKVEPVDFVLNRLMPADALRVQGAHNHANVLAALALLRACDVPMRAMLHALRAFV 404

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
               R E V   +  G  Y+D +  +N +   +  ++ +  GR  V+   G  +DQ    
Sbjct: 405 TDHHRCEPVTVVN--GIEYIDDSKGTN-IGATVAALQGL--GRRAVLIAGGVGKDQDFSL 459

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   +A     + ++  D P       +RA +        +  +   A+R    +    D
Sbjct: 460 LAPAVAAHARAVVLIGRDAP------ILRAALADTGVALEDAADMDAAVRACARLAQAGD 513

Query: 461 VLVV 464
           V+++
Sbjct: 514 VVLL 517


>gi|307250719|ref|ZP_07532654.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857257|gb|EFM89378.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 439

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 83/265 (31%), Gaps = 14/265 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 170 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSSGCILSAAADENVQNTLKMGSYSELQF 228

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 229 I-----GEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 283

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRII 385
           +  A   + L        R E V     G  +Y D+AH   ++   +  +R  +   + I
Sbjct: 284 VSVAGACDALGSFINANRRLE-VKGEVNGITVYDDFAHHPTAIAATIDALRGKVGKEQRI 342

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKG 443
           +                 +IA  LAD   V    P +       I   +           
Sbjct: 343 LAVLEPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLTQPAKWS---A 399

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  E ++  +E     D ++V   G
Sbjct: 400 DLDELVKMIVEEAKPTDHILVMSNG 424


>gi|75907016|ref|YP_321312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anabaena
           variabilis ATCC 29413]
 gi|122063235|sp|Q3MF19|MURD_ANAVT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|75700741|gb|ABA20417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anabaena
           variabilis ATCC 29413]
          Length = 455

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 99/311 (31%), Gaps = 23/311 (7%)

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           I++  Q      P+   +  A   ++        +              +      +T  
Sbjct: 123 IAAIFQAAGFDAPACGNIGYAACEVALAATPPDWIIGEMSSYQIESSLTLAPHISIWTTF 182

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH+  H+T + Y++ K +L    L +    +   DDAY  ++     +          
Sbjct: 183 TPDHLARHKTLENYYDIKAKL----LRQSHLQVFNGDDAYLSKI---GASHWPDAYWTSV 235

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIG 326
           +GK   +           V   ++               + G   + N L+A        
Sbjct: 236 KGKDYLIGDKGFYIEDGWVVEQLQPNSSPQRIVAAEALRMVGAHNLQNLLMAVAAARLAD 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I    + + + +   V  R E + T      I    A   ++ E+ L ++++      ++
Sbjct: 296 IPPNAIDKAVREFPGVAHRLEHICTWQGIDFINDSKATNYDAAEVGLASVKS-----PVI 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           +   G  +       + KI    + + ++ +  P      +   EI  G   +       
Sbjct: 351 LIAGGEAKPGDDAAWLAKIQGQTSAVLLIGNAAPAF---AQRLQEI--GYSNYEIVETME 405

Query: 447 EAIRTAIEMLN 457
           +A+R ++++  
Sbjct: 406 QAVRRSLDLAK 416


>gi|315638156|ref|ZP_07893338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter upsaliensis JV21]
 gi|315481692|gb|EFU72314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter upsaliensis JV21]
          Length = 477

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 117/370 (31%), Gaps = 45/370 (12%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R FL     ++   +   I+ +T + GK+S+ +F+ ++ +   ++       +T+    
Sbjct: 140 ARYFLKKAKHKILKNNRLTIILITASFGKTSIKNFLYELLKDDFITHKSPRSVNTLMGIV 199

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +D          +     Y++  G           G        ++        +G  H+
Sbjct: 200 KDINENLQENTQI-----YIAEAGARVK-------GDILELSSFLEPQICIIGEIGGAHL 247

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           +Y +  +     K+   +    K++         +S  + K   N               
Sbjct: 248 EYFKNIENTRETKLEALQSKRLKQAFL-------HSSTLKKDESNMTIY---------DN 291

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            L    A  N    ++ +  K+  F   + G F   N          +G+    + + + 
Sbjct: 292 LLLNFNANLNGIDFSLRLNDKEEFFQSSILGAFNAENLCACVCCANYLGVKLETIKKQIA 351

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRD 395
            L  V  R + +   S+  +  +D     N   +       +    GR ++V     +  
Sbjct: 352 NLKAVEHRLQII---SKEPKFIIDDGFNGNFKGMSESYHLAKNY-QGRRVLVTPGIIEGS 407

Query: 396 QGKRPIMGKIALDLADIAIVTD-DNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +     + KI  +  D+ I++   N    E   KI   I+      +E            
Sbjct: 408 EEDNKKLAKIINESFDLVIISAHINAALFEKELKINKIILKEKAKLVEI---------LA 458

Query: 454 EMLNKQDVLV 463
           +     D+++
Sbjct: 459 KHTKNGDLIL 468


>gi|262316882|emb|CAZ44331.1| putative UDP-N-acetylmuramoylanalyl-D-glutamate-2-6-diaminoligase
           [Raphanus sativus]
          Length = 137

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 23/114 (20%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGN------------- 444
           M KIA + +D+ ++T DNP +EDP  I  +++ GI      +++ G              
Sbjct: 1   MTKIATEKSDVTMLTSDNPGNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRL 60

Query: 445 -----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                R  A+R A+ M  + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 61  FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQ-LEGDKKEFYDDREECREAL 113


>gi|225009953|ref|ZP_03700425.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C]
 gi|225005432|gb|EEG43382.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C]
          Length = 318

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 95/279 (34%), Gaps = 36/279 (12%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +GH     AI   A+ +V S                 + V+D        FA+R      
Sbjct: 53  NGHS--EAAIFA-ADLVVKSPGIPDTVPLVLALRQKGVSVIDEV-----EFAARYTE--- 101

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++       I +  G +    G                 S   L    
Sbjct: 102 AVLIGITGSNGKTTTTMLTHHILKSDGKAVAMGGNIGV-------------SFAKLVYEA 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRL 233
               ++ + +  +E SS  LD   ++  +      TN+  DH+D +      Y  AK R+
Sbjct: 149 HLPEAEKIDYYVLELSSFQLDN--IENFRPHIAIITNISPDHLDRYGYEMDRYTAAKFRI 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               LP +      AD       + +    G R ++   Q     + K  A    + + I
Sbjct: 207 SMNQLPTDYLIYD-ADCEVIGAALDQFPETGKR-IAFSTQ----KIIKNGACQKGENIEI 260

Query: 294 SVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +++ K F        L G   V N + A+     + ++ 
Sbjct: 261 ALDQKTFSMQINTLALEGTHNVKNTMAASAAATLVQMNL 299


>gi|15599215|ref|NP_252709.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PAO1]
 gi|218889699|ref|YP_002438563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa LESB58]
 gi|254242704|ref|ZP_04936026.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa 2192]
 gi|296387427|ref|ZP_06876926.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PAb1]
 gi|313109462|ref|ZP_07795421.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa 39016]
 gi|9950213|gb|AAG07407.1|AE004818_13 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PAO1]
 gi|126196082|gb|EAZ60145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa 2192]
 gi|218769922|emb|CAW25683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa LESB58]
 gi|310881923|gb|EFQ40517.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa 39016]
          Length = 451

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 131/409 (32%), Gaps = 48/409 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++  
Sbjct: 65  VVIGNALSRGNPAVEHVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     +      +     +P ++ +A  Y S+           
Sbjct: 119 SMLAWVLEHAGMSPGFL--IGGVPQNFGVSARLGGTPFFVVEADEYDSAFFDKRSKFVHY 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I  + +
Sbjct: 177 ------------RPRTAILNNLEFDHADIFPDLAAIERQFHHLV-RTVPGEGLIIRPSAE 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGE 309
              + V+         V + G  G++   +      +  +  +  +G    +  +PL G 
Sbjct: 224 KALERVLGM--GCWTPVQTTGEGGQW---QARLLAEDGSRFEVLFDGIVQGEVDWPLTGL 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL +      +G+  +     L +   V  R E V    RG  +Y D+AH   ++
Sbjct: 279 HNVANALASLAAARHVGVMPSQGAAALSEFRNVKRRMEKV-AEVRGVTLYDDFAHHPTAI 337

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI------VTDDNP 420
              L  +R         I +V         G        ++  AD  +      +  D  
Sbjct: 338 ATTLDGLRKQVGADTQVIAIVEPRSNSMKLGAHRDGLPDSVRQADQVLWYAPPNLGWDLA 397

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
            +     I +++           + +EA I    +       +V+   G
Sbjct: 398 ATAAQCAIPSQVC----------DTLEAIIEQVRQQARPGAQVVIMSNG 436


>gi|188589067|ref|YP_001921653.1| folylpolyglutamate synthase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499348|gb|ACD52484.1| folylpolyglutamate synthase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 437

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 137/386 (35%), Gaps = 43/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
            ++ V GT+GK S  S +  I    G                   I+         T   
Sbjct: 42  KLIHVAGTNGKGSTTSMITSILIGMGYKVGMYTSPFLEEFEERIQINGENIPKNKLTELI 101

Query: 168 IYLAKALSYLSSQGVTH---------------------VSVEASSHGLDQHRLDGIKLIA 206
             + KA+  +  +G  H                      +V     G +    + I  I 
Sbjct: 102 NTVKKAVDKVIEEGYEHPTEFEILTTAMYLYYYNEKVDYAVIEVGLGGELDSTNVITPIV 161

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++    +       K  + +E +P     +    +   + ++++A     
Sbjct: 162 SVITSISFDHMNILGNSLYEIAMQKAGIIKEEIP---VVVYPQTNEAMRAIIEKAKITNS 218

Query: 266 RVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG---- 320
           +V  +    G FI +K     +  Q+V I    + ++   PL GE Q+ N  VA      
Sbjct: 219 KVCEINSNSGTFIEVKHEEKFY--QKVKIDTGKELYNANLPLMGEHQILNLSVALTTIEI 276

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           LC   G+      + +E           +   ++   I +D AH    ++M+  N++   
Sbjct: 277 LCEREGLIL--NKKLIENSIESVKWKGRLEVLNKEPLIVMDGAHNIEGIKMLKSNVKKYF 334

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
                V    G   D+    ++ +I      + ++T  + R+E   +++  I+      I
Sbjct: 335 -KYNNVFLLLGILADKQVEEMIKEITPMAYKVYVLTPHSDRAELNTELKDHILKYNKNTI 393

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +  +A++T +     +D+++++G
Sbjct: 394 ALDSYEDAMKTVLSEATSEDLILISG 419


>gi|237796618|ref|YP_002864170.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Clostridium botulinum Ba4 str. 657]
 gi|229261845|gb|ACQ52878.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Clostridium botulinum Ba4 str. 657]
          Length = 429

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 130/407 (31%), Gaps = 49/407 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--------- 146
           + T K L L  +          + + GT+GK S  + +    + SG              
Sbjct: 23  ERTEKLLELLGNPHKR---LRCIHIAGTNGKGSTTAMISTALKESGYKVGMYTSPYIEEF 79

Query: 147 -------------------IGPTSTISSFAQDNRLTTPSPIYLA--KALSYLSSQGVTHV 185
                              I   + I    ++     P+   +       Y   + V   
Sbjct: 80  EERIQINGHNITKEDLGYIITKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKEVDFA 139

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            +E    G      + ++ I    T++  DH++    T +     K      ++ K    
Sbjct: 140 VIEVGL-GGRLDSTNVLEPILSIITSISYDHMNILGETLEEITYEKA----GIIKKAPVI 194

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +        K + K      C ++ V      I ++ +     +Q   +  +   ++   
Sbjct: 195 MYPQKKEVKKNIEKVCKEKNCELIKVEDNLINIEIEIIEKNMGQQSFKLKTKEDTYNICL 254

Query: 305 PLPGEFQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L GE Q+ N +        +   GI    +   +  L  V         N     +  D
Sbjct: 255 SLLGEHQIKNCITVILALEKLMKVGIKIEKIHI-ISALKKVKWPARLEIVNKNPLTVI-D 312

Query: 362 YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDN 419
            AH  + +E +  N+ +     ++I++ G   D+   +   M K  + LAD  + V   N
Sbjct: 313 GAHNIDGIESLKNNVSKYFKYNKLILILGILKDK---QVEDMIKTLVPLADRVLTVAPHN 369

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R E+P+++   ++          +  E    A       D++++ G
Sbjct: 370 DRGENPKELMHIVLKHNESCEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|288919056|ref|ZP_06413397.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
 gi|288349596|gb|EFC83832.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
          Length = 573

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 128/423 (30%), Gaps = 94/423 (22%)

Query: 61  PQAIA---QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
           P A+A   +GA+ IV SSA         +R + P +V     + L +   R     PE  
Sbjct: 87  PAALATELRGADVIVASSA---------LRDDHPEIVAA---RALGIPVMRRSDWLPELT 134

Query: 116 ---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AV G+ GK++ A+ +  + + +G     + PT+ I +       +  +      
Sbjct: 135 AAYRLVAVAGSHGKTTTAAMLTLVLRAAG-----VDPTAVIGAEVAQLGGSAVAGTS--- 186

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         +EA  +G       G+       TN+  +H D     +A  +A   
Sbjct: 187 ----------DVFVLEADEYGGA---FAGLDPELAVITNVEWEHPDLFPD-EAAVHAVFT 232

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHN------------------------------ 262
            F   +      ++  D      V+ R                                 
Sbjct: 233 DFAARVRPGGRLVVCGDHPGVAAVLARLDQRAAAPDQPRTARDQPRSTPGQPAPEQPRTA 292

Query: 263 --------------AGCRVLSVGY-QGKFIHLKKVCAIHNKQQV-TISVEGKDF-DFLFP 305
                         A  RV+  G+  G+               V T+  +G +  +    
Sbjct: 293 PDQPGPAPEQPGSAARARVVDYGFAAGRSWQAVGYAPRPGGGSVSTVWHDGVEVGELALA 352

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGR---IYVD 361
           LPG     NAL A      +G+     L  L        RF+ VG  S  GG    I  D
Sbjct: 353 LPGPHVALNALAALATSAELGVAPETALRALGTFSGAARRFDTVGQASTAGGTAVEIVDD 412

Query: 362 YAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH    +   +          ++  V                  A + AD   VTD   
Sbjct: 413 YAHHPTEIRATLRAARDRAAGRQVWAVTQPHTFSRLAALLDDFATAFEDADRVYVTDIYA 472

Query: 421 RSE 423
             E
Sbjct: 473 ARE 475


>gi|57242128|ref|ZP_00370068.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter
           upsaliensis RM3195]
 gi|57017320|gb|EAL54101.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter
           upsaliensis RM3195]
          Length = 477

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 118/370 (31%), Gaps = 45/370 (12%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R FL     ++   +   I+ +T + GK+S+ +F+ ++ +   ++       +T+    
Sbjct: 140 ARYFLKKAKHKILKNNHLTIILITASFGKTSIKNFLYELLKDDFITHKSPRSVNTLMGIV 199

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +D          +     Y++  G           G        ++        +G  H+
Sbjct: 200 KDINENLQENTQI-----YIAEAGARVK-------GDILELSSFLEPQICIIGEIGGAHL 247

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           +Y +  +     K+   +    K+S         +S  + K   N               
Sbjct: 248 EYFKNIENTRETKLEALQSKRLKQSFL-------HSSTLKKDESNITIY---------DN 291

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            L    A  N    ++ +  K+  F   + G F   N          +GI    + + + 
Sbjct: 292 LLLNFNANLNGIDFSLRLNDKEEFFQSSILGAFNAENLCACVCCANYLGIKLETIKKQIA 351

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRD 395
            L  V  R + +   S+  +  +D     N   +       ++   GR ++V     +  
Sbjct: 352 NLKAVEHRLQII---SKEPKFIIDDGFNGNFKGMSESYHLAKSY-QGRRVLVTPGIIEGS 407

Query: 396 QGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +     + KI  +  D+ I++   +    E   KI   I+      +E            
Sbjct: 408 EEDNKKLAKIINESFDLVIISAHINATLFEKELKINKIILKEKAKLVEI---------LA 458

Query: 454 EMLNKQDVLV 463
           +     D+++
Sbjct: 459 KHTKNGDLIL 468


>gi|330811945|ref|YP_004356407.1| UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380053|gb|AEA71403.1| UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 449

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 128/410 (31%), Gaps = 51/410 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++ +
Sbjct: 65  VVIGNAMSRGNPAVEYVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     +      +     +P ++ +A  Y S+           
Sbjct: 119 SMLAWVLEHAGMSPGFL--IGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHY 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I    +
Sbjct: 177 ------------RPRTAILNNLEFDHADIFPDLPAIERQFHHLV-RTIPSEGLVIHPTTE 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGE 309
              + V++        V + G  G++          +  Q  +  EG       + + G+
Sbjct: 224 PALQRVIEM--GCWTPVQTTGAGGQWQV---KLLKDDGSQFEVMFEGVSQGVVEWDMTGQ 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+  ++ +  L     V  R E V    RG  IY D+AH   ++
Sbjct: 279 HNVANALATLAAARHVGVVPSMGIAALNAFKSVKRRMEKV-AEVRGITIYDDFAHHPTAI 337

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
              L  +R  I    +I +     +  + G        ++  AD  I         D   
Sbjct: 338 ATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPESVVDADQVIWYAPANLGWDLGA 397

Query: 428 ---------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    I ++ + GI            I            +V+   G
Sbjct: 398 TAALCTVTSIVSDSLEGI------------IERVKSQAQPGTHVVIMSNG 435


>gi|147677148|ref|YP_001211363.1| folylpolyglutamate synthase [Pelotomaculum thermopropionicum SI]
 gi|146273245|dbj|BAF58994.1| folylpolyglutamate synthase [Pelotomaculum thermopropionicum SI]
          Length = 430

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 130/392 (33%), Gaps = 52/392 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISSFAQDNRLTTPSP 167
             + + GT+GK S A  +  I Q++G  +                I              
Sbjct: 43  KAIHIGGTNGKGSTAVMLAGILQKAGYRTGAFTSPHLHSFTERYRIDGACISRERIAELT 102

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQ------------------HRLDG---IKLIA 206
             +   L  +++ G    +   +   L                     R D    ++ + 
Sbjct: 103 GEMRPHLEAMAADGFERPTGFEAGTALAFLYFSREKVDYLVLEVGLGGRCDATNVVRPLL 162

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              TN+  DH +Y   + +     K  + +  +P  + A         + +         
Sbjct: 163 SVITNVSVDHQEYLGNSIREIAGEKAGIIKRGVPTVTAAA-------GEALEVIEDTCRK 215

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQ---VYNALVAAGL 321
           R   +   G+ +  + V      Q  TI  ++ K  D    L G  Q      A+ A  +
Sbjct: 216 RNSPLTVVGRDVRWEHVSLSEEGQCFTICGLKRKYEDIGISLLGRHQQVNAATAVAAVEV 275

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +G+D +            PGR E +    R   + +D AH       + + +     
Sbjct: 276 LMDLGVDISAGAVRAGLAARWPGRLEVM---RRKPLVIIDGAHNYEGARSLRRALADHFP 332

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR +V+     D D+ +  ++ ++A     + +   D+PR+   +++       +     
Sbjct: 333 GREMVLVIGMLD-DKERFKVVAELAPAARAVVVTRPDSPRAAKWQQLAVAARRHVREVYL 391

Query: 442 KGNRIEAIRTAIEMLNKQDVL-------VVAG 466
           +    EA+  A+ +   +D++       ++AG
Sbjct: 392 EELIEEAVEKALSLAGPEDLVCFTGSFYLIAG 423


>gi|317124646|ref|YP_004098758.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Intrasporangium
           calvum DSM 43043]
 gi|315588734|gb|ADU48031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Intrasporangium
           calvum DSM 43043]
          Length = 496

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 139/412 (33%), Gaps = 55/412 (13%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLS----LFASRLYG-KHPENILAVTGTSGKSSV 129
               L   S  +  + P+++   TR          A R+   +     L VTGT+GK++ 
Sbjct: 85  DDVELIITSPGVPPHDPLMLAAATRGLPVWGEVELAWRMRPLEGAAPWLTVTGTNGKTTT 144

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  I + SGL +   G   T                      + L  +    ++VE 
Sbjct: 145 VNMLASILRASGLRATSAGNVGT------------------PILEAVLHPEPYDVLAVEL 186

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L   R   I  +A +  N+  DH+D+H +   Y  AK ++++      +     AD
Sbjct: 187 SSFQLHWQR--SISAVASAVLNVAPDHLDWHGSYAEYLRAKGKIYDN--THLACVYNVAD 242

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--- 306
               + VM+     GCR +          +  V       +  +    +    L  L   
Sbjct: 243 IQTEQLVMEAEVVEGCRAVGFTTGIPAPSMIGVVDDVLADRAFVEQRQRSAAELCTLDDL 302

Query: 307 ------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                      + NAL AA L  A G+    V + L        R   V T  RG R   
Sbjct: 303 RGDAPSVAPHYLANALAAAALARAYGVGPLAVRDGLRAFRPDRHRIAEVAT-VRGVRWVN 361

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D   T+            +TS   +V    G  +      ++ ++A  L  + ++  D  
Sbjct: 362 DSKATNT-----HAAAAALTSFDSVVWIAGGLLKGADVDSLVEEVASRLRGVVLIGADRA 416

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGN-----RIEAIRTAIEMLNKQDVLVVA 465
           R      I   +    P    I+  +         +  A  + +  DV+++A
Sbjct: 417 R------IAEALARHAPDVPVIDLPDTDTGVMDLVVTHAARLAHPGDVVLLA 462


>gi|254518609|ref|ZP_05130665.1| FolC bifunctional protein [Clostridium sp. 7_2_43FAA]
 gi|226912358|gb|EEH97559.1| FolC bifunctional protein [Clostridium sp. 7_2_43FAA]
          Length = 432

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 141/407 (34%), Gaps = 48/407 (11%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--------I 147
           + T + L L  +         ++ + GT+GK S +S + ++    G             I
Sbjct: 23  ERTERLLELLGNPHKK---LKLIHIAGTNGKGSTSSILGKVLIEHGYKVGFFNSPHLEEI 79

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH---------------------VS 186
             T  ++               +   ++ +  +G  H                       
Sbjct: 80  EETIRVNDENIPEEDLVYLLEEIKPYVNKVVEEGYKHPTEFEVLTCIMFLYLYRQKVDFG 139

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAI 245
           V     G      + IK I    T++  DH +    T Q   N K  + ++ +P      
Sbjct: 140 VIEVGLGGRLDSTNVIKPILSIITSISLDHTNILGNTIQEITNEKAGIIKDAIP---VIT 196

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D     +  +A     + L++     F+ L+ V      Q+V+++     +     
Sbjct: 197 CNQKDEALYIIKNKALLTKSK-LTIVDSNDFVFLEIVNDDIPYQRVSVNFNNNKYTLDLA 255

Query: 306 LPGEFQVYNALVAAGLCIAI------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           L G+ Q+ N  +A      +       ++   + + ++ +    GR E +    +   I 
Sbjct: 256 LLGKHQIINLSLAIKALEELEKLNYIKVNINKLYKGVKNVKW-KGRLEVLK---KDPFIV 311

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +D AH    +E +  NI         +    G   D+    ++  IA    ++  VT ++
Sbjct: 312 IDGAHNIAGIEFLKSNIEEYF-KYKNLYLILGILADKNVEEMVKIIAPVATEVYTVTANS 370

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R+    +++  ++      I   +  +AI+ ++   NK D++V AG
Sbjct: 371 IRAASANELKEVVLEYNNNCIAFDDYDKAIKLSLSKANKDDLIVAAG 417


>gi|15836881|ref|NP_297569.1| UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa 9a5c]
 gi|9105095|gb|AAF83089.1|AE003881_2 UDP-N-acetylmuramate-L-alanine ligase [Xylella fastidiosa 9a5c]
          Length = 471

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 126/367 (34%), Gaps = 19/367 (5%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++P+ IA     +VV +A S  + +     ++    +          A R+      + L
Sbjct: 54  YLPEHIAADCAEVVVGNALSRGNAAVEALLDSGCRYISGP----QWLAERVL--PGRDTL 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           AV GT GK++  + +  + + +G +   +  G       S      L+  S   L     
Sbjct: 108 AVAGTHGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAGEV 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             + + +  V  +         R   +  +       NL  DH D      A       L
Sbjct: 168 STAVRPLFVVEADEYDTAFFDKRSKFVHYRPRVAILNNLEYDHADIFPDVAAIQRQFHHL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               +P     I+  +D    EV+  A      V   G+  +F    ++ A     + ++
Sbjct: 228 V-RTIPGRGRLIVNGEDQRLAEVL--AMGCWTPVERFGFDPEFHWSARLIAAD-GSRFSV 283

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG +     + L G   V N L A     A+G+  A V+  L +   V  R E +G  
Sbjct: 284 WHEGCEVGQVRWSLLGRHNVLNVLAALAAAHAVGVAPAAVIPSLTQFRSVKRRLECLGER 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLA 410
                +Y D+AH   ++   L+ +R       IVV                 +A  L  A
Sbjct: 344 G-AVTVYDDFAHHPTAIATTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAPSLQAA 402

Query: 411 DIAIVTD 417
           D  +  D
Sbjct: 403 DTVVFLD 409


>gi|257051689|ref|YP_003129522.1| dihydropteroate synthase [Halorhabdus utahensis DSM 12940]
 gi|256690452|gb|ACV10789.1| dihydropteroate synthase [Halorhabdus utahensis DSM 12940]
          Length = 813

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 139/397 (35%), Gaps = 50/397 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG---------------------- 141
           L A+        + + + G++GK S A  ++ + + +G                      
Sbjct: 28  LLAALDDPHESISAVQIAGSNGKGSTARMLEAVLREAGLDVGLYTSPHLDDVRERVRVNG 87

Query: 142 ---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVSVEASSHGL 194
                +  +     +  +A D      SP +       A      Q V    +E    G 
Sbjct: 88  RKIPKAALVEFIEEVEPYATDRAAAGDSPTFFETLTALAFWEFDRQNVDVAILEVGI-GG 146

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +  IA + T++  +H D         +   R    + P ++P +     A + 
Sbjct: 147 RYDATSVVDPIASAVTSVTLEHTDLLGD---TVDEIARDKAAVAPADAPLVT----AATG 199

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQV 312
           + +   H+    V+ +G   +   L       +  +  +T+S +G D +   PL GE Q 
Sbjct: 200 DALAAIHDEVEDVIRIGSPDEDADLTVEHGGRDGIESPITLSGQGLDVETRLPLLGEHQA 259

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            NA VAA L   +  +    +   L + H   GRFE +    R   + +D AH     E 
Sbjct: 260 RNAGVAAALARQVADVTDETLATGLRRAHWP-GRFEVL---DREPLVVLDGAHNPGGCER 315

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRA 430
           + + + T     + +V G   D+D          AL   D    T  D  R+ED + +  
Sbjct: 316 VAETLDTFEYDELHLVVGAMCDKDHHGIAD----ALPAPDHVTATHPDVDRAEDEQVVAH 371

Query: 431 EIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAG 466
                    ++ + +   A+   ++     D ++V+G
Sbjct: 372 AFESETAAEVQTRSDVAGALADTLDAAGPDDAVLVSG 408


>gi|307264124|ref|ZP_07545719.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306870540|gb|EFN02289.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 439

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 84/265 (31%), Gaps = 14/265 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 170 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSGGCILSAAADENVQNTLKMGSYSELQF 228

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 229 I-----GEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 283

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRII 385
           +  A   + L        R E V    +G  +Y D+AH   ++   +  +R  +   + I
Sbjct: 284 VSVAGACDALGSFINANRRLE-VKGEVKGITVYDDFAHHPTAIAATIDALRGKVGKEQRI 342

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKG 443
           +                 +IA  LAD   V    P +       I   +           
Sbjct: 343 LAVLEPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLTQPAKWS---A 399

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  E ++  +E     D ++V   G
Sbjct: 400 DLDELVKMIVEEAKPTDHILVMSNG 424


>gi|119713198|gb|ABL97266.1| UDP-N-acetylmuramate: L-alanyl-diaminopimelate ligase [uncultured
           marine bacterium EB0_50A10]
          Length = 435

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 90/272 (33%), Gaps = 26/272 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + + AV+GT GK++ +  +  I    G     +     IS     +       I++ +A 
Sbjct: 101 KRVFAVSGTHGKTTTSYMLTHIFLDQGKDIGFL--VGGISDNISGSASLGTDKIFVIEAD 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y S+           S                   N+  DH D     +        L 
Sbjct: 159 EYDSAFFDKRSKFIHYS------------PSTLIINNIEYDHADIFDGLKDIKKQFHHLL 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + ++P     I + DD  + +V+     +      +      I +          + T S
Sbjct: 207 K-IIPTSGNIIYFNDDPNTLDVINMGQWSNL----IKINDDKIQINYDLREMQVSEETFS 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++        PL GE    N + A       G+     +  L K   V  R EF G +S 
Sbjct: 262 LKN------MPLIGEHNFKNYISAILAAKTAGVAIEDSISSLLKFQGVKRRLEFKGLHSD 315

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             +IY D+AH   ++E   K IR       I+
Sbjct: 316 -VQIYDDFAHHPTAIEASSKAIRKQFPSNKIL 346


>gi|262371193|ref|ZP_06064514.1| hypothetical protein HMPREF0016_02984 [Acinetobacter johnsonii
           SH046]
 gi|262313923|gb|EEY94969.1| hypothetical protein HMPREF0016_02984 [Acinetobacter johnsonii
           SH046]
          Length = 455

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 111/362 (30%), Gaps = 29/362 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL    +                         
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLEPGFL----------------IGGVPLGFS 144

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L +     V  +         R   +          NL  DH D      A     
Sbjct: 145 ESARLGAGKYFCVEADEYDSAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQ 289
             L    +P E   I    ++   EV+++       V+    + +    L       +  
Sbjct: 205 HHLV-RTIPSEGRIIAPITESNIDEVLEQ--GCWTPVVRTSLEAQDKSELYAEQLSADGS 261

Query: 290 QVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +   G       + + G+  V NAL        +G+      E L     V  R E 
Sbjct: 262 HFKVLQHGVVKGTVQWNMTGQHSVANALATIAAAEHVGVSIETACEALSNFGGVKRRMEL 321

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIA 406
           +GT  RG  +Y D+AH   +++  L+   + +   ++  +          G        +
Sbjct: 322 LGT-VRGIEVYDDFAHHPTAIDTTLEGARKRLGERKLWAIIEPRSNTMRMGSHKDGLAHS 380

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             LAD  I     P   D   ++  I       +      + I T +    + D +V+  
Sbjct: 381 ARLADEVI--WYQPEGLD-WDLQPVIAAAPNKAVVARTLDDIIHTIVSDAGEGDAVVIMS 437

Query: 467 KG 468
            G
Sbjct: 438 NG 439


>gi|307248439|ref|ZP_07530460.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306855081|gb|EFM87263.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 439

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 85/269 (31%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 170 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSSGCILSAAADENVQNTLKMGSYSELQF 228

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 229 I-----GEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 283

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +  A   + L        R E V     G  +Y D+AH   ++   +  +R       RI
Sbjct: 284 VSVAGACDALGSFINANRRLE-VKGEVNGITVYDDFAHHPTAIAATINALRGKVGKEQRI 342

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFI 440
           + V          G        +L  A+   V         P+ I    + I   +    
Sbjct: 343 LAVLEPRSNTMKMGLHKEEIAPSLVDANAVFVYQ-------PDTIPWAVSVITDNLTQPA 395

Query: 441 E-KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   +  E ++  +E     D ++V   G
Sbjct: 396 KWSADLDEVVKMIVEEAKPTDHILVMSNG 424


>gi|46143515|ref|ZP_00135096.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 439

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 84/265 (31%), Gaps = 14/265 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 170 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSGGCILSAAADENVQNTLKMGSYSELQF 228

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 229 I-----GEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 283

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRII 385
           +  A   + L        R E V    +G  +Y D+AH   ++   +  +R  +   + I
Sbjct: 284 VSVAGACDALGSFINANRRLE-VKGEVKGITVYDDFAHHPTAIAATIDALRGKVGKEQRI 342

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKG 443
           +                 +IA  LAD   V    P +       I   +           
Sbjct: 343 LAVLEPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLTQPAKWS---A 399

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  E ++  +E     D ++V   G
Sbjct: 400 DLDELVKMIVEEAKPTDHILVMSNG 424


>gi|269302690|gb|ACZ32790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae LPCoLN]
          Length = 417

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 149/426 (34%), Gaps = 72/426 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S              +  I VV + +  L    +  + ++P     +TG++GK++  
Sbjct: 62  VIRSPGIKPYHPWVEQAVSLKIPVVTDIQVALK---TPEFQRYPS--FGITGSNGKTTTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F+  +    G+ +  +G                         L ++   GV    VE S
Sbjct: 117 LFLTHLLNTLGIPAIAMGNIGL-------------------PILDHMGQPGVRV--VEIS 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L         L    F N  R+H+DYH+   AYF+AK+R+ ++ L ++    ++ + 
Sbjct: 156 SFQLATQEEHIPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRI-QKCLRQDKTFWVWEEC 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +                    YQ   I+ +++  I +K                      
Sbjct: 215 SLGN----------------SYQ---IYSEEIEEILDKGDA------------LKPIYLH 243

Query: 311 QVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              N   A  L   +G +     L+ +        R E++G       I    A T  ++
Sbjct: 244 DRDNYCAAYALANEVGWVSPEGFLKAIRTFEKPAHRLEYLGEKDGVHYINDSKATTVTAV 303

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  +     G+ ++V   G D+  G  P +  +        I        E  + I 
Sbjct: 304 EKALMAV-----GKDVIVILGGKDKG-GDFPALASVLSQTTKHVIAM-----GECRQTIA 352

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             +   IP  + K +  EA+  A  +  + D ++++  G  +     + E++ +    +I
Sbjct: 353 DALSEKIPLTLSK-DLQEAVSIAQTIAQEGDTVLLS-PGCASFDQFQSFEERGAYFKLLI 410

Query: 490 REILGL 495
           RE+  +
Sbjct: 411 REMQAV 416


>gi|254516598|ref|ZP_05128657.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR5-3]
 gi|219675021|gb|EED31388.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR5-3]
          Length = 444

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 128/425 (30%), Gaps = 60/425 (14%)

Query: 60  IPQAIAQG--AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           +  A+++G  A   V+S     Q     +                   A R        +
Sbjct: 54  VGNALSRGNPAVEAVLSRGLRYQSGPQWLAEAV--------------LADRW-------V 92

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV+GT GK++ +S +  + + +GLS   +     I     +  ++           + L
Sbjct: 93  LAVSGTHGKTTASSMLAWLLEDAGLSPGFL-----IGGVPLNFGVS-----------ARL 136

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            S     +  +         R   +  +       NL  DH D +    A       L  
Sbjct: 137 GSGSFFVIEADEYDTAFFDKRAKFVHYRPRTLIVNNLEFDHADIYPDLAAIQRQFHHLL- 195

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P              +E+++         LS        +   + A        ++ 
Sbjct: 196 RCVPGNGRVFTPRAVPAVEEMLELGCWTPRETLSTEDSQADWYA--LLADTGGTHWQLNA 253

Query: 296 EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G +     +   G   V NAL A      +G+     +  L+    V  R E  G  S 
Sbjct: 254 PGGETLAVSWGQRGAHNVANALGACAAARHVGVTPKHAVNALQGFLGVRRRLELRGEVSN 313

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             R+Y D+AH   +++  L  ++     + ++                  +A   A    
Sbjct: 314 -IRVYDDFAHHPTAIKSTLAALQGAAGRKRVLAVIEPRSNTMRMGEHRSALAPSTAA--- 369

Query: 415 VTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG-- 468
              D      P+ +     ++I            I+A +   ++     D +VV   G  
Sbjct: 370 --ADEVFWYQPKALGWSLEDVIDSSAVPASISEDIDALVARIVDHALPGDDVVVMSNGAF 427

Query: 469 ---HE 470
              HE
Sbjct: 428 GGIHE 432


>gi|154252861|ref|YP_001413685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156811|gb|ABS64028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parvibaculum
           lavamentivorans DS-1]
          Length = 467

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 85/269 (31%), Gaps = 28/269 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TGT+GKS+  + +  + +R G  +   G                         L
Sbjct: 112 AKVVAITGTNGKSTTTALIGHMVRRCGGDAQVGGNIG-------------------KAVL 152

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +    +   VE SS+ +D      +        N+  DHID H T + Y + K R+F
Sbjct: 153 ELEAPSASSVYVVEVSSYQIDLA--PSLAPHIAVLLNITPDHIDRHGTVEHYADVKARIF 210

Query: 235 EELLPKESPAIIYAD----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                 ++  I   +    D  ++E  +R        +          L  V       Q
Sbjct: 211 ARQTAADTAVIGIDERRSSDICTRESARRVEKVVPVSVGKALSRGVYALDGVLYDSTGTQ 270

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              + +  D   +  L G     NA  A     A+G     +    E    +  R E V 
Sbjct: 271 ---TAKAGDLRTIKTLAGAHNWQNAAAAYAAGRALGYQRERIFAAFESFPGLAHRMEIVA 327

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                  +    A  +++    L     I
Sbjct: 328 EAEGVRFVNDSKATNADAASKALGTYDNI 356


>gi|322515501|ref|ZP_08068487.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Actinobacillus ureae
           ATCC 25976]
 gi|322118468|gb|EFX90719.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Actinobacillus ureae
           ATCC 25976]
          Length = 454

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 85/267 (31%), Gaps = 18/267 (6%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 185 IINNIEFDHADIFDDLKAIQRQFHHLI-RTMPSSGCILSAAADENVQNTLKMGSYSELQF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + GE  ++NAL+        G
Sbjct: 244 I-----GEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGEHNMHNALMTIAAAHHAG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +  A   E L        R E V     G  +Y D+AH   ++   +  +R       RI
Sbjct: 299 VSVAGACEALGSFINANRRLE-VKGEVNGITVYDDFAHHPTAIAATIDALRGKVGKEQRI 357

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDN--PRSEDPEKIRAEIIHGIPGFIE 441
           + V          G       ++L  A+   V   +  P S     +  + +     +  
Sbjct: 358 LAVLEPRSNTMKMGVHKEEIALSLGDANAVFVYQPDTIPWS---VSVITDSLSQPAAWSA 414

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  E +   I+     D ++V   G
Sbjct: 415 NLD--ELVALVIKEAKPNDHILVMSNG 439


>gi|126208913|ref|YP_001054138.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae L20]
 gi|126097705|gb|ABN74533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 454

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 84/265 (31%), Gaps = 14/265 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 185 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSGGCILSAAADENVQNTLKMGSYSELQF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 244 I-----GEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRII 385
           +  A   + L        R E V    +G  +Y D+AH   ++   +  +R  +   + I
Sbjct: 299 VSVAGACDALGSFINANRRLE-VKGEVKGITVYDDFAHHPTAIAATIDALRGKVGKEQRI 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKG 443
           +                 +IA  LAD   V    P +       I   +           
Sbjct: 358 LAVLEPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLTQPAKWS---A 414

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  E ++  +E     D ++V   G
Sbjct: 415 DLDELVKMIVEEAKPTDHILVMSNG 439


>gi|302754970|ref|XP_002960909.1| hypothetical protein SELMODRAFT_402370 [Selaginella moellendorffii]
 gi|300171848|gb|EFJ38448.1| hypothetical protein SELMODRAFT_402370 [Selaginella moellendorffii]
          Length = 499

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 129/430 (30%), Gaps = 74/430 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VVSSA   ++          + V+  T ++L              ++AV GT GKS+ 
Sbjct: 99  AVVVSSAIPAENEEVVAARRRGLRVIKRT-EWLGEITEDY------ELIAVAGTHGKSTT 151

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  + Q                SF+ D      + +      +    +G   V    
Sbjct: 152 TAMLAVVLQ----------------SFSDDITAIVGADVPQLAGGNMAYGKGGRFVLEAD 195

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G       G+       T++  +H+D     +A      + F   +  +   II  D
Sbjct: 196 EYDGCFL----GVSPSLAIVTSVEWEHVDMFPD-EASVREMFKHFISRIKPDGCLIICGD 250

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                           R+L   +      +    +   +    +            LPG 
Sbjct: 251 ----------------RLLGNSHMAFTNKMIGEQSCLCQTSWAVYRNRPMARVSLKLPGT 294

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEK-----------------LHVVPGRFEFVGTN 352
           + V N+L        +        +   +                    +  RFE+VGT 
Sbjct: 295 YNVLNSLAVLAAVSLLAFKGKGSCDESGQLKAMAVAAQAASSALQSFQGLRRRFEYVGTV 354

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            R   IY DYAH    +  +L+  R       I VVF         K       A   A+
Sbjct: 355 RR-CDIYDDYAHHPTEVRAVLQAARQRFDKQPIWVVFQPHTHSRIAKLLQDFAPAFSGAN 413

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR------TAIE--MLNKQD--V 461
                 +N   +        +I G P  +      E I       TA+E   +NK    V
Sbjct: 414 RIFSARENNVWKLSGADLVSVITG-PPAMFIPTLDEVIERLSWELTALEENEVNKGGNIV 472

Query: 462 LVVAGKGHET 471
           L+  G G  T
Sbjct: 473 LLTLGAGDVT 482


>gi|225387337|ref|ZP_03757101.1| hypothetical protein CLOSTASPAR_01090 [Clostridium asparagiforme
           DSM 15981]
 gi|225046549|gb|EEG56795.1| hypothetical protein CLOSTASPAR_01090 [Clostridium asparagiforme
           DSM 15981]
          Length = 448

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 105/336 (31%), Gaps = 47/336 (13%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EAS 190
            +  + + +G     +G                        A  +L   G     V E S
Sbjct: 121 LLYHVLKSAGQDCVVMGNIG-------------------IPAFDHLEEIGPDTRIVFELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            H L+   +       G   N+  +H+D++ T + Y  AK R+F      +         
Sbjct: 162 CHQLEYMTVS---PHIGVLINIHEEHLDHYGTMEKYVAAKHRIFRNQDSDDILVCNM--- 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
               + +        R++ VG       +       N   V          +    L G+
Sbjct: 216 ----QCLPEPGECPSRLIRVGTNRPDADVNVDNCGENGTFVDYGCRRYRIPETEIRLLGQ 271

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              ++  V   +C  +GI  A   E L+    +P R +++G    G + Y D   T    
Sbjct: 272 HNYFDIAVVYAVCGLLGIGEAAFTEGLKSYEPLPHRLQYLG-QRDGVKYYDDSISTI--C 328

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              ++ ++T+T      V   G DR      ++  ++       ++ +   R      I 
Sbjct: 329 ATTIQALKTLTDAD--TVLIGGMDRGIDYGELIQFLSGSPIPHIVLMEATGRR-----IY 381

Query: 430 AEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            EI        G    I   +  EA+R A  +    
Sbjct: 382 EEIGRDYPEFAGRDRLILADHLEEAVRAARSVTRPG 417


>gi|257389186|ref|YP_003178959.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286]
 gi|257171493|gb|ACV49252.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286]
          Length = 817

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 139/402 (34%), Gaps = 42/402 (10%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-------- 147
             T    SL A         + + + G++GK S A  V++  + +GL             
Sbjct: 20  PGTEATRSLLAQLGDPHDSLDCVQIAGSNGKGSTARMVERTLREAGLDVGLYTSPHLDDV 79

Query: 148 -------GPTSTISSF---------AQDNRLTTPSPIYLAKALSYLSSQGVT----HVSV 187
                  G   T S+             +R    +   L + L+ L+          V+V
Sbjct: 80  RERIRVNGRKITESAIVEFVESVEPYVTDRAADGTSPTLFETLTALAYWEFERQSVDVAV 139

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                G        +  +A + T +  +H D             R    + P + P +  
Sbjct: 140 IEVGIGGKLDATSVVDPVASAVTTVTLEHTDILGDTVG---EIARDKAHVAPADRPLVTA 196

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +      V   A +      +   +   + +        +  V+I+ +    +   PL 
Sbjct: 197 TEGDALDAVRDVAGDVVTVADTADGEAGDVSVTDHGREGLEGSVSIAGDEWGVETKLPLL 256

Query: 308 GEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           G  Q  NA +AA LC  +  +D A +   L   H   GRFE +G   R   + +D AH  
Sbjct: 257 GAHQAINAGIAATLCRQVSDVDEATIARGLRNAHWP-GRFEIMG---RDPLVVLDGAHNP 312

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDP 425
             +E +++ +       + VV G   D+D          ALD AD  +  + D  R+ED 
Sbjct: 313 GGVERVVETLAAFDYDELHVVAGSMVDKDLRAIAG----ALDGADHVVACEPDRDRAEDE 368

Query: 426 EKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAG 466
           + +           +E + +   A   A++   + D ++V G
Sbjct: 369 QVVAKAFRDETAASVETRSDVAGAFDVALDGAGEDDCVLVTG 410


>gi|190150723|ref|YP_001969248.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915854|gb|ACE62106.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 454

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 84/265 (31%), Gaps = 14/265 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 185 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSGGCILSAAADENVQNTLKMGSYSELQF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 244 I-----GEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRII 385
           +  A   + L        R E V    +G  +Y D+AH   ++   +  +R  +   + I
Sbjct: 299 VSVAGACDALGSFINANRRLE-VKGEVKGITVYDDFAHHPTAIAATIDALRGKVGKEQRI 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKG 443
           +                 +IA  LAD   V    P +       I   +           
Sbjct: 358 LAVLEPRSNTMKMGVHKEEIAPSLADANAVFVYQPDTIPWAVSVITDNLTQPAKWS---A 414

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  E ++  +E     D ++V   G
Sbjct: 415 DLDELVKMIVEEAKPTDHILVMSNG 439


>gi|303252423|ref|ZP_07338588.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-
           medo-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302648696|gb|EFL78887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-
           medo-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 454

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 85/269 (31%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 185 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSSGCILSAAADENVQNTLKMGSYSELQF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 244 I-----GEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +  A   + L        R E V     G  +Y D+AH   ++   +  +R       RI
Sbjct: 299 VSVAGACDALGSFINANRRLE-VKGEVNGITVYDDFAHHPTAIAATINALRGKVGKEQRI 357

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFI 440
           + V          G        +L  A+   V         P+ I    + I   +    
Sbjct: 358 LAVLEPRSNTMKMGLHKEEIAPSLVDANAVFVYQ-------PDTIPWAVSVITDNLTQPA 410

Query: 441 E-KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   +  E ++  +E     D ++V   G
Sbjct: 411 KWSADLDEVVKMIVEEAKPTDHILVMSNG 439


>gi|71897743|ref|ZP_00679969.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Ann-1]
 gi|71732298|gb|EAO34352.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xylella fastidiosa Ann-1]
          Length = 471

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 127/367 (34%), Gaps = 19/367 (5%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++P+ IA     +VV +A S  + +     ++    +          A R+      + L
Sbjct: 54  YLPEHIAADCAEVVVGNALSRGNAAVEALLDSGCRYISGP----QWLAERVL--PGRDTL 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           AV GT GK++  + +  + + +G +   +  G       S      L+  S   L     
Sbjct: 108 AVAGTHGKTTTTTILAWLLEAAGRAPGFLIGGVPENFGVSARLGGVLSQGSMDPLVAGEV 167

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             + + +  V  +         R   +  +       NL  DH D      A       L
Sbjct: 168 SAAVRPLFVVEADEYDTAFFDKRSKFVHYRPRVAILNNLEYDHADIFPDVAAIQRQFHHL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               +P     I+  +D    EV+  A      V   G+  +F    ++ A     + ++
Sbjct: 228 V-RTIPGRGRLIVNGEDQRLAEVL--AMGCWTPVERFGFDLEFHWSARLIAAD-GSRFSV 283

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG +     + L G   V NAL A     A+G+  A V+  L +   V  R E +G  
Sbjct: 284 WHEGCEVGQVSWSLLGRHNVLNALAALAAAHAVGVAPAAVIPSLAQFRSVKRRLECLGER 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLA 410
                +Y D+AH   ++   L+ +R       IVV                 +A  L  A
Sbjct: 344 G-AVTVYDDFAHHPTAIATTLEGLRANVGDARIVVAIEMRSHSMRLGAHAQALAPSLQAA 402

Query: 411 DIAIVTD 417
           D  +  D
Sbjct: 403 DTVVFLD 409


>gi|55376924|ref|YP_134775.1| dihydropteroate synthase [Haloarcula marismortui ATCC 43049]
 gi|55229649|gb|AAV45069.1| dihydropteroate synthase [Haloarcula marismortui ATCC 43049]
          Length = 799

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 146/426 (34%), Gaps = 60/426 (14%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +   D+  +++   P L  D T + LS       G      +A  G++GK S A   + +
Sbjct: 4   HESADYLQSLQRRRPKLGTDTTARMLSHLGD-PDGSFDSVQIA--GSNGKGSTARMTESV 60

Query: 137 CQRSGLSSFQIGPTS--------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVT----- 183
            + +GL                 T++         T     +   ++ L+++        
Sbjct: 61  LRAAGLDVGLFTSPGLNGFREQITVNGGRVPKARVTEFVEQIEPCINQLAAEDDKPTHFE 120

Query: 184 --------HVSVEASSHGLDQHRLDG-------IKLIAGSFTNLGRDHIDYHQ-TQQAYF 227
                   H  VE     + +  + G       +  +A + T++  +H D    T +   
Sbjct: 121 VLTALALYHFDVEDVDVAVLEVGIGGRYDATSAVDPVASAVTSISLEHTDLLGDTIEEIA 180

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIH 286
             K ++     P  +     A D         A       ++VG +   +   +      
Sbjct: 181 RDKGQVAPSDAPLVTGTAGAALD---------AIQEITDTITVGSEAADVTATENGMRSA 231

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGR 345
            + +++++      +    L G+ Q  NA VAA L   +  +D+  + E L +   +PGR
Sbjct: 232 VENRISLTGSNWALESNLKLLGQHQAENAGVAATLARQLIDVDTETISEGL-RAATLPGR 290

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-----P 400
           FE   T+     + +D +H   ++E +   I       + VVF    D++  +       
Sbjct: 291 FEVRSTD---PMVVLDGSHNPGAMETLTTLIGRYEYDDLHVVFAAMQDKEYEQMIATLPA 347

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +    A   A          R+   E + A          +  +  EA   AI    + D
Sbjct: 348 VETAFATRPAVD--------RAASTESLAAAFEGQAAQIQQVESVPEATERAIATAGEDD 399

Query: 461 VLVVAG 466
            ++VAG
Sbjct: 400 FVLVAG 405


>gi|50086604|ref|YP_048114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acinetobacter sp. ADP1]
 gi|49532578|emb|CAG70292.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter sp. ADP1]
          Length = 453

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 106/365 (29%), Gaps = 36/365 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +++L V GT GK++  + +  +  ++GL+   +                         
Sbjct: 101 QGKHVLGVAGTHGKTTTTTMLAWVLDQAGLNPGFL----------------IGGVPLGFS 144

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             + L       V  +         R   +          NL  DH D      A     
Sbjct: 145 ESARLGDGKYFCVEADEYDSAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQF 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L    +P E   I    +    +V+  A      V+    +     +       +   
Sbjct: 205 HHLV-RTIPSEGCIITPVTETNIDDVL--AMGCWTPVVRTSLKANDAQISAEQLCSDGSH 261

Query: 291 VTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             +   G    +  + + G+  V NAL        +G+      E L     V  R E +
Sbjct: 262 FKVLEHGVVQGEVKWNMTGQHSVANALATIAAAQHVGVTIEQACEALSNFGGVKRRMELL 321

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIAL 407
            T  RG  +Y D+AH   ++E  L+   + +   R+  +          G        + 
Sbjct: 322 DT-VRGVEVYDDFAHHPTAIETTLEGARKRLGERRLWAIIEPRSNTMRMGSHKEGLAHSA 380

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR----IEAIRTAIEMLNKQDVLV 463
            LAD  I          PE +  ++   I              + I    +     D +V
Sbjct: 381 RLADEVI-------WYQPEGLDWDLQPVIDAATNHAQVSRSLEDIIHRITQEAADGDAVV 433

Query: 464 VAGKG 468
           +   G
Sbjct: 434 IMSNG 438


>gi|313674242|ref|YP_004052238.1| cytoplasmic peptidoglycan synthetase domain protein [Marivirga
           tractuosa DSM 4126]
 gi|312940940|gb|ADR20130.1| cytoplasmic peptidoglycan synthetase domain protein [Marivirga
           tractuosa DSM 4126]
          Length = 457

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 112/340 (32%), Gaps = 39/340 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  + + G+ GKSS+ + +  + + +G +   +   + I  F       + + I + +  
Sbjct: 108 KQRIVIGGSHGKSSITAMIMHVLKSAGKTFDYL-VGAEIEGFDL-TVQISDAAIIIIEGD 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            YLSS+           H              G  + +  DH +   T + Y   +  LF
Sbjct: 166 EYLSSKLDPQPKFLKYDH------------HIGVISGIKWDHKNVFPTFEDYTK-QFDLF 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +  PK    I   +D  +  V  +      ++    +  +  +           +V I+
Sbjct: 213 ADKTPKAGSLIYCEEDNLANIVGAKEREDVRKIPYAAHDAEIKNGITYLKTKEHGEVKIN 272

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V GK             + N   A  +C  +G+ +      +        R E +  N  
Sbjct: 273 VFGK-----------HNLQNIKAAQEVCDILGVPADKFYAAITSFKGAKNRLELLAEN-N 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADI 412
             R+Y DYAH  + L+  +  +        I +           R  + +    L  AD+
Sbjct: 321 DVRVYKDYAHAPSKLKATVNALHHQFKHGEICIAYELHTFSSLDREFLKEYKDTLKHADV 380

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           A V   NP +   E             + + +  EA   A
Sbjct: 381 AFVY-INPANLKIEG---------DNKLTEADLKEAFNKA 410


>gi|107103535|ref|ZP_01367453.1| hypothetical protein PaerPA_01004605 [Pseudomonas aeruginosa PACS2]
 gi|116054451|ref|YP_789099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589672|gb|ABJ15687.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 451

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 131/409 (32%), Gaps = 48/409 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++  
Sbjct: 65  VVIGNALSRGNPAVEHVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     +      +     +P ++ +A  Y S+           
Sbjct: 119 SMLAWVLEHAGMSPGFL--IGGVPQNFGVSARLGGTPFFVVEADEYDSAFFDKRSKFVHY 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I  + +
Sbjct: 177 ------------RPRTAILNNLEFDHADIFPDLAAIERQFHHLV-RTVPGEGLIIRPSAE 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGE 309
              + V+         V + G  G++   +      +  +  +  +G    +  +PL G 
Sbjct: 224 KALERVLGM--GCWTPVQTTGEGGQW---QARLLAEDGSRFEVLFDGIVQGEVDWPLTGL 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL +      +G+  +     L +   V  R E V    RG  +Y D+AH   ++
Sbjct: 279 HNVANALASLAAARHVGVVPSQGAAALSEFRNVKRRMEKV-AEVRGVTLYDDFAHHPTAI 337

Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI------VTDDNP 420
              L  +R         I +V         G        ++  AD  +      +  D  
Sbjct: 338 ATTLDGLRKQVGADTQVIAIVEPRSNSMKLGAHRDGLPDSVRQADQVLWYAPPNLGWDLA 397

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
            +     I +++           + +EA I    +       +V+   G
Sbjct: 398 ATAAQCAIPSQVC----------DTLEAIIEQVRQQARPGAQVVIMSNG 436


>gi|93007167|ref|YP_581604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychrobacter
           cryohalolentis K5]
 gi|118595677|sp|Q1Q883|MURD_PSYCK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|92394845|gb|ABE76120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychrobacter
           cryohalolentis K5]
          Length = 471

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 116/327 (35%), Gaps = 45/327 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   SL + +        I VV + + F               I+A+TG++ KS
Sbjct: 76  AARIIISPGISLDNVAIAAARAANIPVVSDIQLF--------CEACTVPIVAITGSNAKS 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V Q+   +G++    G                        ALS LS++ +    +
Sbjct: 128 TVTTLVGQMAADAGINVGVGGNIGV-------------------PALSLLSNKEMELAVI 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +  +     +  N+  DH+D H     Y  AK R+F+         +I 
Sbjct: 169 ELSSFQLE--TVTNLGAQVATVLNMSPDHLDRHGDMLGYHQAKHRIFQG----AKSVVIN 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LF 304
            +DA ++ ++  +       LS G          +      Q  T    G +        
Sbjct: 223 REDALTRPLVSDSLPR----LSTGIHAPNKGHYGLITDTAGQ--TYLARGTERLISADKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   + NA  A  L    G+   ++L  L++   +  R ++V T +           
Sbjct: 277 KIKGRHNLLNAQAALALGELAGLPLEIMLITLQQFAGLEHRCQYVSTVAGIDYFNDSKGT 336

Query: 365 TSNSLEMI---LKNIRTITSGRIIVVF 388
              S       L  +     G+++++ 
Sbjct: 337 NIGSTMAAVEGLGAVYAPKDGKLLLIL 363


>gi|307244817|ref|ZP_07526916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253771|ref|ZP_07535625.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258228|ref|ZP_07539971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260467|ref|ZP_07542162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306854262|gb|EFM86468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863255|gb|EFM95195.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867688|gb|EFM99533.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869870|gb|EFN01652.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 436

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 137/395 (34%), Gaps = 58/395 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +L         N  + VV +   F+              I+A+TG +GKS+V 
Sbjct: 70  IVISPGLALATPEIQQAINAGMEVVGDIELFVREA--------KAPIIAITGANGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +++G+     G                         LS L+ +      +E S
Sbjct: 122 TLVTEMAKQAGIKVGMGGNIGV-------------------PVLSLLNDE-YELFVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++         I+  +
Sbjct: 162 SFQLE--TTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN----VIVNGE 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +  +  +A     R      +    +  +   +++     I  +         + G 
Sbjct: 216 DRLTYPLETQAVKKLIRF----AEHNAEYTMRNGILYSGDDAIIPTK------EMLISGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N+L A  L  A GI    +++ L+    +  RF+ V TN     +    A    S 
Sbjct: 266 HNEMNSLAAMALAEAAGIPREGIVKALQVYGGLNHRFQAVKTNDGVRWVNDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++   +G + ++   G  +      +   I            D           
Sbjct: 326 VAALNGLQ--VAGTLYLLL-GGDGKAADFSELKPLINKPNIVCYCFGQDG---------- 372

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A++       +      +AI      L K D++++
Sbjct: 373 AQLAALSSQSVLVETMQQAIEQIRPQLKKGDMVLL 407


>gi|154505722|ref|ZP_02042460.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
 gi|153794019|gb|EDN76439.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
          Length = 452

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH++ H T +AY  AK ++ +    ++   + Y
Sbjct: 166 EMSSFQLE--TIHTFCPKVSAILNITPDHLNRHHTMEAYIEAKEQIAKNQTEEDVCVLNY 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  +++  +R         S     K I+L+    I+ ++      E         L 
Sbjct: 224 EDD-VTRKFGERVKAQVIYFSSRRRLEKGIYLEDGNIIYCREN----PEKVCHVDELKLL 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  +  A  +   ++ + + +   V  R EFV   +             +
Sbjct: 279 GMHNYENVMAAVAMAAAYHVPMEIIRKTIREFTAVEHRIEFVAEKNGVAYYNDSKGTNPD 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++ +   T      + G G D+D      +      +  + ++          EK
Sbjct: 339 AAIKGIQAMNRPT-----FLIGGGYDKDSSYDEWIQSFDGKVKKLVLL------GATKEK 387

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       G    I      EA+   +E     D +++
Sbjct: 388 INETAKRLGFTDTILADTFEEAVNICVEQAEPGDAVLL 425


>gi|53729121|ref|ZP_00134085.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207504|ref|YP_001052729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae L20]
 gi|307249215|ref|ZP_07531212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|126096296|gb|ABN73124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|306858739|gb|EFM90798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 436

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 137/395 (34%), Gaps = 58/395 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +L         N  + VV +   F+              I+A+TG +GKS+V 
Sbjct: 70  IVISPGLALATPEIQQAINAGMEVVGDIELFVREA--------KAPIIAITGANGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +++G+     G                         LS L+ +      +E S
Sbjct: 122 TLVTEMAKQAGIKVGMGGNIGV-------------------PVLSLLNDE-YELFVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++         I+  +
Sbjct: 162 SFQLE--TTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN----VIVNGE 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +  +  +A     R      +    +  +   +++     I  +         + G 
Sbjct: 216 DRLTYPLETQAVKKLIRF----AEHNAEYTMRNGILYSGDDAIIPTK------EMLISGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N+L A  L  A GI    +++ L+    +  RF+ V TN     +    A    S 
Sbjct: 266 HNEMNSLAAMALAEAAGIPREGIVKALQVYGGLNHRFQAVKTNDGVRWVNDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++   +G + ++   G  +      +   I            D           
Sbjct: 326 VAALNGLQ--VAGTLYLLL-GGDGKAADFSELKPLINKPNIVCYCFGQDG---------- 372

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A++       +      +AI      L K D++++
Sbjct: 373 AQLAALSSQSVLVETMQQAIEQIRPQLKKGDMVLL 407


>gi|327404522|ref|YP_004345360.1| FolC bifunctional protein [Fluviicola taffensis DSM 16823]
 gi|327320030|gb|AEA44522.1| FolC bifunctional protein [Fluviicola taffensis DSM 16823]
          Length = 415

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 72/391 (18%), Positives = 133/391 (34%), Gaps = 72/391 (18%)

Query: 112 KHPENILAV---TGTSGKSSVASFVQQICQRSGLS------------------------- 143
            HPE  L      GT+GK SV++ +  I   SG +                         
Sbjct: 40  NHPEEKLRFIHVGGTNGKGSVSNMLASILTESGETVGLFTSPHLFDFTERIRINGNPIDN 99

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F I     + + +     +    I    AL Y      + V  E    G      + I+
Sbjct: 100 QFVIDFCEKVQNHSWSIEPSFFE-ITWMMALDYFHQNNCSIVIAEVGL-GGRLDATNIIQ 157

Query: 204 LIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            I    TN+G DHI+    T+      K  + ++ +P     I   D          A+ 
Sbjct: 158 PIISVITNIGLDHINILGDTRTKIAFEKAGIIKQNIP---VVIGEVDSETFPVFEATANE 214

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              R++   +Q                             L      +Q+ N  + + +C
Sbjct: 215 RNSRIIIPLHQDSS--------------------------LPKGIIGYQIGNYSIVSAVC 248

Query: 323 IAI---GIDSALVLE--HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             +   G      +    +  L    G F  +   +      VD AH +  + +++K+I+
Sbjct: 249 DYLEEQGFSCNQPIRENGILNLKANTGFFGRMEIINHSPLTIVDCAHNAEGIHVLMKSIQ 308

Query: 378 TITSGRIIVVFGCGGDR--DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +  GR+  ++G   D+  +     +  + A         T +NPRS   E++  ++   
Sbjct: 309 EVNKGRLHCIYGTSSDKNLETIIHELPAEAA-----YYFTTFENPRSLSFEELTQKMTPR 363

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I       + I+A++ A E +NK D +++ G
Sbjct: 364 IKKATFFDSPIKALKKAQETVNKSDTILIFG 394


>gi|167036439|ref|YP_001664017.1| hypothetical protein Teth39_0008 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751448|ref|ZP_05492326.1| protein of unknown function DUF1727 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320114865|ref|YP_004185024.1| hypothetical protein Thebr_0008 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855273|gb|ABY93681.1| domain of unknown function DUF1727 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749667|gb|EEU62693.1| protein of unknown function DUF1727 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319927956|gb|ADV78641.1| domain of unknown function DUF1727 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 451

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 110/359 (30%), Gaps = 64/359 (17%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +N + +TGT+GK++ +  +  I   SG S       + + +      +   +       L
Sbjct: 48  DNKVIITGTNGKTTTSGLIAHILTTSGKSVVHNKEGANMKTGIATTLIKNSN------FL 101

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA-YFNAKMRL 233
             L          EA+   + +     IK      TN  RD +D +          K  L
Sbjct: 102 GNLIKDAAVFEIDEANMPIVIED----IKPNIVIITNFFRDQLDRYGELDTTVEKVKKAL 157

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRA------------------------------HNA 263
            +  LP+ES  ++ AD+ ++  +                                  H  
Sbjct: 158 LK--LPQESIVLLNADEPFTASIGDEIKSKVFYYGIEDNIEGINSSSFEQKYCPICGHKY 215

Query: 264 GCRVLSVGYQGKFIH-------------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             R +  G  G +                  +    +     +  + K F     L G +
Sbjct: 216 EYRRIYYGQLGDYYCPNCGKKRPNSHFKATNIFLNEDGINFNLYYKDKIFTVKSRLIGLY 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            VYN L A    I + ID   +L+  E    + GR +     ++  +  ++        E
Sbjct: 276 NVYNLLAAISAGILLNIDFNTILKATESYWPIEGRLQKTKIKNK--KAIINLIKNPIGFE 333

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDNPRSED 424
             L  +        +++       D      +  + L+          I+T    R+ED
Sbjct: 334 STLNMLSQFNKPLNLLISINDNYADGRDVSWLWDVNLEDFLSKTKVNYIITS-GLRAED 391


>gi|307257474|ref|ZP_07539241.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864054|gb|EFM95970.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 439

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 85/264 (32%), Gaps = 12/264 (4%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 170 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSGGCILSAAADENVQNTLKMGSYSELQF 228

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 229 I-----GEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 283

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRII 385
           +  A   + L        R E V     G  +Y D+AH   ++   +  +R  +   + I
Sbjct: 284 VSVAGACDALGSFINANRRLE-VKGEVNGITVYDDFAHHPTAIAATINALRGKVGKEQRI 342

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KIRAEIIHGIPGFIEKGN 444
           +                 +IA  L D   V    P +      +  + +  +  +    +
Sbjct: 343 LAVLEPRSNTMKMGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQLAKW--SAD 400

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
             E ++  +E     D ++V   G
Sbjct: 401 LDELVKMIVEEAKPTDHILVMSNG 424


>gi|261854928|ref|YP_003262211.1| UDP-N-acetylmuramate [Halothiobacillus neapolitanus c2]
 gi|261835397|gb|ACX95164.1| UDP-N-acetylmuramate [Halothiobacillus neapolitanus c2]
          Length = 455

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 115/359 (32%), Gaps = 35/359 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +L V GT GK++ +S +  I +++G++   +     +      +     +P ++ +A  Y
Sbjct: 104 VLGVAGTHGKTTTSSMLAWILEQAGMAPGFL--IGGVPGNFGVSARLGETPFFVIEADEY 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++                       +       NL  DH D      A        F  
Sbjct: 162 DTAFFDKRSKFLHY------------RPRGVILNNLEFDHADIFPDLAAIERQFAH-FLR 208

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+P +   ++       + V+++   +           +   L         Q +     
Sbjct: 209 LVPNKGLVVMADATPALERVVEQGCWSPIERFGARDSAQPWRLVGEAIWLEGQHL----- 263

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               D    + G     NAL A  L    G+     L  L     V  R +  GT + G 
Sbjct: 264 ---GDMPANIIGRHNRLNALAALALARFAGVPPEQGLNALAGFVGVARRLQNRGTVA-GV 319

Query: 357 RIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCG-GDRDQGKRPIMGKIALDLA 410
            ++ D+AH   ++   +  +R        SGR+I V          G        AL  A
Sbjct: 320 TVFDDFAHHPTAIIETIAALREQQSASPHSGRLIAVVDPRSNTMRAGVHQHQLAEALAGA 379

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKG 468
           D+ +          P     E +  +   I     ++A+ T  + +    D ++V   G
Sbjct: 380 DLVVFHSPANLGWSP----REALASLGTRIRFSPTVDAVLTDVLALAQPDDKILVMSNG 434


>gi|261418347|ref|YP_003252029.1| FolC bifunctional protein [Geobacillus sp. Y412MC61]
 gi|319767694|ref|YP_004133195.1| FolC bifunctional protein [Geobacillus sp. Y412MC52]
 gi|261374804|gb|ACX77547.1| FolC bifunctional protein [Geobacillus sp. Y412MC61]
 gi|317112560|gb|ADU95052.1| FolC bifunctional protein [Geobacillus sp. Y412MC52]
          Length = 431

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 120/360 (33%), Gaps = 54/360 (15%)

Query: 113 HPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQI---------------GPTSTIS 154
           HPE  +    + GT+GK S  ++++ I Q +G S                   G      
Sbjct: 36  HPERRVRAVHIGGTNGKGSTVAYLRSILQAAGYSVGTFTSPYVEQFNERISINGQPIRDE 95

Query: 155 SFAQDNRLTTPSPIYLAK---------------ALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +  +   P    L +                L Y   Q +  + +     G      
Sbjct: 96  EIVELVQTIKPLADELEQTELGGPTEFEVITAMMLYYFGKQNIQDIVLIEVGLGGRLDST 155

Query: 200 DGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + I  +    TN+  DH++    T       K  + +  +P  +      +      + K
Sbjct: 156 NIIYPLLSVITNVSYDHMNILGDTLDQIAAEKAGIIKSGIPLVTAV---NEPEAWDVIAK 212

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALV 317
            A     +   +G       +    A    +Q ++     ++ D    +PG  QV NA V
Sbjct: 213 TAAERKAKTYRLGV---DFTVSDRQATVEGEQFSLVTPFAEYRDLRIQMPGAHQVENAAV 269

Query: 318 AAGLC--IAIG----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           A      + +G    ID   + + L       GRFE V   S    I +D AH    +  
Sbjct: 270 AVMAAELLRLGYSFLIDPEHIADGLATAAWP-GRFERV---SDSPLIILDGAHNEAGIRS 325

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
           +++ +R     + + V          +R I  ++  +LAD    T  D PR+   E++  
Sbjct: 326 LVETVRAHYPDKHVHVLFAALTDKPLERMI--QLLDELADTITFTTFDFPRAAAAEQLAD 383


>gi|323144096|ref|ZP_08078736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
 gi|322416111|gb|EFY06805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
          Length = 440

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 104/306 (33%), Gaps = 27/306 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + +LAV GT GK++  + +  I + + L+   +     I      +   T SP ++ +A 
Sbjct: 91  KKVLAVAGTHGKTTTTAMLAWILEANNLNPGFL--VGGIPENFGYSARATESPYFVIEAD 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            Y  +                               NL  DH D   +          L 
Sbjct: 149 EYDCAFFDKRSKFLHYH------------PFVQILNNLEFDHADIFNSLDDIKKQFHHLV 196

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     ++       ++V+K        V  +G +           I     V   
Sbjct: 197 -RTVPGNGTIVMPYAYPALEDVLKM--GVWTPVKRIGGKDGLHA----KLIKQDGSVFAV 249

Query: 295 VEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             G +F  +      GE+ V NAL+AA    A+G+D    L  LE   +   R E+ G  
Sbjct: 250 YNGAEFICEVNAQFCGEYNVSNALMAAAAAAAVGVDLKKALLSLETYKMPKRRMEYKGCE 309

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVFGCGGDR-DQGKRPIMGKIALDL 409
                +Y D+AH   ++++ L  +R       RII VF    +    G        +   
Sbjct: 310 GN-VVVYDDFAHHPTAIKLTLNGLRAKVGKDKRIIAVFEPRSNSMKMGANKEFLAESFAS 368

Query: 410 ADIAIV 415
           AD A +
Sbjct: 369 ADEAFI 374


>gi|258592730|emb|CBE69039.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           protein (folC) [NC10 bacterium 'Dutch sediment']
          Length = 452

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 138/431 (32%), Gaps = 80/431 (18%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF---------- 145
           +N ++ L       + + P  ++   GT+GK S ++ +  I + +G              
Sbjct: 23  ENMKRLLGAVGD-PHRRFPSVLV--GGTNGKGSTSALLSSILKSAGYRVGLYTSPHLLDF 79

Query: 146 ---------------------------------------QIGPTSTISSFAQDNRLTTPS 166
                                                   + P S            T  
Sbjct: 80  TERIQVDGQAISGSEVAALTDELRQVIAELFPTSDTPNPPVPPFSKGGVGKFCISHPTFF 139

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQA 225
            +    A  +     V +  VE    G      + +       TN+  +H +Y   T  A
Sbjct: 140 EVTTVLAFLHFVRSKVDYAVVEVGM-GGRFDATNVLDAQVAVITNIALEHEEYLGKTLGA 198

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               K  + +      +   +       + +         R +++         +   + 
Sbjct: 199 IAAEKAGIIKGATRVVTAVDVP------EALAVITDACRKRSVTLFDIRSAYDWRIHRSD 252

Query: 286 HNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAI-----GIDSALVLEHLEKL 339
              Q+ ++  +G+  + F  PL G  QV NA+ A  +   +      I  + + E L + 
Sbjct: 253 LFGQRFSMGDKGQPAETFDIPLLGRHQVVNAIAAIAVSRLLRTAGAAIPESSIREGLCRT 312

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN---SLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
               GR +          + +D AH      +L   L+  R   +GR+ +VFG   D+  
Sbjct: 313 RWP-GRLQLFPGR---PLLILDGAHNPAGAIALRAFLEEQR--FAGRLTLVFGVLQDK-- 364

Query: 397 GKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                M +    LA   I+T  ++ R+ DP ++  E     P      +  EAI  A  +
Sbjct: 365 -NWIAMLQALAPLAKRVILTRPESERAADPHRLL-EAERFCPKIEILEDVAEAIALARTV 422

Query: 456 LNKQDVLVVAG 466
            + +D +V+ G
Sbjct: 423 TDPEDTVVITG 433


>gi|226939683|ref|YP_002794756.1| Mpl [Laribacter hongkongensis HLHK9]
 gi|226714609|gb|ACO73747.1| Mpl [Laribacter hongkongensis HLHK9]
          Length = 459

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 95/303 (31%), Gaps = 14/303 (4%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV GT GK++ +S +  I + +GL+   +     I    ++  ++   P   A+  
Sbjct: 104 RWVLAVAGTHGKTTTSSMLAWILEANGLAPGFL-----IGGIPENFAVSARLPGEPAQEP 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              S   V       ++    + +            NL  DH D      A    +    
Sbjct: 159 GGESPFFVIEADEYDTAFFDKRSKFVHYHPRTAILNNLEFDHADIFADLPAI-ETQFHHL 217

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     ++   +A    V++R         +      +   K      +     + 
Sbjct: 218 VRTVPGTGRLVVNGREASLARVLERGCWTPVETFAAPAGSGWQAGKA----DDDGHFDVL 273

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++G       + L GE    NA+ A       G+        L     V  R E V  + 
Sbjct: 274 LDGNTVGRVRWNLMGEHNRLNAVAAVAAARHAGVRPQDACAALAMFANVKRRME-VKGSV 332

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLAD 411
            G  +Y D+AH   ++   +  +R       I+              +  +   +L  AD
Sbjct: 333 NGVTVYDDFAHHPTAIATTVAGLRARVGAARILAVLEPRSNTMKLGTMKAELPASLAQAD 392

Query: 412 IAI 414
              
Sbjct: 393 RVF 395


>gi|205356765|ref|ZP_03223524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345332|gb|EDZ31976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 475

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 125/358 (34%), Gaps = 57/358 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +T + GK+S+ +F+ ++ +    S       +T+     D          +     
Sbjct: 156 KIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQI----- 210

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A   G        ++        +G  H++Y ++ +   + K+    
Sbjct: 211 YIAEAG-------ARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-----VCAIHNKQQ 290
                                 KR   A     +   + K I+L       + +     +
Sbjct: 264 S---------------------KRLEKAFLHSSTQKEEDKLINLYDDKLSLIHSSLEGLE 302

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I +E K +DF   + G+F   N  V       +GI    + + +  ++ V  R + + 
Sbjct: 303 FKIDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQVL- 361

Query: 351 TNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             SR  +  +D     N   +    K  ++   GR ++V     +  + +   + KI  +
Sbjct: 362 --SREPKFIIDDGFNGNFKGMSTSYKLCKSY-KGRKVLVSPGIVEVSEEENIKLAKIINE 418

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             D+AI++          +I AEI      I   I K  + + ++T  +     D+++
Sbjct: 419 CFDLAIIS---------AQINAEIFKKELKIKTIILKE-KSQLVQTLAKETKHGDLIL 466


>gi|306820085|ref|ZP_07453733.1| tetrahydrofolate synthase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551863|gb|EFM39806.1| tetrahydrofolate synthase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 449

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 142/404 (35%), Gaps = 60/404 (14%)

Query: 112 KHPENILAVT---GTSGKSSVASFVQQICQRSGLSSF----------------------- 145
            +P++ +      GT+GK SV++   +I + SG  +                        
Sbjct: 41  NNPQDKIRCIHIAGTNGKGSVSAMTAKILEMSGYKTGLYISPHLIDFEERIRINSKFIEK 100

Query: 146 -----QIGPTSTISSFAQDNRLTTPSPIYLAKALSY--LSSQGVTHVSVEASSHGLDQHR 198
                 +   + I     +     P+   L   L+Y     Q V    +E    GL    
Sbjct: 101 SDIAKMMTKIAVIVDDLIEKGYGEPTEFELITCLAYYYFYKQNVDFAVIEVGLGGL-TDS 159

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            + I  I    T++  DH+     + +      R    ++ K+ P I+Y   A    V+K
Sbjct: 160 TNVITPILSVITSVSYDHMAVLGNEISLI---ARQKAGIIKKDVPVILYNQRAEVMNVIK 216

Query: 259 RA----------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +            N+  R  +   + K I    +     +Q   I  +   +D    L G
Sbjct: 217 KVCVEKNSPLIIANSEIREYT-DEEVKEIFNTDLVKNSPRQYFNIRTKNDSYDIALNLLG 275

Query: 309 EFQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYA 363
             Q+ N  V   +   +   GI+       L  L  V    R E V  N     + +D A
Sbjct: 276 VHQMKNTDVVINIAETLQSQGIEIKKSSI-LSALENVTWIGRMEIVKAN---PIVMLDGA 331

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRS 422
           H  ++++ + ++I+   S    ++   G  +D+     M +I   L+D  I V  D+ R 
Sbjct: 332 HNIDAIKQLAQSIKKYFS-YKKLILITGILKDKQV-DEMSEILAKLSDKIIAVEVDSVRR 389

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              + +   +           +  EA+  A+   +K D++++ G
Sbjct: 390 TSKDALIESLKKYNKDVEGSDDYKEALDKALSYADKDDMILICG 433


>gi|310830392|ref|YP_003965493.1| FolC bifunctional protein [Paenibacillus polymyxa SC2]
 gi|309249859|gb|ADO59425.1| FolC bifunctional protein [Paenibacillus polymyxa SC2]
          Length = 458

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 145/444 (32%), Gaps = 66/444 (14%)

Query: 74  SSAYSLQDFSATIRSNTPIL---VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           S A  LQ +   +     ++   +     +   L +     +     + + GT+GK S  
Sbjct: 8   SEAAPLQSYDEAVEWINGLIPFGIRPGLERIEQLMSRLGDPQRHLKFIHIAGTNGKGSTC 67

Query: 131 SFVQQICQRSGLSSFQIG--PTSTISSFAQDNRLTTPS---------------------- 166
           +F+  +  + G           +  ++  Q N    P                       
Sbjct: 68  AFLTSVLLKCGYDVGTFTSPYITRFTNRFQFNGTDIPDETLVSLANRLYPLVKEIADSEL 127

Query: 167 ----PIYLAKALSYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYH 220
                  ++ AL+ L    V    V     GL       + +  I    TN+G DH D  
Sbjct: 128 GSPTMFEVSTALAILYYATVAFPDVVVWETGLGGRMDVTNIVNPIVSIITNVGYDHTDIL 187

Query: 221 Q-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             T +     K  + +  +P  S A         +E   +  +      ++   G+    
Sbjct: 188 GDTLEQIAGEKAGIIKPGVPVVSCASQPEAIQVIRETAAKQGS------TLYLAGERFAY 241

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG------IDSALVL 333
           +++      Q  +     +       + G+ Q  NA  A      +       +D   +L
Sbjct: 242 ERLRGDETGQTFSFIGPFRQMKIDITMLGDHQCSNAAGAMMALEVLRQYMAFVLDDEELL 301

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           E   +     GRFE V T+ R   I +D AH     + + K++  + S + +V+      
Sbjct: 302 EGFRQ-TAWAGRFEQVSTSPR---IVLDGAHNPEGAQTLAKSLPQVYSYKKLVLMMGMLS 357

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----------GFIEK 442
                     +  L L D+ I+T+ + R +      AE+ H +              I +
Sbjct: 358 --NKHHEAYLQHILPLVDVLILTEPDFRRKMN---AAELAHHVEKLQPSYAKTDLKIIVE 412

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
           G+  +A+         +D+ VV+G
Sbjct: 413 GDWKKALSLLQSHTEAEDLGVVSG 436


>gi|260881599|ref|ZP_05404797.2| tetrahydrofolate synthase [Mitsuokella multacida DSM 20544]
 gi|260848349|gb|EEX68356.1| tetrahydrofolate synthase [Mitsuokella multacida DSM 20544]
          Length = 439

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 135/385 (35%), Gaps = 41/385 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--------SFAQDNRLTTPSP 167
             + VTGT+GK SV++ V+ + +RSG+ +        +S              +      
Sbjct: 45  RTIHVTGTNGKGSVSAMVEGVLRRSGIHTGFYSSPHLVSYTERIRVDGQNISEQDFAEGM 104

Query: 168 IYLAKALSYLSSQGVT---------------------HVSVEASSHGLDQHRLDGIKLIA 206
             +   +  + ++G                         +V     G      + I    
Sbjct: 105 TVIRAKIDMMLAEGAECPTQFEVLTALGFYYFAKCQVEYAVIEVGLGGTLDSTNVITPEV 164

Query: 207 GSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              TN+  +H D    T Q+    K  + +E +P  + A    +       +    NA  
Sbjct: 165 SVITNVTMEHADKLGGTLQSIAENKAGIIKEGVPVVTAAK--GEPLEVIRAVAEEKNADI 222

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V    +  +F+               + ++ + ++    L G  QV N+ VA      +
Sbjct: 223 FVAGEDFCSQFLSCDGRTQKLEFTSELLGIDHEPYE--LHLLGVHQVENSAVALMTIRLL 280

Query: 326 -GIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
             ID  + ++ + E L +V     F         I VD AH    ++ + +++     + 
Sbjct: 281 HNIDDRITMKTVTEALRLVSWPARFERLELGQQAIVVDGAHNPAGMKALRESLDEIFPAE 340

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIE 441
             +++ G   D+D         I L   D  +VT   + R++    +   +   +     
Sbjct: 341 ERVLLLGILKDKDIDTML---DILLRPNDTVVVTVPQSERADSAADLLRRVAPAVQHVEA 397

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             N  EA+  A+E+ N + +LV+AG
Sbjct: 398 FENNTEALNRALELANGEKLLVIAG 422


>gi|307747707|gb|ADN90977.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 475

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 123/358 (34%), Gaps = 57/358 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +T + GK+S+ +F+ ++ +    S       +T+     D          +     
Sbjct: 156 KIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQI----- 210

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A   G        ++        +G  H++Y ++ +   + K+    
Sbjct: 211 YIAEAG-------ARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQ 290
                                 KR   A     +   + K        L  + +     +
Sbjct: 264 S---------------------KRLEKAFLHSSTQKEEDKLISLYDDKLSLIHSSLEGLE 302

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I +E K +DF   + G+F   N  V       +GI    + + +  ++ V  R + + 
Sbjct: 303 FKIDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQVL- 361

Query: 351 TNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             SR  +  +D     N   +    +  ++   GR ++V     +  + +   + KI  +
Sbjct: 362 --SREPKFIIDDGFNGNFKGMSTSYELCKSY-KGRKVLVSPGIVEVSEEENIKLAKIINE 418

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             D+AI++          +I AEI      I   I K  + + ++T  +     D+++
Sbjct: 419 CFDLAIIS---------AQINAEIFKKELKIKTIILKE-KSQLVQTLAKETKNGDLIL 466


>gi|307246327|ref|ZP_07528406.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307253047|ref|ZP_07534932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255311|ref|ZP_07537124.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259746|ref|ZP_07541467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852797|gb|EFM85023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306859505|gb|EFM91533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861760|gb|EFM93741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866214|gb|EFM98081.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 439

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 85/269 (31%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 170 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSSGCILSAAADENVQNTLKMGSYSELQF 228

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 229 I-----GEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 283

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +  A   + L        R E V     G  +Y D+AH   ++   +  +R       RI
Sbjct: 284 VSVAGACDALGSFINANRRLE-VKGEVNGITVYDDFAHHPTAIAATINALRGKVGKEQRI 342

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFI 440
           + V          G        +L  A+   V         P+ I    + I   +    
Sbjct: 343 LAVLEPRSNTMKMGLHKEEIAPSLVDANAVFVYQ-------PDTIPWAVSVITDNLTQPA 395

Query: 441 E-KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   +  E ++  +E     D ++V   G
Sbjct: 396 KWSADLDELVKMIVEEAKPTDHILVMSNG 424


>gi|157415066|ref|YP_001482322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386030|gb|ABV52345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931213|gb|EFV10185.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 475

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 123/358 (34%), Gaps = 57/358 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +T + GK+S+ +F+ ++ +    S       +T+     D          +     
Sbjct: 156 KIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQI----- 210

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A   G        ++        +G  H++Y ++ +   + K+    
Sbjct: 211 YIAEAG-------ARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQ 290
                                 KR   A     +   + K        L  + +     +
Sbjct: 264 S---------------------KRLEKAFLHSSTQKEEDKLISLYDDKLSLIHSSLEGLE 302

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I +E K +DF   + G+F   N  V       +GI    + + +  ++ V  R + + 
Sbjct: 303 FKIDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQVL- 361

Query: 351 TNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             SR  +  +D     N   +    +  ++   GR ++V     +  + +   + KI  +
Sbjct: 362 --SREPKFIIDDGFNGNFKGMSTSYELCKSY-KGRKVLVSPGIVEVSEEENIKLAKIINE 418

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             D+AI++          +I AEI      I   I K  + + ++T  +     D+++
Sbjct: 419 CFDLAIIS---------AQINAEIFKKELKIKTIILKE-KSQLVQTLAKETKNGDLIL 466


>gi|86152106|ref|ZP_01070318.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124318|ref|YP_004066322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840891|gb|EAQ58141.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018040|gb|ADT66133.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 475

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 123/358 (34%), Gaps = 57/358 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +T + GK+S+ +F+ ++ +    S       +T+     D          +     
Sbjct: 156 KIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQI----- 210

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A   G        ++        +G  H++Y ++ +   + K+    
Sbjct: 211 YIAEAG-------ARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQ 290
                                 KR   A     +   + K        L  + +     +
Sbjct: 264 S---------------------KRLEKAFLHSSTQKEEDKLISLYDDKLSLIHSSLEGLE 302

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             + +E K +DF   + G+F   N  V       +GI    + + +  ++ V  R + + 
Sbjct: 303 FKVDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQVL- 361

Query: 351 TNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             SR  +  +D     N   +    +  ++   GR ++V     +  + +   + KI  +
Sbjct: 362 --SREPKFIIDDGFNGNFKGMSTSYELCKSY-KGRKVLVSPGIVEVSEEENIKLAKIINE 418

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             D+AI++          +I AEI      I   I K  + + ++T  +     D+++
Sbjct: 419 CFDLAIIS---------AQINAEIFKKELKIKTIILKE-KSQLVQTLAKETKNGDLIL 466


>gi|77917785|ref|YP_355600.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77543868|gb|ABA87430.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
          Length = 419

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 110/323 (34%), Gaps = 25/323 (7%)

Query: 106 ASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           A     ++     ILAVTG+ GK++   F+ +I    G     +   +T  +  ++ R  
Sbjct: 27  ARWHRFRYLRKTKILAVTGSCGKTTATYFLGRILGECGPCYAGV-HRNTSRAIYKNMRKM 85

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             S  YL +              +     G     +  +    G  T +G DH    + +
Sbjct: 86  RTSYRYLVQE-------------MGVGFPGDMAKNIRALPPYIGIVTTIGLDHYTSFRNR 132

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +     K  L   L P    A++ ADD +   VM  A      +L+ G            
Sbjct: 133 EGTAAEKGTLIAAL-PPSGTAVLNADDPH---VMAMASQTQASILTYGCSEHVDVRGSAI 188

Query: 284 AIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                Q++++  +   +       L G+  V + L A    +A G+  A     L  +  
Sbjct: 189 CSDWPQRLSLNVTYGDRSVRVETGLFGDLLVTSLLAAIAGALAAGVSLAQCAASLHGVES 248

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI---LKNIRTITSGRIIVVFGCGGDRDQGK 398
            P R     +      I   +     S+E     +KN        ++ VF   G     K
Sbjct: 249 FPARLSIHRSPQGSWMINDTFKAPFWSVERTVGLMKNAVAPRKTVVLGVFSDTGGSGSRK 308

Query: 399 RPIMGKIALDLADIAIVTDDNPR 421
              M K+AL++AD  +    N  
Sbjct: 309 YRAMAKLALEVADRVVFVGPNAA 331


>gi|222478762|ref|YP_002564999.1| dihydropteroate synthase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451664|gb|ACM55929.1| dihydropteroate synthase [Halorubrum lacusprofundi ATCC 49239]
          Length = 878

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 151/421 (35%), Gaps = 57/421 (13%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG------------ 141
           V   T +  +L       +   + + V G++GK S A   + I + +G            
Sbjct: 18  VKPGTERVAALLDQVGNPEEDVSFVQVAGSNGKGSTARMTESILREAGLSVGLYTSPHLS 77

Query: 142 ------LSSFQIGPTSTISSFAQDNRLT------TPSPIYLAKALSYLSSQGVTHVSVEA 189
                          + I+ F ++ +           P+   + ++ ++        V+ 
Sbjct: 78  ALADRVRVDGLAMTEAAIADFVEEVKPWLVERAANGEPLTFFEVVTAMAIHDFARREVDV 137

Query: 190 S----SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
           +      G +      +  +A + TN+  +H      T       K R+ +  +P  +  
Sbjct: 138 AVLEVGLGGEYDATSAVDPVATAVTNVSLEHTAVLGDTIAEIARTKARIADAGVPLVTAC 197

Query: 245 IIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQV-----TISVEGK 298
              A  +  +EV   A      V  + G  G      +  ++  + +V      +++ G+
Sbjct: 198 EGEAL-SVVREVANDAGAPIATVARASGSSGNGETDDQTLSVAYEGRVSPTDAEVTLAGE 256

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCI----AIG------IDSALVLEHLEKLHVVPGRFE 347
            D  +  PL G+ Q  NA +A  L      A+G      +    V + L +     GRFE
Sbjct: 257 VDGTYRIPLVGDHQATNAGIAVALARRTAGALGNGTDASLPDEAVRDGLARATWP-GRFE 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V T        +D AH   +   +   +       + +V+G   D+D     +    AL
Sbjct: 316 VVDTA---PLTVLDGAHNPAACRTLAGTLAEYDYDDLHLVYGAMHDKDH----VGAASAL 368

Query: 408 DLADIAIVT-DDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             AD A+    D  R+EDPE + A +   G+       +   A+ TA+E  +  D +++ 
Sbjct: 369 PDADSAVTCRPDLDRAEDPEVLAAALRTAGVDDVTAGDDVAAALETAVERADLGDCVLLV 428

Query: 466 G 466
           G
Sbjct: 429 G 429


>gi|71066594|ref|YP_265321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychrobacter
           arcticus 273-4]
 gi|118595676|sp|Q4FQ21|MURD_PSYA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71039579|gb|AAZ19887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychrobacter
           arcticus 273-4]
          Length = 476

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 125/357 (35%), Gaps = 46/357 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   SL + +        I VV + + F               I+A+TG++ KS
Sbjct: 76  AARIIISPGISLDNDAIAAARAANIPVVSDIQLF--------CEACTVPIVAITGSNAKS 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V Q+   +G++    G                        ALS LS+  +    +
Sbjct: 128 TVTTLVGQMAADAGINVGVGGNIGV-------------------PALSLLSNDKMELAVI 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +  +     +  N+  DH+D H     Y  AK R+F+         +I 
Sbjct: 169 ELSSFQLE--TVTNLGAQVATVLNMSPDHLDRHGDMLGYHQAKHRIFQG----AKSVVIN 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LF 304
            +DA ++ ++  +       LS G          +      Q  T    G +        
Sbjct: 223 REDALTRPLVSDSLPR----LSTGIHAPNKGHYGLITDAAGQ--TYLARGTERLISADKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   + NA  A  L    G+    +L  L++   +  R ++V T +           
Sbjct: 277 KIKGRHNLLNAQAALALGELAGLPLESMLSTLQQFAGLEHRCQYVATIAGIDYFNDSKGT 336

Query: 365 TSNSLEMI---LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
              S       L  +     G+++++   G  + Q    +   I   ++ +  + +D
Sbjct: 337 NIGSTMAAVEGLGAVYAPKDGKLLLIL-GGQGKAQQFGELSPFINQYVSQVLFIGED 392


>gi|307261892|ref|ZP_07543554.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868439|gb|EFN00254.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 439

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 85/269 (31%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 170 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSGGCILSAAADENVQNTLKMGSYSELQF 228

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 229 I-----GEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 283

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +  A   + L        R E V     G  +Y D+AH   ++   +  +R       RI
Sbjct: 284 VSVAGACDALGSFINANRRLE-VKGEVNGITVYDDFAHHPTAIAATINALRGKVGKEQRI 342

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFI 440
           + V          G        +L  A+   V         P+ I    + I   +    
Sbjct: 343 LAVLEPRSNTMKMGLHKEEIAPSLVDANAVFVYQ-------PDTIPWAVSVITDNLTQPA 395

Query: 441 E-KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   +  E ++  +E     D ++V   G
Sbjct: 396 KWSADLDELVKMIVEEAKPTDHILVMSNG 424


>gi|216263492|ref|ZP_03435487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
 gi|215980336|gb|EEC21157.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
          Length = 449

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 125/350 (35%), Gaps = 41/350 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT GKS++ S + Q  ++      ++G    +S  +  ++L   SP+ L  +  
Sbjct: 110 PIIAVTGTKGKSTLVSLLYQALKKK-YPRVKLGGNIGVSPLSFFDQLDGKSPLILELSSW 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L S                   L+    I    TN+  DH +Y+     Y   K ++F 
Sbjct: 169 QLQS-------------------LENFNPILSIITNVYNDHQNYYSNFDDYIIDKSKIF- 208

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             + + S  +I  D AY K   K    A   + S   +    +L +     NK +V  + 
Sbjct: 209 --VNQTSGIVIIQDKAYYKYFSKFESKAKVILFS---EFNPCNLDQDIFYSNKGEVYFND 263

Query: 296 E--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G  F+              L+A  +   + ID   + + L+    +  R EFV    
Sbjct: 264 NLIGSFFESQVVFMIP-----KLIAFFVAYYLNIDLNHMFQILKNFKGIEHRLEFVKLVR 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               ++ +   ++     +L      T+   I +   G D++         I L  A I 
Sbjct: 319 N--VMFYNDTASTIPDSTVLSVKSLKTNDNCINLIVGGTDKNLDFSSFSKIINLVKAWIL 376

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I            KI   +      +    +   A+  A E+ +  D+++
Sbjct: 377 IKGS------ATVKIINVLEKSSIQYFVFDSLRGAVNYAFEISSPGDIVL 420


>gi|111115413|ref|YP_710031.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
 gi|122956339|sp|Q0SMS3|MURD_BORAP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110890687|gb|ABH01855.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
          Length = 451

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 125/350 (35%), Gaps = 41/350 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT GKS++ S + Q  ++      ++G    +S  +  ++L   SP+ L  +  
Sbjct: 112 PIIAVTGTKGKSTLVSLLYQALKKK-YPRVKLGGNIGVSPLSFFDQLDGKSPLILELSSW 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L S                   L+    I    TN+  DH +Y+     Y   K ++F 
Sbjct: 171 QLQS-------------------LENFNPILSIITNVYNDHQNYYSNFDDYIIDKSKIF- 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             + + S  +I  D AY K   K    A   + S   +    +L +     NK +V  + 
Sbjct: 211 --VNQTSGIVIIQDKAYYKYFSKFESKAKVILFS---EFNPCNLDQDIFYSNKGEVYFND 265

Query: 296 E--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              G  F+              L+A  +   + ID   + + L+    +  R EFV    
Sbjct: 266 NLIGSFFESQVVFMIP-----KLIAFFVAYYLNIDLNHMFQILKNFKGIEHRLEFVKLVR 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               ++ +   ++     +L      T+   I +   G D++         I L  A I 
Sbjct: 321 N--VMFYNDTASTIPDSTVLSVKSLKTNDNCINLIVGGTDKNLDFSSFSKIINLVKAWIL 378

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I            KI   +      +    +   A+  A E+ +  D+++
Sbjct: 379 IKGS------ATVKIINVLEKSSIQYFVFDSLRGAVNYAFEISSPGDIVL 422


>gi|212638461|ref|YP_002314981.1| Folylpolyglutamate synthase [Anoxybacillus flavithermus WK1]
 gi|212559941|gb|ACJ32996.1| Folylpolyglutamate synthase [Anoxybacillus flavithermus WK1]
          Length = 434

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 138/400 (34%), Gaps = 62/400 (15%)

Query: 112 KHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST---------------- 152
            HPE  +    V GT+GK S   F++ I Q +G                           
Sbjct: 35  DHPERRIKAIHVGGTNGKGSTVCFLRHILQEAGYRVGTFTSPYVEQFNERISINGKPISD 94

Query: 153 ------------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                       ++   +   L  P+   +  A++      +    V     GL   RLD
Sbjct: 95  VDLIKLVQIIQPLAEELEQTELGGPTEFEVITAMALYYFGKMNVQDVVIFEVGLG-GRLD 153

Query: 201 G---IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
               I  +    TN+G DHI     T +     K  + +  +P     +   D   + +V
Sbjct: 154 STNVIYPLLSVITNVGYDHIHILGNTLEQIAFEKAGIIKAGIP----VMTAIDQPEALQV 209

Query: 257 MKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYN 314
           +++ A +   +V  +G   +   +       N ++ ++      + D    + G  QV N
Sbjct: 210 VEQKATSVRAKVYVLG---RDFTIFAHEPTTNGERFSLQTPFTTYSDVTTTMLGAHQVKN 266

Query: 315 ALVAAGLCIAIG------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           A +A  +   +       I+   +   + K     GRFE +        I +D AH    
Sbjct: 267 ASLALMVADYLRTYYSFLIEREHMYNGIRK-AAWLGRFEKMDER---PLIIIDGAHNEEG 322

Query: 369 LEMILKNIRTITSGRIIVVFG--CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++ ++  ++     R + V     G          +  IA  +      T D PR+   E
Sbjct: 323 MDSLVATMKDHYPNRRVHVLFTALGDKPVTAMIHKLETIAETM---TFTTFDFPRALSAE 379

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++  +  H  P   +  +  + ++   + + K D++++ G
Sbjct: 380 QLAEQATH--PNVQQTNDWQQWLKEKRKQVAKDDIILITG 417


>gi|42520684|ref|NP_966599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|62900687|sp|Q73GT3|MURD_WOLPM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|42410424|gb|AAS14533.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 509

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/395 (14%), Positives = 114/395 (28%), Gaps = 94/395 (23%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++ VTGT+GKS+  S +  I + +G      G                          
Sbjct: 109 QKVIGVTGTNGKSTTTSLIGHILKSAGKKVAIGGNLGVPV-------------------- 148

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +      +E SS  L+   ++ I +   +  N+  DHID H + + Y   K++L 
Sbjct: 149 -LDLERDAEIYVIELSSFQLEL--MNEINVDISALLNITPDHIDRHGSMENYIATKLKL- 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--------------------------L 268
              +     A+I  D+  + ++  +       +                          +
Sbjct: 205 ---INGSEVAVIGCDNEITADIFNKFTGDKIPISVTYSPMSFQCVTLESRKEKPLPTTQM 261

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT--------------------------ISVEGKDFDF 302
           + G     I L     +   +Q+T                          + +E      
Sbjct: 262 TEGGARDLISLAGNNLLDYSEQITGIDRNYLDPSVSYLDDKRGTGIQKISLKLENHSLSV 321

Query: 303 L-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +       N      +C  +G+DS  ++  ++    +  R E +G       +   
Sbjct: 322 SDVKINLISNAENIAATYAVCKVLGVDSNTIINGIKSFSGLRHRNELLGKIRNVFFVNDS 381

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  + S E  + +   I           G  +  G   +            I       
Sbjct: 382 KATNAKSSEKAILSYENINW------IAGGRSKKGGIESLSKHFTRVRKAFLI------- 428

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            E  E   A ++     +++  N  +A R A E  
Sbjct: 429 GESTEA-FANVMENKVDYVKCCNLEDAFRLAFEEA 462


>gi|58697458|ref|ZP_00372747.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536107|gb|EAL59735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 418

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/395 (14%), Positives = 114/395 (28%), Gaps = 94/395 (23%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++ VTGT+GKS+  S +  I + +G      G                          
Sbjct: 18  QKVIGVTGTNGKSTTTSLIGHILKSAGKKVAIGGNLGVPV-------------------- 57

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +      +E SS  L+   ++ I +   +  N+  DHID H + + Y   K++L 
Sbjct: 58  -LDLERDAEIYVIELSSFQLEL--MNEINVDISALLNITPDHIDRHGSMENYIATKLKL- 113

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--------------------------L 268
              +     A+I  D+  + ++  +       +                          +
Sbjct: 114 ---INGSEVAVIGCDNEITADIFNKFTGDKIPISVTYSPMSFQRVTLESRKEKPLPTTQM 170

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT--------------------------ISVEGKDFDF 302
           + G     I L     +   +Q+T                          + +E      
Sbjct: 171 TEGGARDLISLAGNNLLDYSEQITGIDRNYLDPSVSYLDDKRGTGIQKISLKLENHSLSV 230

Query: 303 L-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +       N      +C  +G+DS  ++  ++    +  R E +G       +   
Sbjct: 231 SDVKINLISNAENIAATYAVCKVLGVDSNTIINGIKSFSGLRHRNELLGKIRNVFFVNDS 290

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  + S E  + +   I           G  +  G   +            I       
Sbjct: 291 KATNAKSSEKAILSYENINW------IAGGRSKKGGIESLSKHFTRVRKAFLI------- 337

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            E  E   A ++     +++  N  +A R A E  
Sbjct: 338 GESTEA-FANVMENKVDYVKCCNLEDAFRLAFEEA 371


>gi|58698935|ref|ZP_00373796.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630554|ref|YP_002727345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia sp. wRi]
 gi|58534552|gb|EAL58690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592535|gb|ACN95554.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia sp. wRi]
          Length = 517

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/395 (14%), Positives = 114/395 (28%), Gaps = 94/395 (23%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + ++ VTGT+GKS+  S +  I + +G      G                          
Sbjct: 117 QKVIGVTGTNGKSTTTSLIGHILKSAGKKVAIGGNLGVPV-------------------- 156

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +      +E SS  L+   ++ I +   +  N+  DHID H + + Y   K++L 
Sbjct: 157 -LDLERDAEIYVIELSSFQLEL--MNEINVDISALLNITPDHIDRHGSMENYIATKLKL- 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--------------------------L 268
              +     A+I  D+  + ++  +       +                          +
Sbjct: 213 ---INGSEVAVIGCDNEITADIFNKFTGDKIPISVTYSPMSFQRVTLESRKEKPLPTTQM 269

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT--------------------------ISVEGKDFDF 302
           + G     I L     +   +Q+T                          + +E      
Sbjct: 270 TEGGARDLISLAGNNLLDYSEQITGIDRNYLDPSVSYLDDKRGTGIQKISLKLENHSLSV 329

Query: 303 L-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +       N      +C  +G+DS  ++  ++    +  R E +G       +   
Sbjct: 330 SDVKINLISNAENIAATYAVCKVLGVDSNTIINGIKSFSGLRHRNELLGKIRNVFFVNDS 389

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  + S E  + +   I           G  +  G   +            I       
Sbjct: 390 KATNAKSSEKAILSYENINW------IAGGRSKKGGIESLSKHFTRVRKAFLI------- 436

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            E  E   A ++     +++  N  +A R A E  
Sbjct: 437 GESTEA-FANVMENKVDYVKCCNLEDAFRLAFEEA 470


>gi|303250495|ref|ZP_07336692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307251537|ref|ZP_07533444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307256037|ref|ZP_07537825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|302650483|gb|EFL80642.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861001|gb|EFM93007.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306865459|gb|EFM97354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 436

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 137/395 (34%), Gaps = 58/395 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +L         N  + VV +   F+              I+A+TG +GKS+V 
Sbjct: 70  IVISPGLALATPEIQQAINAGMEVVGDIELFVREA--------KAPIIAITGANGKSTVT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +++G+     G                         LS L+ +      +E S
Sbjct: 122 TLVTEMAKQAGIKVGMGGNIGV-------------------PVLSLLNDE-YELFVLELS 161

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  L+      +  +A +  N+  DH+D Y+ + + Y  AK+R+++         I+  +
Sbjct: 162 SFQLE--TTSSLNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAEN----VIVNGE 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +  +  +A     R      +    +  +   +++     I  +         + G 
Sbjct: 216 DRLTYPLETQAVKKLIRFAEYNAE----YTMRNGILYSGDDAIIPTK------EMLISGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  L  A GI    +++ L+    +  RF+ V TN     +    A    S 
Sbjct: 266 HNEMNALAAMALAEAAGIPREGIVKALQVYGGLDHRFQAVKTNDGVRWVNDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++   +G + ++   G  +      +   I            D           
Sbjct: 326 VAALNGLQ--VAGTLYLLL-GGDGKAADFSELKPLINKPNIVCYCFGQDG---------- 372

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A++       +      +AI      L K D++++
Sbjct: 373 AQLAALSSQSVLVETMQQAIEQIRPQLKKGDMVLL 407


>gi|149196463|ref|ZP_01873518.1| UDP-N-acetylmuramate-alanine ligase [Lentisphaera araneosa
           HTCC2155]
 gi|149140724|gb|EDM29122.1| UDP-N-acetylmuramate-alanine ligase [Lentisphaera araneosa
           HTCC2155]
          Length = 458

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 128/412 (31%), Gaps = 57/412 (13%)

Query: 72  VVSSAYSLQDFSATIRSNTP-ILVVDNT-RKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           V S A  L  FS+ +  + P  L   NT R   S   +    +     +AV G+ GK+SV
Sbjct: 71  VSSFAPDLIVFSSALEDDNPDFLAAPNTARMHRSQAIAAAVDQSGLKAIAVAGSCGKTSV 130

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +++    +  G +   I        ++ D    T    +           G  +V  EA
Sbjct: 131 TAWIAATMRAMGKAPVMIN-----GGYSPDLESDTHPGNF---------GDGSDYVIFEA 176

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL-FEELLPKESPAIIYA 248
                    L           N+G DH         +   K+ + F+  L     A++  
Sbjct: 177 DESDGS---LVNFTPELSLLLNMGDDH---------HSKDKLEVMFKTFLDNAKHALVN- 223

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                 E+   A +       +  Q  F         HN+Q VT S+ G DF        
Sbjct: 224 -----DELAYLAKDHPSHKSFLSEQADF---SLSQVQHNQQGVTFSLNG-DFVQTSQWGV 274

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NAL         G     +L  +     V  RFE  G   +   +Y DYAH    
Sbjct: 275 -HSADNALAVIASLATCGFSLEEILPAMLAFCGVRRRFELKG-RVKNVPLYDDYAHNPQK 332

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI----MGKIALDLADIAIV--------- 415
           +   +   + I +G ++V F   G    G          +  L+  D  +          
Sbjct: 333 IAACIAAAQAIYNGPVLVFFQPHGYGPLGFMAEALQRELEGVLNPQDKFVFLPVFYAGGT 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           T   P S   +++            E  +R        E       ++V G 
Sbjct: 393 TSFKPTS---KEVCESYAQAGLKVDELADRELCSAYLAEQAKDYSCILVVGA 441


>gi|303250757|ref|ZP_07336952.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650362|gb|EFL80523.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 454

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 85/269 (31%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 185 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSSGCILSAAADENVQNTLKMGSYSELQF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 244 I-----GEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +  A   + L        R E V     G  +Y D+AH   ++   +  +R       RI
Sbjct: 299 VSVAGACDALGSFINANRRLE-VKGEVNGITVYDDFAHHPTAIAATINALRGKVGKEQRI 357

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFI 440
           + V          G        +L  A+   V         P+ I    + I   +    
Sbjct: 358 LAVLEPRSNTMKMGLHKEEIAPSLVDANAVFVYQ-------PDTIPWAVSVITDNLTQPA 410

Query: 441 E-KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   +  E ++  +E     D ++V   G
Sbjct: 411 KWSADLDELVKMIVEEAKPTDHILVMSNG 439


>gi|237738134|ref|ZP_04568615.1| folylpolyglutamate synthase [Fusobacterium mortiferum ATCC 9817]
 gi|229420014|gb|EEO35061.1| folylpolyglutamate synthase [Fusobacterium mortiferum ATCC 9817]
          Length = 411

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 135/381 (35%), Gaps = 53/381 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS--------- 166
            ++ + GT+GK S ++ ++ I   +G    +   +  I  F +  R              
Sbjct: 40  KVIHIAGTNGKGSTSTTIETILLEAGYKVGKY-TSPHILKFNERIRANGQDISDEEIVKY 98

Query: 167 ------------------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                              +  A    Y S  G+ +V +E    G      +  +     
Sbjct: 99  YQIVKEVIAKTGIRPTFFEVTTAMMFKYFSDLGLDYVVLETGM-GGRFDATNVCEAELCV 157

Query: 209 FTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            TN+  DH +Y   T       K  +      K +  ++ AD     E +K        +
Sbjct: 158 ITNVSLDHTEYLGDTIYKIAKEKAGII-----KNTSRVVVADSN--PEFLKAISEEKAEI 210

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++V         K      + ++    ++     + F L G +Q  N L A  + I +GI
Sbjct: 211 INV-----LEKYKNTTMELDFEKFITKIDLGAEKYNFSLFGNYQFKNFLTAYEVAIQLGI 265

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D  ++    +K+        +     +   + +D AH  + +  + K I        +V+
Sbjct: 266 DKEIIKRASKKVVWQCRFERYC----QNPLVVLDGAHNEDGMRELCKIIEQGYKSEEVVI 321

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
                 +D+  + ++G +   +AD  I T   +NPR  + EKI  ++     G I + N 
Sbjct: 322 ITS-ILKDKDVKHMLGLM-RKIADNIIFTSLEENPRGTNGEKIFEQLED-KKGCIVENNM 378

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A   A     K  ++VV G
Sbjct: 379 KKAYELAKSYNKK--IIVVCG 397


>gi|262066316|ref|ZP_06025928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380011|gb|EFE87529.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 432

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 109/300 (36%), Gaps = 36/300 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TGT+GKS+  + +  +   +G  +   G                     L++ L 
Sbjct: 92  KIIAITGTNGKSTTTAKISDLLNHAGYKACYAGNIG----------------RSLSEVL- 134

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L  + +  VS+E SS  L+   ++  K       N+G DHI+ +++   Y++ K  +  
Sbjct: 135 -LHEKDLDFVSLELSSFQLEN--VENFKPYISMIINMGPDHIERYKSFDEYYDTKFNI-S 190

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +   +    I   DD    E+ KRA     + +SV    +         I+  +   I V
Sbjct: 191 KNQDENQYFIENIDDV---EIEKRAKQIKAKRISVSKSKEANIYVANDKIYVGKDCIIDV 247

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +         L G   V N L        + ID   + E L     +  R E      + 
Sbjct: 248 D------KLSLKGIHNVENTLFMVATSEILNIDREKLKEFLMIATPLEHRTELFFNYGKV 301

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I    A   +S          I + +  ++   G D+     P+   I  ++ ++ ++
Sbjct: 302 KFINDSKATNVDS------TKFAIQANKDSILICGGYDKGVDLAPLAEMIKENIKEVYLI 355


>gi|319952214|ref|YP_004163481.1| udp-n-acetylmuramate--l-alanine ligase [Cellulophaga algicola DSM
           14237]
 gi|319420874|gb|ADV47983.1| UDP-N-acetylmuramate--L-alanine ligase [Cellulophaga algicola DSM
           14237]
          Length = 453

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 104/310 (33%), Gaps = 31/310 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSP 167
                 +  + + G+ GK+++ S +  +         + +G                   
Sbjct: 97  YEQSKNKTRVVIGGSHGKTTITSMILHVLNYHNRDVDYMVGAQL--------------DG 142

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 L+  +   +       SS    + +    K      + +  DHI+   T   Y 
Sbjct: 143 FDRMVHLTEKNDFIILEGDEYLSSPIDRRPKFHLYKPNIALLSGIAWDHINVFPTFDNYV 202

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             + ++F + + K        +D    +V++ + NA  ++          +     ++ N
Sbjct: 203 E-QFQIFVDSIVKGGSITYNEEDENVVKVVEASENAIRKL---------PYHTPEYSVEN 252

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q +  + EG        + G+  + N   A  +C  +GID     E +        R E
Sbjct: 253 GQTLLDTPEG---PMPIEVFGKHNLSNLAGAKWICQNMGIDEDDFYEAIGTFKGASKRLE 309

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-- 405
            +  +     +Y D+AH+ + +    K ++     R ++ F             + +   
Sbjct: 310 KIAESPSCI-VYKDFAHSPSKVAATTKAVKEQYPDRKLIAFLELHTYSSFNPEFLKEYKG 368

Query: 406 ALDLADIAIV 415
           ALD AD+ +V
Sbjct: 369 ALDPADVPVV 378


>gi|238927325|ref|ZP_04659085.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas
           flueggei ATCC 43531]
 gi|238884607|gb|EEQ48245.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas
           flueggei ATCC 43531]
          Length = 469

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 98/285 (34%), Gaps = 24/285 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A                  +  N+  DHI  H + + Y   K +LF     ++   ++
Sbjct: 175 IAAEISSYQMEATTHFHAHIVAELNITPDHIVRHGSMEVYQAMKEKLFAAQTAED-YLVL 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--- 303
            ADD +++ + +RA    C         +   L +   +     + I  +G +   +   
Sbjct: 234 NADDPHTRGMAERAAGRVCLF------SRREELAEGACVRADGMIVIRWDGAEHVLIPAD 287

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V N L A+ + +  G+  A +   L     V  R EFV   +         
Sbjct: 288 ELGIPGAHNVENVLAASAMALFAGVTPAEMRPVLRAFKGVEHRIEFVRALAGVSYYNDSK 347

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A  ++S    L+          I++   G D+       M  +   + ++ +V       
Sbjct: 348 ATNTDSAIKALEAFDGH-----IILIAGGDDKLTDLGEFMELVHARVDELILVG-----D 397

Query: 423 EDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVV 464
                  A    GIP         +  +A++ A E+  +  ++++
Sbjct: 398 AAERFAAAARDAGIPEAQIHRVGYHMEKAVQLARELAAEGQIVLL 442


>gi|229543664|ref|ZP_04432724.1| FolC bifunctional protein [Bacillus coagulans 36D1]
 gi|229328084|gb|EEN93759.1| FolC bifunctional protein [Bacillus coagulans 36D1]
          Length = 440

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 137/403 (33%), Gaps = 54/403 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI---------------G 148
           L     + +     + V GT+GK S  +F++ I +++  +                   G
Sbjct: 30  LMEKLHHPEQKIRTVHVAGTNGKGSTVTFLRNILEQASYTVGTFTSPYIEQFNERISING 89

Query: 149 PTSTISSFAQDNRLTTPSPIYLAK-------------ALSYLSSQGVTHVSVEASSHGLD 195
              + +   +      P    L               A+S +   G+  V +     GL 
Sbjct: 90  TPVSDADLIRLTNEIRPLAEELEHTAFGAPTEFEVITAMSLVYFAGIQPVDIVIYEVGLG 149

Query: 196 QHRLDG---IKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             RLD    I  +    TN+G DH++    T       K  + +  +P  + A++    A
Sbjct: 150 -GRLDSTNVITPLVSLITNIGHDHMNVLGHTIAEIAFEKAGIIKHGVPVATTAMLPDALA 208

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEF 310
             +E   +      R       GK     ++      +    +     +D L   + G  
Sbjct: 209 VIEEKAAKEKAPLFR------AGKEFSFAEIGGDLTGEHFRFASPYGAYDCLSITMMGRH 262

Query: 311 QVYNALVAAGLCIAIG--IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           Q+YNA +A      +       +    LEK  ++               + +D AH    
Sbjct: 263 QIYNAALAVMGAELLRHIHHFRIPQHALEKGLLLSKWIGRFEKLLDDPLVIIDGAHNPEG 322

Query: 369 LEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++ +++ + T      I ++F   GD+D            D  +I   T D PR      
Sbjct: 323 IDSLIETMDTHLRGKNIHMIFSALGDKDLDHMIPKLDHKTD--EIIFTTFDFPR-----A 375

Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAI-EMLNKQDVLVVAG 466
           I AE+++ I     K    +  E +   I EM   +DVLV+ G
Sbjct: 376 IPAEMLYKISHHQNKSFSEDWKETVLAKIKEMKGSRDVLVITG 418


>gi|165976826|ref|YP_001652419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876927|gb|ABY69975.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 454

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 85/269 (31%), Gaps = 22/269 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D     +A       L    +P     +  A D   +  +K    +  + 
Sbjct: 185 IINNIEFDHADIFDDLKAIQRQFHHLV-RTMPSGGCILSAAADENVQNTLKMGSYSELQF 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     G+           +     +  +G K  +  + + G   ++NAL+A       G
Sbjct: 244 I-----GEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
           +  A   + L        R E V     G  +Y D+AH   ++   +  +R       RI
Sbjct: 299 VSVAGACDALGSFINANRRLE-VKGEVNGITVYDDFAHHPTAIAATINALRGKVGKEQRI 357

Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFI 440
           + V          G        +L  A+   V         P+ I    + I   +    
Sbjct: 358 LAVLEPRSNTMKMGLHKEEIAPSLVDANAVFVYQ-------PDTIPWAVSVITDNLTQPA 410

Query: 441 E-KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   +  E ++  +E     D ++V   G
Sbjct: 411 KWSADLDELVKMIVEEAKPTDHILVMSNG 439


>gi|258511797|ref|YP_003185231.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478523|gb|ACV58842.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 432

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 129/406 (31%), Gaps = 57/406 (14%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           D  R+ LS         HPE+ L      GT+GK SV + +  +    G  +        
Sbjct: 23  DRMRRILSKL------DHPESDLCFYHVAGTNGKGSVCAMLAAMLTALGYRTGLYTSPGL 76

Query: 153 IS-----------------SFAQDNRLTTPSPIYLAKALSYL--------SSQGVTHVSV 187
                              +   +                 L         S GV    V
Sbjct: 77  GGFNGRVAIDGAPISEPEFAEHVEAVRRASDTSDPPTEFEVLTAVALLAFRSAGVE-RVV 135

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAII 246
             +  G      + +     + TN+  DH++    T       K  + +  +P       
Sbjct: 136 WETGLGGRLDATNVVWPHVTAITNVSYDHVEILGPTLVDIAREKAGIVKPGVP---VVTA 192

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD AY + + + A   G R++SVG   +F        +    +               L
Sbjct: 193 CADGAY-RVIERTAARRGSRLVSVGRDVQFTITGAGVRLRGAYRGLFR---DAPSVRLGL 248

Query: 307 PGEFQVYNALVAAGLCIAIG---IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            GE Q  NA V+  + + +G   I  A     L  L  V         +  G  + +D A
Sbjct: 249 CGEHQAQNAAVSLAM-LELGEGRIAEANWERALASLERVRWPLRCEVFDVGGRLVVIDGA 307

Query: 364 HTSNSLEMILKNIRTITSGR----IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           H       + + +R +  G       +VF    D+D   R ++ ++     D  +V   +
Sbjct: 308 HNEEGARTLARALRRLGKGVGANGWRMVFAAFADKD--VRGMLAQMLPLACDALMVRSPH 365

Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLV 463
           PR  DP  + A      P        +  +A++ A++      ++V
Sbjct: 366 PRGADPRALAALACEIRPDLSIHVMSSIEDAVQEALDHPEP--IVV 409


>gi|145640000|ref|ZP_01795598.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittII]
 gi|145270887|gb|EDK10806.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittII]
          Length = 453

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 16/271 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH D     +A    +       +P     +  A +  +KE +     
Sbjct: 178 NPRTLIVNNISFDHADIFDDLKAIQR-QFHHMIRTIPASGLVLSSASEQSAKETLALGCW 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           +  + L     GK          ++     +   G+   +  + + G+  ++NAL+A   
Sbjct: 237 SQQQFL-----GKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAA 291

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G+      + L        R E V     G  +Y D+AH   ++   L  +R    
Sbjct: 292 AHHTGVAIEDACKALGSFVNAKRRLE-VKGEVNGITVYDDFAHHPEAILATLTALRDKVG 350

Query: 382 G--RIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           G  RI+ V          G        AL  AD   +      S +   I  + +   P 
Sbjct: 351 GGVRILAVLEPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQCVQ--PA 408

Query: 439 FIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +     +R+  +   +      D ++V   G
Sbjct: 409 YWNANLDRL--VDMIVAEAQPTDHILVMSNG 437


>gi|70729448|ref|YP_259186.1| folylpolyglutamate synthetase [Pseudomonas fluorescens Pf-5]
 gi|68343747|gb|AAY91353.1| folylpolyglutamate synthetase [Pseudomonas fluorescens Pf-5]
          Length = 435

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 130/385 (33%), Gaps = 42/385 (10%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIY 169
           GK    ++ VTGT+GK S  +FV  + +  GL          +  +          +   
Sbjct: 38  GKPAPRVVTVTGTNGKGSTCAFVASLLRAQGLQVGVYSSPHLLRYNERVQINGVEATDEQ 97

Query: 170 LAKALS----------------------YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           L +A +                      +L  Q      V     G     ++ +     
Sbjct: 98  LCEAFAAVEAGRGEVTLTYFEMGTLAAFWLFQQAALDAVVLEVGLGGRLDTVNLVDADLA 157

Query: 208 SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             T++G DHI+Y   ++++    K  +F           +  D    + ++ +A   GC 
Sbjct: 158 LVTSIGVDHIEYLGDSRESVAFEKAGIFR-----PGAPALCGDLDPPQPLLDKARELGCP 212

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +G+   L         +   +  +GK  +       +  + NA +A    +  G
Sbjct: 213 FF---LRGRDFDLGVTDQHWQWRG--LDAQGKPVELQDLPLLDLPMENAALALQAYLLTG 267

Query: 327 ID--SALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKN-IRTITS 381
           +      +   L +   V GR +    + +G R  + +D  H  ++ + + +   R    
Sbjct: 268 LPWQPERISAALRQ-TRVTGRLDRRQVDWQGKRLNLLLDVGHNPHAAQYLAERLARRPVP 326

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           G+ + VFG   D+D        K A+     A+   D PR+   E ++  + +       
Sbjct: 327 GKRLAVFGLLADKDLEGVIGCLKGAVRH--WAVAPLDTPRARPVEDLQQALENLGASVAS 384

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             +   A+          D +++ G
Sbjct: 385 YSSVAAALEAQCAQATADDEILLFG 409


>gi|320527506|ref|ZP_08028686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Solobacterium
           moorei F0204]
 gi|320132063|gb|EFW24613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Solobacterium
           moorei F0204]
          Length = 436

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 102/294 (34%), Gaps = 36/294 (12%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +    +   + ++E S H L+  R          F NL  +H+D++ T + Y  AK  +F
Sbjct: 148 AIDEMEDGAYAALELSCHQLEICRYS---PKYAVFLNLYEEHLDHYGTMEKYGLAKSHIF 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +  ++  +               H      + +     ++  K + A       T+ 
Sbjct: 205 TNQIQGDTIIM---------------HEEMKDFIKLSINTPYLIGKDITAH----GTTLY 245

Query: 295 VEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +   + D     L GE    N  VA  +   +G+    V++ +     +  R E +G   
Sbjct: 246 IPRHELDVSSARLIGEHNYRNLAVAYFIANKLGVSDKSVMKAIASFRPLAHRLEDLG-EH 304

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +  R   D   T    +  ++ + +I +  +  V   G DR      +            
Sbjct: 305 KEIRFINDSISTIG--QSCIQALESIEN--VDTVLVGGMDRGIEYDEVEDYFHARKDVHV 360

Query: 414 IVTDDNPRSEDPEKIRAEII-HGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I           ++I +E+   G+  PG  +  +  EA+R A ++       V+
Sbjct: 361 IFM-----YATGKRIYSEMEQKGLLRPGLHQVEDLEEAVRLAKKLTRPHHACVL 409


>gi|120437196|ref|YP_862882.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
 gi|117579346|emb|CAL67815.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
          Length = 450

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 115/348 (33%), Gaps = 33/348 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +S            + + P L+       K  S           +  + + G+ GK+S+ 
Sbjct: 59  ISPDLDAVILGMHAKDDNPELIKARELGLKIYSYPEFLYEQSKNKTRVVIGGSHGKTSIT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + +              I      +     +P++L K   ++  +G  ++     
Sbjct: 119 SMILHVMKY---------HEKEIDYMVGASLEGLGNPVHLTKDNDFIVIEGDEYL----- 164

Query: 191 SHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  LD+     + +      + +  DHI+   T + Y   + ++F + +      +   +
Sbjct: 165 SSALDRRPKFHLYQPNIALLSGIAWDHINVFPTYENYVE-QFKIFIDSIINGGILVYNEE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D+  K++ +   N   +                    +     + V   + +    + G+
Sbjct: 224 DSVVKKLAEETENPIRK----------HAYYTPEYHTDGDHTILDVP--EGELPLEIFGK 271

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N   A  +C  +G+D     E +   +    R E V  +     I+ D+AH+ + +
Sbjct: 272 HNLNNLAGAKWICQHMGVDEDDFYEAIATFNGASKRLEKVAESPSSI-IFKDFAHSPSKV 330

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIV 415
                 ++      ++I               +   K +L  AD A+V
Sbjct: 331 SATTAAVKEQFPERKLIACLELHTYSSLNAEFLKEYKDSLAEADEALV 378


>gi|91776048|ref|YP_545804.1| FolC bifunctional protein [Methylobacillus flagellatus KT]
 gi|91710035|gb|ABE49963.1| FolC bifunctional protein [Methylobacillus flagellatus KT]
          Length = 432

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 132/403 (32%), Gaps = 56/403 (13%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------ 151
           + + + L   RL       IL V GT+GK S  + ++ I Q +G                
Sbjct: 29  SLERVELVRQRLCLDPQFPILIVAGTNGKGSTCAMLESIYQAAGYRVGCYTSPHFVRYNE 88

Query: 152 --TISSFAQDNRLTTPSPIYLAKALSY----------------LSSQGVTHVSVEASSHG 193
              I     ++ +   +   + +A                   +    V    +E    G
Sbjct: 89  RVRIGGIEVEDEVLVKAFEAIEQARHETTLTYFEFGTLAAVWSMVEANVDMAILEVGL-G 147

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                ++    +    T++  DH+D+    ++     K  +F   +P      I  DD  
Sbjct: 148 GRLDAVNVFSPVCSIVTSVDLDHMDFLGNDRECIGREKAGVFRRGIP-----AICGDDQP 202

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG---E 309
              +   A +           G  + L         Q           ++L PLP    E
Sbjct: 203 PLSLQAYATDI----------GADLRLIGREFSFQPQGTDWRYRSSTHEYLLPLPALAGE 252

Query: 310 FQVYNALVAA----GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQ+ NA         L   + +    + + L+++  + GRF+         ++ +D AH 
Sbjct: 253 FQLNNAACVINAVDALLGILPVTLEHIQQGLQRV-ALNGRFQLC---RHQPQVILDVAHN 308

Query: 366 SNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            ++   +  N+      GR + VF    D+D     ++   A  +    I    + R  +
Sbjct: 309 PHAAWALASNLVQHPVVGRTLAVFSMLADKDIKG--VVQATAPHVDAWYIAKVAHGRGAE 366

Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAG 466
             ++R  +       +    + I A R A     + D ++V G
Sbjct: 367 ASQLRDSVAQASSRQVSMHADVIAAYRQACNDAGENDRIIVFG 409


>gi|251779235|ref|ZP_04822155.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083550|gb|EES49440.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 458

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 126/361 (34%), Gaps = 61/361 (16%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I  +TG+ GK++  + + ++ Q  G  ++  G   T                 L   +
Sbjct: 117 AKIYGITGSDGKTTTTTIISKMLQEEGYKTWVGGNIGTP----------------LFAQI 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + ++    V +E SS  L       + +     TNL  +H+D H+  Q Y +AK  +F
Sbjct: 161 EEIKAE--DRVVLELSSFQLMTM---NLPMDIAVCTNLAPNHLDMHKDMQEYIDAKKNIF 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------KFIHLKKVCAIHN 287
                      +Y D   +  V +         ++ G++        +F   ++V     
Sbjct: 216 -----------LYQDTTNTLVVNRENE------ITYGFEAEAKGVVREFSSKREVKEGAY 258

Query: 288 KQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +   + + GK+      +  +    V N L A  +     +    + +  E  + V  R
Sbjct: 259 YKDGILYLSGKEVCKKDNIVIKGMHNVENYLAAF-IATKDDVSIENMKKVAESFNGVEHR 317

Query: 346 FEFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E V     G + Y D  A +       LK          +++   G D+     P+  +
Sbjct: 318 CELV-REINGVKYYNDSIASSPTRTLAGLKAFDK-----KVILIAGGYDKHLLFEPLANQ 371

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIP-GFIEKGNRIEAIRTAIEMLNKQDV 461
               + ++ ++       E  + +  ++    GI     E     EA++ A  +  + D+
Sbjct: 372 GYPYIKELILLGQTK---EKIKDVFKDLEASKGIKINISEVSTLEEAVKKAQYLAKQGDI 428

Query: 462 L 462
           +
Sbjct: 429 I 429


>gi|237746936|ref|ZP_04577416.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes HOxBLS]
 gi|229378287|gb|EEO28378.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes HOxBLS]
          Length = 464

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 111/363 (30%), Gaps = 33/363 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +LAV GT GK++  S +  I + +G S    IG        +   R    S  ++ +A  
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILEDAGYSPGFLIGGVPLNFGISARLRGNADSSFFVIEADE 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y ++                       +       NL  DH D      A    +     
Sbjct: 165 YDTAFFDKRSKFVHY------------RPKTAILNNLEFDHADIFSDISAI-ETQFHHLV 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +      I+   D   K V+ R           G  G         A        + +
Sbjct: 212 RTIAGNGRLIVNVRDTALKRVIDR--GCWSEKEWFGGSGNNGW---TLAEAGDDGFVVFL 266

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G       + L GE    NAL A      +G+     +  L +   V  R E +G   R
Sbjct: 267 DGVAQGTVKWELTGEHNRLNALAAIAAARHVGVVPEQAIASLSRFKNVKRRMECLG-EVR 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIR----TITSGRIIVVFGCG-GDRDQGKRPIMGKIALDL 409
           G  +Y D+AH   ++   +  +R         RI+ V          G        +L  
Sbjct: 326 GISVYDDFAHHPTAIAATIAGLRRKIGARNHTRILAVLEPRSNTMKLGTMKQKLPHSLAE 385

Query: 410 ADIAI----VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD+       +  N    D ++    +      F +  + +  I   +      D ++V 
Sbjct: 386 ADLVFGYGAHSGKNALGWDLQEALGPLGEKARAFEDIDSLVTEI---VSSARAGDHILVM 442

Query: 466 GKG 468
             G
Sbjct: 443 SNG 445


>gi|145628987|ref|ZP_01784786.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 22.1-21]
 gi|148827263|ref|YP_001292016.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittGG]
 gi|144978490|gb|EDJ88213.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 22.1-21]
 gi|148718505|gb|ABQ99632.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittGG]
          Length = 453

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 16/271 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH D     +A    +       +P     +  A +  +KE +     
Sbjct: 178 NPRTLIVNNISFDHADIFDDLKAIQR-QFHHMIRTIPASGLVLSSASEQSAKETLALGCW 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           +  + L     GK          ++     +   G+   +  + + G+  ++NAL+A   
Sbjct: 237 SQQQFL-----GKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIAA 291

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G+      + L        R E V     G  +Y D+AH   ++   L  +R    
Sbjct: 292 AHHTGVAIEDACKALGSFVNAKRRLE-VKGEVNGITVYDDFAHHPEAILATLTALRDKVG 350

Query: 382 G--RIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           G  RI+ V          G        AL  AD   +      S +   I  + +   P 
Sbjct: 351 GGVRILAVLEPRSNTMKMGVHKDDIAPALGRADEVFMLQPEQLSWEVADIANQCVQ--PA 408

Query: 439 FIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +     +R+  +   +      D ++V   G
Sbjct: 409 YWNANLDRL--VDMIVAEAQPTDHILVMSNG 437


>gi|50842243|ref|YP_055470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Propionibacterium acnes KPA171202]
 gi|62900680|sp|Q6A9Q4|MURD_PROAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50839845|gb|AAT82512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes KPA171202]
          Length = 493

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 141/418 (33%), Gaps = 68/418 (16%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS  +  +    +  +    P+             A RL   HP+ ++     +G + 
Sbjct: 88  VVVSPGWRPTQPLVARALTRGIPVWGEP-------ELAWRLM--HPDRVIPWLAITGTNG 138

Query: 129 VA---SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                   + I   +GL +  +G                       + +    +  + + 
Sbjct: 139 KTTTTQMTESILHAAGLKACAVGNIG--------------------RPILEAMADEINYD 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA----YFNAKMRLFEELLPKE 241
                      H  + + L + +  NL +DH++++  +      Y   K R++ ++    
Sbjct: 179 VFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKARIYHQVTNS- 237

Query: 242 SPAIIYADDAYSKEVMKRA---HNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQVTIS 294
              +    D  ++ +++ A     A     + G  G  +        V     +Q+ T +
Sbjct: 238 --CVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQRATSA 295

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E    + + P      V NAL AA L  + G+ +  V + L  LH+   R E V     
Sbjct: 296 MELARLEDVHPFAP-HNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQA-- 352

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GG  +VD +  +N          ++ +   IV    G  +      ++   A  L  + +
Sbjct: 353 GGITWVDDSKATNP----HAANSSMRAFEHIVWIAGGQAKGTHFDNLVTTHAGKLRGVVV 408

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIE---AIRTAIEMLNKQDVLVVA 465
           +  D         I   +    P      I+  +R     A+  A +M    D +++A
Sbjct: 409 LGTDR------GIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTVLMA 460


>gi|260495142|ref|ZP_05815270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
 gi|260197199|gb|EEW94718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
          Length = 432

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 138/397 (34%), Gaps = 60/397 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +  +    ++A+TGT+GKS+  + +  +   +G  +   G                    
Sbjct: 85  MEKRMKTKVIAITGTNGKSTTTAKISDMLNYAGYKAAYAGNIG----------------R 128

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L++ L  L  + +  +S+E SS  L+   ++  K       N+G DHI+ +++   Y++
Sbjct: 129 SLSEVL--LKEKDLDFISLELSSFQLEN--IENFKPYISMIINMGPDHIERYKSFDEYYD 184

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K  + +    ++   I   DD    E+ KRA     + +SV    K     +   I + 
Sbjct: 185 TKFNITKNQT-EDFYFIENIDDV---EIEKRAKQVKAKRISVSKFKKADIFVENDKICHG 240

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +   I V+         L G   + N L        + ID   + E L     +  R E 
Sbjct: 241 KDSIIDVD------KLSLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTEL 294

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                +   I    A   +S          I + +  ++   G D+     P+   I  +
Sbjct: 295 FFNYGKLKFINDSKATNVDS------TKFAIEANKNSILICGGYDKGVDLAPLAEMIKEN 348

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-----------LN 457
           + ++ ++            I  +I   +     + +R   I   + +             
Sbjct: 349 IKEVYLI----------GVIADKIESELKKVGYEDSR---IHKLVNLENSLQDMKKRFTK 395

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             D +++      +     + E +  V  +++ +I G
Sbjct: 396 DSDEVILLSPATSSYDQFNSFEHRGKVFKELVLKIFG 432


>gi|331001074|ref|ZP_08324705.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569379|gb|EGG51157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 477

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 94/287 (32%), Gaps = 22/287 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS  L+    + +   + +  N+  DHID+H + + Y  AK ++F      ++
Sbjct: 173 DFWVLELSSFQLE--TTESLHCDSAALLNITEDHIDWHGSMEKYAAAKRKIFSA----DT 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDF 300
             ++  +D  S    +   +            K     +  V A+        S   +  
Sbjct: 227 VRVLNREDPGSMLSAEGVPSDLVHTFGSDAPKKIGDFGISDVGALVWLSGCIASASPELL 286

Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +  L         NA+ A  L +A+GI    +L  L +    P R + +   S     
Sbjct: 287 IPMNALRIRGLHNAMNAMAATALTLAVGIPLDSILRMLREYKGEPHRVQLILRASD---- 342

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTD 417
            +DY   S    +          G   VV   GGD + Q   P+   I         +  
Sbjct: 343 -IDYVDDSKGTNVGAVAAALAGFGPKKVVLILGGDGKGQDFAPLKAPIETHAKGAVFIGR 401

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D P  E        +              EA+R A  M    D +++
Sbjct: 402 DAPLIEKEVDYPGLLKAHAKTM------AEAVREARAMAKPGDTILL 442


>gi|313813209|gb|EFS50923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL025PA1]
 gi|315107076|gb|EFT79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL030PA1]
          Length = 498

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 141/418 (33%), Gaps = 68/418 (16%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS  +  +    +  +    P+             A RL   HP+ ++     +G + 
Sbjct: 93  VVVSPGWRPTQPLVARALTRGIPVWGEP-------ELAWRLM--HPDRVIPWLAITGTNG 143

Query: 129 VA---SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                   + I   +GL +  +G                       + +    +  + + 
Sbjct: 144 KTTTTQMTESILHAAGLKACAVGNIG--------------------RPILEAMADEINYD 183

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA----YFNAKMRLFEELLPKE 241
                      H  + + L + +  NL +DH++++  +      Y   K R++ ++    
Sbjct: 184 VFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKARIYHQVTNS- 242

Query: 242 SPAIIYADDAYSKEVMKRA---HNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQVTIS 294
              +    D  ++ +++ A     A     + G  G  +        V     +Q+ T +
Sbjct: 243 --CVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQRATSA 300

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +E    + + P      V NAL AA L  + G+ +  V + L  LH+   R E V     
Sbjct: 301 MELARLEDVHPFAP-HNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQA-- 357

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GG  +VD +  +N          ++ +   IV    G  +      ++   A  L  + +
Sbjct: 358 GGITWVDDSKATNP----HAANSSMRAFEHIVWIAGGQAKGTHFDNLVTTHAGKLRGVVV 413

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIE---AIRTAIEMLNKQDVLVVA 465
           +  D         I   +    P      I+  +R     A+  A +M    D +++A
Sbjct: 414 LGTDR------GIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTVLMA 465


>gi|239817426|ref|YP_002946336.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
 gi|239804003|gb|ACS21070.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
          Length = 1024

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 133/406 (32%), Gaps = 42/406 (10%)

Query: 68   AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG-K 126
            A A++ +      D +  +    P+L VD+  + +    +    +    +  V G+    
Sbjct: 631  AAAVLCT------DPAPHLDKRVPVLQVDDVPQAVLALGAHARTEFTGRVCGVLGSGTAG 684

Query: 127  SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
            S+VA+ +       G      G  S  S  A +              L+ +       V 
Sbjct: 685  STVAAMLADALAVWGEVGRPEGNVSLPSGMAWN--------------LTCMPRHAAYWVL 730

Query: 187  VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               S H L   +L  ++ +    T L      +    +A  +   R+FE + P +S A++
Sbjct: 731  EMGSPHMLATAQL--VRPMLAVVTGLSAASQKHRGPSEAAAHMDSRIFEGMAPGDS-AVL 787

Query: 247  YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D        + A     ++++ G               +  +V   V G+ F      
Sbjct: 788  NRDLPEFATFAEAAMAHQLQIVTYGEHKD---ADVRLLSFDHGEVQAQVLGEPFQLRLNA 844

Query: 307  PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYA 363
            PG     +A+ A     A+ +  A  +E   +     GR      +  GG    I   Y 
Sbjct: 845  PGRHMGASAVAALAALQAMRLKLAAAVEPFAQFEPPGGRGALHTIHIGGGSFKLIDETYD 904

Query: 364  HTSNSLEMILK--NIRTITSGRIIVVFGCGGDRDQ----GKRPIMGKIALDLADIAIVTD 417
               +S+   L+  +       R + + G   +           +  ++     D  ++  
Sbjct: 905  ANPSSMRAALELLSQAPCEPARRVAILGDMQELGPAAQRHHLDLEPELLASQPDRVLLCG 964

Query: 418  DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               R+    +IR ++      F++  +   A+     +L   D ++
Sbjct: 965  PLMRALH-ARIRTKVRSH--WFVDVSDLSTALG---GLLQPGDWVL 1004


>gi|5834372|gb|AAD53938.1|AF179611_22 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 269

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 27/204 (13%)

Query: 67  GAEAIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123
           G  A VVS    + +   A +     I ++ +   F    A   + +H     ++ +TGT
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIGDIELFAQ--AHGFWERHGRRCPVVGITGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +  I + +GL +   G                         L+        
Sbjct: 131 NGKSTTTALIHHILKEAGLPTLMGGNIGL-------------------PLLAADPLPDGG 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +       TN+  DH+D H   + Y  AK RLF  L      
Sbjct: 172 VYVLELSSYQIDLTFT--LDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFL-LQSSPHY 228

Query: 244 AIIYADDAYSKEVMKRAHNAGCRV 267
           A+I  DD  S+ + K++      V
Sbjct: 229 AVIATDDIPSQVIAKQSAAHLVTV 252


>gi|15618810|ref|NP_225096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae CWL029]
 gi|16752135|ref|NP_445502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae AR39]
 gi|33242264|ref|NP_877205.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae TW-183]
 gi|30316148|sp|Q9Z705|MURD_CHLPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4377221|gb|AAD19039.1| Muramoylalanine-Glutamate Ligase [Chlamydophila pneumoniae CWL029]
 gi|7189877|gb|AAF38745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae AR39]
 gi|33236775|gb|AAP98862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae TW-183]
          Length = 417

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 149/426 (34%), Gaps = 72/426 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S              +  I VV + +  L    +  + ++P     +TG++GK++  
Sbjct: 62  VIRSPGIKPYHPWVEQAVSLKIPVVTDIQVALK---TPEFQRYPS--FGITGSNGKTTTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F+  +    G+ +  +G                         L ++   GV    VE S
Sbjct: 117 LFLTHLLNTLGIPAIAMGNIGL-------------------PILDHMGQPGVRV--VEIS 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L         L    F N  R+H+DYH+   AYF+AK+R+ ++ L ++    ++ + 
Sbjct: 156 SFQLATQEEHIPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRI-QKCLRQDKTFWVWEEC 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +                    YQ   I+ +++  I +K                      
Sbjct: 215 SLGN----------------SYQ---IYSEEIEEILDKGDA------------LKPIYLH 243

Query: 311 QVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              N   A  L   +G +     L+ +        R E++G       I    A T  ++
Sbjct: 244 DRDNYCAAYALANEVGWVSPEGFLKAIRTFEKPAHRLEYLGKKDGVHYINDSKATTVTAV 303

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  +     G+ ++V   G D+  G  P +  +        I        E  + I 
Sbjct: 304 EKALMAV-----GKDVIVILGGKDKG-GDFPALASVLSQTTKHVIAM-----GECRQTIA 352

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             +   IP  + K +  EA+  A  +  + D ++++  G  +     + +++ +    +I
Sbjct: 353 DALSEKIPLTLSK-DLQEAVSIAQTIAQEGDTVLLS-PGCASFDQFQSFKERGAYFKLLI 410

Query: 490 REILGL 495
           RE+  +
Sbjct: 411 REMQAV 416


>gi|152984122|ref|YP_001346475.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PA7]
 gi|150959280|gb|ABR81305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pseudomonas aeruginosa PA7]
          Length = 455

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 105/318 (33%), Gaps = 28/318 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+ +A S  + +     N  +  V          A  +       +LAV GT GK++  
Sbjct: 65  VVIGNALSRGNPAVEHVLNKGLPYVSGP----QWLADHVL--QGRWVLAVAGTHGKTTTT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  + + +G+S   +     +      +     +P ++ +A  Y S+           
Sbjct: 119 SMLAWVLEHAGMSPGFL--IGGVPQNFGVSARLGGTPFFVVEADEYDSAFFDKRSKFVHY 176

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +       NL  DH D      A       L    +P E   I  + +
Sbjct: 177 ------------RPRTAILNNLEFDHADIFPDLAAIERQFHHLV-RTVPGEGLIIRPSAE 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
              + V++        V + G  G++   +      +  +  +  +G    +  +PL G 
Sbjct: 224 EALERVLEM--GCWTPVQTTGEGGQW---QARLLAEDGSRFEVLFDGVLQGEVNWPLSGL 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL +      +G+        L     V  R E V     G  I+ D+AH   ++
Sbjct: 279 HNVANALASLAAARHVGVLPDQGAAALSAFRNVKRRMEKV-AEVDGVTIFDDFAHHPTAI 337

Query: 370 EMILKNIRTITSGRIIVV 387
              L  +R        V+
Sbjct: 338 ATTLDGLRKRVGADTQVI 355


>gi|312622287|ref|YP_004023900.1| folc bifunctional protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202754|gb|ADQ46081.1| FolC bifunctional protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 437

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 132/392 (33%), Gaps = 43/392 (10%)

Query: 109 LYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF--------QIGPTSTISSFAQ 158
             G   +   ++ V GT+GK S  +F+ Q+   +G                   +++   
Sbjct: 36  FMGNPQKGLKVIHVAGTNGKGSTCAFINQMLIEAGFRVGLYTSPFLESFNERIKLNNQPI 95

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH------------------RLD 200
           DN+       ++ + +  +  QG +H +       +                     R D
Sbjct: 96  DNQELASITEFVKERIEEMIRQGFSHPTEFEVVTAIGFEFFKRKNVDFVVLEVGLGGRFD 155

Query: 201 GI----KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                        T++G DH+D    T +     K  + ++          Y      KE
Sbjct: 156 ATNVVENPEICVITSIGFDHMDILGSTIEKIAFEKAGIIKQNTKVILALQRY---EKVKE 212

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           V+ +        L +  +  +  LK          VT   +G   +    L G  QV NA
Sbjct: 213 VISKVCKEQNAQL-IEVERNYHVLKNTLEGIVFDCVT--PKGIYKNLEIKLLGTHQVENA 269

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +   +     +  E L K  +                + +D AH  + ++++++N
Sbjct: 270 LNCVYVYECLKEKYDIKTEALIKGLLNARWNGRFEVLIDTPLVVLDGAHNVDGMKVLVEN 329

Query: 376 IR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +  +   +I+ V G   D++  K   + K         +V        + E +  EI H
Sbjct: 330 CKIYLNDKKIVAVVGILKDKEYEKMISLIKSVAQRVIFTLVPSQKRAFSEKEAL--EISH 387

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              G     +  EAI+ A+ + N+ D +++ G
Sbjct: 388 KC-GVEFVPDFREAIKYALGLCNEDDAVIICG 418


>gi|218442054|ref|YP_002380383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 7424]
 gi|226711905|sp|B7KH28|MURD_CYAP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218174782|gb|ACK73515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7424]
          Length = 449

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 129/381 (33%), Gaps = 46/381 (12%)

Query: 74  SSAYSLQDFSATIRSNTPILVVD-----NTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
               +L   S  +  + P+LV       +T   L L    L G    + + +TGT+GK++
Sbjct: 63  EDLPNLIVVSPGVPWDIPVLVEARDQGIDTIGELELAWRYLNG---CSWVGITGTNGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + +  I + +GL++   G                        A   L+    ++  + 
Sbjct: 120 TTALIAAIFKAAGLNAPACGNIG--------------------YAACELALTQQSYDWII 159

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A            +    G +T    DH++ H+T   Y+  K  L    L +    I   
Sbjct: 160 AEISSYQIESSATLSPKIGIWTTFTPDHLERHKTLDNYYQIKASL----LSRCRRQIFNG 215

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPL 306
           DD Y   +     +          +GK   L         Q   I   G+      LF +
Sbjct: 216 DDPYLHNI---GLSQWKDSYWTSVKGKEALLCDPSKGIYLQDNWIVAFGELIAPINLFKM 272

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE    N L+A G      I+   + E +     VP R E + T +    I    A   
Sbjct: 273 VGEHNQQNLLMAVGAARLADINKDAIAEAMATFSGVPHRLELIRTIAGVDYINDSKATNY 332

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP----RS 422
           ++ ++ L ++        +++   G  +       +  I   +A + ++ +       R 
Sbjct: 333 DAAQVGLSSVEA-----PVILIAGGQAKKGDDTEWIKLIKAKVATVLLIGEAASTFAQRL 387

Query: 423 EDPEKIRAEIIHGIPGFIEKG 443
           ++ +    EI+  +   +E+ 
Sbjct: 388 QESDYYAYEIVETMENAVERS 408


>gi|148926962|ref|ZP_01810639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845046|gb|EDK22143.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 389

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 125/358 (34%), Gaps = 57/358 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +T + GK+S+ +F+ ++ +    S       +T+     D          +  A +
Sbjct: 70  KIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIIADINANLSQDTQIYIAEA 129

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G     ++  +H         ++        +G  H++Y ++ +   + K+    
Sbjct: 130 GARLKG----DIDEITH--------FLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALN 177

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQ 290
                                 KR   A     +   + K        L  + +     +
Sbjct: 178 S---------------------KRLEKAFLHSSTQKEEDKLISLYDDKLSLIHSSLEGLE 216

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             + +E K +DF   + G+F   N  V       +GI    + + +  ++ V  R + + 
Sbjct: 217 FKVDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQVL- 275

Query: 351 TNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             SR  +  +D     N   +    K  ++   GR ++V     +  + +   + KI  +
Sbjct: 276 --SREPKFIIDDGFNGNFKGMSTSYKLCKSY-KGRKVLVSPGIVEVSEEENIKLAKIINE 332

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             D+AI++          +I AEI      I   I K  + + ++T  +     D+++
Sbjct: 333 CFDLAIIS---------AQINAEIFKKELKIKTIILKE-KSQLVQTLAKETKHGDLIL 380


>gi|312795114|ref|YP_004028036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Burkholderia rhizoxinica HKI
           454]
 gi|312166889|emb|CBW73892.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (EC 6.3.2.-) [Burkholderia rhizoxinica HKI 454]
          Length = 464

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 100/306 (32%), Gaps = 28/306 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAV GT GK+S AS +  + + +G++   +     I     +  ++           + 
Sbjct: 105 VLAVAGTHGKTSTASMLAWLLEDAGMNPGFL-----IGGVPLNFGIS-----------AR 148

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           L+      +  +         R   +  +       NL  DH D      A    +    
Sbjct: 149 LTDSSFFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDNLAAI-ETQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P+    ++   D   + V+ R       V   G +G +  L    A    ++  + 
Sbjct: 208 VRTIPRTGRLVVNGTDDALQRVLAR--GCWSEVERFGVEGGWQVLPADEASPADERFAVY 265

Query: 295 VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +    + + L GE    NAL A      +G+ +      L     V  R E  G + 
Sbjct: 266 WRAQRVGVVNWSLQGEHNRMNALAAIAAAHNVGVPAVQAATSLGGFRNVKRRMEVRG-SI 324

Query: 354 RGGRIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALD 408
            G  IY D+AH  +++      L+          I+              +  +   +L 
Sbjct: 325 DGVTIYDDFAHHPSAIGTTIAGLRTRIGDAPHARILAVLEPRSNTMKLGTMKAQLPASLA 384

Query: 409 LADIAI 414
            AD+  
Sbjct: 385 GADLVF 390


>gi|254478616|ref|ZP_05091989.1| FolC bifunctional protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035470|gb|EEB76171.1| FolC bifunctional protein [Carboxydibrachium pacificum DSM 12653]
          Length = 428

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 139/410 (33%), Gaps = 62/410 (15%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152
           +N R+ L         +    I+ V GT+GK S +SF+  I + +G              
Sbjct: 23  ENIRRLLGYIG---NPEKNLKIIHVAGTNGKGSTSSFISSILKEAGYKVALYTSPYLEEF 79

Query: 153 -----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR-----LDGI 202
                I+              Y+   ++ +  +G  H +       +         +D +
Sbjct: 80  EERMKINGENISREKLVYYVEYIKPIIARMVREGYNHPTEFEVITAIAFKYFSDEEVDFV 139

Query: 203 KLIAG-----------------SFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            L  G                   T++  DH+D    T       K      ++ K+   
Sbjct: 140 VLEVGLGGRFDATNAISSSLVSVITSIDYDHMDKLGNTLGDIAYEKA----GIIKKKGVV 195

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + +     + +V+  A       L+V      +    V          +       D   
Sbjct: 196 VSFYQQEEALKVINDACEVKEAYLTV------LDKSNVVIKEQNSDFQVFDYKNFKDLKI 249

Query: 305 PLPGEFQVYNALVAAGLCIAIG------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            L G  Q+YNA +A  +   +       I+   +   L       GR E +        +
Sbjct: 250 TLLGTHQIYNASLAVEVIQKLKNIYGYRIEEEAIKRGLMSAKWP-GRLEVMKKR---PYV 305

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +D AH    + ++ ++++     R+I+V G   D++  K      I   +AD+ I T  
Sbjct: 306 VIDGAHNPQGMTVLKESLKLFNYRRLILVIGMLKDKEVNKML---NIITPVADVIITTT- 361

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIE-AIRTAIEMLNKQDVLVVAG 466
            P S D      ++   I    +   ++I+ A+  A++M  ++D+++  G
Sbjct: 362 -PLS-DRAYSAKDLASKISRNSVFAVDQIDKAVNEALKMAGEEDMVLFCG 409


>gi|256827370|ref|YP_003151329.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cryptobacterium
           curtum DSM 15641]
 gi|256583513|gb|ACU94647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cryptobacterium
           curtum DSM 15641]
          Length = 541

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 109/333 (32%), Gaps = 42/333 (12%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +          +A+TGT+GK++  +    I Q++G+ +  +G                  
Sbjct: 117 AWRESDRDSRWIAITGTNGKTTTTALTAHILQQAGMRARAVGNIG--------------- 161

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                  L+ + +        E SS+ L                N+  DH+ +HQT + Y
Sbjct: 162 ----DTCLAAVMAHDTDVYVAEVSSYQLAS--TIHFAPNVAVILNITPDHLTWHQTHENY 215

Query: 227 FNAKMRLFEELLPKESP-AIIYADDAYSK-EVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
             AK R+   L       A++ A D   +  V   AH       +    G    L     
Sbjct: 216 VAAKFRILANLNQTPGALAVLNAVDETVRARVRTLAHATEQCGFAYIPVGTAAGLAGDMR 275

Query: 285 IHNKQQVTISVEGKDFDFLFPL---------------PGEFQVYNALVAAGLCIAIGIDS 329
                +    +EG D      L               PGE  V NAL AA  CIA+G   
Sbjct: 276 TICGSENAAFIEGSDRWLTVALAKEQHRLCRADDLLIPGEHNVSNALAAATACIAVGASD 335

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   L     +  R E  GT  RG   Y D   T+  ++  LK +   +  R I V  
Sbjct: 336 DAITRGLTTFTALSHRLEACGT-IRGVTCYDDSKATN--VDATLKALAAFSPRRPI-VLL 391

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            G D+      ++ +       +        R 
Sbjct: 392 GGSDKFTDLTVLVQEACRHCKTVVCFGAAGERF 424


>gi|189183580|ref|YP_001937365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189180351|dbj|BAG40131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 472

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 119/365 (32%), Gaps = 53/365 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    + +TGT+GKS+ ++ +  I               T+++   D        +
Sbjct: 107 YNEYPNRKYIGITGTNGKSTTSTLIHHIL--------------TLTNGKFDLGGNIGKAV 152

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
              +         V    +E SS  LD   +  +KL      N+  DHID + +   Y  
Sbjct: 153 LSLR-------NNVEGYVLELSSFQLDL--ITDLKLDIAVLLNITADHIDRYYSFDQYIL 203

Query: 229 AKMRLFE-------ELLPKESPAIIYADDAYSKEVMKRAHNAGC------RVLSVGYQGK 275
           +K ++          L+ KE   I  A+  Y+     +  N  C      + ++     K
Sbjct: 204 SKQKILSLATKNGYALISKECSIISNAN--YNTLYASKFRNTTCSLELIKKAINTDELNK 261

Query: 276 FIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
            I  + +        V  S    +  +F   L G+    N   A   C  +G +   +  
Sbjct: 262 SIADESINCQSQPTLVKFSSHLPQHINFTSLLLGKHNNQNIAAAFYACKILGRNEYDITS 321

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            + +   +P R +++G  +    IY D   T+   +   K + ++++   I     G  +
Sbjct: 322 AINQFQPLPHRMQYIGKKNN-IHIYNDSKATNA--DAASKALLSLSNIYWIA---GGVAK 375

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           + G   I+  +                        AE + G+  F       EA   AI 
Sbjct: 376 EGGVNSIVNTLYEVKKAYLYGQSRYA--------LAETLKGVVAFSINNTMEEAFNQAII 427

Query: 455 MLNKQ 459
                
Sbjct: 428 DAESD 432


>gi|126662284|ref|ZP_01733283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Flavobacteria bacterium BAL38]
 gi|126625663|gb|EAZ96352.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Flavobacteria bacterium BAL38]
          Length = 451

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 110/347 (31%), Gaps = 31/347 (8%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++           +++ P L+       K  S           +  + + G+ GK+++ 
Sbjct: 59  ITTDIEAIILGMHAKADNPELLKAQELGLKIYSYPEFLYEQSKNKTRVVIGGSHGKTTIT 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     +    I     + +                  L+  +   V       +
Sbjct: 119 SMILHV-----MHYHNIEVDYMVGA--------QLEGFDTMVHLTEDNDFIVLEGDEYLT 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S    + +    +      + +  DHI+   T   Y   + R+F   + +    +   +D
Sbjct: 166 SPIDLRPKFHLYQPNIALLSGIAWDHINVFPTFDNYVE-QFRIFANQITRGGILVYNEED 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K V +   N   ++                  +  +  T  ++  +      + G  
Sbjct: 225 EAVKAVAEETENQIRKI------------AYQTPSYTVENGTTLLDTPEGPMPIEVFGAH 272

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N   A  +C  +G+D A   E +        R E +  ++     Y D+AH+ + + 
Sbjct: 273 NLSNLAGAKWICQCMGVDEAEFYEAIASFKGASKRLEKIAESANKVA-YKDFAHSPSKVS 331

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415
              K ++     R +V               + +   ALD AD+A+V
Sbjct: 332 ATTKAVKAQYPDRKVVACLELHTYSSLNAEFLKEYQGALDAADVAVV 378


>gi|283957222|ref|ZP_06374684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791294|gb|EFC30101.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 475

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 123/358 (34%), Gaps = 57/358 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +T + GK+S+ +F+ ++ +    S       +T+     D          +     
Sbjct: 156 KIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQI----- 210

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A   G        ++        +G  H++Y ++ +   + K+    
Sbjct: 211 YIAEAG-------ARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQ 290
                                 KR   A     +   + K        L  + +     +
Sbjct: 264 S---------------------KRLEKAFLHSSTKKEEDKLISLYDDKLNLIHSSLEGLE 302

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             + +E K +DF   + G+F   N  V       +G+    + + +  ++ V  R + + 
Sbjct: 303 FKVDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGVKLEKIQKQVLNINSVEHRLQVL- 361

Query: 351 TNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             SR  +  +D     N   +    +  ++   GR ++V     +  + +   + KI  +
Sbjct: 362 --SREPKFIIDDGFNGNFKGMSTSYELCKSY-KGRKVLVSPGIVEVSEEENIKLAKIINE 418

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             D+AI++          +I AEI      I   I K  + + ++T  +     D+++
Sbjct: 419 CFDLAIIS---------AQINAEIFKKELKIKTIILKE-KSQLVQTLAKETKNGDLIL 466


>gi|91786994|ref|YP_547946.1| UDP-N-acetylmuramate [Polaromonas sp. JS666]
 gi|91696219|gb|ABE43048.1| UDP-N-acetylmuramate [Polaromonas sp. JS666]
          Length = 475

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 115/369 (31%), Gaps = 40/369 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P ++LAV GT GK++  + +  I +++GL    +     +     +  ++          
Sbjct: 118 PRHVLAVAGTHGKTTTTAMLTWILEQAGLQPGFL-----VGGVPLNFGVS---------- 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            + L       +  +         R   +  +       NL  DH D             
Sbjct: 163 -ARLGEGNTFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLADIERQFQ 221

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L    +P +   ++ A +   + V+ +     C    V +    ++     A       
Sbjct: 222 HLV-RTVPSQGRIVVNAGEESLRRVLAQG----CWSEQVLFGNSPLNQSGFTAQGEPNDF 276

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE--- 347
            +   G+      + + G     NAL A      +G+   +    L +   V  R E   
Sbjct: 277 KVLKAGQAVAHVQWGISGVHNQLNALAAIAAAEHVGVPPEVAARALAEFQNVKRRMEVRG 336

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIM 402
            V  +     +Y D+AH   ++   +  +R         G  I+              + 
Sbjct: 337 VVHAHGGDITVYDDFAHHPTAIHTTVDGLRRQLKGAGKDGDRILAIFEPRSNTMKLGSMT 396

Query: 403 GKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQ 459
            ++  +L+ AD+A     +    D +   A +  G     +  + I+  +          
Sbjct: 397 AQLPWSLEQADLAFC---HAGGLDWDARAALMPMGARA--QVADNIDQLVAQVKASARPG 451

Query: 460 DVLVVAGKG 468
           D L+    G
Sbjct: 452 DHLLCMSNG 460


>gi|153951182|ref|YP_001398284.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938628|gb|ABS43369.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 475

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 122/358 (34%), Gaps = 57/358 (15%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +T + GK+S+ +F+ ++ +    S       +T+     D          +     
Sbjct: 156 KIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDAQI----- 210

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y++  G       A   G        ++        +G  H++Y ++ +   + K+    
Sbjct: 211 YIAEAG-------ARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALN 263

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQ 290
                                 KR   A     +   + K        L  + +     +
Sbjct: 264 S---------------------KRLEKAFLHSSTQKKEDKLISLYDDKLNLIHSSLEGLE 302

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +++E K +DF   + G+F   N  V         I    + + +  ++ V  R + + 
Sbjct: 303 FRVNMESKSYDFKSQILGDFNAQNLCVCILCAHYFDIKLEKIQKQVLNINSVEHRLQVL- 361

Query: 351 TNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             SR  +  +D     N   +    +  +    GR ++V     +  + +   + KI  +
Sbjct: 362 --SREPKFIIDDGFNGNFKGMSTSYELCKNY-KGRKVLVSPGIVEVSEEENIKLAKIINE 418

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             D+AI++          +I AEI      IP  I K  + E I+T  +     D+++
Sbjct: 419 CFDLAIIS---------AQINAEIFKRELKIPTIILKE-KSELIQTLAKETKNGDLIL 466


>gi|288560374|ref|YP_003423860.1| cell wall biosynthesis protein Mur ligase family
           [Methanobrevibacter ruminantium M1]
 gi|288543084|gb|ADC46968.1| cell wall biosynthesis protein Mur ligase family
           [Methanobrevibacter ruminantium M1]
          Length = 443

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 129/375 (34%), Gaps = 63/375 (16%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            + VTGT+GK++  S +++I + +G +    G          D              +  
Sbjct: 115 TIGVTGTNGKTTTVSMIKEILENAGKNVLVGGNGGGGFEGYYD-------------LILE 161

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +    + +E     +   R         + TN+G DH+D H + + Y ++    F  
Sbjct: 162 ADEEEYDVLLIEVCDMTVGFCR-YCFDFDIIALTNMGNDHMDVHGSMEGYKDSLKEFF-- 218

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K+    +  +  + +   +         +  G                         
Sbjct: 219 ---KDKTIFLNKNPEFPESFKEEFIGISKNTIEYG------------------------- 250

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIG-----IDSALVLEHLEKLHVVPGRFEFVGT 351
             + D+   L G F   NA ++  L   I      ID  ++   LE    V GR E +  
Sbjct: 251 --ETDYEIDLFGRFNRLNAGLSQSLSEYINENVFEIDEEIIKTSLENFKPVKGRLELLKL 308

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N     IY+  +  S+++++IL  +         +  G     +  +  I+ ++     D
Sbjct: 309 ND--CTIYIGKSDNSDAIKVILDEVD-----FTAIFIGTPRHNENHRLDILNEVVNANPD 361

Query: 412 IAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+    P  ED   + I    +    G IE  N ++ I   +   +    + + G G 
Sbjct: 362 AIIL---FPGLEDTLDQAIYRLGLLNYDGRIEIANNLDEIVAFVAEFSHDPAIFIGGNGQ 418

Query: 470 ETVHIVTNGEKKMSV 484
           ET+  + +  ++++ 
Sbjct: 419 ETIIKIQDRLREIAD 433


>gi|210621753|ref|ZP_03292802.1| hypothetical protein CLOHIR_00747 [Clostridium hiranonis DSM 13275]
 gi|210154635|gb|EEA85641.1| hypothetical protein CLOHIR_00747 [Clostridium hiranonis DSM 13275]
          Length = 432

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 144/412 (34%), Gaps = 58/412 (14%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152
           ++T K + L       +   NI+ V GT+GK S+ SF+ ++ ++SG              
Sbjct: 23  ESTEKLMELLG---NPQDELNIIHVAGTNGKGSICSFIAKVLEKSGYKVGLFTSPYLEVF 79

Query: 153 -----ISSFAQDNRLTTPSPIYLAKALSYLSSQG----------------------VTHV 185
                I+     +     S   +   +  + ++G                      V + 
Sbjct: 80  NERIRINGENITDEHIAKSVSEVKLRIDKMLAEGYDSPTEFEIVTAMAFLIYKWENVDYA 139

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            +E    G           +     ++  DH      T       K      ++ K S  
Sbjct: 140 VMEVGLGGRYDSTNIIKNPLVSVIASISLDHTRVLGDTIAKIAYEKG----GIIKKNSAV 195

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           ++Y+    +++V+K+             +  F  +       + Q    S+ GK+F D  
Sbjct: 196 VVYSQGDEAEDVLKKIAAEENAEF---IEADFSSINVKKDDVHSQIFDFSINGKEFKDME 252

Query: 304 FPLPGEFQVYNALVAAGLCIAI-------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             L GE QV N + A      +        I    V   + +     GR E V  N    
Sbjct: 253 IKLIGEHQVRNCVTALNAIDYLRRSGKVANITDDSVKAGILETKWP-GRVEKVMEN---P 308

Query: 357 RIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              +D AH  +    + K + +      ++++ G   D+D        +I + + D  +V
Sbjct: 309 TFIIDGAHNEDGARSLRKVLDKYFADRNLVLMLGMLEDKDIDTVL---EILMPVFDRVVV 365

Query: 416 TD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           T+ DNPR    +K++A+I              +A+   +E+  + +V++ AG
Sbjct: 366 TEPDNPRKISADKLKAKIEKYTGNVEAVEKIEDALERVLEVAEEGNVVISAG 417


>gi|86607791|ref|YP_476553.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|118595698|sp|Q2JHP5|MURD_SYNJB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86556333|gb|ABD01290.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 480

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 139/402 (34%), Gaps = 43/402 (10%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A+G + +VVS   +             I VV       +  A       P   + +TGT
Sbjct: 59  LAEGVKQVVVSPGIAWDHPLLQAVRQQGIPVVGE-----AELAWIYLDHLP--WVGITGT 111

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GKS+  + V ++ + +GL     G     +S  A         P ++   LS       
Sbjct: 112 NGKSTTTALVAEMFKAAGLQGIPCGNIGLPLSQVALATLQGKLKPDWIVAELSS------ 165

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +EASS         G     G +T    DH++ H T + Y + K RL    L +  
Sbjct: 166 --YQLEASSR--LMSSTPGGPPRIGVWTTFTPDHLERHGTLERYASFKARL----LDRAQ 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF- 300
             ++  +D Y    + R      +   +     +    +   A  + ++  + ++G+   
Sbjct: 218 WRVLNGEDPY----LCRRRQDWEKTYWISLAAPQLCCDQDPTATLDLRENRLYIQGEMVA 273

Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              DF    PG+  + N L+AA      G+ +  + + +     +P R E V     G  
Sbjct: 274 ELEDFAERCPGQHNLQNLLLAAAAARLAGLPNVAIQKAIRSFAGMPHRLERVAQIQVGAT 333

Query: 358 IYVDYAHT-SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                  + + + E     +  ++    I++   G  +       +  I   +A + ++ 
Sbjct: 334 PIRFVNDSKATNYEAGWVALNALSPP--IILIAGGRAKQGDPGAWLRLIRAKVARVLLMG 391

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEML 456
           +  P       + AE + GI             A+  A    
Sbjct: 392 ESAP-------VLAEALQGIHYTDVELVPTLDVAVERAFAAA 426


>gi|187935191|ref|YP_001886692.1| folylpolyglutamate synthase [Clostridium botulinum B str. Eklund
           17B]
 gi|187723344|gb|ACD24565.1| tetrahydrofolate synthase [Clostridium botulinum B str. Eklund 17B]
          Length = 437

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 137/388 (35%), Gaps = 47/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ + GT+GK S  S +  I    G                +        P      L 
Sbjct: 42  KLVHIAGTNGKGSTTSMITAILMGMGYKVGMYTSPYLEEFEERIQINGKNIPKNKLTELI 101

Query: 176 YLSSQGVTHVSVEASSH-----------------------------GLDQHRLDGIKLIA 206
            +  + V  V  E   H                             G +    + I  I 
Sbjct: 102 NIVKEAVDKVIKEGYEHPTEFEILTTVMYLYYYNEKVDYAIIEVGLGGELDSTNVITPIV 161

Query: 207 GSFTNLGRDHIDYHQT-QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              T++  DH++            K  + +E +P     +    +   + ++++A     
Sbjct: 162 SVITSISFDHMNILGNCLYEIAMQKAGIIKEEIP---VVVYPQTNEAMRAIVEKAKITKS 218

Query: 266 RVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG---- 320
            V  + G  G FI +K     +  Q+V I    + ++   PL GE Q+ N  VA      
Sbjct: 219 TVYEIDGNSGTFIEVKHEEKFY--QKVKIYTGKELYNINLPLMGEHQILNLSVALTTIEI 276

Query: 321 LCIAIGI--DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           LC   G+  +  L+   +E +    GR E +   ++   I +D AH    ++M+  N++ 
Sbjct: 277 LCEREGLIFNKELIENSIESVKW-KGRLEVL---NKKPLIVMDGAHNIEGIKMLKNNVKK 332

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                  V    G   D+    ++ +I      +  +T  + R+E   +++  I+     
Sbjct: 333 YF-KYNNVFLLLGILADKQVEEMIKEITPMAYKVYALTPHSDRAELNTELKDHILKYNKN 391

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            I   +  +A++T +     +D+++++G
Sbjct: 392 TIALDSYEDAMKTVLSEATSEDLILISG 419


>gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 647

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 132/406 (32%), Gaps = 72/406 (17%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A++GT+GKS+V SF  Q+       +F  G    I     D  L      ++   L+
Sbjct: 225 PIVAISGTNGKSTVCSFTAQLLASCDCRTFMGG---NIGKPLSDCALEFILAEHICGHLA 281

Query: 176 YLSSQG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            L          VE SS+ LD      ++  A    NL  DH++ H++   Y  AK ++F
Sbjct: 282 DLGHHWPYDAAVVECSSYQLDHP--GTLRFDAACILNLTPDHLERHKSMANYATAKTQIF 339

Query: 235 EEL--------LPKE----------------SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
             L        LPK                 +   I   D     ++++   A  + L  
Sbjct: 340 AGLRGTHTLAVLPKRESARGRHQSYQVESDSTTDHIVDLDYDGATLLEKCREAVIKTLMR 399

Query: 271 --------------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE------- 309
                         G       L  V    N +   + +           P         
Sbjct: 400 RVSETPNERVACIGGRLAHIGSLPGVKVDLNTKIAIVHLPSNRSSSRQNSPSYVDLSAVS 459

Query: 310 ----FQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                 + NA +A  +  ++       A +   L++L ++P R + V          + +
Sbjct: 460 SLGTHNILNASIALLMAHSLSPKDFTVARLKVGLDRLKLLPHRMQLVAQTGNPSFRGIHW 519

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA---DIAIVTDDN 419
            + S +  +    +   + GR  +       +       +G  AL  A      ++T   
Sbjct: 520 VNDSKATNIEAAIVGLQSYGRRAL------AKTGTASNELGFAALVPALLKHQGVIT--- 570

Query: 420 PRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E    I  E+   GI    E     +A+  A  ++ +   +++
Sbjct: 571 -FGESGSLIANELREAGINPKAEVSQLSDAVTLARAVVRRGGAVIL 615


>gi|160943837|ref|ZP_02091068.1| hypothetical protein FAEPRAM212_01336 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445011|gb|EDP22014.1| hypothetical protein FAEPRAM212_01336 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104060|emb|CBL01604.1| folylpolyglutamate synthase/dihydrofolate synthase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 424

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 125/390 (32%), Gaps = 57/390 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L A+          + V GT+GK S A+ +    Q +G   +++G  ++      + R+ 
Sbjct: 28  LLAALGDPHKKLQFVHVAGTNGKGSTAAMLASCLQAAG---YRVGLYTSPFINRFNERIQ 84

Query: 164 TPSPIYLAKALSYLSSQ--GVTHVSVEASSHGLDQHRLDGI------------------- 202
                   +AL  L  Q         +  +       L  +                   
Sbjct: 85  INGQQIPDEALVELVEQVKPAADAMEDVPTEFEIITALGMLYFAQQQCDIVVLEVGLGGT 144

Query: 203 --------KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   K      T LG DH+     T      AK  + +   P  S       DA  
Sbjct: 145 LDSTNVIEKPACAVITALGMDHVKELGPTLADIAAAKAGIIKPGCPVVSYGGAPEADAVL 204

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           + V  + H     V            K      +   VT S +G D     PL G +Q  
Sbjct: 205 RRVAAQQHAPFTEV---------DFAKLQITGGDLDAVTFSFDGLDG-VRLPLIGSYQPR 254

Query: 314 NALVAAGLCIAI-----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           NA +A      +      I  + +   LE++    GRFE +          +D +H ++ 
Sbjct: 255 NAALAITALRVLRQQGWNIPESAIRAGLEQVSWP-GRFELL---RHSPAFVLDGSHNAHG 310

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +   +++++    G+   VF      D+    ++  +A        VT  NPR+  P + 
Sbjct: 311 MRATVQSLKDRFPGQKF-VFLVSIMADKDVDEMLALLAPLAERFVTVTAHNPRA-MPAQT 368

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            AE    I  +       ++I   +    +
Sbjct: 369 LAE---HIRAYGCTAEAADSIEAGVARAEE 395


>gi|254446684|ref|ZP_05060159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
 gi|198256109|gb|EDY80418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
          Length = 429

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 145/421 (34%), Gaps = 73/421 (17%)

Query: 52  NKED-GHLFIPQAIAQ-GA------EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
           +  D GH    +A    GA      + +V S  +S          +    VV      L 
Sbjct: 44  HVFDQGHE--DEAWRSFGAEKAQQYKLVVCSPGFSADHPWLVAARSVGCEVVPE----LD 97

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L AS   G     I+ +TGT+GK+++  F+      +G+ ++  G               
Sbjct: 98  LGASLWRG----PIVVITGTNGKTTLTEFITSAFSSAGIEAYACGNIG------------ 141

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 ++  ++   +     V   +S       RL      +  +TN   DH+D H++ 
Sbjct: 142 ----RPISSLVADDCNLEAIAVCEVSSFQAEITKRL---HADSLLWTNFDEDHLDRHKSL 194

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           ++YF  K  L      +     ++  D   KE               G +  +    +  
Sbjct: 195 ESYFKCKYTL-----TQLQRGDVFLFDESVKE--------------FGERFNYAIPDEGL 235

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              +   + + V G  F+    LP     Y  L+A  L + +G+D   ++E        P
Sbjct: 236 IDSSLDALELGVAGTVFE---TLPER-NTY--LIARALWLRMGLDEGELIEAANNFKKSP 289

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E +   ++ G  Y D + ++N    +   ++   +  + +  G G ++       + 
Sbjct: 290 HRMELIV--NQDGISYWDDSKSTN-FHAVYGALKRFENPVVWI--GGGKNKGGDLPRFVA 344

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++A  ++   ++       E   ++ A             +  EA+  A  M      ++
Sbjct: 345 RVASSISSAHLI------GETSAELAAAFEEHGVPVRVYEDLEEAVAGANAMAESGSNIL 398

Query: 464 V 464
           +
Sbjct: 399 L 399


>gi|226950592|ref|YP_002805683.1| FolC bifunctional protein [Clostridium botulinum A2 str. Kyoto]
 gi|226840954|gb|ACO83620.1| FolC bifunctional protein [Clostridium botulinum A2 str. Kyoto]
          Length = 429

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/407 (15%), Positives = 130/407 (31%), Gaps = 49/407 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--------- 146
           + T K L L  +          + + GT+GK S  + +  + + SG              
Sbjct: 23  ERTEKLLELLGNPHKR---LRCIHIAGTNGKGSTTAMISTVLKESGYKVGMYTSPYIEEF 79

Query: 147 -------------------IGPTSTISSFAQDNRLTTPSPIYLA--KALSYLSSQGVTHV 185
                              I   + I    ++     P+   +       Y   + V   
Sbjct: 80  EERIQINGHNITKEDLGYIITKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKEVDFA 139

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244
            +E    G      + ++ I    T++  DH++    T +     K      ++ K    
Sbjct: 140 VIEVGL-GGRLDSTNVLEPILSIITSISYDHMNILGETLEEITYEKA----GIIKKAPVI 194

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +        K + K      C ++ V      I ++ +     +Q   +  +   ++   
Sbjct: 195 MYPQKKEVEKNIEKVCKEKNCELIKVEDNLINIEIEIIGKNMGQQSFKLKTKENTYNICL 254

Query: 305 PLPGEFQVYNALVAAGL---CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L GE Q+ N +         + +GI    +   +  L  V         N     +  D
Sbjct: 255 SLLGEHQIKNCITVILALEKLMKLGIKIEKIHI-ISALKKVKWPARLEIVNKNPLTVI-D 312

Query: 362 YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDN 419
            AH  + +E +  N+ +     ++I++ G   D+   +   M K  + LAD  + V   N
Sbjct: 313 GAHNIDGIESLKNNVSKYFKYNKLILILGILKDK---QVEDMIKTLVPLADRVLTVAPHN 369

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R E  +++   ++          +  E    A       D++++ G
Sbjct: 370 DRGESSKELMHIVLKHNESCEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|15836434|ref|NP_300958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae J138]
 gi|8979275|dbj|BAA99109.1| muramoylalanine-glutamate ligase [Chlamydophila pneumoniae J138]
          Length = 417

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 149/426 (34%), Gaps = 72/426 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S              +  I VV + +  L    +  + ++P     +TG++GK++  
Sbjct: 62  VIRSPGIKPYHPWVEQAVSLKIPVVTDIQVALK---TPEFQRYPS--FGITGSNGKTTTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F+  +    G+ +  +G                         L ++   GV    VE S
Sbjct: 117 LFLTHLLNTLGIPAIAMGNIGL-------------------PILDHMGQPGVRV--VEIS 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L         L    F N  R+H+DYH+   AYF+AK+R+ ++ L ++    ++ + 
Sbjct: 156 SFQLATQEEHVPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRI-QKCLRQDKTFWVWEEC 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +                    YQ   I+ +++  I +K                      
Sbjct: 215 SLGN----------------SYQ---IYSEEIEEILDKGDA------------LKPIYLH 243

Query: 311 QVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              N   A  L   +G +     L+ +        R E++G       I    A T  ++
Sbjct: 244 DRDNYCAAYALANEVGWVSPEGFLKAIRTFEKPAHRLEYLGKKDGVHYINDSKATTVTAV 303

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  +     G+ ++V   G D+  G  P +  +        I        E  + I 
Sbjct: 304 EKALMAV-----GKDVIVILGGKDKG-GDFPALASVLSQTTKHVIAM-----GECRQTIA 352

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             +   IP  + K +  EA+  A  +  + D ++++  G  +     + +++ +    +I
Sbjct: 353 DALSEKIPLTLSK-DLQEAVSIAQTIAQEGDTVLLS-PGCASFDQFQSFKERGAYFKLLI 410

Query: 490 REILGL 495
           RE+  +
Sbjct: 411 REMQAV 416


>gi|260891632|ref|ZP_05902895.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
 gi|260858642|gb|EEX73142.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
          Length = 459

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 131/354 (37%), Gaps = 51/354 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A +   K    I++ TGT+GK++ ++ + ++   +G  +   G               
Sbjct: 82  DLAYKYVDK-NIKIISFTGTNGKTTTSTKMAELLNFAGFRAKLAGNAG------------ 128

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                  + A      + + ++ +E SS+ L+ +    I        NL  DH+  +++ 
Sbjct: 129 ------FSFAKLVADEEELDYIVLELSSYQLENN--PQIHSNIAGIINLTPDHLTRYESV 180

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--------AHNAGCRVLSVGYQGK 275
           + Y+  K  +F++    +  A+I  DD    E+ +R        A        + G    
Sbjct: 181 EDYYITKFAIFDKQT-GDDFALINLDDEVFAELYERREINEKMKAQKVYLSKETKGTVFV 239

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIG 326
           + +  ++    +K+   I   G+  D +           L G   + N L        + 
Sbjct: 240 YENNIRIMKDLSKRIDEIQNFGEKIDEISEILLKTEELSLKGRHNLENMLFLISSAKILN 299

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + +  + E L+  + +  R E      +G   +++ +  +N +E  LK I +      I+
Sbjct: 300 VKNEKLAEFLKSTNALEHRLENFFV--KGNTAFINDSKGTN-VESTLKAIDSF--NNSII 354

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +   G D+     P++ ++   + D   +  DN      + +  ++   G   +
Sbjct: 355 MILGGDDKKIDNMPLIERVKEKV-DFVYLIGDNA-----QILIDDMEKIGYKNY 402


>gi|144897230|emb|CAM74094.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 304

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 99/311 (31%), Gaps = 30/311 (9%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +  +  G        ++      T +   H  +  T +   +AK  +F   +     
Sbjct: 1   MFELGMNHAGELIPLTKMVRPHVAVITTIEAVHSAFFATTEDIADAKAEIFLG-VEAGGT 59

Query: 244 AIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFD 301
            I+  D+ + + +   A  AG     S G           CA+        ++       
Sbjct: 60  VILPRDNRHFRRLAAAAKAAGISHRQSFGSHIDADARMLDCAVDPDDTAVFALLRDHALA 119

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YV 360
           F   +PG     NAL       A+G D+    + L  +    GR E      +GG I  +
Sbjct: 120 FRVGVPGLHWGMNALAVLLAVGALGGDAEKASQSLAAMRPPKGRGERHVVAWKGGSIEVI 179

Query: 361 DYAHTSNSLEMILKNI-----RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADI 412
           D ++ ++ + M          R    GR I V G     GD        + + A      
Sbjct: 180 DESYNASPVSMKAAIATLAAARPGKGGRRIAVLGDMLELGDSAPALHAHLAEAAALWNTD 239

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIE-A--IRTAIEMLNKQDVLVVAG 466
            + T           + A +   +P     I   N  E A  I+T I      DV+VV G
Sbjct: 240 LVCTA--------GPLMAHLHQALPATRRGIHAANSTELAGLIKTVI---KPGDVVVVKG 288

Query: 467 -KGHETVHIVT 476
             G     +V 
Sbjct: 289 SAGSRMAQVVK 299


>gi|313892570|ref|ZP_07826157.1| bifunctional protein FolC [Dialister microaerophilus UPII 345-E]
 gi|313118967|gb|EFR42172.1| bifunctional protein FolC [Dialister microaerophilus UPII 345-E]
          Length = 434

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 131/389 (33%), Gaps = 50/389 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------------------- 155
            ++ VTGT+GK SV + + +I + SG+ + +      I                      
Sbjct: 40  KVIHVTGTNGKGSVVAMITKILELSGIKTGRFTSPHLIEYTERFYSCGAYISKEKFAEMY 99

Query: 156 --------FAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                     ++     P+   +  A++  Y   + V +  VE    GL     + ++  
Sbjct: 100 EKVQKAVQIMKEEGHEQPTEFEMLTAMAFLYFKEENVEYAVVEVGMGGL-LDSTNVVEPE 158

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+  DH+   +       +       ++ ++ P +  A +     + K A     
Sbjct: 159 ISVITNVAMDHM---KILGKDIKSIAEQKAGIIKEKKPVVTSATNEALSIISKEAEKKHS 215

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQVYNALVAAG 320
           ++       K   +  V   +  Q + +  +      K+     PL G++Q  NA VA  
Sbjct: 216 KIYVY---NKDFAVDSVEVKNKGQIIKLKADIKEISDKEQTIEIPLNGKYQSINAAVAWT 272

Query: 321 LCIAIGIDSALVLEH--LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-R 377
               +      +     L+    V     F      G  I +D AH     + + + + +
Sbjct: 273 TLKLLENKEKRITNESILKGFLSVIWHGRFEIFEIDGNTIILDGAHNFAGAKTLNETLNQ 332

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
              + + +V+F    D++  K   +     D            R+ D  K   +      
Sbjct: 333 KYKNKKRLVIFSSLKDKETQKILKLIVRENDTVFFVEAPTKRTRTFDELKKMTD-----S 387

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              E  N   A+  A+++  K +V++V G
Sbjct: 388 KHFEMPNVKTALDKALKISVKDNVIIVCG 416


>gi|307825590|ref|ZP_07655808.1| FolC bifunctional protein [Methylobacter tundripaludum SV96]
 gi|307733476|gb|EFO04335.1| FolC bifunctional protein [Methylobacter tundripaludum SV96]
          Length = 423

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 126/409 (30%), Gaps = 52/409 (12%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+++     +   +F +          + V GT+GK S  ++++ I    G         
Sbjct: 19  PLVIDLGLERAAQVFHALNPNYVKPPTITVAGTNGKGSSVAYLESIYTAQGYRVGSYTSP 78

Query: 151 STISSFAQDNRLTTP------------------------SPIYLAKALSYLSSQGVTHVS 186
             +    +      P                               AL      GV    
Sbjct: 79  HILKYNERIKIDGKPVSDDKICEAFARIESVRGNTSLSYFEFGTLAALDIFQRAGVDVQL 138

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAI 245
           +E    G     ++ +       T++  DHI++   T++A    K  +F   +P      
Sbjct: 139 LEVGL-GGRLDAVNIVDPDVALITSISIDHIEWLGGTREAIGREKAGIFRAAIP-----A 192

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  D    + +M+ A      +  +     +             +  + +          
Sbjct: 193 ITGDPDPPESLMQSAVEQHALLYCIDKDFSYKKRATGWDWFFADRKMLQLP------EPG 246

Query: 306 LPGEFQVYNALVAAGL----CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           L GE Q +NA             + +  A + + L  + +  GRF+ +        + +D
Sbjct: 247 LKGEHQYHNASAVILAVTKMAEILPVTEASIRQGLANVRLA-GRFQLIDGE---IPVLLD 302

Query: 362 YAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             H   ++  +   + T+  GR I  VF    D+D      +      + D       NP
Sbjct: 303 VGHNPQAVRTLADYVTTVFPGRRIHAVFSMMKDKDIAGVLEIMNFV--VYDWFFAPLANP 360

Query: 421 RSEDPEKIRAEI--IHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           R+   E +  EI     +        +  EA   A     + D+L+V G
Sbjct: 361 RAAS-ESVMREIFSQSSVSNVSFGFADFTEAFSAAKNQSQQGDLLLVFG 408


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.137    0.388 

Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,745,424,510
Number of Sequences: 14124377
Number of extensions: 418322474
Number of successful extensions: 1366265
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 14906
Number of HSP's successfully gapped in prelim test: 8275
Number of HSP's that attempted gapping in prelim test: 1276367
Number of HSP's gapped (non-prelim): 29726
length of query: 497
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 354
effective length of database: 2,823,007,719
effective search space: 999344732526
effective search space used: 999344732526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 84 (36.9 bits)